BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780695|ref|YP_003065108.1| flagellar MS-ring protein [Candidatus Liberibacter asiaticus str. psy62] (563 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780695|ref|YP_003065108.1| flagellar MS-ring protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040372|gb|ACT57168.1| flagellar MS-ring protein [Candidatus Liberibacter asiaticus str. psy62] Length = 563 Score = 1140 bits (2950), Expect = 0.0, Method: Compositional matrix adjust. Identities = 563/563 (100%), Positives = 563/563 (100%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV Sbjct: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF Sbjct: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI Sbjct: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE Sbjct: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS Sbjct: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA Sbjct: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN Sbjct: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL Sbjct: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE Sbjct: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 Query: 541 RFAKILRKWARSEIEDRYTQHIS 563 RFAKILRKWARSEIEDRYTQHIS Sbjct: 541 RFAKILRKWARSEIEDRYTQHIS 563 >gi|315121860|ref|YP_004062349.1| flagellar MS-ring protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495262|gb|ADR51861.1| flagellar MS-ring protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 560 Score = 858 bits (2218), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/560 (75%), Positives = 480/560 (85%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 MAI+DQLLQFFKS SLGR R+ I+ +V+ I L +AA FF++SP YD+LYVKLE SDV Sbjct: 1 MAIIDQLLQFFKSAMSLGRMRLFIVGAVMFASIALLLAASFFMSSPIYDSLYVKLEASDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 N+ISVALSEA+IDFRI+ NGSSI VPS ++ KAR+ LA QGLP+SS+NSGYELFDKVNSF Sbjct: 61 NKISVALSEASIDFRIAGNGSSILVPSHLLSKARLRLAEQGLPNSSNNSGYELFDKVNSF 120 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQEITRVRALEGEI+RTIQ ISGIVAARVHIVMPDMGSFR+IGA+PTASVM+R + Sbjct: 121 GLTSFMQEITRVRALEGEISRTIQDISGIVAARVHIVMPDMGSFRRIGAKPTASVMVRVV 180 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240 NPSVYKSAEAIRHLVAAAVP LD+ DVTVLDSTGKLL ANE+ERNI GKSL IVQA+QHE Sbjct: 181 NPSVYKSAEAIRHLVAAAVPGLDISDVTVLDSTGKLLVANEIERNIFGKSLGIVQAVQHE 240 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 IEMNINKALA FLG+DNFRSAV+AELN D QQI+EIVYDPDS+VERS+RLSKD QRSE+ Sbjct: 241 IEMNINKALAPFLGIDNFRSAVIAELNTDIQQIKEIVYDPDSRVERSVRLSKDVQRSESH 300 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 Q ESAVTVEQNMPHVS++ PR+LENTDKKEEQSNYEINTKSI+TTH+NYKLERLSIA Sbjct: 301 QQESAVTVEQNMPHVSEKNATSPRALENTDKKEEQSNYEINTKSISTTHNNYKLERLSIA 360 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 VVVNKGRL E+LG S +Q K+DSYLAEIN+IVSAATGINS RGD ITITSMDFL++QL N Sbjct: 361 VVVNKGRLMEMLGPSMEQSKVDSYLAEINRIVSAATGINSIRGDNITITSMDFLDDQLLN 420 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 S TVQVSFMDILSR+F+ +INAL FL LL+ G+H LR +NID K+ E+ KS L Sbjct: 421 SSTVQVSFMDILSRNFSIIINALFFLTLVLLMALFGVHVLRGFNNIDLIKRKEMEAKSAL 480 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 S P I+S T LM +D++A DS QDI S + N QS IN+YV++QSD RLL MIEINEE Sbjct: 481 STPSIASTAETTLMSSDDMASDSFRQDILSRNNNFQSDINNYVAEQSDRRLLRMIEINEE 540 Query: 541 RFAKILRKWARSEIEDRYTQ 560 RF+KI+RKW RSEIE RYTQ Sbjct: 541 RFSKIIRKWVRSEIESRYTQ 560 >gi|241203091|ref|YP_002974187.1| flagellar MS-ring protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856981|gb|ACS54648.1| flagellar M-ring protein FliF [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 563 Score = 562 bits (1449), Expect = e-158, Method: Compositional matrix adjust. Identities = 303/565 (53%), Positives = 400/565 (70%), Gaps = 16/565 (2%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M +L+QL+Q FK+ SLGRTR++IL V V I + +AA FVN P + LYV L+ D+ Sbjct: 1 MNLLNQLVQIFKNFGSLGRTRLMILGGVGAVSIAIVLAAALFVNKPAQETLYVGLDSPDL 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 N+IS+AL+EANI+F++ +G+SISVP+ M GKAR+ LA +GLP+S+ N+GYELFD V S Sbjct: 61 NQISMALAEANINFQVGTDGTSISVPAGMTGKARLMLAERGLPNSA-NAGYELFDNVGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEIARTIQSISGI AARVHIVMP++G+FRK +PTASVMIRA Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQSISGITAARVHIVMPEVGNFRKAEQKPTASVMIRAS 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239 + +A +IRHLVA+AVP LD+ DVT+LDS G+LL + +E + L +SL+IVQ +Q Sbjct: 180 ATTGRSAATSIRHLVASAVPGLDVDDVTILDSAGQLLASGDEASNSSLNRSLNIVQNVQQ 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 E+E NI+KALA FLG+DNFRS+V A+LN D QQI+E YDP+SKVERS+R +K+AQ+S+ Sbjct: 240 EVESNIDKALAPFLGMDNFRSSVTADLNTDAQQIQETTYDPESKVERSVRSTKEAQQSQQ 299 Query: 300 SQPESAVTVEQNMPHVSDRK--VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 Q +SA TVEQN+P + P S + +DK+EEQ+NYEIN+K+ ATT +YK+E+L Sbjct: 300 KQSDSATTVEQNIPQAAPEAGGSAGPESQDKSDKREEQTNYEINSKTTATTRSSYKVEKL 359 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 SIAVVVNKGR+ +++G ADQ K+D+YLAE+ KIV++A GI+++RGD +T+T+MDFLENQ Sbjct: 360 SIAVVVNKGRIAKMVGEPADQTKVDAYLAEMQKIVASAAGIDAKRGDVVTVTAMDFLENQ 419 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR--LHNIDDAKKG--- 472 L T V MD+LSR+ A +IN+L F+ LV ++GL L R N A G Sbjct: 420 LLEDATGGVRVMDMLSRNLAGIINSLAFVAVAFLVVWMGLRPLVRSVSGNGSSAAFGDAT 479 Query: 473 -EVGGKSILSPPPISSAVTTGLMPNDNIALD---SSNQDIFSHSRNLQSRINSYVSKQSD 528 E G + P S A LM D D S +D+ S + N V + + Sbjct: 480 PEAAGLELPDFAPASGAPGGALM--DGFGSDFGFDSTEDLLSLGDD-DGNFNRRVKEGPE 536 Query: 529 LRLLHMIEINEERFAKILRKWARSE 553 +L M+EINEER AKILRKWA E Sbjct: 537 RKLSRMVEINEERAAKILRKWAIDE 561 >gi|327193018|gb|EGE59930.1| flagellar M-ring protein [Rhizobium etli CNPAF512] Length = 563 Score = 562 bits (1448), Expect = e-158, Method: Compositional matrix adjust. Identities = 297/562 (52%), Positives = 399/562 (70%), Gaps = 16/562 (2%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M +L+QL+Q FK+ +LGRTR++IL V + I + +AA FVN P + LYV L+ D+ Sbjct: 1 MNLLNQLVQIFKNFGALGRTRLMILGGVGALSIAIILAAALFVNKPAQETLYVGLDAPDL 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 N+IS+AL+EANI+F++ +G+SISVP+ M GKAR+ LA +GLP+S+ N+GYELFD V S Sbjct: 61 NQISMALAEANINFQVGTDGASISVPAGMTGKARLMLAERGLPNSA-NAGYELFDNVGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEIARTIQSISGI AARVHIVMP++G+FRK +PTASVMIRA Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQSISGITAARVHIVMPEVGNFRKAEQKPTASVMIRAS 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239 + +A +IRHLVA+AVP LD+ DVT+LDS G+LL + +E + L +SL+IVQ +Q Sbjct: 180 AATGRSAATSIRHLVASAVPGLDVDDVTILDSAGQLLASGDEASNSSLNRSLNIVQNVQQ 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 E+E NI+KALA FLG+DNFRS+V A+LN D QQI+E YDP+SKVERS+R +K+AQ+S+ Sbjct: 240 EVESNIDKALAPFLGMDNFRSSVTADLNTDAQQIQETTYDPESKVERSVRSTKEAQQSQQ 299 Query: 300 SQPESAVTVEQNMPHVSDRK--VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 Q ++A TVEQN+P + P S + +DK+EEQ+NYEIN+K+ ATT ++YK+E+L Sbjct: 300 KQSDNATTVEQNIPQAAPDAGGASGPESQDKSDKREEQTNYEINSKTTATTRNSYKVEKL 359 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 SIAVVVNKGR+ +++G ADQ K+D+YLAE+ KIV++A GI+++RGD +T+T+MDFLENQ Sbjct: 360 SIAVVVNKGRIAKMVGEPADQAKVDAYLAEMQKIVASAAGIDAKRGDVVTVTAMDFLENQ 419 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR--LHNIDDAKKG--- 472 L T V MD+LSR+ A +IN+L F+ +V ++GL L R N A G Sbjct: 420 LLEDATGGVRVMDMLSRNLAGIINSLAFVAVAFVVVWMGLRPLVRSVTGNGASAVLGDAT 479 Query: 473 -EVGGKSILSPPPISSAVTTGLMPNDNIALD---SSNQDIFSHSRNLQSRINSYVSKQSD 528 E G + P A LM D D S +D+ S + N V + + Sbjct: 480 PEAAGLELPDFAPAVGAPGGALM--DGFGSDFGFDSTEDLLSLGDD-DGNFNRRVKEGPE 536 Query: 529 LRLLHMIEINEERFAKILRKWA 550 +L M+EINEER AKILRKWA Sbjct: 537 RKLARMVEINEERAAKILRKWA 558 >gi|190890348|ref|YP_001976890.1| flagellar M-ring protein [Rhizobium etli CIAT 652] gi|190695627|gb|ACE89712.1| flagellar M-ring protein [Rhizobium etli CIAT 652] Length = 563 Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust. Identities = 295/562 (52%), Positives = 399/562 (70%), Gaps = 16/562 (2%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M +L+QL+Q FK+ +LGRTR++IL V + I + +AA FVN P + LYV L+ D+ Sbjct: 1 MNLLNQLVQIFKNFGALGRTRLMILGGVGALSIAIILAAALFVNKPAQETLYVGLDAPDL 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 N+IS+AL+EANI+F++ +G+SISVP+ M GKAR+ LA +GLP+S+ N+GYELFD V S Sbjct: 61 NQISMALAEANINFQVGTDGASISVPAGMTGKARLMLAERGLPNSA-NAGYELFDNVGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEIARTIQSISGI AARVHIVMP++G+FRK +PTASVMIRA Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQSISGITAARVHIVMPEVGNFRKAEQKPTASVMIRAS 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239 + +A +IRHLVA+AVP LD+ DVT+LDS G+LL + +E + L +SL+IVQ +Q Sbjct: 180 AATGRSAATSIRHLVASAVPGLDVDDVTILDSAGQLLASGDEASNSSLNRSLNIVQNVQQ 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 E+E NI+KALA FLG+DNFRS+V A+LN D QQI+E YDP+SKVERS+R +K+AQ+S+ Sbjct: 240 EVESNIDKALAPFLGMDNFRSSVTADLNTDAQQIQETTYDPESKVERSVRSTKEAQQSQQ 299 Query: 300 SQPESAVTVEQNMPHVSDRK--VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 Q ++A TVEQN+P + P S + +DK+EEQ+NYEIN+++ ATT ++YK+E+L Sbjct: 300 KQSDNATTVEQNIPQAAPDAGGASGPESQDKSDKREEQTNYEINSRTTATTRNSYKVEKL 359 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 SIAVVVNKGR+ +++G ADQ KID+YLAE+ KIV++A GI+++RGD +T+T+MDFLENQ Sbjct: 360 SIAVVVNKGRIAKMVGEPADQAKIDAYLAEMQKIVASAAGIDAKRGDVVTVTAMDFLENQ 419 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK------ 471 L T V MD+LSR+ A +IN+L F+ +V ++GL L R + + A Sbjct: 420 LLEDATGGVRVMDMLSRNLAGIINSLAFVAVAFVVVWMGLRPLVRSVSGNGASAVLGDAT 479 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALD---SSNQDIFSHSRNLQSRINSYVSKQSD 528 E G + P A LM D D S +D+ S + N V + + Sbjct: 480 PEAAGLELPDFAPAVGAPGGALM--DGFGSDFGFDSTEDLLSLGDD-DGNFNRRVKEGPE 536 Query: 529 LRLLHMIEINEERFAKILRKWA 550 +L M+EINEER AKILRKWA Sbjct: 537 RKLARMVEINEERAAKILRKWA 558 >gi|116250467|ref|YP_766305.1| flagellar MS-ring protein [Rhizobium leguminosarum bv. viciae 3841] gi|115255115|emb|CAK06189.1| putative flagellar M-ring protein [Rhizobium leguminosarum bv. viciae 3841] Length = 561 Score = 558 bits (1439), Expect = e-157, Method: Compositional matrix adjust. Identities = 302/563 (53%), Positives = 400/563 (71%), Gaps = 14/563 (2%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M +L+QL+Q FK+ SLGRTR++IL V + I + +AA FVN P + LYV L+ D+ Sbjct: 1 MNLLNQLVQIFKNFGSLGRTRLMILGGVGALSIAIILAAALFVNKPAQETLYVGLDSPDL 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 N+IS+AL+EANI+F++ +GSSISVP+ M GKAR+ LA +GLP+S+ N+GYELFD V S Sbjct: 61 NQISMALAEANINFQVGTDGSSISVPAGMTGKARLMLAERGLPNSA-NAGYELFDNVGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEIARTIQSISGI AARVHIVMP++G+FRK +PTASVMIRA Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQSISGITAARVHIVMPEVGNFRKAEQKPTASVMIRAS 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239 + +A +IRHLVA+AVP LD+ DVT+LDS G+LL + +E + L +SL+IVQ +Q Sbjct: 180 ATTGRSAATSIRHLVASAVPGLDVDDVTILDSAGQLLASGDEASNSSLNRSLNIVQNVQQ 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 E+E NI+KALA FLG+DNFRS+V A+LN D QQI+E YDP+SKVERS+R +K+AQ+S+ Sbjct: 240 EVESNIDKALAPFLGMDNFRSSVTADLNTDAQQIQETTYDPESKVERSVRSTKEAQQSQQ 299 Query: 300 SQPESAVTVEQNMPHVSDRK--VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 Q +SA TVEQN+P + P S + +DK+EEQ+NYEIN+K+ ATT +YK+E+L Sbjct: 300 KQSDSATTVEQNIPQAAPEAGGSAGPESQDKSDKREEQTNYEINSKTTATTRSSYKVEKL 359 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 SIAVVVNKGR+ +++G ADQ K+D+YLAE+ KIV++A GI+++RGD +T+T+MDFLENQ Sbjct: 360 SIAVVVNKGRIAKMVGEPADQAKVDAYLAEMQKIVASAAGIDAKRGDVVTVTAMDFLENQ 419 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG----E 473 L T V MD+LSR+ A +IN+L F+ +V ++GL L R N A G E Sbjct: 420 LLEDATGGVRVMDMLSRNLAGIINSLAFVAVAFVVVWMGLRPLVRSINGTSAAFGDATPE 479 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALD---SSNQDIFSHSRNLQSRINSYVSKQSDLR 530 G + P S A LM D D S +D+ S + N V + + + Sbjct: 480 AAGLELPDFAPASGAPGGALM--DGFGSDFGFDSTEDLLSLGDD-DGNFNRRVKEGPERK 536 Query: 531 LLHMIEINEERFAKILRKWARSE 553 L M+EINEER AKILRKWA E Sbjct: 537 LSRMVEINEERAAKILRKWAIDE 559 >gi|86356297|ref|YP_468189.1| flagellar MS-ring protein [Rhizobium etli CFN 42] gi|86280399|gb|ABC89462.1| flagellar M-ring protein [Rhizobium etli CFN 42] Length = 563 Score = 556 bits (1433), Expect = e-156, Method: Compositional matrix adjust. Identities = 298/563 (52%), Positives = 402/563 (71%), Gaps = 18/563 (3%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M +L+QL+Q FK+ +LGRTR++IL V V I + +AA FVN P + LYV L+ D+ Sbjct: 1 MNLLNQLVQIFKNFGALGRTRLMILGGVGSVSIAIILAAALFVNKPAQETLYVGLDAPDL 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 N+IS+AL+EANI+F++ +GSSI+VP+ M GKAR+ LA +GLP+S+ N+GYELFD V S Sbjct: 61 NQISMALAEANINFQVGTDGSSITVPAGMTGKARLMLAERGLPNSA-NAGYELFDNVGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEIARTIQSISGI AARVHIVMP++G+FRK +PTASVMIRA Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQSISGITAARVHIVMPEVGNFRKAEQKPTASVMIRAS 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239 + +A +IRHLVA+AVP LD+ DVT+LDS G+LL + +E + L +SL+IVQ +Q Sbjct: 180 AATGRSAATSIRHLVASAVPGLDVDDVTILDSAGQLLASGDEASNSSLNRSLNIVQNVQQ 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 E+E NI+KALA FLG+DNFRS+V A+LN D QQI+E VYDP+SKVERS+R +K+AQ+S+ Sbjct: 240 EVESNIDKALAPFLGMDNFRSSVTADLNTDAQQIQETVYDPESKVERSVRSTKEAQQSQQ 299 Query: 300 SQPESAVTVEQNMPHVSDRK--VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 Q ++A TVEQN+P + P S + +DK+EEQ+NYEIN+K+ ATT ++Y++E+L Sbjct: 300 RQSDNATTVEQNIPQAAPDAGGSGGPESQDKSDKREEQTNYEINSKTTATTRNSYQVEKL 359 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 SIAVVVNKGR+ +++G ADQ KID+YLAE++KIV++A GI+++RGD +T+T+MDFLENQ Sbjct: 360 SIAVVVNKGRIAKMVGEPADQAKIDAYLAEMHKIVASAAGIDAKRGDVVTVTAMDFLENQ 419 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR-------LHNIDDAK 470 L T V MD+LSR+ A +IN+L F+ +V ++GL L R + DA Sbjct: 420 LLEDATGGVRVMDMLSRNLAGIINSLAFVAVAFVVVWMGLRPLVRSVSGNGSSSVLGDAT 479 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALD---SSNQDIFSHSRNLQSRINSYVSKQS 527 E G + P + A LM D D S +D+ S + N V + Sbjct: 480 P-EAAGLELPDFAPAAGAAGGALM--DGFGSDFGFDSTEDLLSLGDD-DGNFNRRVKEGP 535 Query: 528 DLRLLHMIEINEERFAKILRKWA 550 + +L M+EINEER AKILRKWA Sbjct: 536 ERKLARMVEINEERAAKILRKWA 558 >gi|209547913|ref|YP_002279830.1| flagellar MS-ring protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533669|gb|ACI53604.1| flagellar M-ring protein FliF [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 563 Score = 548 bits (1412), Expect = e-154, Method: Compositional matrix adjust. Identities = 300/566 (53%), Positives = 402/566 (71%), Gaps = 18/566 (3%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M +L+QL+Q FK+ SLGRTR++IL V V I + +AA FVN P + LYV L+ D+ Sbjct: 1 MNLLNQLVQIFKNFGSLGRTRLMILGGVGAVSIAIVLAAALFVNKPAQETLYVGLDSPDL 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 N+IS+AL+EAN+DF++ +G+SISVP+ M GKAR+ LA +GLP+S+ N+GYELFD V S Sbjct: 61 NQISMALAEANVDFQVGTDGTSISVPAGMTGKARLLLAERGLPNSA-NAGYELFDNVGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEIARTIQSISGI AARVHIVMP++G+FRK +PTASVMIRA Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQSISGITAARVHIVMPEVGNFRKAEQKPTASVMIRAS 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239 + +A +IRHLVA+AVP LD+ DVT+LDS G+LL + +E + L +SL+IVQ +Q Sbjct: 180 ATTGRSAATSIRHLVASAVPGLDVDDVTILDSAGQLLASGDEASNSSLNRSLNIVQNVQQ 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 E+E NI+KALA FLG+DNFRS+V A+LN D QQI+E YDP+SKVERS+R +K+AQ+S+ Sbjct: 240 EVESNIDKALAPFLGMDNFRSSVTADLNTDAQQIQETTYDPESKVERSVRSTKEAQQSQQ 299 Query: 300 SQPESAVTVEQNMPHVSDRK--VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 Q +SA TVEQN+P + P S + +DK+EEQ+NYEIN+++ ATT ++YK+E+L Sbjct: 300 KQSDSATTVEQNIPQAAPEAGGSAGPESQDKSDKREEQTNYEINSRTTATTRNSYKVEKL 359 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 SIAVVVNKGR+ +++G ADQ KID+YLAE+ KIV++A+GI+++RGD +T+T+MDFLENQ Sbjct: 360 SIAVVVNKGRIAKMVGEPADQAKIDAYLAEMQKIVASASGIDAKRGDVVTVTAMDFLENQ 419 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR-------LHNIDDAK 470 L T V MD+LSR+ A +IN+L F+ +V ++GL L R + DA Sbjct: 420 LLEDATGGVRVMDMLSRNLAGIINSLAFVAVAFVVVWMGLRPLVRSVSGNGSSSVLGDAT 479 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALD---SSNQDIFSHSRNLQSRINSYVSKQS 527 E G + P + A LM D D S +D+ S + N V + Sbjct: 480 P-EAAGLELPDFAPAAGASGGALM--DGFGSDFGFDSTEDLLSLGDD-DGNFNRRVKEGP 535 Query: 528 DLRLLHMIEINEERFAKILRKWARSE 553 + +L M+EINEER AKILRKWA E Sbjct: 536 ERKLSRMVEINEERAAKILRKWAIDE 561 >gi|222149996|ref|YP_002550953.1| flagellar MS-ring protein [Agrobacterium vitis S4] gi|221736978|gb|ACM37941.1| flagellar M-ring protein [Agrobacterium vitis S4] Length = 568 Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust. Identities = 281/559 (50%), Positives = 384/559 (68%), Gaps = 11/559 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + +QLLQ FK+ +SLG T++ LA V +V + L + A FF+N P ++ LYV LE +DV Sbjct: 7 MNLFNQLLQVFKNLSSLGPTKLWTLAGVGVVSVALVIGAAFFINKPAFETLYVGLEATDV 66 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 N+IS+AL+EA + F+ +G SI V + M GKAR+ LA +GLP+S+ N+GYELFD V S Sbjct: 67 NQISIALAEAGVGFQTGADGKSIQVQAGMTGKARLLLAERGLPNST-NAGYELFDNVGSL 125 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEIARTIQ I+GI AARVHIVMPD+G+FR+ +PTASVMIRA Sbjct: 126 GLTSFMQEVTRVRALEGEIARTIQQINGIAAARVHIVMPDVGNFRRGAQKPTASVMIRAG 185 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240 + + KSA +IRHLVA+AVP L++ DVT+LDSTG+LL + + ++L + Q++Q E Sbjct: 186 SDAGRKSAASIRHLVASAVPGLEIDDVTILDSTGQLLASGDETGGAANRNLGVAQSVQQE 245 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 IE NI+KALA FLG+DNFRS+V A+LN D QQI+E VYDP+SKVERS R +K+AQ+S+ Sbjct: 246 IESNIDKALAPFLGMDNFRSSVTAQLNTDQQQIQETVYDPESKVERSTRTTKEAQKSQQR 305 Query: 301 QPESAVTVEQNMPHVSDRKVPL-PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 Q ++A TVEQN+P + + P S + DKKEEQ+NYEIN+K+IAT + Y L++LS+ Sbjct: 306 QSDTAATVEQNIPQAAPQAGGAGPESSDQQDKKEEQTNYEINSKTIATVKNGYTLDKLSV 365 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AVVVNK R+ ++G DQ KID+YLAE+ KIV +A G++ +RGD +T+T+MDFLENQL Sbjct: 366 AVVVNKQRIATMVGEPVDQAKIDAYLAEMQKIVKSAAGLDDKRGDVVTLTAMDFLENQLL 425 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + M+ILSR+ A +IN+L FL LV ++G+ + R E G ++ Sbjct: 426 SEAPTGPGVMEILSRNMAGIINSLAFLAVAFLVVWMGIRPMVRSMGGGGTAALEGGSDAV 485 Query: 480 --LSPPPISSAVTTGLMP------NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 L P S + G + DS++ D+ + + N V + + RL Sbjct: 486 AGLELPDFSPGLDAGAGGGLMDGFGSDFGFDSAD-DVLALDNDPNGGFNRRVKEGPERRL 544 Query: 532 LHMIEINEERFAKILRKWA 550 M+EI+EER AKILRKWA Sbjct: 545 ARMVEISEERAAKILRKWA 563 >gi|325291912|ref|YP_004277776.1| flagellar MS-ring protein [Agrobacterium sp. H13-3] gi|325059765|gb|ADY63456.1| flagellar MS-ring protein [Agrobacterium sp. H13-3] Length = 560 Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust. Identities = 272/558 (48%), Positives = 393/558 (70%), Gaps = 11/558 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M +L+Q+ Q K+ +LG+TR+L+L V ++ + + +AA +VN P Y+ LYV LE SD+ Sbjct: 1 MNLLNQIPQVLKNFAALGQTRLLMLGGVGILSMAIILAAALYVNRPAYETLYVGLEKSDL 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 N+IS+AL+EA +DF++ +G+S+ VP + KAR+ LA +GLP S+ N+GYELFD V S Sbjct: 61 NKISIALAEAGLDFQVGTDGASLQVPVGLTSKARLLLAERGLPDSA-NAGYELFDNVGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEI+R+IQ I GI AARVHIVMPD+G+FR+ +PTASVMIRA Sbjct: 120 GLTSFMQEVTRVRALEGEISRSIQQIDGIAAARVHIVMPDVGNFRRGEQKPTASVMIRAN 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239 + K++ +IRHLVA+AVP L++ DVT+LDSTG+LL + +++ + +SL++ Q +Q Sbjct: 180 ATAGRKASASIRHLVASAVPGLEVDDVTLLDSTGQLLASGDDVTNAAMNRSLTLAQNVQQ 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 EI NI+KALA FLG+DNFRS+V A+LN D++QI+E VYDP+S+VERS+R K+ Q+S+ Sbjct: 240 EITTNIDKALAPFLGMDNFRSSVTAQLNTDSRQIQETVYDPESRVERSVRTVKEDQKSQE 299 Query: 300 SQPESAVTVEQNMPHVSDR-KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 +QP++A TVEQN+P + + P+S + + KKEEQ+NYEIN+K++AT + Y +E++S Sbjct: 300 TQPDTAATVEQNVPQAAPQGGAGGPQSSDQSAKKEEQTNYEINSKTVATVKNGYTVEKIS 359 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 +AVVVNKGR+ +++G DQ KID+YLAE+ KIV++A G++S RGD +T+T+MDFLE QL Sbjct: 360 VAVVVNKGRIAKMVGEPVDQAKIDAYLAEMQKIVTSAAGVSSDRGDIVTLTAMDFLETQL 419 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG----EV 474 + M++LSR+ A +IN+L F+ LV +LG+ L R + A G E Sbjct: 420 LDEAASGPGIMEVLSRNSAGIINSLAFVAVAFLVVWLGVRPLVRTVTGNGAAAGQISQET 479 Query: 475 GGKSILSPPPISSAVTTGLMP--NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 G + P A GLM + DS++ D+ + + + N V + + RL Sbjct: 480 AGLELPDFSPGMDAGAGGLMEGFGADFGFDSTD-DLLAGG-DSEGTFNRRVREGPERRLS 537 Query: 533 HMIEINEERFAKILRKWA 550 M+EI+EER AKILRKWA Sbjct: 538 RMVEISEERAAKILRKWA 555 >gi|222084850|ref|YP_002543379.1| flagellar M-ring protein [Agrobacterium radiobacter K84] gi|221722298|gb|ACM25454.1| flagellar M-ring protein [Agrobacterium radiobacter K84] Length = 559 Score = 522 bits (1345), Expect = e-146, Method: Compositional matrix adjust. Identities = 276/567 (48%), Positives = 395/567 (69%), Gaps = 30/567 (5%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M +L+QL+ F++ +LGRTR+L LA V ++ + L + A +VN P + LYV L+ +D+ Sbjct: 1 MNLLNQLVPLFRNLQNLGRTRLLTLAGVGILSVALVLFAALYVNKPAQETLYVGLDATDL 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 N+IS+AL+EA I+F++ +G+S++VP+ M GKAR LA +GLP+S+ N+GYELFD V S Sbjct: 61 NQISIALAEAKINFQVGADGTSLTVPTGMTGKARALLAERGLPNST-NAGYELFDNVGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEI RTI SISGI AARVHIVM D+G+FRK +PTASVMIRA Sbjct: 120 GLTSFMQEVTRVRALEGEIGRTITSISGISAARVHIVMQDVGNFRKADQKPTASVMIRAN 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQH 239 + K+A+AIRHLVA+AVP L++ DVT+LDSTG+LL + + + N L ++L IVQ +Q Sbjct: 180 AEAARKAAQAIRHLVASAVPGLEVDDVTILDSTGQLLASGDDQSNGALNRNLGIVQNVQG 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 EI NI+KALA FLG+DNFRS+V A+LN D+QQ++E YDP+SKVERS+R +K+AQ+S+ Sbjct: 240 EIASNIDKALAPFLGMDNFRSSVTAQLNTDSQQVQETTYDPESKVERSVRTTKEAQKSQQ 299 Query: 300 SQPESAVTVEQNMPHVSDRKVP-LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 Q ++A TVEQN+P + + P S + TDK+EEQ+NYEIN+K+ AT ++Y++E+LS Sbjct: 300 RQSDTAATVEQNIPQAAPQAGGNGPTSNDQTDKREEQTNYEINSKTTATVRNSYRIEKLS 359 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 +AVVVN+GR+ +++G+ AD K+D+Y+AE+ KIV+ A G++ RGD +T+ +MDFL+ QL Sbjct: 360 VAVVVNRGRIAQMVGQPADPAKVDAYIAEMQKIVATAAGLDPSRGDVVTVNAMDFLDTQL 419 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL-RRLHN------------ 465 + ++ MD+LSR+ A +IN+L F+ +L+ +LG L R L Sbjct: 420 LDDNASGLNIMDVLSRNIAGIINSLAFVAVAVLIIWLGFRPLIRSLGGGANGTALPDAAG 479 Query: 466 --IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 + D G VGG +A+ G + DS++ D+ + + S N V Sbjct: 480 LELPDFAPGAVGGP--------GAALMDGF--GSDFGFDSTD-DLLTMGED-NSTFNRRV 527 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWA 550 + + RL M+EI+EER AKILRKWA Sbjct: 528 KEGPERRLSRMVEISEERAAKILRKWA 554 >gi|15964399|ref|NP_384752.1| flagellar MS-ring protein [Sinorhizobium meliloti 1021] gi|307311541|ref|ZP_07591182.1| flagellar M-ring protein FliF [Sinorhizobium meliloti BL225C] gi|307318896|ref|ZP_07598327.1| flagellar M-ring protein FliF [Sinorhizobium meliloti AK83] gi|17380368|sp|O54239|FLIF_RHIME RecName: Full=Flagellar M-ring protein gi|15073576|emb|CAC45218.1| Flagellar M-ring transmembrane protein [Sinorhizobium meliloti 1021] gi|306895310|gb|EFN26065.1| flagellar M-ring protein FliF [Sinorhizobium meliloti AK83] gi|306899558|gb|EFN30187.1| flagellar M-ring protein FliF [Sinorhizobium meliloti BL225C] Length = 557 Score = 522 bits (1345), Expect = e-146, Method: Compositional matrix adjust. Identities = 277/556 (49%), Positives = 372/556 (66%), Gaps = 10/556 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + DQ F K+ ++LG+ +++ LA +V I + A +VN P ++ LYV LE SDV Sbjct: 1 MNLFDQFSTFTKNLSNLGQGKLIALAVAGVVAIGFVLGAGIYVNRPSFETLYVGLERSDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +IS+AL+EAN+DF + +G SI VP M GKAR+ LA +GLPSS+ N+GYELFD V S Sbjct: 61 TQISIALAEANVDFEVGTDGGSIQVPVGMTGKARLLLAERGLPSSA-NAGYELFDNVGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEIARTIQ ISGI AARVHIVMP+ GSFRK PTASVMIRA Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQQISGIAAARVHIVMPERGSFRKAEQTPTASVMIRAS 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQH 239 +A +IRHLVA++VP LD+ DVTVLDSTG+LL + + N L +SL +VQ +Q Sbjct: 180 ATVGRSAASSIRHLVASSVPGLDVDDVTVLDSTGQLLASGDDPSNSALNQSLGVVQNVQS 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 ++E I+ ALA FLG+DNFR++V A LN D QQI+E V+DP+S+VERS R+ K+ Q+S Sbjct: 240 DLEKKIDNALAPFLGMDNFRTSVTARLNTDAQQIQETVFDPESRVERSTRVIKEEQKSSQ 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 QP++A TV+QN+P + R +S + +KKEEQ+NYEIN+K+IAT ++Y +ERLSI Sbjct: 300 QQPDNAATVQQNVPQAAPRGGAGQQSSDEAEKKEEQTNYEINSKTIATVKNSYSIERLSI 359 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AVVVN+GRL + G ADQ KID+YL E+ KIVS+A GI+ RGD +T+ +MDF+E QL Sbjct: 360 AVVVNRGRLAAMAGEPADQAKIDAYLQEMQKIVSSAAGIDPGRGDVVTLNAMDFVETQLL 419 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL-RRLHNIDDAKK--GEVGG 476 + M++L+R+ +INAL F+ LV + G+ L R+L A K GE G Sbjct: 420 DQAVPGPGIMEMLTRNLGGIINALAFVAVAFLVVWFGMRPLARQLGFGGQAGKLEGEAAG 479 Query: 477 KSILSPPPISSAVTTGLMP--NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 + P + LM + D + D+ + ++ N V + + RL M Sbjct: 480 LELPDFSPAGAGAGGALMEGFGSDFGFDGGD-DLLNLGD--EAGFNRRVKEGPERRLARM 536 Query: 535 IEINEERFAKILRKWA 550 +EI+EER AKILRKWA Sbjct: 537 VEISEERAAKILRKWA 552 >gi|15887871|ref|NP_353552.1| flagellar MS-ring protein [Agrobacterium tumefaciens str. C58] gi|15155457|gb|AAK86337.1| flagellar M-ring protein [Agrobacterium tumefaciens str. C58] Length = 566 Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust. Identities = 269/558 (48%), Positives = 391/558 (70%), Gaps = 11/558 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M +L+Q+ Q K+ +LG+TR+L+L V ++ + + +AA +VN P Y+ LYV LE SD+ Sbjct: 7 MNLLNQIPQVLKNVAALGQTRLLMLGGVGVLSMAIILAAALYVNRPAYETLYVGLEKSDL 66 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 N+IS+AL+E+ +DF++ +GSS+ VP + KAR+ LA +GLP S+ N+GYELFD V S Sbjct: 67 NKISIALAESGLDFQVGTDGSSLQVPVGLTSKARLLLAERGLPDSA-NAGYELFDNVGSL 125 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEI R+IQ I G+ AARVHIV+PD+G+FR+ +PTASVMIRA Sbjct: 126 GLTSFMQEVTRVRALEGEIGRSIQQIDGVSAARVHIVLPDVGNFRRGEQKPTASVMIRAS 185 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239 + K++ +IRHLVA+AVP L++ DVT+LDSTG+LL + +++ + +SL++ Q +Q Sbjct: 186 ASAGRKASASIRHLVASAVPGLEVDDVTLLDSTGQLLASGDDVTNAAMNRSLTLAQNVQQ 245 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 EI NI+KALA FLG+DNFRS+V A++N D++Q++E VYDP+S+VERS+R K+ Q+S+ Sbjct: 246 EITTNIDKALAPFLGIDNFRSSVTAQINTDSRQVQETVYDPESRVERSVRTVKEDQKSQE 305 Query: 300 SQPESAVTVEQNM-PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 +QP++A TVEQN+ P+S + + KKEEQ+NYEIN+K++AT + Y LE++S Sbjct: 306 TQPDTAATVEQNVPQAAPQGGGGGPQSSDQSAKKEEQTNYEINSKTVATVKNGYTLEKIS 365 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 +AVVVNKGR+ +++G ADQ KID+YLAE+ KIV++A GI+S RGD +T+T+MDFLE QL Sbjct: 366 VAVVVNKGRIAKMVGEPADQAKIDAYLAEMQKIVTSAAGISSDRGDIVTLTAMDFLETQL 425 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 + M++LSR+ A +IN+L F+ LV +LG+ L R + + ++ +S Sbjct: 426 LDEAASGPGVMEVLSRNSAGIINSLAFVAVAFLVVWLGVRPLVRTVTANGSAAAQLSQES 485 Query: 479 I-LSPP---PISSAVTTGLMP--NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 L P P A GLM + DS++ D+ + + N V + + RL Sbjct: 486 AGLELPDFSPGMEAGAGGLMEGFGADFGFDSTD-DLLAGGDG-EGTFNRRVREGPERRLS 543 Query: 533 HMIEINEERFAKILRKWA 550 M+EI+EER AKILRKWA Sbjct: 544 RMVEISEERAAKILRKWA 561 >gi|227820842|ref|YP_002824812.1| flagellar MS-ring protein [Sinorhizobium fredii NGR234] gi|227339841|gb|ACP24059.1| flagellar M-ring protein FliF [Sinorhizobium fredii NGR234] Length = 559 Score = 518 bits (1334), Expect = e-145, Method: Compositional matrix adjust. Identities = 274/557 (49%), Positives = 378/557 (67%), Gaps = 10/557 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + DQ F K+ ++LG+++++ LA +V I + A +VN P Y+ LYV LE SDV Sbjct: 1 MNLFDQFSTFTKNLSNLGQSKLIALAVAGIVAIGFVLGAAIYVNKPAYETLYVGLERSDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +IS+AL+EAN+DF + +G SI VP M GKAR+ LA +GLPSS+ N+GYELFD V S Sbjct: 61 TQISIALAEANLDFEVGSDGGSIQVPVGMTGKARLLLAERGLPSSA-NAGYELFDNVGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEIARTIQ ISGI AARVHIVMP+ GSFRK PTASVMIRA Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQQISGIAAARVHIVMPERGSFRKAEQTPTASVMIRAS 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQH 239 +A +IRHLVA++VP LD+ DVT+LDSTG+LL + + N L +SL +VQ +Q Sbjct: 180 ATVGRGAASSIRHLVASSVPGLDIDDVTILDSTGQLLASGDDPANSALNQSLGVVQNVQT 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 ++E I+ ALA FLG+DNFR++V A LN D QQI+E V+DP+S+VERS R+ K+ Q+S Sbjct: 240 DLEKKIDNALAPFLGMDNFRTSVTASLNTDAQQIQETVFDPESRVERSTRVIKEEQKSSQ 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 QP++A TV+QN+P + R +S + KKEEQ+NYEIN+K+IAT ++Y +ERLSI Sbjct: 300 QQPDNAATVQQNVPQAAPRGGAGQQSNDEAAKKEEQTNYEINSKTIATVKNSYSIERLSI 359 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AVVVN+GRL ++G ADQ KID+YL ++ KIV++A G+++ RGD +T+ +MDF+E QL Sbjct: 360 AVVVNRGRLAAMVGEGADQAKIDAYLQDMQKIVASAAGVDTNRGDVVTLNAMDFVETQLL 419 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK---KGEVGG 476 + M++L+R+ +IN+L F++ LV +LG+ L R +GE G Sbjct: 420 DQAVAGPGVMEMLTRNLGGIINSLAFILVAFLVVWLGMRPLARQMGFGGQSGHLEGEGAG 479 Query: 477 KSILS-PPPISSAVTTGLMP--NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 + P +SA LM + DS++ D+ + S + + N V + + RL Sbjct: 480 LELPDFSPAGASAAGGALMEGFGSDFGFDSTD-DLLNIS-DEGNGFNRRVKEGPERRLAR 537 Query: 534 MIEINEERFAKILRKWA 550 M+EI+EER AKILRKW+ Sbjct: 538 MVEISEERAAKILRKWS 554 >gi|2916780|emb|CAA11947.1| flagellar basal-body MS-ring protein [Sinorhizobium meliloti] Length = 557 Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust. Identities = 275/556 (49%), Positives = 370/556 (66%), Gaps = 10/556 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + DQ F K+ ++LG+ +++ LA +V I + A +VN ++ LYV LE SDV Sbjct: 1 MNLFDQFSTFTKNLSNLGQGKLIALAVAGVVAIGFVLGAGIYVNRRSFETLYVGLERSDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +IS+AL+EAN+DF + +G SI VP M GKAR+ LA +GLPSS+ N+GYELFD V S Sbjct: 61 TQISIALAEANVDFEVGTDGGSIQVPVGMTGKARLLLAERGLPSSA-NAGYELFDNVGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEI RTIQ ISGI AARVHIVMP+ GSFRK PTASVMIRA Sbjct: 120 GLTSFMQEVTRVRALEGEIGRTIQQISGIAAARVHIVMPERGSFRKAEQTPTASVMIRAS 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQH 239 +A +IRHLVA++VP LD+ DVTVLDSTG+LL + + N L +SL +VQ +Q Sbjct: 180 ATVGRSAASSIRHLVASSVPGLDVDDVTVLDSTGQLLASGDDPSNSALNQSLGVVQNVQS 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 ++E I+ ALA FLG+DNFR++V A LN D QQI+E V+DP+S+VERS R+ K+ Q+S Sbjct: 240 DLEKKIDNALAPFLGMDNFRTSVTARLNTDAQQIQETVFDPESRVERSTRVIKEEQKSSQ 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 QP++A TV+QN+P + R +S + +KKEEQ+NYEIN+K+IAT ++Y +ERLSI Sbjct: 300 QQPDNAATVQQNVPQAAPRGGAGQQSSDEAEKKEEQTNYEINSKTIATVKNSYSIERLSI 359 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AVVVN+GRL + G ADQ KID+YL E+ KIVS+A GI+ RGD +T+ +MDF+E QL Sbjct: 360 AVVVNRGRLAAMAGEPADQAKIDAYLQEMQKIVSSAAGIDPGRGDVVTLNAMDFVETQLL 419 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL-RRLHNIDDAKK--GEVGG 476 + M++L+R+ +INAL F+ LV + G+ L R+L A K GE G Sbjct: 420 DQAVPGPGIMEMLTRNLGGIINALAFVAVAFLVVWFGMRPLARQLGFGGQAGKLEGEAAG 479 Query: 477 KSILSPPPISSAVTTGLMP--NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 + P + LM + D + D+ + ++ N V + + RL M Sbjct: 480 LELPDFSPAGAGAGGALMEGFGSDFGFDGGD-DLLNLGD--EAGFNRRVKEGPERRLARM 536 Query: 535 IEINEERFAKILRKWA 550 +EI+EER AKILRKWA Sbjct: 537 VEISEERAAKILRKWA 552 >gi|150395469|ref|YP_001325936.1| flagellar MS-ring protein [Sinorhizobium medicae WSM419] gi|150026984|gb|ABR59101.1| flagellar M-ring protein FliF [Sinorhizobium medicae WSM419] Length = 557 Score = 515 bits (1327), Expect = e-144, Method: Compositional matrix adjust. Identities = 274/557 (49%), Positives = 371/557 (66%), Gaps = 12/557 (2%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + DQ F K+ ++LG+ +++ LA +V I + A +VN P ++ LYV LE SDV Sbjct: 1 MNLFDQFSTFTKNLSNLGQGKLIALAVAGIVAIGFVLGAGVYVNRPSFETLYVGLERSDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +IS+AL+EAN+DF + +G SI VP M GKAR+ LA +GLPSS+ N+GYELFD V S Sbjct: 61 TQISIALAEANVDFEVGTDGGSIQVPVGMTGKARLLLAERGLPSSA-NAGYELFDNVGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEIARTIQ ISGI AARVHIVMP+ GSFRK PTASVMIRA Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQQISGIAAARVHIVMPERGSFRKAEQTPTASVMIRA- 178 Query: 181 NPSVYKSAEA-IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQ 238 + +V +SA A IRHLVA++VP LD+ DVTVLDSTG+LL + + N L +SL +VQ +Q Sbjct: 179 SATVGRSAAASIRHLVASSVPGLDVDDVTVLDSTGQLLASGDDPANSALNQSLGVVQNVQ 238 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 ++E I+ ALA FLG+DNFR++V A LN D QQI+E V+DP+S+VERS R+ K+ Q+S Sbjct: 239 TDLEKKIDNALAPFLGMDNFRTSVTARLNTDAQQIQETVFDPESRVERSTRVIKEEQKSS 298 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 QP++A TV+QN+P + +S + KKEEQ+NYEIN+K+IAT ++Y +ERLS Sbjct: 299 QQQPDNAATVQQNVPQAAPTGGAGQQSSDEAAKKEEQTNYEINSKTIATVKNSYSIERLS 358 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 IAVVVN+GRL + G ADQ KID+YL ++ KIV++A GI+ RGD +T+ +MDF+E QL Sbjct: 359 IAVVVNRGRLAAMAGEPADQAKIDAYLVQMQKIVASAAGIDPGRGDVVTLNAMDFVETQL 418 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK---KGEVG 475 + M++L+R+ +INAL F+ LV + G+ L R GE Sbjct: 419 LDQAVPGPGMMEVLTRNIGGIINALAFVAVAFLVVWFGMRPLARQMGFGGQSGQLAGEAA 478 Query: 476 GKSILSPPPISSAVTTGLMP--NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 G + P ++ LM + D + D+ + ++ N V + + RL Sbjct: 479 GLELPDFSPAAAGAGGALMEGFGSDFGFDGGD-DLLNLGD--EAGFNRRVKEGPERRLAR 535 Query: 534 MIEINEERFAKILRKWA 550 M+EI+EER AKILRKWA Sbjct: 536 MVEISEERAAKILRKWA 552 >gi|163757999|ref|ZP_02165087.1| flagellar M-ring protein [Hoeflea phototrophica DFL-43] gi|162284288|gb|EDQ34571.1| flagellar M-ring protein [Hoeflea phototrophica DFL-43] Length = 560 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 252/561 (44%), Positives = 366/561 (65%), Gaps = 11/561 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M++L+QL Q K+ SLG+ R+L L V + L +AA F+N P + LY+ L D+ Sbjct: 1 MSLLNQLSQIGKNLASLGQARMLTLGGVGAASVALIIAAALFLNKPARETLYIGLSGEDM 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +IS+ L+E+NIDF +G+SI+VP+ M +AR+ LA +GLPSS++ +GYELFDKV S Sbjct: 61 TQISLVLAESNIDFASGLDGNSITVPAGMTSRARMLLAERGLPSSNT-AGYELFDKVGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEIARTIQSI+GI AARVH+VM D G+FR+ +P+ASVM+R Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQSINGISAARVHLVMADRGNFRRGEQQPSASVMVRTG 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239 ++A +IRHLVA++VP L++ +VTVLD+TG+LL T ++ + L +SLSIVQ +Q+ Sbjct: 180 TNLAPRTANSIRHLVASSVPGLNVDEVTVLDATGQLLATGDDFSNSNLNRSLSIVQLVQN 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 E+E NI KALA FLG++NFR++V A +N D+QQ++E ++DP+S+VERS R++++ Q S Sbjct: 240 EVETNIEKALAPFLGIENFRASVTATVNTDSQQVQETIFDPESRVERSTRVTRENQTSNQ 299 Query: 300 SQPESAVTVEQNMPH--VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 S ++ TVEQN+P + P+S E ++KEEQ+NYEIN+K I+T ++Y +E L Sbjct: 300 SATDTPATVEQNIPDQGPAAGGAAGPQSSELAERKEEQTNYEINSKVISTVRNSYTVEGL 359 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 S+AVVVN+ R+ ++ G + + + ++LAE+ +V+ A G++ RGD IT MDF+ ++ Sbjct: 360 SVAVVVNRARIADMYGGAPTEEQTAAFLAEVQTLVNLAAGVDDERGDRANITVMDFMASE 419 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 L + Q F D L H T+INA+ F+ +L+ G L L A++ E Sbjct: 420 LLTADAAQGGFGDTLKTHIGTIINAIAFITVAVLLIMFGFRPL--LGAGKTAEQAEDAVD 477 Query: 478 SI-LSPPPISSAV--TTGLMPNDNIALD-SSNQDIFSHSRNLQS-RINSYVSKQSDLRLL 532 I L P S A G MP + D +D S +S N V + + RL Sbjct: 478 DIGLELPDFSPAAMGGPGAMPMEGFGADFGFGEDGDSELEMEESGSFNRRVKEGPERRLA 537 Query: 533 HMIEINEERFAKILRKWARSE 553 M+EINEER AKILR+W+ E Sbjct: 538 RMVEINEERAAKILRQWSSGE 558 >gi|110632647|ref|YP_672855.1| flagellar MS-ring protein [Mesorhizobium sp. BNC1] gi|110283631|gb|ABG61690.1| flagellar M-ring protein FliF [Chelativorans sp. BNC1] Length = 545 Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust. Identities = 232/556 (41%), Positives = 349/556 (62%), Gaps = 21/556 (3%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 +QL ++ +LG R+ ++ V+ + + + ++N P Y+ LYV LE SDVN+I Sbjct: 3 EQLRTIVENLRALGPRRLAMMGGVLALTLAVVTGGAIYLNRPAYETLYVGLERSDVNQIG 62 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 + L EA I F + +G+++ VP+ +AR+ LA +GLPSS+ N+GYELFD V S GLT+ Sbjct: 63 LVLGEAGIRFDVVSDGTAVLVPTGKTAEARMLLAEKGLPSSA-NAGYELFDTVGSLGLTT 121 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 FMQE+TRVRALEGEIARTI+SI+GI AARVHIVMP+ G+FR+ G P+ASV+IR Sbjct: 122 FMQEVTRVRALEGEIARTIRSIAGIRAARVHIVMPERGNFRREGQEPSASVVIRTSGIDG 181 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQAIQHEIEM 243 A +IR+LVAAAVP L VTVLDS+G LL A ++ N +S+ I + ++ ++E Sbjct: 182 AAKAASIRYLVAAAVPGLSAEKVTVLDSSGMLLAAGDDPANNTAQRSIGIERTVEAQVEE 241 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 NI +ALA +LG DNFR++V AE+N DT+Q+ E+++DPDS+VERS+++ + A + Sbjct: 242 NIRRALAPYLGPDNFRASVKAEVNTDTRQVEEVIFDPDSRVERSVQIVRTADSATRETAA 301 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 + TV QN+P LPRS E ++++EE +NYE+NTK IAT+ + Y++ RLSIAVVV Sbjct: 302 TPTTVLQNLPQEEPAPAELPRSSEESERREETTNYELNTKRIATSSNGYQVTRLSIAVVV 361 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 N+GRL +LG +A + + + EI +V++A G+N RGD + + +++F++ L Sbjct: 362 NEGRLAAILGDNAAPDALQTRIREIETVVASAAGLNETRGDVLNVAAVEFVDG-LDGVEM 420 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH----ALRRLHNIDDAKKGEVGGKSI 479 + + L RH T+INAL F++ +T+ GL AL R I+ + GE Sbjct: 421 AEPGPLAALGRHSGTMINALAFVLAAFFITWFGLRPLATALTRGPEIEASAAGE------ 474 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 I + G ++ +AL + N S N + ++ + Q+ L M+++NE Sbjct: 475 ----EIQALSQEGA--DERLALTAGNGVQSSEEANDEPQLKIKPAPQA--LLARMVDLNE 526 Query: 540 ERFAKILRKWARSEIE 555 ER A ILRKWAR+E+E Sbjct: 527 ERTADILRKWARAEVE 542 >gi|319781672|ref|YP_004141148.1| flagellar M-ring protein FliF [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167560|gb|ADV11098.1| flagellar M-ring protein FliF [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 548 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 229/556 (41%), Positives = 336/556 (60%), Gaps = 40/556 (7%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 G R+ +LA + ++ + + A ++N P YD LYV L+ +DVN+I + L EA I F Sbjct: 14 GFGVKRLAMLAGIAVLVMGVIGIASVYLNRPAYDTLYVGLDRADVNQIGLVLGEAGIGFD 73 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135 + +G+S+ VP+ +AR+ LA +GLP+S+ N+GYELFD V S GLTSFMQ+ITRVRAL Sbjct: 74 VGADGTSVLVPAGTTAQARMLLAEKGLPTSA-NAGYELFDNVGSLGLTSFMQQITRVRAL 132 Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLV 195 EGEIARTIQSISGI AARVHIVM + +FR+ +P+ASV+IR KSA +IRHLV Sbjct: 133 EGEIARTIQSISGIKAARVHIVMSERANFRRDEQQPSASVVIRYAGIDAEKSAMSIRHLV 192 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERNI-LGKSLSIVQAIQHEIEMNINKALAAFLG 254 AAAVP L VTVLDS+G LL A + N ++L + Q ++ +I NI +AL A+LG Sbjct: 193 AAAVPGLSADKVTVLDSSGNLLAAGDDPSNTSAARTLGVEQTVEAQIGDNIRRALTAYLG 252 Query: 255 VDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPH 314 DNFR++V AE+N DT+Q E ++DP+S+VERS++ + + + Q + +VEQN+P Sbjct: 253 PDNFRASVKAEVNTDTRQTEETIFDPNSRVERSVQSVRANENNNQKQASTPASVEQNLPE 312 Query: 315 VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR 374 P+S D++EE +NYEIN+K IAT + Y + ++SIAVVVN+ RLT +LG+ Sbjct: 313 TQATATDGPQSSSQNDRREEITNYEINSKKIATVSNGYTVTKMSIAVVVNQQRLTTILGK 372 Query: 375 SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSR 434 A +I +AEI K+V++ATG++ +RGD I +++++F++ L Q +D + + Sbjct: 373 DATPEQIAKRVAEIQKMVTSATGLDEKRGDIIDVSAVEFIDG-LDGEAIPQAGMLDSIGQ 431 Query: 435 HFATVINALVFLVGTLLVTFLGLHALRRLH-----------NIDDAKKGEVGGKSILSPP 483 H T+INA F+V LV F GL + + DD ++ S+ +P Sbjct: 432 HAGTMINAGAFIVVVFLVAFFGLRPMAAALTAKAAPALAGPSFDDVQR------SLPTPE 485 Query: 484 PISSA--VTTGLMPNDN---IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 +++ G +P LD Q I ++ RL M+++N Sbjct: 486 AMAATDNAAVGALPGTRPGPTPLDDLRQKIRPAPQD---------------RLARMVDLN 530 Query: 539 EERFAKILRKWARSEI 554 EER A+ILRKWA E+ Sbjct: 531 EERTAQILRKWASQEV 546 >gi|13472585|ref|NP_104152.1| flagellar MS-ring protein [Mesorhizobium loti MAFF303099] gi|14023331|dbj|BAB49938.1| flagellar basal-body MS-ring protein; FliF [Mesorhizobium loti MAFF303099] Length = 549 Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust. Identities = 231/553 (41%), Positives = 333/553 (60%), Gaps = 33/553 (5%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 G R+ +LA + ++ + + A ++N P YD LYV L+ +DVN+I + L EA I F Sbjct: 14 GFGVKRLAMLAGIAVLVMGVIGIASVYLNRPAYDTLYVGLDRADVNQIGLVLGEAGIGFD 73 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135 + +G+S+ VP+ +AR+ LA +GLP+S+ N+GYELFD V + GLTSFMQ+ITRVRAL Sbjct: 74 VGSDGTSVLVPAGTTAQARMLLAEKGLPTSA-NAGYELFDNVGAMGLTSFMQQITRVRAL 132 Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLV 195 EGEIARTIQSISGI AARVHIVM + +FR+ +P+ASV+IR KSA++IRHLV Sbjct: 133 EGEIARTIQSISGIKAARVHIVMSERANFRRDEQQPSASVVIRYAGIDAEKSAQSIRHLV 192 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERNI-LGKSLSIVQAIQHEIEMNINKALAAFLG 254 AAAVP L VTVLDS G LL A + N ++L + Q ++ +I NI +AL +LG Sbjct: 193 AAAVPGLSADKVTVLDSNGNLLAAGDDPSNTSAARTLGVEQTVEAQIGDNIRRALTPYLG 252 Query: 255 VDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPH 314 DNFR++V AE+N DT+Q E ++DP+S+VERS++ + + S Q + +VEQN+P Sbjct: 253 PDNFRASVKAEVNTDTRQTEETIFDPNSRVERSVQSVRANENSNQKQASTPASVEQNLPE 312 Query: 315 VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR 374 P++ D+KEE +NYEIN+K IAT + Y + ++SIAVVVN+ RL +LG+ Sbjct: 313 TQATSTEGPQTTSANDRKEEITNYEINSKKIATVSNGYTVTKMSIAVVVNQDRLKTILGK 372 Query: 375 SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSR 434 A +I +AEI K+V++ATG++ +RGD I +++++F++ L Q +D + + Sbjct: 373 DATPEQIAKRVAEIQKMVTSATGLDDKRGDVIDVSAVEFIDG-LDGEAIPQAGMLDSIGQ 431 Query: 435 HFATVINALVFLVGTLLVTFLGLHAL------RRLHNIDDAKKGEVGGKSILSPPPISSA 488 H T+INA F+V LV F GL + R + EV +S+ +P +SA Sbjct: 432 HAGTLINAGAFIVVVFLVAFFGLRPMAAALTARATPALSGPNFDEV-QRSLPTPEAAASA 490 Query: 489 VTT-------GLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 G P N LD Q I + RL M+++NEER Sbjct: 491 DAGAAIGALPGSRPGTN-PLDDLRQKIRPAPQE---------------RLARMVDLNEER 534 Query: 542 FAKILRKWARSEI 554 A+ILRKWA E+ Sbjct: 535 TAQILRKWAAQEV 547 >gi|260466610|ref|ZP_05812798.1| flagellar M-ring protein FliF [Mesorhizobium opportunistum WSM2075] gi|259029616|gb|EEW30904.1| flagellar M-ring protein FliF [Mesorhizobium opportunistum WSM2075] Length = 549 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 226/543 (41%), Positives = 326/543 (60%), Gaps = 13/543 (2%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 G R+ +LA + ++ + + A ++N P YD LYV L+ SDVN+I + L EA I F Sbjct: 14 GFGVKRLAMLAGIAVLVMGVIGIASVYLNRPAYDTLYVGLDRSDVNQIGLVLGEAGIGFD 73 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135 + +G+S+ VP+ +AR+ LA +GLP+S+ N+GYELFD V + GLTSFMQ+ITRVRAL Sbjct: 74 VGADGTSVLVPAGTTAQARMLLAEKGLPTSA-NAGYELFDNVGAMGLTSFMQQITRVRAL 132 Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLV 195 EGEIARTIQSI+GI AARVHIVM + +FR+ +P+ASV+IR KSA +IRHLV Sbjct: 133 EGEIARTIQSIAGIKAARVHIVMSERANFRRDEQQPSASVVIRYAGIDAEKSAMSIRHLV 192 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERNI-LGKSLSIVQAIQHEIEMNINKALAAFLG 254 AAAVP L VTVLDS G LL A + N ++L + Q ++ +I NI +AL +LG Sbjct: 193 AAAVPGLSADKVTVLDSNGNLLAAGDDPSNTSAARTLGVEQTVEAQIGDNIRRALTPYLG 252 Query: 255 VDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPH 314 DNFR++V AE+N DT+Q E ++DP+S+VERS++ + + S Q + +VEQN+P Sbjct: 253 PDNFRASVKAEVNTDTRQTEETIFDPNSRVERSVQSVRANENSNQKQASTPASVEQNLPE 312 Query: 315 VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR 374 P++ D+KEE +NYEIN+K IAT + Y + ++SIAVVVN+ RL +LG+ Sbjct: 313 TQAASTEGPQTSSANDRKEEITNYEINSKKIATVSNGYTVTKMSIAVVVNQDRLKTILGK 372 Query: 375 SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSR 434 A +I +AEI K+VS+ATG + +RGD I +++++F++ L Q +D + + Sbjct: 373 DATPEQIAKRVAEIQKMVSSATGFDDKRGDVIDVSAVEFIDG-LDGEAVPQAGMLDSIGQ 431 Query: 435 HFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLM 494 H T+INA F+V LV F GL + + G P V L Sbjct: 432 HAGTLINAGAFIVVVFLVAFFGLRPMAAALTAKATPTPAISG-------PNFDEVQRSLP 484 Query: 495 PNDNIALDSSNQDIFSHSRNLQSRINSYVSK---QSDLRLLHMIEINEERFAKILRKWAR 551 + A ++ +R + ++ K RL M++INEER A+ILRKWA Sbjct: 485 TPEAAASANAAVGALPSARPGATPLDDLRQKIRPAPQERLARMVDINEERTAQILRKWAA 544 Query: 552 SEI 554 E+ Sbjct: 545 QEV 547 >gi|319409176|emb|CBI82820.1| Flagellar M-ring protein [Bartonella schoenbuchensis R1] Length = 555 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 225/558 (40%), Positives = 338/558 (60%), Gaps = 25/558 (4%) Query: 3 ILDQLLQFFKS-GTSLGRTRILILASVILVPIMLF---MAARFFVNSPHYDNLYVKLEVS 58 +LD+LL F S G +L + + L ++ LV I LF + + F++ P Y+ LY+ L Sbjct: 1 MLDKLLAFLSSSGQALQKLGVKRLVALGLVGITLFGTILFSSFYLTRPSYETLYIGLSRD 60 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 DVNR+ VAL E I F +S +GSSI VP KAR+ LA +GLP+S+ N+GYELFD + Sbjct: 61 DVNRMGVALGETGIAFDVSSDGSSIQVPVGQAEKARMFLAEKGLPTSN-NAGYELFDNMG 119 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178 S GLTSFMQEITR RALEGEIARTIQ + G+ AARVHIV+PD GSFRK +PTASV+IR Sbjct: 120 SLGLTSFMQEITRQRALEGEIARTIQVVQGVKAARVHIVLPDKGSFRKANQKPTASVVIR 179 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIV-QAI 237 +SA++IR LV+AAVP+L+ VTV+D+ G+LL + N ++++ Q + Sbjct: 180 TDGGFSAESAQSIRQLVSAAVPSLEASSVTVMDTRGQLLASGVDAANGASVRMALLEQQV 239 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 +I+ NI K L +LG+D+F+++V +L+ + QQI E V+DP+S+V RS+R +D S Sbjct: 240 ASQIDANIRKQLVPYLGLDHFQTSVQVDLDTNRQQINETVFDPESQVVRSVRSVRDQADS 299 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 + S+ AV VEQN+P RS + D++EE +NYEIN+K I+T D Y +++L Sbjct: 300 QNSRNNDAVGVEQNIPQEEIANGGGERSTDKKDRREETTNYEINSKIISTVKDGYSVKKL 359 Query: 358 SIAVVVNKGRLTEVLGRSAD-QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 ++A+VV++ RL G + D + I+ + I ++V+ A G++ +RGD I +T++DF+ Sbjct: 360 AVAIVVDRARLALAKGNNGDSESFINDEINRIQQMVATAAGLDPKRGDVINVTAVDFMGY 419 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR-----LHNIDDAKK 471 + +Q LS + +T +N L +V LL+ FLG+ L R +D+ + Sbjct: 420 SDKDLTPMQTPIWKSLSPYLSTFVNGLALVVAVLLILFLGVRPLMREMREGQKALDNEQN 479 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 G + + P + + G A D + D+ S R V+ Q+ RL Sbjct: 480 ALAGLQDV--PALENQSNINGEFGGIAGAKDDTLNDLRSRMR---------VAPQN--RL 526 Query: 532 LHMIEINEERFAKILRKW 549 MIEI+E+RFA++LR+W Sbjct: 527 EKMIEIDEQRFAEVLREW 544 >gi|319898649|ref|YP_004158742.1| flagellar M-ring protein [Bartonella clarridgeiae 73] gi|319402613|emb|CBI76158.1| Flagellar M-ring protein [Bartonella clarridgeiae 73] Length = 557 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 216/556 (38%), Positives = 337/556 (60%), Gaps = 18/556 (3%) Query: 3 ILDQLLQFFKSGTS----LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 ++D+ L F S + LG R++ L + L + + F++ P Y+ LYV L Sbjct: 1 MIDKFLAFLSSSGNALHKLGAKRLIALGIIGLTLFGTILFSSFYLTRPVYETLYVGLSRD 60 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 DVNR+ +AL E I F +S +GS++ VP +AR+ LA +GLP+S+ N+GYELFD + Sbjct: 61 DVNRMGMALGEVGIAFDVSADGSTVQVPVGQAEQARMFLAEKGLPTSN-NAGYELFDNMG 119 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178 S GLTSFMQEITR RALEGEIARTIQ + G+ AARVHIV+PD GSFRK +PTASV+IR Sbjct: 120 SLGLTSFMQEITRQRALEGEIARTIQVVQGVKAARVHIVLPDKGSFRKANQKPTASVVIR 179 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL---SIVQ 235 +SA++IR LVAAAVP+L+ VTV+D+ G+LL + N G S+ S+ Q Sbjct: 180 TNGGFAVESAQSIRQLVAAAVPSLEASSVTVMDTRGQLLASGVDAMN--GTSMMMASLEQ 237 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 + +I+ NI K L +LG+D+F+++V L+ D +Q E V+DP+S+V RS+R +D Sbjct: 238 QVASQIDANIRKQLVPYLGLDHFQTSVQVVLDTDRRQTNETVFDPESQVVRSVRSVRDQA 297 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 S+ ++ AV VEQN+P RS + D++EE +NYEIN+K+I+T D Y ++ Sbjct: 298 DSQNNRNSDAVGVEQNIPQEEIANGSGERSTDKKDRREETTNYEINSKTISTVSDGYSVK 357 Query: 356 RLSIAVVVNKGRLT-EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 +L++A+VV++ RLT + + ++ + I ++V+ A G++ +RGD I +T++DF+ Sbjct: 358 KLAVAIVVDRARLTLPDSTKPTSESALNEEINRIQQMVATAAGLDPKRGDIINVTAVDFI 417 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 + + VQ+ +LSR+ + +IN + ++ LL+ FLG+ L R + + KK Sbjct: 418 GHTESDMIPVQMPLWKLLSRYTSALINGVALVIAVLLILFLGVRPLMR--EMREGKKALE 475 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIA-LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 K+ ++ A+ N + + ++ D NL++R+ V Q+ RL Sbjct: 476 NSKNAMADLENIPALEHQYQANAEFSGITGTSDDTHDALHNLRNRMR--VPPQN--RLEQ 531 Query: 534 MIEINEERFAKILRKW 549 MI ++EERFA +LR+W Sbjct: 532 MIAMDEERFAGVLREW 547 >gi|121602745|ref|YP_989390.1| flagellar MS-ring protein [Bartonella bacilliformis KC583] gi|120614922|gb|ABM45523.1| flagellar M-ring protein FliF [Bartonella bacilliformis KC583] Length = 553 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 219/560 (39%), Positives = 339/560 (60%), Gaps = 29/560 (5%) Query: 3 ILDQLLQFFKSGTS----LGRTRILILASVILVPIMLF---MAARFFVNSPHYDNLYVKL 55 +LD+ F S S LG R++ L LV + LF + + F++ P ++ LYV L Sbjct: 1 MLDKFFVFLSSSGSALYKLGAKRLIALG---LVGVTLFGTILFSSFYLTRPSHETLYVGL 57 Query: 56 EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115 DVNRI +AL EA I F +S +G S+ VP AR+ LA +GLP+S+ N+GYELFD Sbjct: 58 SRDDVNRIGMALGEAGIAFDVSSDGGSVQVPVGQAEHARMFLAEKGLPTSN-NAGYELFD 116 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 + S GLTSFMQEITR RALEGEIARTIQ++ G+ AARVHIV+PD GSFR+ +PTASV Sbjct: 117 NMGSLGLTSFMQEITRQRALEGEIARTIQAVQGVKAARVHIVLPDKGSFRRANQKPTASV 176 Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ 235 +IR +SA++IRHLVAAAVP+L+ VTV+D+ G++L + + + + ++ Sbjct: 177 VIRTDGGFSVESAQSIRHLVAAAVPSLEASSVTVMDTRGQMLASGV---DAINGAPVVMA 233 Query: 236 AIQH----EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 +++H +I+ NI K L +LG+D+F+++V L+ D +QI E ++DP+S+V RSIR Sbjct: 234 SLEHQVASQIDANIRKQLVPYLGLDHFQTSVQVALDTDRRQINETIFDPESQVVRSIRSV 293 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 +D S+ S+ AV VEQN+P S + D++EE +NYEIN+K I+T D Sbjct: 294 RDQADSQNSRNSDAVGVEQNIPQEEIANGSGETSTDKKDRREETTNYEINSKIISTVRDG 353 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSA-DQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 Y +++L+IA+VV++ RL G + + I+ + I ++VSAA G++ RGD I +T+ Sbjct: 354 YSVKKLAIAIVVDRARLVPANGETTVSEDFINDEVNRIQQMVSAAAGLDPNRGDIINVTA 413 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 +DF+ + + ++ +SR+ V+N + ++ LL+ FLG+ L R + + + Sbjct: 414 VDFIGHNDADLTPIETPLWKSVSRYIPGVVNGVALVIAVLLILFLGVRPLMR--EMREGQ 471 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNI-ALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 K G++ L+ A+ + + +N D R+L++R+ V Q+ Sbjct: 472 KARNSGENALAGLGAVPALDNQSQAAAGVGGVTKTNDDTL---RDLRNRMR--VPPQN-- 524 Query: 530 RLLHMIEINEERFAKILRKW 549 RL MI+++EERFA ILR+W Sbjct: 525 RLEKMIDMDEERFAGILREW 544 >gi|319403971|emb|CBI77559.1| Flagellar M-ring protein [Bartonella rochalimae ATCC BAA-1498] Length = 554 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 222/563 (39%), Positives = 336/563 (59%), Gaps = 35/563 (6%) Query: 3 ILDQLLQFFKSGTS----LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 +LD+ L F S + LG R++ L V L + + F++ P Y+ LYV L Sbjct: 1 MLDKFLAFLSSSGNALHKLGVKRLIALGMVGLTLFGTILFSSFYLTRPIYEILYVGLSRD 60 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 DVNR+ +AL EA I F +S +GS++ VP +AR+ LA +GLP+S+ N+GYELFD + Sbjct: 61 DVNRMGMALGEAGIAFDVSSDGSTVQVPVGQAEQARMFLAEKGLPTSN-NAGYELFDNMG 119 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178 S GLTSFMQEITR RALEGEIARTIQ++ G+ AARVHIV+PD GSFRK +PTASV+IR Sbjct: 120 SLGLTSFMQEITRQRALEGEIARTIQAVQGLKAARVHIVLPDKGSFRKANQKPTASVVIR 179 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL---SIVQ 235 + + A++IR LVAAAVP+L+ VTV+D+ G+LL + N G S+ S+ Q Sbjct: 180 TNSGFAVEFAQSIRQLVAAAVPSLEASSVTVMDTRGQLLASGVDAMN--GASMMMASLEQ 237 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 + +I+ NI K L +LG+D+F+++V L+ D +Q E V+DP+S+V RS+R +D Sbjct: 238 QVASQIDANIRKQLVPYLGLDHFQTSVQVVLDTDRRQTNETVFDPESQVVRSVRSVRDQA 297 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 S+ ++ AV VEQN+P RS + D++EE +NYEIN+K+I+T D Y ++ Sbjct: 298 DSQNNRNSDAVGVEQNIPQEEIANGGGERSTDKKDRREEITNYEINSKTISTVSDGYSVK 357 Query: 356 RLSIAVVVNKGRLTEVLG-RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 +L++A+VV++ RL G + + ++ + I ++V+ A G++ +RGD I +T++DF+ Sbjct: 358 KLAVAIVVDRARLVLPDGTKPTSENALNDEVNRIQQMVATAAGLDPKRGDIINVTAVDFV 417 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR--------LHNI 466 N + VQ LSR+ + +IN + ++ L+ FLG+ L R L N Sbjct: 418 GNSEADMAPVQEPLWKSLSRYTSGLINGVALVIAVFLILFLGVRPLMREMREGKKALENS 477 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 ++A G +G L +A G+ +N L NL++R+ V Q Sbjct: 478 ENAVAG-LGNIPALEHQYQDNAEFGGVTGTNNDTL-----------HNLRNRMR--VPPQ 523 Query: 527 SDLRLLHMIEINEERFAKILRKW 549 + RL MI ++EERFA +LR+W Sbjct: 524 N--RLEQMIAMDEERFAGVLREW 544 >gi|319406987|emb|CBI80624.1| Flagellar M-ring protein [Bartonella sp. 1-1C] Length = 554 Score = 366 bits (940), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 221/563 (39%), Positives = 334/563 (59%), Gaps = 35/563 (6%) Query: 3 ILDQLLQFFKSGTS----LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 +LD+ F S + LG R++ L V L + + F++ P Y+ LYV L Sbjct: 1 MLDKFWVFLSSSGNALHKLGVKRLIALGMVGLTLFGTILFSSFYLTRPIYETLYVGLSRD 60 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 DVNR+ +ALSEA I F +S +G ++ VP +AR+ LA +GLP+S+ N+GYELFD + Sbjct: 61 DVNRMGMALSEAGIAFDVSSDGGTVQVPVGQAEQARMFLAEKGLPTSN-NAGYELFDNMG 119 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178 S GLTSFMQEITR RALEGEIARTIQ + G+ AARVHIV+PD GSFRK +PTASV+IR Sbjct: 120 SLGLTSFMQEITRQRALEGEIARTIQVVQGVKAARVHIVLPDKGSFRKANQKPTASVVIR 179 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL---SIVQ 235 + + A++IR LVAAAVP+L+ VTV+D+ G+LL + N G S+ S+ Q Sbjct: 180 TNSSFSVEFAQSIRQLVAAAVPSLEASSVTVMDTRGQLLASGVDAMN--GASMMMASLEQ 237 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 + +I+ NI K L +LG+D+F+++V L+ D +Q E V+DP+S+V RS+R +D Sbjct: 238 QVASQIDANIRKQLVPYLGLDHFQTSVQVVLDTDRRQTNETVFDPESQVVRSVRSVRDQA 297 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 S+ ++ AV VEQN+P RS + D++EE +NYEIN+K+I+T D Y ++ Sbjct: 298 DSQNNRNSDAVGVEQNIPQEEIANGGGERSTDKKDRREEITNYEINSKTISTVSDGYSVK 357 Query: 356 RLSIAVVVNKGRLTEVLG-RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 +L++A+VV++ RL G + + ++ + I ++V+ A G++ +RGD I +T++DF+ Sbjct: 358 KLAVAIVVDRARLVLPDGTKPTSENALNDEVNRIQQMVATAAGLDPKRGDIINVTAVDFV 417 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR--------LHNI 466 N + +Q LSR+ + +IN + ++ L+ FLG+ L R L N Sbjct: 418 GNSEADMAPIQEPLWKSLSRYTSGLINGVALVIAVFLILFLGVRPLMREMREGKKALENS 477 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 +A G +G L +A G+ +N D S NL++R+ V Q Sbjct: 478 ANAVAG-LGNIPALEHQYQDNAEFGGVT--------GTNNDTLS---NLRNRMR--VPPQ 523 Query: 527 SDLRLLHMIEINEERFAKILRKW 549 + RL MI ++EERFA +LR+W Sbjct: 524 N--RLEQMIAMDEERFAGVLREW 544 >gi|319405414|emb|CBI79033.1| Flagellar M-ring protein FliF [Bartonella sp. AR 15-3] Length = 554 Score = 366 bits (940), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 217/556 (39%), Positives = 335/556 (60%), Gaps = 21/556 (3%) Query: 3 ILDQLLQFFKSGTS----LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 + D+ L F S + LG R++ L V L + + F++ P Y+ LYV L Sbjct: 1 MFDKFLAFLSSSGNALYKLGVKRLIALGMVGLTLFGTILFSSFYLTRPVYETLYVGLSRD 60 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 DVNR+ +AL EA I F +S +GS + VP +AR+ LA +GLP+S+ N+GYELFD + Sbjct: 61 DVNRMGMALGEAGIAFDVSSDGSVVQVPVGQAEQARMFLAEKGLPTSN-NAGYELFDNMG 119 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178 S GLTSFMQEITR RALEGEIARTIQ + G+ AARVHIV+PD GSFRK +PTASV+IR Sbjct: 120 SLGLTSFMQEITRQRALEGEIARTIQVVQGVKAARVHIVLPDKGSFRKANQKPTASVVIR 179 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL---SIVQ 235 + +SA++IR LVAAAVP+L+ VTV+D+ G+LL + N G S+ S+ Q Sbjct: 180 TNSGFAVESAQSIRQLVAAAVPSLEASSVTVMDTRGQLLASGVDAMN--GASIMMASLEQ 237 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 + +I+ NI K L +LG+D+F+++V L+ D +Q E V+DP+S+V RS+R +D Sbjct: 238 QVASQIDANIRKQLVPYLGLDHFQTSVQVVLDTDRRQTNETVFDPESQVVRSVRSVRDQA 297 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 S+ ++ AV VEQN+P S + D++EE +NYEIN+K+I+T D Y ++ Sbjct: 298 DSQNNRNSDAVGVEQNIPQEEIANGGGETSTDKKDRREEITNYEINSKTISTVSDGYSVK 357 Query: 356 RLSIAVVVNKGRLTEVLG-RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 +L++A+VV++ RL G + + ++ + I ++V+AA G++ +RGD I +T++DF+ Sbjct: 358 KLAVAIVVDRARLILPDGTKPTSENALNDEVNRIQQMVAAAAGLDPKRGDIINVTAVDFV 417 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 + + VQ LSR+ + +IN + ++ L+ FLG+ L R + + KK Sbjct: 418 GHSEADMAPVQTPIWKSLSRYTSGLINGVALVIAVFLILFLGVRPLMR--EMREGKKALE 475 Query: 475 GGKSILSPPPISSAVTTGLMPNDNI-ALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 ++ ++ A+ N ++ +N D + NL++R+ V Q+ RL Sbjct: 476 NNENTVAGLGNIPALEHQYQANAEFGSVRGTNNDTLN---NLRNRMR--VPPQN--RLEQ 528 Query: 534 MIEINEERFAKILRKW 549 MI ++EERFA +LR+W Sbjct: 529 MIAMDEERFAGVLREW 544 >gi|254504967|ref|ZP_05117118.1| flagellar M-ring protein FliF [Labrenzia alexandrii DFL-11] gi|222441038|gb|EEE47717.1| flagellar M-ring protein FliF [Labrenzia alexandrii DFL-11] Length = 548 Score = 360 bits (924), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 219/544 (40%), Positives = 322/544 (59%), Gaps = 30/544 (5%) Query: 17 LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76 LG R++ LA + L I A F+++ P LY L DV+RI AL +A I F + Sbjct: 17 LGMRRLIALALIGLATIATVGAGAFYLSRPETTPLYTGLTGEDVSRIGSALRDAGIPFDV 76 Query: 77 SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136 S G ++ V KAR+ LA +GLP + NSGYELFD + S GLTSFMQE+TRVRALE Sbjct: 77 SSEGDAVMVSHGQTAKARMLLAEKGLPRGA-NSGYELFDDLGSLGLTSFMQEVTRVRALE 135 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVA 196 GE+ARTIQ + GI AARVHIV+P+ GSFR+ P+ASV+IR+ P ++A+AIRHLVA Sbjct: 136 GELARTIQLMKGIRAARVHIVLPEKGSFRRDQQPPSASVVIRSDIPDDVRTADAIRHLVA 195 Query: 197 AAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255 A VP ++ VTVLD+TG +L A + + G+ ++ A+ + I+ N+ K L +LG+ Sbjct: 196 AGVPGMEAAKVTVLDTTGGILAAGKDPTKASAGQMATLETAVSNRIQENVRKTLTPYLGL 255 Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV 315 DNF+ +V A+LN D + I E ++DPDS++ERS+R ++ + +E S + VT EQN+P Sbjct: 256 DNFQVSVAAKLNTDRKMIAETIFDPDSRIERSVRTIRENENAENSSAATPVTAEQNLPDE 315 Query: 316 SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS 375 + RSLE T+++EE NYEI++K I T+ D Y+++RLSIAV+V++ RL LG S Sbjct: 316 NVEADGGERSLEETERREETVNYEISSKRIETSQDGYRVDRLSIAVLVDRTRLAASLGGS 375 Query: 376 ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435 Q +I+ + EI +V+++ G+ RGD + I+ +DF++ + + L R Sbjct: 376 PTQSQIEEQVREIEALVASSAGVTEERGDLVKISVVDFVDGGRDLEPIPPIGVTEYLLRQ 435 Query: 436 FATVINALVFLVGTLLVTFLGLH----ALRRLHNIDDAKKGEVGGKSILSPPPISSAV-- 489 +INAL L ++LV + GL AL + + A+ E+G L P + A Sbjct: 436 SGNIINALAILTVSMLVIWFGLRPAVAALVPQVSSEQAEMAEIG----LLPEGLEDAADA 491 Query: 490 ----TTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545 T LMP D HS +L +NS +K + +L ++E NEE+ A I Sbjct: 492 MDGETGFLMPPD-------------HS-DLLHDLNSKRNKSALKKLESLLEFNEEQSAAI 537 Query: 546 LRKW 549 LR+W Sbjct: 538 LRQW 541 >gi|256059797|ref|ZP_05449992.1| flagellar MS-ring protein [Brucella neotomae 5K33] gi|261323777|ref|ZP_05962974.1| flagellar M-ring protein FliF [Brucella neotomae 5K33] gi|261299757|gb|EEY03254.1| flagellar M-ring protein FliF [Brucella neotomae 5K33] Length = 580 Score = 356 bits (913), Expect = 7e-96, Method: Compositional matrix adjust. Identities = 222/558 (39%), Positives = 333/558 (59%), Gaps = 23/558 (4%) Query: 4 LDQLLQFFKSGT--SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 QL++ K GT LG ++++L V + + ++ P Y+ LYV L DVN Sbjct: 10 FQQLIEQLK-GTLGKLGARKLIVLGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 68 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 R+ +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S G Sbjct: 69 RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 127 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 128 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 187 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHE 240 +SA++IR LVAAAVP+LD VTVLD+ G LL +A E + S+ Q + Sbjct: 188 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 247 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 ++ +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S + Sbjct: 248 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 307 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 + ++A VEQN+P + S E TD++EE +NYE+N+K+++T D Y ++RLSIA Sbjct: 308 RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIA 367 Query: 361 VVVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 VV+++ RL + G + +D + +I +V+ A G+N+ RGD I +T+++FL+ Sbjct: 368 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGA 427 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA-------KKG 472 + V + D L R + NAL L L+ + GL L R N+ A + G Sbjct: 428 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 487 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS-RNLQSRINSYVSKQSDLRL 531 EV +P I A + G I ++ D S +L+ R+ + LRL Sbjct: 488 EVA-----TPNFIGGAESVGEGVQAVIGGPAAYADQMKTSLSDLRQRMR----MPAKLRL 538 Query: 532 LHMIEINEERFAKILRKW 549 MIE++EER A +L++W Sbjct: 539 EQMIEMDEERVAAVLKQW 556 >gi|161621189|ref|YP_001595075.1| flagellar MS-ring protein [Brucella canis ATCC 23365] gi|161338000|gb|ABX64304.1| flagellar M-ring protein FliF [Brucella canis ATCC 23365] Length = 580 Score = 356 bits (913), Expect = 7e-96, Method: Compositional matrix adjust. Identities = 225/560 (40%), Positives = 337/560 (60%), Gaps = 27/560 (4%) Query: 4 LDQLLQFFKSGT--SLGRTRILILASV--ILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 QL++ K GT LG +++ L V L+ +L+M+ ++ P Y+ LYV L D Sbjct: 10 FQQLIEQLK-GTLGKLGARKLIALGLVGAALMSAILYMS--IYLGRPSYETLYVGLSRDD 66 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 VNR+ +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S Sbjct: 67 VNRMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGS 125 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 GLTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 126 LGLTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRA 185 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQ 238 +SA++IR LVAAAVP+LD VTVLD+ G LL +A E + S+ Q + Sbjct: 186 EGGFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVA 245 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 ++ +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S Sbjct: 246 SHVDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSR 305 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 ++ ++A VEQN+P + S E TD++EE +NYE+N+K+++T D Y ++RLS Sbjct: 306 NNRNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLS 365 Query: 359 IAVVVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 IAVV+++ RL + G + +D + +I +V+ A G+N+ RGD I +T+++FL+ Sbjct: 366 IAVVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPA 425 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA-------K 470 + V + D L R + NAL L L+ + GL L R N+ A + Sbjct: 426 GADMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIRE 485 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS-RNLQSRINSYVSKQSDL 529 GEV +P I A + G I ++ D S +L+ R+ + L Sbjct: 486 AGEVA-----TPNFIGGAESVGEGVQAVIGGPAAYADQMKTSLSDLRQRMR----MPAKL 536 Query: 530 RLLHMIEINEERFAKILRKW 549 RL MIE++EER A +L++W Sbjct: 537 RLEQMIEMDEERVAAVLKQW 556 >gi|260568707|ref|ZP_05839176.1| flagellar M-ring protein FliF [Brucella suis bv. 4 str. 40] gi|260155372|gb|EEW90453.1| flagellar M-ring protein FliF [Brucella suis bv. 4 str. 40] Length = 580 Score = 355 bits (912), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 225/560 (40%), Positives = 337/560 (60%), Gaps = 27/560 (4%) Query: 4 LDQLLQFFKSGT--SLGRTRILILASV--ILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 QL++ K GT LG +++ L V L+ +L+M+ ++ P Y+ LYV L D Sbjct: 10 FQQLIEQLK-GTLGKLGARKLIALGLVGAALMGAILYMS--IYLGRPSYETLYVGLSRDD 66 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 VNR+ +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S Sbjct: 67 VNRMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGS 125 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 GLTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 126 LGLTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRA 185 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQ 238 +SA++IR LVAAAVP+LD VTVLD+ G LL +A E + S+ Q + Sbjct: 186 EGGFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVA 245 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 ++ +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S Sbjct: 246 SHVDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSR 305 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 ++ ++A VEQN+P + S E TD++EE +NYE+N+K+++T D Y ++RLS Sbjct: 306 NNRNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLS 365 Query: 359 IAVVVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 IAVV+++ RL + G + +D + +I +V+ A G+N+ RGD I +T+++FL+ Sbjct: 366 IAVVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPA 425 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA-------K 470 + V + D L R + NAL L L+ + GL L R N+ A + Sbjct: 426 GADMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIRE 485 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS-RNLQSRINSYVSKQSDL 529 GEV +P I A + G I ++ D S +L+ R+ + L Sbjct: 486 AGEVA-----TPNFIGGAESVGEGVQAVIGGPAAYADQMKTSLSDLRQRMR----MPAKL 536 Query: 530 RLLHMIEINEERFAKILRKW 549 RL MIE++EER A +L++W Sbjct: 537 RLEQMIEMDEERVAAVLKQW 556 >gi|189023215|ref|YP_001932956.1| flagellar MS-ring protein [Brucella abortus S19] gi|254691603|ref|ZP_05154857.1| flagellar MS-ring protein [Brucella abortus bv. 6 str. 870] gi|254698196|ref|ZP_05160024.1| flagellar MS-ring protein [Brucella abortus bv. 2 str. 86/8/59] gi|254699268|ref|ZP_05161096.1| flagellar MS-ring protein [Brucella suis bv. 5 str. 513] gi|254702392|ref|ZP_05164220.1| flagellar MS-ring protein [Brucella suis bv. 3 str. 686] gi|254711225|ref|ZP_05173036.1| flagellar MS-ring protein [Brucella pinnipedialis B2/94] gi|254731641|ref|ZP_05190219.1| flagellar MS-ring protein [Brucella abortus bv. 4 str. 292] gi|256030146|ref|ZP_05443760.1| flagellar MS-ring protein [Brucella pinnipedialis M292/94/1] gi|256256791|ref|ZP_05462327.1| flagellar MS-ring protein [Brucella abortus bv. 9 str. C68] gi|189021789|gb|ACD74510.1| flagellar M-ring protein FliF [Brucella abortus S19] Length = 575 Score = 354 bits (909), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 222/558 (39%), Positives = 332/558 (59%), Gaps = 23/558 (4%) Query: 4 LDQLLQFFKSGT--SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 QL++ K GT LG +++ L V + + ++ P Y+ LYV L DVN Sbjct: 5 FQQLIEQLK-GTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 R+ +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S G Sbjct: 64 RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 122 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 123 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 182 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHE 240 +SA++IR LVAAAVP+LD VTVLD+ G LL +A E + S+ Q + Sbjct: 183 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 242 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 ++ +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S + Sbjct: 243 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 302 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 + ++A VEQN+P + S E TD++EE +NYE+N+K+++T D Y ++RLSIA Sbjct: 303 RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIA 362 Query: 361 VVVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 VV+++ RL + G + +D + +I +V+ A G+N+ RGD I +T+++FL+ Sbjct: 363 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGA 422 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA-------KKG 472 + V + D L R + NAL L L+ + GL L R N+ A + G Sbjct: 423 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 482 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS-RNLQSRINSYVSKQSDLRL 531 EV +P I A + G I ++ D S +L+ R+ + LRL Sbjct: 483 EVA-----TPNFIGGAESVGEGVQAVIGGPAAYADQMKTSLSDLRQRMR----MPAKLRL 533 Query: 532 LHMIEINEERFAKILRKW 549 MIE++EER A +L++W Sbjct: 534 EQMIEMDEERVAAVLKQW 551 >gi|23500860|ref|NP_700300.1| flagellar MS-ring protein [Brucella suis 1330] gi|83269941|ref|YP_419232.1| flagellar MS-ring protein [Brucella melitensis biovar Abortus 2308] gi|225628435|ref|ZP_03786469.1| flagellar M-ring protein FliF [Brucella ceti str. Cudo] gi|237817511|ref|ZP_04596501.1| flagellar M-ring protein FliF [Brucella abortus str. 2308 A] gi|256015905|ref|YP_003105914.1| flagellar M-ring protein FliF [Brucella microti CCM 4915] gi|260166802|ref|ZP_05753613.1| flagellar MS-ring protein [Brucella sp. F5/99] gi|260544149|ref|ZP_05819970.1| flagellar M-ring protein FliF [Brucella abortus NCTC 8038] gi|260757235|ref|ZP_05869583.1| flagellar M-ring protein FliF [Brucella abortus bv. 6 str. 870] gi|260759400|ref|ZP_05871748.1| flagellar M-ring protein FliF [Brucella abortus bv. 4 str. 292] gi|260762643|ref|ZP_05874975.1| flagellar M-ring protein FliF [Brucella abortus bv. 2 str. 86/8/59] gi|260883039|ref|ZP_05894653.1| flagellar M-ring protein FliF [Brucella abortus bv. 9 str. C68] gi|261318817|ref|ZP_05958014.1| flagellar M-ring protein FliF [Brucella pinnipedialis B2/94] gi|261749710|ref|ZP_05993419.1| flagellar M-ring protein [Brucella suis bv. 5 str. 513] gi|261752953|ref|ZP_05996662.1| flagellar M-ring protein FliF [Brucella suis bv. 3 str. 686] gi|261756180|ref|ZP_05999889.1| flagellar M-ring protein FliF [Brucella sp. F5/99] gi|265987176|ref|ZP_06099733.1| flagellar M-ring protein FliF [Brucella pinnipedialis M292/94/1] gi|294852976|ref|ZP_06793648.1| flagellar M-ring protein FliF [Brucella sp. NVSL 07-0026] gi|297250144|ref|ZP_06933845.1| flagellar M-ring protein FliF [Brucella abortus bv. 5 str. B3196] gi|38257618|sp|Q8FUS3|FLIF_BRUSU RecName: Full=Flagellar M-ring protein FliF gi|23464525|gb|AAN34305.1| flagellar M-ring protein FliF [Brucella suis 1330] gi|82940215|emb|CAJ13271.1| Flagellar FliF M-ring protein:Type III secretion system outer membrane K protein:Secretory protein YscJ/FliF [Brucella melitensis biovar Abortus 2308] gi|225616281|gb|EEH13329.1| flagellar M-ring protein FliF [Brucella ceti str. Cudo] gi|237787266|gb|EEP61484.1| flagellar M-ring protein FliF [Brucella abortus str. 2308 A] gi|255998565|gb|ACU50252.1| flagellar M-ring protein FliF [Brucella microti CCM 4915] gi|260097420|gb|EEW81294.1| flagellar M-ring protein FliF [Brucella abortus NCTC 8038] gi|260669718|gb|EEX56658.1| flagellar M-ring protein FliF [Brucella abortus bv. 4 str. 292] gi|260673064|gb|EEX59885.1| flagellar M-ring protein FliF [Brucella abortus bv. 2 str. 86/8/59] gi|260677343|gb|EEX64164.1| flagellar M-ring protein FliF [Brucella abortus bv. 6 str. 870] gi|260872567|gb|EEX79636.1| flagellar M-ring protein FliF [Brucella abortus bv. 9 str. C68] gi|261298040|gb|EEY01537.1| flagellar M-ring protein FliF [Brucella pinnipedialis B2/94] gi|261736164|gb|EEY24160.1| flagellar M-ring protein FliF [Brucella sp. F5/99] gi|261739463|gb|EEY27389.1| flagellar M-ring protein [Brucella suis bv. 5 str. 513] gi|261742706|gb|EEY30632.1| flagellar M-ring protein FliF [Brucella suis bv. 3 str. 686] gi|264659373|gb|EEZ29634.1| flagellar M-ring protein FliF [Brucella pinnipedialis M292/94/1] gi|294818631|gb|EFG35631.1| flagellar M-ring protein FliF [Brucella sp. NVSL 07-0026] gi|297174013|gb|EFH33377.1| flagellar M-ring protein FliF [Brucella abortus bv. 5 str. B3196] Length = 580 Score = 354 bits (909), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 222/558 (39%), Positives = 332/558 (59%), Gaps = 23/558 (4%) Query: 4 LDQLLQFFKSGT--SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 QL++ K GT LG +++ L V + + ++ P Y+ LYV L DVN Sbjct: 10 FQQLIEQLK-GTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 68 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 R+ +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S G Sbjct: 69 RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 127 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 128 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 187 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHE 240 +SA++IR LVAAAVP+LD VTVLD+ G LL +A E + S+ Q + Sbjct: 188 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 247 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 ++ +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S + Sbjct: 248 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 307 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 + ++A VEQN+P + S E TD++EE +NYE+N+K+++T D Y ++RLSIA Sbjct: 308 RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIA 367 Query: 361 VVVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 VV+++ RL + G + +D + +I +V+ A G+N+ RGD I +T+++FL+ Sbjct: 368 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGA 427 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA-------KKG 472 + V + D L R + NAL L L+ + GL L R N+ A + G Sbjct: 428 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 487 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS-RNLQSRINSYVSKQSDLRL 531 EV +P I A + G I ++ D S +L+ R+ + LRL Sbjct: 488 EVA-----TPNFIGGAESVGEGVQAVIGGPAAYADQMKTSLSDLRQRMR----MPAKLRL 538 Query: 532 LHMIEINEERFAKILRKW 549 MIE++EER A +L++W Sbjct: 539 EQMIEMDEERVAAVLKQW 556 >gi|306841269|ref|ZP_07473980.1| flagellar M-ring protein FliF [Brucella sp. BO2] gi|306288671|gb|EFM60002.1| flagellar M-ring protein FliF [Brucella sp. BO2] Length = 542 Score = 353 bits (907), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 214/519 (41%), Positives = 317/519 (61%), Gaps = 20/519 (3%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++ P Y+ LYV L DVNR+ +AL EA I F + +GSSI VP AR++LA + Sbjct: 10 IYLGRPSYETLYVGLSRDDVNRMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEK 69 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP+S+ N+GYELFD + S GLTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + Sbjct: 70 GLPTSN-NAGYELFDNMGSLGLTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAE 128 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TA 219 GSFR+ +P+ASV+IRA +SA++IR LVAAAVP+LD VTVLD+ G LL +A Sbjct: 129 KGSFRRGDQKPSASVVIRAEGGFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASA 188 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 E + S+ Q + ++ +I KALA +LG+ +F+++V A L+ D +Q +E YD Sbjct: 189 GEGANGAALMTASLEQQVASHVDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYD 248 Query: 280 PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYE 339 P+S+VERS+R+ +++ S ++ ++A VEQN+P + S E TD++EE +NYE Sbjct: 249 PESRVERSVRVVRESGDSRNNRNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYE 308 Query: 340 INTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGI 398 +N+K+++T D Y ++RLSIAVV+++ RL + G + +D + +I +V+ A G+ Sbjct: 309 VNSKTVSTVSDGYSIKRLSIAVVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGL 368 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 N+ RGD I +T+++FL+ + V + D L R + NAL L L+ + GL Sbjct: 369 NANRGDVINVTAVNFLDPAGADMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLR 428 Query: 459 ALRRLHNIDDA-------KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSH 511 L R N+ A + GEV +P I SA + G I ++ D Sbjct: 429 PLLRDQNVKPAGTEVAIREAGEVA-----TPNFIGSAESVGEGAQAVIGGPAAYADQMKT 483 Query: 512 S-RNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549 S +L+ R+ + LRL MIE++EER A +L++W Sbjct: 484 SLSDLRQRMR----MPAKLRLEQMIEMDEERVAAVLKQW 518 >gi|261215451|ref|ZP_05929732.1| flagellar M-ring protein FliF [Brucella abortus bv. 3 str. Tulya] gi|260917058|gb|EEX83919.1| flagellar M-ring protein FliF [Brucella abortus bv. 3 str. Tulya] Length = 580 Score = 353 bits (906), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 222/558 (39%), Positives = 332/558 (59%), Gaps = 23/558 (4%) Query: 4 LDQLLQFFKSGT--SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 QL++ K GT LG +++ L V + + ++ P Y+ LYV L DVN Sbjct: 10 FQQLIEQLK-GTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 68 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 R+ +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S G Sbjct: 69 RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 127 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 128 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 187 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHE 240 +SA++IR LVAAAVP+LD VTVLD+ G LL +A E + S+ Q + Sbjct: 188 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 247 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 ++ +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S + Sbjct: 248 VDDSIRKALAPYLGLGHFQTSVQAVLDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 307 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 + ++A VEQN+P + S E TD++EE +NYE+N+K+++T D Y ++RLSIA Sbjct: 308 RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIA 367 Query: 361 VVVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 VV+++ RL + G + +D + +I +V+ A G+N+ RGD I +T+++FL+ Sbjct: 368 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGA 427 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA-------KKG 472 + V + D L R + NAL L L+ + GL L R N+ A + G Sbjct: 428 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 487 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS-RNLQSRINSYVSKQSDLRL 531 EV +P I A + G I ++ D S +L+ R+ + LRL Sbjct: 488 EVA-----TPNFIGGAESVGEGVQAVIGGPAAYADQMKTSLSDLRQRMR----MPAKLRL 538 Query: 532 LHMIEINEERFAKILRKW 549 MIE++EER A +L++W Sbjct: 539 EQMIEMDEERVAAVLKQW 556 >gi|254695100|ref|ZP_05156928.1| flagellar MS-ring protein [Brucella abortus bv. 3 str. Tulya] Length = 575 Score = 353 bits (906), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 222/558 (39%), Positives = 332/558 (59%), Gaps = 23/558 (4%) Query: 4 LDQLLQFFKSGT--SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 QL++ K GT LG +++ L V + + ++ P Y+ LYV L DVN Sbjct: 5 FQQLIEQLK-GTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 R+ +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S G Sbjct: 64 RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 122 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 123 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 182 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHE 240 +SA++IR LVAAAVP+LD VTVLD+ G LL +A E + S+ Q + Sbjct: 183 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 242 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 ++ +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S + Sbjct: 243 VDDSIRKALAPYLGLGHFQTSVQAVLDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 302 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 + ++A VEQN+P + S E TD++EE +NYE+N+K+++T D Y ++RLSIA Sbjct: 303 RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIA 362 Query: 361 VVVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 VV+++ RL + G + +D + +I +V+ A G+N+ RGD I +T+++FL+ Sbjct: 363 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGA 422 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA-------KKG 472 + V + D L R + NAL L L+ + GL L R N+ A + G Sbjct: 423 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 482 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS-RNLQSRINSYVSKQSDLRL 531 EV +P I A + G I ++ D S +L+ R+ + LRL Sbjct: 483 EVA-----TPNFIGGAESVGEGVQAVIGGPAAYADQMKTSLSDLRQRMR----MPAKLRL 533 Query: 532 LHMIEINEERFAKILRKW 549 MIE++EER A +L++W Sbjct: 534 EQMIEMDEERVAAVLKQW 551 >gi|256158325|ref|ZP_05456229.1| flagellar MS-ring protein [Brucella ceti M490/95/1] gi|256252741|ref|ZP_05458277.1| flagellar MS-ring protein [Brucella ceti B1/94] Length = 575 Score = 353 bits (906), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 222/558 (39%), Positives = 331/558 (59%), Gaps = 23/558 (4%) Query: 4 LDQLLQFFKSGT--SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 QL++ K GT LG +++ L V + + ++ P Y+ LYV L DVN Sbjct: 5 FQQLIEQLK-GTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 R+ AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S G Sbjct: 64 RMGRALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 122 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 123 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 182 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHE 240 +SA++IR LVAAAVP+LD VTVLD+ G LL +A E + S+ Q + Sbjct: 183 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 242 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 ++ +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S + Sbjct: 243 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 302 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 + ++A VEQN+P + S E TD++EE +NYE+N+K+++T D Y ++RLSIA Sbjct: 303 RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIA 362 Query: 361 VVVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 VV+++ RL + G + +D + +I +V+ A G+N+ RGD I +T+++FL+ Sbjct: 363 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGA 422 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA-------KKG 472 + V + D L R + NAL L L+ + GL L R N+ A + G Sbjct: 423 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 482 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS-RNLQSRINSYVSKQSDLRL 531 EV +P I A + G I ++ D S +L+ R+ + LRL Sbjct: 483 EVA-----TPNFIGGAESVGEGVQAVIGGPAAYADQMKTSLSDLRQRMR----MPAKLRL 533 Query: 532 LHMIEINEERFAKILRKW 549 MIE++EER A +L++W Sbjct: 534 EQMIEMDEERVAAVLKQW 551 >gi|261219820|ref|ZP_05934101.1| flagellar M-ring protein FliF [Brucella ceti B1/94] gi|265996839|ref|ZP_06109396.1| flagellar M-ring protein FliF [Brucella ceti M490/95/1] gi|260918404|gb|EEX85057.1| flagellar M-ring protein FliF [Brucella ceti B1/94] gi|262551136|gb|EEZ07297.1| flagellar M-ring protein FliF [Brucella ceti M490/95/1] Length = 580 Score = 353 bits (905), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 222/558 (39%), Positives = 331/558 (59%), Gaps = 23/558 (4%) Query: 4 LDQLLQFFKSGT--SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 QL++ K GT LG +++ L V + + ++ P Y+ LYV L DVN Sbjct: 10 FQQLIEQLK-GTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 68 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 R+ AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S G Sbjct: 69 RMGRALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 127 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 128 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 187 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHE 240 +SA++IR LVAAAVP+LD VTVLD+ G LL +A E + S+ Q + Sbjct: 188 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 247 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 ++ +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S + Sbjct: 248 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 307 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 + ++A VEQN+P + S E TD++EE +NYE+N+K+++T D Y ++RLSIA Sbjct: 308 RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIA 367 Query: 361 VVVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 VV+++ RL + G + +D + +I +V+ A G+N+ RGD I +T+++FL+ Sbjct: 368 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGA 427 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA-------KKG 472 + V + D L R + NAL L L+ + GL L R N+ A + G Sbjct: 428 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 487 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS-RNLQSRINSYVSKQSDLRL 531 EV +P I A + G I ++ D S +L+ R+ + LRL Sbjct: 488 EVA-----TPNFIGGAESVGEGVQAVIGGPAAYADQMKTSLSDLRQRMR----MPAKLRL 538 Query: 532 LHMIEINEERFAKILRKW 549 MIE++EER A +L++W Sbjct: 539 EQMIEMDEERVAAVLKQW 556 >gi|148558201|ref|YP_001258009.1| flagellar MS-ring protein [Brucella ovis ATCC 25840] gi|148369486|gb|ABQ62358.1| flagellar M-ring protein FliF [Brucella ovis ATCC 25840] Length = 568 Score = 353 bits (905), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 217/543 (39%), Positives = 325/543 (59%), Gaps = 20/543 (3%) Query: 17 LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76 LG +++ L V + + ++ P Y+ LYV L DVNR+ +AL EA I F + Sbjct: 12 LGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVNRMGLALGEAGIPFDV 71 Query: 77 SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136 +GSSI VP AR++LA +GLP+S+ N+GYELFD + S GLTSFMQEITRVRALE Sbjct: 72 KSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGLTSFMQEITRVRALE 130 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVA 196 GEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA +SA++IR LVA Sbjct: 131 GEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGGFSAESAQSIRQLVA 190 Query: 197 AAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255 AAVP+LD VTVLD+ G LL +A E + S+ Q + ++ +I KALA +LG+ Sbjct: 191 AAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASHVDDSIRKALAPYLGL 250 Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV 315 +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S ++ ++A VEQN+P Sbjct: 251 GHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNNRNDNATGVEQNIPQE 310 Query: 316 SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS 375 + S E TD++EE +NYE+N+K+++T D Y ++RLSIAVV+++ RL + G + Sbjct: 311 QIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIAVVIDQARLLQTAGTT 370 Query: 376 ADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSR 434 +D + +I +V+ A G+N+ RGD I +T+++FL+ + V + D L R Sbjct: 371 PPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGADMEPVSAPWTDTLLR 430 Query: 435 HFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA-------KKGEVGGKSILSPPPISS 487 + NAL L L+ + GL L R N+ A + GEV +P I Sbjct: 431 QSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAGEVA-----TPNFIGG 485 Query: 488 AVTTGLMPNDNIALDSSNQDIFSHS-RNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546 A + G I ++ D S +L+ R+ + LRL MIE++EER A +L Sbjct: 486 AESVGEGVQAVIGGPAAYADQMKTSLSDLRQRMR----MPAKLRLEQMIEMDEERVAAVL 541 Query: 547 RKW 549 ++W Sbjct: 542 KQW 544 >gi|122065185|sp|Q8YDM4|FLIF_BRUME RecName: Full=Flagellar M-ring protein Length = 580 Score = 352 bits (904), Expect = 8e-95, Method: Compositional matrix adjust. Identities = 221/558 (39%), Positives = 332/558 (59%), Gaps = 23/558 (4%) Query: 4 LDQLLQFFKSGT--SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 QL++ K GT LG +++ L V + + ++ P Y+ LYV L DVN Sbjct: 10 FQQLIEQLK-GTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 68 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 R+ +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S G Sbjct: 69 RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 127 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 128 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 187 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHE 240 +SA++IR LVAAAVP+LD VTVLD+ G LL +A E + S+ Q + Sbjct: 188 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 247 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 ++ +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S + Sbjct: 248 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 307 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 + ++A VEQN+P + S E TD++EE +NYE+N+ +++T D Y ++RLSIA Sbjct: 308 RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSMTVSTVSDGYSIKRLSIA 367 Query: 361 VVVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 VV+++ RL + G + +D + +I +V+ A G+N+ RGD I +T+++FL++ Sbjct: 368 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDSAGA 427 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA-------KKG 472 + V + D L R + NAL L L+ + GL L R N+ A + G Sbjct: 428 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 487 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS-RNLQSRINSYVSKQSDLRL 531 EV +P I A + G I ++ D S +L+ R+ + LRL Sbjct: 488 EVA-----TPNFIGGAESVGEGVQAVIGGPAAYADQMKTSLSDLRQRMR----MPAKLRL 538 Query: 532 LHMIEINEERFAKILRKW 549 MIE++EER A +L++W Sbjct: 539 EQMIEMDEERVAAVLKQW 556 >gi|62317964|ref|YP_223817.1| flagellar MS-ring protein [Brucella abortus bv. 1 str. 9-941] gi|68067522|sp|O52069|FLIF_BRUAB RecName: Full=Flagellar M-ring protein gi|62198157|gb|AAX76456.1| FliF, flagellar M-ring protein [Brucella abortus bv. 1 str. 9-941] Length = 580 Score = 352 bits (903), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 221/558 (39%), Positives = 331/558 (59%), Gaps = 23/558 (4%) Query: 4 LDQLLQFFKSGT--SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 QL++ K GT LG +++ L V + + ++ P Y+ LYV L DVN Sbjct: 10 FQQLIEQLK-GTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 68 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 R+ +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S G Sbjct: 69 RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 127 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 128 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 187 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHE 240 +SA++IR LVAAAVP+LD VTVLD+ G LL +A E + S+ Q + Sbjct: 188 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 247 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 ++ +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S + Sbjct: 248 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 307 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 + ++A VEQN+P + S E D++EE +NYE+N+K+++T D Y ++RLSIA Sbjct: 308 RNDNATGVEQNIPQEQIQNRNGESSTEKMDRREELTNYEVNSKTVSTVSDGYSIKRLSIA 367 Query: 361 VVVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 VV+++ RL + G + +D + +I +V+ A G+N+ RGD I +T+++FL+ Sbjct: 368 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGA 427 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA-------KKG 472 + V + D L R + NAL L L+ + GL L R N+ A + G Sbjct: 428 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 487 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS-RNLQSRINSYVSKQSDLRL 531 EV +P I A + G I ++ D S +L+ R+ + LRL Sbjct: 488 EVA-----TPNFIGGAESVGEGVQAVIGGPAAYADQMKTSLSDLRQRMR----MPAKLRL 538 Query: 532 LHMIEINEERFAKILRKW 549 MIE++EER A +L++W Sbjct: 539 EQMIEMDEERVAAVLKQW 556 >gi|118589973|ref|ZP_01547377.1| flagellar M-ring protein [Stappia aggregata IAM 12614] gi|118437470|gb|EAV44107.1| flagellar M-ring protein [Stappia aggregata IAM 12614] Length = 548 Score = 352 bits (902), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 218/544 (40%), Positives = 316/544 (58%), Gaps = 30/544 (5%) Query: 17 LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76 LG R++ LA + L I A ++++ P LY L+ DV RI AL +A I F I Sbjct: 17 LGVRRLVALALIGLATIATVGAGAYYLSRPEQTVLYTGLDGEDVTRIGSALRDAGIPFDI 76 Query: 77 SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136 + G+++ V + KAR+ LA +GLP + NSGYELFD++ S GLTSFMQE+TRVRALE Sbjct: 77 NSEGTAVMVSHAQTAKARMLLAEKGLPRGA-NSGYELFDELGSLGLTSFMQEVTRVRALE 135 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVA 196 GE+ARTIQ + GI AARVHIV+P+ GSFR+ P+ASV+IR+ P ++A+AIRHLVA Sbjct: 136 GELARTIQLMKGIRAARVHIVLPEKGSFRRDQQPPSASVVIRSDVPDDVRTADAIRHLVA 195 Query: 197 AAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255 A VP + VTVLD++G +L A + + G+ S+ A+ + I+ NI K L +LG+ Sbjct: 196 AGVPGMQADKVTVLDTSGGILAAGKDPTKASAGQLASLETAVSNRIQENIRKTLTPYLGL 255 Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV 315 DNF+ +V AELN D + I E ++DPDS+ ERSIR ++ + ++ S + TVEQN+P Sbjct: 256 DNFQVSVAAELNTDRKTIAETIFDPDSRTERSIRTIRENENAQNSSVSAPTTVEQNLPEE 315 Query: 316 SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS 375 RS E +++EE NYEI++K I T+ D Y+++RLSIAV+V+K RL + LG Sbjct: 316 DVSADNGERSSEENERREETVNYEISSKRIETSQDGYRVDRLSIAVLVDKSRLAQSLGGE 375 Query: 376 ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435 Q ++ L EI +V+++ GI RGD + + +DF++ +S + L R Sbjct: 376 PTQAQMQEQLTEIEALVASSAGIEKERGDLVKVAVVDFVDGGRAMEPIPPISITEYLMRQ 435 Query: 436 FATVINALVFLVGTLLVTFLGLH----ALRRLHNIDDAKKGEVGGKSILSPPPISSAV-- 489 +INAL L ++LV + GL AL + E+G ++P V Sbjct: 436 SGNIINALAILTVSMLVIWFGLRPAVAALVPQIAKPQVEMAELG----MTPETAEGTVEA 491 Query: 490 ----TTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545 T LMP D HS LQ +NS +K + +L ++E NEE+ A I Sbjct: 492 VDGEQTFLMPPD-------------HSDMLQD-LNSRRNKSALRKLESLLEFNEEQSAAI 537 Query: 546 LRKW 549 LR+W Sbjct: 538 LRQW 541 >gi|153011515|ref|YP_001372729.1| flagellar MS-ring protein [Ochrobactrum anthropi ATCC 49188] gi|151563403|gb|ABS16900.1| flagellar M-ring protein FliF [Ochrobactrum anthropi ATCC 49188] Length = 579 Score = 350 bits (897), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 223/572 (38%), Positives = 333/572 (58%), Gaps = 26/572 (4%) Query: 4 LDQLLQFFKSGT--SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 QL++ K GT LG +++ L V + + +++ P Y+ LYV L DVN Sbjct: 5 FQQLIEQLK-GTLGKLGARKLIALGLVGAALMGAILYTSIYLSRPSYETLYVGLSRDDVN 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 R+ +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S G Sbjct: 64 RMGLALGEAGIPFDVKADGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 122 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIVM + GSFR+ +P+ASV+IRA Sbjct: 123 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVMAEKGSFRRGDQKPSASVVIRAEG 182 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHE 240 +SA++IR LVAAAVP+LD VTVLD+ G+LL +A E + S+ Q + Sbjct: 183 GFAAESAQSIRQLVAAAVPSLDASAVTVLDTNGRLLASAGEAANGAALMTASLEQQVAGN 242 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 ++ +I KALA +LG+ +F+++V A L+ D +QI E YDP+S+VERS+R+ +++ S + Sbjct: 243 VDDSIRKALAPYLGIGHFQTSVQAVLDTDRRQINETTYDPESRVERSVRVVRESGDSRNN 302 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 + ++A VEQN+P + S E TD++EE +NYE+N+K+++T D Y ++RLSIA Sbjct: 303 RNDNATGVEQNIPQEEIQNRNGESSTEKTDRREELTNYEMNSKTVSTVSDGYTVKRLSIA 362 Query: 361 VVVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 VV+++ RL E G + +D + +I +V+ A G+N+ RGD I +T+++FL+ Sbjct: 363 VVIDQARLLETAGTTPPPANFVDQQITKIRDLVATAAGLNADRGDVINVTAVNFLDPAGA 422 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + V + D + R + +NAL L L+ + GL L R N EV + Sbjct: 423 DMEPVSTPWTDTVLRQSGSYVNALAILAAVGLLIWFGLRPLLRDQNAKPTGT-EVAVRE- 480 Query: 480 LSPPPISSAVTTGLMPN--DNIALDSSNQDIFSHSRNLQSRINSYVSK-------QSDLR 530 +S V MPN A Q + ++ + +S + LR Sbjct: 481 ------TSEVA---MPNFVGGQAAGEGVQAVIGGPEAYADQMKTSLSDLRQRMRMPAKLR 531 Query: 531 LLHMIEINEERFAKILRKWARSEIEDRYTQHI 562 L MI+++EER A IL++W R Q + Sbjct: 532 LEQMIDMDEERVASILKQWIHETAASREAQPL 563 >gi|306845426|ref|ZP_07478000.1| flagellar M-ring protein FliF [Brucella sp. BO1] gi|306274169|gb|EFM55985.1| flagellar M-ring protein FliF [Brucella sp. BO1] Length = 575 Score = 350 bits (897), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 221/558 (39%), Positives = 331/558 (59%), Gaps = 23/558 (4%) Query: 4 LDQLLQFFKSGT--SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 QL++ K GT LG +++ L V + + ++ P Y+ LYV L DVN Sbjct: 5 FQQLIEQLK-GTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 R+ +AL EA+I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S G Sbjct: 64 RMGLALGEADIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 122 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 LTSFMQEIT VRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 123 LTSFMQEITHVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 182 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHE 240 +SA++IR LVAAAVP+LD VTVLD+ G LL +A E + S+ Q + Sbjct: 183 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALITASLEQQVASH 242 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 ++ +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S + Sbjct: 243 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 302 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 + ++A VEQN+P + S E TD++EE +NYE+N+K+++T D Y ++RLSIA Sbjct: 303 RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIA 362 Query: 361 VVVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 VV+++ RL + G + +D + +I +V+ A G+N+ RGD I +T+++FL+ Sbjct: 363 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNANRGDVINVTAVNFLDPAGA 422 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA-------KKG 472 + V + D L R + NAL L L+ + GL L R N+ A + G Sbjct: 423 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 482 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS-RNLQSRINSYVSKQSDLRL 531 EV P I A + G I ++ D S +L+ R+ + LRL Sbjct: 483 EVA-----MPNFIGGAESVGEGVQAVIGGPAAYADQMKTSLSDLRQRMR----MPAKLRL 533 Query: 532 LHMIEINEERFAKILRKW 549 MIE++EER A +L++W Sbjct: 534 EQMIEMDEERVAAVLKQW 551 >gi|239834433|ref|ZP_04682761.1| flagellar M-ring protein FliF [Ochrobactrum intermedium LMG 3301] gi|239822496|gb|EEQ94065.1| flagellar M-ring protein FliF [Ochrobactrum intermedium LMG 3301] Length = 590 Score = 347 bits (890), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 219/568 (38%), Positives = 336/568 (59%), Gaps = 12/568 (2%) Query: 4 LDQLLQFFKSGT--SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 QL++ K GT LG +++ L V + + +++ P Y+ LYV L DVN Sbjct: 10 FQQLIEQLK-GTLGKLGARKLVALGLVGAALMAAILYTSIYLSRPSYETLYVGLSRDDVN 68 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 R+ +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S G Sbjct: 69 RMGLALGEAGIPFDVKADGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 127 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 128 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 187 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHE 240 +SA++IR LVAAAVP+LD VTVLD+ G+LL +A E + S+ Q + Sbjct: 188 GFAAESAQSIRQLVAAAVPSLDASAVTVLDTNGRLLASAGEAANGAALMTASLEQQVAGN 247 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 ++ +I KALA +LG+ +F+++V A L+ D +Q E ++DP+S+VERS+R+ +++ S + Sbjct: 248 VDDSIRKALAPYLGMGHFQTSVQAVLDTDRRQTNETIFDPESRVERSVRVVRESGDSRNN 307 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 + ++A VEQN+P + S E TD++EE +NYE+N+K+++T D Y ++RLSIA Sbjct: 308 RNDNATGVEQNIPQEEIQNRNGESSSEKTDRREELTNYEMNSKTVSTVSDGYTVKRLSIA 367 Query: 361 VVVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 VV+++ RL E G + +D +A+I +V+ A G+N+ RGD I +T+++FL+ Sbjct: 368 VVIDQARLLETAGTTPPPANFVDQQIAKIRDLVATAAGLNADRGDVINVTAVNFLDPAGA 427 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK-- 477 + V + D + R + +NAL L L+ + GL L R N A EV + Sbjct: 428 DMEPVSTPWTDTVLRQSGSYVNALAILAAVGLLIWFGLRPLLRDQNARTAGT-EVAIRET 486 Query: 478 SILSPPPI--SSAVTTGLMPNDNI-ALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 S ++ P A G+ + A+ + + S + + + LRL M Sbjct: 487 SDVAAPDFVGGQAAGEGVQGAQGVQAVIGGPEAYADQMKTSLSDLRQRMRMPAKLRLEQM 546 Query: 535 IEINEERFAKILRKWARSEIEDRYTQHI 562 I+++EER A +L++W R Q + Sbjct: 547 IDMDEERVAAVLKQWIHETAASREGQPL 574 >gi|328545497|ref|YP_004305606.1| flagellar M-ring protein [polymorphum gilvum SL003B-26A1] gi|326415238|gb|ADZ72301.1| Flagellar M-ring protein [Polymorphum gilvum SL003B-26A1] Length = 546 Score = 346 bits (888), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 210/536 (39%), Positives = 320/536 (59%), Gaps = 16/536 (2%) Query: 17 LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76 LG R++ LA + + I ++++ P LY L+ DV+RI AL +A I + + Sbjct: 17 LGTRRLIALALIGVATIATVGLGAYYLSRPQQTTLYTGLQGEDVSRIGSALQDAGIPYDV 76 Query: 77 SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136 S +G+++ V +AR+ LA +GLP + ++GYELFD + S GLTSFMQE+TRVRALE Sbjct: 77 SSDGTAVLVNHGAAARARMLLAERGLPRGA-DAGYELFDDLGSLGLTSFMQEVTRVRALE 135 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVA 196 GE+ARTIQ + G+ AARVHIV+P+ GSFR+ P+ASV+IR+ P ++A+AIRHLV+ Sbjct: 136 GELARTIQLMQGVRAARVHIVLPEKGSFRRDQQPPSASVVIRSDVPDDLRTADAIRHLVS 195 Query: 197 AAVPNLDMGDVTVLDSTGKLLTANEMERNI-LGKSLSIVQAIQHEIEMNINKALAAFLGV 255 AAVP + VTVLD++G LL A + N G+ S+ A+ I+ NI K L +LG+ Sbjct: 196 AAVPGMSADKVTVLDTSGGLLAAGKDPANASAGQIASLEAAVSGRIQENIRKTLTPYLGL 255 Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV 315 DNF+ +V A+LN D ++I E +YDP+S+VERS+R + + S+ S E+ TV+QN+P Sbjct: 256 DNFQVSVAADLNTDRRRIAETIYDPESRVERSVRTLRQNEMSQNSSTETPTTVQQNLPDE 315 Query: 316 SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS 375 + RS E ++EE NYEI++K+I T+ D Y +ERLSIAV+V++ RL LG S Sbjct: 316 TVTAENGERSSEENQRREETVNYEISSKTIETSQDGYSVERLSIAVLVDRARLEASLGGS 375 Query: 376 ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435 D + + L EI ++V+++ G++SRRGD I ++ +DF+ +S ++L R Sbjct: 376 PDPDTVAAQLVEIEQLVASSAGVSSRRGDVIKVSVVDFVNGGRAMEPVPPMSVSELLIRQ 435 Query: 436 FATVINALVFLVGTLLVTFLGLH-ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLM 494 +INA L L+ + GL AL L A E+G ++++ GL Sbjct: 436 SGNLINAFAILTVAGLLIWFGLRPALAVLVPQKSAAPAEIGELAMMTE-------GEGLA 488 Query: 495 PNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH-MIEINEERFAKILRKW 549 + A + D HS LQ N QS L+ L +++++E++ A IL++W Sbjct: 489 GEFSEARQLAGPD---HSGMLQDLTNKL--NQSPLKKLESLLDLDEQQSAAILKQW 539 >gi|114705807|ref|ZP_01438710.1| flagellar M-ring protein [Fulvimarina pelagi HTCC2506] gi|114538653|gb|EAU41774.1| flagellar M-ring protein [Fulvimarina pelagi HTCC2506] Length = 551 Score = 345 bits (886), Expect = 9e-93, Method: Compositional matrix adjust. Identities = 203/522 (38%), Positives = 315/522 (60%), Gaps = 33/522 (6%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 +F++ + LY L+ DV RI AL+EA I F ++ G ++ P S G+AR+ LA + Sbjct: 43 YFLSRADMETLYSGLDRQDVTRIGAALTEAGIPFDVTAEGDAVQTPFSQTGEARMLLAEK 102 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S N+GYELFD + S GLTSFMQE+TRVRALEGEIARTIQ+++ I AARVH+V+ D Sbjct: 103 GLPRSE-NAGYELFDNIGSIGLTSFMQEVTRVRALEGEIARTIQTLANIRAARVHVVLAD 161 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN 220 GSFR+ +P+ASV+IR + SA AIR LVAAA+P + +VTVL+S G LL + Sbjct: 162 EGSFRRERRKPSASVVIRTDGSEDFGSASAIRSLVAAAIPGMTPQEVTVLNSDGTLLASG 221 Query: 221 EME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 E + K I + + +E +I + LA +LGV NF+++V A LN D QQI E ++D Sbjct: 222 EEGVSSAPSKLFGIEKIMSGSVEESIRRTLAPYLGVGNFQTSVTASLNTDRQQISERIFD 281 Query: 280 PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK---EEQS 336 P+S+VERS+R K+ +S+ + AV +EQ++ +D P ++D+K EE + Sbjct: 282 PESRVERSVRSMKEMDQSQNTTQNEAVGIEQDI-QAADEVEGAPGGESSSDEKERREELT 340 Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT 396 NYEIN K+I TT + Y++E+LSIAVV+N+ RL +G +A ID+ +AEI +V++A+ Sbjct: 341 NYEINEKTIQTTSEGYEVEKLSIAVVINRQRLAAAIGENATDTDIDARIAEIESLVASAS 400 Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQ----VSFMDILSRHFATVINALVFLVGTLLV 452 G + RGD + +T++DF++ +G+++ F ++ R T+INAL LV +LV Sbjct: 401 GYSEARGDQLKVTAVDFVD----AAGSLEPIPGPGFSEMFMRQSGTLINALTILVVAVLV 456 Query: 453 TFLGLH-ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTG----LMPNDNIALDSSNQD 507 + GL A+R L + A+ SI + + + +G L P + +D Sbjct: 457 IWFGLKPAIRALAAPEPAESEADNDNSIETLQRVGEGMESGSVGSLAPANGT--QGFVED 514 Query: 508 IFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549 + +R+ Q+R+ + +++I+E + A +L++W Sbjct: 515 LSGAARSPQARLEA------------LVDIDENQAANVLKQW 544 >gi|158422251|ref|YP_001523543.1| flagellar MS-ring protein [Azorhizobium caulinodans ORS 571] gi|158329140|dbj|BAF86625.1| flagellar M-ring protein [Azorhizobium caulinodans ORS 571] Length = 559 Score = 340 bits (872), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 210/561 (37%), Positives = 315/561 (56%), Gaps = 13/561 (2%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M +QL + + LG R++ L + + + +++ P + LY L DV Sbjct: 1 MNAREQLERLLSNLRQLGARRLVALGLIAFTVMAVIGLGAMYLSQPERETLYANLSRDDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 RI AL +A I F +S +G+++ V S +AR+ LA +GLP SSS SGYELF+ V SF Sbjct: 61 TRIGGALKDAGIPFDVSSDGATVLVAHSDTARARMLLAVKGLPQSSS-SGYELFNDVRSF 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+T+VRALEGEIARTIQ++ GI AARVHIV+PD GSFR+ TASV+IR Sbjct: 120 GLTSFMQEVTKVRALEGEIARTIQTMKGIKAARVHIVLPDRGSFRRDQQLATASVVIRTE 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIVQAIQH 239 N + +A+AIRHLVAAA+P + + +VTVL++ G +LT+ E + ++ Q + Sbjct: 180 NSADSSTAQAIRHLVAAAIPGMKLDNVTVLNTEGTILTSTEDGVTAAATRKSALQQQVNR 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 E E I + L FLG+ NF +V + LN D I E YDP SK ERS R+ K+ +++ Sbjct: 240 ETEEKIRRTLTPFLGLGNFEVSVSSRLNTDRSTINETTYDPASKAERSTRVVKEQGQTQN 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + TV+QN+P + EN ++EE +N+EI+T+ T D Y +E LSI Sbjct: 300 RSQQPNTTVQQNIPPPPGTPGTGTENNENNQRREELTNFEISTRQSQTVRDAYSVENLSI 359 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AV+VNK RLT + D +++ EI ++VS+A G + RGD + + ++ F + Sbjct: 360 AVLVNKERLTG----TKDGTPLETQTYEIEQLVSSAAGFDKERGDKLKVVAVPFADGGNN 415 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH-ALRRLHNIDDAKKGEVGGKS 478 +++ ++L R T++NA+ LV +L+ + GL ALR + + + E + Sbjct: 416 MEPIPPLTWSELLFRQAGTIVNAVTILVVAILLIWFGLRPALRAILARPEPDEAEAIEAA 475 Query: 479 ILSP----PPISSAVTTGLMPN--DNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 +L+ PP + +T PN D + + S NL + S V++ RL Sbjct: 476 MLAAPTELPPDTVLPSTAQNPNTLDGVTTLAGFTGGDSGPVNLIGDVTSKVNRSPQRRLE 535 Query: 533 HMIEINEERFAKILRKWARSE 553 MIE +EE+ A ILR+W E Sbjct: 536 QMIEYDEEQAAAILRQWLHQE 556 >gi|218512857|ref|ZP_03509697.1| flagellar MS-ring protein [Rhizobium etli 8C-3] Length = 316 Score = 337 bits (863), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 166/307 (54%), Positives = 232/307 (75%), Gaps = 3/307 (0%) Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL- 217 P++G+FRK +PTASVMIRA + +A +IRHLVA+AVP LD+ DVT+LDS G+LL Sbjct: 1 PEVGNFRKAEQKPTASVMIRASAATGRSAATSIRHLVASAVPGLDVDDVTILDSAGQLLA 60 Query: 218 TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 + +E + L +SL+IVQ +Q E+E NI+KALA FLG+DNFRS+V A+LN D QQI+E Sbjct: 61 SGDEASNSSLNRSLNIVQNVQQEVESNIDKALAPFLGMDNFRSSVTADLNTDAQQIQETT 120 Query: 278 YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRK--VPLPRSLENTDKKEEQ 335 YDP+SKVERS+R +K+AQ+S+ Q ++A TVEQN+P + P S + +DK+EEQ Sbjct: 121 YDPESKVERSVRSTKEAQQSQQKQSDNATTVEQNIPQAAPDAGGASGPESQDKSDKREEQ 180 Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395 +NYEIN+++ ATT ++YK+E+LSIAVVVNKGR+ +++G ADQ KID+YLAE+ KIV++A Sbjct: 181 TNYEINSRTTATTRNSYKVEKLSIAVVVNKGRIAKMVGEPADQAKIDAYLAEMQKIVASA 240 Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455 GI+++RGD +T+T+MDFLENQL T V MD+LSR+ A +IN+L F+ +V ++ Sbjct: 241 AGIDAKRGDVVTVTAMDFLENQLLEDATGGVRVMDMLSRNLAGIINSLAFVAVAFVVVWM 300 Query: 456 GLHALRR 462 GL L R Sbjct: 301 GLRPLVR 307 >gi|2832233|gb|AAC01568.1| M-ring [Brucella abortus] Length = 540 Score = 336 bits (862), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 198/470 (42%), Positives = 293/470 (62%), Gaps = 6/470 (1%) Query: 4 LDQLLQFFKSGT--SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 QL++ K GT LG +++ L V + + ++ P Y+ LYV L DVN Sbjct: 10 FQQLIEQLK-GTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 68 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 R+ +AL EA I F + GSSI VP AR++LA +GLP+S+ N+GYELFD + S G Sbjct: 69 RMGLALGEAGIPFDVKSYGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 127 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 128 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 187 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHE 240 +SA++IR LVAAAVP+LD VTVLD+ G LL +A E + S+ Q + Sbjct: 188 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 247 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 ++ +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S + Sbjct: 248 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 307 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 + ++A VEQN+P + S E TD++EE +NYE+N+K+++T D Y ++RLSIA Sbjct: 308 RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIA 367 Query: 361 VVVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 VV+++ RL + G + +D + +I +V+ A G+N+ RGD I +T+++FL+ Sbjct: 368 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGA 427 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 + V + D L R + NAL L L+ + GL L R N+ A Sbjct: 428 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPA 477 >gi|218681104|ref|ZP_03529001.1| flagellar MS-ring protein [Rhizobium etli CIAT 894] Length = 282 Score = 336 bits (861), Expect = 7e-90, Method: Compositional matrix adjust. Identities = 169/273 (61%), Positives = 214/273 (78%), Gaps = 2/273 (0%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 +IL V V I + +AA FVN P + LYV L+ D+N+IS+AL+EANI+F++ +GSS Sbjct: 1 MILGGVGAVSIAIVLAAALFVNKPAQETLYVGLDQPDLNQISMALAEANINFQVGTDGSS 60 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 ISVP+ M GKAR+ LA +GLP+S+ N+GYELFD V S GLTSFMQE+TRVRALEGEIART Sbjct: 61 ISVPAGMTGKARLMLAERGLPNSA-NAGYELFDNVGSLGLTSFMQEVTRVRALEGEIART 119 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNL 202 IQSISGI AARVHIVMP++G+FRK +PTASVMIRA + +A +IRHLVA+AVP L Sbjct: 120 IQSISGITAARVHIVMPEVGNFRKQEQKPTASVMIRASAVTGRSAATSIRHLVASAVPGL 179 Query: 203 DMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSA 261 D+ DVT+LDS G+LL + + N L +SL IVQ +Q E+E NI+KALA FLG+DNFRS+ Sbjct: 180 DVDDVTILDSAGQLLASGDDASNSSLNRSLGIVQNVQQEVESNIDKALAPFLGMDNFRSS 239 Query: 262 VVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 V A+LN D QQI+E YDP+SKVERS+R +K+A Sbjct: 240 VTADLNTDAQQIQETTYDPESKVERSVRSTKEA 272 >gi|27381975|ref|NP_773504.1| flagellar MS-ring protein [Bradyrhizobium japonicum USDA 110] gi|27355145|dbj|BAC52129.1| flagellar M-ring protein [Bradyrhizobium japonicum USDA 110] Length = 553 Score = 335 bits (859), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 173/442 (39%), Positives = 277/442 (62%), Gaps = 2/442 (0%) Query: 18 GRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS 77 G R++ L + ++ + ++++ P ++ LY L DV R+ AL E NI F ++ Sbjct: 30 GPRRLMALGLIGFAVLVTVVGGAYYLSRPEFETLYTGLSREDVTRMGAALREQNIAFDVN 89 Query: 78 DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137 G ++SV S +AR+ LA +GLP+S+ NSGYELFDK+ S GLTSFMQE+T++RALEG Sbjct: 90 TAGDAVSVRPSQTMQARMLLAEKGLPTSA-NSGYELFDKIGSLGLTSFMQEVTKLRALEG 148 Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAA 197 EIART+Q + G+ AARVHIVMP GSFR P+ASV++R ++A++IRHLVAA Sbjct: 149 EIARTVQLMKGVKAARVHIVMPVRGSFRATQQPPSASVVLRTDGAIEARTAQSIRHLVAA 208 Query: 198 AVPNLDMGDVTVLDSTGKLLTANEMERNIL-GKSLSIVQAIQHEIEMNINKALAAFLGVD 256 A+P + VTVLD+ G +L A E E K S+ + + ++ NI KAL +LG+D Sbjct: 209 AIPGMSRDKVTVLDADGSMLLAEEDEATAAPTKMASLQKTVGGMVQENIRKALTPYLGLD 268 Query: 257 NFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVS 316 NF +V +L+ D +Q E VYDP+ + ERS+R ++ + S+ + + TV+QN+P Sbjct: 269 NFEVSVAPQLSTDKRQTNETVYDPEGRAERSVRNVREKESSQNADRSTPTTVQQNLPDQQ 328 Query: 317 DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA 376 S E+ ++E+ +N+E+++K+ T D Y +++L IAV+VN+ RL LG + Sbjct: 329 VNAGGSKNSSEDKTRREDVTNFEVSSKTTTTVSDGYLVKKLFIAVLVNRARLVADLGDKS 388 Query: 377 DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHF 436 +Q +DS LAEI+++ + A G++ +RGD I +T++DF+E + +SF++++++ Sbjct: 389 NQAIVDSKLAEISQLAATAGGLDKQRGDQIQVTAVDFIEGSRELAPVPPISFVEMINKQL 448 Query: 437 ATVINALVFLVGTLLVTFLGLH 458 +VINA+ L ++ + GL Sbjct: 449 GSVINAVTILAVASMLVWFGLR 470 >gi|323139667|ref|ZP_08074709.1| flagellar M-ring protein FliF [Methylocystis sp. ATCC 49242] gi|322395099|gb|EFX97658.1| flagellar M-ring protein FliF [Methylocystis sp. ATCC 49242] Length = 565 Score = 333 bits (854), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 202/565 (35%), Positives = 321/565 (56%), Gaps = 28/565 (4%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 +D++ + +LG ++ L + + + + ++++ P ++ LY L+ DV+RI Sbjct: 13 MDRITLLLDNLKALGTRKLAALGLTFALVVAIVSISAYYLSRPTFEVLYAGLDREDVSRI 72 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L I F I+ G+++SVP +AR+ LA +GLP S+ N+GYELFDKV + GLT Sbjct: 73 GSVLKSTGIPFDINTEGNAVSVPYGQTAQARMLLAERGLPQSA-NAGYELFDKVGALGLT 131 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 SFMQE+TRVRALEGE+ARTIQ I G+ AARVHIVMPD GSFR+ P+ASV+IR P Sbjct: 132 SFMQEVTRVRALEGELARTIQLIRGVKAARVHIVMPDEGSFRRAKQPPSASVIIRTEGPD 191 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEI 241 +A+AIRHLVA+++P +++ VTVL++ G +L++++ + + K+L++ + IQ +I Sbjct: 192 DTSAAQAIRHLVASSLPGMNVDQVTVLNTDGMILSSSDGDATDAVPVKTLTLEKNIQKDI 251 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + NI + L +L + NF+ V A +N D +QI E +YDPDSKVERS+R K++ RS+ S Sbjct: 252 QDNIRRTLTPYLRLPNFQVTVRARVNTDRKQINETIYDPDSKVERSVRTVKESSRSQDSS 311 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 +A TV N+P +S + K EE +NYE+++K++ T Y +E LS+AV Sbjct: 312 SAAATTVTNNIPQNGVNNADGKQSNDENKKNEELTNYEMSSKTVTTVSGGYNIEHLSVAV 371 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 ++N+ E Q ID L EI +++S+A G+ RGD + +T++DF+ N+ + Sbjct: 372 LINRSAFAEPNKEPPKQEAIDRQLKEIEQLISSAAGLKKERGDALKVTAVDFMFNEHEMT 431 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR-LHNIDDAKKGE------V 474 F+ +L H +++N + L LV GL RR L ++ E + Sbjct: 432 PVESPGFVAMLGSHLGSILNMIAALGIAALVVIFGLAPARRALLAESSTERTEPPPLIGM 491 Query: 475 GGKSILSP---PPISSAVT--TGLMPNDNIALDSSN--QDIFSHSRNLQSRINSYVSKQS 527 G +S SP P + G P IA+ +DI +++ R Sbjct: 492 GDQSFESPTFEAPTFDGIPGLAGATPGGAIAMSGPTLLEDISERRQDIARR--------- 542 Query: 528 DLRLLHMIEINEERFAKILRKWARS 552 +L +I+ +E + A IL++W RS Sbjct: 543 --KLEELIQNDEAQAAAILKQWMRS 565 >gi|115523187|ref|YP_780098.1| flagellar MS-ring protein [Rhodopseudomonas palustris BisA53] gi|115517134|gb|ABJ05118.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris BisA53] Length = 544 Score = 331 bits (849), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 190/527 (36%), Positives = 301/527 (57%), Gaps = 40/527 (7%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++++ P ++ LY L DV R+S AL +ANI F ++ G ++ V +AR LA + Sbjct: 41 YYISRPEFNVLYSGLSREDVTRVSAALRDANIAFDVNATGDTVLVRPGQAAQARTLLADK 100 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLPSS+S GYELFDK+ S GLTSFMQE+TRVRALEGEIARTIQ I G+ AARVHIVMP Sbjct: 101 GLPSSTSG-GYELFDKIGSLGLTSFMQEVTRVRALEGEIARTIQVIKGVKAARVHIVMPA 159 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN 220 GSFR+ P+ASV++R P+ ++A ++RHLVAAAVP + VTVLDS G LL ++ Sbjct: 160 RGSFRREQPVPSASVVLRTEGPAEARTARSVRHLVAAAVPGMTPDKVTVLDSDGSLLGSD 219 Query: 221 EMERNILGKSLSIVQ-AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 E +L+ +Q + I+ N++KAL +LG+DNF +V +L+ D +Q E +YD Sbjct: 220 EDGVGSTPTTLANLQRVVSRSIQDNVSKALTPYLGLDNFEVSVATQLSTDKRQTNETIYD 279 Query: 280 PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYE 339 PDS+V+RS+R ++ + S++ ++ TV+QN+P S E ++E+ +N+E Sbjct: 280 PDSRVQRSVRAVREKETSQSLDRQTPTTVQQNLPDQQVNAGNGNNSNEEKQRREDVTNFE 339 Query: 340 INTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN 399 +++K+I TT D + + ++ +AV+VN+ RL LG A + I++ +AEI ++ + A GI+ Sbjct: 340 VSSKTITTTSDGFAVTKMFLAVLVNRPRLVASLGDKASEAAIEAKVAEIAQLAATAAGID 399 Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA 459 RGD I +++++F+E + VSF D+L R +V++A+ L ++ + GL Sbjct: 400 RPRGDQIQVSAVEFIEGGRDLAPVPGVSFTDVLMRQAGSVVSAVTILAVAGMLIWFGLR- 458 Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL-------------DSSNQ 506 P + V G N+ L ++ Q Sbjct: 459 ------------------------PAINTVLAGTKSNEASQLLMNEGAGLLAGAGGAAAQ 494 Query: 507 DIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + NL ++ RL +++++E++ A IL++W R E Sbjct: 495 LGHEATPNLVGDVSMRAQHAPQRRLEQIVQLDEKQAAAILKQWIRQE 541 >gi|170748099|ref|YP_001754359.1| flagellar MS-ring protein [Methylobacterium radiotolerans JCM 2831] gi|170654621|gb|ACB23676.1| flagellar M-ring protein FliF [Methylobacterium radiotolerans JCM 2831] Length = 546 Score = 331 bits (849), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 199/556 (35%), Positives = 314/556 (56%), Gaps = 22/556 (3%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + L + + + LG R++ L V L + ++++ P + LY L DV+R+ Sbjct: 5 EHLQKLWTNILDLGPRRLIALGLVGLTVFLAVGLGAYYLSRPLRETLYSGLSRDDVSRMG 64 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 AL +A I F IS +G+S+ V +AR+ LA +GLP S +GYELF+ + S GLTS Sbjct: 65 AALKDAGIPFDISADGTSVLVSYGQTAQARMLLAEKGLPQSG-KAGYELFNDLGSLGLTS 123 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 FMQ+ITRVRALEGEIARTIQ++ + AARVHIVMPD GSFR+ +ASV++R + Sbjct: 124 FMQDITRVRALEGEIARTIQTLKSVKAARVHIVMPDPGSFRREQQPASASVVVRTEPAND 183 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK-LLTANEMERNILGKSLSIVQAIQHEIEM 243 A AIR LVAAA+P + VTVL++ G LL ++ G+ ++ Q++ EI+ Sbjct: 184 ATVAPAIRQLVAAAIPGMKPDKVTVLNTDGTVLLAGDDATTAPAGRLANLEQSVNREIQD 243 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 NI + L +LG +NF +VVA LN D + E +++PD KVERS+R K++ S+ P+ Sbjct: 244 NIRRTLTPYLGPNNFEVSVVARLNTDKTKTDETIFNPDQKVERSLRTIKESDSSQNRAPQ 303 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 T +QN+P R S + ++EE +N+EI++K++ T D Y ++ LS+AV+V Sbjct: 304 KPTTAQQNLPDQRVRSEGAENSSAESQRREELTNFEISSKTVQTVSDGYSIKTLSVAVLV 363 Query: 364 NKGRLTEVLGRSADQG---KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 N+ RL E L A G +D +AEI ++V++A G+N RGD + + ++ F++ Sbjct: 364 NRSRL-EALAGGAKGGTAPPLDPQVAEIEQLVTSAAGVNRARGDQLKVAAVSFIDEGQPL 422 Query: 421 SGTVQVSFMDILSRHFATVIN-ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + + F D+L R T+IN A + +VG LL+ F LR N A+ E G + Sbjct: 423 APAPALGFTDVLMRQSGTLINAATILIVGCLLIWF----GLRPAVNAILARPAETGTELA 478 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 L+ P S + S+ + S +L + ++++ +L ++E++E Sbjct: 479 LATPDAGSGLDG----------PSAEKGGTSPEPSLIEDLTEHMARSPIRKLEQLVELDE 528 Query: 540 ERFAKILRKW-ARSEI 554 E+ A IL++W R E+ Sbjct: 529 EQVANILKQWLTREEV 544 >gi|217976233|ref|YP_002360380.1| flagellar MS-ring protein [Methylocella silvestris BL2] gi|217501609|gb|ACK49018.1| flagellar M-ring protein FliF [Methylocella silvestris BL2] Length = 546 Score = 330 bits (847), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 181/453 (39%), Positives = 282/453 (62%), Gaps = 2/453 (0%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 QL Q + + LG R++ LA + + + A +F++ P + LY L+ DV+RI Sbjct: 6 QLEQIWANLLKLGSRRLIALAMIGVSIFAMTGLAGYFLSRPALETLYAGLDRQDVSRIGA 65 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 AL EA+I F ++ G++I V +AR+ LA +GLP+S N+G ELFDK+ S GLT+F Sbjct: 66 ALKEADIAFDVNAEGNTILVRYGETARARMLLAEKGLPNSP-NAGNELFDKLGSLGLTTF 124 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 MQE+TRVRALEGE+ARTIQ + G+ AARVH+VMPD GSFR+ P+ASV+IR Sbjct: 125 MQEVTRVRALEGELARTIQLMRGVKAARVHVVMPDEGSFRRTREPPSASVVIRTEMADDV 184 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEIEMN 244 +A++IRHLVA+AVP + M +VTVL++ G LL + N++ + G L++ + + EI N Sbjct: 185 GAAKSIRHLVASAVPGMTMEEVTVLNTEGVLLASGNDLADSAPGGMLTLERTVSQEILDN 244 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 I K L +LG+ NF+ +V LN D +Q E +Y+PDS+VERS+++++ Q S+ S +S Sbjct: 245 IRKTLTPYLGLRNFQVSVATRLNTDKKQTNETIYNPDSRVERSVKVTRQNQLSQNSTAQS 304 Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 TVE+N+P + + +S E + K EE +NYE+++K+IATT + ++ +S+AV++N Sbjct: 305 PTTVERNLPQENVKADDGKQSNEESKKSEELTNYEVSSKTIATTSGGFAIDNISVAVLIN 364 Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424 + L LG + L E+ +++++A G RGD I I+++DF++ Sbjct: 365 RASLMASLGDRPAPEALGKQLGELEQLIASAAGARKERGDAIKISAVDFIDAGRDLEPQP 424 Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457 ++L R V+NA+ LV TLL+ + GL Sbjct: 425 PPPVSELLMRQSGNVLNAVTILVVTLLLIWFGL 457 >gi|296447983|ref|ZP_06889889.1| flagellar M-ring protein FliF [Methylosinus trichosporium OB3b] gi|296254493|gb|EFH01614.1| flagellar M-ring protein FliF [Methylosinus trichosporium OB3b] Length = 551 Score = 330 bits (847), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 200/563 (35%), Positives = 324/563 (57%), Gaps = 28/563 (4%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 +D+ Q + LG ++ LA + + + + ++V+ P ++ LY L+ DV+RI Sbjct: 1 MDRFNQLRDNLIGLGPRKLSALALIFTLVLAITGLGAYYVSRPDFEVLYSGLDREDVSRI 60 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L + + F I+ G+++ V +AR+ LA +GLP S+ N+GYELFDKV S GLT Sbjct: 61 GAVLKSSGVAFDINPEGNAVLVRYGQTAQARMLLAERGLPQSA-NAGYELFDKVGSLGLT 119 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 SFMQE+TRVRALEGE+ARTIQ I G+ AARVHIV+PD GSFR++ P+ASV+IR +P Sbjct: 120 SFMQEVTRVRALEGELARTIQLIRGVKAARVHIVLPDEGSFRRVRQPPSASVVIRTESPD 179 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEI 241 K+A+AIRHLVAA++P + + VTVL++ G LL+A++ + K+L++ + + +I Sbjct: 180 DSKAAQAIRHLVAASIPGMTVDQVTVLNTDGMLLSASDGDATDAAPAKTLTLEKTVSKDI 239 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + NI + L +L + NF+ +V A +N D +Q E ++DP+S+VERS+R+ K+ S+ + Sbjct: 240 QDNIRRTLTPYLRLANFQVSVRARINTDRKQTNETIFDPESRVERSVRVVKENSTSQNNS 299 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKK-EEQSNYEINTKSIATTHDNYKLERLSIA 360 A +VE+N+P + + + +KK EE +N+E++TK++ T Y LE LSIA Sbjct: 300 TSQAASVERNVPQEKPQAGGEGKQSNDENKKSEELTNFELSTKTVTTVSGGYTLENLSIA 359 Query: 361 VVVNKGRLTEVLGRSADQGK---IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 V+VN+G L G D K ++ L EI ++V++A G+ RGDT+ ++++DF N+ Sbjct: 360 VLVNRGSLA---GSGKDAPKPEALERQLKEIEQLVASAAGVRKDRGDTVKVSAVDFAINE 416 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL------HNIDDAKK 471 + + + L+ +VINA ++ TLL+ F GL R ++ A Sbjct: 417 NDLAPVEPAGWSEALTHQLGSVINAGALILVTLLLVFFGLRPASRALLAEAPAPMETALA 476 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN-QDIFSHSRNLQSRINSYVSKQSDLR 530 +VG + + P I MP +D+ +DI + Q + + Sbjct: 477 DDVGPPLLGAEPSIELPFAPMEMPQFTGQMDTGLIEDIGGREKFNQQK-----------K 525 Query: 531 LLHMIEINEERFAKILRKWARSE 553 L +IE +E + A IL++W +E Sbjct: 526 LEQLIEADEMQAAAILKQWMYAE 548 >gi|90418370|ref|ZP_01226282.1| putative flagellar M-ring protein [Aurantimonas manganoxydans SI85-9A1] gi|90338042|gb|EAS51693.1| putative flagellar M-ring protein [Aurantimonas manganoxydans SI85-9A1] Length = 563 Score = 330 bits (845), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 207/557 (37%), Positives = 329/557 (59%), Gaps = 11/557 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 +A+ + Q + T+LG R+ L V L+ + L ++++ P + LY L+ +DV Sbjct: 3 LAVGGKAQQLLTNLTALGPRRLGALGLVGLLVVALVGLGSYYLSRPDMETLYSGLDRTDV 62 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 RI AL+EA I F + G +I P S AR+ LA +GLP S N+GYELFD + S Sbjct: 63 TRIGAALTEAGIPFDVDSKGDAILTPFSQTAPARMLLAEKGLPRSE-NAGYELFDNLGSI 121 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQEITRVRALEGEIARTIQ++ + AARVHIV+PD GSFR+ +P+ASV++R Sbjct: 122 GLTSFMQEITRVRALEGEIARTIQTLRNVRAARVHIVLPDKGSFRREQQKPSASVVVRTE 181 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239 N + + SA+AIR LVA+A+P++ +VT+L++ G LL + +E K I + Sbjct: 182 NGNDFGSAQAIRSLVASAIPSMTPEEVTILNADGTLLASGDEGVSAAPTKLFGIESVVSK 241 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 +IE +I + LA +LG+ NF+++VVA L+ D +QI E ++DP+S+VERS R ++ +S Sbjct: 242 DIEQSIRRTLAPYLGIGNFQTSVVARLDTDRKQISERIFDPESRVERSTRTIRENNQSAN 301 Query: 300 SQPESAVTVEQNMPHVSDRKV---PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 E+ V VEQ++ V +S E T+++EE +NYEIN K+I+TT D Y++ER Sbjct: 302 RASETPVGVEQDVREVDAAPAGGGGGEQSSEETERREELTNYEINEKTISTTSDGYQVER 361 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 LS+AVVV++ R+ E +G + +ID+ + EI +V++A+G ++ RGD I +T++DF+ + Sbjct: 362 LSVAVVVDRKRVLEAIGENPTDAQIDARIGEIKALVASASGFSADRGDQIEVTAVDFIAS 421 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH-ALRRLHNIDDAKKGEVG 475 S ++ R T+INAL L +++ + GL A+R + + A+ + Sbjct: 422 DDALEPIPAPSLGEMFMRQSGTLINALTILAVAIMLIWFGLKPAVRAIAAMPAAEGTTLA 481 Query: 476 GKSILSPPPI---SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 P + + A++ L+ +N+ DS + +N V RL Sbjct: 482 ALDDDEMPELDDDARALSESLL--ENLNYDSDPAGGSGNEIGFLDDLNFNVGNSPRARLE 539 Query: 533 HMIEINEERFAKILRKW 549 +++ NEE A ++++W Sbjct: 540 RLLDHNEEHAATVMKQW 556 >gi|170741410|ref|YP_001770065.1| flagellar MS-ring protein [Methylobacterium sp. 4-46] gi|168195684|gb|ACA17631.1| flagellar M-ring protein FliF [Methylobacterium sp. 4-46] Length = 572 Score = 329 bits (844), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 200/593 (33%), Positives = 314/593 (52%), Gaps = 72/593 (12%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M+ +Q + + + LG R+ L + L + ++++ P + LY L DV Sbjct: 1 MSGREQAERLWNNIIELGARRLAALGIIGLTVFLAVGLGAYYLSRPAQETLYGGLSRDDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 RI L +ANI F +S +G+++ VP +AR+ LA +GLP SS SGYELF+ + S Sbjct: 61 GRIGSVLKDANIPFDVSTDGTAVLVPYGHTAQARMLLAEKGLPQSS-KSGYELFNDLGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEIARTIQ++ G+ AARVHIV+PD GSFR+ P+ASV++R Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQTMKGVKAARVHIVLPDRGSFRREQQPPSASVVVRTE 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239 A+AIRHLVA+A+P + VTV+ + G LL + +++ GK ++ + + Sbjct: 180 PADDGSGAQAIRHLVASAIPGMKPERVTVIGTDGTLLLSGDDVGNAPTGKMANLEKLVNR 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 EI+ NI + L +LGV NF +V A LN D E +++PD +VERS++ +++ + S+ Sbjct: 240 EIQDNIRRTLTPYLGVGNFEVSVAARLNTDKTSTNETIFNPDQRVERSVKATRETENSQN 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + T +QN+P R S T K+E+ +NYEI++K+I T D Y ++++S+ Sbjct: 300 RSSQRPTTAQQNLPDQRTRSDGNDTSSTETQKREDLTNYEISSKTIQTVSDGYGIKQISV 359 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AV+VNK RL+ + G +A ID + EI ++V++A G + RGD + + ++ F+ + Sbjct: 360 AVLVNKSRLSSLAGPNAPPAAIDQQIGEIEQLVASAAGFSKERGDHVKVAAVGFVNDGAP 419 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH-ALRRLHNIDDAKK------- 471 +S ++L R AT+INA LV L+ + GL ALR + + A++ Sbjct: 420 LEPVPPLSLTEVLMRQSATLINAATILVVASLLIWFGLRPALRAILEVPAAEQEIAALAA 479 Query: 472 -----------------------------------GEVGGKSILSPPPISSAVTTGLMPN 496 G G + L PP ++S + Sbjct: 480 EGAAGAVPALPGAEAGSAAAGLLEGSPEAAALAAAGGTPGPAQLGPPVMASLID------ 533 Query: 497 DNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549 +L +R+NS K +L MIE +EE+ A IL++W Sbjct: 534 -----------------DLTNRMNSSPQK----KLEQMIEFDEEQAANILKRW 565 >gi|90422618|ref|YP_530988.1| flagellar MS-ring protein [Rhodopseudomonas palustris BisB18] gi|90104632|gb|ABD86669.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris BisB18] Length = 544 Score = 324 bits (830), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 191/541 (35%), Positives = 310/541 (57%), Gaps = 20/541 (3%) Query: 17 LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76 LG R+ +LA V L ++++ P ++ LY L D+ R+S L +AN+ F + Sbjct: 17 LGPRRLTVLAMVGLAVFFGVGGGAYYLSRPEFNVLYSGLSREDITRVSAVLRDANVPFDV 76 Query: 77 SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136 + G +I V +AR LA +GLPSS+S GYELFDK+ S GLTSFMQE+TRVRALE Sbjct: 77 NATGDTILVRPGQAAQARTLLADKGLPSSTSG-GYELFDKIGSLGLTSFMQEVTRVRALE 135 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVA 196 GEIARTIQ I G+ AARVHIVMP GSFR+ A PTASV++R P+ K+A ++RHLVA Sbjct: 136 GEIARTIQVIKGVKAARVHIVMPARGSFRREQAPPTASVVLRTDGPADAKTARSVRHLVA 195 Query: 197 AAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ-AIQHEIEMNINKALAAFLGV 255 AAVP + VTVLDS G LL A++ +++ +Q + I+ N++KAL +LG+ Sbjct: 196 AAVPGMTPDKVTVLDSDGSLLGADDDGTGTTPTTMANLQRVVSRLIQDNVSKALTPYLGL 255 Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV 315 DNF +V +L+ D +Q E VYDP+S+V+RS+R ++ + S++ ++ TV+QN+P Sbjct: 256 DNFEVSVATQLSTDKRQTNETVYDPESRVQRSVRAVRERETSQSLDRQTPTTVQQNLPDQ 315 Query: 316 SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS 375 S + ++E+ +NYE+++K+ T D Y + ++ +AV+VN+ RL LG Sbjct: 316 QLNAGGGKNSNDEKQRREDVTNYEVSSKTTTTVSDGYVVNKMFLAVLVNRPRLIASLGDK 375 Query: 376 ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435 + +++ +AEI+++ + A G++ RGD I +++++F+E + ++F ++L R Sbjct: 376 VSESAMEAKVAEISQLAATAAGLDRPRGDQIQVSAVEFIEGARDLAPVPGITFTEVLMRQ 435 Query: 436 FATVINALVFL-VGTLLVTFLGLHALRRLHNI--DDAKKGEVGGKSILSPPPISSAVTTG 492 ++A+ L V +L+ F LR N+ +K E + A Sbjct: 436 SGNFVSAITILAVAGMLIWF----GLRPAINVVLASSKSSEGAPLLAAEAAALLGADAAV 491 Query: 493 LMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 A+ + QD+ +++ + RL +++++E++ A IL++W R Sbjct: 492 AAQIAREAMPNLVQDVSRRAQHAPQK-----------RLEQIVQLDEKQAAAILKQWIRQ 540 Query: 553 E 553 E Sbjct: 541 E 541 >gi|188579876|ref|YP_001923321.1| flagellar MS-ring protein [Methylobacterium populi BJ001] gi|179343374|gb|ACB78786.1| flagellar M-ring protein FliF [Methylobacterium populi BJ001] Length = 570 Score = 323 bits (829), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 183/527 (34%), Positives = 300/527 (56%), Gaps = 22/527 (4%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++++ P + LY L DV+RI L + I F +S +G+++ V +AR+ LA + Sbjct: 41 YYLSRPAQETLYTGLSREDVSRIGGVLKDNGIPFDVSSDGTAVLVSFGHTAQARMLLAEK 100 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP SS SGYELF+ + S G+TSFMQE+TRVRALEGEIARTIQ + G+ AARVH+V+PD Sbjct: 101 GLPQSS-KSGYELFNDLGSLGMTSFMQEVTRVRALEGEIARTIQGMKGVRAARVHLVLPD 159 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK-LLTA 219 GSFR+ +ASV++R A+AIR LVA+A+P + VTV+ S G LL Sbjct: 160 RGSFRRDQQPASASVVVRTEPADDVSGAQAIRQLVASAIPGMKPDRVTVIGSEGTVLLAG 219 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 ++ GK ++ +++ E++ NI + L+ +LGV NF +V +LN D E +Y+ Sbjct: 220 DDAGTAPTGKMATLEKSVSREMQDNIRRTLSPYLGVGNFEVSVATQLNTDKTSTNETIYN 279 Query: 280 PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYE 339 PD +VERS+R ++++ ++ + + ++N+P R +S + KKE+ +NYE Sbjct: 280 PDQRVERSVRSVRESENAQNRNSQRPTSAQENLPDQRTRSDGNDQSSNESSKKEDLTNYE 339 Query: 340 INTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN 399 I+ K++ T D Y + RLS+AV+VN+ RLT + G D+ +D +AEI ++V +A G + Sbjct: 340 ISQKTVQTVSDGYAIRRLSVAVLVNRSRLTALAGPD-DKAALDKQIAEIEELVGSAAGFS 398 Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH- 458 RGDTI + ++ F+ + +S D++ + T+INA LV L+ + GL Sbjct: 399 KERGDTIKVAAVGFVNDGQPLEPVPPLSLTDVMMKQSGTLINAATILVVAGLLIWFGLRP 458 Query: 459 ALRRLHNIDDAKKGEVGGKSILSP---PPISSAVTTGLMPNDNIALDSSNQDI------- 508 ALR + +A + EV ++ P P +++ + +GL + N+AL + + Sbjct: 459 ALRAILATPEAAQSEVA--ALAGPEGAPALAAGMASGLAADGNMALAAPGTALPGAVGAG 516 Query: 509 ------FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549 L + +++ RL +I+I+EE+ A +L++W Sbjct: 517 EAAKLPAPGVAGLLEELEDKMARSPQKRLEQLIDIDEEQVAAVLKRW 563 >gi|254473325|ref|ZP_05086722.1| flagellar M-ring protein FliF [Pseudovibrio sp. JE062] gi|211957441|gb|EEA92644.1| flagellar M-ring protein FliF [Pseudovibrio sp. JE062] Length = 562 Score = 321 bits (822), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 201/566 (35%), Positives = 334/566 (59%), Gaps = 29/566 (5%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 MA + + + + LG R+++LA + L + AA + ++ P + LY LE DV Sbjct: 1 MAARENAEKIYSNLAELGAKRLMVLAFIGLFTFVAIGAAAYLLSRPEQEVLYANLERDDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +I +AL + I F +S +GS+ISV +AR+ LA +GLP S +GYELFD++ S Sbjct: 61 TQIGMALQASGIPFDVSADGSAISVGVGATARARMLLAEKGLPRGS-GAGYELFDEMGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQ +T++RALEGE+AR++QS+ G+ AARVH+V+P+ +FR+ +PTASV+IR Sbjct: 120 GLTSFMQSVTKIRALEGEVARSVQSMQGVKAARVHLVLPEKATFRRENQKPTASVLIRTE 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI-LGKSLSIVQAIQH 239 A++IR+LVAAAVP L VTVLD+ G+LL A E ++ G+ + + Sbjct: 180 GIQTNSIAQSIRYLVAAAVPGLTAEAVTVLDTEGQLLAAGEDAQSASTGRKAMLESNLAS 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 E I +ALA +LGV+NF +V A +N D Q++ E YDP+++VERS R+ ++ S+ Sbjct: 240 RKENAIRQALAPYLGVNNFEVSVSASVNTDNQRVSETSYDPETRVERSFRVVRENATSQN 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + E+ TVEQN+P + RS E +++EE +NYEI+++++ T D+Y++ER+SI Sbjct: 300 ASLENPTTVEQNLPEEAVSSQSGERSSEENERREELTNYEISSRTVETIFDDYRIERMSI 359 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSY-----------LAEINKIVSAATGINSRRGDTITI 408 AV+VN+ RL E + R + K D+ + EI +I++ A G+++ RGD +++ Sbjct: 360 AVLVNRDRLVEEMSRRVEGQKGDAVVEGEAADLTAKVEEIEEIIATAAGVDTARGDKVSV 419 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR--LHNI 466 ++++F+ + + ++ D+L R+ +V+NA L+ TL++ + GL + Sbjct: 420 SAVNFVLAGQQLAAIPERTWQDVLMRNMGSVVNAGAILIVTLMIIWFGLRPAVAFLIPKT 479 Query: 467 DDAKKG-EVGGKSILSPPPISSAVTTGLMPNDNIAL-DSSNQDIFSHSRNLQSRINSYVS 524 + ++G VG S S+AV G + ++ L D SN D S +++ V Sbjct: 480 EVVEEGLPVGANS------NSAAVRDGEIEGEDGQLPDYSNGDGLSG-----EGVDATVV 528 Query: 525 KQSDLRLLH-MIEINEERFAKILRKW 549 + +LR L +E+++ + A IL++W Sbjct: 529 NRDNLRKLERAVEMDDMQAAIILKQW 554 >gi|182679604|ref|YP_001833750.1| flagellar MS-ring protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182635487|gb|ACB96261.1| flagellar M-ring protein FliF [Beijerinckia indica subsp. indica ATCC 9039] Length = 547 Score = 318 bits (815), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 201/560 (35%), Positives = 317/560 (56%), Gaps = 31/560 (5%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + +Q+ + + + LG R++ LA V + + A +F++ P + LY L+ DV Sbjct: 1 MTVREQIERLWANLLKLGTKRLITLAVVGVSVFAMTGLAGYFLSRPALEVLYSGLDRQDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +RI+ AL EA+I F ++ +G+S+ V +AR+ LA +GLP+S N+G ELFDK+ S Sbjct: 61 SRIASALKEADIPFDVNADGNSVLVRFGETARARMLLAEKGLPNSP-NAGNELFDKLGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGE+ARTIQ + G+ AARVHIVMPD GSFR+ P+ASV++R Sbjct: 120 GLTSFMQEVTRVRALEGELARTIQLMHGVKAARVHIVMPDEGSFRRTRQPPSASVVVRME 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQ 238 + +A+AIRHLVA+AVP + + +VTVL++ G LL A+ ++ G + + +A+ Sbjct: 180 SNDDPSAAKAIRHLVASAVPGMTVEEVTVLNTEGVLLASGADTVDGAPSGM-IMLEKAVS 238 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 EI NI K L +LG+ NF+ +V A LN D +Q E +Y+PDSKVERSI +++ Q S+ Sbjct: 239 REIIDNIRKTLTPYLGLRNFQISVAARLNTDKRQTNETIYNPDSKVERSIHVTRQNQNSQ 298 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 S +S +VE+N+P + R +S E + K++E +NYEI++K + T Y ++ LS Sbjct: 299 NSTVQSPTSVERNLPQENARSDDGKQSTEESQKRDELTNYEISSKVVNTVSGGYGIDNLS 358 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 +AV+VN+ L LG + + EI +V++A G + RGD + I+++DF++ Sbjct: 359 VAVLVNRASLISSLGEKPTPDALAKQMNEIEMLVASAAGAHKERGDIVKISAVDFIDPSH 418 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR--LHN-------IDDA 469 S ++ R ++NA LV +L+ + GL + L N ID Sbjct: 419 ELEPQPPPSIGEMFLRQSTNLVNAATILVVAILLIWFGLRPATKAILANTRSTATAIDLR 478 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 + E PP + PN +D+ S R+ + Sbjct: 479 DEEEFQALEDDDAPPALPVWSPPSEPN-------LIEDLTSTPRHTPQK----------- 520 Query: 530 RLLHMIEINEERFAKILRKW 549 RL ++E +E++ A +L++W Sbjct: 521 RLEQIVEYDEQQAAAVLKQW 540 >gi|254559216|ref|YP_003066311.1| flagellar M-ring protein FliF [Methylobacterium extorquens DM4] gi|254266494|emb|CAX22258.1| Flagellar M-ring protein FliF [Methylobacterium extorquens DM4] Length = 559 Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 182/514 (35%), Positives = 294/514 (57%), Gaps = 7/514 (1%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++++ P + LY L DV+RI L + I F +S +G+++ V +AR+ LA + Sbjct: 41 YYLSRPAQEMLYTGLSREDVSRIGGVLKDNGIPFDVSSDGAAVLVSFGHTAQARMLLAEK 100 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP SS SGYELF+ + S G+TSFMQE+TRVRALEGEIARTIQ + G+ AARVH+V+PD Sbjct: 101 GLPQSS-KSGYELFNDLGSLGMTSFMQEVTRVRALEGEIARTIQGMKGVRAARVHLVLPD 159 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK-LLTA 219 GSFR+ +ASV++R A+AIR LVA+A+P + VTV+ S G LL Sbjct: 160 RGSFRRDQQPASASVVVRTEPADDTSGAQAIRQLVASAIPGMKPDRVTVIGSEGTVLLAG 219 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 ++ GK ++ +++ E++ NI + LA +LGV NF +V +LN D E +++ Sbjct: 220 DDAGTAPTGKMATLEKSVSREMQDNIRRTLAPYLGVGNFEISVATQLNTDKTSTNETIFN 279 Query: 280 PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYE 339 PD +VERS+R ++++ ++ + + ++N+P R +S + KKE+ +NYE Sbjct: 280 PDQRVERSVRSVRESENAQNRNSQRPTSAQENLPDQRTRSDGNDQSSNESSKKEDLTNYE 339 Query: 340 INTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN 399 I+ K++ T D Y + RLS+AV+VN+ RLT + G D+ +D +AEI ++V +A G + Sbjct: 340 ISQKTVQTVSDGYAIRRLSVAVLVNRSRLTALAGPD-DKASLDKQIAEIEELVGSAAGFS 398 Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH- 458 RGDTI + ++ F+ + +S D++ + T+INA LV L+ + GL Sbjct: 399 KERGDTIKVAAVGFVNDGQPMEPVPPLSLTDVMMKQSGTLINAATILVVAGLLIWFGLRP 458 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI---FSHSRNL 515 ALR + + + EV + L P+ +A T + AL S++ L Sbjct: 459 ALRAILATPETAQSEVAALAGLEGAPVLAADGTMALAAPGAALPGSSEAAKLPAPGVAGL 518 Query: 516 QSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549 + +++ RL +I+I+EE+ A +L++W Sbjct: 519 LEELEDKMARSPQKRLEQLIDIDEEQVAAVLKRW 552 >gi|300024598|ref|YP_003757209.1| flagellar M-ring protein FliF [Hyphomicrobium denitrificans ATCC 51888] gi|299526419|gb|ADJ24888.1| flagellar M-ring protein FliF [Hyphomicrobium denitrificans ATCC 51888] Length = 561 Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 193/562 (34%), Positives = 307/562 (54%), Gaps = 23/562 (4%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 Q + S LGR R++ L + + L +F + ++ LYV L D++ + Sbjct: 5 QFQNLYSSLKGLGRQRLMALGAAGFLVFALISIGSYFASRSSFETLYVGLTPPDISSMGR 64 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L++A I F S +G+ + V +AR LA +GLP S N+GYELFDK+ + GLTSF Sbjct: 65 ELAQAGIPFEASLDGTKLGVAVGQAEQARALLAEKGLPGSP-NAGYELFDKLGALGLTSF 123 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 MQE+TRVRALEGE++RTIQ + GI AARVH+ +PD R PTASV+I+ S Sbjct: 124 MQEVTRVRALEGELSRTIQYLKGIRAARVHLYLPDQNGLRTKKQTPTASVVIKTDVASDA 183 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQAIQHEIEMN 244 +A AI+HL+AAA+P++ +V V+ + G LL ++ + L + + I +++ + Sbjct: 184 TAAPAIKHLIAAAIPDMKPDEVQVIGTDGTLLGGSGSPSGDVPVQMLDLERTISTQVQDS 243 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 + +AL+ +LG+DNF + +A LN+D Q E YDP+SKVERS R+ K+AQ S + Sbjct: 244 VRRALSPYLGIDNFEVSAIARLNIDKHQTTETKYDPESKVERSTRVIKEAQSSTDGSGRT 303 Query: 305 AVTVEQNMPHVSDRKVPLPRSLENT----DKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 V+VEQN+P+ + P + E D+KEE +NYEI++ S +TT + YK+ +S+A Sbjct: 304 DVSVEQNIPNEA------PTTKEQNKRAQDRKEETTNYEISSHSASTTSEGYKVNNISLA 357 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 VVVNK R+ E++G+ A I+ +AEI K+ +A G++++RGD I++ +++F ++ + Sbjct: 358 VVVNKKRIAEIIGKDAKTEDIEKQVAEIEKVALSAAGLDTKRGDRISVAAVEFAQSPFGD 417 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI- 479 + +L T I +L L+ +V F G RL A G ++ Sbjct: 418 ITAPSTDWSVMLMGLAGTGIKSLTILLIAAIVVFAGFKPAMRLLLTGSAATAIEGNGAVA 477 Query: 480 -LSPPPISSA--VTTGL-MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL------ 529 L+ PPI+ A VT L MP L + F +S L Sbjct: 478 ALAGPPIADAGGVTAPLDMPEMASPLLEPGANPFDSDFGSSGFAGDGMSFGRSLAFGPVE 537 Query: 530 RLLHMIEINEERFAKILRKWAR 551 +L +I+ +E++ I++ W + Sbjct: 538 KLGAIIDRDEDQATAIMKHWVK 559 >gi|240137205|ref|YP_002961674.1| Flagellar M-ring protein FliF [Methylobacterium extorquens AM1] gi|240007171|gb|ACS38397.1| Flagellar M-ring protein FliF [Methylobacterium extorquens AM1] Length = 559 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 182/514 (35%), Positives = 292/514 (56%), Gaps = 7/514 (1%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++++ P + LY L DV+RI L + I F +S +G+++ V +AR+ LA + Sbjct: 41 YYLSRPAQEMLYTGLSREDVSRIGGVLKDNGIPFDVSSDGTAVLVSFGHTAQARMLLAEK 100 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP SS SGYELF+ + S G+TSFMQE+TRVRALEGEIARTIQ + G+ AARVH+V+PD Sbjct: 101 GLPQSS-KSGYELFNDLGSLGMTSFMQEVTRVRALEGEIARTIQGMKGVRAARVHLVLPD 159 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK-LLTA 219 GSFR+ +ASV++R A+AIR LVA+A+P + VTV+ S G LL Sbjct: 160 RGSFRRDQQPASASVVVRTEPADDTSGAQAIRQLVASAIPGMKPDRVTVIGSEGTVLLAG 219 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 ++ GK ++ +++ E++ NI + LA +LGV NF +V +LN D E +++ Sbjct: 220 DDAGTAPTGKMATLEKSVSREMQDNIRRTLAPYLGVGNFEISVATQLNTDKTSTNETIFN 279 Query: 280 PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYE 339 PD +VERS+R ++++ ++ + + ++N+P R +S + KKE+ +NYE Sbjct: 280 PDQRVERSVRSVRESENAQNRNSQRPTSAQENLPDQRTRSDGNDQSSNESSKKEDLTNYE 339 Query: 340 INTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN 399 I+ K++ T D Y + RLS+AV+VN+ RLT + G D+ +D +AEI ++V +A G + Sbjct: 340 ISQKTVQTVSDGYAIRRLSVAVLVNRSRLTALAGPD-DKASLDKQIAEIEELVGSAAGFS 398 Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH- 458 RGDTI + ++ F+ + +S D++ + T+INA LV L+ + GL Sbjct: 399 KERGDTIKVAAVGFVNDGQPMEPVPPLSLTDVMMKQSGTLINAATILVVAGLLIWFGLRP 458 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS---RNL 515 ALR + + + EV + P +A T + AL S + S L Sbjct: 459 ALRAILATPETAQSEVAALAGPEGAPALAADGTMALAAPGAALPGSGEAAKLPSPGVAGL 518 Query: 516 QSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549 + +++ RL +I+I+EE+ A +L++W Sbjct: 519 LEELEDKMARSPQKRLEQLIDIDEEQVAAVLKRW 552 >gi|218528674|ref|YP_002419490.1| flagellar MS-ring protein [Methylobacterium chloromethanicum CM4] gi|218520977|gb|ACK81562.1| flagellar M-ring protein FliF [Methylobacterium chloromethanicum CM4] Length = 559 Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 181/514 (35%), Positives = 291/514 (56%), Gaps = 7/514 (1%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++++ P + LY L DV+RI L + I F +S +G+++ V +AR+ LA + Sbjct: 41 YYLSRPAQEMLYTGLSREDVSRIGGVLKDNGIPFDVSSDGTAVLVSFGHTAQARMLLAEK 100 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP SS SGYELF+ + S G+TSFMQE+TRVRALEGEIARTIQ + G+ AARVH+V+PD Sbjct: 101 GLPQSS-KSGYELFNDLGSLGMTSFMQEVTRVRALEGEIARTIQGMKGVRAARVHLVLPD 159 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK-LLTA 219 GSFR+ +ASV++R A+AIR LVA+A+P + VTV+ S G LL Sbjct: 160 RGSFRRDQQPASASVVVRTEPADDTSGAQAIRQLVASAIPGMKPDRVTVIGSEGTVLLAG 219 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 ++ GK ++ +++ E++ NI + LA +LGV NF +V +LN D E +++ Sbjct: 220 DDAGTAPTGKMATLEKSVSREMQDNIRRTLAPYLGVGNFEISVATQLNTDKTSTNETIFN 279 Query: 280 PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYE 339 PD +VERS+R ++++ ++ + + ++N+P R +S + KKE+ +NYE Sbjct: 280 PDQRVERSVRSVRESENAQNRNSQRPTSAQENLPDQRTRSDGNDQSSNESSKKEDLTNYE 339 Query: 340 INTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN 399 I+ K++ T D Y + RLS+AV+VN+ RLT + G D+ +D +AEI ++V +A G + Sbjct: 340 ISQKTVQTVSDGYAIRRLSVAVLVNRSRLTALAGPD-DKASLDKQIAEIEELVGSAAGFS 398 Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH- 458 RGDTI + ++ F+ + +S D++ + T+INA LV L+ + GL Sbjct: 399 KERGDTIKVAAVGFVNDGQPMEPVPPLSLTDVMMKQSGTLINAATILVVAGLLIWFGLRP 458 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI---FSHSRNL 515 ALR + + + EV + P +A T + AL S + L Sbjct: 459 ALRAILATPETAQSEVAALAGPEGAPALAADGTMALAAPGAALPGSGEAAKLPAPGVAGL 518 Query: 516 QSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549 + +++ RL +I+I+EE+ A +L++W Sbjct: 519 LEELEDKMARSPQKRLEQLIDIDEEQVAAVLKRW 552 >gi|163850071|ref|YP_001638114.1| flagellar MS-ring protein [Methylobacterium extorquens PA1] gi|163661676|gb|ABY29043.1| flagellar M-ring protein FliF [Methylobacterium extorquens PA1] Length = 559 Score = 310 bits (795), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 181/529 (34%), Positives = 290/529 (54%), Gaps = 37/529 (6%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++++ P + LY L DV+RI L + I F +S +G+++ V +AR+ LA + Sbjct: 41 YYLSRPAQEMLYTGLSREDVSRIGGVLKDNGIPFDVSSDGTAVLVSFGHTAQARMLLAEK 100 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP SS SGYELF+ + S G+TSFMQE+TRVRALEGEIARTIQ + G+ AARVH+V+PD Sbjct: 101 GLPQSS-KSGYELFNDLGSLGMTSFMQEVTRVRALEGEIARTIQGMKGVRAARVHLVLPD 159 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK-LLTA 219 GSFR+ +ASV++R A+AIR LVA+A+P + VTV+ S G LL Sbjct: 160 RGSFRRDQQPASASVVVRTEPADDTSGAQAIRQLVASAIPGMKPDRVTVIGSEGTVLLAG 219 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 ++ GK ++ +++ E++ NI + LA +LGV NF +V +LN D E +++ Sbjct: 220 DDAGTAPTGKMATLEKSVSREMQDNIRRTLAPYLGVGNFEISVATQLNTDKTSTNETIFN 279 Query: 280 PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYE 339 PD +VERS+R ++++ ++ + + ++N+P R +S + KKE+ +NYE Sbjct: 280 PDQRVERSVRSVRESENAQNRNSQRPTSAQENLPDQRTRSDGNDQSSNESSKKEDLTNYE 339 Query: 340 INTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN 399 I+ K++ T D Y + RLS+AV+VN+ RLT + G D+ +D +AEI ++V +A G + Sbjct: 340 ISQKTVQTVSDGYAIRRLSVAVLVNRSRLTALAGPD-DKASLDKQIAEIEELVGSAAGFS 398 Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH- 458 RGDTI + ++ F+ + +S D++ + T+INA LV L+ + GL Sbjct: 399 KERGDTIKVAAVGFVNDGQPMEPVPPLSLTDVMMKQSGTLINAATILVVAGLLIWFGLRP 458 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLM------------------PNDNIA 500 ALR + + + EV ++ P + G M P IA Sbjct: 459 ALRAILATPETAQSEVA--ALAGPEGAPALAADGTMALAAPGAALPGSGEAAKLPAPGIA 516 Query: 501 LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549 L + +++ RL +I+I+EE+ A +L++W Sbjct: 517 -------------GLLEELEDKMARSPQKRLEQLIDIDEEQVAAVLKRW 552 >gi|312115289|ref|YP_004012885.1| flagellar M-ring protein FliF [Rhodomicrobium vannielii ATCC 17100] gi|311220418|gb|ADP71786.1| flagellar M-ring protein FliF [Rhodomicrobium vannielii ATCC 17100] Length = 547 Score = 297 bits (761), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 175/466 (37%), Positives = 272/466 (58%), Gaps = 10/466 (2%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 MAI DQ+ S LG R+ L +V + + + ++V+ D LYV L SDV Sbjct: 13 MAIRDQIDALRVSLLGLGARRLAALVAVGVAIVAIVGVGSYYVSRAEKDVLYVGLTASDV 72 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +RI L EA I F + + I V +AR+ LA +GLP++++ +GYELFDK+ S Sbjct: 73 SRIGAVLKEAGIPFDSNSEANKIFVNRGDTARARMILAERGLPNNAT-AGYELFDKLGSL 131 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQ ITRVRALEGEIARTI+++ + +ARVH+VM D GSFR+ TASV+++ Sbjct: 132 GLTSFMQNITRVRALEGEIARTIEAMRAVNSARVHLVMADAGSFRREPQAATASVVVKPA 191 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-GKSLSIVQAIQH 239 + SA AIR +VA+AVP + V+VL + G +L+A + + GK L + + + Sbjct: 192 G-AEPPSAAAIRQIVASAVPGMKPDHVSVLSTDGTILSAGDDGPGVASGKMLDLEKQVSR 250 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 EI NI K L LG+ NF ++V LN+D +QI E +DP+SK ERS R K++ S+ Sbjct: 251 EINDNIRKTLTPVLGLGNFETSVTVRLNLDRKQINETAFDPESKAERSTRTVKESSNSQN 310 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + + ++VEQN+P P +S +++KEE +NYE+++KS+ T + Y++E +++ Sbjct: 311 TNQKWNISVEQNIPTDQQNTKPSDQSKRASERKEETTNYEVSSKSVTTQSEGYRVENIAV 370 Query: 360 AVVVNKGRLTEVLGRSADQGKI--DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 AVV+N+ L +AD K D + + ++VS+A G++S RGD T+ ++DF Sbjct: 371 AVVLNRKPLLA----AADSAKTAPDEQIRVVERLVSSAAGLDSLRGDKATVVALDFAGGN 426 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 F+ ++F D + + + A L+ T+L +GL R+ Sbjct: 427 EFDQAP-SLTFWDHVMEGLGSYVIAAALLISTILFVAVGLRPSLRM 471 >gi|304392498|ref|ZP_07374438.1| flagellar M-ring protein FliF [Ahrensia sp. R2A130] gi|303295128|gb|EFL89488.1| flagellar M-ring protein FliF [Ahrensia sp. R2A130] Length = 535 Score = 289 bits (739), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 178/517 (34%), Positives = 283/517 (54%), Gaps = 41/517 (7%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 +F+ P ++ LYV L D+NRI ALSEA I + +S +G+S+ V + +AR LA + Sbjct: 50 WFLAQPTFETLYVGLARDDINRIGPALSEAGIGYDVSSDGTSVLVQAGQAARARSILAER 109 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP SS SGYELFD + S GLTSFMQE+TRVRALEGEIAR+++SI GI ARVHIV PD Sbjct: 110 GLPRSS-GSGYELFDNLGSLGLTSFMQEVTRVRALEGEIARSVRSIEGIQGARVHIVQPD 168 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TA 219 SF + +ASV+I++ + + A+A+RHLVAAAVP L +G+VTVLDS+G++L + Sbjct: 169 RSSFSARNRQASASVLIQSNGRDIDRVAKAVRHLVAAAVPQLAVGNVTVLDSSGQVLASG 228 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 +E + +L + + +++ + NI + L LG NFR AV A L+ D + E +YD Sbjct: 229 DEPASSTADGALGMQRLVENRLSENIARVLTPQLGASNFRVAVHAVLDTDQRTTSETIYD 288 Query: 280 PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV-PLPRSLENTDKKEEQSNY 338 P+S+VERSI++ + +SQ TVEQ++P + P S ++++EE +NY Sbjct: 289 PESRVERSIKVVRTQDTDTSSQGGQTTTVEQDIPEEQPAQANAGPSSNRESERREETTNY 348 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E+++K I++ + Y + +L+ +VVVN SA + L + AA G+ Sbjct: 349 EMSSKRISSVRNGYSVSKLTASVVVNA---------SALGAEPAVRLEALRASTQAAAGV 399 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 ++ RGD I +++++F+ + T + + +V+ AL FL+ +LV + Sbjct: 400 DAGRGDVIDVSAVEFVTAADL-AATTSSPLLLQATAQLGSVVKALAFLIALVLVLRFAIK 458 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 L + V G+ ++ P ++ + + P + A Sbjct: 459 PLVAAAASALSPPQSVEGEGAIAGPSNNTRLAGPMGPPPSAA------------------ 500 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 RL +++ + ER A++LR W R+ E Sbjct: 501 ----------DRLAALVDQDSERAAEVLRSWVRAGEE 527 >gi|46204512|ref|ZP_00209445.1| COG1766: Flagellar biosynthesis/type III secretory pathway lipoprotein [Magnetospirillum magnetotacticum MS-1] Length = 435 Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 150/383 (39%), Positives = 227/383 (59%), Gaps = 9/383 (2%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++++ P + LY L DV+RI L + I F +S +G+++ V +AR+ LA + Sbjct: 41 YYLSRPAQETLYTGLSREDVSRIGGVLKDNGIPFDVSSDGTAVLVSFGHTAQARMLLAEK 100 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP SS SGYELF+ + S G+TSFMQE+TRVRALEGEIARTIQ + G+ AARVH+V+PD Sbjct: 101 GLPQSS-KSGYELFNDLGSLGMTSFMQEVTRVRALEGEIARTIQGMKGVRAARVHLVLPD 159 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK-LLTA 219 GSFR+ +ASV++R A+AIR LVA+A+P + VTV+ S G LL Sbjct: 160 RGSFRREQQPASASVVVRTEPADDVSGAQAIRQLVASAIPGMKPDRVTVIGSEGTVLLAG 219 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 ++ GK ++ +++ E++ NI + LA +LGV NF +V +LN D E +Y+ Sbjct: 220 DDAGTAPTGKMATLEKSVSREMQDNIRRTLAPYLGVGNFEVSVATQLNTDKTSTNETIYN 279 Query: 280 PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYE 339 PD +VERS+R ++ + ++ + + ++N+P R +S + KKE+ +NYE Sbjct: 280 PDQRVERSVRSVRENENAQNRNSQRPTSAQENLPDQRTRSDGNDQSSNESSKKEDLTNYE 339 Query: 340 INTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN 399 I+ K+I T D Y + RLS+AV+VN+ RLT + G D+ ID +AEI I S Sbjct: 340 ISQKTIQTVSDGYAIRRLSVAVLVNRSRLTAMAG-PDDKAGIDKQIAEIEXIGSGLPXPR 398 Query: 400 S------RRGDTITITSMDFLEN 416 RGD I + ++ F+ + Sbjct: 399 PRXLPARERGDIIKVAAVGFIND 421 >gi|265985824|ref|ZP_06098559.1| flagellar M-ring protein FliF [Brucella sp. 83/13] gi|264664416|gb|EEZ34677.1| flagellar M-ring protein FliF [Brucella sp. 83/13] Length = 324 Score = 262 bits (670), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 145/314 (46%), Positives = 206/314 (65%), Gaps = 5/314 (1%) Query: 4 LDQLLQFFKSGT--SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 QL++ K GT LG +++ L V + + ++ P Y+ LYV L DVN Sbjct: 10 FQQLIEQLK-GTLGKLGARKLIALGLVGAALMGAILYTSIYLGCPSYETLYVGLSRDDVN 68 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 + +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S G Sbjct: 69 CMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 127 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 128 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 187 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHE 240 +SA++IR LVAAAVP+LD VTVLD+ G LL +A E + S+ Q + Sbjct: 188 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVAGH 247 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 ++ +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S VERS+R+ +++ S + Sbjct: 248 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESCVERSVRVVRESGDSRNN 307 Query: 301 QPESAVTVEQNMPH 314 + ++A VEQN+P Sbjct: 308 RNDNATGVEQNIPQ 321 >gi|288962688|ref|YP_003452982.1| flagellar M-ring protein [Azospirillum sp. B510] gi|288914954|dbj|BAI76438.1| flagellar M-ring protein [Azospirillum sp. B510] Length = 579 Score = 260 bits (665), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 162/452 (35%), Positives = 254/452 (56%), Gaps = 6/452 (1%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 SLGR R+L+LA L ++ ++ PH LY LE ++ RI+ A+ E + Sbjct: 14 SLGRGRLLVLAGTGLGIVLAVAGMALLLSQPHMTALYSGLEPAEAGRIAKAVQEMGVPVN 73 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135 +G++ISVP + V + R+ LA +GLPS GYELFD G+TSFMQ I R+RA+ Sbjct: 74 AGFDGTTISVPQADVSRVRMALAEKGLPSRG-GVGYELFDTDKPLGITSFMQRINRLRAM 132 Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRH 193 EGE+ RTI+++SG+ AARVHIV+P+ F + +PTASV++R + K A +IRH Sbjct: 133 EGELGRTIETLSGVEAARVHIVLPEREEFSRSAPKPTASVVVRMRGRAAMDRKQALSIRH 192 Query: 194 LVAAAVPNLDMGDVTVLDSTGK-LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAF 252 LV+AAVPNL VTV+DS+G+ LLT ++ ++ + A + + + + L A Sbjct: 193 LVSAAVPNLKPSAVTVMDSSGELLLTEDDGPGLASARTDGLRVAAETRVARAVEQMLTAR 252 Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNM 312 LG N R V AE+ + +R +DP+S+V RS + ++ +RS+ S E VT EQN+ Sbjct: 253 LGAGNVRVQVAAEVETKREVVRSQSFDPNSQVVRSTQTVQEQERSQDSNGEPPVTAEQNL 312 Query: 313 PHVSDR-KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV 371 P R + P+S +T ++EE NYEI+ S T + + RLS+AV+VN T Sbjct: 313 PQRDVRAQSQGPQSSNDTKRQEETVNYEISNVSRETVIEPGDVRRLSVAVLVNGTWKTAP 372 Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE-NQLFNSGTVQVSFMD 430 G + + L + ++V +A G + RGD +T+ +++F++ + + Sbjct: 373 DGTRQYEPRSTEELRRLGELVRSAMGFSEARGDRVTVDNLEFVDLAPDLTPRPLGDEIAE 432 Query: 431 ILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 L+R+ T+I ++ LV + LV +GL L R Sbjct: 433 TLTRNIMTLIQWVILLVLSALVILVGLRPLIR 464 >gi|261216584|ref|ZP_05930865.1| flagellar M-ring protein FliF [Brucella ceti M13/05/1] gi|261319454|ref|ZP_05958651.1| flagellar M-ring protein FliF [Brucella ceti M644/93/1] gi|260921673|gb|EEX88241.1| flagellar M-ring protein FliF [Brucella ceti M13/05/1] gi|261292144|gb|EEX95640.1| flagellar M-ring protein FliF [Brucella ceti M644/93/1] Length = 332 Score = 253 bits (645), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 147/322 (45%), Positives = 211/322 (65%), Gaps = 2/322 (0%) Query: 17 LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76 LG +++ L V + + ++ P Y+ LYV L DVNR+ +AL EA I F + Sbjct: 12 LGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVNRMGLALGEAGIPFDV 71 Query: 77 SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136 +GSSI VP AR++LA +GLP+S+ N+GYELFD + S GLTSFMQEITRVRALE Sbjct: 72 KSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGLTSFMQEITRVRALE 130 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVA 196 GEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA +SA++IR LV Sbjct: 131 GEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGGFSAESAQSIRQLVT 190 Query: 197 AAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255 AAVP+LD VTVLD+ G LL +A E + S+ Q + ++ +I KALA +LG+ Sbjct: 191 AAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASHVDDSIRKALAPYLGL 250 Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV 315 +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S ++ ++A VEQN+P Sbjct: 251 GHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNNRNDNATGVEQNIPQE 310 Query: 316 SDRKVPLPRSLENTDKKEEQSN 337 + S E TD++EE +N Sbjct: 311 QIQNRNGESSTEKTDRREELTN 332 >gi|218508689|ref|ZP_03506567.1| flagellar MS-ring protein [Rhizobium etli Brasil 5] Length = 332 Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 151/357 (42%), Positives = 213/357 (59%), Gaps = 43/357 (12%) Query: 206 DVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVA 264 DVT+LDS G+LL + +E + L +SL+IVQ +Q E+E NI+KALA FLG+DNFRS+V A Sbjct: 2 DVTILDSAGQLLASGDEASNSSLNRSLNIVQNVQQEVESNIDKALAPFLGMDNFRSSVTA 61 Query: 265 ELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRK--VPL 322 +LN D QQI+E YDP+SKVERS+R +K+AQ+S+ Q ++A TVEQN+P + Sbjct: 62 DLNTDAQQIQETTYDPESKVERSVRSTKEAQQSQQKQSDNATTVEQNIPQAAPDAGGASG 121 Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382 P S + +DK+EEQ +Y+IN+++ ATT ++YK+E+LSIAVVVN Sbjct: 122 PESQDKSDKREEQIHYDINSRTTATTRNSYKVEKLSIAVVVN------------------ 163 Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINA 442 ++A GI+++RGD +T+T+MDFLENQL T V MD+LSR+ A +IN+ Sbjct: 164 ----------TSAAGIDAKRGDVVTVTAMDFLENQLLEDATGGVRVMDMLSRNLAGIINS 213 Query: 443 LVFLVGTLLVTFLGLHALRRLHNIDDAKK------GEVGGKSILSPPPISSAVTTGLMPN 496 L F+ +V ++GL L R + + A E G + P A LM Sbjct: 214 LAFVAVAFVVVWMGLRPLVRSVSGNGASAVLGDATPEAAGLELPDFAPAVGAPGGALM-- 271 Query: 497 DNIALD---SSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 D D S +D+ S + N V + + +L M+EINEER AKILRKWA Sbjct: 272 DGFGSDFGFDSTEDLLSLGDD-DGNFNRRVKEGPERKLARMVEINEERAAKILRKWA 327 >gi|218460680|ref|ZP_03500771.1| flagellar MS-ring protein [Rhizobium etli Kim 5] Length = 310 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 139/318 (43%), Positives = 202/318 (63%), Gaps = 28/318 (8%) Query: 254 GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP 313 G+DNFRS+V A+LN D QQI+E YDP+SKVERS+R +K+AQ+S+ Q ++A TVEQN+P Sbjct: 1 GMDNFRSSVTADLNTDAQQIQETTYDPESKVERSVRSTKEAQQSQQKQSDNATTVEQNIP 60 Query: 314 HVSDRKVPLP--RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV 371 + S + +DK+EEQ+NYEIN+K+ ATT ++Y++E+LSIAVVVNKGR+ ++ Sbjct: 61 QAAPDAGGAGGPESQDKSDKREEQTNYEINSKTTATTRNSYQVEKLSIAVVVNKGRIAKM 120 Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDI 431 +G ADQ K+D+Y+AE+ KIV++A GI+++RGD +T+T+MDFLENQL T V MD+ Sbjct: 121 VGEPADQAKVDAYIAEMQKIVASAAGIDAKRGDVVTVTAMDFLENQLLEDATGGVRVMDM 180 Query: 432 LSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTT 491 LSR+ A +IN+L F+ +V ++GL L R + G G ++ P S+ + Sbjct: 181 LSRNLAGIINSLAFVAVAFVVVWMGLRPLVR------SVSGNGAGAALGDSSPESAGLE- 233 Query: 492 GLMPN-------------DNIALD---SSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 +P+ D D S +D+ S + N V + + +L M+ Sbjct: 234 --LPDFAPAAGASGGALMDGFGSDFGFDSTEDLLSLGDD-DGNFNRRVKEGPERKLARMV 290 Query: 536 EINEERFAKILRKWARSE 553 EINEER AKILRKWA E Sbjct: 291 EINEERAAKILRKWAIDE 308 >gi|254706488|ref|ZP_05168316.1| flagellar MS-ring protein [Brucella pinnipedialis M163/99/10] Length = 330 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 146/314 (46%), Positives = 208/314 (66%), Gaps = 5/314 (1%) Query: 4 LDQLLQFFKSGT--SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 QL++ K GT LG +++ L V + + ++ P Y+ LYV L DVN Sbjct: 5 FQQLIEQLK-GTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 R+ +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S G Sbjct: 64 RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 122 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 123 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 182 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHE 240 +SA++IR LVAAAVP+LD VTVLD+ G LL +A E + S+ Q + Sbjct: 183 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 242 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 ++ +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S + Sbjct: 243 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 302 Query: 301 QPESAVTVEQNMPH 314 + ++A VEQN+P Sbjct: 303 RNDNATGVEQNIPQ 316 >gi|261313942|ref|ZP_05953139.1| flagellar MS-ring protein [Brucella pinnipedialis M163/99/10] gi|261302968|gb|EEY06465.1| flagellar MS-ring protein [Brucella pinnipedialis M163/99/10] Length = 335 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 146/314 (46%), Positives = 208/314 (66%), Gaps = 5/314 (1%) Query: 4 LDQLLQFFKSGT--SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 QL++ K GT LG +++ L V + + ++ P Y+ LYV L DVN Sbjct: 10 FQQLIEQLK-GTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 68 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 R+ +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S G Sbjct: 69 RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 127 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 128 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 187 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHE 240 +SA++IR LVAAAVP+LD VTVLD+ G LL +A E + S+ Q + Sbjct: 188 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 247 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 ++ +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S + Sbjct: 248 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 307 Query: 301 QPESAVTVEQNMPH 314 + ++A VEQN+P Sbjct: 308 RNDNATGVEQNIPQ 321 >gi|288960029|ref|YP_003450369.1| flagellar M-ring protein [Azospirillum sp. B510] gi|288912337|dbj|BAI73825.1| flagellar M-ring protein [Azospirillum sp. B510] Length = 553 Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 169/563 (30%), Positives = 286/563 (50%), Gaps = 24/563 (4%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++ LLQ ++ LG R+ + V L+ I F+ +++P + LY +L+ ++ I Sbjct: 1 MNNLLQTLRN---LGPARLAAIGGVGLLLIGFFVYLTTRLSTPEMELLYAELQPTEAAAI 57 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + L EA + F + +G+ I VP+ VG R+ +AAQGLPS S GYELFDK FG T Sbjct: 58 AKKLEEAKVPFSVDKSGTKIMVPADQVGPMRMRMAAQGLPSGGS-VGYELFDKGEGFGAT 116 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 SFMQ I +RALEGE+ART+Q+++G+ ARVH+V+P F + TASV ++ + P Sbjct: 117 SFMQNINHLRALEGEMARTVQTLNGVQQARVHLVLPKRELFARQQNPATASVFLK-LRPG 175 Query: 184 VYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQAI 237 S E AI+ L+AA+VPNLD ++++D GKLL T ++ ++ + QA Sbjct: 176 AQLSRENIQAIQQLIAASVPNLDPNRISIVDDKGKLLARGTGSDTAEAMMASAEEKKQAY 235 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + + I L LG R+ V A+L+ D + ++DPDS+V RS + ++ S Sbjct: 236 EGRLARTIEDLLGRTLGYGKVRAEVSADLDFDRITTQSEIFDPDSQVVRSTQTVNESNES 295 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 P + VTV+QN+P P S +++ EE NYEI + + ++ ++ RL Sbjct: 296 SDRDPLAPVTVDQNLPTAQSSSSASPLSSNKSNRAEETINYEITKTTKSHVRESGQVRRL 355 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL--E 415 S+AV+V+ A Q + D + I +V +A G+++ RGD++ + +M F E Sbjct: 356 SVAVLVDGTYQLSKDAPPAYQPRSDQEIESIKALVRSAVGLDAVRGDSLEVINMRFWSPE 415 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL--RRLHNIDDAKKGE 473 + + + FM + + +V + +L+ L + L R + ++ E Sbjct: 416 DDIQKPDEL---FMGMTKDDLFRIAEMVVLGIVAVLIILLVIRPLIARAFEKAEMQEEDE 472 Query: 474 VGGKSILSPP---PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 + +L+ P + A TG + D +AL+++ D +R+ V S + Sbjct: 473 M--DRLLTDQAGMPAALAAPTGALAQD-LALEAAQADEELEQMIDINRVEGRVRASSLRK 529 Query: 531 LLHMIEINEERFAKILRKWARSE 553 + +++ + E ILR W E Sbjct: 530 VGEIVDKHPEEAVSILRNWLYQE 552 >gi|209963531|ref|YP_002296446.1| flagellar M-ring protein FliF [Rhodospirillum centenum SW] gi|209956997|gb|ACI97633.1| flagellar M-ring protein FliF [Rhodospirillum centenum SW] Length = 573 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 149/422 (35%), Positives = 242/422 (57%), Gaps = 19/422 (4%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 A++ LLQ ++ LG+ R+++LA+ ++ F ++ LY L+ ++ Sbjct: 22 AVVANLLQNLRA---LGQRRLMLLAAAGAGVLLAVALVAFGLSRAPMGLLYAGLDDAEAG 78 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 RI L + +++S G +I +P + + R+ LA QGLPS+ +GYELFD+ + G Sbjct: 79 RILTQLQSMKVPYQVSGTGGAILLPQDQIARTRMLLAQQGLPSAG-GAGYELFDEQGALG 137 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 LTSFMQ + + RALEGE+ARTIQ+++G+ +ARVH+ MPD +F A ASV++R + Sbjct: 138 LTSFMQRLNKARALEGELARTIQTLNGVKSARVHLSMPDGEAFAPGAAPAGASVVVRTVT 197 Query: 182 PSVYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240 + +S A AIRHLVAAAVP L G VTV+D++G +L A+ + G +L + ++ Sbjct: 198 GGLDRSQALAIRHLVAAAVPRLQPGAVTVMDASGVVLAADGGATD--GLALLHAEELRSA 255 Query: 241 IEMNINKALAAFL----GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 E + +A+ L G N R V AE+++ + +RE +DP+S+V RS + ++ + Sbjct: 256 TETRLARAIEEMLVPRFGPGNIRVRVAAEIDLGRETLREQTFDPNSRVLRSTQTVEERES 315 Query: 297 S---ETSQPESAVTVEQNMP-HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 S +T QP TVEQN+P +D + P E+ ++EE +NYEI++ D Sbjct: 316 SLDRDTDQP---TTVEQNLPLEAADAQAPQGSRSESA-REEETANYEISSILRERAQDAG 371 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 ++ RL++AVVVN + G+S Q + D L+ I +V A G + RRGD + + ++ Sbjct: 372 EIRRLAVAVVVNGSYVPGADGKSVYQPRSDEELSRIEHLVRTAIGFDDRRGDMVAVENLQ 431 Query: 413 FL 414 FL Sbjct: 432 FL 433 >gi|56384261|gb|AAV85779.1| FliF [Azospirillum brasilense] Length = 521 Score = 216 bits (550), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 162/526 (30%), Positives = 267/526 (50%), Gaps = 24/526 (4%) Query: 43 VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL 102 +++P + LY +L+ ++ I+ L EA + F + G+ I V + VG R+ +AA GL Sbjct: 4 LSTPEMELLYAELQPTEAAAIAKKLEEAKVPFTVDKTGTKIMVAAEQVGPTRMRMAAAGL 63 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162 PS S GYELFDK FG TSFMQ I +RALEGE+ART+Q+++G+ +ARVH+V+P Sbjct: 64 PSGGS-IGYELFDKGEGFGATSFMQNINHLRALEGEMARTVQTLNGVQSARVHLVLPKRE 122 Query: 163 SFRKIGARPTASVMIRAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLL-- 217 F + TAS+ I+ + P S E AI+HL+AA+VPNLD ++++D G LL Sbjct: 123 LFARQQNPATASIFIK-LRPGAQLSRENIQAIQHLIAASVPNLDPSRISIVDDKGTLLAR 181 Query: 218 -TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 T N+ +L + A + + I L +G R+ V A+L+ D + Sbjct: 182 GTGNDSADAMLASAEEKKVAYESRVARIIEDLLGRTVGYGKVRAEVSADLDFDRITTQSE 241 Query: 277 VYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQS 336 ++DP+S+V RS + +A S P S VTV+QN+P P S ++ EE Sbjct: 242 IFDPESQVVRSTQTVTEANESHDRDPLSPVTVDQNLPTAQSGNNAGPISQNKQNRSEETI 301 Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR----SADQGKIDSYLAEINKIV 392 NYEI+ + ++ ++ RLS+AV+V+ T L R +A Q + + L I +V Sbjct: 302 NYEISRTTKNHVRESGQVRRLSVAVLVDG---TYSLPRDGNPAAYQPRPEQELESIKALV 358 Query: 393 SAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452 +A G+++ RGDT+ + +M F + + + F+ + + +V + +L+ Sbjct: 359 RSAVGLDAVRGDTLEVINMRFWSPE-DDVQKPEELFLGMTKDDLFRIAEMVVLGIVAVLI 417 Query: 453 TFLGLHAL--RRLHNIDDAKKGEVGGKSIL---SPPPISSAVTTGLMPNDNIALDSSNQD 507 L + L R D ++ ++ +L S P + A TG + D +AL+++ D Sbjct: 418 ILLVIRPLITRAFEKADQQEEDDM--DRLLADQSGMPAALAAPTGALAQD-LALEAAQAD 474 Query: 508 IFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 +R+ V S ++ ++E + E ILR W E Sbjct: 475 EELEQMIDINRVEGRVRASSLRKVGEIVEKHPEEAVSILRNWLYQE 520 >gi|114765263|ref|ZP_01444395.1| flagellar M-ring protein [Pelagibaca bermudensis HTCC2601] gi|114542398|gb|EAU45426.1| flagellar M-ring protein [Roseovarius sp. HTCC2601] Length = 535 Score = 209 bits (533), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 151/472 (31%), Positives = 239/472 (50%), Gaps = 26/472 (5%) Query: 34 MLFMAARFF----VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSM 89 M+F A FF V +P Y LY L ++ R+ +L +A I R G+++SVP Sbjct: 1 MVF--AMFFGLSAVTTPDYVALYRDLSPAEAGRMVESLEQAGIRSRTDMAGTAVSVPGED 58 Query: 90 VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149 + +AR+ LA GLP+ + G+E+FD+ + G+ +FMQ + R RA+EGE+AR+IQ+I G+ Sbjct: 59 MARARMLLAGAGLPNDGT-PGWEIFDEASGLGMNTFMQRVNRARAMEGELARSIQTIDGV 117 Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209 AARVH+V+P+ F + RP+ASV++R + A AIR LVA+AVP+L VTV Sbjct: 118 EAARVHLVLPEREPFSRERPRPSASVIVRGSRQVGMRQARAIRSLVASAVPDLAPAQVTV 177 Query: 210 LDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 L +TG+ + + + E S I+ + I + L+A +G N R V +L + Sbjct: 178 LSATGETILSEDGEAGSEASLQSARAQIEDRLGQRIAQILSARVGAGNARVQVSVDLTTE 237 Query: 270 TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT 329 Q +RE YDPD +V RS +++ R + + V V ++P VP + Sbjct: 238 RQVVREQTYDPDQRVVRSTE-TREETREDQTAAGGEVGVADDIPAALAADVPG-NNRNTA 295 Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID------S 383 + E NYEI S T + +E++S+AV+VN + D G +D Sbjct: 296 NSTNEIVNYEIGGTSSETVREPGDIEKVSVAVLVNG------IYNVQDGGAVDYEERSQE 349 Query: 384 YLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINAL 443 L + +V +A G + RGD++ + S+ F++ + V SF L+ + T++ + Sbjct: 350 ELQRLEALVQSAIGFDEARGDSVEVVSLRFMDYSMDVGEPVSRSFAQTLTENTGTILRGV 409 Query: 444 VFLVGTLLVTFLGLH-ALRRLHNIDDAKKGEVGGKSILSPPPISS--AVTTG 492 L V LG+ AL R+ D E G + PP + A TTG Sbjct: 410 FALALVAAVLALGVRPALNRV--FDQPAIAEGGSADLPGLPPSGNLPATTTG 459 >gi|209964124|ref|YP_002297039.1| flagellar MS-ring protein [Rhodospirillum centenum SW] gi|209957590|gb|ACI98226.1| flagellar M-ring protein FliF [Rhodospirillum centenum SW] Length = 556 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 160/554 (28%), Positives = 264/554 (47%), Gaps = 17/554 (3%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 F ++ +LG R+ + LV + LF+ +SP LY L +D I L + Sbjct: 9 FLQTLRNLGAVRLAAIGGATLVIVGLFVYMMSQWSSPGMSLLYSDLTPADGGAIVQQLEQ 68 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 I ++ S +G+ I VPS VG+ R+ +A QGLPS N GYELF++ G TSFMQ I Sbjct: 69 QQIPYKASPDGTRIEVPSDQVGRVRMLMAQQGLPSGG-NVGYELFNQPEGLGTTSFMQNI 127 Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE 189 ++RALEGE++RT+Q++ + AAR+H+V+P F + TASV +R + P E Sbjct: 128 QQLRALEGELSRTVQTLQPVQAARIHLVLPKRELFSRQNQTATASVFVR-LRPGASLGKE 186 Query: 190 ---AIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAIQHEIEM 243 AI+ LVAAAVP L+ V ++D G +L ++ + +L + A + + Sbjct: 187 QVLAIQTLVAAAVPQLEPDMVAIVDDKGNVLARGMGSDSQEAMLATAEEKKLAYEQRLTQ 246 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 + L+ +G R+ V AEL+ D +YDPDS+V RS + + + Sbjct: 247 TVEDLLSRTVGFGRVRAQVSAELDFDRITTNSEIYDPDSQVVRSTQTVNEQSEDQNRDGI 306 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 VTV N+P S T + EE NYEIN + ++ RLS+AV+V Sbjct: 307 DPVTVANNLPTADATNTASGLSSSKTSRAEESINYEINRTVKVHERETGQIRRLSVAVLV 366 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF-LENQLFNSG 422 + G S Q + ++ L ++ ++V +A G ++ RGDT+ + +M F + L G Sbjct: 367 DGTYAAAEDGTSTYQPRPEAELDQLRRLVESAIGFDAARGDTVEVVNMRFATPDDLAGLG 426 Query: 423 TVQVSFM---DILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + + D+ V+ + LV L++ L AL R ++D GG + Sbjct: 427 EETIFGLPKEDVFRIAQTIVLAIVAILVILLVIKPLVARALDRTPQLEDEPDLLAGGDGV 486 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 P + G + + +AL+++ + +R++ V S ++ ++E + Sbjct: 487 ----PQLAGPGGGALARE-LALEAAQANEELEQMIDINRVDGRVRASSLRKVGEIVEKHP 541 Query: 540 ERFAKILRKWARSE 553 E I+R W E Sbjct: 542 EEAVSIIRNWLYQE 555 >gi|17988495|ref|NP_541128.1| flagellar M-ring protein FLIF [Brucella melitensis bv. 1 str. 16M] gi|265998972|ref|ZP_05464502.2| flagellar M-ring protein FliF [Brucella melitensis bv. 2 str. 63/9] gi|17984286|gb|AAL53392.1| flagellar m-ring protein flif [Brucella melitensis bv. 1 str. 16M] gi|263091454|gb|EEZ15990.1| flagellar M-ring protein FliF [Brucella melitensis bv. 2 str. 63/9] gi|326554600|gb|ADZ89239.1| flagellar MS-ring protein [Brucella melitensis M5-90] Length = 242 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 112/218 (51%), Positives = 147/218 (67%), Gaps = 4/218 (1%) Query: 4 LDQLLQFFKSGT--SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 QL++ K GT LG +++ L V + + ++ P Y+ LYV L DVN Sbjct: 10 FQQLIEQLK-GTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 68 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 R+ +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S G Sbjct: 69 RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 127 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 128 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 187 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 +SA++IR LVAAAVP+LD VTVLD+ G LL + Sbjct: 188 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLAS 225 >gi|326411311|gb|ADZ68375.1| flagellar MS-ring protein [Brucella melitensis M28] Length = 239 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 112/218 (51%), Positives = 147/218 (67%), Gaps = 4/218 (1%) Query: 4 LDQLLQFFKSGT--SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 QL++ K GT LG +++ L V + + ++ P Y+ LYV L DVN Sbjct: 7 FQQLIEQLK-GTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 65 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 R+ +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S G Sbjct: 66 RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 124 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 125 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 184 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 +SA++IR LVAAAVP+LD VTVLD+ G LL + Sbjct: 185 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLAS 222 >gi|256042874|ref|ZP_05445820.1| flagellar M-ring protein FLIF [Brucella melitensis bv. 1 str. Rev.1] gi|256112169|ref|ZP_05453090.1| flagellar M-ring protein FLIF [Brucella melitensis bv. 3 str. Ether] Length = 237 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 112/218 (51%), Positives = 147/218 (67%), Gaps = 4/218 (1%) Query: 4 LDQLLQFFKSGT--SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 QL++ K GT LG +++ L V + + ++ P Y+ LYV L DVN Sbjct: 5 FQQLIEQLK-GTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 R+ +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S G Sbjct: 64 RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 122 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 123 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 182 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 +SA++IR LVAAAVP+LD VTVLD+ G LL + Sbjct: 183 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLAS 220 >gi|83591884|ref|YP_425636.1| flagellar MS-ring protein [Rhodospirillum rubrum ATCC 11170] gi|83574798|gb|ABC21349.1| Flagellar FliF M-ring protein [Rhodospirillum rubrum ATCC 11170] Length = 551 Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 160/570 (28%), Positives = 274/570 (48%), Gaps = 49/570 (8%) Query: 10 FFKSGTSLGRTRILILASVI--LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 F ++ +LG R+ LA V L+ ++++A+R S + LY L +D +I L Sbjct: 4 FVQTMRNLGPVRLAALAGVAIALIGFVIYVASRLSGTS--MELLYGDLAPADAKQIIAQL 61 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 E NI ++++++G S+ VPS V K R+ +A LPS ++ GYE+FD ++ G T F Q Sbjct: 62 EERNIPYQMANDGRSVLVPSDQVLKLRVQMAESALPSGAT-VGYEIFDSASALGSTQFTQ 120 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI----RAINPS 183 I VRALEGE+ART+++I G+ ARVH+V+P F + P+ASV++ R + P Sbjct: 121 NINMVRALEGELARTVRTIQGVEGARVHLVLPKREPFTRDQVAPSASVVLLMKGRRLQP- 179 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHEI 241 + A+++LVAAAVP + G V+++D G LLT E L + +A + + Sbjct: 180 --EQVVAVQNLVAAAVPGMKPGQVSIIDERGTLLTRGMGEEGALIAQNQDELRKAEERRL 237 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 +I + L +GV R+ VVA+++ + +DP+ +V RS + +S S Sbjct: 238 AQSIEQLLERTIGVGKVRAEVVADMDFNRIVTSRESFDPNGQVVRSTTTVDEQNKS--SD 295 Query: 302 PESAVTVEQNMPH---VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 S V+V+QN+P + P ++ EN + EE NYEI + ++RLS Sbjct: 296 AVSNVSVQQNLPEAQFAGNGGAPTSQTSEN--RTEETVNYEITKIVTNEVKEAGVVKRLS 353 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 +AV+V+ T G + Q + D + +I +V +A G + RGD I + +M F++ Sbjct: 354 VAVMVDGTSTTNDAGVTTWQPRSDDEMQKITSLVRSAMGYDQARGDQIEVVNMQFIDPGA 413 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL--RRLHNIDDAKKGEVGG 476 F+ + L V +L+ L + L R N+ + GG Sbjct: 414 LFDDAAAWEFLGFTKAEVMKMAEGLGVAVVAILIILLVVRPLVQRAFENLPSG--ADQGG 471 Query: 477 KSILSPP---------PISSAVTTGL--MPNDNIALDSSNQ--DIFSHSRNLQSRINSYV 523 +L+ P ++ G+ MP++ +D + + DI ++ V Sbjct: 472 AGLLTAEMQSHPQLTGPGGGSIPAGMLGMPDE---MDDAEELIDI--------DKVEGRV 520 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSE 553 S ++ +++ + E I+R W E Sbjct: 521 KASSLRKIGEIVDKHPEEALSIIRNWLYQE 550 >gi|83955113|ref|ZP_00963769.1| flagellar FliF M-ring protein [Sulfitobacter sp. NAS-14.1] gi|83840442|gb|EAP79615.1| flagellar FliF M-ring protein [Sulfitobacter sp. NAS-14.1] Length = 564 Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 136/451 (30%), Positives = 231/451 (51%), Gaps = 11/451 (2%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 SLG+ ++++L + ++L + V P Y LY L ++ N I L+ A + Sbjct: 10 SLGKNKLMMLGGAGIGVVLLMILGIGAVTRPDYAPLYSNLSITSANSIEATLANAGFNAM 69 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135 +S++G+SISVP +AR+ LA G+P + G+ELFD+ + + SF+Q+I ++RA+ Sbjct: 70 VSEDGTSISVPRGDAVRARMVLAETGMPIDG-DPGWELFDESSGLAMNSFLQKINKMRAM 128 Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRH 193 EGE+AR+IQ++ GI +ARVH+V+PD F + P AS+++R + K A A+ + Sbjct: 129 EGELARSIQTLDGISSARVHLVLPDREPFSRDAPAPRASIILRPESGRAVTRKQAVAVSN 188 Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFL 253 LVA+AV +LD+ VTVL ++G+ + A + + G S I+ + I L A + Sbjct: 189 LVASAVADLDISRVTVLSASGETILAEGPDGSSQGGVQSAKAGIEDRLSQEIQNILTARV 248 Query: 254 GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA-VTVEQNM 312 G N R V EL + I E YDPD +V RS + Q T E+ V VE N+ Sbjct: 249 GAGNARVHVNVELTTQREVIVEQTYDPDQQVVRSTETKSEDQ---TGTKEAGNVGVENNI 305 Query: 313 PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372 P S ++ +E YEI + + R+S+AV+VN + V Sbjct: 306 PAALADGNGAGTSTRRSE-ADEIVQYEIGNTRREIVREAGDVRRMSVAVLVNG--IYNVD 362 Query: 373 GRSADQG-KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDI 431 G + LA + ++V A G ++ RGD++++ SM F++ + + S D Sbjct: 363 GSDVIYAERTPEELARLGELVKTAVGFDTTRGDSVSVDSMRFMDYSMDLGDPIDKSIGDE 422 Query: 432 LSRHFATVINALVFLVGTLLVTFLGLHALRR 462 L+ + +++ ++ L+ L+ G+ + R Sbjct: 423 LTDNVVSIVRGVLALLVVGLILVFGVRPMLR 453 >gi|254470345|ref|ZP_05083749.1| flagellar M-ring protein FliF [Pseudovibrio sp. JE062] gi|211960656|gb|EEA95852.1| flagellar M-ring protein FliF [Pseudovibrio sp. JE062] Length = 528 Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 154/535 (28%), Positives = 266/535 (49%), Gaps = 25/535 (4%) Query: 27 SVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVP 86 + +L+ + F+ R +P L+ L + D I + + + + NG S+ VP Sbjct: 2 AALLIGLFSFIIVR--ATAPQMVPLFTDLTLEDAAAIVSQVESQGVSYELGVNGRSVLVP 59 Query: 87 SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146 V + R+ LA GLPS GYE+FDK ++ G TSF+Q + R RALEGE++RTI+SI Sbjct: 60 QENVHRLRMTLAEAGLPSGG-GVGYEIFDKTDTLGATSFVQNLNRTRALEGELSRTIRSI 118 Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGD 206 I +ARVH+V+P+ F++ PTAS+ I+ AI+HLVA AV L+ Sbjct: 119 GRIASARVHLVIPEKQLFQRDREPPTASIAIKVQGSLTNGQIRAIQHLVATAVEGLEPSY 178 Query: 207 VTVLDSTGKLLTANEMERNILGKSLSIVQ---AIQHEIEMNINKALAAFLGVDNFRSAVV 263 V+++D G LL + ++ L S+ + ++ + + + L +G R V Sbjct: 179 VSIVDERGTLLASGTGDKEGLAGGSSLDERRLTMESRLRQQVEEILNNVVGTGRARVRVA 238 Query: 264 AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLP 323 AE+N + + + ++DPD +V RS + SK+ S T+ E V+V +P+ +D Sbjct: 239 AEINYNRKTETQELFDPDGQVLRSSQ-SKEENASSTNG-EDTVSVGNQLPN-ADAAGSSA 295 Query: 324 RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS 383 S ++++ EE NYEI+ ++ ++ LERLS+AV+V+ T G Q + Sbjct: 296 GSKDSSNVSEEILNYEISKSTVTEIYEAGGLERLSVAVLVDGTYTTSEDGTQTYQPRSRE 355 Query: 384 YLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN-----SGTVQVSFMDILSRHFAT 438 L +I +V A G + RGDT+ + +M F+E L + G + DI+ FA Sbjct: 356 ELEQIATLVRTAVGFSKHRGDTVEVVNMRFVEAPLSDFADGEGGLFDFTRADIM--KFAE 413 Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG--EVGGKSILSPPPISSAVTTGLMPN 496 + ++F++ LL+ F ++R+ DD + E GG +L P + VT Sbjct: 414 L--GVLFVITVLLLIFAVSPLMKRILAKDDEPEAAIEGGGVQML---PDGTLVTESPAQV 468 Query: 497 DNIA--LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549 + I +++ +I + +++ + + + S ++ MIE + I+R W Sbjct: 469 EGIVGEMEAVPTEIPTAEWIEDAKMQAALHQSSIKQISEMIEDSPSEAVNIVRGW 523 >gi|83309602|ref|YP_419866.1| flagellar MS-ring protein [Magnetospirillum magneticum AMB-1] gi|82944443|dbj|BAE49307.1| Flagellar biosynthesis/type III secretory pathway lipoprotein [Magnetospirillum magneticum AMB-1] Length = 574 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 139/458 (30%), Positives = 230/458 (50%), Gaps = 40/458 (8%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 D + F + LG R+ +A V + + F+ V +P + LY L++ D +I Sbjct: 20 DDVNAFLQMLRGLGPMRLAAIAGVGVSILGFFIYLMSRVAAPQMELLYGDLDLGDSKQII 79 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L+ I + + +G+ + VP R+ +A Q LP+ +GYELFDK ++ G TS Sbjct: 80 EKLTADKIPYELRKDGTEVWVPKDRKLDLRVRMAEQALPAGGRMAGYELFDKQDALGSTS 139 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 F Q IT VRALEGE+++TI+SI + AARVH+V+P +F + P+ASV+I+ Sbjct: 140 FQQNITMVRALEGELSKTIRSIDRVKAARVHLVLPKREAFSRDTQEPSASVIIKMNGAQR 199 Query: 185 YKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLL-------------TANEMERNILGK 229 + AI+HL+AAAVP + ++++D G LL TA EM+ K Sbjct: 200 LDKGQVSAIQHLIAAAVPKMKPSRISIVDDKGTLLAKGFENSKEYQAQTAEEMKVKTEAK 259 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 +V+ I+ +E + LG R+ V +++M E +DP++KV RS Sbjct: 260 ---LVKTIEDLLERS--------LGPGRVRAEVTVDMDMSQATTTEETFDPETKVVRSQV 308 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 + ++S+ ++P + VTV+QN+P + R+ +K +E NYEI+ K+ +T Sbjct: 309 TVNEGEQSQDAEP-TPVTVQQNLPDPNASSSGNIRTSTKINKNQETVNYEISRKTKSTVR 367 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY-------LAEINKIVSAATGINSRR 402 + ++ ++S AV+V+ V +SAD GK SY L++I +V +A G R Sbjct: 368 EMGEIRKVSAAVIVDG-----VREQSAD-GKQTSYRERTAEELSQIEALVKSAIGYTKDR 421 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440 D + + SM F + + F+ + R F I Sbjct: 422 DDQVKVASMPFYKGEELLQAEEPGEFIFGMRRDFVEKI 459 >gi|89068713|ref|ZP_01156099.1| putative flagellar M-ring protein [Oceanicola granulosus HTCC2516] gi|89045676|gb|EAR51738.1| putative flagellar M-ring protein [Oceanicola granulosus HTCC2516] Length = 562 Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 130/405 (32%), Positives = 218/405 (53%), Gaps = 9/405 (2%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 SLG+ R++ LA+ + + V +P Y LY L S ++ L +A Sbjct: 10 SLGQRRLIALAATGIGLTAALLLGVGAVLAPTYAPLYSGLSPSGAAQVVGTLEQAGFRVD 69 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135 +S +G+ +SVP S + +AR+ LA QGLP G+ELFD G+ SFMQ I R+RAL Sbjct: 70 VSADGTMVSVPDSDLARARMALADQGLPDEGV-PGWELFDNSTGLGMNSFMQRINRLRAL 128 Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRH 193 EGE+AR+IQ+I + +ARVH+V+P+ +F + P+ASV++RA S A AIR+ Sbjct: 129 EGELARSIQTIDAVDSARVHLVLPEREAFSRARPEPSASVIVRASGRSEIGRNQARAIRN 188 Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFL 253 LVAAAVP+L VTVL ++G+ + A++ E S+ +++ + +I++ L+A + Sbjct: 189 LVAAAVPDLAPSRVTVLSASGETILADDGEPGSDVSLQSVRASLEDRMSRSIDQILSARV 248 Query: 254 GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP 313 G N R V +L + Q I + YDP+ +V RS +++ +T + V N+P Sbjct: 249 GAGNARVQVSVDLTTERQVILQQSYDPNQRVVRSTE-TRNETVEDTQAGQDQVDAAGNLP 307 Query: 314 H-VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK--GRLTE 370 + + N +E NYEI + + +E++S+AV+VN RL Sbjct: 308 EALGGEAEGSTGARSNRTAADEIVNYEIGSTRSEVIREPGDVEKISVAVLVNGIYNRLPN 367 Query: 371 VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 G + + + + ++V +A G +++RGDT+++ S+ F++ Sbjct: 368 --GDVEYEERPPEEIERLTRLVESAVGYDAQRGDTVSVESLRFMD 410 >gi|83944186|ref|ZP_00956642.1| flagellar M-ring protein [Sulfitobacter sp. EE-36] gi|83845053|gb|EAP82934.1| flagellar M-ring protein [Sulfitobacter sp. EE-36] Length = 548 Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 134/444 (30%), Positives = 225/444 (50%), Gaps = 11/444 (2%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 ++L + ++L + V P Y LY L ++ N I L+ A + +S++G+S Sbjct: 1 MMLGGAGIGVVLLMILGIGAVTRPDYAPLYSNLSITSANSIEATLANAGFNAMVSEDGTS 60 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 ISVP +AR+ LA G+P + G+ELFD+ + + SF+Q+I ++RA+EGE+AR+ Sbjct: 61 ISVPRGDAVRARMVLAETGMPIDG-DPGWELFDESSGLAMNSFLQKINKMRAMEGELARS 119 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVP 200 IQ++ GI +ARVH+V+PD F + P AS+++R + K A A+ +LVA+AV Sbjct: 120 IQTLDGISSARVHLVLPDREPFSRDAPAPRASIILRPESGRAVTRKQAVAVSNLVASAVA 179 Query: 201 NLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRS 260 +LD+ VTVL ++G+ + A + + G S I+ + I L A +G N R Sbjct: 180 DLDISRVTVLSASGETILAEGPDGSSQGGVQSAKAGIEDRLSQEIQNILTARVGAGNARV 239 Query: 261 AVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA-VTVEQNMPHVSDRK 319 V EL + I E YDPD +V RS + Q T E+ V VE N+P Sbjct: 240 HVNVELTTQREVIVEQTYDPDQQVVRSTETKSEDQ---TGTKEAGNVGVENNIPAALADG 296 Query: 320 VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQG 379 S ++ +E YEI + + R+S+AV+VN + V G Sbjct: 297 NGAGTSTRRSE-ADEIVQYEIGNTRREIVREAGDVRRMSVAVLVNG--IYNVDGSDVIYA 353 Query: 380 -KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFAT 438 + LA + ++V A G ++ RGD++++ SM F++ + + S D LS + + Sbjct: 354 ERTPEELARLGELVKTAVGFDTTRGDSVSVDSMRFMDYSMDLGDPIDKSIGDELSENVVS 413 Query: 439 VINALVFLVGTLLVTFLGLHALRR 462 ++ ++ L+ L+ G+ + R Sbjct: 414 IVRGVLALLVVGLILVFGVRPMLR 437 >gi|46201261|ref|ZP_00055409.2| COG1766: Flagellar biosynthesis/type III secretory pathway lipoprotein [Magnetospirillum magnetotacticum MS-1] Length = 560 Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 133/447 (29%), Positives = 227/447 (50%), Gaps = 18/447 (4%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 D + F + LG R+ +A V + + F+ V +P + LY L++ D +I Sbjct: 6 DDVNAFLQMLRGLGPMRLAAIAGVGVSILGFFIYLMSRVAAPQMELLYGDLDLGDSKQII 65 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L+ I + + +G+ + VP R+ +A Q LP+ +GYELFDK ++ G TS Sbjct: 66 EKLTADKIPYELRKDGTEVWVPKDRKLDLRVRMAEQALPAGGRMAGYELFDKQDALGSTS 125 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 F Q IT VRALEGE+++TI+SI + AARVH+V+P +F + P+ASV+I+ Sbjct: 126 FQQNITMVRALEGELSKTIRSIDKVKAARVHLVLPKREAFSRDTQEPSASVIIKMNGSQR 185 Query: 185 YKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQA-IQHE 240 + AI+HL+AAAVP + ++++D G LL E + ++ ++ + + Sbjct: 186 LDKGQVSAIQHLIAAAVPKMKPSRISIVDDKGTLLAKGFENSKEYQAQTAEDMKVKTEAK 245 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 + I L LG R+ V ++++ E +DP++KV RS + ++S+ + Sbjct: 246 LVKTIEDLLERSLGPGRVRAEVTVDMDLSQATTTEETFDPETKVVRSQVTVNEGEQSQDA 305 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 +P + VTV+QN+P + R+ +K +E NYEI+ K+ +T + ++ ++S A Sbjct: 306 EP-TPVTVQQNLPDPNASSGGNIRTSTKINKNQETVNYEISRKTKSTVREMGEIRKVSAA 364 Query: 361 VVVNKGRLTEVLGRSADQGKIDSY-------LAEINKIVSAATGINSRRGDTITITSMDF 413 V+V+ V +SAD GK SY L++I +V +A G R D + + SM F Sbjct: 365 VIVDG-----VREQSAD-GKQTSYRDRTAEELSQIEALVKSAIGYTKDRDDQVKVASMPF 418 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVI 440 + + F+ + R F I Sbjct: 419 YKGEELLQAEEPGEFIFGMRRDFVEKI 445 >gi|254294565|ref|YP_003060588.1| flagellar M-ring protein FliF [Hirschia baltica ATCC 49814] gi|254043096|gb|ACT59891.1| flagellar M-ring protein FliF [Hirschia baltica ATCC 49814] Length = 568 Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 163/570 (28%), Positives = 285/570 (50%), Gaps = 41/570 (7%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDN--LYVKLEVSDVNRI 63 + + K T+ G+ RI+ + ++V ++ F + D LY L++++ I Sbjct: 3 ETVSIIKKITNGGQMRII---AALMVVALVGAGLGFIMLRGGADEALLYSGLDLTESAEI 59 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 S L +ANI + I +G+SI V V AR+ L+ +GLP+ + GYE+FDK + G T Sbjct: 60 SGRLDQANISYTIRGDGASIFVNRDQVLDARMMLSEEGLPTRGA-MGYEIFDKSEALGTT 118 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI----RA 179 SF+Q I RVRALEGE+ARTI S+ I +RVH+V+P+ F + P+ASV+I R Sbjct: 119 SFVQNINRVRALEGELARTISSLDNIRGSRVHLVLPERRLFERGTQTPSASVVISVAGRG 178 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQ-A 236 + PS + AIR+L+A +VPNL++ +T+LD G+LL A E G S Q Sbjct: 179 MLPSQVR---AIRNLIAGSVPNLEVNRITLLDDKGRLLAAGAENSENGFSGGSADERQTG 235 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 I+ +I + + + G R V A+++ + ++DP+ +V RS ++D+ R Sbjct: 236 IEDQIRNKVLSVVESVTGPGAARVQVAADIDFNRITQSSEIFDPEGRVIRSSTTTEDSSR 295 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPL-PRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 +++P AVT E N+P + P P S T+ +E +NYEI+ + + ++ Sbjct: 296 ESSTEPAGAVTAENNIPAGTAADGPADPTSQAETNHLQETTNYEISKTTKTEITEGGRIR 355 Query: 356 RLSIAVVVNKGRLTEVLGRSADQG------KIDSYLAEINKIVSAATGINSRRGDTITIT 409 ++S+AV ++ R+ AD+ + +A I +V +A G + RGD + + Sbjct: 356 KISVAVALDDVRVP-----GADETEATFAPRTPEEIANIKTLVRSAVGYDEARGDIVEVV 410 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFL-VGTLLVTFLGLHALRRLHNIDD 468 ++ F+ + + ++ M L+++ I+ L L VG +L+ L L + Sbjct: 411 NVSFMRPESSVNLAIEDPGMLGLTKNDIMRISELAALFVGAVLLIIFVLRPLVKGLMSPS 470 Query: 469 AKKGE---VGGKSILSPPPISSAVTTGLMPNDNIAL----DSSNQDIFSHSR-NLQ-SRI 519 A+ G+ VG + P S + ++N+ L D N I + L +RI Sbjct: 471 AESGDSFYVGEAKL---PGGSGNAAQKVTLSENLVLPGSGDGGNGQITEDDQFGLDVARI 527 Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKW 549 + V+ S ++ ++E + + +I+R W Sbjct: 528 SGKVNASSVKKISEVVESHPDESIQIIRAW 557 >gi|188583761|ref|YP_001927206.1| flagellar MS-ring protein [Methylobacterium populi BJ001] gi|179347259|gb|ACB82671.1| flagellar M-ring protein FliF [Methylobacterium populi BJ001] Length = 538 Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 149/542 (27%), Positives = 262/542 (48%), Gaps = 23/542 (4%) Query: 15 TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF 74 T LG RI +A+V L + F V+ P L+ L + D + + L I + Sbjct: 9 TKLGPARIAAMAAVTLTLVGFFAFVILRVSRPDMGVLFSDLSMQDSSAVIRELDARGIAY 68 Query: 75 RISDN-GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 G ++ P + + K R+ A +GLP+ GYE+FDK ++F TSF+Q + +R Sbjct: 69 ETKGELGQTVLAPRADLAKLRMDFAGKGLPAQG-GIGYEIFDKGDAFSSTSFVQNVNHLR 127 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRH 193 A+EGE+AR+I++I + AARVH+V+P+ F + P+A+++++ + AIRH Sbjct: 128 AMEGELARSIRAIGRVQAARVHLVIPERRLFERDREAPSAAIVVKLMGDLDPSQVRAIRH 187 Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKALAA 251 L A+AV L V+++D G+LL A E G I+ + I + +A Sbjct: 188 LAASAVEGLKPERVSIVDERGRLLADGARGAEAEGAGALEERQAGIERRMRAQIEEIVAG 247 Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311 +G R V AEL+++ + R +DP+S+V RS + ++ S T E V+V Sbjct: 248 IVGQGRARVQVTAELDLNRVESRSESFDPESRVVRSTQTR--SENSLTGGAEGQVSVGNE 305 Query: 312 MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV 371 +P + + P P+ +++ K EE +NYEI+ + T + +L+RLS+AV+V+ Sbjct: 306 LPGANQNQPP-PQQKDSSQKNEEVTNYEISRVTKVETLEGGRLKRLSVAVLVDGVYAPGA 364 Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN----QLFNSGTVQVS 427 G++A Q + D+ +A I +V A G + RGD + + ++ F E + G +Q S Sbjct: 365 DGKAAYQPRSDAEIARIAALVRTAVGYDKARGDQVEVVNLRFAETPAAAEFAEPGLIQ-S 423 Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISS 487 F+ ++ V + TL+V + L R DA + G ++ Sbjct: 424 FLSPSKEDVMRLVELAVLSLLTLIVLMAVVRPLLRRVLESDAPVAALAGPALALAGAGGE 483 Query: 488 AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILR 547 T IA+ ++ + F S ++IN + ++ R++ M+ + ++LR Sbjct: 484 GPT-------EIAVRENSTNKFLES----AKINGQIQAETVERVVDMVRASPTETVEVLR 532 Query: 548 KW 549 W Sbjct: 533 NW 534 >gi|92116309|ref|YP_576038.1| flagellar MS-ring protein [Nitrobacter hamburgensis X14] gi|91799203|gb|ABE61578.1| flagellar M-ring protein FliF [Nitrobacter hamburgensis X14] Length = 540 Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 155/556 (27%), Positives = 264/556 (47%), Gaps = 37/556 (6%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 LL F K LG +R++ + +V I F V +P L+ L V D + I Sbjct: 4 LLAFLKG---LGPSRLMAMVAVTTALIGFFAFVIMRVTAPQMTTLFTDLSVEDSSGIIKD 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L I + + ++G+ I VP V + R+ LA GLP GYE+FDK ++ G TSF+ Sbjct: 61 LERQAIPYELRNDGAVIMVPKDKVTRLRMKLAEAGLPKGG-GVGYEIFDKSDALGTTSFV 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 Q I R+RALEGE++RTI++I I ARVH+V+PD F + +P+AS+++R + Sbjct: 120 QNINRLRALEGELSRTIKAIDRIQDARVHLVLPDRPLFSREAPQPSASIVLRVRGGLEPQ 179 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQAIQHEIEM 243 AIRHLVA+AV L V+++D TG+LL +A + + + + A + + Sbjct: 180 QIRAIRHLVASAVNGLKPQRVSIVDETGQLLADGSATDADGTTGDERRT---AFEKRMRN 236 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 + +++ +G R + A+ + + +DP+ +V RS + +++ S T+ Sbjct: 237 QVEAIVSSVVGSGRARVQLSADFDYNKITQTSDKFDPEGRVLRSSQTREES--SVTADNN 294 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 VTV +P P P + + + K EE +NYEI+ + + ++ R+S+AV+V Sbjct: 295 GQVTVNNELPGNQQSDNPSP-ARDQSKKSEETNNYEISRTTKTEVTEAGRVNRISVAVLV 353 Query: 364 NKGRLTEVLGRSADQGKI------DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 + G T+ DQG++ L I +V +A G + +RGD + + ++ F E Sbjct: 354 D-GTYTK-----NDQGQMVYAERSKEQLDRIATLVRSAIGFDQKRGDQVEVVNLKFAEPP 407 Query: 418 L---FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL-RRLHNIDDAKKGE 473 + M + VI+ V L+ L+VTF+ + L RR+ + A G Sbjct: 408 AAVPLAEPAGLLGMMALTKDDVMYVIDLAVMLLLGLVVTFMVIRPLVRRILASEPAPAGA 467 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 + P P + G + + S+ + +++ V QS R+ Sbjct: 468 APSQ---LPAPADATAQAGATGQNLVPGGSATAQLIDV-----AQVQGQVHAQSVHRVGE 519 Query: 534 MIEINEERFAKILRKW 549 + E N A I+R+W Sbjct: 520 LAERNPAETASIIRQW 535 >gi|163744330|ref|ZP_02151690.1| flagellar M-ring protein FliF [Oceanibulbus indolifex HEL-45] gi|161381148|gb|EDQ05557.1| flagellar M-ring protein FliF [Oceanibulbus indolifex HEL-45] Length = 567 Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 140/467 (29%), Positives = 246/467 (52%), Gaps = 21/467 (4%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVIL-VPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 ++Q+++ K LG R+ +L + L + +F+ AR + +P Y +Y +L ++ Sbjct: 1 MNQIVENLKD---LGPKRLALLGGIGLAITAAVFIGARTIL-APTYVPVYSQLSPGTASQ 56 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + L +A + +S NG +ISV + + +AR+ LA GLP G+E+FD ++ G+ Sbjct: 57 MMQTLEQAGLTVDLSRNGDTISVAENDIARARMALADAGLPGEGV-PGWEIFDNMSGMGM 115 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-IN 181 SFMQ++ R+RALEGE+AR+IQ+ISGI AARVH+V+P+ +F + A + SV++R+ N Sbjct: 116 NSFMQKVNRLRALEGELARSIQTISGIKAARVHLVLPERAAFSRSRAEASGSVIVRSQAN 175 Query: 182 PSVYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQA---- 236 S+ +S A+AI+ LVA+AV +L+ +VTVL ++G+ + A ++ G S +Q Sbjct: 176 ASMTRSQAQAIQALVASAVADLEAQNVTVLSASGETILA----KDDGGSSDFSLQGQRSM 231 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 I+ ++ + L A +G N R V +L + + +DP +V RSI ++ Sbjct: 232 IEEQLAQKVESILNARVGPGNARVRVSVDLTTEREVRVSRTFDPAQQVARSIE-TRVRNS 290 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 +ET V V N+P + +E NYEI + + +ER Sbjct: 291 NETDPATGTVDVANNIPDELRDDAGGGAGQSTRSENDEIINYEIGSVQSEMVREPGDIER 350 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL-- 414 +S+AV+VN T G + + + ++++VS A G + RGD + + S+ FL Sbjct: 351 ISVAVLVNGSYGTLPDGSEGYIERSEEEMQRLSQLVSTAIGFDQNRGDQVQVDSLQFLDF 410 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461 +++ N G + +L+ + T++ +L L ++ LG LR Sbjct: 411 DSEFSNPGGRGLGA--VLADNAMTILRSLFALALVAIIMLLGARPLR 455 >gi|332296504|ref|YP_004438427.1| flagellar M-ring protein FliF [Thermodesulfobium narugense DSM 14796] gi|332179607|gb|AEE15296.1| flagellar M-ring protein FliF [Thermodesulfobium narugense DSM 14796] Length = 515 Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 133/402 (33%), Positives = 211/402 (52%), Gaps = 29/402 (7%) Query: 21 RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80 R L+L+ V LV +LF+ F+ P L+ L SD I L E I + + D+G Sbjct: 23 RFLLLSGVSLV-FILFVFGSLFLFKPQMAPLFTHLSSSDGAAIVAKLKEQKIPYELKDSG 81 Query: 81 SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140 ++I VP V + R+ LAAQGLP S G+E+FDK N F T F Q + VRAL+GE+A Sbjct: 82 TTILVPKDKVYELRLSLAAQGLPEGS-GVGFEIFDKNNLF-TTDFTQRVDYVRALQGELA 139 Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS---VYKSAEAIRHLVAA 197 RTI I+G+ ARVHIV+P G F +ASVM+ + P K EAI LV+ Sbjct: 140 RTISQINGVEGARVHIVLPKTGVFVSQDIPASASVMLN-LKPGQSISEKETEAIAFLVSR 198 Query: 198 AVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255 AV L +VT++D+ G+LL+A N + + + I + + E++ I L LG Sbjct: 199 AVEGLKPENVTIMDTRGELLSADLNFNKSGLSQREFDIKRKYESEVQRKIQTMLDTMLGP 258 Query: 256 DNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQRSETSQPES-AVTVEQN 311 V AELN+ + ++++I Y P + + S +++ D +S+ + P++ + TV Q Sbjct: 259 GKSVVRVSAELNLASSEVKKITYSPVVGQNGIVISSKVTTDTSKSQNTTPQTPSATVPQG 318 Query: 312 MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV 371 +P + P P S ++ K EE +NY++N + + + ++RL+++V+V+ T Sbjct: 319 IPSY---QTPAPTSSSSSRKTEEITNYDVNKQEEMIKNPSGDIKRLTVSVIVDGTPQT-- 373 Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 L + VS A GI +RGD++ + +M F Sbjct: 374 -----------VNLQALTAAVSNAAGILPQRGDSVDVQAMPF 404 >gi|218532348|ref|YP_002423164.1| flagellar MS-ring protein [Methylobacterium chloromethanicum CM4] gi|218524651|gb|ACK85236.1| flagellar M-ring protein FliF [Methylobacterium chloromethanicum CM4] Length = 540 Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 126/405 (31%), Positives = 213/405 (52%), Gaps = 7/405 (1%) Query: 15 TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF 74 T LG RI +A+V L + F V+ P L+ L + D + + L I + Sbjct: 9 TKLGPARIAAMAAVTLTLVGFFAFVILRVSRPDMGVLFSDLSLQDSSSVIRELDARGITY 68 Query: 75 RI-SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 + G ++ P + + K R+ A +GLPS GYE+FDK ++F TSF+Q + +R Sbjct: 69 ETKGEMGQTVLAPRADLAKLRMDFAGKGLPSQG-GIGYEIFDKGDAFSSTSFVQNVNHLR 127 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRH 193 A+EGE+AR+I++I + AARVH+V+P+ F + P+A+++++ + AIRH Sbjct: 128 AMEGELARSIRAIGRVQAARVHLVIPERRLFERDREAPSAAIVVKLMGDLDASQVRAIRH 187 Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKALAA 251 L A+AV L V+++D G+LL A E + G I+ + I + +A Sbjct: 188 LAASAVEGLKPERVSIVDERGRLLADGARGAEADGAGALEERQAGIERRMRSQIEEIVAG 247 Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311 +G R V AEL+++ + R +DP+S+V RS + ++ S T E VTV Sbjct: 248 IVGQGRARVQVTAELDLNRVESRSESFDPESRVVRSTQTR--SENSLTGGAEGQVTVGNE 305 Query: 312 MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV 371 +P +++ P P+ +++ K EE +NYEI+ + T + +L+RLS+AV+V+ Sbjct: 306 LPG-ANQNQPAPQQKDSSQKNEETTNYEISRVTKVETLEGGRLKRLSVAVLVDGVYAPGA 364 Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 G+ A Q + D+ +A I +V A G + RGD + + ++ F E Sbjct: 365 DGKPAYQPRSDAEIARITALVRTAVGYDKVRGDQVEVVNLRFAET 409 >gi|240140910|ref|YP_002965390.1| flagellar biosynthesis; basal-body MS(membrane and supramembrane)-ring and collar protein [Methylobacterium extorquens AM1] gi|240010887|gb|ACS42113.1| flagellar biosynthesis; basal-body MS(membrane and supramembrane)-ring and collar protein [Methylobacterium extorquens AM1] Length = 540 Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 126/405 (31%), Positives = 213/405 (52%), Gaps = 7/405 (1%) Query: 15 TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF 74 T LG RI +A+V L + F V+ P L+ L + D + + L I + Sbjct: 9 TKLGPARIAAMAAVTLTLVGFFAFVILRVSRPDMGVLFSDLSLQDSSSVIRELDARGITY 68 Query: 75 RI-SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 + G ++ P + + K R+ A +GLPS GYE+FDK ++F TSF+Q + +R Sbjct: 69 ETKGEMGQTVLAPRADLAKLRMDFAGKGLPSQG-GIGYEIFDKGDAFSSTSFVQNVNHLR 127 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRH 193 A+EGE+AR+I++I + AARVH+V+P+ F + P+A+++++ + AIRH Sbjct: 128 AMEGELARSIRAIGRVQAARVHLVIPERRLFERDREAPSAAIVVKLMGDLDASQVRAIRH 187 Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKALAA 251 L A+AV L V+++D G+LL A E + G I+ + I + +A Sbjct: 188 LAASAVEGLKPERVSIVDERGRLLADGARGAEADGAGALEERQAGIERRMRSQIEEIVAG 247 Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311 +G R V AEL+++ + R +DP+S+V RS + ++ S T E VTV Sbjct: 248 IVGQGRARVQVTAELDLNRVESRSESFDPESRVVRSTQTR--SENSLTGGAEGQVTVGNE 305 Query: 312 MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV 371 +P +++ P P+ +++ K EE +NYEI+ + T + +L+RLS+AV+V+ Sbjct: 306 LPG-ANQNQPAPQQKDSSQKNEETTNYEISRVTKVETLEGGRLKRLSVAVLVDGVYAPGA 364 Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 G+ A Q + D+ +A I +V A G + RGD + + ++ F E Sbjct: 365 NGKPAYQPRSDAEIARITALVRTAVGYDKVRGDQVEVVNLRFAET 409 >gi|254563420|ref|YP_003070515.1| basal-body MS biosynthesis protein [Methylobacterium extorquens DM4] gi|254270698|emb|CAX26702.1| flagellar biosynthesis; basal-body MS(membrane and supramembrane)-ring and collar protein [Methylobacterium extorquens DM4] Length = 540 Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 126/405 (31%), Positives = 213/405 (52%), Gaps = 7/405 (1%) Query: 15 TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF 74 T LG RI +A+V L + F V+ P L+ L + D + + L I + Sbjct: 9 TKLGPARIAAMAAVTLTLVGFFAFVILRVSRPDMGVLFSDLSLQDSSSVIRELDARGITY 68 Query: 75 RI-SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 + G ++ P + + K R+ A +GLPS GYE+FDK ++F TSF+Q + +R Sbjct: 69 ETKGEMGQTVLAPRADLAKLRMDFAGKGLPSQG-GIGYEIFDKGDAFSSTSFVQNVNHLR 127 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRH 193 A+EGE+AR+I++I + AARVH+V+P+ F + P+A+++++ + AIRH Sbjct: 128 AMEGELARSIRAIGRVQAARVHLVIPERRLFERDREAPSAAIVVKLMGDLDASQVRAIRH 187 Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKALAA 251 L A+AV L V+++D G+LL A E + G I+ + I + +A Sbjct: 188 LAASAVEGLKPERVSIVDERGRLLADGARGAEADGAGALEERQAGIERRMRSQIEEIVAG 247 Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311 +G R V AEL+++ + R +DP+S+V RS + ++ S T E VTV Sbjct: 248 IVGQGRARVQVTAELDLNRVESRSESFDPESRVVRSTQTR--SENSLTGGAEGQVTVGNE 305 Query: 312 MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV 371 +P +++ P P+ +++ K EE +NYEI+ + T + +L+RLS+AV+V+ Sbjct: 306 LPG-ANQNQPAPQQKDSSQKNEETTNYEISRVTKVETLEGGRLKRLSVAVLVDGVYAPGA 364 Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 G+ A Q + D+ +A I +V A G + RGD + + ++ F E Sbjct: 365 DGKPAYQPRSDAEIARITALVRTAVGYDKVRGDQVEVVNLRFAET 409 >gi|170696757|ref|ZP_02887869.1| flagellar M-ring protein FliF [Burkholderia graminis C4D1M] gi|170138336|gb|EDT06552.1| flagellar M-ring protein FliF [Burkholderia graminis C4D1M] Length = 600 Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 129/409 (31%), Positives = 207/409 (50%), Gaps = 27/409 (6%) Query: 23 LILASVILVPIM--LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80 LI A +LV I+ LF+ +R +P Y LY L D I AL +ANI ++ S+ G Sbjct: 67 LIFAVALLVAIVAGLFLWSR----APDYKVLYSNLSDRDGGAIITALQQANIPYKFSEAG 122 Query: 81 SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140 +I VPS V + R+ LA+QGLP S S G+EL D FG++ F ++I RALEGE+ Sbjct: 123 GAILVPSEQVHEMRLRLASQGLPKSGS-VGFELMDN-QKFGISQFAEQINYQRALEGELE 180 Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAA 198 RTI+S+S + +ARVH+ +P F + P+ASV++ + AI H+V++A Sbjct: 181 RTIESVSSVKSARVHLAIPKPSVFVRDKEAPSASVLVNLYPGRALDEGQVLAITHMVSSA 240 Query: 199 VPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNF 258 VP + + VT+LD G LLT + + L Q I+ + I+ LA G N Sbjct: 241 VPEMPVKGVTILDQDGNLLTQPSVGGGLDASQLKYRQQIERSTQQRIDAILAPLFGSGNA 300 Query: 259 RSAVVAELNMDTQQIREIVYDPDSKVER-SIRLSKDAQRSETS-------------QPES 304 S V A+++ + Y P+ ++ +IR + + +E S QP Sbjct: 301 HSQVSADIDFSRSEQTSENYGPNGNPQQAAIRSQQSSTATEMSQGGASGVPGALSNQPPQ 360 Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 + N P + V + +D+K+ +NYE++ ++RLS+AVVVN Sbjct: 361 PASAPINAPAGASGGV---TTTPVSDRKDMTTNYELDKTVRHLEQPMGGIKRLSVAVVVN 417 Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 R+ + G + Q LA++N++V A G +++RGD++ + + F Sbjct: 418 YLRVVDAKGHATMQPVTADKLAQVNQLVKDAMGFDAQRGDSVNVVNSPF 466 >gi|163853490|ref|YP_001641533.1| flagellar MS-ring protein [Methylobacterium extorquens PA1] gi|163665095|gb|ABY32462.1| flagellar M-ring protein FliF [Methylobacterium extorquens PA1] Length = 540 Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 126/405 (31%), Positives = 213/405 (52%), Gaps = 7/405 (1%) Query: 15 TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF 74 T LG RI +A+V L + F V+ P L+ L + D + + L I + Sbjct: 9 TKLGPARIAAMAAVTLTLVGFFAFVILRVSRPDMGVLFSDLSLQDSSSVIRELDARGITY 68 Query: 75 RI-SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 + G ++ P + + K R+ A +GLPS GYE+FDK ++F TSF+Q + +R Sbjct: 69 ETKGEMGQTVLAPRADLAKLRMDFAGKGLPSQG-GIGYEIFDKGDAFSSTSFVQNVNHLR 127 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRH 193 A+EGE+AR+I++I + AARVH+V+P+ F + P+A+++++ + AIRH Sbjct: 128 AMEGELARSIRAIGRVQAARVHLVIPERRLFERDREAPSAAIVVKLMGDLDASQVRAIRH 187 Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKALAA 251 L A+AV L V+++D G+LL A E + G I+ + I + +A Sbjct: 188 LAASAVEGLKPERVSIVDERGRLLADGARGAEADGAGALEERQAGIERRMRSQIEEIVAG 247 Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311 +G R V AEL+++ + R +DP+S+V RS + ++ S T E VTV Sbjct: 248 IVGQGRARVQVTAELDLNRVESRSESFDPESRVVRSTQTR--SENSLTGGAEGQVTVGNE 305 Query: 312 MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV 371 +P +++ P P+ +++ K EE +NYEI+ + T + +L+RLS+AV+V+ Sbjct: 306 LPG-ANQNQPAPQQKDSSQKNEETTNYEISRVTKVETLEGGRLKRLSVAVLVDGVYAPGA 364 Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 G+ A Q + D+ +A I +V A G + RGD + + ++ F E Sbjct: 365 DGKPAYQPRSDAEIARIAALVRTAVGYDKVRGDQVEVVNLRFAET 409 >gi|307731342|ref|YP_003908566.1| flagellar M-ring protein FliF [Burkholderia sp. CCGE1003] gi|307585877|gb|ADN59275.1| flagellar M-ring protein FliF [Burkholderia sp. CCGE1003] Length = 600 Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 136/446 (30%), Positives = 218/446 (48%), Gaps = 29/446 (6%) Query: 35 LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKAR 94 LF+ +R +P Y LY L D I AL +ANI ++ SD G +I VP+ V + R Sbjct: 81 LFLWSR----APDYKVLYSNLSDRDGGAIITALQQANIPYKFSDAGGAILVPAEQVHEMR 136 Query: 95 IHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARV 154 + LA+ GLP S S G+EL D FG++ F ++I RALEGE+ RTIQSIS + +ARV Sbjct: 137 LRLASLGLPKSGS-VGFELMDN-QKFGISQFAEQINYQRALEGELERTIQSISSVKSARV 194 Query: 155 HIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDS 212 H+ +P F + P+ASV++ + AI H+V++AVP + + VT+LD Sbjct: 195 HLAIPKPSVFVRDKEAPSASVLVNLYPGRALDEGQVLAITHMVSSAVPEMPVKGVTILDQ 254 Query: 213 TGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272 G LLT + + L Q I+ + I+ LA G N S V A+++ + Sbjct: 255 DGNLLTQPSVGGGLDASQLKYRQQIERNTQQRIDAILAPLFGAGNAHSQVSADIDFSRSE 314 Query: 273 IREIVYDPDSKVER-SIRLSKDAQRSETS-------------QPESAVTVEQNMPHVSDR 318 Y P+ ++ +IR + + +E S QP + N P+ + Sbjct: 315 QTSEAYGPNGNPQQAAIRSQQSSTATEMSQGGASGVPGALSNQPPQPASAPINAPNGASS 374 Query: 319 KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ 378 V + +D+K+ +NYE++ ++RLS+AVVVN R+ + GR+ Q Sbjct: 375 SV---TTTPVSDRKDMTTNYELDKTVRHLEQPMGGIKRLSVAVVVNYLRVVDGKGRATMQ 431 Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS--RHF 436 LA++N++V A G +++RGD++ + + F N+ D+L+ + Sbjct: 432 PVSADKLAQVNQLVKDAMGFDAQRGDSVNVVNSPFTAELDPNADLPWWRTPDMLALYKQI 491 Query: 437 ATVINALVFLVGTLLVTFLGLHALRR 462 AT + + V L + ALRR Sbjct: 492 ATYLG--IGAVALFLYFVMVKPALRR 515 >gi|118593642|ref|ZP_01551018.1| flagellar M-ring protein [Stappia aggregata IAM 12614] gi|118433753|gb|EAV40414.1| flagellar M-ring protein [Stappia aggregata IAM 12614] Length = 537 Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 160/557 (28%), Positives = 273/557 (49%), Gaps = 37/557 (6%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++ L++F K+ LG RI + +V + + +F F V +P LY +L + D I Sbjct: 1 MNGLVEFIKT---LGAARIAAMGAVAAILVGVFAFIIFRVTAPQMTTLYNELTLEDSAAI 57 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L + F I+ G+SI VP+ V + R+ LAA+GLP+ S GYE+FD+ ++ G T Sbjct: 58 VSQLESQGVQFEIARQGASILVPNEQVARLRMQLAAEGLPTGGS-IGYEIFDRSDTLGAT 116 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AI 180 SF+Q I +RA+EGE++RTI S+ I AARVH+V+P+ F+K P+AS+++ A+ Sbjct: 117 SFVQNINHLRAMEGELSRTIGSLDRIRAARVHLVIPERQLFQKDRRPPSASIVLNVRGAL 176 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSI-VQAI 237 P + A++HLVA AV L+ V+++D +G+LL + E +L SL + Sbjct: 177 GPGEIR---AVQHLVATAVDGLEPDRVSIVDESGRLLASGVGNDEDGLLTNSLQERTVEV 233 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + + I + L + +G R V AE++ + +DPD +V RS + SK+ S Sbjct: 234 EGRLRNQIEEILNSVVGPGRARVRVNAEVDYNRLTETTETFDPDGQVVRSTQ-SKEEASS 292 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 S+ VTV +P+ + R + + EE NYEI+ + + K++RL Sbjct: 293 AVSR-NGQVTVANQLPNADAGQGGAER--DTSSVTEEIVNYEISHSTRTEVVEAGKIKRL 349 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL--- 414 S+AV+V+ + G S + L I +V +A G +S RGD + + ++ F Sbjct: 350 SVAVLVDGTYQPDGNGGSTYTPRSQETLDRIAVLVRSAVGFDSERGDVVEVVNLQFALPP 409 Query: 415 ENQLFNSGTVQVSFM--DILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 ++ L F DI+ FA + ++FL+ +L+ F+ LRR+ ++ + Sbjct: 410 QDDLLAESDSLFDFTRNDII--RFAEL--GVLFLIAVMLLLFVVRPLLRRIVTPEEKQPQ 465 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 E L P + V +P + D + ++ + S ++K D Sbjct: 466 E------LMIGPDGTLVIETEVPQEEAVEDEFVIEWLEQAKQEGAMQASSIAKVGD---- 515 Query: 533 HMIEINEERFAKILRKW 549 MI+ + I+R W Sbjct: 516 -MIKDHPTEAVTIVRGW 531 >gi|91785611|ref|YP_560817.1| flagellar MS-ring protein [Burkholderia xenovorans LB400] gi|91689565|gb|ABE32765.1| Flagellar FliF M-ring protein [Burkholderia xenovorans LB400] Length = 600 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 136/446 (30%), Positives = 215/446 (48%), Gaps = 30/446 (6%) Query: 35 LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKAR 94 LF+ +R +P Y LY L D I AL ANI ++ SD G +I VP+ V + R Sbjct: 80 LFLWSR----APDYKVLYSNLSDRDGGAIITALQAANIPYKFSDAGGAILVPAEQVHEMR 135 Query: 95 IHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARV 154 + LA+QGLP S S G+EL D FG++ F ++I RALEGE+ RT++SIS + +ARV Sbjct: 136 LRLASQGLPKSGS-VGFELMDN-QKFGISQFAEQINYQRALEGELERTVESISSVKSARV 193 Query: 155 HIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDS 212 H+ +P F + P+ASV++ + AI H+V++AVP++ + VT+LD Sbjct: 194 HLAIPKPSVFVRDKEAPSASVLVNLYPGRALDEGQVLAITHMVSSAVPDMPVKGVTILDQ 253 Query: 213 TGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272 G LLT + L Q I+ + I+ LA G N S V A+++ + Sbjct: 254 DGNLLTQPSTGSGLDASQLKYRQQIERSTQQRIDAILAPLFGSGNAHSQVSADIDFSRSE 313 Query: 273 IREIVYDPDSKVER-SIRLSKDAQRSETS-------------QPESAVTVEQNMPHVSDR 318 Y P+ ++ +IR + + +E S QP + N P + Sbjct: 314 QTSENYGPNGNPQQAAIRSQQSSSATEMSQGGASGVPGALSNQPPQPASAPINAPTGASG 373 Query: 319 KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ 378 P S D+K+ +NYE++ ++RLS+AVVVN R+ + G + Q Sbjct: 374 VTTTPVS----DRKDSTTNYELDKTVRHLERPMGGIKRLSVAVVVNYLRVVDAKGHATMQ 429 Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDI--LSRHF 436 LA++N++V A G ++ RGD++ + + F + N+ D+ L+R Sbjct: 430 PVTADKLAQVNQLVKDAMGFDAARGDSVNVVNSPFTTDLDPNADLPWWRTPDMIALARQV 489 Query: 437 ATVINALVFLVGTLLVTFLGLHALRR 462 AT + + V L + ALRR Sbjct: 490 ATYLG--IGAVALFLYFVMVKPALRR 513 >gi|323527692|ref|YP_004229845.1| flagellar M-ring protein FliF [Burkholderia sp. CCGE1001] gi|323384694|gb|ADX56785.1| flagellar M-ring protein FliF [Burkholderia sp. CCGE1001] Length = 600 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 135/446 (30%), Positives = 216/446 (48%), Gaps = 29/446 (6%) Query: 35 LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKAR 94 LF+ +R +P Y LY L D I AL +ANI ++ SD G +I VP+ V + R Sbjct: 81 LFLWSR----APDYKVLYSNLSDRDGGAIITALQQANIPYKFSDAGGAILVPAEQVHEMR 136 Query: 95 IHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARV 154 + LA+QGLP S S G+EL D FG++ F ++I RALEGE+ RTI+SIS + +ARV Sbjct: 137 LRLASQGLPKSGS-VGFELMDN-QKFGISQFAEQINYQRALEGELERTIESISSVKSARV 194 Query: 155 HIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDS 212 H+ +P F + P+ASV++ + AI H+V++AVP + + VT+LD Sbjct: 195 HLAIPKPSVFVRDKEAPSASVLVNLFPGRALDEGQVLAITHMVSSAVPEMPVKGVTILDQ 254 Query: 213 TGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272 G LLT + L Q I+ + I+ LA G N S V A+++ + Sbjct: 255 DGNLLTQPSTGGGLDASQLKYRQQIERNTQQRIDAILAPLFGAGNAHSQVSADIDFSRSE 314 Query: 273 IREIVYDPDSKVER-SIRLSKDAQRSETS-------------QPESAVTVEQNMPHVSDR 318 Y P+ ++ +IR + + +E S QP + N P+ + Sbjct: 315 QTSENYGPNGNPQQAAIRSQQSSTATEMSQGGASGVPGALSNQPPQPASAPINAPNGASS 374 Query: 319 KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ 378 V + +D+K+ +NYE++ + RLS+AVVVN R+ + G + Q Sbjct: 375 SV---TTTPVSDRKDMTTNYELDKTVRHLEQPMGGIRRLSVAVVVNYLRVVDGKGHATMQ 431 Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS--RHF 436 LA++N++V A G +++RGD++ + + F N+ D+L+ + Sbjct: 432 PVSADKLAQVNQLVKDAMGFDAQRGDSVNVVNSPFTAELDPNADLPWWRTPDMLALYKQI 491 Query: 437 ATVINALVFLVGTLLVTFLGLHALRR 462 AT + + V L + ALRR Sbjct: 492 ATYLG--IGAVALFLYFVMVKPALRR 515 >gi|163781742|ref|ZP_02176742.1| Flagellar M-ring protein [Hydrogenivirga sp. 128-5-R1-1] gi|159882962|gb|EDP76466.1| Flagellar M-ring protein [Hydrogenivirga sp. 128-5-R1-1] Length = 502 Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 136/398 (34%), Positives = 205/398 (51%), Gaps = 32/398 (8%) Query: 26 ASVILVPIMLF---MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 A V+ +P ++F + + P Y LY L D+N + L + + +++ +G + Sbjct: 24 ALVVGLPAVIFSLLVTVLIYSLQPDYAVLYSNLSPEDMNAVLTELDKEGVKYKVGRDGRT 83 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP + V R+ LAA+G+P+ GYELFDK ++ GL+ F Q + RA+EGE+ RT Sbjct: 84 ILVPENKVRDVRLKLAAKGIPNKGV-IGYELFDK-STIGLSEFQQRVNFKRAIEGELVRT 141 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLVAAAV 199 I I ARVHI +P+ F + P+ASV IR + P + E AIR+LVAA++ Sbjct: 142 ILRFKNIEDARVHIALPEKSIFLRDEKEPSASVFIR-LRPGAEITEEQVKAIRNLVAASI 200 Query: 200 PNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDN 257 NL +V V+D G+ LTAN E + I K L I + + EIE + AL LG N Sbjct: 201 ENLKPENVVVIDDKGRNLTANLDEGKEEISNKQLKIRREFEREIERKVQTALEEALGYGN 260 Query: 258 FRSAVVAELNMDTQQIREIVYDPD--SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV 315 + V EL+ Q RE YDPD + V R K P +A + V Sbjct: 261 VKVRVSVELDFTKVQRREETYDPDMTAVVSEQKRKEKTTGAPVGGVPGAAANIPPGTGAV 320 Query: 316 SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS 375 + L T+KKE +NYE++ K + + + K++RLS+ V++NK L +V S Sbjct: 321 QGQGGTL------TEKKETITNYEVSKKEVISVDNTLKIKRLSVGVIINK-ELKDVNEES 373 Query: 376 ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 I KIVSAA G++ +RGDT+++ ++ F Sbjct: 374 ------------IKKIVSAAVGLDPKRGDTLSVVAVPF 399 >gi|75674797|ref|YP_317218.1| flagellar MS-ring protein [Nitrobacter winogradskyi Nb-255] gi|74419667|gb|ABA03866.1| flagellar FliF M-ring protein [Nitrobacter winogradskyi Nb-255] Length = 541 Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 161/558 (28%), Positives = 269/558 (48%), Gaps = 40/558 (7%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 LL F K LG +R++ + +V V I F V +P L+ L V D + I Sbjct: 4 LLAFLKG---LGASRLMAMVAVTAVLIGFFAFVIMRVTTPQMTTLFTDLSVEDSSGIIKD 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L I F + ++G+ I VP V + R+ LA GLP GYE+FDK ++ G TSF+ Sbjct: 61 LERQAIPFELRNDGAVIMVPKDKVTRLRMKLAEAGLPKGG-GVGYEIFDKSDALGTTSFV 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 Q I R+RALEGE+ARTI++I + ARVH+V+P+ F + +P+AS+++R + Sbjct: 120 QNINRLRALEGELARTIRAIDRVQDARVHLVLPERPLFTREAPQPSASIVLRVRGGLEPQ 179 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQAIQHEIEM 243 AIRHLVA+AV L V+++D TG+LL +A + + + G A + + Sbjct: 180 QIRAIRHLVASAVNGLKPQRVSIVDETGQLLADGSATDAD-GVSGDERRA--AFEKRMRS 236 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIV--YDPDSKVERSIRLSKDAQRSETSQ 301 + +++ +G N R+ V + D +I + +DP+ +V RS + +++ S T+ Sbjct: 237 QVEAIVSSVVG--NGRARVQLSADFDYNKITQTSDKFDPEGRVLRSSQTREES--SLTAD 292 Query: 302 PESAVTVEQNMP--HVSDRKVPLPRSLENTDKK-EEQSNYEINTKSIATTHDNYKLERLS 358 VTV +P SD P + + KK EE +NYEI+ + + ++ R+S Sbjct: 293 NNGQVTVNNELPGNQPSDN----PNTARDQSKKSEETNNYEISRTTKTEVTEAGRVNRIS 348 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 +AV+V+ G+ + + L I +V +A G + +RGD + + ++ F E + Sbjct: 349 VAVLVDGAYARNDKGQMVYEERSQEQLDRIATLVRSAIGFDQKRGDQVEVVNLKFAEPPV 408 Query: 419 ---FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL-RRLHNIDDAKKGEV 474 T + M + V V + L+VTF+ + L +R+ + A Sbjct: 409 VVPLAEPTGWLGMMTLTKDDVMYVFELGVMALLGLVVTFMVIRPLVQRILAAEPATPSAQ 468 Query: 475 GGKSILSPPPISSAVT-TG--LMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 ++ P S+ T TG L+P N ++ Q I +++ V QS R+ Sbjct: 469 PAAALPVPADASAQPTETGQNLIPGSN----ATAQLIDV------AQVQGQVHAQSVHRV 518 Query: 532 LHMIEINEERFAKILRKW 549 + E N A I+R+W Sbjct: 519 GELAERNPAETASIIRQW 536 >gi|187925740|ref|YP_001897382.1| flagellar MS-ring protein [Burkholderia phytofirmans PsJN] gi|187716934|gb|ACD18158.1| flagellar M-ring protein FliF [Burkholderia phytofirmans PsJN] Length = 603 Score = 180 bits (456), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 125/395 (31%), Positives = 196/395 (49%), Gaps = 26/395 (6%) Query: 35 LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKAR 94 LF+ +R +P Y LY L D I AL ANI ++ SD G +I VP+ V + R Sbjct: 81 LFLWSR----APDYKVLYSNLSDRDGGAIITALQAANIPYKFSDAGGAILVPAEQVHEMR 136 Query: 95 IHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARV 154 + LA+QGLP S S G+EL D FG++ F ++I RALEGE+ RTI+SIS + +ARV Sbjct: 137 LRLASQGLPKSGS-VGFELMDN-QKFGISQFAEQINYQRALEGELERTIESISSVKSARV 194 Query: 155 HIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDS 212 H+ +P F + P+ASV++ + AI H+V++AVP++ + VT+LD Sbjct: 195 HLAIPKPSVFVRDKEAPSASVLVNLYPGRALDEGQVLAITHMVSSAVPDMPVKGVTILDQ 254 Query: 213 TGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272 G LLT + L Q I+ + I+ LA G N S V A+++ + Sbjct: 255 DGNLLTQLSTGSGLDASQLKYRQQIERSTQQRIDAILAPLFGSGNAHSQVSADIDFSHSE 314 Query: 273 IREIVYDPDSKVER-SIRLSKDAQRSETS-------------QPESAVTVEQNMPHVSDR 318 Y P+ ++ +IR + + +E S QP + N P+ + Sbjct: 315 QTSENYGPNGNPQQAAIRSQQSSSATEMSQGAASGVPGALSNQPPQPASAPINAPNGASG 374 Query: 319 KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ 378 P S D+K+ +NYE++ ++RLS+AVVVN R+ + G + Q Sbjct: 375 VTTTPVS----DRKDSTTNYELDKTVRHLERPMGGIKRLSVAVVVNYLRVVDAKGHATMQ 430 Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 LA++N++V A G + RGD++ + + F Sbjct: 431 PVTADKLAQVNQLVKDAMGFDQARGDSVNVVNSPF 465 >gi|292492381|ref|YP_003527820.1| flagellar M-ring protein FliF [Nitrosococcus halophilus Nc4] gi|291580976|gb|ADE15433.1| flagellar M-ring protein FliF [Nitrosococcus halophilus Nc4] Length = 566 Score = 179 bits (455), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 144/548 (26%), Positives = 258/548 (47%), Gaps = 58/548 (10%) Query: 28 VILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPS 87 +I V + L + + SP+Y LY + + I AL +ANID+++ + ++ VP+ Sbjct: 46 MIAVSVALGVGIFLWSQSPNYQILYGAVSGKEKGEIVEALQKANIDYQLDEATGALMVPA 105 Query: 88 SMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSIS 147 S V + R+ LA +GLP S+ +G+EL ++ FG++ F+++ R LEGE+ARTI +++ Sbjct: 106 SQVHEVRLQLAMEGLPRSA-GTGFELLEQNPGFGVSEFLEKARYQRVLEGELARTISTLN 164 Query: 148 GIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNL 202 + +ARVH+ +P F + P+ASV++ R + P AI HLVA+++P L Sbjct: 165 NVKSARVHLALPKRSVFIRDRKVPSASVVLDLYPGRMLAPG---QVAAITHLVASSIPEL 221 Query: 203 DMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRS 260 + VTV++ G LLT E + + + I+ E I + LA +G D R+ Sbjct: 222 ESAGVTVVNQEGDLLTQPERSQTLEMTASQFEYTRRIEEEYGHRIQRILAPLVGADKVRA 281 Query: 261 AVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV 320 VVAE++ + + Y+P+ + RS + +++ +R P N P + Sbjct: 282 QVVAEVDFTVTEQTQERYEPEKRALRSEQTAEE-ERIGGRLPGGIPGALSNQP---PDEA 337 Query: 321 PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE--------------RLSIAVVVNKG 366 +P +L ++ E Q + +++S+ T NY+L+ RLS+AV+V++ Sbjct: 338 QVPETLNGANEGESQPSEPPSSRSLRATR-NYELDRTISHIRLAPGDIRRLSVAVLVDEK 396 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV-- 424 +T+ G + + L I +V A G N RGDTI + + F+ N+ Sbjct: 397 LVTDAEGNVSTSPRSPQELEHITGLVKEAVGFNPDRGDTINVINAPFVPNEELEPLPEPP 456 Query: 425 --QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482 Q + + + ++ L L+G L TF RRL + P Sbjct: 457 FWQQEWFWVAVKQGGGILAVLFLLLGVLRPTF------RRLTTV---------------P 495 Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL-RLLHMIEINEER 541 P++ D L + S++ LQ ++ S +++L R+ M + ER Sbjct: 496 EPVTVPSLPKGSDEDKEGLKEDRLTLSSNAPTLQ--LSGPDSLEANLERVRKMAADDSER 553 Query: 542 FAKILRKW 549 A++++ W Sbjct: 554 VAQVVKNW 561 >gi|296157432|ref|ZP_06840267.1| flagellar M-ring protein FliF [Burkholderia sp. Ch1-1] gi|295892204|gb|EFG71987.1| flagellar M-ring protein FliF [Burkholderia sp. Ch1-1] Length = 600 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 139/480 (28%), Positives = 224/480 (46%), Gaps = 43/480 (8%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y LY L D I AL ANI ++ SD G +I VP+ V + R+ LA+Q Sbjct: 82 LWSRAPDYKVLYSNLSDRDGGAIITALQAANIPYKFSDAGGAILVPAEQVHEMRLRLASQ 141 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S S G+EL D FG++ F ++I RALEGE+ RT++SIS + +ARVH+ +P Sbjct: 142 GLPKSGS-VGFELMDN-QKFGISQFAEQINYQRALEGELERTVESISSVKSARVHLAIPK 199 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV++ + AI H+V++AVP++ + VT+LD G LLT Sbjct: 200 PSVFVRDKEAPSASVLVNLYPGRALDEGQVLAITHMVSSAVPDMPVKGVTILDQDGNLLT 259 Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 + L Q I+ + I+ LA G N S V A+++ + Y Sbjct: 260 QPSTGNGLDASQLKYRQQIERSTQQRIDAILAPLFGSGNAHSQVSADIDFSHSEQTSENY 319 Query: 279 DPDSKVER-SIRLSKDAQRSETS-------------QPESAVTVEQNMPHVSDRKVPLPR 324 P+ ++ +IR + + +E S QP + N P + P Sbjct: 320 GPNGNPQQAAIRSQQSSSATEMSQGAASGVPGALSNQPPQPASAPINAPTGASGVTTTPV 379 Query: 325 SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY 384 S D+K+ +NYE++ ++RLS+AVVVN R+ + G + Q Sbjct: 380 S----DRKDSTTNYELDKTVRHLERPMGGIKRLSVAVVVNYLRVVDAKGHATMQPVTADK 435 Query: 385 LAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDI--LSRHFATVINA 442 LA++N++V A G + RGD++ + + F + N+ D+ L++ AT + Sbjct: 436 LAQVNQLVKDAMGFDQARGDSVNVVNSAFSTDLDPNADLPWWRTPDMIALAKQIATYLG- 494 Query: 443 LVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALD 502 + V L + ALRR + PP++ A+ + P++ I LD Sbjct: 495 -IGAVALFLYFVMVKPALRRAFPPPE--------------PPVAGALPS---PDEPILLD 536 >gi|300114783|ref|YP_003761358.1| flagellar M-ring protein FliF [Nitrosococcus watsonii C-113] gi|299540720|gb|ADJ29037.1| flagellar M-ring protein FliF [Nitrosococcus watsonii C-113] Length = 567 Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 120/417 (28%), Positives = 221/417 (52%), Gaps = 26/417 (6%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 SL + L+LA I + L + + +P Y +Y + + I AL +ANI++R Sbjct: 36 SLQKQVGLLLA--IAASVALVVGVVMWALAPTYQVMYGAVTGEEKGEIVAALQKANIEYR 93 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135 +++N +I VP+S V + R+ LA +GLP S+++G+EL ++ FG + F+++ RAL Sbjct: 94 LAENTGAIMVPASKVHEVRLQLAMEGLP-RSADTGFELLEQNPGFGASEFLEKARYQRAL 152 Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEA 190 EGE+ARTI +++ + ARVH+ +P F + P+ASV++ RA++P A Sbjct: 153 EGELARTIGTLNNVRNARVHLALPKQSVFIRNRQAPSASVVLDLYAGRALDPG---QVAA 209 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS---LSIVQAIQHEIEMNINK 247 I HLV++++PNL+ VT++D G LLT + ++ LG + + ++ + I Sbjct: 210 ITHLVSSSIPNLESSGVTLVDQRGNLLTRQDRSQS-LGMTEGQFEYTRRLEEKYIRRIQH 268 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE--------- 298 LA +G D R+ VVAE++ + + Y+P+S RS ++S++ + Sbjct: 269 ILAPMIGSDKARAQVVAEVDFTVTEQTQEYYNPESAALRSEQMSEEERTGSRFPQGIPGA 328 Query: 299 -TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 ++QP + + +P +D + P+ ++ T + NYE++ + + RL Sbjct: 329 LSNQPPAEAQAPEVVPEANDDEAPI-EAVPTTRSQRATRNYELDRTISHSRLSPGSIRRL 387 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 S+AV+V++ + + G + + LA++ +V A G N+ RGDTI + + F+ Sbjct: 388 SVAVLVDEKAVADAEGTVSTVPRSPQELAQVTALVKEAVGFNAERGDTINVINAPFV 444 >gi|154252631|ref|YP_001413455.1| flagellar M-ring protein FliF [Parvibaculum lavamentivorans DS-1] gi|154156581|gb|ABS63798.1| flagellar M-ring protein FliF [Parvibaculum lavamentivorans DS-1] Length = 552 Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 127/407 (31%), Positives = 216/407 (53%), Gaps = 14/407 (3%) Query: 16 SLGRTRI--LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73 SLG R+ L L ++ L F+A R N P L+ + V D ++ L A + Sbjct: 10 SLGTMRLAALGLVAIALFSFFAFIALRMG-NEPKA-LLFSDVGVEDAAKMIAELDAAKVS 67 Query: 74 FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 + + NG I VP + V + R+ LA +GLP+ + GYE+FD ++ G TSF+Q I +R Sbjct: 68 YELRGNGGMIYVPQADVLRLRMMLAGKGLPAGGT-VGYEIFDNADALGTTSFLQNINHLR 126 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-AINPSVYKSAEAIR 192 ALEGE+ARTI++I GI ARVH+V+P+ F + PTAS++++ + N + +AI+ Sbjct: 127 ALEGELARTIRAIEGIGGARVHLVLPERELFSRDRREPTASIVLKVSRNSLTTQQVKAIQ 186 Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQ-AIQHEIEMNINKAL 249 +LVA+AV L G V+++D G LL + E +++L S+ + ++ + ++ L Sbjct: 187 YLVASAVDGLSPGRVSIVDERGALLASGVGEDTQSLLVTSVDERRTGYENRLRTHLENIL 246 Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREI--VYDPDSKVERSIRLSKDAQRSETSQPESAVT 307 +G D R V A+ MD +I + +DP+ +V RS + D S VT Sbjct: 247 QRVVGADKARVEVTAQ--MDYNRITQTSDTFDPNGQVVRSTQTVDDNSTSADGAQNDGVT 304 Query: 308 VEQNMPHVSDRKVPLPR-SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 V N+P+ + S + +++ EE NYEI+ + + +++RLS+AV+V+ Sbjct: 305 VGNNLPNANLGGAEAETGSRQASNRTEETVNYEISRTTKTEVLEPGRVKRLSVAVLVDGS 364 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 + G + + + L +I +V +A G ++ RGD + I ++ F Sbjct: 365 YAADAEGNTVYTPRTEQELGKIEALVKSAIGFDTSRGDQVEIVNLQF 411 >gi|254502238|ref|ZP_05114389.1| flagellar M-ring protein FliF [Labrenzia alexandrii DFL-11] gi|222438309|gb|EEE44988.1| flagellar M-ring protein FliF [Labrenzia alexandrii DFL-11] Length = 538 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 125/416 (30%), Positives = 219/416 (52%), Gaps = 15/416 (3%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++ L++F K+ LG RI + +V + + +F F V +P LY +L + D I Sbjct: 1 MNGLIEFIKT---LGPARIAAMGAVAAILVGVFAFIIFRVTAPQMTTLYNELTLEDSAAI 57 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L + F+++ G+SI VP V + R+ LAA+GLP+ S GYE+FD+ ++ G T Sbjct: 58 VSQLESQGVQFKLAREGASIMVPQEQVARLRMQLAAEGLPTGGS-IGYEIFDRSDTLGAT 116 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AI 180 SF+Q I +RA+EGE++RTI S+ I +ARVH+V+P+ F++ P+AS+++ + Sbjct: 117 SFVQNINHLRAMEGELSRTISSLDRIRSARVHLVIPERQLFQRDRRPPSASIVLNVRGGL 176 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQAI 237 P + A++HLVA AV LD V+++D +G+LL +++ E + + AI Sbjct: 177 GPGEIR---AVQHLVATAVDGLDPDKVSIVDESGRLLASGASSDDEGMVSARLQERSTAI 233 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + + + + L + +G R V A+++ + +DP+ +V RS + SK+ S Sbjct: 234 ESRLRNQVEEILNSVVGPGRARVRVNADIDFNRLTETTETFDPEGQVVRSTQ-SKEEATS 292 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 T Q + VTV +P+ + + + EE NYEI+ + + ++ RL Sbjct: 293 STRQ-DGQVTVGNELPNADANQNNDAEEQDTSSLTEEIVNYEISRSTRTEVVEAGRITRL 351 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 S+AV+V+ T+ G S + L I +V +A G + RGD + + ++ F Sbjct: 352 SVAVLVDGTYQTDEDGNSIYTPRAQEALDRIAVLVRSAVGFDEARGDVVEVINLQF 407 >gi|78067882|ref|YP_370651.1| flagellar MS-ring protein [Burkholderia sp. 383] gi|77968627|gb|ABB10007.1| Flagellar FliF M-ring protein [Burkholderia sp. 383] Length = 587 Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 122/413 (29%), Positives = 204/413 (49%), Gaps = 25/413 (6%) Query: 18 GRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS 77 G ++ L +V + + A + +P Y LY L D I AL +AN+ ++ + Sbjct: 57 GNPKLPFLIAVAFA-VAVITALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFA 115 Query: 78 DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137 D G +I VPS+ V + R+ LAA GLP S G+EL D FG++ F ++I RALEG Sbjct: 116 DAGGAILVPSNQVHETRLKLAAMGLPKGGS-VGFELMDN-QKFGISQFAEQINYQRALEG 173 Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLV 195 E+ RTI+SI+ + ARVH+ +P F + P+ASV + V + AI +V Sbjct: 174 ELQRTIESINAVRGARVHLAIPKPSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMV 233 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255 ++ VP++ +VT++D G LLT + L VQ ++H + I+ LA G Sbjct: 234 SSGVPDMPAKNVTIVDQDGNLLTQTASASGLDASQLKYVQQVEHNTQKRIDAILAPIFGT 293 Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERS-IRLSKDAQRSETSQ------------- 301 N RS V A+L+ + Y P+ ++S IR + + +E +Q Sbjct: 294 GNARSQVSADLDFSKIEQTSESYGPNGNPQQSAIRSQQTSSATELAQGGASGVPGALSNT 353 Query: 302 -PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 P+ A + P V+ P++ +D+K++ +NYE++ ++RLS+A Sbjct: 354 PPQPA-----SAPIVAGNGQNAPQTTPVSDRKDQTTNYEVDKTIRHLEQPMGSVKRLSVA 408 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 VVVN + + G Q + LA++ ++V A G + +RGD++ + + F Sbjct: 409 VVVNYQPVADAKGHVTMQPLPPAKLAQVEQLVKDAMGYDEKRGDSVNVVNSAF 461 >gi|209522223|ref|ZP_03270859.1| flagellar M-ring protein FliF [Burkholderia sp. H160] gi|209497337|gb|EDZ97556.1| flagellar M-ring protein FliF [Burkholderia sp. H160] Length = 555 Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 139/461 (30%), Positives = 224/461 (48%), Gaps = 34/461 (7%) Query: 23 LILASVILVPIM--LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80 L+ A +LV ++ LF+ +R +P Y LY L D I AL +ANI +++SD+G Sbjct: 26 LVFAIALLVAVVAGLFLWSR----TPDYKVLYSNLSDRDGGSIIAALQQANIPYKLSDSG 81 Query: 81 SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140 +I VP+ V + R+ LA+QGLP S S G+EL D FG++ F ++I R+LEGE+ Sbjct: 82 GAILVPAEQVHEMRLRLASQGLPKSGS-VGFELMDN-QKFGISQFNEQINYQRSLEGELE 139 Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAA 198 RTI+SIS + +ARVH+ +P F + P+A+V++ V + AI H+V++A Sbjct: 140 RTIESISSVKSARVHLAIPKPSVFVRDKEAPSAAVLVNLYPGRVLDEGQVVAITHMVSSA 199 Query: 199 VPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNF 258 VP + + VT+LD G LLT + L Q I+ + I+ LA G N Sbjct: 200 VPEMPVRGVTILDQDGNLLTQPSNGSGLDATQLKFRQQIERNTQQRIDAILAPLFGPGNA 259 Query: 259 RSAVVAELNMDTQQIREIVYDPD-SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSD 317 RS V A+++ + Y P+ S + +IR + + +E SQ ++ +P Sbjct: 260 RSQVSADIDFSHSEQTSENYGPNGSPQQAAIRSQQSSSATEMSQGGAS-----GVPGALS 314 Query: 318 RKVPLPRS--------------LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 + P P S +D K+ +NYE++ + RLS+AVVV Sbjct: 315 NQPPQPASAPIVAANGASSVATTPISDHKDSTTNYELDKTVRHVDQPMGGIHRLSVAVVV 374 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 N R+ + G Q L +I ++V A G ++ RGD++ + + F + N+ Sbjct: 375 NYLRVVDAKGHVTMQPVSADKLMQITQLVKDAMGFDASRGDSVNVVNSAFTTDLDPNADL 434 Query: 424 VQVSFMDILS--RHFATVINALVFLVGTLLVTFLGLHALRR 462 D+L+ + AT + + V L + ALRR Sbjct: 435 PWWRTPDMLALYKQIATYLG--IGAVALFLYFVMVKPALRR 473 >gi|302383920|ref|YP_003819743.1| flagellar M-ring protein FliF [Brevundimonas subvibrioides ATCC 15264] gi|302194548|gb|ADL02120.1| flagellar M-ring protein FliF [Brevundimonas subvibrioides ATCC 15264] Length = 542 Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 121/380 (31%), Positives = 201/380 (52%), Gaps = 15/380 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110 LY L++ + I+ +L ++ I + +GS+I V VG+AR+ LA +GL +S S G Sbjct: 45 LYSNLDLREAGEITASLEQSGIPYSTRGDGSTIMVNRDQVGEARLMLAGKGLVTSGS-VG 103 Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170 YELFD + G T F Q+I+ RAL+GE+ARTI S+ G+ +ARV I +P F++ A Sbjct: 104 YELFDTQSVLGQTEFQQQISEQRALQGELARTIMSMRGVQSARVAIALPKRELFQQDAAE 163 Query: 171 PTASVMI----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI 226 PTASV++ R ++ + AIR ++A++VPNL VTV+D T + L A + E Sbjct: 164 PTASVVVGLGGRKLSSDQVR---AIRAVIASSVPNLKPNKVTVVDETNQTLAAADDEAGF 220 Query: 227 LGKSLSIVQ-AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVE 285 + + A + +++ I + +G R V A+++M +E YDPD +V Sbjct: 221 SSATAEEAKGATEAQLQQRIKDLVEGVVGPGAARVQVTADIDMTRSTTQEQKYDPDGQVV 280 Query: 286 RSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSI 345 RS + + T + T N+P + S E+ + E +NYEI+ + Sbjct: 281 RSTSTNGTQSQDTTGVADGGATATNNIPGGAAPATTPAGSTESANT--ETTNYEISNTTT 338 Query: 346 ATTHDNYKLERLSIAVVVNKGRLT---EVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402 T + ++++LS+AV V+ G+LT E G + + + +I +V AA G N R Sbjct: 339 TTVKEPGEVKKLSVAVAVD-GKLTPAAEPGGEATYAPRTAEEITQIEDLVKAAMGFNEER 397 Query: 403 GDTITITSMDFLENQLFNSG 422 GD + +T++ F + L ++G Sbjct: 398 GDQVRVTNVRFNRDALVSAG 417 >gi|296531738|ref|ZP_06894564.1| flagellar M-ring protein FliF [Roseomonas cervicalis ATCC 49957] gi|296267937|gb|EFH13738.1| flagellar M-ring protein FliF [Roseomonas cervicalis ATCC 49957] Length = 472 Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 130/375 (34%), Positives = 201/375 (53%), Gaps = 13/375 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110 LY LE ++ RIS L E I +G+ I VP V + R+ LAA+GLP +G Sbjct: 56 LYAGLEPAEAGRISARLEELKIPVEARGDGT-ILVPMDQVARLRMQLAAEGLPRQG-GAG 113 Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170 YEL D+ + +TSFMQ + R+RALEGE+ARTI ++ G+ AARVHIV+P+ SF + Sbjct: 114 YELLDQTSPMQMTSFMQRVQRLRALEGELARTIVTMQGVRAARVHIVLPERESFSRDAPP 173 Query: 171 PTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG 228 PTASV + +A+ AIR LVA AVP L DV+V+D G +L A+ G Sbjct: 174 PTASVTVTTSAGQRLGAAQAAAIRLLVAGAVPRLRQEDVSVMDGNGVVLAADGGMGAAAG 233 Query: 229 KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288 + I A +H ++ + L +G R+ E+ R +DP +VER Sbjct: 234 RLGEIRVAQEHALQKAVLDLLEPLVGRGKVRAVASVEVEGARTVARAETFDPLGQVERGR 293 Query: 289 RLSKDAQRSETSQPESAVTVEQNMP--HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346 +L + + SE + ++ VTV QN+P V+ RS+ + E N+EI++K Sbjct: 294 QLQTEQENSEDGRGQAPVTVGQNLPNQQVNQNAT---RSVSAVQRNNETVNFEISSKVEE 350 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 T + ++R+S+AVVV+ +T+ G Q + + L + +V +A G N +RGDT+ Sbjct: 351 TVREPGAVKRVSVAVVVDG--ITDAEGNV--QPRPPAELERLAALVRSAVGYNQQRGDTV 406 Query: 407 TITSMDFLENQLFNS 421 T+ ++ FL ++ + Sbjct: 407 TVDTLRFLPDEGLGT 421 >gi|328542763|ref|YP_004302872.1| flagellar M-ring protein [polymorphum gilvum SL003B-26A1] gi|326412509|gb|ADZ69572.1| Flagellar M-ring protein [Polymorphum gilvum SL003B-26A1] Length = 538 Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 128/417 (30%), Positives = 221/417 (52%), Gaps = 18/417 (4%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++ L++F ++ LG TR+ + +V + I +F F V +P LY L + D + I Sbjct: 1 MNGLVEFIRT---LGPTRVAAMGAVAAILIGVFAFIIFRVTAPQMTQLYSDLTLEDSSAI 57 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L I F + +G++I +P V + R+ LA +GLP+ S GYE+FD+ ++ G T Sbjct: 58 VNQLESLGIPFELKRDGATIMIPKEQVARVRMRLAEEGLPTGGS-IGYEIFDRSDTLGAT 116 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 SF+Q I +RA+EGE+ARTI+S+ IV+ARVH+V+P+ F++ P+AS+ I+ Sbjct: 117 SFVQNINHLRAMEGELARTIRSLDRIVSARVHLVIPERQLFQRDRRPPSASIAIKTRGSL 176 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSL-----SIVQA 236 AI+HLVAAAV L V+++D TG+LL ++E I+ SL I Q Sbjct: 177 GQNEIRAIQHLVAAAVDGLGPERVSIVDDTGRLLATGSDESAEGIVASSLQERTFEIEQR 236 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 ++++IE +N + +G R V AE++ + +DP+ +V RS + +++ Sbjct: 237 LKNQIEEILN----SVVGPGRARVRVAAEVDFNRITETSEKFDPEGQVVRSTQSKEESST 292 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 S + Q + VTV +P+ ++ E ++ EE N+EI+ + +++R Sbjct: 293 SISRQ--AGVTVGNQIPN-AEADAGEGGDREGSNLAEEIVNFEISKSVRTEVVEAGRIKR 349 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 LS+AV+V+ G + L I +V +A G ++ RGD + + ++ F Sbjct: 350 LSVAVLVDGVYSPNESGEVQYAPRTQEVLDRIAVLVRSAVGFDAARGDVVEVVNLRF 406 >gi|85713555|ref|ZP_01044545.1| flagellar M-ring protein [Nitrobacter sp. Nb-311A] gi|85699459|gb|EAQ37326.1| flagellar M-ring protein [Nitrobacter sp. Nb-311A] Length = 541 Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 131/422 (31%), Positives = 210/422 (49%), Gaps = 33/422 (7%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 LL F K LG +R++ + +V V I F V +P L+ L V D + I Sbjct: 4 LLAFLKG---LGASRLMAMVAVTTVLIAFFAFVIMRVTTPQMTTLFTDLSVEDSSGIIKD 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L I F + ++G+ I VP V + R+ LA GLP GYE+FDK ++ G TSF+ Sbjct: 61 LERQAIPFELRNDGAVIMVPKDKVTRLRMKLAEAGLPKGG-GVGYEIFDKSDALGTTSFV 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 Q I R+RALEGE+ARTI++I I ARVH+V+P+ F + +P+AS+++R + Sbjct: 120 QNINRLRALEGELARTIRAIDRIQDARVHLVLPERPLFTREAPQPSASIVVRVRGGLEPQ 179 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-----------TANEMERNILGKSLSIVQ 235 AIRHLVA+AV L V+++D TG+LL T +E + S V+ Sbjct: 180 QIRAIRHLVASAVNGLKPQRVSIVDETGQLLADGSTTDADGVTGDERRTAFEKRMRSQVE 239 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI--VYDPDSKVERSIRLSKD 293 AI + V N R+ V + D +I + +DP+ +V RS + ++ Sbjct: 240 AIVSSV-------------VGNGRARVQLSADFDYNKITQTSDTFDPEGRVLRSSQTREE 286 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 + S T+ VTV +P P ++ + + K EE +NYEI+ + + + Sbjct: 287 S--SLTADNNGQVTVNNELPGNQPSDNP-NQARDQSKKSEETNNYEISRTTKTEVSEAGR 343 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 + R+S+AV+V+ + G+ + L I +V +A G + +RGD + + ++ F Sbjct: 344 VNRISVAVLVDGTYAKDDKGQMVYTERSKEQLDRIATLVRSAIGFDQKRGDQVEVVNLRF 403 Query: 414 LE 415 E Sbjct: 404 AE 405 >gi|206558926|ref|YP_002229686.1| flagellar MS-ring protein [Burkholderia cenocepacia J2315] gi|198034963|emb|CAR50835.1| flagellar M-ring protein FliF [Burkholderia cenocepacia J2315] Length = 587 Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 118/390 (30%), Positives = 196/390 (50%), Gaps = 24/390 (6%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y LY L D I AL +AN+ ++ +D G +I VPS+ V + R+ LAA Sbjct: 78 LWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSNQVHETRLKLAAM 137 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S G+EL D FG++ F ++I RALEGE+ RTI+SI+ + ARVH+ +P Sbjct: 138 GLPKGGS-VGFELMDN-QKFGISQFAEQINYQRALEGELQRTIESINAVRGARVHLAIPK 195 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + V +AI +V++ VP++ +VT++D G LLT Sbjct: 196 PSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGNLLT 255 Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 + L VQ ++H + I+ LA G N RS V A+L+ + Y Sbjct: 256 QTASASGLDASQLKYVQQVEHNTQKRIDAILAPIFGAGNARSQVSADLDFSKIEQTSESY 315 Query: 279 DPDSKVER-SIRLSKDAQRSETSQ--------------PESAVTVEQNMPHVSDRKVPLP 323 P+ ++ +IR + + +E +Q P+ A + P V+ P Sbjct: 316 GPNGTPQQAAIRSQQTSSATELAQGGASGVPGALSNTPPQPA-----SAPIVAGNGQNAP 370 Query: 324 RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS 383 ++ +D+K++ +NYE++ T ++RLS+AVVVN + + G Q + Sbjct: 371 QTTPVSDRKDQTTNYELDKTIRHTEQPMGSVKRLSVAVVVNYQPVADAKGHVTMQPLPPA 430 Query: 384 YLAEINKIVSAATGINSRRGDTITITSMDF 413 LA++ ++V A G + +RGD++ + + F Sbjct: 431 KLAQVEQLVKDAMGYDEKRGDSVNVVNSAF 460 >gi|107023995|ref|YP_622322.1| flagellar MS-ring protein [Burkholderia cenocepacia AU 1054] gi|116691082|ref|YP_836705.1| flagellar MS-ring protein [Burkholderia cenocepacia HI2424] gi|170734416|ref|YP_001766363.1| flagellar MS-ring protein [Burkholderia cenocepacia MC0-3] gi|105894184|gb|ABF77349.1| flagellar M-ring protein FliF [Burkholderia cenocepacia AU 1054] gi|116649171|gb|ABK09812.1| flagellar M-ring protein FliF [Burkholderia cenocepacia HI2424] gi|169817658|gb|ACA92241.1| flagellar M-ring protein FliF [Burkholderia cenocepacia MC0-3] Length = 587 Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 118/390 (30%), Positives = 196/390 (50%), Gaps = 24/390 (6%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y LY L D I AL +AN+ ++ +D G +I VPS V + R+ LAA Sbjct: 78 LWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSGQVHETRLKLAAM 137 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S G+EL D FG++ F ++I RALEGE+ RTI+SI+ + ARVH+ +P Sbjct: 138 GLPKGGS-VGFELMDN-QKFGISQFAEQINYQRALEGELQRTIESINAVRGARVHLAIPK 195 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + V +AI +V++ VP++ +VT++D G LLT Sbjct: 196 PSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGNLLT 255 Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 + L VQ ++H + I+ LA G N RS V A+L+ + Y Sbjct: 256 QTASASGLDASQLKYVQQVEHNTQKRIDAILAPIFGAGNARSQVSADLDFSKIEQTSESY 315 Query: 279 DPDSKVER-SIRLSKDAQRSETSQ--------------PESAVTVEQNMPHVSDRKVPLP 323 P+ ++ +IR + + +E +Q P+ A + P V+ P Sbjct: 316 GPNGTPQQAAIRSQQTSSATELAQGGASGVPGALSNTPPQPA-----SAPIVAGNGQNGP 370 Query: 324 RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS 383 ++ +D+K++ +NYE++ T ++RLS+AVVVN + + G Q + Sbjct: 371 QTTPVSDRKDQTTNYELDKTIRHTEQPMGSVKRLSVAVVVNYQPVADAKGHVTMQPLPPA 430 Query: 384 YLAEINKIVSAATGINSRRGDTITITSMDF 413 LA++ ++V A G +++RGD++ + + F Sbjct: 431 KLAQVEQLVKDAMGYDAKRGDSVNVVNSAF 460 >gi|254246925|ref|ZP_04940246.1| Flagellar biosynthesis/type III secretory pathway lipoprotein [Burkholderia cenocepacia PC184] gi|124871701|gb|EAY63417.1| Flagellar biosynthesis/type III secretory pathway lipoprotein [Burkholderia cenocepacia PC184] Length = 587 Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 118/390 (30%), Positives = 195/390 (50%), Gaps = 24/390 (6%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y LY L D I AL +AN+ ++ +D G +I VPS V + R+ LAA Sbjct: 78 LWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSGQVHETRLKLAAM 137 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S G+EL D FG++ F ++I RALEGE+ RTI+SI+ + ARVH+ +P Sbjct: 138 GLPKGGS-VGFELMDN-QKFGISQFAEQINYQRALEGELQRTIESINAVRGARVHLAIPK 195 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + V +AI +V++ VP++ +VT++D G LLT Sbjct: 196 PSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGNLLT 255 Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 + L VQ ++H + I+ LA G N RS V A+L+ + Y Sbjct: 256 QTASASGLDASQLKYVQQVEHNTQKRIDAILAPIFGAGNARSQVSADLDFSKIEQTSESY 315 Query: 279 DPDSKVER-SIRLSKDAQRSETSQ--------------PESAVTVEQNMPHVSDRKVPLP 323 P+ ++ +IR + + +E +Q P+ A + P V+ P Sbjct: 316 GPNGTPQQAAIRSQQTSSATELAQGGASGVPGALSNTPPQPA-----SAPIVAGNGQNGP 370 Query: 324 RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS 383 ++ +D+K++ +NYE++ T ++RLS+AVVVN + + G Q + Sbjct: 371 QTTPVSDRKDQTTNYELDKTIRHTEQPMGSVKRLSVAVVVNYQPVADAKGHVTMQPLPPA 430 Query: 384 YLAEINKIVSAATGINSRRGDTITITSMDF 413 LA++ ++V A G + +RGD++ + + F Sbjct: 431 KLAQVEQLVKDAMGYDEKRGDSVNVVNSAF 460 >gi|332702978|ref|ZP_08423066.1| flagellar M-ring protein FliF [Desulfovibrio africanus str. Walvis Bay] gi|332553127|gb|EGJ50171.1| flagellar M-ring protein FliF [Desulfovibrio africanus str. Walvis Bay] Length = 533 Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 133/451 (29%), Positives = 226/451 (50%), Gaps = 27/451 (5%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L++L F+ + R I LA+ ++V +L + ++N P Y LY L D R+ Sbjct: 9 LNKLTAFWSDRSMAQRVMIGGLAASLVVIFLLLIV---WLNQPDYKILYSNLPPEDAGRV 65 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + L + ID+++ D+G ++ VPS V + R+ +A +GL + G+ELFD+V G T Sbjct: 66 AEQLKKQKIDYKLEDSGKTVLVPSDQVYQLRLDMAGEGL-LHGTGLGFELFDEVK-IGQT 123 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----R 178 F+Q I RAL+GE++RTI + ARVHIVMP F + + PTAS+++ R Sbjct: 124 DFVQRINYQRALQGELSRTITEFPEVERARVHIVMPHKSLFIEEQSPPTASIILKLAEGR 183 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ--- 235 +N K EAI +LV+ +V LD +TV D GKLL + + ++ G +L ++ Sbjct: 184 ELN---QKQIEAIVNLVSLSVEGLDKSQITVADVAGKLLFQADSDDSVKGLTLGQLEYRT 240 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 +Q +E I + L +GV + V A+++ + I + +YDP S V RS Q Sbjct: 241 TLQRNLEQRIEQLLTPVVGVGKVIARVNADVDFSQKTITKDIYDPSSAVVRS------EQ 294 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEE--QSNYEINTKSIATTHDNYK 353 R+E Q + +E P + R SL + D E +N+EIN + + + Sbjct: 295 RTE-EQTKGRANIEGGEPDPNFRGDGFNGSLSSQDSNRETRTTNFEINKEQQSIVVPVGE 353 Query: 354 LERLSIAVVVNKGRL--TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 ++RLS+AV+V+ E G + + I ++V G + RGD I ++++ Sbjct: 354 IDRLSVAVIVDGTWQAPAEGEGEPVWVPRSQEEIQRITELVRNTVGFSQSRGDAIEVSNI 413 Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINA 442 F E +F ++ + ++ + R ++N Sbjct: 414 SFGEPDMFGEPSLMQTMLEYMQRLGKPILNG 444 >gi|148260475|ref|YP_001234602.1| flagellar M-ring protein FliF [Acidiphilium cryptum JF-5] gi|146402156|gb|ABQ30683.1| flagellar M-ring protein FliF [Acidiphilium cryptum JF-5] Length = 520 Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 121/415 (29%), Positives = 215/415 (51%), Gaps = 9/415 (2%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-NLYVKLEVSDVNRISVAL 67 Q + +LG ++ + +V V ++ MAA P LY L + D + I+ L Sbjct: 3 QLIANLRALGPVKLGAMGAVA-VAVLGLMAALVLTGGPSPSATLYSGLGLKDASHITETL 61 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 A+I + I + G S+ V + + +AR+ LA LP+ SSN G+ +FD N +SF+ Sbjct: 62 KAAHIRYAIGNGGHSVLVTPAQLDEARLLLAQHNLPAGSSN-GFAIFDHKNPLLGSSFLN 120 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--AINPSVY 185 I RAL+ E+ RTI I G+ A+RV +V+P F A ASVM+ + P + Sbjct: 121 RIDETRALDSELERTINLIHGVEASRVQVVLPRRDEFSLNTAPAQASVMLSLAGVGPLDH 180 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILG-KSLSIVQAIQHEIEM 243 +S EAI +LVA+AVP L +++++D+ G LL A + ++L + ++ Q+ + ++ Sbjct: 181 ESVEAILNLVASAVPGLKPNNISIVDNRGDLLAQAGRTDNSLLSSRDAALKQSTERQLSE 240 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 + LAA +G + R ++ D + Y+P+ +V RS + ++ ++ S +S Sbjct: 241 AVRSMLAAVVGPNQVRVVTAVSMDFDRSEQTSTTYNPNGQVVRSQQQTR-SKSSRSSGTN 299 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 V+V N+P + K P+ L+ K + +NYEI+ H ++ R+S+AV++ Sbjct: 300 KTVSVSNNLPGATSSKAG-PKRLDTQSKSTQTTNYEISQDVKHIVHATPQITRISVAVML 358 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 + + T G+ + + +A+I K+V A G + RGD + + S+ F N+L Sbjct: 359 DDVKTTNPKGKVIWTPRSPAQVAQIRKLVETAIGYDKSRGDVVDVQSLQFAPNEL 413 >gi|326403668|ref|YP_004283750.1| flagellar M-ring protein FliF [Acidiphilium multivorum AIU301] gi|325050530|dbj|BAJ80868.1| flagellar M-ring protein FliF [Acidiphilium multivorum AIU301] Length = 520 Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 121/415 (29%), Positives = 215/415 (51%), Gaps = 9/415 (2%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-NLYVKLEVSDVNRISVAL 67 Q + +LG ++ + +V V ++ MAA P LY L + D + I+ L Sbjct: 3 QLIANLRALGPVKLGAMGAVA-VAVLGLMAALVLTGGPSPSATLYSGLGLKDASHITETL 61 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 A+I + I + G S+ V + + +AR+ LA LP+ SSN G+ +FD N +SF+ Sbjct: 62 KAAHIRYAIGNGGHSVLVTPAQLDEARLLLAQHNLPAGSSN-GFAIFDHKNPLLGSSFLN 120 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--AINPSVY 185 I RAL+ E+ RTI I G+ A+RV +V+P F A ASVM+ + P + Sbjct: 121 RIDETRALDSELERTINLIHGVEASRVQVVLPRRDEFSLSTAPAQASVMLSLAGVGPLDH 180 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILG-KSLSIVQAIQHEIEM 243 +S EAI +LVA+AVP L +++++D+ G LL A + ++L + ++ Q+ + ++ Sbjct: 181 ESVEAILNLVASAVPGLKPNNISIVDNRGDLLAQAGRTDNSLLSSRDAALKQSTERQLSE 240 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 + LAA +G + R ++ D + Y+P+ +V RS + ++ ++ S +S Sbjct: 241 AVRSMLAAVVGPNQVRVVTAVSMDFDRSEQTSTTYNPNGQVVRSQQQTR-SKSSRSSGTN 299 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 V+V N+P + K P+ L+ K + +NYEI+ H ++ R+S+AV++ Sbjct: 300 KTVSVSNNLPGATSSKAG-PKRLDTQSKSTQTTNYEISQDVKHIVHATPQITRISVAVML 358 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 + + T G+ + + +A+I K+V A G + RGD + + S+ F N+L Sbjct: 359 DDVKTTNPKGKVIWTPRSPAQVAQIRKLVETAIGYDKSRGDVVDVQSLQFAPNEL 413 >gi|220925883|ref|YP_002501185.1| flagellar MS-ring protein [Methylobacterium nodulans ORS 2060] gi|219950490|gb|ACL60882.1| flagellar M-ring protein FliF [Methylobacterium nodulans ORS 2060] Length = 541 Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 120/419 (28%), Positives = 213/419 (50%), Gaps = 17/419 (4%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +LD + +F G R+ + +V L + F V+ P LY L + D + Sbjct: 4 VLDLVAKF-------GPARLAAMGAVTLTLVGFFAFVILRVSRPEMGVLYADLSMQDASA 56 Query: 63 ISVALSEANIDFRI-SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 + L + + + G +I P + + + R+ LA +GLPS+ GYE+FDK ++F Sbjct: 57 VIRDLDARGLRYETRGEMGQTILAPRADLARLRMDLAGKGLPSAG-GVGYEIFDKGDAFS 115 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 T+F+Q + +RALEGE+AR+I++I + AAR+H+V+P+ F + P+A+++++ Sbjct: 116 STTFVQNVNHLRALEGELARSIRAIGRVQAARIHLVIPEKRLFARDREPPSAAIVLKLSG 175 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK-SLSIVQA-IQH 239 A+RHLVA++V L ++++D G+LL + G+ L QA ++H Sbjct: 176 DLDPGQVRAVRHLVASSVEGLKPDRISIVDERGRLLADGAKPEDAQGRLGLDERQANLEH 235 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 + + +A +G R V AEL+ + + R +DP+S+V RS + + Q+S+ Sbjct: 236 RLRAQVEGIVAGIVGSGRARVQVAAELDANRIESRSETFDPESRVVRSTQTRSETQQSQG 295 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPR--SLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 E+ V+V +P D P + + E ++K EE +NYEI+ + ++ ++ RL Sbjct: 296 PG-ETGVSVGNELPGARD---PAQQNGTREASNKNEETTNYEISRVTRTEINEGGRIRRL 351 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 S+AVV++ GR + L I +V A G + RGD I + ++ F E Sbjct: 352 SVAVVIDGTYTPGPDGRPVYAPRPQDELDRITALVRTAVGYDKARGDQIEVVNLRFAEG 410 >gi|167579440|ref|ZP_02372314.1| flagellar MS-ring protein [Burkholderia thailandensis TXDOH] Length = 518 Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 118/391 (30%), Positives = 193/391 (49%), Gaps = 27/391 (6%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 78 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 137 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++S++ + AARVH+ +P Sbjct: 138 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESVNAVRAARVHLAIPKP 195 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ V + AI LV+++VP++ +VT++D G LLT Sbjct: 196 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAITRLVSSSVPDMPAKNVTIVDQDGNLLTQ 255 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 256 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYA 315 Query: 280 PDSKVERS-IRLSKDAQRSE----------------TSQPESAVTVEQNMPHVSDRKVPL 322 P+ ++S IR + + +E QP SA V N + P+ Sbjct: 316 PNGTPQQSAIRSQQTSTSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAAPAATPV 375 Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382 +D+K+ +NYE++ ++RLS+AVVVN T+ GR Q Sbjct: 376 ------SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLTA 429 Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413 LA++ ++V A G + +RGD++ + + F Sbjct: 430 DKLAQVQQLVKDAMGYDEKRGDSVNVVNSAF 460 >gi|167617536|ref|ZP_02386167.1| flagellar MS-ring protein [Burkholderia thailandensis Bt4] Length = 594 Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 118/391 (30%), Positives = 193/391 (49%), Gaps = 27/391 (6%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 78 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 137 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++S++ + AARVH+ +P Sbjct: 138 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESVNAVRAARVHLAIPKP 195 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ V + AI LV+++VP++ +VT++D G LLT Sbjct: 196 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAITRLVSSSVPDMPAKNVTIVDQDGNLLTQ 255 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 256 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYA 315 Query: 280 PDSKVERS-IRLSKDAQRSE----------------TSQPESAVTVEQNMPHVSDRKVPL 322 P+ ++S IR + + +E QP SA V N + P+ Sbjct: 316 PNGTPQQSAIRSQQTSTSTELAQSGTSGVPGALSNTPPQPASAPIVASNGQPAAPAATPV 375 Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382 +D+K+ +NYE++ ++RLS+AVVVN T+ GR Q Sbjct: 376 ------SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLTA 429 Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413 LA++ ++V A G + +RGD++ + + F Sbjct: 430 DKLAQVQQLVKDAMGYDEKRGDSVNVVNSAF 460 >gi|186477678|ref|YP_001859148.1| flagellar MS-ring protein [Burkholderia phymatum STM815] gi|184194137|gb|ACC72102.1| flagellar M-ring protein FliF [Burkholderia phymatum STM815] Length = 593 Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 121/394 (30%), Positives = 199/394 (50%), Gaps = 26/394 (6%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y LY + D I AL +AN+ ++ S+ G +I +P+ V + R+ LA+Q Sbjct: 81 LWSRAPDYKVLYSNVSDQDGGAIVAALQQANVPYKFSEAGGAILIPADQVHEMRLRLASQ 140 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S S G+EL D FG++ F ++I RALEGE+ RTI+SIS + ARVH+ +P Sbjct: 141 GLPKSGS-VGFELMDN-QKFGISQFAEQINYQRALEGELQRTIESISTVKTARVHLAIPK 198 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV++ + + AI H+VA+AVP++ + VT++D G LLT Sbjct: 199 PTVFVRDREAPSASVLVNLYPGRMLDEGQVVAITHMVASAVPDMSVRGVTIVDQDGNLLT 258 Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 A + L Q I+ + I+ L G N S+V A+++ Q++ Sbjct: 259 QAGANGAGLDATQLKYRQQIERNTQQRIDAILGPMFGTGNAHSSVSADIDFSRQELTSEK 318 Query: 278 YDPDSKVER-SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT------- 329 Y P++ ++ +IR + + +E SQ ++ +P + P P S T Sbjct: 319 YAPNNDPQQAAIRSQQTSTATEMSQSGAS-----GVPGALSNQPPQPASAPITASANGAS 373 Query: 330 --------DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI 381 D K+ +NYE++ T ++RLS+AVVVN R+ + G + Q Sbjct: 374 GVTTTPISDHKDSTTNYELSKTVSHTEAAVGGIKRLSVAVVVNYMRVFDAKGHATMQPIS 433 Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 LA+++++V A G + RGDT+ + S F + Sbjct: 434 ADKLAQVDQLVKEAMGYDQARGDTVKVISSAFQQ 467 >gi|295678025|ref|YP_003606549.1| flagellar M-ring protein FliF [Burkholderia sp. CCGE1002] gi|295437868|gb|ADG17038.1| flagellar M-ring protein FliF [Burkholderia sp. CCGE1002] Length = 598 Score = 174 bits (440), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 131/441 (29%), Positives = 213/441 (48%), Gaps = 28/441 (6%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y LY L D I AL +ANI +++S++G+++ VP+ V + R+ LA+Q Sbjct: 85 LWSRAPSYKVLYSNLSDRDGGSIITALQQANIPYKLSESGTAVLVPAEQVHETRLRLASQ 144 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S S G+EL D FG++ F +++ RALEGE+ RTI SIS + +ARVH+ +P Sbjct: 145 GLPKSGS-VGFELMDN-QKFGISQFDEQVNYQRALEGELERTIGSISSVKSARVHLAIPK 202 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV++ V + AI H+VA+AVP + + VT+LD G LLT Sbjct: 203 PSVFVRDKEPPSASVLVNLYPGRVLDEGQVVAITHMVASAVPQMPVRGVTILDQDGNLLT 262 Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 + L Q I+ + I+ LA G N RS V A+++ + Y Sbjct: 263 QPTNGSGLDATQLKFRQQIERNTQQRIDTILAPLFGAGNARSQVSADIDFSHSEQTSEKY 322 Query: 279 DPDSKVE-RSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRS------------ 325 P++ + +IR + + +E SQ ++ +P + P P S Sbjct: 323 GPNANPQDAAIRSQQTSSATEMSQGGAS-----GVPGALSNQPPQPASAPIVAGNGASSV 377 Query: 326 --LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS 383 +D K+ +NYE++ + RL++AVVVN R+ + G Q Sbjct: 378 STTPISDHKDSTTNYELDKTVRHIDQPMGGIRRLTVAVVVNYMRVVDPKGHVTMQPVSAD 437 Query: 384 YLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS--RHFATVIN 441 LA+I ++V A G ++ RGD++ + + F + N+ D+L+ + AT + Sbjct: 438 KLAQITQLVKDAMGYDASRGDSVNVVNSAFTTDLDPNADLPWWRTPDMLALYKQIATYLG 497 Query: 442 ALVFLVGTLLVTFLGLHALRR 462 + V L + ALRR Sbjct: 498 --IGAVALFLYFVMVKPALRR 516 >gi|77165822|ref|YP_344347.1| flagellar FliF M-ring protein [Nitrosococcus oceani ATCC 19707] gi|254434642|ref|ZP_05048150.1| flagellar M-ring protein FliF [Nitrosococcus oceani AFC27] gi|76884136|gb|ABA58817.1| Flagellar FliF M-ring protein [Nitrosococcus oceani ATCC 19707] gi|207090975|gb|EDZ68246.1| flagellar M-ring protein FliF [Nitrosococcus oceani AFC27] Length = 567 Score = 174 bits (440), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 126/419 (30%), Positives = 218/419 (52%), Gaps = 45/419 (10%) Query: 22 ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81 + I ASV LV + +FM + +P Y +Y + + I AL +ANI++R+++N Sbjct: 45 LAIAASVALV-VGIFM----WSWAPTYQVMYGAVTGKEKGEIVAALQKANIEYRLAENTG 99 Query: 82 SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 +I VP+S V + R+ LA +GLP S+ ++G+EL ++ FG + F+++ RALEGE+AR Sbjct: 100 AIMVPASKVHEVRLQLAMEGLPRSA-DTGFELLEQNPGFGASEFLEKARYQRALEGELAR 158 Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVA 196 TI +++ + ARVH+ +P F + P+ASV++ R ++P AI HLVA Sbjct: 159 TIGALNNVRNARVHLALPKQSVFIRNRRAPSASVVLDLYAGRTLDPG---QVAAITHLVA 215 Query: 197 AAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQA-------IQHEIEMNINKAL 249 +++PNL+ VT++D G LLT R +SL + + ++ + I L Sbjct: 216 SSIPNLESSGVTLVDQRGNLLT-----RQDRSQSLGMTEGQFEHTRRLEEKYISRIQHIL 270 Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309 A +G + R+ VVAE++ + + Y+P S RS ++S++ +R+ + P+ Sbjct: 271 APMIGSNKVRAQVVAEVDFTVTEQTQEYYNPGSAALRSEQMSEE-ERTGSRLPQGIPGAL 329 Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE-------------- 355 N P + P ++ + E Q T+S T NY+L+ Sbjct: 330 SNQPPADAQA---PETVPEANGDEAQIEPVPTTRSQRATR-NYELDRTISHSRLSPGSIR 385 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 RLS+AV+V++ +T+ G + + LA++ +V A G N+ RGDTI + + F+ Sbjct: 386 RLSVAVLVDEKAVTDAEGAVSTLPRSPQELAQVTALVKEAVGFNAERGDTINVINAPFV 444 >gi|296534177|ref|ZP_06896667.1| flagellar M-ring protein FliF [Roseomonas cervicalis ATCC 49957] gi|296265497|gb|EFH11632.1| flagellar M-ring protein FliF [Roseomonas cervicalis ATCC 49957] Length = 525 Score = 174 bits (440), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 131/424 (30%), Positives = 210/424 (49%), Gaps = 28/424 (6%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 +LG R+ LA L+ + L + LY L+ D +I AL A + +R Sbjct: 42 ALGTARLAALAFTGLLTLGLIGFLTLRTATTPMGLLYGDLDQRDAAQIVAALERARVPYR 101 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135 + NG+ + P + + R+ LA GLP+ S GYE+FD+ + T F Q+I R+RAL Sbjct: 102 LGRNGTEVLAPEEDIPRLRLSLARDGLPAGGS-VGYEIFDRQSGLTTTPFQQDINRLRAL 160 Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI--RAINPSVYKSAEAIRH 193 EGEIAR+I+ + G+ +ARVH+V+P F + ASV++ R I+ + +A+ H Sbjct: 161 EGEIARSIRGLDGVASARVHLVLPRREPFSRERGESQASVVLQMRGIHRLDREGVQAVLH 220 Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKA---- 248 LVAAAVP L ++ V+D G+LL+ + N L +S + I+ EM + +A Sbjct: 221 LVAAAVPGLKPQNIAVVDGRGELLSRGGQAGANGLAQS---QEEIRRGQEMRMARAVEEM 277 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308 L LG R+ E++ D Q E +DP+++V RS++S ES+ Sbjct: 278 LERILGPGRVRAEATIEMDHDRVQTTEERFDPENQVP----------RSQSSVNESSRNG 327 Query: 309 EQNMPHVSDRKVPLPRSLENTD------KKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 EQ V+++ P + +N+ ++EE NYEI + T D + RLS+AV+ Sbjct: 328 EQQNVSVANQLPGAPPAQQNSGPQSQEARQEETVNYEIGRTTRNTLRDQPVVRRLSVAVL 387 Query: 363 VNK-GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 V+ E G + + + + I+ +V A G N RGD + + S+ F E + Sbjct: 388 VDGVWEPGEAGGAARFRERTPQEMERISALVRGAIGFNETRGDRLEVVSLRFAEPVWGSD 447 Query: 422 GTVQ 425 G Q Sbjct: 448 GESQ 451 >gi|114777411|ref|ZP_01452408.1| flagellar M-ring protein FliF [Mariprofundus ferrooxydans PV-1] gi|114552193|gb|EAU54695.1| flagellar M-ring protein FliF [Mariprofundus ferrooxydans PV-1] Length = 547 Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 154/546 (28%), Positives = 264/546 (48%), Gaps = 60/546 (10%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 R + I AS++L F+ + + Y +Y +E D + L + +I +R+ + Sbjct: 43 RLMLFIAASLMLAG---FIGLVLWSSEKPYRAVYAGMEEKDAATVVEMLQKEHIPYRL-E 98 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 G ++ VP V + R+ LA QG+ + SGYELFDK N FGL+ F ++I RA++GE Sbjct: 99 GGGTVMVPEDQVYEVRMKLAGQGI-NPRGTSGYELFDKSNEFGLSDFTRKINLQRAMQGE 157 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195 +ARTI+ + + AARVH+V+P +F + TASVM++ ++ S S AI++LV Sbjct: 158 LARTIEVMPQVSAARVHLVLPKESAFADRDRKATASVMLQ-LSGSQRLSKNTVLAIQNLV 216 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMER-NILGKSLSIVQA-IQHEIEMNINKALAAFL 253 A++V +++ DVTV+D++G LL+++E E + G++L Q+ ++ +E + L + Sbjct: 217 ASSVAEMNVADVTVVDASGTLLSSSEKETPSSEGQTLQEYQSKLEQRLEQRLTGMLEQIV 276 Query: 254 GVDNFRSAVVAELN---MDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ----PESAV 306 G V A+++ +D Q R Y+PD +V RS + ++ S +S P A Sbjct: 277 GEGQSVVRVSADIDREFIDQQSTR---YNPDEQVLRSRKSIVESHTSSSSGAMGVPGLAS 333 Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQ-SNYEINTKSIATTHDNYKLERLSIAVVVNK 365 + P S++ P NT K+ E +NYEI++ S +++LS+A +V Sbjct: 334 NTPGSNPATSNKTAAAPSQPGNTAKRNEDVNNYEISSTSEHRVVPFGNIKKLSVAAIVGG 393 Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425 T+ G + + LAEI K+V +A G + RGD++T+ SM ++ +S Sbjct: 394 HMQTDAKGVQTFVPRSRAELAEIQKLVESAMGYDEDRGDSVTVQSMPLMD---ISSSADT 450 Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN--IDDAKKGEVGGKSILSPP 483 + +R F + A + + L + LG LR L D + GK P Sbjct: 451 AALDKAEARVF--YMKAARYGIAALALMLLGWFVLRPLAKRIQDSTPHDQTAGK----PA 504 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 P++ + L S ++ ++S IE+ ER Sbjct: 505 PVTP-----------LHLSDSTYKRLANMEQVRSS----------------IELQPERAT 537 Query: 544 KILRKW 549 K+LR+W Sbjct: 538 KVLREW 543 >gi|284159411|ref|YP_440758.3| flagellar MS-ring protein [Burkholderia thailandensis E264] gi|83653465|gb|ABC37528.1| flagellar M-ring protein FliF [Burkholderia thailandensis E264] Length = 677 Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 118/391 (30%), Positives = 193/391 (49%), Gaps = 27/391 (6%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 161 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 220 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++S++ + AARVH+ +P Sbjct: 221 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESVNAVRAARVHLAIPKP 278 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ V + AI LV+++VP++ +VT++D G LLT Sbjct: 279 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAITRLVSSSVPDMPAKNVTIVDQDGNLLTQ 338 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 339 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYA 398 Query: 280 PDSKVERS-IRLSKDAQRSE----------------TSQPESAVTVEQNMPHVSDRKVPL 322 P+ ++S IR + + +E QP SA V N + P+ Sbjct: 399 PNGTPQQSAIRSQQTSTSTELAQSGTSGVPGALSNTPPQPASAPIVASNGQPAAPAATPV 458 Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382 +D+K+ +NYE++ ++RLS+AVVVN T+ GR Q Sbjct: 459 ------SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLTA 512 Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413 LA++ ++V A G + +RGD++ + + F Sbjct: 513 DKLAQVQQLVKDAMGYDEKRGDSVNVVNSAF 543 >gi|167717602|ref|ZP_02400838.1| flagellar MS-ring protein [Burkholderia pseudomallei DM98] Length = 476 Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 117/391 (29%), Positives = 193/391 (49%), Gaps = 27/391 (6%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 44 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 103 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++SI+ + AARVH+ +P Sbjct: 104 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 161 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ V + A+ +V+++VP++ +VT++D G LLT Sbjct: 162 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 221 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 222 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 281 Query: 280 PDSKVERS-IRLSKDAQRSETS----------------QPESAVTVEQNMPHVSDRKVPL 322 P+ ++S IR + + +E + QP SA V N P+ Sbjct: 282 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 341 Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382 +D+K+ +NYE++ ++RLS+AVVVN T+ GR Q Sbjct: 342 ------SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAA 395 Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413 LA++ ++V A G + +RGD++ + + F Sbjct: 396 DKLAQVQQLVKDAMGYDEKRGDSVNVVNSAF 426 >gi|291617848|ref|YP_003520590.1| FliF [Pantoea ananatis LMG 20103] gi|291152878|gb|ADD77462.1| FliF [Pantoea ananatis LMG 20103] Length = 572 Score = 173 bits (439), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 150/557 (26%), Positives = 252/557 (45%), Gaps = 74/557 (13%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P+Y L+ L D I L++ N+ +R +DNG ++ VP V + R+ LA Q Sbjct: 47 LWAKTPNYSVLFSNLSNEDGGAIVTQLTQMNVPYRFADNGGALMVPEDKVHELRLRLAEQ 106 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP N G+EL DK FG++ F +++ RALEGE+ARTI+S+ + ARVH+ MP Sbjct: 107 GLPKGG-NVGFELLDK-EKFGISQFSEQVNYQRALEGELARTIESLGPVKTARVHLAMPK 164 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + P+ASV + RA++ +AI H+V+++V L G+VTV+D +G Sbjct: 165 PTLFVREQKAPSASVTLTLQPGRALDEG---QIQAITHMVSSSVAGLPPGNVTVVDQSGH 221 Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT ++ + R++ L ++ + I L LG N + V A++N DT + Sbjct: 222 LLTRSDAVGRDLNDAQLKYAAEVEARYQQRIEAILNPILGQGNVHAQVTAQINFDTSEQT 281 Query: 275 EIVYDPDSKVERSIRLSKDAQRSETS--------------QPESAVTVEQNMPHVSDRKV 320 + Y P+ + + S+ SE S QP A T N P+ + Sbjct: 282 DEKYQPNGDPKNASIRSQQTSTSEQSGSPYPGGVPGALSNQPAPANTAPVNAPNTNAANG 341 Query: 321 PL-----------------PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 S+ ++++ NYE++ T + ++RLS+AVVV Sbjct: 342 QNANGQNNAANGQRTSTASASSVPTNSRRDDTVNYELDRTIRHTKMNVGDVQRLSVAVVV 401 Query: 364 NKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 N R D+GK + L +I + A G + +RGD++ + N F Sbjct: 402 NY--------REDDKGKALALNEQQLKQIEDLTREAMGYSQQRGDSVNVV------NSQF 447 Query: 420 NSGTVQVSFMDILSRH--FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 N+ VS + + F +I+A +L+ LV F+ R H + + E G + Sbjct: 448 NTTEPTVSELPFWQQQSFFDQLISAGKWLL-VALVAFILYRKTVRPHVLRKKEAEESGCR 506 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 S P +A +G + + Q R +R+++ V Q R+ M E Sbjct: 507 SDGC--PCCTAKRSGSLQR------PAQQREMEQERKTNNRMSAEVMSQ---RIRDMSEN 555 Query: 538 NEERFAKILRKWARSEI 554 + A ++R+W +E+ Sbjct: 556 DPRVVALVIREWMGNEL 572 >gi|167892353|ref|ZP_02479755.1| flagellar MS-ring protein [Burkholderia pseudomallei 7894] Length = 495 Score = 173 bits (439), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 117/391 (29%), Positives = 192/391 (49%), Gaps = 27/391 (6%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 58 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 117 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++SI+ + AARVH+ +P Sbjct: 118 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 175 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ V + A+ +V+++VP++ +VT++D G LLT Sbjct: 176 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 235 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 236 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 295 Query: 280 PDSKVERS-IRLSKDAQRSE----------------TSQPESAVTVEQNMPHVSDRKVPL 322 P+ ++S IR + + +E QP SA V N P+ Sbjct: 296 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 355 Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382 +D+K+ +NYE++ ++RLS+AVVVN T+ GR Q Sbjct: 356 ------SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAA 409 Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413 LA++ ++V A G + +RGD++ + + F Sbjct: 410 DKLAQVQQLVKDAMGYDEKRGDSVNVVNSAF 440 >gi|167917106|ref|ZP_02504197.1| flagellar MS-ring protein [Burkholderia pseudomallei BCC215] Length = 490 Score = 173 bits (438), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 117/391 (29%), Positives = 192/391 (49%), Gaps = 27/391 (6%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 56 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 115 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++SI+ + AARVH+ +P Sbjct: 116 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 173 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ V + A+ +V+++VP++ +VT++D G LLT Sbjct: 174 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 233 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 234 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 293 Query: 280 PDSKVERS-IRLSKDAQRSE----------------TSQPESAVTVEQNMPHVSDRKVPL 322 P+ ++S IR + + +E QP SA V N P+ Sbjct: 294 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 353 Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382 +D+K+ +NYE++ ++RLS+AVVVN T+ GR Q Sbjct: 354 ------SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAA 407 Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413 LA++ ++V A G + +RGD++ + + F Sbjct: 408 DKLAQVQQLVKDAMGYDEKRGDSVNVVNSAF 438 >gi|167822258|ref|ZP_02453729.1| flagellar MS-ring protein [Burkholderia pseudomallei 9] Length = 488 Score = 173 bits (438), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 117/391 (29%), Positives = 192/391 (49%), Gaps = 27/391 (6%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 54 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 113 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++SI+ + AARVH+ +P Sbjct: 114 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 171 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ V + A+ +V+++VP++ +VT++D G LLT Sbjct: 172 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 231 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 232 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 291 Query: 280 PDSKVERS-IRLSKDAQRSE----------------TSQPESAVTVEQNMPHVSDRKVPL 322 P+ ++S IR + + +E QP SA V N P+ Sbjct: 292 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 351 Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382 +D+K+ +NYE++ ++RLS+AVVVN T+ GR Q Sbjct: 352 ------SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAA 405 Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413 LA++ ++V A G + +RGD++ + + F Sbjct: 406 DKLAQVQQLVKDAMGYDEKRGDSVNVVNSAF 436 >gi|167909065|ref|ZP_02496156.1| flagellar MS-ring protein [Burkholderia pseudomallei 112] Length = 573 Score = 173 bits (438), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 117/391 (29%), Positives = 192/391 (49%), Gaps = 27/391 (6%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 56 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 115 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++SI+ + AARVH+ +P Sbjct: 116 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 173 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ V + A+ +V+++VP++ +VT++D G LLT Sbjct: 174 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 233 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 234 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 293 Query: 280 PDSKVERS-IRLSKDAQRSE----------------TSQPESAVTVEQNMPHVSDRKVPL 322 P+ ++S IR + + +E QP SA V N P+ Sbjct: 294 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 353 Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382 +D+K+ +NYE++ ++RLS+AVVVN T+ GR Q Sbjct: 354 ------SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAA 407 Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413 LA++ ++V A G + +RGD++ + + F Sbjct: 408 DKLAQVQQLVKDAMGYDEKRGDSVNVVNSAF 438 >gi|78355400|ref|YP_386849.1| flagellar M-ring protein FliF [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217805|gb|ABB37154.1| flagellar M-ring protein FliF [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 539 Score = 173 bits (438), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 128/450 (28%), Positives = 236/450 (52%), Gaps = 19/450 (4%) Query: 21 RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80 R+ I+ ++V + +F F++N P Y LY KL D NR+ L + +R+ + G Sbjct: 23 RVFIVGLTVVV-VGIFFGLIFWINQPDYRVLYSKLTPEDANRVVTVLQAQKVRYRLDNGG 81 Query: 81 SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140 S+I VP+ V R+ +A +G G+E+FD++ G T F+Q+I RAL+GE++ Sbjct: 82 STIMVPADRVYDMRLMVAGEG-SVVGQGVGFEIFDQIK-VGQTDFVQKINYQRALQGELS 139 Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAA 198 RTI + +ARVH+V+P F + +P+ASV+++ + K +A+ +LV + Sbjct: 140 RTIAEFPAVESARVHLVIPHRSLFIEEQMQPSASVVLKLQDGKKMDEKDVQAVVNLVTMS 199 Query: 199 VPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ---AIQHEIEMNINKALAAFLGV 255 V LD G ++V D++GK+L + E+++ G + + ++ +Q E I + L +G Sbjct: 200 VEGLDQGKISVADTSGKILYYPKDEQSLDGMTSTQLEHKLTMQQNFERRIEELLYPVIGP 259 Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV 315 + V A+L+ + IR+ ++DP+S V RS +++A++ ++ V +P Sbjct: 260 GKVIAKVNADLDFSQKTIRKKLFDPESSVVRSEIRTEEARKGTSN-------VNAGVPEA 312 Query: 316 SDRKVPLP--RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG-RLTEVL 372 + R + S E+++++ +NYEIN + +L+RLS+AV+V+ E Sbjct: 313 NFRGDGMSGGTSTEDSNRETRNTNYEINEEEQNIIAPVGQLDRLSVAVIVDGTYEKNEET 372 Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDIL 432 G + D +A I ++V++A G + RGD + ++S+ F + ++ MD Sbjct: 373 GEWTYVPRSDEEVARIRQLVASAVGFDRARGDVLEVSSISFGGPEADTYMSLAEVIMDYA 432 Query: 433 SRHFATVINA-LVFLVGTLLVTFLGLHALR 461 R ++NA LVFL ++V + L +R Sbjct: 433 LRLGKPLLNALLVFLFLVMVVRPVVLALIR 462 >gi|126441455|ref|YP_001057275.1| flagellar MS-ring protein [Burkholderia pseudomallei 668] gi|217425051|ref|ZP_03456547.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 576] gi|254295774|ref|ZP_04963231.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 406e] gi|126220948|gb|ABN84454.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 668] gi|157805913|gb|EDO83083.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 406e] gi|217392071|gb|EEC32097.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 576] Length = 598 Score = 173 bits (438), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 117/391 (29%), Positives = 192/391 (49%), Gaps = 27/391 (6%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 81 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 140 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++SI+ + AARVH+ +P Sbjct: 141 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 198 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ V + A+ +V+++VP++ +VT++D G LLT Sbjct: 199 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 258 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 259 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 318 Query: 280 PDSKVERS-IRLSKDAQRSE----------------TSQPESAVTVEQNMPHVSDRKVPL 322 P+ ++S IR + + +E QP SA V N P+ Sbjct: 319 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 378 Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382 +D+K+ +NYE++ ++RLS+AVVVN T+ GR Q Sbjct: 379 ------SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAA 432 Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413 LA++ ++V A G + +RGD++ + + F Sbjct: 433 DKLAQVQQLVKDAMGYDEKRGDSVNVVNSAF 463 >gi|53717872|ref|YP_106858.1| flagellar MS-ring protein [Burkholderia pseudomallei K96243] gi|126453288|ref|YP_001064517.1| flagellar MS-ring protein [Burkholderia pseudomallei 1106a] gi|134283661|ref|ZP_01770360.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 305] gi|162210024|ref|YP_331831.2| flagellar MS-ring protein [Burkholderia pseudomallei 1710b] gi|226199798|ref|ZP_03795349.1| flagellar M-ring protein FliF [Burkholderia pseudomallei Pakistan 9] gi|242317746|ref|ZP_04816762.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1106b] gi|254182183|ref|ZP_04888780.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1655] gi|254188113|ref|ZP_04894625.1| flagellar M-ring protein FliF [Burkholderia pseudomallei Pasteur 52237] gi|254196619|ref|ZP_04903043.1| flagellar M-ring protein FliF [Burkholderia pseudomallei S13] gi|254259466|ref|ZP_04950520.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1710a] gi|52208286|emb|CAH34218.1| flagellar M-ring protein [Burkholderia pseudomallei K96243] gi|126226930|gb|ABN90470.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1106a] gi|134245070|gb|EBA45165.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 305] gi|157935793|gb|EDO91463.1| flagellar M-ring protein FliF [Burkholderia pseudomallei Pasteur 52237] gi|169653362|gb|EDS86055.1| flagellar M-ring protein FliF [Burkholderia pseudomallei S13] gi|184212721|gb|EDU09764.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1655] gi|225928149|gb|EEH24185.1| flagellar M-ring protein FliF [Burkholderia pseudomallei Pakistan 9] gi|242140985|gb|EES27387.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1106b] gi|254218155|gb|EET07539.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1710a] Length = 598 Score = 173 bits (438), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 117/391 (29%), Positives = 192/391 (49%), Gaps = 27/391 (6%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 81 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 140 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++SI+ + AARVH+ +P Sbjct: 141 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 198 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ V + A+ +V+++VP++ +VT++D G LLT Sbjct: 199 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 258 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 259 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 318 Query: 280 PDSKVERS-IRLSKDAQRSE----------------TSQPESAVTVEQNMPHVSDRKVPL 322 P+ ++S IR + + +E QP SA V N P+ Sbjct: 319 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 378 Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382 +D+K+ +NYE++ ++RLS+AVVVN T+ GR Q Sbjct: 379 ------SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAA 432 Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413 LA++ ++V A G + +RGD++ + + F Sbjct: 433 DKLAQVQQLVKDAMGYDEKRGDSVNVVNSAF 463 >gi|237810412|ref|YP_002894863.1| flagellar M-ring protein FliF [Burkholderia pseudomallei MSHR346] gi|237505247|gb|ACQ97565.1| flagellar M-ring protein FliF [Burkholderia pseudomallei MSHR346] Length = 598 Score = 173 bits (438), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 117/391 (29%), Positives = 192/391 (49%), Gaps = 27/391 (6%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 81 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 140 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++SI+ + AARVH+ +P Sbjct: 141 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 198 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ V + A+ +V+++VP++ +VT++D G LLT Sbjct: 199 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 258 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 259 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 318 Query: 280 PDSKVERS-IRLSKDAQRSE----------------TSQPESAVTVEQNMPHVSDRKVPL 322 P+ ++S IR + + +E QP SA V N P+ Sbjct: 319 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 378 Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382 +D+K+ +NYE++ ++RLS+AVVVN T+ GR Q Sbjct: 379 ------SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAA 432 Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413 LA++ ++V A G + +RGD++ + + F Sbjct: 433 DKLAQVQQLVKDAMGYDEKRGDSVNVVNSAF 463 >gi|167813742|ref|ZP_02445422.1| flagellar MS-ring protein [Burkholderia pseudomallei 91] Length = 559 Score = 173 bits (438), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 117/391 (29%), Positives = 192/391 (49%), Gaps = 27/391 (6%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 42 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 101 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++SI+ + AARVH+ +P Sbjct: 102 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 159 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ V + A+ +V+++VP++ +VT++D G LLT Sbjct: 160 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 219 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 220 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 279 Query: 280 PDSKVERS-IRLSKDAQRSE----------------TSQPESAVTVEQNMPHVSDRKVPL 322 P+ ++S IR + + +E QP SA V N P+ Sbjct: 280 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 339 Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382 +D+K+ +NYE++ ++RLS+AVVVN T+ GR Q Sbjct: 340 ------SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAA 393 Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413 LA++ ++V A G + +RGD++ + + F Sbjct: 394 DKLAQVQQLVKDAMGYDEKRGDSVNVVNSAF 424 >gi|76581502|gb|ABA50977.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1710b] Length = 627 Score = 173 bits (438), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 117/391 (29%), Positives = 192/391 (49%), Gaps = 27/391 (6%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 110 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 169 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++SI+ + AARVH+ +P Sbjct: 170 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 227 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ V + A+ +V+++VP++ +VT++D G LLT Sbjct: 228 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 287 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 288 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 347 Query: 280 PDSKVERS-IRLSKDAQRSE----------------TSQPESAVTVEQNMPHVSDRKVPL 322 P+ ++S IR + + +E QP SA V N P+ Sbjct: 348 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 407 Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382 +D+K+ +NYE++ ++RLS+AVVVN T+ GR Q Sbjct: 408 ------SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAA 461 Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413 LA++ ++V A G + +RGD++ + + F Sbjct: 462 DKLAQVQQLVKDAMGYDEKRGDSVNVVNSAF 492 >gi|167900849|ref|ZP_02488054.1| flagellar MS-ring protein [Burkholderia pseudomallei NCTC 13177] Length = 500 Score = 173 bits (438), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 117/391 (29%), Positives = 192/391 (49%), Gaps = 27/391 (6%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 56 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 115 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++SI+ + AARVH+ +P Sbjct: 116 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 173 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ V + A+ +V+++VP++ +VT++D G LLT Sbjct: 174 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 233 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 234 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 293 Query: 280 PDSKVERS-IRLSKDAQRSE----------------TSQPESAVTVEQNMPHVSDRKVPL 322 P+ ++S IR + + +E QP SA V N P+ Sbjct: 294 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 353 Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382 +D+K+ +NYE++ ++RLS+AVVVN T+ GR Q Sbjct: 354 ------SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAA 407 Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413 LA++ ++V A G + +RGD++ + + F Sbjct: 408 DKLAQVQQLVKDAMGYDEKRGDSVNVVNSAF 438 >gi|167843852|ref|ZP_02469360.1| flagellar MS-ring protein [Burkholderia pseudomallei B7210] Length = 565 Score = 172 bits (437), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 117/391 (29%), Positives = 192/391 (49%), Gaps = 27/391 (6%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 48 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 107 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++SI+ + AARVH+ +P Sbjct: 108 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 165 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ V + A+ +V+++VP++ +VT++D G LLT Sbjct: 166 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 225 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 226 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 285 Query: 280 PDSKVERS-IRLSKDAQRSE----------------TSQPESAVTVEQNMPHVSDRKVPL 322 P+ ++S IR + + +E QP SA V N P+ Sbjct: 286 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 345 Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382 +D+K+ +NYE++ ++RLS+AVVVN T+ GR Q Sbjct: 346 ------SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAA 399 Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413 LA++ ++V A G + +RGD++ + + F Sbjct: 400 DKLAQVQQLVKDAMGYDEKRGDSVNVVNSAF 430 >gi|167736645|ref|ZP_02409419.1| flagellar MS-ring protein [Burkholderia pseudomallei 14] Length = 465 Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 117/391 (29%), Positives = 192/391 (49%), Gaps = 27/391 (6%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 53 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 112 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++SI+ + AARVH+ +P Sbjct: 113 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 170 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ V + A+ +V+++VP++ +VT++D G LLT Sbjct: 171 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 230 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 231 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 290 Query: 280 PDSKVERS-IRLSKDAQRSE----------------TSQPESAVTVEQNMPHVSDRKVPL 322 P+ ++S IR + + +E QP SA V N P+ Sbjct: 291 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 350 Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382 +D+K+ +NYE++ ++RLS+AVVVN T+ GR Q Sbjct: 351 ------SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAA 404 Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413 LA++ ++V A G + +RGD++ + + F Sbjct: 405 DKLAQVQQLVKDAMGYDEKRGDSVNVVNSAF 435 >gi|307944136|ref|ZP_07659477.1| flagellar M-ring protein FliF [Roseibium sp. TrichSKD4] gi|307772482|gb|EFO31702.1| flagellar M-ring protein FliF [Roseibium sp. TrichSKD4] Length = 537 Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 134/417 (32%), Positives = 218/417 (52%), Gaps = 18/417 (4%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVI--LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 ++ L++F K+ LG TR+ + +V LV I F+ R V +P LY L + D Sbjct: 1 MNGLIEFIKT---LGPTRVAAMGAVAAMLVGIFAFIILR--VTAPQMTTLYSDLTLEDSG 55 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L + + + NG+++ VP V + R+ LA GLP+ S GYE+FD+ ++ G Sbjct: 56 AIVSRLEGMGVPYELGRNGATVMVPRERVARLRMQLAEDGLPTGGS-IGYEIFDRSDTLG 114 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 TSF+Q I +RALEGE+AR+I +I I +ARVH+V+P+ F++ PT S+++ Sbjct: 115 ATSFVQNINHLRALEGELARSIAAIDRIQSARVHLVIPERQLFQRDQRAPTGSIVLNVRG 174 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSL-SIVQAIQ 238 A++HLVA AV L V+V+D TG+LL A E I+G SL V AI+ Sbjct: 175 TLGQGEIRAVQHLVATAVEGLRPESVSVVDETGRLLASGAESDEEGIIGNSLQERVFAIE 234 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAEL--NMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 ++ + + L++ +G R V A++ N T+ I +DP+ +V RS + ++A Sbjct: 235 SRLKGQVEEILSSVVGPGRSRVRVAADVDFNRTTETIE--TFDPEGQVVRSTQTKEEA-- 290 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 S +++ + VTV +P+ D S E T EE NYEI+ + + +++R Sbjct: 291 SSSTERTNEVTVGNELPNGGDNNG-GEGSNEETTATEEIVNYEISRSTKTEIVEAGRVQR 349 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 LS+AV+V+ G + L I +V +A G + RGD + + ++ F Sbjct: 350 LSVAVLVDGTYGPNADGEVVYTPRTQETLDRIALLVRSAVGFDEGRGDIVEVVNLQF 406 >gi|134297240|ref|YP_001120975.1| flagellar MS-ring protein [Burkholderia vietnamiensis G4] gi|134140397|gb|ABO56140.1| flagellar M-ring protein FliF [Burkholderia vietnamiensis G4] Length = 587 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 117/390 (30%), Positives = 194/390 (49%), Gaps = 24/390 (6%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y LY L D I AL +AN+ ++ +D G +I VPS+ V + R+ LAA Sbjct: 79 LWSRTPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSNQVHETRLKLAAM 138 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S G+EL D FG++ F +++ RALEGE+ RTI+SI+ + ARVH+ +P Sbjct: 139 GLPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLAIPK 196 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV I V +AI +V++ VP++ +VT++D G LLT Sbjct: 197 PSVFVRDKEAPSASVFIDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGNLLT 256 Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 + L VQ ++ + I+ LA G N RS V A+++ + Y Sbjct: 257 QPASASGLDASQLKYVQQVERNTQKRIDSILAPIFGTGNARSQVSADIDFSKLEQTSESY 316 Query: 279 DPDSKVER-SIRLSKDAQRSETSQ--------------PESAVTVEQNMPHVSDRKVPLP 323 P+ ++ +IR + + +E +Q P+ A + P V+ P Sbjct: 317 GPNGTPQQAAIRSQQTSSATELAQGGASGVPGALSNTPPQPA-----SAPIVAGNGQSGP 371 Query: 324 RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS 383 +S +D+K++ +NYE++ ++RLS+AVVVN + + G Q + Sbjct: 372 QSTPVSDRKDQTTNYELDKTIRHVEQPMGNVKRLSVAVVVNYQPVADAKGHVTMQPLPPA 431 Query: 384 YLAEINKIVSAATGINSRRGDTITITSMDF 413 LA+I ++V A G + +RGD++ + + F Sbjct: 432 KLAQIEQLVKDAMGYDEKRGDSVNVVNSAF 461 >gi|254251157|ref|ZP_04944475.1| Flagellar biosynthesis/type III secretory pathway lipoprotein [Burkholderia dolosa AUO158] gi|124893766|gb|EAY67646.1| Flagellar biosynthesis/type III secretory pathway lipoprotein [Burkholderia dolosa AUO158] Length = 588 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 117/390 (30%), Positives = 194/390 (49%), Gaps = 24/390 (6%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y LY L D I AL +AN+ ++ +D G +I VPSS V + R+ LAA Sbjct: 79 LWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSSQVHETRLKLAAM 138 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S G+EL D FG++ F ++I RALEGE+ RTI+SI+ + ARVH+ +P Sbjct: 139 GLPKGGS-VGFELMDN-QKFGISQFAEQINYQRALEGELQRTIESINAVRGARVHLAIPK 196 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + V +AI +V++ VP++ +VT++D G LLT Sbjct: 197 PSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGNLLT 256 Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 + L VQ ++ + I+ LA G N RS V A+++ + Y Sbjct: 257 QTASATGLDASQLKYVQQVERNTQKRIDAILAPIFGAGNARSQVSADIDFSKLEQTSESY 316 Query: 279 DPDSKVER-SIRLSKDAQRSETSQ--------------PESAVTVEQNMPHVSDRKVPLP 323 P+ ++ +IR + + +E +Q P+ A + P V+ P Sbjct: 317 APNGTPQQAAIRSQQTSTSTELAQSGASGVPGALSNTPPQPA-----SAPIVAGNGQNGP 371 Query: 324 RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS 383 ++ +D+K++ +NYE++ ++RLS+AVVVN + + G Q + Sbjct: 372 QTTPVSDRKDQTTNYELDKTIRHVEQPMGSVKRLSVAVVVNYQPVADAKGHVTMQPLPPA 431 Query: 384 YLAEINKIVSAATGINSRRGDTITITSMDF 413 LA+I ++V A G + +RGD++ + + F Sbjct: 432 KLAQIEQLVKDAMGYDQKRGDSVNVVNSAF 461 >gi|237653561|ref|YP_002889875.1| flagellar MS-ring protein [Thauera sp. MZ1T] gi|237624808|gb|ACR01498.1| flagellar M-ring protein FliF [Thauera sp. MZ1T] Length = 571 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 133/449 (29%), Positives = 213/449 (47%), Gaps = 44/449 (9%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L+ D +I L + NI +R+S G +I VP + V + R+ LAA Sbjct: 59 LWNRAPEYAVLFSNLDERDGGQIIAELQQRNIPYRMSPTGHAILVPQAQVHETRLRLAAD 118 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S +G+EL D G++ F +++ RALEGE+ RT+Q+I + +ARVH+ MP Sbjct: 119 GLPKGSL-AGFELMDG-QKLGISQFNEQVNYQRALEGELTRTVQAIDAVASARVHLAMPK 176 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 +F + RPTASVM+ R ++P I HLV+++VP + V ++D GK Sbjct: 177 QTAFLRDDQRPTASVMVNLRGGRILSPD---QVAGIVHLVSSSVPRMHAEGVKIVDQNGK 233 Query: 216 LLT--ANEMERNIL-GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272 LLT A+ + R L L V+ ++ I+K LA +G N+ + V A+++ + + Sbjct: 234 LLTEQADPLLRAGLDATQLEYVRLLEQGFIERIDKILAPLVGKGNYGAQVAADVDFNQVE 293 Query: 273 IREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332 Y P+ +++IR Q SE P+ Q +P + P+P + T+ + Sbjct: 294 QTAETYKPNPTPDQAIR---SQQTSEAFNPQPGA---QGVPGALTNQPPVPATAPITNPQ 347 Query: 333 EEQS---------------NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSAD 377 NYE++ +++RLS+AVVVN L G + Sbjct: 348 VAGGGGAQGLASGNRSAVLNYELDRNIQHVKQAVGQIKRLSVAVVVNNRTLPGPDGTPTN 407 Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMD----ILS 433 D +A I +V A G N+ RGDTI + S F ++ SG + D L Sbjct: 408 VPLPDEEIARITNLVREAVGYNADRGDTINVASGAFADD---GSGAAPPPWKDPEIVALG 464 Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRR 462 + +N L+ L+ L F + L R Sbjct: 465 KEG---LNWLLVLIAILFAYFGVIRPLLR 490 >gi|327399353|ref|YP_004340222.1| flagellar M-ring protein FliF [Hippea maritima DSM 10411] gi|327181982|gb|AEA34163.1| flagellar M-ring protein FliF [Hippea maritima DSM 10411] Length = 550 Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 135/438 (30%), Positives = 224/438 (51%), Gaps = 43/438 (9%) Query: 4 LDQLLQFFKSGTSLGRTRILILASV-ILVPIMLFM--AARFFVNSPHYDNLYVKLEVSDV 60 L+Q+ +F+ T + RI++ +SV +LV +LF+ A+ +P + NL K D Sbjct: 7 LEQVKKFY--NTMNRQQRIILFSSVGVLVAGILFILIASSKVAYAPLFTNLNAK----DA 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 + I L++ + +++ + G+ I VP MV R+ L A GLP G+E+FDK N F Sbjct: 61 SDIVTYLNQHGVKYKLINGGTVIEVPKDMVYSLRLDLVAAGLPKHGV-VGFEIFDKQN-F 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 T+F++ I +RALEGE+ RTI +I+ I +A+V+I +P F + PTAS+++ Sbjct: 119 STTNFVENINYIRALEGELTRTIANINEIKSAKVNIAIPKPTIFTESQQPPTASIVLDLY 178 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-GKSLSIVQAIQH 239 P + AI+ LVA+AVP L DVT++DS G LL+ N + +L L Q I+ Sbjct: 179 KPLTRQQIVAIQKLVASAVPGLSYKDVTIVDSDGNLLSVNIPDEQLLTANELKYKQFIEQ 238 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 + I LA LG D F +V EL++ + + ++YDP+S V +S++ + S + Sbjct: 239 RYKSRIKSMLAPILGKDKFVVSVDVELDLSKIKKKSVIYDPNSVV-----VSEENEESTS 293 Query: 300 SQPESAVTVEQNMPHV-----SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 + P S +P V + + K + +NY++ T K+ Sbjct: 294 TTPTSG-----GVPGVISNIDNKTNAAAASGTAKSSKSKTITNYDVGRTETITEGPLIKI 348 Query: 355 ERLSIAVVVN---------KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 +++S AVVV+ KG++ +S Q I + I + V +A G +++RGD Sbjct: 349 KKISAAVVVDGIYEPVKNKKGKVVSYKFKSLPQNTIST----IQQAVMSAIGYDNKRGDK 404 Query: 406 ITITSMDFL---ENQLFN 420 +T+T M F E Q+ N Sbjct: 405 VTVTCMKFAMSGEKQMGN 422 >gi|18182538|gb|AAL65160.1|AF453480_2 flagellar MS ring protein [Burkholderia cepacia] Length = 587 Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 115/385 (29%), Positives = 191/385 (49%), Gaps = 14/385 (3%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y LY L D I AL +AN+ ++ +D G +I VPS+ V + R+ LAA Sbjct: 78 LWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSNQVHETRLKLAAM 137 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S G+EL D FG++ F ++I RALEGE+ RTI+SI+ + ARVH+ +P Sbjct: 138 GLPKGGS-VGFELMDN-QKFGISQFAEQINYQRALEGELQRTIESINAVRGARVHLAIPK 195 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + V +AI +V++ VP++ +VT++D G LLT Sbjct: 196 PSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGNLLT 255 Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 + L VQ ++H + I+ LA G N RS V A+L+ + Y Sbjct: 256 QTASASGLDASQLKYVQQVEHNTQKRIDAILAPIFGAGNARSQVSADLDFSKIEQTSESY 315 Query: 279 DPDSKVER-SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPL---------PRSLEN 328 P+ ++ +IR + + +E +Q + R P++ Sbjct: 316 GPNGTPQQAAIRSQQTSSATELAQAARRACRARCRTRRRSRPPRRSSPGNGQNAPQTTPV 375 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 +D+K++ +NYE++ T ++RLS+AVVVN + + G Q + LA++ Sbjct: 376 SDRKDQTTNYELDKTIRHTEQPMGSVKRLSVAVVVNYQPVADAKGHVTMQPLPPAKLAQV 435 Query: 389 NKIVSAATGINSRRGDTITITSMDF 413 ++V A G + +RGD++ + + F Sbjct: 436 EQLVKDAMGYDEKRGDSVNVVNSAF 460 >gi|222053602|ref|YP_002535964.1| flagellar M-ring protein FliF [Geobacter sp. FRC-32] gi|221562891|gb|ACM18863.1| flagellar M-ring protein FliF [Geobacter sp. FRC-32] Length = 522 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 139/475 (29%), Positives = 233/475 (49%), Gaps = 34/475 (7%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L +LL F SL ++ LI+A V ++ F A F N Y L+ L D I Sbjct: 5 LKKLLDPF---LSLPTSKRLIVAGVAACSLLAFAALIFVANRTDYRPLFANLTTEDAGEI 61 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L + + ++IS +G +I VPS V + R+ LA +GLP G+E+FD+ N FG+T Sbjct: 62 VKKLKDQKVAYQISADGKAILVPSDKVYELRLSLAGEGLPQGG-GIGFEIFDRKN-FGMT 119 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 F+Q++ RAL+GE++RTI ++G+ ARVH+V+P+ F+ PTASV+++ + Sbjct: 120 EFVQKLNYQRALQGELSRTIAQLAGVEQARVHLVIPEKSLFKDSEKPPTASVVLKMKSNR 179 Query: 184 VYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEI 241 + E + HLV++A+ +D +VTVLDS GK+L+ + GK S +Q Q Sbjct: 180 TLRENEVQGVVHLVSSAIEGMDTENVTVLDSRGKVLSRT-GPSDATGKLTSTMQETQRNY 238 Query: 242 EMNINKALAAFLG--VDNFRSAVVAELNMDTQQIR--EIVYDPDSKVERSIRLSKDAQRS 297 E N+ + L + L V + RS D +Q+ E YDP++ RS QRS Sbjct: 239 EKNLEERLQSLLDKVVGSGRSVARVSATFDFKQVEKYEEKYDPETAAVRS------EQRS 292 Query: 298 ETSQPESAVTVEQNMPHVS---DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 E + A + +P V R P + K +E NYE++ + L Sbjct: 293 E--EKAGATNIAAGVPGVQTNMGRTAPGAGTTGGGSKSDETLNYEVSRTTARIIEPVGSL 350 Query: 355 ERLSIAVVVNKGRLTEVLGRSAD------QGKIDSYLAEINKIVSAATGINSRRGDTITI 408 ++S+A++V+ G+ A Q + L +I +V ++ G N+ RGD +T+ Sbjct: 351 TKVSVAILVD-GKYEAPAAAKAGAAKAKYQPRTPDELQKIESLVKSSVGFNAERGDQVTV 409 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 ++ F E + G+ + ++ + + T++ L+ G + F + L R+ Sbjct: 410 ANIPFQETG--DMGSAEDAWWN--APIVMTLLKNLLIAGGFFAIIFFVIKPLMRM 460 >gi|170751440|ref|YP_001757700.1| flagellar MS-ring protein [Methylobacterium radiotolerans JCM 2831] gi|170657962|gb|ACB27017.1| flagellar M-ring protein FliF [Methylobacterium radiotolerans JCM 2831] Length = 525 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 145/542 (26%), Positives = 255/542 (47%), Gaps = 30/542 (5%) Query: 25 LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI-SDNGSSI 83 +A+V L I F V+ P L+ L + D + L I + D G +I Sbjct: 1 MAAVTLTLIGFFAFIILRVSRPDMGVLFSDLSMQDSASVVRELDSRGIRYETRGDAGQTI 60 Query: 84 SVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTI 143 P + K R+ LA +GLP+ GYE+FDK ++F T+F+Q + +RALEGE+AR+I Sbjct: 61 LAPRPDLAKLRMDLAGKGLPTQG-GVGYEIFDKGDAFSSTNFVQNVNHLRALEGELARSI 119 Query: 144 QSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLD 203 ++I + AARVH+V+P+ F + P+A+++++ + AIRHLVA+AV L Sbjct: 120 RAIGRVQAARVHLVLPERRLFERDRESPSAAIVLKLMGDLDAGQVRAIRHLVASAVEGLK 179 Query: 204 MGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSA 261 ++++D G+LL A + ++ A++ + I +A +G R Sbjct: 180 PERISIVDERGRLLADGARDAATDVASGFEDRQVALERRLRGQIEDVVAGIVGPGRARVQ 239 Query: 262 VVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV-SDRKV 320 V AEL+++ + R +DP+S+V RS + ++ + T E V+V +P K Sbjct: 240 VNAELDLNRVESRSETFDPESRVVRSAQTRTES--AVTGNAEGQVSVGNELPGANGGDKA 297 Query: 321 PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380 P P+ + T+K EE +NYEI+ + + +++RLS+AVV++ G+ + Sbjct: 298 PTPK--DATNKNEETTNYEISRVTKTEIAEGGRIKRLSVAVVLDGVYAAAPDGKQTYSPR 355 Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440 + + I +V A G + RGD I + ++ F E T +L+ V+ Sbjct: 356 TPAEIERITALVRGAVGFDKARGDQIEVVNLRFAEAPSVPQFTEPTLIESLLAPTKDDVL 415 Query: 441 NALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVT-TGL-MPNDN 498 V LL + L +R L + +L+P P + A+T +GL +P D Sbjct: 416 RMAELAVLALLTLIVLLTVVRPLV------------RQVLAPVPEAPALTASGLAIPGDA 463 Query: 499 IALDSSNQDIFSHSRNLQS-------RINSYVSKQSDLRLLHMIEINEERFAKILRKWAR 551 + + R+ + +IN V ++ R++ M+ + ++LR W + Sbjct: 464 AVVAGPGGTVTVIDRDSPTARLMEFAKINGQVQAETVQRVVDMVRASPSETVEVLRTWIQ 523 Query: 552 SE 553 E Sbjct: 524 EE 525 >gi|329849956|ref|ZP_08264802.1| flagellar M-ring protein FliF [Asticcacaulis biprosthecum C19] gi|328841867|gb|EGF91437.1| flagellar M-ring protein FliF [Asticcacaulis biprosthecum C19] Length = 554 Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 155/531 (29%), Positives = 248/531 (46%), Gaps = 57/531 (10%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110 LY L++ + + I+ ALS+ I + +GS+I V V +AR+ LA++GLP+ +S G Sbjct: 45 LYSNLDLKEASEITTALSQGGIKYEAKGDGSTIMVNRDQVAEARMMLASKGLPTQAS-VG 103 Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170 YE+FD + G T +Q I RALEGE+ARTI+++ GI +ARVH+VMP F + Sbjct: 104 YEIFDDAPALGQTEAVQNINNQRALEGELARTIRTLRGISSARVHLVMPKRELFEDAAGQ 163 Query: 171 PTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK 229 PTASV++ S+ + AIR++VA AVPNL +VT++D LL A + +G Sbjct: 164 PTASVVLGLSGGSLSSESVAAIRNVVATAVPNLKADNVTIVDDRNHLLAAGGDSDSAMGV 223 Query: 230 SLSIVQAIQHEIEMNINKA----LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVE 285 + S A + EIE ++ K + +G R V AE++ ++ Y+PD +V Sbjct: 224 AGS---ARKSEIEDSVRKRVMEIVEGVVGPGAARVMVTAEIDQTATTREQVEYNPDGQVV 280 Query: 286 RSIRLSKDAQRSETSQPESA--VTVEQNMPHVSDRKVP-LPRSLENTDKKEEQSNYEINT 342 RS S ++ T+ P SA T N+P ++ P L S ++ + E +N+EI+T Sbjct: 281 RST--STNSGTETTADPNSAGQTTATANIPGT--QQAPNLSTSGNSSQQDSEVTNFEIST 336 Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY-------LAEINKIVSAA 395 ++++L++AVVV+ V SAD +Y + I ++V AA Sbjct: 337 TKTTEVKAPGEIKKLAVAVVVDG-----VETPSADGKAPPAYAPRSAEDMQRIQELVQAA 391 Query: 396 TGINSRRGDTITITSMDFLENQLFNSGT-VQVSFMDILSRHFATVINALVFLVGTLLVTF 454 G + RGD + ++++ F F +GT + D I V + LLV F Sbjct: 392 VGYDQTRGDQVRVSNIRFSRGD-FAAGTDAKPPLFDFDKNDIMRAIEVAVLFIVALLVIF 450 Query: 455 LGLHALRR------------LHNIDDAKKGEVGGKSILSPPPISSA----VTTGLMPNDN 498 L L + L + + + G ++ P A TGL+P Sbjct: 451 LIARPLLKFINGGGAAGGNFLGTANGGSQAALAGAAVTGPSISYQAADNIAATGLVPTQE 510 Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549 R +RI V S ++ ++ + E ILR W Sbjct: 511 -----------QEQRIDIARIEGQVKASSVKKVSEFVDRHPEESVSILRSW 550 >gi|220932525|ref|YP_002509433.1| flagellar M-ring protein FliF [Halothermothrix orenii H 168] gi|219993835|gb|ACL70438.1| flagellar M-ring protein FliF [Halothermothrix orenii H 168] Length = 519 Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 134/424 (31%), Positives = 211/424 (49%), Gaps = 34/424 (8%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 D + QF + ++L + +++ S + V ++ + +SP Y L+ L D + I Sbjct: 7 DYIEQFKELWSNLNKRAKVVIISGVGVDLLTLILIIAMGSSPDYQPLFSNLNPRDADAII 66 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L E I +R++DNG +I VPS V K R+ +A +GLPS G+E+F++ N FG T Sbjct: 67 EKLDEQGIPYRLTDNGQTILVPSQHVYKTRLDMAGEGLPSQGV-VGFEIFNQSN-FGTTD 124 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-----A 179 F +++ RAL GE++R+IQ++ I A+V I P F + ASV+++ Sbjct: 125 FERKVNFYRALGGELSRSIQAMEAIEYAKVQITAPKESLFIEEEQPAEASVLLKFVPGHK 184 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ-AIQ 238 ++P K AI +LVA++V LD VT++D++G LL+ N +++ L++ Q IQ Sbjct: 185 LSPDQVK---AISNLVASSVQGLDPDKVTIVDTSGNLLSRN-TDKDFYNSQLTMNQFEIQ 240 Query: 239 HEIEMNINKALAAF----LGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLS 291 + ++ L AF LG DNF V A LN D +Q+ Y P D + RS + Sbjct: 241 RKFAESLENDLRAFLFKVLGPDNFTVQVKAWLNFDKRQVESKTYSPVVGDEGIVRSQQEH 300 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 +++ E N+P + V S + + +NYEIN K + Sbjct: 301 EESYEGENPVATGVPGTTSNIPQY--QSVEEENSGGTYESSDVITNYEINEKIEKHVYSP 358 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 +ERLS+AV+VN L R L +I V AA G + RGD +T+TSM Sbjct: 359 GSVERLSVAVIVNSS-----LERDE--------LQKIRNAVQAAIGYDPERGDMVTVTSM 405 Query: 412 DFLE 415 DF E Sbjct: 406 DFDE 409 >gi|189426353|ref|YP_001953530.1| flagellar M-ring protein FliF [Geobacter lovleyi SZ] gi|189422612|gb|ACD97010.1| flagellar M-ring protein FliF [Geobacter lovleyi SZ] Length = 530 Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 138/466 (29%), Positives = 221/466 (47%), Gaps = 31/466 (6%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 +L + L++ V+L ++ F N Y L+ L D I L EA ++ Sbjct: 14 ALAPGKRLLVGGVVLACLLSFALLIMLANRTDYRPLFTNLASEDAGEIVKKLKEAKTPYQ 73 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135 I+ +G I VP+ V + R+ LA++GLP G+E+FD+ N FG+T F+Q++ RAL Sbjct: 74 ITPDGKGIMVPADKVYELRLSLASEGLPQGG-GVGFEIFDRKN-FGMTEFVQKLNYQRAL 131 Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRH 193 +GE+ARTI ISG+ ARVH+V+P+ F++ PTASV+++ + E + H Sbjct: 132 QGELARTITQISGVEQARVHLVIPEKTLFKEAEKPPTASVVLKMKGNKNLRDNEVQGVVH 191 Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKALAA 251 LV++++ ++ +VTVLDS GK+L+ N M + K+ S +Q Q E N+ + L Sbjct: 192 LVSSSIEGMNADNVTVLDSRGKILSKGGNGMA-DASAKATSAMQETQRGYERNVEERLQT 250 Query: 252 FLG--VDNFRSAVVAELNMDTQQIREI--VYDPDSKVERSIRLSKDAQRSETSQPESAVT 307 L V +S D +Q+ + +DP++ RS QRSE SAV+ Sbjct: 251 LLDRVVGGGKSVARVSATFDFKQVERVEEKFDPETIAVRS------EQRSEEKAGGSAVS 304 Query: 308 VEQNMPHVS---DRKVPLPRSLENTDKKEEQS-NYEINTKSIATTHDNYKLERLSIAVVV 363 +P V R P K +++ NYE++ + T L ++S+A++V Sbjct: 305 T--GVPGVQTNLGRTAPGAGGAAGGGSKNDETLNYEVSRSTSRTVEPVGTLSKVSVAILV 362 Query: 364 NKGRLTEVLGRSADQGKID------SYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 + T G+ GK L +I +V A G N RGD I+I ++ F + Sbjct: 363 DGKYETGAPGKDGAAGKAKYVPRSPDELQKIEALVKGAVGFNQERGDQISIQNIAFQDAG 422 Query: 418 LFNSGTVQVSFM--DILSRHFATVINALVFLVGTLLVTFLGLHALR 461 T + F ++ AL FL L V L+ LR Sbjct: 423 EAAGSTESAKWWMNPFFLTLFKNLMIALGFLALMLFVVKPMLNTLR 468 >gi|172062015|ref|YP_001809667.1| flagellar MS-ring protein [Burkholderia ambifaria MC40-6] gi|171994532|gb|ACB65451.1| flagellar M-ring protein FliF [Burkholderia ambifaria MC40-6] Length = 587 Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 114/386 (29%), Positives = 192/386 (49%), Gaps = 16/386 (4%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y LY L D I AL +AN+ ++ +D G +I VPS+ V + R+ LAA Sbjct: 79 LWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSNQVHETRLKLAAL 138 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S G+EL D FG++ F +++ RALEGE+ RTI+SI+ + ARVH+ +P Sbjct: 139 GLPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLAIPK 196 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + V +AI +V++ VP++ +VT++D G LLT Sbjct: 197 PSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGNLLT 256 Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 + L VQ ++H + I+ LA G N RS V A+++ + Y Sbjct: 257 QTASASGLDASQLKYVQQVEHNTQKRIDAILAPIFGTGNARSQVSADIDFSKLEQTSESY 316 Query: 279 DPDSKVER-SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLP----------RSLE 327 P+ ++ +IR + + +E +Q A V + + + P +S Sbjct: 317 GPNGTPQQAAIRSQQTSSATELAQ-GGASGVPGALSNTPPQPASAPIVAGNGQNGAQSTP 375 Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE 387 +D+K++ +NYE++ ++RLS+AVVVN + + G Q LA+ Sbjct: 376 VSDRKDQTTNYELDKTIRHVEQPMGNVKRLSVAVVVNYQPVADAKGHVTMQPLPPPKLAQ 435 Query: 388 INKIVSAATGINSRRGDTITITSMDF 413 + ++V A G + +RGD++ + + F Sbjct: 436 VEQLVKDAMGYDEKRGDSVNVVNSAF 461 >gi|254418232|ref|ZP_05031956.1| flagellar M-ring protein FliF [Brevundimonas sp. BAL3] gi|196184409|gb|EDX79385.1| flagellar M-ring protein FliF [Brevundimonas sp. BAL3] Length = 545 Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 152/543 (27%), Positives = 250/543 (46%), Gaps = 48/543 (8%) Query: 27 SVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVP 86 + +LV +ML M +P LY L++ + I+ AL +A I + +GS++ V Sbjct: 27 TAVLVAVMLRMG-----QAPDA-LLYSNLDLREAGEITTALQQAGIKYTSKGDGSTVMVN 80 Query: 87 SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146 VG AR+ +A +GL +S S GYE+FD + G T F Q++ RAL+GE++RTI S+ Sbjct: 81 RDDVGTARMLIAGKGLVTSGS-VGYEIFDNQSVLGQTEFQQQLNEQRALQGELSRTIMSM 139 Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTASVMI----RAINPSVYKSAEAIRHLVAAAVPNL 202 GI AARVHI MP F PTA+V++ R + P + AIR+LVA++VPNL Sbjct: 140 RGITAARVHITMPRREMFTAAAGDPTAAVLVGLGGRDLTPDQVR---AIRNLVASSVPNL 196 Query: 203 DMGDVTVLDSTGKLLTANEMERNILGKSLSIVQA-IQHEIEMNINKALAAFLGVDNFRSA 261 VTV D + L A + S + + + +++ I + +G+ R Sbjct: 197 KPDRVTVADQNNRTLAAGSDDGTFSSASAAETKGNTEAQLQSRIKDIVEGVVGIGAARVQ 256 Query: 262 VVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVP 321 V A+++ +E +DPD +V RS + T Q + VT N+P P Sbjct: 257 VTADIDQSRSTTQEQKFDPDGQVVRSTTANGSQSSDTTGQNDGGVTAANNIPG----GAP 312 Query: 322 LPRSLENTDKKE--EQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL---GRSA 376 + E E +NYEI+ + TT + ++++L++AV V+ G+ T G Sbjct: 313 PATTPAGATSAENAETTNYEISNTTTTTTKEPGEVKKLAVAVAVD-GKWTPAADGKGEPT 371 Query: 377 DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG-TVQVSFMDILSRH 435 + +A+I +V+AA GI+ RGD I + ++ F + G + S +D Sbjct: 372 YAPRTAEEIAQIKSLVAAAAGIDEARGDKIEVINVRFNHDTGIAGGLEGKSSLLDFSRTD 431 Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495 +I + V LL+ F L L + + P+++ VTT ++ Sbjct: 432 VMRLIELGILAVVALLLIFFVLRPLLKTAGGAAPGAVAAAPAGL----PVAT-VTTTVIG 486 Query: 496 NDN----IALDSSNQ-----DIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546 D + L + N+ DI +RI V S ++ ++ + + A IL Sbjct: 487 ADGQPQLVQLPAPNEMDQKIDI--------ARIEGQVKASSVKKVADFVQAHPDEAAGIL 538 Query: 547 RKW 549 R W Sbjct: 539 RNW 541 >gi|167835057|ref|ZP_02461940.1| flagellar MS-ring protein [Burkholderia thailandensis MSMB43] Length = 486 Score = 170 bits (430), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 115/391 (29%), Positives = 191/391 (48%), Gaps = 27/391 (6%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 46 WSRAPDYRVLYSNLSDRDGGAIITALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 105 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++SI+ + AARVH+ +P Sbjct: 106 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 163 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ V + A+ +V+++VP++ +VT++D G LLT Sbjct: 164 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 223 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N R+ V A+++ + Y Sbjct: 224 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARAQVSADVDFSKIEQTSESYG 283 Query: 280 PDSKVERS-IRLSKDAQRSE----------------TSQPESAVTVEQNMPHVSDRKVPL 322 P+ ++S IR + + +E QP SA V N P+ Sbjct: 284 PNGTPQQSAIRSQQTSTATELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 343 Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382 +D+K+ +NYE++ ++RLS+AVVVN + GR Q Sbjct: 344 ------SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPAADAKGRVTMQPLAA 397 Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413 LA++ ++V A G + +RGD++ + + F Sbjct: 398 DKLAQVQQLVKDAMGYDEKRGDSVNVVNSAF 428 >gi|221215779|ref|ZP_03588738.1| flagellar M-ring protein FliF [Burkholderia multivorans CGD1] gi|221164315|gb|EED96802.1| flagellar M-ring protein FliF [Burkholderia multivorans CGD1] Length = 587 Score = 169 bits (429), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 114/390 (29%), Positives = 195/390 (50%), Gaps = 24/390 (6%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA Sbjct: 79 LWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPAAQVHETRLKLAAL 138 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D FG++ F +++ RALEGE+ RTI+SI+ + ARVH+ +P Sbjct: 139 GLPKGGA-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLAIPK 196 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + V +AI +V++ VP++ +VT++D G LLT Sbjct: 197 PSVFVRDREAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGNLLT 256 Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 + L VQ ++ + I+ LA G N RS V A+++ + Y Sbjct: 257 QPASATGLDASQLKYVQQVERNTQKRIDAILAPIFGAGNARSQVSADIDFSKLEQTSESY 316 Query: 279 DPD-SKVERSIRLSKDAQRSETSQ--------------PESAVTVEQNMPHVSDRKVPLP 323 P+ S + +IR + + +E +Q P+ A + P V+ P Sbjct: 317 GPNGSPQQAAIRSQQTSTSTELAQSGASGVPGALSNTPPQPA-----SAPIVAGNGANAP 371 Query: 324 RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS 383 ++ +D+K++ +NYE++ ++RLS+AVVVN + + G Q + Sbjct: 372 QTTPVSDRKDQTTNYELDKTIRHVEQPMGTVKRLSVAVVVNYQPVADAKGHVTMQPLPPA 431 Query: 384 YLAEINKIVSAATGINSRRGDTITITSMDF 413 LA+I ++V A G +++RGD++ + + F Sbjct: 432 KLAQIEQLVKDAMGYDAKRGDSVNVVNSAF 461 >gi|254445735|ref|ZP_05059211.1| flagellar M-ring protein FliF [Verrucomicrobiae bacterium DG1235] gi|198260043|gb|EDY84351.1| flagellar M-ring protein FliF [Verrucomicrobiae bacterium DG1235] Length = 525 Score = 169 bits (429), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 141/471 (29%), Positives = 235/471 (49%), Gaps = 25/471 (5%) Query: 9 QFFKSGTSLG-RTRI-LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 QF + SLG RI LILAS ++V M+ M + P LY KL + +I Sbjct: 4 QFKEIWQSLGANQRISLILASGLVVLAMIGMM--IWAAQPDMQLLYGKLSAEEAGKIVAK 61 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L + + F G+SI V +S V + R+ LA +G+P+ S G+ELFD+ SFG++ F+ Sbjct: 62 LEQKGVAFETGSGGNSIYVEASQVHRIRMELATEGIPAGGSGPGFELFDE-GSFGISDFV 120 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPD--MGSFRKIGARPTASVMIRAINPSV 184 Q +RA++GE+ARTI G+ +ARV +VMP+ + + R+ RPTASV + S Sbjct: 121 QRTNFLRAVQGELARTISQFDGVESARVMVVMPENRLLASREGQDRPTASVFVDGGGLST 180 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS-----IVQAIQH 239 + +IRHLVA A+ L + DV V+DS G +L+ E+ + +G +S +++++ Sbjct: 181 -GTVNSIRHLVANAIQRLSINDVVVVDSMGTVLS-EELRSDGIGSGISNDVIKYRKSLEN 238 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ--RS 297 + L LG + V ++ + Q E +DP+S+V RS +D+Q R Sbjct: 239 YFTGKVQSMLDRVLGPNQSEVRVAVDIETASVQTTEKTFDPESQVARSTVSDEDSQVERE 298 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSL-ENTDK-KEEQSNYEINTKSIATTHDNYKLE 355 + + A V N P +L E DK K N+EIN + +++ + ++ Sbjct: 299 TSGEGAGATGVSSNTPAAGGAGQTAFSTLKEREDKNKTRTENFEINERIVSSVQNPGSIK 358 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT----ITITSM 411 RL+ +++V K R+ +V G+ + L E++ IV A GI G T +T+ M Sbjct: 359 RLTASLLVAK-RMEDVRGQMNFVDRTPEQLEELSDIVVTALGIQLAPGQTAADFVTVKEM 417 Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 F + N G + + + R+ N + ++G ++ F + L+R Sbjct: 418 AFAVDPFENHGEL-LKEDATIQRYIELGKNGIGAVLGIGVIIFF-MQMLKR 466 >gi|320354317|ref|YP_004195656.1| flagellar M-ring protein FliF [Desulfobulbus propionicus DSM 2032] gi|320122819|gb|ADW18365.1| flagellar M-ring protein FliF [Desulfobulbus propionicus DSM 2032] Length = 550 Score = 169 bits (429), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 135/455 (29%), Positives = 220/455 (48%), Gaps = 25/455 (5%) Query: 21 RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80 R + LA+V + + LF + Y LY L SD + + L NI +++++NG Sbjct: 30 RKIALAAVTAITLGLFAFIIVQARTADYQLLYGNLAESDASSVVEWLKGQNIPYKLANNG 89 Query: 81 SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140 +I +P+ V + R+ LA+ GLP G+E+FDK SF LT F+Q++ RAL+GE+A Sbjct: 90 HNILIPAKDVYETRLSLASLGLPQGG-GVGFEIFDK-QSFALTDFVQKVNYSRALQGELA 147 Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAA 198 RTI S+ + ARVH+ +P+ F+ TASV+I+ A E + HLV+++ Sbjct: 148 RTIASLGPVETARVHLALPEKRLFKDQQKPATASVIIKLAPGKRLSEAQIEGVVHLVSSS 207 Query: 199 VPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255 + LD G VTV+D G +L+ + N+ L ++ +E L LG Sbjct: 208 IEGLDPGQVTVIDQNGNVLSRIGEKGLSGNLSPDMLEFQMQVEQRLEDRAQALLDKSLGA 267 Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ--PESAVTVEQNMP 313 N V A L+ + E +DP+ V RS +LS++ SE + P +E N Sbjct: 268 KNAMVRVSATLDFAQTEKTEETFDPEEPVIRSEQLSEEKSGSEITGGVPGVQSNLEGNTA 327 Query: 314 HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373 + P RS T NYEI+ TT + +LS++V+V V G Sbjct: 328 QTAGATPPSSRSQRTT-------NYEISKVVSKTTQPVGTISKLSVSVLVAD---KVVPG 377 Query: 374 RSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFM 429 + + K ++ L + +V++A GI++ RGD I +TSM FLE+ G + Sbjct: 378 KDKEPAKTEPRSETELKTLQTMVASALGIDTARGDKIEVTSMPFLESA--EDGGQEGMAA 435 Query: 430 DILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 ++L ++ + L+ L L+ F+ ++ LH Sbjct: 436 NLLYQYLPFIRYGLLILGAVLIYLFMIRPLMKTLH 470 >gi|259417522|ref|ZP_05741441.1| flagellar MS-ring protein [Silicibacter sp. TrichCH4B] gi|259346428|gb|EEW58242.1| flagellar MS-ring protein [Silicibacter sp. TrichCH4B] Length = 571 Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 167/564 (29%), Positives = 252/564 (44%), Gaps = 45/564 (7%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 R R++ + + + V I F N P LY LE S + AL ++ +D+ + Sbjct: 27 RKRMMAIGATLAV-IFTFFLMSMVANKPSMQLLYAGLESSSAGDVVSALEQSGVDYEV-- 83 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 G SI VPS+ + R+ LA+QGLP++ GYEL D ++ FG TS M + RA EGE Sbjct: 84 RGGSIYVPSNKRDELRMTLASQGLPANGGK-GYELLDSLSGFGTTSQMFDAAYWRAKEGE 142 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN-PSVYKSAEAIRHLVAA 197 +ARTI + + ARVHI F++ PTASV + + P A AIR LVA+ Sbjct: 143 LARTIVANPHVSQARVHIANTGSNPFQRT-IEPTASVSVTPMGTPITPAQANAIRFLVAS 201 Query: 198 AVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDN 257 AV L + +V V+D+ G L+ + E + Q ++ + + + A +G N Sbjct: 202 AVAGLAVDNVAVIDANGALIGSPEAAAAAGAGTDDRSQTLRERVL----RLVEARVGHGN 257 Query: 258 FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA-VTVEQNMPHVS 316 + E DT+ IRE + DP S+V S + +R+++SQ ++ VTV N+P Sbjct: 258 AVVEISVETVTDTESIREKLVDPQSRVAISTDVE---ERTDSSQNQAGEVTVASNIPDGD 314 Query: 317 DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA 376 R+ NT+ E+ NYEI+ ++RL++AV++N G++ Sbjct: 315 AGNGEGSRA--NTNATRERVNYEISETEKEIVRGPGAIKRLTVAVLINGVTTPTADGQAT 372 Query: 377 DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHF 436 + + D L + +++SAA G ++ RGD IT+ SMD L N V S D L Sbjct: 373 FEPRPDEELDALRELISAAVGFDAERGDVITLKSMD-LPNVEPEGTAVTSSMFDNLYFDV 431 Query: 437 ATVINALVFLVGTLLVTFLGLHALRRLHNIDDA-------KKGEVGGKSILSPPPISSAV 489 ++I V L+ LGL +R + + A G G L P Sbjct: 432 MSIIQMAALAVVALI---LGLFVVRPILAGNGASVQALPSPDGMAAGG--LPELPNMGGG 486 Query: 490 TTGLMPN----DNIAL----DSSNQDIFSHSRNLQSRINSY--------VSKQSDLRLLH 533 G M N NIAL DS F L + +S RL Sbjct: 487 DAGFMTNPDLGSNIALDGEIDSGGDGQFQPLGGLPGMGDGLATFGGGGGMSDDPVDRLRS 546 Query: 534 MIEINEERFAKILRKWARSEIEDR 557 MI +E +ILR W E+R Sbjct: 547 MIGERQEETVQILRGWLEENNEER 570 >gi|238028887|ref|YP_002913118.1| flagellar MS-ring protein [Burkholderia glumae BGR1] gi|237878081|gb|ACR30414.1| Flagellar M-ring protein FliF [Burkholderia glumae BGR1] Length = 599 Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 119/389 (30%), Positives = 194/389 (49%), Gaps = 24/389 (6%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +ANI ++ +D G +I VP+S V + R+ LAA G Sbjct: 84 WSRAPDYRVLYSNLSDRDGGAIITALQQANIPYQFADAGGAILVPASQVHETRLRLAAMG 143 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RTI SI+ + +ARVH+ +P Sbjct: 144 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELERTIASINAVRSARVHLAIPKP 201 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV + V + AI +VA+ VP++ +VT++D G LL+ Sbjct: 202 SVFVRDREAPSASVFVDLYPGRVLDDGQVLAITRMVASGVPDMPAKNVTIVDQDGNLLSQ 261 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ ++H + I+ LA G N RS V A+++ + Y Sbjct: 262 QPSSSGLDANQLKYVQQVEHNTQKRIDAILAPMFGAGNTRSQVSADIDFTRSEQTSESYA 321 Query: 280 PD-SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT--------- 329 P+ ++ + +IR +Q++ +S ESA + +P P P S T Sbjct: 322 PNGTQQQAAIR----SQQTSSSV-ESAQSGAGGVPGALSNTPPQPASAPITGASGAAGTP 376 Query: 330 -----DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY 384 D+K+ +NYE++ T ++RLS+AVVVN + + G Q Sbjct: 377 PTPISDRKDSTTNYELDKTVRHTEAPTGGIKRLSVAVVVNNLPVVDAKGHVTMQPLTADK 436 Query: 385 LAEINKIVSAATGINSRRGDTITITSMDF 413 L ++ ++V A G +++RGD++ + + F Sbjct: 437 LKQVEQLVKDAMGYDAKRGDSVNVVNSVF 465 >gi|221201939|ref|ZP_03574976.1| flagellar M-ring protein FliF [Burkholderia multivorans CGD2M] gi|221207554|ref|ZP_03580562.1| flagellar M-ring protein FliF [Burkholderia multivorans CGD2] gi|221172400|gb|EEE04839.1| flagellar M-ring protein FliF [Burkholderia multivorans CGD2] gi|221178359|gb|EEE10769.1| flagellar M-ring protein FliF [Burkholderia multivorans CGD2M] Length = 587 Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 114/390 (29%), Positives = 195/390 (50%), Gaps = 24/390 (6%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA Sbjct: 79 LWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPAAQVHETRLKLAAL 138 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D FG++ F +++ RALEGE+ RTI+SI+ + ARVH+ +P Sbjct: 139 GLPKGGA-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLAIPK 196 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + V +AI +V++ VP++ +VT++D G LLT Sbjct: 197 PSVFVRDREAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGNLLT 256 Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 + L VQ ++ + I+ LA G N RS V A+++ + Y Sbjct: 257 QPASATGLDASQLKYVQQVERNTQKRIDAILAPIFGAGNARSQVSADIDFSKLEQTSESY 316 Query: 279 DPD-SKVERSIRLSKDAQRSETSQ--------------PESAVTVEQNMPHVSDRKVPLP 323 P+ S + +IR + + +E +Q P+ A + P V+ P Sbjct: 317 GPNGSPQQAAIRSQQTSTSTELAQSGASGVPGALSNTPPQPA-----SAPIVAGNGANAP 371 Query: 324 RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS 383 ++ +D+K++ +NYE++ ++RLS+AVVVN + + G Q + Sbjct: 372 QTTPVSDRKDQTTNYELDKTIRHVEQPMGTVKRLSVAVVVNYQPVADAKGHVTMQPLPPA 431 Query: 384 YLAEINKIVSAATGINSRRGDTITITSMDF 413 LA+I ++V A G +++RGD++ + + F Sbjct: 432 KLAQIEQLVKDAMGYDAKRGDSVNVMNSAF 461 >gi|167588531|ref|ZP_02380919.1| flagellar MS-ring protein [Burkholderia ubonensis Bu] Length = 487 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 114/390 (29%), Positives = 195/390 (50%), Gaps = 24/390 (6%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA Sbjct: 52 LWTRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAL 111 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S G+EL D FG++ F ++I RALEGE+ RTI+S++ + AARVH+ +P Sbjct: 112 GLPKGGS-VGFELMDN-QKFGISQFAEQINYQRALEGELQRTIESVNAVKAARVHLAIPK 169 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + V + AI +V++ VP++ +VT++D G LLT Sbjct: 170 PSVFVRDKEAPSASVFVDLYPGRVLDEGQVLAITRMVSSGVPDMPAKNVTIVDQDGNLLT 229 Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 + L VQ ++ + I+ LA G N RS V A+++ + Y Sbjct: 230 QPASATGLDASQLKYVQQVERNTQKRIDAILAPIFGTGNARSQVSADIDFSRLEQTSESY 289 Query: 279 DPDSKVERS-IRLSKDAQRSETSQ--------------PESAVTVEQNMPHVSDRKVPLP 323 P+ +++ IR + + +E +Q P+ A + P V+ P Sbjct: 290 GPNGTPQQTAIRSQQTSTATELAQGGASGVPGALSNTPPQPA-----SAPIVAGNGQNGP 344 Query: 324 RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS 383 ++ +D+K+ +NYE++ ++RLS+AVVVN + + G Q + Sbjct: 345 QATPVSDRKDSTTNYELDKTIRHVEQPMGSVKRLSVAVVVNYQPVADSKGHVTMQPLPPA 404 Query: 384 YLAEINKIVSAATGINSRRGDTITITSMDF 413 LA++ ++V A G +++RGD++ + + F Sbjct: 405 KLAQVEQLVKDAMGYDAKRGDSVNVVNSTF 434 >gi|161526230|ref|YP_001581242.1| flagellar MS-ring protein [Burkholderia multivorans ATCC 17616] gi|189349056|ref|YP_001944684.1| flagellar MS-ring protein [Burkholderia multivorans ATCC 17616] gi|160343659|gb|ABX16745.1| flagellar M-ring protein FliF [Burkholderia multivorans ATCC 17616] gi|189333078|dbj|BAG42148.1| flagellar M-ring protein [Burkholderia multivorans ATCC 17616] Length = 587 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 114/390 (29%), Positives = 195/390 (50%), Gaps = 24/390 (6%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA Sbjct: 79 LWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPAAQVHETRLKLAAL 138 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D FG++ F +++ RALEGE+ RTI+SI+ + ARVH+ +P Sbjct: 139 GLPKGGA-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLAIPK 196 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + V +AI +V++ VP++ +VT++D G LLT Sbjct: 197 PSVFVRDREAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGNLLT 256 Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 + L VQ ++ + I+ LA G N RS V A+++ + Y Sbjct: 257 QPASATGLDASQLKYVQQVERNTQKRIDAILAPIFGAGNARSQVSADIDFSKLEQTSESY 316 Query: 279 DPD-SKVERSIRLSKDAQRSETSQ--------------PESAVTVEQNMPHVSDRKVPLP 323 P+ S + +IR + + +E +Q P+ A + P V+ P Sbjct: 317 GPNGSPQQAAIRSQQTSTSTELAQSGASGVPGALSNTPPQPA-----SAPIVAGNGANAP 371 Query: 324 RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS 383 ++ +D+K++ +NYE++ ++RLS+AVVVN + + G Q + Sbjct: 372 QTTPVSDRKDQTTNYELDKTIRHVEQPMGTVKRLSVAVVVNYQPVADAKGHVTMQPLPPA 431 Query: 384 YLAEINKIVSAATGINSRRGDTITITSMDF 413 LA+I ++V A G +++RGD++ + + F Sbjct: 432 KLAQIEQLVKDAMGYDAKRGDSVNVMNSAF 461 >gi|313895975|ref|ZP_07829529.1| flagellar M-ring protein FliF [Selenomonas sp. oral taxon 137 str. F0430] gi|312975400|gb|EFR40861.1| flagellar M-ring protein FliF [Selenomonas sp. oral taxon 137 str. F0430] Length = 526 Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 128/459 (27%), Positives = 227/459 (49%), Gaps = 33/459 (7%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 R R ++L S + + ++F + ++ + P L+ +E D ++ L EA I + + D Sbjct: 18 RQRYIMLGSALAILALIFGLSFWYGSKPDMVPLFTDMETKDAGEVANQLREAKISYEVQD 77 Query: 79 --NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136 NG++I VP++ V +AR++LA QGLP N G+E+FD + G+T F + ++AL+ Sbjct: 78 GKNGTTILVPTTNVHEARLNLATQGLPRG--NKGFEIFDD-SKLGVTEFQNRVNYLQALQ 134 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS---VYKSAEAIRH 193 GE+ RTI+ I + ARVHIV+P+ ++K TAS+M+R + PS K + I + Sbjct: 135 GELTRTIEQIDAVEKARVHIVLPEDSLYKKEEKPATASIMLR-LKPSTELTKKEIKGIVN 193 Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLS---IVQAIQHEIEMNINKA 248 L A +V L ++T++D TGK+L ++ E+++ K+L+ + + +Q IE + Sbjct: 194 LAAHSVKGLTPENITIVDDTGKILNDPDDQDEKSVGVKTLTQLDMTRKVQDNIEKKVQSL 253 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQRSETSQPESA 305 L LG + V EL+ D + + + P D+ + RS + + ++ P Sbjct: 254 LDQTLGEGRAVARVSVELDFDDRLTDKQTFTPVVDDAGIIRSQQDISENYTGSSTNPGGP 313 Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365 V+ N+P +++ E KKE NYEIN + + RL++AV+VN Sbjct: 314 AGVQSNVPGYVEQESNANAQYE---KKESTKNYEINEERQHVIASPGSIRRLTVAVLVND 370 Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425 Q + +S L + VS+A GIN RGDTI++ + F + + Sbjct: 371 ---------DVTQPQQESIL----RTVSSAAGINQARGDTISVEPLPFSKEAAERRAAEE 417 Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 + D R F + ++ ++ ++ L +RL Sbjct: 418 QAEKDRQDRIFYAQVGIVLLIIALIVGGILMYRRKKRLE 456 >gi|289548426|ref|YP_003473414.1| flagellar M-ring protein FliF [Thermocrinis albus DSM 14484] gi|289182043|gb|ADC89287.1| flagellar M-ring protein FliF [Thermocrinis albus DSM 14484] Length = 496 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 129/405 (31%), Positives = 205/405 (50%), Gaps = 45/405 (11%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LIL+ + ++ + +S Y LY L D++ + L + + +++ +G S Sbjct: 23 LILSGAVAAGLISLLLMVLLASSARYVPLYSGLSQEDMSAVLSELEKEGVPYKLGGDGRS 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 + VP V R+ LAA+G+PS GYE+FDK N F ++ F ++ RA+EGE+A+T Sbjct: 83 VLVPEDKVRDIRLKLAAKGIPSKGV-VGYEIFDKSN-FAVSDFQNQVNFKRAVEGELAKT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLVAAAV 199 I I G+ A+V+I MP F + +PTASV++R + P S E AIR+LVA +V Sbjct: 141 IMRIQGVEEAKVNIGMPQRSIFVREEEQPTASVLVR-LKPGYELSPEQVKAIRNLVALSV 199 Query: 200 PNLDMGDVTVLDSTGKLLTA---NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVD 256 P LD +V V+D G+ LT+ EM ++ + L I + + ++E + K L LGV Sbjct: 200 PRLDPKNVVVIDDRGRDLTSLLGEEM--DLTERELRIKREYEEQVEKKLQKILEEALGVG 257 Query: 257 NFRSAVVAELNMDTQQIREIVYDPD--------SKVERSIRLSKDAQRSETSQPESAVTV 308 N + V A++++ ++ +E +YDPD K ER + + S A V Sbjct: 258 NVKVRVSADIDLTRRESKEEIYDPDMTAVVSQQKKKERVLGGTLGGVPGTASNIPPATGV 317 Query: 309 EQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368 +S+R E +NYE++ K I T K+ RLS+ VVVN +L Sbjct: 318 GAGGQTLSER-------------TETITNYEVSKKQIYTEEPLVKVRRLSVGVVVN-SQL 363 Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 V +DS I ++V A GI+ RRGDTI++ ++ F Sbjct: 364 KNV--------NLDS----IRELVQTAAGIDQRRGDTISVVAVPF 396 >gi|292669732|ref|ZP_06603158.1| flagellar M-ring protein FliF [Selenomonas noxia ATCC 43541] gi|292648529|gb|EFF66501.1| flagellar M-ring protein FliF [Selenomonas noxia ATCC 43541] Length = 526 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 120/408 (29%), Positives = 208/408 (50%), Gaps = 33/408 (8%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 R R ++L S + + +++F + ++ + P L+ +E D ++ L E+ I + I + Sbjct: 18 RQRYIMLGSALAILVLIFGLSFWYGSKPDMVPLFTDMETKDAGEVAKQLRESKISYEIQE 77 Query: 79 N--GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136 N G++I VP++ V +AR++LA QGLP N G+E+FD + G+T F + ++AL+ Sbjct: 78 NKSGTTILVPTTNVHEARLNLATQGLPRG--NKGFEIFDD-SKLGVTEFQNRVNYLQALQ 134 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS---VYKSAEAIRH 193 GE+ RTI+ I + ARVHIV+P+ ++K TAS+M+R + P+ K + I + Sbjct: 135 GELTRTIEQIEAVEKARVHIVLPEDSLYKKEEKPATASIMLR-LKPNAELTKKEIKGIVN 193 Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILG----KSLSIVQAIQHEIEMNINKA 248 L A +V L ++T++D TGK+L ++ + N +G L + + +Q IE + Sbjct: 194 LAAHSVKGLMPENITIVDDTGKILNDPDDQDENAIGVKTLTQLDMTRKVQDNIEKKVQSL 253 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQRSETSQPESA 305 L LG + V EL+ D + + P D+ + RS + ++ ++ P Sbjct: 254 LDQTLGEGRAFARVSVELDFDDRLTDRQTFTPVVDDAGIIRSQQDISESYVGNSTNPGGP 313 Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365 V+ N+P +++ E KKE NYEIN + + RL++AV+VN Sbjct: 314 AGVQSNVPGYVEQEANANAEYE---KKESTKNYEINEERQHVIASPGSIRRLTVAVLVND 370 Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 Q + +S L + VS+A GIN RGDTI++ + F Sbjct: 371 ---------DVTQPQQESIL----RTVSSAAGINPTRGDTISVEPLPF 405 >gi|330818622|ref|YP_004362327.1| Flagellar M-ring protein FliF [Burkholderia gladioli BSR3] gi|327371015|gb|AEA62371.1| Flagellar M-ring protein FliF [Burkholderia gladioli BSR3] Length = 599 Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 114/391 (29%), Positives = 192/391 (49%), Gaps = 24/391 (6%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL ++NI ++ +D G +I VP+S+V + R+ LA+ G Sbjct: 86 WSRAPDYKVLYSNLSDRDGGAIIAALQQSNIPYQFTDAGGAILVPASLVHETRLKLASMG 145 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RTI SI+ + AARVH+ +P Sbjct: 146 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELERTIASINAVRAARVHLAIPKP 203 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV + V + AI +VA+ VP++ +VT++D G LL+ Sbjct: 204 SVFVREREAPSASVFVDLYPGRVLDDGQVLAITRMVASGVPDMPAKNVTIVDQDGNLLSQ 263 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + + L VQ ++ + I+ LA G N R+ V A+++ + + Sbjct: 264 QQSAAGLDANQLKYVQQVERNTQKRIDAILAPMFGAGNTRAQVSADVDFSRAEQTSESFS 323 Query: 280 PD-SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT--------- 329 P+ ++ + +IR + + +E SQ + +P P P S T Sbjct: 324 PNGTQQQAAIRSQQTSSSTEMSQSGAG-----GVPGALSNTPPQPASAPITGASGAAGTP 378 Query: 330 -----DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY 384 D+K+ +NYE+N ++RLS+AVVVN + + G Q Sbjct: 379 PTPISDRKDSTTNYELNKTVSHVEQATGGIKRLSVAVVVNNLPVADAKGHVTMQPLSADK 438 Query: 385 LAEINKIVSAATGINSRRGDTITITSMDFLE 415 L ++ ++V A G +++RGD++ + + F E Sbjct: 439 LRQVEQLVKDAMGFDAKRGDSVNVVNSQFTE 469 >gi|302878299|ref|YP_003846863.1| flagellar M-ring protein FliF [Gallionella capsiferriformans ES-2] gi|302581088|gb|ADL55099.1| flagellar M-ring protein FliF [Gallionella capsiferriformans ES-2] Length = 566 Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 127/408 (31%), Positives = 207/408 (50%), Gaps = 39/408 (9%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92 I L + A + +P Y LY L D I +L + NI ++ +D G ++ +P+ V + Sbjct: 37 IALIVGAWMWGQTPDYRILYSNLSDRDGGAIIESLQQLNIPYKFADGGGALMIPADQVHE 96 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 AR+ LA+QGLP + G+EL + FG+T F +++ RALEGE+AR++QSI + +A Sbjct: 97 ARLKLASQGLPKGGT-VGFELMEN-QKFGITQFAEQVNYQRALEGELARSVQSIGAVASA 154 Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVL 210 RVH+ +P F K +P+ASV++ + SA+ AI HL++++VP++ +VT++ Sbjct: 155 RVHLAIPKPSVFIKEQQKPSASVVLTLHGGRLLDSAQVTAIVHLISSSVPDMSAKNVTIV 214 Query: 211 DSTGKLLTANEMERNILG---KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELN 267 D G LL++ + + N LG L VQ I+ I L LG +N + V A ++ Sbjct: 215 DQDGSLLSSLQ-DSNGLGLDANQLKYVQQIEQNYIKRIEDILTPLLGANNVHAQVTANID 273 Query: 268 MD-TQQIREIVYDPD-SKVERSIRLSKDAQRSET----------------SQPESAVT-- 307 T+Q E Y P+ + + S+R Q SET +QP T Sbjct: 274 FARTEQTAE-TYKPNQNPADSSVR---SLQNSETLNGSGLNASGVPGALSNQPPVPATAP 329 Query: 308 VEQNMPHVSDRKVPLPRSLENTDK--KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365 + P +D P + D KE NYE++ T ++RLS+AVVVN Sbjct: 330 IVSAPPGATD-----PANAPKIDNLHKENTINYEVDRTISHTILPVGMIKRLSVAVVVNN 384 Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 + T+ G+ + + D+ A+I+ +V A G + RGD++ I + F Sbjct: 385 RKATDPKGKVSSKPLTDAEKAQIDNLVKDAVGFDKNRGDSLNIQNAAF 432 >gi|238755308|ref|ZP_04616651.1| Flagellar M-ring protein [Yersinia ruckeri ATCC 29473] gi|238706444|gb|EEP98818.1| Flagellar M-ring protein [Yersinia ruckeri ATCC 29473] Length = 574 Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 151/552 (27%), Positives = 256/552 (46%), Gaps = 73/552 (13%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + SP Y LY L D I L++ NI +R ++NG ++ +P+ V + R+ LA Q Sbjct: 48 LWAKSPDYRVLYSNLSDRDGGAIVTQLTQLNIPYRFAENGGALLIPADKVHETRLRLAQQ 107 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F ++I RALEGE++RTI+++ ++ RVH+ MP Sbjct: 108 GLPKGGA-VGFELLDQ-EKFGISQFSEQINYQRALEGELSRTIETLGPVLNVRVHLAMPK 165 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + P+ASV + RA++ AI ++V+++V L G+VTV+D TG+ Sbjct: 166 PSLFVREQKSPSASVTLTLQPGRALDDG---QINAIVYMVSSSVAGLPPGNVTVVDQTGR 222 Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT ++ R++ L ++ + I LA +G N + V A+++ T++ Sbjct: 223 LLTQSDSAGRDLNAAQLKFTNEVEVRFQRRIESILAPMVGNGNVHAQVTAQVDFATREQT 282 Query: 275 EIVYDPDSKVE----RSIRLSKDAQRSET----------SQPES--AVTVEQNMPHVSDR 318 + Y P+ + E RS +LS+ Q T +QP + A +E + Sbjct: 283 DEEYKPNQRPEQGAVRSQQLSQSEQVGGTPIGGVPGALSNQPSATPAAPIETPAAPGATG 342 Query: 319 KVPL-----------------PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 ++ + +++E +NYE++ T ++RLS+AV Sbjct: 343 AAANTATATPATRNTSAGTAGKNAVPGSSRRDETTNYEVDRTIRHTQQQAGMVQRLSVAV 402 Query: 362 VVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 VVN LG GK LA+I + A G +++RGDT+ + + F E + Sbjct: 403 VVN------YLGIDKKSGKPIALSKDQLAQIEALTREAMGFSTQRGDTLNVVNTPFTEAE 456 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 NS + F S F V+NA +L+ L+ L +R L AKK EV Sbjct: 457 ETNSA---LPFWKSQS-FFDQVLNAGRYLLILLVAWILWRKLVRPLM----AKKMEVN-- 506 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 P I++A T + SN D + + Q R+++ V Q R+ + + Sbjct: 507 -----PVIAAAKTVAQTAEAAESAKQSN-DELAQRKKSQQRVSAEVQAQ---RIRELADK 557 Query: 538 NEERFAKILRKW 549 + A ++R+W Sbjct: 558 DPRVVALVIRQW 569 >gi|67641495|ref|ZP_00440272.1| flagellar M-ring protein FliF [Burkholderia mallei GB8 horse 4] gi|121601133|ref|YP_994240.1| flagellar MS-ring protein [Burkholderia mallei SAVP1] gi|124383455|ref|YP_001028106.1| flagellar MS-ring protein [Burkholderia mallei NCTC 10229] gi|126448962|ref|YP_001082916.1| flagellar MS-ring protein [Burkholderia mallei NCTC 10247] gi|161579508|ref|YP_104753.2| flagellar MS-ring protein [Burkholderia mallei ATCC 23344] gi|167004331|ref|ZP_02270091.1| flagellar M-ring protein FliF [Burkholderia mallei PRL-20] gi|254175223|ref|ZP_04881884.1| flagellar M-ring protein FliF [Burkholderia mallei ATCC 10399] gi|254201855|ref|ZP_04908219.1| flagellar M-ring protein FliF [Burkholderia mallei FMH] gi|254207184|ref|ZP_04913535.1| flagellar M-ring protein FliF [Burkholderia mallei JHU] gi|254359688|ref|ZP_04975959.1| flagellar M-ring protein FliF [Burkholderia mallei 2002721280] gi|121229943|gb|ABM52461.1| flagellar M-ring protein FliF [Burkholderia mallei SAVP1] gi|124291475|gb|ABN00744.1| flagellar M-ring protein FliF [Burkholderia mallei NCTC 10229] gi|126241832|gb|ABO04925.1| flagellar M-ring protein FliF [Burkholderia mallei NCTC 10247] gi|147747749|gb|EDK54825.1| flagellar M-ring protein FliF [Burkholderia mallei FMH] gi|147752726|gb|EDK59792.1| flagellar M-ring protein FliF [Burkholderia mallei JHU] gi|148028902|gb|EDK86834.1| flagellar M-ring protein FliF [Burkholderia mallei 2002721280] gi|160696268|gb|EDP86238.1| flagellar M-ring protein FliF [Burkholderia mallei ATCC 10399] gi|238522438|gb|EEP85882.1| flagellar M-ring protein FliF [Burkholderia mallei GB8 horse 4] gi|243060331|gb|EES42517.1| flagellar M-ring protein FliF [Burkholderia mallei PRL-20] Length = 598 Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 115/391 (29%), Positives = 191/391 (48%), Gaps = 27/391 (6%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 81 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 140 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++S + + AARV++ +P Sbjct: 141 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESSNAVRAARVYLAIPKP 198 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ V + A+ +V+++VP++ +VT++D G LLT Sbjct: 199 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 258 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 259 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 318 Query: 280 PDSKVERS-IRLSKDAQRSE----------------TSQPESAVTVEQNMPHVSDRKVPL 322 P+ ++S IR + + +E QP SA V N P+ Sbjct: 319 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 378 Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382 +D+K+ +NYE++ ++RLS+AVVVN T+ GR Q Sbjct: 379 ------SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAA 432 Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413 LA++ ++V A G + +RGD++ + + F Sbjct: 433 DKLAQVQQLVKDAMGYDEKRGDSVNVVNSAF 463 >gi|284007155|emb|CBA72437.1| flagellar M-ring protein FliF [Arsenophonus nasoniae] Length = 554 Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 125/417 (29%), Positives = 204/417 (48%), Gaps = 42/417 (10%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A + I F+AA F++ Y +Y L D I LS+ NI +++S +GS Sbjct: 30 LIVAGALA--ITFFIAAMFWLQGADYRPVYTNLSDKDGGEIVTQLSQMNIPYQLSADGSM 87 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 + VP+ V + R+ LA QGLP N+G+EL D+ FGL+ F ++I RALEGE+A+T Sbjct: 88 VKVPADQVHEVRLKLAQQGLP-KGGNAGFELLDQ-EKFGLSQFSEQINYQRALEGELAKT 145 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I+S+ + ARVH+ +P F + PTASV + N + AI H+++++V Sbjct: 146 IESLGVVQRARVHLAIPKPSLFVREQKNPTASVTLNLQNGRKLDEGQIAAIVHMISSSVS 205 Query: 201 NLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L +VT++D G LLT + + R++ L+ VQ+I++ + I + +G N Sbjct: 206 GLASSNVTIVDQLGNLLTQPDGISRDLNLTQLNYVQSIENRYKQRIESIIMPLVGRGNVH 265 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE--------------TSQPESA 305 + V A++N + Y P+ S SK RSE ++QP A Sbjct: 266 AQVTAQINFARTEETAEEYKPNQPPNESAVRSKQTSRSEQNGQLLVGGVPGALSNQPTPA 325 Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365 + P+ D+ P P + + + +E +NYEI+ + T H L+RLS+A++VN Sbjct: 326 PKAPIDKPN--DKNAPQPINNNHNSRVDETTNYEIDRRIRHTQHQIGNLQRLSVAIIVN- 382 Query: 366 GRLTEVLGRSADQGK---------IDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AD K D L +I + A + +RGD++ + + F Sbjct: 383 ---------YADSDKKENDDSLPLTDEKLTQIKTLAQEAMEFSEQRGDSLYVVNAPF 430 >gi|315497627|ref|YP_004086431.1| flagellar m-ring protein flif [Asticcacaulis excentricus CB 48] gi|315415639|gb|ADU12280.1| flagellar M-ring protein FliF [Asticcacaulis excentricus CB 48] Length = 561 Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 132/413 (31%), Positives = 212/413 (51%), Gaps = 28/413 (6%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110 LY L++ + + I+ AL +A I ++ +GS++ V VG+ R+ LA++GLP++ S G Sbjct: 41 LYSNLDLKEASEITAALDQAGIKYQAKGDGSTLMVDRDTVGETRLMLASKGLPTAGS-VG 99 Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170 YELFDK + G T F+Q + RALEGE+ARTI ++ GI +ARVH+VMP F++ A Sbjct: 100 YELFDKAPALGQTEFVQNLNNQRALEGELARTIATLKGINSARVHLVMPKRELFQEEAAA 159 Query: 171 PTASVMIRAINPSVY-KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK 229 PTASV++ N + + AIR+LVA AVPNL VT++D +LL A + N+LG Sbjct: 160 PTASVVVGLSNTELSGEQVRAIRNLVAGAVPNLKANAVTLVDDKNRLLAAGGEDDNLLGA 219 Query: 230 SLSIVQA-IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288 + + I+ + + + +G R V A++++++ + YDPD +V RS Sbjct: 220 GGAERKTEIEETLRKRVKDIVEGVVGPGAARVTVTADIDLNSLTREQTQYDPDGQVVRST 279 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN-TDKKEEQSNYEI-NTKSIA 346 R S + VT + N+P P + N ++ E +NYEI NTK+ Sbjct: 280 RTDTSTDSSTDNANNGTVTAQANIP--GGAAAPGQGTTGNQSETTGELTNYEISNTKTTE 337 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY-------LAEINKIVSAATGIN 399 +++L++AVVV+ G T +AD +Y + +I ++V AA G Sbjct: 338 VIAPG-AIKKLAVAVVVD-GTWTP----AADGKSPPTYAPRSAQDMQQIEELVRAAIGYT 391 Query: 400 SR-------RGDTITITSMDFLENQLFNSGTVQVSFM-DILSRHFATVINALV 444 + R D + +T++ F + GT + M D T I L+ Sbjct: 392 DQTATNPNGRKDELKVTNIRFARDAAGLGGTTASAGMFDFTKDDIVTAIQWLI 444 >gi|298530643|ref|ZP_07018045.1| flagellar M-ring protein FliF [Desulfonatronospira thiodismutans ASO3-1] gi|298510017|gb|EFI33921.1| flagellar M-ring protein FliF [Desulfonatronospira thiodismutans ASO3-1] Length = 532 Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 125/425 (29%), Positives = 220/425 (51%), Gaps = 23/425 (5%) Query: 21 RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80 RIL+ A + L I F FF+ P Y L L D +R+ L N+ +++ D+G Sbjct: 24 RILV-AGLGLSVIAAFAFLMFFITRPDYRVLSSDLYPEDASRVVEILESENVRYQLEDDG 82 Query: 81 SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140 ++I VP+ V K R+ ++ +G+ G+ELFD G T F+Q + RAL+GE+A Sbjct: 83 TTILVPADQVHKMRLAISGEGV-LRGEGMGFELFDDTG-IGQTDFVQNVNYQRALQGELA 140 Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAA 198 RTI S + ARVH+VMP+ F + P+AS++++ + +S+ ++I +LV Sbjct: 141 RTISEFSEVEHARVHLVMPERSLFIEEETPPSASIVLQLRSGQRLESSQIQSIVNLVVTG 200 Query: 199 VPNLDMGDVTVLDSTGKLLTANEMERNIL-GKSLSIVQA---IQHEIEMNINKALAAFLG 254 V +D VT+ D++G++L E ++++L G S + ++ Q ++E I L F G Sbjct: 201 VEGMDSDRVTISDTSGRVLY--EPQKDLLDGMSSTQLEYQLNFQRDLERRIEHMLTPFAG 258 Query: 255 VDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPH 314 + V A+L+ D + R+ ++DPD V RS QRS T + +E+ +P Sbjct: 259 PGRVIAKVNADLDFDRRTTRQEIFDPDGSVVRS------EQRS-TEESSGGTFMEEGVPE 311 Query: 315 VS-DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373 + P + + T + + +N+EI+ + ++RLS+AV+V+ +T+ G Sbjct: 312 PDFQQGFEGPATTQETSRSDRTTNFEISREEHNIVASVGSVDRLSVAVLVDGQHVTDDAG 371 Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433 + D + I ++V A G + RGD+I ++S+DF ++ T+ MD L+ Sbjct: 372 EMVYEPLADEEMQRIQQLVERAVGFDQERGDSIEVSSVDFGAPEVEPEPTL----MDNLA 427 Query: 434 RHFAT 438 ++F T Sbjct: 428 QYFQT 432 >gi|119899006|ref|YP_934219.1| flagellar MS-ring protein [Azoarcus sp. BH72] gi|119671419|emb|CAL95332.1| flagellar M-ring protein [Azoarcus sp. BH72] Length = 562 Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 119/396 (30%), Positives = 191/396 (48%), Gaps = 23/396 (5%) Query: 36 FMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARI 95 + A + P Y L+ L+ D ++ AL + N+ +R+S NG SI VP V + R+ Sbjct: 49 IVGALMWNRQPDYGVLFSNLDERDGGQVIAALQQQNVPYRMSPNGLSILVPQEQVHELRL 108 Query: 96 HLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVH 155 LAA GLP G+EL D G++ F +++ RALEGE++RTIQSI+ + AARVH Sbjct: 109 RLAAAGLPRGGL-VGFELMD-TQKLGVSQFNEQVNYQRALEGELSRTIQSIAAVAAARVH 166 Query: 156 IVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDS 212 + MP +F + +PTASVM+ + P A I HLV+++VP + V ++D Sbjct: 167 LAMPKQTAFLRDDQKPTASVMV-TLRPGRVLDANQVAGIVHLVSSSVPRMVESGVNIIDQ 225 Query: 213 TGKLLTANE---MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 G+LLT + + L V+ ++ I L +G +NFR+ V A+++ + Sbjct: 226 NGELLTTKNDPLRQTGLDATQLEYVKEVEAGFIRRIENILQPMVGKNNFRAQVAADVDFN 285 Query: 270 TQQIREIVYDPDSKVERSIRLSKDAQRSE------------TSQPESAVTVEQNMPHVSD 317 + + P+ +++IR + + + ++QP T P V Sbjct: 286 QVEQTAETFKPNPSPDQAIRSQQTTEETNRQPGPQGVPGALSNQPPVPATAPITTPPVGP 345 Query: 318 RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSAD 377 + ++ T + NYE++ +L+RLS+AVVVN T G++ Sbjct: 346 NQAGAAQT--GTTSRSAVLNYEVDRTIQHVKQSLGQLKRLSVAVVVNHRTETLPNGQTQT 403 Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 D +A IN +V A G N RGDTI + S F Sbjct: 404 VPLTDEEVARINNLVREAVGYNPARGDTINVASSPF 439 >gi|52428288|gb|AAU48881.1| flagellar M-ring protein FliF [Burkholderia mallei ATCC 23344] Length = 543 Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 115/391 (29%), Positives = 191/391 (48%), Gaps = 27/391 (6%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 26 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 85 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++S + + AARV++ +P Sbjct: 86 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESSNAVRAARVYLAIPKP 143 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ V + A+ +V+++VP++ +VT++D G LLT Sbjct: 144 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 203 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 204 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 263 Query: 280 PDSKVERS-IRLSKDAQRSE----------------TSQPESAVTVEQNMPHVSDRKVPL 322 P+ ++S IR + + +E QP SA V N P+ Sbjct: 264 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 323 Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382 +D+K+ +NYE++ ++RLS+AVVVN T+ GR Q Sbjct: 324 ------SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAA 377 Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413 LA++ ++V A G + +RGD++ + + F Sbjct: 378 DKLAQVQQLVKDAMGYDEKRGDSVNVVNSAF 408 >gi|167568365|ref|ZP_02361239.1| flagellar MS-ring protein [Burkholderia oklahomensis C6786] Length = 554 Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 114/391 (29%), Positives = 191/391 (48%), Gaps = 27/391 (6%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G ++ VP++ V + R+ LA+ G Sbjct: 37 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAVLVPANQVHETRLKLASMG 96 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RTI+SI+ + +ARVH+ +P Sbjct: 97 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTIESINTVRSARVHLAIPKP 154 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ V + A+ +V+++VP++ +VT++D G LLT Sbjct: 155 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 214 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 215 TASASGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 274 Query: 280 PDSKVERS-IRLSKDAQRSE----------------TSQPESAVTVEQNMPHVSDRKVPL 322 P+ +++ IR + + +E QP SA V N P+ Sbjct: 275 PNGAPQQTAIRSQQTSTATELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 334 Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382 +D+K+ +NYE++ ++RLS+AVVVN + GR Q Sbjct: 335 ------SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPAADAKGRVTMQPLTA 388 Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413 LA+I ++V A G + +RGD++ + + F Sbjct: 389 EKLAQIQQLVKDAMGYDEKRGDSVNVVNSAF 419 >gi|310764888|gb|ADP09838.1| Flagellar basal-body M-ring protein [Erwinia sp. Ejp617] Length = 561 Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 128/452 (28%), Positives = 218/452 (48%), Gaps = 46/452 (10%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 F+ P Y L+ + D I LS+ N+ +RI G +I VP + V + R+ +A Q Sbjct: 47 FWAKEPGYRVLFNNVSDEDGGAIVSQLSQMNVPYRIDTPGGAIMVPEAQVHEVRMKMAQQ 106 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S G+EL D+ FG++ F +++ RALEGE+ARTI+++ I ARVH+ +P Sbjct: 107 GLPKGGS-VGFELLDQ-EKFGISQFSEQVNFQRALEGELARTIENLGPIQHARVHLAVPK 164 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + +PTASV + + AI HL+++AV L G+VT++D G LLT Sbjct: 165 PSMFVRDQKQPTASVNVTLAQGRTLDDGQVTAITHLISSAVSGLPAGNVTLVDQRGNLLT 224 Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 + + + I+ + + I + LA +G N R+ V A+L+ Q+ + Y Sbjct: 225 QSGTGA-LQSSQVKYTNEIEADYQQRIQRLLAPLVGDSNVRTQVTAQLDFTQQERTDEQY 283 Query: 279 DPDSKVER-SIRLSKDAQRSE-------------TSQPESAVTVEQNMP---------HV 315 P+++ E+ +IR + +Q ++ ++QP + T P + Sbjct: 284 QPNAEREKMAIRSRQSSQAAQGNGRGAGGVPGALSNQPPTPATAPLTKPLNAPAANGKNA 343 Query: 316 SDRKVPLPRSLEN--TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373 ++ K P + ++ +E +NYE++ I T ++RLS+AVV+N G Sbjct: 344 NNEKTPAAGEVAQPYNNRNDETTNYELDRTLIHTKTSVGHIQRLSVAVVINH----MAQG 399 Query: 374 RSADQGKIDSY-LAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDIL 432 G + + LA IN +V A G + +RGD+I I + F +G + + Sbjct: 400 AEGKPGPLPAAELARINTLVKEAIGYSEQRGDSINIVNSPF-------NGVAEEVMPPLW 452 Query: 433 SRH-FATVINALVFLVGTLLVTFLGLHALRRL 463 +H F T+ ++ L L++ +G RRL Sbjct: 453 QQHSFQTL---MMTLARYLVIAIIGWVMWRRL 481 >gi|94987299|ref|YP_595232.1| flagellar biosynthesis/type III secretory pathway lipoprotein [Lawsonia intracellularis PHE/MN1-00] gi|94731548|emb|CAJ54911.1| Flagellar biosynthesis/type III secretory pathway lipoprotein [Lawsonia intracellularis PHE/MN1-00] Length = 554 Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 126/408 (30%), Positives = 208/408 (50%), Gaps = 23/408 (5%) Query: 21 RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80 ++ I S + V ++F+ F++N Y LY L D N I L + ++++DNG Sbjct: 24 KLFIGGSAVFV-TLIFIGLMFWINRTDYKVLYSNLGPEDANHIIKTLQADKVSYQLADNG 82 Query: 81 SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140 +I VP+S V RI +A +G S G+E+FD VN G T F+Q I RAL+GE++ Sbjct: 83 KTILVPASSVYDLRIKIAGEG-GMVGSGIGFEIFDAVN-VGQTDFVQRINYQRALQGELS 140 Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV---YKSAEAIRHLVAA 197 RTI + +ARVH+V+P F + +P+ASV+++ NPS K + + +++ Sbjct: 141 RTISEFPNVESARVHLVIPQRSLFIEEQQKPSASVVLKLKNPSRKMDQKEVQGMVNMLVM 200 Query: 198 AVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ-----AIQHEIEMNINKALAAF 252 AV LD V++ DS GK L E N+ G LS+ Q ++ +E I++ L Sbjct: 201 AVEGLDKEHVSITDSLGKPLYFPN-EDNLAG--LSVTQREYKLKVEQGLERRIDELLIPL 257 Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNM 312 +G + V +L+ + + IR +YDP+S V RS + S++ R +++ +E Sbjct: 258 MGQGKVIAKVNVDLDFNQKTIRREIYDPNSSVIRSEQRSEETNRGQSN-------LESGS 310 Query: 313 PHVSDRKVPLPRSLENTDKKEE--QSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTE 370 P V+ R ++ + E +NYEIN + + ++ R+++AVVV+ + E Sbjct: 311 PDVNFRGDGPNGAMSTQEGTRETRTTNYEINREEQNIVGEVGQINRMTVAVVVDGTYVKE 370 Query: 371 VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 G + L I +VS A G + RGDTI ++S+ F E L Sbjct: 371 PNGEYKFVPRSQEELNRIRLLVSHAIGFDRARGDTIEVSSIPFDEADL 418 >gi|329888114|ref|ZP_08266712.1| flagellar M-ring protein FliF [Brevundimonas diminuta ATCC 11568] gi|328846670|gb|EGF96232.1| flagellar M-ring protein FliF [Brevundimonas diminuta ATCC 11568] Length = 545 Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 118/373 (31%), Positives = 192/373 (51%), Gaps = 19/373 (5%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110 LY L++ + + IS AL +A I + +GS+I V VG AR+ LA +GL +S S G Sbjct: 45 LYSNLDLREASEISAALDQAGIKYSSKGDGSTIFVSRDEVGTARLMLAGKGLVTSGS-VG 103 Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170 YE+FD + G T F Q + RAL+GE+ARTI S+ GI +ARVHI MP F+ Sbjct: 104 YEIFDNQSVLGQTEFQQNLNEQRALQGELARTIMSMRGISSARVHITMPRREMFQAAAID 163 Query: 171 PTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK 229 PTA+V++ + AIR++VA++VPNL VTV D + L A + Sbjct: 164 PTAAVVVGLSGRDLSADQVRAIRNVVASSVPNLKPDKVTVTDQANRTLAAGSEDTGFTSA 223 Query: 230 SLSIVQA-IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288 + +A + +++ I + +G R V A+++ +E +DPD +V RS Sbjct: 224 TAEASKASTEAQMQARIKDIVEGVVGAGAARVQVTADIDHSRSTTQEQKFDPDGQVVRST 283 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKE-EQSNYEINTKSIAT 347 + + T Q + VT N+P + P + +T+ + E +NYEI+ + T Sbjct: 284 STNGSQSQDTTGQQDGGVTATNNIPG---GQAPNTTPIGSTNSENTETTNYEISNTTTTT 340 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLA-------EINKIVSAATGINS 400 + ++++LS++V V+ G+ T +AD +Y A +I +V+AA GI+ Sbjct: 341 VKEPGEVKKLSVSVAVD-GKYTP----AADGKGEPTYAARTAEEVQQIKALVAAAVGIDE 395 Query: 401 RRGDTITITSMDF 413 RGD + + ++ F Sbjct: 396 TRGDKLEVVNVRF 408 >gi|325981191|ref|YP_004293593.1| flagellar M-ring protein FliF [Nitrosomonas sp. AL212] gi|325530710|gb|ADZ25431.1| flagellar M-ring protein FliF [Nitrosomonas sp. AL212] Length = 571 Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 143/489 (29%), Positives = 232/489 (47%), Gaps = 64/489 (13%) Query: 15 TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF 74 +SL + L L + I L + A + +P Y LY L D I AL + N+ + Sbjct: 23 SSLSNQKKLGLITSAAAVIALLVGALMWSQAPEYRALYNNLSDHDGAAIISALQQMNVPY 82 Query: 75 RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134 S++G +I +P V + R+ LA QGLP G+EL + FG + F++++ RA Sbjct: 83 TFSESGGTILIPEKQVHEVRLKLAGQGLPKGGL-VGFELMEN-QKFGSSQFLEQVNYQRA 140 Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AI 191 LEGE+AR++QS+S + +ARVH+ + F + +P+ SV++ + P S E AI Sbjct: 141 LEGELARSVQSLSAVQSARVHLAIAKPSVFSREKQQPSVSVLLN-LYPGRVLSIEQVSAI 199 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKA 248 HL+A++VPNL + +VTV+D G LL++ ++ K L+ +Q ++ I Sbjct: 200 VHLMASSVPNLPVKNVTVVDQNGNLLSSQNDKKEDSRFDAKQLAYIQELEENYIRRIETI 259 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS-------- 300 L G N R+ V A+++ + E Y P++ + R S +Q++ S Sbjct: 260 LTPITGATNVRAQVTADVDFSRIERAEETYRPNNT--EADRASIRSQQTHESMSIGSKFD 317 Query: 301 ----------QPESAVT-VE-----------QNMPHVSDRKVPLPRSLENTDKKEEQS-N 337 PE A+ +E + +D PLP TDKK+E + N Sbjct: 318 GGIPGALTNRPPEPAIAPIEAGGKKPAGDKAEGDEEETDSTPPLP-----TDKKKESTIN 372 Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG 397 YE++ T ++RLS AVVVN + + G + + EIN +V A G Sbjct: 373 YEVDKTVQHTQQSTGNIKRLSAAVVVNYRKKVDESGAITYEPLSAEEIKEINNLVREAMG 432 Query: 398 INSRRGDTITITSMDFLENQLFNSGT---VQVSFMD-----ILSRHFAT---VINALVFL 446 N RRGD++T+T N LF T ++V F +L++ FA +I ++F Sbjct: 433 YNERRGDSLTVT------NGLFTGETETVLEVPFWKDPDVIMLAKDFAKQLLIIGVVLFF 486 Query: 447 VGTLLVTFL 455 + +L FL Sbjct: 487 LLKILRPFL 495 >gi|320529385|ref|ZP_08030473.1| flagellar M-ring protein FliF [Selenomonas artemidis F0399] gi|320138351|gb|EFW30245.1| flagellar M-ring protein FliF [Selenomonas artemidis F0399] Length = 526 Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 127/459 (27%), Positives = 226/459 (49%), Gaps = 33/459 (7%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 R R ++L S + + ++F + ++ + P L+ +E D ++ L EA I + + D Sbjct: 18 RQRYIMLGSALAILALIFGLSFWYGSKPDMVPLFTDMETKDAGEVANQLREAKISYEVQD 77 Query: 79 --NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136 NG++I VP++ V +AR++LA QGLP N G+E+FD + G+T F + ++AL+ Sbjct: 78 GKNGTTILVPTTNVHEARLNLATQGLPRG--NKGFEIFDD-SKLGVTEFQNRVNYLQALQ 134 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS---VYKSAEAIRH 193 GE+ RTI+ I + ARVHIV+P+ ++K TAS+M+R + P K + I + Sbjct: 135 GELTRTIEQIDAVEKARVHIVLPEDSLYKKEEKPATASIMLR-LKPGTELTKKEIKGIVN 193 Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLS---IVQAIQHEIEMNINKA 248 L A +V L ++T++D TGK+L ++ E+++ K+L+ + + +Q IE + Sbjct: 194 LAAHSVKGLTPENITIVDDTGKILNDPDDQDEKSVGVKTLTQLDMTRKVQDNIEKKVQSL 253 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQRSETSQPESA 305 L LG + V EL+ D + + + P D+ + RS + + ++ P Sbjct: 254 LDQTLGEGRAVARVSVELDFDDRLTDKQTFTPVVDDAGIIRSQQDISENYTGSSTNPGGP 313 Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365 V+ N+P +++ E KKE NYEIN + + RL++AV+VN Sbjct: 314 AGVQSNVPGYVEQESNANAQYE---KKESTKNYEINEERQHVIASPGSIRRLTVAVLVND 370 Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425 Q + +S L + VS+A GIN RGDTI++ + F + + Sbjct: 371 ---------DVTQPQQESIL----RTVSSAAGINQARGDTISVEPLPFSKEAAERRAAEE 417 Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 + D R F + ++ ++ ++ L +RL Sbjct: 418 QAEKDRQDRIFYAQVGIVLLIIALIVGGILMYRRKKRLE 456 >gi|171321708|ref|ZP_02910625.1| flagellar M-ring protein FliF [Burkholderia ambifaria MEX-5] gi|171093009|gb|EDT38241.1| flagellar M-ring protein FliF [Burkholderia ambifaria MEX-5] Length = 587 Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 114/386 (29%), Positives = 191/386 (49%), Gaps = 16/386 (4%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y LY L D I AL +AN+ ++ +D G +I VPS+ V + R+ LAA Sbjct: 79 LWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSNQVHETRLKLAAL 138 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S G+EL D FG++ F +++ RALEGE+ RTI+SI+ + ARVH+ +P Sbjct: 139 GLPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLAIPK 196 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + V +AI +V++ VP++ +VT++D G LLT Sbjct: 197 PSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGNLLT 256 Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 + L VQ ++ + I+ LA G N RS V A+++ + Y Sbjct: 257 QTASASGLDASQLKYVQQVERNTQKRIDAILAPIFGTGNARSQVSADIDFSKLEQTSESY 316 Query: 279 DPDSKVER-SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLP----------RSLE 327 P+ ++ +IR + + +E +Q A V + + + P +S Sbjct: 317 APNGTPQQAAIRSQQTSSATELAQ-GGASGVPGALSNTPPQPASAPIVAGNGQNGAQSTP 375 Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE 387 +D+K++ +NYE++ ++RLS+AVVVN + + G Q LA+ Sbjct: 376 VSDRKDQTTNYELDKTIRHVEQPMGNVKRLSVAVVVNYQPVADAKGHVTMQPLPPPKLAQ 435 Query: 388 INKIVSAATGINSRRGDTITITSMDF 413 I ++V A G + +RGD++ + + F Sbjct: 436 IEQLVKDAMGYDEKRGDSVNVVNSAF 461 >gi|115353160|ref|YP_774999.1| flagellar MS-ring protein [Burkholderia ambifaria AMMD] gi|115283148|gb|ABI88665.1| flagellar M-ring protein FliF [Burkholderia ambifaria AMMD] Length = 587 Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 113/386 (29%), Positives = 191/386 (49%), Gaps = 16/386 (4%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y LY L D I AL +AN+ ++ +D G +I VPS+ V + R+ LAA Sbjct: 79 LWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSNQVHETRLKLAAL 138 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S G+EL D FG++ F +++ RALEGE+ RTI+SI+ + ARVH+ +P Sbjct: 139 GLPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLAIPK 196 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + V +AI +V++ VP++ +VT++D G LLT Sbjct: 197 PSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGNLLT 256 Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 + L VQ ++ + I+ LA G N RS V A+++ + Y Sbjct: 257 QTASASGLDASQLKYVQQVERNTQKRIDSILAPIFGTGNARSQVSADIDFSKLEQTSESY 316 Query: 279 DPDSKVER-SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLP----------RSLE 327 P+ ++ +IR + + +E +Q A V + + + P +S Sbjct: 317 SPNGTPQQAAIRSQQTSSATELAQ-GGASGVPGALSNTPPQPASAPIVAGNGQNGAQSTP 375 Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE 387 +D+K++ +NYE++ ++RLS+AVVVN + + G Q LA+ Sbjct: 376 VSDRKDQTTNYELDKTIRHVEQPMGNVKRLSVAVVVNYQPVADAKGHVTMQPLPPPKLAQ 435 Query: 388 INKIVSAATGINSRRGDTITITSMDF 413 + ++V A G + +RGD++ + + F Sbjct: 436 VEQLVKDAMGYDEKRGDSVNVVNSAF 461 >gi|170700811|ref|ZP_02891802.1| flagellar M-ring protein FliF [Burkholderia ambifaria IOP40-10] gi|170134298|gb|EDT02635.1| flagellar M-ring protein FliF [Burkholderia ambifaria IOP40-10] Length = 587 Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 114/386 (29%), Positives = 191/386 (49%), Gaps = 16/386 (4%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y LY L D I AL +AN+ ++ +D G +I VPS+ V + R+ LAA Sbjct: 79 LWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSNQVHETRLKLAAL 138 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S G+EL D FG++ F +++ RALEGE+ RTI+SI+ + ARVH+ +P Sbjct: 139 GLPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLAIPK 196 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + V +AI +V++ VP++ +VT++D G LLT Sbjct: 197 PSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGNLLT 256 Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 + L VQ ++ + I+ LA G N RS V A+++ + Y Sbjct: 257 QTASASGLDASQLKYVQQVEGNTQKRIDAILAPIFGTGNARSQVSADIDFSKLEQTSESY 316 Query: 279 DPDSKVER-SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLP----------RSLE 327 P+ ++ +IR + + +E +Q A V + + + P +S Sbjct: 317 GPNGTPQQAAIRSQQTSSATELAQ-GGASGVPGALSNTPPQPASAPIVAGNGQNGAQSTP 375 Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE 387 +D+K++ +NYE++ ++RLS+AVVVN + + G Q LA+ Sbjct: 376 VSDRKDQTTNYELDKTIRHVEQPMGNVKRLSVAVVVNYQPVADAKGHVTMQPLPPPKLAQ 435 Query: 388 INKIVSAATGINSRRGDTITITSMDF 413 I ++V A G + +RGD++ + + F Sbjct: 436 IEQLVKDAMGYDEKRGDSVNVVNSAF 461 >gi|167561148|ref|ZP_02354064.1| flagellar MS-ring protein [Burkholderia oklahomensis EO147] Length = 490 Score = 166 bits (421), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 114/391 (29%), Positives = 191/391 (48%), Gaps = 27/391 (6%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G ++ VP++ V + R+ LA+ G Sbjct: 50 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAVLVPANQVHETRLKLASIG 109 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RTI+SI+ + +ARVH+ +P Sbjct: 110 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTIESINTVRSARVHLAIPKP 167 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ V + A+ +V+++VP++ +VT++D G LLT Sbjct: 168 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 227 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 228 TASASGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 287 Query: 280 PDSKVERS-IRLSKDAQRSE----------------TSQPESAVTVEQNMPHVSDRKVPL 322 P+ +++ IR + + +E QP SA V N P+ Sbjct: 288 PNGAPQQTAIRSQQTSTATELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 347 Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382 +D+K+ +NYE++ ++RLS+AVVVN + GR Q Sbjct: 348 ------SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPAADAKGRVTMQPLTA 401 Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413 LA+I ++V A G + +RGD++ + + F Sbjct: 402 EKLAQIQQLVKDAMGYDEKRGDSVNVVNSAF 432 >gi|114330758|ref|YP_746980.1| flagellar M-ring protein FliF [Nitrosomonas eutropha C91] gi|114307772|gb|ABI59015.1| flagellar M-ring protein FliF [Nitrosomonas eutropha C91] Length = 547 Score = 166 bits (421), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 121/394 (30%), Positives = 200/394 (50%), Gaps = 28/394 (7%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y LY L + I AL + N+ ++ S++ SI VP + V + R+HLA Q Sbjct: 48 LWSQTPDYRVLYANLSEQEGGAIIDALQKMNVPYQFSESSGSILVPVNQVHEVRLHLAGQ 107 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + SG+E+ + FG + F++++ RALEGE+AR+IQS+S + ARVH+ + Sbjct: 108 GLPKGNL-SGFEILEN-QKFGSSQFLEQVNYQRALEGELARSIQSLSAVQGARVHLAIAR 165 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + +P+ SV++ R ++P + AI HLV++++P+L + +VTV+D G Sbjct: 166 PSVFTRERQQPSVSVLLNLHHGRMLSP---EQVSAIVHLVSSSIPDLTVKNVTVVDQQGN 222 Query: 216 LLTA---NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272 LL+ N+ME + L VQ ++ I L G DN + V A+++ + Sbjct: 223 LLSGQKENQMETGLDPGQLKYVQDMEQNFVRRIEAILTPVTGQDNVHAQVTADIDFSRIE 282 Query: 273 IREIVYDPDSKVERSIRLSKDAQRSET---SQPESAV--TVEQNMPHVSDRKVPLPRSLE 327 E Y P++ E S + + Q+SE+ SQP+ V + P + V E Sbjct: 283 RSEETYRPNNNPEESAAV-RSQQKSESVSISQPDGGVPGALSNRPPAPAQAPVETKEGQE 341 Query: 328 NT-------DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN-KGRLTEVLGRSADQG 379 T +KE +NYE++ ++ RLS AVVVN + R+ E G ++ Sbjct: 342 ETAQTTPTDTRKESTTNYEVDKTISHIRQSTGQINRLSAAVVVNYRTRMNEE-GNPINEP 400 Query: 380 KIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 + +I +V A G + RGDT+T+T+ F Sbjct: 401 LSGEEIEKITALVKQAIGFSEARGDTLTVTNSQF 434 >gi|238927418|ref|ZP_04659178.1| flagellar M-ring protein FliF [Selenomonas flueggei ATCC 43531] gi|238884700|gb|EEQ48338.1| flagellar M-ring protein FliF [Selenomonas flueggei ATCC 43531] Length = 526 Score = 166 bits (421), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 128/459 (27%), Positives = 224/459 (48%), Gaps = 33/459 (7%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 R R ++L S +++ ++F + ++ + P L+ +E D ++ L E+ I + I + Sbjct: 18 RQRYIMLGSALVILALIFGLSFWYGSKPDMVPLFTDMETKDAGEVANQLRESKISYEIQE 77 Query: 79 N--GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136 N G++I VP++ V +AR++LA QGLP N G+E+FD + G+T F + ++AL+ Sbjct: 78 NKSGTTILVPTANVHEARLNLAVQGLPRG--NKGFEIFDD-SKLGVTEFQNRVNYLQALQ 134 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS---VYKSAEAIRH 193 GE+ RTI+ I + ARVHIV+P+ ++K TAS+M+R + P+ K + I + Sbjct: 135 GELTRTIEQIEAVDKARVHIVLPEDSLYKKEEKPATASIMLR-LKPNTELTKKEIKGIVN 193 Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILG----KSLSIVQAIQHEIEMNINKA 248 L A +V L ++T++D TGK+L ++ + LG L + + +Q IE I Sbjct: 194 LAAHSVKGLTPENITIVDDTGKILNDPDDQDEKGLGVKTITQLDMTRKMQDSIEKKIQTL 253 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQRSETSQPESA 305 L LG + V EL+ D + + P DS + RS + ++ ++ P Sbjct: 254 LDQTLGEGRAFARVSLELDFDDRLTDRQTFTPVVDDSGIVRSQQDISESYTGSSTNPGGP 313 Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365 V+ N+P +++ + E KKE NYEIN + + R+++AV+VN Sbjct: 314 AGVQSNVPGYVEQESNANAAYE---KKESTKNYEINEERQHVIASPGSIRRMTVAVLVND 370 Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425 Q + +S L + VS+A GIN RGDTI++ + F Sbjct: 371 ---------DVTQPQQESIL----RTVSSAAGINQARGDTISVEPLPFSTEAAERRAAEL 417 Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 + D R F + A++ ++ ++ L +RL Sbjct: 418 QAEKDRQDRIFYMQVGAVLLIIALIVAAVLMYRRKKRLE 456 >gi|83859389|ref|ZP_00952910.1| flagellar M-ring protein [Oceanicaulis alexandrii HTCC2633] gi|83852836|gb|EAP90689.1| flagellar M-ring protein [Oceanicaulis alexandrii HTCC2633] Length = 551 Score = 166 bits (421), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 169/569 (29%), Positives = 274/569 (48%), Gaps = 47/569 (8%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF---VNSPHYDNLYVKLEVS 58 AIL+QL +F +GR LA+++ + A FF +NS L+ L + Sbjct: 3 AILEQLSRF-----GVGR-----LAAILGLTAGAAAALVFFTMSMNSNGQALLFSGLGPA 52 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 D +S L +A I + + + GS++ V + V +AR+ +A+ G S S GYE+FD+ + Sbjct: 53 DAAAVSQRLDQAGISYELQEGGSAVYVSTDQVDEARMRVASGGALSFGS-VGYEIFDETD 111 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178 + G TSF+Q + RALEGE+AR+I +++ + AARVH+V+P+ F + P+ASV+I Sbjct: 112 ALGTTSFVQNVNAKRALEGELARSINTLNTVSAARVHLVLPERRLFSREQQEPSASVVIS 171 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQ-A 236 IR+LVA AVP L +T+ D G+LL A ++ E ++LG L Q A Sbjct: 172 VRGELPSAQINTIRNLVATAVPGLQANRITLADDQGRLLAAPSDAEGDVLGAMLDDRQNA 231 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 I+ +++ I + +G R AV AE+N ++Q + YDPD +VE S R + + +R Sbjct: 232 IERDLQQKIRDLVEGIVGSGGVRVAVTAEINRESQTRTRLEYDPDGQVEVS-RRAIEERR 290 Query: 297 SETSQPESAVTVEQNMPHV---SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 SE V+V +N P ++ + PL + E++ + N + T SI D Sbjct: 291 SEPVN-SGGVSVSENTPDAEAGANGETPLLATSESSTTERNYQNTQEETVSIIQAGD--- 346 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS----RRGDTI-TI 408 LERL+++VVV++ + G + + + ++ L +I +V+AA G + GD I + Sbjct: 347 LERLAVSVVVDEVAVVGEDGTLSFEPRSEAELTQIRNLVAAAVGFPTDTTLTDGDQILQV 406 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 TSM F L GT + F + V V LLV L L Sbjct: 407 TSMRFNRPDL-TLGTPAPEGFSLARLDFMRIAEIAVLFVTALLVILLVARPL-------- 457 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIA--LDSSNQDIFSHSRNLQ------SRIN 520 +G VG S P + G DN+ L +S+ + + ++I Sbjct: 458 -VQGAVGNVSAARPALAGAGSGGGKALPDNVQALLGNSDGTVMLPEGDPSDDHIDVAQIE 516 Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKW 549 V K S ++ ++E + + ILR W Sbjct: 517 GQVKKSSVRKVAALVEQHPDESMSILRTW 545 >gi|161485650|ref|NP_419721.2| flagellar MS-ring protein [Caulobacter crescentus CB15] gi|221233887|ref|YP_002516323.1| flagellar MS-ring protein [Caulobacter crescentus NA1000] gi|220963059|gb|ACL94415.1| flagellar M-ring protein FliF [Caulobacter crescentus NA1000] Length = 554 Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 140/531 (26%), Positives = 255/531 (48%), Gaps = 38/531 (7%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 F+ + LY L++ + + ++ AL +A I + +GS+I VP V AR+ +A + Sbjct: 35 MFMGKEPSELLYSNLDLKEASEVTQALDQAGIKYETKGDGSTIMVPRDKVASARLMVAGK 94 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GL SS S GYE+FD N+ G T F+Q++ R RAL+GE+ RTI+++ G+ + RVH+V+P Sbjct: 95 GLVSSGS-IGYEIFDTNNALGQTDFVQQLNRQRALQGELERTIKAMQGVNSVRVHLVLPK 153 Query: 161 MGSFRKIGARPTASVMI--RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + +P+A+V I + PS AI++LV+++VPN+ V V+D GK L+ Sbjct: 154 RQLFEEDAEQPSAAVTIGVGSREPS-SDMVRAIQNLVSSSVPNMKAEKVAVIDQHGKTLS 212 Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKA----LAAFLGVDNFRSAVVAELNMDTQQIR 274 A E ++ GK + Q + E+E I K + LG R V AEL+++ + Sbjct: 213 APSDE-SLAGK---MAQDRKSEVEARIAKTVKDMIEGVLGPGKARVNVTAELDLNRVTTQ 268 Query: 275 EIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEE 334 E +DPD +V RS ++ + + + + VT N+P + T + + Sbjct: 269 EERFDPDGQVIRSESTTEASSQENKNDDNAGVTAAANVPGGQGANG-FQQLGSRTGQNDA 327 Query: 335 QSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY-------LAE 387 +NYEI+ T + ++++++AV ++ V A GK +Y + + Sbjct: 328 VTNYEISKSVTTTVQEPGTIKKIAVAVAIDG-----VSAPMAADGKPGAYTPRTAQEIQQ 382 Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447 I ++V A G ++ RGD + +T++ F + + + G + + ++ ++ A V Sbjct: 383 IEELVKTAVGFDAERGDQVRVTNIKFPQPE--DQGLEEQGLLAGFDKN--DIMRAAELGV 438 Query: 448 GTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQ 506 ++ + L A+R + N+ G++ PP++ VT + +D S + Sbjct: 439 LAVVALLILLFAVRPFIKNLSAPAPGQIALAGPSGGPPVTRLVTLADGTQQQVVVDQSGE 498 Query: 507 DIFSHSRNLQ--------SRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549 I + ++I V S R+ +E + + ILR W Sbjct: 499 PIALAGPPVSDIDQRIDIAKIEGQVKASSIKRVSEFVEKHPDESVAILRNW 549 >gi|316935488|ref|YP_004110470.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris DX-1] gi|315603202|gb|ADU45737.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris DX-1] Length = 537 Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 152/555 (27%), Positives = 255/555 (45%), Gaps = 33/555 (5%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + LL F K G R +I +V LV F+ R V+ P LY L V D + I Sbjct: 1 MQNLLSFLK-GLGAARLMAMIAVTVALVGFFAFVIMR--VSQPQMTTLYTDLSVEDSSSI 57 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L I F + + G+ + VP V + R+ LA +G GYE+FDK ++ G T Sbjct: 58 IKELERQGIPFEMRNEGAILLVPKDKVTRLRMKLA-EGGLPKGGGVGYEIFDKSDALGTT 116 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 SF+Q I +RALEGE++RTI++I + AARVH+V+P F + P+AS+++R Sbjct: 117 SFVQNINHLRALEGELSRTIRAIDRVQAARVHLVLPARPLFSREAPEPSASIVLRVRGAL 176 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-----TANEMERNILGKSLSIVQAIQ 238 + AIRHLVA+AV L V+++D G+LL + +ME + + A + Sbjct: 177 EPQQVRAIRHLVASAVNGLKPQRVSIVDEAGQLLADGSASGEQMEGATSDERRA---AFE 233 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 + I +++ +G R V A+ + + +DP+ +V RS + +++ + Sbjct: 234 KRMRHQIEGIVSSVVGSGRARVQVSADFDYNKITQTSDTFDPEGRVLRSSQTREES--AA 291 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 TS + VTV +P + + R + + K EE +NYEI+ + + ++ RLS Sbjct: 292 TSAADGQVTVNNELPGANQGQGAGARDV--SKKSEETNNYEISRVTKTEVTEAGRVNRLS 349 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 +AV+V+ + G + L I +V +A G + +RGD I + ++ F E Sbjct: 350 VAVLVDGAYTKDDKGELVYAERSKEQLDRIAALVRSAIGFDQKRGDQIEVVNLKFAEAPQ 409 Query: 419 FNSGTVQVSFMDILSRHFATVIN----ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 M + ++N ++FL+G L+V F+ + L + + + E Sbjct: 410 IEKLPEPAGLMGMFQFTKDDIMNMIQLGVMFLLG-LVVLFMVIRPLVK-RVLAAEQTPEA 467 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 G A+ G +P I +D S +++ V QS R+ + Sbjct: 468 AGL---------PALADGTVP--QIGVDGQPVAPGMPSMIDIAQVQGQVHAQSVHRVGEL 516 Query: 535 IEINEERFAKILRKW 549 E N A I+R+W Sbjct: 517 AERNPNETAAIVRQW 531 >gi|86748397|ref|YP_484893.1| flagellar MS-ring protein [Rhodopseudomonas palustris HaA2] gi|86571425|gb|ABD05982.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris HaA2] Length = 532 Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 150/557 (26%), Positives = 256/557 (45%), Gaps = 41/557 (7%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + LL F K LG R++ + +V + + F V+ P LY L V D + I Sbjct: 1 MQSLLGFLKG---LGAARVMAMIAVTMALLGFFAFVIMRVSQPQMTTLYTDLSVEDSSSI 57 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L I F + ++G+ + VP V + R+ LA +G GYE+FDK ++ G T Sbjct: 58 IKELERQAIPFEMRNDGAILMVPKDKVTRLRMKLA-EGGLPKGGGVGYEIFDKSDALGTT 116 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 SF+Q I +RALEGE++RTI++I + AARVH+V+P+ F + P+AS+++R Sbjct: 117 SFVQNINHLRALEGELSRTIRAIDRVQAARVHLVLPERPLFSRETPEPSASIVLRVRGAL 176 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEM 243 + AIRHLVA+AV L V+++D G+LL N + + E M Sbjct: 177 EPQQVRAIRHLVASAVNGLKPQRVSIVDEGGQLLADGSASANAADGAAGDERRTSFEKRM 236 Query: 244 --NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 I +++ +G R V A+ + + +DP+ +V RS + ++ +++TS Sbjct: 237 RNEIEGIVSSVVGSGRARVQVTADFDYNKITQTSDKFDPEGRVLRSSQTREE--QAQTSA 294 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKK-EEQSNYEINTKSIATTHDNYKLERLSIA 360 + VTV +P + P + KK EE +NYEI+ + + ++ RLS+A Sbjct: 295 ADGQVTVNNELP---GNQAPGGAGARDQSKKSEETNNYEISRVTKTEVTEAGRVNRLSVA 351 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 V+V+ + G + L I +V +A G + +RGD I + ++ F E Sbjct: 352 VLVDGSYTKDEKGELVYAERPKEQLDRIAALVRSAIGFDQKRGDQIEVVNLRFAEAPQVE 411 Query: 421 S--------GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 G +Q + DI++ +I V V L+V F+ + L Sbjct: 412 KLPEPAGLLGMLQFTKDDIMN-----MIQLGVMFVLGLVVLFMVIRPLV----------- 455 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 K +L+ P S A + + ++ S+ + ++ +++ V QS R+ Sbjct: 456 ----KRVLASDPASEASGLPALADGSLPQIGSDGQAGTSMIDI-AQVQGQVHAQSVHRVG 510 Query: 533 HMIEINEERFAKILRKW 549 + E N A I+R+W Sbjct: 511 ELAERNPNETAAIVRQW 527 >gi|114319870|ref|YP_741553.1| flagellar M-ring protein FliF [Alkalilimnicola ehrlichii MLHE-1] gi|114226264|gb|ABI56063.1| flagellar M-ring protein FliF [Alkalilimnicola ehrlichii MLHE-1] Length = 580 Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 132/437 (30%), Positives = 218/437 (49%), Gaps = 44/437 (10%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 +DQL F ++ R L LA V+L + + + P Y L+ +L+ D + Sbjct: 38 MDQLEGLFGGRQNVMR---LGLAVVLLFTVAAGVLLYLWAQEPSYRTLFSELDDQDAAAV 94 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L E I +R+ + ++ VPS V AR+ LAA+GLP + G+E+ + ++FG + Sbjct: 95 IEQLEEQGIPYRLDERTGAVRVPSDQVHPARLQLAAEGLPRGT-GFGFEMLQEDSAFGTS 153 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----R 178 FM+ RALE E+AR+I ++ + AARVH+ +P F + +P ASV++ R Sbjct: 154 EFMEGARFDRALETELARSIGTLRQVDAARVHLALPRESVFVRDRRQPRASVVVNLAQGR 213 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL-SIVQAI 237 +N + +AI H+VA++VP+L +V+V+D G+LLT +E G+ L S Sbjct: 214 RLN---DEQVDAIVHMVASSVPDLAHENVSVVDERGRLLTRDE------GRGLASTAGQF 264 Query: 238 QHEIEMN------INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 Q++ ++ I LA +G + R+ V A L+ QQ E +YDPDS+V RS L Sbjct: 265 QYKTQVEETYVRRIEDLLAPLVGRNRVRAQVNASLDFSEQQRTEELYDPDSRVIRSEAL- 323 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKE----------EQSNYEIN 341 Q T Q A +P + P L+ + E E NYEI Sbjct: 324 ---QGRRTQQGADAAM---GVPGALTNQPPGAGQLDGEEAPENPPPVDISSSETRNYEI- 376 Query: 342 TKSIATTHDNY-KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400 ++++ D ++R+S+AVVV++ T+ G + + D + IN +V A G ++ Sbjct: 377 SRTLRQVRDPIGSIQRVSVAVVVDERITTDEEGNTVREPLSDEEMDRINALVQEAVGFDA 436 Query: 401 RRGDTITITSMDFLENQ 417 RGD++ + + FLE + Sbjct: 437 ARGDSVNVVNAAFLEEE 453 >gi|304438472|ref|ZP_07398412.1| flagellar M-ring protein FliF [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368555|gb|EFM22240.1| flagellar M-ring protein FliF [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 526 Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 125/459 (27%), Positives = 225/459 (49%), Gaps = 33/459 (7%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 R R ++L S + + +++F + ++ + P L+ +E D ++ L E+ I + I + Sbjct: 18 RQRYIMLGSALAILVLVFGLSFWYGSKPDMVPLFTDMETKDAGEVANQLRESKISYEIQE 77 Query: 79 N--GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136 N G++I VP++ V +AR++LA QGLP N G+E+FD + G+T F + ++AL+ Sbjct: 78 NKSGTTILVPTANVHEARLNLAVQGLPHG--NKGFEIFDD-SKLGVTEFQNRVNYLQALQ 134 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS---VYKSAEAIRH 193 GE+ RTI+ I + ARVHIV+P+ ++K TAS+M+R + P K + I + Sbjct: 135 GELTRTIEQIEAVDKARVHIVLPEDSLYKKEEKPATASIMLR-LKPHAELTKKEIKGIVN 193 Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKS---LSIVQAIQHEIEMNINKA 248 L A ++ L ++T++D TGK+L ++ E+ + K+ L + + +Q IE + Sbjct: 194 LAAHSIKGLTPENITIVDDTGKILNDPDDQDEKGLGAKTITQLEMTRKVQDNIEKKVQTL 253 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQRSETSQPESA 305 L LG + V EL+ D + + P D+ + RS + ++ ++ P Sbjct: 254 LDQTLGEGRAFARVSVELDFDDRLTDRQTFTPVVDDAGIIRSQQDISESYNGSSTNPGGP 313 Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365 V+ N+P +++ + E KKE NYEIN + + R+++AV+VN Sbjct: 314 AGVQSNVPGYVEQESNANAAYE---KKESTKNYEINEERQHVIASPGSIRRMTVAVLVND 370 Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425 Q + +S L + VS+A GIN RGDTI++ + F Sbjct: 371 ---------DVTQPQQESIL----RTVSSAAGINQTRGDTISVEPLPFSTEAADRRAAEL 417 Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 + D R F + A++ ++ ++ L +RL Sbjct: 418 QAEKDRQDRIFYMQVGAVLLIIALIVAAILMYRRKKRLE 456 >gi|300693364|ref|YP_003749337.1| flif: flagellar biosynthesis protein, m-ring protein, belongs to the flif family [Ralstonia solanacearum PSI07] gi|299075401|emb|CBJ34696.1| FliF: Flagellar biosynthesis protein, M-ring protein, Belongs to the fliF family [Ralstonia solanacearum PSI07] Length = 611 Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 141/482 (29%), Positives = 234/482 (48%), Gaps = 76/482 (15%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P+Y LY + SD I AL + N+ +R +D GS+I VP + V +AR+ LAAQ Sbjct: 66 LWSRTPNYGVLYSNVADSDGGAIIAALQQMNVPYRFADGGSAIMVPEANVHEARLKLAAQ 125 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP +G+EL + FG + F +++ RALEGE+ARTIQ++ + +ARVH+ + Sbjct: 126 GLPKGGL-AGFELMEN-QKFGTSQFAEQVNYQRALEGELARTIQAMQEVQSARVHLALSK 183 Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + A+P+ASV+++ + P +AI HLV+++VPNL + +VTV+D +G+LL Sbjct: 184 PSVFVREQAKPSASVLLK-LYPGRMLDRSQVQAIGHLVSSSVPNLPLANVTVVDQSGRLL 242 Query: 218 TANEMERNILG---KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQI 273 +++ + N G L+ V+ I+ I L LG DN R+ V A++++D T+Q+ Sbjct: 243 SSS-FQDNASGLDPTQLNYVRDIEQGYIKRIEAILGPVLGEDNVRAQVTADVDLDNTEQM 301 Query: 274 REIV---YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE--- 327 E DP + V RS S+ Q +Q N P + R +P + Sbjct: 302 AETYRPNQDPSNGVVRSTHTSESTQNKAGAQ-GGVPGALSNQPPSAPRMLPTAPAPASQQ 360 Query: 328 -----------------------------NTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 + ++ NYE++ T + RLS Sbjct: 361 AAAGQNGQNGQNGQQQAAAATGQTAANGVESSARDTTINYEVDKTVRRTRAAVGTVRRLS 420 Query: 359 IAVVVN---KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 +AVVVN G+ + L D+ + ++N +V A G +++RGD++ + + F Sbjct: 421 VAVVVNYRADGKAWKPLS--------DAEMVKLNALVKDAVGYDAKRGDSVNVVNSQF-- 470 Query: 416 NQLFNSGTVQVSFMDI-LSR-----HFATVINALVF---LVGTLLVTFLGLHALRRLHNI 466 SGT+ V+ D+ L + H+A I A + +G L++ F + L R N Sbjct: 471 -----SGTLPVAKDDLPLWKQPEMIHYA--IQAAKYGALAIGFLILVFAVIRPLIRSMNK 523 Query: 467 DD 468 D Sbjct: 524 KD 525 >gi|311279120|ref|YP_003941351.1| flagellar M-ring protein FliF [Enterobacter cloacae SCF1] gi|308748315|gb|ADO48067.1| flagellar M-ring protein FliF [Enterobacter cloacae SCF1] Length = 556 Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 122/401 (30%), Positives = 199/401 (49%), Gaps = 41/401 (10%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + SP Y L+ L D I L + NI +R +D+G +I VP+ V + R+ LA QG Sbjct: 45 WAKSPDYRTLFSNLSDQDGGAIVTQLQQMNIPYRFADSGGAIEVPADKVHELRLRLAQQG 104 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + ARVH+ MP Sbjct: 105 LPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKGARVHLAMPKP 162 Query: 162 GSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 F + P+ASV + RA++ A+ HLV++AV L G+VT++D G L Sbjct: 163 SLFVREQKLPSASVTLNLEPGRALDEG---QIAAVVHLVSSAVAGLPPGNVTLVDQAGHL 219 Query: 217 LT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LT +N R++ L ++ I+ I L+ +G N + V A+LN D ++ E Sbjct: 220 LTQSNTGARDLNDAQLKYASDVEGRIQRRIETILSPIVGNGNVHAQVTAQLNFDNKEQTE 279 Query: 276 IVYDPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMP-HVSDRKVPLPRSLENTDK 331 Y P+ +++ S+ SE + P N P + + P + +N + Sbjct: 280 EQYRPNGDSSQAVLRSRQVNESEQIGSPYPGGVPGALSNSPAPAPNAPISTPPANQNNGQ 339 Query: 332 KE----------------EQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGRLTE--VL 372 ++ E SNYE++ ++I T N ++RLS+AVVVN L + L Sbjct: 340 QQTTSTTNASGPRNTSRNETSNYEVD-RTIRHTKTNIGDVQRLSVAVVVNYKNLPDGKPL 398 Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 +ADQ + +I + A G + +RGDT+ + + F Sbjct: 399 PLTADQ------MKQIEDLTREAMGYSDKRGDTLNVVNSQF 433 >gi|163783983|ref|ZP_02178948.1| Flagellar M-ring protein [Hydrogenivirga sp. 128-5-R1-1] gi|159880743|gb|EDP74282.1| Flagellar M-ring protein [Hydrogenivirga sp. 128-5-R1-1] Length = 522 Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 119/393 (30%), Positives = 208/393 (52%), Gaps = 32/393 (8%) Query: 41 FFVNS----PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIH 96 FF+ S +Y LY L D ++ L E I +++ NGS I VP V R+ Sbjct: 39 FFIYSLSSKENYAVLYTNLSPEDAGQVLTVLQEEKIPYKVEGNGSIILVPKDKVYDVRLK 98 Query: 97 LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHI 156 LA++G+PS S+ G+E+FD+ G+T F + I +RALEGE+ RTI+ ++ ++ A+V+I Sbjct: 99 LASKGIPSGST-VGFEIFDE-PKMGITQFQENINYIRALEGELERTIRQLNAVIDAKVNI 156 Query: 157 VMPDMGSFRKIGARPTASVMIRAINPS---VYKSAEAIRHLVAAAVPNLDMGDVTVLDST 213 MP F + +P ASV+I+ + P + +AI LV+ AVP L +VTV D+ Sbjct: 157 AMPKESIFAREEDQPKASVLIK-LAPGKDLTPEQVKAIVFLVSRAVPKLKPENVTVADNR 215 Query: 214 GKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ 271 G++L+ E E K+L + + ++ +IE N+ L+ LG D + V A + ++T Sbjct: 216 GRVLSDVLEETETAKADKTLQLKRKLERQIERNVQSMLSKALGSD--KVVVRATVEVETG 273 Query: 272 QI--REIVYDPDSKV---ERSIRLS-KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRS 325 Q+ ++ +YDPD ER I+ K Q+SE P ++ V M D R Sbjct: 274 QLHQKDELYDPDKVAIVSERRIKEEVKTKQKSEIGPPGTSTNVPPIMDTGQD------RY 327 Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQG-----K 380 L K++ NY+++ I + +K++++S+ V+++ G+ E+ ++ + + Sbjct: 328 LVEKKKEDRTRNYDVSKSIINKSQPIFKIKKVSVGVLID-GKYQEIKDKNGNVSYKFIPR 386 Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 L + +++ +A G + +RGD +TI S+ F Sbjct: 387 SKEELKQYEELIKSAIGFDPKRGDKVTIVSVPF 419 >gi|91978309|ref|YP_570968.1| flagellar MS-ring protein [Rhodopseudomonas palustris BisB5] gi|91684765|gb|ABE41067.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris BisB5] Length = 532 Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 125/414 (30%), Positives = 203/414 (49%), Gaps = 10/414 (2%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + LL F K LG R++ + +V + + F V+ P LY L V D + I Sbjct: 1 MQSLLGFLKG---LGAARVMAMIAVTVALLGFFAFVIMRVSQPQMTTLYTDLSVEDSSSI 57 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L I F + + G+++ VP V + R+ LA +G GYE+FDK ++ G T Sbjct: 58 IKELERQAIPFEMRNEGTTLMVPKDKVTRLRMKLA-EGGLPKGGGVGYEIFDKSDALGTT 116 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 SF+Q I +RALEGE+ARTI++I I ARVH+V+P+ F + P+AS+++R Sbjct: 117 SFVQNINHLRALEGELARTIRAIDRIQQARVHLVLPERPLFSRETPEPSASIVLRVRGAL 176 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEM 243 + AIRHLVA+AV L V+++D G+LL N + + E M Sbjct: 177 EPQQVRAIRHLVASAVNGLKPQRVSIVDEGGQLLADGSASANAADGAAGDERRTSFEKRM 236 Query: 244 --NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 I +++ +G R V A+ + + +DP+ +V RS + ++ +S+TS Sbjct: 237 RNEIEGIVSSVVGSGRARVQVTADFDYNKITQTSDKFDPEGRVLRSSQTREE--QSQTSA 294 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 + VTV +P + PR + + K EE +NYEI+ + + ++ RLS+AV Sbjct: 295 ADGQVTVNNELPGNQGQAGTGPR--DQSKKSEETNNYEISRITKTEVTEAGRVNRLSVAV 352 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 +V+ G + L I +V +A G + +RGD I + ++ F E Sbjct: 353 LVDGIYTKNEKGELVYAERPKEQLDRIAALVRSAIGFDQKRGDQIEVVNLKFAE 406 >gi|462109|sp|Q04954|FLIF_CAUCR RecName: Full=Flagellar M-ring protein gi|144247|gb|AAA66325.1| flagellar M-ring protein [Caulobacter crescentus CB15] gi|13422171|gb|AAK22889.1| flagellar M-ring protein [Caulobacter crescentus CB15] Length = 536 Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 140/531 (26%), Positives = 255/531 (48%), Gaps = 38/531 (7%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 F+ + LY L++ + + ++ AL +A I + +GS+I VP V AR+ +A + Sbjct: 17 MFMGKEPSELLYSNLDLKEASEVTQALDQAGIKYETKGDGSTIMVPRDKVASARLMVAGK 76 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GL SS S GYE+FD N+ G T F+Q++ R RAL+GE+ RTI+++ G+ + RVH+V+P Sbjct: 77 GLVSSGS-IGYEIFDTNNALGQTDFVQQLNRQRALQGELERTIKAMQGVNSVRVHLVLPK 135 Query: 161 MGSFRKIGARPTASVMI--RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + +P+A+V I + PS AI++LV+++VPN+ V V+D GK L+ Sbjct: 136 RQLFEEDAEQPSAAVTIGVGSREPS-SDMVRAIQNLVSSSVPNMKAEKVAVIDQHGKTLS 194 Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKA----LAAFLGVDNFRSAVVAELNMDTQQIR 274 A E ++ GK + Q + E+E I K + LG R V AEL+++ + Sbjct: 195 APSDE-SLAGK---MAQDRKSEVEARIAKTVKDMIEGVLGPGKARVNVTAELDLNRVTTQ 250 Query: 275 EIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEE 334 E +DPD +V RS ++ + + + + VT N+P + T + + Sbjct: 251 EERFDPDGQVIRSESTTEASSQENKNDDNAGVTAAANVPGGQGANG-FQQLGSRTGQNDA 309 Query: 335 QSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY-------LAE 387 +NYEI+ T + ++++++AV ++ V A GK +Y + + Sbjct: 310 VTNYEISKSVTTTVQEPGTIKKIAVAVAIDG-----VSAPMAADGKPGAYTPRTAQEIQQ 364 Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447 I ++V A G ++ RGD + +T++ F + + + G + + ++ ++ A V Sbjct: 365 IEELVKTAVGFDAERGDQVRVTNIKFPQPE--DQGLEEQGLLAGFDKN--DIMRAAELGV 420 Query: 448 GTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQ 506 ++ + L A+R + N+ G++ PP++ VT + +D S + Sbjct: 421 LAVVALLILLFAVRPFIKNLSAPAPGQIALAGPSGGPPVTRLVTLADGTQQQVVVDQSGE 480 Query: 507 DIFSHSRNLQ--------SRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549 I + ++I V S R+ +E + + ILR W Sbjct: 481 PIALAGPPVSDIDQRIDIAKIEGQVKASSIKRVSEFVEKHPDESVAILRNW 531 >gi|327394264|dbj|BAK11686.1| flagellar M-ring protein FliF [Pantoea ananatis AJ13355] Length = 572 Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 132/467 (28%), Positives = 216/467 (46%), Gaps = 63/467 (13%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P+Y L+ L D I L++ N+ +R +DNG ++ VP V + R+ LA Q Sbjct: 47 LWAKTPNYSVLFSNLSNEDGGAIVTQLTQMNVPYRFADNGGALMVPEDKVHELRLRLAEQ 106 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP N G+EL DK FG++ F +++ RALEGE+ARTI+S+ + ARVH+ MP Sbjct: 107 GLPKGG-NVGFELLDK-EKFGISQFSEQVNYQRALEGELARTIESLGPVKTARVHLAMPK 164 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + P+ASV + RA++ +AI H+V+++V L G+VTV+D +G Sbjct: 165 PTLFVREQKAPSASVTLTLQPGRALDEG---QIQAITHMVSSSVAGLPPGNVTVVDQSGH 221 Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT ++ + R++ L ++ + I L LG N + V A++N DT + Sbjct: 222 LLTRSDAVGRDLNDAQLKYAAEVEARYQQRIEAILNPILGQGNVHAQVTAQINFDTSEQT 281 Query: 275 EIVYDPDSKVERSIRLSKDAQRSETS--------------QPESAVTVEQNMPHVSDR-- 318 + Y P+ + + S+ SE S QP A T N P+ + Sbjct: 282 DEKYQPNGDPKNASIRSQQTSTSEQSGSPYPGGVPGALSNQPAPANTAPVNAPNTNAANG 341 Query: 319 ---------------KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 S+ ++++ NYE++ T + ++RLS+AVVV Sbjct: 342 QNANGQNNAANGQRTSTASASSVPTNSRRDDTVNYELDRTIRHTKMNVGDVQRLSVAVVV 401 Query: 364 NKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 N R D+GK + L +I + A G + +RGD++ + N F Sbjct: 402 NY--------REDDKGKALALNEQQLKQIEDLTREAMGYSQQRGDSVNVV------NSQF 447 Query: 420 NSGTVQVSFMDILSRH--FATVINALVFLVGTLLVTFLGLHALRRLH 464 N+ VS + + F +I+A +L+ LV F+ R H Sbjct: 448 NTTEPTVSELPFWQQQSFFDQLISAGKWLL-VALVAFILYRKTVRPH 493 >gi|259907606|ref|YP_002647962.1| Flagellar basal-body M-ring protein [Erwinia pyrifoliae Ep1/96] gi|224963228|emb|CAX54712.1| Flagellar basal-body M-ring protein [Erwinia pyrifoliae Ep1/96] gi|283477448|emb|CAY73364.1| Flagellar M-ring protein FliF [Erwinia pyrifoliae DSM 12163] Length = 561 Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 127/452 (28%), Positives = 217/452 (48%), Gaps = 46/452 (10%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 F+ P Y L+ + D I LS+ N+ +RI G +I VP + V + R+ +A Q Sbjct: 47 FWAKEPGYRVLFNNVSDEDGGAIVSQLSQMNVPYRIDTPGGAIMVPEAQVHEVRMKMAQQ 106 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S G+EL D+ FG++ F +++ RALEGE+ARTI+++ I ARVH+ +P Sbjct: 107 GLPKGGS-VGFELLDQ-EKFGISQFSEQVNFQRALEGELARTIENLGPIQHARVHLAVPK 164 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + +PTASV + + AI HL+++AV L +VT++D G LLT Sbjct: 165 PSMFVRDQKQPTASVNVTLAQGRTLDDGQVTAITHLISSAVSGLPAANVTLVDQRGNLLT 224 Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 + + + I+ + + I + LA +G N R+ V A+L+ Q+ + Y Sbjct: 225 QSGTGA-LQSSQVKYTNEIEADYQQRIQRLLAPLVGDSNVRTQVTAQLDFTQQERTDEQY 283 Query: 279 DPDSKVER-SIRLSKDAQRSE-------------TSQPESAVTVEQNMP---------HV 315 P+++ E+ +IR + +Q ++ ++QP + T P + Sbjct: 284 QPNAEREKMAIRSRQSSQAAQGNGRGAGGVPGALSNQPPTPATAPLTKPLNAPAANGKNA 343 Query: 316 SDRKVPLPRSLEN--TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373 ++ K P + ++ +E +NYE++ I T ++RLS+AVV+N G Sbjct: 344 NNEKTPAAGEVAQPYNNRNDETTNYELDRTLIHTKTSVGHIQRLSVAVVINH----MAQG 399 Query: 374 RSADQGKIDSY-LAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDIL 432 G + + LA IN +V A G + +RGD+I I + F +G + + Sbjct: 400 AEGKPGPLPAAELARINTLVKEAIGYSEQRGDSINIVNSPF-------NGVAEEVMPPLW 452 Query: 433 SRH-FATVINALVFLVGTLLVTFLGLHALRRL 463 +H F T+ ++ L L++ +G RRL Sbjct: 453 QQHSFQTL---MMTLARYLVIAIIGWVMWRRL 481 >gi|30250023|ref|NP_842093.1| fliF; flagellar M-ring transmembrane protein [Nitrosomonas europaea ATCC 19718] gi|30139130|emb|CAD85994.1| fliF; flagellar M-ring transmembrane protein [Nitrosomonas europaea ATCC 19718] Length = 548 Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 113/390 (28%), Positives = 197/390 (50%), Gaps = 20/390 (5%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + SP Y LY L + I AL + N+ ++ S++G SI +P+S V + R+ LA Q Sbjct: 48 LWSQSPDYRVLYASLSDQEGGAIIEALQKMNVPYQFSESGGSILIPASQVHEVRLRLAGQ 107 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + SG+E+ + FG + F++++ RALEGE++R+IQS+S + ARVH+ + Sbjct: 108 GLPKGNL-SGFEILEN-QKFGSSQFLEQVNYQRALEGELSRSIQSLSAVQGARVHLAIAK 165 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + +P SV++ ++P S E AI HL+++++P++ + +VTV+D G LL Sbjct: 166 PSVFTRERPQPRVSVLLN-LHPGRMLSTEQVSAIVHLISSSIPDMPVKNVTVVDQQGNLL 224 Query: 218 TA---NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 + N+ E + L VQ ++ I L G DN + V A+++ + Sbjct: 225 SGQKDNQAETGLDPGQLKYVQDMEQNFVRRIEAILTPITGEDNVHAQVTADVDFSRIERA 284 Query: 275 EIVYDPDSKVER--SIRLSKDAQRSETSQPESAV--TVEQNMPHVSDRKVPLPRSLENTD 330 E +Y P++ ++R + ++ SQPE V + P ++ + +S E Sbjct: 285 EEIYKPNNNPAEAAAVRSQQQSESVSISQPEGGVPGALSNRPPAPAEAPIEAKQSSEAAA 344 Query: 331 K-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS 383 K +E +NYE++ T ++ RLS AVV+N + G A++ Sbjct: 345 KTTPTDTRRESTTNYEVDKTISHTRQATGRINRLSAAVVINYRTKLDTEGNPANEPLSGE 404 Query: 384 YLAEINKIVSAATGINSRRGDTITITSMDF 413 + +I +V G + RGDT+T+T+ F Sbjct: 405 EIEKITALVKQTIGFDETRGDTLTVTNSQF 434 >gi|254239470|ref|ZP_04932792.1| Flagella M-ring outer membrane protein precursor [Pseudomonas aeruginosa 2192] gi|126192848|gb|EAZ56911.1| Flagella M-ring outer membrane protein precursor [Pseudomonas aeruginosa 2192] Length = 598 Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 137/566 (24%), Positives = 260/566 (45%), Gaps = 73/566 (12%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92 + + A + P Y LY L D NR+ AL+ A+I +++ N ++ V + +G+ Sbjct: 52 VAIGFAVVLWSQQPDYKPLYGSLNGVDANRVVEALTAADIPYKVEPNSGALLVKADDLGR 111 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 AR+ +A+ G+ + SN G+E+ DK + G + FM+ R LEGE+ART+ S++ + AA Sbjct: 112 ARMKVASAGVAPTDSNVGFEILDKEQALGTSQFMEATNYRRGLEGELARTVSSLNNVKAA 171 Query: 153 RVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDV 207 RVH+ +P F + +P+ASV++ R++ PS AI +LVA +VP LD V Sbjct: 172 RVHLAIPKSSVFVRDDRKPSASVLVELYPGRSLEPS---QVMAIVNLVATSVPELDKSQV 228 Query: 208 TVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE 265 TV+D G LL+ + E + GK + ++ + ++ L LG +++ V A+ Sbjct: 229 TVVDQKGNLLSDQQELSELTMAGKQFDFTRRMEGLLTQRVHNILQPVLGNGRYKAEVSAD 288 Query: 266 LNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPH----------- 314 ++ + +Y+PD RS + + + +R +S P+ N P Sbjct: 289 VDFSAVESTSEMYNPDQPALRSEQRNNE-ERQNSSGPQGVPGALSNQPPGPASAPQQATA 347 Query: 315 --------------------VSDRKVPLPR-SLENTDKKEEQS-NYEINTKSIATTHDNY 352 + D K P + TDK+++ + NYE++ T Sbjct: 348 SAPADYVAPGQPLKDANGQTIIDPKTGKPELAPYPTDKRDQTTRNYELDRSISYTKQQQG 407 Query: 353 KLERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 +L RLS+AVV+ ++ ++ G + Q LA ++V + G ++ RGD++++ + Sbjct: 408 RLRRLSVAVVLDDQMKVDAKTGEVSHQPWSADELARFTRLVQDSVGYDASRGDSVSVINA 467 Query: 412 DFLENQLFNSGTV----QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR-LHNI 466 F Q ++ Q F DI+ + ++G L + L LR L NI Sbjct: 468 PFAPAQAEEIDSIPFYSQPWFWDIVKQ-----------VLGVLFILVLVFGVLRPVLSNI 516 Query: 467 DDAKKGE--VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF-SHSRNLQSRINSYV 523 KG+ GG + + G + +D +++ + + S + +++N+ Sbjct: 517 TGGGKGKSLAGGGGRDGDLALGESGLEGSLADDRVSIGGPSSILLPSPTEGYDAQLNA-- 574 Query: 524 SKQSDLRLLHMIEINEERFAKILRKW 549 + +++ + R A+++++W Sbjct: 575 -------IKNLVAQDPGRVAQVVKEW 593 >gi|197104328|ref|YP_002129705.1| flagellar M-ring protein FliF [Phenylobacterium zucineum HLK1] gi|196477748|gb|ACG77276.1| flagellar M-ring protein FliF [Phenylobacterium zucineum HLK1] Length = 548 Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 138/515 (26%), Positives = 232/515 (45%), Gaps = 31/515 (6%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110 LY L++ + I+ AL +A I + + +GS+I V V R+ L+++GLP++ S G Sbjct: 44 LYSNLDLKEAGSITQALDQAGIKYEVKGDGSTILVGRDKVAATRLMLSSRGLPTAGS-VG 102 Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170 YE+FD + G T F+Q++ R RALEGE+ARTI+S+ GI +ARVH+V+P F++ + Sbjct: 103 YEIFDDAKALGQTDFVQQLNRQRALEGELARTIRSLDGITSARVHLVLPKRQLFQEEAEQ 162 Query: 171 PTASVMI----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI 226 P+ASV I RA +P + AI++L+A AVPNL VTV+D K L+ + + Sbjct: 163 PSASVNIGVGGRAPSPEQVR---AIQNLIAGAVPNLRPDRVTVVDQHAKTLSGGDT--GM 217 Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVER 286 ++ S ++ I + + +G R V AEL + +++ +DPD +V R Sbjct: 218 AAEADSRKSEVEQRIAKQVKNLIEGVVGPGKARVNVSAELELARVTVQQETFDPDGQVIR 277 Query: 287 SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346 S + + R V N+ + + ++E +NYEI+ Sbjct: 278 SESTTDENSRENQEDGAGQAGVAGNL-PGAAALGGGGLVGSQSGRQESTTNYEISKTVRT 336 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE----INKIVSAATGINSRR 402 + +++RLS+AV V+ +G G AE I ++V A G N R Sbjct: 337 EVQEPGQVKRLSVAVAVDG---VTAIGADGQPGAYTPRTAEEMQRIEQLVRTAVGFNQDR 393 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN-ALVFLVGTLLVTFLGLHALR 461 GD +++ ++ F M + ++ +VG L++ F+ L+ Sbjct: 394 GDQVSVINVRFPTPDTVGGVEAANPLMGFDKNDIMRAVEIGVMAIVGILMLIFVARPLLK 453 Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ----- 516 ++ P ++ VTT IA D + Q + + Sbjct: 454 SATGGGGGGL-----PMMMGGPQVTRVVTTADGQPMQIAADGTAQLALPGPGHTELESKI 508 Query: 517 --SRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549 +RI V S R+ +E + E ILR W Sbjct: 509 DMARIEGQVKASSVKRVAEFVEKHPEESVAILRSW 543 >gi|313673744|ref|YP_004051855.1| flagellar m-ring protein flif [Calditerrivibrio nitroreducens DSM 19672] gi|312940500|gb|ADR19692.1| flagellar M-ring protein FliF [Calditerrivibrio nitroreducens DSM 19672] Length = 554 Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 129/454 (28%), Positives = 219/454 (48%), Gaps = 35/454 (7%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++ N P Y L+ L D + L I + + D+G +I VP+ V + RI LA + Sbjct: 41 YWANKPVYKILFANLSQEDAAEVVAKLKAKKIPYNLKDSGKTIEVPAKDVYETRIELAKE 100 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 G+P G+ELFDK SFG+T F Q + RAL+GE++RTI ++ + ARVH+ +P Sbjct: 101 GIPKGGG-VGFELFDKT-SFGITEFAQNVNYQRALQGELSRTISTLEEVEEARVHLTLPK 158 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F A+V+++ +AI LV AV L + +V ++D+ G LL+ Sbjct: 159 DKLFITEDGEAKAAVVLKLKKGETLNRDKVKAIASLVVGAVKGLKIQNVQIVDTQGNLLS 218 Query: 219 ANEMERNI----LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 + E N+ L + ++ I IN LA LG +N + V AE++ D ++I Sbjct: 219 ESLNEENLPYVKTQTQLEYQKKVEKIISSKINSLLATTLGENNAVAQVTAEIDFDKKEIN 278 Query: 275 EIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNM--PHVSDRKVPLPRSLENTDKK 332 + +D + V RS + + ++ + P+ VE N+ P++ V + K Sbjct: 279 KEEFDQNP-VLRSSQTIEIESKNTPNTPQGQPGVEPNLAEPNIQQNGVNSTYT-----KN 332 Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVN---------KGRLTEVLGRSADQGKIDS 383 EE N+EI ++RL+IAVVVN K +T+ + R+ ++ Sbjct: 333 EETQNFEIGKTVTKEEKSIGSIKRLTIAVVVNDKAEIVKEGKKEVTKYVPRTKEE----- 387 Query: 384 YLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINAL 443 L +I +V+ A G + +RGD I +T++ F +Q+ S ++ M+ L + + L Sbjct: 388 -LDKIKGLVAKAAGFDEKRGDQIEVTNVSFDTSQMSESKLLEKEKMNELIIQISKYVMVL 446 Query: 444 VFLVGTLLVTFLGLHA-LRRLHNIDDAKKGEVGG 476 V LL FL + +++L +I + K GE+ Sbjct: 447 VMF---LLFYFLVIRPIMKKLGDIKETKSGELAA 477 >gi|295097226|emb|CBK86316.1| flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 511 Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 130/467 (27%), Positives = 222/467 (47%), Gaps = 37/467 (7%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 F+ P Y L+ + D I LS+ N+ +RI G +I VP V + R+ LA Q Sbjct: 2 FWAKEPGYRVLFSNISDEDGGAIVAQLSQMNVPYRIDAPGGAILVPEGQVHEVRMKLAQQ 61 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S G+EL DK FG++ F +++ RALEGE+ARTI+++ I +ARVH+ P Sbjct: 62 GLPKGGS-VGFELLDK-EKFGISQFSEQVNYQRALEGELARTIENLGPIRSARVHLATPK 119 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + +PTASV + I + AI HL+++AV L +VT++D G+LLT Sbjct: 120 QTMFVREQKQPTASVTVNLIQGRTLDEGQVIAITHLISSAVTGLTAENVTIVDQRGELLT 179 Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 + + R + L I+ + + I + LA +G N R+ V A+++ Q+ + Y Sbjct: 180 QSGL-RGLQTSQLKYTSEIESDYQQRIQRILAPLVGSKNIRAQVTAQIDFTQQEQTQEQY 238 Query: 279 DPDSKVERSIRLSKDAQRSE--------------TSQPESAVTVEQNMP------HVSDR 318 P++ ++ + S+ +SE T+QP + T P S Sbjct: 239 QPNADPQKMVIRSRQTSQSEQGNGRGNGGVPGALTNQPPAPATAPLTQPLDKPAAQTSTA 298 Query: 319 KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ 378 RS + +E +N+E++ + +++RLS+AVV+N L + G Sbjct: 299 GTGNDRSQPYNNHNDETTNFEVDRTLTHIKNAMGRIDRLSVAVVIN--HLPQ--GAEGKP 354 Query: 379 GKI-DSYLAEINKIVSAATGINSRRGDTITITSMDF--LENQLFNSGTVQVSFMDIL--- 432 G + ++ L IN +V A G + RGD++ I + F +E + Q F ++ Sbjct: 355 GPLSEAELNRINALVKEAVGYTASRGDSVNILNSPFNGVEEEELPPFWKQDKFYQLMMAI 414 Query: 433 SRHFATVINALVFLVGTLLVTFLGLH--ALRRLHNIDDAKKGEVGGK 477 +R+ I A V + ++ +LRR+ +A++ E+ + Sbjct: 415 ARYLVIAIIAWVMWRKLVHPAWIRHQETSLRRMEMEKEARQEELAAR 461 >gi|292489162|ref|YP_003532049.1| flagellar M-ring protein FliF [Erwinia amylovora CFBP1430] gi|292900280|ref|YP_003539649.1| flagellar M-ring protein [Erwinia amylovora ATCC 49946] gi|291200128|emb|CBJ47254.1| flagellar M-ring protein [Erwinia amylovora ATCC 49946] gi|291554596|emb|CBA22238.1| Flagellar M-ring protein FliF [Erwinia amylovora CFBP1430] gi|312173321|emb|CBX81576.1| Flagellar M-ring protein FliF [Erwinia amylovora ATCC BAA-2158] Length = 561 Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 135/480 (28%), Positives = 230/480 (47%), Gaps = 52/480 (10%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 SL + L+L I + +A F+ P Y L+ + D I LS+ N+ +R Sbjct: 22 SLRNSPKLLLPIAAAAAISVMIALMFWAKEPGYRVLFNNISDEDGGAIVSQLSQMNVPYR 81 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135 I G +I VP + V + R+ +A QGLP S G+EL D+ FG++ F +++ RAL Sbjct: 82 IDTAGGAIMVPEAQVHEVRMKMAQQGLPKGGS-VGFELLDQ-EKFGISQFSEQVNFQRAL 139 Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEA 190 EGE+ARTI+++ I ARVH+ +P F + +PTASV + RA++ A Sbjct: 140 EGELARTIENLGPIQHARVHLAVPKPSMFVRDQKQPTASVNVTLAQGRALDDG---QVTA 196 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALA 250 I HL+++AV L +VT++D G LLT + + + I+ + + I + LA Sbjct: 197 ITHLISSAVSGLPAANVTLVDQRGNLLTQSGTGA-LQTSQVKYTNEIEADYQQRIQRLLA 255 Query: 251 AFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVER-SIRLSKDAQRSE----------- 298 +G N R+ V A+L+ Q+ + Y P+++ E+ +IR + +Q ++ Sbjct: 256 PLVGDSNVRTQVTAQLDFTQQERTDEQYQPNAEREKMAIRSRQSSQAAQGNGRGSGGVPG 315 Query: 299 --TSQPESAVTVEQNMP---------HVSDRKVPLPRSLEN--TDKKEEQSNYEINTKSI 345 ++QP + T P + ++ K P + ++ +E +NYE++ I Sbjct: 316 ALSNQPPTPATAPLTKPLNAPAANGKNANNEKTPPAGEVAQPYNNRNDETTNYELDRTLI 375 Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY-LAEINKIVSAATGINSRRGD 404 T ++RLS+AVV+N G G + + LA IN +V A G + +RGD Sbjct: 376 HTKTSVGHIQRLSVAVVINH----MAQGAEGKTGPLPAAELARINTLVKEAIGYSEQRGD 431 Query: 405 TITITSMDFLENQLFNSGTVQVSFMDILSRH-FATVINALVFLVGTLLVTFLGLHALRRL 463 ++ I + F +G V+ + + F T+I + L L++ +G RRL Sbjct: 432 SVNIVNSPF-------NGVVEEVMPPLWQQQSFQTLI---MTLARYLVIAIIGWVMWRRL 481 >gi|115522990|ref|YP_779901.1| flagellar MS-ring protein [Rhodopseudomonas palustris BisA53] gi|115516937|gb|ABJ04921.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris BisA53] Length = 535 Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 145/555 (26%), Positives = 248/555 (44%), Gaps = 34/555 (6%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++ L+ F K LG R++ + +V I F V +P L+ L V D + I Sbjct: 1 MEGLVNFLKG---LGAARLMAMIAVTAALIGFFAFVILRVTTPQMTTLFTDLSVEDSSGI 57 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L I F I + GS I VP V + R+ LA GLP GYE+FDK + G T Sbjct: 58 IKDLERQAIPFEIRNEGSVIMVPKDKVTRLRMKLAEAGLPKGG-GVGYEIFDKSEALGST 116 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 SF+Q I +RALEGE+ARTI++I I AARVH+V+P+ F + P+AS+++R Sbjct: 117 SFVQNINHLRALEGELARTIRAIDRIQAARVHLVLPERPLFSRETPEPSASIVLRVRGAL 176 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL----TANEMERNILGKSLSIVQAIQH 239 + AIRH+VA+AV L V+++D G+LL + + G A + Sbjct: 177 EPQQVRAIRHVVASAVNGLKPQRVSIVDEAGQLLADGAAGDPSTEGVTGDERR--AAFEK 234 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 + + +++ +G R + A+ + + +DP+ +V S++ + Sbjct: 235 RMRNQVEAIVSSVVGTGRARVQLTADFDYNKITQTSDKFDPEGRV-LRSSQSREESSATL 293 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + + VTV +P R + + K EE +NYEI+ + + ++ R+S+ Sbjct: 294 NPTDGQVTVNNELPGAQGGAGAAAR--DQSKKSEETNNYEISRVTKTEVTEVGRVNRVSV 351 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL- 418 AV+V+ G Q + L I +V +A G + +RGD + I ++ F E Sbjct: 352 AVLVDGLYNKNDKGELVYQERSKEELDRIAALVRSAIGFDQKRGDQVEIVNLRFAEGPAV 411 Query: 419 --FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476 N T + + VI V ++ ++V F+ + L R Sbjct: 412 VPINEPTGILGMLKFTKDDVMYVIELGVMMLLGMVVIFMVIRPLVR-------------- 457 Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL--QSRINSYVSKQSDLRLLHM 534 IL+ P S L + +++ + Q + + ++ +++ V QS R+ + Sbjct: 458 -RILAAEPGSPTALPALT-DGTVSVGADGQPLPTPGPSMIDIAQVQGQVHAQSVHRVGEL 515 Query: 535 IEINEERFAKILRKW 549 + N A I+R+W Sbjct: 516 ADRNPNETAAIIRQW 530 >gi|192289867|ref|YP_001990472.1| flagellar MS-ring protein [Rhodopseudomonas palustris TIE-1] gi|192283616|gb|ACE99996.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris TIE-1] Length = 538 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 133/463 (28%), Positives = 223/463 (48%), Gaps = 15/463 (3%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + LL F K G R +I +V LV F+ R V+ P LY L V D + I Sbjct: 1 MQNLLGFLK-GLGAARLMAMIAVTVALVGFFAFVIMR--VSQPQMTTLYTDLSVEDSSSI 57 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L I F + ++G+ + VP V + R+ LA +G GYE+FDK ++ G T Sbjct: 58 IKELERQGIPFEMRNDGAILMVPKDKVTRLRMKLA-EGGLPKGGGVGYEIFDKSDALGTT 116 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 SF+Q I +RALEGE++RTI++I + AARVH+V+P+ F + P+AS+++R Sbjct: 117 SFVQNINHLRALEGELSRTIRAIDRVQAARVHLVLPERPLFSREAPEPSASIVLRVRGAL 176 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ--AIQHEI 241 + AIRHLVA+AV L V+++D G+LL + + S + A + + Sbjct: 177 EPQQVRAIRHLVASAVNGLKPQRVSIVDEAGQLLADGSASGEQVEGATSDERRAAFEKRM 236 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 I +++ +G R V A+ + + +DP+ +V RS + +++ + TS Sbjct: 237 RNQIEGIVSSVVGSGRARVQVSADFDYNKITQTSDKFDPEGRVLRSSQTREES--AATSA 294 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 + VTV +P + + R + + K EE +NYEI+ + + ++ RLS+AV Sbjct: 295 ADGQVTVNNELPGANQGQGAGARDV--SKKSEETNNYEISRVTKTEVTEAGRVNRLSVAV 352 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 +V+ G + L I +V +A G + +RGD I + ++ F E Sbjct: 353 LVDGAYTKNDKGELVYAERPKEQLDRIAALVRSAIGFDQKRGDQIEVVNLKFAEAPQVEK 412 Query: 422 GTVQVSFMDILSRHFATVIN----ALVFLVGTLLVTFLGLHAL 460 M + ++N ++FL+G L+V F+ + L Sbjct: 413 LPEPAGLMGMFQFTKDDIMNMIQLGVMFLLG-LVVLFMVIRPL 454 >gi|170743231|ref|YP_001771886.1| flagellar MS-ring protein [Methylobacterium sp. 4-46] gi|168197505|gb|ACA19452.1| flagellar M-ring protein FliF [Methylobacterium sp. 4-46] Length = 539 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 122/420 (29%), Positives = 209/420 (49%), Gaps = 25/420 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +LD + +F G R+ + +V LV + F V+ P LY L + D Sbjct: 4 VLDLMAKF-------GPARLAAMGAVTLVLVGFFAFVILRVSRPELGVLYADLSLQDAGA 56 Query: 63 ISVALSEANIDFRI-SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 + L I + D G +I P + + + R+ LA +GLPS+ GYELFDK ++F Sbjct: 57 VIRDLEARGIRYETRGDLGQTILAPRADLPRLRMDLAGKGLPSAG-GVGYELFDKGDAFS 115 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 T+F+Q + +RA EGE+AR+I++I + AARVH+V+P+ F + P+A+++++ Sbjct: 116 TTTFVQNVNHLRAQEGELARSIRAIGRVQAARVHLVIPEKRLFNRDRELPSAAIVLKLAG 175 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQA-I 237 A+RHLVA++V L ++++D G+LL + + +LG L QA + Sbjct: 176 DLDPGQVRAVRHLVASSVEGLKPERISIVDERGRLLADGAGRDDAQAVLG--LDERQASL 233 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + + + +A +G R V AEL+ + R +DP+S+V RS RS Sbjct: 234 EQRLRAQVEGIVAGIVGAGRARVQVAAELDPSRIESRSESFDPESRVVRS-----SQTRS 288 Query: 298 ETSQP----ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 ETS E+ V+V +P + + E ++K EE +NYEI+ + ++ + Sbjct: 289 ETSASQGPGETGVSVGNELPGARE-TAQANGTRETSNKNEETTNYEISRVTRTEVNEGGR 347 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 ++RLS+AVV++ G+ + L I +V A G + RGD + + ++ F Sbjct: 348 IKRLSVAVVIDGSYQPGPDGKPVYAPRSQEELDRITALVRTAVGYDKGRGDQVEVANLRF 407 >gi|125525107|gb|EAY73221.1| hypothetical protein OsI_01094 [Oryza sativa Indica Group] Length = 575 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 122/395 (30%), Positives = 194/395 (49%), Gaps = 30/395 (7%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSS 105 P Y L+ L D I LS N+ ++ S+ G +I VP+ V R+ LA QGLP Sbjct: 56 PDYKVLFSNLSDKDGGAIVAQLSTMNVPYKYSEGGGAILVPAERVHDVRLRLATQGLPKG 115 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 S +G+EL + N FG+T F + + R LEGE+ R+IQ++S + +ARVH+ +P+ F Sbjct: 116 SV-TGFELME-TNRFGVTQFQERLNFQRGLEGELTRSIQALSSVQSARVHLALPNQNGFF 173 Query: 166 KIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL----- 217 + +P+ASV++ ++ P + I HLVA++VP + V+VLD TGKLL Sbjct: 174 REQQKPSASVLL-SLYPGRFLDRTQLAGIVHLVASSVPEMSPSAVSVLDDTGKLLSQSPD 232 Query: 218 TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM----DTQQI 273 TA I + LS VQ I+ + I L +G +N ++ V AE++ T + Sbjct: 233 TAAGSSGAIDAQQLSYVQQIEQQYTRRILDILEPVVGKNNVKAQVTAEVDFSQSEQTSEQ 292 Query: 274 REIVYDPDSKVERSIRLSKDAQRSETSQPESAV--TVEQNMPHVSDRKV----PLPRSLE 327 PDS RS ++ + + ++ +QP + V P S + P P + Sbjct: 293 HRPNQTPDSSAVRSQQVVESSGGTQGNQPPAGVPGAASNQPPQPSTAPINGANPAPTAGN 352 Query: 328 NTD------KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK- 380 K+E +NYE++ T + ++R+S AVVVN + E G+ A Q K Sbjct: 353 GQQGQAAGSKRESITNYEVDKTVRVTRAGSGAIKRVSAAVVVNYQAIAEAAGK-APQAKA 411 Query: 381 -IDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 + ++ +V G N RGD++ I + FL Sbjct: 412 FTPEQIEQMTALVRETIGYNKDRGDSVNIMNTQFL 446 >gi|269139487|ref|YP_003296188.1| flagellar biosynthesis/type III secretory pathway lipoprotein [Edwardsiella tarda EIB202] gi|267985148|gb|ACY84977.1| flagellar biosynthesis/type III secretory pathway lipoprotein [Edwardsiella tarda EIB202] gi|304559376|gb|ADM42040.1| Flagellar M-ring protein FliF [Edwardsiella tarda FL6-60] Length = 572 Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 130/452 (28%), Positives = 225/452 (49%), Gaps = 54/452 (11%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 L+LAS + + I++ +A + +P Y LY + D I L++ NI +R ++NG++ Sbjct: 35 LLLASAVAIAIVVVLA--LWARAPDYRVLYSNISDRDGGAIVTQLTQMNIPYRFANNGAT 92 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 + VP+ V R+ LA QGLP + G+EL D+ FG++ F ++I RALEGE+ART Sbjct: 93 LMVPADKVYDTRLKLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQINYQRALEGELART 150 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAA 197 I+++ +V+ARVH+ MP F + +P+ASV + RA++ AI ++V++ Sbjct: 151 IETLGPVVSARVHLAMPKPSLFVREQKQPSASVTLTLEPGRALDDG---QINAIVYMVSS 207 Query: 198 AVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVD 256 +V L G+VTV+D G LLT + R++ L ++ ++ I L LG Sbjct: 208 SVAGLPPGNVTVVDQFGHLLTQPDGTGRDLNAAQLKFTSEVEGRLQRRIETILQPMLGSG 267 Query: 257 NFRSAVVAELNMDTQQIREIVYDPDS-KVERSIR-------------LSKDAQRSETSQP 302 N + V A+L+ +++ + Y P+ + +IR L+ + +++P Sbjct: 268 NVHAQVTAQLDFASREQTDEEYKPNQLPNQAAIRSQQISQSDQSGGQLNGGVPGALSNEP 327 Query: 303 ESAVTVEQNMPH----VSDRKVPLPR------------SLENTDKKEEQSNYEINTKSIA 346 T + P + R P P S +++E +NYE++ Sbjct: 328 APPATGNIDKPRSAQGTAGRNTPTPSRSSAISNNGRLTSRNENIRRDETTNYEVDRTIRH 387 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 T +ERLS+AVVVN T+ + Q K+D +IN +V A G + RGDT+ Sbjct: 388 TQARAGNIERLSVAVVVNYATDTKGKEIALSQEKMD----QINNLVREAMGFSQSRGDTL 443 Query: 407 TITSMDFLENQLFNSG-----TVQVSFMDILS 433 ++ + F N + ++G + SF+D+L+ Sbjct: 444 SVVNTPF--NSVEDNGGELPFWQKQSFIDLLT 473 >gi|161610775|ref|NP_946615.2| flagellar MS-ring protein [Rhodopseudomonas palustris CGA009] Length = 538 Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 133/463 (28%), Positives = 223/463 (48%), Gaps = 15/463 (3%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + LL F K G R +I +V LV F+ R V+ P LY L V D + I Sbjct: 1 MQNLLGFLK-GLGAARLMAMIAVTVALVGFFAFVIMR--VSQPQMTTLYTDLSVEDSSSI 57 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L I F + ++G+ + VP V + R+ LA +G GYE+FDK ++ G T Sbjct: 58 IKELERQGIPFEMRNDGAILLVPKDKVTRLRMKLA-EGGLPKGGGVGYEIFDKSDALGTT 116 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 SF+Q I +RALEGE++RTI++I + AARVH+V+P+ F + P+AS+++R Sbjct: 117 SFVQNINHLRALEGELSRTIRAIDRVQAARVHLVLPERPLFSREAPEPSASIVLRVRGAL 176 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ--AIQHEI 241 + AIRHLVA+AV L V+++D G+LL + + S + A + + Sbjct: 177 EPQQVRAIRHLVASAVNGLKPQRVSIVDEAGQLLADGSASGEQVEGATSDERRAAFEKRM 236 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 I +++ +G R V A+ + + +DP+ +V RS + +++ + TS Sbjct: 237 RNQIEGIVSSVVGSGRARVQVSADFDYNKITQTSDKFDPEGRVLRSSQTREES--AATSA 294 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 + VTV +P + + R + + K EE +NYEI+ + + ++ RLS+AV Sbjct: 295 ADGQVTVNNELPGANQGQGAGARDV--SKKSEETNNYEISRVTKTEVTEAGRVNRLSVAV 352 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 +V+ G + L I +V +A G + +RGD I + ++ F E Sbjct: 353 LVDGAYTKNDKGELVYAERPKEQLDRIAALVRSAIGFDQKRGDQIEVVNLKFAEAPQVEK 412 Query: 422 GTVQVSFMDILSRHFATVIN----ALVFLVGTLLVTFLGLHAL 460 M + ++N ++FL+G L+V F+ + L Sbjct: 413 LPEPAGLMGMFQFTKDDIMNMIQLGVMFLLG-LVVLFMVIRPL 454 >gi|295690740|ref|YP_003594433.1| cyclic nucleotide-binding protein [Caulobacter segnis ATCC 21756] gi|295432643|gb|ADG11815.1| cyclic nucleotide-binding protein [Caulobacter segnis ATCC 21756] Length = 532 Score = 163 bits (413), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 127/403 (31%), Positives = 207/403 (51%), Gaps = 35/403 (8%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 F+ + LY L++ + + ++ ALS+A I F +GS+I VP V AR+ +A + Sbjct: 17 MFMGKEPNELLYSNLDLKEASEVTQALSQAGIKFETKGDGSTIMVPRDKVASARLMVAGK 76 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GL SS S GYE+FD N+ G T F+Q++ R RAL+GE+ RTI+++ G+ + RVH+V+P Sbjct: 77 GLVSSGS-IGYEIFDGGNALGQTDFVQQLNRQRALQGELERTIKAMQGVNSVRVHLVLPK 135 Query: 161 MGSFRKIGARPTASVMI--RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + +P+A+V I + PS AI++LV++AVPN+ V V+D GK L+ Sbjct: 136 RQLFEEDSEQPSAAVTIGVGSREPST-DMVHAIQNLVSSAVPNMKAEKVAVIDQHGKTLS 194 Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKA----LAAFLGVDNFRSAVVAELNMDTQQIR 274 A E ++ GK Q + E E I K + LG R V AEL+++ + Sbjct: 195 APSDE-SLAGKE---AQDRKVEAEARIAKTVKDMIEGVLGPGKARVNVTAELDLNRVTTQ 250 Query: 275 EIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEE 334 E +DPD +V RS ++ + ++ S T N+P S + E Sbjct: 251 EERFDPDGQVVRSESTNESNSQENKNEDNSGATATANVPGQGAGGFQQLGSRAGAN--ES 308 Query: 335 QSNYEINTKSIATT-HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY-------LA 386 +NYEI +KS+ TT + ++++++AV ++ V GK +Y + Sbjct: 309 VTNYEI-SKSVKTTVQEPGTIKKVAVAVAIDG-----VTAPPGKDGKPGAYTPRSAQEIQ 362 Query: 387 EINKIVSAATGINSRRGDTITITSMDF-------LENQLFNSG 422 +I ++V A G ++ RGD + +T++ F LE Q SG Sbjct: 363 QIEELVKTAVGFDAARGDQVKVTNIKFPQAEDQGLEKQGLLSG 405 >gi|256830792|ref|YP_003159520.1| flagellar M-ring protein FliF [Desulfomicrobium baculatum DSM 4028] gi|256579968|gb|ACU91104.1| flagellar M-ring protein FliF [Desulfomicrobium baculatum DSM 4028] Length = 537 Score = 163 bits (413), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 122/406 (30%), Positives = 209/406 (51%), Gaps = 15/406 (3%) Query: 36 FMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARI 95 F F++N Y LY +L D + L + I ++I+D+G++I VP MV +ARI Sbjct: 38 FFVMIFWMNKVDYRVLYSQLYQDDAASVVSYLQKEKIPYQITDSGATIMVPGDMVYEARI 97 Query: 96 HLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVH 155 LA +G G+ELFD+ NS G T+F+Q I RAL+GE++RTI +S + +ARVH Sbjct: 98 KLAGEG-SLHGQGIGFELFDE-NSIGQTNFVQGINYQRALQGELSRTISELSEVESARVH 155 Query: 156 IVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDST 213 +V+P+ F + A P+A++M++ + +AI +LV+ +V + +T+ DS Sbjct: 156 LVLPNKSLFVEEQAPPSAAIMLKLKGGRSLGAQQVQAIVNLVSTSVEGMSAEHITLADSR 215 Query: 214 GKLLTANEMERNILGKS---LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDT 270 GK+L + + +I G S L ++Q +E I + L +G + V A+L+ D Sbjct: 216 GKILYEPKTDTDIAGLSSTQLEYQTSMQRSLEQRIEQLLLPIVGPGRVIARVNADLDFDR 275 Query: 271 QQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD 330 IR+ ++DP S V RS K+ + S+ S T + N +DR + + + Sbjct: 276 TTIRKEIFDPKSAVVRS--EVKNEEESKGSANVDGGTPDPNYQGENDRTA--SGTAQESV 331 Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINK 390 + +N++IN + ++RLS+AV+V+ + + G A + + +I + Sbjct: 332 RTSSTTNFDINKEEQQIIAQVGSIKRLSVAVLVDGKYIQQQDGTYAFEPLNAEQMEQIRQ 391 Query: 391 IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHF 436 + A G + RGD I ++S+ F E G Q +D+ SR+F Sbjct: 392 LSQRAVGFDDARGDAIEVSSISFGE----PVGAEQAPLLDVASRYF 433 >gi|15596298|ref|NP_249792.1| flagellar MS-ring protein [Pseudomonas aeruginosa PAO1] gi|107100552|ref|ZP_01364470.1| hypothetical protein PaerPA_01001577 [Pseudomonas aeruginosa PACS2] gi|116049030|ref|YP_792168.1| flagellar MS-ring protein [Pseudomonas aeruginosa UCBPP-PA14] gi|296390533|ref|ZP_06880008.1| flagellar MS-ring protein [Pseudomonas aeruginosa PAb1] gi|12230924|sp|Q51463|FLIF_PSEAE RecName: Full=Flagellar M-ring protein gi|9947018|gb|AAG04490.1|AE004540_10 Flagella M-ring outer membrane protein precursor [Pseudomonas aeruginosa PAO1] gi|115584251|gb|ABJ10266.1| Flagella M-ring outer membrane protein precursor [Pseudomonas aeruginosa UCBPP-PA14] Length = 598 Score = 163 bits (413), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 136/566 (24%), Positives = 260/566 (45%), Gaps = 73/566 (12%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92 + + A + P Y LY L D NR+ AL+ A+I +++ N ++ V + +G+ Sbjct: 52 VAIGFAVVLWSQQPDYKPLYGSLNGVDANRVVEALTAADIPYKVEPNSGALLVKADDLGR 111 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 AR+ +A+ G+ + +N G+E+ DK + G + FM+ R LEGE+ART+ S++ + AA Sbjct: 112 ARMKVASAGVAPTDNNVGFEILDKEQALGTSQFMEATNYRRGLEGELARTVSSLNNVKAA 171 Query: 153 RVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDV 207 RVH+ +P F + +P+ASV++ R++ PS AI +LVA +VP LD V Sbjct: 172 RVHLAIPKSSVFVRDDRKPSASVLVELYPGRSLEPS---QVMAIVNLVATSVPELDKSQV 228 Query: 208 TVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE 265 TV+D G LL+ + E + GK + ++ + ++ L LG +++ V A+ Sbjct: 229 TVVDQKGNLLSDQQELSELTMAGKQFDFTRRMEGLLTQRVHNILQPVLGNGRYKAEVSAD 288 Query: 266 LNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPH----------- 314 ++ + +Y+PD RS + + + +R +S P+ N P Sbjct: 289 VDFSAVESTSEMYNPDQPALRSEQRNNE-ERQNSSGPQGVPGALSNQPPGPASAPQQATA 347 Query: 315 --------------------VSDRKVPLPR-SLENTDKKEEQS-NYEINTKSIATTHDNY 352 + D K P + TDK+++ + NYE++ T Sbjct: 348 SAPADYVAPGQPLKDANGQTIIDPKTGKPELAPYPTDKRDQTTRNYELDRSISYTKQQQG 407 Query: 353 KLERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 +L RLS+AVV+ ++ ++ G + Q LA ++V + G ++ RGD++++ + Sbjct: 408 RLRRLSVAVVLDDQMKVDAKTGEVSHQPWSADELARFTRLVQDSVGYDASRGDSVSVINA 467 Query: 412 DFLENQLFNSGTV----QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR-LHNI 466 F Q ++ Q F DI+ + ++G L + L LR L NI Sbjct: 468 PFAPAQAEEIDSIPFYSQPWFWDIVKQ-----------VLGVLFILVLVFGVLRPVLSNI 516 Query: 467 DDAKKGE--VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF-SHSRNLQSRINSYV 523 KG+ GG + + G + +D +++ + + S + +++N+ Sbjct: 517 TGGGKGKSLAGGGGRDGDLALGESGLEGSLADDRVSIGGPSSILLPSPTEGYDAQLNA-- 574 Query: 524 SKQSDLRLLHMIEINEERFAKILRKW 549 + +++ + R A+++++W Sbjct: 575 -------IKNLVAQDPGRVAQVVKEW 593 >gi|258592505|emb|CBE68814.1| Flagellar basal body M-ring protein [NC10 bacterium 'Dutch sediment'] Length = 539 Score = 163 bits (413), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 142/530 (26%), Positives = 249/530 (46%), Gaps = 51/530 (9%) Query: 4 LDQLLQFFK---SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 + ++++ FK G L + +L + +L+M F + P L+ +L SD Sbjct: 5 ITKVVELFKQVWGGLGLTGRALTVLVGGGALTALLWMV--FSTHRPDMTTLFSQLNPSDA 62 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L + +R+ D G+ I VPS++V + R+HLA +GLP G+E+FD+ + Sbjct: 63 GAIVDELKSGKVSYRVVDGGTRILVPSAVVHEIRLHLATRGLPQGG-GVGFEIFDR-TTL 120 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 G T F+Q + RAL+GE+ARTI + + AARVH+ +P F + TASV++ + Sbjct: 121 GTTDFVQRLNYQRALQGELARTIGQLKEVTAARVHLALPQPSVFTEQEKPATASVVLN-L 179 Query: 181 NPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS--LSIVQ 235 P + E +R HLV+++V L+ +TV+D++GKL+ R G + + Sbjct: 180 RPGARLTPEQVRGIVHLVSSSVEGLNADRITVVDTSGKLIARPAEGRLGAGSTGQFEAQE 239 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 A++ E+E + L LG + V A+++ + + E +DP ++ R + + Q Sbjct: 240 AVEGELERRVRTMLEEILGPNKATVRVAAQMDFTSVERTEERFDPRGVIKSEQR-TTETQ 298 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 +S T+ P + V N+P + +S + K+ E Y+++ +L+ Sbjct: 299 QSVTASPAAVAGVASNVPDQTATPSQSGQSTAKSTKEAETVQYDVSKVLERKVFSPGELK 358 Query: 356 RLSIAVVVN----------KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 R+S+AV+V+ G E + R +D+ L +I V A G ++ RGD Sbjct: 359 RVSVAVMVDGTYKPVPDGKGGERKEYVPRKSDE------LEKIKVAVKNAVGFSAARGDE 412 Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRH--FATVINALVFLVGTLLVTFLGLHAL--- 460 + + F + + + M+ R + +++ ++ VG LLV GL L Sbjct: 413 VEVVEFPFDTSATEK----ERALMEEAERKAFWYSLVKPVLMGVGVLLVLVFGLRPLIRS 468 Query: 461 ---RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQD 507 RRL D G S+ P P +A+ TG P+ ALD ++ D Sbjct: 469 LKERRLPTFDTP-----GMLSMSQPGP--TAIETG--PDQAPALDVASDD 509 >gi|85858817|ref|YP_461019.1| flagellar M-ring protein [Syntrophus aciditrophicus SB] gi|85721908|gb|ABC76851.1| flagellar M-ring protein [Syntrophus aciditrophicus SB] Length = 509 Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 128/425 (30%), Positives = 206/425 (48%), Gaps = 45/425 (10%) Query: 4 LDQLLQFF----KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 ++ L+F+ +S L R L V + + + A +F N P Y L+ L D Sbjct: 1 MNSFLRFYENLRQSFVELPPARKWSLLFVAGMTLSVLAAMVYFANRPEYKVLFSHLSSED 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + I L E I + I+ G +I VP+ V + R+ LA GLP G+E+FD+ + Sbjct: 61 ASSILAKLQEKKISYEINSAGDTIFVPAEKVSELRLELAGSGLPQGG-GVGFEIFDQ-KT 118 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 G T F Q++ RAL+GE+ RTI+ + I ++RVHI +P F +PTASV ++ Sbjct: 119 LGATEFEQQLNYRRALQGELGRTIKGLEEIESSRVHIALPRESLFVSEEKKPTASVTLK- 177 Query: 180 INPSVYKSA---EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQA 236 + P S+ E I HLVA++V L+ GDV ++D+ G +L+ + E + G S S Sbjct: 178 LKPGRSLSSSQIEGIAHLVASSVEGLNAGDVIIVDNKGNILSKLKGESGLSGLSGS---- 233 Query: 237 IQHEIEMNINKALAA--------FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288 Q E + N+ K AA +G V A+L+ + E YDP+S V RS Sbjct: 234 -QIEFQRNLEKDTAARIQSLLENVVGQGKAVVRVAADLDFRMTEKTEESYDPESPVVRST 292 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 + K +++S T P +D+ +K +E NYEIN T Sbjct: 293 Q--KQSEKSAT-------------PGKADQST-------GQEKLDEIINYEINKTVSKTV 330 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 ++ +LSIAV+V+ + + G+ Q + + I ++V + G ++ RGD +T+ Sbjct: 331 MPVGEIRKLSIAVLVDGTYVKDKQGKEIYQPRSKKEIESIEELVRTSAGFSTARGDQVTV 390 Query: 409 TSMDF 413 T+M F Sbjct: 391 TNMPF 395 >gi|34498591|ref|NP_902806.1| flagellar M-ring protein [Chromobacterium violaceum ATCC 12472] gi|34104445|gb|AAQ60803.1| flagellar M-ring protein [Chromobacterium violaceum ATCC 12472] Length = 579 Score = 163 bits (412), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 136/464 (29%), Positives = 227/464 (48%), Gaps = 43/464 (9%) Query: 21 RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80 +IL L ++ + + + A +P Y L+ L D +++ AL + N+ +++ + G Sbjct: 32 KILFLTALAAI-FAVVVGAVLLNRTPSYKILFSNLADRDGGQVTAALQQMNVPYQLGE-G 89 Query: 81 SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140 ISVP+ V R+ LAAQGLP +S G+EL D FG++ F +++ R++EGE+A Sbjct: 90 GVISVPADKVYDVRLKLAAQGLPKASG-VGFELMDN-QKFGISQFAEQVNYQRSIEGELA 147 Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAA 198 RTI++IS + +ARVHI P F + PTASVM++ + + I HLV+++ Sbjct: 148 RTIEAISSVQSARVHIATPKQSVFVREQQSPTASVMLQLYPGRMLDGGQVAGILHLVSSS 207 Query: 199 VPNLDMGDVTVLDSTGKLLT--ANEMERNILG-KSLSIVQAIQHEIEMNINKALAAFLGV 255 VPNL + +VT++D G LL+ A E + L + L V+ I+ I L G Sbjct: 208 VPNLPLKNVTIVDQDGNLLSKQAGPDENSGLDQRQLGFVRQIEEGYVKRIEDILEPIFGR 267 Query: 256 DNFRSAVVAELNM-DTQQIREIVYDPDSKVERSIRLSKDAQRSE---------------- 298 N R+ V A ++ +T+Q E Y P+S S ++ Q SE Sbjct: 268 GNARAQVTANVDFSETEQTSE-TYRPNSSPNPSA--TRSQQISEKLVNGSANPTGVPGAL 324 Query: 299 TSQPESAVTVEQNMP--------HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 ++QP SA + +P ++S V S T +++ +NYE++ T Sbjct: 325 SNQPPSAASAPITLPPGAAPGTANLSGGSV----SASGTLQRDITTNYEVDKTIQHTKVP 380 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 ++RLS AVVVN R+ + G + +IN +V A G NS RGDT+ + + Sbjct: 381 TGVVKRLSAAVVVNYRRMPDKSGEMKPTPLTPQEVQQINNLVKEAMGYNSGRGDTLNVVN 440 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTF 454 F +N T+Q +D +S + +++ + + L + F Sbjct: 441 AAFADNA--QPVTMQERVIDYVSGNGTSLVKYGLLGIAVLYLLF 482 >gi|152984140|ref|YP_001349624.1| flagellar MS-ring protein [Pseudomonas aeruginosa PA7] gi|150959298|gb|ABR81323.1| flagellar M-ring protein FliF [Pseudomonas aeruginosa PA7] Length = 597 Score = 163 bits (412), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 132/493 (26%), Positives = 232/493 (47%), Gaps = 62/493 (12%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92 + + A + P Y LY L D NR+ AL+ A+I +++ N ++ V + +G+ Sbjct: 52 VAIGFAVVLWSQQPDYKPLYGSLNGVDANRVVEALTAADIPYKVEPNSGALLVKADDLGR 111 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 AR+ +A+ G+ + +N G+E+ DK + G + FM+ R LEGE+ART+ S++ + AA Sbjct: 112 ARMKVASAGVAPTDNNIGFEILDKEQALGTSQFMEATNYRRGLEGELARTVSSLNNVKAA 171 Query: 153 RVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDV 207 RVH+ +P F + +P+ASV++ R++ PS AI +LVA +VP LD V Sbjct: 172 RVHLAIPKSSVFVRDDRKPSASVLVELYPGRSLEPS---QVMAIVNLVATSVPELDKSQV 228 Query: 208 TVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE 265 TV+D G LL+ + E + GK + ++ + ++ L LG +++ V A+ Sbjct: 229 TVVDQKGNLLSDQQELSELTMAGKQFDFTRRMEGLLTQRVHNILQPVLGNGRYKAEVSAD 288 Query: 266 LNMDTQQIREIVYDPDSKVERS-IRLSKDAQRSE---------TSQPESAVTVEQ----- 310 ++ + +Y+PD RS R +++ Q S ++QP T Q Sbjct: 289 VDFSAVESTSEMYNPDQPALRSEQRNNEERQNSSGPQGVPGALSNQPPGPATAPQQATAG 348 Query: 311 ---------------NMPHVSDRKVPLPR-SLENTDKKEEQS-NYEINTKSIATTHDNYK 353 N + D K P + TDK+++ + NYE++ T + Sbjct: 349 APADYVAPGQPLKDANGQTIIDPKTGKPELAPYPTDKRDQTTRNYELDRSISYTKQQQGR 408 Query: 354 LERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 L RLS+AVV+ ++ ++ G + Q LA ++V + G ++ RGD++++ + Sbjct: 409 LRRLSVAVVLDDQMKVDAKTGEVSHQPWSADELARFTRLVQDSVGYDASRGDSVSVINAP 468 Query: 413 FLENQLFNSGTV----QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR-LHNID 467 F Q ++ Q F DI+ + ++G L + L LR L NI Sbjct: 469 FAPAQAEEIDSIPFYSQPWFWDIVKQ-----------VLGVLFILVLVFGVLRPVLSNIS 517 Query: 468 DAKKGEV---GGK 477 KG+ GG+ Sbjct: 518 GGGKGKALADGGR 530 >gi|326319071|ref|YP_004236743.1| flagellar M-ring protein FliF [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375907|gb|ADX48176.1| flagellar M-ring protein FliF [Acidovorax avenae subsp. avenae ATCC 19860] Length = 568 Score = 163 bits (412), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 132/443 (29%), Positives = 212/443 (47%), Gaps = 35/443 (7%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSS 105 P Y L+ L D I LS N+ ++ S+ G +I VP+ V R+ LA QGLP Sbjct: 56 PDYKVLFSNLSDKDGGAIVAQLSTMNVPYKYSEGGGAILVPAERVHDVRLRLATQGLPKG 115 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 S +G+EL + N FG+T F + + R LEGE+ R+IQ++S + +ARVH+ +P+ F Sbjct: 116 SV-TGFELME-TNRFGVTQFQERLNFQRGLEGELTRSIQALSSVQSARVHLALPNQNGFF 173 Query: 166 KIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL----- 217 + +P+ASV++ ++ P + I HLVA++VP + V+VLD TGKLL Sbjct: 174 REQQKPSASVLL-SLYPGRFLDRTQLAGIVHLVASSVPEMSPSAVSVLDDTGKLLSQSPD 232 Query: 218 TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM----DTQQI 273 TA I + LS VQ I+ + I L +G +N ++ V AE++ T + Sbjct: 233 TAAGSGSAIDAQQLSYVQQIEQQYTRRILDILEPVVGKNNVKAQVTAEVDFSQSEQTSEQ 292 Query: 274 REIVYDPDSKVERSIRLSKDAQRSETSQPESAV--TVEQNMPHVSDRKV----PLPRSLE 327 PDS RS ++ + + ++ +QP + V P S + P P + Sbjct: 293 HRPNQTPDSSAVRSQQVVESSGGTQGNQPPAGVPGAASNQPPQPSTAPINGANPAPTAGN 352 Query: 328 NTD------KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK- 380 K+E +NYE++ T + ++R+S AVVVN + E G+ A Q K Sbjct: 353 GQQGQAAGSKRESITNYEVDKTVRVTRAGSGAIKRVSAAVVVNYQAIAEAAGK-APQAKA 411 Query: 381 -IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATV 439 + ++ +V G N RGD++ I + FL + N+ V++ + Sbjct: 412 FTPEQIEQMTALVRETIGYNKDRGDSVNIMNTQFL---VDNTPAVELPLWK--QPEMIEL 466 Query: 440 INALVFLVGTLLVTFLGLHALRR 462 + +L + VG L L L L R Sbjct: 467 VRSLGWPVGMSLFAALILLGLVR 489 >gi|218892935|ref|YP_002441804.1| flagellar MS-ring protein [Pseudomonas aeruginosa LESB58] gi|218773163|emb|CAW28975.1| Flagella M-ring outer membrane protein precursor [Pseudomonas aeruginosa LESB58] Length = 598 Score = 163 bits (412), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 136/566 (24%), Positives = 260/566 (45%), Gaps = 73/566 (12%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92 + + A + P Y LY L D NR+ AL+ A+I +++ N ++ V + +G+ Sbjct: 52 VAIGFAVVLWSQQPDYKPLYGSLNGVDANRVVEALTAADIPYKVEPNSGALLVKADDLGR 111 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 AR+ +A+ G+ + +N G+E+ DK + G + FM+ R LEGE+ART+ S++ + AA Sbjct: 112 ARMKVASAGVAPTDNNVGFEILDKEQALGTSQFMEATNYRRGLEGELARTVSSLNNVKAA 171 Query: 153 RVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDV 207 RVH+ +P F + +P+ASV++ R++ PS AI +LVA +VP LD V Sbjct: 172 RVHLAIPKSSVFVRDDRKPSASVLVELYPGRSLEPS---QVMAIVNLVATSVPELDKSQV 228 Query: 208 TVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE 265 TV+D G LL+ + E + GK + ++ + ++ L LG +++ V A+ Sbjct: 229 TVVDQKGNLLSDQQELSELTMAGKQFDFTRRMEGLLTQRVHNILQPVLGNGRYKAEVSAD 288 Query: 266 LNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPH----------- 314 ++ + +Y+PD RS + + + +R +S P+ N P Sbjct: 289 VDFSAVESTSEMYNPDQPALRSEQRNNE-ERQNSSGPQGVPGALSNQPPGPASAPQQATA 347 Query: 315 --------------------VSDRKVPLPR-SLENTDKKEEQS-NYEINTKSIATTHDNY 352 + D K P + TDK+++ + NYE++ T Sbjct: 348 SAPADYVAPGQPLKDANGQTIIDPKTGKPELAPYPTDKRDQTTRNYELDRSISYTKQQQG 407 Query: 353 KLERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 +L RLS+AVV+ ++ ++ G + Q LA ++V + G ++ RGD++++ + Sbjct: 408 RLRRLSVAVVLDDQMKVDAKTGEVSHQPWSADELARFTRLVQDSVGYDASRGDSVSVINA 467 Query: 412 DFLENQLFNSGTV----QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR-LHNI 466 F Q ++ Q F DI+ + ++G L + L LR L NI Sbjct: 468 PFAPVQAEEIDSIPFYSQPWFWDIVKQ-----------VLGVLFILVLVFGVLRPVLSNI 516 Query: 467 DDAKKGE--VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF-SHSRNLQSRINSYV 523 KG+ GG + + G + +D +++ + + S + +++N+ Sbjct: 517 TGGGKGKSLAGGGGRDGDLALGESGLEGSLADDRVSIGGPSSILLPSPTEGYDAQLNA-- 574 Query: 524 SKQSDLRLLHMIEINEERFAKILRKW 549 + +++ + R A+++++W Sbjct: 575 -------IKNLVAQDPGRVAQVVKEW 593 >gi|15606425|ref|NP_213805.1| flagellar M-ring protein [Aquifex aeolicus VF5] gi|6225356|sp|O67241|FLIF_AQUAE RecName: Full=Flagellar M-ring protein gi|2983628|gb|AAC07196.1| Flagellar M-ring protein [Aquifex aeolicus VF5] Length = 489 Score = 163 bits (412), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 113/394 (28%), Positives = 205/394 (52%), Gaps = 33/394 (8%) Query: 31 VPIMLF---MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPS 87 +P++L A +++ +Y LY L D+N + L + + ++IS +G +I VP Sbjct: 29 IPLLLLSLGAVALIYLSQENYTVLYTGLSPDDLNAVVTELDKEGVKYKISPDGRTIYVPE 88 Query: 88 SMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSIS 147 ++ + R+ LAA+G+P GYELFDK + L+ F Q + RA+EGE+A+TI S+ Sbjct: 89 NVARELRLKLAAKGVPRKGI-VGYELFDK-SGIVLSRFQQLVNFKRAIEGELAKTIMSLD 146 Query: 148 GIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLVAAAVPNLDM 204 + ARVHIV+P+ F + ASV ++ + P + E AIR+LV+ +V NL Sbjct: 147 CVEFARVHIVLPEKSLFIREEEEAKASVFLK-LKPGCELTPEQVKAIRNLVSGSVENLKP 205 Query: 205 GDVTVLDSTGKLLTA---NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSA 261 V V+D G+ LTA E + N L + + + +E + K L G + Sbjct: 206 SQVVVVDDKGRDLTAYLDEEFKTN--ASQLKVKREFEKSLERKLQKTLEEVFGYGKVKVN 263 Query: 262 VVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVP 321 V AEL+ + + RE +YDPD + + K +R+ +++ + + N+P + R+ Sbjct: 264 VSAELDFSSMKKREELYDPD--LTAVVSEQKKKERTTSTRAQGIPGTQANIPPATGRQ-- 319 Query: 322 LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI 381 T++KE +NYE++ + I K++R+S+ +V++K K+ Sbjct: 320 -GGGELITERKESITNYEVSKREIYFEDKTIKVKRISVGLVIDK------------DVKV 366 Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 ++ E+ ++ A+ G++ +RGD ++I S+ F++ Sbjct: 367 NT--EELKNLIIASAGLDPKRGDQVSIVSVPFVK 398 >gi|238782822|ref|ZP_04626851.1| Flagellar M-ring protein [Yersinia bercovieri ATCC 43970] gi|238716245|gb|EEQ08228.1| Flagellar M-ring protein [Yersinia bercovieri ATCC 43970] Length = 569 Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 132/489 (26%), Positives = 226/489 (46%), Gaps = 58/489 (11%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92 I L +A F+ SP Y L+ + D I L++ N+ +R D G +I VP+ V + Sbjct: 39 ITLIIALLFWAKSPDYRVLFSNITDQDGGAIVSQLAQMNVPYRFEDRGGAIMVPADKVYE 98 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 AR+ LA GLP + G+EL D+ FG++ F +++ RALEGE++RTI+++ + A Sbjct: 99 ARLKLAQLGLPKGGA-VGFELLDQ-EKFGISQFSEQVNFQRALEGELSRTIETLGSVNGA 156 Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVL 210 RVH+ MP F + +P+ASV +R N + + + AI +L+A+AVP L VT++ Sbjct: 157 RVHLAMPKPSMFVREQKQPSASVTVRLNNGRLLEGEQVSAITYLIASAVPGLSADSVTIV 216 Query: 211 DSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDT 270 D G+LLT + + L ++ + + I L+ +G +N +S V A+L+ Sbjct: 217 DQNGRLLTQRGGQTTQTSQ-LKFTSEVEADFQQRIQSILSPIVGRNNVKSQVTAQLDFTL 275 Query: 271 QQIREIVYDPDSKVER-SIRLSK--DAQRSETSQPESAVTVEQNMPHVSDR--------- 318 + + P++ +R SIR S+ DA++ N P + Sbjct: 276 HEQTAEQFQPNTAPDRMSIRSSQSSDAEQGGKGGVGGVPGALSNQPSLPATAPITQAATP 335 Query: 319 --------------------------KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 P+P + ++++ +NYE++ Sbjct: 336 TAPGATGAAGAATAGATGAKGGAATVATPIPFN----NRRDNTTNYELDRTLTHIKRSTG 391 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 +ERLSIAVV+N L G SA K + +I+ +V A G ++ RGDT+ I + Sbjct: 392 SIERLSIAVVINY--LPTAEGESAPLPK--EQMEQISALVKEAVGFSAERGDTVNIVNSP 447 Query: 413 F--LENQLFNSGTVQVSFMDIL---SRHFATVINALVFLVGTLLVTFLGLHA--LRRLHN 465 F +E ++ Q F+++L R+ I A +F + +L L RL Sbjct: 448 FNNVEEEVAPPFWQQAGFINLLMAAGRYLLVAIVAWLFWRKAIKPAWLRNQELILARLEL 507 Query: 466 IDDAKKGEV 474 +A++ E+ Sbjct: 508 EKEARQAEL 516 >gi|300722640|ref|YP_003711930.1| flagellar basal-body MS-ring and collar protein [Xenorhabdus nematophila ATCC 19061] gi|297629147|emb|CBJ89743.1| flagellar biosynthesis; basal-body MS(membrane and supramembrane)-ring and collar protein [Xenorhabdus nematophila ATCC 19061] Length = 574 Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 121/423 (28%), Positives = 210/423 (49%), Gaps = 47/423 (11%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92 I + +A ++ SP Y LY L D I L++ N+ +R ++NGS+I +P+ V + Sbjct: 37 IAIVVALFLWLRSPDYRVLYSNLSDKDGGEIVTQLTQMNVPYRFAENGSAIMIPTEKVHE 96 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 R+ LA QGLP + +G+EL DK FG++ F +++ RALEGE+ART++S+ + +A Sbjct: 97 TRLKLAQQGLPKGGA-TGFELLDK-EKFGISQFSEQVNYQRALEGELARTVESLGPVQSA 154 Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVL 210 RVH+ MP F + P+ASV + + V + AI H+V+++V L G+VT++ Sbjct: 155 RVHLAMPKPSLFVREQKSPSASVTVGLLQGRVLDEGQINAIVHMVSSSVAGLPAGNVTIV 214 Query: 211 DSTGKLLTANEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 D +G+LLT ++ R++ L Q I++ I LA +G N + V A+++ Sbjct: 215 DQSGRLLTQSDATGRDLNTTQLKYTQEIENRFRHRIETILAPVVGRGNVHAQVTAQVDFS 274 Query: 270 TQQIREIVYDPDSKVER-SIRLSKDAQRSE-------------TSQPESAVTVEQNMPHV 315 ++ Y P+ + ++R + + + ++QP +A + P+ Sbjct: 275 RREETTEEYKPNQPPNQAAVRSKQSSSSEQSGGPLVGGVPGALSNQPSAAPSAPIEKPNT 334 Query: 316 ---------SDRK------------VPLPRSLEN--TDKKEEQSNYEINTKSIATTHDNY 352 SD K R + N ++ +E +NYE++ T Sbjct: 335 NANTNAKDNSDEKPDQQQRNGNNRNNSYERMVSNNHNNRYDETTNYEVDRTIRHTQLQAG 394 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGK--IDSYLAEINKIVSAATGINSRRGDTITITS 410 +ERLS+AVVVN T V G + + K + LA+I + A G ++ RGD++ +T+ Sbjct: 395 AVERLSVAVVVN---YTMVQGENGPETKPLMPEQLAQIEALTREAIGFSTDRGDSLNVTN 451 Query: 411 MDF 413 F Sbjct: 452 TPF 454 >gi|121533763|ref|ZP_01665590.1| flagellar M-ring protein FliF [Thermosinus carboxydivorans Nor1] gi|121307754|gb|EAX48669.1| flagellar M-ring protein FliF [Thermosinus carboxydivorans Nor1] Length = 511 Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 128/421 (30%), Positives = 215/421 (51%), Gaps = 37/421 (8%) Query: 5 DQLLQFFKSGTSLGRT-RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 +Q LQ ++S LG+ R LI AS V + + + ++ Y LY L++ D + Sbjct: 6 EQSLQIWRS---LGKKQRYLIAASAFFVFAAILLWSYWWGGRIDYVPLYTGLDLKDAGEV 62 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L E + +I NGS+I VP+ V + R+ LA+QGLP G+E+FD+ FG+T Sbjct: 63 VGKLKEMKVPHQIEANGSAILVPAKDVHRVRLELASQGLPRGYK--GFEIFDQ-TKFGIT 119 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 F Q++ ++AL+GE+ RTI+ ++ + ARVHIV+ + ++K TASVM++ + P Sbjct: 120 DFQQKVYLLQALQGELTRTIEQMAEVEKARVHIVLAEDSLYKKNEKPATASVMLK-LRPG 178 Query: 184 VYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ----- 235 V S E +R +LVA ++ L +VTV+D+ ++L ++++ ++ + Q Sbjct: 179 VQLSREQVRGIVNLVAHSIQGLKPENVTVVDNYARVLN-DQVDTPFTAGTIPVTQLELTK 237 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSK 292 IQ +++ N++ L LG + V ELN D + I +++P D + RS++ Sbjct: 238 KIQEDLQKNVHTLLEQVLGPGKAAARVSVELNFDQRTIDRQIFEPIVDDKGIIRSMQEMS 297 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 + R N+P V + N +KKE NYEIN Sbjct: 298 ETYRGSAPVAGGVPGTTANIPGY----VTGANNQSNYEKKEVTRNYEINETKEKVVTAPG 353 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 ++RL++AV+V+ S D+ K +S I K V++A G+N RGDTI++ S+ Sbjct: 354 AIKRLTVAVLVDA---------SIDRAKQES----IAKTVASAVGLNPSRGDTISVESIP 400 Query: 413 F 413 F Sbjct: 401 F 401 >gi|146312175|ref|YP_001177249.1| flagellar MS-ring protein [Enterobacter sp. 638] gi|145319051|gb|ABP61198.1| flagellar M-ring protein FliF [Enterobacter sp. 638] Length = 565 Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 121/414 (29%), Positives = 195/414 (47%), Gaps = 56/414 (13%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + SP Y LY + D I L++ NI +R +DNG +I VP+ V + R+ LA Q Sbjct: 44 LWAKSPDYRTLYSNVSDQDGGAIVTQLTQLNIPYRFADNGGAIEVPADKVHELRLRLAQQ 103 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F ++I RALEGE+ARTI+++ + ARVH+ MP Sbjct: 104 GLPKGGA-VGFELLDQ-EKFGISQFSEQINYQRALEGELARTIETLGPVKTARVHLAMPK 161 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + P+ASV + RA++ A+ HLV++AV L G+VTV+D +G Sbjct: 162 PSLFVREQKNPSASVTVTLEPGRALDEG---QISAVTHLVSSAVAGLPTGNVTVVDQSGH 218 Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT +N R++ L ++ I+ I L +G N + V A++N D ++ Sbjct: 219 LLTQSNTSSRDLNDAQLKYANDVEGRIQRRIEAILGPIVGSSNIHAQVTAQINFDNKEQT 278 Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQPESAVTVEQNMPH------ 314 E Y P+ +++ S+ +E ++QP A + + P Sbjct: 279 EEQYSPNGDAAQAVMRSRQLNTTEQIGGQNPGGVPGALSNQPAPANSAPISTPPANQQNG 338 Query: 315 -------------VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 S PR+ + E +NYE++ T + ++RLS+AV Sbjct: 339 QQNGQQNNQQQQTTSTAASSGPRN----SSRNETTNYEVDRTIRHTKMNVGDVQRLSVAV 394 Query: 362 VVNKGRLTE--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 VVN L + L + DQ K +I + A G +RGD++ + + F Sbjct: 395 VVNYKTLPDGKPLPLTTDQMK------QIEDLTREAMGFTEKRGDSLNVVNSPF 442 >gi|309779486|ref|ZP_07674247.1| flagellar M-ring protein FliF [Ralstonia sp. 5_7_47FAA] gi|308921727|gb|EFP67363.1| flagellar M-ring protein FliF [Ralstonia sp. 5_7_47FAA] Length = 610 Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 146/566 (25%), Positives = 267/566 (47%), Gaps = 77/566 (13%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y LY + SD I AL + N+ +R ++ G++I VP + V +AR+ LA+Q Sbjct: 69 LWSRAPDYRVLYSNVSDSDGGAIIAALQQMNVPYRFAEGGTAIMVPEASVHEARLKLASQ 128 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP +G+EL + FG + F +++ RALEGE+ARTIQ++ + +ARVH+ M Sbjct: 129 GLPKGG-QAGFELMEN-QKFGTSQFTEQVNYQRALEGELARTIQAMQEVQSARVHLAMTK 186 Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + A+P+ASV+++ + P +AI HLV+++VPNL + +VTV+D +G+LL Sbjct: 187 PSVFVREQAKPSASVLLK-LYPGRMLDRSQVQAIGHLVSSSVPNLPLANVTVVDQSGRLL 245 Query: 218 TANEMERNILG---KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQI 273 +++ + N G LS V+ ++ I L +G DN R+ V A++++D T+Q+ Sbjct: 246 SSS-FQDNASGLDPTQLSYVRDVEQGYIKRIEAILGPVVGEDNVRAQVTADVDLDNTEQM 304 Query: 274 REIV---YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPL-------- 322 E DP + RS ++ Q +Q N P + R +P Sbjct: 305 AESYRPNQDPANAAVRSTHTAEATQNKADAQ-GGVPGALSNQPPTAPRMLPTAPAPASAS 363 Query: 323 ----------PR------------SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 P+ S ++ ++ +NYE++ T + RLS+A Sbjct: 364 QPAATGPNGQPQQVAAANTGGTAASGNSSSTRDTTTNYEVDKTVRRTRAAVGTVRRLSVA 423 Query: 361 VVVN---KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 VVVN G+ + L ++ + ++N +V A G +++RGD++ + + F Sbjct: 424 VVVNYRGDGKTWKPLS--------EAEMVKLNALVKDAVGFDAKRGDSVNVVNSQF---- 471 Query: 418 LFNSGTVQVSFMDI-------LSRHFATVINALVFLVGTLLVTFLGLH-ALRRLHNIDDA 469 SGT+ +S D+ + ++ L +G L++ F + A+R + D Sbjct: 472 ---SGTLPMSKDDLPLWKQPDMIQYAIQAAKYLALAIGFLILVFAVIRPAIRSMGEKDAP 528 Query: 470 KKGEVGGKSILSP--PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 G+ P P I+ A + + A + ++++ L++ N + K Sbjct: 529 ATPTFVGREGEDPNAPIITGAAASAGPELEGPAAGADSEELPDALPQLKN--NDFEKKLE 586 Query: 528 DLRLLHMIEINEERFAKILRKWARSE 553 +R + + N A ++++W +E Sbjct: 587 TMR--RVAQSNPRAVAAVIKQWVSNE 610 >gi|197120199|ref|YP_002140626.1| flagellar M-ring mounting plate protein FliF [Geobacter bemidjiensis Bem] gi|197089559|gb|ACH40830.1| flagellar M-ring mounting plate protein FliF [Geobacter bemidjiensis Bem] Length = 523 Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 139/487 (28%), Positives = 226/487 (46%), Gaps = 46/487 (9%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L +LL+ F +L + L++ V L ++ F A N Y L+ L D I Sbjct: 5 LKKLLEPF---LALSTAKRLVVGGVALASLLGFAALIAVANKTDYRPLFANLTQEDAGEI 61 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L E + ++IS +G +I VPS V R+ LA+ GLP G+E+FD+ N FG+T Sbjct: 62 VKKLKEQKVPYQISPDGKAILVPSDNVYDLRLSLASDGLPQGG-GVGFEIFDRKN-FGMT 119 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 F+Q++ RAL+GE+ RTI I+G+ +ARVH+ +P+ F+ TASV+++ + Sbjct: 120 EFVQKLNYQRALQGELGRTIAQIAGVESARVHLALPEKALFKDQEKPATASVVLKMKSNR 179 Query: 184 VYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA---NEMERNILGKSLSIVQAIQ 238 + E I HLVA+++ +D VTVLD+ GK+L++ N+ + G +A + Sbjct: 180 QLREGEVQGIVHLVASSIEGMDPEQVTVLDTRGKVLSSHSPNDPTSKVAGARQDTQRAFE 239 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 E + L +G + V A + + E YDP+S RS QRSE Sbjct: 240 KTEEEKLQSLLDRVVGSGKSVARVSASFDFKQVEKYEERYDPESAAVRS------EQRSE 293 Query: 299 -----TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 +S V+ NM TD E NYE++ + Sbjct: 294 EKGGGSSTASGVPGVQSNMGRAQGAAGSTTGGGSKTD---ETLNYEVSRSTARIIEPVGS 350 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSY-------LAEINKIVSAATGINSRRGDTI 406 L ++S+A++V+ G+ L A G Y + +I +V +A G N+ RGD + Sbjct: 351 LSKVSVAILVD-GKYE--LSPGAKPGATPKYQPRSPDEMQKIESLVKSAVGFNAERGDQV 407 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALV--FLVGT--LLVTFLGLHALRR 462 T+ ++ F E + G Q S+ D A ++ L+ L+G L + F + L + Sbjct: 408 TVANIPFQETG--DQGGEQPSWYD------APIVQTLIKNGLIGLAFLALLFYVIRPLMK 459 Query: 463 LHNIDDA 469 + I+ A Sbjct: 460 MLKIEKA 466 >gi|110677673|ref|YP_680680.1| flagellar MS-ring protein [Roseobacter denitrificans OCh 114] gi|109453789|gb|ABG29994.1| flagellar M-ring protein FliF, putative [Roseobacter denitrificans OCh 114] Length = 540 Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 167/568 (29%), Positives = 267/568 (47%), Gaps = 53/568 (9%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 Q + T L R +I+A +A +P+ LY LE + AL Sbjct: 3 QIVTAWTGLPLRRQVIVALATGAMFFAILAMSRMATAPNMTLLYAGLENGAAGDVVAALE 62 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 + F + G SI V SS + R+ LA++GLP++S+ GYEL D ++ FG TS M + Sbjct: 63 QRGAVFEV--RGGSIFVDSSQRDELRMTLASEGLPANSTQ-GYELLDTLSGFGTTSQMFD 119 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR----AINPSV 184 RA EGE+ARTI S I ARVHI F++ G P ASV + AI P Sbjct: 120 AAYWRAKEGELARTIVSSPHISMARVHIASTGSNPFQR-GVTPKASVSVTPSGAAITP-- 176 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEIEM 243 + +AIR LV++AV L DV V+D+ G L+ A+E+ I G+ + V ++ Sbjct: 177 -QQGKAIRFLVSSAVAGLASEDVAVIDANGALIGNADEVAPTIGGEDKADV------LKA 229 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 + + L A +G N V + +++ IRE ++DP+S+V +S D + TS E Sbjct: 230 RVQRLLEARVGFGNSVVEVSVDTVTESEAIRERIFDPESRVA----ISTDTEERNTSSSE 285 Query: 304 SA---VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 + VTV N+P D S +N + + E+ NYE++ + ++R+++A Sbjct: 286 AGGGDVTVASNLPD-QDGAGGENSSSQNNETR-ERVNYEVSETEREILREPGAIKRVTVA 343 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 V+VN+ +T+ G+ + +S L + +V++A G + RGD ITI SM L Sbjct: 344 VLVNEMTITDEAGQETVTPRDESELEALRDLVASAVGFDEARGDIITIKSMGLQSVPL-- 401 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL---HNIDDAKKGEVGGK 477 GT + ++S V++A+ + L+ LGL +R L ++++DA Sbjct: 402 QGT--AAGTSLMSNFNIDVMSAIQMAILALVTLILGLFVVRPLLARNDLNDA-------P 452 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSN-------QDIFSHSRNLQS-RINSYVSKQSDL 529 ++ + P + T GL + I D D S L I S +S+ Sbjct: 453 AVAALPGATDGETDGLGLDGEIDGDDFQLPDLPVISDFGDASGELPDLNIGSGMSEDPVD 512 Query: 530 RLLHMIEINEERFAKILRKWARSEIEDR 557 RL MI ++ +ILR W +ED+ Sbjct: 513 RLRTMIGERQDETVEILRSW----LEDK 536 >gi|83747628|ref|ZP_00944664.1| FliF [Ralstonia solanacearum UW551] gi|207739709|ref|YP_002258102.1| flagellar m-ring protein [Ralstonia solanacearum IPO1609] gi|83725680|gb|EAP72822.1| FliF [Ralstonia solanacearum UW551] gi|206593091|emb|CAQ59997.1| flagellar m-ring protein [Ralstonia solanacearum IPO1609] Length = 611 Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 140/465 (30%), Positives = 235/465 (50%), Gaps = 74/465 (15%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y LY + SD I AL + N+ +R +D GS+I VP + V +AR+ LAAQ Sbjct: 66 LWSRAPDYRVLYSNVADSDGGAIIAALQQMNVPYRFADGGSAIMVPEANVHEARLKLAAQ 125 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP +G+EL + FG + F +++ RALEGE+ARTIQ++ + +ARVH+ + Sbjct: 126 GLPKGGL-AGFELMEN-QKFGTSQFAEQVNYQRALEGELARTIQAMQEVQSARVHLALSK 183 Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + A+P+ASV+++ + P +AI HLV+++VPNL + +VTV+D +G+LL Sbjct: 184 PSVFVREQAKPSASVLLK-LYPGRMLDRSQVQAIGHLVSSSVPNLPLANVTVVDQSGRLL 242 Query: 218 TANEMERNILG---KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQI 273 +++ + N G L+ V+ I+ I L +G DN R+ V A++++D T+Q+ Sbjct: 243 SSS-FQDNASGLDPTQLNYVRDIEQGYIKRIEAILGPVVGEDNVRAQVTADVDLDNTEQM 301 Query: 274 REIV---YDPDSKVERSIRLSKDAQRSE----------TSQPESAVTV------------ 308 E DP + V RS S+ Q ++QP +A + Sbjct: 302 AETYRPNQDPANGVVRSTHTSESTQNKAGAQGGVPGALSNQPPTAPRMLPTAPAPASQQA 361 Query: 309 -----EQNMPHVSDRKVPLPRSLEN---TDKKEEQSNYEINTKSIATTHDNYKL-ERLSI 359 QN P+ + ++ N + ++ NYE++ K++ T + RLS+ Sbjct: 362 AAGQNGQNAPNGQQQAAATGQAATNNVESSARDTTVNYEVD-KTVRRTRAAVGIVRRLSV 420 Query: 360 AVVVN---KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 AVVVN G+ + L D+ + ++N +V A G +++RGD++ + + F Sbjct: 421 AVVVNYRADGKTWKPLS--------DADMVKLNALVKDAVGYDAKRGDSVNVVNSQF--- 469 Query: 417 QLFNSGTVQVSFMDI-LSR-----HFATVINALVFLVGTLLVTFL 455 SGT+ S D+ L + H+A I A + G L + FL Sbjct: 470 ----SGTLPTSRDDLPLWKQPEMIHYA--IQAAKY--GALAIGFL 506 >gi|242278626|ref|YP_002990755.1| flagellar M-ring protein FliF [Desulfovibrio salexigens DSM 2638] gi|242121520|gb|ACS79216.1| flagellar M-ring protein FliF [Desulfovibrio salexigens DSM 2638] Length = 534 Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 128/453 (28%), Positives = 214/453 (47%), Gaps = 31/453 (6%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L + F+ T R I LA+ +++ +L + F++N Y LY KL D +R+ Sbjct: 9 LGKFQTFWSDRTVSQRIMIGGLAATVVIAFILMV---FWLNQTEYRVLYTKLYAEDASRV 65 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L ++I DNGS+I VP+ V R+ +A +G GYE+FD+V G T Sbjct: 66 VSILQSTKEPYKIQDNGSTILVPADKVYDLRLKIAGEG-ALHGQGIGYEIFDEVQ-IGQT 123 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 F+Q I RAL+GE+ARTI + ARVH+V+P F + P+ASV+++ + Sbjct: 124 DFIQRINYQRALQGELARTISEFPQVERARVHLVLPAKSLFIEEQVDPSASVVLKLKDGE 183 Query: 184 --VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE----MERNILGKSLSIVQAI 237 K + + +LV +V L VT+ D G++L E + NI L + Sbjct: 184 KLADKQIKGVLNLVVMSVEGLKPEHVTITDMRGQVLYQPEDDGGLGLNITNSQLEYKSGL 243 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + +IE I + L +G D + V A+L+ + I+ YDPD +V RS + S++ R Sbjct: 244 ESKIEQRIQRLLMPIVGPDKVIAKVNADLDFRQRTIKTEAYDPDGQVARSEQTSEETTR- 302 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEE--QSNYEINTKSIATTHDNYKLE 355 V+ +P + R + D E +NYEIN + +L+ Sbjct: 303 ------GTANVDGGVPEANFRGDGFTGTATTQDSARETRTTNYEINKEEQQIIVPVGELK 356 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKI------DSYLAEINKIVSAATGINSRRGDTITIT 409 RLS+AV+V+ G T ++ D G++ + + I ++VS+A G + RGD + ++ Sbjct: 357 RLSVAVIVD-GTYT----KNPDTGEMTYVPRSEEEMQRIRELVSSAVGYDEVRGDIVEVS 411 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINA 442 +M F +F + + ++ R +N Sbjct: 412 NMSFGMQDMFGDEGLMRTMLEYAQRLGKPFLNG 444 >gi|83647861|ref|YP_436296.1| flagellar MS-ring protein [Hahella chejuensis KCTC 2396] gi|83635904|gb|ABC31871.1| flagellar M-ring protein FliF [Hahella chejuensis KCTC 2396] Length = 572 Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 143/567 (25%), Positives = 258/567 (45%), Gaps = 47/567 (8%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 D +L F + L R L+L + I + A + N P Y LY + V D +S Sbjct: 26 DMMLGFNR----LSLLRQLVLMVGVAASIAMGAAIILWANEPAYQPLYPDMSVYDSTEVS 81 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 LS+ NI F++ ++ V + V AR+ LAA G+ + GYEL DK G + Sbjct: 82 DILSQNNIHFKVEPKSGALLVAAEDVSAARMRLAAAGV-TQDRTIGYELLDKDQGLGSSQ 140 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP-S 183 FM+ R LEGE+ARTI S+ + ARVH+ +P F + RP+ASV++ S Sbjct: 141 FMESTRYRRGLEGELARTISSLRNVKNARVHLAIPKQSVFVRDKRRPSASVLVELTGSRS 200 Query: 184 VYK-SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240 +++ EAI +LVA +VP +D DVTV+D G LL+ N + + L + + ++ Sbjct: 201 LHQDQVEAIVNLVAGSVPEMDHRDVTVVDQRGNLLSQNNLTEDDLRTSREFQYARRMEEV 260 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS------IRLSKDA 294 + +N L LG FR+ V A+++ + + ++PD + RS R++ Sbjct: 261 LTGRVNSILEPILGPGRFRAEVSADVDFTAVEQAQETFNPDPQAVRSEQEIGEQRIAGSN 320 Query: 295 Q---RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 Q + ++QP V + S +K+ NYE++ T Sbjct: 321 QGVPGALSNQPPGVAAVPEQAGVAGAAANATANSQATDIRKQTVRNYEVDRTVSYTKQHQ 380 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 K++RL++AVVV+ R G + ++ L + +V A G ++ RGD++ + + Sbjct: 381 GKVQRLTVAVVVDDLRRVGADGAVTTEAWPEAELQRLTVLVRDAVGYSAARGDSVNVINT 440 Query: 412 DFLENQL----FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 F+ ++ + + + ++ L + + L+ + G + TF L + Sbjct: 441 PFMAEEVEISDYEAPLWEQPWIRELIKWGVAFLIVLILVFGVIRPTFKNLSS-----GGA 495 Query: 468 DAKK----GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF-SHSRNLQSRINSY 522 DAK G+ G + L ++ +G+ +++ L+++ + S + +IN+ Sbjct: 496 DAKNLALAGDEDGLAEL------ESLGSGVGEGESVGLNAAGDFLLPGSSEGYEKKINA- 548 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKW 549 L +I + R A+++R+W Sbjct: 549 --------LKGLIAEDPGRVAQVVRQW 567 >gi|226941278|ref|YP_002796352.1| FliF1 [Laribacter hongkongensis HLHK9] gi|226716205|gb|ACO75343.1| FliF1 [Laribacter hongkongensis HLHK9] Length = 571 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 129/471 (27%), Positives = 230/471 (48%), Gaps = 36/471 (7%) Query: 18 GRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS 77 G ++L+ + V +L +AA + P Y L+ L + +++ AL++ N+ ++++ Sbjct: 28 GNKKLLLFGGMAAVASIL-VAAYLYTREPAYKVLFSNLPDREGGQVTEALTKLNVPYQLA 86 Query: 78 DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137 D G I VP+ V R+ LA++GLP +S G+EL D FG++ F +++ RA+EG Sbjct: 87 D-GGVIRVPAEQVYSTRLKLASEGLPKASG-IGFELMDN-QKFGISQFAEQVNYQRAVEG 143 Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA---EAIRHL 194 E+ARTI+++ + +ARVH+ MP F + PTASV++ + P A IR+L Sbjct: 144 ELARTIEALGVVESARVHLAMPKQSVFVREQQLPTASVLLN-LRPGFILDAGQIAGIRNL 202 Query: 195 VAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILG---KSLSIVQAIQHEIEMNINKALA 250 VA+AVP L ++T++D G L++ +ME G + L V+ I+ + I L Sbjct: 203 VASAVPGLPQKNITIVDQEGNLISRMPDMEDGSAGLSRRQLDYVRQIETSLTKRIEAILE 262 Query: 251 AFLGVDNFRSAVVAELNM-DTQQIREIV---YDPDSKVERSIRLSKDAQRSE-------- 298 +G N R+ V A ++ + +Q E P++ RS + S+ R E Sbjct: 263 PIVGSGNARAQVTAAVDFSEVEQTAETFNPNTPPNAGAIRSQQTSESQTREEAPQGGVPG 322 Query: 299 --TSQPESAVTVEQNMPHVSDRKV-PLPRSLENTDK-----KEEQSNYEINTKSIATTHD 350 ++QP +A +P + + P P +N + KE +NYE++ Sbjct: 323 ALSNQPPNAAAAPVTLPPGTQAGLMPAPNGQQNQARPVKSSKEATTNYEVDRTIQHVRQQ 382 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 L+R++ AVVVN R T G + + + +++K+V A G RGD++ + + Sbjct: 383 TGALKRVTAAVVVNFKRTTTADGNAKMTPLSEQEMQQLDKLVREAMGFTQARGDSVQVVN 442 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461 F + + +Q D S + + L +++G L+V +L +R Sbjct: 443 ASFADT-AGSKAALQDRLFDYASNNPGEI---LKWVLGALVVLYLLFGVIR 489 >gi|39995518|ref|NP_951469.1| flagellar M-ring protein FliF [Geobacter sulfurreducens PCA] gi|39982281|gb|AAR33742.1| flagellar M-ring protein FliF [Geobacter sulfurreducens PCA] gi|298504518|gb|ADI83241.1| flagellar M-ring mounting plate protein FliF [Geobacter sulfurreducens KN400] Length = 527 Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 125/412 (30%), Positives = 201/412 (48%), Gaps = 33/412 (8%) Query: 27 SVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVP 86 SVI I++ +A N Y L+ L D I L E + +RI+ +G +I VP Sbjct: 30 SVIAFTILILVA-----NRTDYRPLFTNLTSEDAGEIVTKLKEQKVPYRIAADGKAILVP 84 Query: 87 SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146 S V R+ LA+ GLP G+E+FD+ N FG+T F+Q++ RAL+GE++RTI I Sbjct: 85 SDKVYDLRLSLASDGLPQGG-GVGFEIFDRKN-FGMTDFVQKLNYQRALQGELSRTISQI 142 Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEAIRHLVAAAVPNLDM 204 SG+ ARVH+V+P+ F++ TASV+++ + + I HLVA+A+ ++ Sbjct: 143 SGVEQARVHLVIPEKSLFKEDEKPATASVVLKVKGQRQLRENDVQGIVHLVASAIEGMNP 202 Query: 205 GDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFL--GVDNFRSAV 262 VTVLD GKLL+ N + GK + +Q +Q E + + L + L V +S Sbjct: 203 EHVTVLDQKGKLLSKN-TPGDAAGKMTASMQEVQRAYERSTEERLQSLLDKAVGAGKSVA 261 Query: 263 VAELNMDTQQIR--EIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVS---D 317 D +Q+ E YDP++ V + QRSE Q S VT +P V Sbjct: 262 RVSAVFDFRQVERYEEKYDPETVV-------RSEQRSEEKQDGSTVT--GGVPGVQTNLG 312 Query: 318 RKVPLPRSLENTDKKEEQS-NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA 376 R P K +++ NYE++ + T L ++S+A++V+ G+ Sbjct: 313 RTAGQPAGTSGGGSKNDETLNYEVSRATARTIEPVGTLSKVSVAILVDGKYDAAAAGKDG 372 Query: 377 DQGKID------SYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 + K L +I+ +V ++ G N RGD +T+ ++ F + +G Sbjct: 373 KEAKPKYTPRSPDELQKIDALVKSSVGFNVERGDQVTVVNIPFQDTGDVGAG 424 >gi|322616962|gb|EFY13870.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618201|gb|EFY15093.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625872|gb|EFY22691.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626324|gb|EFY23134.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632739|gb|EFY29484.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639081|gb|EFY35774.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640397|gb|EFY37053.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647242|gb|EFY43741.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649910|gb|EFY46331.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322660296|gb|EFY56534.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662977|gb|EFY59184.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668162|gb|EFY64321.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674079|gb|EFY70173.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675569|gb|EFY71643.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322686714|gb|EFY82692.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195398|gb|EFZ80578.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198074|gb|EFZ83191.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323207544|gb|EFZ92492.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211017|gb|EFZ95877.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217529|gb|EGA02248.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219604|gb|EGA04088.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323231551|gb|EGA15664.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235994|gb|EGA20073.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240564|gb|EGA24607.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245456|gb|EGA29456.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323250226|gb|EGA34118.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253963|gb|EGA37787.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255510|gb|EGA39271.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262107|gb|EGA45670.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266230|gb|EGA49720.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270661|gb|EGA54102.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 560 Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 134/448 (29%), Positives = 217/448 (48%), Gaps = 54/448 (12%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V I++ M + +P Y L+ L D I L++ NI +R ++ + Sbjct: 28 LIVAGSATVAIVVAMV--LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGA 85 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE+ART Sbjct: 86 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELART 143 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAA 197 I+++ + +ARVH+ MP F + P+ASV + RA++ A+ HLV++ Sbjct: 144 IETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALD---EGQISAVVHLVSS 200 Query: 198 AVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVD 256 AV L G+VT++D +G LLT +N R++ L ++ I+ I L+ +G Sbjct: 201 AVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNG 260 Query: 257 NFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE--------------TSQP 302 N + V A+L+ ++ E Y P+ ++ S+ SE ++QP Sbjct: 261 NVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQP 320 Query: 303 ----ESAVTVE-------QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 E+ + QN P S NT ++ E SNYE++ T + Sbjct: 321 APPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRNT-QRNETSNYEVDRTIRHTKMNV 379 Query: 352 YKLERLSIAVVVNKGRLTE--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 +ERLS+AVVVN L + L +ADQ K +I + A G + +RGDT+ + Sbjct: 380 GDIERLSVAVVVNYKTLADGKPLPLTADQMK------QIEDLTREAMGFSDKRGDTLNVV 433 Query: 410 SMDFLENQLFNSG-----TVQVSFMDIL 432 + F + + N+G Q SF+D L Sbjct: 434 NSPF--SAVDNTGGELPFWQQQSFIDQL 459 >gi|300311375|ref|YP_003775467.1| hypothetical protein Hsero_2059 [Herbaspirillum seropedicae SmR1] gi|300074160|gb|ADJ63559.1| hypothetical protein Hsero_2059 [Herbaspirillum seropedicae SmR1] Length = 569 Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 119/398 (29%), Positives = 197/398 (49%), Gaps = 35/398 (8%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 Y L+ D I +L + N+ ++ SD G++I VP +MV AR+ LAAQGLP Sbjct: 47 EYRVLFSNFNDRDGGAIVASLQQMNVPYKYSDGGTAILVPENMVHDARLKLAAQGLPKGG 106 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 N G+EL + G++ F++++ RALEGE+AR++ S++ + ARVH+ +P F + Sbjct: 107 -NVGFELMEN-QKLGISQFLEQVNFQRALEGELARSVGSLASVQTARVHLALPKASVFVR 164 Query: 167 IGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL--TANE 221 +PTASV++ ++ P Y + AI HLVA++VP L VT++D G LL T + Sbjct: 165 DQQKPTASVVL-SLYPGRYLDPQQVSAIVHLVASSVPELSPKAVTIVDQNGNLLSDTTKQ 223 Query: 222 MERNILGKS-LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP 280 + N L + L VQ +Q +I + +A +G N R+ A+++ + Y P Sbjct: 224 AQPNTLDPTQLKYVQDMQQDIVKRVESIIAPIVGNGNVRAEATADVDFSRSEQASEAYKP 283 Query: 281 ----DSKVERSIRLSKDAQRSE---------TSQPESAVTVEQNMPHVS----------- 316 DS RS + S+ S ++QP + T P V+ Sbjct: 284 NQTKDSAAVRSKQSSEANSASNGTSGVPGALSNQPPAPATAPIVNPAVANGAANQTGAAT 343 Query: 317 -DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS 375 + +P P + N+ +K+E NYE++ T + RL++AVVVN R + G+ Sbjct: 344 PNGALPTPTATGNS-RKDETINYEVDKTVRYTQQPMGGVRRLTVAVVVNYKRTMDNTGKI 402 Query: 376 ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 + ++ +I +V A G N RGD++ + + F Sbjct: 403 VMRPLTEAERNQITDLVKEAMGYNKDRGDSLNVVNTQF 440 >gi|16760913|ref|NP_456530.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|25304719|pir||AB0752 flagellar basal-body M-ring protein [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503210|emb|CAD05717.1| flagellar basal-body M-ring protein [Salmonella enterica subsp. enterica serovar Typhi] Length = 560 Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 134/448 (29%), Positives = 217/448 (48%), Gaps = 54/448 (12%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V I++ M + +P Y L+ L D I L++ NI +R ++ + Sbjct: 28 LIVAGSTAVAIVVAMV--LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGA 85 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE+ART Sbjct: 86 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELART 143 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAA 197 I+++ + +ARVH+ MP F + P+ASV + RA++ A+ HLV++ Sbjct: 144 IETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEG---QISAVVHLVSS 200 Query: 198 AVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVD 256 AV L G+VT++D +G LLT +N R++ L ++ I+ I L+ +G Sbjct: 201 AVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNG 260 Query: 257 NFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE--------------TSQP 302 N + V A+L+ ++ E Y P+ ++ S+ SE ++QP Sbjct: 261 NVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQP 320 Query: 303 ----ESAVTVE-------QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 E+ + QN P S NT ++ E SNYE++ T + Sbjct: 321 APPNEAPIATPPTNQQNAQNTPQTSTSTNSNNAGPRNT-QRNETSNYEVDRTIRHTKMNV 379 Query: 352 YKLERLSIAVVVNKGRLTE--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 +ERLS+AVVVN L + L +ADQ K +I + A G + +RGDT+ + Sbjct: 380 GDIERLSVAVVVNYKTLADGKPLPLTADQMK------QIEDLTREAMGFSDKRGDTLNVV 433 Query: 410 SMDFLENQLFNSG-----TVQVSFMDIL 432 + F + + N+G Q SF+D L Sbjct: 434 NSPF--SAVDNTGGELPFWQQQSFIDQL 459 >gi|302392396|ref|YP_003828216.1| flagellar M-ring protein FliF [Acetohalobium arabaticum DSM 5501] gi|302204473|gb|ADL13151.1| flagellar M-ring protein FliF [Acetohalobium arabaticum DSM 5501] Length = 524 Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 122/383 (31%), Positives = 193/383 (50%), Gaps = 30/383 (7%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + + P+Y L+ L + D I+ L E ID+++ +G+ ISVP+ V + R+ LA++G Sbjct: 44 WASQPNYVTLFNDLTMKDAGAITKQLDEKQIDYKLGADGTKISVPAQKVHQVRLDLASKG 103 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP + G+E+FDK N G T F Q++ RAL GE+AR+I + + A+V I P Sbjct: 104 LPQKGA-VGFEIFDK-NQLGSTDFEQQVNFYRALSGELARSIMHLQNVKFAKVQISAPRE 161 Query: 162 GSFRKIGARPTASVMIRAINPSV--YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 + ASVM++ + K E I +LVA++V +L +VTV+D G LLTA Sbjct: 162 SLYLDKKKVVKASVMLKMKEYAELDLKQVEGITNLVASSVEDLKPENVTVVDDRGNLLTA 221 Query: 220 --NEMER----NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI 273 N+ ++ + K L + + +E +N L+ LG DN V A+LN D +Q+ Sbjct: 222 ELNKEDKFNNTDFSPKLLELENDFESNMESELNTMLSKVLGPDNVVVRVNAKLNFDRRQM 281 Query: 274 REIVYDP---DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD 330 Y+P D V RS + ++ + + P E N+P + N D Sbjct: 282 ESRTYEPVNDDQGVVRSEQSTEVSYSGQGDTPSGVPGTESNIPGYEGGE----EQSSNYD 337 Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINK 390 K+E +NYEIN K T +E++S+AV+V+K L+ S I + Sbjct: 338 KEETTTNYEINEKIETYTQVPGDVEKMSVAVMVDK-ELSPAQTES------------IRQ 384 Query: 391 IVSAATGINSRRGDTITITSMDF 413 V +A G ++ RGD ITIT+ +F Sbjct: 385 SVESAVGYSAERGDQITITNFEF 407 >gi|299068777|emb|CBJ40017.1| FliF: Flagellar biosynthesis protein, M-ring protein, Belongs to the fliF family [Ralstonia solanacearum CMR15] Length = 611 Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 141/483 (29%), Positives = 234/483 (48%), Gaps = 78/483 (16%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y LY + SD I AL + N+ +R +D GS+I VP + V +AR+ LAAQ Sbjct: 66 LWSRAPDYRVLYSNVADSDGGAIIAALQQMNVPYRFADGGSAIMVPEANVHEARLKLAAQ 125 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP +G+EL + FG + F++++ RALEGE+ARTIQ++ + +ARVH+ + Sbjct: 126 GLPKGGL-AGFELMEN-QKFGTSQFVEQVNYQRALEGELARTIQAMQEVQSARVHLALSK 183 Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + +P+ASV+++ + P +AI HL+A++VP+L + +VTV+D +G+LL Sbjct: 184 PSVFVREQVKPSASVLLK-LYPGRMLDRSQVQAIGHLLASSVPDLPLANVTVVDQSGRLL 242 Query: 218 TANEMERNILG---KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQI 273 +A + N G L+ V+ I+ I L LG DN R+ V A++++D T+Q+ Sbjct: 243 SA-AFQDNASGLDPTQLNYVRDIEQGYIKRIEAILGPVLGDDNVRAQVTADVDLDNTEQM 301 Query: 274 REIV---YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVP--------- 321 E DP + RS S+ Q +Q N P + R +P Sbjct: 302 AETYRPNQDPANGAVRSTHTSESTQNKAGAQ-GGVPGALSNQPPTAPRMLPTAPAPAAQQ 360 Query: 322 ------------------------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 S+E++ ++ +NYE++ T + RL Sbjct: 361 AAAGQNGQNGQNGQQQGAAGTGQAAANSVESS-ARDITTNYEVDKTVRRTRAAVGTVRRL 419 Query: 358 SIAVVVN---KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 S+AVVVN G+ + L D+ + ++N +V A G +++RGD++ + + F Sbjct: 420 SVAVVVNYRADGKTWKPLS--------DAEMTKLNALVKDAVGYDAKRGDSVNVVNSQF- 470 Query: 415 ENQLFNSGTVQVSFMDI-LSR-----HFATVINALVF---LVGTLLVTFLGLHALRRLHN 465 SGT+ S D+ L + H+A I A + +G L++ F + L R N Sbjct: 471 ------SGTLPTSKDDLPLWKQPEMIHYA--IQAAKYGALAIGFLILVFAVIRPLIRSMN 522 Query: 466 IDD 468 D Sbjct: 523 KKD 525 >gi|224826633|ref|ZP_03699734.1| flagellar M-ring protein FliF [Lutiella nitroferrum 2002] gi|224601234|gb|EEG07416.1| flagellar M-ring protein FliF [Lutiella nitroferrum 2002] Length = 576 Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 129/453 (28%), Positives = 209/453 (46%), Gaps = 32/453 (7%) Query: 25 LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSIS 84 LA+V V + L + R +P Y L+ L D +I+ AL + N+ ++I G IS Sbjct: 38 LAAVFSVIVGLLILNR----TPDYKVLFANLADRDGGQITAALQQMNVPYQIG-GGGVIS 92 Query: 85 VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144 VPS V R+ LAAQGLP + G+EL D FG++ F +++ RA+EGE+ARTI+ Sbjct: 93 VPSDKVYDVRLKLAAQGLPKAGG-VGFELMDN-QKFGISQFAEQVNYQRAIEGELARTIE 150 Query: 145 SISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNL 202 +I + +ARVHI +P F + +PTASVM+ V + I HLV+++VPNL Sbjct: 151 AIGAVESARVHIAIPKQSVFVRDQQQPTASVMLNLYPGRVLDGGQISGILHLVSSSVPNL 210 Query: 203 DMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 +VTV+D G LL++ N G + L V I+ + I L G N R Sbjct: 211 SARNVTVVDQDGNLLSSQSDVNNAAGLDQRQLGYVHQIESDFVKRIEGILEPIFGKGNVR 270 Query: 260 SAVVAELNMDTQQIREIVYDPDS--------------KVERSIRLSKDAQRSETSQPESA 305 + V A ++ + + P+S K+ L + ++QP SA Sbjct: 271 AQVTANVDFSEVEQTSETFRPNSTPNPSATRSQQIVEKLGSGSNLPGGVPGALSNQPPSA 330 Query: 306 VTVEQNMPHVSDRKVPL----PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 + +P + P +++ +NYE++ T L+RLS AV Sbjct: 331 ASAPLTLPPGAAPGTATLSGQPLGQNGALERQLITNYEVDKTIQHTKLPKGVLKRLSAAV 390 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 VVN + + G + +IN +V G N+ RGDT+ + + F N Sbjct: 391 VVNYRLMPDRNGEVKPTPLTAQEIQQINNLVRETMGYNTERGDTLNVVNAAFAGNA--PP 448 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTF 454 ++Q +D +S + ++ ++ + L + F Sbjct: 449 ASLQEKVVDYVSSNATDLVKYVLLAIAVLYLLF 481 >gi|260886631|ref|ZP_05897894.1| flagellar M-ring protein FliF [Selenomonas sputigena ATCC 35185] gi|330839537|ref|YP_004414117.1| flagellar M-ring protein FliF [Selenomonas sputigena ATCC 35185] gi|260863774|gb|EEX78274.1| flagellar M-ring protein FliF [Selenomonas sputigena ATCC 35185] gi|329747301|gb|AEC00658.1| flagellar M-ring protein FliF [Selenomonas sputigena ATCC 35185] Length = 529 Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 120/458 (26%), Positives = 220/458 (48%), Gaps = 31/458 (6%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 R R +I+ + LV I + + + P L+ +E D ++ L E +++ I + Sbjct: 18 RQRYMIIGAAALVFIAIVAGSIIYGGKPDMVPLFTNMEAKDAGEVAAKLKENKVNYEIQE 77 Query: 79 --NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136 G++I VP+ V R+ LAA+GLP N G+ELFD + G+T F ++ ++AL+ Sbjct: 78 GGQGTTILVPAKSVDSTRLDLAAEGLPRG--NKGFELFDD-SKLGVTEFQNKVNYLQALQ 134 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYKSAEAIRHL 194 GE+ RTI+ I + ARVHIV+P+ ++K TAS+M ++A K + I +L Sbjct: 135 GELTRTIEQIDAVEKARVHIVLPEDSLYKKNEKPATASIMLKLKANMQLSKKEVKGIVNL 194 Query: 195 VAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGK----SLSIVQAIQHEIEMNINKAL 249 A +V L ++T++D +GK+L +E + +G+ + + + +Q ++ N+ L Sbjct: 195 AAHSVQGLTPENITIVDESGKILNDPDENGDDGVGQKTLTQMEMTKKVQDNLQKNVQSLL 254 Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQRSETSQPESAV 306 A LG + EL+ D + +Y P +S + RS + + ++ ++QP Sbjct: 255 DASLGEGKSFVRISVELDFDQKMTDSQIYTPVVDESGIVRSQQTTSESYAGTSTQPGGPA 314 Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 + N+P ++ S ++KE +NYE+N + + RL++AV+VN Sbjct: 315 GTQSNVPGYVEQN---NNSQAQYERKENTTNYEVNEEKRKVVASPGSIRRLTVAVLVND- 370 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 Q + +S L + V +A GIN RGDT+++ + F + Sbjct: 371 --------DVTQAQQESIL----RSVRSAAGINPDRGDTVSVEPLPFSTEARDKKLADEQ 418 Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 + D L R F + A + ++ ++ + L +RL Sbjct: 419 AERDRLDREFYLQLAAFLLVIALIVGSILMYRRKKRLE 456 >gi|148266223|ref|YP_001232929.1| flagellar M-ring protein FliF [Geobacter uraniireducens Rf4] gi|146399723|gb|ABQ28356.1| flagellar M-ring protein FliF [Geobacter uraniireducens Rf4] Length = 525 Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 132/467 (28%), Positives = 223/467 (47%), Gaps = 38/467 (8%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 +L + LI+A V + ++ F A N Y L+ L D I L + + ++ Sbjct: 14 TLPPAKRLIVAGVAVASLVAFAALIVVANKTDYRPLFANLTTEDAGEIVKKLKDQKVPYQ 73 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135 I+ +G +I VPS V R+ LA++GLP G+E+FD+ N FG+T F+Q++ RAL Sbjct: 74 IAADGKAILVPSDKVYDLRLSLASEGLPQGG-GVGFEIFDRKN-FGMTEFVQKLNYQRAL 131 Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRH 193 +GE++RTI ++G+ ARVH+ + + F+ TASV+++ + + E + H Sbjct: 132 QGELSRTIAQLAGVEQARVHLAIAEKSLFKDNEKPTTASVVLKMKSNHTLRENEVQGVVH 191 Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFL 253 LVA+++ +D +VTVLDS GK+L+ ++ K S +Q Q E N+ L L Sbjct: 192 LVASSIEGMDPENVTVLDSRGKMLS-KVGASDLTSKMTSTMQETQRTYEKNLEDRLQTLL 250 Query: 254 G--VDNFRSAVVAELNMDTQQIR--EIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309 V +S D +Q+ E YDP+S RS QRSE + A TV Sbjct: 251 DKVVGTGKSVARVSATFDFKQVEKYEERYDPESAAVRS------EQRSE--EKGGASTVA 302 Query: 310 QNMPHVSD---RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 +P V + P + K +E NYE++ + + ++S+A++V+ Sbjct: 303 AGVPGVQSNMAKAAPAGVTSGGGSKSDETLNYEVSRSTARIIEPVGSMNKVSVAILVDGK 362 Query: 367 RLTE------VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE----- 415 + ++ Q + L +I +V +A G N+ RGD +T+ ++ F E Sbjct: 363 YVAPASAKEGATAKAKYQPRTPDELQKIEALVKSAVGFNAERGDQVTVANIPFQETDDGG 422 Query: 416 ----NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 ++ +N+ +Q ++L A AL+FLV L+ L H Sbjct: 423 ASDQDKWWNAPIMQALLKNLL---IALGFFALLFLVIRPLLKTLKPH 466 >gi|295098292|emb|CBK87382.1| flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 543 Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 117/408 (28%), Positives = 196/408 (48%), Gaps = 50/408 (12%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + SP Y LY L D I L++ NI +R +DNG ++ VP+ V + R+ LA Q Sbjct: 28 LWAKSPDYRTLYSNLSDQDGGAIVTQLTQMNIPYRFADNGGALEVPADKVHELRLRLAQQ 87 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 88 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 145 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + P+ASV + RA++ A+ HLV++AV L G+VT++D +G Sbjct: 146 PSLFVREQKSPSASVTVNLEPGRALDEG---QISAVTHLVSSAVAGLPPGNVTLVDQSGH 202 Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT +N R++ L ++ ++ I L +G N + V A+++ ++ Sbjct: 203 LLTQSNTAGRDLNDAQLKYAADVEGRLQRRIEAILGPVVGSSNVHAQVTAQIDFSNKEQT 262 Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQPESAVTVEQNMPHV----- 315 E Y P+ R++ S+ +E ++QP A + P Sbjct: 263 EEQYAPNGDASRAVLRSRQINETEQVGGQYPGGVPGALSNQPAPANAAPISTPPANPQNG 322 Query: 316 --------SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367 S PR+ + E +NYE++ T + ++RLS+AVVVN Sbjct: 323 QQTNQQTTSTANSTGPRN----SSRNETTNYEVDRTIRHTKLNTGDIQRLSVAVVVNYKT 378 Query: 368 LTE--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 L + L +A+Q + +I + A G + +RGDT+ + + F Sbjct: 379 LPDGKPLPLTAEQ------MKQIEDLTREAMGFSEKRGDTLNVVNSPF 420 >gi|220904839|ref|YP_002480151.1| flagellar M-ring protein FliF [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869138|gb|ACL49473.1| flagellar M-ring protein FliF [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 547 Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 114/383 (29%), Positives = 195/383 (50%), Gaps = 17/383 (4%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 ++ P Y LY L D + + AL + +RI+DNG++I VP +V RI +A +G Sbjct: 44 WMGRPEYRVLYSNLGPEDASVVVKALQSDKVAYRITDNGATIMVPQEVVYDQRIKIAGEG 103 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 G+E+FDKV G T F+Q+I RAL+GE+ARTI + +ARVH+V+P Sbjct: 104 -GLVGQGIGFEIFDKVK-VGQTDFVQKINYTRALQGELARTISEFPSVESARVHLVIPRR 161 Query: 162 GSFRKIGARPTASVMIRAINPSV---YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV+++ I P++ K AI +++ +V LD G V++ D++GK+L Sbjct: 162 SLFVEERQSPSASVVLKLIRPNIKVDQKEINAILNMMLMSVEGLDRGHVSITDTSGKVLY 221 Query: 219 ANEMER--NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 E + I + Q +Q +E I + L G + V A+++ + IR Sbjct: 222 QPEEDSLAGITTTQMEYRQTVQRNLERRIEEMLQPLFGPGRVIAKVNADMDFSQKTIRRE 281 Query: 277 VYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEE-- 334 ++DP+ RS RSE SQ + +E P V+ R + S+ + E Sbjct: 282 LFDPERTAVRS------EYRSEESQ-QGRANLEAGSPDVNFRGDGITGSVSDQSGTREAR 334 Query: 335 QSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSA 394 +NYEIN + + +L RL++AV+++ G + G + L ++ ++V Sbjct: 335 TTNYEINKEEQQIVSNVGELRRLTVAVLID-GTYVKADGAWTFMPRKSEELEQVRQLVHN 393 Query: 395 ATGINSRRGDTITITSMDFLENQ 417 A G+++ RGD + ++S F +++ Sbjct: 394 AVGLDTGRGDALEVSSAPFTDSE 416 >gi|293395603|ref|ZP_06639886.1| flagellar M-ring protein [Serratia odorifera DSM 4582] gi|291421922|gb|EFE95168.1| flagellar M-ring protein [Serratia odorifera DSM 4582] Length = 573 Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 122/423 (28%), Positives = 206/423 (48%), Gaps = 56/423 (13%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + SP Y LY L D I L++ NI +R ++NG+++ +P+ V + R+ LA Q Sbjct: 46 LWAKSPDYRVLYSNLNDRDGGAIVTQLTQMNIPYRFAENGAALMIPAEKVHETRLRLAQQ 105 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F ++I RALEGE++RTI+S+ + ARVH+ +P Sbjct: 106 GLPKGGA-VGFELLDQ-EKFGISQFSEQINYQRALEGELSRTIESLGPVQNARVHLALPK 163 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + P+ASV + RA++ AI ++VA++V L G+VTV+D G+ Sbjct: 164 PSLFVREQKSPSASVTLNLQPGRALDDG---QINAIVYMVASSVAGLPPGNVTVVDQAGR 220 Query: 216 LLTANEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT ++ R++ L +++ + I LA +G N R+ V A+++ ++ Sbjct: 221 LLTQSDGSGRDLNASQLKYTSEVENRYQRRIEAILAPIVGSANVRAQVTAQIDFSIREQT 280 Query: 275 EIVYDPDSKVE----RSIRLSKDAQ----------RSETSQPESAVTVEQNMP------- 313 + Y P+ E RS +LS+ Q + ++QP +A T P Sbjct: 281 DEQYQPNPTPEKAAIRSRQLSQSDQLGGQPVGGVPGALSNQPSAAPTAPIETPAADATAN 340 Query: 314 --HVSDRKVPLPRSLENT-------------DKKEEQSNYEINTKSIATTHDNYKLERLS 358 ++ P R NT +++E +NYE++ T H + ++RLS Sbjct: 341 TNTTANNAPPAARQTSNTATGNGNGNGQPQNSRRDETTNYEVDRTIRHTQHKSGAVQRLS 400 Query: 359 IAVVVNKGRLTEVLGRSADQGKI---DSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 +AVV+N LG D + L +I +V A G + RGDT+ + + F E Sbjct: 401 VAVVLN------TLGSDKDGKPLPMSKQQLTQIESLVREAMGYSGTRGDTLNVVNSPFTE 454 Query: 416 NQL 418 ++ Sbjct: 455 TEM 457 >gi|313200543|ref|YP_004039201.1| flagellar m-ring protein flif [Methylovorus sp. MP688] gi|312439859|gb|ADQ83965.1| flagellar M-ring protein FliF [Methylovorus sp. MP688] Length = 580 Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 118/414 (28%), Positives = 200/414 (48%), Gaps = 40/414 (9%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y L+ D I +L + NI ++ S++G++I VP+S V + R+ LAAQ Sbjct: 50 LWSQQPEYRVLFSNYADKDGGAIVASLEQMNIPYKFSESGTAILVPASQVHQVRLKLAAQ 109 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP N G+EL + FG++ F++++ R LEGE+ R+IQ+IS + AR+H+ +P Sbjct: 110 GLPKGG-NIGFELLEN-QKFGVSQFVEQVNFQRGLEGELERSIQTISAVEVARIHLAIPK 167 Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + +PTASV++ + P + AI HLVA++VP L + +VTV+D G LL Sbjct: 168 PSVFVRDQQKPTASVLLN-LRPGRMLDQQQVSAIVHLVASSVPELPIANVTVVDQNGNLL 226 Query: 218 --TANEMERNILGKS-LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 T + RN L + L + +Q I + +A +G N + AE++ TQ+ Sbjct: 227 SDTDKKAGRNNLDPTQLKYIDELQQNIVRRVESIIAPMVGAKNVHAEASAEVDFSTQEQA 286 Query: 275 EIVYDPDSKVER-SIRLSKDAQRSETS-------------QPESAVTVEQNMPHVSDRKV 320 Y P+ + S+R + + TS QP + T N ++ Sbjct: 287 AETYRPNQAPDAMSVRSQQSNESQSTSPAGVGGVPGALSNQPPAPATAPLNTAVPANAGA 346 Query: 321 PLPRSLE----------------NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 P + NT +K +NYE++ ++RL++AVVVN Sbjct: 347 PGAGTPANAAAANAANATPAVPVNT-QKNVTTNYELDKTIRYVQQPMGGVKRLTVAVVVN 405 Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 ++ + G+ ++ D+ EI+ + A G N RGD++T+ + F +Q+ Sbjct: 406 HKQVVDKNGKVTNRPLTDAEKTEISDLAKQAMGFNQERGDSLTVVNSSFAGDQI 459 >gi|303326607|ref|ZP_07357049.1| flagellar M-ring protein FliF [Desulfovibrio sp. 3_1_syn3] gi|302862595|gb|EFL85527.1| flagellar M-ring protein FliF [Desulfovibrio sp. 3_1_syn3] Length = 548 Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 116/384 (30%), Positives = 198/384 (51%), Gaps = 19/384 (4%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 +V P Y LY L D + + AL I ++++DNG++I VP +V RI +A +G Sbjct: 44 WVGRPEYRVLYSNLGAEDASHVVKALQTDKIPYQLADNGATIMVPKEVVYDQRIKIAGEG 103 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 G+E+FDKV G T F+Q+I RAL+GE++RTI + +ARVH+V+P Sbjct: 104 -GLVGQGIGFEIFDKVK-VGQTDFVQKINYTRALQGELSRTISEFPSVESARVHLVIPQR 161 Query: 162 GSFRKIGARPTASVMIRAINPSV---YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV+++ NP+ K AI +++ AV LD G V++ D+ GK+L Sbjct: 162 SLFVEERQSPSASVVLKLTNPNSKPDQKEISAILNMMLMAVEGLDKGHVSITDNGGKVLY 221 Query: 219 ANEMERNILGKSLSIVQ---AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 E E ++ G S + ++ +Q +E I + L G + V A+++ + IR Sbjct: 222 QPE-EDSLAGASSTQMEHRLQVQRNLERRIEEMLQPLFGPGRVIAKVNADMDFSQKTIRR 280 Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSL--ENTDKKE 333 +DP+ RS QRSE SQ + +E P + R + S+ +N ++ Sbjct: 281 EFFDPEKTAVRS------EQRSEESQ-QGRANLEAGAPDTNFRGDGITGSVSDQNGTRET 333 Query: 334 EQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVS 393 +NYEIN + + L RL++AV+++ G + G+ + + L + ++VS Sbjct: 334 RTTNYEINKEEQQIVANVGDLRRLTVAVIID-GTYEKADGKWSFVPRKAEELDRVRQLVS 392 Query: 394 AATGINSRRGDTITITSMDFLENQ 417 A G++ RGD + ++S F +++ Sbjct: 393 NAVGLDKGRGDLLEVSSAPFTDSE 416 >gi|152980320|ref|YP_001353131.1| flagellar MS-ring protein [Janthinobacterium sp. Marseille] gi|151280397|gb|ABR88807.1| flagellar basal-body M-ring protein [Janthinobacterium sp. Marseille] Length = 585 Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 123/439 (28%), Positives = 203/439 (46%), Gaps = 50/439 (11%) Query: 18 GRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS 77 GR +L+L S ++ IM+ + + P Y L+ D I +L +N+ ++ + Sbjct: 38 GRKVMLMLGSAAVIAIMIALV--LWSQKPEYKVLFSNFSDRDGGAIMSSLQASNVPYKFA 95 Query: 78 DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137 + G +I VP+ V + R+ LAA+GLP G+EL + G++ F++++ RALEG Sbjct: 96 EGGGAILVPADKVHEIRLKLAAEGLPKGGG-VGFELMEN-QKLGVSQFLEQVNFQRALEG 153 Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIR 192 E+AR+IQS+ + AARVH+ MP F + +PTASV++ RA++ + AI Sbjct: 154 ELARSIQSVGAVQAARVHLAMPKASVFVRDQQKPTASVLLNLRQGRALD---QQQVSAIV 210 Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLL--TANEMERNILGKS-LSIVQAIQHEIEMNINKAL 249 HLVA++VP L +VT++D +G LL T N L S L VQ +Q I I + Sbjct: 211 HLVASSVPELSPKNVTIVDQSGNLLSETNKPAGSNTLDPSQLKYVQELQQSITKRIESII 270 Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYD----PDSKVERSIRLSKDAQRSE------- 298 +G N R+ A+++ T + +Y P+S RS++ S+ Sbjct: 271 TPIVGASNIRAEATADVDFSTSEQAAEIYKPNQVPNSATVRSLQTSESRGNGTGASGVPG 330 Query: 299 --TSQPESAVTVEQNMPHVSDRKVP----------------------LPRSLENTDKKEE 334 T+QP T P ++ P + +K+ Sbjct: 331 ALTNQPAPNATAPLTAPPLAADGTPSTATNPPAPGTPAAAAAAAAAATAAANATPTQKDT 390 Query: 335 QSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSA 394 +N+E++ L+RLS+AVVVN R+ G+ ++ +I +V Sbjct: 391 TTNFEVDKTVRYVQQPMGGLKRLSVAVVVNYKRVVAKDGKVTIAPLSETEKNQITDLVKE 450 Query: 395 ATGINSRRGDTITITSMDF 413 A G N RGDT+ + + F Sbjct: 451 AMGYNKDRGDTLNVVNSPF 469 >gi|307822872|ref|ZP_07653103.1| flagellar M-ring protein FliF [Methylobacter tundripaludum SV96] gi|307736476|gb|EFO07322.1| flagellar M-ring protein FliF [Methylobacter tundripaludum SV96] Length = 611 Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 136/487 (27%), Positives = 228/487 (46%), Gaps = 62/487 (12%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 +G ++ R L+L + + + + +A + P Y LY ++ SDV+ I L++ NI Sbjct: 48 AGLTIARQIGLMLG--LALSVAIGVAIVLWSQEPSYGRLYSEIGESDVSEILEILNKENI 105 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 +++ +I VP V ++ LAAQGLP S+S GYEL DK FG + ++ + Sbjct: 106 KYKVETGSGAIMVPMDQVSAVKLKLAAQGLPKSNS-LGYELLDKEQGFGASKGVETVRFQ 164 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKS 187 RALEGEIARTI SI + ARV + +P F + +P+ASV++ R+++ Sbjct: 165 RALEGEIARTIMSIQNVKTARVLLAIPAQSVFVRERKKPSASVIVNLYQGRSLDKG---Q 221 Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIEMNI 245 E+I HLVA++VP L+ VTV+D G+LL +N+ + N+ K + I+ + I Sbjct: 222 VESIIHLVASSVPQLEAEQVTVVDQKGQLLNSNDSSVAGNLTSKQFEYKKNIEEHLMGRI 281 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305 L+ +G D R + A+++ + +++PD RS +TS+ +S Sbjct: 282 ENILSPLVGSDGMRVQISADVDFTETDRTQEMFNPDLPALRS---------EQTSEEQST 332 Query: 306 VTVEQNMPHVSDRK--------------------------VPLPRSLENTDKKEEQSNYE 339 + Q +P + P + + K NYE Sbjct: 333 QSAIQGVPGALSNQPTPAGAAPDPAAAPAAPGSSATTAAAAPTSTATPGSAAKNATRNYE 392 Query: 340 INTKSIATTHDNYKLERLSIAVVVNKGRLTE----VLGRSADQGKIDSYLAEINKIVSAA 395 ++ T L RLS+AVVV+ + + V G+S Q I+ + + +V A Sbjct: 393 LDKTITHTRLATGALRRLSVAVVVDDRHVPQSDGTVKGQSYSQEDINRF----SDLVKQA 448 Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTV-----QVSFMDILSRHFATVINALVFLVGTL 450 G +S RGD +T+T++ F ++L + Q F+D++ + A V+ L L G L Sbjct: 449 VGFDSSRGDQVTVTNVTFKIDELIEALPAIPVWEQGWFLDLM-KQVAAVLAVLFLLFGVL 507 Query: 451 LVTFLGL 457 T L Sbjct: 508 RPTMRSL 514 >gi|62180544|ref|YP_216961.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62128177|gb|AAX65880.1| flagellar biosynthesis; basal-body MS(membrane and supramembrane)-ring and collar protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322715020|gb|EFZ06591.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 560 Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 128/430 (29%), Positives = 209/430 (48%), Gaps = 52/430 (12%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 44 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 103 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 104 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 161 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + P+ASV + RA++ A+ HLV++AV L +G+VT++D +G Sbjct: 162 PSLFVREQKSPSASVTVTLEPGRALDEG---QISAVVHLVSSAVAGLPLGNVTLVDQSGH 218 Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT +N R++ L ++ I+ I L+ +G N + V A+L+ ++ Sbjct: 219 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 278 Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309 E Y P+ ++ S+ SE ++QP E+ + Sbjct: 279 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 338 Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369 QN P S NT ++ E SNYE++ T + +ERLS+AVVVN L Sbjct: 339 QNTPQTSTSTNSNSAGPRNT-QRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLA 397 Query: 370 E--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG----- 422 + L +ADQ K +I + A G + +RGDT+ + + F + + N+G Sbjct: 398 DGKPLPLTADQMK------QIEDLTREAMGFSDKRGDTLNVVNSPF--SAVDNTGGELPF 449 Query: 423 TVQVSFMDIL 432 Q SF+D L Sbjct: 450 WQQQSFIDQL 459 >gi|78224304|ref|YP_386051.1| flagellar FliF M-ring protein [Geobacter metallireducens GS-15] gi|78195559|gb|ABB33326.1| Flagellar FliF M-ring protein [Geobacter metallireducens GS-15] Length = 527 Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 125/428 (29%), Positives = 206/428 (48%), Gaps = 34/428 (7%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L +LL+ F +L + I+ V+ V I+ F N Y L+ L D I Sbjct: 5 LKKLLEPF---MALPPAKRWIVGGVVGVSIIAFALLIMVANRTDYRPLFTNLTTEDAGEI 61 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L E + +RI+ +G +I VPS V R+ +A+ GLP G+E+FD+ N FG+T Sbjct: 62 VTKLKEQKVPYRIAADGKAILVPSDKVYDLRLTMASAGLPQGGG-VGFEIFDRKN-FGMT 119 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----R 178 F+Q++ RAL+GE++RTI I+G+ ARVH+ +P+ F++ TASV++ R Sbjct: 120 EFVQKLNYQRALQGELSRTIGQIAGVEQARVHLAIPEKALFKEDEKPATASVVLKVKGNR 179 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQ 238 +N S + + HLVA+++ ++ VTVLD GKLL+ N + GK + +Q +Q Sbjct: 180 QLNDS---DVQGVVHLVASSIEGMNPEHVTVLDQKGKLLSKN-GPTDAAGKMTASMQEVQ 235 Query: 239 HEIEMNINKALAAFL--GVDNFRSAVVAELNMDTQQIR--EIVYDPDSKVERSIRLSKDA 294 E + L + L V + +S D +Q+ E YDP++ V + Sbjct: 236 RTYERGTEERLQSLLDKAVGSGKSVARVSAVFDFRQVERYEEKYDPETVV-------RSE 288 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPL---PRSLENTDKKEEQSNYEINTKSIATTHDN 351 QRSE S + T + + P + N K +E NYE++ + T Sbjct: 289 QRSEESMGGANATAGVPGAQTNLGRTPAGAGGATGPNGSKNDETLNYEVSRSTARTIEPV 348 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKID------SYLAEINKIVSAATGINSRRGDT 405 L ++S+A++V+ +G+ K + L +I +V A G N+ RGD Sbjct: 349 GALSKVSVAILVDGKYDAPAVGKDGKNAKPKYTPRSPAELQQIEALVKGAVGFNAVRGDQ 408 Query: 406 ITITSMDF 413 +T+ ++ F Sbjct: 409 VTVANIPF 416 >gi|253998468|ref|YP_003050531.1| flagellar M-ring protein FliF [Methylovorus sp. SIP3-4] gi|253985147|gb|ACT50004.1| flagellar M-ring protein FliF [Methylovorus sp. SIP3-4] Length = 576 Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 118/414 (28%), Positives = 199/414 (48%), Gaps = 40/414 (9%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y L+ D I +L + NI ++ S++G++I VP+S V + R+ LAAQ Sbjct: 46 LWSQQPEYRVLFSNYADKDGGAIVASLEQMNIPYKFSESGTAILVPASQVHQVRLKLAAQ 105 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP N G+EL + FG++ F++++ R LEGE+ R+IQ+IS + AR+H+ +P Sbjct: 106 GLPKGG-NIGFELLEN-QKFGVSQFVEQVNFQRGLEGELERSIQTISAVEVARIHLAIPK 163 Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + +PTASV++ + P + AI HLVA++VP L + +VTV+D G LL Sbjct: 164 PSVFVRDQQKPTASVLLN-LRPGRMLDQQQVSAIVHLVASSVPELPIANVTVVDQNGNLL 222 Query: 218 --TANEMERNILGKS-LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 T + RN L + L + +Q I + +A +G N + AE++ TQ+ Sbjct: 223 SDTDKKAGRNNLDPTQLKYIDELQQNIVRRVESIIAPMVGAKNVHAEASAEVDFSTQEQA 282 Query: 275 EIVYDPDSKVER-SIRLSKDAQRSETS-------------QPESAVTVEQNMPHVSDRKV 320 Y P+ + S+R + + TS QP + T N ++ Sbjct: 283 AETYRPNQAPDAMSVRSQQSNESQSTSPAGVGGVPGALSNQPPAPATAPLNTAVPANAGA 342 Query: 321 PLPRSLE----------------NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 P + NT +K +NYE++ ++RL++AVVVN Sbjct: 343 PGAGTPANAAAANAANATPAVPVNT-QKNVTTNYELDKTIRYVQQPMGGVKRLTVAVVVN 401 Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 ++ + G+ ++ D+ EI+ + A G N RGD++T+ + F Q+ Sbjct: 402 HKQVVDKNGKVTNRPLTDAEKTEISDLAKQAMGFNQERGDSLTVVNSSFAGEQI 455 >gi|148253400|ref|YP_001237985.1| flagellar MS-ring protein [Bradyrhizobium sp. BTAi1] gi|146405573|gb|ABQ34079.1| Flagellar basal body M-ring protein [Bradyrhizobium sp. BTAi1] Length = 535 Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 119/410 (29%), Positives = 201/410 (49%), Gaps = 12/410 (2%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 LL F K LG R+ + +V I F V +P L+ L + D + I Sbjct: 4 LLDFLKG---LGAARLTAMIAVTAALIGFFGFVIMRVTAPQMTTLFTDLGMDDSSSIIKD 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L I F I + GS I VP V + R+ LA +G GYE+FDK ++ G TSF+ Sbjct: 61 LERQGIPFEIRNEGSVILVPKDKVTRLRMKLA-EGGLPKGGGVGYEIFDKSDALGTTSFV 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 Q I +RALEGE+ARTI++I I AARVH+V+P+ F + P+AS+++R Sbjct: 120 QNINHLRALEGELARTIRAIDRIQAARVHLVLPERPLFSRETPEPSASIVVRVRGALDAA 179 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQAIQHEIEM 243 AIRHLVA+AV L V+++D G+LL T ++++ + + + + + Sbjct: 180 QIRAIRHLVASAVNGLKPQRVSIVDEAGQLLADGTQTDIDQQVGDERRN---TFEKRMRK 236 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 + +++ +G R + A+ + + YDP+ +V RS + + ++S +S+ Sbjct: 237 QVEDIVSSVVGAGRARVQLSADFDFNRITQTSDRYDPEGRVLRSSQTRE--EQSASSESN 294 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 VTV +P + + + K EE +NYEI+ + + ++ R+S+AV+V Sbjct: 295 GQVTVNNELPGNQQNQQQQQPPRDQSKKTEETNNYEISRTTKTEVTEAGRVNRISVAVLV 354 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 + G + + L I +V +A G + +RGD + + ++ F Sbjct: 355 DGAYSKNEKGELVYKERSKEELDRIAALVRSAIGFDQKRGDQVEVVNLKF 404 >gi|212709512|ref|ZP_03317640.1| hypothetical protein PROVALCAL_00554 [Providencia alcalifaciens DSM 30120] gi|212687850|gb|EEB47378.1| hypothetical protein PROVALCAL_00554 [Providencia alcalifaciens DSM 30120] Length = 563 Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 125/416 (30%), Positives = 206/416 (49%), Gaps = 36/416 (8%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + SP Y L L D I L++ N+ ++I+DNGS+I VP+ V + R+ LA Sbjct: 46 LWFRSPDYRVLLSNLSAKDGGDIVSQLTQMNVPYQIADNGSAILVPADKVHELRLKLAQS 105 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP N+G+EL DK FG++ F ++I RALEGE++RTI+S+S + +ARVH+ +P Sbjct: 106 GLPKGG-NTGFELLDK-EKFGISQFSEQINYQRALEGELSRTIESLSPVQSARVHLAIPK 163 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + PTASV + + + + AI H+V+++V L +V ++D TG+LLT Sbjct: 164 PTLFVREQKLPTASVTVGLLPGRMLDEGQISAIVHMVSSSVTGLTAANVIIVDQTGRLLT 223 Query: 219 ANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 N+ +++ + + + ++ ++ I L+ +G N + V A+++ + Sbjct: 224 NNDNSQQSANSAQIKMTKEMEAHLKERIEDILSPLVGRANIHAQVTAQMDFSKVEQTSEE 283 Query: 278 YD----PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK- 332 Y PD+ RS R S ++ ++ P N P VS P+ + ENTD K Sbjct: 284 YKPNQTPDAAAVRS-RQSSESLQNSNGGPSGVPGALSNQP-VSAPSAPIDGNKENTDGKT 341 Query: 333 -------------EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQG 379 +E +NYE++ K T ++RLS+AV+VN G + Sbjct: 342 AGNTRNGTLNTQRDETTNYEVDRKISHTQRQIGVVDRLSVAVIVN---YQSQEGEKGPEM 398 Query: 380 K--IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433 K L +I+ + A G +++RGD+I IT N LF T + +LS Sbjct: 399 KPLPPEMLQQIDALTREAMGYSAQRGDSINIT------NSLFTDDTPVIEEPSLLS 448 >gi|152990373|ref|YP_001356095.1| flagellar M-ring protein FliF [Nitratiruptor sp. SB155-2] gi|151422234|dbj|BAF69738.1| flagellar M-ring protein FliF [Nitratiruptor sp. SB155-2] Length = 542 Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 115/387 (29%), Positives = 203/387 (52%), Gaps = 20/387 (5%) Query: 43 VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL 102 +++ Y LY L D I L E I +++ NG I VP + R+ LAA+GL Sbjct: 46 ISAEKYGVLYANLTADDAGNILTVLQEEKIPYKVEGNGKIILVPKDKIYDVRLKLAAKGL 105 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162 P S N G+E+FD+ G+T F + I +RALEGE+ARTI+ I + ARV+I +P Sbjct: 106 PRSQ-NVGFEIFDE-PKMGITHFQENINYIRALEGELARTIKKIDAVQDARVNIALPKDS 163 Query: 163 SFRKIGARPTASVMIRAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLLT- 218 F + ASV+I +++P + + E AI LV+ AVP L +VTV+D++G++L+ Sbjct: 164 IFAREEDEAKASVII-SLHPGMSLTKEQVKAIVFLVSHAVPKLKSQNVTVVDNSGRVLSD 222 Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI--RE 275 E E + + + + + +IE ++ LA LG + V A + ++T +I R+ Sbjct: 223 MLEENEEKEVHDVVDLKRKFRRDIEKSVESMLARALGAQ--KVVVRANVEIETAKIDKRD 280 Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ 335 +YDPD S R ++ +S QP + N+P + P L++ KK+ Sbjct: 281 EIYDPDKTAVVSERKIQEKSKSIPQQPIGSPGTPTNVPATINTG-PNGTVLQDKSKKDIT 339 Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ-----GKIDSYLAEINK 390 +NY++ I T + +K++++++ V+++ G+ + + ++ + + L Sbjct: 340 TNYDVTKSLIVTKQNVFKIKKITVGVLID-GKYIKKMDKNGTMQVEFVPRSEQELKSFEN 398 Query: 391 IVSAATGINSRRGDTITITSMDFLENQ 417 ++ +A G + +RGD +T+ S+ F ENQ Sbjct: 399 LIKSAIGYDPKRGDQVTVVSVPF-ENQ 424 >gi|304398855|ref|ZP_07380725.1| flagellar M-ring protein FliF [Pantoea sp. aB] gi|304353559|gb|EFM17936.1| flagellar M-ring protein FliF [Pantoea sp. aB] Length = 575 Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 135/454 (29%), Positives = 213/454 (46%), Gaps = 61/454 (13%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y LY L D I L++ NI +R ++NG ++ VP + V + R+ LA Q Sbjct: 47 LWAKQPSYSVLYNNLTDEDGGAIVTQLTQMNIPYRFAENGGALMVPEANVHELRLRLAQQ 106 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S G+EL DK FG++ F +++ RALEGE+ARTI+S+ + +ARVH+ MP Sbjct: 107 GLPKGGS-VGFELLDK-EKFGISQFSEQVNYQRALEGELARTIESLGPVKSARVHLAMPK 164 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + P+ASV + RA++ +AI H+V+++V L G+VTV+D TG+ Sbjct: 165 PTLFVREQKAPSASVTLTLQPGRALDEG---QIQAIAHMVSSSVAGLPPGNVTVVDQTGR 221 Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT ++ R++ L ++ + I L LG N + V A++N DT + Sbjct: 222 LLTRSDSAGRDLNDAQLKYSSEVEARYQQRIEAILNPILGQGNVHAQVTAQINFDTAEQT 281 Query: 275 EIVYDPDSKVERSIRLSKDAQRSETS--------------QPESAVTVEQNMP------- 313 + Y P++ S S+ S+ S QP A T P Sbjct: 282 DEKYQPNANPSNSAIRSRQTSTSDQSGSPYPGGVPGALSNQPAPANTAPVTTPNNNAANG 341 Query: 314 -----------HVSDRKVPLPRSLENTD-KKEEQSNYEINTKSIATTHDNY-KLERLSIA 360 + S P S T+ ++++ NYE++ ++I T N ++RLS+A Sbjct: 342 QAANGQNNAANNASQTTSTAPASSGPTNSRRDDTVNYELD-RTIRHTKVNVGDVQRLSVA 400 Query: 361 VVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 VVVN R+ D+GK + L +I + A G + RGD+I + + F Sbjct: 401 VVVN--------FRADDKGKAVALNEQQLKQIEDLTREAMGYSQSRGDSINVVNSQFNTT 452 Query: 417 QLFNSG---TVQVSFMDILSRHFATVINALVFLV 447 + + Q SF D L ++ ALV V Sbjct: 453 EPVTTDLPFWQQQSFFDQLMDAGKWLLVALVAFV 486 >gi|322655518|gb|EFY51826.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322683020|gb|EFY79036.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|323204454|gb|EFZ89460.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] Length = 531 Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 129/438 (29%), Positives = 212/438 (48%), Gaps = 52/438 (11%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92 + + +A + +P Y L+ L D I L++ NI +R ++ +I VP+ V + Sbjct: 7 VAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHE 66 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +A Sbjct: 67 LRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSA 124 Query: 153 RVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDV 207 RVH+ MP F + P+ASV + RA++ A+ HLV++AV L G+V Sbjct: 125 RVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEG---QISAVVHLVSSAVAGLPPGNV 181 Query: 208 TVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAEL 266 T++D +G LLT +N R++ L ++ I+ I L+ +G N + V A+L Sbjct: 182 TLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQL 241 Query: 267 NMDTQQIREIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTV 308 + ++ E Y P+ ++ S+ SE ++QP E+ + Sbjct: 242 DFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIAT 301 Query: 309 E-------QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 QN P S NT ++ E SNYE++ T + +ERLS+AV Sbjct: 302 PPTNQQNAQNTPQTSTSTNSNSAGPRNT-QRNETSNYEVDRTIRHTKMNVGDIERLSVAV 360 Query: 362 VVNKGRLTE--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 VVN L + L +ADQ K +I + A G + +RGDT+ + + F + + Sbjct: 361 VVNYKTLADGKPLPLTADQMK------QIEDLTREAMGFSDKRGDTLNVVNSPF--SAVD 412 Query: 420 NSG-----TVQVSFMDIL 432 N+G Q SF+D L Sbjct: 413 NTGGELPFWQQQSFIDQL 430 >gi|222112250|ref|YP_002554514.1| flagellar m-ring protein flif [Acidovorax ebreus TPSY] gi|221731694|gb|ACM34514.1| flagellar M-ring protein FliF [Acidovorax ebreus TPSY] Length = 564 Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 116/398 (29%), Positives = 197/398 (49%), Gaps = 28/398 (7%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 F+ P Y L+ L D I LS+ N+ ++ ++ G +I VP+ V R+ LA Q Sbjct: 50 FYSRQPDYRVLFSGLNDKDGGAIVAQLSQMNVPYKYTEGGGAILVPAERVHDVRLRLATQ 109 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S +G+EL + N FG+T F + + R LEGE+ R+IQ+++ + +ARVH+ +P Sbjct: 110 GLPKGSV-TGFELME-TNRFGVTQFQERLNFQRGLEGELTRSIQALASVQSARVHLALPQ 167 Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + +P+ASV++ ++ P + I HLVA++VP L V+VLD TGKLL Sbjct: 168 QNGFFREQQKPSASVLL-SLYPGRFLDRAQLAGIVHLVASSVPELAPSAVSVLDDTGKLL 226 Query: 218 --TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD----TQ 271 T + + + L+ VQ I+ + I L +G +N ++ V AE++ + T Sbjct: 227 SQTPDMAGAGVDAQQLAYVQQIEQQYARRILDLLEPVVGKNNVKAQVTAEVDFNQTESTV 286 Query: 272 QIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV--TVEQNMPHVSDRKV----PLP-- 323 + + PD+ RS ++ + + +QP + V V P S + P P Sbjct: 287 EQHKPNLAPDASAVRSQQVVESG-GTPGAQPPTGVPGAVTNQPPQASAAPINGANPAPTA 345 Query: 324 ------RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA- 376 K+E +NYE++ + T ++R++ AVVVN ++E G+ A Sbjct: 346 AGGAPGSGAAGQAKRESITNYEVDKTTQVTRGGAGAIKRVNAAVVVNYQPVSEGPGKPAV 405 Query: 377 DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 ++ L ++ +V G N RGD++ + + FL Sbjct: 406 NKALTPEQLEQMTALVRETIGFNKERGDSVNLMNAPFL 443 >gi|121596094|ref|YP_987990.1| flagellar M-ring protein FliF [Acidovorax sp. JS42] gi|120608174|gb|ABM43914.1| flagellar M-ring protein FliF [Acidovorax sp. JS42] Length = 564 Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 116/398 (29%), Positives = 197/398 (49%), Gaps = 28/398 (7%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 F+ P Y L+ L D I LS+ N+ ++ ++ G +I VP+ V R+ LA Q Sbjct: 50 FYSRQPDYRVLFSGLNDKDGGAIVAQLSQMNVPYKYTEGGGAILVPAERVHDVRLRLATQ 109 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S +G+EL + N FG+T F + + R LEGE+ R+IQ+++ + +ARVH+ +P Sbjct: 110 GLPKGSV-TGFELME-TNRFGVTQFQERLNFQRGLEGELTRSIQALASVQSARVHLALPQ 167 Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + +P+ASV++ ++ P + I HLVA++VP L V+VLD TGKLL Sbjct: 168 QNGFFREQQKPSASVLL-SLYPGRFLDRAQLAGIVHLVASSVPELAPSAVSVLDDTGKLL 226 Query: 218 --TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD----TQ 271 T + + + L+ VQ I+ + I L +G +N ++ V AE++ + T Sbjct: 227 SQTPDMAGAGVDAQQLAYVQQIEQQYARRILDLLEPVVGKNNVKAQVTAEVDFNQTESTV 286 Query: 272 QIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV--TVEQNMPHVSDRKV----PLP-- 323 + + PD+ RS ++ + + +QP + V V P S + P P Sbjct: 287 EQHKPNLAPDASAVRSQQVVESG-GTPGAQPPTGVPGAVTNQPPQASAAPINGANPAPTA 345 Query: 324 ------RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA- 376 K+E +NYE++ + T ++R++ AVVVN ++E G+ A Sbjct: 346 AGGAPGSGAAGQAKRESITNYEVDKTTQVTRGGAGAIKRVNAAVVVNYQPVSEGPGKPAV 405 Query: 377 DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 ++ L ++ +V G N RGD++ + + FL Sbjct: 406 NKALTPEQLEQMTALVRETIGFNKERGDSVNLMNAPFL 443 >gi|253702508|ref|YP_003023697.1| flagellar M-ring protein FliF [Geobacter sp. M21] gi|251777358|gb|ACT19939.1| flagellar M-ring protein FliF [Geobacter sp. M21] Length = 522 Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 124/425 (29%), Positives = 205/425 (48%), Gaps = 31/425 (7%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L +LL+ F +L + L++ V L ++ F A N Y L+ L D I Sbjct: 5 LKKLLEPF---LALSSAKRLVVGGVALASLLGFAALIAVANKTDYRPLFANLTQEDAGEI 61 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L E + ++IS +G +I VPS V R+ LA+ GLP G+E+FD+ N FG+T Sbjct: 62 VKKLKEQKVPYQISPDGKAILVPSDNVYDLRLSLASDGLPQGG-GIGFEIFDRKN-FGMT 119 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 F+Q++ RAL+GE+ RTI I+G+ +ARVH+ +P+ F++ TASV+I+ + Sbjct: 120 EFVQKLNYQRALQGELGRTIAQIAGVESARVHLALPEKALFQEQEKPATASVVIKMKSNR 179 Query: 184 VYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQAIQ 238 + E + HLVA+++ +D VTVLD+ GK+L ++N+ + G +A + Sbjct: 180 QLREGEVQGVVHLVASSIEGMDPEQVTVLDTRGKVLSSHSSNDPTSKLAGARQDTQRAFE 239 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 E + L +G + V A + + E YDP+S RS QRSE Sbjct: 240 KTEEEKLQSLLDRVVGSGKSVARVSASFDFKQVEKYEERYDPESAAVRS------EQRSE 293 Query: 299 -----TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 ++ A V+ NM R + K +E NYE++ + Sbjct: 294 EKGGISTTASGAPGVQTNM----GRAQGAAGTTGGGSKTDETLNYEVSRSTARIVEPVGS 349 Query: 354 LERLSIAVVVNKGRLTEVLGRSAD-----QGKIDSYLAEINKIVSAATGINSRRGDTITI 408 L ++S+A++V+ G+ G D Q + + +I +V +A G N+ RGD +T+ Sbjct: 350 LSKVSVAILVD-GKYELAPGAKPDAAPKYQPRSPDEMQKIEALVKSAVGFNAERGDQVTV 408 Query: 409 TSMDF 413 ++ F Sbjct: 409 ANIPF 413 >gi|146342729|ref|YP_001207777.1| flagellar MS-ring protein [Bradyrhizobium sp. ORS278] gi|146195535|emb|CAL79562.1| Flagellar basal body M-ring protein [Bradyrhizobium sp. ORS278] Length = 532 Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 129/462 (27%), Positives = 223/462 (48%), Gaps = 20/462 (4%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 LL F K LG R+ + +V + F V +P L+ L + D + I Sbjct: 4 LLDFLKG---LGAARLAAMVAVTAALVGFFGFVIMRVTAPQMTTLFTDLSMDDSSSIIKD 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L I F I + GS I VP V + R+ LA +G GYE+FDK ++ G TSF+ Sbjct: 61 LERQGIAFEIRNEGSVIMVPKDKVTRLRMKLA-EGGLPKGGGVGYEIFDKSDALGTTSFV 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 Q I +RALEGE+ARTI++I + AARVH+V+P+ F + P+AS+++R Sbjct: 120 QNINHLRALEGELARTIRAIDRVQAARVHLVLPERPLFSRETPEPSASIVVRVRGSLEAN 179 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQAIQHEIEM 243 AIRHLVA+AV L V+++D G+LL T ++++ + + + A + + Sbjct: 180 QIRAIRHLVASAVNGLKPQRVSIVDEAGQLLADGTQTDIDQQVGDERRN---AFEKRMRK 236 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 + +++ +G R + A+ + + YDP+ +V RS + + ++S TS+ Sbjct: 237 QVEDIVSSVVGSGRARVQLSADFDFNRITQTSDRYDPEGRVLRSSQTRE--EQSATSESN 294 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 VTV +P + + + K EE +NYEI+ + + ++ R+S+AV+V Sbjct: 295 GQVTVNNELPGNQQNQQGQQPK-DQSKKTEETNNYEISRTTKTEVTEAGRVNRISVAVLV 353 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 + G + + L I +V +A G + +RGD + + ++ F + + + Sbjct: 354 DGAYSKNEKGDLVYKERSKEELDRIAALVRSAIGFDQKRGDQVEVVNLKFADGPVVPQIS 413 Query: 424 VQVSFMDILSRHFAT-----VINALVFLVGTLLVTFLGLHAL 460 F+ +L HF VI V ++ ++V F+ + L Sbjct: 414 EPTGFLGML--HFTKDDVMYVIELAVMMLLGIVVVFMVVRPL 453 >gi|16765307|ref|NP_460922.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|120326|sp|P15928|FLIF_SALTY RecName: Full=Flagellar M-ring protein gi|154023|gb|AAA27096.1| fliF flagellar M-protein precursor [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16420504|gb|AAL20881.1| basal-body MS (membrane and supramembrane)-ring and collar protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|261247135|emb|CBG24958.1| flagellar basal-body M-ring protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993958|gb|ACY88843.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158483|emb|CBW17993.1| flagellar basal-body M-ring protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912959|dbj|BAJ36933.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|332988858|gb|AEF07841.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 560 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 129/433 (29%), Positives = 210/433 (48%), Gaps = 58/433 (13%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 44 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 103 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 104 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 161 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + P+ASV + RA++ A+ HLV++AV L G+VT++D +G Sbjct: 162 PSLFVREQKSPSASVTVTLEPGRALD---EGQISAVVHLVSSAVAGLPPGNVTLVDQSGH 218 Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT +N R++ L ++ I+ I L+ +G N + V A+L+ ++ Sbjct: 219 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 278 Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309 E Y P+ ++ S+ SE ++QP E+ + Sbjct: 279 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 338 Query: 310 QNMPHVS---DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 QN P S + PRS + + E SNYE++ T + +ERLS+AVVVN Sbjct: 339 QNTPQTSTSTNSNSAGPRSTQ----RNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYK 394 Query: 367 RLTE--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG-- 422 L + L +ADQ K +I + A G + +RGDT+ + + F + + N+G Sbjct: 395 TLADGKPLPLTADQMK------QIEDLTREAMGFSDKRGDTLNVVNSPF--SAVDNTGGE 446 Query: 423 ---TVQVSFMDIL 432 Q SF+D L Sbjct: 447 LPFWQQQSFIDQL 459 >gi|163738046|ref|ZP_02145462.1| flagellar M-ring protein FliF [Phaeobacter gallaeciensis BS107] gi|161388662|gb|EDQ13015.1| flagellar M-ring protein FliF [Phaeobacter gallaeciensis BS107] Length = 561 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 145/491 (29%), Positives = 238/491 (48%), Gaps = 31/491 (6%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 R R++ + + ++V I+ +A N+P LY LE + AL + ++ + Sbjct: 14 RKRLIAVGATVIV-ILSVLAMSRVANTPTMQLLYAGLESGSAGDVVRALEQRGTEYEV-- 70 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 G SI VP++ + R+ LA++GLP++ GYEL D ++ FG TS M + RA EGE Sbjct: 71 RGGSIYVPATARDELRMTLASEGLPANGGR-GYELLDSLSGFGTTSQMFDAAYWRAKEGE 129 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN-PSVYKSAEAIRHLVAA 197 +ARTI + + ARVHI F++ A PTASV + + P A AIR L+++ Sbjct: 130 LARTIVASPHVTQARVHIANTGSNPFQRT-AEPTASVSVVPMGSPITPAQANAIRFLISS 188 Query: 198 AVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDN 257 AV L + +V V+D+ G L+ + E + + Q+I+ + + + A +G N Sbjct: 189 AVTGLAVENVAVIDANGALIGSPEAAAAVGAGTDDRSQSIRE----RVMRLVEARVGHGN 244 Query: 258 FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA-VTVEQNMPHVS 316 V E DT+ IRE DP+S+V S + +R+++SQ +S VTV N+P Sbjct: 245 AVVEVSVETVTDTESIREKRIDPESRVAISTDVE---ERADSSQNQSGEVTVASNIPD-- 299 Query: 317 DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA 376 S +T E+ NYEI+ ++RL++AV++N +T G + Sbjct: 300 GDAASGDGSKASTSATRERVNYEISETEKEILRGPGAIKRLTVAVLLNGVPITTATGETV 359 Query: 377 DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF--LENQLFNSGT-VQVSFMDILS 433 + + + L + +++SAA G + RGD IT+ SM+ +E Q GT V S D + Sbjct: 360 MEPRSEEELGALRELISAAVGFSEERGDVITLKSMEMPTVEPQ----GTVVSASIFDNIY 415 Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRL--HNIDDAKKGEVGGKSILSPPPISSAVTT 491 ++I + TL+ LGL +R + + G GG ++ P + Sbjct: 416 LDAMSLIQMAALALVTLI---LGLFVIRPILSNQASVPALGAPGGDAMDELPALGGG--- 469 Query: 492 GLMPNDNIALD 502 G M N N+ D Sbjct: 470 GFMANPNLGAD 480 >gi|197285489|ref|YP_002151361.1| flagellar MS-ring protein [Proteus mirabilis HI4320] gi|194682976|emb|CAR43401.1| flagellar M-ring protein [Proteus mirabilis HI4320] Length = 573 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 142/551 (25%), Positives = 253/551 (45%), Gaps = 62/551 (11%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++ SP Y LY L D I L++ N+ +R+S NGS+I VP + V + R+ LA Sbjct: 46 LWLQSPDYKVLYSNLSDKDGGEIVTQLTQMNVPYRLSQNGSAIMVPDNQVHELRLKLAQA 105 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + +G+EL DK FG++ F ++I RALEGE+ARTI+++ + ARVH+ +P Sbjct: 106 GLPKGGA-AGFELLDK-EKFGISQFSEQINYQRALEGELARTIETLGPVQNARVHLALPK 163 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + + + AI H+VA++V + +VT++D +GKLLT Sbjct: 164 PSLFVREQKSPSASVTVGLLQGRALDEGQINAIVHIVASSVAGMPDSNVTIVDQSGKLLT 223 Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 + + R++ L VQ ++ + I L +G N + V A+++ + Sbjct: 224 QPDALGRDLNSIQLKYVQELESRYQQRIETLLGPIVGRGNVHAQVTAQVDFSHTEETAEE 283 Query: 278 YDPDSKVERSIRLSKDAQRSE--------------TSQP--ESAVTVEQNMPHVSDRKV- 320 Y P+ ++ SK +SE ++QP +E+ +D K Sbjct: 284 YKPNQPPNQAAVRSKQVSQSEQNGGMLAGGVPGALSNQPVAPPQAPIEKAKDTTADEKTT 343 Query: 321 ------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN------KGRL 368 + R+ + + +E +NYE++ + +ERLS+AV+VN K + Sbjct: 344 STNANRSMTRNPNSNSRLDETTNYEVDRRIRHVKRPVGNIERLSVAVIVNYKTVEDKKKA 403 Query: 369 TEVLGRSADQGKI---DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425 TE + ++ D L +I +V A G + RGD++++ N FN Sbjct: 404 TEGEEPIVENKQVPLTDEQLQQIESLVREAMGYSQERGDSLSVV------NSQFNDTEEP 457 Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL--HNIDDAKKGEVGG-KSILSP 482 V + + ++ + L LL+ + R+L ++ ++ EV K+IL Sbjct: 458 VISVPVWEN--PQILAKALDLGRWLLLVIIAWILWRKLVKPQLEKRREAEVAAQKAILK- 514 Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542 T L D++ + + D S + + R+++ + Q R+ M E + Sbjct: 515 --------TKLEVTDDV--NEAELDEESRRKQARQRVSAELQSQ---RIREMAEKDPRVV 561 Query: 543 AKILRKWARSE 553 A ++R+W E Sbjct: 562 AMVIRQWMSKE 572 >gi|205360218|ref|ZP_02681717.2| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205350665|gb|EDZ37296.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 579 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 129/433 (29%), Positives = 211/433 (48%), Gaps = 58/433 (13%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 63 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 122 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 123 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 180 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + P+ASV + RA++ A+ HLV++AV +L G+VT++D +G Sbjct: 181 PSLFVREQKSPSASVTVTLEPGRALD---EGQISAVVHLVSSAVASLPPGNVTLVDQSGH 237 Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT +N R++ L ++ I+ I L+ +G N + V A+L+ ++ Sbjct: 238 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 297 Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309 E Y P+ ++ S+ SE ++QP E+ + Sbjct: 298 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 357 Query: 310 QNMPHVS---DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 QN P S + PRS + + E SNYE++ T + +ERLS+AVVVN Sbjct: 358 QNTPQTSTSTNSNSAGPRSTQ----RNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYK 413 Query: 367 RLTE--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG-- 422 L + L +ADQ K +I + A G + +RGDT+ + + F + + N+G Sbjct: 414 TLADGKPLPLTADQMK------QIEDLTREAMGFSDKRGDTLNVVNSPF--SAVDNTGGE 465 Query: 423 ---TVQVSFMDIL 432 Q SF+D L Sbjct: 466 LPFWQQQSFIDQL 478 >gi|221636057|ref|YP_002523933.1| flagellar M-ring protein FliF [Thermomicrobium roseum DSM 5159] gi|221157932|gb|ACM07050.1| flagellar M-ring protein FliF [Thermomicrobium roseum DSM 5159] Length = 530 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 120/393 (30%), Positives = 196/393 (49%), Gaps = 27/393 (6%) Query: 48 YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 Y L+ L D I L + + +++S++G++ISVP V K R+ LAAQGLP S + Sbjct: 50 YAPLFTGLSADDAAAIIDQLRQQGVPYKLSNDGTTISVPVEQVAKLRLALAAQGLPKSGT 109 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 G+ELFD+ +SFG+T F Q + RALEGE+ARTI + G+ +ARVH+V+P+ F Sbjct: 110 -LGFELFDR-SSFGVTDFQQRVNYQRALEGELARTISQLDGVRSARVHLVIPEESLFSD- 166 Query: 168 GARPTASVMIRAINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLLTANEMER 224 +PT + ++ + P + E +R HLV+A+VP L VTV+D +G L + Sbjct: 167 QQQPTTAAVVLQLKPGSRLTDEQVRGVVHLVSASVPGLQPEHVTVVDESGNALWSGGGVA 226 Query: 225 NILGKS--LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS 282 G S L +A + + + +A +G +N V A + D +Q+ +Y P+ Sbjct: 227 AAGGMSDHLKAQRAFETAMATQLQTVVARVVGNNNAAVQVSASFDWDQRQVDSEIYSPNG 286 Query: 283 KVERSIRLSKDAQRSE--TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEI 340 + + Q SE S P V+ N+ + ++ + ++ +E NYE+ Sbjct: 287 TQPQVRSQQERVQTSEGTASGPIGIPGVDSNVGSYQEGAA--QQNQQRSELRETTVNYEL 344 Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE-INKIVSAATGIN 399 + + K++RLS+AVV+N +D +AE + +V+AA GI Sbjct: 345 SRQVERVVQAPGKVQRLSVAVVLNS-------------AAVDPAVAEQVRDLVAAAAGIV 391 Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDIL 432 RGD +T++ + F S Q + MD L Sbjct: 392 PERGDQVTVSVVPFTTATAEESAA-QPTLMDRL 423 >gi|194451642|ref|YP_002046020.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195873172|ref|ZP_02696421.2| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|205357978|ref|ZP_03223896.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205359405|ref|ZP_02669752.2| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194409946|gb|ACF70165.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195633848|gb|EDX52200.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|205328375|gb|EDZ15139.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205336392|gb|EDZ23156.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|323130248|gb|ADX17678.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 579 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 129/433 (29%), Positives = 210/433 (48%), Gaps = 58/433 (13%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 63 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 122 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 123 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 180 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + P+ASV + RA++ A+ HLV++AV L G+VT++D +G Sbjct: 181 PSLFVREQKSPSASVTVTLEPGRALD---EGQISAVVHLVSSAVAGLPPGNVTLVDQSGH 237 Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT +N R++ L ++ I+ I L+ +G N + V A+L+ ++ Sbjct: 238 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 297 Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309 E Y P+ ++ S+ SE ++QP E+ + Sbjct: 298 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 357 Query: 310 QNMPHVS---DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 QN P S + PRS + + E SNYE++ T + +ERLS+AVVVN Sbjct: 358 QNTPQTSTSTNSNSAGPRSTQ----RNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYK 413 Query: 367 RLTE--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG-- 422 L + L +ADQ K +I + A G + +RGDT+ + + F + + N+G Sbjct: 414 TLADGKPLPLTADQMK------QIEDLTREAMGFSDKRGDTLNVVNSPF--SAVDNTGGE 465 Query: 423 ---TVQVSFMDIL 432 Q SF+D L Sbjct: 466 LPFWQQQSFIDQL 478 >gi|149194458|ref|ZP_01871555.1| flagellar M-ring protein [Caminibacter mediatlanticus TB-2] gi|149135633|gb|EDM24112.1| flagellar M-ring protein [Caminibacter mediatlanticus TB-2] Length = 559 Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 125/387 (32%), Positives = 203/387 (52%), Gaps = 39/387 (10%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 +Y L+ L+ D I L + I ++I +NG I VP +VGK R+ +AAQGLP SS Sbjct: 52 NYAILFENLKPQDAALIVQYLDKKQIPYKIPENGI-IEVPKDIVGKVRLDVAAQGLPKSS 110 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 G+E+FDK NSFG T F Q + +RALEGE+A+TI+SI+ + A+V+I +P F + Sbjct: 111 K-VGFEIFDK-NSFGATDFEQRVKYLRALEGELAKTIESIAAVEEAKVNIAIPKESVFVE 168 Query: 167 IGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-- 221 PTAS++I+ + P++ K E I+ LVAAAVP L +V ++D G L N Sbjct: 169 NQTPPTASILIK-LRPNMTLTPKQIEGIKWLVAAAVPKLKPENVKIVDQYGNPLGENSEA 227 Query: 222 -MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ----QIREI 276 +L L + ++ +E I+ +A +G N VVA++++D + + Sbjct: 228 VANSELLKAELLYKKRLEKALEDKISSLIAPIVGGKN---KVVAKVSLDIDFSKVKSKAT 284 Query: 277 VYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN----MPHVSDRKVPLPRSLENT--- 329 +Y PD+ V RSE + ES + ++ +P P+ + N Sbjct: 285 IYSPDNVV-----------RSEQTLEESRIGIKPKEVGGVPGAVSNIGPVQGTKNNQIVD 333 Query: 330 --DKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLA 386 +K E +NYEI+T +I D+Y K++R++ AVVV+ + G+ + + Sbjct: 334 KYNKTETTTNYEIST-TIKDIKDDYPKIKRITAAVVVDGYYKKDKDGKIKFVPLSEMQIK 392 Query: 387 EINKIVSAATGINSRRGDTITITSMDF 413 I +V A GI+ +RGD+++++S F Sbjct: 393 SIENLVKNAIGIDPKRGDSVSVSSFQF 419 >gi|163742558|ref|ZP_02149944.1| flagellar M-ring protein FliF [Phaeobacter gallaeciensis 2.10] gi|161384143|gb|EDQ08526.1| flagellar M-ring protein FliF [Phaeobacter gallaeciensis 2.10] Length = 574 Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 146/497 (29%), Positives = 240/497 (48%), Gaps = 43/497 (8%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 R R++ + + ++V I+ +A N+P LY LE + AL + ++ + Sbjct: 27 RKRLIAVGATVIV-ILSVLAMSRVANTPTMQLLYAGLESGSAGDVVRALEQRGTEYEV-- 83 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 G SI VP++ + R+ LA++GLP++ GYEL D ++ FG TS M + RA EGE Sbjct: 84 RGGSIYVPATARDELRMTLASEGLPANGGR-GYELLDSLSGFGTTSQMFDAAYWRAKEGE 142 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN-PSVYKSAEAIRHLVAA 197 +ARTI + + ARVHI F++ A PTASV + + P A AIR L+++ Sbjct: 143 LARTIVASPHVTQARVHIANTGSNPFQRT-AEPTASVSVVPMGSPITPAQANAIRFLISS 201 Query: 198 AVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDN 257 AV L + +V V+D+ G L+ + E + + Q+I+ + + + A +G N Sbjct: 202 AVTGLAVENVAVIDANGALIGSPEAAAAVGAGTDDRSQSIRE----RVMRLVEARVGHGN 257 Query: 258 FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA-VTVEQNMPHVS 316 V E DT+ IRE DP+S+V S + +R+++SQ +S VTV N+P Sbjct: 258 AVVEVSVETVTDTESIREKRIDPESRVAISTDVE---ERADSSQNQSGEVTVASNIPD-- 312 Query: 317 DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA 376 S +T E+ NYEI+ ++RL++AV++N +T G + Sbjct: 313 GDAASGDGSKASTSATRERVNYEISETEKEILRGPGAIKRLTVAVLLNGVPITTATGETV 372 Query: 377 DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF--LENQLFNSGTVQVS------F 428 + + + L + +++SAA G + RGD IT+ SM+ +E Q GTV + + Sbjct: 373 MEPRSEEELGALRELISAAVGFSEERGDVITLKSMEMPTVEPQ----GTVVSASIFDNIY 428 Query: 429 MDILSRHFATVINALVFLVGTLLVTF-LGLHALRRL--HNIDDAKKGEVGGKSILSPPPI 485 +D +S L+ + LVT LGL +R + + G GG ++ P + Sbjct: 429 LDAMS---------LIQMAALALVTLILGLFVIRPILSNQASVPALGAPGGDAMDELPAL 479 Query: 486 SSAVTTGLMPNDNIALD 502 G M N N+ D Sbjct: 480 GGG---GFMANPNLGAD 493 >gi|321224614|gb|EFX49677.1| Flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 531 Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 128/433 (29%), Positives = 210/433 (48%), Gaps = 58/433 (13%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 15 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 74 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 75 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 132 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + P+ASV + RA++ A+ HLV++AV L G+VT++D +G Sbjct: 133 PSLFVREQKSPSASVTVTLEPGRALDEG---QISAVVHLVSSAVAGLPPGNVTLVDQSGH 189 Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT +N R++ L ++ I+ I L+ +G N + V A+L+ ++ Sbjct: 190 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 249 Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309 E Y P+ ++ S+ SE ++QP E+ + Sbjct: 250 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 309 Query: 310 QNMPHVS---DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 QN P S + PRS + + E SNYE++ T + +ERLS+AVVVN Sbjct: 310 QNTPQTSTSTNSNSAGPRSTQ----RNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYK 365 Query: 367 RLTE--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG-- 422 L + L +ADQ + +I + A G + +RGDT+ + + F + + N+G Sbjct: 366 TLADGKPLPLTADQ------MKQIEDLTREAMGFSDKRGDTLNVVNSPF--SAVDNTGGE 417 Query: 423 ---TVQVSFMDIL 432 Q SF+D L Sbjct: 418 LPFWQQQSFIDQL 430 >gi|227355980|ref|ZP_03840372.1| flagellar M-ring protein [Proteus mirabilis ATCC 29906] gi|227163968|gb|EEI48870.1| flagellar M-ring protein [Proteus mirabilis ATCC 29906] Length = 573 Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 138/550 (25%), Positives = 252/550 (45%), Gaps = 60/550 (10%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++ SP Y LY L D I L++ N+ +R+S NGS+I VP + V + R+ LA Sbjct: 46 LWLQSPDYKVLYSNLSDKDGGEIVTQLTQMNVPYRLSQNGSAIMVPDNQVHELRLKLAQA 105 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + +G+EL DK FG++ F ++I RALEGE+ARTI+++ + ARVH+ +P Sbjct: 106 GLPKGGA-AGFELLDK-EKFGISQFSEQINYQRALEGELARTIETLGPVQNARVHLALPK 163 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + + + AI H+VA++V + +VT++D +GKLLT Sbjct: 164 PSLFVREQKSPSASVTVGLLQGRALDEGQINAIVHIVASSVAGMPDSNVTIVDQSGKLLT 223 Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 + + R++ L VQ ++ + I L +G N + V A+++ + Sbjct: 224 QPDALGRDLNSIQLKYVQELESRYQQRIETLLGPIVGRGNVHAQVTAQVDFSHTEETAEE 283 Query: 278 YDPDSKVERSIRLSKDAQRSE--------------TSQP--ESAVTVEQNMPHVSDRKV- 320 Y P+ ++ SK +SE ++QP +E+ +D K Sbjct: 284 YKPNQPPNQAAVRSKQVSQSEQNGGMLAGGVPGALSNQPVAPPQAPIEKAKDTAADEKAT 343 Query: 321 ------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN------KGRL 368 + R+ + + +E +NYE++ + +ERLS+AV+VN K + Sbjct: 344 STNANRSMTRNPNSNSRLDETTNYEVDRRIRHVKRPVGNIERLSVAVIVNYKTVEDKKKA 403 Query: 369 TEVLGRSADQGKI---DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425 TE + ++ D L +I +V A G + RGD++++ N FN + Sbjct: 404 TEGEEPIVENKQVPLTDEQLQQIESLVREAMGYSQERGDSLSVV------NSQFND--TE 455 Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL--HNIDDAKKGEVGGKSILSPP 483 + + ++ + L LL+ + R+L ++ ++ EV + + Sbjct: 456 EPVISVPMWENPQILAKALDLGRWLLLVIIAWILWRKLVKPQLEKRREAEVAAQKAI--- 512 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 + T L D++ + + D S + + R+++ + Q R+ M E + A Sbjct: 513 -----LKTKLEVTDDV--NEAELDEESRRKQARQRVSAELQSQ---RIREMAEKDPRVVA 562 Query: 544 KILRKWARSE 553 ++R+W E Sbjct: 563 MVIRQWMSKE 572 >gi|253996299|ref|YP_003048363.1| flagellar M-ring protein FliF [Methylotenera mobilis JLW8] gi|253982978|gb|ACT47836.1| flagellar M-ring protein FliF [Methylotenera mobilis JLW8] Length = 546 Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 142/498 (28%), Positives = 231/498 (46%), Gaps = 63/498 (12%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y L+ D I AL + N+ ++ SD+G++I VP++ V + R+ LAA Sbjct: 42 LWSQQPDYRVLFSNYSDKDGGAIVAALEKLNVPYKFSDSGTAIMVPAAQVHQVRLKLAAD 101 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP N G+EL + FG++ F++++ R LEGE+ R+IQSI+ + AR+H+ +P Sbjct: 102 GLPKGG-NIGFELLEN-QKFGVSQFVEQVNFQRGLEGELERSIQSIAAVEVARIHLAIPK 159 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + +PTASV++ + P A+ A+ HLVA++VPNL +VTV+D G LL Sbjct: 160 PSVFVRDQQKPTASVLLN-LRPGRTLDAQQVSAVVHLVASSVPNLPTTNVTVVDQNGNLL 218 Query: 218 --TANEM-ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 T +M +N+ + L V+ IQ I + ++ +G N R+ AE++ Q+ Sbjct: 219 SDTTKKMGAKNLDPEQLKYVEEIQQSIVKRVESIISPIVGAKNVRAEASAEIDFSVQEQA 278 Query: 275 EIVY----DPDSKVERSIRLSK-DAQRSETS--------QPESAVTVEQNMPHVSD-RKV 320 Y PD+ RS++ ++ + ET+ QP A T +D Sbjct: 279 AETYKPNQQPDAAAVRSMQSNETKSANGETAGVPGALSNQPPPAATAPITTEANADANGQ 338 Query: 321 PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380 P + +K +NYE++ ++RL++AVVVN + + GK Sbjct: 339 PASNATPTNTEKNLTTNYEVDKTVSYRQQPMGGVKRLNVAVVVNNMPVVD-----KKTGK 393 Query: 381 IDSYLA-------EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDIL- 432 + SY A +IN + A G N RGD++ I + F +G Q I Sbjct: 394 V-SYRALTVAEKTQINDLAMQAMGFNKERGDSLAIVNTPF-------AGEPQEVLPAIPL 445 Query: 433 ---SRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAV 489 R V + L F VG + + + L+ L N + +PP +AV Sbjct: 446 WENPRVIENVKDVLRFAVGVIALLIIYRKVLKPLLN------------KLTTPP--KAAV 491 Query: 490 TTGLMPND--NIALDSSN 505 G P+ +I+ D SN Sbjct: 492 NQGEAPDAVVSISADGSN 509 >gi|292487992|ref|YP_003530869.1| flagellar M-ring protein FliF [Erwinia amylovora CFBP1430] gi|292899212|ref|YP_003538581.1| flagellar M-ring protein [Erwinia amylovora ATCC 49946] gi|291199060|emb|CBJ46171.1| flagellar M-ring protein [Erwinia amylovora ATCC 49946] gi|291553416|emb|CBA20461.1| Flagellar M-ring protein FliF [Erwinia amylovora CFBP1430] gi|312172117|emb|CBX80374.1| Flagellar M-ring protein FliF [Erwinia amylovora ATCC BAA-2158] Length = 573 Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 143/555 (25%), Positives = 256/555 (46%), Gaps = 68/555 (12%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y L+ L D I L++ N+ ++ D G ++ VP++ V + R+ LA+Q Sbjct: 46 LWAKQPDYRVLFSNLSNEDGGTIVTQLTQMNVPYKFDDRGGALLVPAAQVHELRLRLASQ 105 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL DK FG++ F +++ RALEGE+ARTI ++ + ARVH+ MP Sbjct: 106 GLPKGGA-VGFELLDK-EKFGISQFSEQVNYQRALEGELARTISTLGPVKDARVHLAMPK 163 Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + P+ASV + A+ P A+ H+V+++V + G+VTV+D +G+LL Sbjct: 164 PTLFVREQKSPSASVTL-ALQPGRALDEGQINAVVHMVSSSVAGMPPGNVTVVDQSGRLL 222 Query: 218 TANEM-ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 T N+ R++ L ++ + I L LG N + V A+++ + ++ + Sbjct: 223 TQNDPGGRDLNDTQLKYANDVETRYQQRIEAILGPILGNGNVHAQVTAQIDFNKREKTDE 282 Query: 277 VYDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPHVSDRKVPL----------- 322 Y P++ +R S+ SE SA V N P ++ P+ Sbjct: 283 QYSPNTNPDRQAIRSRQTSNSEQLGGPSAGGVPGALSNQPAPAN-AAPVTTANPNANNAN 341 Query: 323 --------------------PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 +++ ++ + + +NYE+N + T + +++RLS+AVV Sbjct: 342 AANAANANNGQPANNAASGAQKTVPSSTRSDNTTNYEVNRTILHTKMNVGEVQRLSVAVV 401 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 VN T+ G+ DS + +I + A G + +RGD++ + + F +N + Sbjct: 402 VN--FRTDAAGKPI--ALKDSQIKQIENLTREAMGFSEQRGDSLNVVNSQFTDNSDLAAE 457 Query: 423 ---TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 Q +F+D L F LV +V +L L LRR A + E G ++ Sbjct: 458 LPFWKQPAFIDQL---FNAGRWLLVLIVAFILYRKLVSPQLRRKAEQQKAAE-EAAGNAL 513 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 S ++ +A+ S ++D + R Q R+++ V Q R+ M E + Sbjct: 514 RSS-----------TQDEGVAV-SLSKDELNQERKSQHRMSAEVLSQ---RIREMSENDP 558 Query: 540 ERFAKILRKWARSEI 554 A ++R+W + E+ Sbjct: 559 RVVALVIRQWMKDEL 573 >gi|329901251|ref|ZP_08272776.1| Flagellar M-ring protein fliF [Oxalobacteraceae bacterium IMCC9480] gi|327549183|gb|EGF33775.1| Flagellar M-ring protein fliF [Oxalobacteraceae bacterium IMCC9480] Length = 564 Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 121/438 (27%), Positives = 208/438 (47%), Gaps = 33/438 (7%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 A+ + L+ F +S GR +L+L + I++ +M + P Y L+ D Sbjct: 9 AVPNPLISFAES--QGGRNLLLMLGAAIVIAVM--AGVWMWSQQPDYRVLFSNFTDRDGG 64 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L + N+ ++ ++ G +I VP+ V AR+ +AA GLP N G+EL + G Sbjct: 65 AIVTQLQQMNVPYKFAEGGGAILVPADQVHDARLRIAAMGLPKGG-NVGFELMEN-QKLG 122 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 ++ F++++ RALEGE+AR++QSI + +ARVH+ MP F + +PTASV++ +N Sbjct: 123 VSQFLEQVNFQRALEGELARSVQSIGAVESARVHLAMPKASVFVRDQQKPTASVVLN-LN 181 Query: 182 PSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQ 235 P S + AI HLVA++VP+L G+++V+D G LL+ G L +Q Sbjct: 182 PGRSLSEQQVSAIVHLVASSVPDLPPGNISVIDQNGNLLSDTSKAAKATGLDPTQLKYIQ 241 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 +Q I I + +G +N R+ A+++ T + Y P+S +S S+ + Sbjct: 242 EVQQNIVRRIESIITPIVGPNNVRAEATADIDFSTSEQAAETYKPNSPPNQSTMRSQQSS 301 Query: 296 RSETSQPESA--VTVEQNMPHVSDRKVPLPRSLEN------------------TDKKEEQ 335 S+ S P + N P + P + +K+ Sbjct: 302 ESQGSNPGAGGVPGALSNQPAANATAPINPPAPAPAPAAGQGVSTGATATAAVPSQKDMT 361 Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395 NYE++ ++R+S+AVVVN ++T+ G+ ++ +I +V A Sbjct: 362 VNYEVDKTVRYVQQPMGGVKRISVAVVVNYKQVTDKAGKVTATPLTEAERVQITDLVKEA 421 Query: 396 TGINSRRGDTITITSMDF 413 G N RGDT+ + + F Sbjct: 422 MGFNKDRGDTLNVVNSAF 439 >gi|260222430|emb|CBA31986.1| hypothetical protein Csp_D29860 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 579 Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 118/416 (28%), Positives = 205/416 (49%), Gaps = 37/416 (8%) Query: 22 ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81 I + ++ +V +++ A + V LY L D + L+ N+ ++ ++ G Sbjct: 49 IALFVAIAVVGLVMGRQAEWRV-------LYSNLADKDGGAVIAQLTTMNVPYKYTEGGG 101 Query: 82 SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 +I VP+ V R+ LA+QGLP S SG+E+ + N FG+T F + +T R LEGE+ R Sbjct: 102 AILVPADRVHDVRLKLASQGLPKGSV-SGFEMME-ANRFGMTQFQERLTFQRGLEGELTR 159 Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVA 196 +IQ++S + +ARVH+ +P+ F + +P+ASV++ RA++ I HLVA Sbjct: 160 SIQALSSVSSARVHLALPNQNGFFREQQKPSASVLLSLHPGRALD---KGQLAGIVHLVA 216 Query: 197 AAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255 ++VP ++ V+VLD TGKLL+AN + + + L VQ I+ I L +G Sbjct: 217 SSVPEMNPSAVSVLDDTGKLLSANPDAAAGVDAEQLQYVQQIEQLYSRRILDMLEPLVGK 276 Query: 256 DNFRSAVVAELNM----DTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311 N ++ V AEL+ T + + PDS RS +L + ++ + P N Sbjct: 277 QNVKAQVTAELDFSQTESTTESHKPNQTPDSGAVRSQQLVESTNGTQPTPPAGVPGATTN 336 Query: 312 MPHVSDRKVPL---PRSL-----------ENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 P + P+ P++L ++ KKE NYE++ T ++R+ Sbjct: 337 QPP-AQPAAPINGQPQTLAANGQTAAGSTNSSSKKESIINYEVDKTIRVTKGAVGAIKRI 395 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 + AVV+N +T+ G + ++ L ++ +V G N RGD++ + + F Sbjct: 396 NAAVVLNNQSVTDAKGVTTSVALTEAQLEKMTALVRETVGFNQDRGDSVNVVNAPF 451 >gi|224583532|ref|YP_002637330.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224468059|gb|ACN45889.1| flagellar M-ring protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 560 Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 128/430 (29%), Positives = 208/430 (48%), Gaps = 52/430 (12%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 44 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 103 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 104 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 161 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + P+ASV + RA++ A+ HLV++AV L G+VT++D +G Sbjct: 162 PSLFVREQKSPSASVTVTLEPGRALD---EGQISAVVHLVSSAVAGLPPGNVTLVDQSGH 218 Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT +N R++ L ++ I+ I L+ +G N + V A+L+ ++ Sbjct: 219 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 278 Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309 E Y P+ ++ S+ SE ++QP E+ + Sbjct: 279 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 338 Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369 QN P S NT ++ E SNYE++ T + +ERLS+AVVVN L Sbjct: 339 QNTPQTSTSTNSNSAGPRNT-QRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLA 397 Query: 370 E--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG----- 422 + L +ADQ K +I + A G + +RGDT+ + + F + + N+G Sbjct: 398 DGKPLPLTADQMK------QIEDLTREAMGFSDKRGDTLNVVNSPF--SAVDNTGGELPF 449 Query: 423 TVQVSFMDIL 432 Q SF+D L Sbjct: 450 WQQQSFIDQL 459 >gi|300696960|ref|YP_003747621.1| FliF: flagellar biosynthesis protein, M-ring protein, Belongs to the fliF family [Ralstonia solanacearum CFBP2957] gi|299073684|emb|CBJ53204.1| FliF: Flagellar biosynthesis protein, M-ring protein, Belongs to the fliF family [Ralstonia solanacearum CFBP2957] Length = 616 Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 137/471 (29%), Positives = 227/471 (48%), Gaps = 80/471 (16%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y LY + SD I AL + N+ +R +D GS+I VP + V +AR+ LAAQ Sbjct: 66 LWSRAPDYRVLYSNVADSDGGAIIAALQQMNVPYRFADGGSAIMVPEANVHEARLKLAAQ 125 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP +G+EL + FG + F +++ RALEGE+ARTIQ++ + +ARVH+ + Sbjct: 126 GLPKGGL-AGFELMEN-QKFGTSQFAEQVNYQRALEGELARTIQAMQEVQSARVHLALSK 183 Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + +P+ASV+++ + P +AI HL++++VPNL + +VTV+D +G+LL Sbjct: 184 PSVFVREQVKPSASVLLK-LYPGRMLDRSQVQAIGHLLSSSVPNLPLANVTVVDQSGRLL 242 Query: 218 TANEMERNILG---KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQI 273 +++ + N G L+ V+ I+ I L +G DN R+ V A++++D T+Q+ Sbjct: 243 SSS-FQDNASGLDPTQLNYVRDIEQGYIKRIEAILGPVVGEDNVRAQVTADVDLDNTEQM 301 Query: 274 REIV---YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVP--------- 321 E DP + V RS S+ Q +Q N P + R +P Sbjct: 302 AETYRPNQDPANGVVRSTHTSESTQSKAGAQ-GGVPGALSNQPPTAPRMLPTAPAPASQQ 360 Query: 322 --------LPRSLENTDKKEEQS--------------------NYEINTKSIATTHDNYK 353 ++ N ++Q NYE++ T Sbjct: 361 AAAGQNGQNGQNGPNAQNGQQQGAATGQAATNNVESSARDTTVNYEVDKTVRRTRAAVGT 420 Query: 354 LERLSIAVVVN---KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 + RLS+AVVVN G+ + L D+ + ++N +V A G +++RGD++ + + Sbjct: 421 VRRLSVAVVVNYRADGKTWKPLS--------DADMVKLNALVKDAVGYDAKRGDSVNVVN 472 Query: 411 MDFLENQLFNSGTVQVSFMDI-LSR-----HFATVINALVFLVGTLLVTFL 455 F SGT+ S D+ L + H+A I A + G L + FL Sbjct: 473 SQF-------SGTLPTSKDDLPLWKQPEMIHYA--IQAAKY--GALAIGFL 512 >gi|218887376|ref|YP_002436697.1| flagellar M-ring protein FliF [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758330|gb|ACL09229.1| flagellar M-ring protein FliF [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 539 Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 122/428 (28%), Positives = 216/428 (50%), Gaps = 17/428 (3%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 + +A + + + +F F++N P Y LY L D +R+ L + +++ GSS Sbjct: 25 IFIAGLAVAVVAVFFGLVFWMNRPDYRVLYSNLSPEDASRVVKLLQADKVAYKLESGGSS 84 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I+VP+ V R+ +A +G G+E+FD+V G T F+Q+I RAL+GE++RT Sbjct: 85 ITVPADKVYDLRLKVAGEG-NLVGQGIGFEIFDQVK-VGQTDFVQKINYQRALQGELSRT 142 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAV 199 I + +ARVH+V+P F + +P+ SV+++ + S K +AI +LV AV Sbjct: 143 ISEFPNVESARVHLVIPHRSLFIEEQQKPSVSVVLKLRDSSKKLESKDVQAIVNLVVMAV 202 Query: 200 PNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ---AIQHEIEMNINKALAAFLGVD 256 LD V++ D+TGK+L A + + +I G + + + +Q +E I + L LG Sbjct: 203 EGLDKYKVSIADTTGKILYAPDEDGSITGMTTTQLDHKLRMQQTLERRIEELLYPVLGAG 262 Query: 257 NFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVS 316 + V A+L+ + IR+ +YDP+ V RS + S+++QR ++ +E P + Sbjct: 263 KIIAKVNADLDFSQRTIRKELYDPEKTVVRSEQRSEESQRGRSN-------LEAGSPDAN 315 Query: 317 DR-KVPL-PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR 374 R P S + +++ +NYEIN + + RL++AV+V+ G+ Sbjct: 316 FRGDSPTGGASTQEGNRETRTTNYEINKEEQNIVAQVGDISRLTVAVIVDGTYEKGADGQ 375 Query: 375 SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSR 434 A + + I ++V+ A G + RGDTI ++S+ F + ++ MD R Sbjct: 376 WAFVPRKAEDVERIRQLVANAVGYDRARGDTIEVSSISFGGPDVPQESSLPQLVMDYALR 435 Query: 435 HFATVINA 442 ++NA Sbjct: 436 LGKPLLNA 443 >gi|149928162|ref|ZP_01916408.1| flagellar M-ring protein FliF [Limnobacter sp. MED105] gi|149823147|gb|EDM82385.1| flagellar M-ring protein FliF [Limnobacter sp. MED105] Length = 575 Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 113/412 (27%), Positives = 201/412 (48%), Gaps = 28/412 (6%) Query: 28 VILVPIMLFMAARF--FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISV 85 +I VP+++ + A + N Y L+ L D I AL++ + + + G++I V Sbjct: 38 LIGVPLLIAVIASLLMWANQTSYRVLFSGLNDQDGGAIVEALTQMKVPYEFNTAGTAILV 97 Query: 86 PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145 PS+ V R+ LA+QGLP S SG+E D G+T F +++ RALEGE+ R+IQS Sbjct: 98 PSNKVYDTRLALASQGLPKGSV-SGFEAMDN-QKLGITQFQEQVNYQRALEGELVRSIQS 155 Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLD 203 IS + +ARVH+ +P F + P+AS+++ + I HLVA+++P ++ Sbjct: 156 ISAVQSARVHLAIPKPSIFIREKQTPSASIVLNLFGSRTLSEPQINGIVHLVASSLPGMN 215 Query: 204 MGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAV 262 DV+++D +G+LLT ++E + L+ I+ + I L+ G +N R+ V Sbjct: 216 PEDVSIVDQSGRLLTGKTQLESGLNPTQLAYTNQIEQSLTSRIVDILSPVFGSENVRATV 275 Query: 263 VAELNMDTQQIREIVYDPDSKVE----RSIRLSKDAQRSETSQP-------------ESA 305 A ++ + + +Y P+ RS ++S+ S + P E+A Sbjct: 276 TANMDYSMSERTDEIYKPNGDTTQATIRSQQISESNDGSSNANPQGIPGVMANTPPGEAA 335 Query: 306 VTVEQN----MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 + QN + + + P ++ +K+ NYE++ T K+ERLS AV Sbjct: 336 ANIGQNPQQALANGVNGGTSTPTQTNSSTRKDSTVNYEVDKSVQYTKSQVGKIERLSAAV 395 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 VVN +T+ G + + +++ +V A G + +RGD + + + F Sbjct: 396 VVNYKTITDPKGETRQVPLTPEEITQLDSLVKQAIGFDEQRGDAVNVVNQAF 447 >gi|194445262|ref|YP_002041234.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194736346|ref|YP_002115003.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197301177|ref|ZP_02664267.2| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204931028|ref|ZP_03221854.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|194403925|gb|ACF64147.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194711848|gb|ACF91069.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288091|gb|EDY27478.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204320072|gb|EDZ05277.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 579 Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 133/449 (29%), Positives = 215/449 (47%), Gaps = 55/449 (12%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 63 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 122 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 123 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 180 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + P+ASV + RA++ A+ HLV++AV L G+VT++D +G Sbjct: 181 PSLFVREQKSPSASVTVTLEPGRALD---EGQISAVVHLVSSAVAGLPPGNVTLVDQSGH 237 Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT +N R++ L ++ I+ I L+ +G N + V A+L+ ++ Sbjct: 238 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 297 Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309 E Y P+ ++ S+ SE ++QP E+ + Sbjct: 298 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 357 Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369 QN P S NT ++ E SNYE++ T + +ERLS+AVVVN L Sbjct: 358 QNTPQTSTSTNSNSAGPRNT-QRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLA 416 Query: 370 E--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG----- 422 + L +ADQ K +I + A G + +RGDT+ + + F + + N+G Sbjct: 417 DGKPLPLTADQMK------QIEDLTREAMGFSDKRGDTLNVVNSPF--SAVDNTGGELPF 468 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLL 451 Q SF+D L A LV +V +L Sbjct: 469 WQQQSFIDQL---LAAGRWLLVLVVAWIL 494 >gi|39648187|emb|CAE26707.1| putative flagellar M-ring protein [Rhodopseudomonas palustris CGA009] Length = 522 Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 127/444 (28%), Positives = 216/444 (48%), Gaps = 14/444 (3%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 +I +V LV F+ R V+ P LY L V D + I L I F + ++G+ Sbjct: 3 MIAVTVALVGFFAFVIMR--VSQPQMTTLYTDLSVEDSSSIIKELERQGIPFEMRNDGAI 60 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 + VP V + R+ LA +G GYE+FDK ++ G TSF+Q I +RALEGE++RT Sbjct: 61 LLVPKDKVTRLRMKLA-EGGLPKGGGVGYEIFDKSDALGTTSFVQNINHLRALEGELSRT 119 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNL 202 I++I + AARVH+V+P+ F + P+AS+++R + AIRHLVA+AV L Sbjct: 120 IRAIDRVQAARVHLVLPERPLFSREAPEPSASIVLRVRGALEPQQVRAIRHLVASAVNGL 179 Query: 203 DMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ--AIQHEIEMNINKALAAFLGVDNFRS 260 V+++D G+LL + + S + A + + I +++ +G R Sbjct: 180 KPQRVSIVDEAGQLLADGSASGEQVEGATSDERRAAFEKRMRNQIEGIVSSVVGSGRARV 239 Query: 261 AVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV 320 V A+ + + +DP+ +V RS + +++ + TS + VTV +P + + Sbjct: 240 QVSADFDYNKITQTSDKFDPEGRVLRSSQTREES--AATSAADGQVTVNNELPGANQGQG 297 Query: 321 PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380 R + + K EE +NYEI+ + + ++ RLS+AV+V+ G + Sbjct: 298 AGARDV--SKKSEETNNYEISRVTKTEVTEAGRVNRLSVAVLVDGAYTKNDKGELVYAER 355 Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440 L I +V +A G + +RGD I + ++ F E M + ++ Sbjct: 356 PKEQLDRIAALVRSAIGFDQKRGDQIEVVNLKFAEAPQVEKLPEPAGLMGMFQFTKDDIM 415 Query: 441 N----ALVFLVGTLLVTFLGLHAL 460 N ++FL+G L+V F+ + L Sbjct: 416 NMIQLGVMFLLG-LVVLFMVIRPL 438 >gi|198243509|ref|YP_002215117.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197938025|gb|ACH75358.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 576 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 133/449 (29%), Positives = 215/449 (47%), Gaps = 55/449 (12%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 60 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 119 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 120 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 177 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + P+ASV + RA++ A+ HLV++AV L G+VT++D +G Sbjct: 178 PSLFVREQKSPSASVTVTLEPGRALD---EGQISAVVHLVSSAVAGLPPGNVTLVDQSGH 234 Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT +N R++ L ++ I+ I L+ +G N + V A+L+ ++ Sbjct: 235 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 294 Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309 E Y P+ ++ S+ SE ++QP E+ + Sbjct: 295 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 354 Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369 QN P S NT ++ E SNYE++ T + +ERLS+AVVVN L Sbjct: 355 QNTPQTSTSTNSNSAGPRNT-QRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLA 413 Query: 370 E--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG----- 422 + L +ADQ K +I + A G + +RGDT+ + + F + + N+G Sbjct: 414 DGKPLPLTADQMK------QIEDLTREAMGFSDKRGDTLNVVNSPF--SAVDNTGGELPF 465 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLL 451 Q SF+D L A LV +V +L Sbjct: 466 WQQQSFIDQL---LAAGRWLLVLVVAWIL 491 >gi|194469863|ref|ZP_03075847.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|200390157|ref|ZP_03216768.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205358799|ref|ZP_02659200.2| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194456227|gb|EDX45066.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|199602602|gb|EDZ01148.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205331875|gb|EDZ18639.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 579 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 122/409 (29%), Positives = 199/409 (48%), Gaps = 51/409 (12%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 63 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 122 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 123 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 180 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + P+ASV + RA++ A+ HLV++AV L G+VT++D +G Sbjct: 181 PSLFVREQKSPSASVTVTLEPGRALD---EGQISAVVHLVSSAVAGLPPGNVTLVDQSGH 237 Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT +N R++ L ++ I+ I L+ +G N + V A+L+ ++ Sbjct: 238 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 297 Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309 E Y P+ ++ S+ SE ++QP E+ + Sbjct: 298 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 357 Query: 310 QNMPHVS---DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 QN P S + PRS + + E SNYE++ T + +ERLS+AVVVN Sbjct: 358 QNTPQTSTSTNSNSAGPRSTQ----RNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYK 413 Query: 367 RLTE--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 L + L +ADQ K +I + A G + +RGDT+ + + F Sbjct: 414 TLADGKPLPLTADQMK------QIEDLTREAMGFSDKRGDTLNVVNSPF 456 >gi|269836582|ref|YP_003318810.1| flagellar M-ring protein FliF [Sphaerobacter thermophilus DSM 20745] gi|269785845|gb|ACZ37988.1| flagellar M-ring protein FliF [Sphaerobacter thermophilus DSM 20745] Length = 535 Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 154/556 (27%), Positives = 259/556 (46%), Gaps = 65/556 (11%) Query: 21 RILILASVI--LVPIMLFMAARFFVNSPH-YDNLYVKLEVSDVNRISVALSEANIDFRIS 77 R+ ++A VI ++ + L +A R P Y + L D I L I + +S Sbjct: 21 RVAVIAVVITAVMALGLLIATR----PPQRYGIAFSGLSSEDAAAIVENLRAQGIPYELS 76 Query: 78 DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137 +G +I VP+ V R+ A+QGLP S+ G+ELFDK +S GLT F Q + RA+EG Sbjct: 77 SDGGTIRVPADQVAAVRLDAASQGLPRGGSD-GFELFDK-SSLGLTDFTQRVNYQRAIEG 134 Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLV 195 E+ RTI I + AARVHIV+P+ F + TA+V+++ + A+ I HLV Sbjct: 135 ELERTIAKIDAVEAARVHIVIPEESLFIEEQQPTTAAVVLKLKSGRQLTEAQIRGITHLV 194 Query: 196 AAAVPNLDMGDVTVLDSTG-KLLTANEMERNILG--KSLSIVQAIQHEIEMNINKALAAF 252 + AVPNL ++TV+D+TG + + + G + + QA + +E + + Sbjct: 195 SGAVPNLQPENLTVIDNTGNPIWSGPDGGSQFAGLDERFRLQQAYEQNLERQLQALVNPI 254 Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNM 312 G + V A LN D + + +Y PD ++ +R S+ + TS VT + Sbjct: 255 AGPGHAVVRVSATLNWDERSSQSEIYSPDG-LQPQVR-SQQEREQRTS---GTVTETGGV 309 Query: 313 PHVSDR-----KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367 P V + + P S + +E +NYE++ + +++RLS+AV++ Sbjct: 310 PGVDENVQTFPETPGAGSQSESSSREVTTNYELSRRIEEVVQAPGQVQRLSVAVML---- 365 Query: 368 LTEVLGRSADQGKIDSYLA-EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 D ++D +A EI ++SAA G+ +RGDTIT+T++ F + + N + Sbjct: 366 ---------DGSQVDPAVAQEIQDVISAAAGLVPQRGDTITVTAVPF--SDVGNRELIPD 414 Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR-LHNIDDAKK-----GEVGGKSIL 480 IL +A + AL L G + + + L+ RR L +DA + VGG ++ Sbjct: 415 GGTPIL--EYA--LTALKVL-GLIAIPLVALYFARRVLVKPEDAGELTPALATVGGPAVT 469 Query: 481 SPPPISSAVTTGLMP---NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 PP MP I + + + + QS + L+++ + Sbjct: 470 EPP----------MPALATQRITISETPPQLEDEDPS-QSTDRGLPQLPAHLQVIELANT 518 Query: 538 NEERFAKILRKWARSE 553 + + A++LR W E Sbjct: 519 DPAQVAQLLRAWMSEE 534 >gi|197264219|ref|ZP_03164293.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197242474|gb|EDY25094.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 579 Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 122/409 (29%), Positives = 199/409 (48%), Gaps = 51/409 (12%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 63 LWAKAPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 122 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 123 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 180 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + P+ASV + RA++ A+ HLV++AV L G+VT++D +G Sbjct: 181 PSLFVREQKSPSASVTVTLEPGRALD---EGQISAVVHLVSSAVAGLPPGNVTLVDQSGH 237 Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT +N R++ L ++ I+ I L+ +G N + V A+L+ ++ Sbjct: 238 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 297 Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309 E Y P+ ++ S+ SE ++QP E+ + Sbjct: 298 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 357 Query: 310 QNMPHVS---DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 QN P S + PRS + + E SNYE++ T + +ERLS+AVVVN Sbjct: 358 QNTPQTSTSTNSNSAGPRSTQ----RNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYK 413 Query: 367 RLTE--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 L + L +ADQ K +I + A G + +RGDT+ + + F Sbjct: 414 TLADGKPLPLTADQMK------QIEDLTREAMGFSDKRGDTLNVVNSPF 456 >gi|326622865|gb|EGE29210.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 531 Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 127/430 (29%), Positives = 208/430 (48%), Gaps = 52/430 (12%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 15 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 74 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 75 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 132 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + P+ASV + RA++ A+ HLV++AV L G+VT++D +G Sbjct: 133 PSLFVREQKSPSASVTVTLEPGRALDEG---QISAVVHLVSSAVAGLPPGNVTLVDQSGH 189 Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT +N R++ L ++ I+ I L+ +G N + V A+L+ ++ Sbjct: 190 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 249 Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309 E Y P+ ++ S+ SE ++QP E+ + Sbjct: 250 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 309 Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369 QN P S NT ++ E SNYE++ T + +ERLS+AVVVN L Sbjct: 310 QNTPQTSTSTNSNSAGPRNT-QRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLA 368 Query: 370 E--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG----- 422 + L +ADQ + +I + A G + +RGDT+ + + F + + N+G Sbjct: 369 DGKPLPLTADQ------MKQIEDLTREAMGFSDKRGDTLNVVNSPF--SAVDNTGGELPF 420 Query: 423 TVQVSFMDIL 432 Q SF+D L Sbjct: 421 WQQQSFIDQL 430 >gi|17548611|ref|NP_521951.1| flagellar M-ring transmembrane protein [Ralstonia solanacearum GMI1000] gi|17430859|emb|CAD17541.1| probable flagellar m-ring transmembrane protein [Ralstonia solanacearum GMI1000] Length = 611 Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 138/483 (28%), Positives = 230/483 (47%), Gaps = 77/483 (15%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y LY + SD I AL + N+ +R +D GS+I VP + V +AR+ LAAQ Sbjct: 66 LWSRAPSYRVLYSNVADSDGGAIIAALQQMNVPYRFADGGSAIMVPEANVHEARLKLAAQ 125 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP +G+EL + FG + F++++ RALEGE+ARTIQ++ + +ARVH+ + Sbjct: 126 GLPKGGL-AGFELMEN-QKFGTSQFVEQVNYQRALEGELARTIQAMQEVQSARVHLALSK 183 Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + +P+ASV+++ + P +AI HL+A++VP+L + +VTV+D +G+LL Sbjct: 184 PSVFVREQVKPSASVLLK-LYPGRMLDRSQVQAIGHLLASSVPDLPLANVTVVDQSGRLL 242 Query: 218 TANEMERNILG---KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQI 273 +A+ + N G L+ V+ I+ I L +G DN R+ V A +++D T+Q+ Sbjct: 243 SAS-FQDNASGLDPTQLNYVRDIEQGYIKRIEAILGPVVGEDNVRAQVTANVDLDNTEQM 301 Query: 274 REIV---YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE--- 327 E DP + RS S+ Q +Q N P + R +P + Sbjct: 302 AETYRPNQDPANGAVRSTHTSESTQNKAGAQ-GGVPGALSNQPPTAPRMLPTAPAPAAQQ 360 Query: 328 ------------------------------NTDKKEEQSNYEINTKSIATTHDNYKLERL 357 + ++ NYE++ T + RL Sbjct: 361 AAAGQNGQNGQNGQQQGAAAGTGQAAANTAESSARDTTINYEVDKTVRRTRAAVGTVRRL 420 Query: 358 SIAVVVN---KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 S+AVVVN G+ + L D+ + ++N +V A G +++RGD++ + + F Sbjct: 421 SVAVVVNYRADGKTWKPLS--------DAEMTKLNALVKDAVGYDAKRGDSVNVVNSQF- 471 Query: 415 ENQLFNSGTVQVSFMDI-LSR-----HFATVINALVF---LVGTLLVTFLGLHALRRLHN 465 SGT+ S D+ L + H+A I A + +G L++ F + L R N Sbjct: 472 ------SGTLPTSKDDLPLWKQPEMIHYA--IQAAKYGALAIGFLILVFAVIRPLIRSMN 523 Query: 466 IDD 468 D Sbjct: 524 KKD 526 >gi|146278778|ref|YP_001168937.1| flagellar MS-ring protein [Rhodobacter sphaeroides ATCC 17025] gi|145557019|gb|ABP71632.1| flagellar M-ring protein FliF [Rhodobacter sphaeroides ATCC 17025] Length = 543 Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 120/399 (30%), Positives = 206/399 (51%), Gaps = 18/399 (4%) Query: 18 GRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS 77 GR R +++ + + + +F ++F N P LY L+ + + AL + + + Sbjct: 26 GRRRAIVVGATAAMFLAIFGLSQF-ANKPRMALLYAGLQGAVAGEVVAALEAQGVAYEV- 83 Query: 78 DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137 G SI V +S + R+ LA +GLP++ + +GYEL D ++ FG TS M + +RA EG Sbjct: 84 -QGDSIHVDASRRDELRMKLAGEGLPATGT-AGYELLDGLSGFGTTSQMFDAAYLRAKEG 141 Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV-YKSAEAIRHLVA 196 E+ARTI + + AARVHI P + RPTASV + ++ + A A +HL+A Sbjct: 142 ELARTILASPQVKAARVHIA-PAAAQLFQRERRPTASVTVTTSGGNLTMEQARAFKHLIA 200 Query: 197 AAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVD 256 +AV + DV+V+D+ G L+ A + I G + + E+ N+ + L A +G Sbjct: 201 SAVAGMQPEDVSVIDTVGGLIRAGDTGDGIAGTAGTRA----AELRRNVERLLEARVGPG 256 Query: 257 NFRSAVVAELNMDT--QQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPH 314 R+ V L+++T + I E +DP +V S L + + S ++QP VTV N+P Sbjct: 257 --RAVVEVSLDVETASETIVEKTFDPKGRVPISSELQE--KTSSSTQPAPDVTVASNLPE 312 Query: 315 VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR 374 +S N+ + E +N+E++ + RL++AV+V+ R+ G+ Sbjct: 313 GDAAGGSAGKS--NSSETRETTNFEVSQTQRELVRQPGTVRRLTVAVLVDGVRMAGEDGQ 370 Query: 375 SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 Q + + LA + ++V AA G++ RGD +T+ S+ F Sbjct: 371 LTWQPRPEEELAVLRELVGAAVGLDESRGDRLTLRSLIF 409 >gi|317492408|ref|ZP_07950837.1| flagellar M-ring protein FliF [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919747|gb|EFV41077.1| flagellar M-ring protein FliF [Enterobacteriaceae bacterium 9_2_54FAA] Length = 573 Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 151/556 (27%), Positives = 261/556 (46%), Gaps = 79/556 (14%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + SP Y LY + D I L++ NI +R +DNG+++ +P+ V + R+ LA QG Sbjct: 52 WAKSPDYRVLYSNISDRDGGAIVTQLTQMNIPYRFADNGTALLIPADKVHETRLRLAQQG 111 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP + G+EL D+ FG++ F ++I RALEGE++RTI+++ + ARVH+ +P Sbjct: 112 LPKGGA-VGFELLDQ-EKFGISQFSEQINYQRALEGELSRTIETLGPVQTARVHLALPKP 169 Query: 162 GSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 F + +P+ASV + RA++ AI ++V+++V L G+VTV+D G L Sbjct: 170 SLFVREQKQPSASVTLNLQPGRALD---EGQINAIVYMVSSSVAGLPAGNVTVVDQGGHL 226 Query: 217 LTANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LT ++ R++ L ++ I+ I L +G N + V A+++ ++ + Sbjct: 227 LTQSDGTGRDLNATQLKYANEVESRIQRRIEAILQPMVGNGNVHAQVTAQIDNAVREQTD 286 Query: 276 IVYDPDSKVERSI--------------RLSKDAQRSETSQPESAVTVEQNMP-------- 313 Y P+ ++ +LS + T+QP A T P Sbjct: 287 EEYKPNQAPNQAAVRSQQLSDSSQSGGQLSGGVPGALTNQPAPAATGNITNPPQAGGANA 346 Query: 314 HVSDRKVPLPRSLENTD---------KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 + ++ + P +++ +++E NYE++ T ++RLS+AVVVN Sbjct: 347 NTANAQRPASSTIDTNGRRSSSASNARRDETINYEVDRTIRHTQQKAGNVDRLSVAVVVN 406 Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424 T G+S L ++ +V A G ++ RGDT+ + + F + SG V Sbjct: 407 Y--TTNASGKSIP--LTPQQLEQVTALVREAMGFSATRGDTLNVVNTPFTTS-AEESGDV 461 Query: 425 ----QVSFMDI---LSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 Q SF D+ L R+ +I + F++ LV L L+ ++L N A++ E Sbjct: 462 PFWQQSSFFDLLMTLGRYLLVLI--VAFILWRKLVKPL-LN--KQLANAQPARRVE---- 512 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 P PI VTT + P SN++I + R Q R ++Q R+ M E Sbjct: 513 ----PTPI---VTTPVQP-----AKPSNEEI-QNRRKSQQRA---TAEQQAQRVRDMAEQ 556 Query: 538 NEERFAKILRKWARSE 553 + A ++R+W +E Sbjct: 557 DPRVVALVIRQWMSNE 572 >gi|238912458|ref|ZP_04656295.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 560 Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 122/409 (29%), Positives = 199/409 (48%), Gaps = 51/409 (12%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 44 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 103 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 104 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 161 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + P+ASV + RA++ A+ HLV++AV L G+VT++D +G Sbjct: 162 PSLFVREQKSPSASVTVTLEPGRALD---EGQISAVVHLVSSAVAGLPPGNVTLVDQSGH 218 Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT +N R++ L ++ I+ I L+ +G N + V A+L+ ++ Sbjct: 219 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 278 Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309 E Y P+ ++ S+ SE ++QP E+ + Sbjct: 279 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 338 Query: 310 QNMPHVS---DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 QN P S + PRS + + E SNYE++ T + +ERLS+AVVVN Sbjct: 339 QNTPQTSTSTNSNNAGPRSTQ----RNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYK 394 Query: 367 RLTE--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 L + L +ADQ K +I + A G + +RGDT+ + + F Sbjct: 395 TLADGKPLPLTADQMK------QIEDLTREAMGFSDKRGDTLNVVNSPF 437 >gi|213419965|ref|ZP_03353031.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 551 Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 128/430 (29%), Positives = 208/430 (48%), Gaps = 52/430 (12%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 44 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 103 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 104 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 161 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + P+ASV + RA++ A+ HLV++AV L G+VT++D +G Sbjct: 162 PSLFVREQKSPSASVTVTLEPGRALD---EGQISAVVHLVSSAVAGLPPGNVTLVDQSGH 218 Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT +N R++ L ++ I+ I L+ +G N + V A+L+ ++ Sbjct: 219 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 278 Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309 E Y P+ ++ S+ SE ++QP E+ + Sbjct: 279 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 338 Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369 QN P S NT ++ E SNYE++ T + +ERLS+AVVVN L Sbjct: 339 QNTPQTSTSTNSNNAGPRNT-QRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLA 397 Query: 370 E--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG----- 422 + L +ADQ K +I + A G + +RGDT+ + + F + + N+G Sbjct: 398 DGKPLPLTADQMK------QIEDLTREAMGFSDKRGDTLNVVNSPF--SAVDNTGGELPF 449 Query: 423 TVQVSFMDIL 432 Q SF+D L Sbjct: 450 WQQQSFIDQL 459 >gi|213053157|ref|ZP_03346035.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|289829461|ref|ZP_06547073.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 531 Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 127/430 (29%), Positives = 208/430 (48%), Gaps = 52/430 (12%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 15 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 74 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 75 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 132 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + P+ASV + RA++ A+ HLV++AV L G+VT++D +G Sbjct: 133 PSLFVREQKSPSASVTVTLEPGRALDEG---QISAVVHLVSSAVAGLPPGNVTLVDQSGH 189 Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT +N R++ L ++ I+ I L+ +G N + V A+L+ ++ Sbjct: 190 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 249 Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309 E Y P+ ++ S+ SE ++QP E+ + Sbjct: 250 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 309 Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369 QN P S NT ++ E SNYE++ T + +ERLS+AVVVN L Sbjct: 310 QNTPQTSTSTNSNNAGPRNT-QRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLA 368 Query: 370 E--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG----- 422 + L +ADQ + +I + A G + +RGDT+ + + F + + N+G Sbjct: 369 DGKPLPLTADQ------MKQIEDLTREAMGFSDKRGDTLNVVNSPF--SAVDNTGGELPF 420 Query: 423 TVQVSFMDIL 432 Q SF+D L Sbjct: 421 WQQQSFIDQL 430 >gi|197249147|ref|YP_002146054.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197212850|gb|ACH50247.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 579 Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 128/430 (29%), Positives = 208/430 (48%), Gaps = 52/430 (12%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 63 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 122 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 123 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 180 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + P+ASV + RA++ A+ HLV++AV L G+VT++D +G Sbjct: 181 PSLFVREQKSPSASVTVTLEPGRALD---EGQISAVVHLVSSAVAGLPPGNVTLVDQSGH 237 Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT +N R++ L ++ I+ I L+ +G N + V A+L+ ++ Sbjct: 238 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 297 Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309 E Y P+ ++ S+ SE ++QP E+ + Sbjct: 298 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 357 Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369 QN P S NT ++ E SNYE++ T + +ERLS+AVVVN L Sbjct: 358 QNTPQTSTSTNSNNAGPRNT-QRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLA 416 Query: 370 E--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG----- 422 + L +ADQ K +I + A G + +RGDT+ + + F + + N+G Sbjct: 417 DGKPLPLTADQMK------QIEDLTREAMGFSDKRGDTLNVVNSPF--SAVDNTGGELPF 468 Query: 423 TVQVSFMDIL 432 Q SF+D L Sbjct: 469 WQQQSFIDQL 478 >gi|120613031|ref|YP_972709.1| flagellar M-ring protein FliF [Acidovorax citrulli AAC00-1] gi|120591495|gb|ABM34935.1| flagellar M-ring protein FliF [Acidovorax citrulli AAC00-1] Length = 566 Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 118/393 (30%), Positives = 194/393 (49%), Gaps = 28/393 (7%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSS 105 P Y L+ L D I LS N+ ++ S+ G +I VP+ V R+ LA QGLP Sbjct: 56 PDYKVLFSNLSDKDGGAIVAQLSTMNVPYKYSEGGGAILVPAERVHDVRLRLATQGLPKG 115 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 S +G+EL + N FG+T F + + R LEGE+ R+IQ++S + +ARVH+ +P+ F Sbjct: 116 SV-TGFELME-TNRFGVTQFQERLNFQRGLEGELTRSIQALSSVQSARVHLALPNQNGFF 173 Query: 166 KIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE- 221 + +P+ASV++ ++ P + I HLVA++VP + V+VLD TGKLL+ + Sbjct: 174 REQQKPSASVLL-SLYPGRFLDRTQLAGIVHLVASSVPEMSPSAVSVLDDTGKLLSQSPD 232 Query: 222 --MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM----DTQQIRE 275 I + LS VQ I+ + I L +G +N ++ V AE++ T + Sbjct: 233 TAAGSAIDAQQLSYVQQIEQQYTRRILDILEPVVGKNNVKAQVTAEVDFSQSEQTSEQHR 292 Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAV--TVEQNMPHVSDRKV----PLPRSLENT 329 PDS RS ++ + + ++ +QP + V P S + P P + Sbjct: 293 PNQTPDSSAVRSQQVVESSGGTQGNQPPAGVPGAASNQPPQPSTAPINGANPAPTAGNGQ 352 Query: 330 D------KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK--I 381 K+E +NYE++ T + ++R+S AVVVN + + G+ A Q K Sbjct: 353 QGQAAGSKRESITNYEVDKTVRVTRAGSGAIKRVSAAVVVNYQAIADAAGK-APQAKAFT 411 Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 + ++ +V G + RGD++ I + FL Sbjct: 412 PEQIEQMTALVRETIGYSKDRGDSVNIMNTQFL 444 >gi|161613462|ref|YP_001587427.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161362826|gb|ABX66594.1| hypothetical protein SPAB_01179 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 531 Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 127/430 (29%), Positives = 208/430 (48%), Gaps = 52/430 (12%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 15 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 74 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 75 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 132 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + P+ASV + RA++ A+ HLV++AV L G+VT++D +G Sbjct: 133 PSLFVREQKSPSASVTVTLEPGRALDEG---QISAVVHLVSSAVAGLPPGNVTLVDQSGH 189 Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT +N R++ L ++ I+ I L+ +G N + V A+L+ ++ Sbjct: 190 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 249 Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309 E Y P+ ++ S+ SE ++QP E+ + Sbjct: 250 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 309 Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369 QN P S NT ++ E SNYE++ T + +ERLS+AVVVN L Sbjct: 310 QNTPQTSTSTNSNNAGPRNT-QRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLA 368 Query: 370 E--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG----- 422 + L +ADQ + +I + A G + +RGDT+ + + F + + N+G Sbjct: 369 DGKPLPLTADQ------MKQIEDLTREAMGFSDKRGDTLNVVNSPF--SAVDNTGGELPF 420 Query: 423 TVQVSFMDIL 432 Q SF+D L Sbjct: 421 WQQQSFIDQL 430 >gi|283785708|ref|YP_003365573.1| flagellar M-ring protein [Citrobacter rodentium ICC168] gi|282949162|emb|CBG88770.1| flagellar M-ring protein [Citrobacter rodentium ICC168] Length = 560 Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 127/427 (29%), Positives = 205/427 (48%), Gaps = 53/427 (12%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V I++ M + SP Y L+ L D I L++ NI +R ++ + Sbjct: 28 LIIAGSAAVAIIVAMV--LWAKSPDYRTLFSNLSDQDGGAIVTQLTQMNIPYRFTEGSGA 85 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE+ART Sbjct: 86 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELART 143 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAA 197 I+++ + ARVH+ MP F + P+ASV I RA++ A+ HLV++ Sbjct: 144 IETLGPVRRARVHLAMPKPSLFVREQKSPSASVTINLEPGRALDEG---QISAVVHLVSS 200 Query: 198 AVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVD 256 AV L G+VT++D +G+LLT +N R++ L +++ I+ I L+ +G Sbjct: 201 AVAGLPPGNVTLVDQSGRLLTQSNTSSRDLNDAQLKYASDVENRIQRRIESILSPIVGNG 260 Query: 257 NFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE--------------TSQP 302 N + V A+L+ ++ E Y P+ ++ S+ SE ++QP Sbjct: 261 NVHAQVTAQLDFANKEQTEEQYRPNGDASQAALRSRQVNESEQIGSGLPGGVPGALSNQP 320 Query: 303 ESAVTVEQNMP--------------HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 A P S PR NT ++ E SNYE++ T Sbjct: 321 APANAAPITTPPANQQNAQNGQNAQQTSTNNAVGPR---NT-QRNETSNYEVDRTIRHTK 376 Query: 349 HDNYKLERLSIAVVVNKGRLTE--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 + ++RLS+AVVVN ++ L +ADQ K +I + A G + +RGDT+ Sbjct: 377 MNVGDIQRLSVAVVVNYKTPSDGKPLPLTADQMK------QIENLTREAMGFSDKRGDTL 430 Query: 407 TITSMDF 413 + + F Sbjct: 431 NVVNSPF 437 >gi|207856518|ref|YP_002243169.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206708321|emb|CAR32624.1| flagellar basal-body M-ring protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 560 Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 121/406 (29%), Positives = 197/406 (48%), Gaps = 45/406 (11%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 44 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 103 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 104 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 161 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + P+ASV + RA++ A+ HLV++AV L G+VT++D +G Sbjct: 162 PSLFVREQKSPSASVTVTLEPGRALDEG---QISAVVHLVSSAVAGLPPGNVTLVDQSGH 218 Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT +N R++ L ++ I+ I L+ +G N + V A+L+ ++ Sbjct: 219 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 278 Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309 E Y P+ ++ S+ SE ++QP E+ + Sbjct: 279 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 338 Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369 QN P S NT ++ E SNYE++ T + +ERLS+AVVVN L Sbjct: 339 QNTPQTSTSTNSNSAGPRNT-QRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLA 397 Query: 370 E--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 + L +ADQ K +I + A G + +RGDT+ + + F Sbjct: 398 DGKPLPLTADQMK------QIEDLTREAMGFSDKRGDTLNVVNSPF 437 >gi|29141395|ref|NP_804737.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213646788|ref|ZP_03376841.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|29137022|gb|AAO68586.1| flagellar basal-body M-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 560 Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 128/430 (29%), Positives = 208/430 (48%), Gaps = 52/430 (12%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 44 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 103 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 104 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 161 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + P+ASV + RA++ A+ HLV++AV L G+VT++D +G Sbjct: 162 PSLFVREQKSPSASVTVTLEPGRALDEG---QISAVVHLVSSAVAGLPPGNVTLVDQSGH 218 Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT +N R++ L ++ I+ I L+ +G N + V A+L+ ++ Sbjct: 219 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 278 Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309 E Y P+ ++ S+ SE ++QP E+ + Sbjct: 279 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 338 Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369 QN P S NT ++ E SNYE++ T + +ERLS+AVVVN L Sbjct: 339 QNTPQTSTSTNSNNAGPRNT-QRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLA 397 Query: 370 E--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG----- 422 + L +ADQ K +I + A G + +RGDT+ + + F + + N+G Sbjct: 398 DGKPLPLTADQMK------QIEDLTREAMGFSDKRGDTLNVVNSPF--SAVDNTGGELPF 449 Query: 423 TVQVSFMDIL 432 Q SF+D L Sbjct: 450 WQQQSFIDQL 459 >gi|268316357|ref|YP_003290076.1| flagellar M-ring protein FliF [Rhodothermus marinus DSM 4252] gi|262333891|gb|ACY47688.1| flagellar M-ring protein FliF [Rhodothermus marinus DSM 4252] Length = 533 Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 126/418 (30%), Positives = 192/418 (45%), Gaps = 42/418 (10%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + +QL QF + L + L L +V + I+L + ++ P Y L+ L SD +R Sbjct: 1 MFEQLKQFL---SRLSPGQRLALGAVTIGSILLLLGIAYWAGRPEYALLFGGLSPSDASR 57 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L E N+ +++ + G++I VP V + R+ A +GL S GYELFD+ N+ G+ Sbjct: 58 IVETLQEENVPYQLKEGGTAIWVPRDRVYELRLRFAGEGL-VSDGPVGYELFDQ-NTLGM 115 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T FMQ + RALEGE+ARTI S+ + A+VH+V+P+ FR+ P+ASV++ + Sbjct: 116 TDFMQRLNYKRALEGELARTIMSLQQVELAKVHLVLPERSPFRETQVAPSASVLLSLKSG 175 Query: 183 S--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAI 237 + + + I LVA AV LD +VTVLD+ G LL+ A E + L + QA+ Sbjct: 176 ARLTEEQIDGITALVAGAVEGLDPANVTVLDARGNLLSNPDAGNAELALSSTQLKLRQAL 235 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK-VERSIRLSKDAQR 296 + + L LG N V A LN D + DP+S V RL + Sbjct: 236 EAHLTEKGQSMLDRVLGPGNAIVRVSATLNFDQAVTERQLIDPESATVISEERLEEAGTG 295 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 E S S V NYE++ + +E Sbjct: 296 GEGSSASSMV-----------------------------RNYELSRTVERIQQNGGDVEY 326 Query: 357 LSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 L+++V++N+ R E G + + L EI ++V A G RGD I F Sbjct: 327 LTVSVILNQ-RFEEGPDGTPQPRPYTEDELREIEELVKNAVGFRPERGDRFAIHQTRF 383 >gi|161502909|ref|YP_001570021.1| flagellar MS-ring protein [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864256|gb|ABX20879.1| hypothetical protein SARI_00968 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 560 Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 124/424 (29%), Positives = 204/424 (48%), Gaps = 47/424 (11%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V I++ M + +P Y L+ L D I L++ NI +R ++ + Sbjct: 28 LIVAGSAAVAIIVAMV--LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGA 85 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE+ART Sbjct: 86 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELART 143 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAA 197 I+++ + +ARVH+ MP F + P+ASV + RA++ A+ HLV++ Sbjct: 144 IETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEG---QISAVVHLVSS 200 Query: 198 AVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVD 256 AV L G+VT++D +G LLT +N R++ L ++ I+ I L+ +G Sbjct: 201 AVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNG 260 Query: 257 NFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMP 313 N + V A+L+ ++ E Y P+ ++ S+ SE P N P Sbjct: 261 NVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQIGAGYPGGVPGALSNQP 320 Query: 314 HVSDRKVPL---PRSLENTD-------------------KKEEQSNYEINTKSIATTHDN 351 + + P+ P + +N ++ E SNYE++ T + Sbjct: 321 APPN-EAPIATPPGNQQNAQNTAQTSTSTNSNSTGPRNTQRNETSNYEVDRTIRHTKMNV 379 Query: 352 YKLERLSIAVVVNKGRLTE--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 +ERLS+AVVVN L + L +ADQ K +I + A G + +RGDT+ + Sbjct: 380 GDIERLSVAVVVNYKTLADGKPLPLTADQMK------QIEDLTREAMGFSDKRGDTLNVV 433 Query: 410 SMDF 413 + F Sbjct: 434 NSPF 437 >gi|56413118|ref|YP_150193.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362044|ref|YP_002141681.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127375|gb|AAV76881.1| flagellar basal-body M-ring protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093521|emb|CAR58982.1| flagellar basal-body M-ring protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 563 Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 121/406 (29%), Positives = 197/406 (48%), Gaps = 45/406 (11%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 47 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 106 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 107 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 164 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + P+ASV + RA++ A+ HLV++AV L G+VT++D +G Sbjct: 165 PSLFVREQKSPSASVTVTLEPGRALDEG---QISAVVHLVSSAVAGLPPGNVTLVDQSGH 221 Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT +N R++ L ++ I+ I L+ +G N + V A+L+ ++ Sbjct: 222 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 281 Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309 E Y P+ ++ S+ SE ++QP E+ + Sbjct: 282 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 341 Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369 QN P S NT ++ E SNYE++ T + +ERLS+AVVVN L Sbjct: 342 QNTPQTSTSTNSNNAGPRNT-QRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLA 400 Query: 370 E--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 + L +ADQ K +I + A G + +RGDT+ + + F Sbjct: 401 DGKPLPLTADQMK------QIEDLTREAMGFSDKRGDTLNVVNSPF 440 >gi|254474533|ref|ZP_05087919.1| flagellar M-ring protein FliF [Ruegeria sp. R11] gi|214028776|gb|EEB69611.1| flagellar M-ring protein FliF [Ruegeria sp. R11] Length = 558 Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 137/447 (30%), Positives = 221/447 (49%), Gaps = 24/447 (5%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 R R++ + + ++V I+ +A N+P LY LE + AL + + + Sbjct: 14 RKRLIAVGATVIV-ILSVLAMSRVANTPTMQLLYAGLESGSAGDVVRALDQRGTQYEV-- 70 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 G SI VP++ + R+ LA++GLP++ GYEL D ++ FG TS M + RA EGE Sbjct: 71 RGGSIYVPATERDELRMTLASEGLPANGGR-GYELLDSLSGFGTTSQMFDAAYWRAKEGE 129 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN-PSVYKSAEAIRHLVAA 197 +ARTI + + ARVHI F++ A PTASV + + P + A AIR LV++ Sbjct: 130 LARTIVASPHVTQARVHIANTGSNPFQRT-AEPTASVSVVPMGSPITPQQANAIRFLVSS 188 Query: 198 AVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDN 257 AV L + +V V+D+ G L+ + E + QAI+ + + + A +G N Sbjct: 189 AVTGLSVDNVAVIDANGALIGSPEAAAAAGAGTDDRSQAIRE----RVMRLVEARVGHGN 244 Query: 258 FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA-VTVEQNMPHVS 316 V E DT+ IRE DP+S+V S + +R+++SQ +S VTV N+P Sbjct: 245 AVVEVSVETVTDTESIREKRVDPESRVAISTDVE---ERADSSQNQSGEVTVASNIPD-- 299 Query: 317 DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA 376 S +T E+ NYEI+ ++RL++AV++N T G + Sbjct: 300 GDAASGDGSKASTSATRERVNYEISETEKEIIRGPGAIKRLTVAVLLNGVATTNAAGETV 359 Query: 377 DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF--LENQLFNSGTVQVSFMDILSR 434 + + + L + +++SAA G ++ RGD IT+ SM+ +E Q GTV S IL Sbjct: 360 MEPRSEEELGALRELISAAVGFSADRGDVITLKSMEMPTIEPQ----GTVVSS--SILDN 413 Query: 435 HFATVINALVFLVGTLLVTFLGLHALR 461 + ++ + L+ LGL +R Sbjct: 414 IYLDAMSLIQMAALALVTLILGLFVIR 440 >gi|259908758|ref|YP_002649114.1| flagellar MS-ring protein [Erwinia pyrifoliae Ep1/96] gi|224964380|emb|CAX55889.1| Flagellar basal-body M-ring protein [Erwinia pyrifoliae Ep1/96] gi|283478734|emb|CAY74650.1| Flagellar M-ring protein FliF [Erwinia pyrifoliae DSM 12163] Length = 569 Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 143/554 (25%), Positives = 256/554 (46%), Gaps = 70/554 (12%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y L+ L D I L++ N+ ++ D G ++ VP++ V + R+ LA+Q Sbjct: 46 LWAKQPDYRVLFSNLSNEDGGTIVTQLTQMNVPYKFDDQGGALLVPAAQVHELRLRLASQ 105 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL DK FG++ F +++ RALEGE+ARTI ++ + ARVH+ MP Sbjct: 106 GLPKGGA-VGFELLDK-EKFGISQFSEQVNYQRALEGELARTISTLGPVKDARVHLAMPK 163 Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + P+ASV + A+ P A+ H+V+++V + G+VTV+D G+LL Sbjct: 164 PTLFVREQKSPSASVTL-ALQPGRALDEGQINAVVHMVSSSVAGMPPGNVTVVDQAGRLL 222 Query: 218 TANEM-ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 T N+ R++ L ++ + I L LG N + V A+++ + ++ + Sbjct: 223 TQNDPGGRDLNDTQLKYANDVETRYQQRIEAILGPILGNGNVHAQVTAQIDFNKREKTDE 282 Query: 277 VYDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPHVSDRKVPLP---------- 323 Y P+S+ ++ S+ SE SA V N P ++ P Sbjct: 283 QYSPNSQPDQQAIRSRQTSNSEQLGGSSAGGVPGALSNQPAPANAAPVTPANNNANNANA 342 Query: 324 ----------------RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367 +++ + + + +NYE+N + T + +++RLS+AVVVN Sbjct: 343 NANNGQPANNAANAAQKTVPSNTRSDNTTNYEVNRTILHTKMNVGEVQRLSVAVVVNY-- 400 Query: 368 LTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG- 422 R+ GK D+ + +I + A G + +RGD++ + + F +N + Sbjct: 401 ------RADAAGKPIALKDAQIKQIENLTREAMGFSEQRGDSLNVVNSQFTDNSDLAAEL 454 Query: 423 --TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 Q +F+D L F LV +V +L L LRR + K E Sbjct: 455 PFWKQPAFIDQL---FNAGRWLLVLIVAFILYRKLVSPQLRR--KAEQQKATEEAA---- 505 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 I++A ++ ++ +A+ S ++D + R Q R+++ V Q R+ M E + Sbjct: 506 ----INAARSS--TRDEGVAV-SLSKDELNQERKSQHRMSAEVLSQ---RIREMSENDPR 555 Query: 541 RFAKILRKWARSEI 554 A ++R+W + E+ Sbjct: 556 VVALVIRQWMKDEL 569 >gi|205360167|ref|ZP_02835012.2| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205340693|gb|EDZ27457.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 579 Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 121/406 (29%), Positives = 197/406 (48%), Gaps = 45/406 (11%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 63 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 122 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 123 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 180 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + P+ASV + RA++ A+ HLV++AV L G+VT++D +G Sbjct: 181 PSLFVREQKSPSASVTVTLEPGRALD---EGQISAVVHLVSSAVAGLPPGNVTLVDQSGH 237 Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT +N R++ L ++ I+ I L+ +G N + V A+L+ ++ Sbjct: 238 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 297 Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309 E Y P+ ++ S+ SE ++QP E+ + Sbjct: 298 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 357 Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369 QN P S NT ++ E SNYE++ T + +ERLS+AVVVN L Sbjct: 358 QNTPQTSTSNNSNNAGPRNT-QRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLA 416 Query: 370 E--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 + L +ADQ K +I + A G + +RGDT+ + + F Sbjct: 417 DGKPLPLTADQMK------QIEDLTREAMGFSDKRGDTLNVVNSPF 456 >gi|238796932|ref|ZP_04640436.1| Flagellar M-ring protein [Yersinia mollaretii ATCC 43969] gi|238719192|gb|EEQ11004.1| Flagellar M-ring protein [Yersinia mollaretii ATCC 43969] Length = 563 Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 124/464 (26%), Positives = 218/464 (46%), Gaps = 52/464 (11%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 ++L + + L +A + +P Y LY + D I L++ N+ +R D G + Sbjct: 29 IVLLICVSAAVTLLIALLLWAKAPDYRVLYSNISDQDGGAIVAQLAQMNVPYRFEDRGGA 88 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP V +AR+ LA GLP S G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 89 IMVPVDKVYEARLKLAQLGLPKGGS-VGFELLDQ-EKFGISQFSEQVNFQRALEGELSRT 146 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I+++ + ARVH+ +P F + +ASV + N +S + AI +L+A+AVP Sbjct: 147 IETLGPVNGARVHLAIPKPSMFVREQKPSSASVTVNLSNGRSLESGQVSAISYLIASAVP 206 Query: 201 NLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRS 260 L+ +VT++D G LLT + + L ++ + + I LA +G +N ++ Sbjct: 207 GLNADNVTIVDQGGHLLT-QRGGQEVQTSQLKFTSEVEADFQQRIQSILAPIVGRNNVKA 265 Query: 261 AVVAELNMDTQQIREIVYDPDSKVER-SIRLSKDAQRSE--------------TSQPESA 305 V A+L+ T + + P++ ++ SIR S+ + SE ++QP + Sbjct: 266 QVTAQLDFTTHEQTAEQFQPNTASDKMSIR-SRQSSDSEQGSKNGVGGVPGALSNQPPTP 324 Query: 306 VTVEQNMP------------------HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 T P + P+P + ++++ +NYE++ Sbjct: 325 ATAPITQPVGAKEATPTTPTTPGAKGAATTVATPVPFN----NRRDNTTNYELDRTLTHI 380 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 +ERLS+AVVVN E + + + ++D +IN +V A G + RGDT+ Sbjct: 381 KRSAGSIERLSVAVVVNYLPAKEGVPAALSKAQMD----QINSLVKEAVGFSVERGDTVN 436 Query: 408 ITSMDF--LENQLFNSGTVQVSFMDIL---SRHFATVINALVFL 446 I + F +E ++ Q F+++L R+ I A F Sbjct: 437 IVNSLFSDVEEEVAPPFWKQAGFINLLMAAGRYLLVAIVAWFFW 480 >gi|237731986|ref|ZP_04562467.1| flagellar MS-ring protein [Citrobacter sp. 30_2] gi|226907525|gb|EEH93443.1| flagellar MS-ring protein [Citrobacter sp. 30_2] Length = 557 Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 115/402 (28%), Positives = 197/402 (49%), Gaps = 40/402 (9%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ N+ +R ++ +I VP+ V + R+ LA Q Sbjct: 44 LWAKAPDYRTLFSNLSDQDGGAIVTQLTQMNVPYRFTEGSGAIEVPADKVHELRLRLAQQ 103 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + ARVH+ MP Sbjct: 104 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKRARVHLAMPK 161 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + P+ASV + RA++ A+ HLV++AV L G+VT++D G Sbjct: 162 PSLFVREQKAPSASVTVNLEPGRALDEG---QISAVTHLVSSAVAGLPPGNVTLVDQAGH 218 Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT +N R++ L ++ ++ I L+ +G N + V A+L+ ++ Sbjct: 219 LLTQSNTSSRDLNDAQLKYASDVEGRVQRRIESILSPIVGNGNVHAQVTAQLDFANKEQT 278 Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQPESAVTVEQNMPHVSDRKV 320 E Y P+ +++ S+ SE ++QP A T P + + Sbjct: 279 EEQYRPNGDDSQAVLRSRQLNVSEQIGSGAPGGVPGALSNQPAPANTAPIANPPANQQNA 338 Query: 321 PLPRSLENTD-------KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTE--V 371 ++ N++ ++ E SNYE++ T + ++RLS+AVVVN L + Sbjct: 339 QTTQTANNSNNAGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGKP 398 Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 L +ADQ K +I + A G + +RGDT+ + + F Sbjct: 399 LPLTADQMK------QIEDLTREAMGFSDKRGDTLNVVNSPF 434 >gi|254466479|ref|ZP_05079890.1| flagellar M-ring protein FliF [Rhodobacterales bacterium Y4I] gi|206687387|gb|EDZ47869.1| flagellar M-ring protein FliF [Rhodobacterales bacterium Y4I] Length = 556 Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 142/448 (31%), Positives = 222/448 (49%), Gaps = 26/448 (5%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 R R++ + + +++ I+ +A + P LY LE + AL + + + Sbjct: 14 RKRLIAVGATVIM-ILSVIAMSHVASKPSMTLLYAGLESGSAGDVVRALEQRGTQYEV-- 70 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 GSSI VPS+ + R+ LA++GLP++ GYEL D ++ FG TS M + RA EGE Sbjct: 71 RGSSIYVPSTQRDELRMTLASEGLPANGGK-GYELLDSLSGFGTTSQMFDAAYWRAKEGE 129 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN-PSVYKSAEAIRHLVAA 197 +ARTI + + ARVHI + F++ PTASV I + P A AIR LV++ Sbjct: 130 LARTIVASPHVSQARVHIANTGLNPFQRT-VEPTASVSIVPMGSPITPAQANAIRFLVSS 188 Query: 198 AVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDN 257 AV L + +V V+D+ G L+ +++ + Q I+ + + + A +G N Sbjct: 189 AVTGLAVENVAVIDANGALIGSSDATAAAGAGTDDRSQTIRE----RVMRLVEARVGQGN 244 Query: 258 FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSD 317 V E DT+ IRE + DP S+V S + + A S E VTV N+P Sbjct: 245 AVVEVSVETVTDTESIREKLIDPKSRVAVSTDVEERADSSTNQAGE--VTVASNIPD--G 300 Query: 318 RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSAD 377 S NT E+ NYEI+ ++RL++AV++N +T G + Sbjct: 301 DAASGQGSKANTSATRERINYEISETEKEILRGPGAIKRLTVAVLINGTAVTNDAGETVF 360 Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF--LENQLFNSGTV-QVSFMDILSR 434 Q + + LA + +++SAA G ++ RGD IT+ SM+ +E Q GTV SF D L Sbjct: 361 QPRPEDELAAMRELISAAVGFDAERGDVITLKSMELPAVEPQ----GTVATASFFDNL-- 414 Query: 435 HFATVINALVFLVGTLLVTF-LGLHALR 461 +F + +LV + LV+ LGL +R Sbjct: 415 YFDAM--SLVQIGALALVSLILGLFVVR 440 >gi|320085412|emb|CBY95193.1| Flagellar M-ring protein [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 560 Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 121/406 (29%), Positives = 197/406 (48%), Gaps = 45/406 (11%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 44 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 103 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 104 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 161 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + P+ASV + RA++ A+ HLV++AV L G+VT++D +G Sbjct: 162 PSLFVREQKSPSASVTVTLEPGRALDEG---QISAVVHLVSSAVAGLPPGNVTLVDQSGH 218 Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT +N R++ L ++ I+ I L+ +G N + V A+L+ ++ Sbjct: 219 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 278 Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309 E Y P+ ++ S+ SE ++QP E+ + Sbjct: 279 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 338 Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369 QN P S NT ++ E SNYE++ T + +ERLS+AVVVN L Sbjct: 339 QNTPQTSTSNNSNNAGPRNT-QRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLA 397 Query: 370 E--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 + L +ADQ K +I + A G + +RGDT+ + + F Sbjct: 398 DGKPLPLTADQMK------QIEDLTREAMGFSDKRGDTLNVVNSPF 437 >gi|78485783|ref|YP_391708.1| flagellar M-ring protein FliF [Thiomicrospira crunogena XCL-2] gi|78364069|gb|ABB42034.1| Flagellar M-ring protein FliF [Thiomicrospira crunogena XCL-2] Length = 561 Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 124/463 (26%), Positives = 226/463 (48%), Gaps = 33/463 (7%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 K+ TSL + + L + + L + + S Y L+ ++ D+N + L + Sbjct: 22 LLKNLTSLSVAKQVSLVIALAASVALAIGIILWSQSASYTLLFGSMDAKDMNEVIQTLDQ 81 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 N+ ++I N +I VP+ V R+ LAAQG P + +GY++ D FG++ F + Sbjct: 82 ENVPYKIEQNSGAILVPNEQVHSLRLKLAAQGYPKQAP-TGYQILDIDQGFGISQFKETT 140 Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSV 184 RALEGE+A+++ SI+ + +ARV + MP F + PTASV + RA+N Sbjct: 141 RYQRALEGELAKSVSSINAVKSARVMLGMPKRSVFVRKQQEPTASVTVKLYPGRALN--- 197 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIE 242 + AI +LV++++PN+ VTV+D G LLT++ N+ K L + ++ + Sbjct: 198 EEQVSAIVYLVSSSIPNMKPKGVTVVDQQGNLLTSDSHSGIMNVSLKQLGYTRQVEDTLS 257 Query: 243 MNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE--- 298 I + L G D+ R+ V AEL+ Q+ Y+PD + RS + K+ R+E Sbjct: 258 QRIIRLLTPVAGGDHKVRAQVTAELDFTQQEQTRENYEPDPEAIRSEQEIKEINRNEGPM 317 Query: 299 ------TSQPESA-VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 T+QP A + E+ +D +L+N+ K+++ NYE++ + Sbjct: 318 GIPGALTNQPPRAGIAPEEGYKPEND------PNLKNS-KEKKTKNYELDRTVSHIKNSV 370 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 + RLS+AVV++ + G + + L ++VS A G++ RGDT++I + Sbjct: 371 GSIRRLSVAVVLDDKLTVDDNGDTVRTPLTEDELQRYRRLVSDAVGLDEARGDTLSIVNA 430 Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTF 454 F++ + + ++ F T++ ++ + L++ F Sbjct: 431 SFIQEKQEDFAGPEI----WEEPWFWTLVKQILAGLAVLIIIF 469 >gi|296103558|ref|YP_003613704.1| flagellar MS-ring protein [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058017|gb|ADF62755.1| flagellar MS-ring protein [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 559 Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 144/555 (25%), Positives = 253/555 (45%), Gaps = 79/555 (14%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + SP Y LY L D I L++ NI +R +DNG ++ VP+ V + R+ LA Q Sbjct: 44 LWAKSPDYRTLYSNLSDQDGGAIVTQLTQMNIPYRFADNGGALEVPADKVHELRLRLAQQ 103 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 104 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 161 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + P+ASV + RA++ A+ HLV++AV L G+VT++D +G Sbjct: 162 PSLFVREQKSPSASVTVNLEPGRALDEG---QISAVTHLVSSAVAGLPPGNVTLVDQSGH 218 Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT +N R++ L ++ ++ I L +G N + V A+++ ++ Sbjct: 219 LLTQSNTAGRDLNDAQLKYAADVEARLQRRIEAILGPVVGNSNVHAQVTAQIDFSNKEQT 278 Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQPESAVTVEQNMPHVSDRKV 320 E Y P+ +++ S+ +E ++QP A + P + + Sbjct: 279 EEQYRPNGDPAQAVMRSRQVNENEQVGGAYPGGVPGALSNQPAPANAAPISTPPANQQNG 338 Query: 321 PL-------------PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367 PR T+ + E +NYE++ T + ++RLS+AVVVN Sbjct: 339 QQNQQTTTSTASNAGPR----TNSRNETTNYEVDRTIRHTKLNVGDIQRLSVAVVVNYKT 394 Query: 368 LT--EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG--- 422 L + L +A+Q + +I + A G + +RGD++ + + F N + +G Sbjct: 395 LPNGKPLPLTAEQ------MKQIEDLTREAMGYSEKRGDSLNVVNSPF--NPVDETGGEL 446 Query: 423 --TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 Q +F+D L + LV +V LL L+R + A + ++ + Sbjct: 447 PFWQQQAFIDQL---MSAGRWLLVLIVAWLLWRKGVRPQLQRRAEAEKAAREQINARQ-- 501 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 + AV L ++ + +NQ R+ + V Q R+ M + + Sbjct: 502 ---EVEEAVEVRLSKDEQMQQRRANQ-----------RMGAEVMSQ---RIREMSDNDPR 544 Query: 541 RFAKILRKWARSEIE 555 A ++R+W +E E Sbjct: 545 VVALVIRQWMGNEHE 559 >gi|308273184|emb|CBX29787.1| hypothetical protein N47_F14820 [uncultured Desulfobacterium sp.] Length = 520 Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 134/465 (28%), Positives = 221/465 (47%), Gaps = 30/465 (6%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 D +QF SL + + ++ +L+ I F N Y L+ L D I Sbjct: 3 DSAVQFLNFIKSLPLAKKITISVTVLLLIAAFAVMFMLSNQVDYRVLFNNLSAQDAGAII 62 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L E NI ++I GS I VPS V + R+ + GLP G+E+FDK + + T Sbjct: 63 EKLKEKNIPYKIEGGGSLILVPSDQVYELRLKMVGDGLPRDGQ-IGFEIFDKTD-YKTTQ 120 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 F+Q + RAL+GE+ARTI + ++R+ IV+P F + +ASV++ + Sbjct: 121 FVQSLNYQRALQGELARTINCFDEVKSSRIFIVLPKETLFAEDTKPASASVLLDLKSNLP 180 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL----TANEMERNILGKSLSIVQAIQHE 240 + AI HLVA+AV L+ +VTV+D+ G+++ N+ + L I+ E Sbjct: 181 PERLSAIVHLVASAVEGLEPEEVTVVDTKGRVIFKGGNGNQTNTFLNNSQLDYKSKIESE 240 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I N+ L +G N V A+++ + + E YDP + V RS R +++ R+ + Sbjct: 241 ISRNVQSMLEGIIGSGNAIVRVTADIDFNKTSMNEEEYDPAAAVVRSKRDIEESFRAGNA 300 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ-SNYEINTKSIATTHDNYKLERLSI 359 ESA ++ V +P +N +K++ +NYEIN + + ++RLS+ Sbjct: 301 SSESAPSLINQRAGV----IPAESVDQNGKRKKDTLTNYEINKVTRVISKPAGTIKRLSV 356 Query: 360 AVVVNKGRLTEVLGRSADQ-------GKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 A V++ GR V +SAD + D L + IV A G N R D I+++S+ Sbjct: 357 AAVID-GRYETV--KSADGTDKRNYIPRTDEELKKFEDIVKGAMGYNEDREDKISVSSIP 413 Query: 413 FLENQLFNSGTVQVS-----FMDILSRHFATVINALVFLVGTLLV 452 F E+ G +Q++ FM +L + ++IN L+ V Sbjct: 414 FSESL---PGDIQMASEPFDFMALLKDYKNSLIN-FCLLIAVFFV 454 >gi|308187290|ref|YP_003931421.1| Flagellar M-ring protein [Pantoea vagans C9-1] gi|308057800|gb|ADO09972.1| Flagellar M-ring protein [Pantoea vagans C9-1] Length = 575 Score = 157 bits (396), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 135/468 (28%), Positives = 215/468 (45%), Gaps = 63/468 (13%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y LY L D I L++ NI +R ++NG ++ VP + V + R+ LA Q Sbjct: 47 LWAKQPSYSVLYNNLTDEDGGAIVTQLTQMNIPYRFAENGGALIVPEANVHELRLRLAQQ 106 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S G+EL DK FG++ F +++ RALEGE+ARTI+S+ + +ARVH+ MP Sbjct: 107 GLPKGGS-VGFELLDK-EKFGISQFSEQVNYQRALEGELARTIESLGPVKSARVHLAMPK 164 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + P+ASV + RA++ +AI H+V+++V L G+VTV+D TG+ Sbjct: 165 PTLFVREQKAPSASVTLTLQPGRALDEG---QIQAIAHMVSSSVAGLPPGNVTVVDQTGR 221 Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT ++ R++ L ++ + I L LG N + V A++N DT + Sbjct: 222 LLTRSDNAGRDLNDAQLKYSSEVEARYQQRIEAILNPILGQGNVHAQVTAQINFDTSEQT 281 Query: 275 EIVYDPDSKVERSIRLSKDAQRSETS--------------QPESAVTVEQNMP------- 313 + Y P++ + S+ S+ S QP A T P Sbjct: 282 DEKYQPNANPSNTAIRSRQTSTSDQSGSPYPGGVPGALSNQPAPANTAPVTTPNNNAANG 341 Query: 314 ------------HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIA 360 S ++++ NYE++ +SI T N ++RLS+A Sbjct: 342 QNANGQNNAANNASQTTSTAAASSAPTNSRRDDTVNYELD-RSIRHTKVNVGDVQRLSVA 400 Query: 361 VVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 VVVN R+ D+GK + L +I + A G + RGD++ + + F Sbjct: 401 VVVN--------FRADDKGKAVALNEQQLKQIEDLTREAMGYSQTRGDSVNVVNSQFNTT 452 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 + T + F S F ++NA +L+ LV F+ L R H Sbjct: 453 EAV---TADLPFWQQQS-FFDQLMNAGKWLL-IALVAFILYRKLVRPH 495 >gi|193222343|emb|CAL62027.2| Flagellar M-ring protein [Herminiimonas arsenicoxydans] Length = 562 Score = 157 bits (396), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 127/438 (28%), Positives = 208/438 (47%), Gaps = 56/438 (12%) Query: 18 GRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS 77 GR +L++ ++ +M+ + + P Y L+ D I +L AN+ ++ + Sbjct: 24 GRKFLLMVGVAAVIAVMIGLV--LWGQKPEYRVLFSNFSDRDGGAIMTSLQAANVPYKFA 81 Query: 78 DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137 + G +I VP+ V + R+ LAA+GLP S G+EL + G++ F++++ RALEG Sbjct: 82 EGGGAILVPADKVHEIRLKLAAEGLPKGGS-VGFELMEN-QKLGVSQFLEQVNFQRALEG 139 Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIR 192 E+AR+IQS+ + AARVH+ +P F + +PTASV++ R ++ + AI Sbjct: 140 ELARSIQSVGAVQAARVHLALPKASVFVRDQQKPTASVLLNLHAGRFLD---QQQVSAIV 196 Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKS-LSIVQAIQHEIEMNINKAL 249 HLVA++VP L +VT++D G LL+ N N L S L VQ +Q I I + Sbjct: 197 HLVASSVPELSPKNVTIVDQAGNLLSENNKPAGTNTLDPSQLKYVQELQQNIAKRIESII 256 Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPD----SKVERSIRLSKDAQRSE------- 298 +G++N R+ A+++ T + +Y P+ S RS + S+ S Sbjct: 257 TPIVGLNNVRAEATADVDFSTSEQAAEIYKPNQVPSSATVRSQQTSESTNGSNNATGVPG 316 Query: 299 --TSQPESAVTVEQN-MPHVSDRKVPLPRSLENTD-------------KKEEQSNYEINT 342 T+QP A T N P + +++ +NYE++ Sbjct: 317 ALTNQPAPAATAPLNTTPQTTAAPGTPGAPGTPGAPAATATAPQATPIQRDTTTNYEVDK 376 Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLA-------EINKIVSAA 395 L+RLS+AVVVN R V+G+ GK+ S+L +I +V A Sbjct: 377 TIRYVQQPMGGLKRLSVAVVVNYKR---VVGKD---GKV-SFLPLTEIEKTQITDLVREA 429 Query: 396 TGINSRRGDTITITSMDF 413 G N RGDT+ + + F Sbjct: 430 MGYNKDRGDTLNVVNSPF 447 >gi|134095076|ref|YP_001100151.1| flagellar MS-ring protein [Herminiimonas arsenicoxydans] Length = 545 Score = 157 bits (396), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 127/438 (28%), Positives = 208/438 (47%), Gaps = 56/438 (12%) Query: 18 GRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS 77 GR +L++ ++ +M+ + + P Y L+ D I +L AN+ ++ + Sbjct: 7 GRKFLLMVGVAAVIAVMIGLV--LWGQKPEYRVLFSNFSDRDGGAIMTSLQAANVPYKFA 64 Query: 78 DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137 + G +I VP+ V + R+ LAA+GLP S G+EL + G++ F++++ RALEG Sbjct: 65 EGGGAILVPADKVHEIRLKLAAEGLPKGGS-VGFELMEN-QKLGVSQFLEQVNFQRALEG 122 Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIR 192 E+AR+IQS+ + AARVH+ +P F + +PTASV++ R ++ + AI Sbjct: 123 ELARSIQSVGAVQAARVHLALPKASVFVRDQQKPTASVLLNLHAGRFLD---QQQVSAIV 179 Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKS-LSIVQAIQHEIEMNINKAL 249 HLVA++VP L +VT++D G LL+ N N L S L VQ +Q I I + Sbjct: 180 HLVASSVPELSPKNVTIVDQAGNLLSENNKPAGTNTLDPSQLKYVQELQQNIAKRIESII 239 Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPD----SKVERSIRLSKDAQRSE------- 298 +G++N R+ A+++ T + +Y P+ S RS + S+ S Sbjct: 240 TPIVGLNNVRAEATADVDFSTSEQAAEIYKPNQVPSSATVRSQQTSESTNGSNNATGVPG 299 Query: 299 --TSQPESAVTVEQN-MPHVSDRKVPLPRSLENTD-------------KKEEQSNYEINT 342 T+QP A T N P + +++ +NYE++ Sbjct: 300 ALTNQPAPAATAPLNTTPQTTAAPGTPGAPGTPGAPAATATAPQATPIQRDTTTNYEVDK 359 Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLA-------EINKIVSAA 395 L+RLS+AVVVN R V+G+ GK+ S+L +I +V A Sbjct: 360 TIRYVQQPMGGLKRLSVAVVVNYKR---VVGKD---GKV-SFLPLTEIEKTQITDLVREA 412 Query: 396 TGINSRRGDTITITSMDF 413 G N RGDT+ + + F Sbjct: 413 MGYNKDRGDTLNVVNSPF 430 >gi|325295413|ref|YP_004281927.1| flagellar M-ring protein FliF [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065861|gb|ADY73868.1| flagellar M-ring protein FliF [Desulfurobacterium thermolithotrophum DSM 11699] Length = 529 Score = 156 bits (395), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 130/432 (30%), Positives = 209/432 (48%), Gaps = 46/432 (10%) Query: 22 ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81 IL+L+++ LV + F+A + Y LY L D I L E +I +++ NGS Sbjct: 24 ILLLSALTLVSFLAFIAIKQSTTE-DYAVLYTHLSPDDAGSILSVLQEEHIPYKVEGNGS 82 Query: 82 SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 I VP V R+ LAA+GLP G+ELFD+ G+T F + + +RALEGEI R Sbjct: 83 IILVPKEKVYDIRLKLAAKGLPHGKV-VGFELFDE-PKLGITQFQENVEFLRALEGEIER 140 Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS---VYKSAEAIRHLVAAA 198 TI+ I+ I +V+I +P F + P AS+++ + P + +AI LV+ A Sbjct: 141 TIKRINAIQDVKVNIALPKDSIFVRESEEPKASILVN-LWPGRELTKEQVKAIVFLVSHA 199 Query: 199 VPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLG 254 VP L +VTV+D+ G++LT NE E K L + + ++ EIE I L+ LG Sbjct: 200 VPGLKPENVTVIDNRGRVLTDLLSGNEDETG-SSKELEVKRKLEKEIERKIQSMLSQVLG 258 Query: 255 VDNFRSAVVAELNMDTQQIREIVYDPDSKV---ERSIRLSKDAQRSETS-QPESAVTVEQ 310 E+ + +E +YDPD ER I Q ET +P+ EQ Sbjct: 259 SGKVVVRASVEIETGRLEKKEELYDPDMTAVVSERKI------QEKETGIKPK-----EQ 307 Query: 311 NMPHVSDRKVPL-----PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365 +P + P+ + +KK+ +NY+++ T +K++R+S+ V+V+ Sbjct: 308 GVPGTTTNVPPVLNLNQGNEILKKEKKDVTTNYDVSKTIQKTITPIFKIKRISVGVLVD- 366 Query: 366 GRLTEVLGRSAD---------QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 G+ + ++ + Q +I +Y +IV +A G + +RGDT+T+ S+ F Sbjct: 367 GKYQKEKDKAGNEIIKFVPRSQEEIKTY----EEIVKSAIGYDPKRGDTVTVASVPFEAK 422 Query: 417 QLFNSGTVQVSF 428 Q Q F Sbjct: 423 QFVQKEKSQKKF 434 >gi|288549808|ref|ZP_05968261.2| flagellar M-ring protein FliF [Enterobacter cancerogenus ATCC 35316] gi|288317495|gb|EFC56433.1| flagellar M-ring protein FliF [Enterobacter cancerogenus ATCC 35316] Length = 543 Score = 156 bits (395), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 117/408 (28%), Positives = 194/408 (47%), Gaps = 50/408 (12%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + SP Y LY L D I L++ NI +R +DNG ++ VP+ V + R+ LA Q Sbjct: 28 LWAKSPDYRTLYSNLSDQDGGAIVTQLTQMNIPYRFADNGGALEVPADKVHELRLRLAQQ 87 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 88 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 145 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + P+ASV + RA++ A+ HLV++AV L G+VT++D +G Sbjct: 146 PSLFVREQKSPSASVTVNLEPGRALDEG---QISAVTHLVSSAVAGLPPGNVTLVDQSGH 202 Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT +N R++ L ++ ++ I L +G N + V A+++ ++ Sbjct: 203 LLTQSNSAGRDLNDAQLKYAADVEGRLQRRIEAILGPVVGSSNVHAQVTAQIDFANKEQT 262 Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQPESAVTVEQNMPH------ 314 E Y P+ +++ S+ +E ++QP A P Sbjct: 263 EEQYSPNGNPSQAVMRSRQVNENEQVGGPYPGGVPGALSNQPAPANAAPITTPAANQQNG 322 Query: 315 -------VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367 S PR T + E +NYE++ T + ++RLS+AVVVN Sbjct: 323 QQNNAQTTSTAASSGPR----TSSRNETTNYEVDRTIRHTKLNVGDVQRLSVAVVVNYKT 378 Query: 368 LTE--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 L + L + +Q K +I + A G + +RGDT+ + + F Sbjct: 379 LPDGKPLPLTTEQMK------QIEDLTREAMGYSEKRGDTLNVVNSPF 420 >gi|77918796|ref|YP_356611.1| flagellar M-ring protein FliF [Pelobacter carbinolicus DSM 2380] gi|77544879|gb|ABA88441.1| flagellar M-ring protein FliF [Pelobacter carbinolicus DSM 2380] Length = 519 Score = 156 bits (395), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 134/451 (29%), Positives = 215/451 (47%), Gaps = 30/451 (6%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 R R L L +V+L ++ F A F N Y L+ L+ +D + L E + +R+ Sbjct: 19 RKRQLSLLAVVLACVVFFAAIIFQANKADYQMLFGNLDSADAAAVVDRLKEQKVPYRLEH 78 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 G +I +P+ V + R+ +A GLP G+E+FDK SFG+T F Q+I +RAL+GE Sbjct: 79 GGRAIFIPADKVYEIRLAMAGSGLPRGG-GVGFEIFDK-QSFGMTDFAQKINYLRALQGE 136 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVA 196 ++RTI S++ + AARVH+ +P+ FR + +ASV+++ + + I +LVA Sbjct: 137 LSRTIASLAPVEAARVHLALPEKRLFRDQQQKASASVIVKLATGQSLRETQILGIVNLVA 196 Query: 197 AAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS---LSIVQAIQHEIEMNINKALAAFL 253 +V LD+ V V+D G++L+ G + L Q ++ +E+ L L Sbjct: 197 GSVDGLDVDQVAVIDDNGRVLSQTADHSGTGGTAPDMLEYQQNLEQRLELRAQALLDRAL 256 Query: 254 GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP 313 G+ N V A ++ ++ E YDP+ RS + S SE +A V Sbjct: 257 GMGNSMVQVTAAIDYTQRERMEESYDPNQTAVRSEQSS-----SEKGGVANAGGVPGVQT 311 Query: 314 HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGRLTEVL 372 ++ + K S T + E NYEI +K ++ D+ ++ LS+AV+V + Sbjct: 312 NIKNEKA--GNSFIPTSRSNETINYEI-SKVVSKQVDSVGSIKNLSVAVLV----ADRPV 364 Query: 373 GRSADQGKIDSY-------LAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT-V 424 D K SY LA I K++S A G+N RGD I + S F FNS V Sbjct: 365 DNQGDTDKAPSYQPRDPKELAAIEKMISRALGLNPDRGDQIAVISRPF--ETAFNSEPLV 422 Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFL 455 + S + + + AL+ L L F+ Sbjct: 423 KSSPWSRIYQMVPMIKYALLALTAGLFYFFV 453 >gi|291278937|ref|YP_003495772.1| flagellar M-ring protein FliF [Deferribacter desulfuricans SSM1] gi|290753639|dbj|BAI80016.1| flagellar M-ring protein FliF [Deferribacter desulfuricans SSM1] Length = 556 Score = 156 bits (395), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 136/494 (27%), Positives = 245/494 (49%), Gaps = 42/494 (8%) Query: 1 MAILDQLLQF---FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEV 57 MA+ D + QF F S + + + I+ + + I++ + + N P Y LY L Sbjct: 1 MALKDFINQFKAVFNSLSLIQKVSIVTATVAVFLTIIVLV---IWANKPVYKTLYSNLSS 57 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 D +I L I + + DNG +I VP V + R++LA +GLPS +G+ELFDK Sbjct: 58 DDAAKIVEELKANKIPYELKDNGKTILVPEKNVYELRLNLAQKGLPSGGG-AGFELFDK- 115 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 +SFG++ F Q + RAL+GE+ARTI+S+ + ARVH+ +P F + P A+V++ Sbjct: 116 SSFGISEFAQNVNYQRALQGELARTIKSLDEVEDARVHLTLPKERIFVSEESSPKATVVL 175 Query: 178 RAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKS-L 231 + N + ++ +AI LVA AV L + +V V+D+ G+LL+ + + E +L ++ L Sbjct: 176 KFRNGANISRENIKAIASLVAGAVKGLTIDNVQVVDTKGRLLSEFLSKDYEPLLLTQTQL 235 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + I+ +E IN L+ LG DN + V A+++ + + + YDP+ V RS + Sbjct: 236 EYQKHIEKNLESKINSILSRVLGPDNAVAKVTADIDFTKKVVSKEEYDPNP-VLRSQQTV 294 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIA 346 + ++ + P V N+ P ++ N K E N+E+ Sbjct: 295 EIESKNTPNAPGGTPGVSSNLAE--------PNNINNGSNSEYSKAETTQNFEVGKTVTK 346 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKI---VSAATGINSRRG 403 ++++++AV++N ++ + G+ + + EI KI V +A GI+ RG Sbjct: 347 EEKPIGVVKKITVAVLLNDKKVVKEEGKKSKIEYVKWTPEEIEKIKKLVESAAGIDVNRG 406 Query: 404 DTITITSMDF-----LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 D I +T++ F LE F + ++S + ++++ L L+ L + Sbjct: 407 DRIEVTNISFDTTHDLEVASFYNKQEKMSLIFTIAKY------VLALLIVVLFYFLVVRP 460 Query: 459 ALRRLHNIDDAKKG 472 L+RL + + ++G Sbjct: 461 ILKRLETVRETEEG 474 >gi|161511085|ref|NP_773639.2| flagellar MS-ring protein [Bradyrhizobium japonicum USDA 110] Length = 537 Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 120/411 (29%), Positives = 204/411 (49%), Gaps = 13/411 (3%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 Q L F G R +I + LV F+ R V +P L+ L V D + I Sbjct: 2 QGLADFLKGIGAARFGAMIAVTAALVGFFAFVIMR--VTTPQMTTLFTDLSVEDSSSIIK 59 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L I F + + G+ I VP V + R+ LA +G GYE+FDK ++ G TSF Sbjct: 60 DLERQAIQFELRNEGTIIMVPKDKVTRLRMKLA-EGGLPKGGGVGYEVFDKSDALGTTSF 118 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 +Q I +RALEGE+ARTI++I I AARVH+V+P+ F + P+AS+++R Sbjct: 119 VQNINHLRALEGELARTIRAIDRIQAARVHLVLPERPLFSREAPEPSASIVVRVRGALEA 178 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQAIQHEIE 242 + AIRHLVA+AV L V+++D G+LL A + E+ + + + + + Sbjct: 179 QQIRAIRHLVASAVNGLKPQRVSIVDEAGQLLADGAATDPEQALGDERRT---TFEKRMR 235 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 + +++ +G R + A+ + + +DP+ +V RS + +++ S T+ Sbjct: 236 KQVEDIVSSVVGSGRARVQLSADFDFNKITQTSDKFDPEGRVLRSTQTREES--SMTADN 293 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 VTV +P +++ + + + K EE +NYEI+ + + ++ R+S+AV+ Sbjct: 294 NGQVTVNNELP--GNQQNNGVAAKDQSKKTEETNNYEISRTTKTEVTEAGRVNRISVAVL 351 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 V+ G A Q + L I +V +A G + +RGD + + ++ F Sbjct: 352 VDGIYSKNDKGELAYQDRTKEQLDRIATLVRSAIGFDQKRGDQVEVVNLRF 402 >gi|157371187|ref|YP_001479176.1| flagellar MS-ring protein [Serratia proteamaculans 568] gi|157322951|gb|ABV42048.1| flagellar M-ring protein FliF [Serratia proteamaculans 568] Length = 563 Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 117/410 (28%), Positives = 204/410 (49%), Gaps = 40/410 (9%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + SP Y LY + D I L++ NI FR ++NG+++ +P+ V + R+ LA Sbjct: 46 LWAKSPDYRVLYSNINDRDGGAIVTQLTQMNIPFRFAENGAALLIPADKVHETRLRLAQL 105 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F ++I RALEGE++RTI+S+ + ARVH+ +P Sbjct: 106 GLPKGGA-VGFELLDQ-EKFGISQFSEQINYQRALEGELSRTIESLGPVQNARVHLALPK 163 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + P+ASV + RA++ AI ++V+++V L G+VTV+D +G+ Sbjct: 164 PSLFVREQKSPSASVTLTLQPGRALDDG---QINAIVYMVSSSVAGLPPGNVTVVDQSGR 220 Query: 216 LLTANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT ++ R++ L ++ + I LA +G N R+ V A+++ T++ Sbjct: 221 LLTQSDGAGRDLNAAQLKYANEVESRYQRRIEAILAPMVGNGNARAQVTAQIDFATREQT 280 Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQPESAVT--VEQNMPHVSDR 318 + Y P+ ++ SK +S+ ++QP + T +E P + Sbjct: 281 DEEYQPNQLPNKAAVRSKQMSQSDQIGGPLVGGVPGALSNQPSAPATAPIETAKPAATGN 340 Query: 319 KVPLPR----------SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368 + S + +E +NYE++ T ++RLS+AVVVN R Sbjct: 341 NANATQPNAAATRSAASGPQNSRLDETTNYEVDRTIRHTQQKAGTVQRLSVAVVVNY-RG 399 Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 T+ G+ K LA+I +V + G +S RGDT+ + + F +N++ Sbjct: 400 TDKDGKPLPMSK--EQLAQIESLVRESMGFSSTRGDTLNVVNTPFTDNEV 447 >gi|207728374|ref|YP_002256768.1| flagellar m-ring protein [Ralstonia solanacearum MolK2] gi|206591620|emb|CAQ57232.1| flagellar m-ring protein [Ralstonia solanacearum MolK2] Length = 614 Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 137/470 (29%), Positives = 228/470 (48%), Gaps = 80/470 (17%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y LY + SD I AL + N+ +R +D S+I VP + V + R+ LAAQ Sbjct: 66 LWSRAPDYRVLYSNVADSDGGAIIAALQQMNVPYRFADGDSAIMVPEANVHEVRLKLAAQ 125 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP +G+EL + FG + F +++ RALEGE+ARTIQ++ + +ARVH+ + Sbjct: 126 GLPKGGL-AGFELMEN-QKFGTSQFAEQVNYQRALEGELARTIQAMQEVQSARVHLALSK 183 Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + A+P+ASV+++ + P +AI HLV+++VPNL + +VTV+D +G+LL Sbjct: 184 PSVFVREQAKPSASVLLK-LYPGRMLDRSQVQAIGHLVSSSVPNLPLANVTVVDQSGRLL 242 Query: 218 TANEMERNILG---KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQI 273 +++ + N G L+ V+ I+ I L +G DN R+ V A++++D T+Q+ Sbjct: 243 SSS-FQDNASGLDPTQLNYVRDIEQGYIKRIEAILGPVVGDDNVRAQVTADVDLDNTEQM 301 Query: 274 REIV---YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVP--------- 321 E DP + V RS S+ Q +Q N P + R +P Sbjct: 302 AETYRPNQDPANGVVRSTHTSESTQNKAGAQ-GGVPGALSNQPPTAPRMLPTAPAPASQQ 360 Query: 322 ---------------------------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 S+E++ ++ NYE++ T + Sbjct: 361 AAAGQNGQNGQNAPNGQQQAAAAAGQAATNSVESS-ARDTTVNYEVDKTVRRTRAAVGTV 419 Query: 355 ERLSIAVVVN---KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 RLS+AVVVN G+ + L D+ + ++N +V A G +++RGD++ + + Sbjct: 420 RRLSVAVVVNYRADGKTWKPLS--------DADMVKLNALVKDAVGYDAKRGDSVNVVNS 471 Query: 412 DFLENQLFNSGTVQVSFMDI-LSR-----HFATVINALVFLVGTLLVTFL 455 F SGT+ +S D+ L + H+A I A + G L + FL Sbjct: 472 QF-------SGTLPMSRDDLPLWKQPEMIHYA--IQAAKY--GALAIGFL 510 >gi|260868531|ref|YP_003234933.1| flagellar basal-body MS-ring and collar protein FliF [Escherichia coli O111:H- str. 11128] gi|257764887|dbj|BAI36382.1| flagellar basal-body MS-ring and collar protein FliF [Escherichia coli O111:H- str. 11128] gi|323180809|gb|EFZ66349.1| flagellar M-ring protein FliF [Escherichia coli 1180] Length = 552 Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 118/418 (28%), Positives = 200/418 (47%), Gaps = 40/418 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +M+ + + +P Y L+ L D I L++ NI +R+S+ + Sbjct: 25 LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRVSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFREQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ ++ S+ SE S P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPVPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429 >gi|319764515|ref|YP_004128452.1| flagellar m-ring protein flif [Alicycliphilus denitrificans BC] gi|330826731|ref|YP_004390034.1| flagellar M-ring protein FliF [Alicycliphilus denitrificans K601] gi|317119076|gb|ADV01565.1| flagellar M-ring protein FliF [Alicycliphilus denitrificans BC] gi|329312103|gb|AEB86518.1| flagellar M-ring protein FliF [Alicycliphilus denitrificans K601] Length = 564 Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 112/397 (28%), Positives = 195/397 (49%), Gaps = 26/397 (6%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 F+ P Y L+ L D I L++ N+ ++ ++ G +I VP+ V R+ LA Q Sbjct: 50 FYGRQPEYRVLFSGLNDKDGGAIVAQLAQMNVPYKYTEGGGAIMVPAERVHDVRLRLATQ 109 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S +G+EL + N FG+T F + + R LEGE+ R+IQ+++ + +ARVH+ +P+ Sbjct: 110 GLPKGSV-TGFELME-TNRFGVTQFQERLNFQRGLEGELTRSIQALASVQSARVHLALPN 167 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + +P+ASV++ + + I HLVA++VP L V+VLD TGKLL+ Sbjct: 168 QNGFFREQQKPSASVLLTLYPGRILDRTQIAGIVHLVASSVPELAPSAVSVLDDTGKLLS 227 Query: 219 ANE---MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM----DTQ 271 + + + L+ VQ I+ + I L +G +N ++ V AE++ T Sbjct: 228 QSPDGGAGSGVDAQQLAYVQQIEQQYTRRILDLLEPVVGKNNVKAQVTAEVDFSQTESTS 287 Query: 272 QIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV--TVEQNMPHVSDRKV----PLP-- 323 + PD+ RS ++ + + +QP + V V P S + P P Sbjct: 288 EQHRPNLSPDASAVRSQQIVESGA-APAAQPPTGVPGAVSNQPPQGSTAPINGANPPPTA 346 Query: 324 -----RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA-D 377 + K+E +NYE++ + T ++R++ AVVVN ++E G+ A + Sbjct: 347 ANAQQAGQQAGGKRESITNYEVDKTTRVTRAGAGAIKRVNAAVVVNYQSVSEAPGKPAVN 406 Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 + + ++ +V G N RGD++ + + FL Sbjct: 407 KALSPEQIEQMTALVRETIGFNKERGDSVNLMNAPFL 443 >gi|291613068|ref|YP_003523225.1| flagellar M-ring protein FliF [Sideroxydans lithotrophicus ES-1] gi|291583180|gb|ADE10838.1| flagellar M-ring protein FliF [Sideroxydans lithotrophicus ES-1] Length = 546 Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 115/407 (28%), Positives = 203/407 (49%), Gaps = 40/407 (9%) Query: 35 LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKAR 94 LFM + +P Y LY + D + +L + NI ++ ++ G+ + VP+ V + R Sbjct: 41 LFM----WGQTPDYRVLYANMSERDGGAVIESLQQQNIPYKFTEGGT-LMVPADRVYEVR 95 Query: 95 IHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARV 154 + +AA+GLP + G+EL + FG + F++++ RALEGE++R++++I+ + +ARV Sbjct: 96 LQMAAKGLPKGGT-VGFELMEN-QKFGTSQFLEQVNYQRALEGELSRSVETIASVASARV 153 Query: 155 HIVMPDMGSFRKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDS 212 H+ +P F K +P+ASV+ +RA N AI HL++++VPN++ +VTV+D Sbjct: 154 HLAIPKQSVFVKEQQKPSASVILSLRAGNSLDEGQVSAIVHLISSSVPNMNAQNVTVVDQ 213 Query: 213 TGKLLTA---NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM- 268 +G LL++ + E+ + L V+ I+ + I L GV N R+ V A L+ Sbjct: 214 SGTLLSSARDSNAEQLMDATQLKYVRQIEQDYVKRIEDILIPITGVQNVRAQVTASLDFS 273 Query: 269 DTQQIREIV---YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRS 325 T+Q E P+ RS+ +T + ++ T +P + P+P + Sbjct: 274 QTEQTAETFRPNQPPNQAAVRSL---------QTLETQNGTTSTGGVPGALSNQPPVPAT 324 Query: 326 ---------------LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTE 370 KE +NYE++ T ++RLSIAVVVN T Sbjct: 325 APIVTPASAVVAAAGTAGNMHKELTTNYEVDRTIQHTKLPVGSIKRLSIAVVVNNPSTTG 384 Query: 371 VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 G++ + D+ A+I +V G +++RGD++ + + F E Q Sbjct: 385 KDGKATSRPYTDAEKAQITALVKETVGFDAKRGDSLNLLNSAFNEQQ 431 >gi|170769442|ref|ZP_02903895.1| flagellar M-ring protein FliF [Escherichia albertii TW07627] gi|170121766|gb|EDS90697.1| flagellar M-ring protein FliF [Escherichia albertii TW07627] Length = 552 Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 113/397 (28%), Positives = 193/397 (48%), Gaps = 32/397 (8%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R+S+ +I VP+ V + R+ LA Q Sbjct: 41 LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRVSETSGAIEVPADKVHELRLRLAQQ 100 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE++RTI++I + ARVH+ +P Sbjct: 101 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLALPK 158 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + + + AI HLV++AV L G++T++D G LLT Sbjct: 159 PSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAGLPTGNITLVDQGGHLLT 218 Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 +N ER++ L ++ I+ I L +G N + V A+L+ +++ E Sbjct: 219 QSNSSERDLNDIQLKYANDVESRIQQRIEAILTPIVGNGNIHAQVTAQLDFASKEQTEEQ 278 Query: 278 YDPDSKVERSIRLSKDAQRSETS---QPESAVTVEQNMP-HVSDRKVPLPRSLENTDKKE 333 Y P+ ++ S+ SE S P N P ++ + P + +N +++ Sbjct: 279 YRPNGNESQTALRSRQLNESEQSGSGYPGGVPGALSNQPAPANNAPISTPPTTQNNRQQQ 338 Query: 334 ---------------EQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTE--VLGRSA 376 E SNYE++ T + ++RLS+AVVVN L + L S Sbjct: 339 TSTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNDKTLPDGKPLPLST 398 Query: 377 DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 +Q + +I + A G + +RGD++ + + F Sbjct: 399 EQ------MKQIEDLTREAMGFSEKRGDSLNVVNSPF 429 >gi|293410294|ref|ZP_06653870.1| flagellar M-ring protein FliF [Escherichia coli B354] gi|291470762|gb|EFF13246.1| flagellar M-ring protein FliF [Escherichia coli B354] Length = 552 Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 117/418 (27%), Positives = 202/418 (48%), Gaps = 40/418 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +M+ + + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIIAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQRSETSQPESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ + S+ ++++S +S P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSSYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429 >gi|1772459|dbj|BAA14029.1| FliF [Escherichia coli W3110] Length = 552 Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 119/418 (28%), Positives = 198/418 (47%), Gaps = 40/418 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +M+ + + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT +N R++ L ++ I+ I L+ +G N R Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIR 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A L+ +++ E Y P+ + S+ SE S P N P + Sbjct: 261 AQVTAHLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429 >gi|162136034|ref|YP_530830.2| flagellar MS-ring protein [Rhodopseudomonas palustris BisB18] Length = 539 Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 148/555 (26%), Positives = 254/555 (45%), Gaps = 36/555 (6%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 L+ F K LG R++ + +V I F V +P L+ L V D + I Sbjct: 4 LVSFLKG---LGAARLMAMIAVTAALIGFFAFVIMRVTTPQMTTLFTDLSVEDSSGIIKD 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L I F I + GS I VP V + R+ LA +G GYE+FDK ++ G TSF+ Sbjct: 61 LERQAIPFEIRNEGSVIMVPKDKVTRLRMKLA-EGGLPKGGGVGYEIFDKSDALGSTSFV 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 Q I +RALEGE+ARTI++I I AARVH+V+P+ F + P+AS+++R + Sbjct: 120 QNINHLRALEGELARTIRAIDRIQAARVHLVLPERPLFSRETPEPSASIVLRVRGALEPQ 179 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL----TANEMERNILGKSLSIVQAIQHEIE 242 AIRH+VA+AV L V+++D G+LL + G + + Sbjct: 180 QVRAIRHVVASAVNGLKPQRVSIVDEAGQLLADGAAGDPASDGATGDERR--AGFEKRMR 237 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 + +++ +G R + A+ + + +DP+ +V RS + +++ ++ + Sbjct: 238 NQVEAIVSSVVGSGRARVQLTADFDYNKVTQTSDKFDPEGRVLRSSQSREESSQTAAAN- 296 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 + VTV +P + + + K EE +NYEI+ + + ++ R+S+AV+ Sbjct: 297 DGQVTVNNELPGAQAGAG-AAVARDQSKKSEETNNYEISRVTKTEITEAGRVNRISVAVL 355 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS- 421 V+ G Q + L I +V +A G + +RGD + + ++ F E Sbjct: 356 VDGIYGKNDKGEMVYQERSKDQLDRIAALVRSAIGFDQKRGDQVEVVNLRFAEAPSVPPV 415 Query: 422 -------GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 G VQ + D++ VI V ++ L+V F+ + L R I A+ G Sbjct: 416 AEPGGLLGMVQFTKDDVM-----YVIELAVMMLLGLVVMFMVIRPLVR--RILAAEPGAA 468 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 G + P ++ A T + P D + L + ++ +++ V QS R+ + Sbjct: 469 GANGV---PALTDASGTAIGP-DGLPLVAPGPNMIDI-----AQVQGQVHAQSVHRVGEL 519 Query: 535 IEINEERFAKILRKW 549 + N A I+R+W Sbjct: 520 ADRNPNETAAIVRQW 534 >gi|300818642|ref|ZP_07098850.1| flagellar M-ring protein FliF [Escherichia coli MS 107-1] gi|300528814|gb|EFK49876.1| flagellar M-ring protein FliF [Escherichia coli MS 107-1] Length = 552 Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 118/418 (28%), Positives = 200/418 (47%), Gaps = 40/418 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +M+ + + +P Y L+ L D I L++ NI +R+S+ + Sbjct: 25 LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRVSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ ++ S+ SE S P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPVPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429 >gi|294678998|ref|YP_003579613.1| flagellar M-ring protein FliF [Rhodobacter capsulatus SB 1003] gi|294477818|gb|ADE87206.1| flagellar M-ring protein FliF [Rhodobacter capsulatus SB 1003] Length = 551 Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 125/425 (29%), Positives = 212/425 (49%), Gaps = 19/425 (4%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + QL+ ++ L TR +++A ++ +A F + LY LE + + Sbjct: 1 MQQLMAVWQG---LDTTRRVLVAGATILMFAAILALSSFASRSDMALLYAGLEGARAGEV 57 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 AL + + + G SI V ++ + R+ LA +GLP++ +GYEL D ++ FG T Sbjct: 58 VAALDARAVPYEV--RGDSIYVDAARRDELRMALAGEGLPATG-GAGYELLDGLSGFGTT 114 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 S M + RA EGE+ARTI + I AARVHI P SFRK PTASV + + Sbjct: 115 SQMFDAAYWRAKEGELARTIVANPMIRAARVHIAAPSGQSFRKEN-HPTASVTVTTASGG 173 Query: 184 VYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242 + + A+A++ LV++AV + DV+++DS L++ + N + E+ Sbjct: 174 LSPTHAKALKFLVSSAVQGMSPDDVSIIDSVAGLISTGDDVFNPAANDRA------EELR 227 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 N+ + L A +G N V + + + I E +PDS+V S + +++S+ ++P Sbjct: 228 SNVERLLEARVGYGNAVVEVSVQTVTEREAITEKRIEPDSRVAISTETQERSEKSDDTKP 287 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 AVTV N+P +S + EQ N+E++ + + ++RL++AV+ Sbjct: 288 -GAVTVASNLPQ--GDAANGGKSQSQASETREQVNFEVSETTREVLRNPGDIKRLTVAVL 344 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 V+ + G +A + D LA + ++V++A G + +RGD ITI SM F L +G Sbjct: 345 VDGVEGKDANGVTAITPRTDEELAALKELVASAVGFDEKRGDVITIRSMAF--EPLAETG 402 Query: 423 TVQVS 427 T S Sbjct: 403 TEATS 407 >gi|238784726|ref|ZP_04628730.1| Flagellar M-ring protein [Yersinia bercovieri ATCC 43970] gi|238714405|gb|EEQ06413.1| Flagellar M-ring protein [Yersinia bercovieri ATCC 43970] Length = 572 Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 142/549 (25%), Positives = 256/549 (46%), Gaps = 67/549 (12%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + SP Y LY L D I L++ NI +R +DNG ++ +P+ V + R+ LA Q Sbjct: 46 LWAKSPDYRVLYSNLSDRDGGEIVTQLTQLNIPYRFADNGGALLIPADKVHETRLRLAQQ 105 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F ++I RALEGE+ARTI ++ ++ RVH+ MP Sbjct: 106 GLPKGGA-VGFELLDQ-EKFGISQFSEQINYQRALEGELARTIGTLGPVLNVRVHLAMPK 163 Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + PTASV + A+ P AI ++V+++V L G+VTV+D TG+LL Sbjct: 164 PSLFVREQKSPTASVTL-ALQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLL 222 Query: 218 T-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 T ++ R++ L +++ + I LA +G N + V A+++ +++ + Sbjct: 223 TQSDSAGRDLNAAQLKFTNEVENRFQRRIETILAPMVGSGNVHAQVTAQVDFASREQTDE 282 Query: 277 VYDPDSKVERSIRLSKDAQRSE------TSQPESAVTVEQNMPHVSDRKVPLPRSL---- 326 Y P+ + S+ SE A++ + + V+ +VP P + Sbjct: 283 EYKPNQAANQGAVRSQQTSNSEQLGGSNVGGVPGALSNQPSATPVAPIEVPQPAPVAGAA 342 Query: 327 ------------------------ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 + + ++ +N+E++ T ++RLS+AVV Sbjct: 343 GAAANNANAANRPATTTAARSTATSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVV 402 Query: 363 VNKG--RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 VN G + + + S DQ LA++ + A G ++ RGDT+ + + F N + Sbjct: 403 VNYGSDKAGKPVALSKDQ------LAQVESLTREAMGFSTDRGDTLNVVNTPF--NATDD 454 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 + + F S F ++N +L+ LLV ++ R+L AKK ++ K+ Sbjct: 455 GSGLSLPFWKQQS-FFDQLLNGGRYLL-ILLVAWI---LWRKLVRPMIAKK-QLADKAAA 508 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 S ++S V T + S +++ +N Q R+++ V Q R+ + + + Sbjct: 509 S---VNSMVQTAQTAE---TVKQSKEELALRKKN-QQRVSAEVQAQ---RIRELADKDPR 558 Query: 541 RFAKILRKW 549 A ++R+W Sbjct: 559 IVALVIRQW 567 >gi|309795955|ref|ZP_07690368.1| flagellar M-ring protein FliF [Escherichia coli MS 145-7] gi|308120405|gb|EFO57667.1| flagellar M-ring protein FliF [Escherichia coli MS 145-7] Length = 552 Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 118/418 (28%), Positives = 199/418 (47%), Gaps = 40/418 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +M+ + + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L +G+VT++D G LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPLGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ + S+ SE S P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429 >gi|317048599|ref|YP_004116247.1| flagellar M-ring protein FliF [Pantoea sp. At-9b] gi|316950216|gb|ADU69691.1| flagellar M-ring protein FliF [Pantoea sp. At-9b] Length = 571 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 117/412 (28%), Positives = 197/412 (47%), Gaps = 53/412 (12%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I L++ NI ++ ++NG ++ VP+ V + R+ LA QG Sbjct: 48 WAKAPDYRVLYSNLSDEDGGAIVTQLTQMNIPYQFAENGGALMVPADKVHELRLRLAQQG 107 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL DK FG++ F +++ RALEGE+ARTI+++ + +AR+H+ MP Sbjct: 108 LPKGGS-VGFELMDK-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARIHLAMPKP 165 Query: 162 GSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 F + P+ASV + RA++ +A+ H+V+++VP L G+VTV+D G+L Sbjct: 166 TLFVREQKAPSASVTLNLQPGRALDEG---QIQAVVHMVSSSVPGLPPGNVTVVDQAGRL 222 Query: 217 LTANEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LT ++ E R++ L ++ + I L +G N + V A+LN D + + Sbjct: 223 LTRSDSEGRDLNDAQLKYTAEVEGRYQQRIEAILNPIVGQGNVHAQVTAQLNFDRSEQTD 282 Query: 276 IVYDPDSKVERSIRLSKDAQRSE--------------TSQPESAVTVEQNMPHVSDRKV- 320 Y P+ + S S+ SE ++QP A T P ++ Sbjct: 283 EKYQPNGSPDNSAIRSRQTSTSEQNGSPYPGGVPGALSNQPAPANTAPVTNPPANNANGQ 342 Query: 321 ---------------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365 S + ++++ NYE++ T + ++RLS+AVVVN Sbjct: 343 NANGQNNAANGTNTSTTQNSGPSNSRRDDTVNYELDRTIRHTKLNVGDVQRLSVAVVVNY 402 Query: 366 GRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 R+ D+GK D + +I + A G + RGD+I + + F Sbjct: 403 --------RADDKGKEVALNDQQIKQIEDLTREAMGYSQTRGDSINVVNSPF 446 >gi|257095338|ref|YP_003168979.1| flagellar MS-ring protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047862|gb|ACV37050.1| flagellar M-ring protein FliF [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 578 Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 123/438 (28%), Positives = 212/438 (48%), Gaps = 51/438 (11%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 R ++L++ SV V + L +AA + + L+ + D I AL + N+ ++ S+ Sbjct: 31 RQKVLLIVSVAAV-VTLLIAAATLLRQGEFKVLFSNIGERDGGAIIAALEQMNVPYKFSE 89 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 +GS+I V S V R+ LAAQGLP + G+EL + FG++ F +++ R LEGE Sbjct: 90 SGSAILVHDSRVHDVRLRLAAQGLPRGGA-VGFELME-AQKFGVSQFAEQVNYQRGLEGE 147 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRH 193 ++RTIQSI+ + AARVH+ +P F + +P+ASV++ R++ P + I++ Sbjct: 148 LSRTIQSIAAVQAARVHLAIPKPSVFMREELKPSASVLLNLYPGRSLEP---RQIAGIQN 204 Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL-----SIVQAIQHEIEMNINKA 248 LVAA+VP L VT+LD +G LL+ +M+ +L L +Q ++ + + Sbjct: 205 LVAASVPQLAPTSVTLLDQSGALLS--QMKSKLLEAGLDPTQVKYIQEVEASVIKRVEDI 262 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD-SKVERSIRLSKDAQRSETS------- 300 LA +G N R + A+++ + + P+ + E SIR + ++ + TS Sbjct: 263 LAPIVGPGNARVQIAADIDFSQSEQTAETHRPNATPPEISIRSQQSSETASTSPAAQGVP 322 Query: 301 -----QPESAVTVEQNMPHV------SDRKVPLPRSLEN--------------TDKKEEQ 335 QP T P V + P+P + + K Sbjct: 323 GALSNQPPVPATAPLTQPPVPGAGGAAPATPPVPGQINVAGVQAPVASVGPPISTSKNST 382 Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395 NYE++ ++RLS AVVVN+ + G++ ++ D+ + +I+ +V A Sbjct: 383 VNYEVDKTIRHVRQAVGTIKRLSAAVVVNQRKEVAKDGKAVNKPLPDAEVKQISDLVKEA 442 Query: 396 TGINSRRGDTITITSMDF 413 G N RGDTI++ + F Sbjct: 443 MGFNKERGDTISVANAPF 460 >gi|332095496|gb|EGJ00512.1| flagellar M-ring protein FliF [Shigella dysenteriae 155-74] Length = 473 Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 119/416 (28%), Positives = 200/416 (48%), Gaps = 36/416 (8%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +M+ + + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ ++ S+ SE S P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTE--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + L S +Q + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPDGKPLPLSNEQ------MKQIEDLTREAMGFSEKRGDSLNVVNSPF 429 >gi|323948358|gb|EGB44345.1| flagellar M-ring protein FliF [Escherichia coli H120] Length = 552 Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 118/418 (28%), Positives = 200/418 (47%), Gaps = 40/418 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +M+ + + +P Y L+ L D I L++ NI +R+S+ + Sbjct: 25 LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRVSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ ++ S+ SE S P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429 >gi|90104474|gb|ABD86511.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris BisB18] Length = 547 Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 148/555 (26%), Positives = 254/555 (45%), Gaps = 36/555 (6%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 L+ F K LG R++ + +V I F V +P L+ L V D + I Sbjct: 12 LVSFLKG---LGAARLMAMIAVTAALIGFFAFVIMRVTTPQMTTLFTDLSVEDSSGIIKD 68 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L I F I + GS I VP V + R+ LA +G GYE+FDK ++ G TSF+ Sbjct: 69 LERQAIPFEIRNEGSVIMVPKDKVTRLRMKLA-EGGLPKGGGVGYEIFDKSDALGSTSFV 127 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 Q I +RALEGE+ARTI++I I AARVH+V+P+ F + P+AS+++R + Sbjct: 128 QNINHLRALEGELARTIRAIDRIQAARVHLVLPERPLFSRETPEPSASIVLRVRGALEPQ 187 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL----TANEMERNILGKSLSIVQAIQHEIE 242 AIRH+VA+AV L V+++D G+LL + G + + Sbjct: 188 QVRAIRHVVASAVNGLKPQRVSIVDEAGQLLADGAAGDPASDGATGDERR--AGFEKRMR 245 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 + +++ +G R + A+ + + +DP+ +V RS + +++ ++ + Sbjct: 246 NQVEAIVSSVVGSGRARVQLTADFDYNKVTQTSDKFDPEGRVLRSSQSREESSQTAAAN- 304 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 + VTV +P + + + K EE +NYEI+ + + ++ R+S+AV+ Sbjct: 305 DGQVTVNNELPGAQAGAG-AAVARDQSKKSEETNNYEISRVTKTEITEAGRVNRISVAVL 363 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS- 421 V+ G Q + L I +V +A G + +RGD + + ++ F E Sbjct: 364 VDGIYGKNDKGEMVYQERSKDQLDRIAALVRSAIGFDQKRGDQVEVVNLRFAEAPSVPPV 423 Query: 422 -------GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 G VQ + D++ VI V ++ L+V F+ + L R I A+ G Sbjct: 424 AEPGGLLGMVQFTKDDVM-----YVIELAVMMLLGLVVMFMVIRPLVR--RILAAEPGAA 476 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 G + P ++ A T + P D + L + ++ +++ V QS R+ + Sbjct: 477 GANGV---PALTDASGTAIGP-DGLPLVAPGPNMIDI-----AQVQGQVHAQSVHRVGEL 527 Query: 535 IEINEERFAKILRKW 549 + N A I+R+W Sbjct: 528 ADRNPNETAAIVRQW 542 >gi|71906412|ref|YP_283999.1| flagellar MS-ring protein [Dechloromonas aromatica RCB] gi|71846033|gb|AAZ45529.1| Flagellar FliF M-ring protein [Dechloromonas aromatica RCB] Length = 584 Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 131/452 (28%), Positives = 220/452 (48%), Gaps = 50/452 (11%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P + L+ L D I+ L + NI R S++G+ + VPS V + R+ LA+Q Sbjct: 52 LWSRQPDWKVLFSNLTEKDGGSIAAILEQQNIPHRYSNSGALL-VPSDRVHEVRLKLASQ 110 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP G+EL + FG++ F +++ R LEGE+ARTIQSI + +ARVH+ +P Sbjct: 111 GLPRGGM-VGFELMEN-QKFGVSQFAEQVNYQRGLEGELARTIQSIGSVQSARVHLAIPK 168 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + +PTASVM+ + I HLV+++VP L +VTVLD +G LL+ Sbjct: 169 PSVFVREEQKPTASVMLNLYPGRTLDGGQIAGITHLVSSSVPQLPASNVTVLDQSGALLS 228 Query: 219 ---ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM-DTQQIR 274 + E + + V +++ I I++ L+ LG DNF+ V A+++ T+Q Sbjct: 229 QLKSKLTEAGLDPTQIKYVHDVENSIIKRIDEILSPLLGADNFKVQVAADIDFSQTEQTA 288 Query: 275 EIVYDPDSKVER-SIRLSKDAQRSETSQP----ESAVTVEQNMPHVSDRKVPLPRSLENT 329 E Y P++ E SIR ++ + + +Q A+T + +P + P + Sbjct: 289 E-SYRPNNTPESTSIRSQQNNETANVNQAAGGVPGALTNQPPVPATAPLTQPATGTTPGQ 347 Query: 330 DKKEEQSNYEINT-----------KSIATTHD---NYKLE--------------RLSIAV 361 K + +I+ + I+T+ + NY+L+ RLS AV Sbjct: 348 PAKPGEPQGKIDAAGVTAPLNAAGQPISTSKNATINYELDKTIRHTRQGMGNIRRLSAAV 407 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI-----TSMDFLEN 416 VVN + + G+ + D+ + +IN++V A G RGDT+++ T++D EN Sbjct: 408 VVNHRKDVDKTGKPLTKAIPDAEMKQINELVREAMGFTKERGDTLSVANAPFTAIDKSEN 467 Query: 417 QL-FNSGTVQVSFM-DILSRHFATVINALVFL 446 +L VS++ DIL I A +++ Sbjct: 468 ELPIWKDPENVSYIKDILKYLLIAAIIAFLYI 499 >gi|296283238|ref|ZP_06861236.1| flagellar MS-ring protein [Citromicrobium bathyomarinum JL354] Length = 514 Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 120/431 (27%), Positives = 209/431 (48%), Gaps = 30/431 (6%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110 LY L+ + I+ L N+ F +S +G+++ P + + + R+ +A + L G Sbjct: 31 LYTDLDPTAAQAITEKLRAQNVPFSLSGDGTAVMAPENRLPELRMSMAGEQL---GGAIG 87 Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170 YE+ D +FG++S +++ RA+EGE+ R+I ++ IV ARVH+VMP+ F + Sbjct: 88 YEVLDTQQAFGVSSSREKMNETRAIEGELGRSIATLQSIVNARVHLVMPERALFAPEARK 147 Query: 171 PTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS 230 +ASV ++ + EAIR+LVAAAVP L ++++D TG LL A E G S Sbjct: 148 ASASVTVKTRGKLSSGNVEAIRYLVAAAVPELSPESISIVDQTGALL-ARAGEAGEAGAS 206 Query: 231 LSIVQAIQHE--IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV-ERS 287 + + + E I I + +GV R+ V AE++ D + V+DPD++V R Sbjct: 207 QADERQVATEARIRSQIEALIEPIVGVGKVRAEVSAEIDRDQTREESEVFDPDTQVIARQ 266 Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT-DKKEEQSNYEINTKSIA 346 I + Q E + VTV +P D + E+ ++ E ++ +++ Sbjct: 267 ISVESGDQNRENAGATPGVTVGAQLPEGGDVMGGGGDTRESARNETSEDITFQNSSRRTL 326 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 TT K+ RL++AV+V+ G +QG + + ++V A G ++ RGD++ Sbjct: 327 TTRTPGKVSRLTVAVMVDGG----------EQGLPAPQVQRLTRLVENAVGYDAERGDSV 376 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV-TFLGLHALR--RL 463 + SM F + D ++ + +F +G LLV +GL LR R Sbjct: 377 IVESMPFAQPD---------EIADAEGDFWSDLPLGQLFDLGKLLVIAVVGLFVLRMLRP 427 Query: 464 HNIDDAKKGEV 474 N+ + G++ Sbjct: 428 KNVPASAAGQL 438 >gi|187926897|ref|YP_001893242.1| flagellar M-ring protein FliF [Ralstonia pickettii 12J] gi|241665226|ref|YP_002983585.1| flagellar M-ring protein FliF [Ralstonia pickettii 12D] gi|187728651|gb|ACD29815.1| flagellar M-ring protein FliF [Ralstonia pickettii 12J] gi|240867253|gb|ACS64913.1| flagellar M-ring protein FliF [Ralstonia pickettii 12D] Length = 611 Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 131/483 (27%), Positives = 228/483 (47%), Gaps = 79/483 (16%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y L+ + +D I AL + N+ +R +D G++I VP + V + R+ LA+QG Sbjct: 67 WSRAPDYRVLFSNVSDADGGAIIAALQQMNVPYRFADGGTAIMVPEANVHETRLKLASQG 126 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP +G+EL + FG + F +++ RALEGE+ARTIQ++ + +ARVH+ + Sbjct: 127 LPKGGL-AGFELMEN-QKFGTSQFAEQVNYQRALEGELARTIQAMQEVQSARVHLALSKP 184 Query: 162 GSFRKIGARPTASVMIRAINPSVYKS-------AEAIRHLVAAAVPNLDMGDVTVLDSTG 214 F + A+P+ASV++ ++Y +AI HLV+++VPNL + +VTV+D G Sbjct: 185 SVFVREQAKPSASVLL-----TLYPGRMLDRSQVQAIGHLVSSSVPNLPLANVTVVDQAG 239 Query: 215 KLLTANEMERNILG---KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-T 270 +LL+++ + N G L+ V+ I+ I L +G DN R+ V A++++D T Sbjct: 240 RLLSSS-FQDNASGLDPTQLNYVREIEQGYIKRIEAILGPVVGDDNVRAQVTADVDLDNT 298 Query: 271 QQIREIV---YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDR--------- 318 +Q+ E DP + RS ++ Q +Q N P + R Sbjct: 299 EQMAETYRPNQDPSTAAVRSTHTAESTQNKADAQ-GGVPGALSNQPPTAPRMLPTAPAPA 357 Query: 319 -------------KVPLP---------RSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 + P + + ++ +NYE++ T + R Sbjct: 358 SQPAAAGPNGANGQAQQPAAANTNATTTNGATSSTRDTTTNYEVDKTVRRTRAAVGTVRR 417 Query: 357 LSIAVVVN---KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 LS+AVVVN G+ + L D+ +A++N +V A G +++RGD++ + + F Sbjct: 418 LSVAVVVNYRADGKTWKPLS--------DAEMAKLNALVKDAVGFDAKRGDSVNVVNSQF 469 Query: 414 LENQLFNSGTVQVSFMDI-------LSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 SGT+ V D+ + ++ L +G L++ F + L R N Sbjct: 470 -------SGTLPVPKDDLPLWKQPEMIQYAIQAAKYLALAIGFLILVFAVIRPLIRSLNK 522 Query: 467 DDA 469 DA Sbjct: 523 KDA 525 >gi|121608098|ref|YP_995905.1| flagellar M-ring protein FliF [Verminephrobacter eiseniae EF01-2] gi|121552738|gb|ABM56887.1| flagellar M-ring protein FliF [Verminephrobacter eiseniae EF01-2] Length = 562 Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 120/393 (30%), Positives = 199/393 (50%), Gaps = 30/393 (7%) Query: 44 NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP 103 + P Y L+ L D I LS+ N+ +R+++ G +I VP+ V + R+ LA+QGLP Sbjct: 60 HQPDYRVLFGNLSDKDGGTIVAQLSQMNVPYRLAEGGGAILVPADRVHEVRLRLASQGLP 119 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 S G+EL + + FG+T F + + R LEGE+ R+IQ++S + +ARVH+ +P+ Sbjct: 120 KGSV-VGFELMES-SKFGVTQFQERLNFRRGLEGELTRSIQALSPVQSARVHLALPEQNG 177 Query: 164 FRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT--- 218 F + +P+ASV++ + A+ I HLVAA+VP + V+VLD TGKLL+ Sbjct: 178 FFREQQKPSASVLVSLYPGRFLERAQLAGIVHLVAASVPEMAPSAVSVLDDTGKLLSRSP 237 Query: 219 --ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM-----DTQ 271 A + E N + L VQ I+ + I L +G DN ++ V A+++ ++ Sbjct: 238 DGAADAEVN--AQQLLHVQRIEQQYTRRILDILEPVVGRDNVKAQVTADVDFTQTESSSE 295 Query: 272 QIREIVYDPDSKVERSIRL---SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSL-- 326 Q R P+S RS +L A + T P AV+ + +P + P P Sbjct: 296 QFRP-NQQPESGAVRSQQLLESRSGANKLPTGIP-GAVSNQPPVPSTAPINGPNPAPNAG 353 Query: 327 ------ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380 E T+K+E +NYE++ ++RLS AVVVN + + GR+ + Sbjct: 354 GQQGPDEQTNKRESTTNYELDRTVRVVRGSTGTVKRLSAAVVVNYQSVLDK-GRAVSRAL 412 Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 + ++ +V + G +S RGD++ + + F Sbjct: 413 TPEQIGQMTALVRESIGFDSARGDSVNLMNTPF 445 >gi|91776330|ref|YP_546086.1| flagellar M-ring protein FliF [Methylobacillus flagellatus KT] gi|91710317|gb|ABE50245.1| flagellar M-ring protein FliF [Methylobacillus flagellatus KT] Length = 586 Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 115/416 (27%), Positives = 190/416 (45%), Gaps = 51/416 (12%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y L+ D I AL + N+ +RI+D GS+I VP++ V R+ LA+Q Sbjct: 51 LWSQKPEYRVLFSSYSDKDGGAIVAALEQMNVPYRIADGGSAILVPANHVHDVRLRLASQ 110 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP N G+EL + FG++ F++++ R LEGE+ RTIQSI + AAR+H+ MP Sbjct: 111 GLPKGG-NIGFELLEN-QKFGVSQFVEQVNFQRGLEGELERTIQSIGAVQAARIHLAMPK 168 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + +PTASVM+ RA++ + AI HLVA++VP L +VTV+D G Sbjct: 169 PTVFTRDQQKPTASVMLNLHPGRALD---QRQVSAIVHLVASSVPELPTSNVTVVDQNGN 225 Query: 216 LLTANEME----RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ 271 LL+ N + + L V +Q I + +A +G N + AE++ Sbjct: 226 LLSDNGKDAGNHYQLDPTQLKYVDELQQNIARRVESIIAPLVGAKNVHAEASAEVDFSMV 285 Query: 272 QIREIVYDPDSKVERSIRLSKDAQRSE--------------TSQPESAVTVEQNMPHVSD 317 + +Y P+ + + S S+ T+QP + T P V+ Sbjct: 286 EQAAEIYKPNQAPDSAAIRSSQTNESQTLPGQGVGGVPGALTNQPPAPATA----PIVAP 341 Query: 318 RKVPLPRSLEN-------------------TDKKEEQSNYEINTKSIATTHDNYKLERLS 358 P + N ++ +NYE++ ++RL+ Sbjct: 342 GTEPTTTTNANVVTTTTTTPPGTTVTTPVMNSERNTTTNYEVDKTIRYQQQPMGGIKRLT 401 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 +AVVVN + + G+ + D +I+ + A G N RGD++++ + F+ Sbjct: 402 VAVVVNHKQEVDAQGKVITRPLTDDEKTQISDLAKQAMGFNEERGDSLSVVNGSFM 457 >gi|307312476|ref|ZP_07592110.1| flagellar M-ring protein FliF [Escherichia coli W] gi|306907647|gb|EFN38150.1| flagellar M-ring protein FliF [Escherichia coli W] gi|315061238|gb|ADT75565.1| flagellar basal-body MS-ring and collar protein [Escherichia coli W] gi|323378185|gb|ADX50453.1| flagellar M-ring protein FliF [Escherichia coli KO11] Length = 552 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 118/418 (28%), Positives = 199/418 (47%), Gaps = 40/418 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +M+ + + +P Y L+ L D I L++ NI +R+S+ + Sbjct: 25 LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRVSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ + S+ SE S P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429 >gi|310767344|gb|ADP12294.1| flagellar MS-ring protein [Erwinia sp. Ejp617] Length = 569 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 141/554 (25%), Positives = 258/554 (46%), Gaps = 70/554 (12%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y L+ L D I L++ N+ ++ D G ++ VP++ V + R+ LA+Q Sbjct: 46 LWAKQPDYRVLFSNLSNEDGGTIVTQLTQMNVPYKFDDQGGALLVPAAQVHELRLRLASQ 105 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL DK FG++ F +++ RALEGE+ARTI ++ + ARVH+ MP Sbjct: 106 GLPKGGA-VGFELLDK-EKFGISQFSEQVNYQRALEGELARTISTLGPVKDARVHLAMPK 163 Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + P+ASV + A+ P A+ H+V+++V + G+VTV+D G+LL Sbjct: 164 PTLFVREQKSPSASVTL-ALQPGRALDEGQINAVVHMVSSSVAGMPPGNVTVVDQAGRLL 222 Query: 218 TANEM-ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 T N+ R++ L ++ + I L LG N + V A+++ + ++ + Sbjct: 223 TQNDSGGRDLNDTQLKYANDVETRYQQRIEAILGPILGNGNVHAQVTAQIDFNKREKTDE 282 Query: 277 VYDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPHVSDRKVPLP---------- 323 Y P+S+ ++ S+ SE SA V N P ++ P Sbjct: 283 QYSPNSQPDQQAIRSRQTSNSEQLGGSSAGGVPGALSNQPAPANAAPVTPANNNANNANA 342 Query: 324 ----------------RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367 +++ + + + +NYE+N + T + +++RLS+AVVVN Sbjct: 343 NANNGQPANNAANAAQKTVPSNTRSDNTTNYEVNRTILHTKMNVGEVQRLSVAVVVNY-- 400 Query: 368 LTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG- 422 R+ GK D+ + +I + A G + +RGD++ + + F +N + Sbjct: 401 ------RADAAGKPIALKDAQIKQIENLTREAMGFSEQRGDSLNVVNSQFTDNSDLAAEL 454 Query: 423 --TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 Q +F+D L NA +L+ L+V F+ R+L + +K E + Sbjct: 455 PFWKQPAFIDQL-------FNAGRWLL-VLIVAFI---LYRKLVSPQLRRKAEQQKAAEE 503 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 + + + T ++ +A+ S ++D + R Q R+++ V Q R+ M E + Sbjct: 504 AAINAARSSTR----DEGVAV-SLSKDELNQERKSQHRMSAEVLSQ---RIREMSENDPR 555 Query: 541 RFAKILRKWARSEI 554 A ++R+W + E+ Sbjct: 556 VVALVIRQWMKDEL 569 >gi|300923899|ref|ZP_07139914.1| flagellar M-ring protein FliF [Escherichia coli MS 182-1] gi|300419862|gb|EFK03173.1| flagellar M-ring protein FliF [Escherichia coli MS 182-1] Length = 552 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 118/418 (28%), Positives = 200/418 (47%), Gaps = 40/418 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +M+ + + +P Y L+ L D I L++ NI +R+S+ + Sbjct: 25 LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRVSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKEARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ ++ S+ SE S P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPVPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429 >gi|323977881|gb|EGB72967.1| flagellar M-ring protein FliF [Escherichia coli TW10509] Length = 552 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 118/418 (28%), Positives = 199/418 (47%), Gaps = 40/418 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +M+ + + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ ++ S+ SE S P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDKSQAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNNGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429 >gi|312946531|gb|ADR27358.1| flagellar MS-ring protein [Escherichia coli O83:H1 str. NRG 857C] Length = 552 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 118/418 (28%), Positives = 199/418 (47%), Gaps = 40/418 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +M+ + + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ ++ S+ SE S P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429 >gi|238920311|ref|YP_002933826.1| flagellar MS-ring protein [Edwardsiella ictaluri 93-146] gi|238869880|gb|ACR69591.1| flagellar M-ring protein FliF, putative [Edwardsiella ictaluri 93-146] Length = 569 Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 126/450 (28%), Positives = 222/450 (49%), Gaps = 53/450 (11%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 L+LAS + + I++ +A + +P Y LY + D I L++ NI +R ++NG++ Sbjct: 35 LLLASAVAIAIVVVLA--LWARAPDYRVLYSNISDRDGGAIVTQLTQMNIPYRFANNGTT 92 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 + VP+S V R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE+ART Sbjct: 93 LMVPASDVYATRLKLAQQGLPRGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELART 150 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I+++ +V+ARV + P F + +P+ASV + V + AI ++V+++V Sbjct: 151 IETLGPVVSARVLLAEPKPSLFVREQKQPSASVTLTLEPGRVLDDGQINAIVYMVSSSVA 210 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VTV+D G LL+ + R++ L ++ ++ I L LG N Sbjct: 211 GLPPGNVTVVDQYGHLLSQPDGTGRDLNAAQLKFTAEVESRLQRRIETILQPMLGNGNVH 270 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS---QPESAVTVEQNMP--- 313 + V A+L+ +++ + Y P+ ++ SK +S+ S Q N P Sbjct: 271 AQVTAQLDFASREQTDEEYTPNQPPNQAAVRSKQINQSDQSGGLQSGGVPGALSNEPAPA 330 Query: 314 ---HVSDRKVPLPRSLENTD----------------------KKEEQSNYEINTKSIATT 348 H++ + PRS + + +++E NYE++ T Sbjct: 331 PTGHINGK----PRSAQGGNGAANRSNAVSNNGRQSSRSENFRRDETINYEVDRTIRHTK 386 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 +ERLS+AVVVN T+ + Q K+D +IN +V A G + RGDT+++ Sbjct: 387 ARAGTIERLSVAVVVNYASDTKGKEVALSQQKMD----QINNLVREAMGFSQSRGDTLSV 442 Query: 409 TSMDFLENQLFNSG-----TVQVSFMDILS 433 + F N + ++G + +F+D+L+ Sbjct: 443 VNTPF--NSVEDNGGELPFWQKQAFIDLLT 470 >gi|156933442|ref|YP_001437358.1| flagellar MS-ring protein [Cronobacter sakazakii ATCC BAA-894] gi|156531696|gb|ABU76522.1| hypothetical protein ESA_01260 [Cronobacter sakazakii ATCC BAA-894] Length = 565 Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 120/409 (29%), Positives = 198/409 (48%), Gaps = 48/409 (11%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + P Y LY L D I L++ NI + +DNG+SI VP+ V R+ LA QG Sbjct: 46 WAKQPEYRVLYSNLSDQDGGAIVTQLTQMNIPYNFADNGASIMVPAEKVYDLRLRLAQQG 105 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + ARVH+ MP Sbjct: 106 LPKGGA-VGFELMDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKNARVHLAMPKP 163 Query: 162 GSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 F + P+ASV + RA++ AI H+V++AV L G+VT++D TG+L Sbjct: 164 SLFVREQKSPSASVTLNLQPGRALDDG---QVAAIVHMVSSAVAGLPPGNVTLVDQTGRL 220 Query: 217 LT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LT + R++ L ++ I+ I LA +G N + V A+++ ++ E Sbjct: 221 LTQSGTGARDLNDAQLKYASDVEGRIQRRIESILAPIVGTGNVHAQVTAQIDFSNKEQTE 280 Query: 276 IVY----DPDSKVERSIRLSKDAQ----------RSETSQPESAVTVEQNMP-------- 313 Y DP RS +L+ + Q + ++QP A + + P Sbjct: 281 EQYRPNSDPSQMAVRSRQLNTNDQVGGAYPGGVPGALSNQPAPANSAPIDAPAGQNNGQN 340 Query: 314 -------HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 S ++ +++E +NYE++ T + ++RLS+AVVVN Sbjct: 341 ANGQNAQRTQSTSTAGASSGPHSSQRDETTNYEVDRTIRHTKMNVGDVQRLSVAVVVNYR 400 Query: 367 RL--TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 +L + L +A+Q L +I + A G + +RGDT+ + + F Sbjct: 401 QLGNGKPLALTAEQ------LKQIEDLTREAMGYSDKRGDTLNVVNSQF 443 >gi|317121815|ref|YP_004101818.1| flagellar M-ring protein FliF [Thermaerobacter marianensis DSM 12885] gi|315591795|gb|ADU51091.1| flagellar M-ring protein FliF [Thermaerobacter marianensis DSM 12885] Length = 560 Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 112/340 (32%), Positives = 175/340 (51%), Gaps = 26/340 (7%) Query: 44 NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP 103 +P ++ L+ +L+ +D I L E + ++++ G +I VP + V + R+ LAAQGLP Sbjct: 59 GNPRWEPLFTRLDPADAAAIVSQLEEKGVPYQLAQGGQAILVPGTEVDRLRLELAAQGLP 118 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 + G EL D + G T F +++ VR L+GE+ARTI + G+ AARVH+V+P+ Sbjct: 119 REGT-VGLELMDSI-PMGATEFERQVQYVRGLQGELARTISRLDGVEAARVHVVLPEDSP 176 Query: 164 FRKIGA-RPTASVMIRAINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F +G RP + ++ + P + E +R HLVA+AV L DVTV+D+TG+LL+A Sbjct: 177 F--VGQRRPATAAVLVQLKPGASLAPEQVRSIMHLVASAVEGLKPEDVTVVDTTGRLLSA 234 Query: 220 NEMERN-----ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 + G I + + E++ ++ L LG N + V AELN D Q I Sbjct: 235 EVPPEEGQGAVVQGDRFEIERRFEQELQQSLQTLLEQVLGPGNVIARVNAELNFDQQVIE 294 Query: 275 EIVYDPDSKVERSI-RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVP-LPRSLENT--- 329 ++ P + + I R ++ Q + T Q V +P D +P P+ + T Sbjct: 295 RHLFQPPADGGQGILRSIQELQETFTGQ-----GVPVGVP--GDSNIPTYPQLVGGTGQY 347 Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369 + E +NYEIN + RLS+AVVVN G LT Sbjct: 348 QRTERTANYEINEVVDRVQVAPGAVRRLSVAVVVN-GDLT 386 >gi|323961982|gb|EGB57581.1| flagellar M-ring protein FliF [Escherichia coli H489] Length = 552 Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 118/418 (28%), Positives = 199/418 (47%), Gaps = 40/418 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +M+ + + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIVAGSAAVAVMVALI--LWAKTPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ ++ S+ SE S P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429 >gi|324005863|gb|EGB75082.1| flagellar M-ring protein FliF [Escherichia coli MS 57-2] Length = 552 Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 118/418 (28%), Positives = 199/418 (47%), Gaps = 40/418 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +M+ + + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ ++ S+ SE S P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429 >gi|15802373|ref|NP_288399.1| flagellar MS-ring protein [Escherichia coli O157:H7 EDL933] gi|15831931|ref|NP_310704.1| flagellar MS-ring protein [Escherichia coli O157:H7 str. Sakai] gi|168751866|ref|ZP_02776888.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4113] gi|168758251|ref|ZP_02783258.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4401] gi|168764438|ref|ZP_02789445.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4501] gi|168771544|ref|ZP_02796551.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4486] gi|168777364|ref|ZP_02802371.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4196] gi|168783334|ref|ZP_02808341.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4076] gi|168790304|ref|ZP_02815311.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC869] gi|168802284|ref|ZP_02827291.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC508] gi|195939244|ref|ZP_03084626.1| flagellar MS-ring protein [Escherichia coli O157:H7 str. EC4024] gi|208810543|ref|ZP_03252419.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4206] gi|208817037|ref|ZP_03258157.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4045] gi|208820542|ref|ZP_03260862.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4042] gi|209395809|ref|YP_002271054.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4115] gi|217328740|ref|ZP_03444821.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. TW14588] gi|254793588|ref|YP_003078425.1| flagellar MS-ring protein [Escherichia coli O157:H7 str. TW14359] gi|261227567|ref|ZP_05941848.1| flagellar basal-body MS-ring and collar protein [Escherichia coli O157:H7 str. FRIK2000] gi|261254609|ref|ZP_05947142.1| flagellar basal-body MS-ring and collar protein [Escherichia coli O157:H7 str. FRIK966] gi|12516042|gb|AAG56953.1|AE005416_7 flagellar biosynthesis; basal-body MS(membrane and supramembrane)-ring and collar protein [Escherichia coli O157:H7 str. EDL933] gi|13362145|dbj|BAB36100.1| flagellar hook-basal body MS ring protein FliF [Escherichia coli O157:H7 str. Sakai] gi|187767394|gb|EDU31238.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4196] gi|188014158|gb|EDU52280.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4113] gi|188999271|gb|EDU68257.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4076] gi|189354893|gb|EDU73312.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4401] gi|189359720|gb|EDU78139.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4486] gi|189365550|gb|EDU83966.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4501] gi|189370217|gb|EDU88633.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC869] gi|189375710|gb|EDU94126.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC508] gi|208725059|gb|EDZ74766.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4206] gi|208731380|gb|EDZ80069.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4045] gi|208740665|gb|EDZ88347.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4042] gi|209157209|gb|ACI34642.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4115] gi|209766878|gb|ACI81751.1| flagellar hook-basal body MS ring protein FliF [Escherichia coli] gi|209766880|gb|ACI81752.1| flagellar hook-basal body MS ring protein FliF [Escherichia coli] gi|209766882|gb|ACI81753.1| flagellar hook-basal body MS ring protein FliF [Escherichia coli] gi|209766886|gb|ACI81755.1| flagellar hook-basal body MS ring protein FliF [Escherichia coli] gi|217318087|gb|EEC26514.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. TW14588] gi|254592988|gb|ACT72349.1| flagellar basal-body MS-ring and collar protein [Escherichia coli O157:H7 str. TW14359] gi|320191912|gb|EFW66559.1| Flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC1212] gi|326342348|gb|EGD66129.1| Flagellar M-ring protein FliF [Escherichia coli O157:H7 str. 1044] gi|326344853|gb|EGD68600.1| Flagellar M-ring protein FliF [Escherichia coli O157:H7 str. 1125] Length = 552 Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 118/418 (28%), Positives = 199/418 (47%), Gaps = 40/418 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +M+ + + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSWRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ ++ S+ SE S P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429 >gi|82543597|ref|YP_407544.1| flagellar MS-ring protein [Shigella boydii Sb227] gi|81245008|gb|ABB65716.1| FliF [Shigella boydii Sb227] gi|320186947|gb|EFW61661.1| Flagellar M-ring protein FliF [Shigella flexneri CDC 796-83] gi|332096898|gb|EGJ01887.1| flagellar M-ring protein FliF [Shigella boydii 3594-74] Length = 552 Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 118/418 (28%), Positives = 198/418 (47%), Gaps = 40/418 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +M+ + + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTLSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ + S+ SE S P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429 >gi|323186814|gb|EFZ72134.1| flagellar M-ring protein FliF [Escherichia coli RN587/1] Length = 552 Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 118/418 (28%), Positives = 199/418 (47%), Gaps = 40/418 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +M+ + + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ ++ S+ SE S P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDETQAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPTNQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEALTREAMGFSEKRGDSLNVVNSPF 429 >gi|320182746|gb|EFW57630.1| Flagellar M-ring protein FliF [Shigella boydii ATCC 9905] Length = 552 Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 118/418 (28%), Positives = 199/418 (47%), Gaps = 40/418 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +M+ + + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ ++ S+ SE S P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429 >gi|218689933|ref|YP_002398145.1| flagellar MS-ring protein [Escherichia coli ED1a] gi|291283115|ref|YP_003499933.1| Flagellar M-ring protein FliF precursor [Escherichia coli O55:H7 str. CB9615] gi|293415248|ref|ZP_06657891.1| flagellar M-ring protein FliF [Escherichia coli B185] gi|301644603|ref|ZP_07244592.1| flagellar M-ring protein FliF [Escherichia coli MS 146-1] gi|331677820|ref|ZP_08378495.1| flagellar M-ring protein FliF [Escherichia coli H591] gi|209766884|gb|ACI81754.1| flagellar hook-basal body MS ring protein FliF [Escherichia coli] gi|218427497|emb|CAR08270.1| flagellar basal-body MS-ring and collar protein [Escherichia coli ED1a] gi|290762988|gb|ADD56949.1| Flagellar M-ring protein FliF precursor [Escherichia coli O55:H7 str. CB9615] gi|291432896|gb|EFF05875.1| flagellar M-ring protein FliF [Escherichia coli B185] gi|301077078|gb|EFK91884.1| flagellar M-ring protein FliF [Escherichia coli MS 146-1] gi|320641786|gb|EFX11174.1| flagellar MS-ring protein [Escherichia coli O157:H7 str. G5101] gi|320647145|gb|EFX15978.1| flagellar MS-ring protein [Escherichia coli O157:H- str. 493-89] gi|320652429|gb|EFX20727.1| flagellar MS-ring protein [Escherichia coli O157:H- str. H 2687] gi|320658031|gb|EFX25793.1| flagellar MS-ring protein [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658603|gb|EFX26297.1| flagellar MS-ring protein [Escherichia coli O55:H7 str. USDA 5905] gi|320668501|gb|EFX35328.1| flagellar MS-ring protein [Escherichia coli O157:H7 str. LSU-61] gi|331074280|gb|EGI45600.1| flagellar M-ring protein FliF [Escherichia coli H591] Length = 552 Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 118/418 (28%), Positives = 199/418 (47%), Gaps = 40/418 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +M+ + + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ ++ S+ SE S P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429 >gi|297538194|ref|YP_003673963.1| flagellar M-ring protein FliF [Methylotenera sp. 301] gi|297257541|gb|ADI29386.1| flagellar M-ring protein FliF [Methylotenera sp. 301] Length = 551 Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 113/392 (28%), Positives = 191/392 (48%), Gaps = 22/392 (5%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y L+ D I L + N+ ++ SD+G++I VP+S V +AR+ LA+ Sbjct: 47 LWSQQPDYRVLFSNYTDKDGGAIVAELEKMNVPYKFSDSGTAILVPASQVHQARLKLASD 106 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP N G+E+ + FG++ F++++ RALEGE+ R+IQSI + AR+H+ +P Sbjct: 107 GLPKGG-NIGFEILEN-QKFGVSQFVEQVNFQRALEGELERSIQSIGAVETARIHLAIPK 164 Query: 161 MGSFRKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL- 217 F + PTASV+ +RA + A+ HLVA++VPNL +VTV+D G LL Sbjct: 165 ASVFVRDQQSPTASVLLNLRAGRSLDAQQVGAVVHLVASSVPNLPAANVTVVDQNGNLLS 224 Query: 218 -TANEMERNILGKS-LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 T+ +M N L + L + IQ I + + +G N R+ AE++ + + Sbjct: 225 DTSKKMGANNLDPTQLKYIDDIQQSIIKRVESIITPIVGAKNVRAEASAEIDFSSLEQAA 284 Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPHVSDRKVPLPRSLEN---- 328 +Y P+ K + + S + S TS +A V N P + P+ Sbjct: 285 EIYKPNQKPDDAAIRSLQSNESLTSNGGAATGVPGALSNQPP-PNATAPITTPAGAAPGA 343 Query: 329 -------TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI 381 ++K +N+E++ + ++RL++AVVVN + + G+ + Sbjct: 344 TAEAAPVNNQKNTTTNFEVDKTVRYSQQGMGGIKRLNVAVVVNNMPVVDKKGKVTYRPLT 403 Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 + +IN + A G N RGD +T+ + F Sbjct: 404 AAEKTQINDLAMQAMGFNKERGDALTVVNSSF 435 >gi|324114219|gb|EGC08192.1| flagellar M-ring protein FliF [Escherichia fergusonii B253] Length = 552 Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 121/419 (28%), Positives = 201/419 (47%), Gaps = 42/419 (10%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +++ + + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIVAGSAAVAVIVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D +G LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNVH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS--------------QPESA 305 + V A+L+ +++ E Y P+ ++ S+ SE S QP A Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDQSQATLRSRQVNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 306 VTVEQNMP---------HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 + + P S PRS + + E SNYE++ T + ++R Sbjct: 321 NSAPISTPPANQNNRQQQTSTSSNSGPRSTQ----RNETSNYEVDRTIRHTKMNVGDVQR 376 Query: 357 LSIAVVVNKGRLTE--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 LS+AVVVN + L SA+Q + +I + A G + +RGD++ + + F Sbjct: 377 LSVAVVVNYKATPDGKPLPLSAEQ------MKQIEDLTREAMGFSEKRGDSLNVVNSPF 429 >gi|331653350|ref|ZP_08354355.1| flagellar M-ring protein FliF [Escherichia coli M718] gi|331049448|gb|EGI21520.1| flagellar M-ring protein FliF [Escherichia coli M718] Length = 552 Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 118/418 (28%), Positives = 198/418 (47%), Gaps = 40/418 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +M+ + + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQFNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGKGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ ++ S+ SE S P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429 >gi|317052367|ref|YP_004113483.1| flagellar M-ring protein FliF [Desulfurispirillum indicum S5] gi|316947451|gb|ADU66927.1| flagellar M-ring protein FliF [Desulfurispirillum indicum S5] Length = 558 Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 129/419 (30%), Positives = 213/419 (50%), Gaps = 35/419 (8%) Query: 17 LGRTRILILASVI---LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73 L RT+ + LA VI ++ I+ + + P L+ L + D ++ L+E + Sbjct: 19 LSRTQQITLALVIGASVITIITLIIWAVVASRPGNQVLFSNLAMEDAGEVAAKLAELRVP 78 Query: 74 FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 + I ++G +I VP ++V + R++LA QGLP S G+E+FD G+T F+Q++ R Sbjct: 79 YEIHNDGRTILVPGNVVHETRLNLAQQGLP-RGSGVGFEIFDSA-GIGMTEFIQKVNFRR 136 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIR- 192 AL+GE+ RTI +I GI +ARVHI +P+ F ASV +R ++P S + ++ Sbjct: 137 ALQGELGRTISAIDGIESARVHIALPERSLFISQDRGAEASVALR-LSPHTRLSGDQVKG 195 Query: 193 --HLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI-QHEIEMNINKA- 248 HLV+++V L VTV+D G++L ER+ +LS+ Q + Q +E N+ A Sbjct: 196 IIHLVSSSVEGLTPEGVTVVDEQGRILNDLIQERS-EESTLSVTQLMYQRNMERNLQIAL 254 Query: 249 ---LAAFLGVDNFRSAVVAELNMDT--QQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 L + LG N S V EL+ D QQI YDP + V RS QR E + E Sbjct: 255 DNLLVSVLGQGNSYSNVSLELDFDKVEQQIE--AYDP-ANVPRS------EQRIE--ERE 303 Query: 304 SAVTVEQNMP----HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + +P +++D+ P + ++ E +NYE+ T +++RL++ Sbjct: 304 QGREAQGGIPGVRANIADQDDPEAGLMTTRSREVETTNYEVGRTLTQITRSRGQIKRLTV 363 Query: 360 AVVVNKGRLTEV---LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 AV VN + + + + Q + L +I +V +A G N RGD + +T++ F E Sbjct: 364 AVAVNGNYVQQQADGVSQVVYQPRSSEELDKITALVQSAIGYNEGRGDRVVVTNLQFGE 422 >gi|312973845|ref|ZP_07788017.1| flagellar M-ring protein FliF [Escherichia coli 1827-70] gi|310332440|gb|EFP99675.1| flagellar M-ring protein FliF [Escherichia coli 1827-70] Length = 552 Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 118/418 (28%), Positives = 198/418 (47%), Gaps = 40/418 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +M+ + + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQFNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGKGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ ++ S+ SE S P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429 >gi|99082787|ref|YP_614941.1| flagellar MS-ring protein [Ruegeria sp. TM1040] gi|99039067|gb|ABF65679.1| Flagellar M-ring protein [Ruegeria sp. TM1040] Length = 571 Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 128/398 (32%), Positives = 202/398 (50%), Gaps = 18/398 (4%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 R R++ + + + V I F N P LY LE S + AL ++ +D+ + Sbjct: 27 RKRMMAIGATLAV-IFTFFLMSLVANKPSMQLLYAGLESSSAGDVVSALEQSGVDYEV-- 83 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 G SI VPSS + R+ LA+QGLP++ GYEL D ++ FG TS M + RA EGE Sbjct: 84 RGGSIYVPSSKRDELRMTLASQGLPANGGK-GYELLDSLSGFGTTSQMFDAAYWRAKEGE 142 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAA 197 +ARTI + + ARVHI F++ PTASV + + + S A AIR LVA+ Sbjct: 143 LARTIVANPHVSQARVHIANTGSNPFQRT-IEPTASVSVTPMGSPITPSQANAIRFLVAS 201 Query: 198 AVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDN 257 AV L + +V V+D+ G L+ + E + Q ++ + + + A +G N Sbjct: 202 AVAGLAVDNVAVIDANGALIGSPEAAAAAGAGTDDRSQTLRERVL----RLVEARVGQGN 257 Query: 258 FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA-VTVEQNMPHVS 316 + E DT+ IRE DP S+V S + +R ++SQ ++ VTV N+P Sbjct: 258 AVVEISVETITDTESIREKRVDPQSRVAISTDVE---ERIDSSQNQAGEVTVASNIPDGD 314 Query: 317 DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL-GRS 375 ++ +T+ E+ NYEI+ ++RL++AV++N G TE G + Sbjct: 315 AGNGEGSKA--STNATRERVNYEISETEKEIVRGPGAIKRLTVAVLIN-GVTTETAEGEA 371 Query: 376 ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 A + + + L + +++SAA G ++ RGD IT+ SMD Sbjct: 372 AFEPRPEEELEALRELISAAVGFDAERGDVITLKSMDL 409 >gi|291288216|ref|YP_003505032.1| flagellar M-ring protein FliF [Denitrovibrio acetiphilus DSM 12809] gi|290885376|gb|ADD69076.1| flagellar M-ring protein FliF [Denitrovibrio acetiphilus DSM 12809] Length = 555 Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 132/476 (27%), Positives = 233/476 (48%), Gaps = 27/476 (5%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 MA+ D QF + L + + +A+ + + ++ N P Y L+ + D Sbjct: 1 MALSDIASQFKDTYLKLSLLQKISVAAALAAVFISVAVIVYWANRPVYKTLFAGMTQDDA 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 + +L E I +++ D G+ I++P V + R++LA + +P +G ELFDK +SF Sbjct: 61 ALVVDSLKEQRIPYKLEDGGAKITIPDQYVYETRLNLAKENIPRGGG-AGLELFDK-SSF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 G+T FMQ ++ RAL+GE+ARTI ++ I ARVH+ + F A+V++R Sbjct: 119 GMTEFMQNVSYQRALQGELARTITALKEIQEARVHLTVSKDRLFIADEEASKAAVVLRLR 178 Query: 181 NPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN----ILGKSLSIV 234 + + AE AI LV+ AV L +V ++D+ G+LL+ E N + L Sbjct: 179 SGASLGRAEVQAIASLVSGAVKGLSPENVQIVDTQGRLLSEFLDEENSPLMMTQSQLEYT 238 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 + I+ ++E +N+ L A LG N + V AE++ + + + + Y D+ V RS + Sbjct: 239 KKIERDLERKVNEILGATLGKGNAVAKVTAEIDFNKRDVTKEEYG-DTPVLRS---QQSM 294 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-K 353 + S T++P+ + ++++ + + +K E+ N+EIN K+I Y Sbjct: 295 EISSTNKPDGPQGIPGVQSNLAEPDIGTAGRNQEYNKTEDTQNFEIN-KTITVEQKAYGT 353 Query: 354 LERLSIAVVVN--KGRLTEVLGRSA--DQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 ++R+++AVVV+ K R + G S Q + D + I +V+ A G N RGD I +T Sbjct: 354 IDRVTVAVVVDDRKIRQQDDNGESTIVSQRRSDDEMRSIRNLVAMAVGYNEPRGDQIEVT 413 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALV--FLVGTLLVTFLGLHALRRL 463 ++ F T + D L R + +V +L+ L+V +RR+ Sbjct: 414 NISF-------DTTSKDHEYDTLKREKTMELVGMVSKYLLAALIVLLFYFLVIRRI 462 >gi|281179000|dbj|BAI55330.1| flagellar hook-basal body MS ring protein FliF [Escherichia coli SE15] Length = 552 Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 118/418 (28%), Positives = 198/418 (47%), Gaps = 40/418 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +M+ + + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ + S+ SE S P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEALTREAMGFSEKRGDSLNVVNSPF 429 >gi|218705431|ref|YP_002412950.1| flagellar MS-ring protein [Escherichia coli UMN026] gi|293405421|ref|ZP_06649413.1| fliF [Escherichia coli FVEC1412] gi|298381064|ref|ZP_06990663.1| flagellar M-ring protein [Escherichia coli FVEC1302] gi|218432528|emb|CAR13421.1| flagellar basal-body MS-ring and collar protein [Escherichia coli UMN026] gi|291427629|gb|EFF00656.1| fliF [Escherichia coli FVEC1412] gi|298278506|gb|EFI20020.1| flagellar M-ring protein [Escherichia coli FVEC1302] Length = 552 Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 118/418 (28%), Positives = 198/418 (47%), Gaps = 40/418 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +M+ + + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ + S+ SE S P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429 >gi|300920157|ref|ZP_07136607.1| flagellar M-ring protein FliF [Escherichia coli MS 115-1] gi|300412814|gb|EFJ96124.1| flagellar M-ring protein FliF [Escherichia coli MS 115-1] Length = 552 Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 118/418 (28%), Positives = 198/418 (47%), Gaps = 40/418 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +M+ + + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ + S+ SE S P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429 >gi|91211156|ref|YP_541142.1| flagellar MS-ring protein [Escherichia coli UTI89] gi|215487138|ref|YP_002329569.1| flagellar MS-ring protein [Escherichia coli O127:H6 str. E2348/69] gi|218558795|ref|YP_002391708.1| flagellar MS-ring protein [Escherichia coli S88] gi|237705897|ref|ZP_04536378.1| flagellar MS-ring protein [Escherichia sp. 3_2_53FAA] gi|300940393|ref|ZP_07154978.1| flagellar M-ring protein FliF [Escherichia coli MS 21-1] gi|312967135|ref|ZP_07781353.1| flagellar M-ring protein FliF [Escherichia coli 2362-75] gi|91072730|gb|ABE07611.1| flagellar M-ring protein [Escherichia coli UTI89] gi|215265210|emb|CAS09600.1| flagellar basal-body MS-ring and collar protein [Escherichia coli O127:H6 str. E2348/69] gi|218365564|emb|CAR03291.1| flagellar basal-body MS-ring and collar protein [Escherichia coli S88] gi|226900654|gb|EEH86913.1| flagellar MS-ring protein [Escherichia sp. 3_2_53FAA] gi|294491623|gb|ADE90379.1| flagellar M-ring protein FliF [Escherichia coli IHE3034] gi|300454787|gb|EFK18280.1| flagellar M-ring protein FliF [Escherichia coli MS 21-1] gi|307626586|gb|ADN70890.1| flagellar MS-ring protein [Escherichia coli UM146] gi|312288599|gb|EFR16501.1| flagellar M-ring protein FliF [Escherichia coli 2362-75] gi|323952431|gb|EGB48304.1| flagellar M-ring protein FliF [Escherichia coli H252] gi|323956334|gb|EGB52077.1| flagellar M-ring protein FliF [Escherichia coli H263] Length = 552 Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 118/418 (28%), Positives = 198/418 (47%), Gaps = 40/418 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +M+ + + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ + S+ SE S P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEALTREAMGFSEKRGDSLNVVNSPF 429 >gi|26248206|ref|NP_754246.1| flagellar MS-ring protein [Escherichia coli CFT073] gi|227885633|ref|ZP_04003438.1| flagellar MS-ring protein [Escherichia coli 83972] gi|300975548|ref|ZP_07173059.1| flagellar M-ring protein FliF [Escherichia coli MS 45-1] gi|301050702|ref|ZP_07197563.1| flagellar M-ring protein FliF [Escherichia coli MS 185-1] gi|306814239|ref|ZP_07448405.1| flagellar MS-ring protein [Escherichia coli NC101] gi|26108610|gb|AAN80813.1|AE016762_66 Flagellar M-ring protein [Escherichia coli CFT073] gi|227837206|gb|EEJ47672.1| flagellar MS-ring protein [Escherichia coli 83972] gi|300297625|gb|EFJ54010.1| flagellar M-ring protein FliF [Escherichia coli MS 185-1] gi|300410317|gb|EFJ93855.1| flagellar M-ring protein FliF [Escherichia coli MS 45-1] gi|305852398|gb|EFM52849.1| flagellar MS-ring protein [Escherichia coli NC101] gi|307553951|gb|ADN46726.1| flagellar M-ring protein FliF [Escherichia coli ABU 83972] gi|315290255|gb|EFU49633.1| flagellar M-ring protein FliF [Escherichia coli MS 153-1] Length = 552 Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 118/418 (28%), Positives = 198/418 (47%), Gaps = 40/418 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +M+ + + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ + S+ SE S P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEALTREAMGFSEKRGDSLNVVNSPF 429 >gi|320175473|gb|EFW50572.1| Flagellar M-ring protein FliF [Shigella dysenteriae CDC 74-1112] Length = 552 Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 118/418 (28%), Positives = 198/418 (47%), Gaps = 40/418 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +M+ + + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ + S+ SE S P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429 >gi|218699502|ref|YP_002407131.1| flagellar MS-ring protein [Escherichia coli IAI39] gi|218369488|emb|CAR17255.1| flagellar basal-body MS-ring and collar protein [Escherichia coli IAI39] Length = 552 Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 118/418 (28%), Positives = 198/418 (47%), Gaps = 40/418 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +M+ + + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ + S+ SE S P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEALTREAMGFSEKRGDSLNVVNSPF 429 >gi|191168288|ref|ZP_03030081.1| flagellar M-ring protein FliF [Escherichia coli B7A] gi|190901660|gb|EDV61416.1| flagellar M-ring protein FliF [Escherichia coli B7A] Length = 552 Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 118/418 (28%), Positives = 199/418 (47%), Gaps = 40/418 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +M+ + + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVNQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ ++ S+ SE S P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429 >gi|16129885|ref|NP_416448.1| flagellar basal-body MS-ring and collar protein [Escherichia coli str. K-12 substr. MG1655] gi|89108770|ref|AP_002550.1| flagellar basal-body MS-ring and collar protein [Escherichia coli str. K-12 substr. W3110] gi|157161409|ref|YP_001458727.1| flagellar MS-ring protein [Escherichia coli HS] gi|170081582|ref|YP_001730902.1| flagellar basal-body MS-ring and collar protein [Escherichia coli str. K-12 substr. DH10B] gi|170682432|ref|YP_001743307.1| flagellar MS-ring protein [Escherichia coli SMS-3-5] gi|193071157|ref|ZP_03052081.1| flagellar M-ring protein FliF [Escherichia coli E110019] gi|218554518|ref|YP_002387431.1| flagellar MS-ring protein [Escherichia coli IAI1] gi|238901143|ref|YP_002926939.1| flagellar basal-body MS-ring and collar protein [Escherichia coli BW2952] gi|253773113|ref|YP_003035944.1| flagellar MS-ring protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|260855913|ref|YP_003229804.1| flagellar basal-body MS-ring and collar protein FliF [Escherichia coli O26:H11 str. 11368] gi|300822292|ref|ZP_07102433.1| flagellar M-ring protein FliF [Escherichia coli MS 119-7] gi|301018212|ref|ZP_07182727.1| flagellar M-ring protein FliF [Escherichia coli MS 69-1] gi|331663434|ref|ZP_08364344.1| flagellar M-ring protein FliF [Escherichia coli TA143] gi|331668629|ref|ZP_08369477.1| flagellar M-ring protein FliF [Escherichia coli TA271] gi|2506421|sp|P25798|FLIF_ECOLI RecName: Full=Flagellar M-ring protein gi|1736604|dbj|BAA15763.1| flagellar basal-body MS-ring and collar protein [Escherichia coli str. K12 substr. W3110] gi|1788248|gb|AAC75005.1| flagellar basal-body MS-ring and collar protein [Escherichia coli str. K-12 substr. MG1655] gi|157067089|gb|ABV06344.1| flagellar M-ring protein FliF [Escherichia coli HS] gi|169889417|gb|ACB03124.1| flagellar basal-body MS-ring and collar protein [Escherichia coli str. K-12 substr. DH10B] gi|170520150|gb|ACB18328.1| flagellar M-ring protein FliF [Escherichia coli SMS-3-5] gi|192955552|gb|EDV86031.1| flagellar M-ring protein FliF [Escherichia coli E110019] gi|218361286|emb|CAQ98870.1| flagellar basal-body MS-ring and collar protein [Escherichia coli IAI1] gi|238861094|gb|ACR63092.1| flagellar basal-body MS-ring and collar protein [Escherichia coli BW2952] gi|253324157|gb|ACT28759.1| flagellar M-ring protein FliF [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|257754562|dbj|BAI26064.1| flagellar basal-body MS-ring and collar protein FliF [Escherichia coli O26:H11 str. 11368] gi|260448949|gb|ACX39371.1| flagellar M-ring protein FliF [Escherichia coli DH1] gi|284921846|emb|CBG34921.1| flagellar M-ring protein [Escherichia coli 042] gi|300399799|gb|EFJ83337.1| flagellar M-ring protein FliF [Escherichia coli MS 69-1] gi|300525175|gb|EFK46244.1| flagellar M-ring protein FliF [Escherichia coli MS 119-7] gi|309702227|emb|CBJ01544.1| flagellar M-ring protein [Escherichia coli ETEC H10407] gi|315136575|dbj|BAJ43734.1| flagellar MS-ring protein [Escherichia coli DH1] gi|323152731|gb|EFZ39003.1| flagellar M-ring protein FliF [Escherichia coli EPECa14] gi|323937208|gb|EGB33488.1| flagellar M-ring protein FliF [Escherichia coli E1520] gi|324118987|gb|EGC12876.1| flagellar M-ring protein FliF [Escherichia coli E1167] gi|331059233|gb|EGI31210.1| flagellar M-ring protein FliF [Escherichia coli TA143] gi|331063823|gb|EGI35734.1| flagellar M-ring protein FliF [Escherichia coli TA271] Length = 552 Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 118/418 (28%), Positives = 198/418 (47%), Gaps = 40/418 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +M+ + + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ + S+ SE S P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429 >gi|332161342|ref|YP_004297919.1| flagellar MS-ring protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325665572|gb|ADZ42216.1| flagellar MS-ring protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863306|emb|CBX73430.1| flagellar M-ring protein [Yersinia enterocolitica W22703] Length = 559 Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 135/536 (25%), Positives = 243/536 (45%), Gaps = 54/536 (10%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + SP Y LY L D I L++ NI +R +DNG ++ +P+ V + R+ LA Q Sbjct: 46 LWAKSPDYRVLYSNLNDRDGGDIVTQLTQLNIPYRFADNGGALLIPADKVHETRLRLAQQ 105 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI ++ ++ RVH+ MP Sbjct: 106 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIGTLGPVLNVRVHLAMPK 163 Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + PTASV + A+ P AI ++V+++V L +VTV+D TG+LL Sbjct: 164 PSLFVREQKSPTASVTL-ALQPGRALDDGQINAIVYMVSSSVAGLPPANVTVVDQTGRLL 222 Query: 218 T-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 T ++ R++ L +++ + I LA +G N + V A+++ +++ + Sbjct: 223 TQSDSAGRDLNAAQLKFTNEVENRFQRRIETILAPMVGSGNVHAQVTAQVDFASREQTDE 282 Query: 277 VYDPDSKVERSIRLSKDAQRSE------------------TSQPESAVTVEQNMPHVSDR 318 Y P+ + S+ SE ++ P + + V Q P Sbjct: 283 EYKPNQAANQGAVRSQQVSTSEQLGGTNVGGVPGALSNQPSATPVAPIEVPQATPAAGAG 342 Query: 319 KVPLPRSLENT---DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG--RLTEVLG 373 T + ++ +N+E++ T ++RLS+AVVVN G + + + Sbjct: 343 AAANAAKQTATSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVNYGSDKAGKPIA 402 Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433 S DQ LA++ + A G ++ RGDT+ + + F N ++ + F S Sbjct: 403 LSKDQ------LAQVESLTREAMGFSTVRGDTLNVVNTPF--NATDDASGSNLPFWQQPS 454 Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493 F ++N +L+ L+ L +R L I ++ + S+ + + T Sbjct: 455 -FFDQLLNIGRYLLILLVAWILWRKLVRPL--IAKKQEADKAAASVNNIVQAAQTTETAK 511 Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549 + +AL N Q R+++ V Q R+ + + + A ++R+W Sbjct: 512 QTKEELALRKKN----------QQRVSAEVQAQ---RIRELADKDPRIVALVIRQW 554 >gi|320194349|gb|EFW68980.1| Flagellar M-ring protein FliF [Escherichia coli WV_060327] Length = 552 Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 119/416 (28%), Positives = 199/416 (47%), Gaps = 36/416 (8%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +M+ + + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ + S+ SE S P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLT--EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + L S +Q + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPGGKPLPLSNEQ------MKQIEALTREAMGFSEKRGDSLNVVNSPF 429 >gi|37525871|ref|NP_929215.1| flagellar MS-ring protein [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785300|emb|CAE14241.1| flagellar basal-body M-ring protein [Photorhabdus luminescens subsp. laumondii TTO1] Length = 567 Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 126/424 (29%), Positives = 207/424 (48%), Gaps = 40/424 (9%) Query: 26 ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISV 85 A+V +V I LF+ ++ SP Y LY L D I L++ NI +R ++NG++I + Sbjct: 36 AAVAIV-IALFL----WLRSPDYRVLYSNLSDKDGGDIVTQLTQLNIPYRFAENGAAIMI 90 Query: 86 PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145 P+ V + R+ LA QGLP + +G+EL DK FG++ F +++ RALEGE++RTI+S Sbjct: 91 PAEQVHETRLRLAQQGLPKGGA-AGFELLDK-EKFGISQFSEQVNYQRALEGELSRTIES 148 Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLD 203 + + ARVH+ +P F + P+ASV + + + AI H+V+++V L Sbjct: 149 LGPVQNARVHLALPKPSLFVREQKSPSASVTVGLLQGRTLDEGQINAIVHMVSSSVAGLP 208 Query: 204 MGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAV 262 G+VT++D TG+LLT A+ R++ L +Q +++ + I L +G N + V Sbjct: 209 PGNVTIVDQTGRLLTQADATGRDLNTSQLKYIQEVENRFQHRIETILTPVVGRGNVHAQV 268 Query: 263 VAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS--------------QPESAV-- 306 A+++ ++ Y P+ ++ SK SE S QP S Sbjct: 269 TAQVDFSRREETAEEYKPNQPPNQAAVRSKQLSESEQSGGPQVGGIPGALSNQPSSPPSA 328 Query: 307 ------TVEQNMPHVSDRKV-PLPRSLENT------DKKEEQSNYEINTKSIATTHDNYK 353 T E N SD+K S E T ++++E +NYE++ Sbjct: 329 PIDKPNTKENNKNDKSDKKASSAGNSNERTVNSNRNNRRDETTNYEVDRTIRHVQQQAGG 388 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 +ERLS+AVVVN E Q L +I + A G + RGD++ + + F Sbjct: 389 VERLSVAVVVNY-VTVEGKNGPETQALTPEQLTKIEALTREAMGFSKERGDSLNVVNTPF 447 Query: 414 LENQ 417 E++ Sbjct: 448 TESK 451 >gi|205357292|ref|ZP_02346550.2| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205322643|gb|EDZ10482.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 585 Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 122/415 (29%), Positives = 198/415 (47%), Gaps = 57/415 (13%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 63 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 122 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 123 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 180 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + P+ASV + RA++ A+ HLV++AV L G+VT++D +G Sbjct: 181 PSLFVREQKSPSASVTVTLEPGRALD---EGQISAVVHLVSSAVAGLPPGNVTLVDQSGH 237 Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT +N R++ L ++ I+ I L+ +G N + V A+L+ ++ Sbjct: 238 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 297 Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309 E Y P+ ++ S+ SE ++QP E+ + Sbjct: 298 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 357 Query: 310 QNMPHVSDRKVPL---------PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 QN P S PRS + + E SNYE++ T + +ERLS+A Sbjct: 358 QNTPQTSTSTSTSTSTNSNSAGPRSTQ----RNETSNYEVDRTIRHTKMNVGDIERLSVA 413 Query: 361 VVVNKGRLTE--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 VVVN L + L +ADQ K +I + A G + +RGDT+ + + F Sbjct: 414 VVVNYKTLADGKPLPLTADQMK------QIEDLTREAMGFSDKRGDTLNVVNSPF 462 >gi|258404702|ref|YP_003197444.1| flagellar M-ring protein FliF [Desulfohalobium retbaense DSM 5692] gi|257796929|gb|ACV67866.1| flagellar M-ring protein FliF [Desulfohalobium retbaense DSM 5692] Length = 504 Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 120/411 (29%), Positives = 201/411 (48%), Gaps = 29/411 (7%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 R R L L V L+ + +F Y LY + + + + L ++N+ +++ D Sbjct: 27 RRRKLSLLVVGLLCVAVFTFLILQARVADYQLLYADMTQQEASSVVDWLQDSNVSYQLRD 86 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 GSSI VP+ V K R+ LA GLP G+E+FD+ FG+T F Q++ RAL+GE Sbjct: 87 QGSSIYVPAGQVYKTRLDLAGDGLPQGQ-GVGFEIFDQ-QRFGVTQFTQQVNYQRALQGE 144 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVA 196 +AR++ +++ + +ARVH+V+P+ R+ + ASV++ S + I LV+ Sbjct: 145 LARSVATLTSVQSARVHLVLPERQFLREQQEKAKASVVVEFAPGQGLDSNQIKGIIRLVS 204 Query: 197 AAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAFL 253 +V + +VTV+DS G +L+ E E + I + L QA++ + E L Sbjct: 205 GSVEGMAANNVTVVDSQGNVLSGGEEEDSGSPISPEKLEYKQAVEGQYEQRAQALLDRVF 264 Query: 254 GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP 313 G + V A ++ ++ E +YDPDS V RS +TS+ S T + Sbjct: 265 GPNKALVRVTAAIDFVSKHTTEELYDPDSIVPRS---------EKTSESNSGTTAREE-- 313 Query: 314 HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373 ++ RS E+T E NYEI+ T ++ LS+AV+V + + L Sbjct: 314 --TEGNAGGQRSSEST----ETVNYEISRTVNEITKTMGGVKNLSVAVLVGQ----QFLQ 363 Query: 374 RSADQGKIDSYLAE-INKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 + G + + E + ++VS+A G+ RGD+I + +M E +SGT Sbjct: 364 NKGNGGAAEGHSVESLQRLVSSALGLQPDRGDSIEVVAMPVQEQAGLSSGT 414 >gi|218695543|ref|YP_002403210.1| flagellar MS-ring protein [Escherichia coli 55989] gi|218352275|emb|CAU98032.1| flagellar basal-body MS-ring and collar protein [Escherichia coli 55989] Length = 552 Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 117/418 (27%), Positives = 197/418 (47%), Gaps = 40/418 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+ V +M+ + + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIVTGSAAVAVMVALI--LWAKTPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ + S+ SE S P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNEGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEALTREAMGFSEKRGDSLNVVNSPF 429 >gi|218549263|ref|YP_002383054.1| flagellar MS-ring protein [Escherichia fergusonii ATCC 35469] gi|218356804|emb|CAQ89432.1| flagellar basal-body MS-ring and collar protein [Escherichia fergusonii ATCC 35469] gi|325497680|gb|EGC95539.1| flagellar MS-ring protein [Escherichia fergusonii ECD227] Length = 552 Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 121/419 (28%), Positives = 201/419 (47%), Gaps = 42/419 (10%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +++ + + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIVAGSAAVAVIVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEVSGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D +G LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNVH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS--------------QPESA 305 + V A+L+ +++ E Y P+ ++ S+ SE S QP A Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDQSQATLRSRQVNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 306 VTVEQNMP---------HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 + + P S PRS + + E SNYE++ T + ++R Sbjct: 321 NSAPISTPPANQNNRQQQTSTSSNSGPRSTQ----RNETSNYEVDRTIRHTKMNVGDVQR 376 Query: 357 LSIAVVVNKGRLTE--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 LS+AVVVN + L SA+Q + +I + A G + +RGD++ + + F Sbjct: 377 LSVAVVVNYKATPDGKPLPLSAEQ------MKQIEDLTREAMGFSEKRGDSLNVVNSPF 429 >gi|323940403|gb|EGB36594.1| flagellar M-ring protein FliF [Escherichia coli E482] Length = 552 Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 118/418 (28%), Positives = 197/418 (47%), Gaps = 40/418 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +M+ + + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQFNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ + S+ SE S P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429 >gi|157158866|ref|YP_001463240.1| flagellar MS-ring protein [Escherichia coli E24377A] gi|157080896|gb|ABV20604.1| flagellar M-ring protein FliF [Escherichia coli E24377A] Length = 552 Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 119/418 (28%), Positives = 197/418 (47%), Gaps = 40/418 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +M+ + + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I +I + ARVH+ MP F + P+ASV I + + AI HLV++AV Sbjct: 141 IATIGPVKGARVHLAMPKPSLFVREQKSPSASVTINLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ + S+ SE S P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429 >gi|167034925|ref|YP_001670156.1| flagellar MS-ring protein [Pseudomonas putida GB-1] gi|166861413|gb|ABY99820.1| flagellar M-ring protein FliF [Pseudomonas putida GB-1] Length = 592 Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 140/564 (24%), Positives = 248/564 (43%), Gaps = 73/564 (12%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92 + + A + P Y LY L D ++ L+ A+I + + N ++ V + + + Sbjct: 50 VAIGFAVVLWSQQPDYRPLYGSLSGMDTKQVMDTLAAADIPYNVEPNSGALLVKADDLSR 109 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 AR+ LAA G+ S N G+EL DK G + FM+ R+LEGE+ART+ S++ + AA Sbjct: 110 ARLKLAAAGVAPSDGNVGFELLDKEQGLGTSQFMEATRYRRSLEGELARTVSSLNNVKAA 169 Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVL 210 RVH+ +P F + +P+ASV++ ++ + AI +LVA +VP LD VTV+ Sbjct: 170 RVHLAIPKSSVFVRDERKPSASVLVELYPGRALEAGQVMAIVNLVATSVPELDKSQVTVV 229 Query: 211 DSTGKLLTANEMERNIL--GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM 268 D G LL+ + ++ GK + ++ + ++ L LG D +++ V A+L+ Sbjct: 230 DQKGNLLSEQIQDSSLTQAGKQFDYSRRVESMLTQRVHNILQPVLGNDRYKAEVSADLDF 289 Query: 269 DTQQIREIVYDPDSKVERSIRLSKDAQRSET-----------SQPESAVTVEQ------- 310 + ++PD RS + S D QR+ + +QP A + Q Sbjct: 290 SAVESTSEQFNPDQPALRSEQ-SVDEQRASSQGPQGVPGALSNQPPGAASAPQTTGGAAT 348 Query: 311 --------------NMPHVSDRKVPLPRSLENTDKKEEQS--NYEINTKSIATTHDNYKL 354 N + D P K +QS N+E++ T ++ Sbjct: 349 PASAIQPGQPLVDANGQQIMDPATGQPMLAPYPSDKRQQSTKNFELDRSISHTRQQQGRM 408 Query: 355 ERLSIAVVVN-KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 RLS+AVVV+ + +L G + LA ++V A G ++ RGD++T+ ++ F Sbjct: 409 TRLSVAVVVDDQVKLDPATGDATRAPWAAEDLARFTRLVQDAVGFDASRGDSVTVINVPF 468 Query: 414 LENQLFNSGTV----QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 ++ + Q F DI+ + V+ LV + G L L+NI Sbjct: 469 AADRGEEIADIAFYQQPWFWDIV-KQVLGVVFILVLVFGVLRPV---------LNNITG- 517 Query: 470 KKGEVGGKSILSPPPISSAVTTGL---MPNDNIALDSSNQDIF-SHSRNLQSRINSYVSK 525 GGK S + GL + ND ++L + S S ++++N+ Sbjct: 518 -----GGKQAASDSDMELGGMMGLDGELANDRVSLGGPTSILLPSPSEGYEAQLNA---- 568 Query: 526 QSDLRLLHMIEINEERFAKILRKW 549 + ++ + R A++++ W Sbjct: 569 -----IKGLVAEDPGRVAQVVKDW 587 >gi|170019729|ref|YP_001724683.1| flagellar MS-ring protein [Escherichia coli ATCC 8739] gi|188492347|ref|ZP_02999617.1| flagellar M-ring protein FliF [Escherichia coli 53638] gi|300951563|ref|ZP_07165396.1| flagellar M-ring protein FliF [Escherichia coli MS 116-1] gi|300956546|ref|ZP_07168828.1| flagellar M-ring protein FliF [Escherichia coli MS 175-1] gi|169754657|gb|ACA77356.1| flagellar M-ring protein FliF [Escherichia coli ATCC 8739] gi|188487546|gb|EDU62649.1| flagellar M-ring protein FliF [Escherichia coli 53638] gi|300316646|gb|EFJ66430.1| flagellar M-ring protein FliF [Escherichia coli MS 175-1] gi|300449190|gb|EFK12810.1| flagellar M-ring protein FliF [Escherichia coli MS 116-1] gi|332093105|gb|EGI98169.1| flagellar M-ring protein FliF [Shigella boydii 5216-82] Length = 552 Score = 153 bits (387), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 118/418 (28%), Positives = 197/418 (47%), Gaps = 40/418 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +M+ + + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQFNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ + S+ SE S P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429 >gi|110642044|ref|YP_669774.1| flagellar MS-ring protein [Escherichia coli 536] gi|191173305|ref|ZP_03034835.1| flagellar M-ring protein FliF [Escherichia coli F11] gi|110343636|gb|ABG69873.1| flagellar M-ring protein [Escherichia coli 536] gi|190906422|gb|EDV66031.1| flagellar M-ring protein FliF [Escherichia coli F11] Length = 552 Score = 153 bits (387), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 125/442 (28%), Positives = 207/442 (46%), Gaps = 47/442 (10%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +M+ + + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ + S+ SE S P N P + Sbjct: 261 AQVSAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPTNQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEALTREAMGFSEKRGDSLNVVNSPF-- 429 Query: 416 NQLFNSGTV-----QVSFMDIL 432 N SG Q +F+D L Sbjct: 430 NSSDESGGALPFWQQQAFIDQL 451 >gi|256017869|ref|ZP_05431734.1| flagellar MS-ring protein [Shigella sp. D9] gi|332278895|ref|ZP_08391308.1| flagellar basal-body MS-ring and collar protein [Shigella sp. D9] gi|332101247|gb|EGJ04593.1| flagellar basal-body MS-ring and collar protein [Shigella sp. D9] Length = 552 Score = 153 bits (387), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 117/418 (27%), Positives = 198/418 (47%), Gaps = 40/418 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +M+ + + +P Y L+ L D I L++ NI +R+S+ + Sbjct: 25 LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRVSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT + R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQSSTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ + S+ SE S P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429 >gi|331673452|ref|ZP_08374220.1| flagellar M-ring protein FliF [Escherichia coli TA280] gi|331069650|gb|EGI41037.1| flagellar M-ring protein FliF [Escherichia coli TA280] Length = 552 Score = 153 bits (387), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 120/422 (28%), Positives = 199/422 (47%), Gaps = 48/422 (11%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +M+ + + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ ++ S+ SE S P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPL---------------------PRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 + P+ PRS + + E SNYE++ T + ++ Sbjct: 321 N-NAPISTPPANQNNRQQQANTTSNSGPRSTQ----RNETSNYEVDRTIRHTKMNVGDVQ 375 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSM 411 RLS+AVVVN L + GK + + +I + A G + +RGD++ + + Sbjct: 376 RLSVAVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNS 427 Query: 412 DF 413 F Sbjct: 428 PF 429 >gi|323968354|gb|EGB63761.1| flagellar M-ring protein FliF [Escherichia coli M863] gi|327253070|gb|EGE64724.1| flagellar M-ring protein FliF [Escherichia coli STEC_7v] Length = 552 Score = 153 bits (387), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 116/418 (27%), Positives = 204/418 (48%), Gaps = 40/418 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +M+ + + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPAEKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ +P F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLALPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDS-KVERSIRLSK--DAQRSETSQPESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ K + ++R + ++++S + P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDKSQAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429 >gi|17988496|ref|NP_541129.1| flagellar M-ring protein FLIF [Brucella melitensis bv. 1 str. 16M] gi|256042873|ref|ZP_05445819.1| flagellar MS-ring protein [Brucella melitensis bv. 1 str. Rev.1] gi|260564110|ref|ZP_05834595.1| flagellar M-ring protein [Brucella melitensis bv. 1 str. 16M] gi|265989308|ref|ZP_06101865.1| flagellar M-ring protein [Brucella melitensis bv. 1 str. Rev.1] gi|17984287|gb|AAL53393.1| flagellar m-ring protein flif [Brucella melitensis bv. 1 str. 16M] gi|260151753|gb|EEW86846.1| flagellar M-ring protein [Brucella melitensis bv. 1 str. 16M] gi|262999977|gb|EEZ12667.1| flagellar M-ring protein [Brucella melitensis bv. 1 str. Rev.1] Length = 333 Score = 153 bits (387), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 105/315 (33%), Positives = 176/315 (55%), Gaps = 18/315 (5%) Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S ++ + Sbjct: 4 SIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNNRND 63 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 +A VEQN+P + S E TD++EE +NYE+N+ +++T D Y ++RLSIAVV+ Sbjct: 64 NATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSMTVSTVSDGYSIKRLSIAVVI 123 Query: 364 NKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 ++ RL + G + +D + +I +V+ A G+N+ RGD I +T+++FL++ + Sbjct: 124 DQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDSAGADME 183 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA-------KKGEVG 475 V + D L R + NAL L L+ + GL L R N+ A + GEV Sbjct: 184 PVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAGEVA 243 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS-RNLQSRINSYVSKQSDLRLLHM 534 +P I A + G I ++ D S +L+ R+ + LRL M Sbjct: 244 -----TPNFIGGAESVGEGVQAVIGGPAAYADQMKTSLSDLRQRMR----MPAKLRLEQM 294 Query: 535 IEINEERFAKILRKW 549 IE++EER A +L++W Sbjct: 295 IEMDEERVAAVLKQW 309 >gi|117923585|ref|YP_864202.1| flagellar M-ring protein FliF [Magnetococcus sp. MC-1] gi|117607341|gb|ABK42796.1| flagellar M-ring protein FliF [Magnetococcus sp. MC-1] Length = 551 Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 129/466 (27%), Positives = 214/466 (45%), Gaps = 28/466 (6%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 F S GR ++I A + + + A +F P LY L + RI L + Sbjct: 22 LFGSLPLTGRNGVIIAA---MASVFILAAIIWFATRPSMKVLYSGLPDLESARIVEQLGK 78 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 + + + G++I +P V R+ +A GLP S+ G+E+FD + G+T F+Q + Sbjct: 79 LGVPYELGSGGTTIRIPEDKVYDVRLEMAKAGLPKSTDGVGFEIFDNQSLMGMTDFVQRM 138 Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE 189 RAL+GE+AR+++SI+ + ARVH+V+P F TASV++ + + Sbjct: 139 NYQRALQGELARSVESIAAVEKARVHLVLPKKSMFAAEERTATASVVMELTHALNKTQID 198 Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME----RNILGKSLSIVQAIQHEIEMNI 245 I H+VA+AV L VT+LD G L+ + E R +L++ + +IE + Sbjct: 199 GITHMVASAVEGLSQDQVTLLDQKGNLIAGGKTEDLDGRMPTDDALALQSMKEKKIEERV 258 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS--ETSQPE 303 L LG D + AEL++D +Q +E YDPD +V S ++ R T Sbjct: 259 QSLLDRVLGPDKSIIRITAELDLDKKQRQEESYDPDGQVPLSTNTVTESSRGMFGTGGVP 318 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 + + N V+ S + D + EQ N+ + K + RLS+AV++ Sbjct: 319 GVIPNDPNQTAVAGGT----GSQQTRDVEREQVNFLVPKKVTTVQEAVGDIRRLSVAVMI 374 Query: 364 NKGRLTEVLGRSA--DQGKIDSY-------LAEINKIVSAATGINSRRGDTITITSMDF- 413 + G V + D K Y + ++ +I+ G +++RGD+I +T+ F Sbjct: 375 D-GTYEAVKDKDGNIDPEKPAVYTPRSTEEMEQLKRIIMQTVGFDAKRGDSIEVTNTAFE 433 Query: 414 -LENQL-FNSGTVQVSFMDILSRHFATVINA--LVFLVGTLLVTFL 455 L L S + F ++++ A + A LVF V LVT L Sbjct: 434 PLPPPLDVKSPWLSREFQLEMAKYGAIALLAFLLVFFVMRPLVTKL 479 >gi|896313|gb|AAB06801.1| flagellar MS ring [Pseudomonas aeruginosa] Length = 599 Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 120/463 (25%), Positives = 217/463 (46%), Gaps = 50/463 (10%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92 + + A + P Y LY L D NR+ AL+ A+I +++ N ++ V + +G+ Sbjct: 52 VAIGFAVVLWSQQPDYKPLYGSLNGVDANRVVEALTAADIPYKVEPNSGALLVKADDLGR 111 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 AR+ +A+ G+ + +N G+E+ DK + G + FM+ R LEGE+ART+ S++ + AA Sbjct: 112 ARMKVASAGVAPTDNNVGFEILDKEQALGTSQFMEATNYRRGLEGELARTVSSLNNVKAA 171 Query: 153 RVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDV 207 RVH+ +P F + +P+ASV++ R++ PS AI +LVA +VP LD V Sbjct: 172 RVHLAIPKSSVFVRDDRKPSASVLVELYPGRSLEPS---QVMAIVNLVATSVPELDKSQV 228 Query: 208 TVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE 265 TV+D G LL+ + E + K + ++ + ++ L L ++ V A+ Sbjct: 229 TVVDQKGNLLSDQQELSELTMADKQFDFTRRMEGLLTQRVHNILQPVLDNGRNKTEVSAD 288 Query: 266 LNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPH----------- 314 ++ + +Y+PD RS + + + +R +S P+ N P Sbjct: 289 VDFSAVESTSEMYNPDQPALRSEQHNNE-ERQNSSGPQGVPGALSNQPPGPASAPQQATA 347 Query: 315 --------------------VSDRKVPLPR-SLENTDKKEEQS-NYEINTKSIATTHDNY 352 + D K P + TDK+++ + NYE++ T Sbjct: 348 SAPADYVAPGQPLKDANGQTIIDPKTGKPELAPYPTDKRDQTTRNYELDRSISYTKQQQG 407 Query: 353 KLERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 +L RLS+AVV+ ++ ++ G + Q LA ++V + G ++ RGD++++ + Sbjct: 408 RLRRLSVAVVLDDQMKVDAKTGEVSHQPWSADELARFTRLVQDSVGYDASRGDSVSVINA 467 Query: 412 DFLENQLFNSGTV----QVSFMDILSRHFATVINALVFLVGTL 450 F Q ++ Q F DI+ + V+ LV + G L Sbjct: 468 PFAPAQAEEIDSIPFYSQPWFWDIV-KQVLGVLFILVLMFGVL 509 >gi|310816845|ref|YP_003964809.1| flagellar M-ring protein FliF, putative [Ketogulonicigenium vulgare Y25] gi|308755580|gb|ADO43509.1| flagellar M-ring protein FliF, putative [Ketogulonicigenium vulgare Y25] Length = 500 Score = 153 bits (386), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 138/459 (30%), Positives = 226/459 (49%), Gaps = 29/459 (6%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 Q L SG SL R RI+++A+ + + + + AR V P LY L+ + + Sbjct: 2 QNLLALWSGFSL-RRRIILVAATLGIFLAVIGLARG-VGRPDMALLYAGLDPAASAEVVA 59 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 A+ + + F + G +I VP++ R+ LA GLP+ + GYEL D ++ FG T+ Sbjct: 60 AVEQQRLPFEV--RGDAIYVPAASRDLLRMTLAGAGLPAPGAQ-GYELLDNLSGFGTTAQ 116 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV- 184 M + RA EGE+ARTI ++ G+ AARVHI P F++ G TA+V + + S Sbjct: 117 MFDAAYWRAKEGELARTILAVPGLQAARVHISPPAARVFQQ-GEPATAAVTVTMASGSAS 175 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN 244 + A+A R L+AAAVP LD G+V V+D+ L+ A + + + Q E+ Sbjct: 176 QQQAQAFRSLIAAAVPGLDPGNVAVIDAKAGLIAAPD--------NAQLADTRQDELRNR 227 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 + L A +G N + E DT+ I E DP+ +V S +S+ A+RS+ + + Sbjct: 228 VRSLLEARVGAGNAVVELAVETVTDTESIFERRLDPEGRVVVSNDVSETARRSQGNA-DG 286 Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 +VTV N+P + + S + +NYE++ S + RL++AV+VN Sbjct: 287 SVTVASNLPDGAANQE-AGSSSSEDRESRNVTNYELSETSREVLRAPGAVRRLTVAVLVN 345 Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424 + E R+ D+ L + ++V++A G ++ RGD IT+ +M F+ + + V Sbjct: 346 EPTGPEAAPRAPDE------LEALRELVASAVGFDAARGDVITLRAMPFVAPPVLGTEAV 399 Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 +R F + + F L+ LGL LR L Sbjct: 400 AAP-----ARLF-DPMQLVQFGALALVALILGLFVLRPL 432 >gi|118581826|ref|YP_903076.1| flagellar M-ring protein FliF [Pelobacter propionicus DSM 2379] gi|118504536|gb|ABL01019.1| flagellar M-ring protein FliF [Pelobacter propionicus DSM 2379] Length = 528 Score = 153 bits (386), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 127/429 (29%), Positives = 213/429 (49%), Gaps = 35/429 (8%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L +L++ F +L + +++A V ++ + F F N Y L+ L D I Sbjct: 5 LQRLIEPF---MALSPGKRMLIAGVAILSVAAFAVLIFVANRVDYRPLFTNLSTEDAAEI 61 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L + ++I+ +G I VP+ +V + R+ LA++GLP G+E+FD+ N FG+T Sbjct: 62 VKKLKDNKTPYQITADGKGIMVPADLVYEQRLALASEGLPQGG-GVGFEIFDRKN-FGMT 119 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 F+Q+I RAL+GE++RTI ++G+ AR+H+V+P+ F++ TAS++++ + Sbjct: 120 EFVQKINYQRALQGELSRTISQLNGVEQARIHLVIPEKSLFKENEKPSTASIVLKMKSGR 179 Query: 184 VYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEI 241 + E I HLVA+++ ++ VTVLDS GK+L + + K+ S++Q Q Sbjct: 180 SLRQNEVQGIVHLVASSIEGMEADQVTVLDSRGKVLNKGGGDPDPTSKATSVMQETQRIY 239 Query: 242 EMNINKALAAFLG--VDNFRSAVVAELNMDTQQIR--EIVYDPDSKVERSIRLSKDAQRS 297 E N+ + + + L V + R+ D +Q+ E +DP+S RS QRS Sbjct: 240 EKNVEERIQSMLDPVVGSGRAIARVSALFDFKQVERLEEKFDPESIAVRS------EQRS 293 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPR-------SLENTDKKEEQSNYEINTKSIATTHD 350 E + A V N V + L R K +E NYE++ + Sbjct: 294 EE---KGATAV--NAAGVPGVQTNLGRTGAGGATQAGGAAKNDETLNYEVSRTTAKIIEP 348 Query: 351 NYKLERLSIAVVVN-KGRLTEVL--GRSADQGKIDSYLAEINKI---VSAATGINSRRGD 404 L RLS+AV+V+ K L + G++A I E+ KI V +A G N+ RGD Sbjct: 349 VGALSRLSVAVLVDGKYALPTAVKDGQTATPKYIPRSPEELQKIEALVKSAVGFNAERGD 408 Query: 405 TITITSMDF 413 + I ++ F Sbjct: 409 QLAIQNIPF 417 >gi|209919360|ref|YP_002293444.1| flagellar MS-ring protein [Escherichia coli SE11] gi|293446318|ref|ZP_06662740.1| flagellar M-ring protein FliF [Escherichia coli B088] gi|209912619|dbj|BAG77693.1| flagellar hook-basal body MS ring protein FliF [Escherichia coli SE11] gi|291323148|gb|EFE62576.1| flagellar M-ring protein FliF [Escherichia coli B088] Length = 552 Score = 153 bits (386), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 118/418 (28%), Positives = 197/418 (47%), Gaps = 40/418 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +M+ + + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPAEKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I +I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IATIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ + S+ SE S P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429 >gi|27355280|dbj|BAC52264.1| fliF [Bradyrhizobium japonicum USDA 110] Length = 519 Score = 153 bits (386), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 115/394 (29%), Positives = 199/394 (50%), Gaps = 13/394 (3%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 +I + LV F+ R V +P L+ L V D + I L I F + + G+ Sbjct: 1 MIAVTAALVGFFAFVIMR--VTTPQMTTLFTDLSVEDSSSIIKDLERQAIQFELRNEGTI 58 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP V + R+ LA +G GYE+FDK ++ G TSF+Q I +RALEGE+ART Sbjct: 59 IMVPKDKVTRLRMKLA-EGGLPKGGGVGYEVFDKSDALGTTSFVQNINHLRALEGELART 117 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNL 202 I++I I AARVH+V+P+ F + P+AS+++R + AIRHLVA+AV L Sbjct: 118 IRAIDRIQAARVHLVLPERPLFSREAPEPSASIVVRVRGALEAQQIRAIRHLVASAVNGL 177 Query: 203 DMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 V+++D G+LL A + E+ + + + + + + +++ +G R Sbjct: 178 KPQRVSIVDEAGQLLADGAATDPEQALGDERRT---TFEKRMRKQVEDIVSSVVGSGRAR 234 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRK 319 + A+ + + +DP+ +V RS + +++ S T+ VTV +P +++ Sbjct: 235 VQLSADFDFNKITQTSDKFDPEGRVLRSTQTREES--SMTADNNGQVTVNNELP--GNQQ 290 Query: 320 VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQG 379 + + + K EE +NYEI+ + + ++ R+S+AV+V+ G A Q Sbjct: 291 NNGVAAKDQSKKTEETNNYEISRTTKTEVTEAGRVNRISVAVLVDGIYSKNDKGELAYQD 350 Query: 380 KIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 + L I +V +A G + +RGD + + ++ F Sbjct: 351 RTKEQLDRIATLVRSAIGFDQKRGDQVEVVNLRF 384 >gi|238798572|ref|ZP_04642049.1| Flagellar M-ring protein [Yersinia mollaretii ATCC 43969] gi|238717592|gb|EEQ09431.1| Flagellar M-ring protein [Yersinia mollaretii ATCC 43969] Length = 572 Score = 153 bits (386), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 140/549 (25%), Positives = 253/549 (46%), Gaps = 67/549 (12%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + SP Y LY L D I L++ NI +R +DNG ++ +P+ V + R+ LA Q Sbjct: 46 LWAKSPDYRVLYSNLSDRDGGEIVTQLTQLNIPYRFADNGGALLIPAEKVHETRLRLAQQ 105 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI ++ ++ RVH+ MP Sbjct: 106 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIGTLGPVLNVRVHLAMPK 163 Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + PTASV + A+ P AI ++V+++V L G+VTV+D TG+LL Sbjct: 164 PSLFVREQKSPTASVTL-ALQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLL 222 Query: 218 T-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 T ++ R++ L +++ + I LA +G N + V A+++ +++ + Sbjct: 223 TQSDSAGRDLNAAQLKFTNEVENRFQRRIETILAPMVGNGNVHAQVTAQVDFASREQTDE 282 Query: 277 VYDPDSKVERSIRLSKDAQRSE------TSQPESAVTVEQNMPHVSDRKVPLP------- 323 Y P+ + S+ SE A++ + + V+ +VP P Sbjct: 283 EYKPNQAANQGAVRSQQTSNSEQLGGSNVGGVPGALSNQPSATPVAPIEVPQPAPAAGAA 342 Query: 324 ---------------------RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 + + + ++ +N+E++ T ++RLS+AVV Sbjct: 343 GATANNANAANRPAATTAARSTATSSNSRHDQTTNFEVDRTIRHTQQQAGIVQRLSVAVV 402 Query: 363 VNKG--RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 VN G + + + S DQ LA++ + A G ++ RGDT+ + + F N + Sbjct: 403 VNYGSDKAGKPVALSKDQ------LAQVESLTREAMGFSTDRGDTLNVVNTPF--NATDD 454 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 + F S F ++NA +L+ LLV ++ L R K ++ K+ Sbjct: 455 GSGSSLPFWQQQS-FFDQLLNAGRYLL-ILLVAWILWRKLVRPM----ITKKQIADKAAA 508 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 S ++S V T + S +++ +N Q R+++ V Q R+ + + + Sbjct: 509 S---VNSMVQTAQTAE---TVKQSKEELALRKKN-QQRVSAEVQAQ---RIRELADKDPR 558 Query: 541 RFAKILRKW 549 A ++R+W Sbjct: 559 IVALVIRQW 567 >gi|157145268|ref|YP_001452587.1| flagellar MS-ring protein [Citrobacter koseri ATCC BAA-895] gi|157082473|gb|ABV12151.1| hypothetical protein CKO_01005 [Citrobacter koseri ATCC BAA-895] Length = 558 Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 122/426 (28%), Positives = 203/426 (47%), Gaps = 54/426 (12%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V I++ M + +P Y L+ L D I L++ NI +R ++ + Sbjct: 28 LIVAGSAAVAIIVAMV--LWAKAPDYRTLFSNLSDQDGGAIVTQLTQMNIPYRFTEGSGA 85 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE+ART Sbjct: 86 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELART 143 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAA 197 I+++ + ARVH+ MP F + P+ASV + RA++ A+ HLV++ Sbjct: 144 IETLGPVKRARVHLAMPKPSLFVREQKSPSASVTVNLEPGRALDEG---QISAVVHLVSS 200 Query: 198 AVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVD 256 AV L G+VT++D G LLT +N R++ L ++ I+ I L+ +G Sbjct: 201 AVAGLPPGNVTLVDQGGHLLTQSNTSSRDLNDAQLKYASDVEGRIQRRIESILSPIVGNG 260 Query: 257 NFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE--------------TSQP 302 N + V A+L+ ++ E Y P+ +++ S+ SE ++QP Sbjct: 261 NVHAQVTAQLDFANKEQTEEQYRPNGDASQAVLRSRQLNESEQIGSGYPGGVPGALSNQP 320 Query: 303 ESAVTVEQNMPHVSDRKVP-----------LPRSLENTDKKEEQSNYEINTKSIATTHDN 351 A + P + + +PR NT ++ E SNYE++ T + Sbjct: 321 APANAAPISTPPANQQNAQNTQTTNNTNSNVPR---NT-QRNETSNYEVDRTIRHTKLNV 376 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGK----IDSYLAEINKIVSAATGINSRRGDTIT 407 ++RLS+AVVVN R+ GK + +I + A G + +RGDT+ Sbjct: 377 GDVQRLSVAVVVNY--------RALPDGKPLPLTTEQMKQIEDLTREAMGFSDKRGDTLN 428 Query: 408 ITSMDF 413 + + F Sbjct: 429 VVNSPF 434 >gi|331647532|ref|ZP_08348624.1| flagellar M-ring protein FliF [Escherichia coli M605] gi|330911744|gb|EGH40254.1| flagellar M-ring protein FliF [Escherichia coli AA86] gi|331043256|gb|EGI15394.1| flagellar M-ring protein FliF [Escherichia coli M605] Length = 552 Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 118/418 (28%), Positives = 198/418 (47%), Gaps = 40/418 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +M+ + + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIVAGSAAVAVMVALI--LWAKAPDYRILFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ + S+ SE S P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEALTREAMGFSEKRGDSLNVVNSPF 429 >gi|193066388|ref|ZP_03047436.1| flagellar M-ring protein FliF [Escherichia coli E22] gi|194429948|ref|ZP_03062458.1| flagellar M-ring protein FliF [Escherichia coli B171] gi|301327725|ref|ZP_07220930.1| flagellar M-ring protein FliF [Escherichia coli MS 78-1] gi|192925973|gb|EDV80619.1| flagellar M-ring protein FliF [Escherichia coli E22] gi|194412037|gb|EDX28349.1| flagellar M-ring protein FliF [Escherichia coli B171] gi|300845725|gb|EFK73485.1| flagellar M-ring protein FliF [Escherichia coli MS 78-1] gi|320198628|gb|EFW73228.1| Flagellar M-ring protein FliF [Escherichia coli EC4100B] gi|323158583|gb|EFZ44597.1| flagellar M-ring protein FliF [Escherichia coli E128010] gi|323183922|gb|EFZ69309.1| flagellar M-ring protein FliF [Escherichia coli 1357] Length = 552 Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 118/418 (28%), Positives = 197/418 (47%), Gaps = 40/418 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +M+ + + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I +I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IATIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ + S+ SE S P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429 >gi|319790420|ref|YP_004152053.1| flagellar M-ring protein FliF [Thermovibrio ammonificans HB-1] gi|317114922|gb|ADU97412.1| flagellar M-ring protein FliF [Thermovibrio ammonificans HB-1] Length = 532 Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 126/437 (28%), Positives = 222/437 (50%), Gaps = 41/437 (9%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 D+L F + + R +L+L ++ LV + + R + N Y LY L D I Sbjct: 8 DKLTAFLREKAN-PRNIVLVLGALTLVVFLSLVLVRSYSNQ-EYAVLYTHLSPDDAGEIL 65 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L + I +++ +GS I VP V + R+ LAA+GLP G+E+FDK G+T Sbjct: 66 TVLQQEKIPYKVEGDGSIILVPKDKVYEVRLQLAAKGLPHGKV-VGFEIFDK-PKLGITQ 123 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RA 179 F Q + +RALEGE+ RTI+ + + +A+V+I +P F + P ASV++ R Sbjct: 124 FQQNVEYLRALEGELERTIEQLDAVRSAKVNIALPKDSIFVRPEQEPKASVLVDLWPGRD 183 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQ 235 + P K AI LV+ AVP L +VTV+D+ G++L+ ++ + K L I + Sbjct: 184 LTPEQVK---AIIFLVSHAVPGLKPENVTVVDTRGRVLSDLVESDNSTYAVSSKELKIKR 240 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI--REIVYDPDSKVERSIRLSKD 293 ++ +IE + L+ LG + V A + ++T ++ ++ +YDPD S R ++ Sbjct: 241 QLERDIERKVESMLSQVLG--GGKVVVRASVEVETGKVETQKEIYDPDMTAVVSQRKVQE 298 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 + + QP+ A N+P V + P + ++ +KK+ +NY+++ + ++ Sbjct: 299 KEVATQKQPQGAPGTTTNVPPVVNFG-PNAKVVQK-EKKDVTTNYDVSKTIERSVTPVFR 356 Query: 354 LERLSIAVVVNKGRLTEVLG-----------RSADQGKIDSYLAEINKIVSAATGINSRR 402 ++R+++ V+V+ GR +V G RS + I +Y +IV + G + +R Sbjct: 357 IKRITVGVLVD-GRYEKVKGPKGTVEYKFVPRSPQE--IKTY----EEIVKSVIGYDPKR 409 Query: 403 GDTITITSMDFLENQLF 419 GD +T+ S+ F E QL Sbjct: 410 GDRVTVASVPF-ETQLL 425 >gi|260844337|ref|YP_003222115.1| flagellar basal-body MS-ring and collar protein FliF [Escherichia coli O103:H2 str. 12009] gi|257759484|dbj|BAI30981.1| flagellar basal-body MS-ring and collar protein FliF [Escherichia coli O103:H2 str. 12009] Length = 552 Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 118/418 (28%), Positives = 197/418 (47%), Gaps = 40/418 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +M+ + + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I +I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IATIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ + S+ SE S P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMMQIEDLTREAMGFSEKRGDSLNVVNSPF 429 >gi|322421735|ref|YP_004200958.1| flagellar M-ring protein FliF [Geobacter sp. M18] gi|320128122|gb|ADW15682.1| flagellar M-ring protein FliF [Geobacter sp. M18] Length = 524 Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 117/391 (29%), Positives = 188/391 (48%), Gaps = 33/391 (8%) Query: 44 NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP 103 N Y L+ L D I L E + ++I+ +G +I VPS V R+ +A+ GLP Sbjct: 42 NKTDYRPLFANLTSEDAGEIVKKLKEQKVPYQIAADGKAIMVPSDKVYDLRLSMASDGLP 101 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 GYE+FD+ N FG+T F+Q++ RAL+GE++RTI I+G+ +ARVH+ +P+ Sbjct: 102 QGG-GIGYEIFDRKN-FGMTEFVQKLNYQRALQGELSRTISQIAGVESARVHLAIPEKTL 159 Query: 164 FRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN- 220 F+ TASV+++ + + + AE I HLVA+++ +D VTVLDS GK+L+ N Sbjct: 160 FKDAEKPATASVVLKMKSNRMLREAEVQGIVHLVASSIEGMDPEQVTVLDSRGKMLSGNT 219 Query: 221 --EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 + + G + + E + L +G + V A + + E Y Sbjct: 220 PSDTASKLTGSRQETQRNFEKTQEEKLQTLLDRVVGSGKCVARVSAAFDFKQVEKYEERY 279 Query: 279 DPDSKVERSIRLSKDAQRSE-----TSQPESAVTVEQNMPHVSDRKVP-LPRSLENTDKK 332 DP+S RS QRSE T+ V+ N+ R P P K Sbjct: 280 DPESAAVRS------EQRSEEKGGVTATASGVPGVQSNL----GRSAPGAPGQTGGGSKT 329 Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY-------L 385 +E NYE++ + L ++S+AV+V+ G+ L A G Y + Sbjct: 330 DETLNYEVSRSTARIIEPVGALSKVSVAVLVD-GKYD--LPAGAKPGATPKYQPRTPDEM 386 Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLEN 416 +I +V +A G ++ RGD +T+ ++ F E Sbjct: 387 QKIEALVKSAVGFSAERGDQVTVANIPFQET 417 >gi|195952552|ref|YP_002120842.1| flagellar M-ring protein FliF [Hydrogenobaculum sp. Y04AAS1] gi|195932164|gb|ACG56864.1| flagellar M-ring protein FliF [Hydrogenobaculum sp. Y04AAS1] Length = 500 Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 121/417 (29%), Positives = 212/417 (50%), Gaps = 31/417 (7%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 IL+ L + F++ L +T+ +I+ S+ +V +L F + HY LY L D+ Sbjct: 6 ILNNLKERFQA---LNKTQQIIVLSIPVVLALLTGLIFFLTSRVHYAVLYGDLNNRDMAA 62 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I+ L + N+ ++I+ +G +I VP + R+ LAA GLP+ G++L +K+ G+ Sbjct: 63 IAEQLEKDNVKYKITQDGRTILVPKQEARQLRLKLAAMGLPTKGY-PGFKLLNKM-PLGM 120 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T FMQ + RALE E++ TI I A+V++ +P F +P+ASV I + P Sbjct: 121 TDFMQHVEYQRALEEELSNTILGFRNIEKAKVNLAIPKPSIFITQSQKPSASVFIE-LKP 179 Query: 183 S---VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAI 237 + AIR+LVAA+VP+L VTV+DS G LT N + + L + + Sbjct: 180 GASITRRQVIAIRNLVAASVPDLTPNRVTVVDSNGVDLTEELNNPSSYLTNEQLRVKTDL 239 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 ++ I ++ + L LG +N R AV E + + + Y+P++ +I + Q + Sbjct: 240 ENSITKHLEQVLGQALGYNNVRVAVDVEPDFSQVETKSKNYNPNTT---AIVSQQKKQET 296 Query: 298 ETSQPESAVT-VEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 T S V N+P +S + P + + KKE +NY+++ + +++R Sbjct: 297 TTGTSVSGVPGTASNIPPMSGLR---PNANFQSTKKEVTTNYDVSVEKTHVVDKTIRIKR 353 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 +S+ V+VN AD ++ L I ++V AA G++ +RGDT+++ ++ F Sbjct: 354 MSVGVIVN-----------ADLKNVN--LNSIRQLVIAAAGVDPKRGDTVSVIAVPF 397 >gi|300904828|ref|ZP_07122654.1| flagellar M-ring protein FliF [Escherichia coli MS 84-1] gi|301305281|ref|ZP_07211378.1| flagellar M-ring protein FliF [Escherichia coli MS 124-1] gi|300403255|gb|EFJ86793.1| flagellar M-ring protein FliF [Escherichia coli MS 84-1] gi|300839487|gb|EFK67247.1| flagellar M-ring protein FliF [Escherichia coli MS 124-1] gi|315257230|gb|EFU37198.1| flagellar M-ring protein FliF [Escherichia coli MS 85-1] Length = 552 Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 117/418 (27%), Positives = 197/418 (47%), Gaps = 40/418 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+ V +M+ + + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIVTGSAAVAVMVALI--LWAKTPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ + S+ SE S P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEALTREAMGFSEKRGDSLNVVNSPF 429 >gi|260598447|ref|YP_003211018.1| flagellar MS-ring protein [Cronobacter turicensis z3032] gi|260217624|emb|CBA31913.1| Flagellar M-ring protein [Cronobacter turicensis z3032] Length = 571 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 119/413 (28%), Positives = 196/413 (47%), Gaps = 50/413 (12%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + P Y LY L D I L++ NI + +DNG+SI VP+ V R+ LA QG Sbjct: 46 WAKQPEYRVLYSNLSDQDGGAIVTQLTQMNIPYNFADNGASIMVPAEKVYDLRLRLAQQG 105 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 106 LPKGGA-VGFELMDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPKP 163 Query: 162 GSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + ++ P A+ H+V++AV L G+VT++D G+LLT Sbjct: 164 SLFVREQKSPSASVTL-SLQPGRTLDDGQVAAVVHMVSSAVAGLPPGNVTLVDQAGRLLT 222 Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 + R++ L ++ I+ I LA +G N + V A+++ ++ E Sbjct: 223 QSGTGARDLNDAQLKYASDVEGRIQRRIESILAPIVGSGNVHAQVTAQIDFSNKEQTEEQ 282 Query: 278 Y----DPDSKVERSIRLSKDAQRSE----------TSQPESAVTVE-------------- 309 Y DP RS +L+ + Q ++QP A + Sbjct: 283 YRPNSDPSQMAVRSRQLNTNDQVGAGNPGGVPGALSNQPAPANSAPIDAPAGQNANGQNA 342 Query: 310 -------QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 QN S ++ +++E +NYE++ T + ++RLS+AVV Sbjct: 343 NGQNANGQNAQRTQSTSTTGASSGPHSSQRDETTNYEVDRTIRHTKMNVGDVQRLSVAVV 402 Query: 363 VNKGRL--TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 VN +L + L +ADQ L +I + A G + +RGDT+ + + F Sbjct: 403 VNYRQLGNGKPLALTADQ------LKQIEDLTREAMGYSDKRGDTLNVVNSPF 449 >gi|256112170|ref|ZP_05453091.1| flagellar MS-ring protein [Brucella melitensis bv. 3 str. Ether] gi|256261971|ref|ZP_05464503.1| flagellar M-ring protein FliF [Brucella melitensis bv. 2 str. 63/9] gi|265993596|ref|ZP_06106153.1| flagellar M-ring protein FliF [Brucella melitensis bv. 3 str. Ether] gi|262764466|gb|EEZ10498.1| flagellar M-ring protein FliF [Brucella melitensis bv. 3 str. Ether] gi|263091455|gb|EEZ15991.1| flagellar M-ring protein FliF [Brucella melitensis bv. 2 str. 63/9] gi|326411310|gb|ADZ68374.1| flagellar MS-ring protein [Brucella melitensis M28] gi|326554599|gb|ADZ89238.1| flagellar MS-ring protein [Brucella melitensis M5-90] Length = 333 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 105/315 (33%), Positives = 175/315 (55%), Gaps = 18/315 (5%) Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S ++ + Sbjct: 4 SIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNNRND 63 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 +A VEQN+P + S E TD++EE +NYE+N+ +++T D Y ++RLSIAVV+ Sbjct: 64 NATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSMTVSTVSDGYSIKRLSIAVVI 123 Query: 364 NKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 ++ RL + G + +D + +I +V+ A G+N+ RGD I +T+++FL+ + Sbjct: 124 DQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGADME 183 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA-------KKGEVG 475 V + D L R + NAL L L+ + GL L R N+ A + GEV Sbjct: 184 PVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAGEVA 243 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS-RNLQSRINSYVSKQSDLRLLHM 534 +P I A + G I ++ D S +L+ R+ + LRL M Sbjct: 244 -----TPNFIGGAESVGEGVQAVIGGPAAYADQMKTSLSDLRQRMR----MPAKLRLEQM 294 Query: 535 IEINEERFAKILRKW 549 IE++EER A +L++W Sbjct: 295 IEMDEERVAAVLKQW 309 >gi|194439576|ref|ZP_03071649.1| flagellar M-ring protein FliF [Escherichia coli 101-1] gi|194421485|gb|EDX37499.1| flagellar M-ring protein FliF [Escherichia coli 101-1] gi|323972762|gb|EGB67962.1| flagellar M-ring protein FliF [Escherichia coli TA007] Length = 552 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 117/418 (27%), Positives = 197/418 (47%), Gaps = 40/418 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+ V +M+ + + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIVTGSAAVAVMVALI--LWAKTPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ + S+ SE S P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429 >gi|331657984|ref|ZP_08358946.1| flagellar M-ring protein FliF [Escherichia coli TA206] gi|331056232|gb|EGI28241.1| flagellar M-ring protein FliF [Escherichia coli TA206] Length = 552 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 117/418 (27%), Positives = 197/418 (47%), Gaps = 40/418 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+ V +M+ + + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIVTGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ + S+ SE S P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEALTREAMGFSEKRGDSLNVVNSPF 429 >gi|315296472|gb|EFU55769.1| flagellar M-ring protein FliF [Escherichia coli MS 16-3] Length = 552 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 117/418 (27%), Positives = 197/418 (47%), Gaps = 40/418 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +M+ + + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ L QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLTQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRTLDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ + S+ SE S P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEALTREAMGFSEKRGDSLNVVNSPF 429 >gi|324013493|gb|EGB82712.1| flagellar M-ring protein FliF [Escherichia coli MS 60-1] Length = 552 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 124/442 (28%), Positives = 207/442 (46%), Gaps = 47/442 (10%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +M+ + + +P Y L+ + D I L++ NI +R S+ + Sbjct: 25 LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNISDQDGGAIVSQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ + S+ SE S P N P + Sbjct: 261 AQVSAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPTNQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEALTREAMGFSEKRGDSLNVVNSPF-- 429 Query: 416 NQLFNSGTV-----QVSFMDIL 432 N SG Q +F+D L Sbjct: 430 NSSDESGGALPFWQQQAFIDQL 451 >gi|332343664|gb|AEE56998.1| flagellar M-ring protein FliF [Escherichia coli UMNK88] Length = 552 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 117/418 (27%), Positives = 197/418 (47%), Gaps = 40/418 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+ V +M+ + + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIVTGSAAVAVMVALI--LWAKTPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ + S+ SE S P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429 >gi|307138605|ref|ZP_07497961.1| flagellar MS-ring protein [Escherichia coli H736] gi|331642559|ref|ZP_08343694.1| flagellar M-ring protein FliF [Escherichia coli H736] gi|331039357|gb|EGI11577.1| flagellar M-ring protein FliF [Escherichia coli H736] Length = 552 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 117/418 (27%), Positives = 197/418 (47%), Gaps = 40/418 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+ V +M+ + + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIVTGSAAVAVMVALI--LWAKTPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ + S+ SE S P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEALAREAMGFSEKRGDSLNVVNSPF 429 >gi|88813200|ref|ZP_01128440.1| flagellar M-ring protein [Nitrococcus mobilis Nb-231] gi|88789522|gb|EAR20649.1| flagellar M-ring protein [Nitrococcus mobilis Nb-231] Length = 580 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 120/402 (29%), Positives = 194/402 (48%), Gaps = 34/402 (8%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y LY L D + ++ AL ANI R+ N +I VP+ + +AR+ LA Q Sbjct: 62 MWAQEPTYRALYANLPTQDASAVADALQTANIPHRLDTNSGAILVPAQRLSEARLKLAGQ 121 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+E + FG + FM+ RALE E+ARTI ++ + +RVH+ +P+ Sbjct: 122 GLP-HTGGVGFESLRQEQGFGTSQFMETARFQRALETELARTIDALDPVARSRVHLAIPE 180 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+A+V I V S + AI HLVA+AVP + VT++D G+LL+ Sbjct: 181 RSVFVRDRKTPSAAVSIGLYPGRVLSSGQVLAIAHLVASAVPAMTASAVTIVDQRGRLLS 240 Query: 219 --ANEMERNILGKSLSIVQ-AIQHEIE----MNINKALAAFLGVDNFRSAVVAELNMDTQ 271 ANE E G + ++ Q A +H +E I L +G + ++ V A ++ Q Sbjct: 241 RVANEGE----GLNATVQQLAFRHRVEEAYARRIEDLLTPIVGAGHVKAQVNARVDFSAQ 296 Query: 272 QIREIVYDPDSKVERSIRLSKD-AQRSE---------TSQPESAVTVEQNMPHVSDRKVP 321 + E +Y P+ V RS + K+ +RS+ ++QP T++ P S + V Sbjct: 297 ERTEELYQPEQSVVRSEQSMKERTERSQKAIGVPGALSNQPPGTGTLQPAQPGKSGKPVD 356 Query: 322 LPRSLENTDKKE-------EQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL---TEV 371 + T E NYEI+ + RLS+AV++++ + T+ Sbjct: 357 QQEAANQTSAPELVDSRISHTRNYEISKTIHHVRTPRGAITRLSVAVLLDRPAIAAKTKD 416 Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 ++ Q LAE+ ++V G ++ RGDTI + S F Sbjct: 417 KTQAPPQVDPQVELAELTELVKQVVGFDADRGDTINLISSPF 458 >gi|256022404|ref|ZP_05436269.1| flagellar MS-ring protein [Escherichia sp. 4_1_40B] gi|301029395|ref|ZP_07192489.1| flagellar M-ring protein FliF [Escherichia coli MS 196-1] gi|299877699|gb|EFI85910.1| flagellar M-ring protein FliF [Escherichia coli MS 196-1] Length = 552 Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 117/418 (27%), Positives = 197/418 (47%), Gaps = 40/418 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+ V +M+ + + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIVTGSAAVAVMVALI--LWAKTPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ + S+ SE S P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEALTREAMGFSEKRGDSLNVVNSPF 429 >gi|224373126|ref|YP_002607498.1| flagellar MS-ring protein [Nautilia profundicola AmH] gi|223589285|gb|ACM93021.1| flagellar M-ring protein FliF [Nautilia profundicola AmH] Length = 561 Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 137/440 (31%), Positives = 225/440 (51%), Gaps = 35/440 (7%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVI-LVPIMLFMAARFFVNSPH----YDNLYVKLEV 57 + Q++ F K+ R +I+I+++++ LV I+ F+ F S Y L+ L Sbjct: 6 LFKQIIAFTKNLNK--RQKIVIISAIVALVAIISFLVV-FNTTSSKTKTGYAILFDNLSS 62 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 D I L + I + I ++G I VP +V K R+ +AAQGLP SS G+ELFDK Sbjct: 63 KDAALIVQYLDKKQIPYVIPEDGV-IEVPKDVVQKIRLDVAAQGLPKSSK-VGFELFDK- 119 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 NSFG+T F Q++ +RALEGE+ RTI+S+ + +A V+I +P F + PTASV+I Sbjct: 120 NSFGITDFEQKVKYLRALEGELGRTIESLDAVESATVNIAIPKDSVFVEKQTPPTASVVI 179 Query: 178 RAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERN--ILGKSL 231 + + P++ K + I++LVAAAVP + +V ++D G LL N E+ +N +L + Sbjct: 180 K-LKPNMVLTPKQIQGIKYLVAAAVPKMKPENVKIIDQYGNLLGENDELTQNNELLKAEI 238 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ----QIREIVYDPDSKVERS 287 + ++ +E I LA +G N VVA++N+D + + +Y PD+ Sbjct: 239 IYKKRMEKALEDKIVSILAPVIGGKN---KVVAKVNLDIDFSQVKSKSTIYSPDN----V 291 Query: 288 IRLSKDAQRSETS-QPESAVTVEQNMPHVSDRKVPLPRSLENTD---KKEEQSNYEINTK 343 +R + + S T +P+ V + +V V +S E D K + +NYEI+T Sbjct: 292 VRSEQTLEESRTGYKPKEVGGVPGAVSNVGP--VQGTKSNEVKDKYTKSQTTTNYEISTT 349 Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403 K++R++ AVVV+ + G+ L I +V G + +RG Sbjct: 350 VKDVKEPLAKIKRITAAVVVDGHYKEDKDGKKEFVPLTKLELTNIENLVKNTIGYDPKRG 409 Query: 404 DTITITSMDFLENQLFNSGT 423 D+++++S F N N T Sbjct: 410 DSVSVSSFQFTGNSANNEPT 429 >gi|331683490|ref|ZP_08384091.1| flagellar M-ring protein FliF [Escherichia coli H299] gi|331079705|gb|EGI50902.1| flagellar M-ring protein FliF [Escherichia coli H299] Length = 552 Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 117/418 (27%), Positives = 197/418 (47%), Gaps = 40/418 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+ V +M+ + + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIVTGSAAVAVMVALI--LWAKTPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDKGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ + S+ SE S P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEALTREAMGFSEKRGDSLNVVNSPF 429 >gi|253990094|ref|YP_003041450.1| flagellar MS-ring protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781544|emb|CAQ84707.1| flagellar basal-body m-ring protein [Photorhabdus asymbiotica] Length = 567 Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 123/427 (28%), Positives = 205/427 (48%), Gaps = 45/427 (10%) Query: 26 ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISV 85 ++ I + I LF+ ++ SP Y LY L D I L++ NI +R ++NGS+I + Sbjct: 35 SAAIAIVIALFL----WLRSPDYRVLYSNLSDKDGGEIVTQLTQLNIPYRFAENGSAIMI 90 Query: 86 PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145 P+ V + R+ LA QGLP + +G+EL DK FG++ F +++ RALEGE++RTI+S Sbjct: 91 PAGQVHETRLRLAQQGLPKGGA-AGFELLDK-EKFGISQFSEQVNYQRALEGELSRTIES 148 Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLD 203 + + ARVH+ +P F + P+ASV + + + AI H+V+++V L Sbjct: 149 LGPVQNARVHLALPKPSLFVREQKSPSASVTVGLLQGRTLDEGQINAIVHMVSSSVAGLP 208 Query: 204 MGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAV 262 +VT++D G+LLT A+ R++ L +Q +++ + I L +G N + V Sbjct: 209 PSNVTIVDQAGRLLTQADATGRDLNTSQLKYIQEVENRFQQRIEAILTPVVGRGNVHAQV 268 Query: 263 VAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS--------------QP------ 302 A+++ ++ Y P+ ++ SK SE S QP Sbjct: 269 TAQVDFSRREETAEEYKPNQPPNQAAVRSKQLSESEQSGGPLVGGIPGALSNQPSPPPSA 328 Query: 303 --ESAVTVEQNMPHVSDRKVPLPRSLENTDKK----------EEQSNYEINTKSIATTHD 350 E T E N SD+K S N++++ +E +NYE++ Sbjct: 329 PIEKPNTKESNKSDKSDKKT---SSSGNSNERMVNNNRNNRRDETTNYEVDRTIRHVQQQ 385 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 +ERLS+AVVVN E Q LA+I + A G + RGD++ + + Sbjct: 386 AGGVERLSVAVVVNY-VTVEGKNGPETQALTPEQLAKIEALTREAMGFSKERGDSLNVVN 444 Query: 411 MDFLENQ 417 F E++ Sbjct: 445 TPFTESK 451 >gi|270262379|ref|ZP_06190651.1| flagellar M-ring protein FliF [Serratia odorifera 4Rx13] gi|270044255|gb|EFA17347.1| flagellar M-ring protein FliF [Serratia odorifera 4Rx13] Length = 567 Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 115/414 (27%), Positives = 202/414 (48%), Gaps = 44/414 (10%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + SP Y LY L D I L++ NI +R ++NG+++ +P+ V + R+ LA Q Sbjct: 46 LWAKSPDYRVLYSNLNDRDGGAIVTQLTQMNIPYRFAENGAALMIPADKVHETRLRLAQQ 105 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F ++I RALEGE++RTI+S+ + ARVH+ +P Sbjct: 106 GLPKGGA-VGFELLDQ-EKFGISQFSEQINYQRALEGELSRTIESLGPVQNARVHLALPK 163 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + P+ASV + RA++ AI ++V+++V L G+VTV+D G+ Sbjct: 164 PSLFVREQKSPSASVTLTLQPGRALDDG---QINAIVYMVSSSVAGLPPGNVTVVDQAGR 220 Query: 216 LLTANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT ++ R++ L +++ + I LA +G N + V A+++ T++ Sbjct: 221 LLTQSDGAGRDLNAAQLKYANEVENRYQRRIEAILAPMVGNANVHAQVTAQIDFATREQT 280 Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQPESAVTVE----------- 309 + Y P+ ++ S+ +SE ++QP + T Sbjct: 281 DEEYQPNQLPNQAAVRSQQMSQSEQLGGPQVGGVPGALSNQPSAPATAPIETAKTNAAAG 340 Query: 310 ----QNMPH-VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 P+ + R S +++E +NYE++ T ++RLS+AVVVN Sbjct: 341 NNANGAKPNAAATRSTAANGSGPQNTRRDETTNYEVDRTIRHTQQKAGTVQRLSVAVVVN 400 Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 R + G+ K LA+I +V + G +S RGDT+ + + F + ++ Sbjct: 401 Y-RGVDKDGKPLPMSK--EQLAQIESLVRESMGFSSSRGDTLNVVNTPFTDTEV 451 >gi|148546737|ref|YP_001266839.1| flagellar MS-ring protein [Pseudomonas putida F1] gi|148510795|gb|ABQ77655.1| flagellar M-ring protein FliF [Pseudomonas putida F1] Length = 592 Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 143/571 (25%), Positives = 253/571 (44%), Gaps = 87/571 (15%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92 + + A + P Y LY L D ++ L+ A+I + + N ++ V + + + Sbjct: 50 VAIGFAVVLWSQQPDYRPLYGSLSGMDTKQVMDTLAAADIPYNVEPNSGALLVKADDLSR 109 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 AR+ LAA G+ S N G+EL DK G + FM+ R+LEGE+ART+ S++ + AA Sbjct: 110 ARLKLAAAGVAPSDGNVGFELLDKEQGLGTSQFMEATRYRRSLEGELARTVSSLNNVKAA 169 Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVL 210 RVH+ +P F + +P+ASV++ ++ + AI +LVA +VP LD VTV+ Sbjct: 170 RVHLAIPKSSVFVRDERKPSASVLVELYPGRALEAGQVMAIVNLVATSVPELDKSQVTVV 229 Query: 211 DSTGKLLTANEMERNIL---GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELN 267 D G LL+ +++ + L GK + ++ + ++ L LG D +++ V A+L+ Sbjct: 230 DQKGNLLS-EQIQDSALTQAGKQFDYSRRVESMLTQRVHNILLPVLGNDRYKAEVSADLD 288 Query: 268 MDTQQIREIVYDPDSKVERSIRLSKDAQRSET-----------SQPESAVTVEQ------ 310 + ++PD RS + S D QR+ + +QP A + Q Sbjct: 289 FSAVESTSEQFNPDQPALRSEQ-SVDEQRASSQGPQGVPGALSNQPPGAASAPQTTGGAA 347 Query: 311 ---------------NMPHVSDRKVPLPRSLENTDKKEEQS--NYEINTKSIATTHDNYK 353 N + D P K +QS N+E++ T + Sbjct: 348 TPAAAIQPGQPLVDANGQQIMDPATGQPMLAPYPSDKRQQSTKNFELDRSISHTRQQQGR 407 Query: 354 LERLSIAVVVN-KGRLTEVLGRS--ADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 + RLS+AVVV+ + ++ G + A G D LA ++V A G ++ RGD++T+ + Sbjct: 408 MTRLSVAVVVDDQVKIDPATGDTTRAPWGAED--LARFTRLVQDAVGFDASRGDSVTVIN 465 Query: 411 MDFLENQLFNSGTV----QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 + F ++ + Q F DI+ + V+ LV + G L L+NI Sbjct: 466 VPFAADRGEEIADIAFYQQPWFWDIV-KQVLGVVFILVLVFGVLRPV---------LNNI 515 Query: 467 DDAKKG-------EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF-SHSRNLQSR 518 K E+GG L G + ND ++L + S S +++ Sbjct: 516 TGGGKQAAPDSDMELGGMMGLD----------GELANDRVSLGGPTSILLPSPSEGYEAQ 565 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKW 549 +N+ + ++ + R A++++ W Sbjct: 566 LNA---------IKGLVAEDPGRVAQVVKDW 587 >gi|238788332|ref|ZP_04632126.1| Flagellar M-ring protein [Yersinia frederiksenii ATCC 33641] gi|238723578|gb|EEQ15224.1| Flagellar M-ring protein [Yersinia frederiksenii ATCC 33641] Length = 569 Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 136/546 (24%), Positives = 247/546 (45%), Gaps = 64/546 (11%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + SP Y LY L D I L++ NI +R +D+G ++ +P+ V + R+ LA Q Sbjct: 46 LWAKSPDYRVLYSNLSDRDGGDIVTQLTQLNIPYRFADHGGALLIPADKVHETRLRLAQQ 105 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI ++ ++ RVH+ MP Sbjct: 106 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIGTLGPVLNVRVHLAMPK 163 Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + PTASV + A+ P AI ++V+++V L +VTV+D TG+LL Sbjct: 164 PSLFVREQKSPTASVTL-ALQPGRALDDGQINAIVYMVSSSVAGLPPANVTVVDQTGRLL 222 Query: 218 T-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 T ++ R++ L +++ + I LA +G N + V A+++ +++ + Sbjct: 223 TQSDSAGRDLNAAQLKFTNEVENRFQRRIETILAPMVGSGNVHAQVTAQVDFASREQTDE 282 Query: 277 VYDPDSKVERSIRLSKDAQRSE--------------TSQPESAVTVEQNMPHVSDRKVPL 322 Y P+ + S+ SE ++QP + +P + Sbjct: 283 EYKPNQAANQGAVRSQQVSSSEQLGGSNVGGVPGALSNQPSATPVAPIEVPQPAAAPGAT 342 Query: 323 ------------PRSLENT-----DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365 P + +T + ++ +N+E++ T ++RLS+AVVVN Sbjct: 343 GAAANNANAANSPATTRSTATSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVNY 402 Query: 366 G--RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 G + + + + DQ LA++ + A G ++ RGDT+ + + F N N+ Sbjct: 403 GSDKAGKPIALTKDQ------LAQVESLTREAMGFSTDRGDTLNVVNTPF--NATDNASG 454 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 + F S F ++NA +L+ L+ L +R L I + + S+ + Sbjct: 455 NALPFWQQPS-FFDQLLNAGRYLLILLVAWILWRKLVRPL--IAKKQIADKAAASVNNIV 511 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 + A T + +AL N Q R+++ V Q R+ + + + A Sbjct: 512 QTAQATETAKQSKEELALRKKN----------QQRVSAEVQAQ---RIRELADKDPRVVA 558 Query: 544 KILRKW 549 ++R+W Sbjct: 559 LVIRQW 564 >gi|26991058|ref|NP_746483.1| flagellar MS-ring protein [Pseudomonas putida KT2440] gi|24986091|gb|AAN69947.1|AE016633_5 flagellar basal-body M-ring protein FliF [Pseudomonas putida KT2440] Length = 592 Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 143/571 (25%), Positives = 253/571 (44%), Gaps = 87/571 (15%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92 + + A + P Y LY L D ++ L+ A+I + + N ++ V + + + Sbjct: 50 VAIGFAVVLWSQQPDYRPLYGSLSGMDTKQVMDTLAAADIPYNVEPNSGALLVKADDLSR 109 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 AR+ LAA G+ S N G+EL DK G + FM+ R+LEGE+ART+ S++ + AA Sbjct: 110 ARLKLAAAGVAPSDGNVGFELLDKEQGLGTSQFMEATRYRRSLEGELARTVSSLNNVKAA 169 Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVL 210 RVH+ +P F + +P+ASV++ ++ + AI +LVA +VP LD VTV+ Sbjct: 170 RVHLAIPKSSVFVRDERKPSASVLVELYPGRALEAGQVMAIVNLVATSVPELDKSQVTVV 229 Query: 211 DSTGKLLTANEMERNIL---GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELN 267 D G LL+ +++ + L GK + ++ + ++ L LG D +++ V A+L+ Sbjct: 230 DQKGNLLS-EQIQDSALTQAGKQFDYSRRVESMLTQRVHNILQPVLGNDRYKAEVSADLD 288 Query: 268 MDTQQIREIVYDPDSKVERSIRLSKDAQRSET-----------SQPESAVTVEQ------ 310 + ++PD RS + S D QR+ + +QP A + Q Sbjct: 289 FSAVESTSEQFNPDQPALRSEQ-SVDEQRASSQGPQGVPGALSNQPPGAASAPQTTGGAA 347 Query: 311 ---------------NMPHVSDRKVPLPRSLENTDKKEEQS--NYEINTKSIATTHDNYK 353 N + D P K +QS N+E++ T + Sbjct: 348 TPAAAIQPGQPLVDANGQQIMDPATGQPMLAPYPSDKRQQSTKNFELDRSISHTRQQQGR 407 Query: 354 LERLSIAVVVN-KGRLTEVLGRS--ADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 + RLS+AVVV+ + ++ G + A G D LA ++V A G ++ RGD++T+ + Sbjct: 408 MARLSVAVVVDDQVKIDPATGDTTRAPWGAED--LARFTRLVQDAVGFDASRGDSVTVIN 465 Query: 411 MDFLENQLFNSGTV----QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 + F ++ + Q F DI+ + V+ LV + G L L+NI Sbjct: 466 VPFAADRGEEIADIAFYQQPWFWDIV-KQVLGVVFILVLVFGVLRPV---------LNNI 515 Query: 467 DDAKKG-------EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF-SHSRNLQSR 518 K E+GG L G + ND ++L + S S +++ Sbjct: 516 TGGGKQAAPDSDMELGGMMGLD----------GELANDRVSLGGPTSILLPSPSEGYEAQ 565 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKW 549 +N+ + ++ + R A++++ W Sbjct: 566 LNA---------IKGLVAEDPGRVAQVVKDW 587 >gi|318605263|emb|CBY26761.1| flagellar M-ring protein FliF [Yersinia enterocolitica subsp. palearctica Y11] Length = 559 Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 134/536 (25%), Positives = 243/536 (45%), Gaps = 54/536 (10%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + SP Y LY L D I L++ NI +R +DNG ++ +P+ V + R+ LA Q Sbjct: 46 LWAKSPDYRVLYSNLNDRDGGDIVTQLTQLNIPYRFADNGGALLIPADKVHETRLRLAQQ 105 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI ++ ++ RVH+ MP Sbjct: 106 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIGTLGPVLNVRVHLAMPK 163 Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + PTASV + A+ P AI ++V+++V L +VTV++ TG+LL Sbjct: 164 PSLFVREQKSPTASVTL-ALQPGRALDDGQINAIVYMVSSSVAGLPPANVTVVNQTGRLL 222 Query: 218 T-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 T ++ R++ L +++ + I LA +G N + V A+++ +++ + Sbjct: 223 TQSDSAGRDLNAAQLKFTNEVENRFQRRIETILAPMVGSGNVHAQVTAQVDFASREQTDE 282 Query: 277 VYDPDSKVERSIRLSKDAQRSE------------------TSQPESAVTVEQNMPHVSDR 318 Y P+ + S+ SE ++ P + + V Q P Sbjct: 283 EYKPNQAANQGAVRSQQVSTSEQLGGTNVGGVPGALSNQPSATPVAPIEVPQATPAAGAG 342 Query: 319 KVPLPRSLENT---DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG--RLTEVLG 373 T + ++ +N+E++ T ++RLS+AVVVN G + + + Sbjct: 343 AAANAAKQTATSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVNYGSDKAGKPIA 402 Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433 S DQ LA++ + A G ++ RGDT+ + + F N ++ + F S Sbjct: 403 LSKDQ------LAQVESLTREAMGFSTVRGDTLNVVNTPF--NATDDASGSNLPFWQQPS 454 Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493 F ++N +L+ L+ L +R L I ++ + S+ + + T Sbjct: 455 -FFDQLLNIGRYLLILLVAWILWRKLVRPL--IAKKQEADKAAASVNNIVQAAQTTETAK 511 Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549 + +AL N Q R+++ V Q R+ + + + A ++R+W Sbjct: 512 QTKEELALRKKN----------QQRVSAEVQAQ---RIRELADKDPRIVALVIRQW 554 >gi|238751780|ref|ZP_04613268.1| Flagellar M-ring protein [Yersinia rohdei ATCC 43380] gi|238710051|gb|EEQ02281.1| Flagellar M-ring protein [Yersinia rohdei ATCC 43380] Length = 564 Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 140/543 (25%), Positives = 250/543 (46%), Gaps = 63/543 (11%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + SP Y LY L D I L++ NI +R +D+G ++ +P+ V + R+ LA Q Sbjct: 46 LWAKSPDYRVLYSNLSDRDGGDIVTQLTQLNIPYRFADSGGALLIPADKVHETRLRLAQQ 105 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI ++ ++ RVH+ MP Sbjct: 106 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIGTLGPVLNVRVHLAMPK 163 Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + PTASV + A+ P AI ++V+++V L +VTV+D TG+LL Sbjct: 164 PSLFVREQKSPTASVTL-ALQPGRALDDGQINAIVYMVSSSVAGLPPANVTVVDQTGRLL 222 Query: 218 T-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 T ++ R++ L +++ + I LA +G N + V A+++ +++ + Sbjct: 223 TQSDSAGRDLNAAQLKFTNEVENRFQRRIETILAPMVGSGNVHAQVTAQVDFASREQTDE 282 Query: 277 VYDPDSKVE----RSIRLSKDAQ--------------RSETSQPESAVTVEQNMPHVSDR 318 Y P+ RS ++S Q ++ P + + V Q + Sbjct: 283 EYKPNQSANQGAVRSAQISTSEQLGGSNVGGVPGALSNQPSATPVAPIEVTQPAGANNAN 342 Query: 319 KVPLPR--------SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG--RL 368 P + + + ++ +NYE++ T ++RLS+AVVVN G + Sbjct: 343 AAARPAATPAARSTATSSNSRHDQTTNYEVDRTIRHTQQQAGMVQRLSVAVVVNYGSDKA 402 Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSF 428 + + + DQ LA++ + A G ++ RGDT+ + + F N ++ + F Sbjct: 403 GKPIALTKDQ------LAQVESLTREAMGFSTNRGDTLNVVNTPF--NATDDTTGRALPF 454 Query: 429 MDILSRHFATVINALVFLVGTLLVTFLGLHALRR--LHNIDDAKKGEVGGKSILSPPPIS 486 S F ++NA +L+ LLVT++ L R L + A K S++ ++ Sbjct: 455 WQQQS-FFDQLLNAGRYLL-ILLVTWILWRKLVRPMLAKKNVADKAAASVNSMVQAAQVT 512 Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546 V + +AL N Q RI++ V Q R+ + + + A ++ Sbjct: 513 ETVKQS---KEELALRKKN----------QQRISAEVQAQ---RIRELADKDPRVVALVI 556 Query: 547 RKW 549 R+W Sbjct: 557 RQW 559 >gi|51246508|ref|YP_066392.1| flagellar M-ring protein (FliF) [Desulfotalea psychrophila LSv54] gi|50877545|emb|CAG37385.1| related to flagellar M-ring protein (FliF) [Desulfotalea psychrophila LSv54] Length = 545 Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 120/417 (28%), Positives = 211/417 (50%), Gaps = 42/417 (10%) Query: 20 TRILILASVILVPIMLFMAARFFVNSPHYDN--LYVKLEVSDVNRISVALSEANIDFRIS 77 +R L L +V+++ + F A + + D LY L +D ++ L I + + Sbjct: 41 SRQLSLGAVLILCLAAF--ATIIIQTRTVDQQLLYANLSATDAAAVTEWLKGQKIPYSLK 98 Query: 78 DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137 D+G S+ + S+ + +AR+ LAA GLPS G+E+FDK N F LT+++Q+I RAL+G Sbjct: 99 DSGKSVWIGSNKIYQARLDLAANGLPSGG-GVGFEVFDKQN-FALTNYVQKINYSRALQG 156 Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLV 195 E+ARTI S++ I + RVH+ +P+ F+ + TASV++ + + E I +LV Sbjct: 157 ELARTISSLAPIESTRVHLAIPEKRLFKNQQKQATASVILSLVPGKTLSQEQVEGIAYLV 216 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKSLSIVQAIQHEIEMNINKALAAF 252 A +VP L+ +V VLDS+G +L E +R + L+ + I+ ++EM L Sbjct: 217 AGSVPGLETDNVKVLDSSGVILGDREQNGGDRALSSDMLAFQKEIETQMEMRAQDLLTRT 276 Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNM 312 +G D+ V A ++ + E +D D V RS +++ ++ R ++ VE N+ Sbjct: 277 MGADHALVRVTATVDFAKVEKTEEFFDADDPVIRSEQINNESSRG--AEAGGIPGVESNL 334 Query: 313 PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372 + P +++N +NYEI+ + +++LS++V+V Sbjct: 335 QGTQKKSGTGPSAVKNG----RTTNYEISKTISHIVNPVGTVKKLSVSVLV--------- 381 Query: 373 GRSADQGKID------SY-------LAEINKIVSAATGINSRRGDTITITSMDFLEN 416 AD+ K+D SY L + +V++A G+ + RGD I + SM F ++ Sbjct: 382 ---ADRQKLDPDTQEPSYTPFSTTELKALENMVASAIGLVATRGDVINVISMPFFQD 435 >gi|205352337|ref|YP_002226138.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205272118|emb|CAR36971.1| flagellar basal-body M-ring protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326627387|gb|EGE33730.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 558 Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 128/430 (29%), Positives = 206/430 (47%), Gaps = 54/430 (12%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R LA Q Sbjct: 44 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELR--LAQQ 101 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 102 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 159 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + P+ASV + RA++ A+ HLV++AV L G+VT++D +G Sbjct: 160 PSLFVREQKSPSASVTVTLEPGRALD---EGQISAVVHLVSSAVAGLPPGNVTLVDQSGH 216 Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT +N R++ L ++ I+ I L+ +G N + V A+L+ + Sbjct: 217 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKDQT 276 Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309 E Y P+ ++ S+ SE ++QP E+ + Sbjct: 277 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 336 Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369 QN P S NT ++ E SNYE++ T + +ERLS+AVVVN L Sbjct: 337 QNTPQTSTSTNSNSAGPRNT-QRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLA 395 Query: 370 E--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG----- 422 + L +ADQ K +I + A G + +RGDT+ + + F + + N+G Sbjct: 396 DGKPLPLTADQMK------QIEDLTREAMGFSDKRGDTLNVVNSPF--SAVDNTGGELPF 447 Query: 423 TVQVSFMDIL 432 Q SF+D L Sbjct: 448 WQQQSFIDQL 457 >gi|313901521|ref|ZP_07834968.1| flagellar M-ring protein FliF [Thermaerobacter subterraneus DSM 13965] gi|313468216|gb|EFR63683.1| flagellar M-ring protein FliF [Thermaerobacter subterraneus DSM 13965] Length = 551 Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 110/339 (32%), Positives = 174/339 (51%), Gaps = 24/339 (7%) Query: 44 NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP 103 + P + L+ +L+ +D I+ L E I F+++ G +I VP+ V + R+ LAAQGLP Sbjct: 48 SGPQWAPLFTQLDPTDAAAIAGQLEEQGIPFQLAQGGQAILVPAEQVDRLRLDLAAQGLP 107 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 + G EL + + G T F +++ +R L+GE+ARTI + G+ AARVH+V P+ Sbjct: 108 RQGT-VGLELLENM-PMGATEFERQVQYLRGLQGELARTIGRLEGVEAARVHVVRPERSP 165 Query: 164 FRKIGARPTASVMIRAINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLLTAN 220 F TA+V+++ + P E +R HLVA+AV L DVTV+D+TG+LL+A Sbjct: 166 FVSQQRPATAAVLVQ-LKPGAELEPEQVRSIMHLVASAVEGLKPEDVTVVDTTGRLLSAG 224 Query: 221 -----EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 E + G + + + E++ ++ L LG N + V AELN D Q + Sbjct: 225 VELAQEGTAVVPGDRFEVERRFEAELQRSLQTLLEQVLGPGNVIARVNAELNFDQQVVER 284 Query: 276 IVYDPDSKVERSI-RLSKDAQRSETSQP-ESAVTVEQNMPHVSDRKVPLPRSLENT---D 330 +++P + + I R ++ Q + T QP V + N+P P+ T Sbjct: 285 HLFEPPADGGQGILRSIQELQETFTGQPAPGGVPGDSNIPT-------YPQVGGGTLDYQ 337 Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369 + E +NYE+N + RLS+AVVVN G LT Sbjct: 338 RSERTANYEVNQVVDRVQVAPGAVRRLSVAVVVN-GDLT 375 >gi|89094455|ref|ZP_01167395.1| flagellar M-ring protein [Oceanospirillum sp. MED92] gi|89081347|gb|EAR60579.1| flagellar M-ring protein [Oceanospirillum sp. MED92] Length = 554 Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 131/497 (26%), Positives = 228/497 (45%), Gaps = 33/497 (6%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92 + + A + P L+ L SD N+I L N+ + +G +I VP V + Sbjct: 35 VAIGFAVVLWSQKPEQRVLFSNLTFSDANQIIEQLRLYNVPYTFDADGRAILVPDEHVHQ 94 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 AR+ LAA+G +S G+E+ D+ S G + FM+ R LEGE+ARTI S++ + A Sbjct: 95 ARLKLAAEGF-TSDKTVGFEILDREQSLGTSQFMETTKYRRGLEGELARTISSMTSVRNA 153 Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVL 210 RVH+ +P F + +PTASV + + + + +I +LVA+++P LD+ DVTV+ Sbjct: 154 RVHLAIPKDTVFIRDTRKPTASVFLELFSGRKLERDQVASIANLVASSIPALDVKDVTVV 213 Query: 211 DSTGKLLTANEMERNIL--GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM 268 D G+LL + + +++ K L ++I+ + +N L +G+ FR+ V A+++ Sbjct: 214 DQRGRLLNMRDKDVDVVLAAKQLEYTRSIEDTLLNRVNSILQPVVGMGRFRAEVSADVDF 273 Query: 269 DTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE- 327 + + + +Y+PD RS + + D R P N P VP S E Sbjct: 274 TSVEQTDELYNPDLPALRSEQ-TMDESRVGNGAPVGIPGALSNQPP-GQSSVPEQASGEG 331 Query: 328 --------NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK-GRLTEVLGRSADQ 378 + +K+ N+E++ T H ++ RL++AVVV+ + G ++ Sbjct: 332 VIAGNGQPGSSRKQATRNFELDRTISYTKHQQGRVRRLTVAVVVDDLASVNAETGETSRT 391 Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSR 434 + L + +V A G ++ RGD++ + + F + + + Q MD++ + Sbjct: 392 PWDQNELERLRILVQDAVGFSTLRGDSVNVVNTPFAAEEPIVTEEIPLWKQEWVMDVMKQ 451 Query: 435 HFATVINALVFLVGTLLVTFLGLHALRRLHNIDD-AKKGEV--------GGKSILSPPPI 485 A + LV + G L L A N+ GEV GG S + Sbjct: 452 VMAAIF-VLVLVFGILRPILRNLAAAGTAGNVAGLGAAGEVSAELEGLEGGD--FSADSV 508 Query: 486 SSAVTTGLMPNDNIALD 502 + GL+P N + D Sbjct: 509 TFGSDDGLLPTPNESFD 525 >gi|313497796|gb|ADR59162.1| FliF [Pseudomonas putida BIRD-1] Length = 592 Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 143/571 (25%), Positives = 253/571 (44%), Gaps = 87/571 (15%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92 + + A + P Y LY L D ++ L+ A+I + + N ++ V + + + Sbjct: 50 VAIGFAVVLWSQQPDYRPLYGSLSGMDTKQVMDTLAAADIPYNVEPNSGALLVKADDLSR 109 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 AR+ LAA G+ S N G+EL DK G + FM+ R+LEGE+ART+ S++ + AA Sbjct: 110 ARLKLAAAGVAPSDGNVGFELLDKEQGLGTSQFMETTRYRRSLEGELARTVSSLNNVKAA 169 Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVL 210 RVH+ +P F + +P+ASV++ ++ + AI +LVA +VP LD VTV+ Sbjct: 170 RVHLAIPKSSVFVRDERKPSASVLVELYPGRALEAGQVMAIVNLVATSVPELDKSQVTVV 229 Query: 211 DSTGKLLTANEMERNIL---GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELN 267 D G LL+ +++ + L GK + ++ + ++ L LG D +++ V A+L+ Sbjct: 230 DQKGNLLS-EQIQDSALTQAGKQFDYSRRVESMLTQRVHNILQPVLGNDRYKAEVSADLD 288 Query: 268 MDTQQIREIVYDPDSKVERSIRLSKDAQRSET-----------SQPESAVTVEQ------ 310 + ++PD RS + S D QR+ + +QP A + Q Sbjct: 289 FSAVESTSEQFNPDQPALRSEQ-SVDEQRASSQGPQGVPGALSNQPPGAASAPQTTGGAA 347 Query: 311 ---------------NMPHVSDRKVPLPRSLENTDKKEEQS--NYEINTKSIATTHDNYK 353 N + D P K +QS N+E++ T + Sbjct: 348 TPAAAIQPGQPLVDANGQQIMDPATGQPMLAPYPSDKRQQSTKNFELDRSISHTRQQQGR 407 Query: 354 LERLSIAVVVN-KGRLTEVLGRS--ADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 + RLS+AVVV+ + ++ G + A G D LA ++V A G ++ RGD++T+ + Sbjct: 408 MTRLSVAVVVDDQVKIDPATGDTTRAPWGAED--LARFTRLVQDAVGFDASRGDSVTVIN 465 Query: 411 MDFLENQLFNSGTV----QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 + F ++ + Q F DI+ + V+ LV + G L L+NI Sbjct: 466 VPFAADRGEEIADIAFYQQPWFWDIV-KQVLGVVFILVLVFGVLRPV---------LNNI 515 Query: 467 DDAKKG-------EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF-SHSRNLQSR 518 K E+GG L G + ND ++L + S S +++ Sbjct: 516 TGGGKQAAPDSDMELGGMMGLD----------GELANDRVSLGGPTSILLPSPSEGYEAQ 565 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKW 549 +N+ + ++ + R A++++ W Sbjct: 566 LNA---------IKGLVAEDPGRVAQVVKDW 587 >gi|241763655|ref|ZP_04761705.1| flagellar M-ring protein FliF [Acidovorax delafieldii 2AN] gi|241367130|gb|EER61496.1| flagellar M-ring protein FliF [Acidovorax delafieldii 2AN] Length = 561 Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 124/434 (28%), Positives = 204/434 (47%), Gaps = 35/434 (8%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSS 105 P Y L+ L D I LS+ N+ ++ +D G +I +PS V R+ LA QGLP Sbjct: 53 PDYRVLFANLSDKDGGAIVAQLSQMNVPYKYADGGGAILIPSDRVHDVRLRLATQGLPKG 112 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 S +G+EL + N FG+T F + + R LEGE+ R+IQ++S + ARVH+ +P+ F Sbjct: 113 SV-AGFELMES-NRFGITQFQERLNFQRGLEGELTRSIQALSSVQGARVHLALPNQNGFF 170 Query: 166 KIGARPTASVMIRAINPS-VYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE- 221 + +P+ASV++ +++P + A+ I HLVA++VP L V+VLD TGKLL+ + Sbjct: 171 REQQKPSASVLV-SLHPGRILDRAQLAGIVHLVASSVPELAPSAVSVLDDTGKLLSQSPD 229 Query: 222 --MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM----DTQQIRE 275 + + L VQ I+ + I L +G +N ++ V AE++ T + Sbjct: 230 TAAGTGVDAQQLLYVQQIEQQYTRRIMDILEPVVGRNNVKAQVSAEVDFSQTESTSEQHR 289 Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV-----PLPR------ 324 PD+ RS ++ + P N P + P P Sbjct: 290 PNQSPDASAVRSQQVVESNGPQGNPLPTGVPGAASNQPPAASTAPINGANPAPTAAGGQQ 349 Query: 325 --SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382 +L K+E NYE++ T + ++RL+ AVVVN + E G++ + Sbjct: 350 QGALGAGSKRESVINYEVDKTVRVTRGGSGAVKRLTAAVVVNY-QSAEDKGKTVAKALTP 408 Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSF-----MDILSRHFA 437 L ++ +V G N RGD++ + + F Q+ + V M L++ FA Sbjct: 409 EQLEQMTALVRETIGFNKERGDSVNLMNTPF---QVDVTPANDVPLWKQPEMLELAKSFA 465 Query: 438 TVINALVFLVGTLL 451 + A++F LL Sbjct: 466 WPVGAVLFAALVLL 479 >gi|319944162|ref|ZP_08018438.1| flagellar basal-body M-ring protein FliF [Lautropia mirabilis ATCC 51599] gi|319742457|gb|EFV94868.1| flagellar basal-body M-ring protein FliF [Lautropia mirabilis ATCC 51599] Length = 574 Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 127/466 (27%), Positives = 221/466 (47%), Gaps = 49/466 (10%) Query: 20 TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN 79 T+I A VI + + ++A + P + LY L + + L + N+ ++ ++ Sbjct: 30 TKIKAGAGVIAL-GAVAVSAWLWSQQPDWKVLYNNLPDREGGAVIAQLVQMNVPYKYTEG 88 Query: 80 GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEI 139 G +I VP++MV AR+ LAAQGLP+S + +GYEL +K FG T F + + R LEGE+ Sbjct: 89 GGAIMVPANMVNDARLRLAAQGLPASDT-TGYELLEK-QRFGTTQFQERLNFQRGLEGEL 146 Query: 140 ARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-------AEAIR 192 AR+IQS++ + ARVH+ MP F + +P+ASVM+ ++Y + I Sbjct: 147 ARSIQSLAAVKQARVHLAMPVQSGFLREQQKPSASVML-----TLYPGRTLERGQVQGIL 201 Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAIQHEIEMNINKAL 249 LVA++VP++ V+V+D GKLL+ + E N ++ I+ + I+ L Sbjct: 202 ALVASSVPDMSPKQVSVVDQYGKLLSDLDGDGSEMNT--AQINYRNRIESTLTRRIDDLL 259 Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVY----DPDSKVERSIRL--SKDAQRSE----- 298 A +G N R+ V A+++ + Y +P + RS + S+D + Sbjct: 260 APIVGDGNIRAQVAADIDFTQSEATAETYAPNQNPGAAAMRSQQTMASRDGSGASDAAGG 319 Query: 299 -----TSQPESAVTVEQNMPHVSDRKVPLPRSLEN----TDKKEEQSNYEINTKSIATTH 349 ++QP + V+ N + R S + + ++E +NYE++ T + Sbjct: 320 VPGALSNQPPATVSAPINGAAQATRAAGSASSADGGTGVSTRQESVTNYEVDRTVKVTRN 379 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 + RLS+AV+VN+ + G+ + I +V A G ++ RGD++ + Sbjct: 380 QTGTIRRLSVAVLVNQKQTKGDDGKEVSTPLTPLEMQSIEALVKQAVGFSAERGDSVQVV 439 Query: 410 SMDFL--------ENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447 + F E L+ VS L + F V+ AL+ L+ Sbjct: 440 NAAFTKRPEVVDPEVPLWKDPET-VSLAKDLGKQFGFVLLALIILM 484 >gi|301168113|emb|CBW27699.1| flagellar basal-body M-ring protein [Bacteriovorax marinus SJ] Length = 554 Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 119/437 (27%), Positives = 209/437 (47%), Gaps = 40/437 (9%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 I+ +FF SL + + L S+ + F+ + + D LY +L D + Sbjct: 8 IIRNFTEFF---NSLDLNKKIGLVSIAAFIVACFVGIVIWASKTRMDVLYTELNREDSKK 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I+V L E I + +S++G +IS+P ++ K R+ +A G+ + S GYE+FDK SFG Sbjct: 65 IAVLLEEKKIPYEMSNDGKTISIPEELINKWRLEIATLGV-NFSGTVGYEVFDK-QSFGT 122 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---- 178 TSF+Q++ + RALEGE+ +TI+ I G+ ARVH+ +P+ F P+ASV++ Sbjct: 123 TSFVQKVNKQRALEGELVKTIKYIRGVKRARVHLSIPESSPFVSEKKAPSASVVVDLERG 182 Query: 179 -AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI 237 + P K + LV++++ + +V +LD GK L+ N +G ++ A Sbjct: 183 VTLTPDEIK---GVASLVSSSIDGMRNENVVILDDRGKKLSEN------IGDPMTAYTAN 233 Query: 238 QHEIEMNINKA--------LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 + +E +N+ L+ +G + V L+ + +D ++K S Sbjct: 234 RMALEGKVNRKYEKQIEDILSKVVGAGKVIAKVTVNLDFTESVSTKTEFDGENKAVLSEV 293 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVP-LPRSLENTDKKEEQSNYEINTKSIATT 348 + P+ N+P ++ P +P + N DK NY + +K + Sbjct: 294 SNTQKLNGSRPSPQGIPGARSNLP--GEQPQPGIPETRNNVDKSLATRNYNVPSKVTKSK 351 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY-------LAEINKIVSAATGINSR 401 + + ++S AV+++ GR +V G AD Y LA + IVS+ GI++R Sbjct: 352 NPTAGIRKISAAVMID-GRRVQVKG--ADGAISTQYERWSEADLANFSAIVSSTLGIDAR 408 Query: 402 RGDTITITSMDFLENQL 418 RGD I I +M+F + + Sbjct: 409 RGDQIVIKNMEFAQEDM 425 >gi|188534120|ref|YP_001907917.1| flagellar MS-ring protein [Erwinia tasmaniensis Et1/99] gi|188029162|emb|CAO97034.1| Flagellar basal-body M-ring protein [Erwinia tasmaniensis Et1/99] Length = 571 Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 114/415 (27%), Positives = 198/415 (47%), Gaps = 50/415 (12%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y LY L D I L++ N+ ++ D G ++ VP++ V + R+ LA+Q Sbjct: 46 LWAKQPDYRVLYNNLSNEDGGAIVTQLTQMNVPYKFDDRGGALLVPAAQVHELRLRLASQ 105 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL DK FG++ F ++I RALEGE+ARTI ++ + ARVH+ MP Sbjct: 106 GLPKGGA-VGFELLDK-EKFGISQFSEQINYQRALEGELARTIATLGPVKDARVHLAMPK 163 Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + P+ASV + A+ P A+ H+V+++V + G+VTV+D +G+LL Sbjct: 164 PTLFVREQKSPSASVTL-ALQPGRALDEGQINAVVHMVSSSVAGMPQGNVTVVDQSGRLL 222 Query: 218 TANEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 T N+ R++ L ++ + I L +G N + V A+++ + ++ + Sbjct: 223 TQNDTTGRDLNDAQLKYASDVETRYQQRIEAILGPIVGNSNVHAQVTAQIDFNKREKTDE 282 Query: 277 VYDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPHVSDR-KVPLP--------- 323 Y P+S E+ S+ SE +SA V N P ++ V P Sbjct: 283 QYAPNSNPEQQAVRSRQTSNSEQLGGQSAGGVPGALSNQPAPANAGPVTTPNNTNANGAN 342 Query: 324 ------------------RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365 ++ + + + +NYE+N + T + +++RLS+AVVVN Sbjct: 343 GANANNGQPANNAASGAQKTSPSNTRSDNTTNYEVNRTILHTKMNVGEVQRLSVAVVVNY 402 Query: 366 GRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 RS GK ++ + +I + A G + +RGD++ + + F +N Sbjct: 403 --------RSDAAGKPIALNEAQIKQIEDLTREAMGYSEKRGDSLNVVNSPFTQN 449 >gi|74312478|ref|YP_310897.1| flagellar MS-ring protein [Shigella sonnei Ss046] gi|73855955|gb|AAZ88662.1| flagellar basal-body MS(membrane and supramembrane)-ring and collar protein [Shigella sonnei Ss046] gi|323168943|gb|EFZ54623.1| flagellar M-ring protein FliF [Shigella sonnei 53G] Length = 552 Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 117/418 (27%), Positives = 197/418 (47%), Gaps = 40/418 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +M+ + + +P Y L+ L D I L++ NI + S+ + Sbjct: 25 LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYCFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ + S+ SE S P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429 >gi|320325114|gb|EFW81183.1| flagellar MS-ring protein [Pseudomonas syringae pv. glycinea str. B076] Length = 594 Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 149/556 (26%), Positives = 236/556 (42%), Gaps = 98/556 (17%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y LY L D +I L Sbjct: 24 LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + ANI++ + N ++ V S V +ARI LA G+ + +N G+E+ DK G + FM+ Sbjct: 84 TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINP 182 R LEGE+ARTI +++ + ARVH+ +P F + +P+ASV++ R++ P Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHE 240 S AI +LVA +VP L +TV+D G LL+ A E + GK + ++ Sbjct: 204 S---QVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGM 260 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 + + L LG D +++ V A ++ + ++PD RS + S + QRS +S Sbjct: 261 LTQRVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQ-SVNEQRSSSS 319 Query: 301 -----------QPESAVTVEQNM----------------------PHVSDRKVPLPRSLE 327 QP T QN + D P Sbjct: 320 GTGGVPGALSNQPPGPATAPQNATAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAP 379 Query: 328 NTDKKEEQS--NYEINTKSIATTHDNYKLERLSIAVVVN--------KGRLTEVLGRSAD 377 K QS N+E++ T +L RLS+AVVV+ G +T +AD Sbjct: 380 YPADKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAAD 439 Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF-------LENQLFNSGTVQVSFMD 430 LA ++V A G ++ RGD++++ ++ F L F S Q F D Sbjct: 440 -------LARFTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYS---QPWFWD 489 Query: 431 ILSRHFATVINALVFLVGTL--------------LVTFLGLHALRRLHNIDDAKKGEV-- 474 I+ + VI L+ + G L L F G L R+ +D GE+ Sbjct: 490 IV-KQAVGVIFILILVFGVLRPVLTNITTGKSKELAGFGGDAELGRMGGLD----GELSN 544 Query: 475 ------GGKSILSPPP 484 G +SIL P P Sbjct: 545 DRVSLGGPQSILLPSP 560 >gi|320329373|gb|EFW85366.1| flagellar MS-ring protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330880568|gb|EGH14717.1| flagellar MS-ring protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 594 Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 149/556 (26%), Positives = 236/556 (42%), Gaps = 98/556 (17%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y LY L D +I L Sbjct: 24 LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + ANI++ + N ++ V S V +ARI LA G+ + +N G+E+ DK G + FM+ Sbjct: 84 TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINP 182 R LEGE+ARTI +++ + ARVH+ +P F + +P+ASV++ R++ P Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHE 240 S AI +LVA +VP L +TV+D G LL+ A E + GK + ++ Sbjct: 204 S---QVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGM 260 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 + + L LG D +++ V A ++ + ++PD RS + S + QRS +S Sbjct: 261 LTQRVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQ-SVNEQRSSSS 319 Query: 301 -----------QPESAVTVEQNM----------------------PHVSDRKVPLPRSLE 327 QP T QN + D P Sbjct: 320 STGGVPGALSNQPPGPATAPQNATAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAP 379 Query: 328 NTDKKEEQS--NYEINTKSIATTHDNYKLERLSIAVVVN--------KGRLTEVLGRSAD 377 K QS N+E++ T +L RLS+AVVV+ G +T +AD Sbjct: 380 YPADKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAAD 439 Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF-------LENQLFNSGTVQVSFMD 430 LA ++V A G ++ RGD++++ ++ F L F S Q F D Sbjct: 440 -------LARFTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYS---QPWFWD 489 Query: 431 ILSRHFATVINALVFLVGTL--------------LVTFLGLHALRRLHNIDDAKKGEV-- 474 I+ + VI L+ + G L L F G L R+ +D GE+ Sbjct: 490 IV-KQAVGVIFILILVFGVLRPVLTNITTGKSKELAGFGGDAELGRMGGLD----GELSN 544 Query: 475 ------GGKSILSPPP 484 G +SIL P P Sbjct: 545 DRVSLGGPQSILLPSP 560 >gi|261344120|ref|ZP_05971764.1| flagellar M-ring protein FliF [Providencia rustigianii DSM 4541] gi|282567712|gb|EFB73247.1| flagellar M-ring protein FliF [Providencia rustigianii DSM 4541] Length = 564 Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 144/549 (26%), Positives = 258/549 (46%), Gaps = 77/549 (14%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + SP Y L L D I L++ N+ ++I+DNGS+I VP+ V + R+ LA G Sbjct: 47 WFRSPDYRVLLSNLSAKDGGDIVGQLTQMNVPYQIADNGSAILVPADKVHELRLKLAQSG 106 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP N+G+EL DK FG++ F ++I RALEGE++RTI+S+S + +ARVH+ +P Sbjct: 107 LPKGG-NTGFELLDK-EQFGISQFSEQINYQRALEGELSRTIESLSPVQSARVHLAIPKP 164 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + PTASV + + V + AI H+V+++V L +V ++D TG+LLT Sbjct: 165 TLFVREQKLPTASVTVGLLPGRVLDEGQISAIVHMVSSSVTGLTAANVIIVDQTGRLLTN 224 Query: 220 NE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 N+ +++ + + + ++ ++ I L+ +G N + V A+++ + Y Sbjct: 225 NDNSQQSANSAQIKMTKEMETHLKERIEDILSPLVGRANIHAQVTAQMDFSKVEQTSEEY 284 Query: 279 D----PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD---- 330 PD+ RS + S+ Q S P N P VS P+ EN D Sbjct: 285 KPNQTPDAAAIRSRQNSESMQNSNGG-PGGVPGALSNQP-VSAPSAPI--EAENKDNTGK 340 Query: 331 ---------------KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS 375 +++E +NYE++ K T ++RLS+AV+VN Sbjct: 341 NNQNTTTTRNGTLNSQRDETTNYEVDRKISHTQRQIGVVDRLSVAVIVN---------YQ 391 Query: 376 ADQGK--------IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVS 427 A +G+ + +I+ + A G +++RGD++ IT N LF S + Sbjct: 392 AQEGEKGVEMKPLPPEMIKQIDALTREAMGYSTQRGDSLNIT------NSLFTSDAPAIE 445 Query: 428 FMDIL-SRHFATVINALVF---LVGTLLVTFLGLHALR-RLHNIDDAKKGEVGGKSILSP 482 +L S F V AL + ++ ++ F+ ++ + A++ + ++ Sbjct: 446 ETSLLNSPQF--VSQALDYGKIILIAIIAWFMWRFGIKPQWVKYRKAQQAQADAETF--- 500 Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRN--LQSRINSYVSKQSDLRLLHMIEINEE 540 I++ TT + + I N+D+ +R + R+++ + Q R+ M E + + Sbjct: 501 --IATQSTTPFVVEEEI-----NEDMDEKTRRRLTRQRVSAEIQSQ---RIREMAEKDPQ 550 Query: 541 RFAKILRKW 549 A ++R+W Sbjct: 551 VVAMVIRQW 559 >gi|149203111|ref|ZP_01880082.1| flagellar M-ring protein FliF [Roseovarius sp. TM1035] gi|149143657|gb|EDM31693.1| flagellar M-ring protein FliF [Roseovarius sp. TM1035] Length = 535 Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 149/544 (27%), Positives = 254/544 (46%), Gaps = 31/544 (5%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 R RI+++ + ++ + AR ++P LY LE S + AL + + + + + Sbjct: 14 RNRIIVIGAAFVMFWAVLALARM-ASTPSMTLLYAGLESSAAGEVVAALEQQGVTYEVRN 72 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 + +I V S+ + R+ LA +GLP S + SGYEL D ++ FG TS M + RA EGE Sbjct: 73 D--AILVDSTRRDELRMILAGEGLPRSGT-SGYELLDGLSGFGTTSQMFDAAYWRAKEGE 129 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV-YKSAEAIRHLVAA 197 +ARTI S IVAARVHI F++ R +ASV + +V K A A++ LVA+ Sbjct: 130 LARTIVSHPAIVAARVHIASTGANPFQRNVHR-SASVSVSTNGAAVSAKHARALQFLVAS 188 Query: 198 AVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDN 257 AV +L DV+++D+ G LL+ E + + + + + L A +G N Sbjct: 189 AVADLTPDDVSIIDAEGTLLSGAEEAKT------NTADERAEGLRLRAQRLLEARVGHGN 242 Query: 258 FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSD 317 + E T+ RE +DP+ +V S + A S + ++ VTV N+P D Sbjct: 243 AVVEIALETVTQTESTRERRFDPEGRVAISTDTEERANTSNGT--DNGVTVASNLPD-GD 299 Query: 318 RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSAD 377 + ENT+ + E+ NYE+++ ++R+++A+++N + G Sbjct: 300 AAAAATSASENTETR-ERVNYEVSSTEREVIQQPGAIKRMTVAILINGITTPDASGTPIF 358 Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437 + + L + +V +A G++ RGD +TI ++ F E V+ ++ L+ Sbjct: 359 APRPEEELTALGDLVGSAVGLDETRGDALTIRTLQF-EPSAPTGTLVEAGLLERLAIDTM 417 Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVT--TGLMP 495 T++ +LV + L+ LGL LR + + I P A+T +G++ Sbjct: 418 TLVQSLVLAIVALV---LGLFVLRPILSRPVPLATPQLSAPIRRAPVQDPALTPLSGVIE 474 Query: 496 NDNIAL----DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWAR 551 + +I + D S S L + VS RL +I +E +ILR W Sbjct: 475 DGDIDVAGLSDVSEAPQISLRPRLDGGTDDPVS-----RLRALIGQRQEETVEILRNWLE 529 Query: 552 SEIE 555 +E E Sbjct: 530 AEEE 533 >gi|315286666|gb|EFU46099.1| flagellar M-ring protein FliF [Escherichia coli MS 110-3] Length = 510 Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 114/398 (28%), Positives = 188/398 (47%), Gaps = 38/398 (9%) Query: 43 VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL 102 N P Y L+ L D I L++ NI +R S+ +I VP+ V + R+ LA QGL Sbjct: 1 ANPPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGL 60 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162 P + G+EL D+ FG++ F +++ RALEGE++RTI++I + ARVH+ MP Sbjct: 61 PKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPS 118 Query: 163 SFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-A 219 F + P+ASV + + + AI HLV++AV L G+VT++D G LLT + Sbjct: 119 LFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQS 178 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 N R++ L ++ I+ I L+ +G N + V A+L+ +++ E Y Sbjct: 179 NTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYR 238 Query: 280 PDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ- 335 P+ + S+ SE S P N P ++ P+ N + +++Q Sbjct: 239 PNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPAN-NAPISTPPANQNNRQQQA 297 Query: 336 ----------------SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQG 379 SNYE++ T + ++RLS+AVVVN L + G Sbjct: 298 STTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPD--------G 349 Query: 380 KI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 K + + +I + A G + +RGD++ + + F Sbjct: 350 KPLPLSNEQMKQIEALTREAMGFSEKRGDSLNVVNSPF 387 >gi|300899195|ref|ZP_07117471.1| flagellar M-ring protein FliF [Escherichia coli MS 198-1] gi|300357176|gb|EFJ73046.1| flagellar M-ring protein FliF [Escherichia coli MS 198-1] Length = 511 Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 114/398 (28%), Positives = 188/398 (47%), Gaps = 38/398 (9%) Query: 43 VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL 102 N P Y L+ L D I L++ NI +R S+ +I VP+ V + R+ LA QGL Sbjct: 2 ANPPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGL 61 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162 P + G+EL D+ FG++ F +++ RALEGE++RTI++I + ARVH+ MP Sbjct: 62 PKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPS 119 Query: 163 SFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-A 219 F + P+ASV + + + AI HLV++AV L G+VT++D G LLT + Sbjct: 120 LFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQS 179 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 N R++ L ++ I+ I L+ +G N + V A+L+ +++ E Y Sbjct: 180 NTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYR 239 Query: 280 PDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ- 335 P+ + S+ SE S P N P ++ P+ N + +++Q Sbjct: 240 PNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPAN-NAPISTPPANQNNRQQQA 298 Query: 336 ----------------SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQG 379 SNYE++ T + ++RLS+AVVVN L + G Sbjct: 299 STTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPD--------G 350 Query: 380 KI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 K + + +I + A G + +RGD++ + + F Sbjct: 351 KPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 388 >gi|268678860|ref|YP_003303291.1| flagellar M-ring protein FliF [Sulfurospirillum deleyianum DSM 6946] gi|268616891|gb|ACZ11256.1| flagellar M-ring protein FliF [Sulfurospirillum deleyianum DSM 6946] Length = 574 Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 137/458 (29%), Positives = 226/458 (49%), Gaps = 51/458 (11%) Query: 28 VILVPIMLFMAARFFVNSPH-----YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 V+L+ ++F+ + N+ Y L+ K D I L + + +++ D G+ Sbjct: 30 VVLIGFLVFLM--LYKNTSSSSMSGYTILFEKTTAGDSALIIQQLEKDKVPYKVLDEGT- 86 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I+VP+ MV K RI +AA G+P +S G+E+FDK FG T F Q+I +RALEGE+ART Sbjct: 87 IAVPNDMVHKQRIAIAALGIPKNS-KVGFEIFDK-TEFGATDFEQKIKYIRALEGELART 144 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVP 200 I+S+ I A VHI +P F + TAS++ IR K IR+LVAA++ Sbjct: 145 IESLGPIANASVHIAIPKESVFAQKQVPATASIVLNIRQGMALSVKQIVGIRNLVAASIA 204 Query: 201 NLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFL-GVD 256 NL +V++++ G+ L +N + ++ + + +H IE I LA + GVD Sbjct: 205 NLPAENVSIVNQDGEPLGDEESNLFQGELVKSQIRYKKEFEHNIEQKIINVLAPVIGGVD 264 Query: 257 NFRSAVVAELNMDTQQIREIVYDPDS--KVERSIRLSKDAQRSETSQPESAVTVEQNMPH 314 + V + + Q VYDP+S + E+S+ ++ E +P+ V + + Sbjct: 265 KVNAKVTIDFDFSQQDYVSEVYDPNSVPRSEQSVE-----EKREGKEPQDVGGVPGAISN 319 Query: 315 VSDRKVPLPRSLENTDKKE------EQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368 + P+ + LE+T K E +NYEI+ K + + + K++RL+ AVVV+ Sbjct: 320 IG----PV-QGLESTKKGETYQKSSTTTNYEISKKVVNSKDEFAKIKRLTAAVVVDG--- 371 Query: 369 TEVLGRSADQGKIDSY---------LAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 T G AD K + + I +V G N+ RGD +T+++++F L Sbjct: 372 TYKYGLDADGNKKNELEYFPLSKEQMDAIRDVVRQTVGYNATRGDEVTVSNLEF--KPLS 429 Query: 420 NSGT--VQVSFMDILSRHFATVINALVF-LVGTLLVTF 454 + GT SFM+ + + + L + LV LL F Sbjct: 430 SDGTRVPPKSFMEEVLSYLIKLTPLLKYILVAGLLFIF 467 >gi|163732487|ref|ZP_02139932.1| flagellar M-ring protein FliF, putative [Roseobacter litoralis Och 149] gi|161393847|gb|EDQ18171.1| flagellar M-ring protein FliF, putative [Roseobacter litoralis Och 149] Length = 504 Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 135/430 (31%), Positives = 214/430 (49%), Gaps = 31/430 (7%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 +P+ LY LE + AL + F + G SI V SS + R+ LA++G Sbjct: 1 MATAPNMTLLYAGLENGAAGDVVTALEQRGAVFEV--RGGSIFVDSSQRDELRMTLASEG 58 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP++S+ GYEL D ++ FG TS M + RA EGE+ARTI S I ARVHI Sbjct: 59 LPANSTR-GYELLDTLSGFGTTSQMFDAAYWRAKEGELARTIVSSPHIAMARVHIASTGS 117 Query: 162 GSFRKIGARPTASVMIR----AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F++ G P AS+ + AI P + +AIR LV++AV L DV V+D+ G L+ Sbjct: 118 NPFQR-GVTPKASISVTPSGAAITP---QQGKAIRFLVSSAVAGLASEDVAVIDANGALI 173 Query: 218 -TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 A+E+ I G+ + V ++ + + L A +G N V + +++ IRE Sbjct: 174 GNADEVAPTIGGEDKADV------LKARVQRLLEARVGFGNSVVEVSVDTVTESESIRER 227 Query: 277 VYDPDSKVERSIRLSKDAQRSETSQPESA---VTVEQNMPHVSDRKVPLPRSLENTDKKE 333 +DP+S+V +S D + TS E+ VTV N+P D S +N + + Sbjct: 228 TFDPESRV----AISTDTEERNTSSSEAGGGDVTVASNLPD-EDGAGGENSSSQNNETR- 281 Query: 334 EQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVS 393 E+ NYE++ + ++R+++AV+VN+ LT+ G + ++ L + +V+ Sbjct: 282 ERVNYEVSETEREVLREPGAIKRVTVAVLVNEMTLTDEAGEQTVAPRDENELEALRDLVA 341 Query: 394 AATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVT 453 +A G + RGD ITI SM L GT + ++S V++A+ + L+ Sbjct: 342 SAVGFDEARGDIITIKSMGLQSVPL--QGT--AAGTSLMSNFNIDVMSAVQMAILALVTL 397 Query: 454 FLGLHALRRL 463 LGL +R L Sbjct: 398 ILGLFVVRPL 407 >gi|89899361|ref|YP_521832.1| flagellar M-ring protein FliF [Rhodoferax ferrireducens T118] gi|89344098|gb|ABD68301.1| flagellar M-ring protein FliF [Rhodoferax ferrireducens T118] Length = 588 Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 122/462 (26%), Positives = 209/462 (45%), Gaps = 48/462 (10%) Query: 22 ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81 +++ ++ ++ +M+ A + V LY L D I L+ N+ ++ +D G Sbjct: 60 LVVFVAIGIIGLMMGRQAEWRV-------LYANLADKDGGAIVAQLTTMNVPYKYADGGG 112 Query: 82 SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 +I VP+ V R+ LA+QGLP + +G+E D N FG+T F + + R LEGE+ R Sbjct: 113 AILVPADKVYDTRLRLASQGLPKGAV-AGFETMD-ANRFGMTQFQERLAFQRGLEGELTR 170 Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAV 199 +IQ++S + +ARVH+ +P+ F + +P+ASV++ A+ I HLV+++V Sbjct: 171 SIQALSSVQSARVHLALPNQNGFFREQQKPSASVLVSLNAGRTLDRAQLAGIVHLVSSSV 230 Query: 200 PNLDMGDVTVLDSTGKLLTANE----MERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255 P ++ V+VLD +GKLL+ + L VQ ++ I L +G Sbjct: 231 PEMNASAVSVLDDSGKLLSTPPEGADGAGGGDAQQLQYVQQLEQLYSRRILDILEPVVGR 290 Query: 256 DNFRSAVVAELNM----DTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311 N R+ V AEL+ T + + PDS RS ++S+ + S S P S V Sbjct: 291 GNARAQVTAELDFSQTESTSESHKPNQTPDSSAIRSQQVSESSNGSGISGPPSGV----- 345 Query: 312 MPHVSDRKVPLPRSLE------------------NTDKKEEQSNYEINTKSIATTHDNYK 353 P + K P P S ++E NYE++ Sbjct: 346 -PGATSNKPPGPSSAPINGAPQTLTAAGAGASAGAGGRRESIINYEVDKTVKVVRGGTGI 404 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 ++R+S AVVVN +T+ G++ + ++ +V G N RGD++ + + F Sbjct: 405 VKRISAAVVVNHQSVTDAKGKTTTTPLSAQQIEQMTALVRETVGFNKERGDSVNLMNAPF 464 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455 ++ V + F + +L + +GTLL L Sbjct: 465 TTERVV---PVDLPFWK--QSEIQDLARSLAWPLGTLLFGAL 501 >gi|291085209|ref|ZP_06352408.2| flagellar M-ring protein FliF [Citrobacter youngae ATCC 29220] gi|291072341|gb|EFE10450.1| flagellar M-ring protein FliF [Citrobacter youngae ATCC 29220] Length = 557 Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 116/406 (28%), Positives = 195/406 (48%), Gaps = 48/406 (11%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ N+ +R ++ +I VP+ V + R+ LA Q Sbjct: 44 LWAKAPDYRTLFSNLSDQDGGAIVTQLTQMNVPYRFTEGSGAIEVPADKVHELRLRLAQQ 103 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + ARVH+ +P Sbjct: 104 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKRARVHLALPK 161 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + P+ASV + RA++ A+ HLV++AV L G+VT++D G Sbjct: 162 PSLFVREQKAPSASVTVNLEPGRALDEG---QISAVTHLVSSAVAGLPPGNVTLVDQAGH 218 Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT +N R++ L ++ I+ I L+ +G N + V A+L+ ++ Sbjct: 219 LLTQSNTSSRDLNDAQLKYASDVEGRIQRRIESILSPIVGNGNVHAQVTAQLDFANKEQT 278 Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQPESAVTVEQNMPHVSDRKV 320 E Y P+ +++ S+ SE ++QP A T P + + Sbjct: 279 EEQYRPNGDDSQAVLRSRQLNVSEQIGSGAPGGVPGALSNQPAPANTAPIATPPANQQNA 338 Query: 321 PL-----------PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369 PRS + + E SNYE++ T + ++RLS+AVVVN L Sbjct: 339 QTTQTTNNSSNAGPRSTQ----RNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLP 394 Query: 370 E--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 + L +A+Q K +I + A G + +RGDT+ + + F Sbjct: 395 DGKPLPLTAEQMK------QIEDLTREAMGFSDKRGDTLNVVNSPF 434 >gi|222033677|emb|CAP76418.1| flagellar M-ring protein [Escherichia coli LF82] Length = 552 Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 117/418 (27%), Positives = 198/418 (47%), Gaps = 40/418 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +M+ + + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGLHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316 + V A+L+ +++ E Y P+ ++ S+ SE S P N P + Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320 Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359 + P+ N + +++Q SNYE++ T + ++RLS+ Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVVVN L + GK + + +I + A G + +RGD++ + + F Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429 >gi|289627784|ref|ZP_06460738.1| flagellar MS-ring protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651625|ref|ZP_06482968.1| flagellar MS-ring protein [Pseudomonas syringae pv. aesculi str. 2250] gi|298487835|ref|ZP_07005875.1| Flagellar M-ring protein fliF [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157560|gb|EFH98640.1| Flagellar M-ring protein fliF [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330866444|gb|EGH01153.1| flagellar MS-ring protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330986489|gb|EGH84592.1| flagellar MS-ring protein [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011063|gb|EGH91119.1| flagellar MS-ring protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 594 Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 152/603 (25%), Positives = 258/603 (42%), Gaps = 98/603 (16%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y LY L D +I L Sbjct: 24 LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + ANI++ + N ++ V S V +ARI LA G+ + +N G+E+ DK G + FM+ Sbjct: 84 TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINP 182 R LEGE+ARTI +++ + ARVH+ +P F + +P+ASV++ R++ P Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHE 240 S AI +LVA +VP L +TV+D G LL+ A E + GK + ++ Sbjct: 204 S---QVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGM 260 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 + + L LG D +++ V A ++ + ++PD RS + S + QRS +S Sbjct: 261 LTQRVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQ-SVNEQRSSSS 319 Query: 301 -----------QPESAVTVEQNM----------------------PHVSDRKVPLPRSLE 327 QP T QN + D P Sbjct: 320 STGGVPGALSNQPPGPATAPQNATAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAP 379 Query: 328 NTDKKEEQS--NYEINTKSIATTHDNYKLERLSIAVVVN--------KGRLTEVLGRSAD 377 K QS N+E++ T +L RLS+AVVV+ G +T +AD Sbjct: 380 YPADKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAAD 439 Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF-------LENQLFNSGTVQVSFMD 430 LA ++V A G ++ RGD++++ ++ F L F S Q F D Sbjct: 440 -------LARFTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYS---QPWFWD 489 Query: 431 ILSRHFATVINALVFLVGTL--LVTFLGLHALRRLHNI-DDAKKGEVGGKSILSPPPISS 487 I+ + VI L+ + G L ++T + + L DA+ G +GG Sbjct: 490 IV-KQAVGVIFILILVFGVLRPVLTNITTGKSKELAGFGGDAELGGMGG----------- 537 Query: 488 AVTTGLMPNDNIALDSSNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546 G + ND ++L + S + +++N+ S ++ + R A+++ Sbjct: 538 --LDGELSNDRVSLGGPQSILLPSPTEGYDAQLNAIKS---------LVAEDPGRVAQVV 586 Query: 547 RKW 549 ++W Sbjct: 587 KEW 589 >gi|238794015|ref|ZP_04637633.1| Flagellar M-ring protein [Yersinia intermedia ATCC 29909] gi|238726647|gb|EEQ18183.1| Flagellar M-ring protein [Yersinia intermedia ATCC 29909] Length = 572 Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 140/553 (25%), Positives = 255/553 (46%), Gaps = 75/553 (13%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + SP Y LY L D I L++ NI +R +DNG ++ +P+ V + R+ LA Q Sbjct: 46 LWAKSPDYRVLYSNLNDRDGGDIVTQLTQLNIPYRFADNGGALLIPADKVHETRLRLAQQ 105 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE++RTI ++ ++ RVH+ MP Sbjct: 106 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRTISTLGPVMNVRVHLAMPK 163 Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + PTASV + A+ P AI ++V+++V L G+VTV+D TG+LL Sbjct: 164 PSLFVREQKSPTASVTL-ALQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLL 222 Query: 218 T-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 T ++ R++ L +++ + I LA +G N + V A+++ +++ + Sbjct: 223 TQSDSAGRDLNAAQLKFTNEVENRFQRRIETILAPMVGNGNVHAQVTAQVDFASREQTDE 282 Query: 277 VYDPDSKVERSIRLSKDAQRSE--------------TSQPESAVTVEQNMPH-------- 314 Y P+ ++ S+ SE ++QP + P Sbjct: 283 EYKPNQAADKGAVRSQQVSTSEQLGGTNVGGVPGALSNQPSATPVAPIETPQATPAAGAA 342 Query: 315 ------------VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 + + + + ++ +N+E++ T ++RLS+AVV Sbjct: 343 GATANNANAANRPATTTAAKSTATSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVV 402 Query: 363 VNKG--RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 VN G + + + + DQ LA++ + A G ++ RGDT+ + + F + Sbjct: 403 VNYGSDKAGKPVALTKDQ------LAQVESLTREAMGFSTDRGDTLNVVNTPFSATDDAS 456 Query: 421 SGTV----QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476 T+ Q SF D ++NA +L+ LLV ++ R+L AKK +V Sbjct: 457 GNTLPFWQQQSFFD-------QMLNAGRYLL-ILLVAWI---LWRKLVRPMMAKK-QVAD 504 Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536 K+ S I++ V T + + S +++ +N Q R+++ V Q R+ + + Sbjct: 505 KAAAS---INNIVQTAVASEN---AKQSKEELALRKKN-QQRVSAEVQAQ---RIRELAD 554 Query: 537 INEERFAKILRKW 549 + A ++R+W Sbjct: 555 KDPRVVALVIRQW 567 >gi|46578729|ref|YP_009537.1| flagellar M-ring protein FliF [Desulfovibrio vulgaris str. Hildenborough] gi|46448141|gb|AAS94796.1| flagellar M-ring protein FliF [Desulfovibrio vulgaris str. Hildenborough] gi|311232601|gb|ADP85455.1| flagellar M-ring protein FliF [Desulfovibrio vulgaris RCH1] Length = 538 Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 120/421 (28%), Positives = 201/421 (47%), Gaps = 17/421 (4%) Query: 21 RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80 R+ I+ + LV + +F ++N P Y LY L D NR+ L + +++ ++G Sbjct: 24 RVFIVG-LALVTVGIFFTLILWINRPDYRVLYSNLAGEDANRVVKLLQANKVPYKLENDG 82 Query: 81 SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140 ++ VP+ + RI +A +G G+E+FD + G T F+Q+I RAL+GE+ Sbjct: 83 GTVLVPADKLYDLRIKVAGEG-NLVGQGIGFEIFDDLK-VGQTDFVQKINYQRALQGELI 140 Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI--RAINPSVYKSAEAIRHLVAAA 198 RTI G+ ARVH+V+P F + +P+ASV++ R + +AI +LV A Sbjct: 141 RTISEFPGVETARVHLVIPHRSLFIEEQQKPSASVVVKLREGKKMEAQDVQAIVNLVVMA 200 Query: 199 VPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255 V +D V+V D++GK+L T ++ + + L +Q +E I + L +G Sbjct: 201 VEGMDRNRVSVADTSGKILYYPTEDDSLQGLTTTQLEYKMRLQQNLERRIEELLYPVIGP 260 Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV 315 + V A+++ + IR +YDP+ V RS QRSE S A +E P Sbjct: 261 GKVIAKVNADVDFSQRTIRRELYDPEKTVVRS------EQRSEESTRGRA-NLEAGAPDA 313 Query: 316 SDRKVPLPRSLENTDKKEE--QSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373 + R + S + E +N+EIN + + L RLS+AV+V+ G Sbjct: 314 NFRGDGISGSASTQEGTRETRTTNFEINKEEQNIVANVGDLSRLSVAVIVDGTYEKAADG 373 Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433 + + I ++VS+A G + RGDT+ + S+ F L ++ F+D Sbjct: 374 TYTFVPRNAEEMQRIRQLVSSAVGYDRARGDTVEVNSISFGGPDLPQEASLPQLFLDYAL 433 Query: 434 R 434 R Sbjct: 434 R 434 >gi|309388817|gb|ADO76697.1| flagellar M-ring protein FliF [Halanaerobium praevalens DSM 2228] Length = 512 Score = 150 bits (378), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 117/378 (30%), Positives = 193/378 (51%), Gaps = 30/378 (7%) Query: 45 SPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPS 104 S +Y L+ L SD I L E +D+++ NG++I VP S + + R+ +A+ GLP Sbjct: 47 SSNYQPLFTNLSTSDTAAIVERLDENQVDYKLGGNGNTILVPESEIHRLRLDMASAGLPD 106 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 G+E+FD + FG T F + + RAL GE++R+IQSISGI ARV I P+ F Sbjct: 107 QGV-VGFEIFDS-SDFGTTEFERRVNYYRALGGELSRSIQSISGIEFARVQITPPEESLF 164 Query: 165 RKIGARPTASVMIRAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-- 219 TASV+++ ++ S+E A+++LVA+ V +L + +VT++D+ G LL+ Sbjct: 165 LDEEKSATASVVVK-LSAGYKMSSERVRAVQNLVASGVQDLPLEEVTLVDTNGNLLSKPV 223 Query: 220 -NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 +E R ++ +I + + ++ ++ L LG +NF V A+LN D + Y Sbjct: 224 NSEDGRWSDPQNFAIQKEFESALKNDLRVLLTKVLGPNNFAVQVNAKLNFDQRHSESKTY 283 Query: 279 DP---DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ 335 P DS + RS ++ ++Q E A + N+P S D++ Sbjct: 284 APVIDDSGIIRSQEVNTESQ--ENGINGGAPGTDANIPQYQAEGTGEASSY---DRENTI 338 Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395 +NYEIN + + ++ERLS++V++ DQ + +A+I V AA Sbjct: 339 TNYEINERIEEHIYAPGEVERLSVSVML-------------DQDTDEEKIAQIRNAVGAA 385 Query: 396 TGINSRRGDTITITSMDF 413 G N RGD + I+S+ F Sbjct: 386 IGYNEDRGDVLNISSIAF 403 >gi|209884352|ref|YP_002288208.1| flagellar M-ring protein FliF [Oligotropha carboxidovorans OM5] gi|209872548|gb|ACI92344.1| flagellar M-ring protein FliF [Oligotropha carboxidovorans OM5] Length = 537 Score = 150 bits (378), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 105/375 (28%), Positives = 186/375 (49%), Gaps = 5/375 (1%) Query: 43 VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL 102 V +P LY L D + L I + + ++G+ I VP V + R+ LA GL Sbjct: 37 VTAPQMITLYTDLGYDDAAGVIKELDRQGIPYEMKNDGAIIMVPKDKVTRLRMKLAESGL 96 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162 P S GYE+FDK + G TSF+Q + +RALEGE+ARTI++I I RVH+V+P+ Sbjct: 97 PKGSG-VGYEIFDKSETLGSTSFVQNVNHLRALEGELARTIKAIDRIQGVRVHLVLPERP 155 Query: 163 SFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM 222 F + P+A++++R + AIRHLVA++V L V+++D G+LL Sbjct: 156 LFSREKPEPSAAIVVRVRGALEAQQVRAIRHLVASSVNGLKPQRVSIVDENGQLLADGSG 215 Query: 223 ERNILGKSLSIVQAIQHE--IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP 280 + N +G + + + +E + I + + +G R + A+ + + +DP Sbjct: 216 DANGMGDVGADERRVAYENRLRKQIESIVTSVVGGGRARVQLSADFDYNKVTETSDKFDP 275 Query: 281 DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEI 340 + +V RS + +++ + ++ VTV MP + ++ + K EE +NYEI Sbjct: 276 EGRVLRSSQ-TREESSATSNGLNGQVTVNNEMPG-NQQQNAANAGKDQAKKSEEINNYEI 333 Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400 + + + +++R+S+AV+V+ G + L I +V +A G + Sbjct: 334 SRTTKTEVTEAGRVQRMSVAVLVDGVYSRNEKGDQVYAPRSQEDLERIATLVRSAIGFDK 393 Query: 401 RRGDTITITSMDFLE 415 RGD + + ++ F + Sbjct: 394 ARGDQVEVVNLRFAD 408 >gi|183598654|ref|ZP_02960147.1| hypothetical protein PROSTU_02060 [Providencia stuartii ATCC 25827] gi|188020839|gb|EDU58879.1| hypothetical protein PROSTU_02060 [Providencia stuartii ATCC 25827] Length = 562 Score = 150 bits (378), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 117/414 (28%), Positives = 208/414 (50%), Gaps = 51/414 (12%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 ++ SP Y L L D I L++ N+ ++I+DNGS+I VP+ V + R+ LA G Sbjct: 47 WLRSPDYRVLLSNLSAKDGGDIVSQLTQMNVPYQIADNGSAILVPAEKVHELRLKLAQSG 106 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP N+G+EL DK FG++ F +++ RALEGE++RTI+S+S + ARVH+ +P Sbjct: 107 LPKGG-NTGFELLDK-EQFGISQFSEQVNYQRALEGELSRTIESLSPVQNARVHLAIPKP 164 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + PTASV + + + + AI H+V+++V L +VT++D TG+LLT Sbjct: 165 TLFVREQKLPTASVTVGLLPGRMLDEGQITAIVHMVSSSVSGLTAANVTIVDQTGRLLTN 224 Query: 220 NE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 N+ +++ + + + ++ ++ I ++ +G N + V A+++ + Y Sbjct: 225 NDNSQQSANNAQIKMTKEMESHLKQRIEDIISPLVGRANVHAQVTAQMDFSKVEQTSEEY 284 Query: 279 DPDSKVER-SIRLSKDAQRSE-------------TSQPESAVTVEQNMPHVSDRKVPLPR 324 P+ ++R +++Q S+ ++QP SA + P +D K Sbjct: 285 KPNQTPNSAAVRSRQNSQSSQNNTSGVGGVPGALSNQPPSAPSA----PISTDNKG--AN 338 Query: 325 SLENT--------DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA 376 S +N+ + +E +NYE++ K T ++RLS+AV++N L + Sbjct: 339 SAQNSPSNNGSSLSQSDETTNYEVDRKISHTQRQIGVIDRLSVAVIIN------YLPQDG 392 Query: 377 DQGKID------SYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424 + G + +I + A G +S RGD+++IT N LF + TV Sbjct: 393 EDGTQQMKPLSPEMMQQIESLTREAMGYSSTRGDSLSIT------NSLFTNDTV 440 >gi|120603707|ref|YP_968107.1| flagellar M-ring protein FliF [Desulfovibrio vulgaris DP4] gi|120563936|gb|ABM29680.1| flagellar M-ring protein FliF [Desulfovibrio vulgaris DP4] Length = 538 Score = 150 bits (378), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 123/428 (28%), Positives = 207/428 (48%), Gaps = 31/428 (7%) Query: 21 RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80 R+ I+ + LV + +F ++N P Y LY L D NR+ L + +++ ++G Sbjct: 24 RVFIVG-LALVTVGIFFTLILWINRPDYRVLYSNLAGEDANRVVKLLQANKVPYKLENDG 82 Query: 81 SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140 ++ VP+ + RI +A +G G+E+FD + G T F+Q+I RAL+GE+ Sbjct: 83 GTVLVPADKLYDLRIKVAGEG-NLVGQGIGFEIFDDLK-VGQTDFVQKINYQRALQGELI 140 Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI--RAINPSVYKSAEAIRHLVAAA 198 RTI G+ ARVH+V+P F + +P+ASV++ R + +AI +LV A Sbjct: 141 RTISEFPGVETARVHLVIPHRSLFIEEQQKPSASVVVKLREGKKMEAQDVQAIVNLVVMA 200 Query: 199 VPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255 V +D V+V D++GK+L T ++ + + L +Q +E I + L +G Sbjct: 201 VEGMDRNRVSVADTSGKILYYPTEDDSLQGLTTTQLEYKMRLQQNLERRIEELLYPVIGP 260 Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV 315 + V A+++ + IR +YDP+ V RS QRSE S A +E P Sbjct: 261 GKVIAKVNADVDFSQRTIRRELYDPEKTVVRS------EQRSEESTRGRA-NLEAGAPDA 313 Query: 316 SDRKVPLPRSLENTDKKEE--QSNYEINTKSIATTHDNYKLERLSIAVVVN-------KG 366 + R + S + E +N+EIN + + L RLS+AV+V+ G Sbjct: 314 NFRGDGISGSASTQEGTRETRTTNFEINKEEQNIVANVGDLSRLSVAVIVDGTYEKAADG 373 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 T + R+A++ + I ++VS+A G + RGDT+ + S+ F L ++ Sbjct: 374 TYT-FVPRNAEE------MQRIRQLVSSAVGYDRARGDTVEVNSISFGGPDLPQEASLPQ 426 Query: 427 SFMDILSR 434 F+D R Sbjct: 427 LFLDYALR 434 >gi|239909140|ref|YP_002955882.1| flagellar M-ring protein [Desulfovibrio magneticus RS-1] gi|239799007|dbj|BAH77996.1| flagellar M-ring protein [Desulfovibrio magneticus RS-1] Length = 547 Score = 150 bits (378), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 121/433 (27%), Positives = 213/433 (49%), Gaps = 38/433 (8%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++L+Q++ + ++ R ++LA + + F+ F +N P LY + D +R+ Sbjct: 9 FEKLIQYWSNRSAAQR---IMLAGLAASLVAAFVVMLFILNQPDMRVLYTNMPQEDASRV 65 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L + + + DNG+++ VP+ V + R+ +A +G+ G+ELFD++ G T Sbjct: 66 VELLKASKTPYELRDNGATVLVPAEAVYEQRLKVAGEGV-MRGQGIGFELFDELK-VGQT 123 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAIN 181 F+Q I RAL+GE+ARTI + ARVH+V+P F + + TASV+ +R Sbjct: 124 DFVQRINYTRALQGELARTISEFPQVEKARVHLVLPHKSLFIEEQKKATASVVLTLRKGQ 183 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ---AIQ 238 K + I +LVA +V L +TV D+ G+ L + + G + + + + Sbjct: 184 KLDAKQLQGIVNLVAMSVEGLTPDHITVTDTAGQSLYQPRGDGGLDGLTTTQFEYKNTFE 243 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 +E + + L LG + V AEL+ + IR+ +YDP++ V RS + S+++ Sbjct: 244 SNLENRLEQILTPILGPGRSLAKVNAELDFAQRTIRKELYDPNATVVRSEQKSEESTSGT 303 Query: 299 TSQPESAVTVEQNMPHVSDRKVP----------LPRSLENTDKKEEQSNYEINTKSIATT 348 + S VT P + VP S + ++++ + +NYEIN + Sbjct: 304 AAVDASGVTT---TPRGGGQAVPNTNFRGEGYSGTESTQKSNRENKTTNYEINKEEQNVV 360 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLG--------RSADQGKIDSYLAEINKIVSAATGINS 400 L+R SIAV+V+ G +V G RSA++ L I +IV+ A G+++ Sbjct: 361 TPVGDLKRQSIAVIVD-GTYEKVEGTKNWKFVPRSAEE------LERIKQIVARAAGLDA 413 Query: 401 RRGDTITITSMDF 413 RGD I ++S +F Sbjct: 414 ARGDEIQVSSFEF 426 >gi|123442764|ref|YP_001006741.1| flagellar MS-ring protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089725|emb|CAL12578.1| flagellar M-ring protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 566 Score = 150 bits (378), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 133/543 (24%), Positives = 244/543 (44%), Gaps = 61/543 (11%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + SP Y LY L D I L++ NI +R +DNG ++ +P+ V + R+ LA Q Sbjct: 46 LWAKSPDYRVLYSNLNDRDGGDIVTQLTQLNIPYRFADNGGALLIPADKVHETRLRLAQQ 105 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI ++ ++ RVH+ MP Sbjct: 106 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIGTLGPVLNVRVHLAMPK 163 Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + PTASV + A+ P AI ++V+++V L +VTV+D TG+LL Sbjct: 164 PSLFVREQKSPTASVTL-ALQPGRALDDGQINAIVYMVSSSVAGLPPANVTVVDQTGRLL 222 Query: 218 T-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 T ++ R++ L +++ + I LA +G N + V A+++ +++ + Sbjct: 223 TQSDSAGRDLNAAQLKFTNEVENRFQRRIETILAPMVGSGNVHAQVTAQVDFASREQTDE 282 Query: 277 VYDPDSKVERSIRLSKDAQRSE--------------TSQPESAVTVEQNMPHVSDRKVPL 322 Y P+ + S+ SE ++QP + +P + Sbjct: 283 EYKPNQAANQGAVRSQQVSTSEQLGGTNVGGVPGALSNQPSATPVAPIEIPQATPAAGAG 342 Query: 323 PR--------------SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG-- 366 + + + ++ +N+E++ T ++RLS+AVVVN G Sbjct: 343 AAANAANRPATAARQTATSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVNYGSD 402 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 + + + S DQ LA++ + A G ++ RGDT+ + + F N ++ + Sbjct: 403 KAGKPIALSKDQ------LAQVESLTREAMGFSTVRGDTLNVVNTPF--NATDDASGSNL 454 Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486 F S F ++N +L+ L+ L +R L I ++ + S+ + + Sbjct: 455 PFWQQPS-FFDQLLNIGRYLLILLVAWILWRKLVRPL--IAKKQEADKAAASVNNIVQAA 511 Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546 T + +AL N Q R+++ V Q R+ + + + A ++ Sbjct: 512 QTTETAKQTKEELALRKKN----------QQRVSAEVQAQ---RIRELADKDPRIVALVI 558 Query: 547 RKW 549 R+W Sbjct: 559 RQW 561 >gi|56695122|ref|YP_165469.1| flagellar MS-ring protein [Ruegeria pomeroyi DSS-3] gi|56676859|gb|AAV93525.1| flagellar M-ring protein FliF [Ruegeria pomeroyi DSS-3] Length = 534 Score = 150 bits (378), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 160/555 (28%), Positives = 249/555 (44%), Gaps = 59/555 (10%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 SL + + I+ LV + + SP+ LY LE + +L + + + Sbjct: 10 SLDKKKQFIVIGAALVVFLGVLGLTRMAGSPNMQLLYAGLESGSAGEVVRSLEQQGVPYE 69 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135 + G SI VP++ + R+ LA++GLP++ GYEL D ++ FG TS M + RA Sbjct: 70 V--RGGSIYVPAARRDELRLTLASEGLPANGGR-GYELLDSLSGFGTTSQMFDAAYWRAK 126 Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHL 194 EGE+ARTI + + ARVHI F++ PTASV + V + A AIR+L Sbjct: 127 EGELARTIVASPHVAQARVHIANSSSNPFQR-SIEPTASVSVVPSGSEVTPAQANAIRYL 185 Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLG 254 VA+AV + VTV+DS G N++G + + + + + + + Sbjct: 186 VASAVSGMVAEGVTVVDSNG----------NVIGTPETPTSSTSEDRAQQMRERVLRLVE 235 Query: 255 VDNFRSAVVAELNMD----TQQIREIVYDPDSKVERSIRLSK--DAQRSETSQPESAVTV 308 R + E+++D T+ IRE +DP+ +V S + + DA +++T+ VTV Sbjct: 236 ARVGRGNAIVEVSLDTVTETESIRERRFDPNGRVAISTDVEERSDASKNQTTD----VTV 291 Query: 309 EQNMPH----VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 N+P V D S +T E+ NYE++ ++RLS+AV+VN Sbjct: 292 ASNLPDGDGAVGD------ESNSSTSATRERVNYEVSETETEILRTPGAIKRLSVAVLVN 345 Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF--LENQ--LFN 420 G S + + LA + ++V +A G N RGD IT+ SM+ LE Q L + Sbjct: 346 GLPGAAQDGSSQFTPRPEEELAALRELVESAVGFNQDRGDVITLKSMELPNLEPQGTLAS 405 Query: 421 SGTVQVSFMDILSR-HFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK-- 477 S +Q D++S AT+ ALV LV LGL +R + K V Sbjct: 406 SSMLQGLTFDLMSLIQMATL--ALVTLV-------LGLFVVRPILT-----KPAVSAPLL 451 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL---RLLHM 534 ++ PP S A + G I S Q+ + Q + S RL M Sbjct: 452 AVAPPPNQSGAQSAGPALTGEIDDGSPRQNQLPGAATQQRGTVPALVGSSGTPVDRLRAM 511 Query: 535 IEINEERFAKILRKW 549 I +E +ILR W Sbjct: 512 IGDKQEETVEILRSW 526 >gi|71734724|ref|YP_275541.1| flagellar MS-ring protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555277|gb|AAZ34488.1| flagellar M-ring protein FliF [Pseudomonas syringae pv. phaseolicola 1448A] Length = 594 Score = 150 bits (378), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 152/603 (25%), Positives = 258/603 (42%), Gaps = 98/603 (16%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y LY L D +I L Sbjct: 24 LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + ANI++ + N ++ V S V +ARI LA G+ + +N G+E+ DK G + FM+ Sbjct: 84 TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINP 182 R LEGE+ARTI +++ + ARVH+ +P F + +P+ASV++ R++ P Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHE 240 S AI +LVA +VP L +TV+D G LL+ A E + GK + ++ Sbjct: 204 S---QVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGM 260 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 + + L LG D +++ V A ++ + ++PD RS + S + QRS +S Sbjct: 261 LTQRVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQ-SVNEQRSSSS 319 Query: 301 -----------QPESAVTVEQNM----------------------PHVSDRKVPLPRSLE 327 QP T QN + D P Sbjct: 320 STGGVPGALSNQPPGPATAPQNATAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAP 379 Query: 328 NTDKKEEQS--NYEINTKSIATTHDNYKLERLSIAVVVN--------KGRLTEVLGRSAD 377 K QS N+E++ T +L RLS+AVVV+ G +T +AD Sbjct: 380 YPADKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAAD 439 Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF-------LENQLFNSGTVQVSFMD 430 LA ++V A G ++ RGD++++ ++ F L F S Q F D Sbjct: 440 -------LARFTRLVQDAVGFDASRGDSVSVINVPFSIERAEVLPEASFYS---QPWFWD 489 Query: 431 ILSRHFATVINALVFLVGTL--LVTFLGLHALRRLHNI-DDAKKGEVGGKSILSPPPISS 487 I+ + VI L+ + G L ++T + + L DA+ G +GG Sbjct: 490 IV-KQAVGVIFILILVFGVLRPVLTNITTGKSKELAGFGGDAELGGMGG----------- 537 Query: 488 AVTTGLMPNDNIALDSSNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546 G + ND ++L + S + +++N+ S ++ + R A+++ Sbjct: 538 --LDGELSNDRVSLGGPQSILLPSPTEGYDAQLNAIKS---------LVAEDPGRVAQVV 586 Query: 547 RKW 549 ++W Sbjct: 587 KEW 589 >gi|51596039|ref|YP_070230.1| flagellar MS-ring protein [Yersinia pseudotuberculosis IP 32953] gi|51589321|emb|CAH20942.1| flagellar M-ring protein [Yersinia pseudotuberculosis IP 32953] Length = 570 Score = 150 bits (378), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 141/551 (25%), Positives = 256/551 (46%), Gaps = 73/551 (13%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + SP Y LY L D I L++ NI +R +DNG ++ +P+ V + R+ LA Q Sbjct: 46 LWAKSPDYRVLYSNLSDRDGGDIVTQLTQLNIPYRFADNGGALLIPAEKVHETRLRLAQQ 105 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F ++I RALEGE++RTI ++ ++ RVH+ MP Sbjct: 106 GLPKGGA-VGFELLDQ-EKFGISQFSEQINYQRALEGELSRTIGTLGPVLNVRVHLAMPK 163 Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + PTASV + A+ P AI ++V+++V L G+VTV+D TG+LL Sbjct: 164 PSLFVREQKSPTASVTL-ALQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLL 222 Query: 218 T-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 T ++ R++ L +++ + I LA +G N + V A+++ +++ + Sbjct: 223 TQSDSAGRDLNASQLKFTSEVENRYQRRIENILAPMVGNGNVHAQVTAQVDFASREQTDE 282 Query: 277 VYDPDSKVE----RSIRLSKDAQRSETS--QPESAVTVEQNMPHVSDRKVPLPRSL---- 326 Y P+ RS ++S Q T+ A++ + + ++ ++P P Sbjct: 283 EYKPNQAANQGAVRSQQVSTSEQLGGTNVGGVPGALSNQPPVAPIAPIEIPQPAGAAANN 342 Query: 327 ----------------------ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 + + ++ +N+E++ T ++RLS+AVVVN Sbjct: 343 AAPANAATTANANTTATAAKASSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVN 402 Query: 365 --KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 + + + S DQ LA++ + A G ++ RGDT+ + + F + Sbjct: 403 YTSDKAGKPIALSKDQ------LAQVESLTREAMGFSTVRGDTLNVVNTPFTASDDTRGS 456 Query: 423 TV----QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 ++ Q SF D L +NA +L+ L+ L LR + AKK +V K+ Sbjct: 457 SLPFWQQQSFFDQL-------LNAGRYLLILLVAWILWRKLLRPML----AKK-QVADKA 504 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 S +++ V T + S +++ +N Q R+++ V Q R+ + + + Sbjct: 505 AAS---VNNIVQTAQAAE---TVKQSKEELALRKKN-QQRVSAEVQAQ---RIRELADKD 554 Query: 539 EERFAKILRKW 549 A ++R+W Sbjct: 555 PRVVALVIRQW 565 >gi|22126359|ref|NP_669782.1| flagellar MS-ring protein [Yersinia pestis KIM 10] gi|45441380|ref|NP_992919.1| flagellar MS-ring protein [Yersinia pestis biovar Microtus str. 91001] gi|108807202|ref|YP_651118.1| flagellar MS-ring protein [Yersinia pestis Antiqua] gi|108812454|ref|YP_648221.1| flagellar MS-ring protein [Yersinia pestis Nepal516] gi|145598582|ref|YP_001162658.1| flagellar MS-ring protein [Yersinia pestis Pestoides F] gi|149366222|ref|ZP_01888257.1| flagellar M-ring protein [Yersinia pestis CA88-4125] gi|153947408|ref|YP_001401259.1| flagellar MS-ring protein [Yersinia pseudotuberculosis IP 31758] gi|162421303|ref|YP_001606485.1| flagellar MS-ring protein [Yersinia pestis Angola] gi|165926013|ref|ZP_02221845.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis str. F1991016] gi|165938662|ref|ZP_02227217.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis str. IP275] gi|166010885|ref|ZP_02231783.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str. E1979001] gi|166210437|ref|ZP_02236472.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str. B42003004] gi|167401031|ref|ZP_02306534.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420343|ref|ZP_02312096.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425776|ref|ZP_02317529.1| flagellar M-ring protein FliF [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468921|ref|ZP_02333625.1| flagellar M-ring protein FliF [Yersinia pestis FV-1] gi|218928951|ref|YP_002346826.1| flagellar MS-ring protein [Yersinia pestis CO92] gi|229897213|ref|ZP_04512369.1| flagellar M-ring protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229897940|ref|ZP_04513091.1| flagellar M-ring protein [Yersinia pestis biovar Orientalis str. India 195] gi|229902829|ref|ZP_04517946.1| flagellar M-ring protein [Yersinia pestis Nepal516] gi|270486615|ref|ZP_06203689.1| flagellar M-ring protein FliF [Yersinia pestis KIM D27] gi|294504003|ref|YP_003568065.1| flagellar M-ring protein [Yersinia pestis Z176003] gi|21959343|gb|AAM86033.1|AE013851_5 basal-body MS (membrane and supramembrane)-ring and collar protein [Yersinia pestis KIM 10] gi|45436240|gb|AAS61796.1| flagellar M-ring protein [Yersinia pestis biovar Microtus str. 91001] gi|108776102|gb|ABG18621.1| flagellar M-ring protein [Yersinia pestis Nepal516] gi|108779115|gb|ABG13173.1| flagellar M-ring protein [Yersinia pestis Antiqua] gi|115347562|emb|CAL20471.1| flagellar M-ring protein [Yersinia pestis CO92] gi|145210278|gb|ABP39685.1| flagellar M-ring protein [Yersinia pestis Pestoides F] gi|149292635|gb|EDM42709.1| flagellar M-ring protein [Yersinia pestis CA88-4125] gi|152958903|gb|ABS46364.1| flagellar M-ring protein FliF [Yersinia pseudotuberculosis IP 31758] gi|162354118|gb|ABX88066.1| flagellar M-ring protein FliF [Yersinia pestis Angola] gi|165913276|gb|EDR31898.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis str. IP275] gi|165922217|gb|EDR39394.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis str. F1991016] gi|165990229|gb|EDR42530.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str. E1979001] gi|166207617|gb|EDR52097.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str. B42003004] gi|166962038|gb|EDR58059.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049420|gb|EDR60828.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055175|gb|EDR64972.1| flagellar M-ring protein FliF [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229680276|gb|EEO76375.1| flagellar M-ring protein [Yersinia pestis Nepal516] gi|229688981|gb|EEO81046.1| flagellar M-ring protein [Yersinia pestis biovar Orientalis str. India 195] gi|229693550|gb|EEO83599.1| flagellar M-ring protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|262361812|gb|ACY58533.1| flagellar M-ring protein [Yersinia pestis D106004] gi|270335119|gb|EFA45896.1| flagellar M-ring protein FliF [Yersinia pestis KIM D27] gi|294354462|gb|ADE64803.1| flagellar M-ring protein [Yersinia pestis Z176003] gi|320015431|gb|ADV99002.1| flagellar M-ring protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 570 Score = 150 bits (378), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 141/551 (25%), Positives = 256/551 (46%), Gaps = 73/551 (13%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + SP Y LY L D I L++ NI +R +DNG ++ +P+ V + R+ LA Q Sbjct: 46 LWAKSPDYRVLYSNLSDRDGGDIVTQLTQLNIPYRFADNGGALLIPAEKVHETRLRLAQQ 105 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F ++I RALEGE++RTI ++ ++ RVH+ MP Sbjct: 106 GLPKGGA-VGFELLDQ-EKFGISQFSEQINYQRALEGELSRTIGTLGPVLNVRVHLAMPK 163 Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + PTASV + A+ P AI ++V+++V L G+VTV+D TG+LL Sbjct: 164 PSLFVREQKSPTASVTL-ALQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLL 222 Query: 218 T-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 T ++ R++ L +++ + I LA +G N + V A+++ +++ + Sbjct: 223 TQSDSAGRDLNASQLKFTSEVENRYQRRIENILAPMVGNGNVHAQVTAQVDFASREQTDE 282 Query: 277 VYDPDSKVE----RSIRLSKDAQRSETS--QPESAVTVEQNMPHVSDRKVPLPRSL---- 326 Y P+ RS ++S Q T+ A++ + + ++ ++P P Sbjct: 283 EYKPNQAANQGAVRSQQVSTSEQLGGTNVGGVPGALSNQPPVAPIAPIEIPQPAGAAANN 342 Query: 327 ----------------------ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 + + ++ +N+E++ T ++RLS+AVVVN Sbjct: 343 AAPANTAATANANTTATAAKASSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVN 402 Query: 365 --KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 + + + S DQ LA++ + A G ++ RGDT+ + + F + Sbjct: 403 YTSDKAGKPIALSKDQ------LAQVESLTREAMGFSTVRGDTLNVVNTPFTASDDTRGS 456 Query: 423 TV----QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 ++ Q SF D L +NA +L+ L+ L LR + AKK +V K+ Sbjct: 457 SLPFWQQQSFFDQL-------LNAGRYLLILLVAWILWRKLLRPML----AKK-QVADKA 504 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 S +++ V T + S +++ +N Q R+++ V Q R+ + + + Sbjct: 505 AAS---VNNIVQTAQAAE---TVKQSKEELALRKKN-QQRVSAEVQAQ---RIRELADKD 554 Query: 539 EERFAKILRKW 549 A ++R+W Sbjct: 555 PRVVALVIRQW 565 >gi|74317618|ref|YP_315358.1| flagellar MS-ring protein [Thiobacillus denitrificans ATCC 25259] gi|74057113|gb|AAZ97553.1| flagellar M-ring protein FliF [Thiobacillus denitrificans ATCC 25259] Length = 548 Score = 149 bits (377), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 123/439 (28%), Positives = 209/439 (47%), Gaps = 31/439 (7%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + +++F + T+ GR +L+L V + A + P Y L+ D Sbjct: 7 MVVPGNVMEFTR--TAGGRKILLMLGVAASV--AVMAAVWMWGQQPEYRVLFSNFSDRDG 62 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L + N+ ++ ++ G ++ VP+ V AR+ LA+QGLP N G+EL + Sbjct: 63 GAIVAELEKMNVPYKYAEGGGAVLVPADRVHDARLKLASQGLPKGG-NVGFELMEN-QRL 120 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI--- 177 G + F++++ RA+EGE+AR+I+S+S + AARVH+ +P F +PTASV++ Sbjct: 121 GASQFVEQVNFQRAMEGELARSIESVSAVQAARVHLALPKDSIFVSEQKQPTASVLLNLH 180 Query: 178 --RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMER-NILGKS-LS 232 RA++P + AI HLVA++VP L +VTV+D G LL+ A + R N + S + Sbjct: 181 PGRALDP---QQVSAIVHLVASSVPELATKNVTVVDQNGNLLSDAGKAPRVNGMDPSQIK 237 Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD----PDSKVERSI 288 VQ +Q ++ I + +G N R+ A+++ + Y PD+ RS Sbjct: 238 YVQELQQDVVQRIESIITPIVGPGNVRAEATADVDFSRSEQAVESYKPNQTPDAMAIRSQ 297 Query: 289 RLSKDAQRSET---------SQPESAVTVEQNMP-HVSDRKVPLPRSLENTDKKEEQSNY 338 + S+ S +QP + T +P + + +K+ NY Sbjct: 298 QTSESLNGSANPAGVPGALINQPPAPATAPITVPGQATPAPAAAAAQPATSTRKDATVNY 357 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ L+RLS+ VVVN + + G+ A + ++ +I +V A G Sbjct: 358 EVDKTIQYVQQAGGGLKRLSVGVVVNYKKTVDKAGKVAMKPLSEAEKTQITNLVKEAMGY 417 Query: 399 NSRRGDTITITSMDFLENQ 417 N RGDT+ + + F Q Sbjct: 418 NQARGDTVNVVNSPFASAQ 436 >gi|324018846|gb|EGB88065.1| flagellar M-ring protein FliF [Escherichia coli MS 117-3] Length = 512 Score = 149 bits (377), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 114/398 (28%), Positives = 187/398 (46%), Gaps = 38/398 (9%) Query: 43 VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL 102 N P Y L+ L D I L++ NI +R S+ +I VP+ V + R+ LA QGL Sbjct: 3 ANPPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGAIEVPAEKVHELRLRLAQQGL 62 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162 P + G+EL D+ FG++ F +++ RALEGE++RTI +I + ARVH+ MP Sbjct: 63 PKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRTIATIGPVKGARVHLAMPKPS 120 Query: 163 SFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-A 219 F + P+ASV + + + AI HLV++AV L G+VT++D G LLT + Sbjct: 121 LFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQS 180 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 N R++ L ++ I+ I L+ +G N + V A+L+ +++ E Y Sbjct: 181 NTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYR 240 Query: 280 PDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ- 335 P+ + S+ SE S P N P ++ P+ N + +++Q Sbjct: 241 PNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPAN-NAPISTPPANQNNRQQQA 299 Query: 336 ----------------SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQG 379 SNYE++ T + ++RLS+AVVVN L + G Sbjct: 300 STTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPD--------G 351 Query: 380 KI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 K + + +I + A G + +RGD++ + + F Sbjct: 352 KPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 389 >gi|194292866|ref|YP_002008773.1| flagellar ms-ring protein [Cupriavidus taiwanensis LMG 19424] gi|193226770|emb|CAQ72721.1| FliF: Flagellar biosynthesis protein, M-ring protein, Belongs to the fliF family [Cupriavidus taiwanensis LMG 19424] Length = 576 Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 113/429 (26%), Positives = 194/429 (45%), Gaps = 68/429 (15%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y LY L D + +L + N+ ++ ++ G ++ VP+ V + R+ LA+Q Sbjct: 42 LWSRGPDYKVLYSNLSERDGGAVLQSLQQMNVPYKFAEGGGAVMVPAEKVHETRLRLASQ 101 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S + +G EL D FG++ F +++ R LEGE+AR+I+SI+ + +ARVH+ +P Sbjct: 102 GLPKSGT-AGMELMDN-QKFGISQFAEQVNYQRGLEGELARSIESIAAVQSARVHLAIPK 159 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + +PTAS+++ RAI+ AI HLV+++VP L ++++D G Sbjct: 160 PTLFVRERQKPTASIVLQLYPGRAID---EGQVAAISHLVSSSVPELTPKSISIVDQHGN 216 Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LL+ ER + L VQA++ I L +G DN R+ V A+++ + + Sbjct: 217 LLSNTGNERMLDATQLKYVQALEQNYLKRIEAILTPIVGKDNVRAQVTADVDFSIVEHTD 276 Query: 276 IVY----DPDSKVERSIRLSKDAQRSET----------SQPESAVTVEQNMPHVSDRKVP 321 Y DP RS + S+ Q+ T +QP +A P Sbjct: 277 ESYKPNQDPTRTAIRSQQTSESTQQGATPPGGVPGALSNQPPAAAVAPVTTPQT------ 330 Query: 322 LPR-------------------------------------SLENTDKKEEQSNYEINTKS 344 PR S ++++++ NYE++ Sbjct: 331 -PRAGQAPGQAGAPGAGQPGQPGQAGQAGQAAQGATATASSGPSSNRRDSTVNYELDRSV 389 Query: 345 IATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD 404 + RLS+AVVVN + + G+ + + LA+I + A G ++ RGD Sbjct: 390 RHVQQAPGGVRRLSVAVVVNYRQQADAKGKLVAEPLPPALLAQIQNLTKEAMGFSAERGD 449 Query: 405 TITITSMDF 413 +I + + F Sbjct: 450 SINVVNSPF 458 >gi|104782821|ref|YP_609319.1| flagellar MS-ring protein [Pseudomonas entomophila L48] gi|95111808|emb|CAK16532.1| flagellar basal-body M-ring protein FliF [Pseudomonas entomophila L48] Length = 592 Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 140/573 (24%), Positives = 249/573 (43%), Gaps = 91/573 (15%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92 + + A + P Y LY L D ++ L+ A+I + + N ++ V + + + Sbjct: 50 VAIGFAVVLWSQQPDYRPLYGSLAGMDTKQVMDTLASADIPYHVEPNSGALLVKADDLSR 109 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 AR+ LAA G+ S N G+EL DK G + FM+ R+LEGE+ART+ S++ + AA Sbjct: 110 ARLKLAAAGVAPSDGNVGFELLDKEQGLGTSQFMETTRYRRSLEGELARTVSSLNNVKAA 169 Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVL 210 RVH+ +P F + +P+ASV++ ++ + AI +LVA +VP LD VTV+ Sbjct: 170 RVHLAIPKSSVFVRDERKPSASVLVELYPGRALEAGQVMAIVNLVATSVPELDKSQVTVV 229 Query: 211 DSTGKLLTANEMERNIL---GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELN 267 D G LL+ ++++ L GK + ++ + ++ L LG D +++ V A+++ Sbjct: 230 DQKGNLLS-DQLQDTALSMAGKQFDYSRRMEGLLTQRVHNILQPVLGNDRYKAEVSADVD 288 Query: 268 MDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP-------------- 313 + ++PD RS + S + QR+ + P+ N P Sbjct: 289 FSAVESTSEQFNPDQPALRSEQ-SVNEQRASSQGPQGVPGALSNQPPAGASAPENARAAA 347 Query: 314 ------------------HVSDRKVPLPRSLENTDKKEEQS--NYEINTKSIATTHDNYK 353 + D P K +QS N+E++ T + Sbjct: 348 TPAGAIQPGQPLVDANGQQIMDPATGQPMLAPYPSDKRQQSTKNFELDRSISHTRQQQGR 407 Query: 354 LERLSIAVVVN-KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 L RLS+AVVV+ + +L G + LA ++V A G ++ RGD++T+ ++ Sbjct: 408 LTRLSVAVVVDDQVKLDAASGEATRTPWGAEDLARFTRLVQDAVGFDASRGDSVTVINVP 467 Query: 413 FLENQ-------LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR-LH 464 F ++ F S Q F DI+ + ++G L + L LR L Sbjct: 468 FAADRGDELVDIPFYS---QPWFWDIVKQ-----------VLGVLFILVLVFGVLRPVLT 513 Query: 465 NIDDAKKG-------EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF-SHSRNLQ 516 NI K E+GG L G + ND ++L + S S + Sbjct: 514 NITGGGKQAATDSDMELGGMIGLD----------GELANDRVSLGGPTSILLPSPSEGYE 563 Query: 517 SRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549 +++N+ + ++ + R A+++++W Sbjct: 564 AQLNA---------IKGLVAEDPGRVAQVVKEW 587 >gi|95929849|ref|ZP_01312590.1| flagellar M-ring protein FliF [Desulfuromonas acetoxidans DSM 684] gi|95134145|gb|EAT15803.1| flagellar M-ring protein FliF [Desulfuromonas acetoxidans DSM 684] Length = 521 Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 124/408 (30%), Positives = 201/408 (49%), Gaps = 27/408 (6%) Query: 20 TRILILASVILVPIMLFMAARFFVNSPH--YDNLYVKLEVSDVNRISVALSEANIDFRIS 77 +R + L +V L + LF A + + H Y L+ L +D + I L E + + + Sbjct: 19 SRKISLIAVTLFSLTLF--ALIIMQARHTDYQLLFANLSENDASSIVTWLKEQKVPYELR 76 Query: 78 DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137 G S+ VP+ V + R+ LA GLP G+E+FDK S G+T F+Q++ +RA++G Sbjct: 77 SGGQSVYVPADRVYETRLDLAGAGLPQGG-GVGFEIFDK-QSLGITDFVQKVNYLRAMQG 134 Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLV 195 E++RT+ S+S + AARVH+ +P F+ R TAS++++ K A + I +LV Sbjct: 135 ELSRTVASLSPVSAARVHLALPQKRLFKSEQQRVTASIIVKLAPGRTLKEAQVQGIVNLV 194 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEME---RNILGKSLSIVQAIQHEIEMNINKALAAF 252 A +V LD VTV+D+ GK+L+ E + L +A++ ++E L Sbjct: 195 AGSVEGLDSDYVTVVDAAGKVLSKKPDEGLSGPMTPGMLEYQRAVERQMESRAQAMLDRA 254 Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNM 312 LG+ N V A L+ + E +YDP S V RS +L + Q E + TV + Sbjct: 255 LGMANSLVKVTAVLDFAQVEKLEELYDPKSAVPRSEQLQE--------QKEGSSTVGGGV 306 Query: 313 PHVSDRKVP----LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368 P V P N+ E +NYEI+ T ++ LS++V+V ++ Sbjct: 307 PGVQANLGPGVNSAGGGGSNSTSSAETTNYEISKVVNRTVAPVGTIKHLSVSVLVAD-KM 365 Query: 369 TEVLGRSADQG---KIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 T+ A+ + + L I K+V +A GI+ RGD + + SM F Sbjct: 366 TDGEEDGAEPALTPRSEQELRTIEKMVQSALGIDKTRGDQLNVVSMPF 413 >gi|224370787|ref|YP_002604951.1| FliF [Desulfobacterium autotrophicum HRM2] gi|223693504|gb|ACN16787.1| FliF [Desulfobacterium autotrophicum HRM2] Length = 571 Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 120/428 (28%), Positives = 202/428 (47%), Gaps = 27/428 (6%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +++Q + +K + R +++ V+L F A + N Y + Y L D Sbjct: 4 LVEQTINLYKE---MPLARKILMGVVVLAMFGGFAAMFIWANKTEYKSAYSGLNQEDAAA 60 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L A +RI G++I VP+ V R+ +A G+P S G+E+FDK + FG Sbjct: 61 IVDRLKTAKTPYRIEAGGATIMVPADQVYDVRLSMAKDGIPKGS-GVGFEIFDKTD-FGT 118 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T F+Q+I R RA++GE+ARTI++ + ARV IV P F + +P+AS+++ + Sbjct: 119 TEFVQKINRRRAIQGELARTIRAFDEVKDARVMIVFPKDSVFVEETKKPSASILLELKSD 178 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--------RNILGKSLSIV 234 A+ HLVA+A+ +L VT++D+TG++L + E RN+ Sbjct: 179 LSEDKVAAVAHLVASAIEDLTPKLVTIVDTTGRILFEGKSEEEKAKIDARNLADSQYKYK 238 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD- 293 + + I L +G D V AE++ T E +YDP + +R SK Sbjct: 239 MRYETTLAERIQTMLERIVGKDKAIVRVTAEMDFSTSNTNEEIYDPFERETTFVR-SKQI 297 Query: 294 -AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 A+ +T Q + + N P V ++E TDKK + NYE++ ++ T Sbjct: 298 LAETGQTRQDSAGIPSSVN-PVVPPGGTADASAMEMTDKKNDTINYELSRRTRQTIKPMA 356 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSY-------LAEINKIVSAATGINSRRGDT 405 ++R+S+A VV+ G+ S ++ K +Y + + + IV A G N R D Sbjct: 357 VVQRVSVAAVVD-GKYEFKTDDSGNRSK--TYVPRSQVEMQQFSDIVVKAMGFNETRQDQ 413 Query: 406 ITITSMDF 413 +++ F Sbjct: 414 VSMECFPF 421 >gi|73538922|ref|YP_299289.1| flagellar MS-ring protein [Ralstonia eutropha JMP134] gi|72122259|gb|AAZ64445.1| Flagellar FliF M-ring protein [Ralstonia eutropha JMP134] Length = 568 Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 109/419 (26%), Positives = 194/419 (46%), Gaps = 55/419 (13%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y LY L D + +L + N+ ++ ++ G ++ VP+ V + R+ LA+Q Sbjct: 42 LWSRAPDYKVLYSNLSERDGGAVLQSLQQMNVPYKFAEGGGAVMVPAEKVHETRLRLASQ 101 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S + +G EL D FG++ F +++ R LEGE+AR+I+SI+ + +ARVH+ +P Sbjct: 102 GLPKSGT-TGLELMDN-QKFGISQFAEQVNYQRGLEGELARSIESIAAVQSARVHLAIPK 159 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + +PTAS+++ RAI+ AI HLV+++VP L ++++D G Sbjct: 160 PTLFVRERQKPTASIVLQLYPGRAID---EGQVAAISHLVSSSVPELTPKAISIVDQHGN 216 Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LL+ + ER + L VQA++ I L +G DN R+ V A+++ + + Sbjct: 217 LLSNSGNERMLDATQLKYVQALEQNYLKRIESILTPIVGKDNVRAQVTADVDFSIVEHTD 276 Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSL--------- 326 Y P+ + S+ Q SE++Q T +P + P P + Sbjct: 277 ESYKPNQDPTHAAIRSQ--QTSESNQ--QGATPPGGVPGALSNQPPAPATAPITTAQTPR 332 Query: 327 --------------------------------ENTDKKEEQSNYEINTKSIATTHDNYKL 354 ++++++ NYE++ + Sbjct: 333 AGQAPGQAGAPAQPQGAQAGQAQAATSTASTGPSSNRRDSTVNYELDRTVRHVQQAPGGV 392 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 RLS+AVVVN + + G+ Q + LA+I + G ++ RGD+I + + F Sbjct: 393 RRLSVAVVVNYRQQADAKGKMVAQPLPPALLAQIENLTKETMGFSADRGDSINVVNSPF 451 >gi|327481269|gb|AEA84579.1| flagellar MS-ring protein [Pseudomonas stutzeri DSM 4166] Length = 594 Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 143/601 (23%), Positives = 267/601 (44%), Gaps = 94/601 (15%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y L L D N++ L Sbjct: 24 LSFLENLSEMSMLRQIGLLVGLAASVAMGFAVVLWSQQPDYRPLLGSLAGMDANQVMETL 83 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + A+I + + N ++ V ++ + +AR+ LA G+ + SN G+E+ DK G + FM+ Sbjct: 84 AAADIAYTVEPNSGALLVKANDLARARLKLAGAGIAPADSNIGFEILDKDQGLGTSQFME 143 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINP 182 R LEGE+ RTI S++ + ARVH+ +P F + +P+ASV++ RA+ P Sbjct: 144 ATRYRRGLEGELGRTISSLNNVKGARVHLAIPKSSVFVRDERKPSASVLVELYPGRALEP 203 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHE 240 S AI +LVA +VP L+ +TV+D G LL+ + E ++ GK + ++ Sbjct: 204 S---QVMAIINLVATSVPELNKSQITVVDQKGNLLSDQQELTELSMAGKQFDYSRRMESL 260 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 ++ L LG +++ V A+++ + ++PD RS + S + QR + Sbjct: 261 YTQRVHNILQPVLGSGRYKAEVSADVDFSAVESTSETFNPDQPALRSEQ-SVNEQRQSSL 319 Query: 301 QPESAVTVEQNMP------------------------------------HVSDRKV--PL 322 P+ N P V+ + + P Sbjct: 320 PPQGVPGALSNQPPGPASAPEQANQAAAAAGAVAPGQPLVDANGQQIMDPVTGQPMLAPF 379 Query: 323 PRSLENTDKKEEQS-NYEINTKSIATTHDNYKLERLSIAVVVN-------KGRLTEVLGR 374 P DK+E+ + NYE++ T + +L RLS+AVVV+ G + V Sbjct: 380 P-----ADKREQATRNYELDRSISYTKQQHGRLRRLSVAVVVDDQMSLNAAGEMVRVPWN 434 Query: 375 SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSR 434 + D LA ++V A G ++ RGD++++ + F+ + F ++ F Sbjct: 435 ADD-------LARFTRLVQDAVGFDASRGDSVSVINTAFVADS-FGETFEEIPFYS--QP 484 Query: 435 HFATVINALVFLVGTLLVTFLGLHA-LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493 F V+ ++ ++ L++ F L L+ L N + K+ +V G P GL Sbjct: 485 WFWDVVKQVLGVLFILVLVFGVLRPVLKSLTNPNAGKELQVAGM------PGELGEDEGL 538 Query: 494 ---MPNDNIALDSSNQDIF--SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRK 548 + ND ++L S Q+I S S ++++N+ + +++ + R A+++++ Sbjct: 539 DGGLANDRVSL-SGPQNILLPSPSEGYEAQLNA---------IKNLVADDPGRVAQVVKE 588 Query: 549 W 549 W Sbjct: 589 W 589 >gi|146282929|ref|YP_001173082.1| flagellar MS-ring protein [Pseudomonas stutzeri A1501] gi|145571134|gb|ABP80240.1| flagellar M-ring protein [Pseudomonas stutzeri A1501] Length = 585 Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 143/601 (23%), Positives = 267/601 (44%), Gaps = 94/601 (15%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y L L D N++ L Sbjct: 15 LSFLENLSEMSMLRQIGLLVGLAASVAMGFAVVLWSQQPDYRPLLGSLAGMDANQVMETL 74 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + A+I + + N ++ V ++ + +AR+ LA G+ + SN G+E+ DK G + FM+ Sbjct: 75 AAADIAYTVEPNSGALLVKANDLARARLKLAGAGIAPADSNIGFEILDKDQGLGTSQFME 134 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINP 182 R LEGE+ RTI S++ + ARVH+ +P F + +P+ASV++ RA+ P Sbjct: 135 ATRYRRGLEGELGRTISSLNNVKGARVHLAIPKSSVFVRDERKPSASVLVELYPGRALEP 194 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHE 240 S AI +LVA +VP L+ +TV+D G LL+ + E ++ GK + ++ Sbjct: 195 S---QVMAIINLVATSVPELNKSQITVVDQKGNLLSDQQELTELSMAGKQFDYSRRMESL 251 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 ++ L LG +++ V A+++ + ++PD RS + S + QR + Sbjct: 252 YTQRVHNILQPVLGSGRYKAEVSADVDFSAVESTSETFNPDQPALRSEQ-SVNEQRQSSL 310 Query: 301 QPESAVTVEQNMP------------------------------------HVSDRKV--PL 322 P+ N P V+ + + P Sbjct: 311 PPQGVPGALSNQPPGPASAPEQANQAAAAAGAVAPGQPLVDANGQQIMDPVTGQPMLAPF 370 Query: 323 PRSLENTDKKEEQS-NYEINTKSIATTHDNYKLERLSIAVVVNK-------GRLTEVLGR 374 P DK+E+ + NYE++ T + +L RLS+AVVV+ G + V Sbjct: 371 P-----ADKREQATRNYELDRSISYTKQQHGRLRRLSVAVVVDDQMSLNAAGEMVRVPWN 425 Query: 375 SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSR 434 + D LA ++V A G ++ RGD++++ + F+ + F ++ F Sbjct: 426 ADD-------LARFTRLVQDAVGFDASRGDSVSVINTAFVADS-FGETFEEIPFYS--QP 475 Query: 435 HFATVINALVFLVGTLLVTFLGLHA-LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493 F V+ ++ ++ L++ F L L+ L N + K+ +V G P GL Sbjct: 476 WFWDVVKQVLGVLFILVLVFGVLRPVLKSLTNPNAGKELQVAGM------PGELGEDEGL 529 Query: 494 ---MPNDNIALDSSNQDIF--SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRK 548 + ND ++L S Q+I S S ++++N+ + +++ + R A+++++ Sbjct: 530 DGGLANDRVSL-SGPQNILLPSPSEGYEAQLNA---------IKNLVADDPGRVAQVVKE 579 Query: 549 W 549 W Sbjct: 580 W 580 >gi|302185562|ref|ZP_07262235.1| flagellar MS-ring protein [Pseudomonas syringae pv. syringae 642] Length = 594 Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 148/579 (25%), Positives = 248/579 (42%), Gaps = 100/579 (17%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92 + + A + P Y LY L D +I L+ ANI++ + N ++ V S V + Sbjct: 49 VAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTLTAANINYTVEPNSGALLVKSDDVQR 108 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 ARI LA G+ + +N G+E+ DK G + FM+ R LEGE+ARTI +++ + A Sbjct: 109 ARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFMEATRYRRGLEGELARTISALNNVKGA 168 Query: 153 RVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDV 207 RVH+ +P F + +P+ASV++ R++ PS AI +LVA +VP L + Sbjct: 169 RVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEPS---QVMAIINLVATSVPELSKSQI 225 Query: 208 TVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE 265 TV+D G LL+ A E + GK + ++ + + L LG D +++ V A Sbjct: 226 TVVDQKGALLSDQAENSELTMAGKQFDYSRRMESMLTQRVQNILQPILGNDRYKAEVSAV 285 Query: 266 LNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE-----------TSQPESAVTVEQ---- 310 ++ + ++PD RS + S + QRS ++QP T Q Sbjct: 286 VDFSAVESTAESFNPDQPALRSEQ-SVNEQRSSGSSSGGVPGALSNQPPGPATAPQTAGG 344 Query: 311 ------------------NMPHVSDRKVPLPRSLENTDKKEEQS--NYEINTKSIATTHD 350 N + D P K QS N+E++ T Sbjct: 345 GAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPADKRVQSTKNFELDRSISHTKQQ 404 Query: 351 NYKLERLSIAVVVN--------KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402 +L RLS+AVVV+ G +T +AD LA ++V A G ++ R Sbjct: 405 QGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAAD-------LARFTRLVQDAVGFDASR 457 Query: 403 GDTITITSMDF-------LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455 GD++++ ++ F L F S Q F DI+ + VG + + L Sbjct: 458 GDSVSVINVPFSSERAEVLPEASFYS---QPWFWDIVKQA-----------VGVIFILIL 503 Query: 456 GLHALRR-LHNIDDAKKGEV---GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF-S 510 LR L+NI + K+ E+ GG + L G + ND ++L + S Sbjct: 504 VFGVLRPVLNNITNGKRKELAGFGGDAELG----GMGGLDGELSNDRVSLGGPQSILLPS 559 Query: 511 HSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549 + +++N+ S ++ + R A+++++W Sbjct: 560 PTEGYDAQLNAIKS---------LVAEDPGRVAQVVKEW 589 >gi|268589960|ref|ZP_06124181.1| flagellar M-ring protein FliF [Providencia rettgeri DSM 1131] gi|291314677|gb|EFE55130.1| flagellar M-ring protein FliF [Providencia rettgeri DSM 1131] Length = 561 Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 115/394 (29%), Positives = 201/394 (51%), Gaps = 26/394 (6%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++ SP Y L L D I L++ N+ ++I+DNGS+I VP+ V + R+ LA Sbjct: 46 LWLRSPDYRVLLSNLSAKDGGDIVGQLTQMNVPYQIADNGSAILVPADKVHELRLKLAQS 105 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP N+G+EL DK FG++ F ++I RALEGE++RTI+S+S + +ARVH+ +P Sbjct: 106 GLPKGG-NTGFELLDK-EQFGISQFSEQINYQRALEGELSRTIESLSPVQSARVHLAIPK 163 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + PTASV + + + + AI H+V+++V L +V ++D G+LLT Sbjct: 164 PTLFVREQKLPTASVTVGLLPGRMLDEGQISAIVHMVSSSVTGLTASNVIIVDQAGRLLT 223 Query: 219 ANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 N+ +++ + + + ++ ++ I L+ +G N + V A+++ + Sbjct: 224 NNDNSQQSANSAQIKMTKEMESHLKQRIEDILSPLVGRANIHAQVTAQMDFSKVEQTSEE 283 Query: 278 YD----PDSKVERSIRLSKDAQRSE----------TSQPESAVT--VEQNMPHVSDRKVP 321 Y PDS RS + S+ Q + ++QP SA + +E N + + Sbjct: 284 YKPNQTPDSAAIRSRQNSQSMQNNNGGTGGVPGALSNQPVSAPSAPIETNKDNKDGAQTA 343 Query: 322 LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK- 380 R+ + + +E +NYE++ K T ++RLS+AV+VN G + + K Sbjct: 344 NNRNSVSNSQSDETTNYEVDRKISHTQRQIGVVDRLSVAVIVNYHSQD---GENGPEMKP 400 Query: 381 -IDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 L +I + A G ++ RGD++ IT+ F Sbjct: 401 LPPEMLQQIEALTREAMGFSTARGDSLNITNSLF 434 >gi|299131954|ref|ZP_07025149.1| flagellar M-ring protein FliF [Afipia sp. 1NLS2] gi|298592091|gb|EFI52291.1| flagellar M-ring protein FliF [Afipia sp. 1NLS2] Length = 517 Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 108/375 (28%), Positives = 186/375 (49%), Gaps = 5/375 (1%) Query: 43 VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL 102 V +P LY L D + + L I + + ++G+ I VP V + R+ LA +G Sbjct: 19 VTAPQMVTLYTDLSYDDASGVMKELDRQGIPYELKNDGAIIMVPKDKVTRLRMKLA-EGG 77 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162 GYE+FDK ++ G TSF+Q + +RALEGE+ARTI+SI I A RVH+V+PD Sbjct: 78 LPKGGGVGYEIFDKSDTLGSTSFVQNVNHLRALEGELARTIKSIDRIQAVRVHLVLPDRP 137 Query: 163 SFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM 222 F + P+A++++R + AIRHLVA++V L V+++D G+LL Sbjct: 138 LFSREKPEPSAAIVVRVRGALEPQQVRAIRHLVASSVNGLKPQRVSIVDENGQLLADGSG 197 Query: 223 ERNILGKSLSIVQAIQHE--IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP 280 + N +G + + I +E + I + + +G R + A+ + + +DP Sbjct: 198 DANGMGDVGADERRIAYENRLRKQIESIVTSVVGAGRARVQLSADFDYNKVTETSDKFDP 257 Query: 281 DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEI 340 + +V RS + +++ + Q VTV MP + ++ + + K EE +NYEI Sbjct: 258 EGRVLRSSQTREESSATSNGQ-NGQVTVNNEMPG-NQQQNAANAGKDQSKKSEEINNYEI 315 Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400 + + + +++R+S+AV+V+ G + L I +V +A G Sbjct: 316 SRTTKTEVTEAGRVQRVSVAVLVDGTYSKNEKGDMVYAPRSKEDLERIATLVRSAIGFEK 375 Query: 401 RRGDTITITSMDFLE 415 RGD + + ++ F E Sbjct: 376 NRGDQVDVVNLRFAE 390 >gi|254785458|ref|YP_003072887.1| flagellar MS-ring protein [Teredinibacter turnerae T7901] gi|237683992|gb|ACR11256.1| flagellar M-ring protein FliF [Teredinibacter turnerae T7901] Length = 558 Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 119/442 (26%), Positives = 209/442 (47%), Gaps = 34/442 (7%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92 + + A + Y LY L+ D + L +I ++I + ++ VP + K Sbjct: 39 VAIGFAVVLWSQGEDYKPLYGSLDRLDSAEVGQVLDFNDIPYKIDGSTGALLVPVDKLQK 98 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 ARI LA G+ G+EL D+ G + FM+ R+LEGE+ARTI SI+ + +A Sbjct: 99 ARILLAENGI-QGDKTIGFELLDQEQPLGTSQFMEATRYRRSLEGELARTIASINSVRSA 157 Query: 153 RVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDV 207 RVH+ +P F + G P+ASV + R I P K I +LVAA++P LD +V Sbjct: 158 RVHLAIPKRSVFVRDGREPSASVFLDLYPGRPIKP---KQIAGIANLVAASIPELDSTNV 214 Query: 208 TVLDSTGKLLTANEMERNILGKS--LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE 265 T++D G L+ + + S L + ++ +I + I + L +G NF++ V A+ Sbjct: 215 TIVDQKGNLMEVAPEDEKLAQASQHLDYTRKVEDDIVLRIRRLLTPIIGDANFKTEVAAD 274 Query: 266 LNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV--SDRKVPLP 323 L+ + ++PD RS + S++ QR P N P + +V +P Sbjct: 275 LDFTEMEQAAETFNPDLPAIRSEQTSEE-QRIGAGGPGGIPGALTNQPPADGAAPEVAVP 333 Query: 324 RSLENTDKKEEQS------NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSAD 377 + +QS NYE++ T H +L RL++AVVV+ + + R+A+ Sbjct: 334 GGGGDGQTPPQQSQSRATRNYELDRTVSYTKHQKGRLRRLTVAVVVD-----DKVQRNAE 388 Query: 378 QGK------IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDI 431 G+ ++ L + +V A G ++ RGD++ + + F+ F+SG + + D Sbjct: 389 TGEATRVPWTEAELERLAILVRDAVGFSAARGDSVNVLNEPFVAQLDFDSGDLPIWKEDW 448 Query: 432 ---LSRHFATVINALVFLVGTL 450 L++ A + + ++G + Sbjct: 449 FLSLAKQLAGFLIIVALILGLM 470 >gi|330972435|gb|EGH72501.1| flagellar MS-ring protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 594 Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 148/579 (25%), Positives = 248/579 (42%), Gaps = 100/579 (17%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92 + + A + P Y LY L D +I L+ ANI++ + N ++ V S V + Sbjct: 49 VAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTLTAANINYTVEPNSGALLVKSDDVQR 108 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 ARI LA G+ + +N G+E+ DK G + FM+ R LEGE+ARTI +++ + A Sbjct: 109 ARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFMEATRYRRGLEGELARTISALNNVKGA 168 Query: 153 RVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDV 207 RVH+ +P F + +P+ASV++ R++ PS AI +LVA +VP L + Sbjct: 169 RVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEPS---QVMAIINLVATSVPELSKSQI 225 Query: 208 TVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE 265 TV+D G LL+ A E + GK + ++ + + L LG D +++ V A Sbjct: 226 TVVDQKGTLLSDQAENSELTMAGKQFDYSRRMEGMLTQRVQNILQPILGNDRYKAEVSAV 285 Query: 266 LNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE-----------TSQPESAVTVEQ---- 310 ++ + ++PD RS + S + QRS ++QP T Q Sbjct: 286 VDFSAVESTAESFNPDQPALRSEQ-SVNEQRSSSSSSGGVPGALSNQPPGPATAPQTAGG 344 Query: 311 ------------------NMPHVSDRKVPLPRSLENTDKKEEQS--NYEINTKSIATTHD 350 N + D P K QS N+E++ T Sbjct: 345 GAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPADKRVQSTKNFELDRSISHTKQQ 404 Query: 351 NYKLERLSIAVVVN--------KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402 +L RLS+AVVV+ G +T +AD LA ++V A G ++ R Sbjct: 405 QGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAAD-------LARFTRLVQDAVGFDASR 457 Query: 403 GDTITITSMDF-------LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455 GD++++ ++ F L F S Q F DI+ + VG + + L Sbjct: 458 GDSVSVINVPFSSERAEVLPEASFYS---QPWFWDIVKQA-----------VGVIFILIL 503 Query: 456 GLHALRR-LHNIDDAKKGEV---GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF-S 510 LR L+NI + K+ E+ GG + L G + ND ++L + S Sbjct: 504 VFGVLRPVLNNITNGKRKELAGFGGDAELG----GMGGLDGELSNDRVSLGGPQSILLPS 559 Query: 511 HSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549 + +++N+ S ++ + R A+++++W Sbjct: 560 PTEGYDAQLNAIKS---------LVAEDPGRVAQVVKEW 589 >gi|330953748|gb|EGH54008.1| flagellar MS-ring protein [Pseudomonas syringae Cit 7] Length = 594 Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 148/579 (25%), Positives = 248/579 (42%), Gaps = 100/579 (17%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92 + + A + P Y LY L D +I L+ ANI++ + N ++ V S V + Sbjct: 49 VAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTLTAANINYTVEPNSGALLVKSDDVQR 108 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 ARI LA G+ + +N G+E+ DK G + FM+ R LEGE+ARTI +++ + A Sbjct: 109 ARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFMEATRYRRGLEGELARTISALNNVKGA 168 Query: 153 RVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDV 207 RVH+ +P F + +P+ASV++ R++ PS AI +LVA +VP L + Sbjct: 169 RVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEPS---QVMAIINLVATSVPELSKSQI 225 Query: 208 TVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE 265 TV+D G LL+ A E + GK + ++ + + L LG D +++ V A Sbjct: 226 TVVDQKGALLSDQAENSELTMAGKQFDYSRRMESMLTQRVQNILQPILGNDRYKAEVSAV 285 Query: 266 LNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE-----------TSQPESAVTVEQ---- 310 ++ + ++PD RS + S + QRS ++QP T Q Sbjct: 286 VDFSAVESTAESFNPDQPALRSEQ-SVNEQRSSSSSSGGVPGALSNQPPGPATAPQTAGG 344 Query: 311 ------------------NMPHVSDRKVPLPRSLENTDKKEEQS--NYEINTKSIATTHD 350 N + D P K QS N+E++ T Sbjct: 345 GAAGAAGPIAPGQPLLDANGQQIMDPGTGQPALAPYPADKRVQSTKNFELDRSISHTKQQ 404 Query: 351 NYKLERLSIAVVVN--------KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402 +L RLS+AVVV+ G +T +AD LA ++V A G ++ R Sbjct: 405 QGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAAD-------LARFTRLVQDAVGFDASR 457 Query: 403 GDTITITSMDF-------LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455 GD++++ ++ F L F S Q F DI+ + VG + + L Sbjct: 458 GDSVSVINVPFSSERAEVLPEASFYS---QPWFWDIVKQA-----------VGVIFILIL 503 Query: 456 GLHALRR-LHNIDDAKKGEV---GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF-S 510 LR L+NI + K+ E+ GG + L G + ND ++L + S Sbjct: 504 VFGVLRPVLNNITNGKRKELAGFGGDAELG----GMGGLDGELSNDRVSLGGPQSILLPS 559 Query: 511 HSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549 + +++N+ S ++ + R A+++++W Sbjct: 560 PTEGYDAQLNAIKS---------LVAEDPGRVAQVVKEW 589 >gi|170024616|ref|YP_001721121.1| flagellar MS-ring protein [Yersinia pseudotuberculosis YPIII] gi|169751150|gb|ACA68668.1| flagellar M-ring protein FliF [Yersinia pseudotuberculosis YPIII] Length = 570 Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 141/551 (25%), Positives = 258/551 (46%), Gaps = 73/551 (13%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + SP Y LY L D I L++ NI +R +DNG ++ +P+ V + R+ LA Q Sbjct: 46 LWAKSPDYRVLYSNLSDRDGGDIVTQLTQLNIPYRFADNGGALLIPAEKVHETRLRLAQQ 105 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F ++I RALEGE++RTI ++ ++ RVH+ MP Sbjct: 106 GLPKGGA-VGFELLDQ-EKFGISQFSEQINYQRALEGELSRTIGTLGPVLNVRVHLAMPK 163 Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + PTASV + A+ P AI ++V+++V L G+VTV+D TG+LL Sbjct: 164 PSLFVREQKSPTASVTL-ALQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLL 222 Query: 218 T-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 T ++ R++ L +++ + I LA +G N + V A+++ +++ + Sbjct: 223 TQSDSAGRDLNASQLKFTSEVENRYQRRIENILAPMVGNGNVHAQVTAQVDFASREQTDE 282 Query: 277 VYDPDSKVE----RSIRLSKDAQRSETS--QPESAVTVEQNMPHVSDRKVPLP------- 323 Y P+ RS ++S Q T+ A++ + + ++ ++P P Sbjct: 283 EYKPNQAANQGAVRSQQVSTSEQLGGTNVGGVPGALSNQPPVAPIAPIEIPQPAGAAANN 342 Query: 324 -------------------RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 ++ + + ++ +N+E++ T ++RLS+AVVVN Sbjct: 343 AAPANAAATANANTTATAAKASSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVN 402 Query: 365 --KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 + + + S DQ LA++ + A G ++ RGDT+ + + F + Sbjct: 403 YTSDKAGKPIALSKDQ------LAQVESLTREAMGFSTVRGDTLNVVNTPFTASDDTRGS 456 Query: 423 TV----QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 ++ Q SF D L +NA +L+ L+ L LR + AKK +V K+ Sbjct: 457 SLPFWQQQSFFDQL-------LNAGRYLLILLVAWILWRKLLRPML----AKK-QVADKA 504 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 S +++ V T + S +++ +N Q R+++ V Q R+ + + + Sbjct: 505 AAS---VNNIVQTAQAAE---TVKQSKEELALRKKN-QQRVSAEVQAQ---RIRELADKD 554 Query: 539 EERFAKILRKW 549 A ++R+W Sbjct: 555 PRVVALVIRQW 565 >gi|84502563|ref|ZP_01000699.1| flagellar FliF M-ring protein [Oceanicola batsensis HTCC2597] gi|84389375|gb|EAQ02172.1| flagellar FliF M-ring protein [Oceanicola batsensis HTCC2597] Length = 238 Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 87/223 (39%), Positives = 139/223 (62%), Gaps = 12/223 (5%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNS---PHYDNLYVKLEVSDV 60 + LL+ K+ LG+ R++ L + ++L +A F V + P Y LY L S+ Sbjct: 1 MQALLENLKA---LGQGRLIALG---VTGVVLVLATFFGVRAVLEPSYSTLYRDLTPSEA 54 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +R+ AL A ++ +GS +SVP + +AR+ LA QGL + +G+E+FD+ + Sbjct: 55 SRMVGALEGAGFAVQVDSSGSILSVPQEDLARARMELAGQGLVGDGA-AGWEIFDEASGL 113 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI--R 178 G+ SFMQ+I R+RALEGE+AR+IQ+I G+ AARVH+V+P+ +F + +P++SV+I R Sbjct: 114 GMNSFMQKINRLRALEGELARSIQTIDGVDAARVHLVLPEREAFSRERPQPSSSVIIRSR 173 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE 221 A + + A+AIR LV++AVP + G VTVL + G+ + A E Sbjct: 174 AGHQVNLRQAQAIRALVSSAVPEMSPGRVTVLTANGETILAEE 216 >gi|66046686|ref|YP_236527.1| flagellar MS-ring protein [Pseudomonas syringae pv. syringae B728a] gi|63257393|gb|AAY38489.1| Flagellar FliF M-ring protein [Pseudomonas syringae pv. syringae B728a] Length = 594 Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 148/579 (25%), Positives = 248/579 (42%), Gaps = 100/579 (17%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92 + + A + P Y LY L D +I L+ ANI++ + N ++ V S V + Sbjct: 49 VAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTLTAANINYTVEPNSGALLVKSDDVQR 108 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 ARI LA G+ + +N G+E+ DK G + FM+ R LEGE+ARTI +++ + A Sbjct: 109 ARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFMEATRYRRGLEGELARTISALNNVKGA 168 Query: 153 RVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDV 207 RVH+ +P F + +P+ASV++ R++ PS AI +LVA +VP L + Sbjct: 169 RVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEPS---QVMAIINLVATSVPELSKSQI 225 Query: 208 TVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE 265 TV+D G LL+ A E + GK + ++ + + L LG D +++ V A Sbjct: 226 TVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGMLTQRVQNILQPILGNDRYKAEVSAV 285 Query: 266 LNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE-----------TSQPESAVTVEQ---- 310 ++ + ++PD RS + S + QRS ++QP T Q Sbjct: 286 VDFSAVESTAESFNPDQPALRSEQ-SVNEQRSSSSSSGGVPGALSNQPPGPATAPQTAGG 344 Query: 311 ------------------NMPHVSDRKVPLPRSLENTDKKEEQS--NYEINTKSIATTHD 350 N + D P K QS N+E++ T Sbjct: 345 GAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPADKRVQSTKNFELDRSISHTKQQ 404 Query: 351 NYKLERLSIAVVVN--------KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402 +L RLS+AVVV+ G +T +AD LA ++V A G ++ R Sbjct: 405 QGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAAD-------LARFTRLVQDAVGFDASR 457 Query: 403 GDTITITSMDF-------LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455 GD++++ ++ F L F S Q F DI+ + VG + + L Sbjct: 458 GDSVSVINVPFSSERAEVLPEASFYS---QPWFWDIVKQA-----------VGVIFILIL 503 Query: 456 GLHALRR-LHNIDDAKKGEV---GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF-S 510 LR L+NI + K+ E+ GG + L G + ND ++L + S Sbjct: 504 VFGVLRPVLNNITNGKRKELAGFGGDAELG----GMGGLDGELSNDRVSLGGPQSILLPS 559 Query: 511 HSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549 + +++N+ S ++ + R A+++++W Sbjct: 560 PTEGYDAQLNAIKS---------LVAEDPGRVAQVVKEW 589 >gi|186895144|ref|YP_001872256.1| flagellar MS-ring protein [Yersinia pseudotuberculosis PB1/+] gi|186698170|gb|ACC88799.1| flagellar M-ring protein FliF [Yersinia pseudotuberculosis PB1/+] Length = 570 Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 123/465 (26%), Positives = 218/465 (46%), Gaps = 58/465 (12%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + SP Y LY L D I L++ NI +R +DNG ++ +P+ V + R+ LA Q Sbjct: 46 LWAKSPDYRVLYSNLSDRDGGDIVTQLTQLNIPYRFADNGGALLIPAEKVHETRLRLAQQ 105 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F ++I RALEGE++RTI ++ ++ RVH+ MP Sbjct: 106 GLPKGGA-VGFELLDQ-EKFGISQFSEQINYQRALEGELSRTIGTLGPVLNVRVHLAMPK 163 Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + PTASV + A+ P AI ++V+++V L G+VTV+D TG+LL Sbjct: 164 PSLFVREQKSPTASVTL-ALQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLL 222 Query: 218 T-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 T ++ R++ L +++ + I LA +G N + V A+++ +++ + Sbjct: 223 TQSDSAGRDLNASQLKFTSEVENRYQRRIENILAPMVGNGNVHAQVTAQVDFASREQTDE 282 Query: 277 VYDPDSKVE----RSIRLSKDAQRSETS--QPESAVTVEQNMPHVSDRKVPLPRSL---- 326 Y P+ RS ++S Q T+ A++ + + ++ ++P P Sbjct: 283 EYKPNQAANQGAVRSQQVSTSEQLGGTNVGGVPGALSNQPPVAPIAPIEIPQPAGAAANN 342 Query: 327 ----------------------ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 + + ++ +N+E++ T ++RLS+AVVVN Sbjct: 343 AAPANAATTANANTTATAAKASSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVN 402 Query: 365 --KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 + + + S DQ LA++ + A G ++ RGDT+ + + F + Sbjct: 403 YTSDKAGKPIALSKDQ------LAQVESLTREAMGFSTVRGDTLNVVNTPFTASDDTRGS 456 Query: 423 TV----QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 ++ Q SF D L +NA +L+ L+ L LR + Sbjct: 457 SLPFWQQQSFFDQL-------LNAGRYLLILLVAWILWRKLLRPM 494 >gi|225850271|ref|YP_002730505.1| flagellar M-ring protein FliF [Persephonella marina EX-H1] gi|225645356|gb|ACO03542.1| flagellar M-ring protein FliF [Persephonella marina EX-H1] Length = 529 Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 114/425 (26%), Positives = 214/425 (50%), Gaps = 24/425 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 IL + +F K + R LI+A ++L+ + +A + V Y LY L D Sbjct: 6 ILKKTSEFIKKNLN-PRNIALIIAGLLLITFLGIIAFKT-VTKEEYGVLYTHLNPDDAGS 63 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L E NI +++ +GS I VP + V + R+ LAA+GLPS + G+E+F++ G+ Sbjct: 64 ILSVLQEENIPYKVEGDGSIILVPRNKVHEIRLKLAAKGLPSGKT-VGFEIFEE-PKMGI 121 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T F + + +RALEGE++RTI+ + + A+V+I +P F + P AS++++ + P Sbjct: 122 TQFQENVNYLRALEGELSRTIRQLDPVRDAKVNIALPKESIFVREEDEPKASIILK-LWP 180 Query: 183 S---VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQA 236 + +A+ LV+ AVP L +VTV+D+ G++L+ E + K++ I + Sbjct: 181 GKDLTKEQVKAVVFLVSHAVPKLKPENVTVVDNRGRVLSDILEEDTVTAVSDKNVEIKRK 240 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV---ERSIRLSKD 293 ++ +IE N+ L+ LG E+ Q ++ +YDPD ER I+ + Sbjct: 241 LERQIEKNVQTMLSRALGEGKVVVRATVEIETGKLQQQDEIYDPDRTAVVSERKIQEKEK 300 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 + + + P T N+P V D + ++ ++K+ NY + + T + Sbjct: 301 EFKQQEALPPGTPT---NVPPVID-ETGQGSIIKQKERKDTTKNYNVTKSLVNTQKPIFN 356 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQG-----KIDSYLAEINKIVSAATGINSRRGDTITI 408 ++++S+ V+++ G+ +V ++ + + L +V +A G + +RGD +T+ Sbjct: 357 IKKISVGVLID-GKYEKVKDEEGNEKYRFIPRSEEELKVYESLVKSAIGYDPKRGDQVTV 415 Query: 409 TSMDF 413 S+ F Sbjct: 416 VSVPF 420 >gi|27904573|ref|NP_777699.1| flagellar M-ring protein [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|38257545|sp|Q89B00|FLIF_BUCBP RecName: Full=Flagellar M-ring protein gi|27903970|gb|AAO26804.1| flagellar M-ring protein [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 555 Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 131/450 (29%), Positives = 215/450 (47%), Gaps = 67/450 (14%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 F S SL R+L+L V L+ +++F FF +Y LY L D I L Sbjct: 20 FFSNLSLN-VRVLLL--VFLITLIVFYI--FFFKPLNYSILYNNLSNDDEKSIVSRLISL 74 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 I F+ + N S + +PS+ + K + LA QGLP G+EL D FGL+ F +E+ Sbjct: 75 KIPFKFNQNHSELLIPSNALKKVYLDLAEQGLPKEKK-VGFELLD-TEKFGLSQFNEEVN 132 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVY 185 RALEGE+AR+IQ + I ARVHIV+ F + P+ASV++ R +N Y Sbjct: 133 YERALEGELARSIQKLENIKTARVHIVLSKSSVFIREKKIPSASVILEIKPGRYLN---Y 189 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA------NEMERNILGKSLSIVQAIQH 239 +I H+VA V NL + ++T++D G LL++ + N L S I ++ Sbjct: 190 NQINSILHIVAQGVSNLQIENITIVDQFGNLLSSMNDLYNDSYSNNQLKYSNEIETGYKN 249 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD-SKVERSIRLSKDAQRSE 298 +IE L +GV+N + V A+++ D Q+ E + P+ S ++S+R ++ + E Sbjct: 250 KIE----SVLVPLVGVNNIHAQVTAQISFDKQENSEERFTPNYSNEKQSVRSVQNKKNIE 305 Query: 299 TSQPESAVTVEQNMPHVSDRKV------PLPRSLENTDKKEEQSNYEINTK--------- 343 S+ S + N +S++K+ L + N EQ + N+K Sbjct: 306 FSEKYSDNSFSSNQGVLSNKKLNDLSNSSLLFNHNNIPNFSEQVSSTKNSKRNLSDESVI 365 Query: 344 SIATTHDNY------------------KLERLSIAVVVN--KGRLTEVLGRSADQGKIDS 383 ++T+ NY ++RLS+AVV+N K + + + S D+ Sbjct: 366 PQSSTNQNYIVNYELDHVISHNKFNVGNVKRLSVAVVINYVKDKHGKFVSLSTDK----- 420 Query: 384 YLAEINKIVSAATGINSRRGDTITITSMDF 413 L I K+V + G + +RGD++++ + F Sbjct: 421 -LNSIKKLVCESVGFSRKRGDSVSVVNFKF 449 >gi|192359622|ref|YP_001982191.1| flagellar MS-ring protein [Cellvibrio japonicus Ueda107] gi|190685787|gb|ACE83465.1| flagellar M-ring protein FliF [Cellvibrio japonicus Ueda107] Length = 569 Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 133/476 (27%), Positives = 227/476 (47%), Gaps = 36/476 (7%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 F + +SL R + L + + + A ++ Y LY +++ D + L + Sbjct: 22 FLEGFSSLNLLRQIGLIITLAASVAIGFAVVMWMQGDDYRPLYGRMDNLDAANVIDVLDQ 81 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 I F++ N +I V + V AR+ LA GLPSS +G+EL DK G + F++ Sbjct: 82 HKIKFKMDTNTGAILVAADDVHMARLKLAEFGLPSSPV-AGFELMDKEQPLGTSQFVENT 140 Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSV 184 R++EGE+ARTI SI+ I +ARVH+ MP F + A+PTASV + R + P+ Sbjct: 141 RYQRSIEGELARTITSITSIRSARVHLAMPKKTVFVRDAAKPTASVFVEVFAGRTVAPAQ 200 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHEIE 242 K AI +LVA++VP++ M +VTV+D G LL+ E ++L + + ++ + Sbjct: 201 VK---AIMNLVASSVPDMKMENVTVVDQHGSLLSTGEESSDLLLATRQHQYAKEVETSVI 257 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSE--- 298 IN L +G FR+ V A+++ + ++PD RS + L++ SE Sbjct: 258 QRINSILEPVVGDGKFRAQVNADIDFTAVEQAAETFNPDLPAIRSEQTLNESRTGSELAG 317 Query: 299 ------TSQPE--SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 T+QP +A EQ P P+ + ++++ NYE++ T H Sbjct: 318 GIPGALTNQPPGTAAQAPEQIDPATGQ---PIQQQPPKNNREQATRNYELDRTISYTKHQ 374 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 L+RL++AVVV+ + G D+ L ++ +V A G ++ RGD++ + + Sbjct: 375 QGTLKRLTVAVVVDDKVVRNAEGVETRVPWTDAELERLSILVRDAVGFSAVRGDSVNVLN 434 Query: 411 MDFLENQLFNSG---TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 F SG +VQ D + ++ + +L G L++ + LR L Sbjct: 435 SPF-------SGIDASVQTQVEDAMPWWQQWIMANIKYLAGILVILIVVFGLLRPL 483 >gi|300994277|ref|ZP_07180829.1| flagellar M-ring protein FliF [Escherichia coli MS 200-1] gi|300304942|gb|EFJ59462.1| flagellar M-ring protein FliF [Escherichia coli MS 200-1] Length = 508 Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 120/419 (28%), Positives = 196/419 (46%), Gaps = 45/419 (10%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSS 105 P Y L+ L D I L++ NI +R S+ +I VP+ V + R+ LA QGLP Sbjct: 2 PDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKG 61 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 + G+EL D+ FG++ F +++ RALEGE++RTI++I + ARVH+ MP F Sbjct: 62 GA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFV 119 Query: 166 KIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEM 222 + P+ASV + + + AI HLV++AV L G+VT++D G LLT +N Sbjct: 120 REQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTS 179 Query: 223 ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS 282 R++ L ++ I+ I L+ +G N + V A+L+ +++ E Y P+ Sbjct: 180 GRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIHAQVSAQLDFASKEQTEEQYRPNG 239 Query: 283 KVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ---- 335 + S+ SE S P N P ++ P+ N + +++Q Sbjct: 240 DESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPAN-NAPISTPPTNQNNRQQQASTT 298 Query: 336 -------------SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI- 381 SNYE++ T + ++RLS+AVVVN L + GK Sbjct: 299 SNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPD--------GKPL 350 Query: 382 ---DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV-----QVSFMDIL 432 + + +I + A G + +RGD++ + + F N SG Q +F+D L Sbjct: 351 PLSNEQMKQIEALTREAMGFSEKRGDSLNVVNSPF--NSSDESGGALPFWQQQAFIDQL 407 >gi|261855054|ref|YP_003262337.1| flagellar M-ring protein FliF [Halothiobacillus neapolitanus c2] gi|261835523|gb|ACX95290.1| flagellar M-ring protein FliF [Halothiobacillus neapolitanus c2] Length = 590 Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 125/461 (27%), Positives = 227/461 (49%), Gaps = 44/461 (9%) Query: 21 RILILASVILVPIMLFMAARF-FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN 79 ++LIL V L + FM F + P LY L + + AL A ++++S + Sbjct: 37 QLLIL--VALAATLSFMVGFFLWGQKPSLVPLYTNLGPKESAAVVEALRAAKKNYQLSAD 94 Query: 80 GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEI 139 G+ + P+ + R+ LA +GLPS + G E+ DK S G + F+++ A+E E+ Sbjct: 95 GAILVDPAQLPA-VRMLLAGEGLPSGN-GVGLEMLDKDQSLGTSQFVEQARYQHAIEIEL 152 Query: 140 ARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIR---HLVA 196 AR+I++I G+ AARVH+ P F + +PTASV++ ++P +A+ +R HLVA Sbjct: 153 ARSIETIQGVSAARVHLATPKQSVFVREQQKPTASVVVE-LSPGQSLTADQVRAIVHLVA 211 Query: 197 AAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQAIQHEIEMNINKALAAFL 253 ++V + +V+V+D G+LL+ N + + +G K + Q ++ I L + Sbjct: 212 SSVAGMKPENVSVIDQRGELLSQNSDDASGMGLTDKQFAYRQRVERAYARQIEALLTPIV 271 Query: 254 GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR-------------SETS 300 G + R+ V A+++ Q+ Y P + V S + + D R + ++ Sbjct: 272 GANQVRAQVSADIDFSRQEGTSETYGPKTGVVLSEQ-TNDTTRALGDQGINGGVPGALSN 330 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLEN-----------TDKKEEQSNYEINTKSIATTH 349 QP TV P S P P +L+ + +K E NY ++ T + Sbjct: 331 QPPGGGTV---TPQTSGGLQP-PANLDVQQYQQIIQTPISTQKNETRNYNVDKDIRHTQY 386 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 + +++L++AV++++ +T+ G++ + D+ LA I +VS A G++ +RGD +T+ Sbjct: 387 ASGAVDKLNVAVLLDEKTVTDKDGKTKTEPMSDAELARIKDLVSQAVGLDEQRGDKLTLA 446 Query: 410 SMDFLENQLFNSGTV---QVSFMDILSRHFATVINALVFLV 447 S+ F+E ++ Q FM +L V L+FL+ Sbjct: 447 SIPFVEQKIEKVSVPLWQQEWFMPLLKNLGLGVAMLLIFLM 487 >gi|82702474|ref|YP_412040.1| flagellar MS-ring protein [Nitrosospira multiformis ATCC 25196] gi|82410539|gb|ABB74648.1| flagellar M-ring protein FliF [Nitrosospira multiformis ATCC 25196] Length = 567 Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 111/403 (27%), Positives = 191/403 (47%), Gaps = 27/403 (6%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92 + L A + P Y L+ + D I +L + N+ ++ ++ G +I VPSS V Sbjct: 56 VALLAAGWMWTQGPDYKVLFSNVSDGDGGAIIASLQQMNVPYKFAEGGGAILVPSSQVHD 115 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 R+ LA+QGLP G+EL + FG + F++++ RALEGE+AR++Q+++ + +A Sbjct: 116 TRLKLASQGLPRGGL-VGFELMEN-QKFGTSQFLEQVNFQRALEGELARSVQALAAVDSA 173 Query: 153 RVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDV 207 RVH+ +P F + +P+ASV++ R ++P + AI HLV+++VPNL + +V Sbjct: 174 RVHLAIPKQSVFMREQQKPSASVLVNLYPGRTLDP---QQVNAIVHLVSSSVPNLHVKNV 230 Query: 208 TVLDSTGKLLTANEMERNILG---KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVA 264 TV+D G LLT + G L + A++ I L +G +N R+ V A Sbjct: 231 TVVDQQGDLLTRIDESNPNTGLDPAQLKYLHALEQSYIKRIEAILIPIVGQENVRAQVAA 290 Query: 265 ELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET--SQPESAVT------------VEQ 310 E++ + Y P+ S S+ + S +Q E V Sbjct: 291 EVDFAHSEQTSETYRPNQDPAGSTIRSQQSSESTNVGTQNEGGVPGALSNQPPVPATAPV 350 Query: 311 NMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTE 370 P P ++ +K+ NYE++ ++RLS+AVVVN R+ + Sbjct: 351 TTPPAPPGATASPSRAPSSTRKDATINYEVDKTIQHVRKPVGGIKRLSVAVVVNHRRVVD 410 Query: 371 VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 G + + + ++I +V A G + RGDT+ + + F Sbjct: 411 ENGVVSAKPLSEVEKSQITDLVKEAVGFSRERGDTLNVVNSHF 453 >gi|300931151|ref|ZP_07146498.1| flagellar M-ring protein FliF [Escherichia coli MS 187-1] gi|300461008|gb|EFK24501.1| flagellar M-ring protein FliF [Escherichia coli MS 187-1] Length = 507 Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 112/395 (28%), Positives = 187/395 (47%), Gaps = 38/395 (9%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSS 105 P Y L+ L D I L++ NI +R S+ +I VP+ V + R+ LA QGLP Sbjct: 1 PDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKG 60 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 + G+EL D+ FG++ F +++ RALEGE++RTI++I + ARVH+ MP F Sbjct: 61 GA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFV 118 Query: 166 KIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEM 222 + P+ASV + + + AI HLV++A+ L G+VT++D G LLT +N Sbjct: 119 REQKSPSASVTVNLLPGRALDEGQISAIVHLVSSALAGLPPGNVTLVDQGGHLLTQSNTS 178 Query: 223 ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS 282 R++ L ++ I+ I L+ +G N + V A+L+ +++ E Y P+ Sbjct: 179 GRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNG 238 Query: 283 KVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ---- 335 + S+ SE S P N P ++ P+ N + +++Q Sbjct: 239 DESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPAN-NAPISTPPANQNNRQQQASTT 297 Query: 336 -------------SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI- 381 SNYE++ T + ++RLS+AVVVN L + GK Sbjct: 298 SNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPD--------GKPL 349 Query: 382 ---DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 + + +I + A G + +RGD++ + + F Sbjct: 350 PLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 384 >gi|58038899|ref|YP_190863.1| flagellar MS-ring protein [Gluconobacter oxydans 621H] gi|58001313|gb|AAW60207.1| Flagellar M-ring protein FliF [Gluconobacter oxydans 621H] Length = 482 Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 109/339 (32%), Positives = 177/339 (52%), Gaps = 19/339 (5%) Query: 85 VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144 VP V +AR+ LA GLPS S GYE+FDK NSF T F Q I RALEGE+ R+I+ Sbjct: 2 VPDDDVARARLLLAQSGLPSGGS-VGYEIFDKGNSFTATQFEQTINETRALEGELERSIR 60 Query: 145 SISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAV 199 I G+ ARVH+V+ F ASV++ R ++ +S A+ +LV+AAV Sbjct: 61 LIHGVRNARVHLVLRHRELFSTDEQNAQASVLLSMDGGRRLD---EESIAAVVNLVSAAV 117 Query: 200 PNLDMGDVTVLDSTGK-LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNF 258 P LD +++++D+ G LL E N + Q I+ I + L + LG + Sbjct: 118 PGLDAHNISLIDNRGHVLLKQGEGNSNGGQSAEEQRQLIEQRIAREVEDLLGSSLGPGHV 177 Query: 259 RSAVVAELNMDTQQIREIV--YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVS 316 R V A + M+ +RE YDPD +V RS + ++S +Q + TV N+P+ + Sbjct: 178 R--VEANVTMNNDHVRETQENYDPDQQVLRSQQTK--TEKSINTQGSTNTTVSNNLPNAN 233 Query: 317 DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA 376 + ++ ++++E+ +NYEI+ D ++ R+S+AV+V+ ++ G ++ Sbjct: 234 AGQ---QQNGSQSNRQEQTNNYEISKTVRTLVQDQPRIARISMAVMVDGISQSDGKGHAS 290 Query: 377 DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 Q + L + + +A G + RGD +T+ SM F + Sbjct: 291 WQPRNQEELGRLTALTKSAVGFDQSRGDVVTVMSMKFTD 329 >gi|238758092|ref|ZP_04619272.1| Flagellar M-ring protein [Yersinia aldovae ATCC 35236] gi|238703630|gb|EEP96167.1| Flagellar M-ring protein [Yersinia aldovae ATCC 35236] Length = 569 Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 125/463 (26%), Positives = 213/463 (46%), Gaps = 58/463 (12%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + SP Y LY L D I L++ NI +R +DNG ++ VP+ V + R+ LA Q Sbjct: 46 LWAKSPDYRVLYSNLSDRDGGDIVTQLTQLNIPYRFADNGGALLVPAEKVHETRLRLAQQ 105 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F ++I RALEGE++RTI ++ ++ RVH+ MP Sbjct: 106 GLPKGGA-VGFELLDQ-EKFGISQFSEQINYQRALEGELSRTIGTLGPVMNVRVHLAMPK 163 Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + PTASV + A+ P AI ++V+++V L G+VTV+D G+LL Sbjct: 164 PSLFVREQKSPTASVTL-ALQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQMGRLL 222 Query: 218 T-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 T ++ R++ L +++ + I LA +G N + V A+++ ++ + Sbjct: 223 TQSDSAGRDLNAAQLKFTNEVENRFQRRIENILAPMVGNGNVHAQVTAQVDFANREQTDE 282 Query: 277 VYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLP------------- 323 Y P+ + S+ SE + T +P + P+ Sbjct: 283 EYKPNQDANQGAVRSQQVSTSE----QLGGTNVGGVPGALSNQPPIAPVAPIEAPQAAPA 338 Query: 324 ------------RSLENTDKK----------EEQSNYEINTKSIATTHDNYKLERLSIAV 361 R T K ++ +N+E+N T ++RLS+AV Sbjct: 339 AGATANTANTANRPATTTAAKSSATSSNSRHDQTTNFEVNRTIRHTQQQAGMVQRLSVAV 398 Query: 362 VVNKG--RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 VVN G + + + + DQ LA++ + A G ++ RGDT+ + + F + Sbjct: 399 VVNYGSDKAGKPIALTKDQ------LAQVESLTREAMGFSTTRGDTLNVVNTPFSASD-- 450 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 ++G + F S F ++NA +L+ LLV ++ L R Sbjct: 451 DTGGHSLPFWQQPS-FFDQLLNAGRYLL-ILLVAWILWRKLVR 491 >gi|28869162|ref|NP_791781.1| flagellar M-ring protein FliF [Pseudomonas syringae pv. tomato str. DC3000] gi|213967561|ref|ZP_03395709.1| flagellar M-ring protein FliF [Pseudomonas syringae pv. tomato T1] gi|301385734|ref|ZP_07234152.1| flagellar MS-ring protein [Pseudomonas syringae pv. tomato Max13] gi|302059423|ref|ZP_07250964.1| flagellar MS-ring protein [Pseudomonas syringae pv. tomato K40] gi|302134812|ref|ZP_07260802.1| flagellar MS-ring protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28852402|gb|AAO55476.1| flagellar M-ring protein FliF [Pseudomonas syringae pv. tomato str. DC3000] gi|213927862|gb|EEB61409.1| flagellar M-ring protein FliF [Pseudomonas syringae pv. tomato T1] Length = 594 Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 151/604 (25%), Positives = 257/604 (42%), Gaps = 100/604 (16%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y LY L D +I L Sbjct: 24 LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + ANI++ + N ++ V S V +ARI LA G+ + +N G+E+ DK G + FM+ Sbjct: 84 TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINP 182 R LEGE+ARTI +++ + ARVH+ +P F + +P+ASV++ R++ P Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHE 240 S AI +LVA +VP L +TV+D G LL+ A E + GK + ++ Sbjct: 204 S---QVLAIINLVATSVPELSKSQITVVDQKGTLLSDQAENSELTMAGKQFDYSRRMEGM 260 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 + + L LG D +++ V A ++ + ++PD RS + S + QRS +S Sbjct: 261 LTQRVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQ-SVNEQRSSSS 319 Query: 301 -----------QPESAVT----------------------VEQNMPHVSDRKVPLPRSLE 327 QP T ++ N + D P Sbjct: 320 STGGVPGALSNQPPGPATAPQNAAAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAP 379 Query: 328 NTDKKEEQS--NYEINTKSIATTHDNYKLERLSIAVVVN--------KGRLTEVLGRSAD 377 K QS N+E++ T +L RLS+AVVV+ G ++ +AD Sbjct: 380 YPADKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVSRAPWSAAD 439 Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF-------LENQLFNSGTVQVSFMD 430 LA ++V A G ++ RGD++++ ++ F L F S Q F D Sbjct: 440 -------LARFTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYS---QPWFWD 489 Query: 431 ILSRHFATVINALVFLVGTLLVTFLGLHALRR-LHNIDDAKKGEV---GGKSILSPPPIS 486 I+ + VG + + L LR L+NI K E+ GG + L Sbjct: 490 IVKQA-----------VGVIFILILVFGVLRPVLNNITSGKSKELAGFGGDAELG----G 534 Query: 487 SAVTTGLMPNDNIALDSSNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545 G + ND ++L + S + +++N+ S ++ + R A++ Sbjct: 535 MGGLDGELSNDRVSLGGPQSILLPSPTEGYDAQLNAIKS---------LVAEDPGRVAQV 585 Query: 546 LRKW 549 +++W Sbjct: 586 VKEW 589 >gi|260432137|ref|ZP_05786108.1| flagellar M-ring protein FliF [Silicibacter lacuscaerulensis ITI-1157] gi|260415965|gb|EEX09224.1| flagellar M-ring protein FliF [Silicibacter lacuscaerulensis ITI-1157] Length = 531 Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 129/406 (31%), Positives = 202/406 (49%), Gaps = 18/406 (4%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 SL R + +I+A ++ + +A V SP LY LE I AL + + + Sbjct: 10 SLDRRKQIIVAGAAILVFLSVLAMSRVVTSPSMTLLYAGLEAGAAGDIVRALDQRGVTYE 69 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135 I G SI VP S + R+ LA++GLP++ N GYEL D ++ FG TS M + RA Sbjct: 70 I--RGGSIYVPVSKRDELRMTLASEGLPANG-NRGYELLDSLSGFGTTSQMFDAAYWRAK 126 Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV-YKSAEAIRHL 194 EGE+ARTI S + ARVHI F++ A PTASV + V + A+AIR L Sbjct: 127 EGELARTIVSSPHVSQARVHIANGSSNPFQRSVA-PTASVYLVPAGARVTVEQAKAIRFL 185 Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLG 254 VA+AV L DV V+DS G ++ E ++ + +A + + + A +G Sbjct: 186 VASAVTGLAPEDVAVIDSNGAVIGPQEA---VVATDTADDKARLL--RERVLRLVEARVG 240 Query: 255 VDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA-VTVEQNMP 313 N V + +T+ IRE +DP +V S + +RS++S+ +S+ VTV N+P Sbjct: 241 PGNAVVEVSVDTVTETESIRERRFDPKGRVAISTDIE---ERSDSSRNQSSDVTVASNLP 297 Query: 314 HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373 S + E+ NYE++ + ++RL++AV+VN R + G Sbjct: 298 D--GDAAGGDESNSTATQTRERVNYEVSETELEVHRVPGAIKRLTVAVIVNGTRTVDASG 355 Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF--LENQ 417 + + L + ++V++A G ++ RGD IT+ SM+ LE Q Sbjct: 356 TPVFEPMPEPELEALQELVASAVGFDAERGDVITLKSMELPDLEPQ 401 >gi|322833196|ref|YP_004213223.1| flagellar M-ring protein FliF [Rahnella sp. Y9602] gi|321168397|gb|ADW74096.1| flagellar M-ring protein FliF [Rahnella sp. Y9602] Length = 569 Score = 147 bits (370), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 141/558 (25%), Positives = 251/558 (44%), Gaps = 81/558 (14%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y L+ L D I L++ NI ++ SDNG ++ +P+ V + R+ LAA Sbjct: 46 LWAKQPTYKVLFSNLGDQDGGAIVTQLTQMNIPYQFSDNGGALLIPADKVYETRLKLAAA 105 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F ++I RALEGE++RTI+++ + +ARVH+ +P Sbjct: 106 GLPKGGA-VGFELMDQ-EKFGISQFSEQINYQRALEGELSRTIETLGPVSSARVHLAIPK 163 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + P+ASV + RA++ AI ++V+++V L +VTV+D +G Sbjct: 164 PSLFVREQKNPSASVTLNLQPGRALDDG---QINAIVYMVSSSVSGLPPANVTVVDQSGH 220 Query: 216 LLTANEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT ++ R++ L ++ ++ I L +G N + + A+++ +++ Sbjct: 221 LLTQSDNNGRDLNASQLKYANEVEGRLQRRIESILQPVVGNGNVHAQITAQIDYASREQT 280 Query: 275 EIVYDPDSKVE----RSIRLSKDAQRSETS----------QPESAVTVEQNMPHVSDR-- 318 + Y P+ + RS +LS Q +S QP A T P ++ Sbjct: 281 DENYQPNGSADKAAVRSRQLSTSDQIGASSVGGVPGALSNQPAPAATAPVTNPPAANNAN 340 Query: 319 -------------------KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 VP R +++E +NYE++ T H ++RLS Sbjct: 341 GTQNQTGNNAQNAATTANANVPSNR------RRDETTNYEVDRTITHTQHSAGAVQRLSA 394 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AVVVN +V + D L +I+ +V A G + RGDT+ + + F E Sbjct: 395 AVVVN----YQVGPDGKAKPLTDDQLKKIDDLVREAMGFSQERGDTLNVVNTPFNE-AAD 449 Query: 420 NSGTV----QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 +SG + Q +F D L +NA +L+ ++ L +R + A+K Sbjct: 450 DSGELPFWKQQAFFDQL-------LNAGRWLLVLIVAWLLWRKMVRPMLRKQQAEKDAAA 502 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 ++ T P + + SN ++ R+ Q R++ V Q R+ + Sbjct: 503 ---------AAALAATMPQPEGSKPVKLSNDELEKRKRS-QQRVSVEVQTQ---RVQELA 549 Query: 536 EINEERFAKILRKWARSE 553 + + A ++R+W +E Sbjct: 550 DKDPRIVALVIRQWMSTE 567 >gi|315126013|ref|YP_004068016.1| flagellar MS-ring protein FliF [Pseudoalteromonas sp. SM9913] gi|315014527|gb|ADT67865.1| flagellar MS-ring protein FliF [Pseudoalteromonas sp. SM9913] Length = 575 Score = 147 bits (370), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 139/479 (29%), Positives = 235/479 (49%), Gaps = 48/479 (10%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L L F SG T I +LA+++ I+L + + ++ +Y LY E D I Sbjct: 23 LSNKLNFGSSGDRSVAT-IALLATLVAATIVLIL----WTSAKNYVPLYGNQESYDKANI 77 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L + I FRI + +I VP + ARI LAA+G+ +S + DKV S G + Sbjct: 78 LEILDKEQITFRIDTDSGNILVPQEKLADARITLAARGIKASMPEGIENISDKV-SMGTS 136 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMI----- 177 F++ + ALEGE+ARTI ++ GI ARVH+ +P F + + ASVM+ Sbjct: 137 QFIESMQYQHALEGELARTIINMQGIRNARVHLAVPKRSLFVGRTEQKTAASVMVDLAPG 196 Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS----LSI 233 + P + EAI L+ +VP LD V+V+D GKLL+ + + +GK L+ Sbjct: 197 HELKP---EQVEAIIALIIGSVPGLDSRSVSVVDQRGKLLSGDLFDTTPVGKETDKKLAF 253 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPDSKVERSIRLSK 292 ++ ++ IE + L LG NFR V ++++ ++ RE+V DP + L++ Sbjct: 254 IEKVERNIEQRASIMLLPILGEGNFRIQVSSDVDFSVVEETREMV-DPQNV------LTQ 306 Query: 293 DAQRSETSQPESAVTVE---QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 + +S+++ + A + N P V + + + + + E + +E N +S+ TH Sbjct: 307 EFIKSDSTLDQLAAGIPGSLANEPPVPNEQAEDENNERTSQRSESKRQFE-NGRSV--TH 363 Query: 350 DNYKLER---LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 +++ R +S++V++N E + +AD G + LA + ++V ATG N RGD Sbjct: 364 TQFEVGRIKNMSLSVLIN-----EQVAGTAD-GWSEEKLASLGEMVKKATGFNDARGDQF 417 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465 ITS F+E ++ G + + +A ++VGTL+ L L +R L N Sbjct: 418 NITSFAFVEQKILAPGEGLEWWQMPELKEYAR------YIVGTLISLLLILFGVRPLVN 470 >gi|85058031|ref|YP_453733.1| flagellar basal-body M-ring protein FliF [Sodalis glossinidius str. 'morsitans'] gi|84778551|dbj|BAE73328.1| flagellar basal-body M-ring protein FliF [Sodalis glossinidius str. 'morsitans'] Length = 568 Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 123/422 (29%), Positives = 198/422 (46%), Gaps = 65/422 (15%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y LY + D + L+ NI +R + N +I VPS V + R+ LA + Sbjct: 47 LWARTPDYRILYSNISDQDGGAVVAELTTMNIPYRFAGNSDAIMVPSDRVHETRLLLAQK 106 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F ++I RALEGEIARTI++++ + +ARVHI MP Sbjct: 107 GLPKGGA-LGFELLDR-EKFGMSQFSEQINYQRALEGEIARTIKTLNPVKSARVHIAMPK 164 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + TASV + RA++ +AI LV+ VP+L G++T++DS G+ Sbjct: 165 PSLFVREHKPATASVTLTLYPGRALD---TGQIQAITWLVSGTVPDLPAGNITMVDSQGQ 221 Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LL E ++ L+ + ++ + + I+ LA +G N R+ V A+L+ + Sbjct: 222 LLAQPGNNELDLSTTQLAYTREVEGDFQRRISAILAPVIGAANVRAEVTAQLDFTAVEQT 281 Query: 275 EIVYDPDSKVE----RSIRLSKDAQ------------RSETSQPESAVTVEQNMPHVSDR 318 + P+ + E RS +LS Q S P + ++E + + Sbjct: 282 AEQHKPNGRPEEMAIRSQQLSASDQIGIQAPGGVPGALSNQPTPPATASIESPANAAAGK 341 Query: 319 K----------------VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK---LERLSI 359 K V PRS +N E+ NYE++ TH ++ ++RLS Sbjct: 342 KPASKDSVPPPAAAAPIVQPPRSSQN----EKTINYEVDR---TLTHSRFRPGVIKRLSG 394 Query: 360 AVVVNKGRLTEVLGRSADQGK----IDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 AVVVN R G + ++ +V A G +S RGDT+ I + F+ Sbjct: 395 AVVVND--------REDSNGNRVHLTPQEMQDVTALVREAMGFSSERGDTLNIVNTRFVA 446 Query: 416 NQ 417 NQ Sbjct: 447 NQ 448 >gi|331017004|gb|EGH97060.1| flagellar MS-ring protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 594 Score = 146 bits (369), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 153/603 (25%), Positives = 258/603 (42%), Gaps = 98/603 (16%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y LY L D +I L Sbjct: 24 LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGIDSKQIMDTL 83 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + ANI++ + N ++ V S V +ARI LA G+ + +N G+E+ DK G + FM+ Sbjct: 84 TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINP 182 R LEGE+ARTI +++ + ARVH+ +P F + +P+ASV++ R++ P Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHE 240 S AI +LVA +VP L +TV+D G LL+ A E + GK + ++ Sbjct: 204 S---QVLAIINLVATSVPELSKSQITVVDQKGTLLSDQAENSELTMAGKQFDYSRRMEGM 260 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 + + L LG D +++ V A ++ + ++PD RS + S + QRS +S Sbjct: 261 LTQRVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQ-SVNEQRSSSS 319 Query: 301 -----------QPESAVT----------------------VEQNMPHVSDRKVPLPRSLE 327 QP T ++ N + D P Sbjct: 320 STGGVPGALSNQPPGPATAPQNAAAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAP 379 Query: 328 NTDKKEEQS--NYEINTKSIATTHDNYKLERLSIAVVVN--------KGRLTEVLGRSAD 377 K QS N+E++ T +L RLS+AVVV+ G ++ +AD Sbjct: 380 YPADKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVSRAPWSAAD 439 Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF-------LENQLFNSGTVQVSFMD 430 LA ++V A G ++ RGD++++ ++ F L F S Q F D Sbjct: 440 -------LARFTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYS---QPWFWD 489 Query: 431 ILSRHFATVINALVFLVGTLLVTFLGLHALRR-LHNIDDAKKGEV---GGKSILSPPPIS 486 I+ + VG + + L LR L+NI K E+ GG + L Sbjct: 490 IVKQA-----------VGVIFILILVFGVLRPVLNNITSGKSKELAGFGGDAELG----G 534 Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546 G + ND ++L Q I L S Y ++ + ++ ++ + R A+++ Sbjct: 535 MGGLDGELSNDRVSL-GGPQSIL-----LPSPTEGYDAQLNAIK--SLVAEDPGRVAQVV 586 Query: 547 RKW 549 ++W Sbjct: 587 KEW 589 >gi|302342347|ref|YP_003806876.1| flagellar M-ring protein FliF [Desulfarculus baarsii DSM 2075] gi|301638960|gb|ADK84282.1| flagellar M-ring protein FliF [Desulfarculus baarsii DSM 2075] Length = 560 Score = 146 bits (369), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 114/403 (28%), Positives = 201/403 (49%), Gaps = 51/403 (12%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++N P Y L+ L D +++ L + +D+++ G++I VP V +AR+ LA+ Sbjct: 60 LWLNQPDYQTLFSGLSQQDASQVVNQLKDMKLDYKLESGGTTILVPEESVYEARLTLASA 119 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP ++ G+E+F++V G T F+Q I RAL+GE+ARTI S + ARVHIV+P Sbjct: 120 GLPRGTAGVGFEVFNEVQ-MGATDFVQRINYQRALQGELARTISSFGEVEDARVHIVLPR 178 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + +P+A+V++R + + + HLVA +VP+L VT++D+ G LL Sbjct: 179 ESLFVEDEKKPSAAVVVRLARGQSLSAGQIAGVVHLVAGSVPDLTDDRVTIVDTNGNLLY 238 Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAA--------FLGVDNFRSAVVAELNMDT 270 +++ +L+ A Q + + N+ + A LG V A+++ Sbjct: 239 RKDVDTADFPAALT---ASQLDYQKNLERGFVAKVQSMLEEVLGPGRAVVRVNADIDFTR 295 Query: 271 QQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVS-DRKVPL------P 323 + ++DPD + A RSET + ++ NMP S D++ L P Sbjct: 296 TSTTQDLFDPD----------QVAVRSETRASDKSIN-SGNMPIGSPDQRFTLAEANANP 344 Query: 324 RSLEN---TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN---------KGRLTEV 371 +N TD + E +NYEI+ L+RL++AV+++ +G T Sbjct: 345 EEGQNQSKTDTENETTNYEISRTQKQVQKAIGGLQRLTVAVMIDGPYKDAADAEGNTTRS 404 Query: 372 LG-RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 RSA++ + ++ ++V A G +++RGD +T+ ++ F Sbjct: 405 FAPRSAEE------MQQLTELVRRAVGYDAQRGDQVTLANIPF 441 >gi|330876010|gb|EGH10159.1| flagellar MS-ring protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330967111|gb|EGH67371.1| flagellar MS-ring protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 594 Score = 146 bits (369), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 150/604 (24%), Positives = 257/604 (42%), Gaps = 100/604 (16%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y LY L D +I L Sbjct: 24 LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + ANI++ + N ++ V S V +ARI LA G+ + +N G+E+ DK G + FM+ Sbjct: 84 TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINP 182 R LEGE+ARTI +++ + ARVH+ +P F + +P+ASV++ R++ P Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHE 240 S AI +LVA +VP L +TV+D G LL+ A E + GK + ++ Sbjct: 204 S---QVLAIINLVATSVPELSKSQITVVDQKGTLLSDQAENSELTMAGKQFDYSRRMEGM 260 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 + + L LG D +++ V A ++ + ++PD RS + S + QRS +S Sbjct: 261 LTQRVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQ-SVNEQRSSSS 319 Query: 301 -----------QPESAVT----------------------VEQNMPHVSDRKVPLPRSLE 327 QP T ++ N + D P Sbjct: 320 STGGVPGALSNQPPGPATAPQNAAAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAP 379 Query: 328 NTDKKEEQS--NYEINTKSIATTHDNYKLERLSIAVVVN--------KGRLTEVLGRSAD 377 K QS N+E++ T +L RLS+AVVV+ G ++ +AD Sbjct: 380 YPADKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVSRAPWSAAD 439 Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF-------LENQLFNSGTVQVSFMD 430 LA ++V A G ++ RGD++++ ++ F L F + Q F D Sbjct: 440 -------LARFTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYT---QPWFWD 489 Query: 431 ILSRHFATVINALVFLVGTLLVTFLGLHALRR-LHNIDDAKKGEV---GGKSILSPPPIS 486 I+ + VG + + L LR L+NI K E+ GG + L Sbjct: 490 IVKQA-----------VGVIFILILVFGVLRPVLNNITSGKSKELAGFGGDAELG----G 534 Query: 487 SAVTTGLMPNDNIALDSSNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545 G + ND ++L + S + +++N+ S ++ + R A++ Sbjct: 535 MGGLDGELSNDRVSLGGPQSILLPSPTEGYDAQLNAIKS---------LVAEDPGRVAQV 585 Query: 546 LRKW 549 +++W Sbjct: 586 VKEW 589 >gi|254510010|ref|ZP_05122077.1| flagellar M-ring protein FliF [Rhodobacteraceae bacterium KLH11] gi|221533721|gb|EEE36709.1| flagellar M-ring protein FliF [Rhodobacteraceae bacterium KLH11] Length = 530 Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 136/452 (30%), Positives = 220/452 (48%), Gaps = 28/452 (6%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 SL R + +I+A + + + +A V +P LY LE I AL + + + Sbjct: 10 SLDRRKQIIVAGAVALVFLGVLAMSRIVTAPSMTLLYAGLESGAAGDIVRALDQRGVAYE 69 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135 I G SI VP + + R+ LA++G+P++ N GYEL D ++ FG TS M + RA Sbjct: 70 I--RGGSIYVPGAQRDELRLTLASEGMPANG-NRGYELLDSLSGFGTTSQMFDAAYWRAK 126 Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY-KSAEAIRHL 194 EGE+ARTI + ARVHI F++ A PTASV + + A+AIR L Sbjct: 127 EGELARTIVGSPYVSQARVHIANGSANPFQRSVA-PTASVYLVPSGAQITGDQAKAIRFL 185 Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLG 254 VA+A+ L +VTV+DS G ++ A E + ++ + + + A +G Sbjct: 186 VASAISGLAPENVTVVDSNGAVIGAQETA-----AAADTADDKARQLREKVLRLVEARVG 240 Query: 255 VDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA-VTVEQNMP 313 N V + T+ IRE +DP +V S + +RS+ ++ +S+ VTV N+P Sbjct: 241 TGNAVVEVSVDTVTKTESIRERRFDPKGRVAISTDVE---ERSDNTRNQSSDVTVASNLP 297 Query: 314 HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373 S N + E+ NYE++ + ++RL++AV+VN R+ + G Sbjct: 298 DGDGAGGDETNS--NATQTRERVNYEVSETELEVHRAPGAIKRLTVAVLVNGARMVDGNG 355 Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF--LENQ--LFNSGTVQVSFM 429 + + L + ++V++A G ++ RGD IT+ S+D +E Q L ++ Q + Sbjct: 356 IESFEPMPQPELDALEELVASAVGFDADRGDVITLKSLDLPAVEPQGTLASASIWQRIHL 415 Query: 430 DILSRHFATVINALVFLVGTLLVTFLGLHALR 461 D +S V+ ALV LV LGL +R Sbjct: 416 DAMSLIQMAVL-ALVSLV-------LGLFVIR 439 >gi|70729030|ref|YP_258764.1| flagellar MS-ring protein [Pseudomonas fluorescens Pf-5] gi|68343329|gb|AAY90935.1| flagellar M-ring protein FliF [Pseudomonas fluorescens Pf-5] Length = 595 Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 139/572 (24%), Positives = 249/572 (43%), Gaps = 86/572 (15%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92 + + A + P Y LY L D ++ L+ A+I + + N ++ V + + + Sbjct: 50 VAIGFAVVLWSQQPDYRPLYGSLAGMDAKQVMDTLASADIPYTVEPNSGALLVKADDLSR 109 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 AR+ LAA G+ N G+E+ DK G + FM+ R LEGE+ARTI S++ + A Sbjct: 110 ARLKLAAAGVAPGDGNVGFEILDKEQGLGTSQFMEATRYRRGLEGELARTISSLNNVKGA 169 Query: 153 RVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDV 207 RVH+ +P F + +P+ASV++ R++ P AI +LVA +VP L+ V Sbjct: 170 RVHLAIPKSSVFVRDERKPSASVLVELYSGRSLEPG---QVMAIVNLVATSVPELNKSQV 226 Query: 208 TVLDSTGKLLTANEMERNIL---GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVA 264 TV+D G LL+ ++ E + L GK + ++ + ++ L LG D +++ V A Sbjct: 227 TVVDQKGNLLS-DQAENSALTMAGKQFDYSRRLEGMLTQRVHNILQPVLGNDRYKAEVSA 285 Query: 265 ELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP----------- 313 +++ + ++PD RS + S + QRS ++ P+ N P Sbjct: 286 DVDFSAVESTSEQFNPDQPALRSEQ-SVNEQRSSSNGPQGVPGALSNQPPAPASAPQTTG 344 Query: 314 ---------------------HVSDRKVPLPRSLENTDKKEEQS--NYEINTKSIATTHD 350 + D P K +QS N+E++ T Sbjct: 345 GATAAAGMVQPGQPLLDANGQQIMDPATGQPMLAPYPSDKRQQSTKNFELDRSISHTKQQ 404 Query: 351 NYKLERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 +L RLS+AVVV ++ ++ G ++ LA ++V A G ++ RGD++++ Sbjct: 405 QGRLNRLSVAVVVDDQVKVNPANGETSRAPWSADELARFTRLVQDAVGFDASRGDSVSVI 464 Query: 410 SMDF-------LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL---LVTFLGLHA 459 ++ F + + F S Q F DI+ + V+ LV + G L L G Sbjct: 465 NVPFSAERGEVIADIPFYS---QPWFWDIV-KQVLGVLFILVLVFGVLRPVLNNITGGGK 520 Query: 460 LRRLHNI-DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF-SHSRNLQS 517 + L + D + G +GG G + ND ++L + S S + Sbjct: 521 NKELAGLGSDVELGGMGG-------------LDGELGNDRVSLGGPQSILLPSPSEGYDA 567 Query: 518 RINSYVSKQSDLRLLHMIEINEERFAKILRKW 549 ++N+ S ++ + R A+++++W Sbjct: 568 QLNAIKS---------LVAEDPGRVAQVVKEW 590 >gi|162147460|ref|YP_001601921.1| flagellar MS-ring protein [Gluconacetobacter diazotrophicus PAl 5] gi|161786037|emb|CAP55619.1| putative flagellar M-ring protein [Gluconacetobacter diazotrophicus PAl 5] Length = 547 Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 120/424 (28%), Positives = 210/424 (49%), Gaps = 26/424 (6%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110 LY +++ + + L++A+I S +G+SI VP V AR+ LA GLPS + G Sbjct: 45 LYGDVDLGEAAEMIDDLAKAHISSTTSPDGTSIYVPRDKVASARLLLAKDGLPSGGA-VG 103 Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170 YELFDK + T F Q I RA+EGE+ R+I+ + G+ RVH+V+P F + Sbjct: 104 YELFDKSGTLTSTQFEQTINETRAMEGELERSIRLVHGVRNVRVHLVLPHRDLFSTQTSP 163 Query: 171 PTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG 228 ASV+ I +AI++LVAAAVP L +++++D+ G +L + G Sbjct: 164 SQASVVLDIGRAGRMAPDGIQAIQNLVAAAVPGLRPQNISIVDTRGDVLVKPGDPDSAAG 223 Query: 229 KSLSIVQAIQHEIE----MNINKALAAFLGVDNFRSAVVAELNMDTQQIREI--VYDPDS 282 + S ++ +QH E ++ L LG + R+ A + M T +I E YDP+ Sbjct: 224 QE-STIEKLQHAEEQRLAQDVEDMLVPTLGAGHVRAR--AAVTMATDEIHETDESYDPNQ 280 Query: 283 KVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINT 342 +V RS + + D + + P + TV N+P+ + + ++ + D++E+ +NYEI Sbjct: 281 QVLRSEQTTSDKSVNTEASPNT--TVSNNLPNANANQD--NKTGSSDDREEDTNNYEIGK 336 Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402 + + ++ R+S+AV+V+ + G+ Q + + I + A G + R Sbjct: 337 RVRVISQTRPRVSRISLAVMVDGMVTRDKNGKDVWQPLDTAEIQNITTLAKTAIGYDQSR 396 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSR----HFATVINALVFLVGTLLVTFLGLH 458 GD + + SM F+ + T S +LSR + A + ++ +G + F+G+ Sbjct: 397 GDEVNVVSMRFMPDGGLGFPT---STGSVLSRDTLIYIAEWVIPIILALGAI---FIGIR 450 Query: 459 ALRR 462 + R Sbjct: 451 PMLR 454 >gi|209545569|ref|YP_002277798.1| flagellar MS-ring protein [Gluconacetobacter diazotrophicus PAl 5] gi|209533246|gb|ACI53183.1| flagellar M-ring protein FliF [Gluconacetobacter diazotrophicus PAl 5] Length = 547 Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 120/424 (28%), Positives = 210/424 (49%), Gaps = 26/424 (6%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110 LY +++ + + L++A+I S +G+SI VP V AR+ LA GLPS + G Sbjct: 45 LYGDVDLGEAAEMIDDLAKAHISSTTSPDGTSIYVPRDKVASARLLLAKDGLPSGGA-VG 103 Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170 YELFDK + T F Q I RA+EGE+ R+I+ + G+ RVH+V+P F + Sbjct: 104 YELFDKSGTLTSTQFEQTINETRAMEGELERSIRLVHGVRNVRVHLVLPHRDLFSTQTSP 163 Query: 171 PTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG 228 ASV+ I +AI++LVAAAVP L +++++D+ G +L + G Sbjct: 164 SQASVVLDIGRAGRMAPDGIQAIQNLVAAAVPGLRPQNISIVDTRGDVLVKPGDPDSAAG 223 Query: 229 KSLSIVQAIQHEIE----MNINKALAAFLGVDNFRSAVVAELNMDTQQIREI--VYDPDS 282 + S ++ +QH E ++ L LG + R+ A + M T +I E YDP+ Sbjct: 224 QE-STIEKLQHAEEQRLAQDVEDMLVPTLGAGHVRAR--AAVTMATDEIHETDESYDPNQ 280 Query: 283 KVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINT 342 +V RS + + D + + P + TV N+P+ + + ++ + D++E+ +NYEI Sbjct: 281 QVLRSEQTTSDKSVNTEASPNT--TVSNNLPNANANQD--NKTGSSDDREEDTNNYEIGK 336 Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402 + + ++ R+S+AV+V+ + G+ Q + + I + A G + R Sbjct: 337 RVRVISQTRPRVSRISLAVMVDGMVTRDKNGKDVWQPLDTAEIQNITTLAKTAIGYDQSR 396 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSR----HFATVINALVFLVGTLLVTFLGLH 458 GD + + SM F+ + T S +LSR + A + ++ +G + F+G+ Sbjct: 397 GDEVNVVSMRFMPDGGLGFPT---STGSVLSRDTLIYIAEWVIPIILALGAI---FIGIR 450 Query: 459 ALRR 462 + R Sbjct: 451 PMLR 454 >gi|134300247|ref|YP_001113743.1| flagellar MS-ring protein [Desulfotomaculum reducens MI-1] gi|134052947|gb|ABO50918.1| flagellar M-ring protein FliF [Desulfotomaculum reducens MI-1] Length = 521 Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 123/431 (28%), Positives = 208/431 (48%), Gaps = 43/431 (9%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +L++L Q ++ TS R ++IL S +++ ++++A + P+Y L LE D Sbjct: 6 LLERLKQRWQE-TSQNRKVLVILVSTVVLAGLVYLA--MTLTKPNYAILLGDLEPKDAGD 62 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L I +++ D G++I VP V + R+ LA+ GL + N G+ELFDK + FG Sbjct: 63 IVAQLESEKIPYQLIDQGTTILVPQEQVDEIRVKLASDGLLTGVGN-GFELFDK-SKFGE 120 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T F Q+I+ RAL+ E+ RTI + G+ ARVH+V+P F + +ASV+++ + P Sbjct: 121 TDFEQQISYQRALQEELRRTITKVEGVEQARVHLVLPRKSVFIEEEGTASASVVVK-LKP 179 Query: 183 SVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLLT----------ANEMERNILGK 229 AE ++ L+ +V L +V ++D+ G +L N IL + Sbjct: 180 RAKLKAEQVKGLNDLIIGSVEGLQAENVHIIDTEGNVLNDFLKDSSGTPGNGFSGTILER 239 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV-ERSI 288 I + + E+E + LA LG + + V AE++ + Q P V ERSI Sbjct: 240 QQQIRRTYEKELENRVQNMLAKVLGPNKAVAMVTAEMDFNQLQTNTTEVVPGQVVSERSI 299 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD--KKEEQSNYEINTKSIA 346 + ++ MP S +P S K ++ NY+ T++ + Sbjct: 300 K-----EQGSDGSGGGVTGSTTQMPGQS---IPAETSTSQNSYIKTDDTKNYQHGTRTQS 351 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 KL +LS AVV+++ + L R+ ++ KIV+AA G + +RGD I Sbjct: 352 EVQAPGKLIKLSTAVVLDES--VKNLDRT-----------QVEKIVTAAIGFDDQRGDQI 398 Query: 407 TITSMDFLENQ 417 T+++M F +Q Sbjct: 399 TVSAMTFDRSQ 409 >gi|88704287|ref|ZP_01102001.1| flagellar M-ring protein FliF [Congregibacter litoralis KT71] gi|88701338|gb|EAQ98443.1| flagellar M-ring protein FliF [Congregibacter litoralis KT71] Length = 574 Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 124/459 (27%), Positives = 211/459 (45%), Gaps = 36/459 (7%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 AI + L F + TR L L + I L M +V P+Y LY + D N Sbjct: 4 AIDNNLFNRFSGFSRQPATRQLALLIGLAASIALAMGMVQWVVEPNYKPLYGTMAPEDTN 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 + +L +D+R+ ++VP+ V +AR+ LA G P G+E + G Sbjct: 64 DVIASLEANGMDYRMDQRTGMVAVPAGEVHRARLLLAGDGYPRGE-GVGFESLYREQEIG 122 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI---- 177 L+SFM++ RALE E+ARTI ++ + ARVH+ M +F + +P ASVM+ Sbjct: 123 LSSFMEQARFHRALESELARTISALDNVRGARVHLAMAKQSAFLRQREQPAASVMLNLYA 182 Query: 178 -RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIV 234 R +N + I HLVA++VPNL+ V+V+D GKLL+ + E Sbjct: 183 GRTLND---RQLAGIIHLVASSVPNLESEQVSVVDQQGKLLSQQGRDDEFAFTQDQFQYT 239 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 + ++ + I L LG + R+ V A+++ + E Y PD++V RS + S++ Sbjct: 240 RQLESNLSARIVDILEPILGANAVRAQVAADVDFTRVERTEETYAPDTRV-RSEQTSEET 298 Query: 295 QRSE---------TSQP--ESAVTVEQNMPHVS-----------DRKVPLPRSLENTDKK 332 +++P ++ VT +Q P++ D L + Sbjct: 299 SNQPYGGGVPGTLSNEPPIDTTVTAQQAQPNLGANAGVNTGVNVDATAQLGAIPPARTSR 358 Query: 333 EEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKI 391 NYE++ K+I+ + L++LSIAVV++ T G + + + E+ + Sbjct: 359 RSTVNYEMD-KTISHVRETPGTLQKLSIAVVLDYIESTADDGTTTREPMPQERIDEVTSL 417 Query: 392 VSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMD 430 V A G ++ RGDT+++ S F+E ++ S ++ Sbjct: 418 VREAVGFDAARGDTVSVISASFVEAPAIEDAVIESSILE 456 >gi|213425006|ref|ZP_03357756.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 429 Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 113/373 (30%), Positives = 182/373 (48%), Gaps = 39/373 (10%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 44 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 103 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 104 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 161 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + P+ASV + RA++ A+ HLV++AV L G+VT++D +G Sbjct: 162 PSLFVREQKSPSASVTVTLEPGRALD---EGQISAVVHLVSSAVAGLPPGNVTLVDQSGH 218 Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT +N R++ L ++ I+ I L+ +G N + V A+L+ ++ Sbjct: 219 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 278 Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309 E Y P+ ++ S+ SE ++QP E+ + Sbjct: 279 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 338 Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369 QN P S NT ++ E SNYE++ T + +ERLS+AVVVN L Sbjct: 339 QNTPQTSTSTNSNNAGPRNT-QRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLA 397 Query: 370 E--VLGRSADQGK 380 + L +ADQ K Sbjct: 398 DGKPLPLTADQMK 410 >gi|160896087|ref|YP_001561669.1| flagellar M-ring protein FliF [Delftia acidovorans SPH-1] gi|160361671|gb|ABX33284.1| flagellar M-ring protein FliF [Delftia acidovorans SPH-1] Length = 566 Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 113/439 (25%), Positives = 211/439 (48%), Gaps = 41/439 (9%) Query: 15 TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF 74 T++ R L ++ ++ ++ AA F P Y L+ L D I LS+ N+ + Sbjct: 25 TAMDRGARLRWGAIAVLLVVALGAAAMFYRQPDYKVLFSNLSDKDGGAIVAQLSQMNVPY 84 Query: 75 RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134 R ++ G +I +PS V R+ LA QGLP S +G+EL + + FG+T F + + R Sbjct: 85 RYTEGGGAILIPSDRVHDVRLKLATQGLPKGSV-TGFELMEN-SKFGITQFQERLNFQRG 142 Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIR 192 LEGE+ R+IQ+++ + +ARVH+ +P+ F + +P+ASV++ V + I Sbjct: 143 LEGELTRSIQALAAVQSARVHLALPNQNGFFREQQKPSASVLLSLYPGRVLDRTQIAGIV 202 Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLT------ANEMERNILGKSLSIVQAIQHEIEMNIN 246 HLVA++VP + V++LD +GKLL+ AN ++ + L+ Q I+ + I Sbjct: 203 HLVASSVPEMAPTAVSILDDSGKLLSQSPDGNANAVDM----QQLNYTQQIEQQYVRRIL 258 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP----DSKVERSIRLSKDAQRSETSQP 302 + L +G +N ++ V AE++ + + P D+ V RS ++ + + QP Sbjct: 259 EILEPVVGKNNVKAQVSAEMDFSQTESTSEQHRPNQSSDAGVVRSQQVVESTGEQKPPQP 318 Query: 303 ESAVTVEQNMPHVS-----DRKVPLPRSLENTD------KKEEQSNYEINTKSIATTHDN 351 N P + + P P++ + + K+E +NYE++ T Sbjct: 319 TGIPGATSNQPPQNASAPVNGANPAPQAADGQNAARSASKRESITNYEVDKTVRHTRGST 378 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL------------AEINKIVSAATGIN 399 ++RL+ AVV+N + +A + + A++ +V G + Sbjct: 379 GSIKRLTAAVVINAPLVAAPAPAAAGAATDAATVAAAARGLTAAQQAQLLTLVRETVGYS 438 Query: 400 SRRGDTITITSMDFLENQL 418 + RGD++ + S F+++++ Sbjct: 439 AERGDSVNLVSTPFVQDEV 457 >gi|94269516|ref|ZP_01291482.1| Flagellar FliF M-ring protein [delta proteobacterium MLMS-1] gi|93451190|gb|EAT02103.1| Flagellar FliF M-ring protein [delta proteobacterium MLMS-1] Length = 511 Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 140/524 (26%), Positives = 239/524 (45%), Gaps = 51/524 (9%) Query: 45 SPHYDN--LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL 102 +P D L+ L D + L E NI +R+SD G++I VPS+ V + R+ LA +GL Sbjct: 25 APKLDEQVLFANLSQEDAAEVVERLREMNIPYRLSDTGNAIMVPSNQVHETRLALAGEGL 84 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162 P G+E+FD+V G T F+ + RAL+GE+ARTI+ I ARVHI P Sbjct: 85 P-RGGGVGFEVFDEVG-LGTTDFVNRLNLQRALQGELARTIRQFEQIQEARVHIATPRES 142 Query: 163 SFRKIGARPTASV--MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL--T 218 F + TASV +R + ++I +LV+ AVP L +T++D+ G+LL Sbjct: 143 VFIEDEKPVTASVSLRMRGRDQLSQHQIQSIVNLVSTAVPGLSDESITLVDTAGRLLYRK 202 Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 ++ + G L Q I+ + L +GV+ R++V A+++ + + E ++ Sbjct: 203 RGDIGPVLSGSQLEYQQNIEESARRKVESMLEEVVGVNRVRASVTADIDFNRVNLTEEIF 262 Query: 279 DPDSKVERSIRLSKDA-QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSN 337 DP+ +V RS ++ +A QR +Q + + +D S + + + N Sbjct: 263 DPEEQVVRSEQVITEADQRG--NQARGIPGAKGELATFADEGGGGADS--SYQRSDVTRN 318 Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKG--RLTEVLGRSADQ--GKIDSYLAEINKIVS 393 YEI+ ++ T ++RLS+AV+V+ R+T+ GR+ + + + + +++S Sbjct: 319 YEISRQTRQTQEMGGGIQRLSVAVMVDGTYERVTDEEGRTTMEYRPRSEEEMEYFERLIS 378 Query: 394 AATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVT 453 A G N RGD + + SM F + + + +++ A + L+ G +L Sbjct: 379 NAVGYNRDRGDQVEVVSMPFALSAITEPEEDPMDRWREMAQWLAMPLVYLLIAFGVMLFV 438 Query: 454 ---FLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFS 510 FL L A + L +AK+ S T G + D+ Sbjct: 439 VRPFLRLLAAKDL----EAKRA-------------SQRATVGRAEGEA----EDEDDLSM 477 Query: 511 HSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 R L + Y QSD +R A ++R+W R E+ Sbjct: 478 GPRGLSDQERIYRLAQSD----------PDRAADLVRRWLREEV 511 >gi|206890854|ref|YP_002248115.1| flagellar M-ring protein FliF [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742792|gb|ACI21849.1| flagellar M-ring protein FliF [Thermodesulfovibrio yellowstonii DSM 11347] Length = 505 Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 118/423 (27%), Positives = 206/423 (48%), Gaps = 26/423 (6%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 MAI D++ ++ ++ R L LA + L+ + + ++ Y LY L D Sbjct: 1 MAITDRVKTVLENIKNMPLNRKLALAGLTLIVFAIILTLFLWLPKQDYQVLYSNLSAEDA 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 + L E + +++ DN +I VPS V + R+ LA+QG+PS G+E+FDK Sbjct: 61 GNVINKLKEKKVPYQVKDN--AIYVPSQKVHELRLELASQGIPSGG-GVGFEIFDK-TQI 116 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLT F Q + +RAL+GE+ RTI+ + + RVHI +P+ F + PTASV+++ + Sbjct: 117 GLTEFSQRVNYIRALQGELQRTIKQLQEVDQVRVHIAIPEKSIFTEKEDHPTASVVLK-L 175 Query: 181 NPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS-LSIVQA 236 P S E +I HLV+++V L VTV+D G LL+A + + + + + Sbjct: 176 KPGRALSKEQVSSIVHLVSSSVEGLSPQYVTVVDQYGNLLSAPKDSTQLAEATHIEYKRN 235 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 I+ E NI L +G V A+++ + E YDPD+ A R Sbjct: 236 IEKTYEKNIQSMLENIVGKGKAIVRVSADIDFSKVEKVEEKYDPDT----------IAIR 285 Query: 297 SETSQPESAVTVEQ-NMPHVSDRKVPLPRS-----LENTDKKEEQSNYEINTKSIATTHD 350 +E E ++ +Q +P V + P++ + K++E NYE++ Sbjct: 286 NEQRTQEKTMSPQQGGIPGVLSNQPGQPQTGATQQNIQSQKQQESINYEVSKSISKILQS 345 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 +++++S+AV+++ G E G+ + D + + ++V A+ G N RGD + + S Sbjct: 346 TGQIKKISVAVLID-GIYKEEKGKKVYVPRSDEEIKKYQELVQASIGYNKERGDYVIVES 404 Query: 411 MDF 413 + F Sbjct: 405 IPF 407 >gi|94264093|ref|ZP_01287892.1| Flagellar FliF M-ring protein [delta proteobacterium MLMS-1] gi|93455509|gb|EAT05699.1| Flagellar FliF M-ring protein [delta proteobacterium MLMS-1] Length = 530 Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 140/524 (26%), Positives = 239/524 (45%), Gaps = 51/524 (9%) Query: 45 SPHYDN--LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL 102 +P D L+ L D + L E NI +R+SD G++I VPS+ V + R+ LA +GL Sbjct: 44 APKLDEQVLFANLSQEDAAEVVERLREMNIPYRLSDTGNAIMVPSNQVHETRLALAGEGL 103 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162 P G+E+FD+V G T F+ + RAL+GE+ARTI+ I ARVHI P Sbjct: 104 P-RGGGVGFEVFDEVG-LGTTDFVNRLNLQRALQGELARTIRQFEQIQEARVHIATPRES 161 Query: 163 SFRKIGARPTASV--MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL--T 218 F + TASV +R + ++I +LV+ AVP L +T++D+ G+LL Sbjct: 162 VFIEDEKPVTASVSLRMRGRDQLSQHQIQSIVNLVSTAVPGLSDESITLVDTAGRLLYRK 221 Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 ++ + G L Q I+ + L +GV+ R++V A+++ + + E ++ Sbjct: 222 RGDIGPVLSGSQLEYQQNIEESARRKVESMLEEVVGVNRVRASVTADIDFNRVNLTEEIF 281 Query: 279 DPDSKVERSIRLSKDA-QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSN 337 DP+ +V RS ++ +A QR +Q + + +D S + + + N Sbjct: 282 DPEEQVVRSEQVITEADQRG--NQARGIPGAKGELATFADEGGGGADS--SYQRSDVTRN 337 Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKG--RLTEVLGRSADQ--GKIDSYLAEINKIVS 393 YEI+ ++ T ++RLS+AV+V+ R+T+ GR+ + + + + +++S Sbjct: 338 YEISRQTRQTQEMGGGIQRLSVAVMVDGTYERVTDEEGRTTMEYRPRSEEEMEYFERLIS 397 Query: 394 AATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVT 453 A G N RGD + + SM F + + + +++ A + L+ G +L Sbjct: 398 NAVGYNRDRGDQVEVVSMPFALSAITEPEEDPMDRWREMAQWLAMPLVYLLIAFGVMLFV 457 Query: 454 ---FLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFS 510 FL L A + L +AK+ S T G + D+ Sbjct: 458 VRPFLRLLAAKDL----EAKRA-------------SQRATVGRAEGEA----EDEDDLSM 496 Query: 511 HSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 R L + Y QSD +R A ++R+W R E+ Sbjct: 497 GPRGLSDQERIYRLAQSD----------PDRAADLVRRWLREEV 530 >gi|126463732|ref|YP_001044846.1| flagellar MS-ring protein [Rhodobacter sphaeroides ATCC 17029] gi|126105396|gb|ABN78074.1| flagellar M-ring protein FliF [Rhodobacter sphaeroides ATCC 17029] Length = 542 Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 127/450 (28%), Positives = 223/450 (49%), Gaps = 27/450 (6%) Query: 18 GRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS 77 GR R +++++ + + + + F P LY L+ + AL + + Sbjct: 27 GRRRAVVVSATVAM-FLAVLGLSQFAGRPPMALLYAGLQGPAAGEVVTALEAQGAAYEV- 84 Query: 78 DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137 G S+ V ++ + R+ LA +GLP++ + +GYEL D ++ FG TS M + +RA EG Sbjct: 85 -RGDSVYVEAARRDEIRMKLAGEGLPATGA-AGYELLDGLSGFGTTSQMFDAAYLRAKEG 142 Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVA 196 E+ARTI + + AARVHI P FR+ RPTASV + +V A A +HLVA Sbjct: 143 ELARTILASPKVKAARVHIAQPAAQPFRRE-QRPTASVTVTTSGGAVTADQARAFKHLVA 201 Query: 197 AAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVD 256 +AV L DV+V+DS L+ + + E++ + + ++ E+ N+ + L A +G Sbjct: 202 SAVAGLQPEDVSVIDSVMGLIRSGD-EKD---SATAAGESRAAELRSNVERLLEARVGPG 257 Query: 257 NFRSAVVAELNMDTQQIREIV----YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNM 312 V E+++D + RE + +DP +V I + S +++P VTV N+ Sbjct: 258 R----AVVEVSVDVETARESIVEKSFDPKGRV--PISSETQEKSSNSTEPSPDVTVASNL 311 Query: 313 PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372 P + +S +T + E N+E++ + RL++AV+V+ + Sbjct: 312 PEGDAKGGTGGKS--STSETRETVNFEVSQTQRELMRQPGAIRRLTVAVLVDGIKTVADD 369 Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDIL 432 G + + + LA + ++VS+A G++ RGD +T+ S+ F +GT ++ L Sbjct: 370 GTVGWEPRPEEELAVLRELVSSAVGLDESRGDRLTLRSLAF--ETPPEAGT--LAETGFL 425 Query: 433 SRHFATVINALVFL-VGTLLVTFLGLHALR 461 SR A + +L+ + V L+ LGL +R Sbjct: 426 SRLGAFDLMSLIQIGVLALVALILGLFVVR 455 >gi|124265758|ref|YP_001019762.1| flagellar biosynthesis lipoprotein [Methylibium petroleiphilum PM1] gi|124258533|gb|ABM93527.1| flagellar biosynthesis lipoprotein [Methylibium petroleiphilum PM1] Length = 567 Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 116/424 (27%), Positives = 197/424 (46%), Gaps = 35/424 (8%) Query: 18 GRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS 77 GR L + LV I M+ + + +Y LY L D I LS N+ ++ + Sbjct: 31 GRKFTLGIGLAALVGIAFAMS--MWSSQGNYKVLYAGLSDKDGGAILAQLSTMNVPYKHA 88 Query: 78 DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137 D G++I VP+ V R+ LA+ GLP S G+EL D FG T F + +T R LEG Sbjct: 89 DGGAAILVPADKVHDVRLKLASAGLPKGSI-VGFELMDNAK-FGQTQFQERLTFQRGLEG 146 Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHL 194 E+ R+I +++ + +ARVH+ +P+ F + +P+ASV++ ++P I HL Sbjct: 147 ELTRSIGALAAVQSARVHLALPNQNGFFREQQKPSASVLL-TLHPGRTLDRTQIAGIVHL 205 Query: 195 VAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQAIQHEIEMNINKALAA 251 V+++VP +D VTVLD+TG L+ + + L V I+ + L Sbjct: 206 VSSSVPEMDPKAVTVLDATGALISGAGDAGSAGGLDAQQLQYVGQIEGNYTKRVFDILEP 265 Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVE----------RSIRLSKDAQRSETSQ 301 LG DN R+ V AE++ + Y P+ + RS ++S +A ++Q Sbjct: 266 VLGRDNLRAQVTAEVDFSQTESTSEAYAPNQGLGADGKPAAATLRSHQVS-EASGGGSAQ 324 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLE------------NTDKKEEQSNYEINTKSIATTH 349 P N P V P+ S + ++E +NYE++ T + Sbjct: 325 PAGVPGAASNQPPVP-ATAPVNGSAQPLQTAQSGGGSGGNSRREATTNYEVDKTVRVTRN 383 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 ++RL+ AVV+N +T+ G+++ + ++ +V G N+ RGD++ + Sbjct: 384 ATGTIKRLNAAVVLNHRSVTDAKGKTSTTPISAEEMEKLTALVKETIGFNADRGDSVKLI 443 Query: 410 SMDF 413 + F Sbjct: 444 NAPF 447 >gi|220935138|ref|YP_002514037.1| flagellar FliF M-ring protein [Thioalkalivibrio sp. HL-EbGR7] gi|219996448|gb|ACL73050.1| flagellar FliF M-ring protein [Thioalkalivibrio sp. HL-EbGR7] Length = 552 Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 110/391 (28%), Positives = 190/391 (48%), Gaps = 28/391 (7%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++ P Y LY L + +++ AL NI +R+ +++VP+ + AR+ LA + Sbjct: 42 MWMTRPSYTVLYPNLAEQESGQVAEALGRHNIPYRLDSATGAVTVPARHLHDARLKLATE 101 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP ++ G+EL ++ G + ++ RA+EGE+AR+I ++S + +ARVH+ +P Sbjct: 102 GLP-RATGFGFELLEQDQGLGTSRLIENARYHRAIEGELARSIATLSSVESARVHLALPA 160 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + ++P+ASV++ R ++ S I HLVA++VP+L+ VTV+D G+ Sbjct: 161 QSVFVRDRSKPSASVLVNLYAGRTLDESRIA---GIVHLVASSVPDLEPERVTVVDQRGR 217 Query: 216 LLT--ANEMERNILG-KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272 LLT A +++ + + L + ++ I L LG D R+ V A+L+ + Sbjct: 218 LLTQPAGDVDGVMASTQQLDFTRRMEESYVRRIMDILTPILGADAVRAQVAADLDFSRIE 277 Query: 273 IREIVYDPDSKVERSIRLSKDAQRSE---------TSQ-PESAVTVEQNMPHVSDRKVPL 322 +DP+ V RS ++S+D R T+Q PE+ V E+ +VP Sbjct: 278 RTTEAFDPEFSVVRSEQISEDESRGGGMMGVPGALTNQPPEAGVIAEEGNGANGQAQVP- 336 Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382 + + NYE++ L RLSIAVVV+ G + Sbjct: 337 -----GSSSRRTVRNYEVDRTVSHIREAPGGLRRLSIAVVVDHKEERNEAGELERVPFTE 391 Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413 + I +V A G ++RRGD+I + + F Sbjct: 392 QEMERITTLVREAVGFDARRGDSINVINASF 422 >gi|325526932|gb|EGD04395.1| flagellar MS-ring protein [Burkholderia sp. TJI49] Length = 367 Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 96/317 (30%), Positives = 159/317 (50%), Gaps = 24/317 (7%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VPS+ V + R+ LAA G Sbjct: 49 WSRAPDYRVLYSNLSDRDGGAIITALQQANVPYKFADAGGAILVPSNQVHETRLKLAAMG 108 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RTI+SI+ + ARVH+ +P Sbjct: 109 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLAIPKP 166 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV + V +AI +V++ VP++ +VT++D G LLT Sbjct: 167 SVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMSAKNVTIVDQDGNLLTQ 226 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ ++ + I+ LA G N RS V A+++ + Y Sbjct: 227 PASASGLDASQLKYVQQVEQNTQKRIDAILAPIFGAGNARSQVSADIDFSRLEQTSENYG 286 Query: 280 PDSKVERS-IRLSKDAQRSETSQ--------------PESAVTVEQNMPHVSDRKVPLPR 324 P+ ++S IR + + +E +Q P+ A + P V+ P+ Sbjct: 287 PNGSPQQSAIRSQQTSTSTELAQSGASGVPGALSNTPPQPA-----SAPIVAGNGANAPQ 341 Query: 325 SLENTDKKEEQSNYEIN 341 + +D+K++ +NYE++ Sbjct: 342 TTPVSDRKDQTTNYELD 358 >gi|237799234|ref|ZP_04587695.1| flagellar MS-ring protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022089|gb|EGI02146.1| flagellar MS-ring protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 595 Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 150/605 (24%), Positives = 258/605 (42%), Gaps = 101/605 (16%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y LY L D +I L Sbjct: 24 LSFLENLSEMTMLRQVGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGLDSKQIMETL 83 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + ANI++ + N ++ V S V +ARI LA G+ + +N G+E+ DK G + FM+ Sbjct: 84 TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINP 182 R LEGE+ARTI +++ + AARVH+ +P F + +P+ASV++ R++ P Sbjct: 144 ATRYRRGLEGELARTISALNNVKAARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHE 240 S AI +LVA +VP L +TV+D G LL+ A E + GK + ++ Sbjct: 204 S---QVLAIINLVATSVPELSKSQITVVDQKGTLLSDQAENSELTMAGKQFDYSRRMEGM 260 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE-- 298 + + L LG D +++ V A ++ + ++PD RS + S + QRS Sbjct: 261 LTQRVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQ-SVNEQRSSSS 319 Query: 299 ---------TSQPESAVTVEQ----------------------NMPHVSDRKVPLPRSLE 327 ++QP T Q N + D P Sbjct: 320 GSGGVPGALSNQPPGPATAPQTAGAGGAGAAGPIAPGQPLLDANGQQIMDPATGQPALAP 379 Query: 328 NTDKKEEQS--NYEINTKSIATTHDNYKLERLSIAVVVN--------KGRLTEVLGRSAD 377 K QS N+E++ T +L RLS+AVVV+ G ++ +AD Sbjct: 380 FPADKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVSRAPWSAAD 439 Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF-------LENQLFNSGTVQVSFMD 430 LA ++V A G ++ RGD++++ ++ F L F S Q F D Sbjct: 440 -------LARFTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYS---QPWFWD 489 Query: 431 ILSRHFATVINALVFLVGTLLVTFLGLHALRR-LHNIDDAKKGEV----GGKSILSPPPI 485 ++ + VG + + L LR L+NI + K ++ GG + L Sbjct: 490 LVKQA-----------VGVIFILILVFGVLRPVLNNITNGKSKQLAAFGGGDAELG---- 534 Query: 486 SSAVTTGLMPNDNIALDSSNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAK 544 G + ND ++L + S + +++N+ S ++ + R A+ Sbjct: 535 GMGGLDGELSNDRVSLGGPQSILLPSPTEGYDAQLNAIKS---------LVAEDPGRVAQ 585 Query: 545 ILRKW 549 ++++W Sbjct: 586 VVKEW 590 >gi|126738564|ref|ZP_01754269.1| flagellar M-ring protein FliF [Roseobacter sp. SK209-2-6] gi|126720363|gb|EBA17069.1| flagellar M-ring protein FliF [Roseobacter sp. SK209-2-6] Length = 520 Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 134/416 (32%), Positives = 202/416 (48%), Gaps = 25/416 (6%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110 LY LE + +L + + + G SI VPS + R+ LA++GLP++ G Sbjct: 4 LYAGLESGSAGDVVRSLEQRGTPYEV--RGGSIYVPSDQRDELRLTLASEGLPANGGK-G 60 Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170 YEL D ++ FG TS M + RA EGE+ARTI I ARVHI F++ Sbjct: 61 YELLDSLSGFGTTSQMFDAAYWRAKEGELARTIVGSPHISQARVHIANTGSNPFQRT-VD 119 Query: 171 PTASVMIRAI-NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK 229 PTASV + + +P A AIR L+A+AV L + +V V+D+ G L+ + E Sbjct: 120 PTASVSVVPLGSPITPAQANAIRFLIASAVTGLAVDNVAVIDANGALIGSTEAAAAAGAG 179 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 S Q+I+ + + + A +G N V + DT+ IRE DP+S+V S Sbjct: 180 SDDRSQSIRD----RVMRLVEARVGHGNAVVEVSVDTVTDTESIREKRVDPESRVAISTD 235 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 + + A S E VTV N+P S NT E+ NYEI+ Sbjct: 236 VEERADSSSNQTGE--VTVASNLPD--GDAASGEGSKNNTSATRERVNYEISETEKEIIR 291 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 ++RL++AV++N T G + + + + LA + +++SAA G + RGD IT+ Sbjct: 292 GPGAIKRLTVAVLINGTTSTTATGETQFEPRPEEELAALRELISAAVGFDESRGDVITLK 351 Query: 410 SMDF--LENQLFNSGT-VQVSFMDILSRHFATVINALVFLVGTLLVTF-LGLHALR 461 SM+ +E Q GT SFMD L +F T+ ++ + LV+ LGL +R Sbjct: 352 SMELPSIEPQ----GTEATASFMDNL--YFDTM--GIIQVAALALVSLILGLFVVR 399 >gi|317153718|ref|YP_004121766.1| flagellar M-ring protein FliF [Desulfovibrio aespoeensis Aspo-2] gi|316943969|gb|ADU63020.1| flagellar M-ring protein FliF [Desulfovibrio aespoeensis Aspo-2] Length = 531 Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 121/441 (27%), Positives = 214/441 (48%), Gaps = 20/441 (4%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 F+ T+ R I LA +++ L + +++N P Y L L D +RI L Sbjct: 15 FWSDRTAAQRILIGGLAVSVVIAFALMI---YWMNKPDYKVLMTNLYPEDASRIVGMLQA 71 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 + + DNG +I VP+ V + R+ +A +G G+E+FD V G T F+Q I Sbjct: 72 EKEQYVLDDNGKTILVPADRVYELRLKVAGEG-NLHGQGIGFEIFDNVQ-IGQTDFVQHI 129 Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE 189 RAL+GE++RTI I ARVH+V+P F + P+AS++++ + + + E Sbjct: 130 NFQRALQGELSRTITEFPQIEQARVHLVIPKKSLFIEDQMPPSASIILQLKDNAKLAANE 189 Query: 190 --AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS---LSIVQAIQHEIEMN 244 + +LV+ AV L+ ++TV D G+ L E + L S L I++ + Sbjct: 190 VQGVVNLVSMAVEGLEPKNITVTDMKGRPLYTPEDDSGGLALSNTQLEYKADIENTTQRR 249 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 I + L +G + + V A+L+ + IR+ YDPD V RS + + ET+ Sbjct: 250 IMELLGPVVGPEKVIARVNADLDFSQKTIRKESYDPDGSVVRS-----ETRSEETTA--G 302 Query: 305 AVTVEQNMPHVSDRKVPL--PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 A ++ P + R R+ +++ ++ +N+EIN + +L+RLS+AV+ Sbjct: 303 AASLAGGEPDANFRGDGFTGTRTTQDSTRESRTTNFEINKQEENIIAPVGELKRLSVAVI 362 Query: 363 VNKGRLTEV-LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 V+ TE G+S + L I +++ A G +S RGD+I ++++ F E L++ Sbjct: 363 VDGTWQTEEDTGKSVYVPRSAEELERIKNLIAGAVGFDSVRGDSIEVSNISFGEPSLYDG 422 Query: 422 GTVQVSFMDILSRHFATVINA 442 ++ + ++ R +N Sbjct: 423 DSLMRTMLEYAQRLGKPFLNG 443 >gi|121997300|ref|YP_001002087.1| flagellar M-ring protein FliF [Halorhodospira halophila SL1] gi|121588705|gb|ABM61285.1| flagellar M-ring protein FliF [Halorhodospira halophila SL1] Length = 595 Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 113/409 (27%), Positives = 191/409 (46%), Gaps = 23/409 (5%) Query: 21 RILILASVILVPIMLFMAARFFVNSP-HYDNLYVKLEVSDVNRISVALSEANIDFRISDN 79 R L L + +L L +A F+ P LY L D + AL E + + Sbjct: 59 RKLGLGAGLLAVAGLGVAIFFWAQEPAELRTLYADLSSDDAAEVINALEEQGVRVEFDER 118 Query: 80 GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEI 139 I VP + V +ARI LA++GLP S GYE+ + FG++ FM+ RALE E+ Sbjct: 119 TGDIKVPENAVHRARIFLASEGLPRGS-GFGYEMLEDDPGFGVSEFMEHARFDRALETEL 177 Query: 140 ARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAA 197 AR+I+++ G+V+ARVH+ P F + ASV++ + E I HLVA+ Sbjct: 178 ARSIETLRGVVSARVHLDDPQESVFVRDRRDAKASVVLELDQDRQLPDRQVEGIIHLVAS 237 Query: 198 AVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255 AV +L+ G+V+V+D G+LLTA + E + + + ++ I+ + + +G Sbjct: 238 AVSDLEHGNVSVVDHRGRLLTAEDEPTEATRSAQQFELTRRLEERIQRRVEDMVEPIIGP 297 Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV 315 D R+ V A LN D ++ E ++DP+S RS Q SE S + +P Sbjct: 298 DRVRAQVSARLNFDERRQIEELFDPESSAIRS------EQMSERSGGGGQWPI--GIPGA 349 Query: 316 SDRKVPLPRSLENTD---------KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 + P P +L+ + +E N+E+ ++RL++ V+V+ Sbjct: 350 LTNQPPGPGTLDGEELEGGGGTPFSSDETRNWEVGRTLSEVQPAIGVIDRLTVGVLVDHR 409 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 + G + D + + +V A G ++ RGD +++ ++ F E Sbjct: 410 YVQNEDGEVVREALSDEEIQTLENLVQDAVGYDADRGDAVSVATVPFAE 458 >gi|323698502|ref|ZP_08110414.1| flagellar M-ring protein FliF [Desulfovibrio sp. ND132] gi|323458434|gb|EGB14299.1| flagellar M-ring protein FliF [Desulfovibrio desulfuricans ND132] Length = 530 Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 119/436 (27%), Positives = 220/436 (50%), Gaps = 31/436 (7%) Query: 21 RILI--LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 RILI L + +++ L + +++N P Y L L D +R+ L D+++ + Sbjct: 24 RILIGGLTAAVVISFALMI---YWMNKPDYRVLMTNLYPEDASRVVGMLQAQKEDYKLEN 80 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 NG++I VP+ V + R+ +A +G G+E+FD+V G T F+Q + RAL+GE Sbjct: 81 NGTTIMVPADRVYELRLKVAGEG-NLHGQGIGFEIFDEVQ-IGQTDFVQHVNYQRALQGE 138 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVA 196 +ARTI + ARVH+V+P F + P+AS++++ + E I +LV+ Sbjct: 139 LARTITEFPIVDKARVHLVIPQKSLFIEDQVAPSASIVLQLKGEGKLEPDEIKGIVNLVS 198 Query: 197 AAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQA-----IQHEIEMNINKALAA 251 AV L+ ++TV D G L E + G ++S Q ++ +++ I + L Sbjct: 199 MAVEGLEPKNITVTDMKGHPLYTPEDQST--GLAMSNAQLLHKADVEGKLQRRILELLGP 256 Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311 +G D + V A+L+ + +R+ VYDP+S V RS + + ET+ A + Sbjct: 257 AVGPDKVIARVNADLDFSQRTVRKEVYDPNSAVVRS-----ETRNEETTS--GAADLGGG 309 Query: 312 MPHVSDRKVPL--PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369 P V+ R ++ +++ ++ +N+EI+ + +L+RL++AV+V+ T Sbjct: 310 APDVNFRGDGFSGTKTTQDSTRESRTTNFEIDKQEENIITPVGELKRLTVAVIVDGTWQT 369 Query: 370 EVLGRSADQGKIDSYLAEINKI---VSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 + G+ Q + EIN+I + A G +++RGDTI ++++ F E QL + ++ Sbjct: 370 DADGK---QVYVPRSAEEINRIRTLIENAVGFDAQRGDTIEVSNISFGEPQLADGDSLMR 426 Query: 427 SFMDILSRHFATVINA 442 + ++ R +N Sbjct: 427 TMLEYAQRLGKPFLNG 442 >gi|323703169|ref|ZP_08114822.1| flagellar M-ring protein FliF [Desulfotomaculum nigrificans DSM 574] gi|323531828|gb|EGB21714.1| flagellar M-ring protein FliF [Desulfotomaculum nigrificans DSM 574] Length = 514 Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 119/429 (27%), Positives = 210/429 (48%), Gaps = 39/429 (9%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +LD+L Q ++ T+ + ++ILA +++ + ++ + P Y L LE D Sbjct: 6 LLDKLKQRWRE-TNQNKKALIILAGAVVLAGVFYLV--LTLTRPRYAVLLGDLEPRDAGN 62 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L I ++++D G +I VP V + RI LA++GL + G+ELFDK + FG Sbjct: 63 IVAQLESDKIPYQLTDQGKTIMVPEDQVDEVRIKLASKGL-LNGMGQGFELFDK-SKFGE 120 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T F Q+++ RAL+ E+ RTI S+ G+ ARVH+V+P F P+ASV+I+ + P Sbjct: 121 TDFEQQVSYQRALQEELRRTITSVEGVEQARVHLVIPTKSVFLDDQGTPSASVVIK-LKP 179 Query: 183 SVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLL---------TANEMERNILGKS 230 E ++ L+ +V L +V ++D+ G +L A + + Sbjct: 180 GASLKPEQVKGLNDLIIGSVEGLKPENVHIIDTEGHVLNDFLKDSSDVAGAFGGTAVERQ 239 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV-ERSIR 289 I +A + E+E + + L LG + + V A+L+ + QQ P V ERS + Sbjct: 240 QQIRRAYEKELENRVQQMLTKLLGPNKAVAMVTADLDFNQQQTNTTEVLPGPVVSERSTK 299 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 S + + +A Q++P +++ + + K ++ NY+ T+ + Sbjct: 300 ESGNDAGGGGTAGSTAQMPGQSVPGINNGQ-------SSYTKSDDIKNYQNGTRVQSVVQ 352 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 K+ RLS AVV+++ ++ D+ +I IV+AA G N +RGD IT++ Sbjct: 353 APGKVLRLSTAVVLDESV------KNLDK-------TQIQDIVTAAIGFNPQRGDQITVS 399 Query: 410 SMDFLENQL 418 +M F ++L Sbjct: 400 TMTFDHSEL 408 >gi|213028767|ref|ZP_03343214.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 377 Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 107/355 (30%), Positives = 174/355 (49%), Gaps = 37/355 (10%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 15 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 74 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 75 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 132 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + P+ASV + RA++ A+ HLV++AV L G+VT++D +G Sbjct: 133 PSLFVREQKSPSASVTVTLEPGRALD---EGQISAVVHLVSSAVAGLPPGNVTLVDQSGH 189 Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT +N R++ L ++ I+ I L+ +G N + V A+L+ ++ Sbjct: 190 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 249 Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309 E Y P+ ++ S+ SE ++QP E+ + Sbjct: 250 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 309 Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 QN P S NT ++ E SNYE++ T + +ERLS+AVVVN Sbjct: 310 QNTPQTSTSTNSNNAGPRNT-QRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVN 363 >gi|307721566|ref|YP_003892706.1| flagellar M-ring protein FliF [Sulfurimonas autotrophica DSM 16294] gi|306979659|gb|ADN09694.1| flagellar M-ring protein FliF [Sulfurimonas autotrophica DSM 16294] Length = 569 Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 135/450 (30%), Positives = 234/450 (52%), Gaps = 41/450 (9%) Query: 19 RTRILILASVI-----LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73 + +I+I A+V+ L+ +++F A + + Y+ L+ L +D ++ L + NI Sbjct: 20 QQKIIIAAAVVGIVAFLIFLVVFTAKK--TSGSAYEVLFDALTPADAAKVVEQLEKDNIT 77 Query: 74 FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 ++I N + I VP +V K RI +A+ G+P +S G+ELFDK FG TSF Q+I +R Sbjct: 78 YKIEAN-NVIKVPRDVVYKERISIASLGIPKNS-GVGFELFDK-QEFGATSFDQKIKHLR 134 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSA 188 ALEGE++RTI ++S + A V + +P F PTASVM+ R + P K Sbjct: 135 ALEGELSRTITALSPVEKATVSLALPKDTLFVSKQVDPTASVMVQLADGRMLTP---KQI 191 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ---AIQHEI--EM 243 I++LV+AAVP L +V ++DS G L N+ + LS+VQ I+ E + Sbjct: 192 RGIKNLVSAAVPKLKSSNVMLIDSDGVTLGDNDEMAQM--SELSVVQQKYKIKEEKKRQE 249 Query: 244 NINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 I +A F+ G D + V E + + YDP++ V RS ++++ ++ E S P Sbjct: 250 KIIDVIAPFVGGKDKVVAQVTIEFDFSQKNSTSEKYDPENVV-RSEQVNE--EKREGSSP 306 Query: 303 ESAVTVEQNMPHVSD-RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIA 360 + V + ++ + + +++E K +NYE+ K+++TT + +++R++ A Sbjct: 307 KEVGGVPGTVSNIGPVQGLASNKTVEKYSKNSGTTNYEVG-KTVSTTKSQFARIKRITAA 365 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYL----AEINKIVSAAT---GINSRRGDTITITSMDF 413 VVV+ G+ + + + + Y+ A+IN + S A+ GI+ RGD I++ ++ F Sbjct: 366 VVVD-GKYKTKVDKDGNPTEEMEYVPLDDADINALTSLASRSIGIDPNRGDQISVQNLQF 424 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINAL 443 E L N G V+ I S + + L Sbjct: 425 -ERALTNKGVQGVNQAIIFSETYLAPFSGL 453 >gi|188997543|ref|YP_001931794.1| flagellar M-ring protein FliF [Sulfurihydrogenibium sp. YO3AOP1] gi|188932610|gb|ACD67240.1| flagellar M-ring protein FliF [Sulfurihydrogenibium sp. YO3AOP1] Length = 536 Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 112/386 (29%), Positives = 204/386 (52%), Gaps = 34/386 (8%) Query: 48 YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 Y LY L D I ALS+ NI +++ NG+ I VP V AR+ LAA+GLPS Sbjct: 51 YAVLYSGLAPDDAGNILTALSQENIPYKLEGNGTIIMVPKDKVYDARLKLAAKGLPSGKV 110 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 G+E+F++ G T F + + +RA+EGE+ RTI+ + ++ A+V+I +P F + Sbjct: 111 -VGFEIFEE-PKLGTTQFQENVNYIRAVEGELTRTIKQLDAVMDAKVNIALPKDSIFVRQ 168 Query: 168 GARPTASVMIRAINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLLT--ANEM 222 ASV+I+ + P + E I+ LV+ AVPNL +VTV+D+ G++L+ +E Sbjct: 169 EDEAKASVIIK-LWPDKDLTKEQIKAIVFLVSRAVPNLKPENVTVVDNRGRVLSDLIDEE 227 Query: 223 ERNILG-KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI--REIVYD 279 N G K++ + + ++ ++E +I LA +G + R V A + ++T ++ ++ +YD Sbjct: 228 SANESGDKTVDLKRKLERQLEKDIQSMLAKVVGPE--RVVVKASVELETGKVHQKDEIYD 285 Query: 280 PDSKV---ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQS 336 PD ER I+ S+ + + P T N+P V + V + + +K + + Sbjct: 286 PDKVAVVSERKIKESETEESQTINAPPGTPT---NVPPVMNTPV-MGGGGKKKEKSDITT 341 Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSAD---------QGKIDSYLAE 387 NY+++ I T + ++++S+ V+++ G+ E+ + + Q ++ SY Sbjct: 342 NYDVSKSMIETQKPLFTIKKVSVGVMID-GKYKEIKDKDGNIIKQFEPRSQQELQSY--- 397 Query: 388 INKIVSAATGINSRRGDTITITSMDF 413 ++ +A G + RGD +T+ S+ F Sbjct: 398 -ENLIKSAIGFDPNRGDQVTVISVPF 422 >gi|159045804|ref|YP_001534598.1| flagellar MS-ring protein [Dinoroseobacter shibae DFL 12] gi|157913564|gb|ABV94997.1| flagellar MS-ring protein FliF [Dinoroseobacter shibae DFL 12] Length = 558 Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 133/461 (28%), Positives = 225/461 (48%), Gaps = 29/461 (6%) Query: 9 QFFKSGTSLG-RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 Q + T LG R +++ +A+V+ V L +R + +P Y LY LE + + L Sbjct: 5 QIRTTWTGLGLRNQLIAIAAVLGVFGALLALSRTAL-APDYALLYSGLEPAAAGEVIANL 63 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + I ++ G+ I V + + RI LAA+GLP++ +GYEL D ++ FG TS M Sbjct: 64 EQRGIAHQV--RGTGIYVDRAQQDRLRIALAAEGLPAAG-GAGYELLDSLSGFGTTSQMF 120 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR--PTASVMIRAINPSVY 185 + RA EGE+ARTI S + + +ARVH+ S R AR PTASV + S+ Sbjct: 121 DAAYWRAKEGELARTIASSASVRSARVHV---SAASSRPFEARKEPTASVFLTPARGSLS 177 Query: 186 KS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN 244 A+A+R+LV++A+ + +V+++D+ + E + + + + A++ + Sbjct: 178 GGQADALRYLVSSAIAGMRPENVSIIDAVSGTMLTGEGPASAIAEQTTKADALK----LR 233 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 I + L A +GV N V E D ++I E V+DP+ V S R + ++ + E Sbjct: 234 IERLLEARVGVGNAFVEVNIETERDRERIVERVFDPNGTVPVS-RETTESTLQSSRDSEG 292 Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 +V+V N+P D + +N + E+ NYE++ +RL++AV+VN Sbjct: 293 SVSVASNLPD-GDANAESAKDAQNETETRERINYEVSETQREIERGPGATKRLTVAVLVN 351 Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF----LENQLFN 420 G + + D +A++ ++V + G + RGD IT+ SM+ + + + Sbjct: 352 GIPSVSEDGTVSFTPRPDREMADLEELVKSTVGFDETRGDVITLRSMEMPGSAAPDPVES 411 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461 SG +D +S VI + TL FLGL LR Sbjct: 412 SGWFAPQPVDTMS-----VIQIAALALVTL---FLGLFVLR 444 >gi|54294647|ref|YP_127062.1| flagellar MS-ring protein [Legionella pneumophila str. Lens] gi|53754479|emb|CAH15963.1| Flagellar M-ring protein [Legionella pneumophila str. Lens] Length = 544 Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 118/425 (27%), Positives = 209/425 (49%), Gaps = 50/425 (11%) Query: 25 LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSIS 84 LA+ I + + + + +R P Y LY +L D + I L +IDF+I N + Sbjct: 29 LAASIAIGVAVVLWSR----DPSYVPLYSQLNAQDSSEILTVLERNSIDFKIDKNNGLLM 84 Query: 85 VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS-FGLTSFMQEITRVRALEGEIARTI 143 VP+ + AR+ LAAQGLP ++ G++L F + FM+ +ALE E+ARTI Sbjct: 85 VPADELQSARLKLAAQGLPRDTA-IGHDLLGSSGGVFNTSQFMENARYKQALEAELARTI 143 Query: 144 QSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRH-------LVA 196 + I +ARVH+ +P +F + P+ASV I VY E +H LVA Sbjct: 144 SKFNNIKSARVHLAIPRESAFVRDSQEPSASVFI-----DVYSGFEIKKHTIAAIVNLVA 198 Query: 197 AAVPNLDMGDVTVLDSTGKLLTA-------NEMERNILGKSLSIVQAIQHEIEMNINKAL 249 +++PNL G VTV+D G+LL +E ER L Q ++H+ I L Sbjct: 199 SSIPNLSTGRVTVVDQDGQLLNEGSGYNLFSETER-----FLDYRQNLEHQYAQKIQDIL 253 Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPD---SKVERSIRLSKDAQR---------S 297 LG R+ V A+++ + + + +++P+ + E++++ S++A S Sbjct: 254 TPILGYGRVRAKVSADIDFTSYEQTQELFNPELSALRSEQTMQESRNASNEASGVPGTLS 313 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPR-----SLENTD-KKEEQSNYEINTKSIATTHDN 351 T QP S++ ++N P + LP+ ++ D + + N+E++ T + Sbjct: 314 NTPQPNSSLG-QKNNPQQNATPNNLPQQTSSDQMQAKDVRMQTTKNFELDKTISHTKNQP 372 Query: 352 YKLERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 ++RLS+AV+V N+ + + + + + +I +VS A G+N +RGD++ + + Sbjct: 373 GTIKRLSVAVLVDNRPVMNDKTKKLEKKPLTKEEIEQIKLLVSDAIGLNVKRGDSLNVIN 432 Query: 411 MDFLE 415 F++ Sbjct: 433 SSFVK 437 >gi|290475703|ref|YP_003468592.1| flagellar basal-body MS(membrane and supramembrane)-ring and collar protein [Xenorhabdus bovienii SS-2004] gi|289175025|emb|CBJ81828.1| flagellar biosynthesis; basal-body MS(membrane and supramembrane)-ring and collar protein [Xenorhabdus bovienii SS-2004] Length = 569 Score = 143 bits (361), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 121/426 (28%), Positives = 202/426 (47%), Gaps = 60/426 (14%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92 I + +A ++ SP Y LY L D I L++ NI +R ++N S++ +P+ V + Sbjct: 38 IAIVVALFLWMRSPDYRVLYSNLSDKDGGEIVTQLTQMNIPYRFAENSSALMIPADKVHE 97 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 AR+ LA QGLP + GYEL DK FG++ F +++ RA EGE++RTI+S+ + +A Sbjct: 98 ARLKLAQQGLPKGGA-VGYELLDK-EKFGISQFSEQVNYNRAKEGELSRTIESLDPVESA 155 Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVL 210 RV + +P F + PTASV +R + + AI HLV++ V L +V ++ Sbjct: 156 RVILSIPKPSLFVREQKSPTASVTVRLLQGRTLDEGQVNAIAHLVSSGVAGLPPSNVKIV 215 Query: 211 DSTGKLLT---ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELN 267 D +G+LLT AN ++ N L +Q ++ + I L +G N + V A+L+ Sbjct: 216 DQSGRLLTQADANGLDLNT--TQLKYIQEVEKRFQHRIETILTPVVGRGNVHAQVTAQLD 273 Query: 268 MDTQQIREIVYDPDSKVERSIRLSKDAQRSE--------------TSQPESAVTVEQNMP 313 ++ Y P+ + LSK + SE ++QP +A + P Sbjct: 274 FSRREQTAEEYKPNQPPNEAAVLSKQSSSSEQSGGSLVGGVPGALSNQPSAAPSAPIEKP 333 Query: 314 HVSDRKVPLPRSLENTDKKEEQ------SNYE-INTKSIATTHD---NYK---------- 353 + P + D+K +Q +NYE + S HD NY+ Sbjct: 334 N--------PDTKGKGDEKSDQNRNSTYNNYERLVNNSRNNRHDELINYQVGKTISHTQL 385 Query: 354 ----LERLSIAVVVNKGRLTEVLGRSADQGK--IDSYLAEINKIVSAATGINSRRGDTIT 407 +ERLS+AVV+N G + + K L++I + A G +++RGD++ Sbjct: 386 QVGAVERLSVAVVIN---YATTQGENGPETKALTPEQLSQIEALTREAMGFSTKRGDSLN 442 Query: 408 ITSMDF 413 + + F Sbjct: 443 VVNTPF 448 >gi|119385376|ref|YP_916432.1| flagellar MS-ring protein [Paracoccus denitrificans PD1222] gi|119375143|gb|ABL70736.1| flagellar M-ring protein FliF [Paracoccus denitrificans PD1222] Length = 526 Score = 143 bits (360), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 118/399 (29%), Positives = 203/399 (50%), Gaps = 28/399 (7%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + + P LY L+ + A+ ++ + + I G SI V S + R+ LA + Sbjct: 39 WMASRPGMALLYSGLDPQQSGAVMAAVEKSGVPYEI--RGDSIWVAESRRDELRMTLAGE 96 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLPS+ SGYE+ D ++ FG TS M + RA EGE+ARTI ++ + AARVH+ +P Sbjct: 97 GLPSAG-GSGYEILDGMSGFGTTSQMFDAAYWRAKEGELARTILALPNVKAARVHLAVPQ 155 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 +R+ A TASV + + ++ A+A++ LV++ VP + V V+DS ++++ Sbjct: 156 GRGYRRE-AEATASVTLTTDGTPISRNQAKALKFLVSSGVPGMTADRVAVIDSERGVISS 214 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD----TQQIRE 275 E + G+ + E++ N+ + LAA +G N + EL++D ++ + E Sbjct: 215 GE---DFDGEDR------EAEMKRNVERILAAHVGHGN----AIVELHLDVVNESELLTE 261 Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ 335 +DP + S + A +S +Q + AVT N+P D RS + + ++ Sbjct: 262 QRFDPQERALISQESEESADQSSNAQ-QGAVTAASNLPEGQDSAGDQSRS--SRSETRQR 318 Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395 SN+E++ + T RL++AV+VN TE G + + ++ L I ++V++A Sbjct: 319 SNFEVSKITREVTRQPGATRRLTVAVLVNGVARTEANGEATLVPREETELQAIRELVASA 378 Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSR 434 G + RGD IT+ S+ F L +GT+ S LSR Sbjct: 379 VGFDEGRGDAITVKSLPFA--SLSQAGTL-ASAGGFLSR 414 >gi|239817137|ref|YP_002946047.1| flagellar MS-ring protein [Variovorax paradoxus S110] gi|239803714|gb|ACS20781.1| flagellar M-ring protein FliF [Variovorax paradoxus S110] Length = 560 Score = 143 bits (360), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 116/457 (25%), Positives = 200/457 (43%), Gaps = 42/457 (9%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y LY + D I +L + N+ ++ ++ G +I V V + R+ LA+Q Sbjct: 47 LWSRAPDYGVLYTNVTDRDGGAIIASLQQMNVPYKFAEGGGAILVARDRVPEVRLKLASQ 106 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP G+EL D FG ++F +++ R LEGE+AR+++SI + +AR+H+ +P Sbjct: 107 GLPKGG-GVGFELMDN-QKFGTSNFAEQVNYQRGLEGELARSVESIGSVESARIHLALPK 164 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + +P+ASV++ R+I+ AI H+V+++VP+LD VTV+D G Sbjct: 165 PSLFVRDQKKPSASVILTLHRGRSIDEG---QVSAIVHMVSSSVPDLDAKSVTVVDQRGN 221 Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LL+ AN R + L Q I+ I L +G N R+ V AE++ + Sbjct: 222 LLSAANAGARGLDVSQLKYAQEIEQGYIRRIEAILQPLVGASNVRAQVAAEIDFSVVERT 281 Query: 275 EIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRS--------- 325 E Y P+ + R + + + + T +P + P S Sbjct: 282 EESYKPN----QDPRAAAVRSQQSSESMQQGATPPGGVPGALSNQPPQTPSAPITAPPNA 337 Query: 326 ----------------LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369 + +K+ +NYE++ ++RLS+AVVVN Sbjct: 338 AAAAPKAAATATAASTAPGSSRKDTTTNYELDRSIRHVQQGAGGVKRLSVAVVVNHRDTA 397 Query: 370 EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL-ENQLFNSGTVQVSF 428 + G+ + + + +I +V A G + RGD++ + + F E +G + Sbjct: 398 DSAGKPGQRALTPAEIEQIRNLVKEAMGFSQERGDSLNVVNSAFAREGGDAEAGPALPFW 457 Query: 429 MDILSRHFATVINALVFLVG-TLLVTFLGLHALRRLH 464 D + A I + + G L F L L R H Sbjct: 458 RDPANLGLAMSIAQYLLMAGLALFAWFAVLRPLLRKH 494 >gi|54297673|ref|YP_124042.1| flagellar MS-ring protein [Legionella pneumophila str. Paris] gi|53751458|emb|CAH12876.1| Flagellar M-ring protein [Legionella pneumophila str. Paris] Length = 544 Score = 143 bits (360), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 118/425 (27%), Positives = 209/425 (49%), Gaps = 50/425 (11%) Query: 25 LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSIS 84 LA+ I + + + + +R P Y LY +L D + I L +IDF+I N + Sbjct: 29 LAASIAIGVAVVLWSR----DPSYVPLYSQLNAQDSSEIMTILERNSIDFKIDKNNGLLM 84 Query: 85 VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS-FGLTSFMQEITRVRALEGEIARTI 143 VP+ + AR+ LAAQGLP ++ G++L F + FM+ +ALE E+ARTI Sbjct: 85 VPADELQSARLKLAAQGLPRDTA-IGHDLLGSSGGVFNTSQFMENARYKQALEAELARTI 143 Query: 144 QSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRH-------LVA 196 + I +ARVH+ +P +F + P+ASV I VY E +H LVA Sbjct: 144 SKFNNIKSARVHLAIPRESAFVRDSQEPSASVFI-----DVYSGFEIKKHTIAAIVNLVA 198 Query: 197 AAVPNLDMGDVTVLDSTGKLLTA-------NEMERNILGKSLSIVQAIQHEIEMNINKAL 249 +++PNL G VTV+D G+LL +E ER L Q ++H+ I L Sbjct: 199 SSIPNLSAGRVTVVDQDGQLLNEGSGYNLFSETER-----FLDYRQNLEHQYAQKIQDIL 253 Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPD---SKVERSIRLSKDAQR---------S 297 LG R+ V A+++ + + + +++P+ + E++++ S++A S Sbjct: 254 TPILGYGRVRAKVSADIDFTSYEQTQELFNPELSALRSEQTMQESRNASNEASGVPGTLS 313 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPR-----SLENTD-KKEEQSNYEINTKSIATTHDN 351 T QP S++ ++N P + LP+ ++ D + + N+E++ T + Sbjct: 314 NTPQPNSSLG-QKNNPQQNATPNNLPQQTSSDQMQAKDVRMQTTKNFELDKTISHTKNQP 372 Query: 352 YKLERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 ++RLS+AV+V N+ + + + + + +I +VS A G+N +RGD++ + + Sbjct: 373 GTIKRLSVAVLVDNRPVMNDKTKKLEKKPLTKEEIEQIKLLVSDAIGLNVKRGDSLNVIN 432 Query: 411 MDFLE 415 F++ Sbjct: 433 SSFVK 437 >gi|114569237|ref|YP_755917.1| flagellar MS-ring protein [Maricaulis maris MCS10] gi|114339699|gb|ABI64979.1| flagellar M-ring protein FliF [Maricaulis maris MCS10] Length = 551 Score = 143 bits (360), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 151/563 (26%), Positives = 249/563 (44%), Gaps = 33/563 (5%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++ L + F++ + T I LA + +M F A + LY L+ S+ Sbjct: 1 MNALFEQFRAFGAGRLTAIFGLAVGVAAALMYFSGA---MGGASQSLLYSGLDPSEAVAT 57 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 S L +ANI + I + G++I V V +AR+ +A+ G P S ++ GYE+FD+ +SFG Sbjct: 58 SQLLDQANIPYEIREGGTAIYVNRDQVDEARVRVASNG-PLSGASVGYEIFDRQDSFGQN 116 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 SF+Q + RA EGE+ARTIQS++ + +ARVH+ +P+ F + PTA+V I Sbjct: 117 SFVQNLNAKRATEGELARTIQSLNYVNSARVHLNLPERRLFSRDQQSPTAAVTISTAGRL 176 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS--IVQAIQHEI 241 + IR++VA++ G V++ D G+ L + G+S I+ + EI Sbjct: 177 NSEQVRVIRNIVASSSGIAPTG-VSIADDRGRQLASGSD-----GQSAGSMIMDERRGEI 230 Query: 242 E----MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 E NI + +G R V AEL+ + YDP+ V RS +D Sbjct: 231 EAQLRQNILDIVEGVVGAGAARVQVNAELDRQSITQSSETYDPNGAVIRSRERGEDLSND 290 Query: 298 ETSQPESAVTVEQNMPHVSD-RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 + ++ V+ +N+P D S N + E+ NYEI++ + + + R Sbjct: 291 QDGANQNRVSASENLPDAGDGAGAEGSGSRSNRESTSERVNYEISSTTRTEIIEAGAINR 350 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG---DTITITSMDF 413 LS+AV V+ T G + + S + I +V +A G S G D +T++ ++F Sbjct: 351 LSVAVAVDGVLETAEDGTVTWRERPQSEIDRIEALVRSAMGFVSEPGVRQDLLTVSQIEF 410 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL-------GLHALRRLHNI 466 GT S M V V LL+ FL G + + Sbjct: 411 ARTDPL-LGTAAASGMSFSKSDIMRAAEIGVMFVTALLIIFLVARPLVKGASGMAMPQGL 469 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 A G G ++ P +A+ + PN +AL S+ +I+ V Sbjct: 470 ALAGAGMDG---AVAGAPAPTALPS--QPNRPVALPSAGGAGGREDSIDIEKIDGQVKAS 524 Query: 527 SDLRLLHMIEINEERFAKILRKW 549 S ++ +++E + E ILR W Sbjct: 525 SLKKVANIVESHPEESISILRTW 547 >gi|145297444|ref|YP_001140285.1| flagellar MS-ring protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142850216|gb|ABO88537.1| lateral flagellar M-ring protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 584 Score = 143 bits (360), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 113/419 (26%), Positives = 206/419 (49%), Gaps = 50/419 (11%) Query: 22 ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81 I +LA+++ I++ + + +S +Y LY K E+ D I L + + FR+ + Sbjct: 40 IALLAAIVAGTIVVIL----WTSSKNYVPLYGKQELYDTANIMEMLEKEQVPFRLEKSSG 95 Query: 82 SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 I VP S + R+ LAA+G+ ++ SG E D V G + FM+ ALEGE+AR Sbjct: 96 QILVPESQLAHVRMALAARGV-RAAMPSGLEGLDTVTGLGTSEFMEGARYRHALEGELAR 154 Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIG---ARPTASVMI-----RAINPSVYKSAEAIRH 193 TI S+ + +ARVH+ +P F +G +P+ASVM+ +A+ P EAI + Sbjct: 155 TIISLDAVRSARVHLAIPKRTLF--VGRDEEKPSASVMMDLQPGQAMEPG---QVEAIAN 209 Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK----SLSIVQAIQHEIEMNINKAL 249 LVA ++ + G VT++D G+LL+A ++ GK + V+ ++ I + L Sbjct: 210 LVAGSISGMKPGAVTIVDQAGQLLSAELGDKAGFGKQSVQQMEYVRKLEQYIRQRASDML 269 Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS--------- 300 LG NFR + A++N + + + DP V +K++ +S+ + Sbjct: 270 YPMLGTSNFRVQIAADVNFNAVEETQQQLDPQGVV------TKESTKSDKTIDALALGIP 323 Query: 301 ------QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 PE+ EQ + + ++ T+++E YE + + T + +L Sbjct: 324 GALSNRPPETTPKNEQPAQNQVEANTDTQKNDSRTERQEVSKQYENSRTIVHTRYQQGRL 383 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 E++++++++N+ + G SA+Q L +I ++V + G ++ RGD I++ DF Sbjct: 384 EKMNVSILLNQQSAPKD-GWSAEQ------LEQIRQMVERSVGFDNARGDQISLQVFDF 435 >gi|303248346|ref|ZP_07334607.1| flagellar M-ring protein FliF [Desulfovibrio fructosovorans JJ] gi|302490254|gb|EFL50168.1| flagellar M-ring protein FliF [Desulfovibrio fructosovorans JJ] Length = 546 Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 119/434 (27%), Positives = 208/434 (47%), Gaps = 40/434 (9%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++L+Q++ + T+ R ++L + + F+ +F+N P LY +L D R+ Sbjct: 9 FEKLIQYWSNRTAAQR---ILLGGLAASTVAAFLVMIYFLNQPEMRVLYTRLAPEDAARV 65 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L + + + DNG++I VP+ V + R+ +A +GL G+ELFD++ G T Sbjct: 66 VEQLKASKTPYELRDNGATIMVPAESVYEQRLKIAGEGL-MHGQGVGFELFDQLK-VGQT 123 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 F+Q I RAL+GE+ARTI + ARVH+V+P F + + +ASV++ Sbjct: 124 DFVQRINYTRALQGELARTITEFPQVEKARVHLVLPQKSLFIEEQKQASASVVLTLKRGQ 183 Query: 184 VY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ---AIQ 238 K + I +LV+ AV L +T+ D+TG+ L + + + G S S + + Sbjct: 184 KLDAKQLQGIVNLVSMAVEGLTPEHITITDTTGQSLYQPQGDSGLAGMSNSQFEFKNTYE 243 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ--IREIVYDPDSKVERSIRLSKDAQR 296 +E I + L +G RS V A +++D Q IR+ +YDP+ V RS + +++ Sbjct: 244 SNLENRIEQLLTPIVGPG--RSIVKANVDLDFSQRTIRKELYDPNVTVVRSEQKNEETTS 301 Query: 297 SETSQPESAVTVEQNMPHVSDRKVP----------LPRSLENTDKKEEQSNYEINTKSIA 346 + S TV P VP S + + ++ +N+EIN + Sbjct: 302 GTAAVDASGQTV---TPRGGGAAVPNNNFQGSGYSGTESTQKSSRQNSTTNFEINKEEQN 358 Query: 347 TTHDNYKLERLSIAVVVNKGRLTE-------VLGRSADQGKIDSYLAEINKIVSAATGIN 399 L+R SIAV+V+ + + + R A++ L I ++V+ A G++ Sbjct: 359 VVTPVGDLKRQSIAVIVDGTYVKDKDKETYTFVPRKAEE------LERIKQVVARAAGLD 412 Query: 400 SRRGDTITITSMDF 413 RGD I ++S +F Sbjct: 413 PSRGDEIQVSSFEF 426 >gi|120554914|ref|YP_959265.1| flagellar MS-ring protein [Marinobacter aquaeolei VT8] gi|120324763|gb|ABM19078.1| flagellar M-ring protein FliF [Marinobacter aquaeolei VT8] Length = 568 Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 114/422 (27%), Positives = 204/422 (48%), Gaps = 33/422 (7%) Query: 17 LGRTRILILASVILV-----PIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71 LG R+ +L V L+ + L +A + P+Y + L + ++ L Sbjct: 30 LGFNRLNLLRQVGLMVGLAASVALGVAVVLWAQEPNYQPVVGDLSAYNPQDVTTILDSNG 89 Query: 72 IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131 ID+++ ++ VPS V AR+ LAA+G+ + GYEL D+ G + FM+ I+ Sbjct: 90 IDYKMDPRTGALLVPSEQVYSARLKLAAEGV-TDQKTMGYELLDQERGLGTSQFMETISY 148 Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYK 186 R LEGE+ARTI ++ G+ ARVH+ +P+ F + PTASV + R P + Sbjct: 149 RRGLEGELARTIAAMRGVRNARVHLAIPERSVFIRDAREPTASVFLEVFAGRRPEPEQIR 208 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSLSIVQAIQHEIEMN 244 AI +LVA ++P ++ VTV+D G LLT +E+ E + + ++ + Sbjct: 209 ---AIVNLVAGSIPMMNRDQVTVVDQNGNLLTGDEVQAETDRMKDQYEYTSRVEERLTRR 265 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQR------- 296 + + +G +R+ V A+L+ + E +Y+P+ + RS R LS+ QR Sbjct: 266 VASLIGPIVGEGRYRAEVTADLDFSAVERAEELYNPEQQAVRSERELSE--QRVAGAQGG 323 Query: 297 ---SETSQPESAVTV-EQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 + +QP A TV EQ + P + + E NYE++ T + Sbjct: 324 IPGALANQPPGAATVPEQATAAPGEDGAPAAPPVNV--RSESTRNYELDRTVSYTRQELG 381 Query: 353 KLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 ++R+++A+ V+ ++ + G + Q ++ L ++ +V A G ++ RGD++T+ + Sbjct: 382 AVKRVTVALAVDDMKVVDPETGEVSYQPWPEAELQRLSMLVRDAVGYSASRGDSVTVMNT 441 Query: 412 DF 413 F Sbjct: 442 AF 443 >gi|271500086|ref|YP_003333111.1| flagellar M-ring protein FliF [Dickeya dadantii Ech586] gi|270343641|gb|ACZ76406.1| flagellar M-ring protein FliF [Dickeya dadantii Ech586] Length = 574 Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 127/474 (26%), Positives = 218/474 (45%), Gaps = 61/474 (12%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y LY L D I L + NI +R ++NG++I +P+ V + R+ LA Q Sbjct: 46 LWARGPDYRALYTNLNERDGGSIVSELGKMNIPYRFAENGAAILIPADKVYETRLKLAQQ 105 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F ++I RALEGE+ART++++ I +ARVH+ +P Sbjct: 106 GLPKGGA-VGFELLDQ-EKFGISQFSEQINYQRALEGELARTMETLGPIQSARVHLAIPK 163 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + P+A+V + RA++ S AI +LV+++V L VTV+D TGK Sbjct: 164 PSLFVREQKSPSAAVTVTLQPGRALDDS---QINAITYLVSSSVAGLPADKVTVVDQTGK 220 Query: 216 LLTANEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT N+ R++ L ++ + I L +G N + V A+++ ++ Sbjct: 221 LLTQNDGSGRDLNAAQLKYANEVESNYQRRIEAILTPVVGAGNVHAQVTAQIDFANREQT 280 Query: 275 EIVYDPDSKVE----RSIRLSKDAQRSE----------TSQPESAVTVEQNMP------- 313 + Y P+ RS + S+ QR ++ P A T + P Sbjct: 281 DEQYQPNQTPNQAAVRSQQTSQSDQRGGPNVGGVPGALSNTPTPAPTAPISTPPTNNANN 340 Query: 314 ---------------HVSDRKVPLPRSLENT--DKKEEQSNYEINTKSIATTHDNYKLER 356 ++ + S T ++++ NYE++ T ++R Sbjct: 341 ANNANNTNNANNANAAGNNTQTSASNSANQTFNSRRDQTINYEVDRTIRHTKQSTGSVQR 400 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 LS+AVVVN + + G+ A D L +I +V + G +S RGD++ + + F Sbjct: 401 LSVAVVVNYTQGED--GKPA--ALSDEQLKKIEALVRESMGFSSDRGDSVNVVNTPFT-- 454 Query: 417 QLFNSGTVQVSFMDILSRHFATVINA----LVFLVGTLLVTFLGLHALRRLHNI 466 + ++ ++ F + F +I A LV +VG ++ L L+R I Sbjct: 455 -VTDTSAGELPFWKKQA-FFDLLIEAGRWLLVLIVGWIMYRKLVRPQLQRRSQI 506 >gi|92114078|ref|YP_574006.1| flagellar M-ring protein FliF [Chromohalobacter salexigens DSM 3043] gi|91797168|gb|ABE59307.1| flagellar M-ring protein FliF [Chromohalobacter salexigens DSM 3043] Length = 594 Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 128/469 (27%), Positives = 201/469 (42%), Gaps = 54/469 (11%) Query: 35 LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKAR 94 L M AR +P Y LY L +D +I L + + S+NG ++ VP+ V K R Sbjct: 54 LLMWAR----APEYRVLYSTLTDADGGKIVSELDSMGVPYEFSENGQALLVPADQVNKLR 109 Query: 95 IHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARV 154 + LA QGLP +S GYEL D+ SFG++ F + + RALEGE+ARTI+ + + ARV Sbjct: 110 LQLAEQGLP-EASGVGYELMDE-QSFGISQFTEHVNYQRALEGELARTIEDLGPVSKARV 167 Query: 155 HIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDS 212 H+ M F + +ASVM+ V +AI H+V+++V L + DV V+D Sbjct: 168 HLAMAKPSVFVRESEPASASVMLDLQRGRVLGEGQVQAIMHMVSSSVSELAISDVAVVDQ 227 Query: 213 TGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ 271 TG+LL+ A++ + G L V ++ I LA LG N ++ V A+L+ + Sbjct: 228 TGRLLSPASDGNEALNGSQLDYVARVERNYAERIESILAPILGARNVKAEVSAQLDFSER 287 Query: 272 QIREIVYDPDSKV--------ERSIRLSKDAQ------RSETSQPESAVTVEQNMPHVSD 317 + Y P+ + S+ S D + ++QP N P D Sbjct: 288 EGTSETYGPNQPPNEAAVRSEQTSLSYSGDGDLAMGIPGALSNQPPGTAASPINAPQEDD 347 Query: 318 RKVPLPRSLENTDKKEEQS-------------------NYEINTKSIATTHDNYKLERLS 358 ++ ++E NYE++ H+ +ERL+ Sbjct: 348 AGDGEGEDAQDDGNQDEDGEATTQENATLGRTSRDNTINYEVDRTVEHIQHETGTIERLN 407 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 A+VVN + G D +A I + A G + RGD + + N Sbjct: 408 AAIVVNYRDGVDEDGNPTRVPLSDQEIANIRSLAQQAIGFSQARGDQLEVV------NSP 461 Query: 419 FNSGTVQ----VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 F+ + Q + L AT + +L+ L+ FL LR L Sbjct: 462 FDDTSEQRPEPAWWESPLLWSLATTLGQ--YLLIGLVALFLWFKVLRPL 508 >gi|52841987|ref|YP_095786.1| flagellar MS-ring protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|148359304|ref|YP_001250511.1| flagellar basal body M-ring protein FliF [Legionella pneumophila str. Corby] gi|52629098|gb|AAU27839.1| flagellar basal body M-ring protein FliF [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|148281077|gb|ABQ55165.1| flagellar basal body M-ring protein FliF [Legionella pneumophila str. Corby] gi|307610459|emb|CBX00030.1| flagellar M-ring protein [Legionella pneumophila 130b] Length = 544 Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 118/425 (27%), Positives = 209/425 (49%), Gaps = 50/425 (11%) Query: 25 LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSIS 84 LA+ I + + + + +R P Y LY +L D + I L +IDF+I N + Sbjct: 29 LAASIAIGVAVVLWSR----DPSYVPLYSQLNAQDSSEILTILERNSIDFKIDKNNGLLM 84 Query: 85 VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS-FGLTSFMQEITRVRALEGEIARTI 143 VP+ + AR+ LAAQGLP ++ G++L F + FM+ +ALE E+ARTI Sbjct: 85 VPADELQSARLKLAAQGLPRDTA-IGHDLLGSSGGVFNTSQFMENARYRQALEAELARTI 143 Query: 144 QSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRH-------LVA 196 + I +ARVH+ +P +F + P+ASV I VY E +H LVA Sbjct: 144 SKFNNIKSARVHLAIPRESAFVRDSQEPSASVFI-----DVYSGFEIKKHTIAAIVNLVA 198 Query: 197 AAVPNLDMGDVTVLDSTGKLLTA-------NEMERNILGKSLSIVQAIQHEIEMNINKAL 249 +++PNL G VTV+D G+LL +E ER L Q ++H+ I L Sbjct: 199 SSIPNLSAGRVTVVDQDGQLLNEGSGYNLFSETER-----FLDYRQNLEHQYAQKIQDIL 253 Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPD---SKVERSIRLSKDAQR---------S 297 LG R+ V A+++ + + + +++P+ + E++++ S++A S Sbjct: 254 TPILGYGRVRAKVSADIDFTSYEQTQELFNPELSALRSEQTMQESRNASNEASGVPGTLS 313 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPR-----SLENTD-KKEEQSNYEINTKSIATTHDN 351 T QP S++ ++N P + LP+ ++ D + + N+E++ T + Sbjct: 314 NTPQPNSSLG-QKNNPQQNATPNNLPQQTSSDQMQAKDVRMQTTKNFELDKTISHTKNQP 372 Query: 352 YKLERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 ++RLS+AV+V N+ + + + + + +I +VS A G+N +RGD++ + + Sbjct: 373 GTIKRLSVAVLVDNRPVMNDKTKKLEKKPLTKEEIEQIKLLVSDAIGLNVKRGDSLNVIN 432 Query: 411 MDFLE 415 F++ Sbjct: 433 SSFVK 437 >gi|294636866|ref|ZP_06715198.1| flagellar M-ring protein FliF [Edwardsiella tarda ATCC 23685] gi|291089927|gb|EFE22488.1| flagellar M-ring protein FliF [Edwardsiella tarda ATCC 23685] Length = 419 Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 110/380 (28%), Positives = 190/380 (50%), Gaps = 45/380 (11%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 L+LAS + + I++ +A + +P Y LY + D I LS+ NI +R ++NG++ Sbjct: 35 LLLASAVAIAIVVVLA--LWARAPDYRVLYSNISDRDGGAIVTQLSQMNIPYRFANNGTT 92 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 + VP+ V R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE+ART Sbjct: 93 LMVPADKVYDLRLKLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELART 150 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAA 197 I+++ +V+ARVH+ +P F + +P+ASV + RA++ AI ++V++ Sbjct: 151 IETLGPVVSARVHLALPKPSLFVREQKQPSASVTLTLEPGRALDDG---QINAIVYMVSS 207 Query: 198 AVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVD 256 +V L G+VTV+D G LLT + R++ L ++ ++ I L LG Sbjct: 208 SVAGLPPGNVTVVDQFGHLLTQPDGTGRDLNAAQLKFTSEVEGRLQRRIETILQPMLGSG 267 Query: 257 NFRSAVVAELNMDTQQIREIVYDPDS-KVERSIR-------------LSKDAQRSETSQP 302 N + V A+L+ ++ + Y P+ + +IR L+ + +++P Sbjct: 268 NVHAQVTAQLDFANREQTDEEYKPNQLPNQAAIRSQQISQSDQSGGQLNGGVPGALSNEP 327 Query: 303 ESAVTVEQNMPHVS------DRKVPLP---RSLENTD---------KKEEQSNYEINTKS 344 T + P S +R +P +L N +++E +NYE++ Sbjct: 328 APPATGNIDKPRNSTGTNGRNRNESMPSRSSTLSNNGRLASRNENIRRDETTNYEVDRTI 387 Query: 345 IATTHDNYKLERLSIAVVVN 364 T +ERLS+AVVVN Sbjct: 388 RHTQERAGGIERLSVAVVVN 407 >gi|296107351|ref|YP_003619051.1| flagellar M-ring protein FliF [Legionella pneumophila 2300/99 Alcoy] gi|295649252|gb|ADG25099.1| flagellar M-ring protein FliF [Legionella pneumophila 2300/99 Alcoy] Length = 544 Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 118/425 (27%), Positives = 209/425 (49%), Gaps = 50/425 (11%) Query: 25 LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSIS 84 LA+ I + + + + +R P Y LY +L D + I L +IDF+I N + Sbjct: 29 LAASIAIGVAVVLWSR----DPSYVPLYSQLNAQDSSEILTILERNSIDFKIDKNNGLLM 84 Query: 85 VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS-FGLTSFMQEITRVRALEGEIARTI 143 VP+ + AR+ LAAQGLP ++ G++L F + FM+ +ALE E+ARTI Sbjct: 85 VPADELQSARLKLAAQGLPRDTA-IGHDLLGSSGGVFNTSQFMENARYRQALEAELARTI 143 Query: 144 QSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRH-------LVA 196 + I +ARVH+ +P +F + P+ASV I VY E +H LVA Sbjct: 144 SKFNNIKSARVHLAIPRESAFVRDSQEPSASVFI-----DVYSGFEIKKHTIAAIVNLVA 198 Query: 197 AAVPNLDMGDVTVLDSTGKLLTA-------NEMERNILGKSLSIVQAIQHEIEMNINKAL 249 +++PNL G VTV+D G+LL +E ER L Q ++H+ I L Sbjct: 199 SSIPNLSAGRVTVVDQDGQLLNEGSGYNLFSETER-----FLDYRQNLEHQYAQKIQDIL 253 Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPD---SKVERSIRLSKDAQR---------S 297 LG R+ V A+++ + + + +++P+ + E++++ S++A S Sbjct: 254 TPILGYGRVRAKVSADIDFTSYEQTQELFNPELSALRSEQTMQESRNASNEASGVPGTLS 313 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPR-----SLENTD-KKEEQSNYEINTKSIATTHDN 351 T QP S++ ++N P + LP+ ++ D + + N+E++ T + Sbjct: 314 NTPQPNSSLG-QKNNPQQNATPNNLPQQTSSDQMQAKDVRMQTTKNFELDKTISHTKNQP 372 Query: 352 YKLERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 ++RLS+AV+V N+ + + + + + +I +VS A G+N +RGD++ + + Sbjct: 373 GTIKRLSVAVLVDNRPVMNDKTKKLEKKPLTKEEIEQIKLLVSDAIGLNVKRGDSLNVIN 432 Query: 411 MDFLE 415 F++ Sbjct: 433 SSFVK 437 >gi|260429390|ref|ZP_05783367.1| flagellar M-ring protein FliF [Citreicella sp. SE45] gi|260420013|gb|EEX13266.1| flagellar M-ring protein FliF [Citreicella sp. SE45] Length = 541 Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 137/470 (29%), Positives = 231/470 (49%), Gaps = 42/470 (8%) Query: 4 LDQLLQFFKSGTSLG-RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + QL Q ++ LG R RI++LA+ + V + + AR +P LY LE Sbjct: 1 MQQLAQIWEG---LGARRRIIVLAATVGVILAVLTMARM-AGTPSMALLYAGLENGAAGE 56 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + AL + + + + G +I VP R+ LA++GLP++S N GYEL D ++ FG Sbjct: 57 VVEALEQRGVVYEV--RGGAIFVPEMERDALRMTLASEGLPANS-NKGYELLDGLSGFGT 113 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 TS M + RA EGE+ARTI + + +ARVHI F++ +P+AS+ + + Sbjct: 114 TSQMFDAAYWRAKEGELARTIVASPYVASARVHIANSSANPFQR-DVQPSASISVTSTGE 172 Query: 183 SVYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEI 241 + + A A+++LVA+AVP L V V+D G L+ A + +G S + + Sbjct: 173 VLSPAQARALKYLVASAVPGLVPEQVAVIDGKGGLIGAEDE----VG-SGPTAEDKADLL 227 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDT----QQIREIVYDPDSKVERSIRLSKDA-QR 296 + + + A +G+ N V E+++DT + IR+ +DP+++V +S D ++ Sbjct: 228 RDRVQRLVDARVGLGN----AVVEVSVDTVTESETIRQRQFDPENRV----VISTDTEEQ 279 Query: 297 SETSQPESA--VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 S TSQ + VTV N+P S N + E+ NYE++ T + Sbjct: 280 SSTSQDTGSGNVTVASNLPDGQAGGGDSSSSQSN--ETRERVNYEVSETMREVTRVPGAI 337 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 +RL++AV+VN T G D+ L + +V++A G +RGD ITI S+ F Sbjct: 338 KRLTVAVLVNGTYDTAADGTQLFVPLPDNELTALRDLVASAVGFEEQRGDEITIRSLPFE 397 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFL---VGTLLVTFLGLHALR 461 + +G ++ + FA ++ ++ + V L+ LGL +R Sbjct: 398 RPEGLGTGPIEPDW-------FALQLDPMMLIQMAVLALVALILGLFVVR 440 >gi|86157820|ref|YP_464605.1| flagellar M-ring protein FliF [Anaeromyxobacter dehalogenans 2CP-C] gi|85774331|gb|ABC81168.1| flagellar M-ring protein FliF [Anaeromyxobacter dehalogenans 2CP-C] Length = 533 Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 115/414 (27%), Positives = 201/414 (48%), Gaps = 26/414 (6%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L +LL G L +L+ ++ + + A R ++ Y + L D Sbjct: 11 LPRLLGALPGGLKL----VLVAGALAAIGVAALTAVR---SAEAYQYAFTNLTPEDSAEA 63 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + AL A + +R+ GS+++VP+S V AR+ LA GLP G+E+FD+ G++ Sbjct: 64 AGALGAAGVPYRLEAGGSALAVPASRVYDARLLLAGAGLPRGG-GVGFEIFDR-GDLGVS 121 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 F Q++ RA EGE+ARTI ++ + +ARVH+ +P+ G +R RP A+ ++ + P Sbjct: 122 EFTQKVNLRRATEGELARTISRLAQVRSARVHLTLPEKGLYRDQD-RPAAAAVVVNLQPG 180 Query: 184 ---VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240 + IRHLV++AVP L V+V+D G++++ + LG+++ + ++ + Sbjct: 181 RTLGQREISGIRHLVSSAVPGLAPAGVSVVDGRGEVIS----DEGALGEAIGYQRRMERD 236 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 +E I L +G + V A L+ Q V DPDS RS R S+ + Sbjct: 237 LERRIVDLLGQAVGAGAVVARVTASLDQTEIQSSAQVLDPDSATLRSERKLTQQSSSDGA 296 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 P N P P R + +++ NY+++T + + +LERLS+A Sbjct: 297 GPAGVAGAAANQPLAPPAPAPGARGRSSASTEDQTRNYDVSTTTTTSVARVPRLERLSVA 356 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 V+V+ + Q + D+ +A + ++ A G ++ RGDT I+S F+ Sbjct: 357 VLVDG---------AGGQPRADAEIARLGELAKRAVGFDADRGDTFEISSSPFV 401 >gi|171057703|ref|YP_001790052.1| flagellar M-ring protein FliF [Leptothrix cholodnii SP-6] gi|170775148|gb|ACB33287.1| flagellar M-ring protein FliF [Leptothrix cholodnii SP-6] Length = 576 Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 120/430 (27%), Positives = 195/430 (45%), Gaps = 38/430 (8%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 +G LGR L LA +L I L A F+ + L+ L D I L++ N+ Sbjct: 28 AGLPLGRK--LALAGGVLALIGLLAMAVFWNTGNNDKVLFANLSDKDGGAIVAQLTQMNV 85 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 ++ ++ G++I VP+ V R+ LA GLP S+ G+EL D FG T F + + Sbjct: 86 PYKFTEGGTAILVPAEKVHDVRLKLAQAGLPKGST-VGFELMDNAR-FGTTQFQERLNFQ 143 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--A 190 R LEGE+ R+I ++S + AARVH+ +P+ F + +P+ASV++ A+ Sbjct: 144 RGLEGELVRSITALSAVEAARVHLALPNQNGFFRDQQKPSASVLLTLHPGRTLDRAQLAG 203 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLT--------ANEMERNILGKSLSIVQAIQHEIE 242 I HLV+A+V L+ V+VLD +G LL A + + L V I+ Sbjct: 204 IVHLVSASVAELNPKAVSVLDQSGSLLAGPPEGMAGAAGGTNGLDAQQLQYVNQIETVYT 263 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD-SKVERSIRLSKDAQRSETSQ 301 I L LG DN R+ V AE++ + + P+ ++R AQ +E S Sbjct: 264 KRILDILEPVLGRDNLRAQVSAEIDFSQTESTSEEFKPNQGDAPAAVR---SAQSTEQSN 320 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLE------------------NTDKKEEQSNYEINTK 343 P +A+ +P + P P + T ++E +NYE++ Sbjct: 321 PGAAMPA--GVPGAQSNQPPTPATAPINGQAQQMQAAQGGVGSNGTARREAVTNYEVDKT 378 Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403 T + +++RLS AVVVN +T+ G L ++ +V G + RG Sbjct: 379 VRVTRAASGQVKRLSAAVVVNSRSVTDKKGNVQVVPLTPEELDKLTALVQETVGFSKDRG 438 Query: 404 DTITITSMDF 413 D++ + + F Sbjct: 439 DSVKVINAPF 448 >gi|124516311|gb|EAY57819.1| Flagellar M-ring protein FliF [Leptospirillum rubarum] Length = 531 Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 130/454 (28%), Positives = 209/454 (46%), Gaps = 25/454 (5%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110 L+ L D I L+ + + +S GS I VPS V R+ LA +GLP +G Sbjct: 52 LFSNLSPGDSMAIQGRLNRLGVPYHLSKKGSVIRVPSGQVYALRMELADEGLPRHH-GAG 110 Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170 ++LF+ S T F+Q + + AL+ E+ RTI+ ++ I ARV IV+P F + + Sbjct: 111 FDLFNH-PSLATTDFVQRVQYLEALQTELDRTIEEMTPIALARVSIVLPRRTVFLREPDQ 169 Query: 171 PTASVMIRAINPSV---YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL 227 ASV++R + P + + I HLVA AVP L VTV+D+ G++L N R ++ Sbjct: 170 SHASVLVR-LKPGMTLEHPQVNGIVHLVANAVPGLSASRVTVVDTEGQIL--NRKRRGLV 226 Query: 228 GKSLSIVQ-AIQHEIEMNINKALAAF----LGVDNFRSAVVAELNMDTQQIREIVYDPDS 282 L+ Q + Q E+E ++ L + LG D V AELN + +DP+ Sbjct: 227 PGELTEAQLSYQREVEQSVQHQLQSMLDKVLGPDQSVVRVSAELNFRQVEKSSRTWDPNG 286 Query: 283 KVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT-----DKKEEQSN 337 +V + ++ P V NMP + + P +NT KK++ ++ Sbjct: 287 RVLKDREQIREKSTGSRILPIGVPGVLSNMPGANGKVASPPMGPKNTAETRYSKKKQIAH 346 Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLT---EVLGRSADQGKIDSYLAEINKIVSA 394 Y ++ T L R+S++V+VN +T + ++ Q + + + +IV Sbjct: 347 YHVSRTDQHVTEPVGNLRRISVSVLVNAVPVTIQSKTGPKTVMQPRDPKEIQDFTRIVQN 406 Query: 395 ATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTF 454 A G +S RGD + + S+ F + + SF + L+ F ++ +FL G LLV F Sbjct: 407 AIGFDSARGDQVVVLSVPFSGTAAPSPKNIDQSFQEKLA-PFVPLLE--IFLGGLLLVIF 463 Query: 455 LGLHALRRLHNIDDAKKGEVGGKSILSPPPISSA 488 L LR L K EV PP+ A Sbjct: 464 -SLLVLRPLLKAMVQWKPEVSPMQPAEGPPLGKA 496 >gi|307131589|ref|YP_003883605.1| flagellar M-ring protein fliF [Dickeya dadantii 3937] gi|306529118|gb|ADM99048.1| Flagellar M-ring protein fliF [Dickeya dadantii 3937] Length = 573 Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 115/434 (26%), Positives = 210/434 (48%), Gaps = 54/434 (12%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 L++AS + I++ ++ + P Y LY L D I L + NI +R +++G++ Sbjct: 30 LLIASAATIAIVVALS--LWARGPDYRVLYTNLNERDGGSIVSELGKMNIPYRFTESGAA 87 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I +PS V + R+ LA QGLP + G+EL D+ FG++ F ++I RALEGE+ART Sbjct: 88 IMIPSDKVYETRLKLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQINYQRALEGELART 145 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAA 197 ++++ I ARVH+ +P F + P+A+V + RA++ S AI +LV++ Sbjct: 146 METLGPIQNARVHLAIPKPSLFVREQKSPSAAVTVTLQPGRALDDS---QISAITYLVSS 202 Query: 198 AVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVD 256 +V L VTV+D TGKLLT N+ R++ L ++ + I L +G Sbjct: 203 SVAGLPADKVTVVDQTGKLLTQNDSSGRDLNAAQLKYANEVESNYQRRIEAILTPVVGAG 262 Query: 257 NFRSAVVAELNMDTQQIREIVYDPD-SKVERSIRLSKDAQRSE-------------TSQP 302 N + V A+++ +++ + Y P+ + + ++R +++Q + ++ P Sbjct: 263 NVHAQVTAQIDFASREQTDEQYQPNQTPNQAAVRSQQNSQSDQRGGPNVGGVPGALSNTP 322 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSL----------------------ENTDKKEEQS-NYE 339 A T + P ++ + + + + +Q+ NYE Sbjct: 323 TPAPTAPISTPPANNANNANNANNANNANANTAGTNTQTSAGNAANQTYNSRHDQTINYE 382 Query: 340 INTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN 399 ++ T + ++RLS+AVVVN + + G+ A D L +I +V + G + Sbjct: 383 VDRTIRHTKQNTGNVQRLSVAVVVNYTQGED--GKPAALN--DDQLKKIEALVRESMGFS 438 Query: 400 SRRGDTITITSMDF 413 + RGDT+ + + F Sbjct: 439 NDRGDTLNVVNTPF 452 >gi|90021833|ref|YP_527660.1| flagellar MS-ring protein [Saccharophagus degradans 2-40] gi|89951433|gb|ABD81448.1| flagellar M-ring protein FliF [Saccharophagus degradans 2-40] Length = 556 Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 112/399 (28%), Positives = 189/399 (47%), Gaps = 23/399 (5%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92 + + A + Y LY L+ D + + L I ++I + ++ V V + Sbjct: 36 VAIGFAVVLWSQGEDYKPLYGSLDRLDSSEVGAILDFNEIPYKIDGSTGALLVAVDEVHR 95 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 AR+ LA G+ +S +GYEL D+ G + FM+ R +EGE+ARTI SI+ + A Sbjct: 96 ARLVLAENGIQGDNS-TGYELLDQEQPLGTSQFMEATRYKRGIEGELARTIASINSVRGA 154 Query: 153 RVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDV 207 RVH+ +P F G +P+ASV + R I P K + I +LVA+++P L + +V Sbjct: 155 RVHLAIPKRSVFVGDGRKPSASVFLDLYPGRPIKP---KQIQGIANLVASSIPELQVENV 211 Query: 208 TVLDSTGKLLT---ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVA 264 TV+D G LLT A + + I G+ L Q ++ + M + + L+ LG NF++ V A Sbjct: 212 TVVDQKGNLLTTGIAEDKDLLIAGQHLEYTQKVEDGMIMRVRRLLSPILGDQNFKTEVAA 271 Query: 265 ELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVP--- 321 +++ + E V++PD RS + ++ QR + P N P +D + P Sbjct: 272 DIDFTEIEQAEEVFNPDLPAVRSEQTVEE-QRIGSGAPGGIPGALTNQPP-ADGQAPEQA 329 Query: 322 -----LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV-NKGRLTEVLGRS 375 + + + NYE++ T + +L RL++AVV+ +K + G Sbjct: 330 GQGGEGAGGQPSNTRSQAVRNYELDRTVSYTKREKGRLRRLTVAVVIDDKKTINPETGAV 389 Query: 376 ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 L +V A G ++ RGD++ I + FL Sbjct: 390 ERTQWTQQELERFAILVRDAVGYSAVRGDSVNILNEAFL 428 >gi|206603154|gb|EDZ39634.1| Flagellar M-ring protein FliF [Leptospirillum sp. Group II '5-way CG'] Length = 531 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 130/454 (28%), Positives = 209/454 (46%), Gaps = 25/454 (5%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110 L+ L D I L+ + + +S GS I VPS V R+ LA +GLP +G Sbjct: 52 LFSNLSPGDSMAIQGRLNRLGVPYHLSKKGSVIRVPSGQVYALRMELADEGLPRHH-GAG 110 Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170 ++LF+ S T F+Q + + AL+ E+ RTI+ ++ I ARV IV+P F + + Sbjct: 111 FDLFNH-PSLATTDFVQRVQYLEALQTELDRTIEEMTPIALARVSIVLPRRTVFLREPDQ 169 Query: 171 PTASVMIRAINPSV---YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL 227 ASV++R + P + + I HLVA AVP L VTV+D+ G++L N R ++ Sbjct: 170 SHASVLVR-LKPGMTLEHPQVNGIVHLVANAVPGLSASRVTVVDTEGQIL--NRKRRGLV 226 Query: 228 GKSLSIVQ-AIQHEIEMNINKALAAF----LGVDNFRSAVVAELNMDTQQIREIVYDPDS 282 L+ Q + Q E+E ++ L + LG D V AELN + +DP+ Sbjct: 227 PGELTEAQLSYQREVEQSVQHQLQSMLDKVLGPDQSVVRVSAELNFRQVEKSSRTWDPNG 286 Query: 283 KVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT-----DKKEEQSN 337 +V + ++ P V NMP + + P +NT KK++ ++ Sbjct: 287 RVLKDREQIREKSTGSRILPIGVPGVLSNMPGANGKVASPPMGPKNTAETRYSKKKQIAH 346 Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLT---EVLGRSADQGKIDSYLAEINKIVSA 394 Y ++ T L R+S++V+VN +T + ++ Q + + + +IV Sbjct: 347 YHVSHTDQHVTEPVGNLRRISVSVLVNAVPVTIQSKTGPKTVMQPRDPKEIRDFTRIVQN 406 Query: 395 ATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTF 454 A G +S RGD + + S+ F + + SF + L+ F ++ +FL G LLV F Sbjct: 407 AIGFDSARGDQVVVLSVPFSGTSAPSPKNIDQSFQEKLA-PFVPLLE--IFLGGLLLVIF 463 Query: 455 LGLHALRRLHNIDDAKKGEVGGKSILSPPPISSA 488 L LR L K EV PP+ A Sbjct: 464 -SLLVLRPLLKAMVQWKPEVSPMQPAEGPPLGKA 496 >gi|210134543|ref|YP_002300982.1| flagellar MS-ring protein [Helicobacter pylori P12] gi|210132511|gb|ACJ07502.1| flagellar basal-body M-ring protein [Helicobacter pylori P12] Length = 567 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 123/410 (30%), Positives = 207/410 (50%), Gaps = 30/410 (7%) Query: 23 LILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVSDVNRISVALSEANIDFRISD 78 LI A V++ +++F+ F + Y L+ L+ SD I L + I +++S Sbjct: 25 LIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFEGLDSSDNALILQHLQQNQIPYKVSR 84 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 + +I +P V + RI LA+QG+P +S G+E+FD FG T F Q I +RA+EGE Sbjct: 85 D-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFD-TKDFGATDFDQNIKLIRAIEGE 141 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195 ++RTI+S++ I+ A VHI +P F P+ASVM++ +NP + S I++L+ Sbjct: 142 LSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLK-LNPDMKLSPTQILGIKNLI 200 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAF 252 AAAVP L + +V +++ G+ + ++ N + + L Q ++ +E I LA Sbjct: 201 AAAVPKLTIDNVKIVNENGESIGEGDILENSKELALEQLHYKQNFENILENKIVNILAPI 260 Query: 253 LGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311 +G N A V AE + ++ + +DP++ V L + + + Q V N Sbjct: 261 VGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSN 320 Query: 312 MPHV---SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGR 367 + V D K P E +K + +NYE+ K+I+ + L RL+ AVVV+ G+ Sbjct: 321 IGPVQGLKDNKEP-----EKYEKSQNTTNYEVG-KTISEIKGEFGTLVRLNAAVVVD-GK 373 Query: 368 LTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 L A+ + D L +IN +V A G N RGD + +++ +F Sbjct: 374 YKIALKDGANALEYEPLSDESLKKINALVKQAIGYNQNRGDDVAVSNFEF 423 >gi|331005205|ref|ZP_08328599.1| Flagellar M-ring protein fliF [gamma proteobacterium IMCC1989] gi|330420987|gb|EGG95259.1| Flagellar M-ring protein fliF [gamma proteobacterium IMCC1989] Length = 565 Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 116/410 (28%), Positives = 200/410 (48%), Gaps = 26/410 (6%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92 + + A + Y LY L D + I L + I F++ ++ V + + Sbjct: 46 VAIGFAVVLWTQEEDYRPLYSNLNQLDSSEIISILEQNAIQFKVDTKTGALLVSAQDIHT 105 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 AR+ LA GLP++ S G+EL DK G + FM+ R LEGE+ARTI S++ + AA Sbjct: 106 ARLKLAEVGLPNTGS-VGFELLDKEQPLGSSQFMEATRYRRGLEGELARTITSLNAVRAA 164 Query: 153 RVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDV 207 RVH+ +P F + P ASV + RAI P + A+ +LVA+++ L + +V Sbjct: 165 RVHLAIPKRSVFVRDAREPRASVFVELYPGRAITP---QQVVAMSNLVASSISELSLKNV 221 Query: 208 TVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE 265 T++D G LL+ E + ++ + L + ++ +I I L +G D FR+ V A+ Sbjct: 222 TIVDQKGNLLSKGEEDPQLVQAAQELEYTREVEKKIISRIQALLDPIVGGDRFRAEVAAQ 281 Query: 266 LNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE--SAVTVEQNMPHVSDRKVPLP 323 ++ + + E +++PD RS + + D QR A+T N P + + Sbjct: 282 VDFNQVEQAEEMFNPDLPAIRSEQ-TVDEQRVGGGVGGIPGALT---NQPPANADAPEIA 337 Query: 324 RSLENTDKKEEQS-------NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL-GRS 375 +N + ++ + N+E++ T H K+ RLS+AVVV+ +T+ L G Sbjct: 338 AGGDNNNAQQSSNSRSQSTRNFELDRTMSYTKHQVGKVRRLSVAVVVDDRLVTDPLTGEQ 397 Query: 376 ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425 + D+ + ++ +V A G + RGD++ I + FL N FN+ +Q Sbjct: 398 KYETWSDNEIERLSILVRDAVGFSPARGDSVNIINTPFL-NDGFNAEEIQ 446 >gi|255021373|ref|ZP_05293421.1| Flagellar M-ring protein fliF [Acidithiobacillus caldus ATCC 51756] gi|254969236|gb|EET26750.1| Flagellar M-ring protein fliF [Acidithiobacillus caldus ATCC 51756] Length = 568 Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 132/439 (30%), Positives = 205/439 (46%), Gaps = 48/439 (10%) Query: 18 GRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSDVNRISVALSEANIDFRI 76 G R ILA +L I + + P Y LY L D + L + N+ FRI Sbjct: 29 GNRRFAILA--VLAAIFAGIVVTLLWSRPQGYGVLYTNLSNRDGGEVIAQLQKLNVPFRI 86 Query: 77 SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136 +D G+ ISVP++ V R+ LAA GLP G+E+ D G + F++ + RALE Sbjct: 87 TDGGAVISVPANEVYATRMKLAAVGLPRGE-GVGFEILDH-EPMGTSDFVEHVNYQRALE 144 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE------- 189 G + RTI S+S + A+VH+ +P F +PTASV++ S+Y E Sbjct: 145 GSLERTIASLSAVERAKVHLAIPKPSVFLSQEEKPTASVLV-----SLYPGRELSAAQVA 199 Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQAIQHEIEMNIN 246 I HLVAA+VP L +VTV+D G LL+A N LG L+ +A+ E I Sbjct: 200 GIVHLVAASVPGLTDKNVTVVDQQGNLLSAQG--GNDLGLQPGQLAYQRAVDRAYEHRIE 257 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV--ERSIRLSKDAQRSE------ 298 + LA +G R AV A+++ + + Y + ++++R S Sbjct: 258 QILAPIVGAGGVRVAVSADIDFSHSESSSVTYGNHQILSQQQNVRSSTGGGGPYGVPGAL 317 Query: 299 TSQPESAVTVEQNMPHVSDRK-------VPLPRSLENTDKKEEQS-NYEINTKSIATTHD 350 ++QP P VS P ++L T+ + + N++++ + T + Sbjct: 318 SNQPPGVAIAPLTAPTVSTLSPGDLIALAPTLKALAPTESSSDSTTNFDVDQTIVHTVNP 377 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGK--IDSYLAEINKIVSAATGINSRRGDTITI 408 ++RLS+AV+VN RL A Q K + L +I ++V A G +++RGDT+ + Sbjct: 378 VGSVKRLSVAVLVND-RLEGTGLGGAKQAKPLTAAQLQQIQQLVEDAIGYDAKRGDTVKV 436 Query: 409 TSMDFLENQLFNSGTVQVS 427 +M F SGT VS Sbjct: 437 VNMPF-------SGTEAVS 448 >gi|254517007|ref|ZP_05129065.1| flagellar M-ring protein FliF [gamma proteobacterium NOR5-3] gi|219674512|gb|EED30880.1| flagellar M-ring protein FliF [gamma proteobacterium NOR5-3] Length = 566 Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 121/437 (27%), Positives = 205/437 (46%), Gaps = 36/437 (8%) Query: 20 TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN 79 TR L L + I + M +V P+Y LY + D N + +L +D+R+ Sbjct: 22 TRQLALLIGLAASIAMAMGMVQWVVEPNYKPLYGTMAPEDTNDVIASLEANGVDYRMDRR 81 Query: 80 GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEI 139 ++VP+ V +AR+ LA G P G+E + GL+SFM++ RALE E+ Sbjct: 82 SGMVAVPAGDVHRARLLLAGDGYPRGE-GVGFESLYREQEIGLSSFMEQARFHRALESEL 140 Query: 140 ARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHL 194 ARTI ++ + ARVH+ M +F + +P ASVM+ R +N + I HL Sbjct: 141 ARTIGALESVRGARVHLAMAKQSAFLRQREQPAASVMLNLYAGRTLN---ERQLSGIVHL 197 Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEMNINKALAAF 252 VA++VPNLD V+V+D GKLL+ + E + ++ E+ I L Sbjct: 198 VASSVPNLDSEQVSVVDQQGKLLSGQGTDEEFGFTQDQFRYSRQLESELSGRIVDILEPI 257 Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKV-------ERSIRL-SKDAQRSETSQP-- 302 LG + R+ V A+L+ + Y P+++V E S RL + + +++P Sbjct: 258 LGANAVRAQVAADLDFTRVERTLETYAPETRVRSEQTSEETSNRLYAGGVPGTLSNEPPI 317 Query: 303 ESAVTVEQNMPHVSDR--------KVPLPRSLENTDKKEEQSNYEINTKSIATTHDN-YK 353 ++ V Q P+V +P R+ + NYE++ K+I+ + Sbjct: 318 DTTVATVQAAPNVDANIDANAQAGAIPPART-----SRRSTINYEMD-KTISHVRETPGA 371 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 L++LSIAVV++ T G ++ + E+ +V A G ++ RGDT+++ S F Sbjct: 372 LQKLSIAVVLDYIETTADDGTTSRVPMPQERIDEVTSLVREAVGFDADRGDTVSVISASF 431 Query: 414 LENQLFNSGTVQVSFMD 430 +E ++ S ++ Sbjct: 432 VEVPAIEDSVIESSLLE 448 >gi|332526951|ref|ZP_08403040.1| flagellar M-ring protein FliF [Rubrivivax benzoatilyticus JA2] gi|332111390|gb|EGJ11373.1| flagellar M-ring protein FliF [Rubrivivax benzoatilyticus JA2] Length = 554 Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 108/387 (27%), Positives = 182/387 (47%), Gaps = 28/387 (7%) Query: 48 YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 Y L+ + D I L++ N+ +R S+ G +I VP+S V R+ L+A GLP S Sbjct: 57 YRVLFANVGEKDGGAIVEKLAQMNVPYRFSEGGGTIMVPASQVYDLRLKLSAAGLPKGSI 116 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 +GYEL DK +FG T + I RALEGE+ RTIQ++S + ARVH+ +P+ F + Sbjct: 117 -TGYELLDK-TAFGQTQGQERINLQRALEGELTRTIQTLSSVETARVHLALPNQNGFFRE 174 Query: 168 GARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MER 224 +P+ASV++ A+ I HLV+++VP L V+VLD G LL++ + + Sbjct: 175 QQKPSASVVLTLRPGHTLDRAQLAGIVHLVSSSVPELSAKAVSVLDGDGSLLSSQDNASQ 234 Query: 225 NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM-DTQQIREIVYDPDSK 283 + + L V+ ++ +N L LG DN R+ V AE++ T+Q E Sbjct: 235 GLDTQQLQYVREVEATYLRRVNDLLEPVLGRDNLRATVTAEVDFSQTEQTSEEFKPNQGD 294 Query: 284 VERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE---------------- 327 ++R S+ SE+++P V +P + P+P S Sbjct: 295 NPAAVRASR---VSESTRP--GANVPSGVPGAVSNQPPVPASAPINGPAQALQAANGGAA 349 Query: 328 -NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLA 386 +++ ++ YE++ + R++ AVVVN + G+ L Sbjct: 350 GGNAQRDAETRYEVDKTVRVIRGATGTVRRINAAVVVNHRNGVDAKGKPTSTPLSQEELD 409 Query: 387 EINKIVSAATGINSRRGDTITITSMDF 413 ++ +V G + RGD++ + + F Sbjct: 410 KLTALVEQGIGFSKERGDSVRVVNAPF 436 >gi|225849149|ref|YP_002729313.1| flagellar M-ring protein FliF [Sulfurihydrogenibium azorense Az-Fu1] gi|225643430|gb|ACN98480.1| flagellar M-ring protein FliF [Sulfurihydrogenibium azorense Az-Fu1] Length = 534 Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 115/412 (27%), Positives = 215/412 (52%), Gaps = 31/412 (7%) Query: 25 LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSIS 84 L + LV I+ + + F + Y LY L D + ALS+ NI +++ NG+ I Sbjct: 29 LIGLFLVVILSIVLLKSF-HKEDYAVLYSGLSPDDAGNVLTALSQENIPYKLEGNGTIIM 87 Query: 85 VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144 VP V AR+ LAA+GLPS G+E+F++ G T F + + +RA+EGE+ RTI+ Sbjct: 88 VPKDKVYDARLKLAAKGLPSGKV-VGFEIFEE-PKLGTTQFQENVNYIRAVEGELTRTIK 145 Query: 145 SISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS---VYKSAEAIRHLVAAAVPN 201 + ++ A+V+I MP F + ASV+I+ + P + +AI LV+ AVP Sbjct: 146 QLDAVMDAKVNISMPKDSLFVREDEEAKASVIIK-LWPDKDLTKEQIKAIVFLVSHAVPK 204 Query: 202 LDMGDVTVLDSTGKLLTANEMERNIL----GKSLSIVQAIQHEIEMNINKALAAFLGVDN 257 L +VTV+D+ G++L+ + ++ N+ K++ + + ++ ++E +I LA +G + Sbjct: 205 LKPENVTVVDNRGRVLS-DLIDENVSEASGDKTVELKRKLEKQLEKDIQSMLAKVVGPE- 262 Query: 258 FRSAVVAELNMDTQQI--REIVYDPDSKV---ERSIRLSKDAQRSETSQPESAVTVEQNM 312 R V A + ++T ++ ++ +YDPD ER I+ S+ + + + P T N+ Sbjct: 263 -RVVVKASVELETGKVNQKDEIYDPDKVAVVSERKIKESETEEANTINAPPGTPT---NV 318 Query: 313 PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372 P V + + + +K + +NY+++ I T + ++++S+ V+++ G+ EV Sbjct: 319 PPVMNTPI-FGGGGKKKEKSDITTNYDVSKSMIETQKPLFVIKKVSVGVMID-GKYKEVK 376 Query: 373 GRSAD-----QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF--LENQ 417 + + + + L ++ +A G + RGD +T+ S+ F LE Q Sbjct: 377 DKDGNVKLEFEPRSPQELQSYENLIKSAIGFDPNRGDQVTVISVPFESLETQ 428 >gi|320107022|ref|YP_004182612.1| flagellar M-ring protein FliF [Terriglobus saanensis SP1PR4] gi|319925543|gb|ADV82618.1| flagellar M-ring protein FliF [Terriglobus saanensis SP1PR4] Length = 559 Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 115/437 (26%), Positives = 201/437 (45%), Gaps = 36/437 (8%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++ + L+ LE D+ ++ L A I ++ + +GS I V + + KAR+ +AA+ Sbjct: 57 WWTGRTDWRPLFKGLEGRDLQQVEQQLGSAGIAYQPTPDGSGIEVAAEQMDKARMVVAAK 116 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 G+P S G+ELFDK N G + F +++ RALEGE+ TI+++ + +ARVH+ + Sbjct: 117 GMPGSG-RMGFELFDKPNWVG-SEFDEKVNYQRALEGELEHTIETLGAVRSARVHLTLSR 174 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F TASV+++ N S+ + A +IR LVA AV NL V ++D+ G Sbjct: 175 QSLFAAEEHPATASVVLKMRNASLARDQAASIRALVAGAVENLHPEQVALVDADGHFDLN 234 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 +R VQ + +E + L G N R+ V + + ++ + VYD Sbjct: 235 GPTQRG-------EVQEQEQALERKLVAMLEPLAGTGNVRATVNLSFDSEAEERTDEVYD 287 Query: 280 PDSKVERSIRLSKDAQRSETSQPESAVT-VEQNMPHVSDRKVPLPRSLENTDK------- 331 P S++ S+ Q S + + AV NMP + PL + E D Sbjct: 288 PQQSAPVSMQRSE--QSSTQANRQGAVAGAAANMPGPAPAVPPLLATPEKKDANGLPVYP 345 Query: 332 ---------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSAD---QG 379 +EE S+Y + + T +++R+ AVVVN +TE G+ + Sbjct: 346 QAGGPSQAVREESSSYAVTRHLVHTQRGPGRVQRIVAAVVVNDRAVTEKAGKDGATLWKQ 405 Query: 380 KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATV 439 + + + ++ AA G + +R D + I ++ F E N+ + ++ + + H + Sbjct: 406 RTPEEMRRLEQLAQAAVGFDPKRADQVVIENIAFSE----NAADARPNWFERQAEHGSNF 461 Query: 440 INALVFLVGTLLVTFLG 456 + L+ TL V G Sbjct: 462 LRMQPVLIRTLGVVVCG 478 >gi|170722857|ref|YP_001750545.1| flagellar MS-ring protein [Pseudomonas putida W619] gi|169760860|gb|ACA74176.1| flagellar M-ring protein FliF [Pseudomonas putida W619] Length = 592 Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 138/563 (24%), Positives = 248/563 (44%), Gaps = 71/563 (12%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92 + + A + P Y LY L D ++ L+ A+I + + N ++ V + + + Sbjct: 50 VAIGFAVVLWSQQPDYRPLYGSLAGMDTKQVMDTLAAADIPYNVEPNSGALLVKADDLSR 109 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 AR+ LAA G+ S N G+EL DK G + FM+ R+LEGE+ART+ S++ + AA Sbjct: 110 ARLKLAAAGVAPSDGNVGFELLDKEQGLGTSQFMEATRYRRSLEGELARTVSSLNNVKAA 169 Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVL 210 RVH+ +P F + +P+ASV++ ++ + AI +LVA +VP LD VTV+ Sbjct: 170 RVHLAIPKSSVFVRDERKPSASVLVELYPGRSLEAGQVMAIVNLVATSVPELDKSQVTVV 229 Query: 211 DSTGKLLTANEMERNIL---GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELN 267 D G LL+ ++++ L GK + ++ + ++ L LG D +++ V A+L+ Sbjct: 230 DQKGNLLS-DQLQDTALTMAGKQFDYSRRMEGMLTQRVHNILQPVLGNDRYKAEVSADLD 288 Query: 268 MDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP-------------- 313 + ++PD RS + S + QR+ +S P+ N P Sbjct: 289 FSAVESTSEQFNPDQPALRSEQ-SVNEQRASSSGPQGVPGALSNQPPAGAAAPENATAAA 347 Query: 314 ------------------HVSDRKVPLPRSLENTDKKEEQS--NYEINTKSIATTHDNYK 353 + D P K Q+ N+E++ T + Sbjct: 348 PAAGAIQPGQPLVDANGQQIMDPATGQPMLAPYPADKRLQTTKNFELDRSISHTRQQQGR 407 Query: 354 LERLSIAVVVNKGRLTEVLGRS--ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 L RLS+AVVV+ + G + A G D LA ++V A G ++ RGD++T+ ++ Sbjct: 408 LTRLSVAVVVDDQVKVDAAGETTRAPWGAED--LARFTRLVQDAVGFDASRGDSVTVINV 465 Query: 412 DFLENQLFNSGTV----QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 F ++ + Q F DI+ + V+ LV + G L + + Sbjct: 466 PFAADRGEEIADIAFYQQPWFWDIV-KQVLGVVFILVLVFGVLRPVLNNITGGGKQAAAT 524 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF-SHSRNLQSRINSYVSKQ 526 D+ E+GG L G + ND ++L + S S ++++N+ Sbjct: 525 DSDM-ELGGMIGLD----------GELANDRVSLGGPTSILLPSPSEGYEAQLNA----- 568 Query: 527 SDLRLLHMIEINEERFAKILRKW 549 + ++ + R A+++++W Sbjct: 569 ----IKGLVAEDPGRVAQVVKEW 587 >gi|330961220|gb|EGH61480.1| flagellar MS-ring protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 596 Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 151/610 (24%), Positives = 258/610 (42%), Gaps = 110/610 (18%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y LY L D +I L Sbjct: 24 LSFLENLSEMTMLRQVGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGLDSKQIMDTL 83 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + ANI + + N ++ V S V +ARI LA G+ + +N G+E+ DK G + FM+ Sbjct: 84 TAANIVYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINP 182 R LEGE+ARTI +++ + ARVH+ +P F + +P+ASV++ R++ P Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHE 240 S AI +LVA +VP L +TV+D G LL+ A E + GK + ++ Sbjct: 204 S---QVLAIINLVATSVPELSKSQITVVDQKGTLLSDQAENSELTMAGKQFDYSRRMEGM 260 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE-- 298 + + L LG D +++ V A ++ + ++PD RS + S + QRS Sbjct: 261 LTQRVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQ-SVNEQRSSSS 319 Query: 299 ---------TSQPESAVTVEQ----------------------NMPHVSDRKVPLPRSLE 327 ++QP T Q N + D P Sbjct: 320 SSGGVPGALSNQPPGPATAPQTAGGGAAGAAGPIAAGQPLLDANGQQIMDPATGQPALAP 379 Query: 328 NTDKKEEQS--NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID--- 382 K QS N+E++ T +L RLS+AVVV+ +++ +A G+I Sbjct: 380 FPADKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVD-----DMVKTNAANGEISRAP 434 Query: 383 ---SYLAEINKIVSAATGINSRRGDTITITSMDF-------LENQLFNSGTVQVSFMDIL 432 + LA ++V A G ++ RGD++++ ++ F L F S Q F DI+ Sbjct: 435 WSATDLARFTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYS---QPWFWDIV 491 Query: 433 SRHFATVINALVFLVGTLLVTFLGLHALRR-LHNIDDAKK-----------GEVGGKSIL 480 + VG + + L LR L+NI + K E+GG L Sbjct: 492 KQA-----------VGVIFILILVFGVLRPVLNNITNGKSKQQLAAFGGGDAELGGMGGL 540 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 G + ND ++L + S + +++N+ S ++ + Sbjct: 541 D----------GELSNDRVSLGGPQSILLPSPTEGYDAQLNAIKS---------LVAEDP 581 Query: 540 ERFAKILRKW 549 R A+++++W Sbjct: 582 GRVAQVVKEW 591 >gi|94968680|ref|YP_590728.1| flagellar M-ring protein FliF [Candidatus Koribacter versatilis Ellin345] gi|94550730|gb|ABF40654.1| flagellar M-ring protein FliF [Candidatus Koribacter versatilis Ellin345] Length = 529 Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 118/422 (27%), Positives = 206/422 (48%), Gaps = 33/422 (7%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 Q+ F +S T T+ L LA L L + P LY L+ D + Sbjct: 13 QIANFLRSLTG---TQKLWLAFAGLTVTTLLYVFVTMLAKPEMKPLYSGLQAQDAQALGS 69 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L+ I+++IS +G+S+SV + AR+ +A+ G P S G+ELFDK N +G + F Sbjct: 70 KLAAQKIEYQISPDGTSVSVAVDKLDSARLLVASDGGPKSG-RMGFELFDKPN-WGSSDF 127 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINP 182 +++ RALEGE+ RT+ +I G+ A RVH+V+P F ASV+++ A++P Sbjct: 128 SEKVNYQRALEGELERTLSTIDGVEAVRVHLVLPRESLFADKREEAKASVILKLRGAMSP 187 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI-LGKSLSIVQAIQHEI 241 + S AIR +A AV L VTV+D+ E N+ +GK+ S ++ E Sbjct: 188 N---SDVAIRRFLAGAVEGLRPEGVTVIDA----------ENNLPIGKTSSDGSGVESER 234 Query: 242 EMNINK----ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + + K L +GV R++V E ++ + + YDP+S +++ S++ Sbjct: 235 DQALAKELVRTLEPIVGVGGARASVHVEYDVTSGDETQETYDPNSTAALTMQKSEETVGG 294 Query: 298 ETSQ--PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 +Q P +A N+P+ S ++ K E Y +N T +++ Sbjct: 295 TLAQGVPGTA----SNIPNTQSPSKST-NSADSQSSKSESGTYAVNRVVRHTLLPAGRIK 349 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 R++ A++V+ +T+ +G ++ + L +I+ + A+ GIN RGD + + ++ F E Sbjct: 350 RITAALLVDDADVTDAMGNTSRAKRSPEELKKIDSLARASLGINDARGDVLAVENLSFHE 409 Query: 416 NQ 417 N+ Sbjct: 410 NK 411 >gi|317180754|dbj|BAJ58540.1| flagellar MS-ring protein [Helicobacter pylori F32] Length = 567 Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 123/410 (30%), Positives = 206/410 (50%), Gaps = 30/410 (7%) Query: 23 LILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVSDVNRISVALSEANIDFRISD 78 LI A V++ +++F+ F + Y L+ +L+ SD I L + I ++I Sbjct: 25 LIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFERLDSSDNALILQHLQQNQIPYKILK 84 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 + +I +P V + RI LA+QG+P +S G+E+FD FG T F Q I +RA+EGE Sbjct: 85 D-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFD-TKDFGATDFDQNIKLIRAIEGE 141 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195 ++RTI+S++ I+ A VHI +P F P+ASVM++ I P + S I++L+ Sbjct: 142 LSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLK-IKPDMKLSPTQILGIKNLI 200 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAF 252 AAAVP L + +V +++ G+ + ++ N + + L Q ++ +E I LA Sbjct: 201 AAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLHYKQNFENILENKIVNILAPI 260 Query: 253 LGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311 +G N A V AE + ++ + +DP++ V L + + + Q V N Sbjct: 261 VGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSN 320 Query: 312 MPHV---SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGR 367 + V D K P E +K + +NYE+ K+I+ + L RL+ AVVV+ G+ Sbjct: 321 IGPVQGLKDNKEP-----EKYEKSQNTTNYEVG-KTISEIKGEFGTLVRLNAAVVVD-GK 373 Query: 368 LTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 L A+ + D L +IN +V A G N RGD + +++ +F Sbjct: 374 YKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDDVAVSNFEF 423 >gi|167644977|ref|YP_001682640.1| flagellar MS-ring protein [Caulobacter sp. K31] gi|167347407|gb|ABZ70142.1| flagellar M-ring protein FliF [Caulobacter sp. K31] Length = 547 Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 114/361 (31%), Positives = 184/361 (50%), Gaps = 27/361 (7%) Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 AL A I + +GS+I V V AR + +GL +S S GYE+FD ++ G T F Sbjct: 60 ALDTAGIKYETKSDGSTIYVARDKVNAARQLIFTKGLVTSGS-VGYEIFDTGSALGQTDF 118 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV---MIRAINP 182 +Q++ R RAL+GE+ RTIQ G+ AARVH+VMP F + +PTA+V M R +P Sbjct: 119 VQQLNRQRALQGELERTIQGWDGVRAARVHLVMPKRQLFEEDAEQPTAAVTVSMAREPSP 178 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK-SLSIVQAIQHEI 241 + + A+++LVA +V + V V+D GK L+A E ++ GK + A + I Sbjct: 179 DMVR---AVQNLVAGSVAGMKPDRVNVIDQHGKTLSAGNDE-SLAGKMAQDAKSATEARI 234 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + + LG R V A+L+++ +E +DPD +V RS + A SET Sbjct: 235 AKTVKDMIDGVLGPGKARVNVTADLDLNRVTTQERKFDPDGQVIRS-ESTNAANNSETKN 293 Query: 302 PES-AVTVEQNMPHVSDRKV-PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 ++ VT QN+P + PL +D E +NYEI+ + T + + ++++ Sbjct: 294 DDTGGVTSTQNIPGQTPNGFQPL---GSKSDSNESVTNYEISESTKTTVQEPGAVRKVAV 350 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSY-------LAEINKIVSAATGINSRRGDTITITSMD 412 AV ++ V GK +Y +A+I ++V A G + RGD +++ ++ Sbjct: 351 AVAIDG-----VAAPPGKDGKPGAYTPRSAEEIAQIEQLVKTAVGFDQTRGDQVSVVNVR 405 Query: 413 F 413 F Sbjct: 406 F 406 >gi|289208337|ref|YP_003460403.1| flagellar M-ring protein FliF [Thioalkalivibrio sp. K90mix] gi|288943968|gb|ADC71667.1| flagellar M-ring protein FliF [Thioalkalivibrio sp. K90mix] Length = 552 Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 120/418 (28%), Positives = 199/418 (47%), Gaps = 42/418 (10%) Query: 21 RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80 R L L ++ I++ +A ++ P Y L+ ++E + + ALS+A I +++ Sbjct: 26 RQLALLGMLAGAIVVIVAVLYWAFRPTYVPLFPRMESEEAAEVVQALSQAGISYQVDATT 85 Query: 81 SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV-RALEGEI 139 + VP V +AR+ LA++GLP S + G+EL + G TS M E R RA+EGE+ Sbjct: 86 GQVKVPQGDVAEARLQLASEGLP-RSGDVGFELLQEDTGLG-TSRMVEGARFHRAMEGEL 143 Query: 140 ARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHL 194 ART+ S+ + ARVHI + F + +ASV++ R+++ S AI HL Sbjct: 144 ARTVASLDAVERARVHIAQAEQSVFVRDRRPASASVVVHLRGSRSLSDS---QVAAIVHL 200 Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS--LSIVQAIQHEIEMNINKALAAF 252 VA++ L+ VTV+D G+LLT + +R + S LS + ++ I+ LA Sbjct: 201 VASSTSELEAERVTVVDQRGRLLTQDGADRGGMASSDRLSFSREVEQRYAERIHDLLAPI 260 Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE-----------TSQ 301 +G D R V A+++ + E +YDP++ RS + +D + T+Q Sbjct: 261 VGSDKVRVQVNADIDFSQVERTEELYDPETIALRSEQTREDERTGMDGGPAGVPGALTNQ 320 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 P VE ++ +P RS T NYE++ + + R+S AV Sbjct: 321 PPEGGAVEDPEGEMAPAPLPTSRSANVT------RNYEVDRRINHIREAPGGIRRVSTAV 374 Query: 362 VVN------KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 VV+ + TE + R A++ L I +V A G + RGDT+ + + F Sbjct: 375 VVDFREQVGEDGATESVARDAEE------LERIEALVREAVGFSEARGDTLNVVTAPF 426 >gi|221640811|ref|YP_002527073.1| flagellar MS-ring protein [Rhodobacter sphaeroides KD131] gi|221161592|gb|ACM02572.1| Flagellar M-ring protein FliF [Rhodobacter sphaeroides KD131] Length = 542 Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 125/450 (27%), Positives = 219/450 (48%), Gaps = 27/450 (6%) Query: 18 GRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS 77 GR R +++ + + + + + P LY L+ + AL + + Sbjct: 27 GRRRAVVVGATVAM-FLAVLGLSQLAGRPPMALLYAGLQGPAAGEVVTALEAQGAAYEV- 84 Query: 78 DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137 G S+ V ++ + R+ LA +GLP++ + +GYEL D ++ FG TS M + +RA EG Sbjct: 85 -RGDSVYVEAARRDEIRMKLAGEGLPATGA-AGYELLDGLSGFGTTSQMFDAAYLRAKEG 142 Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVA 196 E+ARTI + + AARVHI P FR+ RPTASV + +V A A +HLVA Sbjct: 143 ELARTILASPQVKAARVHIAQPAAQPFRRE-QRPTASVTVTTSGGAVTADQARAFKHLVA 201 Query: 197 AAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVD 256 +AV L DV+V+DS L+ + + E++ + + ++ E+ N+ + L A +G Sbjct: 202 SAVAGLQPEDVSVIDSVMGLIRSGD-EKD---SATAAGESRAAELRSNVERLLEARVGPG 257 Query: 257 NFRSAVVAELNMDTQQIREIV----YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNM 312 V E+++D + RE + +DP +V I + S +++P VTV N+ Sbjct: 258 R----AVVEVSVDVETARESIVEKSFDPKGRV--PISSETQEKSSNSTEPSPDVTVASNL 311 Query: 313 PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372 P + +S T + E N+E++ + RL++AV+V+ + Sbjct: 312 PEGDAKGGTGGKS--TTSETRETVNFEVSQTQRELMRQPGAIRRLTVAVLVDGIKTVADD 369 Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDIL 432 G + + + LA + ++V +A G++ RGD +T+ S+ F +GT ++ L Sbjct: 370 GTVGWEPRPEEELAVLRELVGSAVGLDESRGDRLTLRSLAF--ETPPEAGT--LAETGFL 425 Query: 433 SRHFATVINALVFL-VGTLLVTFLGLHALR 461 SR A + +L+ + V L+ LGL +R Sbjct: 426 SRLGAFDLMSLIQIGVLALVALILGLFVVR 455 >gi|302037604|ref|YP_003797926.1| flagellar M-ring protein FliF [Candidatus Nitrospira defluvii] gi|300605668|emb|CBK42001.1| Flagellar M-ring protein FliF [Candidatus Nitrospira defluvii] Length = 518 Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 109/392 (27%), Positives = 184/392 (46%), Gaps = 14/392 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92 I +A + P L+ L V D + I L +A + + ++ G+++ VPS+ V Sbjct: 24 IAGLVAVTLWTQQPDMQVLFANLAVDDASGIIDKLKDAKVPYETANGGTTVLVPSAQVHD 83 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 R+ LA QGLP GYE+FD+ + G++ F+Q++ RAL+GE+ARTI + + A Sbjct: 84 LRLELAGQGLPHGG-GVGYEIFDR-TTMGMSDFVQKLNYRRALQGELARTITQMPEVERA 141 Query: 153 RVHIVMPDMGSFRKIGARPTASVMI--RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 RVH+ +P+ F R ASV++ RA + + HLV+++V L DVTV+ Sbjct: 142 RVHLAIPERRLFATEQDRARASVVVSLRASQTLSKAQIQGVVHLVSSSVEGLQSRDVTVV 201 Query: 211 DSTGKLL--TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM 268 D G LL T+++ + G + + ++ +IE I L +GV+ V + L+ Sbjct: 202 DGHGNLLSNTSSDESAGLSGTQMEYQRTLEKDIETRIQTMLERIVGVNKAVVRVSSVLDF 261 Query: 269 DTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 + E YDP+ +V RS + ++ VE N+P ++ + S N Sbjct: 262 RKIETTEERYDPNGQVVRSEQRGQEKSSGVNGTSGGVPGVESNVPGGTEAEGGQTSS-NN 320 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY---- 384 K E NYEI+ +++LS+AV+V+ A + Y Sbjct: 321 NQTKNETVNYEISRTVSRIVEPTGTIKKLSVAVLVDGTYEGGGKAGEAGADQPKKYVPRS 380 Query: 385 ---LAEINKIVSAATGINSRRGDTITITSMDF 413 + I +IV A G ++ R D + + S+ F Sbjct: 381 EEEMKRIEEIVKKAMGYSTERQDQVEVVSIQF 412 >gi|117928049|ref|YP_872600.1| flagellar M-ring protein FliF [Acidothermus cellulolyticus 11B] gi|117648512|gb|ABK52614.1| flagellar M-ring protein FliF [Acidothermus cellulolyticus 11B] Length = 533 Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 129/432 (29%), Positives = 206/432 (47%), Gaps = 46/432 (10%) Query: 2 AILDQLLQFFKSGTSLGR--TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 AILD++ F T+ + T +++LA VI +LF R + P Y L+ L SD Sbjct: 5 AILDRIRAVFGEFTAGQKMVTALIVLALVIGA--VLF---RSWAAKPSYAPLFSNLAASD 59 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I+ L+ +R++D GS+I VP V + R+ +A LP+SS SG+ L DK Sbjct: 60 AAAITDKLNSLKEPYRLADGGSTILVPQKDVYQLRLDMAKANLPASS-QSGFSLLDK-GG 117 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 + F Q + +ALE E+A+TI++I+G+ +A V+IV+P F + ++PTASV++ Sbjct: 118 ITTSEFQQNVAYQQALESELAKTIEAINGVQSAIVNIVLPQTDVFTQDSSKPTASVLV-T 176 Query: 180 INPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ- 235 PS + E AI HLVA++V L+ DVTV DS G +L+A M+ + S Q Sbjct: 177 TQPSSTLTPEQVQAIVHLVASSVEGLNPADVTVADSQGHVLSAPGMDGQLSAASTLQDQQ 236 Query: 236 --AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293 A + + + L +G + V A LN DT+ Y S I LS+ Sbjct: 237 TAAYEQRVAQAVQNLLQPLVGPGHVVVQVNAALNFDTKSTTSETYLQPSPGTTPIPLSQS 296 Query: 294 AQ---RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 S T+Q + + N+ VP P T QS +I + Sbjct: 297 WSYETYSGTNQAATGILGPDNI------AVPTPSPSPGT----YQSQSATVDNAIGRVVE 346 Query: 351 NYK-----LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 K +ERLS+AV+++ V L ++ +V++A G+ + RGD+ Sbjct: 347 EVKTAPGSVERLSVAVLLDSAAAKNV------------NLTDVKNLVTSAAGVQTSRGDS 394 Query: 406 ITITSMDFLENQ 417 +++ +M F +Q Sbjct: 395 VSVATMPFDTSQ 406 >gi|254779042|ref|YP_003057147.1| flagellar MS-ring protein [Helicobacter pylori B38] gi|254000953|emb|CAX28897.1| Flagellar M-ring protein [Helicobacter pylori B38] Length = 567 Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 122/410 (29%), Positives = 206/410 (50%), Gaps = 30/410 (7%) Query: 23 LILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVSDVNRISVALSEANIDFRISD 78 LI A V++ +++F+ F + Y L+ L+ SD I L + I +++S Sbjct: 25 LIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEGLDSSDNALILQHLQQNQIPYKVSK 84 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 + +I +P V + RI LA+QG+P +S G+E+FD FG T F Q I +RA+EGE Sbjct: 85 D-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFD-TKDFGATDFDQNIKLIRAIEGE 141 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195 ++RTI+S++ I+ A VHI +P F P+ASVM++ + P + S I++L+ Sbjct: 142 LSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLK-LKPDMKLSPTQILGIKNLI 200 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAF 252 AAAVP L + +V +++ G+ + ++ N + + L Q ++ +E I LA Sbjct: 201 AAAVPKLTIDNVKIVNENGESIGEGDILENSKELALEQLHYKQNFENILENKIVNILAPI 260 Query: 253 LGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311 +G N A V AE + ++ + +DP++ V L + + + Q V N Sbjct: 261 VGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSN 320 Query: 312 MPHV---SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGR 367 + V D K P E +K + +NYE+ K+I+ + L RL+ AVVV+ G+ Sbjct: 321 IGPVQGLKDNKEP-----EKYEKSQNTTNYEVG-KTISEIKGEFGTLVRLNAAVVVD-GK 373 Query: 368 LTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 L A+ + D L +IN +V A G N RGD + +++ +F Sbjct: 374 YKIALKDGANTLEYEPLSDESLQKINALVKQAIGYNQNRGDDVAVSNFEF 423 >gi|300717231|ref|YP_003742034.1| flagellar basal-body M-ring protein [Erwinia billingiae Eb661] gi|299063067|emb|CAX60187.1| Flagellar basal-body M-ring protein [Erwinia billingiae Eb661] Length = 576 Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 108/413 (26%), Positives = 191/413 (46%), Gaps = 49/413 (11%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y LY L D I L++ NI ++ D G ++ VP+ V + R+ LA Q Sbjct: 46 LWAKQPEYRVLYNNLSDEDGGAIITQLTQMNIPYQFDDKGGALMVPAEKVHELRLRLAQQ 105 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + RVH+ MP Sbjct: 106 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKNVRVHLAMPK 163 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + PTASV + RA++ AI H+V+++V L G+VTV+D G Sbjct: 164 PSLFVREQKSPTASVTLTLQPGRALD---QGQISAIVHMVSSSVAGLPPGNVTVVDQAGH 220 Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT ++ R++ L +++ + I L +G N + V A+++ + ++ Sbjct: 221 LLTQSDNAGRDLNDAQLKYATDVENRFQSRIEAILNPIVGTGNVHAQVTAQIDFNAREQT 280 Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQPESAVTVEQNMPHVSDR-- 318 + Y P+S S+ SE ++QP A T P +++ Sbjct: 281 DEKYQPNSDPSTQAVRSRQTSDSEQIGGQYPGGVPGALSNQPAPANTAPVTTPAANNQNG 340 Query: 319 ------------------KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 ++ + + + +NYE++ + T + +++RLS+A Sbjct: 341 QNGQNGQNGNAAAANQGSSASTAKAGPSNTRTDNTTNYEVDRTILHTKMNVGEVQRLSVA 400 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 VVVN + G+ D+ L +I + A G + +RGD++ + + F Sbjct: 401 VVVNYK--ADAAGKPI--ALTDAQLKQIENLTREAMGYSDKRGDSLNVVNSPF 449 >gi|182412248|ref|YP_001817314.1| flagellar M-ring protein FliF [Opitutus terrae PB90-1] gi|177839462|gb|ACB73714.1| flagellar M-ring protein FliF [Opitutus terrae PB90-1] Length = 530 Score = 140 bits (352), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 107/331 (32%), Positives = 165/331 (49%), Gaps = 11/331 (3%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y LY +L D I L NI ++ G+++ VPS V K R+ LA++ Sbjct: 39 LWSRRPDYQLLYARLSEKDAASIIGQLQTQNIPHIVTAGGTAVQVPSDQVYKLRMDLASK 98 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLPS G+E+FDK FGL+ F+Q +RA++GE+ARTI + G+ AARV IV P+ Sbjct: 99 GLPSGD-GVGFEIFDK-GQFGLSDFVQRTNYLRAVQGELARTIMQLQGVRAARVMIVQPE 156 Query: 161 MG-SFRKIGARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 + TASV + + AIRHLVA AV L V V+D+ G +L+ Sbjct: 157 NRLLLTDQSVKSTASVFVDVGGKRLETDQVNAIRHLVANAVQGLAPDQVAVVDNRGHVLS 216 Query: 219 ANEMERNILGKSLSIV---QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 + LG + S + Q ++ + LAA +G N V AE++ + I E Sbjct: 217 EELKQDPTLGTASSQIRYRQQVEDYFAKKVETMLAAVIGPGNAVVRVSAEIDTEAVAITE 276 Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVT-VEQNMPHVSDRKVPLPRSLENTD--KK 332 +DP+ +V R+ +++D S S+ V V N+P + R + NT+ +K Sbjct: 277 ERFDPEGQVVRTQTVTEDTSSSAESRSAGGVVGVSANVPE-KNPGTEAARPVSNTEQSRK 335 Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 + YEIN ++ TT + ++ L+ AV V Sbjct: 336 NRSTTYEINRTTLNTTRNPGSVKNLTAAVFV 366 >gi|108562771|ref|YP_627087.1| flagellar MS-ring protein [Helicobacter pylori HPAG1] gi|107836544|gb|ABF84413.1| flagellar basal-body M-ring protein [Helicobacter pylori HPAG1] Length = 567 Score = 140 bits (352), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 122/410 (29%), Positives = 206/410 (50%), Gaps = 30/410 (7%) Query: 23 LILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVSDVNRISVALSEANIDFRISD 78 LI A V++ +++F+ F + Y L+ L+ SD I L + I +++S Sbjct: 25 LIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEGLDSSDNALILQHLQQNQIPYKVSK 84 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 + +I +P V + RI LA+QG+P +S G+E+FD FG T F Q I +RA+EGE Sbjct: 85 D-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFD-TKDFGATDFDQNIKLIRAIEGE 141 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195 ++RTI+S++ I+ A VHI +P F P+ASVM++ + P + S I++L+ Sbjct: 142 LSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLK-LKPDMKLSPTQILGIKNLI 200 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAF 252 AAAVP L + +V +++ G+ + ++ N + + L Q ++ +E I LA Sbjct: 201 AAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLHYKQNFENILENKIVNILAPI 260 Query: 253 LGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311 +G N A V AE + ++ + +DP++ V L + + + Q V N Sbjct: 261 VGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSN 320 Query: 312 MPHV---SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGR 367 + V D K P E +K + +NYE+ K+I+ + L RL+ AVVV+ G+ Sbjct: 321 IGPVQGLKDNKEP-----EKYEKSQNTTNYEVG-KTISEIKGEFGTLVRLNAAVVVD-GK 373 Query: 368 LTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 L A+ + D L +IN +V A G N RGD + +++ +F Sbjct: 374 YKIALKDGANTLEYEPLSDESLQKINALVKQAIGYNQNRGDDVAVSNFEF 423 >gi|126730036|ref|ZP_01745848.1| flagellar M-ring protein FliF [Sagittula stellata E-37] gi|126709416|gb|EBA08470.1| flagellar M-ring protein FliF [Sagittula stellata E-37] Length = 522 Score = 140 bits (352), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 121/411 (29%), Positives = 204/411 (49%), Gaps = 26/411 (6%) Query: 22 ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81 +++L + + + + ++ AR ++P Y LY LE + AL + + I G Sbjct: 1 MVVLGATLAMVLAVWGLARL-ASAPSYSLLYAGLENGAAGDVVKALEARGVQYDI--RGG 57 Query: 82 SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 +I VP S R+ LA++GLP++ GYEL D ++ FG TS M + RA EGE+AR Sbjct: 58 AIFVPDSDRDGLRLTLASEGLPANGGQ-GYELLDGLSGFGTTSQMFDAAYWRAKEGELAR 116 Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV-YKSAEAIRHLVAAAVP 200 TI S I +ARVHI F++ PTAS+ + ++ + A A+++LVA+AVP Sbjct: 117 TIVSNPQIASARVHIANSSANPFQRD-VTPTASISVTTTGGTLSAQQARALKYLVASAVP 175 Query: 201 NLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRS 260 L+ V V+D G L+ A E E G + A+ + + + + A +GV N Sbjct: 176 GLEPEGVAVIDGKGGLIGA-EAEHGA-GPTADDKAALLRD---RVQRLMEARVGVGN--- 227 Query: 261 AVVAELNMDT----QQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVS 316 V E+++DT + IR +DP+ +V S + RSE +Q VTV N+P + Sbjct: 228 -AVVEVSVDTVTESELIRSRSFDPEGRVVISTDTEESTDRSE-NQGGGNVTVASNLPDGN 285 Query: 317 DRKVPLPRSLENTDKKE--EQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR 374 ++ K E E+ N+E++ + T ++RL++AV+VN + G Sbjct: 286 AGG----GDTSSSQKAETRERVNFEVSETTREITRVPGAIKRLTVAVLVNGTYTEDGNGN 341 Query: 375 SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425 + + L + +V++A G + RGD IT+ S+ F + +G ++ Sbjct: 342 QTFEPLPEDELQALRDLVASAVGYDEERGDQITLKSLSFERPEGLGTGPLE 392 >gi|78776673|ref|YP_392988.1| flagellar MS-ring protein [Sulfurimonas denitrificans DSM 1251] gi|78497213|gb|ABB43753.1| Flagellar FliF M-ring protein [Sulfurimonas denitrificans DSM 1251] Length = 566 Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 120/385 (31%), Positives = 204/385 (52%), Gaps = 29/385 (7%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 Y+ L+ L D ++ L + NI + I DN + I VP + V K RI +A+ G+P +S Sbjct: 51 KYETLFDSLSSEDAAKVIEQLEKDNIPYEILDN-NIIKVPKNAVYKERIAIASLGIPKNS 109 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 G+ELFDK FG TSF Q + +RA+EGE++RTI S++ I +A V + +P F + Sbjct: 110 -GVGFELFDK-QEFGATSFDQNVKYLRAIEGELSRTINSLAPIESASVSLALPKETLFVE 167 Query: 167 IGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER 224 PTASVMI I S + I++LV+AAVPNL +V ++D+ G+ L ++ E Sbjct: 168 KQGEPTASVMITLIEGRKLSSKQIRGIKNLVSAAVPNLSASNVMLIDNDGETL-GDDDEM 226 Query: 225 NILGKSLSIVQAIQHEIEM----NINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYD 279 +G+ S+ Q + + E I + ++ F+G + + V E + Q VYD Sbjct: 227 AQMGELSSVQQNFKTKEEKKKQRKIIEVVSPFVGGEQKVVAQVTIEFDFSIQNSTSEVYD 286 Query: 280 PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSD-RKVPLPRSLENTDKKEEQSNY 338 P++ V RS +LS+ ++ + S P V + ++ + +++E +K +NY Sbjct: 287 PENVV-RSEQLSE--EKRDGSAPAEVGGVPGTVSNIGPVEGLASNKTIEKYEKNTGTTNY 343 Query: 339 EINTKSIATTHDNY-KLERLSIAVVVN---------KGRLTEVLGRSADQGKIDSYLAEI 388 E+ K+++TT + +++R++ AVVV+ G+ T L A +S L + Sbjct: 344 EVG-KTVSTTKSEFARIKRVTAAVVVDGKYNYKSDADGKPTSELEYEALS---ESDLEAL 399 Query: 389 NKIVSAATGINSRRGDTITITSMDF 413 +VS + GI+ RGD I++ ++ F Sbjct: 400 RALVSRSIGISEDRGDQISVQNLQF 424 >gi|308184148|ref|YP_003928281.1| flagellar MS-ring protein [Helicobacter pylori SJM180] gi|308060068|gb|ADO01964.1| flagellar MS-ring protein [Helicobacter pylori SJM180] Length = 567 Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 122/410 (29%), Positives = 206/410 (50%), Gaps = 30/410 (7%) Query: 23 LILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVSDVNRISVALSEANIDFRISD 78 LI A V++ +++F+ F + Y L+ L+ SD I L + I +++S Sbjct: 25 LIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFEGLDSSDNALILQHLQQNQIPYKVSK 84 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 + +I +P V + RI LA+QG+P +S G+E+FD FG T F Q I +RA+EGE Sbjct: 85 D-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFD-TKDFGATDFDQNIKLIRAIEGE 141 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195 ++RTI+S++ I+ A VHI +P F P+ASVM++ + P + S I++L+ Sbjct: 142 LSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLK-LKPDMKLSPTQILGIKNLI 200 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAF 252 AAAVP L + +V +++ G+ + ++ N + + L Q ++ +E I LA Sbjct: 201 AAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLHYKQNFENILENKIVNILAPI 260 Query: 253 LGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311 +G N A V AE + ++ + +DP++ V L + + + Q V N Sbjct: 261 VGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSN 320 Query: 312 MPHV---SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGR 367 + V D K P E +K + +NYE+ K+I+ + L RL+ AVVV+ G+ Sbjct: 321 IGPVQGLKDNKEP-----EKYEKSQNTTNYEVG-KTISEIKGEFGTLVRLNAAVVVD-GK 373 Query: 368 LTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 L A+ + D L +IN +V A G N RGD + +++ +F Sbjct: 374 YKIALKDGANALEYEPLSDESLKKINALVKQAIGYNQNRGDDVAVSNFEF 423 >gi|188527156|ref|YP_001909843.1| flagellar MS-ring protein [Helicobacter pylori Shi470] gi|188143396|gb|ACD47813.1| flagellar MS-ring protein [Helicobacter pylori Shi470] gi|308061699|gb|ADO03587.1| flagellar MS-ring protein [Helicobacter pylori Cuz20] Length = 567 Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 123/410 (30%), Positives = 206/410 (50%), Gaps = 30/410 (7%) Query: 23 LILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVSDVNRISVALSEANIDFRISD 78 LI A V++ +++F+ F + Y L+ +L+ SD I L + I ++I Sbjct: 25 LIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFERLDSSDNALILQHLQQNQIPYKILK 84 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 + +I +P V + RI LA+QG+P +S G+E+FD FG T F Q I +RA+EGE Sbjct: 85 D-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFD-TKDFGATDFDQNIKLIRAIEGE 141 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195 ++RTI+S++ I+ A VHI +P F P+ASVM++ + P + S I++L+ Sbjct: 142 LSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLK-LKPDMKLSPTQILGIKNLI 200 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAF 252 AAAVP L +V +++ G+ + ++ N + + L Q ++ +E I LA Sbjct: 201 AAAVPKLTTENVKIVNENGESIGEGDILENSKELALEQLRYKQNFENILENKIVNILAPI 260 Query: 253 LGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311 +G N A V AE + ++ + +DP++ V L + + + Q V N Sbjct: 261 VGGKNKVVARVNAEFDFSQRKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSN 320 Query: 312 MPHV---SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGR 367 + V D K P E +K + +NYE+ K+I+ + L RL+ AVVV+ G+ Sbjct: 321 IGPVQGLKDNKEP-----EKYEKSQNTTNYEVG-KTISEIKGEFGTLVRLNAAVVVD-GK 373 Query: 368 LTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 VL A+ + D L +IN +V A G N RGD + +++ +F Sbjct: 374 YKIVLKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDDVAVSNFEF 423 >gi|298736711|ref|YP_003729241.1| flagellar M-ring protein FliF [Helicobacter pylori B8] gi|298355905|emb|CBI66777.1| flagellar M-ring protein FliF [Helicobacter pylori B8] Length = 567 Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 121/410 (29%), Positives = 205/410 (50%), Gaps = 30/410 (7%) Query: 23 LILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVSDVNRISVALSEANIDFRISD 78 LI A V++ +++F+ F + Y L+ L+ SD I L + I +++S Sbjct: 25 LIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEGLDSSDNALILQHLQQNQIPYKVSK 84 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 + +I +P V + RI LA+QG+P +S G+E+FD FG T F Q I +RA+EGE Sbjct: 85 D-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFD-TKDFGATDFDQNIKLIRAIEGE 141 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195 ++RTI+S++ I+ A VHI +P F P+ASVM++ + P + S I++L+ Sbjct: 142 LSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLK-LKPDMKLSPTQILGIKNLI 200 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAF 252 AAAVP L + +V +++ G+ + ++ N + + L Q ++ +E I LA Sbjct: 201 AAAVPKLTIDNVKIVNENGESIGEGDIPENSKELALEQLHYKQNFENILENKIVNILAPI 260 Query: 253 LGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311 +G N A V AE + ++ + +DP++ V L + + + Q V N Sbjct: 261 VGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGTPKKQVGGVPGVVSN 320 Query: 312 MPHV---SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGR 367 + V D K P E +K + +NYE+ K+I+ + L RL+ AVVV+ G+ Sbjct: 321 IGPVQGLKDNKEP-----EKYEKSQNTTNYEVG-KTISEIKGEFGTLVRLNAAVVVD-GK 373 Query: 368 LTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 L + + D L +IN +V A G N RGD + +++ +F Sbjct: 374 YKIALKDGTNTLEYEPLSDESLQKINALVKQAIGYNQNRGDDVAVSNFEF 423 >gi|317010623|gb|ADU84370.1| flagellar MS-ring protein [Helicobacter pylori SouthAfrica7] Length = 567 Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 121/407 (29%), Positives = 206/407 (50%), Gaps = 24/407 (5%) Query: 23 LILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVSDVNRISVALSEANIDFRISD 78 LI A V++ +++F+ F + Y L+ +L+ SD I L + I +++S Sbjct: 25 LIAAGVLITALIVFLLIYPFKEKNYVQGGYGVLFERLDPSDNALILQHLQQNQIPYKVSK 84 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 + +I +P V + RI LA+QG+P +S G+E+FD FG T F Q I +RA+EGE Sbjct: 85 D-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFD-TKDFGATDFDQNIKLIRAIEGE 141 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195 ++RTI+S++ I+ A VHI +P F P+ASVM++ I P + S I++L+ Sbjct: 142 LSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLK-IKPDMKLSPTQILGIKNLI 200 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAF 252 AAAVP L + +V +++ G+ + ++ N + + L Q ++ +E I LA Sbjct: 201 AAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLHYKQNFENILENKIVNILAPI 260 Query: 253 LGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311 +G N A V AE + ++ + +DP++ V L + + + Q V N Sbjct: 261 VGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGTPKKQIGGVPGVVSN 320 Query: 312 MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGRLTE 370 + V K + E +K + +NYE+ K+I+ + L RL+ AVVV+ G+ Sbjct: 321 IGPVQGLKD--NKEQEKYEKSQNTTNYEVG-KTISEIKGEFGTLVRLNAAVVVD-GKYKI 376 Query: 371 VLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 L A+ + D L +IN +V A G N RGD + +++ +F Sbjct: 377 ALKDGANTLEYEPLSDESLQKINALVKQAIGYNQNRGDDVAVSNFEF 423 >gi|208434294|ref|YP_002265960.1| flagellar basal-body M-ring protein [Helicobacter pylori G27] gi|208432223|gb|ACI27094.1| flagellar basal-body M-ring protein [Helicobacter pylori G27] Length = 567 Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 122/410 (29%), Positives = 206/410 (50%), Gaps = 30/410 (7%) Query: 23 LILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVSDVNRISVALSEANIDFRISD 78 LI A V++ +++F+ F + Y L+ L+ SD I L + I +++S Sbjct: 25 LIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEGLDPSDNALILQHLQQNQIPYKVSR 84 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 + +I +P V + RI LA+QG+P +S G+E+FD FG T F Q I +RA+EGE Sbjct: 85 D-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFD-TKDFGATDFDQNIKLIRAIEGE 141 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195 ++RTI+S++ I+ A VHI +P F P+ASVM++ + P + S I++L+ Sbjct: 142 LSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLK-LKPDMKLSPTQILGIKNLI 200 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAF 252 AAAVP L + +V +++ G+ + ++ N + + L Q ++ +E I LA Sbjct: 201 AAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLHYKQNFENILENKIVNILAPI 260 Query: 253 LGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311 +G N A V AE + ++ + +DP++ V L + + + Q V N Sbjct: 261 VGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGTSKKQVGGVPGVVSN 320 Query: 312 MPHV---SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGR 367 + V D K P E +K + +NYE+ K+I+ + L RL+ AVVV+ G+ Sbjct: 321 IGPVQGLKDNKEP-----EKYEKSQNTTNYEVG-KTISEIKGEFGTLVRLNAAVVVD-GK 373 Query: 368 LTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 L A+ + D L +IN +V A G N RGD + +++ +F Sbjct: 374 YKIALKDGANTLEYEPLSDESLQKINALVKQAIGYNQNRGDDVAVSNFEF 423 >gi|116696304|ref|YP_841880.1| flagellar MS-ring protein [Ralstonia eutropha H16] gi|113530803|emb|CAJ97150.1| Flagellar M-ring protein [Ralstonia eutropha H16] Length = 576 Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 86/266 (32%), Positives = 144/266 (54%), Gaps = 12/266 (4%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + SP Y LY L D + +L + N+ ++ ++ G ++ VP+ V + R+ LA+Q Sbjct: 42 LWSRSPDYKVLYSNLSERDGGAVLQSLQQMNVPYKFAEGGGAVMVPAEKVHETRLRLASQ 101 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S + +G EL D FG++ F +++ R LEGE+AR+I+SI+ + +ARVH+ +P Sbjct: 102 GLPKSGT-AGMELMDN-QKFGISQFAEQVNYQRGLEGELARSIESIAAVQSARVHLAIPK 159 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + +PTAS+++ RAI+ AI HLV+++VP L ++++D G Sbjct: 160 PTLFVRERQKPTASIVLQLYPGRAID---EGQVAAISHLVSSSVPELTPKSISIVDQHGN 216 Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LL+ ER + L VQA++ I L +G DN R+ V A+++ + + Sbjct: 217 LLSNTGNERMLDATQLKYVQALEQNYLKRIEAILTPIVGKDNVRAQVTADVDFSIVEHTD 276 Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQ 301 Y P+ RS S+ Q SE++Q Sbjct: 277 ESYKPNQDPTRSAIRSQ--QTSESTQ 300 Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 44/86 (51%) Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE 387 ++++++ NYE++ + RLS+AVVVN + + G+ + + LA+ Sbjct: 373 SSNRRDSTVNYELDRSVRHVQQAPGGVRRLSVAVVVNYRQQADAKGKLVAEPLPPALLAQ 432 Query: 388 INKIVSAATGINSRRGDTITITSMDF 413 I + A G ++ RGD+I + + F Sbjct: 433 IQNLTKEAMGFSADRGDSINVVNSPF 458 >gi|291277395|ref|YP_003517167.1| flagellar M-ring protein [Helicobacter mustelae 12198] gi|290964589|emb|CBG40442.1| flagellar M-ring protein [Helicobacter mustelae 12198] Length = 566 Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 133/473 (28%), Positives = 224/473 (47%), Gaps = 35/473 (7%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVN----SPHYDNLYVKLEV 57 A+ Q+L FF+ + + R++++ VI F N S Y L+ L Sbjct: 5 AVFSQILNFFQRFSK--KQRVIVIGGVIAAIAFFVFLIVFATNGKSRSDGYSVLFEGLTP 62 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 D I L + I ++I N +I +P V + RI LA+QG+P +S G+E+FD Sbjct: 63 GDNALIIQHLQQNQIPYKIP-NEETILIPRDKVYEQRIELASQGIPKNSK-VGFEIFD-T 119 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 FG+T + +RA+EGE++RTI+S++ I A V I MP F PTASVM+ Sbjct: 120 KDFGMTDEEHRVKFLRAIEGELSRTIESLAPIQKANVLIAMPKSSVFVSQQTPPTASVML 179 Query: 178 RAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKSLS 232 + SA+ I++LVAAA+PNL + +V ++ G+ L ++ + + L Sbjct: 180 GIRQGAALTSAQIFGIKNLVAAAIPNLTVENVKLVSQNGEPLGEDDEITSSKEVAAAQLK 239 Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-----TQQIREIVYDPDSKVERS 287 Q I+ +E I L+ +G ++ VVA++N D + ++EI YDP++ V Sbjct: 240 YKQNIERALEAKILNILSPVVGGED---KVVAKVNADFDFSQRKSLQEI-YDPNNVVRSE 295 Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 L + + ++ Q N+ V R E +K + +NYE+ K++ Sbjct: 296 QNLEEKREGAQEKQIGGVPGAVSNIGPVQGLDSQNGR--EKYEKTQNTTNYEVG-KTVNE 352 Query: 348 THDNYK-LERLSIAVVVNKGRLTEVLGRSADQGKI------DSYLAEINKIVSAATGINS 400 + L RLS AVVV+ GR VL + + ++ + +IN +V A G N Sbjct: 353 IKGEFGVLTRLSAAVVVD-GRYKRVLNKEDGLEHMEFVPLSEAEMEKINLLVKQAIGYNQ 411 Query: 401 RRGDTITITSMDF-LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452 +RGD +T+++ +F ++Q F F L + L +L+ L++ Sbjct: 412 KRGDDVTVSNFEFNAKSQTFVPEGKMDRFASKLEMYLKPFTPLLKYLIVALII 464 >gi|74101647|gb|AAZ99737.1| FliFL [Aeromonas hydrophila] Length = 580 Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 114/417 (27%), Positives = 203/417 (48%), Gaps = 46/417 (11%) Query: 22 ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81 I +LA+++ I++ + + +S +Y LY K E+ D I L + + FR+ + Sbjct: 39 IALLAAIVAGTIVVIL----WTSSKNYVPLYGKQELYDTANIMEMLEKEQVPFRLEKSTG 94 Query: 82 SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 I VP S + R+ LAA+G+ ++ +G E D V G + FM+ ALEGE+AR Sbjct: 95 QILVPESQLAHVRMALAARGV-RAAMPAGLEGLDNVTGLGTSEFMEGARYRHALEGELAR 153 Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIG---ARPTASVMIRAINPSV---YKSAEAIRHLV 195 TI S+ + +ARVH+ +P F +G +P+ASVM+ + P EAI +LV Sbjct: 154 TIISLDAVRSARVHLAIPKRTLF--VGRDEEKPSASVML-DLQPGQAMELGQVEAIANLV 210 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK----SLSIVQAIQHEIEMNINKALAA 251 A ++ + G VT++D G+LL+A ++ GK + V+ ++ I + L Sbjct: 211 AGSISGMKPGAVTIVDQAGQLLSAELGDKAGFGKQSVQQMEYVRKLEQYIRQRASDMLYP 270 Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE-- 309 LG NFR + A++N + + + DP V +K++ +S+ + A+ + Sbjct: 271 MLGTGNFRVQIAADVNFNAVEETQQQLDPQGVV------TKESTKSDKTIDALALGIPGA 324 Query: 310 -QNMPHVSDRKVPLPRSLENTDKKEEQSN------------YEINTKSIATTHDNYKLER 356 N P + K P + + T E Q N YE + + T + +LE+ Sbjct: 325 LSNRPPETTPKSEQPAANQGTTSSETQKNDSRTERQEINKQYENSRTIVHTRYQQGRLEK 384 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 +++++++N+ + G SA+Q L +I ++V + G + RGD I++ DF Sbjct: 385 MNVSILLNQQSAPKD-GWSAEQ------LEQIRQMVERSVGFDDARGDQISLQVFDF 434 >gi|317012189|gb|ADU82797.1| flagellar MS-ring protein [Helicobacter pylori Lithuania75] Length = 567 Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 122/410 (29%), Positives = 206/410 (50%), Gaps = 30/410 (7%) Query: 23 LILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVSDVNRISVALSEANIDFRISD 78 LI A V++ +++F+ F + Y L+ L+ SD I L + I +++S Sbjct: 25 LIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEGLDSSDNALILQHLQQNQIPYKVSK 84 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 + +I +P V + RI LA+QG+P +S G+E+FD FG T F Q I +RA+EGE Sbjct: 85 D-DTILIPRDKVYEERITLASQGIPKTSK-VGFEIFD-TKDFGATDFDQNIKLIRAIEGE 141 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195 ++RTI+S++ I+ A VHI +P F P+ASVM++ + P + S I++L+ Sbjct: 142 LSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLK-LKPDMKLSPTQILGIKNLI 200 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAF 252 AAAVP L + +V +++ G+ + ++ N + + L Q ++ +E I LA Sbjct: 201 AAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLHYKQNFENILENKIVNILAPI 260 Query: 253 LGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311 +G N A V AE + ++ + +DP++ V L + + + Q V N Sbjct: 261 VGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSN 320 Query: 312 MPHV---SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGR 367 + V D K P E +K + +NYE+ K+I+ + L RL+ AVVV+ G+ Sbjct: 321 IGPVQGLKDNKEP-----EKYEKSQNTTNYEVG-KTISEIKGEFGTLVRLNAAVVVD-GK 373 Query: 368 LTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 L A+ + D L +IN +V A G N RGD + +++ +F Sbjct: 374 YKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDDVAVSNFEF 423 >gi|225159031|ref|ZP_03725341.1| flagellar M-ring protein FliF [Opitutaceae bacterium TAV2] gi|224802410|gb|EEG20672.1| flagellar M-ring protein FliF [Opitutaceae bacterium TAV2] Length = 532 Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 124/442 (28%), Positives = 201/442 (45%), Gaps = 33/442 (7%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y LY +L D I AL + +R S G S+ VP++ V + R+ LAA+ Sbjct: 39 IWSRQPDYQLLYGRLADKDAASIISALQAQGVPYRASAGGGSVYVPANQVHRLRMDLAAK 98 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP G+E+FDK FGL+ F+Q RAL+GE+ARTI + G+ ARV IV P+ Sbjct: 99 GLPGGE-GVGFEIFDK-GQFGLSDFVQRTNYTRALQGELARTISQLDGVARARVMIVQPE 156 Query: 161 MGSFR-KIGARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 G +PTASV + P + ++ +IR+LVA AV L V V+D G++L+ Sbjct: 157 NRLLLIDQGVKPTASVFVELTGPRLDTEAVNSIRNLVANAVQGLKPAQVAVVDQKGRVLS 216 Query: 219 ANEMERNILGKSLSIV---QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 + + L + S + Q ++ + L +G N V AE++ + E Sbjct: 217 SELQDDPTLADASSQMRYRQQVEEYFAKKVESLLLPVVGAGNAVVRVSAEIDTEAATRVE 276 Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN--MPHVSDRKVPLPRSLENTDKKE 333 YDPD +V R+ ++D S ++ V V N P +D+ P + +K Sbjct: 277 ERYDPDGQVVRTQTSTEDVTNSSEARSGGVVGVTANATTPPPADQA--RPTVTNDQTRKN 334 Query: 334 EQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVS 393 +YEIN TT + L+ AV + G +A + ++ +A + ++V Sbjct: 335 RTLSYEINRTLTNTTRSPGTILGLTAAVFIAP--RPPAAGGAAPGPRTEAEIAALRQVVV 392 Query: 394 AATGINSRRG----DTITITSMDFLE-------NQLFNSGTVQVSFMDILSRHFATVINA 442 A G+ G + +T+ + F Q+ VQ +++ SR+ A + Sbjct: 393 NALGLRPSPGRRIEELVTLQEVPFQAAGVDDRIEQIRTETRVQ-GWIEAASRYVAVAVAV 451 Query: 443 LVFLVGTLLVTFLGLHALRRLH 464 L+F F+ L+R H Sbjct: 452 LIF--------FIFWRMLKRQH 465 >gi|94500269|ref|ZP_01306802.1| flagellar M-ring protein [Oceanobacter sp. RED65] gi|94427568|gb|EAT12545.1| flagellar M-ring protein [Oceanobacter sp. RED65] Length = 577 Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 113/424 (26%), Positives = 200/424 (47%), Gaps = 26/424 (6%) Query: 48 YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 Y L LE + I L E ID+RI+ ++VP + + AR+ LA + + Sbjct: 80 YRPLISNLEDYNAKEILQTLDEKGIDYRINPTTGIVTVPEAEIHDARLALAPI-VAEIDT 138 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 G EL D+ G + F++ R LEGE+ARTI S+ + ARVH+ +P F + Sbjct: 139 TVGLELLDQEQGLGTSQFIESARYRRGLEGELARTIASLQSVRNARVHLALPKQSVFVRD 198 Query: 168 GARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMER 224 P ASV + K AEAI +L+A+++P L + +VT++D G LL+ + E Sbjct: 199 DREPRASVFLEIYGGKGLKREQAEAIINLIASSIPELPVENVTLVDQKGNLLSKEGQDEE 258 Query: 225 NILG-KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK 283 ++L K + +++ + + + L LG DNF++ V A+++ + + +++PD Sbjct: 259 DLLATKQFDYTRKVENSLHQRVQRILEPVLGSDNFQAEVSADVDFTMVEQTQELFNPDLI 318 Query: 284 VERSIRL--SKDAQRSE-------TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEE 334 RS + + ++ E ++QP A V + V + P+ + +E K E Sbjct: 319 ALRSEQTLNQEKVEKPEGGIPGALSNQPPGAAEVPE---EVDENGNPVAQPIER--KSEA 373 Query: 335 QSNYEINTKSIATTHDNYKLERLSIAVVVN-KGRLTEVLGRSADQGKIDSYLAEINKIVS 393 NYE++ T H +L RL+++V VN + ++ G ++ L + +V Sbjct: 374 TRNYEVDRTLSHTQHQVGRLRRLTVSVAVNDREKVNPETGVVESVPWTEAELKRLELLVK 433 Query: 394 AATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVT 453 + G N+ RGD++++ N LF G V++ D + + I V LL+ Sbjct: 434 DSVGFNAARGDSVSVV------NSLFLGGAVELGEPDFWKQPWFWEIVKQVLAGLFLLIL 487 Query: 454 FLGL 457 G+ Sbjct: 488 IFGV 491 >gi|261839198|gb|ACX98963.1| flagellar M-ring protein FliF [Helicobacter pylori 52] Length = 567 Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 122/410 (29%), Positives = 206/410 (50%), Gaps = 30/410 (7%) Query: 23 LILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVSDVNRISVALSEANIDFRISD 78 LI A V++ +++F+ F + Y L+ +L+ SD I L + I ++I Sbjct: 25 LIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFERLDSSDNALILQHLQQNQIPYKILK 84 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 + +I +P V + RI LA+QG+P +S G+E+FD FG T F Q I +RA+EGE Sbjct: 85 D-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFD-TKDFGATDFDQNIKLIRAIEGE 141 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195 ++RTI+S++ I+ A VHI +P F P+ASVM++ + P + S I++L+ Sbjct: 142 LSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLK-LKPDMKLSPTQILGIKNLI 200 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAF 252 AAAVP L + +V +++ G+ + ++ N + + L Q ++ +E I LA Sbjct: 201 AAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLRYKQNFENILENKIVNILAPI 260 Query: 253 LGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311 +G N A V AE + ++ + +DP++ V L + + + Q V N Sbjct: 261 VGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSN 320 Query: 312 MPHV---SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGR 367 + V D K P E +K + +NYE+ K+I+ + L RL+ AVVV+ G+ Sbjct: 321 IGPVQGLKDNKEP-----EKYEKSQNTTNYEVG-KTISEIKGEFGTLVRLNAAVVVD-GK 373 Query: 368 LTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 L A+ + D L +IN +V A G N RGD + +++ +F Sbjct: 374 YKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDDVAVSNFEF 423 >gi|254487125|ref|ZP_05100330.1| flagellar M-ring protein FliF, putative [Roseobacter sp. GAI101] gi|214043994|gb|EEB84632.1| flagellar M-ring protein FliF, putative [Roseobacter sp. GAI101] Length = 422 Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 122/417 (29%), Positives = 207/417 (49%), Gaps = 27/417 (6%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 AI+ Q L + +G + R ++ A++ + +L M+ V SP LY LE Sbjct: 3 AIVQQFLNIW-AGLTFRRQLTIVAATLAMFFGVLAMSK--MVASPTLTLLYAGLESGAAG 59 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 + AL + + + + G SI V + + R+ LA++GLP++ N GYEL D + FG Sbjct: 60 DVVRALEQRGVVYEV--RGGSIFVDAKARDELRLTLASEGLPANG-NRGYELLDNLTGFG 116 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 TS M + RA EGE+ARTI + I ARVHI F++ G P ASV + Sbjct: 117 TTSQMFDAAYWRAKEGELARTIVANPQISMARVHIAGTGSNPFQR-GVVPKASVSLTPNG 175 Query: 182 PSVYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240 + + A+A+R LVA+AV L DV V+D+ G L+ +++ ++ Q + Sbjct: 176 GEISAAEAKAVRFLVASAVAGLSPDDVAVIDANGSLIGSSD-------DAMPTSQG-DDK 227 Query: 241 IEM---NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 EM + + L A +G+ N V + +++ +RE +DP+ +V +S D + Sbjct: 228 AEMFKEKVQRILEARVGLGNAIVEVSVDTETESESVRERRFDPEGRVA----ISTDTEER 283 Query: 298 ETSQPESA---VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 S ++ VTV N+P ++ + S + + E+ NYE++ + Sbjct: 284 SNSSSDAGSGDVTVASNLPS-NNGQPGGDSSSSSNSETRERVNYEVSETEREIVRAPGAV 342 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 +R+++AV++N T+ G Q + D+ L + ++VS+A G ++ RGD ITI SM Sbjct: 343 KRITVAVLINDAIATDESGVETSQPRDDTELEALRELVSSAVGFDAERGDIITIKSM 399 >gi|254496581|ref|ZP_05109449.1| flagellar MS-ring protein [Legionella drancourtii LLAP12] gi|254354205|gb|EET12872.1| flagellar MS-ring protein [Legionella drancourtii LLAP12] Length = 547 Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 116/444 (26%), Positives = 215/444 (48%), Gaps = 37/444 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 MA+ D SL R + L + + + +A + P+Y LY ++ D Sbjct: 1 MALADNASMVAAKFASLSIPRQIGLLIGLAASVAVGLAVVLWSRDPNYVPLYTQMNTRDA 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 + AL I+F+I +N S+I +PS+ + R+ LAA+GLP S ELF N+F Sbjct: 61 AEVVSALERNGIEFKIDNNNSTILIPSANLQSTRLKLAAEGLPRDPVAS-EELFSSGNAF 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 + FM+ +ALE E+ARTI + I AARVH+ +P +F + +P+ASV I Sbjct: 120 NSSQFMENARYKQALEAELARTISKFNDIKAARVHLAIPRESAFVRDIHQPSASVFI--- 176 Query: 181 NPSVYKSAEAIRH-------LVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL----GK 229 VY E +H LVA+++PNL VTV+D G+LL NE L + Sbjct: 177 --DVYSGLELKKHTVSAIVNLVASSIPNLSASRVTVVDQDGQLL--NEGSGQTLFTDTER 232 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD---SKVER 286 L Q ++ + I L LG R+ V A+++ + + + +++P+ + E+ Sbjct: 233 FLDYRQNLEQQYAQKIQDILTPLLGYGRVRAKVSADIDFTSYEQTQEMFNPELPSLRSEQ 292 Query: 287 SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSL-------------ENTDKKE 333 +++ +A P + Q P ++++ P + +++D + Sbjct: 293 TMQEKHNAASDAIGVPGTLSNTPQPNPSLNNKNPAAPNAQQQQQPAQSSSDANQSSDTRT 352 Query: 334 EQS-NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY-LAEINKI 391 + + N+E++ T + ++RLS+AV+V+ + + ++ + + + + +I + Sbjct: 353 QSTKNFELDKTISHTKNQPGTIKRLSVAVLVDNPAIMDTKTKTMIKKALTAKEIDQIKLL 412 Query: 392 VSAATGINSRRGDTITITSMDFLE 415 V+ A G+NS+RGD++ + + DF++ Sbjct: 413 VADAIGLNSQRGDSLNVINSDFVK 436 >gi|297617138|ref|YP_003702297.1| flagellar M-ring protein FliF [Syntrophothermus lipocalidus DSM 12680] gi|297144975|gb|ADI01732.1| flagellar M-ring protein FliF [Syntrophothermus lipocalidus DSM 12680] Length = 512 Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 120/401 (29%), Positives = 203/401 (50%), Gaps = 27/401 (6%) Query: 21 RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80 ++LI +V+L + L M + +Y+ LY L V D I+ L E I +R+SD G Sbjct: 27 KVLISGAVLLTLVSLGMLLSS-QTAKNYEPLYSGLSVEDAAAITKKLDELKISYRLSDEG 85 Query: 81 SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140 S+I VPS + R+ LA +GLP + +G+ELF + SFG T + + + AL+GE+ Sbjct: 86 STILVPSEQKYQVRLQLAGEGLPKGT--AGFELF-QSTSFGETETDKRVKYLTALQGELV 142 Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-INPSVY-KSAEAIRHLVAAA 198 RTI+S+ I +ARVH+V+P+ + A TASV+++ I + + I HLVA + Sbjct: 143 RTIESLDKIESARVHLVLPEPRLYVDQEAPATASVVLKVKIGEELTNREISGIVHLVANS 202 Query: 199 VPNLDMGDVTVLDSTGKLLTANEMERNILGKS-LSIVQ-AIQHEIEMNINKA----LAAF 252 V L +V V+D G LL+A+ + + + LS+ Q A++ ++E +A L A Sbjct: 203 VEKLKPENVVVVDQYGNLLSADIPSADSMASAELSVQQMAVKRQLEREKQQAVQSMLDAT 262 Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNM 312 LG V AELN D + +DP+ +V S +++ S + ++ V+ N+ Sbjct: 263 LGPGKSVVRVNAELNFDEVEQYSQDFDPEQRVVVSKHTVEESNTSSNTGAAASPGVDTNV 322 Query: 313 PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372 P + S ++K E+ NYE + T ++R+++AV+V++G Sbjct: 323 PTYQGTE-GQGTSSSTSEKTEQTVNYEGDKVETKTKVAPGAIKRMTVAVLVDEG------ 375 Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 +S EI + V A G + +R D++ ++ M F Sbjct: 376 --------FESKREEIVEAVKNAVGADEKRNDSVYVSFMKF 408 >gi|220917658|ref|YP_002492962.1| flagellar M-ring protein FliF [Anaeromyxobacter dehalogenans 2CP-1] gi|219955512|gb|ACL65896.1| flagellar M-ring protein FliF [Anaeromyxobacter dehalogenans 2CP-1] Length = 533 Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 114/414 (27%), Positives = 201/414 (48%), Gaps = 26/414 (6%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L +LL +G L +L+ +++ + + A R +S Y + L D Sbjct: 11 LPRLLGALPAGLKL----VLVAGALVAIGVAALSAVR---SSEAYQYAFTNLTPEDSAEA 63 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + AL A + +R+ GS+++VP+S V AR+ LA GLP G+E+FD+ G++ Sbjct: 64 AGALGAAGVPYRLEAGGSALAVPASRVYDARLLLAGAGLPRGG-GVGFEIFDR-GDLGVS 121 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 F Q++ RA EGE+ARTI ++ + +ARVH+ +P+ G +R RP A+ ++ + P Sbjct: 122 EFTQKVNLRRATEGELARTISRLAQVRSARVHLTLPEKGLYRDQD-RPAAAAVVVNLQPG 180 Query: 184 V---YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240 + IRHLV++AV L V+V+D G++L+ + LG+++ + ++ + Sbjct: 181 RTLDQREISGIRHLVSSAVAGLAPAGVSVVDGRGEVLS----DEGPLGEAMGYQRRMERD 236 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 +E I L +G + V A L+ Q V DPDS RS R S+ + Sbjct: 237 LERRIVDLLGQAVGPGAVVARVTASLDQTEVQSSAQVLDPDSATLRSERKLTQQSSSDGA 296 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 P N P R + +++ NY+++T + + +LER+S+A Sbjct: 297 GPAGVAGAAANQPLAPPAPAAGARGRSSASTEDQTRNYDVSTTTTTSVARVPRLERISVA 356 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 V+V+ +A + D+ +A + ++ A G ++ RGDT I+S F+ Sbjct: 357 VLVDG---------AAGAPRADAEIARLGELAKRAVGFDADRGDTFEISSSPFV 401 >gi|317406225|gb|EFV86471.1| flagellar M-ring protein FliF [Achromobacter xylosoxidans C54] Length = 558 Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 123/459 (26%), Positives = 209/459 (45%), Gaps = 64/459 (13%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + + P Y L+ L+ D I AL N+ ++ +D G+++ VP+ V AR+ LA+Q Sbjct: 45 MWSSEPKYKVLFSNLDDRDGGAIVTALGTMNVPYKYNDTGTALLVPADRVYDARLQLASQ 104 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S G+EL D FG + F ++I R LEGE+AR+I+S+ + ARVH+ MP Sbjct: 105 GLPRGGS-VGFELMDNAR-FGASQFAEQINYQRGLEGELARSIESMHTVQHARVHLAMPR 162 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + PTASV++ A+ AI LVA++VP L +V+++D G+LL+ Sbjct: 163 QSLFVRERQPPTASVLLNVYPGRSLSDAQVSAISWLVASSVPELTAENVSIVDQNGRLLS 222 Query: 219 ANEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 A E R + + +V+ + I L +G N + AE++ ++ V Sbjct: 223 APTGEGRGMDADQMRMVRETEQRTVERILTILNPLVGPGNVHAQASAEMDFSRREETSEV 282 Query: 278 YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV------SDRKVPLPRSLEN--- 328 Y P+ + ++ S+ Q SE++Q + Q +P ++ + P+ + Sbjct: 283 YRPNQEPGQAAIRSQ--QTSESNQ--RGINPAQGVPGALSNQPPANAQAPIANPPQTQPP 338 Query: 329 -----------------------------TDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 +D+++ +NYE++ L+RLS+ Sbjct: 339 RPGQPQQQGQQQQQQTATGAGAQGAGGTVSDRRDATTNYEVDRTISHIKQPVGMLKRLSV 398 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AVVVN R + Q L+++ +V A G + RGD++ + N F Sbjct: 399 AVVVNYVRDKD----GEPQALPPEELSKLTNLVREAMGYSESRGDSLNLV------NSQF 448 Query: 420 NSGTVQVSFM---DILSRHFATVINALVFLVGTLLVTFL 455 N G V +++S F T+ L +LVG +L +L Sbjct: 449 NDGPPAVPMWRDPEMIS-LFKTI---LAWLVGGVLALWL 483 >gi|15611393|ref|NP_223044.1| flagellar MS-ring protein [Helicobacter pylori J99] gi|4154846|gb|AAD05899.1| FLAGELLAR M-RING PROTEIN [Helicobacter pylori J99] Length = 567 Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 122/410 (29%), Positives = 206/410 (50%), Gaps = 30/410 (7%) Query: 23 LILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVSDVNRISVALSEANIDFRISD 78 LI A V++ +++F+ F + Y L+ +L+ SD I L + I +++ Sbjct: 25 LIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFERLDSSDNALILQHLQQNQIPYKVLK 84 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 + +I VP V + RI LA+QG+P +S G+E+FD FG T F Q I +RA+EGE Sbjct: 85 D-DTILVPKDKVYEERITLASQGIPKTSK-VGFEIFD-TKDFGATDFDQNIKLIRAIEGE 141 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195 ++RTI+S++ I+ A VHI +P F P+ASVM++ + P + S I++L+ Sbjct: 142 LSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLK-LKPDMKLSPTQILGIKNLI 200 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAF 252 AAAVP L + +V +++ G+ + ++ N + + L Q ++ +E I LA Sbjct: 201 AAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLRYKQNFENILENKIVNILAPI 260 Query: 253 LGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311 +G N A V AE + ++ + +DP++ V L + + + Q V N Sbjct: 261 VGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSN 320 Query: 312 MPHV---SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGR 367 + V D K P E +K + +NYE+ K+I+ + L RL+ AVVV+ G+ Sbjct: 321 IGPVQGLKDNKEP-----EKYEKSQNTTNYEVG-KTISEIKGEFGTLVRLNAAVVVD-GK 373 Query: 368 LTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 L A+ + D L +IN +V A G N RGD + +++ +F Sbjct: 374 YKIALEDGANALEYEPLSDESLKKINALVKQAIGYNQNRGDDVAVSNFEF 423 >gi|332559789|ref|ZP_08414111.1| FliF2 [Rhodobacter sphaeroides WS8N] gi|332277501|gb|EGJ22816.1| FliF2 [Rhodobacter sphaeroides WS8N] Length = 533 Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 124/450 (27%), Positives = 221/450 (49%), Gaps = 27/450 (6%) Query: 18 GRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS 77 GR R +++ + + + + + P LY L+ + + AL + + Sbjct: 18 GRRRAVVVGATVAM-FLAVLGLSQLAGRPPMALLYAGLQGAAAGEVVTALEAQGAAYEV- 75 Query: 78 DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137 G S+ V ++ + R+ LA +GLP++ + +GYEL D ++ FG TS M + +RA EG Sbjct: 76 -RGDSVYVEAARRDEIRMKLAGEGLPATGA-AGYELLDGLSGFGTTSQMFDAAYLRAKEG 133 Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVA 196 E+ARTI + + AARVHI P F++ RPTASV + +V + A A +HLVA Sbjct: 134 ELARTILASPQVKAARVHIAQPAAQPFQRE-QRPTASVTVTTSGGAVTANQARAFKHLVA 192 Query: 197 AAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVD 256 +AV L DV+V+DS L+ + + E++ + + ++ E+ N+ + L A G Sbjct: 193 SAVAGLQPEDVSVIDSVMGLIRSGD-EKD---SATAAGESRAAELRSNVERLLEARAGPG 248 Query: 257 NFRSAVVAELNMDTQQIREIV----YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNM 312 V E+++D + RE + +DP +V I + S +++P VTV N+ Sbjct: 249 R----AVVEVSVDVETARESIVEKSFDPKGRV--PISSETQEKSSNSTEPSPDVTVASNL 302 Query: 313 PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372 P + +S +T + E N+E++ + RL++AV+V+ + Sbjct: 303 PEGDAKGGTGGKS--STSETRETVNFEVSQTQRELMRQPGAIRRLTVAVLVDGIKTVADD 360 Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDIL 432 G + + + LA + ++V +A G++ RGD +T+ S+ F +GT ++ L Sbjct: 361 GTVGWEPRPEEELAVLRELVGSAVGLDESRGDRLTLRSLAF--ETPPEAGT--LAETGFL 416 Query: 433 SRHFATVINALVFL-VGTLLVTFLGLHALR 461 SR A + +L+ + V L+ LGL +R Sbjct: 417 SRLGAFDLMSLIQIGVLALVALILGLFVVR 446 >gi|260574387|ref|ZP_05842391.1| flagellar M-ring protein FliF [Rhodobacter sp. SW2] gi|259023283|gb|EEW26575.1| flagellar M-ring protein FliF [Rhodobacter sp. SW2] Length = 533 Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 120/417 (28%), Positives = 206/417 (49%), Gaps = 20/417 (4%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 R RI+++ + I + + + +R N+P LY L+ + AL + + + + Sbjct: 14 RRRIIVIGATIAMFLAVLGLSRM-ANTPSMALLYAGLDNRAAGEVVAALDQRGVAYEV-- 70 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 G SI V + R+ LA +GLP+ + +GYEL D ++ FG TS M + RA EGE Sbjct: 71 KGDSILVDVTQRDSLRMTLATEGLPTMGA-AGYELLDGLSGFGTTSQMFDAAYWRAKEGE 129 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAA 198 +ARTI + I AARVHI FR+ + + A+A++HL+AAA Sbjct: 130 LARTILANPQIRAARVHIAQAPAQPFRRDVLATASVTVTTTTGSLPPLQAKALKHLIAAA 189 Query: 199 VPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNF 258 V + DV+V+D+ G L+ A + + + G Q E+ N+ + LAA +G Sbjct: 190 VAGMQPEDVSVIDTVGGLIMAAD-DNTLTGNG---GQDRAAELRTNVERLLAARVGPGKS 245 Query: 259 RSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA--QRSETSQPESAVTVEQNMPHVS 316 V ++ + + I E +DP +V +S DA + S ++P VTV N+P + Sbjct: 246 VVEVSVDVVTERESITERKFDPQGRVP----ISTDATEKTSSATEPSGDVTVASNLPQGN 301 Query: 317 DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA 376 +S T + E +N+E++ S + +LS+AV+V+ ++T G + Sbjct: 302 AAAGGNGQS--QTSETRELTNFEVSETSRELLRVPGAVRKLSVAVLVDGLQVTAADGTIS 359 Query: 377 DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVS--FMDI 431 Q + + LA + ++V++A G++ RGD +T+ S+ F L +GT+ + F DI Sbjct: 360 WQPRPEEELAVLRELVASAVGLDETRGDVLTLKSLAF--EPLAEAGTLAEASMFADI 414 >gi|317181691|dbj|BAJ59475.1| flagellar MS-ring protein [Helicobacter pylori F57] Length = 567 Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 122/410 (29%), Positives = 205/410 (50%), Gaps = 30/410 (7%) Query: 23 LILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVSDVNRISVALSEANIDFRISD 78 LI A V++ +++F+ F + Y L+ +L+ SD I L + I ++I Sbjct: 25 LIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFERLDSSDNALILQHLQQNQIPYKILK 84 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 + +I +P V + RI LA+QG+P +S G+E+FD FG T F Q I +RA+EGE Sbjct: 85 D-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFD-TKDFGATDFDQNIKLIRAIEGE 141 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195 ++RTI+S++ I+ A VHI +P F P+ASVM++ + P + S I++L+ Sbjct: 142 LSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLK-LKPDMKLSPTQILGIKNLI 200 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAF 252 AAAVP L +V +++ G+ + ++ N + + L Q ++ +E I LA Sbjct: 201 AAAVPKLTTENVKIVNENGESIGEGDILENSKELALEQLRYKQNFENILENKIVNILAPI 260 Query: 253 LGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311 +G N A V AE + ++ + +DP++ V L + + + Q V N Sbjct: 261 VGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGTPKKQVGGVPGVVSN 320 Query: 312 MPHV---SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGR 367 + V D K P E +K + +NYE+ K+I+ + L RL+ AVVV+ G+ Sbjct: 321 IGPVQGLKDNKEP-----EKYEKSQNTTNYEVG-KTISEIKGEFGTLVRLNAAVVVD-GK 373 Query: 368 LTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 L A+ + D L +IN +V A G N RGD + +++ +F Sbjct: 374 YKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDDVAVSNFEF 423 >gi|217031571|ref|ZP_03437076.1| hypothetical protein HPB128_21g129 [Helicobacter pylori B128] gi|216946771|gb|EEC25367.1| hypothetical protein HPB128_21g129 [Helicobacter pylori B128] Length = 567 Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 121/410 (29%), Positives = 205/410 (50%), Gaps = 30/410 (7%) Query: 23 LILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVSDVNRISVALSEANIDFRISD 78 LI A V++ +++F+ F + Y L+ L+ SD I L + I +++S Sbjct: 25 LIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEGLDSSDNALILQHLQQNQIPYKVSK 84 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 + +I +P V + RI LA+QG+P +S G+E+FD FG T F Q I +RA+EGE Sbjct: 85 D-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFD-TKDFGATDFDQNIKLIRAIEGE 141 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195 ++RTI+S++ I+ A VHI +P F P+ASVM++ + P + S I++L+ Sbjct: 142 LSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLK-LKPDMKLSPTQILGIKNLI 200 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAF 252 AAAVP L + +V +++ G+ + ++ N + + L Q ++ +E I LA Sbjct: 201 AAAVPKLTIDNVKIVNENGESIGEGDILENSKELALEQLHYKQNFENILENKIVNILAPI 260 Query: 253 LGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311 +G N A V AE + ++ + +DP++ V L + + + Q V N Sbjct: 261 VGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGTPKKQVGGVPGVVSN 320 Query: 312 MPHV---SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGR 367 + V D K P E +K + +NYE+ K+I+ + L RL+ AVVV+ G+ Sbjct: 321 IGPVQGLKDNKEP-----EKYEKSQNTTNYEVG-KTISEIKGEFGTLVRLNAAVVVD-GK 373 Query: 368 LTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 L + + D L +IN +V A G N RGD + +++ +F Sbjct: 374 YKIALKDGTNTLEYEPLSDESLQKINALVKQAIGYNQNRGDDVAVSNFEF 423 >gi|32490809|ref|NP_871063.1| hypothetical protein WGLp060 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166015|dbj|BAC24206.1| fliF [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 569 Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 151/580 (26%), Positives = 264/580 (45%), Gaps = 96/580 (16%) Query: 24 ILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSI 83 +L S ++ I L + ++ S +Y LY + D I LS NI ++ S N SI Sbjct: 32 LLLSFGVIGIALSIVLITWLQSSNYQVLYTNISDQDSGDIISELSTLNIPYKFSKNNGSI 91 Query: 84 SVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTI 143 VP + + R LA + LP S G+E+ D +SFG++ F + I RALEGEIARTI Sbjct: 92 MVPEDKIYETRFLLAQKNLPKGGS-IGFEILDN-SSFGISQFNENINYQRALEGEIARTI 149 Query: 144 QSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAA 198 ++I+ I +ARVHI +P F + +AS+ + R ++ + +AIR LV+ Sbjct: 150 ETINSIKSARVHIAIPKSSVFIRDNKPSSASITLGLHAGRTLDKN---EIQAIRWLVSGT 206 Query: 199 VPNLDMGDVTVLDSTGKLLTA---NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255 VPNL + ++ ++D+ GKLL N ++NI L ++ I+ E I + L +G Sbjct: 207 VPNLPVSNIVLVDNYGKLLAYPDNNNDDKNIT--QLQYIKDIELEYRRRIEEILIPIVGF 264 Query: 256 DNFRSAVVAELNM-DTQQIREIVYDPDSKV-ERSIRLSK---------------DAQRSE 298 +N ++ V A+++ T+Q E + P++ E SIR + A ++ Sbjct: 265 NNVKAEVTAQIDFTKTEQTSE-KHKPNTNPNEMSIRSQQITENNNFSQVAEGVPGALSNQ 323 Query: 299 TSQPESAVTVEQN--------------MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKS 344 SQ SA E+N + S KV P +++ KE+ NYEI+ Sbjct: 324 PSQVSSANIDEENEEIDKDAESEKEIDKKNNSSSKVEKPNNVQ----KEKIINYEIDR-- 377 Query: 345 IATTHDNYK---LERLSIAVVVNKGRLTEVLGRSADQGKIDSY-LAEINKIVSAATGINS 400 TH + L+RLS+AVV+NK + +Q + + EI ++ G + Sbjct: 378 -TLTHSKFSTGILKRLSVAVVINKKE-----DQKGNQINFEEKEMQEITSLIKEVMGYSE 431 Query: 401 RRGDTITITSMDFL--ENQLFN-----SGTVQVSFMDILSRHFATVINALVFLVGTLLVT 453 R DT+ + + +F+ ++++FN + +Q F+ ++ + AL++L + Sbjct: 432 ERNDTLDVVNANFVNKKDEIFNIPFWENIRIQNIFISLIKYILSF---ALMWLFINKFIK 488 Query: 454 FLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR 513 +L N D K + SI++ ++ + + +NI++ ++ Sbjct: 489 IWKTSEQNQLKNKIDKKSFQEKNNSIVNEK--NNEINKKINEEENISI---------YTE 537 Query: 514 NLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 N ++ KQ L AKI+ +W + E Sbjct: 538 NSIKKLQEIADKQPKL------------VAKIISQWIKKE 565 >gi|317013789|gb|ADU81225.1| flagellar MS-ring protein [Helicobacter pylori Gambia94/24] Length = 567 Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 121/410 (29%), Positives = 206/410 (50%), Gaps = 30/410 (7%) Query: 23 LILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVSDVNRISVALSEANIDFRISD 78 LI A V++ +++F+ F + Y L+ +L+ SD I L + I +++ Sbjct: 25 LIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFERLDSSDNALILQHLQQNQIPYKVLK 84 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 + +I +P V + RI LA+QG+P +S G+E+FD FG T F Q I +RA+EGE Sbjct: 85 D-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFD-TKDFGATDFDQNIKLIRAIEGE 141 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195 ++RTI+S++ I+ A VHI +P F P+ASVM++ + P + S I++L+ Sbjct: 142 LSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLK-LKPDMKLSPTQILGIKNLI 200 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAF 252 AAAVP L + +V +++ G+ + ++ N + + L Q ++ +E I LA Sbjct: 201 AAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLRYKQNFENILENKIVNILAPI 260 Query: 253 LGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311 +G N A V AE + ++ + +DP++ V L + + + Q V N Sbjct: 261 VGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGASKKQVGGVPGVVSN 320 Query: 312 MPHV---SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGR 367 + V D K P E +K + +NYE+ K+I+ + L RL+ AVVV+ G+ Sbjct: 321 IGPVQGLKDNKEP-----EKYEKSQNTTNYEVG-KTISEIKGEFGTLVRLNAAVVVD-GK 373 Query: 368 LTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 L A+ + D L +IN +V A G N RGD + +++ +F Sbjct: 374 YKIALKDGANALEYEPLSDESLKKINALVKQAIGYNQNRGDDVAVSNFEF 423 >gi|315586339|gb|ADU40720.1| flagellar M-ring protein FliF [Helicobacter pylori 35A] Length = 567 Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 122/410 (29%), Positives = 205/410 (50%), Gaps = 30/410 (7%) Query: 23 LILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVSDVNRISVALSEANIDFRISD 78 LI A V++ +++F+ F + Y L+ +L+ SD I L + I ++I Sbjct: 25 LIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFERLDSSDNALILQHLQQNQIPYKILK 84 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 + +I +P V + RI LA+QG+P +S G+E+FD FG T F Q I +RA+EGE Sbjct: 85 D-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFD-TKDFGATDFDQNIKLIRAIEGE 141 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195 ++RTI+S++ I+ A VHI +P F P+ASVM++ + P + S I++L+ Sbjct: 142 LSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLK-LKPDMKLSPTQILGIKNLI 200 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAF 252 AAAVP L +V +++ G+ + ++ N + + L Q ++ +E I LA Sbjct: 201 AAAVPKLTTENVKIVNENGESIGEGDILENSKELALEQLRYKQNFENILENKIVNILAPI 260 Query: 253 LGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311 +G N A V AE + ++ + +DP++ V L + + + Q V N Sbjct: 261 VGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSN 320 Query: 312 MPHV---SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGR 367 + V D K P E +K + +NYE+ K+I+ + L RL+ AVVV+ G+ Sbjct: 321 IGPVQGLKDNKEP-----EKYEKSQNTTNYEVG-KTISEIKGEFGTLVRLNAAVVVD-GK 373 Query: 368 LTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 L A+ + D L +IN +V A G N RGD + +++ +F Sbjct: 374 YKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDDVAVSNFEF 423 >gi|317008990|gb|ADU79570.1| flagellar MS-ring protein [Helicobacter pylori India7] Length = 567 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 128/431 (29%), Positives = 214/431 (49%), Gaps = 33/431 (7%) Query: 3 ILDQLLQFF-----KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEV 57 +L +++ FF K +L T +LI A +LV ++L+ Y L+ L+ Sbjct: 6 LLQRIVDFFIKLNKKQKIALIATGVLITA--LLVFLLLYPFKEKDYAQGGYGVLFEGLDS 63 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 SD I L + I +++S + +I +P V + RI LA+QG+P +S G+E+FD Sbjct: 64 SDNALILQHLQQNQIPYKVSKD-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFD-T 120 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 FG T F Q I +RA+EGE++RTI+S++ I+ A VHI +P F P+ASVM+ Sbjct: 121 KDFGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180 Query: 178 RAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSL 231 + + P + S I++L+AAAVP L +V +++ G+ + ++ N + + L Sbjct: 181 K-LKPDMKLSPTQILGIKNLIAAAVPKLTTDNVKIVNENGESIGEGDILENSKELALEQL 239 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRL 290 Q ++ +E I LA +G N A V AE + ++ + +DP++ V L Sbjct: 240 HYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNL 299 Query: 291 SKDAQRSETSQPESAVTVEQNMPHV---SDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 + + + Q V N+ V D K P E +K + +NYE+ K+I+ Sbjct: 300 EEKKEGASKKQVGGVPGVVSNIGPVQGLKDNKEP-----EKYEKSQNTTNYEVG-KTISE 353 Query: 348 THDNY-KLERLSIAVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRR 402 + L RL+ AVVV+ G+ L A+ + D L +IN +V A G N R Sbjct: 354 IKGEFGTLVRLNAAVVVD-GKYKIALKDGANTLEYEPLSDESLQKINALVKQAIGYNQNR 412 Query: 403 GDTITITSMDF 413 GD + +++ +F Sbjct: 413 GDDVAVSNFEF 423 >gi|261837785|gb|ACX97551.1| flagellar basal-body M-ring protein [Helicobacter pylori 51] Length = 567 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 122/410 (29%), Positives = 205/410 (50%), Gaps = 30/410 (7%) Query: 23 LILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVSDVNRISVALSEANIDFRISD 78 LI A V++ +++F+ F + Y L+ +L+ SD I L + I ++I Sbjct: 25 LIAAGVLITTLLVFLLLYPFKEKDYAQGGYGVLFERLDSSDNALILQHLQQNQIPYKILK 84 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 + +I +P V + RI LA+QG+P +S G+E+FD FG T F Q I +RA+EGE Sbjct: 85 D-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFD-TKDFGATDFDQNIKLIRAIEGE 141 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195 ++RTI+S++ I+ A VHI +P F P+ASVM++ + P + S I++L+ Sbjct: 142 LSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLK-LKPDMKLSPTQILGIKNLI 200 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAF 252 AAAVP L +V +++ G+ + ++ N + + L Q ++ +E I LA Sbjct: 201 AAAVPKLTTENVKIVNENGESIGEGDILENSKELALEQLRYKQNFENILENKIVNILAPI 260 Query: 253 LGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311 +G N A V AE + ++ + +DP++ V L + + + Q V N Sbjct: 261 VGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSN 320 Query: 312 MPHV---SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGR 367 + V D K P E +K + +NYE+ K+I+ + L RL+ AVVV+ G+ Sbjct: 321 IGPVQGLKDNKEP-----EKYEKSQNTTNYEVG-KTISEIKGEFGTLVRLNAAVVVD-GK 373 Query: 368 LTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 L A+ + D L +IN +V A G N RGD + +++ +F Sbjct: 374 YKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDDVAVSNFEF 423 >gi|217033359|ref|ZP_03438790.1| hypothetical protein HP9810_9g112 [Helicobacter pylori 98-10] gi|216944300|gb|EEC23725.1| hypothetical protein HP9810_9g112 [Helicobacter pylori 98-10] gi|317177162|dbj|BAJ54951.1| flagellar MS-ring protein [Helicobacter pylori F16] gi|317179256|dbj|BAJ57044.1| flagellar MS-ring protein [Helicobacter pylori F30] gi|332673195|gb|AEE70012.1| flagellar M-ring protein FliF [Helicobacter pylori 83] Length = 567 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 122/410 (29%), Positives = 205/410 (50%), Gaps = 30/410 (7%) Query: 23 LILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVSDVNRISVALSEANIDFRISD 78 LI A V++ +++F+ F + Y L+ +L+ SD I L + I ++I Sbjct: 25 LIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFERLDSSDNALILQHLQQNQIPYKILK 84 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 + +I +P V + RI LA+QG+P +S G+E+FD FG T F Q I +RA+EGE Sbjct: 85 D-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFD-TKDFGATDFDQNIKLIRAIEGE 141 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195 ++RTI+S++ I+ A VHI +P F P+ASVM++ + P + S I++L+ Sbjct: 142 LSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLK-LKPDMKLSPTQILGIKNLI 200 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAF 252 AAAVP L +V +++ G+ + ++ N + + L Q ++ +E I LA Sbjct: 201 AAAVPKLTTENVKIVNENGESIGEGDILENSKELALEQLRYKQNFENILENKIVNILAPI 260 Query: 253 LGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311 +G N A V AE + ++ + +DP++ V L + + + Q V N Sbjct: 261 VGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSN 320 Query: 312 MPHV---SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGR 367 + V D K P E +K + +NYE+ K+I+ + L RL+ AVVV+ G+ Sbjct: 321 IGPVQGLKDNKEP-----EKYEKSQNTTNYEVG-KTISEIKGEFGTLVRLNAAVVVD-GK 373 Query: 368 LTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 L A+ + D L +IN +V A G N RGD + +++ +F Sbjct: 374 YKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDDVAVSNFEF 423 >gi|308182520|ref|YP_003926647.1| flagellar MS-ring protein [Helicobacter pylori PeCan4] gi|308064705|gb|ADO06597.1| flagellar MS-ring protein [Helicobacter pylori PeCan4] Length = 567 Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 122/410 (29%), Positives = 205/410 (50%), Gaps = 30/410 (7%) Query: 23 LILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVSDVNRISVALSEANIDFRISD 78 LI A V++ +++F+ F + Y L+ L+ SD I L + I +++S Sbjct: 25 LIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFEGLDSSDNALILQHLQQNQIPYKVSK 84 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 + +I +P V + RI LA+QG+P +S G+E+FD FG T F Q I +RA+EGE Sbjct: 85 D-DTILIPRDKVYEERITLASQGIPKTSK-VGFEIFD-TKDFGATDFDQNIKLIRAIEGE 141 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195 ++RTI+S++ I+ A VHI +P F P+ASVM++ + P + S I++L+ Sbjct: 142 LSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLK-LKPDMKLSPTQILGIKNLI 200 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAF 252 AAAVP L +V +++ G+ + ++ N + + L Q ++ +E I LA Sbjct: 201 AAAVPKLTTENVKIVNENGESIGEGDILENSKELALEQLRYKQNFENILENKIVNILAPI 260 Query: 253 LGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311 +G N A V AE + ++ + +DP++ V L + + + Q V N Sbjct: 261 VGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSN 320 Query: 312 MPHV---SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGR 367 + V D K P E +K + +NYE+ K+I+ + L RL+ AVVV+ G+ Sbjct: 321 IGPVQGLKDNKEP-----EKYEKSQNTTNYEVG-KTISEIKGEFGTLVRLNAAVVVD-GK 373 Query: 368 LTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 L A+ + D L +IN +V A G N RGD + +++ +F Sbjct: 374 YKIALKDGANTLEYEPLSDESLQKINALVKQAIGYNQNRGDDVAVSNFEF 423 >gi|225181611|ref|ZP_03735052.1| flagellar M-ring protein FliF [Dethiobacter alkaliphilus AHT 1] gi|225167719|gb|EEG76529.1| flagellar M-ring protein FliF [Dethiobacter alkaliphilus AHT 1] Length = 519 Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 115/406 (28%), Positives = 199/406 (49%), Gaps = 40/406 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 +++A I+V + A + P L+ LE D RI+ L E N+ + + D G + Sbjct: 31 IVMAVAIIVTLFFLGQA---IARPRMALLFTGLEPVDAGRIAARLQEMNVQYSLDDEGRT 87 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I V MV RI LA+ + SG+ELFD+ N G T F + + +RAL+ E+ RT Sbjct: 88 ILVRQDMVDDVRIQLASDESLNIGGGSGFELFDQTN-LGATDFNRRMDYLRALQEELRRT 146 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIR---HLVAAAV 199 I + + ARVH+ +P+ F + A P+AS+++ A++P +E +R HLVA +V Sbjct: 147 IVRLDEVEQARVHLALPEPSVFIQDSAEPSASIVL-ALSPVSRLDSERVRGIVHLVAGSV 205 Query: 200 PNLDMGDVTVLDSTGKLLT--------ANEMERNILGKSLSIVQAIQHEIEMNINKALAA 251 N+ +VTV+D+TG +L+ ++ + + L I ++ + E+E + L Sbjct: 206 ENMRPENVTVIDTTGNILSDQLDNLDPTKQLAEATMAQ-LDIKRSFEKELERRVQVMLER 264 Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311 LG + + A+L+ D+ + I +D + V RS ++++ P A + N Sbjct: 265 ILGPGQAIAMITADLDFDSHESTVITFDSEG-VPRSQTITEEYFEGAGVVPGEA-GADSN 322 Query: 312 MPHVSDRKVPLPRSLENT--DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK--GR 367 +P P ++ ++ +E +NYEIN + KL +L+ +VVVN G+ Sbjct: 323 IP-----GYPWVGGTGDSTYERYDETTNYEINETTERQIRAPGKLVQLNASVVVNDNGGQ 377 Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 L++ R +I++ V AA G RGD+I++ M F Sbjct: 378 LSQAQVR------------QISEAVEAALGYQVGRGDSISVQGMSF 411 >gi|261821173|ref|YP_003259279.1| flagellar MS-ring protein [Pectobacterium wasabiae WPP163] gi|261605186|gb|ACX87672.1| flagellar M-ring protein FliF [Pectobacterium wasabiae WPP163] Length = 569 Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 119/466 (25%), Positives = 220/466 (47%), Gaps = 59/466 (12%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y LY + D I L++ NI +R ++NG +I +P++ V + R+ LA Sbjct: 46 LWAKGPDYRVLYSNINDRDGGAIVSELTKLNIPYRFAENGGAIMIPAANVYETRLRLAQL 105 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL DK FG++ F ++I RALEGE++RTI+++ + ARVH+ +P Sbjct: 106 GLPKGGA-VGFELLDK-EKFGISQFSEQINYQRALEGELSRTIETLGPVQNARVHLAIPK 163 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + P++SV + RA++ S I ++V+++V L +VTV+D TG+ Sbjct: 164 PSLFVREQKSPSSSVTLTLQPGRALDEGQINS---IVYMVSSSVAGLPPDNVTVVDQTGR 220 Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT A R++ L ++ + I +A +G+ N + V A+++ ++ Sbjct: 221 LLTQAGGSGRDMNAAQLKYSNEVEAMYQRRIESIIAPMVGMGNVHAQVTAQIDFSAREQT 280 Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----------------ES 304 + Y P+ +++ S+ +SE T+QP Sbjct: 281 DEQYQPNQPPDKAAVRSQQTSQSEQKGGPNVGGVPGALTNQPAPAPTAPIATPPNNANNQ 340 Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTD-KKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 A +QN + + ++ ++ + + +NYE++ + T H ++RLS AV+V Sbjct: 341 AGAGQQNQNNAGGTQANANAVIQTSNVRNDATTNYEVDKTILHTKHSTGGVKRLSAAVIV 400 Query: 364 N---KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 N G + + + DQ + +I + A G ++ RGDT+ + + F++N Sbjct: 401 NYQPPGEDGKPVALTEDQ------IKQIETVAREAMGFSTERGDTLNVVNTPFMDN---T 451 Query: 421 SGTVQVSFMDILSRHFATVINA----LVFLVGTLLVTFLGLHALRR 462 G+ ++ F + F ++ A LV +V +L L LR+ Sbjct: 452 EGSSELPFWQKQA-FFDLLMEAGRWLLVLIVAWILWRKLVRPQLRK 496 >gi|218778522|ref|YP_002429840.1| flagellar M-ring protein FliF [Desulfatibacillum alkenivorans AK-01] gi|218759906|gb|ACL02372.1| Flagellar M-ring protein FliF [Desulfatibacillum alkenivorans AK-01] Length = 520 Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 130/426 (30%), Positives = 208/426 (48%), Gaps = 31/426 (7%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +L ++ Q F+S T GR L++ LV F A F+ +P Y L+ +L D + Sbjct: 4 LLQRIAQIFQSMTP-GRRIALVVVLAGLV--AAFAAMFFWAGTPEYQVLFSQLSQEDAGK 60 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L E I ++++ G+++ VP V + R+ LAA+GLP S G+E+FD+ +SF Sbjct: 61 IVSKLQEQRIPYQLAQGGTAVLVPGEQVYELRLSLAAEGLPKGGS-VGFEIFDE-SSFST 118 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T F+Q++ RAL+GE++RTI + + +A+V IV F + + TASV++ + P Sbjct: 119 TEFVQKLNYQRALQGELSRTIGQFNEVRSAKVLIVPAKDTVFVETTSPATASVLLDLVRP 178 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL--TANEMERNILGKS--LSIVQAIQ 238 I +LVA AV L VTV+D+TGK+ A E + L + L + Q + Sbjct: 179 LSSGQVSGIVNLVANAVEGLGTEQVTVVDTTGKVWFKGAGEGDDAALAANNRLEMQQQTE 238 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 + ++ L +G V AE++ D ++ E YDPDS V RS + + E Sbjct: 239 DRLAKHVQSMLEQIVGPGKAIVRVRAEMDFDQEEYSEETYDPDSVVVRSQQKRTEDTVKE 298 Query: 299 TSQPESA-VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 T P A V N P ++ L +S T K++E +N EIN T + RL Sbjct: 299 T--PGGATVNTMNNQPGMAS-GAALGQS--RTQKQDEVTNNEINRVQRRVTKVLPTITRL 353 Query: 358 SIAVVVNKGRLT----------EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 S+A V++ T + + R+A++ L + IV A G + R D +T Sbjct: 354 SVAAVLDGTYKTVENQDGVSTAQFVPRTAEE------LKQFEGIVKNAMGYSEDREDQVT 407 Query: 408 ITSMDF 413 ++S F Sbjct: 408 VSSFQF 413 >gi|33592502|ref|NP_880146.1| flagellar MS-ring protein [Bordetella pertussis Tohama I] gi|33572148|emb|CAE41692.1| flagellar M-ring protein FliF [Bordetella pertussis Tohama I] gi|332381920|gb|AEE66767.1| flagellar MS-ring protein [Bordetella pertussis CS] Length = 558 Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 125/453 (27%), Positives = 202/453 (44%), Gaps = 52/453 (11%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y L+ L+ D I AL + N+ +R SDNGS++ VP+ V R+ LA+Q Sbjct: 45 MWSREPDYKVLFSNLDDRDGGAIVSALDQMNVPYRFSDNGSALLVPAERVYDTRMQLASQ 104 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S G+EL D FG + F ++I R LEGE+AR+I+++ + ARVH+ MP Sbjct: 105 GLPRGGS-VGFELLDNTR-FGASQFAEQINYQRGLEGELARSIEAMHTVQHARVHLAMPR 162 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + PTASV++ A+ A+ LVA++VP L +V+++D G+LL+ Sbjct: 163 QSLFVRDRQAPTASVLLNLYPGRSLSDAQVSAVAWLVASSVPELTAENVSIVDQNGRLLS 222 Query: 219 ANEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 A E R + L V+ ++ I L +G N + AE++ ++ V Sbjct: 223 APLGEGRGMDADQLRFVREMEQRTVERILTILNPLVGPGNVHAQASAEIDFARREETSEV 282 Query: 278 YDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPHVSDRKVPL--PRSL------ 326 Y P+ + ++ S+ S + P +A V N P ++ + P+ P ++ Sbjct: 283 YRPNQEPGQAAVRSQQTSDSRQTGPNAAQGVPGALSNQPP-ANAQAPIVNPPAVAGTPQQ 341 Query: 327 ------------------------ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 + D+ + NYE++ L+RLS+AVV Sbjct: 342 QQQQRAQQQAAGATTTQTQQGAAAPSNDRHDATINYEVDRTISHVKQPVGMLKRLSVAVV 401 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 VN L G S + L ++ +V A G + RGD++ + N FN Sbjct: 402 VNY--LPNKEGES--EALPPEELNKLTNLVREAMGYSEARGDSLNLV------NSQFNDT 451 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455 V V A + AL +L G +L +L Sbjct: 452 PVAVPLWRD-PELIAMIKTALGWLFGLILAFWL 483 >gi|307637039|gb|ADN79489.1| flagellar M-ring protein [Helicobacter pylori 908] Length = 567 Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 121/410 (29%), Positives = 205/410 (50%), Gaps = 30/410 (7%) Query: 23 LILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVSDVNRISVALSEANIDFRISD 78 LI A V++ +++F+ F + Y L+ +L+ SD I L + I +++ Sbjct: 25 LIAAEVLITALLVFLLLYPFKEKDYAQGGYGVLFERLDSSDNALILQHLQQNQIPYKVLK 84 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 + +I VP V + RI LA+QG+P +S G+E+FD FG T F Q I +RA+EGE Sbjct: 85 D-DTILVPKDKVYEERITLASQGIPKTSK-VGFEIFD-TKDFGATDFDQNIKLIRAIEGE 141 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195 ++RTI+S++ I+ A VHI +P F P+ASVM++ + P + S I++L+ Sbjct: 142 LSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLK-LKPDMKLSPTQILGIKNLI 200 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAF 252 AAAVP L + +V +++ G+ + ++ N + + L Q ++ +E I LA Sbjct: 201 AAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLRYKQNFENILENKIVNILAPI 260 Query: 253 LGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311 +G N A V AE + ++ + +DP++ V L + + + Q V N Sbjct: 261 VGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSN 320 Query: 312 MPHV---SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGR 367 + V D K P E +K + +NYE+ K+I+ + L RL+ AVVV+ G+ Sbjct: 321 IGPVQGLKDNKEP-----EKYEKSQNTTNYEVG-KTISEIKGEFGTLVRLNAAVVVD-GK 373 Query: 368 LTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 A+ + D L +IN +V A G N RGD + +++ +F Sbjct: 374 YKIAFKDGANALEYEPLSDESLKKINALVKQAIGYNQNRGDDVAVSNFEF 423 >gi|255985845|ref|YP_354394.3| flagellar MS-ring protein [Rhodobacter sphaeroides 2.4.1] gi|77389308|gb|ABA80493.1| putative flagellar M-ring protein [Rhodobacter sphaeroides 2.4.1] Length = 509 Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 122/426 (28%), Positives = 209/426 (49%), Gaps = 26/426 (6%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 P LY L+ + AL + + G S+ V ++ + R+ LA +G Sbjct: 17 LAGRPPMALLYAGLQGPAAGEVVTALEAQGAAYEV--RGDSVYVEAARRDEIRMKLAGEG 74 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP++ + +GYEL D ++ FG TS M + +RA EGE+ARTI + + AARVHI P Sbjct: 75 LPATGA-AGYELLDGLSGFGTTSQMFDAAYLRAKEGELARTILASPQVKAARVHIAQPAA 133 Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN 220 FR+ RPTASV + +V A A +HLVA+AV L DV+V+DS L+ + Sbjct: 134 QPFRRE-QRPTASVTVTTSGGAVTADQARAFKHLVASAVAGLQPEDVSVIDSVMGLIRSG 192 Query: 221 EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV--- 277 + E++ + + ++ E+ N+ + L A +G V E+++D + RE + Sbjct: 193 D-EKD---GATAAGESRAAELRSNVERLLEARVGPGR----AVVEVSVDVETARESIVEK 244 Query: 278 -YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQS 336 +DP +V I + S +++P VTV N+P + +S +T + E Sbjct: 245 SFDPKGRV--PISSETQEKSSNSTEPSPDVTVASNLPEGDAKGGTGGKS--STSETREMV 300 Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT 396 N+E++ + RL++AV+V+ + G + + + LA + ++V +A Sbjct: 301 NFEVSQTQRELMRQPGAIRRLTVAVLVDGIKTVADDGTVGWEPRPEEELAVLRELVGSAV 360 Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFL-VGTLLVTFL 455 G++ RGD +T+ S+ F +GT ++ LSR A + +L+ + V L+ L Sbjct: 361 GLDESRGDRLTLRSLAF--ETPPEAGT--LAETGFLSRLGAFDLMSLIQIGVLALVALIL 416 Query: 456 GLHALR 461 GL +R Sbjct: 417 GLFVVR 422 >gi|325995631|gb|ADZ51036.1| Flagellar M-ring protein [Helicobacter pylori 2018] gi|325997227|gb|ADZ49435.1| Flagellar MS-ring protein [Helicobacter pylori 2017] Length = 567 Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 121/410 (29%), Positives = 205/410 (50%), Gaps = 30/410 (7%) Query: 23 LILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVSDVNRISVALSEANIDFRISD 78 LI A V++ +++F+ F + Y L+ +L+ SD I L + I +++ Sbjct: 25 LIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFERLDSSDNALILQHLQQNQIPYKVLK 84 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 + +I VP V + RI LA+QG+P +S G+E+FD FG T F Q I +RA+EGE Sbjct: 85 D-DTILVPKDKVYEERITLASQGIPKTSK-VGFEIFD-TKDFGATDFDQNIKLIRAIEGE 141 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195 ++RTI+S++ I+ A VHI +P F P+ASVM++ + P + S I++L+ Sbjct: 142 LSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLK-LKPDMKLSPTQILGIKNLI 200 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAF 252 AAAVP L + +V +++ G+ + ++ N + + L Q ++ +E I LA Sbjct: 201 AAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLRYKQNFENILENKIVNILAPI 260 Query: 253 LGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311 +G N A V AE + ++ + +DP++ V L + + + Q V N Sbjct: 261 VGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSN 320 Query: 312 MPHV---SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGR 367 + V D K P E +K + +NYE+ K+I+ + L RL+ AVVV+ G+ Sbjct: 321 IGPVQGLKDNKEP-----EKYEKSQNTTNYEVG-KTISEIKGEFGTLVRLNAAVVVD-GK 373 Query: 368 LTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 A+ + D L +IN +V A G N RGD + +++ +F Sbjct: 374 YKIAFKDGANALEYEPLSDESLKKINALVKQAIGYNQNRGDDVAVSNFEF 423 >gi|15644979|ref|NP_207149.1| flagellar MS-ring protein [Helicobacter pylori 26695] gi|2313452|gb|AAD07419.1| flagellar basal-body M-ring protein (fliF) [Helicobacter pylori 26695] Length = 567 Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 121/410 (29%), Positives = 205/410 (50%), Gaps = 30/410 (7%) Query: 23 LILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVSDVNRISVALSEANIDFRISD 78 LI A V++ +++F+ F + Y L+ L+ SD I L + I +++S Sbjct: 25 LIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEGLDSSDNALILQHLQQNQIPYKVSK 84 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 + +I +P V + RI LA+QG+P +S G+E+FD FG T F Q I +RA+EGE Sbjct: 85 D-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFD-TKDFGATDFDQNIKLIRAIEGE 141 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195 ++RTI+S++ I+ A VHI +P F P+ASVM++ + P + S I++L+ Sbjct: 142 LSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLK-LKPDMKLSPTQILGIKNLI 200 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAF 252 AAAVP L + +V +++ G+ + ++ N + + L Q ++ +E I LA Sbjct: 201 AAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLHYKQNFENILENKIVNILAPI 260 Query: 253 LGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311 +G N A V AE + ++ + +DP++ V L + + + Q V N Sbjct: 261 VGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGASKKQVGGVPGVVSN 320 Query: 312 MPHV---SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGR 367 + V D K P E +K + +NYE+ K+I+ + L RL+ AVVV+ G+ Sbjct: 321 IGPVQGLKDNKEP-----EKYEKSQNTTNYEVG-KTISEIKGEFGTLVRLNAAVVVD-GK 373 Query: 368 LTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 L + + D L +IN +V A G N RGD + +++ +F Sbjct: 374 YKIALKDGVNTLEYEPLSDESLQKINALVKQAIGYNQNRGDDVAVSNFEF 423 >gi|288942636|ref|YP_003444876.1| flagellar M-ring protein FliF [Allochromatium vinosum DSM 180] gi|288898008|gb|ADC63844.1| flagellar M-ring protein FliF [Allochromatium vinosum DSM 180] Length = 577 Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 105/397 (26%), Positives = 187/397 (47%), Gaps = 22/397 (5%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92 ++ +A F+ P Y L+ +LE ++ + AL++ + +R+ ++ I +P V + Sbjct: 55 LVAVVAILFWALKPTYVPLFSQLEGAEAAEVMEALTQLGVPYRVDNSSGRIEIPQQRVAE 114 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 R+ LA QGLP S++ G+EL + + FG + ++ RALEGE+ R+I ++ + A Sbjct: 115 TRLQLAGQGLP-KSADIGFELLQQESGFGTSRLIEGARFQRALEGELGRSIAALEPVDKA 173 Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVL 210 RVHI + F + P+ASV++ + AI HLV+++VP L VTV+ Sbjct: 174 RVHIARAERSVFVRERVPPSASVVVHLKGSRGLTDTQVGAIVHLVSSSVPELTPDRVTVV 233 Query: 211 DSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM 268 D +G+LLT++ +++ + L ++ + L +G D R V A+L+ Sbjct: 234 DQSGRLLTSDGEDKSSRLSLDHLEYTHRVESRYVDRVQSLLVPIVGRDRVRVQVSADLDF 293 Query: 269 DTQQIREIVYDPDSKVERSIRLSKDAQ-----------RSETSQPESAVTVEQNMPHVSD 317 + + YDPD RS +L+++ + + T+QP + V Q + Sbjct: 294 SRVERTQESYDPDKTAIRSEQLNEEERIGADPLAGGIPGALTNQPPAGGVVGQQQAAQGN 353 Query: 318 RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSAD 377 VP RS + T NYE++ + RL+ AVVV+ G Sbjct: 354 ATVPSSRSQQTT------RNYEVDRTISHIQETPGGVRRLTAAVVVDYVDQVNEAGEPIR 407 Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 + D+ + + +V A G N RGD++ + S F+ Sbjct: 408 VPRSDAEMETLRDLVREAIGFNEARGDSLQVRSASFV 444 >gi|297379568|gb|ADI34455.1| flagellar M-ring protein FliF [Helicobacter pylori v225d] Length = 567 Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 121/410 (29%), Positives = 205/410 (50%), Gaps = 30/410 (7%) Query: 23 LILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVSDVNRISVALSEANIDFRISD 78 LI A V++ +++F+ F + Y L+ +L+ SD I L + I ++I Sbjct: 25 LIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFERLDSSDNALILQHLQQNQIPYKILK 84 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 + +I +P V + RI LA+QG+P +S G+E+FD FG T F Q I +RA+EGE Sbjct: 85 D-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFD-TKDFGATDFDQNIKLIRAIEGE 141 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195 ++RTI++++ I+ A VHI +P F P+ASVM++ + P + S I++L+ Sbjct: 142 LSRTIENLNPILKANVHIAIPKDSVFVAKEVPPSASVMLK-LKPDMKLSPTQILGIKNLI 200 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAF 252 AAAVP L +V +++ G+ + ++ N + + L Q ++ +E I LA Sbjct: 201 AAAVPKLTTENVKIVNENGESIGEGDILENSKELALEQLRYKQNFENILENKIVNILAPI 260 Query: 253 LGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311 +G N A V AE + ++ + +DP++ V L + + + Q V N Sbjct: 261 VGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSN 320 Query: 312 MPHV---SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGR 367 + V D K P E +K + +NYE+ K+I+ + L RL+ AVVV+ G+ Sbjct: 321 IGPVQGLKDNKEP-----EKYEKSQNTTNYEVG-KTISEIKGEFGTLVRLNAAVVVD-GK 373 Query: 368 LTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 L A+ + D L +IN +V A G N RGD + +++ +F Sbjct: 374 YKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDDVAVSNFEF 423 >gi|289523574|ref|ZP_06440428.1| flagellar M-ring protein FliF [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503266|gb|EFD24430.1| flagellar M-ring protein FliF [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 490 Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 119/387 (30%), Positives = 192/387 (49%), Gaps = 45/387 (11%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 Y+ L+ L+V D I L E+NI +R+ + ++I VP +V + R+ L +GLP Sbjct: 22 RYEPLFSNLDVEDQAAIVNYLKESNIPYRVDPSFNAILVPRDVVYETRLSLVGEGLPRGG 81 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + G+ELFDK+ G+T F Q++ +RALEGE+ RTIQSI G+ + +V+IV+P+ F + Sbjct: 82 A-VGFELFDKMK-MGMTDFQQKVGYLRALEGELTRTIQSIRGVQSCKVNIVIPEQKLFLE 139 Query: 167 IGARPTASVMIRAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME 223 TASV++ ++ P E AI HLV+ +V L +V V+DS G +L+ Sbjct: 140 EQFPATASVLL-SLKPGFEMGPEQVKAIVHLVSHSVEGLSPDNVVVVDSKGAILS----- 193 Query: 224 RNILGKSLSI-----VQAIQH--------EIEMNINKALAAFLGVDNFRSAVVAELNMDT 270 ++L +S + V ++Q E+E + L G V LN D Sbjct: 194 -DMLDESYFVLRNETVTSVQREMERQQELELERKARQMLERIFGPGKAVVRVRVFLNFDR 252 Query: 271 QQ--IREIVYDPDSK-VERSIRLSKDAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSL 326 ++ RE V P + V RS + ++ P A N+P +V + P S Sbjct: 253 RRTSTREFVPGPSGRGVPRSDQSLEETYTGPGIPPGGAPGTTTNIPGYVITPQTAGPSSY 312 Query: 327 ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLA 386 E T E +NYEI T+ + +E+++ +V+V+ G+L + + L Sbjct: 313 ERT---ETTTNYEITTREQEVVYTPGGVEKITASVLVD-GQLEQQM------------LN 356 Query: 387 EINKIVSAATGINSRRGDTITITSMDF 413 + + V+AA GIN RGD + + SM F Sbjct: 357 SLRQAVAAAIGINEERGDELYVASMPF 383 >gi|242310458|ref|ZP_04809613.1| flagellar basal-body m-ring protein flif [Helicobacter pullorum MIT 98-5489] gi|239522856|gb|EEQ62722.1| flagellar basal-body m-ring protein flif [Helicobacter pullorum MIT 98-5489] Length = 575 Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 136/483 (28%), Positives = 234/483 (48%), Gaps = 48/483 (9%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNS---------PHYDNLY 52 A+ +Q+ +K + +I+ILA++ V I+ F++A NS P Y L+ Sbjct: 5 ALFEQIRNLYKRLNK--KQKIVILATI--VAIVGFISALIVWNSINNKAGVLYPGYAVLF 60 Query: 53 VKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYE 112 + D I L + I ++I + ++I +P +V + R+ LA+ G+P SS G+E Sbjct: 61 EGVSPEDGALIIQQLQQDKIPYKIPKD-NTILIPQELVYEERMKLASNGIPKSSK-VGFE 118 Query: 113 LFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPT 172 +FD FG T F Q I +RA+EGE+ARTI+S+S I A VHI P+ F PT Sbjct: 119 IFD-TQDFGATDFDQRIKYLRAIEGELARTIESLSPIQKATVHIAQPEKSVFVSEQTPPT 177 Query: 173 ASVMIRAINPS---VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEM--ERNI 226 ASV++ A P+ K I+++V++A+PNL + +V V++ G+ L+ +E+ R + Sbjct: 178 ASVVL-AFKPAQTLTPKQISGIKNIVSSAIPNLTIENVEVVNEKGEPLSELDELGGAREL 236 Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVE 285 L + +E I LA G + + V AE + ++ + YDP++ V Sbjct: 237 AAAQLRYKSNFEQSLEEKIINILAPITGGKEGVVAKVTAEFDFAQKESTQEYYDPNNVVR 296 Query: 286 RSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEE------QSNYE 339 L + E ++P+ V P V P+ + LEN D KE+ +NYE Sbjct: 297 SEQNLE---ESREGAKPKEIGGV----PGVVSNIGPV-QGLENEDAKEKYEKSQTTTNYE 348 Query: 340 INTKSIATTHDNY-KLERLSIAVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSA 394 + +K+I+ + + RLS AVVV+ ++ +Q + + +I +V Sbjct: 349 V-SKTISNIKGEFATIRRLSAAVVVDGKYQKQLDNNGVEQLEYIALNQQEMEQITALVRQ 407 Query: 395 ATGINSRRGDTITITSMDFLENQL--FNSGTVQVSFMDILSRHFATVINALVF-LVGTLL 451 A G N +RGD +++++ L Q+ F + T F++ + L + +VG +L Sbjct: 408 AIGYNQQRGDEVSVSNFQ-LNGQISGFKARTPLERFLETSQELLTPFMPLLKYVVVGIIL 466 Query: 452 VTF 454 F Sbjct: 467 FLF 469 >gi|146307847|ref|YP_001188312.1| flagellar MS-ring protein [Pseudomonas mendocina ymp] gi|145576048|gb|ABP85580.1| flagellar M-ring protein FliF [Pseudomonas mendocina ymp] Length = 594 Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 132/519 (25%), Positives = 231/519 (44%), Gaps = 56/519 (10%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + R L L + + + A + P Y LY L D ++ L Sbjct: 25 LSFLENLAEMSVLRQLGLLVGLAASVAIGFAVVLWSQQPDYRPLYGSLNGLDATQVVETL 84 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + A I++ + N ++ V + + +AR+ LAA G+ + ++ G+E+ D+ G + FM+ Sbjct: 85 NAAGINYTVEPNSGALLVKADDLSRARLRLAAAGVAPTDNSVGFEILDREQGLGTSQFME 144 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINP 182 R LEGE+ART+ S++ + AARVH+ MP F + +P+ASV++ RA+ P Sbjct: 145 ATRYRRGLEGELARTVSSLNNVKAARVHLAMPKASVFVRDERKPSASVLVELYPGRALEP 204 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHE 240 S AI +LVA +VP LD G VTV+D G LL+ + E + GK + ++ Sbjct: 205 S---QVMAIVNLVATSVPELDKGQVTVVDQKGNLLSDQQELSELTMAGKQFDYTRRMETL 261 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 ++ L LG +++ V A+++ + + +++PD RS + + ++S S Sbjct: 262 FTQRVHNILQPVLGTGRYKAEVSADVDFSSVESTSEMFNPDQPALRSEQQVNEQRQS--S 319 Query: 301 QPESAVT---------------------------------VEQNMPHVSDRKVPLPRSLE 327 P V V+ N ++D P Sbjct: 320 LPPQGVPGALSNQPPGAAAAPEQAGGAAGAAGPVAPGQPLVDANGQQITDPITGQPMLAP 379 Query: 328 NTDKKEEQS--NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS-Y 384 K EQS N+E++ T +L RLS+AVVV+ + A++ + Sbjct: 380 YPADKREQSTRNFELDRSISYTKQQQGRLRRLSVAVVVDDQVRVDPATGEANRVPWSADD 439 Query: 385 LAEINKIVSAATGINSRRGDTITITSMDF---LENQLFN-SGTVQVSFMDILSRHFATVI 440 LA ++V + G ++ RGD++++ + F L ++ + Q F DI+ + V+ Sbjct: 440 LARFTRLVQDSVGFDASRGDSVSVINTAFTASLGEEIPDIPFYTQPWFWDIV-KQVLGVL 498 Query: 441 NALVFLVGTL---LVTFLGLHALRRLHNIDDAKKGEVGG 476 LV + G L L G + L D + GE+ G Sbjct: 499 FILVLVFGVLRPVLNNITGGGKGKGLAETGDVELGEMAG 537 >gi|187478210|ref|YP_786234.1| flagellar MS-ring protein [Bordetella avium 197N] gi|115422796|emb|CAJ49324.1| flagellar M-ring protein [Bordetella avium 197N] Length = 544 Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 121/453 (26%), Positives = 204/453 (45%), Gaps = 50/453 (11%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + P Y L+ L+ D I AL++ N+ +R SDNG +I VP + V R+ LA QG Sbjct: 46 WSREPDYKVLFSNLDDRDGGAIVTALTQMNVPYRFSDNGGAILVPGNRVYDLRMQLAGQG 105 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG + F +++ RALEGE+AR+I+++ + ARVH+ +P Sbjct: 106 LPRGGS-VGFELMDNAR-FGASQFAEQVNYQRALEGELARSIEAMHTVQHARVHLALPRQ 163 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + PT SV++ A+ AI LVA++VP+L +V+++D G+LL+A Sbjct: 164 SLFVRDRQPPTGSVLLTLYPGRSLAEAQVSAIAWLVASSVPDLSADNVSIVDQNGRLLSA 223 Query: 220 NEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 E R + + + + I L +G N + E++ ++ +Y Sbjct: 224 PAGEGRGLDADQMRFAREYEQRTVERILTILNPLVGPGNVHAQASVEVDFARREETSEIY 283 Query: 279 DPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPHVSDRKVPLPR----------- 324 P+ + ++ S+ S + A V N P + + PL Sbjct: 284 RPNQEPGQAAVRSQQTSDSRQTNASPAAGVPGALSNQPPAAT-QAPLTNPPAPAQPQAQP 342 Query: 325 -------SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSAD 377 + ++++ NYE++ +++RLS+AVVVN + + D Sbjct: 343 AAPQQAAQISGNERRDATINYEVDRTISHVKQPVGQVKRLSVAVVVN-----HLPNKDGD 397 Query: 378 -QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFM---DILS 433 Q L+++ +V A G + RGD++ + N FN V D++ Sbjct: 398 PQALPPEELSKLTTLVREAMGYSEARGDSLNLV------NSQFNDAPPTVPLWRDPDLI- 450 Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 AT+ AL ++ G LL+ F A RR+ I Sbjct: 451 ---ATIKTALGWVFG-LLIAFW---AYRRIRPI 476 >gi|330808215|ref|YP_004352677.1| flagellar MS-ring protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376323|gb|AEA67673.1| flagellar MS-ring protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 594 Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 137/570 (24%), Positives = 247/570 (43%), Gaps = 83/570 (14%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92 + + A + P Y LY L D ++ L+ A+I + + N ++ V + V + Sbjct: 50 VAIGFAVVLWSQQPDYRPLYGSLAGMDAKQVMETLASADIPYTVEPNSGALLVKADDVAR 109 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 AR+ LAA G+ + N G+E+ DK G + FM+ R LEGE+ARTI S++ + A Sbjct: 110 ARLKLAAAGVTPTDGNIGFEILDKDQGLGTSQFMEATRYRRGLEGELARTISSLNNVKGA 169 Query: 153 RVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDV 207 RVH+ +P F + +P+ASV++ R++ P AI +LVA +VP L + Sbjct: 170 RVHLAIPKSSVFVRDERKPSASVLVELYSGRSLEPG---QVLAIINLVATSVPELSKSQI 226 Query: 208 TVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE 265 TV+D G LL+ A E + GK + ++ + ++ L LG D +++ V A+ Sbjct: 227 TVVDQKGNLLSDQAENSELTMAGKQFDYSRRMEGMLTQRVHNILQPILGNDRYKAEVSAD 286 Query: 266 LNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP------------ 313 ++ + ++PD RS + S + QR+ ++ P+ N P Sbjct: 287 VDFSAVESTSEQFNPDQPALRSEQ-SVNEQRTASNGPQGVPGALSNQPPSPASAPQTTGG 345 Query: 314 --------------------HVSDRKVPLPRSLENTDKKEEQS--NYEINTKSIATTHDN 351 + D P K +QS N+E++ T Sbjct: 346 ATAAAGMVQPGQPLIDANGQQIMDPATGQPMLAPYPADKRQQSTKNFELDRSISHTKQQQ 405 Query: 352 YKLERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 +L RLS+AVVV ++ ++ G ++ LA ++V A G ++ RGD++++ + Sbjct: 406 GRLTRLSVAVVVDDQVKVNAANGETSRAPWSADELARFTRLVQDAVGFDASRGDSVSVIN 465 Query: 411 MDF-------LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL---LVTFLGLHAL 460 + F + + F S Q F D++ + V+ LV + G L L G Sbjct: 466 VPFSLERGEVVADIPFYS---QPWFWDVV-KQVLGVLFILVLVFGVLRPVLNNITGGGKS 521 Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF-SHSRNLQSRI 519 ++L D + G +GG G + ND ++L + S S +++ Sbjct: 522 KQLAGFGDVELGGMGG-------------LDGELANDRVSLGGPQSILLPSPSEGYDAQL 568 Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKW 549 N+ S ++ + R A+++++W Sbjct: 569 NAIKS---------LVAEDPGRVAQVVKEW 589 >gi|33601565|ref|NP_889125.1| flagellar MS-ring protein [Bordetella bronchiseptica RB50] gi|33576001|emb|CAE33081.1| flagellar M-ring protein [Bordetella bronchiseptica RB50] Length = 558 Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 124/453 (27%), Positives = 202/453 (44%), Gaps = 52/453 (11%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y L+ L+ D I AL + N+ +R SDNGS++ VP+ V R+ LA+Q Sbjct: 45 MWSREPDYKVLFSNLDDRDGGAIVSALGQMNVPYRFSDNGSALLVPAERVYDTRMQLASQ 104 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S G+EL D FG + F ++I R LEGE+AR+I+++ + ARVH+ MP Sbjct: 105 GLPRGGS-VGFELLDNTR-FGASQFAEQINYQRGLEGELARSIEAMHTVQHARVHLAMPR 162 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + PTASV++ A+ A+ LVA++VP L +V+++D G+LL+ Sbjct: 163 QSLFVRDRQAPTASVLLNLYPGRSLSDAQVSAVAWLVASSVPELTAENVSIVDQNGRLLS 222 Query: 219 ANEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 A E R + L V+ ++ I L +G N + AE++ ++ V Sbjct: 223 APLGEGRGMDADQLRFVREMEQRTVERILTILNPLVGPGNVHAQASAEIDFARREETSEV 282 Query: 278 YDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPHVSDRKVPL--PRSL------ 326 Y P+ + ++ S+ S + P +A V N P ++ + P+ P ++ Sbjct: 283 YRPNQEPGQAAVRSQQTSDSRQTGPNAAQGVPGALSNQPP-ANAQAPIVNPPAVAGTPQQ 341 Query: 327 ------------------------ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 + D+ + NYE++ L+RLS+AVV Sbjct: 342 QQQQRAQQQAAGATTTQTQPGAAAPSNDRHDATINYEVDRTISHVKQPVGMLKRLSVAVV 401 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 VN L G S + L ++ +V A G + RGD++ + N FN Sbjct: 402 VNY--LPNKEGES--EALPPEELNKLTNLVREAMGYSEARGDSLNLV------NSQFNDT 451 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455 V V A + AL ++ G +L +L Sbjct: 452 PVAVPLWRD-PELIAMIKTALGWMFGLILAFWL 483 >gi|323225205|gb|EGA09449.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] Length = 366 Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 89/282 (31%), Positives = 148/282 (52%), Gaps = 13/282 (4%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V I++ M + +P Y L+ L D I L++ NI +R ++ + Sbjct: 28 LIVAGSATVAIVVAMV--LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGA 85 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE+ART Sbjct: 86 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELART 143 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAA 197 I+++ + +ARVH+ MP F + P+ASV + RA++ A+ HLV++ Sbjct: 144 IETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALD---EGQISAVVHLVSS 200 Query: 198 AVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVD 256 AV L G+VT++D +G LLT +N R++ L ++ I+ I L+ +G Sbjct: 201 AVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNG 260 Query: 257 NFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 N + V A+L+ ++ E Y P+ ++ S+ SE Sbjct: 261 NVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISE 302 >gi|77457763|ref|YP_347268.1| flagellar MS-ring protein [Pseudomonas fluorescens Pf0-1] gi|77381766|gb|ABA73279.1| flagellar M-ring protein [Pseudomonas fluorescens Pf0-1] Length = 595 Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 138/578 (23%), Positives = 247/578 (42%), Gaps = 98/578 (16%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92 + + A + P Y LY L D ++ L+ A+I + + N ++ V + + + Sbjct: 50 VAIGFAVVLWSQQPDYRPLYGSLAGMDAKQVMDTLASADIPYTVEPNSGALLVKADDLSR 109 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 AR+ LAA G+ S N G+E+ DK G + FM+ R LEGE+ARTI S++ + A Sbjct: 110 ARLKLAAAGVTPSDGNIGFEILDKEQGLGTSQFMEATRYRRGLEGELARTISSLNNVKGA 169 Query: 153 RVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDV 207 RVH+ +P F + +P+ASV++ R++ P AI +LVA +VP L + Sbjct: 170 RVHLAIPKSSVFVRDERKPSASVLVELYSGRSLEPG---QVVAIINLVATSVPELSKSQI 226 Query: 208 TVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE 265 TV+D G LL+ A E + GK + ++ + ++ L LG D +++ V A+ Sbjct: 227 TVVDQKGNLLSDQAENAEMTMAGKQFDYSRRMESMLTQRVHNILQPVLGNDRYKAEVSAD 286 Query: 266 LNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRS 325 ++ + ++PD RS + S + QR+ ++ P Q +P + P P S Sbjct: 287 VDFSAVESTAEQFNPDQPALRSEQ-SVNEQRTASNGP-------QGVPGALSNQPPSPAS 338 Query: 326 LENT----------------------------------------DKKEEQS-NYEINTKS 344 T DK+++ + N+E++ Sbjct: 339 APQTTGGAAAPASMVQPGQPLVDANGQQIMDPATGQPMLAPYPADKRQQSTKNFELDRSI 398 Query: 345 IATTHDNYKLERLS-IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403 T +L RLS VV ++ ++ G + LA ++V A G ++ RG Sbjct: 399 SHTKQQQGRLNRLSVSVVVDDQVKINPANGETTRAPWSADELARFTRLVQDAVGFDASRG 458 Query: 404 DTITITSMDF-------LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL---LVT 453 D++++ +M F + + F S Q F DI+ + V+ LV + G L L Sbjct: 459 DSVSVINMPFSAERGEVIADIPFYS---QPWFWDIV-KQVLGVLFILVLVFGVLRPVLNN 514 Query: 454 FLGLHALRRLHNI-DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF-SH 511 G + L + D + G +GG G + ND ++L + S Sbjct: 515 ITGGGKSKELAGLGGDMELGGMGG-------------LDGELSNDRVSLGGPTSILLPSP 561 Query: 512 SRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549 S +++N+ S ++ + R A+++++W Sbjct: 562 SEGYDAQLNAIKS---------LVAEDPGRVAQVVKEW 590 >gi|117624078|ref|YP_852991.1| flagellar M-ring protein [Escherichia coli APEC O1] gi|115513202|gb|ABJ01277.1| Flagellar M-ring protein [Escherichia coli APEC O1] Length = 333 Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 89/281 (31%), Positives = 145/281 (51%), Gaps = 7/281 (2%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +M+ + + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I++I + ARVH+ MP F + P+ASV + + + AI HLV++AV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200 Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 L G+VT++D G LLT +N R++ L ++ I+ I L+ +G N Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 + V A+L+ +++ E Y P+ + S+ SE S Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQS 301 >gi|152997451|ref|YP_001342286.1| flagellar MS-ring protein [Marinomonas sp. MWYL1] gi|150838375|gb|ABR72351.1| flagellar M-ring protein FliF [Marinomonas sp. MWYL1] Length = 558 Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 116/419 (27%), Positives = 204/419 (48%), Gaps = 38/419 (9%) Query: 21 RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80 R L L + I + +AA + N P Y + + + ++I LS NI F++ N Sbjct: 28 RQLALMVGLAASIAIGLAAVLWSNGPDYKPVLSSITDYNADQIVEILSVNNIPFKLDQNT 87 Query: 81 SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140 ++ V S +AR+ LA G+ S + G E+ D+ G + F++ R LEGE++ Sbjct: 88 GALLVESDFYHQARLKLAGSGI-VSDNIVGMEIMDQEQGLGTSQFVETTRYRRGLEGELS 146 Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLV 195 RTI S+ I +ARVH+ +P F + +P+ASV + R ++ S EAI +LV Sbjct: 147 RTIASLQSIKSARVHLAIPKESVFVRDTRKPSASVFLELYPGRRLDKS---QVEAIVNLV 203 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMNINKALAAFL 253 A+++ L DVTV+D G LLT ++ E ++ GK + ++ + +N L + Sbjct: 204 ASSISQLSDKDVTVVDQRGTLLTEKDSDSELSVAGKQFDYARKVEEVLLQRVNNILGPVI 263 Query: 254 GVDNFRSAVVAELNMDTQQIREIVYDPD---SKVERSIRLSKDAQRSE-------TSQPE 303 G F++ V A+++ + Y+PD + E+++R ++ A S T+QP Sbjct: 264 GQGRFKAEVSADVDFTAVEKTNEQYNPDLLALRSEQTLRENRSAGTSASGIPGALTNQPP 323 Query: 304 SAVTVEQNMPHVSDRKVPLP--RSLENTDKKEEQS-NYEINTKSIATTHDNYKLERLSIA 360 AVT+ + V + P+ S +N +EE + N+E++ T + RLS+A Sbjct: 324 GAVTIPE---AVDENGAPIGGNTSAKNGQSREETTRNFELDRSISYTKRQQGMVRRLSVA 380 Query: 361 VVVNKGRLTEVLGRSADQGKI------DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 VVV+ +++ + D I D L + +V A G + RGD++++ + F Sbjct: 381 VVVD-----DLMSLNPDTSAIVRTPWNDDELGRLTLLVRDAVGYDPSRGDSVSVINSPF 434 >gi|304312787|ref|YP_003812385.1| Flagellar basal-body M-ring protein [gamma proteobacterium HdN1] gi|301798520|emb|CBL46750.1| Flagellar basal-body M-ring protein [gamma proteobacterium HdN1] Length = 575 Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 113/442 (25%), Positives = 207/442 (46%), Gaps = 30/442 (6%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P + L+ + + + ++++ L+ I F++ + V + + AR+ LA + Sbjct: 56 LWSTEPEFRPLFTDVSMIEASQVADVLAREKIQFKVDPASGLVMVRAEKINDARMALAKE 115 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + N GYEL DK FG + FM++ R++EGE+A+TI S++ + ARVH+ +P Sbjct: 116 GLPGGN-NMGYELLDKEQGFGTSQFMEKTRYFRSIEGELAKTISSLTPVRNARVHLAIPK 174 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE-----AIRHLVAAAVPNLDMGDVTVLDSTGK 215 F +PTASV + + PS +S E AI HLVA++VP + DVTV+D G+ Sbjct: 175 RSVFINDKRKPTASVFVE-LYPS--RSLERDQVAAIVHLVASSVPEMSSKDVTVVDQRGR 231 Query: 216 LLTAN--EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI 273 LL+ + E I + L I+ + I L LG + F+ + A+++ + + Sbjct: 232 LLSEDTSNGEMTIAARQLDYQHNIEEKYLGRIRDLLEPLLGPERFKVQLTADIDFNVVEQ 291 Query: 274 REIVYDPDSKVERSIR-LSKDAQRSE--------TSQPESAVTVEQNMPHVSDRKVPLPR 324 Y+PD RS + LS+ + + ++QP A +V + ++ Sbjct: 292 TAESYNPDLPALRSEQTLSEKSSAAGPMGVPGALSNQPPGAASVPEQATGSNNAGNNASS 351 Query: 325 SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY 384 + +++ NYE++ T ++RLS+AVV++ + Sbjct: 352 TDAGNQRQQATRNYELDRTISHTRRQVGGIKRLSVAVVLDDKWQNPAADAAPGTQPTRVA 411 Query: 385 LAE-----INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRH 435 L+E I ++ A G ++ RGD++++ + F Q + + Q F D++ R Sbjct: 412 LSEAELERITLLIKDAVGYDAARGDSVSVINQPFSPVQFDSIPDLPIWQQAWFQDVI-RQ 470 Query: 436 FATVINALVFLVGTLLVTFLGL 457 A + ++ + G L GL Sbjct: 471 VAGWLVVIILIFGVLRPILKGL 492 >gi|296135691|ref|YP_003642933.1| flagellar M-ring protein FliF [Thiomonas intermedia K12] gi|295795813|gb|ADG30603.1| flagellar M-ring protein FliF [Thiomonas intermedia K12] Length = 568 Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 111/392 (28%), Positives = 186/392 (47%), Gaps = 30/392 (7%) Query: 48 YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 Y LY L D + L + NI +RI+ G+ I VPS+ V R+ LAA GLP + Sbjct: 50 YQVLYTNLSERDGGAVIGELQKLNIPYRITGGGAVIEVPSAQVYATRMKLAANGLPKGA- 108 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 G+E+ D G + F++ + RALEG + RTI+S+S + +A VH+ +P F Sbjct: 109 GVGFEVLDH-EPMGTSQFVERVNYQRALEGSLGRTIESLSAVQSATVHLAIPKPSVFLSE 167 Query: 168 GARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MER 224 +P+ASV+++ V A+ I HLV++AV L +V+V+D G LLT+ + + Sbjct: 168 AEKPSASVLLKLYPGRVLSGAQVAGIVHLVSSAVAGLGDKNVSVVDQDGNLLTSGQRADS 227 Query: 225 NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV 284 I L I+ + I LA +G + R AV A+++ + +VY + Sbjct: 228 GIQPDQLMYRNTIEQQYRKQIEALLAPLVGNEGVRVAVSADIDFAKTESSSVVYGQGHLL 287 Query: 285 ERSIR---------LSKDAQRSETSQPESAVTVEQNM--------PHVSDRKVPLPRSLE 327 + + L + ++QP VT M P + P ++L Sbjct: 288 SQQQQSTNSSGGGTLPAGVPGALSNQPPGGVTAPFVMGTASAPLTPQQLTQITPSLKTLA 347 Query: 328 NTDKKEEQ-SNYEINTKSIATTHDNYKLERLSIAVVVN-KGRLTEVLGRSADQGKIDSYL 385 T SNY+++ T ++RLS++V+VN + + + + SA Q L Sbjct: 348 PTAASSSATSNYDLDKTVSHTQQPVGSVKRLSVSVLVNDQAKGGKPVPLSAAQ------L 401 Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQ 417 ++ ++V A G +++RGDT++I +M F Q Sbjct: 402 GQMKQLVENAIGFDAKRGDTVSIVNMPFTAAQ 433 >gi|51597648|ref|YP_071839.1| flagellar MS-ring protein [Yersinia pseudotuberculosis IP 32953] gi|51590930|emb|CAH22586.1| putative flagellar M-ring protein [Yersinia pseudotuberculosis IP 32953] Length = 546 Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 119/426 (27%), Positives = 215/426 (50%), Gaps = 38/426 (8%) Query: 3 ILDQLLQFFKSGTSLGRTRILIL-ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 +LD++ Q F G T+I+++ A+ +LV + + + +S Y L+ E + Sbjct: 1 MLDKIKQKFSPGQLGENTKIILMSAAALLVTAAIIFS--LWRSSQGYTALFGSQENIPIT 58 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 ++ L I +RI+ + + V + +GKARI LAA+G+ +++ GYEL DK + G Sbjct: 59 QVVEVLEGEAIAYRINPDNGQVLVAENQLGKARILLAAKGI-TATLPIGYELMDKESMLG 117 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRAI 180 + F+Q + R+LEGE+A+++ ++S + ARVH+ M + SF A +ASV++R Sbjct: 118 SSQFIQNVRYKRSLEGELAQSMMALSAVEYARVHLGMSEASSFAISNHADNSASVVLRLR 177 Query: 181 NPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIV 234 + + AI LVA ++P + +V V+D G+LL+ AN + + Sbjct: 178 YGQTLSTEQVGAIVQLVAGSIPGMKPANVRVVDQHGELLSQAYQANSEGVPSVKSGTELA 237 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV--YDPDSKVERSIRLSK 292 +Q E NI L + +G +N+R +V +L+M +I E Y PD R++ Sbjct: 238 HYLQSTTEKNIANLLNSVIGANNYRISVSTQLDMS--RIEETAEHYGPDP------RIND 289 Query: 293 DAQRSETSQPESAVTV-----EQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 + + E S + A+ + Q +P + P S +K Y+ N + + Sbjct: 290 ENIQQENSNDDMAMGIPGSLSNQPIPQSQAGQTPAAVSRSQAQRK---YIYDRNIRHV-- 344 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 + YKLE++++AVV+NK L + + +Q + E+ +++ A GI+ +RGD++T Sbjct: 345 RYPGYKLEKMTVAVVLNKS-LPVLEQWTPEQQE------ELKRLIEDAAGIDVKRGDSLT 397 Query: 408 ITSMDF 413 I M F Sbjct: 398 INMMAF 403 >gi|169831911|ref|YP_001717893.1| flagellar MS-ring protein [Candidatus Desulforudis audaxviator MP104C] gi|169638755|gb|ACA60261.1| flagellar M-ring protein FliF [Candidatus Desulforudis audaxviator MP104C] Length = 518 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 114/404 (28%), Positives = 194/404 (48%), Gaps = 39/404 (9%) Query: 22 ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81 +L++ S++ ++ ++A FV +Y L+ LE + I L I + +SD G+ Sbjct: 27 LLVIGSLL---VLYYLAQ--FVRQMNYTTLFAGLEPREAGAIVEQLDGMRIPYMLSDGGT 81 Query: 82 SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 +I VP + V +ARI LA G + +G+ELFD+ G+T F Q++ RAL+ E+ R Sbjct: 82 TIQVPRAQVDQARIQLATSGA-LGADGAGWELFDR-TKLGVTEFEQQVNYQRALQEELRR 139 Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRH---LVAAA 198 TI + + AARVH+V+P+ F A PTASV ++ + P + +R LVA + Sbjct: 140 TIVQLDEVEAARVHLVLPEKSIFATEKAPPTASVAVK-LRPGTDLNQSQVRGVVALVAGS 198 Query: 199 VPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS---IVQAIQHEIEMNINKALAAFLGV 255 V L +V ++D G+LL + + + G +L+ I + + E+EM + L +G Sbjct: 199 VEGLTPENVHLVDMRGRLLHPDGHQDPVSGLALTHQEIKRNYERELEMRLQNMLQRIVGP 258 Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKV--ERSIRLSKDAQRSETSQPESAVTVEQNMP 313 D V A+L+ QQ V +++V E+++R + + P + + P Sbjct: 259 DRVVVMVSADLDFSQQQSVSTVPYGEAQVVSEQTVREESEGSGTGGGVPGTDANLPATYP 318 Query: 314 ---HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTE 370 +D P + ++E +NY++ T ++ RLS +VVV+ Sbjct: 319 LAGRPADAGAPT-----SFVREERTANYQVGTLQQTVIQPPGEVRRLSTSVVVD------ 367 Query: 371 VLGRSADQGKIDSYLAE-INKIVSAATGINSRRGDTITITSMDF 413 G + + AE I +V+AA G N RGD I + M F Sbjct: 368 --------GDLSAARAEQIQGVVTAALGYNPERGDQILVAPMAF 403 >gi|224825756|ref|ZP_03698860.1| flagellar M-ring protein FliF [Lutiella nitroferrum 2002] gi|224601980|gb|EEG08159.1| flagellar M-ring protein FliF [Lutiella nitroferrum 2002] Length = 543 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 116/451 (25%), Positives = 210/451 (46%), Gaps = 30/451 (6%) Query: 25 LASVILVPIMLFMAARFFV--NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 L ++++ I L +A F++ + Y ++ E + L I +R+ Sbjct: 9 LLPLLVLAIGLTLAVTFWLWRDDARYKPVFGAQEKVVAADMMAVLDAEKIPYRLHPQTGQ 68 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 + VP + +G+ R+ LAA+G+ + +G EL DK + G++ F+Q++ R LEGE+ ++ Sbjct: 69 VLVPDADLGRVRMALAAKGV-VAQLPAGLELLDKNDPLGVSQFVQDVRFRRGLEGELTQS 127 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLVAAAV 199 I ++ + ARVH+ +P SF G ++ ++ + P S E A+ +LVA +V Sbjct: 128 ILALEPVQGARVHLSLPRSSSFVTAGEDKGSASVVVTLKPGRQLSNEQIAAVVNLVAGSV 187 Query: 200 PNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQ---HEIEMNINKALAAFLGVD 256 L+ VT++D G LL+ + +E G+ + A + E N+ L +G D Sbjct: 188 STLNPAKVTLVDQAGNLLS-SRIELAEGGQPAAESDAAKRYREEALENVRALLTPVIGAD 246 Query: 257 NFRSAVVAELNMD-TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNM 312 NF+ ++ AE++ D ++ RE K + +++ +A R E S + A+ + N Sbjct: 247 NFKVSITAEVDNDRVEETRE-------KYGEAPKITNEASREEKSNDKLALGIPGSLSNR 299 Query: 313 PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372 P +D P S+ K Y + + H +L RLS+AVV+N+ Sbjct: 300 PINTDSSAPAQESVGGNSKNAVTRQYAYDRSIMQIKHARGRLSRLSVAVVLNQAAAPAKG 359 Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDIL 432 G A+Q LA ++K++ GI + RGD + +T+M+F Q D L Sbjct: 360 GWQAEQ------LANVDKVLRNGLGIKAERGDALAVTAMNFPGQVALEPWWQQ---RDTL 410 Query: 433 SRHFATVINALVFLVGTLLVTFLGLHALRRL 463 + + + L+G LL+ L LR+ Sbjct: 411 LDGASWLAYGVALLLGYLLIARPLLKILRQW 441 >gi|89056671|ref|YP_512122.1| flagellar MS-ring protein [Jannaschia sp. CCS1] gi|88866220|gb|ABD57097.1| flagellar M-ring protein FliF [Jannaschia sp. CCS1] Length = 583 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 117/412 (28%), Positives = 200/412 (48%), Gaps = 15/412 (3%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +L+ LL+ + GR R L++ + + ++L + R + P + LY L+ + Sbjct: 16 VLNALLEIWNGMN--GRRRGLLIGGIAALAVVLVILTRI-ASQPSFQLLYSGLDPAAAGE 72 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + AL+ + RI +G I V ++ + R+ LA +GLP++ GYEL D ++ FG Sbjct: 73 VVDALAARGVAHRI--DGDQIFVDATQRDELRMALAGEGLPANGPQ-GYELLDSLSGFGT 129 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 TS M + RA EGE++RTI + I AARVHI P F+ TASV IR + Sbjct: 130 TSQMFDAAYWRAKEGELSRTILASPAIRAARVHIANPSSDPFQPTN-EVTASVAIRPASG 188 Query: 183 SVYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEI 241 + A A+R+LVA++VP L +VTV+D+ + + + + +Q Sbjct: 189 GLAPGHAHALRYLVASSVPGLRPENVTVIDADSGQVLGGQGQMTPAADAAGRATTLQQ-- 246 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 N+ + LAA +G N V EL + I E V DP+S+V + +++ + T Sbjct: 247 --NVERLLAARVGPSNAVVQVSVELETARETILERVIDPESRVIIATD-TEEMDNASTDG 303 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 + VTV N+P D S + T+ + E+ ++++ + + R+++AV Sbjct: 304 AAAGVTVASNLPD-GDGAAGEGSSAQTTESR-ERVTFDMSELQREVEREPGDIRRITVAV 361 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 +VN G + + + L + ++V +A G + RGD +TI SM F Sbjct: 362 LVNGVEEINASGVAETIPRPAAELDALTELVRSAVGYDEARGDIVTIQSMAF 413 >gi|294339862|emb|CAZ88225.1| putative Flagellar M-ring protein FliF [Thiomonas sp. 3As] Length = 568 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 111/395 (28%), Positives = 183/395 (46%), Gaps = 36/395 (9%) Query: 48 YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 Y LY L D + L + NI +RI+ G+ I VPS+ V R+ LAA GLP + Sbjct: 50 YQVLYTNLSERDGGAVIGELQKLNIPYRITGGGAVIEVPSAQVYATRMKLAANGLPKGA- 108 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 G+E+ D G + F++ + RALEG + RTI+S+S + +A VH+ +P F Sbjct: 109 GVGFEVLDH-EPMGTSQFVERVNYQRALEGSLGRTIESLSAVQSATVHLAIPKPSVFLSE 167 Query: 168 GARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MER 224 +P+ASV+++ V A+ I HLV++AV L +V+V+D G LLT+ + + Sbjct: 168 AEKPSASVLLKLYPGRVLSGAQVAGIVHLVSSAVAGLGDKNVSVVDQDGNLLTSGQRADS 227 Query: 225 NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV 284 I L I+ + I LA +G + R AV A+++ + +VY + Sbjct: 228 GIQPDQLMYRNTIEQQYRKQIEALLAPLVGNEGVRVAVSADIDFAKTESSSVVYGQGHLL 287 Query: 285 ERSIR---------LSKDAQRSETSQPESAVTVEQNM--------PHVSDRKVPLPRSLE 327 + + L + ++QP VT M P + P ++L Sbjct: 288 SQQQQSTNSSGGGTLPAGVPGALSNQPPGGVTAPFVMGTASAPLTPQQLTQITPSLKTLA 347 Query: 328 NTDKKEEQ-SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI----D 382 T SNY+++ T ++RLS++V+VN A GK Sbjct: 348 PTAASSSATSNYDLDKTVSHTQQPVGSVKRLSVSVLVND---------QAKGGKPVPLNP 398 Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 + L ++ ++V A G +++RGDT++I +M F Q Sbjct: 399 AQLGQMKQLVENAIGFDAKRGDTVSIVNMPFTAAQ 433 >gi|109947514|ref|YP_664742.1| flagellar MS-ring protein [Helicobacter acinonychis str. Sheeba] gi|109714735|emb|CAJ99743.1| flagellar basal-body M-ring protein [Helicobacter acinonychis str. Sheeba] Length = 567 Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 123/427 (28%), Positives = 214/427 (50%), Gaps = 25/427 (5%) Query: 3 ILDQLLQFF-----KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEV 57 +L +++ FF K +L +LI A ++ + + F + Y L+ L+ Sbjct: 6 LLQRIVDFFIKLNKKQKIALIAMGVLITALIVFLLLYPFKEKGYVQGG--YGVLFEGLDP 63 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 SD I L + I +++S + +I +P V + RI LA+QG+P +S G+E+FD Sbjct: 64 SDNALILQYLQQNQIPYKVSKD-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFDS- 120 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 FG T F Q + +RA+EGE++RTI+S++ I+ A VHI +P F P+ASVM+ Sbjct: 121 KDFGATDFDQNVKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180 Query: 178 RAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSL 231 + + P + S I++L+AAAVP L + +V +++ G+ L ++ N + + L Sbjct: 181 K-LKPDMRLSPTQILGIKNLIAAAVPKLTIENVKIVNENGEPLGEGDILENSKELALEQL 239 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRL 290 Q ++ +E I LA +G N A V AE + ++ + +DP++ V L Sbjct: 240 HYKQNFENILESKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNL 299 Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 + + + Q V N+ V K + E +K + +NYE+ K+I+ Sbjct: 300 EEKKEGAPKKQVGGVPGVVSNIGPVQGLKD--NKDQEKYEKSQNTTNYEVG-KTISEIKG 356 Query: 351 NY-KLERLSIAVVVN-KGRLTEVLGRSADQGKI--DSYLAEINKIVSAATGINSRRGDTI 406 + L RL+ AVVV+ K ++ G +A + + D L +IN +V A G N RGD + Sbjct: 357 EFGTLVRLNAAVVVDGKYKIALKDGTNALEYEPLSDEALKKINALVKQAIGYNQNRGDDV 416 Query: 407 TITSMDF 413 +++ +F Sbjct: 417 AVSNFEF 423 >gi|296103640|ref|YP_003613786.1| flagellar M-ring protein [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058099|gb|ADF62837.1| flagellar M-ring protein [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 302 Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 83/255 (32%), Positives = 137/255 (53%), Gaps = 5/255 (1%) Query: 35 LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKAR 94 + +A F+ P Y L+ + + I LS+ N+ +RI G I VP+S V + R Sbjct: 41 VIIALMFWAKEPDYRVLFSNISDEEGGAIVAQLSQLNVPYRIDTPGGVIMVPASQVHEVR 100 Query: 95 IHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARV 154 + LA QGLP G+EL D+ FG++ F +++ RALEGE+ARTI+++ I +A V Sbjct: 101 MKLAQQGLPKGG-GVGFELLDQ-EKFGVSQFTEQVNYQRALEGELARTIENLGPIQSACV 158 Query: 155 HIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDS 212 H+ P F + +PTASV + + ++ AI HL+++AV L G VT++D Sbjct: 159 HLATPKPSMFVREQKKPTASVTVNLLQGRTLDDSQVVAITHLISSAVTGLAAGSVTIVDQ 218 Query: 213 TGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272 G LLT + + R + L I+ + + I + LA +G +N R+ V A+++ Q+ Sbjct: 219 RGNLLTQSGL-RGLQTAHLKYTSEIETDYQQRIQRILAPLVGDENIRAQVTAQIDFTEQE 277 Query: 273 IREIVYDPDSKVERS 287 + Y P+S E++ Sbjct: 278 QTQEQYQPNSDPEKN 292 >gi|329298594|ref|ZP_08255930.1| flagellar MS-ring protein [Plautia stali symbiont] Length = 573 Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 81/247 (32%), Positives = 135/247 (54%), Gaps = 11/247 (4%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I L++ NI ++ ++NG ++ VP+ + + LA QG Sbjct: 48 WAKAPDYRVLYNNLSDEDGGAIVTQLTQMNIPYQFAENGGALMVPADKEHELSLRLAQQG 107 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL DK FG++ F ++I RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 108 LPKGGS-VGFELMDK-EKFGISQFSEQINYQRALEGELARTIETLGPVKSARVHLAMPKP 165 Query: 162 GSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 F + P+ASV + RA++ +AI+H+V+++V L +G+VTV+D G+L Sbjct: 166 TLFVREQKSPSASVTLNLQPGRALDKG---QIQAIQHMVSSSVAGLPLGNVTVVDQAGRL 222 Query: 217 LTANEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LT ++ E R++ L ++ + I L L N + V A++N D + + Sbjct: 223 LTRSDSEGRDLNDAQLKYASEVEARYQQRIEAILNPILDQGNVHAQVTAQINFDRSEQTD 282 Query: 276 IVYDPDS 282 Y P++ Sbjct: 283 EKYQPNA 289 >gi|34498454|ref|NP_902669.1| flagellar MS-ring protein [Chromobacterium violaceum ATCC 12472] gi|34104309|gb|AAQ60668.1| flagellar M-ring protein [Chromobacterium violaceum ATCC 12472] Length = 542 Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 110/411 (26%), Positives = 197/411 (47%), Gaps = 44/411 (10%) Query: 25 LASVILVPIMLFMAARFFV--NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 L ++L+ I L + A ++ + Y ++ E + AL I +R+ Sbjct: 15 LLPIVLLAIGLSVVATLWLWRDDASYKPVFGAQEKVSGADMMAALDAEKIPYRVHPQTGQ 74 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 + VP + +AR+ LAA+G+ + +G EL DK + G++ F+Q++ R LEGE+ ++ Sbjct: 75 VLVPDGDLARARMQLAAKGV-VAQLPAGLELLDKNDPLGVSQFVQDVRFRRGLEGELVQS 133 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLVAAAV 199 IQ++ + +ARVH+ +P SF G ++ ++ + P S+E A+ LVA +V Sbjct: 134 IQALDPVRSARVHLSLPRSTSFVTAGGEKGSASVVVTLKPGQQLSSEQIAAVVKLVAGSV 193 Query: 200 PNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDN 257 +LD VT++D G LL+A + + I G + + + E N L LG N Sbjct: 194 ASLDPSQVTLVDQAGNLLSAHVDLSDGGIAGNNSEAARRFRDEALQNARDLLTPALGAGN 253 Query: 258 FRSAVVAELNMD-TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVS 316 F+ +V A+++ D ++ RE K + +++ +A R ETS A+ V ++ S Sbjct: 254 FKVSVTADVDNDRVEETRE-------KYGEAPKVTNEASREETSTERMALGVPGSL---S 303 Query: 317 DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK------------LERLSIAVVVN 364 +R V NTD ++ N+K+ T Y L RLS+AV +N Sbjct: 304 NRPV-------NTDSSSPAADKAGNSKNAVTRQYAYDRNITNIKRARGTLRRLSVAVALN 356 Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 + +G + LA I+K++ GIN+ RGD + ++++ F + Sbjct: 357 QA------AAPGGKGWQPAELANIDKLLRNGLGINAERGDVLAVSTLRFAQ 401 >gi|237752970|ref|ZP_04583450.1| flagellar basal-body m-ring protein flif [Helicobacter winghamensis ATCC BAA-430] gi|229375237|gb|EEO25328.1| flagellar basal-body m-ring protein flif [Helicobacter winghamensis ATCC BAA-430] Length = 572 Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 137/487 (28%), Positives = 246/487 (50%), Gaps = 56/487 (11%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNS---------PHYDNLY 52 A+ +Q+ +K + +I+ILA++++V + F++A NS P Y L+ Sbjct: 5 ALFEQIRNLYKKLNK--KQKIVILATIVVV--VGFISALIVWNSTSNKTGILYPGYAVLF 60 Query: 53 VKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYE 112 + D I L + I ++I + ++I +P V + R+ LA+ G+P SS G+E Sbjct: 61 EGVSPEDGALIIQQLQQDKIPYKIPKD-NTILIPQEFVYEERMKLASNGIPKSSK-IGFE 118 Query: 113 LFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPT 172 +FD FG T F Q I +RA+EGE+ARTI+S++ I A VH+ P+ F PT Sbjct: 119 IFD-TKDFGATDFDQRIKYLRAIEGELARTIESLAPIQKATVHLAQPEKTVFISEQTPPT 177 Query: 173 ASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL 227 ASV++ + + P K I+++V++AVPNL + +V V++ G+ L+ E++ Sbjct: 178 ASVVLVFKPAQTLTP---KQISGIKNIVSSAVPNLTIQNVEVVNEKGEPLS--ELDELGG 232 Query: 228 GKSLSIVQA-----IQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPD 281 + L++ Q +H +E I L+ G + + V AE + ++ + YDP+ Sbjct: 233 ARELAVAQLRYKTDFEHALEEKIVNILSPIAGGREGVVAKVTAEFDFAQKESTQEYYDPN 292 Query: 282 SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEE------Q 335 + V RSI+ + ++ E +P+ V P V P+ + LE+ + KE+ Sbjct: 293 NVV-RSIQDLE--EKREGFRPKEIGGV----PGVVSNIGPV-QGLEDDNTKEKYEKTQNT 344 Query: 336 SNYEINTKSIATTHDNY-KLERLSIAVVVNKGRLTEVLGRSADQGKI----DSYLAEINK 390 +N+EI +K+I+ + + RLS AVVV+ E+ +Q K + + +I+ Sbjct: 345 TNFEI-SKTISNIKGEFATIRRLSAAVVVDGRYEKELNEEGVEQLKYIALNEEDMTKISA 403 Query: 391 IVSAATGINSRRGDTITITSMDFLENQL--FNSGTVQVSFMDILSRHFATVINALVF-LV 447 +V A G N++RGD +++++ L QL F + T F++ ++ + L + LV Sbjct: 404 LVRQAIGYNNQRGDEVSVSNFQ-LNGQLSGFKARTPLERFLEASAKLLEPFMPLLKYVLV 462 Query: 448 GTLLVTF 454 G +L F Sbjct: 463 GIILFFF 469 >gi|224418248|ref|ZP_03656254.1| flagellar MS-ring protein [Helicobacter canadensis MIT 98-5491] gi|253827573|ref|ZP_04870458.1| flagellar M-ring protein [Helicobacter canadensis MIT 98-5491] gi|313141781|ref|ZP_07803974.1| flagellar basal-body m-ring protein flif [Helicobacter canadensis MIT 98-5491] gi|253510979|gb|EES89638.1| flagellar M-ring protein [Helicobacter canadensis MIT 98-5491] gi|313130812|gb|EFR48429.1| flagellar basal-body m-ring protein flif [Helicobacter canadensis MIT 98-5491] Length = 576 Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 133/482 (27%), Positives = 236/482 (48%), Gaps = 46/482 (9%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNS---------PHYDNLY 52 A+ +Q+ +K + +I+ILA++ V I+ F++ NS P Y L+ Sbjct: 5 ALFEQIRNLYKRLNK--KQKIVILATI--VAIVAFISGLIVWNSMNNKAGVMYPGYAVLF 60 Query: 53 VKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYE 112 + D I L + I ++I + ++I +P +V + R+ LA+ G+P SS G+E Sbjct: 61 EGVSPEDGALIIQQLQQDKIPYQIPKD-NTILIPQELVYEQRMKLASNGIPKSSK-VGFE 118 Query: 113 LFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPT 172 +FD FG T F Q + +RA+EGE+ARTI+S+S I A VHI P+ F PT Sbjct: 119 IFD-TQDFGATDFDQRVKYLRAIEGELARTIESLSPIQKATVHIAQPEKSVFVSEQTPPT 177 Query: 173 ASVMIRAINPS---VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEM--ERNI 226 ASV++ A P K I+++V++A+PNL + +V V++ G+ L+ +E+ R + Sbjct: 178 ASVVL-AFKPGQTLTPKQISGIKNIVSSAIPNLTIENVEVVNEKGEPLSELDELGGAREL 236 Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGV-DNFRSAVVAELNMDTQQIREIVYDPDSKVE 285 L + +E I LA G + + V AE + ++ + YDP++ V Sbjct: 237 AAAQLRYKNNFEQSLEEKIINILAPIAGGREGVVAKVTAEFDFAQKESTQEYYDPNNVVR 296 Query: 286 RSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKE--EQS----NYE 339 L ++ E S+P+ V P V P+ + LE+ + +E E+S NYE Sbjct: 297 SEQNLE---EKREGSKPKEIGGV----PGVVSNIGPV-QGLEDENNRERYEKSQTTTNYE 348 Query: 340 INTKSIATTHDNY-KLERLSIAVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSA 394 + +K+I+ + + RLS AVVV+ ++ +Q + +S + +I+ +V Sbjct: 349 V-SKTISNIKGEFATIRRLSAAVVVDGKYQKQIDENGIEQLQYTALNESEMQQISALVRQ 407 Query: 395 ATGINSRRGDTITITSMDF-LENQLFNSGTVQVSFMDILSRHFATVINALVF-LVGTLLV 452 A G N +RGD +++++ ++ F + T F++ + L + +VG +L Sbjct: 408 AIGFNEQRGDEVSVSNFQLNGQDSGFKARTPLERFLETAQNLLTPFMPLLKYVIVGIILF 467 Query: 453 TF 454 F Sbjct: 468 LF 469 >gi|226944512|ref|YP_002799585.1| flagellar M-ring protein [Azotobacter vinelandii DJ] gi|226719439|gb|ACO78610.1| flagellar M-ring protein [Azotobacter vinelandii DJ] Length = 576 Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 82/243 (33%), Positives = 130/243 (53%), Gaps = 10/243 (4%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSS 105 P Y L+ L+ +D RI L I +R+S+ G S+ VP+ + R+ LA QGLP Sbjct: 56 PEYRVLFANLDEADGGRIIGELDRRAIPYRLSEGGHSLLVPADQLHTLRLQLAEQGLPQG 115 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 N G+EL DK +FG++ F ++I R LEGE+AR+I+S+ + ARVH+ M F Sbjct: 116 G-NVGFELLDK-QAFGVSQFAEQINFQRGLEGELARSIESLGPVSRARVHLAMAKQSVFV 173 Query: 166 KIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN 220 + ASV++ R + S AI HLV+++VP L + VTV+D G+LL+ Sbjct: 174 REREPARASVVLNLQPGRELGES---QVNAIAHLVSSSVPGLSIDAVTVVDQNGRLLSRQ 230 Query: 221 EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP 280 R++ G L + ++ + I LA LG N R+ VVA+++ +++ Y P Sbjct: 231 GGARDLDGTQLDYIDEVERSYQRRIENILAPILGAQNVRAQVVAQIDFASREQTAERYAP 290 Query: 281 DSK 283 + + Sbjct: 291 NQQ 293 >gi|288573030|ref|ZP_06391387.1| flagellar M-ring protein FliF [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568771|gb|EFC90328.1| flagellar M-ring protein FliF [Dethiosulfovibrio peptidovorans DSM 11002] Length = 497 Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 117/390 (30%), Positives = 183/390 (46%), Gaps = 50/390 (12%) Query: 48 YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 ++ L+ LE+ D I L E I +R+ ++I +P V + R+ LA GLP Sbjct: 23 WEPLFSGLEIQDEASIVAYLKENKIPYRLDPGANAILLPEEHVYEVRLELARAGLPKGGV 82 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 GYE+FD V G++ F Q+IT VRALEGE+ART+ I + A+++IV+P F + Sbjct: 83 K-GYEIFDDVQ-MGMSEFQQKITYVRALEGELARTVAQIDSVEYAKINIVIPQPHLFLEQ 140 Query: 168 GARPTASVMIR-----AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM 222 TASV++R +INP K AI HLV+ +V L DVTV+D+ G +L+ + + Sbjct: 141 QQPATASVLVRIHQGASINPEQIK---AIVHLVSHSVEGLQPDDVTVVDTDGNVLS-DLI 196 Query: 223 ERNIL------GKSLSIVQ-----AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ 271 E ++ G+++S VQ + E+E + L G + + +L++D + Sbjct: 197 EDDMFIYSDGAGRTVSSVQRELERQQEKEMERKVRAMLERVFGPGSVVVRIKVDLDLDKK 256 Query: 272 QIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT-- 329 + Y P K RSE + ES V +P +T Sbjct: 257 RNASTQYIPGPT-------GKGVVRSEQNTEESYVGPGGPTGGAPGTTTNIPGYAIDTGA 309 Query: 330 ------DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS 383 +K + +NYEI T + RL+ +V+V+ G L+E Sbjct: 310 GGVGEYNKTDTVTNYEITTHESENVETPGSIRRLTASVLVD-GDLSE------------E 356 Query: 384 YLAEINKIVSAATGINSRRGDTITITSMDF 413 L +I +V+ A G++S RGD I I SM F Sbjct: 357 QLEDIRALVAPAIGLDSGRGDQIAIQSMKF 386 >gi|311105960|ref|YP_003978813.1| flagellar M-ring protein FliF [Achromobacter xylosoxidans A8] gi|310760649|gb|ADP16098.1| flagellar M-ring protein FliF [Achromobacter xylosoxidans A8] Length = 553 Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 129/466 (27%), Positives = 216/466 (46%), Gaps = 70/466 (15%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + + P Y L+ L+ D I AL N+ +R ++ G+++ VP+ V AR+ LA+Q Sbjct: 45 MWSSEPKYKVLFSNLDDRDGGAIVAALGTMNVPYRYNETGTAVLVPADRVYDARLQLASQ 104 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S G+EL D FG + F ++I R LEGE+AR+I+++ + ARVH+ MP Sbjct: 105 GLPRGGS-VGFELMDNAR-FGASQFTEQINYQRGLEGELARSIEAMHTVQHARVHLAMPR 162 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS---AEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + PTASV++ ++P S AI LVA++VP L +V+++D G+LL Sbjct: 163 QSLFVRERQAPTASVLLN-MHPGRSLSDAQVSAISWLVASSVPELTAENVSIVDQNGRLL 221 Query: 218 TANEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 +A E R + + V+ ++ I L +G N + A+++ ++ Sbjct: 222 SAPMGEGRGMDADQMRFVREMEQRTVERILTILNPLVGPGNVHAQASADVDFARREETSE 281 Query: 277 VYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPL-PRS-LEN------ 328 VY P+ + ++ S+ Q S++SQ V Q +P + P P++ + N Sbjct: 282 VYRPNQEPGQAAVRSQ--QTSDSSQ--RGVNAAQGVPGALSNQAPANPQAPIANPPQPQP 337 Query: 329 -------------------------TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 ++++ +NYE++ L+RLS+AVVV Sbjct: 338 PRPGQPQQPANAQQQTSTQAATGNLNERRDATTNYEVDRTISHIKQPVGNLKRLSVAVVV 397 Query: 364 NKGRLTEVLGRSADQGKIDSYLA-EINK---IVSAATGINSRRGDTITITSMDFLENQLF 419 N R + G++ E+NK +V A G + RGD++ + N F Sbjct: 398 NYMRDKD--------GELQPLPPEELNKLTNLVREAMGYSEPRGDSLNLV------NSQF 443 Query: 420 NSGTVQVSFM---DILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 N G V +++S F T+ L +LVG +L +L LRR Sbjct: 444 NDGPPPVPMWRDPEMIS-LFKTI---LAWLVGGVLALWL-YRLLRR 484 >gi|311695217|gb|ADP98090.1| flagellar MS-ring protein [marine bacterium HP15] Length = 569 Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 98/401 (24%), Positives = 192/401 (47%), Gaps = 22/401 (5%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92 + L +A + P+Y + L + ++ L ID+++ ++ VPS V Sbjct: 51 VALGLAVVLWAQEPNYQPVVGDLSSYNPQDVTTILESNGIDYKMDPRTGALLVPSDQVYN 110 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 AR+ LAA+G+ + GYEL D+ G + FM+ I+ R LEGE+ART+ S+ G+ A Sbjct: 111 ARLKLAAEGV-TDRQTMGYELLDQERGLGTSQFMETISYRRGLEGELARTVASMRGVRNA 169 Query: 153 RVHIVMPDMGSFRKIGARPTASVMIR--AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 RVH+ +P+ F + P+ASV + A + AI +LVA +VP + VTV+ Sbjct: 170 RVHLAIPERSVFVRDARDPSASVFLEVFAGRRPEQEQINAIVNLVAGSVPMMSKEHVTVV 229 Query: 211 DSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM 268 D G LLT + + + ++ + + + +G +R+ V A+L+ Sbjct: 230 DQNGNLLTGKQSQSGADQMADQYEYTAKVEERLTRRVASLIGPIVGDGRYRAEVSADLDF 289 Query: 269 DTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ-----------PESAVTVEQNMPHVSD 317 + + E +++P+ + RS R + +R+ +Q P +A EQ + Sbjct: 290 SSVEQAEELFNPEQQAVRSERELTE-RRTAGAQGGIPGALANQPPANATVPEQAAGGDGE 348 Query: 318 RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSA 376 + P P ++ + E NYE++ + +++R+++A+ V+ ++ + G + Sbjct: 349 QAAPAPVNV----RSESTRNYEMDRTVSYRRQELGRVKRVTVALAVDDMKVVDPQTGEVS 404 Query: 377 DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 + + L ++ +V A G ++ RGD++T+ + F + + Sbjct: 405 YEPWPEQELQRLSMLVRDAVGYSAARGDSVTVMNTAFAQEE 445 >gi|126734120|ref|ZP_01749867.1| flagellar M-ring protein FliF, putative [Roseobacter sp. CCS2] gi|126716986|gb|EBA13850.1| flagellar M-ring protein FliF, putative [Roseobacter sp. CCS2] Length = 526 Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 117/391 (29%), Positives = 189/391 (48%), Gaps = 17/391 (4%) Query: 28 VILVPIMLFMAARFFVNSPHYDN---LYVKLEVSDVNRISVALSEANIDFRISDNGSSIS 84 +I+V ++FMA + L+ LE + AL + + + + G++I Sbjct: 19 LIVVTGVVFMAVLLLARGAGTKDMSLLFGGLEPRAAGDVVTALDQQGVAYEV--RGNAIY 76 Query: 85 VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144 VP+ R+ LA QGLP++ S GYEL D ++ F T+ M + RA EGE+ARTI Sbjct: 77 VPTVQRDGLRMALAGQGLPATGSQ-GYELLDSLSGFSTTAQMFDAAYWRAKEGELARTIV 135 Query: 145 SISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDM 204 + I AARVHI P F+ ++ A + A + +A++ L+ AAVP L Sbjct: 136 ASPHIRAARVHISTPSQRPFQAAQSQTAAVTVTMAGTTLSTQHLKALQFLIGAAVPGLSP 195 Query: 205 GDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQH--EIEMNINKALAAFLGVDNFRSAV 262 DV V+D G LL+ E + N G + H + + LAA +GV N V Sbjct: 196 ADVAVIDDEGGLLS--EADTNSAG-----MNGDNHAENLRKRAERLLAARVGVGNAVVEV 248 Query: 263 VAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPL 322 + ++T+ I E DPDS++ S +++ + S S+ VTV N+P Sbjct: 249 SVDQVLETEMITERRVDPDSRIAISTDVTESSGNSTDSR-GGDVTVASNLPDGDAGARSG 307 Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382 S EN++ + +NYE++ T + RL++AV+VN T G + + + Sbjct: 308 SASNENSESR-TLTNYEVSQTERQLTKAPGAIRRLTVAVLVNDLVDTAADGTTTTTPRTE 366 Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413 LA + +V++A G++ RGD +T+ SM F Sbjct: 367 GELAALEDLVASAVGLDVDRGDVLTLRSMPF 397 >gi|167574616|ref|ZP_02367490.1| flagellar MS-ring protein [Burkholderia oklahomensis C6786] Length = 448 Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 110/380 (28%), Positives = 193/380 (50%), Gaps = 34/380 (8%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 +Y ++ E + +++ L I +RI + + VP + + +AR+ LAA+G+ + Sbjct: 24 NYKPVFGAREPVQLGQLASVLDGERIPYRIHPDTGQVLVPRADLARARMILAARGV-TGQ 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 G E D+ + G + F+Q++ R LE E+A+++ ++ + ARVH+ + SF Sbjct: 83 PAPGLEQIDRDDPLGTSQFVQDVRFRRGLESELAQSVMTMEAVEKARVHLSIAKSSSFVM 142 Query: 167 I-GARPTASVMIRAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM 222 + G + +ASVM+ + P E AI +LVA +VPNL V+V+D TG L+A Sbjct: 143 MDGEKSSASVML-TLKPGRRLGKEQIAAILNLVAGSVPNLAPSRVSVVDQTGAFLSARVD 201 Query: 223 ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPD 281 + G + E ++ LA LG+DNFR +V A +N D +++RE Sbjct: 202 LDDDFGDGNDAAARFRDETIRSVQDLLAPTLGIDNFRVSVTAAVNNDRVEEMRE------ 255 Query: 282 SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEE------Q 335 + + +++ +A R E ++ A+ V ++ S+R V P S D + Q Sbjct: 256 -QFGEAPKVTNEATRDEQNRDRIALGVPGSL---SNRPVDAPASAPQADDGVQRHATTRQ 311 Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR--SADQGKIDSYLAEINKIVS 393 Y+ N I H +LE+LS+AVV+N ++ G+ SA+Q LA I +I+ Sbjct: 312 YAYDRNVTQI--KHSRGRLEKLSVAVVLNNA-VSPAKGKPWSAEQ------LAHIEQILR 362 Query: 394 AATGINSRRGDTITITSMDF 413 GI+++RGD + ++S+DF Sbjct: 363 NGLGIDAQRGDQLVVSSLDF 382 >gi|119715006|ref|YP_921971.1| flagellar M-ring protein FliF [Nocardioides sp. JS614] gi|119535667|gb|ABL80284.1| flagellar M-ring protein FliF [Nocardioides sp. JS614] Length = 531 Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 88/275 (32%), Positives = 140/275 (50%), Gaps = 13/275 (4%) Query: 16 SLGRTRILIL--ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73 +LG+ + ++ A+++L M+F +V++P Y LY L SD + I L Sbjct: 20 TLGQQVVSVIGTAAILLAAFMVFR----WVSTPDYAPLYSNLAASDASAIVDELDSQGTP 75 Query: 74 FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 +++++ GS++ VP V RI L+ QGLP SS GY L D + F ++ R Sbjct: 76 YKLANGGSTVMVPRDSVYATRISLSGQGLPEQSSGQGYSLLDN-QDISTSEFQEQTDFKR 134 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEAI 191 A+EGE+A TI+++ G+ A VH+ +P F PTASV+I + + + +AI Sbjct: 135 AMEGELASTIEAVDGVTTAVVHLALPPAKVFSDQQDPPTASVLIDTAAGTTFNAEQVQAI 194 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL--SIVQAIQHEIEMNINKAL 249 HLVA+++ LD +VTV DS+GK+L++++ LG S V + Q + I L Sbjct: 195 VHLVASSIDGLDPDNVTVADSSGKVLSSSDA--GALGASTRDQQVTSFQQQTSQRIQSML 252 Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV 284 LG N V A+L+ D Y +KV Sbjct: 253 DRVLGPGNSTVQVTADLDFDKSVSESTTYGKSNKV 287 >gi|94314180|ref|YP_587389.1| flagellar MS-ring protein [Cupriavidus metallidurans CH34] gi|93358032|gb|ABF12120.1| flagellar MS-ring protein [Cupriavidus metallidurans CH34] Length = 563 Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 81/264 (30%), Positives = 141/264 (53%), Gaps = 19/264 (7%) Query: 31 VPIMLFMAAR--------FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 +P+ML AA + +P Y LY L D + +L + N+ ++ ++ G + Sbjct: 23 LPMMLGGAALVAAIAVGVMWSRAPDYKVLYSNLSERDGGAVIQSLQQMNVPYKFAEGGGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 + VP+ V + R+ LA+QGLP S + +G EL D FG++ F +++ R LEGE+AR+ Sbjct: 83 VMVPADKVAETRLRLASQGLPKSGT-TGMELMDN-QKFGISQFAEQVNYQRGLEGELARS 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAA 197 I+SI + +ARVH+ +P F + +PTASV++ RA++ AI HLV++ Sbjct: 141 IESIGAVQSARVHLAIPKPTLFVRERQKPTASVVLQLYPGRAVDEG---QVAAITHLVSS 197 Query: 198 AVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDN 257 +VP L ++++D G LL+ +R++ L VQ ++ + LA LG DN Sbjct: 198 SVPELTPKSISIVDQQGNLLSGTN-DRSLDASQLKYVQQVEQGYVKRVESILAPILGKDN 256 Query: 258 FRSAVVAELNMDTQQIREIVYDPD 281 + V A+++ + + + Y P+ Sbjct: 257 IHAQVTADVDFSSVEHTDESYKPN 280 >gi|213622939|ref|ZP_03375722.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 344 Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 83/264 (31%), Positives = 139/264 (52%), Gaps = 11/264 (4%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 44 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 103 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 104 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 161 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + P+ASV + RA++ A+ HLV++AV L G+VT++D +G Sbjct: 162 PSLFVREQKSPSASVTVTLEPGRALD---EGQISAVVHLVSSAVAGLPPGNVTLVDQSGH 218 Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT +N R++ L ++ I+ I L+ +G N + V A+L+ ++ Sbjct: 219 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 278 Query: 275 EIVYDPDSKVERSIRLSKDAQRSE 298 E Y P+ ++ S+ SE Sbjct: 279 EEHYSPNGDASKATLRSRQLNISE 302 >gi|167567191|ref|ZP_02360107.1| flagellar MS-ring protein [Burkholderia oklahomensis EO147] Length = 441 Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 110/380 (28%), Positives = 193/380 (50%), Gaps = 34/380 (8%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 +Y ++ E + +++ L I +RI + + VP + + +AR+ LAA+G+ + Sbjct: 24 NYKPVFGAREPVQLGQLASVLDGERIPYRIHPDTGQVLVPRADLARARMILAARGV-TGQ 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 G E D+ + G + F+Q++ R LE E+A+++ ++ + ARVH+ + SF Sbjct: 83 PAPGLEQIDRDDPLGTSQFVQDVRFRRGLESELAQSVMTMEAVEKARVHLSIAKSSSFVM 142 Query: 167 I-GARPTASVMIRAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM 222 + G + +ASVM+ + P E AI +LVA +VPNL V+V+D TG L+A Sbjct: 143 MDGEKSSASVML-TLKPGRRLGKEQIAAILNLVAGSVPNLAPSRVSVVDQTGAFLSARVD 201 Query: 223 ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPD 281 + G + E ++ LA LG+DNFR +V A +N D +++RE Sbjct: 202 LDDDFGDGNDAAARFRDETIRSVQDLLAPTLGIDNFRVSVTAGVNNDRVEEMRE------ 255 Query: 282 SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEE------Q 335 + + +++ +A R E ++ A+ V ++ S+R V P S D + Q Sbjct: 256 -QFGEAPKVTNEATRDEQNRDRIALGVPGSL---SNRPVDAPASAPQADGGVQRHATTRQ 311 Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR--SADQGKIDSYLAEINKIVS 393 Y+ N I H +LE+LS+AVV+N ++ G+ SA+Q LA I +I+ Sbjct: 312 YAYDRNVTQI--KHSRGRLEKLSVAVVLNNA-VSPAKGKPWSAEQ------LAHIEQILR 362 Query: 394 AATGINSRRGDTITITSMDF 413 GI+++RGD + ++S+DF Sbjct: 363 NGLGIDAQRGDQLVVSSLDF 382 >gi|225871927|ref|YP_002753381.1| flagellar M-ring protein FliF [Acidobacterium capsulatum ATCC 51196] gi|225792578|gb|ACO32668.1| flagellar M-ring protein FliF [Acidobacterium capsulatum ATCC 51196] Length = 534 Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 109/380 (28%), Positives = 192/380 (50%), Gaps = 21/380 (5%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++ + LY L D ++ L+ A I F +S +G+++ VP+ + KAR+ + A Sbjct: 53 WYGTRTDWRTLYAGLNPDDARTMAGQLTTAGIPFEVSPDGTALEVPAPDLDKARLTVTAG 112 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 G P SS G+ LFDK N G + F +++ RALEGE+ +TI ++ + ++RV++VMP Sbjct: 113 GGP-SSGRMGFALFDKPNWVG-SDFDEQVNYQRALEGELEQTIDTLEDVRSSRVNLVMPH 170 Query: 161 MGSFRKIGARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F ASV++R + ++ + A+AIR+LVAAAV L +V ++ + G Sbjct: 171 DSLFTSEQRAAKASVVLRLKHRTLSEEEAQAIRNLVAAAVDGLTPANVVLVSANG----- 225 Query: 220 NEMERNILGK-SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 E + G+ +L + Q + + + L G+ N +AV + + T + +Y Sbjct: 226 -EDQFGAHGQNALELAQ--EQALTQQVIGTLQPVAGLGNVHAAVHMDFDTATTSETDEIY 282 Query: 279 DPDSKVERSIRLSKDAQRSETSQPESA--VTVEQNMPHV-SDRKVPL--PRSLENTDKKE 333 +P+ S++ S +S SQP +A N P+ + K PL P++ + +E Sbjct: 283 NPNQTATLSMQRST---QSTGSQPVAAGVPGAASNAPNSNATGKPPLYPPQATGQQNSQE 339 Query: 334 EQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVS 393 E S Y ++ K KL RL++AVV+N+ + + + Q + + + + ++V Sbjct: 340 ESSTYGVSKKIEHRAQGPGKLNRLTVAVVLNEPWVMQGK-KKVWQPRSAAEMQRLTQLVQ 398 Query: 394 AATGINSRRGDTITITSMDF 413 AA G N RGD +T+ M F Sbjct: 399 AAVGYNQARGDIVTVEQMPF 418 >gi|330809237|ref|YP_004353699.1| flagellar M-ring protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377345|gb|AEA68695.1| Putative Flagellar M-ring protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 458 Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 104/393 (26%), Positives = 198/393 (50%), Gaps = 46/393 (11%) Query: 18 GRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS 77 GRTR+ ++ ++++V L A+ ++V P Y LY + + +I LS+ ++ +RI+ Sbjct: 12 GRTRVFLIGALLIV--GLLAASAWWVLRPQYVALYRNADEASQAQILATLSQRHVPYRIN 69 Query: 78 DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137 +I V + AR++LA G+P+ +G+ELFDK + +G++ F Q+I RA+EG Sbjct: 70 TQQGAIEVLADHAASARMYLAEAGIPTRG-GTGFELFDKAD-YGMSEFSQKINYQRAMEG 127 Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI--RAINPSVYKSAEAIRHLV 195 E+ARTI S+S + ARVH+ +++ P ASV++ R+ + + I+ LV Sbjct: 128 ELARTIMSMSEVEYARVHLTFKKTSLYQQAEEPPKASVIVRLRSAGTLMPQRVRGIQQLV 187 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255 ++AV + + V+VL+ G++L+A++ + L + ++ +++ + LA LG Sbjct: 188 SSAVEGMTLERVSVLNEDGQVLSASDGA-AAAPEHLQLTAQVEQVLKLKAEELLARPLGH 246 Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV 315 +V +N D +++ I P + +R K + +E S ES QN Sbjct: 247 RGVDVSVRVLMNFD--RVKSISEQP---LTNKMRREKRTESTENSNGESTSKRSQN---- 297 Query: 316 SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS 375 +R++ +YE+ T H K+ER+++ VV++ T V Sbjct: 298 -NREI----------------DYEVGKARAETEHAAGKIERITVGVVLS----TPV---- 332 Query: 376 ADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 D+ + +I ++ AA G++ +RGD + + Sbjct: 333 -----SDAQMKDIQALLEAALGLDLKRGDRLVM 360 >gi|120597294|ref|YP_961868.1| flagellar MS-ring protein [Shewanella sp. W3-18-1] gi|146294561|ref|YP_001184985.1| flagellar MS-ring protein [Shewanella putrefaciens CN-32] gi|120557387|gb|ABM23314.1| flagellar M-ring protein FliF [Shewanella sp. W3-18-1] gi|145566251|gb|ABP77186.1| flagellar M-ring protein FliF [Shewanella putrefaciens CN-32] Length = 558 Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 112/391 (28%), Positives = 185/391 (47%), Gaps = 43/391 (10%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + + Y LY E D +++ L I +R+ N ++ V VG AR+ LAA+ Sbjct: 57 LWTATAGYRPLYGSQENVDTSQVLNVLEAEGIHYRLEANTGAVLVAEEQVGNARMLLAAK 116 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 G+ + SG E D N+ G + FM++ +LEGE+ARTI S+ + AARVH+ +P Sbjct: 117 GVKAKVP-SGMEALDN-NALGTSQFMEQAKYRHSLEGELARTIMSLKLVRAARVHLAIPK 174 Query: 161 MGSF-RKIGARPTASVMIRAINPSVYKS---AEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 F R+ PTASVM++ ++P+ S EAI +LVA +V L ++ V+D G+ Sbjct: 175 QSLFIRQEPELPTASVMLQ-LDPNTRLSESQVEAIVNLVAGSVTGLTASNIKVVDQDGRY 233 Query: 217 LTAN-------EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 L+ N RN K L + ++H + N L LG DNF+ V A++N + Sbjct: 234 LSENISGNQDLSQSRN---KQLQYTRELEHSLVANAASMLEPVLGHDNFQVRVTAKVNFN 290 Query: 270 TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT 329 + + DP + V + TS +S+ ++ +P K P + Sbjct: 291 QVEETKESLDPQNVVT----------QERTSIDDSSNSIAAGIPGALSNKPPQVGTAATD 340 Query: 330 D-----KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI--D 382 D K+EE Y++ + +LE LS++V++N +A QG + Sbjct: 341 DKTRNLKQEESRQYDVGRSVRHVRYQQMQLENLSVSVLINS---------AAGQGVFNNE 391 Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413 + L + +V A G ++ RGD+ TI + +F Sbjct: 392 AQLVKFGNMVKDAIGFSAARGDSFTINAFEF 422 >gi|293605027|ref|ZP_06687421.1| flagellar M-ring protein FliF [Achromobacter piechaudii ATCC 43553] gi|292816576|gb|EFF75663.1| flagellar M-ring protein FliF [Achromobacter piechaudii ATCC 43553] Length = 558 Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 121/452 (26%), Positives = 196/452 (43%), Gaps = 50/452 (11%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + + P Y L+ L+ D I AL N+ +R ++ G+++ VP+ V AR+ LA+Q Sbjct: 45 MWTSEPKYKVLFSNLDDRDGGAIVTALGTMNVPYRYNETGTALLVPADRVYDARLQLASQ 104 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S G+EL D FG + F ++I R LEGE+AR+I+++ + ARVH+ MP Sbjct: 105 GLPRGGS-VGFELMDNAR-FGASQFAEQINYQRGLEGELARSIEAMHTVQHARVHLAMPR 162 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + PTASV++ A+ AI LVA++VP L +V+++D G+LL+ Sbjct: 163 QSLFVRERQAPTASVLLNVYPGRSMSDAQVSAISWLVASSVPELTAENVSIVDQNGRLLS 222 Query: 219 ANEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM----DTQQI 273 A E R + + V+ ++ I L +G N + A+++ +T +I Sbjct: 223 APLGEGRGMDADQMRFVREMEQRTVERILTILNPLVGPGNVHAQASADVDFARREETSEI 282 Query: 274 REIVYDPDSKVERSIRLSKDAQRS-----------ETSQPESAVTVEQNMPHVSDRKVPL 322 +P RS + S QR P +A N P + Sbjct: 283 YRPNQEPGQAAVRSQQTSDSTQRGVNPAQGVPGALSNQAPPNAQAPLANPPAAQPPRPGQ 342 Query: 323 PRSLEN-------------------TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 P + N ++++ +NYE++ L+RLS+AVVV Sbjct: 343 PPAAANAQQQQQQQQTGTQAATANLNERRDATTNYEVDRTISHIKQPVGNLKRLSVAVVV 402 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 N R + Q L ++ +V A G + RGD++ + N FN G Sbjct: 403 NYIRDKD----GEPQALPPEELNKLTNLVREAMGYSETRGDSLNLV------NSQFNDGP 452 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFL 455 + M A L +LVG +L +L Sbjct: 453 PPLP-MWRDPEMIALFKTILAWLVGLVLAFWL 483 >gi|42524763|ref|NP_970143.1| flagellar M-ring protein [Bdellovibrio bacteriovorus HD100] gi|39576973|emb|CAE78202.1| flagellar M-ring protein [Bdellovibrio bacteriovorus HD100] Length = 549 Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 117/430 (27%), Positives = 208/430 (48%), Gaps = 43/430 (10%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 Q +FFK+ LG T+ L + +V ++ + F + Y L+ + V+ I Sbjct: 11 QFREFFKN---LGPTKRLSVIAVTVIAAVALFTMLFMASGKDYVPLFTNIPTEQVSTIVG 67 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ-GLPSSSSNSGYELFDKVNSFGLTS 124 L+E N+ F++ D G +I++P ++ ++ L ++ G P S G E+FDK FG+ S Sbjct: 68 KLNEKNVPFQLRDGGKTIAIPKELLHSTQMTLMSEIGSPKMGS-IGLEIFDK-QDFGMNS 125 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RA 179 + Q+I RAL+GE+ R I +++ + ++V + +P+ +F + G + +ASV++ + Sbjct: 126 YAQKINYQRALQGELMRAINTLTAVKQSKVILALPNKKTFLEEGGQASASVVVELHQGKE 185 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS---LSIVQA 236 + P + +R+LVA +V +D VTVLD GK+LT + G S L + Sbjct: 186 LTP---EQVRGVRYLVANSVEGMDADKVTVLDERGKVLT--RVADGTTGGSNELLDLKAK 240 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 I+ ++E I L +G + V A LN E DPD RS + +++ Sbjct: 241 IEGDLEDRIEDILTKVVGHAKVVAKVDATLNHRVISSVEESVDPDKTAIRSQQSEEESLD 300 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEI--NTKSIATTHDNYKL 354 + P N+P D+ R ++ K+ + +NY++ ++I + N L Sbjct: 301 GSRTNPAGVPGSRSNLPGAEDQGTVGFR--QDVKKEIKTTNYDVPKTVRNIRESAGN--L 356 Query: 355 ERLSIAVVVNKGRL-----------TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403 ER+S+AVVV+ G + T RSA++ L + +V A G N+ RG Sbjct: 357 ERVSVAVVVD-GMMTTTTKADGTTETTWKPRSAEE------LRKYEDLVKNAIGFNTARG 409 Query: 404 DTITITSMDF 413 D++ I ++ F Sbjct: 410 DSVKIENIQF 419 >gi|89069804|ref|ZP_01157139.1| putative flagellar M-ring protein [Oceanicola granulosus HTCC2516] gi|89044605|gb|EAR50721.1| putative flagellar M-ring protein [Oceanicola granulosus HTCC2516] Length = 514 Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 119/371 (32%), Positives = 182/371 (49%), Gaps = 31/371 (8%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110 LY L+ + + AL + + GS I V S+ R+ LA +GLPS + G Sbjct: 22 LYAGLDAAAAGEVVTALDTRGEVYEV--RGSGIYVESARRDLLRMTLAGEGLPSGGAQ-G 78 Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170 YEL D ++ FG TS M + RA EGE+ARTIQS G+ A RVH+ +P F++ G + Sbjct: 79 YELLDSLSGFGTTSQMFDAAYWRAKEGELARTIQSSPGVRAVRVHVSVPANRGFQREG-Q 137 Query: 171 PTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK 229 P A+V + + + + A+A RHLVA+AV L DV V+D +G + Sbjct: 138 PAAAVTVTSAGGGLSAAQAKAFRHLVASAVTGLAPDDVAVIDESGL----------VAAA 187 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM----DTQQIREIVYDPDSKVE 285 S A Q E E + + L L V ELN+ +T+QIRE +DP+ +V Sbjct: 188 DDSSAPAAQGERERLMRERLQRLLEARVGHGNAVVELNIETETETEQIRERQFDPEGRVA 247 Query: 286 RSIRLSKD-AQRSET-SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTK 343 +++D ++RSE+ S AVTV N+P D S + + +NYE++ Sbjct: 248 ----IAEDVSERSESASGGTGAVTVASNLP---DGDAAGGGSESQASETRQLTNYEVSQV 300 Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEINKIVSAATGINSRR 402 + R+++AV++N EV G + + LA + +V++A G + R Sbjct: 301 EREVLRAPGAVRRITVAVLIND--PVEVDSGVETATPRSEEELAVLRDLVASAVGFDEAR 358 Query: 403 GDTITITSMDF 413 GD IT+ SM F Sbjct: 359 GDVITLRSMPF 369 >gi|186896782|ref|YP_001873894.1| flagellar MS-ring protein [Yersinia pseudotuberculosis PB1/+] gi|186699808|gb|ACC90437.1| flagellar M-ring protein FliF [Yersinia pseudotuberculosis PB1/+] Length = 546 Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 118/425 (27%), Positives = 210/425 (49%), Gaps = 36/425 (8%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +LD++ Q G LG IL S + + + + + +S Y L+ E + + Sbjct: 1 MLDKIKQKLSPG-QLGENTKTILMSAVALLVTAAIIFSLWRSSQGYTALFGSQENIPITQ 59 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + L I +RI+ + + V + +GKARI LAA+G+ +++ GYEL DK + G Sbjct: 60 VVEVLEGEAIAYRINPDNGQVLVAENQLGKARILLAAKGI-TATLPIGYELMDKESMLGS 118 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRAIN 181 + F+Q + R+LEGE+A+++ ++S + ARVH+ M + SF A +ASV++R Sbjct: 119 SQFIQNVRYKRSLEGELAQSMMALSAVEYARVHLGMSEASSFAISNHADNSASVVLRLRY 178 Query: 182 PSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQ 235 + + AI LVA ++P + +V V+D G+LL+ AN + + Sbjct: 179 GQTLSTEQVGAIVQLVAGSIPGMKPANVRVVDQHGELLSQAYQANSEGVPSVKSGTELAH 238 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV--YDPDSKVERSIRLSKD 293 +Q E NI L + +G +N+R +V +L+M +I E Y PD R++ + Sbjct: 239 YLQSTTEKNIANLLNSVIGANNYRISVSTQLDMS--RIEETAEHYGPDP------RINDE 290 Query: 294 AQRSETSQPESAVTV-----EQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 + E S + A+ + Q +P + P S +K Y+ N + + Sbjct: 291 NIQQENSNDDMAMGIPGSLSNQPIPQSQAGQTPAAVSRSQAQRK---YIYDRNIRHV--R 345 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 + YKLE++++AVV+NK L + + +Q + E+ +++ A GI+ +RGD++TI Sbjct: 346 YPGYKLEKMTVAVVLNKS-LPVLEQWTPEQQE------ELKRLIEDAAGIDVKRGDSLTI 398 Query: 409 TSMDF 413 M F Sbjct: 399 NMMAF 403 >gi|149377888|ref|ZP_01895617.1| flagellar M-ring protein FliF [Marinobacter algicola DG893] gi|149357830|gb|EDM46323.1| flagellar M-ring protein FliF [Marinobacter algicola DG893] Length = 565 Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 104/401 (25%), Positives = 193/401 (48%), Gaps = 30/401 (7%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92 + L +A + P+Y + + + ++ L +ID+R+ ++ VPS V Sbjct: 51 VALGVAVVLWAQEPNYQPVVGDMSGYNPQDVTTILDANSIDYRMDPRTGALLVPSDEVYN 110 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 AR+ LAA+G+ + GYEL D+ G + FM+ I+ R LEGE+ARTI S+ + AA Sbjct: 111 ARLKLAAEGV-TDEQTMGYELLDQDRGLGTSQFMETISFRRGLEGELARTIGSMRTVRAA 169 Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVL 210 RVH+ +P+ F + PTASV + I + + +I +LVA ++P + +VTV+ Sbjct: 170 RVHLAIPERSVFVRDARTPTASVFLEVIAGRRLEQEQIASIVNLVAGSIPEMSKDNVTVV 229 Query: 211 DSTGKLLTANE--MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM 268 D +G LLT E + + ++ + + + +G FR+ V A+L+ Sbjct: 230 DQSGNLLTGREDGGDSQQIEDQYDYTSRVEDRLARRVASMVRPVVGDGRFRAEVTADLDF 289 Query: 269 DTQQIREIVYDPDSKVERSIRLSKDAQRSE--------------TSQPESAVTVEQNMPH 314 + + E +++P+ + RS R Q SE ++QP + TV + Sbjct: 290 SSVEQAEELFNPEQQAVRSER-----QMSERRAGGGASGIPGALSNQPPAQPTVPEQATA 344 Query: 315 VSDRKVPLPRSLENTDKKEEQS-NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-L 372 + V P + +EE + NYE++ + +++RLS+A+ V+ ++ + Sbjct: 345 DDEGNVQAP----PVNVREESTRNYEMDRTVSYIRQELGRIKRLSVALAVDDMKVVDPQT 400 Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 G + + + L + +V A G ++ RGD++T+ + F Sbjct: 401 GEVSYEPWPEQELQRLTMLVRDAVGYSAARGDSVTVMNTAF 441 >gi|332669190|ref|YP_004452198.1| flagellar M-ring protein FliF [Cellulomonas fimi ATCC 484] gi|332338228|gb|AEE44811.1| flagellar M-ring protein FliF [Cellulomonas fimi ATCC 484] Length = 535 Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 120/419 (28%), Positives = 201/419 (47%), Gaps = 57/419 (13%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 RT LI +V+L + A +++ P L+ L +D + + L+ A + ++++D Sbjct: 24 RTLGLIGVAVLL---LGAFALSTYLSRPTMSPLFSGLSGADASAVVDELTAAGVQYQLAD 80 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS--FMQEITRVRALE 136 GS++ VP + + RI LAA GLP+++ GY L D++ +TS F Q+ T RALE Sbjct: 81 GGSTVLVPDAQLYDQRIRLAAAGLPTNADGGGYSLLDEMP---MTSSEFQQQTTYQRALE 137 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS---AEAIRH 193 GE+ART+ +I G+ +A V + +P+ F A PTASV IR P S +AI H Sbjct: 138 GELARTVGAIDGVESASVKLALPEESVFVSEKADPTASVFIR-TRPGTSLSLDQVQAIVH 196 Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE--IEMNINKALAA 251 LV+A + + DV V+D+TG++L+A ++ QA +E + ++ L Sbjct: 197 LVSAGIDGMTPTDVAVVDATGEVLSAVGTGTT---GGVAGQQASDYEARVAASVQALLDP 253 Query: 252 FLGVDNFRSAVVAELNMDTQQ----IREIVYDPDSKVERSIRLSKDAQRSETSQPESAVT 307 +G RSAV +D Q + E PD+ S S T++ + Sbjct: 254 LVG--PGRSAVTVTAEIDQSQTDRTVEEFTATPDTPPLAS---------STTTETYTGGA 302 Query: 308 VEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA---------TTHDNYKLERLS 358 + + +P N D + +YE T+ + TT ++R S Sbjct: 303 ASGAAGVLGPDNIQVP----NGDGTTGEGSYESTTEDVTNAVNKSTERTTQGPGAIQRQS 358 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 +AVV+++ ++A ID LA++ + ++AA GI+ RGDTI + ++ F Q Sbjct: 359 VAVVLDE--------KAA--APID--LAQLRETIAAAAGIDPERGDTIAVQAVPFDTTQ 405 >gi|83589623|ref|YP_429632.1| flagellar MS-ring protein [Moorella thermoacetica ATCC 39073] gi|83572537|gb|ABC19089.1| flagellar M-ring protein FliF [Moorella thermoacetica ATCC 39073] Length = 524 Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 103/378 (27%), Positives = 180/378 (47%), Gaps = 33/378 (8%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSS 105 P Y L+ ++ D ++ L E + +R++ +G++I VP + + R+ LA+ G+ Sbjct: 46 PQYAPLFTNMQQQDAAAVTAKLKEMKVPYRLTGDGTTIEVPKDQIYQLRLDLASAGV--L 103 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 ++ G+ELFD+ N G+T F + + RAL+ E+ RTI ++ + ARVH+V+P F Sbjct: 104 NNGQGFELFDQ-NKLGMTDFERNLDYQRALQEELRRTIVTLDEVEDARVHLVIPQPSVFL 162 Query: 166 KIGARPTASVMIRAINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLL----- 217 + P+A+V+++ + P E ++ L+AA+VP L + ++ V+D G +L Sbjct: 163 QQQQPPSAAVVLK-LKPLARLKPEQVKGIMELIAASVPGLKLENIRVIDMYGNVLSDGVA 221 Query: 218 -TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 +AN + I + + ++E + L LG + V A+LN D Q+I + Sbjct: 222 DSANAPLSQKQQTQMEIKRQFEKDLEQRLQSMLTQILGPGKAVAMVTADLNFDQQEINQT 281 Query: 277 VYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQS 336 + + RS + + S A T N P + + N + + Sbjct: 282 TWGKQGAL-RSEEIKTEQGTSNGGAGGVAGTAGNNGPGYP----AVNPANGNYNTSDTVH 336 Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL-AEINKIVSAA 395 NYE++ T ++ RLS AV VN G +++ L +I +IVSAA Sbjct: 337 NYELDKTDTHTIVAPGQVRRLSTAVAVN--------------GPVNAALNNQIQQIVSAA 382 Query: 396 TGINSRRGDTITITSMDF 413 G RGD IT+TS+ F Sbjct: 383 VGYQPARGDQITVTSLAF 400 >gi|22127339|ref|NP_670762.1| flagellar MS-ring protein [Yersinia pestis KIM 10] gi|45442785|ref|NP_994324.1| flagellar MS-ring protein [Yersinia pestis biovar Microtus str. 91001] gi|108809069|ref|YP_652985.1| flagellar MS-ring protein [Yersinia pestis Antiqua] gi|108810737|ref|YP_646504.1| flagellar MS-ring protein [Yersinia pestis Nepal516] gi|145597806|ref|YP_001161882.1| flagellar MS-ring protein [Yersinia pestis Pestoides F] gi|150260260|ref|ZP_01916988.1| lateral flagellar M-ring protein [Yersinia pestis CA88-4125] gi|162418149|ref|YP_001604857.1| flagellar MS-ring protein [Yersinia pestis Angola] gi|165924858|ref|ZP_02220690.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis str. F1991016] gi|165939096|ref|ZP_02227648.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis str. IP275] gi|166009035|ref|ZP_02229933.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str. E1979001] gi|166211925|ref|ZP_02237960.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str. B42003004] gi|167398942|ref|ZP_02304466.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419368|ref|ZP_02311121.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425084|ref|ZP_02316837.1| flagellar M-ring protein FliF [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167466352|ref|ZP_02331056.1| flagellar M-ring protein FliF [Yersinia pestis FV-1] gi|170022960|ref|YP_001719465.1| flagellar MS-ring protein [Yersinia pseudotuberculosis YPIII] gi|218927901|ref|YP_002345776.1| flagellar MS-ring protein [Yersinia pestis CO92] gi|229837397|ref|ZP_04457560.1| Flagellar M-ring protein fliF [Yersinia pestis Pestoides A] gi|229840610|ref|ZP_04460769.1| Flagellar M-ring protein fliF [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842839|ref|ZP_04462991.1| Flagellar M-ring protein fliF [Yersinia pestis biovar Orientalis str. India 195] gi|229900934|ref|ZP_04516058.1| Flagellar M-ring protein fliF [Yersinia pestis Nepal516] gi|270487684|ref|ZP_06204758.1| flagellar M-ring protein FliF [Yersinia pestis KIM D27] gi|294502778|ref|YP_003566840.1| flagellar M-ring protein [Yersinia pestis Z176003] gi|21960421|gb|AAM87013.1|AE013949_7 putative flagellar M ring protein [Yersinia pestis KIM 10] gi|45437651|gb|AAS63201.1| putative flagellar M-ring protein [Yersinia pestis biovar Microtus str. 91001] gi|108774385|gb|ABG16904.1| flagellar M-ring protein [Yersinia pestis Nepal516] gi|108780982|gb|ABG15040.1| putative flagellar M-ring protein [Yersinia pestis Antiqua] gi|115346512|emb|CAL19388.1| putative flagellar M-ring protein [Yersinia pestis CO92] gi|145209502|gb|ABP38909.1| flagellar M-ring protein [Yersinia pestis Pestoides F] gi|149289668|gb|EDM39745.1| lateral flagellar M-ring protein [Yersinia pestis CA88-4125] gi|162350964|gb|ABX84912.1| flagellar M-ring protein FliF [Yersinia pestis Angola] gi|165913052|gb|EDR31677.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis str. IP275] gi|165923058|gb|EDR40209.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis str. F1991016] gi|165992374|gb|EDR44675.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str. E1979001] gi|166206671|gb|EDR51151.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str. B42003004] gi|166963362|gb|EDR59383.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051446|gb|EDR62854.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055847|gb|EDR65628.1| flagellar M-ring protein FliF [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749494|gb|ACA67012.1| flagellar M-ring protein FliF [Yersinia pseudotuberculosis YPIII] gi|229682273|gb|EEO78365.1| Flagellar M-ring protein fliF [Yersinia pestis Nepal516] gi|229690106|gb|EEO82163.1| Flagellar M-ring protein fliF [Yersinia pestis biovar Orientalis str. India 195] gi|229696976|gb|EEO87023.1| Flagellar M-ring protein fliF [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705520|gb|EEO91530.1| Flagellar M-ring protein fliF [Yersinia pestis Pestoides A] gi|262360810|gb|ACY57531.1| flagellar M-ring protein [Yersinia pestis D106004] gi|262364755|gb|ACY61312.1| flagellar M-ring protein [Yersinia pestis D182038] gi|270336188|gb|EFA46965.1| flagellar M-ring protein FliF [Yersinia pestis KIM D27] gi|294353237|gb|ADE63578.1| flagellar M-ring protein [Yersinia pestis Z176003] gi|320016722|gb|ADW00294.1| Flagellar M-ring protein fliF [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 546 Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 118/425 (27%), Positives = 210/425 (49%), Gaps = 36/425 (8%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +LD++ Q G LG IL S + + + + + +S Y L+ E + + Sbjct: 1 MLDKIKQKLSPG-QLGENTKTILMSAVALLVTAAIIFSLWRSSQGYTALFGSQENIPITQ 59 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + L I +RI+ + + V + +GKARI LAA+G+ +++ GYEL DK + G Sbjct: 60 VVEVLEGEAIAYRINPDNGQVLVAENQLGKARILLAAKGI-TATLPIGYELMDKESMLGS 118 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRAIN 181 + F+Q + R+LEGE+A+++ ++S + ARVH+ M + SF A +ASV++R Sbjct: 119 SQFIQNVRYKRSLEGELAQSMMALSAVEYARVHLGMSEASSFAISNHADNSASVVLRLRY 178 Query: 182 PSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQ 235 + + AI LVA ++P + +V V+D G+LL+ AN + + Sbjct: 179 GQTLSTEQVGAIVQLVAGSIPGMKPANVRVVDQHGELLSQAYQANSEGVPSVKSGTELAH 238 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV--YDPDSKVERSIRLSKD 293 +Q E NI L + +G +N+R +V +L+M +I E Y PD R++ + Sbjct: 239 YLQSTTEKNIANLLNSVIGANNYRISVSTQLDMS--RIEETAEHYGPDP------RINDE 290 Query: 294 AQRSETSQPESAVTV-----EQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 + E S + A+ + Q +P + P S +K Y+ N + + Sbjct: 291 NIQQENSNDDMAMGIPGSLSNQPIPQSQAGQTPAAVSRSQAQRK---YIYDRNIRHV--R 345 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 + YKLE++++AVV+NK L + + +Q + E+ +++ A GI+ +RGD++TI Sbjct: 346 YPGYKLEKMTVAVVLNKS-LPVLEQWTPEQQE------ELKRLIEDAAGIDVKRGDSLTI 398 Query: 409 TSMDF 413 M F Sbjct: 399 NMMAF 403 >gi|116619481|ref|YP_821637.1| flagellar M-ring protein FliF [Candidatus Solibacter usitatus Ellin6076] gi|116222643|gb|ABJ81352.1| flagellar M-ring protein FliF [Candidatus Solibacter usitatus Ellin6076] Length = 570 Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 113/388 (29%), Positives = 184/388 (47%), Gaps = 41/388 (10%) Query: 48 YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 + L+ L D I L E+ +++R+ + G S+ VPS+ + R+ +A GLP S Sbjct: 39 FHPLFTGLSAEDAAGIVQKLKESGVEYRLPEGGGSVLVPSNKLADLRLTMAGIGLPKSG- 97 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 G+ELFDKVN G T F + I RALEGE+ RT+ +++ + ARVH+ P F + Sbjct: 98 RIGFELFDKVN-LGATEFTEHINYRRALEGELERTVMALAEVETARVHLTFPKDSVFLEA 156 Query: 168 GARPTASVMIRAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER 224 ASV++R I P + + AI HLV +AV L G V+VLD G LL + Sbjct: 157 QQPAKASVLVR-IRPGAKLAPQNVLAITHLVGSAVEGLSPGAVSVLDMNGNLLNRPKAPG 215 Query: 225 NILGK-----SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 G +L ++ E+ +N L+ LG + FR V E + + E +D Sbjct: 216 LQDGSEPSAATLDYRHQVETELLAKVNATLSPLLGPEKFRVGVSLECDFTGGEQSEETFD 275 Query: 280 PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD-----KKEE 334 P RS+ ++ +QR+E S T +P + +P P S T + E Sbjct: 276 P----ARSVMVT--SQRTEDS---VGGTTAAGVPGTAS-TLPRPTSRPATGANKTVRTTE 325 Query: 335 QSNYEINTKSIATTH-DNYKLERLSIAVVV--------NKGRLTEVLGRSADQGKIDSYL 385 +Y+ +++++ TH + + ++S+AV+V +K VL + + L Sbjct: 326 NISYQ-SSRTVKKTHLPSGVVRKMSLAVLVDQDVSWEKDKNSFKRVLVPPSPE-----KL 379 Query: 386 AEINKIVSAATGINSRRGDTITITSMDF 413 I +V+ TG + RGD + I ++ F Sbjct: 380 KVIRDLVAGITGFSQERGDQLVIETLPF 407 >gi|167043569|gb|ABZ08264.1| putative Secretory protein of YscJ/FliF family protein [uncultured marine microorganism HF4000_APKG2K17] Length = 560 Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 114/418 (27%), Positives = 195/418 (46%), Gaps = 18/418 (4%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 Q FF S + R IL+ ++L+ ++ + F N P + LY +E+ D I Sbjct: 38 QFQDFFGSLSLAKRITILVALGIVLIGMVSMI---FVANQPSWAPLYSNMELGDAAAIVE 94 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L E I + ++ G +I V V +AR+ LA + + S +LF S G T F Sbjct: 95 KLQENQIPYLLAPGGRTIMVEPHKVDQARLTLAKEKVTPGSGVGFLDLFS-TPSLGETEF 153 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV- 184 Q + A EGE+AR I +I+ + +A+V + +P F TA++ + + Sbjct: 154 QQGVKFRVAQEGELARLISTINVVKSAKVSLAIPQKTLFSDNQEETTAAIALNLTSSGAG 213 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK---SLSIVQAIQHEI 241 K E I HLVA+AV L +V + D +G LL+ + + GK + S ++E+ Sbjct: 214 RKQIETIIHLVASAVEGLSPRNVKITDQSGTLLSRGFSDTSASGKMNDNYSYKSRFENEL 273 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 E I + + +G D R V A L D + I+E + DPD S ++ ++ S Sbjct: 274 EAKIVRQIEEVVGKDRVRVNVSATLRFDRRTIKEELVDPDQTSVVSEQVVDESSTGTRSV 333 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 P V N+P + R+ ++ KK N+E + + I ++ RLS++V Sbjct: 334 PVGPAGVTTNLPEATGREAA---TVSEFSKKNSTRNFESSRREIVLESAVGEVVRLSVSV 390 Query: 362 VVNKGRLTEVLGRSA-DQGKIDSYLAEINK-----IVSAATGINSRRGDTITITSMDF 413 +++ R +++L S G+ ++ E K +V AA G N +RGD++ + +M F Sbjct: 391 LLDN-RRSQILDESGISLGRTNTPWTEAEKETIIGLVKAAMGFNEKRGDSVFVGNMPF 447 >gi|18642464|emb|CAD22875.1| basal-body M-ring protein [Erwinia chrysanthemi] Length = 357 Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 86/280 (30%), Positives = 152/280 (54%), Gaps = 14/280 (5%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 L++AS + I++ ++ + P Y LY L D I L + NI +R +++G++ Sbjct: 30 LLIASAATIAIVVALS--LWARGPDYRVLYTNLNERDGGSIVSELGKMNIPYRFTESGAA 87 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I +PS V + R+ LA QGLP + G+EL D+ FG++ F ++I RALEGE+ART Sbjct: 88 IMIPSDKVYETRLKLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQINYQRALEGELART 145 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAA 197 ++++ I ARVH+ +P F + P+A+V + RA++ S AI +LV++ Sbjct: 146 METLGPIQNARVHLAIPKPSLFVREQKSPSAAVTVTLQPGRALDDS---QISAITYLVSS 202 Query: 198 AVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVD 256 +V L VTV+D TGKLLT N+ R++ L ++ + I L +G Sbjct: 203 SVAGLPADKVTVVDQTGKLLTQNDSSGRDLNAAQLKYANEVESNYQRRIEAILTPVVGAG 262 Query: 257 NFRSAVVAELNMDTQQIREIVYDPD-SKVERSIRLSKDAQ 295 N + V A+++ +++ + Y P+ + + ++R +++Q Sbjct: 263 NVHAQVTAQIDFASREQTDEQYQPNQTPNQAAVRSQQNSQ 302 >gi|257871289|ref|ZP_05650942.1| flagellar M-ring protein fliF [Enterococcus gallinarum EG2] gi|257805453|gb|EEV34275.1| flagellar M-ring protein fliF [Enterococcus gallinarum EG2] Length = 540 Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 139/505 (27%), Positives = 252/505 (49%), Gaps = 53/505 (10%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSP-HYDNLYVKLEVSDVNRI 63 +QL ++ +SL +++++ SVI ++ AA +++N+ Y L+ L +D I Sbjct: 9 EQLKDRWQMQSSL--KKMIVVLSVI--SVLGITAAVYYLNTRIEYGILFTDLSDADAGTI 64 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG-LPSSSSNSGYELFDKVNSFGL 122 S L E I ++++DNG++I + V + RI+LA LP++S+ G+ELFD N Sbjct: 65 SKDLEEQQIAYKLADNGTTILIDKDQVDEYRINLAVDNKLPNTST--GFELFDDANMM-T 121 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T ++I RA+ GE+ R I+SI + +A+V +VMP+ F + PTAS+++ N Sbjct: 122 TDEDRKIMYQRAVTGELQRAIESIDAVKSAKVLLVMPEESVFSSEESAPTASIVLTLKNQ 181 Query: 183 SVY-KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG----KSLSIVQAI 237 + +S + I L + AV L +V V+DS G LT E E + L K ++I + Sbjct: 182 QISDESVQGIVTLTSGAVEKLKPENVKVVDSAGNTLTRTEDEASQLSGLNNKYIAIKDSY 241 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY-DPDSKVERSIRLSKDAQR 296 + +E + K L G D F+ ++ +LN D+ + +++ Y DP+ K E + A Sbjct: 242 EKTLEEKVAKLLTPIYGADKFQVSINLDLNFDSIERKKVTYDDPEIKSE----TVQAAGS 297 Query: 297 SETSQPESAVTVEQNMPHVS----DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 T Q TV+ N+ +V+ + RS+EN E++T++ T Sbjct: 298 QGTVQEAQTGTVDDNVSNVTGTDGEGNNSYSRSVEN----------ELDTETTTTITAPG 347 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 +ER++ ++V+N L++ ADQ AE+ +++++A G ++ RGD I I D Sbjct: 348 MIERMTSSIVIN-ANLSQ-----ADQ-------AELQQLIASAVGYDNDRGDQIAIQGFD 394 Query: 413 FLENQLFNSGTVQVSFMDILSRHF--ATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 F + ++ + Q + ++ + +I +V TL + L + + R +D Sbjct: 395 FAQAEVDPAADPQGNEPIAAAKGYLKYAIIGGIVL---TLFLVILMIVGVIRRRRKEDEL 451 Query: 471 KGEVGGKSILSPPPISSAVTTGLMP 495 + +V + + P SAV+TG P Sbjct: 452 EVDVTEEMVTFAQP--SAVSTGASP 474 >gi|257866378|ref|ZP_05646031.1| flagellar M-ring protein fliF [Enterococcus casseliflavus EC30] gi|257873106|ref|ZP_05652759.1| flagellar M-ring protein fliF [Enterococcus casseliflavus EC10] gi|257800336|gb|EEV29364.1| flagellar M-ring protein fliF [Enterococcus casseliflavus EC30] gi|257807270|gb|EEV36092.1| flagellar M-ring protein fliF [Enterococcus casseliflavus EC10] Length = 540 Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 123/426 (28%), Positives = 220/426 (51%), Gaps = 46/426 (10%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSP-HYDNLYVKLEVSDVNRI 63 +QL ++ +SL +++++ SVI ++ AA +++N+ Y L+ L +D I Sbjct: 9 EQLKDRWQMQSSL--KKMIVVLSVI--SVLGITAAVYYLNTRIEYGILFTDLSDADAGTI 64 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG-LPSSSSNSGYELFDKVNSFGL 122 S L E I ++++DNG++I + V + RI+LA LP++S+ G+ELFD N Sbjct: 65 SKDLEEQQIAYKLADNGTTILIDKDQVDEYRINLAVDNKLPNTST--GFELFDDANMM-T 121 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T ++I RA+ GE+ R I+SI + +A+V +VMP+ F + PTAS+++ N Sbjct: 122 TDEDRKIMYQRAVTGELQRAIESIDAVKSAKVLLVMPEESVFSSEESAPTASIVLTLKNQ 181 Query: 183 SVY-KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG----KSLSIVQAI 237 + +S + I L + AV L +V V+DS G LT E E + L K ++I + Sbjct: 182 QISDESVQGIVTLTSGAVEKLKPENVKVVDSAGNTLTRTEDEASQLSGLNNKYIAIKDSY 241 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY-DPDSKVERSIRLSKDAQR 296 + +E + K L G D F+ ++ +LN D+ + +++ Y DP+ K E + A Sbjct: 242 EKTLEEKVAKLLTPIYGADKFQVSINLDLNFDSIERKKVTYDDPEIKSE----TVQAAGS 297 Query: 297 SETSQPESAVTVEQNMPHVS----DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 T Q TV+ N+ +V+ + RS+EN E++T++ T Sbjct: 298 QGTVQEAQTGTVDDNVSNVTGTDGEENNSYSRSVEN----------ELDTETTTTITAPG 347 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 +ER++ ++V+N L++ ADQ AE+ +++++A G ++ RGD I I D Sbjct: 348 MIERMTSSIVIN-ANLSQ-----ADQ-------AELQQLIASAVGYDNDRGDQIAIQGFD 394 Query: 413 FLENQL 418 F + ++ Sbjct: 395 FAQAEV 400 >gi|325567531|ref|ZP_08144198.1| flagellar M-ring protein fliF [Enterococcus casseliflavus ATCC 12755] gi|325158964|gb|EGC71110.1| flagellar M-ring protein fliF [Enterococcus casseliflavus ATCC 12755] Length = 541 Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 129/475 (27%), Positives = 240/475 (50%), Gaps = 48/475 (10%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSP-HYDNLYVKLEVSDVNRI 63 +QL ++ +SL +++++ SVI ++ AA +++N+ Y L+ L +D I Sbjct: 10 EQLKDRWQMQSSL--KKMIVVLSVI--SVLGITAAVYYLNTRIEYGILFTDLSDADAGTI 65 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG-LPSSSSNSGYELFDKVNSFGL 122 S L E I ++++DNG++I + V + RI+LA LP++S+ G+ELFD N Sbjct: 66 SKDLDEQQIAYKLADNGTTILIDKDQVDEYRINLAVDNKLPNTST--GFELFDDANMM-T 122 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T ++I RA+ GE+ R I+SI + +A+V +VMP+ F + PTAS+++ N Sbjct: 123 TDEDRKIMYQRAVTGELQRAIESIDAVKSAKVLLVMPEESVFSSEESAPTASIVLSLKNQ 182 Query: 183 SVY-KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG----KSLSIVQAI 237 + +S + I L + AV L +V V+DS G LT E E + L K ++I + Sbjct: 183 QISDESVQGIVTLTSGAVEKLKPENVKVVDSAGNTLTRTEDEASQLSGLNNKYIAIKDSY 242 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY-DPDSKVERSIRLSKDAQR 296 + +E + K L G D F+ ++ +LN D+ + +++ Y DP+ K E + A Sbjct: 243 EKTLEEKVAKLLTPIYGADKFQVSINLDLNFDSIERKKVTYDDPEIKSE----TVQAAGS 298 Query: 297 SETSQPESAVTVEQNMPHVS----DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 T Q TV+ N+ +V+ + RS+EN E++T++ T Sbjct: 299 QGTVQEAQTGTVDDNVSNVTGTDGEGNNSYSRSVEN----------ELDTETTTTITAPG 348 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 +ER++ ++V+N L++ ADQ AE+ +++++A G ++ RGD I I D Sbjct: 349 MIERMTSSIVIN-ANLSQ-----ADQ-------AELQQLIASAVGYDNDRGDQIAIQGFD 395 Query: 413 FLENQLFNSGTVQVSFMDILSRHFA--TVINALVFLVGTLLVTFLGLHALRRLHN 465 F + ++ + Q + ++ + +I +V + +++ +G+ RR + Sbjct: 396 FAQAEVDPAADPQGNEQIAAAKGYVKYAIIGGIVLTLFLVILMIVGVIRRRRKED 450 >gi|153947902|ref|YP_001399623.1| flagellar MS-ring protein [Yersinia pseudotuberculosis IP 31758] gi|152959397|gb|ABS46858.1| flagellar M-ring protein FliF [Yersinia pseudotuberculosis IP 31758] Length = 546 Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 119/425 (28%), Positives = 212/425 (49%), Gaps = 36/425 (8%) Query: 3 ILDQLLQFFKSGTSLGRTR-ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 +LD++ Q G T+ IL+ A+ +LV + + + +S Y L+ E V Sbjct: 1 MLDKIKQKLSPGQLGENTKTILMSAAALLVTAAIIFS--LWRSSQGYTALFGSQENIPVT 58 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 ++ L I +RI+ + + V + +GKARI LAA+G+ +++ GYEL DK + G Sbjct: 59 QVVEVLEGEAIAYRINPDNGQVLVAENQLGKARILLAAKGI-TATLPIGYELMDKESMLG 117 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARP--TASVMIRA 179 + F+Q + R+LEGE+A+++ ++S + ARVH+ M + SF I R +ASV++R Sbjct: 118 SSQFIQNVRYKRSLEGELAQSMMALSAVEYARVHLGMSEASSF-AISNRSDNSASVVLRL 176 Query: 180 INPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSI 233 + + AI LVA ++P + +V V+D G+LL+ AN + + Sbjct: 177 RYGQTLSTEQVGAIVQLVAGSIPGMKPANVRVVDQHGELLSQAYQANSEGVPSVKSGTEL 236 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293 +Q E NI L + +G +N+R +V +L+M + Y PD R++ + Sbjct: 237 AHYLQSTTEKNIANLLNSVIGANNYRISVSTQLDMSRIEETAERYGPDP------RINDE 290 Query: 294 AQRSETSQPESAVTV-----EQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 + E S + A+ + Q +P + P S +K Y+ N + + Sbjct: 291 NIQQENSNDDMAMGIPGSLSNQPIPQSQAGQTPAAVSRSQAQRK---YIYDRNIRHV--R 345 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 + YKLE++++AVV+NK L + + +Q + E+ +++ A GI+ +RGD++TI Sbjct: 346 YPGYKLEKMTVAVVLNKS-LPVLEQWTPEQQE------ELKRLIEDAAGIDVKRGDSLTI 398 Query: 409 TSMDF 413 M F Sbjct: 399 NVMAF 403 >gi|257875991|ref|ZP_05655644.1| flagellar M-ring protein fliF [Enterococcus casseliflavus EC20] gi|257810157|gb|EEV38977.1| flagellar M-ring protein fliF [Enterococcus casseliflavus EC20] Length = 540 Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 123/426 (28%), Positives = 220/426 (51%), Gaps = 46/426 (10%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSP-HYDNLYVKLEVSDVNRI 63 +QL ++ +SL +++++ SVI ++ AA +++N+ Y L+ L +D I Sbjct: 9 EQLKDRWQMQSSL--KKMIVVLSVI--SVLGITAAVYYLNTRIEYGILFTDLSDADAGTI 64 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG-LPSSSSNSGYELFDKVNSFGL 122 S L E I ++++DNG++I + V + RI+LA LP++S+ G+ELFD N Sbjct: 65 SKDLEEQQIAYKLADNGTTILIDKDQVDEYRINLAVDNKLPNTST--GFELFDDANMM-T 121 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T ++I RA+ GE+ R I+SI + +A+V +VMP+ F + PTAS+++ N Sbjct: 122 TDEDRKIMYQRAVTGELQRAIESIDAVKSAKVLLVMPEESVFSSEESAPTASIVLTLKNQ 181 Query: 183 SVY-KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG----KSLSIVQAI 237 + +S + I L + AV L +V V+DS G LT E E + L K ++I + Sbjct: 182 QISDESVQGIVTLTSGAVEKLKPENVKVVDSAGNTLTRTEDEASQLSGLNNKYIAIKDSY 241 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY-DPDSKVERSIRLSKDAQR 296 + +E + K L G D F+ ++ +LN D+ + +++ Y DP+ K E + A Sbjct: 242 EKTLEEKVAKLLTPIYGADKFQVSINLDLNFDSIERKKVTYDDPEIKSE----TVQAAGS 297 Query: 297 SETSQPESAVTVEQNMPHVS----DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 T Q TV+ N+ +V+ + RS+EN E++T++ T Sbjct: 298 QGTVQEAQTGTVDDNVSNVTGTDGEGNNSYSRSVEN----------ELDTETTTTITAPG 347 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 +ER++ ++V+N L++ ADQ AE+ +++++A G ++ RGD I I D Sbjct: 348 MIERMTSSIVIN-ANLSQ-----ADQ-------AELQQLIASAVGYDNDRGDQIAIQGFD 394 Query: 413 FLENQL 418 F + ++ Sbjct: 395 FAQAEV 400 >gi|332284042|ref|YP_004415953.1| flagellar MS-ring protein [Pusillimonas sp. T7-7] gi|330427995|gb|AEC19329.1| flagellar MS-ring protein [Pusillimonas sp. T7-7] Length = 563 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 120/417 (28%), Positives = 190/417 (45%), Gaps = 53/417 (12%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ LE D I AL++ NI +++S G++I VP + V + R+ LA Q Sbjct: 41 MWARTPDYGVLFSNLEDRDGGAIVAALTQQNIPYQLSSTGNAILVPRNKVHEVRLQLAQQ 100 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP +G+EL D+ FG + F ++I RALEGE+ +IQS+ + +ARVH+ +P Sbjct: 101 GLPRGGE-TGFELLDQTR-FGASQFTEQINYQRALEGELVSSIQSMHAVQSARVHLAIPR 158 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + PTASV++ A+ AI LV+++VP+L V+V+D G+LLT Sbjct: 159 ESLFVRDRQPPTASVLLTLYPGRSLSDAQVAAITWLVSSSVPHLSADKVSVVDQNGRLLT 218 Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 E G +++ I+ I + +G N R+ V A+++ ++ VY Sbjct: 219 NLNGEAGADGTRRNLINDIEQRTVQRILTLITPLVGPGNVRAQVSADVDFAQREQTSEVY 278 Query: 279 ----DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV----PLPRSL---- 326 P RS + S Q + PE N P ++ P P + Sbjct: 279 RPNQKPGEAAVRSEQTSSSVQHN-VLPPEGIPGALTNQPPLNAVAPIVTPPAPGAANPND 337 Query: 327 -----------------------ENTDKKEEQS------NYEINTKSIATTHDNY-KLER 356 EN + S NYE++ +SI D L R Sbjct: 338 PNAAPDAAPDAAQNPNGNVLAGGENLQQGTGNSRSDATINYEVD-RSITHVKDPVGSLRR 396 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 LS AVVVN +V G++ + LA++N +V A G + RGDT+++ + F Sbjct: 397 LSAAVVVN---YRDVDGKATP--LPEEELAKLNDLVKQAMGYSPARGDTLSVVNSQF 448 >gi|114800445|ref|YP_758973.1| flagellar MS-ring protein [Hyphomonas neptunium ATCC 15444] gi|114740619|gb|ABI78744.1| flagellar M-ring protein FliF [Hyphomonas neptunium ATCC 15444] Length = 528 Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 113/368 (30%), Positives = 177/368 (48%), Gaps = 20/368 (5%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110 LY LE + I L ++ + I G +I VP R LA QGLP S G Sbjct: 44 LYSGLEPAHAGDIIKELEQSGTPYEI--KGEAIFVPQGKRDAIRFTLAQQGLPRPSVQ-G 100 Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170 YEL D+VN F +TS M RA EGE+ RTI +I G+ +ARVHI F + Sbjct: 101 YELLDEVNGFSVTSEMYNAAYWRAKEGELTRTILAIPGVSSARVHIGANLRSGFSRSQPN 160 Query: 171 PTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS 230 TASV + AEAI+++VA AV L DV V+D +L + R + Sbjct: 161 QTASVTLTTARDMTAGQAEAIQYMVALAVAGLRAEDVAVIDPVKGILAGPKANRT---EE 217 Query: 231 LSIVQAIQHE-IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 ++ A Q +E I L +GV N R + +++ Q + +DP+S+V R+ R Sbjct: 218 PAVAAATQASLLEQKILSLLEPRVGVGNARVSATVDVSRQRQVTSAVTFDPNSRVIRN-R 276 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 + D+ + +TV N+P + + +N+ E +YEIN Sbjct: 277 TTNDSTGASAGA-GGGMTVASNLPQGGEGGGGNTSTNKNS---TETVSYEINETRTEVET 332 Query: 350 DNYKLERLSIAVVVNKGRLTEVLG---RSADQGKIDSYL-AEINKIVSAATGINSRRGDT 405 +++R++IAV++N+ + LG +AD + + A+ +++++A GI++ RGDT Sbjct: 333 LPGEVQRITIAVLLNE----QALGIDPAAADVATLTQQMAADFEQLIASAAGIDTARGDT 388 Query: 406 ITITSMDF 413 I+I M F Sbjct: 389 ISIELMPF 396 >gi|322379554|ref|ZP_08053893.1| flagellar MS-ring protein [Helicobacter suis HS1] gi|322379773|ref|ZP_08054077.1| flagellar MS-ring protein [Helicobacter suis HS5] gi|321147801|gb|EFX42397.1| flagellar MS-ring protein [Helicobacter suis HS5] gi|321148014|gb|EFX42575.1| flagellar MS-ring protein [Helicobacter suis HS1] Length = 567 Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 127/441 (28%), Positives = 219/441 (49%), Gaps = 52/441 (11%) Query: 2 AILDQLLQFFKSGTSLGRT-RILILASVILVPIMLFMAARFFVNSPHYDN--------LY 52 ++L Q++ FF + L R +I I+ +V L I+ F+ F + P +D L+ Sbjct: 5 SLLQQVISFF---SKLNRAQKITIVTAVTL--IVAFLV--FLLIYPTHDKGDLSGYGVLF 57 Query: 53 VKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYE 112 ++ SD I L + +I ++I +I +P + + RI LA+QG+P +S GYE Sbjct: 58 EGMDNSDNALILQHLQQKHIPYKIPKE-DTILIPRDRIYEERISLASQGIPKTSK-VGYE 115 Query: 113 LFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPT 172 +FD + FG T F Q I +RA+EGE++RTI+S++ I A VHI +P F PT Sbjct: 116 IFD-IKDFGATDFDQNIKYIRAIEGELSRTIESLNPIEKANVHIAIPKDSVFVSHEIPPT 174 Query: 173 ASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNI 226 ASVM++ I P++ + I++L+AA+VP L + +V +++ G+ L N+ R + Sbjct: 175 ASVMLK-IKPNMRLLPRQIIGIKNLIAASVPKLTVENVKLVNENGEPLGENDQLDTTREL 233 Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVE 285 L Q ++ +E I LA + G D + V AE + ++ + +DP++ V Sbjct: 234 AQAQLRYKQNFENMLESKIANILAPIVGGRDKVVARVNAEFDFSQKKSTKETFDPNNVV- 292 Query: 286 RSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLP-----RSLENTDKKEEQSNYEI 340 R + + + P+ V +P V P+ + E +K +NYE+ Sbjct: 293 ---RSEQTMEEKKEGLPKKQVG---GVPGVVSNIGPVQGIANDQLKEKYEKSTNTTNYEV 346 Query: 341 NTKSIATTHDNYK-LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLA-------EINKIV 392 K ++ + L RL+ AVVV+ G+ +V + + Y+A +IN +V Sbjct: 347 G-KMVSEIKGEFGVLTRLNAAVVVD-GKYQKVNKNGTESME---YVALSAAEMDQINALV 401 Query: 393 SAATGINSRRGDTITITSMDF 413 A G N RGD +T+++ +F Sbjct: 402 KQAIGYNQNRGDAVTVSNFEF 422 >gi|50954404|ref|YP_061692.1| flagellar M-ring protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950886|gb|AAT88587.1| flagellar M-ring protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 441 Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 121/418 (28%), Positives = 198/418 (47%), Gaps = 46/418 (11%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 +G S + + ILA +LV + +++ P LY L +D I+ L N+ Sbjct: 17 AGFSFAQKTVSILA--VLVLALGVTGLSLWMSQPQRVPLYTGLSAADAEAITQQLKTDNV 74 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 ++++D GSSI VP V R+ AA GLP+++ N GY L D + S + F Q +T Sbjct: 75 SYQLTDGGSSILVPQESVYTERLKSAAAGLPTAA-NKGYSLLDNM-SITTSEFQQSVTYQ 132 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA--EA 190 RA+EGE+A TI+++ G+ ++ V + +P+ F A PTASV I + +A Sbjct: 133 RAMEGELANTIEAMDGVKSSSVKLAIPEKTVFTDQAADPTASVFIATASGHTLTRGQVQA 192 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI----VQAIQHEIEMNIN 246 I HL +AA+ + DV+V+DS+G +L+A +G S S+ +Q ++ + Sbjct: 193 IVHLTSAAIVGMKPADVSVIDSSGAVLSA-------IGGSASVSDGTADTLQASVQSAVQ 245 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET---SQPE 303 L LG N S V A N Q V ++ ++ ET S P Sbjct: 246 GMLDKVLGSGN--STVTA--NASLSQATGTKTTQTYTVPTGAPVTSSSEEKETYTGSGPA 301 Query: 304 SAVTVEQ-------NMPHVSDRKVPLPRSLENTD-KKEEQSNYEINTKSIATTHDNYKLE 355 +A + Q N + R V S ++ K+ N T+SI L+ Sbjct: 302 AAGVLGQPSLDVATNGTRNTTRAVGGNGSYQSAKLVKDNALNSVTETQSIPAGL----LQ 357 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 RL+++VVVNK + E G + A+++++VSAA G+ + RGDT+++ + F Sbjct: 358 RLTVSVVVNK-TVAEAAGLAT---------AQLSQMVSAAAGVETTRGDTVSVEFVGF 405 >gi|126176167|ref|YP_001052316.1| flagellar MS-ring protein [Shewanella baltica OS155] gi|304412519|ref|ZP_07394125.1| flagellar M-ring protein FliF [Shewanella baltica OS183] gi|307307178|ref|ZP_07586916.1| flagellar M-ring protein FliF [Shewanella baltica BA175] gi|125999372|gb|ABN63447.1| flagellar M-ring protein FliF [Shewanella baltica OS155] gi|304349161|gb|EFM13573.1| flagellar M-ring protein FliF [Shewanella baltica OS183] gi|306910417|gb|EFN40848.1| flagellar M-ring protein FliF [Shewanella baltica BA175] Length = 558 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 121/441 (27%), Positives = 201/441 (45%), Gaps = 50/441 (11%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + + Y LY E D +++ L ID+R+ N ++ V VG AR+ LAA+ Sbjct: 57 LWTATAGYRPLYGSQENVDTSQVLNVLDAEGIDYRLDANSGAVLVAEEQVGNARMILAAK 116 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 G+ + SG E D + G + FM++ +LEGE+ARTI S+ + AARVH+ +P Sbjct: 117 GV-KAKVPSGMEALDNT-ALGTSQFMEQAKYRNSLEGELARTIMSLKLVRAARVHLAIPK 174 Query: 161 MGSF-RKIGARPTASVMIRAINPSVYKS---AEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 F R+ PTASVM++ ++P+ S EAI +LVA +V L ++ V+D G+ Sbjct: 175 QTLFIRQEPELPTASVMLQ-LDPNTRLSESQVEAIVNLVAGSVTGLTASNIKVVDQDGRY 233 Query: 217 LTAN-------EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 L+ N RN K L + +++ + N + L LG +NF+ V A++N + Sbjct: 234 LSENISGNQDLSQSRN---KQLQYTRELENSLVANASSMLEPVLGQENFQVRVTAKVNFN 290 Query: 270 TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT 329 + + DP + V + TS +S+ ++ +P K P Sbjct: 291 QVEETKESLDPQNVVT----------QERTSVDDSSNSIAAGIPGALSNKPPQAGKAAAD 340 Query: 330 D-----KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI--D 382 D K+EE Y++ + +LE LS++V++N + QG + Sbjct: 341 DKTRNLKQEESRQYDVGRSVRHVRYQQMQLENLSVSVLINS---------ATSQGAFNDE 391 Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINA 442 + LA+ +V A G ++ RGD+ TI + +F + TV F Sbjct: 392 AQLAKFGNMVKDAIGFSAARGDSFTINAFEF-------TPTVTAEFTPSPWWQSENYQAY 444 Query: 443 LVFLVGTLLVTFLGLHALRRL 463 L +++G +L L L LR L Sbjct: 445 LRYIIGGILGFGLILFVLRPL 465 >gi|302389658|ref|YP_003825479.1| flagellar M-ring protein FliF [Thermosediminibacter oceani DSM 16646] gi|302200286|gb|ADL07856.1| flagellar M-ring protein FliF [Thermosediminibacter oceani DSM 16646] Length = 517 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 119/447 (26%), Positives = 208/447 (46%), Gaps = 48/447 (10%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 Q+ +F+ S + + +++ A ++++ L +F++ P Y L+ L + D I Sbjct: 10 QVSEFWNSRNKVQKISLILGALLVILTAGLLG---YFISRPSYSPLFTNLSMQDAGEIVK 66 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L + I ++I+D G +I V S V K R++LA +GLP ++F+K G T + Sbjct: 67 RLEDMKIPYKIADGGKTILVESKDVYKTRLNLAQEGLPKGGVLGFSDIFNKT-KLGTTDW 125 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR--PTASVMIRAINPS 183 +++ +AL+GE+ RTI+ + + +ARVHIV P F + A+ P+A+V ++ + P Sbjct: 126 ERQLQYTQALQGELTRTIEEMEQVESARVHIVQPRESLFIEPNAQKEPSAAVFLK-LKPG 184 Query: 184 VYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKL-----LTANEMERNILGKSLSIVQ 235 V + E IR +LVA +V L ++T++D G++ L+ + + + L I Sbjct: 185 VEIAEEEIRGIINLVAHSVEGLKPENITIVDEFGRVLSNIPLSEEQNTKEEINSQLVIQN 244 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK-----VERSIRL 290 Q +++ N+ L G N V A+LN D + + ++ P S + RS++ Sbjct: 245 NFQKQLQANVQSLLEQIFGPGNVAVRVNAQLNFDKKTVESRLFTPVSSETGDGILRSVQE 304 Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 ++ S P N+P P N K E NYE+N T Sbjct: 305 LREHFSGTGSVPTGNPGTGTNIPGYQQ---PNTNGTSNYQKTEVIRNYEMNESKENVTVA 361 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 +++L+++VVVN R + + D +I +V A G + +R D IT+ Sbjct: 362 PGTVKKLTVSVVVN---------RDLNDEEKD----KIATLVGNAIGYDIQR-DQITVEG 407 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFA 437 M F NQL DILS+ A Sbjct: 408 MTF-NNQL----------ADILSKQLA 423 >gi|149191163|ref|ZP_01869421.1| flagellar M-ring protein [Vibrio shilonii AK1] gi|148835001|gb|EDL51980.1| flagellar M-ring protein [Vibrio shilonii AK1] Length = 557 Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 124/438 (28%), Positives = 202/438 (46%), Gaps = 34/438 (7%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92 IML+ +A F LY K D +++ L E +I +++S + I VP V K Sbjct: 56 IMLWTSAERF------RPLYSKSANFDSSQVLQLLDEESIRYQLSQDDGQILVPEGDVAK 109 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 R+ LA++GL SG++ D S G + FM+ ALEGE+AR+I ++S + A Sbjct: 110 IRMILASKGL-KEQLPSGFDSLDSSKSLGESQFMENARYRHALEGELARSITTMSAVSLA 168 Query: 153 RVHIVMPDMGSF-RKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTV 209 RVH+ +P F R+ G +P ASV++ IN K E++ +LV+ AV L V V Sbjct: 169 RVHLAIPKESLFMREDGEQPRASVIVHIINGMDLKPTQVESVINLVSGAVIGLKSEHVRV 228 Query: 210 LDSTGKLLTANEMERNI---LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAEL 266 +D G+LL+ + +I GK + ++ + L LG NFR + +++ Sbjct: 229 VDQHGRLLSNDATVGDITVTTGKQSDYKRNLERTLVAQATDMLTPILGASNFRVQIASDI 288 Query: 267 NMD-TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRS 325 + ++ EI DP V R L D +E+S N P V+D + P P Sbjct: 289 DFSRIEETEEIYADP---VVRKETLLNDV--NESSMALGIPGALSNTPPVTDGE-PQPEP 342 Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385 ++ E +Y ++ K H L+ LS+++VVN +A+Q L Sbjct: 343 NAKVNRSETSRDYAVSGKVRHIQHQQGVLQNLSVSIVVND-------LANANQTWTPEEL 395 Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445 + +V +A G + RGDTI IT F+ + + V F + ++ L + Sbjct: 396 TNVENVVRSAIGFSETRGDTIHITHFPFVVASIPDQAPV-AWFEN------TNIMQPLKY 448 Query: 446 LVGTLLVTFLGLHALRRL 463 L+G +L + + LR L Sbjct: 449 LLGVMLSGLMIMVVLRPL 466 >gi|257484920|ref|ZP_05638961.1| flagellar MS-ring protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 447 Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 110/399 (27%), Positives = 177/399 (44%), Gaps = 46/399 (11%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y LY L D +I L Sbjct: 24 LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + ANI++ + N ++ V S V +ARI LA G+ + +N G+E+ DK G + FM+ Sbjct: 84 TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINP 182 R LEGE+ARTI +++ + ARVH+ +P F + +P+ASV++ R++ P Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHE 240 S AI +LVA +VP L +TV+D G LL+ A E + GK + ++ Sbjct: 204 S---QVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGM 260 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 + + L LG D +++ V A ++ + ++PD RS + S + QRS +S Sbjct: 261 LTQRVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQ-SVNEQRSSSS 319 Query: 301 -----------QPESAVTVEQNM----------------------PHVSDRKVPLPRSLE 327 QP T QN + D P Sbjct: 320 STGGVPGALSNQPPGPATAPQNATAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAP 379 Query: 328 NTDKKEEQS--NYEINTKSIATTHDNYKLERLSIAVVVN 364 K QS N+E++ T +L RLS+AVVV+ Sbjct: 380 YPADKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVD 418 >gi|269792946|ref|YP_003317850.1| flagellar M-ring protein FliF [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100581|gb|ACZ19568.1| flagellar M-ring protein FliF [Thermanaerovibrio acidaminovorans DSM 6589] Length = 524 Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 119/392 (30%), Positives = 187/392 (47%), Gaps = 39/392 (9%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 F YD L+ L + D + L E I F++ ++I VP V +ARI LA Sbjct: 42 FVAGRTAYDPLFSGLTMEDQGAVVEYLKEQKIPFKVDPGANAILVPRRNVYEARIALAQM 101 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 G+P G+E+FD+ G+ F Q + RALEGE++RTI I + ARV IV+P+ Sbjct: 102 GIPKGGV-VGFEIFDQ-PKMGMNDFQQRVAYARALEGELSRTISKIDAVEEARVSIVIPE 159 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLL 217 F + TASV++R + P E +R +LVA +V L DVTV+D++GK+L Sbjct: 160 QRLFLEEQRPSTASVLVR-LKPGREIGQEQVRGIVNLVARSVEGLRPEDVTVVDTSGKVL 218 Query: 218 TANEMERNIL------GKSLSIVQ-----AIQHEIEMNINKALAAFLGVDNFRSAVVAEL 266 + + N++ G+++S VQ + E+E + L G V EL Sbjct: 219 SDLIHDDNLIYMSGSDGRAVSSVQRELERQQEQELERKVRVMLEKVFGPGKAVVRVRVEL 278 Query: 267 NMDTQQI--REIVYDPDSK-VERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLP 323 + D + RE + PD K V RS + +++ + P A N+P V P Sbjct: 279 DFDKKSTSRREFIPGPDGKGVIRSQQNVEESYTGPGTPPGGAPGTTTNIPGY----VVNP 334 Query: 324 RSLENTD--KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI 381 N + K + +NY+I T+ T ++RLS +V+V+ G+L E ++ Sbjct: 335 NQGGNVEYNKTDTVTNYDITTQESQTQSTPGAIKRLSASVIVD-GQLDEAASQN------ 387 Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 + + V+AA GI+ RGD + I +M F Sbjct: 388 ------LRQTVAAAIGIDEARGDRLVIQAMKF 413 >gi|330889061|gb|EGH21722.1| flagellar MS-ring protein [Pseudomonas syringae pv. mori str. 301020] Length = 428 Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 110/399 (27%), Positives = 177/399 (44%), Gaps = 46/399 (11%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y LY L D +I L Sbjct: 24 LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + ANI++ + N ++ V S V +ARI LA G+ + +N G+E+ DK G + FM+ Sbjct: 84 TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINP 182 R LEGE+ARTI +++ + ARVH+ +P F + +P+ASV++ R++ P Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHE 240 S AI +LVA +VP L +TV+D G LL+ A E + GK + ++ Sbjct: 204 S---QVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGM 260 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 + + L LG D +++ V A ++ + ++PD RS + S + QRS +S Sbjct: 261 LTQRVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQ-SVNEQRSSSS 319 Query: 301 -----------QPESAVTVEQNM----------------------PHVSDRKVPLPRSLE 327 QP T QN + D P Sbjct: 320 STGGVPGALSNQPPGPATAPQNATAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAP 379 Query: 328 NTDKKEEQS--NYEINTKSIATTHDNYKLERLSIAVVVN 364 K QS N+E++ T +L RLS+AVVV+ Sbjct: 380 YPADKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVD 418 >gi|126665015|ref|ZP_01735998.1| flagellar M-ring protein [Marinobacter sp. ELB17] gi|126630385|gb|EBA01000.1| flagellar M-ring protein [Marinobacter sp. ELB17] Length = 569 Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 99/408 (24%), Positives = 194/408 (47%), Gaps = 28/408 (6%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92 + L +A + P+Y + L + ++ L + ID+++ ++ V + V Sbjct: 52 VALGVAVVLWAQEPNYQPVLGDLSSYNPQDVTSILDSSGIDYKMDPRTGALLVVADQVYN 111 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 AR+ LAA+G+ + G+EL D+ G + +M+ I+ R LEGE+ARTI S+ G+ +A Sbjct: 112 ARLRLAAEGV-TDQKTLGFELLDQDRGLGTSQYMETISYRRGLEGELARTIASMRGVRSA 170 Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAI---NPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209 RVH+ +P+ F + P+ASV + P A AI +LVA +VP + VTV Sbjct: 171 RVHLAIPERSVFIRDAREPSASVFLEVFAGRRPEQEYIA-AIVNLVAGSVPMMTQSGVTV 229 Query: 210 LDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELN 267 +D G LLT + E + + ++ + ++ ++ +G +R+ V A+L+ Sbjct: 230 VDQNGNLLTGADAETDTDRMSDQYDYTDRVEERLSRRVSSLISPIVGEGRYRTEVSADLD 289 Query: 268 MDTQQIREIVYDPDSKVERSIRLSKDAQRSE----------TSQPESAVTVEQNMPHVSD 317 + + E +++P+ + RS R + + + ++QP + TV Q ++ Sbjct: 290 FSSVERAEELFNPEQQAVRSERQLTERRSAGDGPIGIPGALSNQPPANATVPQQANAGAN 349 Query: 318 RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSAD 377 P + E NYE++ + +++RL++A+ V+ ++ +AD Sbjct: 350 ADGAEPAPAPVDVRSESTRNYEMDRTVSYVRQELGRIKRLTVALAVDDIKVV-----NAD 404 Query: 378 QGKI------DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 G + + L ++ +V A G ++ RGD++T+ + F Q+ Sbjct: 405 TGAVTYEPWPEQELQRLSMLVRDAVGYSAARGDSVTVMNTAFAPEQVL 452 >gi|332162913|ref|YP_004299490.1| flagellar M-ring protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667143|gb|ADZ43787.1| Flagellar M-ring protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 541 Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 142/572 (24%), Positives = 265/572 (46%), Gaps = 68/572 (11%) Query: 3 ILDQLLQFFKSGTSLGRTR--ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 +LD++ Q + LG+ + IL+ A+ ILV + + + +S Y L+ E V Sbjct: 1 MLDKIKQQLPA-IRLGKNQKSILMGAAAILVTGAIIFS--LWRSSQGYTALFGSQEHIPV 57 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 ++ L I +RI+ + I V + +G+ARI LAA+G+ +++ +GYEL D+ Sbjct: 58 TQVVEVLDGEAIAYRINPDNGQILVAENQLGRARILLAAKGI-TATLPTGYELMDQETML 116 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR--PTASVMIR 178 G + F+Q + R+LEGE+A++I +++ + ARVH+ M + SF I R +ASV++R Sbjct: 117 GSSQFIQNVRYKRSLEGELAQSIMALTSVDYARVHLGMSEASSF-AISNRSESSASVILR 175 Query: 179 AINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLS 232 K+ + AI LVA ++P + +V V+D G+LL+ AN + Sbjct: 176 LKYGQTLKADQVGAIVQLVAGSIPGMKAANVRVVDQHGELLSEAYQANGKGMTNVKNGAE 235 Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI---- 288 + +Q E +I L++ +G +N+R +V +L++ S+VE ++ Sbjct: 236 LAHYLQSTTEKSIANLLSSVVGANNYRISVATQLDL-------------SRVEETLERYG 282 Query: 289 ---RLSKDAQRSETSQPESAVTVE---QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINT 342 R+S + + E + A+ + N P + P ++ + + Q Y + Sbjct: 283 AEPRVSDENIQQENGNEDMAMGIPGSLSNQPAAQPKNANAPAAM---SRSQAQRKYAYDR 339 Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402 H +KLE++++AV++NK A + L E+ +++ A GI+++R Sbjct: 340 DIRHVRHPGFKLEKMTVAVILNK-------SAPALEKWTPEQLNELKRLIEDAAGIDAKR 392 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 GD++T+ + F L + + + D + + + + + LL L A R Sbjct: 393 GDSLTLNMLAFTVPTLIDEPVI-AWWQDATTFRWVEIAGIGLLSLLFLLFGVRPLMA--R 449 Query: 463 LHNIDD-----AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS 517 L DD A + G ++ + SSA T ++P + F NL Sbjct: 450 LSRRDDKHSALAMAENIDGLNVTNTTSESSATTEPMLPGSS----------FKEDDNLPP 499 Query: 518 RINSYVSKQSDLRLLHMIEINEERFAKILRKW 549 + + K S L+ L E ER A+++++W Sbjct: 500 QGSGLEIKISHLQQLAQSET--ERVAEVIKQW 529 >gi|322432996|ref|YP_004210245.1| flagellar M-ring protein FliF [Acidobacterium sp. MP5ACTX9] gi|321165223|gb|ADW70927.1| flagellar M-ring protein FliF [Acidobacterium sp. MP5ACTX9] Length = 525 Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 116/428 (27%), Positives = 204/428 (47%), Gaps = 33/428 (7%) Query: 1 MAILDQLL----QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLE 56 MA DQ+ QF+ + T R + + A+ + + LF A V +P Y L LE Sbjct: 1 MAGFDQIFVQAKQFWATRTQSQRLFLGVGAAATVGLLALF--ANLMV-TPDYKPLISGLE 57 Query: 57 VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 +D IS L+ I F++S +G SISVP+ V AR+ +A+ + S G+E+FDK Sbjct: 58 SADAQAISADLTAKKIPFQLSPDGKSISVPADQVDAARLDVASN-QSTHSGRLGFEIFDK 116 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 V S+G T F +++ RALEGE+ RTI ++ G+ +ARVH+VM F ASV Sbjct: 117 V-SWGQTEFDEKVNYQRALEGELERTIVTLGGVKSARVHLVMATDSVFLDREKSAKASVT 175 Query: 177 IRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ 235 ++ + + +I+ LV+ AV L DV+++D+ + G + Sbjct: 176 LKLNRGGLSHDETASIQRLVSGAVEGLKPTDVSIIDAD------SNQSMGAAGDGAMGEE 229 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 + ++ + L +G D+ R++V E + T + + YDP V +I+ S ++ Sbjct: 230 GAERQLTQRLMATLTPVVGGDHLRASVNVEYDPGTTEENQEKYDPAVSVPLTIQRSDEST 289 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD-KKEEQSNYEINTKSIATTHDNYKL 354 + T N+P + VP P ++ K E + Y +N + + ++ Sbjct: 290 GAGAGVGGVPGTTS-NVPQ-NKANVPPPVGEDSAQVSKTENATYGVNKITRHSLEPAGRI 347 Query: 355 ERLSIAVVVN---------KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 +R++ A+VV+ G+ TE+ + + Q L +I + A G+++ RGD Sbjct: 348 KRITAALVVDDSVKRKLGANGKWTEIRTKRSPQ-----ELKQIETLAQNAIGLDTTRGDV 402 Query: 406 ITITSMDF 413 I++ ++ F Sbjct: 403 ISVENLAF 410 >gi|312962276|ref|ZP_07776768.1| flagellar M-ring protein FliF [Pseudomonas fluorescens WH6] gi|311283613|gb|EFQ62202.1| flagellar M-ring protein FliF [Pseudomonas fluorescens WH6] Length = 592 Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 148/606 (24%), Positives = 256/606 (42%), Gaps = 104/606 (17%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y LY L D +I L Sbjct: 22 LSFLENLSEMTMLRQVGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMETL 81 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + A+I + + N ++ V + V +AR+ LAA G+ S SN G+E+ DK G + FM+ Sbjct: 82 AAADIAYTVEPNSGALLVKADDVARARMKLAAAGVTPSDSNIGFEILDKDQGLGTSQFME 141 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINP 182 R LEGE+ARTI S++ + ARVH+ +P F + +P+ASV++ R++ P Sbjct: 142 ATRYRRGLEGELARTISSLNNVKGARVHLAIPKSSVFVRDERKPSASVLVELFSGRSLEP 201 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL----GKSLSIVQAIQ 238 AI +LVA +VP L +TV+D G LL+ +M N GK + ++ Sbjct: 202 G---QVMAIINLVATSVPELSKSQITVVDQKGNLLS--DMAENSALTQAGKQFDYSRRME 256 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 + ++ L LG D +++ V A+++ + ++PD RS + S QR+ Sbjct: 257 SMLTQRVHNILQPILGNDRYKAEVSADVDFSAVESTSEQFNPDQPALRSEQ-STSEQRTA 315 Query: 299 TSQPESAVTVEQNMP--------------------------------HVSDRKVPLPRSL 326 ++ P+ N P + D P Sbjct: 316 SNGPQGVPGALSNQPPSPASAPQTTGGAAATAGAIQPGQPLLDANGQQIMDPATGQPMLA 375 Query: 327 ENTDKKEEQS--NYEINTKSIATTHDNYKLERLSIAVVVN--------KGRLTEVLGRSA 376 K QS N+E++ T ++ RLS++VVV+ G +T SA Sbjct: 376 PYPADKRNQSTKNFELDRSISHTKQQQGRVNRLSVSVVVDDQVKVNPADGAVTRAP-WSA 434 Query: 377 DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF-------LENQLFNSGTVQVSFM 429 D+ LA ++V A G ++ RGD++++ +M F + F S Q F Sbjct: 435 DE------LARFTRLVQDAVGFDASRGDSVSVINMPFSAERGETIAEPAFYS---QPWFW 485 Query: 430 DILSRHFATVINALVFLVGTLLVTFLGLHALRR-LHNIDDAKKGEV----GGKSILSPPP 484 DI+ + ++G L + L LR L+NI K ++ GG L Sbjct: 486 DIVKQ-----------VLGVLFILVLVFGVLRPVLNNITGNGKKQLAAFGGGDVELG--- 531 Query: 485 ISSAVTTGLMPNDNIALDSSNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 G + ND ++L + S S +++N+ S ++ + R A Sbjct: 532 -GMGGLDGELANDRVSLGGPQSILLPSPSEGYDAQLNAIKS---------LVAEDPGRVA 581 Query: 544 KILRKW 549 +++++W Sbjct: 582 QVVKEW 587 >gi|258514003|ref|YP_003190225.1| flagellar MS-ring protein [Desulfotomaculum acetoxidans DSM 771] gi|257777708|gb|ACV61602.1| flagellar M-ring protein FliF [Desulfotomaculum acetoxidans DSM 771] Length = 512 Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 108/422 (25%), Positives = 193/422 (45%), Gaps = 38/422 (9%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +LD+L Q ++S + + + ++I + IL + + F+ Y L LE D Sbjct: 6 LLDRLKQRWQSLSQVKKAFVIIAGTGILAATLYLIT---FLTQTSYTPLMTNLEPRDAGA 62 Query: 63 ISVALSEANI-DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L DF+++D G++I VP V + RI LA+ G+ G+ELFD+ N G Sbjct: 63 IEEKLKSLKYEDFKLADQGTTIMVPKEQVYEIRIKLASSGVLQGG-GLGFELFDQ-NQMG 120 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI---- 177 ++ F Q++ RAL+ E+ RTI + + ARVH+V+P F + + ASV I Sbjct: 121 VSDFEQQVDYQRALQEELRRTIIQLEEVEQARVHLVLPQKSVF--VDEQEPASVSIALKL 178 Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA------NEMERNILGKSL 231 + + + + I L ++ L + +V ++D G +L+ +E ++ K Sbjct: 179 KPLAKLKPEQVKGIADLAVGSIQGLKLENVHIIDMQGHILSDTIDTENDEDSSQVINKQQ 238 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + + + E+E I L LG D S V AE++ + Q+I + P KV + Sbjct: 239 QVRREYEKELEKRIQNVLDRVLGTDKAVSMVTAEMDFNKQEINTTTHGPGQKVSEQLINE 298 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 K + Q P +D ++E+ + E +NY+++T Sbjct: 299 KSQGTGLGGVTGTDAQNTQTYPTGTD-------NVESASRDESITNYQVDTTQQKVVQPP 351 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 +++LS +VVV+ G+L+ + + +I +VS A G + RGD I +T++ Sbjct: 352 GTIKKLSTSVVVD-GKLSA------------TRIQQIESLVSTAIGYDQARGDQINVTNI 398 Query: 412 DF 413 F Sbjct: 399 AF 400 >gi|229591853|ref|YP_002873972.1| flagellar MS-ring protein [Pseudomonas fluorescens SBW25] gi|229363719|emb|CAY51114.1| flagellar M-ring protein [Pseudomonas fluorescens SBW25] Length = 593 Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 146/612 (23%), Positives = 257/612 (41%), Gaps = 115/612 (18%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y LY L D +I L Sbjct: 22 LSFLENLSEMTMLRQVGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMETL 81 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + A+I + + N ++ V + V +AR+ LAA G+ S SN G+E+ DK G + FM+ Sbjct: 82 AAADIAYTVEPNSGALLVKADDVARARMKLAAAGVTPSDSNIGFEILDKDQGLGTSQFME 141 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINP 182 R LEGE+ARTI S++ + ARVH+ +P F + +P+ASV++ R++ P Sbjct: 142 ATRYRRGLEGELARTISSLNNVKGARVHLAIPKSSVFVRDERKPSASVLVELFSGRSLEP 201 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL---GKSLSIVQAIQH 239 AI +LVA +VP L +TV+D G LL+ ++ E + L GK + ++ Sbjct: 202 G---QVLAIVNLVATSVPELSKSQITVVDQKGNLLS-DQGENSALTQAGKQFDYSRRVES 257 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 + ++ L LG D +++ V A+++ + ++PD RS ++S + Sbjct: 258 MLTQRVHNILQPVLGNDRYKAEVSADVDFSAVESTSEQFNPDQPALRS-------EQSTS 310 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLEN------------------------------- 328 Q +A Q +P + P P S Sbjct: 311 EQRTAANGPPQGVPGALSNQPPAPASAPQTTGGAAATAGAIQPGQPLLDANGQQIMDPAT 370 Query: 329 ---------TDKKEEQS-NYEINTKSIATTHDNYKLERLSIAVV--------VNKGRLTE 370 DK+ + + N+E++ T ++ RLS++VV G +T Sbjct: 371 GQPMLAPYPADKRNQSTKNFELDRSISHTKQQQGRVNRLSVSVVVDDQVKVNAADGAVTR 430 Query: 371 VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF-------LENQLFNSGT 423 SAD+ LA ++V A G ++ RGD++++ +M F + F S Sbjct: 431 AP-WSADE------LARFTRLVQDAVGFDASRGDSVSVINMPFSAERGEVIAEPAFYS-- 481 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLL-----VTFLGLHALRRLHNIDDAKKGEVGGKS 478 Q F DI+ + V+ LV + G L +T G L D + G +GG Sbjct: 482 -QPWFWDIV-KQVLGVLFILVLVFGVLRPVLNNITGNGKKQLAAFGG-SDVELGGMGG-- 536 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEI 537 G + ND ++L + S S +++N+ S ++ Sbjct: 537 -----------LDGELANDRVSLGGPQSILLPSPSEGYDAQLNAIKS---------LVAE 576 Query: 538 NEERFAKILRKW 549 + R A+++++W Sbjct: 577 DPGRVAQVVKEW 588 >gi|327478787|gb|AEA82097.1| flagellar MS-ring protein [Pseudomonas stutzeri DSM 4166] Length = 558 Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 104/360 (28%), Positives = 171/360 (47%), Gaps = 38/360 (10%) Query: 72 IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131 + +RI I V + +AR+ L A+G+ + +GYELFDK G + F+Q++ Sbjct: 71 LQYRIHPQSGQILVREDQLARARLLLNAKGV-KVAQPAGYELFDKEEPLGTSQFVQDVRL 129 Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPT-ASVMIRAINPSVYKSAE- 189 R+LEGE+ART+ ++ G+ ARVH+ + SF P+ ASVM++ + P S++ Sbjct: 130 KRSLEGELARTVMALKGVQQARVHLAQEENSSFVVSKRAPSKASVMLQ-LEPGYKLSSDQ 188 Query: 190 --AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI---QHEIEMN 244 AI +LVA +VPNL DV V+D G LL+ N+ G QA+ Q + N Sbjct: 189 VGAIVNLVANSVPNLKPEDVGVVDQYGALLSRG---LNVGGGPAQNWQAVEDYQQKAAAN 245 Query: 245 INKALAAFLGVDNFRSAVVAELNM-----------DTQQIREIVYDPDSKVERSIRLSKD 293 I + LA LG+ NFR +V A+++ DT ++R V +S ++R + L Sbjct: 246 IEQVLAPVLGLGNFRISVAADIDFSQKEETFQSYGDTPRLRNEVLRNESALDR-LALGVP 304 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 S P + E P ++ + ++E + + + H + Sbjct: 305 GSLSNRPMPPAPEGEEAQQPATENKGA-------TSLREESTRQMDYDQSVVHVRHAGFA 357 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 L + S+AVV+N E G D AE+ +V +A G RGD ++++ + F Sbjct: 358 LRQQSVAVVLNSAAAPE-------GGWTDEARAELEAMVRSAVGFKQERGDLLSLSVLPF 410 >gi|294508650|ref|YP_003572709.1| flagellar M-ring protein [Salinibacter ruber M8] gi|294344979|emb|CBH25757.1| Flagellar M-ring protein [Salinibacter ruber M8] Length = 532 Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 109/415 (26%), Positives = 185/415 (44%), Gaps = 46/415 (11%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 +A + Q L +G +G L + + I L + ++ + P Y L+ LE Sbjct: 5 LARIQQFLGRLSTGQQVG------LGLLAVGTIALLVGTAYWSSQPDYALLFGDLEPEAA 58 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 NR+ L E + + + GS++ VP + + + R+ ++ G +GYELFD+ + Sbjct: 59 NRVVSRLKEEGTPYELRNQGSAVYVPRASMHELRLQFSSDGT-IDDGQTGYELFDQ-GTL 116 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 G+T FMQ++ RALEGE+A+T+ SI + ARVH+V P+ F +ASV++ Sbjct: 117 GMTDFMQKLNSKRALEGELAQTVSSIGQVEGARVHLVEPEDDPFEAQQVEASASVVLSLT 176 Query: 181 NPSVYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQ 238 S+ ++ + + LVA AV L V V+D G +L+ N + N+ S I +Q Sbjct: 177 GGSLSQAQVQGVTQLVAGAVEKLSPSQVKVIDQDGNMLSDPNAADENVQMTSTQI--DMQ 234 Query: 239 HEIEMNINKA----LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS-KVERSIRLSKD 293 +E + K L +G DN V EL+ D + + DP+S V R+ ++ Sbjct: 235 RSVEEQLMKQGQSMLREVVGPDNAVVRVSTELDFDRTVTEKNLVDPESATVVSEERMREE 294 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 E S V N+E++ + + Sbjct: 295 GGGDEAGNSNSVV-----------------------------RNFEVSRTTKRSEKSVGD 325 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 + RL+++VVV++ R T G + + +A+I +V A G + RGD TI Sbjct: 326 VSRLTVSVVVDQERTTGPDGEPTYEPRSQEEIAKIESLVKNAVGFDEERGDRFTI 380 >gi|83815862|ref|YP_446715.1| flagellar M-ring protein FliF [Salinibacter ruber DSM 13855] gi|83757256|gb|ABC45369.1| flagellar M-ring protein FliF [Salinibacter ruber DSM 13855] Length = 532 Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 109/415 (26%), Positives = 185/415 (44%), Gaps = 46/415 (11%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 +A + Q L +G +G L + + I L + ++ + P Y L+ LE Sbjct: 5 LARIQQFLGRLSTGQQVG------LGLLAVGTIALLVGTAYWSSQPDYALLFGDLEPEAA 58 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 NR+ L E + + + GS++ VP + + + R+ ++ G +GYELFD+ + Sbjct: 59 NRVVSRLKEEGTPYELRNQGSAVYVPRASMHELRLQFSSDGT-IDDGQTGYELFDQ-GTL 116 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 G+T FMQ++ RALEGE+A+T+ SI + ARVH+V P+ F +ASV++ Sbjct: 117 GMTDFMQKLNSKRALEGELAQTVSSIGQVEGARVHLVEPEDDPFEAQQVEASASVVLSLT 176 Query: 181 NPSVYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQ 238 S+ ++ + + LVA AV L V V+D G +L+ N + N+ S I +Q Sbjct: 177 GGSLSQAQVQGVTQLVAGAVEKLSPSQVKVIDQDGNMLSDPNAADENVQMTSTQI--DMQ 234 Query: 239 HEIEMNINKA----LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS-KVERSIRLSKD 293 +E + K L +G DN V EL+ D + + DP+S V R+ ++ Sbjct: 235 RSVEEQLMKQGQSMLREVVGPDNAVVRVSTELDFDRTVTEKNLVDPESATVVSEERMREE 294 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 E S V N+E++ + + Sbjct: 295 GGGDEAGNSNSVV-----------------------------RNFEVSRTTKRSEKSVGD 325 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 + RL+++VVV++ R T G + + +A+I +V A G + RGD TI Sbjct: 326 VSRLTVSVVVDQERTTGPDGEPTYEPRSQEEIAKIESLVKNAVGFDEERGDRFTI 380 >gi|311087544|gb|ADP67623.1| flagellar MS-ring protein [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 545 Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 114/425 (26%), Positives = 209/425 (49%), Gaps = 37/425 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 F SG L +R LI+ ++ + ++ ++ SP Y LY L D I L+E Sbjct: 20 FLSGF-LKNSRFLII--LLTAAAITAVSISVWIKSPEYQVLYNHLSNEDSGSIINELNEM 76 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 I ++ +D+ I VP V + R+ LA LP S G+EL DK FG++ + ++I Sbjct: 77 KIPYQFTDSDGPILVPKDKVYEIRLRLAENNLPRGGS-IGFELLDK-EKFGISQYNEQIN 134 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVY 185 RALEGE+ARTI+ I+ + AR+HI F + + +AS+++ R +N Sbjct: 135 YHRALEGELARTIKKINSVKNARIHIAFSKSSLFLQDKKKSSASIILELQPGRNLNTG-- 192 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS-LSIVQAIQHEIEMN 244 AI HL+++++ +L + ++T++D +GKLL +E + + S + I+ Sbjct: 193 -QINAIMHLISSSISDLPVENITIVDQSGKLLNQTSVEYDQVNDSQFKYTEEIETRYRNR 251 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVE-RSIR-----LSKDAQRSE 298 I L +G+ N + V A+++ + Q+ + Y P+S + +SIR + + ++S Sbjct: 252 IKNILEPLVGIGNIYAQVTAQIDFNAQEKTQEKYSPNSDHKNQSIRSHQIIIHNEIEKSN 311 Query: 299 TSQPESAVTVEQNMPHVS-DRKVPLPRSLENT----DKK---EEQSNYEINTKSIATTHD 350 Q E+ + + + HV + + ++L+N D K + NYE+N T + Sbjct: 312 I-QEETPIPLSNSNNHVYFNNNIKNSKNLKNNYIPVDSKINRDNTVNYELNHSVSHTKMN 370 Query: 351 NYKLERLSIAVVVN--KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 +++RLS AV+VN K + + + S + + I ++ A G + RGD++ + Sbjct: 371 IGEIKRLSAAVIVNFSKDKNGKFVPLSTQK------IKNIEHLIREAIGYSKARGDSVHL 424 Query: 409 TSMDF 413 + F Sbjct: 425 VNASF 429 >gi|219681452|ref|YP_002467837.1| flagellar M-ring protein [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682008|ref|YP_002468392.1| flagellar M-ring protein [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471127|ref|ZP_05635126.1| flagellar MS-ring protein [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219621741|gb|ACL29897.1| flagellar M-ring protein [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624295|gb|ACL30450.1| flagellar M-ring protein [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311086388|gb|ADP66469.1| flagellar MS-ring protein [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 545 Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 114/425 (26%), Positives = 209/425 (49%), Gaps = 37/425 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 F SG L +R LI+ ++ + ++ ++ SP Y LY L D I L+E Sbjct: 20 FLSGF-LKNSRFLII--LLTAAAITAVSISVWIKSPEYQVLYNHLSNEDSGSIINELNEM 76 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 I ++ +D+ I VP V + R+ LA LP S G+EL DK FG++ + ++I Sbjct: 77 KIPYQFTDSDGPILVPKDKVYEIRLRLAENNLPRGGS-IGFELLDK-EKFGISQYNEQIN 134 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVY 185 RALEGE+ARTI+ I+ + AR+HI F + + +AS+++ R +N Sbjct: 135 YHRALEGELARTIKKINSVKNARIHIAFSKSSLFLQDKKKSSASIILELQPGRNLNTG-- 192 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS-LSIVQAIQHEIEMN 244 AI HL+++++ +L + ++T++D +GKLL +E + + S + I+ Sbjct: 193 -QINAIMHLISSSISDLPVENITIVDQSGKLLNQTSVEYDQVNDSQFKYTEEIETRYRNR 251 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVE-RSIR-----LSKDAQRSE 298 I L +G+ N + V A+++ + Q+ + Y P+S + +SIR + + ++S Sbjct: 252 IKNILEPLVGIGNIYAQVTAQIDFNAQEKTQEKYSPNSDHKNQSIRSHQIIIHNEIEKSN 311 Query: 299 TSQPESAVTVEQNMPHVS-DRKVPLPRSLENT----DKK---EEQSNYEINTKSIATTHD 350 Q E+ + + + HV + + ++L+N D K + NYE+N T + Sbjct: 312 I-QEETPIPLSNSNNHVYFNNNIKNSKNLKNNYIPVDSKINRDNTVNYELNHSVSHTKMN 370 Query: 351 NYKLERLSIAVVVN--KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 +++RLS AV+VN K + + + S + + I ++ A G + RGD++ + Sbjct: 371 IGEIKRLSAAVIVNFSKDKNGKFVPLSTQK------IKNIEHLIREAIGYSKARGDSVHL 424 Query: 409 TSMDF 413 + F Sbjct: 425 VNASF 429 >gi|15616695|ref|NP_239907.1| flagellar MS-ring protein [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11386782|sp|P57175|FLIF_BUCAI RecName: Full=Flagellar M-ring protein gi|25304707|pir||A84938 flagellar M-ring protein [imported] - Buchnera sp. (strain APS) gi|10038758|dbj|BAB12793.1| flagellar M-ring protein [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 545 Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 114/425 (26%), Positives = 209/425 (49%), Gaps = 37/425 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 F SG L +R LI+ ++ + ++ ++ SP Y LY L D I L+E Sbjct: 20 FLSGF-LKNSRFLII--LLTAAAITAVSISVWIKSPEYQVLYNHLSNEDRGSIINELNEM 76 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 I ++ +D+ I VP V + R+ LA LP S G+EL DK FG++ + ++I Sbjct: 77 KIPYQFTDSDGPILVPKDKVYEIRLRLAENNLPRGGS-IGFELLDK-EKFGISQYNEQIN 134 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVY 185 RALEGE+ARTI+ I+ + AR+HI F + + +AS+++ R +N Sbjct: 135 YHRALEGELARTIKKINSVKNARIHIAFSKSSLFLQDKKKSSASIILELQPGRNLNTG-- 192 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS-LSIVQAIQHEIEMN 244 AI HL+++++ +L + ++T++D +GKLL +E + + S + I+ Sbjct: 193 -QINAIMHLISSSISDLPVENITIVDQSGKLLNQTSVEYDQVNDSQFKYTEEIETRYRNR 251 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVE-RSIR-----LSKDAQRSE 298 I L +G+ N + V A+++ + Q+ + Y P+S + +SIR + + ++S Sbjct: 252 IKNILEPLVGIGNIYAQVTAQIDFNAQEKTQEKYSPNSDHKNQSIRSHQIIIHNEIEKSN 311 Query: 299 TSQPESAVTVEQNMPHVS-DRKVPLPRSLENT----DKK---EEQSNYEINTKSIATTHD 350 Q E+ + + + HV + + ++L+N D K + NYE+N T + Sbjct: 312 I-QEETPIPLSNSNNHVYFNNNIKNSKNLKNNYIPVDSKINRDNTVNYELNHSVSHTKMN 370 Query: 351 NYKLERLSIAVVVN--KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 +++RLS AV+VN K + + + S + + I ++ A G + RGD++ + Sbjct: 371 IGEIKRLSAAVIVNFSKDKNGKFVPLSTQK------IKNIEHLIREAIGYSKARGDSVHL 424 Query: 409 TSMDF 413 + F Sbjct: 425 VNASF 429 >gi|251789188|ref|YP_003003909.1| flagellar MS-ring protein [Dickeya zeae Ech1591] gi|247537809|gb|ACT06430.1| flagellar M-ring protein FliF [Dickeya zeae Ech1591] Length = 568 Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 80/247 (32%), Positives = 132/247 (53%), Gaps = 11/247 (4%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y LY L D I L + NI +R +++G++I +P+ V + R+ LA Q Sbjct: 46 LWARGPDYRVLYTNLNERDGGSIVSELGKMNIPYRFTESGAAIMIPADKVYETRLKLAQQ 105 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F ++I RALEGE+ART++++ I ARVH+ +P Sbjct: 106 GLPKGGA-VGFELLDQ-EKFGISQFSEQINYQRALEGELARTMETLGPIQNARVHLAIPK 163 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + P+A+V + RA++ + AI +LV+++V L VTV+D TGK Sbjct: 164 PSLFVREQKSPSAAVTVTLQPGRALDDN---QINAITYLVSSSVAGLPADKVTVVDQTGK 220 Query: 216 LLTANEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT N+ R++ L I+ + I LA +G N + V A+++ ++ Sbjct: 221 LLTQNDGSGRDLNAAQLKYANEIEGNYQRRIEAILAPVVGAGNVHAQVTAQIDFANREQT 280 Query: 275 EIVYDPD 281 + Y P+ Sbjct: 281 DEQYQPN 287 >gi|238752878|ref|ZP_04614343.1| Flagellar M-ring protein [Yersinia rohdei ATCC 43380] gi|238708917|gb|EEQ01170.1| Flagellar M-ring protein [Yersinia rohdei ATCC 43380] Length = 541 Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 111/407 (27%), Positives = 203/407 (49%), Gaps = 39/407 (9%) Query: 22 ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81 +L+ A+ ILV + + + +S Y L+ E V ++ L + I +RI+ + Sbjct: 21 LLMGAAAILVTGAIIFS--LWRSSQGYTALFGSQENIPVAQMVEVLDQEAIAYRINPDNG 78 Query: 82 SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 + V + +GKARI LAA+G+ +++ GYEL DK G + F+Q + R+LEGE+A+ Sbjct: 79 QVLVAENQLGKARILLAAKGI-TATLPVGYELMDKETMLGSSQFIQSVRYKRSLEGELAQ 137 Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIG-ARPTASVMIR-----AINPSVYKSAEAIRHLV 195 +I +++ + ARVH+ M + SF A +ASV++R A+ P + AI LV Sbjct: 138 SIMALTAVDYARVHLGMSEASSFAISNRAESSASVVLRLKYGQALKP---EQVGAIVQLV 194 Query: 196 AAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINKALAA 251 A ++P + +V V+D G+LL+ AN + + +Q E +I L++ Sbjct: 195 AGSMPGIKAANVRVVDQHGELLSEAYQANSSGMPSVKSGADLAHYLQSTTEKSIANLLSS 254 Query: 252 FLGVDNFRSAVVAELNMDTQQIREIV--YDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309 +G +N+R +V +L D +I E + Y P+ R+S + + E + + A+ V Sbjct: 255 VVGANNYRISVATQL--DLSRIEETLERYGPEP------RISDENIQQENNNDDMAMGVP 306 Query: 310 ---QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 N P + P ++ + + Q Y + H +KL+++++AV++NK Sbjct: 307 GSLSNQPVAQPGNMTAPTAV---SRSQAQRKYTYDRDIRHVRHPGFKLDKMTVAVILNK- 362 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 A + LAE+ +++ A GI+ +RGD++T+ + F Sbjct: 363 ------SAPALENWAPEQLAELKRLIEDAAGIDVKRGDSLTLNMLAF 403 >gi|311086968|gb|ADP67048.1| flagellar MS-ring protein [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 545 Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 114/425 (26%), Positives = 209/425 (49%), Gaps = 37/425 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 F SG L +R LI+ ++ + ++ ++ SP Y LY L D I L+E Sbjct: 20 FLSGF-LKNSRFLII--LLTAAAITAVSISVWIKSPEYQVLYNHLSNEDSGSIINELNEM 76 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 I ++ +D+ I VP V + R+ LA LP S G+EL DK FG++ + ++I Sbjct: 77 KIPYQFTDSDGLILVPKDKVYEIRLRLAENNLPRGGS-IGFELLDK-EKFGISQYNEQIN 134 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVY 185 RALEGE+ARTI+ I+ + AR+HI F + + +AS+++ R +N Sbjct: 135 YHRALEGELARTIKKINSVKNARIHIAFSKSSLFLQDKKKSSASIILELQPGRNLNTG-- 192 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS-LSIVQAIQHEIEMN 244 AI HL+++++ +L + ++T++D +GKLL +E + + S + I+ Sbjct: 193 -QINAIMHLISSSISDLPVENITIVDQSGKLLNQTSVEYDQVNDSQFKYTEEIETRYRNR 251 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVE-RSIR-----LSKDAQRSE 298 I L +G+ N + V A+++ + Q+ + Y P+S + +SIR + + ++S Sbjct: 252 IKNILEPLVGIGNIYAQVTAQIDFNAQEKTQEKYSPNSDHKNQSIRSHQIIIHNEIEKSN 311 Query: 299 TSQPESAVTVEQNMPHVS-DRKVPLPRSLENT----DKK---EEQSNYEINTKSIATTHD 350 Q E+ + + + HV + + ++L+N D K + NYE+N T + Sbjct: 312 I-QEETPIPLSNSNNHVYFNNNIKNSKNLKNNYIPVDSKINRDNTVNYELNHSVSHTKMN 370 Query: 351 NYKLERLSIAVVVN--KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 +++RLS AV+VN K + + + S + + I ++ A G + RGD++ + Sbjct: 371 IGEIKRLSAAVIVNFSKDKNGKFVPLSTQK------IKNIEHLIREAIGYSKARGDSVHL 424 Query: 409 TSMDF 413 + F Sbjct: 425 VNASF 429 >gi|119476321|ref|ZP_01616672.1| flagellar M-ring protein FliF [marine gamma proteobacterium HTCC2143] gi|119450185|gb|EAW31420.1| flagellar M-ring protein FliF [marine gamma proteobacterium HTCC2143] Length = 562 Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 110/424 (25%), Positives = 203/424 (47%), Gaps = 30/424 (7%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 F ++G R L L + + + A + Y LY L+ D + L Sbjct: 20 FLNGLGNIGILRQLFLMVGLAASVAMGGAIVLWSVGEEYRPLYSSLDHMDPGEVLNILQS 79 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 + ID ++ +N ++ V + + AR+ LA G+ S + G+E+ DK G + FM+ Sbjct: 80 SQIDHKVDENTGALLVAADQIHDARLKLAGAGI-SPDGSFGFEMLDKEQPLGTSQFMESA 138 Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE 189 R LEGE+ RTI SI + ARVH+ +P +F + +PTASV + S + + Sbjct: 139 RFKRGLEGELGRTIASIQAVRGARVHLAIPKTSAFIRDVRKPTASVFLDLYGGSGINTEQ 198 Query: 190 --AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEMNI 245 AI ++VA ++P L + +VTV+D G LL+ + +++ + K L V+ ++ + + Sbjct: 199 VRAIANMVAFSIPELTIQNVTVVDQRGNLLSNFDADQDMAMAHKQLDYVREMEGRLVKRV 258 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREI--VYDPDSKVERSIRLSKDAQRSE----- 298 + L LG NFR+ + A N+D Q+ + +++PD RS + ++ + Sbjct: 259 SSILEPVLGEGNFRAEISA--NVDFTQVEQTDELFNPDLPAIRSEQTVEEGRGGGGVGGV 316 Query: 299 ----TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 ++QP + + V L S+ +T +++ NYE++ T H +L Sbjct: 317 PGALSNQPPRDGQAPEQI--VDGGAAALAESV-STSRRQSVRNYELDRTISHTRHQVGRL 373 Query: 355 ERLSIAVVVNK-----GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 RLS+AV+V+ E++ + +Q ++D ++ +V A G ++ RGD++ I Sbjct: 374 RRLSVAVLVDNTTNIDSETGEIVSVAIEQSELD----QLAILVRDAVGFDAARGDSVNII 429 Query: 410 SMDF 413 + F Sbjct: 430 NSAF 433 >gi|114764044|ref|ZP_01443283.1| flagellar M-ring protein FliF [Pelagibaca bermudensis HTCC2601] gi|114543402|gb|EAU46417.1| flagellar M-ring protein FliF [Roseovarius sp. HTCC2601] Length = 546 Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 137/473 (28%), Positives = 223/473 (47%), Gaps = 46/473 (9%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +L QL + G+ GR R+L++A+ + + R + P LY LE Sbjct: 2 VLQQLATIW--GSLGGRRRVLVIAATLATIAAVLAMGRM-ASQPSMALLYAGLEQGAAGE 58 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + AL I + + G +I VP R+ LA++GLP++S N GYEL D ++ FG Sbjct: 59 VVAALEARGIPYEV--RGGAILVPDMQRDSLRMTLASEGLPANS-NQGYELLDGLSGFGT 115 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 TS M + RA EGE+ARTI + I ARVHI F++ P+AS+ + N Sbjct: 116 TSQMFDAAYWRAKEGELARTIVASPYIATARVHIANSTANPFQR-DVSPSASISV-TTNG 173 Query: 183 SVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240 V A A+++LVA+AVP L DV V+D G L+ A + + G + A+ + Sbjct: 174 DVLSPVQARALKYLVASAVPGLMPEDVAVIDGKGGLIGAE--DDSGAGPTAEDRAALLRD 231 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDT----QQIREIVYDPDSKVERSIRLSKDAQR 296 + + + A +G+ N V E+++DT + IR+ +DP+ +V S +++ Sbjct: 232 ---RVQRLVEARVGLGN----AVVEVSVDTVTESETIRQRQFDPEGRVVISTDTEEESSS 284 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 S+ S V+V N+P S + + E+ NYE++ T ++R Sbjct: 285 SQDSG-GGDVSVASNLPDGEAGGGDS--SQSQSSETRERVNYEVSETMREVTRMPGAIKR 341 Query: 357 LSIAVVVNKGRLTEVLGRSADQGK-----IDSYLAEINKIVSAATGINSRRGDTITITSM 411 L++AV+VN L AD + + LA + +V++A G RGD ITI SM Sbjct: 342 LTVAVLVNG-----TLAAGADGAEQFVPLPEGELAALRDLVASAVGFEEARGDAITIRSM 396 Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFL-VGTLLVT--FLGLHALR 461 F + +G V+ + F+ ++ + + +G L V LGL +R Sbjct: 397 PFERPEGLGTGPVEPGW-------FSMPLDPMTLIQIGVLAVVALILGLFVVR 442 >gi|238762371|ref|ZP_04623342.1| Flagellar M-ring protein [Yersinia kristensenii ATCC 33638] gi|238699356|gb|EEP92102.1| Flagellar M-ring protein [Yersinia kristensenii ATCC 33638] Length = 541 Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 113/430 (26%), Positives = 211/430 (49%), Gaps = 46/430 (10%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +LD++ Q + LG+ + IL + + + + + S Y L+ E V + Sbjct: 1 MLDKIKQQLPA-IRLGKNQKSILMGAMALLVTGAIIFSLWRGSQGYTALFGSQEHIPVTQ 59 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + L I +RI+ + I V + +G+ARI LAA+G+ +++ +GYEL D+ G Sbjct: 60 VVEVLDGEAIAYRINPDNGQILVAENQLGRARILLAAKGI-TATLPTGYELMDQETMLGS 118 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR--PTASVMIRAI 180 + F+Q + R+LEGE+A++I +++ + ARVH+ M + SF I R +ASV++R Sbjct: 119 SQFIQNVRYKRSLEGELAQSIMALTAVDYARVHLGMSEASSF-AISNRSESSASVILRLK 177 Query: 181 NPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIV 234 K+ + AI LVA ++P + +V V+D G+LL+ AN + + Sbjct: 178 YGQTLKTEQVGAIVQLVAGSIPAMKAANVRVVDQHGELLSEAYQANSKGMTNVKSGAELA 237 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI------ 288 +Q E +I L++ +GV+N+R +V +L++ S+VE ++ Sbjct: 238 HYLQSTTEKSIANLLSSVVGVNNYRISVATQLDL-------------SRVEETLERYGAE 284 Query: 289 -RLSKDAQRSETSQPESAVTVE---QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKS 344 R+S + + E + A+ + N P R P + + + Q Y + Sbjct: 285 PRVSDENIQQENGNEDMAMGIPGSLSNQPSAQPRNTNAPAMM---SRSQAQRKYAYDRDI 341 Query: 345 IATTHDNYKLERLSIAVVVNKGRLTEVLGR-SADQGKIDSYLAEINKIVSAATGINSRRG 403 H +KLE++++AV++NK L + +A+Q L E+ +++ A GI+ +RG Sbjct: 342 RHVRHPGFKLEKMTVAVILNKS--APALDKWTAEQ------LNELKRLIEDAAGIDVKRG 393 Query: 404 DTITITSMDF 413 D++T+ + F Sbjct: 394 DSLTLNMLAF 403 >gi|255264100|ref|ZP_05343442.1| flagellar M-ring protein FliF [Thalassiobium sp. R2A62] gi|255106435|gb|EET49109.1| flagellar M-ring protein FliF [Thalassiobium sp. R2A62] Length = 531 Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 156/543 (28%), Positives = 247/543 (45%), Gaps = 61/543 (11%) Query: 25 LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSIS 84 LASV + +LFM ++P Y LY LE S + +L + + I G SI Sbjct: 21 LASVAVFLAVLFMTR--VASTPTYALLYSGLESSASGEVIASLEAQSAAYEI--RGDSIF 76 Query: 85 VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144 V S+ + R+ LA+ GLP + GYEL D + FG TS M + RA EGE+ARTI Sbjct: 77 VDSAKRDQLRMTLASAGLPKPTVQ-GYELLDTLTGFGTTSQMFDAAYWRAKEGELARTIV 135 Query: 145 SISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-AINPSVYKSAEAIRHLVAAAVPNLD 203 + I ARVHI F++ A TASV + + + +A+++LVA+AV + Sbjct: 136 ATPAIRTARVHISNGTSRPFQRNQAT-TASVTVNTGVAGLTTQQIKALQYLVASAVAQMS 194 Query: 204 MGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVV 263 DV ++D L++ + + ++ + I+ NI + L A +G N V Sbjct: 195 PEDVAIIDDQRGLVSGAGLASDPTTRT-----SETENIKRNIERLLEARVGFGN----AV 245 Query: 264 AELNM----DTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRK 319 ELN+ D + I E DP+S+V S +++ S T Q +VTV N+P D Sbjct: 246 VELNVQRTTDIETILERRVDPNSRVAISTE-TEERSTSSTDQNGGSVTVASNLPD-GDAA 303 Query: 320 VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQG 379 S + E+ N+E++ T +++R+++AV+V+ + G + + Sbjct: 304 ADSGTSNSQNSESRERVNFEMSETQREVTRGPGQVQRITVAVLVDGVNGLDSDGNTTIEP 363 Query: 380 KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDIL-SRHFAT 438 + + LA++ ++V++A G + RGD ITI S+ F L GTV S ++ S + + Sbjct: 364 RSEEELADLRELVASAIGFDENRGDKITIRSLAF--EPLPVEGTVAGSSKNLFDSLNLMS 421 Query: 439 VINALVFLVGTLLVTFLGLHALR---------RLHNIDDAKK---GEVGGKSILSPPPIS 486 +I V + LGL +R R IDD+ GE+ L Sbjct: 422 LIQ---IAVAASVAIVLGLFVVRPVLMSGRAYRPALIDDSGPLLDGEIDTSLGL------ 472 Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546 SA G M N + A+ ++ S N V +RL +IE +E IL Sbjct: 473 SATEIGEMKNVDGAVQVAD----------PSMPNDPV-----VRLRALIEERQEETVDIL 517 Query: 547 RKW 549 R W Sbjct: 518 RDW 520 >gi|254499113|ref|ZP_05111803.1| truncated flagellar M-ring protein FliF [Legionella drancourtii LLAP12] gi|254351652|gb|EET10497.1| truncated flagellar M-ring protein FliF [Legionella drancourtii LLAP12] Length = 403 Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 96/361 (26%), Positives = 174/361 (48%), Gaps = 42/361 (11%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110 ++ L+ D N++ L + NI +++ G I + +V K R+ + GL + N G Sbjct: 1 MFSHLDEQDANKVLSQLEQENISYQVRHGGQDILIDKDLVAKTRLKIMGSGL-QLAGNVG 59 Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170 +ELFDK N FG+T F Q+I RAL+GE+ RTI S I ARVH+V+P+ F + Sbjct: 60 FELFDK-NDFGMTDFSQKINYQRALQGELERTISSFDEIRQARVHLVIPETHLFDHEENQ 118 Query: 171 PTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS 230 P A++ + + +I+ LVAA+V +L + +V V+D G L+ + E ++ Sbjct: 119 PKAAITLHLKQALTNQQVRSIQQLVAASVAHLSLKNVVVVDQNGNTLS--QTEEDLSSTH 176 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290 + + I+H + + + L + + AE+N D Q RE++ P +K + I Sbjct: 177 FASKKNIEHYLNDKVTQMLHKIFAKNQVMVKINAEINYDELQ-RELI-KPQTKGQ--ITH 232 Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 K+ + S TV++ ++ + L ++ E +K E+ ++ T Sbjct: 233 EKEIKHS---------TVDKKGKQKGNQDLTLEKTYEFGSEK------ELFKRASGT--- 274 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 +ERLSI+VV+ Q +A++ +++ G N +RGD I++ + Sbjct: 275 ---IERLSISVVI-------------PQYTDAKTIAQVQRLIKNTVGFNEKRGDVISVEA 318 Query: 411 M 411 + Sbjct: 319 L 319 >gi|308050036|ref|YP_003913602.1| flagellar M-ring protein FliF [Ferrimonas balearica DSM 9799] gi|307632226|gb|ADN76528.1| flagellar M-ring protein FliF [Ferrimonas balearica DSM 9799] Length = 540 Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 110/405 (27%), Positives = 202/405 (49%), Gaps = 37/405 (9%) Query: 22 ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81 I ++A+V+ I+L + + S Y LY E D I L I +R+ + Sbjct: 41 IAVMATVVATVIVLVL----WTASRGYRPLYGSQEGFDSAEIIEVLEAEKIPYRMQADSG 96 Query: 82 SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 I V +G+AR+ LAA+G+ + +G EL DK + G + F++E LEGE++R Sbjct: 97 QILVLEDQLGRARMTLAARGI-RAKMPAGMELLDKAGALGSSQFLEEARYRLGLEGELSR 155 Query: 142 TIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAA 198 TI ++ + +ARVH+ +P F R+ +P+A+VM+ + + EAI +LV A Sbjct: 156 TIMAMKAVRSARVHLAIPKRTLFIRQQPEKPSAAVMLELYSGATLSRDQVEAIVNLVVGA 215 Query: 199 VPNLDMGDVTVLDSTGKLLTAN-EMERNIL---GKSLSIVQAIQHEIEMNINKALAAFLG 254 V + + V+V+D G+LL+A+ E+ + + + L+ Q ++ + + L LG Sbjct: 216 VTAMPVDAVSVVDQNGRLLSADLELAQELARSGERQLTYNQQMEQALNQRASDMLQPILG 275 Query: 255 VDNFRSAVVAELNMDT-QQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE---Q 310 N+R V A +N D ++ RE V DP++ V ++++A RS+T A+ + Sbjct: 276 YGNYRVQVAARVNFDQIEETREQV-DPENTV-----VTREASRSDTRGGNLAIGIPGALS 329 Query: 311 NMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK--GRL 368 N P ++ +N + E+ +E + T +LERLS++V++N G+ Sbjct: 330 NQPPATNADEEEAAPAQNLSSESER-YFETSRAVRHTKFQQAQLERLSVSVLLNSEAGQW 388 Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 + Q ++D ++ ++V A G + RGD++++ + F Sbjct: 389 S--------QAQLD----QLGQLVQDAIGFEAARGDSLSLHAFPF 421 >gi|91200223|emb|CAJ73267.1| similar to flagellar MS ring protein [Candidatus Kuenenia stuttgartiensis] Length = 584 Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 124/448 (27%), Positives = 215/448 (47%), Gaps = 36/448 (8%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 I+ S+ L ++ + + P + LY +L + I L EANI +RIS NG++ Sbjct: 25 FIMISLTLSFLIGIVGVMQWARKPDFGLLYGELSPKESGEIINHLREANIPYRISGNGTT 84 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ + + R+ A++GLP +GYEL DKV FG + F+Q+I RA++GE+A+T Sbjct: 85 ILVPNDKIYEMRLKFASEGLPHE--QTGYELLDKVG-FGSSDFIQKINYRRAIQGELAKT 141 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 I+ + + A+VH+ +P+ F + PTASV+++ K +I HLV+++V Sbjct: 142 IKHLDFVDWAQVHLAIPEKSLFVEDEKPPTASVVLKLKTGGKLKPERVASIVHLVSSSVE 201 Query: 201 NLDMGDVTVLDSTGKLLTANEMERNILGKS---LSIVQAIQHEIEMNINKALAAFLGVDN 257 L +VTV D+ G LL+ E + G S L I + I+ L +G Sbjct: 202 GLIPENVTVTDTRGNLLSEKESPFSQTGASNDQLEIKKKIEEYYVAKAQDMLDRIVGAGK 261 Query: 258 FRSAVVAELNMDTQQIREIVYDPDSKVER----SIRLSKDAQRSETSQPESAVTVEQNMP 313 V A+L+ ++I +DP+ +V + + ++S S P + N+ Sbjct: 262 SVVRVSADLDFRHVDEKQIEFDPERRVPKVQTVTTKVSGGTPFSGGGVP--GMQANLNLS 319 Query: 314 HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373 S + E T Q+ YE++ + L+RLS+AV+V+ G+ ++ Sbjct: 320 QSSMLQSSGSSEEEET----AQTQYELSKVERMVSDHGANLKRLSVAVLVD-GKYEKI-- 372 Query: 374 RSADQGKI-DSYLAEINK-------IVSAATGINS-RRGDTITITSMDFLENQLFNSGTV 424 ++ GKI +Y++ N+ +V A G+N R D+ I ++ F E + Sbjct: 373 -ESEDGKIQQTYVSRNNEEMKGIASLVKQALGVNMVSRNDSFEIQNVQFYEADYAEEEAI 431 Query: 425 -----QVSFMDILSRHFATVINALVFLV 447 Q FM L+++ + I L+FL+ Sbjct: 432 LKKEQQKEFMLKLAKNGSLGITVLMFLM 459 >gi|148980292|ref|ZP_01815979.1| flagellar M-ring protein [Vibrionales bacterium SWAT-3] gi|145961311|gb|EDK26621.1| flagellar M-ring protein [Vibrionales bacterium SWAT-3] Length = 557 Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 122/435 (28%), Positives = 199/435 (45%), Gaps = 38/435 (8%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +S + LY K D +++ L E +I +++S + I VP V K R+ LA++ Sbjct: 58 LWTSSERFRPLYSKSANFDSSQVLHMLDEESIRYQLSQDDGQILVPEGDVAKIRMILASK 117 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GL SG++ D S G + FM+ ALEGE+AR+I ++S + ARVH+ +P Sbjct: 118 GL-KEQLPSGFDSLDSSKSLGESQFMENARYRHALEGELARSITTMSAVSLARVHLAIPK 176 Query: 161 MGSF-RKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F R +P ASV++ IN K E+I +LV+ AV L V V+D G+LL Sbjct: 177 ESLFMRDDAEQPRASVIVHIINGMDLKPTQVESIINLVSGAVIGLKSEHVRVVDQHGRLL 236 Query: 218 TANEMERNILGKSLSIVQAIQHEIEMNINKALAA--------FLGVDNFRSAVVAELNMD 269 + + +I ++ Q + + N+ K L A LG NFR + ++++ Sbjct: 237 SNDATVGDI-----TVTTGKQSDYKRNLEKTLVAQATDMLTPILGAANFRVQIASDIDFS 291 Query: 270 -TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 ++ EI DP V R L D +E+S N P V+D + P P Sbjct: 292 KVEETEEIYADP---VVRKETLLSDM--NESSMALGIPGALSNTPPVTDGE-PQPEPNAK 345 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 ++ E +Y ++ K T H L+ LS+++VVN + +Q L + Sbjct: 346 VNRSETSRDYAVSGKVRHTQHQQGVLQNLSVSIVVND-------LANPNQTWTPEELTNV 398 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 +V +A G N+ RGD+I T F + S Q + H ++ L +L+G Sbjct: 399 ENVVRSAIGFNTERGDSIHTTHFPF----VIASIPEQAPVAWFENTH---IMQPLKYLLG 451 Query: 449 TLLVTFLGLHALRRL 463 +L + + LR L Sbjct: 452 VMLSGLMIMVVLRPL 466 >gi|242238981|ref|YP_002987162.1| flagellar MS-ring protein [Dickeya dadantii Ech703] gi|242131038|gb|ACS85340.1| flagellar M-ring protein FliF [Dickeya dadantii Ech703] Length = 569 Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 112/453 (24%), Positives = 210/453 (46%), Gaps = 53/453 (11%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + SP Y LY L D + L++ N+ +R +DNG +I +PS + R+ LA G Sbjct: 48 WAKSPDYRVLYSNLNDRDGGEVVTQLTQMNVPYRFADNGGAILIPSDKIYDTRLRLAQLG 107 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP + G+EL D+ FG++ F ++I RALEGE++RTI+++ + +ARVH+ +P Sbjct: 108 LPKGGA-VGFELLDQ-EKFGISQFSEQINYQRALEGELSRTIETLGPVHSARVHLAIPKP 165 Query: 162 GSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 F + P+ASV + RA++ AI ++V+++V L +VTV+D G+L Sbjct: 166 SLFVREQKSPSASVTLNLQPGRALDEG---QINAIVYMVSSSVSGLPPENVTVVDQNGRL 222 Query: 217 LTANEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 L+ + R++ L ++ + I L +G+ N + V A+++ ++ + Sbjct: 223 LSQTDAAGRDLNAAQLKYATEVEGRYQRRIEAILTPIVGMGNVHAQVTAQIDFSNREQTD 282 Query: 276 IVYDPDSKVE-----------------RSIRLSKDAQRSETS-QPESAVTVEQNMPHVSD 317 Y P+ R+I A ++ S P + VT N + ++ Sbjct: 283 EQYQPNQTPNQAAVRSQQSSQSEQLGGRNIGGVPGALSNQPSATPTAPVTTPGNQTNQNN 342 Query: 318 RKVPL--------------PRSLENTDKKEEQS-NYEINTKSIATTHDNYKLERLSIAVV 362 L++++ + + + NYE++ T ++RLS+AVV Sbjct: 343 ASQTNAANNASAGAQAGTSASGLQSSNTRRDSTINYEVDRTIRHTKQSAGNVQRLSVAVV 402 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 VN +E G++A + + +I + G +S RGDT+ + + F E G Sbjct: 403 VNYALNSE--GKAA--ALSEEQVKQIESLTRETMGFSSDRGDTLNVVNAPFNE---VTDG 455 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455 + ++ F + F ++ ++ + LLV ++ Sbjct: 456 SGELPFWQ--KQAFLDLVTSIGKWLLVLLVAWI 486 >gi|163856458|ref|YP_001630756.1| flagellar MS-ring protein [Bordetella petrii DSM 12804] gi|163260186|emb|CAP42488.1| flagellar M-ring protein FliF [Bordetella petrii] Length = 559 Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 123/460 (26%), Positives = 202/460 (43%), Gaps = 69/460 (15%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y L+ L+ D I AL + N+ +R S +G ++ VP+ V R+ LA Q Sbjct: 45 MWGREPDYKVLFANLDDRDGGAIVSALGQMNVPYRFSGDGRALLVPADRVYATRMQLAGQ 104 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S G+EL D FG + F ++I R LEGE+AR+I++++ + +ARVH+ +P Sbjct: 105 GLPRGGS-VGFELLDNAR-FGASQFAEQINYQRGLEGELARSIEAMNTVQSARVHLALPR 162 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + PTASV++ A+ A+ LVA++VP+L +++++D G+LL+ Sbjct: 163 QSLFVRDRQAPTASVLLHLYPGRSLGDAQVAAVAWLVASSVPDLTAENISIVDQNGRLLS 222 Query: 219 ANEMERNILGKSLSIVQA-IQHEIEM----NINKALAAFLGVDNFRSAVVAELNMDTQQI 273 A E G+ L Q+ ++ +IE I L +G N ++ AE++ ++ Sbjct: 223 APLGE----GRGLDADQSRLRRDIEQRTVERILTILNPLVGPGNVQAQASAEMDFARREQ 278 Query: 274 REIVYDPDSKVERSIRLSKDAQRS--------------ETSQPESAVTV----EQNMPHV 315 VY P+ + ++ SK S ++QP +A P Sbjct: 279 TSEVYRPNQEPGQAAVRSKQTSDSLQTGIDPAQGVPGALSNQPPAAAQAPIVNPPAAPQA 338 Query: 316 SDRKVP------------------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 + P PR L ++ + NYE++ L+RL Sbjct: 339 AQGGQPGQLAQAGQNAAQGAATQAAPR-LPTNNRNDATINYEVDRTISHVKQPVGMLKRL 397 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 S+AVVVN L + G Q + L ++ +V A G + RGD++ + N Sbjct: 398 SVAVVVNY--LPDSSGEP--QPLPEEELTKLTNLVREAMGYSEARGDSLNLV------NS 447 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457 FN V+ F L+ LV T+L GL Sbjct: 448 QFNDKPVKPPFWRDPE---------LLDLVKTVLAWVFGL 478 >gi|146277680|ref|YP_001167839.1| flagellar M-ring protein FliF [Rhodobacter sphaeroides ATCC 17025] gi|145555921|gb|ABP70534.1| flagellar M-ring protein FliF [Rhodobacter sphaeroides ATCC 17025] Length = 572 Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 124/440 (28%), Positives = 199/440 (45%), Gaps = 44/440 (10%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 ++ QL QF G G R + A VIL +L +A + P LY L ++ Sbjct: 23 GMVSQLRQF---GDQPGLRRAMP-AIVILSVTVLALAGWILMREPSRVTLYPGLPEAEKA 78 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 R+ L+ I I + ++VP +AR+ LAAQGLP + L D G Sbjct: 79 RVIDTLTGGGIAAVIDERTGEVAVPGGDYHRARMLLAAQGLPQGLPDGNAMLSDL--PMG 136 Query: 122 LTSFMQEITRVR-ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 TS E R+R A E ++AR+I IS + AARVH+ +P+ +F + P ASV ++ Sbjct: 137 -TSKSVETARLRQAQELDLARSITEISAVSAARVHLALPERSAFLRDSQPPRASVFLQVA 195 Query: 181 NPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQ 238 A EAI +LV+++VP + DVTV+D G+LL+ + +L + +Q Sbjct: 196 PGRALDGAQVEAIVNLVSSSVPGMARQDVTVVDQMGRLLSRGSDDPAVLLND----RQLQ 251 Query: 239 HEIEMN------INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292 H ++M I L+ G N V +++ Q+IRE DPD R+ LS+ Sbjct: 252 HRVQMETLYRNRIESLLSPITGPGNLAVQVTIDMDFTRQEIREEQVDPD----RTAILSE 307 Query: 293 DAQRSETSQPES--------------AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNY 338 +Q E++ P++ A E P + P RS + N+ Sbjct: 308 QSQVEESADPQARGIPGAVANAPPPEAALAEGAPPTEAGAAPPALRSRSQNSTR----NF 363 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI--DSYLAEINKIVSAAT 396 EI+ K T ++ R+S AVV+ A + ++ A+++++ +A Sbjct: 364 EISRKVETTLPATARIARVSAAVVIRAQPQPAPADPEAPSPPLLPEALQADLDRLTRSAI 423 Query: 397 GINSRRGDTITITSMDFLEN 416 G + RGD +TIT+ FL+ Sbjct: 424 GFDETRGDVVTITAQPFLDT 443 >gi|146309431|ref|YP_001189896.1| flagellar MS-ring protein [Pseudomonas mendocina ymp] gi|145577632|gb|ABP87164.1| flagellar M-ring protein FliF [Pseudomonas mendocina ymp] Length = 559 Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 113/389 (29%), Positives = 183/389 (47%), Gaps = 45/389 (11%) Query: 48 YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 + LY E + L I +R+ + V +G+AR+ LAA+G+ Sbjct: 47 FRPLYGTGEAYPAAEVMQVLDGDAISYRLHPQSGQVLVREDQLGRARMLLAAKGV-QVKV 105 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 +GYELFDK G + F+Q++ R+LEGE+ART+ ++ G+ ARVH+ + + SF + Sbjct: 106 PAGYELFDKDEPLGTSQFVQDVRLKRSLEGELARTVMALKGVEGARVHLALQESSSF-VV 164 Query: 168 GARPT--ASVMIRAINPSVYKSAE----AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE 221 G R ASVM++ + P YK A AI +LVA +VP LD +V V+D G LL+ Sbjct: 165 GKREPGKASVMLQ-LAPG-YKLAPEQVSAIVNLVAGSVPQLDAANVQVVDQYGALLS--- 219 Query: 222 MERNI--LG---KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 R I LG ++ +V Q++ N LA LG N+R +V A+++ ++ Sbjct: 220 --RGIDTLGGPVQNWQVVDDYQNKAVANAEAVLAPVLGNGNYRISVAADIDFSQKEETFQ 277 Query: 277 VYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKE--- 333 Y + RL + R E+ + A+ V ++ + + P P + + E Sbjct: 278 AYG------ETPRLRNEVLRDESVLDQLALGVPGSLANRPPQPAPEPVEGQPPAEGEAAN 331 Query: 334 -------EQSNYEINTKSIAT--THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY 384 ++SN +++ T H + L + SIAVV+N E G Sbjct: 332 KAATSLRKESNRQLDYDQSVTHVKHAPFSLRQQSIAVVLNAAAAPE-------GGWTAEA 384 Query: 385 LAEINKIVSAATGINSRRGDTITITSMDF 413 AE+ +V +A G N RGD +T++ F Sbjct: 385 RAELEAMVKSAVGFNQARGDLLTLSVFPF 413 >gi|285018180|ref|YP_003375891.1| flagellar biosynthesis lipoprotein flif [Xanthomonas albilineans GPE PC73] gi|283473398|emb|CBA15903.1| probable flagellar biosynthesis lipoprotein flif [Xanthomonas albilineans] Length = 569 Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 105/394 (26%), Positives = 180/394 (45%), Gaps = 25/394 (6%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 F+ P Y LY L+ + L A I F++ + +I+VP + AR+ LA Sbjct: 49 FWSQKPDYTPLYTGLDEKGTAEATDLLRTAQIPFKLDPSTGAITVPQEKLYDARLKLAGS 108 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GL SS N G+E+ +K FG++ F++ ALE E+ARTI S+ + ARVH+ +P Sbjct: 109 GLTDSSGNMGFEVMEKDPGFGVSQFVENARYQHALETELARTIASLRPVREARVHLAIPK 168 Query: 161 MGSFRKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 +F + +ASV+ +R N +AI ++VA+++P+L VTV+D +G++LT Sbjct: 169 PSAFTRQREAASASVVLELRGGNTLERNQVDAIVNMVASSIPDLSPNRVTVVDQSGRMLT 228 Query: 219 ANEMERNILGKSLSIVQAIQHEIEMN--INKALAAFLGVDNFRSAVVAELNMD-TQQIRE 275 + + + Q + E N I + L G V +++ T++ RE Sbjct: 229 IADPNSDAALNAAQFDQIRRQESSFNQRIRELLEPMTGPGRVNPEVSVDMDFSVTEEARE 288 Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQ--PESAVTVEQNMPHVSD-------------RKV 320 + Y+ D RS ++S S TS+ P+ N P + Sbjct: 289 L-YNGDPPKLRSEQVSD----SNTSKGGPQGVPGATSNSPGATPTGQPAAAGTPAAAAGA 343 Query: 321 PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380 + K NYE++ T +++R+S+AV+V+ G+ +Q Sbjct: 344 NQQAANPTESSKSATRNYELDRTLQHTRQPAGRIKRVSVAVLVDHVPRPGPKGKMVEQAL 403 Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 + L I +V A G N+ RGDT+++ + F+ Sbjct: 404 SAAELTRIEGLVKQAVGFNAERGDTVSVMNAPFV 437 >gi|256370955|ref|YP_003108779.1| flagellar M-ring protein FliF [Acidimicrobium ferrooxidans DSM 10331] gi|256007539|gb|ACU53106.1| flagellar M-ring protein FliF [Acidimicrobium ferrooxidans DSM 10331] Length = 513 Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 121/459 (26%), Positives = 219/459 (47%), Gaps = 50/459 (10%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L+ F SG + G+ ++++ ++V I + +A+ +SP Y L+ L D I+ L Sbjct: 14 LRRFASGFTTGQKAVVMVGIALVVAIAVALAS--LTSSPSYGVLFSGLSAQDAGSITAKL 71 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS--F 125 A + + +++ G+++ VP ++V + R+ LA GLPS ++ +N +TS Sbjct: 72 QSAGVPYELTNGGTTVLVPQNLVDQERVSLAEAGLPSQTAG-----LTSLNGLSITSSQI 126 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG--ARPTASVMIRAINPS 183 Q+ AL+ ++A+TI++I+G+ +A+V++ +P +F IG ++P+ASV++ ++ Sbjct: 127 TQQADYQAALQSQLAQTIEAINGVQSAQVNLALPPTDAF-AIGQSSQPSASVIVT-LDAG 184 Query: 184 V---YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240 V + EAI HLVA+A+P ++ DVTV D G +L A + N G S Q + Sbjct: 185 VSLTSQQVEAIVHLVASAIPGMNANDVTVADQNGDVLAAPGLGVNAQGAGQS-AQGFDSQ 243 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMD-----TQQIREIVYDPDSKVERSIRLSKDAQ 295 +E +I L +G N V A L+ + TQ I+ P + ++ ++ Sbjct: 244 LEASIQSMLDTIVGPGNANVRVAATLSTNQVTTKTQSIQTQKGKPLTTPTQTQTQTQTFT 303 Query: 296 RSETSQPESAVT--VEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 + T + T + VS K + + Y I + Sbjct: 304 GNGTVPGGTLGTTGIATTGNQVSTYK-----------QTSSTTQYAIGQVTQTVQQAPGA 352 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 ++RLS+AV VN + V G S LA++ ++V+AA GI RGDT+++ ++ F Sbjct: 353 IQRLSVAVAVN----SHVKGLS---------LAKLRQVVAAAAGIVPARGDTLSVVAVPF 399 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452 SG F IL A V+ ++ +G +L+ Sbjct: 400 PALATTPSGAGSSLFGSILG--IAKVVLLVLGALGAILL 436 >gi|221069298|ref|ZP_03545403.1| flagellar M-ring protein FliF [Comamonas testosteroni KF-1] gi|220714321|gb|EED69689.1| flagellar M-ring protein FliF [Comamonas testosteroni KF-1] Length = 568 Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 95/344 (27%), Positives = 172/344 (50%), Gaps = 25/344 (7%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 F P Y L+ + D I L++ N+ ++ S+ G +I +P+ V R+ LA QG Sbjct: 56 FYRQPDYKMLFSNVSDKDGGAIVAQLTQMNVPYKYSEGGGAILIPADRVHDVRLKLATQG 115 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S +G+EL + + FG+T F + + R LEGE+ R+I +++ + +ARVH+ +P+ Sbjct: 116 LPKGSV-TGFELMEN-SKFGITQFQERLNFQRGLEGELTRSILALNAVQSARVHLALPNQ 173 Query: 162 GSFRKIGARPTASVMIRAINPS-VYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + +P+ASV++ +++P + A+ I HLVA++VP ++ V+V+D TGKLL+ Sbjct: 174 NGFFREQQKPSASVLL-SLHPGRMLDRAQIAGIVHLVASSVPEMEPSAVSVVDDTGKLLS 232 Query: 219 ANEMERNILG---KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 + + N G + Q ++ + I L +G +N ++ V AEL+ + Sbjct: 233 QSP-DGNAGGVDMQQFLYTQQVEQQYVRRILDILEPVVGKNNVKAQVSAELDFSQTESTS 291 Query: 276 IVYDPDSKVERSIRLSKDAQRS---ETSQPESAV--TVEQNMPHVSDRKV----PLPRSL 326 + P+ + S+ + +T+ P + V P S + P P++ Sbjct: 292 EQHRPNQSTDGGAVRSQQVMETNGDKTATPPTGVPGATSNQPPQNSTAPINGANPAPQAA 351 Query: 327 ------ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 +K+E +NYE++ T ++RL+ AVVVN Sbjct: 352 GAGQGNAQGNKRESITNYEVDKTVKVTRGSTGTVKRLTAAVVVN 395 >gi|325918317|ref|ZP_08180454.1| flagellar basal-body M-ring protein/flagellar hook-basal body protein FliF [Xanthomonas vesicatoria ATCC 35937] gi|325535457|gb|EGD07316.1| flagellar basal-body M-ring protein/flagellar hook-basal body protein FliF [Xanthomonas vesicatoria ATCC 35937] Length = 574 Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 133/569 (23%), Positives = 249/569 (43%), Gaps = 38/569 (6%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 Q+F SL TR L + ++I + + +A F+ P Y +LY L+ + L Sbjct: 19 QWFDRVRSLQITRKLTMMAMIALAVGAGLAVFFWSQKPGYQSLYTGLDEKGNAEAADLLR 78 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 A I F+I +ISVP + AR+ LA GL + G+EL +K FG++ F++ Sbjct: 79 TAQIPFKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQFVEN 138 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYK 186 ALE E++RTI ++ + ARVH+ +P +F + +ASV+ +R Sbjct: 139 ARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQGLERN 198 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN-- 244 +AI +LVA+++P++ VTV+D +G++L+ + + + Q + E N Sbjct: 199 QVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESSYNQR 258 Query: 245 INKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 I + L G V +++ ++ RE+ Y+ + RS ++S D+ S T P+ Sbjct: 259 IRELLEPMTGPGRVNPEVSVDMDFSVVEEAREL-YNGEPAKLRSEQVS-DSSTSATG-PQ 315 Query: 304 SAVTVEQNMP--------------HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 N P + + K NYE++ T Sbjct: 316 GPPGATSNSPGQPPAPAVAGAPGTPAAANGQAAAPAAPTESSKSATRNYELDRTLQHTRQ 375 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 +++R+S+AV+++ G+ +Q + L I +V A G ++ RGDT+++ Sbjct: 376 PAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQAVGFDAARGDTVSVM 435 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL--GL--HALRRLHN 465 + F+ + +G + + V N L LVG ++V L G+ LR+L Sbjct: 436 NAPFVREAV--AGEEGPKWWED-----PRVQNGLRLLVGAVVVLALLFGVVRPTLRQLTG 488 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 + K E G + +P + ++ DN + D + ++ I + Sbjct: 489 VTAVKDKERGAGNDGTP----QSADVRMVNEDNDLMPGLEDDTAQIGQEKKTPIALPDAY 544 Query: 526 QSDLRLL-HMIEINEERFAKILRKWARSE 553 + +R+ ++ + +R A++++ W SE Sbjct: 545 EERMRVAREAVKADSKRVAQVVKGWVASE 573 >gi|330899425|gb|EGH30844.1| flagellar MS-ring protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 319 Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 85/275 (30%), Positives = 139/275 (50%), Gaps = 11/275 (4%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92 + + A + P Y LY L D +I L+ ANI++ + N ++ V S V + Sbjct: 49 VAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTLTAANINYTVEPNSGALLVKSDDVQR 108 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 ARI LA G+ + +N G+E+ DK G + FM+ R LEGE+ARTI +++ + A Sbjct: 109 ARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFMEATRYRRGLEGELARTISALNNVKGA 168 Query: 153 RVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDV 207 RVH+ +P F + +P+ASV++ R++ PS AI +LVA +VP L + Sbjct: 169 RVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEPS---QVMAIINLVATSVPELSKSQI 225 Query: 208 TVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE 265 TV+D G LL+ A E + GK + ++ + + L LG D +++ V A Sbjct: 226 TVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGMLTQRVQNILQPILGNDRYKAEVSAV 285 Query: 266 LNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 ++ + ++PD RS + S + QRS +S Sbjct: 286 VDFSAVESTAESFNPDQPALRSEQ-SVNEQRSSSS 319 >gi|283784015|ref|YP_003363880.1| lateral flagellar M-ring protein [Citrobacter rodentium ICC168] gi|282947469|emb|CBG87016.1| lateral flagellar M-ring protein [Citrobacter rodentium ICC168] Length = 554 Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 112/402 (27%), Positives = 202/402 (50%), Gaps = 50/402 (12%) Query: 41 FFVNSPH-YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 NS H Y +LY + E V++I L +++RI I VP + K R+ LAA Sbjct: 42 LLWNSNHGYVSLYGRQENLPVSQIVTVLDGEKLEYRIDPQSGQILVPEEALSKTRMALAA 101 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 +G+ + N GYEL DK G + F+Q I R+LEGE+A++I ++ + +ARVH+ + Sbjct: 102 KGVQALLPN-GYELMDKDEVLGSSQFVQNIRYKRSLEGELAQSIMTLDAVESARVHLALN 160 Query: 160 DMGSFRKIGARP--TASVMIRAINPSVYKSAE-------AIRHLVAAAVPNLDMGDVTVL 210 + SF + RP +ASV++R ++ A+ AI HLV+ ++P L V+V+ Sbjct: 161 EESSF-VVSDRPQNSASVVVR-----LHYGAKLDMDQVNAIVHLVSGSIPGLKATQVSVV 214 Query: 211 DSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAEL 266 D G LLT A E K I+Q IQ + ++ L + +G N+R +V+ +L Sbjct: 215 DQAGNLLTDGTGAGEAVAATTRKHDQILQDIQDKTRASVANVLDSLVGPGNYRISVMPDL 274 Query: 267 NM-DTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ-------------PESAVTVEQNM 312 ++ D + RE Y + KV R ++ Q S+T+Q P + V N Sbjct: 275 DLSDIDETREH-YGNEPKVNR----EENVQDSDTNQIAMGIPGSLSNRPPVAPNQVTNNA 329 Query: 313 PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372 + P P++L + + +Y+ + + I + + ++RL +AVV+N+ + Sbjct: 330 SATTAESNP-PQALSKHSESKRDYSYDRSVQHI--QYPGFTVKRLKVAVVLNQ-EAPALK 385 Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 + +Q + ++ +++ A GI+++RGD ++++ + F+ Sbjct: 386 NWTPEQTR------QLTDLLNNAAGIDTQRGDNLSLSLLRFV 421 >gi|167576644|ref|ZP_02369518.1| flagellar MS-ring protein [Burkholderia thailandensis TXDOH] Length = 531 Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 136/537 (25%), Positives = 240/537 (44%), Gaps = 74/537 (13%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 +Y L+ E ++ + AL I +RI + + V S V +AR+ LAA+G+ ++ Sbjct: 34 NYKPLFGAREPVQLDDVVSALDAQRIPYRIHPDTGQVLVARSDVARARMMLAARGV-TAK 92 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + G E D+ + G + F+Q++ R LE E+A++I ++ + ARVH+ + SF Sbjct: 93 AAPGLEQIDQDDPLGTSQFVQDVRFRRGLESELAQSIATLDPVERARVHLSIAKSSSFVM 152 Query: 167 IGARPTASVMIRAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EM 222 + +A+ ++ + P + E A+ +LVA +VPNL G V+V+D G L+A ++ Sbjct: 153 MDGDKSAASVVLTLKPGARLAKEQIAAVINLVAGSVPNLAPGKVSVVDQHGAFLSARVDL 212 Query: 223 ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPD 281 + ++ G I + ++ N+ LA LG NFR +V A +N D ++ RE Sbjct: 213 DGDLTGND-EIAARFRDDVTRNVEDLLAPSLGPGNFRVSVTAVVNNDRVEETRE------ 265 Query: 282 SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKE------EQ 335 + + ++ +A R+E ++ A+ V ++ S+R V +P S + D Q Sbjct: 266 -QFGEAPKVMSEATRNEQNRDRVALGVPGSL---SNRPVDVPASGPDADSGSRRNATTRQ 321 Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395 Y+ N I +LE+LS+AVV+N ++ G+ + L I+ I+ + Sbjct: 322 FAYDRNITQI--KRGRGQLEKLSVAVVLNNA-VSPTKGKPWQPDQ----LRRIDDILRSG 374 Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455 GI+ +RGD + ++S+DF + D L + + AL L G LL L Sbjct: 375 LGIDKQRGDQLIVSSLDFAAPAPAEPWWKE---RDTLEQGGWYLTYALAALFGYLL---L 428 Query: 456 GLHALRRLHNIDDAKKG--------------EVGGKSILSPPPISSAVTTGLMPN--DNI 499 LR L + G E G P P + G M D++ Sbjct: 429 ARPMLRMLQQWMQHRYGAPPAAAPASRLQAPEGGDAQAALPAPDDARPPLGAMLPLLDDV 488 Query: 500 AL---DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 L DS + + H R+L E ER A+++++W R++ Sbjct: 489 ELPPADSGVEVLIGHLRSLS-------------------EKEPERVAEVVKQWIRND 526 >gi|254458688|ref|ZP_05072112.1| flagellar M-ring protein FliF [Campylobacterales bacterium GD 1] gi|207084454|gb|EDZ61742.1| flagellar M-ring protein FliF [Campylobacterales bacterium GD 1] Length = 570 Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 111/383 (28%), Positives = 201/383 (52%), Gaps = 25/383 (6%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 Y+ L+ L D +I L + I +++ DN + I VP +V K RI +A+ G+P + Sbjct: 51 EYEILFNSLSSEDAAKIVDQLEKDGIVYKLEDN-NIIKVPKDIVYKERITIASMGIPKNR 109 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 G+ELFD FG TSF Q + +RALEGE++RTI ++ I +A V + +P F Sbjct: 110 -GVGFELFD-TQEFGATSFDQNVKYLRALEGELSRTINALGPIESASVSLAIPKDTLFIA 167 Query: 167 IGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER 224 P+ASVM++ + K I++LVA+AVP + V +++S G+ L +E E Sbjct: 168 KQVDPSASVMVQLVEEQRLSPKQIRGIKNLVASAVPKMKASAVMLINSEGETL-GDEDEM 226 Query: 225 NILGKSLSIVQAIQHEIEM----NINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYD 279 +G+ ++ Q + + E I + ++ F+ G + + V E + Q YD Sbjct: 227 AQMGELSTVQQKFKTKEEKKRQSKIIQVISPFVGGEEKVVAQVTIEFDFSIQNSTSETYD 286 Query: 280 PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSD-RKVPLPRSLENTDKKEEQSNY 338 P++ V RS ++S+ ++ E P V + ++ + + ++ E +K +NY Sbjct: 287 PENVV-RSEQVSE--EKREGGSPAEIGGVPGTVSNIGPVQGLKSNQTNEKYEKNTGTTNY 343 Query: 339 EINTKSIATTHDNY-KLERLSIAVVVN---KGRLTEVLGRSADQGKI----DSYLAEINK 390 E+ K+++TT + +++R+S AV+V+ K +L + G+S D+ + +S L + Sbjct: 344 EVG-KTVSTTKSQFARIKRISAAVIVDGKYKFKL-DAEGKSTDELEYEPLQESDLDALAS 401 Query: 391 IVSAATGINSRRGDTITITSMDF 413 +V + GIN +RGD I++ ++ F Sbjct: 402 LVGRSIGINDQRGDQISVKNLQF 424 >gi|307546949|ref|YP_003899428.1| flagellar MS-ring protein [Halomonas elongata DSM 2581] gi|307218973|emb|CBV44243.1| flagellar MS-ring protein [Halomonas elongata DSM 2581] Length = 581 Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 114/430 (26%), Positives = 182/430 (42%), Gaps = 70/430 (16%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92 I + A + ++P Y LY L +D I L +I +R S G ++ VP V K Sbjct: 42 IAVVAALMLWASAPQYRVLYSNLSEADGGSIIAELDSRSIPYRFSQGGQALMVPGDQVHK 101 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 R+ LA QGLP N G EL + +FG++ F ++I R LEGE+AR+++S+ + A Sbjct: 102 LRLQLAEQGLPKGG-NVGLELMED-QAFGISQFAEQINYQRGLEGELARSMESLGPVAEA 159 Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVL 210 RVH+ + F + ASV++ V + A+ H+V+++VP+L VTVL Sbjct: 160 RVHLALAKDSVFVRRREPAKASVVLTLEPGRVLGKGQVNAVAHMVSSSVPDLAAEAVTVL 219 Query: 211 DSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 D G+LL+ + + G L V ++ I L LG R+ V A+L+ Sbjct: 220 DQNGRLLSRPDGGSLGLDGTQLDYVAEVERAYRQRIEAILTPILGRGKVRAQVTAQLDFS 279 Query: 270 TQQIREIVYDPDSKVERSIRLSKDAQRSETSQP--ESAVTVEQNMPHVS--DRKVPLPRS 325 R + A+R +QP E+AV Q ++ D +P + Sbjct: 280 -------------------RREETAERYTPNQPPNEAAVRSRQTSLDLNGDDLANGVPGA 320 Query: 326 LENTDKKEEQS----------------------------------------NYEINTKSI 345 L NT +S NYE++ + Sbjct: 321 LSNTPPGFAESPIATAPEDGEDAAADADQETNDTASQASQAQRRLSRDDVINYEVDRQVS 380 Query: 346 ATTHDNYKLERLSIAVVVN--KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403 H ++ERLS AVVV+ + + G D LA++ ++V A G + RG Sbjct: 381 HVEHQRGRIERLSAAVVVDYRQTPAEQPDGEPTAAPLDDDELAQVKRLVQQALGFSEARG 440 Query: 404 DTITITSMDF 413 D +T+ + F Sbjct: 441 DQVTVVNRPF 450 >gi|304414645|ref|ZP_07395721.1| flagellar MS-ring protein [Candidatus Regiella insecticola LSR1] gi|304283183|gb|EFL91591.1| flagellar MS-ring protein [Candidatus Regiella insecticola LSR1] Length = 532 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 132/547 (24%), Positives = 253/547 (46%), Gaps = 62/547 (11%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +S Y L+ E ++ L +I +R++ + I V + +G+AR+ LAA+ Sbjct: 16 LWRSSQSYTVLFGSQEQIPTTQVVEVLGSESIPYRVNPDNGQILVAENQLGRARMALAAK 75 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 G+ +++ GYEL DK G + FMQ + R+LEGE+A+++ ++ + ARV + M + Sbjct: 76 GI-TAALPVGYELMDKETMLGSSQFMQNVRYKRSLEGELAQSVMALDAVEYARVRLGMSE 134 Query: 161 MGSFRKIGARP--TASVMIRAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGK 215 SF I +P +ASV++R + P + E AI LV+ +VP + V V++ G+ Sbjct: 135 ASSF-VITTKPDSSASVILR-LKPRHQLTPEQVGAIIQLVSGSVPGMKASQVRVINQNGE 192 Query: 216 LLTANEMERN----ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ 271 LL+ N L + + +Q +E N+ L +G +N+R +V +L++ Sbjct: 193 LLSEGYQNSNNGLSTLKSGPELARKLQLAVEKNVANLLNPIVGANNYRISVTTQLDLSNI 252 Query: 272 QIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPHVSDRKVPLPRSLEN 328 + + Y D + L ++ + E+S E A+ + N P + P ++ N Sbjct: 253 EEKLERYGADPRT-----LDENVNQ-ESSSDERAMGIPVTLSNQPAAKN-NAQSPSTMLN 305 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 + + + Y+ + + + H +YKLE++++A+V+NK SA + L E+ Sbjct: 306 RSQSQRKFAYDRDIRHV--RHPSYKLEKMTVAIVLNK-------AASALEQWTTPQLDEL 356 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDI---LSRHFATVINALVF 445 ++ A GIN RGD++T+ + F T Q + + + A + A + Sbjct: 357 KRLAIDAAGINFDRGDSLTMNLITF---------TPQTEYEETPLPWWQEPAALRWAQMG 407 Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP------PPISSAVTTGLMP--ND 497 +G + FL + + ++ + S+ SP P ++A P ND Sbjct: 408 GIGLIAFFFLWFGVRPLIQRV--TREEQTSSTSVASPDQPQNLTPETTAAMGDAAPKIND 465 Query: 498 NIAL-DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW------A 550 L D + F +L S + +K S +++L E + R A+++++W Sbjct: 466 EKVLADVLPKSSFQEEDDLPSPASGLETKISHMQMLAYSETD--RVAEVIKQWINSNERT 523 Query: 551 RSEIEDR 557 R+E++ R Sbjct: 524 RAELDTR 530 >gi|58760481|gb|AAW82147.1| FliF [Stenotrophomonas maltophilia] Length = 545 Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 112/449 (24%), Positives = 200/449 (44%), Gaps = 15/449 (3%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 Q+F SL TR L L ++I V ++ F+ P LY L+ + L Sbjct: 17 QWFDRLQSLQITRRLGLMAMIAVAVVSVF---FWSQKPGMVPLYTGLDQKATAEATDLLR 73 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 A I F + I+VP + AR+ LA GL + S G+EL ++ FG++ F++ Sbjct: 74 AAQIPFALDPATGGITVPEKNLHDARLKLAGSGL-TDSGKLGFELMERDPGFGVSQFVES 132 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYK 186 ALE E++RTI ++ + +RVH+ +P +F + +ASV +R Sbjct: 133 ARYQHALETELSRTINTLRPVRDSRVHLAIPKPSAFTRQRDVASASVTLELRGGQQLERS 192 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN-- 244 +AI H+VAA++P+L VTV+D +G++L+ + + Q + E N Sbjct: 193 QVDAIVHMVAASIPDLAPERVTVVDQSGRMLSITDPNSEAAVNAAQFEQVRRQETSFNQR 252 Query: 245 INKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 I + L G V +++ T++ RE+ Y+ + + RS ++S++ + T P+ Sbjct: 253 IRELLEPMTGPGRVNPEVSVDMDFSVTEEAREL-YNGEPQKLRSEQMSENT--TSTPGPQ 309 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 N P + P K NYE++ T +++R+S+AV+V Sbjct: 310 GVPGATSNSPP-GQQAAPATAQTPTESSKNATRNYELDRTLQHTRQPAGRIKRVSVAVLV 368 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 + G+ + Q + L + +V A G N+ RGDT+++ + F+ + G Sbjct: 369 DNVPRAGANGKMSPQPLSAAELTRVEALVKQAVGFNAERGDTVSVMNAPFVRDTTPVEGP 428 Query: 424 V--QVSFMDILSRHFATVINALVFLVGTL 450 ++ ++ R + L L G L Sbjct: 429 AWWELPWVHDAGRMLLGAVVVLALLFGVL 457 >gi|167614819|ref|ZP_02383454.1| flagellar MS-ring protein [Burkholderia thailandensis Bt4] gi|257141404|ref|ZP_05589666.1| flagellar MS-ring protein [Burkholderia thailandensis E264] Length = 531 Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 114/428 (26%), Positives = 207/428 (48%), Gaps = 33/428 (7%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 +Y L+ E ++ + AL I +RI + + V S V +AR+ LAA+G+ ++ Sbjct: 34 NYKPLFGAREPVQLDDVVSALDAQRIPYRIHPDTGQVLVARSDVARARMMLAARGV-TAK 92 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + G E D+ + G + F+Q++ R LE E+A++I ++ + ARVH+ + SF Sbjct: 93 AAPGLEQIDQDDPLGTSQFVQDVRFRRGLESELAQSIATLDPVERARVHLSIAKSSSFVM 152 Query: 167 IGARPTASVMIRAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EM 222 + +A+ ++ + P + E A+ +LVA +VPNL G V+V+D G L+A ++ Sbjct: 153 MDGDKSAASVVLTLKPGARLAKEQIAAVINLVAGSVPNLAPGKVSVVDQHGAFLSARVDL 212 Query: 223 ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPD 281 + ++ G I + ++ N+ LA LG NFR +V A +N D ++ RE Sbjct: 213 DGDLTGND-EIAARFRDDVTRNVEDLLAPSLGPGNFRVSVTAVVNNDRVEETRE------ 265 Query: 282 SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKE------EQ 335 + + ++ +A R+E ++ A+ V ++ S+R V +P S + D Q Sbjct: 266 -QFGEAPKVMNEATRNEQNRDRVALGVPGSL---SNRPVDVPASGPDVDGGSRRNATTRQ 321 Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395 Y+ N I +LE+LS+AVV+N ++ G+ + L I+ I+ + Sbjct: 322 FAYDRNITQI--KRGRGQLEKLSVAVVLNNA-VSPTKGKPWQPDQ----LRRIDDILRSG 374 Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455 GI+ +RGD + ++S+DF + D L + + AL L G LL+ Sbjct: 375 LGIDKQRGDQLIVSSLDFAAPAPAEPWWKE---RDTLEQGGWYLTYALAALFGYLLLARP 431 Query: 456 GLHALRRL 463 L L++ Sbjct: 432 MLRMLQQW 439 >gi|157165014|ref|YP_001466462.1| flagellar MS-ring protein [Campylobacter concisus 13826] gi|112801613|gb|EAT98957.1| flagellar M-ring protein FliF [Campylobacter concisus 13826] Length = 565 Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 120/445 (26%), Positives = 215/445 (48%), Gaps = 25/445 (5%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH---YDNLYVKLEVS 58 A+L Q+ Q ++ SL + +I+ +S++LV L + S Y L+ + S Sbjct: 5 ALLHQISQIYQK-LSL-KQKIVAGSSIVLVVAFLVFLTLYKSKSDSFVGYSVLFENISPS 62 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 D I L++ I +++++ G+ I VP+S V K RI +A G+P S G+E+FDK Sbjct: 63 DSALIVDQLNKDGIKYKLANEGT-ILVPTSDVYKERIAVATLGIPKESK-IGFEIFDK-Q 119 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178 FG T Q + RALEGE+ARTI+S+S I A V I +P F + A PTAS+++ Sbjct: 120 EFGATDAEQRVKFQRALEGELARTIESLSSIQKATVRIAIPKESVFTERQALPTASIVVE 179 Query: 179 AINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLL--TANEMERNILGKSLSI 233 + P V +A+ I++LVAA+V NL +V +++ G L E + + + + + Sbjct: 180 -LKPGVSLNAKQIFGIKNLVAASVTNLSTENVKIVNQDGVALGDEDGEFDSDAIAQQIRY 238 Query: 234 VQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292 + ++ E I LA + G D + V + + D + + VYDP++ V + Sbjct: 239 KREFENNYEQKIVNVLAPIVGGADKVVAKVNIDFDFDKKDTKSEVYDPNNVVRSESNIE- 297 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSL-ENTDKKEEQSNYEINTKSIATTHDN 351 ++ + S P V + ++ + +L E +K +Q+NYEI+ K Sbjct: 298 --EKRQGSAPNEVGGVPGAVSNIGPVQGLDDSTLKEQYNKSSQQTNYEISKKVTNVKGQF 355 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKID------SYLAEINKIVSAATGINSRRGDT 405 + R+S AVV++ ++ G+++ I ++ + G N RGD Sbjct: 356 ASINRVSAAVVIDGLYQSKKDKDGKPTGELEFAPLTKEQRESITNLIKQSIGYNQNRGDE 415 Query: 406 ITITSMDFLENQLFNSGTVQVSFMD 430 +++ + +F + ++G FM+ Sbjct: 416 VSLDNFEFKTGKDVSTGEKMDGFMN 440 >gi|21672359|ref|NP_660426.1| flagellar MS-ring protein [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008478|sp|Q8KA45|FLIF_BUCAP RecName: Full=Flagellar M-ring protein gi|21622963|gb|AAM67637.1| flagellar M-ring protein [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 556 Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 107/438 (24%), Positives = 209/438 (47%), Gaps = 46/438 (10%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 L FFK+ +R+LI+ + ++ ++ ++ + SP Y LY L D I Sbjct: 21 LSYFFKN------SRVLII--LFVLAVITTVSISMWRKSPDYQVLYNNLSNEDGEMIIDQ 72 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L++ I +++S++ + VP V + R+H + P + GYE+ DK FG++ F Sbjct: 73 LNQMQIPYKLSEDSGQLLVPKDKVYELRLHFSENNSPHR--DIGYEILDK-ERFGVSQFG 129 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSV 184 ++I RALEGE+ARTI+ I+ + A++HI P F + +P+ SV+ +++ Sbjct: 130 EQINYQRALEGELARTIEKINVVKNAKIHIAFPKNSLFLEDKKKPSVSVILNLKSNQGLD 189 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK-SLSIVQAIQHEIEM 243 + AI HL+++++ +L + ++T++D GKLL + + N + L + ++ Sbjct: 190 HSQVNAILHLISSSICDLSIENITIIDQFGKLLNNSSLGLNQIDDLKLRYSEEVESRYRN 249 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD------------SKVERSIRLS 291 I L LG +N + V A++N ++ + + Y P+ S V I Sbjct: 250 RIKNILEPLLGFNNVYAQVTAQINFNSHEKTQEKYTPNTNYKNQAIRSRQSTVNDKINNR 309 Query: 292 KDAQRSETSQPESAVTVEQ--NMPHVSDRKVPLPRSLENTDKK----------EEQSNYE 339 K+ + + P+++ + + N S++K+ N D ++ NYE Sbjct: 310 KEENKPDELFPQTSFSSNKDLNSTTYSNKKIKKSIIQNNQDNNILHSNSAISHDDTINYE 369 Query: 340 INTKSIATTHDNYKLERLSIAVVVN--KGRLTEVLGRSADQGKIDSYLAEINKIVSAATG 397 +N T + +++RLS AV+VN K + + + + +Q + +I +V A G Sbjct: 370 LNHSLSHTKMNIGEIKRLSAAVIVNFVKDKNGKSVPINVEQ------IKKIKNLVREAIG 423 Query: 398 INSRRGDTITITSMDFLE 415 + RGD++ + + F + Sbjct: 424 YSKVRGDSVYVVNESFFQ 441 >gi|83718135|ref|YP_438373.1| flagellar MS-ring protein [Burkholderia thailandensis E264] gi|83651960|gb|ABC36024.1| flagellar M-ring protein FliF [Burkholderia thailandensis E264] Length = 551 Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 114/428 (26%), Positives = 207/428 (48%), Gaps = 33/428 (7%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 +Y L+ E ++ + AL I +RI + + V S V +AR+ LAA+G+ ++ Sbjct: 54 NYKPLFGAREPVQLDDVVSALDAQRIPYRIHPDTGQVLVARSDVARARMMLAARGV-TAK 112 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + G E D+ + G + F+Q++ R LE E+A++I ++ + ARVH+ + SF Sbjct: 113 AAPGLEQIDQDDPLGTSQFVQDVRFRRGLESELAQSIATLDPVERARVHLSIAKSSSFVM 172 Query: 167 IGARPTASVMIRAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EM 222 + +A+ ++ + P + E A+ +LVA +VPNL G V+V+D G L+A ++ Sbjct: 173 MDGDKSAASVVLTLKPGARLAKEQIAAVINLVAGSVPNLAPGKVSVVDQHGAFLSARVDL 232 Query: 223 ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPD 281 + ++ G I + ++ N+ LA LG NFR +V A +N D ++ RE Sbjct: 233 DGDLTGND-EIAARFRDDVTRNVEDLLAPSLGPGNFRVSVTAVVNNDRVEETRE------ 285 Query: 282 SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKE------EQ 335 + + ++ +A R+E ++ A+ V ++ S+R V +P S + D Q Sbjct: 286 -QFGEAPKVMNEATRNEQNRDRVALGVPGSL---SNRPVDVPASGPDVDGGSRRNATTRQ 341 Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395 Y+ N I +LE+LS+AVV+N ++ G+ + L I+ I+ + Sbjct: 342 FAYDRNITQI--KRGRGQLEKLSVAVVLNNA-VSPTKGKPWQPDQ----LRRIDDILRSG 394 Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455 GI+ +RGD + ++S+DF + D L + + AL L G LL+ Sbjct: 395 LGIDKQRGDQLIVSSLDFAAPAPAEPWWKE---RDTLEQGGWYLTYALAALFGYLLLARP 451 Query: 456 GLHALRRL 463 L L++ Sbjct: 452 MLRMLQQW 459 >gi|114566385|ref|YP_753539.1| flagellar M-ring protein FliF [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337320|gb|ABI68168.1| flagellar M-ring protein FliF [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 540 Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 108/388 (27%), Positives = 196/388 (50%), Gaps = 35/388 (9%) Query: 48 YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 Y+ LY +L+ D ++I+ L E + +++ + G++I VP + K R+ LA++ LP + Sbjct: 54 YEVLYTELDKKDASQITAKLDEGKVPYKLENGGTTILVPPDLKDKTRLTLASENLPRGET 113 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 G+ELF + + FG T +++ AL+GE+AR+IQS+ + AA+V++ +P+ F Sbjct: 114 --GFELFQE-SKFGETQVDKKVKYQVALQGELARSIQSLDKVKAAKVNLALPESTLFSDN 170 Query: 168 GARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-E 221 P ASV++ ++P K + I +LVA +V L +V ++D G L++ N Sbjct: 171 EELPKASVVVNTREEEKLSP---KEIQGIINLVANSVDKLTTENVVIVDQHGNLVSENLP 227 Query: 222 MERNILGKSLSIVQAIQHEIEMNINKALAAF----LGVDNFRSAVVAELNMDTQQIREIV 277 M + +++ A++ + E A+ + LG +N V AEL+ D ++ ++ + Sbjct: 228 MANGDISETVKWQMAMKRQYEKEKQDAIQSMLDKSLGQNNSVVRVNAELDFDNKEQKDEL 287 Query: 278 YDPD--SKVERSIRLSKDAQRSETSQPESAVT-VEQNMPHVSDRKVPLPRSLENTDKKEE 334 Y D RS + K++ ++T+QP V + N+P ++V + DK + Sbjct: 288 YSHDDAGPFVRSEEIKKESG-TDTTQPVVGVPGTDTNIPQY--QEVDAAGGVSTYDKSSK 344 Query: 335 QSNYEINT--KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV 392 NYEIN K + K + L++AV+VN + TE L + + +A I IV Sbjct: 345 IRNYEINKTEKVTKVAQGDVKYDYLTVAVLVN-SKATEPLKLGETE---EEKIATIRNIV 400 Query: 393 SAATGINSRRG-------DTITITSMDF 413 + A G+ R D I++ +DF Sbjct: 401 ATACGLRENRKDESVRLEDNISVAFVDF 428 >gi|187935660|ref|YP_001885041.1| flagellar MS-ring protein [Clostridium botulinum B str. Eklund 17B] gi|187723813|gb|ACD25034.1| flagellar M-ring protein FliF [Clostridium botulinum B str. Eklund 17B] Length = 520 Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 117/417 (28%), Positives = 199/417 (47%), Gaps = 36/417 (8%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 L + FK T + +I I S + V I+ + + +S Y L+ L+ D I Sbjct: 11 LWEKFK--TQSKKIKIAIFVSCVAV-IIAIASTAIYTSSNKYQVLFSNLDPKDAQTILAK 67 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L+E + +I G +I VP+ V + R+ LA + L S SS GYEL D +SFG+T Sbjct: 68 LNEQKVTTKIQ--GDTILVPNDKVDQLRLELAPE-LKSGSS--GYELMDSGSSFGMTDEE 122 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS--V 184 ++ ++R EGE+ +TI+S S I +ARVHI F K A+V + S Sbjct: 123 FKVKKLRMQEGELEKTIKSFSQIESARVHITPSTDSVFVKESTPGKAAVYLELKTGSEIT 182 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-------EMERNILGKSLSIVQAI 237 ++I LV+ + N+ ++ V+D LLTAN M L K S+ + Sbjct: 183 KDQVKSIVALVSGSTENVPKENIEVIDDKMNLLTANLNDDENEMMSSESLDKQYSLEKNY 242 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + +++ I L +G D ++ V +L+ D++Q + V DP+ KV S + K+ + Sbjct: 243 ESKLQKEIVSLLEPVIGKDKVKATVNVDLDFDSKQQTQTVLDPN-KVVVSQQTIKEVNNT 301 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 + + S V+ N+ + +D + N+ ++E+++NYEI +++R+ Sbjct: 302 DANGNISESPVDNNISNTTD---DTNNTKSNSSREEQKNNYEIGKTETKVISAPGEVKRM 358 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAE-INKIVSAATGINSRRGDTITITSMDF 413 + +VVV+ G +D+ + I VS A G NS RGD I++ M+F Sbjct: 359 TASVVVD--------------GNLDAATQQAIENAVSNAIGFNSVRGDQISVLGMNF 401 >gi|226225737|ref|YP_002759843.1| flagellar M-ring protein [Gemmatimonas aurantiaca T-27] gi|226088928|dbj|BAH37373.1| flagellar M-ring protein [Gemmatimonas aurantiaca T-27] Length = 540 Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 87/274 (31%), Positives = 149/274 (54%), Gaps = 15/274 (5%) Query: 18 GRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS 77 G + +I+A ++V ++F +R+ P LY + V V ++ L+EA I + + Sbjct: 14 GARQAMIIAVGVVVTALVFGVSRW-ATKPTMVPLYADVPVEQVKAMTDKLTEAGITYELD 72 Query: 78 DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137 GS+I V S+ + +AR+ LAA +P +S G ELFDK ++G+T F Q++ RALEG Sbjct: 73 RTGSTIMVQSADLARARVDLAAGTVP-NSGRPGLELFDK-PTWGMTDFTQKVNYRRALEG 130 Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIR---HL 194 E+ RTI + + + +VH+ + D F++ RP+ + + A+N S+ AEA+R L Sbjct: 131 ELERTISKMKDVKSVKVHLAIEDDQLFKQ-NERPSKASVTLAMNNSIAPRAEAVRGIASL 189 Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERN-----ILGKSLSIVQAIQHEIEMNINKAL 249 VA++V L+ VT++D G+ LT ME + + + LS+ + + +E +K L Sbjct: 190 VASSVGGLEPEHVTIVDERGEALT---MEDDGSMAGLTSRQLSVQREAESYLEQKADKLL 246 Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK 283 ++ +G N R V A +N D + DPD + Sbjct: 247 SSLVGSGNARVQVSASMNFDKVERTVQAVDPDRQ 280 >gi|283853241|ref|ZP_06370492.1| flagellar M-ring protein FliF [Desulfovibrio sp. FW1012B] gi|283571346|gb|EFC19355.1| flagellar M-ring protein FliF [Desulfovibrio sp. FW1012B] Length = 546 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 110/433 (25%), Positives = 203/433 (46%), Gaps = 38/433 (8%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++L+Q++ + ++ R + LA + + ++ + + +N LY + D +R+ Sbjct: 9 FEKLIQYWSNRSAAQRILLGGLAGSMAIAFLVMV---YLLNQAEMRVLYTNMAPEDASRV 65 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L + + + +NG+++ VP+ V + R+ +A +G+ G+ELFD++ G T Sbjct: 66 VELLKASKTPYELRENGTTVLVPAEAVYEQRLKVAGEGV-MHGQGVGFELFDQLK-VGQT 123 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAIN 181 F+Q I RAL+GE++RTI + ARVH+V+P F + + +ASV+ ++ Sbjct: 124 DFVQRINYSRALQGELSRTITEFPQVEKARVHLVLPQKSLFIEEQKKASASVVLTLKRGQ 183 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ---AIQ 238 K + I +LVA +V L +T+ D+TG+ L + + G S + + + Sbjct: 184 KLDAKQLQGIVNLVAMSVEGLTPEHITITDTTGQSLYQPRADGGLDGLSTTQFEFKNTFE 243 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 +E I + L +G + +L+ + +R+ +YDP+ V RS + S+++ Sbjct: 244 ANLENRIEQLLTPIVGPGRALAKANVDLDFSQRTVRKELYDPNVTVVRSEQKSEESTSGS 303 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPR-------SLENTDKKEEQ---SNYEINTKSIATT 348 + T P VP E+T K Q +NYEIN + Sbjct: 304 AAVDAGGATT---TPRGGGAAVPNSNFRGDGYSGTESTQKSSRQNSTTNYEINKEEQNVV 360 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLG--------RSADQGKIDSYLAEINKIVSAATGINS 400 L+R SIAV+V+ G +V G R A++ L I ++V+ A G++ Sbjct: 361 TPVGDLKRQSIAVIVD-GTYEKVEGKNTFTFVPRKAEE------LERIKQVVARAAGLDP 413 Query: 401 RRGDTITITSMDF 413 RGD I ++S +F Sbjct: 414 ARGDEIQVSSFEF 426 >gi|330862343|emb|CBX72503.1| hypothetical protein YEW_GP28340 [Yersinia enterocolitica W22703] Length = 519 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 134/556 (24%), Positives = 251/556 (45%), Gaps = 72/556 (12%) Query: 17 LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76 +G IL+ ++I + +S Y L+ E V ++ L I +RI Sbjct: 1 MGAAAILVTGAIIF---------SLWRSSQGYTALFGSQEHIPVTQVVEVLDGEAIAYRI 51 Query: 77 SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136 + + I V + +G+A I LAA+G+ +++ +GYEL D+ G + F+Q + R+LE Sbjct: 52 NPDNGQILVAENQLGRACILLAAKGI-TATLPTGYELMDQETMLGSSQFIQNVRYKRSLE 110 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR--PTASVMIRAINPSVYKSAE--AIR 192 GE+A++I +++ + ARVH+ M + SF I R +ASV++R K+ + AI Sbjct: 111 GELAQSIMALTSVDYARVHLGMSEASSF-AISNRSESSASVILRLKYGQTLKADQVGAIV 169 Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINKA 248 LVA ++P + +V V+D G+LL+ AN + + +Q E +I Sbjct: 170 QLVAGSIPGMKAANVRVVDQHGELLSEAYQANGKGMTNVKNGAELAHYLQSTTEKSIANL 229 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI-------RLSKDAQRSETSQ 301 L++ +G +N+R +V +L++ S+VE ++ R+S + + E Sbjct: 230 LSSVVGANNYRISVATQLDL-------------SRVEETLERYGAEPRVSDENIQQENGN 276 Query: 302 PESAVTVE---QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 + A+ + N P + P ++ + + Q Y + H +KLE+++ Sbjct: 277 EDMAMGIPGSLSNQPAAQPKNANAPAAM---SRSQAQRKYAYDRDIRHVRHPGFKLEKMT 333 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 +AV++NK A + L E+ +++ A GI+++RGD++T+ + F L Sbjct: 334 VAVILNK-------SAPALEKWTPEQLNELKRLIEDAAGIDAKRGDSLTLNMLAFTVPTL 386 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD-----AKKGE 473 + + + D + + + + + LL L A RL DD A Sbjct: 387 IDEPVI-AWWQDATTFRWVEIAGIGLLSLLFLLFGVRPLMA--RLSRRDDKHSALAMAEN 443 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 + G ++ + SSA T ++P + F NL + + K S L+ L Sbjct: 444 IDGLNVTNTTSESSATTEPMLPGSS----------FKEDDNLPPQGSGLEIKISHLQQLA 493 Query: 534 MIEINEERFAKILRKW 549 E ER A+++++W Sbjct: 494 QSET--ERVAEVIKQW 507 >gi|239815256|ref|YP_002944166.1| flagellar M-ring protein FliF [Variovorax paradoxus S110] gi|239801833|gb|ACS18900.1| flagellar M-ring protein FliF [Variovorax paradoxus S110] Length = 502 Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 110/411 (26%), Positives = 193/411 (46%), Gaps = 37/411 (9%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 + F++ T R RI ++ V+ + ++ AA ++V Y L+ L+ D ++ L Sbjct: 1 MNFWQGLTQ--RARIGLVGGVLAI-VLAMSAAAWWVFHTEYQVLFADLKPQDAQAMTTEL 57 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 I +R+ D+G+SI V + V RI L + LP + G ELF+ + FG+T F Q Sbjct: 58 DRLKIPYRLGDSGTSILVDKATVHATRIKLMGKELPLQGT-VGLELFNNTD-FGMTEFAQ 115 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187 +I RAL+GE+ RTIQS++ + RV + +P+ G F++ ++ AS+ + ++ Sbjct: 116 KINYQRALQGELTRTIQSLAQVREVRVLLALPEQGLFKQATSKAKASITLTLRQGQTLRA 175 Query: 188 AE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNI 245 + ++ LVAAAVP + DVT++DS G LT E L S + + ++ + E + Sbjct: 176 EQVTGVQRLVAAAVPGMATQDVTIVDSHGVALTRAEGSSGELETSSARLD-LKRDTEAYL 234 Query: 246 NKALAAFL----GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS-IRLSKDAQRSETS 300 ++ +AA L G ++V LNMD QIR D RS ++ + R + Sbjct: 235 SRKVAAVLDRSFGAGQALASVDVMLNMD--QIRTTTEDVLPAATRSGLQSTGVVVRERET 292 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 ++ ++ V PRS + Y + + + R+ + Sbjct: 293 LRDAGAALDARASDVGG-----PRS----GSAQRDVEYAVGRRVEQVVSQQGSIRRIQVV 343 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 VV K + D + D ++ K+++AA G + RGDTI + S+ Sbjct: 344 AVVRK---------TLDAAQED----QLRKVIAAAAGASIERGDTIVVQSL 381 >gi|171321207|ref|ZP_02910177.1| flagellar M-ring protein FliF [Burkholderia ambifaria MEX-5] gi|171093517|gb|EDT38687.1| flagellar M-ring protein FliF [Burkholderia ambifaria MEX-5] Length = 495 Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 114/418 (27%), Positives = 190/418 (45%), Gaps = 52/418 (12%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + +L +F +G+ R R LA + + A + P Y L L+ D + Sbjct: 5 ISRLGAYFLAGS---RARQFALAGTLTAVVGCAGLAAWLALRPSYQILARDLKPQDAAAV 61 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + L + I FR ++ ++I VP++ AR+ L + L +G+ELF++ + FGLT Sbjct: 62 AAQLDKEKIPFRYDESTAAILVPANDARAARVRLTSADL-RLQGVAGFELFNQ-SDFGLT 119 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----R 178 F Q++ RAL+GE+ARTI ++ I ARVH+ +P+ FR+ RP ASV + Sbjct: 120 EFAQKVNYQRALQGELARTIATLDAIELARVHLSLPEASLFRRDRGRPKASVALFVRDGH 179 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQ 238 A+ P V K I+ LVAAAVP + DV+VL+ +G +A+ ++ ++ A++ Sbjct: 180 ALEPDVVKG---IQRLVAAAVPEMSAADVSVLNQSGA--SADARGADVDDPKFALKNAVE 234 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 E I +A G R+ V + ++D QIR R L++ A + Sbjct: 235 QRYEHKILAQIAPIAGAG--RATVSVDASLDFDQIR---------TTRESGLTQSA--AN 281 Query: 299 TSQPESAVT--VEQNMPHVSDRKVPLPRS--LENTDKKEEQSNYEINTKSIATTHDNYKL 354 P A T P+ +P R+ +E + E+S +I + Sbjct: 282 PGNPPGAPTHSATAGWPNAGLPPLPGARTAPIEPETARSERSVEQI-------VRSPGAI 334 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 +LS+ +V++ E R + IVSA+ G + RGDT+ I + D Sbjct: 335 RKLSVGIVLDDTMTPERATR-------------LRDIVSASIGFDPARGDTLAIYTPD 379 >gi|312879583|ref|ZP_07739383.1| flagellar M-ring protein FliF [Aminomonas paucivorans DSM 12260] gi|310782874|gb|EFQ23272.1| flagellar M-ring protein FliF [Aminomonas paucivorans DSM 12260] Length = 524 Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 117/404 (28%), Positives = 181/404 (44%), Gaps = 50/404 (12%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + P Y+ L+ LEV D I L E I FR ++I +P V + R+ LA QG Sbjct: 43 WAGRPAYEPLFSGLEVEDQASIVAYLKEQKIPFRNDPAANAILLPREKVYETRLALAQQG 102 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP G+ELFD+ G++ F Q++ RALEGE+ARTI I + ARV+IV+P+ Sbjct: 103 LPKGGV-VGFELFDQ-PKMGMSDFQQKVAYSRALEGELARTIGQIEAVKFARVNIVIPEQ 160 Query: 162 GSFRKIGARPTASVMIRAINPSV--YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + TASV++R + + I HLVA +V L+ DVTV+D+ GK+L+ Sbjct: 161 RLFLEQQQPSTASVLVRLKEGQEIGQEQVKGIVHLVARSVEGLNPEDVTVVDTAGKVLSD 220 Query: 220 NEMERNIL------GKSLSIVQ-----AIQHEIEMNINKALAAFLGVDNFRSAVVAELNM 268 + +++ G+++S VQ + E+E + L G V +L+ Sbjct: 221 LIQDDSLIYMSGSDGRAVSSVQRELERQQEQELERKVRLMLEKVFGPGKAVVRVRVDLDF 280 Query: 269 DTQQI--REIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSL 326 D + +E + P+ K RS+ + ES V +P + Sbjct: 281 DKKSTSRKEFIPGPN---------GKGVVRSQQNTEESYVGPGMPPGGAPGTTTNIPGYV 331 Query: 327 ENT--------DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ 378 NT ++ + +N++I T+ + RLS +V+V+ L Q Sbjct: 332 VNTGTGGNVEYNRTDTVTNFDITTQESQQVATPGAIRRLSASVLVDG-----TLNAQQTQ 386 Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDF---LENQLF 419 DS V+AA G N RGD + I M F L +QL Sbjct: 387 SLKDS--------VAAAIGFNQLRGDQLVIQGMKFDTTLADQLL 422 >gi|332558480|ref|ZP_08412802.1| FliF [Rhodobacter sphaeroides WS8N] gi|2494549|sp|Q53151|FLIF_RHOSH RecName: Full=Flagellar M-ring protein gi|1419203|emb|CAA67251.1| FliF protein [Rhodobacter sphaeroides] gi|332276192|gb|EGJ21507.1| FliF [Rhodobacter sphaeroides WS8N] Length = 570 Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 120/441 (27%), Positives = 201/441 (45%), Gaps = 48/441 (10%) Query: 3 ILDQLLQFF-KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 +LDQ+ +F + G ILILA +L +A + P LY L ++ Sbjct: 24 MLDQIRRFGDQPGLRRAMPAILILAVTVLA-----LAGWILLREPARVTLYPGLPEAEKA 78 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 R+ +L+ I I + ++VP + +AR+ LAAQGLP + L D G Sbjct: 79 RVIDSLTGGGIAAVIDERTGEVAVPGAEYHRARMLLAAQGLPQGLPDGNALLSDL--PMG 136 Query: 122 LTSFMQEITRVR-ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 TS E R+R A E ++AR+I IS + AARVH+ +P+ +F + P ASV ++ + Sbjct: 137 -TSKSVETARLRQAQELDLARSITEISAVSAARVHLALPERSAFLRESQPPRASVFLQIV 195 Query: 181 NPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQ 238 A EAI +LV+++VP + DVTV+D G+LL+ + +L + +Q Sbjct: 196 PGRTLDGAQVEAIVNLVSSSVPGMARQDVTVVDQMGRLLSRGSDDPAVLLND----RQLQ 251 Query: 239 HEIEMN------INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292 H +++ I L G N V +++ Q+IRE DPD R+ L++ Sbjct: 252 HRVQLETLYRNRIESLLTPIAGPGNLAVQVTIDMDFTRQEIREEQVDPD----RTALLAE 307 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE---------------NTDKKEEQSN 337 +Q ET+ P++ + +P P +LE + + N Sbjct: 308 QSQIEETADPQA-----RGIPGAVSNSPPPEAALEAGAPPTAAGEAAAPMRSRSQNSTRN 362 Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL--AEINKIVSAA 395 +E++ K T ++ R+S AVVV +A + A++ ++ +A Sbjct: 363 FEVSRKVETTLPATARIARVSAAVVVRAQPQPAATDPAAPPPPLLPEALKADLERLTRSA 422 Query: 396 TGINSRRGDTITITSMDFLEN 416 G ++ RGD +TIT+ FL+ Sbjct: 423 VGFDADRGDVVTITAQPFLDT 443 >gi|315452715|ref|YP_004072985.1| Flagellar basal-body M-ring protein FliF [Helicobacter felis ATCC 49179] gi|315131767|emb|CBY82395.1| Flagellar basal-body M-ring protein (FliF) [Helicobacter felis ATCC 49179] Length = 567 Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 117/428 (27%), Positives = 207/428 (48%), Gaps = 34/428 (7%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 +Y L+ ++ SD + L + I ++I + +I +P + + RI LA+QG+P +S Sbjct: 52 NYGVLFEGMDNSDNALVLQYLQQKQIPYKIPKD-DTILIPKDKIYEERIALASQGIPKTS 110 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 GYE+FD FG T F Q I +RA+EGE++RTI+S++ I A VHI +P F Sbjct: 111 K-VGYEIFD-TKDFGATDFDQNIKYIRAIEGELSRTIESLTPIDKASVHIAIPKDSVFVS 168 Query: 167 IGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--- 220 PTASVM++ I P++ K I++L+AA+VP L + +V +++ G+ L + Sbjct: 169 REIPPTASVMLK-IKPNMRLLPKQILGIKNLIAASVPKLTVENVKLVNENGEPLGEDDEL 227 Query: 221 EMERNILGKSLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYD 279 + + + L Q ++ +E I+ LA + G D + V AE + ++ + +D Sbjct: 228 DTTKELAQAQLHYKQNFENLLESKISNILAPIVGGRDKVVAKVSAEFDFSQKKSTKETFD 287 Query: 280 PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYE 339 P++ V + + + Q V N+ V + V + E +K +NYE Sbjct: 288 PNNVVRSEQSMEEKREGYPKKQVGGVPGVVSNIGPV--QGVANDQLKEKYEKSTNTTNYE 345 Query: 340 INTKSIATTHDNYK-LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE----INKIVSA 394 + K+++ + L RL+ AVVV+ GR +V + + AE IN +V Sbjct: 346 VG-KTVSEIKGEFGVLTRLNAAVVVD-GRYKKVDKNGTETIEYVPLSAEEMDKINALVKQ 403 Query: 395 ATGINSRRGDTITITSMDFLENQLFNSGTVQV-------SFMDILSRHFATVINALVFL- 446 A G + RGD + +++ + FN+ T + F++ R+ + +L Sbjct: 404 AIGYSQSRGDAVAVSNFE------FNAKTAKYVPISAYEKFVNTTERYLGPFSSLFKYLI 457 Query: 447 VGTLLVTF 454 +G +L F Sbjct: 458 IGLILYVF 465 >gi|221639466|ref|YP_002525728.1| Flagellar M-ring protein [Rhodobacter sphaeroides KD131] gi|221160247|gb|ACM01227.1| Flagellar M-ring protein [Rhodobacter sphaeroides KD131] Length = 561 Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 120/442 (27%), Positives = 201/442 (45%), Gaps = 48/442 (10%) Query: 2 AILDQLLQFF-KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 +LDQ+ +F + G ILILA +L +A + P LY L ++ Sbjct: 14 GMLDQIRRFGDQPGLRRAMPAILILAVTVLA-----LAGWILLREPARVTLYPGLPEAEK 68 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 R+ +L+ I I + ++VP + +AR+ LAAQGLP + L D Sbjct: 69 ARVIDSLTGGGIAAVIDERTGEVAVPGADYHRARMLLAAQGLPQGLPDGNALLSDL--PM 126 Query: 121 GLTSFMQEITRVR-ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 G TS E R+R A E ++AR+I IS + AARVH+ +P+ +F + P ASV ++ Sbjct: 127 G-TSKSVETARLRQAQELDLARSITEISAVSAARVHLALPERSAFLRESQPPRASVFLQI 185 Query: 180 INPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI 237 + A EAI +LV+++VP + DVTV+D G+LL+ + +L + + Sbjct: 186 VPGRTLDGAQVEAIVNLVSSSVPGMARQDVTVVDQMGRLLSRGSDDPAVLLND----RQL 241 Query: 238 QHEIEMN------INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 QH +++ I L G N V +++ Q+IRE DPD R+ L+ Sbjct: 242 QHRVQLETLYRNRIESLLTPIAGPGNLAVQVTIDMDFTRQEIREEQVDPD----RTALLA 297 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE---------------NTDKKEEQS 336 + +Q ET+ P++ + +P P +LE + + Sbjct: 298 EQSQIEETADPQA-----RGIPGAVSNSPPPEAALEAGAPPTAAGEAAAPMRSRSQNSTR 352 Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL--AEINKIVSA 394 N+E++ K T ++ R+S AVVV +A + A++ ++ + Sbjct: 353 NFEVSRKVETTLPATARIARVSAAVVVRAQPQPAATDPAAPPPPLLPEALKADLERLTRS 412 Query: 395 ATGINSRRGDTITITSMDFLEN 416 A G ++ RGD +TIT+ FL+ Sbjct: 413 AVGFDADRGDVVTITAQPFLDT 434 >gi|167041778|gb|ABZ06520.1| putative Secretory protein of YscJ/FliF family protein [uncultured marine microorganism HF4000_093M11] Length = 461 Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 120/422 (28%), Positives = 198/422 (46%), Gaps = 21/422 (4%) Query: 5 DQLLQF--FKSGTSLGRTRILILASVILVPIMLFMAARFFV-NSPHYDNLYVKLEVSDVN 61 D LQF F SL + RI ILA++ + I++ M + FV N + L+ +E D Sbjct: 10 DVRLQFQDFFGALSLPK-RITILAALGI--ILIGMVSMIFVANRSSWAPLFSNVEPGDAA 66 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L E I + ++ G +I V V AR+ LA + + S +LF S G Sbjct: 67 AIVEKLQENQIPYMLAPGGRTIMVEPHRVDHARLTLAKEKVLPGSGVGFLDLF-ATPSLG 125 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 T F Q + A EGE+AR I +I+ + +A+V + +P F PTA++ + + Sbjct: 126 ETEFQQGVKFRVAQEGELARLISTINVVKSAKVSLAIPQKTLFSDNQVEPTAAIALNLTS 185 Query: 182 PSV-YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK---SLSIVQAI 237 K E I HLVA+AV L +V + D TG LL+ + + GK + S + Sbjct: 186 SGASRKQIETIVHLVASAVEGLSPRNVKITDQTGTLLSRGISDDSAGGKMNDNYSYKSRL 245 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + E+E + + + +G D R V A L D + I+E + DPD S ++ ++ Sbjct: 246 EKELEAKVVRQIEEVVGKDRVRVNVSATLRFDRRTIKEQLIDPDQTSVVSEQIVDESSTG 305 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 S P V N+P + R+ ++ KK N+E + + I ++ RL Sbjct: 306 TRSIPVGPAGVTTNLPEATGREAA---TVSEFSKKNSTRNFESSRREIILESAVGEVVRL 362 Query: 358 SIAVVVNKGRLTEVLGRSADQ-GKIDSYLAEINK-----IVSAATGINSRRGDTITITSM 411 S++V+++ R +++L S + G+ ++ E K +V AA G N RGD + + +M Sbjct: 363 SVSVLLDN-RRSQILDESGNSLGRTNTPWTEGEKETIIGLVKAAMGYNEERGDRVFVGNM 421 Query: 412 DF 413 F Sbjct: 422 PF 423 >gi|260893875|ref|YP_003239972.1| flagellar M-ring protein FliF [Ammonifex degensii KC4] gi|260866016|gb|ACX53122.1| flagellar M-ring protein FliF [Ammonifex degensii KC4] Length = 498 Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 109/396 (27%), Positives = 179/396 (45%), Gaps = 45/396 (11%) Query: 24 ILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSI 83 ++A + +P+ L +Y L+ L D + L E + +R++D G++I Sbjct: 34 LIACCVFLPLYLAQL--------NYAPLFKGLRPEDAGAVVQKLEEMKVPYRMTDGGTTI 85 Query: 84 SVPSSMVGKARIHLAAQG-LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 VP V K R LAA+G LP + G+ELFDK G+T F +++ RAL+ E+ RT Sbjct: 86 LVPKDQVYKVRAELAAKGALPGA--GKGFELFDKTR-LGITDFEEQVNYQRALQEELRRT 142 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVP 200 I G+ ARVH+V+P F +P+ASV+ ++ + + E I LV+ AV Sbjct: 143 ILQFDGVEDARVHLVLPPRSPFVTEQPKPSASVVLKLKPLEKLKPEQVEGIVALVSGAVQ 202 Query: 201 NLDMGDVTVLDSTGKLLTANEM--ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNF 258 L DV V+D+ G++LT E + +V A + E+E + L LG Sbjct: 203 GLKPEDVRVIDTRGEVLTPPTQGGEVGAVRNQQELVLAFERELERRVKNLLDQILGPG-- 260 Query: 259 RSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDR 318 ++AV+ + D + + P +V S + +E ++A V P Sbjct: 261 KAAVMVNADFDFSRREVVTVLPQGQVPVS-----EHTLTEQGAAQAAAGVAPTYPAGGA- 314 Query: 319 KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ 378 +N K+E NY++ + +L RL+ +VVV+ Sbjct: 315 ------GGQNYSKQETTRNYQVGEQREKVIEVPGRLRRLTASVVVD-------------- 354 Query: 379 GKIDSY-LAEINKIVSAATGINSRRGDTITITSMDF 413 G +D + +I +V+ A G N +RGD IT+ S F Sbjct: 355 GNLDPVTMQKIQNLVAGALGYNPQRGDQITVDSFTF 390 >gi|332531123|ref|ZP_08407037.1| flagellar M-ring protein FliF [Hylemonella gracilis ATCC 19624] gi|332039408|gb|EGI75820.1| flagellar M-ring protein FliF [Hylemonella gracilis ATCC 19624] Length = 570 Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 111/454 (24%), Positives = 197/454 (43%), Gaps = 52/454 (11%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110 L+ L D I L++ + ++ ++ G +I VP+ V R+ LA+QGLP S +G Sbjct: 50 LFSGLSDKDGGAIIAQLTQMQVPYQYTEGGGAILVPADKVHDTRLRLASQGLPKGSV-TG 108 Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170 +EL + + FG T F + + R LEGE+ R+IQ++S + +ARVH+ +P F + + Sbjct: 109 FELMEN-SRFGATQFQERVNFQRGLEGELTRSIQALSSVQSARVHLALPQQNGFFREQQK 167 Query: 171 PTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE----MER 224 P+ASV++ + A+ I HLV+++VP + V+++D TGKLL+ + + Sbjct: 168 PSASVLLTLYPGRILDRAQIAGIVHLVSSSVPEMKPEAVSIVDDTGKLLSQSPDGAAGQD 227 Query: 225 NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV 284 + + L VQ I+ + I L +G N ++ V A+++ + + P+ Sbjct: 228 GVDTQQLKYVQQIEAQYRQRILDILEPVVGKGNVQAQVTADVDFSQSEQTSETHTPNQAP 287 Query: 285 ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRS------------------- 325 + S+ Q E++ P A +P + P P S Sbjct: 288 DTGAVRSQ--QTLESTNPGPAGP--SGIPGAVSNQPPGPNSAPINAAAQALAPGVPQAQA 343 Query: 326 -------------LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372 + +KE NYE++ ++RLS AVVVN+ + Sbjct: 344 QAQGRAGQTAQAAAPVSTRKESVINYEVDKTVRVVRAARGAIKRLSAAVVVNQRTQADAR 403 Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN-------QLFNSGTVQ 425 G A + ++ +V + G N RGD++ + + F+ + + VQ Sbjct: 404 GNVAPVPLTQQQVDQMTALVRESIGFNGDRGDSVNLMNAPFVVDAKADESLAFWQQPAVQ 463 Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHA 459 D L+ V+ ALV L G + + A Sbjct: 464 ELARD-LAWPVGAVLLALVVLFGVVRPVLKAMQA 496 >gi|87119487|ref|ZP_01075384.1| flagellar M-ring protein [Marinomonas sp. MED121] gi|86164963|gb|EAQ66231.1| flagellar M-ring protein [Marinomonas sp. MED121] Length = 551 Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 105/412 (25%), Positives = 200/412 (48%), Gaps = 30/412 (7%) Query: 21 RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80 R L L + I + +AA + + P Y + + + ++I LS NI F++ +N Sbjct: 28 RQLALMVGLAASIAIGLAAILWTDGPEYKPVLSSITDYNADQIVEVLSINNIPFKLDENT 87 Query: 81 SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140 ++ V + +AR+ LA G+ + + G E+ D+ G + F++ R LEGE++ Sbjct: 88 GALLVEADQYHQARLKLAGSGI-VNDTIVGMEIMDQEQGLGTSQFVEGTRYRRGLEGELS 146 Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLV 195 RTI S+ I +ARVH+ +P F + +P+ASV + R ++ S +AI +LV Sbjct: 147 RTISSLQSIKSARVHLAIPKESVFVRDTRKPSASVFLEMYPGRRLDRS---QVDAIVNLV 203 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSLSIVQAIQHEIEMNINKALAAFL 253 ++++ L VTV+D G LL+ E E ++ GK + ++ + +N L + Sbjct: 204 SSSISQLSAKSVTVVDQRGTLLSEKETSSELSVAGKQFDYTRKVEDVLLSRVNSILGPVV 263 Query: 254 GVDNFRSAVVAELNMDTQQIREIVYDPD---SKVERSIRLSKDAQR------SETSQPES 304 G D F++ V +++ + + + Y+PD + E+++ S++ S T+QP Sbjct: 264 GADRFKAEVSTDVDFTSVEQTDEQYNPDLLALRSEQTLNESRNGTTNSGIPGSLTNQPPG 323 Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 A+T P V++ ++E N+E++ T + RLS+AVVV+ Sbjct: 324 AITA----PEVAN-SAGAASGTNGESRQETTRNFELDRSISYTRRQQGTIRRLSVAVVVD 378 Query: 365 KGRLTEVLGRSADQGKI---DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 L + +++ + D L+ + +V A G +S RGD++++ + F Sbjct: 379 D--LVSIDPETSELVRTPWSDDELSRLTLLVRDAVGYDSARGDSVSVINSPF 428 >gi|325288778|ref|YP_004264959.1| flagellar M-ring protein FliF [Syntrophobotulus glycolicus DSM 8271] gi|324964179|gb|ADY54958.1| flagellar M-ring protein FliF [Syntrophobotulus glycolicus DSM 8271] Length = 534 Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 108/408 (26%), Positives = 202/408 (49%), Gaps = 45/408 (11%) Query: 21 RILILAS--VILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 R++++A+ V+L + + + + ++P Y L+ KL ++ I+ L + N +++ + Sbjct: 24 RVILIAAPLVVLTALTILI---VWASTPSYAVLFSKLSSTEAGAITTKLKDLNYSYKLEE 80 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 +G++I VP S + + R+ LA GLP S+ S +E ++V+ G T +++ V L+ E Sbjct: 81 SGATIQVPESQLAQIRLDLANAGLPQKSTFS-FENLNEVH-LGETDKDRQLRYVLGLQNE 138 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIR---HLV 195 + TIQ++ GI ARVHIV+P+ F + TA+V ++ NP SA+ +R +L+ Sbjct: 139 LETTIQTMDGIEYARVHIVIPEQSLFTEKQTESTAAVTVKK-NPGTELSADQVRAIANLL 197 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK----SLSIVQAIQHEIEMNINKALAA 251 +V L + VT++D+ G +L ++E+ ++ + L + Q++++ I+ ++ L Sbjct: 198 VYSVEGLQIEKVTIVDTNGNVL-SDELGKDKTNRMSVTDLQLQQSVENNIQKSVQTMLDK 256 Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311 G A LN D Q+I + D +E R ETS+ S Sbjct: 257 AFGAGKTIVRTNAALNFDQQKITSQTH-TDGAIES---------RQETSERVSDGQTTGG 306 Query: 312 MPHVSDRKVPLPRSLENTD------KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365 +P ++ +P + E TD K NY+ N T +++RL+I+V+ + Sbjct: 307 VPG-TETNIPTYPADEQTDQGTISEKYTSTENYQPNVVQEETVVSPGQIKRLTISVMADT 365 Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 +T A Q L+ I IV++A G++ RGD I + + F Sbjct: 366 DSIT------AQQ------LSNIEAIVASAAGVDQNRGDVIQVAGLPF 401 >gi|264676594|ref|YP_003276500.1| flagellar M-ring protein FliF [Comamonas testosteroni CNB-2] gi|299531261|ref|ZP_07044671.1| flagellar M-ring protein FliF [Comamonas testosteroni S44] gi|262207106|gb|ACY31204.1| flagellar M-ring protein FliF [Comamonas testosteroni CNB-2] gi|298720668|gb|EFI61615.1| flagellar M-ring protein FliF [Comamonas testosteroni S44] Length = 568 Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 94/343 (27%), Positives = 167/343 (48%), Gaps = 23/343 (6%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 F P Y L+ + D I L++ N+ ++ S+ G +I +P+ V R+ LA QG Sbjct: 56 FYRQPDYKLLFSNVSDKDGGAIVAQLTQMNVPYKYSEGGGAILIPADRVHDVRLKLATQG 115 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S +G+EL + + FG+T F + + R LEGE+ R+I +++ + +ARVH+ +P+ Sbjct: 116 LPKGSV-TGFELMEN-SKFGITQFQERLNFQRGLEGELTRSILALNAVQSARVHLALPNQ 173 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + +P+ASV++ + A+ I HLVA++VP ++ V+V+D TGKLL+ Sbjct: 174 NGFFREQQKPSASVLLSLHPGRMLDRAQIAGIVHLVASSVPEMEPAAVSVVDDTGKLLSQ 233 Query: 220 NEMERNILG---KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 + + N G + Q ++ + I L +G +N ++ V AEL+ + Sbjct: 234 SP-DGNAGGVDMQQFLYTQQVEQQYVRRILDILEPVVGKNNVKAQVSAELDFSQTESTSE 292 Query: 277 VYDPDSKVERSIRLSKDAQRS---ETSQPESAV--TVEQNMPHVSDRKV----PLP---- 323 + P+ + S+ + +T+ P + V P S + P P Sbjct: 293 QHRPNQSADGGAVRSQQVMETNGEKTATPPTGVPGATSNQPPQNSTAPINGANPAPQAAG 352 Query: 324 --RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 + +K+E +NYE++ T ++RL+ AVVVN Sbjct: 353 AGQGNGQGNKRESITNYEVDKTVRVTRGSTGTVKRLTAAVVVN 395 >gi|256020214|ref|ZP_05434079.1| flagellar MS-ring protein [Shigella sp. D9] gi|332281376|ref|ZP_08393789.1| lateral flagellar M-ring protein [Shigella sp. D9] gi|332103728|gb|EGJ07074.1| lateral flagellar M-ring protein [Shigella sp. D9] Length = 548 Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 113/415 (27%), Positives = 199/415 (47%), Gaps = 51/415 (12%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 L +A+ ++ +L+ R +V+ LY + E V++I L + +RI Sbjct: 33 LAVAATAIIVSVLWTGNRGYVS------LYGRQENLPVSQIVTVLDGEKLTYRIDPQSGQ 86 Query: 83 ISVPSSMVGKARIHLAAQG----LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 I VP + K R+ LAA+G LPS GYEL DK G + F+Q + R+LEGE Sbjct: 87 ILVPEEALSKTRMTLAAKGVQAILPS-----GYELMDKDEVLGSSQFVQNVRYKRSLEGE 141 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARP--TASVMIR-----AINPSVYKSAEAI 191 +A++I S+ + +ARVH+ + + SF + P +ASV++R +N AI Sbjct: 142 LAQSIMSLDAVESARVHLALNEESSF-VVSDEPQNSASVVVRLHYGAKLN---MDQVNAI 197 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINK 247 HLV+ ++P L V+V+D G LLT A E K I++ IQ + ++ Sbjct: 198 VHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTHASVAN 257 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAV 306 L + +G N+R +V+ EL++ T + Y K+ R L D + P S Sbjct: 258 VLDSLVGSGNYRVSVMPELDLSTIDETQEHYGDAPKINREESVLDSDTNQVAMGVPGSL- 316 Query: 307 TVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 N P V+ ++ P +L + + +Y+ + + I H + ++RL++ Sbjct: 317 ---SNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHI--QHPGFAVKRLNV 371 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 AVV+N+ A + A++ +++ A GI+++RGD +T++ ++F+ Sbjct: 372 AVVLNQ-------NAPALKNWKPEQTAQLTALLNNAAGIDAQRGDNLTLSLLNFV 419 >gi|296274027|ref|YP_003656658.1| flagellar M-ring protein FliF [Arcobacter nitrofigilis DSM 7299] gi|296098201|gb|ADG94151.1| flagellar M-ring protein FliF [Arcobacter nitrofigilis DSM 7299] Length = 580 Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 99/365 (27%), Positives = 185/365 (50%), Gaps = 36/365 (9%) Query: 67 LSEANIDFRISDNGSSISVPSS--MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L + I F + +G+S+++ +S + A+I L ++S + G+E+F+K +S G T+ Sbjct: 66 LEASGILFSVVGSGNSLTLKTSKEFINIAKIKLVTSD-AATSKHVGWEIFEK-SSLGTTN 123 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 F ++ +RALEGE++R+++S+SGI+ A V + +P F + PTAS ++ + P V Sbjct: 124 FENKVKYLRALEGELSRSLESLSGILRASVKLAIPKETIFTERKTPPTASAVL-TLKPGV 182 Query: 185 Y---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQA----- 236 Y K + I++ +A+A+PNL ++ ++D G +L ++ E + L S+ Q Sbjct: 183 YLTQKQIDGIKNFIASAIPNLTTNNIKLIDQDGSILEQSKEEADNLS---SVTQNKYKKR 239 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 ++ + E I L F+G + V LN + +E +Y+P E +IR + + Sbjct: 240 LEKDFESKIVDLLEPFVGKGRVVARVSLSLNFSKKHTQEEIYEP----EGTIRSQQTTES 295 Query: 297 SETSQPESAVTVEQNMPHV-SDRKVPLPRSLENTDKKEEQS-----NYEINTKSIATTHD 350 TS + V +P V S+ + P P + T+ + ++ NYEI+ + I Sbjct: 296 --TSSSDGVVKDTAAVPGVQSNIQAPQPEGNKGTNSSKNETSKNIVNYEISKRVIDHEDK 353 Query: 351 NYK-LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 NY + +++ AV + LT V + D ++ I ++V G + +RGD IT+ Sbjct: 354 NYSTINKITAAVTFDSAALTNVQNK-------DEFINNIVEVVQDTIGYDEKRGDKITVK 406 Query: 410 SMDFL 414 F+ Sbjct: 407 DFKFV 411 >gi|331645402|ref|ZP_08346506.1| flagellar M-ring protein FliF [Escherichia coli M605] gi|331045564|gb|EGI17690.1| flagellar M-ring protein FliF [Escherichia coli M605] Length = 548 Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 109/414 (26%), Positives = 201/414 (48%), Gaps = 38/414 (9%) Query: 21 RILILASVIL-VPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN 79 R +++A V L V + + + + + Y +LY + E V++I L + +RI Sbjct: 24 RWVLMAGVGLAVAVTAIIVSVLWTGNRGYVSLYGRQENLPVSQIVTVLDGEKLTYRIDPQ 83 Query: 80 GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEI 139 I VP + K R+ LAA+G+ + SGYEL DK G + F+Q + R+LEGE+ Sbjct: 84 SGQILVPEDALSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSSQFVQNVRYKRSLEGEL 142 Query: 140 ARTIQSISGIVAARVHIVMPDMGSFRKIGARP--TASVMIR-----AINPSVYKSAEAIR 192 A++I S+ + +ARVH+ + + SF + P +ASV++R +N AI Sbjct: 143 AQSIMSLDAVESARVHLALNEESSF-VVSDEPQNSASVVVRLHYGAKLN---MDQVNAIV 198 Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINKA 248 HLV+ ++P L V+V+D G LLT A E K I++ IQ +I ++ Sbjct: 199 HLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKIRASVANV 258 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVT 307 L + +G N+R +V+ +L++ T + Y K+ R L D + P S Sbjct: 259 LDSLVGTGNYRVSVMPDLDLSTIDETQEHYGDAPKINREESVLDSDTNQVAMGVPGSL-- 316 Query: 308 VEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 N P ++ ++ P +L + + +Y+ + + I H + ++RL++A Sbjct: 317 --SNRPPIAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHI--QHPGFAVKRLNVA 372 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 VV+N+ A + ++ +++ A GI+++RGD ++++ ++F+ Sbjct: 373 VVLNQ-------NAPALKNWKPEQTTQLTALLNNAAGIDAQRGDNLSLSLLNFV 419 >gi|330502763|ref|YP_004379632.1| flagellar MS-ring protein [Pseudomonas mendocina NK-01] gi|328917049|gb|AEB57880.1| flagellar MS-ring protein [Pseudomonas mendocina NK-01] Length = 594 Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 147/604 (24%), Positives = 258/604 (42%), Gaps = 93/604 (15%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + R L L + + + A + P Y LY L D ++ L Sbjct: 25 LSFLENLAEMSVLRQLGLLVGLAASVAIGFAVVLWSQQPDYRPLYGSLNGMDATQVVETL 84 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + + ID+ I N ++ V + + +AR+ LAA G + ++ G+E+ D+ G + FM+ Sbjct: 85 TASGIDYTIEPNSGALLVKADDLARARMRLAAAGAAPTDTSVGFEILDREQGLGTSQFME 144 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINP 182 R LEGE+ART+ S++ + AARVH+ MP F + +P+ASV++ RA+ P Sbjct: 145 ATRYRRGLEGELARTVASLNNVKAARVHLAMPKASVFVRDERKPSASVLVELYPGRALEP 204 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHE 240 S AI +LVA +VP LD G VTV+D G LL+ + E + GK + ++ Sbjct: 205 S---QVMAIVNLVATSVPELDKGQVTVVDQKGNLLSDQQELSELTMAGKQFDYTRRMEGL 261 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 ++ L LG +++ V A+++ + + +++PD RS + + ++S S Sbjct: 262 FTQRVHNILQPVLGTGRYKAEVSADVDFSSVESTSEMFNPDQPALRSEQQVNEQRQS--S 319 Query: 301 QPESAVT---------------------------------VEQNMPHVSDRKVPLPRSLE 327 P V V+ N + D P Sbjct: 320 LPPQGVPGALSNQPPGPAAAPQQAAGAAAPAGPVAAGQPLVDANGQQIMDPATGQPMLAP 379 Query: 328 NTDKKEEQS--NYEINTKSIATTHDNYKLERLSIAVVVNK--------GRLTEVLGRSAD 377 K EQS N+E++ T +L RLS+AVVV+ G T V + D Sbjct: 380 YPADKREQSTRNFELDRSISYTRQQQGRLRRLSVAVVVDDQVRVDPATGETTRVPWTADD 439 Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF---LENQLFN-SGTVQVSFMDILS 433 LA ++V + G ++ RGD++++ + F L ++ + Q F DI+ Sbjct: 440 -------LARFTRLVQDSVGFDASRGDSVSVINTAFTASLGEEIPDIPFYTQPWFWDIV- 491 Query: 434 RHFATVINALVFLVGTL---LVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVT 490 + V+ LV + G L L G + L D + GE+ G Sbjct: 492 KQVLGVLFILVLVFGVLRPVLNNITGGGRGKDLAGSGDVELGEMAG-------------L 538 Query: 491 TGLMPNDNIALDSSNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549 G + +D ++L + S S +++N+ S ++ + R A+++++W Sbjct: 539 DGELSDDRVSLGGPQSIMLPSPSEGYDAQLNAIKS---------LVAEDPGRVAQVVKEW 589 Query: 550 ARSE 553 S+ Sbjct: 590 INSD 593 >gi|254519422|ref|ZP_05131478.1| flagellar MS-ring protein [Clostridium sp. 7_2_43FAA] gi|226913171|gb|EEH98372.1| flagellar MS-ring protein [Clostridium sp. 7_2_43FAA] Length = 523 Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 110/404 (27%), Positives = 196/404 (48%), Gaps = 38/404 (9%) Query: 21 RILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSDVNRISVALSEANIDFRISDN 79 RI I+A+ LV ++ + + FF NS + Y L+ L+ SD ++ L E +D +I Sbjct: 26 RIAIIAA--LVTFIIAIGSLFFYNSANKYKVLFSNLDASDAQLVTNKLKEKKVDMKIE-- 81 Query: 80 GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEI 139 G +I VP + V + R+ LA + S + GYEL D NSFG+T ++ ++R +GE+ Sbjct: 82 GETIMVPKASVDELRLELAPE---LSDGSKGYELMDTGNSFGMTDEEFKLKKLRMQQGEL 138 Query: 140 ARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI--NPSVYKSAEAIRHLVAA 197 +TI+S I RVHI F + A+V ++ + N + E+I LV+ Sbjct: 139 EKTIKSFPQIDTVRVHITPSKDSVFVEDKEPGKAAVYLKLLPGNKLGKEQVESIVALVSG 198 Query: 198 AVPNLDMGDVTVLDSTGKLLTAN-------EMERNILGKSLSIVQAIQHEIEMNINKALA 250 + N+ ++ V+D LLT + E+ + K ++ + + +I+ +I L Sbjct: 199 STENVPKENIEVIDDNMNLLTKDLNNSDGTEVSSETIEKQFNLEKKYEEDIQKSIIDLLE 258 Query: 251 AFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQ 310 +G + +S+V +L+ D++Q E + DP+ KV S + K+ T + S V+ Sbjct: 259 PVVGKNKVKSSVNVDLDFDSKQKTETIIDPN-KVIVSQQTIKEKNGINTGE-NSGGPVDN 316 Query: 311 NMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTE 370 NM + D + + ++E +NYE T +++RL+ +V ++ Sbjct: 317 NMGNTIDEGT----TGNGSSREEVNTNYESGKTETKTISAPGEVKRLTASVFID------ 366 Query: 371 VLGRSADQGKIDSYL-AEINKIVSAATGINSRRGDTITITSMDF 413 G ID + A I K V+ A G+N+ RGD++++ M F Sbjct: 367 --------GNIDGNVQAAIEKSVANAIGLNTERGDSVSVVGMTF 402 >gi|91795006|ref|YP_564657.1| flagellar MS-ring protein [Shewanella denitrificans OS217] gi|91717008|gb|ABE56934.1| flagellar M-ring protein FliF [Shewanella denitrificans OS217] Length = 565 Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 108/403 (26%), Positives = 195/403 (48%), Gaps = 41/403 (10%) Query: 24 ILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSI 83 ++ASVI+ IML+ A S Y LY E + +++ L I +RI + + Sbjct: 48 VVASVIV--IMLWTA------SQGYRPLYGSQENVETSQVIEVLEAEGIYYRIESHTGLV 99 Query: 84 SVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTI 143 V +GKAR+ LAA+G+ + SG + D +S G + FM++ LEGE+AR+I Sbjct: 100 LVADDQLGKARMLLAARGVKAKVP-SGMDELDS-SSLGTSQFMEQAKYRHGLEGELARSI 157 Query: 144 QSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINPSVYKS---AEAIRHLVAAAV 199 S+ + +ARVH+ +P F R+ PTASVM++ ++P S EA+ +LVA +V Sbjct: 158 MSLKNVRSARVHLAIPKRSLFIRQTPELPTASVMLQ-LSPGAELSQSQVEAVVNLVAGSV 216 Query: 200 PNLDMGDVTVLDSTGKLLTANEMERNILGKS----LSIVQAIQHEIEMNINKALAAFLGV 255 ++ V ++D G+ L+AN E + ++ ++ + ++ + N + L A LG Sbjct: 217 TGMETSGVKIVDQEGRFLSANINEDQDMTQARDRQITYTRELEQNLMHNASSMLEAILGP 276 Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV 315 +NF+ + A++N + + + DP S + + TS + + Q +P Sbjct: 277 NNFQVKIAAKVNFNQIEETKEALDPQSVL----------VQERTSSDDKNAALAQGIPGA 326 Query: 316 SDRKVPLPRSLENTD-----KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTE 370 + P + D ++E +++ + +LE +S++V+VN T Sbjct: 327 LSNQPPQAAEGDKKDNTRNLRQEANRQFDVGRSVRHIRYQQMQLENISVSVLVNN---TV 383 Query: 371 VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 G + D D+ L ++ +V A G +S RGD+ +I + F Sbjct: 384 ATGLTTD----DAELTKLGSMVKDAIGFSSERGDSFSINAFAF 422 >gi|190574239|ref|YP_001972084.1| flagellar MS-ring protein [Stenotrophomonas maltophilia K279a] gi|190012161|emb|CAQ45784.1| putative flagellar M-ring protein [Stenotrophomonas maltophilia K279a] Length = 548 Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 112/449 (24%), Positives = 201/449 (44%), Gaps = 12/449 (2%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 Q+F SL TR L L ++I V + ++ F+ P LY L+ + L Sbjct: 17 QWFDRLQSLQITRRLGLMAMIAVAVAAGLSVFFWSQKPGMVPLYTGLDQKATAEATDLLR 76 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 A I F + I+VP + AR+ LA GL + S G+EL ++ FG++ F++ Sbjct: 77 AAQIPFALDPATGGITVPEKNLHDARLKLAGSGL-TDSGKLGFELMERDPGFGVSQFVES 135 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYK 186 ALE E++RTI ++ + +RVH+ +P +F + +ASV +R Sbjct: 136 ARYQHALETELSRTINTLRPVRDSRVHLAIPKPSAFTRQRDVASASVTLELRGGQQLERS 195 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN-- 244 +AI H+VAA++P+L VTV+D +G++L+ + + Q + E N Sbjct: 196 QVDAIVHMVAASIPDLAPERVTVVDQSGRMLSITDPNSEAAVNAAQFEQVRRQETSFNQR 255 Query: 245 INKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 I + L G V +++ T++ RE+ Y+ + + RS ++S++ + T P+ Sbjct: 256 IRELLEPMTGPGRVNPEVSVDMDFSVTEEAREL-YNGEPQKLRSEQMSENT--TSTPGPQ 312 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 N P + P K NYE++ T +++R+S+AV+V Sbjct: 313 GVPGATSNSPP-GQQAAPATAQTPTESSKNATRNYELDRTLQHTRQPAGRIKRVSVAVLV 371 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 + G+ + Q + L + +V A G N+ RGDT+++ + F+ + G Sbjct: 372 DNVPRAGANGKMSPQPLSAAELTRVEALVKQAVGFNAERGDTVSVMNAPFVRDTTPVEGP 431 Query: 424 V--QVSFMDILSRHFATVINALVFLVGTL 450 ++ ++ R + L L G L Sbjct: 432 AWWELPWVHDAGRMLLGAVVVLALLFGVL 460 >gi|157147120|ref|YP_001454439.1| flagellar MS-ring protein [Citrobacter koseri ATCC BAA-895] gi|157084325|gb|ABV14003.1| hypothetical protein CKO_02897 [Citrobacter koseri ATCC BAA-895] Length = 540 Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 117/407 (28%), Positives = 194/407 (47%), Gaps = 68/407 (16%) Query: 48 YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 Y LY E V+++ L NI +RI+ + I V S + +AR+ LAA+G+ S+++ Sbjct: 24 YVALYGSQEHLPVSQVVDVLGAENIAYRINPDNGQILVSESKLPQARMALAAKGI-SAAT 82 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 GYEL DK G + F+Q + R+LEGE+A++I ++ + ARVH+ + + SF + Sbjct: 83 PDGYELMDKEEMLGSSQFIQNVRYKRSLEGELAKSIMALDPVENARVHLGLNESSSF-VL 141 Query: 168 GARPT--ASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-- 218 +PT ASVM+ R ++ + ++ LVA +VP + G V V+D +G LL+ Sbjct: 142 TNKPTSSASVMVQLHYGRKLD---EQQVASVIQLVAGSVPGMQPGAVRVVDQSGNLLSDG 198 Query: 219 ----ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 M +G ++Q I+ + NI L + +G NFR +V +++ Sbjct: 199 IEGPDGGMTSKRMGD--DVMQRIREDTTKNITSLLTSLVGPGNFRISVAPTVDL------ 250 Query: 275 EIVYDPDSKVERSI-RLSKDAQRSETSQPESAVTVEQ--NMP-HVSDRKV-PLPRSLEN- 328 S+VE + RL KD + S+ + T E +P +S+R V P P++ N Sbjct: 251 -------SRVEETQERLGKDPRVSDEQLSQENTTNEMAFGIPGSLSNRPVNPTPQTPANP 303 Query: 329 ----------------TDKK------EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 TD + +EQ Y + H YKLE+LS+AVV+N+ Sbjct: 304 AEGNPPAENAANAANNTDPRSLSSRSQEQRKYAFDRDIRHIRHPGYKLEKLSVAVVLNQA 363 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 L + + L + ++V +A GI RGD +T+ + F Sbjct: 364 --APALAKITPE-----QLTSMTRLVESAAGIEKARGDALTLDVLTF 403 >gi|256833241|ref|YP_003161968.1| flagellar M-ring protein FliF [Jonesia denitrificans DSM 20603] gi|256686772|gb|ACV09665.1| flagellar M-ring protein FliF [Jonesia denitrificans DSM 20603] Length = 534 Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 123/421 (29%), Positives = 201/421 (47%), Gaps = 43/421 (10%) Query: 3 ILDQLLQFFKSGTSLGRTRILI-LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + +L + T RT LI LA VI+ + L M + P LY L +D Sbjct: 8 VFTRLFSAIREFTVAQRTLALIGLAGVIVALVALAM----WATRPQMQPLYTDLAPADAA 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L+ + +++++ GS+I VPS V R+ +A+ G+ S S+ GY L D + G Sbjct: 64 AIVDQLAANGVQYQLTNGGSTILVPSGQVYDQRLKVASSGI-SPSAEGGYSLLD---NMG 119 Query: 122 LTS--FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 +TS F Q +T RALEGEIA+TI +++GI A V + MP+ F A PTASV ++ Sbjct: 120 MTSSDFQQNVTYKRALEGEIAKTITAMNGIEVASVQLAMPEDTVFVSQSADPTASVFVKP 179 Query: 180 INPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI 237 + AI V+AAV + + +V V+DS G++L+A G +L Q Sbjct: 180 KAGVTLADDQVAAITQFVSAAVEGMKVENVAVIDSDGQVLSAMG-GSGTHGTNLKETQQY 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPDSKVERSIRLSKDAQR 296 + I ++ L LG +V AEL+ D T+++ E YD + E ++ L++ Sbjct: 239 EQRIAASLQGMLDRILGNGMAVVSVTAELDFDATERVSE-SYDSN---EDALPLTERETT 294 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLEN---TDKKEEQSN-YEINTKSIATTHDNY 352 E + +A V + + +P + T+ E++N + T+ I T Sbjct: 295 EEYTGTGNAAGV------LGPDNIAVPEGQTDGNYTNTSSERNNAVDKTTERIVTAPGTV 348 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 + R S++V V++ Q + ++ +V+AA GI+ RGDT+T+T M Sbjct: 349 R--RQSVSVAVDQ------------QAAATININDLQAMVTAAAGIDEERGDTVTVTRMA 394 Query: 413 F 413 F Sbjct: 395 F 395 >gi|163789650|ref|ZP_02184088.1| flagellar M-ring protein fliF [Carnobacterium sp. AT7] gi|159875182|gb|EDP69248.1| flagellar M-ring protein fliF [Carnobacterium sp. AT7] Length = 524 Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 121/451 (26%), Positives = 220/451 (48%), Gaps = 48/451 (10%) Query: 15 TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF 74 T+LG+++ + L V+ I + A ++ Y L+ LE +D I + ID+ Sbjct: 16 TNLGKSKRIGLVMVLFFVISIVTAMTYYTQKVEYATLFSNLEEADAGTIVNDIKTKGIDY 75 Query: 75 RISDNGSSISVPSSMVGKARIHLAAQG-LPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 ++ DNG++I + + V RI LA LP S+ +G+E+FD+ S T ++I R Sbjct: 76 KLEDNGTTILIDQAQVDAYRIELAVNDLLPKST--TGFEIFDET-SMMATDEDRKIMYQR 132 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMIRAINPSVY--KSAE 189 A+ GE+ R+I ++ I A+V + +P+ F + ++ +ASV++ ++ S + + Sbjct: 133 AVTGELERSISALDSIEEAKVMLSLPEDSVFTSEENQSKASASVVLTPLSGSQIPANAVQ 192 Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERN-----ILGKSLSIVQAIQHEIEM 243 I L++ AV NL ++ ++D+ G LL+ A E E N ++ K +I + + ++E Sbjct: 193 GIASLISGAVDNLPKENIKIVDTAGNLLSVALEDEVNLNATDLVSKYQAITNSYEQQLEQ 252 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET-SQP 302 + + L G+D AV A++N D+ + EI+ DS V RSET S Sbjct: 253 KLLQTLGPIYGIDKLTVAVNADMNFDSSE-SEIINYGDSSV-----------RSETVSAG 300 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLE--NTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 + VE+ D + S E + +NYE+N+++ T ++ERLS + Sbjct: 301 GKTIGVEEGEGF--DNAINQVTSGEEGGNSTYDRTTNYELNSETTNTIKAPGEVERLSTS 358 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 V+ + G L+ AD+ +++ IV+A G + R D I+I +DF + Sbjct: 359 VIFD-GNLS-----PADKESLEA-------IVAATVGTVAEREDVISIQGIDFATSTEVV 405 Query: 421 SGT----VQVSFMDILSRHFATVINALVFLV 447 T ++ S D L R++ ++ LV L+ Sbjct: 406 EPTAPEQLKSSIRDTLLRYWPYLVGGLVLLI 436 >gi|294084401|ref|YP_003551159.1| flagellar M-ring protein FliF [Candidatus Puniceispirillum marinum IMCC1322] gi|292663974|gb|ADE39075.1| flagellar M-ring protein FliF [Candidatus Puniceispirillum marinum IMCC1322] Length = 572 Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 116/423 (27%), Positives = 200/423 (47%), Gaps = 49/423 (11%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 R + A++I LF+ F+ +P LY L S+ R+ AL + ++ + Sbjct: 39 RRALPTFAAIIFAVAGLFVF--VFMQAPQRTTLYASLPESEKARVVEALINSGVEVTLDP 96 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 + VP+S +A++ LAAQGLP+S + GY + G + ++ + ++ E E Sbjct: 97 TTGDVLVPTSDFHQAKMSLAAQGLPTSVPD-GYASVGDI-PMGSSRSVENVRLKQSQEIE 154 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEAIRHLVA 196 +AR+I I G+V+ARVH+ +P+ F + PTASV I+ N S EA+ HLV+ Sbjct: 155 LARSIGEIDGVVSARVHLAIPEKSVFARNATPPTASVFIQMNNGRTLGSQQVEAVVHLVS 214 Query: 197 AAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEM-NINK-----A 248 ++VP++ DVTV+D G LL+ N+M SL +QH I + NI + Sbjct: 215 SSVPSMAKTDVTVVDQFGALLSNPTNDM------ASLLSDSQLQHRIRLENIYRNRVISL 268 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308 ++ +G N S + +++ + E DPD RS + S D + + Sbjct: 269 VSPIVGAGNVTSQINIDIDYTRSETTEERVDPDGNALRSEQKSVDMKSDANA-------- 320 Query: 309 EQNMPHVSDRKVPLPRSLE-------------NTDKKEEQSNYEINTKSIATTHDNYKLE 355 + +P + + PL ++ +T E NYE++ T + ++ Sbjct: 321 -RGIPGATANRPPLQSEIDSVQADDAGAKGSVSTQSSNEVRNYEVSRTVSTTQSPSTRIV 379 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSY----LAEINKIVSAATGINSRRGDTITITSM 411 + AV+V R EV+ ++ + LAEI K+V+ A GI++ RGD +T++S Sbjct: 380 GIQAAVLV---RDKEVVNPETGLMEVVPFTPEKLAEIEKLVANAIGIDAERGDKLTVSSS 436 Query: 412 DFL 414 F+ Sbjct: 437 AFV 439 >gi|157738171|ref|YP_001490855.1| flagellar M-ring protein FliF [Arcobacter butzleri RM4018] gi|157700025|gb|ABV68185.1| flagellar M-ring protein FliF [Arcobacter butzleri RM4018] Length = 574 Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 117/470 (24%), Positives = 233/470 (49%), Gaps = 51/470 (10%) Query: 4 LDQLLQFFKSGTSLGRTRILILAS------VILVPIMLFMAARFFVNSPHYDNLYVKLEV 57 +DQLL+F +L +++ +IL S +I+V +++ + + +Y + L Sbjct: 1 MDQLLKFI---NNLNKSQRIILVSGFALLFIIVVGFLIYSSIKAEDKKLNY-TIASNLTQ 56 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSS--MVGKARIHLAAQGLPSSSSNSGYELFD 115 +DV R S L + I F +S +G+++++ +S + A+I L +++ + G+E+F+ Sbjct: 57 ADVMRASEELEASGIQFVVSGSGNNLTLKTSQEFINIAKIKLVTSE-AATNKHVGWEIFE 115 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 K +S G T+F ++ +RALEGE++R+++S+SG++ A V I +P F + A TAS Sbjct: 116 K-SSLGTTNFENKVKYLRALEGELSRSLESLSGVLKANVKIAIPKETIFTEKRADTTASA 174 Query: 176 MIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL- 231 +I ++ ++ K + I++ +A+AVP+L ++ ++D G LL N E N + + Sbjct: 175 VI-SLKQGIHLTKKQIDGIKNFIASAVPDLKQENIQLIDQDGNLLEQNIDEENTIKSAAQ 233 Query: 232 -SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290 I+ + E I L +G + V L+ + + E +Y P+ + RS ++ Sbjct: 234 NKYKDKIEKDYEAKIISLLEPVVGTGRVVAKVNVALDFVKKDVEEEIYSPEGSI-RSQQV 292 Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSL-------ENTDKKEEQSNYEINTK 343 ++ ++ P + + V D + +P ++ N++ +NYEI+ K Sbjct: 293 IENTNNTQGMLPNNG-----GVAGV-DNNIQVPTTVGDGSKISSNSEGSNTVTNYEISRK 346 Query: 344 SIATTHDNY-KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402 I+ NY ++R++ +V + + +L D+G+ ++A + + A G + R Sbjct: 347 VISQKDGNYTNIKRITASVTFD----SAILKDHPDKGE---FIASLESLSGDAIGYDRGR 399 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINA--LVFLVGTL 450 GDTIT+ F+ + N V F VIN+ + +VGT+ Sbjct: 400 GDTITVKDFKFVGAKALNENGQLVD-------EFGNVINSGDGISVVGTM 442 >gi|330946121|gb|EGH47363.1| flagellar MS-ring protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 236 Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 77/235 (32%), Positives = 120/235 (51%), Gaps = 10/235 (4%) Query: 37 MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIH 96 A + P Y LY L D +I L+ ANI++ + N ++ V S V +ARI Sbjct: 5 FAVVLWSQQPDYRPLYGSLAGMDSKQIMDTLTAANINYTVEPNSGALLVKSDDVQRARIQ 64 Query: 97 LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHI 156 LA G+ S +N G+E+ DK G + FM+ R LEGE+ARTI +++ + ARVH+ Sbjct: 65 LAQAGVVQSDANIGFEILDKDQGLGTSQFMEATRYRRGLEGELARTISALNNVKGARVHL 124 Query: 157 VMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLD 211 +P F + +P+ASV++ R++ PS AI +LVA +VP L +TV+D Sbjct: 125 AIPKSSVFVRDDRKPSASVLVELYAGRSLEPS---QVLAIINLVATSVPELSKSQITVVD 181 Query: 212 STGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVA 264 G LL+ A E + GK + ++ + + L LG D +++ V A Sbjct: 182 QKGTLLSDQAENSELTMAGKQFDYSRRMEGMLTQRVQNILQPILGNDRYKAEVSA 236 >gi|218703511|ref|YP_002411030.1| flagellar MS-ring protein [Escherichia coli UMN026] gi|293403341|ref|ZP_06647432.1| predicted protein [Escherichia coli FVEC1412] gi|298378953|ref|ZP_06988834.1| flagellar M-ring protein FliF [Escherichia coli FVEC1302] gi|300898054|ref|ZP_07116423.1| flagellar M-ring protein FliF [Escherichia coli MS 198-1] gi|218430608|emb|CAR11474.1| Lateral flagellar M-ring protein (FliF-like) [Escherichia coli UMN026] gi|291429194|gb|EFF02214.1| predicted protein [Escherichia coli FVEC1412] gi|298280066|gb|EFI21570.1| flagellar M-ring protein FliF [Escherichia coli FVEC1302] gi|300358232|gb|EFJ74102.1| flagellar M-ring protein FliF [Escherichia coli MS 198-1] Length = 548 Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 112/415 (26%), Positives = 198/415 (47%), Gaps = 51/415 (12%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 L +A+ ++ +L+ R +V+ LY + E V++I L + +RI Sbjct: 33 LAVAATAIIVSVLWTGNRGYVS------LYGRQENLPVSQIVTVLDGEKLSYRIDPQSGQ 86 Query: 83 ISVPSSMVGKARIHLAAQG----LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 I VP + K R+ LAA+G LPS GYEL DK G + F+Q + R+LEGE Sbjct: 87 ILVPEDALSKTRMTLAAKGVQAILPS-----GYELMDKDEVLGSSQFVQNVRYKRSLEGE 141 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARP--TASVMIR-----AINPSVYKSAEAI 191 +A++I S+ + +ARVH+ + + SF + P +ASV++R +N AI Sbjct: 142 LAQSIMSLDAVESARVHLALNEESSF-VVSDEPQNSASVVVRLHYGAKLN---MDQVNAI 197 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINK 247 HLV+ ++P L V+V+D G LLT A E K I++ IQ + ++ Sbjct: 198 MHLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRASVAN 257 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAV 306 L + +G N+R +V+ +L++ T + Y K+ R L D + P S Sbjct: 258 VLDSLVGTGNYRVSVMPDLDLSTIDETQEHYGDAPKINREESVLDSDTNQVAMGVPGSL- 316 Query: 307 TVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 N P V+ ++ P +L + + +Y+ + + I H + ++RL++ Sbjct: 317 ---SNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHI--QHPGFAVKRLNV 371 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 AVV+N+ A + A++ +++ A GI+ +RGD +T++ ++F+ Sbjct: 372 AVVLNQ-------NAPALKNWKPEQTAQLTALLNNAAGIDVQRGDNLTLSLLNFV 419 >gi|332756092|gb|EGJ86445.1| flagellar M-ring protein domain protein [Shigella flexneri 4343-70] gi|333003272|gb|EGK22818.1| flagellar M-ring protein domain protein [Shigella flexneri K-218] Length = 261 Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 75/231 (32%), Positives = 122/231 (52%), Gaps = 5/231 (2%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92 + + +A + +P Y L+ L D I L++ NI +R S+ +I VP+ V + Sbjct: 33 VAVMVALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGAIEVPADKVHE 92 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RTI++I + A Sbjct: 93 LRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRTIETIGPVKGA 150 Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVL 210 RVH+ MP F + P+ASV + + + AI HLV++AV L G+VT++ Sbjct: 151 RVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAGLPPGNVTLV 210 Query: 211 DSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRS 260 D G LLT +N R++ L ++ I+ I L+ +G N + Sbjct: 211 DQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQQRIEAILSPIVGNGNIHA 261 >gi|256376473|ref|YP_003100133.1| flagellar M-ring protein FliF [Actinosynnema mirum DSM 43827] gi|255920776|gb|ACU36287.1| flagellar M-ring protein FliF [Actinosynnema mirum DSM 43827] Length = 559 Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 102/420 (24%), Positives = 201/420 (47%), Gaps = 32/420 (7%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 +L FK+ T+ + L+ + +L + + + P Y LY L D + I Sbjct: 13 VLSGFKAFTA---GQKLVAGATVLAVVGAIAFYFLWASKPTYAPLYTSLASKDASAIVDQ 69 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L+ A + + ++D G +I VP V R+ ++A LPS S ++GY L D+ + FM Sbjct: 70 LTAAGVTYELTDGGQTIMVPQDQVYPMRLKMSAANLPSQS-DTGYALLDQ-QGVTTSEFM 127 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-RAINPSVY 185 Q++ RA+EGE+ TI++I G+ +A VH+ +P F ++PTA+V++ S+ Sbjct: 128 QQVGYQRAMEGELGSTIKAIDGVTSASVHLAIPQKDVFSDSDSKPTAAVLVGTGAGKSLS 187 Query: 186 KS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAIQHEI 241 ++ + I HLV+++V + VTV + GK+L+ A+ + G +A + + Sbjct: 188 QAQVQTITHLVSSSVEGMSADGVTVAGTDGKVLSTGGADGASASANGDRDDQTKAFEQRL 247 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD------PDSKVERSIRLSKDAQ 295 ++ + L+ +G D+ V A+L+ D + + Y P S+ + + D Sbjct: 248 STSLQQMLSQVVGQDHAVVQVTADLDYDQTETKSQTYTSGDGTAPLSESSTTESYTGDGG 307 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY--K 353 ++ + N + ++++ N +N S+ T + K Sbjct: 308 QNAAGGVLGSTNGTLNGLEGNTTNGTGGSGNGTYNQEKSTRNNAVN--SVIETRQSAPGK 365 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 + +L +AV++++ ++A G +D +AE+ +I S+A +++ RGDT+ ++SM F Sbjct: 366 VRKLGVAVLLDQ--------KTA--GAVD--MAEVERIASSAVALDTARGDTLAVSSMPF 413 >gi|34558286|ref|NP_908101.1| flagellar MS-ring protein [Wolinella succinogenes DSM 1740] gi|34484005|emb|CAE11001.1| FLAGELLAR BASAL-BODY M-RING PROTEIN FLIF [Wolinella succinogenes] Length = 577 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 114/414 (27%), Positives = 205/414 (49%), Gaps = 45/414 (10%) Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L ++ I +++ + ++I +P V + RI LA+ G+P SS G+E+FDK FG T F Sbjct: 72 LEQSKIPYKLPKD-NTILIPEEKVYEERIKLASSGIPKSS-KVGFEIFDK-QEFGATDFD 128 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-----AIN 181 Q++ VRA EGE++RTI+S++ I A VHI +P F PTASV++R A+ Sbjct: 129 QKVKFVRATEGELSRTIESLTPIEKASVHIAIPKDSVFVSKETPPTASVVLRLRPNMALT 188 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLSIVQAIQ 238 P+ I++LVAAA+ L+ +V +++ G+ L + + + + Q + Sbjct: 189 PA---QVLGIKNLVAAAITRLEPENVRIVNENGEPLGEGDELTTSKEMAAVQMRYKQNFE 245 Query: 239 HEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 +E I LA + G D + V AE + +Q + ++DP++ V L ++ Sbjct: 246 RSVEEKIVNILAPIIGGADRVVAKVTAEFDFSQKQSTQELFDPNNVVRSEQTLE---EKR 302 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD------KKEEQSNYEINTKSIATTHDN 351 E +P+ V + ++ P+ + L++ D K + +N+EI +K++++ Sbjct: 303 EGFKPKEIGGVPGAVSNIG----PV-QGLDSQDVRDKYEKSQTTTNFEI-SKTVSSIKGE 356 Query: 352 Y-KLERLSIAVVVNKGRLTEVLGRSADQGK--------IDSYLAEINKIVSAATGINSRR 402 + ++RLS AVVV+ T V +QG D + +IN +V A G + R Sbjct: 357 FATIKRLSAAVVVDGKYKTSV----NEQGNEVLEYIPLSDEEMEKINGLVRQAMGFSGTR 412 Query: 403 GDTITITSMDF-LENQLFNSGTVQVSFMDILSRHFATVINALVF-LVGTLLVTF 454 GD T+++ +F ++ + T F+ L + + L + +VG +L F Sbjct: 413 GDEATVSNFEFDAKSAGYAPKTPVERFVQGLEKFMGPFMPMLKYVIVGLILFVF 466 >gi|313683040|ref|YP_004060778.1| flagellar m-ring protein flif [Sulfuricurvum kujiense DSM 16994] gi|313155900|gb|ADR34578.1| flagellar M-ring protein FliF [Sulfuricurvum kujiense DSM 16994] Length = 572 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 112/384 (29%), Positives = 200/384 (52%), Gaps = 30/384 (7%) Query: 48 YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 Y L+ +L D +++ L + I +RI + I VP +V K RI +A+ G+P Sbjct: 54 YQVLFEQLSGEDASKVIEQLEKDKIPYRIPRE-NVIEVPKEVVYKERIAIASLGIPKEG- 111 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 + G+ELFDK FG T+F QE+ RALEGE+AR+I S+S + + V + +P F + Sbjct: 112 HVGFELFDK-QEFGATNFDQEVKFRRALEGELARSIDSLSPVEKSSVSLALPKETLFVEE 170 Query: 168 GARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM 222 P+ASVM+ R + P K I+ LVAAAVP L +V ++++ G+ L N+ Sbjct: 171 AVPPSASVMVQLYPDRKLTP---KQIRGIKKLVAAAVPKLTPENVALINAEGETLGDND- 226 Query: 223 ERNILGKSLSIVQ----AIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIV 277 + + +G+ SI Q + + E I LA F+ G D + V E + Q Sbjct: 227 DASAMGELSSIQQQYKTKEEKKQEEKIINVLAPFIGGKDRVVAKVTIEYDFSEQSSTSEK 286 Query: 278 YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSN 337 +DP++ V RS + S+ ++ E + P+ V + ++ + E +K +N Sbjct: 287 FDPENVV-RSEQSSE--EKREGAAPQQVGGVPGAVSNIGPVEGLAGGGGEKFEKTTGTTN 343 Query: 338 YEINTKSIATTHDNY-KLERLSIAVVVNKGRL---TEVLGRSADQGKI----DSYLAEIN 389 YE+ +K+++TT + +++R++ AVVV+ G+ + G+ D+ + ++ + I+ Sbjct: 344 YEV-SKTVSTTKMEFARIKRMTAAVVVD-GKYEPKKDASGQPTDEIEYIALDETQIQAID 401 Query: 390 KIVSAATGINSRRGDTITITSMDF 413 +V + G + +RGD +T+ + +F Sbjct: 402 ALVKQSIGADEQRGDQVTVRNFEF 425 >gi|260853453|ref|YP_003227344.1| putative lateral flagellar basal-body M-ring and collar protein [Escherichia coli O26:H11 str. 11368] gi|257752102|dbj|BAI23604.1| predicted lateral flagellar basal-body M-ring and collar protein [Escherichia coli O26:H11 str. 11368] gi|323158008|gb|EFZ44109.1| flagellar M-ring protein FliF [Escherichia coli EPECa14] Length = 548 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 112/415 (26%), Positives = 199/415 (47%), Gaps = 51/415 (12%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 L +A+ ++ +L+ R +V+ LY + E V++I L + +RI Sbjct: 33 LAVAATAIIVSVLWTGNRGYVS------LYGRQENLPVSQIVTVLDGEKLTYRIDPQSGQ 86 Query: 83 ISVPSSMVGKARIHLAAQG----LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 I VP + K R+ LAA+G LPS GYEL DK G + F+Q + R+LEGE Sbjct: 87 ILVPEEALSKTRMTLAAKGVQAILPS-----GYELMDKDEVLGSSQFVQNVRYKRSLEGE 141 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARP--TASVMIR-----AINPSVYKSAEAI 191 +A++I S+ + +ARVH+ + + SF + P +ASV++R +N AI Sbjct: 142 LAQSIMSLDAVESARVHLALNEESSF-VVSDEPQNSASVVVRLHYGAKLN---MDQVNAI 197 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINK 247 HLV+ ++P L V+V+D G LLT A E K I++ IQ + ++ Sbjct: 198 VHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTHASVAN 257 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAV 306 L + +G N+R +V+ +L++ T + Y K+ R L D + P S Sbjct: 258 VLDSLVGSGNYRVSVMPDLDLSTIDETQEHYGDAPKINREESVLDSDTNQVAMGVPGSL- 316 Query: 307 TVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 N P V+ ++ P +L + + +Y+ + + I H + ++RL++ Sbjct: 317 ---SNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHI--QHPGFAVKRLNV 371 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 AVV+N+ A + A++ +++ A GI+++RGD +T++ ++F+ Sbjct: 372 AVVLNQ-------NAPALKNWKPEQTAQLTALLNNAAGIDAQRGDNLTLSLLNFV 419 >gi|307315211|ref|ZP_07594790.1| flagellar M-ring protein FliF [Escherichia coli W] gi|331666532|ref|ZP_08367406.1| flagellar M-ring protein FliF [Escherichia coli TA271] gi|306905392|gb|EFN35929.1| flagellar M-ring protein FliF [Escherichia coli W] gi|315059474|gb|ADT73801.1| Lateral flagellar M-ring protein [Escherichia coli W] gi|323181532|gb|EFZ66952.1| flagellar M-ring protein FliF [Escherichia coli 1357] gi|323379968|gb|ADX52236.1| flagellar M-ring protein FliF [Escherichia coli KO11] gi|331065756|gb|EGI37640.1| flagellar M-ring protein FliF [Escherichia coli TA271] Length = 548 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 112/415 (26%), Positives = 199/415 (47%), Gaps = 51/415 (12%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 L +A+ ++ +L+ R +V+ LY + E V++I L + +RI Sbjct: 33 LAVAATAIIVSVLWTGNRGYVS------LYGRQENLPVSQIVTVLDGEKLTYRIDPQSGQ 86 Query: 83 ISVPSSMVGKARIHLAAQG----LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 I VP + K R+ LAA+G LPS GYEL DK G + F+Q + R+LEGE Sbjct: 87 ILVPEEALSKTRMTLAAKGVQAILPS-----GYELMDKDEVLGSSQFVQNVRYKRSLEGE 141 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARP--TASVMIR-----AINPSVYKSAEAI 191 +A++I S+ + +ARVH+ + + SF + P +ASV++R +N AI Sbjct: 142 LAQSIMSLDAVESARVHLALNEESSF-VVSDEPQNSASVVVRLHYGAKLN---MDQVNAI 197 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINK 247 HLV+ ++P L V+V+D G LLT A E K I++ IQ + ++ Sbjct: 198 VHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTHASVAN 257 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAV 306 L + +G N+R +V+ +L++ T + Y K+ R L D + P S Sbjct: 258 VLDSLVGSGNYRVSVMPDLDLSTIDETQEHYGDAPKINREESVLDSDTNQVAMGVPGSL- 316 Query: 307 TVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 N P V+ ++ P +L + + +Y+ + + I H + ++RL++ Sbjct: 317 ---SNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHI--QHPGFAVKRLNV 371 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 AVV+N+ A + A++ +++ A GI+++RGD +T++ ++F+ Sbjct: 372 AVVLNQ-------NAPALKNWKPEQTAQLTALLNNAAGIDAQRGDNLTLSLLNFV 419 >gi|333003033|gb|EGK22587.1| flagellar M-ring protein domain protein [Shigella flexneri VA-6] Length = 261 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/231 (32%), Positives = 122/231 (52%), Gaps = 5/231 (2%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92 + + +A + +P Y L+ L D I L++ NI +R S+ +I VP+ V + Sbjct: 33 VAVMVALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGAIEVPADKVHE 92 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RTI++I + A Sbjct: 93 LRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRTIETIGPVKGA 150 Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVL 210 RVH+ MP F + P+ASV + + + AI HLV++AV L G+VT++ Sbjct: 151 RVHLAMPKPSLFVREQKSPSASVTVNLLPSRALDEGQISAIVHLVSSAVAGLPPGNVTLV 210 Query: 211 DSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRS 260 D G LLT +N R++ L ++ I+ I L+ +G N + Sbjct: 211 DQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIHA 261 >gi|170021374|ref|YP_001726328.1| flagellar MS-ring protein [Escherichia coli ATCC 8739] gi|169756302|gb|ACA79001.1| flagellar M-ring protein FliF [Escherichia coli ATCC 8739] Length = 548 Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 112/414 (27%), Positives = 197/414 (47%), Gaps = 51/414 (12%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 L +A+ ++ +L+ R +V+ LY + E V++I L + +RI Sbjct: 33 LAVAATAIIVSVLWTGNRGYVS------LYGRQENLPVSQIVTVLDGEKLSYRIDPQSGQ 86 Query: 83 ISVPSSMVGKARIHLAAQG----LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 I VP + K R+ LAA+G LPS GYEL DK G + FMQ + R+LEGE Sbjct: 87 ILVPEDELSKTRMTLAAKGVQAILPS-----GYELMDKDEVLGSSQFMQNVRYKRSLEGE 141 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARP--TASVMIR-----AINPSVYKSAEAI 191 +A++I S+ + +ARVH+ + + SF + P +ASV++R +N AI Sbjct: 142 LAQSIMSLDAVESARVHLALNEESSF-VVSDEPQNSASVVVRLHYGAKLN---MDQVNAI 197 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINK 247 HLV+ ++P L V+V+D G LLT A E K I++ IQ + ++ Sbjct: 198 VHLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRASVAN 257 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAV 306 L + +G N+R +V+ +L++ T + Y K+ R L D + P S Sbjct: 258 VLDSLVGSRNYRVSVMPDLDLSTIDETQEHYGDAPKINREESVLDSDTNQVAMGVPGSL- 316 Query: 307 TVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 N P V+ ++ P +L + + +Y+ + + I H + ++RL++ Sbjct: 317 ---SNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHI--QHPGFAVKRLNV 371 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVV+N+ A + ++ +++ A GI+++RGD +T++ ++F Sbjct: 372 AVVLNQ-------NAPALKNWKPEQTTQLTALLNNAAGIDAQRGDNLTLSLLNF 418 >gi|118444659|ref|YP_877975.1| flagellar MS-ring protein [Clostridium novyi NT] gi|118135115|gb|ABK62159.1| flagellar M-ring protein FliF [Clostridium novyi NT] Length = 523 Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 120/425 (28%), Positives = 207/425 (48%), Gaps = 47/425 (11%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 L+ FK S G+ + V ++ ++++ F+N+ Y LY ++ +D + Sbjct: 11 LIDKFKE-LSKGKKIAFSILGVGIISGLIYLIV--FLNTTKYAVLYKDMDPNDAQTVMTK 67 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L+E +++++ + SSI VP V + R+ LA Q +S + GYE+ + +SFG+T Sbjct: 68 LNEKKVEYKVEN--SSIKVPEEKVSELRLELAPQ---LTSGSKGYEILENADSFGMTDKE 122 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 +E+ ALEGE+A+ I+S+ + A+V +VMP G+F K ASV I N Sbjct: 123 RELNYKIALEGELAKNIKSLPEVKDAKVLLVMPQEGNFFKQAENAQASVRIE-FNEGKSI 181 Query: 187 SAEAIR---HLVAAAVPNLDMGDVT---VLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240 S E I+ LV +V NL +V VL+ K LT +++ GK L+ V Q++ Sbjct: 182 SKEQIKAIVSLVTGSVKNLKKENVKIIGVLNGKTKDLT-DDLFSEEDGKDLTSVTDKQNK 240 Query: 241 IEMNINKA--------LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292 + N+ K L G + ++AV +L+ D + V+DP++ V RS + K Sbjct: 241 YKKNLEKEYVKKIMNILTPKYG-EGVKAAVNVDLDFDASEKTSTVWDPNNVV-RSEEIEK 298 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQS--NYEINTKSIATTHD 350 D ++S+ + SA V+ NM + + + N+ E++ NYE+ T Sbjct: 299 DTEKSKDGKV-SAGPVDNNMSNTYNNQDG------NSSSTHEKTTRNYEVGKIEQKTVGA 351 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 K++++S +V +N L V D+ KI+S +V+ A + RGD IT+ Sbjct: 352 PGKVKKISASVTINDENLNPV-----DKDKINS-------LVAGAISYDENRGDIITVEG 399 Query: 411 MDFLE 415 + F E Sbjct: 400 LKFNE 404 >gi|333004041|gb|EGK23575.1| flagellar M-ring protein domain protein [Shigella flexneri K-272] gi|333017814|gb|EGK37121.1| flagellar M-ring protein domain protein [Shigella flexneri K-227] Length = 261 Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/231 (32%), Positives = 122/231 (52%), Gaps = 5/231 (2%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92 + + +A + +P Y L+ L D I L++ NI +R S+ +I VP+ V + Sbjct: 33 VAVMVALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGAIEVPADKVHE 92 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RTI++I + A Sbjct: 93 LRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRTIETIGPVKGA 150 Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVL 210 RVH+ MP F + P+ASV + + + AI HLV++AV L G+VT++ Sbjct: 151 RVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAGLPPGNVTLV 210 Query: 211 DSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRS 260 D G LLT +N R++ L ++ I+ I L+ +G N + Sbjct: 211 DQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIHA 261 >gi|59889767|emb|CAH19122.1| Lateral flagellar M-ring protein (FliF-like) [Escherichia coli] gi|284920031|emb|CBG33087.1| lateral flagellar M-ring protein (FliF-like) [Escherichia coli 042] Length = 548 Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 112/415 (26%), Positives = 198/415 (47%), Gaps = 51/415 (12%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 L +A+ ++ +L+ R +V+ LY + E V++I L + +RI Sbjct: 33 LAVAATAIIVSVLWTGNRGYVS------LYGRQENLPVSQIVTVLDGEKLSYRIDPQSGQ 86 Query: 83 ISVPSSMVGKARIHLAAQG----LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 I VP + K R+ LAA+G LPS GYEL DK G + F+Q + R+LEGE Sbjct: 87 ILVPEDALSKTRMTLAAKGVQAILPS-----GYELMDKDEVLGSSQFVQNVRYKRSLEGE 141 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARP--TASVMIR-----AINPSVYKSAEAI 191 +A++I S+ + +ARVH+ + + SF + P +ASV++R +N AI Sbjct: 142 LAQSIMSLDSVESARVHLALNEESSF-VVSDEPQNSASVVVRLHYGAKLN---MDQVNAI 197 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINK 247 HLV+ ++P L V+V+D G LLT A E K I++ IQ + ++ Sbjct: 198 VHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRASVAN 257 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAV 306 L + +G N+R +V+ +L++ T + Y K+ R L D + P S Sbjct: 258 VLDSLVGTGNYRVSVMPDLDLSTIDETQEHYGDAPKINREENVLDSDTNQVAMGVPGSL- 316 Query: 307 TVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 N P V+ ++ P +L + + +Y+ + + I H + ++RL++ Sbjct: 317 ---SNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHI--QHPGFAVKRLNV 371 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 AVV+N+ A + A++ +++ A GI+ +RGD +T++ ++F+ Sbjct: 372 AVVLNQ-------NAPAMKNWKPEQTAQLTALLNNAAGIDVQRGDNLTLSLLNFV 419 >gi|331671787|ref|ZP_08372583.1| flagellar M-ring protein FliF [Escherichia coli TA280] gi|331070776|gb|EGI42135.1| flagellar M-ring protein FliF [Escherichia coli TA280] Length = 552 Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 111/415 (26%), Positives = 199/415 (47%), Gaps = 47/415 (11%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 L +A+ ++ +L+ R +V+ LY + E V++I L + +RI Sbjct: 33 LAVAATAIIVSVLWTGNRGYVS------LYGRQENLPVSQIVTVLDGEKLSYRIDPQSGQ 86 Query: 83 ISVPSSMVGKARIHLAAQG----LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 I VP + K R+ LAA+G LPS GYEL DK G + F+Q + R+LEGE Sbjct: 87 ILVPEDELSKTRMTLAAKGVQAILPS-----GYELMDKDEVLGSSQFVQNVRYKRSLEGE 141 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARP--TASVMIR-----AINPSVYKSAEAI 191 +A++I S+ + +ARVH+ + + SF + P +ASV++R +N AI Sbjct: 142 LAQSIMSLDAVESARVHLALNEESSF-VVSDEPQNSASVVVRLHYGAKLN---MDQVNAI 197 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINK 247 HLV+ ++P L V+V+D G LLT A E K I++ IQ + ++ Sbjct: 198 VHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRASVAN 257 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAV 306 L + +G N+R +V+ +L++ T + Y K+ R L D + P S Sbjct: 258 VLDSLVGTGNYRVSVMPDLDLSTIDETQEHYGDAPKINREESVLDSDTNQVAMGVPGSL- 316 Query: 307 TVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 N P V+ ++ P +L + + +Y+ + + I H + ++RL++ Sbjct: 317 ---SNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHI--QHPGFAVKRLNV 371 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 AVV+N+ + ++ A++ +++ A GI+ +RGD +T++ ++F+ Sbjct: 372 AVVLNQNAPAMKNWKPEQTAQL---TAQLTALLNNAAGIDVQRGDNLTLSLLNFV 423 >gi|167725912|ref|ZP_02409148.1| flagellar MS-ring protein [Burkholderia pseudomallei DM98] gi|167905072|ref|ZP_02492277.1| flagellar MS-ring protein [Burkholderia pseudomallei NCTC 13177] gi|125657201|gb|ABN48689.1| flagella biosynthesis/type III secretory pathway lipoprotein [Burkholderia pseudomallei] Length = 531 Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 105/380 (27%), Positives = 191/380 (50%), Gaps = 34/380 (8%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 +Y L+ E ++ + L I +RI + + V S V +AR+ LAA+G+ ++ Sbjct: 34 NYKPLFGAREPVQLDDVVSTLDAQRIPYRIHPDTGQVLVARSDVARARMTLAARGV-TAK 92 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + G E D+ + G + F+Q++ R LE E+A++I ++ + ARVH+ + SF Sbjct: 93 AAPGLEQIDQDDPLGTSQFVQDVRFRRGLESELAQSIATLEPVERARVHLSIAKSSSFVM 152 Query: 167 IGARPTASVMIRAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EM 222 + +A+ ++ + P + E A+ +LVA +VPNL V+V+D G L+A ++ Sbjct: 153 MDGDKSAASVVLTLKPGRRLAKEQIAAVINLVAGSVPNLAPAKVSVVDQHGAFLSARVDL 212 Query: 223 ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPD 281 + ++ G I + ++ N+ LA LG+ NFR +V A +N D ++ RE Sbjct: 213 DGDLTGTD-EIAARFREDVTRNVEDLLAPSLGLGNFRVSVTALVNNDRVEETRE------ 265 Query: 282 SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEE------Q 335 + + ++ +A R+E ++ A+ V ++ S+R V +P S D + Q Sbjct: 266 -QFGEAPKVMNEATRNEQNRDRVALGVPGSL---SNRPVDVPASEPQADGGTQRAATTRQ 321 Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS--YLAEINKIVS 393 Y+ N I +LE+LS+AVV+N S +GK S L I++I+ Sbjct: 322 FAYDRNITQI--KRGRGQLEKLSVAVVLNN-------AVSPAKGKPWSPEQLRRIDEILR 372 Query: 394 AATGINSRRGDTITITSMDF 413 + GI+ +RGD + ++S+DF Sbjct: 373 SGLGIDKQRGDQLIVSSLDF 392 >gi|327254536|gb|EGE66152.1| flagellar M-ring protein FliF [Escherichia coli STEC_7v] Length = 548 Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 111/415 (26%), Positives = 198/415 (47%), Gaps = 51/415 (12%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 L +A+ ++ +L+ R +V+ LY + E V++I L + +RI Sbjct: 33 LAVAATAIIVSVLWTGNRGYVS------LYGRQENLPVSQIVTVLDGEKLTYRIDPQSGQ 86 Query: 83 ISVPSSMVGKARIHLAAQG----LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 I VP + K R+ LAA+G LPS GYEL DK G + FMQ + R+LEGE Sbjct: 87 ILVPEDELSKTRMTLAAKGVQAILPS-----GYELMDKDEVLGSSQFMQNVRYKRSLEGE 141 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARP--TASVMIR-----AINPSVYKSAEAI 191 +A++I S+ + +ARVH+ + + SF + P +ASV++R +N AI Sbjct: 142 LAQSIMSLDAVESARVHLALNEESSF-VVSDEPQNSASVVVRLHYGAKLN---MDQVNAI 197 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINK 247 HLV+ ++P L V+V+D G LLT A E K I++ IQ + ++ Sbjct: 198 VHLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRASVAN 257 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAV 306 L + +G N+R +V+ +L++ T + Y K+ R L D + P S Sbjct: 258 VLDSLVGSGNYRVSVMPDLDLSTIDETQEHYGDAPKINREESVLDSDTNQVAMGVPGSL- 316 Query: 307 TVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 N P ++ ++ P +L + + +Y+ + + I H + ++RL++ Sbjct: 317 ---SNRPPIAANQMTNGAEENRSPEALSKHSESKRDYSYDRSVQHI--QHPGFAVKRLNV 371 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 AVV+N+ A + ++ +++ A GI+++RGD +T++ ++F+ Sbjct: 372 AVVLNQ-------NAPALKNWKPEQTTQLTALLNNAAGIDAQRGDNLTLSLLNFV 419 >gi|260866399|ref|YP_003232801.1| putative lateral flagellar basal-body M-ring and collar protein [Escherichia coli O111:H- str. 11128] gi|257762755|dbj|BAI34250.1| predicted lateral flagellar basal-body M-ring and collar protein [Escherichia coli O111:H- str. 11128] gi|323178508|gb|EFZ64086.1| flagellar M-ring protein FliF [Escherichia coli 1180] Length = 548 Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 112/415 (26%), Positives = 199/415 (47%), Gaps = 51/415 (12%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 L +A+ ++ +L+ R +V+ LY + E V++I L + +RI Sbjct: 33 LAVAATAIIVSVLWTGNRGYVS------LYGRQENLPVSQIVTVLDGEKLTYRIDPQSGQ 86 Query: 83 ISVPSSMVGKARIHLAAQG----LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 I VP + K R+ LAA+G LPS GYEL DK G F+Q + R+LEGE Sbjct: 87 ILVPEEALSKTRMTLAAKGVQAILPS-----GYELMDKDEVLGSRQFVQNVRYKRSLEGE 141 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARP--TASVMIR-----AINPSVYKSAEAI 191 +A++I S+ + +ARVH+ + + SF + P +ASV++R +N AI Sbjct: 142 LAQSIMSLDAVESARVHLALNEESSF-VVSDEPQNSASVVVRLHYGAKLN---MDQVNAI 197 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINK 247 HLV+ ++P L V+V+D +G LLT A E K I++ IQ + ++ Sbjct: 198 VHLVSGSIPGLHASKVSVVDQSGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTHASVAN 257 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAV 306 L + +G N+R +V+ +L++ T + Y K+ R L D + P S Sbjct: 258 VLDSLVGSGNYRVSVMPDLDLSTIDETQEHYGDAPKINREESVLDSDTNQVAMGVPGSL- 316 Query: 307 TVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 N P V+ ++ P +L + + +Y+ + + I H + ++RL++ Sbjct: 317 ---SNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHI--QHPGFAVKRLNV 371 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 AVV+N+ A + A++ +++ A GI+++RGD +T++ ++F+ Sbjct: 372 AVVLNQ-------NAPALKNWKPEQTAQLTALLNNAAGIDAQRGDNLTLSLLNFV 419 >gi|126442789|ref|YP_001061229.1| flagellar MS-ring protein [Burkholderia pseudomallei 668] gi|134280829|ref|ZP_01767539.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 305] gi|254182909|ref|ZP_04889502.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1655] gi|126222280|gb|ABN85785.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 668] gi|134247851|gb|EBA47935.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 305] gi|184213443|gb|EDU10486.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1655] Length = 532 Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 105/380 (27%), Positives = 191/380 (50%), Gaps = 34/380 (8%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 +Y L+ E ++ + L I +RI + + V S V +AR+ LAA+G+ ++ Sbjct: 35 NYKPLFGAREPVQLDDVVSTLDAQRIPYRIHPDTGQVLVARSDVARARMTLAARGV-TAK 93 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + G E D+ + G + F+Q++ R LE E+A++I ++ + ARVH+ + SF Sbjct: 94 AAPGLEQIDQDDPLGTSQFVQDVRFRRGLESELAQSIATLEPVERARVHLSIAKSSSFVM 153 Query: 167 IGARPTASVMIRAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EM 222 + +A+ ++ + P + E A+ +LVA +VPNL V+V+D G L+A ++ Sbjct: 154 MDGDKSAASVVLTLKPGRRLAKEQIAAVINLVAGSVPNLAPAKVSVVDQHGAFLSARVDL 213 Query: 223 ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPD 281 + ++ G I + ++ N+ LA LG+ NFR +V A +N D ++ RE Sbjct: 214 DGDLTGTD-EIAARFREDVTRNVEDLLAPSLGLGNFRVSVTALVNNDRVEETRE------ 266 Query: 282 SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEE------Q 335 + + ++ +A R+E ++ A+ V ++ S+R V +P S D + Q Sbjct: 267 -QFGEAPKVMNEATRNEQNRDRVALGVPGSL---SNRPVDVPASEPQADGGTQRAATTRQ 322 Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS--YLAEINKIVS 393 Y+ N I +LE+LS+AVV+N S +GK S L I++I+ Sbjct: 323 FAYDRNITQI--KRGRGQLEKLSVAVVLNN-------AVSPAKGKPWSPEQLRRIDEILR 373 Query: 394 AATGINSRRGDTITITSMDF 413 + GI+ +RGD + ++S+DF Sbjct: 374 SGLGIDKQRGDQLIVSSLDF 393 >gi|90415352|ref|ZP_01223286.1| flagellar protein [marine gamma proteobacterium HTCC2207] gi|90332675|gb|EAS47845.1| flagellar protein [marine gamma proteobacterium HTCC2207] Length = 599 Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 124/464 (26%), Positives = 203/464 (43%), Gaps = 41/464 (8%) Query: 21 RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80 R + A + + + +F+ A ++ P Y +Y L SD AL+ A+ RI + Sbjct: 57 RKAMPAIIAFLSVAVFLIAYSWMQDPVYRTVYPGLSESDRQAAFEALAGADFKARIDSST 116 Query: 81 SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140 + VP S +ARI LAA+GLP + G S + FM+++ V A+E E+A Sbjct: 117 GELKVPDSRYHEARIFLAARGLPQEGTTGGISGLSDEASMTSSQFMEQVRYVSAMEQELA 176 Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAA 198 R+I I+ I +ARVH+ P F + ASV++ + + EAI H+V+++ Sbjct: 177 RSITQINTIRSARVHLASPKQSVFVRNRTPAKASVVVSPYPGRLVSRSQVEAITHMVSSS 236 Query: 199 VPNLDMGDVTVLDSTGKLLT-ANEMERNILGKS-LSIVQAIQHEIEMNINKALAAFLGVD 256 VP L DV V+D GKLLT AN L + + Q ++ I+ L +G+ Sbjct: 237 VPYLAAEDVVVVDQRGKLLTDANNFASMQLNSAQMEHKQRLEETYRNRIDALLMPVVGMG 296 Query: 257 NFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET-SQPESAVTVEQNMPHV 315 N R+ V +++ ++ YD ++ ++ RSE S + AV+ + +P Sbjct: 297 NVRAEVDIQVDYTEEESTYEEYDGNNNGPKA--------RSEVLSLDQDAVSSAEGIPGA 348 Query: 316 SDRKVP----------LPRSLEN----TDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 + VP L S E+ T NYE++ +ER+S+AV Sbjct: 349 TTNTVPLNATAILNGQLDGSAEDGGLRTSSSTTTRNYEMDRTVRHVKRQGGSVERISVAV 408 Query: 362 VVNKGRLTEVLGRSADQGKIDSY----LAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 V+N+ E G + G+ + L + +V G + RGD +TI S F Sbjct: 409 VINEPVAQE--GGVNEAGESKGFSELELERFSDLVKGVVGFDGERGDVVTIVSATFETPV 466 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461 F S DI VI+ + L ++ F+ L +R Sbjct: 467 PFKS--------DIAWYENGQVISGIKTLGAAIMFLFILLSVVR 502 >gi|311085815|gb|ADP65897.1| flagellar MS-ring protein [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] Length = 489 Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 103/385 (26%), Positives = 190/385 (49%), Gaps = 34/385 (8%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110 +Y L D I L+E I ++ +D+ I VP V + R+ LA LP S G Sbjct: 1 MYNHLSNEDSGSIINELNEMKIPYQFTDSDGPILVPKDKVYEIRLRLAENNLPRGGS-IG 59 Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170 +EL DK FG++ + ++I RALEGE+ARTI+ I+ + AR+HI F + + Sbjct: 60 FELLDK-EKFGISQYNEQINYHRALEGELARTIKKINSVKNARIHIAFSKSSLFLQDKKK 118 Query: 171 PTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN 225 +AS+++ R +N AI HL+++++ +L + ++T++D +GKLL +E + Sbjct: 119 SSASIILELQPGRNLNTG---QINAIMHLISSSISDLPVENITIVDQSGKLLNQTSVEYD 175 Query: 226 ILGKS-LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV 284 + S + I+ I L +G+ N + V A+++ + Q+ + Y P+S Sbjct: 176 QVNDSQFKYTEEIETRYRNRIKNILEPLVGIGNIYAQVTAQIDFNAQEKTQEKYSPNSDH 235 Query: 285 E-RSIR-----LSKDAQRSETSQPESAVTVEQNMPHVS-DRKVPLPRSLENT----DKK- 332 + +SIR + + ++S Q E+ + + + HV + + ++L+N D K Sbjct: 236 KNQSIRSHQIIIHNEIEKSNI-QEETPIPLSNSNNHVYFNNNIKNSKNLKNNYIPVDSKI 294 Query: 333 --EEQSNYEINTKSIATTHDNYKLERLSIAVVVN--KGRLTEVLGRSADQGKIDSYLAEI 388 + NYE+N T + +++RLS AV+VN K + + + S + + I Sbjct: 295 NRDNTVNYELNHSVSHTKMNIGEIKRLSAAVIVNFSKDKNGKFVPLSTQK------IKNI 348 Query: 389 NKIVSAATGINSRRGDTITITSMDF 413 ++ A G + RGD++ + + F Sbjct: 349 EHLIREAIGYSKARGDSVHLVNASF 373 >gi|300817286|ref|ZP_07097504.1| flagellar M-ring protein FliF [Escherichia coli MS 107-1] gi|300530262|gb|EFK51324.1| flagellar M-ring protein FliF [Escherichia coli MS 107-1] Length = 548 Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 111/414 (26%), Positives = 197/414 (47%), Gaps = 51/414 (12%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 L +A+ ++ +L+ R +V+ LY + E V++I L + +RI Sbjct: 33 LAVAATAIIVSVLWTGNRGYVS------LYGRQENLPVSQIVTVLDGEKLTYRIDPQSGQ 86 Query: 83 ISVPSSMVGKARIHLAAQG----LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 I VP + K R+ LAA+G LPS GYEL DK G + F+Q + R+LEGE Sbjct: 87 ILVPEEALSKTRMTLAAKGVQAILPS-----GYELMDKDEVLGSSQFVQNVRYKRSLEGE 141 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARP--TASVMIR-----AINPSVYKSAEAI 191 +A++I S+ + +ARVH+ + + SF + P +ASV++R +N AI Sbjct: 142 LAQSIMSLDAVESARVHLALNEESSF-VVSDEPQNSASVVVRMHYGAKLN---MDQVNAI 197 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINK 247 HLV+ ++P L V+V+D G LLT A E K I++ IQ + ++ Sbjct: 198 VHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRASVAN 257 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAV 306 L + +G N+R +V+ +L++ T + Y K+ R L D + P S Sbjct: 258 VLDSLVGTGNYRVSVMPDLDLSTIDETQEHYGDAPKINREESVLDSDTNQVAMGVPGSL- 316 Query: 307 TVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 N P V+ ++ P +L + + +Y+ + + I H + ++RL++ Sbjct: 317 ---SNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHI--QHPGFAVKRLNV 371 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVV+N+ A + ++ +++ A GI+++RGD +T++ ++F Sbjct: 372 AVVLNQ-------NAPALKNWKPEQTTQLTALLNNAAGIDAQRGDNLTLSLLNF 418 >gi|254522751|ref|ZP_05134806.1| flagellar M-ring protein FliF [Stenotrophomonas sp. SKA14] gi|219720342|gb|EED38867.1| flagellar M-ring protein FliF [Stenotrophomonas sp. SKA14] Length = 547 Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 134/550 (24%), Positives = 248/550 (45%), Gaps = 32/550 (5%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 Q+F SL TR L L ++I V + ++ F+ P LY L+ + L Sbjct: 17 QWFDRLQSLQITRRLGLMAMIAVAVAAGLSVFFWSQKPGMVPLYTGLDQKATAEATDLLR 76 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 A I F + I+VP + AR+ LA GL + S G+EL ++ FG++ F++ Sbjct: 77 AAQIPFALDPATGGITVPEKNLHDARLKLAGSGL-TDSGKLGFELMERDPGFGVSQFVES 135 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI--RAINPSVYK 186 ALE E++RTI ++ + +RVH+ +P +F + +ASV + R Sbjct: 136 ARYQHALETELSRTINTLRPVRDSRVHLAIPKPSAFTRQRDVASASVTLELRGGQQLERS 195 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN-- 244 +AI H+VAA++P+L VTV+D +G++L+ ++ + Q + E N Sbjct: 196 QVDAIVHMVAASIPDLAPERVTVVDQSGRMLSVSDPNSEAAVNAAQFEQVRRQETSFNQR 255 Query: 245 INKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 I + L G V +++ T++ RE+ Y+ + + RS ++S+++ + T P+ Sbjct: 256 IRELLEPMTGPGRVNPEVSVDMDFSVTEEAREL-YNGEPQKLRSEQMSENS--TTTPGPQ 312 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 N P ++ + K + NYE++ T +++R+S+AV+V Sbjct: 313 GVPGATSNSPPGQQAAPATAQAPTESSKNATR-NYELDRTLQHTRQPAGRIKRVSVAVLV 371 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 + G+ A Q + L + +V A G N+ RGDT+++ + F+ + G Sbjct: 372 DNVPRAGANGKVAPQPLSAAELTRVEALVKQAVGFNAERGDTVSVMNAPFVRDTTPVEGP 431 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSP 482 ++ ++ H +A L+G ++V L LR L I KK + + L P Sbjct: 432 ---AWWELPWVH-----DAGRMLLGAVVVLALLFGVLRPALRAITGQKKND---EQALEP 480 Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFS--HSRNLQSRINSYVSKQSDLRLL-HMIEINE 539 L+ +D + L + D S L ++SY + LR+ ++ + Sbjct: 481 ----HTADVQLVDDDGMPLPALGADRASLGGPDALALPVDSYEER---LRMAREAVKTDS 533 Query: 540 ERFAKILRKW 549 +R A++++ W Sbjct: 534 KRVAQVVKGW 543 >gi|154174065|ref|YP_001408875.1| flagellar MS-ring protein [Campylobacter curvus 525.92] gi|112803763|gb|EAU01107.1| flagellar M-ring protein FliF [Campylobacter curvus 525.92] Length = 567 Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 110/385 (28%), Positives = 190/385 (49%), Gaps = 32/385 (8%) Query: 48 YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 Y L+ + +D I L++ ++ +++++ G+ I VP+ V K RI +A G+P S Sbjct: 53 YSVLFENISPNDSALIIDQLNKDSVSYKLANEGT-ILVPTGDVYKERIAVATLGIPKESK 111 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 G+E+FDK FG T Q + RALEGE+ARTI+S+S I A V I +P F + Sbjct: 112 -IGFEIFDK-QEFGSTDAEQRVKFQRALEGELARTIESLSSIQKATVRIAIPKESVFTER 169 Query: 168 GARPTASVMIRAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEM 222 + PTAS+++ + P V SA+ I++LVAAAV NL+ +V +++ G L E Sbjct: 170 QSPPTASIVVE-LKPGVSLSAKQIFGIKNLVAAAVTNLNTENVKIVNQDGVALGEEDGEF 228 Query: 223 ERNILGKSLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPD 281 + +++ + + + + E I LA + G D + V + + D + + YDP+ Sbjct: 229 DSDMIAQQIRYKREFETNYEQKIINVLAPIVGGTDRVVAKVNIDFDFDKKDSQSETYDPN 288 Query: 282 SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV---SDRKVPLPRSLENTDKKEEQSNY 338 + V + + Q S ++ + N+ V SD + E +K +Q+NY Sbjct: 289 NVVRSESNIEEKRQGSAPNEIQGVPGAVSNIGPVQGLSDSNIK-----EQYNKSSQQTNY 343 Query: 339 EINTKSIATTHDNYKLERLSIAVVVN---KGRLTEVLGRSAD-------QGKIDSYLAEI 388 EI+ K + R+S AVVV+ + + E + D Q + DS I Sbjct: 344 EISKKITNIKGQFASIVRVSAAVVVDGLYQPKKDEAGNPTGDIEYVALTQAQKDS----I 399 Query: 389 NKIVSAATGINSRRGDTITITSMDF 413 ++ A G +++RGD +T+ + +F Sbjct: 400 TNLIKQAIGYSAQRGDEVTLDNFEF 424 >gi|77463624|ref|YP_353128.1| flagellar FliF M-ring protein [Rhodobacter sphaeroides 2.4.1] gi|77388042|gb|ABA79227.1| Flagellar FliF M-ring protein [Rhodobacter sphaeroides 2.4.1] Length = 570 Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 118/442 (26%), Positives = 201/442 (45%), Gaps = 48/442 (10%) Query: 2 AILDQLLQFF-KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 +++Q+ +F + G ILILA +L +A + P LY L ++ Sbjct: 23 GMVEQIRRFGDQPGLRRAMPAILILAVTVLA-----LAGWILLREPARVTLYPGLPEAEK 77 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 R+ +L+ I I + ++VP + +AR+ LAAQGLP + L D Sbjct: 78 ARVIDSLTGGGIAAVIDERTGEVAVPGADYHRARMLLAAQGLPQGLPDGNALLSDL--PM 135 Query: 121 GLTSFMQEITRVR-ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 G TS E R+R A E ++AR+I IS + AARVH+ +P+ +F + P ASV ++ Sbjct: 136 G-TSKSVETARLRQAQELDLARSITEISAVSAARVHLALPERSAFLRESQPPRASVFLQI 194 Query: 180 INPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI 237 + A EAI +LV+++VP + DVTV+D G+LL+ + +L + + Sbjct: 195 VPGRTLDGAQVEAIVNLVSSSVPGMARQDVTVVDQMGRLLSRGSDDPAVLLND----RQL 250 Query: 238 QHEIEMN------INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 QH +++ I L G N V +++ Q+IRE DPD R+ L+ Sbjct: 251 QHRVQLETLYRNRIESLLTPIAGPGNLAVQVTIDMDFTRQEIREEQVDPD----RTALLA 306 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE---------------NTDKKEEQS 336 + +Q ET+ P++ + +P P +LE + + Sbjct: 307 EQSQIEETADPQA-----RGIPGAVSNSPPPEAALEAGAPPTAAGEAATPMRSRSQNSTR 361 Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL--AEINKIVSA 394 N+E++ K T ++ R+S AVVV +A + A++ ++ + Sbjct: 362 NFEVSRKVETTLPATARIARVSAAVVVRAQPQPAATDPAAPPPPLLPEALKADLERLTRS 421 Query: 395 ATGINSRRGDTITITSMDFLEN 416 A G ++ RGD +TIT+ FL+ Sbjct: 422 AVGFDADRGDVVTITAQPFLDT 443 >gi|323171047|gb|EFZ56696.1| flagellar M-ring protein FliF [Escherichia coli LT-68] Length = 548 Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 109/411 (26%), Positives = 199/411 (48%), Gaps = 43/411 (10%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 L +A+ ++ +L+ R +V+ LY + E V++I L + +RI Sbjct: 33 LAVAATAIIVSVLWTGNRGYVS------LYGRQENLPVSQIVTVLDGEKLSYRIDPQSGQ 86 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP + K R+ LAA+G+ + SGY+L DK G + F+Q + R+LEGE+A++ Sbjct: 87 ILVPEEALSKTRMTLAAKGV-QAILPSGYDLMDKDEVLGSSQFVQNVRYKRSLEGELAQS 145 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARP--TASVMIR-----AINPSVYKSAEAIRHLV 195 I S+ + +ARVH+ + + SF + P +ASV++R +N AI HLV Sbjct: 146 IMSLDAVESARVHLALNEESSF-VVSDEPQNSASVVVRLHYGAKLN---MDQVNAIVHLV 201 Query: 196 AAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINKALAA 251 + ++P L V+V+D G LLT A E K I++ IQ + ++ L + Sbjct: 202 SGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRASVANVLDS 261 Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQ 310 +G N+R +V+ +L++ T + Y K+ R L D + P S Sbjct: 262 LVGSGNYRVSVMPDLDLSTIDETQEHYGDAPKINREESVLDSDTNQVAMGVPGSL----S 317 Query: 311 NMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 N P V+ ++ P +L + + +Y+ + + I H + ++RL++AVV+ Sbjct: 318 NRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHI--QHPGFAVKRLNVAVVL 375 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 N+ A + A++ +++ A GI+++RGD +T++ ++F+ Sbjct: 376 NQ-------NAPALKNWKPEQTAQLTALLNNAAGIDAQRGDNLTLSLLNFV 419 >gi|323975944|gb|EGB71038.1| flagellar M-ring protein FliF [Escherichia coli TW10509] Length = 548 Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 108/411 (26%), Positives = 199/411 (48%), Gaps = 43/411 (10%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 L +A+ ++ +L+ R +V+ LY + E V++I L + +RI Sbjct: 33 LAVAATAIIVSVLWTGNRGYVS------LYGRQENLPVSQIVTVLDGEKLTYRIDPQSGQ 86 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP + K R+ LAA+G+ + SGYEL DK G + F+Q + R+LEGE+A++ Sbjct: 87 ILVPEDELSKTRMTLAAKGV-QAILPSGYELMDKDEMLGSSQFVQNVRYKRSLEGELAQS 145 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARP--TASVMIR-----AINPSVYKSAEAIRHLV 195 I S+ + +ARVH+ + + SF + P +ASV++R +N AI HLV Sbjct: 146 IMSLDAVESARVHLALNEESSF-VVSDEPQNSASVVVRLHYGAKLN---MDQVNAIVHLV 201 Query: 196 AAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINKALAA 251 + ++P L V+V+D G LLT A E K I++ IQ + ++ L + Sbjct: 202 SGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRASVANVLDS 261 Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQ 310 +G+ N+R +V+ +L++ T + Y K+ R L D + P S Sbjct: 262 LVGMGNYRVSVMPDLDLSTIDETQEHYGDAPKINREESVLDSDTNQVAMGVPGSL----S 317 Query: 311 NMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 N P ++ ++ P +L + + +Y+ + + I H + ++RL++AVV+ Sbjct: 318 NRPPIAANQMTNGAEENRSPEALSKHSESKRDYSYDRSVQHI--QHPGFAVKRLNVAVVL 375 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 N+ A + ++ +++ A GI+++RGD +T++ ++F+ Sbjct: 376 NQ-------NAPALKNWKPEQTTQLTALLNNAAGIDAQRGDNLTLSLLNFV 419 >gi|227329938|ref|ZP_03833962.1| flagellar MS-ring protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 574 Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 77/264 (29%), Positives = 140/264 (53%), Gaps = 11/264 (4%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y LY + D I L++ NI +R ++NG +I +P++ V + R+ LA Sbjct: 46 LWAKGPDYRVLYSNINDRDGGAIVSELTKLNIPYRFAENGGAIMIPAANVYETRLRLAQL 105 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F ++I RALEGE++RTI+++ + ARVH+ +P Sbjct: 106 GLPKGGA-VGFELLDQ-EKFGISQFSEQINYQRALEGELSRTIETLGPVQNARVHLAIPK 163 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + P++SV + RA++ S I ++V+++V L +VTV+D TG+ Sbjct: 164 PSLFVREQKAPSSSVTLTLQPGRALDEGQINS---IVYMVSSSVAGLPPDNVTVVDQTGR 220 Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT A R++ L ++ + I +A +G+ N + V A+++ ++ Sbjct: 221 LLTQAGGSGRDLNAAQLKYSNEVEAMYQRRIESIIAPMVGMGNVHAQVTAQIDFSAREQT 280 Query: 275 EIVYDPDSKVERSIRLSKDAQRSE 298 + Y P+ +++ S+ +SE Sbjct: 281 DEQYQPNQPPDKAAVRSQQTSQSE 304 >gi|118475241|ref|YP_891471.1| flagellar MS-ring protein [Campylobacter fetus subsp. fetus 82-40] gi|118414467|gb|ABK82887.1| flagellar M-ring protein FliF [Campylobacter fetus subsp. fetus 82-40] Length = 568 Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 114/446 (25%), Positives = 205/446 (45%), Gaps = 47/446 (10%) Query: 29 ILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSS 88 LV + L+ ++ Y L+ L +D +I L + + +++++ G+ I VP+ Sbjct: 35 FLVFLSLYKSSSSGSEYDGYSILFRNLNPADSAQIIAQLEKDGVTYKLANEGT-ILVPTK 93 Query: 89 MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISG 148 V K RI +A+ G+ N G+E+FDK FG T Q + RA++GE+++TI+ + Sbjct: 94 SVYKERIAVASLGIMKDGKN-GFEIFDK-QDFGATDNEQRVKFQRAIQGELSKTIEGLEP 151 Query: 149 IVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGD 206 I A V+I P F + PTASV+++ + K + I+ +VA +V NL D Sbjct: 152 IEKATVYIAFPKDSVFTERQVPPTASVVVKIKDGEKLNRKQIDGIKRIVAGSVTNLKAED 211 Query: 207 VTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVV 263 V ++ G + +E +E ++ + + ++ E I + F G D + V Sbjct: 212 VKIVTQDGVAVGDDEIALESELVASQIKYKKEFENTYEQKIIDMIGKFTGGRDKVTAKVS 271 Query: 264 AELNMDTQQIREIVYDPDS--KVERSIRLSKDAQRSETSQPESAVTVEQNMPHVS----- 316 E + + + +YDP+S + E++I ++ E QP+ V + ++ Sbjct: 272 IEFDFSVKDSQSEIYDPNSVIRSEQNIE-----EKREGKQPKEVGGVPGAVSNIGPVEGL 326 Query: 317 DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA 376 D+ P +N +NYEI+ K I ++R++ AVVV+ G+ Sbjct: 327 DQNKPDELYTKNV----ANTNYEISKKIIKVKDQYATIKRVTAAVVVD--------GKYE 374 Query: 377 DQGKIDSYLA-----------EINKI---VSAATGINSRRGDTITITSMDFLENQLFNSG 422 + K D L+ EINKI V G NS RGD +T+++ +F + N+ Sbjct: 375 REKKEDGSLSDTIAYVPLSEDEINKIKSLVEQTIGYNSTRGDEVTVSNFEFKKAGNLNAN 434 Query: 423 TVQVS-FMDILSRHFATVINALVFLV 447 T ++ F D + +I L+ L+ Sbjct: 435 TTKIGIFYDSYLKPLTPIIKYLIVLL 460 >gi|330505661|ref|YP_004382530.1| flagellar MS-ring protein [Pseudomonas mendocina NK-01] gi|328919947|gb|AEB60778.1| flagellar MS-ring protein [Pseudomonas mendocina NK-01] Length = 560 Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 112/424 (26%), Positives = 197/424 (46%), Gaps = 48/424 (11%) Query: 22 ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81 + ++A+++ V ++ ++ + + + LY E + L I++R+ Sbjct: 25 LAVIAALLAVGVVFYL----WRDQGSFRPLYGAGEAYPAAEVMQVLDGDAINYRLHPQSG 80 Query: 82 SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 + V +G+AR+ LAA+G+ +GYELFDK G + F+Q++ R+LEGE+AR Sbjct: 81 QVLVREDQLGRARMLLAAKGV-QVKVPAGYELFDKDEPLGTSQFVQDVRLKRSLEGELAR 139 Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPT--ASVMIRAINPSVYKSAE---AIRHLVA 196 T+ ++ G+ ARVH+ + + SF +G R ASVM++ + P + E AI +LVA Sbjct: 140 TVMALKGVEGARVHLALQESSSF-VVGKREPGKASVMLQ-LAPGYKLTPEQVSAIVNLVA 197 Query: 197 AAVPNLDMGDVTVLDSTGKLLTANEMERNI--LG---KSLSIVQAIQHEIEMNINKALAA 251 +VP L+ G+V V+D G LL+ R I LG ++ +V Q + N LA Sbjct: 198 GSVPQLEAGNVQVVDQYGALLS-----RGIDTLGGPVQNWQVVDDYQSKAVANAEAVLAP 252 Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311 LG N+R +V A+++ ++ Y S RL + R E+ + A+ V + Sbjct: 253 VLGGGNYRISVSADIDFSQKEETFQAYG------ESPRLRNEVVRDESVLDQLALGVPGS 306 Query: 312 M-------PHVSDRKVPLPRSLENTD------KKEEQSNYEINTKSIATTHDNYKLERLS 358 + ++++ EN + +KE + + H + L + S Sbjct: 307 LANRPPQPAPPANQQAQAGAQGENANQAATSLRKESNRQLDYDQSITHVKHAPFSLRQQS 366 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 IAVV+N E G E+ +V +A G N RGD +T++ F + + Sbjct: 367 IAVVLNAAVAPE-------GGWTPEAREELAAMVKSAVGFNQARGDLLTLSVFPFTDAGI 419 Query: 419 FNSG 422 +G Sbjct: 420 GGAG 423 >gi|301646796|ref|ZP_07246650.1| flagellar M-ring protein FliF [Escherichia coli MS 146-1] gi|307136844|ref|ZP_07496200.1| flagellar MS-ring protein [Escherichia coli H736] gi|331640699|ref|ZP_08341846.1| flagellar M-ring protein FliF [Escherichia coli H736] gi|301075031|gb|EFK89837.1| flagellar M-ring protein FliF [Escherichia coli MS 146-1] gi|315616841|gb|EFU97458.1| flagellar M-ring protein FliF [Escherichia coli 3431] gi|331040073|gb|EGI12281.1| flagellar M-ring protein FliF [Escherichia coli H736] Length = 548 Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 111/414 (26%), Positives = 197/414 (47%), Gaps = 51/414 (12%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 L +A+ ++ +L+ R +V+ LY + E V++I L + +RI Sbjct: 33 LAVAATAIIVSVLWTGNRGYVS------LYGRQENLPVSQIVTVLDGEKLSYRIDPQSGQ 86 Query: 83 ISVPSSMVGKARIHLAAQG----LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 I VP + K R+ LAA+G LPS GYEL DK G + F+Q + R+LEGE Sbjct: 87 ILVPEDELSKTRMTLAAKGVQAILPS-----GYELMDKDEVLGSSQFVQNVRYKRSLEGE 141 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARP--TASVMIR-----AINPSVYKSAEAI 191 +A++I S+ + +ARVH+ + + SF + P +ASV++R +N AI Sbjct: 142 LAQSIMSLDAVESARVHLALNEESSF-VVSDEPQNSASVVVRLHYGAKLN---MDQVNAI 197 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINK 247 HLV+ ++P L V+V+D G LLT A E K I++ IQ + ++ Sbjct: 198 VHLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRASVAN 257 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAV 306 L + +G N+R +V+ +L++ T + Y K+ R L D + P S Sbjct: 258 VLDSLVGSGNYRVSVMPDLDLSTIDETQEHYGDAPKINREESVLDSDTNQVAMGVPGSL- 316 Query: 307 TVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 N P V+ ++ P +L + + +Y+ + + I H + ++RL++ Sbjct: 317 ---SNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHI--QHPGFAVKRLNV 371 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 AVV+N+ A + ++ +++ A GI+++RGD +T++ ++F Sbjct: 372 AVVLNQ-------NAPALKNWKPEQTTQLTALLNNAAGIDAQRGDNLTLSLLNF 418 >gi|227112541|ref|ZP_03826197.1| flagellar MS-ring protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 574 Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 77/264 (29%), Positives = 140/264 (53%), Gaps = 11/264 (4%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y LY + D I L++ NI +R ++NG +I +P++ V + R+ LA Sbjct: 46 LWAKGPDYRVLYSNINDRDGGAIVGELTKLNIPYRFAENGGAIMIPAANVYETRLRLAQL 105 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F ++I RALEGE++RTI+++ + ARVH+ +P Sbjct: 106 GLPKGGA-VGFELLDQ-EKFGISQFSEQINYQRALEGELSRTIETLGPVQNARVHLAIPK 163 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + P++SV + RA++ S I ++V+++V L +VTV+D TG+ Sbjct: 164 PSLFVREQKAPSSSVTLTLQPGRALDEGQINS---IVYMVSSSVAGLPPDNVTVVDQTGR 220 Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT A R++ L ++ + I +A +G+ N + V A+++ ++ Sbjct: 221 LLTQAGGSGRDLNAAQLKYSNEVEAMYQRRIESIIAPMVGMGNVHAQVTAQIDFSAREQT 280 Query: 275 EIVYDPDSKVERSIRLSKDAQRSE 298 + Y P+ +++ S+ +SE Sbjct: 281 DEQYQPNQPPDKAAVRSQQTSQSE 304 >gi|300936110|ref|ZP_07151050.1| flagellar M-ring protein FliF [Escherichia coli MS 21-1] gi|300458730|gb|EFK22223.1| flagellar M-ring protein FliF [Escherichia coli MS 21-1] Length = 551 Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 112/412 (27%), Positives = 197/412 (47%), Gaps = 42/412 (10%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 L +A+ ++ +L+ R +V+ LY + E V++I L + +RI Sbjct: 33 LAVAATAIIVSVLWTGNRGYVS------LYGRQENLPVSQIVTVLDGEKLSYRIDPQSGQ 86 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP + K R+ LAA+G+ + SGYEL DK G + F+Q + R+LEGE+A++ Sbjct: 87 ILVPEDELSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSSQFVQNVRYKRSLEGELAQS 145 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARP--TASVMIR-----AINPSVYKSAEAIRHLV 195 I S+ + +ARVH+ + + SF + P +ASV++R +N AI HLV Sbjct: 146 IMSLDAVESARVHLALNEESSF-VVSDEPQNSASVVVRLHYGAKLN---MDQVNAIVHLV 201 Query: 196 AAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINKALAA 251 + ++P L V+V+D G LLT A E K I++ IQ + ++ L + Sbjct: 202 SGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRASVANVLDS 261 Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQ 310 +G N+R +V+ +L++ + Y K+ R L D + P S Sbjct: 262 LVGSGNYRVSVMPDLDLSNIDETQEHYGDAPKINREENVLDSDTNQVAMGVPGSL----S 317 Query: 311 NMPHVSDRKV---PLP----RSLENTDK-KEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 N P V+ +V +P RS E K E + +Y + H + ++RL++AVV Sbjct: 318 NRPPVAPNQVTNGAMPADENRSPEALSKHSESKRDYSYDRSVQHIQHPGFTVKRLNVAVV 377 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 +N+ A + ++ +++ A GI+++RGD +T++ ++F+ Sbjct: 378 LNQ-------NAPALKNWKPEQTTQLTALLNNAAGIDAQRGDNLTLSLLNFV 422 >gi|222824351|ref|YP_002575925.1| flagellar MS-ring protein FliF [Campylobacter lari RM2100] gi|222539572|gb|ACM64673.1| flagellar MS-ring protein FliF [Campylobacter lari RM2100] Length = 561 Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 134/480 (27%), Positives = 229/480 (47%), Gaps = 45/480 (9%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIM-----LFMAARFFVNSPHYDNLYVKLEV 57 IL Q+ Q +++ SL R RI+I AS+++V LF + + Y L+ Sbjct: 6 ILHQVGQLYQN-LSL-RQRIIIAASIVVVVGFLVFLTLFRSGSTVASEAGYSVLFENANT 63 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 SD I L ++ + + + + G+ I VP+ V K R+ +A+ GL + G+ELFDK Sbjct: 64 SDSAMIVTQLEKSGVPYILRNEGT-ILVPNDQVYKQRLAIASAGLLPKDNKVGFELFDK- 121 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 FG T Q++ RALEGE+ARTI+S+ I +A VHI F + PTASV + Sbjct: 122 QEFGATEAEQKVKYQRALEGELARTIESLEPIHSATVHIAFAKDTLFTQQQVPPTASVAL 181 Query: 178 RAINPSV---YKSAEAIRHLVAAAVPNLDMGDVTVLDSTG-KLLTANEMERNILGKSLSI 233 I + K I++L+A++V L +V ++D G L E +++ + Sbjct: 182 -TIKEGLKLNKKQIMGIKNLIASSVTKLTPENVKIMDQKGIPLDDEGAFESDLIAAQIKY 240 Query: 234 VQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKV--ERSIRL 290 + ++E+E I ++A F G D + V + + ++ + VYDP++ V E+++ Sbjct: 241 KRDQEYELEQKIVASIALFAGGYDRVVAKVSIDYDFSKEESQSEVYDPNTVVRSEQTLEE 300 Query: 291 SKDAQRSETSQP-ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 K+ + + Q AV+ + + D+ + E K + +N EI+ K TT Sbjct: 301 HKEGYKDKEIQGVPGAVSNIGPVEGLDDKG-----AREVYTKNQTTTNNEISKKITNTTK 355 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKI--------DSYLAEINKIVSAATGINSR 401 ++R+S AVVV+ G+ + + DQG I D + I + A G N Sbjct: 356 QFATIKRISAAVVVD-GKYKVI---TDDQGNITNEYMPLSDKEIQAIENLTKGAIGFNLA 411 Query: 402 RGDTITITSMDF-----LEN--QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTF 454 RGD + + +++F +EN Q F S V+ F+ + FA ++ L ++V F Sbjct: 412 RGDAVEVNNLEFHRTAKVENKVQTFYSRFVE-PFIPPVKYVFAAIL--LFIFYKKVIVPF 468 >gi|237666941|ref|ZP_04526926.1| flagellar M-ring protein FliF [Clostridium butyricum E4 str. BoNT E BL5262] gi|237658140|gb|EEP55695.1| flagellar M-ring protein FliF [Clostridium butyricum E4 str. BoNT E BL5262] Length = 520 Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 117/421 (27%), Positives = 210/421 (49%), Gaps = 42/421 (9%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 +L + FKS + +I ++AS+ V I + ++A F+ S Y L+ L+ +D + Sbjct: 10 ELFEKFKSQNK--KIKIAVIASIAAVLIAI-VSAVFYSTSNKYAVLFSNLDTTDAKTVVD 66 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L+ ++ +I + ++I VP + V K ++ LA L S S+ GYEL D+ +SFG+T Sbjct: 67 RLTTEKVESKIDSSTNTIWVPKNQVDKLKLELAP-DLKSGST--GYELMDEQSSFGMTDE 123 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 ++ + R LEGEI + I+S+ I A+V+I D F K A +A+V I+ + Sbjct: 124 EFKLKKKRMLEGEIEKVIKSLEPIENAKVNITEADNSVFVKDKAVGSAAVTIKLKEGATL 183 Query: 186 --KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQH---- 239 +AI +V+ ++ N+ +VTV+D LLT ++ G++ S + QH Sbjct: 184 TDDQVKAIVAVVSTSIENVPKENVTVIDQNSNLLT-RDLNEEANGQASSETISKQHRAEE 242 Query: 240 EIEMNINKALAAFL----GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 E E + K++ + L G N + V A L+ D++Q E DP+ + +S++ Sbjct: 243 EYEDRLQKSIVSLLEPIVGKGNVTAVVKANLDFDSKQQTETTIDPN-----KVIVSQETL 297 Query: 296 RSETSQPESAVT---VEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 + + + V+ V+ NM + ++ S N+ K+E+++NY+ T Sbjct: 298 KEINNNGDGTVSQSPVDNNMSN----EIVNNNSSSNSSKEEQKTNYDSGKSESKTIQAQG 353 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 K++RL+ V +NK LT+ + + G V+ A GI++ RGD IT++ M Sbjct: 354 KVDRLTATVYLNK-TLTQEERQEFEDG------------VANAIGIDATRGDQITVSGMT 400 Query: 413 F 413 F Sbjct: 401 F 401 >gi|254299704|ref|ZP_04967153.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 406e] gi|157809299|gb|EDO86469.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 406e] Length = 532 Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 104/380 (27%), Positives = 191/380 (50%), Gaps = 34/380 (8%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 +Y L+ E ++ + L I +RI + + V S V +AR+ LAA+G+ ++ Sbjct: 35 NYKPLFGAREPVQLDDVVSTLDAQRIPYRIHPDTGQVLVARSDVARARMTLAARGV-TAK 93 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + G E D+ + G + F+Q++ R LE E+A++I ++ + ARVH+ + SF Sbjct: 94 AAPGLEQIDQDDPLGTSQFVQDVRFRRGLESELAQSIATLEPVERARVHLSIAKSSSFVM 153 Query: 167 IGARPTASVMIRAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EM 222 + +A+ ++ + P + E A+ +LVA +VPNL V+V+D G L+A ++ Sbjct: 154 MDGDKSAASVVLTLKPGRRLAKEQIAAVINLVAGSVPNLAPAKVSVVDQHGAFLSARVDL 213 Query: 223 ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPD 281 + ++ G I + ++ N+ LA LG+ NFR +V A +N D ++ RE Sbjct: 214 DGDLTGTD-EIAARFREDVTRNVEDLLAPSLGLGNFRVSVTALVNNDRVEETRE------ 266 Query: 282 SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEE------Q 335 + + ++ +A R+E ++ A+ V ++ S+R V +P S D + Q Sbjct: 267 -QFGEAPKVMNEATRNEQNRDRVALGVPGSL---SNRPVDVPASEPQADGGTQRAATTRQ 322 Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS--YLAEINKIVS 393 Y+ N I +L++LS+AVV+N S +GK S L I++I+ Sbjct: 323 FAYDRNITQI--KRGRGQLKKLSVAVVLNN-------AVSPAKGKPWSPEQLRRIDEILR 373 Query: 394 AATGINSRRGDTITITSMDF 413 + GI+ +RGD + ++S+DF Sbjct: 374 SGLGIDKQRGDQLIVSSLDF 393 >gi|288550127|ref|ZP_05969368.2| flagellar M-ring protein FliF [Enterobacter cancerogenus ATCC 35316] gi|288316307|gb|EFC55245.1| flagellar M-ring protein FliF [Enterobacter cancerogenus ATCC 35316] Length = 533 Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 116/424 (27%), Positives = 195/424 (45%), Gaps = 60/424 (14%) Query: 26 ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISV 85 V+LV ++F + ++ Y LY E V ++ L +I +RI+ + I V Sbjct: 4 GGVLLVAAIVF---SLWRSNQGYVALYGSDEKLPVAQVVEVLGAESIAYRINPDNGQILV 60 Query: 86 PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145 P + +AR+ LAA+G+ ++ GYEL DK G + F+Q + R+LEGE+AR+I + Sbjct: 61 PEDKLPRARMALAAKGI-TAVMPDGYELMDKDEMLGSSQFVQNVRYKRSLEGELARSIMA 119 Query: 146 ISGIVAARVHIVMPDMGSFRKIGARP--TASVM--IRAINPSVYKSAEAIRHLVAAAVPN 201 + + ARVH+ + + SF + +P +ASVM +R + AI LVA +VP Sbjct: 120 LDPVENARVHLGLSESSSF-VMTNKPQSSASVMLQLRYGKHLDEQQVAAIVQLVAGSVPG 178 Query: 202 LDMGDVTVLDSTGKLLTANEMERNILGKSL----SIVQAIQHEIEMNINKALAAFLGVDN 257 + G V V+D G LL+ N + S+ +++ I++E NI L+ G +N Sbjct: 179 MQPGSVRVVDQAGNLLSENGQQGGTSMASIRQGRDVIERIKNETTNNIAALLSPLFGNEN 238 Query: 258 FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNM---PH 314 FR +V ++M + + E RL K+ Q S+ + T E M Sbjct: 239 FRISVTPTVDMSSVE------------ETQERLGKEPQVSDENISHENTTNELAMGIPGS 286 Query: 315 VSDRKVP-----------------------LPRSLENTDKKEEQSNYEINTKSIATTHDN 351 +S+R V P SL + + +EQ Y + H Sbjct: 287 LSNRPVNQPAPATPPMAANAQTAQTETQNRTPSSL--SSRSQEQRKYAFDRDIRHIRHPG 344 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 YKLE+L +AV +N+ + + +Q L + ++V A GI RGD++T+ + Sbjct: 345 YKLEKLRVAVALNQA-AKPLASMTPEQ------LTALTRLVEDAAGIEKDRGDSLTLDRL 397 Query: 412 DFLE 415 F++ Sbjct: 398 AFID 401 >gi|315636314|ref|ZP_07891564.1| flagellar M-ring protein FliF [Arcobacter butzleri JV22] gi|315479403|gb|EFU70086.1| flagellar M-ring protein FliF [Arcobacter butzleri JV22] Length = 574 Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 117/470 (24%), Positives = 232/470 (49%), Gaps = 51/470 (10%) Query: 4 LDQLLQFFKSGTSLGRTRILILAS------VILVPIMLFMAARFFVNSPHYDNLYVKLEV 57 +DQLL+F +L +++ +IL S +I+V +++ + + +Y + L Sbjct: 1 MDQLLKFI---NNLNKSQRIILVSGFALLFIIVVGFLIYSSIKAEDKKLNY-TIASNLTQ 56 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSS--MVGKARIHLAAQGLPSSSSNSGYELFD 115 +DV R S L + I F +S +G+++++ +S + A+I L +++ + G+E+F+ Sbjct: 57 ADVMRASEELEASGIQFVVSGSGNNLTLKTSQEFINIAKIKLVTSE-AATNKHVGWEIFE 115 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 K +S G T+F ++ +RALEGE++R+++S+SG++ A V I +P F + A TAS Sbjct: 116 K-SSLGTTNFENKVKYLRALEGELSRSLESLSGVLKANVKIAIPKETIFTEKRADTTASA 174 Query: 176 MIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL- 231 +I ++ ++ K + I++ +A+AVP+L ++ ++D G LL N E N + + Sbjct: 175 VI-SLKQGIHLTKKQIDGIKNFIASAVPDLKQENIQLIDQDGNLLEQNIDEENTIKSAAQ 233 Query: 232 -SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290 I+ + E I L + + V L+ + + E +Y P+ + RS ++ Sbjct: 234 NKYKDKIEKDYEAKIISLLEPVVETGRVVAKVNVALDFVKKDVEEEIYSPEGSI-RSQQV 292 Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSL-------ENTDKKEEQSNYEINTK 343 ++ ++ P + + V D + +P ++ N++ +NYEI+ K Sbjct: 293 IENTNNTQGMLPNNG-----GVAGV-DNNIQVPTTVGDGSKISSNSEGSNTVTNYEISRK 346 Query: 344 SIATTHDNY-KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402 I+ NY ++R++ +V + + VL D+G+ ++A + + A G + R Sbjct: 347 VISQKDGNYTNIKRITASVTFD----SAVLKDHPDKGE---FIASLESLSGDAIGYDRGR 399 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINA--LVFLVGTL 450 GDTIT+ F+ + N V F VIN+ + +VGT+ Sbjct: 400 GDTITVKDFKFVGAKALNENGQLVD-------EFGNVINSGDGISVVGTM 442 >gi|293408353|ref|ZP_06652192.1| flagellar M-ring protein FliF [Escherichia coli B354] gi|291471531|gb|EFF14014.1| flagellar M-ring protein FliF [Escherichia coli B354] Length = 548 Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 109/411 (26%), Positives = 197/411 (47%), Gaps = 43/411 (10%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 L +A+ ++ +L+ R +V+ LY + E V++I L + +RI Sbjct: 33 LAVAATAIIVSVLWTGNRGYVS------LYGRQENLPVSQIVTVLDGEKLSYRIDPQSGQ 86 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP + K R+ LAA+G+ + SGYEL DK G + F+Q + R+LEGE+A++ Sbjct: 87 ILVPEDELSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSSQFVQNVRYKRSLEGELAQS 145 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARP--TASVMIR-----AINPSVYKSAEAIRHLV 195 I S+ + +ARVH+ + + SF + P +ASV++R +N AI HLV Sbjct: 146 IMSLDAVESARVHLALNEESSF-VVSDEPQNSASVVVRLHYGAKLN---MDQVNAIVHLV 201 Query: 196 AAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINKALAA 251 + ++P L V+V+D G LLT A E K I++ IQ + ++ L + Sbjct: 202 SGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRASVANVLDS 261 Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQ 310 +G N+R +V+ +L++ T + Y K+ R L D + P S Sbjct: 262 LVGSGNYRVSVMPDLDLSTIDETQEHYGDAPKINREENVLDSDTNQVAMGVPGSL----S 317 Query: 311 NMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 N P V+ ++ P +L + + +Y+ + + I H + ++RL++AVV+ Sbjct: 318 NRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHI--QHPGFAVKRLNVAVVL 375 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 N+ A + ++ +++ A GI+ +RGD +T++ ++F+ Sbjct: 376 NQ-------NAPALKNWKPEQTTQLTALLNNAAGIDVQRGDNLTLSLLNFV 419 >gi|188492056|ref|ZP_02999326.1| flagellar M-ring protein FliF [Escherichia coli 53638] gi|188487255|gb|EDU62358.1| flagellar M-ring protein FliF [Escherichia coli 53638] Length = 548 Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 111/415 (26%), Positives = 199/415 (47%), Gaps = 51/415 (12%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 L +A+ ++ +L+ + R +V+ Y + E V++I L + +RI Sbjct: 33 LAVAATAIIVSVLWTSNRGYVS------FYGRQENLPVSQIVSVLDGEKLTYRIDPQSGQ 86 Query: 83 ISVPSSMVGKARIHLAAQG----LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 I VP + K R+ LAA+G LPS GYEL DK G + F+Q + R+LEGE Sbjct: 87 ILVPEDELSKTRMTLAAKGVQAILPS-----GYELMDKDEVLGSSQFVQNVRYKRSLEGE 141 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARP--TASVMIR-----AINPSVYKSAEAI 191 +A++I S+ + +ARVH+ + + SF + P +ASV++R +N AI Sbjct: 142 LAQSIMSLDAVESARVHLALNEESSF-VVSDVPQNSASVVVRLHYGAKLN---MDQVNAI 197 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINK 247 HLV+ ++P L V+V+D G LLT A E K I++ IQ + ++ Sbjct: 198 VHLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRASVAN 257 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAV 306 L + +G N+R +V+ +L++ T + Y K+ R L D + P S Sbjct: 258 VLDSLVGTGNYRVSVMPDLDLSTIDETQEHYGDAPKINREESVLDSDTNQVAMGVPGSL- 316 Query: 307 TVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 N P V+ ++ P +L + + +Y+ + + I H + ++RL++ Sbjct: 317 ---SNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHI--QHPGFAVKRLNV 371 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 AVV+N+ A + A++ +++ A GI+++RGD +T++ ++F+ Sbjct: 372 AVVLNQ-------DAPALKNWKPEQTAQLTALLNNAAGIDAQRGDNLTLSLLNFV 419 >gi|319787100|ref|YP_004146575.1| flagellar M-ring protein FliF [Pseudoxanthomonas suwonensis 11-1] gi|317465612|gb|ADV27344.1| flagellar M-ring protein FliF [Pseudoxanthomonas suwonensis 11-1] Length = 573 Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 136/532 (25%), Positives = 243/532 (45%), Gaps = 40/532 (7%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 F+ P Y LY L+ + L A I FRI S+ISVP + AR+ LA Sbjct: 53 FWSQKPAYTPLYTGLDPKATAEATDLLRAAQIPFRIDQATSAISVPEENLHDARLKLAGS 112 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GL + S G+EL ++ FG++ F++ ALE E+ RTI ++ + ARVH+ +P Sbjct: 113 GL-TESGRLGFELMERDPGFGVSQFVENARYQHALETELVRTISTLRPVRDARVHLAIPK 171 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 +F + +ASV++ + +V + +AI HLV++++P+L VTV+D G++++ Sbjct: 172 PSAFTRAREAASASVVLELRSGAVLERNQVDAIVHLVSSSIPDLAPERVTVVDQNGRMIS 231 Query: 219 ANEMERNILGKSLSIVQAIQ-HEIEMNINKALAAFLGVDNFRSAVVAELNMD-----TQQ 272 N N LS VQ Q E + N+ + L V AE+ +D T++ Sbjct: 232 RNG---NDSASELSAVQFEQVRRQETSYNQRIRELLEPLTGSGRVNAEVTVDMDFSVTEE 288 Query: 273 IREIVYDPDSKVERSIRLSKDAQRSETSQ---------PESAVTVEQNMPHVSDRKVPLP 323 RE+ ++ + + RS ++S++ E Q P AV +QN Sbjct: 289 AREL-FNAEPQKLRSEQVSENTTAGEGPQGIPGATSNTPPGAV-AQQNADGTPAPGTVAT 346 Query: 324 RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS 383 + + N+E++ T ++ R++ AV+V+ G+ A Q + Sbjct: 347 ATAAGNSSRSATRNFELDRTLQHTRQPAGRIRRVTAAVLVDHVPRAGGDGKVALQPLSEQ 406 Query: 384 YLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI-NA 442 LA + ++V A G + RGD +++ + F+ + ++ + D R A V+ A Sbjct: 407 ELARVQELVRQAVGFDPARGDVVSVVNAPFVREDAPAAEPLKW-WEDPRMRDIARVLAGA 465 Query: 443 LVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND----N 498 LV L LL L +LR++ + AKK G S P ++ V+ L+ +D Sbjct: 466 LVVLA--LLFGVL-RPSLRQIASPAGAKK---SGSGEASDEPATAEVS--LVEDDLDIPA 517 Query: 499 IALDSSNQDIFSHSRNLQ-SRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549 +A D++ + + + NSY + + R + + +R A++++ W Sbjct: 518 LAGDTAQLGLQAPGAPMALPSSNSYEDRLRNAR--EAVRADSKRVAQVVKDW 567 >gi|170737019|ref|YP_001778279.1| flagellar M-ring protein FliF [Burkholderia cenocepacia MC0-3] gi|169819207|gb|ACA93789.1| flagellar M-ring protein FliF [Burkholderia cenocepacia MC0-3] Length = 548 Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 104/380 (27%), Positives = 185/380 (48%), Gaps = 35/380 (9%) Query: 48 YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 Y L+ E + AL I +RI + + VP +G AR+ LAA+G+ Sbjct: 59 YKPLFGSQEAVVAADMMAALDAEGIPYRIHPDSGQVLVPEQKLGAARMMLAAKGV-VGKL 117 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RK 166 G E DK + G++ F+Q++ R LEGE+ ++I ++ + +ARVH+ + SF Sbjct: 118 PEGLEQVDKSDPLGVSQFVQDVRFRRGLEGELTQSIMALEPVSSARVHLSIAKSASFILA 177 Query: 167 IGARPTASVMIRAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EM 222 G + +ASV++ + P+ + E AI LVA +V NLD VTV+D +G L+A ++ Sbjct: 178 DGDKSSASVVL-TLKPNRKLNKEQIAAIVALVAGSVANLDPARVTVIDQSGNHLSAQIDL 236 Query: 223 ERNILGKSL---SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQIREIVY 278 +LG S + ++ ++ NI + L LG NFR++V EL+ D ++ RE Sbjct: 237 ---VLGNSTLDSELGAQMREQVLRNIRELLTPVLGDGNFRASVAVELDHDRVEETREQYG 293 Query: 279 DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVP-----LPRSLENTDKKE 333 + + +IR KD ++ P S +S+R P +P + ++ K Sbjct: 294 EAPKVTQEAIRDEKDIGQAALGVPGS----------LSNRPAPPSTASMPEA-PHSAKNA 342 Query: 334 EQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVS 393 + Y + + +++RL++AVV+N + + LA+++ I+ Sbjct: 343 QTRQYAYDRNVVQIKRSPVRVKRLNVAVVLNN-----AAAPGGGKAWAPAQLAQVDTILR 397 Query: 394 AATGINSRRGDTITITSMDF 413 GI++ R D +T++S+DF Sbjct: 398 DGLGIDADRDDALTVSSLDF 417 >gi|83646781|ref|YP_435216.1| flagellar M-ring protein FliF [Hahella chejuensis KCTC 2396] gi|83634824|gb|ABC30791.1| flagellar M-ring protein FliF [Hahella chejuensis KCTC 2396] Length = 462 Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 116/416 (27%), Positives = 206/416 (49%), Gaps = 60/416 (14%) Query: 11 FKSGTSLGRTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 F S S GR +LA++I+V + L+M + S +Y LY L+ +++ L+ Sbjct: 4 FWSEWSGGRRVTFVLAALIVVGAGVALYM----MLTSHNYQVLYKDLDTEQAAKLTEKLN 59 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 E I +++ GS + V + A++ LA+ G + + G+ELFD+ + +G+T F Q+ Sbjct: 60 ELKIPYQLGAQGSQVLVSQDDLYNAKLKLASSGY-ALNGGVGFELFDEAD-YGMTEFAQK 117 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA 188 I RAL+GE+ARTI + I ARVH+V+P+ F+K +P ASV I + Y S Sbjct: 118 INYQRALQGELARTIMAFDEIKFARVHLVLPESSLFKKDNKQPKASVTI-VMEDGKYLSL 176 Query: 189 E---AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE------MERNILGKSLSIVQAIQH 239 + I++LVAA+V L VT+L+ G LT E + + GKS S+ +Q Sbjct: 177 DQINGIQNLVAASVEGLKPETVTLLNHKGVALTQVETGDQATVSAQLKGKS-SMEAFLQQ 235 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMD---TQQIREIVYDPDSKVERSIRLSKDAQR 296 +I + +N+ D +AV ++ ++ +++RE + P ++ + A R Sbjct: 236 KIVVILNQIF------DEGTTAVRVDVALNHKRVERVRETLV-PFGDTDKGAVIKSSANR 288 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD-NYKLE 355 + +P RK P S+ ++D KEE+ Y K + T D ++E Sbjct: 289 ------------QYELPDQDGRKK--PSSVISSDVKEEEYAY---GKQVETLSDAGGEVE 331 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 R++++VV+ S +Q ++ I ++++A G++ RGD + + +M Sbjct: 332 RITVSVVIPA-------NASGEQIEV------IKSLIASAIGLDFERGDLVNVAAM 374 >gi|50120659|ref|YP_049826.1| flagellar MS-ring protein [Pectobacterium atrosepticum SCRI1043] gi|49611185|emb|CAG74631.1| flagellar M-ring protein [Pectobacterium atrosepticum SCRI1043] Length = 574 Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 76/264 (28%), Positives = 140/264 (53%), Gaps = 11/264 (4%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y LY + D I L++ NI +R +++G +I +P++ V + R+ LA Sbjct: 46 LWAKGPDYRVLYSNINDRDGGAIVSELTKLNIPYRFAESGGAIMIPAANVYETRLRLAQL 105 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F ++I RALEGE++RTI+++ + ARVH+ +P Sbjct: 106 GLPKGGA-VGFELLDQ-EKFGISQFSEQINYQRALEGELSRTIETLGPVQNARVHLAIPK 163 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + P++SV + RA++ S I ++V+++V L +VTV+D TG+ Sbjct: 164 PSLFVREQKSPSSSVTLTLQPGRALDEGQINS---IVYMVSSSVAGLPPDNVTVVDQTGR 220 Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT A R++ L ++ + I +A +G+ N + V A+++ ++ Sbjct: 221 LLTQAGGSGRDLNAAQLKYSNEVEAMYQRRIESIIAPMVGMGNVHAQVTAQIDFSAREQT 280 Query: 275 EIVYDPDSKVERSIRLSKDAQRSE 298 + Y P+ +++ S+ +SE Sbjct: 281 DEQYQPNQPPDKAAVRSQQTSQSE 304 >gi|315180474|gb|ADT87388.1| flagellar M-ring protein [Vibrio furnissii NCTC 11218] Length = 568 Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 111/402 (27%), Positives = 191/402 (47%), Gaps = 28/402 (6%) Query: 22 ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81 I+ + S+I I++ M + +S Y LY D +++ L ++ + + ++ + Sbjct: 38 IITIFSMISAAIIVIM---LWASSEDYRPLYSNSSNYDSSQVLQLLDQSGLKYELNKDSG 94 Query: 82 SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 I VP+ V R+ LAA+GL SG++ + + G + FM+ ALEGE+AR Sbjct: 95 QIMVPAKDVATTRMMLAAKGL-KQQLPSGFDALESKGALGESQFMESARYRHALEGELAR 153 Query: 142 TIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAA 198 +I ++ I ARVH+ +P F RK + ASVM++ I+ KSA+ +I +LV+ A Sbjct: 154 SIVTMESIALARVHLAIPKTSLFKRKDQEQAQASVMVQLIDGMDLKSAQVTSIVNLVSGA 213 Query: 199 VPNLDMGDVTVLDSTGKLLTANEMERNIL---GKSLSIVQAIQHEIEMNINKALAAFLGV 255 + L +V V+D G+LL+ + +I + + ++ + + L LG Sbjct: 214 IIGLKPENVRVIDQYGRLLSKDGSMGDISHSGDRQNDFRRTLETRLVSQASDMLTPILGA 273 Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV 315 NFR V A+++ +Q E Y + V RS + D + S N P V Sbjct: 274 ANFRVQVAAKVDFSKRQETEESY--GAPVMRSETIFND--ENSGSMALGIPGALSNTPPV 329 Query: 316 SD---RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372 +D P R++ N K+E Y + + + H LE+L+I+V+VN+ T Sbjct: 330 TDGDTNTTPESRNVRNEAKRE----YAVGGRVVHVQHQQGVLEKLTISVIVNEHNAT--- 382 Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 +G D LA I ++ A G ++ RGD I ++S F+ Sbjct: 383 ----SEGWSDESLARITNVIQNAVGYDAVRGDQIYVSSFPFV 420 >gi|260768771|ref|ZP_05877705.1| flagellar M-ring protein FliF [Vibrio furnissii CIP 102972] gi|260616801|gb|EEX41986.1| flagellar M-ring protein FliF [Vibrio furnissii CIP 102972] Length = 568 Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 111/402 (27%), Positives = 191/402 (47%), Gaps = 28/402 (6%) Query: 22 ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81 I+ + S+I I++ M + +S Y LY D +++ L ++ + + ++ + Sbjct: 38 IITIFSMISAAIIVIM---LWASSEDYRPLYSNSSNYDSSQVLQLLDQSGLKYELNKDSG 94 Query: 82 SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 I VP+ V R+ LAA+GL SG++ + + G + FM+ ALEGE+AR Sbjct: 95 QIMVPAKDVATTRMMLAAKGL-KQQLPSGFDALESKGALGESQFMESARYRHALEGELAR 153 Query: 142 TIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAA 198 +I ++ I ARVH+ +P F RK + ASVM++ I+ KSA+ +I +LV+ A Sbjct: 154 SIVTMESIALARVHLAIPKTSLFKRKDQEQAQASVMVQLIDGMDLKSAQVTSIVNLVSGA 213 Query: 199 VPNLDMGDVTVLDSTGKLLTANEMERNIL---GKSLSIVQAIQHEIEMNINKALAAFLGV 255 + L +V V+D G+LL+ + +I + + ++ + + L LG Sbjct: 214 IIGLKPENVRVIDQYGRLLSKDGSMGDISHSGDRQNDFRRTLETRLVSQASDMLTPILGA 273 Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV 315 NFR V A+++ +Q E Y + V RS + D + S N P V Sbjct: 274 ANFRVQVAAKVDFSKRQETEESY--GAPVMRSETIFND--ENSGSMALGIPGALSNTPPV 329 Query: 316 SD---RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372 +D P R++ N K+E Y + + + H LE+L+I+V+VN+ T Sbjct: 330 TDGDTNATPESRNVRNEAKRE----YAVGGRVVHVQHQQGVLEKLTISVIVNEHSAT--- 382 Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 +G D LA I ++ A G ++ RGD I ++S F+ Sbjct: 383 ----SEGWSDESLARITNVIQNAVGYDAVRGDQIYVSSFPFV 420 >gi|284041509|ref|YP_003391849.1| flagellar M-ring protein FliF [Conexibacter woesei DSM 14684] gi|283945730|gb|ADB48474.1| flagellar M-ring protein FliF [Conexibacter woesei DSM 14684] Length = 505 Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 104/401 (25%), Positives = 176/401 (43%), Gaps = 24/401 (5%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 R +I++ + + ++LF + +P Y L ++ D ++ AL E I + + + Sbjct: 13 RGKIVLAGGALAIVVVLFFLFQI-ATAPSYTTLLTGMDPKDTGEVTAALDERGIAYELQN 71 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 NG++++V +ARI LA GLP ++N GY++ D G ++F Q + RALEGE Sbjct: 72 NGTALAVQKGQTAQARIALAGAGLP-GNTNDGYKILDD-QKMGTSNFQQNVNYQRALEGE 129 Query: 139 IARTIQSISGIVAARVHIVMPDMGS--FRKIGARPTASVMIRAINPSVYKSAEAIRHLVA 196 I TI+ + G+ +A+V +V+PD + F + TA+V++ + I LV Sbjct: 130 IGTTIEEVDGVSSAQVQLVLPDREAQLFAENVNPATAAVLLSGASTLDEGQVRGIAQLVT 189 Query: 197 AAVPNLDMGDVTVLDSTGKLL--TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLG 254 +VP L VT+ DS+G +L TA + L + + NI LA +G Sbjct: 190 NSVPGLKSEKVTITDSSGTMLWPTATSGSSSGLLAKQAAEARYNQQTATNITAMLARTVG 249 Query: 255 VDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPH 314 D + V A+L+ + +VY D S R ++ S + N P Sbjct: 250 PDKVQVQVKADLDANEATQDRLVYGRDG-TPLSNRAERETLVSRGGRAGGPAGTAGNNPP 308 Query: 315 VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR 374 V + + ++ E N +N T + R +AV+V Sbjct: 309 VYAGQA---GGDSDYRRESEDENLAVNKTVTRTRIAPGAVNRQQVAVLV----------- 354 Query: 375 SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 D + L +I V +A GI+ RGD +T+ S+ F E Sbjct: 355 --DDSVPAAMLPQIRDAVMSAAGIDEDRGDVLTLGSIPFAE 393 >gi|253688952|ref|YP_003018142.1| flagellar M-ring protein FliF [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755530|gb|ACT13606.1| flagellar M-ring protein FliF [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 574 Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 76/264 (28%), Positives = 139/264 (52%), Gaps = 11/264 (4%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y LY + D I L++ NI +R +++G +I +P+ V + R+ LA Sbjct: 46 LWAKGPDYRVLYSNINDRDGGAIVGELTKLNIPYRFAESGGAIMIPAEKVYETRLRLAQL 105 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F ++I RALEGE++RTI+++ + ARVH+ +P Sbjct: 106 GLPKGGA-VGFELLDQ-EKFGISQFSEQINYQRALEGELSRTIETLGPVQNARVHLAIPK 163 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + P++SV + RA++ S I ++V+++V L +VTV+D TG+ Sbjct: 164 PSLFVREQKAPSSSVTLTLQPGRALDEGQINS---IVYMVSSSVAGLPPDNVTVVDQTGR 220 Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT A R++ L ++ + I +A +G+ N + V A+++ ++ Sbjct: 221 LLTQAGGSGRDLNAAQLKYSNEVEAMYQRRIESIIAPMVGMGNVHAQVTAQIDFSAREQT 280 Query: 275 EIVYDPDSKVERSIRLSKDAQRSE 298 + Y P+ +++ S+ +SE Sbjct: 281 DEQYQPNQPPDKAAVRSQQTSQSE 304 >gi|298345990|ref|YP_003718677.1| flagellar M-ring protein FliF [Mobiluncus curtisii ATCC 43063] gi|304390252|ref|ZP_07372206.1| flagellar M-ring protein FliF [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298236051|gb|ADI67183.1| flagellar M-ring protein FliF [Mobiluncus curtisii ATCC 43063] gi|304326734|gb|EFL93978.1| flagellar M-ring protein FliF [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 538 Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 116/415 (27%), Positives = 196/415 (47%), Gaps = 55/415 (13%) Query: 16 SLGRTRILIL--ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73 SLG+ + I+ A +IL ++L+ +V SP Y LY L D ++ L I Sbjct: 20 SLGQKTLSIIGVAVLILGGVVLY----SWVASPDYTTLYSGLTDKDQAAVTEQLDSQGIK 75 Query: 74 FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 ++++DNG + VP+ V AR+ LAA LP+ + SGY + D + + F Q++ + R Sbjct: 76 YQVADNGV-VKVPAKDVQSARMSLAAADLPAQPT-SGYAVLDNLG-VAASDFQQQMAKKR 132 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-----SA 188 ALEGE+A+TI ++ I + V + +P F +P A+ I P K + Sbjct: 133 ALEGELAKTIDTMDDIDKSSVALAIPQETVFAD-PKKPVATTASVTITPKNRKDVSNDTV 191 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---------ANEMERNILGKSLSIVQAIQH 239 +AI ++VAA+VPNLD VTV+D+ G L+ A+EME++++ K+L++V+ + Sbjct: 192 QAIINMVAASVPNLDKTGVTVVDTLGNSLSDKVEGGAAAASEMEKSLVDKALAVVEPL-- 249 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY-DPDSKVERSIRLSKDAQRSE 298 +G N R + +L+ D Q VY DP+ V+ + Q S Sbjct: 250 -------------VGAGNARVSAQVDLSQDNQVKTTRVYTDPEGGVKPLSASNAAEQYSG 296 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 V N+ + + + NT + N +N + +T R S Sbjct: 297 GGAVVGGVLGPDNIGNPYELNGNNGGNYTNT---QNVQNNAVNEEVTQSTRAPGAALRKS 353 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 ++VV+N + R D +A++ +V+AATGI++ GD + I+ F Sbjct: 354 VSVVLN-----QETARRLD-------MAQVRDMVAAATGIDAATGDVVNISRSPF 396 >gi|315657517|ref|ZP_07910399.1| flagellar M-ring protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315491989|gb|EFU81598.1| flagellar M-ring protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 538 Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 115/415 (27%), Positives = 196/415 (47%), Gaps = 55/415 (13%) Query: 16 SLGRTRILIL--ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73 SLG+ + I+ A +IL ++L+ +V SP Y LY L D ++ L I Sbjct: 20 SLGQKTLSIIGVAVLILGGVVLY----SWVASPDYTTLYSGLTDKDQAAVTEQLDSQGIK 75 Query: 74 FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 ++++DNG + VP+ V AR+ LAA LP+ + SGY + D + + F Q++ + R Sbjct: 76 YQVADNGV-VKVPAKDVQSARMSLAAADLPAQPT-SGYAVLDNLG-VAASDFQQQMAKKR 132 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-----SA 188 ALEGE+A+TI ++ I + V + +P F +P A+ I P K + Sbjct: 133 ALEGELAKTIDTMDDIDKSSVALAIPQETVFAD-PKKPVATTASVTITPKNRKDVSNDTV 191 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---------ANEMERNILGKSLSIVQAIQH 239 +AI ++VAA+VPNLD VTV+D+ G L+ A+EME++++ K+L++V+ + Sbjct: 192 QAIINMVAASVPNLDKTGVTVVDTLGNSLSDKVEGGTAAASEMEKSLVDKALAVVEPL-- 249 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQ-QIREIVYDPDSKVERSIRLSKDAQRSE 298 +G N R + +L+ D Q + I DP+ V+ + Q S Sbjct: 250 -------------VGAGNARVSAQVDLSQDNQVKTTRIYTDPEGGVKPLSASNAAEQYSG 296 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 V N+ + + + NT + N +N + +T R S Sbjct: 297 GGAVVGGVLGPDNIGNPYELNGNNGGNYTNT---QNVQNNAVNEEVTQSTRAPGAALRKS 353 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 ++VV+N + R D +A++ +V+AATGI++ GD + I+ F Sbjct: 354 VSVVLN-----QETARRLD-------MAQVRDMVAAATGIDAATGDVVNISRSPF 396 >gi|323191522|gb|EFZ76783.1| flagellar M-ring protein FliF [Escherichia coli RN587/1] Length = 548 Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 109/415 (26%), Positives = 198/415 (47%), Gaps = 51/415 (12%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 L +A+ ++ +L+ R +V+ LY + E V++I L + +RI Sbjct: 33 LAVAATAIIVSVLWTGNRGYVS------LYGRQENLPVSQIVTVLDGEKLSYRIDPQSGL 86 Query: 83 ISVPSSMVGKARIHLAAQG----LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 I VP + K R+ LAA+G LPS GYEL DK G + F+Q + R+LEGE Sbjct: 87 ILVPEDALSKTRMTLAAKGVQAILPS-----GYELMDKDEVLGSSQFVQNVRYKRSLEGE 141 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARP--TASVMIR-----AINPSVYKSAEAI 191 +A++I S+ + +ARVH+ + + SF + P +ASV++R +N AI Sbjct: 142 LAQSIMSLDAVESARVHLALNEESSF-VVSDEPQNSASVVVRLHYGAKLN---MDQVTAI 197 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINK 247 HLV+ ++P L V+V+D G LLT A E K I++ IQ + ++ Sbjct: 198 VHLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRASVAN 257 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAV 306 L + +G N+R +V+ +L++ T + Y K+ R L D + P S Sbjct: 258 VLDSLVGTGNYRVSVMPDLDLSTIDETQEHYGDAPKINREESVLDSDTNQVAMGVPGSL- 316 Query: 307 TVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 N P ++ ++ P +L + + +Y+ + + I H + ++RL++ Sbjct: 317 ---SNRPPIAANQMSNGTEENRSPEALSKHSESKRDYSYDRSVQHI--QHPGFAVKRLNV 371 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 AVV+N+ A + ++ +++ A GI+++RGD ++++ ++F+ Sbjct: 372 AVVLNQ-------NAPALKNWKPEQTTQLTALLNNAAGIDAQRGDNLSLSLLNFV 419 >gi|315654577|ref|ZP_07907483.1| flagellar M-ring protein [Mobiluncus curtisii ATCC 51333] gi|315491041|gb|EFU80660.1| flagellar M-ring protein [Mobiluncus curtisii ATCC 51333] Length = 453 Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 115/415 (27%), Positives = 196/415 (47%), Gaps = 55/415 (13%) Query: 16 SLGRTRILIL--ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73 SLG+ + I+ A +IL ++L+ +V SP Y LY L D ++ L I Sbjct: 20 SLGQKTLSIIGVAVLILGGVVLY----SWVASPDYTTLYSGLTDKDQAAVTEQLDSQGIK 75 Query: 74 FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 ++++DNG + VP+ V AR+ LAA LP+ + SGY + D + + F Q++ + R Sbjct: 76 YQVADNGV-VKVPAKDVQSARMSLAAADLPAQPT-SGYAVLDNL-GVAASDFQQQMAKKR 132 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-----SA 188 ALEGE+A+TI ++ I + V + +P F +P A+ I P K + Sbjct: 133 ALEGELAKTIDTMDDIDKSSVALAIPQETVFAD-PKKPVATTASVTITPKNRKDVSNDTV 191 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---------ANEMERNILGKSLSIVQAIQH 239 +AI ++VAA+VPNLD VTV+D+ G L+ A+EME++++ K+L++V+ + Sbjct: 192 QAIINMVAASVPNLDKTGVTVVDTLGNSLSDKVEGGTAAASEMEKSLVDKALAVVEPL-- 249 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQ-QIREIVYDPDSKVERSIRLSKDAQRSE 298 +G N R + +L+ D Q + I DP+ V+ + Q S Sbjct: 250 -------------VGAGNARVSAQVDLSQDNQVKTTRIYTDPEGGVKPLSASNAAEQYSG 296 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 V N+ + + + NT + N +N + +T R S Sbjct: 297 GGAVVGGVLGPDNIGNPYELNGNNGGNYTNT---QNVQNNAVNEEVTQSTRAPGAALRKS 353 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 ++VV+N + R D +A++ +V+AATGI++ GD + I+ F Sbjct: 354 VSVVLN-----QETARRLD-------MAQVRDMVAAATGIDAATGDVVNISRSPF 396 >gi|78047554|ref|YP_363729.1| flagellar MS-ring protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035984|emb|CAJ23675.1| flagellar biosynthesis lipoprotein FliF [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 574 Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 133/569 (23%), Positives = 251/569 (44%), Gaps = 38/569 (6%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 Q+F SL TR L + ++I + + +A F+ P Y +LY L+ + L Sbjct: 19 QWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAADLLR 78 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 A I ++I +ISVP + AR+ LA GL + G+EL +K FG++ F++ Sbjct: 79 TAQIPYKIDQATGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQFVEN 138 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYK 186 ALE E++RTI ++ + ARVH+ +P +F + +ASV+ +R Sbjct: 139 ARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQGLERN 198 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN-- 244 +AI +LVA+++P++ VTV+D +G++L+ + + + Q + E N Sbjct: 199 QVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESSYNQR 258 Query: 245 INKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 I + L G +++ ++ RE+ Y+ + RS ++S D S T P+ Sbjct: 259 IRELLEPMTGPGRVNPETSVDMDFSVVEEAREL-YNGEPAKLRSEQVS-DTSTSATG-PQ 315 Query: 304 SAVTVEQNMP--------------HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 N P + + K NYE++ T Sbjct: 316 GPPGATSNSPGQPPAPAVAGAPGTPAAANGQAAAPATPTESSKSATRNYELDRTLQHTRQ 375 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 +++R+S+AV+++ G+ +Q + L I +V A G ++ RGDT+++ Sbjct: 376 PAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQAVGFDAARGDTVSVM 435 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL--GL--HALRRLHN 465 + F+ + +G + + V N L LVG ++V L G+ LR+L Sbjct: 436 NAPFVREAV--AGEEGPKWWED-----PRVQNGLRLLVGAVVVLALLFGVVRPTLRQLTG 488 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 + K + GK+ P S+ V ++ D+ + +D ++ ++ I + Sbjct: 489 VTAVKDKQ--GKAGKDGTPQSADVR--MVDEDDDLMPRLEEDTAQIGQDKKTPIALPDAY 544 Query: 526 QSDLRLL-HMIEINEERFAKILRKWARSE 553 + +RL ++ + +R A++++ W SE Sbjct: 545 EERMRLAREAVKADSKRVAQVVKGWVASE 573 >gi|213861543|ref|ZP_03386013.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 264 Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 70/200 (35%), Positives = 112/200 (56%), Gaps = 14/200 (7%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 43 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 102 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 103 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 160 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + P+ASV + RA++ A+ HLV++AV L G+VT++D +G Sbjct: 161 PSLFVREQKSPSASVTVTLEPGRALD---EGQISAVVHLVSSAVAGLPPGNVTLVDQSGH 217 Query: 216 LLTANEMERNILGKSLSIVQ 235 LLT + N G+ L+ Q Sbjct: 218 LLT----QSNTSGRDLNDAQ 233 >gi|325920574|ref|ZP_08182496.1| flagellar basal-body M-ring protein/flagellar hook-basal body protein FliF [Xanthomonas gardneri ATCC 19865] gi|325548967|gb|EGD19899.1| flagellar basal-body M-ring protein/flagellar hook-basal body protein FliF [Xanthomonas gardneri ATCC 19865] Length = 576 Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 130/570 (22%), Positives = 250/570 (43%), Gaps = 38/570 (6%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 Q+F SL TR L + ++I + + +A ++ P Y +LY L+ + L Sbjct: 19 QWFDRVRSLQITRKLTMMAMIALAVGAGLAVFYWSQKPGYQSLYTGLDDKGNAEAADLLR 78 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 A I ++I N +ISVP + AR+ LA GL + G+EL +K FG++ F++ Sbjct: 79 TAQIPYKIDQNTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQFVEN 138 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYK 186 ALE E++RTI ++ + ARVH+ +P +F + +ASV+ +R Sbjct: 139 ARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQGLERN 198 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN-- 244 +AI +LVA+++P++ VTV+D +G++L+ + + + Q + E N Sbjct: 199 QVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESSYNQR 258 Query: 245 INKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPDSKVERSIRLSKDAQRSETSQ-P 302 I + L G V +++ ++ RE+ Y+ + RS +++ + + Q P Sbjct: 259 IRELLEPMTGAGRVNPEVSVDMDFSVVEEAREL-YNGEPAKLRSEQINDTSTSATGPQGP 317 Query: 303 ESAVT--------------VEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 A + + + K NYE++ T Sbjct: 318 PGATSNSPGQPPAPAANATAGAPGAPAAANGQAAAPAAPTESSKSATRNYELDRTLQHTR 377 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 +++R+S+AV+++ G+ +Q + L I +V A G ++ RGDT+++ Sbjct: 378 QPAGRIKRVSVAVLLDNVPRPGAKGKIVEQPLTAAELTRIEGLVKQAVGFDAARGDTVSV 437 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL--GL--HALRRLH 464 + F+ + +G + + V N L LVG ++V L G+ LR+L Sbjct: 438 MNAPFVREAV--AGEEGPKWWE-----DPRVQNGLRLLVGAVVVLALLFGVVRPTLRQLT 490 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 + K + GK P S+ V M +D+ + +D ++ + I + Sbjct: 491 GVTVVKDKQ--GKGGKDGTPQSADVR---MVDDDDLMPRLEEDTAQLGQDKKVPIALPDA 545 Query: 525 KQSDLRLL-HMIEINEERFAKILRKWARSE 553 + +R+ ++ + +R A++++ W SE Sbjct: 546 YEERMRVAREAVKADSKRVAQVVKGWVASE 575 >gi|157373218|ref|YP_001471818.1| flagellar MS-ring protein [Shewanella sediminis HAW-EB3] gi|157315592|gb|ABV34690.1| flagellar M-ring protein FliF [Shewanella sediminis HAW-EB3] Length = 570 Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 110/406 (27%), Positives = 200/406 (49%), Gaps = 38/406 (9%) Query: 22 ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81 + ILASV+ I+L + + S Y LY + E + ++I L I++R+ N Sbjct: 42 LAILASVVACVIVLLL----WTASQGYRPLYGQQEKVETSQIIEVLEAEGINYRLEANSG 97 Query: 82 SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 + V +GKAR+ LAA+G+ + SG E D + G + FM++ +LEGE++R Sbjct: 98 LVLVQEDKLGKARMLLAARGVKAKVP-SGMESLDN-SGIGTSQFMEQAKYRHSLEGELSR 155 Query: 142 TIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAA 198 TI ++ + ARVH+ +P F R+ P+ASVM+ S + EAI +LVA + Sbjct: 156 TIMALKAVRTARVHLAIPKRTLFIRQQPELPSASVMLDLYAGSKIQPGQIEAIANLVAGS 215 Query: 199 VPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQAIQHEIEMNINKA---LAA 251 V + V ++D G L++ N+ + L Q ++ + IN+A LA Sbjct: 216 VTGMTPERVQIVDQEGNHLSSGIAINQDITQARDRQLKYTQELEQSL---INRASSMLAP 272 Query: 252 FLGVDNFRSAVVAELNMD-TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQ 310 LG +NF+ + A++N + ++ RE + DP S V +++ Q + + A+ + Sbjct: 273 VLGKENFQVQIAAQVNFNQVEETRESL-DPQSVV------TQEKQSINDTNSDIAMGIPG 325 Query: 311 NMPHVSDRKVPLPRSLENTDK---KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367 + + + K ++ ENT + ++E YE+ T +LE LS++V++N Sbjct: 326 ALTNQAP-KAQANKTEENTRRNLNQQESRQYEVGRSVRHTRFQQMQLENLSVSVLLNN-- 382 Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 + + G ++ ++++ +V + G + +RGD +I S DF Sbjct: 383 -----QAAGENGWNEAQVSQLGTMVKDSIGYSMQRGDQFSINSFDF 423 >gi|21242698|ref|NP_642280.1| flagellar MS-ring protein [Xanthomonas axonopodis pv. citri str. 306] gi|21108171|gb|AAM36816.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306] Length = 574 Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 136/574 (23%), Positives = 249/574 (43%), Gaps = 48/574 (8%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 Q+F SL TR L + ++I + + +A F+ P Y +LY L+ + L Sbjct: 19 QWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAADLLR 78 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 A I ++I +ISVP + AR+ LA GL + G+EL +K FG++ F++ Sbjct: 79 TAQIPYKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQFVEN 138 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYK 186 ALE E++RTI ++ + ARVH+ +P +F + +ASV+ +R Sbjct: 139 ARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQGLERN 198 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN-- 244 +AI +LVA+++P++ VTV+D +G++L+ + + + Q + E N Sbjct: 199 QVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESSYNQR 258 Query: 245 INKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 I + L G +++ ++ RE+ Y+ + RS ++S D S T P+ Sbjct: 259 IRELLEPMTGPGRVNPETSVDMDFSVVEEAREL-YNGEPAKLRSEQVS-DTSTSATG-PQ 315 Query: 304 SAVTVEQNMP--------------HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 N P + + K NYE++ T Sbjct: 316 GPPGATSNSPGQPPAPAVAGAPGTPAAANGQAAAPATPTESSKSATRNYELDRTLQHTRQ 375 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 +++R+S+AV+++ G+ +Q + L I +V A G ++ RGDT+++ Sbjct: 376 PAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQAVGFDAARGDTVSVM 435 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL--GL--HALRRLHN 465 + F+ + +G + + V N L LVG ++V L G+ LR+L Sbjct: 436 NAPFVREAV--AGEEGPKWWED-----PRVQNGLRLLVGAVVVLALLFGVVRPTLRQLTG 488 Query: 466 IDDAKKGEVGGKSILSPPPISSAV-----TTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520 + K + GK+ P S+ V LMP L+ I + + + Sbjct: 489 VTAVKDKQ--GKAGKDGTPQSADVRMVDDDDDLMPR----LEEDTAQIGQDKKTPIALPD 542 Query: 521 SYVSKQSDLRLL-HMIEINEERFAKILRKWARSE 553 +Y + +RL ++ + +R A++++ W SE Sbjct: 543 AYEER---MRLAREAVKADSKRVAQVVKGWVASE 573 >gi|306813320|ref|ZP_07447513.1| flagellar MS-ring protein [Escherichia coli NC101] gi|305854083|gb|EFM54522.1| flagellar MS-ring protein [Escherichia coli NC101] Length = 548 Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 109/415 (26%), Positives = 197/415 (47%), Gaps = 51/415 (12%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 L +A+ ++ +L+ R +V+ LY + E V++I L + + I Sbjct: 33 LAVAATAIIVSVLWTGNRGYVS------LYGRQENLPVSQIVTVLDGEKLTYCIDPQSGQ 86 Query: 83 ISVPSSMVGKARIHLAAQG----LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 I VP + K R+ LAA+G LPS GYEL DK G + F+Q + R+LEGE Sbjct: 87 ILVPEDELSKTRMTLAAKGVQAILPS-----GYELMDKDEVLGSSQFVQNVRYKRSLEGE 141 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARP--TASVMIR-----AINPSVYKSAEAI 191 +A++I S+ + +ARVH+ + + SF + P +ASV++R +N AI Sbjct: 142 LAQSIMSLDAVESARVHLALNEESSF-VVSDEPQNSASVVVRLHYGAKLN---MDQVNAI 197 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINK 247 HLV+ ++P L V+V+D G LLT A E K I++ IQ + ++ Sbjct: 198 VHLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRASVAN 257 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAV 306 L + +G N+R +V+ +L++ T + Y K+ R L D + P S Sbjct: 258 VLDSLVGTGNYRVSVMPDLDLSTIDETQEHYGDAPKINREESVLDSDTNQVAMGVPGSL- 316 Query: 307 TVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 N P ++ ++ P +L + + +Y+ + + I H + ++RL++ Sbjct: 317 ---SNRPPIAANQMSNGTEENRSPEALSKHSESKRDYSYDRSVQHI--QHPGFAVKRLNV 371 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 AVV+N+ A + ++ +++ A GI+++RGD +T++ ++F+ Sbjct: 372 AVVLNQ-------NAPALKNWKPEQTTQLTALLNNAAGIDAQRGDNLTLSLLNFV 419 >gi|194365657|ref|YP_002028267.1| flagellar MS-ring protein [Stenotrophomonas maltophilia R551-3] gi|194348461|gb|ACF51584.1| flagellar M-ring protein FliF [Stenotrophomonas maltophilia R551-3] Length = 548 Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 112/449 (24%), Positives = 205/449 (45%), Gaps = 12/449 (2%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 Q+F SL TR L L ++I V + + F+ P LY L+ + L Sbjct: 17 QWFDRLQSLQITRRLGLMAMIAVAVAAGLFVFFWSQKPGMVPLYTGLDQKATAEATDLLR 76 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 A I F++ I+VP + AR+ LA GL + S G+EL ++ FG++ F++ Sbjct: 77 AAQIPFQLDPATGGITVPEKNLHDARLKLAGSGL-TDSGKLGFELMERDPGFGVSQFVES 135 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYK 186 ALE E++RTI ++ + +RVH+ +P +F + +ASV +R Sbjct: 136 ARYQHALETELSRTINTLRPVRDSRVHLAIPKPSAFTRQRDVASASVTLELRGGQQLERS 195 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN-- 244 +AI H+VAA++P+L VTV+D +G++L+ ++ + Q + E N Sbjct: 196 QVDAIVHMVAASIPDLAPERVTVVDQSGRMLSVSDPNSEAAVNAAQFEQVRRQETSFNQR 255 Query: 245 INKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 I + L G V +++ T++ RE+ Y+ + + RS ++S+++ + T P+ Sbjct: 256 IRELLEPMTGPGRVNPEVSVDMDFSVTEEAREL-YNGEPQKLRSEQMSENS--TTTPGPQ 312 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 N P ++ + K + NYE++ T +++R+S+AV+V Sbjct: 313 GVPGATSNSPPGQAAAPATAQTPTESSKNATR-NYELDRTLQHTRQPAGRIKRVSVAVLV 371 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 + G+ A Q + L + +V A G N+ RGDT+++ + F+ + G Sbjct: 372 DNVPRAGANGKVAPQPLSAAELTRVEALVKQAVGFNAERGDTVSVMNAPFVRDTTPVEGP 431 Query: 424 V--QVSFMDILSRHFATVINALVFLVGTL 450 ++ ++ R + L L G L Sbjct: 432 AWWELPWVHDAGRMLLGAVVVLALLFGVL 460 >gi|313650158|gb|EFS14571.1| flagellar M-ring domain protein [Shigella flexneri 2a str. 2457T] gi|332757276|gb|EGJ87613.1| flagellar M-ring protein domain protein [Shigella flexneri 2747-71] gi|332757502|gb|EGJ87837.1| flagellar M-ring protein domain protein [Shigella flexneri K-671] gi|332766674|gb|EGJ96878.1| hypothetical protein SF293071_2322 [Shigella flexneri 2930-71] gi|333017624|gb|EGK36936.1| flagellar M-ring protein domain protein [Shigella flexneri K-304] Length = 259 Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 75/231 (32%), Positives = 121/231 (52%), Gaps = 7/231 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92 + + +A + +P Y L+ L D I L++ NI +R S+ +I VP+ V + Sbjct: 33 VAVMVALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGAIEVPADKVHE 92 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 R LA QGLP + G+EL D+ FG++ F +++ RALEGE++RTI++I + A Sbjct: 93 LR--LAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRTIETIGPVKGA 148 Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVL 210 RVH+ MP F + P+ASV + + + AI HLV++AV L G+VT++ Sbjct: 149 RVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAGLPPGNVTLV 208 Query: 211 DSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRS 260 D G LLT +N R++ L ++ I+ I L+ +G N + Sbjct: 209 DQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQQRIEAILSPIVGNGNIHA 259 >gi|168187560|ref|ZP_02622195.1| flagellar M-ring protein FliF [Clostridium botulinum C str. Eklund] gi|169294591|gb|EDS76724.1| flagellar M-ring protein FliF [Clostridium botulinum C str. Eklund] Length = 522 Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 126/427 (29%), Positives = 207/427 (48%), Gaps = 51/427 (11%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPI---MLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L+ FK G + G+ I SV++V I ++++ F+N+ Y LY ++ +D + Sbjct: 11 LIDKFK-GLTKGKK---IAFSVLVVGIISGLIYLIV--FLNTTKYAVLYKDMDPNDAQTV 64 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L+E +++++ SSI VP V + R+ LA Q L S S GYE+ + +SFG+T Sbjct: 65 MNKLNEKKVEYKVE--SSSIKVPEDKVSELRLELAPQ-LKSGSK--GYEILENADSFGMT 119 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 +E+ ALEGE+A+ I+S+ + ++V +VMP G+F K ASV I N Sbjct: 120 DKERELNYKIALEGELAKNIKSLPEVKDSKVLLVMPQEGNFFKQAENAQASVRIE-FNEG 178 Query: 184 VYKSAEAIR---HLVAAAVPNLDMGDVTVL---DSTGKLLTANEMERNILGKSLSIVQAI 237 S E I+ LV +V NL +V V+ + K LT ++ + GK L+ V Sbjct: 179 KSISKEQIKAIISLVTGSVKNLKKENVKVIGVVNGQTKDLTE-DLFGDEDGKDLTTVTDK 237 Query: 238 QHEIEMNINKA--------LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 Q++ + N+ K L G + ++AV +L+ D + V+DP++ V RS Sbjct: 238 QNKYKKNLEKEYVKKIMNILTPKYG-EGVKAAVNVDLDFDASEKTSTVWDPNNVV-RSEE 295 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSL-ENTDKKEEQSNYEINTKSIATT 348 KD S+ + SA V+ NM + + + S E T K NYE+ T Sbjct: 296 TEKDTDTSKGGKV-SAGPVDNNMSNTYNNQDGNGSSTHEKTTK-----NYEVGKIEQKTV 349 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 K++++S +V +N L+ V D+ KI+S +V+ A + RGD IT+ Sbjct: 350 GAPGKIKKVSTSVTINDENLSPV-----DKDKINS-------LVAGAISYDENRGDIITV 397 Query: 409 TSMDFLE 415 + F E Sbjct: 398 EGLKFNE 404 >gi|82523970|emb|CAI78781.1| flagellar biosynthesis/type III secretory pathway lipoprotein [uncultured epsilon proteobacterium] Length = 572 Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 120/419 (28%), Positives = 204/419 (48%), Gaps = 63/419 (15%) Query: 31 VPIMLFMAARFFVNSPH--YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSS 88 V ++FM N+ ++ L+ L +D ++ L + I++ I DN + I VP Sbjct: 33 VGFLIFMVVYTSKNTKESKFEVLFDSLSSADAAKVVEQLEKDGIEYEIEDN-NVIRVPRD 91 Query: 89 MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISG 148 +V K RI +AA G+P S G+ELFD FG TSF Q I +RALEGE++RTI +++ Sbjct: 92 VVYKQRISIAALGIPKDS-GVGFELFD-TQEFGATSFDQNIKYLRALEGELSRTINALAP 149 Query: 149 IVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGD 206 I +A V + +P F + PTASVMI + S + I++LVA+AV L + Sbjct: 150 IESASVSLALPKETLFVEKSVSPTASVMITLVEGRNLSSKQVRGIKNLVASAVTKLTPAN 209 Query: 207 VTVLDSTGKLLTANEMERNILGKSLSI----VQAIQHEIEMNINKALAAFLGVDNFRSAV 262 V +++S G+ L +E E +G+ S+ + + + + I + L+ F+G V Sbjct: 210 VMLVNSDGETL-GDEDEMAQMGELSSVQQKYKEKEEKKRQKKIIQVLSPFVG---GTKKV 265 Query: 263 VAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVP- 321 VA++ ++ + SI+ S SET PE+ V EQN + P Sbjct: 266 VAQVTIE--------------FDFSIKNS----TSETFDPENVVRSEQNSEEKREGGAPA 307 Query: 322 ----LPRSLEN-----------TDKKEEQS----NYEINTKSIATTHDNY-KLERLSIAV 361 +P ++ N T +K E+S NYE+ K+++TT + ++ R++ AV Sbjct: 308 EVGGVPGTVSNIGPVQGLKSNQTSEKYEKSTGTTNYEVG-KTVSTTKSQFARINRITAAV 366 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLA-------EINKIVSAATGINSRRGDTITITSMDF 413 +V+ G+ L + YL I+ + ++ GI+ RGD +++ ++ F Sbjct: 367 IVD-GKYKNKLNADGVPTEELEYLPLDETDIQAISSLAGSSIGIDEARGDQLSVKNLQF 424 >gi|170682472|ref|YP_001742357.1| flagellar MS-ring protein [Escherichia coli SMS-3-5] gi|170520190|gb|ACB18368.1| lateral flagellar M-ring protein LfiF [Escherichia coli SMS-3-5] Length = 548 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 109/415 (26%), Positives = 196/415 (47%), Gaps = 51/415 (12%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 L +A+ ++ +L+ R +V+ LY + E V++I L + +RI Sbjct: 33 LAVAATAIIVSVLWTGNRGYVS------LYGRQENLPVSQIVTVLDGEKLSYRIDPQSGQ 86 Query: 83 ISVPSSMVGKARIHLAAQG----LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 I VP + K R+ LAA+G LPS GYEL DK G + F+Q + R+LEGE Sbjct: 87 ILVPEDELSKTRMTLAAKGVQAILPS-----GYELMDKDEVLGSSQFVQNVRYKRSLEGE 141 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARP--TASVMIR-----AINPSVYKSAEAI 191 +A++I S+ + +ARVH+ + + SF + P +ASV++R +N AI Sbjct: 142 LAQSIMSLDAVESARVHLALNEESSF-VVSDEPQNSASVVVRLHYGAKLN---MDQVNAI 197 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINK 247 HLV+ ++P L V+V+D G LLT A E K I++ IQ + ++ Sbjct: 198 VHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRASVAN 257 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAV 306 L + +G N+R +V+ +L++ + Y K+ R L D + P S Sbjct: 258 VLDSLVGSGNYRVSVMPDLDLSNIDETQEHYGDAPKINREENVLDSDTNQVAMGVPGSL- 316 Query: 307 TVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 N P ++ ++ P +L + + +Y+ + + I H + ++RL++ Sbjct: 317 ---SNRPPIAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHI--QHPGFAVKRLNV 371 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 AVV+N+ A + ++ +++ A GI+ +RGD +T++ ++F+ Sbjct: 372 AVVLNQ-------NAPALKNWKPEQTTQLTALLNNAAGIDVQRGDNLTLSLLNFV 419 >gi|332187937|ref|ZP_08389670.1| flagellar M-ring protein FliF [Sphingomonas sp. S17] gi|332012098|gb|EGI54170.1| flagellar M-ring protein FliF [Sphingomonas sp. S17] Length = 580 Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 110/404 (27%), Positives = 190/404 (47%), Gaps = 53/404 (13%) Query: 44 NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP 103 +SP L+ L +D ++ ALS ANI +I+D +++V KAR+ LA QGLP Sbjct: 63 SSPPQKTLFENLSDADKQAVTTALSAANIKSKINDGTGALTVNEEDYSKARMLLAGQGLP 122 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVR-ALEGEIARTIQSISGIVAARVHIVMPDMG 162 + GY + D++ G++ + E R+R A E E+AR+I+ I + ARVH+ MP+ Sbjct: 123 KQAPG-GYAILDQL-PMGVSRAV-EGERLRQARESELARSIEEIDAVAEARVHLAMPEAS 179 Query: 163 SFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + A P+ASV++ RA++ + +S I +LVA++VP + DVTV+D G LL Sbjct: 180 VFVRDKASPSASVVLKLNAGRALSEAQVQS---IINLVASSVPGMKPEDVTVVDQMGGLL 236 Query: 218 TANEMERNILGKS-----LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272 + ++ G S + + ++ + + + L +G NF + V A++N+D Sbjct: 237 S----KKGADGASGDDRRIDFQRRLEEKYRTQLIQLLTPLVGAGNFTAEVQADVNLDETS 292 Query: 273 IREIVYDPDSKVERSIRLSKDAQRSETSQ----------PESAVTVEQ--------NMPH 314 YD D + Q+ T P A T++Q P Sbjct: 293 ATSERYDKDGALRAETGNWTGNQKDPTPPGGIPGALSNTPPPASTLQQPQAANGANGAPP 352 Query: 315 VSDRKVPLPRSLENTDKKEE--QSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372 + V L N +K+ + Q Y++N + T ++RL++AV++ Sbjct: 353 ADGKPVAGGPGL-NPEKQSDAFQRAYDLNKQVSVTRAAPGSIKRLTVAVLL--------- 402 Query: 373 GRSADQGKIDSY-LAEINKIVSAATGINSRRGDTITITSMDFLE 415 R GK + +I+ +V +A G + +R D +T+ S F + Sbjct: 403 -RDPATGKRSQMEITQISDLVKSAVGFDQQRNDNVTVISRKFAD 445 >gi|78045011|ref|YP_359840.1| flagellar MS-ring protein [Carboxydothermus hydrogenoformans Z-2901] gi|77997126|gb|ABB16025.1| flagellar M-ring protein FliF [Carboxydothermus hydrogenoformans Z-2901] Length = 528 Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 116/457 (25%), Positives = 200/457 (43%), Gaps = 53/457 (11%) Query: 28 VILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPS 87 +IL ++ + F+ P Y L L+ + I+ L E I++++ D G++I VP Sbjct: 28 LILTAVLSLLLGYIFLGRPSYTPLATGLDAKEAGAIAEKLKEWKINYKLGDEGTTILVPK 87 Query: 88 SMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSIS 147 S V +ARI LA+ G+ ++S G+ELFD+ G + F ++ RAL+ E+ RTI + Sbjct: 88 SQVYEARIKLASAGVLETNSGIGFELFDQ-TKLGASDFENQVNYQRALQEELRRTIVQLD 146 Query: 148 GIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMG 205 + ARVH+V+P+ F TAS++++ E I +LVA +V L Sbjct: 147 AVEDARVHLVLPEKSVFISEEKPATASILLKLKPLKKLTPQEIKGIIYLVANSVEGLKPE 206 Query: 206 DVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN--------INKALAAFLGVDN 257 +V V+D+ G +L+ ++ L SLS Q E++ IN L LG Sbjct: 207 NVQVVDTYGNVLS----DQVDLSSSLSAQSGRQQEMKKQFETELTNRINNLLTTILGPGK 262 Query: 258 FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV------EQN 311 ++ A+L+ + ++ + P V + ++ P ++ TV QN Sbjct: 263 AVVSINADLDFNQEETTSQIALPGPLVSE-----QGSKEVVYGSPGASGTVGTGPNTNQN 317 Query: 312 MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV 371 P+++ + E K++ NY++ ++RLS A+ ++ G Sbjct: 318 YPYINGST-----NGEVQVKEDFTRNYQVGQTVYKLVKAPGTVKRLSAAIAIDSGV---- 368 Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF------LENQLFNSGTVQ 425 +AD K I IV+AA G + RGD I I ++ F + + Sbjct: 369 --PAADVNK-------IRDIVAAAMGYDQNRGDQIIINTITFDKTLAKQMEEQQAQAQKE 419 Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 L + A ALVFL ++ F G+ R+ Sbjct: 420 QQARQALYKWLAIGAGALVFLS---IIVFFGIRRFRK 453 >gi|188589083|ref|YP_001920202.1| flagellar MS-ring protein [Clostridium botulinum E3 str. Alaska E43] gi|188499364|gb|ACD52500.1| flagellar M-ring protein FliF [Clostridium botulinum E3 str. Alaska E43] Length = 520 Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 117/417 (28%), Positives = 198/417 (47%), Gaps = 36/417 (8%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 L + FKS + + +I I S + V I+ ++ + +S Y L+ L+ D I Sbjct: 11 LWEKFKSQSK--KIKIAIFISCVAV-IIAIISTMIYTSSNKYQVLFSNLDPKDAQTILAK 67 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L+E + +I G +I VP+ V + R+ LA + L S SS GYEL D +SFG+T Sbjct: 68 LNEQKVTTKIQ--GDTILVPNDKVDQLRLELAPE-LKSGSS--GYELMDSGSSFGMTDEE 122 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS--V 184 ++ ++R EGE+ +TI+S S I +ARVHI F K A+V + S Sbjct: 123 FKVKKLRMQEGELEKTIKSFSQIESARVHITPSTDSVFVKESTPGKAAVYLELKTGSEIT 182 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-------EMERNILGKSLSIVQAI 237 ++I LV+ + N+ ++ V+D LLTAN M L K S+ + Sbjct: 183 KDQVKSIVALVSGSTENVPKENIEVIDDKMNLLTANLNDDENEVMSSESLDKQYSLEKNY 242 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + +++ I L +G D ++ V +L+ D++Q + V DP+ KV S + K+ + Sbjct: 243 EGKLQKEIVSLLEPVIGKDKVKATVNVDLDFDSKQQTQTVLDPN-KVVVSQQTIKEVNNT 301 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 S V+ N +S+ + N+ ++E+++NYEI +++R+ Sbjct: 302 GADGNISESPVDNN---ISNTTDDTNNTNSNSSREEQKNNYEIGKTETKVISAPGEVKRM 358 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAE-INKIVSAATGINSRRGDTITITSMDF 413 + +VVV+ G +D+ + I VS A G NS RGD I++ M+F Sbjct: 359 TASVVVD--------------GNLDAATQQAIENAVSNAIGFNSVRGDQISVLGMNF 401 >gi|283834471|ref|ZP_06354212.1| flagellar M-ring protein FliF [Citrobacter youngae ATCC 29220] gi|291070018|gb|EFE08127.1| flagellar M-ring protein FliF [Citrobacter youngae ATCC 29220] Length = 560 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 105/394 (26%), Positives = 189/394 (47%), Gaps = 47/394 (11%) Query: 48 YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 Y +LY E V++I L +++RI I VP + K R+ LAA+G+ + Sbjct: 50 YVSLYGSQENLPVSQIVTVLDGEKLEYRIDPQSGQILVPEEALSKTRMTLAAKGV-QAML 108 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 SGYEL DK G + F+Q I R+LEGE+A++I ++ + +ARVH+ + + SF + Sbjct: 109 PSGYELMDKDEVLGASQFVQNIRYKRSLEGELAQSIMTLDAVESARVHLALNEESSF-VV 167 Query: 168 GARP--TASVMIRAINPSV--YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----A 219 P +ASV++R S AI HLV+ +VP+L V+V+D G LL+ A Sbjct: 168 SDEPQNSASVVVRLHYGSKLDLDQVNAIVHLVSGSVPDLKASLVSVVDQAGNLLSDGIGA 227 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM----------- 268 E K I++ IQ + ++ L + +G N+R +V+ +L++ Sbjct: 228 GEAVSAATRKRDQILKDIQDKTRASLANVLDSLVGTGNYRVSVMPDLDLSNIDETQEHYG 287 Query: 269 DTQQI--REIVYDPDSKVERSIRLSKDAQRSETSQPESAV------TVEQNMPHVSDRKV 320 DT ++ E V D D+ +++ S +++P A T P S + Sbjct: 288 DTPKVNREETVLDSDTN-----QIAMGIPGSLSNRPPLAANQVANGTAAGTAPEESRQPA 342 Query: 321 PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380 L + EN + +Y + H + ++RL++AVV+N+ A + Sbjct: 343 ALSKHSEN------KRDYSWDRSVEHIQHPGFDIKRLNVAVVLNQ-------SAPALKNW 389 Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 ++ +++ A GI+++RGD ++++ ++F+ Sbjct: 390 KPEQTTQLTALLNNAAGIDAKRGDNLSLSLLNFV 423 >gi|88597235|ref|ZP_01100470.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni 84-25] gi|88190296|gb|EAQ94270.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni 84-25] Length = 560 Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 120/434 (27%), Positives = 210/434 (48%), Gaps = 41/434 (9%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +L Q+ Q +++ T + RI+I AS+I+V L A F + + +N Y L V +V+ Sbjct: 6 MLHQIGQLYQNLTR--KQRIVIAASIIVVVGFLVFLALFHGSGSNANNGYAVL-VENVSP 62 Query: 63 ISVA-----LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 S A L + NI +++ ++ + I VP V + R+ +A++GL S G+E FD Sbjct: 63 SSSAAIVAKLEQNNIPYKL-ESENKILVPQDQVYRQRMFIASEGL-IKDSRVGFEAFD-T 119 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM- 176 +FG T+ Q++ RA+EGE+ARTI+++ I +A VHI P F + PTASV+ Sbjct: 120 QAFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASVVV 179 Query: 177 -IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIV 234 +R K + I+++V+AAVP L +V + D +G L E E +++ + Sbjct: 180 NVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIKFK 239 Query: 235 QAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293 + +E I + LA F G+D + +V + + Q+ + +YDP+ V L++ Sbjct: 240 SDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLNE- 298 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEIN--------TKSI 345 +R+ PE Q +P P +E D K + Y+ N +K+I Sbjct: 299 -ERTGRKDPEI-----QGVPGAVSNIGP----VEGLDNKGQIDTYKKNQVTTNNELSKTI 348 Query: 346 ATTHDNY-KLERLSIAVVVNKGRLTEVLGRSADQGK-----IDSYLAEINKIVSAATGIN 399 T + + R S AV ++ G+ +V+ + D LA + IV + Sbjct: 349 TNTKKQFATVLRTSAAVTID-GKYQDVVDENGDVKSEYVPLTKEELASVESIVKNTINFS 407 Query: 400 SRRGDTITITSMDF 413 + RGD++ + ++ F Sbjct: 408 ATRGDSVVVQNLPF 421 >gi|294664059|ref|ZP_06729461.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292606162|gb|EFF49411.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 572 Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 113/466 (24%), Positives = 205/466 (43%), Gaps = 29/466 (6%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 Q+F SL TR L + ++I + + +A F+ P Y +LY L+ + L Sbjct: 19 QWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAADLLR 78 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 A I ++I +ISVP + AR+ LA GL + G+EL +K FG++ F++ Sbjct: 79 TAQIPYKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQFVEN 138 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYK 186 ALE E++RTI ++ + ARVH+ +P +F + +ASV+ +R Sbjct: 139 ARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQGLERN 198 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN-- 244 +AI +LVA+++P++ VTV+D +G++L+ + + + Q + E N Sbjct: 199 QVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESSYNQR 258 Query: 245 INKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 I + L G +++ ++ RE+ Y+ + RS ++S D S T P+ Sbjct: 259 IRELLEPMTGPGRVNPETSVDMDFSVVEEAREL-YNGEPAKLRSEQVS-DTSTSATG-PQ 315 Query: 304 SAVTVEQNMP--------------HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 N P + + K NYE++ T Sbjct: 316 GPPGATSNSPGQPPAPAVAGAPGTPAAANGQAAAPATPTESSKSATRNYELDRTLQHTRQ 375 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 +++R+S+AV+++ G+ +Q + L I +V A G ++ RGDT+++ Sbjct: 376 PAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQAVGFDAARGDTVSVM 435 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455 + F+ + +G + + V N L LVG ++V L Sbjct: 436 NAPFVREAV--AGEEGPKWWED-----PRVQNGLRLLVGAVVVLAL 474 >gi|251779126|ref|ZP_04822046.1| flagellar M-ring protein FliF [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083441|gb|EES49331.1| flagellar M-ring protein FliF [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 520 Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 117/417 (28%), Positives = 198/417 (47%), Gaps = 36/417 (8%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 L + FKS + + +I I S + V I+ ++ + +S Y L+ L+ D I Sbjct: 11 LWEKFKSQSK--KIKIAIFISCVAV-IIAIVSTIIYTSSNKYQVLFSNLDPKDAQTILAK 67 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L+E + +I G +I VP+ V + R+ LA + L S SS GYEL D +SFG+T Sbjct: 68 LNEQKVTTKIQ--GDTILVPNDKVDQLRLELAPE-LKSGSS--GYELMDSGSSFGMTDEE 122 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS--V 184 ++ ++R EGE+ +TI+S S I +ARVHI F K A+V + S Sbjct: 123 FKVKKLRMQEGELEKTIKSFSQIESARVHITPSTDSVFVKESTPGKAAVYLELKTGSEIT 182 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-------EMERNILGKSLSIVQAI 237 ++I LV+ + N+ ++ V+D LLTAN M L K S+ + Sbjct: 183 KDQVKSIVALVSGSTENVPKENIEVIDDKMNLLTANLNDDENEMMSSESLDKQYSLEKNY 242 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + +++ I L +G D ++ V +L+ D++Q + V DP+ KV S + K+ + Sbjct: 243 EGKLQKEIVSLLEPVIGKDKVKATVNVDLDFDSKQQTQTVLDPN-KVVVSQQTIKEVNNT 301 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 S V+ N +S+ + N+ ++E+++NYEI +++R+ Sbjct: 302 GADGNISESPVDNN---ISNTTDDTNNTNSNSSREEQKNNYEIGKTETKVISAPGEVKRM 358 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAE-INKIVSAATGINSRRGDTITITSMDF 413 + +VVV+ G +D+ + I VS A G NS RGD I++ M+F Sbjct: 359 TASVVVD--------------GNLDAATQQAIENAVSNAIGFNSVRGDQISVLGMNF 401 >gi|74317106|ref|YP_314846.1| flagellar biosynthesis/type III secretory pathway lipoprotein FliF [Thiobacillus denitrificans ATCC 25259] gi|74056601|gb|AAZ97041.1| flagellar biosynthesis/type III secretory pathway lipoprotein FliF [Thiobacillus denitrificans ATCC 25259] Length = 381 Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 96/280 (34%), Positives = 141/280 (50%), Gaps = 23/280 (8%) Query: 21 RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80 R L LA +ILVP+ AA + N P Y LY +L + AL + I +R+S Sbjct: 19 RRLTLALLILVPLGALAAAYIWFNPPAYRVLYGQLSDRVGGEVIGALEQLGIPYRLSAGD 78 Query: 81 SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140 I VP + AR LAA GLP S ++ ++ ++ SFGL+S Q+ + RALE E+A Sbjct: 79 GRIEVPVDTLHVARYRLAALGLPRSDADVEADV-ERAPSFGLSSLQQQQRQQRALEHELA 137 Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLVAA 197 R+IQS+ + ARVH+ +P + F + R TA+V++R + P S E I+ LVAA Sbjct: 138 RSIQSLEAVELARVHLALPKVSPFLRDAPRATAAVLVR-LRPRAQLSTEQVTTIQTLVAA 196 Query: 198 AVPNLDMGDVTVLDSTGKLL--TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255 AVP + DV VLD G +L A E+E SL + A++ ++ L +LG Sbjct: 197 AVPRMKRADVQVLDPRGVVLGGAAPEIE-----PSLRV--ALEQDLARRALAVLTPWLGA 249 Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 + V A L T + VER R++ + Q Sbjct: 250 ERVSVQVTATLEDATTR---------ETVERMRRVAGEGQ 280 >gi|86149222|ref|ZP_01067454.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni CF93-6] gi|148926414|ref|ZP_01810097.1| flagellar M-ring protein [Campylobacter jejuni subsp. jejuni CG8486] gi|205356032|ref|ZP_03222800.1| flagellar M ring protein [Campylobacter jejuni subsp. jejuni CG8421] gi|218561977|ref|YP_002343756.1| flagellar MS-ring protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85840580|gb|EAQ57837.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni CF93-6] gi|112359683|emb|CAL34469.1| flagellar M-ring protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|145844577|gb|EDK21683.1| flagellar M-ring protein [Campylobacter jejuni subsp. jejuni CG8486] gi|205346156|gb|EDZ32791.1| flagellar M ring protein [Campylobacter jejuni subsp. jejuni CG8421] gi|284925590|gb|ADC27942.1| flagellar MS-ring protein [Campylobacter jejuni subsp. jejuni IA3902] gi|315928381|gb|EFV07695.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315930535|gb|EFV09578.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni 305] Length = 560 Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 120/434 (27%), Positives = 210/434 (48%), Gaps = 41/434 (9%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +L Q+ Q +++ T + RI+I AS+I+V L A F + + +N Y L V +V+ Sbjct: 6 MLHQIGQLYQNLTR--KQRIVIAASIIVVVGFLVFLALFRGSGSNANNGYAVL-VENVSP 62 Query: 63 ISVA-----LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 S A L + NI +++ ++ + I VP V + R+ +A++GL S G+E FD Sbjct: 63 SSSAAIVAKLEQNNIPYKL-ESENKILVPQDQVYRQRMFIASEGL-IKDSRVGFEAFD-T 119 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM- 176 +FG T+ Q++ RA+EGE+ARTI+++ I +A VHI P F + PTASV+ Sbjct: 120 QAFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASVVV 179 Query: 177 -IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIV 234 +R K + I+++V+AAVP L +V + D +G L E E +++ + Sbjct: 180 NVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIKFK 239 Query: 235 QAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293 + +E I + LA F G+D + +V + + Q+ + +YDP+ V L++ Sbjct: 240 SDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLNE- 298 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEIN--------TKSI 345 +R+ PE Q +P P +E D K + Y+ N +K+I Sbjct: 299 -ERTGRKDPEI-----QGVPGAVSNIGP----VEGLDNKGQIDTYKKNQVTTNNELSKTI 348 Query: 346 ATTHDNY-KLERLSIAVVVNKGRLTEVLGRSADQGK-----IDSYLAEINKIVSAATGIN 399 T + + R S AV ++ G+ +V+ + D LA + IV + Sbjct: 349 TNTKKQFATVLRTSAAVTID-GKYQDVVDENGDVKSEYVPLTKEELASVESIVKNTINFS 407 Query: 400 SRRGDTITITSMDF 413 + RGD++ + ++ F Sbjct: 408 ATRGDSVVVQNLPF 421 >gi|284989556|ref|YP_003408110.1| flagellar M-ring protein FliF [Geodermatophilus obscurus DSM 43160] gi|284062801|gb|ADB73739.1| flagellar M-ring protein FliF [Geodermatophilus obscurus DSM 43160] Length = 527 Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 99/376 (26%), Positives = 185/376 (49%), Gaps = 23/376 (6%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 ++ +P Y L+ L +D + I L+ A + ++D G +I VP+ V R+ ++ +G Sbjct: 44 WITAPTYAPLFSNLASTDASAIVDELNAAGAAYELADGGGTIMVPNEQVYDLRLSMSGKG 103 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP+ + ++GY L D+ + F Q++T RAL+ E+ART++S+ G+ A VH+ +P+ Sbjct: 104 LPAGN-DTGYALLDE-QGITTSEFQQQVTYQRALQDELARTLESLEGVRTAVVHLALPEE 161 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F A PTASV++ + S +A+ +LV++++ +D VTV D+TG +L+A Sbjct: 162 EVFASDEAEPTASVLLDLAPGTGLDSGQVQAVTNLVSSSIEGMDPEQVTVADATGAVLSA 221 Query: 220 -NEMERNILGKSLS-IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 + + G + S + Q + + N L LG + +V A++++D R Sbjct: 222 PGQGVTSAAGDARSQLEQDYEARLASNAQAVLDPILGPGRAKVSVRADVDLDQ---RSTT 278 Query: 278 YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSN 337 + + E + +S+ E + +AV + +D S N K+ +N Sbjct: 279 SETHTYEEGTPPISESTTTEEYTGNGAAVGGILGPENQADAGGGTGDSAYN--KESTTAN 336 Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG 397 + T ++ RL+++VV+++ A G ++ A+I +V A G Sbjct: 337 NAVGTTVETVEGAPGRINRLTVSVVMDE----------AVAGNLNQ--AQIQALVGNAIG 384 Query: 398 INSRRGDTITITSMDF 413 ++ RGD IT+ SM F Sbjct: 385 LDVARGDDITVASMAF 400 >gi|254255067|ref|ZP_04948384.1| Flagellar biosynthesis/type III secretory pathway lipoprotein [Burkholderia dolosa AUO158] gi|124899712|gb|EAY71555.1| Flagellar biosynthesis/type III secretory pathway lipoprotein [Burkholderia dolosa AUO158] Length = 537 Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 99/360 (27%), Positives = 173/360 (48%), Gaps = 33/360 (9%) Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L I +RI + VP S +G R+ LAA+G+ + +G + DK + G++ F+ Sbjct: 72 LETEGIPYRIHPESGQVLVPESQLGATRMLLAAKGV-VAKLPAGLDQVDKSDPLGVSQFV 130 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINPSVY 185 Q++ R LEGE+ R+I S+ + +ARVH+ + SF G + +ASV++ Sbjct: 131 QDVRFRRGLEGELVRSIVSVEPVESARVHLSVAKSSSFILADGDKSSASVVLTLKQGRTL 190 Query: 186 KSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEM 243 K + AI LVA +V NLD VTV+D G L+A + I+ E Sbjct: 191 KKDQISAIVALVAGSVANLDPSRVTVVDQAGNHLSALIDPDSAAATDGEFGARIREETLR 250 Query: 244 NINKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 NI + L LG NFR++V AE++ D ++ RE D + ++ ++A R E Sbjct: 251 NIRELLLPTLGDGNFRASVTAEIDHDRVEETRERYGD-------TPKVMQEATRDERDGA 303 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSN-----YEINTKSIATTHDNYKLERL 357 ++AV V ++ S+R + P + + D ++ N + + + +L+RL Sbjct: 304 QAAVGVPGSL---SNRPIAPPAASQTADAQQSGRNAQTRQFAYDRNVVKIKRSPARLKRL 360 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAE----INKIVSAATGINSRRGDTITITSMDF 413 ++AVV+N +A G ++ E I+ ++ GI+ R D + ++++DF Sbjct: 361 NVAVVINN---------AAAPGGAKAWTPEQIERIDAVLRNGLGIDGARDDALVVSALDF 411 >gi|89072278|ref|ZP_01158857.1| flagellar M-ring protein [Photobacterium sp. SKA34] gi|89051810|gb|EAR57262.1| flagellar M-ring protein [Photobacterium sp. SKA34] Length = 582 Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 108/389 (27%), Positives = 186/389 (47%), Gaps = 39/389 (10%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +S +Y LY + E D I L I +R+ + + V S V K R+ LAA+G Sbjct: 62 WSSSQNYRPLYGQQERFDSGEIISVLETEGIPYRLQEANGQVLVAESEVAKIRMLLAAKG 121 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 + + +G + + +S G + FM+ LEGE+ RTI ++ I ARVH+ +P Sbjct: 122 IKAKLP-TGLDSLKEDSSLGTSQFMETARYRHGLEGELVRTIIALDAIANARVHLAIPRK 180 Query: 162 GSFRKIGAR-PTASVMIRAINPS---VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + A PTASVM+ + P + EAI +LV +V + +V+V+D G+LL Sbjct: 181 TLFVRHNAEAPTASVMVE-LKPGEDLKTEQVEAIINLVTGSVTGMKTENVSVVDQYGRLL 239 Query: 218 TAN----EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQ 272 +A+ EM + + K L + +++++ L +G N+R V A+L+ Q+ Sbjct: 240 SADIGSAEMGK-VNAKYLDYQKNLENQVIQRAADMLTPIVGPSNYRVQVAADLDFSHVQE 298 Query: 273 IREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332 +E+V S + K+ R E + S + +P K P+ EN D K Sbjct: 299 TKEVV--------DSTPVVKNEHRIENN---SIDNIALGVPGSLSNKPPVTGEEENKDSK 347 Query: 333 EEQSNYEINTK---SIATTHDNY---KLERLSIAVVVNKGRLTEVLGRSADQGK--IDSY 384 EIN + + H Y KL +L+++V++N +A GK ++ Sbjct: 348 NTNERTEINRQYALGSSVRHTQYQQGKLNKLNVSVLLN--------STAAPNGKAWTEAE 399 Query: 385 LAEINKIVSAATGINSRRGDTITITSMDF 413 +I+ ++ A GI++ RGD+++I S +F Sbjct: 400 TQQISNMIKDAVGISADRGDSLSILSFNF 428 >gi|119947167|ref|YP_944847.1| flagellar MS-ring protein [Psychromonas ingrahamii 37] gi|119865771|gb|ABM05248.1| flagellar M-ring protein FliF [Psychromonas ingrahamii 37] Length = 582 Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 108/408 (26%), Positives = 195/408 (47%), Gaps = 33/408 (8%) Query: 27 SVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVP 86 +V L ++ + + +S +Y LY E + + I AL NI +++ + I V Sbjct: 66 TVFLTALVTILVILLWSSSSNYRPLYGIQEPYNNSDILAALEAENIKYQMQPDTGLILVE 125 Query: 87 SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146 V K R+ LAA+G+ ++ G + K ++ G + F++ LEGE+A+TI S+ Sbjct: 126 DGEVAKIRMLLAAKGVKATLP-EGLSVLGKQSALGTSQFIENARYNLGLEGELAKTIMSL 184 Query: 147 SGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLD 203 + I ARVH+ +P F G TA+VM+ + A+ +I +LVA +V NL+ Sbjct: 185 NAINNARVHLAIPKENLFVGRGDNIATAAVMLDVKSGDKLSVAQITSIMNLVAGSVNNLN 244 Query: 204 MGDVTVLDSTGKLLT--ANEMERNIL-GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRS 260 V++ D +G+LL+ N+ E ++ K L I+ +I+ L LG +NFR Sbjct: 245 PESVSITDQSGRLLSDDVNDGEYSLASSKQLEYKAGIEQQIKKQAKSMLIPILGENNFRI 304 Query: 261 AVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNM---PHVSD 317 A+++ +Q +D + + + D Q + A+ + ++ P V D Sbjct: 305 ESAADIDFSKKQETMERFDATPVLLSEMSIEDD------DQSDIAIGIPGSLSSTPPVVD 358 Query: 318 RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK-----GRLTEVL 372 + P + + ++E Y + + T + K+ +S++VV+NK G T Sbjct: 359 GQESTPNNSKKKLRRELNRKYAVGSSVTHTEYQQGKINHISLSVVINKDIAPDGEWT--- 415 Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 AD+ L++IN ++S+A G++ RGD+I +TS F Q+ N Sbjct: 416 ---ADE------LSKINAMISSAVGLDLNRGDSINVTSFTFSPIQVTN 454 >gi|255022056|ref|ZP_05294062.1| Flagellar M-ring protein fliF [Acidithiobacillus caldus ATCC 51756] gi|254968542|gb|EET26098.1| Flagellar M-ring protein fliF [Acidithiobacillus caldus ATCC 51756] Length = 599 Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 97/372 (26%), Positives = 175/372 (47%), Gaps = 38/372 (10%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 R R+ IL + LV + + V+ Y +Y L + AL + I FR+ D Sbjct: 24 RQRLTILGGIALV-LAASLGIGEAVSHTSYAVVYSGLSPQTGGSVIAALQKGGIPFRLLD 82 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 NG+ I VP + + R+ LA QGLP+ ++++ + G +SF++ T +RALE Sbjct: 83 NGNVIEVPKADAARVRLQLAEQGLPAQATSALWHQLQN-EKLGTSSFVEHTTYIRALEAG 141 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195 +++ I+SI G+ AA V++ +P+ F + P A+V ++ + P + + E I HLV Sbjct: 142 LSKDIESIQGVEAATVNLAIPNRTPFLERMPSPKAAVTLK-LAPGMMLTQEQVYGITHLV 200 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFL-- 253 A++VP L G VTV+D G+ LTA G S + +Q +E K + L Sbjct: 201 ASSVPGLKAGSVTVVDQYGRALTAKPT-----GSQSSAILRLQQRVESAYRKQIVDLLAP 255 Query: 254 ---GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS---------- 300 G N R AV A +++ Q + Y V ++ S+ + +S Sbjct: 256 IVGGKRNLRVAVDANIDLSHTQKSFVTYGMGHVVTAAVESSRTKGSASSSTFGIPGALSN 315 Query: 301 ----QPESAVTVEQN--MPHVSDRKVP--LPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 P++ +T P ++ +++ +PRS + ++ +Y ++ T + + Sbjct: 316 QPPGNPQAPITAPATSAAPGLTLQEIRAMIPRS----SQANQRFHYVLDKTVGFTKGEPW 371 Query: 353 KLERLSIAVVVN 364 +L LS++V++N Sbjct: 372 RLTSLSVSVLIN 383 >gi|296133049|ref|YP_003640296.1| flagellar M-ring protein FliF [Thermincola sp. JR] gi|296031627|gb|ADG82395.1| flagellar M-ring protein FliF [Thermincola potens JR] Length = 517 Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 105/400 (26%), Positives = 188/400 (47%), Gaps = 39/400 (9%) Query: 33 IMLFMAARFFVNS----------PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 I++ ++A F V + P Y L+ +L+ D + L E I ++++D G++ Sbjct: 25 IVIIVSALFLVGTLAVLVRGATRPDYAPLFTQLDPQDAGKTVEWLKENKIPYQLADGGTT 84 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VPS V + RI L+++G P+ G+E FD+ FG T + +RAL+GE+ RT Sbjct: 85 ILVPSKDVDQTRISLSSEGYPTGGV-VGFEAFDQ-TKFGETDTDRRARFIRALQGELTRT 142 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIR---HLVAAAV 199 I+ S + ARVHIV+P+ F + TA+V ++ + P+ ++ LVA +V Sbjct: 143 IERFSEVDKARVHIVLPEPSLFLEEQKNATAAVWLQ-LKPTKTLDENQVKGLVKLVANSV 201 Query: 200 PNLDMGDVTVLDSTGKLLT-----ANEMERNILGKS-LSIVQAIQHEIEMNINKALAAFL 253 L +VTV+D G +L+ + E ++ L + L I + Q +++ ++ L + Sbjct: 202 EGLSPENVTVVDMNGNILSESLDFSKEAQQQKLSMTQLEIQKTFQADLQRSLQSMLEKVV 261 Query: 254 GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP 313 G+ V AEL+ D Q + Y D V + + + S T+ P++ N+P Sbjct: 262 GIGKVVCRVRAELDFDQIQKKTENYG-DKHVLSEQKTEQSSSSSNTATPQNTPGTAGNIP 320 Query: 314 HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373 ++D NY + + T ++RLS++V+++K Sbjct: 321 GYVATGGNSNSQSSSSDVVR---NYVHDKEETVQTVAPGSVKRLSVSVMIDK-------- 369 Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 + +Q + + I + V A GIN RGD +++ M F Sbjct: 370 -AINQQQQKA----IEEAVVNAAGINRDRGDQVSVIGMPF 404 >gi|58582224|ref|YP_201240.1| flagellar MS-ring protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624117|ref|YP_451489.1| flagellar MS-ring protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188576784|ref|YP_001913713.1| flagellar MS-ring protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188576976|ref|YP_001913905.1| flagellar MS-ring protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|58426818|gb|AAW75855.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368057|dbj|BAE69215.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188521236|gb|ACD59181.1| flagellar M-ring protein FliF [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521428|gb|ACD59373.1| flagellar M-ring protein FliF [Xanthomonas oryzae pv. oryzae PXO99A] Length = 574 Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 128/569 (22%), Positives = 250/569 (43%), Gaps = 38/569 (6%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 Q+F +SL TR L + ++I + + +A F+ P Y +LY L+ + L Sbjct: 19 QWFDRVSSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAADLLR 78 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 A I ++I +ISVP + AR+ LA GL + G+EL +K FG++ F++ Sbjct: 79 TAQIPYKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQFVEN 138 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYK 186 ALE E++RTI ++ + ARVH+ +P +F + +ASV+ +R Sbjct: 139 ARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQGLERN 198 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN-- 244 +AI +LVA+++PN+ VTV+D +G++L+ + + + Q + E N Sbjct: 199 QVDAIVNLVASSIPNITPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESSYNQR 258 Query: 245 INKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 I + L G +++ ++ RE+ Y+ + RS +++ + + + P+ Sbjct: 259 IRELLEPMTGPGRVNPETSVDMDFSVVEEAREL-YNGEPAKLRSEQVNDTS--TTATGPQ 315 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE-------- 355 N P + + T+S + NY+L+ Sbjct: 316 GPPGATSNSPGQPPAPAAAGAPGTPAAANGQATAAAAPTESSKSATRNYELDRTLQHTRQ 375 Query: 356 ------RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 R+S+AV+++ G+ +Q + L I +V A G ++ RGDT+++ Sbjct: 376 PAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQAVGFDAARGDTVSVM 435 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL--GL--HALRRLHN 465 + F+ + +G + + V N L LVG L+V L G+ LR+L Sbjct: 436 NAPFVREAV--AGEEGPKWWED-----PRVQNGLRLLVGALVVLALLFGVVRPTLRQLTG 488 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 + K+ + G + +P + ++ +++ L +D S + + I + Sbjct: 489 VTPIKEKQRKGGNDGTP----QSADVRMVDDEDSLLPHMGEDTASIGQERKPAIALPDAY 544 Query: 526 QSDLRLL-HMIEINEERFAKILRKWARSE 553 + +R+ ++ + +R A++++ W SE Sbjct: 545 EERMRVAREAVKADSKRVAQVVKGWVASE 573 >gi|103488413|ref|YP_617974.1| flagellar M-ring protein FliF [Sphingopyxis alaskensis RB2256] gi|98978490|gb|ABF54641.1| flagellar M-ring protein FliF [Sphingopyxis alaskensis RB2256] Length = 551 Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 108/391 (27%), Positives = 184/391 (47%), Gaps = 36/391 (9%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 A F + + L+ L+ +D ++ AL I I +++V + + +ARI LA Sbjct: 58 AYFTMQTAPQAQLFAGLDDADKAAVAEALQAQGIGHSIDGTTGALTVDADKLHQARIALA 117 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 QGLP ++ SG L + + E R A E +++RTI++I + +ARVHI Sbjct: 118 GQGLPKAAP-SGDSLIAALPMGSSRAIEGEALR-SAREADLSRTIETIDAVKSARVHIAA 175 Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 + F + TASVM+ N +AIR LVA++VP ++ V+V+D G L Sbjct: 176 AEPSLFVRDDKPATASVMLTLQNGRALGDGQVQAIRFLVASSVPGMNADQVSVIDQRGAL 235 Query: 217 LTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM-DTQQIRE 275 L+ ++ K+ + ++ ++ L LG N+ V A+++M ++Q RE Sbjct: 236 LSDTASGSDM--KAFQLQLQVEDRFRRALDTLLGPMLGAGNYTVEVHADVDMSESQATRE 293 Query: 276 IVYDPD-----SKVERSIRLSKDAQR-----SETSQPESAVTVEQNMPHVSDRKVPLPRS 325 + D ++ RS+ + +A + +QP A T+ P + PLP + Sbjct: 294 SFPENDRALTSEQITRSVSGTANAPAVGIPGALANQPPQATTITAEGPQPAPANAPLPGT 353 Query: 326 LENTDKKEEQSNYEINTKSIATTHD-NYKLERLSIAVVVNKGR--LTEVLGRSADQGKID 382 N + YE+ + I+ TH KL R+S+AV +N+G+ LT+ AD Sbjct: 354 ESNENAARA---YEVG-REISVTHSPQGKLRRVSVAVALNQGKKALTQ-----AD----- 399 Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413 LA+I+ +V A G ++ RGD + I F Sbjct: 400 --LAKIDALVKGAIGYDAARGDMVAINQRPF 428 >gi|28211331|ref|NP_782275.1| flagellar MS-ring protein [Clostridium tetani E88] gi|28203771|gb|AAO36212.1| flagellar M-ring protein fliF [Clostridium tetani E88] Length = 521 Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 111/387 (28%), Positives = 186/387 (48%), Gaps = 45/387 (11%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 +++ P Y L+ +E D+ + L ++ +F++ +G++I VP V R+ + +Q Sbjct: 43 YISKPKYAILFSNMEQEDMGTVYNKLKDSKENFKV--DGNTILVPREKVDSLRMEVMSQ- 99 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 +P + ++G+EL DK N FG T +I RAL+GEI RTI+ I ARVH+VMP+ Sbjct: 100 VPIKNGSNGFELLDK-NKFGATEEEMKINYQRALQGEIERTIKGFPEIENARVHLVMPED 158 Query: 162 GSFRKIGARPTASVMIRAINPSVYKS-----AEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 F K AS+ ++ I P YK +AI L + +V NL +V + D T ++ Sbjct: 159 SVFIKDDTPAKASITLK-IKP--YKKITDNQVKAIVALASGSVKNLPKENVEIND-TNQI 214 Query: 217 LTANEMERNILGKSLSI--VQAIQHE----IEMNINKALAAFLGVDNFRSAVVAELNMDT 270 LT + + + S SI QA++ E +E + L A G + + + A+LN D Sbjct: 215 LTKDLFKEDEFDSSESIQKQQALKKEYEKTLEDKVTSMLEAVYGKERAKIKINADLNFDA 274 Query: 271 QQIREIVYDPDSKV--ERSIRLSKDAQRSETSQPESAVTVEQNMPHVS--DRKVPLPRSL 326 Q +YDP + V E+++ K+ V+ NM + + + K L Sbjct: 275 IQDESTIYDPKNVVVSEKNV---KETTPGGNDLATGGSPVDDNMRNRAGNNEKDALVTHE 331 Query: 327 ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLA 386 EN NYE++ + T + RL+++VV++ G L R+A Sbjct: 332 ENV------RNYEVSERKNKTLRAPGSVRRLTVSVVLD-GNLDNAT-RNA---------- 373 Query: 387 EINKIVSAATGINSRRGDTITITSMDF 413 + V +A G N +RGDTI++ + F Sbjct: 374 -VQNTVKSAVGYNEQRGDTISVEGLPF 399 >gi|239826613|ref|YP_002949237.1| flagellar MS-ring protein [Geobacillus sp. WCH70] gi|239806906|gb|ACS23971.1| flagellar M-ring protein FliF [Geobacillus sp. WCH70] Length = 527 Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 107/418 (25%), Positives = 186/418 (44%), Gaps = 26/418 (6%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L + F+K T + + + +AS+ L +++ A +F + LY L + +I Sbjct: 9 LSRFTLFWKERTK--KQKWIAIASLALF-LLITGVAIYFATRTEFAPLYSNLTPQEAGQI 65 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L + + ++DNG++I VP +V ++ LAA+G+P+S + Y F K SFG+T Sbjct: 66 KATLDQRGVKSEVADNGTTIKVPKELVNSLKVDLAAEGIPNSGT-IDYSYFGKNASFGMT 124 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 + ++ A++ E+A I+SI G+ A+V I +P F ++ ++ P Sbjct: 125 DNEFNVVKLEAMQNELANLIKSIDGVEDAKVMINLPQPSVFASDDQGEASASIVLKTKPG 184 Query: 184 VYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240 S + IR HLV+ +VPNL ++ +++ + E G + + Q I+ + Sbjct: 185 YQFSDQQIRALYHLVSKSVPNLPTDNIVIMNQFFEYFDLKNNENFSTGTTFATQQEIKKQ 244 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMD---TQQIRE--IVYDPDSKVERSIRLS---- 291 IE +I + + LG + VV + D TQ+ RE +V D K I +S Sbjct: 245 IERDIQRQVQQMLGTMMGQDKVVVSVTADVDFTQENREENLVAPVDEKNNEGIAVSVQRI 304 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 K+ + +QP +N V + + + ++ EE N E+N Sbjct: 305 KETYSGKGAQPGGVAGTGEN--EVPSYQAGASETNGDYERTEETINNEVNKIKKHIVESP 362 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSA--ATGINSRRGDTIT 407 YK+ L I V+V S Q ID +I KI+ T IN + G T+T Sbjct: 363 YKIRDLGIQVMVEPPNPKN--PNSLPQQTID----DIQKILGTIVRTSINKQDGQTLT 414 >gi|289666081|ref|ZP_06487662.1| flagellar MS-ring protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 574 Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 130/569 (22%), Positives = 251/569 (44%), Gaps = 38/569 (6%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 Q+F SL TR L + ++I + + +A F+ P Y +LY L+ + L Sbjct: 19 QWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAADLLR 78 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 A I ++I +ISVP + AR+ LA GL + G+EL +K FG++ F++ Sbjct: 79 TAQIPYKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQFVEN 138 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYK 186 ALE E++RTI ++ + ARVH+ +P +F + +ASV+ +R Sbjct: 139 ARYQHALETELSRTISTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQGLERN 198 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN-- 244 +AI +LVA+++P++ VTV+D +G++L+ + + + Q + E N Sbjct: 199 QVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESSYNQR 258 Query: 245 INKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 I + L G +++ ++ RE+ Y+ + RS +++ + + + P+ Sbjct: 259 IRELLEPMTGPGRVNPETSVDMDFSVVEEAREL-YNGEPAKLRSEQVNDTS--TTATGPQ 315 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE-------- 355 N P + + T+S + NY+L+ Sbjct: 316 GPPGATSNSPGQPPAPAAAGAPGTPAAANGQATAAAAPTESSKSATRNYELDRTLQHTRQ 375 Query: 356 ------RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 R+S+AV+++ G+ +Q + L I +V A G ++ RGDT+++ Sbjct: 376 PAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQAVGFDAARGDTVSVM 435 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL--GL--HALRRLHN 465 + F+ + +G + + V N L LVG ++V L G+ LR+L Sbjct: 436 NAPFVREAV--AGEEGPKWWED-----PRVQNGLRLLVGAVVVLALLFGVVRPTLRQLTG 488 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 + K + GK+ P S+ V ++ D+ L +D S ++ ++ I + Sbjct: 489 VTAVKDKQ--GKAGKDGTPQSADVR--MVDEDDELLPHMGEDTASIGQDRKTPIALPDAY 544 Query: 526 QSDLRLL-HMIEINEERFAKILRKWARSE 553 + +R+ ++ + +R A++++ W SE Sbjct: 545 EERMRVAREAVKADSKRVAQVVKGWVASE 573 >gi|20807889|ref|NP_623060.1| flagellar biosynthesis/type III secretory pathway lipoprotein [Thermoanaerobacter tengcongensis MB4] gi|20516454|gb|AAM24664.1| Flagellar biosynthesis/type III secretory pathway lipoprotein [Thermoanaerobacter tengcongensis MB4] Length = 503 Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 127/470 (27%), Positives = 220/470 (46%), Gaps = 57/470 (12%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 +QLL F+ + ++ ++A ++ + I L + + N P+Y LY L + D + Sbjct: 10 EQLLNFWNKFDKKQKIQLTVIAILVFISISLLV---YIANRPNYVVLYSNLSLKDAGIVV 66 Query: 65 VAL-SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV-NSFGL 122 L S+ + +++SDNG++I VP+ + R+ LA +G+P G+ D + NS Sbjct: 67 EKLKSDFKVPYKLSDNGTTILVPAQYKDEIRMKLATEGIPQ----GGFSFQDAMNNSLST 122 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMIR-- 178 T + + ++ EI ++++I G+ A V+IV+PD +F + TA+VM+ Sbjct: 123 TDQERRQKYLYFVQNEIQNSLKTIEGVQDAIVNIVVPDQNAFVLSNTTNQATAAVMLTLK 182 Query: 179 ---AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ 235 + PS K I V+ +V L +VTV+DSTGK+LT E + + ++ S Sbjct: 183 PGATLTPSQVK---GIIDFVSKSVEGLKPENVTVIDSTGKILTP---ESDSIAENASNQF 236 Query: 236 AIQHEIEMNINKALAAFL----GVDNFRSAVVAELNMDTQQIREIVYDP----DSK-VER 286 A+Q +++ ++ +L L G N LN D + I Y P D+K + R Sbjct: 237 ALQKKVQEDLQNSLQTLLEQVFGPGNVVVRANVRLNFDKKTEDRIEYTPVQGNDNKGIVR 296 Query: 287 SIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSI 345 S++ L + A +++ P T N P V +++ + + DK E NYEIN Sbjct: 297 SVQELKEKATGTQSGSPPGQPT---NNPPVYNQQ---NNNTSSYDKTETTINYEINQIKT 350 Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 K+E +S+AVVVNK L S Q +I +V+ A G N+ + Sbjct: 351 TLVEAQGKIESISVAVVVNKP-----LNASMQQ--------QIADLVANAAGGNNVK--- 394 Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455 +++ + F ++ L + Q + + +I AL VG LV FL Sbjct: 395 VSVQGIPFNQD-LLKAMQAQKKVAQGMPIYLWGIIAALA--VGGGLVAFL 441 >gi|307699904|ref|ZP_07636955.1| flagellar M-ring protein FliF [Mobiluncus mulieris FB024-16] gi|307614942|gb|EFN94160.1| flagellar M-ring protein FliF [Mobiluncus mulieris FB024-16] Length = 536 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 106/392 (27%), Positives = 187/392 (47%), Gaps = 59/392 (15%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 +V P Y L+ L D ++ L I ++++DNG + VPS+ + +AR+ LAA Sbjct: 44 WVGRPSYTVLFSGLTEKDQAAVTQQLDATGIKYQVADNGI-VKVPSNDIQRARMDLAANN 102 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP+ + +GY + D + + F Q++ + RALEGE+A+TI S+ I + V + +P Sbjct: 103 LPAEPT-TGYAVLDNL-GVAASDFQQQMAKKRALEGELAKTINSMDVIEKSSVALAIPAE 160 Query: 162 GSFRKIGARPTASVMIRAINPSVYK-----SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 F +P A+ + P + + +AI ++V+A++PNL G V+V+D+ G Sbjct: 161 TVFADP-KKPVATTASVTVEPKKGREVDNNTVQAIVNMVSASIPNLAKGGVSVVDTAGNT 219 Query: 217 LT---------ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELN 267 L+ A E E++++ K+L++V+ + +GV N + + EL Sbjct: 220 LSDKVSAGSAAATETEKSLVAKALAMVEPL---------------VGVGNAKVSAHVELA 264 Query: 268 MDTQQIREIVY-DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSL 326 +T+Q VY DP+ V+ +LS ++ SE AV P + P L Sbjct: 265 QETEQKTTRVYTDPEGGVK---QLSS-SKASENYSGSGAVVAGVLGPD----NIGNPYEL 316 Query: 327 ENTDKKEEQSNYEINTKSI-----ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI 381 N + + ++N +N ++ TT +I+VV+N + R D Sbjct: 317 RNGNGGKYENNQTVNNNAVNEELTNTTRSPGAAMSKTISVVLN-----QETARRLD---- 367 Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 + ++ V+AATGIN+ RGD I ++ F Sbjct: 368 ---MTQVRDSVAAATGINAARGDVINVSRAPF 396 >gi|332799173|ref|YP_004460672.1| flagellar M-ring protein FliF [Tepidanaerobacter sp. Re1] gi|332696908|gb|AEE91365.1| flagellar M-ring protein FliF [Tepidanaerobacter sp. Re1] Length = 519 Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 103/401 (25%), Positives = 189/401 (47%), Gaps = 50/401 (12%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92 IML++ +R P Y LY L++SD I L + NI + + D G +I V K Sbjct: 39 IMLYLISR-----PKYVPLYTNLDISDAGEIVKKLDDLNISYELEDGGKTILVDPEQKYK 93 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 R+ LA +GLP S+S+ E+F+K G T + +++ +AL+GE+ + I+ + + +A Sbjct: 94 TRLTLAQEGLPKSNSSGFDEMFNKT-RLGTTDWERQVQYNQALQGELTKAIEMMESVESA 152 Query: 153 RVHIVMPDMGSFRKIGA--RPTASVMIRAINPSVYKSAEAIR---HLVAAAVPNLDMGDV 207 RV+IV + F + + P+A++ + + P + E I +LV +V N+ +V Sbjct: 153 RVYIVQQEKSLFIEPDSNYEPSAAIFLE-VKPGAQMTKEEIMGIINLVTYSVKNMKQENV 211 Query: 208 TVLDSTGKLL-----TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAV 262 V+D GK L + +E ++ L I Q++++ ++ L G N V Sbjct: 212 VVVDQYGKTLSNAAISQSEDNEELINNQLVIQDNFQNQLQASVQSLLEQIFGPGNVAVRV 271 Query: 263 VAELNMDTQQIREIVYDPDSK-----VERSIRLSKDAQRSETSQPESAVTVEQNMPHVSD 317 A+LN D + ++ ++ P ++ + RSI+ K+ V+ N+P + Sbjct: 272 NAKLNFDKKIVQNKLFAPVNEETGEGIVRSIQELKEHFSGTGGAYGGTPGVDSNVPGYNQ 331 Query: 318 RKVPLPRSLENTDKKEEQ-----SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372 + T + E+Q N+EIN + T +++L+++VV+N Sbjct: 332 TQ---------TGESEQQRSEVIRNFEINETNENLTVAPGAVDKLTVSVVIN-------- 374 Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 + + + DS I ++V A G + R D I+I M+F Sbjct: 375 -QELNDAEKDS----ITQVVGNAIGYDPER-DQISIEGMEF 409 >gi|167626144|ref|YP_001676438.1| flagellar MS-ring protein [Shewanella halifaxensis HAW-EB4] gi|167356166|gb|ABZ78779.1| flagellar M-ring protein FliF [Shewanella halifaxensis HAW-EB4] Length = 572 Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 152/586 (25%), Positives = 256/586 (43%), Gaps = 90/586 (15%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 QF + IL + + ++ +ML+ + Y LY E + + I L Sbjct: 31 QFSRGDRHAATLAILAIVAACVIVLMLWSTGQ------GYSPLYGNQENVETSHIIEVLE 84 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 I +R+ I VP VG AR+ LAA+G+ + SG E D ++ G + FM++ Sbjct: 85 AEGISYRLDPTSGLILVPEDRVGNARMVLAARGV-KAKVPSGMESLDS-SAIGTSQFMEQ 142 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMI-----RAINP 182 +LEGE++RTI ++ + ARVH+ +P F R+ P+ASVM+ + + P Sbjct: 143 AKYRYSLEGELSRTIMALKSVKTARVHLAIPKKTLFIRQQPELPSASVMLDLYAGQHLQP 202 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQ 238 S I +LVA +V + V ++D G L+ AN+ K L Q ++ Sbjct: 203 EQITS---IANLVAGSVTGMTPERVQIVDQEGNHLSSEINANQDLTQARDKQLQYTQELE 259 Query: 239 HEIEMNINKA---LAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPDSKVERSIRLSKDA 294 + IN+A L LG DNF+ V A +N + ++ RE + DP + V S++ Sbjct: 260 QSL---INRASSMLQPILGQDNFQVQVAALVNFNQVEETRESL-DPQTVV------SQEK 309 Query: 295 QRSETSQPESAVTVE---QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 Q + + + A+ + N P +D S N +++E + +E+ T + Sbjct: 310 QSTNQTSGDMALGIPGALSNQPPTADAAT--NNSTSNLNQQESR-QFEVGRSVKHTRYQQ 366 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 +LE LSI+V++N E G L +++ +V A G ++ RGD +I+S Sbjct: 367 MQLENLSISVLLNNQAAGET-------GWTQPQLDQMSTMVQDAIGYSAARGDQFSISS- 418 Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINA-LVFLVGTLLVTFLGLHALRRL------- 463 FN V+++ + L A L + +G +L + LR L Sbjct: 419 -------FNFAPVKIAEFEPLPWWQGESYQAYLRYFIGAILGLGMIFFVLRPLVQHLTRT 471 Query: 464 --HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPN------DN-IALDSSN-QDIFSHSR 513 HNI D + L PP + A T L + DN +AL+++N ++ + Sbjct: 472 VEHNIKDT----LPSTQPLMPP--AEAATAHLSQDAAQEAADNLVALNNANINSNWTSNL 525 Query: 514 NLQSRINSYVSKQSDLRLLHMIEINEE--RFAKILRKWARSEIEDR 557 NL + + + L LL N+E R A+++ W I DR Sbjct: 526 NLPAPGSPLTVQMEHLSLL----ANQEPARVAEVISHW----ISDR 563 >gi|260779317|ref|ZP_05888209.1| flagellar M-ring protein FliF [Vibrio coralliilyticus ATCC BAA-450] gi|260605481|gb|EEX31776.1| flagellar M-ring protein FliF [Vibrio coralliilyticus ATCC BAA-450] Length = 556 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 102/378 (26%), Positives = 182/378 (48%), Gaps = 29/378 (7%) Query: 48 YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 Y LY + E D I L I++R+ + + VP V + R+ LAA+G+ + Sbjct: 44 YRPLYSQQERFDTGEIVSVLESEGINYRLQEQNGQVLVPEGEVARIRMLLAAKGV-KAKL 102 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RK 166 +G + + +S G + FM+ LEGE+ RTI S++ + ARVH+ +P F R+ Sbjct: 103 PTGLDSLKEDSSLGTSQFMETARYRHGLEGELIRTIISLNAVSNARVHLAIPRQTLFVRQ 162 Query: 167 IGARPTASVMIRAINPS---VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--- 220 P+ASVM+ + P + EAI +L+ +V + V+V+D G+LL+A+ Sbjct: 163 NSEAPSASVMLE-LKPGEDLKPEQVEAIINLIVGSVTGMKPEQVSVIDQYGRLLSADVAS 221 Query: 221 EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM-DTQQIREIVYD 279 + K L + ++ +I + L +G NFR V A+L+ ++ +EI+ + Sbjct: 222 AEAGKVNAKYLEYQKNVEKQIIQRASDMLTPIVGPSNFRVQVAADLDFSQVEETQEILDN 281 Query: 280 -PDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPHVSDRKVPLPRSLENTDKKEEQ 335 P + E +I S S + A+ V N P V+ +VP S + E Sbjct: 282 TPIVRNEHTI--------SNNSIDQIALGVPGTLSNQPPVTG-EVPTQDSQNTNARSEVN 332 Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395 Y + + T + ++E+LS++V++N+ +AD+ A+I+ +V+ A Sbjct: 333 RQYAVGSSVRRTHYQQGQIEKLSVSVLLNEAAAPNGTAWTADEK------AQISTMVTDA 386 Query: 396 TGINSRRGDTITITSMDF 413 GI + RGD++++ S F Sbjct: 387 VGIAADRGDSLSLMSFSF 404 >gi|223038711|ref|ZP_03609004.1| flagellar M-ring protein FliF [Campylobacter rectus RM3267] gi|222880113|gb|EEF15201.1| flagellar M-ring protein FliF [Campylobacter rectus RM3267] Length = 564 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 129/474 (27%), Positives = 215/474 (45%), Gaps = 57/474 (12%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLE---VSDVNRISVALSEANIDFR 75 R R++ S++LV L + + ++ YD V E +D I L + + ++ Sbjct: 20 RQRLVAAGSIVLVVGFLVFLSIYKSSNEGYDGYSVLFENTSAADSALIIQQLEKDKVKYK 79 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135 I + G+ I VP+S V + RI +A+ G+ G+E+FDK FG T Q++ RAL Sbjct: 80 ILNEGT-ILVPNSDVYRERISIASLGI-LKDGKVGFEIFDK-QEFGATDAEQKVKFQRAL 136 Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEA 190 EGE+ARTI+S++ I A V I +P F + P+AS+++ +++N K Sbjct: 137 EGELARTIESLAPINKAIVRIAIPKETLFTERATPPSASIVLNLKDGQSLN---LKQIAG 193 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI------QHEIEMN 244 I++LVAAAV NL V ++ G L + E + S I Q I +H +E Sbjct: 194 IKNLVAAAVANLKPEQVKIVSQDGVPLGEEDGEYD----SDQITQQIRYKRDAEHNLEEK 249 Query: 245 INKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 I L+ + G D + V + + + + +DP+S + + Q S+ ++ + Sbjct: 250 IINVLSPIVGGADKVVAKVTIDFDFARKDSQSESFDPNSVARSEQNIEEKRQGSKEAEVQ 309 Query: 304 SAVTVEQNMPHVS---DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSI 359 N+ V D K+ E K +NYEI +K + D + K++RLS Sbjct: 310 GVPGAVSNIGPVEGLQDNKMK-----ELYSKSSSTTNYEI-SKKVERVKDQFAKIKRLSA 363 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSY-------LAEINKIVSAATGINSRRGDTITITSMD 412 AVVV+ G+ + + K +Y LA I+ ++ A + RGD IT+++ + Sbjct: 364 AVVVD-GKYENKKDENGNPTKEIAYVPLDENQLARIDALIRQAICFDQNRGDEITVSNFE 422 Query: 413 FLE----------NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456 F N F V F+ IL FA V+ L ++V F+ Sbjct: 423 FQRQDGQTPASKVNSFFE--LYVVPFLPILKYLFAAVL--LYIFYKKVIVPFMA 472 >gi|227876739|ref|ZP_03994848.1| flagellar M-ring protein FliF [Mobiluncus mulieris ATCC 35243] gi|306817686|ref|ZP_07451428.1| flagellar M-ring protein FliF [Mobiluncus mulieris ATCC 35239] gi|227842636|gb|EEJ52836.1| flagellar M-ring protein FliF [Mobiluncus mulieris ATCC 35243] gi|304649500|gb|EFM46783.1| flagellar M-ring protein FliF [Mobiluncus mulieris ATCC 35239] Length = 536 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 104/392 (26%), Positives = 183/392 (46%), Gaps = 59/392 (15%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 +V P Y L+ L D ++ L I ++++DNG + VPS+ + +AR+ LAA Sbjct: 44 WVGRPSYTVLFSGLTEKDQAAVTQQLDATGIKYQVADNGI-VKVPSNDIQRARMDLAANN 102 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP+ + +GY + D + + F Q++ + RALEGE+A+TI S+ I + V + +P Sbjct: 103 LPAEPT-TGYAVLDNL-GVAASDFQQQMAKKRALEGELAKTINSMDVIEKSSVALAIPAE 160 Query: 162 GSFRKIGARPTASVMIRAINPSVYK-----SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 F +P A+ + P + + +AI ++V+A++PNL G V+V+D+ G Sbjct: 161 TVFAD-PKKPVATTASVTVEPKKGREVDNNTVQAIVNMVSASIPNLAKGGVSVVDTAGNT 219 Query: 217 LT---------ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELN 267 L+ A E E++++ K+L++V+ + +GV N + + EL Sbjct: 220 LSDKVSAGSAAATETEKSLVAKALAMVEPL---------------VGVGNAKVSAHVELA 264 Query: 268 MDTQQIREIVY-DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSL 326 +T+Q VY DP+ V K S+ S+ S D + P L Sbjct: 265 QETEQKTTRVYTDPEGGV-------KQLSSSKASENYSGGGAVVGGVLGPDN-IGNPYEL 316 Query: 327 ENTDKKEEQSNYEINTKSI-----ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI 381 N + + ++N +N ++ TT +I+VV+N + R D Sbjct: 317 RNGNGGKYENNQTVNNNAVNEELTNTTRSPGAAMSKTISVVLN-----QETARRLD---- 367 Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 + ++ V+AATGIN+ RGD I ++ F Sbjct: 368 ---MTQVRDSVAAATGINAARGDVINVSRAPF 396 >gi|304321127|ref|YP_003854770.1| flagellar M-ring protein FliF [Parvularcula bermudensis HTCC2503] gi|303300029|gb|ADM09628.1| flagellar M-ring protein FliF [Parvularcula bermudensis HTCC2503] Length = 485 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 115/406 (28%), Positives = 183/406 (45%), Gaps = 32/406 (7%) Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L E + + I +GS+I VP + R+ LA G+P + +GYE+ D +N F TS M Sbjct: 45 LDEMAVPYTI--DGSAIYVPEGERDRLRLELARLGMPPAG-GAGYEILDDLNGFSTTSDM 101 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 + RA EGE+ RTI +I + AARVH+ + +FR+ +ASV + A Sbjct: 102 FDAAYWRAKEGELTRTILAIPTVTAARVHLGVTRQSAFRRARLDKSASVTVEASGGLSKS 161 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE--IEMN 244 A++I++L A AVP L V V+D+ ++ G + I E + Sbjct: 162 QAQSIQYLTALAVPELRPESVAVIDTARGVIAGP----GATGDESPMGDEIDREDRLASR 217 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK--VERSIRLSKDAQRSETSQP 302 + L A +G N R +V +++ + +E V DPDS+ V RSI DA+ S Sbjct: 218 LTHLLEAHVGPGNARVSVAMDIDRQSIAQKERVIDPDSRQIVSRSISEESDAE----SDA 273 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTD-KKEEQSNY---EINTKSIATTHDNYKLERLS 358 + VT+ N+P + P +++E+ Y EI + I T + RLS Sbjct: 274 DIPVTIASNLPDGDAAEDPEEAGTRLVKRRRDEEVTYTGTEIE-RVIETAAGTVR--RLS 330 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF--LEN 416 +AV++N+ G + + + + +V+ A GI RGD + I + F E Sbjct: 331 VAVLLNERYTVNEEGETVPAPRSPEEVEALETLVANAAGIEDERGDRLAIRVLPFEGEEP 390 Query: 417 QLFNS-GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461 QL + G V+ M ++ F V LLV + LR Sbjct: 391 QLVTAPGFVEAHVM-------PRAVDIAQFSVLALLVASIAFFVLR 429 >gi|269976266|ref|ZP_06183262.1| flagellar M-ring protein FliF [Mobiluncus mulieris 28-1] gi|269935595|gb|EEZ92133.1| flagellar M-ring protein FliF [Mobiluncus mulieris 28-1] Length = 536 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 104/392 (26%), Positives = 183/392 (46%), Gaps = 59/392 (15%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 +V P Y L+ L D ++ L I ++++DNG + VPS+ + +AR+ LAA Sbjct: 44 WVGRPSYTVLFSGLTEKDQAAVTQQLDATGIKYQVADNGI-VKVPSNDIQRARMDLAANN 102 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP+ + +GY + D + + F Q++ + RALEGE+A+TI S+ I + V + +P Sbjct: 103 LPAEPT-TGYAVLDNL-GVAASDFQQQMAKKRALEGELAKTINSMDVIEKSSVALAIPAE 160 Query: 162 GSFRKIGARPTASVMIRAINPSVYK-----SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 F +P A+ + P + + +AI ++V+A++PNL G V+V+D+ G Sbjct: 161 TVFAD-PKKPVATTASVTVEPKKGREVDNNTVQAIVNMVSASIPNLAKGGVSVVDTAGNT 219 Query: 217 LT---------ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELN 267 L+ A E E++++ K+L++V+ + +GV N + + EL Sbjct: 220 LSDKVSAGSAAATETEKSLVAKALAMVEPL---------------VGVGNAKVSAHVELA 264 Query: 268 MDTQQIREIVY-DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSL 326 +T+Q VY DP+ V K S+ S+ S D + P L Sbjct: 265 QETEQKTTRVYTDPEGGV-------KQLSSSKASENYSGGGAVVGGVLGPDN-IGNPYEL 316 Query: 327 ENTDKKEEQSNYEINTKSI-----ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI 381 N + + ++N +N ++ TT +I+VV+N + R D Sbjct: 317 RNGNGGKYENNQTVNNNAVNEELTNTTRSPGAAMSKTISVVLN-----QETARRLD---- 367 Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 + ++ V+AATGIN+ RGD I ++ F Sbjct: 368 ---MTQVRDSVAAATGINAARGDVINVSRAPF 396 >gi|90577381|ref|ZP_01233192.1| flagellar M-ring protein [Vibrio angustum S14] gi|90440467|gb|EAS65647.1| flagellar M-ring protein [Vibrio angustum S14] Length = 581 Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 107/388 (27%), Positives = 183/388 (47%), Gaps = 37/388 (9%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +S +Y LY + E D I L I +R+ + + V V K R+ LAA+G Sbjct: 62 WSSSQNYRPLYGQQERFDSGEIISVLETEGIPYRLQEANGQVLVAEGEVAKIRMLLAAKG 121 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 + + +G + + +S G + FM+ LEGE+ RTI ++ I ARVH+ +P Sbjct: 122 IKAKLP-TGLDSLKEDSSLGTSQFMETARYRHGLEGELVRTIIALDAIANARVHLAIPRK 180 Query: 162 GSFRKIGAR-PTASVMIRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + A PTASVM+ K+ EAI +LV +V + +V+V+D G+LL+ Sbjct: 181 TLFVRHNAEAPTASVMVELKPGEDLKTDQVEAIINLVTGSVTGMKTENVSVVDQYGRLLS 240 Query: 219 AN----EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQI 273 A+ EM + + K L + ++ ++ L +G N+R V A+L+ Q+ Sbjct: 241 ADIGSSEMGK-VNAKYLDYQKNLEKQVIQRAADMLTPIVGPSNYRVQVAADLDFSHVQET 299 Query: 274 REIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKE 333 +E+V S + K+ R E + S + +P K P+ EN D K Sbjct: 300 KEVV--------DSTPVVKNEHRIENN---SIDNIALGVPGSLSNKPPVTGEEENKDSKN 348 Query: 334 EQSNYEINTK---SIATTHDNY---KLERLSIAVVVNKGRLTEVLGRSADQGK--IDSYL 385 EIN + + H Y KL +L+++V++N +A GK ++ Sbjct: 349 TNERTEINRQYALGSSVRHTQYQQGKLNKLNVSVLLNS--------TAAPNGKAWTEAET 400 Query: 386 AEINKIVSAATGINSRRGDTITITSMDF 413 +I+ ++ A GI++ RGD+++I S +F Sbjct: 401 QQISNMIKDAVGISADRGDSLSILSFNF 428 >gi|54307259|ref|YP_128279.1| flagellar MS-ring protein [Photobacterium profundum SS9] gi|46911679|emb|CAG18477.1| Hypothetical FliF Flagellar M-ring transmembrane protein [Photobacterium profundum SS9] Length = 560 Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 109/432 (25%), Positives = 202/432 (46%), Gaps = 48/432 (11%) Query: 3 ILDQLLQFFKSGTSLGR----TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 ++ Q L S +++GR TR+++L +I + + + + Y LY + E Sbjct: 4 LMKQRLSNMASPSAMGRLLTGTRLIVLLGLIAALVTTAVVIGLWQGNSQYRPLYGEQEKF 63 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 D +++ L + +D+ I ++ V VGKAR+ LAA G+ + +G ++ + + Sbjct: 64 DRSQVISVLEQQGMDYYIEPQQGNVMVDRDSVGKARLALAAAGI-EAQLPAGLDILSQDS 122 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMI 177 S G + F++ LEGE+A +I ++ I RVH+ +P F R+ +P+ASV++ Sbjct: 123 SLGTSQFIESARYRHGLEGELALSIMALDAISNVRVHLAIPKKTLFVRREKEQPSASVVL 182 Query: 178 RAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-----NEMERNILGKS 230 + + + AI +LVA +VP+L+ V V+D G+LL++ + RN Sbjct: 183 SLSSGRELTTEQVTAIVNLVAGSVPDLNAERVNVIDQKGRLLSSVINREGKHSRNS-SSY 241 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290 L VQ ++ + L +G+DNF+ V A++N D + E Y PD V Sbjct: 242 LEYVQKLEQSYIKRAARMLRPMVGIDNFQVEVAADINYDRTEATEESYAPDGSV------ 295 Query: 291 SKDAQRSETSQPESAV-TVEQNMPHVSDRKVPLPRSLENTDKKEEQS----NYEINTKSI 345 R+E S + + Q +P + P E+ + E+S +Y ++ Sbjct: 296 -----RNEFSTIDRRIGKAAQGVPGALSNRPPEDGEEEDPNAGNERSESSRDYALDRVLK 350 Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY----LAEINKIVSAATGINSR 401 T + +++ LS+++++N G+ D++ LA I ++++ A GIN Sbjct: 351 HTLYQQGQVKSLSVSILLN--------------GQPDTFPPEQLANIKQMLADAIGINEV 396 Query: 402 RGDTITITSMDF 413 RGD +I F Sbjct: 397 RGDQFSILVYPF 408 >gi|323705446|ref|ZP_08117021.1| flagellar M-ring protein FliF [Thermoanaerobacterium xylanolyticum LX-11] gi|323535348|gb|EGB25124.1| flagellar M-ring protein FliF [Thermoanaerobacterium xylanolyticum LX-11] Length = 502 Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 116/465 (24%), Positives = 206/465 (44%), Gaps = 51/465 (10%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 I +Q+ F+ + +I I+A +++ I L + + +N P+Y+ LY L D Sbjct: 8 IREQIDNFWNKFDKKQKIQIGIIALLLIGSIALLL---YILNRPNYEVLYSGLSTKDAGT 64 Query: 63 ISVAL-SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV-NSF 120 + L +E I ++I +GS+I VP+ +AR+ LA +G+P G+ D + NS Sbjct: 65 VVDKLKNELKIPYKIEGDGSTILVPAQYKDEARMQLATEGIPQ----DGFSFSDAMNNSL 120 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMIR 178 T + + ++ EI T+++I G+ A+V+IV+PD +F TA+VM++ Sbjct: 121 ATTDQERREKYIYFVQNEIQNTLKTIDGVQDAKVNIVVPDQSNFVLSNSDNSSTAAVMLQ 180 Query: 179 AINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIV 234 + P V + I + V+ +V L VT++D GK+L A N+ + ++ Sbjct: 181 -LKPGVTLTNQQINGITNFVSKSVQGLSPDKVTIIDGNGKVLVAQNDSSLDGASSQYALQ 239 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLS 291 +Q++++ NI L G N LN D Q ++ + P ++ + RS + Sbjct: 240 MKVQNDLQNNIQSLLEQVFGPGNVIVRASVNLNFDKQVQDKVEWQPVIDNNGIIRSTQTI 299 Query: 292 KD-AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 K+ A S P T N P S + K + NYEIN T Sbjct: 300 KEIANGSSNGAPAGTAT---NNPPGSTTYTTQNNGNSSYSKTDTTINYEINQIKTTLTSA 356 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 K++ +S++VVVN LT + + ++ +VS A G G ++++ Sbjct: 357 QGKIQNISLSVVVNNSNLTPAMKQ------------QLTDLVSNAAG-----GKNVSVSV 399 Query: 411 MDF-----LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL 450 M L NQ+ N+G ++ + ++ ALV G Sbjct: 400 MGIKFNNDLLNQMKNNGKQSFPYV------WLIILGALVLAGGVF 438 >gi|251772444|gb|EES53011.1| flagellar M-ring protein FliF [Leptospirillum ferrodiazotrophum] Length = 530 Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 120/429 (27%), Positives = 196/429 (45%), Gaps = 43/429 (10%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110 LY L +D IS L I + G+ I VP V R+ LA GLP +G Sbjct: 52 LYSHLSPTDSFEISQKLDRMGISYDTDAKGTEIRVPKKQVYMLRMQLADDGLPRHH-GAG 110 Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170 + +F+ S T F+Q + ++AL+ E+ RTI+ +S I ARV IV+P F + Sbjct: 111 FAIFNH-PSLTTTDFVQHVQYLQALQSELDRTIEEMSPIALARVSIVLPRRSVFLRHQKG 169 Query: 171 PTASVMIRAINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL 227 ASV++R + P S ++ HLVA +V L VTV+D+TG +L NE ++ Sbjct: 170 AHASVLVR-LKPGRSLSRAQVKGVVHLVANSVEGLTPDHVTVVDNTGTIL--NEKHPGLI 226 Query: 228 GKSLSIVQ-----AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI--VYDP 280 L+ Q ++H + + L LG ++ V +D +++ E +YDP Sbjct: 227 PGELTKAQLAYQAMVEHRLRNRVQSMLDQVLG--EGQAVVRVNATLDFRRVEETRELYDP 284 Query: 281 DSKVERSIRLSKDAQRSETSQ-----PESAVTVEQNMPHVSDRKV---PL-PRSLENTD- 330 + LS+ + E S P V N+P S+ KV PL P+ T Sbjct: 285 KGRA-----LSEREKLREKSSGTRIVPVGVPGVLSNVPG-SNGKVASPPLGPKDGTQTKY 338 Query: 331 -KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSAD----QGKIDSYL 385 KK++ +Y+++ + R+S++V+VN G+ V G++ + + + L Sbjct: 339 SKKKDIEHYDVSHTMSHIVLPTGTVSRISVSVLVN-GKTRTVTGKTGETQIYEPRTPEEL 397 Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445 A +IV A G ++ RGDT+ + S+ F G Q M + F ++ +F Sbjct: 398 ASFTRIVQNAIGFDATRGDTVVVDSVPFAAAA--PEGKTQEVRMAERLKPFMPLLE--IF 453 Query: 446 LVGTLLVTF 454 L G L++ F Sbjct: 454 LGGLLVLVF 462 >gi|304316908|ref|YP_003852053.1| flagellar M-ring protein FliF [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778410|gb|ADL68969.1| flagellar M-ring protein FliF [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 505 Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 97/347 (27%), Positives = 164/347 (47%), Gaps = 22/347 (6%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVAL-SEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 + +N P+Y+ LY L V D + L +E I ++I NGS+I VP+ +ARI LA Sbjct: 43 YIINRPNYEVLYSDLSVKDAGAVVDKLKNELKIPYKIEGNGSTILVPAQYKDEARIQLAT 102 Query: 100 QGLPSSSSNSGYELFDKV-NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 +G+P G+ D + NS T ++ + ++ EI T+++I G+ A+V+IV+ Sbjct: 103 EGIPQ----DGFSFSDAMNNSLATTDQERKQKYIYFVQNEIQNTLKAIDGVQDAKVNIVV 158 Query: 159 PDMGSF--RKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDST 213 PD +F TA+VM++ + P V + I + V+ +V L VT++D Sbjct: 159 PDENNFVLSNNDNSSTAAVMLQ-LKPGVTLTNQQINGITNFVSKSVEGLSPDKVTIIDGN 217 Query: 214 GKLLTANEMERNILGKS--LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ 271 GK+L A + + ++ G S ++ +Q++++ NI L G N LN D Q Sbjct: 218 GKVLVA-QNDNSLDGASSQYALQMKVQNDLQNNIQSLLEQVFGPGNVIVRASVNLNFDKQ 276 Query: 272 QIREIVYDP---DSKVERSIRLSKD-AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE 327 ++ + P ++ + RS + K+ A S P T N P S Sbjct: 277 VQDKVEWQPVIDNNGIIRSTQTIKEIANGSSNGAPAGTAT---NNPPGSTTYTTQNNGNS 333 Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR 374 N K + NYEIN T K++ +S++VVVN L+ + + Sbjct: 334 NYSKTDTTINYEINQIKTTLTSAQGKIQNISLSVVVNNNNLSPTMKQ 380 >gi|167630289|ref|YP_001680788.1| flagellar m-ring protein flif, putative [Heliobacterium modesticaldum Ice1] gi|167593029|gb|ABZ84777.1| flagellar m-ring protein flif, putative [Heliobacterium modesticaldum Ice1] Length = 511 Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 103/366 (28%), Positives = 173/366 (47%), Gaps = 32/366 (8%) Query: 17 LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76 L R + LIL ++ I+ A + P Y L+ L+ +D I L E +DF++ Sbjct: 4 LSRQQKLILGGSLVAIIVSLAAFVYLAGRPDYVPLFQNLDPADAGAIQAKLKEQKVDFQV 63 Query: 77 SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136 S++G +I VPS RI LA GLP + G+E F++ + FG T +EI A E Sbjct: 64 SEDGKTILVPSKDQASLRIELANSGLP-KGTGWGFETFNE-SRFGETEKEKEIRLKIATE 121 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIR---H 193 E++RT+Q+I G+ ARV IV F+ TASVM+ + P + IR H Sbjct: 122 TELSRTLQNIPGVENARVMIVPATDSLFKGNATDATASVML-ILKPYATLEEKQIRGIIH 180 Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLT--------ANEMERNILGKS-LSIVQAIQHEIEMN 244 LV+ +V L +VTV+D+TG +L+ ++++ + L K+ L + + + +E Sbjct: 181 LVSRSVKQLKPENVTVVDNTGNVLSEGLFTAGGSDKVNLDGLAKAQLQMKKDFEASLEQK 240 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 L LG N V EL+ Q+++++ V S R +++A + T Sbjct: 241 AQDMLNRALGAGNAVVKVSTELDFSQQEVKDVKL--GKPVPLSTRETEEAGQGSTG---- 294 Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEIN-----TKSIATTHDNYKLERLSI 359 P S +P ++ N +++ +N T++ T L+RLS+ Sbjct: 295 -----SGTPGTS-ANIPTQQATNNNTSSYSKTDSIVNNEIPKTETHTVTPPGSSLKRLSV 348 Query: 360 AVVVNK 365 +V+VN+ Sbjct: 349 SVMVNR 354 >gi|57506034|ref|ZP_00371957.1| flagellar M-ring protein FliF [Campylobacter upsaliensis RM3195] gi|57015642|gb|EAL52433.1| flagellar M-ring protein FliF [Campylobacter upsaliensis RM3195] Length = 560 Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 113/438 (25%), Positives = 201/438 (45%), Gaps = 43/438 (9%) Query: 41 FFVNSPHYDNLYVKL----EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIH 96 F N P N YV L S I L + + +R+ +N S+I VP V + ++ Sbjct: 41 LFRNGPAGSNGYVPLIENANPSTAGAIVTRLEQNGVPYRL-ENESTILVPQDQVNRQKMF 99 Query: 97 LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHI 156 +A++GL + G+E+FDK FG TS +++ RAL+GEIAR I+++ I +A V + Sbjct: 100 IASEGL-IKDNRVGFEVFDK-QIFGATSAEEKVRAQRALQGEIARIIETLEPIRSASVIL 157 Query: 157 VMPDMGSFRKIGARPTASVMIRAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTG 214 +P F + PTASV I + K + ++++VAA+VP L +V + D G Sbjct: 158 ALPKESVFTERQIPPTASVTINIKDGFRLTRKQIDGVKNIVAASVPRLTKENVKISDQNG 217 Query: 215 KLLTANEMERN-ILGKSLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQ 272 L ++E +L + + + E+E I +LA F G D + +V E + Q+ Sbjct: 218 NTLDEQQLESGEVLAMQIRYKRDSERELEEKIINSLAPFAGGRDKLQVSVNIEYDFSKQE 277 Query: 273 IREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT--- 329 + +YDP++ V L++ +++ PE Q +P P+ L N Sbjct: 278 SKSEIYDPNTVVRSEQTLNE--EKTGRKDPEI-----QGVPGAVSNIGPV-EGLANNGVI 329 Query: 330 ---DKKEEQSNYEINTKSIATTHDNYKLE-RLSIAVVVNKGRLTEVLGRSADQGKIDS-- 383 K + +N EI +K+I T ++ + R+S AV ++ G+ +V+ + G++ S Sbjct: 330 DSYKKNQVTTNNEI-SKTITNTQKSFGVPLRISAAVTID-GKYEDVVD---ENGEVKSEY 384 Query: 384 ------YLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437 L + IV N+ RGD++ + ++ F + V+ R Sbjct: 385 VPLPQAQLNGVESIVRNTINFNAARGDSVVVQNLPFYRESI----KVESKVKTFYGRFIE 440 Query: 438 TVINALVFLVGTLLVTFL 455 I + + + +L+ F Sbjct: 441 PFIPPVKYFIAAILLFFF 458 >gi|157959913|ref|YP_001499947.1| flagellar MS-ring protein [Shewanella pealeana ATCC 700345] gi|157844913|gb|ABV85412.1| flagellar M-ring protein FliF [Shewanella pealeana ATCC 700345] Length = 566 Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 125/492 (25%), Positives = 222/492 (45%), Gaps = 64/492 (13%) Query: 22 ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81 + I+A+ ++V +ML+ A++ Y LY E + ++I L I +RI N Sbjct: 44 LAIVAACVIV-LMLWSASQ------GYRPLYGNQEGVETSQIIEVLEAEGISYRIDANSG 96 Query: 82 SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 I V +G AR+ LAA+G+ + SG E + N G + FM++ +LEGE++R Sbjct: 97 LILVTEDKLGPARMLLAARGV-KAKVPSGMESLENSN-IGTSQFMEQAKYRYSLEGELSR 154 Query: 142 TIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRA-----INPSVYKSAEAIRHLV 195 TI ++ + ARVH+ +P F R+ PTASVM+ I P + E+I +LV Sbjct: 155 TIMALKAVKTARVHLAIPKKTLFIRQQPELPTASVMLELYAGSNIQP---EQIESIVNLV 211 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTAN-EMERNIL---GKSLSIVQAIQHEIEMNINKALAA 251 A +V + V V+D G L+++ + ++I + L Q ++ + + L Sbjct: 212 AGSVTGMTPDRVQVVDQEGNHLSSSISVNKDITQARDRQLKYTQELEQSLIDRASSMLLP 271 Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311 LG D+F V A +N + + + DP + V +K+ S + + A+ + Sbjct: 272 ILGRDHFEVQVAANVNFNQVEETKESLDPLAVV------TKENLTSNETNSDMALGI--- 322 Query: 312 MPHVSDRKVPLPRSLENTDKK----EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367 P + P + E+ ++ +E ++ T + +LE LS++V++NK Sbjct: 323 -PGALSNQPPAAEADESNARRNLNSQESRQFDTGRSVRHTRYQQMQLENLSVSVLINKQS 381 Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL-------FN 420 E G + L +++ +V A G ++ RGD +I S DF Q+ + Sbjct: 382 AGET-------GWTQTQLDQLSSMVQDAIGFSAARGDQFSINSFDFAPTQIAEFEPMPWW 434 Query: 421 SGTVQVSFMDILSRHF--ATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 G +++ R+F A + A++F V LV L L +ID+ + + Sbjct: 435 QGESYQTYL----RYFIGALLGLAMIFFVLRPLVKHLTKTVEHNLKSIDEPAQPSL---- 486 Query: 479 ILSPPPISSAVT 490 PP + VT Sbjct: 487 ----PPAQATVT 494 >gi|315638805|ref|ZP_07893977.1| flagellar M-ring protein FliF [Campylobacter upsaliensis JV21] gi|315481023|gb|EFU71655.1| flagellar M-ring protein FliF [Campylobacter upsaliensis JV21] Length = 564 Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 113/438 (25%), Positives = 201/438 (45%), Gaps = 43/438 (9%) Query: 41 FFVNSPHYDNLYVKL----EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIH 96 F N P N YV L S I L + + +R+ +N S+I VP V + ++ Sbjct: 45 LFRNGPAGSNGYVPLIENANPSTAGAIVTRLEQNGVPYRL-ENESTILVPQDQVNRQKMF 103 Query: 97 LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHI 156 +A++GL + G+E+FDK FG TS +++ RAL+GEIAR I+++ I +A V + Sbjct: 104 IASEGL-IKDNRVGFEVFDK-QIFGATSAEEKVRAQRALQGEIARIIETLEPIRSASVIL 161 Query: 157 VMPDMGSFRKIGARPTASVMIRAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTG 214 +P F + PTASV I + K + ++++VAA+VP L +V + D G Sbjct: 162 ALPKESVFTERQIPPTASVTINIKDGFRLTRKQIDGVKNIVAASVPRLTKENVKISDQNG 221 Query: 215 KLLTANEMERN-ILGKSLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQ 272 L ++E +L + + + E+E I +LA F G D + +V E + Q+ Sbjct: 222 NTLDEQQLESGEVLAMQIRYKRDSERELEEKIINSLAPFAGGRDKLQVSVNIEYDFSKQE 281 Query: 273 IREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT--- 329 + +YDP++ V L++ +++ PE Q +P P+ L N Sbjct: 282 SKSEIYDPNTVVRSEQTLNE--EKTGRKDPEI-----QGVPGAVSNIGPV-EGLANNGVI 333 Query: 330 ---DKKEEQSNYEINTKSIATTHDNYKLE-RLSIAVVVNKGRLTEVLGRSADQGKIDS-- 383 K + +N EI +K+I T ++ + R+S AV ++ G+ +V+ + G++ S Sbjct: 334 DSYKKNQVTTNNEI-SKTITNTQKSFGVPLRISAAVTID-GKYEDVVD---ENGEVKSEY 388 Query: 384 ------YLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437 L + IV N+ RGD++ + ++ F + V+ R Sbjct: 389 VPLPQAQLNGVESIVRNTINFNAARGDSVVVQNLPFYRESI----KVESKVKTFYGRFIE 444 Query: 438 TVINALVFLVGTLLVTFL 455 I + + + +L+ F Sbjct: 445 PFIPPVKYFIAAILLFFF 462 >gi|254478876|ref|ZP_05092240.1| flagellar M-ring protein FliF [Carboxydibrachium pacificum DSM 12653] gi|214035189|gb|EEB75899.1| flagellar M-ring protein FliF [Carboxydibrachium pacificum DSM 12653] Length = 506 Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 125/469 (26%), Positives = 214/469 (45%), Gaps = 52/469 (11%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 +QLL F+ + ++ ++A ++ + I L + + N P+Y LY L + D + Sbjct: 10 EQLLNFWNKFDKKQKIQLTVIAILVFISISLLV---YIANRPNYVVLYSNLSLKDAGIVV 66 Query: 65 VAL-SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV-NSFGL 122 L SE + +++SDNG++I VP+ + R+ LA +G+P G+ D + NS Sbjct: 67 EKLKSEFKVPYKLSDNGTTILVPAQYKDEIRMKLATEGIPQ----GGFSFQDAMNNSLST 122 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMIR-- 178 T + + ++ EI ++++I G+ A V+IV+PD +F + TA+VM+ Sbjct: 123 TDQERRQKYLYFVQNEIQNSLKTIEGVQDAVVNIVVPDQNAFVLSNTTNQATAAVMLTLK 182 Query: 179 ---AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ 235 + PS K I V+ +V L +VTV+DSTGK+LT E + + ++ S Sbjct: 183 PGATLTPSQVK---GIIDFVSKSVEGLKPENVTVIDSTGKILTP---ESDSIAENASNQF 236 Query: 236 AIQHEIEMNINKALAAFL----GVDNFRSAVVAELNMDTQQIREIVYDP----DSK-VER 286 A+Q +++ ++ +L L G N LN D + I Y P D+K + R Sbjct: 237 ALQKKVQEDLQNSLQTLLEQVFGPGNVVVRANVRLNFDKKTEDRIEYTPVQGNDNKGIVR 296 Query: 287 SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346 S++ K+ ++ +Q S P + + DK E NYEIN Sbjct: 297 SVQELKE--KATGTQNGSPTGTASTTPPGGGALSTQSNNTSSYDKTETTINYEINQIKTT 354 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 K+E +S+AVVVNK L S Q +I +V+ A G N+ + + Sbjct: 355 LVEAQGKIESISVAVVVNKP-----LNASMQQ--------QIADLVANAAGGNNVK---V 398 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455 ++ + F ++ L + Q + + +I AL VG LV FL Sbjct: 399 SVQGIPFNQD-LLKAMQAQKKVAQGMPLYLWGIIAALA--VGGGLVAFL 444 >gi|157961189|ref|YP_001501223.1| flagellar MS-ring protein [Shewanella pealeana ATCC 700345] gi|157846189|gb|ABV86688.1| flagellar M-ring protein FliF [Shewanella pealeana ATCC 700345] Length = 566 Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 107/428 (25%), Positives = 199/428 (46%), Gaps = 32/428 (7%) Query: 14 GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73 G + R +ILA I + + +F+ + P Y L ++ +++ ++ AL + + Sbjct: 32 GVDMLRQLTMILALAICLAVAVFVM--IWAQEPEYRPLG-QMSTAEMVQVLDALDKNQVK 88 Query: 74 FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 + I G + VP ++ L+ +GL + +N+ + +K + FG++ M++ Sbjct: 89 YEI--QGDVVKVPEDKYQDVKMLLSREGLDNQEANNDF--LNKDSGFGVSQRMEQARLKH 144 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV-YKSAEAIR 192 + E +AR I+ + + A+V + +P F + ++P+A+V++ + + ++I Sbjct: 145 SQEQNLARVIEELKSVTRAKVILALPRENVFARNRSKPSATVVVSTRRSGLSQEEVDSIV 204 Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNINKALA 250 +VA+AV NL+ VTV D+ G+LL + + I + L IVQ + E + L Sbjct: 205 DIVASAVHNLEPNKVTVTDANGRLLNSGTQDGASAIARRELEIVQQKESEYRTKVESILM 264 Query: 251 AFLGVDNFRSAVVAELNMDTQQIREIV--YDPDSKVERSIRLSKDAQRSETS-------- 300 LG +NF S V +++MD + + Y+PD RS + ++ TS Sbjct: 265 PILGPENFTSQV--DVSMDFTAVEQTAKRYNPDLPALRSEMVVENNSAGGTSGGIPGALS 322 Query: 301 -QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 QP A + Q + V T KE N+E+NT T L R+S+ Sbjct: 323 NQPPMAADIPQEVNAEESLAVS-----SGTSHKEATRNFELNTTISHTRQQVGTLRRVSV 377 Query: 360 AVVVN--KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 +V V+ G ++E G + + LA I +++ A G N++RGD I + S+ F+ +Q Sbjct: 378 SVAVDFKNGPVSED-GSVNRVPRTEQELANIRRLLEGAVGFNTQRGDIIEVVSVPFM-DQ 435 Query: 418 LFNSGTVQ 425 L Q Sbjct: 436 LIEDAPPQ 443 >gi|328469325|gb|EGF40271.1| flagellar MS-ring protein [Vibrio parahaemolyticus 10329] Length = 571 Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 111/436 (25%), Positives = 199/436 (45%), Gaps = 40/436 (9%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +S + LY + E D+ I L + +R+ + + VP V + R+ LA++G Sbjct: 52 WSSSQSFRPLYSQQERFDIGEIVSVLESEGVSYRMQEQNGQVLVPEGEVARIRMLLASKG 111 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 + + +G + + +S G + FM+ LEGE+ RTI S++ + ARVH+ +P Sbjct: 112 V-KAKLPTGLDSLKEDSSLGTSQFMETARYRHGLEGELVRTIMSLNSVANARVHLAIPRQ 170 Query: 162 GSF-RKIGARPTASVMIRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F R+ G P+ASVM+ KS EAI +L+ +V + V+V+D G+LL+ Sbjct: 171 TLFVRQNGENPSASVMLELKPGEDLKSEQVEAIINLIVGSVTAMKPEFVSVIDQYGRLLS 230 Query: 219 AN---EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 A+ + K L + ++ +I L +G NFR V A +MD Q+ E Sbjct: 231 ADVASAEAGKVNAKYLEYQKNVEKQIIQRAADMLTPIVGPSNFRVQVAA--DMDFSQVEE 288 Query: 276 IVYDPDSKVERSIRLSKDAQRSE-TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEE 334 R I + R+E T Q S + +P + P+ D + Sbjct: 289 T---------REILDNAPVVRNEHTIQNNSIDQIALGVPGSLSNQPPVTGDAATNDSQNT 339 Query: 335 QSNYEINTKSIA------TTHDNYKLERLSIAVVVN-KGRLTEVLGRSADQGKIDSYLAE 387 + E+N + T + ++E+LS++V++N K V AD+ A+ Sbjct: 340 NARSEVNRQYAVGSSVRRTQYQQGQIEKLSVSVLLNSKASPDGVAWSDADK-------AQ 392 Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447 I+ +++ A GI++ RGD++++ S +F + ++ T + D TV L +++ Sbjct: 393 ISTMITDAVGISAARGDSLSLMSFNFTPIDI-DAPTALPWWQD------PTVQQPLRYVI 445 Query: 448 GTLLVTFLGLHALRRL 463 G +L + LR L Sbjct: 446 GGMLGLAMIFFVLRPL 461 >gi|330447943|ref|ZP_08311591.1| flagellar M-ring protein FliF [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492134|dbj|GAA06088.1| flagellar M-ring protein FliF [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 580 Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 107/387 (27%), Positives = 183/387 (47%), Gaps = 35/387 (9%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +S +Y LY + E D I L I +R+ + + V V K R+ LAA+G Sbjct: 62 WSSSQNYRPLYGQQERFDSGEIISVLETEGIPYRLQEANGQVLVAEGEVAKIRMLLAAKG 121 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 + + +G + + +S G + FM+ LEGE+ RTI ++ I ARVH+ +P Sbjct: 122 I-KAKLPTGLDSLKEDSSLGTSQFMETARYRHGLEGELVRTIIALDAIANARVHLAIPRK 180 Query: 162 GSFRKIGAR-PTASVMIRAINPS---VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + A PTASVM+ + P + EAI +LV +V + +V+V+D G+LL Sbjct: 181 TLFVRHNAEAPTASVMVE-LKPGEDLKTEQVEAIINLVTGSVTGMKTENVSVVDQYGRLL 239 Query: 218 TAN----EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQ 272 +A+ EM + + K L + ++ ++ L +G N+R V A+L+ Q+ Sbjct: 240 SADIGSTEMGK-VNAKYLDYQKNLEKQVIQRAADMLTPIVGPSNYRVQVAADLDFSHVQE 298 Query: 273 IREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332 +E+V S + K+ R E + S + +P K P+ EN D K Sbjct: 299 TKEVV--------DSAPVVKNEHRIENN---SIDNIALGVPGSLSNKPPVTGEEENKDSK 347 Query: 333 EEQSNYEINTK---SIATTHDNY---KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLA 386 EIN + + H Y KL +L+++V++N T SA ++ Sbjct: 348 NTNERTEINRQYALGSSVRHTQYQQGKLNKLNVSVLLNS---TAAPNGSA---WTEAETQ 401 Query: 387 EINKIVSAATGINSRRGDTITITSMDF 413 +I+ ++ A GI++ RGD+++I S +F Sbjct: 402 QISAMIKDAVGISADRGDSLSILSFNF 428 >gi|150019080|ref|YP_001311334.1| flagellar MS-ring protein [Clostridium beijerinckii NCIMB 8052] gi|149905545|gb|ABR36378.1| flagellar M-ring protein FliF [Clostridium beijerinckii NCIMB 8052] Length = 522 Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 116/445 (26%), Positives = 204/445 (45%), Gaps = 51/445 (11%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 F+ +S Y L+ L+ +D + +L+E +D +I N ++I VP V K R+ LA Sbjct: 42 FYSSSNKYQVLFSDLDAADAQTVVNSLNEKKVDTKIDSNTNTIWVPKDQVDKLRLELA-- 99 Query: 101 GLPSSSSNS-GYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 P+ +S S GYEL D +SFG+T +I +VR +GE+ +TI+S + ARVHI Sbjct: 100 --PTLTSGSKGYELMDSGSSFGMTDEEFKIKKVRMQQGELEKTIKSFPQVEEARVHITEA 157 Query: 160 DMGSFRKIGARPTASVMIRAINPSV--YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F K A+V ++ + ++I LV+ A N+ ++ V+D LL Sbjct: 158 KDSVFVKDKEPGKAAVYLKLKKGTTIGEDQVKSIVALVSGATENIPRENIDVIDDNMNLL 217 Query: 218 TAN---EMERNILGKSLSIVQAIQHEIEMNINKALAAFL----GVDNFRSAVVAELNMDT 270 T + + ++ +++S Q + E + KA+ + L G ++ V L+ D+ Sbjct: 218 TKDINSDKNNSVSSEAISKQQDAEKNYEDRMQKAIVSLLEPIVGKGKVKATVNVNLDFDS 277 Query: 271 QQIREIVYDPDSKVERSIRLSKDAQRS-ETSQPESAVTVEQNMPHVSDRKVPLPRSLENT 329 +Q + V DP+ KV S SK+ S T+ +S V + + P S Sbjct: 278 KQKTQTVVDPN-KVIVSQENSKETNNSGSTATSQSPVDNNMSNTTTATNNNPSASS---- 332 Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE-I 388 K+++++NYE+ +++RL+ +V+V+ G +D+ + + Sbjct: 333 -KEDQKTNYEVGKSESKVISAPGEVKRLTASVMVD--------------GNLDAATQQTL 377 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ---VSFMDILSRHFATV-INALV 444 V A G+++ RGD +++ M F T Q S +D ++ AT N ++ Sbjct: 378 ENAVGNAIGLDALRGDKVSVVGMAF-------DTTAQDQAKSEIDAMNAEAATAGKNKMM 430 Query: 445 FLVGTLLVTFLGLH----ALRRLHN 465 + G L LG+ A RR N Sbjct: 431 IVAGVLGALLLGMVIFFIARRRKKN 455 >gi|312884805|ref|ZP_07744497.1| flagellar MS-ring protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309367457|gb|EFP95017.1| flagellar MS-ring protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 582 Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 98/373 (26%), Positives = 178/373 (47%), Gaps = 25/373 (6%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110 LY + E D I L NI++R+ + + VP V + R+ LAA+G+ + G Sbjct: 73 LYSQQESFDTGDIISVLEAENINYRLQEQNGQVLVPEGEVARIRMLLAAKGV-KAKLPMG 131 Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGA 169 + + +S G + F++ LEGE+ RTI S++ + ARVH+ +P F R+ Sbjct: 132 LDSLQEDSSLGTSQFIETARYRHGLEGELIRTIISLNSVANARVHLAIPRQTLFVRQDRE 191 Query: 170 RPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA---NEME 223 P+ASVM+ + P + EAI +LV +V + V+V+D G+LL+A +E Sbjct: 192 APSASVMLE-LRPGEELNSEQVEAIVNLVVGSVTGMKPEQVSVVDQYGRLLSAEIGSEQA 250 Query: 224 RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK 283 + K L + ++ +I + L LG N+R V A++N + + + D Sbjct: 251 GKVNAKYLEYQKNVEKQIIQRASDMLTPILGPSNYRVQVSADMNFSQVEETQEILDATPV 310 Query: 284 VERSIRLSKDAQRSETSQPESAVTVE---QNMPHVSDRKVPLPRSLENTDKKEEQSNYEI 340 V++ ++ + S + A+ V N P V+ + P S + E Y + Sbjct: 311 VQKEHTITNN------SVDQIALGVPGTLSNQPPVTG-EAPTQDSQNTNARAEINRQYAV 363 Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400 + T + K+E+LS++V++N+ + L + D+ +I+ +++ A GI + Sbjct: 364 GSSVRRTQYQQGKVEKLSMSVLLNESAAPDGLAWTDDEKN------QISTMLADAVGITN 417 Query: 401 RRGDTITITSMDF 413 RGD+++I S F Sbjct: 418 DRGDSLSIMSFSF 430 >gi|297544710|ref|YP_003677012.1| flagellar M-ring protein FliF [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842485|gb|ADH61001.1| flagellar M-ring protein FliF [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 503 Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 113/424 (26%), Positives = 199/424 (46%), Gaps = 45/424 (10%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 +QL F+ + ++ ++A ++ + + L + + VN P+Y LY L + D + Sbjct: 10 EQLTNFWNKFDKKQKMQLGVIAILLFIGVSLLV---YIVNRPNYVVLYSDLSIKDAGVVV 66 Query: 65 VAL-SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN-SFGL 122 L +E + ++IS++G +I VP+ + R+ LA +G+P G+ D +N S Sbjct: 67 EKLKTEFKVPYKISNDGKTILVPAQYKDEVRMKLATEGIPEG----GFSFQDAMNNSLAT 122 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMIRAI 180 T + + L+ EI ++++I G+ A V+IV+PD +F + TA+VM+ + Sbjct: 123 TDQERRQKYLYFLQNEIQNSLKTIDGVQDAIVNIVVPDQNAFVLSNTTNQATAAVML-TL 181 Query: 181 NPSVYKSAEAIRHL---VAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQ 235 P V S+ ++ + V+ +V L +VTV+D+ GK+LTA ++ N ++ + Sbjct: 182 KPGVTLSSSQVKGIIDFVSKSVEGLKPENVTVIDNNGKILTAESDDTAEN-ANSQFALQK 240 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP----DSK-VERSIR- 289 +Q +++ N+ L G N LN D + I Y P D+K + RSI+ Sbjct: 241 KVQEDLQQNLQTLLEQVFGPGNVVVRANVTLNFDKKTEDRIEYLPVEGNDNKGIVRSIQE 300 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 L + A ++ P A T N P + + +K E NYEIN + Sbjct: 301 LKEKATGTQGGNP--AGTSSNNPPTTQTTG----SNTSDYNKTETTINYEINQIKTSLIE 354 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 K+E +S+AVVVNK L S Q +I +V+ A G +SR +++ Sbjct: 355 AQGKIESISVAVVVNKN-----LNNSMKQ--------QIADLVAKAAGGDSRV--QVSVQ 399 Query: 410 SMDF 413 M F Sbjct: 400 GMQF 403 >gi|289578434|ref|YP_003477061.1| flagellar M-ring protein FliF [Thermoanaerobacter italicus Ab9] gi|289528147|gb|ADD02499.1| flagellar M-ring protein FliF [Thermoanaerobacter italicus Ab9] Length = 503 Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 113/424 (26%), Positives = 199/424 (46%), Gaps = 45/424 (10%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 +QL F+ + ++ ++A ++ + + L + + VN P+Y LY L + D + Sbjct: 10 EQLTNFWNKFDKKQKMQLGVIAILLFIGVSLLV---YIVNRPNYVVLYSDLSIKDAGVVV 66 Query: 65 VAL-SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN-SFGL 122 L +E + ++IS++G +I VP+ + R+ LA +G+P G+ D +N S Sbjct: 67 EKLKTEFKVPYKISNDGKTILVPAQYKDEVRMKLATEGIPEG----GFSFQDAMNNSLAT 122 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMIRAI 180 T + + L+ EI ++++I G+ A V+IV+PD +F + TA+VM+ + Sbjct: 123 TDQERRQKYLYFLQNEIQNSLKTIDGVQDAIVNIVVPDQNAFVLSNTTNQATAAVML-TL 181 Query: 181 NPSVYKSAEAIRHL---VAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQ 235 P V S+ ++ + V+ +V L +VTV+D+ GK+LTA ++ N ++ + Sbjct: 182 KPGVTLSSSQVKGIIDFVSKSVEGLKPENVTVIDNNGKILTAESDDTAEN-ANSQFALQK 240 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP----DSK-VERSIR- 289 +Q +++ N+ L G N LN D + I Y P D+K + RSI+ Sbjct: 241 KVQEDLQQNLQTLLEQVFGPGNVVVRANVTLNFDKKTEDRIEYLPVEGNDNKGIVRSIQE 300 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 L + A ++ P A T N P + + +K E NYEIN + Sbjct: 301 LKEKATGTQGGNP--AGTSSNNPPTTQTTG----SNTSDYNKTETTINYEINQIKTSLIE 354 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 K+E +S+AVVVNK L S Q +I +V+ A G +SR +++ Sbjct: 355 AQGKIESISVAVVVNKN-----LNNSMKQ--------QIADLVAKAAGGDSRV--QVSVQ 399 Query: 410 SMDF 413 M F Sbjct: 400 GMQF 403 >gi|253682590|ref|ZP_04863387.1| flagellar M-ring protein FliF [Clostridium botulinum D str. 1873] gi|253562302|gb|EES91754.1| flagellar M-ring protein FliF [Clostridium botulinum D str. 1873] Length = 524 Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 114/425 (26%), Positives = 204/425 (48%), Gaps = 36/425 (8%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 I +Q + F+ L + + + + ++L I+ + +N+ Y LY ++ +D Sbjct: 4 IKEQFRKLFEKFKELSKIKKIAFSILVLGIIIGIVYLVISLNTTKYAVLYKDMDPNDAQT 63 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + L++ +++++ +N SI VP + R+ LA Q +S + GYE+ D ++FG+ Sbjct: 64 VMAKLADKKLEYKVENN--SIKVPEDKAAELRMELAPQ---LTSGSKGYEILDDGDTFGM 118 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-AIN 181 T +E+ RALEGE+AR I+S+ + A+V +VM G+F K +ASV + Sbjct: 119 TDKERELKYKRALEGELARDIKSLPEVKEAKVLLVMQQEGNFFKQEDPGSASVTLEFETG 178 Query: 182 PSVYKSA-EAIRHLVAAAVPNLDMGDVTVLD-STGKLLTANE-MERNILGKSLSIVQAIQ 238 V K +AI LV+ +V NL ++ V+ GK +E + + K +S V Q Sbjct: 179 KKVTKEQIKAIVALVSGSVKNLPKENIKVVGVVNGKTQDLSEDLFKEDGNKDISSVTEKQ 238 Query: 239 HEIEMNINKA-LAAFLGV------DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + N+ K + + V + ++AV ++N D + ++DP++ V RS Sbjct: 239 ENYKKNLEKEYVKKIMNVLTPKYGEGVKAAVNVDVNFDASEKTSTLWDPNNVV-RSEETE 297 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSL-ENTDKKEEQSNYEINTKSIATTHD 350 KD + S+ S+ SA V+ NM + + K S E T K NYE+ Sbjct: 298 KDTENSKGSKT-SASPVDNNMSNTYNSKDENGTSTHEKTTK-----NYEVGKIEQKVVGA 351 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 K++++S +V +N L+ V D+ KI+S +V+ A + RGD +++ Sbjct: 352 PGKIKKISASVTINDENLSPV-----DKDKINS-------LVAGAISYDESRGDIVSVEG 399 Query: 411 MDFLE 415 M F E Sbjct: 400 MKFNE 404 >gi|224438214|ref|ZP_03659149.1| flagellar MS-ring protein [Helicobacter cinaedi CCUG 18818] gi|313144660|ref|ZP_07806853.1| flagellar basal body M-ring protein FliF [Helicobacter cinaedi CCUG 18818] gi|313129691|gb|EFR47308.1| flagellar basal body M-ring protein FliF [Helicobacter cinaedi CCUG 18818] Length = 569 Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 116/457 (25%), Positives = 213/457 (46%), Gaps = 34/457 (7%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVSDVNRISVALSEANIDF 74 + RI+IL + +++ L F V + + YD L+ L D I L + I + Sbjct: 20 KQRIIILTTFVVIIAFLTYLVLFRVETKNEYENYDVLFSNLNPEDSAAILQRLQQDKIPY 79 Query: 75 RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134 +I + + I VP V + RI L + GLP +S N G+++ + N+ G T F Q++ + A Sbjct: 80 KIPQD-NIILVPKDKVYEQRISLGSLGLPKTSKNVGFDILLE-NNVGETPFTQDMKYLVA 137 Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AI 191 + E+ARTI+S+ I A V+I MP F + G P+ASV I + +++ S E I Sbjct: 138 KQNELARTIESLKPIEKAIVNISMPKESLFVQGGHPPSASVKI-TVQDNMFLSIEQVVGI 196 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIEMNINKAL 249 +HLVAAAV L +V +++ G+LL ++ +++ LGK + + Q E + + Sbjct: 197 KHLVAAAVERLTPQNVKIINQDGELLGEDDEATQQSALGKQAAFQRKYQQNAENAMEAKI 256 Query: 250 AAFLGV---DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306 FL D + V + + ++ V+ + V + K+ + Q Sbjct: 257 VKFLKPSVGDGVEAQVTMDFDFSVRKSVAEVFGQNPVVRGTREYEKERKGFRPPQIGGVP 316 Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK-LERLSIAVVVNK 365 V N+ V K +E + E N EI+ K+++ +++ L+R+S +V+++ Sbjct: 317 GVVSNIGPVQGLKD--DEMMEWEKESEVVINNEID-KTVSDIKEHFGVLKRVSASVMID- 372 Query: 366 GRLTEVLGRSAD---------QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 G E +G + Q ++D +L + K A G N RGD + + +M F + Sbjct: 373 GTYKEAVGEDGEPRLEYIPRSQEEMDKFLEGVKK----AIGYNEARGDQVEVINMQFRNS 428 Query: 417 QL-FNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452 L + F D + R+ + L +++ +++ Sbjct: 429 LLDYRPKDSWELFSDKVERYLGPFMPLLKYVIVAVII 465 >gi|153836097|ref|ZP_01988764.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AQ3810] gi|260362945|ref|ZP_05775814.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus K5030] gi|260880232|ref|ZP_05892587.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AN-5034] gi|260895349|ref|ZP_05903845.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus Peru-466] gi|149750851|gb|EDM61596.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AQ3810] gi|308085629|gb|EFO35324.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus Peru-466] gi|308092563|gb|EFO42258.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AN-5034] gi|308112147|gb|EFO49687.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus K5030] Length = 571 Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 110/437 (25%), Positives = 200/437 (45%), Gaps = 42/437 (9%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +S + LY + E D+ I L + +R+ + + VP V + R+ LA++G Sbjct: 52 WSSSQSFRPLYSQQERFDIGEIVSVLESEGVSYRMQEQNGQVLVPEGEVARIRMLLASKG 111 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 + + +G + + +S G + FM+ LEGE+ RTI S++ + ARVH+ +P Sbjct: 112 V-KAKLPTGLDSLKEDSSLGTSQFMETARYRHGLEGELVRTIMSLNSVANARVHLAIPRQ 170 Query: 162 GSF-RKIGARPTASVMIRAINPS---VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F R+ G P+ASVM+ + P + EAI +L+ +V + V+V+D G+LL Sbjct: 171 TLFVRQNGENPSASVMLE-LKPGEDLKPEQVEAIINLIVGSVTAMKPEFVSVIDQYGRLL 229 Query: 218 TAN---EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 +A+ + K L + ++ +I L +G NFR V A +MD Q+ Sbjct: 230 SADVASAEAGKVNAKYLEYQKNVEKQIIQRAADMLTPIVGPSNFRVQVAA--DMDFSQVE 287 Query: 275 EIVYDPDSKVERSIRLSKDAQRSE-TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKE 333 E R I + R+E T Q S + +P + P+ D + Sbjct: 288 ET---------REILDNAPVVRNEHTIQNNSIDQIALGVPGSLSNQPPVTGEAATNDSQN 338 Query: 334 EQSNYEINTKSIA------TTHDNYKLERLSIAVVVN-KGRLTEVLGRSADQGKIDSYLA 386 + E+N + T + ++E+LS++V++N K V AD+ A Sbjct: 339 TNARSEVNRQYAVGSSVRRTQYQQGQIEKLSVSVLLNSKASPDGVAWSDADK-------A 391 Query: 387 EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFL 446 +I+ +++ A GI++ RGD++++ S +F + ++ T + D TV L ++ Sbjct: 392 QISTMITDAVGISAARGDSLSLMSFNFTPIDI-DAPTALPWWQD------PTVQQPLRYV 444 Query: 447 VGTLLVTFLGLHALRRL 463 +G +L + LR L Sbjct: 445 IGGMLGLAMIFFVLRPL 461 >gi|260752868|ref|YP_003225761.1| flagellar M-ring protein FliF [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552231|gb|ACV75177.1| flagellar M-ring protein FliF [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 619 Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 122/465 (26%), Positives = 210/465 (45%), Gaps = 72/465 (15%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 F +++P +LY +D I+ AL I + I+ I+V KAR+ LA Q Sbjct: 71 FLLSAPPQRDLYPGAGDADRASIASALETGGIHYNINRGNGVITVSEKDYYKARMLLAQQ 130 Query: 101 GLPSSSSNSGYELFDKVNSFGL-TSFMQEITRVRAL-EGEIARTIQSISGIVAARVHIVM 158 GLP S+ + + ++S L S E R+RA E ++ARTI++I + ARVHI Sbjct: 131 GLPKSAPDGDH----VISSLPLGASRAVEGERLRAAREVDLARTIETIDVVNQARVHIAE 186 Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 P F + TASVM++ + +A +AI++LVAA+VP + V+V+D G L Sbjct: 187 PQPSPFVREQVHGTASVMLKLMTGRNLSNAQVQAIQNLVAASVPGMAPEAVSVVDQAGHL 246 Query: 217 LTA-NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM-DTQQIR 274 L+A + + +I + L + Q ++ +NK L LG +N+ + V +L+ ++Q R Sbjct: 247 LSATSNADNDINDRQLRLQQTVEARYMDALNKLLVPLLGENNYTAEVHTDLDFTESQATR 306 Query: 275 EIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRS--------- 325 E S S +KD + A++ NMP P P + Sbjct: 307 ESYPKEGSLRSESGSWNKDGGPDQNGGIPGAMS---NMP-------PTPANPTQNPPPNL 356 Query: 326 -----------------------LENTDKKEEQSN--------YEINTKSIATTHDN--- 351 N ++ N E ++ A T +N Sbjct: 357 QPPAQPNNQQNAQNGQQGQNAQGQPNGQNAQQGQNARAPGSVPAETAQQAQARTSENFNR 416 Query: 352 -YKLERLSIAVVVNK----GRLTEVLG-RSADQGKIDS--YLAEINKIVSAATGINSRRG 403 Y+L R ++V+ N R+T + R + GK S +A++ K++ A G ++ RG Sbjct: 417 YYELGR-EVSVIRNPTGSVKRVTVAIALRQINHGKPPSPEQVAQLEKLIKGAIGFDASRG 475 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 D + I+S DF+ +F+ Q S++ +L+R+ + ++ A + + G Sbjct: 476 DVVAISSSDFMGGSVFSMPWYQNSWVPLLARNLSALLVAALVIFG 520 >gi|126462456|ref|YP_001043570.1| flagellar M-ring protein FliF [Rhodobacter sphaeroides ATCC 17029] gi|126104120|gb|ABN76798.1| flagellar M-ring protein FliF [Rhodobacter sphaeroides ATCC 17029] Length = 570 Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 94/313 (30%), Positives = 152/313 (48%), Gaps = 26/313 (8%) Query: 2 AILDQLLQFF-KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 +LDQ+ +F + G ILILA +L +A + P LY L ++ Sbjct: 23 GMLDQIRRFGDQPGLRRAMPAILILAVTVLA-----LAGWILLREPARVTLYPGLPEAEK 77 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 R+ +L+ I I + ++VP + +AR+ LAAQGLP + L D Sbjct: 78 ARVIDSLTGGGIAAVIDERTGEVAVPGADYHRARMLLAAQGLPQGLPDGNALLSDL--PM 135 Query: 121 GLTSFMQEITRVR-ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 G TS E R+R A E ++AR+I IS + AARVH+ +P+ +F + P ASV ++ Sbjct: 136 G-TSKSVETARLRQAQELDLARSITEISAVSAARVHLALPERSAFLRESQPPRASVFLQI 194 Query: 180 INPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI 237 + A EAI +LV+++VP + DVTV+D G+LL+ + +L + + Sbjct: 195 VPGRTLDGAQVEAIVNLVSSSVPGMARQDVTVVDQMGRLLSRGSDDPAVLLND----RQL 250 Query: 238 QHEIEMN------INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 QH +++ I L G N V +++ Q+IRE DPD R+ L+ Sbjct: 251 QHRVQLETLYRNRIESLLTPIAGPGNLAVQVTIDMDFTRQEIREEQVDPD----RTALLA 306 Query: 292 KDAQRSETSQPES 304 + +Q ET+ P++ Sbjct: 307 EQSQIEETADPQA 319 >gi|260901174|ref|ZP_05909569.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AQ4037] gi|308109395|gb|EFO46935.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AQ4037] Length = 571 Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 110/437 (25%), Positives = 200/437 (45%), Gaps = 42/437 (9%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +S + LY + E D+ I L + +R+ + + VP V + R+ LA++G Sbjct: 52 WSSSQSFRPLYSQQERFDIGEIVSVLESEGVSYRMQEQNGQVLVPEGEVARIRMLLASKG 111 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 + + +G + + +S G + FM+ LEGE+ RTI S++ + ARVH+ +P Sbjct: 112 V-KAKLPTGLDSLKEDSSLGTSQFMETARYRHGLEGELVRTIMSLNSVANARVHLAIPRQ 170 Query: 162 GSF-RKIGARPTASVMIRAINPS---VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F R+ G P+ASVM+ + P + EAI +L+ +V + V+V+D G+LL Sbjct: 171 TLFVRQNGETPSASVMLE-LKPGEDLKPEQVEAIINLIVGSVTAMKPEFVSVIDQYGRLL 229 Query: 218 TANEMER---NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 +A+ + K L + ++ +I L +G NFR V A +MD Q+ Sbjct: 230 SADVASAEAGKVNAKYLEYQKNVEKQIIQRAADMLTPIVGPSNFRVQVAA--DMDFSQVE 287 Query: 275 EIVYDPDSKVERSIRLSKDAQRSE-TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKE 333 E R I + R+E T Q S + +P + P+ D + Sbjct: 288 ET---------REILDNAPVVRNEHTIQNNSIDQIALGVPGSLSNQPPVTGDAATNDSQN 338 Query: 334 EQSNYEINTKSIA------TTHDNYKLERLSIAVVVN-KGRLTEVLGRSADQGKIDSYLA 386 + E+N + T + ++E+LS++V++N K V AD+ A Sbjct: 339 TNARSEVNRQYAVGSSVRRTQYQQGQIEKLSVSVLLNSKASPDGVAWSDADK-------A 391 Query: 387 EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFL 446 +I+ +++ A GI++ RGD++++ S +F + ++ T + D TV L ++ Sbjct: 392 QISTMITDAVGISAARGDSLSLMSFNFTPIDI-DAPTALPWWQD------PTVQQPLRYV 444 Query: 447 VGTLLVTFLGLHALRRL 463 +G +L + LR L Sbjct: 445 IGGMLGLAMIFFVLRPL 461 >gi|167037669|ref|YP_001665247.1| flagellar M-ring protein FliF [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116084|ref|YP_004186243.1| flagellar M-ring protein FliF [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856503|gb|ABY94911.1| flagellar M-ring protein FliF [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929175|gb|ADV79860.1| flagellar M-ring protein FliF [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 503 Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 105/378 (27%), Positives = 185/378 (48%), Gaps = 34/378 (8%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 +QL F+ + ++ I+A ++ + I L + + VN P+Y LY L + D + Sbjct: 10 EQLTNFWNKFDKKQKIQLGIIAILLFIGISLLV---YIVNRPNYVVLYSDLSIKDAGAVV 66 Query: 65 VAL-SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV-NSFGL 122 L +E I ++IS++G++I VP+ + R+ LA +G+P G+ D + NS Sbjct: 67 EKLKTEFKIPYKISNDGTTILVPAQYKDEVRMKLATEGIPQ----GGFSFQDAMNNSLAT 122 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMIRAI 180 T + + L+ EI ++++I G+ A V+IV+PD +F + TA+VM+ + Sbjct: 123 TDQERRQKYLYFLQNEIQNSLKTIDGVQDAIVNIVVPDQNAFVLSNTTNQATAAVML-TL 181 Query: 181 NPSVYKSAEAIRHL---VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI 237 P V S+ ++ + V+ +V L +VTV+D+ GK+LTA E + ++ + A+ Sbjct: 182 KPGVTLSSSQVKGIIDFVSKSVEGLKPENVTVIDNNGKILTA---ESDTTAENANTQFAL 238 Query: 238 QHEIEMNINKALAAFL----GVDNFRSAVVAELNMDTQQIREIVYDP----DSK-VERSI 288 Q +++ ++ +L L G N LN D + I Y P D+K + RSI Sbjct: 239 QKKVQEDLQNSLQTLLEQVFGPGNVVVRANVTLNFDKKTQDTIEYLPVQGNDNKGIVRSI 298 Query: 289 R-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 + L + A ++ P A T N P +S + ++ E NYEIN + Sbjct: 299 QELKEKATGTQGGSP--AGTATNNPPVISTTG----NGTSDYNRTEITINYEINQIKTSL 352 Query: 348 THDNYKLERLSIAVVVNK 365 K+E +SIAVV+N+ Sbjct: 353 VQAQGKIENISIAVVINQ 370 >gi|147678424|ref|YP_001212639.1| flagellar MS-ring protein [Pelotomaculum thermopropionicum SI] gi|146274521|dbj|BAF60270.1| flagellar biosynthesis/type III secretory pathway lipoprotein [Pelotomaculum thermopropionicum SI] Length = 506 Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 125/470 (26%), Positives = 215/470 (45%), Gaps = 50/470 (10%) Query: 9 QFFKSGTSLGRTRILI---LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 +F + SL +T+ +I +AS LV LF + P Y L+ LE D I Sbjct: 9 RFRERWQSLSQTQKVISVLVASGALV--CLFYLGQL-ATRPAYAPLFTGLEPKDAGVIVD 65 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L I ++I+D G +I VP V + RI LA+ G G+ELFD+ + G T F Sbjct: 66 ELKALKIPYQIADEGKTIKVPEDKVYEVRIQLASSGA-LGGGGMGFELFDQ-SKLGQTDF 123 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR--PTASVMIRAINPS 183 Q++ RAL+ E+ RTI + G+ ARVH+V+P F IG R P+A+V ++ + P+ Sbjct: 124 EQQVGYQRALQEELRRTIVQLEGVEQARVHLVIPQKSVF--IGERGTPSAAVALK-LKPA 180 Query: 184 VY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQH- 239 + + I L+ +V L +V ++D+ G +L+ ++++ ++ A++H Sbjct: 181 ARLKPEQVQGICDLLVGSVEGLKPENVHIIDTEGNVLS-DDLKSGEW--AVGTKTALEHQ 237 Query: 240 --------EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 E+E + + L +G + + V A+L+ + QQ V S ++R+S Sbjct: 238 KARREYEKELEKRVQQMLTQIMGQNKAVAMVTADLDFNQQQTTSTV----SSNPNNLRIS 293 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + R E+ + ++S N ++E NY++NT Sbjct: 294 EHIVRETGGGTEAGGPPGTD-SNLSTYPALQGAGTTNYSREESTINYQVNTVQETVVKAP 352 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 + RLS +VV+N+ G +D + ++ +V+AA G + RGD I ++SM Sbjct: 353 GTVRRLSASVVLNE-----------TDGPVD--VQKVRDVVAAAIGYDQARGDQINVSSM 399 Query: 412 DFLENQLFNSGTVQVSFMDILSR-HFATVINALVFLVGTLLVTFLGLHAL 460 F ++ L V+ + SR F + G LL+ L + AL Sbjct: 400 AFDDSYL---KKVEAEMAEAESRARFKERLYLYALSGGALLLVVLSILAL 446 >gi|269796398|ref|YP_003315853.1| flagellar basal-body M-ring protein/flagellar hook-basal body protein FliF [Sanguibacter keddieii DSM 10542] gi|269098583|gb|ACZ23019.1| flagellar basal-body M-ring protein/flagellar hook-basal body protein FliF [Sanguibacter keddieii DSM 10542] Length = 530 Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 103/385 (26%), Positives = 178/385 (46%), Gaps = 43/385 (11%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + + P + LY L +D + I L+ + +++++ GS++ VP+ V R+ +AA Sbjct: 43 MWFSRPQFSPLYTDLAPADASAIVDQLTAQGVKYQLTNGGSTVLVPTESVYDMRLKVAAS 102 Query: 101 GLPSSSSNSGYELFDKVNSFGLTS--FMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 G+ S S++ GY L D G+TS F Q++T RALEGE+ +T+ S+ G+ A V + M Sbjct: 103 GM-SPSADGGYSLLDD---MGMTSSEFQQDVTYKRALEGEMGKTVSSMQGVELATVKLAM 158 Query: 159 PDMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 P F PTASV ++ + ++I +LV+A+V + DV V+DS+G + Sbjct: 159 PAESVFVDQATDPTASVFVKTRSGVTLTDDQVQSIVNLVSASVEGMKATDVAVIDSSGAV 218 Query: 217 LTANEMERNILGKSLSIVQAIQHE--IEMNINKALAAFLGVDNFRSAVVAELNMD-TQQI 273 L+A L S Q +++E + +I L +GV V A+L+ D T++ Sbjct: 219 LSAV---GTGLAGSGGNKQTVEYEQRVAQSIQAMLEPIVGVGKAVVTVTADLDYDATERT 275 Query: 274 REIVYDPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDRKVPLPRSLENTD 330 +E S E + L++ E P + V N+ +VP N Sbjct: 276 QESF----SSAEGVLPLTERTTTEEFAGGGNPATGVLGPDNI------QVP------NGT 319 Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG--RLTEVLGRSADQGKIDSYLAEI 388 +N T+ N +++L+ V G R V +A++ Sbjct: 320 ADGSYTN--------ETSEANNAVDKLTEHTVTAPGTVRRQSVAVAVDAAAAAAVDMAQL 371 Query: 389 NKIVSAATGINSRRGDTITITSMDF 413 +VS+A+G + RGD +T++ M F Sbjct: 372 QAMVSSASGFDEARGDVVTVSQMPF 396 >gi|28901391|ref|NP_801046.1| flagellar MS-ring protein [Vibrio parahaemolyticus RIMD 2210633] gi|28809938|dbj|BAC62879.1| putative flagellar M-ring protein [Vibrio parahaemolyticus RIMD 2210633] Length = 584 Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 108/436 (24%), Positives = 200/436 (45%), Gaps = 40/436 (9%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +S + LY + E D+ I L + +R+ + + VP V + R+ LA++G Sbjct: 65 WSSSQSFRPLYSQQERFDIGEIVSVLESEGVSYRMQEQNGQVLVPEGEVARIRMLLASKG 124 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 + + +G + + +S G + FM+ LEGE+ RTI S++ + ARVH+ +P Sbjct: 125 V-KAKLPTGLDSLKEDSSLGTSQFMETARYRHGLEGELVRTIMSLNSVANARVHLAIPRQ 183 Query: 162 GSF-RKIGARPTASVMIRAINPS---VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F R+ G P+ASVM+ + P + EAI +L+ +V + V+V+D G+LL Sbjct: 184 TLFVRQNGENPSASVMLE-LKPGEDLKPEQVEAIINLIVGSVTAMKPEFVSVIDQYGRLL 242 Query: 218 TANEMER---NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 +A+ + K L + ++ +I L +G NFR V A +MD Q+ Sbjct: 243 SADVASAEAGKVNAKYLEYQKNVEKQIIQRAADMLTPIVGPSNFRVQVAA--DMDFSQVE 300 Query: 275 EIVYDPDSKVERSIRLSKDAQRSE-TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKE 333 E R I + R+E T Q S + +P + P+ D + Sbjct: 301 ET---------REILDNAPVVRNEHTIQNNSIDQIALGVPGSLSNQPPVTGEAATNDSQN 351 Query: 334 EQSNYEINTKSIA------TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE 387 + E+N + T + ++E+LS++V++N + + S D+ A+ Sbjct: 352 TNARSEVNRQYAVGSSVRRTQYQQGQIEKLSVSVLLNSKASPDGVAWS------DADKAQ 405 Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447 I+ +++ A GI++ RGD++++ S +F + ++ T + D TV L +++ Sbjct: 406 ISTMITDAVGISAARGDSLSLMSFNFTPIDI-DAPTALPWWQD------PTVQQPLRYVI 458 Query: 448 GTLLVTFLGLHALRRL 463 G +L + LR L Sbjct: 459 GGMLGLAMIFFVLRPL 474 >gi|331269314|ref|YP_004395806.1| flagellar M-ring protein FliF [Clostridium botulinum BKT015925] gi|329125864|gb|AEB75809.1| flagellar M-ring protein FliF [Clostridium botulinum BKT015925] Length = 524 Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 114/423 (26%), Positives = 201/423 (47%), Gaps = 41/423 (9%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 +L++ FK + + + +L I+ I+ + + +N+ Y LY ++ +D + Sbjct: 10 KLVEKFKELSKIKKIAFSVLVLGIITGIIYLVIS---LNTTKYAVLYKDMDPNDAQTVMA 66 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L++ I++++ +N SI VP + R+ LA Q ++ + GYE+ D ++FG+T Sbjct: 67 KLADKKIEYKVENN--SIRVPEDKAAELRMELAPQ---LTNGSKGYEILDNGDTFGMTDK 121 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-AINPSV 184 +E+ RALEGE+AR I+S+ + A+V +VM G+F K +ASV + V Sbjct: 122 ERELKYKRALEGELARDIKSLPEVKDAKVLLVMQQEGNFFKQDDPGSASVTLEFETGKKV 181 Query: 185 YKSA-EAIRHLVAAAVPNLDMGDVTVLD-STGKLLTANE-MERNILGKSLSIVQAIQHEI 241 K +AI LV+ +V NL ++ V+ GK +E + + K +S V Q Sbjct: 182 TKEQIKAIVALVSGSVKNLPKENIKVVGVVNGKTQDLSEDLFKEDGNKDISSVTEKQESY 241 Query: 242 EMNINKA--------LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293 + N+ K L G D ++AV +++ D + ++DP++ V RS KD Sbjct: 242 KKNLEKEYVKKIMNILTPKYG-DGVKAAVNVDVDFDASEKTSTLWDPNNVV-RSEETEKD 299 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSL-ENTDKKEEQSNYEINTKSIATTHDNY 352 S+ + SA V+ NM + + K S E T K NYE+ Sbjct: 300 TDNSKGGKT-SAGPVDNNMSNTYNAKDQNGTSTHEKTTK-----NYEVGKVEQKVVGAPG 353 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 K++++S +V +N L+ V D+ KI+S +V+ A + RGD +++ M Sbjct: 354 KIKKISASVTINDENLSPV-----DKDKINS-------LVAGAISYDESRGDIVSVEGMK 401 Query: 413 FLE 415 F E Sbjct: 402 FNE 404 >gi|29423531|gb|AAO73593.1| lateral flagellar FliF-like M-ring protein [Vibrio parahaemolyticus] Length = 584 Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 110/437 (25%), Positives = 200/437 (45%), Gaps = 42/437 (9%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +S + LY + E D+ I L + +R+ + + VP V + R+ LA++G Sbjct: 65 WSSSQSFRPLYSQQERFDIGEIVSVLESEGVSYRMQEQNGQVLVPEGEVARIRMLLASKG 124 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 + + +G + + +S G + FM+ LEGE+ RTI S++ + ARVH+ +P Sbjct: 125 V-KAKLPTGLDSLKEDSSLGTSQFMETARYRHGLEGELVRTIMSLNSVANARVHLAIPRQ 183 Query: 162 GSF-RKIGARPTASVMIRAINPS---VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F R+ G P+ASVM+ + P + EAI +L+ +V + V+V+D G+LL Sbjct: 184 TLFVRQNGENPSASVMLE-LKPGEDLKPEQVEAIINLIVGSVTAMKPEFVSVIDQYGRLL 242 Query: 218 TAN---EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 +A+ + K L + ++ +I L +G NFR V A +MD Q+ Sbjct: 243 SADVASAEAGKVNAKYLEYQKNVEKQIIQRAADMLTPIVGPSNFRVQVAA--DMDFSQVE 300 Query: 275 EIVYDPDSKVERSIRLSKDAQRSE-TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKE 333 E R I + R+E T Q S + +P + P+ D + Sbjct: 301 ET---------REILDNAPVVRNEHTIQNNSIDQIALGVPGSLSNQPPVTGDAATNDSQN 351 Query: 334 EQSNYEINTKSIA------TTHDNYKLERLSIAVVVN-KGRLTEVLGRSADQGKIDSYLA 386 + E+N + T + ++E+LS++V++N K V AD+ A Sbjct: 352 TNARSEVNRQYAVGSSVRRTQYQQGQIEKLSVSVLLNSKASPDGVAWSDADK-------A 404 Query: 387 EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFL 446 +I+ +++ A GI++ RGD++++ S +F + ++ T + D TV L ++ Sbjct: 405 QISTMITDAVGISAARGDSLSLMSFNFTPIDI-DAPTALPWWQD------PTVQQPLRYV 457 Query: 447 VGTLLVTFLGLHALRRL 463 +G +L + LR L Sbjct: 458 IGGMLGLAMIFFVLRPL 474 >gi|68164520|gb|AAY87249.1| predicted flagellar basal-body M-ring protein [uncultured bacterium BAC17H8] Length = 573 Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 109/400 (27%), Positives = 191/400 (47%), Gaps = 43/400 (10%) Query: 41 FFVNS--PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 FFV S P LY L ++ R+ AL A +D + + + VP +R+ LA Sbjct: 56 FFVVSQQPERTTLYASLPEAEKARVVDALKNAGVDVVLDPSTGDVIVPVKDYHSSRMTLA 115 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 AQGLP+S + GY+ + G + ++ + ++ E E+AR+I I G+V ARVH+ + Sbjct: 116 AQGLPASIPD-GYDSLSDI-PMGSSRSVENVRLKQSQEIELARSISEIDGLVTARVHLAI 173 Query: 159 PDMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 P+ F + PTASV ++ N + +AI HLV+++VP + DVTV+D G L Sbjct: 174 PEKSVFARSATPPTASVFVQMENGRSLSRQQVDAIVHLVSSSVPFMAKNDVTVVDQYGNL 233 Query: 217 LTANEMERNILGKSLSIVQAIQHEIEMNINKALA---AFLGVDNFRSAVVAELNMDTQQI 273 L+ + + + I+ E E+ N+ +A +G N + V +++ ++ Sbjct: 234 LSRPPQDSAGMMSDAQLEHRIRLE-EIYRNRVIALVSPIVGAGNVTAQVNLDIDFTRSEV 292 Query: 274 REIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE------ 327 E V DP+ RS + S ++ SA + + +P + + P ++ Sbjct: 293 TEEVMDPEGTALRSEQSSSES---------SAEIIAKGVPGATSNRAPTQTDIDTQQNVD 343 Query: 328 ----NTDKKEEQS---NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380 N ++ QS NYE++ T + ++ + AV+V R EV+ +A+ G Sbjct: 344 SSDPNANRARSQSSTRNYEVSRTVSTTQRPSSQITGIQAAVLV---REMEVM--NAETGL 398 Query: 381 I------DSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 + + L EI +V+ A GI+ RGD +T++S F+ Sbjct: 399 MEVSEIPEEKLKEIEALVANAIGIDDGRGDRLTVSSSTFV 438 >gi|152965616|ref|YP_001361400.1| flagellar M-ring protein FliF [Kineococcus radiotolerans SRS30216] gi|151360133|gb|ABS03136.1| flagellar M-ring protein FliF [Kineococcus radiotolerans SRS30216] Length = 537 Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 99/378 (26%), Positives = 177/378 (46%), Gaps = 37/378 (9%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + ++P Y ++ L +D N + L + ++++DNG++I VP+ +V R+ ++ G Sbjct: 49 WASTPSYTPMFSNLSGADANAMVEKLDADGVPYQLADNGATILVPADVVDSERLAMSGAG 108 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP + + SGY L + + FMQ+ T + L+GE+ TI+SI G+ +A V++ +P Sbjct: 109 LP-ADTGSGYTLLTE-QKVTTSEFMQQKTYQKVLQGELESTIESIDGVESAVVNLAIPQK 166 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F TASV+++ + P S + +I +LV+ V +D +V+V+D G L+ Sbjct: 167 DVFLDEQDPTTASVLVK-LRPGKELSNDQVTSIVNLVSGGVEGMDPANVSVVDDKGNTLS 225 Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFL----GVDNFRSAVVAELNMDTQQIR 274 + G S Q + + + L FL G N ++ V A LN D + Sbjct: 226 TD-------GSGSSAQQEKTSDYNASASADLQTFLESVYGKGNVKATVKATLNYDDKTES 278 Query: 275 EIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRS-LENTD--- 330 Y +++ + +K + E + +A V + + +P EN Sbjct: 279 STTYSQPQEID-PLAEAKTEETYEGTTGAAATGV------LGPDNIAVPGGDAENGGGYA 331 Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINK 390 KK E +N IN T KLE+ +++VVVN G +Q I + Sbjct: 332 KKSETNNNAINKIDTVTKQAPGKLEKQTVSVVVNAGAKGAAGAADVNQ---------ITQ 382 Query: 391 IVSAATGINSRRGDTITI 408 IV+ A GI++ RGD++++ Sbjct: 383 IVNQAAGIDATRGDSVSV 400 >gi|167040330|ref|YP_001663315.1| flagellar M-ring protein FliF [Thermoanaerobacter sp. X514] gi|300914414|ref|ZP_07131730.1| flagellar M-ring protein FliF [Thermoanaerobacter sp. X561] gi|307724350|ref|YP_003904101.1| flagellar M-ring protein FliF [Thermoanaerobacter sp. X513] gi|166854570|gb|ABY92979.1| flagellar M-ring protein FliF [Thermoanaerobacter sp. X514] gi|300889349|gb|EFK84495.1| flagellar M-ring protein FliF [Thermoanaerobacter sp. X561] gi|307581411|gb|ADN54810.1| flagellar M-ring protein FliF [Thermoanaerobacter sp. X513] Length = 503 Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 101/374 (27%), Positives = 181/374 (48%), Gaps = 26/374 (6%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 +QL F+ + ++ I+A ++ + I L + + VN P+Y LY L + D + Sbjct: 10 EQLTNFWNKFDKKQKIQLGIIAILLFIGISLLV---YIVNRPNYVVLYSDLSIKDAGAVV 66 Query: 65 VAL-SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV-NSFGL 122 L +E I ++IS++G++I VP+ + R+ LA +G+P G+ D + NS Sbjct: 67 EKLKTEFKIPYKISNDGTTILVPAQYKDEVRMKLATEGIPQ----GGFSFQDAMNNSLAT 122 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMIRAI 180 T + + L+ EI ++++I G+ A V+IV+PD +F + TA+VM+ + Sbjct: 123 TDQERRQKYLYFLQNEIQNSLKTIDGVQDAIVNIVVPDQNAFVLSNTTNQATAAVML-TL 181 Query: 181 NPSVYKSAEAIRHL---VAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQA 236 P V S+ ++ + V+ +V L +VTV+D+ GK+LTA ++ ++ + Sbjct: 182 KPGVTLSSSQVKGIIDFVSKSVEGLKPENVTVIDNNGKILTAESDTTAENANTQFTLQKK 241 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP----DSK-VERSIRLS 291 +Q +++ ++ L G N LN D + I Y P D+K + RSI+ Sbjct: 242 VQEDLQNSLQTLLEQVFGPGNVVVRANVTLNFDKKTQDTIEYLPVQGNDNKGIVRSIQEL 301 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 K+ ++ +Q S+ N P V+ + + E NYEIN + Sbjct: 302 KE--KATGTQGGSSPGTASNNPPVASTT---GNGTSDYSRTETTINYEINQIKTSLVQAQ 356 Query: 352 YKLERLSIAVVVNK 365 K+E +SIAVVVN+ Sbjct: 357 GKIENISIAVVVNQ 370 >gi|163800134|ref|ZP_02194035.1| flagellar M-ring protein [Vibrio sp. AND4] gi|159175577|gb|EDP60371.1| flagellar M-ring protein [Vibrio sp. AND4] Length = 583 Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 109/430 (25%), Positives = 204/430 (47%), Gaps = 28/430 (6%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +S + LY + E D+ I L I +R+ + + VP V + R+ LA++G Sbjct: 65 WSSSQSFRPLYSQQERFDIGEIVSVLESEGISYRMQEQNGQVLVPEGEVARIRMLLASKG 124 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 + + +G + + +S G + FM+ LEGE+ RTI S++ I ARVH+ +P Sbjct: 125 V-KAKLPTGLDSLKEDSSLGTSQFMETARYRHGLEGELVRTIMSLNSIANARVHLAIPRQ 183 Query: 162 GSF-RKIGARPTASVMIRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F R+ P+ASVM+ KS EAI +LV +V + V+V+D G+LL+ Sbjct: 184 TLFVRQNTENPSASVMLELKPGEDLKSEQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLS 243 Query: 219 AN---EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDT-QQIR 274 A+ + K L ++++ +I L +G NFR V A++N ++ + Sbjct: 244 ADIASAEAGKVNAKYLEYQKSVEKQIIQRAADMLTPIVGPSNFRVQVAADMNFSQIEETQ 303 Query: 275 EIVYD-PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKE 333 EI+ + P + E +I+ + Q + P S N P V+ + P S + + E Sbjct: 304 EILDNAPVVRNEHTIQNNSIDQIA-LGIPGSL----SNQPPVTG-EAPTNDSQNSNARSE 357 Query: 334 EQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVS 393 Y + + T + ++E+LS++V++N + + S ++ ++I+ ++ Sbjct: 358 VNRQYAVGSSVRRTQYQQGQVEKLSVSVLLNSKVAPDGVAWS------EAEKSQISTMIM 411 Query: 394 AATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVT 453 A GI+ RGD++++ S +F + F++ + + D TV L +++G +L Sbjct: 412 DAAGISDARGDSLSLMSFNFTPIE-FDAPSAMPWWQD------PTVQQPLRYVIGGVLGL 464 Query: 454 FLGLHALRRL 463 + LR L Sbjct: 465 AMIFFVLRPL 474 >gi|328958284|ref|YP_004375670.1| flagellar M-ring protein [Carnobacterium sp. 17-4] gi|328674608|gb|AEB30654.1| flagellar M-ring protein [Carnobacterium sp. 17-4] Length = 524 Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 113/443 (25%), Positives = 214/443 (48%), Gaps = 43/443 (9%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 +LG+++ + L V++ + + + ++ Y L+ LE +D I + I ++ Sbjct: 17 NLGKSKQIGLVFVLIFVVSIVTSLTYYTQKVEYATLFSDLEEADAGTIVNDIKTKGIKYK 76 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQG-LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134 + D+G++I + + V RI LA LP S++ G+E+FD+ S T ++I RA Sbjct: 77 LEDDGTTILIDQAQVDTYRIELAVNDMLPKSTT--GFEIFDET-SMMATDEDRKIMYQRA 133 Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMIRAINPSV--YKSAEA 190 + GE+ R+I ++ I A+V + +P+ F + ++ +AS+++ I+ S + + Sbjct: 134 VTGELERSISALDSIEQAKVMLSLPEDSVFTSEENQSQASASIVLTPISGSQIPMSAVQG 193 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNI-----LGKSLSIVQAIQHEIEMN 244 I LV+ AV NL ++ ++D+ G LL TA E E N+ + K +I ++ + E+E Sbjct: 194 IASLVSGAVDNLPKENIKIVDTAGNLLSTALEDEGNLNATDLVSKYQAITKSYEQELEQK 253 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 + + L G+D AV A++N D+ + EI+ DS V RS +S + + E Sbjct: 254 LLQTLGPIYGMDKMTVAVNAKMNFDSNE-SEIINYGDSSV-RSEAVSAGGGTIDVEEGEG 311 Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 E ++ + + + T +NYE+N+++ T ++E+LS +V+ + Sbjct: 312 ---FENSINQIQSGEEGGNSTYNRT------TNYELNSETTNTIKAPGEVEKLSASVIFD 362 Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT- 423 G L ADQ +++ IV+ G R DTI+I +DF T Sbjct: 363 -GNL-----NPADQESLEA-------IVATTIGSVEER-DTISIQGIDFATTTDATDTTA 408 Query: 424 ---VQVSFMDILSRHFATVINAL 443 ++ S D L R++ ++ L Sbjct: 409 PEQLKSSIRDTLVRYWPYLVGGL 431 >gi|326389483|ref|ZP_08211050.1| flagellar M-ring protein FliF [Thermoanaerobacter ethanolicus JW 200] gi|325994488|gb|EGD52913.1| flagellar M-ring protein FliF [Thermoanaerobacter ethanolicus JW 200] Length = 506 Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 103/377 (27%), Positives = 184/377 (48%), Gaps = 32/377 (8%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 +QL F+ + ++ I+A ++ + I L + + VN P+Y LY L + D + Sbjct: 10 EQLTNFWNKFDKKQKIQLGIIAILLFIGISLLV---YIVNRPNYVVLYSDLSIKDAGAVV 66 Query: 65 VAL-SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV-NSFGL 122 L +E I ++IS++G++I VP+ + R+ LA +G+P G+ D + NS Sbjct: 67 EKLKTEFKIPYKISNDGTTILVPAQYKDEVRMKLATEGIPQ----GGFSFQDAMNNSLAT 122 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMIRAI 180 T + + L+ EI ++++I G+ A V+IV+PD +F + TA+VM+ + Sbjct: 123 TDQERRQKYLYFLQNEIQNSLKTIDGVQDAIVNIVVPDQNAFVLSNTTNQATAAVML-TL 181 Query: 181 NPSVYKSAEAIRHL---VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI 237 P V S+ ++ + V+ +V L +VTV+D+ GK+LTA E + ++ + A+ Sbjct: 182 KPGVTLSSSQVKGIIDFVSKSVEGLKPENVTVIDNNGKILTA---ESDTTAENANTQFAL 238 Query: 238 QHEIEMNINKALAAFL----GVDNFRSAVVAELNMDTQQIREIVYDP----DSK-VERSI 288 Q +++ ++ +L L G N LN D + I Y P D+K + RSI Sbjct: 239 QKKVQEDLQNSLQTLLEQMFGPGNVVVRANVTLNFDKKTQDTIEYLPVQGNDNKGIVRSI 298 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 + K+ ++ +Q S+ N P V+ + + E NYEIN + Sbjct: 299 QELKE--KATGTQGGSSPGTASNNPPVASTT---GNGTSDYSRTETTINYEINQIKTSLV 353 Query: 349 HDNYKLERLSIAVVVNK 365 K+E +S+AVVVN+ Sbjct: 354 QAQGKIESISVAVVVNQ 370 >gi|255099415|ref|ZP_05328392.1| flagellar MS-ring protein [Clostridium difficile QCD-63q42] Length = 516 Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 113/414 (27%), Positives = 187/414 (45%), Gaps = 53/414 (12%) Query: 20 TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN 79 T+I + VI + + L A + Y L+ +L+V D IS L ID ++ Sbjct: 27 TKIALGIGVIAICLALVFTA-ISASKNKYAVLFSELDVQDAADISAELESKKIDTKV--K 83 Query: 80 GSSISVPSSMVGKARIHLAAQGLPSSSSNS-GYELFDKVNSFGLTSFMQEITRVRALEGE 138 GS+I VP + V K R+ LA PS +S S G+ L D +S GLT +I + R ++GE Sbjct: 84 GSTIYVPRTEVDKLRLELA----PSLTSGSKGFALMDDSSSIGLTDEEFQIKKQRMIQGE 139 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRH---LV 195 I +TI+S + RVHI + F K A P ++ + + P I+ L+ Sbjct: 140 IEKTIKSFPQVEDTRVHITFGESSVFEK-EAVPGSAAVYLMLKPGTTLEKNQIKSVMALI 198 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEME-RNI------------LGKSLSIVQAIQHEIE 242 + +V N+ +V V+D+ LL+ +E N+ + K+ + QA+ ++E Sbjct: 199 SGSVTNIPEKNVQVIDNKMNLLSEGILEDENVNENNQPINSGISVDKNKASEQALNKQLE 258 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS-- 300 +I + L G ++ V A+L+ DT + EI DPD + R SK++ +S T+ Sbjct: 259 KSILEILEPIFGKGKVKATVNADLSFDTAEKTEIKIDPDKVAIKETR-SKNSSKSATNNV 317 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 Q A Q + ++ + L S E Y+ ++ Sbjct: 318 QGVDANMNNQGNNNGTNTEDSLDESFE------------------------YETGKIETH 353 Query: 361 VVVNKGRLTEVLGRSADQGKI-DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 +V G L + A GKI A++ IV+ A G++ RGDT+++ SM F Sbjct: 354 TIVAPGELNRLTASVAIDGKIAKGVQADVEDIVNNAIGMDGARGDTLSVVSMVF 407 >gi|166712032|ref|ZP_02243239.1| flagellar MS-ring protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 574 Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 124/569 (21%), Positives = 247/569 (43%), Gaps = 38/569 (6%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 Q+F SL TR L + ++I + + +A F+ P Y +LY L+ + L Sbjct: 19 QWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAADLLR 78 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 A I ++I +ISVP + AR+ LA GL + G+EL +K FG++ F++ Sbjct: 79 TAQIPYKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQFVEN 138 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYK 186 ALE E++RTI ++ + ARVH+ +P +F + +ASV+ +R Sbjct: 139 ARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQGLERN 198 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN-- 244 +AI +LVA+++P++ VTV+D +G++L+ + + + Q + E N Sbjct: 199 QVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESSYNQR 258 Query: 245 INKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 I + L G +++ ++ RE+ Y+ + RS +++ + + + P+ Sbjct: 259 IRELLEPMTGPGRVNPETSVDMDFSVVEEAREL-YNGEPAKLRSEQVNDTS--TTATGPQ 315 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE-------- 355 N P + + T+S + NY+L+ Sbjct: 316 GPPGATSNSPGQPPAPAAAGAPGTPAAANGQATAAAAPTESSKSATRNYELDRTLQHTRQ 375 Query: 356 ------RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 R+S+AV+++ G+ +Q + L I +V A G ++ RGDT+++ Sbjct: 376 PAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQAVGFDAARGDTVSVM 435 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL--GL--HALRRLHN 465 + F+ + +G + + + L LVG ++V L G+ LR+L Sbjct: 436 NAPFVREAV--AGEEGPKWWEDPRVQY-----GLRLLVGAVVVLALLFGVVRPTLRQLTG 488 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 + K+ + G + +P ++ +++ L +D S + + I + Sbjct: 489 VTPIKEKQRKGGNDDTP----QNADVRMVDDEDSLLPQMGEDTASIGQERKPAIALPDAY 544 Query: 526 QSDLRLL-HMIEINEERFAKILRKWARSE 553 + +R+ ++ + +R A++++ W SE Sbjct: 545 EERMRVAREAVKADSKRVAQVVKGWVASE 573 >gi|315179670|gb|ADT86584.1| Flagellar biosynthesis/type III secretory pathway lipoprotein [Vibrio furnissii NCTC 11218] Length = 579 Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 109/431 (25%), Positives = 204/431 (47%), Gaps = 30/431 (6%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +S + LY + E DV I L +I +R+ + + VP V + R+ LAA+G Sbjct: 61 WSSSQSFRPLYGQQEQFDVGDIVSVLEAESISYRLQEQNGQVLVPEGEVARVRMLLAAKG 120 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 + + +G + + +S G + FM+ LEGE+ RTI +++ + ARVH+ +P Sbjct: 121 I-KAKLPTGLDSLQEDSSLGTSQFMETARYRHGLEGELVRTIIALNAVSNARVHLAIPRQ 179 Query: 162 GSF-RKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F R+ G P+ASVM ++A + EAI +LV +V + V+V+D G+LL+ Sbjct: 180 TLFVRQNGEAPSASVMLELKAGEDLKPEQVEAIINLVVGSVTGMKPEFVSVIDQYGRLLS 239 Query: 219 ANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQIR 274 A+ + + K L + ++ ++ L +G NFR V A+++ ++ + Sbjct: 240 ADVASGDSGKVNAKYLDYQKNLEKQVIQRAADMLTPIVGPSNFRVQVAADMDFSRVEETQ 299 Query: 275 EIVYD-PDSKVERSIRLSKDAQRSETSQPESAVTVE-QNMPHVSDRKVPLPRSLENTDKK 332 EI+ + P + E ++ Q + Q + N P V+ K P S + + Sbjct: 300 EILDNTPVVQNEHTV------QNNSIDQIALGIPGSLSNQPPVTGEK-PTQDSQNSNARS 352 Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV 392 E Y + + T + ++++L+++V++N G S DQ K EI+ ++ Sbjct: 353 EINRQYAVGSSVRRTQYQQGQVKKLNVSVLLNSAAAPNGTGWS-DQEK-----TEISAML 406 Query: 393 SAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452 A GI++ RGD++++ S +F ++ ++ + D TV L +++G LL Sbjct: 407 MDAVGISAARGDSLSLMSFNFTPIEIEAPPSIPW-WQD------PTVQQPLRYVIGGLLG 459 Query: 453 TFLGLHALRRL 463 + LR L Sbjct: 460 MAMIFFVLRPL 470 >gi|256750740|ref|ZP_05491625.1| flagellar M-ring protein FliF [Thermoanaerobacter ethanolicus CCSD1] gi|256750323|gb|EEU63342.1| flagellar M-ring protein FliF [Thermoanaerobacter ethanolicus CCSD1] Length = 503 Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 103/375 (27%), Positives = 180/375 (48%), Gaps = 28/375 (7%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 +QL F+ + ++ I+A ++ + I L + + VN P+Y LY L + D + Sbjct: 10 EQLTDFWNKFDKKQKIQLGIIAILLFIGISLLV---YLVNRPNYVVLYSDLSIKDAGAVV 66 Query: 65 VAL-SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN-SFGL 122 L +E I ++IS++G++I VP + R+ LA +G+P G+ D +N S Sbjct: 67 EKLKTEFKIPYKISNDGTTILVPVQYKDEVRMKLATEGIPQG----GFSFQDAMNNSLAT 122 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMIRAI 180 T + + L+ EI ++++I G+ A V+I +PD +F + TA+VM+ + Sbjct: 123 TDQERRQKHLYFLQNEIQNSLKTIDGVQDAIVNIAVPDQNAFVLSNTTNQATAAVML-TL 181 Query: 181 NPSVYKSAEAIRHL---VAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQA 236 P V S+ ++ + V+ +V L +VTV+D+ GK+LTA ++ ++ + Sbjct: 182 KPGVTLSSSQVKGIIDFVSKSVEGLKPENVTVIDNNGKILTAESDSTAENANTQFTLQKK 241 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP----DSK-VERSIR-L 290 +Q +++ +I L G N LN D + I Y P D+K + RSI+ L Sbjct: 242 VQEDLQNSIQTLLEQVFGPGNVVVRANVTLNFDKKTQDTIEYLPVQGNDNKGIVRSIQEL 301 Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 + A ++ P A T N P +S + ++ E NYEIN + Sbjct: 302 KEKATGTQGGSP--AGTATNNPPVISTTG----NGTSDYNRTEITINYEINQIKTSLVQA 355 Query: 351 NYKLERLSIAVVVNK 365 K+E +SIAVVVN+ Sbjct: 356 QGKIENISIAVVVNQ 370 >gi|94495429|ref|ZP_01302009.1| flagellar M-Ring protein [Sphingomonas sp. SKA58] gi|94424817|gb|EAT09838.1| flagellar M-Ring protein [Sphingomonas sp. SKA58] Length = 586 Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 109/443 (24%), Positives = 195/443 (44%), Gaps = 52/443 (11%) Query: 38 AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97 AA + P +L+ L SD + ++ L + + + DN +++V KA++ L Sbjct: 67 AAWLALREPPQRDLFRGLPDSDKSAVAQVLDQNGVRYDF-DNSGAMTVAEDDYFKAKMML 125 Query: 98 AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 AAQGLP S+ + G + D + G + ++ A E ++ARTI++I + A+VH+ Sbjct: 126 AAQGLPKSAPD-GNSMIDSL-PMGASRAVEGEKLRSAREMDLARTIEAIDSVETAKVHLA 183 Query: 158 MPDMGSFRKIGARPTASVMIRAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 + F + +P+ASVM+R + AI HLVA+++P L D++++D G+ Sbjct: 184 VEPPSVFLRERTKPSASVMLRLAQGRQLTQQQVSAIVHLVASSIPELSPDDISLVDQNGR 243 Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LLT N+ + L++ I+ ++ L LG NF + V AELN +Q Sbjct: 244 LLTDNDGNAGD-DRQLAMQGKIEDRYRQSVIALLTPILGDGNFSTEVHAELNFAERQATR 302 Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE-QNMPHVSDRKVPLPRSLENTD---- 330 Y D RL +A S S P E +P + P+ ++ T+ Sbjct: 303 ETYPQD-----EARLRSEAG-SWASDPRGQGKGEASGIPGALSNQAPVDPTVTQTNPNGQ 356 Query: 331 ---------------------KKEE--QSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367 K EE N+E+ + ++RLS+AV ++ G Sbjct: 357 AVTQGQTAQAQGPGTPADPLMKTEETFNRNFELGREVSVVRDATGTVKRLSVAVALDNG- 415 Query: 368 LTEVLGRSADQGKIDS--YLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425 GK S +A + +V A G + RGD + ++S F++ + + Sbjct: 416 ---------PDGKPRSPQEIAALEALVKGAVGFDQTRGDVVALSSRSFVKEATAETPWYE 466 Query: 426 VSFMDILSRHFATVINALVFLVG 448 ++ L+R+ + ++ AL+ + G Sbjct: 467 ADWIAPLARNVSALLVALLVIFG 489 >gi|295399809|ref|ZP_06809790.1| flagellar M-ring protein FliF [Geobacillus thermoglucosidasius C56-YS93] gi|312111679|ref|YP_003989995.1| flagellar M-ring protein FliF [Geobacillus sp. Y4.1MC1] gi|294978212|gb|EFG53809.1| flagellar M-ring protein FliF [Geobacillus thermoglucosidasius C56-YS93] gi|311216780|gb|ADP75384.1| flagellar M-ring protein FliF [Geobacillus sp. Y4.1MC1] Length = 529 Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 101/388 (26%), Positives = 172/388 (44%), Gaps = 31/388 (7%) Query: 38 AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97 A FF LY L + +I L + NI ++DNG++I VP + ++ L Sbjct: 40 ATVFFATRTEMVPLYSNLTPQEAGQIKETLDQRNIKSEVADNGTTIKVPKDLADSLKVEL 99 Query: 98 AAQGLPSSSSNSG---YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARV 154 AA+G+P NSG Y F K SFG+T + ++ A++ E+A I+SI+G+ A+V Sbjct: 100 AAEGIP----NSGMIDYSFFGKNASFGMTDNEFNVVKLEAMQNELANLIKSINGVEDAKV 155 Query: 155 HIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLD 211 I +P F ++ ++ P S + I+ HLV+ +VPNL ++ +++ Sbjct: 156 MINLPQPSVFASDNQGEASASIVLKTKPGYQFSDQQIKALYHLVSKSVPNLPTDNIVIMN 215 Query: 212 STGKLLTANEMERNILGKSLSIVQAIQHEIEMNI----NKALAAFLGVDNFRSAVVAELN 267 + E+N G + + Q I+ +IE +I + L +G D +V A+++ Sbjct: 216 QFFEYFDLKNDEKNSTGTTFAAQQEIKQQIERDIQQRVQRMLGTMMGQDKVAVSVTADID 275 Query: 268 MDTQQIRE--IVYDPDSKVERSIRLS----KDAQRSETSQPESAVTVEQNMPHVSDRKVP 321 TQ+ RE +V D + I +S ++ + P N V + + Sbjct: 276 F-TQERREENLVAPVDEENNEGIAISVQRIQETYSGNGAPPGGTAGTGAN--EVPNYQAG 332 Query: 322 LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI 381 + N ++ EE N E+N YK+ L I V+V + S Q I Sbjct: 333 ANEANGNYERTEETINNEVNRIKKNIVESPYKIRDLGIQVMVEPPDPKD--PNSLPQQTI 390 Query: 382 DSYLAEINKIVSA--ATGINSRRGDTIT 407 D +I KI+ T I+ + G T+T Sbjct: 391 D----DIQKILGTIVRTSIDKQYGQTLT 414 >gi|229896276|ref|ZP_04511446.1| Flagellar M-ring protein fliF [Yersinia pestis Pestoides A] gi|229701199|gb|EEO89228.1| Flagellar M-ring protein fliF [Yersinia pestis Pestoides A] Length = 475 Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 117/482 (24%), Positives = 220/482 (45%), Gaps = 72/482 (14%) Query: 110 GYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA 169 G+EL D+ FG++ F ++I RALEGE++RTI ++ ++ RVH+ MP F + Sbjct: 19 GFELLDQ-EKFGISQFSEQINYQRALEGELSRTIGTLGPVLNVRVHLAMPKPSLFVREQK 77 Query: 170 RPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERN 225 PTASV + A+ P AI ++V+++V L G+VTV+D TG+LLT ++ R+ Sbjct: 78 SPTASVTL-ALQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLLTQSDSAGRD 136 Query: 226 ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVE 285 + L +++ + I LA +G N + V A+++ +++ + Y P+ Sbjct: 137 LNASQLKFTSEVENRYQRRIENILAPMVGNGNVHAQVTAQVDFASREQTDEEYKPNQAAN 196 Query: 286 ----RSIRLSKDAQRSETS--QPESAVTVEQNMPHVSDRKVPLPRSL------------- 326 RS ++S Q T+ A++ + + ++ ++P P Sbjct: 197 QGAVRSQQVSTSEQLGGTNVGGVPGALSNQPPVAPIAPIEIPQPAGAAANNAAPANTAAT 256 Query: 327 -------------ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN--KGRLTEV 371 + + ++ +N+E++ T ++RLS+AVVVN + + Sbjct: 257 ANANTTATAAKASSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVNYTSDKAGKP 316 Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVS 427 + S DQ LA++ + A G ++ RGDT+ + + F + ++ Q S Sbjct: 317 IALSKDQ------LAQVESLTREAMGFSTVRGDTLNVVNTPFTASDDTRGSSLPFWQQQS 370 Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISS 487 F D L +NA +L+ L+ L LR + AKK +V K+ S +++ Sbjct: 371 FFDQL-------LNAGRYLLILLVAWILWRKLLRPML----AKK-QVADKAAAS---VNN 415 Query: 488 AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILR 547 V T + S +++ +N Q R+++ V Q R+ + + + A ++R Sbjct: 416 IVQTAQAAE---TVKQSKEELALRKKN-QQRVSAEVQAQ---RIRELADKDPRVVALVIR 468 Query: 548 KW 549 +W Sbjct: 469 QW 470 >gi|85711042|ref|ZP_01042102.1| flagellar M-ring protein [Idiomarina baltica OS145] gi|85694955|gb|EAQ32893.1| flagellar M-ring protein [Idiomarina baltica OS145] Length = 570 Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 119/478 (24%), Positives = 205/478 (42%), Gaps = 55/478 (11%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 +I+D+L F + R ++ILA I V I +F+ + + L K+E + Sbjct: 29 SIVDKLANF-----DMLRQVVVILALAICVAIAIFIM--LWAQESTFRPL-AKMETEQLV 80 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNS-GYELFDKVNSF 120 L NI++++ +G+ +SVP ++ L G+ S S G ++ F Sbjct: 81 GTLDYLDANNIEYKV--DGNVVSVPEENYDAVKLQLTRAGVDYGQSESNGSDILMSEPGF 138 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 G++ ++ + + E ++AR I+ + + AARV + +P F + +P ASVM+ Sbjct: 139 GVSQRLERERLIHSREIQLARAIEEMRAVSAARVLLAVPKENVFARREKQPKASVMLNVK 198 Query: 181 NPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQ 238 E +I +VA++V +L+ VTV D G+LL + +L+ + + Sbjct: 199 GNQSLSEEEIASIVDMVASSVTSLETSQVTVTDQNGRLLNSGSQ------SALAATNSRE 252 Query: 239 HEIEMN--------INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290 +++E I+ L LG DN+ + V ++ + + +Y+PD Sbjct: 253 YQLERKREEEYLNKIDSILIPVLGYDNYTAQVDVTMDFTQSEKTQRLYNPDMP------- 305 Query: 291 SKDAQRSE-TSQPESAVTVEQNMPHVSDRKVPLP-------------RSLENTDKKEEQS 336 A RSE T + SA T +P + PL R + +E Sbjct: 306 ---AIRSEMTVENRSAGTAVGGIPGALSNQPPLESNIPEQATGAGSQRDATGSMHREATR 362 Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT 396 NYE++ T + +ERLS++V VN+ T G Q LA I +++ Sbjct: 363 NYELDNTVSYTRSQSGTIERLSVSVAVNQPMTTNADGEQVPQPASPEQLANIRRLLQGGI 422 Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMD--ILSRHFATVINALVFLVGTLLV 452 G + RGDTI + S+ F QL + G + + D R V+ LV LV L V Sbjct: 423 GFDLSRGDTIEVVSVPFA--QLPDLGAGETAMWDEPWFWRAARLVMGGLVILVLILAV 478 >gi|310659045|ref|YP_003936766.1| flagellar m-ring protein flif [Clostridium sticklandii DSM 519] gi|308825823|emb|CBH21861.1| Flagellar M-ring protein FliF [Clostridium sticklandii] Length = 521 Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 108/403 (26%), Positives = 189/403 (46%), Gaps = 45/403 (11%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 ++L + + +++ A F+ P+Y LY +++ + ++ L E I +R++ + +S Sbjct: 24 IMLGGLAVGLVVITTAMIFYFTRPNYVTLYRDIDLKTASEVTSQLDELKIPYRLNQD-NS 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 ISVP + + KA++ LA GLP ++ + Y NS ++ + R AL+ EIA Sbjct: 83 ISVPDTYINKAKVDLAGAGLPEATFD--YNDLINRNSMFMSDDEKNQARNYALQNEIANV 140 Query: 143 IQSISGIVAARVHIVMPDMGSF----RKIGARPTASVMIRAINPSV---YKSAEAIRHLV 195 IQSI G+ A V++ +P F KI A+ ASV + ++ + S + I LV Sbjct: 141 IQSIPGVKKAFVNLSIPKTQEFILQENKIDAK--ASVFLN-LDDKISLDQTSIQGITMLV 197 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAF 252 A +V L +VTV G++L + + N + +L + ++ ++E ++N LA Sbjct: 198 ANSVEGLKPENVTVHGPNGQVLNEDSTDTNNILVSQTNLELQNKVKLDVEKSLNNFLAPI 257 Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDP--DSKVERSIR-LSKDAQRSETSQ-----PES 304 G N +LN DT + + P + + + +R L ++ ++ E SQ P Sbjct: 258 YGYGNVSVMASVKLNFDTDNTQSKSFAPPIEGETDGLVRSLQENIEKVENSQEAVGNPGV 317 Query: 305 AVTVEQNMPHVSDRKVPLPRSLE-NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 E+ V D P +L N DK E NYE+N ++E L++AVV+ Sbjct: 318 DANAEE---EVVDYATLDPNALNSNYDKNERIVNYELNEIVKTVEKAKGQIENLTVAVVL 374 Query: 364 NK-----GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR 401 NK G LTE EI +++AATG+ ++ Sbjct: 375 NKDSLEGGELTE------------EQRTEIASLINAATGLETK 405 >gi|254461781|ref|ZP_05075197.1| flagellar M-ring protein FliF [Rhodobacterales bacterium HTCC2083] gi|206678370|gb|EDZ42857.1| flagellar M-ring protein FliF [Rhodobacteraceae bacterium HTCC2083] Length = 567 Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 108/428 (25%), Positives = 200/428 (46%), Gaps = 52/428 (12%) Query: 24 ILASVILVPIMLFMAARFFV--NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81 ++A+V LV I LF F+V P L+ L S+ + AL D +I Sbjct: 19 VVAAVFLVAIGLF----FYVTLQVPDRTTLFASLPESEKPAVMEALRANGTDVQIDPITG 74 Query: 82 SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 ++VP +R+ LA+QGLP+S + GY + + G + ++ + ++ E E++ Sbjct: 75 EMTVPVGDYHNSRLSLASQGLPTSMPD-GYSVLSDM-PMGTSRSVERMRLKQSQELELSL 132 Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVA 196 +I +I + +RVH+ +P+ +F + PTASV + RA++ + +AI HLV+ Sbjct: 133 SIDNIDVVAGSRVHLAIPERSAFARNAQNPTASVFVQLKLGRALS---SQQVQAIVHLVS 189 Query: 197 AAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLG 254 ++V NL VTV+D G+LL+ ++ + + L ++ I L +G Sbjct: 190 SSVANLPKSAVTVIDQNGRLLSDSVDDPATTLADRQLDYQLKLEDIYRRRIESLLTPVVG 249 Query: 255 VDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV-----TVE 309 N + V +++ +++ + + PD + ++ + A E S P V Sbjct: 250 PGNVSAQVSLDIDFTRREVTQDMVVPD---QSALLSEQSALEEEISAPSRGVPGAFTNTP 306 Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQS------------NYEINTKSIATTHDNYKLERL 357 MP R + + E D + E+S NYE++ K + + L + Sbjct: 307 PQMPSFERR---VESNGEEGDAQAEESSSAKMRSSNNLRNYEVSRKVSSESSPMALLTGV 363 Query: 358 SIAVVVNKGRLTEVLGRSADQGK-------ID-SYLAEINKIVSAATGINSRRGDTITIT 409 +AV++ R +G S + G+ ID + EI +V++ GIN+RRGDT+T++ Sbjct: 364 HVAVLL---RELSPIGESVEGGEAPLMQIGIDPEKIEEIKALVASTVGINARRGDTLTVS 420 Query: 410 SMDFLENQ 417 SM ++ ++ Sbjct: 421 SMPYISSE 428 >gi|299066535|emb|CBJ37725.1| putative Flagellar M-ring protein FliF [Ralstonia solanacearum CMR15] Length = 506 Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 106/415 (25%), Positives = 183/415 (44%), Gaps = 36/415 (8%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 ++ ++L R ++ A I V + +F ++ Y L+ L D + L Sbjct: 11 LWEGLSALARAGLVAGAICIAVAMGVFS---YWALHTDYQVLFSDLTPQDSAAMVAELDR 67 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 + +++ D G+SI V V K RI L + LP + G ELF+ + FG+T F Q+I Sbjct: 68 LKVPYQLGDQGTSILVARDQVYKTRIKLMGKDLPLHGA-VGLELFNN-SDFGMTEFAQKI 125 Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE 189 RAL+GE+ RTI S+S I RVH+ +P+ G F++ G+R A+V + V + + Sbjct: 126 NYQRALQGELTRTILSLSEIHDVRVHLALPEQGLFKQAGSRAKAAVTLTLKQGQVLRPEQ 185 Query: 190 --AIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAIQHEIEMN 244 I+ LV+A+VP + DVT++D G LT E E + L + + ++ ++ Sbjct: 186 ITGIQRLVSASVPGIATQDVTIVDQHGVALTRASGAEGEIDATSGRLDLKKETENYLQRK 245 Query: 245 INKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 + L G ++V L+MD Q E V S+ + P Sbjct: 246 VADVLERSFGPGQSIASVDVTLDMDRIQTTTEDVIPAASRTGHT--------------PS 291 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 VT E+ V D PL + + + + T +Y + R VV Sbjct: 292 GVVTRERE--SVRDNGAPLDTRVADASGGARGGSSQRET--------DYAVGRRVEQVVS 341 Query: 364 NKGRLTEVLGRSADQGKIDSYLAE-INKIVSAATGINSRRGDTITITSMDFLENQ 417 G + + + + +D+ E + ++V+AA G + RGD++ + + L Q Sbjct: 342 QPGSVRRIQVVAMVRTPLDADQQERLRRLVAAAAGASFERGDSVVVQPLGALVTQ 396 >gi|149189866|ref|ZP_01868146.1| flagellar M-ring protein [Vibrio shilonii AK1] gi|148836352|gb|EDL53309.1| flagellar M-ring protein [Vibrio shilonii AK1] Length = 582 Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 112/435 (25%), Positives = 201/435 (46%), Gaps = 38/435 (8%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +S Y LY + E D+ I L I +R+ + + V V K R+ LAA+G Sbjct: 64 WSSSQSYRPLYSQQERFDIGEIVSVLESEGIAYRLQEQNGQVLVAEGQVAKIRMLLAAKG 123 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 + + +G + + +S G + FM+ LEGE+ RTI S++ I ARVH+ +P Sbjct: 124 V-KAQLPTGLDSLKEDSSLGTSQFMENARYRHGLEGELVRTIISLNAISNARVHLAIPRQ 182 Query: 162 GSF-RKIGARPTASVMIRAINPS---VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F R+ G P+ASVMI + P EAI +LV +V + V+V+D G+LL Sbjct: 183 TLFVRQQGEEPSASVMIE-LKPGEDLKPDQVEAIINLVVGSVTGMKPEFVSVIDQYGRLL 241 Query: 218 TAN---EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM----DT 270 +A+ + K L + ++ +I L +G N+R V A+++ +T Sbjct: 242 SADVGSAEAGKVNAKYLEYQKNVEKQIIQRAADMLTPIVGPSNYRVQVAADMDFSRVEET 301 Query: 271 QQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD 330 Q+I + +P + E SI+ + + P S N P V+ +VP S Sbjct: 302 QEILDT--NPVVRNEHSIQ-NNTIDKIALGIPGSL----SNQPPVTG-EVPTNDSQNTNA 353 Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK--IDSYLAEI 388 + E Y + + T + ++ +LS++V++N+ +A G + A+I Sbjct: 354 RSELNRQYAVGSSVRRTQYQQGQISKLSVSVLLNES--------AAPNGTAWTPAERAQI 405 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 + +++ A GI++ RGD++++ S +F ++ + + D TV L +++G Sbjct: 406 STMITDAVGISADRGDSLSLMSFNFTPIEI-EAPPAMPWWQD------PTVQQPLRYVIG 458 Query: 449 TLLVTFLGLHALRRL 463 +L + LR L Sbjct: 459 GMLGMAMIFFVLRPL 473 >gi|119503663|ref|ZP_01625746.1| flagellar M-ring protein [marine gamma proteobacterium HTCC2080] gi|119460725|gb|EAW41817.1| flagellar M-ring protein [marine gamma proteobacterium HTCC2080] Length = 243 Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 65/195 (33%), Positives = 106/195 (54%), Gaps = 15/195 (7%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEAN-IDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P + LY + +D N +V+L +AN I + ++ +SVPS + +AR+ LA++ Sbjct: 41 WAMKPDFQPLYGAMSPAD-NATAVSLLQANGIPYTMAGGSGLLSVPSDQIPQARMALASE 99 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 G P G+E + GL+SFM++ RA+E E+ARTI ++ + ARVH+ Sbjct: 100 GFPRGG-GVGFESLYQEQEMGLSSFMEQARYNRAVEAELARTISAMDSVKGARVHVAASK 158 Query: 161 MGSFRKIGARPTASVMIRAINPSVY-------KSAEAIRHLVAAAVPNLDMGDVTVLDST 213 +F + G P+ASVM+ S+Y + I HLVA+++P L V+V+D Sbjct: 159 QSAFIRRGQEPSASVMV-----SLYPGRGLSERQLAGIVHLVASSIPELQASKVSVVDQA 213 Query: 214 GKLLTANEMERNILG 228 GKLL++ + E N G Sbjct: 214 GKLLSSQDGEDNDFG 228 >gi|219670159|ref|YP_002460594.1| flagellar M-ring protein FliF [Desulfitobacterium hafniense DCB-2] gi|219540419|gb|ACL22158.1| flagellar M-ring protein FliF [Desulfitobacterium hafniense DCB-2] Length = 537 Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 105/400 (26%), Positives = 186/400 (46%), Gaps = 23/400 (5%) Query: 21 RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80 +I+ +A+ + V I L ++ ++ ++P Y ++ +L I+ L E + +++ NG Sbjct: 24 KIITVAAPLAVAIAL-ISLLYWASNPSYVAIFTELTDIQAGEITSELDELKVKYKLGSNG 82 Query: 81 SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140 S+I VP R+ LA GLP S S E +K G T + + L+ E+ Sbjct: 83 SAILVPEKEAAGVRLKLANSGLPKGSEFSWSESLNKTR-VGETESDRRLRYNLGLQTELE 141 Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAA 198 T++++S + ARVH+ +P+ F + TA+V + S + I +L+AA+ Sbjct: 142 ATLKTLSNVKDARVHLNIPEETLFIEQQEATTAAVTLTLKEGSSITEDQIRGIANLLAAS 201 Query: 199 VPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFL----G 254 V L + DVT+LDS G L+ E N GK + ++ E N K++ + L G Sbjct: 202 VKGLKLEDVTILDSNGNTLSDVLNEDNQPGKMTATQIQLKQLTEENTRKSVQSMLDKAFG 261 Query: 255 VDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP- 313 A LN D + + P S + S + TS +A V+ N+P Sbjct: 262 AGKTIVRTNATLNFDQVTTDTVTHGPGSVLSES---HTTENTTNTSPGGTAPGVDTNVPG 318 Query: 314 HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373 +++ + S E T + N++++T + RLS++V+++ + Sbjct: 319 YLAPDGTWITSSSEKTS---DTLNHQVDTTQEQRIKSPGDIARLSVSVLLDADSI----- 370 Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 SADQ ID + +I IV++A GI+ RGD I + ++ F Sbjct: 371 -SADQ--IDDQIEKIEAIVASAAGIDRERGDEIQVAALPF 407 >gi|323341386|ref|ZP_08081630.1| putative flagellar M-ring protein fliF [Lactobacillus ruminis ATCC 25644] gi|323091263|gb|EFZ33891.1| putative flagellar M-ring protein fliF [Lactobacillus ruminis ATCC 25644] Length = 537 Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 116/454 (25%), Positives = 213/454 (46%), Gaps = 40/454 (8%) Query: 23 LILASVILVPIMLF--MAARFFVNSP-HYDNLYVKLEVSDVNRISVALSEANIDFRISDN 79 L+ +++L I LF + +++N+ Y L+ L +D IS L NI ++++D+ Sbjct: 21 LVKIAIVLGVISLFAIIGTVYYMNTRVEYSVLFSNLSEADAGTISQDLDSQNIKYKLADD 80 Query: 80 GSSISVPSSMVGKARIHLAAQG-LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 G +I V + V + RI LA LPSSS G+ELFD S T ++I RAL GE Sbjct: 81 GKTIMVDKTKVDQYRIDLAVDNKLPSSS--KGFELFDSA-SMMTTDEDRKIMYQRALTGE 137 Query: 139 IARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMIRAINPSVYKSA-EAIRHLV 195 + +I ++ + A+V++ +P + + AS+++ S+ K A + I L Sbjct: 138 LENSIAALDDVDKAKVNLTIPKSDNVFDNSTSKKAKASIVLTLKGTSISKDAVQGIVALT 197 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANE-----MERNILGKSLSIVQAIQHEIEMNINKALA 250 AV LD +V V+D TGK+L NE + K + + + ++E I + Sbjct: 198 TGAVQGLDKKNVKVVDQTGKILNKNEEDDASDSSSATSKYMKLKSQYEKQMEKKITGLIE 257 Query: 251 AFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQ 310 +G +++V +LN D + ++I + ++ RS + +++E Q ++ V Sbjct: 258 PVVGKGKVKASVNVDLNFDAVE-KKITNYSNPQI-RSENVQASGKQAEIKQAQTG-QVND 314 Query: 311 NMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTE 370 N+ +V+ S T N E+NT++ + + R++ +VV+N G L+ Sbjct: 315 NVDNVTGDANNDNASYNRT------VNNELNTETTKVINAPGSINRMTSSVVIN-GDLSA 367 Query: 371 VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMD 430 R+ I K++ A G + +RGDT+++ +++F + TV + Sbjct: 368 GDARN------------IRKLIQGALGYDKQRGDTVSVQAVNFARAKSTKKKTVAKKPVK 415 Query: 431 ILSRHF-ATVINALVFLVGTLLVTFLGLHALRRL 463 + +I A V +GT++ FL + RRL Sbjct: 416 KTNWVLIGALIAAGVLTLGTII--FLVIRRRRRL 447 >gi|261407984|ref|YP_003244225.1| flagellar MS-ring protein [Paenibacillus sp. Y412MC10] gi|329929286|ref|ZP_08283039.1| flagellar M-ring protein FliF [Paenibacillus sp. HGF5] gi|261284447|gb|ACX66418.1| flagellar M-ring protein FliF [Paenibacillus sp. Y412MC10] gi|328936655|gb|EGG33098.1| flagellar M-ring protein FliF [Paenibacillus sp. HGF5] Length = 526 Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 101/366 (27%), Positives = 185/366 (50%), Gaps = 32/366 (8%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 + +I+++A+V V I L + F + Y+ + L SD I L I +++S+ Sbjct: 22 KQKIMLIATVAFVLIALVVLTMQFSKT-KYEVAFRDLNSSDAAGIISHLETQGISYKLSE 80 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK-VNSFGLTSFMQEITRVRALEG 137 +G SI VPS+ K +I + +QGL + + G+E F+K ++ G+T E+ V AL G Sbjct: 81 DGRSILVPSTSAAKVQIDVGSQGLVQNGT-IGFETFEKNASAIGMTDNEFEVKYVNALNG 139 Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGA--RPTASVMIRAINPSVYKSAEAI---R 192 E+ R ++ + G+ A V + +P F K G + +ASV+++ P + E I Sbjct: 140 EVERLLEKMQGVQDATVLLNLPKESVFAKNGNEDQASASVVVQ-FKPGYRPNQEVIDGYY 198 Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGK---SLSIVQAIQHEIEMNINKA 248 +LV A+PNL + ++T+ + +LL TA + ++GK + ++ + ++++ N+ + Sbjct: 199 NLVKTAIPNLPIENITITNDEVELLATAKGGQGGLIGKVEENFALQKKFENDVRQNVQQF 258 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-DSKVERSIRLS-KDAQR--SETSQPES 304 L+ ++G + V ++LN D Q +E + P D + + I LS ++ Q+ S T P Sbjct: 259 LSQYMGSNKVNVLVASKLNFDQVQSKENIVTPVDEEEMKGIELSVQEIQKNYSGTGSPTG 318 Query: 305 AVTVEQNMPHVSDRKVP-LP----RSLENTDKKEEQSNYEIN--TKSIATTHDNYKLERL 357 V V + VP P N+++ + NYE+N TK I + Y ++ L Sbjct: 319 GVA------GVGEEAVPGYPSDSGSGETNSEELSKTVNYEVNRITKDIIASP--YTVKDL 370 Query: 358 SIAVVV 363 +I V V Sbjct: 371 TINVSV 376 >gi|254228798|ref|ZP_04922221.1| flagellar M-ring protein FliF [Vibrio sp. Ex25] gi|262396483|ref|YP_003288336.1| flagellar M-ring protein FliF [Vibrio sp. Ex25] gi|151938745|gb|EDN57580.1| flagellar M-ring protein FliF [Vibrio sp. Ex25] gi|262340077|gb|ACY53871.1| flagellar M-ring protein FliF [Vibrio sp. Ex25] Length = 569 Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 98/381 (25%), Positives = 180/381 (47%), Gaps = 22/381 (5%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +S + LY + E D+ I L + +R+ + + VP V K R+ LA++G Sbjct: 52 WSSSQSFRPLYSQQERFDIGEIVSVLESEGVSYRMQEQNGQVLVPEGEVAKVRMLLASKG 111 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 + + +G + + +S G + FM+ LEGE+ RTI S++ + ARVH+ +P Sbjct: 112 V-KAKLPTGLDSLKEDSSLGTSQFMETARYRHGLEGELVRTIMSLNSVANARVHLAIPRQ 170 Query: 162 GSF-RKIGARPTASVMIRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F R+ P+ASVM+ KS EAI +LV +V + V+V+D G+LL+ Sbjct: 171 TLFVRQNSENPSASVMLELKPGEDLKSEQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLS 230 Query: 219 AN---EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM-DTQQIR 274 A+ + K L + ++ +I L +G NFR V A+++ ++ + Sbjct: 231 ADVASAEAGKVNAKYLEYQKNVEKQIIQRAADMLTPIVGPSNFRVQVAADMDFSQVEETQ 290 Query: 275 EIVYD-PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKE 333 EI+ + P + E +I + + P S N P V+ +V S + E Sbjct: 291 EILDNAPVVRNEHTIH-NNSVDQIALGVPGSL----SNQPPVTGEEVETNDSQNTNARSE 345 Query: 334 EQSNYEINTKSIATTHDNYKLERLSIAVVVN-KGRLTEVLGRSADQGKIDSYLAEINKIV 392 Y + + T + ++E++S++V++N K V AD+ +I+ ++ Sbjct: 346 VNRQYAVGSSVRRTQYQQGQIEKMSVSVLLNSKASPDGVAWSEADK-------EQISNMI 398 Query: 393 SAATGINSRRGDTITITSMDF 413 A GI++ RGD++++ S +F Sbjct: 399 MDAVGISAARGDSLSLMSFNF 419 >gi|89895735|ref|YP_519222.1| hypothetical protein DSY2989 [Desulfitobacterium hafniense Y51] gi|89335183|dbj|BAE84778.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 537 Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 106/418 (25%), Positives = 192/418 (45%), Gaps = 25/418 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 I +L+F+ L R + +I + L + ++ ++ ++P Y ++ +L + Sbjct: 8 IKQSILEFWGK---LSRPQKIITVAAPLAVAIALISLLYWASNPSYVAIFTELTDIEAGE 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I+ L E ++++ NGS+I VP R+ LA+ GLP S S E +K G Sbjct: 65 ITSELDELKANYKLGSNGSAILVPEKEAAAIRLKLASAGLPKGSEFSWSESLNKTR-VGE 123 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T + + L+ E+ T++++S + ARVH+ +P+ F + TA+V + Sbjct: 124 TESDRRLRYNLGLQTELEATLKTLSNVKDARVHLNIPEETLFIEQQEATTAAVTLTLKEG 183 Query: 183 SVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240 S + I +L+AA+V L + DVT+LDS G L+ E N GK + ++ Sbjct: 184 SSITEDQIRGIANLLAASVKGLKLEDVTILDSNGNTLSDVLSEDNQPGKMTATQIQLKQL 243 Query: 241 IEMNINKALAAFL----GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 E N K++ + L G A LN D + + P + + S Sbjct: 244 TEENTRKSVQSMLDKAFGAGKTIVRTNATLNFDQVTTDTVTHGPGAVLSES---HTTENT 300 Query: 297 SETSQPESAVTVEQNMP-HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 + TS +A V+ N+P +++ + S E T + N++++T + Sbjct: 301 TNTSPGGTAPGVDTNVPGYLAADGTWITSSSEKTS---DTLNHQVDTTQEQRIKSPGDIA 357 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 RLS++V+++ + SADQ ID + +I IV++A GI+ RGD I + ++ F Sbjct: 358 RLSVSVLLDADSI------SADQ--IDDQIEKIEAIVASAAGIDRDRGDVIQVAALPF 407 >gi|153951308|ref|YP_001398635.1| flagellar MS-ring protein [Campylobacter jejuni subsp. doylei 269.97] gi|152938754|gb|ABS43495.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. doylei 269.97] Length = 560 Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 118/434 (27%), Positives = 208/434 (47%), Gaps = 41/434 (9%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +L Q+ Q +++ T + RI+I S+++V L A F + + +N Y L V +V+ Sbjct: 6 MLYQIGQLYQNLTR--KQRIVIATSIVVVVGFLVFLALFRGSGSNANNGYAVL-VENVSP 62 Query: 63 ISVA-----LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 S A L + NI +++ ++ + I VP + + R+ +A++G S G+E FD Sbjct: 63 SSSAAIVAKLEQNNIPYKL-ESENKILVPQDQIYRQRMFIASEGF-IKDSRVGFEAFD-T 119 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM- 176 +FG T+ Q++ RA+EGE+ARTI+++ I +A VHI P F + PTASV+ Sbjct: 120 QAFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASVVV 179 Query: 177 -IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIV 234 +R K + I+++V+AAVP L +V + D +G L E E +++ + Sbjct: 180 NVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIKFK 239 Query: 235 QAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293 + +E I + LA F G+D + +V + + Q+ + +YDP+ V L++ Sbjct: 240 SDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLNE- 298 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEIN----TKSIATTH 349 +R+ PE Q +P P +E D K + Y+ N ++ T Sbjct: 299 -ERTGRKDPEI-----QGVPGAVSNIGP----VEGLDNKGQIDTYKKNQVTTNNELSKTI 348 Query: 350 DNYKLE-----RLSIAVVVNKGRLTEVLGRSADQGK-----IDSYLAEINKIVSAATGIN 399 N K + R S AV ++ GR +V+ + D LA + IV A + Sbjct: 349 TNIKKQFATVLRTSAAVTID-GRYQDVVDENGDVKSEYVPLTKEELASVESIVKNAINFS 407 Query: 400 SRRGDTITITSMDF 413 + RGD++ + ++ F Sbjct: 408 ATRGDSVVVQNLPF 421 >gi|206895778|ref|YP_002246683.1| flagellar M-ring protein FliF [Coprothermobacter proteolyticus DSM 5265] gi|206738395|gb|ACI17473.1| flagellar M-ring protein FliF [Coprothermobacter proteolyticus DSM 5265] Length = 521 Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 91/379 (24%), Positives = 166/379 (43%), Gaps = 23/379 (6%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 +++N P Y L+ L I L N+ +++S +G+SI VP+ V R+ LA+ Sbjct: 43 YYLNRPQYALLFSDLMPEQAQAIVSQLESQNVRYKLSSDGASIYVPNDKVTSLRLELASS 102 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GL S+ GYELFD +++ LT Q+I RALEGE+ RTI + G+ + VH+ +P Sbjct: 103 GL-VGSTKPGYELFDNISNIFLTQEEQQIMYQRALEGELERTISGMPGVKSVSVHLSLPQ 161 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSA---EAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 + + + + P SA EAIR LVA AV + +V + +++ +L Sbjct: 162 RSLWTVTSTQTAQGAVYLTLKPGYSLSANQVEAIRQLVAHAVEGMSPENVVIAEASTGIL 221 Query: 218 TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 + + + L I + + I L G +N + ++ + Q I+ Sbjct: 222 AGDLAQSGVDKGYLEIKKQLDELYASKIRSFLGQTFGPENIMVSADVDVEVTKQNIQSET 281 Query: 278 YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP---HVSDRKVPLPRSLENTDKKEE 334 + + S S + S +A V +P + S + P +++ Sbjct: 282 WGNTATKNVSDTESWSSSSSSGGPVGTATNVPGAIPSYVYTSTGEGPY------NYYRQQ 335 Query: 335 QSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSA 394 Q NYEI+ +++ + IA +V+ + ++ + ++++ Sbjct: 336 QINYEISRTISEIVPQEVEIKNVKIAAIVDSSVFKDYAVTAST----------VESLIAS 385 Query: 395 ATGINSRRGDTITITSMDF 413 A G+++ RGD +TSM F Sbjct: 386 AAGLDNARGDVALVTSMPF 404 >gi|56460308|ref|YP_155589.1| flagellar MS-ring protein [Idiomarina loihiensis L2TR] gi|56179318|gb|AAV82040.1| Flagellar basal body M-ring protein [Idiomarina loihiensis L2TR] Length = 570 Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 111/448 (24%), Positives = 197/448 (43%), Gaps = 24/448 (5%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 R I++LA I V I +F+ + Y L +LE ++ + I++++ Sbjct: 42 RQVIVVLALAICVAIAVFIM--LWAQESTYRPLG-QLETEELISTLDYMDANGIEYQVE- 97 Query: 79 NGSSISVPSSMVGKARIHLAAQGLP-SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137 G+++SVP ++ L G+ +S+N+G E+ FG++ ++ + + E Sbjct: 98 -GNTVSVPEENYDAIKLQLTRAGVDYGNSTNNGSEILMSEPGFGVSQRLERERLIHSREV 156 Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLV 195 ++AR I+ I + AARV + +P F + P ASVM+ + E +I +V Sbjct: 157 QLARAIEEIKKVSAARVLLAVPKENVFARREKEPKASVMLNVRGGTSLSEEEVASIVDMV 216 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEM---NINKALAAF 252 A++V L+ VTV D G+LL + + + KS Q Q E I+ L Sbjct: 217 ASSVTGLNTESVTVTDQAGRLLNSGS-QSALAAKSSREYQIEQKREEAYLEKIDSILIPV 275 Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS-IRLSKDAQRSETSQPESAVTVEQN 311 LG DN+ + V ++ ++ + ++PD RS + + + S A+T N Sbjct: 276 LGYDNYTAQVDVTMDFTQREETQRQFNPDMPAIRSEMTVENRSMGSAIGGIPGALT---N 332 Query: 312 MPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 P + D +P + +E NYE++ T + ++RLS++V VN Sbjct: 333 QPPL-DSDIPEEAGDGTAGGGATGSTHREATRNYELDNSVTYTRNQTGTIKRLSVSVAVN 391 Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424 +T G Q + +A I +++ G + RGD+I + S+ F + +G Sbjct: 392 HEAITNEAGEGETQARSAEEIANIRRLLQGGLGFDINRGDSIEVVSVPFAQLPDLGAGET 451 Query: 425 QVSFMDILSRHFATVINALVFLVGTLLV 452 V R F V+ ALV +V L V Sbjct: 452 PVWEEPWFWRAFRLVMGALVIMVLILAV 479 >gi|153831728|ref|ZP_01984395.1| flagellar M-ring protein FliF [Vibrio harveyi HY01] gi|148872238|gb|EDL71055.1| flagellar M-ring protein FliF [Vibrio harveyi HY01] Length = 556 Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 98/382 (25%), Positives = 184/382 (48%), Gaps = 25/382 (6%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +S + LY + E D+ I L I +R+ + + VP V + R+ LA++G Sbjct: 38 WSSSQSFRPLYSQQERFDIGEIVSVLESEGISYRMQEQNGQVLVPEGEVARIRMLLASKG 97 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 + + +G + + +S G + FM+ LEGE+ RTI S++ + ARVH+ +P Sbjct: 98 V-KAKLPTGLDSLKEDSSLGTSQFMETARYRHGLEGELVRTIMSLNAVANARVHLAIPRQ 156 Query: 162 GSF-RKIGARPTASVMIRAINPS---VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F R+ P+ASVM+ + P + EAI +LV +V + V+V+D G+LL Sbjct: 157 TLFVRQNTENPSASVMLE-LKPGEDLKPEQVEAIINLVVGSVTAMKPEFVSVIDQYGRLL 215 Query: 218 TANEMER---NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM-DTQQI 273 +A+ + K L ++++ +I L +G NFR V A++N ++ Sbjct: 216 SADVASAEAGKVNAKYLEYQKSVEKQIIQRAADMLTPIVGPSNFRVQVAADMNFSQVEET 275 Query: 274 REIVYD-PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332 +EI+ + P + E +I+ + + P S N P V+ + P S + Sbjct: 276 QEILDNAPVVRNEHTIQ-NNSVDQIALGIPGSL----SNQPPVTG-ETPTNDSQNTNARS 329 Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS-ADQGKIDSYLAEINKI 391 E Y + + T + ++E+LS++V++N + + S AD+ +I + + + Sbjct: 330 EVNRQYAVGSSVRRTQYQQGQVEKLSVSVLLNSQAAPDGVAWSEADKSQISTMIMD---- 385 Query: 392 VSAATGINSRRGDTITITSMDF 413 A GI++ RGD++++ S +F Sbjct: 386 ---AVGISNARGDSLSLMSFNF 404 >gi|212637769|ref|YP_002314294.1| flagellar MS-ring protein [Shewanella piezotolerans WP3] gi|212559253|gb|ACJ31707.1| Flagellar FliF M-ring protein [Shewanella piezotolerans WP3] Length = 572 Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 103/397 (25%), Positives = 186/397 (46%), Gaps = 29/397 (7%) Query: 24 ILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSI 83 I+A+ ++V +ML+ A++ Y LY E D +I L I +R+ + + Sbjct: 47 IVAACVIV-LMLWSASQ------GYRPLYGNQENVDTAQIIEVLESEGISYRLDASSGLV 99 Query: 84 SVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTI 143 V +G+AR+ LAA+G+ + SG + D + G + FM++ +LEGE++RTI Sbjct: 100 LVVEDKLGRARMLLAARGV-KAKVPSGMDSLDS-SGIGTSQFMEQAKYRYSLEGELSRTI 157 Query: 144 QSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVP 200 ++ + +ARVH+ +P F R+ P+ASVM+ + S + E+I +LVA +V Sbjct: 158 MALKAVRSARVHLAIPKKTLFIRQQPELPSASVMLDLYSGSNIQPENIESIVNLVAGSVT 217 Query: 201 NLDMGDVTVLDSTGKLL----TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVD 256 + V V+D G L +AN+ + L Q ++ + + L LG D Sbjct: 218 GMTPERVQVVDQNGNHLSSAISANKDITQARDRQLKYTQELEQSLIGRASSMLQPILGQD 277 Query: 257 NFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVS 316 NF+ V A++N + + + DP S V +++ Q S + + A+ + + + Sbjct: 278 NFQVQVSAKVNFNQVEETKESLDPVSVV------TQENQSSNETNADMALGIPGALSNQP 331 Query: 317 DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA 376 P + ++E +++ T +LE LS++V++N E G S Sbjct: 332 PAATPEENNNRRNINQKESRQFDVGRSVRHTRFQQMQLENLSVSVLLNSQAAGET-GWSQ 390 Query: 377 DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 Q L +++ +V A G + RGD +I S +F Sbjct: 391 PQ------LQQLSSMVQDAIGFSQARGDQFSINSFEF 421 >gi|269960163|ref|ZP_06174539.1| flagellar M-ring protein [Vibrio harveyi 1DA3] gi|269835134|gb|EEZ89217.1| flagellar M-ring protein [Vibrio harveyi 1DA3] Length = 583 Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 99/389 (25%), Positives = 182/389 (46%), Gaps = 39/389 (10%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +S + LY + E D+ I L I +R+ + + VP V + R+ LA++G Sbjct: 65 WSSSQSFRPLYSQQERFDIGEIVSVLETEGISYRMQEQNGQVLVPEGEVARIRMLLASKG 124 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 + + +G + + +S G + FM+ LEGE+ RTI S++ + ARVH+ +P Sbjct: 125 V-KAKLPTGLDSLKEDSSLGTSQFMETARYRHGLEGELVRTIMSLNAVANARVHLAIPRQ 183 Query: 162 GSF-RKIGARPTASVMIRAINPS---VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F R+ P+ASVM+ + P + EAI +LV +V + V+V+D G+LL Sbjct: 184 TLFVRQNTENPSASVMLE-LKPGEDLKPEQVEAIINLVVGSVTAMKPEFVSVIDQYGRLL 242 Query: 218 TANEMER---NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 +A+ + K L ++++ +I L +G NFR V A++N Sbjct: 243 SADVASAEAGKVNAKYLEYQKSVEKQIIQRAADMLTPIVGPSNFRVQVAADMNF------ 296 Query: 275 EIVYDPDSKVERSIRLSKDAQ--RSE-TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDK 331 S+VE + + +A R+E T Q S + +P + P+ D Sbjct: 297 -------SQVEETQEILDNAPVVRNEHTIQNNSVDQIALGIPGSLSNQPPVTGETPTNDS 349 Query: 332 KEEQSNYEINTKSIA------TTHDNYKLERLSIAVVVNKGRLTEVLGRS-ADQGKIDSY 384 + + EIN + T + ++E+LS++V++N + + S AD+ +I + Sbjct: 350 QNTNARSEINRQYAVGSSVRRTQYQQGQIEKLSVSVLLNSQAAPDGVAWSEADKTQISTM 409 Query: 385 LAEINKIVSAATGINSRRGDTITITSMDF 413 + + A GI++ RGD++++ S +F Sbjct: 410 IMD-------AVGISNTRGDSLSLMSFNF 431 >gi|254973912|ref|ZP_05270384.1| flagellar MS-ring protein [Clostridium difficile QCD-66c26] gi|255091298|ref|ZP_05320776.1| flagellar MS-ring protein [Clostridium difficile CIP 107932] gi|255312956|ref|ZP_05354539.1| flagellar MS-ring protein [Clostridium difficile QCD-76w55] gi|255515715|ref|ZP_05383391.1| flagellar MS-ring protein [Clostridium difficile QCD-97b34] gi|255648809|ref|ZP_05395711.1| flagellar MS-ring protein [Clostridium difficile QCD-37x79] gi|260682028|ref|YP_003213313.1| flagellar MS-ring protein [Clostridium difficile CD196] gi|260685626|ref|YP_003216759.1| flagellar MS-ring protein [Clostridium difficile R20291] gi|306518924|ref|ZP_07405271.1| flagellar MS-ring protein [Clostridium difficile QCD-32g58] gi|260208191|emb|CBA60528.1| flagellar M-ring protein [Clostridium difficile CD196] gi|260211642|emb|CBE01895.1| flagellar M-ring protein [Clostridium difficile R20291] Length = 516 Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 111/414 (26%), Positives = 185/414 (44%), Gaps = 53/414 (12%) Query: 20 TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN 79 T+I + VI + + L A + Y L+ +L+V D IS L ID ++ Sbjct: 27 TKIALGIGVIAICLALVFTA-ISASKNKYAVLFSELDVQDAADISAELESKKIDTKV--K 83 Query: 80 GSSISVPSSMVGKARIHLAAQGLPSSSSNS-GYELFDKVNSFGLTSFMQEITRVRALEGE 138 GS+I VP + V K R+ LA PS + S G+ L D +S GLT +I + R ++GE Sbjct: 84 GSTIYVPRTEVDKLRLELA----PSLTGGSKGFALMDDSSSIGLTDEEFQIKKQRMIQGE 139 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRH---LV 195 I +TI+S + RVHI + F K A P ++ + + P I+ L+ Sbjct: 140 IEKTIKSFPQVEDTRVHITFGESSVFEK-EAIPGSAAVYLMLKPGTTLEKNQIKSVMALI 198 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERNI-------------LGKSLSIVQAIQHEIE 242 + +V N+ +V V+D+ LL+ +E + K+ + QA+ ++E Sbjct: 199 SGSVTNIPEKNVQVIDNKMNLLSEGILEDEDVDENNQPTNSLINVDKNKASEQALNKQLE 258 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS-- 300 +I + L G ++ V A+L+ DT + EI DPD + R SK++ +S T+ Sbjct: 259 KSILEMLEPIFGKGKVKATVNADLSFDTAEKTEIKIDPDKVAIKETR-SKNSSKSATNNV 317 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 Q A Q + ++ + L S E Y+ ++ Sbjct: 318 QGVDANMNNQGNNNGTNTEDSLDESFE------------------------YETGKIETH 353 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYL-AEINKIVSAATGINSRRGDTITITSMDF 413 +V G L + A GKI + A++ IV+ A G++ RGDT+++ SM F Sbjct: 354 TIVAPGELNRLTASVAIDGKIAKGVQADVEDIVNNAIGMDGARGDTLSVVSMVF 407 >gi|255305272|ref|ZP_05349444.1| flagellar MS-ring protein [Clostridium difficile ATCC 43255] Length = 516 Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 112/414 (27%), Positives = 186/414 (44%), Gaps = 53/414 (12%) Query: 20 TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN 79 T+I + V+ + + L A + Y L+ +L+V D IS L ID ++ Sbjct: 27 TKIALGIGVVAICLALVFTA-ISASKNKYAVLFSELDVQDAADISAELESKKIDTKV--K 83 Query: 80 GSSISVPSSMVGKARIHLAAQGLPSSSSNS-GYELFDKVNSFGLTSFMQEITRVRALEGE 138 GS+I VP + V K R+ LA PS + S G+ L D +S GLT +I + R ++GE Sbjct: 84 GSTIYVPRTEVDKLRLELA----PSLTGGSKGFALMDDSSSIGLTDEEFQIKKQRMIQGE 139 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRH---LV 195 I +TI+S + RVHI + F K A P ++ + + P I+ L+ Sbjct: 140 IEKTIKSFPQVEDTRVHITFGESSVFEK-EAVPGSAAVYLMLKPGTTLEKNQIKSVMALI 198 Query: 196 AAAVPNLDMGDVTVLDSTGKLLT--------ANEMERNILG-----KSLSIVQAIQHEIE 242 + +V N+ +V V+D+ LL+ +E + I G K+ + QA+ ++E Sbjct: 199 SGSVTNIPEKNVQVIDNKMNLLSEGILEDEDVDENNQPINGGISVDKNKASEQALNKQLE 258 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS-- 300 +I + L G ++ V A+L+ DT + EI DPD + R SK++ +S T+ Sbjct: 259 KSILEMLEPIFGKGKVKATVNADLSFDTAEKTEIKIDPDKVAIKETR-SKNSSKSATNNV 317 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 Q A Q + ++ + L S E Y+ ++ Sbjct: 318 QGVDANMNNQGNNNGTNTEDSLDESFE------------------------YETGKIETH 353 Query: 361 VVVNKGRLTEVLGRSADQGKI-DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 +V G L + A GKI A++ IV+ A G++ RGDT+++ SM F Sbjct: 354 TIVAPGELNRLTASVAIDGKIAKGVQADVEDIVNNAIGMDGARGDTLSVVSMVF 407 >gi|91223211|ref|ZP_01258477.1| flagellar M-ring protein [Vibrio alginolyticus 12G01] gi|91192024|gb|EAS78287.1| flagellar M-ring protein [Vibrio alginolyticus 12G01] Length = 570 Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 98/388 (25%), Positives = 183/388 (47%), Gaps = 35/388 (9%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +S + LY + E D+ I L + +R+ + + VP V K R+ LA++G Sbjct: 52 WSSSQSFRPLYSQQERFDIGEIVSVLESEGVSYRMQEQNGQVLVPEGEVAKVRMLLASKG 111 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 + + +G + + +S G + FM+ LEGE+ RTI S++ + ARVH+ +P Sbjct: 112 V-KAKLPTGLDSLKEDSSLGTSQFMETARYRHGLEGELVRTIMSLNSVANARVHLAIPRQ 170 Query: 162 GSF-RKIGARPTASVMIRAINPS---VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F R+ P+ASVM+ + P + EAI +LV +V + V+V+D G+LL Sbjct: 171 TLFVRQNSENPSASVMLE-LKPGEDLKPEQVEAIINLVVGSVTAMKPEFVSVIDQYGRLL 229 Query: 218 TAN---EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM-DTQQI 273 +A+ + K L ++++ +I L +G NFR V A+L+ ++ Sbjct: 230 SADVASAEAGKVNAKYLEYQKSVEKQIIQRAADMLTPIVGPSNFRVQVAADLDFSQVEET 289 Query: 274 REIVYD-PDSKVERSI------RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSL 326 +EI+ + P + E +I +++ S ++QP P +V S Sbjct: 290 QEILDNAPVVRNEHTIHNNSVDQIALGVPGSLSNQP----------PVTGSGEVETSDSQ 339 Query: 327 ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN-KGRLTEVLGRSADQGKIDSYL 385 + E Y + + T + ++E+LS++V++N K V AD+ Sbjct: 340 NTNARSEVNRQYAVGSSVRRTQYQQGQIEKLSVSVLLNSKASPDGVAWSEADK------- 392 Query: 386 AEINKIVSAATGINSRRGDTITITSMDF 413 +I+ ++ A GI++ RGD++++ S +F Sbjct: 393 EQISNMIMDAVGISATRGDSLSLMSFNF 420 >gi|156976202|ref|YP_001447108.1| flagellar MS-ring protein [Vibrio harveyi ATCC BAA-1116] gi|156527796|gb|ABU72881.1| hypothetical protein VIBHAR_04973 [Vibrio harveyi ATCC BAA-1116] Length = 583 Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 98/382 (25%), Positives = 184/382 (48%), Gaps = 25/382 (6%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +S + LY + E D+ I L I +R+ + + VP V + R+ LA++G Sbjct: 65 WSSSQSFRPLYSQQERFDIGEIVSVLESEGISYRMQEQNGQVLVPEGEVARIRMLLASKG 124 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 + + +G + + +S G + FM+ LEGE+ RTI S++ + ARVH+ +P Sbjct: 125 V-KAKLPTGLDSLKEDSSLGTSQFMETARYRHGLEGELVRTIMSLNAVANARVHLAIPRQ 183 Query: 162 GSF-RKIGARPTASVMIRAINPS---VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F R+ P+ASVM+ + P + EAI +LV +V + V+V+D G+LL Sbjct: 184 TLFVRQNTENPSASVMLE-LKPGEDLKPEQVEAIINLVVGSVTAMKPEFVSVIDQYGRLL 242 Query: 218 TANEMER---NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM-DTQQI 273 +A+ + K L ++++ +I L +G NFR V A++N ++ Sbjct: 243 SADVASAEAGKVNAKYLEYQKSVEKQIIQRAADMLTPIVGPSNFRVQVAADMNFSQVEET 302 Query: 274 REIVYD-PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332 +EI+ + P + E +I+ + + P S N P V+ + P S + Sbjct: 303 QEILDNAPVVRNEHTIQ-NNSVDQIALGIPGSL----SNQPPVTG-ETPTNDSQNTNARS 356 Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS-ADQGKIDSYLAEINKI 391 E Y + + T + ++E+LS++V++N + + S AD+ +I + + + Sbjct: 357 EVNRQYAVGSSVRRTQYQQGQVEKLSVSVLLNSQAAPDGVAWSEADKSQISTMIMD---- 412 Query: 392 VSAATGINSRRGDTITITSMDF 413 A GI++ RGD++++ S +F Sbjct: 413 ---AVGISNARGDSLSLMSFNF 431 >gi|323493122|ref|ZP_08098253.1| flagellar MS-ring protein [Vibrio brasiliensis LMG 20546] gi|323312593|gb|EGA65726.1| flagellar MS-ring protein [Vibrio brasiliensis LMG 20546] Length = 582 Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 97/374 (25%), Positives = 177/374 (47%), Gaps = 27/374 (7%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110 LY + E D I L I++R+ + + V V + R+ LAA+G+ + +G Sbjct: 73 LYSQQERFDTGEIVSVLESEGINYRLQEKNGQVLVAEGEVARIRMLLAAKGV-KAKLPTG 131 Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGA 169 + + +S G + FM+ LEGE+ RTI S++ + ARVH+ +P F R+ Sbjct: 132 LDSLQEDSSLGTSQFMETARYRHGLEGELVRTIISLNAVSNARVHLAIPRQTLFVRQNSE 191 Query: 170 RPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMER 224 P+ASVM+ K EAI +L+ +V + V+V+D G+LL+A+ Sbjct: 192 APSASVMLELKPGEELKPPQVEAIINLLVGSVTGMKPEQVSVIDQYGRLLSADVASAEAG 251 Query: 225 NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM-DTQQIREIVYD-PDS 282 + K L ++++ +I L +G NFR V A++N ++ +EI+ + P Sbjct: 252 KVNAKYLDYQKSVEKQIIQRAADMLTPIVGPSNFRVQVAADMNFSQVEETQEILDNTPIV 311 Query: 283 KVERSIRLSKDAQRSETSQPESAVTVE---QNMPHVSDRKVPLPRSLENTDKKEEQSNYE 339 + E +I + S + A+ V N P V+ +VP S + E Y Sbjct: 312 RNEHTI--------TNNSIDQIALGVPGTLSNQPPVTG-EVPTQDSQNTNARSEINRQYA 362 Query: 340 INTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN 399 + + T + ++E+LS++V++N+ + D+ ++I+ +++ A GI Sbjct: 363 VGSSVRRTQYQQGQIEKLSVSVLLNEAAAPNGTAWTEDEK------SQISTMITDAVGIA 416 Query: 400 SRRGDTITITSMDF 413 +RGD+ +I S +F Sbjct: 417 DQRGDSFSIMSFNF 430 >gi|148554208|ref|YP_001261790.1| flagellar M-ring protein FliF [Sphingomonas wittichii RW1] gi|148499398|gb|ABQ67652.1| flagellar M-ring protein FliF [Sphingomonas wittichii RW1] Length = 578 Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 110/393 (27%), Positives = 190/393 (48%), Gaps = 43/393 (10%) Query: 44 NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP 103 +P D L+ + +D ++ AL ANI ++I +++VP + +A++ LA QGLP Sbjct: 66 GAPQRD-LFAGMGDADKAAVAEALKTANIPYQIDRGTGALTVPETSFYQAKMLLAQQGLP 124 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 S+ + G L + G + ++ A E ++ARTI++I + +A+VH+ Sbjct: 125 KSAPD-GDALISSL-PLGASRAVEGEKLRTAREMDLARTIEAIDAVESAKVHVAAEQPSV 182 Query: 164 FRKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE 221 F + A+P ASVM +RA +AI HLVA++VPNL V+++D G+LL+A+ Sbjct: 183 FLRDEAKPQASVMLRLRAGRALADSQVQAIVHLVASSVPNLTPDGVSIVDQAGRLLSASG 242 Query: 222 MERNILGKSLSIVQAIQHEIEMN----INKALAAFLGVDNFRSAVVAELNM-DTQQIREI 276 + + ++ + IQ++IE + K L +G NF + V A+++ +TQ RE Sbjct: 243 G--DPMSQASTRQVDIQNKIEQRYLDALTKILTPIVGPGNFTAEVHADVDFTETQATRE- 299 Query: 277 VYDPDSKVERSIRLS-----KDAQRSE-----TSQPESAVTVEQNMPHVSDRKVPLPRS- 325 Y D+ V R + S KD + + ++QP +A V ++ V P + Sbjct: 300 SYPKDTAVVRQEQGSWTGDKKDGEATGIPGALSNQPPAASQVA----AAPNQTVAAPTAG 355 Query: 326 ---LENTDKKEEQSN--YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380 N K E N YE+ + T ++RLS+AV + +G + R Sbjct: 356 TTDAANAGKTSENYNRTYELGREVSVTRAPIGTVKRLSVAVALREG--SRKFSR------ 407 Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 + LA I +V A G + RGD + +++ F Sbjct: 408 --AELASIETLVRGAIGADQARGDVVALSARSF 438 >gi|255321871|ref|ZP_05363021.1| flagellar M-ring protein FliF [Campylobacter showae RM3277] gi|255300975|gb|EET80242.1| flagellar M-ring protein FliF [Campylobacter showae RM3277] Length = 564 Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 120/440 (27%), Positives = 199/440 (45%), Gaps = 54/440 (12%) Query: 44 NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP 103 N Y L+ +D I L + + ++I + G+ I VP+S V + RI +A+ G+ Sbjct: 48 NYDGYSVLFENTSAADSALIIQQLEKDKVKYKILNEGT-ILVPNSDVYRERISIASLGI- 105 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 G+E+FDK FG T Q++ RALEGE+ARTI+S++ I A V I +P Sbjct: 106 LKDGKVGFEIFDK-QEFGATDAEQKVKFQRALEGELARTIESLAPINKAIVRIAIPKETI 164 Query: 164 FRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+AS+++ +++N K I++LVAAAV NL V ++ G L Sbjct: 165 FTERATPPSASIVLNLKDGQSLN---LKQITGIKNLVAAAVANLKPEQVKIVSQDGVPLG 221 Query: 219 ANEMERNILGKSLSIVQAI------QHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQ 271 + E + S I Q I +H +E I L+ + G D + V + + + Sbjct: 222 EEDGEYD----SDQITQQIRYKRDAEHNLEEKIINVLSPIVGGSDKVVAKVTIDFDFARK 277 Query: 272 QIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDK 331 + +DP+S +++ Q E + S Q +P P+ L++ Sbjct: 278 DSQSETFDPNS-------VARSEQNVEEKRQGSKEAEVQGVPGAVSNIGPV-EGLQDGKM 329 Query: 332 KE------EQSNYEINTKSIATTHDNY-KLERLSIAVVVN---------KGRLT-EVLGR 374 KE +NYEI +K + D + K+ RLS AVVV+ KG T E+ Sbjct: 330 KELYSKSSSTTNYEI-SKKVERVKDQFAKINRLSAAVVVDGKYENKKDEKGNPTSEIAYV 388 Query: 375 SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSR 434 D+ + LA I+ ++ + G + RGD +T+++ +F + SF ++ Sbjct: 389 PLDKEQ----LARIDALIRQSIGFDQNRGDEVTVSNFEFQRQDGQTPASKVQSFFELYVV 444 Query: 435 HFATVINALVFLVGTLLVTF 454 F ++ L V LL F Sbjct: 445 PFLPILKYL--FVAILLYVF 462 >gi|56964034|ref|YP_175765.1| flagellar MS-ring protein [Bacillus clausii KSM-K16] gi|56910277|dbj|BAD64804.1| flagellar M-ring protein FliF [Bacillus clausii KSM-K16] Length = 527 Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 106/429 (24%), Positives = 197/429 (45%), Gaps = 26/429 (6%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 +Q+ F+ ++L ++ ++ + ++L+ I L A F N Y LY +L +++ +I Sbjct: 10 NQVQTFWTESSTLRKSAVISVVLLLLLAIALAAALLFRTN---YAPLYSQLTLAEAGQIQ 66 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 AL + + R+S++G++I VP + V + ++ LAA+GLP S S Y F FG+T Sbjct: 67 EALEQRGVAARVSNDGTTIHVPEADVDRLKVDLAAEGLPKSGSID-YAFFQNQMGFGMTD 125 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 + ++ E+A I+ + G+ A V I +P+ + G + + ++ + P Sbjct: 126 NEFTVIERSLMQTELAELIRGVQGVEQANVIITLPEESVWLNSGQESSTAAVVLQLEPGY 185 Query: 185 Y---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS---IVQAIQ 238 +A+ HL++ +VPNL + ++ + DS T E E + S I Q I+ Sbjct: 186 TLDSSQVKALYHLISKSVPNLPIENIVLSDSQFNNYTYQEEETSPAASFQSQREIKQEIE 245 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVER-----SIRLSKD 293 +++ IN+ L+A +G +N +V A+++ +Q E + +P + E S+ + Sbjct: 246 SDLKQTINQLLSAVVGPENAIVSVTADIDFTQEQRTEDLVEPVDEEEVSGLAISVERINE 305 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 T E V +P+ + E T EE+ NYE+N Y+ Sbjct: 306 MYEGTTGNEEGVAGVGDEIPNYTGAAGGGDSESERT---EERINYEVNRIHKEIIESPYE 362 Query: 354 LERLSIAVVVNKGRLTEVL--GRSADQGKIDSYLAEINKIVSAATGINSRR---GDTITI 408 + L I V+VN + L ++AD I + L I + G GD + + Sbjct: 363 IRDLGIQVMVNPPEGMQALPPQQTAD---ITAMLETIIRTTLPDDGEEEGEQDVGDRVVV 419 Query: 409 TSMDFLENQ 417 TSM F + + Sbjct: 420 TSMPFAQTE 428 >gi|269965409|ref|ZP_06179529.1| flagellar M-ring protein [Vibrio alginolyticus 40B] gi|269830055|gb|EEZ84284.1| flagellar M-ring protein [Vibrio alginolyticus 40B] Length = 583 Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 99/383 (25%), Positives = 183/383 (47%), Gaps = 25/383 (6%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +S + LY + E D+ I L + +R+ + + VP V K R+ LA++G Sbjct: 65 WSSSQSFRPLYSQQERFDIGEIVSVLESEGVSYRMQEQNGQVLVPEGEVAKVRMLLASKG 124 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 + + +G + + +S G + FM+ LEGE+ RTI S++ + ARVH+ +P Sbjct: 125 V-KAKLPTGLDSLKEDSSLGTSQFMETARYRHGLEGELVRTIMSLNSVANARVHLAIPRQ 183 Query: 162 GSF-RKIGARPTASVMIRAINPS---VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F R+ P+ASVM+ + P + EAI +LV +V + V+V+D G+LL Sbjct: 184 TLFVRQNSENPSASVMLE-LKPGEDLKPEQVEAIINLVVGSVTAMKPEFVSVIDQYGRLL 242 Query: 218 TAN---EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM-DTQQI 273 +A+ + K L ++++ +I L +G NFR V A+L+ ++ Sbjct: 243 SADVASAEAGKVNAKYLEYQKSVEKQIIQRAADMLTPIVGPSNFRVQVAADLDFSQVEET 302 Query: 274 REIVYD-PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332 +EI+ + P + E +I + + P S N P V+ +NT+ + Sbjct: 303 QEILDNAPVVRNEHTIH-NNSVDQIALGVPGSL----SNQPPVTGSGEVETNDSQNTNAR 357 Query: 333 EE-QSNYEINTKSIATTHDNYKLERLSIAVVVN-KGRLTEVLGRSADQGKIDSYLAEINK 390 E Y + + T + ++E+LS++V++N K V AD+ +I+ Sbjct: 358 SEVNRQYAVGSSVRRTQYQQGQIEKLSVSVLLNSKASPDGVAWSEADK-------EQISN 410 Query: 391 IVSAATGINSRRGDTITITSMDF 413 ++ A GI++ RGD++++ S +F Sbjct: 411 MIMDAVGISATRGDSLSLMSFNF 433 >gi|296282266|ref|ZP_06860264.1| flagellar M-ring protein FliF [Citromicrobium bathyomarinum JL354] Length = 526 Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 103/380 (27%), Positives = 176/380 (46%), Gaps = 37/380 (9%) Query: 51 LYVKLEVSDVNRISV--ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108 LY L+ D +R SV L +A ID++I++N ++SV S + +AR+ +A+ G ++ Sbjct: 56 LYSSLD--DASRASVVATLDQAGIDYQINNNTGALSVSESDLYRARMVVASNG-SIAAPE 112 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRAL-EGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 +G ++ + + G + + E R+RA E E+ T+Q I G+ + RVHI + F + Sbjct: 113 TGAQMIENL-PLGASRTL-EGDRLRAAQERELMLTVQEIDGVESVRVHIAKAERSVFVRE 170 Query: 168 GARPTASVMIRAINPS---VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER 224 P+AS+M+R + P AI +LVA +VP L V V+D GKLLT + Sbjct: 171 NVAPSASIMVR-MAPGRELADSQVSAIVNLVAGSVPGLSPDAVRVVDQHGKLLT--DKRE 227 Query: 225 NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV 284 + L + ++ ++ +++ L+ +G D F S V EL+M+ YD D + Sbjct: 228 GAGNERLDLQTQMEAKLTAQVDQLLSPMIGADAFSSQVQVELDMNEVTSARESYDKDGAI 287 Query: 285 ERSIRLSKDAQRSETSQ------PESAVTVEQNMPHVSDRK---VPLPRSLENTDKKEEQ 335 R + Q+S TSQ P + P ++DR P + Sbjct: 288 RR-----ETTQQSSTSQAPAAGIPGATANTPPADPQLADRAPQDTPPADGAQTMGDTSAS 342 Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395 YE+ + + L+R+S+AV ++K + + +I ++VSAA Sbjct: 343 RTYELGREVSVSNLTPGALKRVSVAVAIDKNAMANANAAD---------IKKIEELVSAA 393 Query: 396 TGINSRRGDTITITSMDFLE 415 G RGD +T+ F E Sbjct: 394 VGAQDARGDKVTVMIRPFTE 413 >gi|260767966|ref|ZP_05876900.1| flagellar M-ring protein FliF [Vibrio furnissii CIP 102972] gi|260615996|gb|EEX41181.1| flagellar M-ring protein FliF [Vibrio furnissii CIP 102972] Length = 579 Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 108/431 (25%), Positives = 203/431 (47%), Gaps = 30/431 (6%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +S + LY + E DV I L +I +R+ + + VP V + R+ LAA+G Sbjct: 61 WSSSQSFRALYGQQEQFDVGDIVSVLEAESISYRLQEQNGQVLVPEGEVARVRMLLAAKG 120 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 + + +G + + +S G + FM+ LEGE+ RTI +++ + ARVH+ +P Sbjct: 121 I-KAKLPTGLDSLQEDSSLGTSQFMETARYRHGLEGELVRTIIALNAVSNARVHLAIPRQ 179 Query: 162 GSF-RKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F R+ G P+ASVM ++A + EAI +LV +V + V+V+D G+LL+ Sbjct: 180 TLFVRQNGEAPSASVMLELKAGEDLKPEQVEAIINLVVGSVTGMKPEFVSVIDQYGRLLS 239 Query: 219 ANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQIR 274 A+ + + K L + ++ ++ L +G NFR V A+++ ++ + Sbjct: 240 ADVASGDSGKVNAKYLDYQKNLEKQVIQRAADMLTPIVGPSNFRVQVAADMDFSRVEETQ 299 Query: 275 EIVYD-PDSKVERSIRLSKDAQRSETSQPESAVTVE-QNMPHVSDRKVPLPRSLENTDKK 332 EI+ + P + E ++ Q + Q + N P V+ K P S + + Sbjct: 300 EILDNTPVVQNEHTV------QNNSIDQIALGIPGSLSNQPPVTGEK-PTQDSQNSNARS 352 Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV 392 E Y + + T + ++++L+++V++N S DQ K EI+ ++ Sbjct: 353 EINRQYAVGSSVRRTQYQQGQVKKLNVSVLLNSAAAPNGTAWS-DQEK-----TEISAML 406 Query: 393 SAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452 A GI++ RGD++++ S +F ++ ++ + D TV L +++G LL Sbjct: 407 MDAVGISAARGDSLSLMSFNFTPIEIEAPPSIPW-WQD------PTVQQPLRYVIGGLLG 459 Query: 453 TFLGLHALRRL 463 + LR L Sbjct: 460 MAMIFFVLRPL 470 >gi|283955743|ref|ZP_06373234.1| flagellar M-ring protein [Campylobacter jejuni subsp. jejuni 1336] gi|283792698|gb|EFC31476.1| flagellar M-ring protein [Campylobacter jejuni subsp. jejuni 1336] Length = 560 Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 100/369 (27%), Positives = 176/369 (47%), Gaps = 33/369 (8%) Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L + NI +++ ++ + I VP V + R+ +A++GL S G+E FD +FG Sbjct: 68 IVAKLEQNNIPYKL-ESENKILVPQDQVYRQRMFIASEGL-IKDSRVGFEAFD-TQAFGA 124 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAI 180 T+ Q++ RA+EGE+ARTI+++ I +A VHI P F + PTASV+ +R Sbjct: 125 TNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASVVVNVREG 184 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQH 239 K + I+++V+AAVP L +V + D +G L E E +++ + + Sbjct: 185 LKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIKFKSDQEK 244 Query: 240 EIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 +E I + LA F G+D + +V + + Q+ + +YDP+ V L++ +R+ Sbjct: 245 ALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLNE--ERTG 302 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEIN--------TKSIATTHD 350 PE Q +P P +E D K + Y+ N +K+I T Sbjct: 303 RKDPEI-----QGVPGAVSNIGP----VEGLDNKGQIDTYKKNQVTTNNELSKTITNTKK 353 Query: 351 NY-KLERLSIAVVVNKGRLTEVLGRSADQGK-----IDSYLAEINKIVSAATGINSRRGD 404 + + R S AV ++ G+ +V+ + D LA + IV ++ RGD Sbjct: 354 QFATVLRTSAAVTID-GKYQDVVDENGDVKSEYVPLTKEELASVESIVKNTINFSATRGD 412 Query: 405 TITITSMDF 413 ++ + ++ F Sbjct: 413 SVVVQNLPF 421 >gi|86151498|ref|ZP_01069713.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni 260.94] gi|85841845|gb|EAQ59092.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni 260.94] Length = 560 Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 100/369 (27%), Positives = 176/369 (47%), Gaps = 33/369 (8%) Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L + NI +++ ++ + I VP V + R+ +A++GL S G+E FD +FG Sbjct: 68 IVAKLEQNNIPYKL-ESENKILVPQDQVYRQRMFIASEGL-IKDSRVGFEAFD-TQAFGA 124 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAI 180 T+ Q++ RA+EGE+ARTI+++ I +A VHI P F + PTASV+ +R Sbjct: 125 TNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASVVVNVREG 184 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQH 239 K + I+++V+AAVP L +V + D +G L E E +++ + + Sbjct: 185 LKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIKFKSDQEK 244 Query: 240 EIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 +E I + LA F G+D + +V + + Q+ + +YDP+ V L++ +R+ Sbjct: 245 ALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLNE--ERTG 302 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEIN--------TKSIATTHD 350 PE Q +P P +E D K + Y+ N +K+I T Sbjct: 303 RKDPEI-----QGVPGAVSNIGP----VEGLDNKGQIDTYKKNQVTTNNELSKTITNTKK 353 Query: 351 NY-KLERLSIAVVVNKGRLTEVLGRSADQGK-----IDSYLAEINKIVSAATGINSRRGD 404 + + R S AV ++ G+ +V+ + D LA + IV ++ RGD Sbjct: 354 QFATVLRTSAAVTID-GKYQDVVDENGDVKSEYVPLTKEELASVESIVKNTINFSATRGD 412 Query: 405 TITITSMDF 413 ++ + ++ F Sbjct: 413 SVVVQNLPF 421 >gi|311030130|ref|ZP_07708220.1| flagellar MS-ring protein [Bacillus sp. m3-13] Length = 529 Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 98/379 (25%), Positives = 178/379 (46%), Gaps = 30/379 (7%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 I + F+ S T +T +L S ++V I A +F+N LY L V + + Sbjct: 8 IKTKTFSFWTSRTKAQKTAML---STVIVSIFAIAAMVYFLNKTDMAPLYKDLTVQETGQ 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L I +I++NG++I VP V ++ LAA+GLP S S Y F + + FG+ Sbjct: 65 IKEVLDGRGIQSQITNNGTAILVPQQSVDSLKVELAAEGLPKSGS-IDYGFFGERSGFGM 123 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAIN 181 T I ++ A++ E+A ++SI G+ A+V + +P+ G F R+ +AS++I N Sbjct: 124 TDNEFRIMKLDAMQTELANLVKSIEGVKEAQVMLSLPEEGVFVRESTQEASASIVIE--N 181 Query: 182 PSVYK----SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL--LTANEMERNILGKS--LSI 233 Y+ A+ HLV+ ++PNL ++ +++ + L N+ N S L + Sbjct: 182 DPGYQFDQNHVNALYHLVSKSIPNLATDNIVIMNQNFEYFDLNNNQSSGNTFNASTQLEL 241 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE----IVYDPDSKVERSIR 289 + I+ +I+ + + L +G + +V +++ TQ+ RE DP++ ++ Sbjct: 242 KKEIERDIQRQVQQMLGMMMGYNKVVVSVTTDIDF-TQEAREENRVTPVDPENMEGIAVS 300 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPL-----PRSLENTDKKEEQSNYEINTKS 344 + + + S T ++A V P + +P + +K EE+ N E+N Sbjct: 301 VERITE-SYTGSEDTAGGV----PGTGEADIPAYVAGGGSGSGDYEKMEERINNEVNRIR 355 Query: 345 IATTHDNYKLERLSIAVVV 363 YK+ L I V+V Sbjct: 356 SEIVESPYKVRDLGIQVMV 374 >gi|167623379|ref|YP_001673673.1| flagellar MS-ring protein [Shewanella halifaxensis HAW-EB4] gi|167353401|gb|ABZ76014.1| flagellar M-ring protein FliF [Shewanella halifaxensis HAW-EB4] Length = 566 Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 107/452 (23%), Positives = 209/452 (46%), Gaps = 27/452 (5%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y L ++ +++ ++ L + + I G + VP R+ L+ + Sbjct: 57 IWAQEPEYRPLG-QMSTAEMVQVLDVLDNNQVKYEIQ--GDVVKVPEDKFQDVRMLLSRE 113 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GL ++ +N+ + +K + FG++ M++ + E +AR I+ + + A+V + +P Sbjct: 114 GLDNTDANNDF--LNKDSGFGVSQRMEQARLKHSQEQNLARIIEELKSVTRAKVILALPK 171 Query: 161 MGSFRKIGARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + ++P+A+V++ + + ++I +VA+AV NL+ VTV D+ G+LL + Sbjct: 172 ENVFARNRSKPSATVVVSTRRSGLSQEEVDSIVDIVASAVHNLEPNKVTVTDANGRLLNS 231 Query: 220 NEMERN--ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 + + I + L IVQ + E + L LG +NF S V +++MD + + Sbjct: 232 GTQDGSSAIARRELEIVQQKESEYRNKVESILMPILGPENFTSQV--DVSMDFTAVEQTA 289 Query: 278 --YDPDSKVERSIRLSKDAQRSETS---------QPESAVTVEQNMPHVSDRKVPLPRSL 326 Y+PD RS + ++ TS QP A ++P + + + R+ Sbjct: 290 KRYNPDLPSLRSEMVVENNSNGGTSGGIPGALSNQPPMA----SDIPQEVNAEETVTRNS 345 Query: 327 ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN-KGRLTEVLGRSADQGKIDSYL 385 +T KE N+E++T T L R+S++V V+ K G + + L Sbjct: 346 GST-HKEATRNFELDTTISHTRQQIGTLRRVSVSVAVDFKNAPMAEDGSVNRVPRTEQEL 404 Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445 A I +++ A G N++RGD I + ++ F++ + + ++ R V+ ALV Sbjct: 405 ANIRRLLEGAVGFNTQRGDVIEVVTVPFMDQLIEAAPAPELWEQPWFWRVLRLVLGALVI 464 Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 LV L V L L +++ + + GG+ Sbjct: 465 LVLILAVVRPMLKKLVYPDSVNMPDEPQRGGE 496 >gi|11095419|gb|AAG29859.1|AF313764_2 flagellar M-Ring protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 619 Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 121/465 (26%), Positives = 206/465 (44%), Gaps = 72/465 (15%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 F +++P +LY D I+ AL I + I I+V KAR LA Q Sbjct: 71 FLLSAPTQRDLYPGARDGDRASIARALETGGIHYNIKRGNGVITVSEKEFYKARDLLAQQ 130 Query: 101 GLPSSSSNSGYELFDKVNSFGL-TSFMQEITRVRAL-EGEIARTIQSISGIVAARVHIVM 158 GLP S+ + + ++S L S E R+RA E +ARTI++I + ARVHI Sbjct: 131 GLPKSAPDGVH----VISSLPLGASRAVEAKRLRAAREVVLARTIETIDVVNQARVHIAE 186 Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 P F + TASVM++ + +A +AI++LVAA+VP + V+V+D G L Sbjct: 187 PQPSPFVREQVHGTASVMLKLMTGRNLSNAQVQAIQNLVAASVPGMAPEAVSVVDQAGHL 246 Query: 217 LTA-NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM-DTQQIR 274 L+A + + +I + L + Q ++ +NK L LG +N+ + V +L+ ++Q R Sbjct: 247 LSATSNADNDINDRQLRLQQTVEARYMDALNKLLVPLLGENNYTAEVHTDLDFTESQATR 306 Query: 275 EIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRS--------- 325 E S S +KD + A++ NMP P P + Sbjct: 307 ESYPKEGSLRSESGSWNKDGGPDQNGGIPGAMS---NMP-------PTPANPTQNPPPNL 356 Query: 326 -----------------------LENTDKKEEQSN--------YEINTKSIATTHDN--- 351 N ++ N E ++ A T +N Sbjct: 357 QPPAQPNNQQNAQNGQQGQNAQGQPNGQNAQQGQNARAPGSVPAETAQQAQARTSENFNR 416 Query: 352 -YKLERLSIAVVVNK----GRLTEVLG-RSADQGKIDS--YLAEINKIVSAATGINSRRG 403 Y+L R ++V+ N R++ + R + GK S +A++ K++ A G ++ RG Sbjct: 417 YYELGR-EVSVIRNPTGSVKRVSVAIALRQINHGKPPSPEQVAQLEKLIKGAIGFDASRG 475 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 D + I+S DF+ +F+ Q S++ +L+R+ + ++ A + + G Sbjct: 476 DVVAISSSDFMGGSVFSMPWYQNSWVPLLARNLSALLVAALVIFG 520 >gi|57237369|ref|YP_178382.1| flagellar MS-ring protein [Campylobacter jejuni RM1221] gi|86153720|ref|ZP_01071923.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni HB93-13] gi|57166173|gb|AAW34952.1| flagellar M-ring protein FliF [Campylobacter jejuni RM1221] gi|85842681|gb|EAQ59893.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni HB93-13] gi|315057739|gb|ADT72068.1| Flagellar M-ring protein fliF [Campylobacter jejuni subsp. jejuni S3] Length = 560 Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 100/369 (27%), Positives = 176/369 (47%), Gaps = 33/369 (8%) Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L + NI +++ ++ + I VP V + R+ +A++GL S G+E FD +FG Sbjct: 68 IVAKLEQNNIPYKL-ESENKILVPQDQVYRQRMFIASEGL-IKDSRVGFEAFD-TQAFGA 124 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAI 180 T+ Q++ RA+EGE+ARTI+++ I +A VHI P F + PTASV+ +R Sbjct: 125 TNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASVVVNVREG 184 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQH 239 K + I+++V+AAVP L +V + D +G L E E +++ + + Sbjct: 185 LKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIKFKSDQEK 244 Query: 240 EIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 +E I + LA F G+D + +V + + Q+ + +YDP+ V L++ +R+ Sbjct: 245 ALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLNE--ERTG 302 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEIN--------TKSIATTHD 350 PE Q +P P +E D K + Y+ N +K+I T Sbjct: 303 RKDPEI-----QGVPGAVSNIGP----VEGLDNKGQIDTYKKNQVTTNNELSKTITNTKK 353 Query: 351 NY-KLERLSIAVVVNKGRLTEVLGRSADQGK-----IDSYLAEINKIVSAATGINSRRGD 404 + + R S AV ++ G+ +V+ + D LA + IV ++ RGD Sbjct: 354 QFATVLRTSAAVTID-GKYQDVVDENGDVKSEYVPLTKEELASVESIVKNTINFSATRGD 412 Query: 405 TITITSMDF 413 ++ + ++ F Sbjct: 413 SVVVQNLPF 421 >gi|168698710|ref|ZP_02730987.1| Flagellar FliF M-ring protein [Gemmata obscuriglobus UQM 2246] Length = 523 Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 92/297 (30%), Positives = 151/297 (50%), Gaps = 22/297 (7%) Query: 1 MAILDQLLQ---FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYV-KLE 56 M + ++LL+ + +G S GR RI ++ S + V ++ A + Y L L Sbjct: 1 MDVFNRLLEQARAYWAGLSAGR-RIGVVLSFLGV-LLALGAVVYLSPGGRYTPLGAGPLP 58 Query: 57 VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 DV+ + LS I FR+S G+ I VP +A + LA G+P+ G+E+FD+ Sbjct: 59 PEDVSAMRTRLSGDGIPFRLSSGGTGIEVPDERYAEAVVSLAGAGIPARGGK-GFEVFDE 117 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 S T F+Q + RAL+ E+AR+I + + +ARV I P+ F + PTASV+ Sbjct: 118 -TSLMTTPFVQSVNYQRALQAELARSIMQMESVQSARVMIAKPEPSPFVRDQKNPTASVV 176 Query: 177 IR-----AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILG-K 229 I+ +NP+ +A AI LVA ++ L +VTV+++ G+LL+ N R+ L Sbjct: 177 IKLKPRMTMNPA---TAGAIVSLVAHSIEGLRPENVTVMETGGRLLSDPNAAARSGLPTP 233 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV--YDPDSKV 284 L ++ ++ + + L+ LG V A++N Q+I+E V Y PD +V Sbjct: 234 QLEYIERLETYLSTKAEEMLSKTLGPGRAVIRVSADVNF--QKIKERVKTYSPDGRV 288 >gi|322382303|ref|ZP_08056210.1| flagellar MS-ring protein-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153656|gb|EFX46031.1| flagellar MS-ring protein-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 527 Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 93/401 (23%), Positives = 193/401 (48%), Gaps = 21/401 (5%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 +T+I ++A+ + + I+ + ++ Y + L+ + I L + I +++S Sbjct: 22 KTKITLIAAAVFM-ILTVGIISYNLSKTEYSTAFTNLQPNAAADIKAYLDQEKIPYKLSA 80 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 +G SI VP++ V + +I + ++GL + N GY +FD+ SFG T E+ ++ A++GE Sbjct: 81 DGKSIGVPTAQVAEVKIAVESKGL-NKGGNVGYGIFDQSGSFGTTDNQFEMQKLNAMQGE 139 Query: 139 IARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINPSVYKSAE--AIRHLV 195 + + I S I ++V I +P+ G F K + +ASV++ + I +LV Sbjct: 140 LQQLINSNQAIANSKVLINIPEQGVFLSKNEEKASASVVLEVKQGYTLDQNQIDTIYNLV 199 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS-----LSIVQAIQHEIEMNINKALA 250 + +V NL + ++T+ D G+ + ++ + + G + + + + +++ NI LA Sbjct: 200 SHSVKNLPLDNITIADQFGQYMVPSKADGSPQGSTQVANQFQVKKQFESDMQRNIVNLLA 259 Query: 251 AFLGVDNFRSAVVAELNMDTQQIRE-IVYDPDSKVERSIRLS-KDAQRSETSQPESAVTV 308 G + VV+ +N D ++ +E +V P+ ++ + +S ++ Q+S +S +A V Sbjct: 260 PMYGQNKVVVNVVSTMNFDQKKTKEQLVSAPNQDEQKGLEISVQELQKSASSDGATAGGV 319 Query: 309 EQNMPHVSDRKVPLPRSLENT--DKKEEQS---NYEINTKSIATTHDNYKLERLSIAVVV 363 VP S N+ K EE NYE+N + Y ++ L+I V + Sbjct: 320 ----AGSGTNDVPGYESTSNSGNSKSEENQKTVNYEVNRITNDIIRAPYVVKDLNITVAI 375 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD 404 + + G+ + +++ + I K A +G+ + D Sbjct: 376 DTKSVNGNPGKIENAELLENAMKGIVKTALADSGVEYEQAD 416 >gi|218508171|ref|ZP_03506049.1| flagellar MS-ring protein [Rhizobium etli Brasil 5] Length = 92 Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 49/93 (52%), Positives = 70/93 (75%), Gaps = 1/93 (1%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 +IL V + I + +AA FVN P + LYV L+ D+N+IS+AL+EANI+F++ +G+S Sbjct: 1 MILGGVGALSIAIILAAALFVNKPAQETLYVGLDAPDLNQISMALAEANINFQVGTDGAS 60 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115 ISVP+ M GKAR+ LA +GLP +S+N+GYELFD Sbjct: 61 ISVPAGMTGKARLMLAERGLP-NSANAGYELFD 92 >gi|157414615|ref|YP_001481871.1| flagellar MS-ring protein [Campylobacter jejuni subsp. jejuni 81116] gi|157385579|gb|ABV51894.1| flagellar M-ring protein [Campylobacter jejuni subsp. jejuni 81116] gi|307747255|gb|ADN90525.1| Flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni M1] gi|315931604|gb|EFV10570.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni 327] Length = 560 Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 100/369 (27%), Positives = 175/369 (47%), Gaps = 33/369 (8%) Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L + NI +++ ++ + I VP V + R+ +A++GL S G+E FD +FG Sbjct: 68 IVAKLEQNNIPYKL-ESENKILVPQDQVYRQRMFIASEGL-IKDSRVGFEAFD-TQAFGA 124 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAI 180 T+ Q + RA+EGE+ARTI+++ I +A VHI P F + PTASV+ +R Sbjct: 125 TNEEQRVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASVVVNVREG 184 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQH 239 K + I+++V+AAVP L +V + D +G L E E +++ + + Sbjct: 185 LKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIKFKSDQEK 244 Query: 240 EIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 +E I + LA F G+D + +V + + Q+ + +YDP+ V L++ +R+ Sbjct: 245 ALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLNE--ERTG 302 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEIN--------TKSIATTHD 350 PE Q +P P +E D K + Y+ N +K+I T Sbjct: 303 RKDPEI-----QGVPGAVSNIGP----VEGLDNKGQIDTYKKNQVTTNNELSKTITNTKK 353 Query: 351 NY-KLERLSIAVVVNKGRLTEVLGRSADQGK-----IDSYLAEINKIVSAATGINSRRGD 404 + + R S AV ++ G+ +V+ + D LA + IV ++ RGD Sbjct: 354 QFATVLRTSAAVTID-GKYQDVVDENGDVKSEYVPLTKEELASVESIVKNTINFSATRGD 412 Query: 405 TITITSMDF 413 ++ + ++ F Sbjct: 413 SVVVQNLPF 421 >gi|21231374|ref|NP_637291.1| flagellar MS-ring protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768573|ref|YP_243335.1| flagellar MS-ring protein [Xanthomonas campestris pv. campestris str. 8004] gi|188991617|ref|YP_001903627.1| flagellar MS-ring protein [Xanthomonas campestris pv. campestris str. B100] gi|21113037|gb|AAM41215.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573905|gb|AAY49315.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004] gi|167733377|emb|CAP51578.1| Flagellar biosynthesis lipoprotein FliF [Xanthomonas campestris pv. campestris] Length = 573 Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 132/571 (23%), Positives = 248/571 (43%), Gaps = 43/571 (7%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 Q+F S+ TR L + ++I + + +A F+ P Y LY L+ + L Sbjct: 19 QWFDRIRSMQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQALYTGLDDKGNAEAADLLR 78 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 A I F+I + +ISVP + AR+ LA GL + G+EL +K FG++ F++ Sbjct: 79 TAQIPFKIDQSTGAISVPQDRLYDARLKLAGSGLTGQQTGGGFELMEKDPGFGVSQFVEN 138 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYK 186 ALE E++RTI ++ + ARVH+ +P +F + +ASV+ +R Sbjct: 139 ARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQGLERN 198 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN-- 244 +AI +LVA+++P++ VTV+D +G++L+ + + + Q + E N Sbjct: 199 QVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESSYNQR 258 Query: 245 INKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPDSKVERSIRLSKDAQRSETSQ-P 302 I + L G V +++ ++ RE+ Y+ + RS ++S + + Q P Sbjct: 259 IRELLEPMTGAGRVNPEVSVDMDFSVVEEAREL-YNGEPAKLRSEQVSDSSTSATGPQGP 317 Query: 303 ESAVT----------VEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 A + P + K NYE++ T Sbjct: 318 PGATSNSPGQPPAPAATAGAPGAPAAGQAATPAAPTESSKSATRNYELDRTLQHTRQPAG 377 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 +++R+S+AV+++ G+ +Q + L I +V A G ++ RGDT+++ + Sbjct: 378 RIKRVSVAVLLDNVPRPGAKGKIVEQPLTAAELTRIEGLVKQAVGFDAARGDTVSVMNAP 437 Query: 413 FLEN--------QLFNSGTVQVSFMDILSRHFATVINALVF-LVGTLLVTFLGLHALRRL 463 F+ + + VQ ++ A V+ AL+F +V L G A++ Sbjct: 438 FVREAVAGEEGPKWWEDPRVQNGLRLLVG---AVVVLALLFGVVRPTLRQLTGTAAVKEK 494 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 H KKG G P S+ V ++ D+ + +D ++ + I Sbjct: 495 H-----KKGGNDGT------PQSADVR--MVDEDDDLMPRLEEDTAQIGQDKKLPIALPD 541 Query: 524 SKQSDLRLL-HMIEINEERFAKILRKWARSE 553 + + +RL ++ + +R A++++ W SE Sbjct: 542 AYEERVRLAREAVKADSKRVAQVVKGWVASE 572 >gi|57168454|ref|ZP_00367588.1| flagellar M-ring protein FliF [Campylobacter coli RM2228] gi|305432873|ref|ZP_07402031.1| flagellar M-ring protein FliF [Campylobacter coli JV20] gi|57020262|gb|EAL56936.1| flagellar M-ring protein FliF [Campylobacter coli RM2228] gi|304444027|gb|EFM36682.1| flagellar M-ring protein FliF [Campylobacter coli JV20] Length = 560 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 101/369 (27%), Positives = 174/369 (47%), Gaps = 33/369 (8%) Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L + N+ + I ++ S I VP V + R+ +A++GL S G+E FD SFG Sbjct: 68 IVAKLEQNNVPY-ILESESKILVPQDQVYRQRMFIASEGL-IKDSRVGFEAFD-TQSFGA 124 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAI 180 T+ Q + RA+EGE+ARTI+++ I +A VHI P F + PTASV+ +R Sbjct: 125 TNEEQRVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASVVVNVREG 184 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQH 239 K + I+++V+AA+P L +V + D +G L E E +++ + + Sbjct: 185 LKLTRKQIDGIKNIVSAAIPKLTKENVRISDQSGVPLDEQEAYEDDLVRAQIKYKSDQER 244 Query: 240 EIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 +E I + LA + G D R +V + + Q+ + +YDP+ V L++ +R+ Sbjct: 245 ALEDKIIETLAPYAGGTDKVRVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLNE--ERTG 302 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEIN--------TKSIATTHD 350 +PE Q +P P +E D K + Y+ N +K+I T Sbjct: 303 RKEPEI-----QGVPGAVSNIGP----VEGLDNKGQIDTYKKNQVTTNNELSKTITNTKK 353 Query: 351 NY-KLERLSIAVVVNKGRLTEVLGRSADQGK-----IDSYLAEINKIVSAATGINSRRGD 404 + + R S AV ++ G+ +V+ + D LA + IV ++ RGD Sbjct: 354 QFATVVRTSAAVTID-GKYQDVVDENGDVKSEYVPLSKEELASVESIVKNTINYSANRGD 412 Query: 405 TITITSMDF 413 ++ + ++ F Sbjct: 413 SVVVQNLPF 421 >gi|330946240|gb|EGH47422.1| flagellar MS-ring protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 227 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 65/202 (32%), Positives = 104/202 (51%), Gaps = 10/202 (4%) Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 ARI LA G+ S +N G+E+ DK G + FM+ R LEGE+ARTI +++ + A Sbjct: 1 ARIQLAQAGVVQSDANIGFEILDKDQGLGTSQFMEATRYRRGLEGELARTISALNNVKGA 60 Query: 153 RVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDV 207 RVH+ +P F + +P+ASV++ R++ PS AI +LVA +VP L + Sbjct: 61 RVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEPS---QVLAIINLVATSVPELSKSQI 117 Query: 208 TVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE 265 TV+D G LL+ A E + GK + ++ + + L LG D +++ V A Sbjct: 118 TVVDQKGTLLSDQAENSELTMAGKQFDYSRRMEGMLTQRVQNILQPILGNDRYKAEVSAV 177 Query: 266 LNMDTQQIREIVYDPDSKVERS 287 ++ + ++PD RS Sbjct: 178 VDFSAVESTAESFNPDQPALRS 199 >gi|167465322|ref|ZP_02330411.1| flagellar MS-ring protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 425 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 93/401 (23%), Positives = 193/401 (48%), Gaps = 21/401 (5%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 +T+I ++A+ + + I+ + ++ Y + L+ + I L + I +++S Sbjct: 22 KTKITLIAAAVFM-ILTVGIISYNLSKTEYSTAFTNLQPNAAADIKAYLDQEKIPYKLSA 80 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 +G SI VP++ V + +I + ++GL + N GY +FD+ SFG T E+ ++ A++GE Sbjct: 81 DGKSIGVPTAQVAEVKIAVESKGL-NKGGNVGYGIFDQSGSFGTTDNQFEMQKLNAMQGE 139 Query: 139 IARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINPSVYKSAE--AIRHLV 195 + + I S I ++V I +P+ G F K + +ASV++ + I +LV Sbjct: 140 LQQLINSNQAIANSKVLINIPEQGVFLSKNEEKASASVVLEVKQGYTLDQNQIDTIYNLV 199 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS-----LSIVQAIQHEIEMNINKALA 250 + +V NL + ++T+ D G+ + ++ + + G + + + + +++ NI LA Sbjct: 200 SHSVKNLPLDNITIADQFGQYMVPSKADGSPQGSTQVANQFQVKKQFESDMQRNIVNLLA 259 Query: 251 AFLGVDNFRSAVVAELNMDTQQIRE-IVYDPDSKVERSIRLS-KDAQRSETSQPESAVTV 308 G + VV+ +N D ++ +E +V P+ ++ + +S ++ Q+S +S +A V Sbjct: 260 PMYGQNKVVVNVVSTMNFDQKKTKEQLVSAPNQDEQKGLEISVQELQKSASSDGATAGGV 319 Query: 309 EQNMPHVSDRKVPLPRSLENT--DKKEEQS---NYEINTKSIATTHDNYKLERLSIAVVV 363 VP S N+ K EE NYE+N + Y ++ L+I V + Sbjct: 320 ----AGSGTNDVPGYESTSNSGNSKSEENQKTVNYEVNRITNDIIRAPYVVKDLNITVAI 375 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD 404 + + G+ + +++ + I K A +G+ + D Sbjct: 376 DTKSVNGNPGKIENAELLENAMKGIVKTALADSGVEYEQAD 416 >gi|121612614|ref|YP_001000028.1| flagellar MS-ring protein [Campylobacter jejuni subsp. jejuni 81-176] gi|167004986|ref|ZP_02270744.1| flagellar MS-ring protein [Campylobacter jejuni subsp. jejuni 81-176] gi|87250495|gb|EAQ73453.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni 81-176] Length = 560 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 100/369 (27%), Positives = 176/369 (47%), Gaps = 33/369 (8%) Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L + NI +++ ++ + I VP V + R+ +A++GL S G+E FD +FG Sbjct: 68 IVAKLEQNNIPYKL-ESENKILVPQDQVYRQRMFIASEGL-IKDSRVGFEAFD-TQAFGA 124 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAI 180 T+ Q++ RA+EGE+ARTI+++ I +A VHI P F + PTASV+ +R Sbjct: 125 TNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASVVVNVREG 184 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQH 239 K + I+++V+AAVP L +V + D +G L E E +++ + + Sbjct: 185 LKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRVQIKFKSDQEK 244 Query: 240 EIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 +E I + LA F G+D + +V + + Q+ + +YDP+ V L++ +R+ Sbjct: 245 ALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLNE--ERTG 302 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEIN--------TKSIATTHD 350 PE Q +P P +E D K + Y+ N +K+I T Sbjct: 303 RKDPEI-----QGVPGAVSNIGP----VEGLDNKGQIDTYKKNQVTTNNELSKTITNTKK 353 Query: 351 NY-KLERLSIAVVVNKGRLTEVLGRSADQGK-----IDSYLAEINKIVSAATGINSRRGD 404 + + R S AV ++ G+ +V+ + D LA + IV ++ RGD Sbjct: 354 QFATVLRTSAAVTID-GKYQDVVDENGDVKSEYVPLTKEELASVESIVKNTINFSATRGD 412 Query: 405 TITITSMDF 413 ++ + ++ F Sbjct: 413 SVVVQNLPF 421 >gi|220913732|ref|YP_002489041.1| flagellar M-ring protein FliF [Arthrobacter chlorophenolicus A6] gi|219860610|gb|ACL40952.1| flagellar M-ring protein FliF [Arthrobacter chlorophenolicus A6] Length = 532 Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 116/420 (27%), Positives = 191/420 (45%), Gaps = 39/420 (9%) Query: 6 QLLQFFK------SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 Q+ FF G S + + I+ +LV + +A ++ P Y L+ L+ +D Sbjct: 4 QITAFFTRMGSGIKGFSAAQRTLAIIGVAVLV--LGTVALTSWLAKPAYTPLFSGLKDTD 61 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 N I L + N+ + I++ GS+I VP V R+ AA GL S++ +GY L DK Sbjct: 62 ANGIVEQLRKDNVPYEIANGGSTILVPEEKVYDERLKAAAAGL-PSAAATGYSLLDK--- 117 Query: 120 FGLTS--FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 G+TS F Q +T RALEGE+A TIQ++ G+ AA V + +P+ F TASV + Sbjct: 118 LGVTSSEFQQSVTYKRALEGELATTIQAMEGVKAAAVRLAIPEKSVFVDKTPDATASVFV 177 Query: 178 RAINPSVYKSA---EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIV 234 P S +A+ HL +AA+ NL +V+V+DS G +L+ + G S Sbjct: 178 E-TQPGTTLSPDKVQAVVHLTSAAIENLKPANVSVVDSQGNVLST--VGGGAAGSSSKQA 234 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 Q ++ L + +G N AV A++ ++ Q R + + V LS ++ Sbjct: 235 GEYQERTTDSVKAVLDSVVGPGNATVAVAADVTGESAQQRSETFTAAADVP---ALS-ES 290 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT-DKKEEQSNYEINTKSIATTHDNYK 353 +SET P + VP + +T D + N +N + Sbjct: 291 TKSETYTGTGGGAAGVLGPD--NIAVPGGTNGNSTFDSTDSTKNNAVNKVTEDRIIPQGA 348 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 ++R +I+V +N+ V LA + +V++A G + RGD +T+ + F Sbjct: 349 VKRQTISVAINQAAAAGV------------NLASVRSLVTSAAGADPARGDVVTVEVLPF 396 >gi|332305659|ref|YP_004433510.1| flagellar M-ring protein FliF [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172988|gb|AEE22242.1| flagellar M-ring protein FliF [Glaciecola agarilytica 4H-3-7+YE-5] Length = 568 Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 110/467 (23%), Positives = 215/467 (46%), Gaps = 41/467 (8%) Query: 15 TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF 74 T + R +L++A VI V I +F+ + P Y L K++ ++ + ID+ Sbjct: 38 TDMVRQLMLVVALVICVAIAVFIM--IWAQEPDYRPL-AKMQTQELIEALDYFDQNQIDY 94 Query: 75 RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134 R+ G+++ V S ++ +A QGL S + G ++ + FG++ ++++ A Sbjct: 95 RL--EGNTVYVSSDQYQDIKLGMARQGL-SQGVSEGTDIIMQDMGFGVSQRVEKVRLKHA 151 Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIR 192 E ++ART++ +S + A+V + +P F + + +A+V+I A ++ S E +I Sbjct: 152 REQQLARTLEEMSAVTRAKVLLALPKENVFARREKKASATVVITARRGAIMGSEEVSSIV 211 Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHEIEMNINKALA 250 +VA+AV L+ VTV DS G+LL + + K + + + E I+ L Sbjct: 212 DIVASAVQGLEPERVTVTDSNGRLLNSGSQDSEAARSKKEFEMERKRESEYLQKIDSILI 271 Query: 251 AFLGVDNFRSAVVAELNMDTQQIREI--VYDPDSKVERSIRLSKDAQ---------RSET 299 LG+ N+ + A++ MD + + Y+PD RS +D + T Sbjct: 272 PVLGLGNYTAQ--ADVTMDFTAVEQTKRSYNPDLPAVRSEMTVEDNSVGGVLGGIPGALT 329 Query: 300 SQPESAVTVEQNMPH---VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 +QP ++ N+P S+ + +P + KEE NYE++T T + R Sbjct: 330 NQP----PLDSNIPEEAIASNTQTTMP----GRNHKEETRNYELDTTISHTKQQTGVIRR 381 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 LS++V ++ T G + + + L +I +++ G + RGD++ + S+ F Sbjct: 382 LSVSVALDHIATTGEDGTTTFSPRSQAELLDIRRLLQGGLGFDVTRGDSLEVVSIPF--- 438 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 S +V+ ++ + L ++G L++ L L +R + Sbjct: 439 ----SREGEVALEEVPIWEDPKFMPILKLVIGGLVIIVLLLAVVRPM 481 >gi|149908770|ref|ZP_01897431.1| flagellar M-ring protein [Moritella sp. PE36] gi|149808312|gb|EDM68251.1| flagellar M-ring protein [Moritella sp. PE36] Length = 580 Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 122/503 (24%), Positives = 219/503 (43%), Gaps = 79/503 (15%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNS----PHYDNLYVKLEVSDVNRISVA 66 +SG L R ++ S+ + ++ + A V S Y LY K E+ D I Sbjct: 25 MRSGLKLTREKLYRFRSLFFIGLLSSLIAAAIVASLWTAEQYVPLYGKQEMYDKANILEL 84 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L + DF++ I V S + + R+ LAA G+ + L K+ G + FM Sbjct: 85 LEQQKADFQLDTESGQILVAKSQLAQLRMALAALGVKKNIPMGMGGLEGKMG-LGTSQFM 143 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG---ARPTASVMIRAINPS 183 + + ALEGE+A +I +I + ARVH+ +P+ F IG + +ASVM+ + P Sbjct: 144 ESKSYRFALEGELALSIITIDAVRNARVHLALPERTLF--IGRHEEQASASVMLD-LQPG 200 Query: 184 VYKS---AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240 S AI +LVA++V NL +++V+D G+LLT + + + G+ + +++ Sbjct: 201 RELSQGQVSAIINLVASSVTNLKPDNISVVDQAGRLLTLSGSQSSNRGQVATQQVTFKND 260 Query: 241 IEMNINKALAAFL----GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 +E + + ++ L G +NFR + A+L+ + +VE ++ Sbjct: 261 LEARLTRRISELLYPLVGAENFRIQLTADLDFN-------------EVEETV-------- 299 Query: 297 SETSQPESAVTVEQNMPHVSD--RKVPLPRSLEN------------------------TD 330 ET PE+ +T E VS V +P SL N T Sbjct: 300 -ETVSPETVLTKENIREQVSGDVNAVGIPGSLSNLPPVKKVTKKGKKTASSEAESSMITK 358 Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINK 390 + + Y + + ++ ++ LS++V++N T +G D LA+I+ Sbjct: 359 RNDYSKEYVVGRSVMHKKYEFGRINNLSVSVILNNKIAT------GKEGWSDEELAKISI 412 Query: 391 IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL 450 + A GI + RGD + I+ DF+ + MD++ + ++ + ++G Sbjct: 413 TIKNAIGIVASRGDQLNISGYDFIAVPEITLEALPWWQMDVIQAYLRYIV---ITILGLA 469 Query: 451 LVTF----LGLHALRRLHNIDDA 469 L+ F L H + +L D+A Sbjct: 470 LIMFVIRPLTKHFVSQLRQADNA 492 >gi|300854208|ref|YP_003779192.1| flagellar M-ring protein FliF [Clostridium ljungdahlii DSM 13528] gi|300434323|gb|ADK14090.1| flagellar M-ring protein FliF [Clostridium ljungdahlii DSM 13528] Length = 532 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 115/430 (26%), Positives = 194/430 (45%), Gaps = 48/430 (11%) Query: 4 LDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 + ++ Q FK+ L R + + + + + + + + Y L+ L+ +D Sbjct: 1 MGKISQIFKNLIGKWKDLSRNKKIAFSVIAVGIVAALIFGGLTLGKTKYAVLFSNLDATD 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I L +D ++ GSSI VP V K R+ ++ + ++ + G+EL DK N Sbjct: 61 SATIYKQLQSDKVDAKVQ--GSSILVPKDQVDKIRMQTLSE-VQLTNGSQGFELLDKSN- 116 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 FG T I RAL+GEI RTI+S+ I ARVH+V+PD F K +ASV I+ Sbjct: 117 FGQTDQQMNINYQRALQGEIERTIKSLPQIENARVHLVLPDNTEFVKDTQPGSASVTIK- 175 Query: 180 INPSVYKSAEAIRHLVA---AAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIV-- 234 + P S + + LVA +V N+ +V V+D LL+ ++ +N G S S Sbjct: 176 LKPGQTLSQDQTKALVALVSGSVKNIPKENVEVIDDKLNLLS-RDLYQNKSGDSSSSTIP 234 Query: 235 ----QAIQHEIEMNINKALAAFL----GVDNFRSAVVAELNMDTQQIREIVYDPDSKVER 286 Q +Q + E ++ K L A L G + + + A+L+ D Q YDP + Sbjct: 235 ADKQQELQQKYEDDMEKRLLAMLEPIYGKNKVKVQINADLDFDAVQQDSTTYDP-----K 289 Query: 287 SIRLSK---DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTK 343 ++ +S+ + + + S V+ NM + S S +N E NY+++ Sbjct: 290 NVVVSEHTVNNTNTGATNNASTSPVDNNMSNTSVNNANGGNSTQN----EVTRNYDVS-- 343 Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403 K+E+ +I + RLT + + D D+ I + +A G N RG Sbjct: 344 ---------KVEQKTIKAPGSVKRLTASV--ALDGTVDDATKTSIRNLAVSAIGYNQTRG 392 Query: 404 DTITITSMDF 413 DTI + ++ F Sbjct: 393 DTINVEAIPF 402 >gi|251797445|ref|YP_003012176.1| flagellar MS-ring protein [Paenibacillus sp. JDR-2] gi|247545071|gb|ACT02090.1| flagellar M-ring protein FliF [Paenibacillus sp. JDR-2] Length = 527 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 93/382 (24%), Positives = 185/382 (48%), Gaps = 27/382 (7%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 +L QF+ +G+ + + L + I ++ + + Y+ + L+ +D I Sbjct: 11 RLTQFWGQ---MGKKQKIGLGASIGALLLTIVILTYIFTRTDYEVAFQNLDTTDAAAIMT 67 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L I +++S +G SISVPS++ + R+ + +QGL + S G+E F+ ++FG T Sbjct: 68 YLDGNGIPYKLSADGQSISVPSAVATRTRVDVGSQGLVQNGS-IGFEAFEGGSAFGQTEN 126 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMIR---AI 180 + + AL GE+ + + + G+ +++V I +P F + + +AS+M+ Sbjct: 127 EFNVKYINALNGEVQQLLNRMQGVQSSKVLINLPKESVFLTPEEKEQASASIMMNFTPGY 186 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS-------LSI 233 PS + + +LV AVP L + D+T+ G+L+++ E++ N +G + I Sbjct: 187 RPS-QQEVDGYYNLVKTAVPKLAVQDITISSPQGELVSS-EIDGNKIGAATDAAESHFMI 244 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-DSKVERSIRLSK 292 + + E++ NI + L+ LG DN +V + N D + +E + P ++ I +S+ Sbjct: 245 QRKYEAEVKKNIQQFLSPMLG-DNLVISVASSFNFDKKVTQENLVRPLENNNNNGIIVSE 303 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQS----NYEINTKSIATT 348 S T+ + + + VP + +NT+ EQS NY+ + + Sbjct: 304 QQDNSTTTNGSANAG---GVAGTGETDVPGYTATDNTNGSSEQSSRVTNYDYDRINNQIE 360 Query: 349 HDNYKLERLSIAVVVNKGRLTE 370 Y+L+ LSI++ V + +LT+ Sbjct: 361 SAPYQLKDLSISIGVEQSKLTD 382 >gi|187778748|ref|ZP_02995221.1| hypothetical protein CLOSPO_02343 [Clostridium sporogenes ATCC 15579] gi|187772373|gb|EDU36175.1| hypothetical protein CLOSPO_02343 [Clostridium sporogenes ATCC 15579] Length = 526 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 104/437 (23%), Positives = 196/437 (44%), Gaps = 60/437 (13%) Query: 4 LDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 +++L +FFK T + + + + + L I +A + Y L+ ++ +D Sbjct: 1 MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + L + ++ ++ G++I VP V + R+ + ++ +P ++ + G+E+ DK + Sbjct: 61 SGAVLQKLKDKKVEAKVE--GNNILVPKDQVDELRMQMLSE-VPLTNGSQGFEILDK-SQ 116 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-- 177 FG T +I RAL+GE+ RTI+ + +RVH+V+P+ +F K ASV + Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNSRVHLVLPEETAFVKETQPGRASVTLNL 176 Query: 178 ---RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIV 234 + I+ KS I LV+ +V N+ +V V+D+ LLT +N+ S S+ Sbjct: 177 KKGQTISKEQVKS---IVALVSGSVKNIPKENVEVIDNNMNLLT-----KNLFDASGSLE 228 Query: 235 QAI-----QHEIEMNINK--------ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD 281 +A Q +++ N K L A G D + + +L+ D + + YDP Sbjct: 229 EATTSAEKQQQLQKNYEKDLQNRLVSMLEAVYGKDKVKVNINTDLDFDAVKTNSVTYDPK 288 Query: 282 SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEIN 341 + V + + Q + + V+ NM + R E + + E NYEI+ Sbjct: 289 NVVVSEHSIKEKNQNNADGNNTNGSIVDNNMVN---RTTQNNNGSETSSRDETTKNYEIS 345 Query: 342 TKSIATTHDNYK----LERLSIAVVVNKGRLTEVLGRSADQGKIDSYL-AEINKIVSAAT 396 T D+ K ++RL+ ++V++ G ID + + +A Sbjct: 346 ----KTQQDSIKAPGSVKRLTASIVLD--------------GNIDEETRTAVRNLAVSAI 387 Query: 397 GINSRRGDTITITSMDF 413 G + +RGD I+I + F Sbjct: 388 GYDEKRGDAISIEGLPF 404 >gi|295319980|gb|ADG00358.1| fliF; flagellar M-ring protein FliF [Clostridium botulinum F str. 230613] Length = 526 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 106/435 (24%), Positives = 198/435 (45%), Gaps = 56/435 (12%) Query: 4 LDQLLQFFK----SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 +++L +FFK T + + + + + L I +A + Y L+ ++ +D Sbjct: 1 MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + L + ++ ++ G++I VP V + R+ + ++ +P ++ + G+E+ DK + Sbjct: 61 SGTVLQKLKDKKVEAKVE--GNNILVPKDKVDELRMQMLSE-VPLTNGSQGFEILDK-SQ 116 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 FG T +I RAL+GE+ RTI+ + +RVH+V+P+ +F K ASV + Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNSRVHLVLPEETAFVKETQPGRASVTLNL 176 Query: 180 INPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI 237 + ++I LV+ +V N+ +V V+D+ LLT +N+ S S+ +A Sbjct: 177 KQGQTLSKEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLT-----KNLFDASGSLEEAT 231 Query: 238 -----QHEIEMNINK--------ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV 284 Q +++ N K L A G D + + +L+ D + + YDP + V Sbjct: 232 TSAEKQQQLQKNYEKDLQNRLVSMLEAVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNVV 291 Query: 285 --ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINT 342 E SI+ + S V+ NM + R E + + E NYEI+ Sbjct: 292 VSEHSIKEKNQNNAGGNNTNGSV--VDNNMVN---RTTQNNNGSETSSRDENTKNYEIS- 345 Query: 343 KSIATTHDNYK----LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 T D+ K ++RL+ ++V++ G + E RSA + + +A G Sbjct: 346 ---KTQQDSIKAPGSVKRLTASIVLD-GNIDEET-RSA-----------VRNLAVSAIGY 389 Query: 399 NSRRGDTITITSMDF 413 + +RGDTI + + F Sbjct: 390 DEKRGDTINVEGLPF 404 >gi|212639567|ref|YP_002316087.1| flagellar MS-ring protein [Anoxybacillus flavithermus WK1] gi|212561047|gb|ACJ34102.1| Flagellar basal body M-ring protein FliF [Anoxybacillus flavithermus WK1] Length = 529 Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 76/289 (26%), Positives = 141/289 (48%), Gaps = 15/289 (5%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 +++L F+ T + L L +++V + L FF ++ LY L + +I Sbjct: 9 IERLKLFWSERTKQQKMMALGLIGLLVVSVAL---TAFFATRTNFVPLYSNLSPQEAGQI 65 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L + I +I+DNG++I VP +V ++ LAA+G+P S S Y F K + FG+T Sbjct: 66 KATLDQRGIKSQITDNGTTILVPEQLVNTLKVELAAEGIPDSGS-IDYSFFGKNSGFGMT 124 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG-ARPTASVMIRAINP 182 + ++ A++ E+A I+SI G+ A+V I +P F +G + AS I Sbjct: 125 DNEFNVLKIEAMQTELANLIKSIDGVEDAKVMINLPQPTIF--VGDQQEEASASIVLKTK 182 Query: 183 SVYKSAE----AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS----IV 234 + YK E ++ HLV+ +VPNL ++ +++ + E GK+ + + Sbjct: 183 AGYKFNEQQIKSLYHLVSKSVPNLPTDNIVIMNQYFEYFDLKNEENFSSGKTFAEQYEVK 242 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK 283 Q I+ +I+ + + L +G D +V A+++ + +E + +P K Sbjct: 243 QQIERDIQRRVQQMLGTMIGQDKVVVSVTADVDFTQENRQEELVEPVDK 291 >gi|126697819|ref|YP_001086716.1| flagellar MS-ring protein [Clostridium difficile 630] gi|115249256|emb|CAJ67069.1| Flagellar M-ring protein FliF [Clostridium difficile] Length = 516 Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 110/414 (26%), Positives = 184/414 (44%), Gaps = 53/414 (12%) Query: 20 TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN 79 T+I + VI + + L A + Y L+ +L+ D IS L ID ++ Sbjct: 27 TKIALGIGVIAICLALVFTA-ISASKNKYAVLFSELDAQDAADISAELESKKIDTKV--K 83 Query: 80 GSSISVPSSMVGKARIHLAAQGLPSSSSNS-GYELFDKVNSFGLTSFMQEITRVRALEGE 138 GS+I VP + V K R+ LA PS + S G+ L D +S GLT +I + R ++GE Sbjct: 84 GSTIYVPRTEVDKLRLELA----PSLTGGSKGFALMDDSSSIGLTDEEFQIKKQRMIQGE 139 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRH---LV 195 I +TI+S + RVHI + F K A P ++ + + P I+ L+ Sbjct: 140 IEKTIKSFPQVEDTRVHITFGESSVFEK-EAVPGSAAVYLMLKPGTTLEKNQIKSVMALI 198 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEME-RNI------------LGKSLSIVQAIQHEIE 242 + +V N+ +V V+D+ LL+ +E N+ + K+ + QA+ ++E Sbjct: 199 SGSVTNIPEKNVQVIDNKMNLLSEGILEDENVDENNQPINSGISVDKNKASEQALNKQLE 258 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS-- 300 +I + L G ++ V A+L+ DT + EI DPD + R SK++ +S + Sbjct: 259 KSILEMLEPIFGKGKVKATVNADLSFDTAEKTEIKIDPDKVAIKETR-SKNSSKSAANNV 317 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 Q A Q + ++ + L S E Y+ ++ Sbjct: 318 QGVDANMNNQGNNNGTNTEDSLDESFE------------------------YETGKIETH 353 Query: 361 VVVNKGRLTEVLGRSADQGKI-DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 +V G L + A GKI A++ IV+ A G++ RGDT+++ SM F Sbjct: 354 TIVAPGELNRLTASVAIDGKIAKGVQADVEDIVNNAIGMDGARGDTLSVVSMVF 407 >gi|289670544|ref|ZP_06491619.1| flagellar MS-ring protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 335 Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/212 (30%), Positives = 112/212 (52%), Gaps = 2/212 (0%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 Q+F SL TR L + ++I + + +A F+ P Y +LY L+ + L Sbjct: 19 QWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAADLLR 78 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 A I ++I +ISVP + AR+ LA GL + G+EL +K FG++ F++ Sbjct: 79 TAQIPYKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQFVEN 138 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYK 186 ALE E++RTI ++ + ARVH+ +P +F + +ASV+ +R Sbjct: 139 ARYQHALETELSRTISTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQGLERN 198 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 +AI +LVA+++P++ VTV+D +G++L+ Sbjct: 199 QVDAIVNLVASSIPDMTPERVTVVDQSGRMLS 230 >gi|168183269|ref|ZP_02617933.1| flagellar M-ring protein FliF [Clostridium botulinum Bf] gi|237796102|ref|YP_002863654.1| flagellar MS-ring protein [Clostridium botulinum Ba4 str. 657] gi|182673721|gb|EDT85682.1| flagellar M-ring protein FliF [Clostridium botulinum Bf] gi|229262258|gb|ACQ53291.1| flagellar M-ring protein FliF [Clostridium botulinum Ba4 str. 657] Length = 526 Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 108/436 (24%), Positives = 200/436 (45%), Gaps = 58/436 (13%) Query: 4 LDQLLQFFK----SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 +++L +FFK T + + + + + L I +A + Y L+ ++ +D Sbjct: 1 MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + L + ++ ++ G++I VP V + R+ + ++ +P ++ + G+E+ DK + Sbjct: 61 SGTVLQKLKDKKVEAKVE--GNNILVPKDQVDELRMQMLSE-VPLTNGSQGFEILDK-SQ 116 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-- 177 FG T +I RAL+GE+ RTI+ + RVH+V+P+ +F K ASV + Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNTRVHLVLPEETAFVKETQPGRASVTLNL 176 Query: 178 -RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQA 236 + N S + ++I LV+ +V N+ +V V+D+ LLT +N+ S S+ +A Sbjct: 177 KQGQNLS-KEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLT-----KNLFDASGSLEEA 230 Query: 237 I-----QHEIEMNINK--------ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK 283 Q +++ N K L A G D + + +L+ D + + YDP + Sbjct: 231 TTSAEKQQQLQKNYEKDLQNRLVSMLEAVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNV 290 Query: 284 V--ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEIN 341 V E SI+ + S V+ NM + R E + + E NYEI+ Sbjct: 291 VVSEHSIKEKNQNNAGGNNTNGSV--VDNNMVN---RTTQNNNGSETSSRDENTKNYEIS 345 Query: 342 TKSIATTHDNYK----LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG 397 T D+ K ++RL+ ++V++ G + E RSA + + +A G Sbjct: 346 ----KTQQDSIKAPGSVKRLTASIVLD-GNIDEET-RSA-----------VRNLAVSAIG 388 Query: 398 INSRRGDTITITSMDF 413 + +RGDTI + + F Sbjct: 389 YDEKRGDTINVEGLPF 404 >gi|170755222|ref|YP_001782279.1| flagellar MS-ring protein [Clostridium botulinum B1 str. Okra] gi|169120434|gb|ACA44270.1| flagellar M-ring protein FliF [Clostridium botulinum B1 str. Okra] Length = 526 Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 106/435 (24%), Positives = 197/435 (45%), Gaps = 56/435 (12%) Query: 4 LDQLLQFFK----SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 +++L +FFK T + + + + + L I +A + Y L+ ++ +D Sbjct: 1 MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + L + ++ ++ G++I VP V + R+ + ++ +P ++ + G+E+ DK + Sbjct: 61 SGTVLQKLKDKKVEAKVE--GNNILVPKDKVDELRMQMLSE-VPLTNGSQGFEILDK-SQ 116 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 FG T +I RAL+GE+ RTI+ + RVH+V+P+ +F K ASV + Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNTRVHLVLPEETAFVKETQPGRASVTLNL 176 Query: 180 INPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI 237 + ++I LV+ +V N+ +V V+D+ LLT +N+ S S+ +A Sbjct: 177 KQGQTLSKEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLT-----KNLFDASGSLEEAT 231 Query: 238 -----QHEIEMNINK--------ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV 284 Q +++ N K L A G D + + +L+ D + + YDP + V Sbjct: 232 TSAEKQQQLQKNYEKDLQNRLVSMLEAVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNVV 291 Query: 285 --ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINT 342 E SI+ + S V+ NM + R E + + E NYEI+ Sbjct: 292 VSEHSIKEKNQNNAGGNNTNGSV--VDNNMVN---RTTQNNNGSETSSRDENTKNYEIS- 345 Query: 343 KSIATTHDNYK----LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 T D+ K ++RL+ ++V++ G + E RSA + + +A G Sbjct: 346 ---KTQQDSIKAPGSVKRLTASIVLD-GNIDEET-RSA-----------VRNLAVSAIGY 389 Query: 399 NSRRGDTITITSMDF 413 + +RGDTI + + F Sbjct: 390 DEKRGDTINVEGLPF 404 >gi|212634367|ref|YP_002310892.1| flagellar MS-ring protein [Shewanella piezotolerans WP3] gi|212555851|gb|ACJ28305.1| Flagellar FliF M-ring protein [Shewanella piezotolerans WP3] Length = 531 Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 108/445 (24%), Positives = 200/445 (44%), Gaps = 25/445 (5%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y L ++ ++ ++ L + I ++I G + VP ++ L+ Sbjct: 23 IWAQEPEYRPLG-QMSTQEMVQVLDELDKNKIKYQI--QGDVVKVPEDKYQDVKMMLSRA 79 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GL +++N Y K + FG++ M++ + E +AR I+ + + A+V + +P Sbjct: 80 GLDQAAANDDY--LSKDSGFGVSQRMEQARLKHSQEQNLARAIEELKSVSRAKVILALPK 137 Query: 161 MGSFRKIGARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + ++P+A+V++ + + ++I +VA+AV NL+ VTV DS G+LL + Sbjct: 138 ENVFARNRSKPSATVVVNTRRGGLGQEEVDSIVDIVASAVHNLEPNKVTVTDSNGRLLNS 197 Query: 220 NEME--RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 + I + L IVQ + E + L LG +NF S V +++MD + + Sbjct: 198 GSQDGVSAIARRELEIVQQKESEYRNKVESILMPILGPENFTSQV--DVSMDFTAVEQTA 255 Query: 278 --YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT------ 329 Y+PD RS + ++ T+ Q P SD +P E T Sbjct: 256 KRYNPDLPALRSEMVVENNSNGGTTGGIPGALSNQP-PMNSD--IPQEVGTETTSVSSGS 312 Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN-KGRLTEVLGRSADQGKIDSYLAEI 388 KE N+E++T T L R+S++V V+ K G + + + LA I Sbjct: 313 SHKEATRNFELDTTISHTRQQIGTLRRVSVSVAVDFKNAPAAEDGSVSRVPRTEQELANI 372 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 +++ A G N++RGD I + ++ F++ + ++ ++ R + LV L Sbjct: 373 RRLLEGAVGFNTQRGDMIEVVTVPFMDQLIEDAPAPEMWEQPWFWRAVKLGLGTLVALA- 431 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGE 473 +V F+ L+R+ D AK E Sbjct: 432 --IVMFIISPMLKRIVYPDSAKLPE 454 >gi|326796470|ref|YP_004314290.1| flagellar M-ring protein FliF [Marinomonas mediterranea MMB-1] gi|326547234|gb|ADZ92454.1| flagellar M-ring protein FliF [Marinomonas mediterranea MMB-1] Length = 558 Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 101/392 (25%), Positives = 182/392 (46%), Gaps = 23/392 (5%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + + P Y + + + ++I L+ +I F++ N ++ V +AR+ LA Sbjct: 48 LWSSGPDYKPVLSSITDYNADQIVEILNTNSIPFKLDQNTGALLVEDEYYHQARLKLAGS 107 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 G+ S G E+ D+ + G + F++ R LEGE++RTI S+ + +ARVH+ +P Sbjct: 108 GI-VSDKIVGLEIMDQDQALGTSQFIETARYRRGLEGELSRTITSLQSVKSARVHLAIPK 166 Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F + +PTASV + R ++ S +AI +LVA+++ L DVTV+D G Sbjct: 167 ESVFVRDTRKPTASVFLELYPGRRLDRS---QVDAIVNLVASSISQLSDKDVTVVDQRGT 223 Query: 216 LLTANE--MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI 273 LLT + E +I GK + ++ + +N L +G F++ V A+++ + Sbjct: 224 LLTDKDSSSELSIAGKQFDYTRRVEEVMLRRVNNILMPVVGSGRFKAEVSADIDFTAVEQ 283 Query: 274 REIVYDPDSKVERSIRLSKDAQRSE----------TSQPESAVTV-EQNMPHVSDRKVPL 322 + Y+PD RS + K+ + S T+QP A+ EQ + + Sbjct: 284 TDEQYNPDLLALRSEQTLKERRSSAGGNNGVPGALTNQPPGAINAPEQAAVNGAPIGGGS 343 Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI- 381 S K+E N+E++ T + RLS+AVVV+ ++ Sbjct: 344 GSSGTGQSKEETTRNFELDRSISYTKRQQGTVRRLSVAVVVDDVASLNTETSEIERAPWS 403 Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 D L+ + +V A G + RGD++++ + F Sbjct: 404 DEELSRLTLLVRDAVGYDPSRGDSVSVINSPF 435 >gi|168180913|ref|ZP_02615577.1| flagellar M-ring protein fliF [Clostridium botulinum NCTC 2916] gi|182668331|gb|EDT80310.1| flagellar M-ring protein fliF [Clostridium botulinum NCTC 2916] Length = 526 Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 106/435 (24%), Positives = 197/435 (45%), Gaps = 56/435 (12%) Query: 4 LDQLLQFFK----SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 +++L +FFK T + + + + + L I +A + Y L+ ++ +D Sbjct: 1 MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + L + ++ ++ G++I VP V + R+ + ++ +P ++ + G+E+ DK + Sbjct: 61 SGTVLQKLKDKKVEAKVE--GNNILVPKDKVDELRMQMLSE-VPLTNGSQGFEILDK-SQ 116 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 FG T +I RAL+GE+ RTI+ + RVH+V+P+ +F K ASV + Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNTRVHLVLPEETAFVKETQPGRASVTLNL 176 Query: 180 INPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI 237 + ++I LV+ +V N+ +V V+D+ LLT +N+ S S+ +A Sbjct: 177 KQGQTLSKEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLT-----KNLFDASGSLEEAT 231 Query: 238 -----QHEIEMNINK--------ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV 284 Q +++ N K L A G D + + +L+ D + + YDP + V Sbjct: 232 TSAEKQQQLQKNYEKDLQNRLVSMLEAVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNVV 291 Query: 285 --ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINT 342 E SI+ + S V+ NM + R E + + E NYEI+ Sbjct: 292 VSEHSIKEKNQNNAGGNNTNGSV--VDNNMVN---RTTQNNNGSETSSRDENTKNYEIS- 345 Query: 343 KSIATTHDNYK----LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 T D+ K ++RL+ ++V++ G + E RSA + + +A G Sbjct: 346 ---KTQQDSIKAPGSVKRLTASIVLD-GNIDEET-RSA-----------VRNLAVSAIGY 389 Query: 399 NSRRGDTITITSMDF 413 + +RGDTI + + F Sbjct: 390 DEKRGDTINVEGLPF 404 >gi|226950075|ref|YP_002805166.1| flagellar M-ring protein fliF [Clostridium botulinum A2 str. Kyoto] gi|226842546|gb|ACO85212.1| flagellar M-ring protein fliF [Clostridium botulinum A2 str. Kyoto] Length = 526 Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 108/436 (24%), Positives = 200/436 (45%), Gaps = 58/436 (13%) Query: 4 LDQLLQFFK----SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 +++L +FFK T + + + + + L I +A + Y L+ ++ +D Sbjct: 1 MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + L + ++ ++ G++I VP V + R+ + ++ +P ++ + G+E+ DK + Sbjct: 61 SGTVLQKLKDKKVEAKVE--GNNILVPKDKVDELRMQMLSE-VPLTNGSQGFEILDK-SQ 116 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-- 177 FG T +I RAL+GE+ RTI+ + RVH+V+P+ +F K ASV + Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNTRVHLVLPEETAFVKETQPGRASVTLNL 176 Query: 178 -RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQA 236 + N S + ++I LV+ +V N+ +V V+D+ LLT +N+ S S+ +A Sbjct: 177 KQGQNLS-KEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLT-----KNLFDASGSLEEA 230 Query: 237 I-----QHEIEMNINK--------ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK 283 Q +++ N K L A G D + + +L+ D + + YDP + Sbjct: 231 TTSAEKQQQLQKNYEKDLQNRLVSMLEAVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNV 290 Query: 284 V--ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEIN 341 V E SI+ + S V+ NM + R E + + E NYEI+ Sbjct: 291 VVSEHSIKEKNQNNAGGNNTNGSV--VDNNMVN---RTTQNNNGSETSSRDENTKNYEIS 345 Query: 342 TKSIATTHDNYK----LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG 397 T D+ K ++RL+ ++V++ G + E RSA + + +A G Sbjct: 346 ----KTQQDSIKAPGSVKRLTASIVLD-GNIDEET-RSA-----------VRNLAVSAIG 388 Query: 398 INSRRGDTITITSMDF 413 + +RGDTI + + F Sbjct: 389 YDEKRGDTINVEGLPF 404 >gi|148380620|ref|YP_001255161.1| flagellar MS-ring protein [Clostridium botulinum A str. ATCC 3502] gi|153933327|ref|YP_001384906.1| flagellar MS-ring protein [Clostridium botulinum A str. ATCC 19397] gi|153935162|ref|YP_001388375.1| flagellar MS-ring protein [Clostridium botulinum A str. Hall] gi|148290104|emb|CAL84223.1| flagellar M-ring protein [Clostridium botulinum A str. ATCC 3502] gi|152929371|gb|ABS34871.1| flagellar M-ring protein FliF [Clostridium botulinum A str. ATCC 19397] gi|152931076|gb|ABS36575.1| flagellar M-ring protein FliF [Clostridium botulinum A str. Hall] Length = 526 Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 106/435 (24%), Positives = 197/435 (45%), Gaps = 56/435 (12%) Query: 4 LDQLLQFFK----SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 +++L +FFK T + + + + + L I +A + Y L+ ++ +D Sbjct: 1 MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + L + ++ ++ G++I VP V + R+ + ++ +P ++ + G+E+ DK + Sbjct: 61 SGTVLQKLKDKKVEAKVE--GNNILVPKDKVDELRMQMLSE-VPLTNGSQGFEILDK-SQ 116 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 FG T +I RAL+GE+ RTI+ + RVH+V+P+ +F K ASV + Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNTRVHLVLPEETAFVKETQPGRASVTLNL 176 Query: 180 INPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI 237 + ++I LV+ +V N+ +V V+D+ LLT +N+ S S+ +A Sbjct: 177 KQGQTLSKEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLT-----KNLFDASGSLEEAT 231 Query: 238 -----QHEIEMNINK--------ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV 284 Q +++ N K L A G D + + +L+ D + + YDP + V Sbjct: 232 TSAEKQQQLQKNYEKDLQNRLVSMLEAVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNVV 291 Query: 285 --ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINT 342 E SI+ + S V+ NM + R E + + E NYEI+ Sbjct: 292 VSEHSIKEKNQNNAGGNNTNGSV--VDNNMVN---RTTQNNNGSETSSRDENTKNYEIS- 345 Query: 343 KSIATTHDNYK----LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 T D+ K ++RL+ ++V++ G + E RSA + + +A G Sbjct: 346 ---KTQQDSIKAPGSVKRLTASIVLD-GNIDEET-RSA-----------VRNLAVSAIGY 389 Query: 399 NSRRGDTITITSMDF 413 + +RGDTI + + F Sbjct: 390 DEKRGDTINVEGLPF 404 >gi|322806993|emb|CBZ04563.1| flagellar M-ring protein FliF [Clostridium botulinum H04402 065] Length = 526 Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 106/435 (24%), Positives = 197/435 (45%), Gaps = 56/435 (12%) Query: 4 LDQLLQFFK----SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 +++L +FFK T + + + + + L I +A + Y L+ ++ +D Sbjct: 1 MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + L + ++ ++ G++I VP V + R+ + ++ +P ++ + G+E+ DK + Sbjct: 61 SGTVLQKLKDKKVEAKVE--GNNILVPKDKVDELRMQMLSE-VPLTNGSQGFEILDK-SQ 116 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 FG T +I RAL+GE+ RTI+ + RVH+V+P+ +F K ASV + Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNTRVHLVLPEETAFVKETQPGRASVTLNL 176 Query: 180 INPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI 237 + ++I LV+ +V N+ +V V+D+ LLT +N+ S S+ +A Sbjct: 177 KQGQTLSKEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLT-----KNLFDASGSLEEAT 231 Query: 238 -----QHEIEMNINK--------ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV 284 Q +++ N K L A G D + + +L+ D + + YDP + V Sbjct: 232 TSAEKQQQLQKNYEKDLQNRLVSMLEAVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNVV 291 Query: 285 --ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINT 342 E SI+ + S V+ NM + R E + + E NYEI+ Sbjct: 292 VSEHSIKEKNQNNAGGNNTNGSV--VDNNMVN---RTTQNNNGSETSSRDENTKNYEIS- 345 Query: 343 KSIATTHDNYK----LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 T D+ K ++RL+ ++V++ G + E RSA + + +A G Sbjct: 346 ---KTQQDSIKAPGSVKRLTASIVLD-GNIDEET-RSA-----------VRNLAVSAIGY 389 Query: 399 NSRRGDTITITSMDF 413 + +RGDTI + + F Sbjct: 390 DEKRGDTINVEGLPF 404 >gi|258622516|ref|ZP_05717538.1| flagellar M-ring protein [Vibrio mimicus VM573] gi|258585216|gb|EEW09943.1| flagellar M-ring protein [Vibrio mimicus VM573] Length = 585 Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 115/497 (23%), Positives = 227/497 (45%), Gaps = 53/497 (10%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 ++D+L Q + S R L+L++V+ + + + + ++ LY + E D+ Sbjct: 31 LIDKLKQLWSSSQ-----RNLVLSAVLAAIVAAIIVVALWSSVQNFRPLYSQQERFDIGE 85 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L I +R+ + + V V + R+ LA +G+ + +G++ + +S G Sbjct: 86 IVSVLESEGISYRMQEENGQVLVQEGEVARIRMLLATKGVKAKLP-TGFDSLKEDSSLGT 144 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMI---- 177 + FM+ LEGE+ RTI S++ + ARVH+ +P+ F R+ P+ASV++ Sbjct: 145 SQFMETARYRHGLEGELVRTILSLNAVTNARVHLAIPNQTLFVRQNRENPSASVLLELKP 204 Query: 178 -RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSI 233 + + P + EAI +LV +V + V+V+D G+LL+A+ E + K L Sbjct: 205 GKNLKP---QQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLSADVTSAAEGEVNAKYLEY 261 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293 + ++ +I L +G NFR V A+++ + E + D D+ V R Sbjct: 262 QKNVEKQIIQRAADMLTPIVGPTNFRIQVAADMDFSQVEETEEILD-DTPVVRD------ 314 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPL--------PRSLENTDKKEE-QSNYEINTKS 344 T Q S + +P + P+ + +NT+ + E Y + + Sbjct: 315 ---EHTIQNNSVDQIALGVPGSLSNQPPITGKAGEKQTKDSQNTNARSEVNRQYAVGSNI 371 Query: 345 IATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK--IDSYLAEINKIVSAATGINSRR 402 T + ++++LS++V++N ++A GK + +I+ +V A G++ R Sbjct: 372 RRTQYQQGQIKKLSVSVLLN--------SQAAPNGKAWTSAEKKQISTMVMDAVGVSQGR 423 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN-----ALVFLVGTLLVTFLGL 457 GD++++ S +F + + T+ + + VI A++F V L+ L Sbjct: 424 GDSLSLMSFNFTPIDIEAAPTIPWWQDPTVQQPMRYVIGGMLGIAMIFFVLRPLIMHL-T 482 Query: 458 HALRRLHNIDDAKKGEV 474 A RR+ ++ A++ E+ Sbjct: 483 GADRRVQELEFAEQEEL 499 >gi|325926946|ref|ZP_08188226.1| flagellar basal-body M-ring protein/flagellar hook-basal body protein FliF [Xanthomonas perforans 91-118] gi|325542683|gb|EGD14145.1| flagellar basal-body M-ring protein/flagellar hook-basal body protein FliF [Xanthomonas perforans 91-118] Length = 687 Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 65/212 (30%), Positives = 112/212 (52%), Gaps = 2/212 (0%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 Q+F SL TR L + ++I + + +A F+ P Y +LY L+ + L Sbjct: 19 QWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAADLLR 78 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 A I ++I +ISVP + AR+ LA GL + G+EL +K FG++ F++ Sbjct: 79 TAQIPYKIDQATGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQFVEN 138 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYK 186 ALE E++RTI ++ + ARVH+ +P +F + +ASV+ +R Sbjct: 139 ARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQGLERN 198 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 +AI +LVA+++P++ VTV+D +G++L+ Sbjct: 199 QVDAIVNLVASSIPDMTPERVTVVDQSGRMLS 230 >gi|283955204|ref|ZP_06372705.1| flagellar M-ring protein [Campylobacter jejuni subsp. jejuni 414] gi|283793241|gb|EFC32009.1| flagellar M-ring protein [Campylobacter jejuni subsp. jejuni 414] Length = 560 Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 100/369 (27%), Positives = 174/369 (47%), Gaps = 33/369 (8%) Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L + NI +++ ++ + I VP V + R+ +A++GL S G+E FD +FG Sbjct: 68 IVAKLEQNNIPYKL-ESENKILVPQDQVYRQRMFIASEGL-IKDSRVGFEAFD-TQAFGA 124 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAI 180 TS Q++ RA+EGE+ARTI+++ I A VHI P F + PTASV+ +R Sbjct: 125 TSEEQKVKYQRAIEGELARTIETLEPIRNAVVHIAFPKDSVFTERQIPPTASVVVNVREG 184 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQH 239 K + I+++V+AAVP L +V + D +G L E E +++ + + Sbjct: 185 LKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIKFKSDQEK 244 Query: 240 EIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 +E I + LA F G+D + +V + + Q+ + +YDP+ V L++ +++ Sbjct: 245 ALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLNE--EKTG 302 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEIN----TKSIATTHDNYKL 354 PE Q +P P +E D K + Y+ N ++ T N K Sbjct: 303 RKDPEI-----QGVPGAVSNIGP----VEGLDNKGQIDTYKKNQVTTNNELSKTITNIKK 353 Query: 355 E-----RLSIAVVVNKGRLTEVLGRSADQGK-----IDSYLAEINKIVSAATGINSRRGD 404 + R S AV ++ G+ +V+ + D LA + IV ++ RGD Sbjct: 354 QFATVLRTSAAVTID-GKYQDVVDENGDVKSEYVPLTKEELASVESIVKNTINFSATRGD 412 Query: 405 TITITSMDF 413 ++ + ++ F Sbjct: 413 SVVVQNLPF 421 >gi|170760264|ref|YP_001787983.1| flagellar MS-ring protein [Clostridium botulinum A3 str. Loch Maree] gi|169407253|gb|ACA55664.1| flagellar M-ring protein FliF [Clostridium botulinum A3 str. Loch Maree] Length = 526 Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 105/435 (24%), Positives = 198/435 (45%), Gaps = 56/435 (12%) Query: 4 LDQLLQFFK----SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 +++L +FFK T + + + + + L I +A + Y L+ ++ +D Sbjct: 1 MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + L + ++ ++ G++I VP V + R+ + ++ +P ++ + G+E+ DK + Sbjct: 61 SGTVLQKLKDKKVEAKVE--GNNILVPKDKVDELRMQMLSE-VPLTNGSQGFEILDK-SQ 116 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 FG T +I RAL+GE+ RTI+ + RVH+V+P+ +F K ASV + Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNTRVHLVLPEETAFVKETQPGRASVTLNL 176 Query: 180 INPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI 237 + ++I LV+ +V N+ +V V+D+ LLT +N+ S S+ +A Sbjct: 177 KQGQTLSKEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLT-----KNLFDASGSLEEAT 231 Query: 238 -----QHEIEMNINK--------ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV 284 Q +++ N K L + G D + + +L+ D + + YDP + V Sbjct: 232 TSAEKQQQLQKNYEKDLQNRLVSMLESVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNVV 291 Query: 285 --ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINT 342 E SI+ + S V+ NM + R E + + E NYEI+ Sbjct: 292 VSEHSIKEKNQNNAGGNNTNGSV--VDNNMVN---RTTQNNNGSETSSRDENTKNYEIS- 345 Query: 343 KSIATTHDNYK----LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 T D+ K ++RL+ ++V++ G + E RSA + + +A G Sbjct: 346 ---KTQQDSIKAPGSVKRLTASIVLD-GNIDEET-RSA-----------VRNLAVSAIGY 389 Query: 399 NSRRGDTITITSMDF 413 + +RGDTI++ + F Sbjct: 390 DEKRGDTISVEGLPF 404 >gi|331005448|ref|ZP_08328827.1| Flagellar M-ring protein fliF [gamma proteobacterium IMCC1989] gi|330420724|gb|EGG95011.1| Flagellar M-ring protein fliF [gamma proteobacterium IMCC1989] Length = 469 Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 69/199 (34%), Positives = 109/199 (54%), Gaps = 6/199 (3%) Query: 22 ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81 IL + S+IL+ I+L A++ +N +Y +L+V LE D I L ++RI+ Sbjct: 12 ILAVVSIILL-IILGFTAQWALNK-NYQSLFVGLEPKDSAAIVQQLDALKAEYRINKETG 69 Query: 82 SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 ++ VPSS V R+ L + + S GYE+FD + FG+T F Q I RALEGE+ R Sbjct: 70 NVEVPSSQVHSTRLQLMGTDV-TISGGVGYEIFDN-SDFGMTEFAQRINYQRALEGELQR 127 Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASV--MIRAINPSVYKSAEAIRHLVAAAV 199 TI S+S + +RVH+V+P+ FR+ +P+ASV +++ I+ LV+++V Sbjct: 128 TITSLSQVKKSRVHLVLPERSLFRENKEQPSASVTLIVKKGMSLTGTQISGIQRLVSSSV 187 Query: 200 PNLDMGDVTVLDSTGKLLT 218 L V + D G L+ Sbjct: 188 SGLKEPMVIINDQQGVTLS 206 >gi|307293804|ref|ZP_07573648.1| flagellar M-ring protein FliF [Sphingobium chlorophenolicum L-1] gi|306879955|gb|EFN11172.1| flagellar M-ring protein FliF [Sphingobium chlorophenolicum L-1] Length = 587 Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 106/429 (24%), Positives = 202/429 (47%), Gaps = 47/429 (10%) Query: 38 AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97 AA + P +L+ L +D + ++ L ++ I + DN ++V KA++ L Sbjct: 68 AAWLALREPPQRDLFRALPDADKSAVAQVLDQSGIRYDF-DNSGGMTVGEDDYFKAKMML 126 Query: 98 AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 AAQGLP S+ + G + D + G + ++ A E ++ARTI++I + +A+VH+ Sbjct: 127 AAQGLPKSAPD-GNSMIDSL-PMGASRAVEGEKLRSAREMDLARTIEAIDSVESAKVHLA 184 Query: 158 MPDMGSFRKIGARPTASVMIR-AINPSVY-KSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 + F + ++P+ASVM+R A S+ + AI HLVA+++P L+ D++V+D G+ Sbjct: 185 VEPPSVFLRERSKPSASVMLRLASGRSLTDQQVSAIVHLVASSIPELNPEDISVVDQNGR 244 Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LL+ N+ + L++ ++ ++ L LG F + V AELN +Q Sbjct: 245 LLSNNDGN-AADDRQLAVQTKMEDRYRQSVIALLTPILGAGKFSTEVHAELNFAERQATR 303 Query: 276 IVYDPDSKVERSIRLSKDAQRSE-----------------TSQPESAVTVEQNMPH---- 314 Y D E +R + +S+ ++Q TV Q P+ Sbjct: 304 ETYPQD---EARLRTETGSWQSDPRGQGAGGEASGIPGALSNQAPVNPTVTQTNPNGQAV 360 Query: 315 ----VSDRKVPLPRSLENTDKKEEQS---NYEINTKSIATTHDNY-KLERLSIAVVVNKG 366 S + P + N K E++ ++E+ + ++ T D ++RLS+AV ++ G Sbjct: 361 AQGTQSAQTAAQPGTPGNPLMKTEETFNRSFELG-REVSVTKDAIGTVKRLSVAVALDNG 419 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 + R+A + +A + +V A G + RGD + ++S F + ++ + + Sbjct: 420 --ADGKPRTAQE------IAALEALVKGAVGFDQARGDVVALSSRSFAKEEVVEAPWYEA 471 Query: 427 SFMDILSRH 435 ++ L R+ Sbjct: 472 EWVSPLVRN 480 >gi|32266110|ref|NP_860142.1| flagellar MS-ring protein [Helicobacter hepaticus ATCC 51449] gi|32262159|gb|AAP77208.1| flagellar basal body M-ring protein FliF [Helicobacter hepaticus ATCC 51449] Length = 570 Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 120/466 (25%), Positives = 221/466 (47%), Gaps = 47/466 (10%) Query: 19 RTRILILAS-VILVPIMLFMAARFFVNSPHYDN---LYVKLEVSDVNRISVALSEANIDF 74 + RI+IL + V+L+ + ++ Y+N L+ L D I L + I + Sbjct: 20 KQRIIILTTFVVLISFLTYLVLFKVETKNEYENYEVLFSNLSAEDSALILQKLQQDKIPY 79 Query: 75 RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134 +I + + I VP V + RI L + GLP +S N G+++ + + G T F Q++ + A Sbjct: 80 KIPQD-NIIMVPKDNVYEQRITLGSLGLPKTSKNVGFDILLE-SPVGETPFTQDMKYLIA 137 Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AI 191 + E+ARTI+S+ I A V+I MP F + G P+ASV + + +++ S E + Sbjct: 138 KQNELARTIESLRPIEKAIVNISMPKESLFVQGGHPPSASVKL-TVRDNMFLSTEQVIGV 196 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSI----VQAIQHEIEMNI 245 +HLVAAAV L +V +++ G+LL + + +L K + QA ++ +E I Sbjct: 197 KHLVAAAVERLTPENVKIINQEGELLGEEDEAALQGVLAKKAAFQRRYQQAAENAMEAKI 256 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305 K L +G D ++ V + + + + +D + V R IR + +R P+ Sbjct: 257 IKFLQPSVG-DGVQAQVTMDYDFSVRNSTQEEFD-QNPVIRGIR-EYEKERKGFRPPQIG 313 Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINT-----KSIATTHDNYK-LERLSI 359 +P V P+ + L++ + E + E+ K +++ ++Y L+R+S Sbjct: 314 -----GVPGVVSNIGPV-QGLKDDEMMEWEKESEVVQNNEIGKKVSSISEHYGVLKRVSA 367 Query: 360 AVVVNKGRLTEVLGRSAD---------QGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 +V+++ G EV+G + Q +D +L + K A G N RGD + + + Sbjct: 368 SVMID-GTYEEVVGEDGETRLEYSPRSQEDMDKFLEGVKK----AIGYNEARGDQVEVIN 422 Query: 411 MDFLENQL-FNSGTVQVSFMDILSRHFATVINALVF-LVGTLLVTF 454 M F QL + +F D + R+ + + L + +V +L+ F Sbjct: 423 MPFRNTQLDYRPKDAWEAFSDKVERYLSPFMPLLKYVIVAVILLVF 468 >gi|295706285|ref|YP_003599360.1| flagellar M-ring protein FliF [Bacillus megaterium DSM 319] gi|294803944|gb|ADF41010.1| flagellar M-ring protein FliF [Bacillus megaterium DSM 319] Length = 530 Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 93/356 (26%), Positives = 168/356 (47%), Gaps = 27/356 (7%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92 +++ A F+N + LY L + +I L ++ ISDNG++ISVP V Sbjct: 35 VLVISLASVFLNQDKFVPLYSNLSAQETGQIKAELDARSVPSEISDNGTTISVPEQSVDS 94 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 ++ LAAQG+P S S Y F K SFG+T + ++ A++ E+A +++I G+ A Sbjct: 95 LKVDLAAQGIPDSGS-IDYSFFGKNASFGMTDNEFNVLKLDAMQTELANLMKNIQGVNDA 153 Query: 153 RVHIVMPDMGSF-RKIGARPTASVMIRAINPSVYK----SAEAIRHLVAAAVPNLDMGDV 207 +V I +P+ + + +AS+++ + YK +++ HLV+ +VPNL ++ Sbjct: 154 KVMITLPNESVWANEKQGEASASIVLNT--KAGYKFDDQQIKSLYHLVSKSVPNLPTDNI 211 Query: 208 TVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKA----LAAFLGVDNFRSAVV 263 +++ + E N S + + E+E +I + L +G D +V Sbjct: 212 VIMNQYFEYFDLKGNETNSASSSFASQNEAKKEVERDIQRQVQQMLGRLVGQDKVMVSVT 271 Query: 264 AELNMDTQQIREIVYDP-DSKVERSIRLSKDAQRSETSQPESAV------TVEQNMPHVS 316 A+L+ + E + +P D + I +S + + +ET E+A T E++ + S Sbjct: 272 ADLDFTQENREEKLVEPVDKDNMQGIAVSAE-KINETFSGENAQDGGVAGTGEEDTTNYS 330 Query: 317 DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN----KGRL 368 E K EE+ NYE+N YK++ L I V+++ KG+L Sbjct: 331 SSTTSGDGDYE---KNEERINYEVNRIHKEIVESPYKIQDLGIQVMIDPSNAKGKL 383 >gi|332981431|ref|YP_004462872.1| flagellar M-ring protein FliF [Mahella australiensis 50-1 BON] gi|332699109|gb|AEE96050.1| flagellar M-ring protein FliF [Mahella australiensis 50-1 BON] Length = 533 Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 94/347 (27%), Positives = 166/347 (47%), Gaps = 26/347 (7%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 Y LY L++ + I+ L E + +R + G++I VP K R+ LA QG+P + Sbjct: 51 QYTVLYSGLDIKEAGEITQKLDEMGVPWRTAAGGTAIEVPKGQDAKIRMQLATQGIPKTG 110 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-R 165 N Y+LF + ++FG T + ++ + + + +I +I G+ A V+I +P+ SF Sbjct: 111 GN--YDLFMQSSAFGTTDYKEQKLYIFQQQERLQESIMTIQGVDQAVVNISVPEKDSFVL 168 Query: 166 KIGARP-TASVMIRAINPSV-YKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE 221 K +P TASV+++ ++P V KSA+ I+ LVA +V L +VTV+D +L+ + Sbjct: 169 KNDVQPATASVLLK-LSPGVEMKSAQVSGIQQLVAKSVIGLKSENVTVIDDKANILSVEQ 227 Query: 222 MERNI--LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 E +I + + + + +Q E++ + + L G V +L+ D + I + Sbjct: 228 KEDDIRTADQQVDLEKKVQDELQQKLLQLLEPIFGPKKVVVGVGVQLDFDKRSSESIQWQ 287 Query: 280 P---DSKVERSIRLSKD------AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD 330 P D + S++ K+ A + A T Q P V D P T+ Sbjct: 288 PVLDDEGIAVSMQTIKESMINMPAGEVPGTANNGADTGGQGPPPVEDDTGNNPDGYPGTN 347 Query: 331 K------KEEQS-NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTE 370 + KEE + NYE+N KL+ ++I+VVV+ ++E Sbjct: 348 QGNSEYNKEENTINYEVNQLKQQVEEAQGKLKSMTISVVVDGENISE 394 >gi|262273540|ref|ZP_06051354.1| flagellar M-ring protein FliF [Grimontia hollisae CIP 101886] gi|262222518|gb|EEY73829.1| flagellar M-ring protein FliF [Grimontia hollisae CIP 101886] Length = 548 Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 103/380 (27%), Positives = 172/380 (45%), Gaps = 45/380 (11%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 Y LY + E D N++ AL + D+ + +I V S V ARI +AA G+ + Sbjct: 51 EYRPLYGEQEQYDRNQVIAALEQNRFDYYVEPQKGNIMVERSQVAAARIAMAAAGIEAKV 110 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 +G E+ +K + G + F++ LEGE+AR+I ++ G+ ARVH+ +P F Sbjct: 111 P-AGLEILNKDFALGTSQFIENARYRHGLEGELARSIMTLDGVSNARVHLALPKQTLF-- 167 Query: 167 IGAR---PTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE 221 +G P+ASV++ V S AI +LVA +VP+L V V+D G LL+ N+ Sbjct: 168 VGRNKELPSASVVVVLTPGRVLHSDNIAAIVNLVAGSVPDLQADRVNVIDQHGNLLS-NQ 226 Query: 222 MERNI----LGKS--LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 + + LG S LS Q ++ E + K L +GV+NF+ V A +N D + E Sbjct: 227 IGQGTGIGELGNSQYLSYTQKLEAEYIESAAKMLRPMVGVNNFQVEVAASVNFDRVEATE 286 Query: 276 IVYDPDSKVERSI-RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD---- 330 Y P V + Q+ +PE + N LP E+ D Sbjct: 287 ESYGPKGTVRNEFSSFDNEGQK----EPEGVPGTQSNR---------LPEGKEDGDGTLV 333 Query: 331 --KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 + E +Y ++ + +ERL+++V++N + D+ I Sbjct: 334 NKRGESSKDYAVDRTLKHIKYQQGSVERLTVSVLLN----------GEAESFSDAQRENI 383 Query: 389 NKIVSAATGINSRRGDTITI 408 ++ A G++ RGD +++ Sbjct: 384 RTMLIDALGLDEARGDKLSL 403 >gi|262173382|ref|ZP_06041059.1| flagellar M-ring protein FliF [Vibrio mimicus MB-451] gi|261890740|gb|EEY36727.1| flagellar M-ring protein FliF [Vibrio mimicus MB-451] Length = 585 Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 107/453 (23%), Positives = 207/453 (45%), Gaps = 48/453 (10%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 ++ LY + E D+ I L I +R+ + + V V + R+ LA +G+ + Sbjct: 70 NFRPLYSQQERFDIGEIVSVLESEGISYRMQEENGQVLVQEGEVARIRMLLATKGVKAKL 129 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-R 165 +G++ + +S G + FM+ LEGE+ RTI S++ + ARVH+ +P+ F R Sbjct: 130 P-TGFDSLKEDSSLGTSQFMETARYRHGLEGELVRTILSLNAVTNARVHLAIPNQTLFVR 188 Query: 166 KIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN 220 + P+ASV++ + + P + EAI +LV +V + V+V+D G+LL+A+ Sbjct: 189 QNRENPSASVLLELKPGKNLKP---QQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLSAD 245 Query: 221 ---EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 E + K L + ++ +I L +G NFR V A+++ + E + Sbjct: 246 VTSAAEGKVNAKYLEYQKNVEKQIIQRAADMLTPIVGPTNFRIQVAADMDFSQVEETEEI 305 Query: 278 YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPL--------PRSLENT 329 D D+ V R T Q S + +P + P+ + +NT Sbjct: 306 LD-DTPVVRD---------EHTIQNNSVDQIALGVPGSLSNQPPITGKAGEKQTKDSQNT 355 Query: 330 DKKEE-QSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK--IDSYLA 386 + + E Y + + T + ++++LS++V++N ++A GK + Sbjct: 356 NARSEVNRQYAVGSNIRRTQYQQGQIKKLSVSVLLN--------SQAAPNGKAWTSAEKK 407 Query: 387 EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN----- 441 +I+ +V A G++ RGD++++ S +F + + T+ + + VI Sbjct: 408 QISTMVMDAVGVSQGRGDSLSLMSFNFTPIDIEAAPTIPWWQDPTVQQPMRYVIGGMLGI 467 Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 A++F V L+ L A RR+ ++ A++ E+ Sbjct: 468 AMIFFVLRPLIMHL-TGADRRVQELEFAEQEEL 499 >gi|294013069|ref|YP_003546529.1| flagellar M-ring protein FliF [Sphingobium japonicum UT26S] gi|292676399|dbj|BAI97917.1| flagellar M-ring protein FliF [Sphingobium japonicum UT26S] Length = 583 Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 106/426 (24%), Positives = 199/426 (46%), Gaps = 41/426 (9%) Query: 38 AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97 AA + P +L+ L +D + ++ L + I + DN ++V KA++ L Sbjct: 64 AAWLALREPPQRDLFRALPDADKSAVAQVLDQNGIRYDF-DNSGGMTVGEDEYFKAKMML 122 Query: 98 AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 AAQGLP S+ + G + D + G + ++ A E ++ARTI++I + +A+VH+ Sbjct: 123 AAQGLPKSAPD-GNSMIDSL-PMGASRAVEGEKLRSAREMDLARTIEAIDSVESAKVHLA 180 Query: 158 MPDMGSFRKIGARPTASVMIR-AINPSVY-KSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 + F + ++P+ASVM+R A S+ + AI HLVA+++P L+ D++++D G+ Sbjct: 181 VEPPSVFLRERSKPSASVMLRLASGRSLTDQQVSAIVHLVASSIPELNPEDISLVDQNGR 240 Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LL+ N+ + L++ ++ ++ L LG F + V AELN +Q Sbjct: 241 LLSNNDGN-AADDRQLAVQTRMEDRYRQSVIALLTPILGAGKFSTEVHAELNFAERQATR 299 Query: 276 IVYDPDSKVERSIR--LSKDAQRSETSQPESAV------------TVEQNMPH------- 314 Y D RS + + D + S + TV Q P+ Sbjct: 300 ETYPQDEARLRSEQGTWASDPRGQGAGGEASGIPGALSNQAPVNPTVTQTNPNGQAVAQG 359 Query: 315 -VSDRKVPLPRSLENTDKKEEQS---NYEINTKSIATTHDNY-KLERLSIAVVVNKGRLT 369 S + P + N K E++ ++E+ + ++ T D ++RLS+AV ++ G Sbjct: 360 TESAQTAAQPGTPGNPLMKTEETFNRSFELG-REVSVTKDAVGTVKRLSVAVALDNG--P 416 Query: 370 EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFM 429 + RSA + +A + +V A G + RGD + ++S F + ++ + + ++ Sbjct: 417 DGKPRSAQE------IAALEALVKGAVGFDQARGDVVALSSRSFAKEEVVEAPWYEAQWV 470 Query: 430 DILSRH 435 L R+ Sbjct: 471 SPLVRN 476 >gi|261419419|ref|YP_003253101.1| flagellar MS-ring protein [Geobacillus sp. Y412MC61] gi|319766234|ref|YP_004131735.1| flagellar M-ring protein FliF [Geobacillus sp. Y412MC52] gi|261375876|gb|ACX78619.1| flagellar M-ring protein FliF [Geobacillus sp. Y412MC61] gi|317111100|gb|ADU93592.1| flagellar M-ring protein FliF [Geobacillus sp. Y412MC52] Length = 528 Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 88/338 (26%), Positives = 149/338 (44%), Gaps = 21/338 (6%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 FF LY L + +I L + + ++D G++I VP V ++ LAA+ Sbjct: 43 FFATRTEMVPLYSNLSPQEAGQIKATLDQRGVPAEVADGGTTIKVPKEQVDALKVELAAE 102 Query: 101 GLPSSSSNSG---YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 G+P NSG Y F + SFG+T + +++A++ E+A I++I G+ A+V I Sbjct: 103 GIP----NSGVIDYSFFGQNASFGMTDNEFNMVKLKAMQTELANLIKTIDGVEDAKVMIN 158 Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTG 214 +P F ++ ++ P S E I+ HLVA +VPNL ++ +++ Sbjct: 159 LPQPSVFVSDEKGEASASIVLKTKPGYQFSDEQIKALYHLVAKSVPNLSTDNIVIMNQFF 218 Query: 215 KLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD---TQ 271 + N G + + Q I+ +IE +I + + LG + VV + D TQ Sbjct: 219 EYYDLKNDGENSTGTTFASQQQIKKQIERDIQRQVQQLLGTMMGQDKVVVSVTADVDFTQ 278 Query: 272 QIRE--IVYDPDSKVERSIRLS----KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRS 325 + RE +V D K ++ I +S K+ + P A N V + + Sbjct: 279 EKREENLVSPVDEKTKQGIAVSVQRIKETYSGSGAPPGGAAGTGAN--EVPGYQNANGAT 336 Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 N ++ EE N E+N YK+ L I V+V Sbjct: 337 NGNYERTEETINNEVNKIKKQIVESPYKIRDLGIQVMV 374 >gi|56419754|ref|YP_147072.1| flagellar MS-ring protein [Geobacillus kaustophilus HTA426] gi|56379596|dbj|BAD75504.1| flagellar basal-body M-ring protein [Geobacillus kaustophilus HTA426] Length = 528 Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 88/338 (26%), Positives = 149/338 (44%), Gaps = 21/338 (6%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 FF LY L + +I L + + ++D G++I VP V ++ LAA+ Sbjct: 43 FFATRTEMVPLYSNLSPQEAGQIKATLDQRGVPAEVADGGTTIKVPKEQVDALKVELAAE 102 Query: 101 GLPSSSSNSG---YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 G+P NSG Y F + SFG+T + +++A++ E+A I++I G+ A+V I Sbjct: 103 GIP----NSGVIDYSFFGQNASFGMTDNEFNMVKLKAMQTELANLIKTIDGVEDAKVMIN 158 Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTG 214 +P F ++ ++ P S E I+ HLVA +VPNL ++ +++ Sbjct: 159 LPQPSVFVSDEKGEASASIVLKTKPGYQFSDEQIKALYHLVAKSVPNLSTDNIVIMNQFF 218 Query: 215 KLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD---TQ 271 + N G + + Q I+ +IE +I + + LG + VV + D TQ Sbjct: 219 EYYDLKNDGENSTGTTFASQQQIKKQIERDIQRQVQQLLGTMMGQDKVVVSVTADVDFTQ 278 Query: 272 QIRE--IVYDPDSKVERSIRLS----KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRS 325 + RE +V D K ++ I +S K+ + P A N V + + Sbjct: 279 EKREENLVSPVDEKTKQGIAVSVQRIKETYSGSGAPPGGAAGTGAN--EVPGYQNANGAT 336 Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 N ++ EE N E+N YK+ L I V+V Sbjct: 337 NGNYERTEETINNEVNKIKKQIVESPYKIRDLGIQVMV 374 >gi|297530606|ref|YP_003671881.1| flagellar M-ring protein FliF [Geobacillus sp. C56-T3] gi|297253858|gb|ADI27304.1| flagellar M-ring protein FliF [Geobacillus sp. C56-T3] Length = 528 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 88/338 (26%), Positives = 149/338 (44%), Gaps = 21/338 (6%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 FF LY L + +I L + + ++D G++I VP V ++ LAA+ Sbjct: 43 FFATRTEMVPLYSNLSPQEAGQIKATLDQRGVPAEVADGGTTIKVPKEQVDALKVELAAE 102 Query: 101 GLPSSSSNSG---YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 G+P NSG Y F + SFG+T + +++A++ E+A I++I G+ A+V I Sbjct: 103 GIP----NSGVIDYSFFGQNASFGMTDNEFNMVKLKAMQTELANLIKTIDGVEDAKVMIN 158 Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTG 214 +P F ++ ++ P S E I+ HLVA +VPNL ++ +++ Sbjct: 159 LPQPSVFVSDEKGEASASIVLKTKPGYQFSDEQIKALYHLVAKSVPNLSTDNIVIMNQFF 218 Query: 215 KLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD---TQ 271 + N G + + Q I+ +IE +I + + LG + VV + D TQ Sbjct: 219 EYYDLKNDGENSTGTTFASQQQIKKQIERDIQRQVQQLLGTMMGQDKVVVSVTADVDFTQ 278 Query: 272 QIRE--IVYDPDSKVERSIRLS----KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRS 325 + RE +V D K ++ I +S K+ + P A N V + + Sbjct: 279 EKREENLVSPVDEKTKQGIAVSVQRIKETYSGSGAPPGGAAGTGAN--EVPGYQNANGAT 336 Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 N ++ EE N E+N YK+ L I V+V Sbjct: 337 NGNYERTEETINNEVNKIKKQIVESPYKIRDLGIQVMV 374 >gi|255594469|ref|XP_002536098.1| Flagellar M-ring protein, putative [Ricinus communis] gi|223520885|gb|EEF26286.1| Flagellar M-ring protein, putative [Ricinus communis] Length = 263 Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 77/269 (28%), Positives = 141/269 (52%), Gaps = 13/269 (4%) Query: 22 ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81 +L+LA I +ML+M P + + K+ SD+ + L ++ +RI + Sbjct: 1 MLVLAIGITAAVMLYMWNDQAGYKPVF-GAHEKVAASDMMSV---LDAEHVPYRIHPDSG 56 Query: 82 SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 + VP+ +GK R+ LAA+G+ ++ +G EL DK + G++ F+Q++ R LEGE+A+ Sbjct: 57 QVMVPTGQLGKVRMLLAAKGV-TAQLPAGLELMDKNDPLGVSQFVQDVRFRRGLEGELAQ 115 Query: 142 TIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINPSVYKSAE---AIRHLVAA 197 +I ++ I +ARVH+ + SF G + +ASV++ A+ P S E AI ++V+ Sbjct: 116 SILTLDAIASARVHLAIAKSSSFVANDGDKSSASVVV-AVKPGRTLSNEQIAAIVNMVSG 174 Query: 198 AVPNLDMGDVTVLDSTGKLLTAN-EMERNI--LGKSLSIVQAIQHEIEMNINKALAAFLG 254 +V L V+++D G L++ ++ + + + Q E+ N+ L LG Sbjct: 175 SVAGLAPARVSLVDQNGNYLSSRVDLTEGFDGAAQGDAAAKRYQDEVRTNVAGLLGPVLG 234 Query: 255 VDNFRSAVVAELNMDTQQIREIVYDPDSK 283 DNF+ +V A+++ D + + Y D K Sbjct: 235 ADNFKVSVTADVDNDKVEETQEKYGADPK 263 >gi|222099438|ref|YP_002534006.1| Flagellar M-ring protein [Thermotoga neapolitana DSM 4359] gi|221571828|gb|ACM22640.1| Flagellar M-ring protein [Thermotoga neapolitana DSM 4359] Length = 537 Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 103/391 (26%), Positives = 188/391 (48%), Gaps = 44/391 (11%) Query: 1 MAILDQLLQFFKS----GTSLGRTRILI---LASVILVPIMLFMAARFFVNSPHYDNLYV 53 M + +Q+ +K S+ R R + +A+ +++ I+LF +PHY L Sbjct: 5 MNLFEQIKNLWKKIFDLWNSMPRERRFLVGGIAAALIISIVLFA---IIAATPHYRLLVA 61 Query: 54 KLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYEL 113 L + I L E NI +++S G V + R+ LA++G+ + G+ + Sbjct: 62 GLSEEEAGTIIQKLEEMNIPYKVSPGGDIYVSDKYNVYELRMKLASEGI-LGGTRQGFSI 120 Query: 114 FDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPT 172 + NSFG TSF +++ AL+ E+ R+I +I G+ ARVH+V+P + R A P Sbjct: 121 LSE-NSFGATSFDKQVKYQIALQQELERSIMTIRGVKDARVHLVLPKYTYYVRGEMAEPR 179 Query: 173 ASVMIRAINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNI 226 ASV++ + P + E +R LV+ AV L +V V+D+ + L+ ++ E + Sbjct: 180 ASVLV-VLEPGAELTREQVRGIVELVSGAVEGLKPENVRVVDNYSRSLSDMLESDEETFL 238 Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV--YDPDSKV 284 L + Q ++ E + KAL + G R V+ +++++ +I + Y+ ++ Sbjct: 239 ASSKLELKQQLEKYYENKLKKALESVFGPG--RVEVIPDVSLNWTKIETEMKRYEAPARR 296 Query: 285 ERSIRLSKDAQRSETSQPES------AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ--- 335 E +R +Q +ET + ++ V E N+P +S V S E T E Sbjct: 297 EGLVR----SQETETERSQNLPVSGGEVGTESNIPPLSYPSV----SGEGTSTYERTHTI 348 Query: 336 SNYEINT--KSIATTHDNYKLERLSIAVVVN 364 +NYE+N + I H+ ++ LS+AV+++ Sbjct: 349 TNYELNEIYQKILQNHEG-EISSLSVAVIID 378 >gi|258624661|ref|ZP_05719596.1| flagellar M-ring protein [Vibrio mimicus VM603] gi|258583053|gb|EEW07867.1| flagellar M-ring protein [Vibrio mimicus VM603] Length = 585 Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 114/497 (22%), Positives = 226/497 (45%), Gaps = 53/497 (10%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 ++D+L Q + S R L+L++V+ + + + + ++ LY + E D+ Sbjct: 31 LIDKLKQLWSSSQ-----RNLVLSAVLAAIVAAIIVVALWSSVQNFRPLYSQQERFDIGE 85 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L I +R+ + + V V + R+ LA +G+ + +G++ + +S G Sbjct: 86 IVSVLESEGISYRMQEENGQVLVQEGEVARIRMLLATKGVKAKLP-TGFDSLKEDSSLGT 144 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMI---- 177 + FM+ LEGE+ RTI S++ + ARVH+ +P+ F R+ P+ASV++ Sbjct: 145 SQFMETARYRHGLEGELVRTILSLNAVTNARVHLAIPNQTLFVRQNRENPSASVLLELKP 204 Query: 178 -RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSI 233 + + P + EAI +LV +V + V+V+D G+LL+A+ E + K L Sbjct: 205 GKNLKP---QQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLSADVTSAAEGKVNAKYLEY 261 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293 + ++ +I L + NFR V A+++ + E + D D+ V R Sbjct: 262 QKNVEKQIIQRAADMLTPIVSPTNFRIQVAADMDFSQVEETEEILD-DTPVVRD------ 314 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPL--------PRSLENTDKKEE-QSNYEINTKS 344 T Q S + +P + P+ + +NT+ + E Y + + Sbjct: 315 ---EHTIQNNSVDQIALGVPGSLSNQPPITGKAGEKQTKDSQNTNARSEVNRQYAVGSNI 371 Query: 345 IATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK--IDSYLAEINKIVSAATGINSRR 402 T + ++++LS++V++N ++A GK + +I+ +V A G++ R Sbjct: 372 RRTQYQQGQIKKLSVSVLLN--------SQAAPNGKAWTSAEKKQISTMVMDAVGVSQGR 423 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN-----ALVFLVGTLLVTFLGL 457 GD++++ S +F + + T+ + + VI A++F V L+ L Sbjct: 424 GDSLSLMSFNFTPIDIEAAPTIPWWQDPTVQQPMRYVIGGMLGIAMIFFVLRPLIMHL-T 482 Query: 458 HALRRLHNIDDAKKGEV 474 A RR+ ++ A++ E+ Sbjct: 483 GADRRVQELEFAEQEEL 499 >gi|257140592|ref|ZP_05588854.1| flagellar MS-ring protein [Burkholderia thailandensis E264] Length = 592 Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 52/136 (38%), Positives = 82/136 (60%), Gaps = 2/136 (1%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 78 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 137 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++S++ + AARVH+ +P Sbjct: 138 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESVNAVRAARVHLAIPKP 195 Query: 162 GSFRKIGARPTASVMI 177 F + P+ASV++ Sbjct: 196 SVFVRDREAPSASVLV 211 >gi|323174686|gb|EFZ60306.1| flagellar M-ring protein domain protein [Escherichia coli LT-68] Length = 173 Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 56/153 (36%), Positives = 86/153 (56%), Gaps = 4/153 (2%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +M+ A + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 I++I + ARVH+ MP F + P+ASV Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASV 173 >gi|294500939|ref|YP_003564639.1| flagellar M-ring protein FliF [Bacillus megaterium QM B1551] gi|294350876|gb|ADE71205.1| flagellar M-ring protein FliF [Bacillus megaterium QM B1551] Length = 530 Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 69/246 (28%), Positives = 124/246 (50%), Gaps = 13/246 (5%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 A F+N + LY L + +I L ++ ISDNG++ISVP V ++ LA Sbjct: 41 ASVFLNQDKFVPLYSNLSAQETGQIKAELDARSVPSEISDNGTTISVPEQSVDSLKVDLA 100 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 AQG+P S S Y F K SFG+T ++ ++ A++ E+A +++I G+ A+V I + Sbjct: 101 AQGIPDSGS-IDYSFFGKNASFGMTDNEFDVLKLDAMQTELANLMKNIQGVNDAKVMITL 159 Query: 159 PDMGSF-RKIGARPTASVMIRAINPSVYK----SAEAIRHLVAAAVPNLDMGDVTVLDST 213 P+ + + +AS+++ + YK +++ HLV+ +VPNL ++ +++ Sbjct: 160 PNESVWANEKQGEASASIVLNT--KAGYKFDDQQIKSLYHLVSKSVPNLPTDNIVIMNQY 217 Query: 214 GKLLTANEMERNILGKSLSIVQAIQHEIEMNINKA----LAAFLGVDNFRSAVVAELNMD 269 + E N S + ++ E+E +I + L +G D +V A+L+ Sbjct: 218 FEYFDLKGNETNSASSSFASQNEVKKEVERDIQRQVQQMLGRLVGQDKVMVSVTADLDF- 276 Query: 270 TQQIRE 275 TQ+ RE Sbjct: 277 TQENRE 282 >gi|149201593|ref|ZP_01878567.1| Flagellar FliF M-ring protein [Roseovarius sp. TM1035] gi|149144641|gb|EDM32670.1| Flagellar FliF M-ring protein [Roseovarius sp. TM1035] Length = 564 Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 126/520 (24%), Positives = 220/520 (42%), Gaps = 67/520 (12%) Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 AL+ A +D R+ + +++V + AR+ LA QGLP +++ G D++ G TS Sbjct: 83 ALTAAGMDARLDPSSGALTVAADQFHSARMLLATQGLPEGATD-GMSAIDEM-PMG-TSR 139 Query: 126 MQEITRVRAL-EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 E R+R + E ++AR+IQ + + AARVH+ +P+ +F + P ASV + Sbjct: 140 QIESARLRRMQELDLARSIQELRPVRAARVHLALPERSAFVRDSQPPRASVFLELAPGMA 199 Query: 185 YKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242 A+ AI LVAAAVP++ G+V+V+D TG LLT+ E E + ++ + +QH+ Sbjct: 200 LDQAQVRAIVSLVAAAVPDMPRGNVSVVDQTGTLLTSPE-EDPVQSEA---DRQMQHQRR 255 Query: 243 MN------INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 + + L +G N V +++ +I Y PD+ + S+ Sbjct: 256 LETLYRDRVLSLLTPIVGAGNAAVEVTLDMDFTRSEITSEEYLPDTALRSEQSSSQQTSG 315 Query: 297 SETSQ-PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEIN---------TKSIA 346 ++ P + N +++ +S NYE++ T I Sbjct: 316 AQAGGIPGAVANTPPNEAQMAEAATQGAKSGTTNSATSSTRNYEVSRRVETRQPQTAQIN 375 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 H L RL +G T + LAEI + +A G N+ RGD + Sbjct: 376 RVHAAVLLHRLPTPAAPAEGEATSAAPEAVP-------LAEIEALTRSAIGYNAERGDIV 428 Query: 407 TITSMDFLENQLFNSGT--VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 T+ S F+ S +++ L R A + L G ++ L +R + Sbjct: 429 TVASAPFVVAPSVISAERWYDAAWLPTLGRTLAQLA-----LFGIIV-----LGVVRPIL 478 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNI------ALDSSNQDIFSHSRNLQSR 518 N +L PP+ + TTG+ D I +L + Q + + + N + Sbjct: 479 N------------RLL--PPVGATATTGMTYGDAIEVPRGESLSALRQRLETAAPNAED- 523 Query: 519 INSYVSKQSDLRLLHMIEINE-ERFAKILRKWARSEIEDR 557 +N ++ + + LL + +E R A + + EDR Sbjct: 524 LNGAITYEEKIDLLRQMAGSETNRIAGVFKSMITPTGEDR 563 >gi|148269839|ref|YP_001244299.1| flagellar M-ring protein FliF [Thermotoga petrophila RKU-1] gi|281412278|ref|YP_003346357.1| flagellar M-ring protein FliF [Thermotoga naphthophila RKU-10] gi|147735383|gb|ABQ46723.1| flagellar M-ring protein FliF [Thermotoga petrophila RKU-1] gi|281373381|gb|ADA66943.1| flagellar M-ring protein FliF [Thermotoga naphthophila RKU-10] Length = 532 Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 119/429 (27%), Positives = 203/429 (47%), Gaps = 56/429 (13%) Query: 1 MAILDQLLQFFKS----GTSLGRTRILILASV---ILVPIMLFMAARFFVNSPHYDNLYV 53 M I+++L +K S+ R R ++ + +++ I+LF + PHY L Sbjct: 1 MNIVERLRDLWKKIVELWNSMSRERKFLVGGIGIALVITIVLFAVV---ASVPHYRLLVA 57 Query: 54 KLEVSDVNRISVALSEANIDFRISDNGSSISVPSSM-VGKARIHLAAQGLPSSSSNSGYE 112 L + I L E NI +++S G I VP S V + R+ LA++G+ SS G+ Sbjct: 58 GLNEDEAGVIIQKLEEMNIPYKVSPGGD-IYVPDSYNVYELRMKLASEGV-LGSSRKGFS 115 Query: 113 LFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARP 171 + ++ NSFG TSF +++ AL+ E+ R+I +I G+ ARVH+V+P + R A P Sbjct: 116 ILNE-NSFGATSFDKQVKYQIALQEELERSIMTIKGVKDARVHLVLPKYTYYVRGEMAEP 174 Query: 172 TASVMIRAINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNI 226 ASV++ + P + E +R LV+ AV L +V V+D+ + L+ E Sbjct: 175 RASVLV-VLEPGAELTREQVRGIVELVSGAVEGLKPENVRVVDNYSRSLSDMLETDEGTF 233 Query: 227 LGKS-LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVE 285 L S L + Q ++ E I KAL + G R V+ +++++ SK+E Sbjct: 234 LASSKLELKQQLEKYYESKIKKALESVFGPG--RVEVIPDISINW-----------SKIE 280 Query: 286 RSIRLSKDAQRSE--TSQPESAVTVEQNM-----PHVSDRKVP---LPRSL-ENTDKKEE 334 ++ + R E E+ V QN+ P +D +P P + E T E Sbjct: 281 TEMKKYEAPARREGLVRSQETQVEKSQNLSPTGGPAGTDSNIPPLTYPSATSEGTSTYER 340 Query: 335 Q---SNYEINT--KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE-- 387 +NYE+N + I + ++ LS+AV+++ + VL S+D + + L E Sbjct: 341 THTITNYELNEVYQKIIQNREG-EISSLSVAVIIDAS--SSVLQNSSDWSGVINDLVEKG 397 Query: 388 INKIVSAAT 396 + I S+A+ Sbjct: 398 VGSITSSAS 406 >gi|229544393|ref|ZP_04433451.1| flagellar M-ring protein FliF [Bacillus coagulans 36D1] gi|229324878|gb|EEN90555.1| flagellar M-ring protein FliF [Bacillus coagulans 36D1] Length = 529 Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 95/369 (25%), Positives = 168/369 (45%), Gaps = 21/369 (5%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAA--RFFVNSPHYDNLYVKLEVSDVNRIS 64 L F+KS R++ + V +ML +AA +F+ Y LY L+VS+ I Sbjct: 12 LKGFWKS-----RSKKQKTIGISAVALMLVLAAGITYFMTKTKYAPLYSGLDVSETGSIK 66 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L + + +I+D G +I VP V ++ LAA+GLP + S Y F + FG+T Sbjct: 67 DELDQEGVPSKITDGGKTIEVPEDQVDDLKVTLAAKGLPKTGSID-YSFFSQNAKFGMTD 125 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINPS 183 + ++ A++ E+ I+ + G+ A+V I +P+ F A+ +ASV++ + P Sbjct: 126 NEFNVVKLDAMQTELENLIEQMDGVEKAKVMINLPNQSVFVADSQAKASASVVL-TLKPG 184 Query: 184 V---YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240 +A+ +LV+ +VPNL ++ +++ + N N G + + QAI+ + Sbjct: 185 YELDQNQIKAVYNLVSKSVPNLPTDNIVIMNQNFEYYDLN--SSNSSGNAYTQQQAIKKQ 242 Query: 241 IEMNINKA----LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVE-RSIRLS-KDA 294 IE +I + L+ +G V A+++ ++ E + +P K + I +S K Sbjct: 243 IERDIQQQVQTMLSTLMGAGKAVVTVTADIDFTQEKREEDLVEPVDKTNMKGIEISAKKI 302 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 Q + +A T + V V K + NYE+N T YK+ Sbjct: 303 QETYQGTGAAAGTPSGSTDSVGSSYVSGSNGNGTYSKTSDTINYEVNRIKRKITESPYKI 362 Query: 355 ERLSIAVVV 363 L I V+V Sbjct: 363 RDLGIEVMV 371 >gi|150020374|ref|YP_001305728.1| flagellar M-ring protein FliF [Thermosipho melanesiensis BI429] gi|149792895|gb|ABR30343.1| flagellar M-ring protein FliF [Thermosipho melanesiensis BI429] Length = 489 Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 92/314 (29%), Positives = 153/314 (48%), Gaps = 27/314 (8%) Query: 43 VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSM-VGKARIHLAAQG 101 +N+P Y L +D I L + I +++ + G+ I +PSS V + R+ LA+ G Sbjct: 1 MNAPRYVLLITANNETDAGAIVQQLESSGIPYKV-EAGNRILIPSSYNVYEVRMKLASSG 59 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 + +SS G+E+ D+ SFG TSF +++ RAL+GE+ RTI +I+G+ ARVH+ +P Sbjct: 60 ILGASSK-GFEILDQT-SFGATSFDKQVNYQRALQGELERTIATINGVKYARVHLTLPKY 117 Query: 162 GSF-RKIGARPTASVMIRAINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLL 217 + R A ASV + + P S E ++ +L+ AV L +V V+D+ G+ L Sbjct: 118 TYYVRGDMAETRASVQL-VLEPGASLSKEQVKGIIYLLTGAVEGLKPENVKVVDNFGRAL 176 Query: 218 T-ANEMERNILGKSLSIVQAIQHE--IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 + + N S +Q E I AL A G+ + V+ ++N++ Q+ Sbjct: 177 SDLVNFDENTYAASTKAELKMQLERYYRSKIQPALEAVFGLG--KVEVITDINLNWQKTE 234 Query: 275 EIVYDPDSKVERSIRLSKDAQRSETSQPESA--VTVEQNMPHVSDRKVPLPRSLENT--- 329 + + S IR + T+ P V E N+P +SLE++ Sbjct: 235 KTITTYSSPKGGFIRSKETESEKSTTFPSDGGPVGTESNIP------TTYYQSLESSNST 288 Query: 330 --DKKEEQSNYEIN 341 +KK E +NYE+N Sbjct: 289 LYEKKHEITNYELN 302 >gi|51894139|ref|YP_076830.1| flagellar basal-body M-ring protein [Symbiobacterium thermophilum IAM 14863] gi|51857828|dbj|BAD41986.1| flagellar basal-body M-ring protein [Symbiobacterium thermophilum IAM 14863] Length = 576 Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 84/341 (24%), Positives = 168/341 (49%), Gaps = 14/341 (4%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 ++N P ++ Y + S+V+ + L E + R++ NG I VP+ A + A G Sbjct: 43 YLNRPRWEVFYKASDPSEVSTLVAHLDELGVPSRVTGNGLVIEVPARERSAANLAKAQAG 102 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP SS + G E+F + FG T F +++ RA+EGE++R++ I+ I A+V++ +P+ Sbjct: 103 LP-SSGHVGLEIFAQPQ-FGATEFDRQVNYKRAMEGELSRSLMRIADIEYAKVNLNVPEK 160 Query: 162 GSFRKIGARPTASVMI--RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK-LLT 218 F + P+A+V++ R+ + AI + VA++V L VTV+DS G+ L Sbjct: 161 SVFVRDEEPPSAAVLVQLRSGRTLDADNVTAIINFVASSVEGLTPDRVTVIDSQGRELRP 220 Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 A++ + + ++L+ + + ++ + + L G N ++V EL+ + + E + Sbjct: 221 ADDDAQRLDAEALAFQRQREEQLTQKLLQVLEPIFGRGNVAASVTVELDHQSSRTEERIV 280 Query: 279 DPDSKVERSIRLSKDAQRSETSQPESAVTV---EQNMPHVSDRKVPLPR----SLENTD- 330 V S + +++P T + P V+ VP+ + S E+ + Sbjct: 281 GQGVPVATVSERSGSQTQGTSTEPAPVSTQLPGQGETPGVTAPAVPIYQEPSVSTESGES 340 Query: 331 -KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTE 370 + ++ Y++ ++ T ++R+S AV +N+ LT+ Sbjct: 341 YQSRTETRYDVGERNQVTVSPAGSVKRISAAVTINQDTLTQ 381 >gi|15642994|ref|NP_228036.1| flagellar M-ring protein [Thermotoga maritima MSB8] gi|4980719|gb|AAD35313.1|AE001706_12 flagellar M-ring protein [Thermotoga maritima MSB8] Length = 532 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 131/502 (26%), Positives = 228/502 (45%), Gaps = 74/502 (14%) Query: 1 MAILDQLLQFFKS----GTSLGRTRILILASV---ILVPIMLFMAARFFVNSPHYDNLYV 53 M I+++L +K S+ R R ++ + +++ I+LF + PHY L Sbjct: 1 MNIVERLRDLWKKIVDLWNSMPRERKFLVGGIGIALVIAIVLFAVV---ASVPHYRLLVS 57 Query: 54 KLEVSDVNRISVALSEANIDFRISDNGSSISVPSSM-VGKARIHLAAQGLPSSSSNSGYE 112 L + I L E N+ +++S G I VP S V + R+ LA++G+ SS G+ Sbjct: 58 GLNEDEAGVIIQKLEEMNVPYKVSPGGD-IYVPDSYNVYELRMKLASEGV-LGSSRKGFS 115 Query: 113 LFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARP 171 + + NSFG TSF +++ AL+ E+ R+I +I G+ ARVH+V+P + R A P Sbjct: 116 ILSE-NSFGATSFDKQVKYQIALQEELERSIMTIKGVKDARVHLVLPKYTYYVRGEMAEP 174 Query: 172 TASVMIRAINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNI 226 ASV++ + P + E +R LV+ AV L +V V+D+ + L+ E Sbjct: 175 RASVLV-VLEPGAELTREQVRGIVELVSGAVEGLKPENVRVVDNYSRSLSDMLETDEGTF 233 Query: 227 LGKS-LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVE 285 L S L + Q ++ E I KAL + G R V+ +++++ SK+E Sbjct: 234 LASSKLELKQQLEKYYESKIKKALESVFGPG--RVEVIPDISINW-----------SKIE 280 Query: 286 RSIRLSKDAQRSE--TSQPESAVTVEQNMPHV-----SDRKVPLPRSL-----ENTDKKE 333 ++ + R E E+ V QN+P +D +P P + E T E Sbjct: 281 TEMKKYEAPARREGLVRSQETQVEKSQNLPPTGGPAGTDSNIP-PLTYPSVTSEGTSTYE 339 Query: 334 EQ---SNYEINT--KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 +NYE+N + I + ++ LS+AV+++ + VL S+D + I Sbjct: 340 RTHTITNYELNEVYQKIIQNREG-EISSLSVAVIIDAS--SSVLQNSSDWSSV------I 390 Query: 389 NKIVSAATG-INSRRGDTITITSMDF---LENQLFNSGTVQVSFMDILSRHFATVINALV 444 N +V G I S ++ + + F +E L Q I +R + + + Sbjct: 391 NDLVEKGVGSITSSASLSVAVAFLPFDRSIERAL------QEELKQIETRRRFVLYSVGI 444 Query: 445 FLVG--TLLVTFLGLHALRRLH 464 L+G T ++ +L + +RR+ Sbjct: 445 ALLGFLTFMLIYLMIVQIRRIR 466 >gi|323186389|gb|EFZ71738.1| flagellar M-ring protein domain protein [Escherichia coli 1357] Length = 173 Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 56/153 (36%), Positives = 85/153 (55%), Gaps = 4/153 (2%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LI+A V +M+ A + +P Y L+ L D I L++ NI +R S+ + Sbjct: 25 LIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE++RT Sbjct: 83 IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 I +I + ARVH+ MP F + P+ASV Sbjct: 141 IATIGPVKGARVHLAMPKPSLFVREQKSPSASV 173 >gi|154249519|ref|YP_001410344.1| flagellar M-ring protein FliF [Fervidobacterium nodosum Rt17-B1] gi|154153455|gb|ABS60687.1| flagellar M-ring protein FliF [Fervidobacterium nodosum Rt17-B1] Length = 535 Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 114/469 (24%), Positives = 224/469 (47%), Gaps = 57/469 (12%) Query: 22 ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81 I+I+ASVIL I+L + VN+P Y L D + L I +++ + G+ Sbjct: 30 IMIIASVILAIILLAI-----VNAPKYVLLLTTRTEQDAGSVIQQLETLGIPYKV-EAGN 83 Query: 82 SISVPSSM-VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140 I +PSS V + R+ LA+ G+ S SS G+E+ D+ S G TSF +++ AL+GE+ Sbjct: 84 RILIPSSYNVYEVRMRLASTGILSGSSR-GFEILDQ-TSLGATSFDKQVRYQIALQGELE 141 Query: 141 RTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINPSVYKSAEAIR---HLVA 196 RTI +I G+ ++RV + +P + R + P ASVM+ ++P S E ++ L+ Sbjct: 142 RTISTIKGVQSSRVVLTLPKYTYYVRGEMSEPRASVMV-VMDPGQSLSKEQVKGIVSLIQ 200 Query: 197 AAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAIQHEIEMNINKALAAFL 253 AV + ++ ++D TG+ LTA + + + + +++ + I L Sbjct: 201 GAVEGIKTENIKIIDQTGQDLTAMLNLDQSTALASTKMELKVNLENYYKQKIKVPLENIF 260 Query: 254 GVDNFRSAVVAELNMDTQQIREIV--YDPDSKVERSIRLSK-DAQRSETSQPESA-VTVE 309 G R V+ ++ ++ +++ + + Y +K E +R + +++ S TSQ V E Sbjct: 261 GPG--RVEVIPDVKLNWEKVEKQITTYTAPNKKEGLVRSKETESEYSTTSQGAGGPVGTE 318 Query: 310 QNMPHVSDRKVPLPRSLENTD--------KKEEQSNYEINT--KSIATTHDNYKLERLSI 359 N+P P + E+T+ K E NYE+N ++I + ++E +++ Sbjct: 319 SNIP---------PTTYESTEGTGVTTYQKSHEIVNYELNQVIENIVKNTEG-EIENITV 368 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD-TITITSMDF---LE 415 +VV++ + VL R++ + ++ +Y I I+ + N+ G T + + F ++ Sbjct: 369 SVVIDSS--STVLERTS-KDEVQNY---IKTIIEKSISANTPNGSVTYAVAFLPFSREIQ 422 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 Q + + +R ++ +++ ++LGL R++ Sbjct: 423 EQFYKELQTTTEIQKLRTRLILVLLASILI----FFASYLGLIQFRKIK 467 >gi|153001452|ref|YP_001367133.1| flagellar MS-ring protein [Shewanella baltica OS185] gi|217972616|ref|YP_002357367.1| flagellar MS-ring protein [Shewanella baltica OS223] gi|304409960|ref|ZP_07391579.1| flagellar M-ring protein FliF [Shewanella baltica OS183] gi|307302327|ref|ZP_07582085.1| flagellar M-ring protein FliF [Shewanella baltica BA175] gi|151366070|gb|ABS09070.1| flagellar M-ring protein FliF [Shewanella baltica OS185] gi|217497751|gb|ACK45944.1| flagellar M-ring protein FliF [Shewanella baltica OS223] gi|304351369|gb|EFM15768.1| flagellar M-ring protein FliF [Shewanella baltica OS183] gi|306914365|gb|EFN44786.1| flagellar M-ring protein FliF [Shewanella baltica BA175] Length = 560 Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 102/449 (22%), Positives = 201/449 (44%), Gaps = 26/449 (5%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y L K+E ++ ++ L + + ++I + I VP + ++ L+ Sbjct: 53 LWAQEPEYRPLG-KMETQEMVQVLDVLDKNKVKYQI--DVDVIKVPEDKYQEVKMMLSRA 109 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 G+ S +++ + ++ + FG++ M++ + E +AR I+ + + A+V + +P Sbjct: 110 GVDSPAASQDF--LNQDSGFGVSQRMEQARLKHSQEENLARAIEQLQSVSRAKVILALPK 167 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + ++P+A+V+I + + +AI +VA+AV L+ VTV DS G+LL + Sbjct: 168 ENVFARNASKPSATVVINTRRGGLGQGEVDAIVDIVASAVQGLEPSRVTVTDSNGRLLNS 227 Query: 220 NEME--RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 + + L +VQ + E I L LG DNF S V +++MD + + Sbjct: 228 GSQDGASATARRELELVQQKEAEYRTKIESILVPILGPDNFTSQV--DVSMDFTAVEQTS 285 Query: 278 --YDPDSKVERSIRLSKDAQRSETSQPESAV--------TVEQNMPHVSDRKVPLPRSLE 327 Y+PD S+R + + T + +E N+P D + Sbjct: 286 KRYNPDLP---SLRSEMTVENNTTGGSSGGIPGALSNQPPMESNIPQ--DATKATESATA 340 Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN-KGRLTEVLGRSADQGKIDSYLA 386 +E N+E++T T + R+S++V V+ K G+ A + + L Sbjct: 341 GNSHREATRNFELDTTISHTRQQVGAVRRISVSVAVDFKPGAAGENGQVARVARTEQELT 400 Query: 387 EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFL 446 I +++ A G +S+RGD + + ++ F++ + + +++ R I ALV L Sbjct: 401 NIRRLLEGAVGFSSQRGDVLEVVTVPFMDQLVEDLPALELWEQPWFWRAIKLGIGALVIL 460 Query: 447 VGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 V L V L L +++ + G +G Sbjct: 461 VLILAVVRPMLKRLIYPDSVNMPEDGRLG 489 >gi|170288525|ref|YP_001738763.1| flagellar M-ring protein FliF [Thermotoga sp. RQ2] gi|170176028|gb|ACB09080.1| flagellar M-ring protein FliF [Thermotoga sp. RQ2] Length = 532 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 118/429 (27%), Positives = 203/429 (47%), Gaps = 56/429 (13%) Query: 1 MAILDQLLQFFKS----GTSLGRTRILILASV---ILVPIMLFMAARFFVNSPHYDNLYV 53 M I+++L +K +S+ R R ++ + +++ I+LF + PHY L Sbjct: 1 MNIVERLRDLWKKIVDMWSSMPRERKFLVGGIGIALVITIVLFAVV---TSVPHYRLLVA 57 Query: 54 KLEVSDVNRISVALSEANIDFRISDNGSSISVPSSM-VGKARIHLAAQGLPSSSSNSGYE 112 L + I L E NI +++S G I VP S V + R+ LA++G+ SS G+ Sbjct: 58 GLNEDEAGVIIQKLEEMNIPYKVSPGGD-IYVPDSYNVYELRMKLASEGV-LGSSRKGFS 115 Query: 113 LFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARP 171 + + NSFG TSF +++ AL+ E+ R+I +I G+ ARVH+V+P + R A P Sbjct: 116 ILSE-NSFGATSFDKQVKYQIALQEELERSIMTIKGVKDARVHLVLPKYTYYVRGEMAEP 174 Query: 172 TASVMIRAINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNI 226 ASV++ + P + E +R LV+ AV L +V V+D+ + L+ E Sbjct: 175 RASVLV-VLEPGAELTREQVRGIVELVSGAVEGLKPENVRVVDNYSRSLSDMLETDEGTF 233 Query: 227 LGKS-LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVE 285 L S L + Q ++ E I KAL + G R V+ +++++ SK+E Sbjct: 234 LASSKLELKQQLEKYYESKIKKALESVFGPG--RVEVIPDISINW-----------SKIE 280 Query: 286 RSIRLSKDAQRSE--TSQPESAVTVEQNM-----PHVSDRKVP---LPRSL-ENTDKKEE 334 ++ + R E E+ V QN+ P +D +P P + E T E Sbjct: 281 TEMKKYEAPARREGLVRSQETQVEKSQNLSPTGGPAGTDSNIPPFTYPSATSEGTSTYER 340 Query: 335 Q---SNYEINT--KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE-- 387 +NYE+N + I + ++ LS+AV+++ + VL ++D + + L E Sbjct: 341 THTITNYELNEVYQKIIQNREG-EISSLSVAVIIDAS--SSVLQNNSDWSSVINDLVEKG 397 Query: 388 INKIVSAAT 396 + I S+A+ Sbjct: 398 VGSITSSAS 406 >gi|196247639|ref|ZP_03146341.1| flagellar M-ring protein FliF [Geobacillus sp. G11MC16] gi|196212423|gb|EDY07180.1| flagellar M-ring protein FliF [Geobacillus sp. G11MC16] Length = 527 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 86/339 (25%), Positives = 147/339 (43%), Gaps = 23/339 (6%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 FF LY L + +I L + ++D G++I VP V ++ LAA+ Sbjct: 43 FFATRTEMVPLYSNLTPQEAGQIKATLDGRGVSAEVADGGTTIKVPKEQVDALKVELAAE 102 Query: 101 GLPSSSSNSG---YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 G+P NSG Y F + SFG+T + +++A++ E+A +++I G+ A+V I Sbjct: 103 GIP----NSGVIDYSFFGQNASFGMTDNEFNMVKLKAMQTELANLMKTIDGVEDAKVMIN 158 Query: 158 MPDMGSF-RKIGARPTASVMIRAINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDST 213 +P F +AS+++R P S E IR HLVA +VPNL ++ +++ Sbjct: 159 LPQPSVFVSDEKGEASASIVLRT-KPGYQFSDEQIRALYHLVAKSVPNLSTDNIVIMNQF 217 Query: 214 GKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD---T 270 + N G + + Q I+ +IE +I + + LG + VV + D T Sbjct: 218 FEYFDLKNDSGNSTGATFASQQQIKKQIERDIQRQVQQMLGTMMGQDKVVVSVTADVDFT 277 Query: 271 QQIRE------IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPR 324 Q+ RE + + D + S++ K+ + P N + Sbjct: 278 QEKREENLVAPVGEENDEGIAVSVQRIKETYAGSGAPPGGTAGTGTN--ETPGYQGASGA 335 Query: 325 SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 + N ++ EE N E+N YK+ L I V+V Sbjct: 336 TNGNYERTEETINNEVNKIKKQIVESPYKIRDLGIQVMV 374 >gi|109899352|ref|YP_662607.1| flagellar MS-ring protein [Pseudoalteromonas atlantica T6c] gi|109701633|gb|ABG41553.1| flagellar M-ring protein FliF [Pseudoalteromonas atlantica T6c] Length = 568 Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 98/413 (23%), Positives = 194/413 (46%), Gaps = 26/413 (6%) Query: 15 TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF 74 T + R L++A VI V I +F+ + P Y L K++ ++ + +D+ Sbjct: 38 TDMVRQLTLVVALVICVAIAVFIM--IWAQEPDYRPL-AKMQTQELIEALDYFDQNQVDY 94 Query: 75 RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134 R+ G+++ V + ++ +A QGL S + G ++ + FG++ ++++ A Sbjct: 95 RL--EGNTVYVSADQYQNIKLGMARQGL-SQGVSEGTDIIMQDMGFGVSQRVEKVRLKHA 151 Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIR 192 E ++ART++ +S + A+V + +P F + + +A+V++ + ++ + E +I Sbjct: 152 REQQLARTLEEMSAVTRAKVLLALPKENVFARREKKASATVVVTSRRGAIMGNEEVSSIV 211 Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHEIEMNINKALA 250 +VA+AV L+ VTV DS G+LL + + K + + + E I+ L Sbjct: 212 DIVASAVQGLEPERVTVTDSNGRLLNSGSQDSEAARSKKEFEMERKRETEYLQKIDSILI 271 Query: 251 AFLGVDNFRSAVVAELNMDTQQIREI--VYDPDSKVERS-IRLSKDAQRSETSQPESAVT 307 LG+ N+ + A++ MD + + Y+PD RS + + +++ A+T Sbjct: 272 PVLGLGNYTAQ--ADVTMDFTAVEQTKRSYNPDLPAVRSEMTVEENSVGGMLGGIPGALT 329 Query: 308 VEQNMPHVSDRKVPLPRSLENT-------DKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 N P + D +P S NT + KEE NYE++T T + RLS++ Sbjct: 330 ---NQPPL-DSNIPEEASASNTQTTVPGRNHKEETRNYELDTTISHTKQQTGVIRRLSVS 385 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 V ++ G S + + L +I +++ G + RGD++ + S+ F Sbjct: 386 VALDHVSTVGEDGTSTLVPRSQAELLDIRRLLQGGIGFDVTRGDSLEVVSIPF 438 >gi|315123886|ref|YP_004065890.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315017608|gb|ADT65701.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 317 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 75/248 (30%), Positives = 129/248 (52%), Gaps = 9/248 (3%) Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L + NI +++ ++ + I VP V + R+ +A++GL S G+E FD +FG Sbjct: 68 IVAKLEQNNIPYKL-ESENKILVPQDQVYRQRMFIASEGL-IKDSRVGFEAFD-TQAFGA 124 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAI 180 T+ Q++ RA+EGE+ARTI+++ I +A VHI P F + PTASV+ +R Sbjct: 125 TNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASVVVNVREG 184 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQH 239 K + I+++V+AAVP L +V + D +G L E E +++ + + Sbjct: 185 LKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIKFKSDQEK 244 Query: 240 EIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 +E I + LA F G+D + +V + + Q+ + +YDP+ V L+++ R+ Sbjct: 245 ALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLNEE--RTG 302 Query: 299 TSQPESAV 306 PE V Sbjct: 303 RKDPEIQV 310 >gi|126175128|ref|YP_001051277.1| flagellar MS-ring protein [Shewanella baltica OS155] gi|125998333|gb|ABN62408.1| flagellar M-ring protein FliF [Shewanella baltica OS155] Length = 560 Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 102/446 (22%), Positives = 202/446 (45%), Gaps = 20/446 (4%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y L K+E ++ ++ L + + ++I + I VP + ++ L+ Sbjct: 53 LWAQEPEYRPLG-KMETQEMVQVLDVLDKNKVKYQI--DVDVIKVPEDKYQEVKMMLSRA 109 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 G+ S +++ + ++ + FG++ M++ + E +AR I+ + + A+V + +P Sbjct: 110 GVDSPAASQDF--LNQDSGFGVSQRMEQARLKHSQEENLARAIEQLQSVSRAKVILALPK 167 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + ++P+A+V+I + + +AI +VA+AV L+ VTV DS G+LL + Sbjct: 168 ENVFARNASKPSATVVINTRRGGLGQGEVDAIVDIVASAVQGLEPSRVTVTDSNGRLLNS 227 Query: 220 NEME--RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 + + L +VQ + E I L LG DNF S V +++MD + + Sbjct: 228 GSQDGASATARRELELVQQKEAEYRTKIESILVPILGPDNFTSQV--DVSMDFTAVEQTS 285 Query: 278 --YDPDSKVERS-IRLSKDAQRSETSQPESAVT----VEQNMPHVSDRKVPLPRSLENTD 330 Y+PD RS + + + + A++ +E N+P D Sbjct: 286 KRYNPDLPALRSEMTVENNTTGGSSGGIPGALSNQPPMESNIPQ--DATKATESVTAGNS 343 Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN-KGRLTEVLGRSADQGKIDSYLAEIN 389 +E N+E++T T + R+S++V V+ K G+ A + + L I Sbjct: 344 HREATRNFELDTTISHTRQQVGAVRRISVSVAVDFKPGAAGENGQVARVARTEQELTNIR 403 Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGT 449 +++ A G +S+RGD + + ++ F++ + + +++ R I ALV LV Sbjct: 404 RLLEGAVGFSSQRGDVLEVVTVPFMDQLVEDLPALELWEQPWFWRAIKLGIGALVILVLI 463 Query: 450 LLVTFLGLHALRRLHNIDDAKKGEVG 475 L V L L +++ + G +G Sbjct: 464 LAVVRPMLKRLIYPDSVNMPEDGRLG 489 >gi|188586017|ref|YP_001917562.1| flagellar M-ring protein FliF [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350704|gb|ACB84974.1| flagellar M-ring protein FliF [Natranaerobius thermophilus JW/NM-WN-LF] Length = 519 Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 132/562 (23%), Positives = 231/562 (41%), Gaps = 94/562 (16%) Query: 15 TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF 74 T+LG + I+ +++L ML Y + L+ D + I+ + + + + Sbjct: 29 TALG---LFIIGTLVLSVSML---------QTDYTEVARDLDPRDASEIAEMIEDMGVSY 76 Query: 75 RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134 +I D GS I VP + R+ LA GLP GYE D GLT +E+ + A Sbjct: 77 QIEDGGSRILVPEDDHDQVRLELAGAGLPRGGV-LGYEELD-TQQLGLTESEREMRQKIA 134 Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS---VYKSAEAI 191 LEGE+ RTI+ + ARVH+V+P+ F + A+V + + P + +I Sbjct: 135 LEGELVRTIRRYPEVEDARVHLVLPERSIFEETREDSQAAVFL-DLEPHRELTEQQISSI 193 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---------ILGKSLSIVQAIQHEIE 242 +LVA +V L +VT+ ++G + +++ + + + K LSI + Q+ ++ Sbjct: 194 VNLVAHSVEGLTPKNVTL--TSGDRMLSDKTQSDDKNSPSAGSEVEKRLSIQEEFQNTLQ 251 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQRSE- 298 ++ L +G N + V AEL+ D + +++P D + S+ ++ E Sbjct: 252 SSVESMLENIVGRGNVTARVNAELDFDEFESFSELFEPVEGDEGILVSMHREEEFYSGED 311 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 SQ + P ++V + ++ +E NYE+N + L +LS Sbjct: 312 VSQGGVPGDPAEGTPEY--QEVTGEGGSFDYERIDETRNYEVNKIEERSRLAPGALNKLS 369 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN-SRRGDTITITSMDFLENQ 417 +AV VN+ D+ ++DS I +V A GIN IT+ MDF Sbjct: 370 VAVAVNQ---------ELDEDEMDS----IEALVEDAVGINLENENHQITVEQMDF---- 412 Query: 418 LFNSGTVQVSFMDILS------RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 S D+L+ + A + +G ++ L L + I D K+ Sbjct: 413 -------DTSLQDMLAAQHEKKQQMAAQQRWITLGIGAAVLVVLALIGRKIYKTIRDRKE 465 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 I + M D A +++DI +Q +I+ + K+ Sbjct: 466 -------------IEDRLEREQMVQDQAA---ASEDIEPEVPKVQKQISDFAEKKP---- 505 Query: 532 LHMIEINEERFAKILRKWARSE 553 E FAK+L+ W E Sbjct: 506 --------EEFAKVLKAWLAEE 519 >gi|321315387|ref|YP_004207674.1| flagellar MS-ring protein [Bacillus subtilis BSn5] gi|320021661|gb|ADV96647.1| flagellar MS-ring protein [Bacillus subtilis BSn5] Length = 531 Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 94/379 (24%), Positives = 176/379 (46%), Gaps = 25/379 (6%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + ++ +F+K+ + L + +++ S + I++ + F ++ LY L + Sbjct: 1 MQMKNKTSEFWKNRSKLQK---ILMVSALAAIIIIGIIISVFASNSKMAPLYKDLSAEEA 57 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +I L + +S+ G+ ISVP V ++ +AA+GLP + S Y F + F Sbjct: 58 GQIKEELDAKKVPNELSNGGTVISVPEDQVDSLKVQMAAEGLPKTGS-IDYSFFGQNAGF 116 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTA--SVMIR 178 GLT ++ +V+A + E++ I + GI +++V I +P F +G +A + ++ Sbjct: 117 GLTDNEFDMVKVKATQTELSNLINEMDGIKSSKVMINLPKDAVF--VGEEQSAASASIVL 174 Query: 179 AINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ 235 I P I HLV+ +VPNL ++ ++D ++ + S S Q Sbjct: 175 QIQPGYTLDQSQINGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSDSDAGSYADSYSSQQ 234 Query: 236 AIQHEIEMNINKALAAFLGV----DNFRSAVVAELNMDTQQIREIVYDP-DSKVERSIRL 290 I+ ++E +I K + + LG D +V A+++ + E + +P D + I + Sbjct: 235 GIKSQVEKDIQKHVQSLLGTMMGQDKVVVSVTADIDFTKENRTEDIVEPVDKENMEGIAV 294 Query: 291 SKDAQRSETSQPESAV---TVEQNMPHVSDRKVPLPRSLE-NTDKKEEQSNYEINT--KS 344 S + + SET Q + A T V++ K + N +K + NYE+N K Sbjct: 295 SAE-KVSETYQGDGAANGGTAGTGEEDVTNYKADGENTESGNYEKNSNKINYEVNRIHKE 353 Query: 345 IATTHDNYKLERLSIAVVV 363 IA + YK+ L I V+V Sbjct: 354 IAESP--YKVRDLGIQVMV 370 >gi|160876177|ref|YP_001555493.1| flagellar MS-ring protein [Shewanella baltica OS195] gi|160861699|gb|ABX50233.1| flagellar M-ring protein FliF [Shewanella baltica OS195] gi|315268373|gb|ADT95226.1| flagellar M-ring protein FliF [Shewanella baltica OS678] Length = 560 Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 98/426 (23%), Positives = 191/426 (44%), Gaps = 26/426 (6%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y L K+E ++ ++ L + + ++I + I VP + ++ L+ Sbjct: 53 LWAQEPEYRPLG-KMETQEMVQVLDVLDKNKVKYQI--DVDVIKVPEDKYQEVKMMLSRA 109 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 G+ S +++ + ++ + FG++ M++ + E +AR I+ + + A+V + +P Sbjct: 110 GVDSPAASQDF--LNQDSGFGVSQRMEQARLKHSQEENLARAIEQLQSVSRAKVILALPK 167 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + ++P+A+V+I + + +AI +VA+AV L+ VTV DS G+LL + Sbjct: 168 ENVFARNASKPSATVVINTRRGGLGQGEVDAIVDIVASAVQGLEPSRVTVTDSNGRLLNS 227 Query: 220 NEME--RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 + + L +VQ + E I L LG DNF S V +++MD + + Sbjct: 228 GSQDGASATARRELELVQQKEAEYRTKIESILVPILGPDNFTSQV--DVSMDFTAVEQTS 285 Query: 278 --YDPDSKVERSIRLSKDAQRSETSQPESAV--------TVEQNMPHVSDRKVPLPRSLE 327 Y+PD S+R + + T + +E N+P D Sbjct: 286 KRYNPDLP---SLRSEMTVENNTTGGSSGGIPGALSNQPPMESNIPQ--DATKATESVTA 340 Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN-KGRLTEVLGRSADQGKIDSYLA 386 +E N+E++T T + R+S++V V+ K G+ A + + L Sbjct: 341 GNSHREATRNFELDTTISHTRQQVGAVRRISVSVAVDFKPGAAGENGQVARVARTEQELT 400 Query: 387 EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFL 446 I +++ A G +S+RGD + + ++ F++ + + +++ R I ALV L Sbjct: 401 NIRRLLEGAVGFSSQRGDVLEVVTVPFMDQLVEDLPALELWEQPWFWRAIKLGIGALVIL 460 Query: 447 VGTLLV 452 V L V Sbjct: 461 VLILAV 466 >gi|304404244|ref|ZP_07385906.1| flagellar M-ring protein FliF [Paenibacillus curdlanolyticus YK9] gi|304347222|gb|EFM13054.1| flagellar M-ring protein FliF [Paenibacillus curdlanolyticus YK9] Length = 527 Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 97/433 (22%), Positives = 202/433 (46%), Gaps = 40/433 (9%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 D+L Q++ + G+ + + L + I+ + + + Y+ + L+ +D + Sbjct: 10 DRLSQWW---SQTGKKQKIWLGGTLGFLILAIILLTYIFSRTDYEIAFQNLDTTDSAAVM 66 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS-FGLT 123 L + I +++S +G SI VPS++ + +I + +QGL + S G++ F++ +S +G T Sbjct: 67 TYLDSSGIKYQLSSDGKSILVPSAVASRVKIDVGSQGLVRNGS-IGFDSFNQNSSQWGTT 125 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRAIN- 181 + AL GE+ + + ++ G+ +++V + +P F + AS+ ++ N Sbjct: 126 DNEFNVKYRNALNGEVQQLLNNMQGVESSKVLVTLPQESVFADREEEHAIASITLKFTNG 185 Query: 182 --PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS------LSI 233 PS K + LV AVPNL + D+T+ + G+L+++ G + I Sbjct: 186 YRPS-QKEVDGYFKLVKTAVPNLAIDDITIASTEGELVSSEAGGSPANGGTEVADQLFQI 244 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-DSKVERSIRLSK 292 + + E++ NI + L+ +G N + + LN D + + + +P + + + LS+ Sbjct: 245 QRKYETELKKNIQQYLSTMIGEGNVAVYIASSLNFDQKTSEQNLVEPIANNNNKGVVLSE 304 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVP---LPRSLENTDKKEEQS--NYEINTKSIAT 347 ++ +SAV +P + VP N+ +E S NYEIN Sbjct: 305 QETSKTSTNTDSAVG---GVPGSGETDVPGYTAANGAGNSSNEETSSIRNYEINRIKNIV 361 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN-------S 400 + ++ L+I++ VN+ L + Q +I +Y+ +I + A +G++ S Sbjct: 362 ESSPFMIKDLNISIGVNRASL-----QGEAQTQITNYVKQILRTQLAQSGLDVTSDSVVS 416 Query: 401 RRGDTITITSMDF 413 +R +T+ + DF Sbjct: 417 QR---VTVMAQDF 426 >gi|15895431|ref|NP_348780.1| flagellar MS-ring protein [Clostridium acetobutylicum ATCC 824] gi|15025155|gb|AAK80120.1|AE007716_9 Flagellar basal body M-ring protein FliF [Clostridium acetobutylicum ATCC 824] gi|325509577|gb|ADZ21213.1| flagellar MS-ring protein [Clostridium acetobutylicum EA 2018] Length = 544 Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 108/412 (26%), Positives = 188/412 (45%), Gaps = 43/412 (10%) Query: 22 ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81 LI+ I+ +++F+ + Y L+ KL+ SD + L I + + + Sbjct: 26 FLIIVVAIIASLVVFLVS---TTRTKYAVLFSKLDSSDAATVISKLDSDKIAHKEDSSTN 82 Query: 82 SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK-VNSFGLTSFMQEITRVRALEGEIA 140 +I VP++ V K R+ A L S +G+ELFD N FG T + RAL+GE+ Sbjct: 83 TIYVPAADVDKLRLQYAT-NLKGGS--TGFELFDNSANKFGTTDSEFNVEYQRALQGELE 139 Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI--RAINPSVYKSAEAIRHLVAAA 198 RTI++ I ARVH+VM + +F K +ASV + +A +AI LV+ + Sbjct: 140 RTIKNFDEISDARVHLVMSEDSAFVKDSTPASASVTVKMKAGETLSKDQVKAIISLVSGS 199 Query: 199 VPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS------------IVQAIQHEIEMNIN 246 V NL +V V+D LL+ + N GK S + ++ E+E Sbjct: 200 VKNLPKENVQVVDDKMALLSKDLY--NSKGKDDSSDTTDSAENRNKMESNVESELEKKAL 257 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVY-----DPDSKVERSIRLSKDAQRSETSQ 301 +L + G + + A+LN D Q+ Y +P+ +I +S+ +Q S T+ Sbjct: 258 DSLESIYGKGKVKVKINADLNFDAQETNSQTYYDNKGNPNDPKNPTI-VSQHSQES-TNS 315 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 + + + + + S + K+ +NY++++++ T + RL+I+V Sbjct: 316 QPQSTSSSPLDNNTNSNTIANNNSNSTSSSKDVTTNYDVSSETNKTVKAPGDVRRLTISV 375 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 +V+ G++ G S L +VS A G N +RGDTI++ + F Sbjct: 376 IVD-GKI---------NGDTQSTLTN---VVSNAVGYNQQRGDTISVEGLPF 414 >gi|153953778|ref|YP_001394543.1| flagellar MS-ring protein [Clostridium kluyveri DSM 555] gi|219854394|ref|YP_002471516.1| hypothetical protein CKR_1051 [Clostridium kluyveri NBRC 12016] gi|146346659|gb|EDK33195.1| FliF [Clostridium kluyveri DSM 555] gi|219568118|dbj|BAH06102.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 527 Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 97/378 (25%), Positives = 172/378 (45%), Gaps = 37/378 (9%) Query: 48 YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 Y L+ ++ D++ + L E +D ++ G+SI VP V R+ + ++ + ++ Sbjct: 49 YAVLFSNMDSKDLSSVYKQLQEDKVDVKVE--GNSILVPEGEVDATRMKVLSE-VEITNG 105 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 + G+EL D+ + G T +I RAL+GE+ RTI+S+ + ARVH+V+PD F K Sbjct: 106 SEGFELLDQ-SKLGSTDTEIKINYQRALQGELERTIKSLPEVENARVHLVLPDDTEFVKD 164 Query: 168 GARPTASVMIRAINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLLTANEMER 224 + +ASV ++ + S E ++ LV+ AV N+ +V V+D LL+ + E Sbjct: 165 TSPGSASVTLK-LKEGEELSKEQVKALVSLVSGAVKNVPKENVQVIDDNMTLLSKDLFED 223 Query: 225 NILGKSLSI----VQAIQHEIEMNINKALAAFL----GVDNFRSAVVAELNMDTQQIREI 276 + +I Q ++ + E N+ K L + L G D + V A+L+ D Q Sbjct: 224 EANSEDSTIPAEKQQQLKEQYEKNLEKNLLSMLEAVYGKDKVQVKVNADLDFDAVQQNST 283 Query: 277 VYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQS 336 YD +S V +++ Q T+Q S P+ ++ NT + Sbjct: 284 TYDNNSVVVSEHTINETNQGDTTNQTGS----------------PVDNNMSNT----ITN 323 Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI-DSYLAEINKIVSAA 395 N + T NY + ++ V G + + A G + D+ I + +A Sbjct: 324 NTTGGNSTYNETTRNYNVPKVEQKTVKAPGSVKRLTASVALDGDVDDATTTAIRNLAVSA 383 Query: 396 TGINSRRGDTITITSMDF 413 G + RGDTI++ + F Sbjct: 384 IGYDGNRGDTISVEGLPF 401 >gi|312126819|ref|YP_003991693.1| flagellar m-ring protein flif [Caldicellulosiruptor hydrothermalis 108] gi|311776838|gb|ADQ06324.1| flagellar M-ring protein FliF [Caldicellulosiruptor hydrothermalis 108] Length = 560 Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 96/367 (26%), Positives = 180/367 (49%), Gaps = 24/367 (6%) Query: 15 TSLGRTRILIL---ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71 +SL +++ ++L +S+IL+ ++ AA + PHY ++ L+ + I LSE Sbjct: 17 SSLSKSQKIMLVVSSSIILLSVI---AAIYITTRPHYVTIFSGLDPKEAAEIQNILSEQK 73 Query: 72 IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131 ID + ++ G++I V + V +A++ A G P +SS + + +S T + T Sbjct: 74 IDSKAANGGTTILVRDTDVDRAKMAAAQAGYPKNSSITFEDALKLSSSMTATEADKRRTF 133 Query: 132 VRALEGEIARTIQSISGIVA-ARVHIVMPDMGSF--RKIGARPTASVMIRAINPSVYKSA 188 ++ E EI + ++ +S + A V++ +P+ +F + +PTASV + Sbjct: 134 IKLKESEIQQALKQMSDYIEDAVVNLSIPEDYTFALKSEATKPTASVKLTLKKSLSSDQI 193 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEMNIN 246 E I+ VAA+V L +V ++D+ G L++N + + K L + A ++EIE + Sbjct: 194 EGIQRFVAASVEGLLPENVVIIDNKGNYLSSNSSDTTEGLSSKQLQLKIATKNEIEKKVK 253 Query: 247 KALAAFLGV-DNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQRSETSQP 302 + L +++ ++ + +V ++N D Q+I E Y P DS + S + +K+ +S T+ Sbjct: 254 ELLGSYVSSPEDVKVSVNLDMNFDMQKISETKYSPVLEDSGIVVSKKTTKEEAQS-TNSS 312 Query: 303 ESAVTVEQNMPHVSDRKVPLPRS--LENTDKKEEQSNYEINTKSIATTHD----NYKLER 356 S V P + + P+ K +E NY+ N K I T NY ++ Sbjct: 313 SSGVPGTDTNPTQNTTQYPISSQGGQSTYTKTDETVNYQNNEKKIETIKAPGTINY--DK 370 Query: 357 LSIAVVV 363 SIAVV+ Sbjct: 371 SSIAVVL 377 >gi|229918627|ref|YP_002887273.1| flagellar MS-ring protein [Exiguobacterium sp. AT1b] gi|229470056|gb|ACQ71828.1| flagellar M-ring protein FliF [Exiguobacterium sp. AT1b] Length = 523 Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 75/288 (26%), Positives = 143/288 (49%), Gaps = 26/288 (9%) Query: 5 DQLLQFFKSGT----SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 +QL + FKS T ++ R L+ I V ++ + FF++ P+ LY L + Sbjct: 3 EQLKERFKSMTDALKAMPAKRKLVWGISIAVILIAALVLTFFLSRPNMAPLYTNLSAQEA 62 Query: 61 NRISVALSEANI--DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 ++ L+ + + + + NG S+ VP+ MV + ++ LAA G+P S S Y F + Sbjct: 63 GEVTEKLTADGVQSEIKATSNGVSVYVPTEMVDQLKVSLAAAGIPKSGS-IDYSFFSENA 121 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMI 177 FG T + A++ E+ R I I GI A+V I +P+ F + PTAS+++ Sbjct: 122 GFGTTDREMAVIERSAMQTELERLITQIEGINQAKVIISLPEKSVFLAEDQGEPTASIVL 181 Query: 178 RA-----INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKS 230 + P+ K + HL++ +VPNL +++++D + T ++++ ++ G S Sbjct: 182 NIGAGTNLEPNTVK---GLYHLISKSVPNLKPENISIMD---QYFTYYDLDQTVVAGGSS 235 Query: 231 ---LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 L++ + ++ ++ I + L+ LG + +V A ++DT Q E Sbjct: 236 SDPLALKRQVEKDVRQQIQQMLSVLLGERSVLVSVTA--DIDTTQTAE 281 >gi|326386946|ref|ZP_08208560.1| flagellar M-ring protein FliF [Novosphingobium nitrogenifigens DSM 19370] gi|326208626|gb|EGD59429.1| flagellar M-ring protein FliF [Novosphingobium nitrogenifigens DSM 19370] Length = 561 Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 97/376 (25%), Positives = 166/376 (44%), Gaps = 29/376 (7%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110 LY L S+ +++ AL +A I + I++ +++V + KAR+ AA G ++ +G Sbjct: 72 LYTDLNDSERAQVTAALDKAAIRYTINNQTGAVTVGEDDLYKARMVAAADGA-LATPETG 130 Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170 ++ DK+ G + ++ A E E+ TI I G+ A RVH+ P+ F + A Sbjct: 131 EQMIDKL-PMGASRTVEGQRLQAARERELELTIMQIEGVEAVRVHLAEPEKSVFVRDNAP 189 Query: 171 PTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG 228 TASVM++ ++ AI +LVA +V L + V V+D G LL++ R Sbjct: 190 ATASVMVKLAKGRQLSDSQVTAIVNLVAGSVAGLSVDAVKVIDQQGHLLSSG---RPGDD 246 Query: 229 KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288 + + ++ ++ + L LG NF S + +L+MD Q YD V Sbjct: 247 DRIEMQARLEDKLRQQVETLLTPMLGTGNFSSEIQVDLDMDQQTSARESYDKQGVVRSET 306 Query: 289 RLSKDAQRSETSQPESAVTVEQNM-----------PHVSDRKVPLPRSLENTDKKEEQSN 337 + + +Q + P V N P + P + N Sbjct: 307 QTA--SQTTGNGAPVGVPGVLSNTPPPQTQPSPGAPTANTTPASPPAPSPTSSDTSSTRN 364 Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG 397 YE+ + T K+ RLS+AV ++ + + A G+ID +I ++VSAA G Sbjct: 365 YELGREVAVTNASPGKVRRLSVAVALSGAAMAK-----AKPGEID----QIKQLVSAAVG 415 Query: 398 INSRRGDTITITSMDF 413 + RGD +T+ +F Sbjct: 416 ADPTRGDQVTVVVRNF 431 >gi|312135854|ref|YP_004003192.1| flagellar m-ring protein flif [Caldicellulosiruptor owensensis OL] gi|311775905|gb|ADQ05392.1| flagellar M-ring protein FliF [Caldicellulosiruptor owensensis OL] Length = 560 Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 94/357 (26%), Positives = 174/357 (48%), Gaps = 21/357 (5%) Query: 22 ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81 ++I +S+IL+ +++ A + PHY ++ L+ + I L+E ID ++++ G+ Sbjct: 27 LVISSSIILLSVII---ALYITTRPHYVTIFSGLDPKEAAEIQNILNEQKIDSKVANGGT 83 Query: 82 SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 +I V + V +A++ A G P +SS + + +S T + T ++ E EI Sbjct: 84 TILVRDTDVDRAKMAAAQAGYPKNSSITFEDALKLSSSMTATESDKRRTFIKLKESEIQE 143 Query: 142 TIQSISGIVA-ARVHIVMPDMGSF--RKIGARPTASVMIRAINPSVYKSAEAIRHLVAAA 198 ++ +S + A V++ +P+ +F + +PTASV + E I+ VAA+ Sbjct: 144 ALKQMSDYIEDAVVNLSVPEDYTFALKDEATKPTASVKLTLKKSLGSNQIEGIQRFVAAS 203 Query: 199 VPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV- 255 V L +V ++D+ G L++N + + K L I A ++EIE + + L +++ Sbjct: 204 VEGLLPENVVIIDNKGNYLSSNSSDTTEGLSSKQLQIKIATKNEIEKKVKELLGSYVSSP 263 Query: 256 DNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQRSETSQPESAVTVEQNM 312 ++ + +V ++N D Q+I E Y P DS + S + +K+ +S T+ S V Sbjct: 264 EDVKVSVNLDMNFDMQKISETKYFPVLEDSGIVVSKKTTKEEAQS-TNSSSSGVPGTDTN 322 Query: 313 PHVSDRKVPLPRS--LENTDKKEEQSNYEINTKSIATTHD----NYKLERLSIAVVV 363 P + + P+ K +E NY+ N K I T NY +R SIAVV+ Sbjct: 323 PTQNTTQYPISSQGGQSTYTKTDETVNYQNNEKKIETIKAPGTINY--DRSSIAVVL 377 >gi|221309496|ref|ZP_03591343.1| flagellar MS-ring protein [Bacillus subtilis subsp. subtilis str. 168] gi|221313821|ref|ZP_03595626.1| flagellar MS-ring protein [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318745|ref|ZP_03600039.1| flagellar MS-ring protein [Bacillus subtilis subsp. subtilis str. JH642] gi|221323016|ref|ZP_03604310.1| flagellar MS-ring protein [Bacillus subtilis subsp. subtilis str. SMY] Length = 531 Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 94/379 (24%), Positives = 175/379 (46%), Gaps = 25/379 (6%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + ++ +F+K+ + L + +++ S + I++ + F ++ LY L + Sbjct: 1 MQMKNKTSEFWKNRSKLQK---ILMVSALAAIIIIGIIISVFASNSKMAPLYKDLSAEEA 57 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +I L + +S+ G+ ISVP V ++ +AA+GLP + S Y F + F Sbjct: 58 GQIKEELDAKKVPNELSNGGTVISVPEDQVDSLKVQMAAEGLPKTGS-IDYSFFGQNAGF 116 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTA--SVMIR 178 GLT ++ +V+A + E++ I + GI ++V I +P F +G +A + ++ Sbjct: 117 GLTDNEFDMVKVKATQTELSNLINEMDGIKNSKVMINLPKDAVF--VGEEQSAASASIVL 174 Query: 179 AINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ 235 I P I HLV+ +VPNL ++ ++D ++ + S S Q Sbjct: 175 QIQPGYTLDQSQINGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSDSDAGSYADSYSSQQ 234 Query: 236 AIQHEIEMNINKALAAFLGV----DNFRSAVVAELNMDTQQIREIVYDP-DSKVERSIRL 290 I+ ++E +I K + + LG D +V A+++ + E + +P D + I + Sbjct: 235 GIKSQVEKDIQKHVQSLLGTMMGQDKVVVSVTADIDFTKENRTEDIVEPVDKENMEGIAV 294 Query: 291 SKDAQRSETSQPESAV---TVEQNMPHVSDRKVPLPRSLE-NTDKKEEQSNYEINT--KS 344 S + + SET Q + A T V++ K + N +K + NYE+N K Sbjct: 295 SAE-KVSETYQGDGAANGGTAGTGEEDVTNYKADGENTESGNYEKNSNKINYEVNRIHKE 353 Query: 345 IATTHDNYKLERLSIAVVV 363 IA + YK+ L I V+V Sbjct: 354 IAESP--YKVRDLGIQVMV 370 >gi|127512297|ref|YP_001093494.1| flagellar MS-ring protein [Shewanella loihica PV-4] gi|126637592|gb|ABO23235.1| flagellar M-ring protein FliF [Shewanella loihica PV-4] Length = 565 Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 101/446 (22%), Positives = 203/446 (45%), Gaps = 31/446 (6%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y L K++ ++ ++ L + ++++I + + VP ++ L+ Sbjct: 56 LWAQEPEYRPLG-KMDTQEMVQVLDVLDKNKVNYQI--DVDVLKVPEDQYQDVKMMLSRA 112 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 G+ +S S Y K + FG++ M+ + E +ARTI+ + + A+V + +P Sbjct: 113 GIDNSPSRDDY--LSKDSGFGVSQRMEAARLKNSQEQNLARTIEELKSVSRAKVILAIPK 170 Query: 161 MGSFRKIGARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + ++P+A+V++ + + ++I +VA+AV L+ VTV D+ G+LL + Sbjct: 171 ENVFARNRSKPSATVVVNTRRGGLGQEEVDSIVDIVASAVHGLEPTRVTVTDANGRLLNS 230 Query: 220 NEMERNI--LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 + L +VQ + E I L LG +NF + V ++NMD + + Sbjct: 231 GSQTAGSARARRELELVQQKEAEYRSKIESILMPILGPENFTAQV--DVNMDFTSVEQTA 288 Query: 278 --YDPDSKVERS-IRLSKDAQRSETSQPESAVT----VEQNMPHVSDRKVPLPRSLENTD 330 Y+PD RS + + ++ + T A++ +E N+P + ++L + Sbjct: 289 KRYNPDLPAVRSEMTVENNSTGASTGGIAGALSNQPPMEANIPQQATGTSAQEQTLPGSS 348 Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI------DSY 384 KE NYE++T +I+ T + R V + G + + G++ + Sbjct: 349 HKEATRNYELDT-TISHTRQQVGVVRRVSVSVAVDFK----TGPAGEDGQVTRVARTEQE 403 Query: 385 LAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALV 444 L+ I +++ A G N++RGD I + ++ F++ + + + + R V+ L+ Sbjct: 404 LSNIRRLLEGAVGFNTQRGDMIEVVTVPFMDQLVEEAPALAIYEEPWFWRAIKLVMGGLI 463 Query: 445 FLVGTLLVTFLGLHALRRLHNIDDAK 470 LV L+ F+ L+RL D K Sbjct: 464 ILV---LILFVVRPMLKRLIYPDGQK 486 >gi|16078684|ref|NP_389503.1| flagellar MS-ring protein [Bacillus subtilis subsp. subtilis str. 168] gi|120324|sp|P23447|FLIF_BACSU RecName: Full=Flagellar M-ring protein gi|2633993|emb|CAB13494.1| flagellar basal-body M-ring protein [Bacillus subtilis subsp. subtilis str. 168] Length = 536 Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 92/377 (24%), Positives = 172/377 (45%), Gaps = 21/377 (5%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + ++ +F+K+ + L + +++ S + I++ + F ++ LY L + Sbjct: 6 MQMKNKTSEFWKNRSKLQK---ILMVSALAAIIIIGIIISVFASNSKMAPLYKDLSAEEA 62 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +I L + +S+ G+ ISVP V ++ +AA+GLP + S Y F + F Sbjct: 63 GQIKEELDAKKVPNELSNGGTVISVPEDQVDSLKVQMAAEGLPKTGS-IDYSFFGQNAGF 121 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLT ++ +V+A + E++ I + GI ++V I +P F ++ ++ I Sbjct: 122 GLTDNEFDMVKVKATQTELSNLINEMDGIKNSKVMINLPKDAVFVGEEQSAASASIVLQI 181 Query: 181 NPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI 237 P I HLV+ +VPNL ++ ++D ++ + S S Q I Sbjct: 182 QPGYTLDQSQINGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSDSDAGSYADSYSSQQGI 241 Query: 238 QHEIEMNINKALAAFLGV----DNFRSAVVAELNMDTQQIREIVYDP-DSKVERSIRLSK 292 + ++E +I K + + LG D +V A+++ + E + +P D + I +S Sbjct: 242 KSQVEKDIQKHVQSLLGTMMGQDKVVVSVTADIDFTKENRTEDIVEPVDKENMEGIAVSA 301 Query: 293 DAQRSETSQPESAV---TVEQNMPHVSDRKVPLPRSLE-NTDKKEEQSNYEINT--KSIA 346 + + SET Q + A T V++ K + N +K + NYE+N K IA Sbjct: 302 E-KVSETYQGDGAANGGTAGTGEEDVTNYKADGENTESGNYEKNSNKINYEVNRIHKEIA 360 Query: 347 TTHDNYKLERLSIAVVV 363 + YK+ L I V+V Sbjct: 361 ESP--YKVRDLGIQVMV 375 >gi|149188085|ref|ZP_01866380.1| flagellar M-ring protein [Vibrio shilonii AK1] gi|148838073|gb|EDL55015.1| flagellar M-ring protein [Vibrio shilonii AK1] Length = 582 Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 93/413 (22%), Positives = 190/413 (46%), Gaps = 28/413 (6%) Query: 19 RTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76 R +L+L+ I V +MLF F+V P L V E ++ + L + + +++ Sbjct: 55 RQIVLVLSISICVALIVMLF----FWVKEPEMRPLGV-YETEELIPVLDYLDQKKVQYKL 109 Query: 77 SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136 G+++SVP+S ++ + G+ + +SN+G ++ + FG++ +++ + E Sbjct: 110 E--GNALSVPASEYNNLKLDMVRAGI-NRASNTGDDILMQDMGFGVSQRLEQERLKLSRE 166 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHL 194 ++ + I+ + + ARV + +P F + +ASV + +V + E ++ + Sbjct: 167 RQLGKAIEQMKQVRTARVLLALPKQSVFVRHNQEASASVFLTLATGAVLRQQEVDSVVDM 226 Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKALAAF 252 VA+AVP + +TV D G+LL++ + + K + Q + + I+ L Sbjct: 227 VASAVPGMKPSRITVTDQHGRLLSSGSQDAASMARRKEQELEQNQEQALREKIDSVLIPI 286 Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------TSQPE 303 LG+ N+ + V EL+ + +DP++ RS +D ++QP Sbjct: 287 LGLGNYTAQVDIELDFSAVEQTRKRFDPNTPATRSEYTLEDYNNGNVVAGVPGALSNQPP 346 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 + ++ ++ + D + S+ KE N+E++T + + R ++AV + Sbjct: 347 ADASIPTDVAQMKDGSIMGQGSVH----KEATRNFELDTTISHERKQSGVVNRQTVAVAI 402 Query: 364 -NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 N+ + G Q + +S LA I +++ A G N RGD + + SM F E Sbjct: 403 KNRSSVNPDTGEVTYQPRSESELAAIRQVLIGAVGFNENRGDLLNVLSMTFEE 455 >gi|332994121|gb|AEF04176.1| flagellar MS-ring protein [Alteromonas sp. SN2] Length = 564 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 109/440 (24%), Positives = 209/440 (47%), Gaps = 47/440 (10%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 R L++ VI V I +F+ + P + L K+E ++ + I++R+ Sbjct: 39 RQMALVVVLVICVAIAVFIL--IWAQEPDFRPL-AKMETQELIETLDYMDANQIEYRL-- 93 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR-ALEG 137 G+++ V S R+ + QGL + SS++G ++ + FG++ + E+ R++ A E Sbjct: 94 EGNTVYVRSDEFQTIRLGMTRQGL-TGSSDAGTDIIMQDMGFGVSQRV-EMERLKHAREQ 151 Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLV 195 +IA TI+ IS I ARV + MP F + + +A+V++ A V E ++ +V Sbjct: 152 QIAATIEDISSIQKARVLLAMPKENVFARREKKASATVVLTAKRGKVIAGEEVDSVIDIV 211 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN--------INK 247 A+AV N++ VTV DS G+LL + + SLS ++EIE I+ Sbjct: 212 ASAVQNMEPSAVTVTDSNGRLLNSGSQD------SLSARARKEYEIERQREQEYLEKIDA 265 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREI--VYDPDSKVERSIRLSKDAQ---------R 296 L LG+ N+ + A+++MD + + Y+PD RS +++ Sbjct: 266 ILIPVLGIGNYTAQ--ADVSMDFTALEQTQRSYNPDLPAVRSEMINEQNSVGGGAMGIPG 323 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 + T+QP ++ N+P + + +L + K NYE++T T + + R Sbjct: 324 ALTNQP----PLDSNIPE--NPEAGAQATLPGSTSKVSTRNYELDTTISHTKKQSGVIRR 377 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF--L 414 LS++V V+ ++ G ++ + + L I +++ G + RGD++ + S+ F + Sbjct: 378 LSVSVAVDYLQVAGEDGTTSAEPRNQEALLNIRRLLQGGVGFDVTRGDSLEVVSVPFTRM 437 Query: 415 ENQLFNSGTV--QVSFMDIL 432 ++ + + Q +F+ IL Sbjct: 438 DDGVIEDAPIWEQPAFLPIL 457 >gi|205373372|ref|ZP_03226176.1| flagellar MS-ring protein [Bacillus coahuilensis m4-4] Length = 504 Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 92/353 (26%), Positives = 167/353 (47%), Gaps = 22/353 (6%) Query: 28 VILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPS 87 V+L+ I+L +A FF LY L ++ I +L I IS+ G++I VP+ Sbjct: 4 VVLLTILLIVAVTFFSTRTALVPLYSNLSPAETGSIKESLDSKGITSEISEGGTTILVPT 63 Query: 88 SMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSIS 147 MV ++ LA++GLP + S Y F + FG+T + ++ A++ E+A I+SI Sbjct: 64 EMVDTLKVQLASEGLPKTGSID-YSFFSQNAGFGMTDNEFNVLKLDAMQTELALLIKSIE 122 Query: 148 GIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA----IRHLVAAAVPNLD 203 G+ A V I +P+ G F + ++ ++ P Y+ ++ + +LV+ +VPNL Sbjct: 123 GVQDASVMISLPEQGIFVNDQTQQASASIVLQTQPG-YQFEQSQISGLYNLVSKSVPNLP 181 Query: 204 MGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVV 263 ++ +++ + + + ++S ++ +IE +I + + + LG + VV Sbjct: 182 TDNIVIMNQFFEYFELENVNNSSFAGNISSQMDVKKQIERDIQQQVQSMLGTLIGFNKVV 241 Query: 264 AELNMD---TQQIRE--IVYDPDSKVERSIRLSKDAQR-SETSQPESAVTVEQNMPHVSD 317 ++ D TQ+ RE +V D + I +S AQR +ET E A +P D Sbjct: 242 VSVSTDIDFTQEAREENLVVPVDEENLEGITMS--AQRITETFTGEGA-NAAGGVPAGED 298 Query: 318 RKVPLPRS-LENTD------KKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 L + + +TD + EE NYE++ YK+ + I V+V Sbjct: 299 PADSLGTTYVGSTDGDGDYERIEETMNYEVSRVMKEIVESPYKVRDIGIQVMV 351 >gi|255523704|ref|ZP_05390670.1| flagellar M-ring protein FliF [Clostridium carboxidivorans P7] gi|296186708|ref|ZP_06855110.1| flagellar M-ring protein FliF [Clostridium carboxidivorans P7] gi|255512573|gb|EET88847.1| flagellar M-ring protein FliF [Clostridium carboxidivorans P7] gi|296048745|gb|EFG88177.1| flagellar M-ring protein FliF [Clostridium carboxidivorans P7] Length = 529 Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 96/403 (23%), Positives = 180/403 (44%), Gaps = 39/403 (9%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 +I +VI I L + + S YD L+ + +D + L +D ++ G+S Sbjct: 28 IIFTAVIGALIYLGI----YFGSTKYDVLFSNMSSTDSAAVYKQLQADKVDAKV--QGNS 81 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP V K R+ + ++ + ++ + G+EL DK G T +I RAL+GE+ RT Sbjct: 82 ILVPKGQVDKLRMQMLSE-VNMTNGSQGFELLDKTK-LGSTDAEMKINYQRALQGELERT 139 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEAIRHLVAAAVP 200 I+ + I ARV +V+PD F K +ASV ++ S +A+ LV+ +V Sbjct: 140 IKGLPEIQNARVSLVLPDDTQFVKDTQPGSASVTLQMKQGQKLNSDQVKALVALVSGSVK 199 Query: 201 NLDMGDVTVLDSTGKLLTANEM--ERNILGKSLS-------IVQAIQHEIEMNINKALAA 251 N+ +V ++D LL+ + +++I S + + Q + E+E ++ L A Sbjct: 200 NVPKENVQIIDDKLALLSKDLFNDKKDITSDSTTSAEKQQELKQQYEKELEKKLSNMLEA 259 Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311 G D + V A+L+ D Q YDP +S+ +S+ + ++ + T Sbjct: 260 VYGKDKVKVKVNADLDFDAVQQDSTTYDP-----KSVVVSEHNVKDTSTGGQGTATSSSP 314 Query: 312 MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV 371 + + ++ E NY+++ T ++RL+ +V ++ Sbjct: 315 VDNNMTNTTTNNTGNGSSTHDESTKNYDVSEVKQKTIKAPGAVKRLTASVALD------- 367 Query: 372 LGRSADQGKID-SYLAEINKIVSAATGINSRRGDTITITSMDF 413 G +D + I+ + +A G +++RGDTI + + F Sbjct: 368 -------GNVDPTTKTSISNLAVSAIGYDAKRGDTINVEGIPF 403 >gi|312876496|ref|ZP_07736479.1| flagellar M-ring protein FliF [Caldicellulosiruptor lactoaceticus 6A] gi|311796707|gb|EFR13053.1| flagellar M-ring protein FliF [Caldicellulosiruptor lactoaceticus 6A] Length = 560 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 102/391 (26%), Positives = 184/391 (47%), Gaps = 29/391 (7%) Query: 15 TSLGRTRILIL---ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71 +SL +++ ++L +S+IL+ ++ AA + PHY ++ L+ + I LSE Sbjct: 17 SSLSKSQKIMLVVSSSIILLSVI---AAIYITTRPHYVTIFSGLDPKEAAEIQNILSEQK 73 Query: 72 IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131 ID + ++ G++I V + V +A++ A G P +SS + + +S T + T Sbjct: 74 IDSKAANGGTTILVRDTDVDRAKMAAAQAGYPKNSSITFEDALKLSSSMTATEADKRRTF 133 Query: 132 VRALEGEIARTIQSISGIVA-ARVHIVMPDMGSF--RKIGARPTASVMIRAINPSVYKSA 188 ++ E EI ++ +S + A V++ +P+ +F + +PTASV + Sbjct: 134 IKLKESEIQEALKQMSDYIEDAVVNLSVPEDYTFALKSEATKPTASVKLTLKKSLSSDQI 193 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNIN 246 E I+ VAA+V L +V ++D+ G L+ N + + K L + A ++EIE + Sbjct: 194 EGIQRFVAASVEGLLPENVVIIDNKGNYLSENSSDSTEGLSSKQLQLKIATKNEIEKKVK 253 Query: 247 KALAAFLGV-DNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQRSETSQ- 301 + L +++ ++ + +V ++N D Q+I E Y P DS + S + +K+ +S S Sbjct: 254 ELLGSYVSSPEDVKVSVNLDMNFDMQKISETKYSPVLEDSGIVVSKKTTKEEAQSTNSSS 313 Query: 302 ---PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD----NYKL 354 P + QN P + TD E NY+ N K I T NY Sbjct: 314 SGVPGTDTNPTQNTPQYPISSQGGQSTYTKTD---ETVNYQNNEKKIETIKAPGTINY-- 368 Query: 355 ERLSIAVVVNKG-RLTEVLGRSADQGKIDSY 384 + SIAVV+ + T+ +DQ K S+ Sbjct: 369 DNSSIAVVLYRYVTYTQEDFEKSDQAKTMSW 399 >gi|239996428|ref|ZP_04716952.1| flagellar MS-ring protein [Alteromonas macleodii ATCC 27126] Length = 564 Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 100/415 (24%), Positives = 187/415 (45%), Gaps = 39/415 (9%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 R L++ VI V I +F+ + P Y L K+E ++ + ID+++ Sbjct: 39 RQMALVVVLVICVAIAIFIL--IWSQEPDYRPL-AKMETQELIETLDYMDANQIDYKLE- 94 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR-ALEG 137 G+ + V S R+ + QGL + +S++G ++ + FG++ + E+ R++ A E Sbjct: 95 -GNIVYVRSDEFQNIRLGMTRQGL-TKASDAGTDIIMQDMGFGVSQRV-EMERLKHAREQ 151 Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLV 195 +IA TI+ I+ I ARV + MP F + + +A+V++ A +V E A+ +V Sbjct: 152 QIAATIEDIASIQKARVLLAMPKENVFARREKKASATVVLTAKRGAVIAGEEVDAVVDIV 211 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN--------INK 247 A+AV N++ VTV DS G+LL + + S+S ++EIE I+ Sbjct: 212 ASAVQNMEPSKVTVTDSNGRLLNSGSQD------SMSARARKEYEIERQREQEYLEKIDA 265 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE--------- 298 L LG+ N+ + ++ + + Y+PD RS + ++ Sbjct: 266 ILIPVLGIGNYTAQADVTMDFTAMEQTQRSYNPDLPAVRSEMIMEENSVGGGVGGIPGAL 325 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 ++QP + +N S + +P KE NYE++T T + RLS Sbjct: 326 SNQPPLDSNIPENAVGGSQQTMP------GRTAKESTRNYELDTTISHTKKQTGVIRRLS 379 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 ++V V+ ++ G + + I +++ G + RGD++ + S+ F Sbjct: 380 VSVAVDYTQVAGEDGAMTPTPRKQEEILNIRRLLQGGIGFDVTRGDSLEVVSVPF 434 >gi|138894740|ref|YP_001125193.1| flagellar MS-ring protein [Geobacillus thermodenitrificans NG80-2] gi|134266253|gb|ABO66448.1| Flagellar basal-body M-ring protein [Geobacillus thermodenitrificans NG80-2] Length = 527 Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 85/339 (25%), Positives = 146/339 (43%), Gaps = 23/339 (6%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 FF LY L + +I L + ++D G++I VP V ++ LAA+ Sbjct: 43 FFATRTEMVPLYSNLTPQEAGQIKATLDGRGVSAEVADGGTTIKVPKEQVDALKVELAAE 102 Query: 101 GLPSSSSNSG---YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 G+P NSG Y F + SFG+T + +++A++ E+A +++I G+ A+V I Sbjct: 103 GIP----NSGVIDYSFFGQNASFGMTDNEFNMVKLKAMQTELANLMKTIDGVEDAKVMIN 158 Query: 158 MPDMGSF-RKIGARPTASVMIRAINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDST 213 +P F +AS+++R P S E IR HLVA +VPNL ++ +++ Sbjct: 159 LPQPSVFVSDEKGEASASIVLRT-KPGYQFSDEQIRALYHLVAKSVPNLSTDNIVIMNQF 217 Query: 214 GKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD---T 270 + N + + Q I+ +IE +I + + LG + VV + D T Sbjct: 218 FEYFDLKNDSGNSTRATFASQQQIKKQIERDIQRQVQQMLGTMMGQDKVVVSVTADVDFT 277 Query: 271 QQIRE------IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPR 324 Q+ RE + + D + S++ K+ + P N + Sbjct: 278 QEKREENLVAPVGEENDEGIAVSVQRIKETYAGSGAPPGGTAGTGTN--ETPGYQGASGA 335 Query: 325 SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 + N ++ EE N E+N YK+ L I V+V Sbjct: 336 TNGNYERTEETINNEVNKIKKQIVESPYKIRDLGIQVMV 374 >gi|332140582|ref|YP_004426320.1| flagellar MS-ring protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327550604|gb|AEA97322.1| flagellar MS-ring protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 564 Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 103/417 (24%), Positives = 193/417 (46%), Gaps = 43/417 (10%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 R L++ VI V I +F+ + P Y L K+E ++ + I++++ Sbjct: 39 RQMALVVVLVICVAIAIFIL--IWSQEPDYRPL-AKMETQELIETLDYMDANQIEYKLE- 94 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR-ALEG 137 G+++ V S R+ + QGL ++SS++G ++ + FG++ + E+ R++ A E Sbjct: 95 -GNTVYVRSDEFQNIRLGMTRQGL-TNSSDAGTDIIMQDMGFGVSQRV-EMERLKHAREQ 151 Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLV 195 +IA TI+ I+ I ARV + P F + + +A+V++ A +V + A+A+ +V Sbjct: 152 QIAATIEDIASIQKARVLLATPKENVFARREKKASATVVLTAKRGAVIAGEEADAVVDIV 211 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN--------INK 247 A+AV N++ VTV DS G+LL + + S+S ++EIE I+ Sbjct: 212 ASAVQNMEPSKVTVTDSNGRLLNSGSQD------SMSARARKEYEIERQREQEYLEKIDA 265 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREI--VYDPDSKVERSIRLSKDAQRSE------- 298 L LG+ N+ + A++ MD I + Y+PD RS + ++ Sbjct: 266 ILIPVLGIGNYTAQ--ADVAMDFTAIEQTQRSYNPDLPAVRSEMIVEENSVGGGVGGIPG 323 Query: 299 --TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 ++QP + +N S + +P KE NYE++T T + R Sbjct: 324 ALSNQPPLDSNIPENAVGGSQQTMP------GRTAKESTRNYELDTTISHTKKQTGVIRR 377 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 LS++V V+ ++ G + + I +++ G + RGD++ + S+ F Sbjct: 378 LSVSVAVDYTQVAGEDGAMTPTPRKQEEILNIRRLLQGGIGFDVTRGDSLEVVSVPF 434 >gi|52080223|ref|YP_079014.1| flagellar MS-ring protein [Bacillus licheniformis ATCC 14580] gi|52785600|ref|YP_091429.1| flagellar MS-ring protein [Bacillus licheniformis ATCC 14580] gi|319645998|ref|ZP_08000228.1| FliF protein [Bacillus sp. BT1B_CT2] gi|52003434|gb|AAU23376.1| flagellar basal-body M-ring protein [Bacillus licheniformis ATCC 14580] gi|52348102|gb|AAU40736.1| FliF [Bacillus licheniformis ATCC 14580] gi|317391748|gb|EFV72545.1| FliF protein [Bacillus sp. BT1B_CT2] Length = 533 Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 90/379 (23%), Positives = 173/379 (45%), Gaps = 25/379 (6%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 + I ++ F+K+ + L + ++L ++ + ++L + +S LY L + Sbjct: 6 LQIKTKITDFWKNRSKLQK---ILLIGIVALAVILSIIIGIVASSNKMVPLYKDLSAEET 62 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +I L E I ++ +GS I VP V + ++ LAA+GLP S S Y F + F Sbjct: 63 GQIKQVLDEKGIPSEVATDGSVIKVPEEKVDELKVDLAAEGLPKSGSID-YSFFGENAGF 121 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG-ARPTASV-MIR 178 G+T ++ +V+A + E++ I+ I GI ++V I +P F +G +P AS ++ Sbjct: 122 GMTDNEFDVLKVKATQTELSNLIKGIDGIKDSKVMINLPKESVF--VGEEKPEASASIVL 179 Query: 179 AINPS---VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ 235 + P + HLV+ +VPNLD ++ ++D E S S + Sbjct: 180 QVKPGHTLDQNEINGLYHLVSKSVPNLDPKNIVIMDQNSTYYDQTGKESGSYADSYSSQR 239 Query: 236 AIQHEIEMNINKA----LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 ++ +IE ++ + L +G D +V ++++ + E + +P K E ++ Sbjct: 240 EVKAQIEKDLQRQIQTMLGTMMGQDKVVVSVTSDIDFTKENRTEDLVEPVDK-ENMEGIT 298 Query: 292 KDAQR-SETSQPESAV------TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKS 344 A+R SET + A T E ++ + ++ + + +K EE+ N E+N Sbjct: 299 VSAERVSETYSGQGAQAGGVNGTGENDVTNYAETEGGTGNG--DYEKSEERINNEVNRIH 356 Query: 345 IATTHDNYKLERLSIAVVV 363 YK+ L + V+V Sbjct: 357 KEIAESPYKIRDLGVQVMV 375 >gi|312792647|ref|YP_004025570.1| flagellar m-ring protein flif [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179787|gb|ADQ39957.1| flagellar M-ring protein FliF [Caldicellulosiruptor kristjanssonii 177R1B] Length = 560 Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 99/381 (25%), Positives = 178/381 (46%), Gaps = 26/381 (6%) Query: 22 ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81 +++ +S+IL+ ++ AA + PHY ++ L+ + I LSE ID + ++ G+ Sbjct: 27 LVVSSSIILLSVI---AAIYITTRPHYVTIFSGLDPKEAAEIQNILSEQKIDSKAANGGT 83 Query: 82 SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 +I V + V +A++ A G P +SS + + +S T + T ++ E EI Sbjct: 84 TILVRDTDVDRAKMAAAQAGYPKNSSITFEDALKLSSSMTATEADKRRTFIKLKESEIQE 143 Query: 142 TIQSISGIVA-ARVHIVMPDMGSF--RKIGARPTASVMIRAINPSVYKSAEAIRHLVAAA 198 ++ +S + A V++ +P+ +F + +PTASV + E I+ VAA+ Sbjct: 144 ALKQMSDYIEDAVVNLSVPEDYTFALKSEATKPTASVKLTLKKSLSSDQIEGIQRFVAAS 203 Query: 199 VPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNINKALAAFLGV- 255 V L +V ++D+ G L+ N + + K L + A ++EIE + + L +++ Sbjct: 204 VEGLLPENVVIIDNKGNYLSENSSDSTEGLSSKQLQLKIATKNEIEKKVKELLGSYVSSP 263 Query: 256 DNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQRSETSQ----PESAVTV 308 ++ + +V ++N D Q+I E Y P DS + S + +K+ +S S P + Sbjct: 264 EDVKVSVNLDMNFDMQKISETKYSPVLEDSGIVVSKKTTKEEAQSTNSSSSGVPGTDTNP 323 Query: 309 EQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD----NYKLERLSIAVVVN 364 QN P + TD E NY+ N K I T NY + SIAVV+ Sbjct: 324 TQNTPQYPISSQGGQSTYTKTD---ETVNYQNNEKKIETIKAPGTINY--DNSSIAVVLY 378 Query: 365 KG-RLTEVLGRSADQGKIDSY 384 + T+ +DQ K S+ Sbjct: 379 RYVTYTQEDFEKSDQAKTMSW 399 >gi|120598250|ref|YP_962824.1| flagellar MS-ring protein [Shewanella sp. W3-18-1] gi|146293672|ref|YP_001184096.1| flagellar MS-ring protein [Shewanella putrefaciens CN-32] gi|120558343|gb|ABM24270.1| flagellar M-ring protein FliF [Shewanella sp. W3-18-1] gi|145565362|gb|ABP76297.1| flagellar M-ring protein FliF [Shewanella putrefaciens CN-32] Length = 560 Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 100/431 (23%), Positives = 192/431 (44%), Gaps = 36/431 (8%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y L K+E ++ ++ L + I ++I + I VP + ++ L+ Sbjct: 53 LWAQEPEYRPLG-KMETQEMVQVLDVLDKNKIKYQIEVD--VIKVPEDKYQEVKLMLSRA 109 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 G+ +++ + D + FG++ M++ + E +AR I+ + + A+V + +P Sbjct: 110 GIDGGTTSKDFLTQD--SGFGVSQRMEQARLKHSQEENLARAIEQLQSVSRAKVILALPK 167 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + ++P+A+V+I + + +AI +VA+AV L+ VTV DS G+LL + Sbjct: 168 ENVFARNTSQPSATVVINTRRGGLGQGEVDAIVDIVASAVQGLEPSRVTVTDSNGRLLNS 227 Query: 220 NEME--RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 + + L +VQ + E I L LG DNF S V +++MD + + Sbjct: 228 GSQDGVSARARRELELVQQKEAEYRTKIESILVPILGPDNFTSQV--DVSMDFTAVEQTA 285 Query: 278 --YDPDSKVERSIRLSKDAQRSE-TSQPESAVTVEQNMPHVSDRKVPL----PRSLENTD 330 ++PD A RSE T + S +P + P+ P N Sbjct: 286 KRFNPDLP----------ALRSEMTVENNSTGGTTGGIPGALSNQPPMESDIPEDATNAS 335 Query: 331 KK--------EEQSNYEINTKSIATTHDNYKLERLSIAVVVN-KGRLTEVLGRSADQGKI 381 +K E N+E++T T + R+S++V V+ K + G+ A + Sbjct: 336 EKVVAGNSHREATRNFELDTTISHTRQQIGVVRRISVSVAVDFKPGAADENGQVARVART 395 Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441 + L I +++ A G +++RGD + + ++ F++ + + + ++ R + Sbjct: 396 EQELTNIRRLLEGAVGFSTQRGDVLEVVTVPFMDQLMEDIPSPELWEQPWFWRAVKLGVG 455 Query: 442 ALVFLVGTLLV 452 ALV LV L V Sbjct: 456 ALVILVLILAV 466 >gi|170725973|ref|YP_001759999.1| flagellar MS-ring protein [Shewanella woodyi ATCC 51908] gi|169811320|gb|ACA85904.1| flagellar M-ring protein FliF [Shewanella woodyi ATCC 51908] Length = 568 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 100/471 (21%), Positives = 210/471 (44%), Gaps = 40/471 (8%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 G + R ++LA I + + +F+ + P + L K+ D+ ++ L + + Sbjct: 31 GGVDMLRQVTMVLALAICLAVAVFVM--LWAQEPEFRPLG-KMATEDMIQVLDVLDKNKV 87 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 ++I G + VP + ++ L+ +G+ S+S+++ Y + + FG++ M++ Sbjct: 88 AYKIE--GDVVKVPEEKYQEVKLMLSREGVDSASNSTDY--LSQDSGFGVSQRMEQARLK 143 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV-YKSAEAI 191 + E +AR I+ + + A+V + +P F + ++P+A+V+I A + + ++I Sbjct: 144 HSQELNLARAIEELRSVTRAKVILAIPKENVFARNRSKPSATVVISARRAGLGQEEVDSI 203 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNINKAL 249 +VA+AV L+ VTV DS G+LL + + + L +VQ + E + L Sbjct: 204 VDIVASAVQGLEPTRVTVTDSNGRLLNSGSQDGVSARARRELELVQQKESEYRNKVESIL 263 Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIV--YDPDSKVERSIRLSKDAQRSE--------- 298 LG +NF S V +++MD + + ++PD RS +++ S Sbjct: 264 MPILGPENFTSQV--DVSMDFTAVEQTAKRFNPDLPALRSEMTVENSSNSGAIGGIPGAL 321 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 ++QP + QN D + + KE N+E++T +H ++ + Sbjct: 322 SNQPPMEANIPQN---ALDGEQSEANKNPGSSHKEATRNFELDT---TISHTRQQIGVVR 375 Query: 359 IAVVVNKGRLTEVLGRSADQGKI------DSYLAEINKIVSAATGINSRRGDTITITSMD 412 V G + + G++ D +A I +++ A G +++RGD I + ++ Sbjct: 376 RVSVSVAVDFKP--GPAGEDGQVNRVPRTDQEMANIRRLLEGAVGFSTQRGDVIEVVTVP 433 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 F++ + + ++ R + LV L L+ F+ L++L Sbjct: 434 FMDQLIDEAPAPELWEQPWFWRAIKLAMGGLVILA---LILFIVRPMLKKL 481 >gi|283856295|ref|YP_162369.2| flagellar M-ring protein FliF [Zymomonas mobilis subsp. mobilis ZM4] gi|283775291|gb|AAV89258.2| flagellar M-ring protein FliF [Zymomonas mobilis subsp. mobilis ZM4] Length = 619 Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 77/241 (31%), Positives = 126/241 (52%), Gaps = 10/241 (4%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 F +++P +LY +D I+ AL I + I+ I+V KAR+ LA Q Sbjct: 71 FLLSAPPQRDLYPGAGDADRASIASALETGGIHYNINRGNGVITVSEKDYYKARMLLAQQ 130 Query: 101 GLPSSSSNSGYELFDKVNSFGL-TSFMQEITRVRAL-EGEIARTIQSISGIVAARVHIVM 158 GLP S+ + + ++S L S E R+RA E ++ARTI++I + ARVHI Sbjct: 131 GLPKSAPDGDH----VISSLPLGASRAVEGERLRAAREVDLARTIETIDVVNQARVHIAE 186 Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 P F + TASVM++ + +A +AI++LVAA+VP + V+V+D G L Sbjct: 187 PQPSPFVREQVHGTASVMLKLMTGRNLSNAQVQAIQNLVAASVPGMAPEAVSVVDQAGHL 246 Query: 217 LTA-NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM-DTQQIR 274 L+A + + +I + L + Q ++ +NK L LG +N+ + V +L+ ++Q R Sbjct: 247 LSATSNADNDINDRQLRLQQTVEARYMDALNKLLVPLLGENNYTAEVHTDLDFTESQATR 306 Query: 275 E 275 E Sbjct: 307 E 307 Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/113 (23%), Positives = 59/113 (52%), Gaps = 12/113 (10%) Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS--YLAEINKIVSAA 395 YE+ + + ++R+S+A+ + R + GK S +A++ K++ A Sbjct: 418 YELGREVSVIRNPTGSVKRVSVAIAL----------RQINHGKPPSPEQVAQLEKLIKGA 467 Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 G ++ RGD + I+S DF+ +F+ Q S++ +L+R+ + ++ A + + G Sbjct: 468 IGFDASRGDVVAISSSDFMGGSVFSMPWYQNSWVPLLARNLSALLVAALVIFG 520 >gi|15615021|ref|NP_243324.1| flagellar MS-ring protein [Bacillus halodurans C-125] gi|10175078|dbj|BAB06177.1| flagellar basal-body M-ring protein [Bacillus halodurans C-125] Length = 525 Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 94/373 (25%), Positives = 164/373 (43%), Gaps = 39/373 (10%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 FF HY LY L + + I L I I+++G++I VP + V ++ LAA+ Sbjct: 43 FFSTRTHYVPLYSNLTLQETGNIKETLDARGISSEIANDGTTILVPETQVDALKVELAAE 102 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S + + Y F FG+T + A+E E+A I+S+ G+ A V I +P+ Sbjct: 103 GLPQSGTIN-YSTFRDSMGFGMTDNEFSLMERAAIESELADLIRSVDGVNQANVMITLPE 161 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLD------ 211 + + + ++ + P A +R HLV+ +VPNL + ++ +++ Sbjct: 162 QTLWVSDSQQEATASVVVDLAPGFQLDASQVRALYHLVSRSVPNLPIENIVIMNQMFEDY 221 Query: 212 ------STGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE 265 STG L+ E +R +I + I+ ++ N+ + L +G D +V + Sbjct: 222 LYDDHHSTGSTLSVYEQQR-------AIQRDIERDLTRNLQQMLGTLVGRDKVLVSVTTD 274 Query: 266 LNMDTQQIREIVYDP-DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPR 324 ++ + +E +P D + I +S + +ET E T E + V D P Sbjct: 275 IDFTQENRQEERVEPVDEENMEGIAVSVE-NITETYSGEG--TPEGGIEGVGDDIPNFPG 331 Query: 325 SLE----NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380 + + E++ NYE+N YK+ L I V+V E L AD+ Sbjct: 332 VYGTGEVDYELTEDRINYEVNRIRSDIVESPYKIRDLGIQVMVEPPEGMEEL--PADR-- 387 Query: 381 IDSYLAEINKIVS 393 LA+I +I+ Sbjct: 388 ----LADIQQILG 396 >gi|319427071|gb|ADV55145.1| flagellar M-ring protein FliF [Shewanella putrefaciens 200] Length = 560 Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 100/431 (23%), Positives = 191/431 (44%), Gaps = 36/431 (8%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y L K+E ++ ++ L + I ++I + I VP + ++ L+ Sbjct: 53 LWAQEPEYRPLG-KMETQEMVQVLDVLDKNRIKYQIEVD--VIKVPEDKYQEVKLMLSRA 109 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 G+ +++ + D + FG++ M++ + E +AR I+ + + A+V + +P Sbjct: 110 GIDGGTTSKDFLTQD--SGFGVSQRMEQARLKHSQEENLARAIEQLQSVSRAKVILALPK 167 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + ++P+A+V+I + + +AI +VA+AV L+ VTV DS G+LL + Sbjct: 168 ENVFARNTSQPSATVVINTRRGGLGQGEVDAIVDIVASAVQGLEPSRVTVTDSNGRLLNS 227 Query: 220 NEME--RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 + + L +VQ + E I L LG DNF S V +++MD + + Sbjct: 228 GSQDGVSARARRELELVQQKEAEYRTKIESILVPILGPDNFTSQV--DVSMDFTAVEQTA 285 Query: 278 --YDPDSKVERSIRLSKDAQRSE-TSQPESAVTVEQNMPHVSDRKVPL----PRSLENTD 330 ++PD A RSE T + S +P + P+ P N Sbjct: 286 KRFNPDLP----------ALRSEMTVENNSTGGTTGGIPGALSNQPPMESDIPEDATNAS 335 Query: 331 KK--------EEQSNYEINTKSIATTHDNYKLERLSIAVVVN-KGRLTEVLGRSADQGKI 381 +K E N+E++T T + R+S++V V+ K + G+ A + Sbjct: 336 EKVVAGNSHREATRNFELDTTISHTRQQIGVVRRISVSVAVDFKPGAADENGQVARVART 395 Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441 + L I +++ A G +++RGD + + ++ F++ + + ++ R + Sbjct: 396 EQELTNIRRLLEGAVGFSTQRGDVLEVVTVPFMDQLMEDIPAPELWEQPWFWRAVKLGVG 455 Query: 442 ALVFLVGTLLV 452 ALV LV L V Sbjct: 456 ALVILVLILAV 466 >gi|149182503|ref|ZP_01860976.1| flagellar M-ring protein [Bacillus sp. SG-1] gi|148849763|gb|EDL63940.1| flagellar M-ring protein [Bacillus sp. SG-1] Length = 529 Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 76/280 (27%), Positives = 133/280 (47%), Gaps = 15/280 (5%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 +QL F+ + T + + A VI++ I + F + LY L S+ I Sbjct: 11 EQLNTFWSARTKKQKGMYGVAALVIILAIAV---TGFLSTRTNLVPLYSNLAPSETGSIK 67 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L I I+D GS+I VPS MV ++ LAA+G+P+S S Y F + FG+T Sbjct: 68 ENLDGRGIVSEITDGGSTIMVPSEMVDTLKVELAAEGIPNSGSID-YSFFSQNAGFGMTD 126 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 + ++ A++ E+A ++ I G+ A V I +P+ G F ++ ++ P Sbjct: 127 NEFNVMKLDAMQTELANLMKGIEGVQDANVMITLPEKGVFISDAVEQASASIVLNTKPGF 186 Query: 185 ---YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQA--IQH 239 K +++ HLV+ +VP+L ++ +++ +L EME ++VQ I+ Sbjct: 187 NFDQKQIKSLYHLVSKSVPDLPTDNIVIMN---QLFEYFEMENENSSFGGTVVQQMDIKD 243 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMD---TQQIREI 276 +E +I K + + LG + VV + D TQ+ RE+ Sbjct: 244 RVEKDIQKQVQSMLGTLIGFNKVVVSVTTDIDFTQENREV 283 >gi|296330835|ref|ZP_06873310.1| flagellar MS-ring protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674353|ref|YP_003866025.1| flagellar basal-body M-ring protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296151840|gb|EFG92714.1| flagellar MS-ring protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412597|gb|ADM37716.1| flagellar basal-body M-ring protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 531 Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 94/379 (24%), Positives = 170/379 (44%), Gaps = 25/379 (6%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + ++ +F+K+ + L + +++ S + I++ + F +S LY L + Sbjct: 1 MQMKNKTSEFWKNRSKLQK---ILMISALAAIIIIGIIISVFASSSKMAPLYKDLSAEEA 57 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +I L + +S+ G+ ISVP V ++ +AA+GLP + S Y F + F Sbjct: 58 GQIKEELDAKKVPNELSNGGTVISVPEDQVDSLKVQMAAEGLPKTGS-IDYSFFGQNAGF 116 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLT ++ +V+A + E++ I + GI ++V I +P F ++ ++ I Sbjct: 117 GLTDNEFDMVKVKATQTELSNLINEMDGIKNSKVMINLPKDAVFVGEEQSAASASIVLQI 176 Query: 181 NPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI 237 P I HLV+ +VPNL ++ ++D ++ + S S Q I Sbjct: 177 QPGYTLEQSQINGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSDSDAGSYADSYSSQQGI 236 Query: 238 QHEIEMNINKALAAFLGV----DNFRSAVVAELNMDTQQIREIVYDP-DSKVERSIRLSK 292 + ++E +I K + + LG D +V A+++ + E + +P D + I +S Sbjct: 237 KSQVEKDIQKHVQSLLGTMMGQDKVVVSVTADIDFTKENRTEDIVEPVDKENMEGIAVSA 296 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVP-LPRSLENT-----DKKEEQSNYEINT--KS 344 + + SET Q + A D V ENT +K + NYE+N K Sbjct: 297 E-KVSETYQGDGAAN--GGTAGTGDEDVTNYEADGENTESGNYEKSSNKINYEVNRIHKE 353 Query: 345 IATTHDNYKLERLSIAVVV 363 IA + YK+ L I V+V Sbjct: 354 IAESP--YKVRDLGIQVMV 370 >gi|306820113|ref|ZP_07453761.1| flagellar M-ring protein FliF [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551891|gb|EFM39834.1| flagellar M-ring protein FliF [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 521 Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 91/402 (22%), Positives = 191/402 (47%), Gaps = 34/402 (8%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 + +I+ + I+V +++ ++ + Y LY L+++ +++++ +L + +++ D Sbjct: 23 KKQIITVGISIVVILIVMVSMIMYFTRTKYVTLYSNLDLNTMSKVTQSLDSMGVQYKV-D 81 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS-FMQE----ITRVR 133 + +SISVP S K I LA Q +P++ FD N + S FM + + Sbjct: 82 SQNSISVPESSRNKIMIDLAGQNIPNAK-------FDFSNLINMNSMFMSDDEKNTAKQY 134 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMI--RAINPSVYKSAE 189 AL +I+ I+SI + A+V + +P F + +P ASVM+ ++ + S Sbjct: 135 ALTNQISSIIESIPAVEKAQVTLAIPKNSEFVLSENKQQPKASVMLILKSGSQLSQDSIN 194 Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIVQAIQHEIEMNIN 246 I +VA +V L+ +VT+ G++L N +N G +L + + ++ +IE ++ Sbjct: 195 GIASMVAGSVEGLEPQNVTIHGPNGQILNQNSTGQNANMQTGTNLEMQEKVKRDIENSLQ 254 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES-- 304 LA G +NF V +LN D + + + P + E S + + Q+ E + ++ Sbjct: 255 NFLAPMFGYNNFSVMVSVKLNFDNETTQTKTFAPPVEGETSGLVRSEQQQKEQVENKNNA 314 Query: 305 ----AVTVEQNMPHVSDRKVPLPRSLENT-DKKEEQSNYEINTKSIATTHDNYKLERLSI 359 VT N + V + + ++ ++ E NYE+N ++ +++ Sbjct: 315 LGTPGVTSNNNEAGGTTNYVTVDENGNSSYNRSESTVNYELNEIVKNVEKARGTIDSVTV 374 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR 401 +V++NK L G +D+ + +I +++ ATG++++ Sbjct: 375 SVILNKDTLEG--GELSDEKR-----TQIVNLITTATGLDTK 409 >gi|302874589|ref|YP_003843222.1| flagellar M-ring protein FliF [Clostridium cellulovorans 743B] gi|307690800|ref|ZP_07633246.1| flagellar MS-ring protein [Clostridium cellulovorans 743B] gi|302577446|gb|ADL51458.1| flagellar M-ring protein FliF [Clostridium cellulovorans 743B] Length = 522 Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 108/464 (23%), Positives = 204/464 (43%), Gaps = 45/464 (9%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 F + + + I ++ +V++V I+ + Y L+ L+ +D I L E Sbjct: 14 IFNGMSKVRKISIGLITAVVIVAIVALI---ITTGKTKYTALFNNLDATDSQNIVTKLKE 70 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 I +++ ++ ++I VP VG+ R+ AA S + G E+FD + G++ + Sbjct: 71 EGIPYKVENSTNTIMVPDEQVGQLRLQYAAD---IKSGSIGLEIFDTSSQLGISDAEFNV 127 Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE 189 RAL+GEI RT++S + A+V+IV+P+ +F K A + S+ ++ + P S E Sbjct: 128 KYQRALQGEIERTVKSFEQVEDAKVNIVLPEDSTFVKDTAPASVSITLK-LKPGTELSEE 186 Query: 190 ---AIRHLVAAAVPNLDMGDVTVLDS-----TGKLLTANEMERNILGKSLSIVQAIQHE- 240 AI LV+ +V NL ++ ++D+ T KL +E E ++ S + + ++ E Sbjct: 187 QVKAIVSLVSTSVKNLPKENIQIVDNNMRLLTDKLFKGSEDESSVTA-STQLEEKMKFED 245 Query: 241 -IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK-VERSIRL-SKDAQRS 297 +E I L G ++ V A LN D+ D V ++I + + DA + Sbjct: 246 YLEEKILSQLEPMYGQGKVKANVNAVLNFDSVSTETTTVDKTPPIVSQNISINASDANNT 305 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLER 356 + P V+ N+ +V + + N + +NY + K I + + Sbjct: 306 TGNSP-----VDNNLSNVINEYMQNG----NISSANQTTNYSTDGKVIERKQNALGNVTA 356 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 +S AV ++ LTE LA++ K+V+ G + D + + +F N Sbjct: 357 VSAAVAIDNAELTE------------RQLADVKKLVNKTIGQAKQNEDETIVMAYEF--N 402 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460 + ++Q S ++ + A L ++G +GL A Sbjct: 403 PELKA-SIQKSLEEMEAAQKAEAQKKLYTMIGLGAAVVIGLVAF 445 >gi|312621568|ref|YP_004023181.1| flagellar m-ring protein flif [Caldicellulosiruptor kronotskyensis 2002] gi|312202035|gb|ADQ45362.1| flagellar M-ring protein FliF [Caldicellulosiruptor kronotskyensis 2002] Length = 560 Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 97/379 (25%), Positives = 178/379 (46%), Gaps = 28/379 (7%) Query: 5 DQLLQFFKSGTSLGRTRILIL---ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 D L + +SL +++ ++ +S+IL+ +++ A + PHY ++ L+ + Sbjct: 7 DYLKNIKEKWSSLSKSQKIMFVVSSSIILLSVIV---AIYITTRPHYVTIFSGLDPKEAA 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I LS+ ID + ++ G++I V V +A++ A G P +SS + + +S Sbjct: 64 EIQNILSDQKIDSKAANGGTTILVRDKDVDRAKMAAAQAGYPKNSSITFEDALKLSSSMT 123 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVA-ARVHIVMPDMGSF--RKIGARPTASVMIR 178 T + T ++ E EI + ++ +S + A V++ +P+ +F + +PTASV + Sbjct: 124 ATETDKRRTFIKLKESEIQQALKQMSDYIEDAVVNLSIPEDYTFALKSEAEKPTASVKLT 183 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQA 236 E I+ VAA+V L +V ++D+ G L+ N + + K L + A Sbjct: 184 LKKSLSSDQIEGIQRFVAASVEGLLPENVVIIDNKGNYLSDNSSDTTEGLSSKQLQLKIA 243 Query: 237 IQHEIEMNINKALAAFLGV-DNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSK 292 ++EIE I + L +++ ++ + +V ++N D Q+I E Y P DS + S + +K Sbjct: 244 TKNEIEKKIKELLGSYVSSPEDVKVSVNLDMNFDMQKISETKYSPVLEDSGIVVSKKTTK 303 Query: 293 DAQRSETSQ----PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 + +S S P + QN P + TD E NY+ N K I T Sbjct: 304 EEAQSTNSSSSGVPGTDTNPTQNAPQYPITSQGGQSTYTKTD---ETVNYQNNEKKIETI 360 Query: 349 HD----NYKLERLSIAVVV 363 NY ++ SIAVV+ Sbjct: 361 KAPGTINY--DKSSIAVVL 377 >gi|241761170|ref|ZP_04759259.1| flagellar M-ring protein FliF [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374789|gb|EER64250.1| flagellar M-ring protein FliF [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 619 Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 76/241 (31%), Positives = 126/241 (52%), Gaps = 10/241 (4%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 F +++P +LY +D I+ AL I + I+ I+V KAR+ LA Q Sbjct: 71 FLLSAPPQRDLYPGAGDADRASIASALETGGIHYNINRGNGVITVSEKDYYKARMLLAQQ 130 Query: 101 GLPSSSSNSGYELFDKVNSFGL-TSFMQEITRVRAL-EGEIARTIQSISGIVAARVHIVM 158 GLP S+ + + ++S L S E R+RA E ++ARTI++I + ARVHI Sbjct: 131 GLPKSAPDGDH----VISSLPLGASRAVEGERLRAAREVDLARTIETIDVVNQARVHIAE 186 Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 P F + TASVM++ + +A +AI++LVAA++P + V+V+D G L Sbjct: 187 PQPSPFVREQVHGTASVMLKLMTGRNLSNAQVQAIQNLVAASLPGMAPEAVSVVDQAGHL 246 Query: 217 LTA-NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM-DTQQIR 274 L+A + + +I + L + Q ++ +NK L LG +N+ + V +L+ ++Q R Sbjct: 247 LSATSNADNDINDRQLRLQQTLEARYMDALNKLLVPLLGENNYTAEVHTDLDFTESQATR 306 Query: 275 E 275 E Sbjct: 307 E 307 Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/113 (23%), Positives = 59/113 (52%), Gaps = 12/113 (10%) Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS--YLAEINKIVSAA 395 YE+ + + ++R+S+A+ + R + GK S +A++ K++ A Sbjct: 418 YELGREVSVIRNPTGSVKRVSVAIAL----------RQINHGKPPSPEQVAQLEKLIKGA 467 Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 G ++ RGD + I+S DF+ +F+ Q S++ +L+R+ + ++ A + + G Sbjct: 468 IGFDASRGDVVAISSSDFMGGSVFSMPWYQNSWVPLLARNLSALLVAALVIFG 520 >gi|85710179|ref|ZP_01041244.1| flagellar M-Ring protein [Erythrobacter sp. NAP1] gi|85688889|gb|EAQ28893.1| flagellar M-Ring protein [Erythrobacter sp. NAP1] Length = 547 Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 125/436 (28%), Positives = 201/436 (46%), Gaps = 50/436 (11%) Query: 24 ILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV--ALSEANIDFRISDNGS 81 + A V L+ +++ A F + LY L SDV R V AL I + I ++ Sbjct: 44 LAALVGLIAVVVAGALYFAIAQGPQRILYSDL--SDVERAKVVQALETGGIGYAIDNSTG 101 Query: 82 SISVPSSMVGKARIHLAAQ-GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR-ALEGEI 139 +I+V + + +AR+ +A+ GL + S + D + G +S E R+R A E E+ Sbjct: 102 AITVAETDLYRARMLVASDTGLAAPEGASA--MLDAI-PLG-SSRTLEGERLRLAREREL 157 Query: 140 ARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP-SVYKS-AEAIRHLVAA 197 TI+ I GI + RVH+ P+ +F + P+ASVM+R ++ S+ +S EAI +LV+ Sbjct: 158 MLTIREIDGIESVRVHLATPERSAFVRENNPPSASVMVRLVSGRSLGRSQVEAIVNLVSG 217 Query: 198 AVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDN 257 +VP L V V+D G+LL+A E LG L + + + ++ + LA LG N Sbjct: 218 SVPGLTPDKVRVVDQNGRLLSAAREE--ALG-GLVLQREFEAKLREQLGTLLAPLLGEGN 274 Query: 258 FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV----TVEQNMP 313 F S V EL + YD R + +++RS T AV V N P Sbjct: 275 FSSQVQVELEQEESTSARESYD------REGVIRSESERSATRMAGGAVGGIPGVAANTP 328 Query: 314 HVSDRKVPLPRSL------ENTDKKEE---QSNYEINTKSIATTHDNYKLERLSIAVVVN 364 + V P + D+ +E Q NYE+ + T+ L +LS+AV V+ Sbjct: 329 PPDAQLVDGPPEATAVDGEQAADRDQEVSTQRNYELGREVAVTSTRPGGLVKLSVAVAVS 388 Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424 L +A+Q + ++SAA G + RGDT+ + F N+ T Sbjct: 389 DAALAAAAPMTAEQ---------LQSLISAAVGADEGRGDTVEVVVSAF-----ENAQTQ 434 Query: 425 QVSFMDILSRHFATVI 440 ++F + + FA V+ Sbjct: 435 PLAFYE--QKWFADVL 448 >gi|222530139|ref|YP_002574021.1| flagellar M-ring protein FliF [Caldicellulosiruptor bescii DSM 6725] gi|222456986|gb|ACM61248.1| flagellar M-ring protein FliF [Caldicellulosiruptor bescii DSM 6725] Length = 560 Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 93/359 (25%), Positives = 170/359 (47%), Gaps = 25/359 (6%) Query: 22 ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81 ++ +S+IL+ +++ A + PHY ++ L+ + I LS+ ID + ++ G+ Sbjct: 27 FVVSSSIILLSVIV---AIYITTRPHYITIFSGLDPKEAAEIQNILSDQKIDSKAANGGT 83 Query: 82 SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 +I V + V +A++ A G P +SS + + +S T + T ++ E EI + Sbjct: 84 TILVRDTDVDRAKMAAAQAGYPKNSSITFEDALKLSSSMTATEADKRRTFIKLKESEIQQ 143 Query: 142 TIQSISGIVA-ARVHIVMPDMGSF--RKIGARPTASVMIRAINPSVYKSAEAIRHLVAAA 198 ++ +S + A V++ +P+ +F + +PTASV + E I+ VAA+ Sbjct: 144 ALKQMSDYIEDAVVNLSIPEDYTFALKSEAEKPTASVKLTLKKSLSSDQIEGIQRFVAAS 203 Query: 199 VPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV- 255 V L +V ++D+ G L+ N + + K L + A ++EIE I + L +++ Sbjct: 204 VEGLLPENVVIIDNKGNYLSDNSSDTTEGLSSKQLQLKIATKNEIEKKIKELLGSYVSSP 263 Query: 256 DNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQRSETSQ----PESAVTV 308 ++ + +V ++N D Q+I E Y P DS + S + +K+ +S S P + Sbjct: 264 EDVKVSVNLDMNFDMQKISETKYSPVLEDSGIVVSKKTTKEEAQSTNSSSSGVPGTDTNP 323 Query: 309 EQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD----NYKLERLSIAVVV 363 QN P + TD E NY+ N K I T NY ++ SIAVV+ Sbjct: 324 TQNAPQYPITSQGGQSTYTKTD---ETVNYQNNEKKIETIKAPGTINY--DKSSIAVVL 377 >gi|260776484|ref|ZP_05885379.1| flagellar M-ring protein FliF [Vibrio coralliilyticus ATCC BAA-450] gi|260607707|gb|EEX33972.1| flagellar M-ring protein FliF [Vibrio coralliilyticus ATCC BAA-450] Length = 582 Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 93/422 (22%), Positives = 193/422 (45%), Gaps = 40/422 (9%) Query: 19 RTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76 R +L+L+ I V +MLF F+V P L + ++ + L + +++++ Sbjct: 55 RQVVLVLSISICVALIVMLF----FWVREPEMRPLGA-YDTEELIPVLDYLDQEKVEYKL 109 Query: 77 SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136 +G++ISVP+S ++++ GL ++ +G E+ + FG++ +++ + E Sbjct: 110 --DGNTISVPASDYNSLKLNMVRAGL-NNERQAGDEILMQDMGFGVSQRLEQERLKLSRE 166 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHL 194 ++A+ I+ + + ARV + +P F + +ASV + + K E ++ + Sbjct: 167 RQLAKAIEEMKQVRKARVLLALPKQSVFVRHNQEASASVFLTLRTGTSLKQEEVDSVVDM 226 Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN--------IN 246 VA+AVP + +TV D G+LL++ + + S + +HE+E I+ Sbjct: 227 VASAVPGMKPTRITVTDQHGRLLSSGSQD------AASAARRKEHELERKQEQALRDKID 280 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE-------- 298 L LG N+ + V +L+ + +DP++ RS +D Sbjct: 281 SVLIPILGFGNYTAQVDIQLDFSAIEQTRKSFDPNTPSTRSEYTLEDYNNGNVVAGVPGA 340 Query: 299 -TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 ++QP + ++ Q++ + D + S+ KE N+E++T + + R Sbjct: 341 LSNQPPADASIPQDVAQMKDGSLMGQGSVH----KEATRNFELDTTISHERRQSGIVNRQ 396 Query: 358 SIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 ++AV + N+ + G + Q D+ L I +++ A G + RGD + + SM F E Sbjct: 397 TVAVAIKNRASVNPDTGETTYQPLSDAELQSIRQVLIGAVGFSESRGDLLNVLSMQFAEP 456 Query: 417 QL 418 ++ Sbjct: 457 EV 458 >gi|302872571|ref|YP_003841207.1| flagellar M-ring protein FliF [Caldicellulosiruptor obsidiansis OB47] gi|302575430|gb|ADL43221.1| flagellar M-ring protein FliF [Caldicellulosiruptor obsidiansis OB47] Length = 560 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 91/342 (26%), Positives = 161/342 (47%), Gaps = 18/342 (5%) Query: 37 MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIH 96 +AA + PHY ++ L+ + I LSE ID + ++ G++I V + V +A++ Sbjct: 39 IAAIYITTRPHYVTIFSGLDPKEAAEIQNILSEQKIDSKAANGGTTILVRDTDVDRAKMA 98 Query: 97 LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVA-ARVH 155 A G P +SS + + +S T + T ++ E EI ++ +S + A V+ Sbjct: 99 AAQAGYPKNSSITFEDALKLSSSMTATESDKRRTFIKLKESEIQEALKQMSDYIEDAVVN 158 Query: 156 IVMPDMGSF--RKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDST 213 + +P+ +F + +PTASV + E I+ VAA+V L +V ++D+ Sbjct: 159 LSIPEDYTFALKDEATKPTASVKLTLKKSLGSDQIEGIQRFVAASVEGLLPENVVIIDNK 218 Query: 214 GKLLTAN--EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV-DNFRSAVVAELNMDT 270 G L+ N + + K L I A ++EIE + + L ++ ++ + +V ++N D Sbjct: 219 GNYLSDNSSDTTEGLSSKQLQIKVATKNEIEKKVKELLGNYVNSPEDVKVSVNLDMNFDM 278 Query: 271 QQIREIVYDP---DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRS-- 325 Q+I E Y P DS + S + +K+ +S T+ S V P + + P+ Sbjct: 279 QKISETKYSPVLEDSGIVVSKKTTKEEAQS-TNSSSSGVPGTDTNPTQNTTQYPITSQGG 337 Query: 326 LENTDKKEEQSNYEINTKSIATTHD----NYKLERLSIAVVV 363 K +E NY+ N K I T NY ++ SIAVV+ Sbjct: 338 QSTYTKSDETVNYQNNEKKIETIKAPGTINY--DKSSIAVVL 377 >gi|226327718|ref|ZP_03803236.1| hypothetical protein PROPEN_01591 [Proteus penneri ATCC 35198] gi|225203422|gb|EEG85776.1| hypothetical protein PROPEN_01591 [Proteus penneri ATCC 35198] Length = 158 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 44/109 (40%), Positives = 67/109 (61%), Gaps = 2/109 (1%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++ SP Y LY L D I L++ N+ +R+S NGS+I VP + V + R+ LA Sbjct: 46 LWLQSPDYKVLYSNLSDKDGGEIVTQLTQMNVPYRLSQNGSAIMVPDNQVHELRLKLAQA 105 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149 GLP + +G+EL DK FG++ F ++I RALEGE+ARTI+++ + Sbjct: 106 GLPKGGA-AGFELLDK-EKFGISQFSEQINYQRALEGELARTIETLGPV 152 >gi|269103174|ref|ZP_06155871.1| flagellar M-ring protein FliF [Photobacterium damselae subsp. damselae CIP 102761] gi|268163072|gb|EEZ41568.1| flagellar M-ring protein FliF [Photobacterium damselae subsp. damselae CIP 102761] Length = 581 Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 94/415 (22%), Positives = 188/415 (45%), Gaps = 36/415 (8%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 R IL+LA I V +++ + ++ P L E S++ + AL + I++++ Sbjct: 50 RQVILVLAVAICVSLIIMVM--MWIKEPEMRPLG-NYETSELITVLDALDQKKIEYQL-- 104 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 +G++I VP+ ++ LA G S+ G ++ K FG++ +++ + E + Sbjct: 105 DGNTIRVPADQYSAIKLTLARDGW-SAPEAQGDDILLKNMGFGVSQRLEQERLKLSRERQ 163 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVA 196 +AR I+ I + A+V + +P F + +A+V + + + E +I +VA Sbjct: 164 LARAIEQIKQVRKAQVLLALPKQSVFVRNNQDASATVFLTLSSGATLGQQEVDSIVDMVA 223 Query: 197 AAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKALAAFLG 254 +AVP L VTV D G+LL++ + + K + + + + I+ L LG Sbjct: 224 SAVPGLKPTRVTVTDQHGRLLSSGTEDPSATAKRKEYELERKQEQTLREKIDAILMPILG 283 Query: 255 VDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------TSQPESA 305 + N+ S V ++ + + + +DP RS + +D S ++QP + Sbjct: 284 LGNYTSQVDVSMDFSSLEETQKQFDPSKPATRSEFILEDLNNSNRVGGIPGALSNQPPAD 343 Query: 306 VTVEQNMPHVSDRKVPLPRSL-ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 + Q++ + K SL + + +EE NYE++T + R +++V V+ Sbjct: 344 SAIPQDVKDLQSGK-----SLSDGSVHREETRNYELDTTIRHKRSQTGTIARQTVSVAVD 398 Query: 365 KGRLTEVLGRSADQGKI------DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 +T+ GK+ D+ L +I +++ G + RGD + + SM F Sbjct: 399 YKNITD-----PKTGKVTRVPVSDAELEKIRRLLMGGVGFSQARGDLLEVISMPF 448 >gi|84514816|ref|ZP_01002179.1| Flagellar FliF M-ring protein [Loktanella vestfoldensis SKA53] gi|84510975|gb|EAQ07429.1| Flagellar FliF M-ring protein [Loktanella vestfoldensis SKA53] Length = 616 Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 124/505 (24%), Positives = 213/505 (42%), Gaps = 68/505 (13%) Query: 24 ILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSI 83 ++A+ +LV + L + + +P L+ L ++ + AL D +I I Sbjct: 43 VIAAALLVVLGLIL--YLILQAPQRTTLFAALPEAEKAAVMDALRNNGTDVQIDPVTGDI 100 Query: 84 SVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTI 143 +VP+ +R+ LAAQGLP S + GY + + G + ++ + ++ E E+AR+I Sbjct: 101 TVPTGEFYNSRMSLAAQGLPQSMPD-GYSVLTDM-PMGTSRSVESMRLKQSQEVELARSI 158 Query: 144 QSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLVAAAVP 200 I + A+RVH+ +P+ +F + PTASV ++ + P S + AI +LV+++V Sbjct: 159 NEIDVVSASRVHLAIPERSAFARNAQNPTASVFVQVM-PGRSLSEQQVMAIVNLVSSSVA 217 Query: 201 NLDMGDVTVLDSTGKLL--TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNF 258 NL VTV++ G+LL T N+ ++ + L +++ I L +G N Sbjct: 218 NLPKTSVTVVNQNGQLLSDTVNDPATDLADRQLEYQLRLENIYRTRIESLLTPIVGPGNV 277 Query: 259 RSAVVAELNMDTQQIREIVYDPDSKVERSIRL------------------SKDAQRSETS 300 + V +++ + E + PD S ++ + R E Sbjct: 278 SAQVSLDIDFTRTERTEDMVIPDQSALLSEQVAVEEEVAEASQGIPGTVGNTPPPRPELE 337 Query: 301 QPESAV-----------------TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTK 343 QP A TV + V P L ++D NYE+ Sbjct: 338 QPAGAADGQAPAEAGATAEAGANTVAEIYAPVDRNTGPGQPRLRSSDST--MRNYEV--- 392 Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI--------DSYLAEINKIVSAA 395 S T +N + R++ V R T + + D + S L E+ +VS Sbjct: 393 SRTVTSENSPMTRINGVHVAVLLRETLPVAPTEDGDAVAAPAIGLDPSRLDEVKSLVSRT 452 Query: 396 TGINSRRGDTITITSMDFLENQL----FNSGTVQVSFMDILSRHFATVINALVFLVGTLL 451 GI+ RGDT+ ++S+ F+ + + T V D R + NAL+ +V L Sbjct: 453 VGIDESRGDTLIVSSLPFISPEAVISSLSGSTELVWHEDPWIREM--MRNALMVIV--LA 508 Query: 452 VTFLGLHALRRLHNIDDAKKGEVGG 476 V LGL ++ L A GE GG Sbjct: 509 VVTLGL--IKPLLTQFLASSGESGG 531 >gi|307264866|ref|ZP_07546428.1| secretory protein YscJ/FliF family protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306920124|gb|EFN50336.1| secretory protein YscJ/FliF family protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 253 Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 65/222 (29%), Positives = 117/222 (52%), Gaps = 15/222 (6%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 +QL F+ + ++ I+A ++ + I L + + VN P+Y LY L + D + Sbjct: 10 EQLTNFWNKFDKKQKIQLGIIAILLFIGISLLV---YIVNRPNYVVLYSDLSIKDAGAVV 66 Query: 65 VAL-SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV-NSFGL 122 L +E I ++IS++G++I VP+ + R+ LA +G+P G+ D + NS Sbjct: 67 EKLKTEFKIPYKISNDGTTILVPAQYKDEVRMKLATEGIPQ----GGFSFQDAMNNSLAT 122 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMIRAI 180 T + + L+ EI ++++I G+ A V+IV+PD +F + TA+VM+ + Sbjct: 123 TDQERRQKYLYFLQNEIQNSLKTIDGVQDAIVNIVVPDQNAFVLSNTTNQATAAVML-TL 181 Query: 181 NPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLLTA 219 P V S+ ++ V+ +V L +VTV+D+ GK+LTA Sbjct: 182 KPGVTLSSSQVKGIIDFVSKSVEGLKPENVTVIDNNGKILTA 223 >gi|308173583|ref|YP_003920288.1| flagellar basal-body M-ring protein [Bacillus amyloliquefaciens DSM 7] gi|307606447|emb|CBI42818.1| flagellar basal-body M-ring protein [Bacillus amyloliquefaciens DSM 7] Length = 536 Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 66/239 (27%), Positives = 117/239 (48%), Gaps = 12/239 (5%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110 LY L + +I L + ++D G+ I VP S V ++ LAA+GLP + S Sbjct: 53 LYKDLSAEEAGQIKEELDTKKVSSELADGGTVIMVPESQVDSLKVQLAAEGLPKTGSID- 111 Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA- 169 Y F K FGLT ++ +V A + E++ I + GI +++V I MP F +G Sbjct: 112 YSFFGKNAGFGLTDNEFDVLKVDATQTELSNLINEMDGIKSSKVMINMPKEAVF--VGED 169 Query: 170 RPTASV-MIRAINP--SVYKSA-EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN 225 +P AS ++ I P S+ +S + HLV+ +VPNL ++ ++D ++ Sbjct: 170 QPEASASIVLQIKPGYSLDQSQINGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSDSGAG 229 Query: 226 ILGKSLSIVQAIQHEIEMNINKALAAFLGV----DNFRSAVVAELNMDTQQIREIVYDP 280 + S + Q I+ ++E +I K + + LG D +V A+++ ++ E + +P Sbjct: 230 SVSDSYASQQGIKSQVEKDIQKHVQSLLGTMMGQDKVVVSVTADIDFTKEKRTEDIVEP 288 >gi|328553485|gb|AEB23977.1| flagellar MS-ring protein [Bacillus amyloliquefaciens TA208] Length = 531 Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 66/239 (27%), Positives = 117/239 (48%), Gaps = 12/239 (5%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110 LY L + +I L + ++D G+ I VP S V ++ LAA+GLP + S Sbjct: 48 LYKDLSAEEAGQIKEELDTKKVSSELADGGTVIMVPESQVDSLKVQLAAEGLPKTGSID- 106 Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA- 169 Y F K FGLT ++ +V A + E++ I + GI +++V I MP F +G Sbjct: 107 YSFFGKNAGFGLTDNEFDVLKVDATQTELSNLINEMDGIKSSKVMINMPKEAVF--VGED 164 Query: 170 RPTASV-MIRAINP--SVYKSA-EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN 225 +P AS ++ I P S+ +S + HLV+ +VPNL ++ ++D ++ Sbjct: 165 QPEASASIVLQIKPGYSLDQSQINGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSDSGAG 224 Query: 226 ILGKSLSIVQAIQHEIEMNINKALAAFLGV----DNFRSAVVAELNMDTQQIREIVYDP 280 + S + Q I+ ++E +I K + + LG D +V A+++ ++ E + +P Sbjct: 225 SVSDSYASQQGIKSQVEKDIQKHVQSLLGTMMGQDKVVVSVTADIDFTKEKRTEDIVEP 283 >gi|74055034|gb|AAZ95839.1| FliF [Aeromonas hydrophila] Length = 570 Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 100/427 (23%), Positives = 189/427 (44%), Gaps = 28/427 (6%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 F S T + R LIL I + I +F+ + P L V+ + L + Sbjct: 31 FLSNTDVLRQITLILGLAICLAIAVFIL--LWGKEPDMRPLGTYSTQELVSTLDY-LDQQ 87 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS--SNSGYELFDKVNSFGLTSFMQE 128 I + + G S+ V + R+ L GL +++ SN G + K +SFG++ M E Sbjct: 88 KIPYEVE--GKSVLVSAEKYADIRLRLTRAGLATNTDASNDGESILLKDSSFGVSQRM-E 144 Query: 129 ITRVR-ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187 R++ + E ++A I+ + A+V + +P F + +P+A+V++ ++ + Sbjct: 145 TERLKLSRERQLASAIEQFQNVAKAQVLLAIPKDNVFARNERKPSATVVLNLKGNALGQG 204 Query: 188 -AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMN 244 ++I +VA+AV L+ VTV D G+LL + + K ++ Q + E + Sbjct: 205 EVDSIVDMVASAVHGLEPTRVTVTDQNGRLLNSGSQDPVSAQTRKEFAMQQKQEVEYKQK 264 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS-IRLSKDAQRSE----- 298 I+ L LG DN+ + V L+ Q+ Y+PD RS + L +++ Sbjct: 265 IDAILIPVLGADNYTAEVDLSLDFSQQEQTRKTYNPDLPAVRSEMTLEENSANGSSGGVP 324 Query: 299 ---TSQPESAVTVEQNM--PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 ++QP +A + Q P+ RS +KE N+E++T Sbjct: 325 GALSNQPPAASNIPQQATGPNADASAAASGRS-----RKEATRNFELDTTVSHIRRQMGG 379 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 + R++++V V+ T G+ + + L + +++S G + RGDT+ + ++ F Sbjct: 380 IRRMTVSVAVDYKSATAADGKVTREARTQPELDTLRRLLSGGLGFDVTRGDTLEVVAIPF 439 Query: 414 LENQLFN 420 +L N Sbjct: 440 NRPELEN 446 >gi|319649567|ref|ZP_08003723.1| flagellar M-ring protein [Bacillus sp. 2_A_57_CT2] gi|317398729|gb|EFV79411.1| flagellar M-ring protein [Bacillus sp. 2_A_57_CT2] Length = 533 Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 92/377 (24%), Positives = 167/377 (44%), Gaps = 25/377 (6%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + ++ +++ S T +T ++I A+ I I+L AA F LY L S+ I Sbjct: 9 IGKVKEYWSSRTKKQKT-VMIGAAAIC--ILLIAAAAFLSTRTTLVPLYSNLTPSETGTI 65 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 +L + I+D G++I VP V ++ LAA+G+P S S Y F + G+T Sbjct: 66 KESLDTRGVVSEIADGGTTIKVPEEAVDSLKVELAAEGIPKSGS-IDYSFFSQNAGIGMT 124 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 + ++ A++ E+A ++ I G+ A+V I +P+ G F + ++ ++ P Sbjct: 125 ENEFNVLKLEAMQTELANLMKGIDGVNDAKVMINLPEKGIFVNDSSEEASASIVLNTKPG 184 Query: 184 VYKSAE----AIRHLVAAAVPNLDMGDVTVLDSTGKLL----TANEMERNILGKSLSIVQ 235 Y+ E A+ HL A ++PNL ++ + + + N + I + Sbjct: 185 -YQFEESQIQALYHLAAKSIPNLPTDNIVITNQFFEYFDLKNKQNSSSESTFAAQHEIKK 243 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE--IVYDPDSKVERSIRLSKD 293 I+ +++ + L +G D +V A+++ TQ+ RE +V D + I +S Sbjct: 244 EIERDVQRQVQNMLGTLMGQDKVVVSVTADIDF-TQENREENLVTPVDEENMEGIAIS-- 300 Query: 294 AQR---SETSQPESAVTVE----QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346 AQ+ + T E A + P +D V S + ++ EE N E+N Sbjct: 301 AQKITETFTGNGEGAGGTPALGGNDEPAGTDSYVATGDSSGDYERIEETINNEVNKIRRE 360 Query: 347 TTHDNYKLERLSIAVVV 363 YK+ L I V+V Sbjct: 361 IVESPYKVRDLGIQVMV 377 >gi|23099010|ref|NP_692476.1| flagellar MS-ring protein [Oceanobacillus iheyensis HTE831] gi|22777238|dbj|BAC13511.1| flagellar basal-body M-ring protein [Oceanobacillus iheyensis HTE831] Length = 532 Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 84/340 (24%), Positives = 156/340 (45%), Gaps = 16/340 (4%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 F + +Y LY L + +I+ L + F + + S+I+VP V + LA+ Sbjct: 43 FASTNTNYVPLYNNLSTQEAGQITTELESRGVPFELENGRSTITVPEEQVDTLLLDLASM 102 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP++ S Y F + S+G+T + ++ A++ E+A I+S+ GI A+V I +P+ Sbjct: 103 GLPNNGS-IDYSFFSENTSWGITDNEFNVMKLDAMQTELANLIKSVEGIQDAQVMINVPE 161 Query: 161 MGSF-RKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + +AS+++ ++ E + HLVA AVPNL ++ +++ + Sbjct: 162 EPVFATDVTGEASASIVLNTQPGYQFEGNQIEGLHHLVAKAVPNLPEENIVIMNQYFEYF 221 Query: 218 TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV----DNFRSAVVAELNMDTQQI 273 N ++ + + Q ++ E+E +I + L LG +N +V A+++ + Sbjct: 222 DQN-TQQTANQDTYTHQQTVKKEVERDIQRRLQQMLGTMVGNENIVVSVTADIDFTQENR 280 Query: 274 REIVYDP-DSKVERSIRLSKDA-QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDK 331 +E + +P D + + +S + Q S + + + + + VP S +N D Sbjct: 281 KEELVEPVDIENMEGLPVSLETIQESYVGEGAAEAGTNEEV-GTGEGDVPGYNSGDNGDG 339 Query: 332 K----EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367 + +E NYE N YKL L I V VN R Sbjct: 340 EYELDKETINYEFNRIRRDIVESPYKLRDLGIQVAVNNTR 379 >gi|328911724|gb|AEB63320.1| flagellar basal-body M-ring protein [Bacillus amyloliquefaciens LL3] Length = 510 Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 66/239 (27%), Positives = 117/239 (48%), Gaps = 12/239 (5%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110 LY L + +I L + ++D G+ I VP S V ++ LAA+GLP + S Sbjct: 27 LYKDLSAEEAGQIKEELDTKKVSSELADGGTVIMVPESQVDSLKVQLAAEGLPKTGSID- 85 Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA- 169 Y F K FGLT ++ +V A + E++ I + GI +++V I MP F +G Sbjct: 86 YSFFGKNAGFGLTDNEFDVLKVDATQTELSNLINEMDGIKSSKVMINMPKEAVF--VGED 143 Query: 170 RPTASV-MIRAINP--SVYKSA-EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN 225 +P AS ++ I P S+ +S + HLV+ +VPNL ++ ++D ++ Sbjct: 144 QPEASASIVLQIKPGYSLDQSQINGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSDSGAG 203 Query: 226 ILGKSLSIVQAIQHEIEMNINKALAAFLGV----DNFRSAVVAELNMDTQQIREIVYDP 280 + S + Q I+ ++E +I K + + LG D +V A+++ ++ E + +P Sbjct: 204 SVSDSYASQQGIKSQVEKDIQKHVQSLLGTMMGQDKVVVSVTADIDFTKEKRTEDIVEP 262 >gi|289811515|ref|ZP_06542144.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 158 Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 42/117 (35%), Positives = 69/117 (58%), Gaps = 2/117 (1%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 44 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 103 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ Sbjct: 104 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLA 158 >gi|254506888|ref|ZP_05119027.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus 16] gi|219550173|gb|EED27159.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus 16] Length = 582 Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 96/423 (22%), Positives = 192/423 (45%), Gaps = 42/423 (9%) Query: 19 RTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76 R +L+L+ I V +MLF F+V P L E ++ + L + +D+++ Sbjct: 55 RQVVLVLSISICVALIVMLF----FWVKEPEMRPLGA-YETEELIPVLDYLDQQKLDYKL 109 Query: 77 SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR-AL 135 +G++I VPSS ++ + GL + N+G ++ + FG++ + E+ R++ + Sbjct: 110 --DGNTILVPSSEYNTLKLDMVRAGL-NQEKNAGDDILLQDMGFGVSQRL-ELERLKLSR 165 Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRH 193 E ++++ I+ + + ARV + +P F + +ASV + + K E ++ Sbjct: 166 ERQLSKAIEEMKQVRKARVLLALPKQSVFVRHNQEASASVFLTLATGANLKQEEVDSVVD 225 Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN--------I 245 +V++AVP + +TV D G+LL++ + S + +HE+E I Sbjct: 226 MVSSAVPGMKPNRITVTDQHGRLLSSGSQD------PASAARRKEHELERKQEQALRDKI 279 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE------- 298 + L LG N+ + V +L+ + +DP++ RS +D Sbjct: 280 DSVLIPILGFGNYTAQVDIQLDFSAVEQTRKSFDPNTPSTRSEYTLEDYNNGSVVAGVPG 339 Query: 299 --TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 ++QP + ++ Q++ + D S+ KE NYE++T + R Sbjct: 340 ALSNQPPADASIPQDVAQMKDGTGLGQGSVH----KEATRNYELDTTISHERRQTGVVNR 395 Query: 357 LSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 ++AV + N+ + G + Q D+ L+ I +++ A G + RGD + + SM F E Sbjct: 396 QTVAVAIKNRAIVNPDTGETTYQPLSDADLSSIRQVLIGAVGYSEARGDLLNVLSMQFAE 455 Query: 416 NQL 418 ++ Sbjct: 456 PEV 458 >gi|146296280|ref|YP_001180051.1| flagellar M-ring protein FliF [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409856|gb|ABP66860.1| flagellar M-ring protein FliF [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 562 Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 89/340 (26%), Positives = 160/340 (47%), Gaps = 18/340 (5%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 A + PHY L+ L+ D +I L E ID ++++ G++I V + + KA++ A Sbjct: 41 ALYVTTRPHYVVLFSGLDPKDAAQIQQTLLEQKIDSKVTNGGTTILVKDTDIDKAKMVAA 100 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV-AARVHIV 157 G P SS + + +S T + T ++ E EI R ++ ++ + A V++ Sbjct: 101 LSGYPKSSEITFEDALKLSSSMTATESDKRRTFIKLKESEIQRALKEMTDYIDDAVVNLS 160 Query: 158 MPDMGSF--RKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 +P+ +F + +PTASV + E I+ VAA+V L +V ++D+ G Sbjct: 161 VPEDYTFALKDETTKPTASVKLTLKKSLSSDQIEGIQRFVAASVEGLLPENVVIIDNKGN 220 Query: 216 LLTANEME--RNILGKSLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQ 272 L+ N + I K L I A ++EIE + + L ++ ++ + +V ++N D Q+ Sbjct: 221 YLSDNSFDSSEGISSKQLQIKIATKNEIERKVKELLGNYVSSPEDVKVSVNLDMNFDMQK 280 Query: 273 IREIVYDP---DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPL--PRSLE 327 + E Y P D + S + +K+ +S + + N P ++ + PL Sbjct: 281 VSETKYSPVLEDGGIVVSRKTTKEEAQSTNAGANGIPGTDTN-PTQNNPQYPLSSQGGQS 339 Query: 328 NTDKKEEQSNYEINTKSIATTHD----NYKLERLSIAVVV 363 + K +E NY+ N K I T NY ++ SIAVV+ Sbjct: 340 SYSKTDETVNYQNNEKKIETIKAPGTINY--DKSSIAVVL 377 >gi|312884912|ref|ZP_07744602.1| flagellar MS-ring protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309367389|gb|EFP94951.1| flagellar MS-ring protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 583 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 101/430 (23%), Positives = 185/430 (43%), Gaps = 40/430 (9%) Query: 8 LQFFKSGTSLGRTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 L F L R +L+L+ I V +MLF F+V P L V + ++ I Sbjct: 45 LDFGAGDLDLLRQVVLVLSISICVALIVMLF----FWVREPEMRPLGV-YDTEELIPILD 99 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L + +D+ + G++I VP S ++ + GL + +G ++ + FG++ Sbjct: 100 YLDQQKLDYELE--GNTILVPVSDFNSLKLDMVRAGL-NQEREAGDDILMQDMGFGVSQR 156 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 +++ + E ++++ I+ + + ARV + +P F + +ASV + + Sbjct: 157 LEQERLKLSRERQLSKAIEELKQVRKARVLLALPKQSVFVRHNQEASASVFLTLKTGANL 216 Query: 186 KSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEM 243 K E ++ +VA+AVP + VTV D G+LL++ + S + +HE+E Sbjct: 217 KQEEVDSVVDMVASAVPGMKPNRVTVTDQHGRLLSSGSED------PASSARRKEHELER 270 Query: 244 N--------INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 I+ L LG N+ + V EL+ + V+DPD RS +D Sbjct: 271 KQEQALREKIDSVLIPILGFGNYTAQVDIELDFSAVEQTRKVFDPDKPATRSEYTLEDYN 330 Query: 296 RSE---------TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346 ++QP + ++ Q++ + D S+ KE N+EI+T Sbjct: 331 NGNMVAGIPGALSNQPPADASIPQDVAQMKDGTALGQGSVH----KEATRNFEIDTTISH 386 Query: 347 TTHDNYKLERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 + R ++AV V N+ + G + Q ++ L I +I+ G + RGD Sbjct: 387 ERRQTGVVNRQTVAVAVKNRSVVNPDTGETTYQPISEAELNSIKQILIGTVGFSESRGDL 446 Query: 406 ITITSMDFLE 415 + + SM F E Sbjct: 447 LNVLSMQFAE 456 >gi|114562360|ref|YP_749873.1| flagellar MS-ring protein [Shewanella frigidimarina NCIMB 400] gi|114333653|gb|ABI71035.1| flagellar M-ring protein FliF [Shewanella frigidimarina NCIMB 400] Length = 558 Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 105/450 (23%), Positives = 200/450 (44%), Gaps = 31/450 (6%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y L K+E +++ + L + ID++I N + VP + ++ L+ Sbjct: 51 MWAQEPDYRPLG-KMETAEMILVLDVLDKNQIDYQI--NVDVVKVPEDKYQEVKLLLSRA 107 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 G+ SS+ + Y ++ + FG++ M++ ++ E +AR I+ + I A+V + +P Sbjct: 108 GVQSSTQANDY--LNQDSGFGVSQRMEQARLKQSQEQNLARAIEELKSISRAKVILALPK 165 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + ++P+A+V++ + + +AI +V +AV L+ VTV DS G+LL + Sbjct: 166 ENVFARNASKPSATVVVNVRRGGLGQEEIDAIVDIVGSAVQGLEPARVTVTDSNGRLLNS 225 Query: 220 NEME--RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 + + + +VQ + E I L LG +NF S V +N + Sbjct: 226 GSQDGASSRARREQELVQQQEAEYRKKIESILMPILGPENFTSQVDVNMNFTAVEQTAKR 285 Query: 278 YDPDSKVERS---IRLSKDAQRSE------TSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 + PD RS I + Q S ++QP +E ++P V+ ++ Sbjct: 286 FSPDLPAIRSEMIIERNSSGQNSGGIPGALSNQP----PMESDIPQVAGEAT--ASTMSG 339 Query: 329 TDKKEEQSNYEINTKSIATTHDN---YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385 KE NYE++T +I+ T + +S+A+ G++ E G A + + L Sbjct: 340 DSSKEATRNYELDT-TISHTRQQIGVVRRVSVSVAINFKPGQVDEN-GVVARVPRTEQEL 397 Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445 I +++ A G +++RGD + + ++ F++ + + R + A+V Sbjct: 398 TNIRRLLEGAVGFSTQRGDALEVVTVPFMDQLIEALPEPDMWEEPWFWRAIKLALGAIVI 457 Query: 446 LVGTLLVTFLGLHALRRLHNI---DDAKKG 472 LV L V L L + I DD + G Sbjct: 458 LVLILAVVRPMLKKLTNPNGINMPDDIRPG 487 >gi|163750550|ref|ZP_02157788.1| flagellar M-ring protein [Shewanella benthica KT99] gi|161329705|gb|EDQ00694.1| flagellar M-ring protein [Shewanella benthica KT99] Length = 567 Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 100/441 (22%), Positives = 198/441 (44%), Gaps = 34/441 (7%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y L K++ ++ ++ L + ID+RI + I VP ++ L+ + Sbjct: 56 LWAQEPEYRPLG-KMDTQEMVKVLDVLDKNKIDYRIDID--VIKVPEDQYQAVKLMLSRE 112 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR-ALEGEIARTIQSISGIVAARVHIVMP 159 G+ +S ++ Y + + FG++ M E+ R++ + E +AR I+ + I A+V + +P Sbjct: 113 GIDGASRSNDY--LSQDSGFGVSQRM-ELARLKHSQELNLARAIEELRSINRAKVILAIP 169 Query: 160 DMGSFRKIGARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + A+P+A+V++ + + +A+ +VA+AV L VTV DS G+LL Sbjct: 170 KENVFARNRAKPSATVVLNVRRGGLGQEEVDAVVDIVASAVQGLIPTRVTVTDSNGRLLN 229 Query: 219 ANEME--RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 + + + + Q + E + L LG +NF S V ++ MD + + Sbjct: 230 SGSQDAVSARARRESDLAQQKEAEYRTKVQSILMPILGPENFTSQV--DVTMDFTAVEQT 287 Query: 277 V--YDPDSKVERSIRLSKDAQRSETS---------QPESAVTVEQNMPHVSDRKVPLPRS 325 Y+PD RS + ++ ++ QP + QN +D ++ R Sbjct: 288 SKRYNPDLPALRSEMIVENNSNGGSASGIPGALSNQPPMESDIPQNA-LTTDAQLNSAR- 345 Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI---D 382 + +E N+E+NT T + R+S++V VN T LG ++ + Sbjct: 346 -RGSSHREATRNFELNTTISHTRQQVGTVRRISVSVAVNYK--TGTLGEDGQINRVPRTE 402 Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINA 442 LA I +++ A G +++RGD + + ++ F++ + ++ R + Sbjct: 403 QELANIRRLLEGAVGFSTQRGDVLEVVTVPFMDQLIEELPAPELWEQPWFWRALKLGMGG 462 Query: 443 LVFLVGTLLVTFLGLHALRRL 463 ++ L L+ F+ L+RL Sbjct: 463 VIILA---LILFIVRPMLKRL 480 >gi|154686037|ref|YP_001421198.1| flagellar MS-ring protein [Bacillus amyloliquefaciens FZB42] gi|154351888|gb|ABS73967.1| FliF [Bacillus amyloliquefaciens FZB42] Length = 536 Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 61/230 (26%), Positives = 107/230 (46%), Gaps = 8/230 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110 LY L + +I L + ++D G+ I VP S V ++ LAA+GLP + S Sbjct: 53 LYKDLSAEEAGKIKEELDTKKVSSELADGGTVIKVPESQVDSLKVQLAAEGLPKTGS-ID 111 Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA- 169 Y F + FGLT ++ +V A + E++ I + GI +++V I MP F +G Sbjct: 112 YSFFGQNAGFGLTDNEFDVLKVEATQTELSNLINEMDGIKSSKVMINMPKEAVF--VGED 169 Query: 170 RPTASV-MIRAINPSV---YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN 225 +P AS ++ + P + HLV+ +VPNL ++ ++D ++ Sbjct: 170 QPAASASIVLQMKPGYSLDQNQINGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSDSGAG 229 Query: 226 ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 + S + Q I+ ++E +I K + + LG + VV + D +E Sbjct: 230 SVSDSYASQQGIKSQVEKDIQKHVQSLLGTMMGQDKVVVSVTADVDFTKE 279 >gi|4378873|gb|AAD19741.1| flagellar M-Ring protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 555 Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 77/241 (31%), Positives = 121/241 (50%), Gaps = 10/241 (4%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 F +++P +LY D I+ AL I + I I+V KAR LA Q Sbjct: 71 FLLSAPTQRDLYPGARDGDRASIARALETGGIHYNIKRGNGVITVSEKEFYKARDLLAQQ 130 Query: 101 GLPSSSSNSGYELFDKVNSFGL-TSFMQEITRVRAL-EGEIARTIQSISGIVAARVHIVM 158 GLP S+ + ++S L S E R+RA E +ARTI++I + ARVHI Sbjct: 131 GLPKSAPDG----VHVISSLPLGASRAVEAKRLRAAREVVLARTIETIDVVNQARVHIAE 186 Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 P F + TASVM++ + +A +AI++LVAA+VP + V+V+D G L Sbjct: 187 PQPSPFVREQVHGTASVMLKLMTGRNLSNAQVQAIQNLVAASVPGMAPEAVSVVDQAGHL 246 Query: 217 LTA-NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM-DTQQIR 274 L+A + + +I + L + Q ++ +NK L LG +N+ + V +L+ ++Q R Sbjct: 247 LSATSNADNDINDRQLRLQQTVEARYMDALNKLLVPLLGENNYTAEVHTDLDFTESQATR 306 Query: 275 E 275 E Sbjct: 307 E 307 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/113 (23%), Positives = 59/113 (52%), Gaps = 12/113 (10%) Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS--YLAEINKIVSAA 395 YE+ + + ++R+S+A+ + R + GK S +A++ K++ A Sbjct: 418 YELGREVSVIRNPTGSVKRVSVAIAL----------RQINHGKPPSPEQVAQLEKLIKGA 467 Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 G ++ RGD + I+S DF+ +F+ Q S++ +L+R+ + ++ A + + G Sbjct: 468 IGFDASRGDVVAISSSDFMGGSVFSMPWYQNSWVPLLARNLSALLVAALVIFG 520 >gi|323496555|ref|ZP_08101609.1| flagellar MS-ring protein [Vibrio sinaloensis DSM 21326] gi|323318399|gb|EGA71356.1| flagellar MS-ring protein [Vibrio sinaloensis DSM 21326] Length = 582 Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 94/423 (22%), Positives = 193/423 (45%), Gaps = 42/423 (9%) Query: 19 RTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76 R +L+L+ I V +MLF F+V P L E ++ + L + +++++ Sbjct: 55 RQVVLVLSISICVALIVMLF----FWVKEPEMRPLGA-YETEELIPVLDYLDQQKMEYKL 109 Query: 77 SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR-AL 135 +G++I VP+S R+ + GL + N+G ++ + FG++ + E+ R++ + Sbjct: 110 --DGNTILVPTSEYNSLRLDMVRAGL-NQEKNAGDDILLQDMGFGVSQRL-ELERLKLSR 165 Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRH 193 E ++++ I+ + + ARV + +P F + +ASV + + K E ++ Sbjct: 166 ERQLSKAIEEMKQVRKARVLLALPKQSVFVRHNQEASASVFLTLKTGANLKQEEVDSVVD 225 Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN--------I 245 +V++AVP + +TV D G+LL++ + S + +HE+E I Sbjct: 226 MVSSAVPGMKPNRITVTDQHGRLLSSGSQD------PASAARRKEHELERKQEQALRDKI 279 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE------- 298 + L LG N+ + V EL+ + +DP++ RS +D Sbjct: 280 DSVLIPILGFGNYTAQVDIELDFSAVEQTRKSFDPNTPSTRSEYTLEDYNNGSVVAGVPG 339 Query: 299 --TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 ++QP + ++ Q++ + D + + + KE N+E++T + R Sbjct: 340 ALSNQPPADASIPQDVAQMKDGS----GTGQGSVHKEATRNFELDTTISHERRQTGVVNR 395 Query: 357 LSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 ++AV + N+ + G + Q ++ LA I +++ A G + RGD + + SM F E Sbjct: 396 QTVAVAIKNRAIVNPDTGETTYQPLSEADLASIRQVLIGAVGFSEARGDLLNVLSMQFAE 455 Query: 416 NQL 418 ++ Sbjct: 456 PEV 458 >gi|295696113|ref|YP_003589351.1| flagellar M-ring protein FliF [Bacillus tusciae DSM 2912] gi|295411715|gb|ADG06207.1| flagellar M-ring protein FliF [Bacillus tusciae DSM 2912] Length = 506 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 80/265 (30%), Positives = 120/265 (45%), Gaps = 26/265 (9%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 R R LI + ++L +A ++ +P Y +Y L+ ++ L E I +R S Sbjct: 23 RRRWLIAGAA--AGLVLLVALSWYALAPRYVVIYQNLDAKAAGEVTNKLDELKIPYRTS- 79 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYE-LFDKVNSFGLTSFMQEITRVRALEG 137 G + VP +AR+ LA GLP S GYE LF N G++ + + ALEG Sbjct: 80 -GGQVMVPEQDADRARMQLAIAGLPKSGY-VGYEDLFGNTNIGGMSDNEFNVKSLMALEG 137 Query: 138 EIARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMIRAINPSVYKSAE---AIR 192 +A TI+ I G+ +VH+VMP+ F + +G + ASV ++ I P + I+ Sbjct: 138 SLAGTIRQIDGVEDVQVHLVMPEQHMFVEQPVG-QAKASVFLK-IAPGAQLGPDQVAGIQ 195 Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLTANE--------MERNILGKSLSIVQAIQHEIEMN 244 LV+ +V L+ DV V+D G L E +R IL I + + I Sbjct: 196 QLVSHSVKGLNATDVAVVDQNGVRLDHPEDAGTAVSNADRQIL-----IQKQYEQLISDR 250 Query: 245 INKALAAFLGVDNFRSAVVAELNMD 269 + AL LG N A LN D Sbjct: 251 LQSALGRILGPGNVVVLANARLNFD 275 >gi|225569979|ref|ZP_03779004.1| hypothetical protein CLOHYLEM_06074 [Clostridium hylemonae DSM 15053] gi|225161449|gb|EEG74068.1| hypothetical protein CLOHYLEM_06074 [Clostridium hylemonae DSM 15053] Length = 536 Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 113/433 (26%), Positives = 191/433 (44%), Gaps = 44/433 (10%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L QL F G +T+I I + + I + +N Y L+ + + +I Sbjct: 8 LGQLKDFL--GKYSKKTKI-IAGTAAVAVIAAAVIIALVLNHKDYTTLFTGVTEEEATKI 64 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L E+ +DF+ +NG I V + K R L +G P S Y++F + NS G+T Sbjct: 65 IGKLQESGVDFQYKENG-DILVDEKVADKTRADLVYEGYPKSGFT--YDVFTE-NSGGMT 120 Query: 124 SFMQ-EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF------RKIGARPTASVM 176 + + E ++ L+ I TI+ G+ A+V+I + + + K G P+ASV+ Sbjct: 121 TDSEKETYKLYDLQDRIGATIRFFDGVKDAKVNIALKEEQKYVLEEDGEKAGT-PSASVV 179 Query: 177 I---RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS- 232 + +PS K A AI+ LVA +VP ++M +V V D G ++ N+ + G + + Sbjct: 180 VTMESGESPS-EKQAAAIQRLVAKSVPEMEMENVAVFDGNGIEVSVNKDGSSASGSNATE 238 Query: 233 -IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE-IVYDPDSKVERSIRL 290 I Q I+ +I + L +F G +N R + ++NM+ + IRE Y K++ + Sbjct: 239 EIAQLIEMQISKKVINVLGSFYGAENIRVSARGKVNME-KVIRESTTYTTPEKIDEKDKT 297 Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQS-------NYEINTK 343 + S T++ S+ P TD S +Y +N Sbjct: 298 GIVSSES-TTKDTVNGGGAGTGVAGSETNADTPEYNAGTDNNASGSASESATRDYLVNQV 356 Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI-NSRR 402 D LE L+++V +N G++A G I + E+ +V ATGI + R Sbjct: 357 KEQGELDTGVLEDLTVSVAIN--------GKNA--GNIS--MNELRDLVGNATGIAAADR 404 Query: 403 GDTITITSMDFLE 415 + ITI + F E Sbjct: 405 LEKITIVNAPFYE 417 >gi|217076889|ref|YP_002334605.1| flagellar M-ring protein FliF [Thermosipho africanus TCF52B] gi|217036742|gb|ACJ75264.1| flagellar M-ring protein FliF [Thermosipho africanus TCF52B] Length = 534 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 107/403 (26%), Positives = 195/403 (48%), Gaps = 31/403 (7%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 LD +F L + + + + S +LV I++ + +N+P Y L +D Sbjct: 7 FLDSFSKFPDFWKGLKKNQKITMLS-LLVAILIAVVLTVILNAPKYVLLISANNETDAGA 65 Query: 63 ISVALSEANIDFRISDNGSSISVPSSM-VGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L I +++ + G+ I +PSS V + R+ LA+ G SS+ G+EL D+ +SFG Sbjct: 66 IIQQLEAQGIPYKV-EAGNRIFIPSSYNVYEVRMKLASSGA-LGSSSKGFELLDQ-SSFG 122 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAI 180 TSF +++ RAL+GE+ RTI +I+G+ ARVH+ +P + R A ASV + + Sbjct: 123 ATSFDKQVNYQRALQGELERTIATINGVKFARVHLTLPKYTYYVRGEMAETRASVQL-VL 181 Query: 181 NPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQA 236 +P V S E I+ +L+ AV L +V V+D+ G+ L+ + N + S + Sbjct: 182 DPGVSLSKEQIKGIIYLLTGAVEGLKPENVKVVDNYGRALSDLVNFDDNTVAASTKVELK 241 Query: 237 IQHE--IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 +Q E + I AL G V+ ++ ++ Q+ + + + IR + Sbjct: 242 MQLESYYKKKIQPALETVFGFGTVE--VIPDVKLNWQKAEKTITTYSTPKGGLIRSQETE 299 Query: 295 QRSETSQPESA--VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEIN--TKSIATTHD 350 T+ P V E N+P + + S+ +K + +NYE+N ++I ++ Sbjct: 300 SEKSTTAPADGGPVGTESNIPTTYYQSIE-GSSVTLYEKNHQITNYELNQIVENIVQNNE 358 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVS 393 ++E +S++V+++ + V + + + EINK+VS Sbjct: 359 G-EIENISLSVIIDSS--STVFNKISKE--------EINKMVS 390 >gi|325273535|ref|ZP_08139767.1| flagellar MS-ring protein [Pseudomonas sp. TJI-51] gi|324101328|gb|EGB98942.1| flagellar MS-ring protein [Pseudomonas sp. TJI-51] Length = 424 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 108/454 (23%), Positives = 189/454 (41%), Gaps = 91/454 (20%) Query: 152 ARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGD 206 ARVH+ +P F + +P+ASV++ RA+ P AI +LVA +VP LD Sbjct: 1 ARVHLAIPKSSVFVRDERKPSASVLVELYPGRALEPG---QVMAIVNLVATSVPELDKSQ 57 Query: 207 VTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVA 264 VTV+D G LL+ + + GK + ++ + ++ L LG D +++ V A Sbjct: 58 VTVVDQKGNLLSEQIQDSALTQAGKQFDYSRRVESMLTQRVHNILQPVLGNDRYKAEVSA 117 Query: 265 ELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET-----------SQPESAVTVEQ--- 310 +L+ + ++PD RS + S D QR+ + +QP A T Q Sbjct: 118 DLDFSAVESTSEQFNPDQPALRSEQ-SVDEQRASSQGPQGVPGALSNQPPGAATAPQTTG 176 Query: 311 ------------------NMPHVSDRKVPLPRSLENTDKKEEQS--NYEINTKSIATTHD 350 N + D P K +QS N+E++ T Sbjct: 177 GAATPAAAIQPGQPLVDANGQQIMDPATGQPMLAPYPSDKRQQSTKNFELDRSISHTRQQ 236 Query: 351 NYKLERLSIAVVVN-KGRLTEVLGRS--ADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 ++ RLS+AVVV+ + ++ G + A G D LA ++V A G ++ RGD++T Sbjct: 237 QGRMTRLSVAVVVDDQVKIDPATGDATRAPWGSED--LARFTRLVQDAVGFDASRGDSVT 294 Query: 408 ITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 + ++ F ++ + Q F DI+ + V+ LV + G L L Sbjct: 295 VINVPFAADRGEEIADIAFYQQPWFWDIV-KQVLGVVFILVLVFGVLRPV---------L 344 Query: 464 HNIDDAKKG-------EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF-SHSRNL 515 +NI K E+GG L G + ND ++L + S S Sbjct: 345 NNITGGGKQAAPDSDMELGGMMGLD----------GELANDRVSLGGPTSILLPSPSEGY 394 Query: 516 QSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549 ++++N+ + ++ + R A+++++W Sbjct: 395 EAQLNA---------IKGLVAEDPGRVAQVVKEW 419 >gi|311068142|ref|YP_003973065.1| flagellar MS-ring protein [Bacillus atrophaeus 1942] gi|310868659|gb|ADP32134.1| flagellar MS-ring protein [Bacillus atrophaeus 1942] Length = 530 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 83/329 (25%), Positives = 144/329 (43%), Gaps = 22/329 (6%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110 LY L + +I L + +SD G+ I VP V ++ LAA+GLP + S Sbjct: 48 LYKDLSAEEAGQIKEELDAKKVPSELSDGGTVIKVPEEQVDTLKVQLAAEGLPKTGS-ID 106 Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170 Y F + FGLT ++ +V A + E++ I + GI ++V I +P F Sbjct: 107 YSFFGQNAGFGLTDNEFDMLKVEATQTELSNLINEMKGIKNSKVMINLPKDAVFVGEEQS 166 Query: 171 PTASVMIRAINPSV---YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL 227 ++ ++ +NP + HLV+ +VPNL ++ ++D + + Sbjct: 167 TASASIVLQMNPGYTLDQSQVNGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSNGDAGSY 226 Query: 228 GKSLSIVQAIQHEIEMNINK----ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-DS 282 S S Q I+ ++E +I K L +G D +V +++ + E + +P D Sbjct: 227 ADSYSSQQGIKTQVEKDIQKHVQTLLGTMMGQDKVVVSVTTDIDFTKENRTEDLVEPVDK 286 Query: 283 KVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVP-LPRSLENT-----DKKEEQS 336 + I +S + + +ET Q ++A D ++ EN+ DK + Sbjct: 287 ENMEGIAVSAE-KVAETYQGDNAAN--GGTAGTGDEDTTGYAQTDENSENGNYDKSSNKI 343 Query: 337 NYEINT--KSIATTHDNYKLERLSIAVVV 363 NYE+N K IA + YK+ L I V+V Sbjct: 344 NYEVNRIHKEIAESP--YKVRDLGIQVMV 370 >gi|160902819|ref|YP_001568400.1| flagellar M-ring protein FliF [Petrotoga mobilis SJ95] gi|160360463|gb|ABX32077.1| flagellar M-ring protein FliF [Petrotoga mobilis SJ95] Length = 516 Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 72/266 (27%), Positives = 139/266 (52%), Gaps = 19/266 (7%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 + R I+ + +V +++F + ++ +Y+ L+ ++ I L E I++++ D Sbjct: 19 KKRNYIVLLITVVALIVFFS--ILLSRKNYEFFIGGLDQANAGNIVTKLEEMGIEYKVDD 76 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSN-SGYELFDKVNSFGLTSFMQEITRVRALEG 137 G+ I V + V + R+ LA++G S N GYEL FG TS+ +++ ALEG Sbjct: 77 FGN-IYVANQNVSELRMKLASEG--SLGYNLQGYELLQN-QGFGATSYDKQVNYQIALEG 132 Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIG--ARPTASVMIRAINPSVYKSAEAIR--- 192 E++R+I S+ + +ARVH+V+P ++ ++G +P+ASV++ +NP ++ I+ Sbjct: 133 ELSRSIASMDSVQSARVHLVIPPR-TYYQVGESPKPSASVLL-VLNPGASVTSSQIKGII 190 Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS---LSIVQAIQHEIEMNINKAL 249 +LVA AV L ++ V+D+ L+A +G + + I+ + + L Sbjct: 191 NLVAGAVAGLQPENIKVVDNFSNDLSAQIALGEDIGSADTKFKLKAEIERYYKEKVESGL 250 Query: 250 AAFLGVDNFRSAVVAELNMDTQQIRE 275 + G+ N VV E+ ++ Q+I E Sbjct: 251 QSVFGLGNV--VVVPEIELNWQKIEE 274 >gi|289678989|ref|ZP_06499879.1| flagellar MS-ring protein [Pseudomonas syringae pv. syringae FF5] Length = 178 Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 44/127 (34%), Positives = 69/127 (54%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92 + + A + P Y LY L D +I L+ ANI++ + N ++ V S V + Sbjct: 49 VAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTLTAANINYTVEPNSGALLVKSDDVQR 108 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 ARI LA G+ + +N G+E+ DK G + FM+ R LEGE+ARTI +++ + A Sbjct: 109 ARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFMEATRYRRGLEGELARTISALNNVKGA 168 Query: 153 RVHIVMP 159 RVH+ +P Sbjct: 169 RVHLAIP 175 >gi|113969625|ref|YP_733418.1| flagellar MS-ring protein [Shewanella sp. MR-4] gi|114046855|ref|YP_737405.1| flagellar MS-ring protein [Shewanella sp. MR-7] gi|113884309|gb|ABI38361.1| flagellar M-ring protein FliF [Shewanella sp. MR-4] gi|113888297|gb|ABI42348.1| flagellar M-ring protein FliF [Shewanella sp. MR-7] Length = 561 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 98/425 (23%), Positives = 196/425 (46%), Gaps = 23/425 (5%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y L K+E ++ ++ L + I ++I + + VP + ++ L+ Sbjct: 53 IWAQEPEYRPLG-KMETQEMVQVLDVLDKNKIKYQI--DVDVVKVPEDKYQEVKMMLSRA 109 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 G+ S++++S + + + FG++ M++ + E +AR I+ + + A+V + +P Sbjct: 110 GIDSAAASS-KDFLTQDSGFGVSQRMEQARLKHSQEENLARAIEQLQSVSRAKVILALPK 168 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + A+P+A+V+I + + +AI +VA+AV L+ VTV DS G+LL + Sbjct: 169 ENVFARNTAQPSATVVINTRRGGLGQGEVDAIVDIVASAVQGLEPSRVTVTDSNGRLLNS 228 Query: 220 NEME--RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 + + L +VQ + E I+ L+ LG DNF S V +++MD + + Sbjct: 229 GSQDGVSARARRELELVQQKEAEYRTKIDSILSPILGPDNFTSQV--DVSMDFTAVEQTA 286 Query: 278 --YDPDSKVERS-IRLSKDAQRSETSQPESAVT----VEQNMPHVSDRKVPLPRSLENTD 330 ++PD RS + + ++ T A++ +E N+P +D+ Sbjct: 287 KRFNPDLPSLRSEMTVENNSTGGSTGGIPGALSNQPPMESNIPQEADKAT--ESVTAGNS 344 Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVV---VNKGRLTEVLGRSADQGKIDSYLAE 387 +E N+E++T +I+ T + R V G E G+ A + + L Sbjct: 345 HREATRNFELDT-TISHTRQQIGVVRRVSVSVAVDFKPGAAGEN-GQVARVARTEQELTN 402 Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447 I +++ A G +++RGD + + ++ F++ + + ++ R + ALV LV Sbjct: 403 IRRLLEGAVGFSAQRGDVLEVVTVPFMDQLVEDVPAPELWEQPWFWRAVKLGVGALVILV 462 Query: 448 GTLLV 452 L V Sbjct: 463 LILAV 467 >gi|145298346|ref|YP_001141187.1| flagellar MS-ring protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142851118|gb|ABO89439.1| flagellar M-ring protein FliF [Aeromonas salmonicida subsp. salmonicida A449] Length = 569 Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 98/425 (23%), Positives = 188/425 (44%), Gaps = 25/425 (5%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 F S T + R LIL I + I +F+ + P L ++ + L Sbjct: 31 FLSNTDVLRQITLILGLAICLAIAVFIL--LWGKEPDMRPLGT-YSTQELVKTLDYLDAQ 87 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS--SNSGYELFDKVNSFGLTSFMQE 128 I + + +G S+ V + R+ L GL +++ SN G + K +SFG++ M E Sbjct: 88 KIPYEV--DGKSVLVSAEKYADIRLRLTRAGLATNTDASNDGESILLKDSSFGVSQRM-E 144 Query: 129 ITRVR-ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187 R++ + E ++A I+ + A+V + +P F + +P+A+V++ ++ + Sbjct: 145 TERLKLSRERQLASAIEQFQNVAKAQVLLAIPKDNVFARNERKPSATVVLSLKGNALGQG 204 Query: 188 -AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMN 244 ++I +VA+AV L+ VTV D G+LL + + K ++ Q + E + Sbjct: 205 EVDSIVDMVASAVHGLEPTRVTVTDQNGRLLNSGSQDPVSAQTRKEFAMQQKQEVEYKQK 264 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS-IRLSKDAQRSE----- 298 I+ L LG DN+ + V L+ Q+ Y+PD RS + L +++ Sbjct: 265 IDAILIPVLGADNYTAEVDLSLDFSQQEQTRKTYNPDLPAVRSEMTLEENSASGSNGGVP 324 Query: 299 ---TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 T+QP +A N+P + S +KE N+E++T + Sbjct: 325 GALTNQPPAA----SNIPEEAAGGDGGAASSSGRSRKEATRNFELDTTVSHIRRQMGGIR 380 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 R++++V V+ + G + + + L + +++S G + RGDT+ + ++ F Sbjct: 381 RMTVSVAVDYKSIAGADGAVTREARSQAELDTLRRLLSGGLGFDVTRGDTLEVVAIPFNR 440 Query: 416 NQLFN 420 +L N Sbjct: 441 PELEN 445 >gi|289805827|ref|ZP_06536456.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 410 Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 95/339 (28%), Positives = 152/339 (44%), Gaps = 53/339 (15%) Query: 151 AARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMG 205 +ARVH+ MP F + P+ASV + RA++ A+ HLV++AV L G Sbjct: 2 SARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALD---EGQISAVVHLVSSAVAGLPPG 58 Query: 206 DVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVA 264 +VT++D +G LLT +N R++ L ++ I+ I L+ +G N + V A Sbjct: 59 NVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTA 118 Query: 265 ELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAV 306 +L+ ++ E Y P+ ++ S+ SE ++QP E+ + Sbjct: 119 QLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPI 178 Query: 307 TVE-------QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 QN P S NT ++ E SNYE++ T + +ERLS+ Sbjct: 179 ATPPTNQQNAQNTPQTSTSTNSNNAGPRNT-QRNETSNYEVDRTIRHTKMNVGDIERLSV 237 Query: 360 AVVVNKGRLTE--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 AVVVN L + L +ADQ K +I + A G + +RGDT+ + + F + Sbjct: 238 AVVVNYKTLADGKPLPLTADQMK------QIEDLTREAMGFSDKRGDTLNVVNSPF--SA 289 Query: 418 LFNSG-----TVQVSFMDILSRHFATVINALVFLVGTLL 451 + N+G Q SF+D L A LV +V +L Sbjct: 290 VDNTGGELPFWQQQSFIDQL---LAAGRWLLVLVVAWIL 325 >gi|260767706|ref|ZP_05876641.1| flagellar M-ring protein FliF [Vibrio furnissii CIP 102972] gi|260617215|gb|EEX42399.1| flagellar M-ring protein FliF [Vibrio furnissii CIP 102972] gi|315179462|gb|ADT86376.1| flagellar M-ring protein FliF [Vibrio furnissii NCTC 11218] Length = 580 Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 102/434 (23%), Positives = 195/434 (44%), Gaps = 42/434 (9%) Query: 8 LQFFKSGTSLGRTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 L F L R +L+L+ I V +MLF F+V P L E ++ + Sbjct: 43 LDFAMGDLDLLRQIVLVLSISICVALIVMLF----FWVKEPEMRPLGA-YETEELIPVLD 97 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L + +++ +G++I VP+S ++++ GL + S +G ++ + FG++ Sbjct: 98 YLDQQKQTYKL--DGNTILVPNSDYNSIKLNMVRAGL-NQSRQAGDDILLQDMGFGVSQR 154 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 +++ + E ++ + I+ + + ARV + +P F + +ASV + S Sbjct: 155 LEQERLKLSRERQLGKAIEEMRQVNKARVLLALPKQSVFVRHNQEASASVFLTLRTGSNL 214 Query: 186 KSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEM 243 K E +I +VA+AVP + VTV D G+LL++ ++ + + Q ++ + E Sbjct: 215 KQEEVDSIVDMVASAVPGMTPTRVTVTDQHGRLLSSGS--QDPVSAARRKEQELERKQEQ 272 Query: 244 N----INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE- 298 N I+ L LG+ N+ + V EL+ + +DP++ RS +D Sbjct: 273 NLRDKIDSVLIPILGLGNYTAQVDIELDFSAIEQTRKRFDPNTPATRSEYTLEDYNNGNV 332 Query: 299 --------TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 ++QP + ++ Q++ + D V S+ KE N+E++T Sbjct: 333 VAGVPGALSNQPPADASIPQDVAQMKDGSVMGQGSVH----KEATRNFELDTTISHERKQ 388 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKI------DSYLAEINKIVSAATGINSRRGD 404 + R ++AV V K R + +AD G++ +S L I +++ G N RGD Sbjct: 389 TGVINRQTVAVAV-KNRSS----VNADTGEVTYTPLSESELNSIRQVLIGTVGYNENRGD 443 Query: 405 TITITSMDFLENQL 418 + + SM F E ++ Sbjct: 444 LLNVLSMQFAEPEM 457 >gi|257140593|ref|ZP_05588855.1| flagellar MS-ring protein [Burkholderia thailandensis E264] Length = 377 Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 65/241 (26%), Positives = 109/241 (45%), Gaps = 23/241 (9%) Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKAL 249 AI LV+++VP++ +VT++D G LLT + L VQ I+ + I+ L Sbjct: 9 AITRLVSSSVPDMPAKNVTIVDQDGNLLTQTASATGLDASQLKYVQQIERNTQKRIDAIL 68 Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS-IRLSKDAQRSE---------- 298 A G N RS V A+++ + Y P+ ++S IR + + +E Sbjct: 69 APIFGAGNARSQVSADVDFSKIEQTSESYAPNGTPQQSAIRSQQTSTSTELAQSGTSGVP 128 Query: 299 ------TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 QP SA V N + P+ +D+K+ +NYE++ Sbjct: 129 GALSNTPPQPASAPIVASNGQPAAPAATPV------SDRKDSTTNYELDKTVRHVEQSMG 182 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 ++RLS+AVVVN T+ GR Q LA++ ++V A G + +RGD++ + + Sbjct: 183 TIKRLSVAVVVNYQPSTDAKGRVTMQPLTADKLAQVQQLVKDAMGYDEKRGDSVNVVNSA 242 Query: 413 F 413 F Sbjct: 243 F 243 >gi|89098644|ref|ZP_01171526.1| flagellar M-ring protein [Bacillus sp. NRRL B-14911] gi|89086606|gb|EAR65725.1| flagellar M-ring protein [Bacillus sp. NRRL B-14911] Length = 528 Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 62/241 (25%), Positives = 113/241 (46%), Gaps = 28/241 (11%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110 LY L S+ I +L I I+D GS+I VP +V ++ LAA+G+P S S Sbjct: 53 LYSNLSPSETGAIKESLDGRGIASEIADGGSTIMVPEEVVDTLKVELAAEGIPKSGSID- 111 Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170 Y F + G+T + ++ A++ E++ I+ I G+ A+V I +P+ G F Sbjct: 112 YSFFSQNAGIGMTENEFNVLKLDAMQTELSNLIKGIEGVNDAKVMINLPEKGIFINDQTE 171 Query: 171 PTASVMIRAINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVL-------------DSTG 214 ++ ++ P E I+ HL++ +VPNL ++ V D++G Sbjct: 172 EASASIVLNTKPGYQFETEQIKSLYHLISKSVPNLPTDNIVVTNQFFEYFDLENSNDTSG 231 Query: 215 KLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 K +TA L + + I+ +++ + L+ +G + +V A+++ TQ+ R Sbjct: 232 KTITAQ----------LDVKKQIERDVQRQVQSMLSTLMGPEKVVVSVSADIDF-TQENR 280 Query: 275 E 275 E Sbjct: 281 E 281 >gi|149908457|ref|ZP_01897120.1| flagellar biosynthesis; basal-body MS(membrane andsupramembrane)-ring and collar protein [Moritella sp. PE36] gi|149808620|gb|EDM68555.1| flagellar biosynthesis; basal-body MS(membrane andsupramembrane)-ring and collar protein [Moritella sp. PE36] Length = 569 Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 98/426 (23%), Positives = 192/426 (45%), Gaps = 43/426 (10%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 FF + L R ILILA I + +++F+ + P L + + L + Sbjct: 35 FFTNADIL-RQIILILALAISLTLVVFIL--LWGKEPEMRPLGTYPTAELIETLDF-LDQ 90 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 ID+ I NG ++SV + ++ L GL +++ G ++ + FG++ Q + Sbjct: 91 EKIDYTI--NGDTVSVSAEQYQNIKLRLRRSGL-TTTELQGDDILMQDMGFGVS---QRV 144 Query: 130 TRVR---ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY- 185 R R E +IAR ++ + A+V + +P F K +P+A+V++ N + Sbjct: 145 ERERLKLGRERQIARALEEFKQVSKAQVLLAIPKENVFAKRNKKPSATVVLTVRNSAALS 204 Query: 186 -KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG----KSLSIVQAIQHE 240 ++ +++ LVA+AV L+ VT+ D G+LL N +++L + +V+ + E Sbjct: 205 QENIDSMVQLVASAVQGLEPTRVTLTDQNGRLL--NSGSQDMLAAKGRREFEMVKNHERE 262 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL---------S 291 I+ L LGV N+ + V ++ + + ++PD RS L + Sbjct: 263 YRTKIDSILMPILGVSNYTAEVDVSMDFSVTEQTQKRFNPDLPAVRSEMLLERQSFGNGN 322 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDR----KVPLPRSLENTDKKEEQSNYEINTKSIAT 347 + + T+QP ++ ++P +D P+ +S +KE NYE++T T Sbjct: 323 QGIPGALTNQP----PLDADIPEEADAGNAAAGPIGQS-----QKESTRNYELDTTISHT 373 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 ++RLS++V ++ G + + + +A I +++ G N RGD + Sbjct: 374 KSQTGVIQRLSVSVAIDYINSVGADGALVREPRSQAEIANIRRVLQGGIGFNVNRGDNLE 433 Query: 408 ITSMDF 413 + ++ F Sbjct: 434 VVAIPF 439 >gi|148976413|ref|ZP_01813119.1| flagellar M-ring protein [Vibrionales bacterium SWAT-3] gi|145964236|gb|EDK29492.1| flagellar M-ring protein [Vibrionales bacterium SWAT-3] Length = 580 Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 90/417 (21%), Positives = 185/417 (44%), Gaps = 40/417 (9%) Query: 19 RTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76 R +L+L+ I V +MLF F+V P L E ++ + L + I++ + Sbjct: 54 RQVVLVLSISICVALIVMLF----FWVKEPEMRPLGA-YETEELIPVLDYLDQQKIEYSL 108 Query: 77 SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136 G++ISVP+S ++++ GL + N+G ++ + FG++ +++ + E Sbjct: 109 E--GNTISVPASEYNSLKLNMVRAGL-NQERNAGDDILMQDMGFGVSQRLEQERLKLSRE 165 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHL 194 ++A+ I+ + + A+V + +P F + +ASV + + K E ++ + Sbjct: 166 RQLAKAIEQMKQVRKAQVLLALPKQSVFVRHNQEASASVFLTLKTGTNLKQQEVDSVVDM 225 Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN--------IN 246 VA+AVP + +TV D G+LL++ + +S + +HE+E N I+ Sbjct: 226 VASAVPGMKTSRITVTDQHGRLLSSGSQD------PMSAARRKEHELERNQEQALREKID 279 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET------- 299 L LG N+ + V +L+ + +DP++ RS +D T Sbjct: 280 SILIPILGFGNYTAQVDIQLDFSAVEQTRKRFDPNTPATRSEYTLEDYNNGNTVAGIPGA 339 Query: 300 --SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 +QP S ++ Q++ + D + + + + KE N+E++T + R Sbjct: 340 LSNQPPSDASIPQDVAQMKDGAM----TGQGSVHKEATRNFELDTTISHERKQTGTVNRQ 395 Query: 358 SIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 +++V + ++ + G S + I +++ G + RGD + + SM F Sbjct: 396 TVSVAIKDRQSINPDTGEVVHTPIPASEINAIRQVLIGTVGFDESRGDLLNVLSMQF 452 >gi|157364749|ref|YP_001471516.1| flagellar M-ring protein FliF [Thermotoga lettingae TMO] gi|157315353|gb|ABV34452.1| flagellar M-ring protein FliF [Thermotoga lettingae TMO] Length = 536 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 108/485 (22%), Positives = 228/485 (47%), Gaps = 42/485 (8%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 I + L F++ L R ++ + + + I++ + FV +P Y L L Sbjct: 7 IQEYLKGFYEKWKGLPRGNKILFSGIAVSIIIVGILTIIFVAAPRYTLLVSGLTDEQSGY 66 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + L +++++ + G + V + R+ LA+ G+ +++ G+E+ D+ SFG Sbjct: 67 LIQQLETMGVEYKV-EPGRVLVSDKYNVYELRMRLASMGVLGATTK-GFEILDQ-QSFGA 123 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAIN 181 TSF +++ AL+GE+ R+I +ISG+ +ARVH+ +P + R A P ASV++ + Sbjct: 124 TSFDKQVRYQVALQGELERSIMTISGVRSARVHLTLPKYTYYVRGEMAEPKASVLV-VLQ 182 Query: 182 PSVYKSAEAIR----HLVAAAVPNLDMGDVTVLDSTGKLL----TANEMERNILGKSLSI 233 P S I+ LVA AV + + +V V+D ++L TA++ + + + Sbjct: 183 PGQDLSQNQIKGIMVELVAGAVEGMKLENVKVIDQMSRVLSDKVTASQ-DMLLASNRAEL 241 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI-REIV-YDPDSKVERSIRLS 291 +++ + I + L + G R V+ ++ ++ +++ R++ Y+P ++ +R Sbjct: 242 KMSLESYYQKKIKQTLESVFGPS--RVEVIPDIKLNWERVERQLTKYEPATRQGGIVRSQ 299 Query: 292 KDAQRSETSQPES--AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQS----NYEINT--K 343 + + P + AV + N+P P + E+S NYE+NT + Sbjct: 300 EQESEKSANLPATGGAVGTDSNIPPT------YPTTTSQGTSTYERSHTITNYELNTVVE 353 Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403 ++ + +++ LS++V+++ + + ++ D+ + + + ++ +V G NS Sbjct: 354 NVVQNKEG-EIDTLSLSVIIDA---SSSVFQNFDEAERERWANIVSDLVEKGIGANS--S 407 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDI-LSRHFATVIN--ALVFLVGTLLVTFLGLHAL 460 D S+ FL Q S +I R F ++ +L+F +G +L +L + Sbjct: 408 DPNLAVSVAFLPFDRTFEEEYQKSLSEIERKRRFTMMVTGVSLLFALGFMLF-YLMIIQF 466 Query: 461 RRLHN 465 RR+ + Sbjct: 467 RRIRS 471 >gi|299534787|ref|ZP_07048117.1| flagellar MS-ring protein [Lysinibacillus fusiformis ZC1] gi|298729875|gb|EFI70420.1| flagellar MS-ring protein [Lysinibacillus fusiformis ZC1] Length = 531 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 67/282 (23%), Positives = 132/282 (46%), Gaps = 17/282 (6%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 QF+ S + + +I+++ SV+ V I L FF + Y LY L ++ ++ AL Sbjct: 14 QFWTSRSK--KQKIVMIGSVVGV-IALAAIVTFFASKTTYVPLYKDLSTREIGQVKEALD 70 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 + ++I+ G+SI VP V + LA++G P + S Y F + FG+T Sbjct: 71 SQGVTYQIAPGGTSILVPEEQVDSLLVQLASEGYPQTGS-IDYS-FANSSGFGMTDNEFN 128 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINPSVYKS 187 + + A E EIA+ +++ G+ A+V I +P+ G F + TAS+++ +P YK Sbjct: 129 LLKKAATETEIAKLFKNLEGVKDAKVMITVPEEGVFVTDVQGEATASIVLNT-DPG-YKF 186 Query: 188 AE----AIRHLVAAAVPNLDMGDVTVLDSTGKLL-----TANEMERNILGKSLSIVQAIQ 238 E + +LV+ ++PNL ++ + + + TA+ L + + ++ Sbjct: 187 TEQQITTMYNLVSKSIPNLKTENIVISNQFSEYFDLNAATADGTSTTTAEGQLQMKKLVE 246 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP 280 +++ + L +G D +V +++ + E + P Sbjct: 247 RDLQRQVQNMLGTLMGQDKVMVSVTTDIDFKKENREENLVTP 288 >gi|91791422|ref|YP_561073.1| secretory protein YscJ/FliF [Shewanella denitrificans OS217] gi|91713424|gb|ABE53350.1| secretory protein YscJ/FliF [Shewanella denitrificans OS217] Length = 439 Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 99/413 (23%), Positives = 188/413 (45%), Gaps = 61/413 (14%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + ++FF +G SL ++L + ++V L+ L + + Sbjct: 4 MEKITKKMRFFIAGISL---------------MLLTLITLWWVIQDSKQVLFSGLSQATL 48 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 + L + I +++ G+SI V SS +AR+ +A + S++ +G+EL++ + Sbjct: 49 TEYTAKLEASGIGYQV--EGTSIFVASSDSNQARV-VAMEDSIQSNNVTGFELYEN-SDL 104 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 G T Q +RAL+GEI RT+ + I ARVH+ +P F ASV + + Sbjct: 105 GATERAQHANYLRALQGEIERTLTGFNYIKKARVHLTLPQKRLFMSQNQLTKASVTLFTV 164 Query: 181 NPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQ 238 + ++ EAI+ LV +AV +L + V V+D G+ E + ++ +L++ ++ + Sbjct: 165 DHYQPRTIDIEAIKQLVVSAVEDLTIDQVVVIDGAGQ-WGVFEPQGDLSSPNLALRRSTE 223 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR--LSKDAQR 296 +E + + L A+ + +AV ELN DT +I E ++I+ S+ Sbjct: 224 SYLEQKVLQVLVAYFSASSISAAVAVELNTDTVKIHET---------KAIKGDGSQGLIS 274 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 SET E+ H+SD P ++L N + Y + T ++ R Sbjct: 275 SETKFEET---------HLSDDNKPGSKTLRN------EVTYAHGALTQETEQAPGQILR 319 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 L+ AV +N E+ A+I++++ G +S+R D+I+++ Sbjct: 320 LTAAVSINAEVAPEL-------------QAQISELIKNTIGFDSQRDDSISVS 359 >gi|308068652|ref|YP_003870257.1| flagellar M-ring protein FliF [Paenibacillus polymyxa E681] gi|305857931|gb|ADM69719.1| flagellar M-ring protein FliF [Paenibacillus polymyxa E681] Length = 527 Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 91/364 (25%), Positives = 168/364 (46%), Gaps = 28/364 (7%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 + +IL+++++ + I + + F + Y+ + L +D + L A I ++++ Sbjct: 22 KQKILLVSTLAFIIIAVVVLTMQFTKT-EYEVAFRDLNANDAAGVIKYLDSAGIPYQLNA 80 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS-FGLTSFMQEITRVRALEG 137 G+ ISVP++ KA++ + +QGL S G FD+ +S G+T + AL G Sbjct: 81 GGTQISVPTANADKAKVDVGSQGLIQKGS-IGMSAFDQSSSAIGMTENEFNVKYNNALNG 139 Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-AINPSVYKSAEAIR---H 193 EI + ++ + G+ +++ I MP F + + AS I+ P + +AI + Sbjct: 140 EIQQLLERMDGVQSSKAVINMPKENIFAGLEEKDKASASIQMEFEPGFTPNQQAIDGYFN 199 Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEM----NINKAL 249 LV AVPNL + ++T+ + +L+ + + L + A+Q + E N+ + L Sbjct: 200 LVKTAVPNLPVENITITNKEYELIPTAKGGQGGLTSGVQENMALQKKFESDVRNNVQQFL 259 Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDP-DSKVERSIRLSKDAQRSETSQPES---- 304 + +G D V+++LN D +E + P D + I +S AQ+ + S S Sbjct: 260 SKIVGDDKVNVLVMSQLNFDKVTSKEQMVTPVDQTKMKGIEIS--AQQIQESYTGSSGQT 317 Query: 305 ---AVTVEQNMPHVSDRKVPLPRSLENT--DKKEEQSNYEINTKSIATTHDNYKLERLSI 359 A T Q++P P + NT DK NYE+N + Y ++ L+I Sbjct: 318 GGVAGTGTQDVPG-----YPGGANSGNTSSDKSSSTINYEVNRIARDIIQSPYTVKDLTI 372 Query: 360 AVVV 363 V V Sbjct: 373 NVAV 376 >gi|308048752|ref|YP_003912318.1| flagellar M-ring protein FliF [Ferrimonas balearica DSM 9799] gi|307630942|gb|ADN75244.1| flagellar M-ring protein FliF [Ferrimonas balearica DSM 9799] Length = 583 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 94/417 (22%), Positives = 180/417 (43%), Gaps = 44/417 (10%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LILA I + I +F+ + P Y L ++E ++ L + + +++ NG++ Sbjct: 57 LILALAISLAIAVFLI--IWAQEPSYRPLG-QMETQELIDTLDFLDQQKLPYQL--NGNT 111 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 ISVP R+ L GL + + D + FG++ M++ + E +A Sbjct: 112 ISVPEDRFADIRLMLTRNGLGPARPQQDFLTQD--SGFGVSQRMEQARLKHSQEQTLASA 169 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200 ++ + + ARV + +P F + P+A+V++ + + +E A+ +VA+AV Sbjct: 170 VEELRSVQRARVILALPQQNVFARQQREPSATVVVTLNRGTELRQSEVDAVVDIVASAVH 229 Query: 201 NLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKA----------LA 250 L VTV D G+LL + G I + E+E+ I + L Sbjct: 230 GLKPARVTVTDQHGRLLNS--------GSQDGISAQARRELELRIQQEQLYREKIDSILI 281 Query: 251 AFLGVDNFRSAVVAELNMDTQQIREIV--YDPDSKVERSIRLSKDAQRSE---------T 299 LG+ + + V ++ MD + E Y+PD RS L +D Q T Sbjct: 282 PVLGIGRYSAQV--DVTMDFSAVEETSRRYNPDMPAVRSEMLIEDNQSGSGPVGIPGALT 339 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 +QP A + Q + + R ++ E N+E+++ T + R+++ Sbjct: 340 NQPPIASEIPQQVEGAGQDE----RLASGRNRSEVTRNFELDSTISHTRQQVGTVRRVTL 395 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 +V V+ + G + ++ LA I +++ + G N+ RGD + + S+ F ++ Sbjct: 396 SVAVDHKPVAGADGATTMAPLSETELASIRRLLMGSVGFNAARGDVLEVVSVPFADD 452 >gi|288553065|ref|YP_003425000.1| flagellar MS-ring protein [Bacillus pseudofirmus OF4] gi|288544225|gb|ADC48108.1| flagellar MS-ring protein [Bacillus pseudofirmus OF4] Length = 524 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 79/339 (23%), Positives = 152/339 (44%), Gaps = 25/339 (7%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110 LY L + + +I L I ISDNG++I VP +MV ++ LAA+G+P S S Sbjct: 53 LYSNLTLQETGQIKETLDARGIPAEISDNGTTILVPEAMVDSLKVDLAAEGIPRSGSID- 111 Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170 Y F FG+T + ++ E+ I++I+G+ A V I +P+ + Sbjct: 112 YSFFQDQMGFGMTDNEFSVMERGLMQTELQDLIRNINGVNHANVMITLPEESVWLNTTQE 171 Query: 171 PTASVMIRAINPSV---YKSAEAIRHLVAAAVPNLDMGDVTVL---------DSTGK--- 215 + ++ + P +A+ HLV+ +VPNL + ++ ++ D+ G Sbjct: 172 AATASIVVDLAPGYQLDQNQVKALYHLVSKSVPNLPIENIVIMNQMFEDYFYDNDGNQST 231 Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 L+A E +R +I + I+ ++ +N+ + L +G D +V +++ + +E Sbjct: 232 TLSAFEQQR-------TIQREIERDLTLNLQRMLGTVVGQDKVLVSVTTDIDFTQENRQE 284 Query: 276 IVYDP-DSKVERSIRLS-KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKE 333 + +P D + I +S + + T + A VE + + + + ++ E Sbjct: 285 SLVEPVDPENIEGIAVSIERVTETYTGEGTPAGGVEGTGEGIPNFPGAVGQGESEYERTE 344 Query: 334 EQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372 ++ N E+N + YK+ L I V+V +VL Sbjct: 345 DRINNEVNRINRDIVESPYKIRDLGIQVMVEPPEGMDVL 383 >gi|261252322|ref|ZP_05944895.1| flagellar M-ring protein FliF [Vibrio orientalis CIP 102891] gi|260935713|gb|EEX91702.1| flagellar M-ring protein FliF [Vibrio orientalis CIP 102891] Length = 562 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 91/417 (21%), Positives = 186/417 (44%), Gaps = 40/417 (9%) Query: 19 RTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76 R +L+L+ I V +MLF F+V P L V E ++ + L + +D+++ Sbjct: 35 RQVVLVLSISICVALIVMLF----FWVKEPEMRPLGV-YETEELIPVLDYLDQQKLDYKL 89 Query: 77 SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136 G++I VP+S ++ + GL ++ +G ++ + FG++ +++ + E Sbjct: 90 E--GNTILVPTSDFNTLKLDMVRAGL-NNEKQAGDDILLQDMGFGVSQRLEQERLKLSRE 146 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHL 194 ++++ I+ + + ARV + +P F + +ASV + + K E ++ + Sbjct: 147 RQLSKAIEEMKQVRKARVLLALPKQSVFVRHNQEASASVFLTLKTGTNLKQEEVDSVVDM 206 Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN--------IN 246 V++AVP + +TV D G+LL++ + + S + +HE+E I+ Sbjct: 207 VSSAVPGMKPNRITVTDQHGRLLSSGTQD------AASSARRKEHELERKQEQALREKID 260 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE-------- 298 L LG N+ + V +L+ + +DP++ RS +D Sbjct: 261 SVLIPILGFGNYTAQVDIQLDFSAVEQTRKSFDPNTPSTRSEYTLEDYNNGSVVAGVPGA 320 Query: 299 -TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 ++QP + ++ Q++ + D + S+ KE N+E++T + R Sbjct: 321 LSNQPPADASIPQDVAQMKDGSLLGQGSVH----KEATRNFELDTTISHERRQTGVVNRQ 376 Query: 358 SIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 ++AV V N+ + G + Q D+ L I +++ G + RGD + + SM F Sbjct: 377 TVAVAVKNRAIVNPDTGETTYQPMSDAELNSIKQLLIGTVGFSEARGDLLNVLSMQF 433 >gi|225619610|ref|YP_002720867.1| flagellar MS-ring protein [Brachyspira hyodysenteriae WA1] gi|225214429|gb|ACN83163.1| flagellar MS-ring protein [Brachyspira hyodysenteriae WA1] Length = 542 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 100/416 (24%), Positives = 179/416 (43%), Gaps = 56/416 (13%) Query: 91 GKARIHLAAQG-LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149 KA + L +G +P+ G+ELFD G+T +I + R+L I + + + + Sbjct: 68 AKAELELVKEGRMPTGVD--GWELFD-APRIGITDVELDINKRRSLTKAITQLLTKLDFV 124 Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSAEAIR---HLVAAAVPNLDM 204 A V + P I + TASV+I+A V + + +R L+A V L Sbjct: 125 QEATVDLAFPKKEYLTDIDSPVTASVVIKAQPFKEEVLRDPKTVRGLQQLIAMGVDKLKP 184 Query: 205 GDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 VT+ DSTG +LT A ++ + + L IV + +IE I + L + Sbjct: 185 EFVTITDSTGYVLTDFTDEAANLKLKVAQEELKIVDRERKKIENKIRQTLGRIY-TNRVE 243 Query: 260 SAVVAELNMDTQQIRE-----IVYDPD------------SKVERSIRLSKDAQRSETSQP 302 + + EL D I I+ D +KV+ S R + + + P Sbjct: 244 TTIALELIWDDVSITNNLVLPIILKEDDPATPYDDSQFTNKVQVSTRTVTEDWKGQQFIP 303 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 + A E+N+P K ++ TD Q NYE++ + A +Y++ ++S AV Sbjct: 304 QGAAGAEENVPPGYKDKSDRWQTYTKTDS---QDNYELSKRYEAIKKGSYQIGKISAAVA 360 Query: 363 VNKGRLTEVLGRSADQGKID--SYLAE-----------INKIVSAATGINSRRGDTITIT 409 ++ GR T+ ++ D + SY+ E + +V AA G + +RGD +++T Sbjct: 361 LD-GRWTKSYDQNGDPIITNGTSYVREYHPVTAEEIRNVTSLVQAAIGYDLKRGDQVSVT 419 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465 + F FN+ + ++ F + L+ + +LL+ F+ A+R + Sbjct: 420 HIQFDHWDRFNAEDAK-----LMRDRF--IRKTLIITMISLLILFVLALAIRAIQK 468 >gi|88858108|ref|ZP_01132750.1| flagellar M-ring protein [Pseudoalteromonas tunicata D2] gi|88819725|gb|EAR29538.1| flagellar M-ring protein [Pseudoalteromonas tunicata D2] Length = 574 Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 96/426 (22%), Positives = 189/426 (44%), Gaps = 43/426 (10%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 G + R LI+A I V I +F+ + P L + ++ + L + Sbjct: 40 GGVDVLRQVTLIIALTICVAIAVFII--IWARQPDMRPLGT-MPTDELIQTLDFLDAQKV 96 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 D+++ G++I VP + ++ +A +GL + NSG ++ + FG++ ++ Sbjct: 97 DYKLE--GNTIYVPETGYQNIKLMMAREGL-DQAPNSGTDILMQDMGFGVSQRLERERLK 153 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--A 190 + E ++ARTI+ + +V A+V + +P F + P+A+V++ + E + Sbjct: 154 HSREQQLARTIEELQNVVRAKVLLALPKENVFARQEKSPSATVVLTLKRGRILNGEEVDS 213 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEM------- 243 I ++A+AV L+ VTV D G+LL + + SL+ ++E+E Sbjct: 214 IVDIIASAVQGLEPARVTVTDQNGRLLNSGSQD------SLAARSRKEYEVERKREQEYI 267 Query: 244 -NINKALAAFLGVDNFRSAVVAELNMDTQQIREIV--YDPDSKVERSIRLSKDAQRSETS 300 I+ + +G+ N+ + V +L MD + E Y+PD RS + R E + Sbjct: 268 EKIDSIMIPVVGLGNYTAQV--DLVMDFSSVEETQKRYNPDLPAVRS-----EMTREENN 320 Query: 301 QPESAVTVE---QNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHD 350 AV + N P V + +P S + ++KE NYE++T Sbjct: 321 IGGLAVGIPGALSNQPPV-NSAIPEKAGQGSASNSAPSRNQKEATRNYELDTTISHKRQQ 379 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSAD-QGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 + R+S++V +N G A + + L+ I +++ G + +RGD + + Sbjct: 380 TGVIRRISVSVAINYNSTAGADGAQATREPRSQQELSNIRRLLQGGIGFDMQRGDALEVV 439 Query: 410 SMDFLE 415 ++ F++ Sbjct: 440 TVPFVQ 445 >gi|300871679|ref|YP_003786552.1| flagellar M-ring protein FliF [Brachyspira pilosicoli 95/1000] gi|300689380|gb|ADK32051.1| flagellar M-ring FliF protein, FliF [Brachyspira pilosicoli 95/1000] Length = 562 Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 116/500 (23%), Positives = 206/500 (41%), Gaps = 68/500 (13%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVK-LEVSDVN 61 ++ Q+ F T + + IL V++V + +A FF + L+ L D Sbjct: 4 LIGQVKNIFAKTTKVQKA---ILIGVLVVALGAIVATVFFTSRRAGTLLFQNALTQEDAR 60 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG-LPSSSSNSGYELFDKVNSF 120 + L NI ++ NG + KA + L +G +P G+ELFD Sbjct: 61 NVIAVLDANNIKYQYR-NGFITLNNEADKAKAELELVKEGRMPMGVD--GWELFD-APRI 116 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA- 179 G+T +I + R+L I + + + + A V + P + + TASV+I+A Sbjct: 117 GITDAELDINKRRSLTKAITQLLTKLDFVQEATVDLAFPKKEYLTDVDSPVTASVVIKAQ 176 Query: 180 -INPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKS 230 + + + +R L+A V L VT+ DSTG +LT A ++ + + Sbjct: 177 PFKEEILRDPKTVRGLQQLIAMGVDKLKPEFVTITDSTGYVLTDFTDEAANLKLKVAQEE 236 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE-----IVYDPD---- 281 L IV + +IE I + L + + + EL D I I+ D Sbjct: 237 LKIVDRERKKIENKIRQTLGRIY-TNRVETTIALELIWDDISITNNLVLPIILKEDDPAT 295 Query: 282 --------SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKE 333 +KV+ S R + + + P+ A E+N+P K ++ TD Sbjct: 296 PYDDSQFTNKVQVSSRTVTEDWKGQQFIPQGAAGAEENVPPGYKDKTDRWQTYTKTD--- 352 Query: 334 EQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ--GKIDSYLAE---- 387 Q NYE++ + A +Y++ ++S AV ++ GR T+V + + SYL E Sbjct: 353 SQDNYELSKRYEAIKKGSYQIGKISAAVALD-GRWTKVYDANGNAIITNGSSYLREYHPV 411 Query: 388 -------INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440 + +V AA G + +RGD +++T + F FN+ ++ + + R Sbjct: 412 TADEIKNVTALVQAAIGYDLKRGDQVSVTHIQFDHWDRFNAEDAKLLRNNFIKR------ 465 Query: 441 NALVFLVGTLLVTFLGLHAL 460 L+++ +GL AL Sbjct: 466 --------VLIISMIGLLAL 477 >gi|310641543|ref|YP_003946301.1| flagellar m-ring protein flif [Paenibacillus polymyxa SC2] gi|309246493|gb|ADO56060.1| Flagellar M-ring protein FliF [Paenibacillus polymyxa SC2] Length = 527 Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 89/364 (24%), Positives = 168/364 (46%), Gaps = 28/364 (7%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 + +IL+++++ + I + + F + Y+ + L +D + L A I ++++ Sbjct: 22 KQKILLVSTLAFIIIAIVVLTMQFTKT-EYEVAFQDLNANDAAGVIKYLDSAGIPYQLNA 80 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS-FGLTSFMQEITRVRALEG 137 G+ ISVP++ KA++ + +QGL S G FD+ +S G+T + AL G Sbjct: 81 GGTQISVPTANADKAKVDVGSQGLIQKGS-IGMSAFDQSSSAIGMTENEFNVKYNNALNG 139 Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-AINPSVYKSAEAIR---H 193 E+ + ++ + G+ +++ I MP F + + AS ++ P + +AI + Sbjct: 140 EVQQLLERMDGVQSSKAVINMPKENIFAGLEEKDKASASVQMEFEPGFTPNQQAIDGYFN 199 Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEM----NINKAL 249 LV AVPNL + ++T+ + +L+ + + L + A+Q + E N+ + L Sbjct: 200 LVKTAVPNLPVENITITNKEYELIPTAKGGQGGLTSGVQENMALQKKFESDVRNNVQQFL 259 Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDP-DSKVERSIRLSKDAQRSETSQPES---- 304 + +G D V+++LN D +E + P D + I +S AQ+ + S S Sbjct: 260 SKIVGDDKVNVLVMSQLNFDKVTSKEQMVTPVDQTKMKGIEIS--AQQIQESYTGSSGQT 317 Query: 305 ---AVTVEQNMPHVSDRKVPLPRSLENT--DKKEEQSNYEINTKSIATTHDNYKLERLSI 359 A T Q++P P + NT DK NYE+N + Y ++ L+I Sbjct: 318 GGVAGTGTQDVPG-----YPGGANSGNTSSDKSSSTINYEVNRIARDIIQSPYTVKDLTI 372 Query: 360 AVVV 363 V V Sbjct: 373 NVAV 376 >gi|117620247|ref|YP_855904.1| flagellar MS-ring protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561654|gb|ABK38602.1| flagellar M-ring protein FliF [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 560 Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 93/419 (22%), Positives = 185/419 (44%), Gaps = 26/419 (6%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 F S T + R LIL I + I +F+ + P L V + L + Sbjct: 21 FLSNTDVLRQITLILGLAICLAIAVFIL--LWGKEPDMRPLGTYTTQELVKTLDY-LDQQ 77 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS--SNSGYELFDKVNSFGLTSFMQE 128 I +++ +G S+ V + R+ L GL +++ ++ G ++ K +SFG++ M+ Sbjct: 78 KIPYQV--DGKSVLVSAENYSSIRLALTRAGLANATDTTSDGEDILLKDSSFGVSQRMES 135 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS- 187 + E ++A I+ + A+V + +P F + +P+A+V++ ++ + Sbjct: 136 ERLKLSRERQLASAIEQFQNVAKAQVLLAIPKDNVFARNERKPSATVVLSLKGNALGQGE 195 Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNI 245 ++I +VA+AV L+ VTV D G+LL + + K ++ Q + E + I Sbjct: 196 VDSIVDMVASAVHGLEPTRVTVTDQNGRLLNSGSQDPVSAQTRKEFAMQQKQELEYKQKI 255 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS-IRLSKDAQRSE------ 298 + L LG DN+ + V L+ Q+ Y+PD RS + + +++ Sbjct: 256 DAILIPVLGADNYTAEVDLSLDFSQQEQTRKTYNPDLPAVRSEMTMEENSANGSNGGVPG 315 Query: 299 --TSQPESAVTVEQNM--PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 ++QP +A + Q P+ RS +KE N+E++T + Sbjct: 316 ALSNQPPAASNIPQQATGPNAETTASSSGRS-----RKEATRNFELDTTVSHIRRQMGGI 370 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 R++++V V+ T G+ + + L + +++S G + RGDT+ + ++ F Sbjct: 371 RRMTVSVAVDYKASTAADGKVTREPRTQPELDTLRRLLSGGLGFDVTRGDTLEVVAIPF 429 >gi|323490142|ref|ZP_08095362.1| flagellar MS-ring protein [Planococcus donghaensis MPA1U2] gi|323396190|gb|EGA89016.1| flagellar MS-ring protein [Planococcus donghaensis MPA1U2] Length = 546 Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 61/234 (26%), Positives = 112/234 (47%), Gaps = 10/234 (4%) Query: 20 TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN 79 T+ ++ S L I+L + FF N ++ LY L ++ I A+ I +S + Sbjct: 23 TKWSVIGSFFLTLIILGVFV-FFSNQSNFSVLYSDLTPAEAGEIKTAIEAQAIPVEVSSD 81 Query: 80 GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEI 139 G +ISVP + ++ LAA+G+P + N Y F + G+T ++ A++ E+ Sbjct: 82 GKTISVPEEHLANLKVSLAAEGIP-KNGNVNYGTFSENMGLGMTDRHFDVVERDAMQNEL 140 Query: 140 ARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAINPSVY--KSAEAIRHLVA 196 A I+ I G+ A V I +P + + TAS++++ + K + HL++ Sbjct: 141 AYLIKQIDGVTEANVMITLPKENIWITDEEQTSTASIVVKGDSTLQLDQKQINGLYHLIS 200 Query: 197 AAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ---AIQHEIEMNINK 247 +VP+L + ++D G++ + N L +LS+ Q IQ IE +I + Sbjct: 201 KSVPSLPADQIVIMDQNGQVFEV--QDENQLDTNLSVYQQHREIQKGIEQDIQR 252 >gi|24374740|ref|NP_718783.1| flagellar MS-ring protein [Shewanella oneidensis MR-1] gi|24349402|gb|AAN56227.1|AE015760_6 flagellar M-ring protein FliF [Shewanella oneidensis MR-1] Length = 553 Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 98/425 (23%), Positives = 195/425 (45%), Gaps = 22/425 (5%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y L K+E ++ ++ L + I ++I + + VP + ++ L+ Sbjct: 44 IWAQEPEYRPLG-KMETQEMVQVLDVLDKNKIKYQI--DVDVVKVPEDKYQEVKMMLSRA 100 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 G+ S++ S + + + FG++ M++ + E +AR I+ + + A+V + +P Sbjct: 101 GI-DSAATSKQDFLTQDSGFGVSQRMEQARLKHSQEENLARAIEQLQSVSRAKVILALPK 159 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + A+P+A+V+I + + +AI +VA+AV L+ VTV DS G+LL + Sbjct: 160 ENVFARNTAQPSATVVINTRRGGLGQGEVDAIVDIVASAVQGLEPSRVTVTDSNGRLLNS 219 Query: 220 NEME--RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 + + L +VQ + E I+ L+ LG DNF S V +++MD + + Sbjct: 220 GSQDGVSARARRELELVQQKETEYRTKIDSILSPILGHDNFTSQV--DVSMDFTAVEQTA 277 Query: 278 --YDPDSKVERS-IRLSKDAQRSETSQPESAVT----VEQNMPHVSDRKVPLPRSLENTD 330 ++PD RS + + ++ T A++ +E N+P + + N+ Sbjct: 278 KRFNPDLPSLRSEMTVENNSTGGSTGGIPGALSNQPPMESNIPQEAATAATESVAAGNS- 336 Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVV---VNKGRLTEVLGRSADQGKIDSYLAE 387 +E N+E++T +I+ T + R V G E G+ A + + L Sbjct: 337 HREATRNFELDT-TISHTRQQIGVVRRVSVSVAVDFKPGAAGEN-GQVARVARTEQELTN 394 Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447 I +++ A G +++RGD + + ++ F++ + + ++ R + ALV LV Sbjct: 395 IRRLLEGAVGFSAQRGDVLEVVTVPFMDQLVEDVPAPELWEQPWFWRAVKLGVGALVILV 454 Query: 448 GTLLV 452 L V Sbjct: 455 LILAV 459 >gi|296125414|ref|YP_003632666.1| flagellar M-ring protein FliF [Brachyspira murdochii DSM 12563] gi|296017230|gb|ADG70467.1| flagellar M-ring protein FliF [Brachyspira murdochii DSM 12563] Length = 567 Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 98/404 (24%), Positives = 174/404 (43%), Gaps = 50/404 (12%) Query: 91 GKARIHLAAQG-LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149 +A + L +G +P+ G+ELFD G+T +I + R+L I + + + + Sbjct: 93 ARAELELVKEGRMPTGVD--GWELFD-APRIGITDVELDINKRRSLTKAITQLLTKLDFV 149 Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSAEAIR---HLVAAAVPNLDM 204 A V + P I + TASV+I+A V + + +R L+A V L Sbjct: 150 QEATVDLAFPKKEYLTDIDSPVTASVVIKAQPFKEDVLRDPKTVRGLQQLIAMGVDKLKP 209 Query: 205 GDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 VT+ DSTG +LT A ++ + + L IV + IE I + L + Sbjct: 210 EFVTITDSTGYVLTDFTDEAANLKLKVAQEELKIVDRERKNIENKIRQTLGRIY-TNRVE 268 Query: 260 SAVVAELNMDTQQIRE-----IVYDPD------------SKVERSIRLSKDAQRSETSQP 302 + + EL D I I+ D +KV+ S R + + + P Sbjct: 269 TTIALELIWDDVSITNNLVLPIILKEDDPTTPYDDSQFTNKVQVSSRTVTEDWKGQQFIP 328 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 + A E+N+P K ++ TD Q NYE++ + A +Y++ ++S AV Sbjct: 329 QGAAGAEENVPPGYKDKSDRWQTYTKTD---SQDNYELSKRYEAIKKGSYQIGKISAAVA 385 Query: 363 VNKGRLTEVLGRSADQ--GKIDSYLAE-----------INKIVSAATGINSRRGDTITIT 409 ++ GR T+V + D +SY+ E + +V AA G + +RGD +++T Sbjct: 386 LD-GRWTKVYDVNGDPVITNGNSYVREYHPVTTEEIRNVTSLVQAAIGYDLKRGDQVSVT 444 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHF-ATVINALVFLVGTLLV 452 + F FN+ ++ + + T+I+ L+ V L++ Sbjct: 445 HIQFDHWDRFNAEDAKLMRDRFIKKTLIITMISLLILFVLALVI 488 >gi|27365280|ref|NP_760808.1| flagellar MS-ring protein [Vibrio vulnificus CMCP6] gi|320155664|ref|YP_004188043.1| flagellar M-ring protein FliF [Vibrio vulnificus MO6-24/O] gi|27361427|gb|AAO10335.1| flagellar M-ring protein FliF [Vibrio vulnificus CMCP6] gi|319930976|gb|ADV85840.1| flagellar M-ring protein FliF [Vibrio vulnificus MO6-24/O] Length = 581 Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 100/428 (23%), Positives = 194/428 (45%), Gaps = 58/428 (13%) Query: 19 RTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76 R +L+L+ I V +MLF F+V P L V E ++ + L + I++++ Sbjct: 55 RQVVLVLSISICVALIVMLF----FWVKEPEMRPLGV-FETEELIPVLDHLDQQKINYKL 109 Query: 77 SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136 +G++I V +S ++ + GL + S+ +G ++ + FG++ +++ + E Sbjct: 110 --DGNTILVETSEFNSIKLDMVRSGL-NQSTQAGDDILLQDMGFGVSQRLEQERLKLSRE 166 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHL 194 ++ + I+ + + A+V + +P F + +ASV + S K E +I + Sbjct: 167 RQLGKAIEEMKQVRKAKVLLALPKQSVFVRHNQEASASVFLTLNTGSNLKQQEVDSIVDM 226 Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN--------IN 246 VA+AVP + VTV D G+LL + + +S + + E+E N I+ Sbjct: 227 VASAVPGMKTSRVTVTDQHGRLLNSGSQD------PVSAARRKEQELERNQEQALREKID 280 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE-------- 298 L LG N+ + V E++ + +DP++ RS +D Sbjct: 281 SVLIPILGFGNYTAQVDIEMDFSAVEQTRKQFDPNTPATRSEYALEDYNNGNMVAGVPGA 340 Query: 299 -TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL--- 354 ++QP + ++ Q++ + D V S+ +KE N+E++T +H+ ++ Sbjct: 341 LSNQPPADASIPQDVAQMKDGSVLGQGSV----RKESTRNFELDT---TISHERKQMGVI 393 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYL----AEIN---KIVSAATGINSRRGDTIT 407 R ++AV + K R T + D G + +Y AEIN +++ G + RGD + Sbjct: 394 NRQTVAVAI-KDRAT----INPDTGDV-TYTPRSEAEINAIRQVLVGTVGFSENRGDLLN 447 Query: 408 ITSMDFLE 415 + SM F E Sbjct: 448 VLSMPFAE 455 >gi|194014358|ref|ZP_03052975.1| flagellar M-ring protein FliF [Bacillus pumilus ATCC 7061] gi|194013384|gb|EDW22949.1| flagellar M-ring protein FliF [Bacillus pumilus ATCC 7061] Length = 525 Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 66/292 (22%), Positives = 140/292 (47%), Gaps = 22/292 (7%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + ++F+++ + L +IL++ V + I++ + + F +S L+ L ++ Sbjct: 1 MQLRTKTVEFWRNRSKL--QKILMIGGVAALAIIITVVS-IFASSEKMVPLFRDLSEAEA 57 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +I L N+ +++NG++I VP ++ LA++GLP + N Y F + F Sbjct: 58 GQIKQELDGKNVKSELANNGTTILVPEKQADSLKVTLASEGLP-KTGNIDYSFFANNSGF 116 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG---ARPTASVMI 177 GLT ++ +V A + E++ I +I GI ++V I +P F +G + +AS+++ Sbjct: 117 GLTDNEFDVLKVDATQTELSNLINTIDGIKDSKVMINLPKDSVF--VGEEQSNASASIVL 174 Query: 178 R-----AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS 232 + + P K + HL++ +VPNL ++ ++D N + + Sbjct: 175 QVERGYTLAPQQVK---GLYHLISKSVPNLKTENIVIMDQDSNYYDLNS-SSDSYASGMD 230 Query: 233 IVQAIQHEIEMN----INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP 280 Q + EIE N I + L +G + +V +++ ++ +E + +P Sbjct: 231 AQQQKKEEIEKNLQRKIQQLLGTMMGQEKVAVSVTTDIDFTEEKRKEDLVEP 282 >gi|37680665|ref|NP_935274.1| flagellar MS-ring protein [Vibrio vulnificus YJ016] gi|37199414|dbj|BAC95245.1| polar flagellar M-ring protein FliF [Vibrio vulnificus YJ016] Length = 581 Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 100/428 (23%), Positives = 194/428 (45%), Gaps = 58/428 (13%) Query: 19 RTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76 R +L+L+ I V +MLF F+V P L V E ++ + L + I++++ Sbjct: 55 RQVVLVLSISICVALIVMLF----FWVKEPEMRPLGV-FETEELIPVLDHLDQQKINYKL 109 Query: 77 SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136 +G++I V +S ++ + GL + S+ +G ++ + FG++ +++ + E Sbjct: 110 --DGNTILVETSEFNSIKLDMVRSGL-NQSTQAGDDILLQDMGFGVSQRLEQERLKLSRE 166 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHL 194 ++ + I+ + + A+V + +P F + +ASV + S K E +I + Sbjct: 167 RQLGKAIEEMKQVRKAKVLLALPKQSVFVRHNQEASASVFLTLNTGSNLKQQEVDSIVDM 226 Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN--------IN 246 VA+AVP + VTV D G+LL + + +S + + E+E N I+ Sbjct: 227 VASAVPGMKTSRVTVTDQHGRLLNSGSQD------PVSAARRKEQELERNQEQALREKID 280 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE-------- 298 L LG N+ + V E++ + +DP++ RS +D Sbjct: 281 SVLIPILGFGNYTAQVDIEMDFSAVEQTRKQFDPNTPATRSEYALEDYNNGNMVAGVPGA 340 Query: 299 -TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL--- 354 ++QP + ++ Q++ + D V S+ +KE N+E++T +H+ ++ Sbjct: 341 LSNQPPADASIPQDVAQMKDGSVLGQGSV----RKESTRNFELDT---TISHERKQMGVI 393 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYL----AEIN---KIVSAATGINSRRGDTIT 407 R ++AV + K R T + D G + +Y AEIN +++ G + RGD + Sbjct: 394 NRQTVAVAI-KDRAT----INPDTGDV-TYTPRSEAEINAIRQVLVGTVGFSENRGDLLN 447 Query: 408 ITSMDFLE 415 + SM F E Sbjct: 448 VLSMPFAE 455 >gi|90406819|ref|ZP_01215011.1| flagellar M-ring protein [Psychromonas sp. CNPT3] gi|90312056|gb|EAS40149.1| flagellar M-ring protein [Psychromonas sp. CNPT3] Length = 571 Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 92/431 (21%), Positives = 195/431 (45%), Gaps = 46/431 (10%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHY--------DNLYVKLEVSD 59 L F S + R +I+ +I++ I++ + + + P Y D L L+ D Sbjct: 31 LATFFSNVDVLRQISMIIGLLIVLAIVVIIWS--WGKQPDYRPLGNYQTDELISTLDFLD 88 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 +I+ L G+S+ V + K ++ + GL +++SG ++ + Sbjct: 89 KEKITYQLE-----------GNSVLVEAEQYQKIKLLMTRAGLTQDTNDSGDDILLQDMG 137 Query: 120 FGLTSFMQEITRVR---ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 FG++ Q + R R + E +I+ I S+ I A+V + +P F + + +A+V+ Sbjct: 138 FGVS---QRVERERLKLSRERQISVAIMSMKNITKAQVLLAIPKQSVFARKERKASATVV 194 Query: 177 IRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS---L 231 I + E +I +VA++V L VTV D G+LL + + + +S Sbjct: 195 ITTSKSYTLSAQEIDSIVDIVASSVQGLSPNSVTVSDQRGRLLHSGSQD-GLSSRSSAEF 253 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 ++ + ++E + I+ L LG+ N+ S V ++ ++ + +++P K RS L Sbjct: 254 ALERGRENEYKSKIDAILIPILGLSNYTSEVDLAMDFTIKEETQKIFNPSKKSVRSEMLV 313 Query: 292 KDAQRSE---------TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINT 342 + + ++QP +A ++ + + D+K +S+ EE NYE++T Sbjct: 314 ETKSTNSILGNIPGALSNQPPAASSIPEELRKDGDKK----KSVIGNSHNEETRNYEMDT 369 Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402 + H ++RL+++V ++ T G + D+ + ++ +++ G++ R Sbjct: 370 TVVHIKHKVGTIDRLAVSVALDYVPTTNEAGEVTYAPRTDAEVEKLRRLLMGGLGLDIER 429 Query: 403 GDTITITSMDF 413 GD + + S+ F Sbjct: 430 GDILEMASVRF 440 >gi|157692300|ref|YP_001486762.1| flagellar MS-ring protein [Bacillus pumilus SAFR-032] gi|157681058|gb|ABV62202.1| flagellar basal-body M-ring protein [Bacillus pumilus SAFR-032] Length = 530 Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 67/292 (22%), Positives = 139/292 (47%), Gaps = 22/292 (7%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + ++F+++ + L +IL++ V + I++ + + F +S L+ L S+ Sbjct: 6 MQLRTKTVEFWRNRSKL--QKILMIGGVAALAIIITVVS-IFASSEKMVPLFKDLSESEA 62 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +I L I +++NG++I VP ++ LA+QGLP + Y F + F Sbjct: 63 GQIKQELDGKKIKSELANNGTTILVPEKQADSLKVTLASQGLPKTGK-IDYSFFANNSGF 121 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG---ARPTASVMI 177 GLT ++ +V A + E++ I +I GI ++V I +P F +G + +AS+++ Sbjct: 122 GLTDNEFDVLKVDATQTELSNLINTIDGIKDSKVMINLPKDSVF--VGEEQSNASASIVL 179 Query: 178 R-----AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS 232 + ++P K + HL++ +VPNL ++ ++D N + + Sbjct: 180 QVERGYTLSPQQVK---GLYHLISKSVPNLKTENIVIMDQDSNYYDLNS-SSDSYASGMD 235 Query: 233 IVQAIQHEIEMN----INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP 280 Q + EIE N I + L +G + +V +++ ++ +E + +P Sbjct: 236 AQQQKKEEIEKNLQRKIQQLLGTMMGQEKVAVSVTTDIDFTEEKRKEDLVEP 287 >gi|329896193|ref|ZP_08271387.1| Flagellar M-ring protein fliF [gamma proteobacterium IMCC3088] gi|328921936|gb|EGG29302.1| Flagellar M-ring protein fliF [gamma proteobacterium IMCC3088] Length = 640 Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 96/188 (51%), Gaps = 2/188 (1%) Query: 29 ILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSS 88 +L+ ++LF+ +NS Y ++ + D AL + RI+ I VP Sbjct: 73 VLLAVLLFVIFGSMLNSTGYRSISNGMSEPDRQASYDALLASQYKVRINPASGMIEVPDG 132 Query: 89 MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISG 148 +A++ LA+QGLP S+ GY ++ S + FM+++ A+E E+A+TI I Sbjct: 133 SYQQAKLFLASQGLPRSAIAGGYSALNENASMTQSQFMEQVQYNNAMELELAKTISQIDS 192 Query: 149 IVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGD 206 I +ARVHI + F + ASV+++ V ++I HLV+++VP + D Sbjct: 193 IESARVHIAVNKQSVFVRERMPSKASVVVKPYFGRVVTQPQVQSIIHLVSSSVPYMSTTD 252 Query: 207 VTVLDSTG 214 VTV+D+ G Sbjct: 253 VTVVDNYG 260 >gi|163801845|ref|ZP_02195742.1| flagellar M-ring protein [Vibrio sp. AND4] gi|159174353|gb|EDP59157.1| flagellar M-ring protein [Vibrio sp. AND4] Length = 580 Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 89/422 (21%), Positives = 195/422 (46%), Gaps = 40/422 (9%) Query: 19 RTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76 R +L+L+ I V +MLF F+V P L E ++ + L + I++++ Sbjct: 53 RQVVLVLSISICVALIVMLF----FWVKEPEMRPLGA-YETEELIPVLDYLDQQKINYKL 107 Query: 77 SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136 +GS++SV SS ++ + G+ + ++ +G ++ + FG++ +++ + E Sbjct: 108 --DGSTVSVESSDYNSIKLGMVRAGV-NQATAAGDDILLQDMGFGVSQRLEQERLKLSRE 164 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV---YKSAEAIRH 193 ++A+ I+ + + ARV + +P F + +ASV + I+ V + ++I Sbjct: 165 RQLAQAIEEMKQVRKARVLLALPKHSVFVRHNQEASASVSL-TISTGVNLKQQEVDSIVD 223 Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKALAA 251 +VA+AVP + +TV D G+LL++ + K + ++ + + I+ L Sbjct: 224 MVASAVPGMKTSRITVTDQHGRLLSSGSQDPASAARRKEQELERSQEQGLREKIDSVLLP 283 Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------TSQP 302 LG N+ + V +++ T + +DP++ RS +D ++QP Sbjct: 284 ILGFGNYTAQVDIQMDFSTVEQTRKNFDPNTPSTRSEYALEDYNNGNMVAGIPGALSNQP 343 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 + ++ Q++ + D + + + + +KE N+E++T L R +++V Sbjct: 344 PADASIPQDVAQMKDGTL----TGQGSVRKESTRNFELDTTISHERKQTGTLARQTVSVA 399 Query: 363 VNKGRLTEVLGRSADQGKI------DSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 + R+ + D G++ +S + I +++ A G + RGD + + S+ F E Sbjct: 400 IKDRRVV-----NPDTGEVTYTPLSESEINAIRQVLIGAVGFDESRGDLLNVLSVKFAEP 454 Query: 417 QL 418 +L Sbjct: 455 EL 456 >gi|84388111|ref|ZP_00991007.1| flagellar M-ring protein [Vibrio splendidus 12B01] gi|84377178|gb|EAP94048.1| flagellar M-ring protein [Vibrio splendidus 12B01] Length = 580 Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 90/417 (21%), Positives = 184/417 (44%), Gaps = 40/417 (9%) Query: 19 RTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76 R +L+L+ I V +MLF F+V P L E ++ + L I++ + Sbjct: 54 RQVVLVLSISICVALIVMLF----FWVKEPEMRPLGA-YETEELIPVLDYLDLQKIEYTL 108 Query: 77 SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136 G++ISVP+S ++++ GL + N+G ++ + FG++ +++ + E Sbjct: 109 E--GNTISVPASEYNSLKLNMVRAGL-NQERNAGDDILMQDMGFGVSQRVEQERLKLSRE 165 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHL 194 ++A+ I+ + + A+V + +P F + +ASV + + K E ++ + Sbjct: 166 RQLAKAIEQMKQVRKAQVLLALPKQSVFVRHNQEASASVFLTLKTGTNLKQQEVDSVVDM 225 Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN--------IN 246 VA+AVP + +TV D G+LL + + +S + +HE+E N I+ Sbjct: 226 VASAVPGMKTSRITVTDQHGRLLNSGSQD------PMSAARRKEHELERNQEQALREKID 279 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET------- 299 L LG N+ + V +L+ + +DP++ RS +D T Sbjct: 280 SILIPILGFGNYTAQVDIQLDFSAVEQTRKRFDPNTPATRSEYTLEDYNNGNTVAGIPGA 339 Query: 300 --SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 +QP + ++ Q++ + D + + + + KE N+E++T + + R Sbjct: 340 LSNQPPADASIPQDVAQMKDGSM----TGQGSVHKEATRNFELDTTISHERKQSGTVNRQ 395 Query: 358 SIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 +++V + ++ L G S + I +++ G + RGD + + SM F Sbjct: 396 TVSVAIKDRQSLNPDTGEVVHTPIPASEINAIRQVLIGTVGFDENRGDLLNVLSMQF 452 >gi|269961618|ref|ZP_06175980.1| flagellar M-ring protein [Vibrio harveyi 1DA3] gi|269833659|gb|EEZ87756.1| flagellar M-ring protein [Vibrio harveyi 1DA3] Length = 580 Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 88/421 (20%), Positives = 191/421 (45%), Gaps = 38/421 (9%) Query: 19 RTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76 R +L+L+ I V +MLF F+V P L E ++ + L + I++++ Sbjct: 53 RQVVLVLSISICVALIVMLF----FWVKEPEMRPLGA-YETEELIPVLDYLDQQKINYKL 107 Query: 77 SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136 +G++ISV SS ++ + G+ + ++ +G ++ + FG++ +++ + E Sbjct: 108 --DGNTISVESSDYNSIKLGMVRAGV-NQATAAGDDILLQDMGFGVSQRLEQERLKLSRE 164 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHL 194 ++A+ I+ + + ARV + +P F + +ASV + + K E +I + Sbjct: 165 RQLAQAIEEMKQVRKARVLLALPKHSVFVRHNQEASASVFLTLSTGANLKQQEVDSIVDM 224 Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKALAAF 252 VA+AVP + +TV D G+LL++ + K + ++ + + I+ L Sbjct: 225 VASAVPGMKTSRITVTDQHGRLLSSGSQDPASAARRKEQELERSQEQALREKIDSVLLPI 284 Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------TSQPE 303 LG N+ + V +++ T + +DP++ RS +D ++QP Sbjct: 285 LGFGNYTAQVDIQMDFSTVEQTRKNFDPNTPATRSEYALEDYNNGNMVAGIPGALSNQPP 344 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 + ++ Q++ + D + + + + +KE N+E++T L R +++V + Sbjct: 345 ADASIPQDVAQMKDGSL----TGQGSVRKESTRNFELDTTISHERKQTGTLARQTVSVAI 400 Query: 364 NKGRLTEVLGRSADQGKI------DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 R + D G++ +S + I +++ G + RGD + + S+ F E + Sbjct: 401 KDRRTV-----NPDTGEVTYTPLSESEINAIRQVLIGTVGFDQNRGDLLNVLSVKFAEPE 455 Query: 418 L 418 L Sbjct: 456 L 456 >gi|294140203|ref|YP_003556181.1| flagellar M-ring protein FliF [Shewanella violacea DSS12] gi|293326672|dbj|BAJ01403.1| flagellar M-ring protein FliF [Shewanella violacea DSS12] Length = 571 Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 97/445 (21%), Positives = 199/445 (44%), Gaps = 31/445 (6%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y L +++ ++ ++ L + I+++I N I VP ++ L+ + Sbjct: 61 LWAQEPEYRPLG-QMDTQEMVKVLDVLDKNKINYQI--NVDVIKVPEDQYQAVKLLLSRE 117 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 G+ S+SS + Y + + FG++ M++ + E +AR I+ + I A+V + +P Sbjct: 118 GIDSASSQNDY--LSQDSGFGVSQRMEQARLKHSQELNLARAIEELRSISRAKVILAIPK 175 Query: 161 MGSFRKIGARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + A+P+A+V++ + + +A+ +VA+AV L VTV DS G+LL + Sbjct: 176 ENVFSRNRAKPSATVVLNVRRGGLGQEEVDAVVDIVASAVQGLIPTRVTVTDSNGRLLNS 235 Query: 220 NEME--RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 + + L +VQ + E + L LG +NF S V ++ MD + + Sbjct: 236 GSQDAVSARARRELELVQQKEVEYRTKVQSILMPILGPENFTSQV--DVTMDFTAVEQTS 293 Query: 278 --YDPDSKVERS-IRLSKDAQRSETSQPESAVT----VEQNMPHVSDRKVPLPRSLENTD 330 Y+PD RS + + ++ S A++ +E ++P + + + Sbjct: 294 KRYNPDLPALRSEMTVENNSDGGSASGIPGALSNQPPMESDIPQDALNAEETSSASRGSS 353 Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY------ 384 +E N+E++T +I+ T R V + G + + G+I+ Sbjct: 354 HREATRNFELDT-TISHTRQQVGTVRRVSVSVAVDYK----SGAAGEDGQINRVPRTELE 408 Query: 385 LAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALV 444 L+ I +++ A G +++RGD + + ++ F++ L + ++ R + ++ Sbjct: 409 LSNIRRLLEGAVGFSTQRGDVLEVVTVPFMDQLLEEAPAPELWEQPWFWRALKLGVGGMI 468 Query: 445 FLVGTLLVTFLGLHALRRLHNIDDA 469 L L+ F+ L+RL D A Sbjct: 469 ILA---LILFIVRPMLKRLIYPDSA 490 >gi|117919790|ref|YP_868982.1| flagellar MS-ring protein [Shewanella sp. ANA-3] gi|117612122|gb|ABK47576.1| flagellar M-ring protein FliF [Shewanella sp. ANA-3] Length = 561 Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 99/426 (23%), Positives = 194/426 (45%), Gaps = 25/426 (5%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y L K+E ++ ++ L + I ++I + + VP + ++ L+ Sbjct: 53 IWAQEPEYRPLG-KMETQEMVQVLDVLDKNKIKYQIEVD--VVKVPEDKYQEVKMMLSRA 109 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 G+ +S + S + + + FG++ M++ + E +AR I+ + + A+V + +P Sbjct: 110 GV-NSPAASTQDFLTQDSGFGVSQRMEQARLKHSQEENLARAIEQLQSVSRAKVILALPK 168 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + ++P+A+V+I + + +AI +VA+AV L+ VTV DS G+LL + Sbjct: 169 ENVFARNTSQPSATVVINTRRGGLGQGEVDAIVDIVASAVQGLEPSRVTVTDSNGRLLNS 228 Query: 220 NEMERNILGKS---LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 + I ++ L +VQ + E I+ L+ LG DNF S V +++MD + + Sbjct: 229 GSQD-GISARARRELELVQQKEAEYRTKIDSILSPILGPDNFTSQV--DVSMDFTAVEQT 285 Query: 277 V--YDPDSKVERS-IRLSKDAQRSETSQPESAVT----VEQNMPHVSDRKVPLPRSLENT 329 ++PD RS + + ++ T A++ +E N+P D Sbjct: 286 AKRFNPDLPSLRSEMTVENNSTGGSTGGIPGALSNQPPMESNIPQ--DATKATESVTAGN 343 Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVV---VNKGRLTEVLGRSADQGKIDSYLA 386 +E N+E++T +I+ T + R V G E G+ A + + L Sbjct: 344 SHREATRNFELDT-TISHTRQQIGVVRRVSVSVAVDFKPGAAGEN-GQVARVARTEQELT 401 Query: 387 EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFL 446 I +++ A G +++RGD + + ++ F++ + + ++ R I ALV L Sbjct: 402 NIRRLLEGAVGFSAQRGDVLEVVTVPFMDQLVEDVPAPELWEQPWFWRAVKLGIGALVIL 461 Query: 447 VGTLLV 452 V L V Sbjct: 462 VLILAV 467 >gi|169827120|ref|YP_001697278.1| flagellar MS-ring protein [Lysinibacillus sphaericus C3-41] gi|168991608|gb|ACA39148.1| Flagellar M-ring protein [Lysinibacillus sphaericus C3-41] Length = 531 Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 65/282 (23%), Positives = 132/282 (46%), Gaps = 17/282 (6%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 QF+KS + + +I+++ S++ V I L FF + Y LY L ++ ++ AL Sbjct: 14 QFWKSRSK--KQKIVMIGSLVGV-IALAAIVTFFASKTTYVPLYKDLSTREIGQVKEALD 70 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 + ++I+ G+SI VP V + LA++G P + + Y F + FG+T Sbjct: 71 SQGVTYQIAPGGTSILVPEEQVDSLLVQLASEGYPQTGT-IDYS-FANSSGFGMTDNEFN 128 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINPSVYKS 187 + + A E EIA+ +++ G+ A+V I +P+ G F + TAS+++ +P YK Sbjct: 129 LLKKAATETEIAKLFRNLEGVKDAKVMITVPEEGVFVTDVKEDATASIVLNT-DPG-YKF 186 Query: 188 AE----AIRHLVAAAVPNLDMGDVTVLDSTGKLL-----TANEMERNILGKSLSIVQAIQ 238 E + +LV+ ++PNL ++ + + + T + L + + ++ Sbjct: 187 TEQQITTMYNLVSKSIPNLKTENIVISNQFSEYFDLNAATTDGASTTTAEGQLQMKKLVE 246 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP 280 +++ + L +G D +V +++ + E + P Sbjct: 247 RDLQRQVQNMLGTLMGQDKVMVSVTTDIDFKKENREENLVTP 288 >gi|218708823|ref|YP_002416444.1| flagellar MS-ring protein [Vibrio splendidus LGP32] gi|218321842|emb|CAV17815.1| Flagellar M-ring protein [Vibrio splendidus LGP32] Length = 580 Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 90/417 (21%), Positives = 184/417 (44%), Gaps = 40/417 (9%) Query: 19 RTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76 R +L+L+ I V +MLF F+V P L E ++ + L I++ + Sbjct: 54 RQVVLVLSISICVALIVMLF----FWVKEPEMRPLGA-YETEELIPVLDYLDTQKIEYSL 108 Query: 77 SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136 G++ISVP+S ++++ GL + N+G ++ + FG++ +++ + E Sbjct: 109 E--GNTISVPASEYNSLKLNMVRAGL-NQERNTGDDILMQDMGFGVSQRLEKERLKLSRE 165 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHL 194 ++A+ I+ + + A+V + +P F + +ASV + + K E ++ + Sbjct: 166 RQLAKAIEQMKQVRKAQVLLALPKQSVFVRHNQEASASVFLTLKTGTNLKQQEVDSVVDM 225 Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN--------IN 246 VA+AVP + +TV D G+LL++ + +S + +HE+E N I+ Sbjct: 226 VASAVPGMKTSRITVTDQHGRLLSSGSQD------PMSAARRKEHELERNQEQALREKID 279 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE-------- 298 L LG N+ + V +L+ + +DP++ RS +D Sbjct: 280 SILIPILGFGNYTAQVDIQLDFSAVEQTRKRFDPNTPATRSEYTLEDYNNGNVVAGIPGA 339 Query: 299 -TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 ++QP + ++ Q++ + D + S+ KE N+E++T + + R Sbjct: 340 LSNQPPADASIPQDVAQMKDGTMMGQGSVH----KEATRNFELDTTISHERKQSGTVNRQ 395 Query: 358 SIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 +++V + ++ L G S + I +++ G + RGD + + SM F Sbjct: 396 TVSVAIKDRQSLNPDTGEVVHTPIPASEINAIRQVLIGTVGFDENRGDLLNVLSMQF 452 >gi|86146136|ref|ZP_01064462.1| flagellar M-ring protein [Vibrio sp. MED222] gi|85836083|gb|EAQ54215.1| flagellar M-ring protein [Vibrio sp. MED222] Length = 580 Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 90/417 (21%), Positives = 184/417 (44%), Gaps = 40/417 (9%) Query: 19 RTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76 R +L+L+ I V +MLF F+V P L E ++ + L I++ + Sbjct: 54 RQVVLVLSISICVALIVMLF----FWVKEPEMRPLGA-YETEELIPVLDYLDTQKIEYSL 108 Query: 77 SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136 G++ISVP+S ++++ GL + N+G ++ + FG++ +++ + E Sbjct: 109 E--GNTISVPASEYNSLKLNMVRAGL-NQERNTGDDILMQDMGFGVSQRLEKERLKLSRE 165 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHL 194 ++A+ I+ + + A+V + +P F + +ASV + + K E ++ + Sbjct: 166 RQLAKAIEQMKQVRKAQVLLALPKQSVFVRHNQEASASVFLTLKTGTNLKQQEVDSVVDM 225 Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN--------IN 246 VA+AVP + +TV D G+LL++ + +S + +HE+E N I+ Sbjct: 226 VASAVPGMKTSRITVTDQHGRLLSSGSQD------PMSAARRKEHELERNQEQALREKID 279 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE-------- 298 L LG N+ + V +L+ + +DP++ RS +D Sbjct: 280 SILIPILGFGNYTAQVDIQLDFSAVEQTRKRFDPNTPATRSEYTLEDYNNGNVVAGIPGA 339 Query: 299 -TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 ++QP + ++ Q++ + D + S+ KE N+E++T + + R Sbjct: 340 LSNQPPADASIPQDVAQMKDGTMMGQGSVH----KEATRNFELDTTISHERKQSGTVNRQ 395 Query: 358 SIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 +++V + ++ L G S + I +++ G + RGD + + SM F Sbjct: 396 TVSVAIKDRQSLNPDTGEVVHTPIPASEINAIRQVLIGTVGFDENRGDLLNVLSMQF 452 >gi|330828799|ref|YP_004391751.1| flagellar M-ring protein FliF [Aeromonas veronii B565] gi|328803935|gb|AEB49134.1| Flagellar M-ring protein FliF [Aeromonas veronii B565] Length = 569 Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 91/417 (21%), Positives = 182/417 (43%), Gaps = 23/417 (5%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 F S T + R LIL I + I +F+ + P L V + L + Sbjct: 31 FLSNTDVLRQITLILGLAICLAIAVFIL--LWGKEPDMRPLGTYTTQELVKTLDF-LDQQ 87 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNS--GYELFDKVNSFGLTSFMQE 128 I + + +G S+ V + ++ L GL +++ ++ G ++ K +SFG++ M+ Sbjct: 88 KIPYEV--DGKSVLVNAESYPTIQLALTRAGLANATDSNIGGEDILLKDSSFGVSQRMES 145 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS- 187 + E ++A I+ + A+V + +P F + +P+A+V++ ++ + Sbjct: 146 ERLKLSRERQLASAIEQFQNVAKAQVLLAIPKDNVFARNERKPSATVVLNLKGAALGQGE 205 Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNI 245 ++I +VA+AV L+ VTV D G+LL + + K ++ Q + E + I Sbjct: 206 VDSIVDMVASAVHGLEPTRVTVTDQNGRLLNSGSQDPISAQTRKEFAMQQKQELEYKQKI 265 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS----- 300 + L LG DN+ + V L+ Q+ Y+PD RS ++ S ++ Sbjct: 266 DAILIPVLGADNYTAEVDLSLDFSQQEQTRKTYNPDLPAVRSEMTMEENSASGSNGGVPG 325 Query: 301 ----QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 QP +A N+P + + +KE N+E++T T + R Sbjct: 326 ALSNQPPAA----SNIPEEATGGDGASAAASGRSRKEATRNFELDTTVSHTRRQMGGIRR 381 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 ++++V V+ + G + + + L + +++S G + RGDT+ + ++ F Sbjct: 382 MTVSVAVDYKAVPGADGAVTREARTQAELDTLRRLLSGGLGFDVTRGDTLEVVAIPF 438 >gi|156975431|ref|YP_001446338.1| flagellar MS-ring protein [Vibrio harveyi ATCC BAA-1116] gi|156527025|gb|ABU72111.1| hypothetical protein VIBHAR_03162 [Vibrio harveyi ATCC BAA-1116] Length = 580 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 88/421 (20%), Positives = 191/421 (45%), Gaps = 38/421 (9%) Query: 19 RTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76 R +L+L+ I V +MLF F+V P L E ++ + L + I++++ Sbjct: 53 RQVVLVLSISICVALIVMLF----FWVKEPEMRPLGA-YETEELIPVLDYLDQQKINYKL 107 Query: 77 SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136 +G++ISV SS ++ + G+ + ++ +G ++ + FG++ +++ + E Sbjct: 108 --DGNTISVESSDYNSIKLGMVRAGV-NQATAAGDDILLQDMGFGVSQRLEQERLKLSRE 164 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHL 194 ++A+ I+ + + ARV + +P F + +ASV + + K E +I + Sbjct: 165 RQLAQAIEEMKQVRKARVLLALPKHSVFVRHNQEASASVFLTLSTGANLKQQEVDSIVDM 224 Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKALAAF 252 VA+AVP + +TV D G+LL++ + K + ++ + + I+ L Sbjct: 225 VASAVPGMKTSRITVTDQHGRLLSSGSQDPASAARRKEQELERSQEQALREKIDSVLLPI 284 Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------TSQPE 303 LG N+ + V +++ T + +DP++ RS +D ++QP Sbjct: 285 LGFGNYTAQVDIQMDFSTVEQTRKNFDPNTPSTRSEYALEDYNNGNMVAGIPGALSNQPP 344 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 + ++ Q++ + D + + + + +KE N+E++T L R +++V + Sbjct: 345 ADASIPQDVAQMKDGTL----TGQGSVRKESTRNFELDTTISHERKQTGTLARQTVSVAI 400 Query: 364 NKGRLTEVLGRSADQGKI------DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 R + D G++ +S + I +++ G + RGD + + S+ F E + Sbjct: 401 KDRRTV-----NPDTGEVTYTPLSESEINAIRQVLIGTVGFDENRGDLLNVLSVKFAEPE 455 Query: 418 L 418 L Sbjct: 456 L 456 >gi|317129209|ref|YP_004095491.1| flagellar M-ring protein FliF [Bacillus cellulosilyticus DSM 2522] gi|315474157|gb|ADU30760.1| flagellar M-ring protein FliF [Bacillus cellulosilyticus DSM 2522] Length = 532 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 112/229 (48%), Gaps = 14/229 (6%) Query: 36 FMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARI 95 F+A +F + +Y LY L V + I L + +S +G+SI VP + V + ++ Sbjct: 38 FLAFMWFGSRTNYVPLYSNLTVQETGEIKNTLDARGVPSEVSSDGTSILVPEAQVNELKV 97 Query: 96 HLAAQGLPSSSSNSG---YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 LAA+GLP NSG Y F + FG T + AL+ I I++I G+ A Sbjct: 98 SLAAEGLP----NSGRIDYSTFSENMGFGTTDNTFNLLERAALQTSIEDLIRNIDGVRNA 153 Query: 153 RVHIVMPDMGSFRKIGAR-PTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTV 209 +V I +P+ + TASV++ + + A+ HLV+ ++PNL + ++ + Sbjct: 154 QVMITLPEESVWLSDDREAATASVLLNLDHGYSLDQNQVRALYHLVSRSIPNLPVENIVM 213 Query: 210 LDSTGKLLTANEMERNILGKSLSIVQ---AIQHEIEMNINKALAAFLGV 255 +D + L ++ + + SL+I + IQ +IE ++ + + LG Sbjct: 214 MDQMSRYLELDD-QTTTVDSSLTIYEQQRQIQRDIERDLQRQVQQMLGT 261 >gi|237751136|ref|ZP_04581616.1| flagellar M-ring protein [Helicobacter bilis ATCC 43879] gi|229373581|gb|EEO23972.1| flagellar M-ring protein [Helicobacter bilis ATCC 43879] Length = 563 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 93/369 (25%), Positives = 173/369 (46%), Gaps = 46/369 (12%) Query: 67 LSEANIDFR-ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L + NI ++ I+DN +I+VP V R LAAQG+ + Y++F++ NSFG T Sbjct: 74 LKQQNIPYKMINDN--TIAVPQDQVFVLRNELAAQGIIKGRVD--YDIFNE-NSFGATQS 128 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 ++ ++RA++G++ +T+ +++ I ARV I P F K A P+ASV + + Sbjct: 129 EFDVKKLRAIKGQLEKTLMALAPIQDARVEIAEPKDDVFVKTRAVPSASVALTLRDGMTL 188 Query: 186 KSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLSIVQAIQHE 240 + I++L+A + L +V ++D G L + +E K+ + + E Sbjct: 189 TQNQIFGIQNLIANSFNGLKPENVIMVDQYGNPLNKRDEATIENEQAFKNFAYKVQAEQE 248 Query: 241 IEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS-- 297 I I ++L+ G D +V + + Q+ E +Y +S V + K+ +R Sbjct: 249 IANKIRQSLSRLAGGTDRMTVSVNLDYDFGKQESTEEIYSKESAV--ASESGKEIERKGL 306 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ-----SNYEINTKSIATTHDNY 352 P V N+ V D L++ +++E + NY + K+ Sbjct: 307 APKDPGGVPGVINNIAEVKD--------LDSNNREEYRESQFVKNYMPDKKTTTMRLQTP 358 Query: 353 KLERLSIAVVVN----------KGRLT-EVLGRSADQGKIDSYLAEINKIVSAATGINSR 401 +L+R+++ VV++ G +T + RS ++ LAEI KIV A++G + Sbjct: 359 QLKRMTVGVVIDGTYTEETNEETGFITMKYTPRSPEE------LAEIKKIVEASSGYDES 412 Query: 402 RGDTITITS 410 R D +++ + Sbjct: 413 RNDIVSVIA 421 >gi|262404479|ref|ZP_06081034.1| flagellar M-ring protein FliF [Vibrio sp. RC586] gi|262349511|gb|EEY98649.1| flagellar M-ring protein FliF [Vibrio sp. RC586] Length = 580 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 101/437 (23%), Positives = 186/437 (42%), Gaps = 54/437 (12%) Query: 8 LQFFKSGTSLGRTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 + F L R +L+L+ I V +MLF F+V P L E ++ + Sbjct: 43 MDFTVGDLDLLRQVVLVLSISICVALIVMLF----FWVREPDMRPLGA-YETEELIPVLD 97 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L + +++ +G++I VP S ++ + GL + +G E+ + FG++ Sbjct: 98 YLDQQKQQYKL--DGNTILVPVSDYNSLKLSMVRAGL-NQERQAGDEILMQDMGFGVSQR 154 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 +++ + E ++A+ I+ + I ARV + +P F + +ASV + + Sbjct: 155 LEQERLKLSRERQLAKAIEEMRQINKARVLLALPKQSVFVRQNQEASASVFLSLRTGANL 214 Query: 186 KSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEM 243 K E A+ +VA+AVP + VTV D G+LL++ + +S + + E+E Sbjct: 215 KQEEIDAVVDMVASAVPGMKPSRVTVTDQHGRLLSSGSQD------PVSAARRKEQELEK 268 Query: 244 N--------INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 I+ L LG+ N+ + V EL+ + V+DP++ RS +D Sbjct: 269 QQEDVLRDKIDSVLIPILGLGNYTAQVDIELDFSAVEQTRKVFDPNTPATRSEYTLEDYN 328 Query: 296 RSE---------TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346 ++QP + ++ Q++ + D V S+ KE N+E++T Sbjct: 329 NGNVVAGVPGALSNQPPADASIPQDVAQMKDGSVMGQGSVH----KEATRNFELDTTISH 384 Query: 347 TTHDNYKLERLSIAVVV--------NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 + + R ++AV V + G +T AD L I +I+ G Sbjct: 385 ERKQSGVVNRQTVAVAVKSRSNVNPDTGEITYTPLSEAD-------LNSIRQILIGTVGY 437 Query: 399 NSRRGDTITITSMDFLE 415 + RGD + + SM F E Sbjct: 438 SENRGDLLNVLSMQFAE 454 >gi|126653749|ref|ZP_01725667.1| flagellar M-ring protein [Bacillus sp. B14905] gi|126589713|gb|EAZ83849.1| flagellar M-ring protein [Bacillus sp. B14905] Length = 531 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 67/284 (23%), Positives = 134/284 (47%), Gaps = 21/284 (7%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 QF+KS + + +I+++ S++ V I L FF + Y LY L ++ ++ AL Sbjct: 14 QFWKSRSK--KQKIVMVGSLVGV-IALAAIVTFFASKTTYVPLYKDLSTREIGQVKEALD 70 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 + ++I+ G+SI VP V + LA++G P + + Y F + FG+T Sbjct: 71 SQGVTYQIAPGGTSILVPEEQVDSLLVQLASEGYPQTGT-IDYS-FANSSGFGMTDNEFN 128 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINPSVYKS 187 + + A E EIA+ +++ G+ A+V I +P+ G F + TAS+++ +P YK Sbjct: 129 LLKKAATETEIAKLFRNLEGVKDAKVMITVPEEGVFVTDVKEDATASIVLNT-DPG-YKF 186 Query: 188 AE----AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS-------LSIVQA 236 E + +LV+ ++PNL ++ + + + N + G S L + + Sbjct: 187 TEQQITTMYNLVSKSIPNLKTENIVISNQFSEYFDLNAATTD--GTSTATAEGQLQMKKL 244 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP 280 ++ +++ + L +G D +V +++ + E + P Sbjct: 245 VERDLQRQVQNMLGTLMGQDKVMVSVTTDIDFKKENREENLVTP 288 >gi|153834153|ref|ZP_01986820.1| flagellar M-ring protein FliF [Vibrio harveyi HY01] gi|148869523|gb|EDL68521.1| flagellar M-ring protein FliF [Vibrio harveyi HY01] Length = 580 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 88/421 (20%), Positives = 191/421 (45%), Gaps = 38/421 (9%) Query: 19 RTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76 R +L+L+ I V +MLF F+V P L E ++ + L + I++++ Sbjct: 53 RQVVLVLSISICVALIVMLF----FWVKEPEMRPLGA-YETEELIPVLDYLDQQKINYKL 107 Query: 77 SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136 +G++ISV SS ++ + G+ + ++ +G ++ + FG++ +++ + E Sbjct: 108 --DGNTISVESSDYNSIKLGMVRAGV-NQATAAGDDILLQDMGFGVSQRLEQERLKLSRE 164 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHL 194 ++A+ I+ + + ARV + +P F + +ASV + + K E +I + Sbjct: 165 RQLAQAIEEMKQVRKARVLLALPKHSVFVRHNQEASASVFLTLSTGANLKQQEVDSIVDM 224 Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKALAAF 252 VA+AVP + +TV D G+LL++ + K + ++ + + I+ L Sbjct: 225 VASAVPGMKTSRITVTDQHGRLLSSGSQDPASAARRKEQELERSQEQALREKIDSVLLPI 284 Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------TSQPE 303 LG N+ + V +++ T + +DP++ RS +D ++QP Sbjct: 285 LGFGNYTAQVDIQMDFSTVEQTRKNFDPNTPSTRSEYALEDYNNGNMVAGIPGALSNQPP 344 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 + ++ Q++ + D + + + + +KE N+E++T L R +++V + Sbjct: 345 ADASIPQDVAQMKDGTL----TGQGSVRKESTRNFELDTTISHERKQTGTLARQTVSVAI 400 Query: 364 NKGRLTEVLGRSADQGKI------DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 R + D G++ +S + I +++ G + RGD + + S+ F E + Sbjct: 401 KDRRTV-----NPDTGEVTYTPLSESEINAIRQVLIGTVGFDENRGDLLNVLSVKFAEPE 455 Query: 418 L 418 L Sbjct: 456 L 456 >gi|224174161|ref|XP_002339855.1| predicted protein [Populus trichocarpa] gi|222832385|gb|EEE70862.1| predicted protein [Populus trichocarpa] Length = 312 Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 100/203 (49%), Gaps = 3/203 (1%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 Q+F SL TR L L ++I V + ++ F+ P LY L+ + L Sbjct: 111 QWFDRLQSLQITRRLGLMAMIAVAVAAGLSVFFWSQKPGMVPLYTGLDQKATAEATDLLR 170 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 A I F + I+VP + AR+ LA GL + S G+EL ++ FG++ F++ Sbjct: 171 AAQIPFALDPATGGITVPEKNLHDARLKLAGSGL-TDSGKLGFELMERDPGFGVSQFVES 229 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYK 186 ALE E++RTI ++ + +RVH+ +P +F + +ASV +R Sbjct: 230 ARYQHALETELSRTINTLRPVRDSRVHLAIPKPSAFTRQRDVASASVTLELRGGQQLERS 289 Query: 187 SAEAIRHLVAAAVPNLDMGDVTV 209 +AI H+VAA++P+L VTV Sbjct: 290 QVDAIVHMVAASIPDLAPERVTV 312 >gi|77359741|ref|YP_339316.1| flagellar MS-ring protein [Pseudoalteromonas haloplanktis TAC125] gi|76874652|emb|CAI85873.1| flagellar biosynthesis; basal-body MS(membrane and supramembrane)-ring and collar protein [Pseudoalteromonas haloplanktis TAC125] Length = 571 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 102/461 (22%), Positives = 203/461 (44%), Gaps = 49/461 (10%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 SG + R LI+A I + I +F+ + P L K+ ++ + L I Sbjct: 37 SGVDVLRQVTLIIALAICLAIAIFVI--IWARQPDMRPLG-KMPTEELIQTLDFLDAQKI 93 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 D+++ +G+ +SV S ++ + +GL SG ++ + FG++ ++ Sbjct: 94 DYQL--DGNVVSVDESEYQNIKLLMTREGL-DQGPTSGSDIIMQDMGFGVSQRLERERLK 150 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKS 187 E ++ARTI+ ++ I A+V + +P F + +P+A+V++ R++N + Sbjct: 151 HGREQQLARTIEELNNITRAKVLLAIPKENVFARREKKPSATVVLTLKRGRSLN---SEE 207 Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG----KSLSIVQAIQHEIEM 243 +++ ++A+AV L+ VTV D G+LL N ++ L K + + + E Sbjct: 208 VDSVVDMIASAVQGLEPARVTVTDQNGRLL--NSGSQSSLSARSRKEYDLERKREQEYLE 265 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIV--YDPDSKVERSIRLSKDAQRSETSQ 301 I+ L +G+ N+ + V +L+MD + E Y+PD A RSET+ Sbjct: 266 KIDSILIPIVGLSNYTAQV--DLSMDFSSLEETQKRYNPDLP----------AVRSETTF 313 Query: 302 PESAV---------------TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346 E+ + V ++P V+ + + + KE NYE++T Sbjct: 314 EENNIGGLAVGIPGALSNQPPVNSDIPEVAGQGGAGSVTSPSRTHKEATRNYELDTTISH 373 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 + + R+S++V V+ G + + L+ I +++ G + +RGD + Sbjct: 374 KRQQSGTIRRISVSVAVDYLPTVGENGETTMTPRSVEALSNIRRLLQGGVGFDIQRGDAL 433 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447 + ++ F+ + S V + D + V+ ALV +V Sbjct: 434 EVVTVPFVREAVDMSFEVPLWEQDWFMKIVRLVLAALVIIV 474 >gi|262276395|ref|ZP_06054204.1| flagellar M-ring protein FliF [Grimontia hollisae CIP 101886] gi|262220203|gb|EEY71519.1| flagellar M-ring protein FliF [Grimontia hollisae CIP 101886] Length = 586 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 97/440 (22%), Positives = 199/440 (45%), Gaps = 48/440 (10%) Query: 13 SGTSLGRTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 G + R IL+ A I + ++LFM +V P L E ++ + L + Sbjct: 46 GGMDIARQLILVAAVAICISLVVLLFM----WVQEPEMRPLGT-YETEELIPVLDHLDQQ 100 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 ID+ + +G++I VP+ +++L+ GL +S++ G ++ + FG++ Q++ Sbjct: 101 KIDYTL--DGNTIRVPAKDYSSIKLNLSRAGL-NSATEEGDDILMQDMGFGVS---QQLE 154 Query: 131 RVR---ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVY 185 R R + E ++A I+ I + ARV + MP F + +A+V +R Sbjct: 155 RERLKLSRERQLAAAIEKIRAVSKARVLLAMPKQSVFVRHNQEASATVFLTVRGTTQLGQ 214 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEM 243 + ++I +VA+AVP+L VTV D G+LL++ + + K + + + + Sbjct: 215 EEVDSIVDMVASAVPSLKPSRVTVTDQHGRLLSSGSQDPIASQRRKEYELERKQEQALRE 274 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREI--VYDPDSKVERSIRLSKDAQRSE--- 298 I+ L LG+ N+ S V ++ MD + E +DP + RS ++ ++ Sbjct: 275 KIDAILIPVLGLGNYTSQV--DVTMDFSAVEETRKRFDPATPSTRSEYTRENYNNTDYVA 332 Query: 299 ------TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 ++QP ++ +++ + + SL +E NYE++T Sbjct: 333 GVPGALSNQPPVDSSIPEDIQDLRNGGAGDKGSL----SREATRNYELDTTISHRRGQTG 388 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKI------DSYLAEINKIVSAATGINSRRGDTI 406 + R +++V V+ + + + G+I D+ L +I +++ G RGD + Sbjct: 389 TIARQTVSVAVDY-----IASTNPETGEITRTPVSDAELEKIRRLLVGGVGYTENRGDIL 443 Query: 407 TITSMDFLENQLFNSGTVQV 426 + ++ F+E ++ + G V + Sbjct: 444 EVLAVPFVEPEVVSLGDVPI 463 >gi|116327841|ref|YP_797561.1| flagellar MS-ring protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330717|ref|YP_800435.1| flagellar MS-ring protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116120585|gb|ABJ78628.1| Endoflagellar biosynthesis/type III secretory pathway protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124406|gb|ABJ75677.1| Endoflagellar biosynthesis/type III secretory pathway protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 566 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 116/458 (25%), Positives = 202/458 (44%), Gaps = 71/458 (15%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASV---ILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 IL+ + +FF T+L T+ LIL V +LV I + N L+ L D Sbjct: 8 ILNNIREFF---TTLDTTKKLILGGVALTVLVAIGILSTISLQKNRVV---LFKDLTSKD 61 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 ++ L + SD S I+V + LA + L + G+ELF+ V+ Sbjct: 62 FAEVTKKLDSLGYQYGSSDT-SVITVDPEQRQEIVTKLAQENLIPAGVQ-GWELFN-VDK 118 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 F T F ++I + RAL+G I +++ ++ + A V+I P+ F + ASV++ Sbjct: 119 FTETQFDKDIKKYRALKGAIEQSLMTLRSVDKAYVNIAFPEDELFSSNSSPVKASVILHY 178 Query: 180 INPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-------MERNILG 228 I P V K + I +LV+ AVP L +V+V D+ GK+++ E +E I+ Sbjct: 179 I-PGVESLSRKEVKGIVNLVSRAVPKLKPENVSVADADGKIISDFEEDLEKERLELRIVQ 237 Query: 229 KSLSI--VQAIQHEIEMNINKALAAFLGVDNFRSAVVAE--LNMDTQQIRE-----IVYD 279 + L I Q IQ I+M L LG ++ E LN D + ++ +V Sbjct: 238 EKLRIGEEQRIQRLIDM--RNTLRWLLGGEDRVDITRFEYNLNWDKESYKDNSVSPVVAI 295 Query: 280 PDS--------------KVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRS 325 PD+ ++ S + +K+ + P+ E N+P Sbjct: 296 PDNPNTPYSELKLVDGYSLKVSSKETKEDFKGRGFTPDGPAGTEPNIPP----------G 345 Query: 326 LENTD-------KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN--KGRLTEVLGRSA 376 ++TD K E +NYE N + +K+E+++++VV++ + + G Sbjct: 346 YKDTDYQKSEYSKSENINNYEFNRRVSEVQKQPWKVEKVNLSVVIDGMWEKKEKEDGTGY 405 Query: 377 DQGKI---DSYLAEINKIVSAATGINSRRGDTITITSM 411 D+ I + L +I K + +A GI+ RGD I++ ++ Sbjct: 406 DRKYIPVSEDELRQIRKNLESAVGIDKARGDQISVITI 443 >gi|297584035|ref|YP_003699815.1| flagellar M-ring protein FliF [Bacillus selenitireducens MLS10] gi|297142492|gb|ADH99249.1| flagellar M-ring protein FliF [Bacillus selenitireducens MLS10] Length = 528 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 67/256 (26%), Positives = 130/256 (50%), Gaps = 19/256 (7%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNS-PHYDNLYVKLEVSDVNRISVAL 67 +F++S + + R L++ +V+L I+ F+ A +V S + LY L + + I L Sbjct: 14 EFWQSRSK--KQRGLLIGAVVL--IIAFIIALSWVGSRTNLVPLYSNLTIQETGEIKANL 69 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 I +S +G+SI VP + V ++ LAA+G+P + Y F FG T Sbjct: 70 DGRGIQNEVSADGTSILVPETAVDNLKVELAAEGIP-QTGRIDYGTFGDNMGFGTTDSEF 128 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIR-----AIN 181 ++ AL+ + I+++ G+ A+V I +P+ + ++ + TAS+++ +++ Sbjct: 129 QLLERAALQTTLEDLIRNVDGVTNAQVMITLPEESVWLQETPSEATASILLNMQAGYSLD 188 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ---AIQ 238 S +S + HL + +VPNL + ++ ++D + L E + + SLS+ + AIQ Sbjct: 189 ESQIRS---LYHLASRSVPNLPVENIVIMDQFSRYLEL-EDQPGMADSSLSVYEQHRAIQ 244 Query: 239 HEIEMNINKALAAFLG 254 +IE ++ + L LG Sbjct: 245 RDIERDLQRDLQQMLG 260 >gi|258511371|ref|YP_003184805.1| flagellar M-ring protein FliF [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478097|gb|ACV58416.1| flagellar M-ring protein FliF [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 507 Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 61/183 (33%), Positives = 95/183 (51%), Gaps = 18/183 (9%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSS 105 PHY + L+ + ++ L I I G+++ VP+ +ARI LA GLP Sbjct: 48 PHYVTIMEGLDDKSLGQVQQELDTLKIPNEI--QGTAVLVPARYADEARIQLAMAGLP-- 103 Query: 106 SSNSGYELFDKVN-SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 SGY+ + V S G T + + AL+ ++ TI I+G+ +A+VHIVMP F Sbjct: 104 --QSGYDAYSGVTTSLGETQDEFNLQVLNALQQSLSTTISDINGVESAQVHIVMPQQQLF 161 Query: 165 RKIGARPT----ASVMIRAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 +PT ASV + + P V S+ I+ LVA +VP L +G+VTV+D G +L Sbjct: 162 V---TQPTTDAKASVFVD-LGPGVQLSSAQVYGIQQLVAHSVPGLTVGNVTVVDQYGNVL 217 Query: 218 TAN 220 +++ Sbjct: 218 SSD 220 >gi|15642132|ref|NP_231764.1| flagellar MS-ring protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121727194|ref|ZP_01680361.1| flagellar M-ring protein FliF [Vibrio cholerae V52] gi|147674591|ref|YP_001217656.1| flagellar MS-ring protein [Vibrio cholerae O395] gi|153801651|ref|ZP_01956237.1| flagellar M-ring protein FliF [Vibrio cholerae MZO-3] gi|153818978|ref|ZP_01971645.1| flagellar M-ring protein FliF [Vibrio cholerae NCTC 8457] gi|153822880|ref|ZP_01975547.1| flagellar M-ring protein FliF [Vibrio cholerae B33] gi|227082258|ref|YP_002810809.1| flagellar M-ring protein FliF [Vibrio cholerae M66-2] gi|229507782|ref|ZP_04397287.1| flagellar M-ring protein FliF [Vibrio cholerae BX 330286] gi|229511981|ref|ZP_04401460.1| flagellar M-ring protein FliF [Vibrio cholerae B33] gi|229513784|ref|ZP_04403246.1| flagellar M-ring protein FliF [Vibrio cholerae TMA 21] gi|229519117|ref|ZP_04408560.1| flagellar M-ring protein FliF [Vibrio cholerae RC9] gi|229522086|ref|ZP_04411503.1| flagellar M-ring protein FliF [Vibrio cholerae TM 11079-80] gi|229607327|ref|YP_002877975.1| flagellar MS-ring protein [Vibrio cholerae MJ-1236] gi|254226365|ref|ZP_04919954.1| flagellar M-ring protein FliF [Vibrio cholerae V51] gi|254849219|ref|ZP_05238569.1| flagellar MS-ring protein [Vibrio cholerae MO10] gi|262153482|ref|ZP_06028612.1| flagellar M-ring protein FliF [Vibrio cholerae INDRE 91/1] gi|262167493|ref|ZP_06035199.1| flagellar M-ring protein FliF [Vibrio cholerae RC27] gi|298497845|ref|ZP_07007652.1| flagellar M-ring protein FliF [Vibrio cholerae MAK 757] gi|9656684|gb|AAF95278.1| flagellar M-ring protein FliF [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121630439|gb|EAX62832.1| flagellar M-ring protein FliF [Vibrio cholerae V52] gi|124122828|gb|EAY41571.1| flagellar M-ring protein FliF [Vibrio cholerae MZO-3] gi|125621115|gb|EAZ49460.1| flagellar M-ring protein FliF [Vibrio cholerae V51] gi|126510473|gb|EAZ73067.1| flagellar M-ring protein FliF [Vibrio cholerae NCTC 8457] gi|126519576|gb|EAZ76799.1| flagellar M-ring protein FliF [Vibrio cholerae B33] gi|146316474|gb|ABQ21013.1| flagellar M-ring protein FliF [Vibrio cholerae O395] gi|227010146|gb|ACP06358.1| flagellar M-ring protein FliF [Vibrio cholerae M66-2] gi|227014029|gb|ACP10239.1| flagellar M-ring protein FliF [Vibrio cholerae O395] gi|229341011|gb|EEO06016.1| flagellar M-ring protein FliF [Vibrio cholerae TM 11079-80] gi|229343806|gb|EEO08781.1| flagellar M-ring protein FliF [Vibrio cholerae RC9] gi|229348965|gb|EEO13922.1| flagellar M-ring protein FliF [Vibrio cholerae TMA 21] gi|229351946|gb|EEO16887.1| flagellar M-ring protein FliF [Vibrio cholerae B33] gi|229355287|gb|EEO20208.1| flagellar M-ring protein FliF [Vibrio cholerae BX 330286] gi|229369982|gb|ACQ60405.1| flagellar M-ring protein FliF [Vibrio cholerae MJ-1236] gi|254844924|gb|EET23338.1| flagellar MS-ring protein [Vibrio cholerae MO10] gi|262024065|gb|EEY42760.1| flagellar M-ring protein FliF [Vibrio cholerae RC27] gi|262030719|gb|EEY49353.1| flagellar M-ring protein FliF [Vibrio cholerae INDRE 91/1] gi|297542178|gb|EFH78228.1| flagellar M-ring protein FliF [Vibrio cholerae MAK 757] Length = 580 Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 99/436 (22%), Positives = 192/436 (44%), Gaps = 46/436 (10%) Query: 8 LQFFKSGTSLGRTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 + F L R +L+L+ I V +MLF F+V P L E ++ + Sbjct: 43 MDFTVGDLDLLRQVVLVLSISICVALIVMLF----FWVREPDMRPLGA-YETEELIPVLD 97 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L + +++ +G++I VP S ++ + GL + + +G E+ + FG++ Sbjct: 98 YLDQQKQQYKL--DGNTILVPVSDYNSLKLSMVRAGL-NQNRQAGDEILMQDMGFGVSQR 154 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 +++ + E ++A+ I+ + + ARV + +P F + +ASV + + Sbjct: 155 LEQERLKLSRERQLAKAIEEMRQVNKARVLLALPKQSVFVRHNQEASASVFLTVRTGANL 214 Query: 186 KSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME------RNILGKSLSIVQAI 237 K E A+ +VA+AVP + VTV D G+LL++ + R +A+ Sbjct: 215 KQEEIDAVVDMVASAVPGMKPSRVTVTDQHGRLLSSGSQDPVSAARRKEQELEKQQEEAL 274 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + +I+ L LG+ N+ + V EL+ + V+DP++ RS +D Sbjct: 275 RGKID----SVLIPILGLGNYTAQVDIELDFSAVEQTRKVFDPNTPATRSEYTLEDYNNG 330 Query: 298 E---------TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 ++QP + ++ Q++ + D V S+ KE NYE++T Sbjct: 331 NVVAGVPGALSNQPPADASIPQDVAQMKDGSVMGQGSVH----KEATRNYELDTTISHER 386 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI------DSYLAEINKIVSAATGINSRR 402 + + R ++AV V K R + + D G++ ++ L I +++ G + R Sbjct: 387 KQSGVINRQTVAVAV-KSRSS----VNPDTGEVTYTPLSEADLNSIRQVLIGTVGYSENR 441 Query: 403 GDTITITSMDFLENQL 418 GD + + SM F E ++ Sbjct: 442 GDLLNVLSMPFAEPEM 457 >gi|254291370|ref|ZP_04962163.1| flagellar M-ring protein FliF [Vibrio cholerae AM-19226] gi|150422700|gb|EDN14654.1| flagellar M-ring protein FliF [Vibrio cholerae AM-19226] Length = 580 Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 99/436 (22%), Positives = 192/436 (44%), Gaps = 46/436 (10%) Query: 8 LQFFKSGTSLGRTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 + F L R +L+L+ I V +MLF F+V P L E ++ + Sbjct: 43 MDFTVGDLDLLRQVVLVLSISICVALIVMLF----FWVREPDMRPLGA-YETEELIPVLD 97 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L + +++ +G++I VP S ++ + GL + + +G E+ + FG++ Sbjct: 98 YLDQQKQQYKL--DGNTILVPVSDYNSLKLSMVRAGL-NQNRQAGDEILMQDMGFGVSQR 154 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 +++ + E ++A+ I+ + + ARV + +P F + +ASV + + Sbjct: 155 LEQERLKLSRERQLAKAIEEMRQVNKARVLLALPKQSVFVRHNQEASASVFLTVRTGANL 214 Query: 186 KSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME------RNILGKSLSIVQAI 237 K E A+ +VA+AVP + VTV D G+LL++ + R +A+ Sbjct: 215 KQEEVDAVVDMVASAVPGMKPSRVTVTDQHGRLLSSGSQDPVSAARRKEQELEKQQEEAL 274 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + +I+ L LG+ N+ + V EL+ + V+DP++ RS +D Sbjct: 275 RGKID----SVLIPILGLGNYTAQVDIELDFSAVEQTRKVFDPNTPATRSEYTLEDYNNG 330 Query: 298 E---------TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 ++QP + ++ Q++ + D V S+ KE NYE++T Sbjct: 331 NVVAGVPGALSNQPPADASIPQDVAQMKDGSVMGQGSVH----KEATRNYELDTTISHER 386 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI------DSYLAEINKIVSAATGINSRR 402 + + R ++AV V K R + + D G++ ++ L I +++ G + R Sbjct: 387 KQSGVINRQTVAVAV-KSRSS----VNPDTGEVTYTPLSEADLNSIRQVLIGTVGYSENR 441 Query: 403 GDTITITSMDFLENQL 418 GD + + SM F E ++ Sbjct: 442 GDLLNVLSMPFAEPEM 457 >gi|121586818|ref|ZP_01676600.1| flagellar M-ring protein FliF [Vibrio cholerae 2740-80] gi|153213259|ref|ZP_01948671.1| flagellar M-ring protein FliF [Vibrio cholerae 1587] gi|153825593|ref|ZP_01978260.1| flagellar M-ring protein FliF [Vibrio cholerae MZO-2] gi|153828635|ref|ZP_01981302.1| flagellar M-ring protein FliF [Vibrio cholerae 623-39] gi|229528855|ref|ZP_04418245.1| flagellar M-ring protein FliF [Vibrio cholerae 12129(1)] gi|262191383|ref|ZP_06049573.1| flagellar M-ring protein FliF [Vibrio cholerae CT 5369-93] gi|297582031|ref|ZP_06943950.1| flagellar M-ring protein FliF [Vibrio cholerae RC385] gi|121548985|gb|EAX59024.1| flagellar M-ring protein FliF [Vibrio cholerae 2740-80] gi|124116059|gb|EAY34879.1| flagellar M-ring protein FliF [Vibrio cholerae 1587] gi|148875906|gb|EDL74041.1| flagellar M-ring protein FliF [Vibrio cholerae 623-39] gi|149740744|gb|EDM54843.1| flagellar M-ring protein FliF [Vibrio cholerae MZO-2] gi|229332629|gb|EEN98115.1| flagellar M-ring protein FliF [Vibrio cholerae 12129(1)] gi|262032758|gb|EEY51306.1| flagellar M-ring protein FliF [Vibrio cholerae CT 5369-93] gi|297533726|gb|EFH72568.1| flagellar M-ring protein FliF [Vibrio cholerae RC385] gi|327484662|gb|AEA79069.1| Flagellar M-ring protein FliF [Vibrio cholerae LMA3894-4] Length = 580 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 99/436 (22%), Positives = 192/436 (44%), Gaps = 46/436 (10%) Query: 8 LQFFKSGTSLGRTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 + F L R +L+L+ I V +MLF F+V P L E ++ + Sbjct: 43 MDFTVGDLDLLRQVVLVLSISICVALIVMLF----FWVREPDMRPLGA-YETEELIPVLD 97 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L + +++ +G++I VP S ++ + GL + + +G E+ + FG++ Sbjct: 98 YLDQQKQQYKL--DGNTILVPVSDYNSLKLSMVRAGL-NQNRQAGDEILMQDMGFGVSQR 154 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 +++ + E ++A+ I+ + + ARV + +P F + +ASV + + Sbjct: 155 LEQERLKLSRERQLAKAIEEMRQVNKARVLLALPKQSVFVRHNQEASASVFLTVRTGANL 214 Query: 186 KSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME------RNILGKSLSIVQAI 237 K E A+ +VA+AVP + VTV D G+LL++ + R +A+ Sbjct: 215 KQEEIDAVVDMVASAVPGMKPSRVTVTDQHGRLLSSGSQDPVSAARRKEQELEKQQEEAL 274 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + +I+ L LG+ N+ + V EL+ + V+DP++ RS +D Sbjct: 275 RGKID----SVLIPILGLGNYTAQVDIELDFSAVEQTRKVFDPNTPATRSEYTLEDYNNG 330 Query: 298 E---------TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 ++QP + ++ Q++ + D V S+ KE NYE++T Sbjct: 331 NVVAGVPGALSNQPPADASIPQDVAQMKDGSVMGQGSVH----KEATRNYELDTTISHER 386 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI------DSYLAEINKIVSAATGINSRR 402 + + R ++AV V K R + + D G++ ++ L I +++ G + R Sbjct: 387 KQSGVINRQTVAVAV-KSRSS----VNPDTGEVTYTPLSEADLNSIRQVLIGTVGYSENR 441 Query: 403 GDTITITSMDFLENQL 418 GD + + SM F E ++ Sbjct: 442 GDLLNVLSMPFAEPEM 457 >gi|218288294|ref|ZP_03492593.1| flagellar M-ring protein FliF [Alicyclobacillus acidocaldarius LAA1] gi|218241653|gb|EED08826.1| flagellar M-ring protein FliF [Alicyclobacillus acidocaldarius LAA1] Length = 507 Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 60/183 (32%), Positives = 95/183 (51%), Gaps = 18/183 (9%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSS 105 PHY + L+ + ++ L I I G+++ VP+ +ARI LA GLP Sbjct: 48 PHYVTIMEGLDDKSLGQVQQELDTLKIPNEI--QGTAVLVPARYADEARIQLAMAGLP-- 103 Query: 106 SSNSGYELFDKVN-SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 SGY+ + + S G T + + AL+ ++ TI I+G+ +A+VHIVMP F Sbjct: 104 --QSGYDAYSGITTSLGETQDEFNLQVLNALQQSLSSTISDINGVESAQVHIVMPQQQLF 161 Query: 165 RKIGARPT----ASVMIRAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 +PT ASV + + P V S+ I+ LVA +VP L +G+VTV+D G +L Sbjct: 162 V---TQPTTDAKASVFVD-LGPGVQLSSAQVYGIQQLVAHSVPGLTVGNVTVVDQYGNVL 217 Query: 218 TAN 220 +++ Sbjct: 218 SSD 220 >gi|85706154|ref|ZP_01037249.1| flagellar M-ring protein FliF [Roseovarius sp. 217] gi|85669318|gb|EAQ24184.1| flagellar M-ring protein FliF [Roseovarius sp. 217] Length = 268 Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 75/267 (28%), Positives = 130/267 (48%), Gaps = 15/267 (5%) Query: 295 QRSETSQPESA-VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 +R+ TS +S+ VTV N+P D + ENT+ +E + NYE+++ T Sbjct: 9 ERANTSNDQSSDVTVASNLPD-GDVAANGASASENTETRE-RINYEVSSTEREITQQPGA 66 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 ++R+S+A+++N + G + + + L + +V AA GI+ RGD +TI ++ F Sbjct: 67 IKRMSVAILINGLTTLDASGTPSFALRPEEELTALRDLVVAAVGIDEARGDVVTIRTLQF 126 Query: 414 LENQLFNSGT-VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR-LHNIDDAKK 471 + SGT V+ S +D L+ T++ +LV + L+ LGL LR L Sbjct: 127 --EPIEPSGTLVEASLLDRLAIDVMTLVQSLVLAIVALI---LGLFVLRPILSRPPLMAS 181 Query: 472 GEVGGKSILSPP---PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 ++G ++ S P P+S + G + ++ D S + + SR SRI+ + Sbjct: 182 SQIGRLAVASQPEIMPLSGVIDDGEIDESGLS-DVSEKALIDRSRQPLSRIDGP-PEDPV 239 Query: 529 LRLLHMIEINEERFAKILRKWARSEIE 555 +RL +I +E +ILR W E E Sbjct: 240 VRLRSLIGQRQEETVEILRNWLEGEEE 266 >gi|119469985|ref|ZP_01612790.1| flagellar M-ring protein [Alteromonadales bacterium TW-7] gi|119446695|gb|EAW27968.1| flagellar M-ring protein [Alteromonadales bacterium TW-7] Length = 571 Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 99/425 (23%), Positives = 188/425 (44%), Gaps = 43/425 (10%) Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L I++++ +G+ + VP + ++ + +GL + SG ++ + FG++ + Sbjct: 88 LDAQKIEYQV--DGNVVLVPETEYQNIKLLMTREGLEQGPT-SGSDIIMQDMGFGVSQRL 144 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 + E ++ARTI+ ++ I ARV + +P F + +P+A+V++ Sbjct: 145 ERERLKHGREQQLARTIEELNNITRARVLLAIPKENVFARREKKPSATVVLTLKRGRSLD 204 Query: 187 SAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG----KSLSIVQAIQHE 240 S E ++ +VA+AV L+ VTV D G+LL N + L K I + + E Sbjct: 205 SEEVDSVVDMVASAVQGLEPARVTVTDQNGRLL--NSGSQTSLAARSRKEYDIERKREQE 262 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV--YDPDSKVERSIR--------- 289 I+ L +G+ N+ + V +L+MD + E Y+PD RS Sbjct: 263 YLEKIDSILIPVVGLANYTAQV--DLSMDFSAVEETQKRYNPDLPAVRSETTFEENNIGG 320 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 L+ + T+QP V N+P V+ + + + KE NYE++T Sbjct: 321 LAVGIPGALTNQP----PVNSNIPEVAGQGGAGSATSPSRTHKEATRNYELDTTISHKRQ 376 Query: 350 DNYKLERLSIAVVVN------KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403 + R+S++V V+ + T + RS ++ L+ I +++ G + +RG Sbjct: 377 QTGVIRRISVSVAVDYIPKVGENGETTMTPRSVEE------LSNIRRLLQGGVGFDMQRG 430 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 D + + ++ F+ +V + D + V+ ALV +V L+ + L+RL Sbjct: 431 DALEVVTVPFVREATDFDISVPLWEQDWFMKIIRLVLGALVIIV---LIMAVVKPMLKRL 487 Query: 464 HNIDD 468 DD Sbjct: 488 IYPDD 492 >gi|254436608|ref|ZP_05050102.1| flagellar M-ring protein FliF [Octadecabacter antarcticus 307] gi|198252054|gb|EDY76368.1| flagellar M-ring protein FliF [Octadecabacter antarcticus 307] Length = 602 Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/177 (31%), Positives = 94/177 (53%), Gaps = 4/177 (2%) Query: 44 NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP 103 +P L+ L ++ + AL +D +I I+VP + +R+ LAAQGLP Sbjct: 37 QAPQRTTLFASLPEAEKAAVMDALRNNGMDVQIDSTTGDITVPVADYHSSRMSLAAQGLP 96 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 S + GY + + G + ++ + ++ E E+AR+I I+ I A+RVH+ +P+ + Sbjct: 97 QSMPD-GYSVLSDM-PMGTSRSVENMRLKQSQEIELARSINEINVISASRVHLAIPERSA 154 Query: 164 FRKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + PTASV ++A + AI +LV+++V NL VTV+D G+LL+ Sbjct: 155 FARNAQNPTASVFLQVQAGRSLSEQQVMAIVNLVSSSVANLPRTSVTVVDQNGRLLS 211 >gi|157376198|ref|YP_001474798.1| flagellar MS-ring protein [Shewanella sediminis HAW-EB3] gi|157318572|gb|ABV37670.1| flagellar M-ring protein FliF [Shewanella sediminis HAW-EB3] Length = 569 Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 92/430 (21%), Positives = 194/430 (45%), Gaps = 30/430 (6%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y L K+ ++ ++ L + I + I + + VP ++ L + Sbjct: 57 LWAQEPEYRPLG-KMSTQEMIQVLDVLDKNKIKYEI--DVDVVKVPEDKYQDVKLMLTRE 113 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 G+ S++S+S Y + + FG++ M++ + E +AR I+ + + A+V + +P Sbjct: 114 GVDSAASSSDY--LSQDSGFGVSQRMEQARLKHSQELNLARAIEELRNVTRAKVILAIPK 171 Query: 161 MGSFRKIGARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + ++P+A+V+I A S+ + ++I +VA+AV L+ VTV DS G+LL + Sbjct: 172 ENVFARNRSKPSATVVINARRGSLGQEEVDSIVDIVASAVQGLEPTRVTVTDSNGRLLNS 231 Query: 220 NEME--RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 + + +VQ + E + L LG +NF S V +++MD + + Sbjct: 232 GSQDAVSARARREQELVQQKESEYRNKVESILMPILGPENFTSQV--DVSMDFTSVEQTA 289 Query: 278 --YDPDSKVERS-IRLSKDAQRSETSQPESAVT----VEQNMPH--VSDRKVPLPRSLEN 328 Y+PD RS + + ++ + T A++ +E N+P ++++ S Sbjct: 290 KRYNPDLPALRSEMTVENNSNGATTGGIPGALSNQPPMEANIPQEALNNQADAESNSSSG 349 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI------D 382 + +E N+E++T +H ++ + V G + + G++ + Sbjct: 350 SSHREATRNFELDT---TISHTRQQIGVVRRVSVSVAVDFKS--GSAGEDGQVSRVPRTE 404 Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINA 442 L+ I +++ A G ++RGD I + ++ F++ + + ++ R + Sbjct: 405 QELSNIRRLLEGAVGFTTQRGDIIEVVTVPFMDQLIEDVPAPELWEQPWFWRAIKLALGG 464 Query: 443 LVFLVGTLLV 452 +V LV L V Sbjct: 465 IVILVLILAV 474 >gi|260772323|ref|ZP_05881239.1| flagellar M-ring protein FliF [Vibrio metschnikovii CIP 69.14] gi|260611462|gb|EEX36665.1| flagellar M-ring protein FliF [Vibrio metschnikovii CIP 69.14] Length = 500 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 81/363 (22%), Positives = 163/363 (44%), Gaps = 21/363 (5%) Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L + ++R+ +G++I VPS R+++ GL + ++G ++ + FG++ + Sbjct: 19 LDQQKQNYRL--DGNTILVPSKDFNSIRLNMVRSGL-HQTRHAGDDILLQDMGFGVSQRL 75 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 ++ + E ++A+ I+ + + ARV + +P F + +ASV + K Sbjct: 76 EQERLKLSRERQLAKAIEEMRQVNRARVLLALPQQSVFVRHNQEASASVSLTLRTGMNLK 135 Query: 187 SAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIE 242 E +I +VA+AVP + VTV D G+LL++ + K + + + + Sbjct: 136 QEEVDSIVDMVASAVPGMRPTRVTVTDQHGRLLSSGSQDPIATARRKEQELERRQEENLR 195 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---- 298 I+ L LG+ N+ + V EL+ + V+DP++ RS +D Sbjct: 196 NKIDSVLIPILGLGNYTAQVDIELDFSAIEQTRKVFDPNTPATRSEYTLEDYNNGNVVAG 255 Query: 299 -----TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 ++QP + ++ Q++ + D + L R + +E N+E++T Sbjct: 256 IPGALSNQPPADASIPQDIAQMKDGSI-LGRG---SVHREATRNFELDTTISHERRQTGV 311 Query: 354 LERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 + R ++AV + N+ + G+ Q +S + I ++ G N RGD + + SM Sbjct: 312 INRQTVAVAIKNRAVVNPETGQVTYQALSESEINAIRTLLIGTVGFNENRGDLLKVLSMQ 371 Query: 413 FLE 415 F E Sbjct: 372 FAE 374 >gi|183220151|ref|YP_001838147.1| flagellar MS-ring protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910271|ref|YP_001961826.1| flagellar MS-ring protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774947|gb|ABZ93248.1| Endoflagellar biosynthesis/type III secretory pathway protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778573|gb|ABZ96871.1| Flagellar M-ring FliF protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 566 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 89/347 (25%), Positives = 156/347 (44%), Gaps = 56/347 (16%) Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 +G+ELFD + F T F ++I + RAL+G I +++ ++ I A V+I +P+ G + Sbjct: 109 TGWELFD-IEKFTETQFDKDIKKYRALKGAIEKSLNTLRPIEKADVNIAIPE-GDLFESN 166 Query: 169 ARPTASVMIRAINPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--- 221 + P + +I P V K + I +LVA AVP L +V+V D GK+++ E Sbjct: 167 SYPVKASVILHFRPGVEGISKKEIKGIVNLVARAVPKLKPENVSVADPDGKIISDFEEDL 226 Query: 222 ----MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE--LNMDTQQIRE 275 +E I+ + L I + + + ++I L +LG ++ E N D + + E Sbjct: 227 EKERLELRIVQEKLRIEEEERVKRLIDIRNTLRWYLGGEDRVDITRFEYSFNWDQESLTE 286 Query: 276 -----IVYD---PDSKV-ERSI----------RLSKDAQRSETSQPESAVTVEQNMPHVS 316 +V + PD+ ER + + +K++ + P+ E N Sbjct: 287 NEVLPVVAEEDNPDTPYNERKLVDGYSLKVSSKETKESFKGRGFTPDGPAGTEPN----- 341 Query: 317 DRKVPLPRSLENTD-------KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN--KGR 367 LP ++TD K E +NYE N + +K+E++ ++VVV+ R Sbjct: 342 -----LPPGYKDTDYQKAEYSKDENINNYEFNKRVKDIKRQPWKIEKIGLSVVVDGVWER 396 Query: 368 LTEVLGRSADQGKI---DSYLAEINKIVSAATGINSRRGDTITITSM 411 G D+ I + L I K + AA G RGD I++ ++ Sbjct: 397 KEREDGLGYDRKYIPVAEPDLKLIRKNLEAAIGYTRSRGDQISVITI 443 >gi|254228436|ref|ZP_04921862.1| flagellar M-ring protein FliF [Vibrio sp. Ex25] gi|262393588|ref|YP_003285442.1| flagellar M-ring protein FliF [Vibrio sp. Ex25] gi|47080313|dbj|BAD18882.1| basal body protein [Vibrio alginolyticus] gi|151939024|gb|EDN57856.1| flagellar M-ring protein FliF [Vibrio sp. Ex25] gi|262337182|gb|ACY50977.1| flagellar M-ring protein FliF [Vibrio sp. Ex25] Length = 580 Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 87/418 (20%), Positives = 187/418 (44%), Gaps = 38/418 (9%) Query: 19 RTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76 R +L+L+ I V +MLF F+V P L E ++ + L + I++++ Sbjct: 53 RQVVLVLSISICVALIVMLF----FWVKEPEMRPLGA-YETEELIPVLDYLDQQKINYKL 107 Query: 77 SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136 +G++ISV SS ++ + G+ + ++ +G ++ + FG++ +++ + E Sbjct: 108 --DGNTISVESSEYNSIKLGMVRSGV-NQATEAGDDILLQDMGFGVSQRLEQERLKLSRE 164 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHL 194 ++A+ I+ + + ARV + +P F + +ASV + + K E +I + Sbjct: 165 RQLAQAIEEMKQVRKARVLLALPKHSVFVRHNQEASASVFLTLSTGTNLKQQEVDSIVDM 224 Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKALAAF 252 VA+AVP + +TV D G+LL++ + K + ++ + + I+ L Sbjct: 225 VASAVPGMKTSRITVTDQHGRLLSSGSQDPASAARRKEQELERSQEQALREKIDSVLLPI 284 Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------TSQPE 303 LG N+ + V +++ + +DP++ RS +D ++QP Sbjct: 285 LGYGNYTAQVDIQMDFSAVEQTRKRFDPNTPATRSEYALEDYNNGNMVAGIPGALSNQPP 344 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 + ++ Q++ + D V S+ +KE N+E++T + R +++V + Sbjct: 345 ADASIPQDVAQMKDGSVMGQGSV----RKESTRNFELDTTISHERKQTGTVARQTVSVAI 400 Query: 364 NKGRLTEVLGRSADQGKI------DSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 R + D G++ +S + I +++ G + RGD + + S+ F E Sbjct: 401 KDRRQV-----NPDTGEVTYTPMSESEINAIRQVLIGTVGFDQGRGDLLNVLSVKFAE 453 >gi|258621104|ref|ZP_05716138.1| flagellar M-ring protein [Vibrio mimicus VM573] gi|258626177|ref|ZP_05721025.1| flagellar M-ring protein [Vibrio mimicus VM603] gi|262170880|ref|ZP_06038558.1| flagellar M-ring protein FliF [Vibrio mimicus MB-451] gi|258581532|gb|EEW06433.1| flagellar M-ring protein [Vibrio mimicus VM603] gi|258586492|gb|EEW11207.1| flagellar M-ring protein [Vibrio mimicus VM573] gi|261891956|gb|EEY37942.1| flagellar M-ring protein FliF [Vibrio mimicus MB-451] Length = 579 Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 97/431 (22%), Positives = 187/431 (43%), Gaps = 36/431 (8%) Query: 8 LQFFKSGTSLGRTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 + F L R +L+L+ I V +MLF F+V P L E ++ + Sbjct: 42 MDFTVGDLDLLRQVVLVLSISICVALIVMLF----FWVREPDMRPLGA-YETEELIPVLD 96 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L + +++ +G++I VP S ++ + GL + +G E+ + FG++ Sbjct: 97 YLDQQKQQYKL--DGNTILVPVSDYNSLKLSMVRAGL-NQERQAGDEILMQDMGFGVSQR 153 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 +++ + E ++A+ I+ + I ARV + +P F + +ASV + + Sbjct: 154 LEQERLKLSRERQLAKAIEEMRQINKARVLLALPKQSVFVRQNQEASASVFLSLRTGANL 213 Query: 186 KSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME------RNILGKSLSIVQAI 237 K E A+ +VA+AVP + VTV D G+LL++ + R +A+ Sbjct: 214 KQEEIDAVVDMVASAVPGMKPSRVTVTDQHGRLLSSGSQDPVSAARRKEQELEKQQEEAL 273 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + +I+ L LG+ N+ + V EL+ + V+DP++ RS +D Sbjct: 274 RGKID----SVLIPILGLGNYTAQVDIELDFSAVEQTRKVFDPNTPATRSEYTLEDYNNG 329 Query: 298 E---------TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 ++QP + ++ Q++ + D V S+ KE N+E++T Sbjct: 330 NVVAGVPGALSNQPPADASIPQDVAQMKDGSVMGQGSVH----KEATRNFELDTTISHER 385 Query: 349 HDNYKLERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 + + R ++AV V ++ + G ++ L I +I+ G + RGD + Sbjct: 386 KQSGVVNRQTVAVAVKSRSNVNSETGEVTYTPLSEADLNSIRQILIGTVGYSENRGDLLN 445 Query: 408 ITSMDFLENQL 418 + SM F E ++ Sbjct: 446 VLSMPFAEPEV 456 >gi|261209869|ref|ZP_05924170.1| flagellar M-ring protein FliF [Vibrio sp. RC341] gi|260841055|gb|EEX67580.1| flagellar M-ring protein FliF [Vibrio sp. RC341] Length = 580 Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 103/437 (23%), Positives = 193/437 (44%), Gaps = 48/437 (10%) Query: 8 LQFFKSGTSLGRTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 + F L R +L+L+ I V +MLF F+V P L E ++ + Sbjct: 43 MDFTVGDLDLLRQVVLVLSISICVALIVMLF----FWVREPDMRPLGA-YETEELIPVLD 97 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L + +++ +G++I VP S ++ + GL + +G E+ + FG++ Sbjct: 98 YLDQQKQQYKL--DGNTILVPVSDYNSLKLSMVRAGL-NQERQAGDEILMQDMGFGVSQR 154 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 +++ + E ++A+ I+ + I ARV + +P F + +ASV + + Sbjct: 155 LEQERLKLSRERQLAKAIEEMRQINKARVLLALPKQSVFVRQNQEASASVFLSLRTGANL 214 Query: 186 KSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME------RNILGKSLSIVQAI 237 K E A+ +VA+AVP + VTV D G+LL++ + R +A+ Sbjct: 215 KQEEIDAVVDMVASAVPGMKPSRVTVTDQHGRLLSSGSQDPVSAARRKEQELEKQQEEAL 274 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + +I+ L LG+ N+ + V EL+ + V+DP++ RS +D Sbjct: 275 RGKID----SVLIPILGLGNYTAQVDIELDFSAVEQTRKVFDPNTPATRSEYTLEDYNNG 330 Query: 298 E---------TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 ++QP + ++ Q++ + D V S+ KE N+E++T Sbjct: 331 NVVAGVPGALSNQPPADASIPQDVAQMKDGSVLGQGSVH----KEATRNFELDTTISHER 386 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL----AEIN---KIVSAATGINSR 401 + + R ++AV V K R + + D G++ +Y AEIN +I+ G + Sbjct: 387 KQSGVVNRQTVAVAV-KSRSS----VNPDTGEV-TYTPLSEAEINSIRQILIGTVGYSEN 440 Query: 402 RGDTITITSMDFLENQL 418 RGD + + SM F E ++ Sbjct: 441 RGDLLNVLSMPFAEPEV 457 >gi|149184178|ref|ZP_01862496.1| flagellar M-ring protein FliF [Erythrobacter sp. SD-21] gi|148831498|gb|EDL49931.1| flagellar M-ring protein FliF [Erythrobacter sp. SD-21] Length = 517 Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 101/403 (25%), Positives = 169/403 (41%), Gaps = 53/403 (13%) Query: 34 MLFMAARFFVNSPHYDN-LYVKLEVSDVNRISV--ALSEANIDFRISDNGSSISVPSSMV 90 M +A + SP LY L D R SV L +A I + I + +++V V Sbjct: 28 MGLLALTWAALSPAPQRVLYSSL--GDAERASVVTTLDKAGISYTIDSSTGALTVGEDDV 85 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL-EGEIARTIQSISGI 149 +AR+ +A+ G ++ +G +L + G + + E R+RA E E+ TI I G+ Sbjct: 86 YRARMLVASDG-SLAAPETGSDLIASL-PMGASRTL-EGDRLRAAQERELTMTIMEIVGV 142 Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDV 207 A RVHI + F + P+AS+M+R + AI +LVA +VP L + V Sbjct: 143 EAVRVHIAKAERSVFVREDVAPSASIMVRLARGRQLTDGQVVAITNLVAGSVPGLSIDAV 202 Query: 208 TVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELN 267 V+D GKLLT R+ + + ++ ++ +++ L G F + V EL+ Sbjct: 203 KVVDQHGKLLT---QARDPHSGRIDLQAQMEAKLNSQVSQLLTPMFGAGAFTAQVQVELD 259 Query: 268 MDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLP-RSL 326 M+ YD D V +R T Q +S+ +P V P + Sbjct: 260 MNEVTSARESYDKDGTV----------RRETTQQSQSSDVTAGGIPGVLANTPPAEGEAR 309 Query: 327 ENTDKKEEQSN-------------YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373 + +Q N YE+ + + + ++ LS+AV +++ Sbjct: 310 QGAPNDTQQGNTAGGIGESSATRVYELGREVLVSNLSPGSVKYLSVAVAIDQ-------- 361 Query: 374 RSADQGKIDSYLAEINKI---VSAATGINSRRGDTITITSMDF 413 + A+INK+ V+AA G RGD +T+ F Sbjct: 362 ----AALAKASAADINKVKELVTAAVGAREDRGDKVTVVMRPF 400 >gi|269965705|ref|ZP_06179818.1| flagellar M-ring protein [Vibrio alginolyticus 40B] gi|269829773|gb|EEZ84009.1| flagellar M-ring protein [Vibrio alginolyticus 40B] Length = 580 Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 86/418 (20%), Positives = 187/418 (44%), Gaps = 38/418 (9%) Query: 19 RTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76 R +L+L+ I V +MLF F+V P L E ++ + L + I++++ Sbjct: 53 RQVVLVLSISICVALIVMLF----FWVKEPEMRPLGA-YETEELIPVLDYLDQQKINYKL 107 Query: 77 SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136 +G+++SV SS ++ + G+ + ++ +G ++ + FG++ +++ + E Sbjct: 108 --DGNTVSVESSEYNSIKLGMVRSGV-NQATEAGDDILLQDMGFGVSQRLEQERLKLSRE 164 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHL 194 ++A+ I+ + + ARV + +P F + +ASV + + K E +I + Sbjct: 165 RQLAQAIEEMKQVRKARVLLALPKHSVFVRHNQEASASVFLTLSTGTNLKQQEVDSIVDM 224 Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKALAAF 252 VA+AVP + +TV D G+LL++ + K + ++ + + I+ L Sbjct: 225 VASAVPGMKTSRITVTDQHGRLLSSGSQDPASAARRKEQELERSQEQALREKIDSVLLPI 284 Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------TSQPE 303 LG N+ + V +++ + +DP++ RS +D ++QP Sbjct: 285 LGYGNYTAQVDIQMDFSAVEQTRKRFDPNTPATRSEYALEDYNNGNMVAGIPGALSNQPP 344 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 + ++ Q++ + D V S+ +KE N+E++T + R +++V + Sbjct: 345 ADASIPQDVAQMKDGSVMGQGSV----RKESTRNFELDTTISHERKQTGTVARQTVSVAI 400 Query: 364 NKGRLTEVLGRSADQGKI------DSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 R + D G++ +S + I +++ G + RGD + + S+ F E Sbjct: 401 KDRRQV-----NPDTGEVTYTPMSESEINAIRQVLIGTVGFDQGRGDLLNVLSVKFAE 453 >gi|91223544|ref|ZP_01258809.1| flagellar M-ring protein [Vibrio alginolyticus 12G01] gi|91191630|gb|EAS77894.1| flagellar M-ring protein [Vibrio alginolyticus 12G01] Length = 580 Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 86/418 (20%), Positives = 187/418 (44%), Gaps = 38/418 (9%) Query: 19 RTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76 R +L+L+ I V +MLF F+V P L E ++ + L + I++++ Sbjct: 53 RQVVLVLSISICVALIVMLF----FWVKEPEMRPLGA-YETEELIPVLDYLDQQKINYKL 107 Query: 77 SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136 +G+++SV SS ++ + G+ + ++ +G ++ + FG++ +++ + E Sbjct: 108 --DGNTVSVESSEYNSIKLGMVRSGV-NQATEAGDDILLQDMGFGVSQRLEQERLKLSRE 164 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHL 194 ++A+ I+ + + ARV + +P F + +ASV + + K E +I + Sbjct: 165 RQLAQAIEEMKQVRKARVLLALPKHSVFVRHNQEASASVFLTLSTGTNLKQQEVDSIVDM 224 Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKALAAF 252 VA+AVP + +TV D G+LL++ + K + ++ + + I+ L Sbjct: 225 VASAVPGMKTSRITVTDQHGRLLSSGSQDPASAARRKEQELERSQEQALREKIDSVLLPI 284 Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------TSQPE 303 LG N+ + V +++ + +DP++ RS +D ++QP Sbjct: 285 LGYGNYTAQVDIQMDFSAVEQTRKRFDPNTPATRSEYALEDYNNGNMVAGIPGALSNQPP 344 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 + ++ Q++ + D V S+ +KE N+E++T + R +++V + Sbjct: 345 ADASIPQDVAQMKDGSVMGQGSV----RKESTRNFELDTTISHERKQTGTVARQTVSVAI 400 Query: 364 NKGRLTEVLGRSADQGKI------DSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 R + D G++ +S + I +++ G + RGD + + S+ F E Sbjct: 401 KDRRQV-----NPDTGEVTYTPMSESEINAIRQVLIGTVGFDQGRGDLLNVLSVKFAE 453 >gi|91792682|ref|YP_562333.1| flagellar MS-ring protein [Shewanella denitrificans OS217] gi|91714684|gb|ABE54610.1| flagellar M-ring protein FliF [Shewanella denitrificans OS217] Length = 566 Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 105/440 (23%), Positives = 196/440 (44%), Gaps = 34/440 (7%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y L K++ +++ ++ L + I + I + I VP ++ L+ Sbjct: 56 MWAQEPEYRPLG-KMDTAEMIQVLDVLDKNQIKYEIQLD--VIKVPEDQYQDIKLILSRA 112 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 G+ S+ + Y K + FG++ M++ + E +AR I+ + + A+V + +P Sbjct: 113 GIESNVDTNDY--LSKDSGFGVSQRMEQARLKHSQELNLARVIEELKSVSRAKVILALPK 170 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + ++P+A+V++ S+ + +AI +VA+AV L+ VTV DS G+LL + Sbjct: 171 ENVFARNQSQPSATVVVNVRRGSLGQEEIDAIVDIVASAVQGLEPERVTVTDSNGRLLNS 230 Query: 220 NEME--RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 + + L +VQ + E I L LG +NF S V ++ MD I + Sbjct: 231 GSQDGASARARRELELVQNQEAEYRKKIESILMPILGPENFTSEV--DVTMDFTAIEQTA 288 Query: 278 --YDPDSKVERS---IRLSKDAQR------SETSQPESAVTVEQNMPHVSDRKVPLPRSL 326 + PD RS I + + +R + ++QP +E ++P + S Sbjct: 289 KRFAPDLPALRSEMTIETNTNGERVGGIPGALSNQP----PMESDIPENAGEATESVASN 344 Query: 327 ENTDKKEEQSNYEINTKSIATTHDN---YKLERLSIAVVVNKGRLTEVLGRSADQGKIDS 383 N +E N+E++T +I+ T + +S+A+ G E G+ + + Sbjct: 345 GNV-HREATRNFELDT-TISHTRQQIGVVRRVSVSVAIDFKAGAAGED-GQVTRVARTEQ 401 Query: 384 YLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINAL 443 LA I +++ A G +++RGD + + ++ F++ L + R I A+ Sbjct: 402 ELANIRRLLEGAVGFSAQRGDMLEVVTVPFMDQLLEELPAPDLWEQPWFWRAIKLGIGAI 461 Query: 444 VFLVGTLLVTFLGLHALRRL 463 V LV L V LRRL Sbjct: 462 VILVLILAVV---RPMLRRL 478 >gi|45657269|ref|YP_001355.1| flagellar MS-ring protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600507|gb|AAS69992.1| FliF [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 566 Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 111/449 (24%), Positives = 197/449 (43%), Gaps = 53/449 (11%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 IL+ + +FF T+L T+ LIL V L ++ + L+ L D Sbjct: 8 ILNNIREFF---TTLDTTKKLILGGVALTVLIAIGILSTISLQKNRMVLFKDLTSKDFAE 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 ++ L + SD S I+V + LA + L + G+ELF+ V+ F Sbjct: 65 VTKKLDSLGYQYGSSDT-SVITVDPEQRQEIVTKLAQENLIPAGVQ-GWELFN-VDKFTE 121 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T F ++I + RAL+G I +++ ++ + A V+I P+ F + ASV++ I P Sbjct: 122 TQFDKDIKKYRALKGAIEQSLMTLRSVDKAYVNIAFPEDELFSSNSSPVKASVILHYI-P 180 Query: 183 SV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-------MERNILGKSL 231 V K + I +LV+ AVP L +V+V D+ GK+++ E +E I+ + L Sbjct: 181 GVESLSRKEVKGIVNLVSRAVPKLKPENVSVADADGKIISDFEEDLEKERLELRIVQEKL 240 Query: 232 SI--VQAIQHEIEMNINKALAAFLGVDNFRSAVVAE--LNMDTQQIRE-----IVYDPDS 282 I Q IQ I+M L LG ++ E LN D + ++ +V PD+ Sbjct: 241 RIGEEQRIQRLIDMR--NTLRWLLGGEDRVDITRFEYNLNWDKESYKDNSVSPVVAIPDN 298 Query: 283 --------------KVERSIRLSKDAQRSETSQPESAVTVEQNM-PHVSDRKVPLPRSLE 327 ++ S + +K+ + P+ E N+ P D Sbjct: 299 PNTPYSELKLVDGYSLKVSSKETKEDFKGRGFTPDGPAGTEPNIAPGYKDTDY----QKA 354 Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN--KGRLTEVLGRSADQGKI---D 382 K E +NYE N + +K+E+++++VV++ + + G D+ + + Sbjct: 355 EYSKAENINNYEFNRRVSEVQKQPWKVEKVNLSVVIDGVWEKKEKEDGTGYDRKYVPVSE 414 Query: 383 SYLAEINKIVSAATGINSRRGDTITITSM 411 L +I K + +A GI+ RGD I++ ++ Sbjct: 415 DELRQIRKNLESAVGIDKARGDQISVITI 443 >gi|24215291|ref|NP_712772.1| flagellar MS-ring protein [Leptospira interrogans serovar Lai str. 56601] gi|24196388|gb|AAN49790.1|AE011426_5 flagellar MS-ring protein [Leptospira interrogans serovar Lai str. 56601] Length = 565 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 111/449 (24%), Positives = 197/449 (43%), Gaps = 53/449 (11%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 IL+ + +FF T+L T+ LIL V L ++ + L+ L D Sbjct: 8 ILNNIREFF---TTLDTTKKLILGGVALTVLIAIGILSTISLQKNRMVLFKDLTSKDFAE 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 ++ L + SD S I+V + LA + L + G+ELF+ V+ F Sbjct: 65 VTKKLDSLGYQYGSSDT-SVITVDPEQRQEIVTKLAQENLIPAGVQ-GWELFN-VDKFTE 121 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T F ++I + RAL+G I +++ ++ + A V+I P+ F + ASV++ I P Sbjct: 122 TQFDKDIKKYRALKGAIEQSLMTLRSVDKAYVNIAFPEDELFSSNSSPVKASVILHYI-P 180 Query: 183 SV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-------MERNILGKSL 231 V K + I +LV+ AVP L +V+V D+ GK+++ E +E I+ + L Sbjct: 181 GVESLSRKEVKGIVNLVSRAVPKLKPENVSVADADGKIISDFEEDLEKERLELRIVQEKL 240 Query: 232 SI--VQAIQHEIEMNINKALAAFLGVDNFRSAVVAE--LNMDTQQIRE-----IVYDPDS 282 I Q IQ I+M L LG ++ E LN D + ++ +V PD+ Sbjct: 241 RIGEEQRIQRLIDMR--NTLRWLLGGEDRVDITRFEYNLNWDKESYKDNSVSPVVAIPDN 298 Query: 283 --------------KVERSIRLSKDAQRSETSQPESAVTVEQNM-PHVSDRKVPLPRSLE 327 ++ S + +K+ + P+ E N+ P D Sbjct: 299 PNTPYSELKLVDGYSLKVSSKETKEDFKGRGFTPDGPAGTEPNIAPGYKDTDY----QKA 354 Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN--KGRLTEVLGRSADQGKI---D 382 K E +NYE N + +K+E+++++VV++ + + G D+ + + Sbjct: 355 EYSKAENINNYEFNRRVSEVQKQPWKVEKVNLSVVIDGVWEKKEKEDGTGYDRKYVPVSE 414 Query: 383 SYLAEINKIVSAATGINSRRGDTITITSM 411 L +I K + +A GI+ RGD I++ ++ Sbjct: 415 DELRQIRKNLESAVGIDKARGDQISVITI 443 >gi|291558199|emb|CBL35316.1| flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) [Eubacterium siraeum V10Sc8a] Length = 541 Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 67/249 (26%), Positives = 123/249 (49%), Gaps = 19/249 (7%) Query: 43 VNSPHYDNLYVKLEVSDVNRISVALSEANI-DFRISDNGSSISVPSSMVGKARIHLAAQG 101 +N Y +Y L+ + +++ A++E I D ++ +GS ISVPS R+ L+ QG Sbjct: 45 LNQKGYTAIYTGLDSEESSQVVSAINELGITDVKMGTDGS-ISVPSDQADNVRMQLSIQG 103 Query: 102 LPSSSSNSGYELFDKVNS-FGL--TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 P S+ N FD NS G+ T +++ +++ L+ + + I +IS + + V I M Sbjct: 104 YPKSTFN-----FDVWNSGIGIWSTDTEKKVLQIQQLQTHLMKAINTISAVKNSYVIITM 158 Query: 159 PDMGSF--RKIGARPTASVMIRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTG 214 P+ ++ P SV + N + S E I LV ++P L+ ++++LDS G Sbjct: 159 PENSNYVISTDSEEPRVSVKLDLKNDAQLTSDQVEGIYALVLNSLPGLERENISILDSDG 218 Query: 215 KLLTANE--MERNILGKS-LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ 271 KLL+ +E ++L +S L+ + +Q ++ +N L ++ V +LN D Sbjct: 219 KLLSGENTTVEEDVLYQSRLNFQEQMQSLLKSQLNDTLKKLY--KDYTINVNVKLNYDNS 276 Query: 272 QIREIVYDP 280 + +Y P Sbjct: 277 KSEYTIYTP 285 >gi|167750730|ref|ZP_02422857.1| hypothetical protein EUBSIR_01708 [Eubacterium siraeum DSM 15702] gi|167656409|gb|EDS00539.1| hypothetical protein EUBSIR_01708 [Eubacterium siraeum DSM 15702] Length = 542 Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 67/249 (26%), Positives = 123/249 (49%), Gaps = 19/249 (7%) Query: 43 VNSPHYDNLYVKLEVSDVNRISVALSEANI-DFRISDNGSSISVPSSMVGKARIHLAAQG 101 +N Y +Y L+ + +++ A++E I D ++ +GS ISVPS R+ L+ QG Sbjct: 45 LNQKGYTAIYTGLDSEESSQVVSAINELGITDVKMGTDGS-ISVPSDQADNVRMQLSIQG 103 Query: 102 LPSSSSNSGYELFDKVNS-FGL--TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 P S+ N FD NS G+ T +++ +++ L+ + + I +IS + + V I M Sbjct: 104 YPKSTFN-----FDVWNSGIGIWSTDTEKKVLQIQQLQTHLMKAINTISAVKNSYVIITM 158 Query: 159 PDMGSF--RKIGARPTASVMIRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTG 214 P+ ++ P SV + N + S E I LV ++P L+ ++++LDS G Sbjct: 159 PENSNYVISTDSEEPRVSVKLDLKNGAQLTSDQVEGIYALVLNSLPGLERENISILDSDG 218 Query: 215 KLLTANE--MERNILGKS-LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ 271 KLL+ +E ++L +S L+ + +Q ++ +N L ++ V +LN D Sbjct: 219 KLLSGENTTVEEDVLYQSRLNFQEQMQSLLKSQLNDTLKKLY--KDYTINVNVKLNYDNS 276 Query: 272 QIREIVYDP 280 + +Y P Sbjct: 277 KSEYTIYTP 285 >gi|116514986|ref|YP_802615.1| hypothetical protein BCc_043 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116256840|gb|ABJ90522.1| flagellar basal-body MS-ring and collar protein [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 489 Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 92/381 (24%), Positives = 158/381 (41%), Gaps = 62/381 (16%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 HY LY L D I L +I +R +++ ++ VP + + L Sbjct: 51 HYVVLYNNLSQEDSKWIISRLKILHIPYRCNNSFKTLLVPEDKINILNLSLLKNNN-ILK 109 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 N G+EL DK FG++ F + I R LEGE+++T++ I I ARVH+V F + Sbjct: 110 KNFGFELLDK-EKFGISQFHEHINYHRGLEGELSKTLEQIFPIQCARVHLVCKKDTDFFE 168 Query: 167 IGARPTASVMIRAINPSV---YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME 223 P+ASV+I P++ Y+ AI L++ +VP+L ++ ++D G +L ++ Sbjct: 169 NNQIPSASVIITLF-PNMHLTYEQINAIILLISGSVPDLSSDNIVLVDQFGNILNKYDLN 227 Query: 224 RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP--D 281 F ++ + E +Q+I++I+ P D Sbjct: 228 H-------------------------TKFFNNSQYKKITILE-EYYSQRIKDILL-PILD 260 Query: 282 SK---VERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNY 338 SK V+ + +L KD S S V + + +S N+ Sbjct: 261 SKDFVVQVTTKLKKDNHASTFSDKNYNVNQKIDNSFIS-------------------PNF 301 Query: 339 -EINTKSIA-TTHDNYKLERLSIAVVVNKGRLTEV--LGRSADQGKIDSYLAEINKIVSA 394 E+N K+I T NYK V ++K L + L +S + L I +V + Sbjct: 302 KELNIKNIKITVLINYKKNNSGKMVPLSKNELNNIENLVKSVINLSKNK-LNNIENLVKS 360 Query: 395 ATGINSRRGDTITITSMDFLE 415 ++ +GD I + + FL+ Sbjct: 361 VINLSKNKGDRINLINYMFLD 381 >gi|59712459|ref|YP_205235.1| flagellar MS-ring protein [Vibrio fischeri ES114] gi|59480560|gb|AAW86347.1| flagellar M ring protein FliF [Vibrio fischeri ES114] Length = 577 Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 93/418 (22%), Positives = 184/418 (44%), Gaps = 42/418 (10%) Query: 19 RTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76 R IL+L+ I V +MLF F+V P L V E ++ ++ L ++++ Sbjct: 54 RQVILVLSVSICVALIVMLF----FWVQEPEMRPLGV-YETDELIQVLDHLDAQKAEYKL 108 Query: 77 SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136 +G++I VP+S K + L+ GL + + G ++ + FG++ +++ + E Sbjct: 109 --DGNTILVPASEFSKMNLDLSRAGL-NKAVGEGDDILLQDMGFGVSQRLEQERLKLSRE 165 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHL 194 ++A T + + I A+V + MP F + +A+V + ++ K E +I + Sbjct: 166 RQLASTFEQMRPIRKAQVLLAMPKQSVFVRHNQEASATVFLTMRMGAMLKQEEVDSIVDM 225 Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKALAAF 252 VA+AVP + VTV D G+LL++ + + K + + + + I+ L Sbjct: 226 VASAVPGMKPTRVTVTDQHGRLLSSGTQDPMAMAHRKEQELERKQEQSLRDKIDAILIPI 285 Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------TSQPE 303 LG+ N+ + V ++ + +DP + RS +D ++QP Sbjct: 286 LGLGNYTAQVDVSMDFSAVEQTRKQFDPQTPSTRSEYTLEDYNNGNVIAGVPGALSNQPP 345 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 + Q++ + D V S+ KE N+E++T + R +++V V Sbjct: 346 VDSAIPQDIAELKDGSVLGQGSVH----KEATRNFELDTTISHERKQTGTVARQTVSVAV 401 Query: 364 NK--------GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 + G +T +A+ L +I +I+ + G+N +RGD + + S+ F Sbjct: 402 KERQSVNPETGEVTYTPISAAE-------LDKIRQIIIGSVGLNEQRGDLLNVLSVKF 452 >gi|197334317|ref|YP_002156678.1| flagellar M-ring protein FliF [Vibrio fischeri MJ11] gi|197315807|gb|ACH65254.1| flagellar M-ring protein FliF [Vibrio fischeri MJ11] Length = 577 Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 92/418 (22%), Positives = 184/418 (44%), Gaps = 42/418 (10%) Query: 19 RTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76 R IL+L+ I V +MLF F+V P L V E ++ ++ L ++++ Sbjct: 54 RQVILVLSVSICVALIVMLF----FWVQEPEMRPLGV-YETDELIQVLDHLDAQKAEYKL 108 Query: 77 SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136 +G++I VP+S K + L+ GL + + G ++ + FG++ +++ + E Sbjct: 109 --DGNTILVPASEFSKMNLDLSRAGL-NKAVGEGDDILLQDMGFGVSQRLEQERLKLSRE 165 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHL 194 ++A T + + I A+V + MP F + +A+V + ++ K E +I + Sbjct: 166 RQLASTFEQMRPIRKAQVLLAMPKQSVFVRHNQEASATVFLTMRMGAMLKQEEVDSIVDM 225 Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKALAAF 252 VA+AVP + VTV D G+LL++ + + K + + + + I+ L Sbjct: 226 VASAVPGMKPTRVTVTDQHGRLLSSGTQDPMAMAHRKEQELERKQEQSLRDKIDAILIPI 285 Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------TSQPE 303 LG+ N+ + V ++ + +DP + RS +D ++QP Sbjct: 286 LGLGNYTAQVDVSMDFSAVEQTRKQFDPQTPSTRSEYTLEDYNNGNVIAGVPGALSNQPP 345 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 + Q++ + D V S+ KE N+E++T + R +++V + Sbjct: 346 VDSAIPQDIAELKDGSVLGQGSVH----KEATRNFELDTTISHERKQTGTVARQTVSVAI 401 Query: 364 NK--------GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 + G +T +A+ L +I +I+ + G+N +RGD + + S+ F Sbjct: 402 KERQSVNPETGEVTYTPISAAE-------LDKIRQIIIGSVGLNEQRGDLLNVLSVKF 452 >gi|291532064|emb|CBK97649.1| flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) [Eubacterium siraeum 70/3] Length = 542 Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 67/249 (26%), Positives = 123/249 (49%), Gaps = 19/249 (7%) Query: 43 VNSPHYDNLYVKLEVSDVNRISVALSEANI-DFRISDNGSSISVPSSMVGKARIHLAAQG 101 +N Y +Y L+ + +++ A++E I D ++ +GS ISVPS R+ L+ QG Sbjct: 45 LNQKGYTAIYTGLDSEESSQVVSAINELGITDVKMGTDGS-ISVPSDQADNVRMQLSIQG 103 Query: 102 LPSSSSNSGYELFDKVNS-FGL--TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 P S+ N FD NS G+ T +++ +++ L+ + + I +IS + + V I M Sbjct: 104 YPKSTFN-----FDVWNSGIGIWSTDTEKKVLQIQQLQTHLMKAINTISAVKNSYVIITM 158 Query: 159 PDMGSF--RKIGARPTASVMIRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTG 214 P+ ++ P SV + N + S E I LV ++P L+ ++++LDS G Sbjct: 159 PENSNYVISTDSEEPRVSVKLDLKNGAQLTSDQVEGIYALVLNSLPGLERENISILDSDG 218 Query: 215 KLLTANE--MERNILGKS-LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ 271 KLL+ +E ++L +S L+ + +Q ++ +N L ++ V +LN D Sbjct: 219 KLLSGENTTVEEDVLYQSRLNFQEQMQSLLKSQLNDTLKKLY--KDYTINVNVKLNYDNS 276 Query: 272 QIREIVYDP 280 + +Y P Sbjct: 277 KSEYPIYTP 285 >gi|28899023|ref|NP_798628.1| flagellar MS-ring protein [Vibrio parahaemolyticus RIMD 2210633] gi|153836977|ref|ZP_01989644.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AQ3810] gi|260365231|ref|ZP_05777788.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus K5030] gi|260878781|ref|ZP_05891136.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AN-5034] gi|260897376|ref|ZP_05905872.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus Peru-466] gi|260899935|ref|ZP_05908330.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AQ4037] gi|4322017|gb|AAD15920.1| polar flagellar M-ring protein FliF [Vibrio parahaemolyticus] gi|28807242|dbj|BAC60512.1| polar flagellar M-ring protein FliF [Vibrio parahaemolyticus RIMD 2210633] gi|149749750|gb|EDM60495.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AQ3810] gi|308088295|gb|EFO37990.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus Peru-466] gi|308094213|gb|EFO43908.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AN-5034] gi|308107383|gb|EFO44923.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AQ4037] gi|308115404|gb|EFO52944.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus K5030] gi|328474440|gb|EGF45245.1| flagellar MS-ring protein [Vibrio parahaemolyticus 10329] Length = 580 Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 86/417 (20%), Positives = 187/417 (44%), Gaps = 36/417 (8%) Query: 19 RTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76 R +L+L+ I V +MLF F+V P L + ++ + L + I++++ Sbjct: 53 RQVVLVLSISICVALIVMLF----FWVKEPEMRPLGA-YDTEELIPVLDYLDQQKINYKL 107 Query: 77 SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136 +G+++SV SS ++ + G+ + ++ +G ++ + FG++ +++ + E Sbjct: 108 --DGNTVSVESSEYNSIKLGMVRSGV-NQATEAGDDILLQDMGFGVSQRLEQERLKLSRE 164 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHL 194 ++A+ I+ + + ARV + +P F + +ASV + + K E +I + Sbjct: 165 RQLAQAIEEMKQVRKARVLLALPKHSVFVRHNQEASASVFLTLSTGANLKQQEVDSIVDM 224 Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKALAAF 252 VA+AVP + +TV D G+LL++ + K + ++ + + I+ L Sbjct: 225 VASAVPGMKTSRITVTDQHGRLLSSGSQDPASAARRKEQELERSQEQALREKIDSVLLPI 284 Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------TSQPE 303 LG N+ + V +++ + +DP++ RS +D ++QP Sbjct: 285 LGFGNYTAQVDIQMDFSAVEQTRKRFDPNTPSTRSEYALEDYNNGNMVAGIPGALSNQPP 344 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 + ++ Q++ + D V S+ +KE N+E++T + R +++V + Sbjct: 345 ADASIPQDVAQMKDGSVMGQGSV----RKESTRNFELDTTISHERKQTGTVARQTVSVAI 400 Query: 364 NKGR-----LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 R EV +G+I++ I +++ G + RGD + + S+ F E Sbjct: 401 KDRRQVNPDTGEVTYTPMSEGEINA----IRQVLIGTVGFDQSRGDLLNVLSVKFAE 453 >gi|158320512|ref|YP_001513019.1| flagellar M-ring protein FliF [Alkaliphilus oremlandii OhILAs] gi|158140711|gb|ABW19023.1| flagellar M-ring protein FliF [Alkaliphilus oremlandii OhILAs] Length = 515 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 98/425 (23%), Positives = 188/425 (44%), Gaps = 52/425 (12%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 I +QL ++F+ + + + ++LAS + ++ ++ + P Y LY L Sbjct: 8 IRNQLNEYFQG---MDKKKKIMLASGTIFILLALTGIIYYFSRPEYVELYSNLRPEQTGE 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L+E NI + I VP +A++ +A +GLPS+ + +E NSF + Sbjct: 65 IIERLTENNIKAKFGQTSGIILVPKEDQKRAQVVVATEGLPSAKFS--FEDVFSGNSFMM 122 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMIRAI 180 TS + V AL+ +A I+ I+G+ +A V +V+P+ F + ASV + Sbjct: 123 TSEEKSKQYVYALQNYLASIIEEINGVKSANVALVVPENSGFILKNNNNLAKASVRLDLQ 182 Query: 181 NPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS---LSIVQ 235 ++ S I LV+ AV L +VT+ S G++L + E + + S L++ Q Sbjct: 183 GNAILDKNSINGIAILVSNAVEGLSPENVTIHGSDGRVLNTDSDEDSDVFASNNNLALQQ 242 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ--QIREI---VYDPDSKVERSIR- 289 +++ ++E +I L+ G N +L+ D++ +I+E + + + RS++ Sbjct: 243 SVKEKLEESITNFLSNVYGYGNIVVMANVKLDFDSEVTEIKEFAPPIEGETTGIPRSLQE 302 Query: 290 LSKDA-------------QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQS 336 LSK++ + + P V ++ S+ R++ Sbjct: 303 LSKESVNGGTGGAPGTPTNADDDTDPAQYVVGDEEYSTYSEAS----RTI---------- 348 Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT 396 NYEIN +++ +++AV VN L AD ++ I+SAA Sbjct: 349 NYEINELYKKIVKAQGQVKDITVAVFVNSAAL-------ADGDLTAEQRTDLANIISAAA 401 Query: 397 GINSR 401 G++++ Sbjct: 402 GLDTK 406 >gi|150388445|ref|YP_001318494.1| flagellar M-ring protein FliF [Alkaliphilus metalliredigens QYMF] gi|149948307|gb|ABR46835.1| flagellar M-ring protein FliF [Alkaliphilus metalliredigens QYMF] Length = 517 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 101/414 (24%), Positives = 191/414 (46%), Gaps = 33/414 (7%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 I +QL ++ + + +I + A IL+ + + +F + P Y LY L + Sbjct: 8 IRNQLNEYIQGLDKNKKIKIGLSALFILISLTGII---YFFSRPDYVVLYNNLNPEESGS 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + L +NI D +I V +A++ +A QGLP++ + YE NS+ + Sbjct: 65 VMETLQGSNIRADFGDTSGTILVRKQDEKRAQVVVATQGLPTARFS--YEDAFSGNSWMM 122 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI--GARPTASVMIRAI 180 TS + + A + +A T++ I G+ A V++ +P+ F A ASV + Sbjct: 123 TSEERAQRILIAQQNYLASTMEEIPGVSKAVVNLTIPERTGFMMADNNANAKASVWLDIS 182 Query: 181 NPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKS--LSIVQ 235 + + +S + I LV+ AV L+ +VT+ G++L + ++LG S +++ Q Sbjct: 183 SNANLESGSIKGIAILVSNAVQGLEPENVTIHGPDGRVLNQEAGSDSSLLGASDQMNLQQ 242 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 A+Q ++E +I L++ G N L D+ + + P + + + + + Sbjct: 243 AVQKDLEKSITDFLSSVYGHGNVVVMAGVRLGFDSNVTELVEFAPPIEGQETGIIRSMHE 302 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT------DKKEEQSNYEINT--KSIAT 347 + T+ + P+V D +P+++E+ D+ + NYEIN + I Sbjct: 303 LTHTAIDGPGGGIPGVDPNVGD----IPQNVEDDEYLSRYDEASQTINYEINELRQKIVK 358 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR 401 H ++ +S+AV VNK L + G +DQ + E+ IVSAA G+++R Sbjct: 359 AHG--QVHDISVAVYVNKSTLAD--GDLSDQER-----RELINIVSAAAGLDTR 403 >gi|254706489|ref|ZP_05168317.1| flagellar MS-ring protein [Brucella pinnipedialis M163/99/10] Length = 207 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 84/177 (47%), Gaps = 17/177 (9%) Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440 +D + +I +V+ A G+N+ RGD I +T+++FL+ + V + D L R + Sbjct: 16 VDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGADMEPVSAPWTDTLLRQSGSYA 75 Query: 441 NALVFLVGTLLVTFLGLHALRRLHNIDDA-------KKGEVGGKSILSPPPISSAVTTGL 493 NAL L L+ + GL L R N+ A + GEV +P I A + G Sbjct: 76 NALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAGEVA-----TPNFIGGAESVGE 130 Query: 494 MPNDNIALDSSNQDIFSHS-RNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549 I ++ D S +L+ R+ + LRL MIE++EER A +L++W Sbjct: 131 GVQAVIGGPAAYADQMKTSLSDLRQRMR----MPAKLRLEQMIEMDEERVAAVLKQW 183 >gi|150390487|ref|YP_001320536.1| flagellar M-ring protein FliF [Alkaliphilus metalliredigens QYMF] gi|149950349|gb|ABR48877.1| flagellar M-ring protein FliF [Alkaliphilus metalliredigens QYMF] Length = 517 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 99/412 (24%), Positives = 189/412 (45%), Gaps = 29/412 (7%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 I +QL ++ + + +I + A IL+ + + +F + P Y LY L + Sbjct: 8 IRNQLNEYVQGLDKNKKIKIGLSALFILISLTGII---YFFSRPDYVVLYNNLNPEESGS 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + L +NI D +I V +A++ +A QGLP++ + YE NS+ + Sbjct: 65 VMETLQGSNIRADFGDTSGTILVRKQDEKRAQVVVATQGLPTARFS--YEDAFSGNSWMM 122 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI--GARPTASVMIRAI 180 TS + + A + +A T++ I G+ A V++ +P+ F A ASV + Sbjct: 123 TSEERAQRILIAQQNYLASTMEEIPGVSKAVVNLTIPERTGFMMADNNANAKASVWLDIS 182 Query: 181 NPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKS--LSIVQ 235 + + +S + I LV+ AV L+ +VT+ G++L + ++LG S +++ Q Sbjct: 183 SNANLESGSIKGIAILVSNAVQGLEPENVTIHGPDGRVLNQEAGSDSSLLGASDQMNLQQ 242 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 A+Q ++E +I L++ G N L D+ + + P + + + + + Sbjct: 243 AVQKDLEKSITDFLSSVYGHGNVVVMAGVRLGFDSNVTELVEFAPPIEGQETGIIRSMHE 302 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT------DKKEEQSNYEINTKSIATTH 349 + T+ + P+V D +P+++E+ D+ + NYEIN Sbjct: 303 LTHTAIDGPGGGIPGVDPNVGD----IPQNVEDDEYLSRYDEASQTINYEINELRQKIVR 358 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR 401 + ++ +S+AV VNK L + G +DQ + E+ IVSAA G+++R Sbjct: 359 AHGQVHDISVAVYVNKSTLAD--GDLSDQER-----RELINIVSAAAGLDTR 403 >gi|90579927|ref|ZP_01235735.1| flagellar M-ring protein [Vibrio angustum S14] gi|90438812|gb|EAS63995.1| flagellar M-ring protein [Vibrio angustum S14] Length = 582 Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 92/420 (21%), Positives = 187/420 (44%), Gaps = 34/420 (8%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 R IL+L+ I V +++ + ++ P L E ++ I + I++++ Sbjct: 52 RQVILVLSVAICVALIVLVT--MWIKEPEMRPLGT-YETEELIPILDHFDQKKIEYQL-- 106 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 +G++I VP+ ++ L GL ++ + G ++ + FG++ M+ + E + Sbjct: 107 DGNTIRVPADEYSAIKLDLTRTGL-NAQTAEGDDILLQDMGFGVSQRMESERLKLSRERQ 165 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVA 196 +AR I+ IS + A+V + P F + TA+V + + E +I +VA Sbjct: 166 LARAIEQISQVRKAQVLLATPKQSVFVRHNQEATATVFLTLSSGGSLGQQEVDSIVDMVA 225 Query: 197 AAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKALAAFLG 254 AVP L VTV D G+LL++ + + K + + + + I+ L LG Sbjct: 226 TAVPGLRPTRVTVTDQHGRLLSSGTEDPSTTAKRKEYELERKQEQALREKIDAILMPVLG 285 Query: 255 VDNFRSAVVAELNMDTQQIREI--VYDPDSKVERSIRLSKDAQRSE---------TSQPE 303 + N+ S V ++ MD + E YDP + RS +D ++QP Sbjct: 286 LGNYTSQV--DVAMDFSALEETRKRYDPSTAATRSEFTLEDINGGNQVAGIPGALSNQPP 343 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 + QN+ + + + +E NYE++T ++R +++V V Sbjct: 344 VESAIPQNVKDMQSGT----NGSDGSVHRESTRNYELDTTISHKRAQTGVIDRQTVSVAV 399 Query: 364 NKGRLTEVLGRSADQGKI---DSYLAEINKIVSAATGINSRRGDTITITSMDFL--ENQL 418 + +T+ ++ D ++ ++ +A+I +++ G + RGD + + S+ F+ E+QL Sbjct: 400 DYKTITDP--KTGDVTRVPVSEAEIAKIRRLLMGGIGFSEARGDLLEVLSVPFVLPESQL 457 >gi|261313943|ref|ZP_05953140.1| flagellar MS-ring protein FliF [Brucella pinnipedialis M163/99/10] gi|261302969|gb|EEY06466.1| flagellar MS-ring protein FliF [Brucella pinnipedialis M163/99/10] Length = 192 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 84/177 (47%), Gaps = 17/177 (9%) Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440 +D + +I +V+ A G+N+ RGD I +T+++FL+ + V + D L R + Sbjct: 1 MDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGADMEPVSAPWTDTLLRQSGSYA 60 Query: 441 NALVFLVGTLLVTFLGLHALRRLHNIDDA-------KKGEVGGKSILSPPPISSAVTTGL 493 NAL L L+ + GL L R N+ A + GEV +P I A + G Sbjct: 61 NALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAGEVA-----TPNFIGGAESVGE 115 Query: 494 MPNDNIALDSSNQDIFSHS-RNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549 I ++ D S +L+ R+ + LRL MIE++EER A +L++W Sbjct: 116 GVQAVIGGPAAYADQMKTSLSDLRQRMR----MPAKLRLEQMIEMDEERVAAVLKQW 168 >gi|262166236|ref|ZP_06033973.1| flagellar M-ring protein FliF [Vibrio mimicus VM223] gi|262025952|gb|EEY44620.1| flagellar M-ring protein FliF [Vibrio mimicus VM223] Length = 510 Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 80/358 (22%), Positives = 158/358 (44%), Gaps = 27/358 (7%) Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 +G++I VP S ++ + GL + +G E+ + FG++ +++ + E + Sbjct: 39 DGNTILVPVSDYNSLKLSMVRAGL-NQERQAGDEILMQDMGFGVSQRLEQERLKLSRERQ 97 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVA 196 +A+ I+ + I ARV + +P F + +ASV + + K E A+ +VA Sbjct: 98 LAKAIEEMRQINKARVLLALPKQSVFVRQNQEASASVFLSLRTGANLKQEEIDAVVDMVA 157 Query: 197 AAVPNLDMGDVTVLDSTGKLLTANEME------RNILGKSLSIVQAIQHEIEMNINKALA 250 +AVP + VTV D G+LL++ + R +A++ + I+ L Sbjct: 158 SAVPGMKPSRVTVTDQHGRLLSSGSQDPVSAARRKEQELEKQQEEALRGK----IDSVLI 213 Query: 251 AFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------TSQ 301 LG+ N+ + V EL+ + V+DP++ RS +D ++Q Sbjct: 214 PILGLGNYTAQVDIELDFSAVEQTRKVFDPNTPATRSEYTLEDYNNGNVVAGVPGALSNQ 273 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 P + ++ Q++ + D V + + KE N+E++T + + R ++AV Sbjct: 274 PPADASIPQDVAQMKDGSV----MGQGSVHKEATRNFELDTTISHERKQSGVVNRQTVAV 329 Query: 362 VV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 V ++ + G ++ L I +I+ G + RGD + + SM F E ++ Sbjct: 330 AVKSRSNVNSETGEVTYTPLSEADLNSIRQILIGTVGYSENRGDLLNVLSMPFAEPEV 387 >gi|88800453|ref|ZP_01116017.1| flagellar M-ring protein FliF [Reinekea sp. MED297] gi|88776783|gb|EAR07994.1| flagellar M-ring protein FliF [Reinekea sp. MED297] Length = 268 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 1/117 (0%) Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 D + L NIDF I + + V + + +AR+ +A GL S GYEL D+ Sbjct: 103 DARELIEVLQANNIDFDIDPSSGVLLVRQNDLHQARLAVAGAGL-SDDQTVGYELLDQDQ 161 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 G + FM+ +R+LEGE+ARTI SI+ + ARVH+ +P+ F + TASV Sbjct: 162 PLGQSQFMENARYLRSLEGELARTISSINQVKTARVHLAIPERSVFVRDRRETTASV 218 >gi|226313070|ref|YP_002772964.1| flagellar M-ring protein [Brevibacillus brevis NBRC 100599] gi|226096018|dbj|BAH44460.1| probable flagellar M-ring protein [Brevibacillus brevis NBRC 100599] Length = 220 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 54/200 (27%), Positives = 103/200 (51%), Gaps = 16/200 (8%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLY-VKLEVSDVNRISVALSEANIDFRIS 77 + IL ++ +L+ + L++ + + P Y LY KL ++ I L + I ++I+ Sbjct: 24 KWMILGISLFLLISLGLYI---YIASQPVYKPLYNQKLSEQEIGTIKQELEASQIPYQIT 80 Query: 78 DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137 NG+SI VP M + LAAQG+PS + + E+F ++ G+T ++ + AL+ Sbjct: 81 GNGTSIEVPEKMAQDVIVDLAAQGIPSQAGINA-EIFS--STLGVTDRQFDVMKKEALQQ 137 Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARP---TASVMIRAINPSV---YKSAEAI 191 E+ + ++ + G+ +A+V I +P + + P TASV++ + P K ++ Sbjct: 138 ELRKMLERVKGVRSAQVMITLPQESVW--VTETPDTATASVIVD-VEPGTTLDQKQINSL 194 Query: 192 RHLVAAAVPNLDMGDVTVLD 211 LV+ +VP L M + + D Sbjct: 195 YLLVSRSVPKLPMEAIAITD 214 >gi|119775432|ref|YP_928172.1| flagellar MS-ring protein [Shewanella amazonensis SB2B] gi|119767932|gb|ABM00503.1| flagellar M-ring protein FliF [Shewanella amazonensis SB2B] Length = 565 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 91/397 (22%), Positives = 182/397 (45%), Gaps = 40/397 (10%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y L K E ++ ++ L + I +++ + + VP R+ L+ Sbjct: 55 MWAQEPEYRPLG-KFEAQEMIQVLDVLDKNKIPYQV--DFDVLRVPEDKYQDIRLLLSRN 111 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 G+ ++S + + + FG++ +++ + E +ARTI+ + + A+V + +P Sbjct: 112 GV-DAASTTNQDFLSQDMGFGVSQRLEQARLKHSQEQNLARTIEELKSVSRAKVILALPK 170 Query: 161 MGSFRKIGARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + ++ +A+V++ + + + +AI +VA+AV L+ VTV DS G+LL + Sbjct: 171 ENVFARNQSKASATVVVTSRRGGLGQEEVDAIVDIVASAVQGLEPTRVTVTDSNGRLLNS 230 Query: 220 NEME--RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 + + L +V+ + E ++ L LG +N+ S V ++ MD + + Sbjct: 231 GSQDGASARARRELELVKQKEAEYRAKVDAILMPILGPENYTSQV--DVTMDFTAVEQT- 287 Query: 278 YDPDSKVERSIRLSKD--AQRSETSQPESAVTVEQNM--PHVSDRKVPL----PRSL-EN 328 S R + D A RSE + E+ + E NM P + P+ P++L E Sbjct: 288 ---------SKRFNPDLPAVRSEMTL-ETQTSGEANMGIPGALSNQPPMESNIPQTLQEA 337 Query: 329 TDK--------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTE--VLGRSADQ 378 DK +E NYE++T +I+ T + R V + E G+ Sbjct: 338 QDKAQANGNSHREATRNYELDT-TISHTRQQIGVVRRVSVSVAVDYKTGEANTEGQVNRV 396 Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 + ++ LA I +++ A G + +RGD+I + ++ F++ Sbjct: 397 ARTEAELANIRRLLEGAVGFSGQRGDSIEVVTVPFMD 433 >gi|307718598|ref|YP_003874130.1| flagellar M-ring protein [Spirochaeta thermophila DSM 6192] gi|306532323|gb|ADN01857.1| flagellar M-ring protein [Spirochaeta thermophila DSM 6192] Length = 569 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 97/397 (24%), Positives = 171/397 (43%), Gaps = 58/397 (14%) Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I+ L E N+ ++++ + + + R L + L ++ +ELFD + + + Sbjct: 67 ITTRLEEENVPYQVTADNRILVSDEKTARRMRAILVREDLVPRGTDP-WELFD-IERWTI 124 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T F + + RA+ + ++++ I A V +V+P+ F + P+AS++I P Sbjct: 125 TDFERNVNLRRAITRTVEEHLKALDDIDDASVTLVLPEKALFAEDQEPPSASIII-VPKP 183 Query: 183 -----SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MER----NILGKSLS 232 S K E I LV AV LD ++T+ D G +L E ME+ + + L Sbjct: 184 GSDITSNRKKIEGIVKLVQFAVEGLDPENITITDQRGVVLNDFEGMEQFDRLELARRQLK 243 Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVV---AELNMDTQQIR-----EIVYDPD--- 281 Q +++E + I ALA D R +V EL+M +++ I PD Sbjct: 244 TKQELENEYKKRILSALATVFRPD--RVEIVNLDIELDMSDVEVKTEEHFPITMKPDNPR 301 Query: 282 -----SKVERSIRLSKDAQRSETS----QPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332 S+V SI LSK+ Q + PE E P P + LE K Sbjct: 302 TPYDESEVVPSITLSKEIQDEKFEGTGFNPEGPPGQEGQTP-------PAYKDLEGLVGK 354 Query: 333 EEQS----NYEINTKSIATTHDNYKLERLSIAVVVN---------KGRLTEVLGRSADQG 379 ++ N +NT++I D ++++R+S+AV ++ KG + S + Sbjct: 355 YSRNSVIQNEVVNTRNITERKDPWEIKRISVAVALDGVWKWEYNEKGEVVFNPDGSIKRT 414 Query: 380 KI---DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 + D + + +++ AA G RGD IT+ + F Sbjct: 415 YLPVSDEDIRKAEELIKAAVGYKRERGDLITVQHIQF 451 >gi|313624697|gb|EFR94654.1| flagellar M-ring protein FliF [Listeria innocua FSL J1-023] Length = 549 Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 93/412 (22%), Positives = 182/412 (44%), Gaps = 55/412 (13%) Query: 42 FVNSPHYD-NLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++N+P + LY L + +++ L++ +D+ + +G+ I V + R A Sbjct: 33 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91 Query: 101 GLPSSSSNSGYELFDKVNSFGLTS---FMQEITRVRA-LEGEIARTIQSISGIV-AARVH 155 G+P + + L + +S G + MQE + LE EI +QS V +A V Sbjct: 92 GIPYTGQDGNDILLN--SSLGASEEDKKMQEKVGTKVNLEKEI---VQSYGTTVDSASVQ 146 Query: 156 IVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDS 212 + +P+ S F + + TA+V ++ N + I+ V+AAVPN+ DV ++D+ Sbjct: 147 LTLPESSSIFEEASQKGTAAVTLKTKNNQTLTKEQVLGIQRTVSAAVPNVASDDVAIIDT 206 Query: 213 TGKLL----TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM 268 ++ T+ E + + I AI ++ +I L++ +DNFR +N Sbjct: 207 KNGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVTVNF 266 Query: 269 DTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE 327 D + Y D KV + + S D + T+Q ES ++P+ +++ + Sbjct: 267 DEIKQNTEHYPNDGKVRSNQKDTSTDTSKGSTNQTESGTASNADVPNYTEQNGDDTNTY- 325 Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE 387 ++K E +NYE+++ +I + L + ++ V V++ +S ++ +D +AE Sbjct: 326 TSEKSSETTNYELDS-TIQEIKKHPALAKTNVVVWVDQ--------QSLNKNGVD--MAE 374 Query: 388 INKIVSAATGINS----------------------RRGDTITITSMDFLENQ 417 K + + G+ + GD +TI + FL+NQ Sbjct: 375 FTKAIGVSAGLTPNMTTEEAGEGGEAATPTFEGTFQNGD-VTIMPIQFLDNQ 425 >gi|253573518|ref|ZP_04850861.1| flagellar M-ring protein FliF [Paenibacillus sp. oral taxon 786 str. D14] gi|251847046|gb|EES75051.1| flagellar M-ring protein FliF [Paenibacillus sp. oral taxon 786 str. D14] Length = 527 Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 92/351 (26%), Positives = 166/351 (47%), Gaps = 37/351 (10%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 Y+ + L+ +D I L I +++ +G++ISVPS + ++ + +QG+ + Sbjct: 49 EYEVAFTGLDSTDAAGIINYLESGGISYKLGPDGTTISVPSKDAARVKVDVGSQGIVQNG 108 Query: 107 SNSGYELFDKVNSF-GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 S G E F++ +S G+T + A+ GE+ + ++ + G+ A+V I +P F Sbjct: 109 S-IGLEAFNESSSLIGMTDNEFNVKYKNAINGEVEQLLKRMQGVNDAKVLINLPAENVFA 167 Query: 166 KIG--ARPTASVMIRAINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLLTAN 220 + TAS+++ P + EAI +LV +VPNL + ++++ S +L + Sbjct: 168 SPDEQEKATASIVL-TFKPGYRPNQEAIDGYFNLVKTSVPNLPVENISLSSSDDTILLPS 226 Query: 221 EMERNILGKSLSIVQ---AIQHEIEMNINKALAAFL----GVDNFRSAVVAELNMDTQQI 273 + G S VQ A+Q + E ++ +++ FL G D V ++LN D Sbjct: 227 -GQGGTTGSLTSAVQENMALQKKFESDVRQSVKQFLSRLTGPDKIEVLVASKLNFDQVSQ 285 Query: 274 REIVYDP-DSKVERSIRLS-KDAQRSET--SQPESAV--TVEQNMPHVSDRKVPLPRSLE 327 ++ + P D++ + I +S + Q+S T + P S V T E+++ V P S Sbjct: 286 KDNLVTPVDTENMKGIEISAQKVQKSYTGSANPTSGVPGTGEEDV-------VNYPSSET 338 Query: 328 NTDKKEEQS----NYEIN--TKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372 N E+S NYE+N TK I + Y ++ L+I V V E L Sbjct: 339 NGGSSSEESSSTINYEVNRITKDIIASP--YVIKDLTINVAVEPPEGQETL 387 >gi|313620042|gb|EFR91558.1| flagellar M-ring protein FliF [Listeria innocua FSL S4-378] Length = 550 Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 85/371 (22%), Positives = 170/371 (45%), Gaps = 32/371 (8%) Query: 42 FVNSPHYD-NLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++N+P + LY L + +++ L++ +D+ + +G+ I V + R A Sbjct: 33 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91 Query: 101 GLPSSSSNSGYELFDKVNSFGLTS---FMQEITRVRA-LEGEIARTIQSISGIV-AARVH 155 G+P + + L + +S G + MQE + LE EI +QS V +A V Sbjct: 92 GIPYTGQDGNDILLN--SSLGASEEDKKMQEKVGTKVNLEKEI---VQSYGTTVDSASVQ 146 Query: 156 IVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDS 212 + +P+ S F + + TA+V ++ N + I+ V+AAVPN+ DV ++D+ Sbjct: 147 LTLPESSSIFEEASQKGTAAVTLKTKNNQTLTKEQVLGIQRTVSAAVPNVASDDVAIIDT 206 Query: 213 TGKLL----TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM 268 ++ T+ E + + I AI ++ +I L++ +DNFR +N Sbjct: 207 KNGVISEADTSQEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVTVNF 266 Query: 269 DTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE 327 D + Y D KV + + S D + T+Q ES ++P+ +++ + Sbjct: 267 DEIKQNTEHYPNDGKVRSNQKETSTDTSKGSTNQTESGTASNADVPNYTEQNGDDTNTY- 325 Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE 387 ++K E +NYE+++ +I + L + ++ V V++ +S ++ +D +AE Sbjct: 326 TSEKSSETTNYELDS-TIQEIKKHPALAKTNVVVWVDQ--------QSLNKNGVD--MAE 374 Query: 388 INKIVSAATGI 398 K + + G+ Sbjct: 375 FTKAIGVSAGL 385 >gi|315186389|gb|EFU20149.1| flagellar M-ring protein FliF [Spirochaeta thermophila DSM 6578] Length = 569 Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 110/450 (24%), Positives = 191/450 (42%), Gaps = 70/450 (15%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD---VNRISVALSEANI 72 SL + I I V+LV ++F+A+ +P L K ++D + I+ L E N+ Sbjct: 20 SLVQKIIFISIVVVLVGSLVFLAS--LSGAPSMVPLLNKA-ITDPQVLEDITTRLEEENV 76 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 ++++ + + + R L + L ++ +ELFD + + +T F + + Sbjct: 77 PYQVTADNRILVSDEKTARRMRAILVREDLVPRGTDP-WELFD-IERWTITDFERNVNLR 134 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP-----SVYKS 187 RA+ + ++++ I A V +V+P+ F + P+AS++I P S K Sbjct: 135 RAITRTVEEHLKALDDIDDASVTLVLPEKALFAEDQEPPSASIII-VPKPGSDITSNRKK 193 Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MER----NILGKSLSIVQAIQHEIE 242 E I LV AV LD +T+ D G +L E ME+ + + L Q +++E + Sbjct: 194 IEGIVKLVQFAVEGLDPDYITITDQRGVVLNDFEGMEQFDRLELARRQLKTKQELENEYK 253 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMD-----------TQQIREIVYDPD--------SK 283 I AL FRS V +N+D T++ I PD S+ Sbjct: 254 KRILSALGTV-----FRSDRVEIVNLDIELDMSDVEVKTEEHFPITMKPDNPRTPYDESE 308 Query: 284 VERSIRLSKDAQRSETS----QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQS--- 336 V SI LSK+ Q + PE E P P + LE K ++ Sbjct: 309 VVPSITLSKEIQDEKFEGTGFNPEGPPGQEGQTP-------PAYKDLEGLVGKYSRNSLI 361 Query: 337 -NYEINTKSIATTHDNYKLERLSIAVVVN---------KGRLTEVLGRSADQGKI---DS 383 N +NT++I D ++++R+S+AV ++ KG + S + + D Sbjct: 362 QNEVVNTRNITERKDPWEIKRISVAVALDGVWKWEYNEKGEVVFNPDGSIKRTYLPVSDE 421 Query: 384 YLAEINKIVSAATGINSRRGDTITITSMDF 413 L + +++ A G RGD IT+ + F Sbjct: 422 DLRKAEELIKGAVGYKRERGDLITVQHIQF 451 >gi|16799796|ref|NP_470064.1| flagellar MS-ring protein [Listeria innocua Clip11262] gi|16413173|emb|CAC95953.1| lin0721 [Listeria innocua Clip11262] Length = 550 Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 85/371 (22%), Positives = 170/371 (45%), Gaps = 32/371 (8%) Query: 42 FVNSPHYD-NLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++N+P + LY L + +++ L++ +D+ + +G+ I V + R A Sbjct: 33 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91 Query: 101 GLPSSSSNSGYELFDKVNSFGLTS---FMQEITRVRA-LEGEIARTIQSISGIV-AARVH 155 G+P + + L + +S G + MQE + LE EI +QS V +A V Sbjct: 92 GIPYTGQDGNDILLN--SSLGASEEDKKMQEKVGTKVNLEKEI---VQSYGTTVDSASVQ 146 Query: 156 IVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDS 212 + +P+ S F + + TA+V ++ N + I+ V+AAVPN+ DV ++D+ Sbjct: 147 LTLPESSSIFEEASQKGTAAVTLKTKNNQTLTKEQVLGIQRTVSAAVPNVASDDVAIIDT 206 Query: 213 TGKLL----TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM 268 ++ T+ E + + I AI ++ +I L++ +DNFR +N Sbjct: 207 KNGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVTVNF 266 Query: 269 DTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE 327 D + Y D KV + + S D + T+Q ES ++P+ +++ + Sbjct: 267 DEIKQNTEHYPNDGKVRSNQKETSTDTSKGSTNQTESGTASNADVPNYTEQNGDDTNTY- 325 Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE 387 ++K E +NYE+++ +I + L + ++ V V++ +S ++ +D +AE Sbjct: 326 TSEKSSETTNYELDS-TIQEIKKHPALAKTNVVVWVDQ--------QSLNKNGVD--MAE 374 Query: 388 INKIVSAATGI 398 K + + G+ Sbjct: 375 FTKAIGVSAGL 385 >gi|289433991|ref|YP_003463863.1| flagellar M-ring protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170235|emb|CBH26775.1| flagellar M-ring protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 547 Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 95/423 (22%), Positives = 184/423 (43%), Gaps = 56/423 (13%) Query: 29 ILVPIMLFMAARFFVNSPHYD-NLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPS 87 + V + +F+ ++N+P + LY L + +++ L++ +D+ + +G+ I V Sbjct: 23 LFVVVTVFL---LYLNTPKTEITLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDE 78 Query: 88 SMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS---FMQEITRVRA-LEGEIARTI 143 + R A G+P + + L + +S G + MQE + LE EI + Sbjct: 79 KVETLVRDKFADLGIPYTGQDGNDILLN--SSLGASEEDKKMQEKVGTKVNLEKEI---V 133 Query: 144 QSISGIV-AARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAV 199 QS V +A V + +P+ S F + + +A+V ++ N S + I+ V+AAV Sbjct: 134 QSYGTTVDSASVQLTLPESSSIFEEASQKGSAAVTLKTKNNQTLTSEQVLGIQRTVSAAV 193 Query: 200 PNLDMGDVTVLDSTGKLL----TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255 PN+ DV ++D+ ++ T E + + I AI ++ +I L++ + Sbjct: 194 PNVASEDVAIIDTKNGVISEADTTKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFAL 253 Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPH 314 DNFR +N D + Y D KV + + S D + T+ ES ++P+ Sbjct: 254 DNFRVNTSVTVNFDEIKQNTERYPNDGKVRSNQKDTSTDTSKGSTNTTESGTAANADVPN 313 Query: 315 VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR 374 ++ + ++K E +NYE+++ +I + L + ++ V V++ L Sbjct: 314 YTEENGGDTNTY-TSEKSSETTNYELDS-TIQEIKKHPALAKTNVVVWVDQQAL------ 365 Query: 375 SADQGKIDSYLAEINKIVSAATGINS--------------------RRGDTITITSMDFL 414 + +D +AE K V + G+ + GD +TI + FL Sbjct: 366 --NNNGVD--MAEFTKAVGVSAGLTPNMATPEGAEEGATPTFEGTFQNGD-VTIMPIQFL 420 Query: 415 ENQ 417 +NQ Sbjct: 421 DNQ 423 >gi|315281378|ref|ZP_07870015.1| flagellar M-ring protein FliF [Listeria marthii FSL S4-120] gi|313614975|gb|EFR88482.1| flagellar M-ring protein FliF [Listeria marthii FSL S4-120] Length = 550 Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 83/370 (22%), Positives = 169/370 (45%), Gaps = 30/370 (8%) Query: 42 FVNSPHYD-NLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++N+P + LY L + +++ L++ +D+ + +G+ I V + R A Sbjct: 33 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91 Query: 101 GLPSSSSNSGYELFDKVNSFGLTS---FMQEITRVRA-LEGEIARTIQSISGIVAARVHI 156 G+P + + L + +S G + MQE + LE EI ++ + I +A V + Sbjct: 92 GIPYTGQDGNDILLN--SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGTT--IDSASVQL 147 Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDST 213 +P+ S F + + TA+V ++ N S + I+ V+AAVPN+ DV ++D+ Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207 Query: 214 GKLL----TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 ++ T+ E + + I AI ++ +I L++ +DNFR +N D Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVTVNFD 267 Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 + Y D KV + + S D + T+ ES ++P+ +++ + Sbjct: 268 EIKQNTEHYPSDGKVRSNQKDTSTDTSKGSTNTTESGTASNADVPNYTEQNGDDTNTY-T 326 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 ++K E +NYE+++ +I + L + ++ V V++ L ++ +D +AE Sbjct: 327 SEKSSETTNYELDS-TIQEIKKHPALAKTNVVVWVDQNAL--------NKNGVD--MAEF 375 Query: 389 NKIVSAATGI 398 K + + G+ Sbjct: 376 TKAIGVSAGL 385 >gi|116872102|ref|YP_848883.1| flagellar MS-ring protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740980|emb|CAK20100.1| flagellar M-ring protein FliF [Listeria welshimeri serovar 6b str. SLCC5334] Length = 550 Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 98/406 (24%), Positives = 182/406 (44%), Gaps = 42/406 (10%) Query: 42 FVNSPHYD-NLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++N+P + LY L + +++ L++ +D+ + +G+ I V + R A Sbjct: 33 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91 Query: 101 GLPSSSSNSGYELFDKVNSFGLTS---FMQEITRVRA-LEGEIARTIQSISGIV--AARV 154 G+P + + L + +S G + MQE + LE EI +QS GI +A V Sbjct: 92 GIPYTGQDGNDILLN--SSLGASEEDKKMQEKVGTKVNLEKEI---VQSY-GITVDSASV 145 Query: 155 HIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLD 211 + +P+ S F + + TA+V ++ N + I+ V+AAVPN+ DV ++D Sbjct: 146 QLTLPESSSIFEEASQKGTAAVTLKTKNNQTLTKEQVLGIQRTVSAAVPNVASEDVAIID 205 Query: 212 STGKLL----TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELN 267 + ++ TANE + + I AI ++ +I L++ +DNFR +N Sbjct: 206 TKNGVISEADTANEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVAVN 265 Query: 268 MDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSL 326 D + Y D KV + + S D + T+ ES ++P+ ++ ++ Sbjct: 266 FDEIKQNTERYPNDGKVRSNQKDTSTDTSKGSTNTTESGTASNADVPNYTEENGG-DQNT 324 Query: 327 ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL----------TEVLGRSA 376 ++K E +NYE+++ +I + L + ++ V V++ L T+ +G SA Sbjct: 325 YTSEKSSETTNYELDS-TIQEIEKHPSLAKTNVVVWVDQQTLNKNGVDMAEFTKAIGVSA 383 Query: 377 DQGKIDSYLAEINKIVSAATGINS-----RRGDTITITSMDFLENQ 417 G + E AT + + GD +TI + FL+NQ Sbjct: 384 --GLTPNMTTEEAGAGGEATATPTFEGTFQNGD-VTIMPIQFLDNQ 426 >gi|327441055|dbj|BAK17420.1| flagellar biosynthesis/type III secretory pathway lipoprotein [Solibacillus silvestris StLB046] Length = 531 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 57/265 (21%), Positives = 117/265 (44%), Gaps = 12/265 (4%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 +F L+ ++ ++V RI+ L+ + + +++ G+ I VP + V ++ LAAQ Sbjct: 43 YFSTRTTMAQLFPEMSQAEVGRITEVLASQGVKYEVTNGGTVILVPENQVQDLQVSLAAQ 102 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 G P S F FG+T + + +E ++A ++ G+ A V I +P+ Sbjct: 103 GYPDSGEID-TSFFTSNAGFGMTDNEFNVIKQATIETDLANLVRKFEGVKDASVMITLPE 161 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLL 217 G F K + ++ P S + I+ +LV+ ++PNL ++T+++ + Sbjct: 162 EGVFLKDAKGEAQAAIVLDTAPGHKFSDDQIKGLFNLVSMSIPNLPKENITIMNQYSEYY 221 Query: 218 TANEMERNILG-----KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272 E G + + + I+ +++ + + L +G D V A+++ + Sbjct: 222 DLASAENGDGGIDSVTGQMEVKKTIERDLQRQVQQMLGTLIGPDKVVVNVSADIDFKKEN 281 Query: 273 IREIVYDP-DSKVERSIRLSKDAQR 296 E + P D + I +S AQR Sbjct: 282 REENLVRPVDEENMEGIEIS--AQR 304 >gi|315127319|ref|YP_004069322.1| flagellar MS-ring protein [Pseudoalteromonas sp. SM9913] gi|315015833|gb|ADT69171.1| flagellar MS-ring protein [Pseudoalteromonas sp. SM9913] Length = 571 Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 102/475 (21%), Positives = 199/475 (41%), Gaps = 67/475 (14%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 G + R LI+A I + I +F+ + P L K++ ++ L I Sbjct: 37 GGVDVLRQITLIVALAICLAIAIFVI--IWARQPDMRPLG-KMQTEELIETLDFLDAQKI 93 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 D+++ +G+ +SV + ++ + +GL SG ++ + FG++ ++ Sbjct: 94 DYQL--DGNVVSVDETEYQNIKLLMTREGL-DQGPTSGSDIIMQDMGFGVSQRLERERLK 150 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKS 187 E ++ARTI+ ++ + A+V + +P F + +P+A+V++ R+++ + Sbjct: 151 HGREQQLARTIEELNNVTRAKVLLAIPKENVFARREKKPSATVVLTLKRGRSLDG---EE 207 Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG----KSLSIVQAIQHEIEM 243 +++ ++A+AV L+ VTV D G+LL N + L K I + + E Sbjct: 208 VDSVVDMIASAVQGLEPSRVTVTDQNGRLL--NSGSQTSLAARSRKEYDIERKREQEYLE 265 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIV--YDPDSKVERSIRLSKDAQRSETSQ 301 I+ L +G+ N+ + V +L+MD + E Y+PD A RSET Sbjct: 266 KIDSILIPVVGLGNYTAQV--DLSMDFSAVEETQKRYNPDLP----------AVRSET-- 311 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDK------------------------KEEQSN 337 T E+N ++ V +P +L N KE N Sbjct: 312 -----TFEEN--NIGGLAVGIPGALTNQPPVNSTIPEDAMAGGAGTATSPSRTHKEATRN 364 Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG 397 YE++T + R+S++V V+ G + + L+ I +++ G Sbjct: 365 YELDTTISHKRQQTGVIRRISVSVAVDYLPTVGENGETTMTPRSVEALSNIRRLLQGGVG 424 Query: 398 INSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452 + +RGD + + ++ F+ + + D + V+ ALV +V L V Sbjct: 425 FDMQRGDALEVVTVPFVREDSALDFELPLWEQDWFMKMMRLVLGALVIIVLILAV 479 >gi|299822289|ref|ZP_07054175.1| flagellar M-ring protein FliF [Listeria grayi DSM 20601] gi|299815818|gb|EFI83056.1| flagellar M-ring protein FliF [Listeria grayi DSM 20601] Length = 554 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 93/394 (23%), Positives = 176/394 (44%), Gaps = 38/394 (9%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYD-NLYVKLEVSDVNRISVALSEANIDFRIS 77 + IL+ VI+ +L+M N P L+ L + +++ L + +D+ I Sbjct: 16 KVAILVGFFVIVTVALLYM------NQPSTKVTLFKNLSETSQTQVTDELGKIGVDYTID 69 Query: 78 DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS---FMQEITRVRA 134 NG I V S+ R + G+P + ++ L + +S G + MQE +A Sbjct: 70 KNGD-ILVDKSVEKLVRDKMEEDGIPYTGTDGNDILLN--SSLGASEEDKKMQEQVGTKA 126 Query: 135 -LEGEIARTIQSISGIV-AARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE-- 189 LE EI +QS S +V +A V + MP+ S F + + +A+V I+ +A+ Sbjct: 127 NLEKEI---LQSYSNVVDSATVQMTMPESDSIFEEASQKGSAAVTIKTKGQMSLSTAQVQ 183 Query: 190 AIRHLVAAAVPNLDMGDVTVLDS-----TGKLLTANEMERNILGKSLSIVQAIQHEIEMN 244 I+ V+AA+PN++ +V V+DS + TA + + + I AI +I+ + Sbjct: 184 GIQRTVSAAIPNINAEEVAVIDSKRGVVSDSATTAKDEGSSAYKNEVDIQDAIGKDIKTD 243 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 I L++ + NFR +N D + + Y D KV + S + + ++ S Sbjct: 244 IEDTLSSIFALKNFRVNTNVTVNFDEIKQKTEKYPRDGKVRSEQKDSTTDKSTGSAGQAS 303 Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 ++P+ ++ S ++K E +NYE+++ ++ + L + ++ V V+ Sbjct: 304 GTESNADVPNYTENG-GNSDSTYTSEKNSETTNYELDS-TMQEIKKHPALAKTNVVVWVD 361 Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 + L D ++D + E K V A G+ Sbjct: 362 QNTL--------DANRVD--MNEFTKAVGVAAGL 385 >gi|172057888|ref|YP_001814348.1| flagellar MS-ring protein [Exiguobacterium sibiricum 255-15] gi|171990409|gb|ACB61331.1| flagellar M-ring protein FliF [Exiguobacterium sibiricum 255-15] Length = 522 Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 76/342 (22%), Positives = 148/342 (43%), Gaps = 24/342 (7%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAA 99 +++ P LY KL + +++ L+E + + +G +I VP ++ LA Sbjct: 44 WLSKPTMTPLYSKLSPQEAGQVTEKLNEDGVKSEVVSGTDGVTILVPEESAENLKVELAT 103 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 G+P S Y F + FG T I ++ E+ I ++GI AA+V I +P Sbjct: 104 AGIPKSGQID-YSFFSENAGFGTTDKEMNILERDTMQTELENLITQVNGIDAAKVMITLP 162 Query: 160 DMGSFRKIGARP-TASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 + F T SV++ + S ++ + + HL+A ++PNL ++T++D Sbjct: 163 EKSVFLSDKEETSTVSVVLTSSAGSDLNQQTVQGLYHLIAKSIPNLKEENITIMDQYFTY 222 Query: 217 LTANEMERNILGKS-LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM----DTQ 271 + + G + + + + ++ I + L+ LG +V A++++ + Q Sbjct: 223 YEPGKGAQTAGGTDPMQLKKTTEKDLRQQIQQMLSVVLGPQKALVSVTADVDVTQRQEEQ 282 Query: 272 QIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDK 331 ++ E V DPD K+E + ++ + T E + + P+ T Sbjct: 283 KLVEPV-DPD-KIEGIVTSAEKVAEAYT-----GAANEGTAGTGENETINFPQGTGTTGD 335 Query: 332 KEEQS----NYEINTKSIATTHDNYKLERLSIAVVVN--KGR 367 E++ NYE+N + T Y++ L I V+V KG+ Sbjct: 336 TSEKTHDIINYEVNRITKQITGAPYEIRDLGIQVIVEPPKGQ 377 >gi|90411023|ref|ZP_01219037.1| flagellar M-ring protein [Photobacterium profundum 3TCK] gi|90328236|gb|EAS44547.1| flagellar M-ring protein [Photobacterium profundum 3TCK] Length = 580 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 84/414 (20%), Positives = 180/414 (43%), Gaps = 34/414 (8%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 R IL+L+ I V +++ M ++ P L + +++ I + + + + Sbjct: 51 RQVILVLSVSICVALIVMMV--MWIKEPEMRPLGT-YDTAELITILDHFDQTKVKYEL-- 105 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 +G++I VP+ ++ L GL +++ G E+ + FG++ ++ + E + Sbjct: 106 DGNTIRVPADNFSSIQLGLTRAGL-NNAVAEGDEILLQDMGFGVSQRLEGERLKLSRERQ 164 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVA 196 +AR I+ I + A+V + MP F + +A+V + K E +I +VA Sbjct: 165 LARAIEQIRQVRKAQVLLAMPKQSVFVRHNQEASATVFLTLGTNGSLKQPEVDSIVDMVA 224 Query: 197 AAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKALAAFLG 254 +AVP+L VTV D G+LL++ + + K + + + + I+ L LG Sbjct: 225 SAVPSLKPNRVTVTDQHGRLLSSGTEDASATAQRKEYELERKQEQAMREKIDSILIPILG 284 Query: 255 VDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------TSQPESA 305 N+ S V ++ Q+ +DP + RS ++ ++QP + Sbjct: 285 FGNYTSQVDVAMDFSAQEETRKRFDPSTPSTRSEYTVENYNNGNIVAGIPGALSNQPPAD 344 Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365 ++ Q++ + + S + +E N+E++T + R +++V V+ Sbjct: 345 ASIPQDIADMQSGR----GSSDGASHREATRNFELDTVISHLRAQTGTVSRQTVSVAVDY 400 Query: 366 GRLTEVLGRSADQGKI------DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 LT + + G++ ++ L +I +++ G + RGD + + +M F Sbjct: 401 KSLT-----NPETGEVTRVPVSEAELLKIRRLLMGGVGFSEARGDMLEVIAMPF 449 >gi|254853083|ref|ZP_05242431.1| flagellar MS-ring protein [Listeria monocytogenes FSL R2-503] gi|258606431|gb|EEW19039.1| flagellar MS-ring protein [Listeria monocytogenes FSL R2-503] Length = 425 Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 82/370 (22%), Positives = 168/370 (45%), Gaps = 30/370 (8%) Query: 42 FVNSPHYD-NLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++N+P + LY L + +++ L++ +D+ + +G+ I V + R A Sbjct: 33 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91 Query: 101 GLPSSSSNSGYELFDKVNSFGLTS---FMQEITRVRA-LEGEIARTIQSISGIVAARVHI 156 G+P + + L + +S G + MQE + LE EI ++ + I +A V + Sbjct: 92 GIPYTGQDGNDILLN--SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGTT--IDSASVQL 147 Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDST 213 +P+ S F + + TA+V ++ N S + I+ V+AAVPN+ DV ++D+ Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207 Query: 214 GKLL----TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 ++ T+ E + + I AI ++ +I L++ +DNFR +N D Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVSVNFD 267 Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 + Y D KV + + S D + + ES ++P+ +++ + Sbjct: 268 EIKQNTEHYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTY-T 326 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 ++K E +NYE+++ +I + L + ++ V V++ L ++ +D +AE Sbjct: 327 SEKSSETTNYELDS-TIQEIKKHPALAKTNVVVWVDQNAL--------NKNGVD--MAEF 375 Query: 389 NKIVSAATGI 398 K + + G+ Sbjct: 376 TKAIGVSAGL 385 >gi|330445366|ref|ZP_08309018.1| flagellar M-ring protein FliF [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489557|dbj|GAA03515.1| flagellar M-ring protein FliF [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 582 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 89/413 (21%), Positives = 180/413 (43%), Gaps = 32/413 (7%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 R IL+L+ I V +++ + ++ P L E ++ I + I++++ Sbjct: 52 RQVILVLSVAICVALIVLVT--MWIKEPEMRPLGT-YETEELIPILDHFDQKKIEYQL-- 106 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 +G++I VP+ ++ L GL ++ + G ++ + FG++ ++ + E + Sbjct: 107 DGNTIRVPAEEYSAIKLDLTRSGL-NTRTVEGDDILLQDMGFGVSQRLESERLKLSRERQ 165 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVA 196 +AR I+ IS + A+V + P F + TA+V + + E +I +VA Sbjct: 166 LARAIEQISQVRKAQVLLATPKQSVFVRHNQEATATVFLTLSSGGSLGQQEVDSIVDMVA 225 Query: 197 AAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKALAAFLG 254 AVP L VTV D G+LL++ + + K + + + + I+ L LG Sbjct: 226 TAVPGLRPTRVTVTDQHGRLLSSGTEDPSATAKRKEYELERKQEQSLREKIDAILMPVLG 285 Query: 255 VDNFRSAVVAELNMDTQQIREI--VYDPDSKVERSIRLSKDAQRSET---------SQPE 303 + N+ S V ++ MD + E YDP + RS +D T +QP Sbjct: 286 LGNYTSQV--DVAMDFSALEETRKRYDPATAATRSEFTLEDINGGNTVSGIPGALSNQPP 343 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 + QN+ + + + +E NYE++T + R +++V V Sbjct: 344 VDSAIPQNVKDMQSGS----GGADGSVHRESTRNYELDTTISHKRAQTGTIARQTVSVAV 399 Query: 364 NKGRLTEVLGRSADQGKI---DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 + +T+ + D ++ ++ +A+I +++ G + RGD + + S+ F Sbjct: 400 DYKTITDPA--TGDVTRVPVSEAEIAKIRRLLMGGIGFSEARGDLLEVLSVPF 450 >gi|254993621|ref|ZP_05275811.1| flagellar MS-ring protein [Listeria monocytogenes FSL J2-064] Length = 544 Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 82/370 (22%), Positives = 168/370 (45%), Gaps = 30/370 (8%) Query: 42 FVNSPHYD-NLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++N+P + LY L + +++ L++ +D+ + +G+ I V + R A Sbjct: 33 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91 Query: 101 GLPSSSSNSGYELFDKVNSFGLTS---FMQEITRVRA-LEGEIARTIQSISGIVAARVHI 156 G+P + + L + +S G + MQE + LE EI ++ + I +A V + Sbjct: 92 GIPYTGQDGNDILLN--SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGTT--IDSASVQL 147 Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDST 213 +P+ S F + + TA+V ++ N S + I+ V+AAVPN+ DV ++D+ Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207 Query: 214 GKLL----TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 ++ T+ E + + I AI ++ +I L++ +DNFR +N D Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVSVNFD 267 Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 + Y D KV + + S D + + ES ++P+ +++ + Sbjct: 268 EIKQNTEHYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTY-T 326 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 ++K E +NYE+++ +I + L + ++ V V++ L ++ +D +AE Sbjct: 327 SEKSSETTNYELDS-TIQEIKKHPALAKTNVVVWVDQNAL--------NKNGVD--MAEF 375 Query: 389 NKIVSAATGI 398 K + + G+ Sbjct: 376 TKAIGVSAGL 385 >gi|89075513|ref|ZP_01161924.1| flagellar M-ring protein [Photobacterium sp. SKA34] gi|89048785|gb|EAR54356.1| flagellar M-ring protein [Photobacterium sp. SKA34] Length = 582 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 92/420 (21%), Positives = 184/420 (43%), Gaps = 34/420 (8%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 R IL+L+ I V +++ + ++ P L E ++ I + I +++ Sbjct: 52 RQVILVLSVAICVALIVLVT--MWIKEPEMRPLG-SYETEELIPILDHFDQKKIAYQL-- 106 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 +G++I VP+ ++ L GL ++ + G ++ + FG++ M+ + E + Sbjct: 107 DGNTIRVPADEYSAIKLDLTRTGL-NAQTVEGDDILLQDMGFGVSQRMESERLKLSRERQ 165 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVA 196 +AR I+ IS + A+V + P F + TA+V + + E +I +VA Sbjct: 166 LARAIEQISQVRKAQVLLATPKQSVFVRHNQEATATVFLTLSSGGSLGQQEVDSIVDMVA 225 Query: 197 AAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKALAAFLG 254 AVP L VTV D G+LL++ + + K + + + + I+ L LG Sbjct: 226 TAVPGLRPTRVTVTDQHGRLLSSGTEDPSTTAKRKEYELERKQEQALREKIDAILMPVLG 285 Query: 255 VDNFRSAVVAELNMDTQQIREI--VYDPDSKVERSIRLSKDAQRSE---------TSQPE 303 + N+ S V ++ MD + E YDP + RS +D ++QP Sbjct: 286 LGNYTSQV--DVAMDFSALEETRKRYDPSTAATRSEFTLEDINGGNQVAGIPGALSNQPP 343 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 + QN+ + + + +E NYE++T ++R +++V V Sbjct: 344 VESAIPQNVKDMQSGT----NGSDGSVHRESTRNYELDTTISHKRAQTGVIDRQTVSVAV 399 Query: 364 NKGRLTEVLGRSADQGKI---DSYLAEINKIVSAATGINSRRGDTITITSMDFL--ENQL 418 + +T+ ++ D ++ ++ +A+I +++ G RGD + + S+ F E+QL Sbjct: 400 DYKTITDP--KTGDVTRVPVSEAEIAKIRRLLMGGIGFLEARGDLLEVLSVPFALPESQL 457 >gi|328467278|gb|EGF38358.1| flagellar MS-ring protein [Listeria monocytogenes 1816] Length = 544 Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 82/370 (22%), Positives = 168/370 (45%), Gaps = 30/370 (8%) Query: 42 FVNSPHYD-NLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++N+P + LY L + +++ L++ +D+ + +G+ I V + R A Sbjct: 27 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 85 Query: 101 GLPSSSSNSGYELFDKVNSFGLTS---FMQEITRVRA-LEGEIARTIQSISGIVAARVHI 156 G+P + + L + +S G + MQE + LE EI ++ + I +A V + Sbjct: 86 GIPYTGQDGNDILLN--SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGTT--IDSASVQL 141 Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDST 213 +P+ S F + + TA+V ++ N S + I+ V+AAVPN+ DV ++D+ Sbjct: 142 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 201 Query: 214 GKLL----TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 ++ T+ E + + I AI ++ +I L++ +DNFR +N D Sbjct: 202 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVSVNFD 261 Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 + Y D KV + + S D + + ES ++P+ +++ + Sbjct: 262 EIKQNTEHYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTY-T 320 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 ++K E +NYE+++ +I + L + ++ V V++ L ++ +D +AE Sbjct: 321 SEKSSETTNYELDS-TIQEIKKHPALAKTNVVVWVDQNAL--------NKNGVD--MAEF 369 Query: 389 NKIVSAATGI 398 K + + G+ Sbjct: 370 TKAIGVSAGL 379 >gi|226223344|ref|YP_002757451.1| flagellar basal-body M-ring protein FliF [Listeria monocytogenes Clip81459] gi|225875806|emb|CAS04509.1| Putative flagellar basal-body M-ring protein FliF [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 550 Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 82/370 (22%), Positives = 168/370 (45%), Gaps = 30/370 (8%) Query: 42 FVNSPHYD-NLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++N+P + LY L + +++ L++ +D+ + +G+ I V + R A Sbjct: 33 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91 Query: 101 GLPSSSSNSGYELFDKVNSFGLTS---FMQEITRVRA-LEGEIARTIQSISGIVAARVHI 156 G+P + + L + +S G + MQE + LE EI ++ + I +A V + Sbjct: 92 GIPYTGQDGNDILLN--SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGTT--IDSASVQL 147 Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDST 213 +P+ S F + + TA+V ++ N S + I+ V+AAVPN+ DV ++D+ Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207 Query: 214 GKLL----TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 ++ T+ E + + I AI ++ +I L++ +DNFR +N D Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVSVNFD 267 Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 + Y D KV + + S D + + ES ++P+ +++ + Sbjct: 268 EIKQNTEHYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTY-T 326 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 ++K E +NYE+++ +I + L + ++ V V++ L ++ +D +AE Sbjct: 327 SEKSSETTNYELDS-TIQEIKKHPALAKTNVVVWVDQNAL--------NKNGVD--MAEF 375 Query: 389 NKIVSAATGI 398 K + + G+ Sbjct: 376 TKAIGVSAGL 385 >gi|332533127|ref|ZP_08408996.1| flagellar M-ring protein FliF [Pseudoalteromonas haloplanktis ANT/505] gi|332037409|gb|EGI73863.1| flagellar M-ring protein FliF [Pseudoalteromonas haloplanktis ANT/505] Length = 571 Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 92/422 (21%), Positives = 188/422 (44%), Gaps = 37/422 (8%) Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L I++++ +G+ +SV S ++ + +GL + SG ++ + FG++ + Sbjct: 88 LDAQKIEYQL--DGNVVSVDESEYQNIKLLMTREGLEQGPA-SGSDIIMQDMGFGVSQRL 144 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAIN 181 + E ++ARTI+ ++ I A+V + +P F + +P+A+V++ R+++ Sbjct: 145 ERERLKHGREQQLARTIEELNNITRAKVLLAIPKENVFARREKKPSATVVLTLKRGRSLD 204 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG----KSLSIVQAI 237 + +++ ++A+AV L+ VTV D G+LL N ++ L K + + Sbjct: 205 ---REEVDSVVDMIASAVQGLEPARVTVTDQNGRLL--NSGSQSSLAARSRKEYDLERKR 259 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV--YDPDSKVERSIR------ 289 + E I+ L +G+ N+ + V +L+MD + E Y+PD RS Sbjct: 260 EQEYLEKIDSILIPVVGLANYTAQV--DLSMDFSSVEETQKRYNPDLPAVRSETTFEENN 317 Query: 290 ---LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346 L+ + T+QP + N+P + + + KE NYE++T Sbjct: 318 IGGLAVGIPGALTNQP----PLNSNIPEDAGQGGAGTATSPTRSHKEATRNYELDTTISH 373 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 + + R+S++V V+ G + + L+ I +++ G + +RGD + Sbjct: 374 KRQQSGVIRRISVSVAVDYVPKVGENGETTMAPRSVEALSNIRRLLQGGVGFDMQRGDAL 433 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 + ++ F+ + V + D + V+ ALV +V L+ + L+RL Sbjct: 434 EVVTVPFVREATNLAIEVPLWEQDWFMKIARLVLGALVIIV---LIMAVVKPMLKRLIYP 490 Query: 467 DD 468 DD Sbjct: 491 DD 492 >gi|47091676|ref|ZP_00229472.1| flagellar M-ring protein FliF [Listeria monocytogenes str. 4b H7858] gi|254824007|ref|ZP_05229008.1| flagellar M-ring protein FliF [Listeria monocytogenes FSL J1-194] gi|254932007|ref|ZP_05265366.1| flagellar M-ring protein FliF [Listeria monocytogenes HPB2262] gi|255521223|ref|ZP_05388460.1| flagellar MS-ring protein [Listeria monocytogenes FSL J1-175] gi|300764526|ref|ZP_07074519.1| flagellar M-ring protein FliF [Listeria monocytogenes FSL N1-017] gi|47019995|gb|EAL10732.1| flagellar M-ring protein FliF [Listeria monocytogenes str. 4b H7858] gi|293583558|gb|EFF95590.1| flagellar M-ring protein FliF [Listeria monocytogenes HPB2262] gi|293593234|gb|EFG00995.1| flagellar M-ring protein FliF [Listeria monocytogenes FSL J1-194] gi|300514880|gb|EFK41934.1| flagellar M-ring protein FliF [Listeria monocytogenes FSL N1-017] gi|328475674|gb|EGF46423.1| flagellar MS-ring protein [Listeria monocytogenes 220] gi|332311137|gb|EGJ24232.1| Flagellar M-ring protein FliF [Listeria monocytogenes str. Scott A] Length = 550 Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 82/370 (22%), Positives = 168/370 (45%), Gaps = 30/370 (8%) Query: 42 FVNSPHYD-NLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++N+P + LY L + +++ L++ +D+ + +G+ I V + R A Sbjct: 33 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91 Query: 101 GLPSSSSNSGYELFDKVNSFGLTS---FMQEITRVRA-LEGEIARTIQSISGIVAARVHI 156 G+P + + L + +S G + MQE + LE EI ++ + I +A V + Sbjct: 92 GIPYTGQDGNDILLN--SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGTT--IDSASVQL 147 Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDST 213 +P+ S F + + TA+V ++ N S + I+ V+AAVPN+ DV ++D+ Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207 Query: 214 GKLL----TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 ++ T+ E + + I AI ++ +I L++ +DNFR +N D Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVSVNFD 267 Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 + Y D KV + + S D + + ES ++P+ +++ + Sbjct: 268 EIKQNTEHYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTY-T 326 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 ++K E +NYE+++ +I + L + ++ V V++ L ++ +D +AE Sbjct: 327 SEKSSETTNYELDS-TIQEIKKHPALAKTNVVVWVDQNAL--------NKNGVD--MAEF 375 Query: 389 NKIVSAATGI 398 K + + G+ Sbjct: 376 TKAIGVSAGL 385 >gi|255025681|ref|ZP_05297667.1| flagellar MS-ring protein [Listeria monocytogenes FSL J2-003] Length = 550 Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 82/370 (22%), Positives = 168/370 (45%), Gaps = 30/370 (8%) Query: 42 FVNSPHYD-NLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++N+P + LY L + +++ L++ +D+ + +G+ I V + R A Sbjct: 33 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91 Query: 101 GLPSSSSNSGYELFDKVNSFGLTS---FMQEITRVRA-LEGEIARTIQSISGIVAARVHI 156 G+P + + L + +S G + MQE + LE EI ++ + I +A V + Sbjct: 92 GIPYTGQDGNDILLN--SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGTT--IDSASVQL 147 Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDST 213 +P+ S F + + TA+V ++ N S + I+ V+AAVPN+ DV ++D+ Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207 Query: 214 GKLL----TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 ++ T+ E + + I AI ++ +I L++ +DNFR +N D Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVAVNFD 267 Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 + Y D KV + + S D + + ES ++P+ +++ + Sbjct: 268 EIKQNTEHYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTY-T 326 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 ++K E +NYE+++ +I + L + ++ V V++ L ++ +D +AE Sbjct: 327 SEKSSETTNYELDS-TIQEIKKHPALAKTNVVVWVDQNAL--------NKNGVD--MAEF 375 Query: 389 NKIVSAATGI 398 K + + G+ Sbjct: 376 TKAIGVSAGL 385 >gi|313610108|gb|EFR85433.1| flagellar M-ring protein FliF [Listeria monocytogenes FSL F2-208] Length = 550 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 82/370 (22%), Positives = 168/370 (45%), Gaps = 30/370 (8%) Query: 42 FVNSPHYD-NLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++N+P + LY L + +++ L++ +D+ + +G+ I V + R A Sbjct: 33 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91 Query: 101 GLPSSSSNSGYELFDKVNSFGLTS---FMQEITRVRA-LEGEIARTIQSISGIVAARVHI 156 G+P + + L + +S G + MQE + LE EI ++ + I +A V + Sbjct: 92 GIPYTGQDGNDILLN--SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGTT--IDSASVQL 147 Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDST 213 +P+ S F + + TA+V ++ N S + I+ V+AAVPN+ DV ++D+ Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207 Query: 214 GKLL----TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 ++ T+ E + + I AI ++ +I L++ +DNFR +N D Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVTVNFD 267 Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 + Y D KV + + S D + + ES ++P+ +++ + Sbjct: 268 EIKQNTEHYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTY-T 326 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 ++K E +NYE+++ +I + L + ++ V V++ L ++ +D +AE Sbjct: 327 SEKSSETTNYELDS-TIQEIKKHPALAKTNVVVWVDQNAL--------NKNGVD--MAEF 375 Query: 389 NKIVSAATGI 398 K + + G+ Sbjct: 376 TKAIGVSAGL 385 >gi|16802755|ref|NP_464240.1| flagellar MS-ring protein [Listeria monocytogenes EGD-e] gi|47095279|ref|ZP_00232890.1| flagellar M-ring protein FliF [Listeria monocytogenes str. 1/2a F6854] gi|224498795|ref|ZP_03667144.1| flagellar MS-ring protein [Listeria monocytogenes Finland 1988] gi|224501982|ref|ZP_03670289.1| flagellar MS-ring protein [Listeria monocytogenes FSL R2-561] gi|254829370|ref|ZP_05234057.1| flagellar MS-ring protein [Listeria monocytogenes FSL N3-165] gi|254830296|ref|ZP_05234951.1| flagellar MS-ring protein [Listeria monocytogenes 10403S] gi|254900051|ref|ZP_05259975.1| flagellar MS-ring protein [Listeria monocytogenes J0161] gi|254911396|ref|ZP_05261408.1| flagellar MS-ring protein [Listeria monocytogenes J2818] gi|254935723|ref|ZP_05267420.1| flagellar MS-ring protein [Listeria monocytogenes F6900] gi|255028428|ref|ZP_05300379.1| flagellar MS-ring protein [Listeria monocytogenes LO28] gi|284801043|ref|YP_003412908.1| flagellar MS-ring protein [Listeria monocytogenes 08-5578] gi|284994185|ref|YP_003415953.1| flagellar MS-ring protein [Listeria monocytogenes 08-5923] gi|16410102|emb|CAC98791.1| lmo0713 [Listeria monocytogenes EGD-e] gi|47016350|gb|EAL07272.1| flagellar M-ring protein FliF [Listeria monocytogenes str. 1/2a F6854] gi|258601784|gb|EEW15109.1| flagellar MS-ring protein [Listeria monocytogenes FSL N3-165] gi|258608307|gb|EEW20915.1| flagellar MS-ring protein [Listeria monocytogenes F6900] gi|284056605|gb|ADB67546.1| flagellar MS-ring protein [Listeria monocytogenes 08-5578] gi|284059652|gb|ADB70591.1| flagellar MS-ring protein [Listeria monocytogenes 08-5923] gi|293589334|gb|EFF97668.1| flagellar MS-ring protein [Listeria monocytogenes J2818] Length = 550 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 82/370 (22%), Positives = 168/370 (45%), Gaps = 30/370 (8%) Query: 42 FVNSPHYD-NLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++N+P + LY L + +++ L++ +D+ + +G+ I V + R A Sbjct: 33 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91 Query: 101 GLPSSSSNSGYELFDKVNSFGLTS---FMQEITRVRA-LEGEIARTIQSISGIVAARVHI 156 G+P + + L + +S G + MQE + LE EI ++ + I +A V + Sbjct: 92 GIPYTGQDGNDILLN--SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGTT--IDSASVQL 147 Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDST 213 +P+ S F + + TA+V ++ N S + I+ V+AAVPN+ DV ++D+ Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207 Query: 214 GKLL----TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 ++ T+ E + + I AI ++ +I L++ +DNFR +N D Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVAVNFD 267 Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 + Y D KV + + S D + + ES ++P+ +++ + Sbjct: 268 EIKQNTEHYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTY-T 326 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 ++K E +NYE+++ +I + L + ++ V V++ L ++ +D +AE Sbjct: 327 SEKSSETTNYELDS-TIQEIKKHPALAKTNVVVWVDQNAL--------NKNGVD--MAEF 375 Query: 389 NKIVSAATGI 398 K + + G+ Sbjct: 376 TKAIGVSAGL 385 >gi|46906964|ref|YP_013353.1| flagellar MS-ring protein [Listeria monocytogenes serotype 4b str. F2365] gi|46880230|gb|AAT03530.1| flagellar M-ring protein FliF [Listeria monocytogenes serotype 4b str. F2365] Length = 550 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 82/370 (22%), Positives = 168/370 (45%), Gaps = 30/370 (8%) Query: 42 FVNSPHYD-NLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++N+P + LY L + +++ L++ +D+ + +G+ I V + R A Sbjct: 33 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91 Query: 101 GLPSSSSNSGYELFDKVNSFGLTS---FMQEITRVRA-LEGEIARTIQSISGIVAARVHI 156 G+P + + L + +S G + MQE + LE EI ++ + I +A V + Sbjct: 92 GIPYTGQDGNDILLN--SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGTT--IDSASVQL 147 Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDST 213 +P+ S F + + TA+V ++ N S + I+ V+AAVPN+ DV ++D+ Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207 Query: 214 GKLL----TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 ++ T+ E + + I AI ++ +I L++ +DNFR +N D Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVSVNFD 267 Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 + Y D KV + + S D + + ES ++P+ +++ + Sbjct: 268 EIKQNTEHYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTY-T 326 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 ++K E +NYE+++ +I + L + ++ V V++ L ++ +D +AE Sbjct: 327 SEKSSETTNYELDS-TIQEIKKHPALAKTNVVVWVDQNAL--------NKNGVD--MAEF 375 Query: 389 NKIVSAATGI 398 K + + G+ Sbjct: 376 TKAIGVSAGL 385 >gi|217965189|ref|YP_002350867.1| flagellar M-ring protein FliF [Listeria monocytogenes HCC23] gi|217334459|gb|ACK40253.1| flagellar M-ring protein FliF [Listeria monocytogenes HCC23] gi|307570252|emb|CAR83431.1| flagellar M-ring protein [Listeria monocytogenes L99] Length = 550 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 84/371 (22%), Positives = 168/371 (45%), Gaps = 32/371 (8%) Query: 42 FVNSPHYD-NLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++N+P + LY L + +++ L++ +D+ + +G+ I V + R A Sbjct: 33 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91 Query: 101 GLPSSSSNSGYELFDKVNSFGLTS---FMQEITRVRA-LEGEIARTIQSISGIV-AARVH 155 G+P + + L + +S G + MQE + LE EI +QS V +A V Sbjct: 92 GIPYTGQDGNDILLN--SSLGASEEDKKMQEKVGTKVNLEKEI---VQSYGTTVDSASVQ 146 Query: 156 IVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDS 212 + +P+ S F + + TA+V ++ N S + I+ V+AAVPN+ DV ++D+ Sbjct: 147 LTLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDT 206 Query: 213 TGKLL----TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM 268 ++ T+ E + + I AI ++ +I L++ +DNFR +N Sbjct: 207 KNGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVTVNF 266 Query: 269 DTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE 327 D + Y D KV + + S D + + ES ++P+ +++ + Sbjct: 267 DEIKQNTEHYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTY- 325 Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE 387 ++K E +NYE+++ +I + L + ++ V V++ L ++ +D +AE Sbjct: 326 TSEKSSETTNYELDS-TIQEIKKHPALAKTNVVVWVDQNAL--------NKNGVD--MAE 374 Query: 388 INKIVSAATGI 398 K + + G+ Sbjct: 375 FTKAIGVSAGL 385 >gi|290894011|ref|ZP_06556986.1| flagellar M-ring protein FliF [Listeria monocytogenes FSL J2-071] gi|290556457|gb|EFD89996.1| flagellar M-ring protein FliF [Listeria monocytogenes FSL J2-071] Length = 550 Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 84/371 (22%), Positives = 168/371 (45%), Gaps = 32/371 (8%) Query: 42 FVNSPHYD-NLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++N+P + LY L + +++ L++ +D+ + +G+ I V + R A Sbjct: 33 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91 Query: 101 GLPSSSSNSGYELFDKVNSFGLTS---FMQEITRVRA-LEGEIARTIQSISGIV-AARVH 155 G+P + + L + +S G + MQE + LE EI +QS V +A V Sbjct: 92 GIPYTGQDGNDILLN--SSLGASEEDKKMQEKVGTKVNLEKEI---VQSYGTTVDSASVQ 146 Query: 156 IVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDS 212 + +P+ S F + + TA+V ++ N S + I+ V+AAVPN+ DV ++D+ Sbjct: 147 LTLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDT 206 Query: 213 TGKLL----TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM 268 ++ T+ E + + I AI ++ +I L++ +DNFR +N Sbjct: 207 KNGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVTVNF 266 Query: 269 DTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE 327 D + Y D KV + + S D + + ES ++P+ +++ + Sbjct: 267 DEIKQNTEHYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTY- 325 Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE 387 ++K E +NYE+++ +I + L + ++ V V++ L ++ +D +AE Sbjct: 326 TSEKSSETTNYELDS-TIQEIKKHPALAKTNVVVWVDQNAL--------NKNGVD--MAE 374 Query: 388 INKIVSAATGI 398 K + + G+ Sbjct: 375 FTKAIGVSAGL 385 >gi|54308116|ref|YP_129136.1| flagellar MS-ring protein [Photobacterium profundum SS9] gi|46912542|emb|CAG19334.1| Putative polar flagellar M-ring protein FliF [Photobacterium profundum SS9] Length = 580 Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 83/414 (20%), Positives = 182/414 (43%), Gaps = 34/414 (8%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 R IL+L+ I V +++ M ++ P L + +++ I + + + + Sbjct: 51 RQVILVLSVSICVALIVMMV--MWIKEPEMRPLGT-YDTAELISILDHFDQTKVQYEL-- 105 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 +G++I VP+ ++ L GL ++S G ++ + FG++ ++ + E + Sbjct: 106 DGNTIRVPADDFSSIQLGLTRAGL-NNSVAEGDDILLQDMGFGVSQRLEGERLKLSRERQ 164 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-AINPSV-YKSAEAIRHLVA 196 +AR I+ I + A+V + +P F + +A+V + N S+ + ++I +VA Sbjct: 165 LARAIEQIRQVRKAQVLLALPKQSVFVRHNQEASATVFLTLGTNGSLKQQEVDSIVDMVA 224 Query: 197 AAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKALAAFLG 254 +AVP+L VTV D G+LL++ + + K + + + + I+ L LG Sbjct: 225 SAVPSLKPNRVTVTDQHGRLLSSGTEDPSATAQRKEYELERKQEQGMREKIDSILIPILG 284 Query: 255 VDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------TSQPESA 305 N+ S V ++ Q+ +DP + RS ++ ++QP + Sbjct: 285 FGNYTSQVDVTMDFSAQEETRKRFDPSTPSTRSEYTVENYNNGNIVAGIPGALSNQPPAD 344 Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365 ++ Q++ + + S +E N+E++T + R +++V V+ Sbjct: 345 ASIPQDIADMQSGR----GSSNGASHREATRNFELDTVISHRRAQTGTVSRQTVSVAVDY 400 Query: 366 GRLTEVLGRSADQGKI------DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 LT + + G++ ++ L +I +++ G + RGD + + +M F Sbjct: 401 KSLT-----NPETGEVTRVPVSEAELLKIRRLLMGGVGFSEARGDMLEVIAMPF 449 >gi|326791543|ref|YP_004309364.1| flagellar M-ring protein FliF [Clostridium lentocellum DSM 5427] gi|326542307|gb|ADZ84166.1| flagellar M-ring protein FliF [Clostridium lentocellum DSM 5427] Length = 529 Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/229 (22%), Positives = 116/229 (50%), Gaps = 12/229 (5%) Query: 30 LVPIMLFMAARFFVNSPHYDNLYVK-LEVSDVNRISVALSEANIDFRISDNGSSISVPSS 88 ++ +++ + A + P NL+ + L+ + +++ L+E I +++ ++ ++I V + Sbjct: 31 VLALIIAITAVVLLTRPKMKNLFSENLDSKSIGQVATVLNENGIKYKLINDSTNIQVQEN 90 Query: 89 MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT--RVRALEGEIARTIQSI 146 +A ++ A +P S FD+V + +++ E+T + ++ RT++S+ Sbjct: 91 QYEQALMYTAMSDVPESGMT-----FDQVINNTMSTTQTEMTAKNNEYKKQQLERTLRSM 145 Query: 147 SGIVAARVHIVMPDM-GSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMG 205 GI +ARV +V+P+ ++ + AS+ + K E I ++++V NLD Sbjct: 146 EGIESARVELVIPEQKNAYLQSQVESRASIFLTLSKTLTTKQCEGIATYISSSVANLDKK 205 Query: 206 DVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLG 254 ++ V+DS G L + E + LG L+ Q I+ E ++ + ++ LG Sbjct: 206 NIVVIDSQGNTLYSGS-EESQLG--LNKQQEIKLLAEQDVTQKVSNLLG 251 >gi|323174683|gb|EFZ60303.1| flagellar M-ring protein FliF [Escherichia coli LT-68] Length = 380 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 63/249 (25%), Positives = 109/249 (43%), Gaps = 34/249 (13%) Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQAIQHEIEMNINKA 248 AI HLV++AV L G+VT++D G LLT N R++ L ++ I+ I Sbjct: 18 AIVHLVSSAVAGLPPGNVTLVDQGGHLLTQFNTSGRDLNDAQLKYASDVEGRIQRRIEAI 77 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESA 305 L+ +G N + V A+L+ +++ E Y P+ ++ S+ SE S P Sbjct: 78 LSPIVGKGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGGV 137 Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATT 348 N P ++ P+ N + +++Q SNYE++ T Sbjct: 138 PGALSNQPAPAN-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTK 196 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGD 404 + ++RLS+AVVVN L + GK + + +I + A G + +RGD Sbjct: 197 MNVGDVQRLSVAVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGD 248 Query: 405 TITITSMDF 413 ++ + + F Sbjct: 249 SLNVVNSPF 257 >gi|260775676|ref|ZP_05884572.1| type III secretion bridge between inner and outermembrane lipoprotein (yscJ,HrcJ,EscJ PscJ) [Vibrio coralliilyticus ATCC BAA-450] gi|260608092|gb|EEX34261.1| type III secretion bridge between inner and outermembrane lipoprotein (yscJ,HrcJ,EscJ PscJ) [Vibrio coralliilyticus ATCC BAA-450] Length = 268 Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 51/150 (34%), Positives = 85/150 (56%), Gaps = 10/150 (6%) Query: 59 DVNRISVALSEANI--DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 D N + ALS+ NI + R+ NG +I V S+ +GKA L+ GLP + +S +F Sbjct: 39 DANAVLSALSDKNISAEKRMDKNGVTILVNSNQMGKALRVLSIAGLPKAPHDSLGSMFP- 97 Query: 117 VNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 N +++ ++E R + AL E+ T+ I G+V ARVH+V+P+ + + + +ASV Sbjct: 98 -NDGVISTPLEEQARYIHALSQELEYTLSEIDGVVLARVHVVLPEKIAPGEPISPASASV 156 Query: 176 MIR---AINPSVYKSAEAIRHLVAAAVPNL 202 I+ ++P V K+ I+ LVA ++P L Sbjct: 157 FIKHQTTLDPDVIKN--RIQRLVAGSIPGL 184 >gi|328947994|ref|YP_004365331.1| flagellar M-ring protein FliF [Treponema succinifaciens DSM 2489] gi|328448318|gb|AEB14034.1| flagellar M-ring protein FliF [Treponema succinifaciens DSM 2489] Length = 568 Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 98/386 (25%), Positives = 173/386 (44%), Gaps = 66/386 (17%) Query: 77 SDNGSSISVPSSMVGKA-RIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135 SDN ISV +S + K R L A+G SS ++ Y LFD V + T F ++ RA Sbjct: 82 SDN--YISVENSDIAKKYRSRLIAEGYAPSSLDA-YSLFD-VTRWSRTDFDDKVNWQRAT 137 Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI-NPSVYKSAEAIR-- 192 E + + ++S+ GI A V++V+PD F + +AS+++ A N V IR Sbjct: 138 ETALKQQLESLDGIQRAEVNLVLPDEALFTENQNPTSASIVLYAKGNSDVLTDKRKIRGI 197 Query: 193 -HLVAAAVPNLDMGDVTVLDSTGKL-------------LTANEMERNILGKSLSIVQAIQ 238 +L+ A V L ++ + D + ++ E +R ++ K + + Sbjct: 198 QNLIKACVEGLRDENIVINDGASNVQINDFEGMAESDRISNIEKQRKLILKQETTYTGL- 256 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVA-ELNMDTQQIREIVY--------DP-----DSKV 284 + KAL D R A + ++NM ++ Y +P DS++ Sbjct: 257 ------VLKALKGTFSDDRVRVANIKIDMNMSERKTTSKEYTGITIRPDNPNTPYDDSEI 310 Query: 285 ERSIRLSKDA-QRSETS---QPESAVTVE-QNMPHVSDRKVPLPRSLENTDKKEEQSNYE 339 S+ LS++ +S T PE VE QN P SD + +S E K+ NY Sbjct: 311 VNSLTLSEETVNKSFTGTGYNPEGPAGVEGQNPPVYSDMSNVVGKSTEEGVKR----NYA 366 Query: 340 INTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA----DQGKID--------SYLAE 387 +N K+++ + +++R++++V ++ G+ +V + + G + L Sbjct: 367 LNEKNVSEIT-SPQIDRITVSVNID-GQWRKVYDENNRPILENGHLKREYIPITPEQLVN 424 Query: 388 INKIVSAATGINSRRGDTITITSMDF 413 K+V A G N RGD++T+T++ F Sbjct: 425 TTKLVQDAVGYNKSRGDSVTVTNIPF 450 >gi|289678988|ref|ZP_06499878.1| flagellar MS-ring protein [Pseudomonas syringae pv. syringae FF5] Length = 395 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 96/416 (23%), Positives = 166/416 (39%), Gaps = 90/416 (21%) Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINK 247 AI +LVA +VP L +TV+D G LL+ A E + GK + ++ + + Sbjct: 9 AIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGMLTQRVQN 68 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE--------- 298 L LG D +++ V A ++ + ++PD RS + S + QRS Sbjct: 69 ILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQ-SVNEQRSSSSSSGGVPG 127 Query: 299 --TSQPESAVT----------------------VEQNMPHVSDRKVPLPRSLENTDKKEE 334 ++QP T ++ N + D P K Sbjct: 128 ALSNQPPGPATAPQTAGAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPADKRV 187 Query: 335 QS--NYEINTKSIATTHDNYKLERLSIAVVVN--------KGRLTEVLGRSADQGKIDSY 384 QS N+E++ T +L RLS+AVVV+ G ++ +AD Sbjct: 188 QSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVSRAPWSAAD------- 240 Query: 385 LAEINKIVSAATGINSRRGDTITITSMDF-------LENQLFNSGTVQVSFMDILSRHFA 437 LA ++V A G ++ RGD++++ ++ F L F S Q F DI+ + Sbjct: 241 LARFTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYS---QPWFWDIVKQA-- 295 Query: 438 TVINALVFLVGTLLVTFLGLHALRR-LHNIDDAKKGEV---GGKSILSPPPISSAVTTGL 493 VG + + L LR L+NI + K+ E+ GG + L G Sbjct: 296 ---------VGVIFILILVFGVLRPVLNNITNGKRKELAGFGGDAELG----GMGGLDGE 342 Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549 + ND ++L Q I L S Y ++ + ++ ++ + R A+++++W Sbjct: 343 LSNDRVSL-GGPQSIL-----LPSPTEGYDAQLNAIK--SLVAEDPGRVAQVVKEW 390 >gi|326204626|ref|ZP_08194482.1| flagellar M-ring protein FliF [Clostridium papyrosolvens DSM 2782] gi|325985193|gb|EGD46033.1| flagellar M-ring protein FliF [Clostridium papyrosolvens DSM 2782] Length = 524 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 65/270 (24%), Positives = 124/270 (45%), Gaps = 23/270 (8%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +L LL F+K +TRI I+ +++V + + + F + P Y + +V Sbjct: 8 LLKPLLDFWKGLDKSQKTRIFIITGIVVVSVSIGL---FLITRPTYTTVINNASTEEVAA 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + L E I ++++++ S I V +A LA + S +G D +++ + Sbjct: 65 MQKILKEKGISYKLTEDKSGIIVNEKDSDEAHFELA-----TGYSKNGLTFADALSNIKI 119 Query: 123 TSFMQEITRVRAL--EGEIARTIQSISGIVAARVHIVMPD----MGSFRKIGARPTASVM 176 + + + E +IAR + I A V IV P+ + A+ ASV+ Sbjct: 120 NTTESDKKHIWQQLDESDIARQLMHFQNIENADVTIVRPEKTLLIDDNNSKDAK--ASVV 177 Query: 177 IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSI 233 I + K AE+I +VA++V LD +VTV+D+ G +L + + +E+ + Sbjct: 178 ITPKDEISAKQAESIVKIVASSVEGLDPKNVTVVDNKGNVLNTDSGDGIEKT--STQYDM 235 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVV 263 + ++++E N+ + L L D+F +A V Sbjct: 236 KKKYKNDLEKNVKEVLVGQL--DSFDTAKV 263 >gi|171319020|ref|ZP_02908147.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia ambifaria MEX-5] gi|171095775|gb|EDT40728.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia ambifaria MEX-5] Length = 264 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 7/164 (4%) Query: 51 LYVKLEVSDVNRISVALSEANI----DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 L+ ++ D N + L A + D R +D G +SV S+ V A L++ GLP Sbjct: 19 LFDQINERDANEMLSVLGRAGVAAEKDQRSAD-GWRLSVASADVSVALEILSSAGLPRER 77 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 S ELF K T + + V A+ E++RTI +I G++ ARVH+ +P + Sbjct: 78 YKSIGELFPKEGLIS-TPVEEHMRSVYAISQELSRTISNIDGVITARVHLNIPRREPLLR 136 Query: 167 IGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209 + PTASV+++ S+ + AI+ LV A+ +LD +VTV Sbjct: 137 VQQTPTASVLVKYRAEVSMQPNTLAIKDLVVGAIKDLDRANVTV 180 >gi|71281873|ref|YP_268244.1| flagellar MS-ring protein [Colwellia psychrerythraea 34H] gi|71147613|gb|AAZ28086.1| flagellar M-ring protein FliF [Colwellia psychrerythraea 34H] Length = 563 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 69/273 (25%), Positives = 122/273 (44%), Gaps = 15/273 (5%) Query: 12 KSG--TSLGRTRILILASVILVPIMLFMAARFFV---NSPHYDNLYVKLEVSDVNRISVA 66 KSG SLG IL ++++ + A F + N P Y + KL + Sbjct: 15 KSGFAASLGSVDILRQVTIVVALAICLAIAVFVIMLANEPEY-RVISKLPTKQLITTMDF 73 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L ++++ +N +ISVP+ ++ LA +GL S G ++ K FG++ + Sbjct: 74 LDANQVEYQQENN--TISVPADEYQNVKLLLAREGLTDEPSQ-GEDILMKDMGFGVSQRL 130 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 + E +IA+TI+ + I A+V + +P F + P+A+V++ + Sbjct: 131 ERERLKFGREQQIAKTIEQLKSISRAKVLLAIPRENIFARREKNPSATVVLTMQRGKILS 190 Query: 187 SAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIE 242 E A+ +VA+AV L VTV D G+LL + + + K I Q + E Sbjct: 191 EEEVDAVVDIVASAVQGLTPNRVTVTDQNGRLLNSGSQDSISSRSRKEFEIEQKREQEYM 250 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 I+ L +G+ N+ + V ++ MD + E Sbjct: 251 EKIDSILIPVVGLGNYTAQV--DITMDFTNVEE 281 >gi|207111036|ref|ZP_03245198.1| flagellar MS-ring protein [Helicobacter pylori HPKX_438_CA4C1] Length = 69 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 47/69 (68%), Gaps = 2/69 (2%) Query: 82 SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 +I +P V + RI LA+QG+P +S G+E+FD FG T F Q I +RA+EGE++R Sbjct: 2 TILIPKDKVYEERITLASQGIPKTS-KVGFEIFD-TKDFGATDFDQNIKLIRAIEGELSR 59 Query: 142 TIQSISGIV 150 TI+S++ I+ Sbjct: 60 TIESLNPIL 68 >gi|149926067|ref|ZP_01914330.1| putative type III secretion protein [Limnobacter sp. MED105] gi|149825355|gb|EDM84566.1| putative type III secretion protein [Limnobacter sp. MED105] Length = 265 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 86/163 (52%), Gaps = 7/163 (4%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSS 106 L+ L + N I +L EA I S G ISVP M A L +QGLP + Sbjct: 28 SQLFSGLSQEEGNEIYSSLLEAGIPVEKSSGKEGVIISVPKQMSSDALRILQSQGLPRAK 87 Query: 107 SNSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 S E+F K + ++S ++E R + AL E+ T+ S+ G+++ARVHIV+P+ + Sbjct: 88 KTSMGEVFKKESM--ISSPLEERARYLYALSQELEETLMSMDGVLSARVHIVLPERANPG 145 Query: 166 KIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDV 207 ++ + +A+V ++ N S + + +R L+ ++P + G+V Sbjct: 146 EVLSPSSAAVFVKYENGSSFPAYVPRVRELIFKSIPGIT-GEV 187 >gi|220929468|ref|YP_002506377.1| flagellar M-ring protein FliF [Clostridium cellulolyticum H10] gi|219999796|gb|ACL76397.1| flagellar M-ring protein FliF [Clostridium cellulolyticum H10] Length = 523 Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 70/268 (26%), Positives = 125/268 (46%), Gaps = 20/268 (7%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +L LL F+K +TRI I+ V++V + + + F + P Y + +DV Sbjct: 8 LLKPLLDFWKGLDKSQKTRIFIITGVVVVSVGIGL---FLITRPTYTTVISNASSADVAA 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + L E I ++++D+ S I V +A L S+ S SG+ D +++ + Sbjct: 65 MQKILKEKGISYKLTDDKSGIIVNEKDSDEAHFEL------STGSKSGFTFADALSNLKI 118 Query: 123 TSFMQEITRVRAL--EGEIARTIQSISGIVAARVHIVMPD----MGSFRKIGARPTASVM 176 + + + E +IAR ++ I A V IV P+ + A+ ASV+ Sbjct: 119 NTTESDKKHIWQQLDESDIARQLKLFQNIEDANVTIVRPEKTLLIDDSNSKDAK--ASVV 176 Query: 177 IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQ 235 I + K AE+I LVA++V LD +VTV+D+ G +L + E + + + Sbjct: 177 ITPKDEISAKQAESIVKLVASSVEGLDPKNVTVVDNKGNILNIDSESGMDKTSTQYDMKK 236 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVV 263 ++++E N+ + L L D+F +A V Sbjct: 237 KYKNDLERNLREVLVDQL--DSFDTAKV 262 >gi|330975997|gb|EGH76063.1| flagellar MS-ring protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 153 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/97 (34%), Positives = 48/97 (49%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y LY L D +I L+ ANI++ + N ++ V S V +ARI LA Sbjct: 57 LWSQQPDYRPLYGSLAGMDSKQIMDTLTAANINYTVEPNSGALLVKSDDVQRARIQLAQA 116 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137 G + +N G+E+ DK G + FM+ R LEG Sbjct: 117 GGVQNDANIGFEILDKDQGLGTSQFMEATRYRRGLEG 153 >gi|84502358|ref|ZP_01000494.1| flagellar M-ring protein [Oceanicola batsensis HTCC2597] gi|84389170|gb|EAQ01967.1| flagellar M-ring protein [Oceanicola batsensis HTCC2597] Length = 246 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 67/130 (51%) Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINK 390 K +E NYEI T + +++R+S+AV+VN + G A + + + L +N+ Sbjct: 1 KTDEVVNYEIGNTQSETVREPGEIQRISVAVLVNGIYNIQDNGEVAYEERSEEELQRLNQ 60 Query: 391 IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL 450 +V AA G + +RGD++++ S+ F++ + V SF+ IL + ++ A+ L Sbjct: 61 LVQAAIGFDEQRGDSVSVDSLRFMDYSMDVGEPVSTSFVQILKDNMMAILRAVFALAVIA 120 Query: 451 LVTFLGLHAL 460 + G+ L Sbjct: 121 AILVFGVRPL 130 >gi|23011692|ref|ZP_00051978.1| COG1766: Flagellar biosynthesis/type III secretory pathway lipoprotein [Magnetospirillum magnetotacticum MS-1] Length = 285 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 81/155 (52%), Gaps = 3/155 (1%) Query: 262 VVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVP 321 V AEL+++ + R +DP+S+V RS + ++ S T E V+V +P + + Sbjct: 3 VAAELDLNRVESRSESFDPESRVVRSTQTR--SENSLTGGAEGQVSVGNELPGANQNQAQ 60 Query: 322 LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI 381 + +++ K EE +NYEI+ + T + +L RLS+AV+V+ G+ Q + Sbjct: 61 PQQK-DSSQKNEETTNYEISRVTKVETLEGGRLRRLSVAVLVDGVYAPGADGKPVYQPRP 119 Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 D+ + I +V A G + RGD + + ++ F E+ Sbjct: 120 DAEIERIAALVRTAVGYDKGRGDQVEVVNLRFAES 154 >gi|229172393|ref|ZP_04299952.1| Flagellar M-ring protein fliF [Bacillus cereus MM3] gi|228610864|gb|EEK68127.1| Flagellar M-ring protein fliF [Bacillus cereus MM3] Length = 524 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 79/373 (21%), Positives = 171/373 (45%), Gaps = 35/373 (9%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 SL L++ + +L ++ A +F Y +Y L +D I+ LS+ +D++ Sbjct: 10 SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDTDKQEITAELSKLGVDYQ 67 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132 ++ +G SI V + R + GLP +S SG E+ + +S G + +++ ++ Sbjct: 68 LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124 Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189 + LE +I R ++ A V I +P+ + F + A+ TA++ + + + + Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181 Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243 I+ +++AAVP + +V+V+DS +++ A+ + K + + Q I+ +++ Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEVEMQQQIEGKLKQ 241 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 +I+ L + ++ +N D E+ + ++ + SK Q ++ E Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355 A T +Q ++ +VP + N + K + NYEI+ K++ T + +L Sbjct: 297 GAET-KQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEID-KTVETIKKHPELT 354 Query: 356 RLSIAVVVNKGRL 368 + ++ V V+ L Sbjct: 355 KTNVVVWVDNDTL 367 >gi|332297609|ref|YP_004439531.1| flagellar M-ring protein FliF [Treponema brennaborense DSM 12168] gi|332180712|gb|AEE16400.1| flagellar M-ring protein FliF [Treponema brennaborense DSM 12168] Length = 568 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 105/437 (24%), Positives = 192/437 (43%), Gaps = 57/437 (13%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV---NRISVALSEANIDFRISDN 79 +IL +I V I + F P L+ + ++DV + I LS+ N++ ++ Sbjct: 25 IILFGIIAVVIAALVFMLRFSAKPATVPLF-NVAITDVSARDNILYRLSQENVEAEVNAA 83 Query: 80 GSSISVPSSMVGK-ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 G ISV + R L + L ++ + + LFD + +T F + + R++ Sbjct: 84 GV-ISVKDEQTARRMRSVLVREDLVPTNVDP-WALFD-TERWTITDFERNVNLQRSITQM 140 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY----KSAEAIRHL 194 + + I+++ I +A V I +P+ F TASV+I S K + I+ L Sbjct: 141 VKQHIEALDDIDSANVVITLPERTLFASDQNPTTASVIIYPKPGSDIADNKKKIQGIQKL 200 Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANE----MER-NILGKSLSIVQAIQHEIEMNINKAL 249 + AV L ++T+ DSTG+++ E ER +I+ K +++ ++ E ++ K+L Sbjct: 201 LLRAVEGLKEENITIADSTGRIVNDFEGMAASERVDIVAKEQKLIKQLEMEYRASVLKSL 260 Query: 250 AAFLGVDNFRSA-VVAELNMDTQQIREIVYDP-------------DSKVERSIRLSKDA- 294 G D R + +++M +Q+ Y P DS++ + +S + Sbjct: 261 QQIFGTDRVRDLNIKIDMDMSKKQVAGTEYSPIVIKADNPNTPYDDSELRDYLPISSETV 320 Query: 295 ---QRSETSQPESAVTVE-QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 PE VE QN P SD +S E K+ N INTK Sbjct: 321 TKVWTGTGYNPEGPAGVEGQNPPVYSDMSNLYGKSEETGVKQ----NNVINTKEY-QEEK 375 Query: 351 NYKLERLSIAVVV---------NKGRLTEVLGRSADQGK----IDS-YLAEINKIVSAAT 396 + ++R++++V + +KG+L VL + + +DS L+ K+V A Sbjct: 376 SPSIDRVTVSVNIDGTWRRTYDDKGQL--VLNPNGTIAREYVPVDSAVLSSAAKLVQDAI 433 Query: 397 GINSRRGDTITITSMDF 413 G N RGD++T+ ++ + Sbjct: 434 GYNRNRGDSVTVQNIQY 450 >gi|302387796|ref|YP_003823618.1| flagellar M-ring protein FliF [Clostridium saccharolyticum WM1] gi|302198424|gb|ADL05995.1| flagellar M-ring protein FliF [Clostridium saccharolyticum WM1] Length = 534 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 60/248 (24%), Positives = 117/248 (47%), Gaps = 13/248 (5%) Query: 48 YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 Y+ ++ + + +I L E +D++ NG I VP++ + + L ++G P S Sbjct: 44 YEVMFTSVGNEEAKQIIGKLQEEKVDYQYL-NGD-ILVPAAQMDVTKARLVSEGYPKSGF 101 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF--- 164 Y++F + T ++ ++ LE I TIQ G+ A V I + + + Sbjct: 102 T--YDVFKNNVNLMTTDSDRQTFKLYDLETRIGSTIQLFDGVKEAYVTIALGETSKYALS 159 Query: 165 --RKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM 222 A A V+++ + A++I+ L++ ++P + + +V+V D GK ++ + Sbjct: 160 EDDAQEASAQAVVVMKDGGSPTEEQAKSIQLLISRSIPGMVISNVSVFDGNGKEVSTDSG 219 Query: 223 ERNI-LGKSL-SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE-IVYD 279 E +I GK+ I + I+ +I + L G N R +V +NMD + IRE VY+ Sbjct: 220 EEDINSGKTAEEISKLIEDQIAAKVMNVLGPVYGNGNVRVSVKGTVNMD-KLIRESTVYN 278 Query: 280 PDSKVERS 287 K++ + Sbjct: 279 VPEKIDEN 286 >gi|291484172|dbj|BAI85247.1| hypothetical protein BSNT_02643 [Bacillus subtilis subsp. natto BEST195] Length = 196 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 79/158 (50%), Gaps = 4/158 (2%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + ++ +F+K+ + L + +++ S + I++ + F ++ LY L + Sbjct: 1 MQMKNKTSEFWKNRSKLQK---ILMVSALAAIIIIGIIISVFASNSKMAPLYKDLSAEEA 57 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +I L + +S+ G+ ISVP V ++ +AA+GLP + S Y F + F Sbjct: 58 GQIKKELDAKKVPNELSNGGTVISVPEDQVDSLKVQMAAEGLPKTGS-IDYSFFGQNAGF 116 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 GLT ++ +V+A + E++ I + GI ++V I + Sbjct: 117 GLTDNEFDMVKVKATQTELSNLINEMDGIKNSKVMITL 154 >gi|167770218|ref|ZP_02442271.1| hypothetical protein ANACOL_01561 [Anaerotruncus colihominis DSM 17241] gi|167667540|gb|EDS11670.1| hypothetical protein ANACOL_01561 [Anaerotruncus colihominis DSM 17241] Length = 530 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 65/267 (24%), Positives = 118/267 (44%), Gaps = 18/267 (6%) Query: 15 TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDN-LYVKLEVSDVNRISVALSEANID 73 T L R + +I S +++ +N P + L+ + + ++ L + + Sbjct: 17 TGLPRKKKIIFTSSAAGIVVIAAVVALILNRPSGNQVLFPDMTREESQQVYAKLQDMGVQ 76 Query: 74 FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ-EITRV 132 I+ +G + VP+ A +AAQG P S N Y+ F + + + F Q ++ ++ Sbjct: 77 AEINRDGQVV-VPTEDWDNAIFEMAAQGYPKSEPN--YDFFLSNSGWTKSEFEQRQVLKM 133 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--- 189 +A E + + + GI +A V +P+ + I + AI + K AE Sbjct: 134 QA-EDRMRQILMGQDGIESADVSFSIPETSDY--IWDQNNKEESTAAITIKMRKGAELSP 190 Query: 190 ----AIRHLVAAAVPNLDMGDVTVLD-STGKLLTANEMERNIL--GKSLSIVQAIQHEIE 242 A+++L A ++PNL +V V+D +TG + A + E + K L + I IE Sbjct: 191 ERVQAVKNLAAYSIPNLTADNVVVVDAATGVQMEAADDESASMFSDKRLEFERQIARGIE 250 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMD 269 NI + L+ GVD + EL+ D Sbjct: 251 DNIIRILSPRYGVDGVTAVARVELDYD 277 >gi|222095370|ref|YP_002529430.1| flagellar ms-ring protein [Bacillus cereus Q1] gi|221239428|gb|ACM12138.1| flagellar M-ring protein [Bacillus cereus Q1] Length = 524 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 78/373 (20%), Positives = 168/373 (45%), Gaps = 35/373 (9%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 SL L++ + +L ++ A +F Y +Y L +D I+ LS+ +D++ Sbjct: 10 SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132 ++ +G SI V + R + GLP +S SG E+ + +S G + +++ ++ Sbjct: 68 LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124 Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189 + LE +I R ++ A V I +P+ + F + A+ TA++ + + + + Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181 Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSLSIVQAIQHEIEM 243 I+ +++AAVP + +V+V+DS +++ E + K + + I+ +++ Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHATSSSSYEKEVEMQHQIEGKLKQ 241 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 +I+ L + ++ +N D E+ + ++ + SK Q ETS + Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQE-ETSTAQ 295 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355 +Q ++ +VP + N + K + NYEI+ K++ T + +L Sbjct: 296 EGADTKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEID-KTVETIKKHPELT 354 Query: 356 RLSIAVVVNKGRL 368 + ++ V V+ L Sbjct: 355 KTNVVVWVDNDTL 367 >gi|206974945|ref|ZP_03235860.1| putative flagellar M-ring protein FliF [Bacillus cereus H3081.97] gi|206746964|gb|EDZ58356.1| putative flagellar M-ring protein FliF [Bacillus cereus H3081.97] Length = 524 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 80/385 (20%), Positives = 175/385 (45%), Gaps = 38/385 (9%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 +++L F+S L L++ + +L ++ A +F Y +Y L +D I Sbjct: 1 MEKLKNVFQS---LKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + LS+ +D++++ +G SI V + R + GLP +S SG E+ + +S G + Sbjct: 56 TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSS 112 Query: 124 SFMQEITRV----RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIR 178 +++ ++ + LE +I R ++ A V I +P+ + F + A+ TA++ + Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVG 169 Query: 179 AINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSL 231 + + + I+ +++AAVP + +V+V+DS +++ A+ + K + Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + I+ +++ +I+ L + ++ +N D E+ + ++ + S Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRS 284 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTK 343 K Q ETS + +Q ++ +VP + N + K + NYEI+ K Sbjct: 285 KQEQE-ETSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEID-K 342 Query: 344 SIATTHDNYKLERLSIAVVVNKGRL 368 ++ T + +L + ++ V V+ L Sbjct: 343 TVETIKKHPELTKTNVVVWVDNDTL 367 >gi|229155317|ref|ZP_04283428.1| Flagellar M-ring protein fliF [Bacillus cereus ATCC 4342] gi|228628242|gb|EEK84958.1| Flagellar M-ring protein fliF [Bacillus cereus ATCC 4342] Length = 524 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 80/372 (21%), Positives = 166/372 (44%), Gaps = 33/372 (8%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 SL L++ + +L ++ A +F Y +Y L +D I+ LS+ +D++ Sbjct: 10 SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF--DKVNSFGLTSFMQEITRVR 133 ++ +G SI V + R + GLP +S SG E+ + S M++I R Sbjct: 68 LATDG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLESSLGSSEQDKKMKQIVGTR 125 Query: 134 A-LEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE-- 189 LE +I R ++ A V I +P+ + F + A+ TA++ + + + + Sbjct: 126 KQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQVA 182 Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEMN 244 I+ +++AAVP + +V+V+DS +++ A+ + K + + I+ +++ + Sbjct: 183 GIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEVEMQHQIEGKLKQD 242 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 I+ L + ++ +N D E+ + ++ + SK Q ++ E Sbjct: 243 IDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQEG 297 Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLER 356 A T +Q ++ +VP + N + K + NYEI+ K++ T + +L + Sbjct: 298 AET-KQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEID-KTVETIKKHPELTK 355 Query: 357 LSIAVVVNKGRL 368 ++ V V+ L Sbjct: 356 TNVVVWVDNDTL 367 >gi|228933030|ref|ZP_04095893.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826631|gb|EEM72402.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 524 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 78/373 (20%), Positives = 170/373 (45%), Gaps = 35/373 (9%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 SL L++ + +L ++ A +F Y +Y L +D I+ LS+ +D++ Sbjct: 10 SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132 ++ +G SI V + R + GLP +S SG E+ + +S G + +++ ++ Sbjct: 68 LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124 Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189 + LE +I R ++ A V I +P+ + F + A+ TA++ + + + + Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181 Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243 I+ +++AAVP + +V+V+DS +++ A+ + K + + Q I+ +++ Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEVEMQQQIEGKLKQ 241 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 +I+ L + ++ +N D E+ + ++ + SK Q E+S + Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQE-ESSTAQ 295 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355 +Q ++ +VP + N + K + NYEI+ K++ T + +L Sbjct: 296 EGAEAKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEID-KTVETIKKHPELT 354 Query: 356 RLSIAVVVNKGRL 368 + ++ V V+ L Sbjct: 355 KTNVVVWVDNDTL 367 >gi|229058380|ref|ZP_04196764.1| Flagellar M-ring protein fliF [Bacillus cereus AH603] gi|229132559|ref|ZP_04261408.1| Flagellar M-ring protein fliF [Bacillus cereus BDRD-ST196] gi|228650905|gb|EEL06891.1| Flagellar M-ring protein fliF [Bacillus cereus BDRD-ST196] gi|228719889|gb|EEL71479.1| Flagellar M-ring protein fliF [Bacillus cereus AH603] Length = 526 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 81/373 (21%), Positives = 170/373 (45%), Gaps = 35/373 (9%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 SL L++ + +L + A +F Y +Y L +D I+ LS+ +D++ Sbjct: 10 SLKTWHKLVIGAALLA--IATGALLYFTLPDKYVVVYQNLNDTDKQEITAELSKLGVDYQ 67 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132 ++ +G SI V + R + GLP +S SG E+ + +S G + +++ ++ Sbjct: 68 LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124 Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189 + LE +I R +I A V I +P+ + F + A+ TA++ + + + + Sbjct: 125 KKQLEQDIVRNFATIE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181 Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERN---ILGKSLSIVQAIQHEIEM 243 I+ +++AAVP + +V+V+DS +++ A+E N K + + I+ +++ Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGIISKGADEAHSNSSSSYEKEVEMQHQIEGKLKQ 241 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 +I+ L + ++ +N D E+ + ++ + SK Q ++ E Sbjct: 242 DIDATLMTMFKSNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355 A T +Q ++ +VP + N + K + NYEI+ K++ T + +L Sbjct: 297 GADT-KQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEID-KTVETIKKHPELT 354 Query: 356 RLSIAVVVNKGRL 368 + ++ V V+ L Sbjct: 355 KTNVVVWVDNDTL 367 >gi|163939552|ref|YP_001644436.1| flagellar MS-ring protein [Bacillus weihenstephanensis KBAB4] gi|163861749|gb|ABY42808.1| flagellar M-ring protein FliF [Bacillus weihenstephanensis KBAB4] Length = 524 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 81/373 (21%), Positives = 170/373 (45%), Gaps = 35/373 (9%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 SL L++ + +L + A +F Y +Y L +D I+ LS+ +D++ Sbjct: 10 SLKTWHKLVIGAALLA--IATGALLYFTLPDKYVVVYQNLNDTDKQEITAELSKLGVDYQ 67 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132 ++ +G SI V + R + GLP +S SG E+ + +S G + +++ ++ Sbjct: 68 LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124 Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189 + LE +I R +I A V I +P+ + F + A+ TA++ + + + + Sbjct: 125 KKQLEQDIVRNFATIE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181 Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERN---ILGKSLSIVQAIQHEIEM 243 I+ +++AAVP + +V+V+DS +++ A+E N K + + I+ +++ Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGIISKGADEAHSNSSSSYEKEVEMQHQIEGKLKQ 241 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 +I+ L + ++ +N D E+ + ++ + SK Q ++ E Sbjct: 242 DIDATLMTMFKSNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355 A T +Q ++ +VP + N + K + NYEI+ K++ T + +L Sbjct: 297 GADT-KQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEID-KTVETIKKHPELT 354 Query: 356 RLSIAVVVNKGRL 368 + ++ V V+ L Sbjct: 355 KTNVVVWVDNDTL 367 >gi|167566308|ref|ZP_02359224.1| lipoprotein transmembrane protein [Burkholderia oklahomensis EO147] Length = 258 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 84/167 (50%), Gaps = 12/167 (7%) Query: 51 LYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSMVGKARIHLAAQGLPSSS 106 LY L D N + AL + +D + D G + ++V + KA L A+GLP++ Sbjct: 39 LYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPATR 98 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMGS 163 + LF K GL S E RVR + G E++ T+ I G+V ARVHIV+P+ Sbjct: 99 YDDLGALFKK---DGLVSTPTE-ERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDP 154 Query: 164 FRKIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209 F ++ +ASV I+ N ++ I++LV +V L +V+V Sbjct: 155 FAQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSV 201 >gi|239628992|ref|ZP_04672023.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519138|gb|EEQ59004.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 537 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 66/288 (22%), Positives = 130/288 (45%), Gaps = 28/288 (9%) Query: 13 SGTSLGRTRIL------ILASVILVPIMLFMAARFFVN---SPHYDNLYVKLEVSDVNRI 63 SG G R+L +A+ I +++ +AA +N S +Y L+ + + N + Sbjct: 11 SGEKGGIGRVLDTGKKKAVAAGITAAVVIALAASVLLNTKKSGNYVALFPGISKEENNEV 70 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L+ ++ R + G ++VP +G + ++ G P ++ +++F F T Sbjct: 71 LTVLNARGVEARRNSEGE-VTVPEDQLGDIMLDMSELGYPKTAL--PFDIFSDNMGFTTT 127 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMIRAIN 181 F + + L+ I RT++ ++G+ A V + +PD ++ + G+ T S+ + + Sbjct: 128 EFEKRQYLLMNLQDRIERTLKDMTGVKNAIVTLNVPDESNYVWDEGGSNSTGSISL-TLM 186 Query: 182 PSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS------LS 232 PS S E AI++LVA +VP L +VTV+++ T EM + +G + L Sbjct: 187 PSYELSPEKVSAIKNLVADSVPRLLPENVTVVNAE----TMQEMVADDIGTTSYGLNRLD 242 Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP 280 ++ +E I L D R + ++ D ++ Y+P Sbjct: 243 FEAKVEERLENKIKNVLTLAYSPDKLRVSATVVIDYDRMITEDLHYEP 290 >gi|229160710|ref|ZP_04288702.1| Flagellar M-ring protein fliF [Bacillus cereus R309803] gi|228622725|gb|EEK79559.1| Flagellar M-ring protein fliF [Bacillus cereus R309803] Length = 524 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 79/373 (21%), Positives = 169/373 (45%), Gaps = 35/373 (9%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 SL L++ + +L ++ A +F Y +Y L +D I+ LS+ +D++ Sbjct: 10 SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132 ++ +G SI V + R + GLP +S SG E+ + +S G + +++ ++ Sbjct: 68 LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124 Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189 + LE +I R ++ A V I +P+ + F + A+ TA++ + + + + Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181 Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243 I+ +++AAVP + +V+V+DS L++ AN + K + + I+ +++ Sbjct: 182 AGIQQMISAAVPGVKPEEVSVIDSKKGLISKGADAANTNSSSSYEKEVEMQHQIEGKLKQ 241 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 +I+ L + ++ +N D E+ + ++ + SK Q E+S + Sbjct: 242 DIDATLMTMFKPNEYKVNTKVTVNYD-----EVTRQSEKYGDKGVLRSKQEQE-ESSTAQ 295 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355 +Q ++ +VP + N + K + NYEI+ K++ T + +L Sbjct: 296 EGADAKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEID-KTVETIKKHPELT 354 Query: 356 RLSIAVVVNKGRL 368 + ++ V V+ L Sbjct: 355 KTNVVVWVDNDTL 367 >gi|2105148|gb|AAB57899.1| FliF [Treponema denticola] Length = 567 Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 70/268 (26%), Positives = 122/268 (45%), Gaps = 33/268 (12%) Query: 53 VKLEVSDVN---RISVALSEANIDFRISDNG--SSISVPSSMVGKARIHLAAQGLPSSSS 107 + + ++DV+ RI + ++E N+ IS +G S V ++ I L +P ++S Sbjct: 54 IDMAITDVDLRDRIILRINEGNVKTSISSDGIISVADVEATARRMRTILLREDLIPKNTS 113 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 + FD V + T F +EI RA+ E+ R ++++ I A V + +P+ F Sbjct: 114 --PWAFFD-VERYSRTDFEREIDVRRAITEEVKRHLKALDDIDDANVVVRIPEKALFESE 170 Query: 168 GARPTASVMIRAINPSVY----KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME 223 TA+V+I S K E I+ ++ AVP L D+T+ D++G L E+ Sbjct: 171 QLPATATVVITPAPGSDISTNRKKIEGIQKMLRLAVPGLKNEDITISDASGIPLNDFEIM 230 Query: 224 RN-----ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVV------AELNMDTQQ 272 ++ ++ K + ++ + NI L G D R V +E + DT + Sbjct: 231 KDADRLTLIEKQQKFIAKLERQYGANILTPLQKIYGEDRVRDINVKIDMDMSERSADTTE 290 Query: 273 IR---------EIVYDPDSKVERSIRLS 291 IR E YD DS+V +S+ +S Sbjct: 291 IRPTVIKEDNPETSYD-DSQVVQSVTVS 317 >gi|229102345|ref|ZP_04233053.1| Flagellar M-ring protein fliF [Bacillus cereus Rock3-28] gi|228680992|gb|EEL35161.1| Flagellar M-ring protein fliF [Bacillus cereus Rock3-28] Length = 524 Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 76/372 (20%), Positives = 168/372 (45%), Gaps = 33/372 (8%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 SL L++ + +L ++ A +F Y +Y L +D I+ LS+ +D++ Sbjct: 10 SLKTWHKLVIGAALLA--VVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132 ++ +G SI V + R + GLP +S SG E+ + +S G + +++ ++ Sbjct: 68 LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124 Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189 + LE +I R ++ A V I +P+ + F + A+ TA++ + + + + Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181 Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERN---ILGKSLSIVQAIQHEIEM 243 I+ +++AAVP + +V+V+DS +++ A+E N K + + I+ +++ Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGIISKGADEAHSNSSSSYEKEVEMQHQIEGKLKQ 241 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 +I+ L + ++ +N D E+ + ++ + SK Q ++ E Sbjct: 242 DIDATLMTMFKSNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296 Query: 304 SA-------VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 A +T ++P+ + + + + NYEI+ K++ T + +L + Sbjct: 297 GADTKQGAGITANGDVPNYGTNNNQNGKVVYDNKNGNKIENYEID-KTVETIKKHPELTK 355 Query: 357 LSIAVVVNKGRL 368 ++ V V+ L Sbjct: 356 TNVVVWVDNDTL 367 >gi|325473786|gb|EGC76974.1| FliF protein [Treponema denticola F0402] Length = 567 Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 71/268 (26%), Positives = 122/268 (45%), Gaps = 34/268 (12%) Query: 53 VKLEVSDVN---RISVALSEANIDFRISDNGSSISVPSSMVGKA--RIHLAAQGLPSSSS 107 + + ++DV+ RI + ++E N+ IS +G ISV + I L +P ++S Sbjct: 54 IDMAITDVDLRDRIILRINEENVKTTISSDGI-ISVADEATARRMRTILLREDLIPKNTS 112 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 + FD V + T F +EI RA+ E+ R ++++ I A V + +P+ F Sbjct: 113 --PWAFFD-VERYSRTDFEREIDVRRAITEEVKRHLKALDDIDDANVVVRIPEKALFESE 169 Query: 168 GARPTASVMIRAINPSVY----KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME 223 TA+V+I S K E I+ ++ AVP L D+T+ D++G L E+ Sbjct: 170 QLPATATVVITPAPGSDISTNRKKIEGIQKMLRLAVPGLKNEDITISDASGIPLNDFEIM 229 Query: 224 RN-----ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVV------AELNMDTQQ 272 ++ ++ K + ++ + NI L G D R V +E + DT + Sbjct: 230 KDADRLTLIEKQQKFIAKLERQYGANILTPLQKIYGEDRVRDINVKIDMDMSERSADTTE 289 Query: 273 IR---------EIVYDPDSKVERSIRLS 291 IR E YD DS+V +S+ +S Sbjct: 290 IRPTVIKEDNPETSYD-DSQVVQSVTVS 316 >gi|317407862|gb|EFV87788.1| BscJ protein [Achromobacter xylosoxidans C54] Length = 284 Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 60/207 (28%), Positives = 100/207 (48%), Gaps = 17/207 (8%) Query: 9 QFFKSGTSLGRTRILILASVILVPIML-FMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 +F + G G R+ ++ S++L+ ML AR +L + + N + L Sbjct: 7 EFRRLGARRGYRRVWLIGSLLLLLAMLTACGARV--------DLLAAVPEGEANEVLSVL 58 Query: 68 SEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 +A I + S G +I+V + V +A L A+GLP + ++F K ++S Sbjct: 59 LDAGIAAQKSAGKAGVAINVQADQVAQALAVLRARGLPRERFDGMGQIFRKEGL--VSSP 116 Query: 126 MQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 ++E R + AL E+A T+ + G++AARVH+V+P+ G + TA+V I+ P Sbjct: 117 LEERARYIYALSQELANTLSQMDGVIAARVHVVLPERGGVGEEATPSTAAVFIK-TQPGY 175 Query: 185 YKSA--EAIRHLVAAAVPNLDMGDVTV 209 A IR LV A+P L V+V Sbjct: 176 ALDALLPQIRRLVIHAIPGLSEDKVSV 202 >gi|229096232|ref|ZP_04227205.1| Flagellar M-ring protein fliF [Bacillus cereus Rock3-29] gi|229115187|ref|ZP_04244597.1| Flagellar M-ring protein fliF [Bacillus cereus Rock1-3] gi|228668327|gb|EEL23759.1| Flagellar M-ring protein fliF [Bacillus cereus Rock1-3] gi|228687192|gb|EEL41097.1| Flagellar M-ring protein fliF [Bacillus cereus Rock3-29] Length = 524 Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 76/372 (20%), Positives = 168/372 (45%), Gaps = 33/372 (8%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 SL L++ + +L ++ A +F Y +Y L +D I+ LS+ +D++ Sbjct: 10 SLKTWHKLVIGAALLA--VVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132 ++ +G SI V + R + GLP +S SG E+ + +S G + +++ ++ Sbjct: 68 LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124 Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189 + LE +I R ++ A V I +P+ + F + A+ TA++ + + + + Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181 Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERN---ILGKSLSIVQAIQHEIEM 243 I+ +++AAVP + +V+V+DS +++ A+E N K + + I+ +++ Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGIISKGADEAHSNSSSSYEKEVEMQHQIEGKLKQ 241 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 +I+ L + ++ +N D E+ + ++ + SK Q ++ E Sbjct: 242 DIDATLMTMFKSNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296 Query: 304 SA-------VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 A +T ++P+ + + + + NYEI+ K++ T + +L + Sbjct: 297 GADTKQGAGITANGDVPNYGTNNNQNGKVVYDNKNGNKIENYEID-KTVETIKKHPELTK 355 Query: 357 LSIAVVVNKGRL 368 ++ V V+ L Sbjct: 356 TNVVVWVDNDTL 367 >gi|42526724|ref|NP_971822.1| flagellar MS-ring protein [Treponema denticola ATCC 35405] gi|41817039|gb|AAS11733.1| flagellar M-ring protein FliF [Treponema denticola ATCC 35405] Length = 567 Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 71/268 (26%), Positives = 122/268 (45%), Gaps = 34/268 (12%) Query: 53 VKLEVSDVN---RISVALSEANIDFRISDNGSSISVPSSMVGKA--RIHLAAQGLPSSSS 107 + + ++DV+ RI + ++E N+ IS +G ISV + I L +P ++S Sbjct: 54 IDMAITDVDLRDRIILRINEENVKTTISSDGI-ISVADEATARRMRTILLREDLIPKNTS 112 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 + FD V + T F +EI RA+ E+ R ++++ I A V + +P+ F Sbjct: 113 --PWAFFD-VERYSRTDFEREIDVRRAITEEVKRHLKALDDIDDANVVVRIPEKALFESE 169 Query: 168 GARPTASVMIRAINPSVY----KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME 223 TA+V+I S K E I+ ++ AVP L D+T+ D++G L E+ Sbjct: 170 QLPATATVVITPAPGSDISTNRKKIEGIQKMLRLAVPGLKNEDITISDASGIPLNDFEIM 229 Query: 224 RN-----ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVV------AELNMDTQQ 272 ++ ++ K + ++ + NI L G D R V +E + DT + Sbjct: 230 KDADRLTLIEKQQKFIAKLERQYGANILTPLQKIYGEDRVRDINVKIDMDMSERSADTTE 289 Query: 273 IR---------EIVYDPDSKVERSIRLS 291 IR E YD DS+V +S+ +S Sbjct: 290 IRPTVIKEDNPETSYD-DSQVVQSVTVS 316 >gi|196033494|ref|ZP_03100906.1| putative flagellar M-ring protein FliF [Bacillus cereus W] gi|195993928|gb|EDX57884.1| putative flagellar M-ring protein FliF [Bacillus cereus W] Length = 524 Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 78/373 (20%), Positives = 170/373 (45%), Gaps = 35/373 (9%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 SL L++ + +L ++ A +F Y +Y L +D I+ LS+ +D++ Sbjct: 10 SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132 ++ +G SI V + R + GLP +S SG E+ + +S G + +++ ++ Sbjct: 68 LATDG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124 Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189 + LE +I R ++ A V I +P+ + F + A+ TA++ + + + + Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181 Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243 I+ +++AAVP + +V+V+DS +++ A+ + K + + I+ +++ Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEVEMQHQIEGKLKQ 241 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 +I+ L + ++ +N D E+ + ++ + SK Q ++ E Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355 A T +Q ++ +VP + N + K + NYEI+ K++ T + +L Sbjct: 297 GAET-KQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEID-KTVETIKKHPELT 354 Query: 356 RLSIAVVVNKGRL 368 + ++ V V+ L Sbjct: 355 KTNVVVWVDNDTL 367 >gi|225375317|ref|ZP_03752538.1| hypothetical protein ROSEINA2194_00942 [Roseburia inulinivorans DSM 16841] gi|225212806|gb|EEG95160.1| hypothetical protein ROSEINA2194_00942 [Roseburia inulinivorans DSM 16841] Length = 536 Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 60/288 (20%), Positives = 129/288 (44%), Gaps = 15/288 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +LD++L+++K + +T ++ + +V+LV + + A V+ P L ++ + Sbjct: 10 VLDRILEWWKKFNTKQKTLLISIVAVVLVALAILAAV---VSKPKMVTLVTCATTAESGQ 66 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + L NI + +S +G + V A I L +P+S + ++FD G Sbjct: 67 VKNILDSENISYELSADGLAFQVNEKDYANASIVLGTNDIPTSGTKLS-DVFDG----GF 121 Query: 123 TSFMQEITRVRA--LEGEIARTIQSISGIVAARVHIVMPDM-GSFRKIGARPTASVMIRA 179 +S + T+ LE A ++++S + AA V + +PD G+ G + + ++ Sbjct: 122 SSTEADKTKKYKLYLEEYYAEKLETLSNVDAAAVTLDLPDEDGTILSKGEQAYVTAILTL 181 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS---LSIVQA 236 + A + +A V N D +V +LD++ +L + + + ++ G + LS+ Sbjct: 182 NGTMDDEQAAGLAKYLATNVGNDDTSNVLILDNSSNVLFSGQDDTSVTGNANNQLSLKTK 241 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPDSK 283 +++++ + L DN + +N D T + Y PD + Sbjct: 242 AENQVKGQVKDVLVGSSLFDNVEVGLNLAMNFDQTTESTHEYYAPDGQ 289 >gi|152975158|ref|YP_001374675.1| flagellar MS-ring protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023910|gb|ABS21680.1| flagellar M-ring protein FliF [Bacillus cytotoxicus NVH 391-98] Length = 521 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 73/369 (19%), Positives = 167/369 (45%), Gaps = 34/369 (9%) Query: 21 RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80 +++I A+++ + + +F Y +Y L +D I+ LS+ +D+++ ++G Sbjct: 16 KMVIGAAILAIGTGALL---YFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQLVNDG 72 Query: 81 SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS----FMQEITRVRALE 136 + I VP+ R + GLP +S SG E+ + +S G + Q + + LE Sbjct: 73 A-IKVPTKDAPWIRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQLVGTKKQLE 129 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE--AIRH 193 +I R +I +A V I +P+ + F + A+ TA++ + + + I+ Sbjct: 130 QDIVRNFATIE---SANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTEDQVAGIQQ 186 Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEMNINKA 248 +++AAV + +V+V+DS +++ + + K + + Q I+++++ +I+ Sbjct: 187 MISAAVSGVKPEEVSVIDSKKGIVSKGADASTHASSSSYEKEVEMQQQIENKLKQDIDAT 246 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA--- 305 L + F+ +N D E+ + ++ + S+ Q+ ++ E A Sbjct: 247 LMTMFKANEFKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSRQDQQERSTAQEGADAK 301 Query: 306 ----VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 +T +P+ + + + + + NYEI+ K++ T + +L + ++ V Sbjct: 302 QGAGITANGEVPNYGTNNNQNGKVVYDNNNGNKIENYEID-KTVETIKKHPELTKTNVVV 360 Query: 362 VVNKGRLTE 370 V+ LT+ Sbjct: 361 WVDNDTLTK 369 >gi|49184575|ref|YP_027827.1| flagellar MS-ring protein [Bacillus anthracis str. Sterne] gi|65319014|ref|ZP_00391973.1| COG1766: Flagellar biosynthesis/type III secretory pathway lipoprotein [Bacillus anthracis str. A2012] gi|227815496|ref|YP_002815505.1| putative flagellar M-ring protein FliF [Bacillus anthracis str. CDC 684] gi|254683235|ref|ZP_05147096.1| flagellar MS-ring protein [Bacillus anthracis str. CNEVA-9066] gi|254734587|ref|ZP_05192299.1| flagellar MS-ring protein [Bacillus anthracis str. Western North America USA6153] gi|254740996|ref|ZP_05198684.1| flagellar MS-ring protein [Bacillus anthracis str. Kruger B] gi|254755239|ref|ZP_05207273.1| flagellar MS-ring protein [Bacillus anthracis str. Vollum] gi|254759775|ref|ZP_05211799.1| flagellar MS-ring protein [Bacillus anthracis str. Australia 94] gi|49178502|gb|AAT53878.1| secretory protein of YscJ/FliF family (flagellar M-ring protein) [Bacillus anthracis str. Sterne] gi|227005826|gb|ACP15569.1| putative flagellar M-ring protein FliF [Bacillus anthracis str. CDC 684] Length = 460 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 78/373 (20%), Positives = 170/373 (45%), Gaps = 35/373 (9%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 SL L++ + +L ++ A +F Y +Y L +D I+ LS+ +D++ Sbjct: 10 SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132 ++ +G SI V + R + GLP +S SG E+ + +S G + +++ ++ Sbjct: 68 LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124 Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189 + LE +I R ++ A V I +P+ + F + A+ TA++ + + + + Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181 Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243 I+ +++AAVP + +V+V+DS +++ A+ + K + + I+ +++ Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEVEMQHQIEGKLKQ 241 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 +I+ L + ++ +N D E+ + ++ + SK Q ++ E Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355 A T +Q ++ +VP + N + K + NYEI+ K++ T + +L Sbjct: 297 GAET-KQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEID-KTVETIKKHPELT 354 Query: 356 RLSIAVVVNKGRL 368 + ++ V V+ L Sbjct: 355 KTNVVVWVDNDTL 367 >gi|228984830|ref|ZP_04145002.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775028|gb|EEM23422.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 524 Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 78/373 (20%), Positives = 170/373 (45%), Gaps = 35/373 (9%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 SL L++ + +L ++ A +F Y +Y L +D I+ LS+ +D++ Sbjct: 10 SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132 ++ +G SI V + R + GLP +S SG E+ + +S G + +++ ++ Sbjct: 68 LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124 Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189 + LE +I R ++ A V I +P+ + F + A+ TA++ + + + + Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181 Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243 I+ +++AAVP + +V+V+DS +++ A+ + K + + I+ +++ Sbjct: 182 TGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEVEMQHQIEGKLKQ 241 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 +I+ L + ++ +N D E+ + ++ + SK Q ++ E Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355 A T +Q ++ +VP + N + K + NYEI+ K++ T + +L Sbjct: 297 GAET-KQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEID-KTVETIKKHPELT 354 Query: 356 RLSIAVVVNKGRL 368 + ++ V V+ L Sbjct: 355 KTNVVVWVDNDTL 367 >gi|332526232|ref|ZP_08402363.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Rubrivivax benzoatilyticus JA2] gi|332110068|gb|EGJ10696.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Rubrivivax benzoatilyticus JA2] Length = 239 Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 7/167 (4%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDF---RISDNGSSISVPSSMVGKARIHLAAQGLPSS 105 + LY +L+ + N + L+ A ID R+ ++ V +A L A G P Sbjct: 33 EELYAQLDEREANEMVALLTHAGIDAAKQRVDGGQFALRVGGGEFARAVQVLHAAGYPRE 92 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 S +F K F T + + AL E+A T+Q+I G+V ARVH+ +P+ F Sbjct: 93 GHESLGTMFKK-EGFVTTQLEERARFMHALSQELAGTLQNIDGVVLARVHLAVPEKRRFA 151 Query: 166 KIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVL 210 + P+A+ + + P V + + +I+ LV A+ L VTV+ Sbjct: 152 EK-PEPSAAAVFLKVRPGVDLAPQIGSIKALVVNAIEGLPYEQVTVV 197 >gi|196045123|ref|ZP_03112356.1| putative flagellar M-ring protein FliF [Bacillus cereus 03BB108] gi|196024125|gb|EDX62799.1| putative flagellar M-ring protein FliF [Bacillus cereus 03BB108] Length = 524 Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 78/373 (20%), Positives = 170/373 (45%), Gaps = 35/373 (9%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 SL L++ + +L ++ A +F Y +Y L +D I+ LS+ +D++ Sbjct: 10 SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132 ++ +G SI V + R + GLP +S SG E+ + +S G + +++ ++ Sbjct: 68 LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124 Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189 + LE +I R ++ A V I +P+ + F + A+ TA++ + + + + Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181 Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243 I+ +++AAVP + +V+V+DS +++ A+ + K + + I+ +++ Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEVEMQHQIEGKLKQ 241 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 +I+ L + ++ +N D E+ + ++ + SK Q ++ E Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355 A T +Q ++ +VP + N + K + NYEI+ K++ T + +L Sbjct: 297 GAET-KQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEID-KTVETIKKHPELT 354 Query: 356 RLSIAVVVNKGRL 368 + ++ V V+ L Sbjct: 355 KTNVVVWVDNDTL 367 >gi|2935534|gb|AAC38609.1| BscJ [Bordetella bronchiseptica] Length = 274 Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 18/161 (11%) Query: 59 DVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 + N + AL EA I + G ++SVP+ V ++ L A GLP + +F K Sbjct: 43 EANEVLAALLEAGIAAQKQSGKAGYAVSVPAEAVARSLEILRASGLPREQFDGMGRIFRK 102 Query: 117 VNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 ++S ++E R + AL E+A T+ I G+++ARVH+V+P+ G+ + TA V Sbjct: 103 EGL--VSSPLEERARYIYALSQELADTLSQIDGVLSARVHVVLPERGAVGEPATPSTAGV 160 Query: 176 MIRAINPSVYKSAEA-------IRHLVAAAVPNLDMGDVTV 209 ++ Y+ ++ IR LV A+P L V+V Sbjct: 161 FLK------YRDGQSLDALVPEIRKLVTHAIPGLAEDRVSV 195 >gi|33600610|ref|NP_888170.1| putative type III secretion protein [Bordetella bronchiseptica RB50] gi|33568209|emb|CAE32122.1| putative type III secretion protein [Bordetella bronchiseptica RB50] Length = 274 Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 18/161 (11%) Query: 59 DVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 + N + AL EA I + G ++SVP+ V ++ L A GLP + +F K Sbjct: 43 EANEVLAALLEAGIAAQKQSGKAGYAVSVPAEAVARSLEILRASGLPREQFDGMGRIFRK 102 Query: 117 VNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 ++S ++E R + AL E+A T+ I G+++ARVH+V+P+ G+ + TA V Sbjct: 103 EGL--VSSPLEERARYIYALSQELADTLSQIDGVLSARVHVVLPERGAVGEPATPSTAGV 160 Query: 176 MIRAINPSVYKSAEA-------IRHLVAAAVPNLDMGDVTV 209 ++ Y+ ++ IR LV A+P L V+V Sbjct: 161 FLK------YRDGQSLDALVPEIRKLVTHAIPGLAEDRVSV 195 >gi|229121298|ref|ZP_04250529.1| Flagellar M-ring protein fliF [Bacillus cereus 95/8201] gi|228662143|gb|EEL17752.1| Flagellar M-ring protein fliF [Bacillus cereus 95/8201] Length = 524 Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 78/373 (20%), Positives = 170/373 (45%), Gaps = 35/373 (9%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 SL L++ + +L ++ A +F Y +Y L +D I+ LS+ +D++ Sbjct: 10 SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132 ++ +G SI V + R + GLP +S SG E+ + +S G + +++ ++ Sbjct: 68 LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124 Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189 + LE +I R ++ A V I +P+ + F + A+ TA++ + + + + Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181 Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243 I+ +++AAVP + +V+V+DS +++ A+ + K + + I+ +++ Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEVEMQHQIEGKLKQ 241 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 +I+ L + ++ +N D E+ + ++ + SK Q ++ E Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355 A T +Q ++ +VP + N + K + NYEI+ K++ T + +L Sbjct: 297 GAET-KQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEID-KTVETIKKHPELT 354 Query: 356 RLSIAVVVNKGRL 368 + ++ V V+ L Sbjct: 355 KTNVVVWVDNDTL 367 >gi|228914325|ref|ZP_04077940.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228845319|gb|EEM90355.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 524 Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 78/373 (20%), Positives = 170/373 (45%), Gaps = 35/373 (9%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 SL L++ + +L ++ A +F Y +Y L +D I+ LS+ +D++ Sbjct: 10 SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132 ++ +G SI V + R + GLP +S SG E+ + +S G + +++ ++ Sbjct: 68 LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124 Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189 + LE +I R ++ A V I +P+ + F + A+ TA++ + + + + Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181 Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243 I+ +++AAVP + +V+V+DS +++ A+ + K + + I+ +++ Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEVEMQHQIEGKLKQ 241 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 +I+ L + ++ +N D E+ + ++ + SK Q ++ E Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355 A T +Q ++ +VP + N + K + NYEI+ K++ T + +L Sbjct: 297 GAET-KQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEID-KTVETIKKHPELT 354 Query: 356 RLSIAVVVNKGRL 368 + ++ V V+ L Sbjct: 355 KTNVVVWVDNDTL 367 >gi|49477313|ref|YP_035866.1| flagellar MS-ring protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52143713|ref|YP_083117.1| flagellar MS-ring protein [Bacillus cereus E33L] gi|196038966|ref|ZP_03106273.1| putative flagellar M-ring protein FliF [Bacillus cereus NVH0597-99] gi|218902861|ref|YP_002450695.1| putative flagellar M-ring protein FliF [Bacillus cereus AH820] gi|225863605|ref|YP_002748983.1| putative flagellar M-ring protein FliF [Bacillus cereus 03BB102] gi|228926782|ref|ZP_04089850.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228945349|ref|ZP_04107704.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229183938|ref|ZP_04311154.1| Flagellar M-ring protein fliF [Bacillus cereus BGSC 6E1] gi|254723823|ref|ZP_05185609.1| flagellar MS-ring protein [Bacillus anthracis str. A1055] gi|301053283|ref|YP_003791494.1| flagellar M-ring protein [Bacillus anthracis CI] gi|49328869|gb|AAT59515.1| flagellar M-ring protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51977182|gb|AAU18732.1| flagellar M-ring protein [Bacillus cereus E33L] gi|196030111|gb|EDX68711.1| putative flagellar M-ring protein FliF [Bacillus cereus NVH0597-99] gi|218537965|gb|ACK90363.1| putative flagellar M-ring protein FliF [Bacillus cereus AH820] gi|225787831|gb|ACO28048.1| putative flagellar M-ring protein FliF [Bacillus cereus 03BB102] gi|228599590|gb|EEK57194.1| Flagellar M-ring protein fliF [Bacillus cereus BGSC 6E1] gi|228814321|gb|EEM60587.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228832895|gb|EEM78464.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|300375452|gb|ADK04356.1| flagellar M-ring protein [Bacillus cereus biovar anthracis str. CI] Length = 524 Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 78/373 (20%), Positives = 170/373 (45%), Gaps = 35/373 (9%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 SL L++ + +L ++ A +F Y +Y L +D I+ LS+ +D++ Sbjct: 10 SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132 ++ +G SI V + R + GLP +S SG E+ + +S G + +++ ++ Sbjct: 68 LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124 Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189 + LE +I R ++ A V I +P+ + F + A+ TA++ + + + + Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181 Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243 I+ +++AAVP + +V+V+DS +++ A+ + K + + I+ +++ Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEVEMQHQIEGKLKQ 241 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 +I+ L + ++ +N D E+ + ++ + SK Q ++ E Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355 A T +Q ++ +VP + N + K + NYEI+ K++ T + +L Sbjct: 297 GAET-KQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEID-KTVETIKKHPELT 354 Query: 356 RLSIAVVVNKGRL 368 + ++ V V+ L Sbjct: 355 KTNVVVWVDNDTL 367 >gi|300117335|ref|ZP_07055125.1| flagellar MS-ring protein [Bacillus cereus SJ1] gi|298725170|gb|EFI65822.1| flagellar MS-ring protein [Bacillus cereus SJ1] Length = 520 Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 78/373 (20%), Positives = 170/373 (45%), Gaps = 35/373 (9%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 SL L++ + +L ++ A +F Y +Y L +D I+ LS+ +D++ Sbjct: 10 SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132 ++ +G SI V + R + GLP +S SG E+ + +S G + +++ ++ Sbjct: 68 LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124 Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189 + LE +I R ++ A V I +P+ + F + A+ TA++ + + + + Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181 Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243 I+ +++AAVP + +V+V+DS +++ A+ + K + + I+ +++ Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEVEMQHQIEGKLKQ 241 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 +I+ L + ++ +N D E+ + ++ + SK Q ++ E Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355 A T +Q ++ +VP + N + K + NYEI+ K++ T + +L Sbjct: 297 GAET-KQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEID-KTVETIKKHPELT 354 Query: 356 RLSIAVVVNKGRL 368 + ++ V V+ L Sbjct: 355 KTNVVVWVDNDTL 367 >gi|217959230|ref|YP_002337778.1| flagellar MS-ring protein [Bacillus cereus AH187] gi|229138446|ref|ZP_04267035.1| Flagellar M-ring protein fliF [Bacillus cereus BDRD-ST26] gi|217064704|gb|ACJ78954.1| putative flagellar M-ring protein FliF [Bacillus cereus AH187] gi|228644983|gb|EEL01226.1| Flagellar M-ring protein fliF [Bacillus cereus BDRD-ST26] Length = 524 Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 80/385 (20%), Positives = 177/385 (45%), Gaps = 38/385 (9%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 +++L F+S L L++++ +L ++ A +F Y +Y L +D I Sbjct: 1 MEKLKNVFQS---LKTWHKLVISAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + LS+ +D++++ +G SI V + R + GLP +S SG E+ + +S G + Sbjct: 56 TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSS 112 Query: 124 SFMQEITRV----RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIR 178 +++ ++ + LE +I R ++ A V I +P+ + F + A+ TA++ + Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVG 169 Query: 179 AINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSL 231 + + + I+ +++AAVP + +V+V+DS +++ A+ + K + Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + I+ +++ +I+ L + ++ +N D E+ + ++ + S Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRS 284 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTK 343 K Q ++ E A T +Q ++ +VP + N + K + NYEI+ K Sbjct: 285 KQEQEESSTAQEGADT-KQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEID-K 342 Query: 344 SIATTHDNYKLERLSIAVVVNKGRL 368 ++ T + +L + ++ V V+ L Sbjct: 343 TVETIKKHPELTKTNVVVWVDNDTL 367 >gi|324325764|gb|ADY21024.1| flagellar MS-ring protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 524 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 78/373 (20%), Positives = 169/373 (45%), Gaps = 35/373 (9%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 SL L++ + +L ++ A +F Y +Y L +D I+ LS+ +D++ Sbjct: 10 SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132 ++ +G SI V + R + GLP +S SG E+ + +S G + +++ ++ Sbjct: 68 LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124 Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189 + LE +I R ++ A V I +P+ + F + A+ TA++ + + + + Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181 Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSLSIVQAIQHEIEM 243 I+ +++AAVP + +V+V+DS +++ E + K + + I+ +++ Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHATSSSSYEKEVEMQHQIEGKLKQ 241 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 +I+ L + ++ +N D E+ + ++ + SK Q ++ E Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355 A T +Q ++ +VP + N + K + NYEI+ K++ T + +L Sbjct: 297 GADT-KQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEID-KTVETIKKHPELT 354 Query: 356 RLSIAVVVNKGRL 368 + ++ V V+ L Sbjct: 355 KTNVVVWVDNDTL 367 >gi|33596836|ref|NP_884479.1| putative type III secretion protein [Bordetella parapertussis 12822] gi|33573537|emb|CAE37528.1| putative type III secretion protein [Bordetella parapertussis] Length = 274 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 18/161 (11%) Query: 59 DVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 + N + AL EA I + G ++SVP+ V ++ L A GLP + +F K Sbjct: 43 EANEVLAALLEAGIAAQKQSGKAGYAVSVPAEAVARSLEILRASGLPREQFDGMGRIFRK 102 Query: 117 VNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 ++S ++E R + AL E+A T+ I G+++ARVH+V+P+ G+ + TA V Sbjct: 103 EGL--VSSPLEERARYIYALSQELADTLSQIDGVLSARVHVVLPERGAVGEPATPSTAGV 160 Query: 176 MIRAINPSVYKSAEA-------IRHLVAAAVPNLDMGDVTV 209 ++ Y+ ++ IR LV A+P L V+V Sbjct: 161 FLK------YRDGQSLDALVPEIRKLVTHAIPGLAEDRVSV 195 >gi|229029426|ref|ZP_04185509.1| Flagellar M-ring protein fliF [Bacillus cereus AH1271] gi|228731885|gb|EEL82784.1| Flagellar M-ring protein fliF [Bacillus cereus AH1271] Length = 524 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 80/385 (20%), Positives = 176/385 (45%), Gaps = 38/385 (9%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 +++L F+S L L++ + +L ++ A +F Y +Y L +D I Sbjct: 1 MEKLKNVFQS---LKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + LS+ +D++++ +G SI V + R + GLP +S SG E+ + +S G + Sbjct: 56 TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSS 112 Query: 124 SFMQEITRV----RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIR 178 +++ ++ + LE +I R +I A V I +P+ + F + A+ TA++ + Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAAIE---TANVQITLPEKETIFDEEKAKGTAAITVG 169 Query: 179 AINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSL 231 + + + ++ +++AAVP + +V+V+DS +++ A+ + K + Sbjct: 170 VKRGQLLTADQVAGVQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + I+ +++ +I+ L + ++ +N D E+ + ++ + S Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRS 284 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTK 343 K Q ++ E A T +Q ++ +VP + N + K + NYEI+ K Sbjct: 285 KQEQEESSTAQEGADT-KQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEID-K 342 Query: 344 SIATTHDNYKLERLSIAVVVNKGRL 368 ++ T + +L + ++ V V+ L Sbjct: 343 TVETIKKHPELTKTNVVVWVDNDTL 367 >gi|33593247|ref|NP_880891.1| putative type III secretion protein [Bordetella pertussis Tohama I] gi|29603227|emb|CAC79572.1| bscJ [Bordetella pertussis Tohama I] gi|33563622|emb|CAE42523.1| putative type III secretion protein [Bordetella pertussis Tohama I] gi|332382656|gb|AEE67503.1| putative type III secretion protein [Bordetella pertussis CS] Length = 274 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 18/161 (11%) Query: 59 DVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 + N + AL EA I + G ++SVP+ V ++ L A GLP + +F K Sbjct: 43 EANEVLAALLEAGIAAQKQSGKAGYAVSVPAEAVARSLEILRASGLPREQFDGMGRIFRK 102 Query: 117 VNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 ++S ++E R + AL E+A T+ I G+++ARVH+V+P+ G+ + TA V Sbjct: 103 EGL--VSSPLEERARYIYALSQELADTLSQIDGVLSARVHVVLPERGAVGEPATPSTAGV 160 Query: 176 MIRAINPSVYKSAEA-------IRHLVAAAVPNLDMGDVTV 209 ++ Y+ ++ IR LV A+P L V+V Sbjct: 161 FLK------YRDGQSLDALVPEIRKLVTHAIPGLAEDRVSV 195 >gi|229090707|ref|ZP_04221940.1| Flagellar M-ring protein fliF [Bacillus cereus Rock3-42] gi|228692649|gb|EEL46375.1| Flagellar M-ring protein fliF [Bacillus cereus Rock3-42] Length = 524 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 78/373 (20%), Positives = 169/373 (45%), Gaps = 35/373 (9%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 SL L++ + +L ++ A +F Y +Y L +D I+ LS+ +D++ Sbjct: 10 SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132 ++ +G SI V + R + GLP +S SG E+ + +S G + +++ ++ Sbjct: 68 LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124 Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189 + LE +I R ++ A V I +P+ + F + A+ TA++ + + + + Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181 Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243 I+ +++AAVP + +V+V+DS +++ A+ K + + I+ +++ Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSTSYEKEVEMQHQIEGKLKQ 241 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 +I+ L + ++ +N D E+ + ++ + SK Q ++ E Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355 A T +Q ++ +VP + N + K + NYEI+ K++ T + +L Sbjct: 297 GAET-KQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEID-KTVETIKKHPELT 354 Query: 356 RLSIAVVVNKGRL 368 + ++ V V+ L Sbjct: 355 KTNVVVWVDNDTL 367 >gi|42780839|ref|NP_978086.1| flagellar MS-ring protein [Bacillus cereus ATCC 10987] gi|42736759|gb|AAS40694.1| flagellar M-ring protein [Bacillus cereus ATCC 10987] Length = 524 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 80/385 (20%), Positives = 175/385 (45%), Gaps = 38/385 (9%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 +++L F+S L L++ + +L ++ A +F Y +Y L +D I Sbjct: 1 MEKLKNVFQS---LKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + LS+ +D++++ +G SI V + R + GLP +S SG E+ + +S G + Sbjct: 56 TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSS 112 Query: 124 SFMQEITRV----RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIR 178 +++ ++ + LE +I R ++ A V I +P+ + F + A+ TA++ + Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVG 169 Query: 179 AINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSL 231 + + + I+ +++AAVP + +V+V+DS +++ E + K + Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHATSSSSYEKEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + I+ +++ +I+ L + ++ +N D E+ + ++ + S Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRS 284 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTK 343 K Q ++ E A T +Q ++ +VP + N + K + NYEI+ K Sbjct: 285 KQEQEESSTAQEGADT-KQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEID-K 342 Query: 344 SIATTHDNYKLERLSIAVVVNKGRL 368 ++ T + +L + ++ V V+ L Sbjct: 343 TVETIKKHPELTKTNVVVWVDNDTL 367 >gi|75761142|ref|ZP_00741134.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218896679|ref|YP_002445090.1| putative flagellar M-ring protein FliF [Bacillus cereus G9842] gi|228900328|ref|ZP_04064558.1| Flagellar M-ring protein fliF [Bacillus thuringiensis IBL 4222] gi|74491370|gb|EAO54594.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218541808|gb|ACK94202.1| putative flagellar M-ring protein FliF [Bacillus cereus G9842] gi|228859363|gb|EEN03793.1| Flagellar M-ring protein fliF [Bacillus thuringiensis IBL 4222] Length = 525 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 75/368 (20%), Positives = 168/368 (45%), Gaps = 25/368 (6%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 SL L++ + +L ++ A +F Y +Y L +D I+ LS+ +D++ Sbjct: 10 SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDTDKQEITAELSKLGVDYQ 67 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132 ++ +G SI V + R + GLP +S SG E+ + +S G + +++ ++ Sbjct: 68 LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124 Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189 + LE +I R ++ A V I +P+ + F + A+ TA++ + + + + Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181 Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243 I+ +++AAVP + +V+V+DS +++ A+ + K + + ++ +++ Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEVEMQHQLEGKLKQ 241 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD---AQRSETS 300 +I+ L + ++ +N D + R+ D V RS + ++ AQ + Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-EVTRQSEKYGDKGVLRSKQEQEESSTAQEGTDT 300 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 + + +T +P+ + + N + NYEI+ K++ T + +L + ++ Sbjct: 301 KQSAGITANGEVPNYGTNNNQNGKVVYNNKNGNKIENYEID-KTVETIKKHPELTKTNVV 359 Query: 361 VVVNKGRL 368 V V+ L Sbjct: 360 VWVDNDTL 367 >gi|228907379|ref|ZP_04071237.1| Flagellar M-ring protein fliF [Bacillus thuringiensis IBL 200] gi|228852240|gb|EEM97036.1| Flagellar M-ring protein fliF [Bacillus thuringiensis IBL 200] Length = 524 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 77/373 (20%), Positives = 170/373 (45%), Gaps = 35/373 (9%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 SL L++ + +L ++ A +F Y +Y L +D I+ LS+ +D++ Sbjct: 10 SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDTDKQEITAELSKLGVDYQ 67 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132 ++ +G SI V + R + GLP +S SG E+ + +S G + +++ ++ Sbjct: 68 LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124 Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189 + LE +I R ++ A V I +P+ + F + A+ TA++ + + + + Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181 Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243 I+ +++AAVP + +V+V+DS +++ A+ + K + + ++ +++ Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGTDEAHSSSSSSYEKEVEMQHQLEGKLKQ 241 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 +I+ L + ++ +N D E+ + ++ + SK Q ++ E Sbjct: 242 DIDATLMTMFKSNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355 A T +Q ++ +VP + N + K + NYEI+ K++ T + +L Sbjct: 297 GADT-KQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEID-KTVETIKKHPELT 354 Query: 356 RLSIAVVVNKGRL 368 + ++ V V+ L Sbjct: 355 KTNVVVWVDNDTL 367 >gi|313905127|ref|ZP_07838496.1| flagellar M-ring protein FliF [Eubacterium cellulosolvens 6] gi|313470030|gb|EFR65363.1| flagellar M-ring protein FliF [Eubacterium cellulosolvens 6] Length = 563 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 62/289 (21%), Positives = 128/289 (44%), Gaps = 25/289 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFV----NSPHYDNLYVKLE 56 M IL++L + ++ +++ R R+LI ++LV + F+A + + Y L+ L Sbjct: 1 MKILNKLKETWQQLSAMAR-RLLI---IVLVGAVAFVAIGIVLLNQKKTTEYTTLFTGLN 56 Query: 57 VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 + I + E + +I VP K R + ++G P S Y ++ Sbjct: 57 QEESREIVSMIQEEGKQYLYDAGSGTIQVPVEQADKLRAEILSKGYPQSGFT--YSMYVG 114 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF------------ 164 + T +E + L+ + TI+ G+ A+V I D + Sbjct: 115 NSGIMATESDKEQYTLYDLQDRLGATIRLFDGVRDAKVTIAQADDDGYVLDEDGDTKSNS 174 Query: 165 -RKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLD-STGKLLTANEM 222 + A + V ++ + K+A+AIR+LVA +V ++ +V+V D +T + + N Sbjct: 175 DDDVNASASVVVTMKRGSELTEKNADAIRNLVARSVRGINFTNVSVFDAATMQEIGGNAD 234 Query: 223 ERNILGKSLS-IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDT 270 + + ++++ + + +++ I N+ K LA ++N AV +L+ T Sbjct: 235 DESANSEAVNELTKQVENNIAANVKKVLAKLYHMENVEVAVRGKLDTST 283 >gi|229069298|ref|ZP_04202588.1| Flagellar M-ring protein fliF [Bacillus cereus F65185] gi|228713785|gb|EEL65670.1| Flagellar M-ring protein fliF [Bacillus cereus F65185] Length = 524 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 77/373 (20%), Positives = 170/373 (45%), Gaps = 35/373 (9%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 SL L++ + +L ++ A +F Y +Y L +D I+ LS+ +D++ Sbjct: 10 SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDTDKQEITAELSKLGVDYQ 67 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132 ++ +G SI V + R + GLP +S SG E+ + +S G + +++ ++ Sbjct: 68 LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124 Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189 + LE +I R ++ A V I +P+ + F + A+ TA++ + + + + Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181 Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243 I+ +++AAVP + +V+V+DS +++ A+ + K + + ++ +++ Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGTDEAHSSSSSSYEKEVEMQHQLEGKLKQ 241 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 +I+ L + ++ +N D E+ + ++ + SK Q ++ E Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355 A T +Q ++ +VP + N + K + NYEI+ K++ T + +L Sbjct: 297 GADT-KQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEID-KTVETIKKHPELT 354 Query: 356 RLSIAVVVNKGRL 368 + ++ V V+ L Sbjct: 355 KTNVVVWVDNDTL 367 >gi|218232102|ref|YP_002366431.1| flagellar MS-ring protein [Bacillus cereus B4264] gi|218160059|gb|ACK60051.1| putative flagellar M-ring protein FliF [Bacillus cereus B4264] Length = 524 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 77/373 (20%), Positives = 170/373 (45%), Gaps = 35/373 (9%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 SL L++ + +L ++ A +F Y +Y L +D I+ LS+ +D++ Sbjct: 10 SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDTDKQEITAELSKLGVDYQ 67 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132 ++ +G SI V + R + GLP +S SG E+ + +S G + +++ ++ Sbjct: 68 LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124 Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189 + LE +I R ++ A V I +P+ + F + A+ TA++ + + + + Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181 Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243 I+ +++AAVP + +V+V+DS +++ A+ + K + + ++ +++ Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEVEMQHQLEGKLKQ 241 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 +I+ L + ++ +N D E+ + ++ + SK Q ++ E Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355 A T +Q ++ +VP + N + K + NYEI+ K++ T + +L Sbjct: 297 GADT-KQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEID-KTVETIKKHPELT 354 Query: 356 RLSIAVVVNKGRL 368 + ++ V V+ L Sbjct: 355 KTNVVVWVDNDTL 367 >gi|229189843|ref|ZP_04316854.1| Flagellar M-ring protein fliF [Bacillus cereus ATCC 10876] gi|228593651|gb|EEK51459.1| Flagellar M-ring protein fliF [Bacillus cereus ATCC 10876] Length = 524 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 77/373 (20%), Positives = 170/373 (45%), Gaps = 35/373 (9%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 SL L++ + +L ++ A +F Y +Y L +D I+ LS+ +D++ Sbjct: 10 SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDTDKQEITAELSKLGVDYQ 67 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132 ++ +G SI V + R + GLP +S SG E+ + +S G + +++ ++ Sbjct: 68 LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124 Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189 + LE +I R ++ A V I +P+ + F + A+ TA++ + + + + Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181 Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243 I+ +++AAVP + +V+V+DS +++ A+ + K + + ++ +++ Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEVEMQHQLEGKLKQ 241 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 +I+ L + ++ +N D E+ + ++ + SK Q ++ E Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355 A T +Q ++ +VP + N + K + NYEI+ K++ T + +L Sbjct: 297 GADT-KQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEID-KTVETIKKHPELT 354 Query: 356 RLSIAVVVNKGRL 368 + ++ V V+ L Sbjct: 355 KTNVVVWVDNDTL 367 >gi|206970714|ref|ZP_03231666.1| putative flagellar M-ring protein FliF [Bacillus cereus AH1134] gi|228964729|ref|ZP_04125836.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar sotto str. T04001] gi|229178155|ref|ZP_04305526.1| Flagellar M-ring protein fliF [Bacillus cereus 172560W] gi|206734350|gb|EDZ51520.1| putative flagellar M-ring protein FliF [Bacillus cereus AH1134] gi|228605285|gb|EEK62735.1| Flagellar M-ring protein fliF [Bacillus cereus 172560W] gi|228794979|gb|EEM42478.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar sotto str. T04001] Length = 524 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 77/373 (20%), Positives = 170/373 (45%), Gaps = 35/373 (9%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 SL L++ + +L ++ A +F Y +Y L +D I+ LS+ +D++ Sbjct: 10 SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDTDKQEITAELSKLGVDYQ 67 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132 ++ +G SI V + R + GLP +S SG E+ + +S G + +++ ++ Sbjct: 68 LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124 Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189 + LE +I R ++ A V I +P+ + F + A+ TA++ + + + + Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181 Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243 I+ +++AAVP + +V+V+DS +++ A+ + K + + ++ +++ Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEVEMQHQLEGKLKQ 241 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 +I+ L + ++ +N D E+ + ++ + SK Q ++ E Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355 A T +Q ++ +VP + N + K + NYEI+ K++ T + +L Sbjct: 297 GADT-KQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEID-KTVETIKKHPELT 354 Query: 356 RLSIAVVVNKGRL 368 + ++ V V+ L Sbjct: 355 KTNVVVWVDNDTL 367 >gi|229195959|ref|ZP_04322712.1| Flagellar M-ring protein fliF [Bacillus cereus m1293] gi|228587518|gb|EEK45583.1| Flagellar M-ring protein fliF [Bacillus cereus m1293] Length = 524 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 80/384 (20%), Positives = 172/384 (44%), Gaps = 36/384 (9%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 +++L F+S L L++ + +L ++ A +F Y +Y L +D I Sbjct: 1 MEKLKNVFQS---LKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF--DKVNSFG 121 + LS+ +D++++ +G SI V + R + GLP +S SG E+ + S Sbjct: 56 TAELSKLGVDYQLATDG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLESSLGSSE 113 Query: 122 LTSFMQEITRVRA-LEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRA 179 M++I + LE +I R ++ A V I +P+ + F + A+ TA++ + Sbjct: 114 QDKRMKQIVGTKKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGV 170 Query: 180 INPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLS 232 + + + ++ +++AAVP + +V+V+DS +++ A+ + K + Sbjct: 171 KRGQLLMADQVAGVQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEVE 230 Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292 + I+ +++ +I+ L + ++ +N D E+ + ++ + SK Sbjct: 231 MQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSK 285 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKS 344 Q ++ E A T +Q ++ +VP + N + K + NYEI+ K+ Sbjct: 286 QEQEESSTAQEGADT-KQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEID-KT 343 Query: 345 IATTHDNYKLERLSIAVVVNKGRL 368 + T + +L + ++ V V+ L Sbjct: 344 VETIKKHPELTKTNVVVWVDNDTL 367 >gi|228958026|ref|ZP_04119762.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar pakistani str. T13001] gi|228801651|gb|EEM48532.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar pakistani str. T13001] Length = 524 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 77/373 (20%), Positives = 170/373 (45%), Gaps = 35/373 (9%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 SL L++ + +L ++ A +F Y +Y L +D I+ LS+ +D++ Sbjct: 10 SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132 ++ +G SI V + R + GLP +S SG E+ + +S G + +++ ++ Sbjct: 68 LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124 Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189 + LE +I R ++ A V I +P+ + F + A+ TA++ + + + + Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181 Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243 I+ +++AAVP + +V+V+DS +++ A+ + K + + ++ +++ Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEVEMQHQLEGKLKQ 241 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 +I+ L + ++ +N D E+ + ++ + SK Q ++ E Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355 A T +Q ++ +VP + N + K + NYEI+ K++ T + +L Sbjct: 297 GADT-KQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEID-KTVETIKKHPELT 354 Query: 356 RLSIAVVVNKGRL 368 + ++ V V+ L Sbjct: 355 KTNVVVWVDNDTL 367 >gi|167924750|ref|ZP_02511841.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei BCC215] Length = 243 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 12/167 (7%) Query: 51 LYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSMVGKARIHLAAQGLPSSS 106 LY L D N + AL + +D + D G + ++V + KA L A+GLP++ Sbjct: 38 LYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPATR 97 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMGS 163 + LF K GL S E RVR + G E++ T+ I G+V ARVHIV+P+ Sbjct: 98 YDDLGALFKK---DGLVSTPTE-ERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDP 153 Query: 164 FRKIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209 ++ +ASV I+ N ++ I++LV +V L +V+V Sbjct: 154 LAQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSV 200 >gi|167907276|ref|ZP_02494481.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei NCTC 13177] Length = 244 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 12/167 (7%) Query: 51 LYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSMVGKARIHLAAQGLPSSS 106 LY L D N + AL + +D + D G + ++V + KA L A+GLP++ Sbjct: 38 LYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPATR 97 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMGS 163 + LF K GL S E RVR + G E++ T+ I G+V ARVHIV+P+ Sbjct: 98 YDDLGALFKK---DGLVSTPTE-ERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDP 153 Query: 164 FRKIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209 ++ +ASV I+ N ++ I++LV +V L +V+V Sbjct: 154 LAQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSV 200 >gi|167850348|ref|ZP_02475856.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei B7210] Length = 242 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 12/167 (7%) Query: 51 LYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSMVGKARIHLAAQGLPSSS 106 LY L D N + AL + +D + D G + ++V + KA L A+GLP++ Sbjct: 38 LYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPATR 97 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMGS 163 + LF K GL S E RVR + G E++ T+ I G+V ARVHIV+P+ Sbjct: 98 YDDLGALFKK---DGLVSTPTE-ERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDP 153 Query: 164 FRKIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209 ++ +ASV I+ N ++ I++LV +V L +V+V Sbjct: 154 LAQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSV 200 >gi|228920457|ref|ZP_04083802.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839087|gb|EEM84383.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 524 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 77/373 (20%), Positives = 170/373 (45%), Gaps = 35/373 (9%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 SL L++ + +L ++ A +F Y +Y L +D I+ LS+ +D++ Sbjct: 10 SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132 ++ +G SI V + R + GLP +S SG E+ + +S G + +++ ++ Sbjct: 68 LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124 Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189 + LE +I R ++ A V I +P+ + F + A+ TA++ + + + + Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181 Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243 I+ +++AAVP + +V+V+DS +++ A+ + K + + ++ +++ Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEVEMQHQLEGKLKQ 241 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 +I+ L + ++ +N D E+ + ++ + SK Q ++ E Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355 A T +Q ++ +VP + N + K + NYEI+ K++ T + +L Sbjct: 297 GADT-KQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEID-KTVETIKKHPELT 354 Query: 356 RLSIAVVVNKGRL 368 + ++ V V+ L Sbjct: 355 KTNVVVWVDNDTL 367 >gi|228952126|ref|ZP_04114221.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228807658|gb|EEM54182.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 524 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 76/369 (20%), Positives = 169/369 (45%), Gaps = 35/369 (9%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 SL L++ + +L ++ A +F Y +Y L +D I+ LS+ +D++ Sbjct: 10 SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132 ++ +G SI V + R + GLP +S SG E+ + +S G + +++ ++ Sbjct: 68 LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124 Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189 + LE +I R ++ A V I +P+ + F + A+ TA++ + + + + Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181 Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243 I+ +++AAVP + +V+V+DS +++ A+ + K + + ++ +++ Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEVEMQHQLEGKLKQ 241 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 +I+ L + ++ +N D E+ + ++ + SK Q ++ E Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355 A T +Q ++ +VP + N + K + NYEI+ K++ T + +L Sbjct: 297 GADT-KQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEID-KTVETIKKHPELT 354 Query: 356 RLSIAVVVN 364 + ++ V V+ Sbjct: 355 KTNVVVWVD 363 >gi|229149948|ref|ZP_04278176.1| Flagellar M-ring protein fliF [Bacillus cereus m1550] gi|228633629|gb|EEK90230.1| Flagellar M-ring protein fliF [Bacillus cereus m1550] Length = 524 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 77/373 (20%), Positives = 170/373 (45%), Gaps = 35/373 (9%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 SL L++ + +L ++ A +F Y +Y L +D I+ LS+ +D++ Sbjct: 10 SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132 ++ +G SI V + R + GLP +S SG E+ + +S G + +++ ++ Sbjct: 68 LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124 Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189 + LE +I R ++ A V I +P+ + F + A+ TA++ + + + + Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181 Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243 I+ +++AAVP + +V+V+DS +++ A+ + K + + ++ +++ Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGTDEAHSSSSSSYEKEVEMQHQLEGKLKQ 241 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 +I+ L + ++ +N D E+ + ++ + SK Q ++ E Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355 A T +Q ++ +VP + N + K + NYEI+ K++ T + +L Sbjct: 297 GADT-KQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEID-KTVETIKKHPELT 354 Query: 356 RLSIAVVVNKGRL 368 + ++ V V+ L Sbjct: 355 KTNVVVWVDNDTL 367 >gi|167743335|ref|ZP_02416109.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 14] Length = 230 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 12/167 (7%) Query: 51 LYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSMVGKARIHLAAQGLPSSS 106 LY L D N + AL + +D + D G + ++V + KA L A+GLP++ Sbjct: 38 LYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPATR 97 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMGS 163 + LF K GL S E RVR + G E++ T+ I G+V ARVHIV+P+ Sbjct: 98 YDDLGALFKK---DGLVSTPTE-ERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDP 153 Query: 164 FRKIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209 ++ +ASV I+ N ++ I++LV +V L +V+V Sbjct: 154 LAQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSV 200 >gi|229166587|ref|ZP_04294339.1| Flagellar M-ring protein fliF [Bacillus cereus AH621] gi|228616841|gb|EEK73914.1| Flagellar M-ring protein fliF [Bacillus cereus AH621] Length = 524 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 78/373 (20%), Positives = 169/373 (45%), Gaps = 35/373 (9%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 SL L++ + +L + A +F Y +Y L +D I+ LS+ +D++ Sbjct: 10 SLKTWHKLVIGAALLA--IATGALLYFTLPDKYVVVYQNLNDTDKQEITAELSKLGVDYQ 67 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132 ++ +G SI V + R + GLP +S SG E+ + +S G + +++ ++ Sbjct: 68 LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124 Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189 + LE +I R ++ A V I +P+ + F + A+ TA++ + + + + Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181 Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243 I+ +++AAVP + +V+V+DS +++ A+ + K + + I+ +++ Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGIISKGTDEAHSNSSSSYEKEVEMQHQIEGKLKQ 241 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 +I+ L + ++ +N D E+ + ++ + SK Q ++ E Sbjct: 242 DIDATLMTMFKSNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355 A T +Q ++ +VP + N + K + NYEI+ K++ T + +L Sbjct: 297 GADT-KQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEID-KTVETIKKHPELT 354 Query: 356 RLSIAVVVNKGRL 368 + ++ V V+ L Sbjct: 355 KTNVVVWVDNDTL 367 >gi|229078928|ref|ZP_04211480.1| Flagellar M-ring protein fliF [Bacillus cereus Rock4-2] gi|228704342|gb|EEL56776.1| Flagellar M-ring protein fliF [Bacillus cereus Rock4-2] Length = 524 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 77/373 (20%), Positives = 170/373 (45%), Gaps = 35/373 (9%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 SL L++ + +L ++ A +F Y +Y L +D I+ LS+ +D++ Sbjct: 10 SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132 ++ +G SI V + R + GLP +S SG E+ + +S G + +++ ++ Sbjct: 68 LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124 Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189 + LE +I R ++ A V I +P+ + F + A+ TA++ + + + + Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181 Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243 I+ +++AAVP + +V+V+DS +++ A+ + K + + ++ +++ Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEVEMQHQLEGKLKQ 241 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 +I+ L + ++ +N D E+ + ++ + SK Q ++ E Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355 A T +Q ++ +VP + N + K + NYEI+ K++ T + +L Sbjct: 297 GADT-KQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEID-KTVETIKKHPELT 354 Query: 356 RLSIAVVVNKGRL 368 + ++ V V+ L Sbjct: 355 KTNVVVWVDNDTL 367 >gi|228938860|ref|ZP_04101460.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971741|ref|ZP_04132362.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978350|ref|ZP_04138727.1| Flagellar M-ring protein fliF [Bacillus thuringiensis Bt407] gi|228781367|gb|EEM29568.1| Flagellar M-ring protein fliF [Bacillus thuringiensis Bt407] gi|228787831|gb|EEM35789.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820709|gb|EEM66734.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939360|gb|AEA15256.1| flagellar MS-ring protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 524 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 77/373 (20%), Positives = 170/373 (45%), Gaps = 35/373 (9%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 SL L++ + +L ++ A +F Y +Y L +D I+ LS+ +D++ Sbjct: 10 SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDTDKQEITAELSKLGVDYQ 67 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132 ++ +G SI V + R + GLP +S SG E+ + +S G + +++ ++ Sbjct: 68 LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124 Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189 + LE +I R ++ A V I +P+ + F + A+ TA++ + + + + Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181 Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243 I+ +++AAVP + +V+V+DS +++ A+ + K + + ++ +++ Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGTDEAHSSSSSSYEKEVEMQHQLEGKLKQ 241 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 +I+ L + ++ +N D E+ + ++ + SK Q ++ E Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355 A T +Q ++ +VP + N + K + NYEI+ K++ T + +L Sbjct: 297 GADT-KQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEID-KTVETIKKHPELT 354 Query: 356 RLSIAVVVNKGRL 368 + ++ V V+ L Sbjct: 355 KTNVVVWVDNDTL 367 >gi|229043500|ref|ZP_04191210.1| Flagellar M-ring protein fliF [Bacillus cereus AH676] gi|228725878|gb|EEL77125.1| Flagellar M-ring protein fliF [Bacillus cereus AH676] Length = 524 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 77/373 (20%), Positives = 170/373 (45%), Gaps = 35/373 (9%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 SL L++ + +L ++ A +F Y +Y L +D I+ LS+ +D++ Sbjct: 10 SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132 ++ +G SI V + R + GLP +S SG E+ + +S G + +++ ++ Sbjct: 68 LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124 Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189 + LE +I R ++ A V I +P+ + F + A+ TA++ + + + + Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181 Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243 I+ +++AAVP + +V+V+DS +++ A+ + K + + ++ +++ Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEVEMQHQLEGKLKQ 241 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 +I+ L + ++ +N D E+ + ++ + SK Q ++ E Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355 A T +Q ++ +VP + N + K + NYEI+ K++ T + +L Sbjct: 297 GADT-KQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEID-KTVETIKKHPELT 354 Query: 356 RLSIAVVVNKGRL 368 + ++ V V+ L Sbjct: 355 KTNVVVWVDNDTL 367 >gi|30019791|ref|NP_831422.1| flagellar MS-ring protein [Bacillus cereus ATCC 14579] gi|229127072|ref|ZP_04256071.1| Flagellar M-ring protein fliF [Bacillus cereus BDRD-Cer4] gi|229144358|ref|ZP_04272764.1| Flagellar M-ring protein fliF [Bacillus cereus BDRD-ST24] gi|29895336|gb|AAP08623.1| Flagellar M-ring protein fliF [Bacillus cereus ATCC 14579] gi|228639145|gb|EEK95569.1| Flagellar M-ring protein fliF [Bacillus cereus BDRD-ST24] gi|228656425|gb|EEL12264.1| Flagellar M-ring protein fliF [Bacillus cereus BDRD-Cer4] Length = 524 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 77/373 (20%), Positives = 170/373 (45%), Gaps = 35/373 (9%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 SL L++ + +L ++ A +F Y +Y L +D I+ LS+ +D++ Sbjct: 10 SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132 ++ +G SI V + R + GLP +S SG E+ + +S G + +++ ++ Sbjct: 68 LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124 Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189 + LE +I R ++ A V I +P+ + F + A+ TA++ + + + + Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181 Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243 I+ +++AAVP + +V+V+DS +++ A+ + K + + ++ +++ Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEVEMQHQLEGKLKQ 241 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 +I+ L + ++ +N D E+ + ++ + SK Q ++ E Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355 A T +Q ++ +VP + N + K + NYEI+ K++ T + +L Sbjct: 297 GADT-KQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEID-KTVETIKKHPELT 354 Query: 356 RLSIAVVVNKGRL 368 + ++ V V+ L Sbjct: 355 KTNVVVWVDNDTL 367 >gi|229109203|ref|ZP_04238802.1| Flagellar M-ring protein fliF [Bacillus cereus Rock1-15] gi|228674213|gb|EEL29458.1| Flagellar M-ring protein fliF [Bacillus cereus Rock1-15] Length = 524 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 77/373 (20%), Positives = 170/373 (45%), Gaps = 35/373 (9%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 SL L++ + +L ++ A +F Y +Y L +D I+ LS+ +D++ Sbjct: 10 SLKMWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132 ++ +G SI V + R + GLP +S SG E+ + +S G + +++ ++ Sbjct: 68 LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124 Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189 + LE +I R ++ A V I +P+ + F + A+ TA++ + + + + Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181 Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243 I+ +++AAVP + +V+V+DS +++ A+ + K + + ++ +++ Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEVEMQHQLEGKLKQ 241 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 +I+ L + ++ +N D E+ + ++ + SK Q ++ E Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355 A T +Q ++ +VP + N + K + NYEI+ K++ T + +L Sbjct: 297 GADT-KQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEID-KTVETIKKHPELT 354 Query: 356 RLSIAVVVNKGRL 368 + ++ V V+ L Sbjct: 355 KTNVVVWVDNDTL 367 >gi|134282063|ref|ZP_01768769.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 305] gi|134246592|gb|EBA46680.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 305] Length = 284 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 88/185 (47%), Gaps = 20/185 (10%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSS 88 + LF R LY L D N + AL + +D + D+G + ++V Sbjct: 28 VALFAGCR--------QELYGGLAERDCNEMMAALLQNGVDAQKKTPDDGKTWTLAVDDK 79 Query: 89 MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQS 145 + KA L A+GLP++ + LF K GL S E RVR + G E++ T+ Sbjct: 80 QIVKAMEVLRARGLPATRYDDLGALFKK---DGLVSTPTE-ERVRFIYGVSQELSDTLSK 135 Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDM 204 I G+V ARVHIV+P+ ++ +ASV I+ N ++ I++LV +V L Sbjct: 136 IDGVVVARVHIVLPNNDPLAQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTY 195 Query: 205 GDVTV 209 +V+V Sbjct: 196 DEVSV 200 >gi|118477182|ref|YP_894333.1| flagellar MS-ring protein [Bacillus thuringiensis str. Al Hakam] gi|118416407|gb|ABK84826.1| flagellar M-ring protein [Bacillus thuringiensis str. Al Hakam] Length = 524 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 78/373 (20%), Positives = 170/373 (45%), Gaps = 35/373 (9%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 SL L++ + +L ++ A +F Y +Y L +D I+ LS+ +D++ Sbjct: 10 SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKLEITAELSKLGVDYQ 67 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132 ++ +G SI V + R + GLP +S SG E+ + +S G + +++ ++ Sbjct: 68 LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124 Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189 + LE +I R ++ A V I +P+ + F + A+ TA++ + + + + Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181 Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243 I+ +++AAVP + +V+V+DS +++ A+ + K + + I+ +++ Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEVEMQHQIEGKLKQ 241 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 +I+ L + ++ +N D E+ + ++ + SK Q ++ E Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355 A T +Q ++ +VP + N + K + NYEI+ K++ T + +L Sbjct: 297 GAET-KQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEID-KTVETIKKHPELT 354 Query: 356 RLSIAVVVNKGRL 368 + ++ V V+ L Sbjct: 355 KTNVVVWVDNDTL 367 >gi|296502346|ref|YP_003664046.1| flagellar MS-ring protein [Bacillus thuringiensis BMB171] gi|296323398|gb|ADH06326.1| flagellar MS-ring protein [Bacillus thuringiensis BMB171] Length = 524 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 77/373 (20%), Positives = 170/373 (45%), Gaps = 35/373 (9%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 SL L++ + +L ++ A +F Y +Y L +D I+ LS+ +D++ Sbjct: 10 SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132 ++ +G SI V + R + GLP +S SG E+ + +S G + +++ ++ Sbjct: 68 LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124 Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189 + LE +I R ++ A V I +P+ + F + A+ TA++ + + + + Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181 Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243 I+ +++AAVP + +V+V+DS +++ A+ + K + + ++ +++ Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEVEMQHQLEGKLKQ 241 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 +I+ L + ++ +N D E+ + ++ + SK Q ++ E Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355 A T +Q ++ +VP + N + K + NYEI+ K++ T + +L Sbjct: 297 GADT-KQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEID-KTVETIKKHPELT 354 Query: 356 RLSIAVVVNKGRL 368 + ++ V V+ L Sbjct: 355 KTNVVVWVDNDTL 367 >gi|167820515|ref|ZP_02452195.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 91] gi|167828888|ref|ZP_02460359.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 9] Length = 235 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 12/167 (7%) Query: 51 LYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSMVGKARIHLAAQGLPSSS 106 LY L D N + AL + +D + D G + ++V + KA L A+GLP++ Sbjct: 38 LYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPATR 97 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMGS 163 + LF K GL S E RVR + G E++ T+ I G+V ARVHIV+P+ Sbjct: 98 YDDLGALFKK---DGLVSTPTE-ERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDP 153 Query: 164 FRKIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209 ++ +ASV I+ N ++ I++LV +V L +V+V Sbjct: 154 LAQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSV 200 >gi|167584002|ref|ZP_02376390.1| lipoprotein transmembrane protein [Burkholderia ubonensis Bu] Length = 227 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 12/167 (7%) Query: 51 LYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSMVGKARIHLAAQGLPSSS 106 LY L D N + AL + +D + D G + ++V + KA L A+GLP++ Sbjct: 24 LYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPATR 83 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMGS 163 + LF K GL S E RVR + G E++ T+ I G+V ARVHIV+P+ Sbjct: 84 YDDLGALFKK---DGLVSTPTE-ERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDP 139 Query: 164 FRKIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209 ++ +ASV I+ N ++ I++LV +V L +V+V Sbjct: 140 LAQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSV 186 >gi|47566129|ref|ZP_00237167.1| flagellar M-ring protein, putative [Bacillus cereus G9241] gi|47557046|gb|EAL15376.1| flagellar M-ring protein, putative [Bacillus cereus G9241] Length = 515 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 77/365 (21%), Positives = 167/365 (45%), Gaps = 28/365 (7%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 SL L++ + +L ++ A +F Y +Y L +D I+ LS+ +D++ Sbjct: 10 SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132 ++ +G SI V + R + GLP +S SG E+ + +S G + +++ ++ Sbjct: 68 LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124 Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189 + LE +I R ++ A V I +P+ + F + A+ TA++ + + + + Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181 Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243 I+ +++AAVP + +V+V+DS +++ A+ + K + + I+ +++ Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEVEMQHQIEGKLKQ 241 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 +I+ L + ++ +N D E+ + ++ + SK Q ETS + Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQE-ETSTAQ 295 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 +Q ++ +VP + N + NYEI+ K++ T + +L + ++ V V Sbjct: 296 EGADTKQGAGITANGEVPNYGTNNNK-NGNKIENYEID-KTVETIKKHPELTKTNVVVWV 353 Query: 364 NKGRL 368 + L Sbjct: 354 DNDTL 358 >gi|167724370|ref|ZP_02407606.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei DM98] Length = 236 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 12/167 (7%) Query: 51 LYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSMVGKARIHLAAQGLPSSS 106 LY L D N + AL + +D + D G + ++V + KA L A+GLP++ Sbjct: 38 LYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPATR 97 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMGS 163 + LF K GL S E RVR + G E++ T+ I G+V ARVHIV+P+ Sbjct: 98 YDDLGALFKK---DGLVSTPTE-ERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDP 153 Query: 164 FRKIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209 ++ +ASV I+ N ++ I++LV +V L +V+V Sbjct: 154 LAQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSV 200 >gi|167898945|ref|ZP_02486346.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 7894] Length = 235 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 12/167 (7%) Query: 51 LYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSMVGKARIHLAAQGLPSSS 106 LY L D N + AL + +D + D G + ++V + KA L A+GLP++ Sbjct: 38 LYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPATR 97 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMGS 163 + LF K GL S E RVR + G E++ T+ I G+V ARVHIV+P+ Sbjct: 98 YDDLGALFKK---DGLVSTPTE-ERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDP 153 Query: 164 FRKIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209 ++ +ASV I+ N ++ I++LV +V L +V+V Sbjct: 154 LAQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSV 200 >gi|167915637|ref|ZP_02502728.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 112] Length = 239 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 12/167 (7%) Query: 51 LYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSMVGKARIHLAAQGLPSSS 106 LY L D N + AL + +D + D G + ++V + KA L A+GLP++ Sbjct: 38 LYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPATR 97 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMGS 163 + LF K GL S E RVR + G E++ T+ I G+V ARVHIV+P+ Sbjct: 98 YDDLGALFKK---DGLVSTPTE-ERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDP 153 Query: 164 FRKIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209 ++ +ASV I+ N ++ I++LV +V L +V+V Sbjct: 154 LAQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSV 200 >gi|238916746|ref|YP_002930263.1| flagellar M-ring protein FliF [Eubacterium eligens ATCC 27750] gi|238872106|gb|ACR71816.1| flagellar M-ring protein FliF [Eubacterium eligens ATCC 27750] Length = 536 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 70/281 (24%), Positives = 132/281 (46%), Gaps = 24/281 (8%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 +LL+ +K+ T R + +I+ S ++V I + + ++ P Y L + S++N ++ Sbjct: 11 RLLEIWKNWT---RNQKIIIVSAVVVFIAAVIVIAYVLSRPTYQELTKCEDYSEMNTVTT 67 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L++ ++I N +++V + A++ +A+ + S GY L D +NS LT+ Sbjct: 68 LLTDNGYTYQI--NNMTVNVKKQDLTNAKMLIASNDIKPS----GYSLDDALNS-SLTTT 120 Query: 126 MQEITR--VRALEGEIARTIQSISGIVAARVHI-VMPDMGSFRKIGARPTASVMIRAINP 182 + + + LE + A I S+ GI A V + + D SF T +V + Sbjct: 121 EADKNKKYAKYLETKFATDIASLDGIKKASVTVHLSDDTNSFYSTKKDTTVAVTVDTSKT 180 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK-LLTANEMERNILGKSLSIVQAIQHEI 241 +AE+I +A AV + +T++D+TGK L ++ ++ S S + +I Sbjct: 181 VSDDAAESIAVFLATAVGSSTTNGITIIDTTGKTLFNGSDNSGSVSNISYSSKLKYKSQI 240 Query: 242 EMNI-----NKALAAFLGVDNFRSAVVA-ELNMDTQQIREI 276 E + N AL+ L F A VA L++D + +I Sbjct: 241 ESTVAAGVKNTALSTSL----FNDATVAINLDLDWDTVNKI 277 >gi|317133489|ref|YP_004092803.1| flagellar M-ring protein FliF [Ethanoligenens harbinense YUAN-3] gi|315471468|gb|ADU28072.1| flagellar M-ring protein FliF [Ethanoligenens harbinense YUAN-3] Length = 528 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 56/229 (24%), Positives = 105/229 (45%), Gaps = 13/229 (5%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 Y+ +Y L ++ +I L I +++ +G+SI V S+ +AR+ LA G P ++ Sbjct: 49 QYELIYSGLSDAESGQIVADLQTRGIKYKL--DGNSIYVDKSVADQARMELAVDGYPQTT 106 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-- 164 N Y +++ N++ +T ++ + ++ + TIQ+I G+ A V I + ++ Sbjct: 107 LN--YSVYESGNNWAMTDKDKQQLALYQIQDRLQSTIQTIPGVKNAIVTITQGNDDTYVL 164 Query: 165 RKIGARPTASV--MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM 222 PTASV + K I ++V+ +V L +VTV DS G L N Sbjct: 165 ESDKVSPTASVKLTLTPGTTLTQKQVTGIVNIVSHSVSGLSADNVTVADSDGNTL--NNT 222 Query: 223 ERNILGKS---LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM 268 ++ G + L++ ++ EI + L G N + + A L+ Sbjct: 223 GDDLSGATSDQLALRVQVESEIRQKVLSVLGPVYGAANVQVSPAAILDF 271 >gi|237799989|ref|ZP_04588450.1| type III secretion protein HrcJ [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022844|gb|EGI02901.1| type III secretion protein HrcJ [Pseudomonas syringae pv. oryzae str. 1_6] Length = 269 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 85/159 (53%), Gaps = 10/159 (6%) Query: 50 NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 +L+ L D N + L++ +ID R + G ++V +S + +A L A GLP S Sbjct: 24 DLFTGLSEQDSNEVVARLADQHIDARKRMEKTGVVVTVATSDMNRAVRVLDAAGLPRHSR 83 Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 S E+F K +++ ++E R + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 84 TSLGEIFKKEGV--ISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERVAPGE 141 Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202 +A+V I+ A++P + I+ +VA+++P + Sbjct: 142 PIQPASAAVFIKHSAALDPDSVRG--RIQQMVASSIPGM 178 >gi|226198447|ref|ZP_03794015.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei Pakistan 9] gi|254186953|ref|ZP_04893469.1| lipoprotein transmembrane protein [Burkholderia pseudomallei Pasteur 52237] gi|157934637|gb|EDO90307.1| lipoprotein transmembrane protein [Burkholderia pseudomallei Pasteur 52237] gi|225929504|gb|EEH25523.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei Pakistan 9] Length = 270 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 87/185 (47%), Gaps = 20/185 (10%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSS 88 + LF R LY L D N + AL + +D + D G + ++V Sbjct: 28 VALFAGCR--------QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDK 79 Query: 89 MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQS 145 + KA L A+GLP++ + LF K GL S E RVR + G E++ T+ Sbjct: 80 QIVKAMEVLRARGLPATRYDDLGALFKK---DGLVSTPTE-ERVRFIYGVSQELSDTLSK 135 Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDM 204 I G+V ARVHIV+P+ ++ +ASV I+ N ++ I++LV +V L Sbjct: 136 IDGVVVARVHIVLPNNDPLAQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTY 195 Query: 205 GDVTV 209 +V+V Sbjct: 196 DEVSV 200 >gi|330872935|gb|EGH07084.1| type III secretion protein HrcJ [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330963064|gb|EGH63324.1| type III secretion protein HrcJ [Pseudomonas syringae pv. actinidiae str. M302091] Length = 268 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 85/159 (53%), Gaps = 10/159 (6%) Query: 50 NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 +L+ L D N + L++ +ID R + G ++V +S + +A L A GLP S Sbjct: 24 DLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSEMNRAVRVLDAAGLPRRSR 83 Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + E+F K +++ ++E R + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 84 TTLGEIFKKEGV--ISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141 Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202 +A+V I+ A++P + I+ +VA+++P + Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRG--RIQQMVASSIPGM 178 >gi|167573409|ref|ZP_02366283.1| lipoprotein transmembrane protein [Burkholderia oklahomensis C6786] Length = 262 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 12/167 (7%) Query: 51 LYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSMVGKARIHLAAQGLPSSS 106 LY L D N + AL + +D + D G + ++V + KA L A+GLP++ Sbjct: 39 LYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPATR 98 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMGS 163 + LF K GL S E RVR + G E++ T+ I G+V ARVHIV+P+ Sbjct: 99 YDDLGALFKK---DGLVSTPTE-ERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDP 154 Query: 164 FRKIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209 ++ +ASV I+ N ++ I++LV +V L +V+V Sbjct: 155 LAQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSV 201 >gi|167840290|ref|ZP_02466974.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia thailandensis MSMB43] Length = 253 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 12/167 (7%) Query: 51 LYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSMVGKARIHLAAQGLPSSS 106 LY L D N + AL + +D + D G + ++V + KA L A+GLP++ Sbjct: 37 LYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPAAR 96 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMGS 163 + LF K GL S E RVR + G E++ T+ I G+V ARVHIV+P+ Sbjct: 97 YDDLGALFKK---DGLVSTPTE-ERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDP 152 Query: 164 FRKIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209 ++ +ASV I+ N ++ I++LV +V L +V+V Sbjct: 153 LAQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSV 199 >gi|28868592|ref|NP_791211.1| type III secretion protein HrcJ [Pseudomonas syringae pv. tomato str. DC3000] gi|213968275|ref|ZP_03396419.1| type III secretion protein HrcJ [Pseudomonas syringae pv. tomato T1] gi|301383410|ref|ZP_07231828.1| type III secretion protein HrcJ [Pseudomonas syringae pv. tomato Max13] gi|302061714|ref|ZP_07253255.1| type III secretion protein HrcJ [Pseudomonas syringae pv. tomato K40] gi|302129971|ref|ZP_07255961.1| type III secretion protein HrcJ [Pseudomonas syringae pv. tomato NCPPB 1108] gi|790910|gb|AAB00129.1| HrpC [Pseudomonas syringae pv. tomato] gi|28851830|gb|AAO54906.1| type III secretion protein HrcJ [Pseudomonas syringae pv. tomato str. DC3000] gi|213926913|gb|EEB60464.1| type III secretion protein HrcJ [Pseudomonas syringae pv. tomato T1] gi|331015115|gb|EGH95171.1| type III secretion protein HrcJ [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 268 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 85/159 (53%), Gaps = 10/159 (6%) Query: 50 NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 +L+ L D N + L++ +ID R + G ++V +S + +A L A GLP S Sbjct: 24 DLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSEMNRAVRVLDAAGLPRRSR 83 Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + E+F K +++ ++E R + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 84 TTLGEIFKKEGV--ISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141 Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202 +A+V I+ A++P + I+ +VA+++P + Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRG--RIQQMVASSIPGM 178 >gi|76819642|ref|YP_335842.1| lipoprotein transmembrane protein [Burkholderia pseudomallei 1710b] gi|76584115|gb|ABA53589.1| lipoprotein transmembrane protein [Burkholderia pseudomallei 1710b] Length = 282 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 87/185 (47%), Gaps = 20/185 (10%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSS 88 + LF R LY L D N + AL + +D + D G + ++V Sbjct: 26 VALFAGCR--------QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDK 77 Query: 89 MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQS 145 + KA L A+GLP++ + LF K GL S E RVR + G E++ T+ Sbjct: 78 QIVKAMEVLRARGLPATRYDDLGALFKK---DGLVSTPTE-ERVRFIYGVSQELSDTLSK 133 Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDM 204 I G+V ARVHIV+P+ ++ +ASV I+ N ++ I++LV +V L Sbjct: 134 IDGVVVARVHIVLPNNDPLAQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTY 193 Query: 205 GDVTV 209 +V+V Sbjct: 194 DEVSV 198 >gi|229017034|ref|ZP_04173954.1| Flagellar M-ring protein fliF [Bacillus cereus AH1273] gi|229023215|ref|ZP_04179726.1| Flagellar M-ring protein fliF [Bacillus cereus AH1272] gi|228738140|gb|EEL88625.1| Flagellar M-ring protein fliF [Bacillus cereus AH1272] gi|228744305|gb|EEL94387.1| Flagellar M-ring protein fliF [Bacillus cereus AH1273] Length = 525 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 79/381 (20%), Positives = 174/381 (45%), Gaps = 38/381 (9%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 +++L F+S L L++ + +L ++ A +F Y +Y L +D I Sbjct: 1 MEKLKNVFQS---LKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + LS+ +D++++ +G SI V + R + GLP +S SG E+ + +S G + Sbjct: 56 TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSS 112 Query: 124 SFMQEITRV----RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIR 178 +++ ++ + LE +I R I A V I +P+ + F + A+ TA++ + Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAVIE---TANVQITLPEKETIFDEEKAKGTAAITVG 169 Query: 179 AINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSL 231 + + + I+ +++AAVP + +V+V+DS +++ A+ + K + Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGAGEAHSSSSSSYEKEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + I+ +++ +I+ L + ++ +N D E+ + ++ + S Sbjct: 230 EMQHQIEGKLKRDIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRS 284 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTK 343 K Q E+S + ++Q ++ +VP + N + K + NYEI+ K Sbjct: 285 KQEQE-ESSTAQEGADMKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEID-K 342 Query: 344 SIATTHDNYKLERLSIAVVVN 364 ++ T + +L + ++ V V+ Sbjct: 343 TVETIKKHPELTKTNVVVWVD 363 >gi|254193798|ref|ZP_04900230.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei S13] gi|169650549|gb|EDS83242.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei S13] Length = 284 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 87/185 (47%), Gaps = 20/185 (10%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSS 88 + LF R LY L D N + AL + +D + D G + ++V Sbjct: 28 VALFAGCR--------QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDK 79 Query: 89 MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQS 145 + KA L A+GLP++ + LF K GL S E RVR + G E++ T+ Sbjct: 80 QIVKAMEVLRARGLPATRYDDLGALFKK---DGLVSTPTE-ERVRFIYGVSQELSDTLSK 135 Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDM 204 I G+V ARVHIV+P+ ++ +ASV I+ N ++ I++LV +V L Sbjct: 136 IDGVVVARVHIVLPNNDPLAQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTY 195 Query: 205 GDVTV 209 +V+V Sbjct: 196 DEVSV 200 >gi|126442814|ref|YP_001063279.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Burkholderia pseudomallei 668] gi|126222305|gb|ABN85810.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 668] Length = 284 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 87/185 (47%), Gaps = 20/185 (10%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSS 88 + LF R LY L D N + AL + +D + D G + ++V Sbjct: 28 VALFAGCR--------QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDK 79 Query: 89 MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQS 145 + KA L A+GLP++ + LF K GL S E RVR + G E++ T+ Sbjct: 80 QIVKAMEVLRARGLPATRYDDLGALFKK---DGLVSTPTE-ERVRFIYGVSQELSDTLSK 135 Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDM 204 I G+V ARVHIV+P+ ++ +ASV I+ N ++ I++LV +V L Sbjct: 136 IDGVVVARVHIVLPNNDPLAQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTY 195 Query: 205 GDVTV 209 +V+V Sbjct: 196 DEVSV 200 >gi|53722647|ref|YP_111632.1| type III secretion protein [Burkholderia pseudomallei K96243] gi|126457668|ref|YP_001076235.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Burkholderia pseudomallei 1106a] gi|217422397|ref|ZP_03453900.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 576] gi|242312420|ref|ZP_04811437.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 1106b] gi|254264523|ref|ZP_04955388.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 1710a] gi|52213061|emb|CAH39099.1| putative type III secretion protein [Burkholderia pseudomallei K96243] gi|126231436|gb|ABN94849.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 1106a] gi|217394628|gb|EEC34647.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 576] gi|242135659|gb|EES22062.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 1106b] gi|254215525|gb|EET04910.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 1710a] Length = 284 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 87/185 (47%), Gaps = 20/185 (10%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSS 88 + LF R LY L D N + AL + +D + D G + ++V Sbjct: 28 VALFAGCR--------QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDK 79 Query: 89 MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQS 145 + KA L A+GLP++ + LF K GL S E RVR + G E++ T+ Sbjct: 80 QIVKAMEVLRARGLPATRYDDLGALFKK---DGLVSTPTE-ERVRFIYGVSQELSDTLSK 135 Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDM 204 I G+V ARVHIV+P+ ++ +ASV I+ N ++ I++LV +V L Sbjct: 136 IDGVVVARVHIVLPNNDPLAQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTY 195 Query: 205 GDVTV 209 +V+V Sbjct: 196 DEVSV 200 >gi|153003620|ref|YP_001377945.1| secretory protein YscJ/FliF family protein [Anaeromyxobacter sp. Fw109-5] gi|152027193|gb|ABS24961.1| secretory protein YscJ/FliF family protein [Anaeromyxobacter sp. Fw109-5] Length = 239 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 24/178 (13%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDF-----RISDNGSSISVPSSMVGKARIHLAAQGLP 103 + L L+ + N + VAL E + SD ++V + +A LA + LP Sbjct: 20 EELLHGLDEAQANEVLVALDEGGLPATKRREEGSDGQWMVAVGAHDAARAHRVLAERELP 79 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 + E+F K S T + + AL GE++R+++SI G+V ARVH+ +P Sbjct: 80 RARPPGFGEVFGK-GSMVPTPTEEHALYLHALAGELSRSVESIDGVVEARVHLGLPQPDP 138 Query: 164 FRK-----------IGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 R + RP A +RA+ IR LVA A L+ G ++V+ Sbjct: 139 LRPGDVPAPRGAVLVKCRPAACDAVRALE-------AGIRALVAGAAGGLEPGAISVV 189 >gi|88800454|ref|ZP_01116018.1| flagellar M-ring protein FliF [Reinekea sp. MED297] gi|88776784|gb|EAR07995.1| flagellar M-ring protein FliF [Reinekea sp. MED297] Length = 318 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 71/316 (22%), Positives = 138/316 (43%), Gaps = 33/316 (10%) Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE------ 298 +N L+ +G D F++ V A+++ + E +++PD +RS + + + E Sbjct: 20 VNSILSPIIGGDKFQAEVSADIDFTKVEQAEELFNPDLIAKRSEQTISEERVGEEQGGIP 79 Query: 299 ---TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 T+QP + + + P PRS + E NYE++ T ++ Sbjct: 80 GALTNQPPTDAEAPEEVDGQGQANGP-PRS----SRDEATINYEVDRTLSYTQFQQGRVR 134 Query: 356 RLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 RL++AVVV+ +T+ G + Q ++ L + +V A G ++ RGD+I + + +FL Sbjct: 135 RLTVAVVVDDLEVTDPETGETVTQAWDEASLQRLRTLVQDAVGYDASRGDSINVINSEFL 194 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH-ALRRLHNIDDAKKGE 473 Q QV F F + ++ + L++ F L A+R L + ++ E Sbjct: 195 AEQ---DAVEQVPFY--AEPWFWEIAKQILAGLFVLILIFGILRPAVRNLLAKGEDEQAE 249 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 + L+ V L+ +D ++L + ++ NL S+ + LR Sbjct: 250 SDEDAALA----QLDVDEDLIADDKVSLSAVDE------YNLPGPSESFERQLDALR--G 297 Query: 534 MIEINEERFAKILRKW 549 +I + R A +L++W Sbjct: 298 LIAEDPGRVALVLKRW 313 >gi|331009141|gb|EGH89197.1| type III secretion component protein HrcJ [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 444 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 85/159 (53%), Gaps = 10/159 (6%) Query: 50 NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 +L+ L D N + L++ +ID R + G ++V +S + +A L A GLP S Sbjct: 24 DLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQSR 83 Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 S ++F K +++ ++E R + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 84 ASLGDIFKKEGV--ISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141 Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202 +A+V I+ A++P + I+ +VA+++P + Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRG--RIQQMVASSIPGM 178 >gi|237509505|ref|ZP_04522220.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei MSHR346] gi|235001710|gb|EEP51134.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei MSHR346] Length = 277 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 87/185 (47%), Gaps = 20/185 (10%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSS 88 + LF R LY L D N + AL + +D + D G + ++V Sbjct: 28 VALFAGCR--------QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDK 79 Query: 89 MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQS 145 + KA L A+GLP++ + LF K GL S E RVR + G E++ T+ Sbjct: 80 QIVKAMEVLRARGLPATRYDDLGALFKK---DGLVSTPTE-ERVRFIYGVSQELSDTLSK 135 Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDM 204 I G+V ARVHIV+P+ ++ +ASV I+ N ++ I++LV +V L Sbjct: 136 IDGVVVARVHIVLPNNDPLAQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTY 195 Query: 205 GDVTV 209 +V+V Sbjct: 196 DEVSV 200 >gi|330894451|gb|EGH27112.1| type III secretion protein HrcJ [Pseudomonas syringae pv. mori str. 301020] Length = 269 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 84/159 (52%), Gaps = 10/159 (6%) Query: 50 NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 +L+ L D N + L++ +ID R + G ++V + + +A L A GLP S Sbjct: 24 DLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATRDMNRAVRVLNAAGLPRQSR 83 Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 S E+F K +++ ++E R + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 84 TSLGEIFKKEGV--ISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141 Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202 +A+V I+ A++P + I+ +VA+++P + Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRG--RIQQMVASSIPGM 178 >gi|257142047|ref|ZP_05590309.1| lipoprotein transmembrane protein [Burkholderia thailandensis E264] Length = 287 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 14/168 (8%) Query: 51 LYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSMVGKARIHLAAQGLPSSS 106 LY L D N + AL + +D + D G + ++V + KA L A+GLP++ Sbjct: 41 LYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPATR 100 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMGS 163 + LF K GL S E RVR + G E++ T+ I G+V ARVHIV+P+ Sbjct: 101 YDDLGALFKK---DGLVSTPTE-ERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDP 156 Query: 164 FRKIGARPTASVMIRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTV 209 ++ +ASV I+ PS + I++LV +V L +V+V Sbjct: 157 LAQVAKPSSASVFIK-YRPSANLATLTPQIKNLVVHSVEGLTYDEVSV 203 >gi|82795289|gb|ABB91658.1| type III secretion protein HrcJ [Pseudomonas syringae pv. tagetis] Length = 268 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 85/159 (53%), Gaps = 10/159 (6%) Query: 50 NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 +L+ L D N + L++ +ID R + G ++V +S + +A L A GLP S Sbjct: 24 DLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLDAAGLPRHSR 83 Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 S E+F K +++ ++E R + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 84 TSLGEIFKKEGV--ISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141 Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202 +A+V I+ +++P + I+ +VA+++P + Sbjct: 142 PVQPASAAVFIKHSASLDPDSVRG--RIQQMVASSIPGM 178 >gi|330957475|gb|EGH57735.1| type III secretion protein HrcJ [Pseudomonas syringae pv. maculicola str. ES4326] Length = 269 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 84/159 (52%), Gaps = 10/159 (6%) Query: 50 NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 +L+ L D N + L++ +ID R + G ++V + + +A L A GLP S Sbjct: 24 DLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATRDMNRAVRVLNAAGLPRQSR 83 Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 S E+F K +++ ++E R + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 84 TSLGEIFKKEGV--ISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141 Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202 +A+V I+ A++P + I+ +VA+++P + Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRG--RIQQMVASSIPGM 178 >gi|83716240|ref|YP_438944.1| lipoprotein transmembrane protein [Burkholderia thailandensis E264] gi|83650065|gb|ABC34129.1| lipoprotein transmembrane protein [Burkholderia thailandensis E264] Length = 285 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 14/168 (8%) Query: 51 LYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSMVGKARIHLAAQGLPSSS 106 LY L D N + AL + +D + D G + ++V + KA L A+GLP++ Sbjct: 39 LYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPATR 98 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMGS 163 + LF K GL S E RVR + G E++ T+ I G+V ARVHIV+P+ Sbjct: 99 YDDLGALFKK---DGLVSTPTE-ERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDP 154 Query: 164 FRKIGARPTASVMIRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTV 209 ++ +ASV I+ PS + I++LV +V L +V+V Sbjct: 155 LAQVAKPSSASVFIK-YRPSANLATLTPQIKNLVVHSVEGLTYDEVSV 201 >gi|330937050|gb|EGH41134.1| type III secretion protein HrcJ [Pseudomonas syringae pv. pisi str. 1704B] Length = 229 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 85/159 (53%), Gaps = 10/159 (6%) Query: 50 NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 +L+ L D N + L++ +ID R + G ++V +S + +A L A GLP S Sbjct: 24 DLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQSR 83 Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 S ++F K +++ ++E R + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 84 ASLGDIFKKEGV--ISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141 Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202 +A+V I+ A++P + I+ +VA+++P + Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRG--RIQQMVASSIPGM 178 >gi|330984953|gb|EGH83056.1| type III secretion protein HrcJ [Pseudomonas syringae pv. lachrymans str. M301315] Length = 269 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 84/159 (52%), Gaps = 10/159 (6%) Query: 50 NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 +L+ L D N + L++ +ID R + G ++V + + +A L A GLP S Sbjct: 24 DLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATRDMNRAVRVLNAAGLPRQSR 83 Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 S E+F K +++ ++E R + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 84 TSLGEIFKKEGV--ISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141 Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202 +A+V I+ A++P + I+ +VA+++P + Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRG--RIQQMVASSIPGM 178 >gi|319795607|ref|YP_004157247.1| type III secretion apparatus lipoprotein, yscj/hrcj family [Variovorax paradoxus EPS] gi|315598070|gb|ADU39136.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Variovorax paradoxus EPS] Length = 267 Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 39/114 (34%), Positives = 61/114 (53%), Gaps = 8/114 (7%) Query: 51 LYVKLEVSDVNRISVALSEANIDF---RISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 ++ L + N I VAL+ ID R+ + V S +G A L AQGLP+ Sbjct: 37 IFSNLNEVEANEIVVALAAEGIDASKTRLEGTNWQVDVEESRMGTALEILRAQGLPAERY 96 Query: 108 NSGYELFDKVNSFGLTSFMQE--ITRVRALEGEIARTIQSISGIVAARVHIVMP 159 S ++F K GL S E + + A+ E+A+T++++ G+VAARVH+V+P Sbjct: 97 ASMGDVFQKQ---GLVSTPSEERMRYIYAVSQELAQTLRTVDGVVAARVHVVIP 147 >gi|167577322|ref|ZP_02370196.1| lipoprotein transmembrane protein [Burkholderia thailandensis TXDOH] Length = 260 Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 14/168 (8%) Query: 51 LYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSMVGKARIHLAAQGLPSSS 106 LY L D N + AL + +D + D G + ++V + KA L A+GLP++ Sbjct: 41 LYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPATR 100 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMGS 163 + LF K GL S E RVR + G E++ T+ I G+V ARVHIV+P+ Sbjct: 101 YDDLGALFKK---DGLVSTPTE-ERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDP 156 Query: 164 FRKIGARPTASVMIRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTV 209 ++ +ASV I+ PS + I++LV +V L +V+V Sbjct: 157 LAQVAKPSSASVFIK-YRPSANLATLTPQIKNLVVHSVEGLTYDEVSV 203 >gi|312602780|ref|YP_004022625.1| type III secretion cytoplasmic membrane protein SctJ [Burkholderia rhizoxinica HKI 454] gi|306431583|emb|CBK52135.1| type III secretion cytoplasmic membrane protein SctJ [Burkholderia rhizoxinica HKI 454] gi|312170094|emb|CBW77106.1| type III secretion cytoplasmic membrane protein SctJ [Burkholderia rhizoxinica HKI 454] Length = 265 Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 51/139 (36%), Positives = 73/139 (52%), Gaps = 13/139 (9%) Query: 48 YDNLYVKLEVSDVNRISVALSEANIDFRIS--DNGS--SISVPSSMVGKARIHLAAQGLP 103 + LY L DVN + VAL E +D S DNG S+SV + + +A L A+GLP Sbjct: 29 HKELYNNLSEQDVNEMMVALLERGVDASKSTPDNGKTWSLSVEEAEIVRAMEVLRARGLP 88 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPD 160 + + LF + GL S E RVR + G E++ T+ I G+V ARV IV+P+ Sbjct: 89 HAKYDDLGSLFKR---DGLVSTPTE-ERVRFIYGLSQELSNTLSKIDGVVVARVQIVLPN 144 Query: 161 MGSFRKIGARP-TASVMIR 178 + A+P +ASV I+ Sbjct: 145 NDPL-ALQAKPSSASVFIK 162 >gi|289623695|ref|ZP_06456649.1| type III secretion component protein HrcJ [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647631|ref|ZP_06478974.1| type III secretion component protein HrcJ [Pseudomonas syringae pv. aesculi str. 2250] gi|330871299|gb|EGH06008.1| type III secretion component protein HrcJ [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 268 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 85/159 (53%), Gaps = 10/159 (6%) Query: 50 NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 +L+ L D N + L++ +ID R + G ++V +S + +A L A GLP S Sbjct: 24 DLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQSR 83 Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 S ++F K +++ ++E R + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 84 ASLGDIFKKEGV--ISTPLEERARYIYALSQELESTLSQIDGVIVARVHVVLPERIAPGE 141 Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202 +A+V I+ A++P + I+ +VA+++P + Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRG--RIQQMVASSIPGM 178 >gi|167615471|ref|ZP_02384106.1| lipoprotein transmembrane protein [Burkholderia thailandensis Bt4] Length = 252 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 14/168 (8%) Query: 51 LYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSMVGKARIHLAAQGLPSSS 106 LY L D N + AL + +D + D G + ++V + KA L A+GLP++ Sbjct: 41 LYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPATR 100 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMGS 163 + LF K GL S E RVR + G E++ T+ I G+V ARVHIV+P+ Sbjct: 101 YDDLGALFKK---DGLVSTPTE-ERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDP 156 Query: 164 FRKIGARPTASVMIRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTV 209 ++ +ASV I+ PS + I++LV +V L +V+V Sbjct: 157 LAQVAKPSSASVFIK-YRPSANLATLTPQIKNLVVHSVEGLTYDEVSV 203 >gi|51103010|gb|AAT96157.1| HrcJ [Pseudomonas viridiflava] gi|51103065|gb|AAT96211.1| HrcJ [Pseudomonas viridiflava] Length = 268 Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 84/159 (52%), Gaps = 10/159 (6%) Query: 50 NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 +L+ + D N + L++ +ID R + G ++V + + +A L A GLP S Sbjct: 24 DLFTGMSEQDSNEVIARLADQHIDARKRLEKGGVVVTVATQDMNRAVRVLDAAGLPRQSR 83 Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 S E+F K +++ ++E R + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 84 TSLGEIFKKEGV--ISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141 Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202 +A+V I+ A++P + I+ +VA+++P + Sbjct: 142 PVQPASAAVFIKHSTALDPDSVRG--RIQQMVASSIPGM 178 >gi|257487247|ref|ZP_05641288.1| type III secretion component protein HrcJ [Pseudomonas syringae pv. tabaci ATCC 11528] gi|50508099|dbj|BAD30075.1| HrcJ [Pseudomonas syringae pv. tabaci] gi|238577776|gb|ACR46687.1| HrcJ [Pseudomonas syringae pv. tabaci] Length = 268 Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 85/159 (53%), Gaps = 10/159 (6%) Query: 50 NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 +L+ L D N + L++ +ID R + G ++V +S + +A L A GLP S Sbjct: 24 DLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQSR 83 Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 S ++F K +++ ++E R + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 84 ASLGDIFKKEGV--ISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141 Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202 +A+V I+ A++P + I+ +VA+++P + Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRG--RIQQMVASSIPGM 178 >gi|298485938|ref|ZP_07004013.1| type III secretion system lipoprotein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159524|gb|EFI00570.1| type III secretion system lipoprotein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 268 Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 85/159 (53%), Gaps = 10/159 (6%) Query: 50 NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 +L+ L D N + L++ +ID R + G ++V +S + +A L A GLP S Sbjct: 24 DLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQSR 83 Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 S ++F K +++ ++E R + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 84 ASLGDIFKKEGV--ISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141 Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202 +A+V I+ A++P + I+ +VA+++P + Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRG--RIQQMVASSIPGM 178 >gi|9800448|gb|AAF99294.1|AF268940_4 HrcJ [Pseudomonas syringae pv. phaseolicola] Length = 268 Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 85/159 (53%), Gaps = 10/159 (6%) Query: 50 NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 +L+ L D N + L++ +ID R + G ++V +S + +A L A GLP S Sbjct: 24 DLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQSR 83 Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 S ++F K +++ ++E R + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 84 ASLGDIFKKEGV--ISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141 Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202 +A+V I+ A++P + I+ +VA+++P + Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRG--RIQQMVASSIPGM 178 >gi|71734078|ref|YP_273534.1| type III secretion component protein HrcJ [Pseudomonas syringae pv. phaseolicola 1448A] gi|37528863|gb|AAQ92361.1| HrcJ [Pseudomonas syringae] gi|71554631|gb|AAZ33842.1| type III secretion component protein HrcJ [Pseudomonas syringae pv. phaseolicola 1448A] gi|320322966|gb|EFW79056.1| type III secretion component protein HrcJ [Pseudomonas syringae pv. glycinea str. B076] gi|320329911|gb|EFW85899.1| type III secretion component protein HrcJ [Pseudomonas syringae pv. glycinea str. race 4] gi|330874585|gb|EGH08734.1| type III secretion component protein HrcJ [Pseudomonas syringae pv. glycinea str. race 4] Length = 268 Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 85/159 (53%), Gaps = 10/159 (6%) Query: 50 NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 +L+ L D N + L++ +ID R + G ++V +S + +A L A GLP S Sbjct: 24 DLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQSR 83 Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 S ++F K +++ ++E R + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 84 ASLGDIFKKEGV--ISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141 Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202 +A+V I+ A++P + I+ +VA+++P + Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRG--RIQQMVASSIPGM 178 >gi|330969118|gb|EGH69184.1| type III secretion protein HrcJ [Pseudomonas syringae pv. aceris str. M302273PT] Length = 268 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 85/159 (53%), Gaps = 10/159 (6%) Query: 50 NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 +L+ L D N + L++ +ID R + G ++V +S + +A L A GLP S Sbjct: 24 DLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQSR 83 Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 S ++F K +++ ++E R + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 84 ASLGDIFKKEGV--ISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141 Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202 +A+V I+ A++P + I+ +VA+++P + Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRG--RIQQMVASSIPGM 178 >gi|289678028|ref|ZP_06498918.1| type III secretion protein HrcJ [Pseudomonas syringae pv. syringae FF5] gi|330895842|gb|EGH28130.1| type III secretion protein HrcJ [Pseudomonas syringae pv. japonica str. M301072PT] Length = 268 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 85/159 (53%), Gaps = 10/159 (6%) Query: 50 NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 +L+ L D N + L++ +ID R + G ++V +S + +A L A GLP S Sbjct: 24 DLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQSR 83 Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 S ++F K +++ ++E R + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 84 ASLGDIFKKEGV--ISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141 Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202 +A+V I+ A++P + I+ +VA+++P + Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRG--RIQQMVASSIPGM 178 >gi|66044446|ref|YP_234287.1| type III secretion protein HrcJ [Pseudomonas syringae pv. syringae B728a] gi|63255153|gb|AAY36249.1| type III secretion protein HrcJ [Pseudomonas syringae pv. syringae B728a] Length = 268 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 85/159 (53%), Gaps = 10/159 (6%) Query: 50 NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 +L+ L D N + L++ +ID R + G ++V +S + +A L A GLP S Sbjct: 24 DLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQSR 83 Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 S ++F K +++ ++E R + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 84 ASLGDIFKKEGV--ISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141 Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202 +A+V I+ A++P + I+ +VA+++P + Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRG--RIQQMVASSIPGM 178 >gi|194350697|gb|ACF53779.1| HrcJ [Erwinia psidii] Length = 146 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 77/149 (51%), Gaps = 8/149 (5%) Query: 59 DVNRISVALSEANI--DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 D N ++ L +I D R S +G ++ V ++ + +A L A GLP + + E+F K Sbjct: 1 DANEVAAELGRYHIQADKRTSKDGITVLVDAAELNRAVHILDAAGLPRPARTNLGEVFQK 60 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 N T + + AL E+ T+ I G++ ARVH+V+P+ + + +A+V Sbjct: 61 -NGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAPGEPVQPASAAVF 119 Query: 177 IRA---INPSVYKSAEAIRHLVAAAVPNL 202 I+ ++P V + IR +VA+++P L Sbjct: 120 IKYRPDLDPDVIEP--RIRQMVASSLPGL 146 >gi|330950834|gb|EGH51094.1| type III secretion protein HrcJ [Pseudomonas syringae Cit 7] Length = 268 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 85/159 (53%), Gaps = 10/159 (6%) Query: 50 NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 +L+ L D N + L++ +ID R + G ++V +S + +A L A GLP S Sbjct: 24 DLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQSR 83 Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 S ++F K +++ ++E R + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 84 ASLGDIFKKEGV--ISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141 Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202 +A+V I+ A++P + I+ +VA+++P + Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRG--RIQQMVASSIPGM 178 >gi|818896|gb|AAB05080.1| HrcJ [Pseudomonas syringae pv. syringae] Length = 268 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 85/159 (53%), Gaps = 10/159 (6%) Query: 50 NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 +L+ L D N + L++ +ID R + G ++V +S + +A L A GLP S Sbjct: 24 DLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQSR 83 Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 S ++F K +++ ++E R + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 84 ASLGDIFKKEGV--ISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141 Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202 +A+V I+ A++P + I+ +VA+++P + Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRG--RIQQMVASSIPGM 178 >gi|226327719|ref|ZP_03803237.1| hypothetical protein PROPEN_01592 [Proteus penneri ATCC 35198] gi|225203423|gb|EEG85777.1| hypothetical protein PROPEN_01592 [Proteus penneri ATCC 35198] Length = 396 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 58/261 (22%), Positives = 111/261 (42%), Gaps = 39/261 (14%) Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKA 248 AI H+VA++V + VT++D +GKLLT + + R++ L VQ ++ + I Sbjct: 16 AIVHIVASSVAGMPDSSVTIVDQSGKLLTQPDALGRDLNSIQLKYVQELESRYQQRIETL 75 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------- 298 L +G N + V A+++ + Y P+ ++ SK +SE Sbjct: 76 LGPIVGRGNVHAQVTAQVDFSHTEETAEEYKPNQPPNQAAVRSKQLSQSEQNGGMLAGGV 135 Query: 299 ----TSQPESAVTVEQNMPHVSDRKV-----------PLPRSLENTDKKEEQSNYEINTK 343 ++QP + P + + L R+ + + +E +NYE++ + Sbjct: 136 PGALSNQPVAPPQAPIETPKAQEGEKTEGTNATGTNRSLTRNPNSNSRLDETTNYEVDRR 195 Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK-----------IDSYLAEINKIV 392 +ERLS+AV+VN + + A +G+ D + +I +V Sbjct: 196 IRHIKRPVGNVERLSVAVIVNYKTVEN--KKEAAEGEEPVVETKLVPLTDEQIQQIEGLV 253 Query: 393 SAATGINSRRGDTITITSMDF 413 A G + RGD++++ + F Sbjct: 254 REAMGYSQERGDSLSVVNSQF 274 >gi|302338077|ref|YP_003803283.1| flagellar M-ring protein FliF [Spirochaeta smaragdinae DSM 11293] gi|301635262|gb|ADK80689.1| flagellar M-ring protein FliF [Spirochaeta smaragdinae DSM 11293] Length = 569 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 91/395 (23%), Positives = 165/395 (41%), Gaps = 48/395 (12%) Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 +++ISV L E ++ I+ G I VP + + + A+ + S +++F K++ Sbjct: 64 LDKISVRLDEEGVEHTITAEGL-ILVPDKRTAQRMVSILAREDLIPADTSPWDIF-KMDR 121 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 + LT F + + RA+ + + I+++ + A+V +V+P+ F++ TASV+I Sbjct: 122 WTLTDFERNVNLRRAITENLEQHIEALEDVDNAQVTLVLPEDKLFQEDQNPVTASVIITP 181 Query: 180 -----INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGK- 229 I S K E I LV AV L ++ + D G +L + +R L K Sbjct: 182 RPGSDITQSRSK-IEGIVKLVRLAVEGLKDENIVISDQRGVVLNDFADMADFDRLELSKR 240 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVD-----------NFRSAVVA-ELNMDTQQIREIV 277 L Q ++ + I ++ G D +FR V+ E + + + Sbjct: 241 QLDQKQRLEATYKNQIFTEMSQIFGSDRVSILKVDIDLDFRKETVSTEEHFPVTTVEDNP 300 Query: 278 YDPDSKVE------RSIRLSKDAQRSETSQPESAVTVE-QNMPHVSDRKVPLPRSLENTD 330 P ++ E RS + K+ + PE E Q P D + + N + Sbjct: 301 NTPYNEREYVLSIPRSSEIVKEEFKGTGFNPEGPPGQEGQTPPAYKD----MNNLVGNYN 356 Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN---KGRLTEVLGRSAD-QGKI----- 381 K E N E+NT++I + + R+++ V V+ + E D G I Sbjct: 357 KNSEIINQEVNTRNIVEEKSPWTIRRITVGVAVDGVWRWSYNENGTVKLDTDGSIEREYT 416 Query: 382 ---DSYLAEINKIVSAATGINSRRGDTITITSMDF 413 D L + ++ A G N RGD++T+ + F Sbjct: 417 PVSDEDLNKAQTLIEHAVGFNRERGDSVTVQHIQF 451 >gi|42562013|gb|AAS20455.1| HrcJ [Pseudomonas syringae pv. phaseolicola] Length = 268 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 85/159 (53%), Gaps = 10/159 (6%) Query: 50 NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 +L+ L D N + L++ +ID R + G ++V +S + +A L A GLP S Sbjct: 24 DLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQSR 83 Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 S ++F K +++ ++E R + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 84 ASLGDIFKKEGV--ISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141 Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202 +A+V I+ A++P + I+ +VA+++P + Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRG--RIQQMVASSIPGM 178 >gi|330975852|gb|EGH75918.1| type III secretion protein HrcJ [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 268 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 85/159 (53%), Gaps = 10/159 (6%) Query: 50 NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 +L+ L D N + L++ +ID R + G ++V +S + +A L A GLP S Sbjct: 24 DLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQSR 83 Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 S ++F K +++ ++E R + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 84 ASLGDIFKKEGV--ISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141 Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202 +A+V I+ A++P + I+ +VA+++P + Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRG--RIQQMVASSIPGM 178 >gi|307947525|ref|ZP_07662858.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Roseibium sp. TrichSKD4] gi|307769343|gb|EFO28571.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Roseibium sp. TrichSKD4] Length = 250 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 9/165 (5%) Query: 51 LYVKLEVSDVNRISVALSEANIDF---RISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 LY KL+ DVN ++ L I R S+ ++ + +A LA GLP Sbjct: 33 LYSKLDERDVNEMAFVLESNGISVSRERDSEGTYTLFIERGDTARAYGILAQNGLPRQKF 92 Query: 108 NSGYELF--DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 + E+F DK+ S T+F ++ + A+ E++++I I+G+ +A VHI +P+ Sbjct: 93 DGLGEVFSSDKLVS---TAFEEKARFIHAVTEELSKSISRIAGVTSAEVHITLPEKAPLE 149 Query: 166 KIGARPTASVMI-RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209 + A A+V I + + I++LVA++V L DV+V Sbjct: 150 EETAPSRAAVFIYHSQGTDLNAQIPVIKNLVASSVERLSYEDVSV 194 >gi|312597814|gb|ADQ89929.1| RscJ [Pseudomonas fluorescens] Length = 293 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 84/164 (51%), Gaps = 12/164 (7%) Query: 51 LYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108 L+ L D N + L+ N++ ++ +G ++ V + + A L A GLP S + Sbjct: 22 LHSHLSEQDANEVIAELANKNVEASKQVDKDGLTVLVEPADMNSAVQVLEAAGLPRRSRS 81 Query: 109 SGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 S E+F K +++ M+E R + AL E+ T+ I G+V ARVH+V+P+ + + Sbjct: 82 SLGEIFRKEGV--ISTPMEERARYIYALSQELESTLSQIDGVVLARVHVVLPERVAPGEP 139 Query: 168 GARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNLDMGDVT 208 +ASV I+ A++P +R+LVA+ +P M D T Sbjct: 140 VQPASASVFIKHTNALDPD--SITPRVRNLVASGIPG--MADAT 179 >gi|3603315|gb|AAC35801.1| putative hrp type III secretion pathway protein [Pseudomonas syringae pv. glycinea] Length = 268 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 84/159 (52%), Gaps = 10/159 (6%) Query: 50 NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 +L+ L D N + L++ +ID R + G ++V +S + +A L A GLP S Sbjct: 24 DLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQSR 83 Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 S ++F K +++ ++E R + AL E+ T I G++ ARVH+V+P+ + + Sbjct: 84 ASLGDIFKKEGV--ISTPLEERARYIYALSQELEATWSQIDGVIVARVHVVLPERIAPGE 141 Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202 +A+V I+ A++P + I+ +VA+++P + Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRG--RIQQMVASSIPGM 178 >gi|330812416|ref|YP_004356878.1| type III secretion protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380524|gb|AEA71874.1| putative type III secretion protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 295 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 84/164 (51%), Gaps = 12/164 (7%) Query: 51 LYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108 L+ L D N + L+ N++ ++ +G ++ V + + A L A GLP S + Sbjct: 24 LHSHLSEQDANEVIAELANKNVEASKQVDKDGLTVLVEPADMNSAVQVLEAAGLPRRSRS 83 Query: 109 SGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 S E+F K +++ M+E R + AL E+ T+ I G+V ARVH+V+P+ + + Sbjct: 84 SLGEIFRKEGV--ISTPMEERARYIYALSQELESTLSQIDGVVLARVHVVLPERVAPGEP 141 Query: 168 GARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNLDMGDVT 208 +ASV I+ A++P +R+LVA+ +P M D T Sbjct: 142 VQPASASVFIKHTNALDPD--SITPRVRNLVASGIPG--MADAT 181 >gi|27376924|ref|NP_768453.1| RhcJ protein [Bradyrhizobium japonicum USDA 110] gi|12620520|gb|AAG60796.1|AF322012_101 RhcJ [Bradyrhizobium japonicum] gi|27350066|dbj|BAC47078.1| RhcJ protein [Bradyrhizobium japonicum USDA 110] Length = 287 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 64/207 (30%), Positives = 99/207 (47%), Gaps = 18/207 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 K G+S GR L + +P++L + +LY K++ + N + L Sbjct: 5 MKRGSSGGRQSWRRLRVFLAMPLLLSLIG-------CKTDLYTKIQEREANEMLALLLGK 57 Query: 71 NID-FRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 +D R+ D S+I V + + L +GLP S + E+F S + S ++ Sbjct: 58 GVDAVRVVAKDGTSTIQVEEKQLAYSIDLLNVEGLPRQSFKNLGEVFK--GSGLVASPIE 115 Query: 128 EITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARP-TASVMIRAINPSVY 185 E R V AL E++RTI I G+++ARVH+V+P R+ GA P +ASV IR S Sbjct: 116 ERARYVYALSEELSRTISDIDGVLSARVHVVLPKNDLLRQ-GATPSSASVFIRH-GSSAR 173 Query: 186 KSA--EAIRHLVAAAVPNLDMGDVTVL 210 SA I+ LVA ++ L V V+ Sbjct: 174 LSALLPQIKMLVANSIEGLSYDKVAVV 200 >gi|227873553|ref|ZP_03991796.1| flagellar M-ring protein FliF [Oribacterium sinus F0268] gi|227840599|gb|EEJ50986.1| flagellar M-ring protein FliF [Oribacterium sinus F0268] Length = 557 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 56/241 (23%), Positives = 102/241 (42%), Gaps = 12/241 (4%) Query: 36 FMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARI 95 F+ AR Y L+ L + +I L E N+ + ++ VPS V R Sbjct: 35 FLLARG--QKTEYQTLFSSLSQGEAQQIVSLLQEQNVPYLYDGKSGALKVPSESVDTLRA 92 Query: 96 HLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVH 155 L ++G P S Y+++ + T ++ + L+ + TI+ G+ A+V Sbjct: 93 QLLSKGYPKSG--FAYDMYIGNSGLMTTESDKKQYTLYDLQDRLGATIRLFDGVRDAKVT 150 Query: 156 IVMPDMGSFRKIGARP---TASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVL 210 I ++ P +ASV++ K+AEAI++L+A +V ++ +V+V Sbjct: 151 IAEGTDQTYAIEDENPVQASASVVVTMEEGQSLSEKNAEAIKNLIARSVKGMNFTNVSVF 210 Query: 211 DSTGKLLTANEMERNILGKSLSIVQ---AIQHEIEMNINKALAAFLGVDNFRSAVVAELN 267 D+ A + + G S+ +++ I NI + L G +N +V LN Sbjct: 211 DAGTMEEVAADAGDSASGSGTSMANLTTTVENNIANNIKRVLGKIYGGENLAVSVKGTLN 270 Query: 268 M 268 M Sbjct: 271 M 271 >gi|229896277|ref|ZP_04511447.1| Flagellar M-ring protein fliF [Yersinia pestis Pestoides A] gi|229701200|gb|EEO89229.1| Flagellar M-ring protein fliF [Yersinia pestis Pestoides A] Length = 115 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 36/67 (53%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + SP Y LY L D I L++ NI +R +DNG ++ +P+ V + R+ LA Q Sbjct: 46 LWAKSPDYRVLYSNLSDRDGGDIVTQLTQLNIPYRFADNGGALLIPAEKVHETRLRLAQQ 105 Query: 101 GLPSSSS 107 GLP S Sbjct: 106 GLPKGGS 112 >gi|298487098|ref|ZP_07005148.1| type III secretion system lipoprotein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158341|gb|EFH99411.1| type III secretion system lipoprotein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 259 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 4/132 (3%) Query: 50 NLYVKLEVSDVNRISVALSEANIDF--RISDNGS-SISVPSSMVGKARIHLAAQGLPSSS 106 +LY L + N + L I ++ DNG + V +A L GLP S Sbjct: 26 DLYTNLGEREANAMLAVLLRDGIPASRKVQDNGQLKVMVDEKRFAQAMAALDDAGLPGQS 85 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 ++ E+F K N + + V AL E++ T+ I GI++ARVH+V+PD ++ Sbjct: 86 FSNMGEIF-KGNGLVSSPVQERAQMVYALSEELSHTVSQIDGILSARVHVVLPDNDLLKR 144 Query: 167 IGARPTASVMIR 178 + + +ASV++R Sbjct: 145 VISPSSASVLVR 156 >gi|16520038|ref|NP_444158.1| outermembrane protein RhcJ; component of type III secretion apparatus [Sinorhizobium fredii NGR234] gi|2497732|sp|P55714|NOLT_RHISN RecName: Full=Nodulation protein nolT; Flags: Precursor gi|2182731|gb|AAB91945.1| outermembrane protein RhcJ; component of type III secretion apparatus [Sinorhizobium fredii NGR234] Length = 289 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 69/133 (51%), Gaps = 6/133 (4%) Query: 50 NLYVKLEVSDVNRISVALSEANID-FRIS--DNGSSISVPSSMVGKARIHLAAQGLPSSS 106 +LY +L+ + N + L ++ +D R++ D S+I V ++ + L A+GLP S Sbjct: 37 DLYTQLQEREANEMLALLMDSGVDAVRVAGKDGTSTIQVDEKLLAFSIKLLNAKGLPRQS 96 Query: 107 SNSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 + E+F S + S +E R V AL E++ TI I G+ +ARVH+V+P R Sbjct: 97 FKNLGEIFQ--GSGLIASPTEERARYVYALSEELSHTISDIDGVFSARVHVVLPHNDLLR 154 Query: 166 KIGARPTASVMIR 178 +ASV IR Sbjct: 155 AGDTPSSASVFIR 167 >gi|170738287|ref|YP_001779547.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Burkholderia cenocepacia MC0-3] gi|169820475|gb|ACA95057.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia cenocepacia MC0-3] Length = 287 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/117 (36%), Positives = 61/117 (52%), Gaps = 11/117 (9%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSIS--VPSSMVGKARIHLAAQGLPSSS 106 LY L D N I AL +A ID + +D G + S V + + +A L GLP+ Sbjct: 34 LYGNLSEQDCNEIVAALLQAGIDAKKESADGGKTWSAKVDDAHIVQAMNVLREHGLPAHK 93 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPD 160 + +LF K GL S E RVR + G E+++T+ I G++ ARVHIV+PD Sbjct: 94 YDDLGDLFKK---DGLVSTPTE-ERVRFIYGVSQELSKTLSQIDGVMVARVHIVLPD 146 >gi|71734790|ref|YP_274723.1| type III secretion component [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555343|gb|AAZ34554.1| type III secretion component, putative [Pseudomonas syringae pv. phaseolicola 1448A] gi|320324510|gb|EFW80587.1| type III secretion component, putative [Pseudomonas syringae pv. glycinea str. B076] gi|320328370|gb|EFW84373.1| type III secretion component, putative [Pseudomonas syringae pv. glycinea str. race 4] gi|330882195|gb|EGH16344.1| type III secretion component [Pseudomonas syringae pv. glycinea str. race 4] Length = 259 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 4/132 (3%) Query: 50 NLYVKLEVSDVNRISVALSEANIDF--RISDNGS-SISVPSSMVGKARIHLAAQGLPSSS 106 +LY L + N + L I ++ DNG + V +A L GLP S Sbjct: 26 DLYTNLGEREANAMLAVLLRDGIPASRKVQDNGQLKVMVDEKRFAQAMAALDDAGLPGQS 85 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 ++ E+F K N + + V AL E++ T+ I GI++ARVH+V+PD ++ Sbjct: 86 FSNMGEVF-KGNGLVSSPVQERAQMVYALSEELSHTVSQIDGILSARVHVVLPDNDLLKR 144 Query: 167 IGARPTASVMIR 178 + + +ASV++R Sbjct: 145 VISPSSASVLVR 156 >gi|330985209|gb|EGH83312.1| type III secretion component [Pseudomonas syringae pv. lachrymans str. M301315] Length = 259 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 7/165 (4%) Query: 50 NLYVKLEVSDVNRISVALSEANIDF--RISDNGS-SISVPSSMVGKARIHLAAQGLPSSS 106 +LY L + N + L I ++ DNG + V +A L GLP S Sbjct: 26 DLYTNLGEREANAMLAVLLRDGIPASRKVQDNGQLKVMVDEKRFAQAMAALDDAGLPGQS 85 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 ++ E+F K N + + V AL E++ T+ I GI++ARVH+V+PD ++ Sbjct: 86 FSNMGEVF-KGNGLVSSPVQERAQMVYALSEELSHTVSQIDGILSARVHVVLPDNDLLKR 144 Query: 167 IGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTV 209 + + +ASV++R +P + I+ LVA + L V+V Sbjct: 145 VISPSSASVLVR-FDPRTDINVLIPQIKTLVANGISGLGYDGVSV 188 >gi|330876200|gb|EGH10349.1| type III secretion component [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 259 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 4/132 (3%) Query: 50 NLYVKLEVSDVNRISVALSEANIDF--RISDNGS-SISVPSSMVGKARIHLAAQGLPSSS 106 +LY L + N + L I ++ DNG + V +A L GLP S Sbjct: 26 DLYTNLGEREANAMLAVLLRDGIPASRKVQDNGQLKVMVDEKRFAQAMAALDDAGLPGQS 85 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 ++ E+F K N + + V AL E++ T+ I GI++ARVH+V+PD ++ Sbjct: 86 FSNMGEVF-KGNGLVSSPVQERAQMVYALSEELSHTVSQIDGILSARVHVVLPDNDLLKR 144 Query: 167 IGARPTASVMIR 178 + + +ASV++R Sbjct: 145 VISPSSASVLVR 156 >gi|197121159|ref|YP_002133110.1| secretory protein YscJ/FliF family protein [Anaeromyxobacter sp. K] gi|196171008|gb|ACG71981.1| secretory protein YscJ/FliF family protein [Anaeromyxobacter sp. K] Length = 239 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 7/134 (5%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRIS-----DNGSSISVPSSMVGKARIHLAAQGLP 103 + L L+ N + VAL E I + D G + V + +AR LA + LP Sbjct: 20 EALLHGLDEPQANDVLVALDEGGIAAEKAREDGADAGWEVRVAPADAVRARRVLAERDLP 79 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 +G++ S T+ + + AL GE+AR+I++I G+V ARVH+ +P Sbjct: 80 RQRP-AGFDAVLAKGSMVPTATEEHALYLHALSGELARSIEAIDGVVGARVHLGLPQADP 138 Query: 164 FRKIGARPTASVMI 177 FR G RP + Sbjct: 139 FRP-GERPAPRAAV 151 >gi|331008651|gb|EGH88707.1| type III secretion component [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 259 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 7/165 (4%) Query: 50 NLYVKLEVSDVNRISVALSEANIDF--RISDNGS-SISVPSSMVGKARIHLAAQGLPSSS 106 +LY L + N + L I ++ DNG + V +A L GLP S Sbjct: 26 DLYTNLGEREANAMLAVLLRDGIPASRKVQDNGQLKVMVDEKRFAQAMAALDDAGLPGQS 85 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 ++ E+F K N + + V AL E++ T+ I GI++ARVH+V+PD ++ Sbjct: 86 FSNMGEVF-KGNGLVSSPVQERAQMVYALSEELSHTVSQIDGILSARVHVVLPDNDLLKR 144 Query: 167 IGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTV 209 + + +ASV++R +P + I+ LVA + L V+V Sbjct: 145 VISPSSASVLVR-FDPRTDINVLIPQIKTLVANGISGLGYDGVSV 188 >gi|161520293|ref|YP_001583720.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Burkholderia multivorans ATCC 17616] gi|189353528|ref|YP_001949155.1| type III secretion protein SctJ [Burkholderia multivorans ATCC 17616] gi|160344343|gb|ABX17428.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia multivorans ATCC 17616] gi|189337550|dbj|BAG46619.1| type III secretion protein SctJ [Burkholderia multivorans ATCC 17616] Length = 293 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 59/173 (34%), Positives = 82/173 (47%), Gaps = 18/173 (10%) Query: 51 LYVKLEVSDVNRISVALSEANI------DFR-ISD-NGSSISVPSSMVGKARIHLAAQGL 102 LY L D N++ L +A I D R SD N +SV + A L A GL Sbjct: 36 LYSGLSEHDANQMIAVLGDAGISASKDNDARDASDRNAWQVSVADGDMQSALTVLQANGL 95 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMP 159 P S S ELF K GL S E RVR L G +++RT+Q I G++ ARV +V+P Sbjct: 96 PKPSYASLGELFQKQ---GLVSTPAE-ERVRYLYGVSQDLSRTLQDIEGVIVARVQVVIP 151 Query: 160 DMGSFRKIGARPTASVMIRAINPSVYKSAEA--IRHLVAAAVPNLDMGDVTVL 210 + +A+V IR P V A A ++ LVA ++ L +V++ Sbjct: 152 ENDPLADKIKPSSAAVYIR-YRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSLF 203 >gi|108759625|ref|YP_633790.1| YscJ/FliF family type III secretion lipoprotein [Myxococcus xanthus DK 1622] gi|108463505|gb|ABF88690.1| type III secretion lipoprotein, YscJ/FliF family [Myxococcus xanthus DK 1622] Length = 267 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 81/170 (47%), Gaps = 21/170 (12%) Query: 55 LEVSDVNRISVALSEANIDFR-ISDNGS----SISVPSSMVGKARIHLAAQGLPSSSSNS 109 L+ N + L E +D R + + G SI V A L+ GLP Sbjct: 28 LDERQANELQSVLVERGLDARKVPEAGKKPTWSIEVADEHASDAVRILSELGLPRPKEEV 87 Query: 110 GYELFDKVNSFGL--TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 G ++F GL T + + RVR +E + +T+QS+ G++ ARVH+V+P + ++ Sbjct: 88 GCDVF---GGGGLVRTPVEESVCRVRVMERSLEKTLQSVEGVLLARVHLVVP---APPRV 141 Query: 168 GARP---TASVMIRAINPS----VYKSAEAIRHLVAAAVPNLDMGDVTVL 210 G P AS M+R + P V +S+E ++ L+A V L V++L Sbjct: 142 GQAPGPSKASAMLR-VAPGNAARVRQSSETLKVLLAGGVEGLSPEAVSLL 190 >gi|7025353|gb|AAF35844.1|AF220002_1 flagellar M ring protein FliF [Rhodospirillum centenum] Length = 132 Score = 51.2 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 1/66 (1%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110 LY L+ ++ RI L + +++S G +I +P + + R+ LA QGLPS+ +G Sbjct: 29 LYAGLDDAEAGRILTQLQSMKVPYQVSGTGGAILLPQDQIARTRMLLAQQGLPSAGG-AG 87 Query: 111 YELFDK 116 YELFD+ Sbjct: 88 YELFDE 93 >gi|330963702|gb|EGH63962.1| type III secretion component [Pseudomonas syringae pv. actinidiae str. M302091] Length = 259 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 4/132 (3%) Query: 50 NLYVKLEVSDVNRISVALSEANIDF--RISDNGS-SISVPSSMVGKARIHLAAQGLPSSS 106 +LY L + N + L I ++ DNG + V +A L GLP S Sbjct: 26 DLYTNLGEREANAMLAVLLRDGIPASRKVQDNGQLKVMVDEKRFAQAMAALDDAGLPGQS 85 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 ++ E+F K N + + V AL E++ T+ I GI++ARVH+V+PD ++ Sbjct: 86 FSNMGEVF-KGNGLVSSPVQERAQMVYALSEELSHTVSQIDGILSARVHVVLPDNDLLKR 144 Query: 167 IGARPTASVMIR 178 + + +ASV++R Sbjct: 145 VISPSSASVLVR 156 >gi|221209594|ref|ZP_03582575.1| bcscJ [Burkholderia multivorans CGD1] gi|221170282|gb|EEE02748.1| bcscJ [Burkholderia multivorans CGD1] Length = 293 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 59/173 (34%), Positives = 82/173 (47%), Gaps = 18/173 (10%) Query: 51 LYVKLEVSDVNRISVALSEANI------DFR-ISD-NGSSISVPSSMVGKARIHLAAQGL 102 LY L D N++ L +A I D R SD N +SV + A L A GL Sbjct: 36 LYSGLSEHDANQMIAVLGDAGISASKDNDARDASDRNAWQVSVADGDMQSALTVLQANGL 95 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMP 159 P S S ELF K GL S E RVR L G +++RT+Q I G++ ARV +V+P Sbjct: 96 PKPSYASLGELFQKQ---GLVSTPAE-ERVRYLYGVSQDLSRTLQDIEGVIVARVQVVIP 151 Query: 160 DMGSFRKIGARPTASVMIRAINPSVYKSAEA--IRHLVAAAVPNLDMGDVTVL 210 + +A+V IR P V A A ++ LVA ++ L +V++ Sbjct: 152 ENDPLADKIKPSSAAVYIR-YRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSLF 203 >gi|221200558|ref|ZP_03573600.1| bcscJ [Burkholderia multivorans CGD2M] gi|221209215|ref|ZP_03582206.1| bcscJ [Burkholderia multivorans CGD2] gi|221170905|gb|EEE03361.1| bcscJ [Burkholderia multivorans CGD2] gi|221179899|gb|EEE12304.1| bcscJ [Burkholderia multivorans CGD2M] Length = 293 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 59/173 (34%), Positives = 82/173 (47%), Gaps = 18/173 (10%) Query: 51 LYVKLEVSDVNRISVALSEANI------DFR-ISD-NGSSISVPSSMVGKARIHLAAQGL 102 LY L D N++ L +A I D R SD N +SV + A L A GL Sbjct: 36 LYSGLSEHDANQMIAVLGDAGISASKDNDARDASDRNAWQVSVADGDMQSALTVLQANGL 95 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMP 159 P S S ELF K GL S E RVR L G +++RT+Q I G++ ARV +V+P Sbjct: 96 PKPSYASLGELFQKQ---GLVSTPAE-ERVRYLYGVSQDLSRTLQDIEGVIVARVQVVIP 151 Query: 160 DMGSFRKIGARPTASVMIRAINPSVYKSAEA--IRHLVAAAVPNLDMGDVTVL 210 + +A+V IR P V A A ++ LVA ++ L +V++ Sbjct: 152 ENDPLADKIKPSSAAVYIR-YRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSLF 203 >gi|38639339|gb|AAR25805.1| BcscJ [Burkholderia multivorans E243] Length = 293 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 59/173 (34%), Positives = 82/173 (47%), Gaps = 18/173 (10%) Query: 51 LYVKLEVSDVNRISVALSEANI------DFR-ISD-NGSSISVPSSMVGKARIHLAAQGL 102 LY L D N++ L +A I D R SD N +SV + A L A GL Sbjct: 36 LYSGLSEHDANQMIAVLGDAGISASKDNDARDASDRNAWQVSVADGDMQSALTVLQANGL 95 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMP 159 P S S ELF K GL S E RVR L G +++RT+Q I G++ ARV +V+P Sbjct: 96 PKPSYASLGELFQKQ---GLVSTPAE-ERVRYLYGVSQDLSRTLQDIEGVIVARVQVVIP 151 Query: 160 DMGSFRKIGARPTASVMIRAINPSVYKSAEA--IRHLVAAAVPNLDMGDVTVL 210 + +A+V IR P V A A ++ LVA ++ L +V++ Sbjct: 152 ENDPLADKIKPSSAAVYIR-YRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSLF 203 >gi|237678823|emb|CAQ57550.1| RhcJ protein [Bradyrhizobium elkanii] Length = 291 Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 81/166 (48%), Gaps = 7/166 (4%) Query: 50 NLYVKLEVSDVNRISVALSEANIDF-RI--SDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 +LY K++ + N + L +D R+ D S+I V + + L +GLP S Sbjct: 40 DLYSKIQEREANEMLALLLGKGVDAARVVAKDGTSTIQVEERQLAYSIDLLNVEGLPRQS 99 Query: 107 SNSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 + E+F S + S ++E R V AL E++RTI I G+++ARVH+V+P R Sbjct: 100 FKNLGEVFK--GSGLVASPIEERARYVYALSEELSRTISDIDGVLSARVHVVLPKNDLLR 157 Query: 166 KIGARPTASVMIR-AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 + +ASV IR N + I+ LVA ++ L V V+ Sbjct: 158 QDATPSSASVFIRHGSNAKLSALLPQIKMLVANSIEGLSYDKVAVV 203 >gi|218681694|ref|ZP_03529495.1| nodulation protein [Rhizobium etli CIAT 894] Length = 268 Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 11/140 (7%) Query: 24 ILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI-SDNGSS 82 +L ++ + LF+AA ++ L+ D V L A I + S+ G + Sbjct: 21 VLPKAAMLALCLFLAA-------CSQDVLTGLDQRDALDAQVLLERAGISVTMKSEKGGT 73 Query: 83 ISVPSSMVGKARI--HLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140 ++ + AR LA GLP S + ELF N F +T + Q+ A+E ++A Sbjct: 74 YAIAAETADHARAIELLAGAGLPRQSFGNVAELFPG-NGFLVTPYEQKARMSYAIEQQLA 132 Query: 141 RTIQSISGIVAARVHIVMPD 160 T+ + G+ ARVH+V+P+ Sbjct: 133 ETLSGLDGVATARVHVVLPE 152 >gi|257487964|ref|ZP_05642005.1| type III secretion component, putative [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 222 Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 5/138 (3%) Query: 75 RISDNGS-SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 ++ DNG + V +A L GLP S ++ E+F K N + + V Sbjct: 16 KVQDNGQLKVMVDEKRFAQAMAALDDAGLPGQSFSNMGEVF-KGNGLVSSPVQERAQMVY 74 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYKSAEAI 191 AL E++ T+ I GI++ARVH+V+PD +++ + +ASV++R +P + I Sbjct: 75 ALSEELSHTVSQIDGILSARVHVVLPDNDLLKRVISPSSASVLVR-FDPRTDINVLIPQI 133 Query: 192 RHLVAAAVPNLDMGDVTV 209 + LVA + L V+V Sbjct: 134 KTLVANGISGLGYDGVSV 151 >gi|289624381|ref|ZP_06457335.1| type III secretion component, putative [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646620|ref|ZP_06477963.1| type III secretion component, putative [Pseudomonas syringae pv. aesculi str. 2250] gi|330868635|gb|EGH03344.1| type III secretion component [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 259 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 7/165 (4%) Query: 50 NLYVKLEVSDVNRISVALSEANIDF--RISDNGS-SISVPSSMVGKARIHLAAQGLPSSS 106 +LY L + N + L I ++ DNG + V +A L GLP S Sbjct: 26 DLYTNLGEREANAMLAVLLRDGIPASRKVQDNGQLKVMVDEKRFVQAMAALDDAGLPGQS 85 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 ++ E+F K N + + V AL E++ T+ I GI++ARVH+V+PD ++ Sbjct: 86 FSNMGEIF-KGNGLVSSPVQERAQMVYALSEELSHTVSQIDGILSARVHVVLPDNDLLKR 144 Query: 167 IGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTV 209 + + +ASV++R +P + I+ LVA + L V+V Sbjct: 145 VISPSSASVLVR-FDPRTDINVLIPQIKTLVANGISGLGYDGVSV 188 >gi|462730|sp|P33209|NOLT_RHIFR RecName: Full=Nodulation protein nolT; Flags: Precursor gi|152385|gb|AAB17677.1| nodulation protein [Sinorhizobium fredii] gi|19749322|gb|AAL98692.1| NolT [Sinorhizobium fredii] Length = 289 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 6/133 (4%) Query: 50 NLYVKLEVSDVNRISVALSEANID-FRIS--DNGSSISVPSSMVGKARIHLAAQGLPSSS 106 +LY +L+ + N I L + +D R++ D S+I V ++ + L +GLP S Sbjct: 37 DLYTQLQEREANEIVALLMDNGVDAVRVAGKDGTSTIQVDEKLLAFSIKLLNGKGLPRQS 96 Query: 107 SNSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 + E+F S + S +E R V AL E++ TI I G+ +ARVH+V+P R Sbjct: 97 FKNLGEIFQ--GSGLIASPTEERARYVYALSEELSHTISDIDGVFSARVHVVLPHNDLLR 154 Query: 166 KIGARPTASVMIR 178 +ASV IR Sbjct: 155 AGDTPSSASVFIR 167 >gi|313634347|gb|EFS00945.1| flagellar M-ring protein FliF [Listeria seeligeri FSL N1-067] Length = 380 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 57/253 (22%), Positives = 108/253 (42%), Gaps = 38/253 (15%) Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLL----TANEMERNILGKSLSIVQAIQHEIEMNI 245 I+ V+AAVPN+ DV ++D+ ++ T E + + I AI ++ +I Sbjct: 17 GIQRTVSAAVPNVASEDVAIIDTKNGVISEADTTKEEGSSAYKNEVDIQNAIGKNVKTDI 76 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPES 304 L++ +DNFR +N D + Y D KV + + S D + T+ ES Sbjct: 77 EGTLSSIFALDNFRVNTSVTVNFDEIKQNTERYPNDGKVRSNQKDTSTDTSKGSTNTTES 136 Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 ++P+ ++ + ++K E +NYE+++ +I + L + ++ V V+ Sbjct: 137 GTAANADVPNYTEENGGDTNTY-TSEKSSETTNYELDS-TIQEIKKHPALAKTNVVVWVD 194 Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS--------------------RRGD 404 + +S + +D +AE K V + G+ + GD Sbjct: 195 Q--------QSLNNNGVD--MAEFTKAVGVSAGLTPNMATPEGAEEGATPTFEGTFQNGD 244 Query: 405 TITITSMDFLENQ 417 +TI + FL+NQ Sbjct: 245 -VTIMPIQFLDNQ 256 >gi|9885635|gb|AAG01458.1|AF282857_7 HrcJ [Pantoea stewartii subsp. stewartii] Length = 259 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 20/186 (10%) Query: 25 LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSIS 84 L S+IL+ ++L V H L +D N ++ L +I N I+ Sbjct: 6 LKSLILMSVLLLFGCNDQVELNH------GLTENDANEVAAELGRYHIKAEKHTNKDGIT 59 Query: 85 VPSSMVGKARIH-----LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEI 139 V MV A ++ L A GLP + + E+F K N T + + AL E+ Sbjct: 60 V---MVDTADLNRAVHILDAAGLPRPTRTNLGEVFQK-NGVISTPLEERARYIYALSQEV 115 Query: 140 ARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEAIRHLVA 196 T+ I G++ ARVH+V+P+ + + +A+V I+ ++P V + IR +VA Sbjct: 116 ESTLSQIDGVIVARVHVVLPERVAPGEPILPASAAVFIKYRPELDPDVIEP--RIRQMVA 173 Query: 197 AAVPNL 202 +++P L Sbjct: 174 SSLPGL 179 >gi|237800789|ref|ZP_04589250.1| type III secretion component [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023647|gb|EGI03704.1| type III secretion component [Pseudomonas syringae pv. oryzae str. 1_6] Length = 259 Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 4/132 (3%) Query: 50 NLYVKLEVSDVNRISVALSEANIDF--RISDNGS-SISVPSSMVGKARIHLAAQGLPSSS 106 +LY L + N + L I ++ DNG + V +A L GLP + Sbjct: 26 DLYTNLGEREANAMLAVLLRDGIPASRKVQDNGQLKVMVDEKRFAEAMAALDDAGLPGQT 85 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 ++ E+F K N + + V AL E++ T+ I GI++ARVH+V+PD ++ Sbjct: 86 FSNMGEVF-KGNGLVSSPVQERAQMVYALSEELSHTVSQIDGILSARVHVVLPDNDLLKR 144 Query: 167 IGARPTASVMIR 178 + + +ASV++R Sbjct: 145 VISPSSASVLVR 156 >gi|315301967|ref|ZP_07872962.1| flagellar M-ring protein FliF [Listeria ivanovii FSL F6-596] gi|313629662|gb|EFR97800.1| flagellar M-ring protein FliF [Listeria ivanovii FSL F6-596] Length = 380 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 57/253 (22%), Positives = 108/253 (42%), Gaps = 38/253 (15%) Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLL----TANEMERNILGKSLSIVQAIQHEIEMNI 245 I+ V+AAVPN+ DV ++D+ ++ T+ E + + I AI ++ +I Sbjct: 17 GIQRTVSAAVPNVASEDVAIIDTKNGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDI 76 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPES 304 L++ +DNFR +N D + Y D KV + + S D + T+ ES Sbjct: 77 EGTLSSIFALDNFRVNTSVTVNFDEIKQNTERYPNDGKVRSNQKDTSTDTSKGSTNTTES 136 Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 ++P+ ++ + ++K E +NYE+++ +I + L + ++ V V+ Sbjct: 137 GTAANADVPNYTEENGGDTNTY-TSEKSSETTNYELDS-TIQEIKKHPALAKTNVVVWVD 194 Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS--------------------RRGD 404 + L + +D +AE K V + G+ + GD Sbjct: 195 QQAL--------NNNGVD--MAEFTKAVGVSAGLTPNMATPEGAEEGATPTFEGTFQNGD 244 Query: 405 TITITSMDFLENQ 417 +TI + FL+NQ Sbjct: 245 -VTIMPIQFLDNQ 256 >gi|86157134|ref|YP_463919.1| secretory protein YscJ/FliF [Anaeromyxobacter dehalogenans 2CP-C] gi|85773645|gb|ABC80482.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Anaeromyxobacter dehalogenans 2CP-C] Length = 239 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/105 (36%), Positives = 56/105 (53%), Gaps = 9/105 (8%) Query: 114 FDKVNSFG---LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170 FD V + G T+ + + AL GE+AR+I++I G+V ARVH+ +P FR G R Sbjct: 86 FDAVLAKGSMVPTATEEHAMYLHALSGELARSIEAIDGVVGARVHLGLPQADPFRP-GER 144 Query: 171 PT--ASVMIRAINPSVYKSA---EAIRHLVAAAVPNLDMGDVTVL 210 P A+V++R + +R LVA A LD G V+V+ Sbjct: 145 PAPRAAVLVRCRAAACAAVRALEPGLRALVAGAADGLDAGAVSVV 189 >gi|171915741|ref|ZP_02931211.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Verrucomicrobium spinosum DSM 4136] Length = 248 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 67/153 (43%), Gaps = 10/153 (6%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS---DNGSSISVPSSM 89 I L + V+ L+ L + N + AL E ++ + ++ ++ V S Sbjct: 7 ITLCLCGLLLVSCAKQVPLFSDLREEEANEVMAALMERDVACTKTPGKEDKWALQVKSED 66 Query: 90 VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR---ALEGEIARTIQSI 146 A L A GLP S E+F K GL S E RVR AL E++ T I Sbjct: 67 FPFAMQTLQAMGLPRQSFQRMGEIFQKS---GLVSSPTE-ERVRFIYALSQELSETFMKI 122 Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 G+VAARVHI +PD + +A+V I+ Sbjct: 123 DGVVAARVHIALPDTDPLAEETNPASAAVFIKC 155 >gi|302185345|ref|ZP_07262018.1| putative type III secretion protein [Pseudomonas syringae pv. syringae 642] gi|256259415|gb|ACU65052.1| HrcJ [Pseudomonas syringae pv. syringae] Length = 276 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 90/173 (52%), Gaps = 14/173 (8%) Query: 50 NLYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 L+ KL +D N + LS +I+ R + G S+ + +S + +A L A GLP + Sbjct: 25 ELHGKLSENDANDVIAELSSKHIEATKRSNKEGVSVLLSASDINRAVRVLEAAGLPRRTR 84 Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + E+F K +++ ++E R + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 85 TNLGEIFKKEGV--ISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERVAPGE 142 Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 +A+V I+ +++P IR +V++++P G LD+T KL Sbjct: 143 PVQPASAAVFIKHAASLDPDTV--LPRIRRMVSSSIP----GMAGALDNTEKL 189 >gi|190894055|ref|YP_001984349.1| nodulation protein [Rhizobium etli CIAT 652] gi|190699716|gb|ACE93799.1| nodulation protein [Rhizobium etli CIAT 652] Length = 273 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 11/140 (7%) Query: 24 ILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI-SDNGSS 82 +L ++ + LF+AA ++ L+ D V L A I + S+ G + Sbjct: 18 VLPKAAMLALCLFLAA-------CSQDVLTGLDQRDALDAQVLLERAGISVTMKSEKGGT 70 Query: 83 ISVPSSMVGKARI--HLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140 ++ + AR LA GLP S + ELF N F +T + Q+ A E ++A Sbjct: 71 YAITAETADHARAIELLAGAGLPRQSFGNVAELFPG-NGFLVTPYEQKARMSYATEQQLA 129 Query: 141 RTIQSISGIVAARVHIVMPD 160 T+ + G+ ARVH+V+P+ Sbjct: 130 ETLSGLDGVATARVHVVLPE 149 >gi|229588272|ref|YP_002870391.1| putative type III secretion protein [Pseudomonas fluorescens SBW25] gi|229360138|emb|CAY46995.1| putative type III secretion protein [Pseudomonas fluorescens SBW25] Length = 271 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/173 (26%), Positives = 93/173 (53%), Gaps = 14/173 (8%) Query: 50 NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 L+ +L + N + L++ +I R + +G ++SV ++ +G+A L A GLP + Sbjct: 32 ELHRQLSEQEANEVIAELADKHIRARKIPTKDGVTVSVDTNDIGRAVRTLEAVGLPKLAR 91 Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + + F K +++ ++E R + AL E+ T+ +I G++ ARVH+V+P+ + + Sbjct: 92 ATLGDTFRKEGV--ISTPLEERARYIYALSQELEATLSNIDGVIVARVHVVLPERIAPGE 149 Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 +ASV I+ ++P ++ +R +VA+++P G T +D+ KL Sbjct: 150 PVQPASASVFIKHDPRLDPDNIRA--RVRRMVASSIP----GMTTAVDNPQKL 196 >gi|89255318|ref|NP_659983.2| nodulation protein [Rhizobium etli CFN 42] gi|89213272|gb|AAM54996.2| nodulation protein [Rhizobium etli CFN 42] Length = 273 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 11/140 (7%) Query: 24 ILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI-SDNGSS 82 +L ++ LF+AA ++ L+ D V L A I + S+ G + Sbjct: 18 VLPKAAMLAFCLFLAA-------CSQDVLTGLDQRDALDAQVLLERAGISVTMRSEKGGT 70 Query: 83 ISVPSSMVGKARI--HLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140 ++ + AR LA GLP S + ELF N F +T + Q+ A+E ++A Sbjct: 71 YAIAAESADHARAIELLAGAGLPRQSFGNVAELFPG-NGFLVTPYEQKARMSYAIEQQLA 129 Query: 141 RTIQSISGIVAARVHIVMPD 160 T+ + G+ ARVH+V+P+ Sbjct: 130 ETLSGLDGVATARVHVVLPE 149 >gi|119034700|gb|ABL59995.1| SctJ [Lysobacter enzymogenes] Length = 281 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 5/114 (4%) Query: 51 LYVKLEVSDVNRISVALSEANI----DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 LY +L+ N + AL +A I D S G + V + A L ++GLP + Sbjct: 45 LYSQLDEQQANELMAALLDAGIPAEKDPSPSKTGWEVMVNRGDIPYAMQVLNSRGLPRAQ 104 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 S E+F K F ++ ++ + L E++RT+ I G+V ARVHI +PD Sbjct: 105 YRSLGEVFKK-EGFASSALEEKARYLYGLSQELSRTLTRIDGVVEARVHIALPD 157 >gi|160939666|ref|ZP_02087014.1| hypothetical protein CLOBOL_04558 [Clostridium bolteae ATCC BAA-613] gi|158437457|gb|EDP15221.1| hypothetical protein CLOBOL_04558 [Clostridium bolteae ATCC BAA-613] Length = 535 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 57/248 (22%), Positives = 107/248 (43%), Gaps = 19/248 (7%) Query: 44 NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP 103 N+ Y L+ + + N I L + + +D G ++VP +G I ++ G P Sbjct: 51 NAGSYVTLFPGISREENNEILAVLGGRGVAAKRNDEGE-VTVPEDQLGDIMIEMSELGYP 109 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 ++ +++F F T F + + L+ + RT++ ++GI A V + +PD + Sbjct: 110 KTALP--FDIFSDNMGFTTTEFEKRQYLLMNLQDRLERTLKDMTGIKNAIVTLNVPDESA 167 Query: 164 F--RKIGARPTASVMIRAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 + + T SV + + PS S E AI++LVA +VP L VTV+++ T Sbjct: 168 YVWEDEDSGSTGSVSL-TLMPSYDLSPEKVSAIKNLVADSVPRLAPERVTVVNAE----T 222 Query: 219 ANEMERNILGKS------LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272 EM + +G + L ++ ++ I L D R + ++ D Sbjct: 223 MQEMVSDDIGNTAYGLNRLDFEAKVEERLQNKIKNVLTLAYSPDKIRVSATVVIDYDKMI 282 Query: 273 IREIVYDP 280 + Y+P Sbjct: 283 TENLEYEP 290 >gi|313639030|gb|EFS04021.1| flagellar M-ring protein FliF [Listeria seeligeri FSL S4-171] Length = 380 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 57/253 (22%), Positives = 107/253 (42%), Gaps = 38/253 (15%) Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLL----TANEMERNILGKSLSIVQAIQHEIEMNI 245 I+ V+AAVPN+ DV ++D+ ++ T E + + I AI ++ +I Sbjct: 17 GIQRTVSAAVPNVASEDVAIIDTKNGVISEADTTKEEGSSAYKNEVDIQNAIGKNVKTDI 76 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPES 304 L++ +DNFR +N D + Y D KV + + S D + T+ ES Sbjct: 77 EGTLSSIFALDNFRVNTSVTVNFDEIKQNTERYPNDGKVRSNQKDTSTDTSKGSTNTTES 136 Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 ++P+ ++ + ++K E +NYE+++ +I + L + ++ V V+ Sbjct: 137 GTASNADVPNYTEENGGDTNTY-TSEKSSETTNYELDS-TIQEIKKHPALAKTNVVVWVD 194 Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS--------------------RRGD 404 + L + +D +AE K V + G+ + GD Sbjct: 195 QQAL--------NNNGVD--MAEFTKAVGVSAGLTPNMATPEGAEEGATPTFEGTFQNGD 244 Query: 405 TITITSMDFLENQ 417 +TI + FL+NQ Sbjct: 245 -VTIMPIQFLDNQ 256 >gi|52631916|gb|AAU85366.1| nodulation protein [Sinorhizobium fredii] Length = 289 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 6/133 (4%) Query: 50 NLYVKLEVSDVNRISVALSEANID-FRIS--DNGSSISVPSSMVGKARIHLAAQGLPSSS 106 +LY +L+ + N + L + +D R++ D S+I V ++ + L +GLP S Sbjct: 37 DLYTQLQEREANEMLALLMDNGVDAVRVAGKDGTSTIQVDEKLLAFSIKLLNGKGLPRQS 96 Query: 107 SNSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 + E+F S + S +E R V AL E++ TI I G+ +ARVH+V+P R Sbjct: 97 FKNLGEIFQ--GSGLIASPTEERARYVYALSEELSHTISDIDGVFSARVHVVLPHNDLLR 154 Query: 166 KIGARPTASVMIR 178 +ASV IR Sbjct: 155 AGDTPSSASVFIR 167 >gi|307944360|ref|ZP_07659701.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Roseibium sp. TrichSKD4] gi|307772706|gb|EFO31926.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Roseibium sp. TrichSKD4] Length = 259 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 85/178 (47%), Gaps = 6/178 (3%) Query: 37 MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI--DFRISDNGSSISVPSSMVGKAR 94 + A F+ + LY L + N+I+ L +A I D +G SI V S A Sbjct: 13 LLACLFILAGCKVELYSNLSEQEANQIAATLIDAGISVDKEKLRDGVSILVADSEFANAV 72 Query: 95 IHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAAR 153 L GLP+ + E+F K S ++S +E R V AL E+ TI I G+++AR Sbjct: 73 NLLNENGLPARRYQNMGEIFQK--SGIVSSPTEEKARFVFALSQELENTIAEIDGVLSAR 130 Query: 154 VHIVMPDMGSFRKIGARPTASVMIRAINP-SVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 VH+V+P+ + +AS+ +R + V K I+ LV+ ++ L V+V+ Sbjct: 131 VHVVLPEEDILGRQTEPSSASLFVRHVEGVPVEKLIPRIKMLVSNSIEGLVYERVSVV 188 >gi|188532680|ref|YP_001906477.1| HrcJ protein (hrp cluster) [Erwinia tasmaniensis Et1/99] gi|188027722|emb|CAO95575.1| HrcJ protein (hrp cluster) [Erwinia tasmaniensis Et1/99] Length = 257 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 77/150 (51%), Gaps = 8/150 (5%) Query: 58 SDVNRISVALSEANI--DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115 +D N ++ L +I + R + +G ++ V + + +A L A GLP + + E+F Sbjct: 33 NDANEVAAELGRYHIQAEKRNNKDGITVLVNAEELNRAVHILDAAGLPRPARTNLGEVFQ 92 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 K N T + + AL E+ T+ I G++ ARVH+V+P+ + + +A+V Sbjct: 93 K-NGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAPGEPVQPASAAV 151 Query: 176 MIRA---INPSVYKSAEAIRHLVAAAVPNL 202 I+ ++P V + IR +VA+++P L Sbjct: 152 FIKYRPDLDPDVIEP--RIRRMVASSLPGL 179 >gi|120609169|ref|YP_968847.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Acidovorax citrulli AAC00-1] gi|58700620|gb|AAW81011.1| HrcJ [Acidovorax citrulli] gi|120587633|gb|ABM31073.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Acidovorax citrulli AAC00-1] Length = 287 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 12/169 (7%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSMVGKARIHLAAQGLPS 104 D+LY K +D N + AL E+ ID SD G + + V S V ++ L + GLP Sbjct: 33 DDLYTKQTEADANDMVAALLESGIDAGKATSDAGKTWNVQVEKSDVVRSLAVLRSYGLPR 92 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDM 161 + E+F K GL S E RVR + G ++ T+ I G+V ARV IV+P+ Sbjct: 93 ERHATLGEMFKKE---GLISTPTE-ERVRFIYGVAQQLEATLSQIDGVVTARVQIVLPNN 148 Query: 162 GSFRKIGARPTASVMIRAINPS-VYKSAEAIRHLVAAAVPNLDMGDVTV 209 +ASV I+ + + I+++VA +V L +VTV Sbjct: 149 DPLASTVKPASASVFIKYRESANIAGLTAGIKNMVARSVEGLTYENVTV 197 >gi|83647792|ref|YP_436227.1| type III secretory pathway, lipoprotein EscJ [Hahella chejuensis KCTC 2396] gi|83635835|gb|ABC31802.1| Type III secretory pathway, lipoprotein EscJ [Hahella chejuensis KCTC 2396] Length = 251 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 74/148 (50%), Gaps = 6/148 (4%) Query: 78 DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR-VRALE 136 D + +P V +A L QG P + E+F K ++S +E R + A+ Sbjct: 58 DQNVRLKLPEQQVARAISVLQRQGYPKQHFATMGEIFAKDGL--ISSPTEEKARFIYAIS 115 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLV 195 E++ T+ +I G++ ARVH+VM + F K TASV I+ + + ++ I+ LV Sbjct: 116 QELSHTLSNIDGVLVARVHVVMQEGDKFDKNPKPSTASVFIKYVEDAPIETLTPKIKALV 175 Query: 196 AAAVPNLDMGDVTV--LDSTGKLLTANE 221 + ++ LD V+V S+ K +T+ E Sbjct: 176 SNSILGLDYDQVSVALFPSSLKRITSPE 203 >gi|167567951|ref|ZP_02360867.1| type III secretion associated protein [Burkholderia oklahomensis EO147] gi|167573175|ref|ZP_02366049.1| type III secretion associated protein [Burkholderia oklahomensis C6786] Length = 260 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 11/135 (8%) Query: 51 LYVKLEVSDVNRISVALSEANIDF--RISDNGS--SISVPSSMVGKARIHLAAQGLPSSS 106 LY L DVN + VAL E +D +D G ++ V S + A L A+GLP S Sbjct: 18 LYGGLSEQDVNEMLVALLENGVDASKETADGGKNWTLGVESDQLVHAMGVLRARGLPRSK 77 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMGS 163 + LF K GL S E R+R + G E++ T+ I G++ ARV IV+P+ Sbjct: 78 FDDLGNLFKK---DGLVSTPTE-ERIRFIYGMSQELSSTLSKIDGVLVARVQIVLPNNDP 133 Query: 164 FRKIGARPTASVMIR 178 + +ASV I+ Sbjct: 134 LAQAAKPSSASVFIK 148 >gi|307725653|ref|YP_003908866.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia sp. CCGE1003] gi|307586178|gb|ADN59575.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia sp. CCGE1003] Length = 276 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 47/135 (34%), Positives = 65/135 (48%), Gaps = 11/135 (8%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRIS--DNGSS--ISVPSSMVGKARIHLAAQGLPSSS 106 LY L D N + VAL E +D S DNG S + V + +A L +GLP S Sbjct: 35 LYRNLTEQDANEMVVALLEQGVDASKSTVDNGKSWTLEVDDKQLVRAMQVLRERGLPHSR 94 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMGS 163 + LF K GL S E RVR + G E++ T+ I G++ ARV IV+P+ Sbjct: 95 YDDLGSLFKK---DGLVSTPTE-ERVRFIYGLSQELSATLSKIDGVIVARVQIVLPNNDP 150 Query: 164 FRKIGARPTASVMIR 178 + +ASV I+ Sbjct: 151 LAQQMKPSSASVFIK 165 >gi|327192836|gb|EGE59762.1| nodulation protein [Rhizobium etli CNPAF512] Length = 250 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 11/134 (8%) Query: 30 LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI-SDNGSSISVPSS 88 ++ LF+AA ++ L+ D V L A I + S+ G + ++ + Sbjct: 1 MLAFCLFLAA-------CSQDVLTGLDQRDALDAQVLLERAGISVTMRSEKGGTYAIAAE 53 Query: 89 MVGKARI--HLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146 AR LA GLP S + ELF N F +T + Q+ A+E ++A T+ + Sbjct: 54 SADHARAIELLAGAGLPRQSFGNVAELFPG-NGFLVTPYEQKARMSYAIEQQLAETLSGL 112 Query: 147 SGIVAARVHIVMPD 160 G+ ARVH+V+P+ Sbjct: 113 DGVATARVHVVLPE 126 >gi|320535381|ref|ZP_08035495.1| flagellar M-ring protein FliF [Treponema phagedenis F0421] gi|320147783|gb|EFW39285.1| flagellar M-ring protein FliF [Treponema phagedenis F0421] Length = 571 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 71/279 (25%), Positives = 128/279 (45%), Gaps = 27/279 (9%) Query: 12 KSGTSL----GRTRI---LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV---N 61 K+GT L G+ + L+LA VIL I + MA F +S + + +SD Sbjct: 11 KTGTKLKELWGKWSVVQKLVLAGVILAAI-IGMAVLFTWSSAPTTVPLIDVPISDEAARE 69 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGK-ARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +I + L+E NI +S G ISVP + R L + L + + + +FD V + Sbjct: 70 KIILRLNEENISASVSATGL-ISVPDEKTARRMRSILIREDLIPKNVDP-WAIFD-VERW 126 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 T F +++ RA+ + I+++ + A V I +P+ F K +P + ++ Sbjct: 127 TRTDFERKVDVRRAINKMVTDHIKALDDVDDANVIINVPEDTLF-KADQKPITASVVLFT 185 Query: 181 NP-----SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMER-NILGKS 230 P + K + I+ L+ AVP L ++T+ DS K+L +M+R ++ K Sbjct: 186 KPGSDIETDRKKIQGIQKLLKLAVPGLLDENITIADSNAKILNDFEGMKDMDRLTLIEKQ 245 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 ++ ++ + E+ I L G D R + +++MD Sbjct: 246 QKMIAKLETQYEIKILTLLQKTYGKDRVRDLNI-KIDMD 283 >gi|115360597|ref|YP_777734.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Burkholderia ambifaria AMMD] gi|115285925|gb|ABI91400.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia ambifaria AMMD] Length = 263 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 84/170 (49%), Gaps = 16/170 (9%) Query: 50 NLYVKLEVSDVNRISVALSEANIDFRIS--DNGSSISVPSSMVGKARIH----LAAQGLP 103 +LY +L SD N + AL + +D + S D G + SV S+ K +H L A+G+P Sbjct: 32 DLYGQLSESDCNEMVAALLSSGVDAQKSTPDGGKTWSV--SVDEKQIVHAVEVLRARGIP 89 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPD 160 + LF K GL S E RVR + G E+ T+ I G+V ARV IV+P+ Sbjct: 90 RKKFDDLGSLFKK---DGLVSTPTE-ERVRFIYGLSQELDDTLSKIDGVVVARVQIVLPN 145 Query: 161 MGSFRKIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209 + +ASV I+ + ++ + AI++LV ++ L V+V Sbjct: 146 NDPLAQSVKPSSASVFIKYRPDANLERMTPAIKNLVVHSIEGLTYDQVSV 195 >gi|326794378|ref|YP_004312198.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Marinomonas mediterranea MMB-1] gi|326545142|gb|ADZ90362.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Marinomonas mediterranea MMB-1] Length = 265 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 80/159 (50%), Gaps = 10/159 (6%) Query: 50 NLYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 L+ KL D N + L+ +I+ + + G ++ V +S + +A L A GLP Sbjct: 25 ELHKKLSEEDANEVIAELASRHIEAEKKATKEGVTVLVEASSMARAVRILEAAGLPRKPR 84 Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + E+F K ++S ++E R + AL E+ TI I GI+ ARVH+V+P+ + + Sbjct: 85 ANFGEVFKKEGV--ISSPLEERARYIYALSQELESTISQIDGILIARVHVVLPERIAPGE 142 Query: 167 IGARPTASVMIRA---INPSVYKSAEAIRHLVAAAVPNL 202 +++V I+ ++P V + I LV ++P L Sbjct: 143 AVQPASSAVFIKHRPDLDPDVIRP--RIERLVRTSIPGL 179 >gi|194350719|gb|ACF53790.1| HrcJ [Pantoea stewartii] Length = 146 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 14/152 (9%) Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIH-----LAAQGLPSSSSNSGYEL 113 D N ++ L +I N I+V MV A ++ L A GLP + + E+ Sbjct: 1 DANEVAAELGRYHIKAEKHTNKDGITV---MVDTADLNRAVHILDAAGLPRPTRTNLGEV 57 Query: 114 FDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTA 173 F K N T + + AL E+ T+ I G++ ARVH+V+P+ + + +A Sbjct: 58 FQK-NGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERVAPGEPILPASA 116 Query: 174 SVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202 +V I+ ++P V + IR +VA+++P L Sbjct: 117 AVFIKYRPELDPDVIEP--RIRQMVASSLPGL 146 >gi|170701293|ref|ZP_02892259.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia ambifaria IOP40-10] gi|170133816|gb|EDT02178.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia ambifaria IOP40-10] Length = 244 Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 83/170 (48%), Gaps = 16/170 (9%) Query: 50 NLYVKLEVSDVNRISVALSEANIDFRIS--DNGSSISVPSSMVGKARIH----LAAQGLP 103 LY +L SD N + AL + +D + S D G + SV S+ K +H L A+G+P Sbjct: 12 ELYGQLSESDCNEMVAALLSSGVDAQKSTPDGGKTWSV--SVDEKQIVHAVEVLRARGIP 69 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPD 160 + LF K GL S E RVR + G E+ T+ I G+V ARV IV+P+ Sbjct: 70 RKKFDDLGSLFKK---DGLVSTPTE-ERVRFIYGLSQELDDTLSKIDGVVVARVQIVLPN 125 Query: 161 MGSFRKIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209 + +ASV I+ + ++ + AI++LV ++ L V+V Sbjct: 126 NDPLAQSVKPSSASVFIKYRPDANLERMTPAIKNLVVHSIEGLTYDQVSV 175 >gi|187919914|ref|YP_001888945.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia phytofirmans PsJN] gi|187718352|gb|ACD19575.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia phytofirmans PsJN] Length = 273 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 89/189 (47%), Gaps = 31/189 (16%) Query: 27 SVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF---RISDNGSSI 83 ++I++P + + + +L+ LE N+I LS+ I+ R +D ++ Sbjct: 4 ALIMLPFLFLIGCK--------SSLFEGLEEDQANQIIAVLSQHGIEGVKDRSADKKWNV 55 Query: 84 SVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIA 140 SV V A LP + + +LF + GL S E RVR + G E++ Sbjct: 56 SVDVDDVVSATEITREYALPRDNHANLGDLFSRQ---GLISNPDE-DRVRYVYGLTQELS 111 Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-------AEAIRH 193 T++ I G++ ARVHIV P+ + A P+ASVM+R Y+S + IR+ Sbjct: 112 ETLEKIDGVLVARVHIVQPERDPLMRQVAPPSASVMLR------YRSDYNLEYMRDKIRN 165 Query: 194 LVAAAVPNL 202 LVA +V L Sbjct: 166 LVAGSVEGL 174 >gi|218458744|ref|ZP_03498835.1| nodulation protein [Rhizobium etli Kim 5] Length = 246 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 11/130 (8%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI-SDNGSSISVPSSMVGK 92 LF+AA ++ L+ D V L A I + S+ G + ++ + Sbjct: 1 CLFLAA-------CSQDVLTGLDQRDALDAQVLLERAGISVTMRSEKGGTYAIAAESADH 53 Query: 93 ARI--HLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 AR LA GLP S + ELF N F +T + Q+ A+E ++A T+ + G+ Sbjct: 54 ARAIELLAGAGLPRQSFENVAELFPG-NGFLVTPYEQKARMSYAIEQQLAETLSGLDGVA 112 Query: 151 AARVHIVMPD 160 ARVH+V+P+ Sbjct: 113 TARVHVVLPE 122 >gi|172064921|ref|YP_001815633.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Burkholderia ambifaria MC40-6] gi|171997163|gb|ACB68080.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia ambifaria MC40-6] Length = 264 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 83/169 (49%), Gaps = 16/169 (9%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRIS--DNGSSISVPSSMVGKARIH----LAAQGLPS 104 LY +L SD N + AL + +D + S D G + SV S+ K +H L A+G+P Sbjct: 33 LYGQLSESDCNEMVAALLSSGVDAQKSTPDGGKTWSV--SVDEKQIVHAVEVLRARGIPR 90 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDM 161 + LF K GL S E RVR + G E+ T+ I G+V ARV IV+P+ Sbjct: 91 KKFDDLGSLFKK---DGLVSTPTE-ERVRFIYGLSQELDDTLSKIDGVVVARVQIVLPNN 146 Query: 162 GSFRKIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209 + +ASV I+ + ++ + AI++LV ++ L V+V Sbjct: 147 DPLAQSVKPSSASVFIKYRPDANLERMTPAIKNLVVHSIEGLTYDQVSV 195 >gi|254469855|ref|ZP_05083260.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Pseudovibrio sp. JE062] gi|211961690|gb|EEA96885.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Pseudovibrio sp. JE062] Length = 267 Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust. Identities = 42/165 (25%), Positives = 78/165 (47%), Gaps = 7/165 (4%) Query: 50 NLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 +LY L + N + L E + + + D ++ V + +A L A GLP + Sbjct: 22 DLYTNLSEQEANTMLSLLLENGVSAQKVGLGDGLVTLQVDDDDIQRAVTILNANGLPKRA 81 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 ++ ++F K + F + I + AL E++ TI I GIV+ARVHIV+P+ + Sbjct: 82 RDTLGQVFQKSGIIS-SPFEERIRFIYALSEEVSETITEIDGIVSARVHIVLPEKADLGE 140 Query: 167 IGARPTASVMIRAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTV 209 +P+++ + P + I+ LV+ A+ ++ V+V Sbjct: 141 -EVKPSSAAIFIKHRPEFDIEFLIPQIKRLVSNAIEGVEYASVSV 184 >gi|167906939|ref|ZP_02494144.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei NCTC 13177] Length = 269 Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 18/170 (10%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIH----LAAQGLPS 104 LY L DVN + VAL E +D +D G S + ++ G +H L +GLP Sbjct: 27 LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKL--NVDGDQLVHAMEVLRTRGLPR 84 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDM 161 S + LF K GL S E R+R + G E++ T+ I G++ ARV IV+P+ Sbjct: 85 SKFDDLGNLFKK---DGLVSTPTE-ERIRFIYGMSQELSSTLSKIDGVLVARVQIVLPNN 140 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTV 209 + A+P+++ + PS +A I+ LV +V L V+V Sbjct: 141 DPLAQT-AKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTYDQVSV 189 >gi|167915298|ref|ZP_02502389.1| type III secretion associated protein [Burkholderia pseudomallei 112] Length = 262 Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 18/170 (10%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIH----LAAQGLPS 104 LY L DVN + VAL E +D +D G S + ++ G +H L +GLP Sbjct: 20 LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKL--NVDGDQLVHAMEVLRTRGLPR 77 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDM 161 S + LF K GL S E R+R + G E++ T+ I G++ ARV IV+P+ Sbjct: 78 SKFDDLGNLFKK---DGLVSTPTE-ERIRFIYGMSQELSSTLSKIDGVLVARVQIVLPNN 133 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTV 209 + A+P+++ + PS +A I+ LV +V L V+V Sbjct: 134 DPLAQT-AKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTYDQVSV 182 >gi|76818699|ref|YP_335583.1| lipoprotein transmembrane protein [Burkholderia pseudomallei 1710b] gi|76583172|gb|ABA52646.1| lipoprotein transmembrane protein [Burkholderia pseudomallei 1710b] Length = 262 Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 18/170 (10%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIH----LAAQGLPS 104 LY L DVN + VAL E +D +D G S + ++ G +H L +GLP Sbjct: 20 LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKL--NVDGDQLVHAMEVLRTRGLPR 77 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDM 161 S + LF K GL S E R+R + G E++ T+ I G++ ARV IV+P+ Sbjct: 78 SKFDDLGNLFKK---DGLVSTPTE-ERIRFIYGMSQELSSTLSKIDGVLVARVQIVLPNN 133 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTV 209 + A+P+++ + PS +A I+ LV +V L V+V Sbjct: 134 DPLAQT-AKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTYDQVSV 182 >gi|254186712|ref|ZP_04893228.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei Pasteur 52237] gi|254263992|ref|ZP_04954857.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 1710a] gi|157934396|gb|EDO90066.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei Pasteur 52237] gi|254214994|gb|EET04379.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 1710a] Length = 269 Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 18/170 (10%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIH----LAAQGLPS 104 LY L DVN + VAL E +D +D G S + ++ G +H L +GLP Sbjct: 27 LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKL--NVDGDQLVHAMEVLRTRGLPR 84 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDM 161 S + LF K GL S E R+R + G E++ T+ I G++ ARV IV+P+ Sbjct: 85 SKFDDLGNLFKK---DGLVSTPTE-ERIRFIYGMSQELSSTLSKIDGVLVARVQIVLPNN 140 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTV 209 + A+P+++ + PS +A I+ LV +V L V+V Sbjct: 141 DPLAQT-AKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTYDQVSV 189 >gi|126442940|ref|YP_001062988.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Burkholderia pseudomallei 668] gi|126458134|ref|YP_001075935.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Burkholderia pseudomallei 1106a] gi|167828530|ref|ZP_02460001.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 9] gi|226199084|ref|ZP_03794646.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei Pakistan 9] gi|242313688|ref|ZP_04812705.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 1106b] gi|254183797|ref|ZP_04890389.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 1655] gi|254193806|ref|ZP_04900238.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei S13] gi|254301608|ref|ZP_04969052.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 406e] gi|126222431|gb|ABN85936.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 668] gi|126231902|gb|ABN95315.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 1106a] gi|157811474|gb|EDO88644.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 406e] gi|169650557|gb|EDS83250.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei S13] gi|184214330|gb|EDU11373.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 1655] gi|225928859|gb|EEH24884.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei Pakistan 9] gi|242136927|gb|EES23330.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 1106b] Length = 269 Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 18/170 (10%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIH----LAAQGLPS 104 LY L DVN + VAL E +D +D G S + ++ G +H L +GLP Sbjct: 27 LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKL--NVDGDQLVHAMEVLRTRGLPR 84 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDM 161 S + LF K GL S E R+R + G E++ T+ I G++ ARV IV+P+ Sbjct: 85 SKFDDLGNLFKK---DGLVSTPTE-ERIRFIYGMSQELSSTLSKIDGVLVARVQIVLPNN 140 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTV 209 + A+P+++ + PS +A I+ LV +V L V+V Sbjct: 141 DPLAQT-AKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTYDQVSV 189 >gi|167898597|ref|ZP_02485998.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 7894] gi|237509740|ref|ZP_04522455.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei MSHR346] gi|235001945|gb|EEP51369.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei MSHR346] Length = 269 Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 18/170 (10%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIH----LAAQGLPS 104 LY L DVN + VAL E +D +D G S + ++ G +H L +GLP Sbjct: 27 LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKL--NVDGDQLVHAMEVLRTRGLPR 84 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDM 161 S + LF K GL S E R+R + G E++ T+ I G++ ARV IV+P+ Sbjct: 85 SKFDDLGNLFKK---DGLVSTPTE-ERIRFIYGMSQELSSTLSKIDGVLVARVQIVLPNN 140 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTV 209 + A+P+++ + PS +A I+ LV +V L V+V Sbjct: 141 DPLAQT-AKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTYDQVSV 189 >gi|167820155|ref|ZP_02451835.1| type III secretion associated protein [Burkholderia pseudomallei 91] Length = 262 Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 18/170 (10%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIH----LAAQGLPS 104 LY L DVN + VAL E +D +D G S + ++ G +H L +GLP Sbjct: 20 LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKL--NVDGDQLVHAMEVLRTRGLPR 77 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDM 161 S + LF K GL S E R+R + G E++ T+ I G++ ARV IV+P+ Sbjct: 78 SKFDDLGNLFKK---DGLVSTPTE-ERIRFIYGMSQELSSTLSKIDGVLVARVQIVLPNN 133 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTV 209 + A+P+++ + PS +A I+ LV +V L V+V Sbjct: 134 DPLAQT-AKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTYDQVSV 182 >gi|167724015|ref|ZP_02407251.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei DM98] gi|167849989|ref|ZP_02475497.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei B7210] Length = 262 Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 18/170 (10%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIH----LAAQGLPS 104 LY L DVN + VAL E +D +D G S + ++ G +H L +GLP Sbjct: 20 LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKL--NVDGDQLVHAMEVLRTRGLPR 77 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDM 161 S + LF K GL S E R+R + G E++ T+ I G++ ARV IV+P+ Sbjct: 78 SKFDDLGNLFKK---DGLVSTPTE-ERIRFIYGMSQELSSTLSKIDGVLVARVQIVLPNN 133 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTV 209 + A+P+++ + PS +A I+ LV +V L V+V Sbjct: 134 DPLAQT-AKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTYDQVSV 182 >gi|217425426|ref|ZP_03456920.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 576] gi|217391677|gb|EEC31705.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 576] Length = 274 Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 18/170 (10%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIH----LAAQGLPS 104 LY L DVN + VAL E +D +D G S + ++ G +H L +GLP Sbjct: 32 LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKL--NVDGDQLVHAMEVLRTRGLPR 89 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDM 161 S + LF K GL S E R+R + G E++ T+ I G++ ARV IV+P+ Sbjct: 90 SKFDDLGNLFKK---DGLVSTPTE-ERIRFIYGMSQELSSTLSKIDGVLVARVQIVLPNN 145 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTV 209 + A+P+++ + PS +A I+ LV +V L V+V Sbjct: 146 DPLAQT-AKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTYDQVSV 194 >gi|282890725|ref|ZP_06299245.1| type III secretion lipoprotein SctJ [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499318|gb|EFB41617.1| type III secretion lipoprotein SctJ [Parachlamydia acanthamoebae str. Hall's coccus] Length = 304 Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust. Identities = 57/199 (28%), Positives = 88/199 (44%), Gaps = 20/199 (10%) Query: 30 LVPIMLFMAARFFVNSPHYDNLYVK-LEVSDVNRISVALSEANID---FRISDNGSS--- 82 +V I+ + F + S + V + D N I V L+ NI+ S+ G + Sbjct: 5 IVKIVYLFISLFLLTSCSSERTIVHGIREQDANEIIVFLNSKNIESTKVESSEGGGTGPQ 64 Query: 83 ------ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA-L 135 I VP + A L +GLP S ++F +S + S QE R +A L Sbjct: 65 KAVFWDIQVPENKAMDAMSFLDEEGLPRKHQESLLDIFG--SSSLVPSETQERIRYQAGL 122 Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARP-TASVMIR---AINPSVYKSAEAI 191 +IA TI+ I G++ A V I P+ + P TASV I+ ++ + I Sbjct: 123 AQQIANTIKEIDGVIDANVMISFPEENPITGTTSGPITASVYIKHNGILDDPNSQLRSKI 182 Query: 192 RHLVAAAVPNLDMGDVTVL 210 R LVAA+V L +VT++ Sbjct: 183 RQLVAASVTGLKYDNVTII 201 >gi|310766432|gb|ADP11382.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation pathway-hrcJ protein [Erwinia sp. Ejp617] Length = 259 Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 14/153 (9%) Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIH-----LAAQGLPSSSSNSGYE 112 +D N ++ L +I N I+V MV A ++ L A GLP + + E Sbjct: 33 NDANEVAAELGRYHIQAEKLANKDGITV---MVDAAELNRAVHILDAAGLPRPARTNLGE 89 Query: 113 LFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPT 172 +F K N T + + AL E+ T+ I G++ ARVH+V+P+ + + + Sbjct: 90 VFQK-NGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAPGEPVQPAS 148 Query: 173 ASVMIRA---INPSVYKSAEAIRHLVAAAVPNL 202 A+V I+ ++P + + IR +VA+++P L Sbjct: 149 AAVFIKYRPDLDPDIIEP--RIRRMVASSLPGL 179 >gi|53722424|ref|YP_111409.1| type III secretion associated protein [Burkholderia pseudomallei K96243] gi|52212838|emb|CAH38872.1| putative type III secretion associated protein [Burkholderia pseudomallei K96243] Length = 274 Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 18/170 (10%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIH----LAAQGLPS 104 LY L DVN + VAL E +D +D G S + ++ G +H L +GLP Sbjct: 32 LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKL--NVDGDQLVHAMEVLRTRGLPR 89 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDM 161 S + LF K GL S E R+R + G E++ T+ I G++ ARV IV+P+ Sbjct: 90 SKFDDLGNLFKK---DGLVSTPTE-ERIRFIYGMSQELSSTLSKIDGVLVARVQIVLPNN 145 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTV 209 + A+P+++ + PS +A I+ LV +V L V+V Sbjct: 146 DPLAQT-AKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTYDQVSV 194 >gi|254253717|ref|ZP_04947034.1| Type III secretory pathway lipoprotein EscJ [Burkholderia dolosa AUO158] gi|124898362|gb|EAY70205.1| Type III secretory pathway lipoprotein EscJ [Burkholderia dolosa AUO158] Length = 263 Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 82/169 (48%), Gaps = 16/169 (9%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRIS--DNGSSISVPSSMVGKARIH----LAAQGLPS 104 LY +L SD N + AL + +D + S D G + SV + K +H L A+GLP Sbjct: 33 LYGQLTESDCNEMVAALLMSGVDAQKSTPDGGKTWSV--GVDEKQIVHAVEVLRARGLPR 90 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDM 161 + LF K GL S E RVR + G E+ T+ I G+V ARV IV+P+ Sbjct: 91 KKFDDLGSLFKK---DGLVSTPTE-ERVRFIYGLSQELDDTLSKIDGVVVARVQIVLPNN 146 Query: 162 GSFRKIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209 + +ASV I+ + ++ + AI++LV ++ L V+V Sbjct: 147 DPLAQSVKPSSASVFIKYRPDANLERMTPAIKNLVVHSIEGLTYDQVSV 195 >gi|167742984|ref|ZP_02415758.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 14] Length = 274 Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 18/170 (10%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIH----LAAQGLPS 104 LY L DVN + VAL E +D +D G S + ++ G +H L +GLP Sbjct: 32 LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKL--NVDGDQLVHAMEVLRTRGLPR 89 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDM 161 S + LF K GL S E R+R + G E++ T+ I G++ ARV IV+P+ Sbjct: 90 SKFDDLGNLFKK---DGLVSTPTE-ERIRFIYGMSQELSSTLSKIDGVLVARVQIVLPNN 145 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTV 209 + A+P+++ + PS +A I+ LV +V L V+V Sbjct: 146 DPLAQT-AKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTYDQVSV 194 >gi|259909704|ref|YP_002650060.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation pathway-hrcJ protein [Erwinia pyrifoliae Ep1/96] gi|76152302|gb|ABA39803.1| HrcJ [Erwinia pyrifoliae] gi|224965326|emb|CAX56858.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation pathway-hrcJ protein [Erwinia pyrifoliae Ep1/96] gi|283479790|emb|CAY75706.1| Type III secretion inner-membreane protein HrcJ [Erwinia pyrifoliae DSM 12163] Length = 259 Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 14/153 (9%) Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIH-----LAAQGLPSSSSNSGYE 112 +D N ++ L +I N I+V MV A ++ L A GLP + + E Sbjct: 33 NDANEVAAELGRYHIQAEKLANKDGITV---MVDAAELNRAVHILDAAGLPRPARTNLGE 89 Query: 113 LFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPT 172 +F K N T + + AL E+ T+ I G++ ARVH+V+P+ + + + Sbjct: 90 VFQK-NGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAPGEPVQPAS 148 Query: 173 ASVMIRA---INPSVYKSAEAIRHLVAAAVPNL 202 A+V I+ ++P + + IR +VA+++P L Sbjct: 149 AAVFIKYRPDLDPDIIEP--RIRRMVASSLPGL 179 >gi|14719872|gb|AAK73236.1| SctJ [Burkholderia pseudomallei] gi|48479054|gb|AAT44850.1| lipoprotein transmembrane protein [Burkholderia pseudomallei] Length = 274 Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 18/170 (10%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIH----LAAQGLPS 104 LY L DVN + VAL E +D +D G S + ++ G +H L +GLP Sbjct: 32 LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKL--NVDGDQLVHAMEVLRTRGLPR 89 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDM 161 S + LF K GL S E R+R + G E++ T+ I G++ ARV IV+P+ Sbjct: 90 SKFDDLGNLFKK---DGLVSTPTE-ERIRFIYGMSQELSSTLSKIDGVLVARVQIVLPNN 145 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTV 209 + A+P+++ + PS +A I+ LV +V L V+V Sbjct: 146 DPLAQT-AKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTYDQVSV 194 >gi|134282581|ref|ZP_01769285.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 305] gi|134246138|gb|EBA46228.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 305] Length = 269 Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 18/170 (10%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIH----LAAQGLPS 104 LY L DVN + VAL E +D +D G S + ++ G +H L +GLP Sbjct: 27 LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKL--NVDGDQLVHAMEVLRTRGLPR 84 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDM 161 S + LF K GL S E R+R + G E++ T+ I G++ ARV IV+P+ Sbjct: 85 SKFDDLGNLFKK---DGLVSTPTE-ERIRFIYGMSQELSSTLSKIDGVLVARVQIVLPNN 140 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTV 209 + A+P+++ + PS +A I+ LV +V L V+V Sbjct: 141 DPLAQT-AKPSSAAVFIKYRPSADITALTPQIKTLVMHSVEGLTYDQVSV 189 >gi|296103639|ref|YP_003613785.1| flagellar M-ring protein FliF [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058098|gb|ADF62836.1| flagellar M-ring protein FliF [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 268 Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 5/85 (5%) Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI-DSYLAEI 388 ++ +E +N+E++ I T + +++RLS+AVV+N L + G G I ++ L I Sbjct: 68 NRSDETTNFEVDRTLIHTKSNAGRIQRLSVAVVIN--HLPQ--GEEGKPGPISEAELTRI 123 Query: 389 NKIVSAATGINSRRGDTITITSMDF 413 N +V A G N+ RGD++ I + F Sbjct: 124 NALVKEAIGFNASRGDSVNILNSAF 148 >gi|146305070|ref|YP_001185535.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Pseudomonas mendocina ymp] gi|145573271|gb|ABP82803.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Pseudomonas mendocina ymp] Length = 272 Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 80/159 (50%), Gaps = 10/159 (6%) Query: 50 NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 +L+ L D N + +L E I R G ++V ++ + +A L A GLP + Sbjct: 23 DLFSGLSELDANEVIASLGEHRISARKRAEKAGVVVTVDTAEINRAVRVLEAAGLPRRAR 82 Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 S E+F K +++ ++E R + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 83 TSLGEIFKKEGV--ISTPLEERARYIYALSQELESTLSQIDGVIVARVHVVLPERIAPGE 140 Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202 +A+V I+ ++ P + I+ +V +++P L Sbjct: 141 PVQPASAAVFIKHAASLEPDAVQ--RRIQQMVVSSIPGL 177 >gi|15042153|gb|AAK81934.1|AF292566_18 RscJ [Pseudomonas fluorescens] Length = 271 Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust. Identities = 46/173 (26%), Positives = 94/173 (54%), Gaps = 14/173 (8%) Query: 50 NLYVKLEVSDVNRISVALSEANID-FRI-SDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 L+ +L + N + L++ +I +I + +G ++SV ++ +G+A L A GLP + Sbjct: 32 ELHRQLSEQEANEVIAELADKHIRALQIPTKDGVTVSVDTNDIGRAVRTLEAVGLPKLAR 91 Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + + F K +++ ++E R + AL E+ T+ +I G++ ARVH+V+P+ + + Sbjct: 92 ATLGDTFRKEGV--ISTPLEERARYIYALSQELEATLSNIDGVIVARVHVVLPERIAPGE 149 Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 +ASV I+ ++P ++ +R +VA+++P G T +D+ KL Sbjct: 150 PVQPASASVFIKHDPRLDPDNIRA--RVRRMVASSIP----GMTTAVDNPQKL 196 >gi|168334480|ref|ZP_02692651.1| flagellar M-ring protein FliF [Epulopiscium sp. 'N.t. morphotype B'] Length = 533 Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust. Identities = 45/178 (25%), Positives = 80/178 (44%), Gaps = 7/178 (3%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 F +SP LY L++ +++I L NI + + D G +I V + A+I L + Sbjct: 44 FFSSPQTAILYQNLDMEAISQIDEVLGANNITYELID-GRTIQVNEEDLNTAKIILTREN 102 Query: 102 LPSSSSNSGYELFDKV-NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP- 159 +P Y +D + NS T + + + ++ + + GI A V + +P Sbjct: 103 VPRGD----YTFYDAITNSMSTTEAEKRTKLIYLKQVDLENILMGMEGIAEATVQLNVPE 158 Query: 160 DMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 + SF +ASV++ E I L++ AV NL + ++T+LDS +L Sbjct: 159 EKNSFIASQMESSASVVLTLHRQISDNQIEGIARLLSNAVDNLKLENITILDSDSNVL 216 >gi|329889303|ref|ZP_08267646.1| hypothetical protein BDIM_09830 [Brevundimonas diminuta ATCC 11568] gi|328844604|gb|EGF94168.1| hypothetical protein BDIM_09830 [Brevundimonas diminuta ATCC 11568] Length = 240 Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 76/165 (46%), Gaps = 6/165 (3%) Query: 50 NLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSM--VGKARIHLAAQGLPSSSS 107 LY L D N + L +D + +G + + + +A L +G P + Sbjct: 23 ELYGGLTERDANEMVAVLKAQGLDASKTRDGDNWVLKADRGDFSRAVALLHDRGYPRQNF 82 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 S E+F K F + Q + + AL+ E+ +TI SI G+V ARVHI +P+ + Sbjct: 83 ASMGEVFQK-EGFVSSPMEQRMRMMYALQQELGQTISSIDGVVQARVHIAVPESDPLAQE 141 Query: 168 GARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVL 210 +ASV I+ P SA+ +I+ LV ++ L VTV+ Sbjct: 142 KPPSSASVFIKH-RPDYDISAQTGSIKALVVNSIEGLPYDKVTVV 185 >gi|312171103|emb|CBX79362.1| Type III secretion inner-membreane protein HrcJ [Erwinia amylovora ATCC BAA-2158] Length = 260 Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 75/150 (50%), Gaps = 8/150 (5%) Query: 58 SDVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115 +D N ++ L +I N G ++ V ++ + +A L A GLP + + E+F Sbjct: 33 NDANEVAAELGRYHIQAEKLTNKEGITVLVDAAELNRAVHILDAAGLPRPARTNLGEVFQ 92 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 K N T + + AL E+ T+ I G++ ARVH+V+P+ + + +A+V Sbjct: 93 K-NGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAPGEPVQPASAAV 151 Query: 176 MIRA---INPSVYKSAEAIRHLVAAAVPNL 202 I+ ++P V + IR +VA+++P L Sbjct: 152 FIKYRPDLDPDVIEP--RIRRMVASSLPGL 179 >gi|302670718|ref|YP_003830678.1| flagellar M-ring protein FliF [Butyrivibrio proteoclasticus B316] gi|302395191|gb|ADL34096.1| flagellar M-ring protein FliF [Butyrivibrio proteoclasticus B316] Length = 539 Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust. Identities = 52/224 (23%), Positives = 103/224 (45%), Gaps = 18/224 (8%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 A ++L ++ T+ +T I+ +V+L+ I++ + +N P Y L + + Sbjct: 7 AAWQKVLDWWNQFTAKQKTLIVGAGTVVLLTIIILVTV---LNQPQYVLLAQATSTKEAS 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN--S 119 I L +I++++SD+G V A + L A + S + D V S Sbjct: 64 EIKDLLDSNSINYKMSDDGLEFRVLKKDQANANLILGANDIQSYAYT-----IDNVTEGS 118 Query: 120 FGLTSFMQEITRVRALEGEIART-IQSISGIVAARVHIVMP-DMGSFRKIGARPTAS--V 175 F T + ++ V+ LE ++ + I +A V + +P D G+ IG + AS + Sbjct: 119 FSTTEYDKQKKYVKYLESKLEHDMLAKFDTIDSANVTLHIPDDDGTL--IGNKDEASAWI 176 Query: 176 MIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 ++ +P+ + ++A + VAA++ D+ +LD +G LL Sbjct: 177 LLNINDPNGFGEENANFVAKAVAASLGKKSTNDIVILDYSGNLL 220 >gi|194350691|gb|ACF53776.1| HrcJ [Brenneria lupinicola] Length = 146 Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 8/149 (5%) Query: 59 DVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 D N ++ L +I N G ++ V ++ + +A L A GLP + + E+F K Sbjct: 1 DANEVAAELGRYHIQAEKLTNKEGITVLVDAAELNRAVHILDAAGLPRPARTNLGEVFQK 60 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 N T + + AL E+ T+ I G++ ARVH+V+P+ + + +A+V Sbjct: 61 -NGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAPGEPVQPASAAVF 119 Query: 177 IRA---INPSVYKSAEAIRHLVAAAVPNL 202 I+ ++P V + IR +VA+++P L Sbjct: 120 IKYRPDLDPDVVEP--RIRRMVASSLPGL 146 >gi|292487032|ref|YP_003529902.1| type III secretion inner-membreane protein HrcJ [Erwinia amylovora CFBP1430] gi|292900583|ref|YP_003539952.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|1336088|gb|AAB49174.1| HrcJ [Erwinia amylovora] gi|291200431|emb|CBJ47559.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|291552449|emb|CBA19494.1| Type III secretion inner-membreane protein HrcJ [Erwinia amylovora CFBP1430] Length = 260 Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 75/150 (50%), Gaps = 8/150 (5%) Query: 58 SDVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115 +D N ++ L +I N G ++ V ++ + +A L A GLP + + E+F Sbjct: 33 NDANEVAAELGRYHIQAEKLTNKEGITVLVDAAELNRAVHILDAAGLPRPARTNLGEVFQ 92 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 K N T + + AL E+ T+ I G++ ARVH+V+P+ + + +A+V Sbjct: 93 K-NGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAPGEPVQPASAAV 151 Query: 176 MIRA---INPSVYKSAEAIRHLVAAAVPNL 202 I+ ++P V + IR +VA+++P L Sbjct: 152 FIKYRPDLDPDVIEP--RIRRMVASSLPGL 179 >gi|194350683|gb|ACF53772.1| HrcJ [Erwinia mallotivora] gi|194350685|gb|ACF53773.1| HrcJ [Erwinia mallotivora] gi|194350693|gb|ACF53777.1| HrcJ [Brenneria lupinicola] Length = 146 Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 8/149 (5%) Query: 59 DVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 D N ++ L +I N G ++ V ++ + +A L A GLP + + E+F K Sbjct: 1 DANEVAAELGRYHIQAEKLTNKEGITVLVDAAELNRAVHILDAAGLPRPARTNLGEVFQK 60 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 N T + + AL E+ T+ I G++ ARVH+V+P+ + + +A+V Sbjct: 61 -NGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAPGEPVQPASAAVF 119 Query: 177 IRA---INPSVYKSAEAIRHLVAAAVPNL 202 I+ ++P V + IR +VA+++P L Sbjct: 120 IKYRPDLDPDVIEP--RIRRMVASSLPGL 146 >gi|167923131|ref|ZP_02510222.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei BCC215] Length = 243 Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 81/170 (47%), Gaps = 18/170 (10%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIH----LAAQGLPS 104 +Y L DVN + VAL E +D +D G S + ++ G +H L +GLP Sbjct: 1 MYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKL--NVDGDQLVHAMEVLRTRGLPR 58 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDM 161 S + LF K GL S E R+R + G E++ T+ I G++ ARV IV+P+ Sbjct: 59 SKFDDLGNLFKK---DGLVSTPTE-ERIRFIYGMSQELSSTLSKIDGVLVARVQIVLPNN 114 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTV 209 + A+P+++ + PS +A I+ LV +V L V+V Sbjct: 115 DPLAQT-AKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTYDQVSV 163 >gi|194350699|gb|ACF53780.1| HrcJ [Erwinia pyrifoliae] Length = 146 Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 14/152 (9%) Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIH-----LAAQGLPSSSSNSGYEL 113 D N ++ L +I N I+V MV A ++ L A GLP + + E+ Sbjct: 1 DANEVAAELGRYHIQAEKLANKDGITV---MVDAAELNRAVHILDAAGLPRPARTNLGEV 57 Query: 114 FDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTA 173 F K N T + + AL E+ T+ I G++ ARVH+V+P+ + + +A Sbjct: 58 FQK-NGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAPGEPVQPASA 116 Query: 174 SVMIRA---INPSVYKSAEAIRHLVAAAVPNL 202 +V I+ ++P + + IR +VA+++P L Sbjct: 117 AVFIKYRPDLDPDIIEP--RIRRMVASSLPGL 146 >gi|13475299|ref|NP_106863.1| nodulation protein NOLT [Mesorhizobium loti MAFF303099] gi|14026050|dbj|BAB52649.1| nodulation protein; NolT [Mesorhizobium loti MAFF303099] Length = 279 Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 69/134 (51%), Gaps = 8/134 (5%) Query: 50 NLYVKLEVSDVNRISVALSEANID-FRIS--DNGSSISVPSSMVGKARIHLAAQGLPSSS 106 +LY +L+ + N + L + + R++ D S++ V ++ + L +GLP S Sbjct: 27 DLYTQLQEREANEMLALLMDNGVHAVRVAAKDGTSTVQVDEKLLAYSIDLLNGKGLPRQS 86 Query: 107 SNSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 + E+F S + S +E R V AL E++RTI I G+ + RVH+V+P R Sbjct: 87 FKNLGEIFQ--GSGLIASPTEERARYVYALSEELSRTISDIDGVFSVRVHVVLPHNDLLR 144 Query: 166 KIGARP-TASVMIR 178 GA P +ASV IR Sbjct: 145 A-GATPSSASVFIR 157 >gi|170690590|ref|ZP_02881757.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia graminis C4D1M] gi|170145025|gb|EDT13186.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia graminis C4D1M] Length = 282 Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust. Identities = 46/138 (33%), Positives = 66/138 (47%), Gaps = 15/138 (10%) Query: 50 NLYVKLEVSDVNRISVALSEANIDFRIS--DNGSSISVPSSMVGKARIH----LAAQGLP 103 LY L D N + VAL E +D S DNG + ++ + K +H L +GLP Sbjct: 40 ELYRNLTEQDANEMVVALLEQGVDASKSTIDNGKTWTL--EVDDKQLVHAMQVLRERGLP 97 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPD 160 S + LF K GL S E RVR + G E++ T+ I G++ ARV IV+P+ Sbjct: 98 HSRYDDLGSLFKK---DGLVSTPTE-ERVRFIYGLSQELSATLSKIDGVIVARVQIVLPN 153 Query: 161 MGSFRKIGARPTASVMIR 178 + +ASV I+ Sbjct: 154 NDPLAQQMKPSSASVFIK 171 >gi|323143306|ref|ZP_08077997.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Succinatimonas hippei YIT 12066] gi|322416923|gb|EFY07566.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Succinatimonas hippei YIT 12066] Length = 252 Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 85/198 (42%), Gaps = 15/198 (7%) Query: 21 RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR-ISD- 78 R L S +++ ML R + LY L SD N + L + +D + IS+ Sbjct: 2 RFKFLGSAVILSAMLLCGCR--------EALYSNLTESDANEMLSTLLQRGVDAKKISEG 53 Query: 79 -NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV-RALE 136 NG +I V + ++ + LP S +F ++S +E R+ AL Sbjct: 54 KNGFTIEVDEQDLVRSLEIIKEHSLPREQFQSLGSVFSGQGM--ISSQTEEQARLAYALS 111 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS-VYKSAEAIRHLV 195 E++ T I G++ ARVH+V+ + P+A+V IR S V +I+ Sbjct: 112 QELSATFSRIDGVLDARVHVVLVQHEQSSGVTTPPSAAVFIRHTKESPVVDMISSIKDTT 171 Query: 196 AAAVPNLDMGDVTVLDST 213 A +VP L V V+ T Sbjct: 172 ARSVPGLTHDRVAVMTET 189 >gi|171316789|ref|ZP_02906000.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia ambifaria MEX-5] gi|171098047|gb|EDT42863.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia ambifaria MEX-5] Length = 241 Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 6/165 (3%) Query: 50 NLYVKLEVSDVNRISVALSEANIDFRISDNGSS----ISVPSSMVGKARIHLAAQGLPSS 105 +LY L D N + AL E ID G+ +SVP A L +GLP Sbjct: 16 SLYENLTEQDANEMIAALFENGIDASKQRGGNGKFWMVSVPEGEFAGAINVLRDRGLPQE 75 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 + LF K + F T + + + L E++ TI +I G++ ARV IV+P+ Sbjct: 76 KRDDLGNLFKK-DGFVSTPTEERVRFLYGLSQELSSTISAIDGVMVARVQIVLPNNDPLA 134 Query: 166 KIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209 + +ASV I+ + SV + I+ LV +V L V+V Sbjct: 135 EQVKPSSASVFIKYNADSSVGQIVPQIKTLVVNSVEGLAYERVSV 179 >gi|323530318|ref|YP_004232470.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia sp. CCGE1001] gi|323387320|gb|ADX59410.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia sp. CCGE1001] Length = 282 Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust. Identities = 45/136 (33%), Positives = 65/136 (47%), Gaps = 11/136 (8%) Query: 50 NLYVKLEVSDVNRISVALSEANIDFRIS--DNGSS--ISVPSSMVGKARIHLAAQGLPSS 105 LY L D N + VAL E +D S DNG + + V + +A L +GLP + Sbjct: 40 ELYRNLTEQDANEMVVALLEQGVDASKSTVDNGKTWTLEVDDKQLVRAMQVLRERGLPHN 99 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMG 162 + LF K GL S E RVR + G E++ T+ I G++ ARV IV+P+ Sbjct: 100 RYDDLGSLFKK---DGLVSTPTE-ERVRFIYGLSQELSATLSKIDGVIVARVQIVLPNND 155 Query: 163 SFRKIGARPTASVMIR 178 + +ASV I+ Sbjct: 156 PLAQQMKPSSASVFIK 171 >gi|330819406|ref|YP_004348268.1| Type III secretion apparatus lipoprotein, YscJ/HrcJ family protein [Burkholderia gladioli BSR3] gi|327371401|gb|AEA62756.1| Type III secretion apparatus lipoprotein, YscJ/HrcJ family protein [Burkholderia gladioli BSR3] Length = 277 Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 60/117 (51%), Gaps = 11/117 (9%) Query: 51 LYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSMVGKARIHLAAQGLPSSS 106 LY L DVN + VAL E +D D G + + V + +A L ++GLP S Sbjct: 30 LYGNLSEQDVNEMVVALLENGVDAAKETPDGGKTWTLEVDGDQMVRAMEALRSRGLPKSR 89 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPD 160 ++ +LF K GL S E RVR + G E++ T+ I G++ ARV IV+P+ Sbjct: 90 FDNLGDLFKK---DGLVSTPTE-ERVRFIYGMSQELSSTLSKIDGVLVARVQIVLPN 142 >gi|195941355|ref|ZP_03086737.1| flagellar MS-ring protein [Borrelia burgdorferi 80a] gi|224533205|ref|ZP_03673805.1| flagellar M-ring protein FliF [Borrelia burgdorferi WI91-23] gi|226320592|ref|ZP_03796152.1| flagellar M-ring protein FliF [Borrelia burgdorferi 29805] gi|224511932|gb|EEF82333.1| flagellar M-ring protein FliF [Borrelia burgdorferi WI91-23] gi|226234011|gb|EEH32732.1| flagellar M-ring protein FliF [Borrelia burgdorferi 29805] gi|312149702|gb|ADQ29773.1| flagellar M-ring protein FliF [Borrelia burgdorferi N40] Length = 569 Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust. Identities = 51/236 (21%), Positives = 107/236 (45%), Gaps = 27/236 (11%) Query: 55 LEVSD---VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGY 111 +E+ D ++RIS L N+ + +S +G + K R L + L + + Sbjct: 56 VEIKDQYLLDRISQRLDRENVKYFLSSDGRIYLDDEKLAKKMRAILVREELVPVHMDP-W 114 Query: 112 ELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR------ 165 LFD ++ + +T F + I R++ + + I ++ + A V++VMP+ F+ Sbjct: 115 ALFD-IDRWTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKESQEPV 173 Query: 166 ----KIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---- 217 +I RP + ++ K E + L+ A+ L+ ++ ++D++G +L Sbjct: 174 KASVRITPRPGSDIITNR------KKVEGLVKLIQYAIEGLESDNIAIVDNSGTILNDFS 227 Query: 218 TANEMER-NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272 + ++R ++ K + + + I+ AL+ L VD F A V + +DT + Sbjct: 228 NLDGIDRIDLAEKERKLKLKYEAMLRSEIDSALSKVLSVDRFMIARV-NVKLDTSK 282 >gi|94496761|ref|ZP_01303336.1| hrp conserved lipoprotein hrcj transmembrane [Sphingomonas sp. SKA58] gi|94423774|gb|EAT08800.1| hrp conserved lipoprotein hrcj transmembrane [Sphingomonas sp. SKA58] Length = 246 Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 11/168 (6%) Query: 50 NLYVKLEVSDVNRISVALSEANIDFRIS---DNGSSISVPSSMVGKARIHLAAQGLPSSS 106 +Y +L+ N + AL +A+ID S D +++V KA L A+GLP Sbjct: 25 EIYGQLKEGQANDMIAALRDAHIDAAKSADKDGQWAVAVSPDDFSKAIQLLRAKGLPRED 84 Query: 107 SNSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 + LF+K ++S ++E R + L E++ T+ I G+V ARVH+ MP+ Sbjct: 85 FANLGSLFEKKGL--VSSPVEERARLIYGLSQELSHTVSEIDGVVQARVHLAMPEADPLS 142 Query: 166 -KIGARPTASVMIRAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVL 210 KI +P ++ + P + AI+ LV ++ L V+V+ Sbjct: 143 DKI--KPASAAIFVKYQPGYDLRSQTGAIKSLVTNSIEGLAYDKVSVV 188 >gi|224531746|ref|ZP_03672378.1| flagellar M-ring protein FliF [Borrelia valaisiana VS116] gi|224511211|gb|EEF81617.1| flagellar M-ring protein FliF [Borrelia valaisiana VS116] Length = 569 Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust. Identities = 53/245 (21%), Positives = 109/245 (44%), Gaps = 27/245 (11%) Query: 55 LEVSD---VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGY 111 +E+ D ++RIS L N+ + +S +G + K R L + L + + Sbjct: 56 VEIKDQYLLDRISQRLDRENVKYFLSSDGRIYLDDEKLAKKMRAILVREELVPIHMDP-W 114 Query: 112 ELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR------ 165 LFD ++ + +T F + I R++ + + I ++ + A V++VMP+ F+ Sbjct: 115 ALFD-IDRWTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKEAQEPV 173 Query: 166 ----KIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---- 217 +I RP + ++ K E + L+ A+ L+ ++ ++D++G +L Sbjct: 174 KASVRITPRPGSDIITNR------KKVEGLVKLIQYAIEGLESDNIAIVDNSGTILNDFS 227 Query: 218 TANEMER-NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVV-AELNMDTQQIRE 275 + ++R ++ K + + + I+ AL+ L VD F A V +L+ + I Sbjct: 228 NLDGIDRIDLAEKERKLKLKYEAMLRGEIDSALSKVLSVDRFMIARVNVKLDTSKETIES 287 Query: 276 IVYDP 280 Y P Sbjct: 288 KEYAP 292 >gi|15594636|ref|NP_212425.1| flagellar MS-ring protein [Borrelia burgdorferi B31] gi|216264746|ref|ZP_03436738.1| flagellar M-ring protein FliF [Borrelia burgdorferi 156a] gi|218249820|ref|YP_002374814.1| flagellar M-ring protein FliF [Borrelia burgdorferi ZS7] gi|221217640|ref|ZP_03589108.1| flagellar M-ring protein FliF [Borrelia burgdorferi 72a] gi|223888733|ref|ZP_03623324.1| flagellar M-ring protein FliF [Borrelia burgdorferi 64b] gi|224533718|ref|ZP_03674306.1| flagellar M-ring protein FliF [Borrelia burgdorferi CA-11.2a] gi|225549084|ref|ZP_03770059.1| flagellar M-ring protein FliF [Borrelia burgdorferi 94a] gi|225550193|ref|ZP_03771153.1| flagellar M-ring protein FliF [Borrelia burgdorferi 118a] gi|226321609|ref|ZP_03797135.1| flagellar M-ring protein FliF [Borrelia burgdorferi Bol26] gi|3915695|sp|Q44912|FLIF_BORBU RecName: Full=Flagellar M-ring protein gi|1165275|gb|AAA85614.1| FliF [Borrelia burgdorferi] gi|1196318|gb|AAB51410.1| flagellar basal body rod protein [Borrelia burgdorferi] gi|2688175|gb|AAC66657.1| flagellar basal-body rod protein (fliF) [Borrelia burgdorferi B31] gi|215981219|gb|EEC22026.1| flagellar M-ring protein FliF [Borrelia burgdorferi 156a] gi|218165008|gb|ACK75069.1| flagellar M-ring protein FliF [Borrelia burgdorferi ZS7] gi|221192317|gb|EEE18536.1| flagellar M-ring protein FliF [Borrelia burgdorferi 72a] gi|223885549|gb|EEF56648.1| flagellar M-ring protein FliF [Borrelia burgdorferi 64b] gi|224513011|gb|EEF83374.1| flagellar M-ring protein FliF [Borrelia burgdorferi CA-11.2a] gi|225369305|gb|EEG98758.1| flagellar M-ring protein FliF [Borrelia burgdorferi 118a] gi|225370310|gb|EEG99748.1| flagellar M-ring protein FliF [Borrelia burgdorferi 94a] gi|226232798|gb|EEH31551.1| flagellar M-ring protein FliF [Borrelia burgdorferi Bol26] gi|312147990|gb|ADQ30649.1| flagellar M-ring protein FliF [Borrelia burgdorferi JD1] Length = 569 Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust. Identities = 51/236 (21%), Positives = 107/236 (45%), Gaps = 27/236 (11%) Query: 55 LEVSD---VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGY 111 +E+ D ++RIS L N+ + +S +G + K R L + L + + Sbjct: 56 VEIKDQYLLDRISQRLDRENVKYFLSSDGRIYLDDEKLAKKMRAILVREELVPVHMDP-W 114 Query: 112 ELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR------ 165 LFD ++ + +T F + I R++ + + I ++ + A V++VMP+ F+ Sbjct: 115 ALFD-IDRWTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKESQEPV 173 Query: 166 ----KIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---- 217 +I RP + ++ K E + L+ A+ L+ ++ ++D++G +L Sbjct: 174 KASVRITPRPGSDIITNR------KKVEGLVKLIQYAIEGLESDNIAIVDNSGTILNDFS 227 Query: 218 TANEMER-NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272 + ++R ++ K + + + I+ AL+ L VD F A V + +DT + Sbjct: 228 NLDGIDRIDLAEKERKLKLKYEAMLRGEIDSALSKVLSVDRFMIARV-NVKLDTSK 282 >gi|238023713|ref|YP_002907945.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family protein [Burkholderia glumae BGR1] gi|237878378|gb|ACR30710.1| Type III secretion apparatus lipoprotein, YscJ/HrcJ family protein [Burkholderia glumae BGR1] Length = 280 Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 12/167 (7%) Query: 51 LYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSMVGKARIHLAAQGLPSSS 106 LY L DVN + VAL E +D D G + + V + +A L ++GLP S Sbjct: 30 LYGNLSEQDVNEMVVALLENGVDASKETPDAGKTWTLEVDGDQMVRAMEALRSRGLPKSR 89 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMGS 163 ++ +LF K GL S E RVR + G E++ T+ I G++ ARV IV+P+ Sbjct: 90 FDNLGDLFKK---DGLVSTPTE-ERVRFIYGMSQELSSTLSKIDGVLVARVQIVLPNNDP 145 Query: 164 FRKIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209 + +A+V I+ N V I+ LV +V L V+V Sbjct: 146 LAQTIKPSSAAVFIKYRPNSDVGALVPQIKTLVMHSVEGLTYDQVSV 192 >gi|89111146|dbj|BAE80236.1| HrcJ [Acidovorax avenae subsp. avenae] Length = 287 Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 81/169 (47%), Gaps = 12/169 (7%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSMVGKARIHLAAQGLPS 104 D+LY + +D N + AL E+ ID +D G + + V S V ++ L + GLP Sbjct: 33 DDLYTRQTEADANDMVAALLESGIDAGKASADAGKTWNVQVEKSDVVRSLAVLRSYGLPR 92 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDM 161 + E+F K GL S E RVR + G ++ T+ I G+V ARV IV+P+ Sbjct: 93 ERHATLGEMFKKE---GLISTPTE-ERVRFIYGVAQQLEATLSQIDGVVTARVQIVLPNN 148 Query: 162 GSFRKIGARPTASVMIRAINPS-VYKSAEAIRHLVAAAVPNLDMGDVTV 209 +ASV I+ + + I+++VA +V L +VTV Sbjct: 149 DPLASTVKPASASVFIKYRESANIAGLTAGIKNMVARSVEGLTYENVTV 197 >gi|227820519|ref|YP_002824490.1| type III secretion component, RhcJ protein [Sinorhizobium fredii NGR234] gi|227339518|gb|ACP23737.1| type III secretion component, RhcJ protein [Sinorhizobium fredii NGR234] Length = 267 Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust. Identities = 43/169 (25%), Positives = 80/169 (47%), Gaps = 13/169 (7%) Query: 50 NLYVKLEVSDVNR-ISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 +LY L+ + N ++ LS+ R+ D +++V + +A L GLP Sbjct: 29 DLYTNLDEREANEMVATLLSKGIAAGRVVQKDGKLTVTVDENEFSEAVTALNMAGLPKQK 88 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + +F + + + + AL E++RT+ I G+++ARVH+V+PD ++ Sbjct: 89 FATLGSVFQQ-EGLVASPVQERAQMIYALSEELSRTVSEIDGVLSARVHVVLPDNDPLQR 147 Query: 167 IGARPTASVMIRA-----INPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 +ASV IR +NP + + I+ LVA ++ L V+V+ Sbjct: 148 NAIPASASVFIRHEAGLDVNPLIPR----IKTLVANSISGLTYEKVSVV 192 >gi|111115116|ref|YP_709734.1| flagellar MS-ring protein [Borrelia afzelii PKo] gi|216264082|ref|ZP_03436076.1| flagellar M-ring protein FliF [Borrelia afzelii ACA-1] gi|110890390|gb|ABH01558.1| flagellar basal-body rod protein [Borrelia afzelii PKo] gi|215980126|gb|EEC20948.1| flagellar M-ring protein FliF [Borrelia afzelii ACA-1] Length = 569 Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust. Identities = 51/236 (21%), Positives = 106/236 (44%), Gaps = 27/236 (11%) Query: 55 LEVSD---VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGY 111 +E+ D ++RIS L N+ + +S +G + K R L + L + + Sbjct: 56 VEIKDQYLLDRISQRLDRENVKYFLSSDGRIYLDDEKLAKKMRAILVREELVPVHMDP-W 114 Query: 112 ELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR------ 165 LFD ++ + +T F + I R++ + + I ++ + A V++VMP+ F+ Sbjct: 115 ALFD-IDRWTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKESQEPV 173 Query: 166 ----KIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---- 217 +I RP + ++ K E + L+ A+ L+ ++ ++D++G +L Sbjct: 174 KASVRITPRPGSDIITNR------KKVEGLVKLIQYAIEGLESDNIAIVDNSGTILNDFS 227 Query: 218 TANEMER-NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272 + ++R ++ K + + + I+ AL L VD F A V + +DT + Sbjct: 228 NLDGIDRIDLAEKERKLKLKYEAMLRGEIDTALGKVLSVDRFMIARV-NVKLDTSK 282 >gi|220915860|ref|YP_002491164.1| secretory protein YscJ/FliF family protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219953714|gb|ACL64098.1| secretory protein YscJ/FliF family protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 239 Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 7/134 (5%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRIS-----DNGSSISVPSSMVGKARIHLAAQGLP 103 + L L+ N + VAL E I + D G + V ++ +AR LA + LP Sbjct: 20 EALLHGLDEPQANDVLVALDEGGIAAEKAREDGADAGWEVRVAAADAVRARRVLAERDLP 79 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 +G++ S T+ + + AL GE+AR+I++I G+V ARVH+ +P Sbjct: 80 RQRP-AGFDAVLAKGSMVPTATEEHALYLHALSGELARSIEAIDGVVGARVHLGLPQADP 138 Query: 164 FRKIGARPTASVMI 177 FR G RP + Sbjct: 139 FRP-GERPAPRAAV 151 >gi|15605288|ref|NP_220074.1| Yop proteins translocation lipoprotein J [Chlamydia trachomatis D/UW-3/CX] gi|76789296|ref|YP_328382.1| SctJ [Chlamydia trachomatis A/HAR-13] gi|237804910|ref|YP_002889064.1| type III secretion system protein, membrane component [Chlamydia trachomatis B/TZ1A828/OT] gi|3329000|gb|AAC68161.1| Yop proteins translocation lipoprotein J [Chlamydia trachomatis D/UW-3/CX] gi|76167826|gb|AAX50834.1| SctJ [Chlamydia trachomatis A/HAR-13] gi|231273210|emb|CAX10123.1| type III secretion system protein, membrane component [Chlamydia trachomatis B/TZ1A828/OT] gi|296436092|gb|ADH18266.1| type III secretion system protein, membrane component [Chlamydia trachomatis G/9768] gi|296437020|gb|ADH19190.1| type III secretion system protein, membrane component [Chlamydia trachomatis G/11222] gi|296437953|gb|ADH20114.1| type III secretion system protein, membrane component [Chlamydia trachomatis G/11074] gi|297140453|gb|ADH97211.1| type III secretion system protein, membrane component [Chlamydia trachomatis G/9301] Length = 326 Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust. Identities = 65/198 (32%), Positives = 94/198 (47%), Gaps = 31/198 (15%) Query: 34 MLFMAARFFVNSPHYDNLYVK-LEVSDVNRISVALSEANIDFR-----ISDNGSS----- 82 + F+ A FF ++ ++ L D N I V L + + S G S Sbjct: 10 LFFILALFFCSACDSRSMITHGLSGRDANEIVVLLVSKGVAAQKVPQAASSTGGSGEQLW 69 Query: 83 -ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT-SFMQEITRVRALEG--- 137 ISVP++ + +A L GLP S +LF K GL S MQE ++R EG Sbjct: 70 DISVPAAQITEALAILNQAGLPRMKGTSLLDLFAKQ---GLVPSEMQE--KIRYQEGLSE 124 Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARP-TASVMI--RAI--NPSVYKSAEAIR 192 ++A TI+ + GIV A V I S + RP TASV I R + NP+ ++ I+ Sbjct: 125 QMATTIRKMDGIVDASVQISF----SPEEEDQRPLTASVYIKHRGVLDNPNSIMVSK-IK 179 Query: 193 HLVAAAVPNLDMGDVTVL 210 LVA+AVP L +V+V+ Sbjct: 180 RLVASAVPGLCPENVSVV 197 >gi|255311377|ref|ZP_05353947.1| type III secretion system protein, membrane component [Chlamydia trachomatis 6276] gi|255317678|ref|ZP_05358924.1| type III secretion system protein, membrane component [Chlamydia trachomatis 6276s] Length = 326 Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust. Identities = 65/198 (32%), Positives = 94/198 (47%), Gaps = 31/198 (15%) Query: 34 MLFMAARFFVNSPHYDNLYVK-LEVSDVNRISVALSEANIDFR-----ISDNGSS----- 82 + F+ A FF ++ ++ L D N I V L + + S G S Sbjct: 10 LFFILALFFCSACDSRSMITHGLSGRDANEIVVLLVSKGVAAQKVPQAASSTGGSGEQLW 69 Query: 83 -ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT-SFMQEITRVRALEG--- 137 ISVP++ + +A L GLP S +LF K GL S MQE ++R EG Sbjct: 70 DISVPAAQITEALAILNQAGLPRMKGTSLLDLFAKQ---GLVPSEMQE--KIRYQEGLSE 124 Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARP-TASVMI--RAI--NPSVYKSAEAIR 192 ++A TI+ + GIV A V I S + RP TASV I R + NP+ ++ I+ Sbjct: 125 QMATTIRKMDGIVDASVQISF----SPEEEDQRPLTASVYIKHRGVLDNPNSIMVSK-IK 179 Query: 193 HLVAAAVPNLDMGDVTVL 210 LVA+AVP L +V+V+ Sbjct: 180 RLVASAVPGLCPENVSVV 197 >gi|326315351|ref|YP_004233023.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Acidovorax avenae subsp. avenae ATCC 19860] gi|89111179|dbj|BAE80268.1| HrcJ [Acidovorax avenae subsp. avenae] gi|323372187|gb|ADX44456.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 287 Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 81/169 (47%), Gaps = 12/169 (7%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSMVGKARIHLAAQGLPS 104 D+L+ + +D N + AL E+ ID SD G + + V S V ++ L + GLP Sbjct: 33 DDLFTRQTEADANDMVAALLESGIDAGKATSDAGKTWNVQVEKSDVVRSLAVLRSYGLPR 92 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDM 161 + E+F K GL S E RVR + G ++ T+ I G+V ARV IV+P+ Sbjct: 93 ERHATLGEMFKKE---GLISTPTE-ERVRFIYGVAQQLEATLSQIDGVVTARVQIVLPNN 148 Query: 162 GSFRKIGARPTASVMIRAINPS-VYKSAEAIRHLVAAAVPNLDMGDVTV 209 +A+V I+ + + I+++VA +V L +VTV Sbjct: 149 DPLASTVKPASAAVFIKYRESANIAGLTAGIKNMVARSVEGLTYENVTV 197 >gi|255348939|ref|ZP_05380946.1| type III secretion system protein, membrane component [Chlamydia trachomatis 70] gi|255503478|ref|ZP_05381868.1| type III secretion system protein, membrane component [Chlamydia trachomatis 70s] gi|255507156|ref|ZP_05382795.1| type III secretion system protein, membrane component [Chlamydia trachomatis D(s)2923] gi|289525604|emb|CBJ15082.1| type III secretion system protein, membrane component [Chlamydia trachomatis Sweden2] gi|296435164|gb|ADH17342.1| type III secretion system protein, membrane component [Chlamydia trachomatis E/150] gi|296438884|gb|ADH21037.1| type III secretion system protein, membrane component [Chlamydia trachomatis E/11023] Length = 326 Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust. Identities = 65/198 (32%), Positives = 94/198 (47%), Gaps = 31/198 (15%) Query: 34 MLFMAARFFVNSPHYDNLYVK-LEVSDVNRISVALSEANIDFR-----ISDNGSS----- 82 + F+ A FF ++ ++ L D N I V L + + S G S Sbjct: 10 LFFILALFFCSACDSRSMITHGLSGRDANEIVVLLVSKGVAAQKVPQAASSTGGSGEQLW 69 Query: 83 -ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT-SFMQEITRVRALEG--- 137 ISVP++ + +A L GLP S +LF K GL S MQE ++R EG Sbjct: 70 DISVPAAQITEALAILNQAGLPRMKGTSLLDLFAKQ---GLVPSEMQE--KIRYQEGLSE 124 Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARP-TASVMI--RAI--NPSVYKSAEAIR 192 ++A TI+ + GIV A V I S + RP TASV I R + NP+ ++ I+ Sbjct: 125 QMATTIRKMDGIVDASVQISF----SPEEEDQRPLTASVYIKHRGVLDNPNSIMVSK-IK 179 Query: 193 HLVAAAVPNLDMGDVTVL 210 LVA+AVP L +V+V+ Sbjct: 180 RLVASAVPGLCPENVSVV 197 >gi|297748689|gb|ADI51235.1| type III secretion cytoplasmic membrane protein SctJ [Chlamydia trachomatis D-EC] gi|297749569|gb|ADI52247.1| type III secretion cytoplasmic membrane protein SctJ [Chlamydia trachomatis D-LC] Length = 333 Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust. Identities = 65/198 (32%), Positives = 94/198 (47%), Gaps = 31/198 (15%) Query: 34 MLFMAARFFVNSPHYDNLYVK-LEVSDVNRISVALSEANIDFR-----ISDNGSS----- 82 + F+ A FF ++ ++ L D N I V L + + S G S Sbjct: 17 LFFILALFFCSACDSRSMITHGLSGRDANEIVVLLVSKGVAAQKVPQAASSTGGSGEQLW 76 Query: 83 -ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT-SFMQEITRVRALEG--- 137 ISVP++ + +A L GLP S +LF K GL S MQE ++R EG Sbjct: 77 DISVPAAQITEALAILNQAGLPRMKGTSLLDLFAKQ---GLVPSEMQE--KIRYQEGLSE 131 Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARP-TASVMI--RAI--NPSVYKSAEAIR 192 ++A TI+ + GIV A V I S + RP TASV I R + NP+ ++ I+ Sbjct: 132 QMATTIRKMDGIVDASVQISF----SPEEEDQRPLTASVYIKHRGVLDNPNSIMVSK-IK 186 Query: 193 HLVAAAVPNLDMGDVTVL 210 LVA+AVP L +V+V+ Sbjct: 187 RLVASAVPGLCPENVSVV 204 >gi|237802988|ref|YP_002888182.1| type III secretion system protein, membrane component [Chlamydia trachomatis B/Jali20/OT] gi|231274222|emb|CAX11016.1| type III secretion system protein, membrane component [Chlamydia trachomatis B/Jali20/OT] Length = 326 Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust. Identities = 65/198 (32%), Positives = 94/198 (47%), Gaps = 31/198 (15%) Query: 34 MLFMAARFFVNSPHYDNLYVK-LEVSDVNRISVALSEANIDFR-----ISDNGSS----- 82 + F+ A FF ++ ++ L D N I V L + + S G S Sbjct: 10 LFFILALFFCSACDSRSMITHGLSGRDANEIVVLLVSKGVAAQKVPQAASSTGGSGEQLW 69 Query: 83 -ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT-SFMQEITRVRALEG--- 137 ISVP++ + +A L GLP S +LF K GL S MQE ++R EG Sbjct: 70 DISVPAAQITEALAILNQAGLPRMKGTSLLDLFAKQ---GLVPSEMQE--KIRYQEGLSE 124 Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARP-TASVMI--RAI--NPSVYKSAEAIR 192 ++A TI+ + GIV A V I S + RP TASV I R + NP+ ++ I+ Sbjct: 125 QMATTIRKMDGIVDASVQISF----SPEEEDQRPLTASVYIKYRGVLDNPNSIMVSK-IK 179 Query: 193 HLVAAAVPNLDMGDVTVL 210 LVA+AVP L +V+V+ Sbjct: 180 RLVASAVPGLCPENVSVV 197 >gi|194350695|gb|ACF53778.1| HrcJ [Erwinia psidii] Length = 146 Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 73/149 (48%), Gaps = 8/149 (5%) Query: 59 DVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 D N ++ L +I N G ++ V ++ + +A L A GLP + + E+F K Sbjct: 1 DANEVAAELGRYHIQAEKLTNKEGITVLVDAAELNRAVHILDAAGLPRPARTNLGEVFQK 60 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 T + + AL E+ T+ I G++ ARVH+V+P+ + + +A+V Sbjct: 61 DGVIS-TPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAPGEPVQPASAAVF 119 Query: 177 IRA---INPSVYKSAEAIRHLVAAAVPNL 202 I+ ++P V + IR +VA+++P L Sbjct: 120 IKYRPDLDPDVIEP--RIRRMVASSLPGL 146 >gi|51598551|ref|YP_072739.1| flagellar MS-ring protein [Borrelia garinii PBi] gi|51573122|gb|AAU07147.1| flagellar basal-body rod protein [Borrelia garinii PBi] Length = 569 Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust. Identities = 50/236 (21%), Positives = 107/236 (45%), Gaps = 27/236 (11%) Query: 55 LEVSD---VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGY 111 +E+ D ++RIS L N+ + +S +G + K R L + L + + Sbjct: 56 VEIKDQYLLDRISQRLDRENVKYFLSSDGRIYLDDEKLAKKMRAILVREELVPVHMDP-W 114 Query: 112 ELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR------ 165 LFD ++ + +T F + I R++ + + I ++ + A V++VMP+ F+ Sbjct: 115 ALFD-IDRWTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKEAQEPV 173 Query: 166 ----KIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---- 217 +I RP + ++ K E + L+ A+ L+ ++ ++D++G +L Sbjct: 174 KASVRITPRPGSDIITNR------KKVEGLVKLIQYAIEGLESDNIAIVDNSGTILNDFS 227 Query: 218 TANEMER-NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272 + ++R ++ K + + + I+ AL+ L +D F A V + +DT + Sbjct: 228 NLDGIDRIDLAEKERKLKLKYEAMLRGEIDSALSKVLSIDRFMIARV-NVKLDTSK 282 >gi|330982829|gb|EGH80932.1| flagellar MS-ring protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 317 Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust. Identities = 58/256 (22%), Positives = 107/256 (41%), Gaps = 64/256 (25%) Query: 313 PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN-------- 364 P+ +D++V + N+E++ T +L RLS+AVVV+ Sbjct: 102 PYPADKRV------------QSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAA 149 Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF-------LENQ 417 G ++ +AD LA ++V A G ++ RGD++++ ++ F L Sbjct: 150 NGEVSRAPWSAAD-------LARFTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEA 202 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR-LHNIDDAKKGEV-- 474 F S Q F DI+ + VG + + L LR L+NI + K+ E+ Sbjct: 203 SFYS---QPWFWDIVKQA-----------VGVIFILILVFGVLRPVLNNITNGKRKELAG 248 Query: 475 -GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 GG + L G + ND ++L Q I L S Y ++ + ++ Sbjct: 249 FGGDAELG----GMGGLDGELSNDRVSL-GGPQSIL-----LPSPTEGYDAQLNAIK--S 296 Query: 534 MIEINEERFAKILRKW 549 ++ + R A+++++W Sbjct: 297 LVAEDPGRVAQVVKEW 312 >gi|219685754|ref|ZP_03540565.1| flagellar M-ring protein FliF [Borrelia garinii Far04] gi|219672693|gb|EED29721.1| flagellar M-ring protein FliF [Borrelia garinii Far04] Length = 569 Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust. Identities = 50/236 (21%), Positives = 107/236 (45%), Gaps = 27/236 (11%) Query: 55 LEVSD---VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGY 111 +E+ D ++RIS L N+ + +S +G + K R L + L + + Sbjct: 56 VEIKDQYLLDRISQRLDRENVKYFLSSDGRIYLDDEKLAKKMRAILVREELVPVHMDP-W 114 Query: 112 ELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR------ 165 LFD ++ + +T F + I R++ + + I ++ + A V++VMP+ F+ Sbjct: 115 ALFD-IDRWTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKEAQEPV 173 Query: 166 ----KIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---- 217 +I RP + ++ K E + L+ A+ L+ ++ ++D++G +L Sbjct: 174 KASVRITPRPGSDIITNR------KKVEGLVKLIQYAIEGLESDNIAIVDNSGTILNDFS 227 Query: 218 TANEMER-NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272 + ++R ++ K + + + I+ AL+ L +D F A V + +DT + Sbjct: 228 NLDGIDRIDLAEKERKLKLKYEAMLRGEIDSALSKVLSIDRFMIARV-NVKLDTSK 282 >gi|219684584|ref|ZP_03539527.1| flagellar M-ring protein FliF [Borrelia garinii PBr] gi|219671946|gb|EED29000.1| flagellar M-ring protein FliF [Borrelia garinii PBr] Length = 569 Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust. Identities = 50/236 (21%), Positives = 107/236 (45%), Gaps = 27/236 (11%) Query: 55 LEVSD---VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGY 111 +E+ D ++RIS L N+ + +S +G + K R L + L + + Sbjct: 56 VEIKDQYLLDRISQRLDRENVKYFLSSDGRIYLDDEKLAKKMRAILVREELVPVHMDP-W 114 Query: 112 ELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR------ 165 LFD ++ + +T F + I R++ + + I ++ + A V++VMP+ F+ Sbjct: 115 ALFD-IDRWTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKEAQEPV 173 Query: 166 ----KIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---- 217 +I RP + ++ K E + L+ A+ L+ ++ ++D++G +L Sbjct: 174 KASVRITPRPGSDIITNR------KKVEGLVKLIQYAIEGLESDNIAIVDNSGTILNDFS 227 Query: 218 TANEMER-NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272 + ++R ++ K + + + I+ AL+ L +D F A V + +DT + Sbjct: 228 NLDGIDRIDLAEKERKLKLKYEAMLRGEIDSALSKVLSIDRFMIARV-NVKLDTSK 282 >gi|310823558|ref|YP_003955916.1| type III secretion lipoprotein, yscj/flif family [Stigmatella aurantiaca DW4/3-1] gi|309396630|gb|ADO74089.1| Type III secretion lipoprotein, YscJ/FliF family [Stigmatella aurantiaca DW4/3-1] Length = 267 Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust. Identities = 41/164 (25%), Positives = 76/164 (46%), Gaps = 9/164 (5%) Query: 55 LEVSDVNRISVALSEANIDFR-ISDNGS----SISVPSSMVGKARIHLAAQGLPSSSSNS 109 L+ N + L E ++ R + + G SI V + A LA GLP + + Sbjct: 28 LDERQANELQTVLLERGLEARKVPEAGKKPSWSIEVDEAQASAAVRILAELGLPRPVAET 87 Query: 110 GYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA 169 G ++F + T +++ R R LE I +T+Q + G++ ARVH+++P + Sbjct: 88 GCDVFGG-GALLRTPIEEQLCRTRVLERGIEKTLQGMEGVLVARVHLMVPPPARPGHAPS 146 Query: 170 RPTASVMIRAINPS---VYKSAEAIRHLVAAAVPNLDMGDVTVL 210 AS ++R + + +S + ++ L+A V L V++L Sbjct: 147 AAKASALLRTASGQADRLRQSQDRLQALIAGGVEGLSPEAVSLL 190 >gi|227328506|ref|ZP_03832530.1| type III secretion protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 255 Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 72/136 (52%), Gaps = 8/136 (5%) Query: 75 RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR-VR 133 R+ G ++ + + + +A L A GLP S + E+F K S +++ ++E R + Sbjct: 50 RVDKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK--SGVISTPLEERARYIY 107 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEA 190 AL E+ T+ I G++ ARVH+V+P+ + + +A+V I+ + P + + Sbjct: 108 ALSQEVEATLAQIDGVLVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGME--QR 165 Query: 191 IRHLVAAAVPNLDMGD 206 IR +VA+++P L D Sbjct: 166 IRRMVASSIPGLSGKD 181 >gi|225552378|ref|ZP_03773318.1| flagellar M-ring protein FliF [Borrelia sp. SV1] gi|225371376|gb|EEH00806.1| flagellar M-ring protein FliF [Borrelia sp. SV1] Length = 569 Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust. Identities = 51/236 (21%), Positives = 106/236 (44%), Gaps = 27/236 (11%) Query: 55 LEVSD---VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGY 111 +E+ D ++RIS L N+ + +S +G + K R L + L + + Sbjct: 56 VEIKDQYLLDRISQRLDRENVKYFLSSDGRIYLDDEKLAKKMRAILVREELVPVHMDP-W 114 Query: 112 ELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR------ 165 LFD ++ + +T F + I R++ + + I ++ + A V++VMP+ F+ Sbjct: 115 ALFD-IDRWTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKESQEPV 173 Query: 166 ----KIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---- 217 +I RP + ++ K E + L+ A+ L+ ++ ++D+ G +L Sbjct: 174 KASVRITPRPGSDIITNR------KKVEGLVKLIQYAIEGLESDNIAIVDNRGTILNDFS 227 Query: 218 TANEMER-NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272 + ++R ++ K + + + I+ AL+ L VD F A V + +DT + Sbjct: 228 NLDGIDRIDLAEKERKLKLKYEAMLRGEIDSALSKVLSVDRFMIARV-NVKLDTSK 282 >gi|227114184|ref|ZP_03827840.1| type III secretion protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 255 Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 72/136 (52%), Gaps = 8/136 (5%) Query: 75 RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR-VR 133 R+ G ++ + + + +A L A GLP S + E+F K S +++ ++E R + Sbjct: 50 RVDKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK--SGVISTPLEERARYIY 107 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEA 190 AL E+ T+ I G++ ARVH+V+P+ + + +A+V I+ + P + + Sbjct: 108 ALSQEVEATLAQIDGVLVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGME--QR 165 Query: 191 IRHLVAAAVPNLDMGD 206 IR +VA+++P L D Sbjct: 166 IRRMVASSIPGLSGKD 181 >gi|160880849|ref|YP_001559817.1| flagellar M-ring protein FliF [Clostridium phytofermentans ISDg] gi|160429515|gb|ABX43078.1| flagellar M-ring protein FliF [Clostridium phytofermentans ISDg] Length = 531 Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust. Identities = 57/233 (24%), Positives = 103/233 (44%), Gaps = 12/233 (5%) Query: 52 YVKL-EVSDVNRISVA---LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 YV+L ++ D S A L E I +++ D+G ++ V +S +A++ +A + S + Sbjct: 50 YVELIKLEDTKTASQAIDILKENGIAYQLKDDGVTVLVDNSKKTEAKLLIADSEIASKAK 109 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 S +L + N T++ ++ +G++ ++ GI AR+ + D S Sbjct: 110 LSLEQLLN--NDMSTTNYDKQTKLHLYYQGDLEELLKKQEGIDDARISYLPSDKRSSILE 167 Query: 168 GARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMER 224 + + + IN KS AEAI VA ++ N V V+D G LL + E Sbjct: 168 QEKEISCSIFLTINSKFKKSSAEAIAITVANSLGNETTNKVKVIDQYGNLLYNGPEDEES 227 Query: 225 NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD--TQQIRE 275 K+L QA+ + + + G D + ++N D T++IRE Sbjct: 228 EYTNKNLEFRQAVLGDYTERVVR-FGLMNGFDYVEPSFALDINFDKTTEEIRE 279 >gi|166154774|ref|YP_001654892.1| type III secretion system protein, membrane component [Chlamydia trachomatis 434/Bu] gi|301336048|ref|ZP_07224292.1| type III secretion system protein, membrane component [Chlamydia trachomatis L2tet1] gi|165930762|emb|CAP04259.1| type III secretion system protein, membrane component [Chlamydia trachomatis 434/Bu] Length = 325 Score = 44.7 bits (104), Expect = 0.047, Method: Compositional matrix adjust. Identities = 63/197 (31%), Positives = 92/197 (46%), Gaps = 30/197 (15%) Query: 34 MLFMAARFFVNSPHYDNLYVK-LEVSDVNRISVALSEANIDFR-----ISDNGSS----- 82 + F+ A FF ++ ++ L D N I V L + + S G S Sbjct: 10 LFFILALFFCSACDSRSMITHGLSGRDANEIVVLLVSKGVAAQKVPQAASSTGGSGEQLW 69 Query: 83 -ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT-SFMQEITRVRALEG--- 137 ISVP++ + +A L GLP S +LF K GL S MQE ++R EG Sbjct: 70 DISVPAAQITEALAILNQAGLPRMKGTSLLDLFSKQ---GLVPSEMQE--KIRYQEGLSE 124 Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI--RAI--NPSVYKSAEAIRH 193 ++A TI+ + GIV A V I R + TASV I R + NP+ ++ I+ Sbjct: 125 QMATTIRKMDGIVDASVQISFSPEEDQRPL----TASVYIKHRGVLDNPNSIMVSK-IKR 179 Query: 194 LVAAAVPNLDMGDVTVL 210 LVA+AVP L +V+V+ Sbjct: 180 LVASAVPGLYPENVSVV 196 >gi|167030900|gb|ABZ05768.1| HrcJ [Pectobacterium carotovorum subsp. carotovorum] Length = 212 Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 72/136 (52%), Gaps = 8/136 (5%) Query: 75 RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR-VR 133 R+ G ++ + + + +A L A GLP S + E+F K S +++ ++E R + Sbjct: 50 RMDKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK--SGVISTPLEERARYIY 107 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEA 190 AL E+ T+ I G++ ARVH+V+P+ + + +A+V I+ + P + + Sbjct: 108 ALSQEVEATLAQIDGVLVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGME--QR 165 Query: 191 IRHLVAAAVPNLDMGD 206 IR +VA+++P L D Sbjct: 166 IRRMVASSIPGLSGKD 181 >gi|330940716|gb|EGH43724.1| flagellar MS-ring protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 251 Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust. Identities = 60/271 (22%), Positives = 110/271 (40%), Gaps = 73/271 (26%) Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 T QP A P+ +D++V + N+E++ T +L RLS Sbjct: 29 TGQPALA-------PYPADKRV------------QSTKNFELDRSISHTKQQQGRLTRLS 69 Query: 359 IAVVVN--------KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 +AVVV+ G ++ +AD LA ++V A G ++ RGD++++ + Sbjct: 70 VAVVVDDMVKTNAANGEVSRAPWSAAD-------LARFTRLVQDAVGFDASRGDSVSVIN 122 Query: 411 MDF-------LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR- 462 + F L F S Q F DI+ + VG + + L LR Sbjct: 123 VPFSSERAEVLPEASFYS---QPWFWDIVKQA-----------VGVIFILILVFGVLRPV 168 Query: 463 LHNIDDAKKGEV---GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF-SHSRNLQSR 518 L+NI + K+ E+ GG + L G + ND ++L + S + ++ Sbjct: 169 LNNITNGKRKELAGFGGDAELG----GMGGLDGELSNDRVSLGGPQSILLPSPTEGYDAQ 224 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKW 549 +N+ S ++ + R A+++++W Sbjct: 225 LNAIKS---------LVAEDPGRVAQVVKEW 246 >gi|166155649|ref|YP_001653904.1| type III secretion system protein, membrane component [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|165931637|emb|CAP07213.1| type III secretion system protein, membrane component [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 325 Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust. Identities = 63/197 (31%), Positives = 92/197 (46%), Gaps = 30/197 (15%) Query: 34 MLFMAARFFVNSPHYDNLYVK-LEVSDVNRISVALSEANIDFR-----ISDNGSS----- 82 + F+ A FF ++ ++ L D N I V L + + S G S Sbjct: 10 LFFILALFFCSACDSRSMITHGLSGRDANEIVVLLVSKGVAAQKVPQAASSTGGSGEQLW 69 Query: 83 -ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT-SFMQEITRVRALEG--- 137 ISVP++ + +A L GLP S +LF K GL S MQE ++R EG Sbjct: 70 DISVPAAQITEALAILNQAGLPRMKGTSLLDLFSKQ---GLVPSEMQE--KIRYQEGLSE 124 Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI--RAI--NPSVYKSAEAIRH 193 ++A TI+ + GIV A V I R + TASV I R + NP+ ++ I+ Sbjct: 125 QMATTIRKMDGIVDASVQISFSPEEDQRPL----TASVYIKHRGVLDNPNSIMVSK-IKR 179 Query: 194 LVAAAVPNLDMGDVTVL 210 LVA+AVP L +V+V+ Sbjct: 180 LVASAVPGLYPENVSVV 196 >gi|218133660|ref|ZP_03462464.1| hypothetical protein BACPEC_01529 [Bacteroides pectinophilus ATCC 43243] gi|217991035|gb|EEC57041.1| hypothetical protein BACPEC_01529 [Bacteroides pectinophilus ATCC 43243] Length = 542 Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust. Identities = 46/233 (19%), Positives = 103/233 (44%), Gaps = 10/233 (4%) Query: 43 VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL 102 VN P Y+ L + + ++ L++ +I + ++DN + V + A++ LA+ + Sbjct: 44 VNRPQYETLTTCSSYAQMQEVTNLLTDNSISYNVADNSMVVKVRKEDLTNAKMALASSNI 103 Query: 103 PSSSSNSGYELFDKVN-SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 S GY + D ++ SF T ++ + LE + ++S G+ A V + + + Sbjct: 104 QS----DGYTIEDALSGSFSTTENDKQKKWQKYLESKFKTDLESFDGVKEASVTVTLGEA 159 Query: 162 GS-FRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTG-KLLTA 219 + + T V+++ + A + L+A +V N ++T++ + G L + Sbjct: 160 TNIYYSTKQEATVGVVLQLTKQIDDEVAAGMAQLLATSVGNKTTDNITIISTDGTTLFSK 219 Query: 220 NEMERNILGKS---LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 ++ + ++ G S L+ Q +IE +I L + ++N+D Sbjct: 220 SDTDLSVSGTSTVGLNGRLKYQSQIESSITSHLRQGMLATGLYDEAYVQMNLD 272 >gi|325273533|ref|ZP_08139766.1| flagellar MS-ring protein [Pseudomonas sp. TJI-51] gi|324101334|gb|EGB98947.1| flagellar MS-ring protein [Pseudomonas sp. TJI-51] Length = 154 Score = 44.3 bits (103), Expect = 0.051, Method: Composition-based stats. Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 1/101 (0%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92 + + A + P Y LY L D ++ L+ A+I + + N ++ V S + + Sbjct: 50 VAIGFAVVLWSQQPDYRPLYGSLSGMDTKQVMDTLAAADIPYNVEPNSGALLVKSDDLAR 109 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 AR+ LAA G+ S N G+EL DK G + FM E TR R Sbjct: 110 ARLKLAAAGVAPSDGNVGFELLDKEQGLGTSQFM-EATRYR 149 >gi|253688582|ref|YP_003017772.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755160|gb|ACT13236.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 255 Score = 44.3 bits (103), Expect = 0.055, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 71/136 (52%), Gaps = 8/136 (5%) Query: 75 RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR-VR 133 R+ G ++ + + + +A L A GLP S + E+F K S +++ ++E R + Sbjct: 50 RVDKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK--SGVISTPLEERARYIY 107 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEA 190 AL E+ T+ I G++ ARVH+V+P+ + + +A+V I+ + P + Sbjct: 108 ALSQEVEATLAQIDGVLVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGMEP--R 165 Query: 191 IRHLVAAAVPNLDMGD 206 IR +VA+++P L D Sbjct: 166 IRRMVASSIPGLSGKD 181 >gi|194350681|gb|ACF53771.1| HrcJ [Erwinia amylovora] Length = 120 Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 6/109 (5%) Query: 97 LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHI 156 L A GLP + + E+F K N T + + AL E+ T+ I G++ ARVH+ Sbjct: 15 LDAAGLPRPARTNLGEVFQK-NGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHV 73 Query: 157 VMPDMGSFRKIGARPTASVMIRA---INPSVYKSAEAIRHLVAAAVPNL 202 V+P+ + + +A+V I+ ++P V + IR +VA+++P L Sbjct: 74 VLPERIAPGEPVQPASAAVFIKYRPDLDPDVIEP--RIRRMVASSLPGL 120 >gi|224534391|ref|ZP_03674969.1| flagellar M-ring protein FliF [Borrelia spielmanii A14S] gi|224514493|gb|EEF84809.1| flagellar M-ring protein FliF [Borrelia spielmanii A14S] Length = 569 Score = 44.3 bits (103), Expect = 0.060, Method: Compositional matrix adjust. Identities = 51/238 (21%), Positives = 108/238 (45%), Gaps = 31/238 (13%) Query: 55 LEVSD---VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGY 111 +E+ D ++RIS L N+ + +S +G + K R L + L + + Sbjct: 56 VEIKDQYLLDRISQRLDRENVKYILSSDGRIYLDDEKLAKKMRAILVREELVPVHMDP-W 114 Query: 112 ELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR------ 165 LFD ++ + +T F + I R++ + + I ++ + A V++VMP+ F+ Sbjct: 115 ALFD-IDRWTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKESQEPV 173 Query: 166 ----KIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---- 217 +I RP + ++ K E + L+ A+ L+ ++ ++D++G +L Sbjct: 174 KASVRITPRPGSDIITNR------KKIEGLVKLIQYAIEGLESDNIAIVDNSGTILNDFS 227 Query: 218 TANEMER-NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELN--MDTQQ 272 + ++R ++ K + + + I+ AL L VD F ++A +N +DT + Sbjct: 228 NLDGIDRIDLAEKERKLKLKYEAMLRGEIDSALGKVLSVDRF---MIARINVKLDTSK 282 >gi|307131216|ref|YP_003883232.1| type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) [Dickeya dadantii 3937] gi|306528745|gb|ADM98675.1| Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) [Dickeya dadantii 3937] Length = 236 Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 79/158 (50%), Gaps = 8/158 (5%) Query: 50 NLYVKLEVSDVNRISVALSEANI--DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 L+ L +D N + AL +I + R G SI + + +A L A GLP + Sbjct: 2 ELHRGLSENDANEVIAALGGYHIGAEKRTEKTGVSILIDVKDMERAVNILNAAGLPRQAR 61 Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + ++F K +++ ++E R + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 62 TNLGQVFQKTGV--ISTPLEERARYIYALSQEVESTLTQIDGVLVARVHVVLPERIAPGE 119 Query: 167 IGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNL 202 +A+V I+ P + + IR +VA+++P L Sbjct: 120 PIQPASAAVFIK-YRPELEPDSIEPRIRRMVASSIPGL 156 >gi|194350711|gb|ACF53786.1| HrcJ [Pectobacterium carotovorum subsp. brasiliensis] Length = 128 Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 71/132 (53%), Gaps = 8/132 (6%) Query: 75 RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR-VR 133 R+ G ++ + + + +A L A GLP S + E+F K S +++ ++E R + Sbjct: 1 RVEKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK--SGVISTPLEERARYIY 58 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEA 190 AL E+ T+ I G++ ARVH+V+P+ + + +A+V I+ + P + + Sbjct: 59 ALSQEVEATLAQIDGVLVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGME--QR 116 Query: 191 IRHLVAAAVPNL 202 IR +VA+++P L Sbjct: 117 IRRMVASSIPGL 128 >gi|149178729|ref|ZP_01857312.1| probable polar flagellar M-ring protein FliF [Planctomyces maris DSM 8797] gi|148842427|gb|EDL56807.1| probable polar flagellar M-ring protein FliF [Planctomyces maris DSM 8797] Length = 538 Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust. Identities = 70/248 (28%), Positives = 104/248 (41%), Gaps = 30/248 (12%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD--- 59 I Q F+ T G R ++L+ +L +ML FF +S + YV L + Sbjct: 7 IYQQFSNLFQ--TMSGSQRAILLSVPLL--MMLAFGFLFFRDS---QSSYVSLSLGKDFT 59 Query: 60 ----VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL-AAQGLPSSSSNSGYELF 114 ++ V L DF S G I VP + V + L GLP+ ++ E F Sbjct: 60 TEEVIHAEEVLLRAGLTDF--SRKGQRIMVPQNEVPRYNAALIEGGGLPTDWASEWQEQF 117 Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARP--T 172 +K + F +Q + R AL ++ R I++I I A V R P T Sbjct: 118 EKSSMFVSKDQLQ-VMRDIALGNQLRRMIRAIPAIEDASVMWAR-SKKRLRWNNTTPEVT 175 Query: 173 ASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLD-STGKLLTANEMERNI 226 A+VM+ R + P + S +R V+ VP+L VTV D STG TA++ Sbjct: 176 ATVMVKPRPGRELTPVLVTS---LRAAVSTMVPDLTTDSVTVFDQSTGTSFTADDKNEAF 232 Query: 227 LGKSLSIV 234 K +S V Sbjct: 233 DSKFISWV 240 >gi|91782699|ref|YP_557905.1| secretory protein YscJ/FliF [Burkholderia xenovorans LB400] gi|91686653|gb|ABE29853.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia xenovorans LB400] Length = 281 Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 28/169 (16%) Query: 50 NLYVKLEVSDVNRISVALSEANIDF---RISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 +L+ L+ NRI ALS I+ R D +I+V + A +A LP Sbjct: 20 SLFEGLDEDQANRIVAALSHHGINGYKERNPDRTWNITVDDADAVVATELASAYALPRGG 79 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPD--- 160 + +LF + GL S +E RVR + G E++ T++ + G++ ARVHIV+P+ Sbjct: 80 HANLGDLFSRQ---GLISSPEE-DRVRYVYGLSQELSETLEKMDGVLLARVHIVLPEKDP 135 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS-------AEAIRHLVAAAVPNL 202 M S + P+ASVM+R Y+S + IR LVA V L Sbjct: 136 MDSTQDT--LPSASVMMR------YRSDYNLEPMRDRIRALVAGGVEGL 176 >gi|194350707|gb|ACF53784.1| HrcJ [Pectobacterium carotovorum subsp. carotovorum] Length = 146 Score = 43.9 bits (102), Expect = 0.071, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 71/132 (53%), Gaps = 8/132 (6%) Query: 75 RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR-VR 133 R+ G ++ + + + +A L A GLP S + E+F K S +++ ++E R + Sbjct: 19 RVDKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK--SGVISTPLEERARYIY 76 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEA 190 AL E+ T+ I G++ ARVH+V+P+ + + +A+V I+ + P + + Sbjct: 77 ALSQEVEATLAQIDGVLVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGME--QR 134 Query: 191 IRHLVAAAVPNL 202 IR +VA+++P L Sbjct: 135 IRRMVASSIPGL 146 >gi|34500890|gb|AAQ73918.1| HrcJ [Pectobacterium carotovorum subsp. carotovorum] Length = 255 Score = 43.9 bits (102), Expect = 0.071, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 72/136 (52%), Gaps = 8/136 (5%) Query: 75 RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR-VR 133 R+ G ++ + + + +A L A GLP S + E+F K S +++ ++E R + Sbjct: 50 RMDKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK--SGVISTPLKERARYIY 107 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEA 190 AL E+ T+ I G++ ARVH+V+P+ + + +A+V I+ + P + + Sbjct: 108 ALSQEVEATLAQIDGVLVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGME--QR 165 Query: 191 IRHLVAAAVPNLDMGD 206 IR +VA+++P L D Sbjct: 166 IRRMVASSIPGLSGKD 181 >gi|296162486|ref|ZP_06845277.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia sp. Ch1-1] gi|295887299|gb|EFG67126.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia sp. Ch1-1] Length = 281 Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 77/167 (46%), Gaps = 24/167 (14%) Query: 50 NLYVKLEVSDVNRISVALSEANIDF---RISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 +L+ L+ NRI ALS I+ R D +I+V A +A LP Sbjct: 20 SLFEGLDEDQANRIVAALSHHGINGYKERNPDRTWNITVDDEDAVIATELASAYALPRGG 79 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMGS 163 + +LF + GL S +E RVR + G E++ T++ + G++ ARVHIV+P+ Sbjct: 80 HANLGDLFSRQ---GLISSPEE-DRVRYVYGLSQELSETLEKMDGVLLARVHIVLPEKDP 135 Query: 164 FRKI-GARPTASVMIRAINPSVYKS-------AEAIRHLVAAAVPNL 202 P+ASVM+R Y+S + IR LVA V L Sbjct: 136 MDPAQDTLPSASVMMR------YRSDYNLEPMRDRIRALVAGGVEGL 176 >gi|160875378|ref|YP_001554694.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Shewanella baltica OS195] gi|160860900|gb|ABX49434.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Shewanella baltica OS195] gi|315267578|gb|ADT94431.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Shewanella baltica OS678] Length = 239 Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 2/91 (2%) Query: 122 LTSFMQEITRVRAL-EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-A 179 +TS QE ++ L E ++ RT+ S+ G+++ARV I P S R+I +ASV I+ + Sbjct: 95 VTSPAQEEAKMGYLKEQQLERTLSSMDGVISARVSIAEPAPDSGRQIALTKSASVYIKYS 154 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 ++ + I+ LV AVP L +++V Sbjct: 155 PQANLTNTENQIKSLVQNAVPGLSYDNISVF 185 >gi|118592619|ref|ZP_01550009.1| Type III secretion component protein SctJ [Stappia aggregata IAM 12614] gi|118434670|gb|EAV41321.1| Type III secretion component protein SctJ [Stappia aggregata IAM 12614] Length = 239 Score = 43.9 bits (102), Expect = 0.074, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 68/135 (50%), Gaps = 2/135 (1%) Query: 77 SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136 D+G S+ V + + A L+ G P + S +F K + + F + + + AL Sbjct: 26 GDDGVSLLVDEADLAPAIGILSENGFPRTERESIGSVFQK-SGIMSSPFEERVRYIHALG 84 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-AINPSVYKSAEAIRHLV 195 E++ T+ I G++ ARVH+V+P+ ++ +A+V I+ + N + IR LV Sbjct: 85 EEVSGTLNEIDGVLMARVHVVLPEKPELGEVIVPSSAAVFIKHSKNVDLDFITPQIRRLV 144 Query: 196 AAAVPNLDMGDVTVL 210 + ++ ++ VTV+ Sbjct: 145 SNSIQGVEYDSVTVV 159 >gi|194350715|gb|ACF53788.1| HrcJ [Pectobacterium atrosepticum SCRI1043] Length = 133 Score = 43.9 bits (102), Expect = 0.076, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 71/132 (53%), Gaps = 8/132 (6%) Query: 75 RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR-VR 133 R+ G ++ + + + +A L A GLP S + E+F K S +++ ++E R + Sbjct: 6 RVDKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK--SGVISTPLEERARYIY 63 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEA 190 AL E+ T+ I G++ ARVH+V+P+ + + +A+V I+ + P + + Sbjct: 64 ALSQEVEATLAQIDGVLVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGME--QR 121 Query: 191 IRHLVAAAVPNL 202 IR +VA+++P L Sbjct: 122 IRRMVASSIPGL 133 >gi|325926453|ref|ZP_08187774.1| flagellar biosynthesis/type III secretory pathway lipoprotein [Xanthomonas perforans 91-118] gi|325543152|gb|EGD14594.1| flagellar biosynthesis/type III secretory pathway lipoprotein [Xanthomonas perforans 91-118] Length = 241 Score = 43.9 bits (102), Expect = 0.077, Method: Compositional matrix adjust. Identities = 49/222 (22%), Positives = 102/222 (45%), Gaps = 16/222 (7%) Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT 396 NYE++ T +++R+S+AV+++ G+ +Q + L I +V A Sbjct: 30 NYELDRTLQHTRQPAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQAV 89 Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL- 455 G ++ RGDT+++ + F+ + +G + + V N L LVG ++V L Sbjct: 90 GFDAARGDTVSVMNAPFVREAV--AGEEGPKWWE-----DPRVQNGLRLLVGAVVVLALL 142 Query: 456 -GL--HALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS 512 G+ LR+L + K + GK+ P S+ V ++ D+ + +D Sbjct: 143 FGVVRPTLRQLTGVTAVKDKQ--GKAGKDGTPQSADVR--MVDEDDDLMPRLEEDTAQIG 198 Query: 513 RNLQSRINSYVSKQSDLRLL-HMIEINEERFAKILRKWARSE 553 ++ ++ I + + +RL ++ + +R A++++ W SE Sbjct: 199 QDKKTPIALPDAYEERMRLAREAVKADSKRVAQVVKGWVASE 240 >gi|194350709|gb|ACF53785.1| HrcJ [Pectobacterium carotovorum subsp. carotovorum] Length = 143 Score = 43.5 bits (101), Expect = 0.083, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 71/132 (53%), Gaps = 8/132 (6%) Query: 75 RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR-VR 133 R+ G ++ + + + +A L A GLP S + E+F K S +++ ++E R + Sbjct: 16 RVDKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK--SGVISTPLEERARYIY 73 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEA 190 AL E+ T+ I G++ ARVH+V+P+ + + +A+V I+ + P + + Sbjct: 74 ALSQEVEATLAQIDGVLVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGME--QR 131 Query: 191 IRHLVAAAVPNL 202 IR +VA+++P L Sbjct: 132 IRRMVASSIPGL 143 >gi|212702675|ref|ZP_03310803.1| hypothetical protein DESPIG_00703 [Desulfovibrio piger ATCC 29098] gi|212673947|gb|EEB34430.1| hypothetical protein DESPIG_00703 [Desulfovibrio piger ATCC 29098] Length = 260 Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 1/78 (1%) Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-AINPSVYKSAEAIR 192 AL E+A T+ I G++ ARVH+V+ I P+A+V +R ++ V IR Sbjct: 104 ALSQELADTLSRIDGVLTARVHVVLGVNDKVNNITIAPSAAVFLRHTLDSPVVNLVPEIR 163 Query: 193 HLVAAAVPNLDMGDVTVL 210 LVA AV +L +V+V+ Sbjct: 164 ELVAGAVASLKYDNVSVM 181 >gi|50121023|ref|YP_050190.1| type III secretion system protein [Pectobacterium atrosepticum SCRI1043] gi|42560409|gb|AAS20369.1| HrcJ [Pectobacterium atrosepticum] gi|49611549|emb|CAG74997.1| type III secretion protein [Pectobacterium atrosepticum SCRI1043] Length = 255 Score = 43.5 bits (101), Expect = 0.092, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 71/136 (52%), Gaps = 8/136 (5%) Query: 75 RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR-VR 133 R+ G ++ + + + +A L A GLP S + E+F K S +++ ++E R + Sbjct: 50 RVEKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK--SGVISTPLEERARYIY 107 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEA 190 AL E+ T+ I G++ ARVH+V+P+ + + +A+V I+ + P + Sbjct: 108 ALSQEVEATLAQIDGVMVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGMEP--R 165 Query: 191 IRHLVAAAVPNLDMGD 206 IR +VA+++P L D Sbjct: 166 IRRMVASSIPGLSGKD 181 >gi|194292006|ref|YP_002007913.1| sctj: non flagellar t3S system conserved transmembrane lipoprotein. yscj/flif family. [Cupriavidus taiwanensis LMG 19424] gi|193225910|emb|CAQ71857.1| SctJ: non flagellar T3S system conserved transmembrane lipoprotein. yscJ/FliF family [Cupriavidus taiwanensis LMG 19424] Length = 262 Score = 43.5 bits (101), Expect = 0.095, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 10/119 (8%) Query: 50 NLYVKLEVSDVNRISVALSEANIDF---RISDNGSS------ISVPSSMVGKARIHLAAQ 100 +LY L + N++ AL+ ID R +G + + V S + A L ++ Sbjct: 29 DLYASLNEPEANQVLAALTAEGIDAEKARADTSGGTGEGQWRVRVEESQLPAALEILRSE 88 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 GLP S ++F K T + + + AL E++ T+++I G+V ARVH+V+P Sbjct: 89 GLPGERFASLGQVFQK-QGLVATPTEERMRYIFALSQELSETLRNIDGVVTARVHVVIP 146 >gi|251789507|ref|YP_003004228.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Dickeya zeae Ech1591] gi|247538128|gb|ACT06749.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Dickeya zeae Ech1591] Length = 261 Score = 43.5 bits (101), Expect = 0.098, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 79/158 (50%), Gaps = 8/158 (5%) Query: 50 NLYVKLEVSDVNRISVALSEANI--DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 L+ L +D N + AL +I + R G SI + + +A L A GLP + Sbjct: 27 ELHRGLSENDANEVIAALGGYHIGAEKRTDKAGVSILIDVKDMERAVNILNAAGLPRQAR 86 Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + ++F K +++ ++E R + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 87 TNLGQVFQKTGV--ISTPLEERARYIYALSQEVESTLTQIDGVLVARVHVVLPERIAPGE 144 Query: 167 IGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNL 202 +A+V I+ P + + IR +VA+++P L Sbjct: 145 PIQPASAAVFIK-YRPELEPDSIEPRIRRMVASSIPGL 181 >gi|296123331|ref|YP_003631109.1| secretory protein YscJ/FliF family protein [Planctomyces limnophilus DSM 3776] gi|296015671|gb|ADG68910.1| secretory protein YscJ/FliF family protein [Planctomyces limnophilus DSM 3776] Length = 532 Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust. Identities = 65/248 (26%), Positives = 116/248 (46%), Gaps = 34/248 (13%) Query: 66 ALSEANI-DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 AL EA + DF+ G + VP++ K R + A + + G +L S L+ Sbjct: 52 ALMEAGLTDFQ--RQGRMLLVPAAE--KDRYNAALLEFDAMPEDLGSQLLKHYES--LSP 105 Query: 125 FMQEITRVRALEG----EIARTIQSISGIVAARVHIVMPDM-GSFRKIGARPTASVMI-- 177 F+ E R E E+A+T+++I + ARV I P+ S+ + G TA+V I Sbjct: 106 FITEKQRHEMREAMLLKEVAQTLKAIPNVEDARVVIANPNRRNSWSQKGTV-TANVTITP 164 Query: 178 ---RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL-SI 233 R ++ + S IR VA+ VP+L DVTV D ++ A + + L L Sbjct: 165 KKGRELSTRLVAS---IRAAVASMVPDLKTSDVTVFDPVNEVTYAGDAADDPLSSQLVQR 221 Query: 234 VQAIQHEIEMNINKALAAFLGV--------DNFRSAVVAELNMDTQQIREIVYDP----D 281 ++ + + E I+K+L+ GV +N +S+V+ +D ++ ++ + D Sbjct: 222 IRELTKQYESQISKSLSYIPGVNVTVHVDIENLKSSVIRTQQIDPKKSAPVISNEFTVND 281 Query: 282 SKVERSIR 289 ++ +R+ R Sbjct: 282 TQTQRAPR 289 >gi|21311402|gb|AAM46696.1|AF448202_7 HrcJ [Erwinia chrysanthemi] Length = 245 Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 79/158 (50%), Gaps = 8/158 (5%) Query: 50 NLYVKLEVSDVNRISVALSEANI--DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 L+ L +D N + AL +I + R G SI + + +A L A GLP + Sbjct: 11 ELHRGLSENDANEVIAALGGYHIGAEKRTDKAGVSILIDVKDMERAVNILNAAGLPRQAR 70 Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + ++F K +++ ++E R + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 71 TNLGQVFQKTGV--ISTPLEERARYIYALSQEVESTLTQIDGVLVARVHVVLPERIAPGE 128 Query: 167 IGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNL 202 +A+V I+ P + + IR +VA+++P L Sbjct: 129 PIQPASAAVFIK-YRPELEPDSIEPRIRRMVASSIPGL 165 >gi|329901481|ref|ZP_08272819.1| Type III secretory pathway, lipoprotein EscJ [Oxalobacteraceae bacterium IMCC9480] gi|327549089|gb|EGF33689.1| Type III secretory pathway, lipoprotein EscJ [Oxalobacteraceae bacterium IMCC9480] Length = 245 Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 75/160 (46%), Gaps = 12/160 (7%) Query: 50 NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 NL L+ +D N I L I+ + + G +++V + V +A + A GLP S Sbjct: 3 NLQTNLQDADANEIVALLRHNGIEAKKVTAKEGITLTVHEADVPRATDIMRAAGLPKRSL 62 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 + +F K T + + + AL E+ T+Q +V+ARVH+V+P+ R Sbjct: 63 ANLGTVFKKEGMIS-TPLEERVRYIHALSEELEFTLQQFDHVVSARVHVVLPE----RIA 117 Query: 168 GARP----TASVMIRAINP-SVYKSAEAIRHLVAAAVPNL 202 P +A+V ++ P + I +LVA+++P L Sbjct: 118 PGEPIQPSSAAVFVKYTEPFDEDTNIPRITNLVASSIPGL 157 >gi|194350701|gb|ACF53781.1| HrcJ [Brenneria nigrifluens] gi|194350703|gb|ACF53782.1| HrcJ [Brenneria nigrifluens] gi|194350705|gb|ACF53783.1| HrcJ [Brenneria alni] Length = 146 Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 70/132 (53%), Gaps = 8/132 (6%) Query: 75 RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR-VR 133 R+ G ++ + + + +A L A GLP S + E+F K S +++ ++E R + Sbjct: 19 RVDKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK--SGVISTPLEERARYIY 76 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEA 190 AL E+ T+ I G++ ARVH+V+P+ + + +A+V I+ + P + Sbjct: 77 ALSQEVEATLAQIDGVLVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGMEP--R 134 Query: 191 IRHLVAAAVPNL 202 IR +VA+++P L Sbjct: 135 IRRMVASSIPGL 146 >gi|119503664|ref|ZP_01625747.1| flagellar M-ring protein [marine gamma proteobacterium HTCC2080] gi|119460726|gb|EAW41818.1| flagellar M-ring protein [marine gamma proteobacterium HTCC2080] Length = 300 Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 87/183 (47%), Gaps = 27/183 (14%) Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD----------A 294 I L LGV R+ V A+L+ + Y P++ + RS + ++D A Sbjct: 5 IESILEPILGVGAARAQVTADLDFTRVESTSEQYSPET-IMRSEQTTEDLTLKSIAAEGA 63 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD-NYK 353 T QP A + V+ P S + T N+E++ K+I+ + K Sbjct: 64 PGQLTEQPPGAADPDDAENAVAQAPSPTRESRKAT------RNFEMD-KTISHVREVPGK 116 Query: 354 LERLSIAVVVNKGRLTEVLG-RSA-DQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 L RLSIAVV++ +T+ G R+A +QG++D EI +V A G + RGDT+++ + Sbjct: 117 LRRLSIAVVIDY--VTDEDGNRTALEQGRLD----EITALVREAVGFDDARGDTVSVINS 170 Query: 412 DFL 414 F+ Sbjct: 171 PFV 173 >gi|194350717|gb|ACF53789.1| HrcJ [Pectobacterium carotovorum subsp. odoriferum] Length = 146 Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 70/132 (53%), Gaps = 8/132 (6%) Query: 75 RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR-VR 133 R+ G ++ + + + +A L A GLP S + E+F K S +++ ++E R + Sbjct: 19 RVEKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK--SGVISTPLEERARYIY 76 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEA 190 AL E+ T+ I G++ ARVH+V+P+ + + +A+V I+ + P + Sbjct: 77 ALSQEVEATLAQIDGVMVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGMEP--R 134 Query: 191 IRHLVAAAVPNL 202 IR +VA+++P L Sbjct: 135 IRRMVASSIPGL 146 >gi|289670545|ref|ZP_06491620.1| flagellar MS-ring protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 230 Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust. Identities = 46/222 (20%), Positives = 102/222 (45%), Gaps = 16/222 (7%) Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT 396 NYE++ T +++R+S+AV+++ G+ +Q + L I +V A Sbjct: 19 NYELDRTLQHTRQPAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQAV 78 Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL- 455 G ++ RGDT+++ + F+ + +G + + V N L LVG ++V L Sbjct: 79 GFDAARGDTVSVMNAPFVREAV--AGEEGPKWWE-----DPRVQNGLRLLVGAVVVLALL 131 Query: 456 -GL--HALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS 512 G+ LR+L + K+ + G + +P + ++ +++ L +D S Sbjct: 132 FGVVRPTLRQLTGVTAIKEKQRKGGNDGTP----QSADVRMVDDEDSLLPHMGEDTASIG 187 Query: 513 RNLQSRINSYVSKQSDLRLL-HMIEINEERFAKILRKWARSE 553 ++ + I + + +R+ ++ + +R A++++ W SE Sbjct: 188 QDRKPAIALPDAYEERMRVAREAVKADSKRVAQVVKGWVASE 229 >gi|323388146|gb|ADX60342.1| inner/outer membrane type III secretion protein RscJ [Pseudomonas fluorescens] Length = 268 Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust. Identities = 43/173 (24%), Positives = 89/173 (51%), Gaps = 14/173 (8%) Query: 50 NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 L+ +L + N + L++ I + + +G + V +S + +A L A GLP + Sbjct: 25 ELHSRLSEQEANEVVAELADKQIRAQKVPAKDGVVVRVNASDISRAVRTLEAAGLPKLAR 84 Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 ++ ++F K +++ ++E R + AL E+ T+ +I G++ ARVH+V+P+ + + Sbjct: 85 STLGDIFRKEGV--ISTPLEERARYIYALSQELEATLSNIDGVIVARVHVVLPERIAPGE 142 Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 +ASV I+ + P + +R +VA+++P G +++T KL Sbjct: 143 PVQPASASVFIKHDPRLEPDNIRP--RVRRMVASSIP----GMAAAVENTQKL 189 >gi|229826302|ref|ZP_04452371.1| hypothetical protein GCWU000182_01674 [Abiotrophia defectiva ATCC 49176] gi|229789172|gb|EEP25286.1| hypothetical protein GCWU000182_01674 [Abiotrophia defectiva ATCC 49176] Length = 536 Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust. Identities = 65/302 (21%), Positives = 130/302 (43%), Gaps = 19/302 (6%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 + L+F+ + + R ++ + + + I+L +FV P L + S+ +I Sbjct: 14 RFLEFWNKYSPVQRILMIAVGVGVFLAIIL---VSYFVTRPVMTTLVKAEKTSETAKIKD 70 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L + I + +S + +ISV A + LA +PS S ELF+ N F T Sbjct: 71 LLDDNGISYELSSDALTISVDQKDYSNALLVLAKNDIPSIGM-SIDELFN--NGFSTTES 127 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTA-SVMIRAINPSV 184 +++ + + + + ++ I A V I P G+ + T+ SV++ + Sbjct: 128 EKKLKANIYKQDWLRQVLLNMDNIENAVVSITSPTTGNTLFAETKDTSVSVILTVSSDFK 187 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEI--- 241 ++A+ I +++A AV N +T+ D +G LL N + ++ ++ + + + Sbjct: 188 QENAKTIANILAGAVGNDSTKAITIADQSGNLL-FNGADNDVFSGGINSISDYEKNVTGV 246 Query: 242 -EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV--YDPDSKVERSIR---LSKDAQ 295 + I K L D+ + V A D +I + Y P + E+ ++ S +AQ Sbjct: 247 KKEEIYKLLVGLPAYDDAK--VAANFIFDMNKISSVYTEYTPPTGAEQGLKSHDYSYEAQ 304 Query: 296 RS 297 S Sbjct: 305 NS 306 >gi|695778|emb|CAA55109.1| lcrKa [Yersinia pestis] Length = 236 Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 4/103 (3%) Query: 78 DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR-ALE 136 D + V S V +A L +G P S ++ ++F K ++S ++E+ R+ A Sbjct: 45 DGKIKLLVEESDVAQAIDILKRKGYPHESFSTLQDVFPKDGL--ISSPIEELARLNYAKA 102 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIR 178 EI+RT+ I G++ ARVH+V+P+ + + K G +ASV I+ Sbjct: 103 QEISRTLSEIDGVLVARVHVVLPEEQNNKGKKGVAASASVFIK 145 >gi|300310135|ref|YP_003774227.1| type III secretion HrcJ lipoprotein [Herbaspirillum seropedicae SmR1] gi|300072920|gb|ADJ62319.1| type III secretion HrcJ lipoprotein [Herbaspirillum seropedicae SmR1] Length = 292 Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust. Identities = 53/190 (27%), Positives = 94/190 (49%), Gaps = 19/190 (10%) Query: 51 LYVKLEVSDVNRISVALSEANI--DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108 L L +D N I + L+ I D + +G ++ V + +A + A GLP S + Sbjct: 29 LQAALNDADANEIILVLNRKGIEVDKQKGKDGVTLLVKDVELSRATETMNAAGLPRRSLS 88 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPD-MGSF 164 + E+F K ++S M+E R+R + G E+ T+ +V+ARVH+V+P+ + Sbjct: 89 NLGEVFKKQGM--ISSPMEE--RIRYIHGLSEELESTMLQFDHVVSARVHVVLPERIAPG 144 Query: 165 RKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGD----VTVLDSTGKLLT 218 I +P+++ + P + + A IR LVA+++P L D V+V+ G+ T Sbjct: 145 EPI--QPSSAAVFVKYRPPLDEDAVMPRIRRLVASSIPGLASEDGRSKVSVVMMPGEPPT 202 Query: 219 ANEMERNILG 228 +E +LG Sbjct: 203 PG-IEWTMLG 211 >gi|312958838|ref|ZP_07773357.1| type III secretion system rscJ [Pseudomonas fluorescens WH6] gi|311286608|gb|EFQ65170.1| type III secretion system rscJ [Pseudomonas fluorescens WH6] Length = 265 Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 71/131 (54%), Gaps = 12/131 (9%) Query: 90 VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISG 148 +G+A L A GLP + + + F K +++ ++E R + AL E+ T+ +I G Sbjct: 67 IGRAVRTLEAVGLPKVARTTLGDTFRKDGV--ISTPLEERARYIYALSQELEATLSNIDG 124 Query: 149 IVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNLDMG 205 ++ ARVH+V+P+ + + +ASV I+ ++P +S +R +VA+++P + Sbjct: 125 VIVARVHVVLPERIAPGEPVQPASASVFIKHDPRLDPDNIRS--RVRRMVASSIPGMS-- 180 Query: 206 DVTVLDSTGKL 216 T +D+ KL Sbjct: 181 --TTVDNPQKL 189 >gi|16082747|ref|NP_395193.1| needle complex inner membrane lipoprotein [Yersinia pestis CO92] gi|31795324|ref|NP_857723.1| needle complex inner membrane lipoprotein [Yersinia pestis KIM] gi|31795467|ref|NP_857918.1| needle complex inner membrane lipoprotein [Yersinia pestis KIM] gi|45478525|ref|NP_995352.1| putative type III secretion lipoprotein YscJ [Yersinia pestis biovar Microtus str. 91001] gi|51593928|ref|YP_068495.1| yscJ, ylpB; putative type III secretion lipoprotein [Yersinia pseudotuberculosis IP 32953] gi|108793648|ref|YP_636797.1| type III secretion lipoprotein [Yersinia pestis Antiqua] gi|145597125|ref|YP_001154589.1| type III secretion lipoprotein [Yersinia pestis Pestoides F] gi|149192680|ref|YP_001293912.1| putative type III secretion lipoprotein [Yersinia pestis CA88-4125] gi|162417757|ref|YP_001604492.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis Angola] gi|165927768|ref|ZP_02223600.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Orientalis str. F1991016] gi|165940079|ref|ZP_02228613.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Orientalis str. IP275] gi|166011735|ref|ZP_02232633.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Antiqua str. E1979001] gi|166214472|ref|ZP_02240507.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Antiqua str. B42003004] gi|167401937|ref|ZP_02307423.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422389|ref|ZP_02314142.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167422456|ref|ZP_02314209.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167422890|ref|ZP_02314643.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426845|ref|ZP_02318598.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186897504|ref|YP_001874615.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Yersinia pseudotuberculosis PB1/+] gi|229896875|ref|ZP_04512035.1| putative type III secretion lipoprotein [Yersinia pestis Pestoides A] gi|229900230|ref|ZP_04515366.1| putative type III secretion lipoprotein [Yersinia pestis biovar Orientalis str. India 195] gi|270491089|ref|ZP_06208161.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Yersinia pestis KIM D27] gi|294496851|ref|YP_003560548.1| needle complex inner membrane lipoprotein [Yersinia pestis Z176003] gi|322836586|ref|YP_004210082.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis Java 9] gi|57015226|sp|P69972|YSCJ_YERPE RecName: Full=Yop proteins translocation lipoprotein J; AltName: Full=Lipoprotein ylpB; AltName: Full=Low calcium response locus protein KA; Flags: Precursor gi|57015227|sp|P69973|YSCJ_YERPS RecName: Full=Yop proteins translocation lipoprotein J; AltName: Full=Lipoprotein ylpB; AltName: Full=Low calcium response locus protein KA; Flags: Precursor gi|155466|gb|AAA27651.1| lcrKa [Yersinia pseudotuberculosis] gi|2996284|gb|AAC62607.1| Yop proteins translocation lipoprotein J [Yersinia pestis KIM 10] gi|3822055|gb|AAC69775.1| type III secretion protein [Yersinia pestis KIM 10] gi|5832479|emb|CAB54936.1| putative type III secretion lipoprotein [Yersinia pestis CO92] gi|45357147|gb|AAS58543.1| putative type III secretion lipoprotein YscJ [Yersinia pestis biovar Microtus str. 91001] gi|51591625|emb|CAF25429.1| yscJ, ylpB; putative type III secretion lipoprotein [Yersinia pseudotuberculosis IP 32953] gi|108782195|gb|ABG16250.1| type III secretion lipoprotein [Yersinia pestis Antiqua] gi|145212893|gb|ABP42299.1| type III secretion lipoprotein [Yersinia pestis Pestoides F] gi|148872338|gb|ABR14828.1| putative type III secretion lipoprotein [Yersinia pestis CA88-4125] gi|162354777|gb|ABX88724.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis Angola] gi|165911989|gb|EDR30632.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Orientalis str. IP275] gi|165920204|gb|EDR37505.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Orientalis str. F1991016] gi|165989342|gb|EDR41643.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Antiqua str. E1979001] gi|166204365|gb|EDR48845.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Antiqua str. B42003004] gi|166958180|gb|EDR55201.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Orientalis str. MG05-1020] gi|166958626|gb|EDR55647.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Orientalis str. MG05-1020] gi|166958693|gb|EDR55714.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048665|gb|EDR60073.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054144|gb|EDR63971.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186700530|gb|ACC91158.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Yersinia pseudotuberculosis PB1/+] gi|229686750|gb|EEO78830.1| putative type III secretion lipoprotein [Yersinia pestis biovar Orientalis str. India 195] gi|229700146|gb|EEO88185.1| putative type III secretion lipoprotein [Yersinia pestis Pestoides A] gi|262363863|gb|ACY60583.1| needle complex inner membrane lipoprotein [Yersinia pestis D106004] gi|262364019|gb|ACY64356.1| needle complex inner membrane lipoprotein [Yersinia pestis D182038] gi|270334832|gb|EFA45611.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Yersinia pestis KIM D27] gi|294352439|gb|ADE66496.1| needle complex inner membrane lipoprotein [Yersinia pestis Z176003] gi|317374463|gb|ADV16638.1| type III secretion bridge between inner and outermembrane lipoprotein [Yersinia pestis] gi|320017494|gb|ADW01065.1| putative type III secretion lipoprotein [Yersinia pestis biovar Medievalis str. Harbin 35] gi|321161360|gb|ADW67066.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis Java 9] Length = 244 Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 4/103 (3%) Query: 78 DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR-ALE 136 D + V S V +A L +G P S ++ ++F K ++S ++E+ R+ A Sbjct: 53 DGKIKLLVEESDVAQAIDILKRKGYPHESFSTLQDVFPKDGL--ISSPIEELARLNYAKA 110 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIR 178 EI+RT+ I G++ ARVH+V+P+ + + K G +ASV I+ Sbjct: 111 QEISRTLSEIDGVLVARVHVVLPEEQNNKGKKGVAASASVFIK 153 >gi|238924170|ref|YP_002937686.1| flagellar biosynthesis/type III secretory pathway lipoprotein [Eubacterium rectale ATCC 33656] gi|238875845|gb|ACR75552.1| flagellar biosynthesis/type III secretory pathway lipoprotein [Eubacterium rectale ATCC 33656] gi|291524899|emb|CBK90486.1| flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) [Eubacterium rectale DSM 17629] gi|291529040|emb|CBK94626.1| flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) [Eubacterium rectale M104/1] Length = 533 Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust. Identities = 83/385 (21%), Positives = 164/385 (42%), Gaps = 37/385 (9%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 AILD++ ++K + R+ +L S++ V I+ + ++ P L S+ + Sbjct: 7 AILDKITAWWKKFNTKQRS---VLISIVAVVIVALVILGVVISRPTQVELVEAQSASEAS 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN--S 119 I L + NI + + D+ V S A + L G+P+ + + D V S Sbjct: 64 TIKGVLEDNNISYEV-DSKLVFFVNKSDEVNAIMALGDNGIPAQAYS-----IDNVTDGS 117 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM-GSFRKIGARPTASVMIR 178 F T ++ LE ++ ++ S + A V I MPD G+ K TA+V + Sbjct: 118 FSTTEADKQKKYQVYLEDKLKDHLEKQSYVNEASVDITMPDKDGTILKSKEEATAAVTLG 177 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA---NEMERNILGKSLSIVQ 235 + A AI LVA A+ N +T++D +L + ++ + LS Q Sbjct: 178 LKDSITDDQAYAIARLVATALGNDTTKGITIIDKKANVLYSGGDSDTSAGLATSQLSYKQ 237 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-----TQQIREIVYDPDSKVERSIRL 290 ++ +++ + K L + N S + +N+D T+ ++ PD + + + Sbjct: 238 KLEEQVKNEVKKTLES----SNIFSNIEVGMNLDIDFSKTETAQKNYTLPDGQTDTGLLD 293 Query: 291 SKDAQRSETSQPESAV----TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346 S+ +S+ + ++AV + + + + P S+ + DKK +N + I Sbjct: 294 SESNYQSDATNGQAAVPGTDSNSDDTTYTTQDGTPSESSITDNDKK------YLNDEKIT 347 Query: 347 TTHDN---YKLERLSIAVVVNKGRL 368 T+ ++ K + SI VV + ++ Sbjct: 348 TSKNDGGSIKYDSSSITVVATRYKV 372 >gi|310923250|emb|CBW54716.1| YscJ, lipoprotein, signal peptidase II cleavage site LFLTG-CKVDL, length difference in automated annotation (should start at 35114 gtg/V, point mutation here from M to V), PMID 18227263 [Yersinia enterocolitica (type O:8)] gi|318608181|emb|CBY78155.1| type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) [Yersinia enterocolitica subsp. palearctica Y11] Length = 210 Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 4/103 (3%) Query: 78 DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR-ALE 136 D + V S V +A L +G P S ++ ++F K ++S ++E+ R+ A Sbjct: 19 DGKIKLLVEESDVAQAIDILKRKGYPHESFSTLQDVFPKDGL--ISSPIEELARLNYAKA 76 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIR 178 EI+RT+ I G++ ARVH+V+P+ + + K G +ASV I+ Sbjct: 77 QEISRTLSEIDGVLVARVHVVLPEEQNNKGKKGVAASASVFIK 119 >gi|194350687|gb|ACF53774.1| HrcJ [Erwinia rhapontici] Length = 144 Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 70/132 (53%), Gaps = 8/132 (6%) Query: 75 RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR-VR 133 R+ G ++ + + + +A L A GLP S + E+F K S +++ ++E R + Sbjct: 17 RVEKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK--SGVISTPLEERARYIY 74 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEA 190 AL E+ T+ I G++ ARVH+V+P+ + + +A+V I+ + P + Sbjct: 75 ALSQEVEATLAQIDGVMVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGMEP--R 132 Query: 191 IRHLVAAAVPNL 202 IR +VA+++P L Sbjct: 133 IRRMVASSIPGL 144 >gi|10955579|ref|NP_052420.1| hypothetical protein pYVe227_p43 [Yersinia enterocolitica] gi|28373017|ref|NP_783695.1| hypothetical protein pYVa12790_p42 [Yersinia enterocolitica] gi|32470307|ref|NP_863542.1| hypothetical protein pYVe8081_p37 [Yersinia enterocolitica] gi|122815831|ref|YP_001004097.1| type III secretion lipoprotein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332163601|ref|YP_004424943.1| type III secretion lipoprotein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|267571|sp|Q01251|YSCJ_YEREN RecName: Full=Yop proteins translocation lipoprotein J; AltName: Full=Lipoprotein ylpB; Flags: Precursor gi|14579365|gb|AAK69242.1|AF336309_37 YscJ [Yersinia enterocolitica] gi|155559|gb|AAC37027.1| yscJ [Yersinia enterocolitica] gi|4324366|gb|AAD16843.1| YscJ [Yersinia enterocolitica W22703] gi|28302112|gb|AAN37545.2| YscJ [Yersinia enterocolitica] gi|121663705|emb|CAL10067.1| type III secretion lipoprotein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|325667831|gb|ADZ44474.1| type III secretion lipoprotein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 244 Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 4/103 (3%) Query: 78 DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR-ALE 136 D + V S V +A L +G P S ++ ++F K ++S ++E+ R+ A Sbjct: 53 DGKIKLLVEESDVAQAIDILKRKGYPHESFSTLQDVFPKDGL--ISSPIEELARLNYAKA 110 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIR 178 EI+RT+ I G++ ARVH+V+P+ + + K G +ASV I+ Sbjct: 111 QEISRTLSEIDGVLVARVHVVLPEEQNNKGKKGVAASASVFIK 153 >gi|282891204|ref|ZP_06299707.1| type III secretion lipoprotein SctJ [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498897|gb|EFB41213.1| type III secretion lipoprotein SctJ [Parachlamydia acanthamoebae str. Hall's coccus] Length = 321 Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust. Identities = 62/208 (29%), Positives = 91/208 (43%), Gaps = 26/208 (12%) Query: 24 ILASVILVPIMLFMAARFFVNSPHYDNLYVK-LEVSDVNRISVALSEANID-FRI----- 76 IL+ ++ +L MA F + S V L+ + N I V LS ID ++ Sbjct: 6 ILSKLVGTVFLLCMA--FLLTSCESRKTIVNGLDEKEANEIVVFLSSKGIDAMKVQSTEG 63 Query: 77 SDNGSS------ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT-SFMQEI 129 + G S ISV + +A L GLP S +F V GL S +QE Sbjct: 64 AGGGGSKIVLWDISVSADKATQAMSILNQSGLPRRKPQSLLGIFSNV---GLVPSELQER 120 Query: 130 TRVRA-LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARP---TASVMIR---AINP 182 R +A L +IA TI+ I G++ A V I P+ G + ASV ++ ++ Sbjct: 121 IRYQAGLAEQIASTIRKIDGVLDAEVQISFPEEDPLNPTGEKKGKIVASVYVKHSGVLDD 180 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 I+ LVAA+V LD +VTV+ Sbjct: 181 PNSHLVTKIKRLVAASVTGLDYDNVTVI 208 >gi|83645997|ref|YP_434432.1| type III secretory pathway, lipoprotein EscJ [Hahella chejuensis KCTC 2396] gi|83634040|gb|ABC30007.1| Type III secretory pathway, lipoprotein EscJ [Hahella chejuensis KCTC 2396] Length = 265 Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 3/98 (3%) Query: 82 SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR-VRALEGEIA 140 ++SV + + +A L ++G P S ELF K ++S ++E R + L EIA Sbjct: 68 ALSVERAQLSQAIRLLKSRGYPRDDFTSVGELFKKDGL--ISSPLEERARYIYGLSQEIA 125 Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178 T+ + G++ ARVH+VMP++ + + +ASV I+ Sbjct: 126 ATLSQLDGVITARVHVVMPEVENKKAPLKVSSASVFIK 163 >gi|126174186|ref|YP_001050335.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Shewanella baltica OS155] gi|125997391|gb|ABN61466.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Shewanella baltica OS155] Length = 239 Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 2/91 (2%) Query: 122 LTSFMQEITRVRAL-EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-A 179 +TS QE ++ L E ++ RT+ S+ G+++ARV I P + R++ +ASV I+ + Sbjct: 95 VTSPAQEEAKMGYLKEQQLERTLSSMDGVISARVSIAEPAPDTGRQLAQTKSASVYIKYS 154 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 ++ + I+ LV AVP L +++V Sbjct: 155 PQANLTNTENQIKSLVQNAVPGLSYDNISVF 185 >gi|271500435|ref|YP_003333460.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Dickeya dadantii Ech586] gi|270343990|gb|ACZ76755.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Dickeya dadantii Ech586] Length = 268 Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 79/158 (50%), Gaps = 8/158 (5%) Query: 50 NLYVKLEVSDVNRISVALSEANI--DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 L+ L +D N + AL +I + R G SI + + ++ L A GLP + Sbjct: 27 ELHRGLSENDANEVIAALGGYHIGAEKRTDKAGVSILIDVKDMERSVNILNAAGLPRQAR 86 Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + ++F K +++ ++E R + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 87 TNLGQVFQKTGV--ISTPLEERARYIYALSQEVESTLTQIDGVLVARVHVVLPERIAPGE 144 Query: 167 IGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNL 202 +A+V I+ P + + IR +VA+++P L Sbjct: 145 PIQPASAAVFIK-YRPELEPDSIEPRIRRMVASSIPGL 181 >gi|194350713|gb|ACF53787.1| HrcJ [Pectobacterium carotovorum subsp. brasiliensis] Length = 120 Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust. Identities = 34/110 (30%), Positives = 61/110 (55%), Gaps = 8/110 (7%) Query: 97 LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVH 155 L A GLP S + E+F K S +++ ++E R + AL E+ T+ I G++ ARVH Sbjct: 15 LNAAGLPKQSRTNLGEVFQK--SGVISTPLEERARYIYALSQEVEATLAQIDGVLVARVH 72 Query: 156 IVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202 +V+P+ + + +A+V I+ + P + + IR +VA+++P L Sbjct: 73 VVLPERIAPGEPVHPASAAVFIKYRAELEPDGME--QRIRRMVASSIPGL 120 >gi|62185504|ref|YP_220289.1| putative type III export protein [Chlamydophila abortus S26/3] gi|62148571|emb|CAH64343.1| putative type III export protein [Chlamydophila abortus S26/3] Length = 330 Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust. Identities = 52/139 (37%), Positives = 72/139 (51%), Gaps = 23/139 (16%) Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT-SFMQEITRVRALEG---E 138 ISVP++ + +A L GLP S +LF K GL S MQE ++R EG + Sbjct: 72 ISVPAAQITEALAILNQAGLPRMKGTSLLDLFAKQ---GLVPSEMQE--KIRYQEGLSEQ 126 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGAR--P-TASVMI--RAI--NPSVYKSAEAI 191 +A TI+ + GIV A V I SF P TASV I R + NP+ ++ I Sbjct: 127 MASTIRKMDGIVDASVQI------SFTTEAEDNLPLTASVYIKHRGVLDNPNSIMVSK-I 179 Query: 192 RHLVAAAVPNLDMGDVTVL 210 + LVA+AVP L +V+V+ Sbjct: 180 KRLVASAVPGLSTENVSVI 198 >gi|254228230|ref|ZP_04921659.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio sp. Ex25] gi|262394115|ref|YP_003285969.1| type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ PscJ) [Vibrio sp. Ex25] gi|151939303|gb|EDN58132.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio sp. Ex25] gi|262337709|gb|ACY51504.1| type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ PscJ) [Vibrio sp. Ex25] Length = 247 Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 12/158 (7%) Query: 78 DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR-VRALE 136 DN + V SS + A L +G P ++ E+F K + ++S + E R V A Sbjct: 53 DNTVKLMVDSSQIAFAVDALKRKGYPREQFSTLKEVFPKDDL--ISSPLAERARLVYAKS 110 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPT---ASVMIR-AINPSVYKSAEAIR 192 E++ T+ I G++ ARVH+V+ D + G RPT ASV I+ A + ++ I+ Sbjct: 111 QELSSTLSQIDGVLVARVHVVLEDQD--LRPGERPTPASASVFIKHAADIALDSYVPQIK 168 Query: 193 HLVAAAVPNLDMGDVTVL---DSTGKLLTANEMERNIL 227 LV ++ L+ ++V+ S ++ T N ++IL Sbjct: 169 LLVNNSIEGLNYDRISVVMVPSSEVRIATQNNQFKSIL 206 >gi|73532528|dbj|BAE19822.1| flagellar M-ring protein [Edwardsiella tarda] Length = 125 Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 4/83 (4%) Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINK 390 +++E +NYE++ T +ERLS+AVVVN T + Q K+D +IN Sbjct: 38 RRDETTNYEVDRTIRHTQARAGNIERLSVAVVVNYATDTNGKEIALSQEKMD----QINN 93 Query: 391 IVSAATGINSRRGDTITITSMDF 413 +V A G + RGDT+++ + F Sbjct: 94 LVREAMGFSQSRGDTLSVVNTPF 116 >gi|194350689|gb|ACF53775.1| HrcJ [Erwinia rhapontici] Length = 146 Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 70/132 (53%), Gaps = 8/132 (6%) Query: 75 RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR-VR 133 R+ G ++ + + + +A L A GLP S + E+F + S +++ ++E R + Sbjct: 19 RVEKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQR--SGVISTPLEERARYIY 76 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEA 190 AL E+ T+ I G++ ARVH+V+P+ + + +A+V I+ + P + Sbjct: 77 ALSQEVEATLAQIDGVMVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGMEP--R 134 Query: 191 IRHLVAAAVPNL 202 IR +VA+++P L Sbjct: 135 IRRMVASSIPGL 146 >gi|269967253|ref|ZP_06181317.1| putative type III secretion lipoprotein [Vibrio alginolyticus 40B] gi|269828109|gb|EEZ82379.1| putative type III secretion lipoprotein [Vibrio alginolyticus 40B] Length = 237 Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 12/158 (7%) Query: 78 DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR-VRALE 136 DN + V SS + A L +G P ++ E+F K + ++S + E R V A Sbjct: 43 DNTVKLMVDSSQIAFAVDALKRKGYPREQFSTLKEVFPKDDL--ISSPLAERARLVYAKS 100 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPT---ASVMIR-AINPSVYKSAEAIR 192 E++ T+ I G++ ARVH+V+ D + G RPT ASV I+ A + ++ I+ Sbjct: 101 QELSSTLSQIDGVLVARVHVVLEDQD--LRPGERPTPASASVFIKHAADIALDSYVPQIK 158 Query: 193 HLVAAAVPNLDMGDVTVL---DSTGKLLTANEMERNIL 227 LV ++ L+ ++V+ S ++ T N ++IL Sbjct: 159 LLVNNSIEGLNYDRISVVMVPSSEVRVATQNNQFKSIL 196 >gi|91224456|ref|ZP_01259718.1| putative type III secretion lipoprotein [Vibrio alginolyticus 12G01] gi|91190798|gb|EAS77065.1| putative type III secretion lipoprotein [Vibrio alginolyticus 12G01] gi|262284512|gb|ACY41049.1| VscJ [Vibrio alginolyticus] Length = 247 Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 12/158 (7%) Query: 78 DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR-VRALE 136 DN + V SS + A L +G P ++ E+F K + ++S + E R V A Sbjct: 53 DNTVKLMVDSSQIAFAVDALKRKGYPREQFSTLKEVFPKDDL--ISSPLAERARLVYAKS 110 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPT---ASVMIR-AINPSVYKSAEAIR 192 E++ T+ I G++ ARVH+V+ D + G RPT ASV I+ A + ++ I+ Sbjct: 111 QELSSTLSQIDGVLVARVHVVLEDQD--LRPGERPTPASASVFIKHAADIALDSYVPQIK 168 Query: 193 HLVAAAVPNLDMGDVTVL---DSTGKLLTANEMERNIL 227 LV ++ L+ ++V+ S ++ T N ++IL Sbjct: 169 LLVNNSIEGLNYDRISVVMVPSSEVRVATQNNQFKSIL 206 >gi|15835462|ref|NP_297221.1| type III secretion protein SctJ [Chlamydia muridarum Nigg] gi|270285642|ref|ZP_06195036.1| type III secretion protein SctJ [Chlamydia muridarum Nigg] gi|270289651|ref|ZP_06195953.1| type III secretion protein SctJ [Chlamydia muridarum Weiss] gi|301337038|ref|ZP_07225240.1| type III secretion protein SctJ [Chlamydia muridarum MopnTet14] gi|7190875|gb|AAF39646.1| type III secretion protein SctJ [Chlamydia muridarum Nigg] Length = 328 Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust. Identities = 50/137 (36%), Positives = 71/137 (51%), Gaps = 20/137 (14%) Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT-SFMQEITRVRALEG---E 138 ISVP++ + +A L GLP S +LF K GL S MQE ++R EG + Sbjct: 72 ISVPAAQITEALAILNQAGLPRMKGTSLLDLFAKQ---GLVPSEMQE--KIRYQEGLSEQ 126 Query: 139 IARTIQSISGIVAARVHIVM-PDMGSFRKIGARPTASVMI--RAI--NPSVYKSAEAIRH 193 +A TI+ + GIV A V I P+ TASV I R + NP+ ++ I+ Sbjct: 127 MATTIRKMDGIVDASVQISFSPEEDQLPL-----TASVYIKHRGVLDNPNSIMVSK-IKR 180 Query: 194 LVAAAVPNLDMGDVTVL 210 LVA+AVP L +V+V+ Sbjct: 181 LVASAVPGLCPENVSVV 197 >gi|153836290|ref|ZP_01988957.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio parahaemolyticus AQ3810] gi|149750565|gb|EDM61310.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio parahaemolyticus AQ3810] Length = 248 Score = 41.2 bits (95), Expect = 0.51, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 78/155 (50%), Gaps = 11/155 (7%) Query: 63 ISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +S+ LSE + + DN + V SS + A L +G P ++ E+F K + Sbjct: 37 LSILLSEGVVATKEPDKDNKVKLMVDSSQIAFAVDALKRKGYPREQFSTLKEVFPKDDL- 95 Query: 121 GLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPT---ASVM 176 ++S + E R V A E++ T+ I G++ ARVH+V+ D + G RPT ASV Sbjct: 96 -ISSPLAERARLVYAKSQELSSTLSQIDGVLVARVHVVLEDQD--LRPGERPTPASASVF 152 Query: 177 IR-AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 I+ A + ++ I+ LV ++ L+ ++V+ Sbjct: 153 IKHAADVALDSYVPQIKLLVNNSIEGLNYDRISVV 187 >gi|328468926|gb|EGF39886.1| putative type III secretion lipoprotein [Vibrio parahaemolyticus 10329] Length = 248 Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 78/155 (50%), Gaps = 11/155 (7%) Query: 63 ISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +S+ LSE + + DN + V SS + A L +G P ++ E+F K + Sbjct: 37 LSILLSEGVVATKEPDKDNKVKLMVDSSQIAFAVDALKRKGYPREQFSTLKEVFPKDDL- 95 Query: 121 GLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPT---ASVM 176 ++S + E R V A E++ T+ I G++ ARVH+V+ D + G RPT ASV Sbjct: 96 -ISSPLAERARLVYAKSQELSSTLSQIDGVLVARVHVVLEDQD--LRPGERPTPASASVF 152 Query: 177 IR-AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 I+ A + ++ I+ LV ++ L+ ++V+ Sbjct: 153 IKHAADVALDSYVPQIKLLVNNSIEGLNYDRISVV 187 >gi|89897886|ref|YP_514996.1| type III secretion flagellar biosynthesis M-ring protein [Chlamydophila felis Fe/C-56] gi|89331258|dbj|BAE80851.1| type III secretion flagellar biosynthesis M-ring protein [Chlamydophila felis Fe/C-56] Length = 330 Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust. Identities = 51/139 (36%), Positives = 72/139 (51%), Gaps = 23/139 (16%) Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT-SFMQEITRVRALEG---E 138 I+VP++ + +A L GLP S +LF K GL S MQE ++R EG + Sbjct: 72 IAVPAAQITEALAILNQAGLPRMKGTSLLDLFAKQ---GLVPSEMQE--KIRYQEGLSEQ 126 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGAR--P-TASVMI--RAI--NPSVYKSAEAI 191 +A TI+ + GIV A V I SF P TASV I R + NP+ ++ I Sbjct: 127 MASTIRKMDGIVDASVQI------SFTTEAEENLPLTASVYIKHRGVLDNPNSIMVSK-I 179 Query: 192 RHLVAAAVPNLDMGDVTVL 210 + LVA+AVP L +V+V+ Sbjct: 180 KRLVASAVPGLSTENVSVI 198 >gi|28898464|ref|NP_798069.1| putative type III secretion lipoprotein [Vibrio parahaemolyticus RIMD 2210633] gi|260365094|ref|ZP_05777665.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio parahaemolyticus K5030] gi|260879510|ref|ZP_05891865.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio parahaemolyticus AN-5034] gi|260895015|ref|ZP_05903511.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio parahaemolyticus Peru-466] gi|28806682|dbj|BAC59953.1| putative type III secretion lipoprotein [Vibrio parahaemolyticus RIMD 2210633] gi|308085933|gb|EFO35628.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio parahaemolyticus Peru-466] gi|308093438|gb|EFO43133.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio parahaemolyticus AN-5034] gi|308111628|gb|EFO49168.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio parahaemolyticus K5030] Length = 248 Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 78/155 (50%), Gaps = 11/155 (7%) Query: 63 ISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +S+ LSE + + DN + V SS + A L +G P ++ E+F K + Sbjct: 37 LSILLSEGVVATKEPDKDNKVKLMVDSSQIAFAVDALKRKGYPREQFSTLKEVFPKDDL- 95 Query: 121 GLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPT---ASVM 176 ++S + E R V A E++ T+ I G++ ARVH+V+ D + G RPT ASV Sbjct: 96 -ISSPLAERARLVYAKSQELSSTLSQIDGVLVARVHVVLEDQD--LRPGERPTPASASVF 152 Query: 177 IR-AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 I+ A + ++ I+ LV ++ L+ ++V+ Sbjct: 153 IKHAADVALDSYVPQIKLLVNNSIEGLNYDRISVV 187 >gi|253988512|ref|YP_003039868.1| type III secretion component protein sctj [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211637906|emb|CAR66535.1| type iii secretion component protein sctj [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779962|emb|CAQ83123.1| type iii secretion component protein sctj [Photorhabdus asymbiotica] Length = 245 Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 6/115 (5%) Query: 50 NLYVKLEVSDVNRISVALSEANI--DFRISDNGS-SISVPSSMVGKARIHLAAQGLPSSS 106 LY + + N + L EA I D + +G+ + V S V +A L ++G P + Sbjct: 22 ELYTGVSQKEGNEMLALLREAGISSDKQPDKDGNIKLLVEESDVAQAVEVLKSKGYPREN 81 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVR-ALEGEIARTIQSISGIVAARVHIVMPD 160 +S ++F K ++S ++E R+ A EIART+ I G++ ARVH+V+P+ Sbjct: 82 FSSLQDVFPKDGL--ISSPVEERARLNFAKAQEIARTLSEIDGVLVARVHVVLPE 134 >gi|325917018|ref|ZP_08179257.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Xanthomonas vesicatoria ATCC 35937] gi|325536769|gb|EGD08526.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Xanthomonas vesicatoria ATCC 35937] Length = 254 Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 11/117 (9%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR--ISDNGSS--ISVPSSMVGKARIHLAAQGLPSSS 106 LY L +D N + L A +D D+G + I+ P + V + L A G+P Sbjct: 23 LYSGLTENDANDMLAVLLTAGVDAEKVTPDDGKTWAINAPHAQVAYSLEVLRAHGMPHER 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPD 160 + E+F K GL S E RVR + G ++++T+ +I G++AA V IV+P+ Sbjct: 83 HANLGEMFKKD---GLISTPTE-ERVRFIYGVSQQLSQTLSNIDGVIAADVEIVLPN 135 >gi|256004783|ref|ZP_05429758.1| flagellar M-ring protein FliF [Clostridium thermocellum DSM 2360] gi|281417197|ref|ZP_06248217.1| flagellar M-ring protein FliF [Clostridium thermocellum JW20] gi|255991233|gb|EEU01340.1| flagellar M-ring protein FliF [Clostridium thermocellum DSM 2360] gi|281408599|gb|EFB38857.1| flagellar M-ring protein FliF [Clostridium thermocellum JW20] gi|316940778|gb|ADU74812.1| flagellar M-ring protein FliF [Clostridium thermocellum DSM 1313] Length = 517 Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust. Identities = 63/250 (25%), Positives = 109/250 (43%), Gaps = 24/250 (9%) Query: 6 QLLQFFKSGTSLGRTRILILASVILV--PIMLFMAARFFVNSPHYDNLYVKL-EVSDVNR 62 Q+ F+K+ +TRIL+ + +++V I + M R YV L V D + Sbjct: 11 QVTDFWKNLDKSQKTRILVTSGILVVVLTIAIVMLTR---------TTYVPLITVEDPDS 61 Query: 63 ISV---ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL--PSSSSNSGYELFDKV 117 IS AL E NI ++ + G I V S +A LA+ GL P + + L Sbjct: 62 ISAIEEALKERNIKYKHGE-GRRILVDSKDKNEAEFALASAGLTEPGMTFEDAWSLLKVS 120 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMGSFRKIGARPTASVM 176 +S + + + +L IA+ ++ + A + + +P D F + A+V Sbjct: 121 SSESDKKQLWQNFKKNSL---IAK-LKMFDNVKDADIELTIPEDTMFFTDSKSEAKAAVR 176 Query: 177 IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIVQ 235 I + E I +VA+++ LD +VTV+D+ +L + + NI + Sbjct: 177 ITPKGELTPEQVEGIVMVVASSIEGLDPKNVTVVDNNFNILNQDLSDGMNIPSSHYKLKL 236 Query: 236 AIQHEIEMNI 245 I+ E+E NI Sbjct: 237 RIKEELEKNI 246 >gi|329943273|ref|ZP_08292047.1| hypothetical protein G5Q_0963 [Chlamydophila psittaci Cal10] gi|332287851|ref|YP_004422752.1| putative type III secretion system protein [Chlamydophila psittaci 6BC] gi|313848423|emb|CBY17427.1| putative type III export protein [Chlamydophila psittaci RD1] gi|325506893|gb|ADZ18531.1| putative type III secretion system protein [Chlamydophila psittaci 6BC] gi|328814820|gb|EGF84810.1| hypothetical protein G5Q_0963 [Chlamydophila psittaci Cal10] gi|328915113|gb|AEB55946.1| type III secretion protein SctJ [Chlamydophila psittaci 6BC] Length = 330 Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust. Identities = 52/139 (37%), Positives = 71/139 (51%), Gaps = 23/139 (16%) Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT-SFMQEITRVRALEG---E 138 ISVP+ + +A L GLP S +LF K GL S MQE ++R EG + Sbjct: 72 ISVPAEQITEALAILNQAGLPRMKGTSLLDLFAKQ---GLVPSEMQE--KIRYQEGLSEQ 126 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGAR--P-TASVMI--RAI--NPSVYKSAEAI 191 +A TI+ + GIV A V I SF P TASV I R + NP+ ++ I Sbjct: 127 MASTIRKMDGIVDASVQI------SFTTEAEDNLPLTASVYIKHRGVLDNPNSIMVSK-I 179 Query: 192 RHLVAAAVPNLDMGDVTVL 210 + LVA+AVP L +V+V+ Sbjct: 180 KRLVASAVPGLSTENVSVI 198 >gi|166714023|ref|ZP_02245230.1| HrpB3 [Xanthomonas oryzae pv. oryzicola BLS256] gi|61219462|gb|AAX40639.1| HrpB3 [Xanthomonas oryzae pv. oryzicola] Length = 254 Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 11/117 (9%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106 LY L +D N + L A +D D+G + +V PS V + L A GLP Sbjct: 23 LYSGLTENDANAMLEVLLHAGVDASKVTPDDGKTWAVNAPSDQVSYSLETLRAHGLPHER 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPD 160 + E+F K GL S E RVR + G ++++T+ +I G+++A V IV+P+ Sbjct: 83 HANLGEMFKK---DGLISTPTE-ERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPN 135 >gi|125972986|ref|YP_001036896.1| flagellar M-ring protein FliF [Clostridium thermocellum ATCC 27405] gi|125713211|gb|ABN51703.1| flagellar M-ring protein FliF [Clostridium thermocellum ATCC 27405] Length = 517 Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust. Identities = 63/250 (25%), Positives = 109/250 (43%), Gaps = 24/250 (9%) Query: 6 QLLQFFKSGTSLGRTRILILASVILV--PIMLFMAARFFVNSPHYDNLYVKL-EVSDVNR 62 Q+ F+K+ +TRIL+ + +++V I + M R YV L V D + Sbjct: 11 QVTDFWKNLDKSQKTRILVTSGILVVVLTIAIVMLTR---------TTYVPLITVQDPDS 61 Query: 63 ISV---ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL--PSSSSNSGYELFDKV 117 IS AL E NI ++ + G I V S +A LA+ GL P + + L Sbjct: 62 ISAIEEALKERNIKYKHGE-GRRILVDSKDKNEAEFALASAGLTEPGMTFEDAWSLLKVS 120 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMGSFRKIGARPTASVM 176 +S + + + +L IA+ ++ + A + + +P D F + A+V Sbjct: 121 SSESDKKQLWQNFKKNSL---IAK-LKMFDNVKDADIELTIPEDTMFFTDSKSEAKAAVR 176 Query: 177 IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIVQ 235 I + E I +VA+++ LD +VTV+D+ +L + + NI + Sbjct: 177 ITPKGELTPEQVEGIVMVVASSIEGLDPKNVTVVDNNFNILNQDLSDGMNIPSSHYKLKL 236 Query: 236 AIQHEIEMNI 245 I+ E+E NI Sbjct: 237 RIKEELEKNI 246 >gi|330443944|ref|YP_004376930.1| type III secretion protein SctJ [Chlamydophila pecorum E58] gi|328807054|gb|AEB41227.1| type III secretion protein SctJ [Chlamydophila pecorum E58] Length = 330 Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust. Identities = 48/136 (35%), Positives = 69/136 (50%), Gaps = 18/136 (13%) Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT-SFMQEITRVRALEG---E 138 ISVPS+ + +A L GLP S +LF K GL S +QE ++R EG + Sbjct: 72 ISVPSAQITEALAILNQAGLPRMKGTSLLDLFAKQ---GLVPSELQE--KIRYQEGLSEQ 126 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI--RAI--NPSVYKSAEAIRHL 194 +A TI+ + GIV A V I + TASV + R + NP+ A I+ L Sbjct: 127 MASTIRKMDGIVDASVQISFSTEEDVVPL----TASVYVKHRGVLDNPNSIM-ASKIKRL 181 Query: 195 VAAAVPNLDMGDVTVL 210 +A+AVP L +V+V+ Sbjct: 182 IASAVPGLTPENVSVV 197 >gi|266623336|ref|ZP_06116271.1| flagellar M-ring protein FliF [Clostridium hathewayi DSM 13479] gi|288864874|gb|EFC97172.1| flagellar M-ring protein FliF [Clostridium hathewayi DSM 13479] Length = 539 Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 69/137 (50%), Gaps = 8/137 (5%) Query: 81 SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140 ++VP + VG + ++ G P ++ +++F F T F + + L+ I Sbjct: 87 GEVTVPENQVGDIMLDMSELGYPKTALP--FDIFSDNMGFTTTEFEKRQYLLLNLQDRIE 144 Query: 141 RTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195 RT++ ++GI A V + + D ++ GA T +V + + P S E AI++L+ Sbjct: 145 RTLKDMNGIKNAIVTLNVSDDSNYVWDDQGADSTGAVSL-TLMPDCELSPEKVGAIKNLI 203 Query: 196 AAAVPNLDMGDVTVLDS 212 A +VP L +VTV+++ Sbjct: 204 ANSVPRLLPENVTVVNA 220 >gi|84785890|gb|ABC62084.1| secretion and cellular translocation protein J [Chlamydophila psittaci] Length = 330 Score = 40.8 bits (94), Expect = 0.62, Method: Compositional matrix adjust. Identities = 52/139 (37%), Positives = 71/139 (51%), Gaps = 23/139 (16%) Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT-SFMQEITRVRALEG---E 138 ISVP+ + +A L GLP S +LF K GL S MQE ++R EG + Sbjct: 72 ISVPAEQITEALAILNQAGLPRMKGTSLLDLFAKQ---GLVPSEMQE--KIRYQEGLSEQ 126 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGAR--P-TASVMI--RAI--NPSVYKSAEAI 191 +A TI+ + GIV A V I SF P TASV I R + NP+ ++ I Sbjct: 127 MASTIRKMDGIVDASVQI------SFTTEAEDNLPLTASVYIKHRGVLDNPNSIMVSK-I 179 Query: 192 RHLVAAAVPNLDMGDVTVL 210 + LVA+AVP L +V+V+ Sbjct: 180 KRLVASAVPGLSTENVSVI 198 >gi|303240288|ref|ZP_07326807.1| flagellar M-ring protein FliF [Acetivibrio cellulolyticus CD2] gi|302592198|gb|EFL61927.1| flagellar M-ring protein FliF [Acetivibrio cellulolyticus CD2] Length = 524 Score = 40.8 bits (94), Expect = 0.69, Method: Compositional matrix adjust. Identities = 53/254 (20%), Positives = 112/254 (44%), Gaps = 31/254 (12%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIM--LFMAARFFVNSPHYDNLYVKL----EVSD 59 ++ + +K+ + RI ++++++++ I + M R YV L + D Sbjct: 11 RITELWKNLDKSQKGRIYVISAILVIAITVSIVMLTR---------TTYVPLVTIDDTKD 61 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I L + I+++ + G+ I V S KA LA+ G SS G D N Sbjct: 62 AAEIEKVLQDKGINYKPGE-GNKILVDSKEKNKAEFALASSGFTSS----GMNFEDAWNL 116 Query: 120 FGLTSFMQEITRVRA--LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 +TS + ++ + + ++ + A + + MP F + A+ + Sbjct: 117 VSITSTESDKKQLWENFKKNSLVAKLKMFDNVRDADIEVTMPKDSLFFDDTSSDKATAFV 176 Query: 178 RAINPSVYKSAEAIRHLVA---AAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIV 234 R I+P ++E ++ +V+ A++ LD DVTV+D+ +L+ + + +G + + Sbjct: 177 R-IDPKGEITSEQVKGIVSVVSASIDGLDPKDVTVVDNNFNILSTD--ASDAIGDTSTQY 233 Query: 235 Q---AIQHEIEMNI 245 + ++ E+E NI Sbjct: 234 KMKLKVKQELEKNI 247 >gi|37527647|ref|NP_930991.1| Type III secretion component protein SctJ [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787082|emb|CAE16157.1| Type III secretion component protein SctJ [Photorhabdus luminescens subsp. laumondii TTO1] Length = 245 Score = 40.4 bits (93), Expect = 0.79, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 6/115 (5%) Query: 50 NLYVKLEVSDVNRISVALSEANI--DFRISDNGS-SISVPSSMVGKARIHLAAQGLPSSS 106 LY + + N + L EA I D + +G+ + V S V +A L +G P + Sbjct: 22 ELYTDVSQKEGNEMLALLREAGISSDKQPDKDGNIKLLVEESDVAQAVEVLKRKGYPREN 81 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVR-ALEGEIARTIQSISGIVAARVHIVMPD 160 +S ++F K ++S ++E R+ A EIART+ I G++ ARVH+V+P+ Sbjct: 82 FSSLQDVFPKDGL--ISSPIEERARLNFAKAQEIARTLSEIDGVLVARVHVVLPE 134 >gi|119953090|ref|YP_945299.1| flagellar MS-ring protein [Borrelia turicatae 91E135] gi|119861861|gb|AAX17629.1| flagellar M-ring protein FliF [Borrelia turicatae 91E135] Length = 568 Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust. Identities = 48/220 (21%), Positives = 101/220 (45%), Gaps = 12/220 (5%) Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 ++RI L ++++ I+ +G +M K R L + L + + LFD ++ Sbjct: 64 LDRIVQRLDRESVEYIITADGKIYLSDENMSKKMRAILVREELVPVHMDP-WSLFD-IDR 121 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 + +T F + + R++ + + I ++ + A +++VMP+ F++ ASV I Sbjct: 122 WTITDFERNVNLRRSITRAVEQHIVALDDVDAVSINLVMPEKALFKESQEAVKASVRITP 181 Query: 180 INPSVY----KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL----TANEMER-NILGKS 230 S K E + L+ A+ L+ ++ ++D+ G +L + ++R ++ K Sbjct: 182 KPGSDIVTNRKKVEGLVKLIQYAIEGLESDNIAIVDNKGTVLNDFSNLDGIDRIDLAEKE 241 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDT 270 + + + I+ AL+ L VD F A V + +DT Sbjct: 242 RKLKLKYESMLRDEIDSALSKVLSVDRFMIARV-NVTLDT 280 >gi|325921922|ref|ZP_08183733.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Xanthomonas gardneri ATCC 19865] gi|325547624|gb|EGD18667.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Xanthomonas gardneri ATCC 19865] Length = 254 Score = 40.4 bits (93), Expect = 0.84, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 11/117 (9%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106 LY L +D N + L A +D D+G + +V P V A L G+P Sbjct: 23 LYSGLTENDANDMLAVLLTAGVDAEKLTPDDGKTWAVNAPHDQVAYALNVLRTHGMPHER 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPD 160 + E+F K GL S E RVR + G ++++T+ +I G++AA V IV+P+ Sbjct: 83 HANLGEMFKK---DGLISTPTE-ERVRFIYGVSQQLSQTLSNIDGVIAADVQIVLPN 135 >gi|188992467|ref|YP_001904477.1| HrcJ protein [Xanthomonas campestris pv. campestris str. B100] gi|167734227|emb|CAP52435.1| HrcJ protein [Xanthomonas campestris pv. campestris] Length = 254 Score = 40.4 bits (93), Expect = 0.84, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 11/117 (9%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106 LY L +D N + L A +D D+G + +V P V A L G+P Sbjct: 23 LYSGLTENDANDMLAVLLTAGVDAEKLTPDDGKTWAVNAPHDQVAYALNVLRTHGMPHER 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPD 160 + E+F K GL S E RVR + G ++++T+ +I G++AA V IV+P+ Sbjct: 83 HANLGEMFKKD---GLISTPTE-ERVRFIYGVSQQLSQTLSNIDGVIAADVQIVLPN 135 >gi|27550044|gb|AAO18027.1| LscJ [Photorhabdus luminescens] Length = 245 Score = 40.4 bits (93), Expect = 0.87, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 6/115 (5%) Query: 50 NLYVKLEVSDVNRISVALSEANI--DFRISDNGS-SISVPSSMVGKARIHLAAQGLPSSS 106 LY + + N + L EA I D + +G+ + V S V +A L +G P + Sbjct: 22 ELYTGVSQKEGNEMLALLREAGISSDKQPDKDGNIKLLVEESDVAQAVEVLKRKGYPREN 81 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVR-ALEGEIARTIQSISGIVAARVHIVMPD 160 +S ++F K ++S ++E R+ A EIART+ I G++ ARVH+V+P+ Sbjct: 82 FSSLQDVFPKDGL--ISSPIEERARLNFAKAQEIARTLSEIDGVLVARVHVVLPE 134 >gi|21230690|ref|NP_636607.1| HrcJ protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769315|ref|YP_244077.1| HrcJ protein [Xanthomonas campestris pv. campestris str. 8004] gi|21112279|gb|AAM40531.1| HrcJ protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574647|gb|AAY50057.1| HrcJ protein [Xanthomonas campestris pv. campestris str. 8004] Length = 254 Score = 40.4 bits (93), Expect = 0.89, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 11/117 (9%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106 LY L +D N + L A +D D+G + +V P V A L G+P Sbjct: 23 LYSGLTENDANDMLAVLLTAGVDAEKLTPDDGKTWAVNAPHDQVAYALNVLRTHGMPHER 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPD 160 + E+F K GL S E RVR + G ++++T+ +I G++AA V IV+P+ Sbjct: 83 HANLGEMFKKD---GLISTPTE-ERVRFIYGVSQQLSQTLSNIDGVIAADVQIVLPN 135 >gi|29840690|ref|NP_829796.1| type III secretion protein SctJ [Chlamydophila caviae GPIC] gi|29835040|gb|AAP05674.1| type III secretion protein SctJ [Chlamydophila caviae GPIC] Length = 330 Score = 40.4 bits (93), Expect = 0.90, Method: Compositional matrix adjust. Identities = 52/139 (37%), Positives = 71/139 (51%), Gaps = 23/139 (16%) Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT-SFMQEITRVRALEG---E 138 ISVP+ + +A L GLP S +LF K GL S MQE ++R EG + Sbjct: 72 ISVPAPQITEALAILNQAGLPRMKGTSLLDLFAKQ---GLVPSEMQE--KIRYQEGLSEQ 126 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGAR--P-TASVMI--RAI--NPSVYKSAEAI 191 +A TI+ + GIV A V I SF P TASV I R + NP+ ++ I Sbjct: 127 MASTIRKMDGIVDASVQI------SFTTDAEDNLPLTASVYIKHRGVLDNPNSIMVSK-I 179 Query: 192 RHLVAAAVPNLDMGDVTVL 210 + LVA+AVP L +V+V+ Sbjct: 180 KRLVASAVPGLSTENVSVI 198 >gi|257457887|ref|ZP_05623046.1| flagellar M-ring protein FliF [Treponema vincentii ATCC 35580] gi|257444600|gb|EEV19684.1| flagellar M-ring protein FliF [Treponema vincentii ATCC 35580] Length = 567 Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust. Identities = 57/230 (24%), Positives = 107/230 (46%), Gaps = 14/230 (6%) Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGK-ARIHLAAQGLPSSSSNSGYELFDKVNSF 120 RI + L+E N+ +S +G ISV + R L + L +++ + LFD V + Sbjct: 66 RIVLRLNEENVKATVSQSGI-ISVNDEQTARRMRAILLREDLIPQNTDP-WALFD-VERW 122 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 T F + I RA+ E+ + I+++ + A V + +P+ F+ TASV++ Sbjct: 123 TRTDFERNIDVRRAVIEEVRKHIKALDDVDDASVVVNLPEDKLFQADQNPVTASVILYPK 182 Query: 181 NPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMER-NILGKSL 231 S K E I+ L+ AV L ++T+ D++G +L + +R +I+ K Sbjct: 183 PGSDISTNRKKIEGIQKLLKYAVEGLTDDNITIADNSGNILNDFAGLKDFDRLSIIEKQQ 242 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRS-AVVAELNMDTQQIREIVYDP 280 I+ ++ + E+ I L G D R ++ +++M + + Y P Sbjct: 243 KIIAKLETQYEIKILNILQKTYGTDRVRDLSIKIDMDMSEKTAETVEYLP 292 >gi|15639390|ref|NP_218839.1| flagellar MS-ring protein [Treponema pallidum subsp. pallidum str. Nichols] gi|189025632|ref|YP_001933404.1| flagellar MS-ring protein [Treponema pallidum subsp. pallidum SS14] gi|6016022|sp|O83414|FLIF_TREPA RecName: Full=Flagellar M-ring protein gi|3322682|gb|AAC65387.1| flagellar basal-body M ring protein (fliF) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018207|gb|ACD70825.1| flagellar basal-body M ring protein [Treponema pallidum subsp. pallidum SS14] gi|291059789|gb|ADD72524.1| flagellar M-ring protein FliF [Treponema pallidum subsp. pallidum str. Chicago] Length = 567 Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust. Identities = 92/382 (24%), Positives = 155/382 (40%), Gaps = 52/382 (13%) Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170 + +FD V + T F + + RA+ + I+++ I A V I +P+ F+ Sbjct: 114 WAIFD-VERWTRTDFERRVDVRRAINNTVTNHIKALDDIDDAHVVINVPEDALFQADQKP 172 Query: 171 PTASVMI----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN- 225 TASV+I + S K E I+ L+ AVP L ++T++DS +L E ++ Sbjct: 173 ITASVVIFPKPSSTIASERKKIEGIQKLLKLAVPGLKDENITIVDSDATVLNDFEGFKDA 232 Query: 226 ----ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRS---AVVAELNMDTQQIR---- 274 ++ K ++ ++ + E + L G D R + +L+ T Q Sbjct: 233 DRLSLIEKQQKMIAKLESQYEAKVLALLQKTYGKDRVRDLNIKIEMDLSEKTSQTTKYLP 292 Query: 275 -EIVYD-PDSKVERSIRLSKDAQRSETS---------QPESAVTVE-QNMPHVSDRKVPL 322 EI D PD+ + S + SET+ PE VE Q P D + Sbjct: 293 IEIRQDNPDTPWDDSQVVPSVTSISETATTTWQGTGLNPEGPPGVEGQTPPAYKDMSNQV 352 Query: 323 PRSLENTDKKEEQ-SNYEIN----------TKSIATTHDNYKLERLSIAVVVNKGRLT-E 370 S ++ KK+E S EIN T S+ + K +V +G + E Sbjct: 353 GLSNQSVVKKQEAISKSEINEVVSPVLGRRTVSVNIDGEWRKKRDEHGRFIVKEGHIERE 412 Query: 371 VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT-----VQ 425 + SA++ L E K V A G ++ R D++++ ++ F F+ VQ Sbjct: 413 YIPISAEE------LREATKAVQDAIGFDAGRKDSVSVLNIKFDRTSEFDREDEHYLRVQ 466 Query: 426 VSFMDILSRHFATVINALVFLV 447 M IL + I +F+V Sbjct: 467 QRNMIILYSLASVAIVLFIFMV 488 >gi|289663765|ref|ZP_06485346.1| HrcJ protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 254 Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 11/117 (9%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106 LY L +D N + L A +D D+G + +V P V + L A G+P Sbjct: 23 LYSGLTENDANDMLAVLLRAGVDASKVTPDDGKTWAVNAPRDQVAYSLDVLRAHGMPHER 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPD 160 + E+F K GL S E RVR + G ++++T+ +I G++AA V IV+P+ Sbjct: 83 HANLGEMFKK---DGLISTPTE-ERVRFIYGVSQQLSQTLSNIDGVIAADVEIVLPN 135 >gi|169771395|ref|XP_001820167.1| G-patch domain protein (TFIP11) [Aspergillus oryzae RIB40] gi|83768026|dbj|BAE58165.1| unnamed protein product [Aspergillus oryzae] Length = 769 Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 10/119 (8%) Query: 165 RKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNL--DMGDVT-----VLDSTGKLL 217 RK G+R + P + E + VPN+ + D T VL ST L+ Sbjct: 168 RKQGSRSGTGTPVPRAKPQFRTAREMEEDMAGLEVPNVLKSLVDATGKEQRVLTSTAGLM 227 Query: 218 TANEMERNILGKSLSIVQAIQHEIEMNIN--KALAAFLGVDNFRSAVVAELNMDTQQIR 274 T +E + G++L I Q +H++E + K LA + A + E MDTQQ+R Sbjct: 228 TPSEFVKPGEGEALKIAQRARHDLEAFADEWKGLAERKKFIDLEEAQLVE-QMDTQQLR 285 >gi|120586845|ref|YP_961190.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Desulfovibrio vulgaris subsp. vulgaris DP4] gi|120564259|gb|ABM30002.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Desulfovibrio vulgaris DP4] Length = 271 Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 66/138 (47%), Gaps = 12/138 (8%) Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG--LTSFMQEITRVR-AL 135 NG ++SV V +A L LP Y+ KV S + S +E R+ A+ Sbjct: 65 NGYTLSVERRQVVQALEVLRENSLPREQ----YQSLGKVFSGDGMIASPSEEKARLSYAI 120 Query: 136 EGEIARTIQSISGIVAARVHIVMP--DMGSFRKIGARPTASVMIRAINPS-VYKSAEAIR 192 E+A T I G++ AR H+V+ D+G+ + A +A+V +R S V IR Sbjct: 121 SQELADTFSRIDGVLTARAHVVLASSDVGTDTRTPA--SAAVFLRHTEDSPVVNLIPKIR 178 Query: 193 HLVAAAVPNLDMGDVTVL 210 + A AVP LD V+V+ Sbjct: 179 EMTAKAVPGLDYEKVSVM 196 >gi|325522916|gb|EGD01366.1| type III secretion protein SctJ [Burkholderia sp. TJI49] Length = 263 Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust. Identities = 60/173 (34%), Positives = 82/173 (47%), Gaps = 18/173 (10%) Query: 51 LYVKLEVSDVNRISVALSEANI------DFR-ISD-NGSSISVPSSMVGKARIHLAAQGL 102 LY L D N++ L +A I D R SD N +SV + A L A GL Sbjct: 36 LYSGLSERDANQMVAVLGDAGISASKDNDARDTSDRNAWQVSVADGDMQSALTVLQANGL 95 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMP 159 P S S ELF K GL S E RVR L G +++RT+Q I G+V ARV +V+P Sbjct: 96 PKPSYASLGELFQKQ---GLVSTPAE-ERVRYLYGVSQDLSRTLQDIEGVVVARVQVVIP 151 Query: 160 DMGSFRKIGARPTASVMIRAINPSVYKSAEA--IRHLVAAAVPNLDMGDVTVL 210 + +A+V IR P V A A ++ LVA ++ L +V++ Sbjct: 152 ENDPLADKIKPSSAAVYIR-YRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSLF 203 >gi|289668187|ref|ZP_06489262.1| HrcJ protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 246 Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 11/117 (9%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106 LY L +D N + L A +D D+G + +V P V + L A G+P Sbjct: 15 LYSGLTENDANDMLAVLLRAGVDASKVTPDDGKTWAVNAPRDQVAYSLDVLRAHGMPHER 74 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPD 160 + E+F K GL S E RVR + G ++++T+ +I G++AA V IV+P+ Sbjct: 75 HANLGEMFKKD---GLISTPTE-ERVRFIYGVSQQLSQTLSNIDGVIAADVEIVLPN 127 >gi|222082184|ref|YP_002541549.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Agrobacterium radiobacter K84] gi|221726863|gb|ACM29952.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Agrobacterium radiobacter K84] Length = 274 Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Query: 97 LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHI 156 L+ GLP + ELF + F +T Q+ A+E ++ T+ ++ G+ +ARVHI Sbjct: 90 LSDAGLPRLPHRTMAELFPG-DGFLVTPLEQKARMTYAVEQQLGETLSALDGVASARVHI 148 Query: 157 VMPD 160 V+P+ Sbjct: 149 VLPE 152 >gi|46562142|ref|YP_009157.1| type III secretion lipoprotein [Desulfovibrio vulgaris str. Hildenborough] gi|46447679|gb|AAS94345.1| type III secretion lipoprotein [Desulfovibrio vulgaris str. Hildenborough] gi|311235505|gb|ADP88358.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Desulfovibrio vulgaris RCH1] Length = 271 Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 66/138 (47%), Gaps = 12/138 (8%) Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG--LTSFMQEITRVR-AL 135 NG ++SV V +A L LP Y+ KV S + S +E R+ A+ Sbjct: 65 NGYTLSVERRQVVQALEVLRENSLPREQ----YQSLGKVFSGDGMIASPSEEKARLSYAI 120 Query: 136 EGEIARTIQSISGIVAARVHIVMP--DMGSFRKIGARPTASVMIRAINPS-VYKSAEAIR 192 E+A T I G++ AR H+V+ D+G+ + A +A+V +R S V IR Sbjct: 121 SQELADTFSRIDGVLTARAHVVLASSDVGTDTRTPA--SAAVFLRHTEDSPVVNLIPKIR 178 Query: 193 HLVAAAVPNLDMGDVTVL 210 + A AVP LD V+V+ Sbjct: 179 EMTAKAVPGLDYEKVSVM 196 >gi|304408569|ref|ZP_07390190.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Shewanella baltica OS183] gi|307305397|ref|ZP_07585145.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Shewanella baltica BA175] gi|304352390|gb|EFM16787.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Shewanella baltica OS183] gi|306911700|gb|EFN42125.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Shewanella baltica BA175] Length = 239 Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 2/91 (2%) Query: 122 LTSFMQEITRVRAL-EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-A 179 +TS QE ++ L E ++ RT+ S+ G+++A V I P + R++ +ASV I+ + Sbjct: 95 VTSPAQEEAKMGYLKEQQLERTLSSMDGVISASVSIAEPAPDTGRQLAQTKSASVYIKYS 154 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 ++ + I+ LV AVP L +++V Sbjct: 155 PQANLTNTENQIKSLVQNAVPGLSYDNISVF 185 >gi|317486819|ref|ZP_07945635.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Bilophila wadsworthia 3_1_6] gi|316921982|gb|EFV43252.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Bilophila wadsworthia 3_1_6] Length = 269 Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS-VYKSAEAIR 192 A+ E++ T I G++ ARVH+V+ P+A+V +R S V IR Sbjct: 119 AISQELSDTFSRIDGVLTARVHVVLGGTDQATDTRTLPSAAVFLRHTPDSPVVNLVAKIR 178 Query: 193 HLVAAAVPNLDMGDVTVL 210 L + AVP+LD V+V+ Sbjct: 179 ELTSKAVPDLDYERVSVM 196 >gi|254250200|ref|ZP_04943520.1| Secretory protein YscJ/FliF [Burkholderia cenocepacia PC184] gi|124876701|gb|EAY66691.1| Secretory protein YscJ/FliF [Burkholderia cenocepacia PC184] Length = 238 Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust. Identities = 60/173 (34%), Positives = 82/173 (47%), Gaps = 18/173 (10%) Query: 51 LYVKLEVSDVNRISVALSEANI------DFR-ISD-NGSSISVPSSMVGKARIHLAAQGL 102 LY L D N++ L +A I D R SD N +SV + A L A GL Sbjct: 36 LYSGLSERDANQMVAVLGDAGISASKDNDARDTSDRNAWLVSVADGDMQAALTVLQANGL 95 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMP 159 P S S ELF K GL S E RVR L G +++RT+Q I G+V ARV +V+P Sbjct: 96 PKPSYASLGELFQKQ---GLVSTPAE-ERVRYLYGVSQDLSRTLQDIEGVVVARVQVVIP 151 Query: 160 DMGSFRKIGARPTASVMIRAINPSVYKSAEA--IRHLVAAAVPNLDMGDVTVL 210 + +A+V IR P V A A ++ LVA ++ L +V++ Sbjct: 152 ENDPLADKIKPSSAAVYIR-YRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSLF 203 >gi|82940561|emb|CAJ44290.1| putative flagellar M-ring protein FliF [Rhizobium leguminosarum bv. viciae] Length = 78 Score = 39.3 bits (90), Expect = 1.7, Method: Composition-based stats. Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Query: 504 SNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 S +D+ S + N V + + +L M+EINEER AKILRKWA Sbjct: 28 STEDLLSLGDD-DGNFNRRVKEGPERKLSRMVEINEERAAKILRKWA 73 >gi|17549088|ref|NP_522428.1| Hrp conserved lipoprotein HRCJ transmembrane [Ralstonia solanacearum GMI1000] gi|6066708|emb|CAB58254.1| HrpI protein [Ralstonia solanacearum] gi|17431339|emb|CAD18018.1| hrp conserved lipoprotein hrcj transmembrane [Ralstonia solanacearum GMI1000] gi|1097287|prf||2113360N hrpI gene Length = 269 Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 14/169 (8%) Query: 50 NLYVKLEVSDVNRISVALSEANIDFRIS--DNGSSISV--PSSMVGKARIHLAAQGLPSS 105 L+ +L +D N + L +A ID + + D+G + SV ++ L A GLP Sbjct: 30 QLFAQLTEADANDMLTVLLQAGIDAQKTSPDDGKTWSVLVDDDAFARSMEVLHAHGLPRE 89 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMG 162 + ++F K GL S E RVR + G ++++T+ I G+ A V IV+P+ Sbjct: 90 KYANLGDIFKK---DGLISTPTE-ERVRFIYGVSQQLSQTLSRIDGVAVASVQIVLPNND 145 Query: 163 SFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTV 209 + +ASV I+ P+ +A +I++LV +V L +V V Sbjct: 146 PLASVVKPSSASVFIK-YRPTANVTALLPSIKNLVVHSVEGLTYENVAV 193 >gi|238764898|ref|ZP_04625838.1| Flagellar M-ring protein [Yersinia kristensenii ATCC 33638] gi|238696917|gb|EEP89694.1| Flagellar M-ring protein [Yersinia kristensenii ATCC 33638] Length = 572 Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 4/83 (4%) Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINK 390 + ++ +N+E++ T ++RLS+AVVVN G T+ G+ K LA++ Sbjct: 371 RHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVNYG--TDKAGKPIALSK--EQLAQVES 426 Query: 391 IVSAATGINSRRGDTITITSMDF 413 + A G ++ RGDT+ + + F Sbjct: 427 LTREAMGFSTDRGDTLNVVNTPF 449 >gi|153832501|ref|ZP_01985168.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio harveyi HY01] gi|156973996|ref|YP_001444903.1| hypothetical protein VIBHAR_01707 [Vibrio harveyi ATCC BAA-1116] gi|148871296|gb|EDL70168.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio harveyi HY01] gi|156525590|gb|ABU70676.1| hypothetical protein VIBHAR_01707 [Vibrio harveyi ATCC BAA-1116] Length = 252 Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 80/158 (50%), Gaps = 17/158 (10%) Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA-----QGLPSSSSNSGYELFDKV 117 +S+ LSE + + D +++ + MV A+I A +G P ++ E+F K Sbjct: 41 LSILLSEGVVATKEPDKDNTVKL---MVDNAQIAFAVDALKRKGYPREQFSTLKEVFPKD 97 Query: 118 NSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPT---A 173 + ++S + E R + A E++ T+ I G++ ARVH+V+ D + G RPT A Sbjct: 98 DL--ISSPLAERARLIYAKSQELSSTLSQIDGVLVARVHVVLEDQN--LRPGERPTPASA 153 Query: 174 SVMIR-AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 SV I+ A + ++ I+ LV ++ L+ ++V+ Sbjct: 154 SVFIKHAADVALDSYVPQIKLLVNNSIEGLNYDRISVV 191 >gi|218680631|ref|ZP_03528528.1| flagellar MS-ring protein [Rhizobium etli CIAT 894] Length = 98 Score = 39.3 bits (90), Expect = 1.8, Method: Composition-based stats. Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Query: 504 SNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 S +D+ S + N V + + +L M+EINEER AKILRKWA Sbjct: 48 STEDLLSLGDD-DGNFNRRVKEGPERKLSRMVEINEERAAKILRKWA 93 >gi|325526929|gb|EGD04393.1| flagellar MS-ring protein [Burkholderia sp. TJI49] Length = 185 Score = 39.3 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 34/59 (57%) Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 +RLS+AVVVN + + G Q + LA+I ++V A G + +RGD++ + + F Sbjct: 1 KRLSVAVVVNSQPVADAKGHVTMQPLPPAKLAQIEQLVKDAMGYDEKRGDSVNVVNSAF 59 >gi|188574352|ref|YP_001911281.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Xanthomonas oryzae pv. oryzae PXO99A] gi|188518804|gb|ACD56749.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Xanthomonas oryzae pv. oryzae PXO99A] Length = 246 Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 11/117 (9%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106 LY L +D N + L A +D D+G + +V P V + L A GLP Sbjct: 15 LYSGLTENDANDMLEVLLHAGVDASKVTPDDGKTWAVNAPHDQVSYSLEALRAHGLPHER 74 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPD 160 + E+F K GL S E RVR + G ++++T+ +I G+++A V IV+P+ Sbjct: 75 HANLGEMFKK---DGLISTPTE-ERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPN 127 >gi|269963158|ref|ZP_06177493.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832122|gb|EEZ86246.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 247 Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 16/125 (12%) Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA-----QGLPSSSSNSGYELFDKV 117 +S+ LSE + + D +++ + MV A+I A +G P ++ E+F K Sbjct: 36 LSILLSEGVVATKEPDKDNTVKL---MVDNAQIAFAVDALKRKGYPREQFSTLKEVFPKD 92 Query: 118 NSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPT---A 173 + ++S + E R + A E++ T+ I G++ ARVH+V+ D + G RPT A Sbjct: 93 DL--ISSPLAERARLIYAKSQELSSTLSQIDGVLVARVHVVLEDQN--LRPGERPTPASA 148 Query: 174 SVMIR 178 SV I+ Sbjct: 149 SVFIK 153 >gi|58579711|ref|YP_198727.1| HrpB3 [Xanthomonas oryzae pv. oryzae KACC10331] gi|84621745|ref|YP_449117.1| HrcJ protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|7350916|gb|AAF61284.1| HrpB3 [Xanthomonas oryzae pv. oryzae] gi|9711586|dbj|BAB07855.1| HrpB3 [Xanthomonas oryzae pv. oryzae] gi|24251290|gb|AAN46409.1| HrpB3 [Xanthomonas oryzae pv. oryzae] gi|50428349|dbj|BAD29986.1| HrcJ [Xanthomonas oryzae pv. oryzae] gi|58424305|gb|AAW73342.1| HrpB3 [Xanthomonas oryzae pv. oryzae KACC10331] gi|84365685|dbj|BAE66843.1| HrcJ protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 253 Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 11/117 (9%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106 LY L +D N + L A +D D+G + +V P V + L A GLP Sbjct: 22 LYSGLTENDANDMLEVLLHAGVDASKVTPDDGKTWAVNAPHDQVSYSLEALRAHGLPHER 81 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPD 160 + E+F K GL S E RVR + G ++++T+ +I G+++A V IV+P+ Sbjct: 82 HANLGEMFKK---DGLISTPTE-ERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPN 134 >gi|219566957|dbj|BAH04988.1| Hrp conserved lipoprotein transmembrane protein [Ralstonia solanacearum] Length = 269 Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 81/169 (47%), Gaps = 14/169 (8%) Query: 50 NLYVKLEVSDVNRISVALSEANIDFRIS--DNGSSISVPSSMVGKARIH--LAAQGLPSS 105 L+ +L +D N + L +A ID + + D+G + SV AR L A GLP Sbjct: 30 QLFAQLTEADANDMLTVLLQAGIDAQKTSPDDGKTWSVLVDDDAFARSMEVLHAHGLPRE 89 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMG 162 + ++F K GL S E RVR + G ++++T+ I G+ A V IV+P+ Sbjct: 90 KYANLGDIFKK---DGLISTPTE-ERVRFIYGVSQQLSQTLSRIDGVAVASVQIVLPNND 145 Query: 163 SFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTV 209 + +ASV I+ P+ +A +I++LV +V L +V V Sbjct: 146 PLASVVKPSSASVFIK-YRPTANVTALLPSIKNLVVHSVEGLTYENVAV 193 >gi|207739223|ref|YP_002257616.1| hrp lipoprotein hrcj [Ralstonia solanacearum IPO1609] gi|206592596|emb|CAQ59502.1| hrp conserved lipoprotein hrcj [Ralstonia solanacearum IPO1609] Length = 267 Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 14/169 (8%) Query: 50 NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIH--LAAQGLPSS 105 L+ +L D N + L +A ID + D+G + SV AR L A GLP Sbjct: 28 QLFAQLTEVDANDMLTVLLQAGIDAQKTTPDDGKTWSVLVDDEAFARSMEVLHAHGLPRE 87 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMG 162 + ++F K GL S E RVR + G ++++T+ I G+ A V IV+P+ Sbjct: 88 KYANLGDIFKK---DGLISTPTE-ERVRFIYGVSQQLSQTLSRIDGVAVANVQIVLPNND 143 Query: 163 SFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTV 209 + +ASV I+ P+ +A +I++LV +V L +V V Sbjct: 144 PLASVVKPSSASVFIK-YRPTANVTALLPSIKNLVVHSVEGLTYENVAV 191 >gi|207724588|ref|YP_002254985.1| hrp lipoprotein hrcj [Ralstonia solanacearum MolK2] gi|206589810|emb|CAQ36771.1| hrp conserved lipoprotein hrcj [Ralstonia solanacearum MolK2] Length = 268 Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 14/169 (8%) Query: 50 NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIH--LAAQGLPSS 105 L+ +L D N + L +A ID + D+G + SV AR L A GLP Sbjct: 29 QLFAQLTEVDANDMLTVLLQAGIDAQKTTPDDGKTWSVLVDDEAFARSMEVLHAHGLPRE 88 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMG 162 + ++F K GL S E RVR + G ++++T+ I G+ A V IV+P+ Sbjct: 89 KYANLGDIFKK---DGLISTPTE-ERVRFIYGVSQQLSQTLSRIDGVAVANVQIVLPNND 144 Query: 163 SFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTV 209 + +ASV I+ P+ +A +I++LV +V L +V V Sbjct: 145 PLASVVKPSSASVFIK-YRPTANVTALLPSIKNLVVHSVEGLTYENVAV 192 >gi|83747854|ref|ZP_00944887.1| HrcJ [Ralstonia solanacearum UW551] gi|83725501|gb|EAP72646.1| HrcJ [Ralstonia solanacearum UW551] Length = 269 Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 14/169 (8%) Query: 50 NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIH--LAAQGLPSS 105 L+ +L D N + L +A ID + D+G + SV AR L A GLP Sbjct: 30 QLFAQLTEVDANDMLTVLLQAGIDAQKTTPDDGKTWSVLVDDEAFARSMEVLHAHGLPRE 89 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMG 162 + ++F K GL S E RVR + G ++++T+ I G+ A V IV+P+ Sbjct: 90 KYANLGDIFKK---DGLISTPTE-ERVRFIYGVSQQLSQTLSRIDGVAVANVQIVLPNND 145 Query: 163 SFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTV 209 + +ASV I+ P+ +A +I++LV +V L +V V Sbjct: 146 PLASVVKPSSASVFIK-YRPTANVTALLPSIKNLVVHSVEGLTYENVAV 193 >gi|134294015|ref|YP_001117751.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Burkholderia vietnamiensis G4] gi|134137172|gb|ABO58286.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia vietnamiensis G4] Length = 297 Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust. Identities = 60/173 (34%), Positives = 81/173 (46%), Gaps = 18/173 (10%) Query: 51 LYVKLEVSDVNRISVALSEANI------DFR-ISD-NGSSISVPSSMVGKARIHLAAQGL 102 LY L D N + L +A I D R SD N +SV + A L A GL Sbjct: 36 LYSGLSERDANEMVAVLGDAGIGASKDNDARDTSDRNAWQVSVADGDMQSALTVLQANGL 95 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMP 159 P S S ELF K GL S E RVR L G +++RT+Q I G+V ARV +V+P Sbjct: 96 PKPSYASLGELFQKQ---GLVSTPAE-ERVRYLYGVSQDLSRTLQDIEGVVVARVQVVIP 151 Query: 160 DMGSFRKIGARPTASVMIRAINPSVYKSAEA--IRHLVAAAVPNLDMGDVTVL 210 + +A+V IR P V A A ++ LVA ++ L +V++ Sbjct: 152 ENDPLADKIKPSSAAVYIR-YRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSLF 203 >gi|21241182|ref|NP_640764.1| HrcJ protein [Xanthomonas axonopodis pv. citri str. 306] gi|21106489|gb|AAM35300.1| HrcJ protein [Xanthomonas axonopodis pv. citri str. 306] Length = 253 Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 11/117 (9%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR--ISDNGSS--ISVPSSMVGKARIHLAAQGLPSSS 106 LY L +D N + L A +D D+G + I+ P V + L A GLP Sbjct: 23 LYSGLTENDANDMLEVLLHAGVDASKVTPDDGKTWAINAPHDQVSYSLEVLRAHGLPHER 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPD 160 + E+F K GL S E RVR + G ++++T+ +I G+++A V IV+P+ Sbjct: 83 HANLGEMFKKD---GLISTPTE-ERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPN 135 >gi|294665985|ref|ZP_06731248.1| HrcJ protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604233|gb|EFF47621.1| HrcJ protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 253 Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 11/117 (9%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106 LY L +D N + L A +D D+G + +V P V + L A GLP Sbjct: 23 LYSGLTENDANDMLEVLLHAGVDASKVTPDDGKTWAVNAPHDQVSYSLEVLRAHGLPHER 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPD 160 + E+F K GL S E RVR + G ++++T+ +I G+++A V IV+P+ Sbjct: 83 HANLGEMFKKD---GLISTPTE-ERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPN 135 >gi|269105034|ref|ZP_06157729.1| type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ PscJ) [Photobacterium damselae subsp. damselae CIP 102761] gi|268160669|gb|EEZ39167.1| type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ PscJ) [Photobacterium damselae subsp. damselae CIP 102761] Length = 265 Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 16/125 (12%) Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA-----QGLPSSSSNSGYELFDKV 117 +SV LSE + + D +++ + MV A+I A +G P ++ E+F K Sbjct: 54 LSVLLSEGVVATKEPDKDNTVKL---MVDNAQIAFAIDALKRKGYPREQFSTLKEVFPKD 110 Query: 118 NSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPT---A 173 + ++S + E R + A E++ T+ I G++ ARVH+V+ D + G RPT A Sbjct: 111 DL--ISSPLAERARLIYAKSQELSATLSQIDGVLVARVHVVLKDQN--LRPGERPTPASA 166 Query: 174 SVMIR 178 SV I+ Sbjct: 167 SVFIK 171 >gi|294625833|ref|ZP_06704449.1| HrcJ protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|159024050|gb|ABW87278.1| HrcJ [Xanthomonas fuscans subsp. fuscans] gi|292599861|gb|EFF43982.1| HrcJ protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 253 Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 11/117 (9%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106 LY L +D N + L A +D D+G + +V P V + L A GLP Sbjct: 23 LYSGLTENDANDMLEVLLHAGVDASKVTPDDGKTWAVNAPHDQVSYSLEVLRAHGLPHER 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPD 160 + E+F K GL S E RVR + G ++++T+ +I G+++A V IV+P+ Sbjct: 83 HANLGEMFKKD---GLISTPTE-ERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPN 135 >gi|30524897|gb|AAP34342.1|AF499777_10 HrcJ [Xanthomonas axonopodis pv. glycines] Length = 253 Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 11/117 (9%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR--ISDNGSS--ISVPSSMVGKARIHLAAQGLPSSS 106 LY L +D N + L A +D D+G + I+ P V + L A GLP Sbjct: 23 LYSGLTENDANDMLEVLLHAGVDASKVTPDDGKTWAINAPHDQVSYSLEVLRAHGLPHER 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPD 160 + E+F K GL S E RVR + G ++++T+ +I G+++A V IV+P+ Sbjct: 83 HANLGEMFKKD---GLISTPTE-ERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPN 135 >gi|300697469|ref|YP_003748130.1| type III secretion system lipoprotein HrcJ [Ralstonia solanacearum CFBP2957] gi|299074193|emb|CBJ53738.1| Type III secretion system lipoprotein HrcJ [Ralstonia solanacearum CFBP2957] Length = 269 Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 14/169 (8%) Query: 50 NLYVKLEVSDVNRISVALSEANIDFRIS--DNGSSISVPSSMVGKARIH--LAAQGLPSS 105 L+ +L D N + L +A ID + + D+G + SV AR L A GLP Sbjct: 30 QLFAQLTEVDANDMLTVLLQAGIDAQKTSPDDGKTWSVLVDDEAFARSMEVLHAHGLPRE 89 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMG 162 + ++F K GL S E RVR + G ++++T+ I G+ A V IV+P+ Sbjct: 90 KYANLGDIFKK---DGLISTPTE-ERVRFIYGVSQQLSQTLSRIDGVAVANVQIVLPNND 145 Query: 163 SFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTV 209 + +ASV I+ P+ +A +I++LV +V L +V V Sbjct: 146 PLASVVKPSSASVFIK-YRPTANVTALLPSIKNLVVHSVEGLTYENVAV 193 >gi|78045985|ref|YP_362160.1| HrcJ protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325927680|ref|ZP_08188908.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Xanthomonas perforans 91-118] gi|462305|sp|P80152|HRB3_XANEU RecName: Full=Protein hrpB3; Flags: Precursor gi|398111|gb|AAA27604.1| hrpB3 [Xanthomonas campestris] gi|984880|gb|AAB08458.1| HrpB3 [Xanthomonas euvesicatoria] gi|78034415|emb|CAJ22060.1| HrcJ protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325541881|gb|EGD13395.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Xanthomonas perforans 91-118] Length = 253 Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 11/117 (9%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106 LY L +D N + L A +D D+G + +V P V + L A GLP Sbjct: 23 LYSGLTENDANDMLEVLLHAGVDASKVTPDDGKTWAVNAPHDQVSYSLEVLRAHGLPHER 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPD 160 + E+F K GL S E RVR + G ++++T+ +I G+++A V IV+P+ Sbjct: 83 HANLGEMFKKD---GLISTPTE-ERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPN 135 >gi|2905649|gb|AAC03547.1| cytoplasmic linker protein CLIP-170 [Gallus gallus] Length = 1099 Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust. Identities = 48/191 (25%), Positives = 83/191 (43%), Gaps = 35/191 (18%) Query: 265 ELNMDTQQIREIVYDPDSKVERSIRLSKD----AQRSETSQPESAVTVEQNMPHVSDRKV 320 EL + +Q+ +I + E++++L K+ AQ++E SQ E+ T ++ + + D+ Sbjct: 900 ELRLKERQLEQIQLELTKANEKAVQLQKNVEQTAQKAEQSQQETLKTHQEELKKMQDQLT 959 Query: 321 PLPRSLENTDK--KEEQSNYEINTKSIATTHD----NYKL------ERLSIAVVVNKGRL 368 + + +E + K+ Q+ YE T + T HD +K E L A N Sbjct: 960 DMKKQMETSQNQYKDLQAKYEKETSEMITKHDADIKGFKQNLLDAEEALKAAQKKNDELE 1019 Query: 369 T--EVLGRSADQGKIDSYLAEI----------------NKIVSAATGINSRRGDTITITS 410 T E L + A+Q K D E+ KI + A+ NSR+ + Sbjct: 1020 TQAEELKKQAEQAKADKRAEEVLQTMEKVTKEKDAIHQEKIETLASLENSRQTNEKLQNE 1079 Query: 411 MDFL-ENQLFN 420 +D L +N L N Sbjct: 1080 LDMLKQNNLKN 1090 >gi|269302618|gb|ACZ32718.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Chlamydophila pneumoniae LPCoLN] Length = 335 Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust. Identities = 47/136 (34%), Positives = 71/136 (52%), Gaps = 17/136 (12%) Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT-SFMQEITRVRALEG---E 138 I+VPS+ + +A L GLP S +LF K GL S +QE ++R EG + Sbjct: 72 IAVPSAQITEALAILNQAGLPRMKGTSLLDLFAKQ---GLVPSELQE--KIRYQEGLSEQ 126 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI--RAI--NPSVYKSAEAIRHL 194 +A TI+ + GIV A V I + + TASV I R + NP+ ++ I+ L Sbjct: 127 MASTIRKMDGIVDASVQI---SFTTENEDNLPLTASVYIKHRGVLDNPNSIMVSK-IKRL 182 Query: 195 VAAAVPNLDMGDVTVL 210 +A+AVP L +V+V+ Sbjct: 183 IASAVPGLVPENVSVV 198 >gi|115358974|ref|YP_776112.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Burkholderia ambifaria AMMD] gi|115284262|gb|ABI89778.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia ambifaria AMMD] Length = 309 Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust. Identities = 60/173 (34%), Positives = 82/173 (47%), Gaps = 18/173 (10%) Query: 51 LYVKLEVSDVNRISVALSEANI------DFR-ISD-NGSSISVPSSMVGKARIHLAAQGL 102 LY L D N++ L +A I D R SD N +SV + A L A GL Sbjct: 50 LYSGLSERDANQMVAVLGDAGISASKDNDARDTSDRNAWLVSVADGDMQSALTVLQANGL 109 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMP 159 P S S ELF K GL S E RVR L G +++RT+Q I G+V ARV +V+P Sbjct: 110 PKPSYASLGELFQKQ---GLVSTPAE-ERVRYLYGVSQDLSRTLQDIEGVVVARVQVVIP 165 Query: 160 DMGSFRKIGARPTASVMIRAINPSVYKSAEA--IRHLVAAAVPNLDMGDVTVL 210 + +A+V IR P V A A ++ LVA ++ L +V++ Sbjct: 166 ENDPLADKIKPSSAAVYIR-YRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSLF 217 >gi|124382226|ref|YP_001025747.1| type III secretion inner membrane protein SctJ [Burkholderia mallei NCTC 10229] Length = 174 Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 4/83 (4%) Query: 131 RVRALEG---EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-INPSVYK 186 RVR + G E++ T+ I G+V ARVHIV+P+ ++ +ASV I+ N ++ Sbjct: 8 RVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPLAQVAKPSSASVFIKYRPNANLAT 67 Query: 187 SAEAIRHLVAAAVPNLDMGDVTV 209 I++LV +V L +V+V Sbjct: 68 LTPQIKNLVVHSVEGLTYDEVSV 90 >gi|167589321|ref|ZP_02381709.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia ubonensis Bu] Length = 264 Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust. Identities = 57/175 (32%), Positives = 83/175 (47%), Gaps = 20/175 (11%) Query: 50 NLYVKLEVSDVNRISVALSEANIDFR-------ISD-NGSSISVPSSMVGKARIHLAAQG 101 LY L +D N++ L +A ID SD + +SV + A L A G Sbjct: 35 ELYSGLSEADANQMIAVLGDAGIDASKDNDARDTSDRDAWQVSVADGDLHAALTVLRANG 94 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVM 158 LP S ELF K GL S E RVR L G +++RT+Q I G+V ARV +V+ Sbjct: 95 LPKPRHASLGELFQKQ---GLVSTPAE-ERVRYLYGVSQDLSRTLQDIEGVVVARVQVVI 150 Query: 159 PDMGSFR-KIGARPTASVMIRAINPSVYKSAEA--IRHLVAAAVPNLDMGDVTVL 210 P+ KI RP+++ + P V A A ++ LVA ++ L +V++ Sbjct: 151 PENDPLADKI--RPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSLF 203 >gi|45384404|ref|NP_990273.1| CAP-Gly domain-containing linker protein 1 [Gallus gallus] gi|3024541|sp|O42184|CLIP1_CHICK RecName: Full=CAP-Gly domain-containing linker protein 1; AltName: Full=Cytoplasmic linker protein 170; Short=CLIP-170; AltName: Full=Restin gi|2338714|gb|AAC60344.1| restin [Gallus gallus] Length = 1433 Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust. Identities = 40/164 (24%), Positives = 74/164 (45%), Gaps = 22/164 (13%) Query: 265 ELNMDTQQIREIVYDPDSKVERSIRLSKD----AQRSETSQPESAVTVEQNMPHVSDRKV 320 EL + +Q+ +I + E++++L K+ AQ++E SQ E+ T ++ + + D+ Sbjct: 934 ELRLKERQLEQIQLELTKANEKAVQLQKNVEQTAQKAEQSQQETLKTHQEELKKMQDQLT 993 Query: 321 PLPRSLENTDK--KEEQSNYEINTKSIATTHD----NYKL------ERLSIAVVVNKGRL 368 + + +E + K+ Q+ YE T + T HD +K E L A N Sbjct: 994 DMKKQMETSQNQYKDLQAKYEKETSEMITKHDADIKGFKQNLLDAEEALKAAQKKNDELE 1053 Query: 369 T--EVLGRSADQGKIDSYLAEI----NKIVSAATGINSRRGDTI 406 T E L + A+Q K D E+ K+ I+ + +T+ Sbjct: 1054 TQAEELKKQAEQAKADKRAEEVLQTMEKVTKEKDAIHQEKIETL 1097 >gi|207110812|ref|ZP_03244974.1| flagellar MS-ring protein [Helicobacter pylori HPKX_438_CA4C1] Length = 82 Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 4/73 (5%) Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLVAAAVPNL 202 ++ I+ A VHI +P F P+ASVM++ + P + S I++L+AAAVP L Sbjct: 1 LNPILKANVHIAIPKDSVFVAKEVPPSASVMLK-LKPDMKLSPTQILGIKNLIAAAVPKL 59 Query: 203 DMGDVTVLDSTGK 215 +V +++ G+ Sbjct: 60 TTENVKIVNENGE 72 >gi|15618737|ref|NP_225023.1| Yop proteins translocation lipoprotein J [Chlamydophila pneumoniae CWL029] gi|15836361|ref|NP_300885.1| Yop translocation J [Chlamydophila pneumoniae J138] gi|16752212|ref|NP_445580.1| type III secretion protein SctJ [Chlamydophila pneumoniae AR39] gi|33242188|ref|NP_877129.1| secretion protein [Chlamydophila pneumoniae TW-183] gi|4377140|gb|AAD18965.1| Yop proteins translocation lipoprotein J [Chlamydophila pneumoniae CWL029] gi|6672018|dbj|BAA88646.1| Yop translocation J [Chlamydophila pneumoniae] gi|7189957|gb|AAF38818.1| type III secretion protein SctJ [Chlamydophila pneumoniae AR39] gi|8979202|dbj|BAA99036.1| Yop translocation J [Chlamydophila pneumoniae J138] gi|33236699|gb|AAP98786.1| secretion protein [Chlamydophila pneumoniae TW-183] Length = 335 Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust. Identities = 46/136 (33%), Positives = 71/136 (52%), Gaps = 17/136 (12%) Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT-SFMQEITRVRALEG---E 138 I+VPS+ + +A L GLP S +LF K GL S +QE ++R EG + Sbjct: 72 IAVPSAQITEALAILNQAGLPRMKGTSLLDLFAKQ---GLVPSELQE--KIRYQEGLSEQ 126 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI--RAI--NPSVYKSAEAIRHL 194 +A TI+ + G+V A V I + + TASV I R + NP+ ++ I+ L Sbjct: 127 MASTIRKMDGVVDASVQI---SFTTENEDNLPLTASVYIKHRGVLDNPNSIMVSK-IKRL 182 Query: 195 VAAAVPNLDMGDVTVL 210 +A+AVP L +V+V+ Sbjct: 183 IASAVPGLVPENVSVV 198 >gi|168334544|ref|ZP_02692700.1| flagellar M-ring protein FliF [Epulopiscium sp. 'N.t. morphotype B'] Length = 459 Score = 38.1 bits (87), Expect = 4.2, Method: Compositional matrix adjust. Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 6/141 (4%) Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV-NSFGLTSFMQEITRVRALEG 137 +G +I V + A+I L + +P Y +D + NS T + + + Sbjct: 6 DGRTIQVNEEDLNTAKIILTRENVPRGD----YTFYDAITNSMSTTEAEKRTKLIYLKQV 61 Query: 138 EIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVA 196 ++ + + GI A V + +P+ SF +ASV++ E I L++ Sbjct: 62 DLENILMGMEGIAEATVQLNVPEEKNSFIASQMESSASVVLTLHRQISDNQIEGIARLLS 121 Query: 197 AAVPNLDMGDVTVLDSTGKLL 217 AV NL + ++T+LDS +L Sbjct: 122 NAVDNLKLENITILDSDSNVL 142 >gi|299069234|emb|CBJ40494.1| Type III secretion system lipoprotein HrcJ [Ralstonia solanacearum CMR15] Length = 269 Score = 37.7 bits (86), Expect = 4.9, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 14/169 (8%) Query: 50 NLYVKLEVSDVNRISVALSEANIDFRIS--DNGSSISV--PSSMVGKARIHLAAQGLPSS 105 L+ +L +D N + L +A ID + + D+G + SV ++ L GLP Sbjct: 30 QLFAQLTEADANDMLTVLLQAGIDAQKTSPDDGKTWSVLVDDDAFARSMEVLHGHGLPRE 89 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMG 162 + ++F K GL S E RVR + G ++++T+ I G+ A V IV+P+ Sbjct: 90 KYANLGDIFKK---DGLISTPTE-ERVRFIYGVSQQLSQTLSRIDGVAVASVQIVLPNND 145 Query: 163 SFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTV 209 + +ASV I+ P+ +A +I++LV +V L +V V Sbjct: 146 PLASVVKPSSASVFIK-YRPTANVTALLPSIKNLVVHSVEGLTYENVAV 193 >gi|107025872|ref|YP_623383.1| Type III secretion system lipoprotein HrcJ/YscJ [Burkholderia cenocepacia AU 1054] gi|116692944|ref|YP_838477.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Burkholderia cenocepacia HI2424] gi|105895246|gb|ABF78410.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia cenocepacia AU 1054] gi|116650944|gb|ABK11584.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia cenocepacia HI2424] Length = 292 Score = 37.7 bits (86), Expect = 5.0, Method: Compositional matrix adjust. Identities = 60/173 (34%), Positives = 82/173 (47%), Gaps = 18/173 (10%) Query: 51 LYVKLEVSDVNRISVALSEANI------DFR-ISD-NGSSISVPSSMVGKARIHLAAQGL 102 LY L D N++ L +A I D R SD N +SV + A L A GL Sbjct: 36 LYSGLSERDANQMVAVLGDAGISASKDNDARDTSDRNAWLVSVADGDMQAALTVLQANGL 95 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMP 159 P S S ELF K GL S E RVR L G +++RT+Q I G+V ARV +V+P Sbjct: 96 PKPSYASLGELFQKQ---GLVSTPAE-ERVRYLYGVSQDLSRTLQDIEGVVVARVQVVIP 151 Query: 160 DMGSFRKIGARPTASVMIRAINPSVYKSAEA--IRHLVAAAVPNLDMGDVTVL 210 + +A+V IR P V A A ++ LVA ++ L +V++ Sbjct: 152 ENDPLADKIKPSSAAVYIR-YRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSLF 203 >gi|163802017|ref|ZP_02195913.1| putative type III secretion lipoprotein [Vibrio sp. AND4] gi|159174158|gb|EDP58966.1| putative type III secretion lipoprotein [Vibrio sp. AND4] Length = 247 Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 69/138 (50%), Gaps = 17/138 (12%) Query: 51 LYVKLEVSDVNR-ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA-----QGLPS 104 LY ++ + N +S+ LSE + + D +++ + +V A+I A G P Sbjct: 23 LYTGVDQQEGNEMLSILLSEGVVATKEPDKDNTVKL---LVDNAQIAFAVDALKRNGYPK 79 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 ++ E+F K + ++S + E R + A E++ T+ I G++ ARVH+V+ D Sbjct: 80 EQFSTLKEVFPKDDL--ISSPLAERARLIYAKSQELSSTLSQIDGVLVARVHVVLEDQN- 136 Query: 164 FRKIGARPT---ASVMIR 178 + G RPT ASV I+ Sbjct: 137 -LRPGERPTPASASVFIK 153 >gi|300693814|ref|YP_003749787.1| type III secretion system lipoprotein hrcj [Ralstonia solanacearum PSI07] gi|299075851|emb|CBJ35160.1| Type III secretion system lipoprotein HrcJ [Ralstonia solanacearum PSI07] Length = 269 Score = 37.7 bits (86), Expect = 5.2, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 80/169 (47%), Gaps = 14/169 (8%) Query: 50 NLYVKLEVSDVNRISVALSEANIDFRIS--DNGSSISVPSSMVGKARIH--LAAQGLPSS 105 L+ +L +D N + L +A +D + + D+G + SV AR L A GLP Sbjct: 30 QLFAQLTEADANDMLTVLLQAGVDAQKTSPDDGKTWSVLVDDDAFARSMEVLHAHGLPRE 89 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMG 162 + ++F K GL S E RVR + G ++++T+ I G+ A V IV+P+ Sbjct: 90 KYANLGDIFKK---DGLISTPTE-ERVRFIYGVSQQLSQTLSRIDGVAVASVQIVLPNND 145 Query: 163 SFRKIGARPTASVMIRAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTV 209 + +ASV I+ P+ V +I++LV +V L +V V Sbjct: 146 PLASVVKPSSASVFIK-YRPTANVTSLLPSIKNLVVHSVEGLTYENVAV 193 >gi|182441001|dbj|BAG24126.1| HrcJ [Pseudomonas cichorii] Length = 263 Score = 37.7 bits (86), Expect = 5.4, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 83/162 (51%), Gaps = 8/162 (4%) Query: 50 NLYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 L+ L D N + L+ NID R+ G ++ V + + +A L A GLP S Sbjct: 26 ELHRDLTEQDANEVLAELAGKNIDAQKRLDKGGVAVLVSTQDISRAVKVLEAVGLPRRSR 85 Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 ++ E+F K ++S M+E R + AL E+ +T+ I G+V ARVH+V+P+ + + Sbjct: 86 STLGEVFRKEGV--ISSPMEERARYIYALSQELEQTLSQIDGVVVARVHVVLPERIAPGE 143 Query: 167 IGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGD 206 +A+V I+ P + + IR +VA+++P + D Sbjct: 144 PVQPASAAVFIK-YRPDLEPDSVLPRIRRMVASSIPGMANAD 184 >gi|170737791|ref|YP_001779051.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Burkholderia cenocepacia MC0-3] gi|169819979|gb|ACA94561.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia cenocepacia MC0-3] Length = 295 Score = 37.4 bits (85), Expect = 6.2, Method: Compositional matrix adjust. Identities = 60/173 (34%), Positives = 82/173 (47%), Gaps = 18/173 (10%) Query: 51 LYVKLEVSDVNRISVALSEANI------DFR-ISD-NGSSISVPSSMVGKARIHLAAQGL 102 LY L D N++ L +A I D R SD N +SV + A L A GL Sbjct: 36 LYSGLSERDANQMVAVLGDAGISASKDNDARDTSDRNAWLVSVADGDMQAALTVLQANGL 95 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMP 159 P S S ELF K GL S E RVR L G +++RT+Q I G+V ARV +V+P Sbjct: 96 PKPSYASLGELFQKQ---GLVSTPAE-ERVRYLYGVSQDLSRTLQDIEGVVVARVQVVIP 151 Query: 160 DMGSFRKIGARPTASVMIRAINPSVYKSAEA--IRHLVAAAVPNLDMGDVTVL 210 + +A+V IR P V A A ++ LVA ++ L +V++ Sbjct: 152 ENDPLADKIKPSSAAVYIR-YRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSLF 203 >gi|206563892|ref|YP_002234655.1| type III secretion system protein [Burkholderia cenocepacia J2315] gi|18092671|gb|AAL59400.1| BcscJ [Burkholderia cenocepacia] gi|28394252|gb|AAO31727.1| BcscJ [Burkholderia cenocepacia] gi|198039932|emb|CAR55910.1| type III secretion system protein [Burkholderia cenocepacia J2315] Length = 294 Score = 37.4 bits (85), Expect = 6.6, Method: Compositional matrix adjust. Identities = 60/173 (34%), Positives = 82/173 (47%), Gaps = 18/173 (10%) Query: 51 LYVKLEVSDVNRISVALSEANI------DFR-ISD-NGSSISVPSSMVGKARIHLAAQGL 102 LY L D N++ L +A I D R SD N +SV + A L A GL Sbjct: 36 LYSGLSERDANQMVAVLGDAGISASKDNDARDTSDRNAWLVSVADGDMQAALTVLQANGL 95 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMP 159 P S S ELF K GL S E RVR L G +++RT+Q I G+V ARV +V+P Sbjct: 96 PKPSYASLGELFQKQ---GLVSTPAE-ERVRYLYGVSQDLSRTLQDIEGVVVARVQVVIP 151 Query: 160 DMGSFRKIGARPTASVMIRAINPSVYKSAEA--IRHLVAAAVPNLDMGDVTVL 210 + +A+V IR P V A A ++ LVA ++ L +V++ Sbjct: 152 ENDPLADKIKPSSAAVYIR-YRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSLF 203 >gi|172063766|ref|YP_001811417.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Burkholderia ambifaria MC40-6] gi|171996283|gb|ACB67201.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia ambifaria MC40-6] Length = 295 Score = 37.4 bits (85), Expect = 6.8, Method: Compositional matrix adjust. Identities = 60/173 (34%), Positives = 81/173 (46%), Gaps = 18/173 (10%) Query: 51 LYVKLEVSDVNRISVALSEANI------DFR-ISD-NGSSISVPSSMVGKARIHLAAQGL 102 LY L D N++ L A I D R SD N +SV + A L A GL Sbjct: 36 LYSGLSERDANQMVAVLGAAGISASKDNDARDTSDRNAWLVSVADGDMQSALTVLQANGL 95 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMP 159 P S S ELF K GL S E RVR L G +++RT+Q I G+V ARV +V+P Sbjct: 96 PKPSYASLGELFQKQ---GLVSTPAE-ERVRYLYGVSQDLSRTLQDIEGVVVARVQVVIP 151 Query: 160 DMGSFRKIGARPTASVMIRAINPSVYKSAEA--IRHLVAAAVPNLDMGDVTVL 210 + +A+V IR P V A A ++ LVA ++ L +V++ Sbjct: 152 ENDPLADKIKPSSAAVYIR-YRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSLF 203 >gi|76574834|gb|ABA47308.1| HrcJ [Pseudomonas cichorii] Length = 263 Score = 37.0 bits (84), Expect = 7.9, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 82/161 (50%), Gaps = 6/161 (3%) Query: 50 NLYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 L+ L D N + L+ NID R+ G ++ V + + +A L A GLP S Sbjct: 26 ELHRDLTEQDANEVLAELAGKNIDAQKRLDKGGVAVLVSTQDISRAVRVLEAVGLPRRSR 85 Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 ++ E+F K ++S M+E R + AL E+ +T+ I G+V ARVH+V+P+ + + Sbjct: 86 STLGEVFRKEGV--ISSPMEERARYIYALSQELEQTLSQIDGVVVARVHVVLPERIAPGE 143 Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGD 206 +A+V I+ N S IR +VA+++P + D Sbjct: 144 PVQPASAAVFIKYRNDLEPDSILPRIRRMVASSIPGMANAD 184 >gi|291562020|emb|CBL40835.1| Flagellar biosynthesis/type III secretory pathway lipoprotein [butyrate-producing bacterium SS3/4] Length = 110 Score = 37.0 bits (84), Expect = 8.0, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 6/90 (6%) Query: 18 GRTRILILASVILVPIMLFMAARFFV----NSPHYDNLYVKLEVSDVNRISVALSEANID 73 G+T+ +I +VI ++ AA V Y L+ + D + L + +D Sbjct: 17 GKTKKMI--AVIAAGTIILAAAGLLVLNIGTKKGYSTLFTGMSSDDAQAVVSLLQDEGVD 74 Query: 74 FRISDNGSSISVPSSMVGKARIHLAAQGLP 103 +R +D S+ V S V K R L ++G P Sbjct: 75 YRYNDKNGSVQVMSDTVDKTRAELLSKGYP 104 >gi|46398281|gb|AAS91835.1| AscJ [Aeromonas hydrophila] Length = 246 Score = 37.0 bits (84), Expect = 8.0, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 8/105 (7%) Query: 78 DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR---A 134 D + V S V +A L +G P S ++ ++F K GL S E R R A Sbjct: 53 DGNIKLLVEESDVAQAIETLKRKGYPRESFSTLQDVFPK---DGLISSPTE-ERARLTYA 108 Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMG-SFRKIGARPTASVMIR 178 EI+ T+ I G++ ARVH+V+P+ F K + +ASV I+ Sbjct: 109 KAQEISNTLSEIDGVLVARVHVVLPEGNEGFNKKTSPASASVFIK 153 >gi|308126335|ref|ZP_07663715.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio parahaemolyticus AQ4037] gi|308110706|gb|EFO48246.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio parahaemolyticus AQ4037] Length = 190 Score = 37.0 bits (84), Expect = 8.5, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 9/131 (6%) Query: 85 VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTI 143 V SS + A L +G P ++ E+F K + ++S + E R V A E++ T+ Sbjct: 3 VDSSQIAFAVDALKRKGYPREQFSTLKEVFPKDDL--ISSPLAERARLVYAKSQELSSTL 60 Query: 144 QSISGIVAARVHIVMPDMGSFRKIGARPT---ASVMIR-AINPSVYKSAEAIRHLVAAAV 199 I G++ ARVH+V+ D + G RPT ASV I+ A + ++ I+ LV ++ Sbjct: 61 SQIDGVLVARVHVVLEDQD--LRPGERPTPASASVFIKHAADVALDSYVPQIKLLVNNSI 118 Query: 200 PNLDMGDVTVL 210 L+ ++V+ Sbjct: 119 EGLNYDRISVV 129 >gi|297206189|ref|ZP_06923584.1| methionyl-tRNA formyltransferase [Lactobacillus jensenii JV-V16] gi|297149315|gb|EFH29613.1| methionyl-tRNA formyltransferase [Lactobacillus jensenii JV-V16] Length = 329 Score = 37.0 bits (84), Expect = 8.9, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 10/90 (11%) Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 ++ E +N FLG NF + V+ L D Q+ +V PD KV R +L Sbjct: 7 EYHNERGMNMTSVIFLGTPNFGATVLEGLIKDNYQVLAVVTQPDKKVGRKQKL------- 59 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLE 327 TS P + + ++P + LPRS E Sbjct: 60 -TSSPVKEMAQKYDLPVYQPAR--LPRSEE 86 Searching..................................................done Results from round 2 >gi|254780695|ref|YP_003065108.1| flagellar MS-ring protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040372|gb|ACT57168.1| flagellar MS-ring protein [Candidatus Liberibacter asiaticus str. psy62] Length = 563 Score = 675 bits (1743), Expect = 0.0, Method: Composition-based stats. Identities = 563/563 (100%), Positives = 563/563 (100%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV Sbjct: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF Sbjct: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI Sbjct: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE Sbjct: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS Sbjct: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA Sbjct: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN Sbjct: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL Sbjct: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE Sbjct: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 Query: 541 RFAKILRKWARSEIEDRYTQHIS 563 RFAKILRKWARSEIEDRYTQHIS Sbjct: 541 RFAKILRKWARSEIEDRYTQHIS 563 >gi|315121860|ref|YP_004062349.1| flagellar MS-ring protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495262|gb|ADR51861.1| flagellar MS-ring protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 560 Score = 580 bits (1494), Expect = e-163, Method: Composition-based stats. Identities = 420/560 (75%), Positives = 480/560 (85%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 MAI+DQLLQFFKS SLGR R+ I+ +V+ I L +AA FF++SP YD+LYVKLE SDV Sbjct: 1 MAIIDQLLQFFKSAMSLGRMRLFIVGAVMFASIALLLAASFFMSSPIYDSLYVKLEASDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 N+ISVALSEA+IDFRI+ NGSSI VPS ++ KAR+ LA QGLP+SS+NSGYELFDKVNSF Sbjct: 61 NKISVALSEASIDFRIAGNGSSILVPSHLLSKARLRLAEQGLPNSSNNSGYELFDKVNSF 120 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQEITRVRALEGEI+RTIQ ISGIVAARVHIVMPDMGSFR+IGA+PTASVM+R + Sbjct: 121 GLTSFMQEITRVRALEGEISRTIQDISGIVAARVHIVMPDMGSFRRIGAKPTASVMVRVV 180 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240 NPSVYKSAEAIRHLVAAAVP LD+ DVTVLDSTGKLL ANE+ERNI GKSL IVQA+QHE Sbjct: 181 NPSVYKSAEAIRHLVAAAVPGLDISDVTVLDSTGKLLVANEIERNIFGKSLGIVQAVQHE 240 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 IEMNINKALA FLG+DNFRSAV+AELN D QQI+EIVYDPDS+VERS+RLSKD QRSE+ Sbjct: 241 IEMNINKALAPFLGIDNFRSAVIAELNTDIQQIKEIVYDPDSRVERSVRLSKDVQRSESH 300 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 Q ESAVTVEQNMPHVS++ PR+LENTDKKEEQSNYEINTKSI+TTH+NYKLERLSIA Sbjct: 301 QQESAVTVEQNMPHVSEKNATSPRALENTDKKEEQSNYEINTKSISTTHNNYKLERLSIA 360 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 VVVNKGRL E+LG S +Q K+DSYLAEIN+IVSAATGINS RGD ITITSMDFL++QL N Sbjct: 361 VVVNKGRLMEMLGPSMEQSKVDSYLAEINRIVSAATGINSIRGDNITITSMDFLDDQLLN 420 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 S TVQVSFMDILSR+F+ +INAL FL LL+ G+H LR +NID K+ E+ KS L Sbjct: 421 SSTVQVSFMDILSRNFSIIINALFFLTLVLLMALFGVHVLRGFNNIDLIKRKEMEAKSAL 480 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 S P I+S T LM +D++A DS QDI S + N QS IN+YV++QSD RLL MIEINEE Sbjct: 481 STPSIASTAETTLMSSDDMASDSFRQDILSRNNNFQSDINNYVAEQSDRRLLRMIEINEE 540 Query: 541 RFAKILRKWARSEIEDRYTQ 560 RF+KI+RKW RSEIE RYTQ Sbjct: 541 RFSKIIRKWVRSEIESRYTQ 560 >gi|241203091|ref|YP_002974187.1| flagellar MS-ring protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856981|gb|ACS54648.1| flagellar M-ring protein FliF [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 563 Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 295/564 (52%), Positives = 395/564 (70%), Gaps = 10/564 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M +L+QL+Q FK+ SLGRTR++IL V V I + +AA FVN P + LYV L+ D+ Sbjct: 1 MNLLNQLVQIFKNFGSLGRTRLMILGGVGAVSIAIVLAAALFVNKPAQETLYVGLDSPDL 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 N+IS+AL+EANI+F++ +G+SISVP+ M GKAR+ LA +GLP +S+N+GYELFD V S Sbjct: 61 NQISMALAEANINFQVGTDGTSISVPAGMTGKARLMLAERGLP-NSANAGYELFDNVGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEIARTIQSISGI AARVHIVMP++G+FRK +PTASVMIRA Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQSISGITAARVHIVMPEVGNFRKAEQKPTASVMIRAS 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239 + +A +IRHLVA+AVP LD+ DVT+LDS G+LL + +E + L +SL+IVQ +Q Sbjct: 180 ATTGRSAATSIRHLVASAVPGLDVDDVTILDSAGQLLASGDEASNSSLNRSLNIVQNVQQ 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 E+E NI+KALA FLG+DNFRS+V A+LN D QQI+E YDP+SKVERS+R +K+AQ+S+ Sbjct: 240 EVESNIDKALAPFLGMDNFRSSVTADLNTDAQQIQETTYDPESKVERSVRSTKEAQQSQQ 299 Query: 300 SQPESAVTVEQNMPHVSDRKVP--LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 Q +SA TVEQN+P + P S + +DK+EEQ+NYEIN+K+ ATT +YK+E+L Sbjct: 300 KQSDSATTVEQNIPQAAPEAGGSAGPESQDKSDKREEQTNYEINSKTTATTRSSYKVEKL 359 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 SIAVVVNKGR+ +++G ADQ K+D+YLAE+ KIV++A GI+++RGD +T+T+MDFLENQ Sbjct: 360 SIAVVVNKGRIAKMVGEPADQTKVDAYLAEMQKIVASAAGIDAKRGDVVTVTAMDFLENQ 419 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG----- 472 L T V MD+LSR+ A +IN+L F+ LV ++GL L R + + + Sbjct: 420 LLEDATGGVRVMDMLSRNLAGIINSLAFVAVAFLVVWMGLRPLVRSVSGNGSSAAFGDAT 479 Query: 473 -EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 E G + P S A LM + + + N V + + +L Sbjct: 480 PEAAGLELPDFAPASGAPGGALMDGFGSDFGFDSTEDLLSLGDDDGNFNRRVKEGPERKL 539 Query: 532 LHMIEINEERFAKILRKWARSEIE 555 M+EINEER AKILRKWA E Sbjct: 540 SRMVEINEERAAKILRKWAIDEAA 563 >gi|116250467|ref|YP_766305.1| flagellar MS-ring protein [Rhizobium leguminosarum bv. viciae 3841] gi|115255115|emb|CAK06189.1| putative flagellar M-ring protein [Rhizobium leguminosarum bv. viciae 3841] Length = 561 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 297/562 (52%), Positives = 395/562 (70%), Gaps = 8/562 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M +L+QL+Q FK+ SLGRTR++IL V + I + +AA FVN P + LYV L+ D+ Sbjct: 1 MNLLNQLVQIFKNFGSLGRTRLMILGGVGALSIAIILAAALFVNKPAQETLYVGLDSPDL 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 N+IS+AL+EANI+F++ +GSSISVP+ M GKAR+ LA +GLP +S+N+GYELFD V S Sbjct: 61 NQISMALAEANINFQVGTDGSSISVPAGMTGKARLMLAERGLP-NSANAGYELFDNVGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEIARTIQSISGI AARVHIVMP++G+FRK +PTASVMIRA Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQSISGITAARVHIVMPEVGNFRKAEQKPTASVMIRAS 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239 + +A +IRHLVA+AVP LD+ DVT+LDS G+LL + +E + L +SL+IVQ +Q Sbjct: 180 ATTGRSAATSIRHLVASAVPGLDVDDVTILDSAGQLLASGDEASNSSLNRSLNIVQNVQQ 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 E+E NI+KALA FLG+DNFRS+V A+LN D QQI+E YDP+SKVERS+R +K+AQ+S+ Sbjct: 240 EVESNIDKALAPFLGMDNFRSSVTADLNTDAQQIQETTYDPESKVERSVRSTKEAQQSQQ 299 Query: 300 SQPESAVTVEQNMPHVSDRKVP--LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 Q +SA TVEQN+P + P S + +DK+EEQ+NYEIN+K+ ATT +YK+E+L Sbjct: 300 KQSDSATTVEQNIPQAAPEAGGSAGPESQDKSDKREEQTNYEINSKTTATTRSSYKVEKL 359 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 SIAVVVNKGR+ +++G ADQ K+D+YLAE+ KIV++A GI+++RGD +T+T+MDFLENQ Sbjct: 360 SIAVVVNKGRIAKMVGEPADQAKVDAYLAEMQKIVASAAGIDAKRGDVVTVTAMDFLENQ 419 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG----E 473 L T V MD+LSR+ A +IN+L F+ +V ++GL L R N A G E Sbjct: 420 LLEDATGGVRVMDMLSRNLAGIINSLAFVAVAFVVVWMGLRPLVRSINGTSAAFGDATPE 479 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 G + P S A LM + + + N V + + +L Sbjct: 480 AAGLELPDFAPASGAPGGALMDGFGSDFGFDSTEDLLSLGDDDGNFNRRVKEGPERKLSR 539 Query: 534 MIEINEERFAKILRKWARSEIE 555 M+EINEER AKILRKWA E Sbjct: 540 MVEINEERAAKILRKWAIDEAA 561 >gi|15964399|ref|NP_384752.1| flagellar MS-ring protein [Sinorhizobium meliloti 1021] gi|307311541|ref|ZP_07591182.1| flagellar M-ring protein FliF [Sinorhizobium meliloti BL225C] gi|307318896|ref|ZP_07598327.1| flagellar M-ring protein FliF [Sinorhizobium meliloti AK83] gi|17380368|sp|O54239|FLIF_RHIME RecName: Full=Flagellar M-ring protein gi|15073576|emb|CAC45218.1| Flagellar M-ring transmembrane protein [Sinorhizobium meliloti 1021] gi|306895310|gb|EFN26065.1| flagellar M-ring protein FliF [Sinorhizobium meliloti AK83] gi|306899558|gb|EFN30187.1| flagellar M-ring protein FliF [Sinorhizobium meliloti BL225C] Length = 557 Score = 503 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 272/554 (49%), Positives = 366/554 (66%), Gaps = 6/554 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + DQ F K+ ++LG+ +++ LA +V I + A +VN P ++ LYV LE SDV Sbjct: 1 MNLFDQFSTFTKNLSNLGQGKLIALAVAGVVAIGFVLGAGIYVNRPSFETLYVGLERSDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +IS+AL+EAN+DF + +G SI VP M GKAR+ LA +GLP SS+N+GYELFD V S Sbjct: 61 TQISIALAEANVDFEVGTDGGSIQVPVGMTGKARLLLAERGLP-SSANAGYELFDNVGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEIARTIQ ISGI AARVHIVMP+ GSFRK PTASVMIRA Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQQISGIAAARVHIVMPERGSFRKAEQTPTASVMIRAS 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239 +A +IRHLVA++VP LD+ DVTVLDSTG+LL + ++ + L +SL +VQ +Q Sbjct: 180 ATVGRSAASSIRHLVASSVPGLDVDDVTVLDSTGQLLASGDDPSNSALNQSLGVVQNVQS 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 ++E I+ ALA FLG+DNFR++V A LN D QQI+E V+DP+S+VERS R+ K+ Q+S Sbjct: 240 DLEKKIDNALAPFLGMDNFRTSVTARLNTDAQQIQETVFDPESRVERSTRVIKEEQKSSQ 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 QP++A TV+QN+P + R +S + +KKEEQ+NYEIN+K+IAT ++Y +ERLSI Sbjct: 300 QQPDNAATVQQNVPQAAPRGGAGQQSSDEAEKKEEQTNYEINSKTIATVKNSYSIERLSI 359 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AVVVN+GRL + G ADQ KID+YL E+ KIVS+A GI+ RGD +T+ +MDF+E QL Sbjct: 360 AVVVNRGRLAAMAGEPADQAKIDAYLQEMQKIVSSAAGIDPGRGDVVTLNAMDFVETQLL 419 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK---KGEVGG 476 + M++L+R+ +INAL F+ LV + G+ L R +GE G Sbjct: 420 DQAVPGPGIMEMLTRNLGGIINALAFVAVAFLVVWFGMRPLARQLGFGGQAGKLEGEAAG 479 Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536 + P + LM D + ++ N V + + RL M+E Sbjct: 480 LELPDFSPAGAGAGGALMEGFGSDFGFDGGDDLLNL-GDEAGFNRRVKEGPERRLARMVE 538 Query: 537 INEERFAKILRKWA 550 I+EER AKILRKWA Sbjct: 539 ISEERAAKILRKWA 552 >gi|222149996|ref|YP_002550953.1| flagellar MS-ring protein [Agrobacterium vitis S4] gi|221736978|gb|ACM37941.1| flagellar M-ring protein [Agrobacterium vitis S4] Length = 568 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 280/560 (50%), Positives = 381/560 (68%), Gaps = 9/560 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + +QLLQ FK+ +SLG T++ LA V +V + L + A FF+N P ++ LYV LE +DV Sbjct: 7 MNLFNQLLQVFKNLSSLGPTKLWTLAGVGVVSVALVIGAAFFINKPAFETLYVGLEATDV 66 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 N+IS+AL+EA + F+ +G SI V + M GKAR+ LA +GLP +S+N+GYELFD V S Sbjct: 67 NQISIALAEAGVGFQTGADGKSIQVQAGMTGKARLLLAERGLP-NSTNAGYELFDNVGSL 125 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEIARTIQ I+GI AARVHIVMPD+G+FR+ +PTASVMIRA Sbjct: 126 GLTSFMQEVTRVRALEGEIARTIQQINGIAAARVHIVMPDVGNFRRGAQKPTASVMIRAG 185 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240 + + KSA +IRHLVA+AVP L++ DVT+LDSTG+LL + + ++L + Q++Q E Sbjct: 186 SDAGRKSAASIRHLVASAVPGLEIDDVTILDSTGQLLASGDETGGAANRNLGVAQSVQQE 245 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 IE NI+KALA FLG+DNFRS+V A+LN D QQI+E VYDP+SKVERS R +K+AQ+S+ Sbjct: 246 IESNIDKALAPFLGMDNFRSSVTAQLNTDQQQIQETVYDPESKVERSTRTTKEAQKSQQR 305 Query: 301 QPESAVTVEQNMPHVSDRKVP-LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 Q ++A TVEQN+P + + P S + DKKEEQ+NYEIN+K+IAT + Y L++LS+ Sbjct: 306 QSDTAATVEQNIPQAAPQAGGAGPESSDQQDKKEEQTNYEINSKTIATVKNGYTLDKLSV 365 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AVVVNK R+ ++G DQ KID+YLAE+ KIV +A G++ +RGD +T+T+MDFLENQL Sbjct: 366 AVVVNKQRIATMVGEPVDQAKIDAYLAEMQKIVKSAAGLDDKRGDVVTLTAMDFLENQLL 425 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + M+ILSR+ A +IN+L FL LV ++G+ + R E G ++ Sbjct: 426 SEAPTGPGVMEILSRNMAGIINSLAFLAVAFLVVWMGIRPMVRSMGGGGTAALEGGSDAV 485 Query: 480 LS------PPPISSAVTTGLMPNDNIALD-SSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 P + + GLM S D+ + + N V + + RL Sbjct: 486 AGLELPDFSPGLDAGAGGGLMDGFGSDFGFDSADDVLALDNDPNGGFNRRVKEGPERRLA 545 Query: 533 HMIEINEERFAKILRKWARS 552 M+EI+EER AKILRKWA Sbjct: 546 RMVEISEERAAKILRKWAVE 565 >gi|327193018|gb|EGE59930.1| flagellar M-ring protein [Rhizobium etli CNPAF512] Length = 563 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 290/564 (51%), Positives = 394/564 (69%), Gaps = 10/564 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M +L+QL+Q FK+ +LGRTR++IL V + I + +AA FVN P + LYV L+ D+ Sbjct: 1 MNLLNQLVQIFKNFGALGRTRLMILGGVGALSIAIILAAALFVNKPAQETLYVGLDAPDL 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 N+IS+AL+EANI+F++ +G+SISVP+ M GKAR+ LA +GLP +S+N+GYELFD V S Sbjct: 61 NQISMALAEANINFQVGTDGASISVPAGMTGKARLMLAERGLP-NSANAGYELFDNVGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEIARTIQSISGI AARVHIVMP++G+FRK +PTASVMIRA Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQSISGITAARVHIVMPEVGNFRKAEQKPTASVMIRAS 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239 + +A +IRHLVA+AVP LD+ DVT+LDS G+LL + +E + L +SL+IVQ +Q Sbjct: 180 AATGRSAATSIRHLVASAVPGLDVDDVTILDSAGQLLASGDEASNSSLNRSLNIVQNVQQ 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 E+E NI+KALA FLG+DNFRS+V A+LN D QQI+E YDP+SKVERS+R +K+AQ+S+ Sbjct: 240 EVESNIDKALAPFLGMDNFRSSVTADLNTDAQQIQETTYDPESKVERSVRSTKEAQQSQQ 299 Query: 300 SQPESAVTVEQNMPHVSD--RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 Q ++A TVEQN+P + P S + +DK+EEQ+NYEIN+K+ ATT ++YK+E+L Sbjct: 300 KQSDNATTVEQNIPQAAPDAGGASGPESQDKSDKREEQTNYEINSKTTATTRNSYKVEKL 359 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 SIAVVVNKGR+ +++G ADQ K+D+YLAE+ KIV++A GI+++RGD +T+T+MDFLENQ Sbjct: 360 SIAVVVNKGRIAKMVGEPADQAKVDAYLAEMQKIVASAAGIDAKRGDVVTVTAMDFLENQ 419 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA------KK 471 L T V MD+LSR+ A +IN+L F+ +V ++GL L R + A Sbjct: 420 LLEDATGGVRVMDMLSRNLAGIINSLAFVAVAFVVVWMGLRPLVRSVTGNGASAVLGDAT 479 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 E G + P A LM + + + N V + + +L Sbjct: 480 PEAAGLELPDFAPAVGAPGGALMDGFGSDFGFDSTEDLLSLGDDDGNFNRRVKEGPERKL 539 Query: 532 LHMIEINEERFAKILRKWARSEIE 555 M+EINEER AKILRKWA + Sbjct: 540 ARMVEINEERAAKILRKWAIDDAA 563 >gi|190890348|ref|YP_001976890.1| flagellar M-ring protein [Rhizobium etli CIAT 652] gi|190695627|gb|ACE89712.1| flagellar M-ring protein [Rhizobium etli CIAT 652] Length = 563 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 290/564 (51%), Positives = 395/564 (70%), Gaps = 10/564 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M +L+QL+Q FK+ +LGRTR++IL V + I + +AA FVN P + LYV L+ D+ Sbjct: 1 MNLLNQLVQIFKNFGALGRTRLMILGGVGALSIAIILAAALFVNKPAQETLYVGLDAPDL 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 N+IS+AL+EANI+F++ +G+SISVP+ M GKAR+ LA +GLP +S+N+GYELFD V S Sbjct: 61 NQISMALAEANINFQVGTDGASISVPAGMTGKARLMLAERGLP-NSANAGYELFDNVGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEIARTIQSISGI AARVHIVMP++G+FRK +PTASVMIRA Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQSISGITAARVHIVMPEVGNFRKAEQKPTASVMIRAS 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239 + +A +IRHLVA+AVP LD+ DVT+LDS G+LL + +E + L +SL+IVQ +Q Sbjct: 180 AATGRSAATSIRHLVASAVPGLDVDDVTILDSAGQLLASGDEASNSSLNRSLNIVQNVQQ 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 E+E NI+KALA FLG+DNFRS+V A+LN D QQI+E YDP+SKVERS+R +K+AQ+S+ Sbjct: 240 EVESNIDKALAPFLGMDNFRSSVTADLNTDAQQIQETTYDPESKVERSVRSTKEAQQSQQ 299 Query: 300 SQPESAVTVEQNMPHVSD--RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 Q ++A TVEQN+P + P S + +DK+EEQ+NYEIN+++ ATT ++YK+E+L Sbjct: 300 KQSDNATTVEQNIPQAAPDAGGASGPESQDKSDKREEQTNYEINSRTTATTRNSYKVEKL 359 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 SIAVVVNKGR+ +++G ADQ KID+YLAE+ KIV++A GI+++RGD +T+T+MDFLENQ Sbjct: 360 SIAVVVNKGRIAKMVGEPADQAKIDAYLAEMQKIVASAAGIDAKRGDVVTVTAMDFLENQ 419 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA------KK 471 L T V MD+LSR+ A +IN+L F+ +V ++GL L R + + A Sbjct: 420 LLEDATGGVRVMDMLSRNLAGIINSLAFVAVAFVVVWMGLRPLVRSVSGNGASAVLGDAT 479 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 E G + P A LM + + + N V + + +L Sbjct: 480 PEAAGLELPDFAPAVGAPGGALMDGFGSDFGFDSTEDLLSLGDDDGNFNRRVKEGPERKL 539 Query: 532 LHMIEINEERFAKILRKWARSEIE 555 M+EINEER AKILRKWA + Sbjct: 540 ARMVEINEERAAKILRKWAIDDAA 563 >gi|2916780|emb|CAA11947.1| flagellar basal-body MS-ring protein [Sinorhizobium meliloti] Length = 557 Score = 498 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 270/554 (48%), Positives = 364/554 (65%), Gaps = 6/554 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + DQ F K+ ++LG+ +++ LA +V I + A +VN ++ LYV LE SDV Sbjct: 1 MNLFDQFSTFTKNLSNLGQGKLIALAVAGVVAIGFVLGAGIYVNRRSFETLYVGLERSDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +IS+AL+EAN+DF + +G SI VP M GKAR+ LA +GLP SS+N+GYELFD V S Sbjct: 61 TQISIALAEANVDFEVGTDGGSIQVPVGMTGKARLLLAERGLP-SSANAGYELFDNVGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEI RTIQ ISGI AARVHIVMP+ GSFRK PTASVMIRA Sbjct: 120 GLTSFMQEVTRVRALEGEIGRTIQQISGIAAARVHIVMPERGSFRKAEQTPTASVMIRAS 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239 +A +IRHLVA++VP LD+ DVTVLDSTG+LL + ++ + L +SL +VQ +Q Sbjct: 180 ATVGRSAASSIRHLVASSVPGLDVDDVTVLDSTGQLLASGDDPSNSALNQSLGVVQNVQS 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 ++E I+ ALA FLG+DNFR++V A LN D QQI+E V+DP+S+VERS R+ K+ Q+S Sbjct: 240 DLEKKIDNALAPFLGMDNFRTSVTARLNTDAQQIQETVFDPESRVERSTRVIKEEQKSSQ 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 QP++A TV+QN+P + R +S + +KKEEQ+NYEIN+K+IAT ++Y +ERLSI Sbjct: 300 QQPDNAATVQQNVPQAAPRGGAGQQSSDEAEKKEEQTNYEINSKTIATVKNSYSIERLSI 359 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AVVVN+GRL + G ADQ KID+YL E+ KIVS+A GI+ RGD +T+ +MDF+E QL Sbjct: 360 AVVVNRGRLAAMAGEPADQAKIDAYLQEMQKIVSSAAGIDPGRGDVVTLNAMDFVETQLL 419 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK---KGEVGG 476 + M++L+R+ +INAL F+ LV + G+ L R +GE G Sbjct: 420 DQAVPGPGIMEMLTRNLGGIINALAFVAVAFLVVWFGMRPLARQLGFGGQAGKLEGEAAG 479 Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536 + P + LM D + ++ N V + + RL M+E Sbjct: 480 LELPDFSPAGAGAGGALMEGFGSDFGFDGGDDLLNL-GDEAGFNRRVKEGPERRLARMVE 538 Query: 537 INEERFAKILRKWA 550 I+EER AKILRKWA Sbjct: 539 ISEERAAKILRKWA 552 >gi|150395469|ref|YP_001325936.1| flagellar MS-ring protein [Sinorhizobium medicae WSM419] gi|150026984|gb|ABR59101.1| flagellar M-ring protein FliF [Sinorhizobium medicae WSM419] Length = 557 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 269/554 (48%), Positives = 364/554 (65%), Gaps = 6/554 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + DQ F K+ ++LG+ +++ LA +V I + A +VN P ++ LYV LE SDV Sbjct: 1 MNLFDQFSTFTKNLSNLGQGKLIALAVAGIVAIGFVLGAGVYVNRPSFETLYVGLERSDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +IS+AL+EAN+DF + +G SI VP M GKAR+ LA +GLP SS+N+GYELFD V S Sbjct: 61 TQISIALAEANVDFEVGTDGGSIQVPVGMTGKARLLLAERGLP-SSANAGYELFDNVGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEIARTIQ ISGI AARVHIVMP+ GSFRK PTASVMIRA Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQQISGIAAARVHIVMPERGSFRKAEQTPTASVMIRAS 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239 +A +IRHLVA++VP LD+ DVTVLDSTG+LL + ++ + L +SL +VQ +Q Sbjct: 180 ATVGRSAAASIRHLVASSVPGLDVDDVTVLDSTGQLLASGDDPANSALNQSLGVVQNVQT 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 ++E I+ ALA FLG+DNFR++V A LN D QQI+E V+DP+S+VERS R+ K+ Q+S Sbjct: 240 DLEKKIDNALAPFLGMDNFRTSVTARLNTDAQQIQETVFDPESRVERSTRVIKEEQKSSQ 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 QP++A TV+QN+P + +S + KKEEQ+NYEIN+K+IAT ++Y +ERLSI Sbjct: 300 QQPDNAATVQQNVPQAAPTGGAGQQSSDEAAKKEEQTNYEINSKTIATVKNSYSIERLSI 359 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AVVVN+GRL + G ADQ KID+YL ++ KIV++A GI+ RGD +T+ +MDF+E QL Sbjct: 360 AVVVNRGRLAAMAGEPADQAKIDAYLVQMQKIVASAAGIDPGRGDVVTLNAMDFVETQLL 419 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK---KGEVGG 476 + M++L+R+ +INAL F+ LV + G+ L R GE G Sbjct: 420 DQAVPGPGMMEVLTRNIGGIINALAFVAVAFLVVWFGMRPLARQMGFGGQSGQLAGEAAG 479 Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536 + P ++ LM D + ++ N V + + RL M+E Sbjct: 480 LELPDFSPAAAGAGGALMEGFGSDFGFDGGDDLLNL-GDEAGFNRRVKEGPERRLARMVE 538 Query: 537 INEERFAKILRKWA 550 I+EER AKILRKWA Sbjct: 539 ISEERAAKILRKWA 552 >gi|325291912|ref|YP_004277776.1| flagellar MS-ring protein [Agrobacterium sp. H13-3] gi|325059765|gb|ADY63456.1| flagellar MS-ring protein [Agrobacterium sp. H13-3] Length = 560 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 271/558 (48%), Positives = 385/558 (68%), Gaps = 7/558 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M +L+Q+ Q K+ +LG+TR+L+L V ++ + + +AA +VN P Y+ LYV LE SD+ Sbjct: 1 MNLLNQIPQVLKNFAALGQTRLLMLGGVGILSMAIILAAALYVNRPAYETLYVGLEKSDL 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 N+IS+AL+EA +DF++ +G+S+ VP + KAR+ LA +GLP S+N+GYELFD V S Sbjct: 61 NKISIALAEAGLDFQVGTDGASLQVPVGLTSKARLLLAERGLP-DSANAGYELFDNVGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEI+R+IQ I GI AARVHIVMPD+G+FR+ +PTASVMIRA Sbjct: 120 GLTSFMQEVTRVRALEGEISRSIQQIDGIAAARVHIVMPDVGNFRRGEQKPTASVMIRAN 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-GKSLSIVQAIQH 239 + K++ +IRHLVA+AVP L++ DVT+LDSTG+LL + + N +SL++ Q +Q Sbjct: 180 ATAGRKASASIRHLVASAVPGLEVDDVTLLDSTGQLLASGDDVTNAAMNRSLTLAQNVQQ 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 EI NI+KALA FLG+DNFRS+V A+LN D++QI+E VYDP+S+VERS+R K+ Q+S+ Sbjct: 240 EITTNIDKALAPFLGMDNFRSSVTAQLNTDSRQIQETVYDPESRVERSVRTVKEDQKSQE 299 Query: 300 SQPESAVTVEQNMPHVSDRK-VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 +QP++A TVEQN+P + + P+S + + KKEEQ+NYEIN+K++AT + Y +E++S Sbjct: 300 TQPDTAATVEQNVPQAAPQGGAGGPQSSDQSAKKEEQTNYEINSKTVATVKNGYTVEKIS 359 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 +AVVVNKGR+ +++G DQ KID+YLAE+ KIV++A G++S RGD +T+T+MDFLE QL Sbjct: 360 VAVVVNKGRIAKMVGEPVDQAKIDAYLAEMQKIVTSAAGVSSDRGDIVTLTAMDFLETQL 419 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG----EV 474 + M++LSR+ A +IN+L F+ LV +LG+ L R + A G E Sbjct: 420 LDEAASGPGIMEVLSRNSAGIINSLAFVAVAFLVVWLGVRPLVRTVTGNGAAAGQISQET 479 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 G + P A GLM + D + + N V + + RL M Sbjct: 480 AGLELPDFSPGMDAGAGGLMEGFGADFGFDSTDDLLAGGDSEGTFNRRVREGPERRLSRM 539 Query: 535 IEINEERFAKILRKWARS 552 +EI+EER AKILRKWA Sbjct: 540 VEISEERAAKILRKWAVE 557 >gi|227820842|ref|YP_002824812.1| flagellar MS-ring protein [Sinorhizobium fredii NGR234] gi|227339841|gb|ACP24059.1| flagellar M-ring protein FliF [Sinorhizobium fredii NGR234] Length = 559 Score = 495 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 270/554 (48%), Positives = 372/554 (67%), Gaps = 6/554 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + DQ F K+ ++LG+++++ LA +V I + A +VN P Y+ LYV LE SDV Sbjct: 1 MNLFDQFSTFTKNLSNLGQSKLIALAVAGIVAIGFVLGAAIYVNKPAYETLYVGLERSDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +IS+AL+EAN+DF + +G SI VP M GKAR+ LA +GLP SS+N+GYELFD V S Sbjct: 61 TQISIALAEANLDFEVGSDGGSIQVPVGMTGKARLLLAERGLP-SSANAGYELFDNVGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEIARTIQ ISGI AARVHIVMP+ GSFRK PTASVMIRA Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQQISGIAAARVHIVMPERGSFRKAEQTPTASVMIRAS 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239 +A +IRHLVA++VP LD+ DVT+LDSTG+LL + ++ + L +SL +VQ +Q Sbjct: 180 ATVGRGAASSIRHLVASSVPGLDIDDVTILDSTGQLLASGDDPANSALNQSLGVVQNVQT 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 ++E I+ ALA FLG+DNFR++V A LN D QQI+E V+DP+S+VERS R+ K+ Q+S Sbjct: 240 DLEKKIDNALAPFLGMDNFRTSVTASLNTDAQQIQETVFDPESRVERSTRVIKEEQKSSQ 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 QP++A TV+QN+P + R +S + KKEEQ+NYEIN+K+IAT ++Y +ERLSI Sbjct: 300 QQPDNAATVQQNVPQAAPRGGAGQQSNDEAAKKEEQTNYEINSKTIATVKNSYSIERLSI 359 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AVVVN+GRL ++G ADQ KID+YL ++ KIV++A G+++ RGD +T+ +MDF+E QL Sbjct: 360 AVVVNRGRLAAMVGEGADQAKIDAYLQDMQKIVASAAGVDTNRGDVVTLNAMDFVETQLL 419 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK---KGEVGG 476 + M++L+R+ +IN+L F++ LV +LG+ L R +GE G Sbjct: 420 DQAVAGPGVMEMLTRNLGGIINSLAFILVAFLVVWLGMRPLARQMGFGGQSGHLEGEGAG 479 Query: 477 KSILSPPP-ISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 + P +SA LM + D + + + N V + + RL M+ Sbjct: 480 LELPDFSPAGASAAGGALMEGFGSDFGFDSTDDLLNISDEGNGFNRRVKEGPERRLARMV 539 Query: 536 EINEERFAKILRKW 549 EI+EER AKILRKW Sbjct: 540 EISEERAAKILRKW 553 >gi|86356297|ref|YP_468189.1| flagellar MS-ring protein [Rhizobium etli CFN 42] gi|86280399|gb|ABC89462.1| flagellar M-ring protein [Rhizobium etli CFN 42] Length = 563 Score = 493 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 291/564 (51%), Positives = 398/564 (70%), Gaps = 10/564 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M +L+QL+Q FK+ +LGRTR++IL V V I + +AA FVN P + LYV L+ D+ Sbjct: 1 MNLLNQLVQIFKNFGALGRTRLMILGGVGSVSIAIILAAALFVNKPAQETLYVGLDAPDL 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 N+IS+AL+EANI+F++ +GSSI+VP+ M GKAR+ LA +GLP +S+N+GYELFD V S Sbjct: 61 NQISMALAEANINFQVGTDGSSITVPAGMTGKARLMLAERGLP-NSANAGYELFDNVGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEIARTIQSISGI AARVHIVMP++G+FRK +PTASVMIRA Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQSISGITAARVHIVMPEVGNFRKAEQKPTASVMIRAS 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239 + +A +IRHLVA+AVP LD+ DVT+LDS G+LL + +E + L +SL+IVQ +Q Sbjct: 180 AATGRSAATSIRHLVASAVPGLDVDDVTILDSAGQLLASGDEASNSSLNRSLNIVQNVQQ 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 E+E NI+KALA FLG+DNFRS+V A+LN D QQI+E VYDP+SKVERS+R +K+AQ+S+ Sbjct: 240 EVESNIDKALAPFLGMDNFRSSVTADLNTDAQQIQETVYDPESKVERSVRSTKEAQQSQQ 299 Query: 300 SQPESAVTVEQNMPHVSDRKVP--LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 Q ++A TVEQN+P + P S + +DK+EEQ+NYEIN+K+ ATT ++Y++E+L Sbjct: 300 RQSDNATTVEQNIPQAAPDAGGSGGPESQDKSDKREEQTNYEINSKTTATTRNSYQVEKL 359 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 SIAVVVNKGR+ +++G ADQ KID+YLAE++KIV++A GI+++RGD +T+T+MDFLENQ Sbjct: 360 SIAVVVNKGRIAKMVGEPADQAKIDAYLAEMHKIVASAAGIDAKRGDVVTVTAMDFLENQ 419 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA------KK 471 L T V MD+LSR+ A +IN+L F+ +V ++GL L R + + + Sbjct: 420 LLEDATGGVRVMDMLSRNLAGIINSLAFVAVAFVVVWMGLRPLVRSVSGNGSSSVLGDAT 479 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 E G + P + A LM + + + N V + + +L Sbjct: 480 PEAAGLELPDFAPAAGAAGGALMDGFGSDFGFDSTEDLLSLGDDDGNFNRRVKEGPERKL 539 Query: 532 LHMIEINEERFAKILRKWARSEIE 555 M+EINEER AKILRKWA + Sbjct: 540 ARMVEINEERAAKILRKWAIDDAA 563 >gi|209547913|ref|YP_002279830.1| flagellar MS-ring protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533669|gb|ACI53604.1| flagellar M-ring protein FliF [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 563 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 293/564 (51%), Positives = 397/564 (70%), Gaps = 10/564 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M +L+QL+Q FK+ SLGRTR++IL V V I + +AA FVN P + LYV L+ D+ Sbjct: 1 MNLLNQLVQIFKNFGSLGRTRLMILGGVGAVSIAIVLAAALFVNKPAQETLYVGLDSPDL 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 N+IS+AL+EAN+DF++ +G+SISVP+ M GKAR+ LA +GLP +S+N+GYELFD V S Sbjct: 61 NQISMALAEANVDFQVGTDGTSISVPAGMTGKARLLLAERGLP-NSANAGYELFDNVGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEIARTIQSISGI AARVHIVMP++G+FRK +PTASVMIRA Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQSISGITAARVHIVMPEVGNFRKAEQKPTASVMIRAS 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239 + +A +IRHLVA+AVP LD+ DVT+LDS G+LL + +E + L +SL+IVQ +Q Sbjct: 180 ATTGRSAATSIRHLVASAVPGLDVDDVTILDSAGQLLASGDEASNSSLNRSLNIVQNVQQ 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 E+E NI+KALA FLG+DNFRS+V A+LN D QQI+E YDP+SKVERS+R +K+AQ+S+ Sbjct: 240 EVESNIDKALAPFLGMDNFRSSVTADLNTDAQQIQETTYDPESKVERSVRSTKEAQQSQQ 299 Query: 300 SQPESAVTVEQNMPHVSDRKVP--LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 Q +SA TVEQN+P + P S + +DK+EEQ+NYEIN+++ ATT ++YK+E+L Sbjct: 300 KQSDSATTVEQNIPQAAPEAGGSAGPESQDKSDKREEQTNYEINSRTTATTRNSYKVEKL 359 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 SIAVVVNKGR+ +++G ADQ KID+YLAE+ KIV++A+GI+++RGD +T+T+MDFLENQ Sbjct: 360 SIAVVVNKGRIAKMVGEPADQAKIDAYLAEMQKIVASASGIDAKRGDVVTVTAMDFLENQ 419 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA------KK 471 L T V MD+LSR+ A +IN+L F+ +V ++GL L R + + + Sbjct: 420 LLEDATGGVRVMDMLSRNLAGIINSLAFVAVAFVVVWMGLRPLVRSVSGNGSSSVLGDAT 479 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 E G + P + A LM + + + N V + + +L Sbjct: 480 PEAAGLELPDFAPAAGASGGALMDGFGSDFGFDSTEDLLSLGDDDGNFNRRVKEGPERKL 539 Query: 532 LHMIEINEERFAKILRKWARSEIE 555 M+EINEER AKILRKWA E Sbjct: 540 SRMVEINEERAAKILRKWAIDEAA 563 >gi|222084850|ref|YP_002543379.1| flagellar M-ring protein [Agrobacterium radiobacter K84] gi|221722298|gb|ACM25454.1| flagellar M-ring protein [Agrobacterium radiobacter K84] Length = 559 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 270/555 (48%), Positives = 385/555 (69%), Gaps = 6/555 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M +L+QL+ F++ +LGRTR+L LA V ++ + L + A +VN P + LYV L+ +D+ Sbjct: 1 MNLLNQLVPLFRNLQNLGRTRLLTLAGVGILSVALVLFAALYVNKPAQETLYVGLDATDL 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 N+IS+AL+EA I+F++ +G+S++VP+ M GKAR LA +GLP +S+N+GYELFD V S Sbjct: 61 NQISIALAEAKINFQVGADGTSLTVPTGMTGKARALLAERGLP-NSTNAGYELFDNVGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEI RTI SISGI AARVHIVM D+G+FRK +PTASVMIRA Sbjct: 120 GLTSFMQEVTRVRALEGEIGRTITSISGISAARVHIVMQDVGNFRKADQKPTASVMIRAN 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQH 239 + K+A+AIRHLVA+AVP L++ DVT+LDSTG+LL + + + N L ++L IVQ +Q Sbjct: 180 AEAARKAAQAIRHLVASAVPGLEVDDVTILDSTGQLLASGDDQSNGALNRNLGIVQNVQG 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 EI NI+KALA FLG+DNFRS+V A+LN D+QQ++E YDP+SKVERS+R +K+AQ+S+ Sbjct: 240 EIASNIDKALAPFLGMDNFRSSVTAQLNTDSQQVQETTYDPESKVERSVRTTKEAQKSQQ 299 Query: 300 SQPESAVTVEQNMPHVSDRKVP-LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 Q ++A TVEQN+P + + P S + TDK+EEQ+NYEIN+K+ AT ++Y++E+LS Sbjct: 300 RQSDTAATVEQNIPQAAPQAGGNGPTSNDQTDKREEQTNYEINSKTTATVRNSYRIEKLS 359 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 +AVVVN+GR+ +++G+ AD K+D+Y+AE+ KIV+ A G++ RGD +T+ +MDFL+ QL Sbjct: 360 VAVVVNRGRIAQMVGQPADPAKVDAYIAEMQKIVATAAGLDPSRGDVVTVNAMDFLDTQL 419 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH--NIDDAKKGEVGG 476 + ++ MD+LSR+ A +IN+L F+ +L+ +LG L R + + G Sbjct: 420 LDDNASGLNIMDVLSRNIAGIINSLAFVAVAVLIIWLGFRPLIRSLGGGANGTALPDAAG 479 Query: 477 KSILSPPPIS-SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 + P + LM + D S N V + + RL M+ Sbjct: 480 LELPDFAPGAVGGPGAALMDGFGSDFGFDSTDDLLTMGEDNSTFNRRVKEGPERRLSRMV 539 Query: 536 EINEERFAKILRKWA 550 EI+EER AKILRKWA Sbjct: 540 EISEERAAKILRKWA 554 >gi|15887871|ref|NP_353552.1| flagellar MS-ring protein [Agrobacterium tumefaciens str. C58] gi|15155457|gb|AAK86337.1| flagellar M-ring protein [Agrobacterium tumefaciens str. C58] Length = 566 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 266/558 (47%), Positives = 383/558 (68%), Gaps = 7/558 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M +L+Q+ Q K+ +LG+TR+L+L V ++ + + +AA +VN P Y+ LYV LE SD+ Sbjct: 7 MNLLNQIPQVLKNVAALGQTRLLMLGGVGVLSMAIILAAALYVNRPAYETLYVGLEKSDL 66 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 N+IS+AL+E+ +DF++ +GSS+ VP + KAR+ LA +GLP S+N+GYELFD V S Sbjct: 67 NKISIALAESGLDFQVGTDGSSLQVPVGLTSKARLLLAERGLP-DSANAGYELFDNVGSL 125 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEI R+IQ I G+ AARVHIV+PD+G+FR+ +PTASVMIRA Sbjct: 126 GLTSFMQEVTRVRALEGEIGRSIQQIDGVSAARVHIVLPDVGNFRRGEQKPTASVMIRAS 185 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-GKSLSIVQAIQH 239 + K++ +IRHLVA+AVP L++ DVT+LDSTG+LL + + N +SL++ Q +Q Sbjct: 186 ASAGRKASASIRHLVASAVPGLEVDDVTLLDSTGQLLASGDDVTNAAMNRSLTLAQNVQQ 245 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 EI NI+KALA FLG+DNFRS+V A++N D++Q++E VYDP+S+VERS+R K+ Q+S+ Sbjct: 246 EITTNIDKALAPFLGIDNFRSSVTAQINTDSRQVQETVYDPESRVERSVRTVKEDQKSQE 305 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPR-SLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 +QP++A TVEQN+P + + S + + KKEEQ+NYEIN+K++AT + Y LE++S Sbjct: 306 TQPDTAATVEQNVPQAAPQGGGGGPQSSDQSAKKEEQTNYEINSKTVATVKNGYTLEKIS 365 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 +AVVVNKGR+ +++G ADQ KID+YLAE+ KIV++A GI+S RGD +T+T+MDFLE QL Sbjct: 366 VAVVVNKGRIAKMVGEPADQAKIDAYLAEMQKIVTSAAGISSDRGDIVTLTAMDFLETQL 425 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV---- 474 + M++LSR+ A +IN+L F+ LV +LG+ L R + + ++ Sbjct: 426 LDEAASGPGVMEVLSRNSAGIINSLAFVAVAFLVVWLGVRPLVRTVTANGSAAAQLSQES 485 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 G + P A GLM + D + + N V + + RL M Sbjct: 486 AGLELPDFSPGMEAGAGGLMEGFGADFGFDSTDDLLAGGDGEGTFNRRVREGPERRLSRM 545 Query: 535 IEINEERFAKILRKWARS 552 +EI+EER AKILRKWA Sbjct: 546 VEISEERAAKILRKWAVE 563 >gi|256059797|ref|ZP_05449992.1| flagellar MS-ring protein [Brucella neotomae 5K33] gi|261323777|ref|ZP_05962974.1| flagellar M-ring protein FliF [Brucella neotomae 5K33] gi|261299757|gb|EEY03254.1| flagellar M-ring protein FliF [Brucella neotomae 5K33] Length = 580 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 217/563 (38%), Positives = 328/563 (58%), Gaps = 9/563 (1%) Query: 4 LDQLLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 QL++ K LG ++++L V + + ++ P Y+ LYV L DVNR Sbjct: 10 FQQLIEQLKGTLGKLGARKLIVLGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVNR 69 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S GL Sbjct: 70 MGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGL 128 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 TSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 129 TSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGG 188 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEI 241 +SA++IR LVAAAVP+LD VTVLD+ G LL +A E + S+ Q + + Sbjct: 189 FSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASHV 248 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S ++ Sbjct: 249 DDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNNR 308 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 ++A VEQN+P + S E TD++EE +NYE+N+K+++T D Y ++RLSIAV Sbjct: 309 NDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIAV 368 Query: 362 VVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 V+++ RL + G + +D + +I +V+ A G+N+ RGD I +T+++FL+ + Sbjct: 369 VIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGAD 428 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA--KKGEVGGKS 478 V + D L R + NAL L L+ + GL L R N+ A + Sbjct: 429 MEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAGE 488 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 + +P I A + G I ++ D S S + + + LRL MIE++ Sbjct: 489 VATPNFIGGAESVGEGVQAVIGGPAAYADQMKTS---LSDLRQRMRMPAKLRLEQMIEMD 545 Query: 539 EERFAKILRKWARSEIEDRYTQH 561 EER A +L++W R Sbjct: 546 EERVAAVLKQWIHETASGREADP 568 >gi|260568707|ref|ZP_05839176.1| flagellar M-ring protein FliF [Brucella suis bv. 4 str. 40] gi|260155372|gb|EEW90453.1| flagellar M-ring protein FliF [Brucella suis bv. 4 str. 40] Length = 580 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 217/563 (38%), Positives = 327/563 (58%), Gaps = 9/563 (1%) Query: 4 LDQLLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 QL++ K LG +++ L V + + ++ P Y+ LYV L DVNR Sbjct: 10 FQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYMSIYLGRPSYETLYVGLSRDDVNR 69 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S GL Sbjct: 70 MGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGL 128 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 TSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 129 TSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGG 188 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEI 241 +SA++IR LVAAAVP+LD VTVLD+ G LL +A E + S+ Q + + Sbjct: 189 FSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASHV 248 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S ++ Sbjct: 249 DDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNNR 308 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 ++A VEQN+P + S E TD++EE +NYE+N+K+++T D Y ++RLSIAV Sbjct: 309 NDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIAV 368 Query: 362 VVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 V+++ RL + G + +D + +I +V+ A G+N+ RGD I +T+++FL+ + Sbjct: 369 VIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGAD 428 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA--KKGEVGGKS 478 V + D L R + NAL L L+ + GL L R N+ A + Sbjct: 429 MEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAGE 488 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 + +P I A + G I ++ D S S + + + LRL MIE++ Sbjct: 489 VATPNFIGGAESVGEGVQAVIGGPAAYADQMKTS---LSDLRQRMRMPAKLRLEQMIEMD 545 Query: 539 EERFAKILRKWARSEIEDRYTQH 561 EER A +L++W R Sbjct: 546 EERVAAVLKQWIHETASGREADP 568 >gi|261219820|ref|ZP_05934101.1| flagellar M-ring protein FliF [Brucella ceti B1/94] gi|265996839|ref|ZP_06109396.1| flagellar M-ring protein FliF [Brucella ceti M490/95/1] gi|260918404|gb|EEX85057.1| flagellar M-ring protein FliF [Brucella ceti B1/94] gi|262551136|gb|EEZ07297.1| flagellar M-ring protein FliF [Brucella ceti M490/95/1] Length = 580 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 217/563 (38%), Positives = 326/563 (57%), Gaps = 9/563 (1%) Query: 4 LDQLLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 QL++ K LG +++ L V + + ++ P Y+ LYV L DVNR Sbjct: 10 FQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVNR 69 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S GL Sbjct: 70 MGRALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGL 128 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 TSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 129 TSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGG 188 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEI 241 +SA++IR LVAAAVP+LD VTVLD+ G LL +A E + S+ Q + + Sbjct: 189 FSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASHV 248 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S ++ Sbjct: 249 DDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNNR 308 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 ++A VEQN+P + S E TD++EE +NYE+N+K+++T D Y ++RLSIAV Sbjct: 309 NDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIAV 368 Query: 362 VVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 V+++ RL + G + +D + +I +V+ A G+N+ RGD I +T+++FL+ + Sbjct: 369 VIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGAD 428 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA--KKGEVGGKS 478 V + D L R + NAL L L+ + GL L R N+ A + Sbjct: 429 MEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAGE 488 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 + +P I A + G I ++ D S S + + + LRL MIE++ Sbjct: 489 VATPNFIGGAESVGEGVQAVIGGPAAYADQMKTS---LSDLRQRMRMPAKLRLEQMIEMD 545 Query: 539 EERFAKILRKWARSEIEDRYTQH 561 EER A +L++W R Sbjct: 546 EERVAAVLKQWIHETASGREADP 568 >gi|23500860|ref|NP_700300.1| flagellar MS-ring protein [Brucella suis 1330] gi|83269941|ref|YP_419232.1| flagellar MS-ring protein [Brucella melitensis biovar Abortus 2308] gi|225628435|ref|ZP_03786469.1| flagellar M-ring protein FliF [Brucella ceti str. Cudo] gi|237817511|ref|ZP_04596501.1| flagellar M-ring protein FliF [Brucella abortus str. 2308 A] gi|256015905|ref|YP_003105914.1| flagellar M-ring protein FliF [Brucella microti CCM 4915] gi|260166802|ref|ZP_05753613.1| flagellar MS-ring protein [Brucella sp. F5/99] gi|260544149|ref|ZP_05819970.1| flagellar M-ring protein FliF [Brucella abortus NCTC 8038] gi|260757235|ref|ZP_05869583.1| flagellar M-ring protein FliF [Brucella abortus bv. 6 str. 870] gi|260759400|ref|ZP_05871748.1| flagellar M-ring protein FliF [Brucella abortus bv. 4 str. 292] gi|260762643|ref|ZP_05874975.1| flagellar M-ring protein FliF [Brucella abortus bv. 2 str. 86/8/59] gi|260883039|ref|ZP_05894653.1| flagellar M-ring protein FliF [Brucella abortus bv. 9 str. C68] gi|261318817|ref|ZP_05958014.1| flagellar M-ring protein FliF [Brucella pinnipedialis B2/94] gi|261749710|ref|ZP_05993419.1| flagellar M-ring protein [Brucella suis bv. 5 str. 513] gi|261752953|ref|ZP_05996662.1| flagellar M-ring protein FliF [Brucella suis bv. 3 str. 686] gi|261756180|ref|ZP_05999889.1| flagellar M-ring protein FliF [Brucella sp. F5/99] gi|265987176|ref|ZP_06099733.1| flagellar M-ring protein FliF [Brucella pinnipedialis M292/94/1] gi|294852976|ref|ZP_06793648.1| flagellar M-ring protein FliF [Brucella sp. NVSL 07-0026] gi|297250144|ref|ZP_06933845.1| flagellar M-ring protein FliF [Brucella abortus bv. 5 str. B3196] gi|38257618|sp|Q8FUS3|FLIF_BRUSU RecName: Full=Flagellar M-ring protein FliF gi|23464525|gb|AAN34305.1| flagellar M-ring protein FliF [Brucella suis 1330] gi|82940215|emb|CAJ13271.1| Flagellar FliF M-ring protein:Type III secretion system outer membrane K protein:Secretory protein YscJ/FliF [Brucella melitensis biovar Abortus 2308] gi|225616281|gb|EEH13329.1| flagellar M-ring protein FliF [Brucella ceti str. Cudo] gi|237787266|gb|EEP61484.1| flagellar M-ring protein FliF [Brucella abortus str. 2308 A] gi|255998565|gb|ACU50252.1| flagellar M-ring protein FliF [Brucella microti CCM 4915] gi|260097420|gb|EEW81294.1| flagellar M-ring protein FliF [Brucella abortus NCTC 8038] gi|260669718|gb|EEX56658.1| flagellar M-ring protein FliF [Brucella abortus bv. 4 str. 292] gi|260673064|gb|EEX59885.1| flagellar M-ring protein FliF [Brucella abortus bv. 2 str. 86/8/59] gi|260677343|gb|EEX64164.1| flagellar M-ring protein FliF [Brucella abortus bv. 6 str. 870] gi|260872567|gb|EEX79636.1| flagellar M-ring protein FliF [Brucella abortus bv. 9 str. C68] gi|261298040|gb|EEY01537.1| flagellar M-ring protein FliF [Brucella pinnipedialis B2/94] gi|261736164|gb|EEY24160.1| flagellar M-ring protein FliF [Brucella sp. F5/99] gi|261739463|gb|EEY27389.1| flagellar M-ring protein [Brucella suis bv. 5 str. 513] gi|261742706|gb|EEY30632.1| flagellar M-ring protein FliF [Brucella suis bv. 3 str. 686] gi|264659373|gb|EEZ29634.1| flagellar M-ring protein FliF [Brucella pinnipedialis M292/94/1] gi|294818631|gb|EFG35631.1| flagellar M-ring protein FliF [Brucella sp. NVSL 07-0026] gi|297174013|gb|EFH33377.1| flagellar M-ring protein FliF [Brucella abortus bv. 5 str. B3196] Length = 580 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 217/563 (38%), Positives = 327/563 (58%), Gaps = 9/563 (1%) Query: 4 LDQLLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 QL++ K LG +++ L V + + ++ P Y+ LYV L DVNR Sbjct: 10 FQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVNR 69 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S GL Sbjct: 70 MGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGL 128 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 TSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 129 TSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGG 188 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEI 241 +SA++IR LVAAAVP+LD VTVLD+ G LL +A E + S+ Q + + Sbjct: 189 FSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASHV 248 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S ++ Sbjct: 249 DDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNNR 308 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 ++A VEQN+P + S E TD++EE +NYE+N+K+++T D Y ++RLSIAV Sbjct: 309 NDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIAV 368 Query: 362 VVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 V+++ RL + G + +D + +I +V+ A G+N+ RGD I +T+++FL+ + Sbjct: 369 VIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGAD 428 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA--KKGEVGGKS 478 V + D L R + NAL L L+ + GL L R N+ A + Sbjct: 429 MEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAGE 488 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 + +P I A + G I ++ D S S + + + LRL MIE++ Sbjct: 489 VATPNFIGGAESVGEGVQAVIGGPAAYADQMKTS---LSDLRQRMRMPAKLRLEQMIEMD 545 Query: 539 EERFAKILRKWARSEIEDRYTQH 561 EER A +L++W R Sbjct: 546 EERVAAVLKQWIHETASGREADP 568 >gi|256158325|ref|ZP_05456229.1| flagellar MS-ring protein [Brucella ceti M490/95/1] gi|256252741|ref|ZP_05458277.1| flagellar MS-ring protein [Brucella ceti B1/94] Length = 575 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 217/563 (38%), Positives = 326/563 (57%), Gaps = 9/563 (1%) Query: 4 LDQLLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 QL++ K LG +++ L V + + ++ P Y+ LYV L DVNR Sbjct: 5 FQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVNR 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S GL Sbjct: 65 MGRALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGL 123 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 TSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 124 TSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGG 183 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEI 241 +SA++IR LVAAAVP+LD VTVLD+ G LL +A E + S+ Q + + Sbjct: 184 FSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASHV 243 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S ++ Sbjct: 244 DDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNNR 303 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 ++A VEQN+P + S E TD++EE +NYE+N+K+++T D Y ++RLSIAV Sbjct: 304 NDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIAV 363 Query: 362 VVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 V+++ RL + G + +D + +I +V+ A G+N+ RGD I +T+++FL+ + Sbjct: 364 VIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGAD 423 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA--KKGEVGGKS 478 V + D L R + NAL L L+ + GL L R N+ A + Sbjct: 424 MEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAGE 483 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 + +P I A + G I ++ D S S + + + LRL MIE++ Sbjct: 484 VATPNFIGGAESVGEGVQAVIGGPAAYADQMKTS---LSDLRQRMRMPAKLRLEQMIEMD 540 Query: 539 EERFAKILRKWARSEIEDRYTQH 561 EER A +L++W R Sbjct: 541 EERVAAVLKQWIHETASGREADP 563 >gi|261215451|ref|ZP_05929732.1| flagellar M-ring protein FliF [Brucella abortus bv. 3 str. Tulya] gi|260917058|gb|EEX83919.1| flagellar M-ring protein FliF [Brucella abortus bv. 3 str. Tulya] Length = 580 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 217/563 (38%), Positives = 327/563 (58%), Gaps = 9/563 (1%) Query: 4 LDQLLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 QL++ K LG +++ L V + + ++ P Y+ LYV L DVNR Sbjct: 10 FQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVNR 69 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S GL Sbjct: 70 MGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGL 128 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 TSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 129 TSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGG 188 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEI 241 +SA++IR LVAAAVP+LD VTVLD+ G LL +A E + S+ Q + + Sbjct: 189 FSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASHV 248 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S ++ Sbjct: 249 DDSIRKALAPYLGLGHFQTSVQAVLDTDRRQTKETTYDPESRVERSVRVVRESGDSRNNR 308 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 ++A VEQN+P + S E TD++EE +NYE+N+K+++T D Y ++RLSIAV Sbjct: 309 NDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIAV 368 Query: 362 VVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 V+++ RL + G + +D + +I +V+ A G+N+ RGD I +T+++FL+ + Sbjct: 369 VIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGAD 428 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA--KKGEVGGKS 478 V + D L R + NAL L L+ + GL L R N+ A + Sbjct: 429 MEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAGE 488 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 + +P I A + G I ++ D S S + + + LRL MIE++ Sbjct: 489 VATPNFIGGAESVGEGVQAVIGGPAAYADQMKTS---LSDLRQRMRMPAKLRLEQMIEMD 545 Query: 539 EERFAKILRKWARSEIEDRYTQH 561 EER A +L++W R Sbjct: 546 EERVAAVLKQWIHETASGREADP 568 >gi|189023215|ref|YP_001932956.1| flagellar MS-ring protein [Brucella abortus S19] gi|254691603|ref|ZP_05154857.1| flagellar MS-ring protein [Brucella abortus bv. 6 str. 870] gi|254698196|ref|ZP_05160024.1| flagellar MS-ring protein [Brucella abortus bv. 2 str. 86/8/59] gi|254699268|ref|ZP_05161096.1| flagellar MS-ring protein [Brucella suis bv. 5 str. 513] gi|254702392|ref|ZP_05164220.1| flagellar MS-ring protein [Brucella suis bv. 3 str. 686] gi|254711225|ref|ZP_05173036.1| flagellar MS-ring protein [Brucella pinnipedialis B2/94] gi|254731641|ref|ZP_05190219.1| flagellar MS-ring protein [Brucella abortus bv. 4 str. 292] gi|256030146|ref|ZP_05443760.1| flagellar MS-ring protein [Brucella pinnipedialis M292/94/1] gi|256256791|ref|ZP_05462327.1| flagellar MS-ring protein [Brucella abortus bv. 9 str. C68] gi|189021789|gb|ACD74510.1| flagellar M-ring protein FliF [Brucella abortus S19] Length = 575 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 217/563 (38%), Positives = 327/563 (58%), Gaps = 9/563 (1%) Query: 4 LDQLLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 QL++ K LG +++ L V + + ++ P Y+ LYV L DVNR Sbjct: 5 FQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVNR 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S GL Sbjct: 65 MGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGL 123 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 TSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 124 TSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGG 183 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEI 241 +SA++IR LVAAAVP+LD VTVLD+ G LL +A E + S+ Q + + Sbjct: 184 FSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASHV 243 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S ++ Sbjct: 244 DDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNNR 303 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 ++A VEQN+P + S E TD++EE +NYE+N+K+++T D Y ++RLSIAV Sbjct: 304 NDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIAV 363 Query: 362 VVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 V+++ RL + G + +D + +I +V+ A G+N+ RGD I +T+++FL+ + Sbjct: 364 VIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGAD 423 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA--KKGEVGGKS 478 V + D L R + NAL L L+ + GL L R N+ A + Sbjct: 424 MEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAGE 483 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 + +P I A + G I ++ D S S + + + LRL MIE++ Sbjct: 484 VATPNFIGGAESVGEGVQAVIGGPAAYADQMKTS---LSDLRQRMRMPAKLRLEQMIEMD 540 Query: 539 EERFAKILRKWARSEIEDRYTQH 561 EER A +L++W R Sbjct: 541 EERVAAVLKQWIHETASGREADP 563 >gi|254695100|ref|ZP_05156928.1| flagellar MS-ring protein [Brucella abortus bv. 3 str. Tulya] Length = 575 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 217/563 (38%), Positives = 327/563 (58%), Gaps = 9/563 (1%) Query: 4 LDQLLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 QL++ K LG +++ L V + + ++ P Y+ LYV L DVNR Sbjct: 5 FQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVNR 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S GL Sbjct: 65 MGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGL 123 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 TSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 124 TSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGG 183 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEI 241 +SA++IR LVAAAVP+LD VTVLD+ G LL +A E + S+ Q + + Sbjct: 184 FSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASHV 243 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S ++ Sbjct: 244 DDSIRKALAPYLGLGHFQTSVQAVLDTDRRQTKETTYDPESRVERSVRVVRESGDSRNNR 303 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 ++A VEQN+P + S E TD++EE +NYE+N+K+++T D Y ++RLSIAV Sbjct: 304 NDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIAV 363 Query: 362 VVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 V+++ RL + G + +D + +I +V+ A G+N+ RGD I +T+++FL+ + Sbjct: 364 VIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGAD 423 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA--KKGEVGGKS 478 V + D L R + NAL L L+ + GL L R N+ A + Sbjct: 424 MEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAGE 483 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 + +P I A + G I ++ D S S + + + LRL MIE++ Sbjct: 484 VATPNFIGGAESVGEGVQAVIGGPAAYADQMKTS---LSDLRQRMRMPAKLRLEQMIEMD 540 Query: 539 EERFAKILRKWARSEIEDRYTQH 561 EER A +L++W R Sbjct: 541 EERVAAVLKQWIHETASGREADP 563 >gi|170741410|ref|YP_001770065.1| flagellar MS-ring protein [Methylobacterium sp. 4-46] gi|168195684|gb|ACA17631.1| flagellar M-ring protein FliF [Methylobacterium sp. 4-46] Length = 572 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 192/571 (33%), Positives = 310/571 (54%), Gaps = 18/571 (3%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M+ +Q + + + LG R+ L + L + ++++ P + LY L DV Sbjct: 1 MSGREQAERLWNNIIELGARRLAALGIIGLTVFLAVGLGAYYLSRPAQETLYGGLSRDDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 RI L +ANI F +S +G+++ VP +AR+ LA +GLP SS SGYELF+ + S Sbjct: 61 GRIGSVLKDANIPFDVSTDGTAVLVPYGHTAQARMLLAEKGLPQSSK-SGYELFNDLGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEIARTIQ++ G+ AARVHIV+PD GSFR+ P+ASV++R Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQTMKGVKAARVHIVLPDRGSFRREQQPPSASVVVRTE 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239 A+AIRHLVA+A+P + VTV+ + G LL + +++ GK ++ + + Sbjct: 180 PADDGSGAQAIRHLVASAIPGMKPERVTVIGTDGTLLLSGDDVGNAPTGKMANLEKLVNR 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 EI+ NI + L +LGV NF +V A LN D E +++PD +VERS++ +++ + S+ Sbjct: 240 EIQDNIRRTLTPYLGVGNFEVSVAARLNTDKTSTNETIFNPDQRVERSVKATRETENSQN 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + T +QN+P R S T K+E+ +NYEI++K+I T D Y ++++S+ Sbjct: 300 RSSQRPTTAQQNLPDQRTRSDGNDTSSTETQKREDLTNYEISSKTIQTVSDGYGIKQISV 359 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AV+VNK RL+ + G +A ID + EI ++V++A G + RGD + + ++ F+ + Sbjct: 360 AVLVNKSRLSSLAGPNAPPAAIDQQIGEIEQLVASAAGFSKERGDHVKVAAVGFVNDGAP 419 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNIDDAKKGEVGGKS 478 +S ++L R AT+INA LV L+ + GL LR + + A++ + Sbjct: 420 LEPVPPLSLTEVLMRQSATLINAATILVVASLLIWFGLRPALRAILEVPAAEQEIAALAA 479 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRN---------------LQSRINSYV 523 + + + L+ S + + L + + + Sbjct: 480 EGAAGAVPALPGAEAGSAAAGLLEGSPEAAALAAAGGTPGPAQLGPPVMASLIDDLTNRM 539 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + +L MIE +EE+ A IL++W E Sbjct: 540 NSSPQKKLEQMIEFDEEQAANILKRWLMREE 570 >gi|161621189|ref|YP_001595075.1| flagellar MS-ring protein [Brucella canis ATCC 23365] gi|161338000|gb|ABX64304.1| flagellar M-ring protein FliF [Brucella canis ATCC 23365] Length = 580 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 217/563 (38%), Positives = 327/563 (58%), Gaps = 9/563 (1%) Query: 4 LDQLLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 QL++ K LG +++ L V + + ++ P Y+ LYV L DVNR Sbjct: 10 FQQLIEQLKGTLGKLGARKLIALGLVGAALMSAILYMSIYLGRPSYETLYVGLSRDDVNR 69 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S GL Sbjct: 70 MGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGL 128 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 TSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 129 TSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGG 188 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEI 241 +SA++IR LVAAAVP+LD VTVLD+ G LL +A E + S+ Q + + Sbjct: 189 FSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASHV 248 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S ++ Sbjct: 249 DDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNNR 308 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 ++A VEQN+P + S E TD++EE +NYE+N+K+++T D Y ++RLSIAV Sbjct: 309 NDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIAV 368 Query: 362 VVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 V+++ RL + G + +D + +I +V+ A G+N+ RGD I +T+++FL+ + Sbjct: 369 VIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGAD 428 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA--KKGEVGGKS 478 V + D L R + NAL L L+ + GL L R N+ A + Sbjct: 429 MEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAGE 488 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 + +P I A + G I ++ D S S + + + LRL MIE++ Sbjct: 489 VATPNFIGGAESVGEGVQAVIGGPAAYADQMKTS---LSDLRQRMRMPAKLRLEQMIEMD 545 Query: 539 EERFAKILRKWARSEIEDRYTQH 561 EER A +L++W R Sbjct: 546 EERVAAVLKQWIHETASGREADP 568 >gi|148558201|ref|YP_001258009.1| flagellar MS-ring protein [Brucella ovis ATCC 25840] gi|148369486|gb|ABQ62358.1| flagellar M-ring protein FliF [Brucella ovis ATCC 25840] Length = 568 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 216/563 (38%), Positives = 328/563 (58%), Gaps = 11/563 (1%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +++QL + LG +++ L V + + ++ P Y+ LYV L DVNR Sbjct: 1 MIEQLK---GTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVNR 57 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S GL Sbjct: 58 MGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGL 116 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 TSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 117 TSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGG 176 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEI 241 +SA++IR LVAAAVP+LD VTVLD+ G LL +A E + S+ Q + + Sbjct: 177 FSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASHV 236 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S ++ Sbjct: 237 DDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNNR 296 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 ++A VEQN+P + S E TD++EE +NYE+N+K+++T D Y ++RLSIAV Sbjct: 297 NDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIAV 356 Query: 362 VVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 V+++ RL + G + +D + +I +V+ A G+N+ RGD I +T+++FL+ + Sbjct: 357 VIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGAD 416 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA--KKGEVGGKS 478 V + D L R + NAL L L+ + GL L R N+ A + Sbjct: 417 MEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAGE 476 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 + +P I A + G I ++ D S S + + + LRL MIE++ Sbjct: 477 VATPNFIGGAESVGEGVQAVIGGPAAYADQMKTS---LSDLRQRMRMPAKLRLEQMIEMD 533 Query: 539 EERFAKILRKWARSEIEDRYTQH 561 EER A +L++W R Sbjct: 534 EERVAAVLKQWIHETASGREADP 556 >gi|163757999|ref|ZP_02165087.1| flagellar M-ring protein [Hoeflea phototrophica DFL-43] gi|162284288|gb|EDQ34571.1| flagellar M-ring protein [Hoeflea phototrophica DFL-43] Length = 560 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 249/563 (44%), Positives = 364/563 (64%), Gaps = 11/563 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M++L+QL Q K+ SLG+ R+L L V + L +AA F+N P + LY+ L D+ Sbjct: 1 MSLLNQLSQIGKNLASLGQARMLTLGGVGAASVALIIAAALFLNKPARETLYIGLSGEDM 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +IS+ L+E+NIDF +G+SI+VP+ M +AR+ LA +GLP SS+ +GYELFDKV S Sbjct: 61 TQISLVLAESNIDFASGLDGNSITVPAGMTSRARMLLAERGLP-SSNTAGYELFDKVGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEIARTIQSI+GI AARVH+VM D G+FR+ +P+ASVM+R Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQSINGISAARVHLVMADRGNFRRGEQQPSASVMVRTG 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239 ++A +IRHLVA++VP L++ +VTVLD+TG+LL T ++ + L +SLSIVQ +Q+ Sbjct: 180 TNLAPRTANSIRHLVASSVPGLNVDEVTVLDATGQLLATGDDFSNSNLNRSLSIVQLVQN 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 E+E NI KALA FLG++NFR++V A +N D+QQ++E ++DP+S+VERS R++++ Q S Sbjct: 240 EVETNIEKALAPFLGIENFRASVTATVNTDSQQVQETIFDPESRVERSTRVTRENQTSNQ 299 Query: 300 SQPESAVTVEQNMPHV--SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 S ++ TVEQN+P + P+S E ++KEEQ+NYEIN+K I+T ++Y +E L Sbjct: 300 SATDTPATVEQNIPDQGPAAGGAAGPQSSELAERKEEQTNYEINSKVISTVRNSYTVEGL 359 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 S+AVVVN+ R+ ++ G + + + ++LAE+ +V+ A G++ RGD IT MDF+ ++ Sbjct: 360 SVAVVVNRARIADMYGGAPTEEQTAAFLAEVQTLVNLAAGVDDERGDRANITVMDFMASE 419 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 L + Q F D L H T+INA+ F+ +L+ G L L A++ E Sbjct: 420 LLTADAAQGGFGDTLKTHIGTIINAIAFITVAVLLIMFGFRPL--LGAGKTAEQAEDAVD 477 Query: 478 SILSPPPI---SSAVTTGLMPNDNIALD-SSNQDIFSHSRNLQSR-INSYVSKQSDLRLL 532 I P ++ G MP + D +D S +S N V + + RL Sbjct: 478 DIGLELPDFSPAAMGGPGAMPMEGFGADFGFGEDGDSELEMEESGSFNRRVKEGPERRLA 537 Query: 533 HMIEINEERFAKILRKWARSEIE 555 M+EINEER AKILR+W+ E Sbjct: 538 RMVEINEERAAKILRQWSSGEAA 560 >gi|62317964|ref|YP_223817.1| flagellar MS-ring protein [Brucella abortus bv. 1 str. 9-941] gi|68067522|sp|O52069|FLIF_BRUAB RecName: Full=Flagellar M-ring protein gi|62198157|gb|AAX76456.1| FliF, flagellar M-ring protein [Brucella abortus bv. 1 str. 9-941] Length = 580 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 216/563 (38%), Positives = 326/563 (57%), Gaps = 9/563 (1%) Query: 4 LDQLLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 QL++ K LG +++ L V + + ++ P Y+ LYV L DVNR Sbjct: 10 FQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVNR 69 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S GL Sbjct: 70 MGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGL 128 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 TSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 129 TSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGG 188 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEI 241 +SA++IR LVAAAVP+LD VTVLD+ G LL +A E + S+ Q + + Sbjct: 189 FSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASHV 248 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S ++ Sbjct: 249 DDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNNR 308 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 ++A VEQN+P + S E D++EE +NYE+N+K+++T D Y ++RLSIAV Sbjct: 309 NDNATGVEQNIPQEQIQNRNGESSTEKMDRREELTNYEVNSKTVSTVSDGYSIKRLSIAV 368 Query: 362 VVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 V+++ RL + G + +D + +I +V+ A G+N+ RGD I +T+++FL+ + Sbjct: 369 VIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGAD 428 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA--KKGEVGGKS 478 V + D L R + NAL L L+ + GL L R N+ A + Sbjct: 429 MEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAGE 488 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 + +P I A + G I ++ D S S + + + LRL MIE++ Sbjct: 489 VATPNFIGGAESVGEGVQAVIGGPAAYADQMKTS---LSDLRQRMRMPAKLRLEQMIEMD 545 Query: 539 EERFAKILRKWARSEIEDRYTQH 561 EER A +L++W R Sbjct: 546 EERVAAVLKQWIHETASGREADP 568 >gi|122065185|sp|Q8YDM4|FLIF_BRUME RecName: Full=Flagellar M-ring protein Length = 580 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 216/563 (38%), Positives = 327/563 (58%), Gaps = 9/563 (1%) Query: 4 LDQLLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 QL++ K LG +++ L V + + ++ P Y+ LYV L DVNR Sbjct: 10 FQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVNR 69 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S GL Sbjct: 70 MGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGL 128 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 TSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 129 TSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGG 188 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEI 241 +SA++IR LVAAAVP+LD VTVLD+ G LL +A E + S+ Q + + Sbjct: 189 FSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASHV 248 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S ++ Sbjct: 249 DDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNNR 308 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 ++A VEQN+P + S E TD++EE +NYE+N+ +++T D Y ++RLSIAV Sbjct: 309 NDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSMTVSTVSDGYSIKRLSIAV 368 Query: 362 VVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 V+++ RL + G + +D + +I +V+ A G+N+ RGD I +T+++FL++ + Sbjct: 369 VIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDSAGAD 428 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA--KKGEVGGKS 478 V + D L R + NAL L L+ + GL L R N+ A + Sbjct: 429 MEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAGE 488 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 + +P I A + G I ++ D S S + + + LRL MIE++ Sbjct: 489 VATPNFIGGAESVGEGVQAVIGGPAAYADQMKTS---LSDLRQRMRMPAKLRLEQMIEMD 545 Query: 539 EERFAKILRKWARSEIEDRYTQH 561 EER A +L++W R Sbjct: 546 EERVAAVLKQWIHETASGREADP 568 >gi|306845426|ref|ZP_07478000.1| flagellar M-ring protein FliF [Brucella sp. BO1] gi|306274169|gb|EFM55985.1| flagellar M-ring protein FliF [Brucella sp. BO1] Length = 575 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 216/563 (38%), Positives = 326/563 (57%), Gaps = 9/563 (1%) Query: 4 LDQLLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 QL++ K LG +++ L V + + ++ P Y+ LYV L DVNR Sbjct: 5 FQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVNR 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + +AL EA+I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S GL Sbjct: 65 MGLALGEADIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGL 123 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 TSFMQEIT VRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 124 TSFMQEITHVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGG 183 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEI 241 +SA++IR LVAAAVP+LD VTVLD+ G LL +A E + S+ Q + + Sbjct: 184 FSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALITASLEQQVASHV 243 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S ++ Sbjct: 244 DDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNNR 303 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 ++A VEQN+P + S E TD++EE +NYE+N+K+++T D Y ++RLSIAV Sbjct: 304 NDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIAV 363 Query: 362 VVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 V+++ RL + G + +D + +I +V+ A G+N+ RGD I +T+++FL+ + Sbjct: 364 VIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNANRGDVINVTAVNFLDPAGAD 423 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA--KKGEVGGKS 478 V + D L R + NAL L L+ + GL L R N+ A + Sbjct: 424 MEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAGE 483 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 + P I A + G I ++ D S S + + + LRL MIE++ Sbjct: 484 VAMPNFIGGAESVGEGVQAVIGGPAAYADQMKTS---LSDLRQRMRMPAKLRLEQMIEMD 540 Query: 539 EERFAKILRKWARSEIEDRYTQH 561 EER A +L++W R Sbjct: 541 EERVAAVLKQWIHETASGREADP 563 >gi|239834433|ref|ZP_04682761.1| flagellar M-ring protein FliF [Ochrobactrum intermedium LMG 3301] gi|239822496|gb|EEQ94065.1| flagellar M-ring protein FliF [Ochrobactrum intermedium LMG 3301] Length = 590 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 213/566 (37%), Positives = 327/566 (57%), Gaps = 8/566 (1%) Query: 4 LDQLLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 QL++ K LG +++ L V + + +++ P Y+ LYV L DVNR Sbjct: 10 FQQLIEQLKGTLGKLGARKLVALGLVGAALMAAILYTSIYLSRPSYETLYVGLSRDDVNR 69 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S GL Sbjct: 70 MGLALGEAGIPFDVKADGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGL 128 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 TSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 129 TSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGG 188 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEI 241 +SA++IR LVAAAVP+LD VTVLD+ G+LL +A E + S+ Q + + Sbjct: 189 FAAESAQSIRQLVAAAVPSLDASAVTVLDTNGRLLASAGEAANGAALMTASLEQQVAGNV 248 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + +I KALA +LG+ +F+++V A L+ D +Q E ++DP+S+VERS+R+ +++ S ++ Sbjct: 249 DDSIRKALAPYLGMGHFQTSVQAVLDTDRRQTNETIFDPESRVERSVRVVRESGDSRNNR 308 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 ++A VEQN+P + S E TD++EE +NYE+N+K+++T D Y ++RLSIAV Sbjct: 309 NDNATGVEQNIPQEEIQNRNGESSSEKTDRREELTNYEMNSKTVSTVSDGYTVKRLSIAV 368 Query: 362 VVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 V+++ RL E G + +D +A+I +V+ A G+N+ RGD I +T+++FL+ + Sbjct: 369 VIDQARLLETAGTTPPPANFVDQQIAKIRDLVATAAGLNADRGDVINVTAVNFLDPAGAD 428 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG----EVGG 476 V + D + R + +NAL L L+ + GL L R N A E Sbjct: 429 MEPVSTPWTDTVLRQSGSYVNALAILAAVGLLIWFGLRPLLRDQNARTAGTEVAIRETSD 488 Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536 + +A A+ + + S + + + LRL MI+ Sbjct: 489 VAAPDFVGGQAAGEGVQGAQGVQAVIGGPEAYADQMKTSLSDLRQRMRMPAKLRLEQMID 548 Query: 537 INEERFAKILRKWARSEIEDRYTQHI 562 ++EER A +L++W R Q + Sbjct: 549 MDEERVAAVLKQWIHETAASREGQPL 574 >gi|260466610|ref|ZP_05812798.1| flagellar M-ring protein FliF [Mesorhizobium opportunistum WSM2075] gi|259029616|gb|EEW30904.1| flagellar M-ring protein FliF [Mesorhizobium opportunistum WSM2075] Length = 549 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 225/554 (40%), Positives = 329/554 (59%), Gaps = 7/554 (1%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + +Q+ + G R+ +LA + ++ + + A ++N P YD LYV L+ SDVN+ Sbjct: 1 MPEQIQSIISNLRGFGVKRLAMLAGIAVLVMGVIGIASVYLNRPAYDTLYVGLDRSDVNQ 60 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I + L EA I F + +G+S+ VP+ +AR+ LA +GLP+ S+N+GYELFD V + GL Sbjct: 61 IGLVLGEAGIGFDVGADGTSVLVPAGTTAQARMLLAEKGLPT-SANAGYELFDNVGAMGL 119 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 TSFMQ+ITRVRALEGEIARTIQSI+GI AARVHIVM + +FR+ +P+ASV+IR Sbjct: 120 TSFMQQITRVRALEGEIARTIQSIAGIKAARVHIVMSERANFRRDEQQPSASVVIRYAGI 179 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEI 241 KSA +IRHLVAAAVP L VTVLDS G LL A + N ++L + Q ++ +I Sbjct: 180 DAEKSAMSIRHLVAAAVPGLSADKVTVLDSNGNLLAAGDDPSNTSAARTLGVEQTVEAQI 239 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 NI +AL +LG DNFR++V AE+N DT+Q E ++DP+S+VERS++ + + S Q Sbjct: 240 GDNIRRALTPYLGPDNFRASVKAEVNTDTRQTEETIFDPNSRVERSVQSVRANENSNQKQ 299 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 + +VEQN+P P++ D+KEE +NYEIN+K IAT + Y + ++SIAV Sbjct: 300 ASTPASVEQNLPETQAASTEGPQTSSANDRKEEITNYEINSKKIATVSNGYTVTKMSIAV 359 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 VVN+ RL +LG+ A +I +AEI K+VS+ATG + +RGD I +++++F++ L Sbjct: 360 VVNQDRLKTILGKDATPEQIAKRVAEIQKMVSSATGFDDKRGDVIDVSAVEFIDG-LDGE 418 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 Q +D + +H T+INA F+V LV F GL + + G + Sbjct: 419 AVPQAGMLDSIGQHAGTLINAGAFIVVVFLVAFFGLRPMAAALTAKATPTPAISGPNFDE 478 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 N + S + + +L+ +I RL M++INEER Sbjct: 479 VQRSLPTPEAAASANAAVGALPSARPGATPLDDLRQKIR----PAPQERLARMVDINEER 534 Query: 542 FAKILRKWARSEIE 555 A+ILRKWA E+ Sbjct: 535 TAQILRKWAAQEVA 548 >gi|153011515|ref|YP_001372729.1| flagellar MS-ring protein [Ochrobactrum anthropi ATCC 49188] gi|151563403|gb|ABS16900.1| flagellar M-ring protein FliF [Ochrobactrum anthropi ATCC 49188] Length = 579 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 219/563 (38%), Positives = 328/563 (58%), Gaps = 8/563 (1%) Query: 4 LDQLLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 QL++ K LG +++ L V + + +++ P Y+ LYV L DVNR Sbjct: 5 FQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLSRPSYETLYVGLSRDDVNR 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S GL Sbjct: 65 MGLALGEAGIPFDVKADGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGL 123 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 TSFMQEITRVRALEGEIARTIQ+I G+ AARVHIVM + GSFR+ +P+ASV+IRA Sbjct: 124 TSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVMAEKGSFRRGDQKPSASVVIRAEGG 183 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEI 241 +SA++IR LVAAAVP+LD VTVLD+ G+LL +A E + S+ Q + + Sbjct: 184 FAAESAQSIRQLVAAAVPSLDASAVTVLDTNGRLLASAGEAANGAALMTASLEQQVAGNV 243 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + +I KALA +LG+ +F+++V A L+ D +QI E YDP+S+VERS+R+ +++ S ++ Sbjct: 244 DDSIRKALAPYLGIGHFQTSVQAVLDTDRRQINETTYDPESRVERSVRVVRESGDSRNNR 303 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 ++A VEQN+P + S E TD++EE +NYE+N+K+++T D Y ++RLSIAV Sbjct: 304 NDNATGVEQNIPQEEIQNRNGESSTEKTDRREELTNYEMNSKTVSTVSDGYTVKRLSIAV 363 Query: 362 VVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 V+++ RL E G + +D + +I +V+ A G+N+ RGD I +T+++FL+ + Sbjct: 364 VIDQARLLETAGTTPPPANFVDQQITKIRDLVATAAGLNADRGDVINVTAVNFLDPAGAD 423 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK-KGEVGGKSI 479 V + D + R + +NAL L L+ + GL L R N + V S Sbjct: 424 MEPVSTPWTDTVLRQSGSYVNALAILAAVGLLIWFGLRPLLRDQNAKPTGTEVAVRETSE 483 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 ++ P G I + D S S + + + LRL MI+++E Sbjct: 484 VAMPNFVGGQAAGEGVQAVIGGPEAYADQMKTS---LSDLRQRMRMPAKLRLEQMIDMDE 540 Query: 540 ERFAKILRKWARSEIEDRYTQHI 562 ER A IL++W R Q + Sbjct: 541 ERVASILKQWIHETAASREAQPL 563 >gi|158422251|ref|YP_001523543.1| flagellar MS-ring protein [Azorhizobium caulinodans ORS 571] gi|158329140|dbj|BAF86625.1| flagellar M-ring protein [Azorhizobium caulinodans ORS 571] Length = 559 Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 209/561 (37%), Positives = 312/561 (55%), Gaps = 13/561 (2%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M +QL + + LG R++ L + + + +++ P + LY L DV Sbjct: 1 MNAREQLERLLSNLRQLGARRLVALGLIAFTVMAVIGLGAMYLSQPERETLYANLSRDDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 RI AL +A I F +S +G+++ V S +AR+ LA +GLP SSS SGYELF+ V SF Sbjct: 61 TRIGGALKDAGIPFDVSSDGATVLVAHSDTARARMLLAVKGLPQSSS-SGYELFNDVRSF 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+T+VRALEGEIARTIQ++ GI AARVHIV+PD GSFR+ TASV+IR Sbjct: 120 GLTSFMQEVTKVRALEGEIARTIQTMKGIKAARVHIVLPDRGSFRRDQQLATASVVIRTE 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS-LSIVQAIQH 239 N + +A+AIRHLVAAA+P + + +VTVL++ G +LT+ E ++ Q + Sbjct: 180 NSADSSTAQAIRHLVAAAIPGMKLDNVTVLNTEGTILTSTEDGVTAAATRKSALQQQVNR 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 E E I + L FLG+ NF +V + LN D I E YDP SK ERS R+ K+ +++ Sbjct: 240 ETEEKIRRTLTPFLGLGNFEVSVSSRLNTDRSTINETTYDPASKAERSTRVVKEQGQTQN 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + TV+QN+P + EN ++EE +N+EI+T+ T D Y +E LSI Sbjct: 300 RSQQPNTTVQQNIPPPPGTPGTGTENNENNQRREELTNFEISTRQSQTVRDAYSVENLSI 359 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AV+VNK RLT D +++ EI ++VS+A G + RGD + + ++ F + Sbjct: 360 AVLVNKERLTGTK----DGTPLETQTYEIEQLVSSAAGFDKERGDKLKVVAVPFADGGNN 415 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNIDDAKKGEVGGKS 478 +++ ++L R T++NA+ LV +L+ + GL LR + + + E + Sbjct: 416 MEPIPPLTWSELLFRQAGTIVNAVTILVVAILLIWFGLRPALRAILARPEPDEAEAIEAA 475 Query: 479 ILSP----PPISSAVTTGLMPN--DNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 +L+ PP + +T PN D + + S NL + S V++ RL Sbjct: 476 MLAAPTELPPDTVLPSTAQNPNTLDGVTTLAGFTGGDSGPVNLIGDVTSKVNRSPQRRLE 535 Query: 533 HMIEINEERFAKILRKWARSE 553 MIE +EE+ A ILR+W E Sbjct: 536 QMIEYDEEQAAAILRQWLHQE 556 >gi|170748099|ref|YP_001754359.1| flagellar MS-ring protein [Methylobacterium radiotolerans JCM 2831] gi|170654621|gb|ACB23676.1| flagellar M-ring protein FliF [Methylobacterium radiotolerans JCM 2831] Length = 546 Score = 458 bits (1178), Expect = e-126, Method: Composition-based stats. Identities = 195/560 (34%), Positives = 310/560 (55%), Gaps = 17/560 (3%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + L + + + LG R++ L V L + ++++ P + LY L DV Sbjct: 1 MPGREHLQKLWTNILDLGPRRLIALGLVGLTVFLAVGLGAYYLSRPLRETLYSGLSRDDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +R+ AL +A I F IS +G+S+ V +AR+ LA +GLP S +GYELF+ + S Sbjct: 61 SRMGAALKDAGIPFDISADGTSVLVSYGQTAQARMLLAEKGLPQSGK-AGYELFNDLGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQ+ITRVRALEGEIARTIQ++ + AARVHIVMPD GSFR+ +ASV++R Sbjct: 120 GLTSFMQDITRVRALEGEIARTIQTLKSVKAARVHIVMPDPGSFRREQQPASASVVVRTE 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS-IVQAIQH 239 + A AIR LVAAA+P + VTVL++ G +L A + L+ + Q++ Sbjct: 180 PANDATVAPAIRQLVAAAIPGMKPDKVTVLNTDGTVLLAGDDATTAPAGRLANLEQSVNR 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 EI+ NI + L +LG +NF +VVA LN D + E +++PD KVERS+R K++ S+ Sbjct: 240 EIQDNIRRTLTPYLGPNNFEVSVVARLNTDKTKTDETIFNPDQKVERSLRTIKESDSSQN 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 P+ T +QN+P R S + ++EE +N+EI++K++ T D Y ++ LS+ Sbjct: 300 RAPQKPTTAQQNLPDQRVRSEGAENSSAESQRREELTNFEISSKTVQTVSDGYSIKTLSV 359 Query: 360 AVVVNKGRLTEVLG--RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 AV+VN+ RL + G + +D +AEI ++V++A G+N RGD + + ++ F++ Sbjct: 360 AVLVNRSRLEALAGGAKGGTAPPLDPQVAEIEQLVTSAAGVNRARGDQLKVAAVSFIDEG 419 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 + + F D+L R T+INA L+ L+ + G LR N A+ E G + Sbjct: 420 QPLAPAPALGFTDVLMRQSGTLINAATILIVGCLLIWFG---LRPAVNAILARPAETGTE 476 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 L+ P S + S+ + S +L + ++++ +L ++E+ Sbjct: 477 LALATPDAGSGLDG----------PSAEKGGTSPEPSLIEDLTEHMARSPIRKLEQLVEL 526 Query: 538 NEERFAKILRKWARSEIEDR 557 +EE+ A IL++W E R Sbjct: 527 DEEQVANILKQWLTREEVAR 546 >gi|13472585|ref|NP_104152.1| flagellar MS-ring protein [Mesorhizobium loti MAFF303099] gi|14023331|dbj|BAB49938.1| flagellar basal-body MS-ring protein; FliF [Mesorhizobium loti MAFF303099] Length = 549 Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats. Identities = 224/555 (40%), Positives = 328/555 (59%), Gaps = 9/555 (1%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + +Q+ + G R+ +LA + ++ + + A ++N P YD LYV L+ +DVN+ Sbjct: 1 MPEQIQSIISNLRGFGVKRLAMLAGIAVLVMGVIGIASVYLNRPAYDTLYVGLDRADVNQ 60 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I + L EA I F + +G+S+ VP+ +AR+ LA +GLP+ S+N+GYELFD V + GL Sbjct: 61 IGLVLGEAGIGFDVGSDGTSVLVPAGTTAQARMLLAEKGLPT-SANAGYELFDNVGAMGL 119 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 TSFMQ+ITRVRALEGEIARTIQSISGI AARVHIVM + +FR+ +P+ASV+IR Sbjct: 120 TSFMQQITRVRALEGEIARTIQSISGIKAARVHIVMSERANFRRDEQQPSASVVIRYAGI 179 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEI 241 KSA++IRHLVAAAVP L VTVLDS G LL A + N ++L + Q ++ +I Sbjct: 180 DAEKSAQSIRHLVAAAVPGLSADKVTVLDSNGNLLAAGDDPSNTSAARTLGVEQTVEAQI 239 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 NI +AL +LG DNFR++V AE+N DT+Q E ++DP+S+VERS++ + + S Q Sbjct: 240 GDNIRRALTPYLGPDNFRASVKAEVNTDTRQTEETIFDPNSRVERSVQSVRANENSNQKQ 299 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 + +VEQN+P P++ D+KEE +NYEIN+K IAT + Y + ++SIAV Sbjct: 300 ASTPASVEQNLPETQATSTEGPQTTSANDRKEEITNYEINSKKIATVSNGYTVTKMSIAV 359 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 VVN+ RL +LG+ A +I +AEI K+V++ATG++ +RGD I +++++F++ L Sbjct: 360 VVNQDRLKTILGKDATPEQIAKRVAEIQKMVTSATGLDDKRGDVIDVSAVEFIDG-LDGE 418 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG-KSIL 480 Q +D + +H T+INA F+V LV F GL + + Sbjct: 419 AIPQAGMLDSIGQHAGTLINAGAFIVVVFLVAFFGLRPMAAALTARATPALSGPNFDEVQ 478 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 P A + AL S N + + RL M+++NEE Sbjct: 479 RSLPTPEAAASADAGAAIGALPGSR-----PGTNPLDDLRQKIRPAPQERLARMVDLNEE 533 Query: 541 RFAKILRKWARSEIE 555 R A+ILRKWA E+ Sbjct: 534 RTAQILRKWAAQEVA 548 >gi|319781672|ref|YP_004141148.1| flagellar M-ring protein FliF [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167560|gb|ADV11098.1| flagellar M-ring protein FliF [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 548 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 227/554 (40%), Positives = 332/554 (59%), Gaps = 8/554 (1%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + +Q+ + G R+ +LA + ++ + + A ++N P YD LYV L+ +DVN+ Sbjct: 1 MPEQIQSIISNLRGFGVKRLAMLAGIAVLVMGVIGIASVYLNRPAYDTLYVGLDRADVNQ 60 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I + L EA I F + +G+S+ VP+ +AR+ LA +GLP+ S+N+GYELFD V S GL Sbjct: 61 IGLVLGEAGIGFDVGADGTSVLVPAGTTAQARMLLAEKGLPT-SANAGYELFDNVGSLGL 119 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 TSFMQ+ITRVRALEGEIARTIQSISGI AARVHIVM + +FR+ +P+ASV+IR Sbjct: 120 TSFMQQITRVRALEGEIARTIQSISGIKAARVHIVMSERANFRRDEQQPSASVVIRYAGI 179 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEI 241 KSA +IRHLVAAAVP L VTVLDS+G LL A + N ++L + Q ++ +I Sbjct: 180 DAEKSAMSIRHLVAAAVPGLSADKVTVLDSSGNLLAAGDDPSNTSAARTLGVEQTVEAQI 239 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 NI +AL A+LG DNFR++V AE+N DT+Q E ++DP+S+VERS++ + + + Q Sbjct: 240 GDNIRRALTAYLGPDNFRASVKAEVNTDTRQTEETIFDPNSRVERSVQSVRANENNNQKQ 299 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 + +VEQN+P P+S D++EE +NYEIN+K IAT + Y + ++SIAV Sbjct: 300 ASTPASVEQNLPETQATATDGPQSSSQNDRREEITNYEINSKKIATVSNGYTVTKMSIAV 359 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 VVN+ RLT +LG+ A +I +AEI K+V++ATG++ +RGD I +++++F++ L Sbjct: 360 VVNQQRLTTILGKDATPEQIAKRVAEIQKMVTSATGLDEKRGDIIDVSAVEFIDG-LDGE 418 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 Q +D + +H T+INA F+V LV F G LR + AK Sbjct: 419 AIPQAGMLDSIGQHAGTMINAGAFIVVVFLVAFFG---LRPMAAALTAKAAPALAGPSFD 475 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 S + DN A+ + + + RL M+++NEER Sbjct: 476 DVQRSLPTPEAMAATDNAAVGALPG--TRPGPTPLDDLRQKIRPAPQDRLARMVDLNEER 533 Query: 542 FAKILRKWARSEIE 555 A+ILRKWA E+ Sbjct: 534 TAQILRKWASQEVA 547 >gi|296447983|ref|ZP_06889889.1| flagellar M-ring protein FliF [Methylosinus trichosporium OB3b] gi|296254493|gb|EFH01614.1| flagellar M-ring protein FliF [Methylosinus trichosporium OB3b] Length = 551 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 193/555 (34%), Positives = 316/555 (56%), Gaps = 8/555 (1%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 +D+ Q + LG ++ LA + + + + ++V+ P ++ LY L+ DV+RI Sbjct: 1 MDRFNQLRDNLIGLGPRKLSALALIFTLVLAITGLGAYYVSRPDFEVLYSGLDREDVSRI 60 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L + + F I+ G+++ V +AR+ LA +GLP S+N+GYELFDKV S GLT Sbjct: 61 GAVLKSSGVAFDINPEGNAVLVRYGQTAQARMLLAERGLPQ-SANAGYELFDKVGSLGLT 119 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 SFMQE+TRVRALEGE+ARTIQ I G+ AARVHIV+PD GSFR++ P+ASV+IR +P Sbjct: 120 SFMQEVTRVRALEGELARTIQLIRGVKAARVHIVLPDEGSFRRVRQPPSASVVIRTESPD 179 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHEI 241 K+A+AIRHLVAA++P + + VTVL++ G LL+A++ + K+L++ + + +I Sbjct: 180 DSKAAQAIRHLVAASIPGMTVDQVTVLNTDGMLLSASDGDATDAAPAKTLTLEKTVSKDI 239 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + NI + L +L + NF+ +V A +N D +Q E ++DP+S+VERS+R+ K+ S+ + Sbjct: 240 QDNIRRTLTPYLRLANFQVSVRARINTDRKQTNETIFDPESRVERSVRVVKENSTSQNNS 299 Query: 302 PESAVTVEQNMPHVSDRKVPLP-RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 A +VE+N+P + +S + K EE +N+E++TK++ T Y LE LSIA Sbjct: 300 TSQAASVERNVPQEKPQAGGEGKQSNDENKKSEELTNFELSTKTVTTVSGGYTLENLSIA 359 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 V+VN+G L + ++ L EI ++V++A G+ RGDT+ ++++DF N+ Sbjct: 360 VLVNRGSLAGSGKDAPKPEALERQLKEIEQLVASAAGVRKDRGDTVKVSAVDFAINENDL 419 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 + + + L+ +VINA ++ TLL+ F GL R + E + Sbjct: 420 APVEPAGWSEALTHQLGSVINAGALILVTLLLVFFGLRPASRALLAEAPAPMETA-LADD 478 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 PP+ A + +P + + + + L I +L +IE +E Sbjct: 479 VGPPLLGAEPSIELPFAPMEMPQFTGQMDT---GLIEDIGGREKFNQQKKLEQLIEADEM 535 Query: 541 RFAKILRKWARSEIE 555 + A IL++W +E Sbjct: 536 QAAAILKQWMYAEGS 550 >gi|188579876|ref|YP_001923321.1| flagellar MS-ring protein [Methylobacterium populi BJ001] gi|179343374|gb|ACB78786.1| flagellar M-ring protein FliF [Methylobacterium populi BJ001] Length = 570 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 190/570 (33%), Positives = 313/570 (54%), Gaps = 18/570 (3%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M +Q + + + LG R++ L V L+ + ++++ P + LY L DV Sbjct: 1 MFGREQAERLWSNIVDLGARRLIALGLVGLLVFLGVGIGAYYLSRPAQETLYTGLSREDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +RI L + I F +S +G+++ V +AR+ LA +GLP SS SGYELF+ + S Sbjct: 61 SRIGGVLKDNGIPFDVSSDGTAVLVSFGHTAQARMLLAEKGLPQSSK-SGYELFNDLGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 G+TSFMQE+TRVRALEGEIARTIQ + G+ AARVH+V+PD GSFR+ +ASV++R Sbjct: 120 GMTSFMQEVTRVRALEGEIARTIQGMKGVRAARVHLVLPDRGSFRRDQQPASASVVVRTE 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK-LLTANEMERNILGKSLSIVQAIQH 239 A+AIR LVA+A+P + VTV+ S G LL ++ GK ++ +++ Sbjct: 180 PADDVSGAQAIRQLVASAIPGMKPDRVTVIGSEGTVLLAGDDAGTAPTGKMATLEKSVSR 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 E++ NI + L+ +LGV NF +V +LN D E +Y+PD +VERS+R ++++ ++ Sbjct: 240 EMQDNIRRTLSPYLGVGNFEVSVATQLNTDKTSTNETIYNPDQRVERSVRSVRESENAQN 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + + ++N+P R +S + KKE+ +NYEI+ K++ T D Y + RLS+ Sbjct: 300 RNSQRPTSAQENLPDQRTRSDGNDQSSNESSKKEDLTNYEISQKTVQTVSDGYAIRRLSV 359 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AV+VN+ RLT + G D+ +D +AEI ++V +A G + RGDTI + ++ F+ + Sbjct: 360 AVLVNRSRLTALAGPD-DKAALDKQIAEIEELVGSAAGFSKERGDTIKVAAVGFVNDGQP 418 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNIDDAKKGEVGGKS 478 +S D++ + T+INA LV L+ + GL LR + +A + EV + Sbjct: 419 LEPVPPLSLTDVMMKQSGTLINAATILVVAGLLIWFGLRPALRAILATPEAAQSEVAALA 478 Query: 479 ILSPPPI-SSAVTTGLMPNDNIALDSSNQDI-------------FSHSRNLQSRINSYVS 524 P ++ + +GL + N+AL + + L + ++ Sbjct: 479 GPEGAPALAAGMASGLAADGNMALAAPGTALPGAVGAGEAAKLPAPGVAGLLEELEDKMA 538 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEI 554 + RL +I+I+EE+ A +L++W E Sbjct: 539 RSPQKRLEQLIDIDEEQVAAVLKRWLMREE 568 >gi|182679604|ref|YP_001833750.1| flagellar MS-ring protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182635487|gb|ACB96261.1| flagellar M-ring protein FliF [Beijerinckia indica subsp. indica ATCC 9039] Length = 547 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 195/556 (35%), Positives = 308/556 (55%), Gaps = 11/556 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + +Q+ + + + LG R++ LA V + + A +F++ P + LY L+ DV Sbjct: 1 MTVREQIERLWANLLKLGTKRLITLAVVGVSVFAMTGLAGYFLSRPALEVLYSGLDRQDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +RI+ AL EA+I F ++ +G+S+ V +AR+ LA +GLP +S N+G ELFDK+ S Sbjct: 61 SRIASALKEADIPFDVNADGNSVLVRFGETARARMLLAEKGLP-NSPNAGNELFDKLGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGE+ARTIQ + G+ AARVHIVMPD GSFR+ P+ASV++R Sbjct: 120 GLTSFMQEVTRVRALEGELARTIQLMHGVKAARVHIVMPDEGSFRRTRQPPSASVVVRME 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239 + +A+AIRHLVA+AVP + + +VTVL++ G LL + + + + +A+ Sbjct: 180 SNDDPSAAKAIRHLVASAVPGMTVEEVTVLNTEGVLLASGADTVDGAPSGMIMLEKAVSR 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 EI NI K L +LG+ NF+ +V A LN D +Q E +Y+PDSKVERSI +++ Q S+ Sbjct: 240 EIIDNIRKTLTPYLGLRNFQISVAARLNTDKRQTNETIYNPDSKVERSIHVTRQNQNSQN 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 S +S +VE+N+P + R +S E + K++E +NYEI++K + T Y ++ LS+ Sbjct: 300 STVQSPTSVERNLPQENARSDDGKQSTEESQKRDELTNYEISSKVVNTVSGGYGIDNLSV 359 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AV+VN+ L LG + + EI +V++A G + RGD + I+++DF++ Sbjct: 360 AVLVNRASLISSLGEKPTPDALAKQMNEIEMLVASAAGAHKERGDIVKISAVDFIDPSHE 419 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 S ++ R ++NA LV +L+ + GL A K + Sbjct: 420 LEPQPPPSIGEMFLRQSTNLVNAATILVVAILLIWFGLRP---------ATKAILANTRS 470 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 + D+ A + NL + S RL ++E +E Sbjct: 471 TATAIDLRDEEEFQALEDDDAPPALPVWSPPSEPNLIEDLTSTPRHTPQKRLEQIVEYDE 530 Query: 540 ERFAKILRKWARSEIE 555 ++ A +L++W E Sbjct: 531 QQAAAVLKQWIHQGEE 546 >gi|288960029|ref|YP_003450369.1| flagellar M-ring protein [Azospirillum sp. B510] gi|288912337|dbj|BAI73825.1| flagellar M-ring protein [Azospirillum sp. B510] Length = 553 Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 160/553 (28%), Positives = 279/553 (50%), Gaps = 11/553 (1%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 ++ +LG R+ + V L+ I F+ +++P + LY +L+ ++ I+ L Sbjct: 3 NLLQTLRNLGPARLAAIGGVGLLLIGFFVYLTTRLSTPEMELLYAELQPTEAAAIAKKLE 62 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 EA + F + +G+ I VP+ VG R+ +AAQGLP S + GYELFDK FG TSFMQ Sbjct: 63 EAKVPFSVDKSGTKIMVPADQVGPMRMRMAAQGLP-SGGSVGYELFDKGEGFGATSFMQN 121 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYK 186 I +RALEGE+ART+Q+++G+ ARVH+V+P F + TASV ++ + Sbjct: 122 INHLRALEGEMARTVQTLNGVQQARVHLVLPKRELFARQQNPATASVFLKLRPGAQLSRE 181 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQAIQHEIEM 243 + +AI+ L+AA+VPNLD ++++D GKLL T ++ ++ + QA + + Sbjct: 182 NIQAIQQLIAASVPNLDPNRISIVDDKGKLLARGTGSDTAEAMMASAEEKKQAYEGRLAR 241 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 I L LG R+ V A+L+ D + ++DPDS+V RS + ++ S P Sbjct: 242 TIEDLLGRTLGYGKVRAEVSADLDFDRITTQSEIFDPDSQVVRSTQTVNESNESSDRDPL 301 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 + VTV+QN+P P S +++ EE NYEI + + ++ ++ RLS+AV+V Sbjct: 302 APVTVDQNLPTAQSSSSASPLSSNKSNRAEETINYEITKTTKSHVRESGQVRRLSVAVLV 361 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 + A Q + D + I +V +A G+++ RGD++ + +M F + Sbjct: 362 DGTYQLSKDAPPAYQPRSDQEIESIKALVRSAVGLDAVRGDSLEVINMRFWSPEDDIQKP 421 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL--RRLHNIDDAKKGEVGG-KSIL 480 ++ FM + + +V + +L+ L + L R + ++ E+ + Sbjct: 422 DEL-FMGMTKDDLFRIAEMVVLGIVAVLIILLVIRPLIARAFEKAEMQEEDEMDRLLTDQ 480 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 + P + A TG + D +AL+++ D +R+ V S ++ +++ + E Sbjct: 481 AGMPAALAAPTGALAQD-LALEAAQADEELEQMIDINRVEGRVRASSLRKVGEIVDKHPE 539 Query: 541 RFAKILRKWARSE 553 ILR W E Sbjct: 540 EAVSILRNWLYQE 552 >gi|319898649|ref|YP_004158742.1| flagellar M-ring protein [Bartonella clarridgeiae 73] gi|319402613|emb|CBI76158.1| Flagellar M-ring protein [Bartonella clarridgeiae 73] Length = 557 Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 212/558 (37%), Positives = 331/558 (59%), Gaps = 14/558 (2%) Query: 3 ILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 ++D+ L F S LG R++ L + L + + F++ P Y+ LYV L Sbjct: 1 MIDKFLAFLSSSGNALHKLGAKRLIALGIIGLTLFGTILFSSFYLTRPVYETLYVGLSRD 60 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 DVNR+ +AL E I F +S +GS++ VP +AR+ LA +GLP+S+ N+GYELFD + Sbjct: 61 DVNRMGMALGEVGIAFDVSADGSTVQVPVGQAEQARMFLAEKGLPTSN-NAGYELFDNMG 119 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178 S GLTSFMQEITR RALEGEIARTIQ + G+ AARVHIV+PD GSFRK +PTASV+IR Sbjct: 120 SLGLTSFMQEITRQRALEGEIARTIQVVQGVKAARVHIVLPDKGSFRKANQKPTASVVIR 179 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL-SIVQAI 237 +SA++IR LVAAAVP+L+ VTV+D+ G+LL + N + S+ Q + Sbjct: 180 TNGGFAVESAQSIRQLVAAAVPSLEASSVTVMDTRGQLLASGVDAMNGTSMMMASLEQQV 239 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 +I+ NI K L +LG+D+F+++V L+ D +Q E V+DP+S+V RS+R +D S Sbjct: 240 ASQIDANIRKQLVPYLGLDHFQTSVQVVLDTDRRQTNETVFDPESQVVRSVRSVRDQADS 299 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 + ++ AV VEQN+P RS + D++EE +NYEIN+K+I+T D Y +++L Sbjct: 300 QNNRNSDAVGVEQNIPQEEIANGSGERSTDKKDRREETTNYEINSKTISTVSDGYSVKKL 359 Query: 358 SIAVVVNKGRLTEVLG-RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 ++A+VV++ RLT + + ++ + I ++V+ A G++ +RGD I +T++DF+ + Sbjct: 360 AVAIVVDRARLTLPDSTKPTSESALNEEINRIQQMVATAAGLDPKRGDIINVTAVDFIGH 419 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476 + VQ+ +LSR+ + +IN + ++ LL+ FLG+ L R + + KK Sbjct: 420 TESDMIPVQMPLWKLLSRYTSALINGVALVIAVLLILFLGVRPLMR--EMREGKKALENS 477 Query: 477 KSILSPPPISSAVTTGLMPNDNIA-LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 K+ ++ A+ N + + ++ D NL++R+ RL MI Sbjct: 478 KNAMADLENIPALEHQYQANAEFSGITGTSDDTHDALHNLRNRMRVP----PQNRLEQMI 533 Query: 536 EINEERFAKILRKWARSE 553 ++EERFA +LR+W Sbjct: 534 AMDEERFAGVLREWINDT 551 >gi|78067882|ref|YP_370651.1| flagellar MS-ring protein [Burkholderia sp. 383] gi|77968627|gb|ABB10007.1| Flagellar FliF M-ring protein [Burkholderia sp. 383] Length = 587 Score = 451 bits (1161), Expect = e-124, Method: Composition-based stats. Identities = 135/562 (24%), Positives = 232/562 (41%), Gaps = 35/562 (6%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + + + L + + + A + +P Y LY L D I A Sbjct: 45 FAERIPGISRMKGNPKLPFLIAVAFAVAVITALVLWSRAPDYRVLYSNLSDRDGGAIIAA 104 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L +AN+ ++ +D G +I VPS+ V + R+ LAA GLP S G+EL D FG++ F Sbjct: 105 LQQANVPYKFADAGGAILVPSNQVHETRLKLAAMGLPKGGS-VGFELMD-NQKFGISQFA 162 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 ++I RALEGE+ RTI+SI+ + ARVH+ +P F + P+ASV + V Sbjct: 163 EQINYQRALEGELQRTIESINAVRGARVHLAIPKPSVFVRDKEAPSASVFVDLYPGRVLD 222 Query: 187 --SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN 244 +AI +V++ VP++ +VT++D G LLT + L VQ ++H + Sbjct: 223 EGQVQAITRMVSSGVPDMPAKNVTIVDQDGNLLTQTASASGLDASQLKYVQQVEHNTQKR 282 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 I+ LA G N RS V A+L+ + Y P+ ++S S+ + Sbjct: 283 IDAILAPIFGTGNARSQVSADLDFSKIEQTSESYGPNGNPQQSAIRSQQTSSATELAQGG 342 Query: 305 AVTVE---QNMPH-------VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 A V N P V+ P++ +D+K++ +NYE++ + Sbjct: 343 ASGVPGALSNTPPQPASAPIVAGNGQNAPQTTPVSDRKDQTTNYEVDKTIRHLEQPMGSV 402 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 +RLS+AVVVN + + G Q + LA++ ++V A G + +RGD++ + + F Sbjct: 403 KRLSVAVVVNYQPVADAKGHVTMQPLPPAKLAQVEQLVKDAMGYDEKRGDSVNVVNSAFS 462 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 + D+++ + L A+RR Sbjct: 463 TVSDPYADLPWWRQPDMIAMAKEAAKWLGIAAAAAALYFMFVRPAMRR------------ 510 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL--- 531 + PP P D++ALD S + + + L Sbjct: 511 ------AFPPPEPVAPALAAPEDSVALDGLPGPEKSEEPDALLLGFESEKNRYERNLDYA 564 Query: 532 LHMIEINEERFAKILRKWARSE 553 + + + A +++ W E Sbjct: 565 RTIARQDPKIVATVVKNWVSDE 586 >gi|240137205|ref|YP_002961674.1| Flagellar M-ring protein FliF [Methylobacterium extorquens AM1] gi|240007171|gb|ACS38397.1| Flagellar M-ring protein FliF [Methylobacterium extorquens AM1] Length = 559 Score = 451 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 190/560 (33%), Positives = 308/560 (55%), Gaps = 7/560 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M +Q + + + LG R++ L V L+ + ++++ P + LY L DV Sbjct: 1 MFGREQAERLWSNIVDLGARRLIALGLVGLLVFLGVGVGAYYLSRPAQEMLYTGLSREDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +RI L + I F +S +G+++ V +AR+ LA +GLP SS SGYELF+ + S Sbjct: 61 SRIGGVLKDNGIPFDVSSDGTAVLVSFGHTAQARMLLAEKGLPQSSK-SGYELFNDLGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 G+TSFMQE+TRVRALEGEIARTIQ + G+ AARVH+V+PD GSFR+ +ASV++R Sbjct: 120 GMTSFMQEVTRVRALEGEIARTIQGMKGVRAARVHLVLPDRGSFRRDQQPASASVVVRTE 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK-LLTANEMERNILGKSLSIVQAIQH 239 A+AIR LVA+A+P + VTV+ S G LL ++ GK ++ +++ Sbjct: 180 PADDTSGAQAIRQLVASAIPGMKPDRVTVIGSEGTVLLAGDDAGTAPTGKMATLEKSVSR 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 E++ NI + LA +LGV NF +V +LN D E +++PD +VERS+R ++++ ++ Sbjct: 240 EMQDNIRRTLAPYLGVGNFEISVATQLNTDKTSTNETIFNPDQRVERSVRSVRESENAQN 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + + ++N+P R +S + KKE+ +NYEI+ K++ T D Y + RLS+ Sbjct: 300 RNSQRPTSAQENLPDQRTRSDGNDQSSNESSKKEDLTNYEISQKTVQTVSDGYAIRRLSV 359 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AV+VN+ RLT + G D+ +D +AEI ++V +A G + RGDTI + ++ F+ + Sbjct: 360 AVLVNRSRLTALAGPD-DKASLDKQIAEIEELVGSAAGFSKERGDTIKVAAVGFVNDGQP 418 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNIDDAKKGEVGGKS 478 +S D++ + T+INA LV L+ + GL LR + + + EV + Sbjct: 419 MEPVPPLSLTDVMMKQSGTLINAATILVVAGLLIWFGLRPALRAILATPETAQSEVAALA 478 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR---NLQSRINSYVSKQSDLRLLHMI 535 P +A T + AL S + S L + +++ RL +I Sbjct: 479 GPEGAPALAADGTMALAAPGAALPGSGEAAKLPSPGVAGLLEELEDKMARSPQKRLEQLI 538 Query: 536 EINEERFAKILRKWARSEIE 555 +I+EE+ A +L++W E Sbjct: 539 DIDEEQVAAVLKRWLMREEA 558 >gi|170696757|ref|ZP_02887869.1| flagellar M-ring protein FliF [Burkholderia graminis C4D1M] gi|170138336|gb|EDT06552.1| flagellar M-ring protein FliF [Burkholderia graminis C4D1M] Length = 600 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 143/565 (25%), Positives = 250/565 (44%), Gaps = 33/565 (5%) Query: 9 QFFKSGTSLGRTR---ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 F + + L + R L + + + + + +P Y LY L D I Sbjct: 48 NFGQRLSGLAQMRGNPRAPLIFAVALLVAIVAGLFLWSRAPDYKVLYSNLSDRDGGAIIT 107 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 AL +ANI ++ S+ G +I VPS V + R+ LA+QGLP S S G+EL D FG++ F Sbjct: 108 ALQQANIPYKFSEAGGAILVPSEQVHEMRLRLASQGLPKSGS-VGFELMD-NQKFGISQF 165 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 ++I RALEGE+ RTI+S+S + +ARVH+ +P F + P+ASV++ Sbjct: 166 AEQINYQRALEGELERTIESVSSVKSARVHLAIPKPSVFVRDKEAPSASVLVNLYPGRAL 225 Query: 186 KSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEM 243 + AI H+V++AVP + + VT+LD G LLT + + L Q I+ + Sbjct: 226 DEGQVLAITHMVSSAVPEMPVKGVTILDQDGNLLTQPSVGGGLDASQLKYRQQIERSTQQ 285 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSE- 298 I+ LA G N S V A+++ + Y P+ RS + S + S+ Sbjct: 286 RIDAILAPLFGSGNAHSQVSADIDFSRSEQTSENYGPNGNPQQAAIRSQQSSTATEMSQG 345 Query: 299 ---------TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 ++QP + N P + V + +D+K+ +NYE++ Sbjct: 346 GASGVPGALSNQPPQPASAPINAPAGASGGV---TTTPVSDRKDMTTNYELDKTVRHLEQ 402 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 ++RLS+AVVVN R+ + G + Q LA++N++V A G +++RGD++ + Sbjct: 403 PMGGIKRLSVAVVVNYLRVVDAKGHATMQPVTADKLAQVNQLVKDAMGFDAQRGDSVNVV 462 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 + F N+ D+L+ + + V L + ALRR + Sbjct: 463 NSPFTTALDPNADLPWWRTPDMLALYKQIATYLGIGAVALFLYFVMVKPALRRAFPPPEP 522 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 + P P + G+ + ++ ++ + LQ+ N+ + +L Sbjct: 523 ------VVAAALPSPDEPILLDGIPAAER--AGNAALEMDNGDAELQALENAKHKYERNL 574 Query: 530 RLLH-MIEINEERFAKILRKWARSE 553 + + + A +++ W E Sbjct: 575 EFARSIARQDPKIVATVVKNWVTDE 599 >gi|163850071|ref|YP_001638114.1| flagellar MS-ring protein [Methylobacterium extorquens PA1] gi|163661676|gb|ABY29043.1| flagellar M-ring protein FliF [Methylobacterium extorquens PA1] Length = 559 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 189/560 (33%), Positives = 308/560 (55%), Gaps = 7/560 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M +Q + + + LG R++ L V L+ + ++++ P + LY L DV Sbjct: 1 MFGREQAERLWSNIVDLGARRLIALGLVGLLVFLGVGVGAYYLSRPAQEMLYTGLSREDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +RI L + I F +S +G+++ V +AR+ LA +GLP SS SGYELF+ + S Sbjct: 61 SRIGGVLKDNGIPFDVSSDGTAVLVSFGHTAQARMLLAEKGLPQSSK-SGYELFNDLGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 G+TSFMQE+TRVRALEGEIARTIQ + G+ AARVH+V+PD GSFR+ +ASV++R Sbjct: 120 GMTSFMQEVTRVRALEGEIARTIQGMKGVRAARVHLVLPDRGSFRRDQQPASASVVVRTE 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK-LLTANEMERNILGKSLSIVQAIQH 239 A+AIR LVA+A+P + VTV+ S G LL ++ GK ++ +++ Sbjct: 180 PADDTSGAQAIRQLVASAIPGMKPDRVTVIGSEGTVLLAGDDAGTAPTGKMATLEKSVSR 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 E++ NI + LA +LGV NF +V +LN D E +++PD +VERS+R ++++ ++ Sbjct: 240 EMQDNIRRTLAPYLGVGNFEISVATQLNTDKTSTNETIFNPDQRVERSVRSVRESENAQN 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + + ++N+P R +S + KKE+ +NYEI+ K++ T D Y + RLS+ Sbjct: 300 RNSQRPTSAQENLPDQRTRSDGNDQSSNESSKKEDLTNYEISQKTVQTVSDGYAIRRLSV 359 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AV+VN+ RLT + G D+ +D +AEI ++V +A G + RGDTI + ++ F+ + Sbjct: 360 AVLVNRSRLTALAGPD-DKASLDKQIAEIEELVGSAAGFSKERGDTIKVAAVGFVNDGQP 418 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNIDDAKKGEVGGKS 478 +S D++ + T+INA LV L+ + GL LR + + + EV + Sbjct: 419 MEPVPPLSLTDVMMKQSGTLINAATILVVAGLLIWFGLRPALRAILATPETAQSEVAALA 478 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR---NLQSRINSYVSKQSDLRLLHMI 535 P +A T + AL S + + L + +++ RL +I Sbjct: 479 GPEGAPALAADGTMALAAPGAALPGSGEAAKLPAPGIAGLLEELEDKMARSPQKRLEQLI 538 Query: 536 EINEERFAKILRKWARSEIE 555 +I+EE+ A +L++W E Sbjct: 539 DIDEEQVAAVLKRWLMREEA 558 >gi|218528674|ref|YP_002419490.1| flagellar MS-ring protein [Methylobacterium chloromethanicum CM4] gi|218520977|gb|ACK81562.1| flagellar M-ring protein FliF [Methylobacterium chloromethanicum CM4] Length = 559 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 189/560 (33%), Positives = 308/560 (55%), Gaps = 7/560 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M +Q + + + LG R++ L V L+ + ++++ P + LY L DV Sbjct: 1 MFGREQAERLWSNIVDLGARRLIALGLVGLLVFLGVGVGAYYLSRPAQEMLYTGLSREDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +RI L + I F +S +G+++ V +AR+ LA +GLP SS SGYELF+ + S Sbjct: 61 SRIGGVLKDNGIPFDVSSDGTAVLVSFGHTAQARMLLAEKGLPQSSK-SGYELFNDLGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 G+TSFMQE+TRVRALEGEIARTIQ + G+ AARVH+V+PD GSFR+ +ASV++R Sbjct: 120 GMTSFMQEVTRVRALEGEIARTIQGMKGVRAARVHLVLPDRGSFRRDQQPASASVVVRTE 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK-LLTANEMERNILGKSLSIVQAIQH 239 A+AIR LVA+A+P + VTV+ S G LL ++ GK ++ +++ Sbjct: 180 PADDTSGAQAIRQLVASAIPGMKPDRVTVIGSEGTVLLAGDDAGTAPTGKMATLEKSVSR 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 E++ NI + LA +LGV NF +V +LN D E +++PD +VERS+R ++++ ++ Sbjct: 240 EMQDNIRRTLAPYLGVGNFEISVATQLNTDKTSTNETIFNPDQRVERSVRSVRESENAQN 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + + ++N+P R +S + KKE+ +NYEI+ K++ T D Y + RLS+ Sbjct: 300 RNSQRPTSAQENLPDQRTRSDGNDQSSNESSKKEDLTNYEISQKTVQTVSDGYAIRRLSV 359 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AV+VN+ RLT + G D+ +D +AEI ++V +A G + RGDTI + ++ F+ + Sbjct: 360 AVLVNRSRLTALAGPD-DKASLDKQIAEIEELVGSAAGFSKERGDTIKVAAVGFVNDGQP 418 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNIDDAKKGEVGGKS 478 +S D++ + T+INA LV L+ + GL LR + + + EV + Sbjct: 419 MEPVPPLSLTDVMMKQSGTLINAATILVVAGLLIWFGLRPALRAILATPETAQSEVAALA 478 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR---NLQSRINSYVSKQSDLRLLHMI 535 P +A T + AL S + + L + +++ RL +I Sbjct: 479 GPEGAPALAADGTMALAAPGAALPGSGEAAKLPAPGVAGLLEELEDKMARSPQKRLEQLI 538 Query: 536 EINEERFAKILRKWARSEIE 555 +I+EE+ A +L++W E Sbjct: 539 DIDEEQVAAVLKRWLMREEA 558 >gi|306841269|ref|ZP_07473980.1| flagellar M-ring protein FliF [Brucella sp. BO2] gi|306288671|gb|EFM60002.1| flagellar M-ring protein FliF [Brucella sp. BO2] Length = 542 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 211/533 (39%), Positives = 316/533 (59%), Gaps = 8/533 (1%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92 + + ++ P Y+ LYV L DVNR+ +AL EA I F + +GSSI VP Sbjct: 2 MGAILYTSIYLGRPSYETLYVGLSRDDVNRMGLALGEAGIPFDVKSDGSSILVPIGKAEN 61 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 AR++LA +GLP+S+ N+GYELFD + S GLTSFMQEITRVRALEGEIARTIQ+I G+ AA Sbjct: 62 ARMYLAEKGLPTSN-NAGYELFDNMGSLGLTSFMQEITRVRALEGEIARTIQAIRGVKAA 120 Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDS 212 RVHIV+ + GSFR+ +P+ASV+IRA +SA++IR LVAAAVP+LD VTVLD+ Sbjct: 121 RVHIVLAEKGSFRRGDQKPSASVVIRAEGGFSAESAQSIRQLVAAAVPSLDASSVTVLDT 180 Query: 213 TGKLL-TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ 271 G LL +A E + S+ Q + ++ +I KALA +LG+ +F+++V A L+ D + Sbjct: 181 NGHLLASAGEGANGAALMTASLEQQVASHVDDSIRKALAPYLGLGHFQTSVQAALDTDRR 240 Query: 272 QIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDK 331 Q +E YDP+S+VERS+R+ +++ S ++ ++A VEQN+P + S E TD+ Sbjct: 241 QTKETTYDPESRVERSVRVVRESGDSRNNRNDNATGVEQNIPQEQIQNRNGESSTEKTDR 300 Query: 332 KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK-IDSYLAEINK 390 +EE +NYE+N+K+++T D Y ++RLSIAVV+++ RL + G + +D + +I Sbjct: 301 REELTNYEVNSKTVSTVSDGYSIKRLSIAVVIDQARLLQTAGTTPPPANFVDQQITKIRD 360 Query: 391 IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL 450 +V+ A G+N+ RGD I +T+++FL+ + V + D L R + NAL L Sbjct: 361 LVATAAGLNANRGDVINVTAVNFLDPAGADMEPVSAPWTDTLLRQSGSYANALAILAAVG 420 Query: 451 LVTFLGLHALRRLHNIDDA--KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 L+ + GL L R N+ A + + +P I SA + G I ++ D Sbjct: 421 LLIWFGLRPLLRDQNVKPAGTEVAIREAGEVATPNFIGSAESVGEGAQAVIGGPAAYADQ 480 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQH 561 S S + + + LRL MIE++EER A +L++W R Sbjct: 481 MKTS---LSDLRQRMRMPAKLRLEQMIEMDEERVAAVLKQWIHETASGREADP 530 >gi|254504967|ref|ZP_05117118.1| flagellar M-ring protein FliF [Labrenzia alexandrii DFL-11] gi|222441038|gb|EEE47717.1| flagellar M-ring protein FliF [Labrenzia alexandrii DFL-11] Length = 548 Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 214/563 (38%), Positives = 323/563 (57%), Gaps = 22/563 (3%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + + + LG R++ LA + L I A F+++ P LY L DV Sbjct: 1 MPGREHAEKLWANLMELGMRRLIALALIGLATIATVGAGAFYLSRPETTPLYTGLTGEDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +RI AL +A I F +S G ++ V KAR+ LA +GLP +NSGYELFD + S Sbjct: 61 SRIGSALRDAGIPFDVSSEGDAVMVSHGQTAKARMLLAEKGLPR-GANSGYELFDDLGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGE+ARTIQ + GI AARVHIV+P+ GSFR+ P+ASV+IR+ Sbjct: 120 GLTSFMQEVTRVRALEGELARTIQLMKGIRAARVHIVLPEKGSFRRDQQPPSASVVIRSD 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQAIQH 239 P ++A+AIRHLVAA VP ++ VTVLD+TG +L A + + G+ ++ A+ + Sbjct: 180 IPDDVRTADAIRHLVAAGVPGMEAAKVTVLDTTGGILAAGKDPTKASAGQMATLETAVSN 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 I+ N+ K L +LG+DNF+ +V A+LN D + I E ++DPDS++ERS+R ++ + +E Sbjct: 240 RIQENVRKTLTPYLGLDNFQVSVAAKLNTDRKMIAETIFDPDSRIERSVRTIRENENAEN 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 S + VT EQN+P + RSLE T+++EE NYEI++K I T+ D Y+++RLSI Sbjct: 300 SSAATPVTAEQNLPDENVEADGGERSLEETERREETVNYEISSKRIETSQDGYRVDRLSI 359 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AV+V++ RL LG S Q +I+ + EI +V+++ G+ RGD + I+ +DF++ Sbjct: 360 AVLVDRTRLAASLGGSPTQSQIEEQVREIEALVASSAGVTEERGDLVKISVVDFVDGGRD 419 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA----LRRLHNIDDAKKGEVG 475 + + L R +INAL L ++LV + GL L + + A+ E+G Sbjct: 420 LEPIPPIGVTEYLLRQSGNIINALAILTVSMLVIWFGLRPAVAALVPQVSSEQAEMAEIG 479 Query: 476 --GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 + + T LMP D+ +L +NS +K + +L Sbjct: 480 LLPEGLEDAADAMDGETGFLMPPDH--------------SDLLHDLNSKRNKSALKKLES 525 Query: 534 MIEINEERFAKILRKWARSEIED 556 ++E NEE+ A ILR+W Sbjct: 526 LLEFNEEQSAAILRQWLYDTERT 548 >gi|254559216|ref|YP_003066311.1| flagellar M-ring protein FliF [Methylobacterium extorquens DM4] gi|254266494|emb|CAX22258.1| Flagellar M-ring protein FliF [Methylobacterium extorquens DM4] Length = 559 Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 190/560 (33%), Positives = 311/560 (55%), Gaps = 7/560 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M +Q + + + LG R++ L V L+ + ++++ P + LY L DV Sbjct: 1 MFGREQAERLWSNIVDLGARRLIALGLVGLLVFLGVGVGAYYLSRPAQEMLYTGLSREDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +RI L + I F +S +G+++ V +AR+ LA +GLP SS SGYELF+ + S Sbjct: 61 SRIGGVLKDNGIPFDVSSDGAAVLVSFGHTAQARMLLAEKGLPQSSK-SGYELFNDLGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 G+TSFMQE+TRVRALEGEIARTIQ + G+ AARVH+V+PD GSFR+ +ASV++R Sbjct: 120 GMTSFMQEVTRVRALEGEIARTIQGMKGVRAARVHLVLPDRGSFRRDQQPASASVVVRTE 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK-LLTANEMERNILGKSLSIVQAIQH 239 A+AIR LVA+A+P + VTV+ S G LL ++ GK ++ +++ Sbjct: 180 PADDTSGAQAIRQLVASAIPGMKPDRVTVIGSEGTVLLAGDDAGTAPTGKMATLEKSVSR 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 E++ NI + LA +LGV NF +V +LN D E +++PD +VERS+R ++++ ++ Sbjct: 240 EMQDNIRRTLAPYLGVGNFEISVATQLNTDKTSTNETIFNPDQRVERSVRSVRESENAQN 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + + ++N+P R +S + KKE+ +NYEI+ K++ T D Y + RLS+ Sbjct: 300 RNSQRPTSAQENLPDQRTRSDGNDQSSNESSKKEDLTNYEISQKTVQTVSDGYAIRRLSV 359 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AV+VN+ RLT + G D+ +D +AEI ++V +A G + RGDTI + ++ F+ + Sbjct: 360 AVLVNRSRLTALAGPD-DKASLDKQIAEIEELVGSAAGFSKERGDTIKVAAVGFVNDGQP 418 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNIDDAKKGEVGGKS 478 +S D++ + T+INA LV L+ + GL LR + + + EV + Sbjct: 419 MEPVPPLSLTDVMMKQSGTLINAATILVVAGLLIWFGLRPALRAILATPETAQSEVAALA 478 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR---NLQSRINSYVSKQSDLRLLHMI 535 L P+ +A T + AL S++ + L + +++ RL +I Sbjct: 479 GLEGAPVLAADGTMALAAPGAALPGSSEAAKLPAPGVAGLLEELEDKMARSPQKRLEQLI 538 Query: 536 EINEERFAKILRKWARSEIE 555 +I+EE+ A +L++W E Sbjct: 539 DIDEEQVAAVLKRWLMREEA 558 >gi|323139667|ref|ZP_08074709.1| flagellar M-ring protein FliF [Methylocystis sp. ATCC 49242] gi|322395099|gb|EFX97658.1| flagellar M-ring protein FliF [Methylocystis sp. ATCC 49242] Length = 565 Score = 448 bits (1153), Expect = e-123, Method: Composition-based stats. Identities = 195/554 (35%), Positives = 311/554 (56%), Gaps = 6/554 (1%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 +D++ + +LG ++ L + + + + ++++ P ++ LY L+ DV+RI Sbjct: 13 MDRITLLLDNLKALGTRKLAALGLTFALVVAIVSISAYYLSRPTFEVLYAGLDREDVSRI 72 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L I F I+ G+++SVP +AR+ LA +GLP S+N+GYELFDKV + GLT Sbjct: 73 GSVLKSTGIPFDINTEGNAVSVPYGQTAQARMLLAERGLPQ-SANAGYELFDKVGALGLT 131 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 SFMQE+TRVRALEGE+ARTIQ I G+ AARVHIVMPD GSFR+ P+ASV+IR P Sbjct: 132 SFMQEVTRVRALEGELARTIQLIRGVKAARVHIVMPDEGSFRRAKQPPSASVIIRTEGPD 191 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEI 241 +A+AIRHLVA+++P +++ VTVL++ G +L++++ + K+L++ + IQ +I Sbjct: 192 DTSAAQAIRHLVASSLPGMNVDQVTVLNTDGMILSSSDGDATDAVPVKTLTLEKNIQKDI 251 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + NI + L +L + NF+ V A +N D +QI E +YDPDSKVERS+R K++ RS+ S Sbjct: 252 QDNIRRTLTPYLRLPNFQVTVRARVNTDRKQINETIYDPDSKVERSVRTVKESSRSQDSS 311 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 +A TV N+P +S + K EE +NYE+++K++ T Y +E LS+AV Sbjct: 312 SAAATTVTNNIPQNGVNNADGKQSNDENKKNEELTNYEMSSKTVTTVSGGYNIEHLSVAV 371 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 ++N+ E Q ID L EI +++S+A G+ RGD + +T++DF+ N+ + Sbjct: 372 LINRSAFAEPNKEPPKQEAIDRQLKEIEQLISSAAGLKKERGDALKVTAVDFMFNEHEMT 431 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSIL 480 F+ +L H +++N + L LV GL RR L ++ E + Sbjct: 432 PVESPGFVAMLGSHLGSILNMIAALGIAALVVIFGLAPARRALLAESSTERTEPPPLIGM 491 Query: 481 SPPPISSAVTTGLMPND--NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 S + +A + I L I+ + +L +I+ + Sbjct: 492 GDQSFESPTFEAPTFDGIPGLAGATPGGAIAMSGPTLLEDISERRQDIARRKLEELIQND 551 Query: 539 EERFAKILRKWARS 552 E + A IL++W RS Sbjct: 552 EAQAAAILKQWMRS 565 >gi|302878299|ref|YP_003846863.1| flagellar M-ring protein FliF [Gallionella capsiferriformans ES-2] gi|302581088|gb|ADL55099.1| flagellar M-ring protein FliF [Gallionella capsiferriformans ES-2] Length = 566 Score = 448 bits (1152), Expect = e-123, Method: Composition-based stats. Identities = 133/557 (23%), Positives = 233/557 (41%), Gaps = 26/557 (4%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 F L + + L I I L + A + +P Y LY L D I +L + Sbjct: 15 FSRFEQLSAQQKMGLGVGIAALIALIVGAWMWGQTPDYRILYSNLSDRDGGAIIESLQQL 74 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI ++ +D G ++ +P+ V +AR+ LA+QGLP + G+EL + FG+T F +++ Sbjct: 75 NIPYKFADGGGALMIPADQVHEARLKLASQGLPKGGT-VGFELME-NQKFGITQFAEQVN 132 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE- 189 RALEGE+AR++QSI + +ARVH+ +P F K +P+ASV++ + SA+ Sbjct: 133 YQRALEGELARSVQSIGAVASARVHLAIPKPSVFIKEQQKPSASVVLTLHGGRLLDSAQV 192 Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMNIN 246 AI HL++++VP++ +VT++D G LL++ + + L VQ I+ I Sbjct: 193 TAIVHLISSSVPDMSAKNVTIVDQDGSLLSSLQDSNGLGLDANQLKYVQQIEQNYIKRIE 252 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS---KDAQRSETSQPE 303 L LG +N + V A ++ + Y P+ S S + Sbjct: 253 DILTPLLGANNVHAQVTANIDFARTEQTAETYKPNQNPADSSVRSLQNSETLNGSGLNAS 312 Query: 304 SAVTVEQNMPHVSDRKV----------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 N P V P + KE NYE++ T Sbjct: 313 GVPGALSNQPPVPATAPIVSAPPGATDPANAPKIDNLHKENTINYEVDRTISHTILPVGM 372 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 ++RLS+AVVVN + T+ G+ + + D+ A+I+ +V A G + RGD++ I + F Sbjct: 373 IKRLSVAVVVNNRKATDPKGKVSSKPLTDAEKAQIDNLVKDAVGFDKNRGDSLNIQNAAF 432 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 + + S DI+ + L+ L+V F + R A+ + Sbjct: 433 NDEKEALSELPWWKQADIIE-LAKLLAKYLIIAAVMLIVVFKIIKPAFRPLEPFHAETDD 491 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 + + P + + S + + Y + R Sbjct: 492 EEHVATVDHTPGEGEGEGEIATGAA----GTQHANEPGSEHYTPPVEPYEKNLNIAR--Q 545 Query: 534 MIEINEERFAKILRKWA 550 + + + + A +++ W Sbjct: 546 ITQQDPKIVASVIKDWV 562 >gi|209964124|ref|YP_002297039.1| flagellar MS-ring protein [Rhodospirillum centenum SW] gi|209957590|gb|ACI98226.1| flagellar M-ring protein FliF [Rhodospirillum centenum SW] Length = 556 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 152/551 (27%), Positives = 258/551 (46%), Gaps = 9/551 (1%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 F ++ +LG R+ + LV + LF+ +SP LY L +D I L Sbjct: 8 SFLQTLRNLGAVRLAAIGGATLVIVGLFVYMMSQWSSPGMSLLYSDLTPADGGAIVQQLE 67 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 + I ++ S +G+ I VPS VG+ R+ +A QGLP S N GYELF++ G TSFMQ Sbjct: 68 QQQIPYKASPDGTRIEVPSDQVGRVRMLMAQQGLP-SGGNVGYELFNQPEGLGTTSFMQN 126 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--K 186 I ++RALEGE++RT+Q++ + AAR+H+V+P F + TASV +R + + Sbjct: 127 IQQLRALEGELSRTVQTLQPVQAARIHLVLPKRELFSRQNQTATASVFVRLRPGASLGKE 186 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAIQHEIEM 243 AI+ LVAAAVP L+ V ++D G +L ++ + +L + A + + Sbjct: 187 QVLAIQTLVAAAVPQLEPDMVAIVDDKGNVLARGMGSDSQEAMLATAEEKKLAYEQRLTQ 246 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 + L+ +G R+ V AEL+ D +YDPDS+V RS + + + Sbjct: 247 TVEDLLSRTVGFGRVRAQVSAELDFDRITTNSEIYDPDSQVVRSTQTVNEQSEDQNRDGI 306 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 VTV N+P S T + EE NYEIN + ++ RLS+AV+V Sbjct: 307 DPVTVANNLPTADATNTASGLSSSKTSRAEESINYEINRTVKVHERETGQIRRLSVAVLV 366 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 + G S Q + ++ L ++ ++V +A G ++ RGDT+ + +M F +G Sbjct: 367 DGTYAAAEDGTSTYQPRPEAELDQLRRLVESAIGFDAARGDTVEVVNMRFATPDDL-AGL 425 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR-RLHNIDDAKKGEVGGKSILSP 482 + + + + +V + +LV L + L R + + E + Sbjct: 426 GEETIFGLPKEDVFRIAQTIVLAIVAILVILLVIKPLVARALDRTPQLEDEPDLLAGGDG 485 Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542 P + G + + +AL+++ + +R++ V S ++ ++E + E Sbjct: 486 VPQLAGPGGGALARE-LALEAAQANEELEQMIDINRVDGRVRASSLRKVGEIVEKHPEEA 544 Query: 543 AKILRKWARSE 553 I+R W E Sbjct: 545 VSIIRNWLYQE 555 >gi|121602745|ref|YP_989390.1| flagellar MS-ring protein [Bartonella bacilliformis KC583] gi|120614922|gb|ABM45523.1| flagellar M-ring protein FliF [Bartonella bacilliformis KC583] Length = 553 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 209/557 (37%), Positives = 322/557 (57%), Gaps = 15/557 (2%) Query: 3 ILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 +LD+ F S LG R++ L V + + + F++ P ++ LYV L Sbjct: 1 MLDKFFVFLSSSGSALYKLGAKRLIALGLVGVTLFGTILFSSFYLTRPSHETLYVGLSRD 60 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 DVNRI +AL EA I F +S +G S+ VP AR+ LA +GLP+S+ N+GYELFD + Sbjct: 61 DVNRIGMALGEAGIAFDVSSDGGSVQVPVGQAEHARMFLAEKGLPTSN-NAGYELFDNMG 119 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178 S GLTSFMQEITR RALEGEIARTIQ++ G+ AARVHIV+PD GSFR+ +PTASV+IR Sbjct: 120 SLGLTSFMQEITRQRALEGEIARTIQAVQGVKAARVHIVLPDKGSFRRANQKPTASVVIR 179 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQAI 237 +SA++IRHLVAAAVP+L+ VTV+D+ G++L + + S+ + Sbjct: 180 TDGGFSVESAQSIRHLVAAAVPSLEASSVTVMDTRGQMLASGVDAINGAPVVMASLEHQV 239 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 +I+ NI K L +LG+D+F+++V L+ D +QI E ++DP+S+V RSIR +D S Sbjct: 240 ASQIDANIRKQLVPYLGLDHFQTSVQVALDTDRRQINETIFDPESQVVRSIRSVRDQADS 299 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 + S+ AV VEQN+P S + D++EE +NYEIN+K I+T D Y +++L Sbjct: 300 QNSRNSDAVGVEQNIPQEEIANGSGETSTDKKDRREETTNYEINSKIISTVRDGYSVKKL 359 Query: 358 SIAVVVNKGRLTEVLGRSA-DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 +IA+VV++ RL G + + I+ + I ++VSAA G++ RGD I +T++DF+ + Sbjct: 360 AIAIVVDRARLVPANGETTVSEDFINDEVNRIQQMVSAAAGLDPNRGDIINVTAVDFIGH 419 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476 + ++ +SR+ V+N + ++ LL+ FLG+ L R + + +K G Sbjct: 420 NDADLTPIETPLWKSVSRYIPGVVNGVALVIAVLLILFLGVRPLMR--EMREGQKARNSG 477 Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536 ++ L+ A+ + + D + + + + RL MI+ Sbjct: 478 ENALAGLGAVPALDNQSQAAAGVGGVTKTND------DTLRDLRNRMRVPPQNRLEKMID 531 Query: 537 INEERFAKILRKWARSE 553 ++EERFA ILR+W Sbjct: 532 MDEERFAGILREWVNDT 548 >gi|118589973|ref|ZP_01547377.1| flagellar M-ring protein [Stappia aggregata IAM 12614] gi|118437470|gb|EAV44107.1| flagellar M-ring protein [Stappia aggregata IAM 12614] Length = 548 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 210/554 (37%), Positives = 313/554 (56%), Gaps = 12/554 (2%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + + + LG R++ LA + L I A ++++ P LY L+ DV Sbjct: 1 MPGREHAEKLWANLMELGVRRLVALALIGLATIATVGAGAYYLSRPEQTVLYTGLDGEDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 RI AL +A I F I+ G+++ V + KAR+ LA +GLP +NSGYELFD++ S Sbjct: 61 TRIGSALRDAGIPFDINSEGTAVMVSHAQTAKARMLLAEKGLPR-GANSGYELFDELGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGE+ARTIQ + GI AARVHIV+P+ GSFR+ P+ASV+IR+ Sbjct: 120 GLTSFMQEVTRVRALEGELARTIQLMKGIRAARVHIVLPEKGSFRRDQQPPSASVVIRSD 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL-SIVQAIQH 239 P ++A+AIRHLVAA VP + VTVLD++G +L A + L S+ A+ + Sbjct: 180 VPDDVRTADAIRHLVAAGVPGMQADKVTVLDTSGGILAAGKDPTKASAGQLASLETAVSN 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 I+ NI K L +LG+DNF+ +V AELN D + I E ++DPDS+ ERSIR ++ + ++ Sbjct: 240 RIQENIRKTLTPYLGLDNFQVSVAAELNTDRKTIAETIFDPDSRTERSIRTIRENENAQN 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 S + TVEQN+P RS E +++EE NYEI++K I T+ D Y+++RLSI Sbjct: 300 SSVSAPTTVEQNLPEEDVSADNGERSSEENERREETVNYEISSKRIETSQDGYRVDRLSI 359 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AV+V+K RL + LG Q ++ L EI +V+++ GI RGD + + +DF++ Sbjct: 360 AVLVDKSRLAQSLGGEPTQAQMQEQLTEIEALVASSAGIEKERGDLVKVAVVDFVDGGRA 419 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 +S + L R +INAL L ++LV + GL AK + Sbjct: 420 MEPIPPISITEYLMRQSGNIINALAILTVSMLVIWFGLRPAVAALVPQIAKPQVEMAELG 479 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR-NLQSRINSYVSKQSDLRLLHMIEIN 538 ++P V A+D + ++ +NS +K + +L ++E N Sbjct: 480 MTPETAEGTVE---------AVDGEQTFLMPPDHSDMLQDLNSRRNKSALRKLESLLEFN 530 Query: 539 EERFAKILRKWARS 552 EE+ A ILR+W Sbjct: 531 EEQSAAILRQWLYE 544 >gi|319403971|emb|CBI77559.1| Flagellar M-ring protein [Bartonella rochalimae ATCC BAA-1498] Length = 554 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 208/557 (37%), Positives = 324/557 (58%), Gaps = 15/557 (2%) Query: 3 ILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 +LD+ L F S LG R++ L V L + + F++ P Y+ LYV L Sbjct: 1 MLDKFLAFLSSSGNALHKLGVKRLIALGMVGLTLFGTILFSSFYLTRPIYEILYVGLSRD 60 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 DVNR+ +AL EA I F +S +GS++ VP +AR+ LA +GLP+S+ N+GYELFD + Sbjct: 61 DVNRMGMALGEAGIAFDVSSDGSTVQVPVGQAEQARMFLAEKGLPTSN-NAGYELFDNMG 119 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178 S GLTSFMQEITR RALEGEIARTIQ++ G+ AARVHIV+PD GSFRK +PTASV+IR Sbjct: 120 SLGLTSFMQEITRQRALEGEIARTIQAVQGLKAARVHIVLPDKGSFRKANQKPTASVVIR 179 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQAI 237 + + A++IR LVAAAVP+L+ VTV+D+ G+LL + + S+ Q + Sbjct: 180 TNSGFAVEFAQSIRQLVAAAVPSLEASSVTVMDTRGQLLASGVDAMNGASMMMASLEQQV 239 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 +I+ NI K L +LG+D+F+++V L+ D +Q E V+DP+S+V RS+R +D S Sbjct: 240 ASQIDANIRKQLVPYLGLDHFQTSVQVVLDTDRRQTNETVFDPESQVVRSVRSVRDQADS 299 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 + ++ AV VEQN+P RS + D++EE +NYEIN+K+I+T D Y +++L Sbjct: 300 QNNRNSDAVGVEQNIPQEEIANGGGERSTDKKDRREEITNYEINSKTISTVSDGYSVKKL 359 Query: 358 SIAVVVNKGRLTEVLG-RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 ++A+VV++ RL G + + ++ + I ++V+ A G++ +RGD I +T++DF+ N Sbjct: 360 AVAIVVDRARLVLPDGTKPTSENALNDEVNRIQQMVATAAGLDPKRGDIINVTAVDFVGN 419 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476 + VQ LSR+ + +IN + ++ L+ FLG+ L R + + KK Sbjct: 420 SEADMAPVQEPLWKSLSRYTSGLINGVALVIAVFLILFLGVRPLMR--EMREGKKALENS 477 Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536 ++ ++ A+ N + + + + + + RL MI Sbjct: 478 ENAVAGLGNIPALEHQYQDNAEFGGVTGTNN------DTLHNLRNRMRVPPQNRLEQMIA 531 Query: 537 INEERFAKILRKWARSE 553 ++EERFA +LR+W Sbjct: 532 MDEERFAGVLREWVHDT 548 >gi|319406987|emb|CBI80624.1| Flagellar M-ring protein [Bartonella sp. 1-1C] Length = 554 Score = 446 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 211/558 (37%), Positives = 324/558 (58%), Gaps = 17/558 (3%) Query: 3 ILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 +LD+ F S LG R++ L V L + + F++ P Y+ LYV L Sbjct: 1 MLDKFWVFLSSSGNALHKLGVKRLIALGMVGLTLFGTILFSSFYLTRPIYETLYVGLSRD 60 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 DVNR+ +ALSEA I F +S +G ++ VP +AR+ LA +GLP+S+ N+GYELFD + Sbjct: 61 DVNRMGMALSEAGIAFDVSSDGGTVQVPVGQAEQARMFLAEKGLPTSN-NAGYELFDNMG 119 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178 S GLTSFMQEITR RALEGEIARTIQ + G+ AARVHIV+PD GSFRK +PTASV+IR Sbjct: 120 SLGLTSFMQEITRQRALEGEIARTIQVVQGVKAARVHIVLPDKGSFRKANQKPTASVVIR 179 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQAI 237 + + A++IR LVAAAVP+L+ VTV+D+ G+LL + + S+ Q + Sbjct: 180 TNSSFSVEFAQSIRQLVAAAVPSLEASSVTVMDTRGQLLASGVDAMNGASMMMASLEQQV 239 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 +I+ NI K L +LG+D+F+++V L+ D +Q E V+DP+S+V RS+R +D S Sbjct: 240 ASQIDANIRKQLVPYLGLDHFQTSVQVVLDTDRRQTNETVFDPESQVVRSVRSVRDQADS 299 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 + ++ AV VEQN+P RS + D++EE +NYEIN+K+I+T D Y +++L Sbjct: 300 QNNRNSDAVGVEQNIPQEEIANGGGERSTDKKDRREEITNYEINSKTISTVSDGYSVKKL 359 Query: 358 SIAVVVNKGRLTEVLG-RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 ++A+VV++ RL G + + ++ + I ++V+ A G++ +RGD I +T++DF+ N Sbjct: 360 AVAIVVDRARLVLPDGTKPTSENALNDEVNRIQQMVATAAGLDPKRGDIINVTAVDFVGN 419 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476 + +Q LSR+ + +IN + ++ L+ FLG+ L R + + KK Sbjct: 420 SEADMAPIQEPLWKSLSRYTSGLINGVALVIAVFLILFLGVRPLMR--EMREGKKALENS 477 Query: 477 KSILSPPPISSAVTTGLMPNDNI-ALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 + ++ A+ N + +N D S+ RN + RL MI Sbjct: 478 ANAVAGLGNIPALEHQYQDNAEFGGVTGTNNDTLSNLRN-------RMRVPPQNRLEQMI 530 Query: 536 EINEERFAKILRKWARSE 553 ++EERFA +LR+W Sbjct: 531 AMDEERFAGVLREWVHDT 548 >gi|92116309|ref|YP_576038.1| flagellar MS-ring protein [Nitrobacter hamburgensis X14] gi|91799203|gb|ABE61578.1| flagellar M-ring protein FliF [Nitrobacter hamburgensis X14] Length = 540 Score = 446 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 146/552 (26%), Positives = 250/552 (45%), Gaps = 17/552 (3%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + LL F K LG +R++ + +V I F V +P L+ L V D + I Sbjct: 1 MQGLLAFLKG---LGPSRLMAMVAVTTALIGFFAFVIMRVTAPQMTTLFTDLSVEDSSGI 57 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L I + + ++G+ I VP V + R+ LA GLP GYE+FDK ++ G T Sbjct: 58 IKDLERQAIPYELRNDGAVIMVPKDKVTRLRMKLAEAGLPKGGG-VGYEIFDKSDALGTT 116 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 SF+Q I R+RALEGE++RTI++I I ARVH+V+PD F + +P+AS+++R Sbjct: 117 SFVQNINRLRALEGELSRTIKAIDRIQDARVHLVLPDRPLFSREAPQPSASIVLRVRGGL 176 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEM 243 + AIRHLVA+AV L V+++D TG+LL A + + Sbjct: 177 EPQQIRAIRHLVASAVNGLKPQRVSIVDETGQLLADGSATDADGTTGDERRTAFEKRMRN 236 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 + +++ +G R + A+ + + +DP+ +V RS + +++ S T+ Sbjct: 237 QVEAIVSSVVGSGRARVQLSADFDYNKITQTSDKFDPEGRVLRSSQTREES--SVTADNN 294 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 VTV +P P P + + + K EE +NYEI+ + + ++ R+S+AV+V Sbjct: 295 GQVTVNNELPGNQQSDNPSP-ARDQSKKSEETNNYEISRTTKTEVTEAGRVNRISVAVLV 353 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 + G+ + L I +V +A G + +RGD + + ++ F E Sbjct: 354 DGTYTKNDQGQMVYAERSKEQLDRIATLVRSAIGFDQKRGDQVEVVNLKFAEPPAAVPLA 413 Query: 424 VQVSFMDIL---SRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 + ++ VI+ V L+ L+VTF+ + L R + + Sbjct: 414 EPAGLLGMMALTKDDVMYVIDLAVMLLLGLVVTFMVIRPLVRRILASEPAPAGAAPSQL- 472 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 P P + G + + S+ + +++ V QS R+ + E N Sbjct: 473 -PAPADATAQAGATGQNLVPGGSATAQLID-----VAQVQGQVHAQSVHRVGELAERNPA 526 Query: 541 RFAKILRKWARS 552 A I+R+W Sbjct: 527 ETASIIRQWLAE 538 >gi|254239470|ref|ZP_04932792.1| Flagella M-ring outer membrane protein precursor [Pseudomonas aeruginosa 2192] gi|126192848|gb|EAZ56911.1| Flagella M-ring outer membrane protein precursor [Pseudomonas aeruginosa 2192] Length = 598 Score = 446 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 132/593 (22%), Positives = 255/593 (43%), Gaps = 67/593 (11%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F + + + R + L + + + A + P Y LY L D NR+ AL Sbjct: 27 LSFLDNLSEMTMLRQIGLLVGLAASVAIGFAVVLWSQQPDYKPLYGSLNGVDANRVVEAL 86 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + A+I +++ N ++ V + +G+AR+ +A+ G+ + SN G+E+ DK + G + FM+ Sbjct: 87 TAADIPYKVEPNSGALLVKADDLGRARMKVASAGVAPTDSNVGFEILDKEQALGTSQFME 146 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 R LEGE+ART+ S++ + AARVH+ +P F + +P+ASV++ + Sbjct: 147 ATNYRRGLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDDRKPSASVLVELYPGRSLEP 206 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIEM 243 AI +LVA +VP LD VTV+D G LL+ + E + GK + ++ + Sbjct: 207 SQVMAIVNLVATSVPELDKSQVTVVDQKGNLLSDQQELSELTMAGKQFDFTRRMEGLLTQ 266 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 ++ L LG +++ V A+++ + +Y+PD RS + + + R +S P+ Sbjct: 267 RVHNILQPVLGNGRYKAEVSADVDFSAVESTSEMYNPDQPALRSEQRNNEE-RQNSSGPQ 325 Query: 304 SAVTVEQNMPHVSDRKVPLPRSL---------------------------------ENTD 330 N P + Sbjct: 326 GVPGALSNQPPGPASAPQQATASAPADYVAPGQPLKDANGQTIIDPKTGKPELAPYPTDK 385 Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEIN 389 + + NYE++ T +L RLS+AVV++ + G + Q LA Sbjct: 386 RDQTTRNYELDRSISYTKQQQGRLRRLSVAVVLDDQMKVDAKTGEVSHQPWSADELARFT 445 Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALVF 445 ++V + G ++ RGD++++ + F Q ++ Q F DI+ + Sbjct: 446 RLVQDSVGYDASRGDSVSVINAPFAPAQAEEIDSIPFYSQPWFWDIVKQ----------- 494 Query: 446 LVGTLLVTFLGLHALRR-LHNIDDAKKGE--VGGKSILSPPPISSAVTTGLMPNDNIALD 502 ++G L + L LR L NI KG+ GG + + G + +D +++ Sbjct: 495 VLGVLFILVLVFGVLRPVLSNITGGGKGKSLAGGGGRDGDLALGESGLEGSLADDRVSIG 554 Query: 503 SSNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + + S + +++N+ + +++ + R A+++++W ++ Sbjct: 555 GPSSILLPSPTEGYDAQLNA---------IKNLVAQDPGRVAQVVKEWINADE 598 >gi|319409176|emb|CBI82820.1| Flagellar M-ring protein [Bartonella schoenbuchensis R1] Length = 555 Score = 446 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 213/556 (38%), Positives = 327/556 (58%), Gaps = 15/556 (2%) Query: 3 ILDQLLQFF----KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 +LD+LL F ++ LG R++ L V + + + F++ P Y+ LY+ L Sbjct: 1 MLDKLLAFLSSSGQALQKLGVKRLVALGLVGITLFGTILFSSFYLTRPSYETLYIGLSRD 60 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 DVNR+ VAL E I F +S +GSSI VP KAR+ LA +GLP+S+ N+GYELFD + Sbjct: 61 DVNRMGVALGETGIAFDVSSDGSSIQVPVGQAEKARMFLAEKGLPTSN-NAGYELFDNMG 119 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178 S GLTSFMQEITR RALEGEIARTIQ + G+ AARVHIV+PD GSFRK +PTASV+IR Sbjct: 120 SLGLTSFMQEITRQRALEGEIARTIQVVQGVKAARVHIVLPDKGSFRKANQKPTASVVIR 179 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQAI 237 +SA++IR LV+AAVP+L+ VTV+D+ G+LL + + + + Q + Sbjct: 180 TDGGFSAESAQSIRQLVSAAVPSLEASSVTVMDTRGQLLASGVDAANGASVRMALLEQQV 239 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 +I+ NI K L +LG+D+F+++V +L+ + QQI E V+DP+S+V RS+R +D S Sbjct: 240 ASQIDANIRKQLVPYLGLDHFQTSVQVDLDTNRQQINETVFDPESQVVRSVRSVRDQADS 299 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 + S+ AV VEQN+P RS + D++EE +NYEIN+K I+T D Y +++L Sbjct: 300 QNSRNNDAVGVEQNIPQEEIANGGGERSTDKKDRREETTNYEINSKIISTVKDGYSVKKL 359 Query: 358 SIAVVVNKGRLTEVLGRSAD-QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 ++A+VV++ RL G + D + I+ + I ++V+ A G++ +RGD I +T++DF+ Sbjct: 360 AVAIVVDRARLALAKGNNGDSESFINDEINRIQQMVATAAGLDPKRGDVINVTAVDFMGY 419 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476 + +Q LS + +T +N L +V LL+ FLG+ L R + G Sbjct: 420 SDKDLTPMQTPIWKSLSPYLSTFVNGLALVVAVLLILFLGVRPLMR--------EMREGQ 471 Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536 K++ + + + + ++ I + + + S + RL MIE Sbjct: 472 KALDNEQNALAGLQDVPALENQSNINGEFGGIAGAKDDTLNDLRSRMRVAPQNRLEKMIE 531 Query: 537 INEERFAKILRKWARS 552 I+E+RFA++LR+W Sbjct: 532 IDEQRFAEVLREWVND 547 >gi|91785611|ref|YP_560817.1| flagellar MS-ring protein [Burkholderia xenovorans LB400] gi|91689565|gb|ABE32765.1| Flagellar FliF M-ring protein [Burkholderia xenovorans LB400] Length = 600 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 138/531 (25%), Positives = 233/531 (43%), Gaps = 25/531 (4%) Query: 38 AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97 + +P Y LY L D I AL ANI ++ SD G +I VP+ V + R+ L Sbjct: 79 GLFLWSRAPDYKVLYSNLSDRDGGAIITALQAANIPYKFSDAGGAILVPAEQVHEMRLRL 138 Query: 98 AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 A+QGLP S S G+EL D FG++ F ++I RALEGE+ RT++SIS + +ARVH+ Sbjct: 139 ASQGLPKSGS-VGFELMD-NQKFGISQFAEQINYQRALEGELERTVESISSVKSARVHLA 196 Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGK 215 +P F + P+ASV++ + AI H+V++AVP++ + VT+LD G Sbjct: 197 IPKPSVFVRDKEAPSASVLVNLYPGRALDEGQVLAITHMVSSAVPDMPVKGVTILDQDGN 256 Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LLT + L Q I+ + I+ LA G N S V A+++ + Sbjct: 257 LLTQPSTGSGLDASQLKYRQQIERSTQQRIDAILAPLFGSGNAHSQVSADIDFSRSEQTS 316 Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLP----------RS 325 Y P+ +++ S+ + + A V + + + P + Sbjct: 317 ENYGPNGNPQQAAIRSQQSSSATEMSQGGASGVPGALSNQPPQPASAPINAPTGASGVTT 376 Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385 +D+K+ +NYE++ ++RLS+AVVVN R+ + G + Q L Sbjct: 377 TPVSDRKDSTTNYELDKTVRHLERPMGGIKRLSVAVVVNYLRVVDAKGHATMQPVTADKL 436 Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDI--LSRHFATVINAL 443 A++N++V A G ++ RGD++ + + F + N+ D+ L+R AT + Sbjct: 437 AQVNQLVKDAMGFDAARGDSVNVVNSPFTTDLDPNADLPWWRTPDMIALARQVATYLGIG 496 Query: 444 VFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDS 503 V L + ALRR + + P P + G+ + Sbjct: 497 A--VALFLYFVMVKPALRRAFPPPEP------VVAGALPSPDEPILLDGIPAAERAGAGG 548 Query: 504 SNQDIFSHSRNLQSRINSYVSKQSDLRLLH-MIEINEERFAKILRKWARSE 553 S+ L + NS + +L + + + A +++ W E Sbjct: 549 SSVAELESDSELLALENSKHKYERNLEFARNIARQDPKIVATVVKNWVSDE 599 >gi|70729030|ref|YP_258764.1| flagellar MS-ring protein [Pseudomonas fluorescens Pf-5] gi|68343329|gb|AAY90935.1| flagellar M-ring protein FliF [Pseudomonas fluorescens Pf-5] Length = 595 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 128/592 (21%), Positives = 247/592 (41%), Gaps = 66/592 (11%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y LY L D ++ L Sbjct: 25 LSFLENLSQMTMLRQVGLLVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDAKQVMDTL 84 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + A+I + + N ++ V + + +AR+ LAA G+ N G+E+ DK G + FM+ Sbjct: 85 ASADIPYTVEPNSGALLVKADDLSRARLKLAAAGVAPGDGNVGFEILDKEQGLGTSQFME 144 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 R LEGE+ARTI S++ + ARVH+ +P F + +P+ASV++ + + Sbjct: 145 ATRYRRGLEGELARTISSLNNVKGARVHLAIPKSSVFVRDERKPSASVLVELYSGRSLEP 204 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEM 243 AI +LVA +VP L+ VTV+D G LL+ + GK + ++ + Sbjct: 205 GQVMAIVNLVATSVPELNKSQVTVVDQKGNLLSDQAENSALTMAGKQFDYSRRLEGMLTQ 264 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 ++ L LG D +++ V A+++ + ++PD RS + + QRS ++ P+ Sbjct: 265 RVHNILQPVLGNDRYKAEVSADVDFSAVESTSEQFNPDQPALRSEQSVNE-QRSSSNGPQ 323 Query: 304 SAVTVEQNMPHVSDRKV----------------------------------PLPRSLENT 329 N P P+ + Sbjct: 324 GVPGALSNQPPAPASAPQTTGGATAAAGMVQPGQPLLDANGQQIMDPATGQPMLAPYPSD 383 Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN-KGRLTEVLGRSADQGKIDSYLAEI 388 +++ N+E++ T +L RLS+AVVV+ + ++ G ++ LA Sbjct: 384 KRQQSTKNFELDRSISHTKQQQGRLNRLSVAVVVDDQVKVNPANGETSRAPWSADELARF 443 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALV 444 ++V A G ++ RGD++++ ++ F + + Q F DI+ + Sbjct: 444 TRLVQDAVGFDASRGDSVSVINVPFSAERGEVIADIPFYSQPWFWDIVKQ---------- 493 Query: 445 FLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDS 503 ++G L + L LR L+NI K + G + ND ++L Sbjct: 494 -VLGVLFILVLVFGVLRPVLNNITGGGKNKELAGLGSDVELGGMGGLDGELGNDRVSLGG 552 Query: 504 SNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + S S +++N+ + ++ + R A+++++W ++ Sbjct: 553 PQSILLPSPSEGYDAQLNA---------IKSLVAEDPGRVAQVVKEWINADE 595 >gi|15596298|ref|NP_249792.1| flagellar MS-ring protein [Pseudomonas aeruginosa PAO1] gi|107100552|ref|ZP_01364470.1| hypothetical protein PaerPA_01001577 [Pseudomonas aeruginosa PACS2] gi|116049030|ref|YP_792168.1| flagellar MS-ring protein [Pseudomonas aeruginosa UCBPP-PA14] gi|296390533|ref|ZP_06880008.1| flagellar MS-ring protein [Pseudomonas aeruginosa PAb1] gi|12230924|sp|Q51463|FLIF_PSEAE RecName: Full=Flagellar M-ring protein gi|9947018|gb|AAG04490.1|AE004540_10 Flagella M-ring outer membrane protein precursor [Pseudomonas aeruginosa PAO1] gi|115584251|gb|ABJ10266.1| Flagella M-ring outer membrane protein precursor [Pseudomonas aeruginosa UCBPP-PA14] Length = 598 Score = 445 bits (1145), Expect = e-122, Method: Composition-based stats. Identities = 131/593 (22%), Positives = 255/593 (43%), Gaps = 67/593 (11%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F + + + R + L + + + A + P Y LY L D NR+ AL Sbjct: 27 LSFLDNLSEMTMLRQIGLLVGLAASVAIGFAVVLWSQQPDYKPLYGSLNGVDANRVVEAL 86 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + A+I +++ N ++ V + +G+AR+ +A+ G+ + +N G+E+ DK + G + FM+ Sbjct: 87 TAADIPYKVEPNSGALLVKADDLGRARMKVASAGVAPTDNNVGFEILDKEQALGTSQFME 146 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 R LEGE+ART+ S++ + AARVH+ +P F + +P+ASV++ + Sbjct: 147 ATNYRRGLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDDRKPSASVLVELYPGRSLEP 206 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIEM 243 AI +LVA +VP LD VTV+D G LL+ + E + GK + ++ + Sbjct: 207 SQVMAIVNLVATSVPELDKSQVTVVDQKGNLLSDQQELSELTMAGKQFDFTRRMEGLLTQ 266 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 ++ L LG +++ V A+++ + +Y+PD RS + + + R +S P+ Sbjct: 267 RVHNILQPVLGNGRYKAEVSADVDFSAVESTSEMYNPDQPALRSEQRNNEE-RQNSSGPQ 325 Query: 304 SAVTVEQNMPHVSDRKVPLPRSL---------------------------------ENTD 330 N P + Sbjct: 326 GVPGALSNQPPGPASAPQQATASAPADYVAPGQPLKDANGQTIIDPKTGKPELAPYPTDK 385 Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEIN 389 + + NYE++ T +L RLS+AVV++ + G + Q LA Sbjct: 386 RDQTTRNYELDRSISYTKQQQGRLRRLSVAVVLDDQMKVDAKTGEVSHQPWSADELARFT 445 Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALVF 445 ++V + G ++ RGD++++ + F Q ++ Q F DI+ + Sbjct: 446 RLVQDSVGYDASRGDSVSVINAPFAPAQAEEIDSIPFYSQPWFWDIVKQ----------- 494 Query: 446 LVGTLLVTFLGLHALRR-LHNIDDAKKGE--VGGKSILSPPPISSAVTTGLMPNDNIALD 502 ++G L + L LR L NI KG+ GG + + G + +D +++ Sbjct: 495 VLGVLFILVLVFGVLRPVLSNITGGGKGKSLAGGGGRDGDLALGESGLEGSLADDRVSIG 554 Query: 503 SSNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + + S + +++N+ + +++ + R A+++++W ++ Sbjct: 555 GPSSILLPSPTEGYDAQLNA---------IKNLVAQDPGRVAQVVKEWINADE 598 >gi|152984140|ref|YP_001349624.1| flagellar MS-ring protein [Pseudomonas aeruginosa PA7] gi|150959298|gb|ABR81323.1| flagellar M-ring protein FliF [Pseudomonas aeruginosa PA7] Length = 597 Score = 444 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 129/592 (21%), Positives = 253/592 (42%), Gaps = 66/592 (11%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F + + + R + L + + + A + P Y LY L D NR+ AL Sbjct: 27 LSFLDNLSEMTMLRQIGLLVGLAASVAIGFAVVLWSQQPDYKPLYGSLNGVDANRVVEAL 86 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + A+I +++ N ++ V + +G+AR+ +A+ G+ + +N G+E+ DK + G + FM+ Sbjct: 87 TAADIPYKVEPNSGALLVKADDLGRARMKVASAGVAPTDNNIGFEILDKEQALGTSQFME 146 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 R LEGE+ART+ S++ + AARVH+ +P F + +P+ASV++ + Sbjct: 147 ATNYRRGLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDDRKPSASVLVELYPGRSLEP 206 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIEM 243 AI +LVA +VP LD VTV+D G LL+ + E + GK + ++ + Sbjct: 207 SQVMAIVNLVATSVPELDKSQVTVVDQKGNLLSDQQELSELTMAGKQFDFTRRMEGLLTQ 266 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 ++ L LG +++ V A+++ + +Y+PD RS + + + R +S P+ Sbjct: 267 RVHNILQPVLGNGRYKAEVSADVDFSAVESTSEMYNPDQPALRSEQRNNEE-RQNSSGPQ 325 Query: 304 SAVTVEQNMPHVSDRKVPLPRS---------------------------------LENTD 330 N P + Sbjct: 326 GVPGALSNQPPGPATAPQQATAGAPADYVAPGQPLKDANGQTIIDPKTGKPELAPYPTDK 385 Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEIN 389 + + NYE++ T +L RLS+AVV++ + G + Q LA Sbjct: 386 RDQTTRNYELDRSISYTKQQQGRLRRLSVAVVLDDQMKVDAKTGEVSHQPWSADELARFT 445 Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALVF 445 ++V + G ++ RGD++++ + F Q ++ Q F DI+ + Sbjct: 446 RLVQDSVGYDASRGDSVSVINAPFAPAQAEEIDSIPFYSQPWFWDIVKQ----------- 494 Query: 446 LVGTLLVTFLGLHALRR-LHNIDDAKKG-EVGGKSILSPPPISSAVTTGLMPNDNIALDS 503 ++G L + L LR L NI KG + + + G + +D +++ Sbjct: 495 VLGVLFILVLVFGVLRPVLSNISGGGKGKALADGGRDGDLALGDSGLEGSLADDRVSIGG 554 Query: 504 SNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + + S + +++N+ + +++ + R A+++++W ++ Sbjct: 555 PSSILLPSPTEGYDAQLNA---------IKNLVAQDPGRVAQVVKEWINADE 597 >gi|319405414|emb|CBI79033.1| Flagellar M-ring protein FliF [Bartonella sp. AR 15-3] Length = 554 Score = 444 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 211/558 (37%), Positives = 326/558 (58%), Gaps = 17/558 (3%) Query: 3 ILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 + D+ L F S LG R++ L V L + + F++ P Y+ LYV L Sbjct: 1 MFDKFLAFLSSSGNALYKLGVKRLIALGMVGLTLFGTILFSSFYLTRPVYETLYVGLSRD 60 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 DVNR+ +AL EA I F +S +GS + VP +AR+ LA +GLP+S+ N+GYELFD + Sbjct: 61 DVNRMGMALGEAGIAFDVSSDGSVVQVPVGQAEQARMFLAEKGLPTSN-NAGYELFDNMG 119 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178 S GLTSFMQEITR RALEGEIARTIQ + G+ AARVHIV+PD GSFRK +PTASV+IR Sbjct: 120 SLGLTSFMQEITRQRALEGEIARTIQVVQGVKAARVHIVLPDKGSFRKANQKPTASVVIR 179 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQAI 237 + +SA++IR LVAAAVP+L+ VTV+D+ G+LL + + S+ Q + Sbjct: 180 TNSGFAVESAQSIRQLVAAAVPSLEASSVTVMDTRGQLLASGVDAMNGASIMMASLEQQV 239 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 +I+ NI K L +LG+D+F+++V L+ D +Q E V+DP+S+V RS+R +D S Sbjct: 240 ASQIDANIRKQLVPYLGLDHFQTSVQVVLDTDRRQTNETVFDPESQVVRSVRSVRDQADS 299 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 + ++ AV VEQN+P S + D++EE +NYEIN+K+I+T D Y +++L Sbjct: 300 QNNRNSDAVGVEQNIPQEEIANGGGETSTDKKDRREEITNYEINSKTISTVSDGYSVKKL 359 Query: 358 SIAVVVNKGRLTEVLG-RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 ++A+VV++ RL G + + ++ + I ++V+AA G++ +RGD I +T++DF+ + Sbjct: 360 AVAIVVDRARLILPDGTKPTSENALNDEVNRIQQMVAAAAGLDPKRGDIINVTAVDFVGH 419 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476 + VQ LSR+ + +IN + ++ L+ FLG+ L R + + KK Sbjct: 420 SEADMAPVQTPIWKSLSRYTSGLINGVALVIAVFLILFLGVRPLMR--EMREGKKALENN 477 Query: 477 KSILSPPPISSAVTTGLMPNDNI-ALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 ++ ++ A+ N ++ +N D ++ RN + RL MI Sbjct: 478 ENTVAGLGNIPALEHQYQANAEFGSVRGTNNDTLNNLRN-------RMRVPPQNRLEQMI 530 Query: 536 EINEERFAKILRKWARSE 553 ++EERFA +LR+W Sbjct: 531 AMDEERFAGVLREWVNDT 548 >gi|323527692|ref|YP_004229845.1| flagellar M-ring protein FliF [Burkholderia sp. CCGE1001] gi|323384694|gb|ADX56785.1| flagellar M-ring protein FliF [Burkholderia sp. CCGE1001] Length = 600 Score = 444 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 141/533 (26%), Positives = 237/533 (44%), Gaps = 30/533 (5%) Query: 38 AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97 + +P Y LY L D I AL +ANI ++ SD G +I VP+ V + R+ L Sbjct: 80 GLFLWSRAPDYKVLYSNLSDRDGGAIITALQQANIPYKFSDAGGAILVPAEQVHEMRLRL 139 Query: 98 AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 A+QGLP S S G+EL D FG++ F ++I RALEGE+ RTI+SIS + +ARVH+ Sbjct: 140 ASQGLPKSGS-VGFELMD-NQKFGISQFAEQINYQRALEGELERTIESISSVKSARVHLA 197 Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGK 215 +P F + P+ASV++ + AI H+V++AVP + + VT+LD G Sbjct: 198 IPKPSVFVRDKEAPSASVLVNLFPGRALDEGQVLAITHMVSSAVPEMPVKGVTILDQDGN 257 Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LLT + L Q I+ + I+ LA G N S V A+++ + Sbjct: 258 LLTQPSTGGGLDASQLKYRQQIERNTQQRIDAILAPLFGAGNAHSQVSADIDFSRSEQTS 317 Query: 276 IVYDPDS----KVERSIRLSKDAQRSE----------TSQPESAVTVEQNMPHVSDRKVP 321 Y P+ RS + S + S+ ++QP + N P+ + V Sbjct: 318 ENYGPNGNPQQAAIRSQQSSTATEMSQGGASGVPGALSNQPPQPASAPINAPNGASSSV- 376 Query: 322 LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI 381 + +D+K+ +NYE++ + RLS+AVVVN R+ + G + Q Sbjct: 377 --TTTPVSDRKDMTTNYELDKTVRHLEQPMGGIRRLSVAVVVNYLRVVDGKGHATMQPVS 434 Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441 LA++N++V A G +++RGD++ + + F N+ D+L+ + Sbjct: 435 ADKLAQVNQLVKDAMGFDAQRGDSVNVVNSPFTAELDPNADLPWWRTPDMLALYKQIATY 494 Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501 + V L + ALRR + + P P + G+ + Sbjct: 495 LGIGAVALFLYFVMVKPALRRAFPPPEP------VVAAALPSPDEPILLDGIPAAER--A 546 Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH-MIEINEERFAKILRKWARSE 553 + N +I + L + N+ + +L + + + A +++ W E Sbjct: 547 GNGNVEIDNSDSELLALENAKHKYERNLEFARNIARQDPKIVATVVKNWVTDE 599 >gi|218892935|ref|YP_002441804.1| flagellar MS-ring protein [Pseudomonas aeruginosa LESB58] gi|218773163|emb|CAW28975.1| Flagella M-ring outer membrane protein precursor [Pseudomonas aeruginosa LESB58] Length = 598 Score = 444 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 131/593 (22%), Positives = 255/593 (43%), Gaps = 67/593 (11%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F + + + R + L + + + A + P Y LY L D NR+ AL Sbjct: 27 LSFLDNLSEMTMLRQIGLLVGLAASVAIGFAVVLWSQQPDYKPLYGSLNGVDANRVVEAL 86 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + A+I +++ N ++ V + +G+AR+ +A+ G+ + +N G+E+ DK + G + FM+ Sbjct: 87 TAADIPYKVEPNSGALLVKADDLGRARMKVASAGVAPTDNNVGFEILDKEQALGTSQFME 146 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 R LEGE+ART+ S++ + AARVH+ +P F + +P+ASV++ + Sbjct: 147 ATNYRRGLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDDRKPSASVLVELYPGRSLEP 206 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIEM 243 AI +LVA +VP LD VTV+D G LL+ + E + GK + ++ + Sbjct: 207 SQVMAIVNLVATSVPELDKSQVTVVDQKGNLLSDQQELSELTMAGKQFDFTRRMEGLLTQ 266 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 ++ L LG +++ V A+++ + +Y+PD RS + + + R +S P+ Sbjct: 267 RVHNILQPVLGNGRYKAEVSADVDFSAVESTSEMYNPDQPALRSEQRNNEE-RQNSSGPQ 325 Query: 304 SAVTVEQNMPHVSDRKVPLPRSL---------------------------------ENTD 330 N P + Sbjct: 326 GVPGALSNQPPGPASAPQQATASAPADYVAPGQPLKDANGQTIIDPKTGKPELAPYPTDK 385 Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEIN 389 + + NYE++ T +L RLS+AVV++ + G + Q LA Sbjct: 386 RDQTTRNYELDRSISYTKQQQGRLRRLSVAVVLDDQMKVDAKTGEVSHQPWSADELARFT 445 Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALVF 445 ++V + G ++ RGD++++ + F Q ++ Q F DI+ + Sbjct: 446 RLVQDSVGYDASRGDSVSVINAPFAPVQAEEIDSIPFYSQPWFWDIVKQ----------- 494 Query: 446 LVGTLLVTFLGLHALRR-LHNIDDAKKGE--VGGKSILSPPPISSAVTTGLMPNDNIALD 502 ++G L + L LR L NI KG+ GG + + G + +D +++ Sbjct: 495 VLGVLFILVLVFGVLRPVLSNITGGGKGKSLAGGGGRDGDLALGESGLEGSLADDRVSIG 554 Query: 503 SSNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + + S + +++N+ + +++ + R A+++++W ++ Sbjct: 555 GPSSILLPSPTEGYDAQLNA---------IKNLVAQDPGRVAQVVKEWINADE 598 >gi|296157432|ref|ZP_06840267.1| flagellar M-ring protein FliF [Burkholderia sp. Ch1-1] gi|295892204|gb|EFG71987.1| flagellar M-ring protein FliF [Burkholderia sp. Ch1-1] Length = 600 Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats. Identities = 140/531 (26%), Positives = 232/531 (43%), Gaps = 29/531 (5%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 + +P Y LY L D I AL ANI ++ SD G +I VP+ V + R+ LA+ Sbjct: 81 FLWSRAPDYKVLYSNLSDRDGGAIITALQAANIPYKFSDAGGAILVPAEQVHEMRLRLAS 140 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 QGLP S S G+EL D FG++ F ++I RALEGE+ RT++SIS + +ARVH+ +P Sbjct: 141 QGLPKSGS-VGFELMD-NQKFGISQFAEQINYQRALEGELERTVESISSVKSARVHLAIP 198 Query: 160 DMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + P+ASV++ + AI H+V++AVP++ + VT+LD G LL Sbjct: 199 KPSVFVRDKEAPSASVLVNLYPGRALDEGQVLAITHMVSSAVPDMPVKGVTILDQDGNLL 258 Query: 218 TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 T + L Q I+ + I+ LA G N S V A+++ + Sbjct: 259 TQPSTGNGLDASQLKYRQQIERSTQQRIDAILAPLFGSGNAHSQVSADIDFSHSEQTSEN 318 Query: 278 YDPDS----KVERSIRLSKDAQRSE----------TSQPESAVTVEQNMPHVSDRKVPLP 323 Y P+ RS + S + S+ ++QP + N P + P Sbjct: 319 YGPNGNPQQAAIRSQQSSSATEMSQGAASGVPGALSNQPPQPASAPINAPTGASGVTTTP 378 Query: 324 RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS 383 S D+K+ +NYE++ ++RLS+AVVVN R+ + G + Q Sbjct: 379 VS----DRKDSTTNYELDKTVRHLERPMGGIKRLSVAVVVNYLRVVDAKGHATMQPVTAD 434 Query: 384 YLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINAL 443 LA++N++V A G + RGD++ + + F + N+ D+++ Sbjct: 435 KLAQVNQLVKDAMGFDQARGDSVNVVNSAFSTDLDPNADLPWWRTPDMIALAKQIATYLG 494 Query: 444 VFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDS 503 + V L + ALRR + + P P + G+ + + Sbjct: 495 IGAVALFLYFVMVKPALRRAFPPPEPP------VAGALPSPDEPILLDGIPAAERVGAGG 548 Query: 504 SNQDIFSHSRNLQSRINSYVSKQSDLRLLH-MIEINEERFAKILRKWARSE 553 S+ L + NS + +L + + + A +++ W E Sbjct: 549 SSVAELESDSELLALENSKHKYERNLEFARNIARQDPKIVATVVKNWVSDE 599 >gi|209522223|ref|ZP_03270859.1| flagellar M-ring protein FliF [Burkholderia sp. H160] gi|209497337|gb|EDZ97556.1| flagellar M-ring protein FliF [Burkholderia sp. H160] Length = 555 Score = 444 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 139/560 (24%), Positives = 239/560 (42%), Gaps = 27/560 (4%) Query: 9 QFFKSGTSLGRTR---ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 F + + L + R L I + + + + +P Y LY L D I Sbjct: 7 NFGQRLSGLAQMRGNPRAPLVFAIALLVAVVAGLFLWSRTPDYKVLYSNLSDRDGGSIIA 66 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 AL +ANI +++SD+G +I VP+ V + R+ LA+QGLP S S G+EL D FG++ F Sbjct: 67 ALQQANIPYKLSDSGGAILVPAEQVHEMRLRLASQGLPKSGS-VGFELMD-NQKFGISQF 124 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 ++I R+LEGE+ RTI+SIS + +ARVH+ +P F + P+A+V++ V Sbjct: 125 NEQINYQRSLEGELERTIESISSVKSARVHLAIPKPSVFVRDKEAPSAAVLVNLYPGRVL 184 Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEM 243 AI H+V++AVP + + VT+LD G LLT + L Q I+ + Sbjct: 185 DEGQVVAITHMVSSAVPEMPVRGVTILDQDGNLLTQPSNGSGLDATQLKFRQQIERNTQQ 244 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 I+ LA G N RS V A+++ + Y P+ +++ S+ + + Sbjct: 245 RIDAILAPLFGPGNARSQVSADIDFSHSEQTSENYGPNGSPQQAAIRSQQSSSATEMSQG 304 Query: 304 SAVTVE---QNMPH-------VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 A V N P V+ + +D K+ +NYE++ Sbjct: 305 GASGVPGALSNQPPQPASAPIVAANGASSVATTPISDHKDSTTNYELDKTVRHVDQPMGG 364 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 + RLS+AVVVN R+ + G Q L +I ++V A G ++ RGD++ + + F Sbjct: 365 IHRLSVAVVVNYLRVVDAKGHVTMQPVSADKLMQITQLVKDAMGFDASRGDSVNVVNSAF 424 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 + N+ D+L+ + + V L + ALRR Sbjct: 425 TTDLDPNADLPWWRTPDMLALYKQIATYLGIGAVALFLYFVMVKPALRR-------AFPP 477 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 P + G+ + + + +I + S L + +++ Sbjct: 478 PPEPVPALMSPDEPVLLDGIPAEER---EGAIVEIETDSETLALENAKHKYERNLEFARS 534 Query: 534 MIEINEERFAKILRKWARSE 553 + + + A +++ W E Sbjct: 535 IARQDPKIVATVVKNWVSDE 554 >gi|307731342|ref|YP_003908566.1| flagellar M-ring protein FliF [Burkholderia sp. CCGE1003] gi|307585877|gb|ADN59275.1| flagellar M-ring protein FliF [Burkholderia sp. CCGE1003] Length = 600 Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats. Identities = 142/533 (26%), Positives = 241/533 (45%), Gaps = 30/533 (5%) Query: 38 AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97 + +P Y LY L D I AL +ANI ++ SD G +I VP+ V + R+ L Sbjct: 80 GLFLWSRAPDYKVLYSNLSDRDGGAIITALQQANIPYKFSDAGGAILVPAEQVHEMRLRL 139 Query: 98 AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 A+ GLP S S G+EL D FG++ F ++I RALEGE+ RTIQSIS + +ARVH+ Sbjct: 140 ASLGLPKSGS-VGFELMD-NQKFGISQFAEQINYQRALEGELERTIQSISSVKSARVHLA 197 Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGK 215 +P F + P+ASV++ + AI H+V++AVP + + VT+LD G Sbjct: 198 IPKPSVFVRDKEAPSASVLVNLYPGRALDEGQVLAITHMVSSAVPEMPVKGVTILDQDGN 257 Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LLT + + L Q I+ + I+ LA G N S V A+++ + Sbjct: 258 LLTQPSVGGGLDASQLKYRQQIERNTQQRIDAILAPLFGAGNAHSQVSADIDFSRSEQTS 317 Query: 276 IVYDPDS----KVERSIRLSKDAQRSE----------TSQPESAVTVEQNMPHVSDRKVP 321 Y P+ RS + S + S+ ++QP + N P+ + V Sbjct: 318 EAYGPNGNPQQAAIRSQQSSTATEMSQGGASGVPGALSNQPPQPASAPINAPNGASSSV- 376 Query: 322 LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI 381 + +D+K+ +NYE++ ++RLS+AVVVN R+ + GR+ Q Sbjct: 377 --TTTPVSDRKDMTTNYELDKTVRHLEQPMGGIKRLSVAVVVNYLRVVDGKGRATMQPVS 434 Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441 LA++N++V A G +++RGD++ + + F N+ D+L+ + Sbjct: 435 ADKLAQVNQLVKDAMGFDAQRGDSVNVVNSPFTAELDPNADLPWWRTPDMLALYKQIATY 494 Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501 + V L + ALRR + + P P + G+ + A Sbjct: 495 LGIGAVALFLYFVMVKPALRRAFPPPEP------VVAAALPSPDEPILLDGIPAAERAA- 547 Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH-MIEINEERFAKILRKWARSE 553 +++ +I + L + N+ + +L + + + A +++ W E Sbjct: 548 -NASVEIDTGDAELLALENAKHKYERNLEFARSIARQDPKIVATVVKNWVTDE 599 >gi|291617848|ref|YP_003520590.1| FliF [Pantoea ananatis LMG 20103] gi|291152878|gb|ADD77462.1| FliF [Pantoea ananatis LMG 20103] Length = 572 Score = 440 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 138/548 (25%), Positives = 241/548 (43%), Gaps = 56/548 (10%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P+Y L+ L D I L++ N+ +R +DNG ++ VP V + R+ LA Q Sbjct: 47 LWAKTPNYSVLFSNLSNEDGGAIVTQLTQMNVPYRFADNGGALMVPEDKVHELRLRLAEQ 106 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP N G+EL DK FG++ F +++ RALEGE+ARTI+S+ + ARVH+ MP Sbjct: 107 GLPKGG-NVGFELLDKE-KFGISQFSEQVNYQRALEGELARTIESLGPVKTARVHLAMPK 164 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + +AI H+V+++V L G+VTV+D +G LLT Sbjct: 165 PTLFVREQKAPSASVTLTLQPGRALDEGQIQAITHMVSSSVAGLPPGNVTVVDQSGHLLT 224 Query: 219 ANEM-ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 ++ R++ L ++ + I L LG N + V A++N DT + + Sbjct: 225 RSDAVGRDLNDAQLKYAAEVEARYQQRIEAILNPILGQGNVHAQVTAQINFDTSEQTDEK 284 Query: 278 YDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVSDRK--------------- 319 Y P+ + + S+ SE S P N P ++ Sbjct: 285 YQPNGDPKNASIRSQQTSTSEQSGSPYPGGVPGALSNQPAPANTAPVNAPNTNAANGQNA 344 Query: 320 -------------VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 S+ ++++ NYE++ T + ++RLS+AVVVN Sbjct: 345 NGQNNAANGQRTSTASASSVPTNSRRDDTVNYELDRTIRHTKMNVGDVQRLSVAVVVNYR 404 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 + + + + L +I + A G + +RGD++ + + F + ++ Sbjct: 405 EDDKGKALALN----EQQLKQIEDLTREAMGYSQQRGDSVNVVNSQFNTTE---PTVSEL 457 Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486 F S F +I+A +L+ L+ L +R H + + E G +S P Sbjct: 458 PFWQQQS-FFDQLISAGKWLLVALVAFILYRKTVRP-HVLRKKEAEESGCRS--DGCPCC 513 Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546 +A +G + + Q R +R+++ V Q R+ M E + A ++ Sbjct: 514 TAKRSGSLQ------RPAQQREMEQERKTNNRMSAEVMSQ---RIRDMSENDPRVVALVI 564 Query: 547 RKWARSEI 554 R+W +E+ Sbjct: 565 REWMGNEL 572 >gi|75674797|ref|YP_317218.1| flagellar MS-ring protein [Nitrobacter winogradskyi Nb-255] gi|74419667|gb|ABA03866.1| flagellar FliF M-ring protein [Nitrobacter winogradskyi Nb-255] Length = 541 Score = 440 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 142/549 (25%), Positives = 248/549 (45%), Gaps = 10/549 (1%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + LL F K LG +R++ + +V V I F V +P L+ L V D + I Sbjct: 1 MQGLLAFLKG---LGASRLMAMVAVTAVLIGFFAFVIMRVTTPQMTTLFTDLSVEDSSGI 57 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L I F + ++G+ I VP V + R+ LA GLP GYE+FDK ++ G T Sbjct: 58 IKDLERQAIPFELRNDGAVIMVPKDKVTRLRMKLAEAGLPKGGG-VGYEIFDKSDALGTT 116 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 SF+Q I R+RALEGE+ARTI++I + ARVH+V+P+ F + +P+AS+++R Sbjct: 117 SFVQNINRLRALEGELARTIRAIDRVQDARVHLVLPERPLFTREAPQPSASIVLRVRGGL 176 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEM 243 + AIRHLVA+AV L V+++D TG+LL A + + Sbjct: 177 EPQQIRAIRHLVASAVNGLKPQRVSIVDETGQLLADGSATDADGVSGDERRAAFEKRMRS 236 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 + +++ +G R + A+ + + +DP+ +V RS + +++ S T+ Sbjct: 237 QVEAIVSSVVGNGRARVQLSADFDYNKITQTSDKFDPEGRVLRSSQTREES--SLTADNN 294 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 VTV +P P + + + K EE +NYEI+ + + ++ R+S+AV+V Sbjct: 295 GQVTVNNELPGNQPSDNPN-TARDQSKKSEETNNYEISRTTKTEVTEAGRVNRISVAVLV 353 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 + G+ + + L I +V +A G + +RGD + + ++ F E + Sbjct: 354 DGAYARNDKGQMVYEERSQEQLDRIATLVRSAIGFDQKRGDQVEVVNLKFAEPPVVVPLA 413 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 ++ +++ V+ V LL + +R L A + + Sbjct: 414 EPTGWLGMMTLTKDDVMYVFELGVMALLGLVVTFMVIRPLVQRILAAEPATPSAQPAAAL 473 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 P+ + + + SN + +++ V QS R+ + E N A Sbjct: 474 PVPADASAQPTETGQNLIPGSNA---TAQLIDVAQVQGQVHAQSVHRVGELAERNPAETA 530 Query: 544 KILRKWARS 552 I+R+W Sbjct: 531 SIIRQWLAE 539 >gi|170700811|ref|ZP_02891802.1| flagellar M-ring protein FliF [Burkholderia ambifaria IOP40-10] gi|170134298|gb|EDT02635.1| flagellar M-ring protein FliF [Burkholderia ambifaria IOP40-10] Length = 587 Score = 439 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 126/528 (23%), Positives = 218/528 (41%), Gaps = 29/528 (5%) Query: 38 AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97 A + +P Y LY L D I AL +AN+ ++ +D G +I VPS+ V + R+ L Sbjct: 76 ALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSNQVHETRLKL 135 Query: 98 AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 AA GLP S G+EL D FG++ F +++ RALEGE+ RTI+SI+ + ARVH+ Sbjct: 136 AALGLPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLA 193 Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 +P F + P+ASV + V +AI +V++ VP++ +VT++D G Sbjct: 194 IPKPSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGN 253 Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LLT + L VQ ++ + I+ LA G N RS V A+++ + Sbjct: 254 LLTQTASASGLDASQLKYVQQVEGNTQKRIDAILAPIFGTGNARSQVSADIDFSKLEQTS 313 Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPH-------VSDRKVPLPRS 325 Y P+ +++ S+ + A V N P V+ +S Sbjct: 314 ESYGPNGTPQQAAIRSQQTSSATELAQGGASGVPGALSNTPPQPASAPIVAGNGQNGAQS 373 Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385 +D+K++ +NYE++ ++RLS+AVVVN + + G Q L Sbjct: 374 TPVSDRKDQTTNYELDKTIRHVEQPMGNVKRLSVAVVVNYQPVADAKGHVTMQPLPPPKL 433 Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445 A+I ++V A G + +RGD++ + + F + D+++ + Sbjct: 434 AQIEQLVKDAMGYDEKRGDSVNVVNSAFSSVGDPYADLPWWRQPDMIAMAKEAAKWLGIA 493 Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505 L A+RR + + A P+ Sbjct: 494 AAAAALYFMFVRPAMRRAFPPPEPVAPALAAPDDPVALDGLPAPDKADEPDP-------- 545 Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + N ++R + + + + A +++ W E Sbjct: 546 --LLLGFENEKNRYERNLDYA-----RTIARQDPKIVATVVKNWVSDE 586 >gi|292487992|ref|YP_003530869.1| flagellar M-ring protein FliF [Erwinia amylovora CFBP1430] gi|292899212|ref|YP_003538581.1| flagellar M-ring protein [Erwinia amylovora ATCC 49946] gi|291199060|emb|CBJ46171.1| flagellar M-ring protein [Erwinia amylovora ATCC 49946] gi|291553416|emb|CBA20461.1| Flagellar M-ring protein FliF [Erwinia amylovora CFBP1430] gi|312172117|emb|CBX80374.1| Flagellar M-ring protein FliF [Erwinia amylovora ATCC BAA-2158] Length = 573 Score = 439 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 136/550 (24%), Positives = 241/550 (43%), Gaps = 58/550 (10%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y L+ L D I L++ N+ ++ D G ++ VP++ V + R+ LA+Q Sbjct: 46 LWAKQPDYRVLFSNLSNEDGGTIVTQLTQMNVPYKFDDRGGALLVPAAQVHELRLRLASQ 105 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL DK FG++ F +++ RALEGE+ARTI ++ + ARVH+ MP Sbjct: 106 GLPKGGA-VGFELLDKE-KFGISQFSEQVNYQRALEGELARTISTLGPVKDARVHLAMPK 163 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + A+ H+V+++V + G+VTV+D +G+LLT Sbjct: 164 PTLFVREQKSPSASVTLALQPGRALDEGQINAVVHMVSSSVAGMPPGNVTVVDQSGRLLT 223 Query: 219 ANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 N+ R++ L ++ + I L LG N + V A+++ + ++ + Sbjct: 224 QNDPGGRDLNDTQLKYANDVETRYQQRIEAILGPILGNGNVHAQVTAQIDFNKREKTDEQ 283 Query: 278 YDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPHVSDRKV-------------- 320 Y P++ +R S+ SE SA V N P ++ Sbjct: 284 YSPNTNPDRQAIRSRQTSNSEQLGGPSAGGVPGALSNQPAPANAAPVTTANPNANNANAA 343 Query: 321 ----------------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 +++ ++ + + +NYE+N + T + +++RLS+AVVVN Sbjct: 344 NAANANNGQPANNAASGAQKTVPSSTRSDNTTNYEVNRTILHTKMNVGEVQRLSVAVVVN 403 Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424 T+ G+ DS + +I + A G + +RGD++ + + F +N + Sbjct: 404 --FRTDAAGKPI--ALKDSQIKQIENLTREAMGFSEQRGDSLNVVNSQFTDNSDLAAELP 459 Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPP 484 + + F LV +V +L L LRR A + G S Sbjct: 460 FWKQPAFIDQLFNAGRWLLVLIVAFILYRKLVSPQLRRKAEQQKAAEEAAGNALRSSTQD 519 Query: 485 ISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAK 544 AV S ++D + R Q R+++ V Q R+ M E + A Sbjct: 520 EGVAV-------------SLSKDELNQERKSQHRMSAEVLSQ---RIREMSENDPRVVAL 563 Query: 545 ILRKWARSEI 554 ++R+W + E+ Sbjct: 564 VIRQWMKDEL 573 >gi|187925740|ref|YP_001897382.1| flagellar MS-ring protein [Burkholderia phytofirmans PsJN] gi|187716934|gb|ACD18158.1| flagellar M-ring protein FliF [Burkholderia phytofirmans PsJN] Length = 603 Score = 438 bits (1127), Expect = e-120, Method: Composition-based stats. Identities = 136/535 (25%), Positives = 230/535 (42%), Gaps = 31/535 (5%) Query: 38 AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97 + +P Y LY L D I AL ANI ++ SD G +I VP+ V + R+ L Sbjct: 80 GLFLWSRAPDYKVLYSNLSDRDGGAIITALQAANIPYKFSDAGGAILVPAEQVHEMRLRL 139 Query: 98 AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 A+QGLP S S G+EL D FG++ F ++I RALEGE+ RTI+SIS + +ARVH+ Sbjct: 140 ASQGLPKSGS-VGFELMD-NQKFGISQFAEQINYQRALEGELERTIESISSVKSARVHLA 197 Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGK 215 +P F + P+ASV++ + AI H+V++AVP++ + VT+LD G Sbjct: 198 IPKPSVFVRDKEAPSASVLVNLYPGRALDEGQVLAITHMVSSAVPDMPVKGVTILDQDGN 257 Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LLT + L Q I+ + I+ LA G N S V A+++ + Sbjct: 258 LLTQLSTGSGLDASQLKYRQQIERSTQQRIDAILAPLFGSGNAHSQVSADIDFSHSEQTS 317 Query: 276 IVYDPDS----KVERSIRLSKDAQRSE----------TSQPESAVTVEQNMPHVSDRKVP 321 Y P+ RS + S + S+ ++QP + N P+ + Sbjct: 318 ENYGPNGNPQQAAIRSQQSSSATEMSQGAASGVPGALSNQPPQPASAPINAPNGASGVTT 377 Query: 322 LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI 381 P S D+K+ +NYE++ ++RLS+AVVVN R+ + G + Q Sbjct: 378 TPVS----DRKDSTTNYELDKTVRHLERPMGGIKRLSVAVVVNYLRVVDAKGHATMQPVT 433 Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441 LA++N++V A G + RGD++ + + F N+ D+++ Sbjct: 434 ADKLAQVNQLVKDAMGFDQARGDSVNVVNSPFSTEVDPNADLPWWRTPDMIALAKQIATY 493 Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501 + V L + ALRR + P + G+ + + Sbjct: 494 LGIGAVALFLYFVMVKPALRRAFPPPEPA------AVAALASPDEPILLDGIPAAERMGA 547 Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRL---LHMIEINEERFAKILRKWARSE 553 + ++ + + + + + L + + + A +++ W E Sbjct: 548 NGTSSSVAELEGDSELLALESAKHKYERNLEFARSIARQDPKIVATVVKNWVSDE 602 >gi|172062015|ref|YP_001809667.1| flagellar MS-ring protein [Burkholderia ambifaria MC40-6] gi|171994532|gb|ACB65451.1| flagellar M-ring protein FliF [Burkholderia ambifaria MC40-6] Length = 587 Score = 438 bits (1127), Expect = e-120, Method: Composition-based stats. Identities = 126/528 (23%), Positives = 219/528 (41%), Gaps = 29/528 (5%) Query: 38 AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97 A + +P Y LY L D I AL +AN+ ++ +D G +I VPS+ V + R+ L Sbjct: 76 ALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSNQVHETRLKL 135 Query: 98 AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 AA GLP S G+EL D FG++ F +++ RALEGE+ RTI+SI+ + ARVH+ Sbjct: 136 AALGLPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLA 193 Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 +P F + P+ASV + V +AI +V++ VP++ +VT++D G Sbjct: 194 IPKPSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGN 253 Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LLT + L VQ ++H + I+ LA G N RS V A+++ + Sbjct: 254 LLTQTASASGLDASQLKYVQQVEHNTQKRIDAILAPIFGTGNARSQVSADIDFSKLEQTS 313 Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPH-------VSDRKVPLPRS 325 Y P+ +++ S+ + A V N P V+ +S Sbjct: 314 ESYGPNGTPQQAAIRSQQTSSATELAQGGASGVPGALSNTPPQPASAPIVAGNGQNGAQS 373 Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385 +D+K++ +NYE++ ++RLS+AVVVN + + G Q L Sbjct: 374 TPVSDRKDQTTNYELDKTIRHVEQPMGNVKRLSVAVVVNYQPVADAKGHVTMQPLPPPKL 433 Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445 A++ ++V A G + +RGD++ + + F + D+++ + Sbjct: 434 AQVEQLVKDAMGYDEKRGDSVNVVNSAFSSVGDPYADLPWWRQPDMIAMAKEAAKWLGIA 493 Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505 L A+RR + + A P+ Sbjct: 494 AAAAALYFMFVRPAMRRAFPPPEPVAPALAAPDDPVALDGLPAPDKADEPDP-------- 545 Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + N ++R + + + + A +++ W E Sbjct: 546 --LLLGFENEKNRYERNLDYA-----RTIARQDPKIVATVVKNWVSDE 586 >gi|206558926|ref|YP_002229686.1| flagellar MS-ring protein [Burkholderia cenocepacia J2315] gi|198034963|emb|CAR50835.1| flagellar M-ring protein FliF [Burkholderia cenocepacia J2315] Length = 587 Score = 438 bits (1126), Expect = e-120, Method: Composition-based stats. Identities = 131/528 (24%), Positives = 222/528 (42%), Gaps = 28/528 (5%) Query: 38 AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97 A + +P Y LY L D I AL +AN+ ++ +D G +I VPS+ V + R+ L Sbjct: 75 ALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSNQVHETRLKL 134 Query: 98 AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 AA GLP S G+EL D FG++ F ++I RALEGE+ RTI+SI+ + ARVH+ Sbjct: 135 AAMGLPKGGS-VGFELMD-NQKFGISQFAEQINYQRALEGELQRTIESINAVRGARVHLA 192 Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 +P F + P+ASV + V +AI +V++ VP++ +VT++D G Sbjct: 193 IPKPSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGN 252 Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LLT + L VQ ++H + I+ LA G N RS V A+L+ + Sbjct: 253 LLTQTASASGLDASQLKYVQQVEHNTQKRIDAILAPIFGAGNARSQVSADLDFSKIEQTS 312 Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPH-------VSDRKVPLPRS 325 Y P+ +++ S+ + A V N P V+ P++ Sbjct: 313 ESYGPNGTPQQAAIRSQQTSSATELAQGGASGVPGALSNTPPQPASAPIVAGNGQNAPQT 372 Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385 +D+K++ +NYE++ T ++RLS+AVVVN + + G Q + L Sbjct: 373 TPVSDRKDQTTNYELDKTIRHTEQPMGSVKRLSVAVVVNYQPVADAKGHVTMQPLPPAKL 432 Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445 A++ ++V A G + +RGD++ + + F + D+++ + Sbjct: 433 AQVEQLVKDAMGYDEKRGDSVNVVNSAFSTVSDPYADLPWWRQPDMIAMAKEAAKWLGIA 492 Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505 L A+RR + + A D + L Sbjct: 493 AAAAALYFMFVRPAMRRAFPPPEPAAPALAAPEDAVALDGLPAPDKAAEEPDPLLL---- 548 Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ N Y R + + + A +++ W E Sbjct: 549 --------GFENEKNRYERNLDYAR--TIARQDPKIVATVVKNWVSDE 586 >gi|295098292|emb|CBK87382.1| flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 543 Score = 438 bits (1126), Expect = e-120, Method: Composition-based stats. Identities = 131/543 (24%), Positives = 233/543 (42%), Gaps = 51/543 (9%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 + SP Y LY L D I L++ NI +R +DNG ++ VP+ V + R+ LA Sbjct: 26 MVLWAKSPDYRTLYSNLSDQDGGAIVTQLTQMNIPYRFADNGGALEVPADKVHELRLRLA 85 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 QGLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ M Sbjct: 86 QQGLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAM 143 Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 P F + P+ASV + A+ HLV++AV L G+VT++D +G L Sbjct: 144 PKPSLFVREQKSPSASVTVNLEPGRALDEGQISAVTHLVSSAVAGLPPGNVTLVDQSGHL 203 Query: 217 LT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LT +N R++ L ++ ++ I L +G N + V A+++ ++ E Sbjct: 204 LTQSNTAGRDLNDAQLKYAADVEGRLQRRIEAILGPVVGSSNVHAQVTAQIDFSNKEQTE 263 Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVSDRKV------------ 320 Y P+ R++ S+ +E P N P ++ Sbjct: 264 EQYAPNGDASRAVLRSRQINETEQVGGQYPGGVPGALSNQPAPANAAPISTPPANPQNGQ 323 Query: 321 --------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372 + + E +NYE++ T + ++RLS+AVVVN L + Sbjct: 324 QTNQQTTSTANSTGPRNSSRNETTNYEVDRTIRHTKLNTGDIQRLSVAVVVNYKTLPDGK 383 Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDIL 432 + +I + A G + +RGDT+ + + F + ++ F Sbjct: 384 PL----PLTAEQMKQIEDLTREAMGFSEKRGDTLNVVNSPFNP---VDETGGELPFWQQQ 436 Query: 433 SRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTG 492 + F +++A +L+ ++ L +R A+ + + + P AV Sbjct: 437 A-FFDQLMSAGRWLLVLIVAWLLWRKGVRPQLQRR-AEAEKAALEQKNARPDEEEAVEVR 494 Query: 493 LMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 L ++ + +NQ R+ + V Q R+ M + + A ++R W + Sbjct: 495 LSKDEQMQQRRANQ-----------RMGAEVMSQ---RIREMSDNDPRVVALVIRGWMGN 540 Query: 553 EIE 555 E E Sbjct: 541 EHE 543 >gi|115353160|ref|YP_774999.1| flagellar MS-ring protein [Burkholderia ambifaria AMMD] gi|115283148|gb|ABI88665.1| flagellar M-ring protein FliF [Burkholderia ambifaria AMMD] Length = 587 Score = 438 bits (1126), Expect = e-120, Method: Composition-based stats. Identities = 127/528 (24%), Positives = 219/528 (41%), Gaps = 29/528 (5%) Query: 38 AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97 A + +P Y LY L D I AL +AN+ ++ +D G +I VPS+ V + R+ L Sbjct: 76 ALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSNQVHETRLKL 135 Query: 98 AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 AA GLP S G+EL D FG++ F +++ RALEGE+ RTI+SI+ + ARVH+ Sbjct: 136 AALGLPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLA 193 Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 +P F + P+ASV + V +AI +V++ VP++ +VT++D G Sbjct: 194 IPKPSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGN 253 Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LLT + L VQ ++ + I+ LA G N RS V A+++ + Sbjct: 254 LLTQTASASGLDASQLKYVQQVERNTQKRIDSILAPIFGTGNARSQVSADIDFSKLEQTS 313 Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPH-------VSDRKVPLPRS 325 Y P+ +++ S+ + A V N P V+ +S Sbjct: 314 ESYSPNGTPQQAAIRSQQTSSATELAQGGASGVPGALSNTPPQPASAPIVAGNGQNGAQS 373 Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385 +D+K++ +NYE++ ++RLS+AVVVN + + G Q L Sbjct: 374 TPVSDRKDQTTNYELDKTIRHVEQPMGNVKRLSVAVVVNYQPVADAKGHVTMQPLPPPKL 433 Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445 A++ ++V A G + +RGD++ + + F + D+++ + Sbjct: 434 AQVEQLVKDAMGYDEKRGDSVNVVNSAFSSVGDPYADLPWWRQPDMIAMAKEAAKWLGIA 493 Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505 L A+RR + + P GL D Sbjct: 494 AAAAALYFMFVRPAMRRAFPPPEPVAPALAA-------PDDPVALDGLPAPDRADEPDP- 545 Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + N ++R + + + + A +++ W E Sbjct: 546 --LLLGFENEKNRYERNLDYA-----RTIARQDPKIVATVVKNWVSDE 586 >gi|254246925|ref|ZP_04940246.1| Flagellar biosynthesis/type III secretory pathway lipoprotein [Burkholderia cenocepacia PC184] gi|124871701|gb|EAY63417.1| Flagellar biosynthesis/type III secretory pathway lipoprotein [Burkholderia cenocepacia PC184] Length = 587 Score = 438 bits (1126), Expect = e-120, Method: Composition-based stats. Identities = 131/528 (24%), Positives = 221/528 (41%), Gaps = 28/528 (5%) Query: 38 AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97 A + +P Y LY L D I AL +AN+ ++ +D G +I VPS V + R+ L Sbjct: 75 ALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSGQVHETRLKL 134 Query: 98 AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 AA GLP S G+EL D FG++ F ++I RALEGE+ RTI+SI+ + ARVH+ Sbjct: 135 AAMGLPKGGS-VGFELMD-NQKFGISQFAEQINYQRALEGELQRTIESINAVRGARVHLA 192 Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 +P F + P+ASV + V +AI +V++ VP++ +VT++D G Sbjct: 193 IPKPSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGN 252 Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LLT + L VQ ++H + I+ LA G N RS V A+L+ + Sbjct: 253 LLTQTASASGLDASQLKYVQQVEHNTQKRIDAILAPIFGAGNARSQVSADLDFSKIEQTS 312 Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPH-------VSDRKVPLPRS 325 Y P+ +++ S+ + A V N P V+ P++ Sbjct: 313 ESYGPNGTPQQAAIRSQQTSSATELAQGGASGVPGALSNTPPQPASAPIVAGNGQNGPQT 372 Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385 +D+K++ +NYE++ T ++RLS+AVVVN + + G Q + L Sbjct: 373 TPVSDRKDQTTNYELDKTIRHTEQPMGSVKRLSVAVVVNYQPVADAKGHVTMQPLPPAKL 432 Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445 A++ ++V A G + +RGD++ + + F + D+++ + Sbjct: 433 AQVEQLVKDAMGYDEKRGDSVNVVNSAFSTASDPYADLPWWRQPDMIAMAKEAAKWLGIA 492 Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505 L A+RR + + A D + L Sbjct: 493 AAAAALYFMFVRPAMRRAFPPPEPAAPALAAPEDTVALDGLPAPEKAAEEADPLLL---- 548 Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ N Y R + + + A +++ W E Sbjct: 549 --------GFENEKNRYERNLDYAR--TIARQDPKIVATVVKNWVSDE 586 >gi|134297240|ref|YP_001120975.1| flagellar MS-ring protein [Burkholderia vietnamiensis G4] gi|134140397|gb|ABO56140.1| flagellar M-ring protein FliF [Burkholderia vietnamiensis G4] Length = 587 Score = 438 bits (1126), Expect = e-120, Method: Composition-based stats. Identities = 131/527 (24%), Positives = 222/527 (42%), Gaps = 29/527 (5%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 + +P Y LY L D I AL +AN+ ++ +D G +I VPS+ V + R+ LA Sbjct: 77 LVLWSRTPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSNQVHETRLKLA 136 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 A GLP S G+EL D FG++ F +++ RALEGE+ RTI+SI+ + ARVH+ + Sbjct: 137 AMGLPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLAI 194 Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 P F + P+ASV I V +AI +V++ VP++ +VT++D G L Sbjct: 195 PKPSVFVRDKEAPSASVFIDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGNL 254 Query: 217 LTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 LT + L VQ ++ + I+ LA G N RS V A+++ + Sbjct: 255 LTQPASASGLDASQLKYVQQVERNTQKRIDSILAPIFGTGNARSQVSADIDFSKLEQTSE 314 Query: 277 VYDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPH-------VSDRKVPLPRSL 326 Y P+ +++ S+ + A V N P V+ P+S Sbjct: 315 SYGPNGTPQQAAIRSQQTSSATELAQGGASGVPGALSNTPPQPASAPIVAGNGQSGPQST 374 Query: 327 ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLA 386 +D+K++ +NYE++ ++RLS+AVVVN + + G Q + LA Sbjct: 375 PVSDRKDQTTNYELDKTIRHVEQPMGNVKRLSVAVVVNYQPVADAKGHVTMQPLPPAKLA 434 Query: 387 EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFL 446 +I ++V A G + +RGD++ + + F + D++ + Sbjct: 435 QIEQLVKDAMGYDEKRGDSVNVVNSAFSTANDPYADLPWWRQPDMIEMAKEAAKWLGIAA 494 Query: 447 VGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQ 506 L A+RR PP + A G + D + + Sbjct: 495 AAAALYFMFVRPAMRR-------------AFPPPEPPAPALAAPEGTVVLDGLPAPEAAA 541 Query: 507 DIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + ++ N Y R + + + A +++ W E Sbjct: 542 EPDPMLLGFENEKNRYERNLDYAR--TIARQDPKIVATVVKNWVSDE 586 >gi|317048599|ref|YP_004116247.1| flagellar M-ring protein FliF [Pantoea sp. At-9b] gi|316950216|gb|ADU69691.1| flagellar M-ring protein FliF [Pantoea sp. At-9b] Length = 571 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 130/546 (23%), Positives = 230/546 (42%), Gaps = 55/546 (10%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I L++ NI ++ ++NG ++ VP+ V + R+ LA QG Sbjct: 48 WAKAPDYRVLYSNLSDEDGGAIVTQLTQMNIPYQFAENGGALMVPADKVHELRLRLAQQG 107 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL DK FG++ F +++ RALEGE+ARTI+++ + +AR+H+ MP Sbjct: 108 LPKGGS-VGFELMDKE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARIHLAMPKP 165 Query: 162 GSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV + +A+ H+V+++VP L G+VTV+D G+LLT Sbjct: 166 TLFVREQKAPSASVTLNLQPGRALDEGQIQAVVHMVSSSVPGLPPGNVTVVDQAGRLLTR 225 Query: 220 NEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 ++ E R++ L ++ + I L +G N + V A+LN D + + Y Sbjct: 226 SDSEGRDLNDAQLKYTAEVEGRYQQRIEAILNPIVGQGNVHAQVTAQLNFDRSEQTDEKY 285 Query: 279 DPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVSD------------------ 317 P+ + S S+ SE + P N P ++ Sbjct: 286 QPNGSPDNSAIRSRQTSTSEQNGSPYPGGVPGALSNQPAPANTAPVTNPPANNANGQNAN 345 Query: 318 ---------RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368 S + ++++ NYE++ T + ++RLS+AVVVN Sbjct: 346 GQNNAANGTNTSTTQNSGPSNSRRDDTVNYELDRTIRHTKLNVGDVQRLSVAVVVNY--- 402 Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSF 428 + + D + +I + A G + RGD+I + + F + Sbjct: 403 -RADDKGKEVALNDQQIKQIEDLTREAMGYSQTRGDSINVVNSPFNMTEPAGGDLPFWQQ 461 Query: 429 MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSA 488 + + LV LV +L L + R + A ++ + + Sbjct: 462 QSFFDQLMSAGRWLLVALVAFILYRKLVRPQIMRKREQEQAAAEAAAARATAQEEEQAYS 521 Query: 489 VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRK 548 V ++D R +R+++ V Q R+ M E + A ++R+ Sbjct: 522 VQ-------------LSKDELDQERKSTNRMSAEVMSQ---RIRDMSENDPRVVALVIRE 565 Query: 549 WARSEI 554 W +E+ Sbjct: 566 WMSNEL 571 >gi|107023995|ref|YP_622322.1| flagellar MS-ring protein [Burkholderia cenocepacia AU 1054] gi|116691082|ref|YP_836705.1| flagellar MS-ring protein [Burkholderia cenocepacia HI2424] gi|170734416|ref|YP_001766363.1| flagellar MS-ring protein [Burkholderia cenocepacia MC0-3] gi|105894184|gb|ABF77349.1| flagellar M-ring protein FliF [Burkholderia cenocepacia AU 1054] gi|116649171|gb|ABK09812.1| flagellar M-ring protein FliF [Burkholderia cenocepacia HI2424] gi|169817658|gb|ACA92241.1| flagellar M-ring protein FliF [Burkholderia cenocepacia MC0-3] Length = 587 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 131/528 (24%), Positives = 222/528 (42%), Gaps = 28/528 (5%) Query: 38 AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97 A + +P Y LY L D I AL +AN+ ++ +D G +I VPS V + R+ L Sbjct: 75 ALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSGQVHETRLKL 134 Query: 98 AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 AA GLP S G+EL D FG++ F ++I RALEGE+ RTI+SI+ + ARVH+ Sbjct: 135 AAMGLPKGGS-VGFELMD-NQKFGISQFAEQINYQRALEGELQRTIESINAVRGARVHLA 192 Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 +P F + P+ASV + V +AI +V++ VP++ +VT++D G Sbjct: 193 IPKPSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGN 252 Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LLT + L VQ ++H + I+ LA G N RS V A+L+ + Sbjct: 253 LLTQTASASGLDASQLKYVQQVEHNTQKRIDAILAPIFGAGNARSQVSADLDFSKIEQTS 312 Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPH-------VSDRKVPLPRS 325 Y P+ +++ S+ + A V N P V+ P++ Sbjct: 313 ESYGPNGTPQQAAIRSQQTSSATELAQGGASGVPGALSNTPPQPASAPIVAGNGQNGPQT 372 Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385 +D+K++ +NYE++ T ++RLS+AVVVN + + G Q + L Sbjct: 373 TPVSDRKDQTTNYELDKTIRHTEQPMGSVKRLSVAVVVNYQPVADAKGHVTMQPLPPAKL 432 Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445 A++ ++V A G +++RGD++ + + F + D+++ + Sbjct: 433 AQVEQLVKDAMGYDAKRGDSVNVVNSAFSTVSDPYADLPWWRQPDMIAMAKEAAKWLGIA 492 Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505 L A+RR + + A D + L Sbjct: 493 AAAAALYFMFVRPAMRRAFPPPEPAAPALAAPEDTVALDGLPAPEKAAEEADPLLL---- 548 Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ N Y R + + + A +++ W E Sbjct: 549 --------GFENEKNRYERNLDYAR--TIARQDPKIVATVVKNWVSDE 586 >gi|328545497|ref|YP_004305606.1| flagellar M-ring protein [polymorphum gilvum SL003B-26A1] gi|326415238|gb|ADZ72301.1| Flagellar M-ring protein [Polymorphum gilvum SL003B-26A1] Length = 546 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 203/554 (36%), Positives = 322/554 (58%), Gaps = 14/554 (2%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + + LG R++ LA + + I ++++ P LY L+ DV Sbjct: 1 MPGREHAEKLLANLLELGTRRLIALALIGVATIATVGLGAYYLSRPQQTTLYTGLQGEDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +RI AL +A I + +S +G+++ V +AR+ LA +GLP +++GYELFD + S Sbjct: 61 SRIGSALQDAGIPYDVSSDGTAVLVNHGAAARARMLLAERGLPR-GADAGYELFDDLGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGE+ARTIQ + G+ AARVHIV+P+ GSFR+ P+ASV+IR+ Sbjct: 120 GLTSFMQEVTRVRALEGELARTIQLMQGVRAARVHIVLPEKGSFRRDQQPPSASVVIRSD 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL-SIVQAIQH 239 P ++A+AIRHLV+AAVP + VTVLD++G LL A + N + S+ A+ Sbjct: 180 VPDDLRTADAIRHLVSAAVPGMSADKVTVLDTSGGLLAAGKDPANASAGQIASLEAAVSG 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 I+ NI K L +LG+DNF+ +V A+LN D ++I E +YDP+S+VERS+R + + S+ Sbjct: 240 RIQENIRKTLTPYLGLDNFQVSVAADLNTDRRRIAETIYDPESRVERSVRTLRQNEMSQN 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 S E+ TV+QN+P + RS E ++EE NYEI++K+I T+ D Y +ERLSI Sbjct: 300 SSTETPTTVQQNLPDETVTAENGERSSEENQRREETVNYEISSKTIETSQDGYSVERLSI 359 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AV+V++ RL LG S D + + L EI ++V+++ G++SRRGD I ++ +DF+ Sbjct: 360 AVLVDRARLEASLGGSPDPDTVAAQLVEIEQLVASSAGVSSRRGDVIKVSVVDFVNGGRA 419 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNIDDAKKGEVGGKS 478 +S ++L R +INA L L+ + GL L L A E+G + Sbjct: 420 MEPVPPMSVSELLIRQSGNLINAFAILTVAGLLIWFGLRPALAVLVPQKSAAPAEIGELA 479 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 +++ GL + A + D ++L +++N + +L +++++ Sbjct: 480 MMTE-------GEGLAGEFSEARQLAGPDHSGMLQDLTNKLN----QSPLKKLESLLDLD 528 Query: 539 EERFAKILRKWARS 552 E++ A IL++W Sbjct: 529 EQQSAAILKQWMYE 542 >gi|167034925|ref|YP_001670156.1| flagellar MS-ring protein [Pseudomonas putida GB-1] gi|166861413|gb|ABY99820.1| flagellar M-ring protein FliF [Pseudomonas putida GB-1] Length = 592 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 126/591 (21%), Positives = 247/591 (41%), Gaps = 67/591 (11%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 + F ++ + + R + L + + + A + P Y LY L D ++ L Sbjct: 25 MAFLENISQMPMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLSGMDTKQVMDTL 84 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + A+I + + N ++ V + + +AR+ LAA G+ S N G+EL DK G + FM+ Sbjct: 85 AAADIPYNVEPNSGALLVKADDLSRARLKLAAAGVAPSDGNVGFELLDKEQGLGTSQFME 144 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 R+LEGE+ART+ S++ + AARVH+ +P F + +P+ASV++ + Sbjct: 145 ATRYRRSLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDERKPSASVLVELYPGRALEA 204 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEM 243 AI +LVA +VP LD VTV+D G LL+ + ++ GK + ++ + Sbjct: 205 GQVMAIVNLVATSVPELDKSQVTVVDQKGNLLSEQIQDSSLTQAGKQFDYSRRVESMLTQ 264 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 ++ L LG D +++ V A+L+ + ++PD RS + + + S P+ Sbjct: 265 RVHNILQPVLGNDRYKAEVSADLDFSAVESTSEQFNPDQPALRSEQSVDEQRASSQG-PQ 323 Query: 304 SAVTVEQNMPHVSDRKVPLPRSL----------------------------------ENT 329 N P + + Sbjct: 324 GVPGALSNQPPGAASAPQTTGGAATPASAIQPGQPLVDANGQQIMDPATGQPMLAPYPSD 383 Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEI 388 +++ N+E++ T ++ RLS+AVVV ++ +L G + LA Sbjct: 384 KRQQSTKNFELDRSISHTRQQQGRMTRLSVAVVVDDQVKLDPATGDATRAPWAAEDLARF 443 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALV 444 ++V A G ++ RGD++T+ ++ F ++ + Q F DI+ + Sbjct: 444 TRLVQDAVGFDASRGDSVTVINVPFAADRGEEIADIAFYQQPWFWDIVKQ---------- 493 Query: 445 FLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSS 504 ++G + + L LR + N + S + + G + ND ++L Sbjct: 494 -VLGVVFILVLVFGVLRPVLNNITGGGKQAASDSDMELGGMMG--LDGELANDRVSLGGP 550 Query: 505 NQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + S S ++++N+ + ++ + R A++++ W ++ Sbjct: 551 TSILLPSPSEGYEAQLNA---------IKGLVAEDPGRVAQVVKDWINADE 592 >gi|313497796|gb|ADR59162.1| FliF [Pseudomonas putida BIRD-1] Length = 592 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 126/591 (21%), Positives = 248/591 (41%), Gaps = 67/591 (11%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 + F ++ + + R + L + + + A + P Y LY L D ++ L Sbjct: 25 MAFLENISQMPMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLSGMDTKQVMDTL 84 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + A+I + + N ++ V + + +AR+ LAA G+ S N G+EL DK G + FM+ Sbjct: 85 AAADIPYNVEPNSGALLVKADDLSRARLKLAAAGVAPSDGNVGFELLDKEQGLGTSQFME 144 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 R+LEGE+ART+ S++ + AARVH+ +P F + +P+ASV++ + Sbjct: 145 TTRYRRSLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDERKPSASVLVELYPGRALEA 204 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEM 243 AI +LVA +VP LD VTV+D G LL+ + + GK + ++ + Sbjct: 205 GQVMAIVNLVATSVPELDKSQVTVVDQKGNLLSEQIQDSALTQAGKQFDYSRRVESMLTQ 264 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 ++ L LG D +++ V A+L+ + ++PD RS + + + S P+ Sbjct: 265 RVHNILQPVLGNDRYKAEVSADLDFSAVESTSEQFNPDQPALRSEQSVDEQRASSQG-PQ 323 Query: 304 SAVTVEQNMPHVSDRKV----------------------------------PLPRSLENT 329 N P + P+ + Sbjct: 324 GVPGALSNQPPGAASAPQTTGGAATPAAAIQPGQPLVDANGQQIMDPATGQPMLAPYPSD 383 Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEI 388 +++ N+E++ T ++ RLS+AVVV ++ ++ G + LA Sbjct: 384 KRQQSTKNFELDRSISHTRQQQGRMTRLSVAVVVDDQVKIDPATGDTTRAPWGAEDLARF 443 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALV 444 ++V A G ++ RGD++T+ ++ F ++ + Q F DI+ + Sbjct: 444 TRLVQDAVGFDASRGDSVTVINVPFAADRGEEIADIAFYQQPWFWDIVKQ---------- 493 Query: 445 FLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSS 504 ++G + + L LR + N + S + + G + ND ++L Sbjct: 494 -VLGVVFILVLVFGVLRPVLNNITGGGKQAAPDSDMELGGMMG--LDGELANDRVSLGGP 550 Query: 505 NQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + S S ++++N+ + ++ + R A++++ W ++ Sbjct: 551 TSILLPSPSEGYEAQLNA---------IKGLVAEDPGRVAQVVKDWINADE 592 >gi|157145268|ref|YP_001452587.1| flagellar MS-ring protein [Citrobacter koseri ATCC BAA-895] gi|157082473|gb|ABV12151.1| hypothetical protein CKO_01005 [Citrobacter koseri ATCC BAA-895] Length = 558 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 128/572 (22%), Positives = 239/572 (41%), Gaps = 52/572 (9%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L++ + R +++ S + + +A + +P Y L+ L D I L Sbjct: 14 LEWLNRLRANPRIPLIVAGS---AAVAIIVAMVLWAKAPDYRTLFSNLSDQDGGAIVTQL 70 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 ++ NI +R ++ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F + Sbjct: 71 TQMNIPYRFTEGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSE 128 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 ++ RALEGE+ARTI+++ + ARVH+ MP F + P+ASV + Sbjct: 129 QVNYQRALEGELARTIETLGPVKRARVHLAMPKPSLFVREQKSPSASVTVNLEPGRALDE 188 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-NILGKSLSIVQAIQHEIEMN 244 A+ HLV++AV L G+VT++D G LLT + ++ L ++ I+ Sbjct: 189 GQISAVVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSSRDLNDAQLKYASDVEGRIQRR 248 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---TSQ 301 I L+ +G N + V A+L+ ++ E Y P+ +++ S+ SE + Sbjct: 249 IESILSPIVGNGNVHAQVTAQLDFANKEQTEEQYRPNGDASQAVLRSRQLNESEQIGSGY 308 Query: 302 PESAVTVEQNMPHVSDRKV------------------PLPRSLENTDKKEEQSNYEINTK 343 P N P ++ ++ ++ E SNYE++ Sbjct: 309 PGGVPGALSNQPAPANAAPISTPPANQQNAQNTQTTNNTNSNVPRNTQRNETSNYEVDRT 368 Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403 T + ++RLS+AVVVN L + + +I + A G + +RG Sbjct: 369 IRHTKLNVGDVQRLSVAVVVNYRALPDGKPL----PLTTEQMKQIEDLTREAMGFSDKRG 424 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 DT+ + + F ++ F + +I+A +L+ L+ L A+R Sbjct: 425 DTLNVVNSPFTATDDLGG---ELPFWKQQA-FIEQLISAGRWLLVLLVAWILWRKAVRPQ 480 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 + ++ + + ++D + R R+ + V Sbjct: 481 LARRAEETKAAQEQAQVR------------QETEEAVEVRLSKDEQTQQRRANQRLGAEV 528 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 Q R+ M + + A ++R+W ++ E Sbjct: 529 MSQ---RIREMSDNDPRVVALVIRQWMNNDHE 557 >gi|110632647|ref|YP_672855.1| flagellar MS-ring protein [Mesorhizobium sp. BNC1] gi|110283631|gb|ABG61690.1| flagellar M-ring protein FliF [Chelativorans sp. BNC1] Length = 545 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 226/554 (40%), Positives = 341/554 (61%), Gaps = 13/554 (2%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + +QL ++ +LG R+ ++ V+ + + + ++N P Y+ LYV LE SDVN+ Sbjct: 1 MPEQLRTIVENLRALGPRRLAMMGGVLALTLAVVTGGAIYLNRPAYETLYVGLERSDVNQ 60 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I + L EA I F + +G+++ VP+ +AR+ LA +GLP SS+N+GYELFD V S GL Sbjct: 61 IGLVLGEAGIRFDVVSDGTAVLVPTGKTAEARMLLAEKGLP-SSANAGYELFDTVGSLGL 119 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T+FMQE+TRVRALEGEIARTI+SI+GI AARVHIVMP+ G+FR+ G P+ASV+IR Sbjct: 120 TTFMQEVTRVRALEGEIARTIRSIAGIRAARVHIVMPERGNFRREGQEPSASVVIRTSGI 179 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQAIQHEI 241 A +IR+LVAAAVP L VTVLDS+G LL A + N +S+ I + ++ ++ Sbjct: 180 DGAAKAASIRYLVAAAVPGLSAEKVTVLDSSGMLLAAGDDPANNTAQRSIGIERTVEAQV 239 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 E NI +ALA +LG DNFR++V AE+N DT+Q+ E+++DPDS+VERS+++ + A + Sbjct: 240 EENIRRALAPYLGPDNFRASVKAEVNTDTRQVEEVIFDPDSRVERSVQIVRTADSATRET 299 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 + TV QN+P LPRS E ++++EE +NYE+NTK IAT+ + Y++ RLSIAV Sbjct: 300 AATPTTVLQNLPQEEPAPAELPRSSEESERREETTNYELNTKRIATSSNGYQVTRLSIAV 359 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 VVN+GRL +LG +A + + + EI +V++A G+N RGD + + +++F++ Sbjct: 360 VVNEGRLAAILGDNAAPDALQTRIREIETVVASAAGLNETRGDVLNVAAVEFVDGLDGVE 419 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 L RH T+INAL F++ +T+ GL L + G+ I Sbjct: 420 MAEPGPLA-ALGRHSGTMINALAFVLAAFFITWFGLRPLATALTRGPEIEASAAGEEI-- 476 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 + ++ +AL + N S N + ++ + Q+ L M+++NEER Sbjct: 477 ------QALSQEGADERLALTAGNGVQSSEEANDEPQLKIKPAPQAL--LARMVDLNEER 528 Query: 542 FAKILRKWARSEIE 555 A ILRKWAR+E+E Sbjct: 529 TADILRKWARAEVE 542 >gi|161502909|ref|YP_001570021.1| flagellar MS-ring protein [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864256|gb|ABX20879.1| hypothetical protein SARI_00968 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 560 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 133/575 (23%), Positives = 242/575 (42%), Gaps = 55/575 (9%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L++ + R +++ S + + +A + +P Y L+ L D I L Sbjct: 14 LEWLNRLRANPRIPLIVAGS---AAVAIIVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQL 70 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 ++ NI +R ++ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F + Sbjct: 71 TQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSE 128 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 ++ RALEGE+ARTI+++ + +ARVH+ MP F + P+ASV + Sbjct: 129 QVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDE 188 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMN 244 A+ HLV++AV L G+VT++D +G LLT +N R++ L ++ I+ Sbjct: 189 GQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRR 248 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET---SQ 301 I L+ +G N + V A+L+ ++ E Y P+ ++ S+ SE Sbjct: 249 IEAILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQIGAGY 308 Query: 302 PESAVTVEQNMPHVSD-----RKVPLPRSLENT----------------DKKEEQSNYEI 340 P N P + ++ +NT ++ E SNYE+ Sbjct: 309 PGGVPGALSNQPAPPNEAPIATPPGNQQNAQNTAQTSTSTNSNSTGPRNTQRNETSNYEV 368 Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400 + T + +ERLS+AVVVN L + + +I + A G + Sbjct: 369 DRTIRHTKMNVGDIERLSVAVVVNYKTLADGKPL----PLTADQMKQIEDLTREAMGFSD 424 Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460 +RGDT+ + + F + ++ F S ++ A +L+ L+ L A+ Sbjct: 425 KRGDTLNVVNSPF---SAVDETGGELPFWQQQS-FIDQLLAAGRWLLVLLVAWILWRKAV 480 Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520 R + ++ + + ++D R R+ Sbjct: 481 RPQLTRRVEETKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQRLG 528 Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + V Q R+ M + + A ++R+W ++ E Sbjct: 529 AEVMSQ---RIREMSDNDPRVVALVIRQWMSNDHE 560 >gi|104782821|ref|YP_609319.1| flagellar MS-ring protein [Pseudomonas entomophila L48] gi|95111808|emb|CAK16532.1| flagellar basal-body M-ring protein FliF [Pseudomonas entomophila L48] Length = 592 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 127/591 (21%), Positives = 248/591 (41%), Gaps = 67/591 (11%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 + F ++ + + R + L + + + A + P Y LY L D ++ L Sbjct: 25 MAFLENISQMPMLRQVGLLVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDTKQVMDTL 84 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + A+I + + N ++ V + + +AR+ LAA G+ S N G+EL DK G + FM+ Sbjct: 85 ASADIPYHVEPNSGALLVKADDLSRARLKLAAAGVAPSDGNVGFELLDKEQGLGTSQFME 144 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 R+LEGE+ART+ S++ + AARVH+ +P F + +P+ASV++ + Sbjct: 145 TTRYRRSLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDERKPSASVLVELYPGRALEA 204 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEM 243 AI +LVA +VP LD VTV+D G LL+ + ++ GK + ++ + Sbjct: 205 GQVMAIVNLVATSVPELDKSQVTVVDQKGNLLSDQLQDTALSMAGKQFDYSRRMEGLLTQ 264 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 ++ L LG D +++ V A+++ + ++PD RS + + + S P+ Sbjct: 265 RVHNILQPVLGNDRYKAEVSADVDFSAVESTSEQFNPDQPALRSEQSVNEQRASSQG-PQ 323 Query: 304 SAVTVEQNMPHVSDRKV----------------------------------PLPRSLENT 329 N P P+ + Sbjct: 324 GVPGALSNQPPAGASAPENARAAATPAGAIQPGQPLVDANGQQIMDPATGQPMLAPYPSD 383 Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN-KGRLTEVLGRSADQGKIDSYLAEI 388 +++ N+E++ T +L RLS+AVVV+ + +L G + LA Sbjct: 384 KRQQSTKNFELDRSISHTRQQQGRLTRLSVAVVVDDQVKLDAASGEATRTPWGAEDLARF 443 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALV 444 ++V A G ++ RGD++T+ ++ F ++ + Q F DI+ + Sbjct: 444 TRLVQDAVGFDASRGDSVTVINVPFAADRGDELVDIPFYSQPWFWDIVKQ---------- 493 Query: 445 FLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSS 504 ++G L + L LR + + S + + G + ND ++L Sbjct: 494 -VLGVLFILVLVFGVLRPVLTNITGGGKQAATDSDMELGGMIG--LDGELANDRVSLGGP 550 Query: 505 NQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + S S ++++N+ + ++ + R A+++++W ++ Sbjct: 551 TSILLPSPSEGYEAQLNA---------IKGLVAEDPGRVAQVVKEWINADE 592 >gi|289627784|ref|ZP_06460738.1| flagellar MS-ring protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651625|ref|ZP_06482968.1| flagellar MS-ring protein [Pseudomonas syringae pv. aesculi str. 2250] gi|298487835|ref|ZP_07005875.1| Flagellar M-ring protein fliF [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157560|gb|EFH98640.1| Flagellar M-ring protein fliF [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330866444|gb|EGH01153.1| flagellar MS-ring protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330986489|gb|EGH84592.1| flagellar MS-ring protein [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011063|gb|EGH91119.1| flagellar MS-ring protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 594 Score = 435 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 135/592 (22%), Positives = 244/592 (41%), Gaps = 66/592 (11%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y LY L D +I L Sbjct: 24 LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + ANI++ + N ++ V S V +ARI LA G+ + +N G+E+ DK G + FM+ Sbjct: 84 TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 R LEGE+ARTI +++ + ARVH+ +P F + +P+ASV++ + Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEM 243 AI +LVA +VP L +TV+D G LL+ A E + GK + ++ + Sbjct: 204 SQVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE----- 298 + L LG D +++ V A ++ + ++PD RS + + + S Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNEQRSSSSSTGG 323 Query: 299 -----TSQPESAVTVEQNM----------------------PHVSDRKVPLPRSLENTDK 331 ++QP T QN + D P Sbjct: 324 VPGALSNQPPGPATAPQNATAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPAD 383 Query: 332 K--EEQSNYEINTKSIATTHDNYKLERLSIAVVVNK-GRLTEVLGRSADQGKIDSYLAEI 388 K + N+E++ T +L RLS+AVVV+ + G + LA Sbjct: 384 KRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAADLARF 443 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALV 444 ++V A G ++ RGD++++ ++ F + Q F DI+ + Sbjct: 444 TRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYSQPWFWDIVKQ---------- 493 Query: 445 FLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDS 503 VG + + L LR L NI K E+ G + + G + ND ++L Sbjct: 494 -AVGVIFILILVFGVLRPVLTNITTGKSKELAGFGGDAELGGMGGL-DGELSNDRVSLGG 551 Query: 504 SNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + S + +++N+ + ++ + R A+++++W ++ Sbjct: 552 PQSILLPSPTEGYDAQLNA---------IKSLVAEDPGRVAQVVKEWINTDE 594 >gi|322616962|gb|EFY13870.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618201|gb|EFY15093.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625872|gb|EFY22691.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626324|gb|EFY23134.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632739|gb|EFY29484.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639081|gb|EFY35774.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640397|gb|EFY37053.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647242|gb|EFY43741.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649910|gb|EFY46331.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322660296|gb|EFY56534.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662977|gb|EFY59184.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668162|gb|EFY64321.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674079|gb|EFY70173.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675569|gb|EFY71643.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322686714|gb|EFY82692.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195398|gb|EFZ80578.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198074|gb|EFZ83191.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323207544|gb|EFZ92492.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211017|gb|EFZ95877.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217529|gb|EGA02248.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219604|gb|EGA04088.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323231551|gb|EGA15664.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235994|gb|EGA20073.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240564|gb|EGA24607.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245456|gb|EGA29456.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323250226|gb|EGA34118.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253963|gb|EGA37787.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255510|gb|EGA39271.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262107|gb|EGA45670.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266230|gb|EGA49720.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270661|gb|EGA54102.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 560 Score = 435 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 132/575 (22%), Positives = 243/575 (42%), Gaps = 55/575 (9%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L++ + R +++ S + + +A + +P Y L+ L D I L Sbjct: 14 LEWLNRLRANPRIPLIVAGS---ATVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQL 70 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 ++ NI +R ++ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F + Sbjct: 71 TQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSE 128 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 ++ RALEGE+ARTI+++ + +ARVH+ MP F + P+ASV + Sbjct: 129 QVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDE 188 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMN 244 A+ HLV++AV L G+VT++D +G LLT +N R++ L ++ I+ Sbjct: 189 GQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRR 248 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET---SQ 301 I L+ +G N + V A+L+ ++ E Y P+ ++ S+ SE Sbjct: 249 IEAILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGY 308 Query: 302 PESAVTVEQNMP--------------HVSDRKVPLPRSLENTDK-------KEEQSNYEI 340 P N P + + P + N++ + E SNYE+ Sbjct: 309 PGGVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRNTQRNETSNYEV 368 Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400 + T + +ERLS+AVVVN L + + +I + A G + Sbjct: 369 DRTIRHTKMNVGDIERLSVAVVVNYKTLADGKPL----PLTADQMKQIEDLTREAMGFSD 424 Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460 +RGDT+ + + F ++ ++ F S ++ A +L+ ++ L A+ Sbjct: 425 KRGDTLNVVNSPF---SAVDNTGGELPFWQQQS-FIDQLLAAGRWLLVLVVAWILWRKAV 480 Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520 R + ++ + + ++D R R+ Sbjct: 481 RPQLTRRVEETKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQRLG 528 Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + V Q R+ M + + A ++R+W ++ E Sbjct: 529 AEVMSQ---RIREMSDNDPRVVALVIRQWMSNDHE 560 >gi|295678025|ref|YP_003606549.1| flagellar M-ring protein FliF [Burkholderia sp. CCGE1002] gi|295437868|gb|ADG17038.1| flagellar M-ring protein FliF [Burkholderia sp. CCGE1002] Length = 598 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 136/527 (25%), Positives = 231/527 (43%), Gaps = 26/527 (4%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 + +P Y LY L D I AL +ANI +++S++G+++ VP+ V + R+ LA+ Sbjct: 84 FLWSRAPSYKVLYSNLSDRDGGSIITALQQANIPYKLSESGTAVLVPAEQVHETRLRLAS 143 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 QGLP S S G+EL D FG++ F +++ RALEGE+ RTI SIS + +ARVH+ +P Sbjct: 144 QGLPKSGS-VGFELMD-NQKFGISQFDEQVNYQRALEGELERTIGSISSVKSARVHLAIP 201 Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + P+ASV++ V AI H+VA+AVP + + VT+LD G LL Sbjct: 202 KPSVFVRDKEPPSASVLVNLYPGRVLDEGQVVAITHMVASAVPQMPVRGVTILDQDGNLL 261 Query: 218 TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 T + L Q I+ + I+ LA G N RS V A+++ + Sbjct: 262 TQPTNGSGLDATQLKFRQQIERNTQQRIDTILAPLFGAGNARSQVSADIDFSHSEQTSEK 321 Query: 278 YDPDS----KVERSIRLSKDAQRSETSQPESAVTVEQNMPH-------VSDRKVPLPRSL 326 Y P++ RS + S + S+ N P V+ + Sbjct: 322 YGPNANPQDAAIRSQQTSSATEMSQGG-ASGVPGALSNQPPQPASAPIVAGNGASSVSTT 380 Query: 327 ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLA 386 +D K+ +NYE++ + RL++AVVVN R+ + G Q LA Sbjct: 381 PISDHKDSTTNYELDKTVRHIDQPMGGIRRLTVAVVVNYMRVVDPKGHVTMQPVSADKLA 440 Query: 387 EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFL 446 +I ++V A G ++ RGD++ + + F + N+ D+L+ + + Sbjct: 441 QITQLVKDAMGYDASRGDSVNVVNSAFTTDLDPNADLPWWRTPDMLALYKQIATYLGIGA 500 Query: 447 VGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQ 506 V L + ALRR + P + G+ ++ D + Sbjct: 501 VALFLYFVMVKPALRRAFPPPPEPVPAL-------MSPDEPVLLDGIPADER---DGAVV 550 Query: 507 DIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 +I + S L + +++ ++ + + A +++ W E Sbjct: 551 EIEADSEKLALENAKHKYERNLEFARNIARQDPKIVATVVKNWVSDE 597 >gi|71734724|ref|YP_275541.1| flagellar MS-ring protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555277|gb|AAZ34488.1| flagellar M-ring protein FliF [Pseudomonas syringae pv. phaseolicola 1448A] Length = 594 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 135/592 (22%), Positives = 244/592 (41%), Gaps = 66/592 (11%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y LY L D +I L Sbjct: 24 LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + ANI++ + N ++ V S V +ARI LA G+ + +N G+E+ DK G + FM+ Sbjct: 84 TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 R LEGE+ARTI +++ + ARVH+ +P F + +P+ASV++ + Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEM 243 AI +LVA +VP L +TV+D G LL+ A E + GK + ++ + Sbjct: 204 SQVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE----- 298 + L LG D +++ V A ++ + ++PD RS + + + S Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNEQRSSSSSTGG 323 Query: 299 -----TSQPESAVTVEQNM----------------------PHVSDRKVPLPRSLENTDK 331 ++QP T QN + D P Sbjct: 324 VPGALSNQPPGPATAPQNATAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPAD 383 Query: 332 K--EEQSNYEINTKSIATTHDNYKLERLSIAVVVNK-GRLTEVLGRSADQGKIDSYLAEI 388 K + N+E++ T +L RLS+AVVV+ + G + LA Sbjct: 384 KRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAADLARF 443 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALV 444 ++V A G ++ RGD++++ ++ F + Q F DI+ + Sbjct: 444 TRLVQDAVGFDASRGDSVSVINVPFSIERAEVLPEASFYSQPWFWDIVKQ---------- 493 Query: 445 FLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDS 503 VG + + L LR L NI K E+ G + + G + ND ++L Sbjct: 494 -AVGVIFILILVFGVLRPVLTNITTGKSKELAGFGGDAELGGMGGL-DGELSNDRVSLGG 551 Query: 504 SNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + S + +++N+ + ++ + R A+++++W ++ Sbjct: 552 PQSILLPSPTEGYDAQLNA---------IKSLVAEDPGRVAQVVKEWINTDE 594 >gi|320325114|gb|EFW81183.1| flagellar MS-ring protein [Pseudomonas syringae pv. glycinea str. B076] Length = 594 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 135/592 (22%), Positives = 244/592 (41%), Gaps = 66/592 (11%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y LY L D +I L Sbjct: 24 LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + ANI++ + N ++ V S V +ARI LA G+ + +N G+E+ DK G + FM+ Sbjct: 84 TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 R LEGE+ARTI +++ + ARVH+ +P F + +P+ASV++ + Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEM 243 AI +LVA +VP L +TV+D G LL+ A E + GK + ++ + Sbjct: 204 SQVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE----- 298 + L LG D +++ V A ++ + ++PD RS + + + S Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNEQRSSSSGTGG 323 Query: 299 -----TSQPESAVTVEQNM----------------------PHVSDRKVPLPRSLENTDK 331 ++QP T QN + D P Sbjct: 324 VPGALSNQPPGPATAPQNATAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPAD 383 Query: 332 K--EEQSNYEINTKSIATTHDNYKLERLSIAVVVNK-GRLTEVLGRSADQGKIDSYLAEI 388 K + N+E++ T +L RLS+AVVV+ + G + LA Sbjct: 384 KRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAADLARF 443 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALV 444 ++V A G ++ RGD++++ ++ F + Q F DI+ + Sbjct: 444 TRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYSQPWFWDIVKQ---------- 493 Query: 445 FLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDS 503 VG + + L LR L NI K E+ G + + G + ND ++L Sbjct: 494 -AVGVIFILILVFGVLRPVLTNITTGKSKELAGFGGDAELGRMGGL-DGELSNDRVSLGG 551 Query: 504 SNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + S + +++N+ + ++ + R A+++++W ++ Sbjct: 552 PQSILLPSPTEGYDAQLNA---------IKSLVAEDPGRVAQVVKEWINTDE 594 >gi|259908758|ref|YP_002649114.1| flagellar MS-ring protein [Erwinia pyrifoliae Ep1/96] gi|224964380|emb|CAX55889.1| Flagellar basal-body M-ring protein [Erwinia pyrifoliae Ep1/96] gi|283478734|emb|CAY74650.1| Flagellar M-ring protein FliF [Erwinia pyrifoliae DSM 12163] Length = 569 Score = 435 bits (1118), Expect = e-119, Method: Composition-based stats. Identities = 131/546 (23%), Positives = 235/546 (43%), Gaps = 54/546 (9%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y L+ L D I L++ N+ ++ D G ++ VP++ V + R+ LA+Q Sbjct: 46 LWAKQPDYRVLFSNLSNEDGGTIVTQLTQMNVPYKFDDQGGALLVPAAQVHELRLRLASQ 105 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL DK FG++ F +++ RALEGE+ARTI ++ + ARVH+ MP Sbjct: 106 GLPKGGA-VGFELLDKE-KFGISQFSEQVNYQRALEGELARTISTLGPVKDARVHLAMPK 163 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + A+ H+V+++V + G+VTV+D G+LLT Sbjct: 164 PTLFVREQKSPSASVTLALQPGRALDEGQINAVVHMVSSSVAGMPPGNVTVVDQAGRLLT 223 Query: 219 ANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 N+ R++ L ++ + I L LG N + V A+++ + ++ + Sbjct: 224 QNDPGGRDLNDTQLKYANDVETRYQQRIEAILGPILGNGNVHAQVTAQIDFNKREKTDEQ 283 Query: 278 YDPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDRKVPLP----------- 323 Y P+S+ ++ S+ SE S N P ++ P Sbjct: 284 YSPNSQPDQQAIRSRQTSNSEQLGGSSAGGVPGALSNQPAPANAAPVTPANNNANNANAN 343 Query: 324 ---------------RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368 +++ + + + +NYE+N + T + +++RLS+AVVVN Sbjct: 344 ANNGQPANNAANAAQKTVPSNTRSDNTTNYEVNRTILHTKMNVGEVQRLSVAVVVNY--- 400 Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSF 428 D+ + +I + A G + +RGD++ + + F +N + Sbjct: 401 -RADAAGKPIALKDAQIKQIENLTREAMGFSEQRGDSLNVVNSQFTDNSDLAAELPFWKQ 459 Query: 429 MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSA 488 + + F LV +V +L L LRR A + + S A Sbjct: 460 PAFIDQLFNAGRWLLVLIVAFILYRKLVSPQLRRKAEQQKATEEAAINAARSSTRDEGVA 519 Query: 489 VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRK 548 V S ++D + R Q R+++ V Q R+ M E + A ++R+ Sbjct: 520 V-------------SLSKDELNQERKSQHRMSAEVLSQ---RIREMSENDPRVVALVIRQ 563 Query: 549 WARSEI 554 W + E+ Sbjct: 564 WMKDEL 569 >gi|148546737|ref|YP_001266839.1| flagellar MS-ring protein [Pseudomonas putida F1] gi|148510795|gb|ABQ77655.1| flagellar M-ring protein FliF [Pseudomonas putida F1] Length = 592 Score = 435 bits (1118), Expect = e-119, Method: Composition-based stats. Identities = 126/591 (21%), Positives = 248/591 (41%), Gaps = 67/591 (11%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 + F ++ + + R + L + + + A + P Y LY L D ++ L Sbjct: 25 MAFLENISQMPMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLSGMDTKQVMDTL 84 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + A+I + + N ++ V + + +AR+ LAA G+ S N G+EL DK G + FM+ Sbjct: 85 AAADIPYNVEPNSGALLVKADDLSRARLKLAAAGVAPSDGNVGFELLDKEQGLGTSQFME 144 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 R+LEGE+ART+ S++ + AARVH+ +P F + +P+ASV++ + Sbjct: 145 ATRYRRSLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDERKPSASVLVELYPGRALEA 204 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEM 243 AI +LVA +VP LD VTV+D G LL+ + + GK + ++ + Sbjct: 205 GQVMAIVNLVATSVPELDKSQVTVVDQKGNLLSEQIQDSALTQAGKQFDYSRRVESMLTQ 264 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 ++ L LG D +++ V A+L+ + ++PD RS + + + S P+ Sbjct: 265 RVHNILLPVLGNDRYKAEVSADLDFSAVESTSEQFNPDQPALRSEQSVDEQRASSQG-PQ 323 Query: 304 SAVTVEQNMPHVSDRKV----------------------------------PLPRSLENT 329 N P + P+ + Sbjct: 324 GVPGALSNQPPGAASAPQTTGGAATPAAAIQPGQPLVDANGQQIMDPATGQPMLAPYPSD 383 Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEI 388 +++ N+E++ T ++ RLS+AVVV ++ ++ G + LA Sbjct: 384 KRQQSTKNFELDRSISHTRQQQGRMTRLSVAVVVDDQVKIDPATGDTTRAPWGAEDLARF 443 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALV 444 ++V A G ++ RGD++T+ ++ F ++ + Q F DI+ + Sbjct: 444 TRLVQDAVGFDASRGDSVTVINVPFAADRGEEIADIAFYQQPWFWDIVKQ---------- 493 Query: 445 FLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSS 504 ++G + + L LR + N + S + + G + ND ++L Sbjct: 494 -VLGVVFILVLVFGVLRPVLNNITGGGKQAAPDSDMELGGMMG--LDGELANDRVSLGGP 550 Query: 505 NQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + S S ++++N+ + ++ + R A++++ W ++ Sbjct: 551 TSILLPSPSEGYEAQLNA---------IKGLVAEDPGRVAQVVKDWINADE 592 >gi|89094455|ref|ZP_01167395.1| flagellar M-ring protein [Oceanospirillum sp. MED92] gi|89081347|gb|EAR60579.1| flagellar M-ring protein [Oceanospirillum sp. MED92] Length = 554 Score = 435 bits (1118), Expect = e-119, Method: Composition-based stats. Identities = 123/555 (22%), Positives = 240/555 (43%), Gaps = 28/555 (5%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 L R + L + + + A + P L+ L SD N+I L N+ Sbjct: 15 GFNKLSIVRQIGLMVGLAASVAIGFAVVLWSQKPEQRVLFSNLTFSDANQIIEQLRLYNV 74 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 + +G +I VP V +AR+ LAA+G +S G+E+ D+ S G + FM+ Sbjct: 75 PYTFDADGRAILVPDEHVHQARLKLAAEGF-TSDKTVGFEILDREQSLGTSQFMETTKYR 133 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAEA 190 R LEGE+ARTI S++ + ARVH+ +P F + +PTASV + + + + Sbjct: 134 RGLEGELARTISSMTSVRNARVHLAIPKDTVFIRDTRKPTASVFLELFSGRKLERDQVAS 193 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEMNINKA 248 I +LVA+++P LD+ DVTV+D G+LL + + + + K L ++I+ + +N Sbjct: 194 IANLVASSIPALDVKDVTVVDQRGRLLNMRDKDVDVVLAAKQLEYTRSIEDTLLNRVNSI 253 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308 L +G+ FR+ V A+++ + + + +Y+PD RS + +++ P Sbjct: 254 LQPVVGMGRFRAEVSADVDFTSVEQTDELYNPDLPALRSEQTMDESRVG-NGAPVGIPGA 312 Query: 309 EQNMPH--------VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 N P S V + +K+ N+E++ T H ++ RL++A Sbjct: 313 LSNQPPGQSSVPEQASGEGVIAGNGQPGSSRKQATRNFELDRTISYTKHQQGRVRRLTVA 372 Query: 361 VVVNK-GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 VVV+ + G ++ + L + +V A G ++ RGD++ + + F + Sbjct: 373 VVVDDLASVNAETGETSRTPWDQNELERLRILVQDAVGFSTLRGDSVNVVNTPFAAEEPI 432 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + + + + + V+ A + L++ F L + R G + Sbjct: 433 VTEEIPLWKQEWVMDVMKQVMAA----IFVLVLVFGILRPILRNLAAAGTAGNVAGLGAA 488 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 + G D++ S + + + + + ++N+ + M+ + Sbjct: 489 GEVSAELEGLEGGDFSADSVTFGSDDGLLPTPNESFDYQLNA---------IRSMVAEDP 539 Query: 540 ERFAKILRKWARSEI 554 R A+ +++W + Sbjct: 540 ARVAQAVKQWVGDDE 554 >gi|16760913|ref|NP_456530.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|25304719|pir||AB0752 flagellar basal-body M-ring protein [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503210|emb|CAD05717.1| flagellar basal-body M-ring protein [Salmonella enterica subsp. enterica serovar Typhi] Length = 560 Score = 435 bits (1118), Expect = e-119, Method: Composition-based stats. Identities = 134/575 (23%), Positives = 246/575 (42%), Gaps = 55/575 (9%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L++ + R +++ S + + +A + +P Y L+ L D I L Sbjct: 14 LEWLNRLRANPRIPLIVAGST---AVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQL 70 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 ++ NI +R ++ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F + Sbjct: 71 TQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSE 128 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 ++ RALEGE+ARTI+++ + +ARVH+ MP F + P+ASV + Sbjct: 129 QVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDE 188 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMN 244 A+ HLV++AV L G+VT++D +G LLT +N R++ L ++ I+ Sbjct: 189 GQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRR 248 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET---SQ 301 I L+ +G N + V A+L+ ++ E Y P+ ++ S+ SE Sbjct: 249 IEAILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGY 308 Query: 302 PESAVTVEQNMP--------------HVSDRKVPLPRSLENTDK-------KEEQSNYEI 340 P N P + + P + N++ + E SNYE+ Sbjct: 309 PGGVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNNAGPRNTQRNETSNYEV 368 Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400 + T + +ERLS+AVVVN L + + +I + A G + Sbjct: 369 DRTIRHTKMNVGDIERLSVAVVVNYKTLADGKPL----PLTADQMKQIEDLTREAMGFSD 424 Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460 +RGDT+ + + F ++ ++ F S ++ A +L+ ++ L A+ Sbjct: 425 KRGDTLNVVNSPF---SAVDNTGGELPFWQQQS-FIDQLLAAGRWLLVLVVAWILWRKAV 480 Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520 ++ + + AV L ++ + +NQ R+ Sbjct: 481 HPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQ-----------RLG 528 Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + V Q R+ M + + A ++R+W ++ E Sbjct: 529 AEVMSQ---RIREMSDNDPRVVALVIRQWMSNDHE 560 >gi|320329373|gb|EFW85366.1| flagellar MS-ring protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330880568|gb|EGH14717.1| flagellar MS-ring protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 594 Score = 435 bits (1118), Expect = e-119, Method: Composition-based stats. Identities = 135/592 (22%), Positives = 244/592 (41%), Gaps = 66/592 (11%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y LY L D +I L Sbjct: 24 LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + ANI++ + N ++ V S V +ARI LA G+ + +N G+E+ DK G + FM+ Sbjct: 84 TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 R LEGE+ARTI +++ + ARVH+ +P F + +P+ASV++ + Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEM 243 AI +LVA +VP L +TV+D G LL+ A E + GK + ++ + Sbjct: 204 SQVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE----- 298 + L LG D +++ V A ++ + ++PD RS + + + S Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNEQRSSSSSTGG 323 Query: 299 -----TSQPESAVTVEQNM----------------------PHVSDRKVPLPRSLENTDK 331 ++QP T QN + D P Sbjct: 324 VPGALSNQPPGPATAPQNATAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPAD 383 Query: 332 K--EEQSNYEINTKSIATTHDNYKLERLSIAVVVNK-GRLTEVLGRSADQGKIDSYLAEI 388 K + N+E++ T +L RLS+AVVV+ + G + LA Sbjct: 384 KRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAADLARF 443 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALV 444 ++V A G ++ RGD++++ ++ F + Q F DI+ + Sbjct: 444 TRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYSQPWFWDIVKQ---------- 493 Query: 445 FLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDS 503 VG + + L LR L NI K E+ G + + G + ND ++L Sbjct: 494 -AVGVIFILILVFGVLRPVLTNITTGKSKELAGFGGDAELGRMGGL-DGELSNDRVSLGG 551 Query: 504 SNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + S + +++N+ + ++ + R A+++++W ++ Sbjct: 552 PQSILLPSPTEGYDAQLNA---------IKSLVAEDPGRVAQVVKEWINTDE 594 >gi|217976233|ref|YP_002360380.1| flagellar MS-ring protein [Methylocella silvestris BL2] gi|217501609|gb|ACK49018.1| flagellar M-ring protein FliF [Methylocella silvestris BL2] Length = 546 Score = 434 bits (1117), Expect = e-119, Method: Composition-based stats. Identities = 196/553 (35%), Positives = 312/553 (56%), Gaps = 12/553 (2%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M QL Q + + LG R++ LA + + + A +F++ P + LY L+ DV Sbjct: 1 MIGQKQLEQIWANLLKLGSRRLIALAMIGVSIFAMTGLAGYFLSRPALETLYAGLDRQDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +RI AL EA+I F ++ G++I V +AR+ LA +GLP +S N+G ELFDK+ S Sbjct: 61 SRIGAALKEADIAFDVNAEGNTILVRYGETARARMLLAEKGLP-NSPNAGNELFDKLGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLT+FMQE+TRVRALEGE+ARTIQ + G+ AARVH+VMPD GSFR+ P+ASV+IR Sbjct: 120 GLTTFMQEVTRVRALEGELARTIQLMRGVKAARVHVVMPDEGSFRRTREPPSASVVIRTE 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239 +A++IRHLVA+AVP + M +VTVL++ G LL + N++ + G L++ + + Sbjct: 180 MADDVGAAKSIRHLVASAVPGMTMEEVTVLNTEGVLLASGNDLADSAPGGMLTLERTVSQ 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 EI NI K L +LG+ NF+ +V LN D +Q E +Y+PDS+VERS+++++ Q S+ Sbjct: 240 EILDNIRKTLTPYLGLRNFQVSVATRLNTDKKQTNETIYNPDSRVERSVKVTRQNQLSQN 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 S +S TVE+N+P + + +S E + K EE +NYE+++K+IATT + ++ +S+ Sbjct: 300 STAQSPTTVERNLPQENVKADDGKQSNEESKKSEELTNYEVSSKTIATTSGGFAIDNISV 359 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AV++N+ L LG + L E+ +++++A G RGD I I+++DF++ Sbjct: 360 AVLINRASLMASLGDRPAPEALGKQLGELEQLIASAAGARKERGDAIKISAVDFIDAGRD 419 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 ++L R V+NA+ LV TLL+ + GL + Sbjct: 420 LEPQPPPPVSELLMRQSGNVLNAVTILVVTLLLIWFGL-------RPAARAILAAPAPAA 472 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 + + + G + N+ + NL + S + RL ++E +E Sbjct: 473 VEVAELETLSGEGAAGDANMEIGGWGP---QGEVNLIEDLTSAPRRSPQKRLEQIVEFDE 529 Query: 540 ERFAKILRKWARS 552 E+ A IL++W Sbjct: 530 EQAAAILKQWMSQ 542 >gi|896313|gb|AAB06801.1| flagellar MS ring [Pseudomonas aeruginosa] Length = 599 Score = 434 bits (1117), Expect = e-119, Method: Composition-based stats. Identities = 125/594 (21%), Positives = 248/594 (41%), Gaps = 68/594 (11%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F + + + R + L + + + A + P Y LY L D NR+ AL Sbjct: 27 LSFLDNLSEMTMLRQIGLLVGLAASVAIGFAVVLWSQQPDYKPLYGSLNGVDANRVVEAL 86 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + A+I +++ N ++ V + +G+AR+ +A+ G+ + +N G+E+ DK + G + FM+ Sbjct: 87 TAADIPYKVEPNSGALLVKADDLGRARMKVASAGVAPTDNNVGFEILDKEQALGTSQFME 146 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 R LEGE+ART+ S++ + AARVH+ +P F + +P+ASV++ + Sbjct: 147 ATNYRRGLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDDRKPSASVLVELYPGRSLEP 206 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIEM 243 AI +LVA +VP LD VTV+D G LL+ + E + K + ++ + Sbjct: 207 SQVMAIVNLVATSVPELDKSQVTVVDQKGNLLSDQQELSELTMADKQFDFTRRMEGLLTQ 266 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 ++ L L ++ V A+++ + +Y+PD RS + + + R +S P+ Sbjct: 267 RVHNILQPVLDNGRNKTEVSADVDFSAVESTSEMYNPDQPALRSEQHNNEE-RQNSSGPQ 325 Query: 304 SAVTVEQNMPHVSDRKVPLPRSL---------------------------------ENTD 330 N P + Sbjct: 326 GVPGALSNQPPGPASAPQQATASAPADYVAPGQPLKDANGQTIIDPKTGKPELAPYPTDK 385 Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEIN 389 + + NYE++ T +L RLS+AVV++ + G + Q LA Sbjct: 386 RDQTTRNYELDRSISYTKQQQGRLRRLSVAVVLDDQMKVDAKTGEVSHQPWSADELARFT 445 Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALVF 445 ++V + G ++ RGD++++ + F Q ++ Q F DI+ + Sbjct: 446 RLVQDSVGYDASRGDSVSVINAPFAPAQAEEIDSIPFYSQPWFWDIVKQ----------- 494 Query: 446 LVGTLLVTFLGLHALRR----LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501 ++G L + L LR + K GG + + G + +D +++ Sbjct: 495 VLGVLFILVLMFGVLRPVLSNITGGGKGKSLAGGGGGRDGDLALGESGLEGSLADDRVSI 554 Query: 502 DSSNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + + S + +++N+ + +++ + R A+++++W ++ Sbjct: 555 GGPSSILLPSPTEGYDAQLNA---------IKNLVAQDPGRVAQVVKEWINADE 599 >gi|161526230|ref|YP_001581242.1| flagellar MS-ring protein [Burkholderia multivorans ATCC 17616] gi|189349056|ref|YP_001944684.1| flagellar MS-ring protein [Burkholderia multivorans ATCC 17616] gi|160343659|gb|ABX16745.1| flagellar M-ring protein FliF [Burkholderia multivorans ATCC 17616] gi|189333078|dbj|BAG42148.1| flagellar M-ring protein [Burkholderia multivorans ATCC 17616] Length = 587 Score = 434 bits (1117), Expect = e-119, Method: Composition-based stats. Identities = 124/525 (23%), Positives = 220/525 (41%), Gaps = 29/525 (5%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA Sbjct: 79 LWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPAAQVHETRLKLAAL 138 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D FG++ F +++ RALEGE+ RTI+SI+ + ARVH+ +P Sbjct: 139 GLPKGGA-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLAIPK 196 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + V +AI +V++ VP++ +VT++D G LLT Sbjct: 197 PSVFVRDREAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGNLLT 256 Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 + L VQ ++ + I+ LA G N RS V A+++ + Y Sbjct: 257 QPASATGLDASQLKYVQQVERNTQKRIDAILAPIFGAGNARSQVSADIDFSKLEQTSESY 316 Query: 279 DPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH-------VSDRKVPLPRSLEN 328 P+ +++ S+ S S N P V+ P++ Sbjct: 317 GPNGSPQQAAIRSQQTSTSTELAQSGASGVPGALSNTPPQPASAPIVAGNGANAPQTTPV 376 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 +D+K++ +NYE++ ++RLS+AVVVN + + G Q + LA+I Sbjct: 377 SDRKDQTTNYELDKTIRHVEQPMGTVKRLSVAVVVNYQPVADAKGHVTMQPLPPAKLAQI 436 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G +++RGD++ + + F N+ D+++ + Sbjct: 437 EQLVKDAMGYDAKRGDSVNVMNSAFSTATDPNADLPWWRQPDMIALAKEAAKWLGIAAAA 496 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 L A+RR + + + D + + Sbjct: 497 AALYFMFVRPAMRRAFPPPEPAAPALALPGEP-------------VVLDGLPAPEPEDES 543 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ N Y R + + + A +++ W E Sbjct: 544 DPALLAFENEKNRYERNLDYAR--TIARQDPKIVATVVKNWVSDE 586 >gi|254251157|ref|ZP_04944475.1| Flagellar biosynthesis/type III secretory pathway lipoprotein [Burkholderia dolosa AUO158] gi|124893766|gb|EAY67646.1| Flagellar biosynthesis/type III secretory pathway lipoprotein [Burkholderia dolosa AUO158] Length = 588 Score = 434 bits (1117), Expect = e-119, Method: Composition-based stats. Identities = 129/528 (24%), Positives = 220/528 (41%), Gaps = 28/528 (5%) Query: 38 AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97 A + +P Y LY L D I AL +AN+ ++ +D G +I VPSS V + R+ L Sbjct: 76 ALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSSQVHETRLKL 135 Query: 98 AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 AA GLP S G+EL D FG++ F ++I RALEGE+ RTI+SI+ + ARVH+ Sbjct: 136 AAMGLPKGGS-VGFELMD-NQKFGISQFAEQINYQRALEGELQRTIESINAVRGARVHLA 193 Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 +P F + P+ASV + V +AI +V++ VP++ +VT++D G Sbjct: 194 IPKPSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGN 253 Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LLT + L VQ ++ + I+ LA G N RS V A+++ + Sbjct: 254 LLTQTASATGLDASQLKYVQQVERNTQKRIDAILAPIFGAGNARSQVSADIDFSKLEQTS 313 Query: 276 IVYDPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH-------VSDRKVPLPRS 325 Y P+ +++ S+ S S N P V+ P++ Sbjct: 314 ESYAPNGTPQQAAIRSQQTSTSTELAQSGASGVPGALSNTPPQPASAPIVAGNGQNGPQT 373 Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385 +D+K++ +NYE++ ++RLS+AVVVN + + G Q + L Sbjct: 374 TPVSDRKDQTTNYELDKTIRHVEQPMGSVKRLSVAVVVNYQPVADAKGHVTMQPLPPAKL 433 Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445 A+I ++V A G + +RGD++ + + F + DI++ + Sbjct: 434 AQIEQLVKDAMGYDQKRGDSVNVVNSAFSTATDPYADLPWWRQPDIIAIAKEAAKWLGIA 493 Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505 L A+RR + + + A + D Sbjct: 494 AAAAALYFMFVRPAMRRAFPPPEPAAPALAAPEDVVALDGLPAPA---------SADDEP 544 Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + N ++R + + + + A +++ W E Sbjct: 545 DTLLLGFENEKNRYERNLDYA-----RTIARQDPKIVATVVKNWVSDE 587 >gi|322833196|ref|YP_004213223.1| flagellar M-ring protein FliF [Rahnella sp. Y9602] gi|321168397|gb|ADW74096.1| flagellar M-ring protein FliF [Rahnella sp. Y9602] Length = 569 Score = 434 bits (1117), Expect = e-119, Method: Composition-based stats. Identities = 126/547 (23%), Positives = 237/547 (43%), Gaps = 55/547 (10%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 + P Y L+ L D I L++ NI ++ SDNG ++ +P+ V + R+ LA Sbjct: 44 MMLWAKQPTYKVLFSNLGDQDGGAIVTQLTQMNIPYQFSDNGGALLIPADKVYETRLKLA 103 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 A GLP + G+EL D+ FG++ F ++I RALEGE++RTI+++ + +ARVH+ + Sbjct: 104 AAGLPKGGA-VGFELMDQE-KFGISQFSEQINYQRALEGELSRTIETLGPVSSARVHLAI 161 Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 P F + P+ASV + AI ++V+++V L +VTV+D +G L Sbjct: 162 PKPSLFVREQKNPSASVTLNLQPGRALDDGQINAIVYMVSSSVSGLPPANVTVVDQSGHL 221 Query: 217 LT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LT ++ R++ L ++ ++ I L +G N + + A+++ +++ + Sbjct: 222 LTQSDNNGRDLNASQLKYANEVEGRLQRRIESILQPVVGNGNVHAQITAQIDYASREQTD 281 Query: 276 IVYDPDSKVERSIRLSKDAQRSE--------------TSQPESAVTVEQNMPHVSDRKVP 321 Y P+ +++ S+ S+ ++QP A T P ++ Sbjct: 282 ENYQPNGSADKAAVRSRQLSTSDQIGASSVGGVPGALSNQPAPAATAPVTNPPAANNANG 341 Query: 322 LPRSL---------------ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 + +++E +NYE++ T H ++RLS AVVVN Sbjct: 342 TQNQTGNNAQNAATTANANVPSNRRRDETTNYEVDRTITHTQHSAGAVQRLSAAVVVNYQ 401 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 + + D L +I+ +V A G + RGDT+ + + F E +SG + Sbjct: 402 VGPDGKAK----PLTDDQLKKIDDLVREAMGFSQERGDTLNVVNTPFNEAA-DDSGELPF 456 Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486 F ++NA +L+ ++ L +R + A+K ++ + P Sbjct: 457 WKQQAF---FDQLLNAGRWLLVLIVAWLLWRKMVRPMLRKQQAEKDAAAAAALAATMPQP 513 Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546 + ND + Q R++ V Q R+ + + + A ++ Sbjct: 514 EGSKPVKLSNDE----------LEKRKRSQQRVSVEVQTQ---RVQELADKDPRIVALVI 560 Query: 547 RKWARSE 553 R+W +E Sbjct: 561 RQWMSTE 567 >gi|221201939|ref|ZP_03574976.1| flagellar M-ring protein FliF [Burkholderia multivorans CGD2M] gi|221207554|ref|ZP_03580562.1| flagellar M-ring protein FliF [Burkholderia multivorans CGD2] gi|221172400|gb|EEE04839.1| flagellar M-ring protein FliF [Burkholderia multivorans CGD2] gi|221178359|gb|EEE10769.1| flagellar M-ring protein FliF [Burkholderia multivorans CGD2M] Length = 587 Score = 434 bits (1116), Expect = e-119, Method: Composition-based stats. Identities = 127/525 (24%), Positives = 224/525 (42%), Gaps = 29/525 (5%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA Sbjct: 79 LWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPAAQVHETRLKLAAL 138 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D FG++ F +++ RALEGE+ RTI+SI+ + ARVH+ +P Sbjct: 139 GLPKGGA-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLAIPK 196 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + V +AI +V++ VP++ +VT++D G LLT Sbjct: 197 PSVFVRDREAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGNLLT 256 Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 + L VQ ++ + I+ LA G N RS V A+++ + Y Sbjct: 257 QPASATGLDASQLKYVQQVERNTQKRIDAILAPIFGAGNARSQVSADIDFSKLEQTSESY 316 Query: 279 DPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH-------VSDRKVPLPRSLEN 328 P+ +++ S+ S S N P V+ P++ Sbjct: 317 GPNGSPQQAAIRSQQTSTSTELAQSGASGVPGALSNTPPQPASAPIVAGNGANAPQTTPV 376 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 +D+K++ +NYE++ ++RLS+AVVVN + + G Q + LA+I Sbjct: 377 SDRKDQTTNYELDKTIRHVEQPMGTVKRLSVAVVVNYQPVADAKGHVTMQPLPPAKLAQI 436 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G +++RGD++ + + F N+ D+++ + Sbjct: 437 EQLVKDAMGYDAKRGDSVNVMNSAFSTATDPNADLPWWRQPDMIALAKEAAKWLGIAAAA 496 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 L A+RR PP + A+ + D + + Sbjct: 497 AALYFMFVRPAMRR-------------AFPPPEPPAPALALPGEPVVLDGLPAPEPENES 543 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + ++ N Y R + + + A +++ W E Sbjct: 544 DTALLAFENEKNRYERNLDYAR--TIARQDPKIVATVVKNWVSDE 586 >gi|221215779|ref|ZP_03588738.1| flagellar M-ring protein FliF [Burkholderia multivorans CGD1] gi|221164315|gb|EED96802.1| flagellar M-ring protein FliF [Burkholderia multivorans CGD1] Length = 587 Score = 434 bits (1116), Expect = e-119, Method: Composition-based stats. Identities = 127/525 (24%), Positives = 224/525 (42%), Gaps = 29/525 (5%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA Sbjct: 79 LWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPAAQVHETRLKLAAL 138 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D FG++ F +++ RALEGE+ RTI+SI+ + ARVH+ +P Sbjct: 139 GLPKGGA-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLAIPK 196 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + V +AI +V++ VP++ +VT++D G LLT Sbjct: 197 PSVFVRDREAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGNLLT 256 Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 + L VQ ++ + I+ LA G N RS V A+++ + Y Sbjct: 257 QPASATGLDASQLKYVQQVERNTQKRIDAILAPIFGAGNARSQVSADIDFSKLEQTSESY 316 Query: 279 DPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH-------VSDRKVPLPRSLEN 328 P+ +++ S+ S S N P V+ P++ Sbjct: 317 GPNGSPQQAAIRSQQTSTSTELAQSGASGVPGALSNTPPQPASAPIVAGNGANAPQTTPV 376 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 +D+K++ +NYE++ ++RLS+AVVVN + + G Q + LA+I Sbjct: 377 SDRKDQTTNYELDKTIRHVEQPMGTVKRLSVAVVVNYQPVADAKGHVTMQPLPPAKLAQI 436 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G +++RGD++ + + F N+ D+++ + Sbjct: 437 EQLVKDAMGYDAKRGDSVNVVNSAFSTATDPNADLPWWRQPDMIALAKEAAKWLGIAAAA 496 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 L A+RR PP + A+ + D + + Sbjct: 497 AALYFMFVRPAMRR-------------AFPPPEPPAPALALPGEPVVLDGLPAPEPEDES 543 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + ++ N Y R + + + A +++ W E Sbjct: 544 DTALLAFENEKNRYERNLDYAR--TIARQDPKIVATVVKNWVSDE 586 >gi|26991058|ref|NP_746483.1| flagellar MS-ring protein [Pseudomonas putida KT2440] gi|24986091|gb|AAN69947.1|AE016633_5 flagellar basal-body M-ring protein FliF [Pseudomonas putida KT2440] Length = 592 Score = 434 bits (1116), Expect = e-119, Method: Composition-based stats. Identities = 126/591 (21%), Positives = 248/591 (41%), Gaps = 67/591 (11%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 + F ++ + + R + L + + + A + P Y LY L D ++ L Sbjct: 25 MAFLENISQMPMLRQIGLLVGLAASVAIGFAVVLWSQQPDYRPLYGSLSGMDTKQVMDTL 84 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + A+I + + N ++ V + + +AR+ LAA G+ S N G+EL DK G + FM+ Sbjct: 85 AAADIPYNVEPNSGALLVKADDLSRARLKLAAAGVAPSDGNVGFELLDKEQGLGTSQFME 144 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 R+LEGE+ART+ S++ + AARVH+ +P F + +P+ASV++ + Sbjct: 145 ATRYRRSLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDERKPSASVLVELYPGRALEA 204 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEM 243 AI +LVA +VP LD VTV+D G LL+ + + GK + ++ + Sbjct: 205 GQVMAIVNLVATSVPELDKSQVTVVDQKGNLLSEQIQDSALTQAGKQFDYSRRVESMLTQ 264 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 ++ L LG D +++ V A+L+ + ++PD RS + + + S P+ Sbjct: 265 RVHNILQPVLGNDRYKAEVSADLDFSAVESTSEQFNPDQPALRSEQSVDEQRASSQG-PQ 323 Query: 304 SAVTVEQNMPHVSDRKV----------------------------------PLPRSLENT 329 N P + P+ + Sbjct: 324 GVPGALSNQPPGAASAPQTTGGAATPAAAIQPGQPLVDANGQQIMDPATGQPMLAPYPSD 383 Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEI 388 +++ N+E++ T ++ RLS+AVVV ++ ++ G + LA Sbjct: 384 KRQQSTKNFELDRSISHTRQQQGRMARLSVAVVVDDQVKIDPATGDTTRAPWGAEDLARF 443 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALV 444 ++V A G ++ RGD++T+ ++ F ++ + Q F DI+ + Sbjct: 444 TRLVQDAVGFDASRGDSVTVINVPFAADRGEEIADIAFYQQPWFWDIVKQ---------- 493 Query: 445 FLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSS 504 ++G + + L LR + N + S + + G + ND ++L Sbjct: 494 -VLGVVFILVLVFGVLRPVLNNITGGGKQAAPDSDMELGGMMG--LDGELANDRVSLGGP 550 Query: 505 NQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + S S ++++N+ + ++ + R A++++ W ++ Sbjct: 551 TSILLPSPSEGYEAQLNA---------IKGLVAEDPGRVAQVVKDWINADE 592 >gi|330972435|gb|EGH72501.1| flagellar MS-ring protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 594 Score = 434 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 133/592 (22%), Positives = 246/592 (41%), Gaps = 66/592 (11%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 + F ++ + + R + L + + + A + P Y LY L D +I L Sbjct: 24 MSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + ANI++ + N ++ V S V +ARI LA G+ + +N G+E+ DK G + FM+ Sbjct: 84 TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 R LEGE+ARTI +++ + ARVH+ +P F + +P+ASV++ + Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEM 243 AI +LVA +VP L +TV+D G LL+ A E + GK + ++ + Sbjct: 204 SQVMAIINLVATSVPELSKSQITVVDQKGTLLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA--------- 294 + L LG D +++ V A ++ + ++PD RS + + Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNEQRSSSSSSGG 323 Query: 295 -QRSETSQPESAVTVEQ----------------------NMPHVSDRKVPLPRSLENTDK 331 + ++QP T Q N + D P Sbjct: 324 VPGALSNQPPGPATAPQTAGGGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPAD 383 Query: 332 K--EEQSNYEINTKSIATTHDNYKLERLSIAVVVNK-GRLTEVLGRSADQGKIDSYLAEI 388 K + N+E++ T +L RLS+AVVV+ + G + LA Sbjct: 384 KRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAADLARF 443 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALV 444 ++V A G ++ RGD++++ ++ F + Q F DI+ + Sbjct: 444 TRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYSQPWFWDIVKQ---------- 493 Query: 445 FLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDS 503 VG + + L LR L+NI + K+ E+ G + + G + ND ++L Sbjct: 494 -AVGVIFILILVFGVLRPVLNNITNGKRKELAGFGGDAELGGMGGL-DGELSNDRVSLGG 551 Query: 504 SNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + S + +++N+ + ++ + R A+++++W ++ Sbjct: 552 PQSILLPSPTEGYDAQLNA---------IKSLVAEDPGRVAQVVKEWINTDE 594 >gi|238028887|ref|YP_002913118.1| flagellar MS-ring protein [Burkholderia glumae BGR1] gi|237878081|gb|ACR30414.1| Flagellar M-ring protein FliF [Burkholderia glumae BGR1] Length = 599 Score = 434 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 133/526 (25%), Positives = 221/526 (42%), Gaps = 25/526 (4%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +ANI ++ +D G +I VP+S V + R+ LAA G Sbjct: 84 WSRAPDYRVLYSNLSDRDGGAIITALQQANIPYQFADAGGAILVPASQVHETRLRLAAMG 143 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RTI SI+ + +ARVH+ +P Sbjct: 144 LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELERTIASINAVRSARVHLAIPKP 201 Query: 162 GSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV + V AI +VA+ VP++ +VT++D G LL+ Sbjct: 202 SVFVRDREAPSASVFVDLYPGRVLDDGQVLAITRMVASGVPDMPAKNVTIVDQDGNLLSQ 261 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ ++H + I+ LA G N RS V A+++ + Y Sbjct: 262 QPSSSGLDANQLKYVQQVEHNTQKRIDAILAPMFGAGNTRSQVSADIDFTRSEQTSESYA 321 Query: 280 PDSK----VERSIRLSKDAQRSETSQPESAVTVEQNMPH-------VSDRKVPLPRSLEN 328 P+ RS + S + S S N P Sbjct: 322 PNGTQQQAAIRSQQTS-SSVESAQSGAGGVPGALSNTPPQPASAPITGASGAAGTPPTPI 380 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 +D+K+ +NYE++ T ++RLS+AVVVN + + G Q L ++ Sbjct: 381 SDRKDSTTNYELDKTVRHTEAPTGGIKRLSVAVVVNNLPVVDAKGHVTMQPLTADKLKQV 440 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G +++RGD++ + + F + D+++ + Sbjct: 441 EQLVKDAMGYDAKRGDSVNVVNSVFTTTADPLADLPWWRQPDMIALAKDAAKWLGIAAAA 500 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 L A+RR +A + L P A+ P+ +A DS + Sbjct: 501 AALYFMFVRPAMRRAFPPPEAAVANPALAAAL-GSPDEPALDGLPAPDSVVAEDSPEAAL 559 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIE-INEERFAKILRKWARSE 553 + + + +L MI + + A +++ W E Sbjct: 560 LAFEAD-------KHRYERNLDYAKMIARQDPKIVAAVVKNWVSDE 598 >gi|167568365|ref|ZP_02361239.1| flagellar MS-ring protein [Burkholderia oklahomensis C6786] Length = 554 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 130/525 (24%), Positives = 220/525 (41%), Gaps = 21/525 (4%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G ++ VP++ V + R+ LA+ G Sbjct: 37 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAVLVPANQVHETRLKLASMG 96 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RTI+SI+ + +ARVH+ +P Sbjct: 97 LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTIESINTVRSARVHLAIPKP 154 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ V + A+ +V+++VP++ +VT++D G LLT Sbjct: 155 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 214 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 215 TASASGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 274 Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH--------VSDRKVPLPRSLEN 328 P+ +++ S+ + S N P S+ + P + Sbjct: 275 PNGAPQQTAIRSQQTSTATELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 334 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 +D+K+ +NYE++ ++RLS+AVVVN + GR Q LA+I Sbjct: 335 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPAADAKGRVTMQPLTAEKLAQI 394 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G + +RGD++ + + F + D++ V Sbjct: 395 QQLVKDAMGYDEKRGDSVNVVNSAFSTAADPFADLPWWRQPDMIELGKDIAKWLGVAAAA 454 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 L ALRR P + GL D L + D Sbjct: 455 AALYFMFVRPALRRAFPPPAEPAA---AAVPALDGPNDAIALDGLPSPDKKQL-ADEDDE 510 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 +S N Y R + + + A +++ W E Sbjct: 511 HPALLAFESEKNRYERNLDYAR--TIARQDPKIVATVVKNWVSDE 553 >gi|146282929|ref|YP_001173082.1| flagellar MS-ring protein [Pseudomonas stutzeri A1501] gi|145571134|gb|ABP80240.1| flagellar M-ring protein [Pseudomonas stutzeri A1501] Length = 585 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 126/591 (21%), Positives = 247/591 (41%), Gaps = 64/591 (10%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y L L D N++ L Sbjct: 15 LSFLENLSEMSMLRQIGLLVGLAASVAMGFAVVLWSQQPDYRPLLGSLAGMDANQVMETL 74 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + A+I + + N ++ V ++ + +AR+ LA G+ + SN G+E+ DK G + FM+ Sbjct: 75 AAADIAYTVEPNSGALLVKANDLARARLKLAGAGIAPADSNIGFEILDKDQGLGTSQFME 134 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 R LEGE+ RTI S++ + ARVH+ +P F + +P+ASV++ + Sbjct: 135 ATRYRRGLEGELGRTISSLNNVKGARVHLAIPKSSVFVRDERKPSASVLVELYPGRALEP 194 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIEM 243 AI +LVA +VP L+ +TV+D G LL+ + E ++ GK + ++ Sbjct: 195 SQVMAIINLVATSVPELNKSQITVVDQKGNLLSDQQELTELSMAGKQFDYSRRMESLYTQ 254 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 ++ L LG +++ V A+++ + ++PD RS + + ++S + P+ Sbjct: 255 RVHNILQPVLGSGRYKAEVSADVDFSAVESTSETFNPDQPALRSEQSVNEQRQS-SLPPQ 313 Query: 304 SAVTVEQNMPHVSD----------------------------------RKVPLPRSLENT 329 N P P+ Sbjct: 314 GVPGALSNQPPGPASAPEQANQAAAAAGAVAPGQPLVDANGQQIMDPVTGQPMLAPFPAD 373 Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEIN 389 +++ NYE++ T + +L RLS+AVVV+ G LA Sbjct: 374 KREQATRNYELDRSISYTKQQHGRLRRLSVAVVVDDQMSLNAAGEMVRVPWNADDLARFT 433 Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTV-----QVSFMDILSRHFATVINALV 444 ++V A G ++ RGD++++ + F+ + + Q F D++ + V+ LV Sbjct: 434 RLVQDAVGFDASRGDSVSVINTAFVADSFGETFEEIPFYSQPWFWDVV-KQVLGVLFILV 492 Query: 445 FLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSS 504 + G L L+ L N + K+ +V G G + ND ++L Sbjct: 493 LVFGVL------RPVLKSLTNPNAGKELQVAGMPGELGEDEG---LDGGLANDRVSLSGP 543 Query: 505 NQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + S S ++++N+ + +++ + R A+++++W ++ Sbjct: 544 QNILLPSPSEGYEAQLNA---------IKNLVADDPGRVAQVVKEWINADE 585 >gi|310767344|gb|ADP12294.1| flagellar MS-ring protein [Erwinia sp. Ejp617] Length = 569 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 131/546 (23%), Positives = 235/546 (43%), Gaps = 54/546 (9%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y L+ L D I L++ N+ ++ D G ++ VP++ V + R+ LA+Q Sbjct: 46 LWAKQPDYRVLFSNLSNEDGGTIVTQLTQMNVPYKFDDQGGALLVPAAQVHELRLRLASQ 105 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL DK FG++ F +++ RALEGE+ARTI ++ + ARVH+ MP Sbjct: 106 GLPKGGA-VGFELLDKE-KFGISQFSEQVNYQRALEGELARTISTLGPVKDARVHLAMPK 163 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + A+ H+V+++V + G+VTV+D G+LLT Sbjct: 164 PTLFVREQKSPSASVTLALQPGRALDEGQINAVVHMVSSSVAGMPPGNVTVVDQAGRLLT 223 Query: 219 ANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 N+ R++ L ++ + I L LG N + V A+++ + ++ + Sbjct: 224 QNDSGGRDLNDTQLKYANDVETRYQQRIEAILGPILGNGNVHAQVTAQIDFNKREKTDEQ 283 Query: 278 YDPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDRKVPLP----------- 323 Y P+S+ ++ S+ SE S N P ++ P Sbjct: 284 YSPNSQPDQQAIRSRQTSNSEQLGGSSAGGVPGALSNQPAPANAAPVTPANNNANNANAN 343 Query: 324 ---------------RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368 +++ + + + +NYE+N + T + +++RLS+AVVVN Sbjct: 344 ANNGQPANNAANAAQKTVPSNTRSDNTTNYEVNRTILHTKMNVGEVQRLSVAVVVNY--- 400 Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSF 428 D+ + +I + A G + +RGD++ + + F +N + Sbjct: 401 -RADAAGKPIALKDAQIKQIENLTREAMGFSEQRGDSLNVVNSQFTDNSDLAAELPFWKQ 459 Query: 429 MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSA 488 + + F LV +V +L L LRR A + + S A Sbjct: 460 PAFIDQLFNAGRWLLVLIVAFILYRKLVSPQLRRKAEQQKAAEEAAINAARSSTRDEGVA 519 Query: 489 VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRK 548 V S ++D + R Q R+++ V Q R+ M E + A ++R+ Sbjct: 520 V-------------SLSKDELNQERKSQHRMSAEVLSQ---RIREMSENDPRVVALVIRQ 563 Query: 549 WARSEI 554 W + E+ Sbjct: 564 WMKDEL 569 >gi|66046686|ref|YP_236527.1| flagellar MS-ring protein [Pseudomonas syringae pv. syringae B728a] gi|63257393|gb|AAY38489.1| Flagellar FliF M-ring protein [Pseudomonas syringae pv. syringae B728a] Length = 594 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 133/592 (22%), Positives = 246/592 (41%), Gaps = 66/592 (11%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 + F ++ + + R + L + + + A + P Y LY L D +I L Sbjct: 24 MSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + ANI++ + N ++ V S V +ARI LA G+ + +N G+E+ DK G + FM+ Sbjct: 84 TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 R LEGE+ARTI +++ + ARVH+ +P F + +P+ASV++ + Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEM 243 AI +LVA +VP L +TV+D G LL+ A E + GK + ++ + Sbjct: 204 SQVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA--------- 294 + L LG D +++ V A ++ + ++PD RS + + Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNEQRSSSSSSGG 323 Query: 295 -QRSETSQPESAVTVEQ----------------------NMPHVSDRKVPLPRSLENTDK 331 + ++QP T Q N + D P Sbjct: 324 VPGALSNQPPGPATAPQTAGGGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPAD 383 Query: 332 K--EEQSNYEINTKSIATTHDNYKLERLSIAVVVNK-GRLTEVLGRSADQGKIDSYLAEI 388 K + N+E++ T +L RLS+AVVV+ + G + LA Sbjct: 384 KRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAADLARF 443 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALV 444 ++V A G ++ RGD++++ ++ F + Q F DI+ + Sbjct: 444 TRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYSQPWFWDIVKQ---------- 493 Query: 445 FLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDS 503 VG + + L LR L+NI + K+ E+ G + + G + ND ++L Sbjct: 494 -AVGVIFILILVFGVLRPVLNNITNGKRKELAGFGGDAELGGMGGL-DGELSNDRVSLGG 551 Query: 504 SNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + S + +++N+ + ++ + R A+++++W ++ Sbjct: 552 PQSILLPSPTEGYDAQLNA---------IKSLVAEDPGRVAQVVKEWINTDE 594 >gi|330876010|gb|EGH10159.1| flagellar MS-ring protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330967111|gb|EGH67371.1| flagellar MS-ring protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 594 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 133/593 (22%), Positives = 240/593 (40%), Gaps = 68/593 (11%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y LY L D +I L Sbjct: 24 LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + ANI++ + N ++ V S V +ARI LA G+ + +N G+E+ DK G + FM+ Sbjct: 84 TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 R LEGE+ARTI +++ + ARVH+ +P F + +P+ASV++ + Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEM 243 AI +LVA +VP L +TV+D G LL+ A E + GK + ++ + Sbjct: 204 SQVLAIINLVATSVPELSKSQITVVDQKGTLLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 + L LG D +++ V A ++ + ++PD RS + + QRS +S Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNE-QRSSSSSTG 322 Query: 304 SAVTVEQNMPHV-----------------------------------SDRKVPLPRSLEN 328 N P P Sbjct: 323 GVPGALSNQPPGPATAPQNAAAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPA 382 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK-GRLTEVLGRSADQGKIDSYLAE 387 + + N+E++ T +L RLS+AVVV+ + G + + LA Sbjct: 383 DKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVSRAPWSAADLAR 442 Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINAL 443 ++V A G ++ RGD++++ ++ F + Q F DI+ + Sbjct: 443 FTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYTQPWFWDIVKQ--------- 493 Query: 444 VFLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALD 502 VG + + L LR L+NI K E+ G G + ND ++L Sbjct: 494 --AVGVIFILILVFGVLRPVLNNITSGKSKELAGFGG-DAELGGMGGLDGELSNDRVSLG 550 Query: 503 SSNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + S + +++N+ + ++ + R A+++++W ++ Sbjct: 551 GPQSILLPSPTEGYDAQLNA---------IKSLVAEDPGRVAQVVKEWINTDE 594 >gi|85713555|ref|ZP_01044545.1| flagellar M-ring protein [Nitrobacter sp. Nb-311A] gi|85699459|gb|EAQ37326.1| flagellar M-ring protein [Nitrobacter sp. Nb-311A] Length = 541 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 146/552 (26%), Positives = 252/552 (45%), Gaps = 16/552 (2%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + LL F K LG +R++ + +V V I F V +P L+ L V D + I Sbjct: 1 MQGLLAFLKG---LGASRLMAMVAVTTVLIAFFAFVIMRVTTPQMTTLFTDLSVEDSSGI 57 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L I F + ++G+ I VP V + R+ LA GLP GYE+FDK ++ G T Sbjct: 58 IKDLERQAIPFELRNDGAVIMVPKDKVTRLRMKLAEAGLPKGGG-VGYEIFDKSDALGTT 116 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 SF+Q I R+RALEGE+ARTI++I I ARVH+V+P+ F + +P+AS+++R Sbjct: 117 SFVQNINRLRALEGELARTIRAIDRIQDARVHLVLPERPLFTREAPQPSASIVVRVRGGL 176 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEM 243 + AIRHLVA+AV L V+++D TG+LL A + + Sbjct: 177 EPQQIRAIRHLVASAVNGLKPQRVSIVDETGQLLADGSTTDADGVTGDERRTAFEKRMRS 236 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 + +++ +G R + A+ + + +DP+ +V RS + +++ S T+ Sbjct: 237 QVEAIVSSVVGNGRARVQLSADFDYNKITQTSDTFDPEGRVLRSSQTREES--SLTADNN 294 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 VTV +P P ++ + + K EE +NYEI+ + + ++ R+S+AV+V Sbjct: 295 GQVTVNNELPGNQPSDNPN-QARDQSKKSEETNNYEISRTTKTEVSEAGRVNRISVAVLV 353 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 + + G+ + L I +V +A G + +RGD + + ++ F E Sbjct: 354 DGTYAKDDKGQMVYTERSKEQLDRIATLVRSAIGFDQKRGDQVEVVNLRFAEPPAIVPLA 413 Query: 424 VQVSFMDIL---SRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 + ++ + V + L+V F+ + L + + V + L Sbjct: 414 EPAGLLGMIALTKDDVMYFVELAVMALLGLVVVFMVIRPLVQRILAAEPAAASVPPAAAL 473 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 P ++A T N +++ Q I +++ V QS R+ + E N Sbjct: 474 PVPADANAQPTATGQNLIPGSNATAQLI------DVAQVQGQVHAQSVHRVGELAERNPT 527 Query: 541 RFAKILRKWARS 552 A I+R+W Sbjct: 528 ETASIIRQWLAE 539 >gi|28869162|ref|NP_791781.1| flagellar M-ring protein FliF [Pseudomonas syringae pv. tomato str. DC3000] gi|213967561|ref|ZP_03395709.1| flagellar M-ring protein FliF [Pseudomonas syringae pv. tomato T1] gi|301385734|ref|ZP_07234152.1| flagellar MS-ring protein [Pseudomonas syringae pv. tomato Max13] gi|302059423|ref|ZP_07250964.1| flagellar MS-ring protein [Pseudomonas syringae pv. tomato K40] gi|302134812|ref|ZP_07260802.1| flagellar MS-ring protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28852402|gb|AAO55476.1| flagellar M-ring protein FliF [Pseudomonas syringae pv. tomato str. DC3000] gi|213927862|gb|EEB61409.1| flagellar M-ring protein FliF [Pseudomonas syringae pv. tomato T1] Length = 594 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 133/593 (22%), Positives = 240/593 (40%), Gaps = 68/593 (11%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y LY L D +I L Sbjct: 24 LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + ANI++ + N ++ V S V +ARI LA G+ + +N G+E+ DK G + FM+ Sbjct: 84 TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 R LEGE+ARTI +++ + ARVH+ +P F + +P+ASV++ + Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEM 243 AI +LVA +VP L +TV+D G LL+ A E + GK + ++ + Sbjct: 204 SQVLAIINLVATSVPELSKSQITVVDQKGTLLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 + L LG D +++ V A ++ + ++PD RS + + QRS +S Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNE-QRSSSSSTG 322 Query: 304 SAVTVEQNMPHV-----------------------------------SDRKVPLPRSLEN 328 N P P Sbjct: 323 GVPGALSNQPPGPATAPQNAAAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPA 382 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK-GRLTEVLGRSADQGKIDSYLAE 387 + + N+E++ T +L RLS+AVVV+ + G + + LA Sbjct: 383 DKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVSRAPWSAADLAR 442 Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINAL 443 ++V A G ++ RGD++++ ++ F + Q F DI+ + Sbjct: 443 FTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYSQPWFWDIVKQ--------- 493 Query: 444 VFLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALD 502 VG + + L LR L+NI K E+ G G + ND ++L Sbjct: 494 --AVGVIFILILVFGVLRPVLNNITSGKSKELAGFGG-DAELGGMGGLDGELSNDRVSLG 550 Query: 503 SSNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + S + +++N+ + ++ + R A+++++W ++ Sbjct: 551 GPQSILLPSPTEGYDAQLNA---------IKSLVAEDPGRVAQVVKEWINTDE 594 >gi|330953748|gb|EGH54008.1| flagellar MS-ring protein [Pseudomonas syringae Cit 7] Length = 594 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 133/592 (22%), Positives = 244/592 (41%), Gaps = 66/592 (11%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 + F ++ + + R + L + + + A + P Y LY L D +I L Sbjct: 24 MSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + ANI++ + N ++ V S V +ARI LA G+ + +N G+E+ DK G + FM+ Sbjct: 84 TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 R LEGE+ARTI +++ + ARVH+ +P F + +P+ASV++ + Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEM 243 AI +LVA +VP L +TV+D G LL+ A E + GK + ++ + Sbjct: 204 SQVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMESMLTQ 263 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA--------- 294 + L LG D +++ V A ++ + ++PD RS + + Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNEQRSSSSSSGG 323 Query: 295 -QRSETSQPESAVTVEQ----------------------NMPHVSDRKVPLPRSLENTDK 331 + ++QP T Q N + D P Sbjct: 324 VPGALSNQPPGPATAPQTAGGGAAGAAGPIAPGQPLLDANGQQIMDPGTGQPALAPYPAD 383 Query: 332 K--EEQSNYEINTKSIATTHDNYKLERLSIAVVVNK-GRLTEVLGRSADQGKIDSYLAEI 388 K + N+E++ T +L RLS+AVVV+ + G + LA Sbjct: 384 KRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAADLARF 443 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALV 444 ++V A G ++ RGD++++ ++ F + Q F DI+ + Sbjct: 444 TRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYSQPWFWDIVKQ---------- 493 Query: 445 FLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDS 503 VG + + L LR L+NI + K+ E+ G G + ND ++L Sbjct: 494 -AVGVIFILILVFGVLRPVLNNITNGKRKELAGFGG-DAELGGMGGLDGELSNDRVSLGG 551 Query: 504 SNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + S + +++N+ + ++ + R A+++++W ++ Sbjct: 552 PQSILLPSPTEGYDAQLNA---------IKSLVAEDPGRVAQVVKEWINTDE 594 >gi|237799234|ref|ZP_04587695.1| flagellar MS-ring protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022089|gb|EGI02146.1| flagellar MS-ring protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 595 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 131/592 (22%), Positives = 244/592 (41%), Gaps = 65/592 (10%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y LY L D +I L Sbjct: 24 LSFLENLSEMTMLRQVGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGLDSKQIMETL 83 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + ANI++ + N ++ V S V +ARI LA G+ + +N G+E+ DK G + FM+ Sbjct: 84 TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 R LEGE+ARTI +++ + AARVH+ +P F + +P+ASV++ + Sbjct: 144 ATRYRRGLEGELARTISALNNVKAARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEM 243 AI +LVA +VP L +TV+D G LL+ A E + GK + ++ + Sbjct: 204 SQVLAIINLVATSVPELSKSQITVVDQKGTLLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA--------- 294 + L LG D +++ V A ++ + ++PD RS + + Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNEQRSSSSGSGG 323 Query: 295 -QRSETSQPESAVTVEQ----------------------NMPHVSDRKVPLPRSLE--NT 329 + ++QP T Q N + D P Sbjct: 324 VPGALSNQPPGPATAPQTAGAGGAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPFPAD 383 Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK-GRLTEVLGRSADQGKIDSYLAEI 388 + + N+E++ T +L RLS+AVVV+ + G + + LA Sbjct: 384 KRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVSRAPWSAADLARF 443 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALV 444 ++V A G ++ RGD++++ ++ F + Q F D++ + Sbjct: 444 TRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYSQPWFWDLVKQ---------- 493 Query: 445 FLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDS 503 VG + + L LR L+NI + K ++ G + ND ++L Sbjct: 494 -AVGVIFILILVFGVLRPVLNNITNGKSKQLAAFGGGDAELGGMGGLDGELSNDRVSLGG 552 Query: 504 SNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + S + +++N+ + ++ + R A+++++W ++ Sbjct: 553 PQSILLPSPTEGYDAQLNA---------IKSLVAEDPGRVAQVVKEWINTDE 595 >gi|284159411|ref|YP_440758.3| flagellar MS-ring protein [Burkholderia thailandensis E264] gi|83653465|gb|ABC37528.1| flagellar M-ring protein FliF [Burkholderia thailandensis E264] Length = 677 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 135/525 (25%), Positives = 221/525 (42%), Gaps = 22/525 (4%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 161 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 220 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++S++ + AARVH+ +P Sbjct: 221 LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTVESVNAVRAARVHLAIPKP 278 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ V + AI LV+++VP++ +VT++D G LLT Sbjct: 279 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAITRLVSSSVPDMPAKNVTIVDQDGNLLTQ 338 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 339 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYA 398 Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH--------VSDRKVPLPRSLEN 328 P+ ++S S+ S S N P S+ + P + Sbjct: 399 PNGTPQQSAIRSQQTSTSTELAQSGTSGVPGALSNTPPQPASAPIVASNGQPAAPAATPV 458 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 +D+K+ +NYE++ ++RLS+AVVVN T+ GR Q LA++ Sbjct: 459 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLTADKLAQV 518 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G + +RGD++ + + F + D++ V Sbjct: 519 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 578 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 L ALRR V P + GL D L + Sbjct: 579 AALYFMFVRPALRRAFPPPAEPAAAVPALDG----PDDALALDGLPSPDKKQLAE-EDEE 633 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 +S N Y R + + + A +++ W E Sbjct: 634 HPALLAFESEKNRYERNLDYAR--TIARQDPKIVATVVKNWVSDE 676 >gi|171321708|ref|ZP_02910625.1| flagellar M-ring protein FliF [Burkholderia ambifaria MEX-5] gi|171093009|gb|EDT38241.1| flagellar M-ring protein FliF [Burkholderia ambifaria MEX-5] Length = 587 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 126/528 (23%), Positives = 218/528 (41%), Gaps = 29/528 (5%) Query: 38 AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97 A + +P Y LY L D I AL +AN+ ++ +D G +I VPS+ V + R+ L Sbjct: 76 ALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSNQVHETRLKL 135 Query: 98 AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 AA GLP S G+EL D FG++ F +++ RALEGE+ RTI+SI+ + ARVH+ Sbjct: 136 AALGLPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLA 193 Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 +P F + P+ASV + V +AI +V++ VP++ +VT++D G Sbjct: 194 IPKPSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGN 253 Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LLT + L VQ ++ + I+ LA G N RS V A+++ + Sbjct: 254 LLTQTASASGLDASQLKYVQQVERNTQKRIDAILAPIFGTGNARSQVSADIDFSKLEQTS 313 Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPH-------VSDRKVPLPRS 325 Y P+ +++ S+ + A V N P V+ +S Sbjct: 314 ESYAPNGTPQQAAIRSQQTSSATELAQGGASGVPGALSNTPPQPASAPIVAGNGQNGAQS 373 Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385 +D+K++ +NYE++ ++RLS+AVVVN + + G Q L Sbjct: 374 TPVSDRKDQTTNYELDKTIRHVEQPMGNVKRLSVAVVVNYQPVADAKGHVTMQPLPPPKL 433 Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445 A+I ++V A G + +RGD++ + + F + D+++ + Sbjct: 434 AQIEQLVKDAMGYDEKRGDSVNVVNSAFSSVGDPYADLPWWRQPDMIAMAKEAAKWLGIA 493 Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505 L A+RR + + A P+ Sbjct: 494 AAAAALYFMFVRPAMRRAFPPPEPAAPALAAPDDPVALDGLPAPERADEPDP-------- 545 Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + N ++R + + + + A +++ W E Sbjct: 546 --LLLGFENEKNRYERNLDYA-----RTIARQDPKIVATVVKNWVSDE 586 >gi|331017004|gb|EGH97060.1| flagellar MS-ring protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 594 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 133/593 (22%), Positives = 240/593 (40%), Gaps = 68/593 (11%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y LY L D +I L Sbjct: 24 LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGIDSKQIMDTL 83 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + ANI++ + N ++ V S V +ARI LA G+ + +N G+E+ DK G + FM+ Sbjct: 84 TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 R LEGE+ARTI +++ + ARVH+ +P F + +P+ASV++ + Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEM 243 AI +LVA +VP L +TV+D G LL+ A E + GK + ++ + Sbjct: 204 SQVLAIINLVATSVPELSKSQITVVDQKGTLLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 + L LG D +++ V A ++ + ++PD RS + + QRS +S Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNE-QRSSSSSTG 322 Query: 304 SAVTVEQNMPHV-----------------------------------SDRKVPLPRSLEN 328 N P P Sbjct: 323 GVPGALSNQPPGPATAPQNAAAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPA 382 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK-GRLTEVLGRSADQGKIDSYLAE 387 + + N+E++ T +L RLS+AVVV+ + G + + LA Sbjct: 383 DKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVSRAPWSAADLAR 442 Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINAL 443 ++V A G ++ RGD++++ ++ F + Q F DI+ + Sbjct: 443 FTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYSQPWFWDIVKQ--------- 493 Query: 444 VFLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALD 502 VG + + L LR L+NI K E+ G G + ND ++L Sbjct: 494 --AVGVIFILILVFGVLRPVLNNITSGKSKELAGFGG-DAELGGMGGLDGELSNDRVSLG 550 Query: 503 SSNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + S + +++N+ + ++ + R A+++++W ++ Sbjct: 551 GPQSILLPSPTEGYDAQLNA---------IKSLVAEDPGRVAQVVKEWINTDE 594 >gi|302185562|ref|ZP_07262235.1| flagellar MS-ring protein [Pseudomonas syringae pv. syringae 642] Length = 594 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 133/592 (22%), Positives = 246/592 (41%), Gaps = 66/592 (11%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 + F ++ + + R + L + + + A + P Y LY L D +I L Sbjct: 24 MSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + ANI++ + N ++ V S V +ARI LA G+ + +N G+E+ DK G + FM+ Sbjct: 84 TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 R LEGE+ARTI +++ + ARVH+ +P F + +P+ASV++ + Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEM 243 AI +LVA +VP L +TV+D G LL+ A E + GK + ++ + Sbjct: 204 SQVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMESMLTQ 263 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA--------- 294 + L LG D +++ V A ++ + ++PD RS + + Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNEQRSSGSSSGG 323 Query: 295 -QRSETSQPESAVTVEQ----------------------NMPHVSDRKVPLPRSLENTDK 331 + ++QP T Q N + D P Sbjct: 324 VPGALSNQPPGPATAPQTAGGGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPAD 383 Query: 332 K--EEQSNYEINTKSIATTHDNYKLERLSIAVVVNK-GRLTEVLGRSADQGKIDSYLAEI 388 K + N+E++ T +L RLS+AVVV+ + G + LA Sbjct: 384 KRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAADLARF 443 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALV 444 ++V A G ++ RGD++++ ++ F + Q F DI+ + Sbjct: 444 TRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYSQPWFWDIVKQ---------- 493 Query: 445 FLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDS 503 VG + + L LR L+NI + K+ E+ G + + G + ND ++L Sbjct: 494 -AVGVIFILILVFGVLRPVLNNITNGKRKELAGFGGDAELGGMGGL-DGELSNDRVSLGG 551 Query: 504 SNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + S + +++N+ + ++ + R A+++++W ++ Sbjct: 552 PQSILLPSPTEGYDAQLNA---------IKSLVAEDPGRVAQVVKEWINTDE 594 >gi|205360167|ref|ZP_02835012.2| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205340693|gb|EDZ27457.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 579 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 131/542 (24%), Positives = 233/542 (42%), Gaps = 52/542 (9%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 63 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 122 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 123 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 180 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + A+ HLV++AV L G+VT++D +G LLT Sbjct: 181 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 240 Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 +N R++ L ++ I+ I L+ +G N + V A+L+ ++ E Sbjct: 241 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 300 Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------------HVSDRKV 320 Y P+ ++ S+ SE P N P + + Sbjct: 301 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 360 Query: 321 PLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373 P + N++ + E SNYE++ T + +ERLS+AVVVN L + Sbjct: 361 PQTSTSNNSNNAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP 420 Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433 + +I + A G + +RGDT+ + + F + ++ F S Sbjct: 421 L----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDDTGGELPFWQQQS 473 Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493 ++ A +L+ ++ L A+R ++ + + AV L Sbjct: 474 -FIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRL 531 Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ + +NQ R+ + V Q R+ M + + A ++R+W ++ Sbjct: 532 SKDEQLQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 577 Query: 554 IE 555 E Sbjct: 578 HE 579 >gi|327481269|gb|AEA84579.1| flagellar MS-ring protein [Pseudomonas stutzeri DSM 4166] Length = 594 Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 126/591 (21%), Positives = 247/591 (41%), Gaps = 64/591 (10%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y L L D N++ L Sbjct: 24 LSFLENLSEMSMLRQIGLLVGLAASVAMGFAVVLWSQQPDYRPLLGSLAGMDANQVMETL 83 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + A+I + + N ++ V ++ + +AR+ LA G+ + SN G+E+ DK G + FM+ Sbjct: 84 AAADIAYTVEPNSGALLVKANDLARARLKLAGAGIAPADSNIGFEILDKDQGLGTSQFME 143 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 R LEGE+ RTI S++ + ARVH+ +P F + +P+ASV++ + Sbjct: 144 ATRYRRGLEGELGRTISSLNNVKGARVHLAIPKSSVFVRDERKPSASVLVELYPGRALEP 203 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIEM 243 AI +LVA +VP L+ +TV+D G LL+ + E ++ GK + ++ Sbjct: 204 SQVMAIINLVATSVPELNKSQITVVDQKGNLLSDQQELTELSMAGKQFDYSRRMESLYTQ 263 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 ++ L LG +++ V A+++ + ++PD RS + + ++S + P+ Sbjct: 264 RVHNILQPVLGSGRYKAEVSADVDFSAVESTSETFNPDQPALRSEQSVNEQRQS-SLPPQ 322 Query: 304 SAVTVEQNMPHVSD----------------------------------RKVPLPRSLENT 329 N P P+ Sbjct: 323 GVPGALSNQPPGPASAPEQANQAAAAAGAVAPGQPLVDANGQQIMDPVTGQPMLAPFPAD 382 Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEIN 389 +++ NYE++ T + +L RLS+AVVV+ G LA Sbjct: 383 KREQATRNYELDRSISYTKQQHGRLRRLSVAVVVDDQMSLNAAGEMVRVPWNADDLARFT 442 Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTV-----QVSFMDILSRHFATVINALV 444 ++V A G ++ RGD++++ + F+ + + Q F D++ + V+ LV Sbjct: 443 RLVQDAVGFDASRGDSVSVINTAFVADSFGETFEEIPFYSQPWFWDVV-KQVLGVLFILV 501 Query: 445 FLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSS 504 + G L L+ L N + K+ +V G G + ND ++L Sbjct: 502 LVFGVL------RPVLKSLTNPNAGKELQVAGMPGELGEDEG---LDGGLANDRVSLSGP 552 Query: 505 NQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + S S ++++N+ + +++ + R A+++++W ++ Sbjct: 553 QNILLPSPSEGYEAQLNA---------IKNLVADDPGRVAQVVKEWINADE 594 >gi|229591853|ref|YP_002873972.1| flagellar MS-ring protein [Pseudomonas fluorescens SBW25] gi|229363719|emb|CAY51114.1| flagellar M-ring protein [Pseudomonas fluorescens SBW25] Length = 593 Score = 431 bits (1109), Expect = e-118, Method: Composition-based stats. Identities = 127/592 (21%), Positives = 239/592 (40%), Gaps = 65/592 (10%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y LY L D +I L Sbjct: 22 LSFLENLSEMTMLRQVGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMETL 81 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + A+I + + N ++ V + V +AR+ LAA G+ S SN G+E+ DK G + FM+ Sbjct: 82 AAADIAYTVEPNSGALLVKADDVARARMKLAAAGVTPSDSNIGFEILDKDQGLGTSQFME 141 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 R LEGE+ARTI S++ + ARVH+ +P F + +P+ASV++ + + Sbjct: 142 ATRYRRGLEGELARTISSLNNVKGARVHLAIPKSSVFVRDERKPSASVLVELFSGRSLEP 201 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEM 243 AI +LVA +VP L +TV+D G LL+ + GK + ++ + Sbjct: 202 GQVLAIVNLVATSVPELSKSQITVVDQKGNLLSDQGENSALTQAGKQFDYSRRVESMLTQ 261 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 ++ L LG D +++ V A+++ + ++PD RS + + + + + P+ Sbjct: 262 RVHNILQPVLGNDRYKAEVSADVDFSAVESTSEQFNPDQPALRSEQSTSEQRTAANGPPQ 321 Query: 304 SAVTVEQNMPHVSDRKV----------------------------------PLPRSLENT 329 N P P+ Sbjct: 322 GVPGALSNQPPAPASAPQTTGGAAATAGAIQPGQPLLDANGQQIMDPATGQPMLAPYPAD 381 Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEI 388 + + N+E++ T ++ RLS++VVV+ G LA Sbjct: 382 KRNQSTKNFELDRSISHTKQQQGRVNRLSVSVVVDDQVKVNAADGAVTRAPWSADELARF 441 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALV 444 ++V A G ++ RGD++++ +M F + Q F DI+ + Sbjct: 442 TRLVQDAVGFDASRGDSVSVINMPFSAERGEVIAEPAFYSQPWFWDIVKQ---------- 491 Query: 445 FLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDS 503 ++G L + L LR L+NI K ++ G + ND ++L Sbjct: 492 -VLGVLFILVLVFGVLRPVLNNITGNGKKQLAAFGGSDVELGGMGGLDGELANDRVSLGG 550 Query: 504 SNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + S S +++N+ + ++ + R A+++++W ++ Sbjct: 551 PQSILLPSPSEGYDAQLNA---------IKSLVAEDPGRVAQVVKEWINADE 593 >gi|198243509|ref|YP_002215117.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197938025|gb|ACH75358.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 576 Score = 431 bits (1109), Expect = e-118, Method: Composition-based stats. Identities = 131/542 (24%), Positives = 234/542 (43%), Gaps = 52/542 (9%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 60 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 119 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 120 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 177 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + A+ HLV++AV L G+VT++D +G LLT Sbjct: 178 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 237 Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 +N R++ L ++ I+ I L+ +G N + V A+L+ ++ E Sbjct: 238 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 297 Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------------HVSDRKV 320 Y P+ ++ S+ SE P N P + + Sbjct: 298 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 357 Query: 321 PLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373 P + N++ + E SNYE++ T + +ERLS+AVVVN L + Sbjct: 358 PQTSTSTNSNSAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP 417 Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433 + +I + A G + +RGDT+ + + F ++ ++ F S Sbjct: 418 L----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDNTGGELPFWQQQS 470 Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493 ++ A +L+ ++ L A+R ++ + + AV L Sbjct: 471 -FIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRL 528 Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ + +NQ R+ + V Q R+ M + + A ++R+W ++ Sbjct: 529 SKDEQLQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 574 Query: 554 IE 555 E Sbjct: 575 HE 576 >gi|296103558|ref|YP_003613704.1| flagellar MS-ring protein [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058017|gb|ADF62755.1| flagellar MS-ring protein [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 559 Score = 431 bits (1109), Expect = e-118, Method: Composition-based stats. Identities = 129/543 (23%), Positives = 236/543 (43%), Gaps = 51/543 (9%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 + SP Y LY L D I L++ NI +R +DNG ++ VP+ V + R+ LA Sbjct: 42 MVLWAKSPDYRTLYSNLSDQDGGAIVTQLTQMNIPYRFADNGGALEVPADKVHELRLRLA 101 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 QGLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ M Sbjct: 102 QQGLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAM 159 Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 P F + P+ASV + A+ HLV++AV L G+VT++D +G L Sbjct: 160 PKPSLFVREQKSPSASVTVNLEPGRALDEGQISAVTHLVSSAVAGLPPGNVTLVDQSGHL 219 Query: 217 LT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LT +N R++ L ++ ++ I L +G N + V A+++ ++ E Sbjct: 220 LTQSNTAGRDLNDAQLKYAADVEARLQRRIEAILGPVVGNSNVHAQVTAQIDFSNKEQTE 279 Query: 276 IVYDPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDRKV------------ 320 Y P+ +++ S+ +E + P N P ++ Sbjct: 280 EQYRPNGDPAQAVMRSRQVNENEQVGGAYPGGVPGALSNQPAPANAAPISTPPANQQNGQ 339 Query: 321 --------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372 + T+ + E +NYE++ T + ++RLS+AVVVN L Sbjct: 340 QNQQTTTSTASNAGPRTNSRNETTNYEVDRTIRHTKLNVGDIQRLSVAVVVNYKTLPNGK 399 Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDIL 432 + +I + A G + +RGD++ + + F + ++ F Sbjct: 400 PL----PLTAEQMKQIEDLTREAMGYSEKRGDSLNVVNSPFNP---VDETGGELPFWQQQ 452 Query: 433 SRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTG 492 + +++A +L+ ++ L +R A+ + + I + + AV Sbjct: 453 A-FIDQLMSAGRWLLVLIVAWLLWRKGVRPQLQRR-AEAEKAAREQINARQEVEEAVEVR 510 Query: 493 LMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 L ++ + +NQ R+ + V Q R+ M + + A ++R+W + Sbjct: 511 LSKDEQMQQRRANQ-----------RMGAEVMSQ---RIREMSDNDPRVVALVIRQWMGN 556 Query: 553 EIE 555 E E Sbjct: 557 EHE 559 >gi|194469863|ref|ZP_03075847.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|200390157|ref|ZP_03216768.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205358799|ref|ZP_02659200.2| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194456227|gb|EDX45066.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|199602602|gb|EDZ01148.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205331875|gb|EDZ18639.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 579 Score = 431 bits (1109), Expect = e-118, Method: Composition-based stats. Identities = 131/542 (24%), Positives = 233/542 (42%), Gaps = 52/542 (9%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 63 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 122 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 123 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 180 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + A+ HLV++AV L G+VT++D +G LLT Sbjct: 181 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 240 Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 +N R++ L ++ I+ I L+ +G N + V A+L+ ++ E Sbjct: 241 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 300 Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------------HVSDRKV 320 Y P+ ++ S+ SE P N P + + Sbjct: 301 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 360 Query: 321 PLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373 P + N++ + E SNYE++ T + +ERLS+AVVVN L + Sbjct: 361 PQTSTSTNSNSAGPRSTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP 420 Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433 + +I + A G + +RGDT+ + + F + ++ F S Sbjct: 421 L----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDDTGGELPFWQQQS 473 Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493 ++ A +L+ ++ L A+R ++ + + AV L Sbjct: 474 -FIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRL 531 Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ + +NQ R+ + V Q R+ M + + A ++R+W ++ Sbjct: 532 SKDEQLQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 577 Query: 554 IE 555 E Sbjct: 578 HE 579 >gi|197249147|ref|YP_002146054.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197212850|gb|ACH50247.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 579 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 131/542 (24%), Positives = 234/542 (43%), Gaps = 52/542 (9%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 63 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 122 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 123 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 180 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + A+ HLV++AV L G+VT++D +G LLT Sbjct: 181 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 240 Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 +N R++ L ++ I+ I L+ +G N + V A+L+ ++ E Sbjct: 241 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 300 Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------------HVSDRKV 320 Y P+ ++ S+ SE P N P + + Sbjct: 301 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 360 Query: 321 PLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373 P + N++ + E SNYE++ T + +ERLS+AVVVN L + Sbjct: 361 PQTSTSTNSNNAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP 420 Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433 + +I + A G + +RGDT+ + + F ++ ++ F S Sbjct: 421 L----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDNTGGELPFWQQQS 473 Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493 ++ A +L+ ++ L A+R ++ + + AV L Sbjct: 474 -FIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRL 531 Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ + +NQ R+ + V Q R+ M + + A ++R+W ++ Sbjct: 532 SKDEQLQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 577 Query: 554 IE 555 E Sbjct: 578 HE 579 >gi|194445262|ref|YP_002041234.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194736346|ref|YP_002115003.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197301177|ref|ZP_02664267.2| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204931028|ref|ZP_03221854.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|194403925|gb|ACF64147.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194711848|gb|ACF91069.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288091|gb|EDY27478.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204320072|gb|EDZ05277.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 579 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 131/542 (24%), Positives = 234/542 (43%), Gaps = 52/542 (9%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 63 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 122 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 123 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 180 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + A+ HLV++AV L G+VT++D +G LLT Sbjct: 181 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 240 Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 +N R++ L ++ I+ I L+ +G N + V A+L+ ++ E Sbjct: 241 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 300 Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------------HVSDRKV 320 Y P+ ++ S+ SE P N P + + Sbjct: 301 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 360 Query: 321 PLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373 P + N++ + E SNYE++ T + +ERLS+AVVVN L + Sbjct: 361 PQTSTSTNSNSAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP 420 Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433 + +I + A G + +RGDT+ + + F ++ ++ F S Sbjct: 421 L----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDNTGGELPFWQQQS 473 Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493 ++ A +L+ ++ L A+R ++ + + AV L Sbjct: 474 -FIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRL 531 Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ + +NQ R+ + V Q R+ M + + A ++R+W ++ Sbjct: 532 SKDEQLQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 577 Query: 554 IE 555 E Sbjct: 578 HE 579 >gi|197264219|ref|ZP_03164293.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197242474|gb|EDY25094.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 579 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 131/542 (24%), Positives = 233/542 (42%), Gaps = 52/542 (9%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 63 LWAKAPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 122 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 123 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 180 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + A+ HLV++AV L G+VT++D +G LLT Sbjct: 181 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 240 Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 +N R++ L ++ I+ I L+ +G N + V A+L+ ++ E Sbjct: 241 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 300 Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------------HVSDRKV 320 Y P+ ++ S+ SE P N P + + Sbjct: 301 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 360 Query: 321 PLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373 P + N++ + E SNYE++ T + +ERLS+AVVVN L + Sbjct: 361 PQTSTSTNSNSAGPRSTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP 420 Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433 + +I + A G + +RGDT+ + + F + ++ F S Sbjct: 421 L----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDDTGGELPFWQQQS 473 Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493 ++ A +L+ ++ L A+R ++ + + AV L Sbjct: 474 -FIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRL 531 Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ + +NQ R+ + V Q R+ M + + A ++R+W ++ Sbjct: 532 SKDEQLQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 577 Query: 554 IE 555 E Sbjct: 578 HE 579 >gi|194451642|ref|YP_002046020.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195873172|ref|ZP_02696421.2| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|205357978|ref|ZP_03223896.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205359405|ref|ZP_02669752.2| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194409946|gb|ACF70165.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195633848|gb|EDX52200.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|205328375|gb|EDZ15139.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205336392|gb|EDZ23156.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|323130248|gb|ADX17678.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 579 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 131/542 (24%), Positives = 234/542 (43%), Gaps = 52/542 (9%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 63 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 122 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 123 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 180 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + A+ HLV++AV L G+VT++D +G LLT Sbjct: 181 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 240 Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 +N R++ L ++ I+ I L+ +G N + V A+L+ ++ E Sbjct: 241 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 300 Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------------HVSDRKV 320 Y P+ ++ S+ SE P N P + + Sbjct: 301 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 360 Query: 321 PLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373 P + N++ + E SNYE++ T + +ERLS+AVVVN L + Sbjct: 361 PQTSTSTNSNSAGPRSTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP 420 Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433 + +I + A G + +RGDT+ + + F ++ ++ F S Sbjct: 421 L----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDNTGGELPFWQQQS 473 Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493 ++ A +L+ ++ L A+R ++ + + AV L Sbjct: 474 -FIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRL 531 Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ + +NQ R+ + V Q R+ M + + A ++R+W ++ Sbjct: 532 SKDEQLQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 577 Query: 554 IE 555 E Sbjct: 578 HE 579 >gi|76581502|gb|ABA50977.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1710b] Length = 627 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 132/525 (25%), Positives = 219/525 (41%), Gaps = 21/525 (4%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 110 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 169 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++SI+ + AARVH+ +P Sbjct: 170 LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 227 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ V + A+ +V+++VP++ +VT++D G LLT Sbjct: 228 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 287 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 288 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 347 Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH--------VSDRKVPLPRSLEN 328 P+ ++S S+ S S N P S+ + P + Sbjct: 348 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 407 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 +D+K+ +NYE++ ++RLS+AVVVN T+ GR Q LA++ Sbjct: 408 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQV 467 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G + +RGD++ + + F + D++ V Sbjct: 468 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 527 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 L ALRR P GL D L + Sbjct: 528 AALYFMFVRPALRRAFPPPAEPAA---AAVPALDGPDDMLALDGLPSPDKKQLAE-EDEE 583 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ N Y R + + + A +++ W E Sbjct: 584 HPALLAFENERNRYERNLDYAR--TIARQDPKIVATVVKNWVSDE 626 >gi|322655518|gb|EFY51826.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322683020|gb|EFY79036.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|323204454|gb|EFZ89460.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] Length = 531 Score = 430 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 129/555 (23%), Positives = 234/555 (42%), Gaps = 52/555 (9%) Query: 28 VILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPS 87 + + +A + +P Y L+ L D I L++ NI +R ++ +I VP+ Sbjct: 2 AGSATVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPA 61 Query: 88 SMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSIS 147 V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ Sbjct: 62 DKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLG 119 Query: 148 GIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMG 205 + +ARVH+ MP F + P+ASV + A+ HLV++AV L G Sbjct: 120 PVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPG 179 Query: 206 DVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVA 264 +VT++D +G LLT +N R++ L ++ I+ I L+ +G N + V A Sbjct: 180 NVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTA 239 Query: 265 ELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP-------- 313 +L+ ++ E Y P+ ++ S+ SE P N P Sbjct: 240 QLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPI 299 Query: 314 ------HVSDRKVPLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIA 360 + + P + N++ + E SNYE++ T + +ERLS+A Sbjct: 300 ATPPTNQQNAQNTPQTSTSTNSNSAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVA 359 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 VVVN L + + +I + A G + +RGDT+ + + F + Sbjct: 360 VVVNYKTLADGKPL----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVD 412 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 + ++ F S ++ A +L+ ++ L A+R + ++ + Sbjct: 413 NTGGELPFWQQQS-FIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRRVEETKAAQEQAQV 471 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 + ++D R R+ + V Q R+ M + + Sbjct: 472 R------------QETEEAVEVRLSKDEQLQQRRANQRLGAEVMSQ---RIREMSDNDPR 516 Query: 541 RFAKILRKWARSEIE 555 A ++R+W ++ E Sbjct: 517 VVALVIRQWMSNDHE 531 >gi|238755308|ref|ZP_04616651.1| Flagellar M-ring protein [Yersinia ruckeri ATCC 29473] gi|238706444|gb|EEP98818.1| Flagellar M-ring protein [Yersinia ruckeri ATCC 29473] Length = 574 Score = 430 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 141/550 (25%), Positives = 248/550 (45%), Gaps = 59/550 (10%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 + SP Y LY L D I L++ NI +R ++NG ++ +P+ V + R+ LA Sbjct: 47 MLWAKSPDYRVLYSNLSDRDGGAIVTQLTQLNIPYRFAENGGALLIPADKVHETRLRLAQ 106 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 QGLP + G+EL D+ FG++ F ++I RALEGE++RTI+++ ++ RVH+ MP Sbjct: 107 QGLPKGGA-VGFELLDQE-KFGISQFSEQINYQRALEGELSRTIETLGPVLNVRVHLAMP 164 Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + P+ASV + AI ++V+++V L G+VTV+D TG+LL Sbjct: 165 KPSLFVREQKSPSASVTLTLQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLL 224 Query: 218 TANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 T ++ R++ L ++ + I LA +G N + V A+++ T++ + Sbjct: 225 TQSDSAGRDLNAAQLKFTNEVEVRFQRRIESILAPMVGNGNVHAQVTAQVDFATREQTDE 284 Query: 277 VYDPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDRK-------------- 319 Y P+ + E+ S+ +SE + N P + Sbjct: 285 EYKPNQRPEQGAVRSQQLSQSEQVGGTPIGGVPGALSNQPSATPAAPIETPAAPGATGAA 344 Query: 320 ----------------VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 ++ + +++E +NYE++ T ++RLS+AVVV Sbjct: 345 ANTATATPATRNTSAGTAGKNAVPGSSRRDETTNYEVDRTIRHTQQQAGMVQRLSVAVVV 404 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 N + + G+ LA+I + A G +++RGDT+ + + F E + NS Sbjct: 405 NYLGIDKKSGKPI--ALSKDQLAQIEALTREAMGFSTQRGDTLNVVNTPFTEAEETNSA- 461 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 + F S F V+NA +L+ L+ L +R L AKK EV P Sbjct: 462 --LPFWKSQS-FFDQVLNAGRYLLILLVAWILWRKLVRPLM----AKKMEVN-------P 507 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 I++A T + SN D + + Q R+++ V Q R+ + + + A Sbjct: 508 VIAAAKTVAQTAEAAESAKQSN-DELAQRKKSQQRVSAEVQAQ---RIRELADKDPRVVA 563 Query: 544 KILRKWARSE 553 ++R+W ++ Sbjct: 564 LVIRQWMSND 573 >gi|300717231|ref|YP_003742034.1| flagellar basal-body M-ring protein [Erwinia billingiae Eb661] gi|299063067|emb|CAX60187.1| Flagellar basal-body M-ring protein [Erwinia billingiae Eb661] Length = 576 Score = 430 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 129/554 (23%), Positives = 228/554 (41%), Gaps = 59/554 (10%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 + P Y LY L D I L++ NI ++ D G ++ VP+ V + R+ LA Sbjct: 44 MALWAKQPEYRVLYNNLSDEDGGAIITQLTQMNIPYQFDDKGGALMVPAEKVHELRLRLA 103 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 QGLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + RVH+ M Sbjct: 104 QQGLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKNVRVHLAM 161 Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKL 216 P F + PTASV + + AI H+V+++V L G+VTV+D G L Sbjct: 162 PKPSLFVREQKSPTASVTLTLQPGRALDQGQISAIVHMVSSSVAGLPPGNVTVVDQAGHL 221 Query: 217 LT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LT ++ R++ L +++ + I L +G N + V A+++ + ++ + Sbjct: 222 LTQSDNAGRDLNDAQLKYATDVENRFQSRIEAILNPIVGTGNVHAQVTAQIDFNAREQTD 281 Query: 276 IVYDPDS----KVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRK------------ 319 Y P+S + RS + S Q P N P ++ Sbjct: 282 EKYQPNSDPSTQAVRSRQTSDSEQIGGQY-PGGVPGALSNQPAPANTAPVTTPAANNQNG 340 Query: 320 -------------------VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 ++ + + + +NYE++ + T + +++RLS+A Sbjct: 341 QNGQNGQNGNAAAANQGSSASTAKAGPSNTRTDNTTNYEVDRTILHTKMNVGEVQRLSVA 400 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 VVVN + D+ L +I + A G + +RGD++ + + F + + Sbjct: 401 VVVNY----KADAAGKPIALTDAQLKQIENLTREAMGYSDKRGDSLNVVNSPFTVTEDTS 456 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 + + LV +V +L L LRR ++ A Sbjct: 457 DDVPFWKQPAFIDQMMELGRWLLVLIVAWILYRKLVRPQLRRKAELEKAAVEAAAVAKQA 516 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 AV S ++D R Q R+++ V Q R+ M E + Sbjct: 517 REESGDDAVAV-----------SLSKDEQDQERKSQHRMSAEVMSQ---RIRDMSENDPR 562 Query: 541 RFAKILRKWARSEI 554 A ++R+W + E+ Sbjct: 563 VVALVIRQWMKDEL 576 >gi|167813742|ref|ZP_02445422.1| flagellar MS-ring protein [Burkholderia pseudomallei 91] Length = 559 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 132/525 (25%), Positives = 219/525 (41%), Gaps = 21/525 (4%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 42 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 101 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++SI+ + AARVH+ +P Sbjct: 102 LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 159 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ V + A+ +V+++VP++ +VT++D G LLT Sbjct: 160 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 219 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 220 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 279 Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH--------VSDRKVPLPRSLEN 328 P+ ++S S+ S S N P S+ + P + Sbjct: 280 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 339 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 +D+K+ +NYE++ ++RLS+AVVVN T+ GR Q LA++ Sbjct: 340 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQV 399 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G + +RGD++ + + F + D++ V Sbjct: 400 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 459 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 L ALRR P GL D L + Sbjct: 460 AALYFMFVRPALRRAFPPPAEPAA---AAVPALDGPDDMLALDGLPSPDKKQLAE-EDEE 515 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ N Y R + + + A +++ W E Sbjct: 516 HPALLAFENERNRYERNLDYAR--TIARQDPKIVATVVKNWVSDE 558 >gi|56384261|gb|AAV85779.1| FliF [Azospirillum brasilense] Length = 521 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 155/520 (29%), Positives = 262/520 (50%), Gaps = 12/520 (2%) Query: 43 VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL 102 +++P + LY +L+ ++ I+ L EA + F + G+ I V + VG R+ +AA GL Sbjct: 4 LSTPEMELLYAELQPTEAAAIAKKLEEAKVPFTVDKTGTKIMVAAEQVGPTRMRMAAAGL 63 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162 P S + GYELFDK FG TSFMQ I +RALEGE+ART+Q+++G+ +ARVH+V+P Sbjct: 64 P-SGGSIGYELFDKGEGFGATSFMQNINHLRALEGEMARTVQTLNGVQSARVHLVLPKRE 122 Query: 163 SFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL--- 217 F + TAS+ I+ ++ +AI+HL+AA+VPNLD ++++D G LL Sbjct: 123 LFARQQNPATASIFIKLRPGAQLSRENIQAIQHLIAASVPNLDPSRISIVDDKGTLLARG 182 Query: 218 TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 T N+ +L + A + + I L +G R+ V A+L+ D + + Sbjct: 183 TGNDSADAMLASAEEKKVAYESRVARIIEDLLGRTVGYGKVRAEVSADLDFDRITTQSEI 242 Query: 278 YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSN 337 +DP+S+V RS + +A S P S VTV+QN+P P S ++ EE N Sbjct: 243 FDPESQVVRSTQTVTEANESHDRDPLSPVTVDQNLPTAQSGNNAGPISQNKQNRSEETIN 302 Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS-ADQGKIDSYLAEINKIVSAAT 396 YEI+ + ++ ++ RLS+AV+V+ G A Q + + L I +V +A Sbjct: 303 YEISRTTKNHVRESGQVRRLSVAVLVDGTYSLPRDGNPAAYQPRPEQELESIKALVRSAV 362 Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456 G+++ RGDT+ + +M F + ++ F+ + + +V + +L+ L Sbjct: 363 GLDAVRGDTLEVINMRFWSPEDDVQKPEEL-FLGMTKDDLFRIAEMVVLGIVAVLIILLV 421 Query: 457 LHAL--RRLHNIDDAKKGEVGG-KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR 513 + L R D ++ ++ + S P + A TG + D +AL+++ D Sbjct: 422 IRPLITRAFEKADQQEEDDMDRLLADQSGMPAALAAPTGALAQD-LALEAAQADEELEQM 480 Query: 514 NLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 +R+ V S ++ ++E + E ILR W E Sbjct: 481 IDINRVEGRVRASSLRKVGEIVEKHPEEAVSILRNWLYQE 520 >gi|312962276|ref|ZP_07776768.1| flagellar M-ring protein FliF [Pseudomonas fluorescens WH6] gi|311283613|gb|EFQ62202.1| flagellar M-ring protein FliF [Pseudomonas fluorescens WH6] Length = 592 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 130/592 (21%), Positives = 242/592 (40%), Gaps = 66/592 (11%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y LY L D +I L Sbjct: 22 LSFLENLSEMTMLRQVGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMETL 81 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + A+I + + N ++ V + V +AR+ LAA G+ S SN G+E+ DK G + FM+ Sbjct: 82 AAADIAYTVEPNSGALLVKADDVARARMKLAAAGVTPSDSNIGFEILDKDQGLGTSQFME 141 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 R LEGE+ARTI S++ + ARVH+ +P F + +P+ASV++ + + Sbjct: 142 ATRYRRGLEGELARTISSLNNVKGARVHLAIPKSSVFVRDERKPSASVLVELFSGRSLEP 201 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEM 243 AI +LVA +VP L +TV+D G LL+ A GK + ++ + Sbjct: 202 GQVMAIINLVATSVPELSKSQITVVDQKGNLLSDMAENSALTQAGKQFDYSRRMESMLTQ 261 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 ++ L LG D +++ V A+++ + ++PD RS + + + QR+ ++ P+ Sbjct: 262 RVHNILQPILGNDRYKAEVSADVDFSAVESTSEQFNPDQPALRSEQSTSE-QRTASNGPQ 320 Query: 304 SAVTVEQNMPHVSDRKV----------------------------------PLPRSLENT 329 N P P+ Sbjct: 321 GVPGALSNQPPSPASAPQTTGGAAATAGAIQPGQPLLDANGQQIMDPATGQPMLAPYPAD 380 Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL-TEVLGRSADQGKIDSYLAEI 388 + + N+E++ T ++ RLS++VVV+ G LA Sbjct: 381 KRNQSTKNFELDRSISHTKQQQGRVNRLSVSVVVDDQVKVNPADGAVTRAPWSADELARF 440 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALV 444 ++V A G ++ RGD++++ +M F + Q F DI+ + Sbjct: 441 TRLVQDAVGFDASRGDSVSVINMPFSAERGETIAEPAFYSQPWFWDIVKQ---------- 490 Query: 445 FLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDS 503 ++G L + L LR L+NI K ++ G + ND ++L Sbjct: 491 -VLGVLFILVLVFGVLRPVLNNITGNGKKQLAAFGGGDVELGGMGGLDGELANDRVSLGG 549 Query: 504 SNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + S S +++N+ + ++ + R A+++++W ++ Sbjct: 550 PQSILLPSPSEGYDAQLNA---------IKSLVAEDPGRVAQVVKEWINADE 592 >gi|167843852|ref|ZP_02469360.1| flagellar MS-ring protein [Burkholderia pseudomallei B7210] Length = 565 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 132/525 (25%), Positives = 219/525 (41%), Gaps = 21/525 (4%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 48 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 107 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++SI+ + AARVH+ +P Sbjct: 108 LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 165 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ V + A+ +V+++VP++ +VT++D G LLT Sbjct: 166 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 225 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 226 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 285 Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH--------VSDRKVPLPRSLEN 328 P+ ++S S+ S S N P S+ + P + Sbjct: 286 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 345 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 +D+K+ +NYE++ ++RLS+AVVVN T+ GR Q LA++ Sbjct: 346 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQV 405 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G + +RGD++ + + F + D++ V Sbjct: 406 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 465 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 L ALRR P GL D L + Sbjct: 466 AALYFMFVRPALRRAFPPPAEPAA---AAVPALDGPDDMLALDGLPSPDKKQLAE-EDEE 521 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ N Y R + + + A +++ W E Sbjct: 522 HPALLAFENERNRYERNLDYAR--TIARQDPKIVATVVKNWVSDE 564 >gi|90418370|ref|ZP_01226282.1| putative flagellar M-ring protein [Aurantimonas manganoxydans SI85-9A1] gi|90338042|gb|EAS51693.1| putative flagellar M-ring protein [Aurantimonas manganoxydans SI85-9A1] Length = 563 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 205/558 (36%), Positives = 320/558 (57%), Gaps = 7/558 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 +A+ + Q + T+LG R+ L V L+ + L ++++ P + LY L+ +DV Sbjct: 3 LAVGGKAQQLLTNLTALGPRRLGALGLVGLLVVALVGLGSYYLSRPDMETLYSGLDRTDV 62 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 RI AL+EA I F + G +I P S AR+ LA +GLP S N+GYELFD + S Sbjct: 63 TRIGAALTEAGIPFDVDSKGDAILTPFSQTAPARMLLAEKGLPR-SENAGYELFDNLGSI 121 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQEITRVRALEGEIARTIQ++ + AARVHIV+PD GSFR+ +P+ASV++R Sbjct: 122 GLTSFMQEITRVRALEGEIARTIQTLRNVRAARVHIVLPDKGSFRREQQKPSASVVVRTE 181 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL-SIVQAIQH 239 N + + SA+AIR LVA+A+P++ +VT+L++ G LL + + + L I + Sbjct: 182 NGNDFGSAQAIRSLVASAIPSMTPEEVTILNADGTLLASGDEGVSAAPTKLFGIESVVSK 241 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 +IE +I + LA +LG+ NF+++VVA L+ D +QI E ++DP+S+VERS R ++ +S Sbjct: 242 DIEQSIRRTLAPYLGIGNFQTSVVARLDTDRKQISERIFDPESRVERSTRTIRENNQSAN 301 Query: 300 SQPESAVTVEQNMPHVSDRKVPL---PRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 E+ V VEQ++ V +S E T+++EE +NYEIN K+I+TT D Y++ER Sbjct: 302 RASETPVGVEQDVREVDAAPAGGGGGEQSSEETERREELTNYEINEKTISTTSDGYQVER 361 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 LS+AVVV++ R+ E +G + +ID+ + EI +V++A+G ++ RGD I +T++DF+ + Sbjct: 362 LSVAVVVDRKRVLEAIGENPTDAQIDARIGEIKALVASASGFSADRGDQIEVTAVDFIAS 421 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476 S ++ R T+INAL L +++ + GL R A +G Sbjct: 422 DDALEPIPAPSLGEMFMRQSGTLINALTILAVAIMLIWFGLKPAVRAIAAMPAAEGTTLA 481 Query: 477 KSILSPPPISSAVTTGLMPN--DNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 P L + +N+ DS + +N V RL + Sbjct: 482 ALDDDEMPELDDDARALSESLLENLNYDSDPAGGSGNEIGFLDDLNFNVGNSPRARLERL 541 Query: 535 IEINEERFAKILRKWARS 552 ++ NEE A ++++W Sbjct: 542 LDHNEEHAATVMKQWLNQ 559 >gi|227355980|ref|ZP_03840372.1| flagellar M-ring protein [Proteus mirabilis ATCC 29906] gi|227163968|gb|EEI48870.1| flagellar M-ring protein [Proteus mirabilis ATCC 29906] Length = 573 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 129/548 (23%), Positives = 243/548 (44%), Gaps = 56/548 (10%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++ SP Y LY L D I L++ N+ +R+S NGS+I VP + V + R+ LA Sbjct: 46 LWLQSPDYKVLYSNLSDKDGGEIVTQLTQMNVPYRLSQNGSAIMVPDNQVHELRLKLAQA 105 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + +G+EL DK FG++ F ++I RALEGE+ARTI+++ + ARVH+ +P Sbjct: 106 GLPKGGA-AGFELLDKE-KFGISQFSEQINYQRALEGELARTIETLGPVQNARVHLALPK 163 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + + AI H+VA++V + +VT++D +GKLLT Sbjct: 164 PSLFVREQKSPSASVTVGLLQGRALDEGQINAIVHIVASSVAGMPDSNVTIVDQSGKLLT 223 Query: 219 ANEM-ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 + R++ L VQ ++ + I L +G N + V A+++ + Sbjct: 224 QPDALGRDLNSIQLKYVQELESRYQQRIETLLGPIVGRGNVHAQVTAQVDFSHTEETAEE 283 Query: 278 YDPDSKVERSIRLSKDAQRSETSQP---ESAVTVEQNMPHVSDRKV-------------- 320 Y P+ ++ SK +SE + N P + Sbjct: 284 YKPNQPPNQAAVRSKQVSQSEQNGGMLAGGVPGALSNQPVAPPQAPIEKAKDTAADEKAT 343 Query: 321 ------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTE---- 370 + R+ + + +E +NYE++ + +ERLS+AV+VN + + Sbjct: 344 STNANRSMTRNPNSNSRLDETTNYEVDRRIRHVKRPVGNIERLSVAVIVNYKTVEDKKKA 403 Query: 371 -----VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425 + + D L +I +V A G + RGD++++ + F + + + Sbjct: 404 TEGEEPIVENKQVPLTDEQLQQIESLVREAMGYSQERGDSLSVVNSQFNDTE---EPVIS 460 Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485 V + + A ++ +L+ ++ L ++ ++ ++ EV + + Sbjct: 461 VPMWEN-PQILAKALDLGRWLLLVIIAWILWRKLVKP--QLEKRREAEVAAQKAI----- 512 Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545 + T L D++ + + D S + + R+++ + Q R+ M E + A + Sbjct: 513 ---LKTKLEVTDDV--NEAELDEESRRKQARQRVSAELQSQ---RIREMAEKDPRVVAMV 564 Query: 546 LRKWARSE 553 +R+W E Sbjct: 565 IRQWMSKE 572 >gi|197285489|ref|YP_002151361.1| flagellar MS-ring protein [Proteus mirabilis HI4320] gi|194682976|emb|CAR43401.1| flagellar M-ring protein [Proteus mirabilis HI4320] Length = 573 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 129/548 (23%), Positives = 243/548 (44%), Gaps = 56/548 (10%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++ SP Y LY L D I L++ N+ +R+S NGS+I VP + V + R+ LA Sbjct: 46 LWLQSPDYKVLYSNLSDKDGGEIVTQLTQMNVPYRLSQNGSAIMVPDNQVHELRLKLAQA 105 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + +G+EL DK FG++ F ++I RALEGE+ARTI+++ + ARVH+ +P Sbjct: 106 GLPKGGA-AGFELLDKE-KFGISQFSEQINYQRALEGELARTIETLGPVQNARVHLALPK 163 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + + AI H+VA++V + +VT++D +GKLLT Sbjct: 164 PSLFVREQKSPSASVTVGLLQGRALDEGQINAIVHIVASSVAGMPDSNVTIVDQSGKLLT 223 Query: 219 ANEM-ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 + R++ L VQ ++ + I L +G N + V A+++ + Sbjct: 224 QPDALGRDLNSIQLKYVQELESRYQQRIETLLGPIVGRGNVHAQVTAQVDFSHTEETAEE 283 Query: 278 YDPDSKVERSIRLSKDAQRSETSQP---ESAVTVEQNMPHVSDRKV-------------- 320 Y P+ ++ SK +SE + N P + Sbjct: 284 YKPNQPPNQAAVRSKQVSQSEQNGGMLAGGVPGALSNQPVAPPQAPIEKAKDTTADEKTT 343 Query: 321 ------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTE---- 370 + R+ + + +E +NYE++ + +ERLS+AV+VN + + Sbjct: 344 STNANRSMTRNPNSNSRLDETTNYEVDRRIRHVKRPVGNIERLSVAVIVNYKTVEDKKKA 403 Query: 371 -----VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425 + + D L +I +V A G + RGD++++ + F + + + Sbjct: 404 TEGEEPIVENKQVPLTDEQLQQIESLVREAMGYSQERGDSLSVVNSQFNDTE---EPVIS 460 Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485 V + + A ++ +L+ ++ L ++ ++ ++ EV + + Sbjct: 461 VPVWEN-PQILAKALDLGRWLLLVIIAWILWRKLVKP--QLEKRREAEVAAQKAI----- 512 Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545 + T L D++ + + D S + + R+++ + Q R+ M E + A + Sbjct: 513 ---LKTKLEVTDDV--NEAELDEESRRKQARQRVSAELQSQ---RIREMAEKDPRVVAMV 564 Query: 546 LRKWARSE 553 +R+W E Sbjct: 565 IRQWMSKE 572 >gi|83591884|ref|YP_425636.1| flagellar MS-ring protein [Rhodospirillum rubrum ATCC 11170] gi|83574798|gb|ABC21349.1| Flagellar FliF M-ring protein [Rhodospirillum rubrum ATCC 11170] Length = 551 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 148/553 (26%), Positives = 256/553 (46%), Gaps = 13/553 (2%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 F ++ +LG R+ LA V + I + ++ + LY L +D +I L Sbjct: 3 SFVQTMRNLGPVRLAALAGVAIALIGFVIYVASRLSGTSMELLYGDLAPADAKQIIAQLE 62 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 E NI ++++++G S+ VPS V K R+ +A LP S + GYE+FD ++ G T F Q Sbjct: 63 ERNIPYQMANDGRSVLVPSDQVLKLRVQMAESALP-SGATVGYEIFDSASALGSTQFTQN 121 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY-KS 187 I VRALEGE+ART+++I G+ ARVH+V+P F + P+ASV++ + + Sbjct: 122 INMVRALEGELARTVRTIQGVEGARVHLVLPKREPFTRDQVAPSASVVLLMKGRRLQPEQ 181 Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEMNI 245 A+++LVAAAVP + G V+++D G LLT E + +A + + +I Sbjct: 182 VVAVQNLVAAAVPGMKPGQVSIIDERGTLLTRGMGEEGALIAQNQDELRKAEERRLAQSI 241 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305 + L +GV R+ VVA+++ + +DP+ +V RS + +S S S Sbjct: 242 EQLLERTIGVGKVRAEVVADMDFNRIVTSRESFDPNGQVVRSTTTVDEQNKS--SDAVSN 299 Query: 306 VTVEQNMPHVS-DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 V+V+QN+P P S + ++ EE NYEI + ++RLS+AV+V+ Sbjct: 300 VSVQQNLPEAQFAGNGGAPTSQTSENRTEETVNYEITKIVTNEVKEAGVVKRLSVAVMVD 359 Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424 T G + Q + D + +I +V +A G + RGD I + +M F++ Sbjct: 360 GTSTTNDAGVTTWQPRSDDEMQKITSLVRSAMGYDQARGDQIEVVNMQFIDPGALFDDAA 419 Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP- 483 F+ + L V +L+ L + L + + + GG +L+ Sbjct: 420 AWEFLGFTKAEVMKMAEGLGVAVVAILIILLVVRPLVQRAFENLPSGADQGGAGLLTAEM 479 Query: 484 ---PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 P + G +P + + D + ++ V S ++ +++ + E Sbjct: 480 QSHPQLTGPGGGSIPAGMLGMPDEMDD--AEELIDIDKVEGRVKASSLRKIGEIVDKHPE 537 Query: 541 RFAKILRKWARSE 553 I+R W E Sbjct: 538 EALSIIRNWLYQE 550 >gi|2832233|gb|AAC01568.1| M-ring [Brucella abortus] Length = 540 Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 202/512 (39%), Positives = 303/512 (59%), Gaps = 6/512 (1%) Query: 4 LDQLLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 QL++ K LG +++ L V + + ++ P Y+ LYV L DVNR Sbjct: 10 FQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVNR 69 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + +AL EA I F + GSSI VP AR++LA +GLP+S+ N+GYELFD + S GL Sbjct: 70 MGLALGEAGIPFDVKSYGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGL 128 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 TSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 129 TSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGG 188 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEI 241 +SA++IR LVAAAVP+LD VTVLD+ G LL +A E + S+ Q + + Sbjct: 189 FSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASHV 248 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S ++ Sbjct: 249 DDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNNR 308 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 ++A VEQN+P + S E TD++EE +NYE+N+K+++T D Y ++RLSIAV Sbjct: 309 NDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIAV 368 Query: 362 VVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 V+++ RL + G + +D + +I +V+ A G+N+ RGD I +T+++FL+ + Sbjct: 369 VIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGAD 428 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA--KKGEVGGKS 478 V + D L R + NAL L L+ + GL L R N+ A + Sbjct: 429 MEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAGE 488 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFS 510 + +P I A + G I ++ D Sbjct: 489 VATPNFIGGAESVGEGVQAVIGGPAAYADQMK 520 >gi|292492381|ref|YP_003527820.1| flagellar M-ring protein FliF [Nitrosococcus halophilus Nc4] gi|291580976|gb|ADE15433.1| flagellar M-ring protein FliF [Nitrosococcus halophilus Nc4] Length = 566 Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 136/559 (24%), Positives = 249/559 (44%), Gaps = 42/559 (7%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 + L + + L +I V + L + + SP+Y LY + + I AL +ANI Sbjct: 31 NIARLSPLKQVGLLLMIAVSVALGVGIFLWSQSPNYQILYGAVSGKEKGEIVEALQKANI 90 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 D+++ + ++ VP+S V + R+ LA +GLP S+ +G+EL ++ FG++ F+++ Sbjct: 91 DYQLDEATGALMVPASQVHEVRLQLAMEGLPRSAG-TGFELLEQNPGFGVSEFLEKARYQ 149 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEA 190 R LEGE+ARTI +++ + +ARVH+ +P F + P+ASV++ + A Sbjct: 150 RVLEGELARTISTLNNVKSARVHLALPKRSVFIRDRKVPSASVVLDLYPGRMLAPGQVAA 209 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEMNINKA 248 I HLVA+++P L+ VTV++ G LLT E + + + I+ E I + Sbjct: 210 ITHLVASSIPELESAGVTVVNQEGDLLTQPERSQTLEMTASQFEYTRRIEEEYGHRIQRI 269 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308 LA +G D R+ VVAE++ + + Y+P+ + RS + +++ + P Sbjct: 270 LAPLVGADKVRAQVVAEVDFTVTEQTQERYEPEKRALRSEQTAEEERIG-GRLPGGIPGA 328 Query: 309 EQNMPH----------VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 N P ++ P ++ NYE++ + RLS Sbjct: 329 LSNQPPDEAQVPETLNGANEGESQPSEPPSSRSLRATRNYELDRTISHIRLAPGDIRRLS 388 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 +AV+V++ +T+ G + + L I +V A G N RGDTI + + F+ N+ Sbjct: 389 VAVLVDEKLVTDAEGNVSTSPRSPQELEHITGLVKEAVGFNPDRGDTINVINAPFVPNEE 448 Query: 419 FNSGTV----QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 Q + + + ++ L L+G L TF RRL + + Sbjct: 449 LEPLPEPPFWQQEWFWVAVKQGGGILAVLFLLLGVLRPTF------RRLTTVPEP----- 497 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 ++ S P S GL + ++ S +L++ + R+ M Sbjct: 498 --VTVPSLPKGSDEDKEGLKEDRLTLSSNAPTLQLSGPDSLEANLE---------RVRKM 546 Query: 535 IEINEERFAKILRKWARSE 553 + ER A++++ W + Sbjct: 547 AADDSERVAQVVKNWVSGD 565 >gi|311279120|ref|YP_003941351.1| flagellar M-ring protein FliF [Enterobacter cloacae SCF1] gi|308748315|gb|ADO48067.1| flagellar M-ring protein FliF [Enterobacter cloacae SCF1] Length = 556 Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 133/537 (24%), Positives = 233/537 (43%), Gaps = 48/537 (8%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + SP Y L+ L D I L + NI +R +D+G +I VP+ V + R+ LA QG Sbjct: 45 WAKSPDYRTLFSNLSDQDGGAIVTQLQQMNIPYRFADSGGAIEVPADKVHELRLRLAQQG 104 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + ARVH+ MP Sbjct: 105 LPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKGARVHLAMPKP 162 Query: 162 GSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV + A+ HLV++AV L G+VT++D G LLT Sbjct: 163 SLFVREQKLPSASVTLNLEPGRALDEGQIAAVVHLVSSAVAGLPPGNVTLVDQAGHLLTQ 222 Query: 220 NEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 + R++ L ++ I+ I L+ +G N + V A+LN D ++ E Y Sbjct: 223 SNTGARDLNDAQLKYASDVEGRIQRRIETILSPIVGNGNVHAQVTAQLNFDNKEQTEEQY 282 Query: 279 DPDSKVERSIRLSKDAQRSE--------------TSQPESAVTVEQNMPHVSDRKVPLP- 323 P+ +++ S+ SE ++ P A + P + Sbjct: 283 RPNGDSSQAVLRSRQVNESEQIGSPYPGGVPGALSNSPAPAPNAPISTPPANQNNGQQQT 342 Query: 324 -----RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ 378 S + E SNYE++ T + ++RLS+AVVVN L + Sbjct: 343 TSTTNASGPRNTSRNETSNYEVDRTIRHTKTNIGDVQRLSVAVVVNYKNLPDGKPL---- 398 Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFAT 438 + +I + A G + +RGDT+ + + F + ++ F S Sbjct: 399 PLTADQMKQIEDLTREAMGYSDKRGDTLNVVNSQF---SAGDETGGELPFWKQQS-FIDQ 454 Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498 +++A +L+ ++ L A+R ++ +V + ++ AV L ++ Sbjct: 455 LMSAGRWLLVLIVAWLLWRKAIRPQLARRQ-EEAKVAQEEARVQREMADAVEVRLSKDEQ 513 Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 R R+++ V Q R+ M + + A ++R+W ++ E Sbjct: 514 -----------HQQRRTNQRLSAEVMSQ---RIREMSDNDPRVVALVIRQWMSNDHE 556 >gi|205360218|ref|ZP_02681717.2| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205350665|gb|EDZ37296.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 579 Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 131/542 (24%), Positives = 235/542 (43%), Gaps = 52/542 (9%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 63 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 122 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 123 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 180 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + A+ HLV++AV +L G+VT++D +G LLT Sbjct: 181 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVASLPPGNVTLVDQSGHLLT 240 Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 +N R++ L ++ I+ I L+ +G N + V A+L+ ++ E Sbjct: 241 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 300 Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------------HVSDRKV 320 Y P+ ++ S+ SE P N P + + Sbjct: 301 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 360 Query: 321 PLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373 P + N++ + E SNYE++ T + +ERLS+AVVVN L + Sbjct: 361 PQTSTSTNSNSAGPRSTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP 420 Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433 + +I + A G + +RGDT+ + + F ++ ++ F S Sbjct: 421 L----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDNTGGELPFWQQQS 473 Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493 ++ A +L+ ++ L A+R ++ + + AV L Sbjct: 474 -FIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRL 531 Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ + +NQ R+ + V Q R+ M + + A ++R+W ++ Sbjct: 532 SKDEQLQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 577 Query: 554 IE 555 E Sbjct: 578 HE 579 >gi|56413118|ref|YP_150193.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362044|ref|YP_002141681.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127375|gb|AAV76881.1| flagellar basal-body M-ring protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093521|emb|CAR58982.1| flagellar basal-body M-ring protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 563 Score = 428 bits (1101), Expect = e-117, Method: Composition-based stats. Identities = 131/542 (24%), Positives = 233/542 (42%), Gaps = 52/542 (9%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 47 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 106 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 107 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 164 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + A+ HLV++AV L G+VT++D +G LLT Sbjct: 165 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 224 Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 +N R++ L ++ I+ I L+ +G N + V A+L+ ++ E Sbjct: 225 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 284 Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------------HVSDRKV 320 Y P+ ++ S+ SE P N P + + Sbjct: 285 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 344 Query: 321 PLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373 P + N++ + E SNYE++ T + +ERLS+AVVVN L + Sbjct: 345 PQTSTSTNSNNAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP 404 Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433 + +I + A G + +RGDT+ + + F + ++ F S Sbjct: 405 L----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDDTGGELPFWQQQS 457 Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493 ++ A +L+ ++ L A+R ++ + + AV L Sbjct: 458 -FIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRL 515 Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ + +NQ R+ + V Q R+ M + + A ++R+W ++ Sbjct: 516 SKDEQLQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 561 Query: 554 IE 555 E Sbjct: 562 HE 563 >gi|330961220|gb|EGH61480.1| flagellar MS-ring protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 596 Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 129/593 (21%), Positives = 240/593 (40%), Gaps = 66/593 (11%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y LY L D +I L Sbjct: 24 LSFLENLSEMTMLRQVGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGLDSKQIMDTL 83 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + ANI + + N ++ V S V +ARI LA G+ + +N G+E+ DK G + FM+ Sbjct: 84 TAANIVYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 R LEGE+ARTI +++ + ARVH+ +P F + +P+ASV++ + Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEM 243 AI +LVA +VP L +TV+D G LL+ A E + GK + ++ + Sbjct: 204 SQVLAIINLVATSVPELSKSQITVVDQKGTLLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA--------- 294 + L LG D +++ V A ++ + ++PD RS + + Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNEQRSSSSSSGG 323 Query: 295 -QRSETSQPESAVTVEQ----------------------NMPHVSDRKVPLPRSL--ENT 329 + ++QP T Q N + D P Sbjct: 324 VPGALSNQPPGPATAPQTAGGGAAGAAGPIAAGQPLLDANGQQIMDPATGQPALAPFPAD 383 Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK-GRLTEVLGRSADQGKIDSYLAEI 388 + + N+E++ T +L RLS+AVVV+ + G + + LA Sbjct: 384 KRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEISRAPWSATDLARF 443 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALV 444 ++V A G ++ RGD++++ ++ F + Q F DI+ + Sbjct: 444 TRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYSQPWFWDIVKQ---------- 493 Query: 445 FLVGTLLVTFLGLHALRRLHN--IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALD 502 VG + + L LR + N + K ++ G + ND ++L Sbjct: 494 -AVGVIFILILVFGVLRPVLNNITNGKSKQQLAAFGGGDAELGGMGGLDGELSNDRVSLG 552 Query: 503 SSNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + S + +++N+ + ++ + R A+++++W ++ Sbjct: 553 GPQSILLPSPTEGYDAQLNA---------IKSLVAEDPGRVAQVVKEWINTDE 596 >gi|320085412|emb|CBY95193.1| Flagellar M-ring protein [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 560 Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 131/542 (24%), Positives = 233/542 (42%), Gaps = 52/542 (9%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 44 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 103 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 104 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 161 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + A+ HLV++AV L G+VT++D +G LLT Sbjct: 162 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 221 Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 +N R++ L ++ I+ I L+ +G N + V A+L+ ++ E Sbjct: 222 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 281 Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------------HVSDRKV 320 Y P+ ++ S+ SE P N P + + Sbjct: 282 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 341 Query: 321 PLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373 P + N++ + E SNYE++ T + +ERLS+AVVVN L + Sbjct: 342 PQTSTSNNSNNAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP 401 Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433 + +I + A G + +RGDT+ + + F + ++ F S Sbjct: 402 L----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDDTGGELPFWQQQS 454 Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493 ++ A +L+ ++ L A+R ++ + + AV L Sbjct: 455 -FIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRL 512 Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ + +NQ R+ + V Q R+ M + + A ++R+W ++ Sbjct: 513 SKDEQLQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 558 Query: 554 IE 555 E Sbjct: 559 HE 560 >gi|167909065|ref|ZP_02496156.1| flagellar MS-ring protein [Burkholderia pseudomallei 112] Length = 573 Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 132/525 (25%), Positives = 219/525 (41%), Gaps = 21/525 (4%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 56 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 115 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++SI+ + AARVH+ +P Sbjct: 116 LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 173 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ V + A+ +V+++VP++ +VT++D G LLT Sbjct: 174 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 233 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 234 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 293 Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH--------VSDRKVPLPRSLEN 328 P+ ++S S+ S S N P S+ + P + Sbjct: 294 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 353 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 +D+K+ +NYE++ ++RLS+AVVVN T+ GR Q LA++ Sbjct: 354 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQV 413 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G + +RGD++ + + F + D++ V Sbjct: 414 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 473 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 L ALRR P GL D L + Sbjct: 474 AALYFMFVRPALRRAFPPPAEPAA---AAVPALDGPDDMLALDGLPSPDKKQLAE-EDEE 529 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ N Y R + + + A +++ W E Sbjct: 530 HPALLAFENERNRYERNLDYAR--TIARQDPKIVATVVKNWVSDE 572 >gi|224826633|ref|ZP_03699734.1| flagellar M-ring protein FliF [Lutiella nitroferrum 2002] gi|224601234|gb|EEG07416.1| flagellar M-ring protein FliF [Lutiella nitroferrum 2002] Length = 576 Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 133/573 (23%), Positives = 241/573 (42%), Gaps = 35/573 (6%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 ++ + +L + ++L + + + + +P Y L+ L D +I+ Sbjct: 15 RVNEASDRFKALPNNKKILLFAALAAVFSVIVGLLILNRTPDYKVLFANLADRDGGQITA 74 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 AL + N+ ++I G ISVPS V R+ LAAQGLP + G+EL D FG++ F Sbjct: 75 ALQQMNVPYQI-GGGGVISVPSDKVYDVRLKLAAQGLPKAGG-VGFELMD-NQKFGISQF 131 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 +++ RA+EGE+ARTI++I + +ARVHI +P F + +PTASVM+ V Sbjct: 132 AEQVNYQRAIEGELARTIEAIGAVESARVHIAIPKQSVFVRDQQQPTASVMLNLYPGRVL 191 Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQAIQHE 240 I HLV+++VPNL +VTV+D G LL++ N G + L V I+ + Sbjct: 192 DGGQISGILHLVSSSVPNLSARNVTVVDQDGNLLSSQSDVNNAAGLDQRQLGYVHQIESD 251 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQRS 297 I L G N R+ V A ++ + + P+S S S+ + S Sbjct: 252 FVKRIEGILEPIFGKGNVRAQVTANVDFSEVEQTSETFRPNSTPNPSATRSQQIVEKLGS 311 Query: 298 ETSQPESAVTVEQNMPHVSDRKV---------------PLPRSLENTDKKEEQSNYEINT 342 ++ P N P + P +++ +NYE++ Sbjct: 312 GSNLPGGVPGALSNQPPSAASAPLTLPPGAAPGTATLSGQPLGQNGALERQLITNYEVDK 371 Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402 T L+RLS AVVVN + + G + +IN +V G N+ R Sbjct: 372 TIQHTKLPKGVLKRLSAAVVVNYRLMPDRNGEVKPTPLTAQEIQQINNLVRETMGYNTER 431 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 GDT+ + + F N ++Q +D +S + ++ ++ + L + F + + R Sbjct: 432 GDTLNVVNAAFAGNA--PPASLQEKVVDYVSSNATDLVKYVLLAIAVLYLLFGVVRPIVR 489 Query: 463 -LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521 + KG+ G + + + A ++ + +++ Sbjct: 490 DVLKPAKGDKGQPGAAGEEAGGVPGRLLAVAREEGEAGAAAVEEANLDPRELQRRQYMSN 549 Query: 522 YVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + +++ + A+I+++W S+ Sbjct: 550 LEAA------RELVKADPRMAAQIIKEWISSDE 576 >gi|327394264|dbj|BAK11686.1| flagellar M-ring protein FliF [Pantoea ananatis AJ13355] Length = 572 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 133/548 (24%), Positives = 234/548 (42%), Gaps = 56/548 (10%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P+Y L+ L D I L++ N+ +R +DNG ++ VP V + R+ LA Q Sbjct: 47 LWAKTPNYSVLFSNLSNEDGGAIVTQLTQMNVPYRFADNGGALMVPEDKVHELRLRLAEQ 106 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP N G+EL DK FG++ F +++ RALEGE+ARTI+S+ + ARVH+ MP Sbjct: 107 GLPKGG-NVGFELLDKE-KFGISQFSEQVNYQRALEGELARTIESLGPVKTARVHLAMPK 164 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + +AI H+V+++V L G+VTV+D +G LLT Sbjct: 165 PTLFVREQKAPSASVTLTLQPGRALDEGQIQAITHMVSSSVAGLPPGNVTVVDQSGHLLT 224 Query: 219 ANEM-ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 ++ R++ L ++ + I L LG N + V A++N DT + + Sbjct: 225 RSDAVGRDLNDAQLKYAAEVEARYQQRIEAILNPILGQGNVHAQVTAQINFDTSEQTDEK 284 Query: 278 YDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVSDRK--------------- 319 Y P+ + + S+ SE S P N P ++ Sbjct: 285 YQPNGDPKNASIRSQQTSTSEQSGSPYPGGVPGALSNQPAPANTAPVNAPNTNAANGQNA 344 Query: 320 -------------VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 S+ ++++ NYE++ T + ++RLS+AVVVN Sbjct: 345 NGQNNAANGQRTSTASASSVPTNSRRDDTVNYELDRTIRHTKMNVGDVQRLSVAVVVNYR 404 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 + + + + L +I + A G + +RGD++ + + F + ++ Sbjct: 405 EDDKGKALALN----EQQLKQIEDLTREAMGYSQQRGDSVNVVNSQFNTTE---PTVSEL 457 Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486 F S F +I+A +L+ L+ L +R + K + Sbjct: 458 PFWQQQS-FFDQLISAGKWLLVALVAFILYRKTVRPHV---------LRKKEAEKAAAEA 507 Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546 A + ++D R +R+++ V Q R+ M E + A ++ Sbjct: 508 MAARAAQQNDQEAYSVQLSKDEMEQERKTNNRMSAEVMSQ---RIRDMSENDPRVVALVI 564 Query: 547 RKWARSEI 554 R+W +E+ Sbjct: 565 REWMGNEL 572 >gi|207856518|ref|YP_002243169.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206708321|emb|CAR32624.1| flagellar basal-body M-ring protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 560 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 130/542 (23%), Positives = 233/542 (42%), Gaps = 52/542 (9%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 44 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 103 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 104 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 161 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + A+ HLV++AV L G+VT++D +G LLT Sbjct: 162 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 221 Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 +N R++ L ++ I+ I L+ +G N + V A+L+ ++ E Sbjct: 222 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 281 Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------------HVSDRKV 320 Y P+ ++ S+ SE P N P + + Sbjct: 282 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 341 Query: 321 PLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373 P + N++ + E SNYE++ T + +ERLS+AVVVN L + Sbjct: 342 PQTSTSTNSNSAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP 401 Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433 + +I + A G + +RGDT+ + + F ++ ++ F Sbjct: 402 L----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDNTGGELPFWQQ-Q 453 Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493 ++ A +L+ ++ L A+R ++ + + AV L Sbjct: 454 FFIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRL 512 Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ + +NQ R+ + V Q R+ M + + A ++R+W ++ Sbjct: 513 SKDEQLQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 558 Query: 554 IE 555 E Sbjct: 559 HE 560 >gi|238912458|ref|ZP_04656295.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 560 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 131/542 (24%), Positives = 233/542 (42%), Gaps = 52/542 (9%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 44 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 103 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 104 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 161 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + A+ HLV++AV L G+VT++D +G LLT Sbjct: 162 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 221 Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 +N R++ L ++ I+ I L+ +G N + V A+L+ ++ E Sbjct: 222 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 281 Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------------HVSDRKV 320 Y P+ ++ S+ SE P N P + + Sbjct: 282 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 341 Query: 321 PLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373 P + N++ + E SNYE++ T + +ERLS+AVVVN L + Sbjct: 342 PQTSTSTNSNNAGPRSTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP 401 Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433 + +I + A G + +RGDT+ + + F + ++ F S Sbjct: 402 L----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDDTGGELPFWQQQS 454 Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493 ++ A +L+ ++ L A+R ++ + + AV L Sbjct: 455 -FIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRL 512 Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ + +NQ R+ + V Q R+ M + + A ++R+W ++ Sbjct: 513 SKDEQLQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 558 Query: 554 IE 555 E Sbjct: 559 HE 560 >gi|167617536|ref|ZP_02386167.1| flagellar MS-ring protein [Burkholderia thailandensis Bt4] Length = 594 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 135/525 (25%), Positives = 221/525 (42%), Gaps = 22/525 (4%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 78 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 137 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++S++ + AARVH+ +P Sbjct: 138 LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTVESVNAVRAARVHLAIPKP 195 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ V + AI LV+++VP++ +VT++D G LLT Sbjct: 196 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAITRLVSSSVPDMPAKNVTIVDQDGNLLTQ 255 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 256 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYA 315 Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH--------VSDRKVPLPRSLEN 328 P+ ++S S+ S S N P S+ + P + Sbjct: 316 PNGTPQQSAIRSQQTSTSTELAQSGTSGVPGALSNTPPQPASAPIVASNGQPAAPAATPV 375 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 +D+K+ +NYE++ ++RLS+AVVVN T+ GR Q LA++ Sbjct: 376 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLTADKLAQV 435 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G + +RGD++ + + F + D++ V Sbjct: 436 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 495 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 L ALRR V P + GL D L + Sbjct: 496 AALYFMFVRPALRRAFPPPAEPAAAVPALDG----PDDALALDGLPSPDKKQLAE-EDEE 550 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 +S N Y R + + + A +++ W E Sbjct: 551 HPALLAFESEKNRYERNLDYAR--TIARQDPKIVATVVKNWVSDE 593 >gi|224583532|ref|YP_002637330.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224468059|gb|ACN45889.1| flagellar M-ring protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 560 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 131/542 (24%), Positives = 234/542 (43%), Gaps = 52/542 (9%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 44 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 103 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 104 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 161 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + A+ HLV++AV L G+VT++D +G LLT Sbjct: 162 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 221 Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 +N R++ L ++ I+ I L+ +G N + V A+L+ ++ E Sbjct: 222 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 281 Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------------HVSDRKV 320 Y P+ ++ S+ SE P N P + + Sbjct: 282 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 341 Query: 321 PLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373 P + N++ + E SNYE++ T + +ERLS+AVVVN L + Sbjct: 342 PQTSTSTNSNSAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP 401 Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433 + +I + A G + +RGDT+ + + F ++ ++ F S Sbjct: 402 L----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDNTGGELPFWQQQS 454 Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493 ++ A +L+ ++ L A+R ++ + + AV L Sbjct: 455 -FIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRL 512 Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ + +NQ R+ + V Q R+ M + + A ++R+W ++ Sbjct: 513 SKDEQLQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 558 Query: 554 IE 555 E Sbjct: 559 HE 560 >gi|16765307|ref|NP_460922.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|120326|sp|P15928|FLIF_SALTY RecName: Full=Flagellar M-ring protein gi|154023|gb|AAA27096.1| fliF flagellar M-protein precursor [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16420504|gb|AAL20881.1| basal-body MS (membrane and supramembrane)-ring and collar protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|261247135|emb|CBG24958.1| flagellar basal-body M-ring protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993958|gb|ACY88843.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158483|emb|CBW17993.1| flagellar basal-body M-ring protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912959|dbj|BAJ36933.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|332988858|gb|AEF07841.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 560 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 131/542 (24%), Positives = 234/542 (43%), Gaps = 52/542 (9%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 44 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 103 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 104 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 161 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + A+ HLV++AV L G+VT++D +G LLT Sbjct: 162 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 221 Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 +N R++ L ++ I+ I L+ +G N + V A+L+ ++ E Sbjct: 222 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 281 Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------------HVSDRKV 320 Y P+ ++ S+ SE P N P + + Sbjct: 282 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 341 Query: 321 PLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373 P + N++ + E SNYE++ T + +ERLS+AVVVN L + Sbjct: 342 PQTSTSTNSNSAGPRSTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP 401 Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433 + +I + A G + +RGDT+ + + F ++ ++ F S Sbjct: 402 L----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDNTGGELPFWQQQS 454 Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493 ++ A +L+ ++ L A+R ++ + + AV L Sbjct: 455 -FIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRL 512 Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ + +NQ R+ + V Q R+ M + + A ++R+W ++ Sbjct: 513 SKDEQLQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 558 Query: 554 IE 555 E Sbjct: 559 HE 560 >gi|53717872|ref|YP_106858.1| flagellar MS-ring protein [Burkholderia pseudomallei K96243] gi|126453288|ref|YP_001064517.1| flagellar MS-ring protein [Burkholderia pseudomallei 1106a] gi|134283661|ref|ZP_01770360.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 305] gi|162210024|ref|YP_331831.2| flagellar MS-ring protein [Burkholderia pseudomallei 1710b] gi|226199798|ref|ZP_03795349.1| flagellar M-ring protein FliF [Burkholderia pseudomallei Pakistan 9] gi|242317746|ref|ZP_04816762.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1106b] gi|254182183|ref|ZP_04888780.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1655] gi|254188113|ref|ZP_04894625.1| flagellar M-ring protein FliF [Burkholderia pseudomallei Pasteur 52237] gi|254196619|ref|ZP_04903043.1| flagellar M-ring protein FliF [Burkholderia pseudomallei S13] gi|254259466|ref|ZP_04950520.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1710a] gi|52208286|emb|CAH34218.1| flagellar M-ring protein [Burkholderia pseudomallei K96243] gi|126226930|gb|ABN90470.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1106a] gi|134245070|gb|EBA45165.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 305] gi|157935793|gb|EDO91463.1| flagellar M-ring protein FliF [Burkholderia pseudomallei Pasteur 52237] gi|169653362|gb|EDS86055.1| flagellar M-ring protein FliF [Burkholderia pseudomallei S13] gi|184212721|gb|EDU09764.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1655] gi|225928149|gb|EEH24185.1| flagellar M-ring protein FliF [Burkholderia pseudomallei Pakistan 9] gi|242140985|gb|EES27387.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1106b] gi|254218155|gb|EET07539.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1710a] Length = 598 Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 132/525 (25%), Positives = 219/525 (41%), Gaps = 21/525 (4%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 81 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 140 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++SI+ + AARVH+ +P Sbjct: 141 LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 198 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ V + A+ +V+++VP++ +VT++D G LLT Sbjct: 199 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 258 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 259 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 318 Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH--------VSDRKVPLPRSLEN 328 P+ ++S S+ S S N P S+ + P + Sbjct: 319 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 378 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 +D+K+ +NYE++ ++RLS+AVVVN T+ GR Q LA++ Sbjct: 379 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQV 438 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G + +RGD++ + + F + D++ V Sbjct: 439 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 498 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 L ALRR P GL D L + Sbjct: 499 AALYFMFVRPALRRAFPPPAEPAA---AAVPALDGPDDMLALDGLPSPDKKQLAE-EDEE 554 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ N Y R + + + A +++ W E Sbjct: 555 HPALLAFENERNRYERNLDYAR--TIARQDPKIVATVVKNWVSDE 597 >gi|146312175|ref|YP_001177249.1| flagellar MS-ring protein [Enterobacter sp. 638] gi|145319051|gb|ABP61198.1| flagellar M-ring protein FliF [Enterobacter sp. 638] Length = 565 Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 132/549 (24%), Positives = 232/549 (42%), Gaps = 57/549 (10%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 + SP Y LY + D I L++ NI +R +DNG +I VP+ V + R+ LA Sbjct: 42 MVLWAKSPDYRTLYSNVSDQDGGAIVTQLTQLNIPYRFADNGGAIEVPADKVHELRLRLA 101 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 QGLP + G+EL D+ FG++ F ++I RALEGE+ARTI+++ + ARVH+ M Sbjct: 102 QQGLPKGGA-VGFELLDQE-KFGISQFSEQINYQRALEGELARTIETLGPVKTARVHLAM 159 Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 P F + P+ASV + A+ HLV++AV L G+VTV+D +G L Sbjct: 160 PKPSLFVREQKNPSASVTVTLEPGRALDEGQISAVTHLVSSAVAGLPTGNVTVVDQSGHL 219 Query: 217 LTANEMER-NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LT + ++ L ++ I+ I L +G N + V A++N D ++ E Sbjct: 220 LTQSNTSSRDLNDAQLKYANDVEGRIQRRIEAILGPIVGSSNIHAQVTAQINFDNKEQTE 279 Query: 276 IVYDPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDRKV------------ 320 Y P+ +++ S+ +E P N P ++ Sbjct: 280 EQYSPNGDAAQAVMRSRQLNTTEQIGGQNPGGVPGALSNQPAPANSAPISTPPANQQNGQ 339 Query: 321 --------------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 S + E +NYE++ T + ++RLS+AVVVN Sbjct: 340 QNGQQNNQQQQTTSTAASSGPRNSSRNETTNYEVDRTIRHTKMNVGDVQRLSVAVVVNYK 399 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 L + + +I + A G +RGD++ + + F + ++ Sbjct: 400 TLPDGKPL----PLTTDQMKQIEDLTREAMGFTEKRGDSLNVVNSPFTAT---DETGGEL 452 Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486 F S +++A +L+ ++ L A+R A++ + + + + I Sbjct: 453 PFWQQQS-FIEQMLSAGRWLLVLIVAWLLWRKAIRPQLTRR-AEEAKAAQEMMSARQDIE 510 Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546 AV L ++ + R + R+ + V Q R+ M + + A ++ Sbjct: 511 EAVEVRLSKDEQ-----------TQQRRVNQRLGAEVMSQ---RIREMSDNDPRVVALVI 556 Query: 547 RKWARSEIE 555 R+W ++ E Sbjct: 557 RQWMSNDHE 565 >gi|205357292|ref|ZP_02346550.2| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205322643|gb|EDZ10482.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 585 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 130/548 (23%), Positives = 234/548 (42%), Gaps = 58/548 (10%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 63 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 122 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 123 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 180 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + A+ HLV++AV L G+VT++D +G LLT Sbjct: 181 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 240 Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 +N R++ L ++ I+ I L+ +G N + V A+L+ ++ E Sbjct: 241 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 300 Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP-HVSDRKVPLPRSLEN----- 328 Y P+ ++ S+ SE P N P ++ + P + + Sbjct: 301 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 360 Query: 329 ---------------------TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367 + ++ E SNYE++ T + +ERLS+AVVVN Sbjct: 361 PQTSTSTSTSTSTNSNSAGPRSTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKT 420 Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVS 427 L + + +I + A G + +RGDT+ + + F + ++ Sbjct: 421 LADGKPL----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDDTGGELP 473 Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISS 487 F S ++ A +L+ ++ L A+R ++ + + Sbjct: 474 FWQQQS-FIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRR-VEEAKAAQEQAQVRQETEE 531 Query: 488 AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILR 547 AV L ++ + +NQ R+ + V Q R+ M + + A ++R Sbjct: 532 AVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIR 577 Query: 548 KWARSEIE 555 +W ++ E Sbjct: 578 QWMSNDHE 585 >gi|126441455|ref|YP_001057275.1| flagellar MS-ring protein [Burkholderia pseudomallei 668] gi|217425051|ref|ZP_03456547.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 576] gi|254295774|ref|ZP_04963231.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 406e] gi|126220948|gb|ABN84454.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 668] gi|157805913|gb|EDO83083.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 406e] gi|217392071|gb|EEC32097.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 576] Length = 598 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 132/525 (25%), Positives = 219/525 (41%), Gaps = 21/525 (4%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 81 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 140 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++SI+ + AARVH+ +P Sbjct: 141 LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 198 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ V + A+ +V+++VP++ +VT++D G LLT Sbjct: 199 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 258 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 259 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 318 Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH--------VSDRKVPLPRSLEN 328 P+ ++S S+ S S N P S+ + P + Sbjct: 319 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 378 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 +D+K+ +NYE++ ++RLS+AVVVN T+ GR Q LA++ Sbjct: 379 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQV 438 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G + +RGD++ + + F + D++ V Sbjct: 439 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 498 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 L ALRR P GL D L + Sbjct: 499 AALYFMFVRPALRRAFPPPAEPAA---AAVPALDGPDDVLALDGLPSPDKKQLAE-EDEE 554 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ N Y R + + + A +++ W E Sbjct: 555 HPALLAFENERNRYERNLDYAR--TIARQDPKIVATVVKNWVSDE 597 >gi|237810412|ref|YP_002894863.1| flagellar M-ring protein FliF [Burkholderia pseudomallei MSHR346] gi|237505247|gb|ACQ97565.1| flagellar M-ring protein FliF [Burkholderia pseudomallei MSHR346] Length = 598 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 131/526 (24%), Positives = 223/526 (42%), Gaps = 23/526 (4%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 81 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 140 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++SI+ + AARVH+ +P Sbjct: 141 LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 198 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ V + A+ +V+++VP++ +VT++D G LLT Sbjct: 199 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 258 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 259 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 318 Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH--------VSDRKVPLPRSLEN 328 P+ ++S S+ S S N P S+ + P + Sbjct: 319 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 378 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 +D+K+ +NYE++ ++RLS+AVVVN T+ GR Q LA++ Sbjct: 379 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQV 438 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G + +RGD++ + + F + D++ V Sbjct: 439 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 498 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQ-D 507 L ALRR + L P A+ P+ N + + Sbjct: 499 AALYFMFVRPALRR--AFPPPAEPAAAAVPALDGPDDVLALDGLPSPDKNQLAEEDEEHP 556 Query: 508 IFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 N ++R + + + + A +++ W E Sbjct: 557 ALLAFENERNRYERNLDYA-----RTIARQDPKIVATVVKNWVSDE 597 >gi|161613462|ref|YP_001587427.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161362826|gb|ABX66594.1| hypothetical protein SPAB_01179 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 531 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 131/542 (24%), Positives = 234/542 (43%), Gaps = 52/542 (9%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 15 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 74 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 75 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 132 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + A+ HLV++AV L G+VT++D +G LLT Sbjct: 133 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 192 Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 +N R++ L ++ I+ I L+ +G N + V A+L+ ++ E Sbjct: 193 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 252 Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------------HVSDRKV 320 Y P+ ++ S+ SE P N P + + Sbjct: 253 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 312 Query: 321 PLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373 P + N++ + E SNYE++ T + +ERLS+AVVVN L + Sbjct: 313 PQTSTSTNSNNAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP 372 Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433 + +I + A G + +RGDT+ + + F ++ ++ F S Sbjct: 373 L----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDNTGGELPFWQQQS 425 Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493 ++ A +L+ ++ L A+R ++ + + AV L Sbjct: 426 -FIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRL 483 Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ + +NQ R+ + V Q R+ M + + A ++R+W ++ Sbjct: 484 SKDEQLQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 529 Query: 554 IE 555 E Sbjct: 530 HE 531 >gi|326622865|gb|EGE29210.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 531 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 131/542 (24%), Positives = 234/542 (43%), Gaps = 52/542 (9%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 15 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 74 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 75 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 132 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + A+ HLV++AV L G+VT++D +G LLT Sbjct: 133 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 192 Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 +N R++ L ++ I+ I L+ +G N + V A+L+ ++ E Sbjct: 193 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 252 Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------------HVSDRKV 320 Y P+ ++ S+ SE P N P + + Sbjct: 253 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 312 Query: 321 PLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373 P + N++ + E SNYE++ T + +ERLS+AVVVN L + Sbjct: 313 PQTSTSTNSNSAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP 372 Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433 + +I + A G + +RGDT+ + + F ++ ++ F S Sbjct: 373 L----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDNTGGELPFWQQQS 425 Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493 ++ A +L+ ++ L A+R ++ + + AV L Sbjct: 426 -FIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRL 483 Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ + +NQ R+ + V Q R+ M + + A ++R+W ++ Sbjct: 484 SKDEQLQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 529 Query: 554 IE 555 E Sbjct: 530 HE 531 >gi|18182538|gb|AAL65160.1|AF453480_2 flagellar MS ring protein [Burkholderia cepacia] Length = 587 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 126/528 (23%), Positives = 219/528 (41%), Gaps = 28/528 (5%) Query: 38 AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97 A + +P Y LY L D I AL +AN+ ++ +D G +I VPS+ V + R+ L Sbjct: 75 ALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSNQVHETRLKL 134 Query: 98 AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 AA GLP S G+EL D FG++ F ++I RALEGE+ RTI+SI+ + ARVH+ Sbjct: 135 AAMGLPKGGS-VGFELMD-NQKFGISQFAEQINYQRALEGELQRTIESINAVRGARVHLA 192 Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 +P F + P+ASV + V +AI +V++ VP++ +VT++D G Sbjct: 193 IPKPSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGN 252 Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LLT + L VQ ++H + I+ LA G N RS V A+L+ + Sbjct: 253 LLTQTASASGLDASQLKYVQQVEHNTQKRIDAILAPIFGAGNARSQVSADLDFSKIEQTS 312 Query: 276 IVYDPDSKVERSIRLSKDAQRSE----------TSQPESAVTVEQNMPHVSDRKVPLPRS 325 Y P+ +++ S+ + ++ + P++ Sbjct: 313 ESYGPNGTPQQAAIRSQQTSSATELAQAARRACRARCRTRRRSRPPRRSSPGNGQNAPQT 372 Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385 +D+K++ +NYE++ T ++RLS+AVVVN + + G Q + L Sbjct: 373 TPVSDRKDQTTNYELDKTIRHTEQPMGSVKRLSVAVVVNYQPVADAKGHVTMQPLPPAKL 432 Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445 A++ ++V A G + +RGD++ + + F + D+++ + Sbjct: 433 AQVEQLVKDAMGYDEKRGDSVNVVNSAFSTVSDPYADLPWWRQPDMIAMAKEAAKWLGIA 492 Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505 L A+RR + + A D + L Sbjct: 493 AAAAALYFMFVRPAMRRAFPPPEPAAPALAAPEDAVALDGLPAPDKAAEEPDPLLL---- 548 Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ N Y R + + + A +++ W E Sbjct: 549 --------GFENEKNRYERNLDYAR--TIARQDPKIVATVVKNWVSDE 586 >gi|330818622|ref|YP_004362327.1| Flagellar M-ring protein FliF [Burkholderia gladioli BSR3] gi|327371015|gb|AEA62371.1| Flagellar M-ring protein FliF [Burkholderia gladioli BSR3] Length = 599 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 123/525 (23%), Positives = 218/525 (41%), Gaps = 25/525 (4%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL ++NI ++ +D G +I VP+S+V + R+ LA+ G Sbjct: 86 WSRAPDYKVLYSNLSDRDGGAIIAALQQSNIPYQFTDAGGAILVPASLVHETRLKLASMG 145 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RTI SI+ + AARVH+ +P Sbjct: 146 LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELERTIASINAVRAARVHLAIPKP 203 Query: 162 GSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV + V AI +VA+ VP++ +VT++D G LL+ Sbjct: 204 SVFVREREAPSASVFVDLYPGRVLDDGQVLAITRMVASGVPDMPAKNVTIVDQDGNLLSQ 263 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + + L VQ ++ + I+ LA G N R+ V A+++ + + Sbjct: 264 QQSAAGLDANQLKYVQQVERNTQKRIDAILAPMFGAGNTRAQVSADVDFSRAEQTSESFS 323 Query: 280 PDSK----VERSIRLSKDAQRSETSQPESAVTVEQNMPH-------VSDRKVPLPRSLEN 328 P+ RS + S + S++ N P Sbjct: 324 PNGTQQQAAIRSQQTSSSTEMSQSG-AGGVPGALSNTPPQPASAPITGASGAAGTPPTPI 382 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 +D+K+ +NYE+N ++RLS+AVVVN + + G Q L ++ Sbjct: 383 SDRKDSTTNYELNKTVSHVEQATGGIKRLSVAVVVNNLPVADAKGHVTMQPLSADKLRQV 442 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G +++RGD++ + + F E + D+++ + + Sbjct: 443 EQLVKDAMGFDAKRGDSVNVVNSQFTELADPLANVPWWRTPDMIAMAKDIAKWLGIGVAA 502 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 L A+RR + + P P A+ ++ +S + Sbjct: 503 AALYFMFVRPAMRRAFPPPEPAAA----SAGALPGPDEPALDGLPALESSLGAQASPEAA 558 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + R + + + + A +++ W E Sbjct: 559 LLSFEADKQRYERNLDYAKM-----IARQDPKIVATVVKNWVTDE 598 >gi|321224614|gb|EFX49677.1| Flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 531 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 131/542 (24%), Positives = 234/542 (43%), Gaps = 52/542 (9%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 15 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 74 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 75 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 132 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + A+ HLV++AV L G+VT++D +G LLT Sbjct: 133 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 192 Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 +N R++ L ++ I+ I L+ +G N + V A+L+ ++ E Sbjct: 193 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 252 Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------------HVSDRKV 320 Y P+ ++ S+ SE P N P + + Sbjct: 253 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 312 Query: 321 PLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373 P + N++ + E SNYE++ T + +ERLS+AVVVN L + Sbjct: 313 PQTSTSTNSNSAGPRSTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP 372 Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433 + +I + A G + +RGDT+ + + F ++ ++ F S Sbjct: 373 L----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDNTGGELPFWQQQS 425 Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493 ++ A +L+ ++ L A+R ++ + + AV L Sbjct: 426 -FIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRL 483 Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ + +NQ R+ + V Q R+ M + + A ++R+W ++ Sbjct: 484 SKDEQLQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 529 Query: 554 IE 555 E Sbjct: 530 HE 531 >gi|29141395|ref|NP_804737.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213646788|ref|ZP_03376841.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|29137022|gb|AAO68586.1| flagellar basal-body M-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 560 Score = 425 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 130/542 (23%), Positives = 233/542 (42%), Gaps = 52/542 (9%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 44 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 103 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 104 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 161 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + A+ HLV++AV L G+VT++D +G LLT Sbjct: 162 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 221 Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 +N R++ L ++ I+ I L+ +G N + V A+L+ ++ E Sbjct: 222 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 281 Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------------HVSDRKV 320 Y P+ ++ S+ SE P N P + + Sbjct: 282 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 341 Query: 321 PLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373 P + N++ + E SNYE++ T + +ERLS+AVVVN L + Sbjct: 342 PQTSTSTNSNNAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP 401 Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433 + +I + A G + +RGDT+ + + F ++ ++ F S Sbjct: 402 L----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDNTGGELPFWQQQS 454 Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493 ++ A +L+ ++ L A+ ++ + + AV L Sbjct: 455 -FIDQLLAAGRWLLVLVVAWILWRKAVHPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRL 512 Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ + +NQ R+ + V Q R+ M + + A ++R+W ++ Sbjct: 513 SKDEQLQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 558 Query: 554 IE 555 E Sbjct: 559 HE 560 >gi|188534120|ref|YP_001907917.1| flagellar MS-ring protein [Erwinia tasmaniensis Et1/99] gi|188029162|emb|CAO97034.1| Flagellar basal-body M-ring protein [Erwinia tasmaniensis Et1/99] Length = 571 Score = 425 bits (1092), Expect = e-116, Method: Composition-based stats. Identities = 127/548 (23%), Positives = 240/548 (43%), Gaps = 56/548 (10%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y LY L D I L++ N+ ++ D G ++ VP++ V + R+ LA+Q Sbjct: 46 LWAKQPDYRVLYNNLSNEDGGAIVTQLTQMNVPYKFDDRGGALLVPAAQVHELRLRLASQ 105 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL DK FG++ F ++I RALEGE+ARTI ++ + ARVH+ MP Sbjct: 106 GLPKGGA-VGFELLDKE-KFGISQFSEQINYQRALEGELARTIATLGPVKDARVHLAMPK 163 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + A+ H+V+++V + G+VTV+D +G+LLT Sbjct: 164 PTLFVREQKSPSASVTLALQPGRALDEGQINAVVHMVSSSVAGMPQGNVTVVDQSGRLLT 223 Query: 219 ANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 N+ R++ L ++ + I L +G N + V A+++ + ++ + Sbjct: 224 QNDTTGRDLNDAQLKYASDVETRYQQRIEAILGPIVGNSNVHAQVTAQIDFNKREKTDEQ 283 Query: 278 YDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMP--------------------- 313 Y P+S E+ S+ SE +SA V N P Sbjct: 284 YAPNSNPEQQAVRSRQTSNSEQLGGQSAGGVPGALSNQPAPANAGPVTTPNNTNANGANG 343 Query: 314 -------HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 ++ ++ + + + +NYE+N + T + +++RLS+AVVVN Sbjct: 344 ANANNGQPANNAASGAQKTSPSNTRSDNTTNYEVNRTILHTKMNVGEVQRLSVAVVVNYR 403 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 + G+ ++ + +I + A G + +RGD++ + + F +N Sbjct: 404 S--DAAGKPI--ALNEAQIKQIEDLTREAMGYSEKRGDSLNVVNSPFTQNSDLGDELPFW 459 Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486 + + F LV +V +L L L R ++ + + + Sbjct: 460 KQPAFIDQMFEAGRWLLVLIVAFILYRKLLRPQLLRKAALEKSTRE------------AA 507 Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546 ++ + +++ ++D R + R+++ V Q R+ M E + A ++ Sbjct: 508 TSAARNSTQQEGVSVK-LSKDELDQERKSEHRMSAEVMSQ---RIREMSENDPRVVALVI 563 Query: 547 RKWARSEI 554 R+W + E+ Sbjct: 564 RQWMKDEL 571 >gi|186477678|ref|YP_001859148.1| flagellar MS-ring protein [Burkholderia phymatum STM815] gi|184194137|gb|ACC72102.1| flagellar M-ring protein FliF [Burkholderia phymatum STM815] Length = 593 Score = 425 bits (1092), Expect = e-116, Method: Composition-based stats. Identities = 136/532 (25%), Positives = 229/532 (43%), Gaps = 31/532 (5%) Query: 38 AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97 + +P Y LY + D I AL +AN+ ++ S+ G +I +P+ V + R+ L Sbjct: 78 GLVLWSRAPDYKVLYSNVSDQDGGAIVAALQQANVPYKFSEAGGAILIPADQVHEMRLRL 137 Query: 98 AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 A+QGLP S S G+EL D FG++ F ++I RALEGE+ RTI+SIS + ARVH+ Sbjct: 138 ASQGLPKSGS-VGFELMD-NQKFGISQFAEQINYQRALEGELQRTIESISTVKTARVHLA 195 Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 +P F + P+ASV++ + AI H+VA+AVP++ + VT++D G Sbjct: 196 IPKPTVFVRDREAPSASVLVNLYPGRMLDEGQVVAITHMVASAVPDMSVRGVTIVDQDGN 255 Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LLT A + L Q I+ + I+ L G N S+V A+++ Q++ Sbjct: 256 LLTQAGANGAGLDATQLKYRQQIERNTQQRIDAILGPMFGTGNAHSSVSADIDFSRQELT 315 Query: 275 EIVY----DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPH--------VSDRKVPL 322 Y DP RS + S + S++ N P S Sbjct: 316 SEKYAPNNDPQQAAIRSQQTSTATEMSQSG-ASGVPGALSNQPPQPASAPITASANGASG 374 Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382 + +D K+ +NYE++ T ++RLS+AVVVN R+ + G + Q Sbjct: 375 VTTTPISDHKDSTTNYELSKTVSHTEAAVGGIKRLSVAVVVNYMRVFDAKGHATMQPISA 434 Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINA 442 LA+++++V A G + RGDT+ + S F + ++ D+++ + Sbjct: 435 DKLAQVDQLVKEAMGYDQARGDTVKVISSAFQQIADPDADLPWWRTKDMIAMYKQIATYL 494 Query: 443 LVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALD 502 + LV L + ALRR + + +A + +L Sbjct: 495 GIGLVALFLYFVMVKPALRRAFPPPPEAVAALPSPDEPVLDGLPTAAAVAAEEDVEGSLV 554 Query: 503 SSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + D + RNL+ + + + A +++ W E Sbjct: 555 ALESDKAKYERNLEYA-------------RQIARQDPKIVATVVKSWVSDEH 593 >gi|291085209|ref|ZP_06352408.2| flagellar M-ring protein FliF [Citrobacter youngae ATCC 29220] gi|291072341|gb|EFE10450.1| flagellar M-ring protein FliF [Citrobacter youngae ATCC 29220] Length = 557 Score = 424 bits (1091), Expect = e-116, Method: Composition-based stats. Identities = 125/541 (23%), Positives = 229/541 (42%), Gaps = 53/541 (9%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ N+ +R ++ +I VP+ V + R+ LA Q Sbjct: 44 LWAKAPDYRTLFSNLSDQDGGAIVTQLTQMNVPYRFTEGSGAIEVPADKVHELRLRLAQQ 103 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + ARVH+ +P Sbjct: 104 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKRARVHLALPK 161 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + A+ HLV++AV L G+VT++D G LLT Sbjct: 162 PSLFVREQKAPSASVTVNLEPGRALDEGQISAVTHLVSSAVAGLPPGNVTLVDQAGHLLT 221 Query: 219 ANEMER-NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 + ++ L ++ I+ I L+ +G N + V A+L+ ++ E Sbjct: 222 QSNTSSRDLNDAQLKYASDVEGRIQRRIESILSPIVGNGNVHAQVTAQLDFANKEQTEEQ 281 Query: 278 YDPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDRKV-------------- 320 Y P+ +++ S+ SE + P N P ++ Sbjct: 282 YRPNGDDSQAVLRSRQLNVSEQIGSGAPGGVPGALSNQPAPANTAPIATPPANQQNAQTT 341 Query: 321 ----PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA 376 + + ++ E SNYE++ T + ++RLS+AVVVN L + Sbjct: 342 QTTNNSSNAGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPL-- 399 Query: 377 DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHF 436 + +I + A G + +RGDT+ + + F + G + + Sbjct: 400 --PLTAEQMKQIEDLTREAMGFSDKRGDTLNVVNSPFTATD-DSMGELPLWKQPFFIDQ- 455 Query: 437 ATVINALVFLVGTLLVTFLGLHALRR--LHNIDDAKKGEVGGKSILSPPPISSAVTTGLM 494 +++A +L+ L+ L A+R L ++AK + T Sbjct: 456 --LMSAGRWLLVLLVAWILWRKAVRPQLLRRSEEAKAAQEQ--------------TRIRQ 499 Query: 495 PNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + ++D + R R+ + V Q R+ M + + A ++R+W ++ Sbjct: 500 ETEEAVEVRLSKDEQTQQRRTNQRLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSNDH 556 Query: 555 E 555 E Sbjct: 557 E 557 >gi|304398855|ref|ZP_07380725.1| flagellar M-ring protein FliF [Pantoea sp. aB] gi|304353559|gb|EFM17936.1| flagellar M-ring protein FliF [Pantoea sp. aB] Length = 575 Score = 424 bits (1091), Expect = e-116, Method: Composition-based stats. Identities = 136/552 (24%), Positives = 231/552 (41%), Gaps = 57/552 (10%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 + P Y LY L D I L++ NI +R ++NG ++ VP + V + R+ LA Sbjct: 45 MVLWAKQPSYSVLYNNLTDEDGGAIVTQLTQMNIPYRFAENGGALMVPEANVHELRLRLA 104 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 QGLP S G+EL DK FG++ F +++ RALEGE+ARTI+S+ + +ARVH+ M Sbjct: 105 QQGLPKGGS-VGFELLDKE-KFGISQFSEQVNYQRALEGELARTIESLGPVKSARVHLAM 162 Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 P F + P+ASV + +AI H+V+++V L G+VTV+D TG+L Sbjct: 163 PKPTLFVREQKAPSASVTLTLQPGRALDEGQIQAIAHMVSSSVAGLPPGNVTVVDQTGRL 222 Query: 217 LT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LT ++ R++ L ++ + I L LG N + V A++N DT + + Sbjct: 223 LTRSDSAGRDLNDAQLKYSSEVEARYQQRIEAILNPILGQGNVHAQVTAQINFDTAEQTD 282 Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVSDRK------------- 319 Y P++ S S+ S+ S P N P ++ Sbjct: 283 EKYQPNANPSNSAIRSRQTSTSDQSGSPYPGGVPGALSNQPAPANTAPVTTPNNNAANGQ 342 Query: 320 -----------------VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 S ++++ NYE++ T + ++RLS+AVV Sbjct: 343 AANGQNNAANNASQTTSTAPASSGPTNSRRDDTVNYELDRTIRHTKVNVGDVQRLSVAVV 402 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 VN + + L +I + A G + RGD+I + + F + Sbjct: 403 VNF----RADDKGKAVALNEQQLKQIEDLTREAMGYSQSRGDSINVVNSQFNTTEPV--- 455 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482 T + F S F +++A +L+ L+ L +R + + Sbjct: 456 TTDLPFWQQQS-FFDQLMDAGKWLLVALVAFVLYRKMVRPHLVRKQ--------AAEKAA 506 Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542 +A P + ++D R +R+++ V Q R+ M E + Sbjct: 507 AEAVAARAATDQPQEEAFNVQLSKDELDQERKSNNRMSAEVMSQ---RIRDMSENDPRVV 563 Query: 543 AKILRKWARSEI 554 A ++R+W E+ Sbjct: 564 ALVIREWMSKEL 575 >gi|325918317|ref|ZP_08180454.1| flagellar basal-body M-ring protein/flagellar hook-basal body protein FliF [Xanthomonas vesicatoria ATCC 35937] gi|325535457|gb|EGD07316.1| flagellar basal-body M-ring protein/flagellar hook-basal body protein FliF [Xanthomonas vesicatoria ATCC 35937] Length = 574 Score = 424 bits (1091), Expect = e-116, Method: Composition-based stats. Identities = 119/569 (20%), Positives = 238/569 (41%), Gaps = 30/569 (5%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ Q+F SL TR L + ++I + + +A F+ P Y +LY L+ + Sbjct: 15 EKAGQWFDRVRSLQITRKLTMMAMIALAVGAGLAVFFWSQKPGYQSLYTGLDEKGNAEAA 74 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L A I F+I +ISVP + AR+ LA GL + G+EL +K FG++ Sbjct: 75 DLLRTAQIPFKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQ 134 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 F++ ALE E++RTI ++ + ARVH+ +P +F + +ASV++ Sbjct: 135 FVENARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQG 194 Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240 + +AI +LVA+++P++ VTV+D +G++L+ + + V+ + Sbjct: 195 LERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESS 254 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I + L G V +++ + +Y+ + RS ++S + + Sbjct: 255 YNQRIRELLEPMTGPGRVNPEVSVDMDFSVVEEARELYNGEPAKLRSEQVSDSSTSATG- 313 Query: 301 QPESAVTVEQNMPHV--------------SDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346 P+ N P + + K NYE++ Sbjct: 314 -PQGPPGATSNSPGQPPAPAVAGAPGTPAAANGQAAAPAAPTESSKSATRNYELDRTLQH 372 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 T +++R+S+AV+++ G+ +Q + L I +V A G ++ RGDT+ Sbjct: 373 TRQPAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQAVGFDAARGDTV 432 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHN 465 ++ + F+ + + + ++ A V L + F + LR+L Sbjct: 433 SVMNAPFVREAVAGEEGPKWWEDPRVQNGLRLLVGA----VVVLALLFGVVRPTLRQLTG 488 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 + K E G + +P + ++ DN + D + ++ I + Sbjct: 489 VTAVKDKERGAGNDGTP----QSADVRMVNEDNDLMPGLEDDTAQIGQEKKTPIALPDAY 544 Query: 526 QSDLRL-LHMIEINEERFAKILRKWARSE 553 + +R+ ++ + +R A++++ W SE Sbjct: 545 EERMRVAREAVKADSKRVAQVVKGWVASE 573 >gi|213053157|ref|ZP_03346035.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|289829461|ref|ZP_06547073.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 531 Score = 424 bits (1091), Expect = e-116, Method: Composition-based stats. Identities = 130/542 (23%), Positives = 233/542 (42%), Gaps = 52/542 (9%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 15 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 74 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 75 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 132 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + A+ HLV++AV L G+VT++D +G LLT Sbjct: 133 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 192 Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 +N R++ L ++ I+ I L+ +G N + V A+L+ ++ E Sbjct: 193 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 252 Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------------HVSDRKV 320 Y P+ ++ S+ SE P N P + + Sbjct: 253 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 312 Query: 321 PLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373 P + N++ + E SNYE++ T + +ERLS+AVVVN L + Sbjct: 313 PQTSTSTNSNNAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP 372 Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433 + +I + A G + +RGDT+ + + F ++ ++ F S Sbjct: 373 L----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDNTGGELPFWQQQS 425 Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493 ++ A +L+ ++ L A+ ++ + + AV L Sbjct: 426 -FIDQLLAAGRWLLVLVVAWILWRKAVHPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRL 483 Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ + +NQ R+ + V Q R+ M + + A ++R+W ++ Sbjct: 484 SKDEQLQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 529 Query: 554 IE 555 E Sbjct: 530 HE 531 >gi|62180544|ref|YP_216961.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62128177|gb|AAX65880.1| flagellar biosynthesis; basal-body MS(membrane and supramembrane)-ring and collar protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322715020|gb|EFZ06591.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 560 Score = 424 bits (1091), Expect = e-116, Method: Composition-based stats. Identities = 131/542 (24%), Positives = 235/542 (43%), Gaps = 52/542 (9%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 44 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 103 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 104 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 161 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + A+ HLV++AV L +G+VT++D +G LLT Sbjct: 162 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPLGNVTLVDQSGHLLT 221 Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 +N R++ L ++ I+ I L+ +G N + V A+L+ ++ E Sbjct: 222 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 281 Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------------HVSDRKV 320 Y P+ ++ S+ SE P N P + + Sbjct: 282 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 341 Query: 321 PLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373 P + N++ + E SNYE++ T + +ERLS+AVVVN L + Sbjct: 342 PQTSTSTNSNSAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP 401 Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433 + +I + A G + +RGDT+ + + F ++ ++ F S Sbjct: 402 L----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDNTGGELPFWQQQS 454 Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493 ++ A +L+ ++ L A+R ++ + + AV L Sbjct: 455 -FIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRL 512 Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ + +NQ R+ + V Q R+ M + + A ++R+W ++ Sbjct: 513 SKDEQLQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 558 Query: 554 IE 555 E Sbjct: 559 HE 560 >gi|304312787|ref|YP_003812385.1| Flagellar basal-body M-ring protein [gamma proteobacterium HdN1] gi|301798520|emb|CBL46750.1| Flagellar basal-body M-ring protein [gamma proteobacterium HdN1] Length = 575 Score = 424 bits (1091), Expect = e-116, Method: Composition-based stats. Identities = 114/567 (20%), Positives = 236/567 (41%), Gaps = 31/567 (5%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + ++ +L R + L + + + + P + L+ + + + ++++ Sbjct: 20 NPIMAALDGLGNLPWLRQVGLMVGLAASVAIGFGVVLWSTEPEFRPLFTDVSMIEASQVA 79 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L+ I F++ + V + + AR+ LA +GLP +N GYEL DK FG + Sbjct: 80 DVLAREKIQFKVDPASGLVMVRAEKINDARMALAKEGLP-GGNNMGYELLDKEQGFGTSQ 138 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 FM++ R++EGE+A+TI S++ + ARVH+ +P F +PTASV + Sbjct: 139 FMEKTRYFRSIEGELAKTISSLTPVRNARVHLAIPKRSVFINDKRKPTASVFVELYPSRS 198 Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHE 240 + AI HLVA++VP + DVTV+D G+LL+ + E I + L I+ + Sbjct: 199 LERDQVAAIVHLVASSVPEMSSKDVTVVDQRGRLLSEDTSNGEMTIAARQLDYQHNIEEK 258 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE-- 298 I L LG + F+ + A+++ + + Y+PD RS + + + Sbjct: 259 YLGRIRDLLEPLLGPERFKVQLTADIDFNVVEQTAESYNPDLPALRSEQTLSEKSSAAGP 318 Query: 299 -------TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 ++QP A +V + ++ + +++ NYE++ T Sbjct: 319 MGVPGALSNQPPGAASVPEQATGSNNAGNNASSTDAGNQRQQATRNYELDRTISHTRRQV 378 Query: 352 YKLERLSIAVVVNKGRLTEVLG-----RSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 ++RLS+AVV++ + ++ L I ++ A G ++ RGD++ Sbjct: 379 GGIKRLSVAVVLDDKWQNPAADAAPGTQPTRVALSEAELERITLLIKDAVGYDAARGDSV 438 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHN 465 ++ + F Q + + + F VI + + +++ F L L+ L Sbjct: 439 SVINQPFSPVQFDSIPDLPIWQQAW----FQDVIRQVAGWLVVIILIFGVLRPILKGLAF 494 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 + + +S L+ ++ ++ S + + + Sbjct: 495 QGKEDEVDSSLESALASVGADGSLGDSSFAGADVTFSGSGPNPLLPGPDAS-------FE 547 Query: 526 QSDLRLLHMIEINEERFAKILRKWARS 552 Q + ++ + R A++++ W + Sbjct: 548 QHIDAIRALVAEDPRRVAQVVKSWIEA 574 >gi|77457763|ref|YP_347268.1| flagellar MS-ring protein [Pseudomonas fluorescens Pf0-1] gi|77381766|gb|ABA73279.1| flagellar M-ring protein [Pseudomonas fluorescens Pf0-1] Length = 595 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 128/592 (21%), Positives = 244/592 (41%), Gaps = 66/592 (11%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y LY L D ++ L Sbjct: 25 LSFLENLSEMTVLRQVGLLVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDAKQVMDTL 84 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + A+I + + N ++ V + + +AR+ LAA G+ S N G+E+ DK G + FM+ Sbjct: 85 ASADIPYTVEPNSGALLVKADDLSRARLKLAAAGVTPSDGNIGFEILDKEQGLGTSQFME 144 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 R LEGE+ARTI S++ + ARVH+ +P F + +P+ASV++ + + Sbjct: 145 ATRYRRGLEGELARTISSLNNVKGARVHLAIPKSSVFVRDERKPSASVLVELYSGRSLEP 204 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEM 243 AI +LVA +VP L +TV+D G LL+ A E + GK + ++ + Sbjct: 205 GQVVAIINLVATSVPELSKSQITVVDQKGNLLSDQAENAEMTMAGKQFDYSRRMESMLTQ 264 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 ++ L LG D +++ V A+++ + ++PD RS + + QR+ ++ P+ Sbjct: 265 RVHNILQPVLGNDRYKAEVSADVDFSAVESTAEQFNPDQPALRSEQSVNE-QRTASNGPQ 323 Query: 304 SAVTVEQNMPHVSDRKVPLPRSL----------------------------------ENT 329 N P Sbjct: 324 GVPGALSNQPPSPASAPQTTGGAAAPASMVQPGQPLVDANGQQIMDPATGQPMLAPYPAD 383 Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG-RLTEVLGRSADQGKIDSYLAEI 388 +++ N+E++ T +L RLS++VVV+ ++ G + LA Sbjct: 384 KRQQSTKNFELDRSISHTKQQQGRLNRLSVSVVVDDQVKINPANGETTRAPWSADELARF 443 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALV 444 ++V A G ++ RGD++++ +M F + + Q F DI+ + Sbjct: 444 TRLVQDAVGFDASRGDSVSVINMPFSAERGEVIADIPFYSQPWFWDIVKQ---------- 493 Query: 445 FLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDS 503 ++G L + L LR L+NI K + G + ND ++L Sbjct: 494 -VLGVLFILVLVFGVLRPVLNNITGGGKSKELAGLGGDMELGGMGGLDGELSNDRVSLGG 552 Query: 504 SNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + S S +++N+ + ++ + R A+++++W ++ Sbjct: 553 PTSILLPSPSEGYDAQLNA---------IKSLVAEDPGRVAQVVKEWINADE 595 >gi|161610775|ref|NP_946615.2| flagellar MS-ring protein [Rhodopseudomonas palustris CGA009] Length = 538 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 142/554 (25%), Positives = 242/554 (43%), Gaps = 24/554 (4%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + LL F K LG R++ + +V + + F V+ P LY L V D + I Sbjct: 1 MQNLLGFLKG---LGAARLMAMIAVTVALVGFFAFVIMRVSQPQMTTLYTDLSVEDSSSI 57 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L I F + ++G+ + VP V + R+ LA GYE+FDK ++ G T Sbjct: 58 IKELERQGIPFEMRNDGAILLVPKDKVTRLRMKLAEG-GLPKGGGVGYEIFDKSDALGTT 116 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 SF+Q I +RALEGE++RTI++I + AARVH+V+P+ F + P+AS+++R Sbjct: 117 SFVQNINHLRALEGELSRTIRAIDRVQAARVHLVLPERPLFSREAPEPSASIVLRVRGAL 176 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQA--IQHEI 241 + AIRHLVA+AV L V+++D G+LL + + S + + + Sbjct: 177 EPQQVRAIRHLVASAVNGLKPQRVSIVDEAGQLLADGSASGEQVEGATSDERRAAFEKRM 236 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 I +++ +G R V A+ + + +DP+ +V RS + +++ + TS Sbjct: 237 RNQIEGIVSSVVGSGRARVQVSADFDYNKITQTSDKFDPEGRVLRSSQTREES--AATSA 294 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 + VTV +P + + R + K EE +NYEI+ + + ++ RLS+AV Sbjct: 295 ADGQVTVNNELPGANQGQGAGARDVSK--KSEETNNYEISRVTKTEVTEAGRVNRLSVAV 352 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 +V+ G + L I +V +A G + +RGD I + ++ F E Sbjct: 353 LVDGAYTKNDKGELVYAERPKEQLDRIAALVRSAIGFDQKRGDQIEVVNLKFAEAPQVEK 412 Query: 422 GTVQVSFMDIL---SRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 M + +I V + L+V F+ + L + + + Sbjct: 413 LPEPAGLMGMFQFTKDDIMNMIQLGVMFLLGLVVLFMVIRPLVKRI---------LAAEP 463 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 A+ G +P I D S +++ V QS R+ + E N Sbjct: 464 APEAAGGLPALADGTVPQ--IGADGQPVPASVPSMIDIAQVQGQVHAQSVHRVGELAERN 521 Query: 539 EERFAKILRKWARS 552 A I+R+W Sbjct: 522 PNETAAIIRQWLAE 535 >gi|237731986|ref|ZP_04562467.1| flagellar MS-ring protein [Citrobacter sp. 30_2] gi|226907525|gb|EEH93443.1| flagellar MS-ring protein [Citrobacter sp. 30_2] Length = 557 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 125/541 (23%), Positives = 230/541 (42%), Gaps = 49/541 (9%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 + +P Y L+ L D I L++ N+ +R ++ +I VP+ V + R+ LA Sbjct: 42 MVLWAKAPDYRTLFSNLSDQDGGAIVTQLTQMNVPYRFTEGSGAIEVPADKVHELRLRLA 101 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 QGLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + ARVH+ M Sbjct: 102 QQGLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKRARVHLAM 159 Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 P F + P+ASV + A+ HLV++AV L G+VT++D G L Sbjct: 160 PKPSLFVREQKAPSASVTVNLEPGRALDEGQISAVTHLVSSAVAGLPPGNVTLVDQAGHL 219 Query: 217 LTANEMER-NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LT + ++ L ++ ++ I L+ +G N + V A+L+ ++ E Sbjct: 220 LTQSNTSSRDLNDAQLKYASDVEGRVQRRIESILSPIVGNGNVHAQVTAQLDFANKEQTE 279 Query: 276 IVYDPDSKVERSIRLSKDAQRSE--------------TSQPESAVTVEQNMPHVSDRKVP 321 Y P+ +++ S+ SE ++QP A T P + + Sbjct: 280 EQYRPNGDDSQAVLRSRQLNVSEQIGSGAPGGVPGALSNQPAPANTAPIANPPANQQNAQ 339 Query: 322 LPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR 374 ++ N++ + E SNYE++ T + ++RLS+AVVVN L + Sbjct: 340 TTQTANNSNNAGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPL 399 Query: 375 SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSR 434 + +I + A G + +RGDT+ + + F + G + Sbjct: 400 ----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPFTATD-DSMGELPFWKQPFFID 454 Query: 435 HFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLM 494 ++ A +L+ L+ L A+R + V ++ + Sbjct: 455 Q---LMTAGRWLLVLLVAWILWRKAVRPQLVRRSEEAKAVQEQTRIR------------Q 499 Query: 495 PNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + ++D + R R+ + V Q R+ M + + A ++R+W ++ Sbjct: 500 ETEEAVEVRLSKDEQTQQRRTNQRLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSNDH 556 Query: 555 E 555 E Sbjct: 557 E 557 >gi|288549808|ref|ZP_05968261.2| flagellar M-ring protein FliF [Enterobacter cancerogenus ATCC 35316] gi|288317495|gb|EFC56433.1| flagellar M-ring protein FliF [Enterobacter cancerogenus ATCC 35316] Length = 543 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 132/543 (24%), Positives = 236/543 (43%), Gaps = 51/543 (9%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 + SP Y LY L D I L++ NI +R +DNG ++ VP+ V + R+ LA Sbjct: 26 MVLWAKSPDYRTLYSNLSDQDGGAIVTQLTQMNIPYRFADNGGALEVPADKVHELRLRLA 85 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 QGLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ M Sbjct: 86 QQGLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAM 143 Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 P F + P+ASV + A+ HLV++AV L G+VT++D +G L Sbjct: 144 PKPSLFVREQKSPSASVTVNLEPGRALDEGQISAVTHLVSSAVAGLPPGNVTLVDQSGHL 203 Query: 217 LT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LT +N R++ L ++ ++ I L +G N + V A+++ ++ E Sbjct: 204 LTQSNSAGRDLNDAQLKYAADVEGRLQRRIEAILGPVVGSSNVHAQVTAQIDFANKEQTE 263 Query: 276 IVYDPDSKVERSIRLSKDAQRSE--------------TSQPESAVTVEQNMP-------- 313 Y P+ +++ S+ +E ++QP A P Sbjct: 264 EQYSPNGNPSQAVMRSRQVNENEQVGGPYPGGVPGALSNQPAPANAAPITTPAANQQNGQ 323 Query: 314 -HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372 + + S T + E +NYE++ T + ++RLS+AVVVN L + Sbjct: 324 QNNAQTTSTAASSGPRTSSRNETTNYEVDRTIRHTKLNVGDVQRLSVAVVVNYKTLPDGK 383 Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDIL 432 + +I + A G + +RGDT+ + + F + ++ F Sbjct: 384 PL----PLTTEQMKQIEDLTREAMGYSEKRGDTLNVVNSPF---SSVDETGGELPFWQQQ 436 Query: 433 SRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTG 492 + +++A +L+ ++ L +R A+ + ++ AV Sbjct: 437 A-FIDQLMSAGRWLLVLIVAWLLWRKGVRPQLQRR-AEAERAAQEQQVTRQDTEEAVEVR 494 Query: 493 LMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 L ++ I +NQ R+ + V Q R+ M + + A ++R+W + Sbjct: 495 LSKDEQIQQRRANQ-----------RMGAEVMSQ---RIREMSDNDPRVVALVIRQWMGN 540 Query: 553 EIE 555 E E Sbjct: 541 EHE 543 >gi|192289867|ref|YP_001990472.1| flagellar MS-ring protein [Rhodopseudomonas palustris TIE-1] gi|192283616|gb|ACE99996.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris TIE-1] Length = 538 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 142/554 (25%), Positives = 242/554 (43%), Gaps = 24/554 (4%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + LL F K LG R++ + +V + + F V+ P LY L V D + I Sbjct: 1 MQNLLGFLKG---LGAARLMAMIAVTVALVGFFAFVIMRVSQPQMTTLYTDLSVEDSSSI 57 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L I F + ++G+ + VP V + R+ LA GYE+FDK ++ G T Sbjct: 58 IKELERQGIPFEMRNDGAILMVPKDKVTRLRMKLAEG-GLPKGGGVGYEIFDKSDALGTT 116 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 SF+Q I +RALEGE++RTI++I + AARVH+V+P+ F + P+AS+++R Sbjct: 117 SFVQNINHLRALEGELSRTIRAIDRVQAARVHLVLPERPLFSREAPEPSASIVLRVRGAL 176 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQA--IQHEI 241 + AIRHLVA+AV L V+++D G+LL + + S + + + Sbjct: 177 EPQQVRAIRHLVASAVNGLKPQRVSIVDEAGQLLADGSASGEQVEGATSDERRAAFEKRM 236 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 I +++ +G R V A+ + + +DP+ +V RS + +++ + TS Sbjct: 237 RNQIEGIVSSVVGSGRARVQVSADFDYNKITQTSDKFDPEGRVLRSSQTREES--AATSA 294 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 + VTV +P + + R + K EE +NYEI+ + + ++ RLS+AV Sbjct: 295 ADGQVTVNNELPGANQGQGAGARDVSK--KSEETNNYEISRVTKTEVTEAGRVNRLSVAV 352 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 +V+ G + L I +V +A G + +RGD I + ++ F E Sbjct: 353 LVDGAYTKNDKGELVYAERPKEQLDRIAALVRSAIGFDQKRGDQIEVVNLKFAEAPQVEK 412 Query: 422 GTVQVSFMDIL---SRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 M + +I V + L+V F+ + L + + + Sbjct: 413 LPEPAGLMGMFQFTKDDIMNMIQLGVMFLLGLVVLFMVIRPLVKRI---------LAAEP 463 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 A+ G +P I D S +++ V QS R+ + E N Sbjct: 464 APEAAGGLPALADGTVPQ--IGADGQPVPASVPSMIDIAQVQGQVHAQSVHRVGELAERN 521 Query: 539 EERFAKILRKWARS 552 A I+R+W Sbjct: 522 PNETAAIIRQWLAE 535 >gi|285018180|ref|YP_003375891.1| flagellar biosynthesis lipoprotein flif [Xanthomonas albilineans GPE PC73] gi|283473398|emb|CBA15903.1| probable flagellar biosynthesis lipoprotein flif [Xanthomonas albilineans] Length = 569 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 126/567 (22%), Positives = 237/567 (41%), Gaps = 29/567 (5%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ +F SL TR + L ++I V + + F+ P Y LY L+ + Sbjct: 13 EKAGAWFDRLQSLQITRRIGLMAMIAVAVAAGLFVFFWSQKPDYTPLYTGLDEKGTAEAT 72 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L A I F++ + +I+VP + AR+ LA GL SS N G+E+ +K FG++ Sbjct: 73 DLLRTAQIPFKLDPSTGAITVPQEKLYDARLKLAGSGLTDSSGNMGFEVMEKDPGFGVSQ 132 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 F++ ALE E+ARTI S+ + ARVH+ +P +F + +ASV++ + Sbjct: 133 FVENARYQHALETELARTIASLRPVREARVHLAIPKPSAFTRQREAASASVVLELRGGNT 192 Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240 + +AI ++VA+++P+L VTV+D +G++LT + + ++ + Sbjct: 193 LERNQVDAIVNMVASSIPDLSPNRVTVVDQSGRMLTIADPNSDAALNAAQFDQIRRQESS 252 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I + L G V +++ + +Y+ D RS ++S + Sbjct: 253 FNQRIRELLEPMTGPGRVNPEVSVDMDFSVTEEARELYNGDPPKLRSEQVSDSN--TSKG 310 Query: 301 QPESAVTVEQNMPHVSDRK-------------VPLPRSLENTDKKEEQSNYEINTKSIAT 347 P+ N P + + K NYE++ T Sbjct: 311 GPQGVPGATSNSPGATPTGQPAAAGTPAAAAGANQQAANPTESSKSATRNYELDRTLQHT 370 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 +++R+S+AV+V+ G+ +Q + L I +V A G N+ RGDT++ Sbjct: 371 RQPAGRIKRVSVAVLVDHVPRPGPKGKMVEQALSAAELTRIEGLVKQAVGFNAERGDTVS 430 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + + F+ + V++ L ++G +V L LR Sbjct: 431 VMNAPFVHEATETTDKPSWW-------QDPRVMSGLRMVLGAAVVLALLFGVLRPALRQI 483 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 G K + P + ++ ++ + N L S +D S + + I + + Sbjct: 484 AGPAPAAGAKDKDNATPHDAKLS--MLEDGNPMLQSLGEDTASIAGSGNPAIALPDAYEE 541 Query: 528 DLRL-LHMIEINEERFAKILRKWARSE 553 LRL ++ + +R A++++ W SE Sbjct: 542 RLRLAREAVKQDSKRVAQVVKGWVASE 568 >gi|34498591|ref|NP_902806.1| flagellar M-ring protein [Chromobacterium violaceum ATCC 12472] gi|34104445|gb|AAQ60803.1| flagellar M-ring protein [Chromobacterium violaceum ATCC 12472] Length = 579 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 134/572 (23%), Positives = 249/572 (43%), Gaps = 31/572 (5%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 +L + +L R ++ + + + + A +P Y L+ L D +++ Sbjct: 16 RLNEAGDRFKALPNNRKILFLTALAAIFAVVVGAVLLNRTPSYKILFSNLADRDGGQVTA 75 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 AL + N+ +++ + G ISVP+ V R+ LAAQGLP +S G+EL D FG++ F Sbjct: 76 ALQQMNVPYQLGE-GGVISVPADKVYDVRLKLAAQGLPKASG-VGFELMD-NQKFGISQF 132 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 +++ R++EGE+ARTI++IS + +ARVHI P F + PTASVM++ + Sbjct: 133 AEQVNYQRSIEGELARTIEAISSVQSARVHIATPKQSVFVREQQSPTASVMLQLYPGRML 192 Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAIQHE 240 I HLV+++VPNL + +VT++D G LL+ + + + L V+ I+ Sbjct: 193 DGGQVAGILHLVSSSVPNLPLKNVTIVDQDGNLLSKQAGPDENSGLDQRQLGFVRQIEEG 252 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK----VERSIRLSKDAQR 296 I L G N R+ V A ++ + Y P+S RS ++S+ Sbjct: 253 YVKRIEDILEPIFGRGNARAQVTANVDFSETEQTSETYRPNSSPNPSATRSQQISEKLVN 312 Query: 297 SE----------TSQPESAVTVEQNMPHVSDRKV----PLPRSLENTDKKEEQSNYEINT 342 ++QP SA + +P + S T +++ +NYE++ Sbjct: 313 GSANPTGVPGALSNQPPSAASAPITLPPGAAPGTANLSGGSVSASGTLQRDITTNYEVDK 372 Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402 T ++RLS AVVVN R+ + G + +IN +V A G NS R Sbjct: 373 TIQHTKVPTGVVKRLSAAVVVNYRRMPDKSGEMKPTPLTPQEVQQINNLVKEAMGYNSGR 432 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 GDT+ + + F +N T+Q +D +S + +++ + + L + F + + R Sbjct: 433 GDTLNVVNAAFADNAQPV--TMQERVIDYVSGNGTSLVKYGLLGIAVLYLLFGVVRPIMR 490 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 A G++ + G+ + ++ + Sbjct: 491 DLVRPPAPAPGAEGEAAAAGAAGPGGRLLGVAGEEGEPGVAAAMAGGGEDPREAQK---R 547 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + + +++ + A+I+++W ++ Sbjct: 548 QYSSNLEAVRELVKSDPRMAAQIIKEWISADE 579 >gi|316935488|ref|YP_004110470.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris DX-1] gi|315603202|gb|ADU45737.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris DX-1] Length = 537 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 140/554 (25%), Positives = 239/554 (43%), Gaps = 25/554 (4%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + LL F K LG R++ + +V + + F V+ P LY L V D + I Sbjct: 1 MQNLLSFLKG---LGAARLMAMIAVTVALVGFFAFVIMRVSQPQMTTLYTDLSVEDSSSI 57 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L I F + + G+ + VP V + R+ LA GYE+FDK ++ G T Sbjct: 58 IKELERQGIPFEMRNEGAILLVPKDKVTRLRMKLAEG-GLPKGGGVGYEIFDKSDALGTT 116 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 SF+Q I +RALEGE++RTI++I + AARVH+V+P F + P+AS+++R Sbjct: 117 SFVQNINHLRALEGELSRTIRAIDRVQAARVHLVLPARPLFSREAPEPSASIVLRVRGAL 176 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQA--IQHEI 241 + AIRHLVA+AV L V+++D G+LL + + S + + + Sbjct: 177 EPQQVRAIRHLVASAVNGLKPQRVSIVDEAGQLLADGSASGEQMEGATSDERRAAFEKRM 236 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 I +++ +G R V A+ + + +DP+ +V RS + +++ + TS Sbjct: 237 RHQIEGIVSSVVGSGRARVQVSADFDYNKITQTSDTFDPEGRVLRSSQTREES--AATSA 294 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 + VTV +P + + R + K EE +NYEI+ + + ++ RLS+AV Sbjct: 295 ADGQVTVNNELPGANQGQGAGARDVSK--KSEETNNYEISRVTKTEVTEAGRVNRLSVAV 352 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 +V+ + G + L I +V +A G + +RGD I + ++ F E Sbjct: 353 LVDGAYTKDDKGELVYAERSKEQLDRIAALVRSAIGFDQKRGDQIEVVNLKFAEAPQIEK 412 Query: 422 GTVQVSFMDIL---SRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 M + +I V + L+V F+ + L + + G + Sbjct: 413 LPEPAGLMGMFQFTKDDIMNMIQLGVMFLLGLVVLFMVIRPLVKRVLAAEQTPEAAGLPA 472 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 + I +D S +++ V QS R+ + E N Sbjct: 473 LADGTV------------PQIGVDGQPVAPGMPSMIDIAQVQGQVHAQSVHRVGELAERN 520 Query: 539 EERFAKILRKWARS 552 A I+R+W Sbjct: 521 PNETAAIVRQWLAE 534 >gi|330808215|ref|YP_004352677.1| flagellar MS-ring protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376323|gb|AEA67673.1| flagellar MS-ring protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 594 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 125/591 (21%), Positives = 244/591 (41%), Gaps = 65/591 (10%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y LY L D ++ L Sbjct: 25 LSFLENLSEMTMLRQVGLLVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDAKQVMETL 84 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + A+I + + N ++ V + V +AR+ LAA G+ + N G+E+ DK G + FM+ Sbjct: 85 ASADIPYTVEPNSGALLVKADDVARARLKLAAAGVTPTDGNIGFEILDKDQGLGTSQFME 144 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 R LEGE+ARTI S++ + ARVH+ +P F + +P+ASV++ + + Sbjct: 145 ATRYRRGLEGELARTISSLNNVKGARVHLAIPKSSVFVRDERKPSASVLVELYSGRSLEP 204 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEM 243 AI +LVA +VP L +TV+D G LL+ A E + GK + ++ + Sbjct: 205 GQVLAIINLVATSVPELSKSQITVVDQKGNLLSDQAENSELTMAGKQFDYSRRMEGMLTQ 264 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 ++ L LG D +++ V A+++ + ++PD RS + + QR+ ++ P+ Sbjct: 265 RVHNILQPILGNDRYKAEVSADVDFSAVESTSEQFNPDQPALRSEQSVNE-QRTASNGPQ 323 Query: 304 SAVTVEQNMPHVSDRKV----------------------------------PLPRSLENT 329 N P P+ Sbjct: 324 GVPGALSNQPPSPASAPQTTGGATAAAGMVQPGQPLIDANGQQIMDPATGQPMLAPYPAD 383 Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN-KGRLTEVLGRSADQGKIDSYLAEI 388 +++ N+E++ T +L RLS+AVVV+ + ++ G ++ LA Sbjct: 384 KRQQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDQVKVNAANGETSRAPWSADELARF 443 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALV 444 ++V A G ++ RGD++++ ++ F + + Q F D++ + Sbjct: 444 TRLVQDAVGFDASRGDSVSVINVPFSLERGEVVADIPFYSQPWFWDVVKQ---------- 493 Query: 445 FLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSS 504 ++G L + L LR + N G + ND ++L Sbjct: 494 -VLGVLFILVLVFGVLRPVLNNITGGGKSKQLAGFGDVELGGMGGLDGELANDRVSLGGP 552 Query: 505 NQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + S S +++N+ + ++ + R A+++++W ++ Sbjct: 553 QSILLPSPSEGYDAQLNA---------IKSLVAEDPGRVAQVVKEWINADE 594 >gi|238758092|ref|ZP_04619272.1| Flagellar M-ring protein [Yersinia aldovae ATCC 35236] gi|238703630|gb|EEP96167.1| Flagellar M-ring protein [Yersinia aldovae ATCC 35236] Length = 569 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 127/549 (23%), Positives = 232/549 (42%), Gaps = 60/549 (10%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 + SP Y LY L D I L++ NI +R +DNG ++ VP+ V + R+ LA Sbjct: 45 MLWAKSPDYRVLYSNLSDRDGGDIVTQLTQLNIPYRFADNGGALLVPAEKVHETRLRLAQ 104 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 QGLP + G+EL D+ FG++ F ++I RALEGE++RTI ++ ++ RVH+ MP Sbjct: 105 QGLPKGGA-VGFELLDQE-KFGISQFSEQINYQRALEGELSRTIGTLGPVMNVRVHLAMP 162 Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + PTASV + AI ++V+++V L G+VTV+D G+LL Sbjct: 163 KPSLFVREQKSPTASVTLALQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQMGRLL 222 Query: 218 TANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 T ++ R++ L +++ + I LA +G N + V A+++ ++ + Sbjct: 223 TQSDSAGRDLNAAQLKFTNEVENRFQRRIENILAPMVGNGNVHAQVTAQVDFANREQTDE 282 Query: 277 VYDP----DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSD--------------- 317 Y P + RS ++S Q T+ N P ++ Sbjct: 283 EYKPNQDANQGAVRSQQVSTSEQLGGTNV-GGVPGALSNQPPIAPVAPIEAPQAAPAAGA 341 Query: 318 -------------RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 + + + ++ +N+E+N T ++RLS+AVVVN Sbjct: 342 TANTANTANRPATTTAAKSSATSSNSRHDQTTNFEVNRTIRHTQQQAGMVQRLSVAVVVN 401 Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424 G LA++ + A G ++ RGDT+ + + F + ++ Sbjct: 402 YGSDKAGK----PIALTKDQLAQVESLTREAMGFSTTRGDTLNVVNTPFSASDDTGGHSL 457 Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPP 484 F ++NA +L+ L+ L +R + + S+ + Sbjct: 458 PFWQQPSF---FDQLLNAGRYLLILLVAWILWRKLVRPMIAKKQV--ADNAAASVNNIVQ 512 Query: 485 ISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAK 544 ++A T + +AL N Q ++++ V Q R+ + + + A Sbjct: 513 TAAASETAKQSKEELALRKKN----------QQKVSAEVQAQ---RIRELADKDPRVVAL 559 Query: 545 ILRKWARSE 553 ++R+W ++ Sbjct: 560 VIRQWMSND 568 >gi|170722857|ref|YP_001750545.1| flagellar MS-ring protein [Pseudomonas putida W619] gi|169760860|gb|ACA74176.1| flagellar M-ring protein FliF [Pseudomonas putida W619] Length = 592 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 127/590 (21%), Positives = 245/590 (41%), Gaps = 65/590 (11%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 + F ++ + + R + L + + + A + P Y LY L D ++ L Sbjct: 25 MAFLENISQMPMLRQVGLLVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDTKQVMDTL 84 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + A+I + + N ++ V + + +AR+ LAA G+ S N G+EL DK G + FM+ Sbjct: 85 AAADIPYNVEPNSGALLVKADDLSRARLKLAAAGVAPSDGNVGFELLDKEQGLGTSQFME 144 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 R+LEGE+ART+ S++ + AARVH+ +P F + +P+ASV++ + Sbjct: 145 ATRYRRSLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDERKPSASVLVELYPGRSLEA 204 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEM 243 AI +LVA +VP LD VTV+D G LL+ + + GK + ++ + Sbjct: 205 GQVMAIVNLVATSVPELDKSQVTVVDQKGNLLSDQLQDTALTMAGKQFDYSRRMEGMLTQ 264 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 ++ L LG D +++ V A+L+ + ++PD RS + + + S + P+ Sbjct: 265 RVHNILQPVLGNDRYKAEVSADLDFSAVESTSEQFNPDQPALRSEQSVNEQRASSSG-PQ 323 Query: 304 SAVTVEQNMPHVS----------------------------------DRKVPLPRSLENT 329 N P P+ Sbjct: 324 GVPGALSNQPPAGAAAPENATAAAPAAGAIQPGQPLVDANGQQIMDPATGQPMLAPYPAD 383 Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEIN 389 + + N+E++ T +L RLS+AVVV+ + G + LA Sbjct: 384 KRLQTTKNFELDRSISHTRQQQGRLTRLSVAVVVDDQVKVDAAGETTRAPWGAEDLARFT 443 Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALVF 445 ++V A G ++ RGD++T+ ++ F ++ + Q F DI+ + Sbjct: 444 RLVQDAVGFDASRGDSVTVINVPFAADRGEEIADIAFYQQPWFWDIVKQ----------- 492 Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505 ++G + + L LR + N + G+ + G + ND ++L Sbjct: 493 VLGVVFILVLVFGVLRPVLN-NITGGGKQAAATDSDMELGGMIGLDGELANDRVSLGGPT 551 Query: 506 QDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + S S ++++N+ + ++ + R A+++++W ++ Sbjct: 552 SILLPSPSEGYEAQLNA---------IKGLVAEDPGRVAQVVKEWINADE 592 >gi|331673452|ref|ZP_08374220.1| flagellar M-ring protein FliF [Escherichia coli TA280] gi|331069650|gb|EGI41037.1| flagellar M-ring protein FliF [Escherichia coli TA280] Length = 552 Score = 422 bits (1084), Expect = e-115, Method: Composition-based stats. Identities = 136/567 (23%), Positives = 248/567 (43%), Gaps = 49/567 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + LI+A V +M+ A + +P Y L+ L D I L++ Sbjct: 13 WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 71 NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247 AI HLV++AV L G+VT++D G LLT +N R++ L ++ I+ I Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQRSETSQPES 304 L+ +G N + V A+L+ +++ E Y P+ ++ S+ ++++S + P Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGG 308 Query: 305 AVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIATT 348 N P ++ S + ++ E SNYE++ T Sbjct: 309 VPGALSNQPAPANNAPISTPPANQNNRQQQANTTSNSGPRSTQRNETSNYEVDRTIRHTK 368 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 + ++RLS+AVVVN L + + + +I + A G + +RGD++ + Sbjct: 369 MNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLNV 424 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 + F + + ++ F + ++ A +L+ L+ L A+R Sbjct: 425 VNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRRA 480 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 V ++ + AV L ++ + +NQ R+ + V Q Sbjct: 481 EAMQAVQQQAQAREE-VEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ-- 526 Query: 529 LRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 527 -RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|149928162|ref|ZP_01916408.1| flagellar M-ring protein FliF [Limnobacter sp. MED105] gi|149823147|gb|EDM82385.1| flagellar M-ring protein FliF [Limnobacter sp. MED105] Length = 575 Score = 422 bits (1084), Expect = e-115, Method: Composition-based stats. Identities = 130/577 (22%), Positives = 243/577 (42%), Gaps = 44/577 (7%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + + + L + + + + + I + + + N Y L+ L D I Sbjct: 17 NPITNMQQRFAKLPQKNKMGILIGVPLLIAVIASLLMWANQTSYRVLFSGLNDQDGGAIV 76 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 AL++ + + + G++I VPS+ V R+ LA+QGLP S SG+E D G+T Sbjct: 77 EALTQMKVPYEFNTAGTAILVPSNKVYDTRLALASQGLPKGSV-SGFEAMD-NQKLGITQ 134 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 F +++ RALEGE+ R+IQSIS + +ARVH+ +P F + P+AS+++ Sbjct: 135 FQEQVNYQRALEGELVRSIQSISAVQSARVHLAIPKPSIFIREKQTPSASIVLNLFGSRT 194 Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQAIQHEI 241 I HLVA+++P ++ DV+++D +G+LLT ++E + L+ I+ + Sbjct: 195 LSEPQINGIVHLVASSLPGMNPEDVSIVDQSGRLLTGKTQLESGLNPTQLAYTNQIEQSL 254 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRS 297 I L+ G +N R+ V A ++ + + +Y P+ RS ++S+ S Sbjct: 255 TSRIVDILSPVFGSENVRATVTANMDYSMSERTDEIYKPNGDTTQATIRSQQISESNDGS 314 Query: 298 ETSQPESAVTVEQNMPHVS-----------------DRKVPLPRSLENTDKKEEQSNYEI 340 + P+ V N P + P ++ +K+ NYE+ Sbjct: 315 SNANPQGIPGVMANTPPGEAAANIGQNPQQALANGVNGGTSTPTQTNSSTRKDSTVNYEV 374 Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400 + T K+ERLS AVVVN +T+ G + + +++ +V A G + Sbjct: 375 DKSVQYTKSQVGKIERLSAAVVVNYKTITDPKGETRQVPLTPEEITQLDSLVKQAIGFDE 434 Query: 401 RRGDTITITSMDFLENQLFNSG-TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA 459 +RGD + + + F + + Q MD+ + L+ L Sbjct: 435 QRGDAVNVVNQAFTKVEEETIPMWAQQETMDLAKSLGMPI-------GVALIAAILVFGV 487 Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519 LR + + + G + + A G ND L+ ++ N Q ++ Sbjct: 488 LRPMMKPAEVDLFDEGPELLPGQRMPLLANQVG-GDNDAELLEQLQREGTLPGMNRQEKM 546 Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIED 556 +L + + + + A I++ W E ++ Sbjct: 547 E---------KLRQLAKEHPQIVASIVKNWVNGETQN 574 >gi|52428288|gb|AAU48881.1| flagellar M-ring protein FliF [Burkholderia mallei ATCC 23344] Length = 543 Score = 422 bits (1084), Expect = e-115, Method: Composition-based stats. Identities = 130/525 (24%), Positives = 218/525 (41%), Gaps = 21/525 (4%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 26 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 85 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++S + + AARV++ +P Sbjct: 86 LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTVESSNAVRAARVYLAIPKP 143 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ V + A+ +V+++VP++ +VT++D G LLT Sbjct: 144 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 203 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 204 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 263 Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH--------VSDRKVPLPRSLEN 328 P+ ++S S+ S S N P S+ + P + Sbjct: 264 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 323 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 +D+K+ +NYE++ ++RLS+AVVVN T+ GR Q LA++ Sbjct: 324 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQV 383 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G + +RGD++ + + F + D++ V Sbjct: 384 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 443 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 L ALRR P GL D L + Sbjct: 444 AALYFMFVRPALRRAFPPPAEPAA---AAVPALDGPDDMLALDGLPSPDKKQLAE-EDEE 499 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ N Y R + + + A +++ W E Sbjct: 500 HPALLAFENERNRYERNLDYAR--TIARQDPKIVATVVKNWVSDE 542 >gi|192359622|ref|YP_001982191.1| flagellar MS-ring protein [Cellvibrio japonicus Ueda107] gi|190685787|gb|ACE83465.1| flagellar M-ring protein FliF [Cellvibrio japonicus Ueda107] Length = 569 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 130/560 (23%), Positives = 246/560 (43%), Gaps = 27/560 (4%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 F + +SL R + L + + + A ++ Y LY +++ D + L Sbjct: 21 DFLEGFSSLNLLRQIGLIITLAASVAIGFAVVMWMQGDDYRPLYGRMDNLDAANVIDVLD 80 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 + I F++ N +I V + V AR+ LA GLP SS +G+EL DK G + F++ Sbjct: 81 QHKIKFKMDTNTGAILVAADDVHMARLKLAEFGLP-SSPVAGFELMDKEQPLGTSQFVEN 139 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV--YK 186 R++EGE+ARTI SI+ I +ARVH+ MP F + A+PTASV + Sbjct: 140 TRYQRSIEGELARTITSITSIRSARVHLAMPKKTVFVRDAAKPTASVFVEVFAGRTVAPA 199 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEMN 244 +AI +LVA++VP++ M +VTV+D G LL+ E ++ + + ++ + Sbjct: 200 QVKAIMNLVASSVPDMKMENVTVVDQHGSLLSTGEESSDLLLATRQHQYAKEVETSVIQR 259 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 IN L +G FR+ V A+++ + ++PD RS + ++ R+ + Sbjct: 260 INSILEPVVGDGKFRAQVNADIDFTAVEQAAETFNPDLPAIRSEQTLNES-RTGSELAGG 318 Query: 305 AVTVEQNMPHVSDRKVP----------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 N P + + P + + ++++ NYE++ T H L Sbjct: 319 IPGALTNQPPGTAAQAPEQIDPATGQPIQQQPPKNNREQATRNYELDRTISYTKHQQGTL 378 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 +RL++AVVV+ + G D+ L ++ +V A G ++ RGD++ + + F Sbjct: 379 KRLTVAVVVDDKVVRNAEGVETRVPWTDAELERLSILVRDAVGFSAVRGDSVNVLNSPFS 438 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 V+ + M + I L ++ L+V F L L + + + + Sbjct: 439 GIDASVQTQVEDA-MPWWQQWIMANIKYLAGILVILIVVFGLLRPLFKSLSRTGSSIADE 497 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFS-HSRNLQSRINSYVSKQSDLRLLH 533 L+ + A + ++ + L + + + + +IN+ + Sbjct: 498 EEARELAALEAAGAGKLDGISDETVTLTGGSAFMLPGPEQGYEEQINA---------IKG 548 Query: 534 MIEINEERFAKILRKWARSE 553 +I + R A++++KW + Sbjct: 549 LIADDPGRVAQVVKKWINRD 568 >gi|148266223|ref|YP_001232929.1| flagellar M-ring protein FliF [Geobacter uraniireducens Rf4] gi|146399723|gb|ABQ28356.1| flagellar M-ring protein FliF [Geobacter uraniireducens Rf4] Length = 525 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 127/563 (22%), Positives = 247/563 (43%), Gaps = 55/563 (9%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + + + + +L + LI+A V + ++ F A N Y L+ L D Sbjct: 1 MQEGFKKLLEPFLTLPPAKRLIVAGVAVASLVAFAALIVVANKTDYRPLFANLTTEDAGE 60 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L + + ++I+ +G +I VPS V R+ LA++GLP G+E+FD+ N FG+ Sbjct: 61 IVKKLKDQKVPYQIAADGKAILVPSDKVYDLRLSLASEGLPQGGG-VGFEIFDRKN-FGM 118 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T F+Q++ RAL+GE++RTI ++G+ ARVH+ + + F+ TASV+++ + Sbjct: 119 TEFVQKLNYQRALQGELSRTIAQLAGVEQARVHLAIAEKSLFKDNEKPTTASVVLKMKSN 178 Query: 183 SVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAI 237 + + + HLVA+++ +D +VTVLDS GK+L+ A+++ + + Sbjct: 179 HTLRENEVQGVVHLVASSIEGMDPENVTVLDSRGKMLSKVGASDLTSKMTSTMQETQRTY 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + +E + L +G + V A + + E YDP+S RS + S++ Sbjct: 239 EKNLEDRLQTLLDKVVGTGKSVARVSATFDFKQVEKYEERYDPESAAVRSEQRSEEK--- 295 Query: 298 ETSQPESAVTVEQNMPHVSDR---KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 A TV +P V P + K +E NYE++ + + Sbjct: 296 -----GGASTVAAGVPGVQSNMAKAAPAGVTSGGGSKSDETLNYEVSRSTARIIEPVGSM 350 Query: 355 ERLSIAVVVNKGRLTE------VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 ++S+A++V+ + ++ Q + L +I +V +A G N+ RGD +T+ Sbjct: 351 NKVSVAILVDGKYVAPASAKEGATAKAKYQPRTPDELQKIEALVKSAVGFNAERGDQVTV 410 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 ++ F E + + + + ++ L+ +G + FL + L Sbjct: 411 ANIPFQETDDGGASDQDKWWNAPIMQ---ALLKNLLIALGFFALLFLVIRPL-------- 459 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 + + P +A T +P D+ A+ + + + + Sbjct: 460 ----------LKTLKPHKAASTFQPLPEDDAAMQLAE----------VHKQQLEMQSLNQ 499 Query: 529 LRLLHMIEINEERFAKILRKWAR 551 L L+ ++ + + A+IL+ W Sbjct: 500 LELIEKVKQDPYQVAQILQNWLS 522 >gi|329901251|ref|ZP_08272776.1| Flagellar M-ring protein fliF [Oxalobacteraceae bacterium IMCC9480] gi|327549183|gb|EGF33775.1| Flagellar M-ring protein fliF [Oxalobacteraceae bacterium IMCC9480] Length = 564 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 131/575 (22%), Positives = 243/575 (42%), Gaps = 47/575 (8%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 A+ + L+ F + + GR +L+L + I++ +M + + P Y L+ D Sbjct: 9 AVPNPLISF--AESQGGRNLLLMLGAAIVIAVMAGVW--MWSQQPDYRVLFSNFTDRDGG 64 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L + N+ ++ ++ G +I VP+ V AR+ +AA GLP N G+EL + G Sbjct: 65 AIVTQLQQMNVPYKFAEGGGAILVPADQVHDARLRIAAMGLPKGG-NVGFELME-NQKLG 122 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 ++ F++++ RALEGE+AR++QSI + +ARVH+ MP F + +PTASV++ Sbjct: 123 VSQFLEQVNFQRALEGELARSVQSIGAVESARVHLAMPKASVFVRDQQKPTASVVLNLNP 182 Query: 182 PSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQA 236 + AI HLVA++VP+L G+++V+D G LL+ G L +Q Sbjct: 183 GRSLSEQQVSAIVHLVASSVPDLPPGNISVIDQNGNLLSDTSKAAKATGLDPTQLKYIQE 242 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 +Q I I + +G +N R+ A+++ T + Y P+S +S S+ + Sbjct: 243 VQQNIVRRIESIITPIVGPNNVRAEATADIDFSTSEQAAETYKPNSPPNQSTMRSQQSSE 302 Query: 297 SETSQPE--SAVTVEQNMPHVSDR------------------KVPLPRSLENTDKKEEQS 336 S+ S P N P + + +K+ Sbjct: 303 SQGSNPGAGGVPGALSNQPAANATAPINPPAPAPAPAAGQGVSTGATATAAVPSQKDMTV 362 Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT 396 NYE++ ++R+S+AVVVN ++T+ G+ ++ +I +V A Sbjct: 363 NYEVDKTVRYVQQPMGGVKRISVAVVVNYKQVTDKAGKVTATPLTEAERVQITDLVKEAM 422 Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456 G N RGDT+ + + F V + + + + +L+G + + +L Sbjct: 423 GFNKDRGDTLNVVNSAFAGVPKEVFPEVPIWKRPEMIQLAKEL---GKYLLGGIALLYLF 479 Query: 457 LHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ 516 LR + + + ++ T M + A ++ S S Q Sbjct: 480 FGVLRPMLKKFNTPQPKIRAVVDDE----DDEAETPEMRAMHAAERTTEVPAESASMAYQ 535 Query: 517 SRINSYVSKQSDLRLLHMIEINEERFAKILRKWAR 551 ++ + + + + A I++ W Sbjct: 536 QNLDLA---------KQLAKDDPKVVANIVKNWVS 561 >gi|308187290|ref|YP_003931421.1| Flagellar M-ring protein [Pantoea vagans C9-1] gi|308057800|gb|ADO09972.1| Flagellar M-ring protein [Pantoea vagans C9-1] Length = 575 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 136/553 (24%), Positives = 233/553 (42%), Gaps = 59/553 (10%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 + P Y LY L D I L++ NI +R ++NG ++ VP + V + R+ LA Sbjct: 45 MVLWAKQPSYSVLYNNLTDEDGGAIVTQLTQMNIPYRFAENGGALIVPEANVHELRLRLA 104 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 QGLP S G+EL DK FG++ F +++ RALEGE+ARTI+S+ + +ARVH+ M Sbjct: 105 QQGLPKGGS-VGFELLDKE-KFGISQFSEQVNYQRALEGELARTIESLGPVKSARVHLAM 162 Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 P F + P+ASV + +AI H+V+++V L G+VTV+D TG+L Sbjct: 163 PKPTLFVREQKAPSASVTLTLQPGRALDEGQIQAIAHMVSSSVAGLPPGNVTVVDQTGRL 222 Query: 217 LT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LT ++ R++ L ++ + I L LG N + V A++N DT + + Sbjct: 223 LTRSDNAGRDLNDAQLKYSSEVEARYQQRIEAILNPILGQGNVHAQVTAQINFDTSEQTD 282 Query: 276 IVYDPD----SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV----------- 320 Y P+ + RS + S + +S + P N P ++ Sbjct: 283 EKYQPNANPSNTAIRSRQTST-SDQSGSPYPGGVPGALSNQPAPANTAPVTTPNNNAANG 341 Query: 321 -------------------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 S ++++ NYE++ T + ++RLS+AV Sbjct: 342 QNANGQNNAANNASQTTSTAAASSAPTNSRRDDTVNYELDRSIRHTKVNVGDVQRLSVAV 401 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 VVN + + L +I + A G + RGD++ + + F + Sbjct: 402 VVNF----RADDKGKAVALNEQQLKQIEDLTREAMGYSQTRGDSVNVVNSQFNTTEAV-- 455 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 T + F S F ++NA +L+ L+ L +R + + Sbjct: 456 -TADLPFWQQQS-FFDQLMNAGKWLLIALVAFILYRKLVRPHLVRKQ--------AAEKA 505 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 +A P + ++D R +R+++ V Q R+ M E + Sbjct: 506 AAEAVAARAAAQQPEEEAFNVQLSKDELDQERKSNNRMSAEVMSQ---RIRDMSENDPRV 562 Query: 542 FAKILRKWARSEI 554 A ++R+W E+ Sbjct: 563 VALVIREWMSKEL 575 >gi|67641495|ref|ZP_00440272.1| flagellar M-ring protein FliF [Burkholderia mallei GB8 horse 4] gi|121601133|ref|YP_994240.1| flagellar MS-ring protein [Burkholderia mallei SAVP1] gi|124383455|ref|YP_001028106.1| flagellar MS-ring protein [Burkholderia mallei NCTC 10229] gi|126448962|ref|YP_001082916.1| flagellar MS-ring protein [Burkholderia mallei NCTC 10247] gi|161579508|ref|YP_104753.2| flagellar MS-ring protein [Burkholderia mallei ATCC 23344] gi|167004331|ref|ZP_02270091.1| flagellar M-ring protein FliF [Burkholderia mallei PRL-20] gi|254175223|ref|ZP_04881884.1| flagellar M-ring protein FliF [Burkholderia mallei ATCC 10399] gi|254201855|ref|ZP_04908219.1| flagellar M-ring protein FliF [Burkholderia mallei FMH] gi|254207184|ref|ZP_04913535.1| flagellar M-ring protein FliF [Burkholderia mallei JHU] gi|254359688|ref|ZP_04975959.1| flagellar M-ring protein FliF [Burkholderia mallei 2002721280] gi|121229943|gb|ABM52461.1| flagellar M-ring protein FliF [Burkholderia mallei SAVP1] gi|124291475|gb|ABN00744.1| flagellar M-ring protein FliF [Burkholderia mallei NCTC 10229] gi|126241832|gb|ABO04925.1| flagellar M-ring protein FliF [Burkholderia mallei NCTC 10247] gi|147747749|gb|EDK54825.1| flagellar M-ring protein FliF [Burkholderia mallei FMH] gi|147752726|gb|EDK59792.1| flagellar M-ring protein FliF [Burkholderia mallei JHU] gi|148028902|gb|EDK86834.1| flagellar M-ring protein FliF [Burkholderia mallei 2002721280] gi|160696268|gb|EDP86238.1| flagellar M-ring protein FliF [Burkholderia mallei ATCC 10399] gi|238522438|gb|EEP85882.1| flagellar M-ring protein FliF [Burkholderia mallei GB8 horse 4] gi|243060331|gb|EES42517.1| flagellar M-ring protein FliF [Burkholderia mallei PRL-20] Length = 598 Score = 420 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 130/525 (24%), Positives = 218/525 (41%), Gaps = 21/525 (4%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 81 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 140 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++S + + AARV++ +P Sbjct: 141 LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTVESSNAVRAARVYLAIPKP 198 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ V + A+ +V+++VP++ +VT++D G LLT Sbjct: 199 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 258 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 259 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 318 Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH--------VSDRKVPLPRSLEN 328 P+ ++S S+ S S N P S+ + P + Sbjct: 319 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 378 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 +D+K+ +NYE++ ++RLS+AVVVN T+ GR Q LA++ Sbjct: 379 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQV 438 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G + +RGD++ + + F + D++ V Sbjct: 439 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 498 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 L ALRR P GL D L + Sbjct: 499 AALYFMFVRPALRRAFPPPAEPAA---AAVPALDGPDDMLALDGLPSPDKKQLAE-EDEE 554 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ N Y R + + + A +++ W E Sbjct: 555 HPALLAFENERNRYERNLDYAR--TIARQDPKIVATVVKNWVSDE 597 >gi|323940403|gb|EGB36594.1| flagellar M-ring protein FliF [Escherichia coli E482] Length = 552 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 139/568 (24%), Positives = 250/568 (44%), Gaps = 51/568 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + LI+A V +M+ A + +P Y L+ L D I L++ Sbjct: 13 WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 71 NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQAIQHEIEMNINK 247 AI HLV++AV L G+VT++D G LLT N R++ L ++ I+ I Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQFNTSGRDLNDAQLKYASDVEGRIQRRIEA 248 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303 L+ +G N + V A+L+ +++ E Y P+ RS +L ++++S + P Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307 Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347 N P ++ S + ++ E SNYE++ T Sbjct: 308 GVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 + ++RLS+AVVVN L + + + +I + A G + +RGD++ Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLN 423 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + + F + + ++ F + A ++ A +L+ L+ L A+R Sbjct: 424 VVNSPFNSS---DESGGELPFWQQQA-FIAQLLAAGRWLLVLLVAWLLWRKAVRPQLTRR 479 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 A+ + + + + AV L ++ + +NQ R+ + V Q Sbjct: 480 -AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526 Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|293410294|ref|ZP_06653870.1| flagellar M-ring protein FliF [Escherichia coli B354] gi|291470762|gb|EFF13246.1| flagellar M-ring protein FliF [Escherichia coli B354] Length = 552 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 139/568 (24%), Positives = 251/568 (44%), Gaps = 51/568 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + LI+A V +M+ A + +P Y L+ L D I L++ Sbjct: 13 WLNRLRANPKIPLIIAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 71 NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247 AI HLV++AV L G+VT++D G LLT +N R++ L ++ I+ I Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303 L+ +G N + V A+L+ +++ E Y P+ RS +L ++++S +S P Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSSYPG 307 Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347 N P ++ S + ++ E SNYE++ T Sbjct: 308 GVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 + ++RLS+AVVVN L + + + +I + A G + +RGD++ Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLN 423 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + + F + + ++ F + ++ A +L+ L+ L A+R Sbjct: 424 VVNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLT-R 478 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 A+ + + + + AV L ++ + +NQ R+ + V Q Sbjct: 479 HAEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526 Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|332161342|ref|YP_004297919.1| flagellar MS-ring protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325665572|gb|ADZ42216.1| flagellar MS-ring protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863306|emb|CBX73430.1| flagellar M-ring protein [Yersinia enterocolitica W22703] Length = 559 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 127/538 (23%), Positives = 234/538 (43%), Gaps = 48/538 (8%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 + SP Y LY L D I L++ NI +R +DNG ++ +P+ V + R+ LA Sbjct: 45 MLWAKSPDYRVLYSNLNDRDGGDIVTQLTQLNIPYRFADNGGALLIPADKVHETRLRLAQ 104 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 QGLP + G+EL D+ FG++ F +++ RALEGE+ARTI ++ ++ RVH+ MP Sbjct: 105 QGLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIGTLGPVLNVRVHLAMP 162 Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + PTASV + AI ++V+++V L +VTV+D TG+LL Sbjct: 163 KPSLFVREQKSPTASVTLALQPGRALDDGQINAIVYMVSSSVAGLPPANVTVVDQTGRLL 222 Query: 218 TANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 T ++ R++ L +++ + I LA +G N + V A+++ +++ + Sbjct: 223 TQSDSAGRDLNAAQLKFTNEVENRFQRRIETILAPMVGSGNVHAQVTAQVDFASREQTDE 282 Query: 277 VYDP----DSKVERSIRLSKDAQRSET----------SQPESAVTVEQNMPHVSDRKVPL 322 Y P + RS ++S Q T +QP + +P + Sbjct: 283 EYKPNQAANQGAVRSQQVSTSEQLGGTNVGGVPGALSNQPSATPVAPIEVPQATPAAGAG 342 Query: 323 -------PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS 375 + + + ++ +N+E++ T ++RLS+AVVVN G Sbjct: 343 AAANAAKQTATSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVNYGSDKAGK--- 399 Query: 376 ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435 LA++ + A G ++ RGDT+ + + F + + Sbjct: 400 -PIALSKDQLAQVESLTREAMGFSTVRGDTLNVVNTPFNATDDASGSNLPFWQQPSF--- 455 Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495 F ++N +L+ L+ L +R L I ++ + S+ + + T Sbjct: 456 FDQLLNIGRYLLILLVAWILWRKLVRPL--IAKKQEADKAAASVNNIVQAAQTTETAKQT 513 Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + +AL N Q R+++ V Q R+ + + + A ++R+W ++ Sbjct: 514 KEELALRKKN----------QQRVSAEVQAQ---RIRELADKDPRIVALVIRQWMSND 558 >gi|90422618|ref|YP_530988.1| flagellar MS-ring protein [Rhodopseudomonas palustris BisB18] gi|90104632|gb|ABD86669.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris BisB18] Length = 544 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 186/555 (33%), Positives = 310/555 (55%), Gaps = 14/555 (2%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + + + LG R+ +LA V L ++++ P ++ LY L D+ Sbjct: 1 MVNREYAQKLWSNLLELGPRRLTVLAMVGLAVFFGVGGGAYYLSRPEFNVLYSGLSREDI 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 R+S L +AN+ F ++ G +I V +AR LA +GLP SS++ GYELFDK+ S Sbjct: 61 TRVSAVLRDANVPFDVNATGDTILVRPGQAAQARTLLADKGLP-SSTSGGYELFDKIGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEIARTIQ I G+ AARVHIVMP GSFR+ A PTASV++R Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQVIKGVKAARVHIVMPARGSFRREQAPPTASVVLRTD 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS-IVQAIQH 239 P+ K+A ++RHLVAAAVP + VTVLDS G LL A++ +++ + + + Sbjct: 180 GPADAKTARSVRHLVAAAVPGMTPDKVTVLDSDGSLLGADDDGTGTTPTTMANLQRVVSR 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 I+ N++KAL +LG+DNF +V +L+ D +Q E VYDP+S+V+RS+R ++ + S++ Sbjct: 240 LIQDNVSKALTPYLGLDNFEVSVATQLSTDKRQTNETVYDPESRVQRSVRAVRERETSQS 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 ++ TV+QN+P S + ++E+ +NYE+++K+ T D Y + ++ + Sbjct: 300 LDRQTPTTVQQNLPDQQLNAGGGKNSNDEKQRREDVTNYEVSSKTTTTVSDGYVVNKMFL 359 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AV+VN+ RL LG + +++ +AEI+++ + A G++ RGD I +++++F+E Sbjct: 360 AVLVNRPRLIASLGDKVSESAMEAKVAEISQLAATAAGLDRPRGDQIQVSAVEFIEGARD 419 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + ++F ++L R ++A+ L ++ + GL + + +K E Sbjct: 420 LAPVPGITFTEVLMRQSGNFVSAITILAVAGMLIWFGLRPAINVV-LASSKSSEGAPLLA 478 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 + A A+ + QD ++ RL +++++E Sbjct: 479 AEAAALLGADAAVAAQIAREAMPNLVQD-----------VSRRAQHAPQKRLEQIVQLDE 527 Query: 540 ERFAKILRKWARSEI 554 ++ A IL++W R E Sbjct: 528 KQAAAILKQWIRQEE 542 >gi|300904828|ref|ZP_07122654.1| flagellar M-ring protein FliF [Escherichia coli MS 84-1] gi|301305281|ref|ZP_07211378.1| flagellar M-ring protein FliF [Escherichia coli MS 124-1] gi|300403255|gb|EFJ86793.1| flagellar M-ring protein FliF [Escherichia coli MS 84-1] gi|300839487|gb|EFK67247.1| flagellar M-ring protein FliF [Escherichia coli MS 124-1] gi|315257230|gb|EFU37198.1| flagellar M-ring protein FliF [Escherichia coli MS 85-1] Length = 552 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 136/573 (23%), Positives = 252/573 (43%), Gaps = 52/573 (9%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 + L++ + + +++ S + + +A + +P Y L+ L D I Sbjct: 9 KSLEWLNRLRANPKIPLIVTGS---AAVAVMVALILWAKTPDYRTLFSNLSDQDGGAIVS 65 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F Sbjct: 66 QLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQF 123 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 124 SEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRAL 183 Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIE 242 AI HLV++AV L G+VT++D G LLT +N R++ L ++ I+ Sbjct: 184 DEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQ 243 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSE 298 I L+ +G N + V A+L+ +++ E Y P+ RS +L ++++S Sbjct: 244 RRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSG 302 Query: 299 TSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINT 342 + P N P ++ S + ++ E SNYE++ Sbjct: 303 SGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDR 362 Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402 T + ++RLS+AVVVN L + + + +I + A G + +R Sbjct: 363 TIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEALTREAMGFSEKR 418 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 GD++ + + F + + G + ++ A +L+ L+ L A+R Sbjct: 419 GDSLNVVNSPF-NSSDESGGALPFWQQQAFIDQ---LLAAGRWLLVLLVAWLLWRKAVRP 474 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 A+ + + L+ + AV L ++ + +NQ R+ + Sbjct: 475 QLTRR-AEAVKTVQQQALAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAE 522 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 V Q R+ M + + A ++R+W ++ E Sbjct: 523 VMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|281179000|dbj|BAI55330.1| flagellar hook-basal body MS ring protein FliF [Escherichia coli SE15] Length = 552 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 139/568 (24%), Positives = 249/568 (43%), Gaps = 51/568 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + LI+A V +M+ A + +P Y L+ L D I L++ Sbjct: 13 WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 71 NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247 AI HLV++AV L G+VT++D G LLT +N R++ L ++ I+ I Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303 L+ +G N + V A+L+ +++ E Y P+ RS +L ++++S + P Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307 Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347 N P ++ S + ++ E SNYE++ T Sbjct: 308 GVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 + ++RLS+AVVVN L + + + +I + A G + +RGD++ Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEALTREAMGFSEKRGDSLN 423 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + + F + + G + ++ A +L+ L+ L A+R Sbjct: 424 VVNSPF-NSSDESGGALPFWQQQAFIDQ---LLAAGRWLLVLLVAWLLWRKAVRPQLTRR 479 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 A+ + + L+ + AV L ++ + +NQ R+ + V Q Sbjct: 480 -AEAVKTVQQQALAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526 Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|51596039|ref|YP_070230.1| flagellar MS-ring protein [Yersinia pseudotuberculosis IP 32953] gi|51589321|emb|CAH20942.1| flagellar M-ring protein [Yersinia pseudotuberculosis IP 32953] Length = 570 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 130/550 (23%), Positives = 235/550 (42%), Gaps = 61/550 (11%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 + SP Y LY L D I L++ NI +R +DNG ++ +P+ V + R+ LA Sbjct: 45 MLWAKSPDYRVLYSNLSDRDGGDIVTQLTQLNIPYRFADNGGALLIPAEKVHETRLRLAQ 104 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 QGLP + G+EL D+ FG++ F ++I RALEGE++RTI ++ ++ RVH+ MP Sbjct: 105 QGLPKGGA-VGFELLDQE-KFGISQFSEQINYQRALEGELSRTIGTLGPVLNVRVHLAMP 162 Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + PTASV + AI ++V+++V L G+VTV+D TG+LL Sbjct: 163 KPSLFVREQKSPTASVTLALQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLL 222 Query: 218 TANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 T ++ R++ L +++ + I LA +G N + V A+++ +++ + Sbjct: 223 TQSDSAGRDLNASQLKFTSEVENRYQRRIENILAPMVGNGNVHAQVTAQVDFASREQTDE 282 Query: 277 VYDP----DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV---PLP------ 323 Y P + RS ++S Q T+ N P V+ P P Sbjct: 283 EYKPNQAANQGAVRSQQVSTSEQLGGTNV-GGVPGALSNQPPVAPIAPIEIPQPAGAAAN 341 Query: 324 --------------------RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 ++ + + ++ +N+E++ T ++RLS+AVVV Sbjct: 342 NAAPANAATTANANTTATAAKASSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVV 401 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 N LA++ + A G ++ RGDT+ + + F + + Sbjct: 402 NYTSDKAGK----PIALSKDQLAQVESLTREAMGFSTVRGDTLNVVNTPFTASDDTRGSS 457 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 + F ++NA +L+ L+ L LR + + S+ + Sbjct: 458 LPFWQQQSF---FDQLLNAGRYLLILLVAWILWRKLLRPMLAKKQV--ADKAAASVNNIV 512 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 + A T + +AL N Q R+++ V Q R+ + + + A Sbjct: 513 QTAQAAETVKQSKEELALRKKN----------QQRVSAEVQAQ---RIRELADKDPRVVA 559 Query: 544 KILRKWARSE 553 ++R+W ++ Sbjct: 560 LVIRQWMSND 569 >gi|22126359|ref|NP_669782.1| flagellar MS-ring protein [Yersinia pestis KIM 10] gi|45441380|ref|NP_992919.1| flagellar MS-ring protein [Yersinia pestis biovar Microtus str. 91001] gi|108807202|ref|YP_651118.1| flagellar MS-ring protein [Yersinia pestis Antiqua] gi|108812454|ref|YP_648221.1| flagellar MS-ring protein [Yersinia pestis Nepal516] gi|145598582|ref|YP_001162658.1| flagellar MS-ring protein [Yersinia pestis Pestoides F] gi|149366222|ref|ZP_01888257.1| flagellar M-ring protein [Yersinia pestis CA88-4125] gi|153947408|ref|YP_001401259.1| flagellar MS-ring protein [Yersinia pseudotuberculosis IP 31758] gi|162421303|ref|YP_001606485.1| flagellar MS-ring protein [Yersinia pestis Angola] gi|165926013|ref|ZP_02221845.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis str. F1991016] gi|165938662|ref|ZP_02227217.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis str. IP275] gi|166010885|ref|ZP_02231783.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str. E1979001] gi|166210437|ref|ZP_02236472.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str. B42003004] gi|167401031|ref|ZP_02306534.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420343|ref|ZP_02312096.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425776|ref|ZP_02317529.1| flagellar M-ring protein FliF [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468921|ref|ZP_02333625.1| flagellar M-ring protein FliF [Yersinia pestis FV-1] gi|218928951|ref|YP_002346826.1| flagellar MS-ring protein [Yersinia pestis CO92] gi|229897213|ref|ZP_04512369.1| flagellar M-ring protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229897940|ref|ZP_04513091.1| flagellar M-ring protein [Yersinia pestis biovar Orientalis str. India 195] gi|229902829|ref|ZP_04517946.1| flagellar M-ring protein [Yersinia pestis Nepal516] gi|270486615|ref|ZP_06203689.1| flagellar M-ring protein FliF [Yersinia pestis KIM D27] gi|294504003|ref|YP_003568065.1| flagellar M-ring protein [Yersinia pestis Z176003] gi|21959343|gb|AAM86033.1|AE013851_5 basal-body MS (membrane and supramembrane)-ring and collar protein [Yersinia pestis KIM 10] gi|45436240|gb|AAS61796.1| flagellar M-ring protein [Yersinia pestis biovar Microtus str. 91001] gi|108776102|gb|ABG18621.1| flagellar M-ring protein [Yersinia pestis Nepal516] gi|108779115|gb|ABG13173.1| flagellar M-ring protein [Yersinia pestis Antiqua] gi|115347562|emb|CAL20471.1| flagellar M-ring protein [Yersinia pestis CO92] gi|145210278|gb|ABP39685.1| flagellar M-ring protein [Yersinia pestis Pestoides F] gi|149292635|gb|EDM42709.1| flagellar M-ring protein [Yersinia pestis CA88-4125] gi|152958903|gb|ABS46364.1| flagellar M-ring protein FliF [Yersinia pseudotuberculosis IP 31758] gi|162354118|gb|ABX88066.1| flagellar M-ring protein FliF [Yersinia pestis Angola] gi|165913276|gb|EDR31898.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis str. IP275] gi|165922217|gb|EDR39394.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis str. F1991016] gi|165990229|gb|EDR42530.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str. E1979001] gi|166207617|gb|EDR52097.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str. B42003004] gi|166962038|gb|EDR58059.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049420|gb|EDR60828.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055175|gb|EDR64972.1| flagellar M-ring protein FliF [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229680276|gb|EEO76375.1| flagellar M-ring protein [Yersinia pestis Nepal516] gi|229688981|gb|EEO81046.1| flagellar M-ring protein [Yersinia pestis biovar Orientalis str. India 195] gi|229693550|gb|EEO83599.1| flagellar M-ring protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|262361812|gb|ACY58533.1| flagellar M-ring protein [Yersinia pestis D106004] gi|270335119|gb|EFA45896.1| flagellar M-ring protein FliF [Yersinia pestis KIM D27] gi|294354462|gb|ADE64803.1| flagellar M-ring protein [Yersinia pestis Z176003] gi|320015431|gb|ADV99002.1| flagellar M-ring protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 570 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 130/550 (23%), Positives = 235/550 (42%), Gaps = 61/550 (11%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 + SP Y LY L D I L++ NI +R +DNG ++ +P+ V + R+ LA Sbjct: 45 MLWAKSPDYRVLYSNLSDRDGGDIVTQLTQLNIPYRFADNGGALLIPAEKVHETRLRLAQ 104 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 QGLP + G+EL D+ FG++ F ++I RALEGE++RTI ++ ++ RVH+ MP Sbjct: 105 QGLPKGGA-VGFELLDQE-KFGISQFSEQINYQRALEGELSRTIGTLGPVLNVRVHLAMP 162 Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + PTASV + AI ++V+++V L G+VTV+D TG+LL Sbjct: 163 KPSLFVREQKSPTASVTLALQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLL 222 Query: 218 TANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 T ++ R++ L +++ + I LA +G N + V A+++ +++ + Sbjct: 223 TQSDSAGRDLNASQLKFTSEVENRYQRRIENILAPMVGNGNVHAQVTAQVDFASREQTDE 282 Query: 277 VYDP----DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV---PLP------ 323 Y P + RS ++S Q T+ N P V+ P P Sbjct: 283 EYKPNQAANQGAVRSQQVSTSEQLGGTNV-GGVPGALSNQPPVAPIAPIEIPQPAGAAAN 341 Query: 324 --------------------RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 ++ + + ++ +N+E++ T ++RLS+AVVV Sbjct: 342 NAAPANTAATANANTTATAAKASSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVV 401 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 N LA++ + A G ++ RGDT+ + + F + + Sbjct: 402 NYTSDKAGK----PIALSKDQLAQVESLTREAMGFSTVRGDTLNVVNTPFTASDDTRGSS 457 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 + F ++NA +L+ L+ L LR + + S+ + Sbjct: 458 LPFWQQQSF---FDQLLNAGRYLLILLVAWILWRKLLRPMLAKKQV--ADKAAASVNNIV 512 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 + A T + +AL N Q R+++ V Q R+ + + + A Sbjct: 513 QTAQAAETVKQSKEELALRKKN----------QQRVSAEVQAQ---RIRELADKDPRVVA 559 Query: 544 KILRKWARSE 553 ++R+W ++ Sbjct: 560 LVIRQWMSND 569 >gi|300920157|ref|ZP_07136607.1| flagellar M-ring protein FliF [Escherichia coli MS 115-1] gi|300412814|gb|EFJ96124.1| flagellar M-ring protein FliF [Escherichia coli MS 115-1] Length = 552 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 138/568 (24%), Positives = 250/568 (44%), Gaps = 51/568 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + LI+A V +M+ A + +P Y L+ L D I L++ Sbjct: 13 WLNRLHANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 71 NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247 AI HLV++AV L G+VT++D G LLT +N R++ L ++ I+ I Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303 L+ +G N + V A+L+ +++ E Y P+ RS +L ++++S + P Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307 Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347 N P ++ S + ++ E SNYE++ T Sbjct: 308 GVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 + ++RLS+AVVVN L + + + +I + A G + +RGD++ Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLN 423 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + + F + + ++ F + ++ A +L+ L+ L A+R Sbjct: 424 VVNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTSR 479 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 A+ + + + + AV L ++ + +NQ R+ + V Q Sbjct: 480 -AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526 Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|170019729|ref|YP_001724683.1| flagellar MS-ring protein [Escherichia coli ATCC 8739] gi|188492347|ref|ZP_02999617.1| flagellar M-ring protein FliF [Escherichia coli 53638] gi|300951563|ref|ZP_07165396.1| flagellar M-ring protein FliF [Escherichia coli MS 116-1] gi|300956546|ref|ZP_07168828.1| flagellar M-ring protein FliF [Escherichia coli MS 175-1] gi|169754657|gb|ACA77356.1| flagellar M-ring protein FliF [Escherichia coli ATCC 8739] gi|188487546|gb|EDU62649.1| flagellar M-ring protein FliF [Escherichia coli 53638] gi|300316646|gb|EFJ66430.1| flagellar M-ring protein FliF [Escherichia coli MS 175-1] gi|300449190|gb|EFK12810.1| flagellar M-ring protein FliF [Escherichia coli MS 116-1] gi|332093105|gb|EGI98169.1| flagellar M-ring protein FliF [Shigella boydii 5216-82] Length = 552 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 138/568 (24%), Positives = 249/568 (43%), Gaps = 51/568 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + LI+A V +M+ A + +P Y L+ L D I L++ Sbjct: 13 WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 71 NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQAIQHEIEMNINK 247 AI HLV++AV L G+VT++D G LLT N R++ L ++ I+ I Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQFNTSGRDLNDAQLKYASDVEGRIQRRIEA 248 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303 L+ +G N + V A+L+ +++ E Y P+ RS +L ++++S + P Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307 Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347 N P ++ S + ++ E SNYE++ T Sbjct: 308 GVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 + ++RLS+AVVVN L + + + +I + A G + +RGD++ Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLN 423 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + + F + + ++ F + ++ A +L+ L+ L A+R Sbjct: 424 VVNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRR 479 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 A+ + + + + AV L ++ + +NQ R+ + V Q Sbjct: 480 -AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526 Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|82543597|ref|YP_407544.1| flagellar MS-ring protein [Shigella boydii Sb227] gi|81245008|gb|ABB65716.1| FliF [Shigella boydii Sb227] gi|320186947|gb|EFW61661.1| Flagellar M-ring protein FliF [Shigella flexneri CDC 796-83] gi|332096898|gb|EGJ01887.1| flagellar M-ring protein FliF [Shigella boydii 3594-74] Length = 552 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 138/568 (24%), Positives = 250/568 (44%), Gaps = 51/568 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + LI+A V +M+ A + +P Y L+ L D I L++ Sbjct: 13 WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 71 NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247 AI HLV++AV L G+VT++D G LLT +N R++ L ++ I+ I Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTLSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303 L+ +G N + V A+L+ +++ E Y P+ RS +L ++++S + P Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307 Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347 N P ++ S + ++ E SNYE++ T Sbjct: 308 GVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 + ++RLS+AVVVN L + + + +I + A G + +RGD++ Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLN 423 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + + F + + ++ F + ++ A +L+ L+ L A+R Sbjct: 424 VVNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTSR 479 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 A+ + + + + AV L ++ + +NQ R+ + V Q Sbjct: 480 -AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526 Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|238788332|ref|ZP_04632126.1| Flagellar M-ring protein [Yersinia frederiksenii ATCC 33641] gi|238723578|gb|EEQ15224.1| Flagellar M-ring protein [Yersinia frederiksenii ATCC 33641] Length = 569 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 126/548 (22%), Positives = 230/548 (41%), Gaps = 58/548 (10%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 + SP Y LY L D I L++ NI +R +D+G ++ +P+ V + R+ LA Sbjct: 45 MLWAKSPDYRVLYSNLSDRDGGDIVTQLTQLNIPYRFADHGGALLIPADKVHETRLRLAQ 104 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 QGLP + G+EL D+ FG++ F +++ RALEGE+ARTI ++ ++ RVH+ MP Sbjct: 105 QGLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIGTLGPVLNVRVHLAMP 162 Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + PTASV + AI ++V+++V L +VTV+D TG+LL Sbjct: 163 KPSLFVREQKSPTASVTLALQPGRALDDGQINAIVYMVSSSVAGLPPANVTVVDQTGRLL 222 Query: 218 TANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 T ++ R++ L +++ + I LA +G N + V A+++ +++ + Sbjct: 223 TQSDSAGRDLNAAQLKFTNEVENRFQRRIETILAPMVGSGNVHAQVTAQVDFASREQTDE 282 Query: 277 VYDPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSD---------------- 317 Y P+ + S+ SE S N P + Sbjct: 283 EYKPNQAANQGAVRSQQVSSSEQLGGSNVGGVPGALSNQPSATPVAPIEVPQPAAAPGAT 342 Query: 318 ------------RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365 + + + ++ +N+E++ T ++RLS+AVVVN Sbjct: 343 GAAANNANAANSPATTRSTATSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVNY 402 Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425 G LA++ + A G ++ RGDT+ + + F + + Sbjct: 403 GSDKAGK----PIALTKDQLAQVESLTREAMGFSTDRGDTLNVVNTPFNATDNASGNALP 458 Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485 F ++NA +L+ L+ L +R L I + + S+ + Sbjct: 459 FWQQPSF---FDQLLNAGRYLLILLVAWILWRKLVRPL--IAKKQIADKAAASVNNIVQT 513 Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545 + A T + +AL N Q R+++ V Q R+ + + + A + Sbjct: 514 AQATETAKQSKEELALRKKN----------QQRVSAEVQAQ---RIRELADKDPRVVALV 560 Query: 546 LRKWARSE 553 +R+W ++ Sbjct: 561 IRQWMSND 568 >gi|186895144|ref|YP_001872256.1| flagellar MS-ring protein [Yersinia pseudotuberculosis PB1/+] gi|186698170|gb|ACC88799.1| flagellar M-ring protein FliF [Yersinia pseudotuberculosis PB1/+] Length = 570 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 130/550 (23%), Positives = 235/550 (42%), Gaps = 61/550 (11%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 + SP Y LY L D I L++ NI +R +DNG ++ +P+ V + R+ LA Sbjct: 45 MLWAKSPDYRVLYSNLSDRDGGDIVTQLTQLNIPYRFADNGGALLIPAEKVHETRLRLAQ 104 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 QGLP + G+EL D+ FG++ F ++I RALEGE++RTI ++ ++ RVH+ MP Sbjct: 105 QGLPKGGA-VGFELLDQE-KFGISQFSEQINYQRALEGELSRTIGTLGPVLNVRVHLAMP 162 Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + PTASV + AI ++V+++V L G+VTV+D TG+LL Sbjct: 163 KPSLFVREQKSPTASVTLALQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLL 222 Query: 218 TANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 T ++ R++ L +++ + I LA +G N + V A+++ +++ + Sbjct: 223 TQSDSAGRDLNASQLKFTSEVENRYQRRIENILAPMVGNGNVHAQVTAQVDFASREQTDE 282 Query: 277 VYDP----DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV---PLP------ 323 Y P + RS ++S Q T+ N P V+ P P Sbjct: 283 EYKPNQAANQGAVRSQQVSTSEQLGGTNV-GGVPGALSNQPPVAPIAPIEIPQPAGAAAN 341 Query: 324 --------------------RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 ++ + + ++ +N+E++ T ++RLS+AVVV Sbjct: 342 NAAPANAATTANANTTATAAKASSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVV 401 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 N LA++ + A G ++ RGDT+ + + F + + Sbjct: 402 NYTSDKAGK----PIALSKDQLAQVESLTREAMGFSTVRGDTLNVVNTPFTASDDTRGSS 457 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 + F ++NA +L+ L+ L LR + + S+ + Sbjct: 458 LPFWQQQSF---FDQLLNAGRYLLILLVAWILWRKLLRPMLAKKQV--ADNAAASVNNIV 512 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 + A T + +AL N Q R+++ V Q R+ + + + A Sbjct: 513 QTAQAAETVKQSKEELALRKKN----------QQRVSAEVQAQ---RIRELADKDPRVVA 559 Query: 544 KILRKWARSE 553 ++R+W ++ Sbjct: 560 LVIRQWMSND 569 >gi|187926897|ref|YP_001893242.1| flagellar M-ring protein FliF [Ralstonia pickettii 12J] gi|241665226|ref|YP_002983585.1| flagellar M-ring protein FliF [Ralstonia pickettii 12D] gi|187728651|gb|ACD29815.1| flagellar M-ring protein FliF [Ralstonia pickettii 12J] gi|240867253|gb|ACS64913.1| flagellar M-ring protein FliF [Ralstonia pickettii 12D] Length = 611 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 128/553 (23%), Positives = 241/553 (43%), Gaps = 49/553 (8%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y L+ + +D I AL + N+ +R +D G++I VP + V + R+ LA+QG Sbjct: 67 WSRAPDYRVLFSNVSDADGGAIIAALQQMNVPYRFADGGTAIMVPEANVHETRLKLASQG 126 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP +G+EL + FG + F +++ RALEGE+ARTIQ++ + +ARVH+ + Sbjct: 127 LPKGGL-AGFELME-NQKFGTSQFAEQVNYQRALEGELARTIQAMQEVQSARVHLALSKP 184 Query: 162 GSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + A+P+ASV++ + +AI HLV+++VPNL + +VTV+D G+LL++ Sbjct: 185 SVFVREQAKPSASVLLTLYPGRMLDRSQVQAIGHLVSSSVPNLPLANVTVVDQAGRLLSS 244 Query: 220 N--EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 + + + L+ V+ I+ I L +G DN R+ V A++++D + Sbjct: 245 SFQDNASGLDPTQLNYVREIEQGYIKRIEAILGPVVGDDNVRAQVTADVDLDNTEQMAET 304 Query: 278 Y----DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDR--------------- 318 Y DP + RS ++ Q +Q N P + R Sbjct: 305 YRPNQDPSTAAVRSTHTAESTQNKADAQ-GGVPGALSNQPPTAPRMLPTAPAPASQPAAA 363 Query: 319 --KVPLPRSLE--------------NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 ++ + + ++ +NYE++ T + RLS+AVV Sbjct: 364 GPNGANGQAQQPAAANTNATTTNGATSSTRDTTTNYEVDKTVRRTRAAVGTVRRLSVAVV 423 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 VN + + D+ +A++N +V A G +++RGD++ + + F Sbjct: 424 VNYRADGK-----TWKPLSDAEMAKLNALVKDAVGFDAKRGDSVNVVNSQFSGTLPVPKD 478 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE--VGGKSIL 480 + + + ++ L +G L++ F + L R N DA VG + Sbjct: 479 DLPLWKQPEMIQYAIQAAKYLALAIGFLILVFAVIRPLIRSLNKKDAPATPTFVGREGED 538 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 PI + P S+ + ++ + + + + + N Sbjct: 539 PNAPIITGAAASAGPELEGPSSSAIGAGGEDVPDSLPQLKNADFEHKLETMRRVAQQNPR 598 Query: 541 RFAKILRKWARSE 553 A ++++W +E Sbjct: 599 AVAAVIKQWVSNE 611 >gi|205352337|ref|YP_002226138.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205272118|emb|CAR36971.1| flagellar basal-body M-ring protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326627387|gb|EGE33730.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 558 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 131/542 (24%), Positives = 232/542 (42%), Gaps = 54/542 (9%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R LA Q Sbjct: 44 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELR--LAQQ 101 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 102 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 159 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + A+ HLV++AV L G+VT++D +G LLT Sbjct: 160 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 219 Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 +N R++ L ++ I+ I L+ +G N + V A+L+ + E Sbjct: 220 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKDQTEEH 279 Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------------HVSDRKV 320 Y P+ ++ S+ SE P N P + + Sbjct: 280 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 339 Query: 321 PLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373 P + N++ + E SNYE++ T + +ERLS+AVVVN L + Sbjct: 340 PQTSTSTNSNSAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP 399 Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433 + +I + A G + +RGDT+ + + F ++ ++ F S Sbjct: 400 L----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDNTGGELPFWQQQS 452 Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493 ++ A +L+ ++ L A+R ++ + + AV L Sbjct: 453 -FIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRL 510 Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ + +NQ R+ + V Q R+ M + + A ++R+W ++ Sbjct: 511 SKDEQLQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 556 Query: 554 IE 555 E Sbjct: 557 HE 558 >gi|238784726|ref|ZP_04628730.1| Flagellar M-ring protein [Yersinia bercovieri ATCC 43970] gi|238714405|gb|EEQ06413.1| Flagellar M-ring protein [Yersinia bercovieri ATCC 43970] Length = 572 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 131/551 (23%), Positives = 235/551 (42%), Gaps = 61/551 (11%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 + SP Y LY L D I L++ NI +R +DNG ++ +P+ V + R+ LA Sbjct: 45 MLWAKSPDYRVLYSNLSDRDGGEIVTQLTQLNIPYRFADNGGALLIPADKVHETRLRLAQ 104 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 QGLP + G+EL D+ FG++ F ++I RALEGE+ARTI ++ ++ RVH+ MP Sbjct: 105 QGLPKGGA-VGFELLDQE-KFGISQFSEQINYQRALEGELARTIGTLGPVLNVRVHLAMP 162 Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + PTASV + AI ++V+++V L G+VTV+D TG+LL Sbjct: 163 KPSLFVREQKSPTASVTLALQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLL 222 Query: 218 TANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 T ++ R++ L +++ + I LA +G N + V A+++ +++ + Sbjct: 223 TQSDSAGRDLNAAQLKFTNEVENRFQRRIETILAPMVGSGNVHAQVTAQVDFASREQTDE 282 Query: 277 VYDPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMP---HVSDRKVPLPRSL---- 326 Y P+ + S+ SE S N P V+ +VP P + Sbjct: 283 EYKPNQAANQGAVRSQQTSNSEQLGGSNVGGVPGALSNQPSATPVAPIEVPQPAPVAGAA 342 Query: 327 ------------------------ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 + + ++ +N+E++ T ++RLS+AVV Sbjct: 343 GAAANNANAANRPATTTAARSTATSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVV 402 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 VN G LA++ + A G ++ RGDT+ + + F + Sbjct: 403 VNYGSDKAGK----PVALSKDQLAQVESLTREAMGFSTDRGDTLNVVNTPFNATDDGSGL 458 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482 ++ F ++N +L+ L+ L +R + I + + S+ S Sbjct: 459 SLPFWKQQSF---FDQLLNGGRYLLILLVAWILWRKLVRPM--IAKKQLADKAAASVNSM 513 Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542 + T + +AL N Q R+++ V Q R+ + + + Sbjct: 514 VQTAQTAETVKQSKEELALRKKN----------QQRVSAEVQAQ---RIRELADKDPRIV 560 Query: 543 AKILRKWARSE 553 A ++R+W ++ Sbjct: 561 ALVIRQWMSND 571 >gi|194439576|ref|ZP_03071649.1| flagellar M-ring protein FliF [Escherichia coli 101-1] gi|194421485|gb|EDX37499.1| flagellar M-ring protein FliF [Escherichia coli 101-1] gi|323972762|gb|EGB67962.1| flagellar M-ring protein FliF [Escherichia coli TA007] Length = 552 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 135/573 (23%), Positives = 253/573 (44%), Gaps = 52/573 (9%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 + L++ + + +++ S + + +A + +P Y L+ L D I Sbjct: 9 KSLEWLNRLHANPKIPLIVTGS---AAVAVMVALILWAKTPDYRTLFSNLSDQDGGAIVS 65 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F Sbjct: 66 QLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQF 123 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 124 SEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRAL 183 Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIE 242 AI HLV++AV L G+VT++D G LLT +N R++ L ++ I+ Sbjct: 184 DEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQ 243 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSE 298 I L+ +G N + V A+L+ +++ E Y P+ RS +L ++++S Sbjct: 244 RRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSG 302 Query: 299 TSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINT 342 + P N P ++ S + ++ E SNYE++ Sbjct: 303 SGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDR 362 Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402 T + ++RLS+AVVVN L + + + +I + A G + +R Sbjct: 363 TIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKR 418 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 GD++ + + F + + ++ F + ++ A +L+ L+ L A+R Sbjct: 419 GDSLNVVNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRP 474 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 A+ + + + + AV L ++ + +NQ R+ + Sbjct: 475 QLTRR-AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAE 522 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 V Q R+ M + + A ++R+W ++ E Sbjct: 523 VMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|238764898|ref|ZP_04625838.1| Flagellar M-ring protein [Yersinia kristensenii ATCC 33638] gi|238696917|gb|EEP89694.1| Flagellar M-ring protein [Yersinia kristensenii ATCC 33638] Length = 572 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 130/552 (23%), Positives = 233/552 (42%), Gaps = 63/552 (11%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 + SP Y LY L D I L++ NI +R +DNG ++ +P+ V + R+ LA Sbjct: 45 MLWAKSPDYRVLYSNLSDRDGGDIVTQLTQLNIPYRFADNGGALLIPADKVHETRLRLAQ 104 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 QGLP + G+EL D+ FG++ F +++ RALEGE+ARTI ++ ++ RVH+ MP Sbjct: 105 QGLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTISTLGPVLNVRVHLAMP 162 Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + PTASV + AI ++V+++V L VTV+D TG+LL Sbjct: 163 KPSLFVREQKSPTASVTLALQPGRALDDGQINAIVYMVSSSVAGLPPASVTVVDQTGRLL 222 Query: 218 TANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 T ++ R++ L +++ + I LA +G N + V A+++ +++ + Sbjct: 223 TQSDSAGRDLNAAQLKFTNEVENRFQRRIETILAPMVGSGNIHAQVTAQVDFSSREQTDE 282 Query: 277 VYDP----DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV------------ 320 Y P + RS ++S Q T+ N P V+ Sbjct: 283 EYKPNQAANQGAVRSQQVSTSEQLGGTNV-GGVPGALSNQPPVTPVAPIEVPPATPAAGA 341 Query: 321 -------------------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 + + + ++ +N+E++ T ++RLS+AV Sbjct: 342 GAPANTANAANRPAATTTAARQTATSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAV 401 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 VVN G T+ G+ LA++ + A G ++ RGDT+ + + F Sbjct: 402 VVNYG--TDKAGKPI--ALSKEQLAQVESLTREAMGFSTDRGDTLNVVNTPFSATGDDTG 457 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 ++ F +IN +L+ L+ L +R L + S+ + Sbjct: 458 SSLPFWQQQSF---FDQLINIGRYLLILLVAWILWRKLVRPLMEKKQV--ADKATASVNT 512 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 + A T + +AL N Q R+++ V Q R+ + + + Sbjct: 513 LVQTAQASETAKQTKEELALRKKN----------QQRVSAEVQAQ---RIRELADKDPRV 559 Query: 542 FAKILRKWARSE 553 A ++R+W ++ Sbjct: 560 VALVIRQWMSND 571 >gi|325920574|ref|ZP_08182496.1| flagellar basal-body M-ring protein/flagellar hook-basal body protein FliF [Xanthomonas gardneri ATCC 19865] gi|325548967|gb|EGD19899.1| flagellar basal-body M-ring protein/flagellar hook-basal body protein FliF [Xanthomonas gardneri ATCC 19865] Length = 576 Score = 418 bits (1075), Expect = e-114, Method: Composition-based stats. Identities = 115/570 (20%), Positives = 236/570 (41%), Gaps = 30/570 (5%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ Q+F SL TR L + ++I + + +A ++ P Y +LY L+ + Sbjct: 15 EKAGQWFDRVRSLQITRKLTMMAMIALAVGAGLAVFYWSQKPGYQSLYTGLDDKGNAEAA 74 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L A I ++I N +ISVP + AR+ LA GL + G+EL +K FG++ Sbjct: 75 DLLRTAQIPYKIDQNTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQ 134 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 F++ ALE E++RTI ++ + ARVH+ +P +F + +ASV++ Sbjct: 135 FVENARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQG 194 Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240 + +AI +LVA+++P++ VTV+D +G++L+ + + V+ + Sbjct: 195 LERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESS 254 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I + L G V +++ + +Y+ + RS +++ + + Sbjct: 255 YNQRIRELLEPMTGAGRVNPEVSVDMDFSVVEEARELYNGEPAKLRSEQINDTSTSATGP 314 Query: 301 QPESAVTVEQ---------------NMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSI 345 Q T + + K NYE++ Sbjct: 315 QGPPGATSNSPGQPPAPAANATAGAPGAPAAANGQAAAPAAPTESSKSATRNYELDRTLQ 374 Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 T +++R+S+AV+++ G+ +Q + L I +V A G ++ RGDT Sbjct: 375 HTRQPAGRIKRVSVAVLLDNVPRPGAKGKIVEQPLTAAELTRIEGLVKQAVGFDAARGDT 434 Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLH 464 +++ + F+ + + + ++ A V L + F + LR+L Sbjct: 435 VSVMNAPFVREAVAGEEGPKWWEDPRVQNGLRLLVGA----VVVLALLFGVVRPTLRQLT 490 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 + K + G +P M +D+ + +D ++ + I + Sbjct: 491 GVTVVKDKQGKGGKDGTPQSADVR-----MVDDDDLMPRLEEDTAQLGQDKKVPIALPDA 545 Query: 525 KQSDLRL-LHMIEINEERFAKILRKWARSE 553 + +R+ ++ + +R A++++ W SE Sbjct: 546 YEERMRVAREAVKADSKRVAQVVKGWVASE 575 >gi|331647532|ref|ZP_08348624.1| flagellar M-ring protein FliF [Escherichia coli M605] gi|330911744|gb|EGH40254.1| flagellar M-ring protein FliF [Escherichia coli AA86] gi|331043256|gb|EGI15394.1| flagellar M-ring protein FliF [Escherichia coli M605] Length = 552 Score = 418 bits (1075), Expect = e-114, Method: Composition-based stats. Identities = 139/568 (24%), Positives = 249/568 (43%), Gaps = 51/568 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + LI+A V +M+ A + +P Y L+ L D I L++ Sbjct: 13 WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRILFSNLSDQDGGAIVSQLTQM 70 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 71 NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247 AI HLV++AV L G+VT++D G LLT +N R++ L ++ I+ I Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303 L+ +G N + V A+L+ +++ E Y P+ RS +L ++++S + P Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307 Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347 N P ++ S + ++ E SNYE++ T Sbjct: 308 GVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 + ++RLS+AVVVN L + + + +I + A G + +RGD++ Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEALTREAMGFSEKRGDSLN 423 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + + F + + G + ++ A +L+ L+ L A+R Sbjct: 424 VVNSPF-NSSDESGGALPFWQQQAFIDQ---LLAAGRWLLVLLVAWLLWRKAVRPQLTRR 479 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 A+ + + L+ + AV L ++ + +NQ R+ + V Q Sbjct: 480 -AEAVKTVQQQALAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526 Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|218705431|ref|YP_002412950.1| flagellar MS-ring protein [Escherichia coli UMN026] gi|293405421|ref|ZP_06649413.1| fliF [Escherichia coli FVEC1412] gi|298381064|ref|ZP_06990663.1| flagellar M-ring protein [Escherichia coli FVEC1302] gi|218432528|emb|CAR13421.1| flagellar basal-body MS-ring and collar protein [Escherichia coli UMN026] gi|291427629|gb|EFF00656.1| fliF [Escherichia coli FVEC1412] gi|298278506|gb|EFI20020.1| flagellar M-ring protein [Escherichia coli FVEC1302] Length = 552 Score = 418 bits (1075), Expect = e-114, Method: Composition-based stats. Identities = 138/568 (24%), Positives = 250/568 (44%), Gaps = 51/568 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + LI+A V +M+ A + +P Y L+ L D I L++ Sbjct: 13 WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 71 NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247 AI HLV++AV L G+VT++D G LLT +N R++ L ++ I+ I Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303 L+ +G N + V A+L+ +++ E Y P+ RS +L ++++S + P Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307 Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347 N P ++ S + ++ E SNYE++ T Sbjct: 308 GVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 + ++RLS+AVVVN L + + + +I + A G + +RGD++ Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLN 423 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + + F + + ++ F + ++ A +L+ L+ L A+R Sbjct: 424 VVNSPFNSS---DESGGELPFWQQQA-FIDQLMAAGRWLLVLLVAWLLWRKAVRPQLTRR 479 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 A+ + + + + AV L ++ + +NQ R+ + V Q Sbjct: 480 -AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526 Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|16129885|ref|NP_416448.1| flagellar basal-body MS-ring and collar protein [Escherichia coli str. K-12 substr. MG1655] gi|89108770|ref|AP_002550.1| flagellar basal-body MS-ring and collar protein [Escherichia coli str. K-12 substr. W3110] gi|157161409|ref|YP_001458727.1| flagellar MS-ring protein [Escherichia coli HS] gi|170081582|ref|YP_001730902.1| flagellar basal-body MS-ring and collar protein [Escherichia coli str. K-12 substr. DH10B] gi|170682432|ref|YP_001743307.1| flagellar MS-ring protein [Escherichia coli SMS-3-5] gi|193071157|ref|ZP_03052081.1| flagellar M-ring protein FliF [Escherichia coli E110019] gi|218554518|ref|YP_002387431.1| flagellar MS-ring protein [Escherichia coli IAI1] gi|238901143|ref|YP_002926939.1| flagellar basal-body MS-ring and collar protein [Escherichia coli BW2952] gi|253773113|ref|YP_003035944.1| flagellar MS-ring protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|260855913|ref|YP_003229804.1| flagellar basal-body MS-ring and collar protein FliF [Escherichia coli O26:H11 str. 11368] gi|300822292|ref|ZP_07102433.1| flagellar M-ring protein FliF [Escherichia coli MS 119-7] gi|301018212|ref|ZP_07182727.1| flagellar M-ring protein FliF [Escherichia coli MS 69-1] gi|331663434|ref|ZP_08364344.1| flagellar M-ring protein FliF [Escherichia coli TA143] gi|331668629|ref|ZP_08369477.1| flagellar M-ring protein FliF [Escherichia coli TA271] gi|2506421|sp|P25798|FLIF_ECOLI RecName: Full=Flagellar M-ring protein gi|1736604|dbj|BAA15763.1| flagellar basal-body MS-ring and collar protein [Escherichia coli str. K12 substr. W3110] gi|1788248|gb|AAC75005.1| flagellar basal-body MS-ring and collar protein [Escherichia coli str. K-12 substr. MG1655] gi|157067089|gb|ABV06344.1| flagellar M-ring protein FliF [Escherichia coli HS] gi|169889417|gb|ACB03124.1| flagellar basal-body MS-ring and collar protein [Escherichia coli str. K-12 substr. DH10B] gi|170520150|gb|ACB18328.1| flagellar M-ring protein FliF [Escherichia coli SMS-3-5] gi|192955552|gb|EDV86031.1| flagellar M-ring protein FliF [Escherichia coli E110019] gi|218361286|emb|CAQ98870.1| flagellar basal-body MS-ring and collar protein [Escherichia coli IAI1] gi|238861094|gb|ACR63092.1| flagellar basal-body MS-ring and collar protein [Escherichia coli BW2952] gi|253324157|gb|ACT28759.1| flagellar M-ring protein FliF [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|257754562|dbj|BAI26064.1| flagellar basal-body MS-ring and collar protein FliF [Escherichia coli O26:H11 str. 11368] gi|260448949|gb|ACX39371.1| flagellar M-ring protein FliF [Escherichia coli DH1] gi|284921846|emb|CBG34921.1| flagellar M-ring protein [Escherichia coli 042] gi|300399799|gb|EFJ83337.1| flagellar M-ring protein FliF [Escherichia coli MS 69-1] gi|300525175|gb|EFK46244.1| flagellar M-ring protein FliF [Escherichia coli MS 119-7] gi|309702227|emb|CBJ01544.1| flagellar M-ring protein [Escherichia coli ETEC H10407] gi|315136575|dbj|BAJ43734.1| flagellar MS-ring protein [Escherichia coli DH1] gi|323152731|gb|EFZ39003.1| flagellar M-ring protein FliF [Escherichia coli EPECa14] gi|323937208|gb|EGB33488.1| flagellar M-ring protein FliF [Escherichia coli E1520] gi|324118987|gb|EGC12876.1| flagellar M-ring protein FliF [Escherichia coli E1167] gi|331059233|gb|EGI31210.1| flagellar M-ring protein FliF [Escherichia coli TA143] gi|331063823|gb|EGI35734.1| flagellar M-ring protein FliF [Escherichia coli TA271] Length = 552 Score = 418 bits (1075), Expect = e-114, Method: Composition-based stats. Identities = 138/568 (24%), Positives = 250/568 (44%), Gaps = 51/568 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + LI+A V +M+ A + +P Y L+ L D I L++ Sbjct: 13 WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 71 NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247 AI HLV++AV L G+VT++D G LLT +N R++ L ++ I+ I Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303 L+ +G N + V A+L+ +++ E Y P+ RS +L ++++S + P Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307 Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347 N P ++ S + ++ E SNYE++ T Sbjct: 308 GVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 + ++RLS+AVVVN L + + + +I + A G + +RGD++ Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLN 423 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + + F + + ++ F + ++ A +L+ L+ L A+R Sbjct: 424 VVNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRR 479 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 A+ + + + + AV L ++ + +NQ R+ + V Q Sbjct: 480 -AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526 Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|332343664|gb|AEE56998.1| flagellar M-ring protein FliF [Escherichia coli UMNK88] Length = 552 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 135/573 (23%), Positives = 253/573 (44%), Gaps = 52/573 (9%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 + L++ + + +++ S + + +A + +P Y L+ L D I Sbjct: 9 KSLEWLNRLRANPKIPLIVTGS---AAVAVMVALILWAKTPDYRTLFSNLSDQDGGAIVS 65 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F Sbjct: 66 QLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQF 123 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 124 SEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRAL 183 Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIE 242 AI HLV++AV L G+VT++D G LLT +N R++ L ++ I+ Sbjct: 184 DEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQ 243 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSE 298 I L+ +G N + V A+L+ +++ E Y P+ RS +L ++++S Sbjct: 244 RRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSG 302 Query: 299 TSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINT 342 + P N P ++ S + ++ E SNYE++ Sbjct: 303 SGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDR 362 Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402 T + ++RLS+AVVVN L + + + +I + A G + +R Sbjct: 363 TIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKR 418 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 GD++ + + F + + ++ F + ++ A +L+ L+ L A+R Sbjct: 419 GDSLNVVNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRP 474 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 A+ + + + + AV L ++ + +NQ R+ + Sbjct: 475 QLTRR-AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAE 522 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 V Q R+ M + + A ++R+W ++ E Sbjct: 523 VMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|83747628|ref|ZP_00944664.1| FliF [Ralstonia solanacearum UW551] gi|207739709|ref|YP_002258102.1| flagellar m-ring protein [Ralstonia solanacearum IPO1609] gi|83725680|gb|EAP72822.1| FliF [Ralstonia solanacearum UW551] gi|206593091|emb|CAQ59997.1| flagellar m-ring protein [Ralstonia solanacearum IPO1609] Length = 611 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 137/555 (24%), Positives = 245/555 (44%), Gaps = 49/555 (8%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 + +P Y LY + SD I AL + N+ +R +D GS+I VP + V +AR+ LAA Sbjct: 65 TLWSRAPDYRVLYSNVADSDGGAIIAALQQMNVPYRFADGGSAIMVPEANVHEARLKLAA 124 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 QGLP +G+EL + FG + F +++ RALEGE+ARTIQ++ + +ARVH+ + Sbjct: 125 QGLPKGGL-AGFELME-NQKFGTSQFAEQVNYQRALEGELARTIQAMQEVQSARVHLALS 182 Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + A+P+ASV+++ + +AI HLV+++VPNL + +VTV+D +G+LL Sbjct: 183 KPSVFVREQAKPSASVLLKLYPGRMLDRSQVQAIGHLVSSSVPNLPLANVTVVDQSGRLL 242 Query: 218 TAN--EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 +++ + + L+ V+ I+ I L +G DN R+ V A++++D + Sbjct: 243 SSSFQDNASGLDPTQLNYVRDIEQGYIKRIEAILGPVVGEDNVRAQVTADVDLDNTEQMA 302 Query: 276 IVY----DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVP---------- 321 Y DP + V RS S+ Q +Q N P + R +P Sbjct: 303 ETYRPNQDPANGVVRSTHTSESTQNKAGAQ-GGVPGALSNQPPTAPRMLPTAPAPASQQA 361 Query: 322 ----LPRSLEN-----------------TDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 ++ N + ++ NYE++ T + RLS+A Sbjct: 362 AAGQNGQNAPNGQQQAAATGQAATNNVESSARDTTVNYEVDKTVRRTRAAVGIVRRLSVA 421 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 VVVN + + D+ + ++N +V A G +++RGD++ + + F + Sbjct: 422 VVVNYRADGK-----TWKPLSDADMVKLNALVKDAVGYDAKRGDSVNVVNSQFSGTLPTS 476 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD--AKKGEVGGKS 478 + + + + +G L++ F + L R N + A VG + Sbjct: 477 RDDLPLWKQPEMIHYAIQAAKYGALAIGFLILVFAVIRPLIRSMNKKEELATATFVGREG 536 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 PI + P +S D + L ++ +Q + + + N Sbjct: 537 DDPNAPIITGAAAPAGPGLEGPSSASAADGDAVPEELPQLKQNHEFEQKLETMRRIAQQN 596 Query: 539 EERFAKILRKWARSE 553 A ++++W E Sbjct: 597 PRAVAAVIKQWVSIE 611 >gi|83647861|ref|YP_436296.1| flagellar MS-ring protein [Hahella chejuensis KCTC 2396] gi|83635904|gb|ABC31871.1| flagellar M-ring protein FliF [Hahella chejuensis KCTC 2396] Length = 572 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 131/566 (23%), Positives = 243/566 (42%), Gaps = 27/566 (4%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +++ L R L+L + I + A + N P Y LY + V D Sbjct: 20 LVENRSDMMLGFNRLSLLRQLVLMVGVAASIAMGAAIILWANEPAYQPLYPDMSVYDSTE 79 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 +S LS+ NI F++ ++ V + V AR+ LAA G+ + GYEL DK G Sbjct: 80 VSDILSQNNIHFKVEPKSGALLVAAEDVSAARMRLAAAGV-TQDRTIGYELLDKDQGLGS 138 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 + FM+ R LEGE+ARTI S+ + ARVH+ +P F + RP+ASV++ Sbjct: 139 SQFMESTRYRRGLEGELARTISSLRNVKNARVHLAIPKQSVFVRDKRRPSASVLVELTGS 198 Query: 183 SV--YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQ 238 EAI +LVA +VP +D DVTV+D G LL+ N + + + + ++ Sbjct: 199 RSLHQDQVEAIVNLVAGSVPEMDHRDVTVVDQRGNLLSQNNLTEDDLRTSREFQYARRME 258 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR--------- 289 + +N L LG FR+ V A+++ + + ++PD + RS + Sbjct: 259 EVLTGRVNSILEPILGPGRFRAEVSADVDFTAVEQAQETFNPDPQAVRSEQEIGEQRIAG 318 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 ++ + ++QP V + S +K+ NYE++ T Sbjct: 319 SNQGVPGALSNQPPGVAAVPEQAGVAGAAANATANSQATDIRKQTVRNYEVDRTVSYTKQ 378 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 K++RL++AVVV+ R G + ++ L + +V A G ++ RGD++ + Sbjct: 379 HQGKVQRLTVAVVVDDLRRVGADGAVTTEAWPEAELQRLTVLVRDAVGYSAARGDSVNVI 438 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 + F+ ++ S + R +I V + L++ F + + + A Sbjct: 439 NTPFMAEEVEISDYEAPLWEQPWIRE---LIKWGVAFLIVLILVFGVIRPTFKNLSSGGA 495 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSH-SRNLQSRINSYVSKQSD 528 + ++ +G+ +++ L+++ + S + +IN+ Sbjct: 496 DAKNLALAGDEDGLAELESLGSGVGEGESVGLNAAGDFLLPGSSEGYEKKINA------- 548 Query: 529 LRLLHMIEINEERFAKILRKWARSEI 554 L +I + R A+++R+W ++ Sbjct: 549 --LKGLIAEDPGRVAQVVRQWVMADE 572 >gi|1772459|dbj|BAA14029.1| FliF [Escherichia coli W3110] Length = 552 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 139/568 (24%), Positives = 250/568 (44%), Gaps = 51/568 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + LI+A V +M+ A + +P Y L+ L D I L++ Sbjct: 13 WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 71 NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247 AI HLV++AV L G+VT++D G LLT +N R++ L ++ I+ I Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303 L+ +G N R+ V A L+ +++ E Y P+ RS +L ++++S + P Sbjct: 249 ILSPIVGNGNIRAQVTAHLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307 Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347 N P ++ S + ++ E SNYE++ T Sbjct: 308 GVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 + ++RLS+AVVVN L + + + +I + A G + +RGD++ Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLN 423 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + + F + + ++ F + ++ A +L+ L+ L A+R Sbjct: 424 VVNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRR 479 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 A+ + + + + AV L ++ + +NQ R+ + V Q Sbjct: 480 -AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526 Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|318605263|emb|CBY26761.1| flagellar M-ring protein FliF [Yersinia enterocolitica subsp. palearctica Y11] Length = 559 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 126/538 (23%), Positives = 234/538 (43%), Gaps = 48/538 (8%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 + SP Y LY L D I L++ NI +R +DNG ++ +P+ V + R+ LA Sbjct: 45 MLWAKSPDYRVLYSNLNDRDGGDIVTQLTQLNIPYRFADNGGALLIPADKVHETRLRLAQ 104 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 QGLP + G+EL D+ FG++ F +++ RALEGE+ARTI ++ ++ RVH+ MP Sbjct: 105 QGLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIGTLGPVLNVRVHLAMP 162 Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + PTASV + AI ++V+++V L +VTV++ TG+LL Sbjct: 163 KPSLFVREQKSPTASVTLALQPGRALDDGQINAIVYMVSSSVAGLPPANVTVVNQTGRLL 222 Query: 218 TANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 T ++ R++ L +++ + I LA +G N + V A+++ +++ + Sbjct: 223 TQSDSAGRDLNAAQLKFTNEVENRFQRRIETILAPMVGSGNVHAQVTAQVDFASREQTDE 282 Query: 277 VYDP----DSKVERSIRLSKDAQRSET----------SQPESAVTVEQNMPHVSDRKVPL 322 Y P + RS ++S Q T +QP + +P + Sbjct: 283 EYKPNQAANQGAVRSQQVSTSEQLGGTNVGGVPGALSNQPSATPVAPIEVPQATPAAGAG 342 Query: 323 -------PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS 375 + + + ++ +N+E++ T ++RLS+AVVVN G Sbjct: 343 AAANAAKQTATSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVNYGSDKAGK--- 399 Query: 376 ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435 LA++ + A G ++ RGDT+ + + F + + Sbjct: 400 -PIALSKDQLAQVESLTREAMGFSTVRGDTLNVVNTPFNATDDASGSNLPFWQQPSF--- 455 Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495 F ++N +L+ L+ L +R L I ++ + S+ + + T Sbjct: 456 FDQLLNIGRYLLILLVAWILWRKLVRPL--IAKKQEADKAAASVNNIVQAAQTTETAKQT 513 Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + +AL N Q R+++ V Q R+ + + + A ++R+W ++ Sbjct: 514 KEELALRKKN----------QQRVSAEVQAQ---RIRELADKDPRIVALVIRQWMSND 558 >gi|86748397|ref|YP_484893.1| flagellar MS-ring protein [Rhodopseudomonas palustris HaA2] gi|86571425|gb|ABD05982.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris HaA2] Length = 532 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 142/554 (25%), Positives = 248/554 (44%), Gaps = 29/554 (5%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + LL F K LG R++ + +V + + F V+ P LY L V D + I Sbjct: 1 MQSLLGFLKG---LGAARVMAMIAVTMALLGFFAFVIMRVSQPQMTTLYTDLSVEDSSSI 57 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L I F + ++G+ + VP V + R+ LA GYE+FDK ++ G T Sbjct: 58 IKELERQAIPFEMRNDGAILMVPKDKVTRLRMKLAEG-GLPKGGGVGYEIFDKSDALGTT 116 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 SF+Q I +RALEGE++RTI++I + AARVH+V+P+ F + P+AS+++R Sbjct: 117 SFVQNINHLRALEGELSRTIRAIDRVQAARVHLVLPERPLFSRETPEPSASIVLRVRGAL 176 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQA--IQHEI 241 + AIRHLVA+AV L V+++D G+LL N + + + + Sbjct: 177 EPQQVRAIRHLVASAVNGLKPQRVSIVDEGGQLLADGSASANAADGAAGDERRTSFEKRM 236 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 I +++ +G R V A+ + + +DP+ +V RS + ++ +++TS Sbjct: 237 RNEIEGIVSSVVGSGRARVQVTADFDYNKITQTSDKFDPEGRVLRSSQTREE--QAQTSA 294 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 + VTV +P ++ + + + K EE +NYEI+ + + ++ RLS+AV Sbjct: 295 ADGQVTVNNELPG--NQAPGGAGARDQSKKSEETNNYEISRVTKTEVTEAGRVNRLSVAV 352 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 +V+ + G + L I +V +A G + +RGD I + ++ F E Sbjct: 353 LVDGSYTKDEKGELVYAERPKEQLDRIAALVRSAIGFDQKRGDQIEVVNLRFAEAPQVEK 412 Query: 422 GTVQVSFMDIL---SRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 + +L +I V V L+V F+ + L + Sbjct: 413 LPEPAGLLGMLQFTKDDIMNMIQLGVMFVLGLVVLFMVIRPLVK---------------R 457 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 +L+ P S A + + ++ S+ S +++ V QS R+ + E N Sbjct: 458 VLASDPASEASGLPALADGSLPQIGSDG-QAGTSMIDIAQVQGQVHAQSVHRVGELAERN 516 Query: 539 EERFAKILRKWARS 552 A I+R+W Sbjct: 517 PNETAAIVRQWLAE 530 >gi|218699502|ref|YP_002407131.1| flagellar MS-ring protein [Escherichia coli IAI39] gi|218369488|emb|CAR17255.1| flagellar basal-body MS-ring and collar protein [Escherichia coli IAI39] Length = 552 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 138/568 (24%), Positives = 249/568 (43%), Gaps = 51/568 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + LI+A V +M+ A + +P Y L+ L D I L++ Sbjct: 13 WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 71 NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247 AI HLV++AV L G+VT++D G LLT +N R++ L ++ I+ I Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303 L+ +G N + V A+L+ +++ E Y P+ RS +L ++++S + P Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307 Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347 N P ++ S + ++ E SNYE++ T Sbjct: 308 GVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 + ++RLS+AVVVN L + + + +I + A G + +RGD++ Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEALTREAMGFSEKRGDSLN 423 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + + F + + G + + ++ A +L+ L+ L A+R Sbjct: 424 VVNSPF-NSSDESGGALPFWQQQVF---IDELLAAGRWLLVLLVAWLLWRKAVRPQLTRR 479 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 A+ + + + + AV L ++ + +NQ R+ + V Q Sbjct: 480 -AEAVKTVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526 Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|123442764|ref|YP_001006741.1| flagellar MS-ring protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089725|emb|CAL12578.1| flagellar M-ring protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 566 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 126/546 (23%), Positives = 231/546 (42%), Gaps = 57/546 (10%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 + SP Y LY L D I L++ NI +R +DNG ++ +P+ V + R+ LA Sbjct: 45 MLWAKSPDYRVLYSNLNDRDGGDIVTQLTQLNIPYRFADNGGALLIPADKVHETRLRLAQ 104 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 QGLP + G+EL D+ FG++ F +++ RALEGE+ARTI ++ ++ RVH+ MP Sbjct: 105 QGLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIGTLGPVLNVRVHLAMP 162 Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + PTASV + AI ++V+++V L +VTV+D TG+LL Sbjct: 163 KPSLFVREQKSPTASVTLALQPGRALDDGQINAIVYMVSSSVAGLPPANVTVVDQTGRLL 222 Query: 218 TANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 T ++ R++ L +++ + I LA +G N + V A+++ +++ + Sbjct: 223 TQSDSAGRDLNAAQLKFTNEVENRFQRRIETILAPMVGSGNVHAQVTAQVDFASREQTDE 282 Query: 277 VYDP----DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV------------ 320 Y P + RS ++S Q T+ N P + Sbjct: 283 EYKPNQAANQGAVRSQQVSTSEQLGGTNV-GGVPGALSNQPSATPVAPIEIPQATPAAGA 341 Query: 321 -------------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367 + + + ++ +N+E++ T ++RLS+AVVVN G Sbjct: 342 GAAANAANRPATAARQTATSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVNYGS 401 Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVS 427 LA++ + A G ++ RGDT+ + + F + + Sbjct: 402 DKAGK----PIALSKDQLAQVESLTREAMGFSTVRGDTLNVVNTPFNATDDASGSNLPFW 457 Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISS 487 F ++N +L+ L+ L +R L I ++ + S+ + + Sbjct: 458 QQPSF---FDQLLNIGRYLLILLVAWILWRKLVRPL--IAKKQEADKAAASVNNIVQAAQ 512 Query: 488 AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILR 547 T + +AL N Q R+++ V Q R+ + + + A ++R Sbjct: 513 TTETAKQTKEELALRKKN----------QQRVSAEVQAQ---RIRELADKDPRIVALVIR 559 Query: 548 KWARSE 553 +W ++ Sbjct: 560 QWMSND 565 >gi|91211156|ref|YP_541142.1| flagellar MS-ring protein [Escherichia coli UTI89] gi|215487138|ref|YP_002329569.1| flagellar MS-ring protein [Escherichia coli O127:H6 str. E2348/69] gi|218558795|ref|YP_002391708.1| flagellar MS-ring protein [Escherichia coli S88] gi|237705897|ref|ZP_04536378.1| flagellar MS-ring protein [Escherichia sp. 3_2_53FAA] gi|300940393|ref|ZP_07154978.1| flagellar M-ring protein FliF [Escherichia coli MS 21-1] gi|312967135|ref|ZP_07781353.1| flagellar M-ring protein FliF [Escherichia coli 2362-75] gi|91072730|gb|ABE07611.1| flagellar M-ring protein [Escherichia coli UTI89] gi|215265210|emb|CAS09600.1| flagellar basal-body MS-ring and collar protein [Escherichia coli O127:H6 str. E2348/69] gi|218365564|emb|CAR03291.1| flagellar basal-body MS-ring and collar protein [Escherichia coli S88] gi|226900654|gb|EEH86913.1| flagellar MS-ring protein [Escherichia sp. 3_2_53FAA] gi|294491623|gb|ADE90379.1| flagellar M-ring protein FliF [Escherichia coli IHE3034] gi|300454787|gb|EFK18280.1| flagellar M-ring protein FliF [Escherichia coli MS 21-1] gi|307626586|gb|ADN70890.1| flagellar MS-ring protein [Escherichia coli UM146] gi|312288599|gb|EFR16501.1| flagellar M-ring protein FliF [Escherichia coli 2362-75] gi|323952431|gb|EGB48304.1| flagellar M-ring protein FliF [Escherichia coli H252] gi|323956334|gb|EGB52077.1| flagellar M-ring protein FliF [Escherichia coli H263] Length = 552 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 138/568 (24%), Positives = 249/568 (43%), Gaps = 51/568 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + LI+A V +M+ A + +P Y L+ L D I L++ Sbjct: 13 WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 71 NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247 AI HLV++AV L G+VT++D G LLT +N R++ L ++ I+ I Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303 L+ +G N + V A+L+ +++ E Y P+ RS +L ++++S + P Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307 Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347 N P ++ S + ++ E SNYE++ T Sbjct: 308 GVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 + ++RLS+AVVVN L + + + +I + A G + +RGD++ Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEALTREAMGFSEKRGDSLN 423 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + + F + + G + + ++ A +L+ L+ L A+R Sbjct: 424 VVNSPF-NSSDESGGALPFWQQQVFIDQ---LLAAGRWLLVLLVAWLLWRKAVRPQLTRR 479 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 A+ + + + + AV L ++ + +NQ R+ + V Q Sbjct: 480 -AEAVKTVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526 Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|324114219|gb|EGC08192.1| flagellar M-ring protein FliF [Escherichia fergusonii B253] Length = 552 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 131/572 (22%), Positives = 252/572 (44%), Gaps = 50/572 (8%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 + L++ + R +++ S + + +A + +P Y L+ L D I Sbjct: 9 KSLEWLNRLRANPRIPLIVAGS---AAVAVIVALILWAKAPDYRTLFSNLSDQDGGAIVS 65 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F Sbjct: 66 QLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQF 123 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 124 SEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRAL 183 Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIE 242 AI HLV++AV L G+VT++D +G LLT +N R++ L ++ I+ Sbjct: 184 DEGQISAIVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKYASDVEGRIQ 243 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQRSET 299 I L+ +G N + V A+L+ +++ E Y P+ ++ S+ ++++S + Sbjct: 244 RRIEAILSPIVGNGNVHAQVTAQLDFASKEQTEEQYRPNGDQSQATLRSRQVNESEQSGS 303 Query: 300 SQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTK 343 P N P ++ S + ++ E SNYE++ Sbjct: 304 GYPGGVPGALSNQPAPANSAPISTPPANQNNRQQQTSTSSNSGPRSTQRNETSNYEVDRT 363 Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403 T + ++RLS+AVVVN + + +I + A G + +RG Sbjct: 364 IRHTKMNVGDVQRLSVAVVVNYKATPDGKPL----PLSAEQMKQIEDLTREAMGFSEKRG 419 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 D++ + + F + + G + + +++A +L+ L+ L A+R Sbjct: 420 DSLNVVNSPFNTSD-ESGGELPFWQQQVFIDQ---LLSAGRWLLVLLVAWLLWRKAVRPQ 475 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 + + + + + AV L ++ + +NQ R+++ + Sbjct: 476 LTRR-VEAVKAVQQQAQARQEVEDAVEVRLSKDEQLQQRRANQ-----------RMSAEM 523 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 Q R+ M + + A ++R+W ++ E Sbjct: 524 MSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|307312476|ref|ZP_07592110.1| flagellar M-ring protein FliF [Escherichia coli W] gi|306907647|gb|EFN38150.1| flagellar M-ring protein FliF [Escherichia coli W] gi|315061238|gb|ADT75565.1| flagellar basal-body MS-ring and collar protein [Escherichia coli W] gi|323378185|gb|ADX50453.1| flagellar M-ring protein FliF [Escherichia coli KO11] Length = 552 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 138/568 (24%), Positives = 251/568 (44%), Gaps = 51/568 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + LI+A V +M+ A + +P Y L+ L D I L++ Sbjct: 13 WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R+S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 71 NIPYRVSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247 AI HLV++AV L G+VT++D G LLT +N R++ L ++ I+ I Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303 L+ +G N + V A+L+ +++ E Y P+ RS +L ++++S + P Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307 Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347 N P ++ S + ++ E SNYE++ T Sbjct: 308 GVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 + ++RLS+AVVVN L + + + +I + A G + +RGD++ Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLN 423 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + + F + + ++ F + ++ A +L+ L+ L A+R Sbjct: 424 VVNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRR 479 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 A+ + + + + AV L ++ + +NQ R+ + V Q Sbjct: 480 -AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526 Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|320175473|gb|EFW50572.1| Flagellar M-ring protein FliF [Shigella dysenteriae CDC 74-1112] Length = 552 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 137/568 (24%), Positives = 250/568 (44%), Gaps = 51/568 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + LI+A V +M+ A + +P Y L+ L D I L++ Sbjct: 13 WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 71 NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247 AI HLV++AV L G+VT++D G LLT +N R++ L ++ I+ I Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303 L+ +G N + V A+L+ +++ E Y P+ RS +L ++++S + P Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307 Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347 N P ++ S + ++ E SNYE++ T Sbjct: 308 GVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 + ++RLS+AVVVN L + + + +I + A G + +RGD++ Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLN 423 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + + F + + ++ F + ++ A +L+ L+ L A+R Sbjct: 424 VVNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTSR 479 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 A+ + + + + AV L ++ + +NQ R+ + + Q Sbjct: 480 -AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEIMSQ- 526 Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|312973845|ref|ZP_07788017.1| flagellar M-ring protein FliF [Escherichia coli 1827-70] gi|310332440|gb|EFP99675.1| flagellar M-ring protein FliF [Escherichia coli 1827-70] Length = 552 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 136/567 (23%), Positives = 249/567 (43%), Gaps = 49/567 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + LI+A V +M+ A + +P Y L+ L D I L++ Sbjct: 13 WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 71 NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQAIQHEIEMNINK 247 AI HLV++AV L G+VT++D G LLT N R++ L ++ I+ I Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQFNTSGRDLNDAQLKYASDVEGRIQRRIEA 248 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQRSETSQPES 304 L+ +G N + V A+L+ +++ E Y P+ ++ S+ ++++S + P Sbjct: 249 ILSPIVGKGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGG 308 Query: 305 AVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIATT 348 N P ++ S + ++ E SNYE++ T Sbjct: 309 VPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTK 368 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 + ++RLS+AVVVN L + + + +I + A G + +RGD++ + Sbjct: 369 MNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLNV 424 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 + F + + ++ F + ++ A +L+ L+ L A+R Sbjct: 425 VNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRR- 479 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 A+ + + + + AV L ++ + +NQ R+ + V Q Sbjct: 480 AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ-- 526 Query: 529 LRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 527 -RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|110642044|ref|YP_669774.1| flagellar MS-ring protein [Escherichia coli 536] gi|191173305|ref|ZP_03034835.1| flagellar M-ring protein FliF [Escherichia coli F11] gi|110343636|gb|ABG69873.1| flagellar M-ring protein [Escherichia coli 536] gi|190906422|gb|EDV66031.1| flagellar M-ring protein FliF [Escherichia coli F11] Length = 552 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 138/568 (24%), Positives = 248/568 (43%), Gaps = 51/568 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + LI+A V +M+ A + +P Y L+ L D I L++ Sbjct: 13 WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 71 NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247 AI HLV++AV L G+VT++D G LLT +N R++ L ++ I+ I Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303 L+ +G N + V A+L+ +++ E Y P+ RS +L ++++S + P Sbjct: 249 ILSPIVGNGNIHAQVSAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307 Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347 N P ++ S + ++ E SNYE++ T Sbjct: 308 GVPGALSNQPAPANNAPISTPPTNQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 + ++RLS+AVVVN L + + + +I + A G + +RGD++ Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEALTREAMGFSEKRGDSLN 423 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + + F + + G + ++ A +L+ L+ L A+R Sbjct: 424 VVNSPF-NSSDESGGALPFWQQQAFIDQ---LLAAGRWLLVLLVAWLLWRKAVRPQLTRR 479 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 A+ + + + + AV L ++ + +NQ R+ + V Q Sbjct: 480 -AEAVKTVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526 Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|323977881|gb|EGB72967.1| flagellar M-ring protein FliF [Escherichia coli TW10509] Length = 552 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 135/567 (23%), Positives = 250/567 (44%), Gaps = 49/567 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + LI+A V +M+ A + +P Y L+ L D I L++ Sbjct: 13 WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 71 NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247 AI HLV++AV L G+VT++D G LLT +N R++ L ++ I+ I Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQRSETSQPES 304 L+ +G N + V A+L+ +++ E Y P+ ++ S+ ++++S + P Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDKSQAALRSRQLNESEQSGSGYPGG 308 Query: 305 AVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIATT 348 N P ++ + + ++ E SNYE++ T Sbjct: 309 VPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNNGPRSTQRNETSNYEVDRTIRHTK 368 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 + ++RLS+AVVVN L + + + +I + A G + +RGD++ + Sbjct: 369 MNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLNV 424 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 + F + + G + + +++A +L+ L+ L A+R Sbjct: 425 VNSPF-NSSDESGGELPFWQQQVFIDQ---LLSAGRWLLVLLVAWLLWRKAVRPQLTRR- 479 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 A+ + + + + AV L ++ + +NQ R+ + V Q Sbjct: 480 AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ-- 526 Query: 529 LRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 527 -RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|260868531|ref|YP_003234933.1| flagellar basal-body MS-ring and collar protein FliF [Escherichia coli O111:H- str. 11128] gi|257764887|dbj|BAI36382.1| flagellar basal-body MS-ring and collar protein FliF [Escherichia coli O111:H- str. 11128] gi|323180809|gb|EFZ66349.1| flagellar M-ring protein FliF [Escherichia coli 1180] Length = 552 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 136/567 (23%), Positives = 251/567 (44%), Gaps = 49/567 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + LI+A V +M+ A + +P Y L+ L D I L++ Sbjct: 13 WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R+S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 71 NIPYRVSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFREQVN 128 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247 AI HLV++AV L G+VT++D G LLT +N R++ L ++ I+ I Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQRSETSQPES 304 L+ +G N + V A+L+ +++ E Y P+ ++ S+ ++++S + P Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGG 308 Query: 305 AVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIATT 348 N P ++ S + ++ E SNYE++ T Sbjct: 309 VPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTK 368 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 + ++RLS+AVVVN L + + + +I + A G + +RGD++ + Sbjct: 369 MNVGDVQRLSVAVVVNYKTLPDGK----PVPLSNEQMKQIEDLTREAMGFSEKRGDSLNV 424 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 + F + + ++ F + ++ A +L+ L+ L A+R Sbjct: 425 VNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRR- 479 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 A+ + + + + AV L ++ + +NQ R+ + V Q Sbjct: 480 AEAMKAVQQQAQAHEEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ-- 526 Query: 529 LRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 527 -RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|324005863|gb|EGB75082.1| flagellar M-ring protein FliF [Escherichia coli MS 57-2] Length = 552 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 134/576 (23%), Positives = 255/576 (44%), Gaps = 50/576 (8%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 A+ + L++ + + +++ S + + +A + +P Y L+ L D Sbjct: 5 AVQTKSLEWLNRLRANPKIPLIVAGS---AAVAVMVALILWAKAPDYRTLFSNLSDQDGG 61 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG Sbjct: 62 AIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFG 119 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 ++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 120 ISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLP 179 Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQ 238 AI HLV++AV L G+VT++D G LLT +N R++ L ++ Sbjct: 180 GRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVE 239 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQ 295 I+ I L+ +G N + V A+L+ +++ E Y P+ ++ S+ +++ Sbjct: 240 GRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESE 299 Query: 296 RSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYE 339 +S + P N P ++ S + ++ E SNYE Sbjct: 300 QSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYE 359 Query: 340 INTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN 399 ++ T + ++RLS+AVVVN L + + + +I + A G + Sbjct: 360 VDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFS 415 Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA 459 +RGD++ + + F ++ ++ F + ++ A +L+ L+ L A Sbjct: 416 EKRGDSLNVVNSPFNSSE---ESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKA 471 Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519 +R A+ + + + + AV L ++ + +NQ R+ Sbjct: 472 VRPQLTRR-AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RL 519 Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + V Q R+ M + + A ++R+W ++ E Sbjct: 520 GAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|26248206|ref|NP_754246.1| flagellar MS-ring protein [Escherichia coli CFT073] gi|227885633|ref|ZP_04003438.1| flagellar MS-ring protein [Escherichia coli 83972] gi|300975548|ref|ZP_07173059.1| flagellar M-ring protein FliF [Escherichia coli MS 45-1] gi|301050702|ref|ZP_07197563.1| flagellar M-ring protein FliF [Escherichia coli MS 185-1] gi|306814239|ref|ZP_07448405.1| flagellar MS-ring protein [Escherichia coli NC101] gi|26108610|gb|AAN80813.1|AE016762_66 Flagellar M-ring protein [Escherichia coli CFT073] gi|227837206|gb|EEJ47672.1| flagellar MS-ring protein [Escherichia coli 83972] gi|300297625|gb|EFJ54010.1| flagellar M-ring protein FliF [Escherichia coli MS 185-1] gi|300410317|gb|EFJ93855.1| flagellar M-ring protein FliF [Escherichia coli MS 45-1] gi|305852398|gb|EFM52849.1| flagellar MS-ring protein [Escherichia coli NC101] gi|307553951|gb|ADN46726.1| flagellar M-ring protein FliF [Escherichia coli ABU 83972] gi|315290255|gb|EFU49633.1| flagellar M-ring protein FliF [Escherichia coli MS 153-1] Length = 552 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 138/568 (24%), Positives = 248/568 (43%), Gaps = 51/568 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + LI+A V +M+ A + +P Y L+ L D I L++ Sbjct: 13 WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 71 NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247 AI HLV++AV L G+VT++D G LLT +N R++ L ++ I+ I Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303 L+ +G N + V A+L+ +++ E Y P+ RS +L ++++S + P Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307 Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347 N P ++ S + ++ E SNYE++ T Sbjct: 308 GVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 + ++RLS+AVVVN L + + + +I + A G + +RGD++ Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEALTREAMGFSEKRGDSLN 423 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + + F + + G + ++ A +L+ L+ L A+R Sbjct: 424 VVNSPF-NSSDESGGALPFWQQQAFIDQ---LLAAGRWLLVLLVAWLLWRKAVRPQLTRR 479 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 A+ + + + + AV L ++ + +NQ R+ + V Q Sbjct: 480 -AEAVKTVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526 Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|238751780|ref|ZP_04613268.1| Flagellar M-ring protein [Yersinia rohdei ATCC 43380] gi|238710051|gb|EEQ02281.1| Flagellar M-ring protein [Yersinia rohdei ATCC 43380] Length = 564 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 126/544 (23%), Positives = 229/544 (42%), Gaps = 55/544 (10%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 + SP Y LY L D I L++ NI +R +D+G ++ +P+ V + R+ LA Sbjct: 45 MLWAKSPDYRVLYSNLSDRDGGDIVTQLTQLNIPYRFADSGGALLIPADKVHETRLRLAQ 104 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 QGLP + G+EL D+ FG++ F +++ RALEGE+ARTI ++ ++ RVH+ MP Sbjct: 105 QGLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIGTLGPVLNVRVHLAMP 162 Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + PTASV + AI ++V+++V L +VTV+D TG+LL Sbjct: 163 KPSLFVREQKSPTASVTLALQPGRALDDGQINAIVYMVSSSVAGLPPANVTVVDQTGRLL 222 Query: 218 TANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 T ++ R++ L +++ + I LA +G N + V A+++ +++ + Sbjct: 223 TQSDSAGRDLNAAQLKFTNEVENRFQRRIETILAPMVGSGNVHAQVTAQVDFASREQTDE 282 Query: 277 VYDP----DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV------------ 320 Y P + RS ++S Q ++ N P + Sbjct: 283 EYKPNQSANQGAVRSAQISTSEQLGGSNV-GGVPGALSNQPSATPVAPIEVTQPAGANNA 341 Query: 321 -----------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369 + + + ++ +NYE++ T ++RLS+AVVVN G Sbjct: 342 NAAARPAATPAARSTATSSNSRHDQTTNYEVDRTIRHTQQQAGMVQRLSVAVVVNYGSDK 401 Query: 370 EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFM 429 LA++ + A G ++ RGDT+ + + F + Sbjct: 402 AGK----PIALTKDQLAQVESLTREAMGFSTNRGDTLNVVNTPFNATDDTTGRALPFWQQ 457 Query: 430 DILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAV 489 F ++NA +L+ L+ L +R + + + S+ S + Sbjct: 458 QSF---FDQLLNAGRYLLILLVTWILWRKLVRPMLAKKNV--ADKAAASVNSMVQAAQVT 512 Query: 490 TTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549 T + +AL N Q RI++ V Q R+ + + + A ++R+W Sbjct: 513 ETVKQSKEELALRKKN----------QQRISAEVQAQ---RIRELADKDPRVVALVIRQW 559 Query: 550 ARSE 553 ++ Sbjct: 560 MSND 563 >gi|15802373|ref|NP_288399.1| flagellar MS-ring protein [Escherichia coli O157:H7 EDL933] gi|15831931|ref|NP_310704.1| flagellar MS-ring protein [Escherichia coli O157:H7 str. Sakai] gi|168751866|ref|ZP_02776888.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4113] gi|168758251|ref|ZP_02783258.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4401] gi|168764438|ref|ZP_02789445.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4501] gi|168771544|ref|ZP_02796551.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4486] gi|168777364|ref|ZP_02802371.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4196] gi|168783334|ref|ZP_02808341.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4076] gi|168790304|ref|ZP_02815311.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC869] gi|168802284|ref|ZP_02827291.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC508] gi|195939244|ref|ZP_03084626.1| flagellar MS-ring protein [Escherichia coli O157:H7 str. EC4024] gi|208810543|ref|ZP_03252419.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4206] gi|208817037|ref|ZP_03258157.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4045] gi|208820542|ref|ZP_03260862.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4042] gi|209395809|ref|YP_002271054.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4115] gi|217328740|ref|ZP_03444821.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. TW14588] gi|254793588|ref|YP_003078425.1| flagellar MS-ring protein [Escherichia coli O157:H7 str. TW14359] gi|261227567|ref|ZP_05941848.1| flagellar basal-body MS-ring and collar protein [Escherichia coli O157:H7 str. FRIK2000] gi|261254609|ref|ZP_05947142.1| flagellar basal-body MS-ring and collar protein [Escherichia coli O157:H7 str. FRIK966] gi|12516042|gb|AAG56953.1|AE005416_7 flagellar biosynthesis; basal-body MS(membrane and supramembrane)-ring and collar protein [Escherichia coli O157:H7 str. EDL933] gi|13362145|dbj|BAB36100.1| flagellar hook-basal body MS ring protein FliF [Escherichia coli O157:H7 str. Sakai] gi|187767394|gb|EDU31238.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4196] gi|188014158|gb|EDU52280.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4113] gi|188999271|gb|EDU68257.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4076] gi|189354893|gb|EDU73312.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4401] gi|189359720|gb|EDU78139.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4486] gi|189365550|gb|EDU83966.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4501] gi|189370217|gb|EDU88633.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC869] gi|189375710|gb|EDU94126.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC508] gi|208725059|gb|EDZ74766.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4206] gi|208731380|gb|EDZ80069.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4045] gi|208740665|gb|EDZ88347.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4042] gi|209157209|gb|ACI34642.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4115] gi|209766878|gb|ACI81751.1| flagellar hook-basal body MS ring protein FliF [Escherichia coli] gi|209766880|gb|ACI81752.1| flagellar hook-basal body MS ring protein FliF [Escherichia coli] gi|209766882|gb|ACI81753.1| flagellar hook-basal body MS ring protein FliF [Escherichia coli] gi|209766886|gb|ACI81755.1| flagellar hook-basal body MS ring protein FliF [Escherichia coli] gi|217318087|gb|EEC26514.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. TW14588] gi|254592988|gb|ACT72349.1| flagellar basal-body MS-ring and collar protein [Escherichia coli O157:H7 str. TW14359] gi|320191912|gb|EFW66559.1| Flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC1212] gi|326342348|gb|EGD66129.1| Flagellar M-ring protein FliF [Escherichia coli O157:H7 str. 1044] gi|326344853|gb|EGD68600.1| Flagellar M-ring protein FliF [Escherichia coli O157:H7 str. 1125] Length = 552 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 135/567 (23%), Positives = 249/567 (43%), Gaps = 49/567 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + LI+A V +M+ A + +P Y L+ L D I L++ Sbjct: 13 WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 71 NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIVQAIQHEIEMNINK 247 AI HLV++AV L G+VT++D G LLT + R++ L ++ I+ I Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSWRDLNDAQLKYASDVEGRIQRRIEA 248 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQRSETSQPES 304 L+ +G N + V A+L+ +++ E Y P+ ++ S+ ++++S + P Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGG 308 Query: 305 AVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIATT 348 N P ++ S + ++ E SNYE++ T Sbjct: 309 VPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTK 368 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 + ++RLS+AVVVN L + + + +I + A G + +RGD++ + Sbjct: 369 MNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLNV 424 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 + F + + ++ F + ++ A +L+ L+ L A+R Sbjct: 425 VNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRR- 479 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 A+ + + + + AV L ++ + +NQ R+ + V Q Sbjct: 480 AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ-- 526 Query: 529 LRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 527 -RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|157158866|ref|YP_001463240.1| flagellar MS-ring protein [Escherichia coli E24377A] gi|157080896|gb|ABV20604.1| flagellar M-ring protein FliF [Escherichia coli E24377A] Length = 552 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 139/568 (24%), Positives = 249/568 (43%), Gaps = 51/568 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + LI+A V +M+ A + +P Y L+ L D I L++ Sbjct: 13 WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 71 NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE++RTI +I + ARVH+ MP F + P+ASV I + Sbjct: 129 YQRALEGELSRTIATIGPVKGARVHLAMPKPSLFVREQKSPSASVTINLLPGRALDEGQI 188 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247 AI HLV++AV L G+VT++D G LLT +N R++ L ++ I+ I Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303 L+ +G N + V A+L+ +++ E Y P+ RS +L ++++S + P Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307 Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347 N P ++ S + ++ E SNYE++ T Sbjct: 308 GVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 + ++RLS+AVVVN L + + + +I + A G + +RGD++ Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLN 423 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + + F + + ++ F + ++ A +L+ L+ L A+R Sbjct: 424 VVNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRR 479 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 A+ + + + + AV L ++ + +NQ R+ + V Q Sbjct: 480 -AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526 Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|256017869|ref|ZP_05431734.1| flagellar MS-ring protein [Shigella sp. D9] gi|332278895|ref|ZP_08391308.1| flagellar basal-body MS-ring and collar protein [Shigella sp. D9] gi|332101247|gb|EGJ04593.1| flagellar basal-body MS-ring and collar protein [Shigella sp. D9] Length = 552 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 137/568 (24%), Positives = 250/568 (44%), Gaps = 51/568 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + LI+A V +M+ A + +P Y L+ L D I L++ Sbjct: 13 WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R+S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 71 NIPYRVSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247 AI HLV++AV L G+VT++D G LLT + R++ L ++ I+ I Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSSTSGRDLNDAQLKYASDVEGRIQRRIEA 248 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303 L+ +G N + V A+L+ +++ E Y P+ RS +L ++++S + P Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307 Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347 N P ++ S + ++ E SNYE++ T Sbjct: 308 GVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 + ++RLS+AVVVN L + + + +I + A G + +RGD++ Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLN 423 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + + F + + ++ F + ++ A +L+ L+ L A+R Sbjct: 424 VVNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRR 479 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 A+ + + + + AV L ++ + +NQ R+ + V Q Sbjct: 480 -AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526 Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|312946531|gb|ADR27358.1| flagellar MS-ring protein [Escherichia coli O83:H1 str. NRG 857C] Length = 552 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 134/576 (23%), Positives = 253/576 (43%), Gaps = 50/576 (8%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 A+ + L++ + + +++ S + + +A + +P Y L+ L D Sbjct: 5 AVQTKSLEWLNRLRANPKIPLIVAGS---AAVAVMVALILWAKAPDYRTLFSNLSDQDGG 61 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG Sbjct: 62 AIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFG 119 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 ++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 120 ISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLP 179 Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQ 238 AI HLV++AV L G+VT++D G LLT +N R++ L ++ Sbjct: 180 GRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVE 239 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQ 295 I+ I L+ +G N + V A+L+ +++ E Y P+ ++ S+ +++ Sbjct: 240 GRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESE 299 Query: 296 RSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYE 339 +S + P N P ++ S + ++ E SNYE Sbjct: 300 QSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYE 359 Query: 340 INTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN 399 ++ T + ++RLS+AVVVN L + + + +I + A G + Sbjct: 360 VDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFS 415 Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA 459 +RGD++ + + F + + G + ++ A +L+ L+ L A Sbjct: 416 EKRGDSLNVVNSPF-NSSDESGGALPFWQQQAFIDQ---LLAAGRWLLVLLVAWLLWRKA 471 Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519 +R A+ + + + + AV L ++ + +NQ R+ Sbjct: 472 VRPQLTRR-AEAVKTVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RL 519 Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + V Q R+ M + + A ++R+W ++ E Sbjct: 520 GAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|323961982|gb|EGB57581.1| flagellar M-ring protein FliF [Escherichia coli H489] Length = 552 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 136/567 (23%), Positives = 250/567 (44%), Gaps = 49/567 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + LI+A V +M+ A + +P Y L+ L D I L++ Sbjct: 13 WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKTPDYRTLFSNLSDQDGGAIVSQLTQM 70 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 71 NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247 AI HLV++AV L G+VT++D G LLT +N R++ L ++ I+ I Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQRSETSQPES 304 L+ +G N + V A+L+ +++ E Y P+ ++ S+ ++++S + P Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGG 308 Query: 305 AVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIATT 348 N P ++ S + ++ E SNYE++ T Sbjct: 309 VPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTK 368 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 + ++RLS+AVVVN L + + + +I + A G + +RGD++ + Sbjct: 369 MNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLNV 424 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 + F ++ ++ F + ++ A +L+ L+ L A+R Sbjct: 425 VNSPFNSSE---ESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRR- 479 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 A+ + + + + AV L ++ + +NQ R+ + V Q Sbjct: 480 AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ-- 526 Query: 529 LRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 527 -RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|307131589|ref|YP_003883605.1| flagellar M-ring protein fliF [Dickeya dadantii 3937] gi|306529118|gb|ADM99048.1| Flagellar M-ring protein fliF [Dickeya dadantii 3937] Length = 573 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 128/587 (21%), Positives = 239/587 (40%), Gaps = 66/587 (11%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 F + L + L I + +A + P Y LY L D I L Sbjct: 13 KSFGEILNRLRANPKIPLLIASAATIAIVVALSLWARGPDYRVLYTNLNERDGGSIVSEL 72 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + NI +R +++G++I +PS V + R+ LA QGLP + G+EL D+ FG++ F + Sbjct: 73 GKMNIPYRFTESGAAIMIPSDKVYETRLKLAQQGLPKGGA-VGFELLDQE-KFGISQFSE 130 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 +I RALEGE+ART++++ I ARVH+ +P F + P+A+V + Sbjct: 131 QINYQRALEGELARTMETLGPIQNARVHLAIPKPSLFVREQKSPSAAVTVTLQPGRALDD 190 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMN 244 AI +LV+++V L VTV+D TGKLLT N+ R++ L ++ + Sbjct: 191 SQISAITYLVSSSVAGLPADKVTVVDQTGKLLTQNDSSGRDLNAAQLKYANEVESNYQRR 250 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE------ 298 I L +G N + V A+++ +++ + Y P+ ++ S+ +S+ Sbjct: 251 IEAILTPVVGAGNVHAQVTAQIDFASREQTDEQYQPNQTPNQAAVRSQQNSQSDQRGGPN 310 Query: 299 --------TSQPESAVTVEQNMPH-----------------------VSDRKVPLPRSLE 327 ++ P A T + P + + Sbjct: 311 VGGVPGALSNTPTPAPTAPISTPPANNANNANNANNANNANANTAGTNTQTSAGNAANQT 370 Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE 387 + ++ NYE++ T + ++RLS+AVVVN + + + + D L + Sbjct: 371 YNSRHDQTINYEVDRTIRHTKQNTGNVQRLSVAVVVNYTQGEDGKPAALN----DDQLKK 426 Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447 I +V + G ++ RGDT+ + + F + ++ ++ F + F + +L+ Sbjct: 427 IEALVRESMGFSNDRGDTLNVVNTPFT---ITDATGGELPFWQKQA-FFDLLTEVGRWLL 482 Query: 448 GTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQD 507 ++ L +R + + L VT M + Sbjct: 483 VLIVGWILYRKLVRPQLQRRAQVQEAAEAAASLRGQDADVTVTLSTMEEE---------- 532 Query: 508 IFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 R + R ++ + Q R+ + E + A ++R W +E+ Sbjct: 533 ---LQRKSEQRAHAEMHSQ---RVRELAENDPRVVALVIRHWMSNEL 573 >gi|74312478|ref|YP_310897.1| flagellar MS-ring protein [Shigella sonnei Ss046] gi|73855955|gb|AAZ88662.1| flagellar basal-body MS(membrane and supramembrane)-ring and collar protein [Shigella sonnei Ss046] gi|323168943|gb|EFZ54623.1| flagellar M-ring protein FliF [Shigella sonnei 53G] Length = 552 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 137/568 (24%), Positives = 249/568 (43%), Gaps = 51/568 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + LI+A V +M+ A + +P Y L+ L D I L++ Sbjct: 13 WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI + S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 71 NIPYCFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247 AI HLV++AV L G+VT++D G LLT +N R++ L ++ I+ I Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303 L+ +G N + V A+L+ +++ E Y P+ RS +L ++++S + P Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307 Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347 N P ++ S + ++ E SNYE++ T Sbjct: 308 GVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 + ++RLS+AVVVN L + + + +I + A G + +RGD++ Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLN 423 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + + F + + ++ F + ++ A +L+ L+ L A+R Sbjct: 424 VVNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRR 479 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 A+ + + + + AV L ++ + +NQ R+ + V Q Sbjct: 480 -AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526 Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|193066388|ref|ZP_03047436.1| flagellar M-ring protein FliF [Escherichia coli E22] gi|194429948|ref|ZP_03062458.1| flagellar M-ring protein FliF [Escherichia coli B171] gi|301327725|ref|ZP_07220930.1| flagellar M-ring protein FliF [Escherichia coli MS 78-1] gi|192925973|gb|EDV80619.1| flagellar M-ring protein FliF [Escherichia coli E22] gi|194412037|gb|EDX28349.1| flagellar M-ring protein FliF [Escherichia coli B171] gi|300845725|gb|EFK73485.1| flagellar M-ring protein FliF [Escherichia coli MS 78-1] gi|320198628|gb|EFW73228.1| Flagellar M-ring protein FliF [Escherichia coli EC4100B] gi|323158583|gb|EFZ44597.1| flagellar M-ring protein FliF [Escherichia coli E128010] gi|323183922|gb|EFZ69309.1| flagellar M-ring protein FliF [Escherichia coli 1357] Length = 552 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 138/568 (24%), Positives = 249/568 (43%), Gaps = 51/568 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + LI+A V +M+ A + +P Y L+ L D I L++ Sbjct: 13 WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 71 NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE++RTI +I + ARVH+ MP F + P+ASV + + Sbjct: 129 YQRALEGELSRTIATIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247 AI HLV++AV L G+VT++D G LLT +N R++ L ++ I+ I Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303 L+ +G N + V A+L+ +++ E Y P+ RS +L ++++S + P Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307 Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347 N P ++ S + ++ E SNYE++ T Sbjct: 308 GVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 + ++RLS+AVVVN L + + + +I + A G + +RGD++ Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLN 423 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + + F + + ++ F + ++ A +L+ L+ L A+R Sbjct: 424 VVNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRR 479 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 A+ + + + + AV L ++ + +NQ R+ + V Q Sbjct: 480 -AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526 Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|320194349|gb|EFW68980.1| Flagellar M-ring protein FliF [Escherichia coli WV_060327] Length = 552 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 138/568 (24%), Positives = 248/568 (43%), Gaps = 51/568 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + LI+A V +M+ A + +P Y L+ L D I L++ Sbjct: 13 WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 71 NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247 AI HLV++AV L G+VT++D G LLT +N R++ L ++ I+ I Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303 L+ +G N + V A+L+ +++ E Y P+ RS +L ++++S + P Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307 Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347 N P ++ S + ++ E SNYE++ T Sbjct: 308 GVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 + ++RLS+AVVVN L + + +I + A G + +RGD++ Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPGGKPL----PLSNEQMKQIEALTREAMGFSEKRGDSLN 423 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + + F + + G + + ++ A +L+ L+ L A+R Sbjct: 424 VVNSPF-NSSDESGGALPFWQQQVFIDQ---LLAAGRWLLVLLVAWLLWRKAVRPQLTRR 479 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 A+ + + + + AV L ++ + +NQ R+ + V Q Sbjct: 480 -AEAVKTVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526 Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|331653350|ref|ZP_08354355.1| flagellar M-ring protein FliF [Escherichia coli M718] gi|331049448|gb|EGI21520.1| flagellar M-ring protein FliF [Escherichia coli M718] Length = 552 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 136/567 (23%), Positives = 247/567 (43%), Gaps = 49/567 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + LI+A V +M+ A + +P Y L+ L D I L++ Sbjct: 13 WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 71 NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQAIQHEIEMNINK 247 AI HLV++AV L G+VT++D G LLT N R++ L ++ I+ I Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQFNTSGRDLNDAQLKYASDVEGRIQRRIEA 248 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQRSETSQPES 304 L+ +G N + V A+L+ +++ E Y P+ ++ S+ ++++S + P Sbjct: 249 ILSPIVGKGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGG 308 Query: 305 AVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIATT 348 N P ++ S + ++ E SNYE++ T Sbjct: 309 VPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTK 368 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 + ++RLS+AVVVN L + + + +I + A G + +RGD++ + Sbjct: 369 MNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLNV 424 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 + F + + G + ++ A +L+ L+ L A+R Sbjct: 425 VNSPF-NSSDESGGELPFWQQQAFVDQ---LLAAGRWLLVLLVAWLLWRKAVRPQLTRR- 479 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 A+ + + + + AV L ++ + +NQ R+ + V Q Sbjct: 480 AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ-- 526 Query: 529 LRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 527 -RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|218689933|ref|YP_002398145.1| flagellar MS-ring protein [Escherichia coli ED1a] gi|291283115|ref|YP_003499933.1| Flagellar M-ring protein FliF precursor [Escherichia coli O55:H7 str. CB9615] gi|293415248|ref|ZP_06657891.1| flagellar M-ring protein FliF [Escherichia coli B185] gi|301644603|ref|ZP_07244592.1| flagellar M-ring protein FliF [Escherichia coli MS 146-1] gi|331677820|ref|ZP_08378495.1| flagellar M-ring protein FliF [Escherichia coli H591] gi|209766884|gb|ACI81754.1| flagellar hook-basal body MS ring protein FliF [Escherichia coli] gi|218427497|emb|CAR08270.1| flagellar basal-body MS-ring and collar protein [Escherichia coli ED1a] gi|290762988|gb|ADD56949.1| Flagellar M-ring protein FliF precursor [Escherichia coli O55:H7 str. CB9615] gi|291432896|gb|EFF05875.1| flagellar M-ring protein FliF [Escherichia coli B185] gi|301077078|gb|EFK91884.1| flagellar M-ring protein FliF [Escherichia coli MS 146-1] gi|320641786|gb|EFX11174.1| flagellar MS-ring protein [Escherichia coli O157:H7 str. G5101] gi|320647145|gb|EFX15978.1| flagellar MS-ring protein [Escherichia coli O157:H- str. 493-89] gi|320652429|gb|EFX20727.1| flagellar MS-ring protein [Escherichia coli O157:H- str. H 2687] gi|320658031|gb|EFX25793.1| flagellar MS-ring protein [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658603|gb|EFX26297.1| flagellar MS-ring protein [Escherichia coli O55:H7 str. USDA 5905] gi|320668501|gb|EFX35328.1| flagellar MS-ring protein [Escherichia coli O157:H7 str. LSU-61] gi|331074280|gb|EGI45600.1| flagellar M-ring protein FliF [Escherichia coli H591] Length = 552 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 136/567 (23%), Positives = 250/567 (44%), Gaps = 49/567 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + LI+A V +M+ A + +P Y L+ L D I L++ Sbjct: 13 WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 71 NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247 AI HLV++AV L G+VT++D G LLT +N R++ L ++ I+ I Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQRSETSQPES 304 L+ +G N + V A+L+ +++ E Y P+ ++ S+ ++++S + P Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGG 308 Query: 305 AVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIATT 348 N P ++ S + ++ E SNYE++ T Sbjct: 309 VPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTK 368 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 + ++RLS+AVVVN L + + + +I + A G + +RGD++ + Sbjct: 369 MNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLNV 424 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 + F + + ++ F + ++ A +L+ L+ L A+R Sbjct: 425 VNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRR- 479 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 A+ + + + + AV L ++ + +NQ R+ + V Q Sbjct: 480 AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ-- 526 Query: 529 LRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 527 -RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|191168288|ref|ZP_03030081.1| flagellar M-ring protein FliF [Escherichia coli B7A] gi|190901660|gb|EDV61416.1| flagellar M-ring protein FliF [Escherichia coli B7A] Length = 552 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 136/567 (23%), Positives = 250/567 (44%), Gaps = 49/567 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + LI+A V +M+ A + +P Y L+ L D I L++ Sbjct: 13 WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVNQLTQM 70 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 71 NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247 AI HLV++AV L G+VT++D G LLT +N R++ L ++ I+ I Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQRSETSQPES 304 L+ +G N + V A+L+ +++ E Y P+ ++ S+ ++++S + P Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGG 308 Query: 305 AVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIATT 348 N P ++ S + ++ E SNYE++ T Sbjct: 309 VPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTK 368 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 + ++RLS+AVVVN L + + + +I + A G + +RGD++ + Sbjct: 369 MNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLNV 424 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 + F + + ++ F + ++ A +L+ L+ L A+R Sbjct: 425 VNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRR- 479 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 A+ + + + + AV L ++ + +NQ R+ + V Q Sbjct: 480 AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ-- 526 Query: 529 LRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 527 -RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|218549263|ref|YP_002383054.1| flagellar MS-ring protein [Escherichia fergusonii ATCC 35469] gi|218356804|emb|CAQ89432.1| flagellar basal-body MS-ring and collar protein [Escherichia fergusonii ATCC 35469] gi|325497680|gb|EGC95539.1| flagellar MS-ring protein [Escherichia fergusonii ECD227] Length = 552 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 131/572 (22%), Positives = 252/572 (44%), Gaps = 50/572 (8%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 + L++ + R +++ S + + +A + +P Y L+ L D I Sbjct: 9 KSLEWLNRLRANPRIPLIVAGS---AAVAVIVALILWAKAPDYRTLFSNLSDQDGGAIVS 65 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F Sbjct: 66 QLTQMNIPYRFSEVSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQF 123 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 124 SEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRAL 183 Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIE 242 AI HLV++AV L G+VT++D +G LLT +N R++ L ++ I+ Sbjct: 184 DEGQISAIVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKYASDVEGRIQ 243 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQRSET 299 I L+ +G N + V A+L+ +++ E Y P+ ++ S+ ++++S + Sbjct: 244 RRIEAILSPIVGNGNVHAQVTAQLDFASKEQTEEQYRPNGDQSQATLRSRQVNESEQSGS 303 Query: 300 SQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTK 343 P N P ++ S + ++ E SNYE++ Sbjct: 304 GYPGGVPGALSNQPAPANSAPISTPPANQNNRQQQTSTSSNSGPRSTQRNETSNYEVDRT 363 Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403 T + ++RLS+AVVVN + + +I + A G + +RG Sbjct: 364 IRHTKMNVGDVQRLSVAVVVNYKATPDGKPL----PLSAEQMKQIEDLTREAMGFSEKRG 419 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 D++ + + F + + G + + +++A +L+ L+ L A+R Sbjct: 420 DSLNVVNSPFNTSD-ESGGELPFWQQQVFIDQ---LLSAGRWLLVLLVAWLLWRKAVRPQ 475 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 + + + + + AV L ++ + +NQ R+++ + Sbjct: 476 LTRR-VEAVKAVQQQAQARQEVEDAVEVRLSKDEQLQQRRANQ-----------RMSAEM 523 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 Q R+ M + + A ++R+W ++ E Sbjct: 524 MSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|323948358|gb|EGB44345.1| flagellar M-ring protein FliF [Escherichia coli H120] Length = 552 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 136/567 (23%), Positives = 251/567 (44%), Gaps = 49/567 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + LI+A V +M+ A + +P Y L+ L D I L++ Sbjct: 13 WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R+S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 71 NIPYRVSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247 AI HLV++AV L G+VT++D G LLT +N R++ L ++ I+ I Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQRSETSQPES 304 L+ +G N + V A+L+ +++ E Y P+ ++ S+ ++++S + P Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGG 308 Query: 305 AVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIATT 348 N P ++ S + ++ E SNYE++ T Sbjct: 309 VPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTK 368 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 + ++RLS+AVVVN L + + + +I + A G + +RGD++ + Sbjct: 369 MNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLNV 424 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 + F + + ++ F + ++ A +L+ L+ L A+R Sbjct: 425 VNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRR- 479 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 A+ + + + + AV L ++ + +NQ R+ + V Q Sbjct: 480 AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ-- 526 Query: 529 LRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 527 -RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|331683490|ref|ZP_08384091.1| flagellar M-ring protein FliF [Escherichia coli H299] gi|331079705|gb|EGI50902.1| flagellar M-ring protein FliF [Escherichia coli H299] Length = 552 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 134/573 (23%), Positives = 253/573 (44%), Gaps = 52/573 (9%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 + L++ + + +++ S + + +A + +P Y L+ L D I Sbjct: 9 KSLEWLNRLRANPKIPLIVTGS---AAVAVMVALILWAKTPDYRTLFSNLSDQDGGAIVS 65 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F Sbjct: 66 QLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQF 123 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 124 SEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRAL 183 Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIE 242 AI HLV++AV L G+VT++D G LLT +N R++ L ++ I+ Sbjct: 184 DKGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQ 243 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSE 298 I L+ +G N + V A+L+ +++ E Y P+ RS +L ++++S Sbjct: 244 RRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSG 302 Query: 299 TSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINT 342 + P N P ++ S + ++ E SNYE++ Sbjct: 303 SGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDR 362 Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402 T + ++RLS+AVVVN L + + + +I + A G + +R Sbjct: 363 TIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEALTREAMGFSEKR 418 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 GD++ + + F + + ++ F + ++ A +L+ L+ L A+R Sbjct: 419 GDSLNVVNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRP 474 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 A+ + + + + AV L ++ + +NQ R+ + Sbjct: 475 QLTRR-AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAE 522 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 V Q R+ + + + A ++R+W ++ E Sbjct: 523 VMSQ---RIREISDNDPRVVALVIRQWINNDHE 552 >gi|300818642|ref|ZP_07098850.1| flagellar M-ring protein FliF [Escherichia coli MS 107-1] gi|300528814|gb|EFK49876.1| flagellar M-ring protein FliF [Escherichia coli MS 107-1] Length = 552 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 136/567 (23%), Positives = 251/567 (44%), Gaps = 49/567 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + LI+A V +M+ A + +P Y L+ L D I L++ Sbjct: 13 WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R+S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 71 NIPYRVSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247 AI HLV++AV L G+VT++D G LLT +N R++ L ++ I+ I Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQRSETSQPES 304 L+ +G N + V A+L+ +++ E Y P+ ++ S+ ++++S + P Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGG 308 Query: 305 AVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIATT 348 N P ++ S + ++ E SNYE++ T Sbjct: 309 VPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTK 368 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 + ++RLS+AVVVN L + + + +I + A G + +RGD++ + Sbjct: 369 MNVGDVQRLSVAVVVNYKTLPDGK----PVPLSNEQMKQIEDLTREAMGFSEKRGDSLNV 424 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 + F + + ++ F + ++ A +L+ L+ L A+R Sbjct: 425 VNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRR- 479 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 A+ + + + + AV L ++ + +NQ R+ + V Q Sbjct: 480 AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ-- 526 Query: 529 LRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 527 -RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|238798572|ref|ZP_04642049.1| Flagellar M-ring protein [Yersinia mollaretii ATCC 43969] gi|238717592|gb|EEQ09431.1| Flagellar M-ring protein [Yersinia mollaretii ATCC 43969] Length = 572 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 131/551 (23%), Positives = 236/551 (42%), Gaps = 61/551 (11%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 + SP Y LY L D I L++ NI +R +DNG ++ +P+ V + R+ LA Sbjct: 45 MLWAKSPDYRVLYSNLSDRDGGEIVTQLTQLNIPYRFADNGGALLIPAEKVHETRLRLAQ 104 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 QGLP + G+EL D+ FG++ F +++ RALEGE+ARTI ++ ++ RVH+ MP Sbjct: 105 QGLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIGTLGPVLNVRVHLAMP 162 Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + PTASV + AI ++V+++V L G+VTV+D TG+LL Sbjct: 163 KPSLFVREQKSPTASVTLALQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLL 222 Query: 218 TANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 T ++ R++ L +++ + I LA +G N + V A+++ +++ + Sbjct: 223 TQSDSAGRDLNAAQLKFTNEVENRFQRRIETILAPMVGNGNVHAQVTAQVDFASREQTDE 282 Query: 277 VYDPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMP---HVSDRKVPLP------- 323 Y P+ + S+ SE S N P V+ +VP P Sbjct: 283 EYKPNQAANQGAVRSQQTSNSEQLGGSNVGGVPGALSNQPSATPVAPIEVPQPAPAAGAA 342 Query: 324 ---------------------RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 + + + ++ +N+E++ T ++RLS+AVV Sbjct: 343 GATANNANAANRPAATTAARSTATSSNSRHDQTTNFEVDRTIRHTQQQAGIVQRLSVAVV 402 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 VN G LA++ + A G ++ RGDT+ + + F + Sbjct: 403 VNYGSDKAGK----PVALSKDQLAQVESLTREAMGFSTDRGDTLNVVNTPFNATDDGSGS 458 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482 ++ F ++NA +L+ L+ L +R + I + + S+ S Sbjct: 459 SLPFWQQQSF---FDQLLNAGRYLLILLVAWILWRKLVRPM--ITKKQIADKAAASVNSM 513 Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542 + T + +AL N Q R+++ V Q R+ + + + Sbjct: 514 VQTAQTAETVKQSKEELALRKKN----------QQRVSAEVQAQ---RIRELADKDPRIV 560 Query: 543 AKILRKWARSE 553 A ++R+W ++ Sbjct: 561 ALVIRQWMSND 571 >gi|299068777|emb|CBJ40017.1| FliF: Flagellar biosynthesis protein, M-ring protein, Belongs to the fliF family [Ralstonia solanacearum CMR15] Length = 611 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 132/555 (23%), Positives = 240/555 (43%), Gaps = 49/555 (8%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 + +P Y LY + SD I AL + N+ +R +D GS+I VP + V +AR+ LAA Sbjct: 65 TLWSRAPDYRVLYSNVADSDGGAIIAALQQMNVPYRFADGGSAIMVPEANVHEARLKLAA 124 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 QGLP +G+EL + FG + F++++ RALEGE+ARTIQ++ + +ARVH+ + Sbjct: 125 QGLPKGGL-AGFELME-NQKFGTSQFVEQVNYQRALEGELARTIQAMQEVQSARVHLALS 182 Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + +P+ASV+++ + +AI HL+A++VP+L + +VTV+D +G+LL Sbjct: 183 KPSVFVREQVKPSASVLLKLYPGRMLDRSQVQAIGHLLASSVPDLPLANVTVVDQSGRLL 242 Query: 218 TA--NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 +A + + L+ V+ I+ I L LG DN R+ V A++++D + Sbjct: 243 SAAFQDNASGLDPTQLNYVRDIEQGYIKRIEAILGPVLGDDNVRAQVTADVDLDNTEQMA 302 Query: 276 IVY----DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPL--------- 322 Y DP + RS S+ Q +Q N P + R +P Sbjct: 303 ETYRPNQDPANGAVRSTHTSESTQNKAGAQ-GGVPGALSNQPPTAPRMLPTAPAPAAQQA 361 Query: 323 -----------------------PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + + ++ +NYE++ T + RLS+ Sbjct: 362 AAGQNGQNGQNGQQQGAAGTGQAAANSVESSARDITTNYEVDKTVRRTRAAVGTVRRLSV 421 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AVVVN + + D+ + ++N +V A G +++RGD++ + + F Sbjct: 422 AVVVNYRADGK-----TWKPLSDAEMTKLNALVKDAVGYDAKRGDSVNVVNSQFSGTLPT 476 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL-RRLHNIDDAKKGEVGGKS 478 + + + + + +G L++ F + L R ++ D+ G+ Sbjct: 477 SKDDLPLWKQPEMIHYAIQAAKYGALAIGFLILVFAVIRPLIRSMNKKDEPATATFVGRE 536 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 P + S++ D L S +Q + + + N Sbjct: 537 GEDPNAPIITGAAAPAGPELEGPSSASIDGDDIPEELPQLKQSRDFEQKLETMRRVAQQN 596 Query: 539 EERFAKILRKWARSE 553 A ++++W +E Sbjct: 597 PRAVAAVIKQWVSNE 611 >gi|300923899|ref|ZP_07139914.1| flagellar M-ring protein FliF [Escherichia coli MS 182-1] gi|300419862|gb|EFK03173.1| flagellar M-ring protein FliF [Escherichia coli MS 182-1] Length = 552 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 136/567 (23%), Positives = 251/567 (44%), Gaps = 49/567 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + LI+A V +M+ A + +P Y L+ L D I L++ Sbjct: 13 WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R+S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 71 NIPYRVSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 129 YQRALEGELSRTIETIGPVKEARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247 AI HLV++AV L G+VT++D G LLT +N R++ L ++ I+ I Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQRSETSQPES 304 L+ +G N + V A+L+ +++ E Y P+ ++ S+ ++++S + P Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGG 308 Query: 305 AVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIATT 348 N P ++ S + ++ E SNYE++ T Sbjct: 309 VPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTK 368 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 + ++RLS+AVVVN L + + + +I + A G + +RGD++ + Sbjct: 369 MNVGDVQRLSVAVVVNYKTLPDGK----PVPLSNEQMKQIEDLTREAMGFSEKRGDSLNV 424 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 + F + + ++ F + ++ A +L+ L+ L A+R Sbjct: 425 VNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRR- 479 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 A+ + + + + AV L ++ + +NQ R+ + V Q Sbjct: 480 AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ-- 526 Query: 529 LRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 527 -RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|260844337|ref|YP_003222115.1| flagellar basal-body MS-ring and collar protein FliF [Escherichia coli O103:H2 str. 12009] gi|257759484|dbj|BAI30981.1| flagellar basal-body MS-ring and collar protein FliF [Escherichia coli O103:H2 str. 12009] Length = 552 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 138/568 (24%), Positives = 249/568 (43%), Gaps = 51/568 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + LI+A V +M+ A + +P Y L+ L D I L++ Sbjct: 13 WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 71 NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE++RTI +I + ARVH+ MP F + P+ASV + + Sbjct: 129 YQRALEGELSRTIATIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247 AI HLV++AV L G+VT++D G LLT +N R++ L ++ I+ I Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303 L+ +G N + V A+L+ +++ E Y P+ RS +L ++++S + P Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307 Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347 N P ++ S + ++ E SNYE++ T Sbjct: 308 GVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 + ++RLS+AVVVN L + + + +I + A G + +RGD++ Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMMQIEDLTREAMGFSEKRGDSLN 423 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + + F + + ++ F + ++ A +L+ L+ L A+R Sbjct: 424 VVNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRR 479 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 A+ + + + + AV L ++ + +NQ R+ + V Q Sbjct: 480 -AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526 Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|323968354|gb|EGB63761.1| flagellar M-ring protein FliF [Escherichia coli M863] gi|327253070|gb|EGE64724.1| flagellar M-ring protein FliF [Escherichia coli STEC_7v] Length = 552 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 135/567 (23%), Positives = 250/567 (44%), Gaps = 49/567 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + LI+A V +M+ A + +P Y L+ L D I L++ Sbjct: 13 WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 71 NIPYRFSEASGAIEVPAEKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE++RTI++I + ARVH+ +P F + P+ASV + + Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLALPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247 AI HLV++AV L G+VT++D G LLT +N R++ L ++ I+ I Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQRSETSQPES 304 L+ +G N + V A+L+ +++ E Y P+ ++ S+ ++++S + P Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDKSQAALRSRQLNESEQSGSGYPGG 308 Query: 305 AVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIATT 348 N P ++ S + ++ E SNYE++ T Sbjct: 309 VPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTK 368 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 + ++RLS+AVVVN L + + + +I + A G + +RGD++ + Sbjct: 369 MNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLNV 424 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 + F + + G + + +++A +L+ L+ L A+R Sbjct: 425 VNSPF-NSSDESGGELPFWQQQVFIDQ---LLSAGRWLLVLLVAWLLWRKAVRPQLTRR- 479 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 A+ + + + + AV L ++ + +NQ R+ + V Q Sbjct: 480 AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ-- 526 Query: 529 LRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 527 -RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|238794015|ref|ZP_04637633.1| Flagellar M-ring protein [Yersinia intermedia ATCC 29909] gi|238726647|gb|EEQ18183.1| Flagellar M-ring protein [Yersinia intermedia ATCC 29909] Length = 572 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 127/552 (23%), Positives = 231/552 (41%), Gaps = 63/552 (11%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 + SP Y LY L D I L++ NI +R +DNG ++ +P+ V + R+ LA Sbjct: 45 MLWAKSPDYRVLYSNLNDRDGGDIVTQLTQLNIPYRFADNGGALLIPADKVHETRLRLAQ 104 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 QGLP + G+EL D+ FG++ F +++ RALEGE++RTI ++ ++ RVH+ MP Sbjct: 105 QGLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELSRTISTLGPVMNVRVHLAMP 162 Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + PTASV + AI ++V+++V L G+VTV+D TG+LL Sbjct: 163 KPSLFVREQKSPTASVTLALQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLL 222 Query: 218 TANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 T ++ R++ L +++ + I LA +G N + V A+++ +++ + Sbjct: 223 TQSDSAGRDLNAAQLKFTNEVENRFQRRIETILAPMVGNGNVHAQVTAQVDFASREQTDE 282 Query: 277 VYDPDS----KVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV------------ 320 Y P+ RS ++S Q T+ N P + Sbjct: 283 EYKPNQAADKGAVRSQQVSTSEQLGGTNV-GGVPGALSNQPSATPVAPIETPQATPAAGA 341 Query: 321 -------------------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 + + + ++ +N+E++ T ++RLS+AV Sbjct: 342 AGATANNANAANRPATTTAAKSTATSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAV 401 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 VVN G LA++ + A G ++ RGDT+ + + F + Sbjct: 402 VVNYGSDKAGK----PVALTKDQLAQVESLTREAMGFSTDRGDTLNVVNTPFSATDDASG 457 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 T+ F ++NA +L+ L+ L +R + + SI + Sbjct: 458 NTLPFWQQQSF---FDQMLNAGRYLLILLVAWILWRKLVRPMMAKKQV--ADKAAASINN 512 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 + A + +AL N Q R+++ V Q R+ + + + Sbjct: 513 IVQTAVASENAKQSKEELALRKKN----------QQRVSAEVQAQ---RIRELADKDPRV 559 Query: 542 FAKILRKWARSE 553 A ++R+W ++ Sbjct: 560 VALVIRQWMSND 571 >gi|170024616|ref|YP_001721121.1| flagellar MS-ring protein [Yersinia pseudotuberculosis YPIII] gi|169751150|gb|ACA68668.1| flagellar M-ring protein FliF [Yersinia pseudotuberculosis YPIII] Length = 570 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 130/550 (23%), Positives = 235/550 (42%), Gaps = 61/550 (11%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 + SP Y LY L D I L++ NI +R +DNG ++ +P+ V + R+ LA Sbjct: 45 MLWAKSPDYRVLYSNLSDRDGGDIVTQLTQLNIPYRFADNGGALLIPAEKVHETRLRLAQ 104 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 QGLP + G+EL D+ FG++ F ++I RALEGE++RTI ++ ++ RVH+ MP Sbjct: 105 QGLPKGGA-VGFELLDQE-KFGISQFSEQINYQRALEGELSRTIGTLGPVLNVRVHLAMP 162 Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + PTASV + AI ++V+++V L G+VTV+D TG+LL Sbjct: 163 KPSLFVREQKSPTASVTLALQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLL 222 Query: 218 TANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 T ++ R++ L +++ + I LA +G N + V A+++ +++ + Sbjct: 223 TQSDSAGRDLNASQLKFTSEVENRYQRRIENILAPMVGNGNVHAQVTAQVDFASREQTDE 282 Query: 277 VYDP----DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV---PLP------ 323 Y P + RS ++S Q T+ N P V+ P P Sbjct: 283 EYKPNQAANQGAVRSQQVSTSEQLGGTNV-GGVPGALSNQPPVAPIAPIEIPQPAGAAAN 341 Query: 324 --------------------RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 ++ + + ++ +N+E++ T ++RLS+AVVV Sbjct: 342 NAAPANAAATANANTTATAAKASSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVV 401 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 N LA++ + A G ++ RGDT+ + + F + + Sbjct: 402 NYTSDKAGK----PIALSKDQLAQVESLTREAMGFSTVRGDTLNVVNTPFTASDDTRGSS 457 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 + F ++NA +L+ L+ L LR + + S+ + Sbjct: 458 LPFWQQQSF---FDQLLNAGRYLLILLVAWILWRKLLRPMLAKKQV--ADKAAASVNNIV 512 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 + A T + +AL N Q R+++ V Q R+ + + + A Sbjct: 513 QTAQAAETVKQSKEELALRKKN----------QQRVSAEVQAQ---RIRELADKDPRVVA 559 Query: 544 KILRKWARSE 553 ++R+W ++ Sbjct: 560 LVIRQWMSND 569 >gi|331657984|ref|ZP_08358946.1| flagellar M-ring protein FliF [Escherichia coli TA206] gi|331056232|gb|EGI28241.1| flagellar M-ring protein FliF [Escherichia coli TA206] Length = 552 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 135/573 (23%), Positives = 249/573 (43%), Gaps = 52/573 (9%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 + L++ + + +++ S + + +A + +P Y L+ L D I Sbjct: 9 KSLEWLNRLRANPKIPLIVTGS---AAVAVMVALILWAKAPDYRTLFSNLSDQDGGAIVS 65 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F Sbjct: 66 QLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQF 123 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 124 SEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRAL 183 Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIE 242 AI HLV++AV L G+VT++D G LLT +N R++ L ++ I+ Sbjct: 184 DEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQ 243 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSE 298 I L+ +G N + V A+L+ +++ E Y P+ RS +L ++++S Sbjct: 244 RRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSG 302 Query: 299 TSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINT 342 + P N P ++ S + ++ E SNYE++ Sbjct: 303 SGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDR 362 Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402 T + ++RLS+AVVVN L + + + +I + A G + +R Sbjct: 363 TIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEALTREAMGFSEKR 418 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 GD++ + + F + + G + ++ A +L+ L+ L A+R Sbjct: 419 GDSLNVVNSPF-NSSDESGGALPFWQQQAFIDQ---LLAAGRWLLVLLVAWLLWRKAVRP 474 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 V ++ + AV L ++ + +NQ R+ + Sbjct: 475 QLTRRAQAVKAVQQQAQAREE-VEDAVEVRLSKDEQLQQRRANQ-----------RLGAE 522 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 V Q R+ M + + A ++R+W ++ E Sbjct: 523 VMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|193222343|emb|CAL62027.2| Flagellar M-ring protein [Herminiimonas arsenicoxydans] Length = 562 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 133/573 (23%), Positives = 237/573 (41%), Gaps = 59/573 (10%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 + R +L + I + + + P Y L+ D I +L AN+ Sbjct: 17 NMAKSPNGRKFLLMVGVAAVIAVMIGLVLWGQKPEYRVLFSNFSDRDGGAIMTSLQAANV 76 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 ++ ++ G +I VP+ V + R+ LAA+GLP S G+EL + G++ F++++ Sbjct: 77 PYKFAEGGGAILVPADKVHEIRLKLAAEGLPKGGS-VGFELME-NQKLGVSQFLEQVNFQ 134 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS--VYKSAEA 190 RALEGE+AR+IQS+ + AARVH+ +P F + +PTASV++ + A Sbjct: 135 RALEGELARSIQSVGAVQAARVHLALPKASVFVRDQQKPTASVLLNLHAGRFLDQQQVSA 194 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLSIVQAIQHEIEMNINK 247 I HLVA++VP L +VT++D G LL+ N + L VQ +Q I I Sbjct: 195 IVHLVASSVPELSPKNVTIVDQAGNLLSENNKPAGTNTLDPSQLKYVQELQQNIAKRIES 254 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV----ERSIRLSKDAQRSE----- 298 + +G++N R+ A+++ T + +Y P+ RS + S+ S Sbjct: 255 IITPIVGLNNVRAEATADVDFSTSEQAAEIYKPNQVPSSATVRSQQTSESTNGSNNATGV 314 Query: 299 ----TSQPESAVTVEQNMPHVSDRKVPLPRSLENTD--------------KKEEQSNYEI 340 T+QP A T N + P + +++ +NYE+ Sbjct: 315 PGALTNQPAPAATAPLNTTPQTTAAPGTPGAPGTPGAPAATATAPQATPIQRDTTTNYEV 374 Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400 + L+RLS+AVVVN R+ G+ + + +I +V A G N Sbjct: 375 DKTIRYVQQPMGGLKRLSVAVVVNYKRVVGKDGKVSFLPLTEIEKTQITDLVREAMGYNK 434 Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460 RGDT+ + + F + + + + + +L+ +++ L L Sbjct: 435 DRGDTLNVVNSPFAGSNKEEAPKLPLWERPEA---IDMGMQGAKYLLLGIVLLILYFKVL 491 Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520 + L N L+PPP++ +G L+ + H + Q + Sbjct: 492 KPLLNK-------------LNPPPLALTDESGQPVGMAQELEEEVGPMGIHMHSYQQNLE 538 Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + + + + A I++ W +E Sbjct: 539 AA---------KELARQDPKVVANIVKAWVGNE 562 >gi|315296472|gb|EFU55769.1| flagellar M-ring protein FliF [Escherichia coli MS 16-3] Length = 552 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 137/568 (24%), Positives = 247/568 (43%), Gaps = 51/568 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + LI+A V +M+ A + +P Y L+ L D I L++ Sbjct: 13 WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R S+ +I VP+ V + R+ L QGLP + G+EL D+ FG++ F +++ Sbjct: 71 NIPYRFSEASGAIEVPADKVHELRLRLTQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRTLDEGQI 188 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247 AI HLV++AV L G+VT++D G LLT +N R++ L ++ I+ I Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303 L+ +G N + V A+L+ +++ E Y P+ RS +L ++++S + P Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307 Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347 N P ++ S + ++ E SNYE++ T Sbjct: 308 GVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 + ++RLS+AVVVN L + + + +I + A G + +RGD++ Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEALTREAMGFSEKRGDSLN 423 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + + F + + G + ++ A +L+ L+ L A+R Sbjct: 424 VVNSPF-NSSDESGGALPFWQQQAFIDQ---LLAAGRWLLVLLVAWLLWRKAVRPQLTRR 479 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 A+ + + + + AV L ++ + +NQ R+ + V Q Sbjct: 480 -AEAVKTVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526 Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|320182746|gb|EFW57630.1| Flagellar M-ring protein FliF [Shigella boydii ATCC 9905] Length = 552 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 135/567 (23%), Positives = 241/567 (42%), Gaps = 49/567 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + LI+A V +M+ A + +P Y L+ L D I L++ Sbjct: 13 WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 71 NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247 AI HLV++AV L G+VT++D G LLT +N R++ L ++ I+ I Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQRSETSQPES 304 L+ +G N + V A+L+ +++ E Y P+ ++ S+ ++++S + P Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGG 308 Query: 305 AVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIATT 348 N P ++ S + ++ E SNYE++ T Sbjct: 309 VPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTK 368 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 + ++RLS+AVVVN L + + + +I + A G + +RGD++ + Sbjct: 369 MNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLNV 424 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 + F + + + A LV LV LL L R Sbjct: 425 VNSPFNSSDESGGELPFWQQQAFIDQLLAAGRWLLVLLVAWLLWRKTVRPQLTRRAEAMK 484 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 A + + + + AV L ++ + +NQ + + + Sbjct: 485 AVQQQAQAREE-----VEDAVEVRLSKDEQLQQRRANQRLGTEVMS-------------- 525 Query: 529 LRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 526 QRIREMSDNDPRVVALVIRQWINNDHE 552 >gi|78047554|ref|YP_363729.1| flagellar MS-ring protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035984|emb|CAJ23675.1| flagellar biosynthesis lipoprotein FliF [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 574 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 115/568 (20%), Positives = 232/568 (40%), Gaps = 28/568 (4%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ Q+F SL TR L + ++I + + +A F+ P Y +LY L+ + Sbjct: 15 EKAGQWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAA 74 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L A I ++I +ISVP + AR+ LA GL + G+EL +K FG++ Sbjct: 75 DLLRTAQIPYKIDQATGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQ 134 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 F++ ALE E++RTI ++ + ARVH+ +P +F + +ASV++ Sbjct: 135 FVENARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQG 194 Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240 + +AI +LVA+++P++ VTV+D +G++L+ + + V+ + Sbjct: 195 LERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESS 254 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I + L G +++ + +Y+ + RS ++S + + Sbjct: 255 YNQRIRELLEPMTGPGRVNPETSVDMDFSVVEEARELYNGEPAKLRSEQVSDTSTSATG- 313 Query: 301 QPESAVTVEQNMPHV--------------SDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346 P+ N P + + K NYE++ Sbjct: 314 -PQGPPGATSNSPGQPPAPAVAGAPGTPAAANGQAAAPATPTESSKSATRNYELDRTLQH 372 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 T +++R+S+AV+++ G+ +Q + L I +V A G ++ RGDT+ Sbjct: 373 TRQPAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQAVGFDAARGDTV 432 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 ++ + F+ + + V N L LVG ++V L +R Sbjct: 433 SVMNAPFVREAVAGEEGPKWWEDP-------RVQNGLRLLVGAVVVLALLFGVVRPTLRQ 485 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 + + ++ D+ + +D ++ ++ I + + Sbjct: 486 LTGVTAVKDKQGKAGKDGTPQSADVRMVDEDDDLMPRLEEDTAQIGQDKKTPIALPDAYE 545 Query: 527 SDLRL-LHMIEINEERFAKILRKWARSE 553 +RL ++ + +R A++++ W SE Sbjct: 546 ERMRLAREAVKADSKRVAQVVKGWVASE 573 >gi|209919360|ref|YP_002293444.1| flagellar MS-ring protein [Escherichia coli SE11] gi|293446318|ref|ZP_06662740.1| flagellar M-ring protein FliF [Escherichia coli B088] gi|209912619|dbj|BAG77693.1| flagellar hook-basal body MS ring protein FliF [Escherichia coli SE11] gi|291323148|gb|EFE62576.1| flagellar M-ring protein FliF [Escherichia coli B088] Length = 552 Score = 415 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 138/568 (24%), Positives = 249/568 (43%), Gaps = 51/568 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + LI+A V +M+ A + +P Y L+ L D I L++ Sbjct: 13 WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 71 NIPYRFSEASGAIEVPAEKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE++RTI +I + ARVH+ MP F + P+ASV + + Sbjct: 129 YQRALEGELSRTIATIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247 AI HLV++AV L G+VT++D G LLT +N R++ L ++ I+ I Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303 L+ +G N + V A+L+ +++ E Y P+ RS +L ++++S + P Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307 Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347 N P ++ S + ++ E SNYE++ T Sbjct: 308 GVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 + ++RLS+AVVVN L + + + +I + A G + +RGD++ Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLN 423 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + + F + + ++ F + ++ A +L+ L+ L A+R Sbjct: 424 VVNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRR 479 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 A+ + + + + AV L ++ + +NQ R+ + V Q Sbjct: 480 -AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526 Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|309779486|ref|ZP_07674247.1| flagellar M-ring protein FliF [Ralstonia sp. 5_7_47FAA] gi|308921727|gb|EFP67363.1| flagellar M-ring protein FliF [Ralstonia sp. 5_7_47FAA] Length = 610 Score = 415 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 132/570 (23%), Positives = 247/570 (43%), Gaps = 49/570 (8%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 L++ + + AA + +P Y LY + SD I AL + N+ +R ++ G++ Sbjct: 51 LLMMIGGAALVAVIAAAMLWSRAPDYRVLYSNVSDSDGGAIIAALQQMNVPYRFAEGGTA 110 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP + V +AR+ LA+QGLP +G+EL + FG + F +++ RALEGE+ART Sbjct: 111 IMVPEASVHEARLKLASQGLPKGG-QAGFELME-NQKFGTSQFTEQVNYQRALEGELART 168 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVP 200 IQ++ + +ARVH+ M F + A+P+ASV+++ + +AI HLV+++VP Sbjct: 169 IQAMQEVQSARVHLAMTKPSVFVREQAKPSASVLLKLYPGRMLDRSQVQAIGHLVSSSVP 228 Query: 201 NLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNF 258 NL + +VTV+D +G+LL+++ + + LS V+ ++ I L +G DN Sbjct: 229 NLPLANVTVVDQSGRLLSSSFQDNASGLDPTQLSYVRDVEQGYIKRIEAILGPVVGEDNV 288 Query: 259 RSAVVAELNMDTQQIREIVY----DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPH 314 R+ V A++++D + Y DP + RS ++ Q +Q N P Sbjct: 289 RAQVTADVDLDNTEQMAESYRPNQDPANAAVRSTHTAEATQNKADAQ-GGVPGALSNQPP 347 Query: 315 VSDRKVPL------------------------------PRSLENTDKKEEQSNYEINTKS 344 + R +P S ++ ++ +NYE++ Sbjct: 348 TAPRMLPTAPAPASASQPAATGPNGQPQQVAAANTGGTAASGNSSSTRDTTTNYEVDKTV 407 Query: 345 IATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD 404 T + RLS+AVVVN + + ++ + ++N +V A G +++RGD Sbjct: 408 RRTRAAVGTVRRLSVAVVVNYRGDGK-----TWKPLSEAEMVKLNALVKDAVGFDAKRGD 462 Query: 405 TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 ++ + + F + + + + ++ L +G L++ F + R Sbjct: 463 SVNVVNSQFSGTLPMSKDDLPLWKQPDMIQYAIQAAKYLALAIGFLILVFAVIRPAIRSM 522 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS-RINSYV 523 DA P + ++ D L + N + Sbjct: 523 GEKDAPATPTFVGREGEDPNAPIITGAAASAGPELEGPAAGADSEELPDALPQLKNNDFE 582 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSE 553 K +R + + N A ++++W +E Sbjct: 583 KKLETMR--RVAQSNPRAVAAVIKQWVSNE 610 >gi|256022404|ref|ZP_05436269.1| flagellar MS-ring protein [Escherichia sp. 4_1_40B] gi|301029395|ref|ZP_07192489.1| flagellar M-ring protein FliF [Escherichia coli MS 196-1] gi|299877699|gb|EFI85910.1| flagellar M-ring protein FliF [Escherichia coli MS 196-1] Length = 552 Score = 415 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 134/573 (23%), Positives = 253/573 (44%), Gaps = 52/573 (9%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 + L++ + + +++ S + + +A + +P Y L+ L D I Sbjct: 9 KSLEWLNRLRANPKIPLIVTGS---AAVAVMVALILWAKTPDYRTLFSNLSDQDGGAIVS 65 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F Sbjct: 66 QLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQF 123 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 124 SEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRAL 183 Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIE 242 AI HLV++AV L G+VT++D G LLT +N R++ L ++ I+ Sbjct: 184 DEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQ 243 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSE 298 I L+ +G N + V A+L+ +++ E Y P+ RS +L ++++S Sbjct: 244 RRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSG 302 Query: 299 TSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINT 342 + P N P ++ S + ++ E SNYE++ Sbjct: 303 SGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDR 362 Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402 T + ++RLS+AVVVN L + + + +I + A G + +R Sbjct: 363 TIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEALTREAMGFSEKR 418 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 GD++ + + F + + ++ F + ++ A +L+ L+ L A+R Sbjct: 419 GDSLNVVNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRP 474 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 A+ + + + + AV L ++ + +NQ R+ + Sbjct: 475 QLTRR-AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAE 522 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 V Q R+ + + + A ++R+W ++ E Sbjct: 523 VMSQ---RIREISDNDPRVVALVIRQWINNDHE 552 >gi|323186814|gb|EFZ72134.1| flagellar M-ring protein FliF [Escherichia coli RN587/1] Length = 552 Score = 415 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 130/569 (22%), Positives = 233/569 (40%), Gaps = 53/569 (9%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + LI+A V +M+ A + +P Y L+ L D I L++ Sbjct: 13 WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 71 NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247 AI HLV++AV L G+VT++D G LLT +N R++ L ++ I+ I Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQRSETSQPES 304 L+ +G N + V A+L+ +++ E Y P+ ++ S+ ++++S + P Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDETQAALRSRQLNESEQSGSGYPGG 308 Query: 305 AVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIATT 348 N P ++ S + ++ E SNYE++ T Sbjct: 309 VPGALSNQPAPANNAPISTPPTNQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTK 368 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 + ++RLS+AVVVN L + + + +I + A G + +RGD++ + Sbjct: 369 MNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEALTREAMGFSEKRGDSLNV 424 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 + F + + G + L R L + Sbjct: 425 VNSPF-NSSDESGGALPFWQQQAFIDQL--------------------LAVGRWLLVLLV 463 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 A + T ++ + + S LQ R + Sbjct: 464 AWLLWRKAVRPQLTRRAEAVKTVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQRLGAEV 523 Query: 529 L--RLLHMIEINEERFAKILRKWARSEIE 555 + R+ M + + A ++R+W ++ E Sbjct: 524 MSQRIREMSDNDPRVVALVIRQWINNDHE 552 >gi|309795955|ref|ZP_07690368.1| flagellar M-ring protein FliF [Escherichia coli MS 145-7] gi|308120405|gb|EFO57667.1| flagellar M-ring protein FliF [Escherichia coli MS 145-7] Length = 552 Score = 415 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 138/568 (24%), Positives = 251/568 (44%), Gaps = 51/568 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + LI+A V +M+ A + +P Y L+ L D I L++ Sbjct: 13 WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 71 NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247 AI HLV++AV L +G+VT++D G LLT +N R++ L ++ I+ I Sbjct: 189 SAIVHLVSSAVAGLPLGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303 L+ +G N + V A+L+ +++ E Y P+ RS +L ++++S + P Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307 Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347 N P ++ S + ++ E SNYE++ T Sbjct: 308 GVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 + ++RLS+AVVVN L + + + +I + A G + +RGD++ Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLN 423 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + + F + + ++ F + ++ A +L+ L+ L A+R Sbjct: 424 VVNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRR 479 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 A+ + + + + AV L ++ + +NQ R+ + V Q Sbjct: 480 -AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526 Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|134095076|ref|YP_001100151.1| flagellar MS-ring protein [Herminiimonas arsenicoxydans] Length = 545 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 133/565 (23%), Positives = 236/565 (41%), Gaps = 59/565 (10%) Query: 21 RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80 R +L + I + + + P Y L+ D I +L AN+ ++ ++ G Sbjct: 8 RKFLLMVGVAAVIAVMIGLVLWGQKPEYRVLFSNFSDRDGGAIMTSLQAANVPYKFAEGG 67 Query: 81 SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140 +I VP+ V + R+ LAA+GLP S G+EL + G++ F++++ RALEGE+A Sbjct: 68 GAILVPADKVHEIRLKLAAEGLPKGGS-VGFELME-NQKLGVSQFLEQVNFQRALEGELA 125 Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS--VYKSAEAIRHLVAAA 198 R+IQS+ + AARVH+ +P F + +PTASV++ + AI HLVA++ Sbjct: 126 RSIQSVGAVQAARVHLALPKASVFVRDQQKPTASVLLNLHAGRFLDQQQVSAIVHLVASS 185 Query: 199 VPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255 VP L +VT++D G LL+ N + L VQ +Q I I + +G+ Sbjct: 186 VPELSPKNVTIVDQAGNLLSENNKPAGTNTLDPSQLKYVQELQQNIAKRIESIITPIVGL 245 Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKV----ERSIRLSKDAQRSE---------TSQP 302 +N R+ A+++ T + +Y P+ RS + S+ S T+QP Sbjct: 246 NNVRAEATADVDFSTSEQAAEIYKPNQVPSSATVRSQQTSESTNGSNNATGVPGALTNQP 305 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTD--------------KKEEQSNYEINTKSIATT 348 A T N + P + +++ +NYE++ Sbjct: 306 APAATAPLNTTPQTTAAPGTPGAPGTPGAPAATATAPQATPIQRDTTTNYEVDKTIRYVQ 365 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 L+RLS+AVVVN R+ G+ + + +I +V A G N RGDT+ + Sbjct: 366 QPMGGLKRLSVAVVVNYKRVVGKDGKVSFLPLTEIEKTQITDLVREAMGYNKDRGDTLNV 425 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 + F + + + + + +L+ +++ L L+ L N Sbjct: 426 VNSPFAGSNKEEAPKLPLWERPEA---IDMGMQGAKYLLLGIVLLILYFKVLKPLLNK-- 480 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 L+PPP++ +G L+ + H + Q + + Sbjct: 481 -----------LNPPPLALTDESGQPVGMAQELEEEVGPMGIHMHSYQQNLEAA------ 523 Query: 529 LRLLHMIEINEERFAKILRKWARSE 553 + + + A I++ W +E Sbjct: 524 ---KELARQDPKVVANIVKAWVGNE 545 >gi|218695543|ref|YP_002403210.1| flagellar MS-ring protein [Escherichia coli 55989] gi|218352275|emb|CAU98032.1| flagellar basal-body MS-ring and collar protein [Escherichia coli 55989] Length = 552 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 134/573 (23%), Positives = 253/573 (44%), Gaps = 52/573 (9%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 + L++ + + +++ S + + +A + +P Y L+ L D I Sbjct: 9 KSLEWLNRLRANPKIPLIVTGS---AAVAVMVALILWAKTPDYRTLFSNLSDQDGGAIVS 65 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F Sbjct: 66 QLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQF 123 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 124 SEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRAL 183 Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIE 242 AI HLV++AV L G+VT++D G LLT +N R++ L ++ I+ Sbjct: 184 DEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQ 243 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSE 298 I L+ +G N + V A+L+ +++ E Y P+ RS +L ++++S Sbjct: 244 RRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSG 302 Query: 299 TSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINT 342 + P N P ++ S + ++ E SNYE++ Sbjct: 303 SGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDR 362 Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402 T + ++RLS+AVVVN L + + + +I + A G + +R Sbjct: 363 TIRHTKMNEGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEALTREAMGFSEKR 418 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 GD++ + + F + + ++ F + ++ A +L+ L+ L A+R Sbjct: 419 GDSLNVVNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRP 474 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 A+ + + + + AV L ++ + +NQ R+ + Sbjct: 475 QLTRR-AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAE 522 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 V Q R+ + + + A ++R+W ++ E Sbjct: 523 VMSQ---RIREISDNDPRVVALVIRQWINNDHE 552 >gi|156933442|ref|YP_001437358.1| flagellar MS-ring protein [Cronobacter sakazakii ATCC BAA-894] gi|156531696|gb|ABU76522.1| hypothetical protein ESA_01260 [Cronobacter sakazakii ATCC BAA-894] Length = 565 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 134/546 (24%), Positives = 237/546 (43%), Gaps = 59/546 (10%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + P Y LY L D I L++ NI + +DNG+SI VP+ V R+ LA QG Sbjct: 46 WAKQPEYRVLYSNLSDQDGGAIVTQLTQMNIPYNFADNGASIMVPAEKVYDLRLRLAQQG 105 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + ARVH+ MP Sbjct: 106 LPKGGA-VGFELMDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKNARVHLAMPKP 163 Query: 162 GSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT- 218 F + P+ASV + AI H+V++AV L G+VT++D TG+LLT Sbjct: 164 SLFVREQKSPSASVTLNLQPGRALDDGQVAAIVHMVSSAVAGLPPGNVTLVDQTGRLLTQ 223 Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 + R++ L ++ I+ I LA +G N + V A+++ ++ E Y Sbjct: 224 SGTGARDLNDAQLKYASDVEGRIQRRIESILAPIVGTGNVHAQVTAQIDFSNKEQTEEQY 283 Query: 279 DPDSK----VERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRK--------------- 319 P+S RS +L+ + Q + P N P ++ Sbjct: 284 RPNSDPSQMAVRSRQLNTNDQVG-GAYPGGVPGALSNQPAPANSAPIDAPAGQNNGQNAN 342 Query: 320 -----------VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368 S ++ +++E +NYE++ T + ++RLS+AVVVN +L Sbjct: 343 GQNAQRTQSTSTAGASSGPHSSQRDETTNYEVDRTIRHTKMNVGDVQRLSVAVVVNYRQL 402 Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSF 428 G L +I + A G + +RGDT+ + + F + + ++ F Sbjct: 403 ----GNGKPLALTAEQLKQIEDLTREAMGYSDKRGDTLNVVNSQFTAS---DESGGELPF 455 Query: 429 MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSA 488 + +++A +LV ++ L A+R + V Sbjct: 456 WKQQA-FIDQLLSAGRWLVVLIVAWLLWRKAVRPQLQRRAEEVKRVQEMQ---------- 504 Query: 489 VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRK 548 +++ + ++D + R R+++ V Q R+ M + + A ++R+ Sbjct: 505 -QQRKEVEESVEVR-LSKDEQTQQRRANQRLSAEVMSQ---RIREMSDNDPRVVALVIRQ 559 Query: 549 WARSEI 554 W +E+ Sbjct: 560 WMSNEL 565 >gi|324013493|gb|EGB82712.1| flagellar M-ring protein FliF [Escherichia coli MS 60-1] Length = 552 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 137/568 (24%), Positives = 248/568 (43%), Gaps = 51/568 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + LI+A V +M+ A + +P Y L+ + D I L++ Sbjct: 13 WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNISDQDGGAIVSQLTQM 70 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 71 NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247 AI HLV++AV L G+VT++D G LLT +N R++ L ++ I+ I Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303 L+ +G N + V A+L+ +++ E Y P+ RS +L ++++S + P Sbjct: 249 ILSPIVGNGNIHAQVSAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307 Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347 N P ++ S + ++ E SNYE++ T Sbjct: 308 GVPGALSNQPAPANNAPISTPPTNQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 + ++RLS+AVVVN L + + + +I + A G + +RGD++ Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEALTREAMGFSEKRGDSLN 423 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + + F + + G + ++ A +L+ L+ L A+R Sbjct: 424 VVNSPF-NSSDESGGALPFWQQQAFIDQ---LLAAGRWLLVLLVAWLLWRKAVRPQLTRR 479 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 A+ + + + + AV L ++ + +NQ R+ + V Q Sbjct: 480 -AEAVKTVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526 Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|307138605|ref|ZP_07497961.1| flagellar MS-ring protein [Escherichia coli H736] gi|331642559|ref|ZP_08343694.1| flagellar M-ring protein FliF [Escherichia coli H736] gi|331039357|gb|EGI11577.1| flagellar M-ring protein FliF [Escherichia coli H736] Length = 552 Score = 415 bits (1066), Expect = e-113, Method: Composition-based stats. Identities = 134/573 (23%), Positives = 253/573 (44%), Gaps = 52/573 (9%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 + L++ + + +++ S + + +A + +P Y L+ L D I Sbjct: 9 KSLEWLNRLRANPKIPLIVTGS---AAVAVMVALILWAKTPDYRTLFSNLSDQDGGAIVS 65 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F Sbjct: 66 QLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQF 123 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 124 SEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRAL 183 Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIE 242 AI HLV++AV L G+VT++D G LLT +N R++ L ++ I+ Sbjct: 184 DEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQ 243 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSE 298 I L+ +G N + V A+L+ +++ E Y P+ RS +L ++++S Sbjct: 244 RRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSG 302 Query: 299 TSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINT 342 + P N P ++ S + ++ E SNYE++ Sbjct: 303 SGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDR 362 Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402 T + ++RLS+AVVVN L + + + +I + A G + +R Sbjct: 363 TIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEALAREAMGFSEKR 418 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 GD++ + + F + + ++ F + ++ A +L+ L+ L A+R Sbjct: 419 GDSLNVVNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRP 474 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 A+ + + + + AV L ++ + +NQ R+ + Sbjct: 475 QLTRR-AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAE 522 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 V Q R+ + + + A ++R+W ++ E Sbjct: 523 VMSQ---RIREISDNDPRVVALVIRQWINNDHE 552 >gi|21242698|ref|NP_642280.1| flagellar MS-ring protein [Xanthomonas axonopodis pv. citri str. 306] gi|21108171|gb|AAM36816.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306] Length = 574 Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 115/568 (20%), Positives = 233/568 (41%), Gaps = 28/568 (4%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ Q+F SL TR L + ++I + + +A F+ P Y +LY L+ + Sbjct: 15 EKAGQWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAA 74 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L A I ++I +ISVP + AR+ LA GL + G+EL +K FG++ Sbjct: 75 DLLRTAQIPYKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQ 134 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 F++ ALE E++RTI ++ + ARVH+ +P +F + +ASV++ Sbjct: 135 FVENARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQG 194 Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240 + +AI +LVA+++P++ VTV+D +G++L+ + + V+ + Sbjct: 195 LERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESS 254 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I + L G +++ + +Y+ + RS ++S + + Sbjct: 255 YNQRIRELLEPMTGPGRVNPETSVDMDFSVVEEARELYNGEPAKLRSEQVSDTSTSATG- 313 Query: 301 QPESAVTVEQNMPHV--------------SDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346 P+ N P + + K NYE++ Sbjct: 314 -PQGPPGATSNSPGQPPAPAVAGAPGTPAAANGQAAAPATPTESSKSATRNYELDRTLQH 372 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 T +++R+S+AV+++ G+ +Q + L I +V A G ++ RGDT+ Sbjct: 373 TRQPAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQAVGFDAARGDTV 432 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 ++ + F+ + + V N L LVG ++V L +R Sbjct: 433 SVMNAPFVREAVAGEEGPKWWEDP-------RVQNGLRLLVGAVVVLALLFGVVRPTLRQ 485 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 + + ++ +D+ + +D ++ ++ I + + Sbjct: 486 LTGVTAVKDKQGKAGKDGTPQSADVRMVDDDDDLMPRLEEDTAQIGQDKKTPIALPDAYE 545 Query: 527 SDLRL-LHMIEINEERFAKILRKWARSE 553 +RL ++ + +R A++++ W SE Sbjct: 546 ERMRLAREAVKADSKRVAQVVKGWVASE 573 >gi|283785708|ref|YP_003365573.1| flagellar M-ring protein [Citrobacter rodentium ICC168] gi|282949162|emb|CBG88770.1| flagellar M-ring protein [Citrobacter rodentium ICC168] Length = 560 Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 134/575 (23%), Positives = 241/575 (41%), Gaps = 55/575 (9%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L++ + + ++I S + + +A + SP Y L+ L D I L Sbjct: 14 LEWLNRLRANPKIPLIIAGS---AAVAIIVAMVLWAKSPDYRTLFSNLSDQDGGAIVTQL 70 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 ++ NI +R ++ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F + Sbjct: 71 TQMNIPYRFTEGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSE 128 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 ++ RALEGE+ARTI+++ + ARVH+ MP F + P+ASV I Sbjct: 129 QVNYQRALEGELARTIETLGPVRRARVHLAMPKPSLFVREQKSPSASVTINLEPGRALDE 188 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-NILGKSLSIVQAIQHEIEMN 244 A+ HLV++AV L G+VT++D +G+LLT + ++ L +++ I+ Sbjct: 189 GQISAVVHLVSSAVAGLPPGNVTLVDQSGRLLTQSNTSSRDLNDAQLKYASDVENRIQRR 248 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---TSQ 301 I L+ +G N + V A+L+ ++ E Y P+ ++ S+ SE + Sbjct: 249 IESILSPIVGNGNVHAQVTAQLDFANKEQTEEQYRPNGDASQAALRSRQVNESEQIGSGL 308 Query: 302 PESAVTVEQNMPHVSDRKV---------------------PLPRSLENTDKKEEQSNYEI 340 P N P ++ ++ E SNYE+ Sbjct: 309 PGGVPGALSNQPAPANAAPITTPPANQQNAQNGQNAQQTSTNNAVGPRNTQRNETSNYEV 368 Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400 + T + ++RLS+AVVVN ++ + +I + A G + Sbjct: 369 DRTIRHTKMNVGDIQRLSVAVVVNYKTPSDGKPL----PLTADQMKQIENLTREAMGFSD 424 Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460 +RGDT+ + + F N+G V + +A +L+ L+ L A+ Sbjct: 425 KRGDTLNVVNSPFSATD-ENAGEVPFWKQQFFIEQ---LFSAGRWLLVLLVGWLLWRKAV 480 Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520 R A++ + + AV L ++ +NQ R+ Sbjct: 481 RPQLQRR-AEEAKAAREREQLRQETKEAVEVRLSKDEQTQQQRANQ-----------RLG 528 Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + V Q R+ M + + A ++R+W ++ E Sbjct: 529 AEVLSQ---RIREMSDNDPRVVALVIRQWMSNDHE 560 >gi|115522990|ref|YP_779901.1| flagellar MS-ring protein [Rhodopseudomonas palustris BisA53] gi|115516937|gb|ABJ04921.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris BisA53] Length = 535 Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 145/554 (26%), Positives = 242/554 (43%), Gaps = 26/554 (4%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++ L+ F K LG R++ + +V I F V +P L+ L V D + I Sbjct: 1 MEGLVNFLKG---LGAARLMAMIAVTAALIGFFAFVILRVTTPQMTTLFTDLSVEDSSGI 57 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L I F I + GS I VP V + R+ LA GLP GYE+FDK + G T Sbjct: 58 IKDLERQAIPFEIRNEGSVIMVPKDKVTRLRMKLAEAGLPKGGG-VGYEIFDKSEALGST 116 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 SF+Q I +RALEGE+ARTI++I I AARVH+V+P+ F + P+AS+++R Sbjct: 117 SFVQNINHLRALEGELARTIRAIDRIQAARVHLVLPERPLFSRETPEPSASIVLRVRGAL 176 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEI 241 + AIRH+VA+AV L V+++D G+LL A + + Sbjct: 177 EPQQVRAIRHVVASAVNGLKPQRVSIVDEAGQLLADGAAGDPSTEGVTGDERRAAFEKRM 236 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + +++ +G R + A+ + + +DP+ +V R S++ + + Sbjct: 237 RNQVEAIVSSVVGTGRARVQLTADFDYNKITQTSDKFDPEGRVLR-SSQSREESSATLNP 295 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 + VTV +P R + + K EE +NYEI+ + + ++ R+S+AV Sbjct: 296 TDGQVTVNNELPGAQGGAGAAAR--DQSKKSEETNNYEISRVTKTEVTEVGRVNRVSVAV 353 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL--- 418 +V+ G Q + L I +V +A G + +RGD + I ++ F E Sbjct: 354 LVDGLYNKNDKGELVYQERSKEELDRIAALVRSAIGFDQKRGDQVEIVNLRFAEGPAVVP 413 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 N T + + VI V ++ ++V F+ + L R + Sbjct: 414 INEPTGILGMLKFTKDDVMYVIELGVMMLLGMVVIFMVIRPLVRRILAAEPGS------- 466 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 P A+T G + ++ D S +++ V QS R+ + + N Sbjct: 467 ----PTALPALTDGTV---SVGADGQPLPTPGPSMIDIAQVQGQVHAQSVHRVGELADRN 519 Query: 539 EERFAKILRKWARS 552 A I+R+W + Sbjct: 520 PNETAAIIRQWLQE 533 >gi|300693364|ref|YP_003749337.1| flif: flagellar biosynthesis protein, m-ring protein, belongs to the flif family [Ralstonia solanacearum PSI07] gi|299075401|emb|CBJ34696.1| FliF: Flagellar biosynthesis protein, M-ring protein, Belongs to the fliF family [Ralstonia solanacearum PSI07] Length = 611 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 141/556 (25%), Positives = 246/556 (44%), Gaps = 51/556 (9%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 + +P+Y LY + SD I AL + N+ +R +D GS+I VP + V +AR+ LAA Sbjct: 65 MLWSRTPNYGVLYSNVADSDGGAIIAALQQMNVPYRFADGGSAIMVPEANVHEARLKLAA 124 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 QGLP +G+EL + FG + F +++ RALEGE+ARTIQ++ + +ARVH+ + Sbjct: 125 QGLPKGGL-AGFELME-NQKFGTSQFAEQVNYQRALEGELARTIQAMQEVQSARVHLALS 182 Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + A+P+ASV+++ + +AI HLV+++VPNL + +VTV+D +G+LL Sbjct: 183 KPSVFVREQAKPSASVLLKLYPGRMLDRSQVQAIGHLVSSSVPNLPLANVTVVDQSGRLL 242 Query: 218 TAN--EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 +++ + + L+ V+ I+ I L LG DN R+ V A++++D + Sbjct: 243 SSSFQDNASGLDPTQLNYVRDIEQGYIKRIEAILGPVLGEDNVRAQVTADVDLDNTEQMA 302 Query: 276 IVY----DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE---- 327 Y DP + V RS S+ Q +Q N P + R +P + Sbjct: 303 ETYRPNQDPSNGVVRSTHTSESTQNKAGAQ-GGVPGALSNQPPSAPRMLPTAPAPASQQA 361 Query: 328 ----------------------------NTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + ++ NYE++ T + RLS+ Sbjct: 362 AAGQNGQNGQNGQQQAAAATGQTAANGVESSARDTTINYEVDKTVRRTRAAVGTVRRLSV 421 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AVVVN + A + D+ + ++N +V A G +++RGD++ + + F Sbjct: 422 AVVVNYRADGK-----AWKPLSDAEMVKLNALVKDAVGYDAKRGDSVNVVNSQFSGTLPV 476 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD--AKKGEVGGK 477 + + + + +G L++ F + L R N D A VG + Sbjct: 477 AKDDLPLWKQPEMIHYAIQAAKYGALAIGFLILVFAVIRPLIRSMNKKDEHAAATFVGRE 536 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 PI + P +S Q Q ++N + +Q + + + Sbjct: 537 GEDPNAPIITGAAAPAGPELEGPSAASAQGDEVQIEVPQLKMN-HDFEQKLETMRRIAQQ 595 Query: 538 NEERFAKILRKWARSE 553 N A ++++W SE Sbjct: 596 NPRAVAAVVKQWVSSE 611 >gi|167561148|ref|ZP_02354064.1| flagellar MS-ring protein [Burkholderia oklahomensis EO147] Length = 490 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 117/443 (26%), Positives = 198/443 (44%), Gaps = 15/443 (3%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G ++ VP++ V + R+ LA+ G Sbjct: 50 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAVLVPANQVHETRLKLASIG 109 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RTI+SI+ + +ARVH+ +P Sbjct: 110 LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTIESINTVRSARVHLAIPKP 167 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ V + A+ +V+++VP++ +VT++D G LLT Sbjct: 168 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 227 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 228 TASASGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 287 Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH--------VSDRKVPLPRSLEN 328 P+ +++ S+ + S N P S+ + P + Sbjct: 288 PNGAPQQTAIRSQQTSTATELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 347 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 +D+K+ +NYE++ ++RLS+AVVVN + GR Q LA+I Sbjct: 348 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPAADAKGRVTMQPLTAEKLAQI 407 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G + +RGD++ + + F + D++ V Sbjct: 408 QQLVKDAMGYDEKRGDSVNVVNSAFSTAADPFADLPWWRQPDMIELGKDIAKWLGVAAAA 467 Query: 449 TLLVTFLGLHALRRLHNIDDAKK 471 L ALRR Sbjct: 468 AALYFMFVRPALRRAFPPPAEPA 490 >gi|209884352|ref|YP_002288208.1| flagellar M-ring protein FliF [Oligotropha carboxidovorans OM5] gi|209872548|gb|ACI92344.1| flagellar M-ring protein FliF [Oligotropha carboxidovorans OM5] Length = 537 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 129/554 (23%), Positives = 242/554 (43%), Gaps = 25/554 (4%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + L+ F + SLG R+ + +V + + F V +P LY L D + Sbjct: 1 MQGLVSFIR---SLGAARLAAMLAVAMALLGFFGFVILRVTAPQMITLYTDLGYDDAAGV 57 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L I + + ++G+ I VP V + R+ LA GLP S GYE+FDK + G T Sbjct: 58 IKELDRQGIPYEMKNDGAIIMVPKDKVTRLRMKLAESGLPKGSG-VGYEIFDKSETLGST 116 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 SF+Q + +RALEGE+ARTI++I I RVH+V+P+ F + P+A++++R Sbjct: 117 SFVQNVNHLRALEGELARTIKAIDRIQGVRVHLVLPERPLFSREKPEPSAAIVVRVRGAL 176 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI--QHEI 241 + AIRHLVA++V L V+++D G+LL + N +G + + + ++ + Sbjct: 177 EAQQVRAIRHLVASSVNGLKPQRVSIVDENGQLLADGSGDANGMGDVGADERRVAYENRL 236 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 I + + +G R + A+ + + +DP+ +V RS + +++ + ++ Sbjct: 237 RKQIESIVTSVVGGGRARVQLSADFDYNKVTETSDKFDPEGRVLRSSQTREES-SATSNG 295 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 VTV MP + ++ + K EE +NYEI+ + + +++R+S+AV Sbjct: 296 LNGQVTVNNEMPG-NQQQNAANAGKDQAKKSEEINNYEISRTTKTEVTEAGRVQRMSVAV 354 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 +V+ G + L I +V +A G + RGD + + ++ F + Sbjct: 355 LVDGVYSRNEKGDQVYAPRSQEDLERIATLVRSAIGFDKARGDQVEVVNLRFADAPSAIP 414 Query: 422 GTVQVSFMDIL---SRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 ++ + I V + +++V F+ + L + +D Sbjct: 415 LPDSNGWLSVFQFTKDDVMYFIELGVMSLLSIVVVFMVVRPLVKRVLAEDVPLANAAPAL 474 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 +P P +A+ + +++ V QS R+ + + N Sbjct: 475 PEAPQP--------------VAVAGPVHTAATAQMIDVAQVQGQVHAQSVHRVGELADRN 520 Query: 539 EERFAKILRKWARS 552 I+R+W Sbjct: 521 PNETVAIIRQWLTE 534 >gi|300722640|ref|YP_003711930.1| flagellar basal-body MS-ring and collar protein [Xenorhabdus nematophila ATCC 19061] gi|297629147|emb|CBJ89743.1| flagellar biosynthesis; basal-body MS(membrane and supramembrane)-ring and collar protein [Xenorhabdus nematophila ATCC 19061] Length = 574 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 135/589 (22%), Positives = 246/589 (41%), Gaps = 64/589 (10%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 +Q F + + + L I + +A ++ SP Y LY L D I Sbjct: 9 NQKKGFSAIISRIKADPKVPLLVAGSAAIAIVVALFLWLRSPDYRVLYSNLSDKDGGEIV 68 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L++ N+ +R ++NGS+I +P+ V + R+ LA QGLP + +G+EL DK FG++ Sbjct: 69 TQLTQMNVPYRFAENGSAIMIPTEKVHETRLKLAQQGLPKGGA-TGFELLDKE-KFGISQ 126 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 F +++ RALEGE+ART++S+ + +ARVH+ MP F + P+ASV + + V Sbjct: 127 FSEQVNYQRALEGELARTVESLGPVQSARVHLAMPKPSLFVREQKSPSASVTVGLLQGRV 186 Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQAIQHEI 241 AI H+V+++V L G+VT++D +G+LLT ++ R++ L Q I++ Sbjct: 187 LDEGQINAIVHMVSSSVAGLPAGNVTIVDQSGRLLTQSDATGRDLNTTQLKYTQEIENRF 246 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE--- 298 I LA +G N + V A+++ ++ Y P+ ++ SK + SE Sbjct: 247 RHRIETILAPVVGRGNVHAQVTAQVDFSRREETTEEYKPNQPPNQAAVRSKQSSSSEQSG 306 Query: 299 -----------TSQPESAVTVEQNMPHVSDRKVPLPRSLEN------------------- 328 ++QP +A + P+ + S E Sbjct: 307 GPLVGGVPGALSNQPSAAPSAPIEKPNTNANTNAKDNSDEKPDQQQRNGNNRNNSYERMV 366 Query: 329 ----TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY 384 ++ +E +NYE++ T +ERLS+AVVVN + G + + Sbjct: 367 SNNHNNRYDETTNYEVDRTIRHTQLQAGAVERLSVAVVVNYTMVQGENGPET-KPLMPEQ 425 Query: 385 LAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALV 444 LA+I + A G ++ RGD++ +T+ F + +L + Sbjct: 426 LAQIEALTREAIGFSTDRGDSLNVTNTPFNDTTEVIEALPFWQHPVLLDKLLDAG----- 480 Query: 445 FLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSS 504 L + + + +A+ A ++ Sbjct: 481 -------------RWLLLALAAWLLWRKMIVPQIAKKRAAEKAALDAQKNQQKRSAETNA 527 Query: 505 NQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 D + + R+N+ + Q R+ + E + A ++R+W +E Sbjct: 528 EMDEKMRRQMARQRVNAELQSQ---RIRELAEKDPRVVALVIRQWMSNE 573 >gi|254785458|ref|YP_003072887.1| flagellar MS-ring protein [Teredinibacter turnerae T7901] gi|237683992|gb|ACR11256.1| flagellar M-ring protein FliF [Teredinibacter turnerae T7901] Length = 558 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 125/561 (22%), Positives = 235/561 (41%), Gaps = 33/561 (5%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 + +L R L + + + A + Y LY L+ D + L Sbjct: 15 DLIEGFNNLNLIRQAGLMVGLAASVAIGFAVVLWSQGEDYKPLYGSLDRLDSAEVGQVLD 74 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 +I ++I + ++ VP + KARI LA G+ G+EL D+ G + FM+ Sbjct: 75 FNDIPYKIDGSTGALLVPVDKLQKARILLAENGI-QGDKTIGFELLDQEQPLGTSQFMEA 133 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI--NPSVYK 186 R+LEGE+ARTI SI+ + +ARVH+ +P F + G P+ASV + P K Sbjct: 134 TRYRRSLEGELARTIASINSVRSARVHLAIPKRSVFVRDGREPSASVFLDLYPGRPIKPK 193 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS--LSIVQAIQHEIEMN 244 I +LVAA++P LD +VT++D G L+ + + S L + ++ +I + Sbjct: 194 QIAGIANLVAASIPELDSTNVTIVDQKGNLMEVAPEDEKLAQASQHLDYTRKVEDDIVLR 253 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE------ 298 I + L +G NF++ V A+L+ + ++PD RS + S++ + Sbjct: 254 IRRLLTPIIGDANFKTEVAADLDFTEMEQAAETFNPDLPAIRSEQTSEEQRIGAGGPGGI 313 Query: 299 ----TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 T+QP + + ++ + NYE++ T H +L Sbjct: 314 PGALTNQPPADGAAPE---VAVPGGGGDGQTPPQQSQSRATRNYELDRTVSYTKHQKGRL 370 Query: 355 ERLSIAVVVNKG-RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 RL++AVVV+ + G + ++ L + +V A G ++ RGD++ + + F Sbjct: 371 RRLTVAVVVDDKVQRNAETGEATRVPWTEAELERLAILVRDAVGFSAARGDSVNVLNEPF 430 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 + F+SG + + D + FL+ L+ L L+ L AK Sbjct: 431 VAQLDFDSGDLPIWKEDWFLSLAKQLAG---FLIIVALILGLMRPVLKSLAGA-GAKTKA 486 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQ-DIFSHSRNLQSRINSYVSKQSDLRLL 532 L + + + ++ + L + + S + ++N+ + Sbjct: 487 EEEAKELEALQAAGIDSFDSLSDETVTLTGGDALALPSPEETYEQQLNA---------VK 537 Query: 533 HMIEINEERFAKILRKWARSE 553 ++ + R A+++++W E Sbjct: 538 GLVAEDPGRVAQVIKRWINEE 558 >gi|27381975|ref|NP_773504.1| flagellar MS-ring protein [Bradyrhizobium japonicum USDA 110] gi|27355145|dbj|BAC52129.1| flagellar M-ring protein [Bradyrhizobium japonicum USDA 110] Length = 553 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 189/551 (34%), Positives = 308/551 (55%), Gaps = 17/551 (3%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 Q+ Q + LG R++ L + ++ + ++++ P ++ LY L DV R+ Sbjct: 18 QIQQLLNNLLELGPRRLMALGLIGFAVLVTVVGGAYYLSRPEFETLYTGLSREDVTRMGA 77 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 AL E NI F ++ G ++SV S +AR+ LA +GLP+ S+NSGYELFDK+ S GLTSF Sbjct: 78 ALREQNIAFDVNTAGDAVSVRPSQTMQARMLLAEKGLPT-SANSGYELFDKIGSLGLTSF 136 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 MQE+T++RALEGEIART+Q + G+ AARVHIVMP GSFR P+ASV++R Sbjct: 137 MQEVTKLRALEGEIARTVQLMKGVKAARVHIVMPVRGSFRATQQPPSASVVLRTDGAIEA 196 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-GKSLSIVQAIQHEIEMN 244 ++A++IRHLVAAA+P + VTVLD+ G +L A E E K S+ + + ++ N Sbjct: 197 RTAQSIRHLVAAAIPGMSRDKVTVLDADGSMLLAEEDEATAAPTKMASLQKTVGGMVQEN 256 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 I KAL +LG+DNF +V +L+ D +Q E VYDP+ + ERS+R ++ + S+ + + Sbjct: 257 IRKALTPYLGLDNFEVSVAPQLSTDKRQTNETVYDPEGRAERSVRNVREKESSQNADRST 316 Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 TV+QN+P S E+ ++E+ +N+E+++K+ T D Y +++L IAV+VN Sbjct: 317 PTTVQQNLPDQQVNAGGSKNSSEDKTRREDVTNFEVSSKTTTTVSDGYLVKKLFIAVLVN 376 Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424 + RL LG ++Q +DS LAEI+++ + A G++ +RGD I +T++DF+E + Sbjct: 377 RARLVADLGDKSNQAIVDSKLAEISQLAATAGGLDKQRGDQIQVTAVDFIEGSRELAPVP 436 Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPP 484 +SF++++++ +VINA+ L ++ + GL IL+ Sbjct: 437 PISFVEMINKQLGSVINAVTILAVASMLVWFGLRP---------------AVNGILTHRA 481 Query: 485 ISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAK 544 A + + NL + + + RL ++ +++ + A Sbjct: 482 AQEQTEAAEAAELEAATALALAESQDPELNLVEDLEGKMQRTPQKRLEQIVRLDQAQAAA 541 Query: 545 ILRKWARSEIE 555 IL+ W R E Sbjct: 542 ILKDWMRREEA 552 >gi|212709512|ref|ZP_03317640.1| hypothetical protein PROVALCAL_00554 [Providencia alcalifaciens DSM 30120] gi|212687850|gb|EEB47378.1| hypothetical protein PROVALCAL_00554 [Providencia alcalifaciens DSM 30120] Length = 563 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 136/534 (25%), Positives = 252/534 (47%), Gaps = 40/534 (7%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 + SP Y L L D I L++ N+ ++I+DNGS+I VP+ V + R+ LA Sbjct: 44 LLLWFRSPDYRVLLSNLSAKDGGDIVSQLTQMNVPYQIADNGSAILVPADKVHELRLKLA 103 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 GLP N+G+EL DK FG++ F ++I RALEGE++RTI+S+S + +ARVH+ + Sbjct: 104 QSGLPKGG-NTGFELLDKE-KFGISQFSEQINYQRALEGELSRTIESLSPVQSARVHLAI 161 Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 P F + PTASV + + + AI H+V+++V L +V ++D TG+L Sbjct: 162 PKPTLFVREQKLPTASVTVGLLPGRMLDEGQISAIVHMVSSSVTGLTAANVIIVDQTGRL 221 Query: 217 LTANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LT N+ +++ + + + ++ ++ I L+ +G N + V A+++ + Sbjct: 222 LTNNDNSQQSANSAQIKMTKEMEAHLKERIEDILSPLVGRANIHAQVTAQMDFSKVEQTS 281 Query: 276 IVYDPDSK----VERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD- 330 Y P+ RS + S+ Q S P N P VS P+ + ENTD Sbjct: 282 EEYKPNQTPDAAAVRSRQSSESLQNS-NGGPSGVPGALSNQP-VSAPSAPIDGNKENTDG 339 Query: 331 -------------KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSAD 377 +++E +NYE++ K T ++RLS+AV+VN G Sbjct: 340 KTAGNTRNGTLNTQRDETTNYEVDRKISHTQRQIGVVDRLSVAVIVNYQSQEGEKG-PEM 398 Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437 + L +I+ + A G +++RGD+I IT+ F ++ +S ++S+ Sbjct: 399 KPLPPEMLQQIDALTREAMGYSAQRGDSINITNSLFTDDTPVIEEPSLLSSPQVISQ--- 455 Query: 438 TVINALVFLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPN 496 ++ ++ L+ F+ ++ ++ ++ + ++ +S V + Sbjct: 456 -ALDYGKIVLIALIAWFMWRFGIKPQWVKYRKTQQAQIDAEMSIA---NASQVKAPFVVE 511 Query: 497 DNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 + I+ D D + R + R+++ + Q R+ M E + + A ++R+W Sbjct: 512 EEISED---MDEKTRRRLTRQRVSAEIQSQ---RIREMAEKDPQVVAMVIRQWL 559 >gi|289666081|ref|ZP_06487662.1| flagellar MS-ring protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 574 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 114/568 (20%), Positives = 233/568 (41%), Gaps = 28/568 (4%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ Q+F SL TR L + ++I + + +A F+ P Y +LY L+ + Sbjct: 15 EKAGQWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAA 74 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L A I ++I +ISVP + AR+ LA GL + G+EL +K FG++ Sbjct: 75 DLLRTAQIPYKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQ 134 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 F++ ALE E++RTI ++ + ARVH+ +P +F + +ASV++ Sbjct: 135 FVENARYQHALETELSRTISTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQG 194 Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240 + +AI +LVA+++P++ VTV+D +G++L+ + + V+ + Sbjct: 195 LERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESS 254 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I + L G +++ + +Y+ + RS +++ + + + Sbjct: 255 YNQRIRELLEPMTGPGRVNPETSVDMDFSVVEEARELYNGEPAKLRSEQVNDTS--TTAT 312 Query: 301 QPESAVTVEQN--------------MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346 P+ N + + K NYE++ Sbjct: 313 GPQGPPGATSNSPGQPPAPAAAGAPGTPAAANGQATAAAAPTESSKSATRNYELDRTLQH 372 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 T +++R+S+AV+++ G+ +Q + L I +V A G ++ RGDT+ Sbjct: 373 TRQPAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQAVGFDAARGDTV 432 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 ++ + F+ + + V N L LVG ++V L +R Sbjct: 433 SVMNAPFVREAVAGEEGPKWWEDP-------RVQNGLRLLVGAVVVLALLFGVVRPTLRQ 485 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 + + ++ D+ L +D S ++ ++ I + + Sbjct: 486 LTGVTAVKDKQGKAGKDGTPQSADVRMVDEDDELLPHMGEDTASIGQDRKTPIALPDAYE 545 Query: 527 SDLRL-LHMIEINEERFAKILRKWARSE 553 +R+ ++ + +R A++++ W SE Sbjct: 546 ERMRVAREAVKADSKRVAQVVKGWVASE 573 >gi|115523187|ref|YP_780098.1| flagellar MS-ring protein [Rhodopseudomonas palustris BisA53] gi|115517134|gb|ABJ05118.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris BisA53] Length = 544 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 193/555 (34%), Positives = 314/555 (56%), Gaps = 14/555 (2%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + + + LG R+++LA V L + ++++ P ++ LY L DV Sbjct: 1 MVNREYAQKLWGNLLELGPRRLVLLALVGLAVFIGVGGGAYYISRPEFNVLYSGLSREDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 R+S AL +ANI F ++ G ++ V +AR LA +GLP SS++ GYELFDK+ S Sbjct: 61 TRVSAALRDANIAFDVNATGDTVLVRPGQAAQARTLLADKGLP-SSTSGGYELFDKIGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEIARTIQ I G+ AARVHIVMP GSFR+ P+ASV++R Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQVIKGVKAARVHIVMPARGSFRREQPVPSASVVLRTE 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS-IVQAIQH 239 P+ ++A ++RHLVAAAVP + VTVLDS G LL ++E +L+ + + + Sbjct: 180 GPAEARTARSVRHLVAAAVPGMTPDKVTVLDSDGSLLGSDEDGVGSTPTTLANLQRVVSR 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 I+ N++KAL +LG+DNF +V +L+ D +Q E +YDPDS+V+RS+R ++ + S++ Sbjct: 240 SIQDNVSKALTPYLGLDNFEVSVATQLSTDKRQTNETIYDPDSRVQRSVRAVREKETSQS 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 ++ TV+QN+P S E ++E+ +N+E+++K+I TT D + + ++ + Sbjct: 300 LDRQTPTTVQQNLPDQQVNAGNGNNSNEEKQRREDVTNFEVSSKTITTTSDGFAVTKMFL 359 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AV+VN+ RL LG A + I++ +AEI ++ + A GI+ RGD I +++++F+E Sbjct: 360 AVLVNRPRLVASLGDKASEAAIEAKVAEIAQLAATAAGIDRPRGDQIQVSAVEFIEGGRD 419 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + VSF D+L R +V++A+ L ++ + GL + Sbjct: 420 LAPVPGVSFTDVLMRQAGSVVSAVTILAVAGMLIWFGLRP------------AINTVLAG 467 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 S + A ++ Q + NL ++ RL +++++E Sbjct: 468 TKSNEASQLLMNEGAGLLAGAGGAAAQLGHEATPNLVGDVSMRAQHAPQRRLEQIVQLDE 527 Query: 540 ERFAKILRKWARSEI 554 ++ A IL++W R E Sbjct: 528 KQAAAILKQWIRQEE 542 >gi|222033677|emb|CAP76418.1| flagellar M-ring protein [Escherichia coli LF82] Length = 552 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 133/576 (23%), Positives = 252/576 (43%), Gaps = 50/576 (8%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 A+ + L++ + + +++ S + + +A + +P Y L+ L D Sbjct: 5 AVQTKSLEWLNRLRANPKIPLIVAGS---AAVAVMVALILWAKAPDYRTLFSNLSDQDGG 61 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG Sbjct: 62 AIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFG 119 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 ++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 120 ISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLP 179 Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQ 238 AI HLV++AV L G+VT++D LLT +N R++ L ++ Sbjct: 180 GRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGLHLLTQSNTSGRDLNDAQLKYASDVE 239 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQ 295 I+ I L+ +G N + V A+L+ +++ E Y P+ ++ S+ +++ Sbjct: 240 GRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESE 299 Query: 296 RSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYE 339 +S + P N P ++ S + ++ E SNYE Sbjct: 300 QSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYE 359 Query: 340 INTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN 399 ++ T + ++RLS+AVVVN L + + + +I + A G + Sbjct: 360 VDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFS 415 Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA 459 +RGD++ + + F + + G + ++ A +L+ L+ L A Sbjct: 416 EKRGDSLNVVNSPF-NSSDESGGALPFWQQQAFIDQ---LLAAGRWLLVLLVAWLLWRKA 471 Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519 +R A+ + + + + AV L ++ + +NQ R+ Sbjct: 472 VRPQLTRR-AEAVKTVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RL 519 Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + V Q R+ M + + A ++R+W ++ E Sbjct: 520 GAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|332095496|gb|EGJ00512.1| flagellar M-ring protein FliF [Shigella dysenteriae 155-74] Length = 473 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 119/447 (26%), Positives = 206/447 (46%), Gaps = 33/447 (7%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + LI+A V +M+ A + +P Y L+ L D I L++ Sbjct: 13 WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 71 NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247 AI HLV++AV L G+VT++D G LLT +N R++ L ++ I+ I Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQRSETSQPES 304 L+ +G N + V A+L+ +++ E Y P+ ++ S+ ++++S + P Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGG 308 Query: 305 AVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIATT 348 N P ++ S + ++ E SNYE++ T Sbjct: 309 VPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTK 368 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 + ++RLS+AVVVN L + + + +I + A G + +RGD++ + Sbjct: 369 MNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLNV 424 Query: 409 TSMDFL---ENQLFNSGTVQVSFMDIL 432 + F E+ Q +F+D L Sbjct: 425 VNSPFNSSDESGGELPFWQQQAFIDQL 451 >gi|118593642|ref|ZP_01551018.1| flagellar M-ring protein [Stappia aggregata IAM 12614] gi|118433753|gb|EAV40414.1| flagellar M-ring protein [Stappia aggregata IAM 12614] Length = 537 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 148/556 (26%), Positives = 262/556 (47%), Gaps = 23/556 (4%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++ L++F K +LG RI + +V + + +F F V +P LY +L + D I Sbjct: 1 MNGLVEFIK---TLGAARIAAMGAVAAILVGVFAFIIFRVTAPQMTTLYNELTLEDSAAI 57 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L + F I+ G+SI VP+ V + R+ LAA+GLP+ S GYE+FD+ ++ G T Sbjct: 58 VSQLESQGVQFEIARQGASILVPNEQVARLRMQLAAEGLPTGGS-IGYEIFDRSDTLGAT 116 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 SF+Q I +RA+EGE++RTI S+ I AARVH+V+P+ F+K P+AS+++ Sbjct: 117 SFVQNINHLRAMEGELSRTIGSLDRIRAARVHLVIPERQLFQKDRRPPSASIVLNVRGAL 176 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA---NEMERNILGKSLSIVQAIQHE 240 A++HLVA AV L+ V+++D +G+LL + N+ + + ++ Sbjct: 177 GPGEIRAVQHLVATAVDGLEPDRVSIVDESGRLLASGVGNDEDGLLTNSLQERTVEVEGR 236 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 + I + L + +G R V AE++ + +DPD +V RS + ++A + + Sbjct: 237 LRNQIEEILNSVVGPGRARVRVNAEVDYNRLTETTETFDPDGQVVRSTQSKEEASSAVSR 296 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 VTV +P+ + R + + EE NYEI+ + + K++RLS+A Sbjct: 297 N--GQVTVANQLPNADAGQGGAER--DTSSVTEEIVNYEISHSTRTEVVEAGKIKRLSVA 352 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 V+V+ + G S + L I +V +A G +S RGD + + ++ F + Sbjct: 353 VLVDGTYQPDGNGGSTYTPRSQETLDRIAVLVRSAVGFDSERGDVVEVVNLQFALPPQDD 412 Query: 421 SGTVQVSFMDILSRHFATVIN-ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 S D ++FL+ +L+ F+ LRR+ ++ + E Sbjct: 413 LLAESDSLFDFTRNDIIRFAELGVLFLIAVMLLLFVVRPLLRRIVTPEEKQPQE------ 466 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 L P + V +P + + +D F Q++ + S ++ MI+ + Sbjct: 467 LMIGPDGTLVIETEVPQEE-----AVEDEFVIEWLEQAKQEGAMQASSIAKVGDMIKDHP 521 Query: 540 ERFAKILRKWARSEIE 555 I+R W + Sbjct: 522 TEAVTIVRGWLDEQAA 537 >gi|39648187|emb|CAE26707.1| putative flagellar M-ring protein [Rhodopseudomonas palustris CGA009] Length = 522 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 135/535 (25%), Positives = 233/535 (43%), Gaps = 21/535 (3%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 + + +V + + F V+ P LY L V D + I L I F + ++G+ Sbjct: 1 MAMIAVTVALVGFFAFVIMRVSQPQMTTLYTDLSVEDSSSIIKELERQGIPFEMRNDGAI 60 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 + VP V + R+ LA GYE+FDK ++ G TSF+Q I +RALEGE++RT Sbjct: 61 LLVPKDKVTRLRMKLAEG-GLPKGGGVGYEIFDKSDALGTTSFVQNINHLRALEGELSRT 119 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNL 202 I++I + AARVH+V+P+ F + P+AS+++R + AIRHLVA+AV L Sbjct: 120 IRAIDRVQAARVHLVLPERPLFSREAPEPSASIVLRVRGALEPQQVRAIRHLVASAVNGL 179 Query: 203 DMGDVTVLDSTGKLLTANEMERNILGKSLSIVQA--IQHEIEMNINKALAAFLGVDNFRS 260 V+++D G+LL + + S + + + I +++ +G R Sbjct: 180 KPQRVSIVDEAGQLLADGSASGEQVEGATSDERRAAFEKRMRNQIEGIVSSVVGSGRARV 239 Query: 261 AVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV 320 V A+ + + +DP+ +V RS + +++ + TS + VTV +P + + Sbjct: 240 QVSADFDYNKITQTSDKFDPEGRVLRSSQTREES--AATSAADGQVTVNNELPGANQGQG 297 Query: 321 PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380 R + K EE +NYEI+ + + ++ RLS+AV+V+ G + Sbjct: 298 AGARDVSK--KSEETNNYEISRVTKTEVTEAGRVNRLSVAVLVDGAYTKNDKGELVYAER 355 Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDIL---SRHFA 437 L I +V +A G + +RGD I + ++ F E M + Sbjct: 356 PKEQLDRIAALVRSAIGFDQKRGDQIEVVNLKFAEAPQVEKLPEPAGLMGMFQFTKDDIM 415 Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497 +I V + L+V F+ + L + + + A+ G +P Sbjct: 416 NMIQLGVMFLLGLVVLFMVIRPLVKRI---------LAAEPAPEAAGGLPALADGTVPQ- 465 Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 I D S +++ V QS R+ + E N A I+R+W Sbjct: 466 -IGADGQPVPASVPSMIDIAQVQGQVHAQSVHRVGELAERNPNETAAIIRQWLAE 519 >gi|291278937|ref|YP_003495772.1| flagellar M-ring protein FliF [Deferribacter desulfuricans SSM1] gi|290753639|dbj|BAI80016.1| flagellar M-ring protein FliF [Deferribacter desulfuricans SSM1] Length = 556 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 131/560 (23%), Positives = 243/560 (43%), Gaps = 16/560 (2%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 MA+ D + QF SL + + + + + + + + N P Y LY L D Sbjct: 1 MALKDFINQFKAVFNSLSLIQKVSIVTATVAVFLTIIVLVIWANKPVYKTLYSNLSSDDA 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +I L I + + DNG +I VP V + R++LA +GLP S +G+ELFDK +SF Sbjct: 61 AKIVEELKANKIPYELKDNGKTILVPEKNVYELRLNLAQKGLP-SGGGAGFELFDK-SSF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 G++ F Q + RAL+GE+ARTI+S+ + ARVH+ +P F + P A+V+++ Sbjct: 119 GISEFAQNVNYQRALQGELARTIKSLDEVEDARVHLTLPKERIFVSEESSPKATVVLKFR 178 Query: 181 NPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN----ILGKSLSIV 234 N + ++ +AI LVA AV L + +V V+D+ G+LL+ + + L Sbjct: 179 NGANISRENIKAIASLVAGAVKGLTIDNVQVVDTKGRLLSEFLSKDYEPLLLTQTQLEYQ 238 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 + I+ +E IN L+ LG DN + V A+++ + + + YDP+ V RS + + Sbjct: 239 KHIEKNLESKINSILSRVLGPDNAVAKVTADIDFTKKVVSKEEYDPN-PVLRSQQTVEIE 297 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 ++ + P V N+ ++ S K E N+E+ + Sbjct: 298 SKNTPNAPGGTPGVSSNLAEPNNIN---NGSNSEYSKAETTQNFEVGKTVTKEEKPIGVV 354 Query: 355 ERLSIAVVVNK---GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 +++++AV++N + + + +I K+V +A GI+ RGD I +T++ Sbjct: 355 KKITVAVLLNDKKVVKEEGKKSKIEYVKWTPEEIEKIKKLVESAAGIDVNRGDRIEVTNI 414 Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 F + + +S F L L+ L + L+RL + + ++ Sbjct: 415 SFDTTHDLEVASFYNK-QEKMSLIFTIAKYVLALLIVVLFYFLVVRPILKRLETVRETEE 473 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 G + + + + +++ +K +L Sbjct: 474 GTFVAAGATGKGESVDISIGEEIKFPKTIEELEKEIENELEESAPVDVDTVKTKVMLKKL 533 Query: 532 LHMIEINEERFAKILRKWAR 551 + E A +++ W + Sbjct: 534 EEAANEDPETIANLIKVWIK 553 >gi|288942636|ref|YP_003444876.1| flagellar M-ring protein FliF [Allochromatium vinosum DSM 180] gi|288898008|gb|ADC63844.1| flagellar M-ring protein FliF [Allochromatium vinosum DSM 180] Length = 577 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 114/554 (20%), Positives = 222/554 (40%), Gaps = 19/554 (3%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 +S + R + L + ++ +A F+ P Y L+ +LE ++ + AL++ Sbjct: 33 LQSFREMPVGRQIALLGTLAGGLVAVVAILFWALKPTYVPLFSQLEGAEAAEVMEALTQL 92 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 + +R+ ++ I +P V + R+ LA QGLP S++ G+EL + + FG + ++ Sbjct: 93 GVPYRVDNSSGRIEIPQQRVAETRLQLAGQGLPK-SADIGFELLQQESGFGTSRLIEGAR 151 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYKSA 188 RALEGE+ R+I ++ + ARVHI + F + P+ASV++ Sbjct: 152 FQRALEGELGRSIAALEPVDKARVHIARAERSVFVRERVPPSASVVVHLKGSRGLTDTQV 211 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEMNIN 246 AI HLV+++VP L VTV+D +G+LLT++ +++ + L ++ + Sbjct: 212 GAIVHLVSSSVPELTPDRVTVVDQSGRLLTSDGEDKSSRLSLDHLEYTHRVESRYVDRVQ 271 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306 L +G D R V A+L+ + + YDPD RS +L+++ + Sbjct: 272 SLLVPIVGRDRVRVQVSADLDFSRVERTQESYDPDKTAIRSEQLNEEERIGADPLAGGIP 331 Query: 307 TVEQNMPHVSD-----RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 N P + ++ ++ ++ NYE++ + RL+ AV Sbjct: 332 GALTNQPPAGGVVGQQQAAQGNATVPSSRSQQTTRNYEVDRTISHIQETPGGVRRLTAAV 391 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 VV+ G + D+ + + +V A G N RGD++ + S F+ + Sbjct: 392 VVDYVDQVNEAGEPIRVPRSDAEMETLRDLVREAIGFNEARGDSLQVRSASFVPESDEDE 451 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 + + + + G LL + L ++ N K E Sbjct: 452 EPIWTQPW---------FLELVKIVGGLLLALIVMLTVVKPALNQILPKPPEPEKPQEDE 502 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 + G + S S L + + M+ + +R Sbjct: 503 ETRALTDGIEGEGEGEEGEEIVSLTHEPSGLAALMGPKGPDRQQLDLEAVREMVREDPKR 562 Query: 542 FAKILRKWARSEIE 555 +++++W + Sbjct: 563 VVQVMKQWLAEDGS 576 >gi|58582224|ref|YP_201240.1| flagellar MS-ring protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624117|ref|YP_451489.1| flagellar MS-ring protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188576784|ref|YP_001913713.1| flagellar MS-ring protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188576976|ref|YP_001913905.1| flagellar MS-ring protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|58426818|gb|AAW75855.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368057|dbj|BAE69215.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188521236|gb|ACD59181.1| flagellar M-ring protein FliF [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521428|gb|ACD59373.1| flagellar M-ring protein FliF [Xanthomonas oryzae pv. oryzae PXO99A] Length = 574 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 116/568 (20%), Positives = 242/568 (42%), Gaps = 28/568 (4%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ Q+F +SL TR L + ++I + + +A F+ P Y +LY L+ + Sbjct: 15 EKAGQWFDRVSSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAA 74 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L A I ++I +ISVP + AR+ LA GL + G+EL +K FG++ Sbjct: 75 DLLRTAQIPYKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQ 134 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 F++ ALE E++RTI ++ + ARVH+ +P +F + +ASV++ Sbjct: 135 FVENARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQG 194 Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240 + +AI +LVA+++PN+ VTV+D +G++L+ + + V+ + Sbjct: 195 LERNQVDAIVNLVASSIPNITPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESS 254 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I + L G +++ + +Y+ + RS +++ + + + Sbjct: 255 YNQRIRELLEPMTGPGRVNPETSVDMDFSVVEEARELYNGEPAKLRSEQVNDTS--TTAT 312 Query: 301 QPESAVTVEQN--------------MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346 P+ N + + K NYE++ Sbjct: 313 GPQGPPGATSNSPGQPPAPAAAGAPGTPAAANGQATAAAAPTESSKSATRNYELDRTLQH 372 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 T +++R+S+AV+++ G+ +Q + L I +V A G ++ RGDT+ Sbjct: 373 TRQPAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQAVGFDAARGDTV 432 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 ++ + F+ + + + ++ ALV L L+ + LR+L + Sbjct: 433 SVMNAPFVREAVAGEEGPKWWEDPRVQNGLRLLVGALVVLA---LLFGVVRPTLRQLTGV 489 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 K+ + G + +P + ++ +++ L +D S + + I + + Sbjct: 490 TPIKEKQRKGGNDGTP----QSADVRMVDDEDSLLPHMGEDTASIGQERKPAIALPDAYE 545 Query: 527 SDLRL-LHMIEINEERFAKILRKWARSE 553 +R+ ++ + +R A++++ W SE Sbjct: 546 ERMRVAREAVKADSKRVAQVVKGWVASE 573 >gi|317492408|ref|ZP_07950837.1| flagellar M-ring protein FliF [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919747|gb|EFV41077.1| flagellar M-ring protein FliF [Enterobacteriaceae bacterium 9_2_54FAA] Length = 573 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 134/549 (24%), Positives = 235/549 (42%), Gaps = 65/549 (11%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + SP Y LY + D I L++ NI +R +DNG+++ +P+ V + R+ LA QG Sbjct: 52 WAKSPDYRVLYSNISDRDGGAIVTQLTQMNIPYRFADNGTALLIPADKVHETRLRLAQQG 111 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP + G+EL D+ FG++ F ++I RALEGE++RTI+++ + ARVH+ +P Sbjct: 112 LPKGGA-VGFELLDQE-KFGISQFSEQINYQRALEGELSRTIETLGPVQTARVHLALPKP 169 Query: 162 GSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + +P+ASV + AI ++V+++V L G+VTV+D G LLT Sbjct: 170 SLFVREQKQPSASVTLNLQPGRALDEGQINAIVYMVSSSVAGLPAGNVTVVDQGGHLLTQ 229 Query: 220 NEM-ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 ++ R++ L ++ I+ I L +G N + V A+++ ++ + Y Sbjct: 230 SDGTGRDLNATQLKYANEVESRIQRRIEAILQPMVGNGNVHAQVTAQIDNAVREQTDEEY 289 Query: 279 DPDSKVERSI--------------RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLP- 323 P+ ++ +LS + T+QP A T P + Sbjct: 290 KPNQAPNQAAVRSQQLSDSSQSGGQLSGGVPGALTNQPAPAATGNITNPPQAGGANANTA 349 Query: 324 ----------------RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367 S + +++E NYE++ T ++RLS+AVVVN Sbjct: 350 NAQRPASSTIDTNGRRSSSASNARRDETINYEVDRTIRHTQQKAGNVDRLSVAVVVNY-- 407 Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF---LENQLFNSGTV 424 T G+S L ++ +V A G ++ RGDT+ + + F E Sbjct: 408 TTNASGKSI--PLTPQQLEQVTALVREAMGFSATRGDTLNVVNTPFTTSAEESGDVPFWQ 465 Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPP 484 Q SF D+L + +L+ ++ L ++ L N ++ Sbjct: 466 QSSFFDLL-------MTLGRYLLVLIVAFILWRKLVKPLLNK------QLANAQPARRVE 512 Query: 485 ISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAK 544 + VTT + P + + + R Q R + Q R+ M E + A Sbjct: 513 PTPIVTTPVQPA------KPSNEEIQNRRKSQQRATAEQQAQ---RVRDMAEQDPRVVAL 563 Query: 545 ILRKWARSE 553 ++R+W +E Sbjct: 564 VIRQWMSNE 572 >gi|167717602|ref|ZP_02400838.1| flagellar MS-ring protein [Burkholderia pseudomallei DM98] Length = 476 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 121/434 (27%), Positives = 199/434 (45%), Gaps = 15/434 (3%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 44 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 103 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++SI+ + AARVH+ +P Sbjct: 104 LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 161 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ V + A+ +V+++VP++ +VT++D G LLT Sbjct: 162 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 221 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 222 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 281 Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH--------VSDRKVPLPRSLEN 328 P+ ++S S+ S S N P S+ + P + Sbjct: 282 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 341 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 +D+K+ +NYE++ ++RLS+AVVVN T+ GR Q LA++ Sbjct: 342 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQV 401 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G + +RGD++ + + F + D++ V Sbjct: 402 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 461 Query: 449 TLLVTFLGLHALRR 462 L ALRR Sbjct: 462 AALYFMFVRPALRR 475 >gi|161511085|ref|NP_773639.2| flagellar MS-ring protein [Bradyrhizobium japonicum USDA 110] Length = 537 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 137/553 (24%), Positives = 238/553 (43%), Gaps = 23/553 (4%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + L F K +G R + +V + F V +P L+ L V D + I Sbjct: 1 MQGLADFLKG---IGAARFGAMIAVTAALVGFFAFVIMRVTTPQMTTLFTDLSVEDSSSI 57 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L I F + + G+ I VP V + R+ LA GYE+FDK ++ G T Sbjct: 58 IKDLERQAIQFELRNEGTIIMVPKDKVTRLRMKLAEG-GLPKGGGVGYEVFDKSDALGTT 116 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 SF+Q I +RALEGE+ARTI++I I AARVH+V+P+ F + P+AS+++R Sbjct: 117 SFVQNINHLRALEGELARTIRAIDRIQAARVHLVLPERPLFSREAPEPSASIVVRVRGAL 176 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEM 243 + AIRHLVA+AV L V+++D G+LL + + Sbjct: 177 EAQQIRAIRHLVASAVNGLKPQRVSIVDEAGQLLADGAATDPEQALGDERRTTFEKRMRK 236 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 + +++ +G R + A+ + + +DP+ +V RS + +++ S T+ Sbjct: 237 QVEDIVSSVVGSGRARVQLSADFDFNKITQTSDKFDPEGRVLRSTQTREES--SMTADNN 294 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 VTV +P +++ + + + K EE +NYEI+ + + ++ R+S+AV+V Sbjct: 295 GQVTVNNELPG--NQQNNGVAAKDQSKKTEETNNYEISRTTKTEVTEAGRVNRISVAVLV 352 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 + G A Q + L I +V +A G + +RGD + + ++ F + Sbjct: 353 DGIYSKNDKGELAYQDRTKEQLDRIATLVRSAIGFDQKRGDQVEVVNLRFADAPSTAPIA 412 Query: 424 VQVSFMDIL---SRHFATVINALVFLVGTLLVTFLGLHAL-RRLHNIDDAKKGEVGGKSI 479 F+ +L + V ++ L+V F+ + L +R+ D+ G S Sbjct: 413 EPSGFLGMLQFTKDDVMYFVELGVMMLLGLVVLFMVIRPLVKRILASDEVAAAISGVLSG 472 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 + ++ + A S + I V QS R+ + E N Sbjct: 473 PAASDEAAPAAGQALLPGGAA-----------SAIDVATIQGQVHAQSVHRVGELAERNP 521 Query: 540 ERFAKILRKWARS 552 I+R+W Sbjct: 522 NETVAIIRQWLTE 534 >gi|78485783|ref|YP_391708.1| flagellar M-ring protein FliF [Thiomicrospira crunogena XCL-2] gi|78364069|gb|ABB42034.1| Flagellar M-ring protein FliF [Thiomicrospira crunogena XCL-2] Length = 561 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 123/553 (22%), Positives = 237/553 (42%), Gaps = 25/553 (4%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 K+ TSL + + L + + L + + S Y L+ ++ D+N + L + Sbjct: 22 LLKNLTSLSVAKQVSLVIALAASVALAIGIILWSQSASYTLLFGSMDAKDMNEVIQTLDQ 81 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 N+ ++I N +I VP+ V R+ LAAQG P + +GY++ D FG++ F + Sbjct: 82 ENVPYKIEQNSGAILVPNEQVHSLRLKLAAQGYPKQAP-TGYQILDIDQGFGISQFKETT 140 Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KS 187 RALEGE+A+++ SI+ + +ARV + MP F + PTASV ++ + Sbjct: 141 RYQRALEGELAKSVSSINAVKSARVMLGMPKRSVFVRKQQEPTASVTVKLYPGRALNEEQ 200 Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQAIQHEIEMNI 245 AI +LV++++PN+ VTV+D G LLT++ N+ K L + ++ + I Sbjct: 201 VSAIVYLVSSSIPNMKPKGVTVVDQQGNLLTSDSHSGIMNVSLKQLGYTRQVEDTLSQRI 260 Query: 246 NKALAAFLGVD-NFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 + L G D R+ V AEL+ Q+ Y+PD + RS + K+ R+E P Sbjct: 261 IRLLTPVAGGDHKVRAQVTAELDFTQQEQTRENYEPDPEAIRSEQEIKEINRNEG--PMG 318 Query: 305 AVTVEQNMPHVSDRKV-----PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 N P + P K+++ NYE++ + + RLS+ Sbjct: 319 IPGALTNQPPRAGIAPEEGYKPENDPNLKNSKEKKTKNYELDRTVSHIKNSVGSIRRLSV 378 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AVV++ + G + + L ++VS A G++ RGDT++I + F++ + Sbjct: 379 AVVLDDKLTVDDNGDTVRTPLTEDELQRYRRLVSDAVGLDEARGDTLSIVNASFIQEKQE 438 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + ++ ++ L L+ V L+ L ++ Sbjct: 439 DFAGPEIWEEPWFWTLVKQILAGLAVLIIIFGVI---RPMLKDLSKREEVAMDYPEDVPE 495 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 ++ + + N ++ +++ S + + ++ ++ + Sbjct: 496 EEEELENADEISRALEQMNEEVEQKAEEVDEDSEKDKEMLE---------KVKAVVSADP 546 Query: 540 ERFAKILRKWARS 552 + A I+++W Sbjct: 547 KLAAHIIKQWMSK 559 >gi|119899006|ref|YP_934219.1| flagellar MS-ring protein [Azoarcus sp. BH72] gi|119671419|emb|CAL95332.1| flagellar M-ring protein [Azoarcus sp. BH72] Length = 562 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 144/571 (25%), Positives = 249/571 (43%), Gaps = 44/571 (7%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 +L Q ++ +L + + A+ + + + L + A + P Y L+ L+ D ++ Sbjct: 19 RLQQVVQNINALSMRQKIAGAAALALAVALIVGALMWNRQPDYGVLFSNLDERDGGQVIA 78 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 AL + N+ +R+S NG SI VP V + R+ LAA GLP G+EL D G++ F Sbjct: 79 ALQQQNVPYRMSPNGLSILVPQEQVHELRLRLAAAGLPRGGL-VGFELMD-TQKLGVSQF 136 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 +++ RALEGE++RTIQSI+ + AARVH+ MP +F + +PTASVM+ V Sbjct: 137 NEQVNYQRALEGELSRTIQSIAAVAAARVHLAMPKQTAFLRDDQKPTASVMVTLRPGRVL 196 Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKSLSIVQAIQHE 240 I HLV+++VP + V ++D G+LLT + + L V+ ++ Sbjct: 197 DANQVAGIVHLVSSSVPRMVESGVNIIDQNGELLTTKNDPLRQTGLDATQLEYVKEVEAG 256 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS---KVERSIRLSKDAQRS 297 I L +G +NFR+ V A+++ + + + P+ + RS + +++ R Sbjct: 257 FIRRIENILQPMVGKNNFRAQVAADVDFNQVEQTAETFKPNPSPDQAIRSQQTTEETNRQ 316 Query: 298 E---------TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 ++QP T P V + ++ T + NYE++ Sbjct: 317 PGPQGVPGALSNQPPVPATAPITTPPVGPNQAGAAQT--GTTSRSAVLNYEVDRTIQHVK 374 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 +L+RLS+AVVVN T G++ D +A IN +V A G N RGDTI + Sbjct: 375 QSLGQLKRLSVAVVVNHRTETLPNGQTQTVPLTDEEVARINNLVREAVGYNPARGDTINV 434 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 S F + V + + L+ + L F + L R Sbjct: 435 ASSPFA--GIGPEPAVPLWKDPEMIELGKEGFKYLLVALAVLFAYFAIIRPLMR------ 486 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 +++ PPP G + + S + ++ N+Y +K + Sbjct: 487 ---------TVMPPPPEPEVAEAGEPGEPGFEGEEDVEVTLSGA----AQANTYEAKLA- 532 Query: 529 LRLLHMIEINEERFAKILRKWARSEIEDRYT 559 R + + + + A ++R+W E R + Sbjct: 533 -RARELAKEDPKMVANLIREWMGLNEEGRKS 562 >gi|329298594|ref|ZP_08255930.1| flagellar MS-ring protein [Plautia stali symbiont] Length = 573 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 128/549 (23%), Positives = 229/549 (41%), Gaps = 59/549 (10%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I L++ NI ++ ++NG ++ VP+ + + LA QG Sbjct: 48 WAKAPDYRVLYNNLSDEDGGAIVTQLTQMNIPYQFAENGGALMVPADKEHELSLRLAQQG 107 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL DK FG++ F ++I RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 108 LPKGGS-VGFELMDKE-KFGISQFSEQINYQRALEGELARTIETLGPVKSARVHLAMPKP 165 Query: 162 GSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV + +AI+H+V+++V L +G+VTV+D G+LLT Sbjct: 166 TLFVREQKSPSASVTLNLQPGRALDKGQIQAIQHMVSSSVAGLPLGNVTVVDQAGRLLTR 225 Query: 220 NEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 ++ E R++ L ++ + I L L N + V A++N D + + Y Sbjct: 226 SDSEGRDLNDAQLKYASEVEARYQQRIEAILNPILDQGNVHAQVTAQINFDRSEQTDEKY 285 Query: 279 ----DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV-------------- 320 +P++ RS + S + Q + P N P ++ Sbjct: 286 QPNANPNNTAIRSHQTSTNVQNG-SPYPGGVPGALSNQPAPANTAPVTNPQQQNNNTANG 344 Query: 321 ---------------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365 S ++ + + NYE++ T + ++RLS+AVVVN Sbjct: 345 QQNNNNAQNAGTSTSTAQSSGPSSSSRNDTVNYELDRTIRHTKLNVGDVQRLSVAVVVNY 404 Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425 + + D + +I + A G + RGD++ + + F + Sbjct: 405 RDDRKGKAVVLN----DQQIKQIEDLTREAMGYSQTRGDSVNVVNSQFNTTEPTGGD--- 457 Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485 + F S F ++ A +L+ L+ L +R + + Sbjct: 458 LPFWQQQS-FFEQLMTAGRWLLVALVAFILYRKMVRPQLLRKREAEKAAAEAAAARAAAR 516 Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545 + N +D R +R+++ V Q R+ M E + A + Sbjct: 517 EEEAAYSVQIN---------KDELDKERKSNNRMSAEVMSQ---RIRDMSENDPRVVALV 564 Query: 546 LRKWARSEI 554 +R+W +E+ Sbjct: 565 IREWMSNEL 573 >gi|288962688|ref|YP_003452982.1| flagellar M-ring protein [Azospirillum sp. B510] gi|288914954|dbj|BAI76438.1| flagellar M-ring protein [Azospirillum sp. B510] Length = 579 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 173/580 (29%), Positives = 276/580 (47%), Gaps = 28/580 (4%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + + + SLGR R+L+LA L ++ ++ PH LY LE ++ R Sbjct: 1 MRGTVDSLIDTLRSLGRGRLLVLAGTGLGIVLAVAGMALLLSQPHMTALYSGLEPAEAGR 60 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I+ A+ E + +G++ISVP + V + R+ LA +GLPS GYELFD G+ Sbjct: 61 IAKAVQEMGVPVNAGFDGTTISVPQADVSRVRMALAEKGLPSRGG-VGYELFDTDKPLGI 119 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN- 181 TSFMQ I R+RA+EGE+ RTI+++SG+ AARVHIV+P+ F + +PTASV++R Sbjct: 120 TSFMQRINRLRAMEGELGRTIETLSGVEAARVHIVLPEREEFSRSAPKPTASVVVRMRGR 179 Query: 182 -PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS-IVQAIQH 239 K A +IRHLV+AAVPNL VTV+DS+G+LL + + + A + Sbjct: 180 AAMDRKQALSIRHLVSAAVPNLKPSAVTVMDSSGELLLTEDDGPGLASARTDGLRVAAET 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 + + + L A LG N R V AE+ + +R +DP+S+V RS + ++ +RS+ Sbjct: 240 RVARAVEQMLTARLGAGNVRVQVAAEVETKREVVRSQSFDPNSQVVRSTQTVQEQERSQD 299 Query: 300 SQPESAVTVEQNMPHVS-DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 S E VT EQN+P + P+S +T ++EE NYEI+ S T + + RLS Sbjct: 300 SNGEPPVTAEQNLPQRDVRAQSQGPQSSNDTKRQEETVNYEISNVSRETVIEPGDVRRLS 359 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE-NQ 417 +AV+VN T G + + L + ++V +A G + RGD +T+ +++F++ Sbjct: 360 VAVLVNGTWKTAPDGTRQYEPRSTEELRRLGELVRSAMGFSEARGDRVTVDNLEFVDLAP 419 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR--------------- 462 + + L+R+ T+I ++ LV + LV +GL L R Sbjct: 420 DLTPRPLGDEIAETLTRNIMTLIQWVILLVLSALVILVGLRPLIRRVFPAPGPVAAEASA 479 Query: 463 --LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS--- 517 L ++ G +I A + + Sbjct: 480 PALAAPAGGPMPQLTGPAIAGAGAAGLAPADAGEAEAAAFGAAPMAPQLGIEETMDQLIE 539 Query: 518 --RINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + V S RL +++ + ILR W E+ Sbjct: 540 LRTVEGRVRASSIRRLGELVDQYPDEAIDILRSWLYEEVA 579 >gi|261855054|ref|YP_003262337.1| flagellar M-ring protein FliF [Halothiobacillus neapolitanus c2] gi|261835523|gb|ACX95290.1| flagellar M-ring protein FliF [Halothiobacillus neapolitanus c2] Length = 590 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 118/569 (20%), Positives = 234/569 (41%), Gaps = 35/569 (6%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 T R L++ + + + + P LY L + + AL A Sbjct: 28 GFTQSSSFRQLLILVALAATLSFMVGFFLWGQKPSLVPLYTNLGPKESAAVVEALRAAKK 87 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 ++++S +G +I V + + R+ LA +GLP S + G E+ DK S G + F+++ Sbjct: 88 NYQLSADG-AILVDPAQLPAVRMLLAGEGLP-SGNGVGLEMLDKDQSLGTSQFVEQARYQ 145 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEA 190 A+E E+AR+I++I G+ AARVH+ P F + +PTASV++ A Sbjct: 146 HAIEIELARSIETIQGVSAARVHLATPKQSVFVREQQKPTASVVVELSPGQSLTADQVRA 205 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER---NILGKSLSIVQAIQHEIEMNINK 247 I HLVA++V + +V+V+D G+LL+ N + + K + Q ++ I Sbjct: 206 IVHLVASSVAGMKPENVSVIDQRGELLSQNSDDASGMGLTDKQFAYRQRVERAYARQIEA 265 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR-SETSQPESAV 306 L +G + R+ V A+++ Q+ Y P + V S + + + + Sbjct: 266 LLTPIVGANQVRAQVSADIDFSRQEGTSETYGPKTGVVLSEQTNDTTRALGDQGINGGVP 325 Query: 307 TVEQNMPHVSDRKVPLPRS------------------LENTDKKEEQSNYEINTKSIATT 348 N P P + +K E NY ++ T Sbjct: 326 GALSNQPPGGGTVTPQTSGGLQPPANLDVQQYQQIIQTPISTQKNETRNYNVDKDIRHTQ 385 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 + + +++L++AV++++ +T+ G++ + D+ LA I +VS A G++ +RGD +T+ Sbjct: 386 YASGAVDKLNVAVLLDEKTVTDKDGKTKTEPMSDAELARIKDLVSQAVGLDEQRGDKLTL 445 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 S+ F+E ++ F ++ L V LL+ + + L ++ Sbjct: 446 ASIPFVEQKIEKVSVPL-----WQQEWFMPLLKNLGLGVAMLLIFLMVVRPLLKMLADKS 500 Query: 469 AKKG--EVGGKSILSPPPISSAVTTGLMPNDNIALDS--SNQDIFSHSRNLQSRINSYVS 524 + G ++ + + G+ + D + + + + Sbjct: 501 RPEALPHQPGAALPNGTEDNGMNEEGVSFTRQASEGGQIPGPDDEDNLEGVPQLVGAASY 560 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSE 553 +L I + + A ++++W SE Sbjct: 561 ADKLRQLKQSINHDPKAVAAVIKQWTHSE 589 >gi|17548611|ref|NP_521951.1| flagellar M-ring transmembrane protein [Ralstonia solanacearum GMI1000] gi|17430859|emb|CAD17541.1| probable flagellar m-ring transmembrane protein [Ralstonia solanacearum GMI1000] Length = 611 Score = 412 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 130/556 (23%), Positives = 234/556 (42%), Gaps = 49/556 (8%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 + +P Y LY + SD I AL + N+ +R +D GS+I VP + V +AR+ LA Sbjct: 64 GMLWSRAPSYRVLYSNVADSDGGAIIAALQQMNVPYRFADGGSAIMVPEANVHEARLKLA 123 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 AQGLP +G+EL + FG + F++++ RALEGE+ARTIQ++ + +ARVH+ + Sbjct: 124 AQGLPKGGL-AGFELME-NQKFGTSQFVEQVNYQRALEGELARTIQAMQEVQSARVHLAL 181 Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 F + +P+ASV+++ + +AI HL+A++VP+L + +VTV+D +G+L Sbjct: 182 SKPSVFVREQVKPSASVLLKLYPGRMLDRSQVQAIGHLLASSVPDLPLANVTVVDQSGRL 241 Query: 217 LTAN--EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 L+A+ + + L+ V+ I+ I L +G DN R+ V A +++D + Sbjct: 242 LSASFQDNASGLDPTQLNYVRDIEQGYIKRIEAILGPVVGEDNVRAQVTANVDLDNTEQM 301 Query: 275 EIVY----DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVP--------- 321 Y DP + RS S+ Q +Q N P + R +P Sbjct: 302 AETYRPNQDPANGAVRSTHTSESTQNKAGAQ-GGVPGALSNQPPTAPRMLPTAPAPAAQQ 360 Query: 322 ------------------------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 + + ++ NYE++ T + RL Sbjct: 361 AAAGQNGQNGQNGQQQGAAAGTGQAAANTAESSARDTTINYEVDKTVRRTRAAVGTVRRL 420 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 S+AVVVN + + D+ + ++N +V A G +++RGD++ + + F Sbjct: 421 SVAVVVNYRADGK-----TWKPLSDAEMTKLNALVKDAVGYDAKRGDSVNVVNSQFSGTL 475 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 + + + + + +G L++ F + L R N D Sbjct: 476 PTSKDDLPLWKQPEMIHYAIQAAKYGALAIGFLILVFAVIRPLIRSMNKKDEPVTATFVG 535 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 P + S D L ++ +Q + + + Sbjct: 536 REGEDPNAPIITGAAAPAGPELEGPSVVTDGDEVPDELPQLKQNHDFEQKLETMRRVAQQ 595 Query: 538 NEERFAKILRKWARSE 553 N A ++++W +E Sbjct: 596 NPRAVAAVIKQWVSNE 611 >gi|114705807|ref|ZP_01438710.1| flagellar M-ring protein [Fulvimarina pelagi HTCC2506] gi|114538653|gb|EAU41774.1| flagellar M-ring protein [Fulvimarina pelagi HTCC2506] Length = 551 Score = 412 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 202/550 (36%), Positives = 317/550 (57%), Gaps = 13/550 (2%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 Q Q + + LG ++ L V L+ ++L +F++ + LY L+ DV RI Sbjct: 8 QAQQIVSNLSQLGPKKLGALGIVGLLVVVLVGLGSYFLSRADMETLYSGLDRQDVTRIGA 67 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 AL+EA I F ++ G ++ P S G+AR+ LA +GLP S N+GYELFD + S GLTSF Sbjct: 68 ALTEAGIPFDVTAEGDAVQTPFSQTGEARMLLAEKGLPR-SENAGYELFDNIGSIGLTSF 126 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 MQE+TRVRALEGEIARTIQ+++ I AARVH+V+ D GSFR+ +P+ASV+IR + Sbjct: 127 MQEVTRVRALEGEIARTIQTLANIRAARVHVVLADEGSFRRERRKPSASVVIRTDGSEDF 186 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIVQAIQHEIEMN 244 SA AIR LVAAA+P + +VTVL+S G LL + E + K I + + +E + Sbjct: 187 GSASAIRSLVAAAIPGMTPQEVTVLNSDGTLLASGEEGVSSAPSKLFGIEKIMSGSVEES 246 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 I + LA +LGV NF+++V A LN D QQI E ++DP+S+VERS+R K+ +S+ + Sbjct: 247 IRRTLAPYLGVGNFQTSVTASLNTDRQQISERIFDPESRVERSVRSMKEMDQSQNTTQNE 306 Query: 305 AVTVEQNMPHVSD--RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 AV +EQ++ + S + +++EE +NYEIN K+I TT + Y++E+LSIAVV Sbjct: 307 AVGIEQDIQAADEVEGAPGGESSSDEKERREELTNYEINEKTIQTTSEGYEVEKLSIAVV 366 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 +N+ RL +G +A ID+ +AEI +V++A+G + RGD + +T++DF++ Sbjct: 367 INRQRLAAAIGENATDTDIDARIAEIESLVASASGYSEARGDQLKVTAVDFVDAAGSLEP 426 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482 F ++ R T+INAL LV +LV + GL R + + E + + Sbjct: 427 IPGPGFSEMFMRQSGTLINALTILVVAVLVIWFGLKPAIRALAAPEPAESEADNDNSIET 486 Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542 V G+ +L +N ++ ++ ++ RL +++I+E + Sbjct: 487 L---QRVGEGMESGSVGSLAPAN-----GTQGFVEDLSG-AARSPQARLEALVDIDENQA 537 Query: 543 AKILRKWARS 552 A +L++W + Sbjct: 538 ANVLKQWLKQ 547 >gi|268589960|ref|ZP_06124181.1| flagellar M-ring protein FliF [Providencia rettgeri DSM 1131] gi|291314677|gb|EFE55130.1| flagellar M-ring protein FliF [Providencia rettgeri DSM 1131] Length = 561 Score = 412 bits (1058), Expect = e-112, Method: Composition-based stats. Identities = 122/532 (22%), Positives = 237/532 (44%), Gaps = 38/532 (7%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 ++ SP Y L L D I L++ N+ ++I+DNGS+I VP+ V + R+ LA Sbjct: 44 LLLWLRSPDYRVLLSNLSAKDGGDIVGQLTQMNVPYQIADNGSAILVPADKVHELRLKLA 103 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 GLP N+G+EL DK FG++ F ++I RALEGE++RTI+S+S + +ARVH+ + Sbjct: 104 QSGLPKGG-NTGFELLDKEQ-FGISQFSEQINYQRALEGELSRTIESLSPVQSARVHLAI 161 Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 P F + PTASV + + + AI H+V+++V L +V ++D G+L Sbjct: 162 PKPTLFVREQKLPTASVTVGLLPGRMLDEGQISAIVHMVSSSVTGLTASNVIIVDQAGRL 221 Query: 217 LTANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LT N+ +++ + + + ++ ++ I L+ +G N + V A+++ + Sbjct: 222 LTNNDNSQQSANSAQIKMTKEMESHLKQRIEDILSPLVGRANIHAQVTAQMDFSKVEQTS 281 Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMP-------------HVSDRK 319 Y P+ + + S+ +S + V N P + + Sbjct: 282 EEYKPNQTPDSAAIRSRQNSQSMQNNNGGTGGVPGALSNQPVSAPSAPIETNKDNKDGAQ 341 Query: 320 VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQG 379 R+ + + +E +NYE++ K T ++RLS+AV+VN G + Sbjct: 342 TANNRNSVSNSQSDETTNYEVDRKISHTQRQIGVVDRLSVAVIVNYHSQDGENG-PEMKP 400 Query: 380 KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATV 439 L +I + A G ++ RGD++ IT+ F + + A + Sbjct: 401 LPPEMLQQIEALTREAMGFSTARGDSLNITNSLFTNEAPVEEAPSLLE----SPQFIAQL 456 Query: 440 INALVFLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498 ++ L+ ++ F+ ++ A++ + + ++ + V + + Sbjct: 457 LDYGKILLIAIIAWFMWRFGIKPQWVKYRKAQQAQAEAEVFVATQLKTPLVVDEAIDEE- 515 Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 D + R + R+++ + Q R+ M E + + A ++R+W Sbjct: 516 -------MDEQTRRRLTRQRVSAEIQSQ---RIREMAEKDPQIVAMVIRQWL 557 >gi|260598447|ref|YP_003211018.1| flagellar MS-ring protein [Cronobacter turicensis z3032] gi|260217624|emb|CBA31913.1| Flagellar M-ring protein [Cronobacter turicensis z3032] Length = 571 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 132/552 (23%), Positives = 235/552 (42%), Gaps = 65/552 (11%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + P Y LY L D I L++ NI + +DNG+SI VP+ V R+ LA QG Sbjct: 46 WAKQPEYRVLYSNLSDQDGGAIVTQLTQMNIPYNFADNGASIMVPAEKVYDLRLRLAQQG 105 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 106 LPKGGA-VGFELMDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPKP 163 Query: 162 GSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT- 218 F + P+ASV + A+ H+V++AV L G+VT++D G+LLT Sbjct: 164 SLFVREQKSPSASVTLSLQPGRTLDDGQVAAVVHMVSSAVAGLPPGNVTLVDQAGRLLTQ 223 Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 + R++ L ++ I+ I LA +G N + V A+++ ++ E Y Sbjct: 224 SGTGARDLNDAQLKYASDVEGRIQRRIESILAPIVGSGNVHAQVTAQIDFSNKEQTEEQY 283 Query: 279 DPDSK----VERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRK--------------- 319 P+S RS +L+ + Q + P N P ++ Sbjct: 284 RPNSDPSQMAVRSRQLNTNDQVGAGN-PGGVPGALSNQPAPANSAPIDAPAGQNANGQNA 342 Query: 320 -----------------VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 S ++ +++E +NYE++ T + ++RLS+AVV Sbjct: 343 NGQNANGQNAQRTQSTSTTGASSGPHSSQRDETTNYEVDRTIRHTKMNVGDVQRLSVAVV 402 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 VN +L G L +I + A G + +RGDT+ + + F + + Sbjct: 403 VNYRQL----GNGKPLALTADQLKQIEDLTREAMGYSDKRGDTLNVVNSPFTAS---DEA 455 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482 ++ F + +++A +LV ++ L A+R + V Sbjct: 456 GAELPFWKQQA-FIDQLLSAGRWLVVLIVAWLLWRKAVRPQLQRRAEEVKRV-------- 506 Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542 + + ++D + R R+++ V Q R+ M + + Sbjct: 507 ----QEIQQQRQEVEESVEVRLSKDEQTQQRRANQRLSAEVMSQ---RIREMSDNDPRVV 559 Query: 543 AKILRKWARSEI 554 A ++R+W +E+ Sbjct: 560 ALVIRQWMSNEL 571 >gi|299131954|ref|ZP_07025149.1| flagellar M-ring protein FliF [Afipia sp. 1NLS2] gi|298592091|gb|EFI52291.1| flagellar M-ring protein FliF [Afipia sp. 1NLS2] Length = 517 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 126/533 (23%), Positives = 228/533 (42%), Gaps = 24/533 (4%) Query: 25 LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSIS 84 + +V + + F V +P LY L D + + L I + + ++G+ I Sbjct: 1 MLAVTMALLGFFGFVILRVTAPQMVTLYTDLSYDDASGVMKELDRQGIPYELKNDGAIIM 60 Query: 85 VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144 VP V + R+ LA GYE+FDK ++ G TSF+Q + +RALEGE+ARTI+ Sbjct: 61 VPKDKVTRLRMKLAEG-GLPKGGGVGYEIFDKSDTLGSTSFVQNVNHLRALEGELARTIK 119 Query: 145 SISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDM 204 SI I A RVH+V+PD F + P+A++++R + AIRHLVA++V L Sbjct: 120 SIDRIQAVRVHLVLPDRPLFSREKPEPSAAIVVRVRGALEPQQVRAIRHLVASSVNGLKP 179 Query: 205 GDVTVLDSTGKLLTANEMERNILGKSLSIVQAI--QHEIEMNINKALAAFLGVDNFRSAV 262 V+++D G+LL + N +G + + I ++ + I + + +G R + Sbjct: 180 QRVSIVDENGQLLADGSGDANGMGDVGADERRIAYENRLRKQIESIVTSVVGAGRARVQL 239 Query: 263 VAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPL 322 A+ + + +DP+ +V RS + +++ + Q VTV MP + ++ Sbjct: 240 SADFDYNKVTETSDKFDPEGRVLRSSQTREESSATSNGQ-NGQVTVNNEMPG-NQQQNAA 297 Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382 + + K EE +NYEI+ + + +++R+S+AV+V+ G + Sbjct: 298 NAGKDQSKKSEEINNYEISRTTKTEVTEAGRVQRVSVAVLVDGTYSKNEKGDMVYAPRSK 357 Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDIL---SRHFATV 439 L I +V +A G RGD + + ++ F E ++ + Sbjct: 358 EDLERIATLVRSAIGFEKNRGDQVDVVNLRFAEAPAAVPLPEPTGWLSVFQFTKDDVMYF 417 Query: 440 INALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNI 499 I V + ++V F+ + L + +D V P ++ V T Sbjct: 418 IELGVMSLLAIVVVFMVVRPLVKRVLAEDPPPASVPALPEAEPAAVAGPVHTAATAQ--- 474 Query: 500 ALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 +++ V QS R+ + + N I+R+W Sbjct: 475 -------------MIDVAQVQGQVHAQSVHRVGELADRNPNETVSIIRQWLTE 514 >gi|148253400|ref|YP_001237985.1| flagellar MS-ring protein [Bradyrhizobium sp. BTAi1] gi|146405573|gb|ABQ34079.1| Flagellar basal body M-ring protein [Bradyrhizobium sp. BTAi1] Length = 535 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 137/549 (24%), Positives = 227/549 (41%), Gaps = 18/549 (3%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + LL F K LG R+ + +V I F V +P L+ L + D + I Sbjct: 1 MQGLLDFLKG---LGAARLTAMIAVTAALIGFFGFVIMRVTAPQMTTLFTDLGMDDSSSI 57 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L I F I + GS I VP V + R+ LA GYE+FDK ++ G T Sbjct: 58 IKDLERQGIPFEIRNEGSVILVPKDKVTRLRMKLAEG-GLPKGGGVGYEIFDKSDALGTT 116 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 SF+Q I +RALEGE+ARTI++I I AARVH+V+P+ F + P+AS+++R Sbjct: 117 SFVQNINHLRALEGELARTIRAIDRIQAARVHLVLPERPLFSRETPEPSASIVVRVRGAL 176 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEM 243 AIRHLVA+AV L V+++D G+LL + + Sbjct: 177 DAAQIRAIRHLVASAVNGLKPQRVSIVDEAGQLLADGTQTDIDQQVGDERRNTFEKRMRK 236 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 + +++ +G R + A+ + + YDP+ +V RS + ++ +S +S+ Sbjct: 237 QVEDIVSSVVGAGRARVQLSADFDFNRITQTSDRYDPEGRVLRSSQTREE--QSASSESN 294 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 VTV +P + + + K EE +NYEI+ + + ++ R+S+AV+V Sbjct: 295 GQVTVNNELPGNQQNQQQQQPPRDQSKKTEETNNYEISRTTKTEVTEAGRVNRISVAVLV 354 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 + G + + L I +V +A G + +RGD + + ++ F + Sbjct: 355 DGAYSKNEKGELVYKERSKEELDRIAALVRSAIGFDQKRGDQVEVVNLKFADAPTVPQIN 414 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 F+ +L V+ + V LL + +R L A P Sbjct: 415 EPSGFLGMLQFTKDDVMYVIELAVMMLLGIVVVFMVVRPLVKKIIASDEVAAALKSAVPA 474 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 L +++ V QS R+ + + N A Sbjct: 475 LTDETAQAQAHAQQTATL------------IDVAQVQGQVHAQSVHRVGELADRNPGEAA 522 Query: 544 KILRKWARS 552 I+R+W Sbjct: 523 AIIRQWLAE 531 >gi|58760481|gb|AAW82147.1| FliF [Stenotrophomonas maltophilia] Length = 545 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 119/553 (21%), Positives = 229/553 (41%), Gaps = 24/553 (4%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ Q+F SL TR L L ++I V + ++ F+ P LY L+ + Sbjct: 13 EKAGQWFDRLQSLQITRRLGLMAMIAVAV---VSVFFWSQKPGMVPLYTGLDQKATAEAT 69 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L A I F + I+VP + AR+ LA GL + S G+EL ++ FG++ Sbjct: 70 DLLRAAQIPFALDPATGGITVPEKNLHDARLKLAGSGL-TDSGKLGFELMERDPGFGVSQ 128 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 F++ ALE E++RTI ++ + +RVH+ +P +F + +ASV + Sbjct: 129 FVESARYQHALETELSRTINTLRPVRDSRVHLAIPKPSAFTRQRDVASASVTLELRGGQQ 188 Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHE 240 + +AI H+VAA++P+L VTV+D +G++L+ E + V+ + Sbjct: 189 LERSQVDAIVHMVAASIPDLAPERVTVVDQSGRMLSITDPNSEAAVNAAQFEQVRRQETS 248 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I + L G V +++ + +Y+ + + RS ++S++ + T Sbjct: 249 FNQRIRELLEPMTGPGRVNPEVSVDMDFSVTEEARELYNGEPQKLRSEQMSENT--TSTP 306 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 P+ N P + P K NYE++ T +++R+S+A Sbjct: 307 GPQGVPGATSNSPPGQ-QAAPATAQTPTESSKNATRNYELDRTLQHTRQPAGRIKRVSVA 365 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 V+V+ G+ + Q + L + +V A G N+ RGDT+++ + F+ + Sbjct: 366 VLVDNVPRAGANGKMSPQPLSAAELTRVEALVKQAVGFNAERGDTVSVMNAPFVRDTTPV 425 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 G V +A L+G ++V L LR + + Sbjct: 426 EGPA--------WWELPWVHDAGRMLLGAVVVLALLFGVLRPALRAITGQ-----NRKND 472 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 P L+ +D + L + D S + + ++ ++ + + Sbjct: 473 EPALEPHTADVQLVDDDGMPLPALGADRASLAGPDALALPVDSYEERLRMAREAVKTDSK 532 Query: 541 RFAKILRKWARSE 553 R A++++ W ++ Sbjct: 533 RVAQVVKGWVAND 545 >gi|167892353|ref|ZP_02479755.1| flagellar MS-ring protein [Burkholderia pseudomallei 7894] Length = 495 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 121/434 (27%), Positives = 199/434 (45%), Gaps = 15/434 (3%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 58 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 117 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++SI+ + AARVH+ +P Sbjct: 118 LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 175 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ V + A+ +V+++VP++ +VT++D G LLT Sbjct: 176 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 235 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 236 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 295 Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH--------VSDRKVPLPRSLEN 328 P+ ++S S+ S S N P S+ + P + Sbjct: 296 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 355 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 +D+K+ +NYE++ ++RLS+AVVVN T+ GR Q LA++ Sbjct: 356 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQV 415 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G + +RGD++ + + F + D++ V Sbjct: 416 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 475 Query: 449 TLLVTFLGLHALRR 462 L ALRR Sbjct: 476 AALYFMFVRPALRR 489 >gi|254470345|ref|ZP_05083749.1| flagellar M-ring protein FliF [Pseudovibrio sp. JE062] gi|211960656|gb|EEA95852.1| flagellar M-ring protein FliF [Pseudovibrio sp. JE062] Length = 528 Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 141/530 (26%), Positives = 249/530 (46%), Gaps = 9/530 (1%) Query: 28 VILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPS 87 + + I LF +P L+ L + D I + + + + NG S+ VP Sbjct: 1 MAALLIGLFSFIIVRATAPQMVPLFTDLTLEDAAAIVSQVESQGVSYELGVNGRSVLVPQ 60 Query: 88 SMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSIS 147 V + R+ LA GLP S GYE+FDK ++ G TSF+Q + R RALEGE++RTI+SI Sbjct: 61 ENVHRLRMTLAEAGLP-SGGGVGYEIFDKTDTLGATSFVQNLNRTRALEGELSRTIRSIG 119 Query: 148 GIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDV 207 I +ARVH+V+P+ F++ PTAS+ I+ AI+HLVA AV L+ V Sbjct: 120 RIASARVHLVIPEKQLFQRDREPPTASIAIKVQGSLTNGQIRAIQHLVATAVEGLEPSYV 179 Query: 208 TVLDSTGKLLTANEMERNILGKSLSIVQA---IQHEIEMNINKALAAFLGVDNFRSAVVA 264 +++D G LL + ++ L S+ + ++ + + + L +G R V A Sbjct: 180 SIVDERGTLLASGTGDKEGLAGGSSLDERRLTMESRLRQQVEEILNNVVGTGRARVRVAA 239 Query: 265 ELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPR 324 E+N + + + ++DPD +V RS + ++ S E V+V +P+ D Sbjct: 240 EINYNRKTETQELFDPDGQVLRSSQSKEENASSTNG--EDTVSVGNQLPNA-DAAGSSAG 296 Query: 325 SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY 384 S ++++ EE NYEI+ ++ ++ LERLS+AV+V+ T G Q + Sbjct: 297 SKDSSNVSEEILNYEISKSTVTEIYEAGGLERLSVAVLVDGTYTTSEDGTQTYQPRSREE 356 Query: 385 LAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN-AL 443 L +I +V A G + RGDT+ + +M F+E L + + D + Sbjct: 357 LEQIATLVRTAVGFSKHRGDTVEVVNMRFVEAPLSDFADGEGGLFDFTRADIMKFAELGV 416 Query: 444 VFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIA-LD 502 +F++ LL+ F ++R+ DD + + G + P + + + ++ Sbjct: 417 LFVITVLLLIFAVSPLMKRILAKDDEPEAAIEGGGVQMLPDGTLVTESPAQVEGIVGEME 476 Query: 503 SSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 + +I + +++ + + + S ++ MIE + I+R W Sbjct: 477 AVPTEIPTAEWIEDAKMQAALHQSSIKQISEMIEDSPSEAVNIVRGWLNE 526 >gi|167917106|ref|ZP_02504197.1| flagellar MS-ring protein [Burkholderia pseudomallei BCC215] Length = 490 Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 121/434 (27%), Positives = 199/434 (45%), Gaps = 15/434 (3%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 56 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 115 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++SI+ + AARVH+ +P Sbjct: 116 LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 173 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ V + A+ +V+++VP++ +VT++D G LLT Sbjct: 174 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 233 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 234 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 293 Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH--------VSDRKVPLPRSLEN 328 P+ ++S S+ S S N P S+ + P + Sbjct: 294 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 353 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 +D+K+ +NYE++ ++RLS+AVVVN T+ GR Q LA++ Sbjct: 354 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQV 413 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G + +RGD++ + + F + D++ V Sbjct: 414 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 473 Query: 449 TLLVTFLGLHALRR 462 L ALRR Sbjct: 474 AALYFMFVRPALRR 487 >gi|167822258|ref|ZP_02453729.1| flagellar MS-ring protein [Burkholderia pseudomallei 9] Length = 488 Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 121/434 (27%), Positives = 199/434 (45%), Gaps = 15/434 (3%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 54 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 113 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++SI+ + AARVH+ +P Sbjct: 114 LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 171 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ V + A+ +V+++VP++ +VT++D G LLT Sbjct: 172 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 231 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 232 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 291 Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH--------VSDRKVPLPRSLEN 328 P+ ++S S+ S S N P S+ + P + Sbjct: 292 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 351 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 +D+K+ +NYE++ ++RLS+AVVVN T+ GR Q LA++ Sbjct: 352 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQV 411 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G + +RGD++ + + F + D++ V Sbjct: 412 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 471 Query: 449 TLLVTFLGLHALRR 462 L ALRR Sbjct: 472 AALYFMFVRPALRR 485 >gi|222053602|ref|YP_002535964.1| flagellar M-ring protein FliF [Geobacter sp. FRC-32] gi|221562891|gb|ACM18863.1| flagellar M-ring protein FliF [Geobacter sp. FRC-32] Length = 522 Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 132/558 (23%), Positives = 245/558 (43%), Gaps = 51/558 (9%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + + L + SL ++ LI+A V ++ F A F N Y L+ L D Sbjct: 1 MPEGLKKLLDPFLSLPTSKRLIVAGVAACSLLAFAALIFVANRTDYRPLFANLTTEDAGE 60 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L + + ++IS +G +I VPS V + R+ LA +GLP G+E+FD+ N FG+ Sbjct: 61 IVKKLKDQKVAYQISADGKAILVPSDKVYELRLSLAGEGLPQGGG-IGFEIFDRKN-FGM 118 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T F+Q++ RAL+GE++RTI ++G+ ARVH+V+P+ F+ PTASV+++ + Sbjct: 119 TEFVQKLNYQRALQGELSRTIAQLAGVEQARVHLVIPEKSLFKDSEKPPTASVVLKMKSN 178 Query: 183 SVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAI 237 + + + HLV++A+ +D +VTVLDS GK+L+ ++ + + Sbjct: 179 RTLRENEVQGVVHLVSSAIEGMDTENVTVLDSRGKVLSRTGPSDATGKLTSTMQETQRNY 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + +E + L +G + V A + + E YDP++ RS + S++ + Sbjct: 239 EKNLEERLQSLLDKVVGSGRSVARVSATFDFKQVEKYEEKYDPETAAVRSEQRSEE-KAG 297 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 T+ V+ NM R P + K +E NYE++ + L ++ Sbjct: 298 ATNIAAGVPGVQTNM----GRTAPGAGTTGGGSKSDETLNYEVSRTTARIIEPVGSLTKV 353 Query: 358 SIAVVVNKGR-----LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 S+A++V+ ++ Q + L +I +V ++ G N+ RGD +T+ ++ Sbjct: 354 SVAILVDGKYEAPAAAKAGAAKAKYQPRTPDELQKIESLVKSSVGFNAERGDQVTVANIP 413 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F E S I+ T++ L+ G + F + L R+ Sbjct: 414 FQETGDMGSAEDAWWNAPIV----MTLLKNLLIAGGFFAIIFFVIKPLMRM--------- 460 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 +P+ + +D+ N + + + L L+ Sbjct: 461 ---------------------LPHRPPSFQPVQEDLEMIQLNEAHKQELALQTLNQLELI 499 Query: 533 HMIEINEERFAKILRKWA 550 ++ + + A+IL+ W Sbjct: 500 EKVKQDPYQVAQILQNWL 517 >gi|271500086|ref|YP_003333111.1| flagellar M-ring protein FliF [Dickeya dadantii Ech586] gi|270343641|gb|ACZ76406.1| flagellar M-ring protein FliF [Dickeya dadantii Ech586] Length = 574 Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 126/557 (22%), Positives = 231/557 (41%), Gaps = 67/557 (12%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 + P Y LY L D I L + NI +R ++NG++I +P+ V + R+ LA Sbjct: 44 LSLWARGPDYRALYTNLNERDGGSIVSELGKMNIPYRFAENGAAILIPADKVYETRLKLA 103 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 QGLP + G+EL D+ FG++ F ++I RALEGE+ART++++ I +ARVH+ + Sbjct: 104 QQGLPKGGA-VGFELLDQE-KFGISQFSEQINYQRALEGELARTMETLGPIQSARVHLAI 161 Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 P F + P+A+V + AI +LV+++V L VTV+D TGKL Sbjct: 162 PKPSLFVREQKSPSAAVTVTLQPGRALDDSQINAITYLVSSSVAGLPADKVTVVDQTGKL 221 Query: 217 LTANEM-ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LT N+ R++ L ++ + I L +G N + V A+++ ++ + Sbjct: 222 LTQNDGSGRDLNAAQLKYANEVESNYQRRIEAILTPVVGAGNVHAQVTAQIDFANREQTD 281 Query: 276 IVYDPDSK----VERSIRLSKDAQRSE----------TSQPESAVTVEQNMPH------- 314 Y P+ RS + S+ QR ++ P A T + P Sbjct: 282 EQYQPNQTPNQAAVRSQQTSQSDQRGGPNVGGVPGALSNTPTPAPTAPISTPPTNNANNA 341 Query: 315 -----------------VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 + + ++++ NYE++ T ++RL Sbjct: 342 NNANNTNNANNANAAGNNTQTSASNSANQTFNSRRDQTINYEVDRTIRHTKQSTGSVQRL 401 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 S+AVVVN + + D L +I +V + G +S RGD++ + + F Sbjct: 402 SVAVVVNYTQGEDGK----PAALSDEQLKKIEALVRESMGFSSDRGDSVNVVNTPFT--- 454 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 + ++ ++ F + F +I A +L+ ++ + +R + Sbjct: 455 VTDTSAGELPFWKKQA-FFDLLIEAGRWLLVLIVGWIMYRKLVRPQLQRRSQIQQAAEAA 513 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 + L +VT M + + + R ++ + Q R+ + E Sbjct: 514 AALRGQDSDVSVTISAMEEE-------------IQKKSEQRAHAEMHSQ---RIRELAEN 557 Query: 538 NEERFAKILRKWARSEI 554 + A ++R W +E+ Sbjct: 558 DPRVVALVIRHWMSNEL 574 >gi|261821173|ref|YP_003259279.1| flagellar MS-ring protein [Pectobacterium wasabiae WPP163] gi|261605186|gb|ACX87672.1| flagellar M-ring protein FliF [Pectobacterium wasabiae WPP163] Length = 569 Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 119/550 (21%), Positives = 241/550 (43%), Gaps = 58/550 (10%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 + P Y LY + D I L++ NI +R ++NG +I +P++ V + R+ LA Sbjct: 44 LTLWAKGPDYRVLYSNINDRDGGAIVSELTKLNIPYRFAENGGAIMIPAANVYETRLRLA 103 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 GLP + G+EL DK FG++ F ++I RALEGE++RTI+++ + ARVH+ + Sbjct: 104 QLGLPKGGA-VGFELLDKE-KFGISQFSEQINYQRALEGELSRTIETLGPVQNARVHLAI 161 Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 P F + P++SV + +I ++V+++V L +VTV+D TG+L Sbjct: 162 PKPSLFVREQKSPSSSVTLTLQPGRALDEGQINSIVYMVSSSVAGLPPDNVTVVDQTGRL 221 Query: 217 LT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LT A R++ L ++ + I +A +G+ N + V A+++ ++ + Sbjct: 222 LTQAGGSGRDMNAAQLKYSNEVEAMYQRRIESIIAPMVGMGNVHAQVTAQIDFSAREQTD 281 Query: 276 IVYDPDSKVERSIRLSKDAQRSE------------------------------TSQPESA 305 Y P+ +++ S+ +SE + A Sbjct: 282 EQYQPNQPPDKAAVRSQQTSQSEQKGGPNVGGVPGALTNQPAPAPTAPIATPPNNANNQA 341 Query: 306 VTVEQNMPHVSDRKVPLPRSLENTD-KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 +QN + + ++ ++ + + +NYE++ + T H ++RLS AV+VN Sbjct: 342 GAGQQNQNNAGGTQANANAVIQTSNVRNDATTNYEVDKTILHTKHSTGGVKRLSAAVIVN 401 Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424 G+ + + +I + A G ++ RGDT+ + + F++N G+ Sbjct: 402 YQP-PGEDGKPV--ALTEDQIKQIETVAREAMGFSTERGDTLNVVNTPFMDN---TEGSS 455 Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPP 484 ++ F + F ++ A +L+ ++ L +R + ++ + L+ Sbjct: 456 ELPFWQKQA-FFDLLMEAGRWLLVLIVAWILWRKLVRPQLRKKELQQEAALAAASLNK-- 512 Query: 485 ISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAK 544 ND+ + + + R Q R+++ + R+ + E + A Sbjct: 513 ----------GNDDDVVVNLSTSEIEQQRKSQQRVSAEMQS---NRIRELAENDPRVVAL 559 Query: 545 ILRKWARSEI 554 ++R+W +E+ Sbjct: 560 VIRQWMSTEL 569 >gi|220935138|ref|YP_002514037.1| flagellar FliF M-ring protein [Thioalkalivibrio sp. HL-EbGR7] gi|219996448|gb|ACL73050.1| flagellar FliF M-ring protein [Thioalkalivibrio sp. HL-EbGR7] Length = 552 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 125/566 (22%), Positives = 234/566 (41%), Gaps = 40/566 (7%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 L + L R + L + + L + ++ P Y LY L + +++ A Sbjct: 8 LSNQVRGFGRLPMERQIGLIVALAAAVALVSSLFMWMTRPSYTVLYPNLAEQESGQVAEA 67 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L NI +R+ +++VP+ + AR+ LA +GLP ++ G+EL ++ G + + Sbjct: 68 LGRHNIPYRLDSATGAVTVPARHLHDARLKLATEGLPRATG-FGFELLEQDQGLGTSRLI 126 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 + RA+EGE+AR+I ++S + +ARVH+ +P F + ++P+ASV++ Sbjct: 127 ENARYHRAIEGELARSIATLSSVESARVHLALPAQSVFVRDRSKPSASVLVNLYAGRTLD 186 Query: 187 S--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEI 241 I HLVA++VP+L+ VTV+D G+LLT + + + L + ++ Sbjct: 187 ESRIAGIVHLVASSVPDLEPERVTVVDQRGRLLTQPAGDVDGVMASTQQLDFTRRMEESY 246 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 I L LG D R+ V A+L+ + +DP+ V RS ++S+D S Sbjct: 247 VRRIMDILTPILGADAVRAQVAADLDFSRIERTTEAFDPEFSVVRSEQISEDE--SRGGG 304 Query: 302 PESAVTVEQNMPHVSD------RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 N P + + + + NYE++ L Sbjct: 305 MMGVPGALTNQPPEAGVIAEEGNGANGQAQVPGSSSRRTVRNYEVDRTVSHIREAPGGLR 364 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 RLSIAVVV+ G + + I +V A G ++RRGD+I + + F Sbjct: 365 RLSIAVVVDHKEERNEAGELERVPFTEQEMERITTLVREAVGFDARRGDSINVINASFRP 424 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL------HNIDDA 469 + + + V++ ++ ++V L L +R L Sbjct: 425 VEALELPPEPPIWQEPW------VVDLAKTILAVIMVIVLALTVVRPLLKGLAERGAAAR 478 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 ++ ++G ++ + G P AL N +N + +++S Sbjct: 479 REDQLGHLALPEGELGEEQLRLGQQPQVQGALPGPNT-----KKNYEDQLDSA------- 526 Query: 530 RLLHMIEINEERFAKILRKWARSEIE 555 M+ + +R A++++ W S+ Sbjct: 527 --RGMVREDPKRVAQLMKTWIASDGA 550 >gi|166712032|ref|ZP_02243239.1| flagellar MS-ring protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 574 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 114/569 (20%), Positives = 239/569 (42%), Gaps = 30/569 (5%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ Q+F SL TR L + ++I + + +A F+ P Y +LY L+ + Sbjct: 15 EKAGQWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAA 74 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L A I ++I +ISVP + AR+ LA GL + G+EL +K FG++ Sbjct: 75 DLLRTAQIPYKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQ 134 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 F++ ALE E++RTI ++ + ARVH+ +P +F + +ASV++ Sbjct: 135 FVENARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQG 194 Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240 + +AI +LVA+++P++ VTV+D +G++L+ + + V+ + Sbjct: 195 LERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESS 254 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I + L G +++ + +Y+ + RS +++ + + + Sbjct: 255 YNQRIRELLEPMTGPGRVNPETSVDMDFSVVEEARELYNGEPAKLRSEQVNDTS--TTAT 312 Query: 301 QPESAVTVEQN--------------MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346 P+ N + + K NYE++ Sbjct: 313 GPQGPPGATSNSPGQPPAPAAAGAPGTPAAANGQATAAAAPTESSKSATRNYELDRTLQH 372 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 T +++R+S+AV+++ G+ +Q + L I +V A G ++ RGDT+ Sbjct: 373 TRQPAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQAVGFDAARGDTV 432 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHN 465 ++ + F+ + + + ++ A V L + F + LR+L Sbjct: 433 SVMNAPFVREAVAGEEGPKWWEDPRVQYGLRLLVGA----VVVLALLFGVVRPTLRQLTG 488 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 + K+ + G + +P ++ +++ L +D S + + I + Sbjct: 489 VTPIKEKQRKGGNDDTPQN----ADVRMVDDEDSLLPQMGEDTASIGQERKPAIALPDAY 544 Query: 526 QSDLRL-LHMIEINEERFAKILRKWARSE 553 + +R+ ++ + +R A++++ W SE Sbjct: 545 EERMRVAREAVKADSKRVAQVVKGWVASE 573 >gi|213419965|ref|ZP_03353031.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 551 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 127/533 (23%), Positives = 227/533 (42%), Gaps = 52/533 (9%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 44 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 103 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 104 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 161 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + A+ HLV++AV L G+VT++D +G LLT Sbjct: 162 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 221 Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 +N R++ L ++ I+ I L+ +G N + V A+L+ ++ E Sbjct: 222 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 281 Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------------HVSDRKV 320 Y P+ ++ S+ SE P N P + + Sbjct: 282 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 341 Query: 321 PLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373 P + N++ + E SNYE++ T + +ERLS+AVVVN L + Sbjct: 342 PQTSTSTNSNNAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP 401 Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433 + +I + A G + +RGDT+ + + F ++ ++ F S Sbjct: 402 L----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDNTGGELPFWQQQS 454 Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493 ++ A +L+ ++ L A+ ++ + + AV L Sbjct: 455 -FIDQLLAAGRWLLVLVVAWILWRKAVHPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRL 512 Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546 ++ + +NQ R+ + V Q R+ M + + A ++ Sbjct: 513 SKDEQLQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVI 551 >gi|167900849|ref|ZP_02488054.1| flagellar MS-ring protein [Burkholderia pseudomallei NCTC 13177] Length = 500 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 121/434 (27%), Positives = 199/434 (45%), Gaps = 15/434 (3%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 56 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 115 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++SI+ + AARVH+ +P Sbjct: 116 LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 173 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ V + A+ +V+++VP++ +VT++D G LLT Sbjct: 174 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 233 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 234 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 293 Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH--------VSDRKVPLPRSLEN 328 P+ ++S S+ S S N P S+ + P + Sbjct: 294 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 353 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 +D+K+ +NYE++ ++RLS+AVVVN T+ GR Q LA++ Sbjct: 354 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQV 413 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G + +RGD++ + + F + D++ V Sbjct: 414 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 473 Query: 449 TLLVTFLGLHALRR 462 L ALRR Sbjct: 474 AALYFMFVRPALRR 487 >gi|167579440|ref|ZP_02372314.1| flagellar MS-ring protein [Burkholderia thailandensis TXDOH] Length = 518 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 122/443 (27%), Positives = 199/443 (44%), Gaps = 15/443 (3%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 78 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 137 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++S++ + AARVH+ +P Sbjct: 138 LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTVESVNAVRAARVHLAIPKP 195 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ V + AI LV+++VP++ +VT++D G LLT Sbjct: 196 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAITRLVSSSVPDMPAKNVTIVDQDGNLLTQ 255 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 256 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYA 315 Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH--------VSDRKVPLPRSLEN 328 P+ ++S S+ S S N P S+ + P + Sbjct: 316 PNGTPQQSAIRSQQTSTSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAAPAATPV 375 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 +D+K+ +NYE++ ++RLS+AVVVN T+ GR Q LA++ Sbjct: 376 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLTADKLAQV 435 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G + +RGD++ + + F + D++ V Sbjct: 436 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 495 Query: 449 TLLVTFLGLHALRRLHNIDDAKK 471 L ALRR Sbjct: 496 AALYFMFVRPALRRAFPPPAEPA 518 >gi|300114783|ref|YP_003761358.1| flagellar M-ring protein FliF [Nitrosococcus watsonii C-113] gi|299540720|gb|ADJ29037.1| flagellar M-ring protein FliF [Nitrosococcus watsonii C-113] Length = 567 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 138/565 (24%), Positives = 263/565 (46%), Gaps = 39/565 (6%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 +L + L + + L I + L + + +P Y +Y + + I Sbjct: 24 RLAALQANIGRLSLQKQVGLLLAIAASVALVVGVVMWALAPTYQVMYGAVTGEEKGEIVA 83 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 AL +ANI++R+++N +I VP+S V + R+ LA +GLP S+++G+EL ++ FG + F Sbjct: 84 ALQKANIEYRLAENTGAIMVPASKVHEVRLQLAMEGLPR-SADTGFELLEQNPGFGASEF 142 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 +++ RALEGE+ARTI +++ + ARVH+ +P F + P+ASV++ Sbjct: 143 LEKARYQRALEGELARTIGTLNNVRNARVHLALPKQSVFIRNRQAPSASVVLDLYAGRAL 202 Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEI 241 AI HLV++++PNL+ VT++D G LLT + +++ + ++ + Sbjct: 203 DPGQVAAITHLVSSSIPNLESSGVTLVDQRGNLLTRQDRSQSLGMTEGQFEYTRRLEEKY 262 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE--- 298 I LA +G D R+ VVAE++ + + Y+P+S RS ++S++ + Sbjct: 263 IRRIQHILAPMIGSDKARAQVVAEVDFTVTEQTQEYYNPESAALRSEQMSEEERTGSRFP 322 Query: 299 -------TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 ++QP + + +P +D + P+ ++ T + NYE++ + Sbjct: 323 QGIPGALSNQPPAEAQAPEVVPEANDDEAPI-EAVPTTRSQRATRNYELDRTISHSRLSP 381 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 + RLS+AV+V++ + + G + + LA++ +V A G N+ RGDTI + + Sbjct: 382 GSIRRLSVAVLVDEKAVADAEGTVSTVPRSPQELAQVTALVKEAVGFNAERGDTINVINA 441 Query: 412 DFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 F+ N+ + + D + V L LL+ + A RRL + Sbjct: 442 PFVPANEEESFPEPSLWQQDWFWQ---AVKQGGGVLAILLLLLGVLRPAFRRLTAL---- 494 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS-RINSYVSKQSDL 529 P S + ++ + D +D S S N + R+ S +++L Sbjct: 495 -------------PESVTLPAIPNKDEEKSDDGLQEDQLSLSSNKPTLRLAGPHSLEANL 541 Query: 530 RL-LHMIEINEERFAKILRKWARSE 553 + M + R A++++ W S+ Sbjct: 542 EIVRDMATGDSRRVAQVVKNWLVSD 566 >gi|78224304|ref|YP_386051.1| flagellar FliF M-ring protein [Geobacter metallireducens GS-15] gi|78195559|gb|ABB33326.1| Flagellar FliF M-ring protein [Geobacter metallireducens GS-15] Length = 527 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 123/564 (21%), Positives = 244/564 (43%), Gaps = 48/564 (8%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + + L + + +L + I+ V+ V I+ F N Y L+ L D Sbjct: 1 MPEGLKKLLEPFMALPPAKRWIVGGVVGVSIIAFALLIMVANRTDYRPLFTNLTTEDAGE 60 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L E + +RI+ +G +I VPS V R+ +A+ GLP G+E+FD+ N FG+ Sbjct: 61 IVTKLKEQKVPYRIAADGKAILVPSDKVYDLRLTMASAGLPQGGG-VGFEIFDRKN-FGM 118 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T F+Q++ RAL+GE++RTI I+G+ ARVH+ +P+ F++ TASV+++ Sbjct: 119 TEFVQKLNYQRALQGELSRTIGQIAGVEQARVHLAIPEKALFKEDEKPATASVVLKVKGN 178 Query: 183 SVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAI 237 + + HLVA+++ ++ VTVLD GKLL+ N + + + + Sbjct: 179 RQLNDSDVQGVVHLVASSIEGMNPEHVTVLDQKGKLLSKNGPTDAAGKMTASMQEVQRTY 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + E + L +G + V A + + E YDP++ V RS + S+++ Sbjct: 239 ERGTEERLQSLLDKAVGSGKSVARVSAVFDFRQVERYEEKYDPET-VVRSEQRSEESMGG 297 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 + + N+ + N K +E NYE++ + T L ++ Sbjct: 298 ANAT-AGVPGAQTNL--GRTPAGAGGATGPNGSKNDETLNYEVSRSTARTIEPVGALSKV 354 Query: 358 SIAVVVNKGRLTEVLGRSA------DQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 S+A++V+ +G+ + + L +I +V A G N+ RGD +T+ ++ Sbjct: 355 SVAILVDGKYDAPAVGKDGKNAKPKYTPRSPAELQQIEALVKGAVGFNAVRGDQVTVANI 414 Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 F + + + + F +++ + G L + + L ++ + Sbjct: 415 PFQDTAEAGTDEGSQWWN---APIFLSLLKNGLIGFGFLALLLFVVRPLMKMLKPEKKTS 471 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 E + ++ + I + +++I + +Q + L Sbjct: 472 FE--------------------------PISTAEETINQIAEVHRAQIQNQTIRQVE--L 503 Query: 532 LHMIEINEERFAKILRKWARSEIE 555 ++ ++ + A+IL+ W R++ + Sbjct: 504 MNKVKEEPYQAAQILQNWLRAKEQ 527 >gi|207728374|ref|YP_002256768.1| flagellar m-ring protein [Ralstonia solanacearum MolK2] gi|206591620|emb|CAQ57232.1| flagellar m-ring protein [Ralstonia solanacearum MolK2] Length = 614 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 133/559 (23%), Positives = 241/559 (43%), Gaps = 54/559 (9%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 + +P Y LY + SD I AL + N+ +R +D S+I VP + V + R+ LAA Sbjct: 65 TLWSRAPDYRVLYSNVADSDGGAIIAALQQMNVPYRFADGDSAIMVPEANVHEVRLKLAA 124 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 QGLP +G+EL + FG + F +++ RALEGE+ARTIQ++ + +ARVH+ + Sbjct: 125 QGLPKGGL-AGFELME-NQKFGTSQFAEQVNYQRALEGELARTIQAMQEVQSARVHLALS 182 Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + A+P+ASV+++ + +AI HLV+++VPNL + +VTV+D +G+LL Sbjct: 183 KPSVFVREQAKPSASVLLKLYPGRMLDRSQVQAIGHLVSSSVPNLPLANVTVVDQSGRLL 242 Query: 218 TAN--EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 +++ + + L+ V+ I+ I L +G DN R+ V A++++D + Sbjct: 243 SSSFQDNASGLDPTQLNYVRDIEQGYIKRIEAILGPVVGDDNVRAQVTADVDLDNTEQMA 302 Query: 276 IVY----DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSD-------------- 317 Y DP + V RS S+ Q +Q N P + Sbjct: 303 ETYRPNQDPANGVVRSTHTSESTQNKAGAQ-GGVPGALSNQPPTAPRMLPTAPAPASQQA 361 Query: 318 ---RKVPLPRSLEN------------------TDKKEEQSNYEINTKSIATTHDNYKLER 356 + ++ N + ++ NYE++ T + R Sbjct: 362 AAGQNGQNGQNAPNGQQQAAAAAGQAATNSVESSARDTTVNYEVDKTVRRTRAAVGTVRR 421 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 LS+AVVVN + + D+ + ++N +V A G +++RGD++ + + F Sbjct: 422 LSVAVVVNYRADGK-----TWKPLSDADMVKLNALVKDAVGYDAKRGDSVNVVNSQFSGT 476 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD--AKKGEV 474 + + + + + +G L++ F + L R N + A V Sbjct: 477 LPMSRDDLPLWKQPEMIHYAIQAAKYGALAIGFLILVFAVIRPLIRSMNKKEELATATFV 536 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 G + PI + P +S D + L ++ +Q + + Sbjct: 537 GREGDDPNAPIITGAAAPAGPELEGP-SASAADGNAVPEELPQLKQNHEFEQKLETMRRI 595 Query: 535 IEINEERFAKILRKWARSE 553 + N A ++++W E Sbjct: 596 AQQNPRAVAAVIKQWVSIE 614 >gi|167835057|ref|ZP_02461940.1| flagellar MS-ring protein [Burkholderia thailandensis MSMB43] Length = 486 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 118/442 (26%), Positives = 198/442 (44%), Gaps = 15/442 (3%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 46 WSRAPDYRVLYSNLSDRDGGAIITALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 105 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++SI+ + AARVH+ +P Sbjct: 106 LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 163 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ V + A+ +V+++VP++ +VT++D G LLT Sbjct: 164 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 223 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N R+ V A+++ + Y Sbjct: 224 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARAQVSADVDFSKIEQTSESYG 283 Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH--------VSDRKVPLPRSLEN 328 P+ ++S S+ + S N P S+ + P + Sbjct: 284 PNGTPQQSAIRSQQTSTATELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 343 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 +D+K+ +NYE++ ++RLS+AVVVN + GR Q LA++ Sbjct: 344 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPAADAKGRVTMQPLAADKLAQV 403 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G + +RGD++ + + F + D++ V Sbjct: 404 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 463 Query: 449 TLLVTFLGLHALRRLHNIDDAK 470 L ALRR Sbjct: 464 AALYFMFVRPALRRAFPPPAQP 485 >gi|269139487|ref|YP_003296188.1| flagellar biosynthesis/type III secretory pathway lipoprotein [Edwardsiella tarda EIB202] gi|267985148|gb|ACY84977.1| flagellar biosynthesis/type III secretory pathway lipoprotein [Edwardsiella tarda EIB202] gi|304559376|gb|ADM42040.1| Flagellar M-ring protein FliF [Edwardsiella tarda FL6-60] Length = 572 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 135/568 (23%), Positives = 242/568 (42%), Gaps = 65/568 (11%) Query: 22 ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81 + L V I + + + +P Y LY + D I L++ NI +R ++NG+ Sbjct: 32 KIPLLLASAVAIAIVVVLALWARAPDYRVLYSNISDRDGGAIVTQLTQMNIPYRFANNGA 91 Query: 82 SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 ++ VP+ V R+ LA QGLP + G+EL D+ FG++ F ++I RALEGE+AR Sbjct: 92 TLMVPADKVYDTRLKLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQINYQRALEGELAR 149 Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAV 199 TI+++ +V+ARVH+ MP F + +P+ASV + AI ++V+++V Sbjct: 150 TIETLGPVVSARVHLAMPKPSLFVREQKQPSASVTLTLEPGRALDDGQINAIVYMVSSSV 209 Query: 200 PNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNF 258 L G+VTV+D G LLT + R++ L ++ ++ I L LG N Sbjct: 210 AGLPPGNVTVVDQFGHLLTQPDGTGRDLNAAQLKFTSEVEGRLQRRIETILQPMLGSGNV 269 Query: 259 RSAVVAELNMDTQQIREIVYDPDSKVERSI--------------RLSKDAQRSETSQPES 304 + V A+L+ +++ + Y P+ ++ +L+ + +++P Sbjct: 270 HAQVTAQLDFASREQTDEEYKPNQLPNQAAIRSQQISQSDQSGGQLNGGVPGALSNEPAP 329 Query: 305 AVTVEQNMP----HVSDRKVPLPR------------SLENTDKKEEQSNYEINTKSIATT 348 T + P + R P P S +++E +NYE++ T Sbjct: 330 PATGNIDKPRSAQGTAGRNTPTPSRSSAISNNGRLTSRNENIRRDETTNYEVDRTIRHTQ 389 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 +ERLS+AVVVN T+ + + +IN +V A G + RGDT+++ Sbjct: 390 ARAGNIERLSVAVVVNYATDTKGK----EIALSQEKMDQINNLVREAMGFSQSRGDTLSV 445 Query: 409 TSMDFL---ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465 + F +N + SF+D+L+ +L+ L+ L ++ + Sbjct: 446 VNTPFNSVEDNGGELPFWQKQSFIDLLT-------TLGRYLLVALVAWLLWRKLVKPMLT 498 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 + P + A + + R LQ R + Sbjct: 499 KQQRAAAAAQQRVDAPPLSVQPA-------------KQPSNEELQQRRKLQQRSTAEAQT 545 Query: 526 QSDLRLLHMIEINEERFAKILRKWARSE 553 + R+ M E + A ++R+W +E Sbjct: 546 E---RVREMAEQDPRVVALVIRQWMSTE 570 >gi|154252631|ref|YP_001413455.1| flagellar M-ring protein FliF [Parvibaculum lavamentivorans DS-1] gi|154156581|gb|ABS63798.1| flagellar M-ring protein FliF [Parvibaculum lavamentivorans DS-1] Length = 552 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 133/553 (24%), Positives = 241/553 (43%), Gaps = 22/553 (3%) Query: 14 GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73 SLG R+ L V + F + + L+ + V D ++ L A + Sbjct: 8 LQSLGTMRLAALGLVAIALFSFFAFIALRMGNEPKALLFSDVGVEDAAKMIAELDAAKVS 67 Query: 74 FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 + + NG I VP + V + R+ LA +GLP + GYE+FD ++ G TSF+Q I +R Sbjct: 68 YELRGNGGMIYVPQADVLRLRMMLAGKGLP-AGGTVGYEIFDNADALGTTSFLQNINHLR 126 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-INPSVYKSAEAIR 192 ALEGE+ARTI++I GI ARVH+V+P+ F + PTAS++++ N + +AI+ Sbjct: 127 ALEGELARTIRAIEGIGGARVHLVLPERELFSRDRREPTASIVLKVSRNSLTTQQVKAIQ 186 Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAIQHEIEMNINKAL 249 +LVA+AV L G V+++D G LL + + + ++ ++ + ++ L Sbjct: 187 YLVASAVDGLSPGRVSIVDERGALLASGVGEDTQSLLVTSVDERRTGYENRLRTHLENIL 246 Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309 +G D R V A+++ + +DP+ +V RS + D S VTV Sbjct: 247 QRVVGADKARVEVTAQMDYNRITQTSDTFDPNGQVVRSTQTVDDNSTSADGAQNDGVTVG 306 Query: 310 QNMPHVS-DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368 N+P+ + S + +++ EE NYEI+ + + +++RLS+AV+V+ Sbjct: 307 NNLPNANLGGAEAETGSRQASNRTEETVNYEISRTTKTEVLEPGRVKRLSVAVLVDGSYA 366 Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN----SGTV 424 + G + + + L +I +V +A G ++ RGD + I ++ F + Sbjct: 367 ADAEGNTVYTPRTEQELGKIEALVKSAIGFDTSRGDQVEIVNLQFAAAPDLDVGLSEEEE 426 Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG----GKSIL 480 FMD + V + L+ L + G++ + Sbjct: 427 AKGFMDFTRAEVMRMAEMAVLTILALVAMLFVLRPMLSRAFSGSTTTGQIAYTNNSAQAV 486 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 P V G +P + + +++ V + S ++ ++ + + Sbjct: 487 LESPDGLDVPAGALP--------APDQLSEDMMIDIAQVAGKVKQSSVRKIGELVTSHPD 538 Query: 541 RFAKILRKWARSE 553 ILR W Sbjct: 539 ESISILRSWLHET 551 >gi|152980320|ref|YP_001353131.1| flagellar MS-ring protein [Janthinobacterium sp. Marseille] gi|151280397|gb|ABR88807.1| flagellar basal-body M-ring protein [Janthinobacterium sp. Marseille] Length = 585 Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 127/588 (21%), Positives = 230/588 (39%), Gaps = 66/588 (11%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 + F R ++L I + +A + P Y L+ D I Sbjct: 24 NMQNSFMDMAKSPNGRKVMLMLGSAAVIAIMIALVLWSQKPEYKVLFSNFSDRDGGAIMS 83 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 +L +N+ ++ ++ G +I VP+ V + R+ LAA+GLP G+EL + G++ F Sbjct: 84 SLQASNVPYKFAEGGGAILVPADKVHEIRLKLAAEGLPKGGG-VGFELME-NQKLGVSQF 141 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 ++++ RALEGE+AR+IQS+ + AARVH+ MP F + +PTASV++ Sbjct: 142 LEQVNFQRALEGELARSIQSVGAVQAARVHLAMPKASVFVRDQQKPTASVLLNLRQGRAL 201 Query: 186 KSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA---NEMERNILGKSLSIVQAIQHE 240 + AI HLVA++VP L +VT++D +G LL+ + L VQ +Q Sbjct: 202 DQQQVSAIVHLVASSVPELSPKNVTIVDQSGNLLSETNKPAGSNTLDPSQLKYVQELQQS 261 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV----ERSIRLSKDAQR 296 I I + +G N R+ A+++ T + +Y P+ RS++ S+ Sbjct: 262 ITKRIESIITPIVGASNIRAEATADVDFSTSEQAAEIYKPNQVPNSATVRSLQTSESRGN 321 Query: 297 SE---------TSQPESAVTVEQNMPHVSDRKVPLPRSLENTD----------------- 330 T+QP T P ++ P + Sbjct: 322 GTGASGVPGALTNQPAPNATAPLTAPPLAADGTPSTATNPPAPGTPAAAAAAAAAATAAA 381 Query: 331 -----KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385 +K+ +N+E++ L+RLS+AVVVN R+ G+ ++ Sbjct: 382 NATPTQKDTTTNFEVDKTVRYVQQPMGGLKRLSVAVVVNYKRVVAKDGKVTIAPLSETEK 441 Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445 +I +V A G N RGDT+ + + F + + + I A + Sbjct: 442 NQITDLVKEAMGYNKDRGDTLNVVNSPFAGVEKDEIVQPPLWERPEI---IEMAIQAAKY 498 Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505 L +++ L L+ + N K + + + A+ + D + Sbjct: 499 LAIGIVLFLLYRKLLKPMLN----KLNPPPPEPLALEDESAEALEKMHLEEDGKPMG--- 551 Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 Q + + + + + A I++ W ++ Sbjct: 552 -----IQNTYQQNLEAA---------KELARKDPKVVANIVKSWVGND 585 >gi|251789188|ref|YP_003003909.1| flagellar MS-ring protein [Dickeya zeae Ech1591] gi|247537809|gb|ACT06430.1| flagellar M-ring protein FliF [Dickeya zeae Ech1591] Length = 568 Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 127/551 (23%), Positives = 227/551 (41%), Gaps = 61/551 (11%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 + P Y LY L D I L + NI +R +++G++I +P+ V + R+ LA Sbjct: 44 LSLWARGPDYRVLYTNLNERDGGSIVSELGKMNIPYRFTESGAAIMIPADKVYETRLKLA 103 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 QGLP + G+EL D+ FG++ F ++I RALEGE+ART++++ I ARVH+ + Sbjct: 104 QQGLPKGGA-VGFELLDQE-KFGISQFSEQINYQRALEGELARTMETLGPIQNARVHLAI 161 Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 P F + P+A+V + AI +LV+++V L VTV+D TGKL Sbjct: 162 PKPSLFVREQKSPSAAVTVTLQPGRALDDNQINAITYLVSSSVAGLPADKVTVVDQTGKL 221 Query: 217 LTANEM-ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LT N+ R++ L I+ + I LA +G N + V A+++ ++ + Sbjct: 222 LTQNDGSGRDLNAAQLKYANEIEGNYQRRIEAILAPVVGAGNVHAQVTAQIDFANREQTD 281 Query: 276 IVYDPDSKV--------------ERSIRLSKDAQRSETSQPESAVTVEQNMPH------- 314 Y P+ +R + ++ P A T + P Sbjct: 282 EQYQPNQSPNQSAVRSQQSSQSDQRGGSNVGGVPGALSNTPSPAPTAPISTPPANNANNT 341 Query: 315 -----------VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 + + + ++ NYE++ T ++RLS+AVVV Sbjct: 342 NNTNNTNTAGTNTQTSGNNAANQTYNSRHDQTINYEVDRTIRHTKQSTGNIQRLSVAVVV 401 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 N + + D L +I +V + G ++ RGD++ + + F Sbjct: 402 NYTQGEDGK----PAALSDEQLKKIEALVRESMGFSTERGDSLNVVNTPFTITDTSGGEL 457 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 A LV +VG +L L L+R I +A Sbjct: 458 PFWQKQVFFDLLTAAGRWLLVLIVGWILYRKLVRPQLQRRVQIQEAA------------- 504 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 ++A G P+ ++ + S +++ + + R ++ + Q R+ + E + A Sbjct: 505 -AAAAALRGQDPDVSVTISSMEEEL---QKKSEQRAHTEMHSQ---RIRELAENDPRVVA 557 Query: 544 KILRKWARSEI 554 ++R W +E+ Sbjct: 558 LVIRHWMSNEL 568 >gi|300696960|ref|YP_003747621.1| FliF: flagellar biosynthesis protein, M-ring protein, Belongs to the fliF family [Ralstonia solanacearum CFBP2957] gi|299073684|emb|CBJ53204.1| FliF: Flagellar biosynthesis protein, M-ring protein, Belongs to the fliF family [Ralstonia solanacearum CFBP2957] Length = 616 Score = 408 bits (1049), Expect = e-111, Method: Composition-based stats. Identities = 133/561 (23%), Positives = 242/561 (43%), Gaps = 56/561 (9%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 + +P Y LY + SD I AL + N+ +R +D GS+I VP + V +AR+ LAA Sbjct: 65 TLWSRAPDYRVLYSNVADSDGGAIIAALQQMNVPYRFADGGSAIMVPEANVHEARLKLAA 124 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 QGLP +G+EL + FG + F +++ RALEGE+ARTIQ++ + +ARVH+ + Sbjct: 125 QGLPKGGL-AGFELME-NQKFGTSQFAEQVNYQRALEGELARTIQAMQEVQSARVHLALS 182 Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + +P+ASV+++ + +AI HL++++VPNL + +VTV+D +G+LL Sbjct: 183 KPSVFVREQVKPSASVLLKLYPGRMLDRSQVQAIGHLLSSSVPNLPLANVTVVDQSGRLL 242 Query: 218 TAN--EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 +++ + + L+ V+ I+ I L +G DN R+ V A++++D + Sbjct: 243 SSSFQDNASGLDPTQLNYVRDIEQGYIKRIEAILGPVVGEDNVRAQVTADVDLDNTEQMA 302 Query: 276 IVY----DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVP---------- 321 Y DP + V RS S+ +S+ N P + R +P Sbjct: 303 ETYRPNQDPANGVVRSTHTSEST-QSKAGAQGGVPGALSNQPPTAPRMLPTAPAPASQQA 361 Query: 322 ---------------------------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 + + ++ NYE++ T + Sbjct: 362 AAGQNGQNGQNGPNAQNGQQQGAATGQAATNNVESSARDTTVNYEVDKTVRRTRAAVGTV 421 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 RLS+AVVVN + + D+ + ++N +V A G +++RGD++ + + F Sbjct: 422 RRLSVAVVVNYRADGK-----TWKPLSDADMVKLNALVKDAVGYDAKRGDSVNVVNSQFS 476 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD--AKKG 472 + + + + + +G L++ F + L R N + A Sbjct: 477 GTLPTSKDDLPLWKQPEMIHYAIQAAKYGALAIGFLILVFAVIRPLIRSMNKKEELATAT 536 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 VG + PI + P +S D + L ++ +Q + Sbjct: 537 FVGREGDDPNAPIITGAAAPAGPELEGP-SASAADGNAVPEELPQLKQNHEFEQKLETMR 595 Query: 533 HMIEINEERFAKILRKWARSE 553 + + N A ++++W E Sbjct: 596 RIAQQNPRAVAAVIKQWVSIE 616 >gi|190574239|ref|YP_001972084.1| flagellar MS-ring protein [Stenotrophomonas maltophilia K279a] gi|190012161|emb|CAQ45784.1| putative flagellar M-ring protein [Stenotrophomonas maltophilia K279a] Length = 548 Score = 408 bits (1049), Expect = e-111, Method: Composition-based stats. Identities = 121/553 (21%), Positives = 232/553 (41%), Gaps = 21/553 (3%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ Q+F SL TR L L ++I V + ++ F+ P LY L+ + Sbjct: 13 EKAGQWFDRLQSLQITRRLGLMAMIAVAVAAGLSVFFWSQKPGMVPLYTGLDQKATAEAT 72 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L A I F + I+VP + AR+ LA GL + S G+EL ++ FG++ Sbjct: 73 DLLRAAQIPFALDPATGGITVPEKNLHDARLKLAGSGL-TDSGKLGFELMERDPGFGVSQ 131 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 F++ ALE E++RTI ++ + +RVH+ +P +F + +ASV + Sbjct: 132 FVESARYQHALETELSRTINTLRPVRDSRVHLAIPKPSAFTRQRDVASASVTLELRGGQQ 191 Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHE 240 + +AI H+VAA++P+L VTV+D +G++L+ E + V+ + Sbjct: 192 LERSQVDAIVHMVAASIPDLAPERVTVVDQSGRMLSITDPNSEAAVNAAQFEQVRRQETS 251 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I + L G V +++ + +Y+ + + RS ++S++ + T Sbjct: 252 FNQRIRELLEPMTGPGRVNPEVSVDMDFSVTEEARELYNGEPQKLRSEQMSENT--TSTP 309 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 P+ N P + P K NYE++ T +++R+S+A Sbjct: 310 GPQGVPGATSNSPPGQ-QAAPATAQTPTESSKNATRNYELDRTLQHTRQPAGRIKRVSVA 368 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 V+V+ G+ + Q + L + +V A G N+ RGDT+++ + F+ + Sbjct: 369 VLVDNVPRAGANGKMSPQPLSAAELTRVEALVKQAVGFNAERGDTVSVMNAPFVRDTTPV 428 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 G V +A L+G ++V L LR + + ++ Sbjct: 429 EGPA--------WWELPWVHDAGRMLLGAVVVLALLFGVLRPALRAITGQNKKNDEPALE 480 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 V MP + D ++ + L ++SY + R ++ + + Sbjct: 481 PHTADVQLVDDDGMPLPALGADRAS---LAGPDALALPVDSYEERLRMAR--EAVKTDSK 535 Query: 541 RFAKILRKWARSE 553 R A++++ W ++ Sbjct: 536 RVAQVVKGWVAND 548 >gi|83309602|ref|YP_419866.1| flagellar MS-ring protein [Magnetospirillum magneticum AMB-1] gi|82944443|dbj|BAE49307.1| Flagellar biosynthesis/type III secretory pathway lipoprotein [Magnetospirillum magneticum AMB-1] Length = 574 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 146/556 (26%), Positives = 263/556 (47%), Gaps = 9/556 (1%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 D + F + LG R+ +A V + + F+ V +P + LY L++ D +I Sbjct: 20 DDVNAFLQMLRGLGPMRLAAIAGVGVSILGFFIYLMSRVAAPQMELLYGDLDLGDSKQII 79 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L+ I + + +G+ + VP R+ +A Q LP+ +GYELFDK ++ G TS Sbjct: 80 EKLTADKIPYELRKDGTEVWVPKDRKLDLRVRMAEQALPAGGRMAGYELFDKQDALGSTS 139 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 F Q IT VRALEGE+++TI+SI + AARVH+V+P +F + P+ASV+I+ Sbjct: 140 FQQNITMVRALEGELSKTIRSIDRVKAARVHLVLPKREAFSRDTQEPSASVIIKMNGAQR 199 Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL--SIVQAIQHE 240 AI+HL+AAAVP + ++++D G LL + + + Sbjct: 200 LDKGQVSAIQHLIAAAVPKMKPSRISIVDDKGTLLAKGFENSKEYQAQTAEEMKVKTEAK 259 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 + I L LG R+ V +++M E +DP++KV RS + ++S+ + Sbjct: 260 LVKTIEDLLERSLGPGRVRAEVTVDMDMSQATTTEETFDPETKVVRSQVTVNEGEQSQDA 319 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 +P + VTV+QN+P + R+ +K +E NYEI+ K+ +T + ++ ++S A Sbjct: 320 EP-TPVTVQQNLPDPNASSSGNIRTSTKINKNQETVNYEISRKTKSTVREMGEIRKVSAA 378 Query: 361 VVVNKGRLTEVLGR-SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 V+V+ R G+ ++ + + L++I +V +A G R D + + SM F + + Sbjct: 379 VIVDGVREQSADGKQTSYRERTAEELSQIEALVKSAIGYTKDRDDQVKVASMPFYKGEEL 438 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG--GK 477 F+ + R F I + + + + FL L + ++ +G+VG G+ Sbjct: 439 LQAEEPGEFIFGMRRDFVEKIAS-NLGLSVVAILFLLLVLRPLISRAIESMQGQVGPDGR 497 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 +L+ + TG A +++ + ++ V S ++ ++E Sbjct: 498 RLLTTDGGAMPQLTGPGAAAMPAPLGGEEEVIADELIDIDKVEGRVKASSIRKIGEIVEK 557 Query: 538 NEERFAKILRKWARSE 553 + E I+R W E Sbjct: 558 HPEEALSIIRNWLYQE 573 >gi|307822872|ref|ZP_07653103.1| flagellar M-ring protein FliF [Methylobacter tundripaludum SV96] gi|307736476|gb|EFO07322.1| flagellar M-ring protein FliF [Methylobacter tundripaludum SV96] Length = 611 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 137/572 (23%), Positives = 245/572 (42%), Gaps = 36/572 (6%) Query: 12 KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71 K L R + L + + + + +A + P Y LY ++ SDV+ I L++ N Sbjct: 45 KGLAGLTIARQIGLMLGLALSVAIGVAIVLWSQEPSYGRLYSEIGESDVSEILEILNKEN 104 Query: 72 IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131 I +++ +I VP V ++ LAAQGLP S+S GYEL DK FG + ++ + Sbjct: 105 IKYKVETGSGAIMVPMDQVSAVKLKLAAQGLPKSNS-LGYELLDKEQGFGASKGVETVRF 163 Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAE 189 RALEGEIARTI SI + ARV + +P F + +P+ASV++ E Sbjct: 164 QRALEGEIARTIMSIQNVKTARVLLAIPAQSVFVRERKKPSASVIVNLYQGRSLDKGQVE 223 Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNINK 247 +I HLVA++VP L+ VTV+D G+LL +N+ N+ K + I+ + I Sbjct: 224 SIIHLVASSVPQLEAEQVTVVDQKGQLLNSNDSSVAGNLTSKQFEYKKNIEEHLMGRIEN 283 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVT 307 L+ +G D R + A+++ + +++PD RS + S++ +S S + Sbjct: 284 ILSPLVGSDGMRVQISADVDFTETDRTQEMFNPDLPALRSEQTSEE--QSTQSAIQGVPG 341 Query: 308 VEQNMPHVSDRKVPLPRSLE-------------------NTDKKEEQSNYEINTKSIATT 348 N P + + + K NYE++ T Sbjct: 342 ALSNQPTPAGAAPDPAAAPAAPGSSATTAAAAPTSTATPGSAAKNATRNYELDKTITHTR 401 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 L RLS+AVVV+ + + G Q + + +V A G +S RGD +T+ Sbjct: 402 LATGALRRLSVAVVVDDRHVPQSDGTVKGQSYSQEDINRFSDLVKQAVGFDSSRGDQVTV 461 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNID 467 T++ F ++L + + F ++ + ++ L + F L +R L D Sbjct: 462 TNVTFKIDELIEALPAIPVWEQG---WFLDLMKQVAAVLAVLFLLFGVLRPTMRSLVGRD 518 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRN---LQSRINSYVS 524 +K + +A+ + Q++ N +Q + V Sbjct: 519 IEEKKALALAEAQEKAIAIGGSVRFNDQGAPVAVPAGQQNVSFAKPNEMEMQDLLLLDVP 578 Query: 525 KQSDLRLL---HMIEINEERFAKILRKWARSE 553 + + RL +++ + + A++++ W + + Sbjct: 579 QSYEHRLEYVKRLVDDDSKVVAQVIKSWIKKD 610 >gi|238920311|ref|YP_002933826.1| flagellar MS-ring protein [Edwardsiella ictaluri 93-146] gi|238869880|gb|ACR69591.1| flagellar M-ring protein FliF, putative [Edwardsiella ictaluri 93-146] Length = 569 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 131/562 (23%), Positives = 232/562 (41%), Gaps = 56/562 (9%) Query: 22 ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81 + L V I + + + +P Y LY + D I L++ NI +R ++NG+ Sbjct: 32 KIPLLLASAVAIAIVVVLALWARAPDYRVLYSNISDRDGGAIVTQLTQMNIPYRFANNGT 91 Query: 82 SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 ++ VP+S V R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE+AR Sbjct: 92 TLMVPASDVYATRLKLAQQGLPRGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELAR 149 Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAV 199 TI+++ +V+ARV + P F + +P+ASV + V AI ++V+++V Sbjct: 150 TIETLGPVVSARVLLAEPKPSLFVREQKQPSASVTLTLEPGRVLDDGQINAIVYMVSSSV 209 Query: 200 PNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNF 258 L G+VTV+D G LL+ + R++ L ++ ++ I L LG N Sbjct: 210 AGLPPGNVTVVDQYGHLLSQPDGTGRDLNAAQLKFTAEVESRLQRRIETILQPMLGNGNV 269 Query: 259 RSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS---QPESAVTVEQNMPHV 315 + V A+L+ +++ + Y P+ ++ SK +S+ S Q N P Sbjct: 270 HAQVTAQLDFASREQTDEEYTPNQPPNQAAVRSKQINQSDQSGGLQSGGVPGALSNEPAP 329 Query: 316 SDR------------------------KVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + S +++E NYE++ T Sbjct: 330 APTGHINGKPRSAQGGNGAANRSNAVSNNGRQSSRSENFRRDETINYEVDRTIRHTKARA 389 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 +ERLS+AVVVN T+ + + +IN +V A G + RGDT+++ + Sbjct: 390 GTIERLSVAVVVNYASDTKGK----EVALSQQKMDQINNLVREAMGFSQSRGDTLSVVNT 445 Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 F + N G + T+ +L+ L+ L ++ L Sbjct: 446 PFNSVE-DNGGELPFWQKQAFIDLLTTL---GRYLLVALVAWLLWRKLVKPLLTKQQQAA 501 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 ++ P + + + R LQ R + + R+ Sbjct: 502 AAAQQRADTPPLSAQPS-------------KQLSNEELQQRRKLQQRSTAEAQTE---RV 545 Query: 532 LHMIEINEERFAKILRKWARSE 553 M E + A ++R+W +E Sbjct: 546 REMAEQDPRVVALVIRQWMSTE 567 >gi|254294565|ref|YP_003060588.1| flagellar M-ring protein FliF [Hirschia baltica ATCC 49814] gi|254043096|gb|ACT59891.1| flagellar M-ring protein FliF [Hirschia baltica ATCC 49814] Length = 568 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 146/564 (25%), Positives = 267/564 (47%), Gaps = 15/564 (2%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + + + K T+ G+ RI+ A +++ + + LY L++++ I Sbjct: 1 MAETVSIIKKITNGGQMRIIA-ALMVVALVGAGLGFIMLRGGADEALLYSGLDLTESAEI 59 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 S L +ANI + I +G+SI V V AR+ L+ +GLP+ + GYE+FDK + G T Sbjct: 60 SGRLDQANISYTIRGDGASIFVNRDQVLDARMMLSEEGLPTRGA-MGYEIFDKSEALGTT 118 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-RAINP 182 SF+Q I RVRALEGE+ARTI S+ I +RVH+V+P+ F + P+ASV+I A Sbjct: 119 SFVQNINRVRALEGELARTISSLDNIRGSRVHLVLPERRLFERGTQTPSASVVISVAGRG 178 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQH 239 + AIR+L+A +VPNL++ +T+LD G+LL A G + I+ Sbjct: 179 MLPSQVRAIRNLIAGSVPNLEVNRITLLDDKGRLLAAGAENSENGFSGGSADERQTGIED 238 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 +I + + + G R V A+++ + ++DP+ +V RS ++D+ R + Sbjct: 239 QIRNKVLSVVESVTGPGAARVQVAADIDFNRITQSSEIFDPEGRVIRSSTTTEDSSRESS 298 Query: 300 SQPESAVTVEQNMPHVSDRKVPL-PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 ++P AVT E N+P + P P S T+ +E +NYEI+ + + ++ ++S Sbjct: 299 TEPAGAVTAENNIPAGTAADGPADPTSQAETNHLQETTNYEISKTTKTEITEGGRIRKIS 358 Query: 359 IAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 +AV ++ R+ + + +A I +V +A G + RGD + + ++ F+ + Sbjct: 359 VAVALDDVRVPGADETEATFAPRTPEEIANIKTLVRSAVGYDEARGDIVEVVNVSFMRPE 418 Query: 418 LFNSGTVQVSFMDILSRH-FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476 + ++ M L+++ + VG +L+ L L + A+ G+ Sbjct: 419 SSVNLAIEDPGMLGLTKNDIMRISELAALFVGAVLLIIFVLRPLVKGLMSPSAESGDSFY 478 Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ------SRINSYVSKQSDLR 530 P S + ++N+ L S +RI+ V+ S + Sbjct: 479 VGEAKLPGGSGNAAQKVTLSENLVLPGSGDGGNGQITEDDQFGLDVARISGKVNASSVKK 538 Query: 531 LLHMIEINEERFAKILRKWARSEI 554 + ++E + + +I+R W + Sbjct: 539 ISEVVESHPDESIQIIRAWLSEDH 562 >gi|146307847|ref|YP_001188312.1| flagellar MS-ring protein [Pseudomonas mendocina ymp] gi|145576048|gb|ABP85580.1| flagellar M-ring protein FliF [Pseudomonas mendocina ymp] Length = 594 Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 124/591 (20%), Positives = 242/591 (40%), Gaps = 65/591 (10%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + R L L + + + A + P Y LY L D ++ L Sbjct: 25 LSFLENLAEMSVLRQLGLLVGLAASVAIGFAVVLWSQQPDYRPLYGSLNGLDATQVVETL 84 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + A I++ + N ++ V + + +AR+ LAA G+ + ++ G+E+ D+ G + FM+ Sbjct: 85 NAAGINYTVEPNSGALLVKADDLSRARLRLAAAGVAPTDNSVGFEILDREQGLGTSQFME 144 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 R LEGE+ART+ S++ + AARVH+ MP F + +P+ASV++ + Sbjct: 145 ATRYRRGLEGELARTVSSLNNVKAARVHLAMPKASVFVRDERKPSASVLVELYPGRALEP 204 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIEM 243 AI +LVA +VP LD G VTV+D G LL+ + E + GK + ++ Sbjct: 205 SQVMAIVNLVATSVPELDKGQVTVVDQKGNLLSDQQELSELTMAGKQFDYTRRMETLFTQ 264 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 ++ L LG +++ V A+++ + + +++PD RS + + ++S + P+ Sbjct: 265 RVHNILQPVLGTGRYKAEVSADVDFSSVESTSEMFNPDQPALRSEQQVNEQRQS-SLPPQ 323 Query: 304 SAVTVEQNM--------------------------------PHVSDRKVPLP--RSLENT 329 N ++D P Sbjct: 324 GVPGALSNQPPGAAAAPEQAGGAAGAAGPVAPGQPLVDANGQQITDPITGQPMLAPYPAD 383 Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLS-IAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 +++ N+E++ T +L RLS VV ++ R+ G + LA Sbjct: 384 KREQSTRNFELDRSISYTKQQQGRLRRLSVAVVVDDQVRVDPATGEANRVPWSADDLARF 443 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALV 444 ++V + G ++ RGD++++ + F + + Q F DI+ + Sbjct: 444 TRLVQDSVGFDASRGDSVSVINTAFTASLGEEIPDIPFYTQPWFWDIVKQ---------- 493 Query: 445 FLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSS 504 ++G L + L LR + N G A G + D ++L Sbjct: 494 -VLGVLFILVLVFGVLRPVLNNITGGGKGKGLAETGDVELGEMAGLDGELSEDRVSLGGP 552 Query: 505 NQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + S S +++N+ + ++ + R A+++++W ++ Sbjct: 553 QSILLPSPSEGYDAQLNA---------IKSLVAEDPGRVAQVVKEWINADE 594 >gi|91978309|ref|YP_570968.1| flagellar MS-ring protein [Rhodopseudomonas palustris BisB5] gi|91684765|gb|ABE41067.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris BisB5] Length = 532 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 148/551 (26%), Positives = 245/551 (44%), Gaps = 23/551 (4%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + LL F K LG R++ + +V + + F V+ P LY L V D + I Sbjct: 1 MQSLLGFLKG---LGAARVMAMIAVTVALLGFFAFVIMRVSQPQMTTLYTDLSVEDSSSI 57 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L I F + + G+++ VP V + R+ LA GYE+FDK ++ G T Sbjct: 58 IKELERQAIPFEMRNEGTTLMVPKDKVTRLRMKLAEG-GLPKGGGVGYEIFDKSDALGTT 116 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 SF+Q I +RALEGE+ARTI++I I ARVH+V+P+ F + P+AS+++R Sbjct: 117 SFVQNINHLRALEGELARTIRAIDRIQQARVHLVLPERPLFSRETPEPSASIVLRVRGAL 176 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQA--IQHEI 241 + AIRHLVA+AV L V+++D G+LL N + + + + Sbjct: 177 EPQQVRAIRHLVASAVNGLKPQRVSIVDEGGQLLADGSASANAADGAAGDERRTSFEKRM 236 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 I +++ +G R V A+ + + +DP+ +V RS + ++ +S+TS Sbjct: 237 RNEIEGIVSSVVGSGRARVQVTADFDYNKITQTSDKFDPEGRVLRSSQTREE--QSQTSA 294 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 + VTV +P + PR + + K EE +NYEI+ + + ++ RLS+AV Sbjct: 295 ADGQVTVNNELPGNQGQAGTGPR--DQSKKSEETNNYEISRITKTEVTEAGRVNRLSVAV 352 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 +V+ G + L I +V +A G + +RGD I + ++ F E Sbjct: 353 LVDGIYTKNEKGELVYAERPKEQLDRIAALVRSAIGFDQKRGDQIEVVNLKFAEAPQVEK 412 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 Q + + ++N + V +L + +R L A G Sbjct: 413 LPEQAGLLGMFQFTKDDIMNMIQLGVMLVLGLVVLFMVIRPLVKRVLASDPGPEG----- 467 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 P A+T G +P I D Q S +++ V QS R+ + + N Sbjct: 468 --PGLPALTDGSVPQ--IGADGQPQ----PSMIDIAQVQGQVHAQSVHRVGELADRNPNE 519 Query: 542 FAKILRKWARS 552 A I+R+W Sbjct: 520 TAAIVRQWLAE 530 >gi|300311375|ref|YP_003775467.1| hypothetical protein Hsero_2059 [Herbaspirillum seropedicae SmR1] gi|300074160|gb|ADJ63559.1| hypothetical protein Hsero_2059 [Herbaspirillum seropedicae SmR1] Length = 569 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 132/548 (24%), Positives = 237/548 (43%), Gaps = 48/548 (8%) Query: 38 AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97 + Y L+ D I +L + N+ ++ SD G++I VP +MV AR+ L Sbjct: 38 GIWLWSQKVEYRVLFSNFNDRDGGAIVASLQQMNVPYKYSDGGTAILVPENMVHDARLKL 97 Query: 98 AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 AAQGLP N G+EL + G++ F++++ RALEGE+AR++ S++ + ARVH+ Sbjct: 98 AAQGLPKGG-NVGFELME-NQKLGISQFLEQVNFQRALEGELARSVGSLASVQTARVHLA 155 Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 +P F + +PTASV++ + AI HLVA++VP L VT++D G Sbjct: 156 LPKASVFVRDQQKPTASVVLSLYPGRYLDPQQVSAIVHLVASSVPELSPKAVTIVDQNGN 215 Query: 216 LLTANEME---RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272 LL+ + + L VQ +Q +I + +A +G N R+ A+++ + Sbjct: 216 LLSDTTKQAQPNTLDPTQLKYVQDMQQDIVKRVESIIAPIVGNGNVRAEATADVDFSRSE 275 Query: 273 IREIVYDP----DSKVERSIRLSKDAQRSE---------TSQPESAVTVEQNMPHVSDRK 319 Y P DS RS + S+ S ++QP + T P V++ Sbjct: 276 QASEAYKPNQTKDSAAVRSKQSSEANSASNGTSGVPGALSNQPPAPATAPIVNPAVANGA 335 Query: 320 VPLPR-----------SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368 + +K+E NYE++ T + RL++AVVVN R Sbjct: 336 ANQTGAATPNGALPTPTATGNSRKDETINYEVDKTVRYTQQPMGGVRRLTVAVVVNYKRT 395 Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSF 428 + G+ + ++ +I +V A G N RGD++ + + F + + Sbjct: 396 MDNTGKIVMRPLTEAERNQITDLVKEAMGYNKDRGDSLNVVNTQFSTDMEPEVPLWKQPG 455 Query: 429 MDILSRHFATVINALVFLVGTLLVTFLGLHALRRL---HNIDDAKKGEVGGKSILSPPPI 485 M L++ +++ ++ FL LR + + + ++ K+ Sbjct: 456 MIDLAKEIG------KYVLVAAVLLFLYFRVLRPIVWKLSGREERERLAKEKAEAEAAAA 509 Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545 ++AV G P+D A+ + + + Q + N +KQ + + + A I Sbjct: 510 AAAVAAGFDPDDPDAIVNLSGE-SEVDERAQYKANLETAKQW-------AKNDPKLVASI 561 Query: 546 LRKWARSE 553 ++ W +E Sbjct: 562 IKSWVNNE 569 >gi|325981191|ref|YP_004293593.1| flagellar M-ring protein FliF [Nitrosomonas sp. AL212] gi|325530710|gb|ADZ25431.1| flagellar M-ring protein FliF [Nitrosomonas sp. AL212] Length = 571 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 134/571 (23%), Positives = 228/571 (39%), Gaps = 49/571 (8%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 + +SL + L L + I L + A + +P Y LY L D I AL Sbjct: 17 NRLEHLSSLSNQKKLGLITSAAAVIALLVGALMWSQAPEYRALYNNLSDHDGAAIISALQ 76 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 + N+ + S++G +I +P V + R+ LA QGLP G+EL + FG + F+++ Sbjct: 77 QMNVPYTFSESGGTILIPEKQVHEVRLKLAGQGLPKGGL-VGFELME-NQKFGSSQFLEQ 134 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--K 186 + RALEGE+AR++QS+S + +ARVH+ + F + +P+ SV++ V + Sbjct: 135 VNYQRALEGELARSVQSLSAVQSARVHLAIAKPSVFSREKQQPSVSVLLNLYPGRVLSIE 194 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKSLSIVQAIQHEIEM 243 AI HL+A++VPNL + +VTV+D G LL++ + K L+ +Q ++ Sbjct: 195 QVSAIVHLMASSVPNLPVKNVTVVDQNGNLLSSQNDKKEDSRFDAKQLAYIQELEENYIR 254 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS-KVERSIRLSKDAQRSE---- 298 I L G N R+ V A+++ + E Y P++ + +R+ S+ S Sbjct: 255 RIETILTPITGATNVRAQVTADVDFSRIERAEETYRPNNTEADRASIRSQQTHESMSIGS 314 Query: 299 ----------TSQPESAVTVEQNMPHVSDRKVPLPRSLENTD---------KKEEQSNYE 339 T++P E TD KKE NYE Sbjct: 315 KFDGGIPGALTNRPPEPAIAPIEAGGKKPAGDKAEGDEEETDSTPPLPTDKKKESTINYE 374 Query: 340 INTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN 399 ++ T ++RLS AVVVN + + G + + EIN +V A G N Sbjct: 375 VDKTVQHTQQSTGNIKRLSAAVVVNYRKKVDESGAITYEPLSAEEIKEINNLVREAMGYN 434 Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA 459 RRGD++T+T+ F + V + L+ + L L Sbjct: 435 ERRGDSLTVTNGLFT-GETETVLEVPFWKDPDVIMLAKDFAKQLLIIGVVLFFLLKILRP 493 Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519 L ++ + +A+ D A+ + + +F Sbjct: 494 F--LKSLAPPPPLPALTDNTTQVAADGTALEQLPGQTDGTAMQAIQKSMFDE-------- 543 Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 + R + A +++ W Sbjct: 544 -------NLKRAKQLAMDEPAIVANVVKDWI 567 >gi|293395603|ref|ZP_06639886.1| flagellar M-ring protein [Serratia odorifera DSM 4582] gi|291421922|gb|EFE95168.1| flagellar M-ring protein [Serratia odorifera DSM 4582] Length = 573 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 129/555 (23%), Positives = 238/555 (42%), Gaps = 64/555 (11%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 + SP Y LY L D I L++ NI +R ++NG+++ +P+ V + R+ LA Sbjct: 44 LLLWAKSPDYRVLYSNLNDRDGGAIVTQLTQMNIPYRFAENGAALMIPAEKVHETRLRLA 103 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 QGLP + G+EL D+ FG++ F ++I RALEGE++RTI+S+ + ARVH+ + Sbjct: 104 QQGLPKGGA-VGFELLDQE-KFGISQFSEQINYQRALEGELSRTIESLGPVQNARVHLAL 161 Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 P F + P+ASV + AI ++VA++V L G+VTV+D G+L Sbjct: 162 PKPSLFVREQKSPSASVTLNLQPGRALDDGQINAIVYMVASSVAGLPPGNVTVVDQAGRL 221 Query: 217 LTANEM-ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LT ++ R++ L +++ + I LA +G N R+ V A+++ ++ + Sbjct: 222 LTQSDGSGRDLNASQLKYTSEVENRYQRRIEAILAPIVGSANVRAQVTAQIDFSIREQTD 281 Query: 276 IVYDPDSKVERSIRLSKDAQRSE--------------TSQPESAVTVEQNMPHV------ 315 Y P+ E++ S+ +S+ ++QP +A T P Sbjct: 282 EQYQPNPTPEKAAIRSRQLSQSDQLGGQPVGGVPGALSNQPSAAPTAPIETPAADATANT 341 Query: 316 ----------------SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + +++E +NYE++ T H + ++RLS+ Sbjct: 342 NTTANNAPPAARQTSNTATGNGNGNGQPQNSRRDETTNYEVDRTIRHTQHKSGAVQRLSV 401 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AVV+N ++ G+ L +I +V A G + RGDT+ + + F E ++ Sbjct: 402 AVVLN-TLGSDKDGKPL--PMSKQQLTQIESLVREAMGYSGTRGDTLNVVNSPFTETEM- 457 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 ++ F S +++NA +L+ L+ L + Sbjct: 458 --TAGELPFWQTQS-FIDSLLNAGRYLLILLVAWLLWRKLV-------------RPQLQQ 501 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 ++ + D + Q R+++ V Q R+ + + + Sbjct: 502 RQAQQQAAIAAASAPAARPADAGKPSNDELVQHKRSQQRVSAEVQSQ---RIRDLADKDP 558 Query: 540 ERFAKILRKWARSEI 554 A ++R+W +EI Sbjct: 559 RVVALVIRQWMSNEI 573 >gi|270262379|ref|ZP_06190651.1| flagellar M-ring protein FliF [Serratia odorifera 4Rx13] gi|270044255|gb|EFA17347.1| flagellar M-ring protein FliF [Serratia odorifera 4Rx13] Length = 567 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 132/549 (24%), Positives = 244/549 (44%), Gaps = 58/549 (10%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 + SP Y LY L D I L++ NI +R ++NG+++ +P+ V + R+ LA Sbjct: 44 LLLWAKSPDYRVLYSNLNDRDGGAIVTQLTQMNIPYRFAENGAALMIPADKVHETRLRLA 103 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 QGLP + G+EL D+ FG++ F ++I RALEGE++RTI+S+ + ARVH+ + Sbjct: 104 QQGLPKGGA-VGFELLDQE-KFGISQFSEQINYQRALEGELSRTIESLGPVQNARVHLAL 161 Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 P F + P+ASV + AI ++V+++V L G+VTV+D G+L Sbjct: 162 PKPSLFVREQKSPSASVTLTLQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQAGRL 221 Query: 217 LTANEM-ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LT ++ R++ L +++ + I LA +G N + V A+++ T++ + Sbjct: 222 LTQSDGAGRDLNAAQLKYANEVENRYQRRIEAILAPMVGNANVHAQVTAQIDFATREQTD 281 Query: 276 IVYDPDSKVERSIRLSKDAQRSE--------------TSQPESAVTVEQNMP-------- 313 Y P+ ++ S+ +SE ++QP + T Sbjct: 282 EEYQPNQLPNQAAVRSQQMSQSEQLGGPQVGGVPGALSNQPSAPATAPIETAKTNAAAGN 341 Query: 314 --------HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365 + R S +++E +NYE++ T ++RLS+AVVVN Sbjct: 342 NANGAKPNAAATRSTAANGSGPQNTRRDETTNYEVDRTIRHTQQKAGTVQRLSVAVVVNY 401 Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425 R + G+ LA+I +V + G +S RGDT+ + + F + ++ Sbjct: 402 -RGVDKDGKPL--PMSKEQLAQIESLVRESMGFSSSRGDTLNVVNTPFTDTEVTGGELPF 458 Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485 + + R F A +L+ L L +R ++ + + + Sbjct: 459 WQTQNFIDRLFD----AGRYLLVLLAAWLLWRKLVRP----------QLQNRQAVQQAAL 504 Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545 ++A P DN + + + + R Q R+++ V Q R+ + + + A + Sbjct: 505 AAANAPMAKPADN---NKPSNEELAQHRKSQQRVSAEVQSQ---RIRDLADKDPRVVALV 558 Query: 546 LRKWARSEI 554 +R+W +E+ Sbjct: 559 IRQWMSNEL 567 >gi|242238981|ref|YP_002987162.1| flagellar MS-ring protein [Dickeya dadantii Ech703] gi|242131038|gb|ACS85340.1| flagellar M-ring protein FliF [Dickeya dadantii Ech703] Length = 569 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 119/549 (21%), Positives = 228/549 (41%), Gaps = 63/549 (11%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + SP Y LY L D + L++ N+ +R +DNG +I +PS + R+ LA G Sbjct: 48 WAKSPDYRVLYSNLNDRDGGEVVTQLTQMNVPYRFADNGGAILIPSDKIYDTRLRLAQLG 107 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP + G+EL D+ FG++ F ++I RALEGE++RTI+++ + +ARVH+ +P Sbjct: 108 LPKGGA-VGFELLDQE-KFGISQFSEQINYQRALEGELSRTIETLGPVHSARVHLAIPKP 165 Query: 162 GSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV + AI ++V+++V L +VTV+D G+LL+ Sbjct: 166 SLFVREQKSPSASVTLNLQPGRALDEGQINAIVYMVSSSVSGLPPENVTVVDQNGRLLSQ 225 Query: 220 NE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 + R++ L ++ + I L +G+ N + V A+++ ++ + Y Sbjct: 226 TDAAGRDLNAAQLKYATEVEGRYQRRIEAILTPIVGMGNVHAQVTAQIDFSNREQTDEQY 285 Query: 279 DPDSKVERSI--------------RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPR 324 P+ ++ R + ++QP + T P + + Sbjct: 286 QPNQTPNQAAVRSQQSSQSEQLGGRNIGGVPGALSNQPSATPTAPVTTPGNQTNQNNASQ 345 Query: 325 S-------------------LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365 + + +++ NYE++ T ++RLS+AVVVN Sbjct: 346 TNAANNASAGAQAGTSASGLQSSNTRRDSTINYEVDRTIRHTKQSAGNVQRLSVAVVVNY 405 Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425 +E + + +I + G +S RGDT+ + + F E G+ + Sbjct: 406 ALNSEGKAA----ALSEEQVKQIESLTRETMGFSSDRGDTLNVVNAPFNE---VTDGSGE 458 Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485 + F + V + +L+ L+ L +R ++ + G S Sbjct: 459 LPFWQKQA-FLDLVTSIGKWLLVLLVAWILWRKTVRPQMQKRAQQQALMEGLSAAK---- 513 Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545 ++I + S ++ R Q R+++ Q R+ + E A + Sbjct: 514 ---------QEEDIVVQLSREEQEQQ-RKSQQRVHAENQSQ---RIRDLAESEPRVCALV 560 Query: 546 LRKWARSEI 554 +R+W +E+ Sbjct: 561 IRQWMSTEL 569 >gi|74317618|ref|YP_315358.1| flagellar MS-ring protein [Thiobacillus denitrificans ATCC 25259] gi|74057113|gb|AAZ97553.1| flagellar M-ring protein FliF [Thiobacillus denitrificans ATCC 25259] Length = 548 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 133/571 (23%), Positives = 236/571 (41%), Gaps = 50/571 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + +++F + T+ GR +L+L V +M A + P Y L+ D Sbjct: 7 MVVPGNVMEF--TRTAGGRKILLMLGVAASVAVM--AAVWMWGQQPEYRVLFSNFSDRDG 62 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L + N+ ++ ++ G ++ VP+ V AR+ LA+QGLP N G+EL + Sbjct: 63 GAIVAELEKMNVPYKYAEGGGAVLVPADRVHDARLKLASQGLPKGG-NVGFELME-NQRL 120 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 G + F++++ RA+EGE+AR+I+S+S + AARVH+ +P F +PTASV++ Sbjct: 121 GASQFVEQVNFQRAMEGELARSIESVSAVQAARVHLALPKDSIFVSEQKQPTASVLLNLH 180 Query: 181 NPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME---RNILGKSLSIVQ 235 + AI HLVA++VP L +VTV+D G LL+ + + VQ Sbjct: 181 PGRALDPQQVSAIVHLVASSVPELATKNVTVVDQNGNLLSDAGKAPRVNGMDPSQIKYVQ 240 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK----VERSIRLS 291 +Q ++ I + +G N R+ A+++ + Y P+ RS + S Sbjct: 241 ELQQDVVQRIESIITPIVGPGNVRAEATADVDFSRSEQAVESYKPNQTPDAMAIRSQQTS 300 Query: 292 KDAQRSET---------SQPESAVTVEQNMPHVSDRKVPLPRSLEN-TDKKEEQSNYEIN 341 + S +QP + T +P + + + +K+ NYE++ Sbjct: 301 ESLNGSANPAGVPGALINQPPAPATAPITVPGQATPAPAAAAAQPATSTRKDATVNYEVD 360 Query: 342 TKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR 401 L+RLS+ VVVN + + G+ A + ++ +I +V A G N Sbjct: 361 KTIQYVQQAGGGLKRLSVGVVVNYKKTVDKAGKVAMKPLSEAEKTQITNLVKEAMGYNQA 420 Query: 402 RGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461 RGDT+ + + F Q + + +F N +L+ + + L L + Sbjct: 421 RGDTVNVVNSPFASAQEEDLPQPPFWKQPEYAEYFDIARNVGKYLLMGIALLLLYLKVAK 480 Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521 L ++ P L ++ AL RN Q ++ Sbjct: 481 PLLKKMSEQQALAA--------PNHPLHLEQLATDERAALPG--------QRNYQENLS- 523 Query: 522 YVSKQSDLRLLHMIEINEERFAKILRKWARS 552 R + + A I++ W + Sbjct: 524 --------RAQRLANEDPRVVANIVKTWVAN 546 >gi|197120199|ref|YP_002140626.1| flagellar M-ring mounting plate protein FliF [Geobacter bemidjiensis Bem] gi|197089559|gb|ACH40830.1| flagellar M-ring mounting plate protein FliF [Geobacter bemidjiensis Bem] Length = 523 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 135/557 (24%), Positives = 244/557 (43%), Gaps = 47/557 (8%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + + L + + +L + L++ V L ++ F A N Y L+ L D Sbjct: 1 MPEGLKKLLEPFLALSTAKRLVVGGVALASLLGFAALIAVANKTDYRPLFANLTQEDAGE 60 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L E + ++IS +G +I VPS V R+ LA+ GLP G+E+FD+ N FG+ Sbjct: 61 IVKKLKEQKVPYQISPDGKAILVPSDNVYDLRLSLASDGLPQGGG-VGFEIFDRKN-FGM 118 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T F+Q++ RAL+GE+ RTI I+G+ +ARVH+ +P+ F+ TASV+++ + Sbjct: 119 TEFVQKLNYQRALQGELGRTIAQIAGVESARVHLALPEKALFKDQEKPATASVVLKMKSN 178 Query: 183 SVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA---NEMERNILGKSLSIVQAI 237 + + I HLVA+++ +D VTVLD+ GK+L++ N+ + G +A Sbjct: 179 RQLREGEVQGIVHLVASSIEGMDPEQVTVLDTRGKVLSSHSPNDPTSKVAGARQDTQRAF 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + E + L +G + V A + + E YDP+S RS + S++ + Sbjct: 239 EKTEEEKLQSLLDRVVGSGKSVARVSASFDFKQVEKYEERYDPESAAVRSEQRSEE-KGG 297 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 +S V+ NM + + K +E NYE++ + L ++ Sbjct: 298 GSSTASGVPGVQSNM---GRAQGAAGSTTGGGSKTDETLNYEVSRSTARIIEPVGSLSKV 354 Query: 358 SIAVVVNKGRLTEVLGRSA----DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 S+A++V+ + Q + + +I +V +A G N+ RGD +T+ ++ F Sbjct: 355 SVAILVDGKYELSPGAKPGATPKYQPRSPDEMQKIESLVKSAVGFNAERGDQVTVANIPF 414 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 E + G Q S+ D + T+I + + L + F + L ++ I+ A Sbjct: 415 QETG--DQGGEQPSWYD--APIVQTLIKNGLIGLAFLALLFYVIRPLMKMLKIEKAAH-- 468 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 PI V M ++ + + L L+ Sbjct: 469 -------HFLPIQDDVEQQQMLEM-------------------QKVEHEKMRVTQLELVE 502 Query: 534 MIEINEERFAKILRKWA 550 ++ + + A+IL+ W Sbjct: 503 KVKQDPYQAAQILQNWL 519 >gi|46201261|ref|ZP_00055409.2| COG1766: Flagellar biosynthesis/type III secretory pathway lipoprotein [Magnetospirillum magnetotacticum MS-1] Length = 560 Score = 405 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 143/556 (25%), Positives = 256/556 (46%), Gaps = 9/556 (1%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 D + F + LG R+ +A V + + F+ V +P + LY L++ D +I Sbjct: 6 DDVNAFLQMLRGLGPMRLAAIAGVGVSILGFFIYLMSRVAAPQMELLYGDLDLGDSKQII 65 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L+ I + + +G+ + VP R+ +A Q LP+ +GYELFDK ++ G TS Sbjct: 66 EKLTADKIPYELRKDGTEVWVPKDRKLDLRVRMAEQALPAGGRMAGYELFDKQDALGSTS 125 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 F Q IT VRALEGE+++TI+SI + AARVH+V+P +F + P+ASV+I+ Sbjct: 126 FQQNITMVRALEGELSKTIRSIDKVKAARVHLVLPKREAFSRDTQEPSASVIIKMNGSQR 185 Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL--SIVQAIQHE 240 AI+HL+AAAVP + ++++D G LL + + + Sbjct: 186 LDKGQVSAIQHLIAAAVPKMKPSRISIVDDKGTLLAKGFENSKEYQAQTAEDMKVKTEAK 245 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 + I L LG R+ V ++++ E +DP++KV RS + ++S+ + Sbjct: 246 LVKTIEDLLERSLGPGRVRAEVTVDMDLSQATTTEETFDPETKVVRSQVTVNEGEQSQDA 305 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 +P + VTV+QN+P + R+ +K +E NYEI+ K+ +T + ++ ++S A Sbjct: 306 EP-TPVTVQQNLPDPNASSGGNIRTSTKINKNQETVNYEISRKTKSTVREMGEIRKVSAA 364 Query: 361 VVVNKGRLTEVLGR-SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 V+V+ R G+ ++ + + L++I +V +A G R D + + SM F + + Sbjct: 365 VIVDGVREQSADGKQTSYRDRTAEELSQIEALVKSAIGYTKDRDDQVKVASMPFYKGEEL 424 Query: 420 NSGTVQVSFMDILSRHFATVI--NALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 F+ + R F I N + +V L + + + R + G G + Sbjct: 425 LQAEEPGEFIFGMRRDFVEKIASNLGLSVVAILFLLLVLRPLISRAIESMQGQVGPDGRR 484 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 + + +T L + I + ++ V S ++ ++E Sbjct: 485 LLTTDGGAMPQLTGPSGAAMPAPLGGEEEVIADELID-IDKVEGRVKASSIRKIGEIVEK 543 Query: 538 NEERFAKILRKWARSE 553 + E I+R W E Sbjct: 544 HPEEALSIIRNWLYQE 559 >gi|302037604|ref|YP_003797926.1| flagellar M-ring protein FliF [Candidatus Nitrospira defluvii] gi|300605668|emb|CBK42001.1| Flagellar M-ring protein FliF [Candidatus Nitrospira defluvii] Length = 518 Score = 405 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 124/553 (22%), Positives = 227/553 (41%), Gaps = 49/553 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 F + I+ + I +A + P L+ L V D + I L +A Sbjct: 2 FSKFNQFTINQRFIILLALAGSIAGLVAVTLWTQQPDMQVLFANLAVDDASGIIDKLKDA 61 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 + + ++ G+++ VPS+ V R+ LA QGLP GYE+FD+ G++ F+Q++ Sbjct: 62 KVPYETANGGTTVLVPSAQVHDLRLELAGQGLP-HGGGVGYEIFDRTT-MGMSDFVQKLN 119 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI--RAINPSVYKSA 188 RAL+GE+ARTI + + ARVH+ +P+ F R ASV++ RA Sbjct: 120 YRRALQGELARTITQMPEVERARVHLAIPERRLFATEQDRARASVVVSLRASQTLSKAQI 179 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNIN 246 + + HLV+++V L DVTV+D G LL+ +++ + G + + ++ +IE I Sbjct: 180 QGVVHLVSSSVEGLQSRDVTVVDGHGNLLSNTSSDESAGLSGTQMEYQRTLEKDIETRIQ 239 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306 L +GV+ V + L+ + E YDP+ +V RS + ++ Sbjct: 240 TMLERIVGVNKAVVRVSSVLDFRKIETTEERYDPNGQVVRSEQRGQEKSSGVNGTSGGVP 299 Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 VE N+P ++ + S N K E NYEI+ +++LS+AV+V+ Sbjct: 300 GVESNVPGGTEAE-GGQTSSNNNQTKNETVNYEISRTVSRIVEPTGTIKKLSVAVLVDGT 358 Query: 367 RLTEV-------LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 + + + I +IV A G ++ R D + + S+ F Sbjct: 359 YEGGGKAGEAGADQPKKYVPRSEEEMKRIEEIVKKAMGYSTERQDQVEVVSIQFGLGAEE 418 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 +G V+ + S+ + + V + L+ F+ + L + G ++ Sbjct: 419 PTGGVEAA--PDASKAWMPYVRYAVGGLLFFLIFFMVVRPLMVMLVQSAPAAGGGETPAL 476 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 + A +G P ++L M + N Sbjct: 477 PASVGQVEAAISGKQPG---------------------------------QILDMAKNNP 503 Query: 540 ERFAKILRKWARS 552 A ++++W ++ Sbjct: 504 ANTAVVVKQWLKN 516 >gi|290475703|ref|YP_003468592.1| flagellar basal-body MS(membrane and supramembrane)-ring and collar protein [Xenorhabdus bovienii SS-2004] gi|289175025|emb|CBJ81828.1| flagellar biosynthesis; basal-body MS(membrane and supramembrane)-ring and collar protein [Xenorhabdus bovienii SS-2004] Length = 569 Score = 405 bits (1041), Expect = e-110, Method: Composition-based stats. Identities = 127/582 (21%), Positives = 234/582 (40%), Gaps = 56/582 (9%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 +Q F + + + L I + +A ++ SP Y LY L D I Sbjct: 10 NQNKGFSAIISRIKADPKVPLLVAGSAAIAIVVALFLWMRSPDYRVLYSNLSDKDGGEIV 69 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L++ NI +R ++N S++ +P+ V +AR+ LA QGLP + GYEL DK FG++ Sbjct: 70 TQLTQMNIPYRFAENSSALMIPADKVHEARLKLAQQGLPKGGA-VGYELLDKE-KFGISQ 127 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 F +++ RA EGE++RTI+S+ + +ARV + +P F + PTASV +R + Sbjct: 128 FSEQVNYNRAKEGELSRTIESLDPVESARVILSIPKPSLFVREQKSPTASVTVRLLQGRT 187 Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-NILGKSLSIVQAIQHEI 241 AI HLV++ V L +V ++D +G+LLT + ++ L +Q ++ Sbjct: 188 LDEGQVNAIAHLVSSGVAGLPPSNVKIVDQSGRLLTQADANGLDLNTTQLKYIQEVEKRF 247 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS-------------- 287 + I L +G N + V A+L+ ++ Y P+ + Sbjct: 248 QHRIETILTPVVGRGNVHAQVTAQLDFSRREQTAEEYKPNQPPNEAAVLSKQSSSSEQSG 307 Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN----------------TDK 331 L + ++QP +A + P+ + +S +N ++ Sbjct: 308 GSLVGGVPGALSNQPSAAPSAPIEKPNPDTKGKGDEKSDQNRNSTYNNYERLVNNSRNNR 367 Query: 332 KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKI 391 +E NY++ T +ERLS+AVV+N G + L++I + Sbjct: 368 HDELINYQVGKTISHTQLQVGAVERLSVAVVINYATTQGENGPET-KALTPEQLSQIEAL 426 Query: 392 VSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLL 451 A G +++RGD++ + + F + +L + Sbjct: 427 TREAMGFSTKRGDSLNVVNTPFNDTAEVIEPLPFWQHPVLLEKTLE-------------- 472 Query: 452 VTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSH 511 LG L L +K V + ++ ++ D Sbjct: 473 ---LGRWLLLALVAWLLWRKMIVPQIAKKRAAEKAALNAQKNQQKQQAPESNAELDEKMR 529 Query: 512 SRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + + R+N+ + Q R+ + E + A ++R+W +E Sbjct: 530 RKLARQRVNAEIQSQ---RIRELAEKDPRVVALVIRQWMSNE 568 >gi|90021833|ref|YP_527660.1| flagellar MS-ring protein [Saccharophagus degradans 2-40] gi|89951433|gb|ABD81448.1| flagellar M-ring protein FliF [Saccharophagus degradans 2-40] Length = 556 Score = 405 bits (1041), Expect = e-110, Method: Composition-based stats. Identities = 124/559 (22%), Positives = 232/559 (41%), Gaps = 28/559 (5%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 +L R L + + + A + Y LY L+ D + + L Sbjct: 12 DLIDGFNNLNIIRQAGLMVGLAASVAIGFAVVLWSQGEDYKPLYGSLDRLDSSEVGAILD 71 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 I ++I + ++ V V +AR+ LA G+ +++GYEL D+ G + FM+ Sbjct: 72 FNEIPYKIDGSTGALLVAVDEVHRARLVLAENGI-QGDNSTGYELLDQEQPLGTSQFMEA 130 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI--NPSVYK 186 R +EGE+ARTI SI+ + ARVH+ +P F G +P+ASV + P K Sbjct: 131 TRYKRGIEGELARTIASINSVRGARVHLAIPKRSVFVGDGRKPSASVFLDLYPGRPIKPK 190 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAIQHEIEM 243 + I +LVA+++P L + +VTV+D G LLT A + + I G+ L Q ++ + M Sbjct: 191 QIQGIANLVASSIPELQVENVTVVDQKGNLLTTGIAEDKDLLIAGQHLEYTQKVEDGMIM 250 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 + + L+ LG NF++ V A+++ + E V++PD RS + ++ QR + P Sbjct: 251 RVRRLLSPILGDQNFKTEVAADIDFTEIEQAEEVFNPDLPAVRSEQTVEE-QRIGSGAPG 309 Query: 304 SAVTVEQNMPHVSDRKV-------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 N P + + + + NYE++ T + +L R Sbjct: 310 GIPGALTNQPPADGQAPEQAGQGGEGAGGQPSNTRSQAVRNYELDRTVSYTKREKGRLRR 369 Query: 357 LSIAVVVNKGR-LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL- 414 L++AVV++ + + G L +V A G ++ RGD++ I + FL Sbjct: 370 LTVAVVIDDKKTINPETGAVERTQWTQQELERFAILVRDAVGYSAVRGDSVNILNEAFLP 429 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 E + + + + + + AL+ + L+ L L+ L + + Sbjct: 430 EPAIEVLDDLPFWQNESILKLIKPIAGALIIVA---LLVGLVRPVLKSLAVAGVKTREQD 486 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 K + + L + S + ++N+ + + Sbjct: 487 EAKEMAALQAAGMDGFDSLSDETVTLTGGDALALPSPEEGYEQQLNA---------VKGL 537 Query: 535 IEINEERFAKILRKWARSE 553 + + R A+++++W E Sbjct: 538 VAEDAGRVAQVIKRWINEE 556 >gi|27355280|dbj|BAC52264.1| fliF [Bradyrhizobium japonicum USDA 110] Length = 519 Score = 405 bits (1041), Expect = e-110, Method: Composition-based stats. Identities = 132/532 (24%), Positives = 231/532 (43%), Gaps = 20/532 (3%) Query: 25 LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSIS 84 + +V + F V +P L+ L V D + I L I F + + G+ I Sbjct: 1 MIAVTAALVGFFAFVIMRVTTPQMTTLFTDLSVEDSSSIIKDLERQAIQFELRNEGTIIM 60 Query: 85 VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144 VP V + R+ LA GYE+FDK ++ G TSF+Q I +RALEGE+ARTI+ Sbjct: 61 VPKDKVTRLRMKLAEG-GLPKGGGVGYEVFDKSDALGTTSFVQNINHLRALEGELARTIR 119 Query: 145 SISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDM 204 +I I AARVH+V+P+ F + P+AS+++R + AIRHLVA+AV L Sbjct: 120 AIDRIQAARVHLVLPERPLFSREAPEPSASIVVRVRGALEAQQIRAIRHLVASAVNGLKP 179 Query: 205 GDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVA 264 V+++D G+LL + + + +++ +G R + A Sbjct: 180 QRVSIVDEAGQLLADGAATDPEQALGDERRTTFEKRMRKQVEDIVSSVVGSGRARVQLSA 239 Query: 265 ELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPR 324 + + + +DP+ +V RS + +++ S T+ VTV +P +++ Sbjct: 240 DFDFNKITQTSDKFDPEGRVLRSTQTREES--SMTADNNGQVTVNNELPG--NQQNNGVA 295 Query: 325 SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY 384 + + + K EE +NYEI+ + + ++ R+S+AV+V+ G A Q + Sbjct: 296 AKDQSKKTEETNNYEISRTTKTEVTEAGRVNRISVAVLVDGIYSKNDKGELAYQDRTKEQ 355 Query: 385 LAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDIL---SRHFATVIN 441 L I +V +A G + +RGD + + ++ F + F+ +L + Sbjct: 356 LDRIATLVRSAIGFDQKRGDQVEVVNLRFADAPSTAPIAEPSGFLGMLQFTKDDVMYFVE 415 Query: 442 ALVFLVGTLLVTFLGLHAL-RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIA 500 V ++ L+V F+ + L +R+ D+ G S + ++ + A Sbjct: 416 LGVMMLLGLVVLFMVIRPLVKRILASDEVAAAISGVLSGPAASDEAAPAAGQALLPGGAA 475 Query: 501 LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 S + I V QS R+ + E N I+R+W Sbjct: 476 -----------SAIDVATIQGQVHAQSVHRVGELAERNPNETVAIIRQWLTE 516 >gi|170769442|ref|ZP_02903895.1| flagellar M-ring protein FliF [Escherichia albertii TW07627] gi|170121766|gb|EDS90697.1| flagellar M-ring protein FliF [Escherichia albertii TW07627] Length = 552 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 130/537 (24%), Positives = 242/537 (45%), Gaps = 47/537 (8%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R+S+ +I VP+ V + R+ LA Q Sbjct: 41 LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRVSETSGAIEVPADKVHELRLRLAQQ 100 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE++RTI++I + ARVH+ +P Sbjct: 101 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLALPK 158 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + + AI HLV++AV L G++T++D G LLT Sbjct: 159 PSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAGLPTGNITLVDQGGHLLT 218 Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 +N ER++ L ++ I+ I L +G N + V A+L+ +++ E Sbjct: 219 QSNSSERDLNDIQLKYANDVESRIQQRIEAILTPIVGNGNIHAQVTAQLDFASKEQTEEQ 278 Query: 278 YDPDSKVERSIRLSK---DAQRSETSQPESAVTVEQNMPHVSDRKV-------------- 320 Y P+ ++ S+ ++++S + P N P ++ Sbjct: 279 YRPNGNESQTALRSRQLNESEQSGSGYPGGVPGALSNQPAPANNAPISTPPTTQNNRQQQ 338 Query: 321 --PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ 378 S + ++ E SNYE++ T + ++RLS+AVVVN L + Sbjct: 339 TSTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNDKTLPDGKPL---- 394 Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFAT 438 + +I + A G + +RGD++ + + F + N + ++ F + Sbjct: 395 PLSTEQMKQIEDLTREAMGFSEKRGDSLNVVNSPFNSS---NESSGELPFWQQQA-FIDQ 450 Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498 +++A +L+ L+ L A+R A+ + + + + AV L ++ Sbjct: 451 LLSAGRWLLVLLVAWLLWRKAVRPQLTRR-AEAVKTVQQQAQARQEVEDAVEVRLSKDEQ 509 Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + +NQ R+++ V Q R+ M + + A ++R+W ++ E Sbjct: 510 LQQRRANQ-----------RMSAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|254502238|ref|ZP_05114389.1| flagellar M-ring protein FliF [Labrenzia alexandrii DFL-11] gi|222438309|gb|EEE44988.1| flagellar M-ring protein FliF [Labrenzia alexandrii DFL-11] Length = 538 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 142/555 (25%), Positives = 260/555 (46%), Gaps = 20/555 (3%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++ L++F K +LG RI + +V + + +F F V +P LY +L + D I Sbjct: 1 MNGLIEFIK---TLGPARIAAMGAVAAILVGVFAFIIFRVTAPQMTTLYNELTLEDSAAI 57 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L + F+++ G+SI VP V + R+ LAA+GLP+ S GYE+FD+ ++ G T Sbjct: 58 VSQLESQGVQFKLAREGASIMVPQEQVARLRMQLAAEGLPTGGS-IGYEIFDRSDTLGAT 116 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 SF+Q I +RA+EGE++RTI S+ I +ARVH+V+P+ F++ P+AS+++ Sbjct: 117 SFVQNINHLRAMEGELSRTISSLDRIRSARVHLVIPERQLFQRDRRPPSASIVLNVRGGL 176 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAIQHE 240 A++HLVA AV LD V+++D +G+LL + + E + + AI+ Sbjct: 177 GPGEIRAVQHLVATAVDGLDPDKVSIVDESGRLLASGASSDDEGMVSARLQERSTAIESR 236 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 + + + L + +G R V A+++ + +DP+ +V RS + ++A S + Sbjct: 237 LRNQVEEILNSVVGPGRARVRVNADIDFNRLTETTETFDPEGQVVRSTQSKEEATSS--T 294 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 + + VTV +P+ + + + EE NYEI+ + + ++ RLS+A Sbjct: 295 RQDGQVTVGNELPNADANQNNDAEEQDTSSLTEEIVNYEISRSTRTEVVEAGRITRLSVA 354 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 V+V+ T+ G S + L I +V +A G + RGD + + ++ F + Sbjct: 355 VLVDGTYQTDEDGNSIYTPRAQEALDRIAVLVRSAVGFDEARGDVVEVINLQFALPPELD 414 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 F S ++FL+ LL+ F+ LRR+ ++ + E+ Sbjct: 415 IAEPDGLFDFTRSDIMRFAELGVLFLIAILLLLFVVRPLLRRIVTPEERQPQEL------ 468 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 L+ + + + +D F Q++ + S ++ MI + Sbjct: 469 -----VIGPDGTLVADSEVPKEEEEEDEFVIEWLEQAKQEGALQASSIAKVGEMISDHPT 523 Query: 541 RFAKILRKWARSEIE 555 I+R W + Sbjct: 524 EAVNIVRGWLDEQAA 538 >gi|77165822|ref|YP_344347.1| flagellar FliF M-ring protein [Nitrosococcus oceani ATCC 19707] gi|254434642|ref|ZP_05048150.1| flagellar M-ring protein FliF [Nitrosococcus oceani AFC27] gi|76884136|gb|ABA58817.1| Flagellar FliF M-ring protein [Nitrosococcus oceani ATCC 19707] gi|207090975|gb|EDZ68246.1| flagellar M-ring protein FliF [Nitrosococcus oceani AFC27] Length = 567 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 137/566 (24%), Positives = 259/566 (45%), Gaps = 39/566 (6%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 +L + L + + L I + L + + +P Y +Y + + I Sbjct: 24 RLAALQANIGRLSLQKQVGLLLAIAASVALVVGIFMWSWAPTYQVMYGAVTGKEKGEIVA 83 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 AL +ANI++R+++N +I VP+S V + R+ LA +GLP S+++G+EL ++ FG + F Sbjct: 84 ALQKANIEYRLAENTGAIMVPASKVHEVRLQLAMEGLPR-SADTGFELLEQNPGFGASEF 142 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 +++ RALEGE+ARTI +++ + ARVH+ +P F + P+ASV++ Sbjct: 143 LEKARYQRALEGELARTIGALNNVRNARVHLALPKQSVFIRNRRAPSASVVLDLYAGRTL 202 Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEI 241 AI HLVA+++PNL+ VT++D G LLT + +++ + ++ + Sbjct: 203 DPGQVAAITHLVASSIPNLESSGVTLVDQRGNLLTRQDRSQSLGMTEGQFEHTRRLEEKY 262 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 I LA +G + R+ VVAE++ + + Y+P S RS ++S++ R+ + Sbjct: 263 ISRIQHILAPMIGSNKVRAQVVAEVDFTVTEQTQEYYNPGSAALRSEQMSEEE-RTGSRL 321 Query: 302 PESAVTVEQNMPHVSDRKV----------PLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 P+ N P + + T + NYE++ + Sbjct: 322 PQGIPGALSNQPPADAQAPETVPEANGDEAQIEPVPTTRSQRATRNYELDRTISHSRLSP 381 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 + RLS+AV+V++ +T+ G + + LA++ +V A G N+ RGDTI + + Sbjct: 382 GSIRRLSVAVLVDEKAVTDAEGAVSTLPRSPQELAQVTALVKEAVGFNAERGDTINVINA 441 Query: 412 DFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 F+ N+ + + D + V L LL+ + A RRL + Sbjct: 442 PFVPANEEEAFPELSLWQQDWFWQ---AVKQGGGILAILLLLLGVLRPAFRRLTAL---- 494 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS-RINSYVSKQSDL 529 P A++ ++ + D +D S S N + +++ S +++L Sbjct: 495 -------------PEPVALSAIPNKDEEESDDGLQEDQLSLSSNKPTLQLSGPHSLEANL 541 Query: 530 RL-LHMIEINEERFAKILRKWARSEI 554 + M + R A++++ W S++ Sbjct: 542 EIVREMATGDSRRVAQVVKNWLVSDV 567 >gi|261344120|ref|ZP_05971764.1| flagellar M-ring protein FliF [Providencia rustigianii DSM 4541] gi|282567712|gb|EFB73247.1| flagellar M-ring protein FliF [Providencia rustigianii DSM 4541] Length = 564 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 125/532 (23%), Positives = 245/532 (46%), Gaps = 41/532 (7%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + SP Y L L D I L++ N+ ++I+DNGS+I VP+ V + R+ LA G Sbjct: 47 WFRSPDYRVLLSNLSAKDGGDIVGQLTQMNVPYQIADNGSAILVPADKVHELRLKLAQSG 106 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP N+G+EL DK FG++ F ++I RALEGE++RTI+S+S + +ARVH+ +P Sbjct: 107 LPKGG-NTGFELLDKEQ-FGISQFSEQINYQRALEGELSRTIESLSPVQSARVHLAIPKP 164 Query: 162 GSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + PTASV + + V AI H+V+++V L +V ++D TG+LLT Sbjct: 165 TLFVREQKLPTASVTVGLLPGRVLDEGQISAIVHMVSSSVTGLTAANVIIVDQTGRLLTN 224 Query: 220 NE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 N+ +++ + + + ++ ++ I L+ +G N + V A+++ + Y Sbjct: 225 NDNSQQSANSAQIKMTKEMETHLKERIEDILSPLVGRANIHAQVTAQMDFSKVEQTSEEY 284 Query: 279 DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN---------- 328 P+ + + S+ S + V + + P EN Sbjct: 285 KPNQTPDAAAIRSRQNSESMQNSNGGPGGVPGALSNQPVSAPSAPIEAENKDNTGKNNQN 344 Query: 329 ---------TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQG 379 +++E +NYE++ K T ++RLS+AV+VN G + Sbjct: 345 TTTTRNGTLNSQRDETTNYEVDRKISHTQRQIGVVDRLSVAVIVNYQAQEGEKG-VEMKP 403 Query: 380 KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATV 439 + +I+ + A G +++RGD++ IT+ F + + ++ + + + + Sbjct: 404 LPPEMIKQIDALTREAMGYSTQRGDSLNITNSLFTSD----APAIEETSLLNSPQFVSQA 459 Query: 440 INALVFLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498 ++ ++ ++ F+ ++ A++ + ++ I++ TT + + Sbjct: 460 LDYGKIILIAIIAWFMWRFGIKPQWVKYRKAQQAQADAETF-----IATQSTTPFVVEEE 514 Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 I D D + R + R+++ + Q R+ M E + + A ++R+W Sbjct: 515 INED---MDEKTRRRLTRQRVSAEIQSQ---RIREMAEKDPQVVAMVIRQWL 560 >gi|167588531|ref|ZP_02380919.1| flagellar MS-ring protein [Burkholderia ubonensis Bu] Length = 487 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 114/416 (27%), Positives = 196/416 (47%), Gaps = 17/416 (4%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LA Sbjct: 50 LVLWTRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLA 109 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 A GLP S G+EL D FG++ F ++I RALEGE+ RTI+S++ + AARVH+ + Sbjct: 110 ALGLPKGGS-VGFELMD-NQKFGISQFAEQINYQRALEGELQRTIESVNAVKAARVHLAI 167 Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKL 216 P F + P+ASV + V + AI +V++ VP++ +VT++D G L Sbjct: 168 PKPSVFVRDKEAPSASVFVDLYPGRVLDEGQVLAITRMVSSGVPDMPAKNVTIVDQDGNL 227 Query: 217 LTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 LT + L VQ ++ + I+ LA G N RS V A+++ + Sbjct: 228 LTQPASATGLDASQLKYVQQVERNTQKRIDAILAPIFGTGNARSQVSADIDFSRLEQTSE 287 Query: 277 VYDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPH-------VSDRKVPLPRSL 326 Y P+ +++ S+ + A V N P V+ P++ Sbjct: 288 SYGPNGTPQQTAIRSQQTSTATELAQGGASGVPGALSNTPPQPASAPIVAGNGQNGPQAT 347 Query: 327 ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLA 386 +D+K+ +NYE++ ++RLS+AVVVN + + G Q + LA Sbjct: 348 PVSDRKDSTTNYELDKTIRHVEQPMGSVKRLSVAVVVNYQPVADSKGHVTMQPLPPAKLA 407 Query: 387 EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV---QVSFMDILSRHFATV 439 ++ ++V A G +++RGD++ + + F + Q + +D+ + Sbjct: 408 QVEQLVKDAMGYDAKRGDSVNVVNSTFTAAGDPYANLPWYRQPAIIDMAKEAAKWL 463 >gi|322421735|ref|YP_004200958.1| flagellar M-ring protein FliF [Geobacter sp. M18] gi|320128122|gb|ADW15682.1| flagellar M-ring protein FliF [Geobacter sp. M18] Length = 524 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 128/557 (22%), Positives = 239/557 (42%), Gaps = 46/557 (8%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + + L + + +L + L++ V L ++ F A N Y L+ L D Sbjct: 1 MPEGLKKLLEPFLALSAGKRLVVGGVALASLLAFAALITVANKTDYRPLFANLTSEDAGE 60 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L E + ++I+ +G +I VPS V R+ +A+ GLP GYE+FD+ N FG+ Sbjct: 61 IVKKLKEQKVPYQIAADGKAIMVPSDKVYDLRLSMASDGLPQGGG-IGYEIFDRKN-FGM 118 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T F+Q++ RAL+GE++RTI I+G+ +ARVH+ +P+ F+ TASV+++ + Sbjct: 119 TEFVQKLNYQRALQGELSRTISQIAGVESARVHLAIPEKTLFKDAEKPATASVVLKMKSN 178 Query: 183 SVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAI 237 + + + I HLVA+++ +D VTVLDS GK+L+ N + + G + Sbjct: 179 RMLREAEVQGIVHLVASSIEGMDPEQVTVLDSRGKMLSGNTPSDTASKLTGSRQETQRNF 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + E + L +G + V A + + E YDP+S RS + S++ + Sbjct: 239 EKTQEEKLQTLLDRVVGSGKCVARVSAAFDFKQVEKYEERYDPESAAVRSEQRSEE-KGG 297 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 T+ V+ N+ P K +E NYE++ + L ++ Sbjct: 298 VTATASGVPGVQSNL---GRSAPGAPGQTGGGSKTDETLNYEVSRSTARIIEPVGALSKV 354 Query: 358 SIAVVVNKGRLTEVLGRSA----DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 S+AV+V+ + Q + + +I +V +A G ++ RGD +T+ ++ F Sbjct: 355 SVAVLVDGKYDLPAGAKPGATPKYQPRTPDEMQKIEALVKSAVGFSAERGDQVTVANIPF 414 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 E ++G + D + T+I L+ +G L + + L + I+ Sbjct: 415 QETG--DTGGEPPKWYD--APIVQTLIKNLLIGLGFLALIMFVIRPLLKTLKIERPASS- 469 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 + D ++ + + + L+ Sbjct: 470 --------------------------SFLPVQDDAEHAHMIEMQKLAQEKMRMTQIELVE 503 Query: 534 MIEINEERFAKILRKWA 550 ++ + + A+IL+ W Sbjct: 504 KVKQDPYQAAQILQNWL 520 >gi|226941278|ref|YP_002796352.1| FliF1 [Laribacter hongkongensis HLHK9] gi|226716205|gb|ACO75343.1| FliF1 [Laribacter hongkongensis HLHK9] Length = 571 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 123/576 (21%), Positives = 248/576 (43%), Gaps = 44/576 (7%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ + + +L + L+L + + +AA + P Y L+ L + +++ Sbjct: 14 QRVREALERYRALPGNKKLLLFGGMAAVASILVAAYLYTREPAYKVLFSNLPDREGGQVT 73 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 AL++ N+ ++++ +G I VP+ V R+ LA++GLP +S G+EL D FG++ Sbjct: 74 EALTKLNVPYQLA-DGGVIRVPAEQVYSTRLKLASEGLPKASG-IGFELMD-NQKFGISQ 130 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 F +++ RA+EGE+ARTI+++ + +ARVH+ MP F + PTASV++ + Sbjct: 131 FAEQVNYQRAVEGELARTIEALGVVESARVHLAMPKQSVFVREQQLPTASVLLNLRPGFI 190 Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQAIQ 238 IR+LVA+AVP L ++T++D G L++ + + + L V+ I+ Sbjct: 191 LDAGQIAGIRNLVASAVPGLPQKNITIVDQEGNLISRMPDMEDGSAGLSRRQLDYVRQIE 250 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK----VERSIRLSKDA 294 + I L +G N R+ V A ++ + ++P++ RS + S+ Sbjct: 251 TSLTKRIEAILEPIVGSGNARAQVTAAVDFSEVEQTAETFNPNTPPNAGAIRSQQTSESQ 310 Query: 295 QRSE----------TSQPESAVTVEQNMPHVSDRK-VPLPRSLENT-----DKKEEQSNY 338 R E ++QP +A +P + +P P +N KE +NY Sbjct: 311 TREEAPQGGVPGALSNQPPNAAAAPVTLPPGTQAGLMPAPNGQQNQARPVKSSKEATTNY 370 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ L+R++ AVVVN R T G + + + +++K+V A G Sbjct: 371 EVDRTIQHVRQQTGALKRVTAAVVVNFKRTTTADGNAKMTPLSEQEMQQLDKLVREAMGF 430 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 RGD++ + + F + + +Q D S + ++ ++ + L + F + Sbjct: 431 TQARGDSVQVVNASFADTAGSKAA-LQDRLFDYASNNPGEILKWVLGALVVLYLLFGVIR 489 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 + R G + + + + + ++ R S Sbjct: 490 PVVRDIVKPKPVLPPPGSDAAAAEGEGVAGEGGMTLED-----LANLDPKELARREYDSM 544 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + ++ + A+I+++W ++ Sbjct: 545 LEGA---------RQVVRADPRMAAQIIKEWVNNDE 571 >gi|73538922|ref|YP_299289.1| flagellar MS-ring protein [Ralstonia eutropha JMP134] gi|72122259|gb|AAZ64445.1| Flagellar FliF M-ring protein [Ralstonia eutropha JMP134] Length = 568 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 118/555 (21%), Positives = 223/555 (40%), Gaps = 70/555 (12%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y LY L D + +L + N+ ++ ++ G ++ VP+ V + R+ LA+Q Sbjct: 42 LWSRAPDYKVLYSNLSERDGGAVLQSLQQMNVPYKFAEGGGAVMVPAEKVHETRLRLASQ 101 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S + +G EL D FG++ F +++ R LEGE+AR+I+SI+ + +ARVH+ +P Sbjct: 102 GLPKSGT-TGLELMD-NQKFGISQFAEQVNYQRGLEGELARSIESIAAVQSARVHLAIPK 159 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + +PTAS++++ AI HLV+++VP L ++++D G LL+ Sbjct: 160 PTLFVRERQKPTASIVLQLYPGRAIDEGQVAAISHLVSSSVPELTPKAISIVDQHGNLLS 219 Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 + ER + L VQA++ I L +G DN R+ V A+++ + + Y Sbjct: 220 NSGNERMLDATQLKYVQALEQNYLKRIESILTPIVGKDNVRAQVTADVDFSIVEHTDESY 279 Query: 279 DPDS----KVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRK--------------- 319 P+ RS + S+ Q+ T P N P Sbjct: 280 KPNQDPTHAAIRSQQTSESNQQGATP-PGGVPGALSNQPPAPATAPITTAQTPRAGQAPG 338 Query: 320 -------------------VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 + ++++++ NYE++ + RLS+A Sbjct: 339 QAGAPAQPQGAQAGQAQAATSTASTGPSSNRRDSTVNYELDRTVRHVQQAPGGVRRLSVA 398 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 VVVN + + G+ Q + LA+I + G ++ RGD+I + + F + Sbjct: 399 VVVNYRQQADAKGKMVAQPLPPALLAQIENLTKETMGFSADRGDSINVVNSPFTVD-REV 457 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNIDDAKKGEVGGKSI 479 + + + + T L+ + L F LRR + Sbjct: 458 TPELPLWKQPEMIDLAKTGAGYLLLALLALFAWFKIARPILRRYTTPPLPAPTPAAETTA 517 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 PP +N ++ + +S + + + + Sbjct: 518 ELLPPEEP----------------TNPEVLRLAAKYESDLAL---------VRDAAQRDP 552 Query: 540 ERFAKILRKWARSEI 554 A +++ W +++ Sbjct: 553 RLVASVIKNWIGNDL 567 >gi|254522751|ref|ZP_05134806.1| flagellar M-ring protein FliF [Stenotrophomonas sp. SKA14] gi|219720342|gb|EED38867.1| flagellar M-ring protein FliF [Stenotrophomonas sp. SKA14] Length = 547 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 121/553 (21%), Positives = 233/553 (42%), Gaps = 22/553 (3%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ Q+F SL TR L L ++I V + ++ F+ P LY L+ + Sbjct: 13 EKAGQWFDRLQSLQITRRLGLMAMIAVAVAAGLSVFFWSQKPGMVPLYTGLDQKATAEAT 72 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L A I F + I+VP + AR+ LA GL + S G+EL ++ FG++ Sbjct: 73 DLLRAAQIPFALDPATGGITVPEKNLHDARLKLAGSGL-TDSGKLGFELMERDPGFGVSQ 131 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 F++ ALE E++RTI ++ + +RVH+ +P +F + +ASV + Sbjct: 132 FVESARYQHALETELSRTINTLRPVRDSRVHLAIPKPSAFTRQRDVASASVTLELRGGQQ 191 Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHE 240 + +AI H+VAA++P+L VTV+D +G++L+ ++ E + V+ + Sbjct: 192 LERSQVDAIVHMVAASIPDLAPERVTVVDQSGRMLSVSDPNSEAAVNAAQFEQVRRQETS 251 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I + L G V +++ + +Y+ + + RS ++S+++ + T Sbjct: 252 FNQRIRELLEPMTGPGRVNPEVSVDMDFSVTEEARELYNGEPQKLRSEQMSENS--TTTP 309 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 P+ N P ++ + K NYE++ T +++R+S+A Sbjct: 310 GPQGVPGATSNSPPGQQAAPATAQAPTESS-KNATRNYELDRTLQHTRQPAGRIKRVSVA 368 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 V+V+ G+ A Q + L + +V A G N+ RGDT+++ + F+ + Sbjct: 369 VLVDNVPRAGANGKVAPQPLSAAELTRVEALVKQAVGFNAERGDTVSVMNAPFVRDTTPV 428 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 G V +A L+G ++V L LR A + G K Sbjct: 429 EGPA--------WWELPWVHDAGRMLLGAVVVLALLFGVLRP------ALRAITGQKKND 474 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 L+ +D + L + D S + ++ ++ + + Sbjct: 475 EQALEPHTADVQLVDDDGMPLPALGADRASLGGPDALALPVDSYEERLRMAREAVKTDSK 534 Query: 541 RFAKILRKWARSE 553 R A++++ W ++ Sbjct: 535 RVAQVVKGWVAND 547 >gi|300024598|ref|YP_003757209.1| flagellar M-ring protein FliF [Hyphomicrobium denitrificans ATCC 51888] gi|299526419|gb|ADJ24888.1| flagellar M-ring protein FliF [Hyphomicrobium denitrificans ATCC 51888] Length = 561 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 186/559 (33%), Positives = 303/559 (54%), Gaps = 15/559 (2%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 Q + S LGR R++ L + + L +F + ++ LYV L D++ + Sbjct: 5 QFQNLYSSLKGLGRQRLMALGAAGFLVFALISIGSYFASRSSFETLYVGLTPPDISSMGR 64 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L++A I F S +G+ + V +AR LA +GLP S N+GYELFDK+ + GLTSF Sbjct: 65 ELAQAGIPFEASLDGTKLGVAVGQAEQARALLAEKGLP-GSPNAGYELFDKLGALGLTSF 123 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 MQE+TRVRALEGE++RTIQ + GI AARVH+ +PD R PTASV+I+ S Sbjct: 124 MQEVTRVRALEGELSRTIQYLKGIRAARVHLYLPDQNGLRTKKQTPTASVVIKTDVASDA 183 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEIEMN 244 +A AI+HL+AAA+P++ +V V+ + G LL + ++ + L + + I +++ + Sbjct: 184 TAAPAIKHLIAAAIPDMKPDEVQVIGTDGTLLGGSGSPSGDVPVQMLDLERTISTQVQDS 243 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 + +AL+ +LG+DNF + +A LN+D Q E YDP+SKVERS R+ K+AQ S + Sbjct: 244 VRRALSPYLGIDNFEVSAIARLNIDKHQTTETKYDPESKVERSTRVIKEAQSSTDGSGRT 303 Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 V+VEQN+P+ + ++ D+KEE +NYEI++ S +TT + YK+ +S+AVVVN Sbjct: 304 DVSVEQNIPNEAP--TTKEQNKRAQDRKEETTNYEISSHSASTTSEGYKVNNISLAVVVN 361 Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424 K R+ E++G+ A I+ +AEI K+ +A G++++RGD I++ +++F ++ + Sbjct: 362 KKRIAEIIGKDAKTEDIEKQVAEIEKVALSAAGLDTKRGDRISVAAVEFAQSPFGDITAP 421 Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG--EVGGKSILSP 482 + +L T I +L L+ +V F G RL A G + L+ Sbjct: 422 STDWSVMLMGLAGTGIKSLTILLIAAIVVFAGFKPAMRLLLTGSAATAIEGNGAVAALAG 481 Query: 483 PPISSAVTTGL---MPNDNIALDSSNQDIFSHSRNLQS------RINSYVSKQSDLRLLH 533 PPI+ A MP L + F ++ +L Sbjct: 482 PPIADAGGVTAPLDMPEMASPLLEPGANPFDSDFGSSGFAGDGMSFGRSLAFGPVEKLGA 541 Query: 534 MIEINEERFAKILRKWARS 552 +I+ +E++ I++ W ++ Sbjct: 542 IIDRDEDQATAIMKHWVKN 560 >gi|146342729|ref|YP_001207777.1| flagellar MS-ring protein [Bradyrhizobium sp. ORS278] gi|146195535|emb|CAL79562.1| Flagellar basal body M-ring protein [Bradyrhizobium sp. ORS278] Length = 532 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 136/552 (24%), Positives = 238/552 (43%), Gaps = 27/552 (4%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + LL F K LG R+ + +V + F V +P L+ L + D + I Sbjct: 1 MQGLLDFLKG---LGAARLAAMVAVTAALVGFFGFVIMRVTAPQMTTLFTDLSMDDSSSI 57 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L I F I + GS I VP V + R+ LA GYE+FDK ++ G T Sbjct: 58 IKDLERQGIAFEIRNEGSVIMVPKDKVTRLRMKLAEG-GLPKGGGVGYEIFDKSDALGTT 116 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 SF+Q I +RALEGE+ARTI++I + AARVH+V+P+ F + P+AS+++R Sbjct: 117 SFVQNINHLRALEGELARTIRAIDRVQAARVHLVLPERPLFSRETPEPSASIVVRVRGSL 176 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEM 243 AIRHLVA+AV L V+++D G+LL A + + Sbjct: 177 EANQIRAIRHLVASAVNGLKPQRVSIVDEAGQLLADGTQTDIDQQVGDERRNAFEKRMRK 236 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 + +++ +G R + A+ + + YDP+ +V RS + ++ +S TS+ Sbjct: 237 QVEDIVSSVVGSGRARVQLSADFDFNRITQTSDRYDPEGRVLRSSQTREE--QSATSESN 294 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 VTV + + + + + + K EE +NYEI+ + + ++ R+S+AV+V Sbjct: 295 GQVTVNNEL-PGNQQNQQGQQPKDQSKKTEETNNYEISRTTKTEVTEAGRVNRISVAVLV 353 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 + G + + L I +V +A G + +RGD + + ++ F + + + Sbjct: 354 DGAYSKNEKGDLVYKERSKEELDRIAALVRSAIGFDQKRGDQVEVVNLKFADGPVVPQIS 413 Query: 424 VQVSFMDIL---SRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 F+ +L VI V ++ ++V F+ + L + + +I Sbjct: 414 EPTGFLGMLHFTKDDVMYVIELAVMMLLGIVVVFMVVRPLVKKIISTEEIAAANAVPAIT 473 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 + A ++A ++ V QS R+ + + N Sbjct: 474 DETAQAQAHAQQTAQLIDVA-----------------QVQGQVHAQSVHRVGELADRNPG 516 Query: 541 RFAKILRKWARS 552 A I+R+W Sbjct: 517 EAAAIIRQWLAE 528 >gi|312115289|ref|YP_004012885.1| flagellar M-ring protein FliF [Rhodomicrobium vannielii ATCC 17100] gi|311220418|gb|ADP71786.1| flagellar M-ring protein FliF [Rhodomicrobium vannielii ATCC 17100] Length = 547 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 184/553 (33%), Positives = 291/553 (52%), Gaps = 20/553 (3%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 MAI DQ+ S LG R+ L +V + + + ++V+ D LYV L SDV Sbjct: 13 MAIRDQIDALRVSLLGLGARRLAALVAVGVAIVAIVGVGSYYVSRAEKDVLYVGLTASDV 72 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +RI L EA I F + + I V +AR+ LA +GLP++++ +GYELFDK+ S Sbjct: 73 SRIGAVLKEAGIPFDSNSEANKIFVNRGDTARARMILAERGLPNNAT-AGYELFDKLGSL 131 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQ ITRVRALEGEIARTI+++ + +ARVH+VM D GSFR+ TASV+++ Sbjct: 132 GLTSFMQNITRVRALEGEIARTIEAMRAVNSARVHLVMADAGSFRREPQAATASVVVKPA 191 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-GKSLSIVQAIQH 239 + SA AIR +VA+AVP + V+VL + G +L+A + + GK L + + + Sbjct: 192 -GAEPPSAAAIRQIVASAVPGMKPDHVSVLSTDGTILSAGDDGPGVASGKMLDLEKQVSR 250 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 EI NI K L LG+ NF ++V LN+D +QI E +DP+SK ERS R K++ S+ Sbjct: 251 EINDNIRKTLTPVLGLGNFETSVTVRLNLDRKQINETAFDPESKAERSTRTVKESSNSQN 310 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + + ++VEQN+P P +S +++KEE +NYE+++KS+ T + Y++E +++ Sbjct: 311 TNQKWNISVEQNIPTDQQNTKPSDQSKRASERKEETTNYEVSSKSVTTQSEGYRVENIAV 370 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AVV+N+ L + D + + ++VS+A G++S RGD T+ ++DF F Sbjct: 371 AVVLNRKPLLAAADSAKTAP--DEQIRVVERLVSSAAGLDSLRGDKATVVALDFAGGNEF 428 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + ++F D + + + A L+ T+L +GL R+ + K Sbjct: 429 DQA-PSLTFWDHVMEGLGSYVIAAALLISTILFVAVGLRPSLRMILENKPKPAPQIAADK 487 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 + P + + T P++ S + I +E Sbjct: 488 RTTPVLETVAATVETPDNA--------------EGPPLPTPSAKKNSPLKSVEKAIAEDE 533 Query: 540 ERFAKILRKWARS 552 E+ A +L W R Sbjct: 534 EKAAAVLIDWIRE 546 >gi|242278626|ref|YP_002990755.1| flagellar M-ring protein FliF [Desulfovibrio salexigens DSM 2638] gi|242121520|gb|ACS79216.1| flagellar M-ring protein FliF [Desulfovibrio salexigens DSM 2638] Length = 534 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 132/559 (23%), Positives = 241/559 (43%), Gaps = 40/559 (7%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L + F+ T R +++ + ++ F+ F++N Y LY KL D +R+ Sbjct: 9 LGKFQTFWSDRTVSQR---IMIGGLAATVVIAFILMVFWLNQTEYRVLYTKLYAEDASRV 65 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L ++I DNGS+I VP+ V R+ +A +G GYE+FD+V G T Sbjct: 66 VSILQSTKEPYKIQDNGSTILVPADKVYDLRLKIAGEG-ALHGQGIGYEIFDEVQ-IGQT 123 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP- 182 F+Q I RAL+GE+ARTI + ARVH+V+P F + P+ASV+++ + Sbjct: 124 DFIQRINYQRALQGELARTISEFPQVERARVHLVLPAKSLFIEEQVDPSASVVLKLKDGE 183 Query: 183 -SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI----LGKSLSIVQAI 237 K + + +LV +V L VT+ D G++L E + + L + Sbjct: 184 KLADKQIKGVLNLVVMSVEGLKPEHVTITDMRGQVLYQPEDDGGLGLNITNSQLEYKSGL 243 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + +IE I + L +G D + V A+L+ + I+ YDPD +V RS + S++ R Sbjct: 244 ESKIEQRIQRLLMPIVGPDKVIAKVNADLDFRQRTIKTEAYDPDGQVARSEQTSEETTRG 303 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 + + + +++ ++ +NYEIN + +L+RL Sbjct: 304 TANVDGGVPEA-----NFRGDGFTGTATTQDSARETRTTNYEINKEEQQIIVPVGELKRL 358 Query: 358 SIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 S+AV+V+ G + + + I ++VS+A G + RGD + +++M F Sbjct: 359 SVAVIVDGTYTKNPDTGEMTYVPRSEEEMQRIRELVSSAVGYDEVRGDIVEVSNMSFGMQ 418 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476 +F + + ++ R +N L+ + +LV + AL + + E Sbjct: 419 DMFGDEGLMRTMLEYAQRLGKPFLNGLLIFLFLILVVRPVIMALIK------PRVAEEEI 472 Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536 + P + D ALD+ + + + + L + E Sbjct: 473 DEVAGLPEAGERLAIDESDLDEEALDT-----------------ARRLENAKAQALQLSE 515 Query: 537 INEERFAKILRKWARSEIE 555 N ++ ++L+ W + E Sbjct: 516 KNMDQAVQVLKSWLKQEAA 534 >gi|87119487|ref|ZP_01075384.1| flagellar M-ring protein [Marinomonas sp. MED121] gi|86164963|gb|EAQ66231.1| flagellar M-ring protein [Marinomonas sp. MED121] Length = 551 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 116/554 (20%), Positives = 229/554 (41%), Gaps = 31/554 (5%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 ++ L R L L + I + +AA + + P Y + + + ++I L Sbjct: 15 VELLTGFNKLTVIRQLALMVGLAASIAIGLAAILWTDGPEYKPVLSSITDYNADQIVEVL 74 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 S NI F++ +N ++ V + +AR+ LA G+ + + G E+ D+ G + F++ Sbjct: 75 SINNIPFKLDENTGALLVEADQYHQARLKLAGSGIV-NDTIVGMEIMDQEQGLGTSQFVE 133 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 R LEGE++RTI S+ I +ARVH+ +P F + +P+ASV + Sbjct: 134 GTRYRRGLEGELSRTISSLQSIKSARVHLAIPKESVFVRDTRKPSASVFLEMYPGRRLDR 193 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQAIQHEIEM 243 +AI +LV++++ L VTV+D G LL+ E ++ GK + ++ + Sbjct: 194 SQVDAIVNLVSSSISQLSAKSVTVVDQRGTLLSEKETSSELSVAGKQFDYTRKVEDVLLS 253 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 +N L +G D F++ V +++ + + + Y+PD RS + +++ T+ Sbjct: 254 RVNSILGPVVGADRFKAEVSTDVDFTSVEQTDEQYNPDLLALRSEQTLNESRNGTTNS-- 311 Query: 304 SAVTVEQNMPHVS------DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 N P + ++E N+E++ T + RL Sbjct: 312 GIPGSLTNQPPGAITAPEVANSAGAASGTNGESRQETTRNFELDRSISYTRRQQGTIRRL 371 Query: 358 SIAVVVNK-GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 S+AVVV+ + D L+ + +V A G +S RGD++++ + F Sbjct: 372 SVAVVVDDLVSIDPETSELVRTPWSDDELSRLTLLVRDAVGYDSARGDSVSVINSPFAVP 431 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476 + + + + + LV +L+ + L+ L + E Sbjct: 432 EPLPTPEELPFYQQ--EWFLSLIQPTLVGFFVLILLMVVVRPILKTLGEQNKIAVAEDAE 489 Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536 SI A T + +D ++L S+ + +I ++ + +I Sbjct: 490 ASIF-------ADETDEISDDQVSLVSAEDIMV---PGSPEKIERQLNA-----IRGLIA 534 Query: 537 INEERFAKILRKWA 550 ER A+++++W Sbjct: 535 EEPERVAQVVKQWV 548 >gi|39995518|ref|NP_951469.1| flagellar M-ring protein FliF [Geobacter sulfurreducens PCA] gi|39982281|gb|AAR33742.1| flagellar M-ring protein FliF [Geobacter sulfurreducens PCA] gi|298504518|gb|ADI83241.1| flagellar M-ring mounting plate protein FliF [Geobacter sulfurreducens KN400] Length = 527 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 129/565 (22%), Positives = 245/565 (43%), Gaps = 49/565 (8%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + + L + + +L + ++ V+ + ++ F N Y L+ L D Sbjct: 1 MPEALNKLIQPFMALPPAKRWVVGGVVGLSVIAFTILILVANRTDYRPLFTNLTSEDAGE 60 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L E + +RI+ +G +I VPS V R+ LA+ GLP G+E+FD+ N FG+ Sbjct: 61 IVTKLKEQKVPYRIAADGKAILVPSDKVYDLRLSLASDGLPQGGG-VGFEIFDRKN-FGM 118 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T F+Q++ RAL+GE++RTI ISG+ ARVH+V+P+ F++ TASV+++ Sbjct: 119 TDFVQKLNYQRALQGELSRTISQISGVEQARVHLVIPEKSLFKEDEKPATASVVLKVKGQ 178 Query: 183 SVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAI 237 + + I HLVA+A+ ++ VTVLD GKLL+ N + + + +A Sbjct: 179 RQLRENDVQGIVHLVASAIEGMNPEHVTVLDQKGKLLSKNTPGDAAGKMTASMQEVQRAY 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + E + L +G + V A + + E YDP++ V RS + S++ Q Sbjct: 239 ERSTEERLQSLLDKAVGAGKSVARVSAVFDFRQVERYEEKYDPET-VVRSEQRSEEKQDG 297 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 T V+ N+ + + + K +E NYE++ + T L ++ Sbjct: 298 ST-VTGGVPGVQTNLGRTAGQPAG---TSGGGSKNDETLNYEVSRATARTIEPVGTLSKV 353 Query: 358 SIAVVVNKGRLTEVLGRSADQ------GKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 S+A++V+ G+ + + L +I+ +V ++ G N RGD +T+ ++ Sbjct: 354 SVAILVDGKYDAAAAGKDGKEAKPKYTPRSPDELQKIDALVKSSVGFNVERGDQVTVVNI 413 Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 F + +G + + F +++ + G L + + L + + + Sbjct: 414 PFQDTGDVGAGEADKWWN---APIFLSLLKNGLIGFGFLALLLFVVRPLLKTLKPEKSTS 470 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 E + S+ + + R+ S + L Sbjct: 471 FE--------------------------PIPSAEDALNQIAE--IHRLQIGNQTVSQMEL 502 Query: 532 LHMIEINEERFAKILRKWARSEIED 556 ++ I+ + A+I++ W R + E+ Sbjct: 503 INKIKQEPYQAAQIIQNWLRDKGEE 527 >gi|300899195|ref|ZP_07117471.1| flagellar M-ring protein FliF [Escherichia coli MS 198-1] gi|300357176|gb|EFJ73046.1| flagellar M-ring protein FliF [Escherichia coli MS 198-1] Length = 511 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 133/536 (24%), Positives = 238/536 (44%), Gaps = 49/536 (9%) Query: 43 VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL 102 N P Y L+ L D I L++ NI +R S+ +I VP+ V + R+ LA QGL Sbjct: 2 ANPPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGL 61 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162 P + G+EL D+ FG++ F +++ RALEGE++RTI++I + ARVH+ MP Sbjct: 62 PKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPS 119 Query: 163 SFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-A 219 F + P+ASV + + AI HLV++AV L G+VT++D G LLT + Sbjct: 120 LFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQS 179 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 N R++ L ++ I+ I L+ +G N + V A+L+ +++ E Y Sbjct: 180 NTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYR 239 Query: 280 PDS----KVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV--------------- 320 P+ RS +L ++++S + P N P ++ Sbjct: 240 PNGDESHAALRSRQL-NESEQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQA 298 Query: 321 -PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQG 379 S + ++ E SNYE++ T + ++RLS+AVVVN L + Sbjct: 299 STTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPL----P 354 Query: 380 KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATV 439 + + +I + A G + +RGD++ + + F + + ++ F + + Sbjct: 355 LSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPFNSS---DESGGELPFWQQQA-FIDQL 410 Query: 440 INALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNI 499 + A +L+ L+ L A+R A+ + + + + AV L ++ + Sbjct: 411 MAAGRWLLVLLVAWLLWRKAVRPQLTRR-AEAMKAVQQQAQAREEVEDAVEVRLSKDEQL 469 Query: 500 ALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 +NQ R+ + V Q R+ M + + A ++R+W ++ E Sbjct: 470 QQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 511 >gi|157371187|ref|YP_001479176.1| flagellar MS-ring protein [Serratia proteamaculans 568] gi|157322951|gb|ABV42048.1| flagellar M-ring protein FliF [Serratia proteamaculans 568] Length = 563 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 133/545 (24%), Positives = 244/545 (44%), Gaps = 54/545 (9%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 + SP Y LY + D I L++ NI FR ++NG+++ +P+ V + R+ LA Sbjct: 44 LLLWAKSPDYRVLYSNINDRDGGAIVTQLTQMNIPFRFAENGAALLIPADKVHETRLRLA 103 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 GLP + G+EL D+ FG++ F ++I RALEGE++RTI+S+ + ARVH+ + Sbjct: 104 QLGLPKGGA-VGFELLDQE-KFGISQFSEQINYQRALEGELSRTIESLGPVQNARVHLAL 161 Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 P F + P+ASV + AI ++V+++V L G+VTV+D +G+L Sbjct: 162 PKPSLFVREQKSPSASVTLTLQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQSGRL 221 Query: 217 LTANEM-ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LT ++ R++ L ++ + I LA +G N R+ V A+++ T++ + Sbjct: 222 LTQSDGAGRDLNAAQLKYANEVESRYQRRIEAILAPMVGNGNARAQVTAQIDFATREQTD 281 Query: 276 IVYDPDSKVERSIRLSKDAQRSE--------------TSQPESAVTVE------------ 309 Y P+ ++ SK +S+ ++QP + T Sbjct: 282 EEYQPNQLPNKAAVRSKQMSQSDQIGGPLVGGVPGALSNQPSAPATAPIETAKPAATGNN 341 Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369 N + S + +E +NYE++ T ++RLS+AVVVN R T Sbjct: 342 ANATQPNAAATRSAASGPQNSRLDETTNYEVDRTIRHTQQKAGTVQRLSVAVVVNY-RGT 400 Query: 370 EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFM 429 + G+ LA+I +V + G +S RGDT+ + + F +N++ ++ F Sbjct: 401 DKDGKPL--PMSKEQLAQIESLVRESMGFSSTRGDTLNVVNTPFTDNEVTGG---ELPFW 455 Query: 430 DILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAV 489 + + +A +L+ L+ L +R A + + P++ Sbjct: 456 QSQA-FIDRLFDAGRYLLVLLVGWLLWRKLVRPQLQNRQAVQK---AAIAAANTPMAKPA 511 Query: 490 TTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549 + N+ +A R Q R+++ V Q R+ + + + A ++R+W Sbjct: 512 ESNKQSNEELA----------QHRKSQQRVSAEVQSQ---RIRDLADKDPRVVALVIRQW 558 Query: 550 ARSEI 554 +E+ Sbjct: 559 MSNEL 563 >gi|194292866|ref|YP_002008773.1| flagellar ms-ring protein [Cupriavidus taiwanensis LMG 19424] gi|193226770|emb|CAQ72721.1| FliF: Flagellar biosynthesis protein, M-ring protein, Belongs to the fliF family [Cupriavidus taiwanensis LMG 19424] Length = 576 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 120/561 (21%), Positives = 222/561 (39%), Gaps = 76/561 (13%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y LY L D + +L + N+ ++ ++ G ++ VP+ V + R+ LA+Q Sbjct: 42 LWSRGPDYKVLYSNLSERDGGAVLQSLQQMNVPYKFAEGGGAVMVPAEKVHETRLRLASQ 101 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S + +G EL D FG++ F +++ R LEGE+AR+I+SI+ + +ARVH+ +P Sbjct: 102 GLPKSGT-AGMELMD-NQKFGISQFAEQVNYQRGLEGELARSIESIAAVQSARVHLAIPK 159 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + +PTAS++++ AI HLV+++VP L ++++D G LL+ Sbjct: 160 PTLFVRERQKPTASIVLQLYPGRAIDEGQVAAISHLVSSSVPELTPKSISIVDQHGNLLS 219 Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 ER + L VQA++ I L +G DN R+ V A+++ + + Y Sbjct: 220 NTGNERMLDATQLKYVQALEQNYLKRIEAILTPIVGKDNVRAQVTADVDFSIVEHTDESY 279 Query: 279 DPDS----KVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSD----------------- 317 P+ RS + S+ Q+ T P N P + Sbjct: 280 KPNQDPTRTAIRSQQTSESTQQGATP-PGGVPGALSNQPPAAAVAPVTTPQTPRAGQAPG 338 Query: 318 ------------------------RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 S ++++++ NYE++ Sbjct: 339 QAGAPGAGQPGQPGQAGQAGQAAQGATATASSGPSSNRRDSTVNYELDRSVRHVQQAPGG 398 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 + RLS+AVVVN + + G+ + + LA+I + A G ++ RGD+I + + F Sbjct: 399 VRRLSVAVVVNYRQQADAKGKLVAEPLPPALLAQIQNLTKEAMGFSAERGDSINVVNSPF 458 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNIDDAKKG 472 + + + + ++ L+ + L F LRR Sbjct: 459 TAEREKAEPELPLWKQPDMIALGKSLAGYLLLALLALFAWFKVARPILRRYTAPPLPAPE 518 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 + PP A N +I + +S + + Sbjct: 519 PKDETEAVLLPPEEPA----------------NPEILRLAAKYESDLAL---------VR 553 Query: 533 HMIEINEERFAKILRKWARSE 553 + + A +++ W ++ Sbjct: 554 DAAQRDPRLVASVIKNWISND 574 >gi|188583761|ref|YP_001927206.1| flagellar MS-ring protein [Methylobacterium populi BJ001] gi|179347259|gb|ACB82671.1| flagellar M-ring protein FliF [Methylobacterium populi BJ001] Length = 538 Score = 402 bits (1032), Expect = e-109, Method: Composition-based stats. Identities = 145/541 (26%), Positives = 254/541 (46%), Gaps = 15/541 (2%) Query: 15 TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF 74 T LG RI +A+V L + F V+ P L+ L + D + + L I + Sbjct: 9 TKLGPARIAAMAAVTLTLVGFFAFVILRVSRPDMGVLFSDLSMQDSSAVIRELDARGIAY 68 Query: 75 RISDN-GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 G ++ P + + K R+ A +GLP+ GYE+FDK ++F TSF+Q + +R Sbjct: 69 ETKGELGQTVLAPRADLAKLRMDFAGKGLPAQGG-IGYEIFDKGDAFSSTSFVQNVNHLR 127 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRH 193 A+EGE+AR+I++I + AARVH+V+P+ F + P+A+++++ + AIRH Sbjct: 128 AMEGELARSIRAIGRVQAARVHLVIPERRLFERDREAPSAAIVVKLMGDLDPSQVRAIRH 187 Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEMNINKALAA 251 L A+AV L V+++D G+LL E G I+ + I + +A Sbjct: 188 LAASAVEGLKPERVSIVDERGRLLADGARGAEAEGAGALEERQAGIERRMRAQIEEIVAG 247 Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311 +G R V AEL+++ + R +DP+S+V RS + + S T E V+V Sbjct: 248 IVGQGRARVQVTAELDLNRVESRSESFDPESRVVRSTQTRSEN--SLTGGAEGQVSVGNE 305 Query: 312 MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV 371 +P + + P P+ +++ K EE +NYEI+ + T + +L+RLS+AV+V+ Sbjct: 306 LPGANQNQPP-PQQKDSSQKNEEVTNYEISRVTKVETLEGGRLKRLSVAVLVDGVYAPGA 364 Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDI 431 G++A Q + D+ +A I +V A G + RGD + + ++ F E Sbjct: 365 DGKAAYQPRSDAEIARIAALVRTAVGYDKARGDQVEVVNLRFAETPAAAEFAEPGLIQSF 424 Query: 432 LSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTT 491 LS V+ + V +LL + + +R L + E P + Sbjct: 425 LSPSKEDVMRLVELAVLSLLTLIVLMAVVRPLLR----RVLESDAPVAALAGPALALAGA 480 Query: 492 GLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWAR 551 G IA+ ++ + F S ++IN + ++ R++ M+ + ++LR W Sbjct: 481 GGEGPTEIAVRENSTNKFLES----AKINGQIQAETVERVVDMVRASPTETVEVLRNWIH 536 Query: 552 S 552 Sbjct: 537 D 537 >gi|315286666|gb|EFU46099.1| flagellar M-ring protein FliF [Escherichia coli MS 110-3] Length = 510 Score = 402 bits (1032), Expect = e-109, Method: Composition-based stats. Identities = 133/536 (24%), Positives = 237/536 (44%), Gaps = 49/536 (9%) Query: 43 VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL 102 N P Y L+ L D I L++ NI +R S+ +I VP+ V + R+ LA QGL Sbjct: 1 ANPPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGL 60 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162 P + G+EL D+ FG++ F +++ RALEGE++RTI++I + ARVH+ MP Sbjct: 61 PKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPS 118 Query: 163 SFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-A 219 F + P+ASV + + AI HLV++AV L G+VT++D G LLT + Sbjct: 119 LFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQS 178 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 N R++ L ++ I+ I L+ +G N + V A+L+ +++ E Y Sbjct: 179 NTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYR 238 Query: 280 PDS----KVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV--------------- 320 P+ RS +L ++++S + P N P ++ Sbjct: 239 PNGDESHAALRSRQL-NESEQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQA 297 Query: 321 -PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQG 379 S + ++ E SNYE++ T + ++RLS+AVVVN L + Sbjct: 298 STTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPL----P 353 Query: 380 KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATV 439 + + +I + A G + +RGD++ + + F + + G + + + Sbjct: 354 LSNEQMKQIEALTREAMGFSEKRGDSLNVVNSPF-NSSDESGGALPFWQQQVFIDQ---L 409 Query: 440 INALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNI 499 + A +L+ L+ L A+R A+ + + + + AV L ++ + Sbjct: 410 LAAGRWLLVLLVAWLLWRKAVRPQLTRR-AEAVKTVQQQAQAREEVEDAVEVRLSKDEQL 468 Query: 500 ALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 +NQ R+ + V Q R+ M + + A ++R+W ++ E Sbjct: 469 QQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 510 >gi|194365657|ref|YP_002028267.1| flagellar MS-ring protein [Stenotrophomonas maltophilia R551-3] gi|194348461|gb|ACF51584.1| flagellar M-ring protein FliF [Stenotrophomonas maltophilia R551-3] Length = 548 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 121/553 (21%), Positives = 236/553 (42%), Gaps = 21/553 (3%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ Q+F SL TR L L ++I V + + F+ P LY L+ + Sbjct: 13 EKAGQWFDRLQSLQITRRLGLMAMIAVAVAAGLFVFFWSQKPGMVPLYTGLDQKATAEAT 72 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L A I F++ I+VP + AR+ LA GL + S G+EL ++ FG++ Sbjct: 73 DLLRAAQIPFQLDPATGGITVPEKNLHDARLKLAGSGL-TDSGKLGFELMERDPGFGVSQ 131 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 F++ ALE E++RTI ++ + +RVH+ +P +F + +ASV + Sbjct: 132 FVESARYQHALETELSRTINTLRPVRDSRVHLAIPKPSAFTRQRDVASASVTLELRGGQQ 191 Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHE 240 + +AI H+VAA++P+L VTV+D +G++L+ ++ E + V+ + Sbjct: 192 LERSQVDAIVHMVAASIPDLAPERVTVVDQSGRMLSVSDPNSEAAVNAAQFEQVRRQETS 251 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I + L G V +++ + +Y+ + + RS ++S+++ + T Sbjct: 252 FNQRIRELLEPMTGPGRVNPEVSVDMDFSVTEEARELYNGEPQKLRSEQMSENS--TTTP 309 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 P+ N P ++ + K NYE++ T +++R+S+A Sbjct: 310 GPQGVPGATSNSPPGQAAAPATAQTPTESS-KNATRNYELDRTLQHTRQPAGRIKRVSVA 368 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 V+V+ G+ A Q + L + +V A G N+ RGDT+++ + F+ + Sbjct: 369 VLVDNVPRAGANGKVAPQPLSAAELTRVEALVKQAVGFNAERGDTVSVMNAPFVRDTTPV 428 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 G V +A L+G ++V L LR + + +++ Sbjct: 429 EGPA--------WWELPWVHDAGRMLLGAVVVLALLFGVLRPALRAITGQNKKNDEQALE 480 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 V MP + D ++ L ++SY + R ++ + + Sbjct: 481 PHTADVQLVDDDGMPLPALGADRAS---LGGPDALALPVDSYEERLRMAR--EAVKTDSK 535 Query: 541 RFAKILRKWARSE 553 R A++++ W ++ Sbjct: 536 RVAQVVKGWVAND 548 >gi|254473325|ref|ZP_05086722.1| flagellar M-ring protein FliF [Pseudovibrio sp. JE062] gi|211957441|gb|EEA92644.1| flagellar M-ring protein FliF [Pseudovibrio sp. JE062] Length = 562 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 193/566 (34%), Positives = 326/566 (57%), Gaps = 19/566 (3%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 MA + + + + LG R+++LA + L + AA + ++ P + LY LE DV Sbjct: 1 MAARENAEKIYSNLAELGAKRLMVLAFIGLFTFVAIGAAAYLLSRPEQEVLYANLERDDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +I +AL + I F +S +GS+ISV +AR+ LA +GLP S +GYELFD++ S Sbjct: 61 TQIGMALQASGIPFDVSADGSAISVGVGATARARMLLAEKGLPRGSG-AGYELFDEMGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQ +T++RALEGE+AR++QS+ G+ AARVH+V+P+ +FR+ +PTASV+IR Sbjct: 120 GLTSFMQSVTKIRALEGEVARSVQSMQGVKAARVHLVLPEKATFRRENQKPTASVLIRTE 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQAIQH 239 A++IR+LVAAAVP L VTVLD+ G+LL A E + G+ + + Sbjct: 180 GIQTNSIAQSIRYLVAAAVPGLTAEAVTVLDTEGQLLAAGEDAQSASTGRKAMLESNLAS 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 E I +ALA +LGV+NF +V A +N D Q++ E YDP+++VERS R+ ++ S+ Sbjct: 240 RKENAIRQALAPYLGVNNFEVSVSASVNTDNQRVSETSYDPETRVERSFRVVRENATSQN 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + E+ TVEQN+P + RS E +++EE +NYEI+++++ T D+Y++ER+SI Sbjct: 300 ASLENPTTVEQNLPEEAVSSQSGERSSEENERREELTNYEISSRTVETIFDDYRIERMSI 359 Query: 360 AVVVNKGRLTEVLGRSADQGKID-----------SYLAEINKIVSAATGINSRRGDTITI 408 AV+VN+ RL E + R + K D + + EI +I++ A G+++ RGD +++ Sbjct: 360 AVLVNRDRLVEEMSRRVEGQKGDAVVEGEAADLTAKVEEIEEIIATAAGVDTARGDKVSV 419 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 ++++F+ + + ++ D+L R+ +V+NA L+ TL++ + G LR Sbjct: 420 SAVNFVLAGQQLAAIPERTWQDVLMRNMGSVVNAGAILIVTLMIIWFG---LRPAVAFLI 476 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 K V + S+AV G + ++ L + + + + V++ + Sbjct: 477 PKTEVVEEGLPVGANSNSAAVRDGEIEGEDGQLPDYSNGDGLSGEGVDATV---VNRDNL 533 Query: 529 LRLLHMIEINEERFAKILRKWARSEI 554 +L +E+++ + A IL++W + Sbjct: 534 RKLERAVEMDDMQAAIILKQWMYDQE 559 >gi|116696304|ref|YP_841880.1| flagellar MS-ring protein [Ralstonia eutropha H16] gi|113530803|emb|CAJ97150.1| Flagellar M-ring protein [Ralstonia eutropha H16] Length = 576 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 123/563 (21%), Positives = 224/563 (39%), Gaps = 74/563 (13%) Query: 38 AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97 + SP Y LY L D + +L + N+ ++ ++ G ++ VP+ V + R+ L Sbjct: 39 VGVLWSRSPDYKVLYSNLSERDGGAVLQSLQQMNVPYKFAEGGGAVMVPAEKVHETRLRL 98 Query: 98 AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 A+QGLP S + +G EL D FG++ F +++ R LEGE+AR+I+SI+ + +ARVH+ Sbjct: 99 ASQGLPKSGT-AGMELMD-NQKFGISQFAEQVNYQRGLEGELARSIESIAAVQSARVHLA 156 Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 +P F + +PTAS++++ AI HLV+++VP L ++++D G Sbjct: 157 IPKPTLFVRERQKPTASIVLQLYPGRAIDEGQVAAISHLVSSSVPELTPKSISIVDQHGN 216 Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LL+ ER + L VQA++ I L +G DN R+ V A+++ + + Sbjct: 217 LLSNTGNERMLDATQLKYVQALEQNYLKRIEAILTPIVGKDNVRAQVTADVDFSIVEHTD 276 Query: 276 IVYDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMPHVSDR-------------- 318 Y P+ RS S+ S + P N P + Sbjct: 277 ESYKPNQDPTRSAIRSQQTSESTQQGVTPPGGVPGALSNQPPAAAAAPVTTPQTPRAGQA 336 Query: 319 ---------------------------KVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 S ++++++ NYE++ Sbjct: 337 PGQAGAPAAGQPGQPGQAAQPGQGAQVANATASSGPSSNRRDSTVNYELDRSVRHVQQAP 396 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 + RLS+AVVVN + + G+ + + LA+I + A G ++ RGD+I + + Sbjct: 397 GGVRRLSVAVVVNYRQQADAKGKLVAEPLPPALLAQIQNLTKEAMGFSADRGDSINVVNS 456 Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNIDDAK 470 F + + V + + T+ L+ + L V F LRR + Sbjct: 457 PFTAEREKAAPEVPLWKQPDMIELGKTLAGYLLLALLALFVWFKVARPVLRRYTSPPLPA 516 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 + PP A N +I + +S + Sbjct: 517 PEPRDETEAVLLPPDEPA----------------NPEILRLAAKYESDLAL--------- 551 Query: 531 LLHMIEINEERFAKILRKWARSE 553 + + + A +++ W ++ Sbjct: 552 VRDAAQRDPRLVASVIKNWIAND 574 >gi|37525871|ref|NP_929215.1| flagellar MS-ring protein [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785300|emb|CAE14241.1| flagellar basal-body M-ring protein [Photorhabdus luminescens subsp. laumondii TTO1] Length = 567 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 133/581 (22%), Positives = 249/581 (42%), Gaps = 56/581 (9%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 +Q F + + L + + +A ++ SP Y LY L D I Sbjct: 10 NQTKGFSAIINQIKADPKVPLLVAGSAAVAIVIALFLWLRSPDYRVLYSNLSDKDGGDIV 69 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L++ NI +R ++NG++I +P+ V + R+ LA QGLP + +G+EL DK FG++ Sbjct: 70 TQLTQLNIPYRFAENGAAIMIPAEQVHETRLRLAQQGLPKGGA-AGFELLDKE-KFGISQ 127 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 F +++ RALEGE++RTI+S+ + ARVH+ +P F + P+ASV + + Sbjct: 128 FSEQVNYQRALEGELSRTIESLGPVQNARVHLALPKPSLFVREQKSPSASVTVGLLQGRT 187 Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQAIQHEI 241 AI H+V+++V L G+VT++D TG+LLT + R++ L +Q +++ Sbjct: 188 LDEGQINAIVHMVSSSVAGLPPGNVTIVDQTGRLLTQADATGRDLNTSQLKYIQEVENRF 247 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK----VERSIRLSKDAQRS 297 + I L +G N + V A+++ ++ Y P+ RS +LS+ Q Sbjct: 248 QHRIETILTPVVGRGNVHAQVTAQVDFSRREETAEEYKPNQPPNQAAVRSKQLSESEQSG 307 Query: 298 E----------TSQPESAVTVEQNMPHVSDRKVPLPR---------------SLENTDKK 332 ++QP S + + P+ + + +++ Sbjct: 308 GPQVGGIPGALSNQPSSPPSAPIDKPNTKENNKNDKSDKKASSAGNSNERTVNSNRNNRR 367 Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV 392 +E +NYE++ +ERLS+AVVVN + G Q L +I + Sbjct: 368 DETTNYEVDRTIRHVQQQAGGVERLSVAVVVNYVTVEGKNGPET-QALTPEQLTKIEALT 426 Query: 393 SAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452 A G + RGD++ + + F E++ N + V +L +L+ L+ Sbjct: 427 REAMGFSKERGDSLNVVNTPFTESK-ENIEVIPVWQNPVLLEKAFDF---GRYLLLILVA 482 Query: 453 TFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS 512 L + A + +A+ + + S+ D + Sbjct: 483 WLLWRKMVVPQLAKKRAAE--------------KAALDAQKVQKRQVTESSAEMDEKTRQ 528 Query: 513 RNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + + R+++ + Q R+ + E + A ++R+W +E Sbjct: 529 KLTRQRVSAEIQSQ---RIRELAEKDPRVVALVIRQWMSNE 566 >gi|253702508|ref|YP_003023697.1| flagellar M-ring protein FliF [Geobacter sp. M21] gi|251777358|gb|ACT19939.1| flagellar M-ring protein FliF [Geobacter sp. M21] Length = 522 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 130/557 (23%), Positives = 242/557 (43%), Gaps = 48/557 (8%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + + L + + +L + L++ V L ++ F A N Y L+ L D Sbjct: 1 MPEGLKKLLEPFLALSSAKRLVVGGVALASLLGFAALIAVANKTDYRPLFANLTQEDAGE 60 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L E + ++IS +G +I VPS V R+ LA+ GLP G+E+FD+ N FG+ Sbjct: 61 IVKKLKEQKVPYQISPDGKAILVPSDNVYDLRLSLASDGLPQGGG-IGFEIFDRKN-FGM 118 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T F+Q++ RAL+GE+ RTI I+G+ +ARVH+ +P+ F++ TASV+I+ + Sbjct: 119 TEFVQKLNYQRALQGELGRTIAQIAGVESARVHLALPEKALFQEQEKPATASVVIKMKSN 178 Query: 183 SVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQAI 237 + + + HLVA+++ +D VTVLD+ GK+L ++N+ + G +A Sbjct: 179 RQLREGEVQGVVHLVASSIEGMDPEQVTVLDTRGKVLSSHSSNDPTSKLAGARQDTQRAF 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + E + L +G + V A + + E YDP+S RS + S++ + Sbjct: 239 EKTEEEKLQSLLDRVVGSGKSVARVSASFDFKQVEKYEERYDPESAAVRSEQRSEE-KGG 297 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 ++ A V+ NM R + K +E NYE++ + L ++ Sbjct: 298 ISTTASGAPGVQTNM----GRAQGAAGTTGGGSKTDETLNYEVSRSTARIVEPVGSLSKV 353 Query: 358 SIAVVVNKGRL----TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 S+A++V+ + Q + + +I +V +A G N+ RGD +T+ ++ F Sbjct: 354 SVAILVDGKYELAPGAKPDAAPKYQPRSPDEMQKIEALVKSAVGFNAERGDQVTVANIPF 413 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 ++ G + + + T+I + + L + F + L +L I+ Sbjct: 414 -QDTGDQVGEPPAWYDAPVVQ---TLIKNGLIGLAFLALLFYVIRPLMKLLKIEKPAH-- 467 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 PI + ++ + + L L+ Sbjct: 468 -------HFLPIQDDAEQAQLLEM-------------------QKVEHEKMRITQLELVE 501 Query: 534 MIEINEERFAKILRKWA 550 ++ + + A+IL+ W Sbjct: 502 KVKQDPYQAAQILQNWL 518 >gi|206890854|ref|YP_002248115.1| flagellar M-ring protein FliF [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742792|gb|ACI21849.1| flagellar M-ring protein FliF [Thermodesulfovibrio yellowstonii DSM 11347] Length = 505 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 132/557 (23%), Positives = 240/557 (43%), Gaps = 57/557 (10%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 MAI D++ ++ ++ R L LA + L+ + + ++ Y LY L D Sbjct: 1 MAITDRVKTVLENIKNMPLNRKLALAGLTLIVFAIILTLFLWLPKQDYQVLYSNLSAEDA 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 + L E + +++ DN +I VPS V + R+ LA+QG+P S G+E+FDK Sbjct: 61 GNVINKLKEKKVPYQVKDN--AIYVPSQKVHELRLELASQGIP-SGGGVGFEIFDKTQ-I 116 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLT F Q + +RAL+GE+ RTI+ + + RVHI +P+ F + PTASV+++ Sbjct: 117 GLTEFSQRVNYIRALQGELQRTIKQLQEVDQVRVHIAIPEKSIFTEKEDHPTASVVLKLK 176 Query: 181 NPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS-LSIVQAI 237 + +I HLV+++V L VTV+D G LL+A + + + + + I Sbjct: 177 PGRALSKEQVSSIVHLVSSSVEGLSPQYVTVVDQYGNLLSAPKDSTQLAEATHIEYKRNI 236 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + E NI L +G V A+++ + E YDPD+ R+ + +++ S Sbjct: 237 EKTYEKNIQSMLENIVGKGKAIVRVSADIDFSKVEKVEEKYDPDTIAIRNEQRTQEKTMS 296 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 Q V N P + + + K++E NYE++ +++++ Sbjct: 297 --PQQGGIPGVLSNQPG--QPQTGATQQNIQSQKQQESINYEVSKSISKILQSTGQIKKI 352 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 S+AV+++ G E G+ + D + + ++V A+ G N RGD + + S+ F + Sbjct: 353 SVAVLID-GIYKEEKGKKVYVPRSDEEIKKYQELVQASIGYNKERGDYVIVESIPF---E 408 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 + + + I + +I ++ + L V + L++ KK V + Sbjct: 409 IVPEEKPGIDYWGIATTILKYLIPLVIIALIILFVVKPIIELLKKPVEEKIKKKEIVISE 468 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR--LLHMI 535 + P V K+ D+R + H+ Sbjct: 469 EAVPP----------------------------------------VMKERDIREEIRHIA 488 Query: 536 EINEERFAKILRKWARS 552 N ++ ILR+W Sbjct: 489 RTNPKKVIAILREWITE 505 >gi|324018846|gb|EGB88065.1| flagellar M-ring protein FliF [Escherichia coli MS 117-3] Length = 512 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 133/536 (24%), Positives = 237/536 (44%), Gaps = 49/536 (9%) Query: 43 VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL 102 N P Y L+ L D I L++ NI +R S+ +I VP+ V + R+ LA QGL Sbjct: 3 ANPPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGAIEVPAEKVHELRLRLAQQGL 62 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162 P + G+EL D+ FG++ F +++ RALEGE++RTI +I + ARVH+ MP Sbjct: 63 PKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELSRTIATIGPVKGARVHLAMPKPS 120 Query: 163 SFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-A 219 F + P+ASV + + AI HLV++AV L G+VT++D G LLT + Sbjct: 121 LFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQS 180 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 N R++ L ++ I+ I L+ +G N + V A+L+ +++ E Y Sbjct: 181 NTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYR 240 Query: 280 PDS----KVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV--------------- 320 P+ RS +L ++++S + P N P ++ Sbjct: 241 PNGDESHAALRSRQL-NESEQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQA 299 Query: 321 -PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQG 379 S + ++ E SNYE++ T + ++RLS+AVVVN L + Sbjct: 300 STTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPL----P 355 Query: 380 KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATV 439 + + +I + A G + +RGD++ + + F + + ++ F + + Sbjct: 356 LSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPFNSS---DESGGELPFWQQQA-FIDQL 411 Query: 440 INALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNI 499 + A +L+ L+ L A+R A+ + + + + AV L ++ + Sbjct: 412 LAAGRWLLVLLVAWLLWRKAVRPQLTRR-AEAMKAVQQQAQAREEVEDAVEVRLSKDEQL 470 Query: 500 ALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 +NQ R+ + V Q R+ M + + A ++R+W ++ E Sbjct: 471 QQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 512 >gi|300994277|ref|ZP_07180829.1| flagellar M-ring protein FliF [Escherichia coli MS 200-1] gi|300304942|gb|EFJ59462.1| flagellar M-ring protein FliF [Escherichia coli MS 200-1] Length = 508 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 132/533 (24%), Positives = 235/533 (44%), Gaps = 49/533 (9%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSS 105 P Y L+ L D I L++ NI +R S+ +I VP+ V + R+ LA QGLP Sbjct: 2 PDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKG 61 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 + G+EL D+ FG++ F +++ RALEGE++RTI++I + ARVH+ MP F Sbjct: 62 GA-VGFELLDQE-KFGISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFV 119 Query: 166 KIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEM 222 + P+ASV + + AI HLV++AV L G+VT++D G LLT +N Sbjct: 120 REQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTS 179 Query: 223 ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS 282 R++ L ++ I+ I L+ +G N + V A+L+ +++ E Y P+ Sbjct: 180 GRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIHAQVSAQLDFASKEQTEEQYRPNG 239 Query: 283 ----KVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV----------------PL 322 RS +L ++++S + P N P ++ Sbjct: 240 DESHAALRSRQL-NESEQSGSGYPGGVPGALSNQPAPANNAPISTPPTNQNNRQQQASTT 298 Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382 S + ++ E SNYE++ T + ++RLS+AVVVN L + + Sbjct: 299 SNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSN 354 Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINA 442 + +I + A G + +RGD++ + + F + + G + ++ A Sbjct: 355 EQMKQIEALTREAMGFSEKRGDSLNVVNSPF-NSSDESGGALPFWQQQAFIDQ---LLAA 410 Query: 443 LVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALD 502 +L+ L+ L A+R A+ + + + + AV L ++ + Sbjct: 411 GRWLLVLLVAWLLWRKAVRPQLTRR-AEAVKTVQQQAQAREEVEDAVEVRLSKDEQLQQR 469 Query: 503 SSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 +NQ R+ + V Q R+ M + + A ++R+W ++ E Sbjct: 470 RANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 508 >gi|167736645|ref|ZP_02409419.1| flagellar MS-ring protein [Burkholderia pseudomallei 14] Length = 465 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 115/405 (28%), Positives = 193/405 (47%), Gaps = 15/405 (3%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 53 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 112 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++SI+ + AARVH+ +P Sbjct: 113 LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 170 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ V + A+ +V+++VP++ +VT++D G LLT Sbjct: 171 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 230 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 231 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 290 Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH--------VSDRKVPLPRSLEN 328 P+ ++S S+ S S N P S+ + P + Sbjct: 291 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 350 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 +D+K+ +NYE++ ++RLS+AVVVN T+ GR Q LA++ Sbjct: 351 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQV 410 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433 ++V A G + +RGD++ + + F + D++ Sbjct: 411 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIE 455 >gi|197104328|ref|YP_002129705.1| flagellar M-ring protein FliF [Phenylobacterium zucineum HLK1] gi|196477748|gb|ACG77276.1| flagellar M-ring protein FliF [Phenylobacterium zucineum HLK1] Length = 548 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 140/559 (25%), Positives = 241/559 (43%), Gaps = 21/559 (3%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++QLL + G R+ + + + A + P LY L++ + I Sbjct: 1 MNQLLAAIQRF---GIGRLAAILGIGAGLAAVLFAMTMGLGEPK-ALLYSNLDLKEAGSI 56 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + AL +A I + + +GS+I V V R+ L+++GLP++ S GYE+FD + G T Sbjct: 57 TQALDQAGIKYEVKGDGSTILVGRDKVAATRLMLSSRGLPTAGS-VGYEIFDDAKALGQT 115 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 F+Q++ R RALEGE+ARTI+S+ GI +ARVH+V+P F++ +P+ASV I + Sbjct: 116 DFVQQLNRQRALEGELARTIRSLDGITSARVHLVLPKRQLFQEEAEQPSASVNIGVGGRA 175 Query: 184 -VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242 + AI++L+A AVPNL VTV+D K L+ + + ++ S ++ I Sbjct: 176 PSPEQVRAIQNLIAGAVPNLRPDRVTVVDQHAKTLSGGD--TGMAAEADSRKSEVEQRIA 233 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 + + +G R V AEL + +++ +DPD +V RS + + R Sbjct: 234 KQVKNLIEGVVGPGKARVNVSAELELARVTVQQETFDPDGQVIRSESTTDENSRENQEDG 293 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 V N+ + + ++E +NYEI+ + +++RLS+AV Sbjct: 294 AGQAGVAGNL-PGAAALGGGGLVGSQSGRQESTTNYEISKTVRTEVQEPGQVKRLSVAVA 352 Query: 363 VNKGRLTEVLGRS-ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 V+ G+ A + + I ++V A G N RGD +++ ++ F Sbjct: 353 VDGVTAIGADGQPGAYTPRTAEEMQRIEQLVRTAVGFNQDRGDQVSVINVRFPTPDTVGG 412 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 M + V + +L+ L + G G ++ Sbjct: 413 VEAANPLMGFDKNDIMRAVEIGVMAIVGILMLIFVARPLLK----SATGGGGGGLPMMMG 468 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ-------SRINSYVSKQSDLRLLHM 534 P ++ VTT IA D + Q + + +RI V S R+ Sbjct: 469 GPQVTRVVTTADGQPMQIAADGTAQLALPGPGHTELESKIDMARIEGQVKASSVKRVAEF 528 Query: 535 IEINEERFAKILRKWARSE 553 +E + E ILR W Sbjct: 529 VEKHPEESVAILRSWLHET 547 >gi|78355400|ref|YP_386849.1| flagellar M-ring protein FliF [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217805|gb|ABB37154.1| flagellar M-ring protein FliF [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 539 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 138/555 (24%), Positives = 254/555 (45%), Gaps = 39/555 (7%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 +D+ F+ + R + + + +V + +F F++N P Y LY KL D NR+ Sbjct: 8 VDKAKTFWTRISMSQR---VFIVGLTVVVVGIFFGLIFWINQPDYRVLYSKLTPEDANRV 64 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L + +R+ + GS+I VP+ V R+ +A +G G+E+FD++ G T Sbjct: 65 VTVLQAQKVRYRLDNGGSTIMVPADRVYDMRLMVAGEGSVV-GQGVGFEIFDQI-KVGQT 122 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP- 182 F+Q+I RAL+GE++RTI + +ARVH+V+P F + +P+ASV+++ + Sbjct: 123 DFVQKINYQRALQGELSRTIAEFPAVESARVHLVIPHRSLFIEEQMQPSASVVLKLQDGK 182 Query: 183 -SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQAIQ 238 K +A+ +LV +V LD G ++V D++GK+L + E+++ G L +Q Sbjct: 183 KMDEKDVQAVVNLVTMSVEGLDQGKISVADTSGKILYYPKDEQSLDGMTSTQLEHKLTMQ 242 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 E I + L +G + V A+L+ + IR+ ++DP+S V RS +++A++ Sbjct: 243 QNFERRIEELLYPVIGPGKVIAKVNADLDFSQKTIRKKLFDPESSVVRSEIRTEEARKGT 302 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 ++ + + S E+++++ +NYEIN + +L+RLS Sbjct: 303 SNVNAGVPEA-----NFRGDGMSGGTSTEDSNRETRNTNYEINEEEQNIIAPVGQLDRLS 357 Query: 359 IAVVVNKGRLT-EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 +AV+V+ E G + D +A I ++V++A G + RGD + ++S+ F + Sbjct: 358 VAVIVDGTYEKNEETGEWTYVPRSDEEVARIRQLVASAVGFDRARGDVLEVSSISFGGPE 417 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 ++ MD R ++NAL+ L + + + + V G Sbjct: 418 ADTYMSLAEVIMDYALRLGKPLLNALL----VFLFLVMVVRPVVLALIRPKVEGEVVEGL 473 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 L A+ G D + DI +H+ L + E Sbjct: 474 EGLPTGEERLALIEGEEDMDAMDALKKIDDIKAHA-------------------LQLSEQ 514 Query: 538 NEERFAKILRKWARS 552 N E+ IL+ W + Sbjct: 515 NMEQAVGILKSWLKD 529 >gi|238796932|ref|ZP_04640436.1| Flagellar M-ring protein [Yersinia mollaretii ATCC 43969] gi|238719192|gb|EEQ11004.1| Flagellar M-ring protein [Yersinia mollaretii ATCC 43969] Length = 563 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 125/582 (21%), Positives = 237/582 (40%), Gaps = 59/582 (10%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + + + + + ++L + + L +A + +P Y LY + D I Sbjct: 11 NNTVNLMAALERIRASPKIVLLICVSAAVTLLIALLLWAKAPDYRVLYSNISDQDGGAIV 70 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L++ N+ +R D G +I VP V +AR+ LA GLP S G+EL D+ FG++ Sbjct: 71 AQLAQMNVPYRFEDRGGAIMVPVDKVYEARLKLAQLGLPKGGS-VGFELLDQE-KFGISQ 128 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 F +++ RALEGE++RTI+++ + ARVH+ +P F + +ASV + N Sbjct: 129 FSEQVNFQRALEGELSRTIETLGPVNGARVHLAIPKPSMFVREQKPSSASVTVNLSNGRS 188 Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242 + AI +L+A+AVP L+ +VT++D G LLT + + L ++ + + Sbjct: 189 LESGQVSAISYLIASAVPGLNADNVTIVDQGGHLLTQR-GGQEVQTSQLKFTSEVEADFQ 247 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---- 298 I LA +G +N ++ V A+L+ T + + P++ ++ S+ + SE Sbjct: 248 QRIQSILAPIVGRNNVKAQVTAQLDFTTHEQTAEQFQPNTASDKMSIRSRQSSDSEQGSK 307 Query: 299 ----------TSQPESAVTVEQNMP--------------HVSDRKVPLPRSLENTDKKEE 334 ++QP + T P + + ++++ Sbjct: 308 NGVGGVPGALSNQPPTPATAPITQPVGAKEATPTTPTTPGAKGAATTVATPVPFNNRRDN 367 Query: 335 QSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSA 394 +NYE++ +ERLS+AVVVN E + + +IN +V Sbjct: 368 TTNYELDRTLTHIKRSAGSIERLSVAVVVNYLPAKE----GVPAALSKAQMDQINSLVKE 423 Query: 395 ATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTF 454 A G + RGDT+ I + F + V F ++ A +L+ ++ F Sbjct: 424 AVGFSVERGDTVNIVNSLFSD----VEEEVAPPFWKQAG-FINLLMAAGRYLLVAIVAWF 478 Query: 455 LGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRN 514 A++ + + I + + + + Sbjct: 479 FWRKAIQP--------------AWMRNQELILARLELEKEARQAELDANKRKAESGAKNK 524 Query: 515 LQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIED 556 + R+ ++ QS L + E A +LR+W +++ Sbjct: 525 AEQRVEVELNTQS---LRELAEQEPRVIALVLRQWMNKDLDS 563 >gi|189426353|ref|YP_001953530.1| flagellar M-ring protein FliF [Geobacter lovleyi SZ] gi|189422612|gb|ACD97010.1| flagellar M-ring protein FliF [Geobacter lovleyi SZ] Length = 530 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 130/563 (23%), Positives = 243/563 (43%), Gaps = 48/563 (8%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + + L + + +L + L++ V+L ++ F N Y L+ L D Sbjct: 1 MPEGLKRIVEPFMALAPGKRLLVGGVVLACLLSFALLIMLANRTDYRPLFTNLASEDAGE 60 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L EA ++I+ +G I VP+ V + R+ LA++GLP G+E+FD+ N FG+ Sbjct: 61 IVKKLKEAKTPYQITPDGKGIMVPADKVYELRLSLASEGLPQGGG-VGFEIFDRKN-FGM 118 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T F+Q++ RAL+GE+ARTI ISG+ ARVH+V+P+ F++ PTASV+++ Sbjct: 119 TEFVQKLNYQRALQGELARTITQISGVEQARVHLVIPEKTLFKEAEKPPTASVVLKMKGN 178 Query: 183 SVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-----EMERNILGKSLSIVQ 235 + + + HLV++++ ++ +VTVLDS GK+L+ + + Sbjct: 179 KNLRDNEVQGVVHLVSSSIEGMNADNVTVLDSRGKILSKGGNGMADASAKATSAMQETQR 238 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 + +E + L +G + V A + + E +DP++ RS + S++ + Sbjct: 239 GYERNVEERLQTLLDRVVGGGKSVARVSATFDFKQVERVEEKFDPETIAVRSEQRSEE-K 297 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 ++ V+ N+ + + K +E NYE++ + T L Sbjct: 298 AGGSAVSTGVPGVQTNLGRTAPGAG---GAAGGGSKNDETLNYEVSRSTSRTVEPVGTLS 354 Query: 356 RLSIAVVVNKGRLTEVLGRSA------DQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 ++S+A++V+ T G+ + L +I +V A G N RGD I+I Sbjct: 355 KVSVAILVDGKYETGAPGKDGAAGKAKYVPRSPDELQKIEALVKGAVGFNQERGDQISIQ 414 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 ++ F + T + ++ F T+ L+ +G L L L ++ + N A Sbjct: 415 NIAFQDAGEAAGSTESAKWW--MNPFFLTLFKNLMIALGFLA---LMLFVVKPMLNTLRA 469 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 + P + ++P+ + +S R + Sbjct: 470 AR------------PARPDILEAIVPDAQEKMSASE------------RAQLAMHMAEQQ 505 Query: 530 RLLHMIEINEERFAKILRKWARS 552 L+ + N + A+IL+ W Sbjct: 506 ELMEKAKTNPYQVAQILQNWLGE 528 >gi|118581826|ref|YP_903076.1| flagellar M-ring protein FliF [Pelobacter propionicus DSM 2379] gi|118504536|gb|ABL01019.1| flagellar M-ring protein FliF [Pelobacter propionicus DSM 2379] Length = 528 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 123/563 (21%), Positives = 249/563 (44%), Gaps = 49/563 (8%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + + L + + +L + +++A V ++ + F F N Y L+ L D Sbjct: 1 MPEGLQRLIEPFMALSPGKRMLIAGVAILSVAAFAVLIFVANRVDYRPLFTNLSTEDAAE 60 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L + ++I+ +G I VP+ +V + R+ LA++GLP G+E+FD+ N FG+ Sbjct: 61 IVKKLKDNKTPYQITADGKGIMVPADLVYEQRLALASEGLPQGGG-VGFEIFDRKN-FGM 118 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T F+Q+I RAL+GE++RTI ++G+ AR+H+V+P+ F++ TAS++++ + Sbjct: 119 TEFVQKINYQRALQGELSRTISQLNGVEQARIHLVIPEKSLFKENEKPSTASIVLKMKSG 178 Query: 183 SVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQA---- 236 + + I HLVA+++ ++ VTVLDS GK+L + + K+ S++Q Sbjct: 179 RSLRQNEVQGIVHLVASSIEGMEADQVTVLDSRGKVLNKGGGDPDPTSKATSVMQETQRI 238 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 + +E I L +G + V A + + E +DP+S RS + S++ Sbjct: 239 YEKNVEERIQSMLDPVVGSGRAIARVSALFDFKQVERLEEKFDPESIAVRSEQRSEEKGA 298 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 + + A V ++ K +E NYE++ + L R Sbjct: 299 TAVN----AAGVPGVQTNLGRTGAGGATQAGGAAKNDETLNYEVSRTTAKIIEPVGALSR 354 Query: 357 LSIAVVVNKGRLTEVLGRSADQ------GKIDSYLAEINKIVSAATGINSRRGDTITITS 410 LS+AV+V+ + + L +I +V +A G N+ RGD + I + Sbjct: 355 LSVAVLVDGKYALPTAVKDGQTATPKYIPRSPEELQKIEALVKSAVGFNAERGDQLAIQN 414 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 + F + + Q + + F ++ L+ +G + + + L I Sbjct: 415 IPFQDTGELGNIETQKWWNNPF---FMSLFKNLLIGLGFMALIIFVIRPLLVSLKI---- 467 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 + P+ ++++ ++ + +++I+ +++Q + Sbjct: 468 ----------------------VRPSARESIETVHEISDKLTSAERAQISMQMAEQQN-- 503 Query: 531 LLHMIEINEERFAKILRKWARSE 553 L+ + + + A+IL+ W + Sbjct: 504 LIDTAKKDPYQVAQILQNWIGED 526 >gi|332702978|ref|ZP_08423066.1| flagellar M-ring protein FliF [Desulfovibrio africanus str. Walvis Bay] gi|332553127|gb|EGJ50171.1| flagellar M-ring protein FliF [Desulfovibrio africanus str. Walvis Bay] Length = 533 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 132/559 (23%), Positives = 254/559 (45%), Gaps = 41/559 (7%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L++L F+ + R +++ + +++F+ ++N P Y LY L D R+ Sbjct: 9 LNKLTAFWSDRSMAQR---VMIGGLAASLVVIFLLLIVWLNQPDYKILYSNLPPEDAGRV 65 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + L + ID+++ D+G ++ VPS V + R+ +A +GL + G+ELFD+V G T Sbjct: 66 AEQLKKQKIDYKLEDSGKTVLVPSDQVYQLRLDMAGEGL-LHGTGLGFELFDEV-KIGQT 123 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 F+Q I RAL+GE++RTI + ARVHIVMP F + + PTAS++++ Sbjct: 124 DFVQRINYQRALQGELSRTITEFPEVERARVHIVMPHKSLFIEEQSPPTASIILKLAEGR 183 Query: 184 --VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQAIQ 238 K EAI +LV+ +V LD +TV D GKLL + + ++ G L +Q Sbjct: 184 ELNQKQIEAIVNLVSLSVEGLDKSQITVADVAGKLLFQADSDDSVKGLTLGQLEYRTTLQ 243 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 +E I + L +GV + V A+++ + I + +YDP S V RS + +++ + Sbjct: 244 RNLEQRIEQLLTPVVGVGKVIARVNADVDFSQKTITKDIYDPSSAVVRSEQRTEEQTKGR 303 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 + P+ S ++++++ +N+EIN + + +++RLS Sbjct: 304 ANIEGGEPD-----PNFRGDGFNGSLSSQDSNRETRTTNFEINKEQQSIVVPVGEIDRLS 358 Query: 359 IAVVVNKGRLTEV--LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 +AV+V+ G + + I ++V G + RGD I ++++ F E Sbjct: 359 VAVIVDGTWQAPAEGEGEPVWVPRSQEEIQRITELVRNTVGFSQSRGDAIEVSNISFGEP 418 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476 +F ++ + ++ + R ++N L+ + + + L A + Sbjct: 419 DMFGEPSLMQTMLEYMQRLGKPILNGLLIFLFL---LLIVRPVVLSLIKPKVAAEEIEEL 475 Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536 S+ ++ +AL+ QD +L R+ + + L + E Sbjct: 476 ISLPE-------------ADERLALEEGVQDEVL---DLNRRLE-----LAKAQALQLAE 514 Query: 537 INEERFAKILRKWARSEIE 555 + ++ +L+ W + E Sbjct: 515 KDMDQAVAVLKTWLKQEAA 533 >gi|90104474|gb|ABD86511.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris BisB18] Length = 547 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 139/554 (25%), Positives = 241/554 (43%), Gaps = 22/554 (3%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + L+ F K LG R++ + +V I F V +P L+ L V D + I Sbjct: 9 VQGLVSFLKG---LGAARLMAMIAVTAALIGFFAFVIMRVTTPQMTTLFTDLSVEDSSGI 65 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L I F I + GS I VP V + R+ LA GYE+FDK ++ G T Sbjct: 66 IKDLERQAIPFEIRNEGSVIMVPKDKVTRLRMKLAEG-GLPKGGGVGYEIFDKSDALGST 124 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 SF+Q I +RALEGE+ARTI++I I AARVH+V+P+ F + P+AS+++R Sbjct: 125 SFVQNINHLRALEGELARTIRAIDRIQAARVHLVLPERPLFSRETPEPSASIVLRVRGAL 184 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQA--IQHEI 241 + AIRH+VA+AV L V+++D G+LL + + + + Sbjct: 185 EPQQVRAIRHVVASAVNGLKPQRVSIVDEAGQLLADGAAGDPASDGATGDERRAGFEKRM 244 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + +++ +G R + A+ + + +DP+ +V RS + +++ ++ + Sbjct: 245 RNQVEAIVSSVVGSGRARVQLTADFDYNKVTQTSDKFDPEGRVLRSSQSREESSQTAAAN 304 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 + VTV +P + + + K EE +NYEI+ + + ++ R+S+AV Sbjct: 305 -DGQVTVNNELPGAQAGAG-AAVARDQSKKSEETNNYEISRVTKTEITEAGRVNRISVAV 362 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 +V+ G Q + L I +V +A G + +RGD + + ++ F E Sbjct: 363 LVDGIYGKNDKGEMVYQERSKDQLDRIAALVRSAIGFDQKRGDQVEVVNLRFAEAPSVPP 422 Query: 422 GTVQ---VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 + + VI V ++ L+V F+ + L R I A+ G G Sbjct: 423 VAEPGGLLGMVQFTKDDVMYVIELAVMMLLGLVVMFMVIRPLVR--RILAAEPGAAGANG 480 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 + + S I D + +++ V QS R+ + + N Sbjct: 481 VPALTDASGTA---------IGPDGLPLVAPGPNMIDIAQVQGQVHAQSVHRVGELADRN 531 Query: 539 EERFAKILRKWARS 552 A I+R+W + Sbjct: 532 PNETAAIVRQWLQE 545 >gi|71906412|ref|YP_283999.1| flagellar MS-ring protein [Dechloromonas aromatica RCB] gi|71846033|gb|AAZ45529.1| Flagellar FliF M-ring protein [Dechloromonas aromatica RCB] Length = 584 Score = 399 bits (1024), Expect = e-108, Method: Composition-based stats. Identities = 137/585 (23%), Positives = 236/585 (40%), Gaps = 61/585 (10%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 +D+L + F LG + ++ I I + + A + P + L+ L D I Sbjct: 18 VDRLREAF---NRLGSQQKIVFMVAIAALIAIIVGAILWSRQPDWKVLFSNLTEKDGGSI 74 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + L + NI R S++G ++ VPS V + R+ LA+QGLP G+EL + FG++ Sbjct: 75 AAILEQQNIPHRYSNSG-ALLVPSDRVHEVRLKLASQGLPRGGM-VGFELME-NQKFGVS 131 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 F +++ R LEGE+ARTIQSI + +ARVH+ +P F + +PTASVM+ Sbjct: 132 QFAEQVNYQRGLEGELARTIQSIGSVQSARVHLAIPKPSVFVREEQKPTASVMLNLYPGR 191 Query: 184 VYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAIQ 238 I HLV+++VP L +VTVLD +G LL+ + E + + V ++ Sbjct: 192 TLDGGQIAGITHLVSSSVPQLPASNVTVLDQSGALLSQLKSKLTEAGLDPTQIKYVHDVE 251 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 + I I++ L+ LG DNF+ V A+++ + Y P++ E + S+ + Sbjct: 252 NSIIKRIDEILSPLLGADNFKVQVAADIDFSQTEQTAESYRPNNTPESTSIRSQQNNETA 311 Query: 299 -------------TSQPESAVTVEQNMPHVSDRKVP--------------------LPRS 325 T+QP T P Sbjct: 312 NVNQAAGGVPGALTNQPPVPATAPLTQPATGTTPGQPAKPGEPQGKIDAAGVTAPLNAAG 371 Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385 + K NYE++ T + RLS AVVVN + + G+ + D+ + Sbjct: 372 QPISTSKNATINYELDKTIRHTRQGMGNIRRLSAAVVVNHRKDVDKTGKPLTKAIPDAEM 431 Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445 +IN++V A G RGDT+++ + F + S + D + + + + L + Sbjct: 432 KQINELVREAMGFTKERGDTLSVANAPF--TAIDKSENELPIWKD--PENVSYIKDILKY 487 Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505 L+ ++ FL + ++ + E G K + D S Sbjct: 488 LLIAAIIAFLYIKLIQPSLKTMFPARHE-GEKHAGDGTGPGGIFGGITGSAEEAGEDGST 546 Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 Q + + E + + A I++ W Sbjct: 547 QVTIDNYAIKIQKA------------REFAEKDSKAVANIIKDWM 579 >gi|162136034|ref|YP_530830.2| flagellar MS-ring protein [Rhodopseudomonas palustris BisB18] Length = 539 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 139/554 (25%), Positives = 246/554 (44%), Gaps = 22/554 (3%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + L+ F K LG R++ + +V I F V +P L+ L V D + I Sbjct: 1 MQGLVSFLKG---LGAARLMAMIAVTAALIGFFAFVIMRVTTPQMTTLFTDLSVEDSSGI 57 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L I F I + GS I VP V + R+ LA GYE+FDK ++ G T Sbjct: 58 IKDLERQAIPFEIRNEGSVIMVPKDKVTRLRMKLAEG-GLPKGGGVGYEIFDKSDALGST 116 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 SF+Q I +RALEGE+ARTI++I I AARVH+V+P+ F + P+AS+++R Sbjct: 117 SFVQNINHLRALEGELARTIRAIDRIQAARVHLVLPERPLFSRETPEPSASIVLRVRGAL 176 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQA--IQHEI 241 + AIRH+VA+AV L V+++D G+LL + + + + Sbjct: 177 EPQQVRAIRHVVASAVNGLKPQRVSIVDEAGQLLADGAAGDPASDGATGDERRAGFEKRM 236 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + +++ +G R + A+ + + +DP+ +V RS + +++ ++ + Sbjct: 237 RNQVEAIVSSVVGSGRARVQLTADFDYNKVTQTSDKFDPEGRVLRSSQSREESSQTAAAN 296 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 + VTV +P + + + K EE +NYEI+ + + ++ R+S+AV Sbjct: 297 -DGQVTVNNELPGAQAGAG-AAVARDQSKKSEETNNYEISRVTKTEITEAGRVNRISVAV 354 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 +V+ G Q + L I +V +A G + +RGD + + ++ F E Sbjct: 355 LVDGIYGKNDKGEMVYQERSKDQLDRIAALVRSAIGFDQKRGDQVEVVNLRFAEAPSVPP 414 Query: 422 GTVQ---VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 + + VI V ++ L+V F+ + L R I A+ G G Sbjct: 415 VAEPGGLLGMVQFTKDDVMYVIELAVMMLLGLVVMFMVIRPLVR--RILAAEPGAAGANG 472 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 + P + + + D + L + ++ +++ V QS R+ + + N Sbjct: 473 V----PALTDASGTAIGPDGLPLVAPGPNMID-----IAQVQGQVHAQSVHRVGELADRN 523 Query: 539 EERFAKILRKWARS 552 A I+R+W + Sbjct: 524 PNETAAIVRQWLQE 537 >gi|300931151|ref|ZP_07146498.1| flagellar M-ring protein FliF [Escherichia coli MS 187-1] gi|300461008|gb|EFK24501.1| flagellar M-ring protein FliF [Escherichia coli MS 187-1] Length = 507 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 131/533 (24%), Positives = 237/533 (44%), Gaps = 49/533 (9%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSS 105 P Y L+ L D I L++ NI +R S+ +I VP+ V + R+ LA QGLP Sbjct: 1 PDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKG 60 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 + G+EL D+ FG++ F +++ RALEGE++RTI++I + ARVH+ MP F Sbjct: 61 GA-VGFELLDQE-KFGISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFV 118 Query: 166 KIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEM 222 + P+ASV + + AI HLV++A+ L G+VT++D G LLT +N Sbjct: 119 REQKSPSASVTVNLLPGRALDEGQISAIVHLVSSALAGLPPGNVTLVDQGGHLLTQSNTS 178 Query: 223 ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS 282 R++ L ++ I+ I L+ +G N + V A+L+ +++ E Y P+ Sbjct: 179 GRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNG 238 Query: 283 ----KVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV----------------PL 322 RS +L ++++S + P N P ++ Sbjct: 239 DESHAALRSRQL-NESEQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTT 297 Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382 S + ++ E SNYE++ T + ++RLS+AVVVN L + + Sbjct: 298 SNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSN 353 Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINA 442 + +I + A G + +RGD++ + + F + + ++ F + ++ A Sbjct: 354 EQMKQIEDLTREAMGFSEKRGDSLNVVNSPFNSS---DESGGELPFWQQQA-FIDQLLAA 409 Query: 443 LVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALD 502 +L+ L+ L A+R A+ + + + + AV L ++ + Sbjct: 410 GRWLLVLLVAWLLWRKAVRPQLTRR-AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQR 468 Query: 503 SSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 +NQ R+ + V Q R+ M + + A ++R+W ++ E Sbjct: 469 RANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 507 >gi|284007155|emb|CBA72437.1| flagellar M-ring protein FliF [Arsenophonus nasoniae] Length = 554 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 141/566 (24%), Positives = 246/566 (43%), Gaps = 38/566 (6%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L L F S + +++ + + I F+AA F++ Y +Y L D I Sbjct: 12 LKGLSTIFDKIKSDPKVPLIVAGA---LAITFFIAAMFWLQGADYRPVYTNLSDKDGGEI 68 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 LS+ NI +++S +GS + VP+ V + R+ LA QGLP N+G+EL D+ FGL+ Sbjct: 69 VTQLSQMNIPYQLSADGSMVKVPADQVHEVRLKLAQQGLPKGG-NAGFELLDQE-KFGLS 126 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 F ++I RALEGE+A+TI+S+ + ARVH+ +P F + PTASV + N Sbjct: 127 QFSEQINYQRALEGELAKTIESLGVVQRARVHLAIPKPSLFVREQKNPTASVTLNLQNGR 186 Query: 184 VYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQAIQHE 240 AI H+++++V L +VT++D G LLT + R++ L+ VQ+I++ Sbjct: 187 KLDEGQIAAIVHMISSSVSGLASSNVTIVDQLGNLLTQPDGISRDLNLTQLNYVQSIENR 246 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 + I + +G N + V A++N + Y P+ S SK RSE + Sbjct: 247 YKQRIESIIMPLVGRGNVHAQVTAQINFARTEETAEEYKPNQPPNESAVRSKQTSRSEQN 306 Query: 301 QP---ESAVTVEQNMPH---------VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 N P +D+ P P + + + +E +NYEI+ + T Sbjct: 307 GQLLVGGVPGALSNQPTPAPKAPIDKPNDKNAPQPINNNHNSRVDETTNYEIDRRIRHTQ 366 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 H L+RLS+A++VN ++ D L +I + A + +RGD++ + Sbjct: 367 HQIGNLQRLSVAIIVNYAD-SDKKENDDSLPLTDEKLTQIKTLAQEAMEFSEQRGDSLYV 425 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 + F + Q ++ + A V+ +L+ LL L ++ + Sbjct: 426 VNAPF-QAQDAELKPLEFWQQPVF---IANVLEIGRYLLLLLLAWLLWRLVVKPQLHKKR 481 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 + + L + + D A + R+N+ + Q Sbjct: 482 QAEKAAKMAAELKVKKDAEQAARQKIEQDEAA----------RQEQTRQRVNAEMHTQ-- 529 Query: 529 LRLLHMIEINEERFAKILRKWARSEI 554 RL M++ + A ++R W E+ Sbjct: 530 -RLREMVQKDPRVVAMVVRDWMSKEL 554 >gi|94314180|ref|YP_587389.1| flagellar MS-ring protein [Cupriavidus metallidurans CH34] gi|93358032|gb|ABF12120.1| flagellar MS-ring protein [Cupriavidus metallidurans CH34] Length = 563 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 111/565 (19%), Positives = 228/565 (40%), Gaps = 62/565 (10%) Query: 25 LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSIS 84 + + + +P Y LY L D + +L + N+ ++ ++ G ++ Sbjct: 25 MMLGGAALVAAIAVGVMWSRAPDYKVLYSNLSERDGGAVIQSLQQMNVPYKFAEGGGAVM 84 Query: 85 VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144 VP+ V + R+ LA+QGLP S + FG++ F +++ R LEGE+AR+I+ Sbjct: 85 VPADKVAETRLRLASQGLPKSGTTGME--LMDNQKFGISQFAEQVNYQRGLEGELARSIE 142 Query: 145 SISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNL 202 SI + +ARVH+ +P F + +PTASV+++ AI HLV+++VP L Sbjct: 143 SIGAVQSARVHLAIPKPTLFVRERQKPTASVVLQLYPGRAVDEGQVAAITHLVSSSVPEL 202 Query: 203 DMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAV 262 ++++D G LL+ +R++ L VQ ++ + LA LG DN + V Sbjct: 203 TPKSISIVDQQGNLLSGTN-DRSLDASQLKYVQQVEQGYVKRVESILAPILGKDNIHAQV 261 Query: 263 VAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPESAVT----------- 307 A+++ + + + Y P+ RS + S+ + T Sbjct: 262 TADVDFSSVEHTDESYKPNQDPTKAAIRSQQTSESNSQGGTPVGGVPGALSNQPPAAAAA 321 Query: 308 -----------------VEQNMPHVSDRKVP-LPRSLENTDKKEEQSNYEINTKSIATTH 349 + N P + + ++ + +++ +NYE++ Sbjct: 322 PVTTPQPPRQPGQPNPPAQANQPAQTTQTTQTAEKTGPSNSRRDSTTNYELDRVVRHVQQ 381 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 ++RLS+AVVVN + G+ + LA+I + A G ++ RGD++ + Sbjct: 382 AAGGVKRLSVAVVVNYRTKVDAKGKPVTEALSAKELAQIENLTKEAMGFSADRGDSLNVV 441 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 + F + + V V + T + L+ + + + F + R + Sbjct: 442 NSPFT-SDIKTEPEVPVWKQPQMIDLAKTGVGYLLLALLAVFLWFKVARPVLRKYTAPP- 499 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 + +P ++A L+P + +N ++ + +S + Sbjct: 500 ---------LPAPTETAAATEAVLLPPEE----ETNPEVLRLAAKYESDLAL-------- 538 Query: 530 RLLHMIEINEERFAKILRKWARSEI 554 + + + A +++ W ++ Sbjct: 539 -VRDAAQRDPRLVASVIKTWMANDE 562 >gi|119476321|ref|ZP_01616672.1| flagellar M-ring protein FliF [marine gamma proteobacterium HTCC2143] gi|119450185|gb|EAW31420.1| flagellar M-ring protein FliF [marine gamma proteobacterium HTCC2143] Length = 562 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 123/560 (21%), Positives = 243/560 (43%), Gaps = 38/560 (6%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 F ++G R L L + + + A + Y LY L+ D + L Sbjct: 19 DFLNGLGNIGILRQLFLMVGLAASVAMGGAIVLWSVGEEYRPLYSSLDHMDPGEVLNILQ 78 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 + ID ++ +N ++ V + + AR+ LA G+ S G+E+ DK G + FM+ Sbjct: 79 SSQIDHKVDENTGALLVAADQIHDARLKLAGAGISPDGS-FGFEMLDKEQPLGTSQFMES 137 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS--VYK 186 R LEGE+ RTI SI + ARVH+ +P +F + +PTASV + S + Sbjct: 138 ARFKRGLEGELGRTIASIQAVRGARVHLAIPKTSAFIRDVRKPTASVFLDLYGGSGINTE 197 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEMN 244 AI ++VA ++P L + +VTV+D G LL+ + +++ + K L V+ ++ + Sbjct: 198 QVRAIANMVAFSIPELTIQNVTVVDQRGNLLSNFDADQDMAMAHKQLDYVREMEGRLVKR 257 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE------ 298 ++ L LG NFR+ + A ++ + + +++PD RS + ++ + Sbjct: 258 VSSILEPVLGEGNFRAEISANVDFTQVEQTDELFNPDLPAIRSEQTVEEGRGGGGVGGVP 317 Query: 299 ---TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 ++QP + + D +T +++ NYE++ T H +L Sbjct: 318 GALSNQPPRDGQAPE---QIVDGGAAALAESVSTSRRQSVRNYELDRTISHTRHQVGRLR 374 Query: 356 RLSIAVVVNKGR-LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 RLS+AV+V+ + G S L ++ +V A G ++ RGD++ I + F Sbjct: 375 RLSVAVLVDNTTNIDSETGEIVSVAIEQSELDQLAILVRDAVGFDAARGDSVNIINSAFA 434 Query: 415 ---ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 ++ V + + R+ A F++ +L+ F+ A R L + + Sbjct: 435 VKEAPEVVPMEEVPIWQQPTIERYIKY---AGAFVLIMMLLFFVMRPAFRNLTDGSKELR 491 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFS-HSRNLQSRINSYVSKQSDLR 530 +++ S + ++ + L + S ++N + ++++ Sbjct: 492 ELEAQRALGDL----SGDLGSGLADETVTLSGGESLLLSGPNKNYEQQLST--------- 538 Query: 531 LLHMIEINEERFAKILRKWA 550 + +I + R A++++KW Sbjct: 539 VRGLIAEDPGRVAQVVKKWV 558 >gi|253688952|ref|YP_003018142.1| flagellar M-ring protein FliF [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755530|gb|ACT13606.1| flagellar M-ring protein FliF [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 574 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 117/555 (21%), Positives = 234/555 (42%), Gaps = 63/555 (11%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 + P Y LY + D I L++ NI +R +++G +I +P+ V + R+ LA Sbjct: 44 LTLWAKGPDYRVLYSNINDRDGGAIVGELTKLNIPYRFAESGGAIMIPAEKVYETRLRLA 103 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 GLP + G+EL D+ FG++ F ++I RALEGE++RTI+++ + ARVH+ + Sbjct: 104 QLGLPKGGA-VGFELLDQE-KFGISQFSEQINYQRALEGELSRTIETLGPVQNARVHLAI 161 Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 P F + P++SV + +I ++V+++V L +VTV+D TG+L Sbjct: 162 PKPSLFVREQKAPSSSVTLTLQPGRALDEGQINSIVYMVSSSVAGLPPDNVTVVDQTGRL 221 Query: 217 LT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LT A R++ L ++ + I +A +G+ N + V A+++ ++ + Sbjct: 222 LTQAGGSGRDLNAAQLKYSNEVEAMYQRRIESIIAPMVGMGNVHAQVTAQIDFSAREQTD 281 Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE-------- 327 Y P+ +++ S+ +SE + V + + P + + Sbjct: 282 EQYQPNQPPDKAAVRSQQTSQSEQRGGPNVGGVPGALSNQPAPAPTAPIATQPNNANANA 341 Query: 328 ----------------------------NTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + + + +NYE++ + T H ++RLS Sbjct: 342 NNQAGQQNQNNAAGAQANAANANTAIQTSNIRNDATTNYEVDKTILHTKHSTGGVKRLSA 401 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AV+VN G+ + + +I + A G ++ RGDT+ + + F+++ Sbjct: 402 AVIVNYQP-PGEDGKPV--ALTEEQIKQIETVAREAMGFSAERGDTLNVVNTPFMDS--- 455 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 G+ ++ F + F ++ A +L+ ++ L +R ++ Sbjct: 456 TDGSGELPFWQKQA-FFDLLMEAGRWLLVLIVAWILWRKLVRPQLQRKAQQQE------- 507 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 + A DN + + + R Q R+N+ + R+ M E + Sbjct: 508 -----AALAAAALSQGADNDVMVNLSSSEVEQQRKSQQRVNAEMQS---NRIREMAENDP 559 Query: 540 ERFAKILRKWARSEI 554 A ++R+W +E+ Sbjct: 560 RVVALVIRQWMSTEL 574 >gi|21231374|ref|NP_637291.1| flagellar MS-ring protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768573|ref|YP_243335.1| flagellar MS-ring protein [Xanthomonas campestris pv. campestris str. 8004] gi|188991617|ref|YP_001903627.1| flagellar MS-ring protein [Xanthomonas campestris pv. campestris str. B100] gi|21113037|gb|AAM41215.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573905|gb|AAY49315.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004] gi|167733377|emb|CAP51578.1| Flagellar biosynthesis lipoprotein FliF [Xanthomonas campestris pv. campestris] Length = 573 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 116/565 (20%), Positives = 229/565 (40%), Gaps = 23/565 (4%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ Q+F S+ TR L + ++I + + +A F+ P Y LY L+ + Sbjct: 15 EKAGQWFDRIRSMQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQALYTGLDDKGNAEAA 74 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L A I F+I + +ISVP + AR+ LA GL + G+EL +K FG++ Sbjct: 75 DLLRTAQIPFKIDQSTGAISVPQDRLYDARLKLAGSGLTGQQTGGGFELMEKDPGFGVSQ 134 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 F++ ALE E++RTI ++ + ARVH+ +P +F + +ASV++ Sbjct: 135 FVENARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQG 194 Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240 + +AI +LVA+++P++ VTV+D +G++L+ + + V+ + Sbjct: 195 LERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESS 254 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I + L G V +++ + +Y+ + RS ++S + + Sbjct: 255 YNQRIRELLEPMTGAGRVNPEVSVDMDFSVVEEARELYNGEPAKLRSEQVSDSSTSATGP 314 Query: 301 QPESAVTVEQ-----------NMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 Q T P + K NYE++ T Sbjct: 315 QGPPGATSNSPGQPPAPAATAGAPGAPAAGQAATPAAPTESSKSATRNYELDRTLQHTRQ 374 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 +++R+S+AV+++ G+ +Q + L I +V A G ++ RGDT+++ Sbjct: 375 PAGRIKRVSVAVLLDNVPRPGAKGKIVEQPLTAAELTRIEGLVKQAVGFDAARGDTVSVM 434 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 + F+ + + V N L LVG ++V L +R Sbjct: 435 NAPFVREAVAGEEGPKWWEDP-------RVQNGLRLLVGAVVVLALLFGVVRPTLRQLTG 487 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 + ++ D+ + +D ++ + I + + + Sbjct: 488 TAAVKEKHKKGGNDGTPQSADVRMVDEDDDLMPRLEEDTAQIGQDKKLPIALPDAYEERV 547 Query: 530 RL-LHMIEINEERFAKILRKWARSE 553 RL ++ + +R A++++ W SE Sbjct: 548 RLAREAVKADSKRVAQVVKGWVASE 572 >gi|82702474|ref|YP_412040.1| flagellar MS-ring protein [Nitrosospira multiformis ATCC 25196] gi|82410539|gb|ABB74648.1| flagellar M-ring protein FliF [Nitrosospira multiformis ATCC 25196] Length = 567 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 118/558 (21%), Positives = 225/558 (40%), Gaps = 50/558 (8%) Query: 14 GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73 T L + + L + + L A + P Y L+ + D I +L + N+ Sbjct: 37 LTRLSSQQKIGLMLTVSSLVALLAAGWMWTQGPDYKVLFSNVSDGDGGAIIASLQQMNVP 96 Query: 74 FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 ++ ++ G +I VPSS V R+ LA+QGLP G+EL + FG + F++++ R Sbjct: 97 YKFAEGGGAILVPSSQVHDTRLKLASQGLPRGGL-VGFELME-NQKFGTSQFLEQVNFQR 154 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEAI 191 ALEGE+AR++Q+++ + +ARVH+ +P F + +P+ASV++ + AI Sbjct: 155 ALEGELARSVQALAAVDSARVHLAIPKQSVFMREQQKPSASVLVNLYPGRTLDPQQVNAI 214 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAIQHEIEMNINKA 248 HLV+++VPNL + +VTV+D G LLT + + L + A++ I Sbjct: 215 VHLVSSSVPNLHVKNVTVVDQQGDLLTRIDESNPNTGLDPAQLKYLHALEQSYIKRIEAI 274 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308 L +G +N R+ V AE++ + Y P+ S S+ + S ++ V Sbjct: 275 LIPIVGQENVRAQVAAEVDFAHSEQTSETYRPNQDPAGSTIRSQQSSESTNVGTQNEGGV 334 Query: 309 EQNMPHVSD--------------RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 + + P ++ +K+ NYE++ + Sbjct: 335 PGALSNQPPVPATAPVTTPPAPPGATASPSRAPSSTRKDATINYEVDKTIQHVRKPVGGI 394 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 +RLS+AVVVN R+ + G + + + ++I +V A G + RGDT+ + + F Sbjct: 395 KRLSVAVVVNHRRVVDENGVVSAKPLSEVEKSQITDLVKEAVGFSRERGDTLNVVNSHFT 454 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNIDDAKKGE 473 + + + + + + L+ L + L L+R+ + E Sbjct: 455 GVEREAAPELPLWKQPEVVELAQQIGKTLLIGGLILYLVLGVLRPSLKRISQPEPPLLAE 514 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 ++ L+ +Q Sbjct: 515 ----------------------------PRNDDQDVQPVPALKPAAQPSEYEQRLTLARQ 546 Query: 534 MIEINEERFAKILRKWAR 551 + + + A ++++W Sbjct: 547 LAKKEPKLVANVVKQWVA 564 >gi|227329938|ref|ZP_03833962.1| flagellar MS-ring protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 574 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 118/555 (21%), Positives = 235/555 (42%), Gaps = 63/555 (11%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 + P Y LY + D I L++ NI +R ++NG +I +P++ V + R+ LA Sbjct: 44 LTLWAKGPDYRVLYSNINDRDGGAIVSELTKLNIPYRFAENGGAIMIPAANVYETRLRLA 103 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 GLP + G+EL D+ FG++ F ++I RALEGE++RTI+++ + ARVH+ + Sbjct: 104 QLGLPKGGA-VGFELLDQE-KFGISQFSEQINYQRALEGELSRTIETLGPVQNARVHLAI 161 Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 P F + P++SV + +I ++V+++V L +VTV+D TG+L Sbjct: 162 PKPSLFVREQKAPSSSVTLTLQPGRALDEGQINSIVYMVSSSVAGLPPDNVTVVDQTGRL 221 Query: 217 LT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LT A R++ L ++ + I +A +G+ N + V A+++ ++ + Sbjct: 222 LTQAGGSGRDLNAAQLKYSNEVEAMYQRRIESIIAPMVGMGNVHAQVTAQIDFSAREQTD 281 Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRS---------- 325 Y P+ +++ S+ +SE + V + + P + Sbjct: 282 EQYQPNQPPDKAAVRSQQTSQSEQRGGPNVGGVPGALTNQPAPAPTAPIATPPNNANANA 341 Query: 326 --------------------------LENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + + + +NYE++ + T H + ++RLS Sbjct: 342 NNQAGQQNQNNAAGAQANAANANTVIQTSNVRNDATTNYEVDKTILHTKHSSGGVKRLSA 401 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AV+VN G+ + + +I + A G ++ RGDT+ + + F+++ Sbjct: 402 AVIVNYQP-PGEDGKPV--ALTEEQIKQIETVAREAMGFSAERGDTLNVVNTPFMDS--- 455 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 G+ ++ F + F ++ A +L+ ++ L +R ++ Sbjct: 456 TDGSGELPFWQKQA-FFDLLMEAGRWLLVLIVAWILWRKLVRPQLQRKAQQQE------- 507 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 + A DN + + + R Q R+N+ + R+ M E + Sbjct: 508 -----AALAAAALSQGADNDVMVNLSSSEVEQQRKSQQRVNAEMQS---NRIREMAENDP 559 Query: 540 ERFAKILRKWARSEI 554 A ++R+W +E+ Sbjct: 560 RVVALVIRQWMSTEL 574 >gi|320354317|ref|YP_004195656.1| flagellar M-ring protein FliF [Desulfobulbus propionicus DSM 2032] gi|320122819|gb|ADW18365.1| flagellar M-ring protein FliF [Desulfobulbus propionicus DSM 2032] Length = 550 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 131/538 (24%), Positives = 239/538 (44%), Gaps = 25/538 (4%) Query: 21 RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80 R + LA+V + + LF + Y LY L SD + + L NI +++++NG Sbjct: 30 RKIALAAVTAITLGLFAFIIVQARTADYQLLYGNLAESDASSVVEWLKGQNIPYKLANNG 89 Query: 81 SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140 +I +P+ V + R+ LA+ GLP G+E+FDK SF LT F+Q++ RAL+GE+A Sbjct: 90 HNILIPAKDVYETRLSLASLGLPQGGG-VGFEIFDK-QSFALTDFVQKVNYSRALQGELA 147 Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAA 198 RTI S+ + ARVH+ +P+ F+ TASV+I+ E + HLV+++ Sbjct: 148 RTIASLGPVETARVHLALPEKRLFKDQQKPATASVIIKLAPGKRLSEAQIEGVVHLVSSS 207 Query: 199 VPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255 + LD G VTV+D G +L+ + N+ L ++ +E L LG Sbjct: 208 IEGLDPGQVTVIDQNGNVLSRIGEKGLSGNLSPDMLEFQMQVEQRLEDRAQALLDKSLGA 267 Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV 315 N V A L+ + E +DP+ V RS +LS++ SE + V+ N+ Sbjct: 268 KNAMVRVSATLDFAQTEKTEETFDPEEPVIRSEQLSEEKSGSEIT--GGVPGVQSNLEG- 324 Query: 316 SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS 375 + + + + +NYEI+ TT + +LS++V+V + Sbjct: 325 --NTAQTAGATPPSSRSQRTTNYEISKVVSKTTQPVGTISKLSVSVLVADKVVPGKDKEP 382 Query: 376 A-DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSR 434 A + + ++ L + +V++A GI++ RGD I +TSM FLE+ Q L Sbjct: 383 AKTEPRSETELKTLQTMVASALGIDTARGDKIEVTSMPFLESAEDGG---QEGMAANLLY 439 Query: 435 HFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLM 494 + I + ++G +L+ + L + + D + + + + Sbjct: 440 QYLPFIRYGLLILGAVLIYLFMIRPLMKTLHRDVTEH-------YKTVEEMEAEQVQAAA 492 Query: 495 PNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 + A + + + ++ ++ + ++ +E + A +L+ W Sbjct: 493 AREPGAGPAGAGALVGGAAYREAMESAPL--DPLEKIRKGVEQDPVFSAHVLKGWIHE 548 >gi|239817137|ref|YP_002946047.1| flagellar MS-ring protein [Variovorax paradoxus S110] gi|239803714|gb|ACS20781.1| flagellar M-ring protein FliF [Variovorax paradoxus S110] Length = 560 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 115/537 (21%), Positives = 210/537 (39%), Gaps = 46/537 (8%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 + +P Y LY + D I +L + N+ ++ ++ G +I V V + R+ LA+ Sbjct: 46 LLWSRAPDYGVLYTNVTDRDGGAIIASLQQMNVPYKFAEGGGAILVARDRVPEVRLKLAS 105 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 QGLP G+EL D FG ++F +++ R LEGE+AR+++SI + +AR+H+ +P Sbjct: 106 QGLPKGGG-VGFELMD-NQKFGTSNFAEQVNYQRGLEGELARSVESIGSVESARIHLALP 163 Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + +P+ASV++ AI H+V+++VP+LD VTV+D G LL Sbjct: 164 KPSLFVRDQKKPSASVILTLHRGRSIDEGQVSAIVHMVSSSVPDLDAKSVTVVDQRGNLL 223 Query: 218 TANEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 +A R + L Q I+ I L +G N R+ V AE++ + E Sbjct: 224 SAANAGARGLDVSQLKYAQEIEQGYIRRIEAILQPLVGASNVRAQVAAEIDFSVVERTEE 283 Query: 277 VYDPDSKVERSIRLSKDAQRS---ETSQPESAVTVEQNMPHVSDRKVPLPRSLE------ 327 Y P+ + S+ + S + P N P + Sbjct: 284 SYKPNQDPRAAAVRSQQSSESMQQGATPPGGVPGALSNQPPQTPSAPITAPPNAAAAAPK 343 Query: 328 ------------NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS 375 + +K+ +NYE++ ++RLS+AVVVN + G+ Sbjct: 344 AAATATAASTAPGSSRKDTTTNYELDRSIRHVQQGAGGVKRLSVAVVVNHRDTADSAGKP 403 Query: 376 ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435 + + + +I +V A G + RGD++ + + F + F + + Sbjct: 404 GQRALTPAEIEQIRNLVKEAMGFSQERGDSLNVVNSAFAREGGDAEAGPALPFWRDPA-N 462 Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495 ++ +L+ L F LR L A ++ + P + T Sbjct: 463 LGLAMSIAQYLLMAGLALFAWFAVLRPLLRKHLAPPAAAVPEAAPAAPGAADDDGTAAQN 522 Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 N + + ++ + + A +++ W S Sbjct: 523 NARLREIERQKADLDYAHQT-------------------ADQDPRLVATLIKHWMNS 560 >gi|183598654|ref|ZP_02960147.1| hypothetical protein PROSTU_02060 [Providencia stuartii ATCC 25827] gi|188020839|gb|EDU58879.1| hypothetical protein PROSTU_02060 [Providencia stuartii ATCC 25827] Length = 562 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 123/529 (23%), Positives = 241/529 (45%), Gaps = 37/529 (6%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 ++ SP Y L L D I L++ N+ ++I+DNGS+I VP+ V + R+ LA G Sbjct: 47 WLRSPDYRVLLSNLSAKDGGDIVSQLTQMNVPYQIADNGSAILVPAEKVHELRLKLAQSG 106 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP N+G+EL DK FG++ F +++ RALEGE++RTI+S+S + ARVH+ +P Sbjct: 107 LPKGG-NTGFELLDKEQ-FGISQFSEQVNYQRALEGELSRTIESLSPVQNARVHLAIPKP 164 Query: 162 GSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + PTASV + + + AI H+V+++V L +VT++D TG+LLT Sbjct: 165 TLFVREQKLPTASVTVGLLPGRMLDEGQITAIVHMVSSSVSGLTAANVTIVDQTGRLLTN 224 Query: 220 NE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 N+ +++ + + + ++ ++ I ++ +G N + V A+++ + Y Sbjct: 225 NDNSQQSANNAQIKMTKEMESHLKQRIEDIISPLVGRANVHAQVTAQMDFSKVEQTSEEY 284 Query: 279 DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT--------- 329 P+ + S+ +S + V + + P S +N Sbjct: 285 KPNQTPNSAAVRSRQNSQSSQNNTSGVGGVPGALSNQPPSAPSAPISTDNKGANSAQNSP 344 Query: 330 -------DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382 + +E +NYE++ K T ++RLS+AV++N G + Sbjct: 345 SNNGSSLSQSDETTNYEVDRKISHTQRQIGVIDRLSVAVIINYLPQDGEDGTQQMKPLSP 404 Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINA 442 + +I + A G +S RGD+++IT+ F + + Q S ++ + A V++ Sbjct: 405 EMMQQIESLTREAMGYSSTRGDSLSITNSLFTNDTVVEE---QPSMLEN-PQFIAQVLDY 460 Query: 443 LVFLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501 ++ ++ + ++ ++ + + ++ P + V + D Sbjct: 461 GKIILIAIIAWLMWRFGVKPQWVKYRQTQQAQSAAEVFVAAQPKTPLVVDEEINED---- 516 Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 D + R + R+++ + Q R+ M E + + A ++R+W Sbjct: 517 ----MDEQTRRRLTRQRVSAEIQSQ---RIREMAEKDPQVVAMVIRQWL 558 >gi|50120659|ref|YP_049826.1| flagellar MS-ring protein [Pectobacterium atrosepticum SCRI1043] gi|49611185|emb|CAG74631.1| flagellar M-ring protein [Pectobacterium atrosepticum SCRI1043] Length = 574 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 117/555 (21%), Positives = 235/555 (42%), Gaps = 63/555 (11%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 + P Y LY + D I L++ NI +R +++G +I +P++ V + R+ LA Sbjct: 44 LTLWAKGPDYRVLYSNINDRDGGAIVSELTKLNIPYRFAESGGAIMIPAANVYETRLRLA 103 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 GLP + G+EL D+ FG++ F ++I RALEGE++RTI+++ + ARVH+ + Sbjct: 104 QLGLPKGGA-VGFELLDQE-KFGISQFSEQINYQRALEGELSRTIETLGPVQNARVHLAI 161 Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 P F + P++SV + +I ++V+++V L +VTV+D TG+L Sbjct: 162 PKPSLFVREQKSPSSSVTLTLQPGRALDEGQINSIVYMVSSSVAGLPPDNVTVVDQTGRL 221 Query: 217 LT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LT A R++ L ++ + I +A +G+ N + V A+++ ++ + Sbjct: 222 LTQAGGSGRDLNAAQLKYSNEVEAMYQRRIESIIAPMVGMGNVHAQVTAQIDFSAREQTD 281 Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRS---------- 325 Y P+ +++ S+ +SE + V + + P + Sbjct: 282 EQYQPNQPPDKAAVRSQQTSQSEQKGGPNVGGVPGALTNQPAPAPTAPIATPPNNANANA 341 Query: 326 --------------------------LENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + + + +NYE++ + T H ++RLS Sbjct: 342 NNQAGQQNQNNAAGAQANAANTNTTIQTSNVRNDATTNYEVDKTILHTKHSTGGVKRLSA 401 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 A++VN G+ + + +I + A G ++ RGDT+ + + F+++ Sbjct: 402 AIIVNYQP-PGEDGKPV--ALTEDQIKQIETVAREAMGFSAERGDTLNVVNTPFMDS--- 455 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 G+ ++ F + F ++ A +L+ ++ L +R ++ + Sbjct: 456 TDGSGELPFWQKQA-FFDLLMEAGRWLLVLIVAWILWRKLVRPQLQKKAQQQEAALAAAT 514 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 LS DN + + + R Q R+N+ + R+ M E + Sbjct: 515 LS------------QGTDNDVMVNLSSSEVEQQRKSQQRVNAEMQS---NRIREMAENDP 559 Query: 540 ERFAKILRKWARSEI 554 A ++R+W +E+ Sbjct: 560 RVVALVIRQWMSTEL 574 >gi|295097226|emb|CBK86316.1| flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 511 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 138/548 (25%), Positives = 233/548 (42%), Gaps = 68/548 (12%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 F+ P Y L+ + D I LS+ N+ +RI G +I VP V + R+ LA Sbjct: 1 MFWAKEPGYRVLFSNISDEDGGAIVAQLSQMNVPYRIDAPGGAILVPEGQVHEVRMKLAQ 60 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 QGLP S G+EL DK FG++ F +++ RALEGE+ARTI+++ I +ARVH+ P Sbjct: 61 QGLPKGGS-VGFELLDKE-KFGISQFSEQVNYQRALEGELARTIENLGPIRSARVHLATP 118 Query: 160 DMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + +PTASV + I + AI HL+++AV L +VT++D G+LL Sbjct: 119 KQTMFVREQKQPTASVTVNLIQGRTLDEGQVIAITHLISSAVTGLTAENVTIVDQRGELL 178 Query: 218 TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 T + + R + L I+ + + I + LA +G N R+ V A+++ Q+ + Sbjct: 179 TQSGL-RGLQTSQLKYTSEIESDYQQRIQRILAPLVGSKNIRAQVTAQIDFTQQEQTQEQ 237 Query: 278 Y----DPDSKVERSIRLSKDAQRSE----------TSQPESAVTVEQNMP------HVSD 317 Y DP V RS + S+ Q + T+QP + T P S Sbjct: 238 YQPNADPQKMVIRSRQTSQSEQGNGRGNGGVPGALTNQPPAPATAPLTQPLDKPAAQTST 297 Query: 318 RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSAD 377 RS + +E +N+E++ + +++RLS+AVV+N Sbjct: 298 AGTGNDRSQPYNNHNDETTNFEVDRTLTHIKNAMGRIDRLSVAVVINHLPQG---AEGKP 354 Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437 ++ L IN +V A G + RGD++ I + F N + D + Sbjct: 355 GPLSEAELNRINALVKEAVGYTASRGDSVNILNSPF--NGVEEEELPPFWKQDKFYQLMM 412 Query: 438 TVINALVFLVGTLLVTFLGLHA---------LRRLHNIDDAKKGEVGGKSILSPPPISSA 488 + LV + ++ +H LRR+ +A++ E+ + S Sbjct: 413 AIARYLVIAIIAWVMWRKLVHPAWIRHQETSLRRMEMEKEARQEELAARKKASEKDARDR 472 Query: 489 VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRK 548 Q R+++ ++ Q +L + E A ++R+ Sbjct: 473 A--------------------------QQRVDTELNSQ---QLRELAEQEPRVIALVIRQ 503 Query: 549 WARSEIED 556 W E++ Sbjct: 504 WMNQELKS 511 >gi|227112541|ref|ZP_03826197.1| flagellar MS-ring protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 574 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 118/555 (21%), Positives = 236/555 (42%), Gaps = 63/555 (11%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 + P Y LY + D I L++ NI +R ++NG +I +P++ V + R+ LA Sbjct: 44 LTLWAKGPDYRVLYSNINDRDGGAIVGELTKLNIPYRFAENGGAIMIPAANVYETRLRLA 103 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 GLP + G+EL D+ FG++ F ++I RALEGE++RTI+++ + ARVH+ + Sbjct: 104 QLGLPKGGA-VGFELLDQE-KFGISQFSEQINYQRALEGELSRTIETLGPVQNARVHLAI 161 Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 P F + P++SV + +I ++V+++V L +VTV+D TG+L Sbjct: 162 PKPSLFVREQKAPSSSVTLTLQPGRALDEGQINSIVYMVSSSVAGLPPDNVTVVDQTGRL 221 Query: 217 LT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LT A R++ L ++ + I +A +G+ N + V A+++ ++ + Sbjct: 222 LTQAGGSGRDLNAAQLKYSNEVEAMYQRRIESIIAPMVGMGNVHAQVTAQIDFSAREQTD 281 Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE-------- 327 Y P+ +++ S+ +SE + V + + P + + Sbjct: 282 EQYQPNQPPDKAAVRSQQTSQSEQRGGPNVGGVPGALTNQPAPAPTAPIATQPNNANANA 341 Query: 328 ----------------------------NTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + + + +NYE++ + T H ++RLS Sbjct: 342 NNQAGQQNQNNAAGAQANAANANTVIQTSNVRNDATTNYEVDKTILHTKHSTGGVKRLSA 401 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AV+VN G+ + + +I + A G ++ RGDT+ + + F+++ Sbjct: 402 AVIVNYQP-PGEDGKPV--ALTEEQIKQIETVAREAMGFSAERGDTLNVVNTPFMDS--- 455 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 G+ ++ F + F ++ A +L+ ++ L +R ++ + Sbjct: 456 TDGSGELPFWQKQA-FFDLLMEAGRWLLVLIVAWILWRKLVRPQLQRKTQQQEAALAAAA 514 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 LS D+ + + + R Q R+N+ + R+ M E + Sbjct: 515 LS------------QGADSDVMVNLSSSEVEQQRKSQQRVNAEMQS---NRIREMAENDP 559 Query: 540 ERFAKILRKWARSEI 554 A ++R+W +E+ Sbjct: 560 RVVALVIRQWMSTEL 574 >gi|253990094|ref|YP_003041450.1| flagellar MS-ring protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781544|emb|CAQ84707.1| flagellar basal-body m-ring protein [Photorhabdus asymbiotica] Length = 567 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 139/583 (23%), Positives = 248/583 (42%), Gaps = 56/583 (9%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 I +Q F + + L I + +A ++ SP Y LY L D Sbjct: 8 IENQTNGFSTIINRIKADPKVPLLVAGSAAIAIVIALFLWLRSPDYRVLYSNLSDKDGGE 67 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L++ NI +R ++NGS+I +P+ V + R+ LA QGLP + +G+EL DK FG+ Sbjct: 68 IVTQLTQLNIPYRFAENGSAIMIPAGQVHETRLRLAQQGLPKGGA-AGFELLDKE-KFGI 125 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 + F +++ RALEGE++RTI+S+ + ARVH+ +P F + P+ASV + + Sbjct: 126 SQFSEQVNYQRALEGELSRTIESLGPVQNARVHLALPKPSLFVREQKSPSASVTVGLLQG 185 Query: 183 SVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQAIQH 239 AI H+V+++V L +VT++D G+LLT + R++ L +Q +++ Sbjct: 186 RTLDEGQINAIVHMVSSSVAGLPPSNVTIVDQAGRLLTQADATGRDLNTSQLKYIQEVEN 245 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK----VERSIRLSKDAQ 295 + I L +G N + V A+++ ++ Y P+ RS +LS+ Q Sbjct: 246 RFQQRIEAILTPVVGRGNVHAQVTAQVDFSRREETAEEYKPNQPPNQAAVRSKQLSESEQ 305 Query: 296 RSE----------TSQPESAVTVEQNMPHV-----SDRKVPLPRSLENTDKK-------- 332 ++QP + P+ SD+ S N++++ Sbjct: 306 SGGPLVGGIPGALSNQPSPPPSAPIEKPNTKESNKSDKSDKKTSSSGNSNERMVNNNRNN 365 Query: 333 --EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINK 390 +E +NYE++ +ERLS+AVVVN + G Q LA+I Sbjct: 366 RRDETTNYEVDRTIRHVQQQAGGVERLSVAVVVNYVTVEGKNGPET-QALTPEQLAKIEA 424 Query: 391 IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL 450 + A G + RGD++ + + F E++ N + V IL +L+ L Sbjct: 425 LTREAMGFSKERGDSLNVVNTPFTESK-ENIEVIPVWQNPILLEKAFDF---GRYLLLIL 480 Query: 451 LVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFS 510 + L + A + + + S+ D + Sbjct: 481 VAWLLWRKMVVPQLAKKRAAEKAALEAQKAQKKQATES--------------SAEMDERT 526 Query: 511 HSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 R + R+++ + Q R+ + E + A ++R+W +E Sbjct: 527 RQRLTRQRVSAEIQSQ---RIRELAEKDPRVVALVIRQWMSNE 566 >gi|92114078|ref|YP_574006.1| flagellar M-ring protein FliF [Chromohalobacter salexigens DSM 3043] gi|91797168|gb|ABE59307.1| flagellar M-ring protein FliF [Chromohalobacter salexigens DSM 3043] Length = 594 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 127/550 (23%), Positives = 211/550 (38%), Gaps = 47/550 (8%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 + +P Y LY L +D +I L + + S+NG ++ VP+ V K R+ LA Sbjct: 54 LLMWARAPEYRVLYSTLTDADGGKIVSELDSMGVPYEFSENGQALLVPADQVNKLRLQLA 113 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 QGLP +S GYEL D+ SFG++ F + + RALEGE+ARTI+ + + ARVH+ M Sbjct: 114 EQGLPEASG-VGYELMDE-QSFGISQFTEHVNYQRALEGELARTIEDLGPVSKARVHLAM 171 Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 F + +ASVM+ V +AI H+V+++V L + DV V+D TG+L Sbjct: 172 AKPSVFVRESEPASASVMLDLQRGRVLGEGQVQAIMHMVSSSVSELAISDVAVVDQTGRL 231 Query: 217 LT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 L+ A++ + G L V ++ I LA LG N ++ V A+L+ ++ Sbjct: 232 LSPASDGNEALNGSQLDYVARVERNYAERIESILAPILGARNVKAEVSAQLDFSEREGTS 291 Query: 276 IVYDPDSKVERSIRLSKDAQRSET--------------SQPESAVTVEQNMPHVSDRKVP 321 Y P+ + S+ S + +QP N P D Sbjct: 292 ETYGPNQPPNEAAVRSEQTSLSYSGDGDLAMGIPGALSNQPPGTAASPINAPQEDDAGDG 351 Query: 322 LPRSLE-------------------NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 + ++ NYE++ H+ +ERL+ A+V Sbjct: 352 EGEDAQDDGNQDEDGEATTQENATLGRTSRDNTINYEVDRTVEHIQHETGTIERLNAAIV 411 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 VN + G D +A I + A G + RGD + + + F + Sbjct: 412 VNYRDGVDEDGNPTRVPLSDQEIANIRSLAQQAIGFSQARGDQLEVVNSPFDDTS--EQR 469 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482 + L AT + +L+ L+ FL LR L + + + Sbjct: 470 PEPAWWESPLLWSLATTLG--QYLLIGLVALFLWFKVLRPLIQRQTERPAFTPATAAPAG 527 Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542 + A + + Q+ + + + + Sbjct: 528 AAGGAEAYAATAAEGTGAEEEPPAPPQKRRERRSASYE-----QNLRDVREIAQEDPRLV 582 Query: 543 AKILRKWARS 552 A I+R W S Sbjct: 583 AMIVRGWMSS 592 >gi|187478210|ref|YP_786234.1| flagellar MS-ring protein [Bordetella avium 197N] gi|115422796|emb|CAJ49324.1| flagellar M-ring protein [Bordetella avium 197N] Length = 544 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 123/536 (22%), Positives = 221/536 (41%), Gaps = 61/536 (11%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + P Y L+ L+ D I AL++ N+ +R SDNG +I VP + V R+ LA QG Sbjct: 46 WSREPDYKVLFSNLDDRDGGAIVTALTQMNVPYRFSDNGGAILVPGNRVYDLRMQLAGQG 105 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG + F +++ RALEGE+AR+I+++ + ARVH+ +P Sbjct: 106 LPRGGS-VGFELMDNA-RFGASQFAEQVNYQRALEGELARSIEAMHTVQHARVHLALPRQ 163 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + PT SV++ A+ AI LVA++VP+L +V+++D G+LL+A Sbjct: 164 SLFVRDRQPPTGSVLLTLYPGRSLAEAQVSAIAWLVASSVPDLSADNVSIVDQNGRLLSA 223 Query: 220 NEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 E R + + + + I L +G N + E++ ++ +Y Sbjct: 224 PAGEGRGLDADQMRFAREYEQRTVERILTILNPLVGPGNVHAQASVEVDFARREETSEIY 283 Query: 279 DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSL------------ 326 P+ + ++ S+ S + A V + + P + Sbjct: 284 RPNQEPGQAAVRSQQTSDSRQTNASPAAGVPGALSNQPPAATQAPLTNPPAPAQPQAQPA 343 Query: 327 --------ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ 378 ++++ NYE++ +++RLS+AVVVN + Q Sbjct: 344 APQQAAQISGNERRDATINYEVDRTISHVKQPVGQVKRLSVAVVVNHLPNKDGD----PQ 399 Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFAT 438 L+++ +V A G + RGD++ + + F + TV + L AT Sbjct: 400 ALPPEELSKLTTLVREAMGYSEARGDSLNLVNSQFNDA----PPTVPLWRDPDL---IAT 452 Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498 + AL ++ G LL+ F +R + S + + Sbjct: 453 IKTALGWVFG-LLIAFWAYRRIRPIV----------------------SEYLYPQIDPEA 489 Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 +A + + + + + +N Y + + R M + A +LR W + Sbjct: 490 VAAERAEIEREAVAAARAKEVNRY--EDNLQRARDMATKDPRAVAMVLRAWMTKDE 543 >gi|254496581|ref|ZP_05109449.1| flagellar MS-ring protein [Legionella drancourtii LLAP12] gi|254354205|gb|EET12872.1| flagellar MS-ring protein [Legionella drancourtii LLAP12] Length = 547 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 130/573 (22%), Positives = 247/573 (43%), Gaps = 52/573 (9%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 MA+ D SL R + L + + + +A + P+Y LY ++ D Sbjct: 1 MALADNASMVAAKFASLSIPRQIGLLIGLAASVAVGLAVVLWSRDPNYVPLYTQMNTRDA 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 + AL I+F+I +N S+I +PS+ + R+ LAA+GLP S ELF N+F Sbjct: 61 AEVVSALERNGIEFKIDNNNSTILIPSANLQSTRLKLAAEGLPRDPVAS-EELFSSGNAF 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 + FM+ +ALE E+ARTI + I AARVH+ +P +F + +P+ASV I Sbjct: 120 NSSQFMENARYKQALEAELARTISKFNDIKAARVHLAIPRESAFVRDIHQPSASVFIDVY 179 Query: 181 NPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS--LSIVQA 236 + K + AI +LVA+++PNL VTV+D G+LL + L Q Sbjct: 180 SGLELKKHTVSAIVNLVASSIPNLSASRVTVVDQDGQLLNEGSGQTLFTDTERFLDYRQN 239 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 ++ + I L LG R+ V A+++ + + + +++P+ RS + ++ Sbjct: 240 LEQQYAQKIQDILTPLLGYGRVRAKVSADIDFTSYEQTQEMFNPELPSLRSEQTMQEKHN 299 Query: 297 SETSQPESAVTVEQNMPHVSDR------------------KVPLPRSLENTDKKEEQSNY 338 + S N P + + + + + + N+ Sbjct: 300 AA-SDAIGVPGTLSNTPQPNPSLNNKNPAAPNAQQQQQPAQSSSDANQSSDTRTQSTKNF 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA-DQGKIDSYLAEINKIVSAATG 397 E++ T + ++RLS+AV+V+ + + ++ + + +I +V+ A G Sbjct: 359 ELDKTISHTKNQPGTIKRLSVAVLVDNPAIMDTKTKTMIKKALTAKEIDQIKLLVADAIG 418 Query: 398 INSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457 +NS+RGD++ + + DF++ + + F F +++ + G L V + Sbjct: 419 LNSQRGDSLNVINSDFVKPDPI-APIPEERFWQ--KDIFWSIVKQVA---GALFVLAMIF 472 Query: 458 HALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS 517 LR + + KG G + + L + IA+ +N + +S Sbjct: 473 GVLRPMLKTLASNKGVGEGAYLED----TDEPQGDLTYDGTIAIKDAN--------DYES 520 Query: 518 RINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 ++N L +++ +R A++++ W Sbjct: 521 QLNL---------LRQVVDKEPKRVAQVVKTWV 544 >gi|313200543|ref|YP_004039201.1| flagellar m-ring protein flif [Methylovorus sp. MP688] gi|312439859|gb|ADQ83965.1| flagellar M-ring protein FliF [Methylovorus sp. MP688] Length = 580 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 128/548 (23%), Positives = 227/548 (41%), Gaps = 50/548 (9%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 + P Y L+ D I +L + NI ++ S++G++I VP+S V + R+ LAA Sbjct: 49 WLWSQQPEYRVLFSNYADKDGGAIVASLEQMNIPYKFSESGTAILVPASQVHQVRLKLAA 108 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 QGLP N G+EL + FG++ F++++ R LEGE+ R+IQ+IS + AR+H+ +P Sbjct: 109 QGLPKGG-NIGFELLE-NQKFGVSQFVEQVNFQRGLEGELERSIQTISAVEVARIHLAIP 166 Query: 160 DMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + +PTASV++ + + AI HLVA++VP L + +VTV+D G LL Sbjct: 167 KPSVFVRDQQKPTASVLLNLRPGRMLDQQQVSAIVHLVASSVPELPIANVTVVDQNGNLL 226 Query: 218 TANE---MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 + + N+ L + +Q I + +A +G N + AE++ TQ+ Sbjct: 227 SDTDKKAGRNNLDPTQLKYIDELQQNIVRRVESIIAPMVGAKNVHAEASAEVDFSTQEQA 286 Query: 275 EIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPHVS-----DRKVPLPRSL 326 Y P+ + S+ + S+++ P V N P + VP Sbjct: 287 AETYRPNQAPDAMSVRSQQSNESQSTSPAGVGGVPGALSNQPPAPATAPLNTAVPANAGA 346 Query: 327 EN---------------------TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365 +K +NYE++ ++RL++AVVVN Sbjct: 347 PGAGTPANAAAANAANATPAVPVNTQKNVTTNYELDKTIRYVQQPMGGVKRLTVAVVVNH 406 Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425 ++ + G+ ++ D+ EI+ + A G N RGD++T+ + F +Q+ + Sbjct: 407 KQVVDKNGKVTNRPLTDAEKTEISDLAKQAMGFNQERGDSLTVVNSSFAGDQIEAIPDLP 466 Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485 + + L G LLV FL L + K E Sbjct: 467 LWKQP---ENIEMAKEWLKMAAG-LLVIFLLYRKLMKPMMQKLVKSDEKEALPAPGDDDA 522 Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545 + TG + + ++ + +Q+ + + N + A + Sbjct: 523 AVVTLTGAAEGAE----------GENMVGVPRKLAAKGYEQNLEAAKQLAKENPKLVASL 572 Query: 546 LRKWARSE 553 + W E Sbjct: 573 VTNWVSKE 580 >gi|124265758|ref|YP_001019762.1| flagellar biosynthesis lipoprotein [Methylibium petroleiphilum PM1] gi|124258533|gb|ABM93527.1| flagellar biosynthesis lipoprotein [Methylibium petroleiphilum PM1] Length = 567 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 126/572 (22%), Positives = 232/572 (40%), Gaps = 51/572 (8%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 F +L R L + + + A + + +Y LY L D I LS Sbjct: 21 FGSRLAALPAGRKFTLGIGLAALVGIAFAMSMWSSQGNYKVLYAGLSDKDGGAILAQLST 80 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 N+ ++ +D G++I VP+ V R+ LA+ GLP S G+EL D FG T F + + Sbjct: 81 MNVPYKHADGGAAILVPADKVHDVRLKLASAGLPK-GSIVGFELMDNA-KFGQTQFQERL 138 Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--S 187 T R LEGE+ R+I +++ + +ARVH+ +P+ F + +P+ASV++ Sbjct: 139 TFQRGLEGELTRSIGALAAVQSARVHLALPNQNGFFREQQKPSASVLLTLHPGRTLDRTQ 198 Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMN 244 I HLV+++VP +D VTVLD+TG L++ + + + L V I+ Sbjct: 199 IAGIVHLVSSSVPEMDPKAVTVLDATGALISGAGDAGSAGGLDAQQLQYVGQIEGNYTKR 258 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV----------ERSIRLSKDA 294 + L LG DN R+ V AE++ + Y P+ + RS ++S +A Sbjct: 259 VFDILEPVLGRDNLRAQVTAEVDFSQTESTSEAYAPNQGLGADGKPAAATLRSHQVS-EA 317 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE-----------NTDKKEEQSNYEINTK 343 ++QP N P V + ++E +NYE++ Sbjct: 318 SGGGSAQPAGVPGAASNQPPVPATAPVNGSAQPLQTAQSGGGSGGNSRREATTNYEVDKT 377 Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403 T + ++RL+ AVV+N +T+ G+++ + ++ +V G N+ RG Sbjct: 378 VRVTRNATGTIKRLNAAVVLNHRSVTDAKGKTSTTPISAEEMEKLTALVKETIGFNADRG 437 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 D++ + + F + + + T+ + +++ F + Sbjct: 438 DSVKLINAPFKVEKPPVEEALPLWKQPETQDLLRTLAVPGALTLLAMIIVFGAVRP---- 493 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 ++ + P + +D AL S + + L++ + Sbjct: 494 --------------ALKAAQPAQPQRQLDAVVDDVPALPSPSSAQAAALPALEAPVVDTR 539 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 Q+ + + N A I+R W+ E Sbjct: 540 LNQA----RALAKENPAAMANIVRGWSAKEAA 567 >gi|46578729|ref|YP_009537.1| flagellar M-ring protein FliF [Desulfovibrio vulgaris str. Hildenborough] gi|46448141|gb|AAS94796.1| flagellar M-ring protein FliF [Desulfovibrio vulgaris str. Hildenborough] gi|311232601|gb|ADP85455.1| flagellar M-ring protein FliF [Desulfovibrio vulgaris RCH1] Length = 538 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 138/560 (24%), Positives = 247/560 (44%), Gaps = 38/560 (6%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 D+ F+ + R I+ LA LV + +F ++N P Y LY L D NR+ Sbjct: 10 DKARAFWSRISMSQRVFIVGLA---LVTVGIFFTLILWINRPDYRVLYSNLAGEDANRVV 66 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L + +++ ++G ++ VP+ + RI +A +G G+E+FD + G T Sbjct: 67 KLLQANKVPYKLENDGGTVLVPADKLYDLRIKVAGEG-NLVGQGIGFEIFDDL-KVGQTD 124 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP-- 182 F+Q+I RAL+GE+ RTI G+ ARVH+V+P F + +P+ASV+++ Sbjct: 125 FVQKINYQRALQGELIRTISEFPGVETARVHLVIPHRSLFIEEQQKPSASVVVKLREGKK 184 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQAIQH 239 + +AI +LV AV +D V+V D++GK+L T ++ + + L +Q Sbjct: 185 MEAQDVQAIVNLVVMAVEGMDRNRVSVADTSGKILYYPTEDDSLQGLTTTQLEYKMRLQQ 244 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 +E I + L +G + V A+++ + IR +YDP+ V RS + S+++ R Sbjct: 245 NLERRIEELLYPVIGPGKVIAKVNADVDFSQRTIRRELYDPEKTVVRSEQRSEESTRGRA 304 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + A + + S + ++ +N+EIN + + L RLS+ Sbjct: 305 NLEAGAPDA-----NFRGDGISGSASTQEGTRETRTTNFEINKEEQNIVANVGDLSRLSV 359 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AV+V+ G + + I ++VS+A G + RGDT+ + S+ F L Sbjct: 360 AVIVDGTYEKAADGTYTFVPRNAEEMQRIRQLVSSAVGYDRARGDTVEVNSISFGGPDLP 419 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 ++ F+D R ++NAL+ + LLV + AL R + + G Sbjct: 420 QEASLPQLFLDYALRLGKPLLNALLVFLFLLLVVRPVVMALIR----PKVEGEMIEGLEG 475 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 L A+ G D + +DI +H+ + E N Sbjct: 476 LPAGEERLALIEGDEEVDALDALRKIEDIKAHAM-------------------QLAEQNM 516 Query: 540 ERFAKILRKWARSEIEDRYT 559 ++ I+R W +++ + Sbjct: 517 DQAVGIIRSWLKNDEGTKAG 536 >gi|253998468|ref|YP_003050531.1| flagellar M-ring protein FliF [Methylovorus sp. SIP3-4] gi|253985147|gb|ACT50004.1| flagellar M-ring protein FliF [Methylovorus sp. SIP3-4] Length = 576 Score = 395 bits (1015), Expect = e-107, Method: Composition-based stats. Identities = 128/548 (23%), Positives = 226/548 (41%), Gaps = 50/548 (9%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 + P Y L+ D I +L + NI ++ S++G++I VP+S V + R+ LAA Sbjct: 45 WLWSQQPEYRVLFSNYADKDGGAIVASLEQMNIPYKFSESGTAILVPASQVHQVRLKLAA 104 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 QGLP N G+EL + FG++ F++++ R LEGE+ R+IQ+IS + AR+H+ +P Sbjct: 105 QGLPKGG-NIGFELLE-NQKFGVSQFVEQVNFQRGLEGELERSIQTISAVEVARIHLAIP 162 Query: 160 DMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + +PTASV++ + + AI HLVA++VP L + +VTV+D G LL Sbjct: 163 KPSVFVRDQQKPTASVLLNLRPGRMLDQQQVSAIVHLVASSVPELPIANVTVVDQNGNLL 222 Query: 218 TANE---MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 + + N+ L + +Q I + +A +G N + AE++ TQ+ Sbjct: 223 SDTDKKAGRNNLDPTQLKYIDELQQNIVRRVESIIAPMVGAKNVHAEASAEVDFSTQEQA 282 Query: 275 EIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPHVS-----DRKVPLPRSL 326 Y P+ + S+ + S+++ P V N P + VP Sbjct: 283 AETYRPNQAPDAMSVRSQQSNESQSTSPAGVGGVPGALSNQPPAPATAPLNTAVPANAGA 342 Query: 327 EN---------------------TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365 +K +NYE++ ++RL++AVVVN Sbjct: 343 PGAGTPANAAAANAANATPAVPVNTQKNVTTNYELDKTIRYVQQPMGGVKRLTVAVVVNH 402 Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425 ++ + G+ ++ D+ EI+ + A G N RGD++T+ + F Q+ + Sbjct: 403 KQVVDKNGKVTNRPLTDAEKTEISDLAKQAMGFNQERGDSLTVVNSSFAGEQIEAIPDLP 462 Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485 + + L G LLV FL L + K E Sbjct: 463 LWKQP---ENIEMAKEWLKMAAG-LLVIFLLYRKLMKPMMQKLVKSDEKEALPAPGDDDA 518 Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545 + TG + + ++ + +Q+ + + N + A + Sbjct: 519 AVVTLTGAAEGAE----------GENMVGVPRKLAAKGYEQNLEAAKQLAKENPKLVASL 568 Query: 546 LRKWARSE 553 + W E Sbjct: 569 VTNWVSKE 576 >gi|94987299|ref|YP_595232.1| flagellar biosynthesis/type III secretory pathway lipoprotein [Lawsonia intracellularis PHE/MN1-00] gi|94731548|emb|CAJ54911.1| Flagellar biosynthesis/type III secretory pathway lipoprotein [Lawsonia intracellularis PHE/MN1-00] Length = 554 Score = 395 bits (1015), Expect = e-107, Method: Composition-based stats. Identities = 139/560 (24%), Positives = 248/560 (44%), Gaps = 21/560 (3%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 I+ ++ +F+ + T+ L + + ++F+ F++N Y LY L D N Sbjct: 7 QIIARITEFWNNSN---LTQKLFIGGSAVFVTLIFIGLMFWINRTDYKVLYSNLGPEDAN 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L + ++++DNG +I VP+S V RI +A +G S G+E+FD VN G Sbjct: 64 HIIKTLQADKVSYQLADNGKTILVPASSVYDLRIKIAGEG-GMVGSGIGFEIFDAVN-VG 121 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 T F+Q I RAL+GE++RTI + +ARVH+V+P F + +P+ASV+++ N Sbjct: 122 QTDFVQRINYQRALQGELSRTISEFPNVESARVHLVIPQRSLFIEEQQKPSASVVLKLKN 181 Query: 182 PS---VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQA 236 PS K + + +++ AV LD V++ DS GK L + + Sbjct: 182 PSRKMDQKEVQGMVNMLVMAVEGLDKEHVSITDSLGKPLYFPNEDNLAGLSVTQREYKLK 241 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 ++ +E I++ L +G + V +L+ + + IR +YDP+S V RS + S++ R Sbjct: 242 VEQGLERRIDELLIPLMGQGKVIAKVNVDLDFNQKTIRREIYDPNSSVIRSEQRSEETNR 301 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 +++ + V + S + ++ +NYEIN + + ++ R Sbjct: 302 GQSNLESGSPDV-----NFRGDGPNGAMSTQEGTRETRTTNYEINREEQNIVGEVGQINR 356 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 +++AVVV+ + E G + L I +VS A G + RGDTI ++S+ F E Sbjct: 357 MTVAVVVDGTYVKEPNGEYKFVPRSQEELNRIRLLVSHAIGFDRARGDTIEVSSIPFDEA 416 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476 L R ++NAL+ + +LV + AL R K Sbjct: 417 DLPIEPPAAEVIAKYAERLGKPLLNALLAFLFLMLVVRPVILALIR------PKVESEAI 470 Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536 L P + + A ++ + + S + + + L + E Sbjct: 471 VEGLEGLPSAEEQLALYETQEEAAKAAAMEAVRIASEEEEEFESLKHLEDIKNYTLQLAE 530 Query: 537 INEERFAKILRKWARSEIED 556 N E+ +LR W + + + Sbjct: 531 NNIEQSILVLRGWMKDDTKT 550 >gi|170751440|ref|YP_001757700.1| flagellar MS-ring protein [Methylobacterium radiotolerans JCM 2831] gi|170657962|gb|ACB27017.1| flagellar M-ring protein FliF [Methylobacterium radiotolerans JCM 2831] Length = 525 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 135/532 (25%), Positives = 242/532 (45%), Gaps = 10/532 (1%) Query: 25 LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN-GSSI 83 +A+V L I F V+ P L+ L + D + L I + + G +I Sbjct: 1 MAAVTLTLIGFFAFIILRVSRPDMGVLFSDLSMQDSASVVRELDSRGIRYETRGDAGQTI 60 Query: 84 SVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTI 143 P + K R+ LA +GLP+ GYE+FDK ++F T+F+Q + +RALEGE+AR+I Sbjct: 61 LAPRPDLAKLRMDLAGKGLPTQGG-VGYEIFDKGDAFSSTNFVQNVNHLRALEGELARSI 119 Query: 144 QSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLD 203 ++I + AARVH+V+P+ F + P+A+++++ + AIRHLVA+AV L Sbjct: 120 RAIGRVQAARVHLVLPERRLFERDRESPSAAIVLKLMGDLDAGQVRAIRHLVASAVEGLK 179 Query: 204 MGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSA 261 ++++D G+LL + ++ A++ + I +A +G R Sbjct: 180 PERISIVDERGRLLADGARDAATDVASGFEDRQVALERRLRGQIEDVVAGIVGPGRARVQ 239 Query: 262 VVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVP 321 V AEL+++ + R +DP+S+V RS + ++ T E V+V +P + Sbjct: 240 VNAELDLNRVESRSETFDPESRVVRSAQTRTESAV--TGNAEGQVSVGNELPGA-NGGDK 296 Query: 322 LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI 381 P + T+K EE +NYEI+ + + +++RLS+AVV++ G+ + Sbjct: 297 APTPKDATNKNEETTNYEISRVTKTEIAEGGRIKRLSVAVVLDGVYAAAPDGKQTYSPRT 356 Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441 + + I +V A G + RGD I + ++ F E T +L+ V+ Sbjct: 357 PAEIERITALVRGAVGFDKARGDQIEVVNLRFAEAPSVPQFTEPTLIESLLAPTKDDVLR 416 Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501 V LL + L +R L A E + A ++ + Sbjct: 417 MAELAVLALLTLIVLLTVVRPLVRQVLAPVPEAPALTASGLAIPGDAA---VVAGPGGTV 473 Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++D + ++IN V ++ R++ M+ + ++LR W + E Sbjct: 474 TVIDRDSPTARLMEFAKINGQVQAETVQRVVDMVRASPSETVEVLRTWIQEE 525 >gi|152997451|ref|YP_001342286.1| flagellar MS-ring protein [Marinomonas sp. MWYL1] gi|150838375|gb|ABR72351.1| flagellar M-ring protein FliF [Marinomonas sp. MWYL1] Length = 558 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 127/560 (22%), Positives = 232/560 (41%), Gaps = 33/560 (5%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L+ L R L L + I + +AA + N P Y + + + ++I L Sbjct: 15 LELVTGFNKLTVIRQLALMVGLAASIAIGLAAVLWSNGPDYKPVLSSITDYNADQIVEIL 74 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 S NI F++ N ++ V S +AR+ LA G+ S + G E+ D+ G + F++ Sbjct: 75 SVNNIPFKLDQNTGALLVESDFYHQARLKLAGSGIV-SDNIVGMEIMDQEQGLGTSQFVE 133 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 R LEGE++RTI S+ I +ARVH+ +P F + +P+ASV + Sbjct: 134 TTRYRRGLEGELSRTIASLQSIKSARVHLAIPKESVFVRDTRKPSASVFLELYPGRRLDK 193 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQAIQHEIEM 243 EAI +LVA+++ L DVTV+D G LLT + + ++ GK + ++ + Sbjct: 194 SQVEAIVNLVASSISQLSDKDVTVVDQRGTLLTEKDSDSELSVAGKQFDYARKVEEVLLQ 253 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE----- 298 +N L +G F++ V A+++ + Y+PD RS + ++ + + Sbjct: 254 RVNNILGPVIGQGRFKAEVSADVDFTAVEKTNEQYNPDLLALRSEQTLRENRSAGTSASG 313 Query: 299 -----TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 T+QP AVT+ + + + ++E N+E++ T Sbjct: 314 IPGALTNQPPGAVTIPEAVDENGAPIGGNTSAKNGQSREETTRNFELDRSISYTKRQQGM 373 Query: 354 LERLSIAVVVNK-GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 + RLS+AVVV+ L D L + +V A G + RGD++++ + Sbjct: 374 VRRLSVAVVVDDLMSLNPDTSAIVRTPWNDDELGRLTLLVRDAVGYDPSRGDSVSVINSP 433 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F +++ F + LV + +L+ + L+ L + Sbjct: 434 FALPD-PEEPAIELPFYQQAW-FLGLIQPTLVGIFVLILLLVVVRPILKTLSEQNKIAVT 491 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 E +I S T + +D ++L S+ + S R + Sbjct: 492 EDTEAAIFSD-------ETDEISDDQVSLVSAEDILVPGSPEKIDR--------QLNAIR 536 Query: 533 HMIEINEERFAKILRKWARS 552 +I ER A+++++W Sbjct: 537 GLIAEEPERVAQVVKQWVME 556 >gi|237653561|ref|YP_002889875.1| flagellar MS-ring protein [Thauera sp. MZ1T] gi|237624808|gb|ACR01498.1| flagellar M-ring protein FliF [Thauera sp. MZ1T] Length = 571 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 138/572 (24%), Positives = 239/572 (41%), Gaps = 45/572 (7%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 ++ Q ++ +L + + A I + I L + + +P Y L+ L+ D +I Sbjct: 24 RMQQALQNLAALSTRQKIAGAVAIALAIALVAGSLLWNRAPEYAVLFSNLDERDGGQIIA 83 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L + NI +R+S G +I VP + V + R+ LAA GLP S +G+EL D G++ F Sbjct: 84 ELQQRNIPYRMSPTGHAILVPQAQVHETRLRLAADGLPKGSL-AGFELMDG-QKLGISQF 141 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 +++ RALEGE+ RT+Q+I + +ARVH+ MP +F + RPTASVM+ + Sbjct: 142 NEQVNYQRALEGELTRTVQAIDAVASARVHLAMPKQTAFLRDDQRPTASVMVNLRGGRIL 201 Query: 186 --KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME---RNILGKSLSIVQAIQHE 240 I HLV+++VP + V ++D GKLLT + L V+ ++ Sbjct: 202 SPDQVAGIVHLVSSSVPRMHAEGVKIVDQNGKLLTEQADPLLRAGLDATQLEYVRLLEQG 261 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I+K LA +G N+ + V A+++ + + Y P+ +++IR S+ + Sbjct: 262 FIERIDKILAPLVGKGNYGAQVAADVDFNQVEQTAETYKPNPTPDQAIR-SQQTSEAFNP 320 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTD---------------KKEEQSNYEINTKSI 345 QP + Q +P + P+P + T+ + NYE++ Sbjct: 321 QPGA-----QGVPGALTNQPPVPATAPITNPQVAGGGGAQGLASGNRSAVLNYELDRNIQ 375 Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 +++RLS+AVVVN L G + D +A I +V A G N+ RGDT Sbjct: 376 HVKQAVGQIKRLSVAVVVNNRTLPGPDGTPTNVPLPDEEIARITNLVREAVGYNADRGDT 435 Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465 I + S F ++ + + +N L+ L+ L F + L R Sbjct: 436 INVASGAFADDG--SGAAPPPWKDPEIVALGKEGLNWLLVLIAILFAYFGVIRPLLR--- 490 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 +++ P P + + S + + Sbjct: 491 ------------TVVPPKPKEEKKGAAAGEEGGEGEEGEEGVRVTLSGETGEGEETETFE 538 Query: 526 QSDLRLLHMIEINEERFAKILRKWARSEIEDR 557 Q R + + A +++ W E R Sbjct: 539 QRLERARAAARNDPKMVANLIKDWMGMNEEAR 570 >gi|319787100|ref|YP_004146575.1| flagellar M-ring protein FliF [Pseudoxanthomonas suwonensis 11-1] gi|317465612|gb|ADV27344.1| flagellar M-ring protein FliF [Pseudoxanthomonas suwonensis 11-1] Length = 573 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 121/533 (22%), Positives = 222/533 (41%), Gaps = 26/533 (4%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 F+ P Y LY L+ + L A I FRI S+ISVP + AR+ LA Sbjct: 51 IFFWSQKPAYTPLYTGLDPKATAEATDLLRAAQIPFRIDQATSAISVPEENLHDARLKLA 110 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 GL + S G+EL ++ FG++ F++ ALE E+ RTI ++ + ARVH+ + Sbjct: 111 GSGL-TESGRLGFELMERDPGFGVSQFVENARYQHALETELVRTISTLRPVRDARVHLAI 169 Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 P +F + +ASV++ + +V + +AI HLV++++P+L VTV+D G++ Sbjct: 170 PKPSAFTRAREAASASVVLELRSGAVLERNQVDAIVHLVSSSIPDLAPERVTVVDQNGRM 229 Query: 217 LT--ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 ++ N+ + V+ + I + L G + V +++ + Sbjct: 230 ISRNGNDSASELSAVQFEQVRRQETSYNQRIRELLEPLTGSGRVNAEVTVDMDFSVTEEA 289 Query: 275 EIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVS-----DRKVPLPRS---- 325 +++ + + RS ++S++ E P+ N P + P P + Sbjct: 290 RELFNAEPQKLRSEQVSENTTAGEG--PQGIPGATSNTPPGAVAQQNADGTPAPGTVATA 347 Query: 326 -LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY 384 + N+E++ T ++ R++ AV+V+ G+ A Q + Sbjct: 348 TAAGNSSRSATRNFELDRTLQHTRQPAGRIRRVTAAVLVDHVPRAGGDGKVALQPLSEQE 407 Query: 385 LAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALV 444 LA + ++V A G + RGD +++ + F+ + + D R A V Sbjct: 408 LARVQELVRQAVGFDPARGDVVSVVNAPFVREDAP-AAEPLKWWEDPRMRDIARV----- 461 Query: 445 FLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDS 503 L G L+V L LR L I + G S P ++ V+ D AL Sbjct: 462 -LAGALVVLALLFGVLRPSLRQIASPAGAKKSGSGEASDEPATAEVSLVEDDLDIPALAG 520 Query: 504 SNQDIFSHSRNLQSRINSYVSKQSDLR-LLHMIEINEERFAKILRKWARSEIE 555 + + + S S + LR + + +R A++++ W +E Sbjct: 521 DTAQLGLQAPGAPMALPSSNSYEDRLRNAREAVRADSKRVAQVVKDWLGNEAA 573 >gi|313673744|ref|YP_004051855.1| flagellar m-ring protein flif [Calditerrivibrio nitroreducens DSM 19672] gi|312940500|gb|ADR19692.1| flagellar M-ring protein FliF [Calditerrivibrio nitroreducens DSM 19672] Length = 554 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 140/570 (24%), Positives = 257/570 (45%), Gaps = 34/570 (5%) Query: 1 MAILD---QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEV 57 M + D Q F+ + + + I+ A IL+ I++ + ++ N P Y L+ L Sbjct: 1 MNLKDVGEQFKTVFQKFSKVQQIAIISAAVAILLSIIVLV---YWANKPVYKILFANLSQ 57 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 D + L I + + D+G +I VP+ V + RI LA +G+P G+ELFDK Sbjct: 58 EDAAEVVAKLKAKKIPYNLKDSGKTIEVPAKDVYETRIELAKEGIPKGGG-VGFELFDKT 116 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 SFG+T F Q + RAL+GE++RTI ++ + ARVH+ +P F A+V++ Sbjct: 117 -SFGITEFAQNVNYQRALQGELSRTISTLEEVEEARVHLTLPKDKLFITEDGEAKAAVVL 175 Query: 178 RAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI----LGKSL 231 + +AI LV AV L + +V ++D+ G LL+ + E N+ L Sbjct: 176 KLKKGETLNRDKVKAIASLVVGAVKGLKIQNVQIVDTQGNLLSESLNEENLPYVKTQTQL 235 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + ++ I IN LA LG +N + V AE++ D ++I + +D + V RS + Sbjct: 236 EYQKKVEKIISSKINSLLATTLGENNAVAQVTAEIDFDKKEINKEEFD-QNPVLRSSQTI 294 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + ++ + P+ VE P++++ + K EE N+EI Sbjct: 295 EIESKNTPNTPQGQPGVE---PNLAEPNIQQNGVNSTYTKNEETQNFEIGKTVTKEEKSI 351 Query: 352 YKLERLSIAVVVNKGRLTEVLGR---SADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 ++RL+IAVVVN G+ + + L +I +V+ A G + +RGD I + Sbjct: 352 GSIKRLTIAVVVNDKAEIVKEGKKEVTKYVPRTKEELDKIKGLVAKAAGFDEKRGDQIEV 411 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNID 467 T++ F +Q+ S ++ M+ L + + LV LL FL + +++L +I Sbjct: 412 TNVSFDTSQMSESKLLEKEKMNELIIQISKYVMVLVMF---LLFYFLVIRPIMKKLGDIK 468 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSS-----NQDIFSHSRNLQSRINSY 522 + K GE+ + L +D++ + + + + + Sbjct: 469 ETKSGELAAVGDIPLK----GANVDLQLDDSVKFPKTLEELEREIESELDEKVSVDVGTV 524 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARS 552 +K ++ ++ + E A +++ W + Sbjct: 525 KTKVMVKKIEEAVKEDPEMIANLIKTWLKE 554 >gi|238782822|ref|ZP_04626851.1| Flagellar M-ring protein [Yersinia bercovieri ATCC 43970] gi|238716245|gb|EEQ08228.1| Flagellar M-ring protein [Yersinia bercovieri ATCC 43970] Length = 569 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 135/594 (22%), Positives = 250/594 (42%), Gaps = 79/594 (13%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 MA+L+++ + +IL I L +A F+ SP Y L+ + D Sbjct: 17 MAVLERIRS----------SPKIILLISASAAITLIIALLFWAKSPDYRVLFSNITDQDG 66 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ N+ +R D G +I VP+ V +AR+ LA GLP + G+EL D+ F Sbjct: 67 GAIVSQLAQMNVPYRFEDRGGAIMVPADKVYEARLKLAQLGLPKGGA-VGFELLDQE-KF 124 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 G++ F +++ RALEGE++RTI+++ + ARVH+ MP F + +P+ASV +R Sbjct: 125 GISQFSEQVNFQRALEGELSRTIETLGSVNGARVHLAMPKPSMFVREQKQPSASVTVRLN 184 Query: 181 NPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQ 238 N + + AI +L+A+AVP L VT++D G+LLT + L ++ Sbjct: 185 NGRLLEGEQVSAITYLIASAVPGLSADSVTIVDQNGRLLTQRGGQTTQT-SQLKFTSEVE 243 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVER-SIRLSKDAQRS 297 + + I L+ +G +N +S V A+L+ + + P++ +R SIR S+ + Sbjct: 244 ADFQQRIQSILSPIVGRNNVKSQVTAQLDFTLHEQTAEQFQPNTAPDRMSIRSSQSSDAE 303 Query: 298 E-------------TSQPESAVTVEQNM--------------------PHVSDRKVPLPR 324 + ++QP T + Sbjct: 304 QGGKGGVGGVPGALSNQPSLPATAPITQAATPTAPGATGAAGAATAGATGAKGGAATVAT 363 Query: 325 SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY 384 + ++++ +NYE++ +ERLSIAVV+N L G SA Sbjct: 364 PIPFNNRRDNTTNYELDRTLTHIKRSTGSIERLSIAVVINY--LPTAEGESA--PLPKEQ 419 Query: 385 LAEINKIVSAATGINSRRGDTITITSMDF--LENQLFNSGTVQVSFMDILSRHFATVINA 442 + +I+ +V A G ++ RGDT+ I + F +E ++ Q F+++L + A Sbjct: 420 MEQISALVKEAVGFSAERGDTVNIVNSPFNNVEEEVAPPFWQQAGFINLL-------MAA 472 Query: 443 LVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALD 502 +L+ ++ A++ + + I + + Sbjct: 473 GRYLLVAIVAWLFWRKAIKP--------------AWLRNQELILARLELEKEARQAELDA 518 Query: 503 SSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIED 556 + + R+ + ++ Q+ L + E A ++R+W E++ Sbjct: 519 HKRKAESGERAKAEQRVEAELNTQN---LRELAEQEPRVVALVIREWINKELKS 569 >gi|120603707|ref|YP_968107.1| flagellar M-ring protein FliF [Desulfovibrio vulgaris DP4] gi|120563936|gb|ABM29680.1| flagellar M-ring protein FliF [Desulfovibrio vulgaris DP4] Length = 538 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 138/560 (24%), Positives = 246/560 (43%), Gaps = 38/560 (6%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 D+ F+ + R I+ LA LV + +F ++N P Y LY L D NR+ Sbjct: 10 DKARAFWSRISMSQRVFIVGLA---LVTVGIFFTLILWINRPDYRVLYSNLAGEDANRVV 66 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L + +++ ++G ++ VP+ + RI +A +G G+E+FD + G T Sbjct: 67 KLLQANKVPYKLENDGGTVLVPADKLYDLRIKVAGEG-NLVGQGIGFEIFDDL-KVGQTD 124 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP-- 182 F+Q+I RAL+GE+ RTI G+ ARVH+V+P F + +P+ASV+++ Sbjct: 125 FVQKINYQRALQGELIRTISEFPGVETARVHLVIPHRSLFIEEQQKPSASVVVKLREGKK 184 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQAIQH 239 + +AI +LV AV +D V+V D++GK+L T ++ + + L +Q Sbjct: 185 MEAQDVQAIVNLVVMAVEGMDRNRVSVADTSGKILYYPTEDDSLQGLTTTQLEYKMRLQQ 244 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 +E I + L +G + V A+++ + IR +YDP+ V RS + S+++ R Sbjct: 245 NLERRIEELLYPVIGPGKVIAKVNADVDFSQRTIRRELYDPEKTVVRSEQRSEESTRGRA 304 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + A + + S + ++ +N+EIN + + L RLS+ Sbjct: 305 NLEAGAPDA-----NFRGDGISGSASTQEGTRETRTTNFEINKEEQNIVANVGDLSRLSV 359 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AV+V+ G + + I ++VS+A G + RGDT+ + S+ F L Sbjct: 360 AVIVDGTYEKAADGTYTFVPRNAEEMQRIRQLVSSAVGYDRARGDTVEVNSISFGGPDLP 419 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 ++ F+D R ++NAL+ + LLV + AL R + + G Sbjct: 420 QEASLPQLFLDYALRLGKPLLNALLVFLFLLLVVRPVVMALIR----PKVEGEMIEGLEG 475 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 L A+ G D + +DI +H+ + E N Sbjct: 476 LPAGEERLALIEGDEEVDALDALRKIEDIKAHAM-------------------QLAEQNM 516 Query: 540 ERFAKILRKWARSEIEDRYT 559 ++ I+R W ++ + Sbjct: 517 DQAVGIIRSWLKNAEGTKAG 536 >gi|54294647|ref|YP_127062.1| flagellar MS-ring protein [Legionella pneumophila str. Lens] gi|53754479|emb|CAH15963.1| Flagellar M-ring protein [Legionella pneumophila str. Lens] Length = 544 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 123/577 (21%), Positives = 242/577 (41%), Gaps = 63/577 (10%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 MA+ D SL R + + + I + +A + P Y LY +L D Sbjct: 1 MALADNASVAATKFASLSIPRQIGVLFGLAASIAIGVAVVLWSRDPSYVPLYSQLNAQDS 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS- 119 + I L +IDF+I N + VP+ + AR+ LAAQGLP + G++L Sbjct: 61 SEILTVLERNSIDFKIDKNNGLLMVPADELQSARLKLAAQGLPR-DTAIGHDLLGSSGGV 119 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 F + FM+ +ALE E+ARTI + I +ARVH+ +P +F + P+ASV I Sbjct: 120 FNTSQFMENARYKQALEAELARTISKFNNIKSARVHLAIPRESAFVRDSQEPSASVFIDV 179 Query: 180 INPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQ 235 + K + AI +LVA+++PNL G VTV+D G+LL + + L Q Sbjct: 180 YSGFEIKKHTIAAIVNLVASSIPNLSTGRVTVVDQDGQLLNEGSGYNLFSETERFLDYRQ 239 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 ++H+ I L LG R+ V A+++ + + + +++P+ RS + +++ Sbjct: 240 NLEHQYAQKIQDILTPILGYGRVRAKVSADIDFTSYEQTQELFNPELSALRSEQTMQES- 298 Query: 296 RSETSQPESAVTVEQNMPHV--------SDRKVPLPRSLENTDKKEE----------QSN 337 R+ +++ N P + ++ P +L ++ N Sbjct: 299 RNASNEASGVPGTLSNTPQPNSSLGQKNNPQQNATPNNLPQQTSSDQMQAKDVRMQTTKN 358 Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSAD-QGKIDSYLAEINKIVSAAT 396 +E++ T + ++RLS+AV+V+ + + + + + +I +VS A Sbjct: 359 FELDKTISHTKNQPGTIKRLSVAVLVDNRPVMNDKTKKLEKKPLTKEEIEQIKLLVSDAI 418 Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456 G+N +RGD++ + + F++ + + + + ++ + + G L + + Sbjct: 419 GLNVKRGDSLNVINSSFVKPDPIEAIPEEHFWQK------DSFLSVIKQIGGALFILAIL 472 Query: 457 LHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ 516 LR + N +D + + + L Sbjct: 473 FGVLRPMLK----------------------------TLASNKDMDQATDNQDTGDFTLD 504 Query: 517 SRINSYVSKQSDLR---LLHMIEINEERFAKILRKWA 550 +I+ + + + L +++ +R A++++ W Sbjct: 505 GKISFRDVQDYETQLSLLRQVVDKEPKRVAQVVKSWV 541 >gi|120554914|ref|YP_959265.1| flagellar MS-ring protein [Marinobacter aquaeolei VT8] gi|120324763|gb|ABM19078.1| flagellar M-ring protein FliF [Marinobacter aquaeolei VT8] Length = 568 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 124/556 (22%), Positives = 237/556 (42%), Gaps = 32/556 (5%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 L R + L + + L +A + P+Y + L + ++ L Sbjct: 27 NLLLGFNRLNLLRQVGLMVGLAASVALGVAVVLWAQEPNYQPVVGDLSAYNPQDVTTILD 86 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 ID+++ ++ VPS V AR+ LAA+G+ + GYEL D+ G + FM+ Sbjct: 87 SNGIDYKMDPRTGALLVPSEQVYSARLKLAAEGV-TDQKTMGYELLDQERGLGTSQFMET 145 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV--YK 186 I+ R LEGE+ARTI ++ G+ ARVH+ +P+ F + PTASV + + Sbjct: 146 ISYRRGLEGELARTIAAMRGVRNARVHLAIPERSVFIRDAREPTASVFLEVFAGRRPEPE 205 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIEMN 244 AI +LVA ++P ++ VTV+D G LLT +E E + + ++ + Sbjct: 206 QIRAIVNLVAGSIPMMNRDQVTVVDQNGNLLTGDEVQAETDRMKDQYEYTSRVEERLTRR 265 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE------ 298 + + +G +R+ V A+L+ + E +Y+P+ + RS R + + + Sbjct: 266 VASLIGPIVGEGRYRAEVTADLDFSAVERAEELYNPEQQAVRSERELSEQRVAGAQGGIP 325 Query: 299 ---TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 +QP A TV + + + P + + E NYE++ T + ++ Sbjct: 326 GALANQPPGAATVPE-QATAAPGEDGAPAAPPVNVRSESTRNYELDRTVSYTRQELGAVK 384 Query: 356 RLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 R+++A+ V+ ++ + G + Q ++ L ++ +V A G ++ RGD++T+ + F Sbjct: 385 RVTVALAVDDMKVVDPETGEVSYQPWPEAELQRLSMLVRDAVGYSASRGDSVTVMNTAFA 444 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 + V+ LV L+ L + L L + + GE Sbjct: 445 PEEAVEFEAPGFWEQPWFWDLMKQVLAGLVILILVLGLLRPTLKTLSGGGRRERGEGGEE 504 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 G L+ A+ + D++ L + + ++N+ L + Sbjct: 505 GEYGGLADIEGGQALRDAMSSQDDLLLPGAT-------DSYDRQLNA---------LKGL 548 Query: 535 IEINEERFAKILRKWA 550 I + R A+++R+W Sbjct: 549 IAEDPARVAQVMRQWV 564 >gi|94264093|ref|ZP_01287892.1| Flagellar FliF M-ring protein [delta proteobacterium MLMS-1] gi|93455509|gb|EAT05699.1| Flagellar FliF M-ring protein [delta proteobacterium MLMS-1] Length = 530 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 136/560 (24%), Positives = 244/560 (43%), Gaps = 44/560 (7%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 I Q++ F + L + + V+ + +A L+ L D Sbjct: 7 IFTQVVSIFNN---LSMIQKITAGVVVALVFGGLVAMTTMAPKLDEQVLFANLSQEDAAE 63 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + L E NI +R+SD G++I VPS+ V + R+ LA +GLP G+E+FD+V G Sbjct: 64 VVERLREMNIPYRLSDTGNAIMVPSNQVHETRLALAGEGLPRGGG-VGFEVFDEV-GLGT 121 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T F+ + RAL+GE+ARTI+ I ARVHI P F + TASV +R Sbjct: 122 TDFVNRLNLQRALQGELARTIRQFEQIQEARVHIATPRESVFIEDEKPVTASVSLRMRGR 181 Query: 183 SVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQ 238 ++I +LV+ AVP L +T++D+ G+LL ++ + G L Q I+ Sbjct: 182 DQLSQHQIQSIVNLVSTAVPGLSDESITLVDTAGRLLYRKRGDIGPVLSGSQLEYQQNIE 241 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 + L +GV+ R++V A+++ + + E ++DP+ +V RS ++ +A + Sbjct: 242 ESARRKVESMLEEVVGVNRVRASVTADIDFNRVNLTEEIFDPEEQVVRSEQVITEADQ-R 300 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 +Q + + +D S + + + NYEI+ ++ T ++RLS Sbjct: 301 GNQARGIPGAKGELATFADEGGGGADS--SYQRSDVTRNYEISRQTRQTQEMGGGIQRLS 358 Query: 359 IAVVVNKG--RLTEVLGRSADQ--GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 +AV+V+ R+T+ GR+ + + + + +++S A G N RGD + + SM F Sbjct: 359 VAVMVDGTYERVTDEEGRTTMEYRPRSEEEMEYFERLISNAVGYNRDRGDQVEVVSMPFA 418 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 + + + +++ A + L+ G +L + RL D Sbjct: 419 LSAITEPEEDPMDRWREMAQWLAMPLVYLLIAFGVML---FVVRPFLRLLAAKD------ 469 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 L S T G + D+ R L + R+ + Sbjct: 470 -----LEAKRASQRATVGRAEGEA----EDEDDLSMGPRGLSDQ----------ERIYRL 510 Query: 535 IEINEERFAKILRKWARSEI 554 + + +R A ++R+W R E+ Sbjct: 511 AQSDPDRAADLVRRWLREEV 530 >gi|302383920|ref|YP_003819743.1| flagellar M-ring protein FliF [Brevundimonas subvibrioides ATCC 15264] gi|302194548|gb|ADL02120.1| flagellar M-ring protein FliF [Brevundimonas subvibrioides ATCC 15264] Length = 542 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 146/549 (26%), Positives = 245/549 (44%), Gaps = 17/549 (3%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 F + G R+ ++ V + +A V LY L++ + I+ +L + Sbjct: 4 FTAALQRFGIGRLAMVLGVGAGVAAVLVALMLRVGQAPDALLYSNLDLREAGEITASLEQ 63 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 + I + +GS+I V VG+AR+ LA +GL +S S GYELFD + G T F Q+I Sbjct: 64 SGIPYSTRGDGSTIMVNRDQVGEARLMLAGKGLVTSGS-VGYELFDTQSVLGQTEFQQQI 122 Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN-PSVYKSA 188 + RAL+GE+ARTI S+ G+ +ARV I +P F++ A PTASV++ Sbjct: 123 SEQRALQGELARTIMSMRGVQSARVAIALPKRELFQQDAAEPTASVVVGLGGRKLSSDQV 182 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ-AIQHEIEMNINK 247 AIR ++A++VPNL VTV+D T + L A + E + + A + +++ I Sbjct: 183 RAIRAVIASSVPNLKPNKVTVVDETNQTLAAADDEAGFSSATAEEAKGATEAQLQQRIKD 242 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVT 307 + +G R V A+++M +E YDPD +V RS + + T + T Sbjct: 243 LVEGVVGPGAARVQVTADIDMTRSTTQEQKYDPDGQVVRSTSTNGTQSQDTTGVADGGAT 302 Query: 308 VEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG- 366 N+P + S E+ + E +NYEI+ + T + ++++LS+AV V+ Sbjct: 303 ATNNIPGGAAPATTPAGSTESANT--ETTNYEISNTTTTTVKEPGEVKKLSVAVAVDGKL 360 Query: 367 -RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425 E G + + + +I +V AA G N RGD + +T++ F + L ++G Sbjct: 361 TPAAEPGGEATYAPRTAEEITQIEDLVKAAMGFNEERGDQVRVTNVRFNRDALVSAGGTD 420 Query: 426 --VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 ++ + LV LV LL+ F L L + + + GG I Sbjct: 421 GGSPLLNFTKNDIMRGVELLVLLVTALLLIFFVLRPLLKSASGGGQQMAMAGGGQIPVTS 480 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 ++ V ++ R +RI V S ++ +E + + Sbjct: 481 LQTTMVGG--------SMGQLPGPSEMEQRIDIARIEGQVKASSVKKVADFVEKHPDEST 532 Query: 544 KILRKWARS 552 ILR W Sbjct: 533 SILRSWVHE 541 >gi|88704287|ref|ZP_01102001.1| flagellar M-ring protein FliF [Congregibacter litoralis KT71] gi|88701338|gb|EAQ98443.1| flagellar M-ring protein FliF [Congregibacter litoralis KT71] Length = 574 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 135/578 (23%), Positives = 233/578 (40%), Gaps = 34/578 (5%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 AI + L F + TR L L + I L M +V P+Y LY + D N Sbjct: 4 AIDNNLFNRFSGFSRQPATRQLALLIGLAASIALAMGMVQWVVEPNYKPLYGTMAPEDTN 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 + +L +D+R+ ++VP+ V +AR+ LA G P G+E + G Sbjct: 64 DVIASLEANGMDYRMDQRTGMVAVPAGEVHRARLLLAGDGYPR-GEGVGFESLYREQEIG 122 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 L+SFM++ RALE E+ARTI ++ + ARVH+ M +F + +P ASVM+ Sbjct: 123 LSSFMEQARFHRALESELARTISALDNVRGARVHLAMAKQSAFLRQREQPAASVMLNLYA 182 Query: 182 PSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAI 237 + I HLVA++VPNL+ V+V+D GKLL+ + E + + Sbjct: 183 GRTLNDRQLAGIIHLVASSVPNLESEQVSVVDQQGKLLSQQGRDDEFAFTQDQFQYTRQL 242 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR- 296 + + I L LG + R+ V A+++ + E Y PD++V RS + S++ Sbjct: 243 ESNLSARIVDILEPILGANAVRAQVAADVDFTRVERTEETYAPDTRV-RSEQTSEETSNQ 301 Query: 297 ---------------------SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ 335 ++ +QP N D L + Sbjct: 302 PYGGGVPGTLSNEPPIDTTVTAQQAQPNLGANAGVNTGVNVDATAQLGAIPPARTSRRST 361 Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395 NYE++ L++LSIAVV++ T G + + + E+ +V A Sbjct: 362 VNYEMDKTISHVRETPGTLQKLSIAVVLDYIESTADDGTTTREPMPQERIDEVTSLVREA 421 Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455 G ++ RGDT+++ S F+E ++ S ++ + L+ L+ L + F+ Sbjct: 422 VGFDAARGDTVSVISASFVEAPAIEDAVIESSILE--EDWIWQLGKGLLALIVLLSLIFV 479 Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL 515 + L + + G +++ G M +D + L NQ + Sbjct: 480 VVRPLVKFAAVPVPMMQSPQGIQGPDGQAVAALGGAG-MSDDQVTLGGQNQAGLPGTSGD 538 Query: 516 QSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 Q + +R A+++R W + Sbjct: 539 GGAGGYQQQLQMARSV---AAGEPDRAAQVVRNWVSDD 573 >gi|291613068|ref|YP_003523225.1| flagellar M-ring protein FliF [Sideroxydans lithotrophicus ES-1] gi|291583180|gb|ADE10838.1| flagellar M-ring protein FliF [Sideroxydans lithotrophicus ES-1] Length = 546 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 114/533 (21%), Positives = 228/533 (42%), Gaps = 43/533 (8%) Query: 38 AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97 + +P Y LY + D + +L + NI ++ ++ G ++ VP+ V + R+ + Sbjct: 40 GLFMWGQTPDYRVLYANMSERDGGAVIESLQQQNIPYKFTE-GGTLMVPADRVYEVRLQM 98 Query: 98 AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 AA+GLP + G+EL + FG + F++++ RALEGE++R++++I+ + +ARVH+ Sbjct: 99 AAKGLPKGGT-VGFELME-NQKFGTSQFLEQVNYQRALEGELSRSVETIASVASARVHLA 156 Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 +P F K +P+ASV++ + AI HL++++VPN++ +VTV+D +G Sbjct: 157 IPKQSVFVKEQQKPSASVILSLRAGNSLDEGQVSAIVHLISSSVPNMNAQNVTVVDQSGT 216 Query: 216 LLTA---NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272 LL++ + E+ + L V+ I+ + I L GV N R+ V A L+ + Sbjct: 217 LLSSARDSNAEQLMDATQLKYVRQIEQDYVKRIEDILIPITGVQNVRAQVTASLDFSQTE 276 Query: 273 IREIVYDPDSK----VERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV-------- 320 + P+ RS++ + + ++ N P V Sbjct: 277 QTAETFRPNQPPNQAAVRSLQTLETQNGTTST--GGVPGALSNQPPVPATAPIVTPASAV 334 Query: 321 PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380 KE +NYE++ T ++RLSIAVVVN T G++ + Sbjct: 335 VAAAGTAGNMHKELTTNYEVDRTIQHTKLPVGSIKRLSIAVVVNNPSTTGKDGKATSRPY 394 Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440 D+ A+I +V G +++RGD++ + + F E Q + T D ++ Sbjct: 395 TDAEKAQITALVKETVGFDAKRGDSLNLLNSAFNEQQEIIAETPMWKQPDTIAMAKDIFK 454 Query: 441 NALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIA 500 L+ L+ + A + + A++ + + + G Sbjct: 455 YLLIAGGIGFLLFGIIKPAFKTISEQSAAQETAMMSAAQHGQISHQAGNAAG-------- 506 Query: 501 LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ ++ + + + + + + A ++++W E Sbjct: 507 -------------QYAAQQSASSYEDNLQLAKQLAKDDPKIVATVVKEWVNKE 546 >gi|52841987|ref|YP_095786.1| flagellar MS-ring protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|148359304|ref|YP_001250511.1| flagellar basal body M-ring protein FliF [Legionella pneumophila str. Corby] gi|52629098|gb|AAU27839.1| flagellar basal body M-ring protein FliF [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|148281077|gb|ABQ55165.1| flagellar basal body M-ring protein FliF [Legionella pneumophila str. Corby] gi|307610459|emb|CBX00030.1| flagellar M-ring protein [Legionella pneumophila 130b] Length = 544 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 126/577 (21%), Positives = 242/577 (41%), Gaps = 63/577 (10%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 MA+ D SL R + + + I + +A + P Y LY +L D Sbjct: 1 MALADNASVAATKFASLSIPRQIGVLFGLAASIAIGVAVVLWSRDPSYVPLYSQLNAQDS 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS- 119 + I L +IDF+I N + VP+ + AR+ LAAQGLP + G++L Sbjct: 61 SEILTILERNSIDFKIDKNNGLLMVPADELQSARLKLAAQGLPR-DTAIGHDLLGSSGGV 119 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 F + FM+ +ALE E+ARTI + I +ARVH+ +P +F + P+ASV I Sbjct: 120 FNTSQFMENARYRQALEAELARTISKFNNIKSARVHLAIPRESAFVRDSQEPSASVFIDV 179 Query: 180 INPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQ 235 + K + AI +LVA+++PNL G VTV+D G+LL + + L Q Sbjct: 180 YSGFEIKKHTIAAIVNLVASSIPNLSAGRVTVVDQDGQLLNEGSGYNLFSETERFLDYRQ 239 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 ++H+ I L LG R+ V A+++ + + + +++P+ RS + +++ Sbjct: 240 NLEHQYAQKIQDILTPILGYGRVRAKVSADIDFTSYEQTQELFNPELSALRSEQTMQES- 298 Query: 296 RSETSQPESAVTVEQNMPHV--------SDRKVPLPRSLENTDKKEE----------QSN 337 R+ +++ N P + ++ P +L ++ N Sbjct: 299 RNASNEASGVPGTLSNTPQPNSSLGQKNNPQQNATPNNLPQQTSSDQMQAKDVRMQTTKN 358 Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSAD-QGKIDSYLAEINKIVSAAT 396 +E++ T + ++RLS+AV+V+ + + + + + +I +VS A Sbjct: 359 FELDKTISHTKNQPGTIKRLSVAVLVDNRPVMNDKTKKLEKKPLTKEEIEQIKLLVSDAI 418 Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456 G+N +RGD++ + + F++ + + + F +VI + G L + + Sbjct: 419 GLNVKRGDSLNVINSSFVKPDPIEAIPEEHFWQ---KDSFWSVIKQ---IGGALFILAIL 472 Query: 457 LHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ 516 LR + N +D + + + L Sbjct: 473 FGVLRPMLK----------------------------TLASNKDMDQATDNQDTGDFTLD 504 Query: 517 SRINSYVSKQSDLR---LLHMIEINEERFAKILRKWA 550 +I+ + + + L +++ +R A++++ W Sbjct: 505 GKISFRDVQDYETQLSLLRQVVDKEPKRVAQVVKSWV 541 >gi|258592505|emb|CBE68814.1| Flagellar basal body M-ring protein [NC10 bacterium 'Dutch sediment'] Length = 539 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 133/557 (23%), Positives = 240/557 (43%), Gaps = 37/557 (6%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 +++ Q + GR +++ L + + F + P L+ +L SD Sbjct: 7 KVVELFKQVWGGLGLTGRALTVLVGGGALTAL---LWMVFSTHRPDMTTLFSQLNPSDAG 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L + +R+ D G+ I VPS++V + R+HLA +GLP G+E+FD+ G Sbjct: 64 AIVDELKSGKVSYRVVDGGTRILVPSAVVHEIRLHLATRGLPQGGG-VGFEIFDRTT-LG 121 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 T F+Q + RAL+GE+ARTI + + AARVH+ +P F + TASV++ Sbjct: 122 TTDFVQRLNYQRALQGELARTIGQLKEVTAARVHLALPQPSVFTEQEKPATASVVLNLRP 181 Query: 182 P--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK--SLSIVQAI 237 + I HLV+++V L+ +TV+D++GKL+ R G +A+ Sbjct: 182 GARLTPEQVRGIVHLVSSSVEGLNADRITVVDTSGKLIARPAEGRLGAGSTGQFEAQEAV 241 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + E+E + L LG + V A+++ + + E +DP V +S + + + Q+S Sbjct: 242 EGELERRVRTMLEEILGPNKATVRVAAQMDFTSVERTEERFDPRG-VIKSEQRTTETQQS 300 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 T+ P + V N+P + +S + K+ E Y+++ +L+R+ Sbjct: 301 VTASPAAVAGVASNVPDQTATPSQSGQSTAKSTKEAETVQYDVSKVLERKVFSPGELKRV 360 Query: 358 SIAVVVNKGRLTEVLGRSADQ----GKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 S+AV+V+ G+ ++ + L +I V A G ++ RGD + + F Sbjct: 361 SVAVMVDGTYKPVPDGKGGERKEYVPRKSDELEKIKVAVKNAVGFSAARGDEVEVVEFPF 420 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 + + + +++ ++ VG LLV GL L R + Sbjct: 421 DTSATEKERALMEE--AERKAFWYSLVKPVLMGVGVLLVLVFGLRPLIRSLKERRLPTFD 478 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 G + P +A+ TG P+ ALD ++ D L+ Sbjct: 479 TPGM-LSMSQPGPTAIETG--PDQAPALDVASDDPLRTG------------------LME 517 Query: 534 MIEINEERFAKILRKWA 550 + N A+++R W Sbjct: 518 LARNNPNVVAQLVRAWM 534 >gi|54297673|ref|YP_124042.1| flagellar MS-ring protein [Legionella pneumophila str. Paris] gi|53751458|emb|CAH12876.1| Flagellar M-ring protein [Legionella pneumophila str. Paris] Length = 544 Score = 392 bits (1006), Expect = e-106, Method: Composition-based stats. Identities = 126/577 (21%), Positives = 242/577 (41%), Gaps = 63/577 (10%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 MA+ D SL R + + + I + +A + P Y LY +L D Sbjct: 1 MALADNASVAATKFASLSIPRQIGVLFGLAASIAIGVAVVLWSRDPSYVPLYSQLNAQDS 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS- 119 + I L +IDF+I N + VP+ + AR+ LAAQGLP + G++L Sbjct: 61 SEIMTILERNSIDFKIDKNNGLLMVPADELQSARLKLAAQGLPR-DTAIGHDLLGSSGGV 119 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 F + FM+ +ALE E+ARTI + I +ARVH+ +P +F + P+ASV I Sbjct: 120 FNTSQFMENARYKQALEAELARTISKFNNIKSARVHLAIPRESAFVRDSQEPSASVFIDV 179 Query: 180 INPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQ 235 + K + AI +LVA+++PNL G VTV+D G+LL + + L Q Sbjct: 180 YSGFEIKKHTIAAIVNLVASSIPNLSAGRVTVVDQDGQLLNEGSGYNLFSETERFLDYRQ 239 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 ++H+ I L LG R+ V A+++ + + + +++P+ RS + +++ Sbjct: 240 NLEHQYAQKIQDILTPILGYGRVRAKVSADIDFTSYEQTQELFNPELSALRSEQTMQES- 298 Query: 296 RSETSQPESAVTVEQNMPHV--------SDRKVPLPRSLENTDKKEE----------QSN 337 R+ +++ N P + ++ P +L ++ N Sbjct: 299 RNASNEASGVPGTLSNTPQPNSSLGQKNNPQQNATPNNLPQQTSSDQMQAKDVRMQTTKN 358 Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSAD-QGKIDSYLAEINKIVSAAT 396 +E++ T + ++RLS+AV+V+ + + + + + +I +VS A Sbjct: 359 FELDKTISHTKNQPGTIKRLSVAVLVDNRPVMNDKTKKLEKKPLTKEEIEQIKLLVSDAI 418 Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456 G+N +RGD++ + + F++ + + + F +VI + G L + + Sbjct: 419 GLNVKRGDSLNVINSSFVKPDPIEAIPEEHFWQ---KDSFWSVIKQ---IGGALFILAIL 472 Query: 457 LHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ 516 LR + N +D + + + L Sbjct: 473 FGVLRPMLK----------------------------TLASNKDIDQATDNQDTGDFTLD 504 Query: 517 SRINSYVSKQSDLR---LLHMIEINEERFAKILRKWA 550 +I+ + + + L +++ +R A++++ W Sbjct: 505 GKISFRDVQDYETQLSLLRQVVDKEPKRVAQVVKSWV 541 >gi|294664059|ref|ZP_06729461.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292606162|gb|EFF49411.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 572 Score = 392 bits (1006), Expect = e-106, Method: Composition-based stats. Identities = 110/547 (20%), Positives = 216/547 (39%), Gaps = 33/547 (6%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ Q+F SL TR L + ++I + + +A F+ P Y +LY L+ + Sbjct: 15 EKAGQWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAA 74 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L A I ++I +ISVP + AR+ LA GL + G+EL +K FG++ Sbjct: 75 DLLRTAQIPYKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQ 134 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 F++ ALE E++RTI ++ + ARVH+ +P +F + +ASV++ Sbjct: 135 FVENARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQG 194 Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240 + +AI +LVA+++P++ VTV+D +G++L+ + + V+ + Sbjct: 195 LERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESS 254 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I + L G +++ + +Y+ + RS ++S + + Sbjct: 255 YNQRIRELLEPMTGPGRVNPETSVDMDFSVVEEARELYNGEPAKLRSEQVSDTSTSATG- 313 Query: 301 QPESAVTVEQNMPHV--------------SDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346 P+ N P + + K NYE++ Sbjct: 314 -PQGPPGATSNSPGQPPAPAVAGAPGTPAAANGQAAAPATPTESSKSATRNYELDRTLQH 372 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 T +++R+S+AV+++ G+ +Q + L I +V A G ++ RGDT+ Sbjct: 373 TRQPAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQAVGFDAARGDTV 432 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 ++ + F+ + + V N L LVG ++V L +R Sbjct: 433 SVMNAPFVREAVAGEEGPKWWEDP-------RVQNGLRLLVGAVVVLALLFGVVRPTLRQ 485 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 + + ++ D+ + +D ++ ++ Sbjct: 486 LTGVTAVKDKQGKAGKDGTPQSADVRMVDEDDDLMPRLEEDTAQIGQDKKTPDR------ 539 Query: 527 SDLRLLH 533 S RL Sbjct: 540 SARRLRR 546 >gi|328542763|ref|YP_004302872.1| flagellar M-ring protein [polymorphum gilvum SL003B-26A1] gi|326412509|gb|ADZ69572.1| Flagellar M-ring protein [Polymorphum gilvum SL003B-26A1] Length = 538 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 139/553 (25%), Positives = 256/553 (46%), Gaps = 21/553 (3%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++ L++F + +LG TR+ + +V + I +F F V +P LY L + D + I Sbjct: 1 MNGLVEFIR---TLGPTRVAAMGAVAAILIGVFAFIIFRVTAPQMTQLYSDLTLEDSSAI 57 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L I F + +G++I +P V + R+ LA +GLP+ S GYE+FD+ ++ G T Sbjct: 58 VNQLESLGIPFELKRDGATIMIPKEQVARVRMRLAEEGLPTGGS-IGYEIFDRSDTLGAT 116 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 SF+Q I +RA+EGE+ARTI+S+ IV+ARVH+V+P+ F++ P+AS+ I+ Sbjct: 117 SFVQNINHLRAMEGELARTIRSLDRIVSARVHLVIPERQLFQRDRRPPSASIAIKTRGSL 176 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ---AIQHE 240 AI+HLVAAAV L V+++D TG+LL E + S+ + I+ Sbjct: 177 GQNEIRAIQHLVAAAVDGLGPERVSIVDDTGRLLATGSDESAEGIVASSLQERTFEIEQR 236 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 ++ I + L + +G R V AE++ + +DP+ +V RS + +++ S + Sbjct: 237 LKNQIEEILNSVVGPGRARVRVAAEVDFNRITETSEKFDPEGQVVRSTQSKEESSTSISR 296 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 Q + VTV +P+ + E ++ EE N+EI+ + +++RLS+A Sbjct: 297 Q--AGVTVGNQIPNA-EADAGEGGDREGSNLAEEIVNFEISKSVRTEVVEAGRIKRLSVA 353 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 V+V+ G + L I +V +A G ++ RGD + + ++ F + + Sbjct: 354 VLVDGVYSPNESGEVQYAPRTQEVLDRIAVLVRSAVGFDAARGDVVEVVNLRFAQAPEPD 413 Query: 421 SGTVQVSFMDILSRHFATVIN-ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + + ++ L+ LL+ F+ LRR+ ++ E+ Sbjct: 414 FDSASAGLFEFTRDDVLRFAELGVLLLISLLLLLFVVRPLLRRIVTPEEKAPQELVIAPD 473 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 + +D + ++ + ++ + S ++ MI+ Sbjct: 474 GTLVAEVEVPAEAKEEDDEVVIEWLEE----------AKAQGALQASSIAKVGAMIDDYP 523 Query: 540 ERFAKILRKWARS 552 I+R W Sbjct: 524 TEAVTIVRGWLEE 536 >gi|114319870|ref|YP_741553.1| flagellar M-ring protein FliF [Alkalilimnicola ehrlichii MLHE-1] gi|114226264|gb|ABI56063.1| flagellar M-ring protein FliF [Alkalilimnicola ehrlichii MLHE-1] Length = 580 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 133/560 (23%), Positives = 234/560 (41%), Gaps = 23/560 (4%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 +DQL F ++ R L LA V+L + + + P Y L+ +L+ D + Sbjct: 38 MDQLEGLFGGRQNVMR---LGLAVVLLFTVAAGVLLYLWAQEPSYRTLFSELDDQDAAAV 94 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L E I +R+ + ++ VPS V AR+ LAA+GLP + G+E+ + ++FG + Sbjct: 95 IEQLEEQGIPYRLDERTGAVRVPSDQVHPARLQLAAEGLPR-GTGFGFEMLQEDSAFGTS 153 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 FM+ RALE E+AR+I ++ + AARVH+ +P F + +P ASV++ Sbjct: 154 EFMEGARFDRALETELARSIGTLRQVDAARVHLALPRESVFVRDRRQPRASVVVNLAQGR 213 Query: 184 VY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQAIQHE 240 + +AI H+VA++VP+L +V+V+D G+LLT +E ++ Sbjct: 214 RLNDEQVDAIVHMVASSVPDLAHENVSVVDERGRLLTRDEGRGLASTAGQFQYKTQVEET 273 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I LA +G + R+ V A L+ QQ E +YDPDS+V RS L + Sbjct: 274 YVRRIEDLLAPLVGRNRVRAQVNASLDFSEQQRTEELYDPDSRVIRSEALQGRRTQQGAD 333 Query: 301 QPESAVTVEQNMPHVSDR--KVPLPRSLENTD-KKEEQSNYEINTKSIATTHDNYKLERL 357 N P + + P + D E NYEI+ ++R+ Sbjct: 334 AAMGVPGALTNQPPGAGQLDGEEAPENPPPVDISSSETRNYEISRTLRQVRDPIGSIQRV 393 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 S+AVVV++ T+ G + + D + IN +V A G ++ RGD++ + + FLE + Sbjct: 394 SVAVVVDERITTDEEGNTVREPLSDEEMDRINALVQEAVGFDAARGDSVNVVNAAFLEEE 453 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 + R A + + L +R + ++ + Sbjct: 454 PVEAMPPVPLLEREWVRELIRFAIAALAFIAL------LLFVVRPMIKGMQRQRDQALRA 507 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 + G D++ Q + + ++ +K ++ Sbjct: 508 PASEEQARLAQQGGGGGAAQLAGPDANEQALLAGVQHKPYEAKLEAAK-------KLVND 560 Query: 538 NEERFAKILRKWARSEIEDR 557 E A +++ W + R Sbjct: 561 EPELAANVIKSWLAEDDGKR 580 >gi|296107351|ref|YP_003619051.1| flagellar M-ring protein FliF [Legionella pneumophila 2300/99 Alcoy] gi|295649252|gb|ADG25099.1| flagellar M-ring protein FliF [Legionella pneumophila 2300/99 Alcoy] Length = 544 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 126/577 (21%), Positives = 242/577 (41%), Gaps = 63/577 (10%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 MA+ D SL R + + + I + +A + P Y LY +L D Sbjct: 1 MALADNASVAATKFASLSIPRQVGVLFGLAASIAIGVAVVLWSRDPSYVPLYSQLNAQDS 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS- 119 + I L +IDF+I N + VP+ + AR+ LAAQGLP + G++L Sbjct: 61 SEILTILERNSIDFKIDKNNGLLMVPADELQSARLKLAAQGLPR-DTAIGHDLLGSSGGV 119 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 F + FM+ +ALE E+ARTI + I +ARVH+ +P +F + P+ASV I Sbjct: 120 FNTSQFMENARYRQALEAELARTISKFNNIKSARVHLAIPRESAFVRDSQEPSASVFIDV 179 Query: 180 INPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQ 235 + K + AI +LVA+++PNL G VTV+D G+LL + + L Q Sbjct: 180 YSGFEIKKHTIAAIVNLVASSIPNLSAGRVTVVDQDGQLLNEGSGYNLFSETERFLDYRQ 239 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 ++H+ I L LG R+ V A+++ + + + +++P+ RS + +++ Sbjct: 240 NLEHQYAQKIQDILTPILGYGRVRAKVSADIDFTSYEQTQELFNPELSALRSEQTMQES- 298 Query: 296 RSETSQPESAVTVEQNMPHV--------SDRKVPLPRSLENTDKKEE----------QSN 337 R+ +++ N P + ++ P +L ++ N Sbjct: 299 RNASNEASGVPGTLSNTPQPNSSLGQKNNPQQNATPNNLPQQTSSDQMQAKDVRMQTTKN 358 Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSAD-QGKIDSYLAEINKIVSAAT 396 +E++ T + ++RLS+AV+V+ + + + + + +I +VS A Sbjct: 359 FELDKTISHTKNQPGTIKRLSVAVLVDNRPVMNDKTKKLEKKPLTKEEIEQIKLLVSDAI 418 Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456 G+N +RGD++ + + F++ + + + F +VI + G L + + Sbjct: 419 GLNVKRGDSLNVINSSFVKPDPIEAIPEEHFWQ---KDSFWSVIKQ---IGGALFILAIL 472 Query: 457 LHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ 516 LR + N +D + + + L Sbjct: 473 FGVLRPMLK----------------------------TLASNKDMDQATDNQDTGDFTLD 504 Query: 517 SRINSYVSKQSDLR---LLHMIEINEERFAKILRKWA 550 +I+ + + + L +++ +R A++++ W Sbjct: 505 GKISFRDVQDYETQLSLLRQVVDKEPKRVAQVVKSWV 541 >gi|94500269|ref|ZP_01306802.1| flagellar M-ring protein [Oceanobacter sp. RED65] gi|94427568|gb|EAT12545.1| flagellar M-ring protein [Oceanobacter sp. RED65] Length = 577 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 118/561 (21%), Positives = 229/561 (40%), Gaps = 39/561 (6%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + L R + L + L + + Y L LE + I Sbjct: 39 INPIMMGFNKLTIVRQVALLIGFAGILALGIGVIIWSQEVTYRPLISNLEDYNAKEILQT 98 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L E ID+RI+ ++VP + + AR+ LA + + G EL D+ G + F+ Sbjct: 99 LDEKGIDYRINPTTGIVTVPEAEIHDARLALAPI-VAEIDTTVGLELLDQEQGLGTSQFI 157 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI--NPSV 184 + R LEGE+ARTI S+ + ARVH+ +P F + P ASV + Sbjct: 158 ESARYRRGLEGELARTIASLQSVRNARVHLALPKQSVFVRDDREPRASVFLEIYGGKGLK 217 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIE 242 + AEAI +L+A+++P L + +VT++D G LL+ + E + K + +++ + Sbjct: 218 REQAEAIINLIASSIPELPVENVTLVDQKGNLLSKEGQDEEDLLATKQFDYTRKVENSLH 277 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 + + L LG DNF++ V A+++ + + +++PD RS + + + Sbjct: 278 QRVQRILEPVLGSDNFQAEVSADVDFTMVEQTQELFNPDLIALRSEQTLNQEKVEKP--E 335 Query: 303 ESAVTVEQNMPHVSD------RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 N P + + P + K E NYE++ T H +L R Sbjct: 336 GGIPGALSNQPPGAAEVPEEVDENGNPVAQPIERKSEATRNYEVDRTLSHTQHQVGRLRR 395 Query: 357 LSIAVVVNKG-RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 L+++V VN ++ G ++ L + +V + G N+ RGD++++ + FL Sbjct: 396 LTVSVAVNDREKVNPETGVVESVPWTEAELKRLELLVKDSVGFNAARGDSVSVVNSLFLG 455 Query: 416 NQLFNSG---TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 + Q F +I+ + ++ L + L +R + + +G Sbjct: 456 GAVELGEPDFWKQPWFWEIVKQ-----------VLAGLFLLILIFGVIRPIVK-NLIDRG 503 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSH-SRNLQSRINSYVSKQSDLRL 531 ++ + + L +D + L +++ + S + ++++ L Sbjct: 504 KMDEVAEIEGELDELGDGDDLFGDDKVTLAGADEFLLPGASEGFERQLDA---------L 554 Query: 532 LHMIEINEERFAKILRKWARS 552 +I + R A+ +KW Sbjct: 555 KGLIAEDPARVAQSFKKWVND 575 >gi|331005205|ref|ZP_08328599.1| Flagellar M-ring protein fliF [gamma proteobacterium IMCC1989] gi|330420987|gb|EGG95259.1| Flagellar M-ring protein fliF [gamma proteobacterium IMCC1989] Length = 565 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 118/558 (21%), Positives = 237/558 (42%), Gaps = 27/558 (4%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 + +L R + L + + + A + Y LY L D + I L Sbjct: 22 NLVEGFNNLNLLRQVGLMVALAASVAIGFAVVLWTQEEDYRPLYSNLNQLDSSEIISILE 81 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 + I F++ ++ V + + AR+ LA GLP++ S G+EL DK G + FM+ Sbjct: 82 QNAIQFKVDTKTGALLVSAQDIHTARLKLAEVGLPNTGS-VGFELLDKEQPLGSSQFMEA 140 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS--VYK 186 R LEGE+ARTI S++ + AARVH+ +P F + P ASV + + Sbjct: 141 TRYRRGLEGELARTITSLNAVRAARVHLAIPKRSVFVRDAREPRASVFVELYPGRAITPQ 200 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEMN 244 A+ +LVA+++ L + +VT++D G LL+ E + + + L + ++ +I Sbjct: 201 QVVAMSNLVASSISELSLKNVTIVDQKGNLLSKGEEDPQLVQAAQELEYTREVEKKIISR 260 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 I L +G D FR+ V A+++ + + E +++PD RS + + + Sbjct: 261 IQALLDPIVGGDRFRAEVAAQVDFNQVEQAEEMFNPDLPAIRSEQTVDEQRVGGGVG--G 318 Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERL 357 N P + + +N + + N+E++ T H K+ RL Sbjct: 319 IPGALTNQPPANADAPEIAAGGDNNNAQQSSNSRSQSTRNFELDRTMSYTKHQVGKVRRL 378 Query: 358 SIAVVVNKGRLTEV-LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 S+AVVV+ +T+ G + D+ + ++ +V A G + RGD++ I + FL + Sbjct: 379 SVAVVVDDRLVTDPLTGEQKYETWSDNEIERLSILVRDAVGFSPARGDSVNIINTPFLND 438 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476 +F + F +I ++ L+ L++ L + + ++ + Sbjct: 439 GFNAEEIQAPNFWEEEW--FTALIKPIIGLLIILIMVLGLLRPILKTLARTGSETRDDEE 496 Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQ-DIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 L+ + + + ++ + L + + + + +NS + ++ Sbjct: 497 AQQLAALEAAGLGSFDELSDEAVTLTGTTALSLPGPEESYEQMLNS---------VKGLV 547 Query: 536 EINEERFAKILRKWARSE 553 + R ++++++W E Sbjct: 548 ADDPGRVSQVIKRWINEE 565 >gi|289208337|ref|YP_003460403.1| flagellar M-ring protein FliF [Thioalkalivibrio sp. K90mix] gi|288943968|gb|ADC71667.1| flagellar M-ring protein FliF [Thioalkalivibrio sp. K90mix] Length = 552 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 119/551 (21%), Positives = 222/551 (40%), Gaps = 26/551 (4%) Query: 12 KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71 + + R L L ++ I++ +A ++ P Y L+ ++E + + ALS+A Sbjct: 17 REFNGMPAGRQLALLGMLAGAIVVIVAVLYWAFRPTYVPLFPRMESEEAAEVVQALSQAG 76 Query: 72 IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131 I +++ + VP V +AR+ LA++GLP S + G+EL + G + ++ Sbjct: 77 ISYQVDATTGQVKVPQGDVAEARLQLASEGLPRSG-DVGFELLQEDTGLGTSRMVEGARF 135 Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAE 189 RA+EGE+ART+ S+ + ARVHI + F + +ASV++ Sbjct: 136 HRAMEGELARTVASLDAVERARVHIAQAEQSVFVRDRRPASASVVVHLRGSRSLSDSQVA 195 Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS--LSIVQAIQHEIEMNINK 247 AI HLVA++ L+ VTV+D G+LLT + +R + S LS + ++ I+ Sbjct: 196 AIVHLVASSTSELEAERVTVVDQRGRLLTQDGADRGGMASSDRLSFSREVEQRYAERIHD 255 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVT 307 LA +G D R V A+++ + E +YDP++ RS + +D + P Sbjct: 256 LLAPIVGSDKVRVQVNADIDFSQVERTEELYDPETIALRSEQTREDERTGMDGGPAGVPG 315 Query: 308 VEQNMPHVSDR-----KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 N P P L + NYE++ + + R+S AVV Sbjct: 316 ALTNQPPEGGAVEDPEGEMAPAPLPTSRSANVTRNYEVDRRINHIREAPGGIRRVSTAVV 375 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 V+ G + + L I +V A G + RGDT+ + + F E Sbjct: 376 VDFREQVGEDGATESVARDAEELERIEALVREAVGFSEARGDTLNVVTAPF-EAPAEEMI 434 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482 +V F F ++ L+ L++ + + + + L+ Sbjct: 435 EDEVPFWS--QSWFLEMVKIGAGLLLALILLLTVVRPALKQLMASPPRDRRADQQRALTD 492 Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542 + +A + + +L++ + M+ + +R Sbjct: 493 ESDDDSAGAPAGSQSAVAALTGPKGPDQQEMDLEA-------------VREMVREDPKRV 539 Query: 543 AKILRKWARSE 553 A++++ W + Sbjct: 540 AQVMKTWLGDD 550 >gi|254418232|ref|ZP_05031956.1| flagellar M-ring protein FliF [Brevundimonas sp. BAL3] gi|196184409|gb|EDX79385.1| flagellar M-ring protein FliF [Brevundimonas sp. BAL3] Length = 545 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 140/548 (25%), Positives = 238/548 (43%), Gaps = 12/548 (2%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 F + G R+ + V + +A + LY L++ + I+ AL + Sbjct: 4 FTAALQKFGIGRLAAVLGVAAGVTAVLVAVMLRMGQAPDALLYSNLDLREAGEITTALQQ 63 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 A I + +GS++ V VG AR+ +A +GL +S S GYE+FD + G T F Q++ Sbjct: 64 AGIKYTSKGDGSTVMVNRDDVGTARMLIAGKGLVTSGS-VGYEIFDNQSVLGQTEFQQQL 122 Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS-VYKSA 188 RAL+GE++RTI S+ GI AARVHI MP F PTA+V++ Sbjct: 123 NEQRALQGELSRTIMSMRGITAARVHITMPRREMFTAAAGDPTAAVLVGLGGRDLTPDQV 182 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ-AIQHEIEMNINK 247 AIR+LVA++VPNL VTV D + L A + S + + + +++ I Sbjct: 183 RAIRNLVASSVPNLKPDRVTVADQNNRTLAAGSDDGTFSSASAAETKGNTEAQLQSRIKD 242 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVT 307 + +G+ R V A+++ +E +DPD +V RS + T Q + VT Sbjct: 243 IVEGVVGIGAARVQVTADIDQSRSTTQEQKFDPDGQVVRSTTANGSQSSDTTGQNDGGVT 302 Query: 308 VEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367 N+P + + + E +NYEI+ + TT + ++++L++AV V+ Sbjct: 303 AANNIPGGAPPATTPAGATSAENA--ETTNYEISNTTTTTTKEPGEVKKLAVAVAVDGKW 360 Query: 368 LTEVLGR--SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG-TV 424 G+ + +A+I +V+AA GI+ RGD I + ++ F + G Sbjct: 361 TPAADGKGEPTYAPRTAEEIAQIKSLVAAAAGIDEARGDKIEVINVRFNHDTGIAGGLEG 420 Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPP 484 + S +D +I + V LL+ F L L + + P Sbjct: 421 KSSLLDFSRTDVMRLIELGILAVVALLLIFFVLRPLLKTAGGAAPGAVAAAPAGL----P 476 Query: 485 ISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAK 544 +++ TT + + L + +RI V S ++ ++ + + A Sbjct: 477 VATVTTTVIGADGQPQLVQLPAPNEMDQKIDIARIEGQVKASSVKKVADFVQAHPDEAAG 536 Query: 545 ILRKWARS 552 ILR W Sbjct: 537 ILRNWVAE 544 >gi|218887376|ref|YP_002436697.1| flagellar M-ring protein FliF [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758330|gb|ACL09229.1| flagellar M-ring protein FliF [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 539 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 133/557 (23%), Positives = 243/557 (43%), Gaps = 43/557 (7%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 ++ + F++ + R + +A + + + +F F++N P Y LY L D +R Sbjct: 8 VIQKAKGFWERISISQR---IFIAGLAVAVVAVFFGLVFWMNRPDYRVLYSNLSPEDASR 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + L + +++ GSSI+VP+ V R+ +A +G G+E+FD+V G Sbjct: 65 VVKLLQADKVAYKLESGGSSITVPADKVYDLRLKVAGEG-NLVGQGIGFEIFDQV-KVGQ 122 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T F+Q+I RAL+GE++RTI + +ARVH+V+P F + +P+ SV+++ + Sbjct: 123 TDFVQKINYQRALQGELSRTISEFPNVESARVHLVIPHRSLFIEEQQKPSVSVVLKLRDS 182 Query: 183 SV---YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQA 236 S K +AI +LV AV LD V++ D+TGK+L A + + +I G L Sbjct: 183 SKKLESKDVQAIVNLVVMAVEGLDKYKVSIADTTGKILYAPDEDGSITGMTTTQLDHKLR 242 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 +Q +E I + L LG + V A+L+ + IR+ +YDP+ V RS + S+++QR Sbjct: 243 MQQTLERRIEELLYPVLGAGKIIAKVNADLDFSQRTIRKELYDPEKTVVRSEQRSEESQR 302 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 ++ + + S + +++ +NYEIN + + R Sbjct: 303 GRSNLEAGSPDA-----NFRGDSPTGGASTQEGNRETRTTNYEINKEEQNIVAQVGDISR 357 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 L++AV+V+ G+ A + + I ++V+ A G + RGDTI ++S+ F Sbjct: 358 LTVAVIVDGTYEKGADGQWAFVPRKAEDVERIRQLVANAVGYDRARGDTIEVSSISFGGP 417 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476 + ++ MD R ++NA + Sbjct: 418 DVPQESSLPQLVMDYALRLGKPLLNA-------------------------LLVFLFLVL 452 Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR--LLHM 534 + G M L + + + + + K D++ L M Sbjct: 453 VVRPVVLAMIRPRVEGEMIEGLEGLPEGEERLALIEGDEEVDALDALKKIEDIKAHALQM 512 Query: 535 IEINEERFAKILRKWAR 551 E N ++ I+R W + Sbjct: 513 AEQNMDQAVSIIRSWLK 529 >gi|292489162|ref|YP_003532049.1| flagellar M-ring protein FliF [Erwinia amylovora CFBP1430] gi|292900280|ref|YP_003539649.1| flagellar M-ring protein [Erwinia amylovora ATCC 49946] gi|291200128|emb|CBJ47254.1| flagellar M-ring protein [Erwinia amylovora ATCC 49946] gi|291554596|emb|CBA22238.1| Flagellar M-ring protein FliF [Erwinia amylovora CFBP1430] gi|312173321|emb|CBX81576.1| Flagellar M-ring protein FliF [Erwinia amylovora ATCC BAA-2158] Length = 561 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 136/571 (23%), Positives = 240/571 (42%), Gaps = 55/571 (9%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 + SL + L+L I + +A F+ P Y L+ + D I LS+ N+ Sbjct: 19 AMNSLRNSPKLLLPIAAAAAISVMIALMFWAKEPGYRVLFNNISDEDGGAIVSQLSQMNV 78 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 +RI G +I VP + V + R+ +A QGLP S G+EL D+ FG++ F +++ Sbjct: 79 PYRIDTAGGAIMVPEAQVHEVRMKMAQQGLPKGGS-VGFELLDQE-KFGISQFSEQVNFQ 136 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAEA 190 RALEGE+ARTI+++ I ARVH+ +P F + +PTASV + A Sbjct: 137 RALEGELARTIENLGPIQHARVHLAVPKPSMFVRDQKQPTASVNVTLAQGRALDDGQVTA 196 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALA 250 I HL+++AV L +VT++D G LLT + + + I+ + + I + LA Sbjct: 197 ITHLISSAVSGLPAANVTLVDQRGNLLTQSGTGA-LQTSQVKYTNEIEADYQQRIQRLLA 255 Query: 251 AFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK----VERSIRLSKDAQRSE-------- 298 +G N R+ V A+L+ Q+ + Y P+++ RS + S+ AQ + Sbjct: 256 PLVGDSNVRTQVTAQLDFTQQERTDEQYQPNAEREKMAIRSRQSSQAAQGNGRGSGGVPG 315 Query: 299 --TSQPESAVTV----EQNMPHVSDRKVPLPRS-------LENTDKKEEQSNYEINTKSI 345 ++QP + T N P + + ++ ++ +E +NYE++ I Sbjct: 316 ALSNQPPTPATAPLTKPLNAPAANGKNANNEKTPPAGEVAQPYNNRNDETTNYELDRTLI 375 Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 T ++RLS+AVV+N + LA IN +V A G + +RGD+ Sbjct: 376 HTKTSVGHIQRLSVAVVINHMAQG---AEGKTGPLPAAELARINTLVKEAIGYSEQRGDS 432 Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465 + I + F N + + T+ LV + +G RRL Sbjct: 433 VNIVNSPF--NGVVEEVMPPLWQQQSFQTLIMTLARYLVIAI-------IGWVMWRRLVQ 483 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 + + K + + + L+ ++ + ++ Sbjct: 484 PVWIRHQDTTIKRL-------------ELEKEARKLELEEKNKAAQMSAHAKEKRRTDTE 530 Query: 526 QSDLRLLHMIEINEERFAKILRKWARSEIED 556 + +L + E A ++R+W E + Sbjct: 531 INGQQLRELAEQEPRVIALVMRQWLNKEHKS 561 >gi|297538194|ref|YP_003673963.1| flagellar M-ring protein FliF [Methylotenera sp. 301] gi|297257541|gb|ADI29386.1| flagellar M-ring protein FliF [Methylotenera sp. 301] Length = 551 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 128/568 (22%), Positives = 234/568 (41%), Gaps = 45/568 (7%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 A+++Q + +G + LIL + + + + P Y L+ D Sbjct: 8 ALINQGVNKGGTGLNSQLGNKLILVVAAAAVVAVMVVFWLWSQQPDYRVLFSNYTDKDGG 67 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L + N+ ++ SD+G++I VP+S V +AR+ LA+ GLP N G+E+ + FG Sbjct: 68 AIVAELEKMNVPYKFSDSGTAILVPASQVHQARLKLASDGLPKGG-NIGFEILE-NQKFG 125 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 ++ F++++ RALEGE+ R+IQSI + AR+H+ +P F + PTASV++ Sbjct: 126 VSQFVEQVNFQRALEGELERSIQSIGAVETARIHLAIPKASVFVRDQQSPTASVLLNLRA 185 Query: 182 PSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLSIVQA 236 + A+ HLVA++VPNL +VTV+D G LL+ N+ L + Sbjct: 186 GRSLDAQQVGAVVHLVASSVPNLPAANVTVVDQNGNLLSDTSKKMGANNLDPTQLKYIDD 245 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 IQ I + + +G N R+ AE++ + + +Y P+ K + + S + Sbjct: 246 IQQSIIKRVESIITPIVGAKNVRAEASAEIDFSSLEQAAEIYKPNQKPDDAAIRSLQSNE 305 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLP-------------RSLENTDKKEEQSNYEINTK 343 S TS +A V + + P + ++K +N+E++ Sbjct: 306 SLTSNGGAATGVPGALSNQPPPNATAPITTPAGAAPGATAEAAPVNNQKNTTTNFEVDKT 365 Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403 + ++RL++AVVVN + + G+ + + +IN + A G N RG Sbjct: 366 VRYSQQGMGGIKRLNVAVVVNNMPVVDKKGKVTYRPLTAAEKTQINDLAMQAMGFNKERG 425 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 D +T+ + F V + + AL F+VG +++ + AL + Sbjct: 426 DALTVVNSSFAGEPEEIIPEVPMWKNPETIEYGKD---ALRFIVGIVVLLLIYKRALSPM 482 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 A ++ ++ + G +A +SN Sbjct: 483 LRKLTAPSPKLLNAPGDEDAVVNLSGAEGQAQLAAVAGSNSNLAAA-------------- 528 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551 + + N A ++ W Sbjct: 529 --------KQLAKDNPRMVASVVANWTS 548 >gi|319944162|ref|ZP_08018438.1| flagellar basal-body M-ring protein FliF [Lautropia mirabilis ATCC 51599] gi|319742457|gb|EFV94868.1| flagellar basal-body M-ring protein FliF [Lautropia mirabilis ATCC 51599] Length = 574 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 119/567 (20%), Positives = 231/567 (40%), Gaps = 42/567 (7%) Query: 14 GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73 + + + ++ + ++A + P + LY L + + L + N+ Sbjct: 23 FAQMPAATKIKAGAGVIALGAVAVSAWLWSQQPDWKVLYNNLPDREGGAVIAQLVQMNVP 82 Query: 74 FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 ++ ++ G +I VP++MV AR+ LAAQGLP +S +GYEL +K FG T F + + R Sbjct: 83 YKYTEGGGAIMVPANMVNDARLRLAAQGLP-ASDTTGYELLEK-QRFGTTQFQERLNFQR 140 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAI 191 LEGE+AR+IQS++ + ARVH+ MP F + +P+ASVM+ + + I Sbjct: 141 GLEGELARSIQSLAAVKQARVHLAMPVQSGFLREQQKPSASVMLTLYPGRTLERGQVQGI 200 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQAIQHEIEMNINKALA 250 LVA++VP++ V+V+D GKLL+ + + ++ I+ + I+ LA Sbjct: 201 LALVASSVPDMSPKQVSVVDQYGKLLSDLDGDGSEMNTAQINYRNRIESTLTRRIDDLLA 260 Query: 251 AFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE------------ 298 +G N R+ V A+++ + Y P+ + S+ S Sbjct: 261 PIVGDGNIRAQVAADIDFTQSEATAETYAPNQNPGAAAMRSQQTMASRDGSGASDAAGGV 320 Query: 299 ----TSQPESAVTVEQNMPHVSDRKVPLPRSLEN----TDKKEEQSNYEINTKSIATTHD 350 ++QP + V+ N + R S + + ++E +NYE++ T + Sbjct: 321 PGALSNQPPATVSAPINGAAQATRAAGSASSADGGTGVSTRQESVTNYEVDRTVKVTRNQ 380 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 + RLS+AV+VN+ + G+ + I +V A G ++ RGD++ + + Sbjct: 381 TGTIRRLSVAVLVNQKQTKGDDGKEVSTPLTPLEMQSIEALVKQAVGFSAERGDSVQVVN 440 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 F + V + + F++ L++ + + Sbjct: 441 AAFTKRPEVVDPEVPLWKDPETVSLAKDLGKQFGFVLLALIILMMFIRP----------- 489 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ-SRINSYVSKQSDL 529 + P ++ ++ + L S + L+ + + Sbjct: 490 -----ALQAMKKPAPAAGNNLDAKVDEQLELPSPEGSTKGGVQRLEVNPEQGMGMTIAQH 544 Query: 530 RLLHMIEINEERFAKILRKWARSEIED 556 L + + A ++R W D Sbjct: 545 NALQLARTDPTAVATVVRNWVNGTNPD 571 >gi|310764888|gb|ADP09838.1| Flagellar basal-body M-ring protein [Erwinia sp. Ejp617] Length = 561 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 126/544 (23%), Positives = 225/544 (41%), Gaps = 55/544 (10%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 F+ P Y L+ + D I LS+ N+ +RI G +I VP + V + R+ +A Sbjct: 46 MFWAKEPGYRVLFNNVSDEDGGAIVSQLSQMNVPYRIDTPGGAIMVPEAQVHEVRMKMAQ 105 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 QGLP S G+EL D+ FG++ F +++ RALEGE+ARTI+++ I ARVH+ +P Sbjct: 106 QGLPKGGS-VGFELLDQE-KFGISQFSEQVNFQRALEGELARTIENLGPIQHARVHLAVP 163 Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + +PTASV + AI HL+++AV L G+VT++D G LL Sbjct: 164 KPSMFVRDQKQPTASVNVTLAQGRTLDDGQVTAITHLISSAVSGLPAGNVTLVDQRGNLL 223 Query: 218 TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 T + + + I+ + + I + LA +G N R+ V A+L+ Q+ + Sbjct: 224 TQSGTGA-LQSSQVKYTNEIEADYQQRIQRLLAPLVGDSNVRTQVTAQLDFTQQERTDEQ 282 Query: 278 YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQ------------------NMPHVSDRK 319 Y P+++ E+ S+ + ++ A V N P + + Sbjct: 283 YQPNAEREKMAIRSRQSSQAAQGNGRGAGGVPGALSNQPPTPATAPLTKPLNAPAANGKN 342 Query: 320 VPLPRS-------LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372 ++ ++ +E +NYE++ I T ++RLS+AVV+N Sbjct: 343 ANNEKTPAAGEVAQPYNNRNDETTNYELDRTLIHTKTSVGHIQRLSVAVVINHMAQG--- 399 Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDIL 432 + LA IN +V A G + +RGD+I I + F + Sbjct: 400 AEGKPGPLPAAELARINTLVKEAIGYSEQRGDSINIVNSPFNGVAEEVMPPLW------- 452 Query: 433 SRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTG 492 + ++ L L++ +G RRL + + K + Sbjct: 453 --QQHSFQTLMMTLARYLVIAIIGWVMWRRLVQPVWIRHQDTTIKRL------------- 497 Query: 493 LMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 + + L+ ++ + ++ + +L + E A ++R+W Sbjct: 498 ELEKEARKLELDEKNNAAEMTAHAKAKRRTDTEINGQQLRELAEQEPRVIALVMRQWLNK 557 Query: 553 EIED 556 E + Sbjct: 558 EHKS 561 >gi|330502763|ref|YP_004379632.1| flagellar MS-ring protein [Pseudomonas mendocina NK-01] gi|328917049|gb|AEB57880.1| flagellar MS-ring protein [Pseudomonas mendocina NK-01] Length = 594 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 126/591 (21%), Positives = 242/591 (40%), Gaps = 65/591 (10%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + R L L + + + A + P Y LY L D ++ L Sbjct: 25 LSFLENLAEMSVLRQLGLLVGLAASVAIGFAVVLWSQQPDYRPLYGSLNGMDATQVVETL 84 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + + ID+ I N ++ V + + +AR+ LAA G + ++ G+E+ D+ G + FM+ Sbjct: 85 TASGIDYTIEPNSGALLVKADDLARARMRLAAAGAAPTDTSVGFEILDREQGLGTSQFME 144 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 R LEGE+ART+ S++ + AARVH+ MP F + +P+ASV++ + Sbjct: 145 ATRYRRGLEGELARTVASLNNVKAARVHLAMPKASVFVRDERKPSASVLVELYPGRALEP 204 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIEM 243 AI +LVA +VP LD G VTV+D G LL+ + E + GK + ++ Sbjct: 205 SQVMAIVNLVATSVPELDKGQVTVVDQKGNLLSDQQELSELTMAGKQFDYTRRMEGLFTQ 264 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 ++ L LG +++ V A+++ + + +++PD RS + + ++S + P+ Sbjct: 265 RVHNILQPVLGTGRYKAEVSADVDFSSVESTSEMFNPDQPALRSEQQVNEQRQS-SLPPQ 323 Query: 304 SAVT--------------------------------VEQNMPHVSDRKVPLP--RSLENT 329 V+ N + D P Sbjct: 324 GVPGALSNQPPGPAAAPQQAAGAAAPAGPVAAGQPLVDANGQQIMDPATGQPMLAPYPAD 383 Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLS-IAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 +++ N+E++ T +L RLS VV ++ R+ G + LA Sbjct: 384 KREQSTRNFELDRSISYTRQQQGRLRRLSVAVVVDDQVRVDPATGETTRVPWTADDLARF 443 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALV 444 ++V + G ++ RGD++++ + F + + Q F DI+ + Sbjct: 444 TRLVQDSVGFDASRGDSVSVINTAFTASLGEEIPDIPFYTQPWFWDIVKQ---------- 493 Query: 445 FLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSS 504 ++G L + L LR + N A G + +D ++L Sbjct: 494 -VLGVLFILVLVFGVLRPVLNNITGGGRGKDLAGSGDVELGEMAGLDGELSDDRVSLGGP 552 Query: 505 NQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + S S +++N+ + ++ + R A+++++W S+ Sbjct: 553 QSIMLPSPSEGYDAQLNA---------IKSLVAEDPGRVAQVVKEWINSDE 594 >gi|220925883|ref|YP_002501185.1| flagellar MS-ring protein [Methylobacterium nodulans ORS 2060] gi|219950490|gb|ACL60882.1| flagellar M-ring protein FliF [Methylobacterium nodulans ORS 2060] Length = 541 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 137/543 (25%), Positives = 248/543 (45%), Gaps = 18/543 (3%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 G R+ + +V L + F V+ P LY L + D + + L + + Sbjct: 10 KFGPARLAAMGAVTLTLVGFFAFVILRVSRPEMGVLYADLSMQDASAVIRDLDARGLRYE 69 Query: 76 ISDN-GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134 G +I P + + + R+ LA +GLPS+ GYE+FDK ++F T+F+Q + +RA Sbjct: 70 TRGEMGQTILAPRADLARLRMDLAGKGLPSAGG-VGYEIFDKGDAFSSTTFVQNVNHLRA 128 Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHL 194 LEGE+AR+I++I + AAR+H+V+P+ F + P+A+++++ A+RHL Sbjct: 129 LEGELARSIRAIGRVQAARIHLVIPEKRLFARDREPPSAAIVLKLSGDLDPGQVRAVRHL 188 Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK--SLSIVQAIQHEIEMNINKALAAF 252 VA++V L ++++D G+LL + G+ ++H + + +A Sbjct: 189 VASSVEGLKPDRISIVDERGRLLADGAKPEDAQGRLGLDERQANLEHRLRAQVEGIVAGI 248 Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNM 312 +G R V AEL+ + + R +DP+S+V RS + + Q+S+ E+ V+V + Sbjct: 249 VGSGRARVQVAAELDANRIESRSETFDPESRVVRSTQTRSETQQSQ-GPGETGVSVGNEL 307 Query: 313 PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372 P D + E ++K EE +NYEI+ + ++ ++ RLS+AVV++ Sbjct: 308 PGARD-PAQQNGTREASNKNEETTNYEISRVTRTEINEGGRIRRLSVAVVIDGTYTPGPD 366 Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ---VSFM 429 GR + L I +V A G + RGD I + ++ F E + + SF Sbjct: 367 GRPVYAPRPQDELDRITALVRTAVGYDKARGDQIEVVNLRFAEGPVPAEIPEEGLLASFK 426 Query: 430 DILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAV 489 ++ L+ ++V + LRR+ +D V + P Sbjct: 427 PTKEDVLRLAELGVLALLTLVVVLAVVRPLLRRVIAVDAPPAELVAAGIPVLP------- 479 Query: 490 TTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549 G +P A D+ D + +RIN + ++ R+ ++ N A++LR W Sbjct: 480 --GALPGAAPAEDAPPPDSPAKHLVDFARINGKLQAETIERVADIVRQNPAETAEVLRNW 537 Query: 550 ARS 552 Sbjct: 538 IND 540 >gi|325295413|ref|YP_004281927.1| flagellar M-ring protein FliF [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065861|gb|ADY73868.1| flagellar M-ring protein FliF [Desulfurobacterium thermolithotrophum DSM 11699] Length = 529 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 139/569 (24%), Positives = 241/569 (42%), Gaps = 52/569 (9%) Query: 1 MAILD---QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEV 57 M I + ++ + FK + + IL+L+++ LV + F+A + + Y LY L Sbjct: 1 MNIKEIQTKVQEIFKKNAN-PKNVILLLSALTLVSFLAFIAIK-QSTTEDYAVLYTHLSP 58 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 D I L E +I +++ NGS I VP V R+ LAA+GLP G+ELFD+ Sbjct: 59 DDAGSILSVLQEEHIPYKVEGNGSIILVPKEKVYDIRLKLAAKGLP-HGKVVGFELFDE- 116 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 G+T F + + +RALEGEI RTI+ I+ I +V+I +P F + P AS+++ Sbjct: 117 PKLGITQFQENVEFLRALEGEIERTIKRINAIQDVKVNIALPKDSIFVRESEEPKASILV 176 Query: 178 RAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLS 232 + +AI LV+ AVP L +VTV+D+ G++LT + + K L Sbjct: 177 NLWPGRELTKEQVKAIVFLVSHAVPGLKPENVTVIDNRGRVLTDLLSGNEDETGSSKELE 236 Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292 + + ++ EIE I L+ LG E+ + +E +YDPD S R + Sbjct: 237 VKRKLEKEIERKIQSMLSQVLGSGKVVVRASVEIETGRLEKKEELYDPDMTAVVSERKIQ 296 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 + + + + N+P V + + +KK+ +NY+++ T + Sbjct: 297 EKETGIKPKEQGVPGTTTNVPPVLNLN--QGNEILKKEKKDVTTNYDVSKTIQKTITPIF 354 Query: 353 KLERLSIAVVVNKGRLTEVLGRSAD----QGKIDSYLAEINKIVSAATGINSRRGDTITI 408 K++R+S+ V+V+ E + + + +IV +A G + +RGDT+T+ Sbjct: 355 KIKRISVGVLVDGKYQKEKDKAGNEIIKFVPRSQEEIKTYEEIVKSAIGYDPKRGDTVTV 414 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 S+ F Q Q F I A L+ +LV + L L+ Sbjct: 415 ASVPFEAKQFVQKEKSQKKFP-------WIYIAAGGGLLTLILVGIIALKLLKSKKT--- 464 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 P + LM + + H + I Sbjct: 465 --------------EPQQPEIPETLMAEMKARAEHKEELEELHIESDPLYI--------- 501 Query: 529 LRLLHMIEINEERFAKILRKWARSEIEDR 557 +++ + + + E A ++ KW R E + Sbjct: 502 -KIVEIAKEHPELVANVISKWIREEGISK 529 >gi|259907606|ref|YP_002647962.1| Flagellar basal-body M-ring protein [Erwinia pyrifoliae Ep1/96] gi|224963228|emb|CAX54712.1| Flagellar basal-body M-ring protein [Erwinia pyrifoliae Ep1/96] gi|283477448|emb|CAY73364.1| Flagellar M-ring protein FliF [Erwinia pyrifoliae DSM 12163] Length = 561 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 129/545 (23%), Positives = 224/545 (41%), Gaps = 55/545 (10%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 F+ P Y L+ + D I LS+ N+ +RI G +I VP + V + R+ +A Sbjct: 45 LMFWAKEPGYRVLFNNVSDEDGGAIVSQLSQMNVPYRIDTPGGAIMVPEAQVHEVRMKMA 104 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 QGLP S G+EL D+ FG++ F +++ RALEGE+ARTI+++ I ARVH+ + Sbjct: 105 QQGLPKGGS-VGFELLDQE-KFGISQFSEQVNFQRALEGELARTIENLGPIQHARVHLAV 162 Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 P F + +PTASV + AI HL+++AV L +VT++D G L Sbjct: 163 PKPSMFVRDQKQPTASVNVTLAQGRTLDDGQVTAITHLISSAVSGLPAANVTLVDQRGNL 222 Query: 217 LTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 LT + + + I+ + + I + LA +G N R+ V A+L+ Q+ + Sbjct: 223 LTQSGTGA-LQSSQVKYTNEIEADYQQRIQRLLAPLVGDSNVRTQVTAQLDFTQQERTDE 281 Query: 277 VYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQ------------------NMPHVSDR 318 Y P+++ E+ S+ + ++ A V N P + + Sbjct: 282 QYQPNAEREKMAIRSRQSSQAAQGNGRGAGGVPGALSNQPPTPATAPLTKPLNAPAANGK 341 Query: 319 KVPLPRS-------LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV 371 ++ ++ +E +NYE++ I T ++RLS+AVV+N Sbjct: 342 NANNEKTPAAGEVAQPYNNRNDETTNYELDRTLIHTKTSVGHIQRLSVAVVINHMAQG-- 399 Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDI 431 + LA IN +V A G + +RGD+I I + F + Sbjct: 400 -AEGKPGPLPAAELARINTLVKEAIGYSEQRGDSINIVNSPFNGVAEEVMPPLW------ 452 Query: 432 LSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTT 491 + ++ L L++ +G RRL + + K + Sbjct: 453 ---QQHSFQTLMMTLARYLVIAIIGWVMWRRLVQPVWIRHQDTTIKRLELEKEAR----- 504 Query: 492 GLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWAR 551 +ALD N + R ++ + +L + E A ++R+W Sbjct: 505 ------KLALDEKNNAAEMTAHAKAKR--RTDTEINGQQLRELAEQEPRVIALVMRQWLN 556 Query: 552 SEIED 556 E + Sbjct: 557 KEHKS 561 >gi|298530643|ref|ZP_07018045.1| flagellar M-ring protein FliF [Desulfonatronospira thiodismutans ASO3-1] gi|298510017|gb|EFI33921.1| flagellar M-ring protein FliF [Desulfonatronospira thiodismutans ASO3-1] Length = 532 Score = 388 bits (998), Expect = e-105, Method: Composition-based stats. Identities = 132/555 (23%), Positives = 246/555 (44%), Gaps = 36/555 (6%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + +++ + S + R +++A + L I F FF+ P Y L L D +R Sbjct: 8 LQEKVTSLWSSSSVPQR---ILVAGLGLSVIAAFAFLMFFITRPDYRVLSSDLYPEDASR 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + L N+ +++ D+G++I VP+ V K R+ ++ +G+ G+ELFD G Sbjct: 65 VVEILESENVRYQLEDDGTTILVPADQVHKMRLAISGEGVLR-GEGMGFELFD-DTGIGQ 122 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T F+Q + RAL+GE+ARTI S + ARVH+VMP+ F + P+AS++++ + Sbjct: 123 TDFVQNVNYQRALQGELARTISEFSEVEHARVHLVMPERSLFIEEETPPSASIVLQLRSG 182 Query: 183 SVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQ 238 + ++I +LV V +D VT+ D++G++L + + + L Q Sbjct: 183 QRLESSQIQSIVNLVVTGVEGMDSDRVTISDTSGRVLYEPQKDLLDGMSSTQLEYQLNFQ 242 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 ++E I L F G + V A+L+ D + R+ ++DPD V RS + S + Sbjct: 243 RDLERRIEHMLTPFAGPGRVIAKVNADLDFDRRTTRQEIFDPDGSVVRSEQRSTEESSGG 302 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 T E + P + + T + + +N+EI+ + ++RLS Sbjct: 303 TFMEEGVPE------PDFQQGFEGPATTQETSRSDRTTNFEISREEHNIVASVGSVDRLS 356 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 +AV+V+ +T+ G + D + I ++V A G + RGD+I ++S+DF ++ Sbjct: 357 VAVLVDGQHVTDDAGEMVYEPLADEEMQRIQQLVERAVGFDQERGDSIEVSSVDFGAPEV 416 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 + + MD L+++F T L+ + LL L + + + E Sbjct: 417 ----EPEPTLMDNLAQYFQTFGKPLLNALLVLLFLLLVVRPIIMTILKPKVAEEEGEEAE 472 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 L A+ G+ + + Q R+ S + E N Sbjct: 473 GLPEGGEREALAPGMSEEEVEGM------------QDQKRVEGIKVFAS-----QLAEEN 515 Query: 539 EERFAKILRKWARSE 553 ++ +++KW + E Sbjct: 516 FDQAFAVVKKWLKEE 530 >gi|317406225|gb|EFV86471.1| flagellar M-ring protein FliF [Achromobacter xylosoxidans C54] Length = 558 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 128/552 (23%), Positives = 215/552 (38%), Gaps = 77/552 (13%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + + P Y L+ L+ D I AL N+ ++ +D G+++ VP+ V AR+ LA+Q Sbjct: 45 MWSSEPKYKVLFSNLDDRDGGAIVTALGTMNVPYKYNDTGTALLVPADRVYDARLQLASQ 104 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S G+EL D FG + F ++I R LEGE+AR+I+S+ + ARVH+ MP Sbjct: 105 GLPRGGS-VGFELMDNA-RFGASQFAEQINYQRGLEGELARSIESMHTVQHARVHLAMPR 162 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + PTASV++ AI LVA++VP L +V+++D G+LL+ Sbjct: 163 QSLFVRERQPPTASVLLNVYPGRSLSDAQVSAISWLVASSVPELTAENVSIVDQNGRLLS 222 Query: 219 ANEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 A E R + + +V+ + I L +G N + AE++ ++ V Sbjct: 223 APTGEGRGMDADQMRMVRETEQRTVERILTILNPLVGPGNVHAQASAEMDFSRREETSEV 282 Query: 278 YDPDSK----VERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN----- 328 Y P+ + RS + S+ QR + + N P + + Sbjct: 283 YRPNQEPGQAAIRSQQTSESNQRG-INPAQGVPGALSNQPPANAQAPIANPPQTQPPRPG 341 Query: 329 --------------------------TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 +D+++ +NYE++ L+RLS+AVV Sbjct: 342 QPQQQGQQQQQQTATGAGAQGAGGTVSDRRDATTNYEVDRTISHIKQPVGMLKRLSVAVV 401 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 VN R + Q L+++ +V A G + RGD++ + + F + Sbjct: 402 VNYVRDKDGE----PQALPPEELSKLTNLVREAMGYSESRGDSLNLVNSQFNDGPPAVPM 457 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482 + + L +LVG +L +L R Sbjct: 458 WRDPEMISLFK-------TILAWLVGGVLALWLYRKVRR--------------SVGDYLY 496 Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542 PP+ V + I QD+ + + N R M + Sbjct: 497 PPVDPEVAEA----ERIEAQREAQDLARAKETDRYQDNLE-------RARTMANKDPRAV 545 Query: 543 AKILRKWARSEI 554 A +LR W + Sbjct: 546 AMVLRTWMTKDE 557 >gi|149194458|ref|ZP_01871555.1| flagellar M-ring protein [Caminibacter mediatlanticus TB-2] gi|149135633|gb|EDM24112.1| flagellar M-ring protein [Caminibacter mediatlanticus TB-2] Length = 559 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 141/569 (24%), Positives = 253/569 (44%), Gaps = 33/569 (5%) Query: 2 AILDQLLQFFKSGTSLGR--TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 AI Q++ FF + I++ V+++ ++ + +Y L+ L+ D Sbjct: 5 AIFKQIIDFFNQLNKKQKYIIIGSIISVVLIITFLIVYNSSTTKKESNYAILFENLKPQD 64 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I L + I ++I +NG I VP +VGK R+ +AAQGLP SS G+E+FDK NS Sbjct: 65 AALIVQYLDKKQIPYKIPENG-IIEVPKDIVGKVRLDVAAQGLPKSSK-VGFEIFDK-NS 121 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 FG T F Q + +RALEGE+A+TI+SI+ + A+V+I +P F + PTAS++I+ Sbjct: 122 FGATDFEQRVKYLRALEGELAKTIESIAAVEEAKVNIAIPKESVFVENQTPPTASILIKL 181 Query: 180 INPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLSIV 234 K E I+ LVAAAVP L +V ++D G L N +L L Sbjct: 182 RPNMTLTPKQIEGIKWLVAAAVPKLKPENVKIVDQYGNPLGENSEAVANSELLKAELLYK 241 Query: 235 QAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293 + ++ +E I+ +A +G N + V +++ + + +Y PD+ V L + Sbjct: 242 KRLEKALEDKISSLIAPIVGGKNKVVAKVSLDIDFSKVKSKATIYSPDNVVRSEQTLEES 301 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 + + N+ V K + ++ +K E +NYEI+T D K Sbjct: 302 RIGIKPKEVGGVPGAVSNIGPVQGTK--NNQIVDKYNKTETTTNYEISTTIKDIKDDYPK 359 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 ++R++ AVVV+ + G+ + + I +V A GI+ +RGD+++++S F Sbjct: 360 IKRITAAVVVDGYYKKDKDGKIKFVPLSEMQIKSIENLVKNAIGIDPKRGDSVSVSSFQF 419 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 + T M ++S + + +L +++ + Sbjct: 420 NQPTSNAPQTPVGKVMSMVSMYLGPFESIFKYLFLAIVLFVFYKKVINPFTQK------- 472 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR--INSYVSKQSDL-- 529 +L P + D ++S+ I ++ + I+ ++++ Sbjct: 473 -----MLETPVKEEEPIKEEIHIDEEEIESTYDKIKELKEKVEQQLGISGEINEEELKYE 527 Query: 530 ----RLLHMIEINEERFAKILRKWARSEI 554 R+ M+E N E+ AK+L + E Sbjct: 528 VLLERVTKMVEDNPEQVAKVLENLLKEEH 556 >gi|121997300|ref|YP_001002087.1| flagellar M-ring protein FliF [Halorhodospira halophila SL1] gi|121588705|gb|ABM61285.1| flagellar M-ring protein FliF [Halorhodospira halophila SL1] Length = 595 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 133/555 (23%), Positives = 234/555 (42%), Gaps = 34/555 (6%) Query: 21 RILILASVILVPIMLFMAARFFVNSP-HYDNLYVKLEVSDVNRISVALSEANIDFRISDN 79 R L L + +L L +A F+ P LY L D + AL E + + Sbjct: 59 RKLGLGAGLLAVAGLGVAIFFWAQEPAELRTLYADLSSDDAAEVINALEEQGVRVEFDER 118 Query: 80 GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEI 139 I VP + V +ARI LA++GLP S GYE+ + FG++ FM+ RALE E+ Sbjct: 119 TGDIKVPENAVHRARIFLASEGLPRGSG-FGYEMLEDDPGFGVSEFMEHARFDRALETEL 177 Query: 140 ARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAA 197 AR+I+++ G+V+ARVH+ P F + ASV++ + E I HLVA+ Sbjct: 178 ARSIETLRGVVSARVHLDDPQESVFVRDRRDAKASVVLELDQDRQLPDRQVEGIIHLVAS 237 Query: 198 AVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255 AV +L+ G+V+V+D G+LLTA + E + + + ++ I+ + + +G Sbjct: 238 AVSDLEHGNVSVVDHRGRLLTAEDEPTEATRSAQQFELTRRLEERIQRRVEDMVEPIIGP 297 Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV 315 D R+ V A LN D ++ E ++DP+S RS ++S+ + +P Sbjct: 298 DRVRAQVSARLNFDERRQIEELFDPESSAIRSEQMSERS--------GGGGQWPIGIPGA 349 Query: 316 SDRKVPLPRSLENTD---------KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 + P P +L+ + +E N+E+ ++RL++ V+V+ Sbjct: 350 LTNQPPGPGTLDGEELEGGGGTPFSSDETRNWEVGRTLSEVQPAIGVIDRLTVGVLVDHR 409 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 + G + D + + +V A G ++ RGD +++ ++ F E +V Sbjct: 410 YVQNEDGEVVREALSDEEIQTLENLVQDAVGYDADRGDAVSVATVPFAEIVEPPDPPEEV 469 Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK--SILSPPP 484 + + + A +G L+ + R+ +D E GG L P Sbjct: 470 WEQEWVRDLIRLAVFA---AIGLLIYIVAIRPIVNRMLGGEDELDEESGGAETEGLERPA 526 Query: 485 ISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAK 544 S + G AL + S + + + +L ++E E A Sbjct: 527 GESLASPGRGQEGEAALQLAGISGEQLSDMRERPYEAKLQA-----VLELVENEPELAAN 581 Query: 545 ILRKWARSEIEDRYT 559 ++ W E + R Sbjct: 582 AVKAWL-DEDDKRKG 595 >gi|89899361|ref|YP_521832.1| flagellar M-ring protein FliF [Rhodoferax ferrireducens T118] gi|89344098|gb|ABD68301.1| flagellar M-ring protein FliF [Rhodoferax ferrireducens T118] Length = 588 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 132/566 (23%), Positives = 236/566 (41%), Gaps = 47/566 (8%) Query: 12 KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71 + + L + + L + ++V + + + + LY L D I L+ N Sbjct: 43 QRFSGLDQGQRLRMGLGLVVFVAIGIIGLMMGRQAEWRVLYANLADKDGGAIVAQLTTMN 102 Query: 72 IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131 + ++ +D G +I VP+ V R+ LA+QGLP + +G+E D N FG+T F + + Sbjct: 103 VPYKYADGGGAILVPADKVYDTRLRLASQGLPK-GAVAGFETMDA-NRFGMTQFQERLAF 160 Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-- 189 R LEGE+ R+IQ++S + +ARVH+ +P+ F + +P+ASV++ A+ Sbjct: 161 QRGLEGELTRSIQALSSVQSARVHLALPNQNGFFREQQKPSASVLVSLNAGRTLDRAQLA 220 Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN----EMERNILGKSLSIVQAIQHEIEMNI 245 I HLV+++VP ++ V+VLD +GKLL+ + + L VQ ++ I Sbjct: 221 GIVHLVSSSVPEMNASAVSVLDDSGKLLSTPPEGADGAGGGDAQQLQYVQQLEQLYSRRI 280 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305 L +G N R+ V AEL+ + + P+ + S S+ SE+S Sbjct: 281 LDILEPVVGRGNARAQVTAELDFSQTESTSESHKPNQTPDSSAIRSQQV--SESSNGSGI 338 Query: 306 VTVEQNMPHVSDRKVPLPRSLENT------------------DKKEEQSNYEINTKSIAT 347 +P + K P P S ++E NYE++ Sbjct: 339 SGPPSGVPGATSNKPPGPSSAPINGAPQTLTAAGAGASAGAGGRRESIINYEVDKTVKVV 398 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 ++R+S AVVVN +T+ G++ + ++ +V G N RGD++ Sbjct: 399 RGGTGIVKRISAAVVVNHQSVTDAKGKTTTTPLSAQQIEQMTALVRETVGFNKERGDSVN 458 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + + F ++ V + F + +L + +GTLL L L + R Sbjct: 459 LMNAPFTTERVV---PVDLPFWK--QSEIQDLARSLAWPLGTLLFGALVLLGVIRPALKT 513 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 A+ P SA + L ++ A + + + S L + ++ Sbjct: 514 LAQS-----------QPRISASSHQLNAIESEAPERAQLAAPARSSELAGPTSGELALDD 562 Query: 528 DLRLLHMIEINEERFAKILRKWARSE 553 +L N A I++ W E Sbjct: 563 ARKLTR---DNPAAVANIVKTWINGE 585 >gi|94269516|ref|ZP_01291482.1| Flagellar FliF M-ring protein [delta proteobacterium MLMS-1] gi|93451190|gb|EAT02103.1| Flagellar FliF M-ring protein [delta proteobacterium MLMS-1] Length = 511 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 132/543 (24%), Positives = 238/543 (43%), Gaps = 41/543 (7%) Query: 20 TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN 79 ++ + V+ + +A L+ L D + L E NI +R+SD Sbjct: 2 SQKITAGVVVALVFGGLVAMTTMAPKLDEQVLFANLSQEDAAEVVERLREMNIPYRLSDT 61 Query: 80 GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEI 139 G++I VPS+ V + R+ LA +GLP G+E+FD+V G T F+ + RAL+GE+ Sbjct: 62 GNAIMVPSNQVHETRLALAGEGLPRGGG-VGFEVFDEV-GLGTTDFVNRLNLQRALQGEL 119 Query: 140 ARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAA 197 ARTI+ I ARVHI P F + TASV +R ++I +LV+ Sbjct: 120 ARTIRQFEQIQEARVHIATPRESVFIEDEKPVTASVSLRMRGRDQLSQHQIQSIVNLVST 179 Query: 198 AVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255 AVP L +T++D+ G+LL ++ + G L Q I+ + L +GV Sbjct: 180 AVPGLSDESITLVDTAGRLLYRKRGDIGPVLSGSQLEYQQNIEESARRKVESMLEEVVGV 239 Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV 315 + R++V A+++ + + E ++DP+ +V RS ++ +A + +Q + + Sbjct: 240 NRVRASVTADIDFNRVNLTEEIFDPEEQVVRSEQVITEADQ-RGNQARGIPGAKGELATF 298 Query: 316 SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG--RLTEVLG 373 +D S + + + NYEI+ ++ T ++RLS+AV+V+ R+T+ G Sbjct: 299 ADEGGGGADS--SYQRSDVTRNYEISRQTRQTQEMGGGIQRLSVAVMVDGTYERVTDEEG 356 Query: 374 RSADQ--GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDI 431 R+ + + + + +++S A G N RGD + + SM F + + + Sbjct: 357 RTTMEYRPRSEEEMEYFERLISNAVGYNRDRGDQVEVVSMPFALSAITEPEEDPMDRWRE 416 Query: 432 LSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTT 491 +++ A + L+ G +L + RL D L S T Sbjct: 417 MAQWLAMPLVYLLIAFGVML---FVVRPFLRLLAAKD-----------LEAKRASQRATV 462 Query: 492 GLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWAR 551 G + D+ R L + R+ + + + +R A ++R+W R Sbjct: 463 GRAEGEA----EDEDDLSMGPRGLSDQ----------ERIYRLAQSDPDRAADLVRRWLR 508 Query: 552 SEI 554 E+ Sbjct: 509 EEV 511 >gi|253996299|ref|YP_003048363.1| flagellar M-ring protein FliF [Methylotenera mobilis JLW8] gi|253982978|gb|ACT47836.1| flagellar M-ring protein FliF [Methylotenera mobilis JLW8] Length = 546 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 125/532 (23%), Positives = 225/532 (42%), Gaps = 53/532 (9%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 + P Y L+ D I AL + N+ ++ SD+G++I VP++ V + R+ LAA Sbjct: 41 WLWSQQPDYRVLFSNYSDKDGGAIVAALEKLNVPYKFSDSGTAIMVPAAQVHQVRLKLAA 100 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 GLP N G+EL + FG++ F++++ R LEGE+ R+IQSI+ + AR+H+ +P Sbjct: 101 DGLPKGG-NIGFELLE-NQKFGVSQFVEQVNFQRGLEGELERSIQSIAAVEVARIHLAIP 158 Query: 160 DMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + +PTASV++ + A+ HLVA++VPNL +VTV+D G LL Sbjct: 159 KPSVFVRDQQKPTASVLLNLRPGRTLDAQQVSAVVHLVASSVPNLPTTNVTVVDQNGNLL 218 Query: 218 TANE---MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 + +N+ + L V+ IQ I + ++ +G N R+ AE++ Q+ Sbjct: 219 SDTTKKMGAKNLDPEQLKYVEEIQQSIVKRVESIISPIVGAKNVRAEASAEIDFSVQEQA 278 Query: 275 EIVYDPDSK----VERSIRLSKDAQRSETSQPESAVTVEQNMPH------------VSDR 318 Y P+ + RS++ ++ +S + N P Sbjct: 279 AETYKPNQQPDAAAVRSMQSNET--KSANGETAGVPGALSNQPPPAATAPITTEANADAN 336 Query: 319 KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTE-VLGRSAD 377 P + +K +NYE++ ++RL++AVVVN + + G+ + Sbjct: 337 GQPASNATPTNTEKNLTTNYEVDKTVSYRQQPMGGVKRLNVAVVVNNMPVVDKKTGKVSY 396 Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437 + + +IN + A G N RGD++ I + F + + R Sbjct: 397 RALTVAEKTQINDLAMQAMGFNKERGDSLAIVNTPFAGEPQEVLPAIPLWENP---RVIE 453 Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497 V + L F VG + + + L+ L N P +AV G P+ Sbjct: 454 NVKDVLRFAVGVIALLIIYRKVLKPLLNK--------------LTTPPKAAVNQGEAPDA 499 Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549 +++ + + + +I + + + N A ++ W Sbjct: 500 VVSISADGSN-AAEKPAYTQKIETA---------KQIAKDNPRMVASVVANW 541 >gi|224373126|ref|YP_002607498.1| flagellar MS-ring protein [Nautilia profundicola AmH] gi|223589285|gb|ACM93021.1| flagellar M-ring protein FliF [Nautilia profundicola AmH] Length = 561 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 140/568 (24%), Positives = 244/568 (42%), Gaps = 33/568 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVN----SPHYDNLYVKLEVS 58 + Q++ F K+ R +I+I+++++ + ++ F Y L+ L Sbjct: 6 LFKQIIAFTKNLNK--RQKIVIISAIVALVAIISFLVVFNTTSSKTKTGYAILFDNLSSK 63 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 D I L + I + I ++G I VP +V K R+ +AAQGLP SS G+ELFDK N Sbjct: 64 DAALIVQYLDKKQIPYVIPEDG-VIEVPKDVVQKIRLDVAAQGLPKSSK-VGFELFDK-N 120 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178 SFG+T F Q++ +RALEGE+ RTI+S+ + +A V+I +P F + PTASV+I+ Sbjct: 121 SFGITDFEQKVKYLRALEGELGRTIESLDAVESATVNIAIPKDSVFVEKQTPPTASVVIK 180 Query: 179 AINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLSI 233 V K + I++LVAAAVP + +V ++D G LL N+ +L + Sbjct: 181 LKPNMVLTPKQIQGIKYLVAAAVPKMKPENVKIIDQYGNLLGENDELTQNNELLKAEIIY 240 Query: 234 VQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292 + ++ +E I LA +G N + V +++ + + +Y PD+ V L + Sbjct: 241 KKRMEKALEDKIVSILAPVIGGKNKVVAKVNLDIDFSQVKSKSTIYSPDNVVRSEQTLEE 300 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 + + N+ V K + K + +NYEI+T Sbjct: 301 SRTGYKPKEVGGVPGAVSNVGPVQGTK--SNEVKDKYTKSQTTTNYEISTTVKDVKEPLA 358 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 K++R++ AVVV+ + G+ L I +V G + +RGD+++++S Sbjct: 359 KIKRITAAVVVDGHYKEDKDGKKEFVPLTKLELTNIENLVKNTIGYDPKRGDSVSVSSFQ 418 Query: 413 FLENQLFNSGTVQVS-FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 F N N T V M + + + L +L +++ + K Sbjct: 419 FTGNSANNEPTSAVGKVMQSVQMYLGPISGILKYLFLAIVLFVFYKKVITPFTQKMLEVK 478 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL-- 529 E + + I+ + + Q I+S V+++ Sbjct: 479 IEEEPEYVKPDIEIN---------EEEVESTYDKIKELKEKVEQQLGISSDVNEEELKYE 529 Query: 530 ----RLLHMIEINEERFAKILRKWARSE 553 R++ M E E AK+L + E Sbjct: 530 VLLDRIVKMAEEKTEEVAKVLENLIKEE 557 >gi|311105960|ref|YP_003978813.1| flagellar M-ring protein FliF [Achromobacter xylosoxidans A8] gi|310760649|gb|ADP16098.1| flagellar M-ring protein FliF [Achromobacter xylosoxidans A8] Length = 553 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 123/546 (22%), Positives = 214/546 (39%), Gaps = 70/546 (12%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + + P Y L+ L+ D I AL N+ +R ++ G+++ VP+ V AR+ LA+Q Sbjct: 45 MWSSEPKYKVLFSNLDDRDGGAIVAALGTMNVPYRYNETGTAVLVPADRVYDARLQLASQ 104 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S G+EL D FG + F ++I R LEGE+AR+I+++ + ARVH+ MP Sbjct: 105 GLPRGGS-VGFELMDNA-RFGASQFTEQINYQRGLEGELARSIEAMHTVQHARVHLAMPR 162 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + PTASV++ AI LVA++VP L +V+++D G+LL+ Sbjct: 163 QSLFVRERQAPTASVLLNMHPGRSLSDAQVSAISWLVASSVPELTAENVSIVDQNGRLLS 222 Query: 219 ANEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 A E R + + V+ ++ I L +G N + A+++ ++ V Sbjct: 223 APMGEGRGMDADQMRFVREMEQRTVERILTILNPLVGPGNVHAQASADVDFARREETSEV 282 Query: 278 YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLP-------------- 323 Y P+ + ++ S+ S +A V + + + P Sbjct: 283 YRPNQEPGQAAVRSQQTSDSSQRGVNAAQGVPGALSNQAPANPQAPIANPPQPQPPRPGQ 342 Query: 324 ---------------RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368 + ++++ +NYE++ L+RLS+AVVVN R Sbjct: 343 PQQPANAQQQTSTQAATGNLNERRDATTNYEVDRTISHIKQPVGNLKRLSVAVVVNYMRD 402 Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSF 428 + Q L ++ +V A G + RGD++ + + F + Sbjct: 403 KDGE----LQPLPPEELNKLTNLVREAMGYSEPRGDSLNLVNSQFNDGPPPVPMWRDPEM 458 Query: 429 MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSA 488 + + L +LVG +L +L LRR L PP Sbjct: 459 ISLFK-------TILAWLVGGVLALWL-YRLLRRTVG------------DYLYPPVDPEQ 498 Query: 489 VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRK 548 + A D++ ++ + R M + A +LR Sbjct: 499 AEAERVEAAREAQDAARAKEVDRYQD------------NLERARTMANKDPRAVAMVLRT 546 Query: 549 WARSEI 554 W + Sbjct: 547 WMSKDE 552 >gi|170743231|ref|YP_001771886.1| flagellar MS-ring protein [Methylobacterium sp. 4-46] gi|168197505|gb|ACA19452.1| flagellar M-ring protein FliF [Methylobacterium sp. 4-46] Length = 539 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 132/542 (24%), Positives = 246/542 (45%), Gaps = 18/542 (3%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 G R+ + +V LV + F V+ P LY L + D + L I + Sbjct: 10 KFGPARLAAMGAVTLVLVGFFAFVILRVSRPELGVLYADLSLQDAGAVIRDLEARGIRYE 69 Query: 76 ISDN-GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134 + G +I P + + + R+ LA +GLPS+ GYELFDK ++F T+F+Q + +RA Sbjct: 70 TRGDLGQTILAPRADLPRLRMDLAGKGLPSAGG-VGYELFDKGDAFSTTTFVQNVNHLRA 128 Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHL 194 EGE+AR+I++I + AARVH+V+P+ F + P+A+++++ A+RHL Sbjct: 129 QEGELARSIRAIGRVQAARVHLVIPEKRLFNRDRELPSAAIVLKLAGDLDPGQVRAVRHL 188 Query: 195 VAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKALAAF 252 VA++V L ++++D G+LL A + + +++ + + +A Sbjct: 189 VASSVEGLKPERISIVDERGRLLADGAGRDDAQAVLGLDERQASLEQRLRAQVEGIVAGI 248 Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNM 312 +G R V AEL+ + R +DP+S+V RS + + S+ E+ V+V + Sbjct: 249 VGAGRARVQVAAELDPSRIESRSESFDPESRVVRSSQTRSETSASQ-GPGETGVSVGNEL 307 Query: 313 PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372 P + + E ++K EE +NYEI+ + ++ +++RLS+AVV++ Sbjct: 308 PGARE-TAQANGTRETSNKNEETTNYEISRVTRTEVNEGGRIKRLSVAVVIDGSYQPGPD 366 Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDIL 432 G+ + L I +V A G + RGD + + ++ F + + + +L Sbjct: 367 GKPVYAPRSQEELDRITALVRTAVGYDKGRGDQVEVANLRFADTAVPAELPEEGLLASLL 426 Query: 433 SRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTG 492 V+ + V LL + L +R L + PP + Sbjct: 427 KPTKEEVLRLVELAVLALLTLVVVLAVMRPLLRRVLPAEA----------PPEPALAAVA 476 Query: 493 LMPNDNIALDSSNQDIFSHSRNLQ--SRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 ++P + + S +R L ++IN + ++ R+ ++ N A++LR W Sbjct: 477 VLPAAGAEGEGAPALPESPARQLVEFAKINGKIQAETIARVAEIVRQNPVETAEVLRGWI 536 Query: 551 RS 552 + Sbjct: 537 QD 538 >gi|114330758|ref|YP_746980.1| flagellar M-ring protein FliF [Nitrosomonas eutropha C91] gi|114307772|gb|ABI59015.1| flagellar M-ring protein FliF [Nitrosomonas eutropha C91] Length = 547 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 133/563 (23%), Positives = 228/563 (40%), Gaps = 47/563 (8%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + L + L L I LF + +P Y LY L + I Sbjct: 12 KKAFSQLDKIKQLPAQKKLGLMVAAAAVIALFAGTWLWSQTPDYRVLYANLSEQEGGAII 71 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 AL + N+ ++ S++ SI VP + V + R+HLA QGLP + SG+E+ + FG + Sbjct: 72 DALQKMNVPYQFSESSGSILVPVNQVHEVRLHLAGQGLPKGNL-SGFEILE-NQKFGSSQ 129 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 F++++ RALEGE+AR+IQS+S + ARVH+ + F + +P+ SV++ + + Sbjct: 130 FLEQVNYQRALEGELARSIQSLSAVQGARVHLAIARPSVFTRERQQPSVSVLLNLHHGRM 189 Query: 185 Y--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA---NEMERNILGKSLSIVQAIQH 239 + AI HLV++++P+L + +VTV+D G LL+ N+ME + L VQ ++ Sbjct: 190 LSPEQVSAIVHLVSSSIPDLTVKNVTVVDQQGNLLSGQKENQMETGLDPGQLKYVQDMEQ 249 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS--IRLSKDAQRS 297 I L G DN + V A+++ + E Y P++ E S +R + ++ Sbjct: 250 NFVRRIEAILTPVTGQDNVHAQVTADIDFSRIERSEETYRPNNNPEESAAVRSQQKSESV 309 Query: 298 ETSQPESA-VTVEQNMPHVSDRKV--------PLPRSLENTDKKEEQSNYEINTKSIATT 348 SQP+ N P + ++ +KE +NYE++ Sbjct: 310 SISQPDGGVPGALSNRPPAPAQAPVETKEGQEETAQTTPTDTRKESTTNYEVDKTISHIR 369 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 ++ RLS AVVVN G ++ + +I +V A G + RGDT+T+ Sbjct: 370 QSTGQINRLSAAVVVNYRTRMNEEGNPINEPLSGEEIEKITALVKQAIGFSEARGDTLTV 429 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 T+ F + D + + L+ +V F R Sbjct: 430 TNSQFRLKEEILEELPLWKDPDTV----LLAKDIGKQLLIAAIVLFFLQKIFRPFLK--- 482 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 PP A+T D A+ + I +Q+ Sbjct: 483 -------NLLPPPPPAPVPALTAKDSEQDEAAI---------------NTIKVMTLEQNL 520 Query: 529 LRLLHMIEINEERFAKILRKWAR 551 + + A +++ W Sbjct: 521 EKARLLAANEPAIVANVVKGWVS 543 >gi|33592502|ref|NP_880146.1| flagellar MS-ring protein [Bordetella pertussis Tohama I] gi|33572148|emb|CAE41692.1| flagellar M-ring protein FliF [Bordetella pertussis Tohama I] gi|332381920|gb|AEE66767.1| flagellar MS-ring protein [Bordetella pertussis CS] Length = 558 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 130/552 (23%), Positives = 220/552 (39%), Gaps = 77/552 (13%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y L+ L+ D I AL + N+ +R SDNGS++ VP+ V R+ LA+Q Sbjct: 45 MWSREPDYKVLFSNLDDRDGGAIVSALDQMNVPYRFSDNGSALLVPAERVYDTRMQLASQ 104 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S G+EL D FG + F ++I R LEGE+AR+I+++ + ARVH+ MP Sbjct: 105 GLPRGGS-VGFELLDNT-RFGASQFAEQINYQRGLEGELARSIEAMHTVQHARVHLAMPR 162 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + PTASV++ A+ LVA++VP L +V+++D G+LL+ Sbjct: 163 QSLFVRDRQAPTASVLLNLYPGRSLSDAQVSAVAWLVASSVPELTAENVSIVDQNGRLLS 222 Query: 219 ANEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 A E R + L V+ ++ I L +G N + AE++ ++ V Sbjct: 223 APLGEGRGMDADQLRFVREMEQRTVERILTILNPLVGPGNVHAQASAEIDFARREETSEV 282 Query: 278 YDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPHVSDRKV-------------- 320 Y P+ + ++ S+ S + P +A V N P + + Sbjct: 283 YRPNQEPGQAAVRSQQTSDSRQTGPNAAQGVPGALSNQPPANAQAPIVNPPAVAGTPQQQ 342 Query: 321 -----------------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 + + D+ + NYE++ L+RLS+AVVV Sbjct: 343 QQQRAQQQAAGATTTQTQQGAAAPSNDRHDATINYEVDRTISHVKQPVGMLKRLSVAVVV 402 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 N L G S + L ++ +V A G + RGD++ + + F + + Sbjct: 403 NY--LPNKEGES--EALPPEELNKLTNLVREAMGYSEARGDSLNLVNSQFNDTPVAVPLW 458 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 A + AL +L G +L +L +R + Sbjct: 459 RDPEL-------IAMIKTALGWLFGLILAFWL-YRKIRPV-------------------- 490 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH-MIEINEERF 542 VT P + + ++ + +R + +L+L M + Sbjct: 491 -----VTDYFYPQVDPEVAAAQRQEAEREAQAAARTREVNRYEDNLQLARDMAGKDPRAV 545 Query: 543 AKILRKWARSEI 554 A +LR W + Sbjct: 546 AMVLRSWMSKDE 557 >gi|293605027|ref|ZP_06687421.1| flagellar M-ring protein FliF [Achromobacter piechaudii ATCC 43553] gi|292816576|gb|EFF75663.1| flagellar M-ring protein FliF [Achromobacter piechaudii ATCC 43553] Length = 558 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 125/551 (22%), Positives = 212/551 (38%), Gaps = 75/551 (13%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + + P Y L+ L+ D I AL N+ +R ++ G+++ VP+ V AR+ LA+Q Sbjct: 45 MWTSEPKYKVLFSNLDDRDGGAIVTALGTMNVPYRYNETGTALLVPADRVYDARLQLASQ 104 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S G+EL D FG + F ++I R LEGE+AR+I+++ + ARVH+ MP Sbjct: 105 GLPRGGS-VGFELMDNA-RFGASQFAEQINYQRGLEGELARSIEAMHTVQHARVHLAMPR 162 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + PTASV++ AI LVA++VP L +V+++D G+LL+ Sbjct: 163 QSLFVRERQAPTASVLLNVYPGRSMSDAQVSAISWLVASSVPELTAENVSIVDQNGRLLS 222 Query: 219 ANEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 A E R + + V+ ++ I L +G N + A+++ ++ + Sbjct: 223 APLGEGRGMDADQMRFVREMEQRTVERILTILNPLVGPGNVHAQASADVDFARREETSEI 282 Query: 278 YDPDSK----VERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN----- 328 Y P+ + RS + S QR + P + + P + + Sbjct: 283 YRPNQEPGQAAVRSQQTSDSTQRGVNPAQGVPGALSNQAPPNAQAPLANPPAAQPPRPGQ 342 Query: 329 -------------------------TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 ++++ +NYE++ L+RLS+AVVV Sbjct: 343 PPAAANAQQQQQQQQTGTQAATANLNERRDATTNYEVDRTISHIKQPVGNLKRLSVAVVV 402 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 N R + Q L ++ +V A G + RGD++ + + F + Sbjct: 403 NYIRDKDGE----PQALPPEELNKLTNLVREAMGYSETRGDSLNLVNSQFNDGPPPLPMW 458 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 A L +LVG +L +L +RR L PP Sbjct: 459 RDPEM-------IALFKTILAWLVGLVLAFWL-YRKIRRSVT------------EYLYPP 498 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 A D++ S + + R M + A Sbjct: 499 VDPEMAEAERQEAAREAQDAARTKELSRYED------------NLERARTMANKDPRAVA 546 Query: 544 KILRKWARSEI 554 +LR W + Sbjct: 547 MVLRTWMSKDE 557 >gi|311695217|gb|ADP98090.1| flagellar MS-ring protein [marine bacterium HP15] Length = 569 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 113/559 (20%), Positives = 228/559 (40%), Gaps = 37/559 (6%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 F L R + L + + L +A + P+Y + L + ++ L Sbjct: 27 DLFMGFNRLNLLRQIGLMVGLAASVALGLAVVLWAQEPNYQPVVGDLSSYNPQDVTTILE 86 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 ID+++ ++ VPS V AR+ LAA+G+ + GYEL D+ G + FM+ Sbjct: 87 SNGIDYKMDPRTGALLVPSDQVYNARLKLAAEGV-TDRQTMGYELLDQERGLGTSQFMET 145 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV--YK 186 I+ R LEGE+ART+ S+ G+ ARVH+ +P+ F + P+ASV + + Sbjct: 146 ISYRRGLEGELARTVASMRGVRNARVHLAIPERSVFVRDARDPSASVFLEVFAGRRPEQE 205 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHEIEMN 244 AI +LVA +VP + VTV+D G LLT + + ++ + Sbjct: 206 QINAIVNLVAGSVPMMSKEHVTVVDQNGNLLTGKQSQSGADQMADQYEYTAKVEERLTRR 265 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 + + +G +R+ V A+L+ + + E +++P+ + RS R + R Sbjct: 266 VASLIGPIVGDGRYRAEVSADLDFSSVEQAEELFNPEQQAVRSERELTE--RRTAGAQGG 323 Query: 305 AVTVEQNMPHVSDRKVPLPRSLEN--------TDKKEEQSNYEINTKSIATTHDNYKLER 356 N P + + + E NYE++ + +++R Sbjct: 324 IPGALANQPPANATVPEQAAGGDGEQAAPAPVNVRSESTRNYEMDRTVSYRRQELGRVKR 383 Query: 357 LSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 +++A+ V+ ++ + G + + + L ++ +V A G ++ RGD++T+ + F + Sbjct: 384 VTVALAVDDMKVVDPQTGEVSYEPWPEQELQRLSMLVRDAVGYSAARGDSVTVMNTAFAQ 443 Query: 416 NQLFN----SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 + + Q F D++ + A ++ ++ L L+ L ++ Sbjct: 444 EESVEFEAPAFWEQPWFWDLMKQVLAGLVILVLVLGLL-------RPTLKSLSGGGQRER 496 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 G G + G ++ + + + ++N+ L Sbjct: 497 GLDSGSGSGGGYGGLDDIEGGDELRKAMSAQD-DLLLPGATDGYDRQLNA---------L 546 Query: 532 LHMIEINEERFAKILRKWA 550 +I + R A+++R+W Sbjct: 547 KGLIAEDPARVAQVMRQWV 565 >gi|85858817|ref|YP_461019.1| flagellar M-ring protein [Syntrophus aciditrophicus SB] gi|85721908|gb|ABC76851.1| flagellar M-ring protein [Syntrophus aciditrophicus SB] Length = 509 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 142/557 (25%), Positives = 239/557 (42%), Gaps = 57/557 (10%) Query: 4 LDQLLQFFKSGTS----LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 ++ L+F+++ L R L V + + + A +F N P Y L+ L D Sbjct: 1 MNSFLRFYENLRQSFVELPPARKWSLLFVAGMTLSVLAAMVYFANRPEYKVLFSHLSSED 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + I L E I + I+ G +I VP+ V + R+ LA GLP G+E+FD+ Sbjct: 61 ASSILAKLQEKKISYEINSAGDTIFVPAEKVSELRLELAGSGLPQGGG-VGFEIFDQKT- 118 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 G T F Q++ RAL+GE+ RTI+ + I ++RVHI +P F +PTASV ++ Sbjct: 119 LGATEFEQQLNYRRALQGELGRTIKGLEEIESSRVHIALPRESLFVSEEKKPTASVTLKL 178 Query: 180 INPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIV 234 E I HLVA++V L+ GDV ++D+ G +L+ + E + G + Sbjct: 179 KPGRSLSSSQIEGIAHLVASSVEGLNAGDVIIVDNKGNILSKLKGESGLSGLSGSQIEFQ 238 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 + ++ + I L +G V A+L+ + E YDP+S V RS + + Sbjct: 239 RNLEKDTAARIQSLLENVVGQGKAVVRVAADLDFRMTEKTEESYDPESPVVRSTQKQSEK 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 P +D+ +K +E NYEIN T ++ Sbjct: 299 ---------------SATPGKADQSTGQ-------EKLDEIINYEINKTVSKTVMPVGEI 336 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 +LSIAV+V+ + + G+ Q + + I ++V + G ++ RGD +T+T+M F Sbjct: 337 RKLSIAVLVDGTYVKDKQGKEIYQPRSKKEIESIEELVRTSAGFSTARGDQVTVTNMPFK 396 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 + + F + +S +F +I L+ LV +LV F + L R +K Sbjct: 397 KLDTEDMTGGNGWFGENISTYF-PLIKYLLLLVVVVLVFFFVIRPLIRGITGQVTEK--- 452 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 + +P D I L Q + S + V + M Sbjct: 453 -------------VMEKEALPEDIIELTGETQSLDLLSVKERELTEIEV-------VKKM 492 Query: 535 IEINEERFAKILRKWAR 551 + + FA++LR W + Sbjct: 493 AVEDSKSFAELLRNWLK 509 >gi|126665015|ref|ZP_01735998.1| flagellar M-ring protein [Marinobacter sp. ELB17] gi|126630385|gb|EBA01000.1| flagellar M-ring protein [Marinobacter sp. ELB17] Length = 569 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 119/560 (21%), Positives = 239/560 (42%), Gaps = 44/560 (7%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 F L R + L + + L +A + P+Y + L + ++ L + Sbjct: 30 FMGFNRLDLLRQIGLMVGLAASVALGVAVVLWAQEPNYQPVLGDLSSYNPQDVTSILDSS 89 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 ID+++ ++ V + V AR+ LAA+G+ + G+EL D+ G + +M+ I+ Sbjct: 90 GIDYKMDPRTGALLVVADQVYNARLRLAAEGV-TDQKTLGFELLDQDRGLGTSQYMETIS 148 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--A 188 R LEGE+ARTI S+ G+ +ARVH+ +P+ F + P+ASV + + Sbjct: 149 YRRGLEGELARTIASMRGVRSARVHLAIPERSVFIRDAREPSASVFLEVFAGRRPEQEYI 208 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHEIEMNIN 246 AI +LVA +VP + VTV+D G LLT + E + ++ + ++ Sbjct: 209 AAIVNLVAGSVPMMTQSGVTVVDQNGNLLTGADAETDTDRMSDQYDYTDRVEERLSRRVS 268 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE-------- 298 ++ +G +R+ V A+L+ + + E +++P+ + RS R + + + Sbjct: 269 SLISPIVGEGRYRTEVSADLDFSSVERAEELFNPEQQAVRSERQLTERRSAGDGPIGIPG 328 Query: 299 --TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 ++QP + TV Q ++ P + E NYE++ + +++R Sbjct: 329 ALSNQPPANATVPQQANAGANADGAEPAPAPVDVRSESTRNYEMDRTVSYVRQELGRIKR 388 Query: 357 LSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 L++A+ V+ ++ G + + L ++ +V A G ++ RGD++T+ + F Sbjct: 389 LTVALAVDDIKVVNADTGAVTYEPWPEQELQRLSMLVRDAVGYSAARGDSVTVMNTAFAP 448 Query: 416 NQLFNSGTV----QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 Q+ Q F D++ + A ++ ++ L L+ L + + Sbjct: 449 EQVLEYDAPRFWQQPWFWDLMKQLLAGLVVLVLVLGLL-------RPTLKNLASGNRGLA 501 Query: 472 GEVG-GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 G G L ++ + D++ L S ++N+ Sbjct: 502 GSGNEGYGDLDGIEGGDSLRRAMANQDDLLLPGSTG-------GYDRQLNA--------- 545 Query: 531 LLHMIEINEERFAKILRKWA 550 L +I + R A+++R+W Sbjct: 546 LKGLIAEDPARVAQVMRQWV 565 >gi|33601565|ref|NP_889125.1| flagellar MS-ring protein [Bordetella bronchiseptica RB50] gi|33576001|emb|CAE33081.1| flagellar M-ring protein [Bordetella bronchiseptica RB50] Length = 558 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 129/552 (23%), Positives = 220/552 (39%), Gaps = 77/552 (13%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y L+ L+ D I AL + N+ +R SDNGS++ VP+ V R+ LA+Q Sbjct: 45 MWSREPDYKVLFSNLDDRDGGAIVSALGQMNVPYRFSDNGSALLVPAERVYDTRMQLASQ 104 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S G+EL D FG + F ++I R LEGE+AR+I+++ + ARVH+ MP Sbjct: 105 GLPRGGS-VGFELLDNT-RFGASQFAEQINYQRGLEGELARSIEAMHTVQHARVHLAMPR 162 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + PTASV++ A+ LVA++VP L +V+++D G+LL+ Sbjct: 163 QSLFVRDRQAPTASVLLNLYPGRSLSDAQVSAVAWLVASSVPELTAENVSIVDQNGRLLS 222 Query: 219 ANEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 A E R + L V+ ++ I L +G N + AE++ ++ V Sbjct: 223 APLGEGRGMDADQLRFVREMEQRTVERILTILNPLVGPGNVHAQASAEIDFARREETSEV 282 Query: 278 YDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPHVSDRKV-------------- 320 Y P+ + ++ S+ S + P +A V N P + + Sbjct: 283 YRPNQEPGQAAVRSQQTSDSRQTGPNAAQGVPGALSNQPPANAQAPIVNPPAVAGTPQQQ 342 Query: 321 -----------------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 + + D+ + NYE++ L+RLS+AVVV Sbjct: 343 QQQRAQQQAAGATTTQTQPGAAAPSNDRHDATINYEVDRTISHVKQPVGMLKRLSVAVVV 402 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 N L G S + L ++ +V A G + RGD++ + + F + + Sbjct: 403 NY--LPNKEGES--EALPPEELNKLTNLVREAMGYSEARGDSLNLVNSQFNDTPVAVPLW 458 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 A + AL ++ G +L +L +R + Sbjct: 459 RDPEL-------IAMIKTALGWMFGLILAFWL-YRKIRPV-------------------- 490 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH-MIEINEERF 542 VT P + + ++ + +R + +L+L M + Sbjct: 491 -----VTDYFYPQVDPEVAAAQRQEAEREAQAAARTREVNRYEDNLQLARDMAGKDPRAV 545 Query: 543 AKILRKWARSEI 554 A +LR W + Sbjct: 546 AMVLRSWMSKDE 557 >gi|260222430|emb|CBA31986.1| hypothetical protein Csp_D29860 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 579 Score = 385 bits (988), Expect = e-104, Method: Composition-based stats. Identities = 132/562 (23%), Positives = 233/562 (41%), Gaps = 37/562 (6%) Query: 12 KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71 + T+L + + + LA I + + + + + LY L D + L+ N Sbjct: 32 QRLTALDQGQRIRLALGIALFVAIAVVGLVMGRQAEWRVLYSNLADKDGGAVIAQLTTMN 91 Query: 72 IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131 + ++ ++ G +I VP+ V R+ LA+QGLP S SG+E+ + N FG+T F + +T Sbjct: 92 VPYKYTEGGGAILVPADRVHDVRLKLASQGLPKGSV-SGFEMMEA-NRFGMTQFQERLTF 149 Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAE 189 R LEGE+ R+IQ++S + +ARVH+ +P+ F + +P+ASV++ Sbjct: 150 QRGLEGELTRSIQALSSVSSARVHLALPNQNGFFREQQKPSASVLLSLHPGRALDKGQLA 209 Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQAIQHEIEMNINKA 248 I HLVA++VP ++ V+VLD TGKLL+AN + + + L VQ I+ I Sbjct: 210 GIVHLVASSVPEMNPSAVSVLDDTGKLLSANPDAAAGVDAEQLQYVQQIEQLYSRRILDM 269 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVY----DPDSKVERSIRLSKDAQRSETSQPES 304 L +G N ++ V AEL+ + + PDS RS +L + ++ + P Sbjct: 270 LEPLVGKQNVKAQVTAELDFSQTESTTESHKPNQTPDSGAVRSQQLVESTNGTQPTPPAG 329 Query: 305 AVTVEQNMPHVSD-------------RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 N P S ++ KKE NYE++ T Sbjct: 330 VPGATTNQPPAQPAAPINGQPQTLAANGQTAAGSTNSSSKKESIINYEVDKTIRVTKGAV 389 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 ++R++ AVV+N +T+ G + ++ L ++ +V G N RGD++ + + Sbjct: 390 GAIKRINAAVVLNNQSVTDAKGVTTSVALTEAQLEKMTALVRETVGFNQDRGDSVNVVNA 449 Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 F + + T + +L + +GTL + L L + R + Sbjct: 450 PFAPEKAEVNDTPV-----WRQPEVQELARSLAWPLGTLGLAALVLLGVIRPAMKALTQP 504 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 V + A+ + SS + S ++ Sbjct: 505 APVAEPLENNDVAQLDAIENDQPERPQLTGPSSANEAQQASPGELRLEDA---------- 554 Query: 532 LHMIEINEERFAKILRKWARSE 553 + N A I++ W E Sbjct: 555 RKLTRDNPAAVANIVKAWMNGE 576 >gi|91776330|ref|YP_546086.1| flagellar M-ring protein FliF [Methylobacillus flagellatus KT] gi|91710317|gb|ABE50245.1| flagellar M-ring protein FliF [Methylobacillus flagellatus KT] Length = 586 Score = 385 bits (988), Expect = e-104, Method: Composition-based stats. Identities = 125/554 (22%), Positives = 218/554 (39%), Gaps = 48/554 (8%) Query: 36 FMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARI 95 + + P Y L+ D I AL + N+ +RI+D GS+I VP++ V R+ Sbjct: 46 MVVFWLWSQKPEYRVLFSSYSDKDGGAIVAALEQMNVPYRIADGGSAILVPANHVHDVRL 105 Query: 96 HLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVH 155 LA+QGLP N G+EL + FG++ F++++ R LEGE+ RTIQSI + AAR+H Sbjct: 106 RLASQGLPKGG-NIGFELLE-NQKFGVSQFVEQVNFQRGLEGELERTIQSIGAVQAARIH 163 Query: 156 IVMPDMGSFRKIGARPTASVMIRAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDST 213 + MP F + +PTASVM+ + AI HLVA++VP L +VTV+D Sbjct: 164 LAMPKPTVFTRDQQKPTASVMLNLHPGRALDQRQVSAIVHLVASSVPELPTSNVTVVDQN 223 Query: 214 GKLLTANEMERN----ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 G LL+ N + + L V +Q I + +A +G N + AE++ Sbjct: 224 GNLLSDNGKDAGNHYQLDPTQLKYVDELQQNIARRVESIIAPLVGAKNVHAEASAEVDFS 283 Query: 270 TQQIREIVYDPDSKVERSIRLSKDAQRSET--------------SQPESAVTVEQNMPHV 315 + +Y P+ + + S S+T +QP + T P Sbjct: 284 MVEQAAEIYKPNQAPDSAAIRSSQTNESQTLPGQGVGGVPGALTNQPPAPATAPIVAPGT 343 Query: 316 SDRKVPLPRSLEN---------------TDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 + ++ +NYE++ ++RL++A Sbjct: 344 EPTTTTNANVVTTTTTTPPGTTVTTPVMNSERNTTTNYEVDKTIRYQQQPMGGIKRLTVA 403 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 VVVN + + G+ + D +I+ + A G N RGD++++ + F+ Sbjct: 404 VVVNHKQEVDAQGKVITRPLTDDEKTQISDLAKQAMGFNEERGDSLSVVNGSFMPEIAEA 463 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 V + + L + L++ L LR L ++ + G + L Sbjct: 464 FPEVPLWKDP---DNIEMAKEWLKNGLVLLVLYMLYRRFLRPLLRKLSPEEEKKGELAEL 520 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 + V+ ++ +++ + + N + Sbjct: 521 DEEDQDAIVS--------LSEGEGGMTGEEAGEEEGGAPAERTYQKNLESARKLAKENPK 572 Query: 541 RFAKILRKWARSEI 554 A I+ W S Sbjct: 573 VVASIVTNWVNSNE 586 >gi|30250023|ref|NP_842093.1| fliF; flagellar M-ring transmembrane protein [Nitrosomonas europaea ATCC 19718] gi|30139130|emb|CAD85994.1| fliF; flagellar M-ring transmembrane protein [Nitrosomonas europaea ATCC 19718] Length = 548 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 121/565 (21%), Positives = 220/565 (38%), Gaps = 50/565 (8%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + L + L L I L + SP Y LY L + I Sbjct: 12 KKTFSQLDKIKQLPTQKKLGLMVAAAAVIALIAGTWLWSQSPDYRVLYASLSDQEGGAII 71 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 AL + N+ ++ S++G SI +P+S V + R+ LA QGLP + SG+E+ + FG + Sbjct: 72 EALQKMNVPYQFSESGGSILIPASQVHEVRLRLAGQGLPKGNL-SGFEILE-NQKFGSSQ 129 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 F++++ RALEGE++R+IQS+S + ARVH+ + F + +P SV++ + Sbjct: 130 FLEQVNYQRALEGELSRSIQSLSAVQGARVHLAIAKPSVFTRERPQPRVSVLLNLHPGRM 189 Query: 185 Y--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA---NEMERNILGKSLSIVQAIQH 239 + AI HL+++++P++ + +VTV+D G LL+ N+ E + L VQ ++ Sbjct: 190 LSTEQVSAIVHLISSSIPDMPVKNVTVVDQQGNLLSGQKDNQAETGLDPGQLKYVQDMEQ 249 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS-----KVERSIRLSKDA 294 I L G DN + V A+++ + E +Y P++ RS + S+ Sbjct: 250 NFVRRIEAILTPITGEDNVHAQVTADVDFSRIERAEEIYKPNNNPAEAAAVRSQQQSESV 309 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV--------PLPRSLENTDKKEEQSNYEINTKSIA 346 S+ N P ++ ++E +NYE++ Sbjct: 310 SISQP--EGGVPGALSNRPPAPAEAPIEAKQSSEAAAKTTPTDTRRESTTNYEVDKTISH 367 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 T ++ RLS AVV+N + G A++ + +I +V G + RGDT+ Sbjct: 368 TRQATGRINRLSAAVVINYRTKLDTEGNPANEPLSGEEIEKITALVKQTIGFDETRGDTL 427 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 T+T+ F D + L+ + + + LR L Sbjct: 428 TVTNSQFNLKGDSLEELPPWKDPDTVLLAKDIGKQLLIAAIVLFFLQKIFRPFLRNLLPP 487 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 + ++ HS S + ++ Sbjct: 488 PPPPPVPA----------------------------LAVKNGLEHSEAEVSTVRVVTLEE 519 Query: 527 SDLRLLHMIEINEERFAKILRKWAR 551 + + + A +++ W Sbjct: 520 NLEKARLLAVTEPAIVANVVKGWVS 544 >gi|329888114|ref|ZP_08266712.1| flagellar M-ring protein FliF [Brevundimonas diminuta ATCC 11568] gi|328846670|gb|EGF96232.1| flagellar M-ring protein FliF [Brevundimonas diminuta ATCC 11568] Length = 545 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 142/548 (25%), Positives = 234/548 (42%), Gaps = 12/548 (2%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 F ++ G R+ + V + +A V LY L++ + + IS AL + Sbjct: 4 FTEALKRFGIGRLAAILGVAAGVAAVLVAVMLRVGQAPDALLYSNLDLREASEISAALDQ 63 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 A I + +GS+I V VG AR+ LA +GL +S S GYE+FD + G T F Q + Sbjct: 64 AGIKYSSKGDGSTIFVSRDEVGTARLMLAGKGLVTSGS-VGYEIFDNQSVLGQTEFQQNL 122 Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS-VYKSA 188 RAL+GE+ARTI S+ GI +ARVHI MP F+ PTA+V++ Sbjct: 123 NEQRALQGELARTIMSMRGISSARVHITMPRREMFQAAAIDPTAAVVVGLSGRDLSADQV 182 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQA-IQHEIEMNINK 247 AIR++VA++VPNL VTV D + L A + + +A + +++ I Sbjct: 183 RAIRNVVASSVPNLKPDKVTVTDQANRTLAAGSEDTGFTSATAEASKASTEAQMQARIKD 242 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVT 307 + +G R V A+++ +E +DPD +V RS + + T Q + VT Sbjct: 243 IVEGVVGAGAARVQVTADIDHSRSTTQEQKFDPDGQVVRSTSTNGSQSQDTTGQQDGGVT 302 Query: 308 VEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367 N+P S + E +NYEI+ + T + ++++LS++V V+ Sbjct: 303 ATNNIPGGQAPNTTPIGST--NSENTETTNYEISNTTTTTVKEPGEVKKLSVSVAVDGKY 360 Query: 368 LTEVLGR--SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425 G+ + + +I +V+AA GI+ RGD + + ++ F G + Sbjct: 361 TPAADGKGEPTYAARTAEEVQQIKALVAAAVGIDETRGDKLEVVNVRFSREPSAAPGAEE 420 Query: 426 VSFMDILSRH-FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPP 484 S M ++ + L+ V ++ F L L + G I Sbjct: 421 GSSMFAFDKNDIMRGVELLILAVTGFVLVFFVLRPLLKAATGSGGAPALAGAGGIPVTAL 480 Query: 485 ISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAK 544 + V G +P L + R +RI V S ++ ++ + E Sbjct: 481 DTQIV-GGTLPGGAPMLAGPSD---MEQRIDIARIEGQVKASSIKKVADFVDSHPEESTA 536 Query: 545 ILRKWARS 552 ILR W Sbjct: 537 ILRSWMHE 544 >gi|254563420|ref|YP_003070515.1| basal-body MS biosynthesis protein [Methylobacterium extorquens DM4] gi|254270698|emb|CAX26702.1| flagellar biosynthesis; basal-body MS(membrane and supramembrane)-ring and collar protein [Methylobacterium extorquens DM4] Length = 540 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 144/541 (26%), Positives = 254/541 (46%), Gaps = 13/541 (2%) Query: 15 TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF 74 T LG RI +A+V L + F V+ P L+ L + D + + L I + Sbjct: 9 TKLGPARIAAMAAVTLTLVGFFAFVILRVSRPDMGVLFSDLSLQDSSSVIRELDARGITY 68 Query: 75 RISDN-GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 G ++ P + + K R+ A +GLPS GYE+FDK ++F TSF+Q + +R Sbjct: 69 ETKGEMGQTVLAPRADLAKLRMDFAGKGLPSQGG-IGYEIFDKGDAFSSTSFVQNVNHLR 127 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRH 193 A+EGE+AR+I++I + AARVH+V+P+ F + P+A+++++ + AIRH Sbjct: 128 AMEGELARSIRAIGRVQAARVHLVIPERRLFERDREAPSAAIVVKLMGDLDASQVRAIRH 187 Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEMNINKALAA 251 L A+AV L V+++D G+LL E + G I+ + I + +A Sbjct: 188 LAASAVEGLKPERVSIVDERGRLLADGARGAEADGAGALEERQAGIERRMRSQIEEIVAG 247 Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311 +G R V AEL+++ + R +DP+S+V RS + + S T E VTV Sbjct: 248 IVGQGRARVQVTAELDLNRVESRSESFDPESRVVRSTQTRSEN--SLTGGAEGQVTVGNE 305 Query: 312 MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV 371 +P + + P P+ +++ K EE +NYEI+ + T + +L+RLS+AV+V+ Sbjct: 306 LPGANQNQ-PAPQQKDSSQKNEETTNYEISRVTKVETLEGGRLKRLSVAVLVDGVYAPGA 364 Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDI 431 G+ A Q + D+ +A I +V A G + RGD + + ++ F E + Sbjct: 365 DGKPAYQPRSDAEIARITALVRTAVGYDKVRGDQVEVVNLRFAETPTTAEFSEPGLIQSF 424 Query: 432 LSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTT 491 LS V+ + V +LL + + +R L + ++ A Sbjct: 425 LSPTKEEVMRLVELTVLSLLTLVVLMAVVRPLLRRVLESDAPMALAGPAGALALAGAGGG 484 Query: 492 GLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWAR 551 + +S+N+ + S ++IN + ++ R++ M+ + ++LR W Sbjct: 485 EAPVEIAVRENSTNKFLES------AKINGQIQAETVERVVDMVRASPTETVEVLRNWIH 538 Query: 552 S 552 Sbjct: 539 D 539 >gi|292669732|ref|ZP_06603158.1| flagellar M-ring protein FliF [Selenomonas noxia ATCC 43541] gi|292648529|gb|EFF66501.1| flagellar M-ring protein FliF [Selenomonas noxia ATCC 43541] Length = 526 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 132/562 (23%), Positives = 247/562 (43%), Gaps = 53/562 (9%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ L +K R R ++L S + + +++F + ++ + P L+ +E D ++ Sbjct: 6 ERGLAMWKRFDK--RQRYIMLGSALAILVLIFGLSFWYGSKPDMVPLFTDMETKDAGEVA 63 Query: 65 VALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 L E+ I + I +N G++I VP++ V +AR++LA QGLP + G+E+FD + G+ Sbjct: 64 KQLRESKISYEIQENKSGTTILVPTTNVHEARLNLATQGLPRGNK--GFEIFD-DSKLGV 120 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN- 181 T F + ++AL+GE+ RTI+ I + ARVHIV+P+ ++K TAS+M+R Sbjct: 121 TEFQNRVNYLQALQGELTRTIEQIEAVEKARVHIVLPEDSLYKKEEKPATASIMLRLKPN 180 Query: 182 -PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-----GKSLSIVQ 235 K + I +L A +V L ++T++D TGK+L + + L + + Sbjct: 181 AELTKKEIKGIVNLAAHSVKGLMPENITIVDDTGKILNDPDDQDENAIGVKTLTQLDMTR 240 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSK 292 +Q IE + L LG + V EL+ D + + P D+ + RS + Sbjct: 241 KVQDNIEKKVQSLLDQTLGEGRAFARVSVELDFDDRLTDRQTFTPVVDDAGIIRSQQDIS 300 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 ++ ++ P V+ N+P +++ +KKE NYEIN + Sbjct: 301 ESYVGNSTNPGGPAGVQSNVPGYVEQEANANA---EYEKKESTKNYEINEERQHVIASPG 357 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 + RL++AV+VN I + VS+A GIN RGDTI++ + Sbjct: 358 SIRRLTVAVLVNDDV-------------TQPQQESILRTVSSAAGINPTRGDTISVEPLP 404 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F + + D R F + + ++ ++ L +RL + A++ Sbjct: 405 FSTEAAERRAAEEQAEKDRQDRIFYAQVGLALLIIALIVGGILMYRRKKRLER-EAAEEA 463 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 + ++ + ++ + S Q ++N ++ LL Sbjct: 464 QRIEEARAAEERAAAIAAG-------------EVEEEDLSEEEQHQMNQKLA------LL 504 Query: 533 HMIEINEERFAKILRKWARSEI 554 +I+ E A +++ W E Sbjct: 505 ALIDSKPEEVALLVKTWLSEEE 526 >gi|218532348|ref|YP_002423164.1| flagellar MS-ring protein [Methylobacterium chloromethanicum CM4] gi|218524651|gb|ACK85236.1| flagellar M-ring protein FliF [Methylobacterium chloromethanicum CM4] Length = 540 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 144/541 (26%), Positives = 254/541 (46%), Gaps = 13/541 (2%) Query: 15 TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF 74 T LG RI +A+V L + F V+ P L+ L + D + + L I + Sbjct: 9 TKLGPARIAAMAAVTLTLVGFFAFVILRVSRPDMGVLFSDLSLQDSSSVIRELDARGITY 68 Query: 75 RISDN-GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 G ++ P + + K R+ A +GLPS GYE+FDK ++F TSF+Q + +R Sbjct: 69 ETKGEMGQTVLAPRADLAKLRMDFAGKGLPSQGG-IGYEIFDKGDAFSSTSFVQNVNHLR 127 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRH 193 A+EGE+AR+I++I + AARVH+V+P+ F + P+A+++++ + AIRH Sbjct: 128 AMEGELARSIRAIGRVQAARVHLVIPERRLFERDREAPSAAIVVKLMGDLDASQVRAIRH 187 Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEMNINKALAA 251 L A+AV L V+++D G+LL E + G I+ + I + +A Sbjct: 188 LAASAVEGLKPERVSIVDERGRLLADGARGAEADGAGALEERQAGIERRMRSQIEEIVAG 247 Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311 +G R V AEL+++ + R +DP+S+V RS + + S T E VTV Sbjct: 248 IVGQGRARVQVTAELDLNRVESRSESFDPESRVVRSTQTRSEN--SLTGGAEGQVTVGNE 305 Query: 312 MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV 371 +P + + P P+ +++ K EE +NYEI+ + T + +L+RLS+AV+V+ Sbjct: 306 LPGANQNQ-PAPQQKDSSQKNEETTNYEISRVTKVETLEGGRLKRLSVAVLVDGVYAPGA 364 Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDI 431 G+ A Q + D+ +A I +V A G + RGD + + ++ F E + Sbjct: 365 DGKPAYQPRSDAEIARITALVRTAVGYDKVRGDQVEVVNLRFAETPTAAEFSEPGLIQSF 424 Query: 432 LSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTT 491 LS V+ + V +LL + + +R L + ++ A Sbjct: 425 LSPTKEEVMRLVELTVLSLLTLVVLMAVVRPLLRRVLESDAPMALAGPAGALALAGAAGG 484 Query: 492 GLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWAR 551 + +S+N+ + S ++IN + ++ R++ M+ + ++LR W Sbjct: 485 EAPVEIAVRENSTNKFLES------AKINGQIQAETVERVVDMVRASPTETVEVLRNWIH 538 Query: 552 S 552 Sbjct: 539 D 539 >gi|304438472|ref|ZP_07398412.1| flagellar M-ring protein FliF [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368555|gb|EFM22240.1| flagellar M-ring protein FliF [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 526 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 132/562 (23%), Positives = 243/562 (43%), Gaps = 53/562 (9%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ L +K R R ++L S + + +++F + ++ + P L+ +E D ++ Sbjct: 6 ERSLALWKRFDK--RQRYIMLGSALAILVLVFGLSFWYGSKPDMVPLFTDMETKDAGEVA 63 Query: 65 VALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 L E+ I + I +N G++I VP++ V +AR++LA QGLP + G+E+FD + G+ Sbjct: 64 NQLRESKISYEIQENKSGTTILVPTANVHEARLNLAVQGLPHGNK--GFEIFD-DSKLGV 120 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN- 181 T F + ++AL+GE+ RTI+ I + ARVHIV+P+ ++K TAS+M+R Sbjct: 121 TEFQNRVNYLQALQGELTRTIEQIEAVDKARVHIVLPEDSLYKKEEKPATASIMLRLKPH 180 Query: 182 -PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGK---SLSIVQ 235 K + I +L A ++ L ++T++D TGK+L + E+ + K L + + Sbjct: 181 AELTKKEIKGIVNLAAHSIKGLTPENITIVDDTGKILNDPDDQDEKGLGAKTITQLEMTR 240 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSK 292 +Q IE + L LG + V EL+ D + + P D+ + RS + Sbjct: 241 KVQDNIEKKVQTLLDQTLGEGRAFARVSVELDFDDRLTDRQTFTPVVDDAGIIRSQQDIS 300 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 ++ ++ P V+ N+P +++ + +KKE NYEIN + Sbjct: 301 ESYNGSSTNPGGPAGVQSNVPGYVEQESNANAA---YEKKESTKNYEINEERQHVIASPG 357 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 + R+++AV+VN I + VS+A GIN RGDTI++ + Sbjct: 358 SIRRMTVAVLVNDDV-------------TQPQQESILRTVSSAAGINQTRGDTISVEPLP 404 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F + D R F + A++ ++ ++ L +RL Sbjct: 405 FSTEAADRRAAELQAEKDRQDRIFYMQVGAVLLIIALIVAAILMYRRKKRLER------- 457 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 +A + + +A + + L LL Sbjct: 458 -------------EAAEEAKRLEEERLAEERAAAIAAGEVEEEDLSEEEQQQMNEKLALL 504 Query: 533 HMIEINEERFAKILRKWARSEI 554 +I+ E A +++ W E Sbjct: 505 ALIDSKPEEVALLVKTWLTEEE 526 >gi|120613031|ref|YP_972709.1| flagellar M-ring protein FliF [Acidovorax citrulli AAC00-1] gi|120591495|gb|ABM34935.1| flagellar M-ring protein FliF [Acidovorax citrulli AAC00-1] Length = 566 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 132/568 (23%), Positives = 239/568 (42%), Gaps = 48/568 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + ++L R++ L + I + + +AA P Y L+ L D I LS Sbjct: 21 LQRFSALDRSKRLRFGAGIALLVAAVVAAVVLNRQPDYKVLFSNLSDKDGGAIVAQLSTM 80 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 N+ ++ S+ G +I VP+ V R+ LA QGLP S +G+EL + N FG+T F + + Sbjct: 81 NVPYKYSEGGGAILVPAERVHDVRLRLATQGLPKGSV-TGFELME-TNRFGVTQFQERLN 138 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS--VYKSA 188 R LEGE+ R+IQ++S + +ARVH+ +P+ F + +P+ASV++ Sbjct: 139 FQRGLEGELTRSIQALSSVQSARVHLALPNQNGFFREQQKPSASVLLSLYPGRFLDRTQL 198 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKSLSIVQAIQHEIEMNI 245 I HLVA++VP + V+VLD TGKLL+ + I + LS VQ I+ + I Sbjct: 199 AGIVHLVASSVPEMSPSAVSVLDDTGKLLSQSPDTAAGSAIDAQQLSYVQQIEQQYTRRI 258 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVY----DPDSKVERSIRLSKDAQRSETSQ 301 L +G +N ++ V AE++ + + PDS RS ++ + + ++ +Q Sbjct: 259 LDILEPVVGKNNVKAQVTAEVDFSQSEQTSEQHRPNQTPDSSAVRSQQVVESSGGTQGNQ 318 Query: 302 PE-SAVTVEQNMPHV-----------SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 P N P + + K+E +NYE++ T Sbjct: 319 PPAGVPGAASNQPPQPSTAPINGANPAPTAGNGQQGQAAGSKRESITNYEVDKTVRVTRA 378 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSAD-QGKIDSYLAEINKIVSAATGINSRRGDTITI 408 + ++R+S AVVVN + + G++ + + ++ +V G + RGD++ I Sbjct: 379 GSGAIKRVSAAVVVNYQAIADAAGKAPQAKAFTPEQIEQMTALVRETIGYSKDRGDSVNI 438 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 + FL + +++ + + L L++ L A++ ++ Sbjct: 439 MNTQFLVDNTPAVELPLWKQPEMIELAKSLGWPVGMSLFAALILLGLVRPAIKGMNQPPA 498 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 G+ + A+ +A + +D+ Sbjct: 499 PAAAPASGRQV-------DAIEADEPERPALAAPAKPEDLIQTPE--------------Q 537 Query: 529 LRLLH---MIEINEERFAKILRKWARSE 553 +RL + + N A IL+ W E Sbjct: 538 MRLEEARVLAKENPVAVANILKVWVNGE 565 >gi|240140910|ref|YP_002965390.1| flagellar biosynthesis; basal-body MS(membrane and supramembrane)-ring and collar protein [Methylobacterium extorquens AM1] gi|240010887|gb|ACS42113.1| flagellar biosynthesis; basal-body MS(membrane and supramembrane)-ring and collar protein [Methylobacterium extorquens AM1] Length = 540 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 144/541 (26%), Positives = 254/541 (46%), Gaps = 13/541 (2%) Query: 15 TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF 74 T LG RI +A+V L + F V+ P L+ L + D + + L I + Sbjct: 9 TKLGPARIAAMAAVTLTLVGFFAFVILRVSRPDMGVLFSDLSLQDSSSVIRELDARGITY 68 Query: 75 RISDN-GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 G ++ P + + K R+ A +GLPS GYE+FDK ++F TSF+Q + +R Sbjct: 69 ETKGEMGQTVLAPRADLAKLRMDFAGKGLPSQGG-IGYEIFDKGDAFSSTSFVQNVNHLR 127 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRH 193 A+EGE+AR+I++I + AARVH+V+P+ F + P+A+++++ + AIRH Sbjct: 128 AMEGELARSIRAIGRVQAARVHLVIPERRLFERDREAPSAAIVVKLMGDLDASQVRAIRH 187 Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEMNINKALAA 251 L A+AV L V+++D G+LL E + G I+ + I + +A Sbjct: 188 LAASAVEGLKPERVSIVDERGRLLADGARGAEADGAGALEERQAGIERRMRSQIEEIVAG 247 Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311 +G R V AEL+++ + R +DP+S+V RS + + S T E VTV Sbjct: 248 IVGQGRARVQVTAELDLNRVESRSESFDPESRVVRSTQTRSEN--SLTGGAEGQVTVGNE 305 Query: 312 MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV 371 +P + + P P+ +++ K EE +NYEI+ + T + +L+RLS+AV+V+ Sbjct: 306 LPGANQNQ-PAPQQKDSSQKNEETTNYEISRVTKVETLEGGRLKRLSVAVLVDGVYAPGA 364 Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDI 431 G+ A Q + D+ +A I +V A G + RGD + + ++ F E + Sbjct: 365 NGKPAYQPRSDAEIARITALVRTAVGYDKVRGDQVEVVNLRFAETPTAAEFSEPGLIQSF 424 Query: 432 LSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTT 491 LS V+ + V +LL + + +R L + ++ A Sbjct: 425 LSPTKEEVMRLVELTVLSLLTLVVLMAVVRPLLRRVLESDAPMALAGPAGALALAGAAGG 484 Query: 492 GLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWAR 551 + +S+N+ + S ++IN + ++ R++ M+ + ++LR W Sbjct: 485 EAPVEIAVRENSTNKFLES------AKINGQIQAETVERVVDMVRASPTETVEVLRNWIH 538 Query: 552 S 552 Sbjct: 539 D 539 >gi|260886631|ref|ZP_05897894.1| flagellar M-ring protein FliF [Selenomonas sputigena ATCC 35185] gi|330839537|ref|YP_004414117.1| flagellar M-ring protein FliF [Selenomonas sputigena ATCC 35185] gi|260863774|gb|EEX78274.1| flagellar M-ring protein FliF [Selenomonas sputigena ATCC 35185] gi|329747301|gb|AEC00658.1| flagellar M-ring protein FliF [Selenomonas sputigena ATCC 35185] Length = 529 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 122/561 (21%), Positives = 241/561 (42%), Gaps = 50/561 (8%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ L+ + + + R R +I+ + LV I + + + P L+ +E D ++ Sbjct: 6 ERYLELWNNYSK--RQRYMIIGAAALVFIAIVAGSIIYGGKPDMVPLFTNMEAKDAGEVA 63 Query: 65 VALSEANIDFRISDNG--SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 L E +++ I + G ++I VP+ V R+ LAA+GLP + G+ELFD + G+ Sbjct: 64 AKLKENKVNYEIQEGGQGTTILVPAKSVDSTRLDLAAEGLPRGNK--GFELFD-DSKLGV 120 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T F ++ ++AL+GE+ RTI+ I + ARVHIV+P+ ++K TAS+M++ Sbjct: 121 TEFQNKVNYLQALQGELTRTIEQIDAVEKARVHIVLPEDSLYKKNEKPATASIMLKLKAN 180 Query: 183 SVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI-----LGKSLSIVQ 235 K + I +L A +V L ++T++D +GK+L + + + + + Sbjct: 181 MQLSKKEVKGIVNLAAHSVQGLTPENITIVDESGKILNDPDENGDDGVGQKTLTQMEMTK 240 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSK 292 +Q ++ N+ L A LG + EL+ D + +Y P +S + RS + + Sbjct: 241 KVQDNLQKNVQSLLDASLGEGKSFVRISVELDFDQKMTDSQIYTPVVDESGIVRSQQTTS 300 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 ++ ++QP + N+P ++ S ++KE +NYE+N + Sbjct: 301 ESYAGTSTQPGGPAGTQSNVPGYVEQN---NNSQAQYERKENTTNYEVNEEKRKVVASPG 357 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 + RL++AV+VN + I + V +A GIN RGDT+++ + Sbjct: 358 SIRRLTVAVLVNDDV-------------TQAQQESILRSVRSAAGINPDRGDTVSVEPLP 404 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F + + D L R F + A + ++ ++ + L +RL Sbjct: 405 FSTEARDKKLADEQAERDRLDREFYLQLAAFLLVIALIVGSILMYRRKKRLEQ------- 457 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 + + + + A + + + R + + + Sbjct: 458 -----EAIEEQRRQEELERQRLAEERAAQIEAGEVTEEELTEEEQRQLTEMQA-----IE 507 Query: 533 HMIEINEERFAKILRKWARSE 553 MI E A ++++W + Sbjct: 508 EMIMHTPEDAAMLVKQWLAGD 528 >gi|241763655|ref|ZP_04761705.1| flagellar M-ring protein FliF [Acidovorax delafieldii 2AN] gi|241367130|gb|EER61496.1| flagellar M-ring protein FliF [Acidovorax delafieldii 2AN] Length = 561 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 132/569 (23%), Positives = 235/569 (41%), Gaps = 51/569 (8%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 + + ++L R++ + L + + + + +AA P Y L+ L D I LS+ Sbjct: 17 WLQRLSTLDRSQRMRLGVGVALLVAVAIAAIVLGRQPDYRVLFANLSDKDGGAIVAQLSQ 76 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 N+ ++ +D G +I +PS V R+ LA QGLP S +G+EL + N FG+T F + + Sbjct: 77 MNVPYKYADGGGAILIPSDRVHDVRLRLATQGLPKGSV-AGFELMES-NRFGITQFQERL 134 Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE 189 R LEGE+ R+IQ++S + ARVH+ +P+ F + +P+ASV++ + A+ Sbjct: 135 NFQRGLEGELTRSIQALSSVQGARVHLALPNQNGFFREQQKPSASVLVSLHPGRILDRAQ 194 Query: 190 --AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKSLSIVQAIQHEIEMN 244 I HLVA++VP L V+VLD TGKLL+ + + + L VQ I+ + Sbjct: 195 LAGIVHLVASSVPELAPSAVSVLDDTGKLLSQSPDTAAGTGVDAQQLLYVQQIEQQYTRR 254 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVY----DPDSKVERSIRLSKDAQRSETS 300 I L +G +N ++ V AE++ + + PD+ RS ++ + Sbjct: 255 IMDILEPVVGRNNVKAQVSAEVDFSQTESTSEQHRPNQSPDASAVRSQQVVESNGPQGNP 314 Query: 301 QPESAVTVEQNMPHVS-----DRKVPLPRSLENT--------DKKEEQSNYEINTKSIAT 347 P N P + + P P + K+E NYE++ T Sbjct: 315 LPTGVPGAASNQPPAASTAPINGANPAPTAAGGQQQGALGAGSKRESVINYEVDKTVRVT 374 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 + ++RL+ AVVVN + G++ + L ++ +V G N RGD++ Sbjct: 375 RGGSGAVKRLTAAVVVNYQSAED-KGKTVAKALTPEQLEQMTALVRETIGFNKERGDSVN 433 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + + F + + ++L + L L++ L AL+ Sbjct: 434 LMNTPFQVDVTPANDVPLWKQPEMLELAKSFAWPVGAVLFAALVLLGLVRPALKGQERPR 493 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 ++ + P A+ ++ + + Sbjct: 494 AIAVAGGSIDALEAEQPERPALPAPAKKDELLPVT-----------------------PE 530 Query: 528 DLRLLH---MIEINEERFAKILRKWARSE 553 LRL + + N A IL+ W E Sbjct: 531 QLRLEEARMLAKENPMAVANILKTWVNGE 559 >gi|326319071|ref|YP_004236743.1| flagellar M-ring protein FliF [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375907|gb|ADX48176.1| flagellar M-ring protein FliF [Acidovorax avenae subsp. avenae ATCC 19860] Length = 568 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 135/570 (23%), Positives = 239/570 (41%), Gaps = 50/570 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + ++L R++ L + I + + +AA P Y L+ L D I LS Sbjct: 21 LQRFSALDRSKRLRFGAGIALLVAAVVAAVVLNRQPDYKVLFSNLSDKDGGAIVAQLSTM 80 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 N+ ++ S+ G +I VP+ V R+ LA QGLP S +G+EL + N FG+T F + + Sbjct: 81 NVPYKYSEGGGAILVPAERVHDVRLRLATQGLPKGSV-TGFELME-TNRFGVTQFQERLN 138 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS--VYKSA 188 R LEGE+ R+IQ++S + +ARVH+ +P+ F + +P+ASV++ Sbjct: 139 FQRGLEGELTRSIQALSSVQSARVHLALPNQNGFFREQQKPSASVLLSLYPGRFLDRTQL 198 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243 I HLVA++VP + V+VLD TGKLL+ A I + LS VQ I+ + Sbjct: 199 AGIVHLVASSVPEMSPSAVSVLDDTGKLLSQSPDTAAGSGSAIDAQQLSYVQQIEQQYTR 258 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY----DPDSKVERSIRLSKDAQRSET 299 I L +G +N ++ V AE++ + + PDS RS ++ + + ++ Sbjct: 259 RILDILEPVVGKNNVKAQVTAEVDFSQSEQTSEQHRPNQTPDSSAVRSQQVVESSGGTQG 318 Query: 300 SQPE-SAVTVEQNMPHV-----------SDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 +QP N P + + K+E +NYE++ T Sbjct: 319 NQPPAGVPGAASNQPPQPSTAPINGANPAPTAGNGQQGQAAGSKRESITNYEVDKTVRVT 378 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSAD-QGKIDSYLAEINKIVSAATGINSRRGDTI 406 + ++R+S AVVVN + E G++ + + ++ +V G N RGD++ Sbjct: 379 RAGSGAIKRVSAAVVVNYQAIAEAAGKAPQAKAFTPEQIEQMTALVRETIGYNKDRGDSV 438 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 I + FL + +++ + + L L++ L A++ ++ Sbjct: 439 NIMNTQFLVDNTPAVELPLWKQPEMIELVRSLGWPVGMSLFAALILLGLVRPAIKGMNQP 498 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 G+ + A+ +A + +D+ Sbjct: 499 PAPAAAVASGRQV-------DAIEADEPERPALAAPTKPEDLIQTPE------------- 538 Query: 527 SDLRLLH---MIEINEERFAKILRKWARSE 553 +RL + + N A IL+ W E Sbjct: 539 -QMRLEEARVLAKENPMAVANILKVWVNGE 567 >gi|163853490|ref|YP_001641533.1| flagellar MS-ring protein [Methylobacterium extorquens PA1] gi|163665095|gb|ABY32462.1| flagellar M-ring protein FliF [Methylobacterium extorquens PA1] Length = 540 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 144/541 (26%), Positives = 254/541 (46%), Gaps = 13/541 (2%) Query: 15 TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF 74 T LG RI +A+V L + F V+ P L+ L + D + + L I + Sbjct: 9 TKLGPARIAAMAAVTLTLVGFFAFVILRVSRPDMGVLFSDLSLQDSSSVIRELDARGITY 68 Query: 75 RISDN-GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 G ++ P + + K R+ A +GLPS GYE+FDK ++F TSF+Q + +R Sbjct: 69 ETKGEMGQTVLAPRADLAKLRMDFAGKGLPSQGG-IGYEIFDKGDAFSSTSFVQNVNHLR 127 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRH 193 A+EGE+AR+I++I + AARVH+V+P+ F + P+A+++++ + AIRH Sbjct: 128 AMEGELARSIRAIGRVQAARVHLVIPERRLFERDREAPSAAIVVKLMGDLDASQVRAIRH 187 Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEMNINKALAA 251 L A+AV L V+++D G+LL E + G I+ + I + +A Sbjct: 188 LAASAVEGLKPERVSIVDERGRLLADGARGAEADGAGALEERQAGIERRMRSQIEEIVAG 247 Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311 +G R V AEL+++ + R +DP+S+V RS + + S T E VTV Sbjct: 248 IVGQGRARVQVTAELDLNRVESRSESFDPESRVVRSTQTRSEN--SLTGGAEGQVTVGNE 305 Query: 312 MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV 371 +P + + P P+ +++ K EE +NYEI+ + T + +L+RLS+AV+V+ Sbjct: 306 LPGANQNQ-PAPQQKDSSQKNEETTNYEISRVTKVETLEGGRLKRLSVAVLVDGVYAPGA 364 Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDI 431 G+ A Q + D+ +A I +V A G + RGD + + ++ F E + Sbjct: 365 DGKPAYQPRSDAEIARIAALVRTAVGYDKVRGDQVEVVNLRFAETPTAAEFSEPGLIQSF 424 Query: 432 LSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTT 491 LS V+ + V +LL + + +R L + ++ A Sbjct: 425 LSPTKEEVMRLVELTVLSLLTLVVLMAVVRPLLRRVLESDAPMALAGPAGALALAGAAGG 484 Query: 492 GLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWAR 551 + +S+N+ + S ++IN + ++ R++ M+ + ++LR W Sbjct: 485 EAPVEIAVRENSTNKFLES------AKINGQIQAETVERVVDMVRASPTETVEVLRNWIH 538 Query: 552 S 552 Sbjct: 539 D 539 >gi|161485650|ref|NP_419721.2| flagellar MS-ring protein [Caulobacter crescentus CB15] gi|221233887|ref|YP_002516323.1| flagellar MS-ring protein [Caulobacter crescentus NA1000] gi|220963059|gb|ACL94415.1| flagellar M-ring protein FliF [Caulobacter crescentus NA1000] Length = 554 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 136/556 (24%), Positives = 251/556 (45%), Gaps = 18/556 (3%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 F S G R+ + V + + +A F+ + LY L++ + + ++ AL Sbjct: 3 SFLGSIRQFGVGRLAAMLGVGAGVVAVLVALVMFMGKEPSELLYSNLDLKEASEVTQALD 62 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 +A I + +GS+I VP V AR+ +A +GL SS S GYE+FD N+ G T F+Q+ Sbjct: 63 QAGIKYETKGDGSTIMVPRDKVASARLMVAGKGLVSSGS-IGYEIFDTNNALGQTDFVQQ 121 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-RAINPSVYKS 187 + R RAL+GE+ RTI+++ G+ + RVH+V+P F + +P+A+V I Sbjct: 122 LNRQRALQGELERTIKAMQGVNSVRVHLVLPKRQLFEEDAEQPSAAVTIGVGSREPSSDM 181 Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINK 247 AI++LV+++VPN+ V V+D GK L+A E + ++ I + Sbjct: 182 VRAIQNLVSSSVPNMKAEKVAVIDQHGKTLSAPSDESLAGKMAQDRKSEVEARIAKTVKD 241 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVT 307 + LG R V AEL+++ +E +DPD +V RS ++ + + + + VT Sbjct: 242 MIEGVLGPGKARVNVTAELDLNRVTTQEERFDPDGQVIRSESTTEASSQENKNDDNAGVT 301 Query: 308 VEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367 N+P + T + + +NYEI+ T + ++++++AV ++ Sbjct: 302 AAANVPGGQGAN-GFQQLGSRTGQNDAVTNYEISKSVTTTVQEPGTIKKIAVAVAIDGVS 360 Query: 368 LTEVLG--RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425 A + + +I ++V A G ++ RGD + +T++ F Q + G + Sbjct: 361 APMAADGKPGAYTPRTAQEIQQIEELVKTAVGFDAERGDQVRVTNIKF--PQPEDQGLEE 418 Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPP 484 + ++ ++ A V ++ + L A+R + N+ G++ PP Sbjct: 419 QGLLAGFDKN--DIMRAAELGVLAVVALLILLFAVRPFIKNLSAPAPGQIALAGPSGGPP 476 Query: 485 ISSAVTTGLMPNDNIALDSSNQDIFSHS--------RNLQSRINSYVSKQSDLRLLHMIE 536 ++ VT + +D S + I R ++I V S R+ +E Sbjct: 477 VTRLVTLADGTQQQVVVDQSGEPIALAGPPVSDIDQRIDIAKIEGQVKASSIKRVSEFVE 536 Query: 537 INEERFAKILRKWARS 552 + + ILR W Sbjct: 537 KHPDESVAILRNWLHE 552 >gi|254517007|ref|ZP_05129065.1| flagellar M-ring protein FliF [gamma proteobacterium NOR5-3] gi|219674512|gb|EED30880.1| flagellar M-ring protein FliF [gamma proteobacterium NOR5-3] Length = 566 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 131/569 (23%), Positives = 228/569 (40%), Gaps = 30/569 (5%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + L F + TR L L + I + M +V P+Y LY + D N + Sbjct: 7 NTLFARFNGFSRQPATRQLALLIGLAASIAMAMGMVQWVVEPNYKPLYGTMAPEDTNDVI 66 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 +L +D+R+ ++VP+ V +AR+ LA G P G+E + GL+S Sbjct: 67 ASLEANGVDYRMDRRSGMVAVPAGDVHRARLLLAGDGYPR-GEGVGFESLYREQEIGLSS 125 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 FM++ RALE E+ARTI ++ + ARVH+ M +F + +P ASVM+ Sbjct: 126 FMEQARFHRALESELARTIGALESVRGARVHLAMAKQSAFLRQREQPAASVMLNLYAGRT 185 Query: 185 Y--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHE 240 + I HLVA++VPNLD V+V+D GKLL+ + E + ++ E Sbjct: 186 LNERQLSGIVHLVASSVPNLDSEQVSVVDQQGKLLSGQGTDEEFGFTQDQFRYSRQLESE 245 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 + I L LG + R+ V A+L+ + Y P+++V RS + S++ S Sbjct: 246 LSGRIVDILEPILGANAVRAQVAADLDFTRVERTLETYAPETRV-RSEQTSEET--SNRL 302 Query: 301 QPESAVTVEQNMPHVS----------------DRKVPLPRSLENTDKKEEQSNYEINTKS 344 N P + D + NYE++ Sbjct: 303 YAGGVPGTLSNEPPIDTTVATVQAAPNVDANIDANAQAGAIPPARTSRRSTINYEMDKTI 362 Query: 345 IATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD 404 L++LSIAVV++ T G ++ + E+ +V A G ++ RGD Sbjct: 363 SHVRETPGALQKLSIAVVLDYIETTADDGTTSRVPMPQERIDEVTSLVREAVGFDADRGD 422 Query: 405 TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 T+++ S F+E ++ S ++ + L+ L L + F+ + L + Sbjct: 423 TVSVISASFVEVPAIEDSVIESSLLE--QDWIWQLAKGLLVLTVLLALVFVVVRPLVKFA 480 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 + G + +A+ G M +D + L Q + Sbjct: 481 AVPVPMMQSPQGLAGPGQQQPVAALGGGGMADDQVTLGGQGQMGLPGTAGAGGGGYQQQL 540 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSE 553 + + + +R A+++R W + Sbjct: 541 QMA----RSVAAGEPDRAAQVVRGWVSDD 565 >gi|317153718|ref|YP_004121766.1| flagellar M-ring protein FliF [Desulfovibrio aespoeensis Aspo-2] gi|316943969|gb|ADU63020.1| flagellar M-ring protein FliF [Desulfovibrio aespoeensis Aspo-2] Length = 531 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 136/556 (24%), Positives = 252/556 (45%), Gaps = 44/556 (7%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 ++ F+ T+ R +++ + + ++ F +++N P Y L L D +RI Sbjct: 11 KIHGFWSDRTAAQR---ILIGGLAVSVVIAFALMIYWMNKPDYKVLMTNLYPEDASRIVG 67 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L + + DNG +I VP+ V + R+ +A +G G+E+FD V G T F Sbjct: 68 MLQAEKEQYVLDDNGKTILVPADRVYELRLKVAGEG-NLHGQGIGFEIFDNVQ-IGQTDF 125 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 +Q I RAL+GE++RTI I ARVH+V+P F + P+AS++++ + + Sbjct: 126 VQHINFQRALQGELSRTITEFPQIEQARVHLVIPKKSLFIEDQMPPSASIILQLKDNAKL 185 Query: 186 --KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHE 240 + + +LV+ AV L+ ++TV D G+ L E + + L I++ Sbjct: 186 AANEVQGVVNLVSMAVEGLEPKNITVTDMKGRPLYTPEDDSGGLALSNTQLEYKADIENT 245 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 + I + L +G + + V A+L+ + IR+ YDPD V RS S++ Sbjct: 246 TQRRIMELLGPVVGPEKVIARVNADLDFSQKTIRKESYDPDGSVVRSETRSEETT----- 300 Query: 301 QPESAVTVEQNMPHVSDRKVP--LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 A ++ P + R R+ +++ ++ +N+EIN + +L+RLS Sbjct: 301 --AGAASLAGGEPDANFRGDGFTGTRTTQDSTRESRTTNFEINKQEENIIAPVGELKRLS 358 Query: 359 IAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 +AV+V+ TE G+S + L I +++ A G +S RGD+I ++++ F E Sbjct: 359 VAVIVDGTWQTEEDTGKSVYVPRSAEELERIKNLIAGAVGFDSVRGDSIEVSNISFGEPS 418 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 L++ ++ + ++ R +N L+ + +LV + AL R + + + E+ G Sbjct: 419 LYDGDSLMRTMLEYAQRLGKPFLNGLLIFLFLILVVRPVIMALIR-PRVAEQEIEEMAGL 477 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 P S + D A+D SR L++ N V + + Sbjct: 478 ------PGSQRLALEEEEIDEEAMD--------MSRRLENAKNHAV---------QLSDD 514 Query: 538 NEERFAKILRKWARSE 553 N ++ +L+ W E Sbjct: 515 NMDQAVHLLKSWLAQE 530 >gi|307546949|ref|YP_003899428.1| flagellar MS-ring protein [Halomonas elongata DSM 2581] gi|307218973|emb|CBV44243.1| flagellar MS-ring protein [Halomonas elongata DSM 2581] Length = 581 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 130/574 (22%), Positives = 222/574 (38%), Gaps = 43/574 (7%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 F + L + ++ L I + A + ++P Y LY L +D I L Sbjct: 18 SFAQLKRQLRGSPLVALLIAGAASIAVVAALMLWASAPQYRVLYSNLSEADGGSIIAELD 77 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 +I +R S G ++ VP V K R+ LA QGLP N G EL + +FG++ F ++ Sbjct: 78 SRSIPYRFSQGGQALMVPGDQVHKLRLQLAEQGLPKGG-NVGLELME-DQAFGISQFAEQ 135 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--K 186 I R LEGE+AR+++S+ + ARVH+ + F + ASV++ V Sbjct: 136 INYQRGLEGELARSMESLGPVAEARVHLALAKDSVFVRRREPAKASVVLTLEPGRVLGKG 195 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-NILGKSLSIVQAIQHEIEMNI 245 A+ H+V+++VP+L VTVLD G+LL+ + + G L V ++ I Sbjct: 196 QVNAVAHMVSSSVPDLAAEAVTVLDQNGRLLSRPDGGSLGLDGTQLDYVAEVERAYRQRI 255 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP--E 303 L LG R+ V A+L+ ++ Y P+ + S+ Sbjct: 256 EAILTPILGRGKVRAQVTAQLDFSRREETAERYTPNQPPNEAAVRSRQTSLDLNGDDLAN 315 Query: 304 SAVTVEQNMPHV-----------------------SDRKVPLPRSLENTDKKEEQSNYEI 340 N P ++ + +++ NYE+ Sbjct: 316 GVPGALSNTPPGFAESPIATAPEDGEDAAADADQETNDTASQASQAQRRLSRDDVINYEV 375 Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLT--EVLGRSADQGKIDSYLAEINKIVSAATGI 398 + + H ++ERLS AVVV+ + + G D LA++ ++V A G Sbjct: 376 DRQVSHVEHQRGRIERLSAAVVVDYRQTPAEQPDGEPTAAPLDDDELAQVKRLVQQALGF 435 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + RGD +T+ + F + + ++ F LV L LL L Sbjct: 436 SEARGDQVTVVNRPFADESSSQAELAWWQRPELQRLAFGLGRYLLVGLALLLLYLLLLRP 495 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 +RR E + +SP P +++ S +D + + R Sbjct: 496 LIRRYT--------ERPLPAAVSPTPSIDTRIGDEPSDEDAT---SGEDEPASHATPRRR 544 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 + +Q+ L M + + A I+R W Sbjct: 545 RKASAYEQNLNDLREMAQEDPRMVAMIVRGWMNK 578 >gi|171057703|ref|YP_001790052.1| flagellar M-ring protein FliF [Leptothrix cholodnii SP-6] gi|170775148|gb|ACB33287.1| flagellar M-ring protein FliF [Leptothrix cholodnii SP-6] Length = 576 Score = 382 bits (981), Expect = e-103, Method: Composition-based stats. Identities = 132/569 (23%), Positives = 228/569 (40%), Gaps = 46/569 (8%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 F L R L LA +L I L A F+ + L+ L D I L++ Sbjct: 23 FAARLAGLPLGRKLALAGGVLALIGLLAMAVFWNTGNNDKVLFANLSDKDGGAIVAQLTQ 82 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 N+ ++ ++ G++I VP+ V R+ LA GLP S G+EL D FG T F + + Sbjct: 83 MNVPYKFTEGGTAILVPAEKVHDVRLKLAQAGLPK-GSTVGFELMDNA-RFGTTQFQERL 140 Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE 189 R LEGE+ R+I ++S + AARVH+ +P+ F + +P+ASV++ A+ Sbjct: 141 NFQRGLEGELVRSITALSAVEAARVHLALPNQNGFFRDQQKPSASVLLTLHPGRTLDRAQ 200 Query: 190 --AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--------RNILGKSLSIVQAIQH 239 I HLV+A+V L+ V+VLD +G LL + + L V I+ Sbjct: 201 LAGIVHLVSASVAELNPKAVSVLDQSGSLLAGPPEGMAGAAGGTNGLDAQQLQYVNQIET 260 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK----VERSIRLSKDAQ 295 I L LG DN R+ V AE++ + + P+ RS + ++ + Sbjct: 261 VYTKRILDILEPVLGRDNLRAQVSAEIDFSQTESTSEEFKPNQGDAPAAVRSAQSTEQSN 320 Query: 296 RS----------ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSI 345 +++QP + T N + T ++E +NYE++ Sbjct: 321 PGAAMPAGVPGAQSNQPPTPATAPINGQAQQMQAAQGGVGSNGTARREAVTNYEVDKTVR 380 Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 T + +++RLS AVVVN +T+ G L ++ +V G + RGD+ Sbjct: 381 VTRAASGQVKRLSAAVVVNSRSVTDKKGNVQVVPLTPEELDKLTALVQETVGFSKDRGDS 440 Query: 406 ITITSMDFLENQLFNSGTV---QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 + + + F ++ T Q D++ + AL+ + A+R Sbjct: 441 VKVINAPFKVDKPVEDTTPLWKQPEVQDMVRTLALPLGLALL-------ALIIVFGAIRP 493 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 + +++ A+ ++A N + + + Q R+ Sbjct: 494 ALKAAQPPEPVQLVDAVVDDAQELPALEGSAEEAAHLAAGHMNA-LPAPEDDAQRRLE-- 550 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWAR 551 + M + N A I+R W Sbjct: 551 -------QARKMAKDNPAAVANIVRGWVS 572 >gi|308273184|emb|CBX29787.1| hypothetical protein N47_F14820 [uncultured Desulfobacterium sp.] Length = 520 Score = 382 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 139/561 (24%), Positives = 240/561 (42%), Gaps = 52/561 (9%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + D +QF SL + + ++ +L+ I F N Y L+ L D Sbjct: 1 MNDSAVQFLNFIKSLPLAKKITISVTVLLLIAAFAVMFMLSNQVDYRVLFNNLSAQDAGA 60 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L E NI ++I GS I VPS V + R+ + GLP G+E+FDK + + Sbjct: 61 IIEKLKEKNIPYKIEGGGSLILVPSDQVYELRLKMVGDGLPRDG-QIGFEIFDKTD-YKT 118 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T F+Q + RAL+GE+ARTI + ++R+ IV+P F + +ASV++ + Sbjct: 119 TQFVQSLNYQRALQGELARTINCFDEVKSSRIFIVLPKETLFAEDTKPASASVLLDLKSN 178 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN----ILGKSLSIVQAIQ 238 + AI HLVA+AV L+ +VTV+D+ G+++ + L I+ Sbjct: 179 LPPERLSAIVHLVASAVEGLEPEEVTVVDTKGRVIFKGGNGNQTNTFLNNSQLDYKSKIE 238 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 EI N+ L +G N V A+++ + + E YDP + V RS R +++ R+ Sbjct: 239 SEISRNVQSMLEGIIGSGNAIVRVTADIDFNKTSMNEEEYDPAAAVVRSKRDIEESFRAG 298 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ-SNYEINTKSIATTHDNYKLERL 357 + ESA ++ V +P +N +K++ +NYEIN + + ++RL Sbjct: 299 NASSESAPSLINQRAGV----IPAESVDQNGKRKKDTLTNYEINKVTRVISKPAGTIKRL 354 Query: 358 SIAVVVNKGRLTEVLGRSADQ----GKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 S+A V++ T D+ + D L + IV A G N R D I+++S+ F Sbjct: 355 SVAAVIDGRYETVKSADGTDKRNYIPRTDEELKKFEDIVKGAMGYNEDREDKISVSSIPF 414 Query: 414 LE--NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 E + FM +L + ++IN L+ F L ++ L N Sbjct: 415 SESLPGDIQMASEPFDFMALLKDYKNSLIN-----FCLLIAVFFVL--VKPLIN------ 461 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 T MP + N + +++ +K ++ Sbjct: 462 ------------------TLKNMPKEQFV----NVKEIPAAVQSNAQLPGVKTKGQIEKV 499 Query: 532 LHMIEINEERFAKILRKWARS 552 + + + N E+ +++R W Sbjct: 500 IEISKSNPEKTEQLIRGWMNE 520 >gi|323698502|ref|ZP_08110414.1| flagellar M-ring protein FliF [Desulfovibrio sp. ND132] gi|323458434|gb|EGB14299.1| flagellar M-ring protein FliF [Desulfovibrio desulfuricans ND132] Length = 530 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 119/553 (21%), Positives = 242/553 (43%), Gaps = 39/553 (7%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 ++ + T R +++ + ++ F +++N P Y L L D +R+ Sbjct: 11 KMQGIWADRTVSQR---ILIGGLTAAVVISFALMIYWMNKPDYRVLMTNLYPEDASRVVG 67 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L D+++ +NG++I VP+ V + R+ +A +G G+E+FD+V G T F Sbjct: 68 MLQAQKEDYKLENNGTTIMVPADRVYELRLKVAGEG-NLHGQGIGFEIFDEVQ-IGQTDF 125 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 +Q + RAL+GE+ARTI + ARVH+V+P F + P+AS++++ Sbjct: 126 VQHVNYQRALQGELARTITEFPIVDKARVHLVIPQKSLFIEDQVAPSASIVLQLKGEGKL 185 Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHE 240 + + I +LV+ AV L+ ++TV D G L E + + L ++ + Sbjct: 186 EPDEIKGIVNLVSMAVEGLEPKNITVTDMKGHPLYTPEDQSTGLAMSNAQLLHKADVEGK 245 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 ++ I + L +G D + V A+L+ + +R+ VYDP+S V RS +++ Sbjct: 246 LQRRILELLGPAVGPDKVIARVNADLDFSQRTVRKEVYDPNSAVVRSETRNEETTSGAAD 305 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 A V + ++ +++ ++ +N+EI+ + +L+RL++A Sbjct: 306 LGGGAPDV-----NFRGDGFSGTKTTQDSTRESRTTNFEIDKQEENIITPVGELKRLTVA 360 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 V+V+ T+ G+ + + I ++ A G +++RGDTI ++++ F E QL + Sbjct: 361 VIVDGTWQTDADGKQVYVPRSAEEINRIRTLIENAVGFDAQRGDTIEVSNISFGEPQLAD 420 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 ++ + ++ R +N L+ + +LV + AL R + + + E+ G Sbjct: 421 GDSLMRTMLEYAQRLGKPFLNGLLIFLFLILVVRPVVMALIR-PRVAEQEIEEMAG---- 475 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 +P + + N+ + + N + Sbjct: 476 -------------LPGSERLALEEEEMDEEALDASRRLENAKNHAI------QLSDENID 516 Query: 541 RFAKILRKWARSE 553 + +L+ W E Sbjct: 517 QAVHLLKTWLTQE 529 >gi|268316357|ref|YP_003290076.1| flagellar M-ring protein FliF [Rhodothermus marinus DSM 4252] gi|262333891|gb|ACY47688.1| flagellar M-ring protein FliF [Rhodothermus marinus DSM 4252] Length = 533 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 133/568 (23%), Positives = 233/568 (41%), Gaps = 49/568 (8%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + +QL QF + R L L +V + I+L + ++ P Y L+ L SD +R Sbjct: 1 MFEQLKQFLSRLSPGQR---LALGAVTIGSILLLLGIAYWAGRPEYALLFGGLSPSDASR 57 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L E N+ +++ + G++I VP V + R+ A +GL S GYELFD+ N+ G+ Sbjct: 58 IVETLQEENVPYQLKEGGTAIWVPRDRVYELRLRFAGEGLV-SDGPVGYELFDQ-NTLGM 115 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T FMQ + RALEGE+ARTI S+ + A+VH+V+P+ FR+ P+ASV++ + Sbjct: 116 TDFMQRLNYKRALEGELARTIMSLQQVELAKVHLVLPERSPFRETQVAPSASVLLSLKSG 175 Query: 183 --SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER---NILGKSLSIVQAI 237 + + I LVA AV LD +VTVLD+ G LL+ + + L + QA+ Sbjct: 176 ARLTEEQIDGITALVAGAVEGLDPANVTVLDARGNLLSNPDAGNAELALSSTQLKLRQAL 235 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + + L LG N V A LN D + DP+S S ++ Sbjct: 236 EAHLTEKGQSMLDRVLGPGNAIVRVSATLNFDQAVTERQLIDPESATVISEERLEE---- 291 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 E + NYE++ + +E L Sbjct: 292 ------------------------AGTGGEGSSASSMVRNYELSRTVERIQQNGGDVEYL 327 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 +++V++N+ G + + L EI ++V A G RGD I F + Sbjct: 328 TVSVILNQRFEEGPDGTPQPRPYTEDELREIEELVKNAVGFRPERGDRFAIHQTRF--DT 385 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 + Q + + ++ L +L +RR+ + + +G Sbjct: 386 QIDDQIAQELREQRRQEQLNLYLRYGLMVLALGLAVWLLRALVRRMGELAGETQVLIGRV 445 Query: 478 SILSPPPISSAVTTGLMPNDNIA---LDSSNQDIFSHSRNLQSRINSYVSKQSDLR---- 530 + +G + + S++++ SR+++ + + Sbjct: 446 DQEHGALGAPEGASGALQGKAVPGLESGESDEELVLIDDIYTSRLSAEAKARLKAKHILF 505 Query: 531 --LLHMIEINEERFAKILRKWARSEIED 556 + + E A+I+R W ++++D Sbjct: 506 EEVQKQVNEKPEEAAEIIRSWLVADMQD 533 >gi|226944512|ref|YP_002799585.1| flagellar M-ring protein [Azotobacter vinelandii DJ] gi|226719439|gb|ACO78610.1| flagellar M-ring protein [Azotobacter vinelandii DJ] Length = 576 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 131/540 (24%), Positives = 229/540 (42%), Gaps = 47/540 (8%) Query: 44 NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP 103 P Y L+ L+ +D RI L I +R+S+ G S+ VP+ + R+ LA QGLP Sbjct: 54 REPEYRVLFANLDEADGGRIIGELDRRAIPYRLSEGGHSLLVPADQLHTLRLQLAEQGLP 113 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 N G+EL DK +FG++ F ++I R LEGE+AR+I+S+ + ARVH+ M Sbjct: 114 QGG-NVGFELLDK-QAFGVSQFAEQINFQRGLEGELARSIESLGPVSRARVHLAMAKQSV 171 Query: 164 FRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE 221 F + ASV++ AI HLV+++VP L + VTV+D G+LL+ Sbjct: 172 FVREREPARASVVLNLQPGRELGESQVNAIAHLVSSSVPGLSIDAVTVVDQNGRLLSRQG 231 Query: 222 MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD 281 R++ G L + ++ + I LA LG N R+ VVA+++ +++ Y P+ Sbjct: 232 GARDLDGTQLDYIDEVERSYQRRIENILAPILGAQNVRAQVVAQIDFASREQTAERYAPN 291 Query: 282 SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD----------- 330 + + S+ + + E A V + + P P N Sbjct: 292 QQPGEAAVRSQQLSENLSGGTELARGVPGALTNSPPNPPPPPAPAANETTQTGNAAGTGG 351 Query: 331 ----------------KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR 374 ++ +NYE++ + ++RLS AVVVN + G+ Sbjct: 352 TGQAAAAAAEKAPTTLSRDNTTNYEVDHSVEHVQYRRGSVQRLSAAVVVNYRDAIK-DGQ 410 Query: 375 SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSR 434 ++ + LA I+++V A G RGD + I + F ++ + + + Sbjct: 411 TSREPLSQEELARIDRLVRQAMGFTDSRGDQLEIMNSPFADSLVVD--QQEWWKTPEFYN 468 Query: 435 HFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLM 494 ++ L+ LL+ + L L+R H A + ++ + A + Sbjct: 469 LATSLSRYLLVAFIALLLWLMVLRPLKRRHREKLAAEASARAEAAEAAQLALEASRVPAL 528 Query: 495 PNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + S R+L+ + S + +Q+ L M + + A I+R W + E Sbjct: 529 AAEE-----------SQRRDLRRK--SPIYEQNLQSLREMAKEDPRLVAMIVRGWMKKEE 575 >gi|320529385|ref|ZP_08030473.1| flagellar M-ring protein FliF [Selenomonas artemidis F0399] gi|320138351|gb|EFW30245.1| flagellar M-ring protein FliF [Selenomonas artemidis F0399] Length = 526 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 129/560 (23%), Positives = 242/560 (43%), Gaps = 53/560 (9%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ L ++ R R ++L S + + ++F + ++ + P L+ +E D ++ Sbjct: 6 ERGLAMWERFDK--RQRYIMLGSALAILALIFGLSFWYGSKPDMVPLFTDMETKDAGEVA 63 Query: 65 VALSEANIDFRISD--NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 L EA I + + D NG++I VP++ V +AR++LA QGLP + G+E+FD + G+ Sbjct: 64 NQLREAKISYEVQDGKNGTTILVPTTNVHEARLNLATQGLPRGNK--GFEIFD-DSKLGV 120 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T F + ++AL+GE+ RTI+ I + ARVHIV+P+ ++K TAS+M+R Sbjct: 121 TEFQNRVNYLQALQGELTRTIEQIDAVEKARVHIVLPEDSLYKKEEKPATASIMLRLKPG 180 Query: 183 --SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI-----LGKSLSIVQ 235 K + I +L A +V L ++T++D TGK+L + + L + + Sbjct: 181 TELTKKEIKGIVNLAAHSVKGLTPENITIVDDTGKILNDPDDQDEKSVGVKTLTQLDMTR 240 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSK 292 +Q IE + L LG + V EL+ D + + + P D+ + RS + Sbjct: 241 KVQDNIEKKVQSLLDQTLGEGRAVARVSVELDFDDRLTDKQTFTPVVDDAGIIRSQQDIS 300 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 + ++ P V+ N+P +++ + +KKE NYEIN + Sbjct: 301 ENYTGSSTNPGGPAGVQSNVPGYVEQE---SNANAQYEKKESTKNYEINEERQHVIASPG 357 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 + RL++AV+VN I + VS+A GIN RGDTI++ + Sbjct: 358 SIRRLTVAVLVNDDV-------------TQPQQESILRTVSSAAGINQARGDTISVEPLP 404 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F + + + D R F + ++ ++ ++ L +RL Sbjct: 405 FSKEAAERRAAEEQAEKDRQDRIFYAQVGIVLLIIALIVGGILMYRRKKRLER------- 457 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 E ++ + + + + +++ Q+ LL Sbjct: 458 EAAEEAQRIEEERIAEERAAAIAAGQVEEEDLSEEEQQQMNQKQA-------------LL 504 Query: 533 HMIEINEERFAKILRKWARS 552 +I+ E A +++ W Sbjct: 505 ALIDAKPEEVALLVKTWLSE 524 >gi|255021373|ref|ZP_05293421.1| Flagellar M-ring protein fliF [Acidithiobacillus caldus ATCC 51756] gi|254969236|gb|EET26750.1| Flagellar M-ring protein fliF [Acidithiobacillus caldus ATCC 51756] Length = 568 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 129/565 (22%), Positives = 229/565 (40%), Gaps = 36/565 (6%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 Q+ + L R + +V+ + + Y LY L D + L Sbjct: 19 QWQRRWQELPGNRRFAILAVLAAIFAGIVVTLLWSRPQGYGVLYTNLSNRDGGEVIAQLQ 78 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 + N+ FRI+D G+ ISVP++ V R+ LAA GLP G+E+ D G + F++ Sbjct: 79 KLNVPFRITDGGAVISVPANEVYATRMKLAAVGLPR-GEGVGFEILDHE-PMGTSDFVEH 136 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-- 186 + RALEG + RTI S+S + A+VH+ +P F +PTASV++ Sbjct: 137 VNYQRALEGSLERTIASLSAVERAKVHLAIPKPSVFLSQEEKPTASVLVSLYPGRELSAA 196 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQAIQHEIEMNI 245 I HLVAA+VP L +VTV+D G LL+A + + L+ +A+ E I Sbjct: 197 QVAGIVHLVAASVPGLTDKNVTVVDQQGNLLSAQGGNDLGLQPGQLAYQRAVDRAYEHRI 256 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE------- 298 + LA +G R AV A+++ + + Y + + + Sbjct: 257 EQILAPIVGAGGVRVAVSADIDFSHSESSSVTYGNHQILSQQQNVRSSTGGGGPYGVPGA 316 Query: 299 -TSQPESAVTVEQNMPHVSDRKVP--------LPRSLENTDKKEEQSNYEINTKSIATTH 349 ++QP P VS L + +N++++ + T + Sbjct: 317 LSNQPPGVAIAPLTAPTVSTLSPGDLIALAPTLKALAPTESSSDSTTNFDVDQTIVHTVN 376 Query: 350 DNYKLERLSIAVVVNKG-RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 ++RLS+AV+VN T + G + + L +I ++V A G +++RGDT+ + Sbjct: 377 PVGSVKRLSVAVLVNDRLEGTGLGGAKQAKPLTAAQLQQIQQLVEDAIGYDAKRGDTVKV 436 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 +M F + +S + + L+ ++ + GL +R L I Sbjct: 437 VNMPFSGTEAVSSHLP--WWQQEWFLALLHGTLRYLVLLLLAILLYFGL--IRPLLRIRG 492 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 ++ + S+ A G +A D + + N + Sbjct: 493 RREPTLAADSV--------ARDGGQGEAGEVAADRGQPGPTTAREPVSMPANPLETDLYV 544 Query: 529 LRLLHMIEINEERFAKILRKWARSE 553 R ++ + R A+++++W SE Sbjct: 545 AR--QLVMQDPGRAAQVVKEWLSSE 567 >gi|238927418|ref|ZP_04659178.1| flagellar M-ring protein FliF [Selenomonas flueggei ATCC 43531] gi|238884700|gb|EEQ48338.1| flagellar M-ring protein FliF [Selenomonas flueggei ATCC 43531] Length = 526 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 133/562 (23%), Positives = 240/562 (42%), Gaps = 53/562 (9%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ L +K R R ++L S +++ ++F + ++ + P L+ +E D ++ Sbjct: 6 ERGLALWKRFDK--RQRYIMLGSALVILALIFGLSFWYGSKPDMVPLFTDMETKDAGEVA 63 Query: 65 VALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 L E+ I + I +N G++I VP++ V +AR++LA QGLP + G+E+FD + G+ Sbjct: 64 NQLRESKISYEIQENKSGTTILVPTANVHEARLNLAVQGLPRGNK--GFEIFD-DSKLGV 120 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN- 181 T F + ++AL+GE+ RTI+ I + ARVHIV+P+ ++K TAS+M+R Sbjct: 121 TEFQNRVNYLQALQGELTRTIEQIEAVDKARVHIVLPEDSLYKKEEKPATASIMLRLKPN 180 Query: 182 -PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI-----LGKSLSIVQ 235 K + I +L A +V L ++T++D TGK+L + + L + + Sbjct: 181 TELTKKEIKGIVNLAAHSVKGLTPENITIVDDTGKILNDPDDQDEKGLGVKTITQLDMTR 240 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSK 292 +Q IE I L LG + V EL+ D + + P DS + RS + Sbjct: 241 KMQDSIEKKIQTLLDQTLGEGRAFARVSLELDFDDRLTDRQTFTPVVDDSGIVRSQQDIS 300 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 ++ ++ P V+ N+P +++ + +KKE NYEIN + Sbjct: 301 ESYTGSSTNPGGPAGVQSNVPGYVEQESNANAA---YEKKESTKNYEINEERQHVIASPG 357 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 + R+++AV+VN I + VS+A GIN RGDTI++ + Sbjct: 358 SIRRMTVAVLVNDDV-------------TQPQQESILRTVSSAAGINQARGDTISVEPLP 404 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F + D R F + A++ ++ ++ L +RL Sbjct: 405 FSTEAAERRAAELQAEKDRQDRIFYMQVGAVLLIIALIVAAVLMYRRKKRLER------- 457 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 +A + + +A + + L LL Sbjct: 458 -------------EAAEEAQRLEEERLAEERAAAIAAGEVEEEDLSEEEQQQMNQKLALL 504 Query: 533 HMIEINEERFAKILRKWARSEI 554 +I+ E A +++ W E Sbjct: 505 ALIDSKPEEVALLVKTWLTEEE 526 >gi|125525107|gb|EAY73221.1| hypothetical protein OsI_01094 [Oryza sativa Indica Group] Length = 575 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 124/491 (25%), Positives = 218/491 (44%), Gaps = 26/491 (5%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + ++L R++ L + I + + +AA P Y L+ L D I LS Sbjct: 21 LQRFSALDRSKRLRFGAGIALLVATVVAAVVLNRQPDYKVLFSNLSDKDGGAIVAQLSTM 80 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 N+ ++ S+ G +I VP+ V R+ LA QGLP S +G+EL + N FG+T F + + Sbjct: 81 NVPYKYSEGGGAILVPAERVHDVRLRLATQGLPKGSV-TGFELME-TNRFGVTQFQERLN 138 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS--VYKSA 188 R LEGE+ R+IQ++S + +ARVH+ +P+ F + +P+ASV++ Sbjct: 139 FQRGLEGELTRSIQALSSVQSARVHLALPNQNGFFREQQKPSASVLLSLYPGRFLDRTQL 198 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243 I HLVA++VP + V+VLD TGKLL+ A I + LS VQ I+ + Sbjct: 199 AGIVHLVASSVPEMSPSAVSVLDDTGKLLSQSPDTAAGSSGAIDAQQLSYVQQIEQQYTR 258 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY----DPDSKVERSIRLSKDAQRSET 299 I L +G +N ++ V AE++ + + PDS RS ++ + + ++ Sbjct: 259 RILDILEPVVGKNNVKAQVTAEVDFSQSEQTSEQHRPNQTPDSSAVRSQQVVESSGGTQG 318 Query: 300 SQPE-SAVTVEQNMPHV-----------SDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 +QP N P + + K+E +NYE++ T Sbjct: 319 NQPPAGVPGAASNQPPQPSTAPINGANPAPTAGNGQQGQAAGSKRESITNYEVDKTVRVT 378 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSAD-QGKIDSYLAEINKIVSAATGINSRRGDTI 406 + ++R+S AVVVN + E G++ + + ++ +V G N RGD++ Sbjct: 379 RAGSGAIKRVSAAVVVNYQAIAEAAGKAPQAKAFTPEQIEQMTALVRETIGYNKDRGDSV 438 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 I + FL + +++ + + L L++ L A++ ++ Sbjct: 439 NIMNTQFLVDNTPAVELPLWKQPEMIELAKSLGWPVGMSLFAALILLGLVRPAIKGMNQP 498 Query: 467 DDAKKGEVGGK 477 G+ Sbjct: 499 PAPAAAVAAGR 509 >gi|332284042|ref|YP_004415953.1| flagellar MS-ring protein [Pusillimonas sp. T7-7] gi|330427995|gb|AEC19329.1| flagellar MS-ring protein [Pusillimonas sp. T7-7] Length = 563 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 129/559 (23%), Positives = 224/559 (40%), Gaps = 78/559 (13%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ LE D I AL++ NI +++S G++I VP + V + R+ LA Q Sbjct: 41 MWARTPDYGVLFSNLEDRDGGAIVAALTQQNIPYQLSSTGNAILVPRNKVHEVRLQLAQQ 100 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP +G+EL D+ FG + F ++I RALEGE+ +IQS+ + +ARVH+ +P Sbjct: 101 GLPRGG-ETGFELLDQT-RFGASQFTEQINYQRALEGELVSSIQSMHAVQSARVHLAIPR 158 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + PTASV++ AI LV+++VP+L V+V+D G+LLT Sbjct: 159 ESLFVRDRQPPTASVLLTLYPGRSLSDAQVAAITWLVSSSVPHLSADKVSVVDQNGRLLT 218 Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 E G +++ I+ I + +G N R+ V A+++ ++ VY Sbjct: 219 NLNGEAGADGTRRNLINDIEQRTVQRILTLITPLVGPGNVRAQVSADVDFAQREQTSEVY 278 Query: 279 DPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVSD------------------ 317 P+ K + S+ S PE N P ++ Sbjct: 279 RPNQKPGEAAVRSEQTSSSVQHNVLPPEGIPGALTNQPPLNAVAPIVTPPAPGAANPNDP 338 Query: 318 -------------------RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 + + + NYE++ L RLS Sbjct: 339 NAAPDAAPDAAQNPNGNVLAGGENLQQGTGNSRSDATINYEVDRSITHVKDPVGSLRRLS 398 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 AVVVN +V G++ + LA++N +V A G + RGDT+++ + F ++ Sbjct: 399 AAVVVNYR---DVDGKAT--PLPEEELAKLNDLVKQAMGYSPARGDTLSVVNSQFSDD-- 451 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 + I + ++ ++ V LLV L + L + A++ + + Sbjct: 452 -TPAAAPIWQNPIYLEYAMQLLQYVLAGVALLLVWRLIIKPLLADNEASKAQRQALADEE 510 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 N++ + + S + Y + R M E + Sbjct: 511 ------------------------DKNREAIAAAERRASEMTRYEENMATAR--AMAEKD 544 Query: 539 EERFAKILRKWARSEIEDR 557 A +LR W ++ +R Sbjct: 545 PRAVAMVLRSWMENKDGNR 563 >gi|163856458|ref|YP_001630756.1| flagellar MS-ring protein [Bordetella petrii DSM 12804] gi|163260186|emb|CAP42488.1| flagellar M-ring protein FliF [Bordetella petrii] Length = 559 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 119/552 (21%), Positives = 217/552 (39%), Gaps = 76/552 (13%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y L+ L+ D I AL + N+ +R S +G ++ VP+ V R+ LA Q Sbjct: 45 MWGREPDYKVLFANLDDRDGGAIVSALGQMNVPYRFSGDGRALLVPADRVYATRMQLAGQ 104 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S G+EL D FG + F ++I R LEGE+AR+I++++ + +ARVH+ +P Sbjct: 105 GLPRGGS-VGFELLDNA-RFGASQFAEQINYQRGLEGELARSIEAMNTVQSARVHLALPR 162 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + PTASV++ A+ LVA++VP+L +++++D G+LL+ Sbjct: 163 QSLFVRDRQAPTASVLLHLYPGRSLGDAQVAAVAWLVASSVPDLTAENISIVDQNGRLLS 222 Query: 219 ANEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 A E R + + + I+ I L +G N ++ AE++ ++ V Sbjct: 223 APLGEGRGLDADQSRLRRDIEQRTVERILTILNPLVGPGNVQAQASAEMDFARREQTSEV 282 Query: 278 YDPDSKVERSIRLSKDAQRS--------------ETSQPESAVTVEQNMPHVSDRKVPLP 323 Y P+ + ++ SK S ++QP +A P + + Sbjct: 283 YRPNQEPGQAAVRSKQTSDSLQTGIDPAQGVPGALSNQPPAAAQAPIVNPPAAPQAAQGG 342 Query: 324 RSL---------------------ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 + ++ + NYE++ L+RLS+AVV Sbjct: 343 QPGQLAQAGQNAAQGAATQAAPRLPTNNRNDATINYEVDRTISHVKQPVGMLKRLSVAVV 402 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 VN Q + L ++ +V A G + RGD++ + + F + + Sbjct: 403 VNYL----PDSSGEPQPLPEEELTKLTNLVREAMGYSEARGDSLNLVNSQFNDKPVKPPF 458 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482 +D++ L ++ G L +L LR + L+P Sbjct: 459 WRDPELLDLVK-------TVLAWVFGLALALWL-YRRLRP------------AVSNYLNP 498 Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542 P D ++ Q++ ++ + + R M + Sbjct: 499 PV------------DPEEAEARRQEMQREAQAAARAKEVNRYEDNLQRARDMATKDPRAV 546 Query: 543 AKILRKWARSEI 554 A ++R W + Sbjct: 547 AMVMRAWMTQDE 558 >gi|313895975|ref|ZP_07829529.1| flagellar M-ring protein FliF [Selenomonas sp. oral taxon 137 str. F0430] gi|312975400|gb|EFR40861.1| flagellar M-ring protein FliF [Selenomonas sp. oral taxon 137 str. F0430] Length = 526 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 129/560 (23%), Positives = 242/560 (43%), Gaps = 53/560 (9%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ L ++ R R ++L S + + ++F + ++ + P L+ +E D ++ Sbjct: 6 ERGLAMWERFDK--RQRYIMLGSALAILALIFGLSFWYGSKPDMVPLFTDMETKDAGEVA 63 Query: 65 VALSEANIDFRISD--NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 L EA I + + D NG++I VP++ V +AR++LA QGLP + G+E+FD + G+ Sbjct: 64 NQLREAKISYEVQDGKNGTTILVPTTNVHEARLNLATQGLPRGNK--GFEIFD-DSKLGV 120 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T F + ++AL+GE+ RTI+ I + ARVHIV+P+ ++K TAS+M+R Sbjct: 121 TEFQNRVNYLQALQGELTRTIEQIDAVEKARVHIVLPEDSLYKKEEKPATASIMLRLKPS 180 Query: 183 --SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI-----LGKSLSIVQ 235 K + I +L A +V L ++T++D TGK+L + + L + + Sbjct: 181 TELTKKEIKGIVNLAAHSVKGLTPENITIVDDTGKILNDPDDQDEKSVGVKTLTQLDMTR 240 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSK 292 +Q IE + L LG + V EL+ D + + + P D+ + RS + Sbjct: 241 KVQDNIEKKVQSLLDQTLGEGRAVARVSVELDFDDRLTDKQTFTPVVDDAGIIRSQQDIS 300 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 + ++ P V+ N+P +++ + +KKE NYEIN + Sbjct: 301 ENYTGSSTNPGGPAGVQSNVPGYVEQE---SNANAQYEKKESTKNYEINEERQHVIASPG 357 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 + RL++AV+VN I + VS+A GIN RGDTI++ + Sbjct: 358 SIRRLTVAVLVNDDV-------------TQPQQESILRTVSSAAGINQARGDTISVEPLP 404 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F + + + D R F + ++ ++ ++ L +RL Sbjct: 405 FSKEAAERRAAEEQAEKDRQDRIFYAQVGIVLLIIALIVGGILMYRRKKRLER------- 457 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 E ++ + + + + +++ Q+ LL Sbjct: 458 EAAEEAQRIEEERIAEERAAAIAAGQVEEEDLSEEEQQQMNQKQA-------------LL 504 Query: 533 HMIEINEERFAKILRKWARS 552 +I+ E A +++ W Sbjct: 505 ALIDAKPEEVALLVKTWLSE 524 >gi|239909140|ref|YP_002955882.1| flagellar M-ring protein [Desulfovibrio magneticus RS-1] gi|239799007|dbj|BAH77996.1| flagellar M-ring protein [Desulfovibrio magneticus RS-1] Length = 547 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 132/563 (23%), Positives = 246/563 (43%), Gaps = 38/563 (6%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++L+Q++ + ++ R ++LA + + F+ F +N P LY + D +R+ Sbjct: 9 FEKLIQYWSNRSAAQR---IMLAGLAASLVAAFVVMLFILNQPDMRVLYTNMPQEDASRV 65 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L + + + DNG+++ VP+ V + R+ +A +G+ G+ELFD++ G T Sbjct: 66 VELLKASKTPYELRDNGATVLVPAEAVYEQRLKVAGEGVMR-GQGIGFELFDEL-KVGQT 123 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 F+Q I RAL+GE+ARTI + ARVH+V+P F + + TASV++ Sbjct: 124 DFVQRINYTRALQGELARTISEFPQVEKARVHLVLPHKSLFIEEQKKATASVVLTLRKGQ 183 Query: 184 VY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQAIQ 238 K + I +LVA +V L +TV D+ G+ L + + G + Sbjct: 184 KLDAKQLQGIVNLVAMSVEGLTPDHITVTDTAGQSLYQPRGDGGLDGLTTTQFEYKNTFE 243 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 +E + + L LG + V AEL+ + IR+ +YDP++ V RS + S+++ Sbjct: 244 SNLENRLEQILTPILGPGRSLAKVNAELDFAQRTIRKELYDPNATVVRSEQKSEESTSGT 303 Query: 299 TSQPESAVTVE-----QNMPHVS--DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + S VT Q +P+ + S + ++++ + +NYEIN + Sbjct: 304 AAVDASGVTTTPRGGGQAVPNTNFRGEGYSGTESTQKSNRENKTTNYEINKEEQNVVTPV 363 Query: 352 YKLERLSIAVVVNKGRLTEVLGRS-ADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 L+R SIAV+V+ ++ + L I +IV+ A G+++ RGD I ++S Sbjct: 364 GDLKRQSIAVIVDGTYEKVEGTKNWKFVPRSAEELERIKQIVARAAGLDAARGDEIQVSS 423 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 +F ++ + ++ R IN L+ + +LV + AL R ++ Sbjct: 424 FEFGAPDGSAEPSLVQTMLEYAQRLGKPFINGLLIFLFLILVVRPVVLALIRPRVTEEEI 483 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 + T +P L + + + + + Sbjct: 484 E------------------TLERLPEGEARLALAEAVESEEAAAMLEP--GRQFELAKHL 523 Query: 531 LLHMIEINEERFAKILRKWARSE 553 L + E N E+ +L+ W + E Sbjct: 524 ALQLFEENMEQSISLLKSWLKQE 546 >gi|303248346|ref|ZP_07334607.1| flagellar M-ring protein FliF [Desulfovibrio fructosovorans JJ] gi|302490254|gb|EFL50168.1| flagellar M-ring protein FliF [Desulfovibrio fructosovorans JJ] Length = 546 Score = 378 bits (972), Expect = e-102, Method: Composition-based stats. Identities = 127/563 (22%), Positives = 236/563 (41%), Gaps = 39/563 (6%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++L+Q++ + T+ R ++L + + F+ +F+N P LY +L D R+ Sbjct: 9 FEKLIQYWSNRTAAQR---ILLGGLAASTVAAFLVMIYFLNQPEMRVLYTRLAPEDAARV 65 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L + + + DNG++I VP+ V + R+ +A +GL G+ELFD++ G T Sbjct: 66 VEQLKASKTPYELRDNGATIMVPAESVYEQRLKIAGEGL-MHGQGVGFELFDQL-KVGQT 123 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 F+Q I RAL+GE+ARTI + ARVH+V+P F + + +ASV++ Sbjct: 124 DFVQRINYTRALQGELARTITEFPQVEKARVHLVLPQKSLFIEEQKQASASVVLTLKRGQ 183 Query: 184 VY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQAIQ 238 K + I +LV+ AV L +T+ D+TG+ L + + + G + Sbjct: 184 KLDAKQLQGIVNLVSMAVEGLTPEHITITDTTGQSLYQPQGDSGLAGMSNSQFEFKNTYE 243 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 +E I + L +G +L+ + IR+ +YDP+ V RS + +++ Sbjct: 244 SNLENRIEQLLTPIVGPGRSIVKANVDLDFSQRTIRKELYDPNVTVVRSEQKNEETTSGT 303 Query: 299 TSQPESAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + S TV + S + + ++ +N+EIN + Sbjct: 304 AAVDASGQTVTPRGGGAAVPNNNFQGSGYSGTESTQKSSRQNSTTNFEINKEEQNVVTPV 363 Query: 352 YKLERLSIAVVVNKGRLTEVLGRS-ADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 L+R SIAV+V+ + + + + L I ++V+ A G++ RGD I ++S Sbjct: 364 GDLKRQSIAVIVDGTYVKDKDKETYTFVPRKAEELERIKQVVARAAGLDPSRGDEIQVSS 423 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 +F + ++ + ++ R +N L+ + +LV + AL R ++ Sbjct: 424 FEFGAPDGSDQPSLVQTMLEYAQRLGKPFLNGLLLFLFLILVVRPVVLALIRPRVTEE-- 481 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 L P A P ++ L + Sbjct: 482 -----EIETLERLPEGEARLALAEPEESEGLGMLEGGKELELAKNLA------------- 523 Query: 531 LLHMIEINEERFAKILRKWARSE 553 L + E N E+ +L+ W + E Sbjct: 524 -LQLFEENMEQSMTLLKAWLKQE 545 >gi|259417522|ref|ZP_05741441.1| flagellar MS-ring protein [Silicibacter sp. TrichCH4B] gi|259346428|gb|EEW58242.1| flagellar MS-ring protein [Silicibacter sp. TrichCH4B] Length = 571 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 156/573 (27%), Positives = 244/573 (42%), Gaps = 35/573 (6%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + Q+ + + R R++ + + + V I F N P LY LE S + Sbjct: 14 VQQIKNVWAGLDT--RKRMMAIGATLAV-IFTFFLMSMVANKPSMQLLYAGLESSSAGDV 70 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 AL ++ +D+ + G SI VPS+ + R+ LA+QGLP++ GYEL D ++ FG T Sbjct: 71 VSALEQSGVDYEVR--GGSIYVPSNKRDELRMTLASQGLPANGGK-GYELLDSLSGFGTT 127 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN-P 182 S M + RA EGE+ARTI + + ARVHI F++ PTASV + + P Sbjct: 128 SQMFDAAYWRAKEGELARTIVANPHVSQARVHIANTGSNPFQRTIE-PTASVSVTPMGTP 186 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242 A AIR LVA+AV L + +V V+D+ G L+ + E + Q + Sbjct: 187 ITPAQANAIRFLVASAVAGLAVDNVAVIDANGALIGSPEAAAAAGAGTDDRSQT----LR 242 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 + + + A +G N + E DT+ IRE + DP S+V S + + S+ Sbjct: 243 ERVLRLVEARVGHGNAVVEISVETVTDTESIREKLVDPQSRVAISTDVEERTDSSQN--Q 300 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 VTV N+P S NT+ E+ NYEI+ ++RL++AV+ Sbjct: 301 AGEVTVASNIPDGDAGN--GEGSRANTNATRERVNYEISETEKEIVRGPGAIKRLTVAVL 358 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 +N G++ + + D L + +++SAA G ++ RGD IT+ SMD L N Sbjct: 359 INGVTTPTADGQATFEPRPDEELDALRELISAAVGFDAERGDVITLKSMD-LPNVEPEGT 417 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482 V S D L ++I V L++ + + + G + Sbjct: 418 AVTSSMFDNLYFDVMSIIQMAALAVVALILGLFVVRPILAGNGASVQALPSPDGMAAGGL 477 Query: 483 P--PISSAVTTGLMPNDNIA--------LDSSNQDIFSHSRNLQSRINSY--------VS 524 P P G M N ++ +DS F L + +S Sbjct: 478 PELPNMGGGDAGFMTNPDLGSNIALDGEIDSGGDGQFQPLGGLPGMGDGLATFGGGGGMS 537 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDR 557 RL MI +E +ILR W E+R Sbjct: 538 DDPVDRLRSMIGERQEETVQILRGWLEENNEER 570 >gi|462109|sp|Q04954|FLIF_CAUCR RecName: Full=Flagellar M-ring protein gi|144247|gb|AAA66325.1| flagellar M-ring protein [Caulobacter crescentus CB15] gi|13422171|gb|AAK22889.1| flagellar M-ring protein [Caulobacter crescentus CB15] Length = 536 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 130/524 (24%), Positives = 240/524 (45%), Gaps = 18/524 (3%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 F+ + LY L++ + + ++ AL +A I + +GS+I VP V AR+ +A + Sbjct: 17 MFMGKEPSELLYSNLDLKEASEVTQALDQAGIKYETKGDGSTIMVPRDKVASARLMVAGK 76 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GL SS S GYE+FD N+ G T F+Q++ R RAL+GE+ RTI+++ G+ + RVH+V+P Sbjct: 77 GLVSSGS-IGYEIFDTNNALGQTDFVQQLNRQRALQGELERTIKAMQGVNSVRVHLVLPK 135 Query: 161 MGSFRKIGARPTASVMI-RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + +P+A+V I AI++LV+++VPN+ V V+D GK L+A Sbjct: 136 RQLFEEDAEQPSAAVTIGVGSREPSSDMVRAIQNLVSSSVPNMKAEKVAVIDQHGKTLSA 195 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 E + ++ I + + LG R V AEL+++ +E +D Sbjct: 196 PSDESLAGKMAQDRKSEVEARIAKTVKDMIEGVLGPGKARVNVTAELDLNRVTTQEERFD 255 Query: 280 PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYE 339 PD +V RS ++ + + + + VT N+P + T + + +NYE Sbjct: 256 PDGQVIRSESTTEASSQENKNDDNAGVTAAANVPGGQGAN-GFQQLGSRTGQNDAVTNYE 314 Query: 340 INTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG--RSADQGKIDSYLAEINKIVSAATG 397 I+ T + ++++++AV ++ A + + +I ++V A G Sbjct: 315 ISKSVTTTVQEPGTIKKIAVAVAIDGVSAPMAADGKPGAYTPRTAQEIQQIEELVKTAVG 374 Query: 398 INSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457 ++ RGD + +T++ F Q + G + + ++ ++ A V ++ + L Sbjct: 375 FDAERGDQVRVTNIKF--PQPEDQGLEEQGLLAGFDKN--DIMRAAELGVLAVVALLILL 430 Query: 458 HALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS---- 512 A+R + N+ G++ PP++ VT + +D S + I Sbjct: 431 FAVRPFIKNLSAPAPGQIALAGPSGGPPVTRLVTLADGTQQQVVVDQSGEPIALAGPPVS 490 Query: 513 ----RNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 R ++I V S R+ +E + + ILR W Sbjct: 491 DIDQRIDIAKIEGQVKASSIKRVSEFVEKHPDESVAILRNWLHE 534 >gi|121608098|ref|YP_995905.1| flagellar M-ring protein FliF [Verminephrobacter eiseniae EF01-2] gi|121552738|gb|ABM56887.1| flagellar M-ring protein FliF [Verminephrobacter eiseniae EF01-2] Length = 562 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 134/566 (23%), Positives = 245/566 (43%), Gaps = 53/566 (9%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 +++ ++L R + + L + + + ++ +AA + P Y L+ L D I LS+ Sbjct: 26 WWQRLSALNRAQRMRLGAGVALLVLAAVAALVLGHQPDYRVLFGNLSDKDGGTIVAQLSQ 85 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 N+ +R+++ G +I VP+ V + R+ LA+QGLP S G+EL + + FG+T F + + Sbjct: 86 MNVPYRLAEGGGAILVPADRVHEVRLRLASQGLPKGSV-VGFELMES-SKFGVTQFQERL 143 Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE 189 R LEGE+ R+IQ++S + +ARVH+ +P+ F + +P+ASV++ + A+ Sbjct: 144 NFRRGLEGELTRSIQALSPVQSARVHLALPEQNGFFREQQKPSASVLVSLYPGRFLERAQ 203 Query: 190 --AIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAIQHEIEMN 244 I HLVAA+VP + V+VLD TGKLL+ + + + L VQ I+ + Sbjct: 204 LAGIVHLVAASVPEMAPSAVSVLDDTGKLLSRSPDGAADAEVNAQQLLHVQRIEQQYTRR 263 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVY----DPDSKVERSIRLSKDAQRSE-- 298 I L +G DN ++ V A+++ + + P+S RS +L + + Sbjct: 264 ILDILEPVVGRDNVKAQVTADVDFTQTESSSEQFRPNQQPESGAVRSQQLLESRSGANKL 323 Query: 299 --------TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 ++QP T N P+ + E T+K+E +NYE++ Sbjct: 324 PTGIPGAVSNQPPVPSTAPINGPNPAPNAGGQQGPDEQTNKRESTTNYELDRTVRVVRGS 383 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 ++RLS AVVVN + + GR+ + + ++ +V + G +S RGD++ + + Sbjct: 384 TGTVKRLSAAVVVNYQSVLD-KGRAVSRALTPEQIGQMTALVRESIGFDSARGDSVNLMN 442 Query: 411 MDF---LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 F + + + + +D+ V L + L + + L R + Sbjct: 443 TPFQLTVTPPEALAWWQRPALIDLAKTLAWPVGALLFAALVLLGLVWPVLRPPRAVAGRQ 502 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 + P PI N+ + L+ + Sbjct: 503 LDALEAETPERPALPAPIIR-----------------NEPLLPTPEQLRLQEA------- 538 Query: 528 DLRLLHMIEINEERFAKILRKWARSE 553 + N A IL+ W E Sbjct: 539 ----RALARENPAAVANILKTWLSGE 560 >gi|295690740|ref|YP_003594433.1| cyclic nucleotide-binding protein [Caulobacter segnis ATCC 21756] gi|295432643|gb|ADG11815.1| cyclic nucleotide-binding protein [Caulobacter segnis ATCC 21756] Length = 532 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 133/524 (25%), Positives = 238/524 (45%), Gaps = 19/524 (3%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 F P+ + LY L++ + + ++ ALS+A I F +GS+I VP V AR+ +A Sbjct: 16 IMFMGKEPN-ELLYSNLDLKEASEVTQALSQAGIKFETKGDGSTIMVPRDKVASARLMVA 74 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 +GL SS S GYE+FD N+ G T F+Q++ R RAL+GE+ RTI+++ G+ + RVH+V+ Sbjct: 75 GKGLVSSGS-IGYEIFDGGNALGQTDFVQQLNRQRALQGELERTIKAMQGVNSVRVHLVL 133 Query: 159 PDMGSFRKIGARPTASVMI-RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 P F + +P+A+V I AI++LV++AVPN+ V V+D GK L Sbjct: 134 PKRQLFEEDSEQPSAAVTIGVGSREPSTDMVHAIQNLVSSAVPNMKAEKVAVIDQHGKTL 193 Query: 218 TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 +A E ++ + I + + LG R V AEL+++ +E Sbjct: 194 SAPSDESLAGKEAQDRKVEAEARIAKTVKDMIEGVLGPGKARVNVTAELDLNRVTTQEER 253 Query: 278 YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSN 337 +DPD +V RS ++ + ++ S T N+P S + E +N Sbjct: 254 FDPDGQVVRSESTNESNSQENKNEDNSGATATANVPGQGAGGFQQLGSRAGAN--ESVTN 311 Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG--RSADQGKIDSYLAEINKIVSAA 395 YEI+ T + ++++++AV ++ A + + +I ++V A Sbjct: 312 YEISKSVKTTVQEPGTIKKVAVAVAIDGVTAPPGKDGKPGAYTPRSAQEIQQIEELVKTA 371 Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455 G ++ RGD + +T++ F Q + G + + ++ ++ A V ++ + Sbjct: 372 VGFDAARGDQVKVTNIKF--PQAEDQGLEKQGLLSGFDKN--DIMRAAELGVLGIVAILI 427 Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS--- 512 L A+R + ++ V S P++ +T + +D S + + Sbjct: 428 LLFAVRPFIK-NLSEPNVVAALPSGSGQPVTRMITLSDGTQQQVVVDESGEPLAIAGPVS 486 Query: 513 ----RNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 R ++I V S R+ +E + E ILR W Sbjct: 487 DIDQRIDIAKIEGQVKASSIKRVSEFVEKHPEESVAILRNWLHE 530 >gi|296135691|ref|YP_003642933.1| flagellar M-ring protein FliF [Thiomonas intermedia K12] gi|295795813|gb|ADG30603.1| flagellar M-ring protein FliF [Thiomonas intermedia K12] Length = 568 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 119/570 (20%), Positives = 227/570 (39%), Gaps = 36/570 (6%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 L + + + L + + I L + + + Y LY L D + Sbjct: 9 LQDPLGAFRQMNMNQRLTWLAGLAALIALVIVTLMWTSRLDYQVLYTNLSERDGGAVIGE 68 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L + NI +RI+ G+ I VPS+ V R+ LAA GLP + G+E+ D G + F+ Sbjct: 69 LQKLNIPYRITGGGAVIEVPSAQVYATRMKLAANGLPK-GAGVGFEVLDHE-PMGTSQFV 126 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 + + RALEG + RTI+S+S + +A VH+ +P F +P+ASV+++ V Sbjct: 127 ERVNYQRALEGSLGRTIESLSAVQSATVHLAIPKPSVFLSEAEKPSASVLLKLYPGRVLS 186 Query: 187 --SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEM 243 I HLV++AV L +V+V+D G LLT+ + + I L I+ + Sbjct: 187 GAQVAGIVHLVSSAVAGLGDKNVSVVDQDGNLLTSGQRADSGIQPDQLMYRNTIEQQYRK 246 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE----- 298 I LA +G + R AV A+++ + +VY + + + + + Sbjct: 247 QIEALLAPLVGNEGVRVAVSADIDFAKTESSSVVYGQGHLLSQQQQSTNSSGGGTLPAGV 306 Query: 299 ----TSQPESAVTVEQNMPHVSDRKVPLPRS---------LENTDKKEEQSNYEINTKSI 345 ++QP VT M S P + SNY+++ Sbjct: 307 PGALSNQPPGGVTAPFVMGTASAPLTPQQLTQITPSLKTLAPTAASSSATSNYDLDKTVS 366 Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 T ++RLS++V+VN + L ++ ++V A G +++RGDT Sbjct: 367 HTQQPVGSVKRLSVSVLVNDQAKGGK-----PVPLSAAQLGQMKQLVENAIGFDAKRGDT 421 Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL---RR 462 ++I +M F Q + + + + ++ L+ L+ A + Sbjct: 422 VSIVNMPFTAAQKEAEKQLPLWRQAWVWDGVRQAVPYVIALILGLMAYRAMRKATSGDVK 481 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 + E+ + P ++G +A + + L + + + Sbjct: 482 AKRRKGKEAAELDETAREETPSDGMQKSSGPGAGAEMAASGVPGALAPDTVQLSNTLETD 541 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARS 552 + +++ + R A+++++W Sbjct: 542 AAIS-----RELVKQDPRRAAQVVKEWLSD 566 >gi|256830792|ref|YP_003159520.1| flagellar M-ring protein FliF [Desulfomicrobium baculatum DSM 4028] gi|256579968|gb|ACU91104.1| flagellar M-ring protein FliF [Desulfomicrobium baculatum DSM 4028] Length = 537 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 142/556 (25%), Positives = 256/556 (46%), Gaps = 35/556 (6%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 L + F+ + R ++L +++ ++ F F++N Y LY +L D Sbjct: 7 NTLAKATDFWTDKSLAQR---ILLGGLLVSLLIAFFVMIFWMNKVDYRVLYSQLYQDDAA 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 + L + I ++I+D+G++I VP MV +ARI LA +G G+ELFD+ NS G Sbjct: 64 SVVSYLQKEKIPYQITDSGATIMVPGDMVYEARIKLAGEG-SLHGQGIGFELFDE-NSIG 121 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 T+F+Q I RAL+GE++RTI +S + +ARVH+V+P+ F + A P+A++M++ Sbjct: 122 QTNFVQGINYQRALQGELSRTISELSEVESARVHLVLPNKSLFVEEQAPPSAAIMLKLKG 181 Query: 182 PSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQA 236 + +AI +LV+ +V + +T+ DS GK+L + + +I G L + Sbjct: 182 GRSLGAQQVQAIVNLVSTSVEGMSAEHITLADSRGKILYEPKTDTDIAGLSSTQLEYQTS 241 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 +Q +E I + L +G + V A+L+ D IR+ ++DP S V RS +++ + Sbjct: 242 MQRSLEQRIEQLLLPIVGPGRVIARVNADLDFDRTTIRKEIFDPKSAVVRSEVKNEEESK 301 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 + T + N +DR + + + + +N++IN + ++R Sbjct: 302 GSANVDGG--TPDPNYQGENDRTASG--TAQESVRTSSTTNFDINKEEQQIIAQVGSIKR 357 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 LS+AV+V+ + + G A + + +I ++ A G + RGD I ++S+ F E Sbjct: 358 LSVAVLVDGKYIQQQDGTYAFEPLNAEQMEQIRQLSQRAVGFDDARGDAIEVSSISFGEP 417 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476 G Q +D+ SR+F + L+ + LL + K V Sbjct: 418 ----VGAEQAPLLDVASRYFQLLGKPLLNTLIILLFLLFVARPVVLALIRPKVDKPTVQT 473 Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536 L A+T GL D A+D+ + N+ Q ++E Sbjct: 474 ADQLGAAQELMALTEGLNEEDMAAVDAVKRIE-----------NAKHLAQ------QLVE 516 Query: 537 INEERFAKILRKWARS 552 N ++ I+R+W Sbjct: 517 QNMDQAVMIMRQWMTQ 532 >gi|77918796|ref|YP_356611.1| flagellar M-ring protein FliF [Pelobacter carbinolicus DSM 2380] gi|77544879|gb|ABA88441.1| flagellar M-ring protein FliF [Pelobacter carbinolicus DSM 2380] Length = 519 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 134/553 (24%), Positives = 233/553 (42%), Gaps = 50/553 (9%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 ++ R R L L +V+L ++ F A F N Y L+ L+ +D + L Sbjct: 8 KNLIETIRQWPRKRQLSLLAVVLACVVFFAAIIFQANKADYQMLFGNLDSADAAAVVDRL 67 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 E + +R+ G +I +P+ V + R+ +A GLP G+E+FDK SFG+T F Q Sbjct: 68 KEQKVPYRLEHGGRAIFIPADKVYEIRLAMAGSGLPRGGG-VGFEIFDK-QSFGMTDFAQ 125 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187 +I +RAL+GE++RTI S++ + AARVH+ +P+ FR + +ASV+++ + Sbjct: 126 KINYLRALQGELSRTIASLAPVEAARVHLALPEKRLFRDQQQKASASVIVKLATGQSLRE 185 Query: 188 AE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS---LSIVQAIQHEIE 242 + I +LVA +V LD+ V V+D G++L+ G + L Q ++ +E Sbjct: 186 TQILGIVNLVAGSVDGLDVDQVAVIDDNGRVLSQTADHSGTGGTAPDMLEYQQNLEQRLE 245 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 + L LG+ N V A ++ ++ E YDP+ RS + S + + + Sbjct: 246 LRAQALLDRALGMGNSMVQVTAAIDYTQRERMEESYDPNQTAVRSEQSSSE--KGGVANA 303 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 V+ N+ + +P T + E NYEI+ ++ LS+AV+ Sbjct: 304 GGVPGVQTNIKNEKAGNSFIP-----TSRSNETINYEISKVVSKQVDSVGSIKNLSVAVL 358 Query: 363 VNKGRL---TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 V + + + Q + LA I K++S A G+N RGD I + S F E Sbjct: 359 VADRPVDNQGDTDKAPSYQPRDPKELAAIEKMISRALGLNPDRGDQIAVISRPF-ETAFN 417 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + V+ S + + + AL+ L L F + L ++ D G + Sbjct: 418 SEPLVKSSPWSRIYQMVPMIKYALLALTAGLFY-FFVIRPLLQILRGD--------GPMV 468 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 + + D A + S + Q + Sbjct: 469 EHYKTVEQLESEMAGLPDGSAAQEPPLSLPSGQPSEQ--------------------KDP 508 Query: 540 ERFAKILRKWARS 552 A+I++ W + Sbjct: 509 ---AQIIKAWLKD 518 >gi|149377888|ref|ZP_01895617.1| flagellar M-ring protein FliF [Marinobacter algicola DG893] gi|149357830|gb|EDM46323.1| flagellar M-ring protein FliF [Marinobacter algicola DG893] Length = 565 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 117/561 (20%), Positives = 236/561 (42%), Gaps = 45/561 (8%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 L R + L + + L +A + P+Y + + + ++ L Sbjct: 27 DLIFGFNRLNLLRQVGLMVGLAASVALGVAVVLWAQEPNYQPVVGDMSGYNPQDVTTILD 86 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 +ID+R+ ++ VPS V AR+ LAA+G+ + GYEL D+ G + FM+ Sbjct: 87 ANSIDYRMDPRTGALLVPSDEVYNARLKLAAEGV-TDEQTMGYELLDQDRGLGTSQFMET 145 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA 188 I+ R LEGE+ARTI S+ + AARVH+ +P+ F + PTASV + I + Sbjct: 146 ISFRRGLEGELARTIGSMRTVRAARVHLAIPERSVFVRDARTPTASVFLEVIAGRRLEQE 205 Query: 189 E--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMN 244 + +I +LVA ++P + +VTV+D +G LLT + + + ++ + Sbjct: 206 QIASIVNLVAGSIPEMSKDNVTVVDQSGNLLTGREDGGDSQQIEDQYDYTSRVEDRLARR 265 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 + + +G FR+ V A+L+ + + E +++P+ + RS R + R Sbjct: 266 VASMVRPVVGDGRFRAEVTADLDFSSVEQAEELFNPEQQAVRSERQMSE--RRAGGGASG 323 Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTD--------KKEEQSNYEINTKSIATTHDNYKLER 356 N P + + + ++E NYE++ + +++R Sbjct: 324 IPGALSNQPPAQPTVPEQATADDEGNVQAPPVNVREESTRNYEMDRTVSYIRQELGRIKR 383 Query: 357 LSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 LS+A+ V+ ++ + G + + + L + +V A G ++ RGD++T+ + F Sbjct: 384 LSVALAVDDMKVVDPQTGEVSYEPWPEQELQRLTMLVRDAVGYSAARGDSVTVMNTAFAA 443 Query: 416 NQLFN----SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 + + Q F D++ + A ++ ++ L L+ L +++ Sbjct: 444 EEQIEFEAPAFWEQPWFWDLMKQVLAGLVILVLVLGLL-------RPTLKSLSGGGRSER 496 Query: 472 --GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 G L A+ + D++ L + + ++N+ Sbjct: 497 RGDSDDGYGGLDGIEGGDALREAMHSQDDLLLPGAT-------DSYDRQLNA-------- 541 Query: 530 RLLHMIEINEERFAKILRKWA 550 L +I + R ++++R+W Sbjct: 542 -LKGLIAEDPARVSQVMRQWV 561 >gi|307944136|ref|ZP_07659477.1| flagellar M-ring protein FliF [Roseibium sp. TrichSKD4] gi|307772482|gb|EFO31702.1| flagellar M-ring protein FliF [Roseibium sp. TrichSKD4] Length = 537 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 148/552 (26%), Positives = 254/552 (46%), Gaps = 20/552 (3%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++ L++F K +LG TR+ + +V + + +F V +P LY L + D I Sbjct: 1 MNGLIEFIK---TLGPTRVAAMGAVAAMLVGIFAFIILRVTAPQMTTLYSDLTLEDSGAI 57 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L + + + NG+++ VP V + R+ LA GLP+ S GYE+FD+ ++ G T Sbjct: 58 VSRLEGMGVPYELGRNGATVMVPRERVARLRMQLAEDGLPTGGS-IGYEIFDRSDTLGAT 116 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 SF+Q I +RALEGE+AR+I +I I +ARVH+V+P+ F++ PT S+++ Sbjct: 117 SFVQNINHLRALEGELARSIAAIDRIQSARVHLVIPERQLFQRDQRAPTGSIVLNVRGTL 176 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSL-SIVQAIQHE 240 A++HLVA AV L V+V+D TG+LL + E I+G SL V AI+ Sbjct: 177 GQGEIRAVQHLVATAVEGLRPESVSVVDETGRLLASGAESDEEGIIGNSLQERVFAIESR 236 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 ++ + + L++ +G R V A+++ + +DP+ +V RS + ++A S Sbjct: 237 LKGQVEEILSSVVGPGRSRVRVAADVDFNRTTETIETFDPEGQVVRSTQTKEEASSSTER 296 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 E VTV +P+ D S E T EE NYEI+ + + +++RLS+A Sbjct: 297 TNE--VTVGNELPNGGDNNG-GEGSNEETTATEEIVNYEISRSTKTEIVEAGRVQRLSVA 353 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 V+V+ G + L I +V +A G + RGD + + ++ F + Sbjct: 354 VLVDGTYGPNADGEVVYTPRTQETLDRIALLVRSAVGFDEGRGDIVEVVNLQFAAPPQGD 413 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 F ++ L+ LL+ F+ LRR+ ++ + E L Sbjct: 414 LTEEPGLFEFTKEDIMRFAELGVLLLISLLLLLFVVRPLLRRIVTPEEPQPQE------L 467 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 P + +P++ D+ D +++ S ++ MIE + Sbjct: 468 LIGPDGQLIAESEVPSE----DAEEDDEMRIEWLEEAKAAGAAQATSISKVGEMIEEHPT 523 Query: 541 RFAKILRKWARS 552 I+R W Sbjct: 524 EAVTIVRGWLDE 535 >gi|329849956|ref|ZP_08264802.1| flagellar M-ring protein FliF [Asticcacaulis biprosthecum C19] gi|328841867|gb|EGF91437.1| flagellar M-ring protein FliF [Asticcacaulis biprosthecum C19] Length = 554 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 143/553 (25%), Positives = 238/553 (43%), Gaps = 11/553 (1%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 FF G R+ + + +A +++ LY L++ + + I+ ALS Sbjct: 3 SFFNGLQRFGIGRLTAILGAAAGIAAVILAIVLNISAQPQSLLYSNLDLKEASEITTALS 62 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 + I + +GS+I V V +AR+ LA++GLP+ +S GYE+FD + G T +Q Sbjct: 63 QGGIKYEAKGDGSTIMVNRDQVAEARMMLASKGLPTQAS-VGYEIFDDAPALGQTEAVQN 121 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTA-SVMIRAINPSVYKS 187 I RALEGE+ARTI+++ GI +ARVH+VMP F +PTA V+ + +S Sbjct: 122 INNQRALEGELARTIRTLRGISSARVHLVMPKRELFEDAAGQPTASVVLGLSGGSLSSES 181 Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIVQAIQHEIEMNIN 246 AIR++VA AVPNL +VT++D LL A + +G + I+ + + Sbjct: 182 VAAIRNVVATAVPNLKADNVTIVDDRNHLLAAGGDSDSAMGVAGSARKSEIEDSVRKRVM 241 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306 + + +G R V AE++ ++ Y+PD +V RS + + + Sbjct: 242 EIVEGVVGPGAARVMVTAEIDQTATTREQVEYNPDGQVVRSTSTNSGTETTADPNSAGQT 301 Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 T N+P + L S ++ + E +N+EI+T ++++L++AVVV+ Sbjct: 302 TATANIPGTQ-QAPNLSTSGNSSQQDSEVTNFEISTTKTTEVKAPGEIKKLAVAVVVDGV 360 Query: 367 RLTEVLGR--SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424 G+ A + + I ++V AA G + RGD + ++++ F Sbjct: 361 ETPSADGKAPPAYAPRSAEDMQRIQELVQAAVGYDQTRGDQVRVSNIRFSRGDFAAGTDA 420 Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG-----EVGGKSI 479 + D I V + LLV FL L + N A G GG Sbjct: 421 KPPLFDFDKNDIMRAIEVAVLFIVALLVIFLIARPLLKFINGGGAAGGNFLGTANGGSQA 480 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 + + DNIA R +RI V S ++ ++ + Sbjct: 481 ALAGAAVTGPSISYQAADNIAATGLVPTQEQEQRIDIARIEGQVKASSVKKVSEFVDRHP 540 Query: 540 ERFAKILRKWARS 552 E ILR W Sbjct: 541 EESVSILRSWLHD 553 >gi|269836582|ref|YP_003318810.1| flagellar M-ring protein FliF [Sphaerobacter thermophilus DSM 20745] gi|269785845|gb|ACZ37988.1| flagellar M-ring protein FliF [Sphaerobacter thermophilus DSM 20745] Length = 535 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 131/555 (23%), Positives = 238/555 (42%), Gaps = 32/555 (5%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 Q+ + + L + + + +V++ +M Y + L D I Sbjct: 5 QIERIRNAWNRLSMNQRVAVIAVVITAVMALGLLIATRPPQRYGIAFSGLSSEDAAAIVE 64 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L I + +S +G +I VP+ V R+ A+QGLP S+ G+ELFDK +S GLT F Sbjct: 65 NLRAQGIPYELSSDGGTIRVPADQVAAVRLDAASQGLPRGGSD-GFELFDK-SSLGLTDF 122 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 Q + RA+EGE+ RTI I + AARVHIV+P+ F + TA+V+++ + Sbjct: 123 TQRVNYQRAIEGELERTIAKIDAVEAARVHIVIPEESLFIEEQQPTTAAVVLKLKSGRQL 182 Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGK-LLTANEMERNILG--KSLSIVQAIQHE 240 I HLV+ AVPNL ++TV+D+TG + + + G + + QA + Sbjct: 183 TEAQIRGITHLVSGAVPNLQPENLTVIDNTGNPIWSGPDGGSQFAGLDERFRLQQAYEQN 242 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSIRLSKDAQRSE 298 +E + + G + V A LN D + + +Y PD RS + + Sbjct: 243 LERQLQALVNPIAGPGHAVVRVSATLNWDERSSQSEIYSPDGLQPQVRSQQEREQRTSGT 302 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 ++ V++N+ + + P S + +E +NYE++ + +++RLS Sbjct: 303 VTETGGVPGVDENV--QTFPETPGAGSQSESSSREVTTNYELSRRIEEVVQAPGQVQRLS 360 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 +AV+++ ++ + EI ++SAA G+ +RGDTIT+T++ F + + Sbjct: 361 VAVMLDGSQVDPAVA------------QEIQDVISAAAGLVPQRGDTITVTAVPF--SDV 406 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 N + IL + T + L + L+ + L + GE+ Sbjct: 407 GNRELIPDGGTPILE-YALTALKVLGLIAIPLVALYFARRVLVKPE-----DAGELTPAL 460 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 P + + I + + + QS + L+++ + + Sbjct: 461 ATVGGPAVTEPPMPALATQRITISETPPQLEDEDP-SQSTDRGLPQLPAHLQVIELANTD 519 Query: 539 EERFAKILRKWARSE 553 + A++LR W E Sbjct: 520 PAQVAQLLRAWMSEE 534 >gi|117923585|ref|YP_864202.1| flagellar M-ring protein FliF [Magnetococcus sp. MC-1] gi|117607341|gb|ABK42796.1| flagellar M-ring protein FliF [Magnetococcus sp. MC-1] Length = 551 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 133/560 (23%), Positives = 228/560 (40%), Gaps = 42/560 (7%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 L F S GR ++I A + + + A +F P LY L + RI Sbjct: 19 LGGLFGSLPLTGRNGVIIAA---MASVFILAAIIWFATRPSMKVLYSGLPDLESARIVEQ 75 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L + + + + G++I +P V R+ +A GLP S+ G+E+FD + G+T F+ Sbjct: 76 LGKLGVPYELGSGGTTIRIPEDKVYDVRLEMAKAGLPKSTDGVGFEIFDNQSLMGMTDFV 135 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 Q + RAL+GE+AR+++SI+ + ARVH+V+P F TASV++ + Sbjct: 136 QRMNYQRALQGELARSVESIAAVEKARVHLVLPKKSMFAAEERTATASVVMELTHALNKT 195 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME----RNILGKSLSIVQAIQHEIE 242 + I H+VA+AV L VT+LD G L+ + E R +L++ + +IE Sbjct: 196 QIDGITHMVASAVEGLSQDQVTLLDQKGNLIAGGKTEDLDGRMPTDDALALQSMKEKKIE 255 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 + L LG D + AEL++D +Q +E YDPD +V S ++ R Sbjct: 256 ERVQSLLDRVLGPDKSIIRITAELDLDKKQRQEESYDPDGQVPLSTNTVTESSRGMFGT- 314 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 V N P+ S + D + EQ N+ + K + RLS+AV+ Sbjct: 315 GGVPGVIPNDPN-QTAVAGGTGSQQTRDVEREQVNFLVPKKVTTVQEAVGDIRRLSVAVM 373 Query: 363 VNKGRLT--------EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 ++ + + + + ++ +I+ G +++RGD+I +T+ F Sbjct: 374 IDGTYEAVKDKDGNIDPEKPAVYTPRSTEEMEQLKRIIMQTVGFDAKRGDSIEVTNTAF- 432 Query: 415 ENQLFNSGTVQVSFMDILSRHF-ATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 LSR F + + L+ F + L I + ++ + Sbjct: 433 ----EPLPPPLDVKSPWLSREFQLEMAKYGAIALLAFLLVFFVMRPLVTKLLIPEEEQDD 488 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 ++ A G +P D S I + +S Sbjct: 489 RLPGTVADLERQLLAEGVGTIPVD-------------------SPIRMKIPDRSLQLAQQ 529 Query: 534 MIEINEERFAKILRKWARSE 553 MI N E +I+R W + Sbjct: 530 MIADNLEEAREIIRSWMAQD 549 >gi|85058031|ref|YP_453733.1| flagellar basal-body M-ring protein FliF [Sodalis glossinidius str. 'morsitans'] gi|84778551|dbj|BAE73328.1| flagellar basal-body M-ring protein FliF [Sodalis glossinidius str. 'morsitans'] Length = 568 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 130/555 (23%), Positives = 213/555 (38%), Gaps = 62/555 (11%) Query: 38 AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97 + +P Y LY + D + L+ NI +R + N +I VPS V + R+ L Sbjct: 44 VLLLWARTPDYRILYSNISDQDGGAVVAELTTMNIPYRFAGNSDAIMVPSDRVHETRLLL 103 Query: 98 AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 A +GLP + G+EL D+ FG++ F ++I RALEGEIARTI++++ + +ARVHI Sbjct: 104 AQKGLPKGGA-LGFELLDRE-KFGMSQFSEQINYQRALEGEIARTIKTLNPVKSARVHIA 161 Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 MP F + TASV + +AI LV+ VP+L G++T++DS G+ Sbjct: 162 MPKPSLFVREHKPATASVTLTLYPGRALDTGQIQAITWLVSGTVPDLPAGNITMVDSQGQ 221 Query: 216 LLTA-NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LL E ++ L+ + ++ + + I+ LA +G N R+ V A+L+ + Sbjct: 222 LLAQPGNNELDLSTTQLAYTREVEGDFQRRISAILAPVIGAANVRAEVTAQLDFTAVEQT 281 Query: 275 EIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMP----------HVSDRKVP 321 + P+ + E S+ S+ P N P + Sbjct: 282 AEQHKPNGRPEEMAIRSQQLSASDQIGIQAPGGVPGALSNQPTPPATASIESPANAAAGK 341 Query: 322 LPRS---------------LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 P S + + E+ NYE++ + ++RLS AVVVN Sbjct: 342 KPASKDSVPPPAAAAPIVQPPRSSQNEKTINYEVDRTLTHSRFRPGVIKRLSGAVVVNDR 401 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 + + ++ +V A G +S RGDT+ I + F+ NQ + Sbjct: 402 EDSNGN----RVHLTPQEMQDVTALVREAMGFSSERGDTLNIVNTRFVANQDIM---PPL 454 Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486 F + L + + LL LR L + E + P Sbjct: 455 PFWQDPGLQSIAF-SLLRYALVALLFWLAWRKGLRPLWQRQQEIERERIRAQYEASQPR- 512 Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546 D S + S +L + + A+IL Sbjct: 513 ---------------DEPRPISRSELEKETREKARQAMEDSIRQLRDVAAARPQMVARIL 557 Query: 547 RKWARSEIEDRYTQH 561 R+W R Q Sbjct: 558 RQWI-----TREQQP 567 >gi|257095338|ref|YP_003168979.1| flagellar MS-ring protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047862|gb|ACV37050.1| flagellar M-ring protein FliF [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 578 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 131/586 (22%), Positives = 247/586 (42%), Gaps = 64/586 (10%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + L + ++ L + ++L + + L +AA + + L+ + D I Sbjct: 16 NPLDRAREALARLTNRQKVLLIVSVAAVVTLLIAAATLLRQGEFKVLFSNIGERDGGAII 75 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 AL + N+ ++ S++GS+I V S V R+ LAAQGLP + G+EL + FG++ Sbjct: 76 AALEQMNVPYKFSESGSAILVHDSRVHDVRLRLAAQGLPRGGA-VGFELMEA-QKFGVSQ 133 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 F +++ R LEGE++RTIQSI+ + AARVH+ +P F + +P+ASV++ Sbjct: 134 FAEQVNYQRGLEGELSRTIQSIAAVQAARVHLAIPKPSVFMREELKPSASVLLNLYPGRS 193 Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKSLSIVQAIQH 239 + I++LVAA+VP L VT+LD +G LL+ + E + + +Q ++ Sbjct: 194 LEPRQIAGIQNLVAASVPQLAPTSVTLLDQSGALLSQMKSKLLEAGLDPTQVKYIQEVEA 253 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVE----RSIRLSKDAQ 295 + + LA +G N R + A+++ + + P++ RS + S+ A Sbjct: 254 SVIKRVEDILAPIVGPGNARVQIAADIDFSQSEQTAETHRPNATPPEISIRSQQSSETAS 313 Query: 296 RSE---------TSQPESAVTVEQNMPHVSDRKVPLPRSLEN------------------ 328 S ++QP T P V P + Sbjct: 314 TSPAAQGVPGALSNQPPVPATAPLTQPPVPGAGGAAPATPPVPGQINVAGVQAPVASVGP 373 Query: 329 --TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLA 386 + K NYE++ ++RLS AVVVN+ + G++ ++ D+ + Sbjct: 374 PISTSKNSTVNYEVDKTIRHVRQAVGTIKRLSAAVVVNQRKEVAKDGKAVNKPLPDAEVK 433 Query: 387 EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFL 446 +I+ +V A G N RGDTI++ + F + + + D + + + + + Sbjct: 434 QISDLVKEAMGFNKERGDTISVANAPFT---VIDKDEGLPPWRDPET--VSLTKDLVKYG 488 Query: 447 VGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQ 506 V ++ +L L +R L K TT I + + + Sbjct: 489 VIAAIIAYLLLGVVRPLLKTMLEKPA-----------------TTESGVGGRIDVVAGEE 531 Query: 507 DIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 + NL + + + R + + + + A I+++W + Sbjct: 532 GEEEATENLPTAAELLEKRIAAAR--ALAQQDPQLVANIIKEWTGA 575 >gi|160896087|ref|YP_001561669.1| flagellar M-ring protein FliF [Delftia acidovorans SPH-1] gi|160361671|gb|ABX33284.1| flagellar M-ring protein FliF [Delftia acidovorans SPH-1] Length = 566 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 123/573 (21%), Positives = 240/573 (41%), Gaps = 61/573 (10%) Query: 12 KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71 + T++ R L ++ ++ ++ AA F P Y L+ L D I LS+ N Sbjct: 22 QRWTAMDRGARLRWGAIAVLLVVALGAAAMFYRQPDYKVLFSNLSDKDGGAIVAQLSQMN 81 Query: 72 IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131 + +R ++ G +I +PS V R+ LA QGLP S +G+EL + + FG+T F + + Sbjct: 82 VPYRYTEGGGAILIPSDRVHDVRLKLATQGLPKGSV-TGFELME-NSKFGITQFQERLNF 139 Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAE 189 R LEGE+ R+IQ+++ + +ARVH+ +P+ F + +P+ASV++ V Sbjct: 140 QRGLEGELTRSIQALAAVQSARVHLALPNQNGFFREQQKPSASVLLSLYPGRVLDRTQIA 199 Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNINK 247 I HLVA++VP + V++LD +GKLL+ + + + L+ Q I+ + I + Sbjct: 200 GIVHLVASSVPEMAPTAVSILDDSGKLLSQSPDGNANAVDMQQLNYTQQIEQQYVRRILE 259 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303 L +G +N ++ V AE++ + + P+ V RS ++ + + QP Sbjct: 260 ILEPVVGKNNVKAQVSAEMDFSQTESTSEQHRPNQSSDAGVVRSQQVVESTGEQKPPQPT 319 Query: 304 SAVTVEQNMPHVS-----------DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 N P + + + + K+E +NYE++ T Sbjct: 320 GIPGATSNQPPQNASAPVNGANPAPQAADGQNAARSASKRESITNYEVDKTVRHTRGSTG 379 Query: 353 KLERLSIAVVVN------------KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400 ++RL+ AVV+N +A +G + A++ +V G ++ Sbjct: 380 SIKRLTAAVVINAPLVAAPAPAAAGAATDAATVAAAARGLTAAQQAQLLTLVRETVGYSA 439 Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460 RGD++ + S F+++++ + ++L + + + L G +L+ L L Sbjct: 440 ERGDSVNLVSTPFVQDEVP-ADVPLWRQPEVLDMARSLGVPIGLALFGAILLLGLVRPML 498 Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520 + + + L P +++ + + L+ + Sbjct: 499 KGRKTVAVGGQLNAIEGEQLDRPALAAPAVDLSPTQEQVRLEQA---------------- 542 Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + + N A I++ W E Sbjct: 543 -----------RQLAKQNPIAVANIVKTWINGE 564 >gi|294339862|emb|CAZ88225.1| putative Flagellar M-ring protein FliF [Thiomonas sp. 3As] Length = 568 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 118/570 (20%), Positives = 225/570 (39%), Gaps = 36/570 (6%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 L + + + + + I L + + + Y LY L D + Sbjct: 9 LQDPLGAFRQMNMNQRFTWLAGLAALIALVIVTLMWTSRLDYQVLYTNLSERDGGAVIGE 68 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L + NI +RI+ G+ I VPS+ V R+ LAA GLP + G+E+ D G + F+ Sbjct: 69 LQKLNIPYRITGGGAVIEVPSAQVYATRMKLAANGLPK-GAGVGFEVLDHE-PMGTSQFV 126 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 + + RALEG + RTI+S+S + +A VH+ +P F +P+ASV+++ V Sbjct: 127 ERVNYQRALEGSLGRTIESLSAVQSATVHLAIPKPSVFLSEAEKPSASVLLKLYPGRVLS 186 Query: 187 --SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEM 243 I HLV++AV L +V+V+D G LLT+ + + I L I+ + Sbjct: 187 GAQVAGIVHLVSSAVAGLGDKNVSVVDQDGNLLTSGQRADSGIQPDQLMYRNTIEQQYRK 246 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE----- 298 I LA +G + R AV A+++ + +VY + + + + + Sbjct: 247 QIEALLAPLVGNEGVRVAVSADIDFAKTESSSVVYGQGHLLSQQQQSTNSSGGGTLPAGV 306 Query: 299 ----TSQPESAVTVEQNMPHVSDRKVPLPRS---------LENTDKKEEQSNYEINTKSI 345 ++QP VT M S P + SNY+++ Sbjct: 307 PGALSNQPPGGVTAPFVMGTASAPLTPQQLTQITPSLKTLAPTAASSSATSNYDLDKTVS 366 Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 T ++RLS++V+VN + L ++ ++V A G +++RGDT Sbjct: 367 HTQQPVGSVKRLSVSVLVNDQAKGGK-----PVPLNPAQLGQMKQLVENAIGFDAKRGDT 421 Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL---RR 462 ++I +M F Q + + + ++ L+ L+ A + Sbjct: 422 VSIVNMPFTAAQKEAEKQLPLWRQAWVWDGVRQAAPYVIALILGLMAYRAMRKAASGDVK 481 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 + E + P + ++G +A + + L + + + Sbjct: 482 AKRRKGKEAAEDDETAREETPSDGTQKSSGPGAGAEMAAGGMPGSLAPDTVQLSNTLETD 541 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARS 552 + +++ + R A+++++W Sbjct: 542 AAIS-----RELVKQDPRRAAQVVKEWLSD 566 >gi|225850271|ref|YP_002730505.1| flagellar M-ring protein FliF [Persephonella marina EX-H1] gi|225645356|gb|ACO03542.1| flagellar M-ring protein FliF [Persephonella marina EX-H1] Length = 529 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 125/560 (22%), Positives = 242/560 (43%), Gaps = 47/560 (8%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 IL + +F K + R LI+A ++L+ + +A + V Y LY L D Sbjct: 6 ILKKTSEFIKKNLN-PRNIALIIAGLLLITFLGIIAFKT-VTKEEYGVLYTHLNPDDAGS 63 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L E NI +++ +GS I VP + V + R+ LAA+GLP S G+E+F++ G+ Sbjct: 64 ILSVLQEENIPYKVEGDGSIILVPRNKVHEIRLKLAAKGLP-SGKTVGFEIFEE-PKMGI 121 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T F + + +RALEGE++RTI+ + + A+V+I +P F + P AS++++ Sbjct: 122 TQFQENVNYLRALEGELSRTIRQLDPVRDAKVNIALPKESIFVREEDEPKASIILKLWPG 181 Query: 183 --SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAI 237 + +A+ LV+ AVP L +VTV+D+ G++L+ + + K++ I + + Sbjct: 182 KDLTKEQVKAVVFLVSHAVPKLKPENVTVVDNRGRVLSDILEEDTVTAVSDKNVEIKRKL 241 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + +IE N+ L+ LG E+ Q ++ +YDPD S R ++ ++ Sbjct: 242 ERQIEKNVQTMLSRALGEGKVVVRATVEIETGKLQQQDEIYDPDRTAVVSERKIQEKEKE 301 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 Q N+P V D + ++ ++K+ NY + + T + ++++ Sbjct: 302 FKQQEALPPGTPTNVPPVID-ETGQGSIIKQKERKDTTKNYNVTKSLVNTQKPIFNIKKI 360 Query: 358 SIAVVVNKGRLTEVLGRSADQ----GKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 S+ V+++ ++ + + L +V +A G + +RGD +T+ S+ F Sbjct: 361 SVGVLIDGKYEKVKDEEGNEKYRFIPRSEEELKVYESLVKSAIGYDPKRGDQVTVVSVPF 420 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 E + + + DI+ ++ V V +++ K E Sbjct: 421 -EAKPEVAVAEERKIEDIILLVAIGILGLAVLAVAAIILV---------KVLKGKKKVPE 470 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 I + A+ M + + +L+ Sbjct: 471 AVPPGISPEAAAAYAIHEKEMEEFQL-----------------------EREPIYRKLVD 507 Query: 534 MIEINEERFAKILRKWARSE 553 + + N E A+++ KW + E Sbjct: 508 LAQENPELIAELITKWMKEE 527 >gi|152990373|ref|YP_001356095.1| flagellar M-ring protein FliF [Nitratiruptor sp. SB155-2] gi|151422234|dbj|BAF69738.1| flagellar M-ring protein FliF [Nitratiruptor sp. SB155-2] Length = 542 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 138/563 (24%), Positives = 253/563 (44%), Gaps = 36/563 (6%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 I ++L Q F++ + +T L L L+ ++ + R Y LY L D Sbjct: 8 IKEKLKQAFEN-KNFIKTLFLALGIGALIVLLSALLIRDISAE-KYGVLYANLTADDAGN 65 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L E I +++ NG I VP + R+ LAA+GLP S N G+E+FD+ G+ Sbjct: 66 ILTVLQEEKIPYKVEGNGKIILVPKDKIYDVRLKLAAKGLPR-SQNVGFEIFDE-PKMGI 123 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T F + I +RALEGE+ARTI+ I + ARV+I +P F + ASV+I Sbjct: 124 THFQENINYIRALEGELARTIKKIDAVQDARVNIALPKDSIFAREEDEAKASVIISLHPG 183 Query: 183 SVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQ 238 + +AI LV+ AVP L +VTV+D++G++L+ E E + + + + + Sbjct: 184 MSLTKEQVKAIVFLVSHAVPKLKSQNVTVVDNSGRVLSDMLEENEEKEVHDVVDLKRKFR 243 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 +IE ++ LA LG E+ R+ +YDPD S R ++ +S Sbjct: 244 RDIEKSVESMLARALGAQKVVVRANVEIETAKIDKRDEIYDPDKTAVVSERKIQEKSKSI 303 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 QP + N+P + P L++ KK+ +NY++ I T + +K+++++ Sbjct: 304 PQQPIGSPGTPTNVP-ATINTGPNGTVLQDKSKKDITTNYDVTKSLIVTKQNVFKIKKIT 362 Query: 359 IAVVVNKGRLTEVLGRSADQ----GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 + V+++ + ++ Q + + L ++ +A G + +RGD +T+ S+ F Sbjct: 363 VGVLIDGKYIKKMDKNGTMQVEFVPRSEQELKSFENLIKSAIGYDPKRGDQVTVVSVPFE 422 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 L V+ F R+ AL+ ++ LL+ F+ + K+ + Sbjct: 423 NQALAAPMQVKRGF----ERYILYAAFALLAIMALLLIWFI----------LKQRKQKVL 468 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 + + + + GL + AL +++ + S + ++LH+ Sbjct: 469 LEQELATATQPGTTTPQGLTESSRKALHELEEEMSALSLQDE---------PIYQKILHI 519 Query: 535 IEINEERFAKILRKWARSEIEDR 557 + N + A ++ KW + E + Sbjct: 520 AQENPDLIATLISKWIKEEGSGK 542 >gi|332305659|ref|YP_004433510.1| flagellar M-ring protein FliF [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172988|gb|AEE22242.1| flagellar M-ring protein FliF [Glaciecola agarilytica 4H-3-7+YE-5] Length = 568 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 106/560 (18%), Positives = 223/560 (39%), Gaps = 27/560 (4%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 +Q F S S R L+L +++ + + + + P Y L K++ ++ Sbjct: 26 EQKSGFMDSLGSTDMVRQLMLVVALVICVAIAVFIMIWAQEPDYRPL-AKMQTQELIEAL 84 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 + ID+R+ G+++ V S ++ +A QGL S + G ++ + FG++ Sbjct: 85 DYFDQNQIDYRLE--GNTVYVSSDQYQDIKLGMARQGL-SQGVSEGTDIIMQDMGFGVSQ 141 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 ++++ A E ++ART++ +S + A+V + +P F + + +A+V+I A ++ Sbjct: 142 RVEKVRLKHAREQQLARTLEEMSAVTRAKVLLALPKENVFARREKKASATVVITARRGAI 201 Query: 185 --YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240 + +I +VA+AV L+ VTV DS G+LL + + K + + + E Sbjct: 202 MGSEEVSSIVDIVASAVQGLEPERVTVTDSNGRLLNSGSQDSEAARSKKEFEMERKRESE 261 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I+ L LG+ N+ + ++ + + Y+PD RS +D S Sbjct: 262 YLQKIDSILIPVLGLGNYTAQADVTMDFTAVEQTKRSYNPDLPAVRSEMTVEDN--SVGG 319 Query: 301 QPESAVTVEQNMPHVSDR------KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 N P + ++ + KEE NYE++T T + Sbjct: 320 VLGGIPGALTNQPPLDSNIPEEAIASNTQTTMPGRNHKEETRNYELDTTISHTKQQTGVI 379 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 RLS++V ++ T G + + + L +I +++ G + RGD++ + S+ F Sbjct: 380 RRLSVSVALDHIATTGEDGTTTFSPRSQAELLDIRRLLQGGLGFDVTRGDSLEVVSIPFS 439 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 V + VI LV +V L V L L ++ + K E Sbjct: 440 REGEVALEEVPIWEDPKFMPILKLVIGGLVIIVLLLAVVRPMLRKL--IYPEETTSKDEF 497 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 L + ++ + + + + + + + + + + Sbjct: 498 DADEGLDLGDETISMLSQEFDDSQVGFAADGSFMLPDLHKDEDVLKA---------VRAL 548 Query: 535 IEINEERFAKILRKWARSEI 554 + E +++++ W + Sbjct: 549 VANEPELSSQVVKNWLLQDE 568 >gi|332531123|ref|ZP_08407037.1| flagellar M-ring protein FliF [Hylemonella gracilis ATCC 19624] gi|332039408|gb|EGI75820.1| flagellar M-ring protein FliF [Hylemonella gracilis ATCC 19624] Length = 570 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 110/548 (20%), Positives = 210/548 (38%), Gaps = 70/548 (12%) Query: 45 SPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPS 104 + L+ L D I L++ + ++ ++ G +I VP+ V R+ LA+QGLP Sbjct: 44 KTDWRVLFSGLSDKDGGAIIAQLTQMQVPYQYTEGGGAILVPADKVHDTRLRLASQGLPK 103 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 S +G+EL + + FG T F + + R LEGE+ R+IQ++S + +ARVH+ +P F Sbjct: 104 GSV-TGFELME-NSRFGATQFQERVNFQRGLEGELTRSIQALSSVQSARVHLALPQQNGF 161 Query: 165 RKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-- 220 + +P+ASV++ + I HLV+++VP + V+++D TGKLL+ + Sbjct: 162 FREQQKPSASVLLTLYPGRILDRAQIAGIVHLVSSSVPEMKPEAVSIVDDTGKLLSQSPD 221 Query: 221 --EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 + + + L VQ I+ + I L +G N ++ V A+++ + + Sbjct: 222 GAAGQDGVDTQQLKYVQQIEAQYRQRILDILEPVVGKGNVQAQVTADVDFSQSEQTSETH 281 Query: 279 DPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPHVSDRKV--------------- 320 P+ + S+ S P + N P + Sbjct: 282 TPNQAPDTGAVRSQQTLESTNPGPAGPSGIPGAVSNQPPGPNSAPINAAAQALAPGVPQA 341 Query: 321 ----------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTE 370 + + +KE NYE++ ++RLS AVVVN+ + Sbjct: 342 QAQAQGRAGQTAQAAAPVSTRKESVINYEVDKTVRVVRAARGAIKRLSAAVVVNQRTQAD 401 Query: 371 VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV--QVSF 428 G A + ++ +V + G N RGD++ + + F+ + + Q Sbjct: 402 ARGNVAPVPLTQQQVDQMTALVRESIGFNGDRGDSVNLMNAPFVVDAKADESLAFWQQPA 461 Query: 429 MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSA 488 + L+R A + A++ + L L+ + + Sbjct: 462 VQELARDLAWPVGAVLLALVVLFGV--VRPVLKAMQAPPPPQ------------------ 501 Query: 489 VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRK 548 LD+ + + + ++ + N A I++ Sbjct: 502 ------------LDALLDEDLELGLQDPIKKGPRIQERQLEEARKLARENPAAVAGIVKN 549 Query: 549 WARSEIED 556 W S +D Sbjct: 550 WIGSNKDD 557 >gi|121533763|ref|ZP_01665590.1| flagellar M-ring protein FliF [Thermosinus carboxydivorans Nor1] gi|121307754|gb|EAX48669.1| flagellar M-ring protein FliF [Thermosinus carboxydivorans Nor1] Length = 511 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 142/558 (25%), Positives = 238/558 (42%), Gaps = 61/558 (10%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 +Q LQ ++S + R LI AS V + + + ++ Y LY L++ D + Sbjct: 6 EQSLQIWRSLGK--KQRYLIAASAFFVFAAILLWSYWWGGRIDYVPLYTGLDLKDAGEVV 63 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L E + +I NGS+I VP+ V + R+ LA+QGLP G+E+FD+ FG+T Sbjct: 64 GKLKEMKVPHQIEANGSAILVPAKDVHRVRLELASQGLPRGYK--GFEIFDQT-KFGITD 120 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP-- 182 F Q++ ++AL+GE+ RTI+ ++ + ARVHIV+ + ++K TASVM++ Sbjct: 121 FQQKVYLLQALQGELTRTIEQMAEVEKARVHIVLAEDSLYKKNEKPATASVMLKLRPGVQ 180 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG----KSLSIVQAIQ 238 + I +LVA ++ L +VTV+D+ ++L G L + + IQ Sbjct: 181 LSREQVRGIVNLVAHSIQGLKPENVTVVDNYARVLNDQVDTPFTAGTIPVTQLELTKKIQ 240 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQ 295 +++ N++ L LG + V ELN D + I +++P D + RS++ + Sbjct: 241 EDLQKNVHTLLEQVLGPGKAAARVSVELNFDQRTIDRQIFEPIVDDKGIIRSMQEMSETY 300 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 R N+P V + N +KKE NYEIN ++ Sbjct: 301 RGSAPVAGGVPGTTANIPGY----VTGANNQSNYEKKEVTRNYEINETKEKVVTAPGAIK 356 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 RL++AV+V+ S D+ K +S I K V++A G+N RGDTI++ S+ F Sbjct: 357 RLTVAVLVD---------ASIDRAKQES----IAKTVASAVGLNPSRGDTISVESIPFST 403 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + +F + I A + LL RL +K E Sbjct: 404 ELQERQRREEQAFEQQQRQELWLKIGAAAIGLIALLYI-------MRLFVRRQQQKEESE 456 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 +I+ P P S + + + Q + + Sbjct: 457 VVTIVPPQPQSVPIKSKELTPQE-----------------------KERLQQRETVEKLA 493 Query: 536 EINEERFAKILRKWARSE 553 + E A ++R W E Sbjct: 494 KSKPEEVAHLIRTWLAEE 511 >gi|114777411|ref|ZP_01452408.1| flagellar M-ring protein FliF [Mariprofundus ferrooxydans PV-1] gi|114552193|gb|EAU54695.1| flagellar M-ring protein FliF [Mariprofundus ferrooxydans PV-1] Length = 547 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 143/545 (26%), Positives = 245/545 (44%), Gaps = 49/545 (8%) Query: 17 LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76 L + R L+L + + F+ + + Y +Y +E D + L + +I +R+ Sbjct: 38 LVKYRRLMLFIAASLMLAGFIGLVLWSSEKPYRAVYAGMEEKDAATVVEMLQKEHIPYRL 97 Query: 77 SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136 + G ++ VP V + R+ LA QG+ + SGYELFDK N FGL+ F ++I RA++ Sbjct: 98 -EGGGTVMVPEDQVYEVRMKLAGQGINPRGT-SGYELFDKSNEFGLSDFTRKINLQRAMQ 155 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHL 194 GE+ARTI+ + + AARVH+V+P +F + TASVM++ + AI++L Sbjct: 156 GELARTIEVMPQVSAARVHLVLPKESAFADRDRKATASVMLQLSGSQRLSKNTVLAIQNL 215 Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL--SIVQAIQHEIEMNINKALAAF 252 VA++V +++ DVTV+D++G LL+++E E ++ +E + L Sbjct: 216 VASSVAEMNVADVTVVDASGTLLSSSEKETPSSEGQTLQEYQSKLEQRLEQRLTGMLEQI 275 Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNM 312 +G V A+++ + + Y+PD +V RS + ++ S +S + N Sbjct: 276 VGEGQSVVRVSADIDREFIDQQSTRYNPDEQVLRSRKSIVESHTSSSSGAMGVPGLASNT 335 Query: 313 PH----VSDRKVPLPRSLENTDKKEEQSN-YEINTKSIATTHDNYKLERLSIAVVVNKGR 367 P S++ P NT K+ E N YEI++ S +++LS+A +V Sbjct: 336 PGSNPATSNKTAAAPSQPGNTAKRNEDVNNYEISSTSEHRVVPFGNIKKLSVAAIVGGHM 395 Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVS 427 T+ G + + LAEI K+V +A G + RGD++T+ SM ++ +S + Sbjct: 396 QTDAKGVQTFVPRSRAELAEIQKLVESAMGYDEDRGDSVTVQSMPLMD---ISSSADTAA 452 Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN--IDDAKKGEVGGKSILSPPPI 485 +R F + A + + L + LG LR L D + GK P Sbjct: 453 LDKAEARVF--YMKAARYGIAALALMLLGWFVLRPLAKRIQDSTPHDQTAGKPAPVTPLH 510 Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545 S T + N ++ IE+ ER K+ Sbjct: 511 LSDSTYKRLANME-------------------------------QVRSSIELQPERATKV 539 Query: 546 LRKWA 550 LR+W Sbjct: 540 LREWV 544 >gi|222112250|ref|YP_002554514.1| flagellar m-ring protein flif [Acidovorax ebreus TPSY] gi|221731694|gb|ACM34514.1| flagellar M-ring protein FliF [Acidovorax ebreus TPSY] Length = 564 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 133/564 (23%), Positives = 240/564 (42%), Gaps = 42/564 (7%) Query: 12 KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71 + SL R L L V + + +AA F+ P Y L+ L D I LS+ N Sbjct: 21 QRLASLDRAARLRLGVVAALLVAALLAAFFYSRQPDYRVLFSGLNDKDGGAIVAQLSQMN 80 Query: 72 IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131 + ++ ++ G +I VP+ V R+ LA QGLP S +G+EL + N FG+T F + + Sbjct: 81 VPYKYTEGGGAILVPAERVHDVRLRLATQGLPKGSV-TGFELME-TNRFGVTQFQERLNF 138 Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-- 189 R LEGE+ R+IQ+++ + +ARVH+ +P F + +P+ASV++ A+ Sbjct: 139 QRGLEGELTRSIQALASVQSARVHLALPQQNGFFREQQKPSASVLLSLYPGRFLDRAQLA 198 Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMNINK 247 I HLVA++VP L V+VLD TGKLL+ + + + L+ VQ I+ + I Sbjct: 199 GIVHLVASSVPELAPSAVSVLDDTGKLLSQTPDMAGAGVDAQQLAYVQQIEQQYARRILD 258 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYD----PDSKVERSIRLSKDAQRSETSQPE 303 L +G +N ++ V AE++ + + + PD+ RS ++ + P Sbjct: 259 LLEPVVGKNNVKAQVTAEVDFNQTESTVEQHKPNLAPDASAVRSQQVVESGGTPGAQPPT 318 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENT-------------DKKEEQSNYEINTKSIATTHD 350 N P + + T K+E +NYE++ + T Sbjct: 319 GVPGAVTNQPPQASAAPINGANPAPTAAGGAPGSGAAGQAKRESITNYEVDKTTQVTRGG 378 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSA-DQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 ++R++ AVVVN ++E G+ A ++ L ++ +V G N RGD++ + Sbjct: 379 AGAIKRVNAAVVVNYQPVSEGPGKPAVNKALTPEQLEQMTALVRETIGFNKERGDSVNLM 438 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 + FL ++ + + + L + +G L + L L R A Sbjct: 439 NAPFLVEEVPPGELPLWKQPETIE-----LAKTLGWPLGISLAAAILLLGLLRPALKARA 493 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 + ++ + SA+ + + + + +++ + L+ Sbjct: 494 RAVQMAAQQPAGA--QLSAIASEELQRPGLPAPAQPEELQPTAEQLR-----------LE 540 Query: 530 RLLHMIEINEERFAKILRKWARSE 553 + N A IL+ W + Sbjct: 541 EARQLARDNPVAVASILKTWVNGD 564 >gi|291288216|ref|YP_003505032.1| flagellar M-ring protein FliF [Denitrovibrio acetiphilus DSM 12809] gi|290885376|gb|ADD69076.1| flagellar M-ring protein FliF [Denitrovibrio acetiphilus DSM 12809] Length = 555 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 133/568 (23%), Positives = 255/568 (44%), Gaps = 29/568 (5%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 MA+ D QF + L + + +A+ + + ++ N P Y L+ + D Sbjct: 1 MALSDIASQFKDTYLKLSLLQKISVAAALAAVFISVAVIVYWANRPVYKTLFAGMTQDDA 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 + +L E I +++ D G+ I++P V + R++LA + +P +G ELFDK +SF Sbjct: 61 ALVVDSLKEQRIPYKLEDGGAKITIPDQYVYETRLNLAKENIPRGGG-AGLELFDK-SSF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 G+T FMQ ++ RAL+GE+ARTI ++ I ARVH+ + F A+V++R Sbjct: 119 GMTEFMQNVSYQRALQGELARTITALKEIQEARVHLTVSKDRLFIADEEASKAAVVLRLR 178 Query: 181 NPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN----ILGKSLSIV 234 + + +AI LV+ AV L +V ++D+ G+LL+ E N + L Sbjct: 179 SGASLGRAEVQAIASLVSGAVKGLSPENVQIVDTQGRLLSEFLDEENSPLMMTQSQLEYT 238 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 + I+ ++E +N+ L A LG N + V AE++ + + + + Y D+ V RS + + Sbjct: 239 KKIERDLERKVNEILGATLGKGNAVAKVTAEIDFNKRDVTKEEYG-DTPVLRSQQSME-- 295 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 S T++P+ + ++++ + + +K E+ N+EIN + Sbjct: 296 -ISSTNKPDGPQGIPGVQSNLAEPDIGTAGRNQEYNKTEDTQNFEINKTITVEQKAYGTI 354 Query: 355 ERLSIAVVVNKGRLTEVLGRS----ADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 +R+++AVVV+ ++ + Q + D + I +V+ A G N RGD I +T+ Sbjct: 355 DRVTVAVVVDDRKIRQQDDNGESTIVSQRRSDDEMRSIRNLVAMAVGYNEPRGDQIEVTN 414 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALV--FLVGTLLVTFLGLHALRRLHNIDD 468 + F T + D L R + +V +L+ L+V +RR+ D Sbjct: 415 ISF-------DTTSKDHEYDTLKREKTMELVGMVSKYLLAALIVLLFYFLVIRRILKRLD 467 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIA---LDSSNQDIFSHSRNLQSRINSYVSK 525 K V ++ I + + +D+ + + + +++ SK Sbjct: 468 -KPVTVHEDGSITYGQIDGEMGIDITLDDSYPKTLEELEREIESELEESSPMDVDTVKSK 526 Query: 526 QSDLRLLHMIEINEERFAKILRKWARSE 553 ++ + + A +L+ R + Sbjct: 527 VMLKKIEEFATEDPDAMASLLKTLMRGD 554 >gi|121596094|ref|YP_987990.1| flagellar M-ring protein FliF [Acidovorax sp. JS42] gi|120608174|gb|ABM43914.1| flagellar M-ring protein FliF [Acidovorax sp. JS42] Length = 564 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 133/564 (23%), Positives = 240/564 (42%), Gaps = 42/564 (7%) Query: 12 KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71 + SL R L L V + + +AA F+ P Y L+ L D I LS+ N Sbjct: 21 QRLASLDRPARLRLGVVAALLVAALLAAFFYSRQPDYRVLFSGLNDKDGGAIVAQLSQMN 80 Query: 72 IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131 + ++ ++ G +I VP+ V R+ LA QGLP S +G+EL + N FG+T F + + Sbjct: 81 VPYKYTEGGGAILVPAERVHDVRLRLATQGLPKGSV-TGFELME-TNRFGVTQFQERLNF 138 Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-- 189 R LEGE+ R+IQ+++ + +ARVH+ +P F + +P+ASV++ A+ Sbjct: 139 QRGLEGELTRSIQALASVQSARVHLALPQQNGFFREQQKPSASVLLSLYPGRFLDRAQLA 198 Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMNINK 247 I HLVA++VP L V+VLD TGKLL+ + + + L+ VQ I+ + I Sbjct: 199 GIVHLVASSVPELAPSAVSVLDDTGKLLSQTPDMAGAGVDAQQLAYVQQIEQQYARRILD 258 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYD----PDSKVERSIRLSKDAQRSETSQPE 303 L +G +N ++ V AE++ + + + PD+ RS ++ + P Sbjct: 259 LLEPVVGKNNVKAQVTAEVDFNQTESTVEQHKPNLAPDASAVRSQQVVESGGTPGAQPPT 318 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENT-------------DKKEEQSNYEINTKSIATTHD 350 N P + + T K+E +NYE++ + T Sbjct: 319 GVPGAVTNQPPQASAAPINGANPAPTAAGGAPGSGAAGQAKRESITNYEVDKTTQVTRGG 378 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSA-DQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 ++R++ AVVVN ++E G+ A ++ L ++ +V G N RGD++ + Sbjct: 379 AGAIKRVNAAVVVNYQPVSEGPGKPAVNKALTPEQLEQMTALVRETIGFNKERGDSVNLM 438 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 + FL ++ + + + L + +G L + L L R A Sbjct: 439 NAPFLVEEVPPGELPLWKQPETIE-----LAKTLGWPLGISLAAAILLLGLLRPALKARA 493 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 + ++ + SA+ + + + + +++ + L+ Sbjct: 494 RAVQMAAQQPAGA--QLSAIASEELQRPGLPAPAQPEELQPTAEQLR-----------LE 540 Query: 530 RLLHMIEINEERFAKILRKWARSE 553 + N A IL+ W + Sbjct: 541 EARQLARDNPVAVASILKTWVNGD 564 >gi|114765263|ref|ZP_01444395.1| flagellar M-ring protein [Pelagibaca bermudensis HTCC2601] gi|114542398|gb|EAU45426.1| flagellar M-ring protein [Roseovarius sp. HTCC2601] Length = 535 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 149/533 (27%), Positives = 249/533 (46%), Gaps = 16/533 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92 + V +P Y LY L ++ R+ +L +A I R G+++SVP + + Sbjct: 2 VFAMFFGLSAVTTPDYVALYRDLSPAEAGRMVESLEQAGIRSRTDMAGTAVSVPGEDMAR 61 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 AR+ LA GLP+ + G+E+FD+ + G+ +FMQ + R RA+EGE+AR+IQ+I G+ AA Sbjct: 62 ARMLLAGAGLPNDGTP-GWEIFDEASGLGMNTFMQRVNRARAMEGELARSIQTIDGVEAA 120 Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDS 212 RVH+V+P+ F + RP+ASV++R + A AIR LVA+AVP+L VTVL + Sbjct: 121 RVHLVLPEREPFSRERPRPSASVIVRGSRQVGMRQARAIRSLVASAVPDLAPAQVTVLSA 180 Query: 213 TGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272 TG+ + + + E S I+ + I + L+A +G N R V +L + Q Sbjct: 181 TGETILSEDGEAGSEASLQSARAQIEDRLGQRIAQILSARVGAGNARVQVSVDLTTERQV 240 Query: 273 IREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332 +RE YDPD +V RS ++ + +T+ V V ++P VP + + Sbjct: 241 VREQTYDPDQRVVRSTETREETREDQTA-AGGEVGVADDIPAALAADVPG-NNRNTANST 298 Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV 392 E NYEI S T + +E++S+AV+VN + G + + L + +V Sbjct: 299 NEIVNYEIGGTSSETVREPGDIEKVSVAVLVNGIYNVQDGGAVDYEERSQEELQRLEALV 358 Query: 393 SAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452 +A G + RGD++ + S+ F++ + V SF L+ + T++ + L V Sbjct: 359 QSAIGFDEARGDSVEVVSLRFMDYSMDVGEPVSRSFAQTLTENTGTILRGVFALALVAAV 418 Query: 453 TFLGLHA-LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSH 511 LG+ L R+ + +G L P A TTG + A + ++ Sbjct: 419 LALGVRPALNRVFDQPAIAEGGSADLPGLPPSGNLPATTTGESATASNAQGGGERPVYQT 478 Query: 512 SRNLQ------------SRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 L + + V + + +IE E ++R W Sbjct: 479 GTVLDPLPPGADEMVELAAVQGGVPRGLINTVSELIEREPEGAITVVRSWLAE 531 >gi|109899352|ref|YP_662607.1| flagellar MS-ring protein [Pseudoalteromonas atlantica T6c] gi|109701633|gb|ABG41553.1| flagellar M-ring protein FliF [Pseudoalteromonas atlantica T6c] Length = 568 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 100/560 (17%), Positives = 221/560 (39%), Gaps = 27/560 (4%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 +Q F S S R L L +++ + + + + P Y L K++ ++ Sbjct: 26 EQKSGFMDSLGSTDMVRQLTLVVALVICVAIAVFIMIWAQEPDYRPL-AKMQTQELIEAL 84 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 + +D+R+ G+++ V + ++ +A QGL S + G ++ + FG++ Sbjct: 85 DYFDQNQVDYRLE--GNTVYVSADQYQNIKLGMARQGL-SQGVSEGTDIIMQDMGFGVSQ 141 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 ++++ A E ++ART++ +S + A+V + +P F + + +A+V++ + ++ Sbjct: 142 RVEKVRLKHAREQQLARTLEEMSAVTRAKVLLALPKENVFARREKKASATVVVTSRRGAI 201 Query: 185 Y--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240 + +I +VA+AV L+ VTV DS G+LL + + K + + + E Sbjct: 202 MGNEEVSSIVDIVASAVQGLEPERVTVTDSNGRLLNSGSQDSEAARSKKEFEMERKRETE 261 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I+ L LG+ N+ + ++ + + Y+PD RS ++ S Sbjct: 262 YLQKIDSILIPVLGLGNYTAQADVTMDFTAVEQTKRSYNPDLPAVRSEMTVEEN--SVGG 319 Query: 301 QPESAVTVEQNMPHVSDR------KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 N P + ++ + KEE NYE++T T + Sbjct: 320 MLGGIPGALTNQPPLDSNIPEEASASNTQTTVPGRNHKEETRNYELDTTISHTKQQTGVI 379 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 RLS++V ++ G S + + L +I +++ G + RGD++ + S+ F Sbjct: 380 RRLSVSVALDHVSTVGEDGTSTLVPRSQAELLDIRRLLQGGIGFDVTRGDSLEVVSIPFS 439 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 + + VI LV +V L V L L ++ + K E Sbjct: 440 REGEVALEELPIWEDPKFMPILKLVIGGLVIIVLLLAVVRPMLRKL--IYPEETTSKDEF 497 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 L + ++ + + + + + + + + + + Sbjct: 498 DADEGLDLGDETISMLSQEFDDSQVGFAADGSFMLPDLHKDEDVLKA---------VRAL 548 Query: 535 IEINEERFAKILRKWARSEI 554 + E +++++ W + Sbjct: 549 VANEPELSSQVVKNWLLQDE 568 >gi|221069298|ref|ZP_03545403.1| flagellar M-ring protein FliF [Comamonas testosteroni KF-1] gi|220714321|gb|EED69689.1| flagellar M-ring protein FliF [Comamonas testosteroni KF-1] Length = 568 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 118/572 (20%), Positives = 234/572 (40%), Gaps = 60/572 (10%) Query: 12 KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71 + ++L R + L ++ + + +AA F P Y L+ + D I L++ N Sbjct: 26 QRWSALDRGQRLRWGALAALVAVGLVAAAVFYRQPDYKMLFSNVSDKDGGAIVAQLTQMN 85 Query: 72 IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131 + ++ S+ G +I +P+ V R+ LA QGLP S +G+EL + + FG+T F + + Sbjct: 86 VPYKYSEGGGAILIPADRVHDVRLKLATQGLPKGSV-TGFELME-NSKFGITQFQERLNF 143 Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAE 189 R LEGE+ R+I +++ + +ARVH+ +P+ F + +P+ASV++ + Sbjct: 144 QRGLEGELTRSILALNAVQSARVHLALPNQNGFFREQQKPSASVLLSLHPGRMLDRAQIA 203 Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQAIQHEIEMNINK 247 I HLVA++VP ++ V+V+D TGKLL+ + + + Q ++ + I Sbjct: 204 GIVHLVASSVPEMEPSAVSVVDDTGKLLSQSPDGNAGGVDMQQFLYTQQVEQQYVRRILD 263 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP----DSKVERSIRLSKDAQRSETSQPE 303 L +G +N ++ V AEL+ + + P D RS ++ + + P Sbjct: 264 ILEPVVGKNNVKAQVSAELDFSQTESTSEQHRPNQSTDGGAVRSQQVMETNGDKTATPPT 323 Query: 304 SAVTVEQNMPHV-----------SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 N P + + + +K+E +NYE++ T Sbjct: 324 GVPGATSNQPPQNSTAPINGANPAPQAAGAGQGNAQGNKRESITNYEVDKTVKVTRGSTG 383 Query: 353 KLERLSIAVVVNKG-----------RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR 401 ++RL+ AVVVN S + ++ +V G ++ Sbjct: 384 TVKRLTAAVVVNAPLAAAAGTDAATAAAAAAVSSGLRPLTAQQQEQLLTLVRETVGYSAD 443 Query: 402 RGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461 RGD++ + S F+++ + +I + + + + L G L++ L L+ Sbjct: 444 RGDSVNLVSAPFMDSGAAPAELPMWKDPEIQAMAKSLGVPIALALFGALVLLGLVRPLLK 503 Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521 + + + +++ D AL + +D+ Sbjct: 504 GRNTSPGGQLNAIEAEAL-----------------DRPALPAPAKDLSPTKE-------- 538 Query: 522 YVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ + H+ + N A I++ W E Sbjct: 539 ---QERLDQARHLAKQNPIAVANIVKTWINGE 567 >gi|315127319|ref|YP_004069322.1| flagellar MS-ring protein [Pseudoalteromonas sp. SM9913] gi|315015833|gb|ADT69171.1| flagellar MS-ring protein [Pseudoalteromonas sp. SM9913] Length = 571 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 96/558 (17%), Positives = 220/558 (39%), Gaps = 23/558 (4%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 +Q +F + + R + L + + + + + + P L K++ ++ Sbjct: 27 EQKSGYFSALGGVDVLRQITLIVALAICLAIAIFVIIWARQPDMRPL-GKMQTEELIETL 85 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L ID+++ +G+ +SV + ++ + +GL SG ++ + FG++ Sbjct: 86 DFLDAQKIDYQL--DGNVVSVDETEYQNIKLLMTREGL-DQGPTSGSDIIMQDMGFGVSQ 142 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 ++ E ++ARTI+ ++ + A+V + +P F + +P+A+V++ Sbjct: 143 RLERERLKHGREQQLARTIEELNNVTRAKVLLAIPKENVFARREKKPSATVVLTLKRGRS 202 Query: 185 Y--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHE 240 + +++ ++A+AV L+ VTV D G+LL + K I + + E Sbjct: 203 LDGEEVDSVVDMIASAVQGLEPSRVTVTDQNGRLLNSGSQTSLAARSRKEYDIERKREQE 262 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I+ L +G+ N+ + V ++ + + Y+PD RS ++ + Sbjct: 263 YLEKIDSILIPVVGLGNYTAQVDLSMDFSAVEETQKRYNPDLPAVRSETTFEENNIGGLA 322 Query: 301 QP-----ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 + V +P + + + KE NYE++T + Sbjct: 323 VGIPGALTNQPPVNSTIPEDAMAGGAGTATSPSRTHKEATRNYELDTTISHKRQQTGVIR 382 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 R+S++V V+ G + + L+ I +++ G + +RGD + + ++ F+ Sbjct: 383 RISVSVAVDYLPTVGENGETTMTPRSVEALSNIRRLLQGGVGFDMQRGDALEVVTVPFVR 442 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + + D + V+ ALV +V L V L+RL D+ + E Sbjct: 443 EDSALDFELPLWEQDWFMKMMRLVLGALVIIVLILAV---VKPMLKRLIYPDNTLE-EYD 498 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 S+ S + + L + + A + D +L + + + ++ Sbjct: 499 EDSLSSGVDLGDSTLDMLNNDFDSASVGFSSDGTLRLPDLHGDEDLLKA------VRALV 552 Query: 536 EINEERFAKILRKWARSE 553 E +++++ W + Sbjct: 553 ANEPELSSQVVKAWLTED 570 >gi|327399353|ref|YP_004340222.1| flagellar M-ring protein FliF [Hippea maritima DSM 10411] gi|327181982|gb|AEA34163.1| flagellar M-ring protein FliF [Hippea maritima DSM 10411] Length = 550 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 134/553 (24%), Positives = 247/553 (44%), Gaps = 27/553 (4%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L+Q+ +F+ ++ R + +IL S + V + + + Y L+ L D + I Sbjct: 7 LEQVKKFY---NTMNRQQRIILFSSVGVLVAGILFILIASSKVAYAPLFTNLNAKDASDI 63 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L++ + +++ + G+ I VP MV R+ L A GLP G+E+FDK N F T Sbjct: 64 VTYLNQHGVKYKLINGGTVIEVPKDMVYSLRLDLVAAGLPKHGV-VGFEIFDKQN-FSTT 121 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 +F++ I +RALEGE+ RTI +I+ I +A+V+I +P F + PTAS+++ P Sbjct: 122 NFVENINYIRALEGELTRTIANINEIKSAKVNIAIPKPTIFTESQQPPTASIVLDLYKPL 181 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEIE 242 + AI+ LVA+AVP L DVT++DS G LL+ N + + L Q I+ + Sbjct: 182 TRQQIVAIQKLVASAVPGLSYKDVTIVDSDGNLLSVNIPDEQLLTANELKYKQFIEQRYK 241 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 I LA LG D F +V EL++ + + ++YDP+S V + S T Sbjct: 242 SRIKSMLAPILGKDKFVVSVDVELDLSKIKKKSVIYDPNSVVVSEE---NEESTSTTPTS 298 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 V N+ + ++ + K + +NY++ T K++++S AVV Sbjct: 299 GGVPGVISNIDNKTNAAAA--SGTAKSSKSKTITNYDVGRTETITEGPLIKIKKISAAVV 356 Query: 363 VN--KGRLTEVLGRSA---DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 V+ + G+ + + ++ I + V +A G +++RGD +T+T M F + Sbjct: 357 VDGIYEPVKNKKGKVVSYKFKSLPQNTISTIQQAVMSAIGYDNKRGDKVTVTCMKFAMSG 416 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 G V + +++ + ALV + L ++ + + + + G Sbjct: 417 EKQMGNVSLGGGNMVVNLASYYKYALVAFLLALFYFLFLRKFIKNVMTVSSVRAKKTEGT 476 Query: 478 SILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 + + ++ G + IA + + + + + ++ Sbjct: 477 AETTSEELTENEVKGKSIREIEEEIASKLDEEGVVDEEKIRANMMED--------KIREA 528 Query: 535 IEINEERFAKILR 547 E N E A +L+ Sbjct: 529 AEENPEEIANLLK 541 >gi|332526951|ref|ZP_08403040.1| flagellar M-ring protein FliF [Rubrivivax benzoatilyticus JA2] gi|332111390|gb|EGJ11373.1| flagellar M-ring protein FliF [Rubrivivax benzoatilyticus JA2] Length = 554 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 123/563 (21%), Positives = 223/563 (39%), Gaps = 44/563 (7%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 F T+L ++ + + + + + + Y L+ + D I L++ Sbjct: 19 FVARLTALPMKTKVMAGAGLAALLAIVVVLALSLKQDDYRVLFANVGEKDGGAIVEKLAQ 78 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 N+ +R S+ G +I VP+S V R+ L+A GLP S +GYEL DK +FG T + I Sbjct: 79 MNVPYRFSEGGGTIMVPASQVYDLRLKLSAAGLPK-GSITGYELLDKT-AFGQTQGQERI 136 Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE 189 RALEGE+ RTIQ++S + ARVH+ +P+ F + +P+ASV++ A+ Sbjct: 137 NLQRALEGELTRTIQTLSSVETARVHLALPNQNGFFREQQKPSASVVLTLRPGHTLDRAQ 196 Query: 190 --AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNIN 246 I HLV+++VP L V+VLD G LL++ + + + + L V+ ++ +N Sbjct: 197 LAGIVHLVSSSVPELSAKAVSVLDGDGSLLSSQDNASQGLDTQQLQYVREVEATYLRRVN 256 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK----VERSIRLSKDAQRSETSQP 302 L LG DN R+ V AE++ + + P+ R+ R+S+ + + P Sbjct: 257 DLLEPVLGRDNLRATVTAEVDFSQTEQTSEEFKPNQGDNPAAVRASRVSESTRPGA-NVP 315 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLE----------NTDKKEEQSNYEINTKSIATTHDNY 352 N P V + +++ ++ YE++ Sbjct: 316 SGVPGAVSNQPPVPASAPINGPAQALQAANGGAAGGNAQRDAETRYEVDKTVRVIRGATG 375 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 + R++ AVVVN + G+ L ++ +V G + RGD++ + + Sbjct: 376 TVRRINAAVVVNHRNGVDAKGKPTSTPLSQEELDKLTALVEQGIGFSKERGDSVRVVNAP 435 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F + + V + + + ++ L+V F Sbjct: 436 FRVEKAPEAEEVPIWQQPWVLDLLRSGATPAALVLVALIVVF--------------TLIR 481 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 + P PI T + + AL +Q + ++ + Sbjct: 482 PAIKAAAAKPEPI-KGETVDELVDGGAALPGPDQLPALEAPRSNDKLEAA---------R 531 Query: 533 HMIEINEERFAKILRKWARSEIE 555 + N A I+R W E Sbjct: 532 KLARENPAAVANIVRGWVSGEAA 554 >gi|124516311|gb|EAY57819.1| Flagellar M-ring protein FliF [Leptospirillum rubarum] Length = 531 Score = 368 bits (946), Expect = 1e-99, Method: Composition-based stats. Identities = 133/566 (23%), Positives = 226/566 (39%), Gaps = 53/566 (9%) Query: 4 LDQLLQFFKSGTS----LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 +D L Q F++ + R + + V + + + S L+ L D Sbjct: 1 MDALRQIFQNLLDRFMQMPVARRMTVLVVFVGMMAGGVFFSMMEKSGGDGVLFSNLSPGD 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I L+ + + +S GS I VPS V R+ LA +GLP +G++LF+ S Sbjct: 61 SMAIQGRLNRLGVPYHLSKKGSVIRVPSGQVYALRMELADEGLPRH-HGAGFDLFNH-PS 118 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 T F+Q + + AL+ E+ RTI+ ++ I ARV IV+P F + + ASV++R Sbjct: 119 LATTDFVQRVQYLEALQTELDRTIEEMTPIALARVSIVLPRRTVFLREPDQSHASVLVRL 178 Query: 180 INPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME---RNILGKSLSIV 234 + I HLVA AVP L VTV+D+ G++L + LS Sbjct: 179 KPGMTLEHPQVNGIVHLVANAVPGLSASRVTVVDTEGQILNRKRRGLVPGELTEAQLSYQ 238 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 + ++ ++ + L LG D V AELN + +DP+ +V + ++ Sbjct: 239 REVEQSVQHQLQSMLDKVLGPDQSVVRVSAELNFRQVEKSSRTWDPNGRVLKDREQIREK 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT-----DKKEEQSNYEINTKSIATTH 349 P V NMP + + P +NT KK++ ++Y ++ T Sbjct: 299 STGSRILPIGVPGVLSNMPGANGKVASPPMGPKNTAETRYSKKKQIAHYHVSRTDQHVTE 358 Query: 350 DNYKLERLSIAVVVNKGRLT---EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 L R+S++V+VN +T + ++ Q + + + +IV A G +S RGD + Sbjct: 359 PVGNLRRISVSVLVNAVPVTIQSKTGPKTVMQPRDPKEIQDFTRIVQNAIGFDSARGDQV 418 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 + S+ F + + SF + L A + L +G LL+ L LR L Sbjct: 419 VVLSVPFSGTAAPSPKNIDQSFQEKL----APFVPLLEIFLGGLLLVIFSLLVLRPLLKA 474 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 K EV PP+ A + + Sbjct: 475 MVQWKPEVSPMQPAEGPPLGKAEV------------------------------AETVRS 504 Query: 527 SDLRLLHMIEINEERFAKILRKWARS 552 S + M + + + A ++R W + Sbjct: 505 SRDEVARMTQEDPGQAATVVRSWLKE 530 >gi|209963531|ref|YP_002296446.1| flagellar M-ring protein FliF [Rhodospirillum centenum SW] gi|209956997|gb|ACI97633.1| flagellar M-ring protein FliF [Rhodospirillum centenum SW] Length = 573 Score = 368 bits (946), Expect = 1e-99, Method: Composition-based stats. Identities = 154/549 (28%), Positives = 266/549 (48%), Gaps = 5/549 (0%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + ++ +LG+ R+++LA+ ++ F ++ LY L+ ++ RI Sbjct: 24 VANLLQNLRALGQRRLMLLAAAGAGVLLAVALVAFGLSRAPMGLLYAGLDDAEAGRILTQ 83 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L + +++S G +I +P + + R+ LA QGLPS+ +GYELFD+ + GLTSFM Sbjct: 84 LQSMKVPYQVSGTGGAILLPQDQIARTRMLLAQQGLPSAGG-AGYELFDEQGALGLTSFM 142 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS-VY 185 Q + + RALEGE+ARTIQ+++G+ +ARVH+ MPD +F A ASV++R + Sbjct: 143 QRLNKARALEGELARTIQTLNGVKSARVHLSMPDGEAFAPGAAPAGASVVVRTVTGGLDR 202 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEM 243 A AIRHLVAAAVP L G VTV+D++G +L A+ + L + + A + + Sbjct: 203 SQALAIRHLVAAAVPRLQPGAVTVMDASGVVLAADGGATDGLALLHAEELRSATETRLAR 262 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 I + L G N R V AE+++ + +RE +DP+S+V RS + ++ + S + Sbjct: 263 AIEEMLVPRFGPGNIRVRVAAEIDLGRETLREQTFDPNSRVLRSTQTVEERESSLDRDTD 322 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 TVEQN+P + S + ++EE +NYEI++ D ++ RL++AVVV Sbjct: 323 QPTTVEQNLPLEAADAQAPQGSRSESAREEETANYEISSILRERAQDAGEIRRLAVAVVV 382 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 N + G+S Q + D L+ I +V A G + RRGD + + ++ FL Sbjct: 383 NGSYVPGADGKSVYQPRSDEELSRIEHLVRTAIGFDDRRGDMVAVENLQFLAGPEEPVAA 442 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 + + + ++ +V L++ + + R + + L+ Sbjct: 443 PATEPGLVGNDMVRLLQWVVLGVVAVLVILLVLRPLVLRSKEVPAPAAAQAAAPPQLADA 502 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 A +D + +L+S + VS + RL +++ + E Sbjct: 503 TTPVAGQLTHEGSDLVPAGEEGSQEMDDIVDLRS-VEGGVSAAALRRLAGIVDEHPEESI 561 Query: 544 KILRKWARS 552 +LR W Sbjct: 562 TVLRTWIYE 570 >gi|220932525|ref|YP_002509433.1| flagellar M-ring protein FliF [Halothermothrix orenii H 168] gi|219993835|gb|ACL70438.1| flagellar M-ring protein FliF [Halothermothrix orenii H 168] Length = 519 Score = 368 bits (946), Expect = 1e-99, Method: Composition-based stats. Identities = 137/559 (24%), Positives = 234/559 (41%), Gaps = 57/559 (10%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++Q + + + + I+ V L+ ++L +A +SP Y L+ L D + I Sbjct: 9 IEQFKELWSNLNKRAKVVIISGVGVDLLTLILIIAM---GSSPDYQPLFSNLNPRDADAI 65 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L E I +R++DNG +I VPS V K R+ +A +GLPS G+E+F++ N FG T Sbjct: 66 IEKLDEQGIPYRLTDNGQTILVPSQHVYKTRLDMAGEGLPSQGV-VGFEIFNQSN-FGTT 123 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP- 182 F +++ RAL GE++R+IQ++ I A+V I P F + ASV+++ + Sbjct: 124 DFERKVNFYRALGGELSRSIQAMEAIEYAKVQITAPKESLFIEEEQPAEASVLLKFVPGH 183 Query: 183 -SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM----ERNILGKSLSIVQAI 237 +AI +LVA++V LD VT++D++G LL+ N + I + Sbjct: 184 KLSPDQVKAISNLVASSVQGLDPDKVTIVDTSGNLLSRNTDKDFYNSQLTMNQFEIQRKF 243 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDA 294 +E ++ L LG DNF V A LN D +Q+ Y P D + RS + +++ Sbjct: 244 AESLENDLRAFLFKVLGPDNFTVQVKAWLNFDKRQVESKTYSPVVGDEGIVRSQQEHEES 303 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 E N+P V S + + +NYEIN K + + Sbjct: 304 YEGENPVATGVPGTTSNIPQYQS--VEEENSGGTYESSDVITNYEINEKIEKHVYSPGSV 361 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 ERLS+AV+VN + L +I V AA G + RGD +T+TSMDF Sbjct: 362 ERLSVAVIVNSSLERD-------------ELQKIRNAVQAAIGYDPERGDMVTVTSMDF- 407 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 + L + A ++ + T + + GL L + + Sbjct: 408 --------------DETLKQQVAQAQSSALQAQKTRMYIYGGLIVLILIILSILLLSFKR 453 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 +S + G + + + ++ + + + Sbjct: 454 SKESEEDMVGKAIDYMVGEEAE-----EEMAATELTEEEKKRQKMKTE--------IAEL 500 Query: 535 IEINEERFAKILRKWARSE 553 + + A+IL+ W + Sbjct: 501 VNEKPDEVAQILKSWLLED 519 >gi|283853241|ref|ZP_06370492.1| flagellar M-ring protein FliF [Desulfovibrio sp. FW1012B] gi|283571346|gb|EFC19355.1| flagellar M-ring protein FliF [Desulfovibrio sp. FW1012B] Length = 546 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 122/563 (21%), Positives = 235/563 (41%), Gaps = 39/563 (6%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++L+Q++ + ++ R ++L + + F+ + +N LY + D +R+ Sbjct: 9 FEKLIQYWSNRSAAQR---ILLGGLAGSMAIAFLVMVYLLNQAEMRVLYTNMAPEDASRV 65 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L + + + +NG+++ VP+ V + R+ +A +G+ G+ELFD++ G T Sbjct: 66 VELLKASKTPYELRENGTTVLVPAEAVYEQRLKVAGEGV-MHGQGVGFELFDQL-KVGQT 123 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 F+Q I RAL+GE++RTI + ARVH+V+P F + + +ASV++ Sbjct: 124 DFVQRINYSRALQGELSRTITEFPQVEKARVHLVLPQKSLFIEEQKKASASVVLTLKRGQ 183 Query: 184 VY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQAIQ 238 K + I +LVA +V L +T+ D+TG+ L + + G + Sbjct: 184 KLDAKQLQGIVNLVAMSVEGLTPEHITITDTTGQSLYQPRADGGLDGLSTTQFEFKNTFE 243 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 +E I + L +G + +L+ + +R+ +YDP+ V RS + S+++ Sbjct: 244 ANLENRIEQLLTPIVGPGRALAKANVDLDFSQRTVRKELYDPNVTVVRSEQKSEESTSGS 303 Query: 299 TSQPESAVTVEQNMPHVS-------DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + T + S + + ++ +NYEIN + Sbjct: 304 AAVDAGGATTTPRGGGAAVPNSNFRGDGYSGTESTQKSSRQNSTTNYEINKEEQNVVTPV 363 Query: 352 YKLERLSIAVVVNKGRLT-EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 L+R SIAV+V+ E + L I ++V+ A G++ RGD I ++S Sbjct: 364 GDLKRQSIAVIVDGTYEKVEGKNTFTFVPRKAEELERIKQVVARAAGLDPARGDEIQVSS 423 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 +F ++ + ++ R +N L+ + +LV + AL R Sbjct: 424 FEFGVPDGSGEPSLMQTMLEYAQRLGKPFLNGLLLFLFLILVVRPVVLALIRPR----VT 479 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 + E+ L A+ ++ LD + Q S + LQ Sbjct: 480 EEEIETLERLPEGEARLALAEAEEGDEVTMLDGAKQFELSKNLALQ-------------- 525 Query: 531 LLHMIEINEERFAKILRKWARSE 553 + E N E+ +L+ W + E Sbjct: 526 ---LFEENMEQSMTLLKSWLKQE 545 >gi|114569237|ref|YP_755917.1| flagellar MS-ring protein [Maricaulis maris MCS10] gi|114339699|gb|ABI64979.1| flagellar M-ring protein FliF [Maricaulis maris MCS10] Length = 551 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 143/556 (25%), Positives = 245/556 (44%), Gaps = 13/556 (2%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++ L + F++ + T I LA + +M F A + LY L+ S+ Sbjct: 1 MNALFEQFRAFGAGRLTAIFGLAVGVAAALMYFSGAMGGASQ---SLLYSGLDPSEAVAT 57 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 S L +ANI + I + G++I V V +AR+ +A+ G P S ++ GYE+FD+ +SFG Sbjct: 58 SQLLDQANIPYEIREGGTAIYVNRDQVDEARVRVASNG-PLSGASVGYEIFDRQDSFGQN 116 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 SF+Q + RA EGE+ARTIQS++ + +ARVH+ +P+ F + PTA+V I Sbjct: 117 SFVQNLNAKRATEGELARTIQSLNYVNSARVHLNLPERRLFSRDQQSPTAAVTISTAGRL 176 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ-AIQHEIE 242 + IR++VA++ + V++ D G+ L + ++ + + I+ ++ Sbjct: 177 NSEQVRVIRNIVASS-SGIAPTGVSIADDRGRQLASGSDGQSAGSMIMDERRGEIEAQLR 235 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 NI + +G R V AEL+ + YDP+ V RS +D + Sbjct: 236 QNILDIVEGVVGAGAARVQVNAELDRQSITQSSETYDPNGAVIRSRERGEDLSNDQDGAN 295 Query: 303 ESAVTVEQNMPHVSDRKVP-LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 ++ V+ +N+P D S N + E+ NYEI++ + + + RLS+AV Sbjct: 296 QNRVSASENLPDAGDGAGAEGSGSRSNRESTSERVNYEISSTTRTEIIEAGAINRLSVAV 355 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR---RGDTITITSMDFLENQL 418 V+ T G + + S + I +V +A G S R D +T++ ++F Sbjct: 356 AVDGVLETAEDGTVTWRERPQSEIDRIEALVRSAMGFVSEPGVRQDLLTVSQIEFARTDP 415 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 GT S M V V LL+ FL L + + +G + Sbjct: 416 LL-GTAAASGMSFSKSDIMRAAEIGVMFVTALLIIFLVARPLVKGASGMAMPQGLALAGA 474 Query: 479 ILSPPPISSAVTTGL--MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536 + + T L PN +AL S+ +I+ V S ++ +++E Sbjct: 475 GMDGAVAGAPAPTALPSQPNRPVALPSAGGAGGREDSIDIEKIDGQVKASSLKKVANIVE 534 Query: 537 INEERFAKILRKWARS 552 + E ILR W Sbjct: 535 SHPEESISILRTWLHE 550 >gi|220904839|ref|YP_002480151.1| flagellar M-ring protein FliF [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869138|gb|ACL49473.1| flagellar M-ring protein FliF [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 547 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 127/563 (22%), Positives = 251/563 (44%), Gaps = 26/563 (4%) Query: 2 AILDQLLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 A + Q + FK+ + + + A + + + ++ P Y LY L D Sbjct: 3 AFIQQFINSFKAVWAKMSHLQRMAAAGGAVALLAGIIGLSIWMGRPEYRVLYSNLGPEDA 62 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 + + AL + +RI+DNG++I VP +V RI +A +G G+E+FDKV Sbjct: 63 SVVVKALQSDKVAYRITDNGATIMVPQEVVYDQRIKIAGEG-GLVGQGIGFEIFDKV-KV 120 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 G T F+Q+I RAL+GE+ARTI + +ARVH+V+P F + P+ASV+++ I Sbjct: 121 GQTDFVQKINYTRALQGELARTISEFPSVESARVHLVIPRRSLFVEERQSPSASVVLKLI 180 Query: 181 NPS---VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQ 235 P+ K AI +++ +V LD G V++ D++GK+L E + I + Q Sbjct: 181 RPNIKVDQKEINAILNMMLMSVEGLDRGHVSITDTSGKVLYQPEEDSLAGITTTQMEYRQ 240 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 +Q +E I + L G + V A+++ + IR ++DP+ RS S+++Q Sbjct: 241 TVQRNLERRIEEMLQPLFGPGRVIAKVNADMDFSQKTIRRELFDPERTAVRSEYRSEESQ 300 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 + + + V + + S ++ ++ +NYEIN + + +L Sbjct: 301 QGRANLEAGSPDV-----NFRGDGITGSVSDQSGTREARTTNYEINKEEQQIVSNVGELR 355 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 RL++AV+++ G + G + L ++ ++V A G+++ RGD + ++S F + Sbjct: 356 RLTVAVLID-GTYVKADGAWTFMPRKSEELEQVRQLVHNAVGLDTGRGDALEVSSAPFTD 414 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTF-LGLHALRRLHNIDDAKKGEV 474 ++ D R ++NAL+ + +L+ + L +R + +G Sbjct: 415 SEPPRDPNFADMLADYAERLGKPLLNALLAFLFLMLIVRPVVLALIRPKVEAGEMVEGLE 474 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 G + + A+ D + + + + + + + Sbjct: 475 GLPAAEEQLALYEALEEAARTEDEV-----------PQEDDEDDLVFKDIEALKAHIFTL 523 Query: 535 IEINEERFAKILRKWARSEIEDR 557 + + E+ ++R W +++ + Sbjct: 524 SDNHMEQVVTLVRGWMKNDEAVK 546 >gi|302342347|ref|YP_003806876.1| flagellar M-ring protein FliF [Desulfarculus baarsii DSM 2075] gi|301638960|gb|ADK84282.1| flagellar M-ring protein FliF [Desulfarculus baarsii DSM 2075] Length = 560 Score = 368 bits (944), Expect = 2e-99, Method: Composition-based stats. Identities = 115/526 (21%), Positives = 217/526 (41%), Gaps = 35/526 (6%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 ++N P Y L+ L D +++ L + +D+++ G++I VP V +AR+ LA+ Sbjct: 59 FLWLNQPDYQTLFSGLSQQDASQVVNQLKDMKLDYKLESGGTTILVPEESVYEARLTLAS 118 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 GLP ++ G+E+F++V G T F+Q I RAL+GE+ARTI S + ARVHIV+P Sbjct: 119 AGLPRGTAGVGFEVFNEVQ-MGATDFVQRINYQRALQGELARTISSFGEVEDARVHIVLP 177 Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + +P+A+V++R + HLVA +VP+L VT++D+ G LL Sbjct: 178 RESLFVEDEKKPSAAVVVRLARGQSLSAGQIAGVVHLVAGSVPDLTDDRVTIVDTNGNLL 237 Query: 218 TANEMER-----NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272 +++ + L + ++ + L LG V A+++ Sbjct: 238 YRKDVDTADFPAALTASQLDYQKNLERGFVAKVQSMLEEVLGPGRAVVRVNADIDFTRTS 297 Query: 273 IREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332 + ++DPD RS + D + + P + + + ++ TD + Sbjct: 298 TTQDLFDPDQVAVRSETRASDKSINSGNMPIGSPDQRFTLAEA-NANPEEGQNQSKTDTE 356 Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS----ADQGKIDSYLAEI 388 E +NYEI+ L+RL++AV+++ + + + ++ Sbjct: 357 NETTNYEISRTQKQVQKAIGGLQRLTVAVMIDGPYKDAADAEGNTTRSFAPRSAEEMQQL 416 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G +++RGD +T+ ++ F + V D L + +N ++ L+ Sbjct: 417 TELVRRAVGYDAQRGDQVTLANIPFQLPVGTDDMGVMTWE-DYLKQWGKPALNIILALLF 475 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 LLV L R N + + + + + Sbjct: 476 FLLVIRPALKMASRYVNARS---------ELAAATRRVGPGEELPGGGMDEQAAALAESA 526 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 S ++ + +L + + + ER LR W Sbjct: 527 MSRKIGVRDQ------------ILLVAQQDPERATAALRGWIHETE 560 >gi|303326607|ref|ZP_07357049.1| flagellar M-ring protein FliF [Desulfovibrio sp. 3_1_syn3] gi|302862595|gb|EFL85527.1| flagellar M-ring protein FliF [Desulfovibrio sp. 3_1_syn3] Length = 548 Score = 368 bits (944), Expect = 2e-99, Method: Composition-based stats. Identities = 125/526 (23%), Positives = 233/526 (44%), Gaps = 22/526 (4%) Query: 37 MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIH 96 + +V P Y LY L D + + AL I ++++DNG++I VP +V RI Sbjct: 39 IGLSVWVGRPEYRVLYSNLGAEDASHVVKALQTDKIPYQLADNGATIMVPKEVVYDQRIK 98 Query: 97 LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHI 156 +A +G G+E+FDKV G T F+Q+I RAL+GE++RTI + +ARVH+ Sbjct: 99 IAGEG-GLVGQGIGFEIFDKV-KVGQTDFVQKINYTRALQGELSRTISEFPSVESARVHL 156 Query: 157 VMPDMGSFRKIGARPTASVMIRAINPSV---YKSAEAIRHLVAAAVPNLDMGDVTVLDST 213 V+P F + P+ASV+++ NP+ K AI +++ AV LD G V++ D+ Sbjct: 157 VIPQRSLFVEERQSPSASVVLKLTNPNSKPDQKEISAILNMMLMAVEGLDKGHVSITDNG 216 Query: 214 GKLLTANEMER--NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ 271 GK+L E + + +Q +E I + L G + V A+++ + Sbjct: 217 GKVLYQPEEDSLAGASSTQMEHRLQVQRNLERRIEEMLQPLFGPGRVIAKVNADMDFSQK 276 Query: 272 QIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDK 331 IR +DP+ RS + S+++Q+ + A + + S +N + Sbjct: 277 TIRREFFDPEKTAVRSEQRSEESQQGRANLEAGAPDT-----NFRGDGITGSVSDQNGTR 331 Query: 332 KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKI 391 + +NYEIN + + L RL++AV+++ G + G+ + + L + ++ Sbjct: 332 ETRTTNYEINKEEQQIVANVGDLRRLTVAVIID-GTYEKADGKWSFVPRKAEELDRVRQL 390 Query: 392 VSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLL 451 VS A G++ RGD + ++S F +++ D R ++NAL+ + +L Sbjct: 391 VSNAVGLDKGRGDLLEVSSAPFTDSEPPKDPNFADLLADYAERLGKPLLNALLAFLFLML 450 Query: 452 VTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSH 511 + + AL R + GE+ P + A + + Sbjct: 451 IVRPVVLALIR----PKVEAGEMVEGLEGLPAAEEQLALYEALEEAAKADEEGPEQEEDD 506 Query: 512 SRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIEDR 557 + I + + + + + + E+ ++R W R++ + Sbjct: 507 GELVFKDIEALKAH-----IFTLSDNHMEQVVTLVRGWMRNDETAK 547 >gi|206603154|gb|EDZ39634.1| Flagellar M-ring protein FliF [Leptospirillum sp. Group II '5-way CG'] Length = 531 Score = 367 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 132/566 (23%), Positives = 226/566 (39%), Gaps = 53/566 (9%) Query: 4 LDQLLQFFKSGTS----LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 +D L Q F++ + R + + V + + + + L+ L D Sbjct: 1 MDALRQIFQNLLDRFMQMPVARRMTVLVVFVGMVAGGVFFSMMEKTGGDGVLFSNLSPGD 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I L+ + + +S GS I VPS V R+ LA +GLP +G++LF+ S Sbjct: 61 SMAIQGRLNRLGVPYHLSKKGSVIRVPSGQVYALRMELADEGLPRH-HGAGFDLFNH-PS 118 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 T F+Q + + AL+ E+ RTI+ ++ I ARV IV+P F + + ASV++R Sbjct: 119 LATTDFVQRVQYLEALQTELDRTIEEMTPIALARVSIVLPRRTVFLREPDQSHASVLVRL 178 Query: 180 INPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME---RNILGKSLSIV 234 + I HLVA AVP L VTV+D+ G++L + LS Sbjct: 179 KPGMTLEHPQVNGIVHLVANAVPGLSASRVTVVDTEGQILNRKRRGLVPGELTEAQLSYQ 238 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 + ++ ++ + L LG D V AELN + +DP+ +V + ++ Sbjct: 239 REVEQSVQHQLQSMLDKVLGPDQSVVRVSAELNFRQVEKSSRTWDPNGRVLKDREQIREK 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT-----DKKEEQSNYEINTKSIATTH 349 P V NMP + + P +NT KK++ ++Y ++ T Sbjct: 299 STGSRILPIGVPGVLSNMPGANGKVASPPMGPKNTAETRYSKKKQIAHYHVSHTDQHVTE 358 Query: 350 DNYKLERLSIAVVVNKGRLT---EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 L R+S++V+VN +T + ++ Q + + + +IV A G +S RGD + Sbjct: 359 PVGNLRRISVSVLVNAVPVTIQSKTGPKTVMQPRDPKEIRDFTRIVQNAIGFDSARGDQV 418 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 + S+ F + + SF + L A + L +G LL+ L LR L Sbjct: 419 VVLSVPFSGTSAPSPKNIDQSFQEKL----APFVPLLEIFLGGLLLVIFSLLVLRPLLKA 474 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 K EV PP+ A + + Sbjct: 475 MVQWKPEVSPMQPAEGPPLGKAEV------------------------------AETVRS 504 Query: 527 SDLRLLHMIEINEERFAKILRKWARS 552 S + M + + + A ++R W + Sbjct: 505 SRDEVARMTQEDPGQAAIVVRSWLKE 530 >gi|319764515|ref|YP_004128452.1| flagellar m-ring protein flif [Alicycliphilus denitrificans BC] gi|330826731|ref|YP_004390034.1| flagellar M-ring protein FliF [Alicycliphilus denitrificans K601] gi|317119076|gb|ADV01565.1| flagellar M-ring protein FliF [Alicycliphilus denitrificans BC] gi|329312103|gb|AEB86518.1| flagellar M-ring protein FliF [Alicycliphilus denitrificans K601] Length = 564 Score = 367 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 124/536 (23%), Positives = 216/536 (40%), Gaps = 42/536 (7%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 F+ P Y L+ L D I L++ N+ ++ ++ G +I VP+ V R+ LA Sbjct: 49 FFYGRQPEYRVLFSGLNDKDGGAIVAQLAQMNVPYKYTEGGGAIMVPAERVHDVRLRLAT 108 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 QGLP S +G+EL + N FG+T F + + R LEGE+ R+IQ+++ + +ARVH+ +P Sbjct: 109 QGLPKGSV-TGFELME-TNRFGVTQFQERLNFQRGLEGELTRSIQALASVQSARVHLALP 166 Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 + F + +P+ASV++ + I HLVA++VP L V+VLD TGKLL Sbjct: 167 NQNGFFREQQKPSASVLLTLYPGRILDRTQIAGIVHLVASSVPELAPSAVSVLDDTGKLL 226 Query: 218 TA---NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 + + + L+ VQ I+ + I L +G +N ++ V AE++ + Sbjct: 227 SQSPDGGAGSGVDAQQLAYVQQIEQQYTRRILDLLEPVVGKNNVKAQVTAEVDFSQTEST 286 Query: 275 EIVY----DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT- 329 + PD+ RS ++ + P N P + T Sbjct: 287 SEQHRPNLSPDASAVRSQQIVESGAAPAAQPPTGVPGAVSNQPPQGSTAPINGANPPPTA 346 Query: 330 -----------DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA-D 377 K+E +NYE++ + T ++R++ AVVVN ++E G+ A + Sbjct: 347 ANAQQAGQQAGGKRESITNYEVDKTTRVTRAGAGAIKRVNAAVVVNYQSVSEAPGKPAVN 406 Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437 + + ++ +V G N RGD++ + + FL + +++ Sbjct: 407 KALSPEQIEQMTALVRETIGFNKERGDSVNLMNAPFLVEDTPSVDLPLWKQPEVVE---- 462 Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497 L +G + L + L K G ++ + Sbjct: 463 -----LARNLGWPVGISLAVALLLLGLVRPLLKARPRGVPAMGPQEGGGQLSAIAAEELE 517 Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 AL + Q Q R+ + N A IL+ W E Sbjct: 518 RPALPAPVQPQDLQPTAEQLRLEDA---------RKLARDNPVAVANILKTWVNGE 564 >gi|251772444|gb|EES53011.1| flagellar M-ring protein FliF [Leptospirillum ferrodiazotrophum] Length = 530 Score = 367 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 120/567 (21%), Positives = 211/567 (37%), Gaps = 53/567 (9%) Query: 1 MAILDQLLQFFKSGT-SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 M +L + ++ L + ++ + + L + S LY L +D Sbjct: 1 MDVLRKAMETISMWFGRLTMLQKVVAGILGAFLVGLLVFLGVVGKSADKSVLYSHLSPTD 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 IS L I + G+ I VP V R+ LA GLP +G+ +F+ S Sbjct: 61 SFEISQKLDRMGISYDTDAKGTEIRVPKKQVYMLRMQLADDGLPRH-HGAGFAIFNH-PS 118 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 T F+Q + ++AL+ E+ RTI+ +S I ARV IV+P F + ASV++R Sbjct: 119 LTTTDFVQHVQYLQALQSELDRTIEEMSPIALARVSIVLPRRSVFLRHQKGAHASVLVRL 178 Query: 180 INPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME---RNILGKSLSIV 234 + + HLVA +V L VTV+D+TG +L + L+ Sbjct: 179 KPGRSLSRAQVKGVVHLVANSVEGLTPDHVTVVDNTGTILNEKHPGLIPGELTKAQLAYQ 238 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 ++H + + L LG V A L+ + +YDP + ++ Sbjct: 239 AMVEHRLRNRVQSMLDQVLGEGQAVVRVNATLDFRRVEETRELYDPKGRALSEREKLREK 298 Query: 295 QRSETSQPESAVTVEQNMPH-----VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 P V N+P S P + KK++ +Y+++ Sbjct: 299 SSGTRIVPVGVPGVLSNVPGSNGKVASPPLGPKDGTQTKYSKKKDIEHYDVSHTMSHIVL 358 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSAD----QGKIDSYLAEINKIVSAATGINSRRGDT 405 + R+S++V+VN T V G++ + + + LA +IV A G ++ RGDT Sbjct: 359 PTGTVSRISVSVLVNGKTRT-VTGKTGETQIYEPRTPEELASFTRIVQNAIGFDATRGDT 417 Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465 + + S+ F ++ + L +G LLV L L+ + Sbjct: 418 VVVDSVPFAAAAPEGKTQEV-----RMAERLKPFMPLLEIFLGGLLVLVFSLFILKPILQ 472 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 K S+ P + + + + SS +D Sbjct: 473 SMMTK-------SLPMPVSGPAGLPIPDREEERETVSSSKED------------------ 507 Query: 526 QSDLRLLHMIEINEERFAKILRKWARS 552 + M + + + A++LR W + Sbjct: 508 -----IARMTQEDPSQAAQVLRLWLKE 529 >gi|77359741|ref|YP_339316.1| flagellar MS-ring protein [Pseudoalteromonas haloplanktis TAC125] gi|76874652|emb|CAI85873.1| flagellar biosynthesis; basal-body MS(membrane and supramembrane)-ring and collar protein [Pseudoalteromonas haloplanktis TAC125] Length = 571 Score = 367 bits (942), Expect = 3e-99, Method: Composition-based stats. Identities = 104/550 (18%), Positives = 225/550 (40%), Gaps = 25/550 (4%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 SG + R LI+A I + I +F+ + P L K+ ++ + L I Sbjct: 37 SGVDVLRQVTLIIALAICLAIAIFVI--IWARQPDMRPL-GKMPTEELIQTLDFLDAQKI 93 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 D+++ +G+ +SV S ++ + +GL SG ++ + FG++ ++ Sbjct: 94 DYQL--DGNVVSVDESEYQNIKLLMTREGL-DQGPTSGSDIIMQDMGFGVSQRLERERLK 150 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEA 190 E ++ARTI+ ++ I A+V + +P F + +P+A+V++ + ++ Sbjct: 151 HGREQQLARTIEELNNITRAKVLLAIPKENVFARREKKPSATVVLTLKRGRSLNSEEVDS 210 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNINKA 248 + ++A+AV L+ VTV D G+LL + K + + + E I+ Sbjct: 211 VVDMIASAVQGLEPARVTVTDQNGRLLNSGSQSSLSARSRKEYDLERKREQEYLEKIDSI 270 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP-----E 303 L +G+ N+ + V ++ + + + Y+PD RS ++ + Sbjct: 271 LIPIVGLSNYTAQVDLSMDFSSLEETQKRYNPDLPAVRSETTFEENNIGGLAVGIPGALS 330 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 + V ++P V+ + + + KE NYE++T + + R+S++V V Sbjct: 331 NQPPVNSDIPEVAGQGGAGSVTSPSRTHKEATRNYELDTTISHKRQQSGTIRRISVSVAV 390 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 + G + + L+ I +++ G + +RGD + + ++ F+ + S Sbjct: 391 DYLPTVGENGETTMTPRSVEALSNIRRLLQGGVGFDIQRGDALEVVTVPFVREAVDMSFE 450 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 V + D + V+ ALV +V L+ + L+RL D E ++ S Sbjct: 451 VPLWEQDWFMKIVRLVLAALVIIV---LIMAVVKPMLKRLIYPDST-LDEYDEDALSSGV 506 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 I L + + A + D +L + + + ++ E + Sbjct: 507 DIGDNSLDMLNKDFDSASVGFSSDGTLQLPDLHGDEDLLKA------VRALVANEPELSS 560 Query: 544 KILRKWARSE 553 ++++ W + Sbjct: 561 QVVKAWLTED 570 >gi|332296504|ref|YP_004438427.1| flagellar M-ring protein FliF [Thermodesulfobium narugense DSM 14796] gi|332179607|gb|AEE15296.1| flagellar M-ring protein FliF [Thermodesulfobium narugense DSM 14796] Length = 515 Score = 367 bits (941), Expect = 4e-99, Method: Composition-based stats. Identities = 145/562 (25%), Positives = 251/562 (44%), Gaps = 59/562 (10%) Query: 4 LDQLLQFFKSGTS----LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 +D++ F S L TR +L S + + +LF+ F+ P L+ L SD Sbjct: 1 MDRVRALFFSLRDRFLALSPTRRFLLLSGVSLVFILFVFGSLFLFKPQMAPLFTHLSSSD 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I L E I + + D+G++I VP V + R+ LAAQGLP S G+E+FDK N Sbjct: 61 GAAIVAKLKEQKIPYELKDSGTTILVPKDKVYELRLSLAAQGLP-EGSGVGFEIFDKNNL 119 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 F T F Q + VRAL+GE+ARTI I+G+ ARVHIV+P G F +ASVM+ Sbjct: 120 F-TTDFTQRVDYVRALQGELARTISQINGVEGARVHIVLPKTGVFVSQDIPASASVMLNL 178 Query: 180 INPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQ 235 K EAI LV+ AV L +VT++D+ G+LL+A+ + + + I + Sbjct: 179 KPGQSISEKETEAIAFLVSRAVEGLKPENVTIMDTRGELLSADLNFNKSGLSQREFDIKR 238 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSK 292 + E++ I L LG V AELN+ + ++++I Y P + + S +++ Sbjct: 239 KYESEVQRKIQTMLDTMLGPGKSVVRVSAELNLASSEVKKITYSPVVGQNGIVISSKVTT 298 Query: 293 DAQRSETSQPESA-VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 D +S+ + P++ TV Q +P + P P S ++ K EE +NY++N + + + Sbjct: 299 DTSKSQNTTPQTPSATVPQGIPSY---QTPAPTSSSSSRKTEEITNYDVNKQEEMIKNPS 355 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 ++RL+++V+V+ T L + VS A GI +RGD++ + +M Sbjct: 356 GDIKRLTVSVIVDGTPQT-------------VNLQALTAAVSNAAGILPQRGDSVDVQAM 402 Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 F + Q + I ++ V ++ + + LRR + Sbjct: 403 PF------DRTYQQKELQAMQQAQLMDTIKSIAMWVAIVIAAIIAIIFLRRTIASLKKSQ 456 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 + G + + + + + + +A + + + Sbjct: 457 EQRGAQILDATVGAEGIIHEKPLTPEELARKKARDE-----------------------V 493 Query: 532 LHMIEINEERFAKILRKWARSE 553 + + A +++ W R E Sbjct: 494 ERLAKEKPSEVANLIKTWLREE 515 >gi|225849149|ref|YP_002729313.1| flagellar M-ring protein FliF [Sulfurihydrogenibium azorense Az-Fu1] gi|225643430|gb|ACN98480.1| flagellar M-ring protein FliF [Sulfurihydrogenibium azorense Az-Fu1] Length = 534 Score = 367 bits (941), Expect = 4e-99, Method: Composition-based stats. Identities = 124/565 (21%), Positives = 241/565 (42%), Gaps = 46/565 (8%) Query: 1 MAI-LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVN--SPHYDNLYVKLEV 57 MA+ +Q+ Q + I++ +I + +++ ++ + Y LY L Sbjct: 1 MAVDFNQIKQKVGEFLKDKKNLKYIVSGLIGLFLVVILSIVLLKSFHKEDYAVLYSGLSP 60 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 D + ALS+ NI +++ NG+ I VP V AR+ LAA+GLP S G+E+F++ Sbjct: 61 DDAGNVLTALSQENIPYKLEGNGTIIMVPKDKVYDARLKLAAKGLP-SGKVVGFEIFEE- 118 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 G T F + + +RA+EGE+ RTI+ + ++ A+V+I MP F + ASV+I Sbjct: 119 PKLGTTQFQENVNYIRAVEGELTRTIKQLDAVMDAKVNISMPKDSLFVREDEEAKASVII 178 Query: 178 R--AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLS 232 + + +AI LV+ AVP L +VTV+D+ G++L+ + K++ Sbjct: 179 KLWPDKDLTKEQIKAIVFLVSHAVPKLKPENVTVVDNRGRVLSDLIDENVSEASGDKTVE 238 Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292 + + ++ ++E +I LA +G + EL ++ +YDPD S R K Sbjct: 239 LKRKLEKQLEKDIQSMLAKVVGPERVVVKASVELETGKVNQKDEIYDPDKVAVVSERKIK 298 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 +++ E + + N+P V + + + +K + +NY+++ I T + Sbjct: 299 ESETEEANTINAPPGTPTNVPPVMNTPI-FGGGGKKKEKSDITTNYDVSKSMIETQKPLF 357 Query: 353 KLERLSIAVVVNKG----RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 ++++S+ V+++ + + + + + L ++ +A G + RGD +T+ Sbjct: 358 VIKKVSVGVMIDGKYKEVKDKDGNVKLEFEPRSPQELQSYENLIKSAIGFDPNRGDQVTV 417 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 S+ F + Q N + +++ LL L + L Sbjct: 418 ISVPFESLETQKQEVKQA--------------NIIQYIIAGLLGLVLLGLVVFLLLKTKK 463 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 K+ + P S A + + L + I Sbjct: 464 KKQETIIAPLPSGEVPSSLATQLSKIYEEEKELQPEFEKI-----------------PEY 506 Query: 529 LRLLHMIEINEERFAKILRKWARSE 553 ++LL + E N A ++ KW + E Sbjct: 507 IKLLEIAEENPVLIANLISKWLKEE 531 >gi|32490809|ref|NP_871063.1| hypothetical protein WGLp060 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166015|dbj|BAC24206.1| fliF [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 569 Score = 366 bits (939), Expect = 7e-99, Method: Composition-based stats. Identities = 124/563 (22%), Positives = 234/563 (41%), Gaps = 58/563 (10%) Query: 22 ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81 +L S ++ I L + ++ S +Y LY + D I LS NI ++ S N Sbjct: 30 KYLLLSFGVIGIALSIVLITWLQSSNYQVLYTNISDQDSGDIISELSTLNIPYKFSKNNG 89 Query: 82 SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 SI VP + + R LA + LP S G+E+ D +SFG++ F + I RALEGEIAR Sbjct: 90 SIMVPEDKIYETRFLLAQKNLPKGGS-IGFEILD-NSSFGISQFNENINYQRALEGEIAR 147 Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAV 199 TI++I+ I +ARVHI +P F + +AS+ + +AIR LV+ V Sbjct: 148 TIETINSIKSARVHIAIPKSSVFIRDNKPSSASITLGLHAGRTLDKNEIQAIRWLVSGTV 207 Query: 200 PNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIVQAIQHEIEMNINKALAAFLGVDNF 258 PNL + ++ ++D+ GKLL + + L ++ I+ E I + L +G +N Sbjct: 208 PNLPVSNIVLVDNYGKLLAYPDNNNDDKNITQLQYIKDIELEYRRRIEEILIPIVGFNNV 267 Query: 259 RSAVVAELNMDTQQIREIVYDPDSKV----ERSIRLSKDAQRSETSQPESAVTVEQNMPH 314 ++ V A+++ + + P++ RS +++++ S+ E N P Sbjct: 268 KAEVTAQIDFTKTEQTSEKHKPNTNPNEMSIRSQQITENNNFSQ--VAEGVPGALSNQPS 325 Query: 315 VSD------------------------RKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 N +KE+ NYEI+ + Sbjct: 326 QVSSANIDEENEEIDKDAESEKEIDKKNNSSSKVEKPNNVQKEKIINYEIDRTLTHSKFS 385 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 L+RLS+AVV+NK + + + + + EI ++ G + R DT+ + + Sbjct: 386 TGILKRLSVAVVINKKEDQKGNQINFE----EKEMQEITSLIKEVMGYSEERNDTLDVVN 441 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 +F+ + F + + R I+ + +++ L+ ++ + Sbjct: 442 ANFVN---KKDEIFNIPFWENI-RIQNIFISLIKYILSFALMWLFINKFIKIWKTSEQ-- 495 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 + + + N ++ + + + N + I+ Y ++ S + Sbjct: 496 ------------NQLKNKIDKKSFQEKNNSIVNEKNNEINKKINEEENISIY-TENSIKK 542 Query: 531 LLHMIEINEERFAKILRKWARSE 553 L + + + AKI+ +W + E Sbjct: 543 LQEIADKQPKLVAKIISQWIKKE 565 >gi|291277395|ref|YP_003517167.1| flagellar M-ring protein [Helicobacter mustelae 12198] gi|290964589|emb|CBG40442.1| flagellar M-ring protein [Helicobacter mustelae 12198] Length = 566 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 135/571 (23%), Positives = 244/571 (42%), Gaps = 32/571 (5%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVN----SPHYDNLYVKLEV 57 A+ Q+L FF+ + + R++++ VI F N S Y L+ L Sbjct: 5 AVFSQILNFFQRFSK--KQRVIVIGGVIAAIAFFVFLIVFATNGKSRSDGYSVLFEGLTP 62 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 D I L + I ++I N +I +P V + RI LA+QG+P +S G+E+FD Sbjct: 63 GDNALIIQHLQQNQIPYKI-PNEETILIPRDKVYEQRIELASQGIPKNSK-VGFEIFDTK 120 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 + FG+T + +RA+EGE++RTI+S++ I A V I MP F PTASVM+ Sbjct: 121 D-FGMTDEEHRVKFLRAIEGELSRTIESLAPIQKANVLIAMPKSSVFVSQQTPPTASVML 179 Query: 178 RAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232 + SA+ I++LVAAA+PNL + +V ++ G+ L ++ + + L Sbjct: 180 GIRQGAALTSAQIFGIKNLVAAAIPNLTVENVKLVSQNGEPLGEDDEITSSKEVAAAQLK 239 Query: 233 IVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 Q I+ +E I L+ + G D + V A+ + ++ + +YDP++ V L Sbjct: 240 YKQNIERALEAKILNILSPVVGGEDKVVAKVNADFDFSQRKSLQEIYDPNNVVRSEQNLE 299 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + + ++ Q N+ V + + E +K + +NYE+ + Sbjct: 300 EKREGAQEKQIGGVPGAVSNIGPV--QGLDSQNGREKYEKTQNTTNYEVGKTVNEIKGEF 357 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQ-----GKIDSYLAEINKIVSAATGINSRRGDTI 406 L RLS AVVV+ + + ++ + +IN +V A G N +RGD + Sbjct: 358 GVLTRLSAAVVVDGRYKRVLNKEDGLEHMEFVPLSEAEMEKINLLVKQAIGYNQKRGDDV 417 Query: 407 TITSMDF-LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465 T+++ +F ++Q F F L + L +L+ L++ R++ Sbjct: 418 TVSNFEFNAKSQTFVPEGKMDRFASKLEMYLKPFTPLLKYLIVALIIFIF----YRKIIV 473 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 + E + A ++++ S + + N + Sbjct: 474 PFAERMLETQNNEEEKVESLFEATDD---EDEDVNKFSEMRKRVEEQLGIGKNFNEEEVR 530 Query: 526 QSDL--RLLHMIEINEERFAKILRKWARSEI 554 L + ++IE E A + + + EI Sbjct: 531 YDVLLEKTKNIIEKKPEEIAMLFKTLIKDEI 561 >gi|83955113|ref|ZP_00963769.1| flagellar FliF M-ring protein [Sulfitobacter sp. NAS-14.1] gi|83840442|gb|EAP79615.1| flagellar FliF M-ring protein [Sulfitobacter sp. NAS-14.1] Length = 564 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 143/563 (25%), Positives = 259/563 (46%), Gaps = 24/563 (4%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 + SLG+ ++++L + ++L + V P Y LY L ++ N I L+ Sbjct: 4 LIDNLKSLGKNKLMMLGGAGIGVVLLMILGIGAVTRPDYAPLYSNLSITSANSIEATLAN 63 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 A + +S++G+SISVP +AR+ LA G+P + G+ELFD+ + + SF+Q+I Sbjct: 64 AGFNAMVSEDGTSISVPRGDAVRARMVLAETGMPIDG-DPGWELFDESSGLAMNSFLQKI 122 Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS--VYKS 187 ++RA+EGE+AR+IQ++ GI +ARVH+V+PD F + P AS+++R + K Sbjct: 123 NKMRAMEGELARSIQTLDGISSARVHLVLPDREPFSRDAPAPRASIILRPESGRAVTRKQ 182 Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINK 247 A A+ +LVA+AV +LD+ VTVL ++G+ + A + + G S I+ + I Sbjct: 183 AVAVSNLVASAVADLDISRVTVLSASGETILAEGPDGSSQGGVQSAKAGIEDRLSQEIQN 242 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVT 307 L A +G N R V EL + I E YDPD +V RS + Q ++ V Sbjct: 243 ILTARVGAGNARVHVNVELTTQREVIVEQTYDPDQQVVRSTETKSEDQTG--TKEAGNVG 300 Query: 308 VEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367 VE N+P S ++ +E YEI + + R+S+AV+VN Sbjct: 301 VENNIPAALADGNGAGTSTRRSEA-DEIVQYEIGNTRREIVREAGDVRRMSVAVLVNGIY 359 Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVS 427 + + LA + ++V A G ++ RGD++++ SM F++ + + S Sbjct: 360 NVDGSD-VIYAERTPEELARLGELVKTAVGFDTTRGDSVSVDSMRFMDYSMDLGDPIDKS 418 Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRR--------------LHNIDDAKKGE 473 D L+ + +++ ++ L+ L+ G+ + R + A + Sbjct: 419 IGDELTDNVVSIVRGVLALLVVGLILVFGVRPMLRKFSEGDQLNSYEDPALTAEKAAEPA 478 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL---QSRINSYVSKQSDLR 530 P + + D+ L ++ DI + + I + K+ Sbjct: 479 ALTAEGQRPKLPGTTPAVADIAEDDDPLTVTDDDIEAAEVAEYVRKEGIRGNLHKKKIET 538 Query: 531 LLHMIEINEERFAKILRKWARSE 553 + + + + +++R W +E Sbjct: 539 IQQLADEKPQEVLRVIRSWLPAE 561 >gi|264676594|ref|YP_003276500.1| flagellar M-ring protein FliF [Comamonas testosteroni CNB-2] gi|299531261|ref|ZP_07044671.1| flagellar M-ring protein FliF [Comamonas testosteroni S44] gi|262207106|gb|ACY31204.1| flagellar M-ring protein FliF [Comamonas testosteroni CNB-2] gi|298720668|gb|EFI61615.1| flagellar M-ring protein FliF [Comamonas testosteroni S44] Length = 568 Score = 365 bits (936), Expect = 1e-98, Method: Composition-based stats. Identities = 118/572 (20%), Positives = 233/572 (40%), Gaps = 60/572 (10%) Query: 12 KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71 + +L R + L ++ + + +AA F P Y L+ + D I L++ N Sbjct: 26 QRWNALDRGQRLRWGALAALVAVGLVAAAVFYRQPDYKLLFSNVSDKDGGAIVAQLTQMN 85 Query: 72 IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131 + ++ S+ G +I +P+ V R+ LA QGLP S +G+EL + + FG+T F + + Sbjct: 86 VPYKYSEGGGAILIPADRVHDVRLKLATQGLPKGSV-TGFELME-NSKFGITQFQERLNF 143 Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAE 189 R LEGE+ R+I +++ + +ARVH+ +P+ F + +P+ASV++ + Sbjct: 144 QRGLEGELTRSILALNAVQSARVHLALPNQNGFFREQQKPSASVLLSLHPGRMLDRAQIA 203 Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQAIQHEIEMNINK 247 I HLVA++VP ++ V+V+D TGKLL+ + + + Q ++ + I Sbjct: 204 GIVHLVASSVPEMEPAAVSVVDDTGKLLSQSPDGNAGGVDMQQFLYTQQVEQQYVRRILD 263 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP----DSKVERSIRLSKDAQRSETSQPE 303 L +G +N ++ V AEL+ + + P D RS ++ + + P Sbjct: 264 ILEPVVGKNNVKAQVSAELDFSQTESTSEQHRPNQSADGGAVRSQQVMETNGEKTATPPT 323 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLE-----------NTDKKEEQSNYEINTKSIATTHDNY 352 N P + + +K+E +NYE++ T Sbjct: 324 GVPGATSNQPPQNSTAPINGANPAPQAAGAGQGNGQGNKRESITNYEVDKTVRVTRGSTG 383 Query: 353 KLERLSIAVVVNKG-----------RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR 401 ++RL+ AVVVN T S + ++ +V G ++ Sbjct: 384 TVKRLTAAVVVNAPLAAAAGTDAATAATAAAVSSGLRPLTAQQQEQLLTLVRETVGYSAD 443 Query: 402 RGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461 RGD++ + S F+++ + +I + + + + L G L++ L L+ Sbjct: 444 RGDSVNLVSAPFMDSGAAPAELPMWKDPEIQAMAKSLGVPIALALFGALVLLGLVRPLLK 503 Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521 + + + +++ D AL + +++ Sbjct: 504 GRNTGPGGQLNAIEAEAL-----------------DRPALPAPAKELSPTKE-------- 538 Query: 522 YVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ + H+ + N A I++ W E Sbjct: 539 ---QERLDQARHLAKQNPIAVANIVKTWINGE 567 >gi|88813200|ref|ZP_01128440.1| flagellar M-ring protein [Nitrococcus mobilis Nb-231] gi|88789522|gb|EAR20649.1| flagellar M-ring protein [Nitrococcus mobilis Nb-231] Length = 580 Score = 365 bits (936), Expect = 2e-98, Method: Composition-based stats. Identities = 137/563 (24%), Positives = 233/563 (41%), Gaps = 52/563 (9%) Query: 21 RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80 R + L + + + +A + P Y LY L D + ++ AL ANI R+ N Sbjct: 42 RQMGLIIGLALAVAAGLALFMWAQEPTYRALYANLPTQDASAVADALQTANIPHRLDTNS 101 Query: 81 SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140 +I VP+ + +AR+ LA QGLP + G+E + FG + FM+ RALE E+A Sbjct: 102 GAILVPAQRLSEARLKLAGQGLPHTGG-VGFESLRQEQGFGTSQFMETARFQRALETELA 160 Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAA 198 RTI ++ + +RVH+ +P+ F + P+A+V I V S + AI HLVA+A Sbjct: 161 RTIDALDPVARSRVHLAIPERSVFVRDRKTPSAAVSIGLYPGRVLSSGQVLAIAHLVASA 220 Query: 199 VPNLDMGDVTVLDSTGKLLT--ANEMER-NILGKSLSIVQAIQHEIEMNINKALAAFLGV 255 VP + VT++D G+LL+ ANE E N + L+ ++ I L +G Sbjct: 221 VPAMTASAVTIVDQRGRLLSRVANEGEGLNATVQQLAFRHRVEEAYARRIEDLLTPIVGA 280 Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD----------AQRSETSQPESA 305 + ++ V A ++ Q+ E +Y P+ V RS + K+ + ++QP Sbjct: 281 GHVKAQVNARVDFSAQERTEELYQPEQSVVRSEQSMKERTERSQKAIGVPGALSNQPPGT 340 Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKE-------EQSNYEINTKSIATTHDNYKLERLS 358 T++ P S + V + T E NYEI+ + RLS Sbjct: 341 GTLQPAQPGKSGKPVDQQEAANQTSAPELVDSRISHTRNYEISKTIHHVRTPRGAITRLS 400 Query: 359 IAVVVNKGRL---TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 +AV++++ + T+ ++ Q LAE+ ++V G ++ RGDTI + S F Sbjct: 401 VAVLLDRPAIAAKTKDKTQAPPQVDPQVELAELTELVKQVVGFDADRGDTINLISSPFQP 460 Query: 416 NQLFNSGTVQVSFMDILSR---HFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 + + +S + LV ++ + GL R D A + Sbjct: 461 PEEAPPAHTPLWQQPWVSEGGKLLLASLLGLVLILAVVRPLVHGLLGRDRSERPDSAAQA 520 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 ++ G + A TG + S D +R++ Sbjct: 521 QIHG----GADADADAALTGPAEPKRLGTVSDYNDRLQIARDV----------------- 559 Query: 533 HMIEINEERFAKILRKWARSEIE 555 + A +++ W E E Sbjct: 560 --VGKEPAVAANVMKHWLAQENE 580 >gi|224418248|ref|ZP_03656254.1| flagellar MS-ring protein [Helicobacter canadensis MIT 98-5491] gi|253827573|ref|ZP_04870458.1| flagellar M-ring protein [Helicobacter canadensis MIT 98-5491] gi|313141781|ref|ZP_07803974.1| flagellar basal-body m-ring protein flif [Helicobacter canadensis MIT 98-5491] gi|253510979|gb|EES89638.1| flagellar M-ring protein [Helicobacter canadensis MIT 98-5491] gi|313130812|gb|EFR48429.1| flagellar basal-body m-ring protein flif [Helicobacter canadensis MIT 98-5491] Length = 576 Score = 364 bits (935), Expect = 2e-98, Method: Composition-based stats. Identities = 118/572 (20%), Positives = 239/572 (41%), Gaps = 32/572 (5%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVN--------SPHYDNLYV 53 A+ +Q+ +K L + + +++ + I+ + + + P Y L+ Sbjct: 5 ALFEQIRNLYKR---LNKKQKIVILATIVAIVAFISGLIVWNSMNNKAGVMYPGYAVLFE 61 Query: 54 KLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYEL 113 + D I L + I ++I + ++I +P +V + R+ LA+ G+P SS G+E+ Sbjct: 62 GVSPEDGALIIQQLQQDKIPYQIPKD-NTILIPQELVYEQRMKLASNGIPKSSK-VGFEI 119 Query: 114 FDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTA 173 FD FG T F Q + +RA+EGE+ARTI+S+S I A VHI P+ F PTA Sbjct: 120 FD-TQDFGATDFDQRVKYLRAIEGELARTIESLSPIQKATVHIAQPEKSVFVSEQTPPTA 178 Query: 174 SVMI--RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILG 228 SV++ + K I+++V++A+PNL + +V V++ G+ L+ + R + Sbjct: 179 SVVLAFKPGQTLTPKQISGIKNIVSSAIPNLTIENVEVVNEKGEPLSELDELGGARELAA 238 Query: 229 KSLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS 287 L + +E I LA G + + V AE + ++ + YDP++ V Sbjct: 239 AQLRYKNNFEQSLEEKIINILAPIAGGREGVVAKVTAEFDFAQKESTQEYYDPNNVVRSE 298 Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 L + + S+ + V N+ V + + E +K + +NYE++ Sbjct: 299 QNLEEKREGSKPKEIGGVPGVVSNIGPVQGLED--ENNRERYEKSQTTTNYEVSKTISNI 356 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQ----GKIDSYLAEINKIVSAATGINSRRG 403 + + RLS AVVV+ ++ +Q +S + +I+ +V A G N +RG Sbjct: 357 KGEFATIRRLSAAVVVDGKYQKQIDENGIEQLQYTALNESEMQQISALVRQAIGFNEQRG 416 Query: 404 DTITITSMDFL-ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 D +++++ ++ F + T F++ + L +++ +++ + Sbjct: 417 DEVSVSNFQLNGQDSGFKARTPLERFLETAQNLLTPFMPLLKYVIVGIILFLFYKKVILP 476 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 K + + G N+ + + N + + Sbjct: 477 FSERMLEAKADEEEEIESLLKVDDEEEENGDKLNE--VRRRIEDQLGFGNGNNEDEVKYE 534 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 V + ++ + + A + + E+ Sbjct: 535 VLLE---KIREVAQEKPTELANLFQTLVHDEL 563 >gi|109947514|ref|YP_664742.1| flagellar MS-ring protein [Helicobacter acinonychis str. Sheeba] gi|109714735|emb|CAJ99743.1| flagellar basal-body M-ring protein [Helicobacter acinonychis str. Sheeba] Length = 567 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 123/546 (22%), Positives = 234/546 (42%), Gaps = 25/546 (4%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVN---SPHYDNLYVKLEVSD 59 +L +++ FF + ++ + +I I+ + F Y L+ L+ SD Sbjct: 6 LLQRIVDFFIKLNKKQKIALIAMGVLITALIVFLLLYPFKEKGYVQGGYGVLFEGLDPSD 65 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I L + I +++S + +I +P V + RI LA+QG+P +S G+E+FD + Sbjct: 66 NALILQYLQQNQIPYKVSKD-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFDSKD- 122 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 FG T F Q + +RA+EGE++RTI+S++ I+ A VHI +P F P+ASVM++ Sbjct: 123 FGATDFDQNVKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLKL 182 Query: 180 INPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLSIV 234 I++L+AAAVP L + +V +++ G+ L + + + + L Sbjct: 183 KPDMRLSPTQILGIKNLIAAAVPKLTIENVKIVNENGEPLGEGDILENSKELALEQLHYK 242 Query: 235 QAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293 Q ++ +E I LA +G N + V AE + ++ + +DP++ V L + Sbjct: 243 QNFENILESKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEK 302 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 + + Q V N+ V K + E +K + +NYE+ + Sbjct: 303 KEGAPKKQVGGVPGVVSNIGPVQGLKDNKDQ--EKYEKSQNTTNYEVGKTISEIKGEFGT 360 Query: 354 LERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 L RL+ AVVV+ L + + D L +IN +V A G N RGD + +++ Sbjct: 361 LVRLNAAVVVDGKYKIALKDGTNALEYEPLSDEALKKINALVKQAIGYNQNRGDDVAVSN 420 Query: 411 MDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RLHN 465 +F ++ T M + + + +L+ +++ + R+ Sbjct: 421 FEFNPIIPTIDNATFGEKIMHKTQKILGSFTPLIKYLLVFVVLFIFYKKVIVPFSERMLE 480 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRINSY 522 + + EV G + D + L+++ + + +I Sbjct: 481 VVPDEDKEVKSMFEEMDEEEDEMNKLGDLKKKVEDQLGLNATFSEEEVRYEIILEKIRGT 540 Query: 523 VSKQSD 528 + ++ D Sbjct: 541 LKERPD 546 >gi|315497627|ref|YP_004086431.1| flagellar m-ring protein flif [Asticcacaulis excentricus CB 48] gi|315415639|gb|ADU12280.1| flagellar M-ring protein FliF [Asticcacaulis excentricus CB 48] Length = 561 Score = 364 bits (934), Expect = 3e-98, Method: Composition-based stats. Identities = 153/570 (26%), Positives = 251/570 (44%), Gaps = 31/570 (5%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 +D L QF G +R+ ++ V + + A + LY L++ + + I Sbjct: 1 MDFLKQF-------GLSRLAVIIGVSIGVAAVLAAIALNMTGKPQALLYSNLDLKEASEI 53 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + AL +A I ++ +GS++ V VG+ R+ LA++GLP++ S GYELFDK + G T Sbjct: 54 TAALDQAGIKYQAKGDGSTLMVDRDTVGETRLMLASKGLPTAGS-VGYELFDKAPALGQT 112 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 F+Q + RALEGE+ARTI ++ GI +ARVH+VMP F++ A PTASV++ N Sbjct: 113 EFVQNLNNQRALEGELARTIATLKGINSARVHLVMPKRELFQEEAAAPTASVVVGLSNTE 172 Query: 184 VY-KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK-SLSIVQAIQHEI 241 + + AIR+LVA AVPNL VT++D +LL A + N+LG I+ + Sbjct: 173 LSGEQVRAIRNLVAGAVPNLKANAVTLVDDKNRLLAAGGEDDNLLGAGGAERKTEIEETL 232 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + + +G R V A++++++ + YDPD +V RS R S + Sbjct: 233 RKRVKDIVEGVVGPGAARVTVTADIDLNSLTREQTQYDPDGQVVRSTRTDTSTDSSTDNA 292 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 VT + N+P + + ++ E +NYEI+ +++L++AV Sbjct: 293 NNGTVTAQANIPGGA-AAPGQGTTGNQSETTGELTNYEISNTKTTEVIAPGAIKKLAVAV 351 Query: 362 VVNKGRLTEVLGR--SADQGKIDSYLAEINKIVSAATGINSR-------RGDTITITSMD 412 VV+ G+ + + +I ++V AA G + R D + +T++ Sbjct: 352 VVDGTWTPAADGKSPPTYAPRSAQDMQQIEELVRAAIGYTDQTATNPNGRKDELKVTNIR 411 Query: 413 FLENQLFNSG-TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 F + G T D T I L+ LV LLV F L + N + A Sbjct: 412 FARDAAGLGGTTASAGMFDFTKDDIVTAIQWLILLVVALLVLFFVARPLLKFVN-NGAVP 470 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSH---------SRNLQSRINSY 522 G ++ V + + + SR ++I Sbjct: 471 APGGVPALAGAGGAVQMVMGADGVPVAVPAGALDYQGVPGTGLALSPVDSRIDIAKIEGQ 530 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARS 552 V S R+ +E + E ILR W Sbjct: 531 VKASSVKRVSEFVERHPEESISILRSWLHD 560 >gi|319790420|ref|YP_004152053.1| flagellar M-ring protein FliF [Thermovibrio ammonificans HB-1] gi|317114922|gb|ADU97412.1| flagellar M-ring protein FliF [Thermovibrio ammonificans HB-1] Length = 532 Score = 363 bits (932), Expect = 4e-98, Method: Composition-based stats. Identities = 126/561 (22%), Positives = 237/561 (42%), Gaps = 47/561 (8%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + D+L F + + R +L+L ++ LV + + R + N Y LY L D Sbjct: 6 LSDKLTAFLREKAN-PRNIVLVLGALTLVVFLSLVLVRSYSNQ-EYAVLYTHLSPDDAGE 63 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L + I +++ +GS I VP V + R+ LAA+GLP G+E+FDK G+ Sbjct: 64 ILTVLQQEKIPYKVEGDGSIILVPKDKVYEVRLQLAAKGLP-HGKVVGFEIFDK-PKLGI 121 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T F Q + +RALEGE+ RTI+ + + +A+V+I +P F + P ASV++ Sbjct: 122 TQFQQNVEYLRALEGELERTIEQLDAVRSAKVNIALPKDSIFVRPEQEPKASVLVDLWPG 181 Query: 183 SVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQA 236 + +AI LV+ AVP L +VTV+D+ G++L+ ++ + K L I + Sbjct: 182 RDLTPEQVKAIIFLVSHAVPGLKPENVTVVDTRGRVLSDLVESDNSTYAVSSKELKIKRQ 241 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 ++ +IE + L+ LG E+ + ++ +YDPD S R ++ + Sbjct: 242 LERDIERKVESMLSQVLGGGKVVVRASVEVETGKVETQKEIYDPDMTAVVSQRKVQEKEV 301 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 + QP+ A N+P V + + +KK+ +NY+++ + ++++R Sbjct: 302 ATQKQPQGAPGTTTNVPPVVNFGPNAK--VVQKEKKDVTTNYDVSKTIERSVTPVFRIKR 359 Query: 357 LSIAVVVNKGRLTEVLGRSADQ----GKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 +++ V+V+ + + + + +IV + G + +RGD +T+ S+ Sbjct: 360 ITVGVLVDGRYEKVKGPKGTVEYKFVPRSPQEIKTYEEIVKSVIGYDPKRGDRVTVASVP 419 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F L + + Sbjct: 420 FETQLLAGNKPKEEKGFPWQYAA----------------------------GVGALVAVL 451 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 L P + A GL P + +A S ++ + + IN S L+++ Sbjct: 452 LGLLLMKLLKKPKAEAPPAGLQPGETLA--QSLEEGLAARKEEIEEIN-LESDPIYLKIV 508 Query: 533 HMIEINEERFAKILRKWARSE 553 + + + + ++ KW R E Sbjct: 509 EVAKDYPDLISNVITKWMREE 529 >gi|95929849|ref|ZP_01312590.1| flagellar M-ring protein FliF [Desulfuromonas acetoxidans DSM 684] gi|95134145|gb|EAT15803.1| flagellar M-ring protein FliF [Desulfuromonas acetoxidans DSM 684] Length = 521 Score = 363 bits (931), Expect = 5e-98, Method: Composition-based stats. Identities = 137/553 (24%), Positives = 235/553 (42%), Gaps = 46/553 (8%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 F + +R + L +V L + LF Y L+ L +D + I L Sbjct: 8 NMFATIKGWPLSRKISLIAVTLFSLTLFALIIMQARHTDYQLLFANLSENDASSIVTWLK 67 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 E + + + G S+ VP+ V + R+ LA GLP G+E+FDK S G+T F+Q+ Sbjct: 68 EQKVPYELRSGGQSVYVPADRVYETRLDLAGAGLPQGGG-VGFEIFDK-QSLGITDFVQK 125 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-- 186 + +RA++GE++RT+ S+S + AARVH+ +P F+ R TAS++++ K Sbjct: 126 VNYLRAMQGELSRTVASLSPVSAARVHLALPQKRLFKSEQQRVTASIIVKLAPGRTLKEA 185 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME---RNILGKSLSIVQAIQHEIEM 243 + I +LVA +V LD VTV+D+ GK+L+ E + L +A++ ++E Sbjct: 186 QVQGIVNLVAGSVEGLDSDYVTVVDAAGKVLSKKPDEGLSGPMTPGMLEYQRAVERQMES 245 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 L LG+ N V A L+ + E +YDP S V RS +L + + S T Sbjct: 246 RAQAMLDRALGMANSLVKVTAVLDFAQVEKLEELYDPKSAVPRSEQLQEQKEGSST-VGG 304 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 V+ N+ + + E +NYEI+ T ++ LS++V+V Sbjct: 305 GVPGVQANLGPGVNSAGGGGSNST---SSAETTNYEISKVVNRTVAPVGTIKHLSVSVLV 361 Query: 364 -NKGRLTEVLG-RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 +K E G A + + L I K+V +A GI+ RGD + + SM F + Sbjct: 362 ADKMTDGEEDGAEPALTPRSEQELRTIEKMVQSALGIDKTRGDQLNVVSMPFADEFYEQP 421 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 + S D L + + L L ++ L AL+ L + + + Sbjct: 422 QLPEPSVTDQLYVYMPLLKYVLAGLGALVMYLMLVRPALKTLKSEATVQHFK-------- 473 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 T + + A S+ ++ + + Q+ + + S Sbjct: 474 --------TVKELEEEMAAGRSATVELDATEQMRQNILKAEHSPS--------------- 510 Query: 542 FAKILRKWARSEI 554 +++R W E Sbjct: 511 --QVIRTWMTDEE 521 >gi|260429390|ref|ZP_05783367.1| flagellar M-ring protein FliF [Citreicella sp. SE45] gi|260420013|gb|EEX13266.1| flagellar M-ring protein FliF [Citreicella sp. SE45] Length = 541 Score = 363 bits (931), Expect = 6e-98, Method: Composition-based stats. Identities = 140/559 (25%), Positives = 243/559 (43%), Gaps = 27/559 (4%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + QL Q ++ LG R +I+ + + I+ + +P LY LE + Sbjct: 1 MQQLAQIWEG---LGARRRIIVLAATVGVILAVLTMARMAGTPSMALLYAGLENGAAGEV 57 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 AL + + + + G +I VP R+ LA++GLP++S N GYEL D ++ FG T Sbjct: 58 VEALEQRGVVYEVR--GGAIFVPEMERDALRMTLASEGLPANS-NKGYELLDGLSGFGTT 114 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP- 182 S M + RA EGE+ARTI + + +ARVHI F++ +P+AS+ + + Sbjct: 115 SQMFDAAYWRAKEGELARTIVASPYVASARVHIANSSANPFQRD-VQPSASISVTSTGEV 173 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242 A A+++LVA+AVP L V V+D G L+ A + + G + + + Sbjct: 174 LSPAQARALKYLVASAVPGLVPEQVAVIDGKGGLIGAEDEVGS--GPTAEDKADL---LR 228 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 + + + A +G+ N V + +++ IR+ +DP+++V S + + S+ + Sbjct: 229 DRVQRLVDARVGLGNAVVEVSVDTVTESETIRQRQFDPENRVVISTDTEEQSSTSQDT-G 287 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 VTV N+P S N + E+ NYE++ T ++RL++AV+ Sbjct: 288 SGNVTVASNLPDGQAGGGDSSSSQSNETR--ERVNYEVSETMREVTRVPGAIKRLTVAVL 345 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 VN T G D+ L + +V++A G +RGD ITI S+ F + +G Sbjct: 346 VNGTYDTAADGTQLFVPLPDNELTALRDLVASAVGFEEQRGDEITIRSLPFERPEGLGTG 405 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482 ++ + + + V L+ LGL +R + A+ G + Sbjct: 406 PIEPDWFALQLDPMMLIQ----MAVLALVALILGLFVVRPILT-GSARAALPGAEGGALA 460 Query: 483 PPISSAVTTGLMPNDNIA------LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536 P V G + + + L S +S V++ RL +IE Sbjct: 461 LPSGGTVLDGEIDDGDEGFAPLADLGSGEGFGGGFGGMGMVDFDSPVAEDPVDRLRGLIE 520 Query: 537 INEERFAKILRKWARSEIE 555 + +ILR W + E Sbjct: 521 QRKSETVEILRSWLDEKEE 539 >gi|213425006|ref|ZP_03357756.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 429 Score = 363 bits (931), Expect = 6e-98, Method: Composition-based stats. Identities = 105/386 (27%), Positives = 175/386 (45%), Gaps = 33/386 (8%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 44 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 103 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 104 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 161 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + A+ HLV++AV L G+VT++D +G LLT Sbjct: 162 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 221 Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 +N R++ L ++ I+ I L+ +G N + V A+L+ ++ E Sbjct: 222 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 281 Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------------HVSDRKV 320 Y P+ ++ S+ SE P N P + + Sbjct: 282 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 341 Query: 321 PLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373 P + N++ + E SNYE++ T + +ERLS+AVVVN L + Sbjct: 342 PQTSTSTNSNNAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP 401 Query: 374 RSADQGKIDSYLAEINKIVSAATGIN 399 + +I + A G + Sbjct: 402 L----PLTADQMKQIEDLTREAMGFS 423 >gi|208434294|ref|YP_002265960.1| flagellar basal-body M-ring protein [Helicobacter pylori G27] gi|208432223|gb|ACI27094.1| flagellar basal-body M-ring protein [Helicobacter pylori G27] Length = 567 Score = 362 bits (930), Expect = 7e-98, Method: Composition-based stats. Identities = 123/548 (22%), Positives = 239/548 (43%), Gaps = 29/548 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEV 57 +L +++ FF + +I ++A+ +L+ +L + Y L+ L+ Sbjct: 6 LLQRIVDFFIKLNK--KQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEGLDP 63 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 SD I L + I +++S + +I +P V + RI LA+QG+P +S G+E+FD Sbjct: 64 SDNALILQHLQQNQIPYKVSRD-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFDTK 121 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 + FG T F Q I +RA+EGE++RTI+S++ I+ A VHI +P F P+ASVM+ Sbjct: 122 D-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180 Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232 + I++L+AAAVP L + +V +++ G+ + + + + + L Sbjct: 181 KLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLH 240 Query: 233 IVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 Q ++ +E I LA +G N + V AE + ++ + +DP++ V L Sbjct: 241 YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE 300 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + + + Q V N+ V K + E +K + +NYE+ + Sbjct: 301 EKKEGTSKKQVGGVPGVVSNIGPVQGLKD--NKEPEKYEKSQNTTNYEVGKTISEIKGEF 358 Query: 352 YKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 L RL+ AVVV+ L + + D L +IN +V A G N RGD + + Sbjct: 359 GTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLQKINALVKQAIGYNQNRGDDVAV 418 Query: 409 TSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463 ++ +F + ++ T+ M + + + +++ +++ + R+ Sbjct: 419 SNFEFNPMAPMIDNATLSEKIMHKTQKILGSFTPLIKYVLVFIVLFIFYKKVIVPFSERM 478 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRIN 520 + + EV G + D + L+++ + + +I Sbjct: 479 LEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIILEKIR 538 Query: 521 SYVSKQSD 528 + ++ D Sbjct: 539 GTLKERPD 546 >gi|212634367|ref|YP_002310892.1| flagellar MS-ring protein [Shewanella piezotolerans WP3] gi|212555851|gb|ACJ28305.1| Flagellar FliF M-ring protein [Shewanella piezotolerans WP3] Length = 531 Score = 362 bits (930), Expect = 7e-98, Method: Composition-based stats. Identities = 108/530 (20%), Positives = 216/530 (40%), Gaps = 32/530 (6%) Query: 37 MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIH 96 + + P Y L ++ ++ ++ L + I ++I G + VP ++ Sbjct: 19 VFVMIWAQEPEYRPL-GQMSTQEMVQVLDELDKNKIKYQIQ--GDVVKVPEDKYQDVKMM 75 Query: 97 LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHI 156 L+ GL +++N Y K + FG++ M++ + E +AR I+ + + A+V + Sbjct: 76 LSRAGLDQAAANDDY--LSKDSGFGVSQRMEQARLKHSQEQNLARAIEELKSVSRAKVIL 133 Query: 157 VMPDMGSFRKIGARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 +P F + ++P+A+V++ + + ++I +VA+AV NL+ VTV DS G+ Sbjct: 134 ALPKENVFARNRSKPSATVVVNTRRGGLGQEEVDSIVDIVASAVHNLEPNKVTVTDSNGR 193 Query: 216 LLTANEME--RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI 273 LL + + I + L IVQ + E + L LG +NF S V ++ + Sbjct: 194 LLNSGSQDGVSAIARRELEIVQQKESEYRNKVESILMPILGPENFTSQVDVSMDFTAVEQ 253 Query: 274 REIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDR-----KVPLPRSLEN 328 Y+PD RS + ++ T+ N P ++ Sbjct: 254 TAKRYNPDLPALRSEMVVENNSNGGTT--GGIPGALSNQPPMNSDIPQEVGTETTSVSSG 311 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAE 387 + KE N+E++T T L R+S++V V+ G + + + LA Sbjct: 312 SSHKEATRNFELDTTISHTRQQIGTLRRVSVSVAVDFKNAPAAEDGSVSRVPRTEQELAN 371 Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447 I +++ A G N++RGD I + ++ F++ + ++ ++ R + LV L Sbjct: 372 IRRLLEGAVGFNTQRGDMIEVVTVPFMDQLIEDAPAPEMWEQPWFWRAVKLGLGTLVALA 431 Query: 448 GTLLVTFLGLHALRRLHNIDDAKKGEVG--GKSILSPPPISSAVTTGLM--PNDNIALDS 503 +V F+ L+R+ D AK E G + +A T G++ P + Sbjct: 432 ---IVMFIISPMLKRIVYPDSAKLPEEPKMGDELAEIEDQYAADTLGMLERPEAEYSYAD 488 Query: 504 SNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + I + + ++ E ++++ W + Sbjct: 489 DGSILIPDLHKDDDMIKA---------IRAIVANEPELSTQVVKNWLIED 529 >gi|260779317|ref|ZP_05888209.1| flagellar M-ring protein FliF [Vibrio coralliilyticus ATCC BAA-450] gi|260605481|gb|EEX31776.1| flagellar M-ring protein FliF [Vibrio coralliilyticus ATCC BAA-450] Length = 556 Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 122/564 (21%), Positives = 235/564 (41%), Gaps = 31/564 (5%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 +L Q + + R L+L++V+ + + + ++ Y LY + E D I Sbjct: 6 HKLKQLWSNS-----QRNLVLSAVLAAIVAAIIVVALWSSTQSYRPLYSQQERFDTGEIV 60 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L I++R+ + + VP V + R+ LAA+G+ + +G + + +S G + Sbjct: 61 SVLESEGINYRLQEQNGQVLVPEGEVARIRMLLAAKGV-KAKLPTGLDSLKEDSSLGTSQ 119 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAINPS 183 FM+ LEGE+ RTI S++ + ARVH+ +P F + + P+ASVM+ Sbjct: 120 FMETARYRHGLEGELIRTIISLNAVSNARVHLAIPRQTLFVRQNSEAPSASVMLELKPGE 179 Query: 184 VYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIVQAIQ 238 K EAI +L+ +V + V+V+D G+LL+A+ K L + ++ Sbjct: 180 DLKPEQVEAIINLIVGSVTGMKPEQVSVIDQYGRLLSADVASAEAGKVNAKYLEYQKNVE 239 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 +I + L +G NFR V A+L+ + + + D ++ + R+ + + Sbjct: 240 KQIIQRASDMLTPIVGPSNFRVQVAADLDFSQVEETQEILD-NTPIVRNEHTISNNSIDQ 298 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 + N P V+ +VP S + E Y + + T + ++E+LS Sbjct: 299 IAL--GVPGTLSNQPPVT-GEVPTQDSQNTNARSEVNRQYAVGSSVRRTHYQQGQIEKLS 355 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 ++V++N+ +AD+ A+I+ +V+ A GI + RGD++++ S F + Sbjct: 356 VSVLLNEAAAPNGTAWTADEK------AQISTMVTDAVGIAADRGDSLSLMSFSFTPLAI 409 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 T+ + + VI ++ + + F L L D + E+ Sbjct: 410 EAPPTIPWWQDPTIQQPMRYVIGGML----GMAMIFFVLRPLIMHLTGADMRSQELEFAE 465 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL----LHM 534 P + T + ++ + S L + S L + L + Sbjct: 466 PQEEPIFDNLQTREEREREEALNRKLSEKGIAASSGLDVGNDMLPPAGSPLEIQLKHLQL 525 Query: 535 IE-INEERFAKILRKWARSEIEDR 557 I ER A++L++W R Sbjct: 526 IANEEPERVAEVLKQWVNVNEHSR 549 >gi|15644979|ref|NP_207149.1| flagellar MS-ring protein [Helicobacter pylori 26695] gi|2313452|gb|AAD07419.1| flagellar basal-body M-ring protein (fliF) [Helicobacter pylori 26695] Length = 567 Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 124/548 (22%), Positives = 240/548 (43%), Gaps = 29/548 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEV 57 +L +++ FF + +I ++A+ +L+ +L + Y L+ L+ Sbjct: 6 LLQRIVDFFIKLNK--KQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEGLDS 63 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 SD I L + I +++S + +I +P V + RI LA+QG+P +S G+E+FD Sbjct: 64 SDNALILQHLQQNQIPYKVSKD-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFDTK 121 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 + FG T F Q I +RA+EGE++RTI+S++ I+ A VHI +P F P+ASVM+ Sbjct: 122 D-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180 Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232 + I++L+AAAVP L + +V +++ G+ + + + + + L Sbjct: 181 KLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLH 240 Query: 233 IVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 Q ++ +E I LA +G N + V AE + ++ + +DP++ V L Sbjct: 241 YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE 300 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + + + Q V N+ V K + E +K + +NYE+ + Sbjct: 301 EKKEGASKKQVGGVPGVVSNIGPVQGLKD--NKEPEKYEKSQNTTNYEVGKTISEIKGEF 358 Query: 352 YKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 L RL+ AVVV+ L + + + D L +IN +V A G N RGD + + Sbjct: 359 GTLVRLNAAVVVDGKYKIALKDGVNTLEYEPLSDESLQKINALVKQAIGYNQNRGDDVAV 418 Query: 409 TSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463 ++ +F + ++ T+ M + + + +++ +++ + R+ Sbjct: 419 SNFEFNPMAPVIDNATLSEKIMHKTQKILGSFTPLIKYILVFIVLFIFYKKVIVPFSERM 478 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRIN 520 + + EV G + D + L++S + + +I Sbjct: 479 LEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNASFSEEEVRYEIILEKIR 538 Query: 521 SYVSKQSD 528 + ++ D Sbjct: 539 GTLKERPD 546 >gi|163781742|ref|ZP_02176742.1| Flagellar M-ring protein [Hydrogenivirga sp. 128-5-R1-1] gi|159882962|gb|EDP76466.1| Flagellar M-ring protein [Hydrogenivirga sp. 128-5-R1-1] Length = 502 Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 150/558 (26%), Positives = 251/558 (44%), Gaps = 61/558 (10%) Query: 1 MAILDQ-LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 MA L+ L + +++ ++ ++ + V L + + P Y LY L D Sbjct: 1 MADLNSTLKNIQERFSAMPLSQKALVVGLPAVIFSLLVTVLIYSLQPDYAVLYSNLSPED 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 +N + L + + +++ +G +I VP + V R+ LAA+G+P+ GYELFDK ++ Sbjct: 61 MNAVLTELDKEGVKYKVGRDGRTILVPENKVRDVRLKLAAKGIPNKGV-IGYELFDK-ST 118 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 GL+ F Q + RA+EGE+ RTI I ARVHI +P+ F + P+ASV IR Sbjct: 119 IGLSEFQQRVNFKRAIEGELVRTILRFKNIEDARVHIALPEKSIFLRDEKEPSASVFIRL 178 Query: 180 INPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQ 235 + + +AIR+LVAA++ NL +V V+D G+ LTA +E + I K L I + Sbjct: 179 RPGAEITEEQVKAIRNLVAASIENLKPENVVVIDDKGRNLTANLDEGKEEISNKQLKIRR 238 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 + EIE + AL LG N + V EL+ Q RE YDPD S + K+ Sbjct: 239 EFEREIERKVQTALEEALGYGNVKVRVSVELDFTKVQRREETYDPDMTAVVSEQKRKE-- 296 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 ++ + N+P + +L T+KKE +NYE++ K + + + K++ Sbjct: 297 KTTGAPVGGVPGAAANIPPGTGAVQGQGGTL--TEKKETITNYEVSKKEVISVDNTLKIK 354 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 RLS+ V++NK D I KIVSAA G++ +RGDT+++ ++ F + Sbjct: 355 RLSVGVIINK-------------ELKDVNEESIKKIVSAAVGLDPKRGDTLSVVAVPFKK 401 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + + +I +V V LL+ F L LR+ Sbjct: 402 PAIAEEMGPPIPTWKKF------LIPGVVGAVMALLLVFGLLRFLRKKE----------- 444 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 + A + + +A S + + +R L+ + + Sbjct: 445 ----------APAPVAVEVSAEEVATISGAEALRETARELE----------IVKTITEVA 484 Query: 536 EINEERFAKILRKWARSE 553 ++ A +L+ W R E Sbjct: 485 RKEPKKVAAMLKLWLREE 502 >gi|108562771|ref|YP_627087.1| flagellar MS-ring protein [Helicobacter pylori HPAG1] gi|107836544|gb|ABF84413.1| flagellar basal-body M-ring protein [Helicobacter pylori HPAG1] Length = 567 Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 123/548 (22%), Positives = 239/548 (43%), Gaps = 29/548 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEV 57 +L +++ FF + +I ++A+ +L+ +L + Y L+ L+ Sbjct: 6 LLQRIVDFFIKLNK--KQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEGLDS 63 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 SD I L + I +++S + +I +P V + RI LA+QG+P +S G+E+FD Sbjct: 64 SDNALILQHLQQNQIPYKVSKD-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFDTK 121 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 + FG T F Q I +RA+EGE++RTI+S++ I+ A VHI +P F P+ASVM+ Sbjct: 122 D-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180 Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232 + I++L+AAAVP L + +V +++ G+ + + + + + L Sbjct: 181 KLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLH 240 Query: 233 IVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 Q ++ +E I LA +G N + V AE + ++ + +DP++ V L Sbjct: 241 YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE 300 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + + + Q V N+ V K + E +K + +NYE+ + Sbjct: 301 EKKEGAPKKQVGGVPGVVSNIGPVQGLKD--NKEPEKYEKSQNTTNYEVGKTISEIKGEF 358 Query: 352 YKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 L RL+ AVVV+ L + + D L +IN +V A G N RGD + + Sbjct: 359 GTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLQKINALVKQAIGYNQNRGDDVAV 418 Query: 409 TSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463 ++ +F + ++ T+ M + + + +++ +++ + R+ Sbjct: 419 SNFEFNPMAPMLDNATLSEKIMHKTQKILGSFTPLIKYVLVFIVLFIFYKKVIVPFSERM 478 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRIN 520 + + EV G + D + L+++ + + +I Sbjct: 479 LEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIILEKIR 538 Query: 521 SYVSKQSD 528 + ++ D Sbjct: 539 GTLKERPD 546 >gi|298736711|ref|YP_003729241.1| flagellar M-ring protein FliF [Helicobacter pylori B8] gi|298355905|emb|CBI66777.1| flagellar M-ring protein FliF [Helicobacter pylori B8] Length = 567 Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 123/548 (22%), Positives = 239/548 (43%), Gaps = 29/548 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEV 57 +L +++ FF + +I ++A+ +L+ +L + Y L+ L+ Sbjct: 6 LLQRIVDFFIKLNK--KQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEGLDS 63 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 SD I L + I +++S + +I +P V + RI LA+QG+P +S G+E+FD Sbjct: 64 SDNALILQHLQQNQIPYKVSKD-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFDTK 121 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 + FG T F Q I +RA+EGE++RTI+S++ I+ A VHI +P F P+ASVM+ Sbjct: 122 D-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180 Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232 + I++L+AAAVP L + +V +++ G+ + + + + + L Sbjct: 181 KLKPDMKLSPTQILGIKNLIAAAVPKLTIDNVKIVNENGESIGEGDIPENSKELALEQLH 240 Query: 233 IVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 Q ++ +E I LA +G N + V AE + ++ + +DP++ V L Sbjct: 241 YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE 300 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + + + Q V N+ V K + E +K + +NYE+ + Sbjct: 301 EKKEGTPKKQVGGVPGVVSNIGPVQGLKD--NKEPEKYEKSQNTTNYEVGKTISEIKGEF 358 Query: 352 YKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 L RL+ AVVV+ L + + D L +IN +V A G N RGD + + Sbjct: 359 GTLVRLNAAVVVDGKYKIALKDGTNTLEYEPLSDESLQKINALVKQAIGYNQNRGDDVAV 418 Query: 409 TSMDFLEN-QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463 ++ +F + ++ T+ M + + + +++ +++ + R+ Sbjct: 419 SNFEFNPIMPMLDNATLSEKIMHKTQKILGSFTPLIKYVLVFIVLFIFYKKVIVPFSERM 478 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRIN 520 + + EV G + D + L+++ + + +I Sbjct: 479 LEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIILEKIR 538 Query: 521 SYVSKQSD 528 + ++ D Sbjct: 539 GTLKERPD 546 >gi|242310458|ref|ZP_04809613.1| flagellar basal-body m-ring protein flif [Helicobacter pullorum MIT 98-5489] gi|239522856|gb|EEQ62722.1| flagellar basal-body m-ring protein flif [Helicobacter pullorum MIT 98-5489] Length = 575 Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 113/491 (23%), Positives = 217/491 (44%), Gaps = 27/491 (5%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVN--------SPHYDNLYV 53 A+ +Q+ +K L + + +++ + I+ + A + + P Y L+ Sbjct: 5 ALFEQIRNLYKR---LNKKQKIVILATIVAIVGFISALIVWNSINNKAGVLYPGYAVLFE 61 Query: 54 KLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYEL 113 + D I L + I ++I + ++I +P +V + R+ LA+ G+P SS G+E+ Sbjct: 62 GVSPEDGALIIQQLQQDKIPYKIPKD-NTILIPQELVYEERMKLASNGIPKSSK-VGFEI 119 Query: 114 FDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTA 173 FD FG T F Q I +RA+EGE+ARTI+S+S I A VHI P+ F PTA Sbjct: 120 FD-TQDFGATDFDQRIKYLRAIEGELARTIESLSPIQKATVHIAQPEKSVFVSEQTPPTA 178 Query: 174 SVMI--RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILG 228 SV++ + K I+++V++A+PNL + +V V++ G+ L+ + R + Sbjct: 179 SVVLAFKPAQTLTPKQISGIKNIVSSAIPNLTIENVEVVNEKGEPLSELDELGGARELAA 238 Query: 229 KSLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS 287 L + +E I LA G + + V AE + ++ + YDP++ V Sbjct: 239 AQLRYKSNFEQSLEEKIINILAPITGGKEGVVAKVTAEFDFAQKESTQEYYDPNNVVRSE 298 Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 L + + ++ + V N+ V + + + E +K + +NYE++ Sbjct: 299 QNLEESREGAKPKEIGGVPGVVSNIGPV--QGLENEDAKEKYEKSQTTTNYEVSKTISNI 356 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQ----GKIDSYLAEINKIVSAATGINSRRG 403 + + RLS AVVV+ ++ +Q + +I +V A G N +RG Sbjct: 357 KGEFATIRRLSAAVVVDGKYQKQLDNNGVEQLEYIALNQQEMEQITALVRQAIGYNQQRG 416 Query: 404 DTITITSMDFL-ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 D +++++ + F + T F++ + L ++V +++ + Sbjct: 417 DEVSVSNFQLNGQISGFKARTPLERFLETSQELLTPFMPLLKYVVVGIILFLFYKKVIVP 476 Query: 463 LHNIDDAKKGE 473 K + Sbjct: 477 FSERMLEAKAD 487 >gi|217031571|ref|ZP_03437076.1| hypothetical protein HPB128_21g129 [Helicobacter pylori B128] gi|216946771|gb|EEC25367.1| hypothetical protein HPB128_21g129 [Helicobacter pylori B128] Length = 567 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 123/548 (22%), Positives = 239/548 (43%), Gaps = 29/548 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEV 57 +L +++ FF + +I ++A+ +L+ +L + Y L+ L+ Sbjct: 6 LLQRIVDFFIKLNK--KQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEGLDS 63 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 SD I L + I +++S + +I +P V + RI LA+QG+P +S G+E+FD Sbjct: 64 SDNALILQHLQQNQIPYKVSKD-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFDTK 121 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 + FG T F Q I +RA+EGE++RTI+S++ I+ A VHI +P F P+ASVM+ Sbjct: 122 D-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180 Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232 + I++L+AAAVP L + +V +++ G+ + + + + + L Sbjct: 181 KLKPDMKLSPTQILGIKNLIAAAVPKLTIDNVKIVNENGESIGEGDILENSKELALEQLH 240 Query: 233 IVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 Q ++ +E I LA +G N + V AE + ++ + +DP++ V L Sbjct: 241 YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE 300 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + + + Q V N+ V K + E +K + +NYE+ + Sbjct: 301 EKKEGTPKKQVGGVPGVVSNIGPVQGLKD--NKEPEKYEKSQNTTNYEVGKTISEIKGEF 358 Query: 352 YKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 L RL+ AVVV+ L + + D L +IN +V A G N RGD + + Sbjct: 359 GTLVRLNAAVVVDGKYKIALKDGTNTLEYEPLSDESLQKINALVKQAIGYNQNRGDDVAV 418 Query: 409 TSMDFLEN-QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463 ++ +F + ++ T+ M + + + +++ +++ + R+ Sbjct: 419 SNFEFNPIMPMLDNATLSEKIMHKTQKILGSFTPLIKYVLVFIVLFIFYKKVIVPFSERM 478 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRIN 520 + + EV G + D + L+++ + + +I Sbjct: 479 LEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIILEKIR 538 Query: 521 SYVSKQSD 528 + ++ D Sbjct: 539 GTLKERPD 546 >gi|90577381|ref|ZP_01233192.1| flagellar M-ring protein [Vibrio angustum S14] gi|90440467|gb|EAS65647.1| flagellar M-ring protein [Vibrio angustum S14] Length = 581 Score = 361 bits (927), Expect = 2e-97, Method: Composition-based stats. Identities = 120/564 (21%), Positives = 229/564 (40%), Gaps = 37/564 (6%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 A ++ L + S R L+L++V+ + + + +S +Y LY + E D Sbjct: 27 AYINNLKNLWHSS-----QRNLVLSAVLAAIVAAIIVVALWSSSQNYRPLYGQQERFDSG 81 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L I +R+ + + V V K R+ LAA+G+ + +G + + +S G Sbjct: 82 EIISVLETEGIPYRLQEANGQVLVAEGEVAKIRMLLAAKGI-KAKLPTGLDSLKEDSSLG 140 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAI 180 + FM+ LEGE+ RTI ++ I ARVH+ +P F + A PTASVM+ Sbjct: 141 TSQFMETARYRHGLEGELVRTIIALDAIANARVHLAIPRKTLFVRHNAEAPTASVMVELK 200 Query: 181 NPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIVQ 235 K EAI +LV +V + +V+V+D G+LL+A+ + K L + Sbjct: 201 PGEDLKTDQVEAIINLVTGSVTGMKTENVSVVDQYGRLLSADIGSSEMGKVNAKYLDYQK 260 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 ++ ++ L +G N+R V A+L+ Q + V D V+ R+ ++ Sbjct: 261 NLEKQVIQRAADMLTPIVGPSNYRVQVAADLDFSHVQETKEVVDSTPVVKNEHRIENNSI 320 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 + N P V+ + S ++ E Y + + T + KL Sbjct: 321 D---NIALGVPGSLSNKPPVTGEEENKD-SKNTNERTEINRQYALGSSVRHTQYQQGKLN 376 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 +L+++V++N + ++ +I+ ++ A GI++ RGD+++I S +F Sbjct: 377 KLNVSVLLNSTAAPNG------KAWTEAETQQISNMIKDAVGISADRGDSLSILSFNFTP 430 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + + + + +I + L + F L L D ++ E+ Sbjct: 431 IAIDAPPAIPWWQDPTVQQPLRYMIGG----ILGLSMIFFVLRPLISHLTGLDRRRDELT 486 Query: 476 GKSILSPPPISSAVTTGLMPNDNIAL---------DSSNQDIFSHSRNLQSRINSYVSKQ 526 ++ T L D +N + + L + + + Sbjct: 487 FAEEDIAHSYDESLQTREEQEHEETLNERLAAKGIDGTNNAFNASNDLLPPQGSPLEIQL 546 Query: 527 SDLRLLHMIEINEERFAKILRKWA 550 L+L + ER A++L++W Sbjct: 547 KHLQL--ISTEEPERVAEVLKQWV 568 >gi|254228798|ref|ZP_04922221.1| flagellar M-ring protein FliF [Vibrio sp. Ex25] gi|262396483|ref|YP_003288336.1| flagellar M-ring protein FliF [Vibrio sp. Ex25] gi|151938745|gb|EDN57580.1| flagellar M-ring protein FliF [Vibrio sp. Ex25] gi|262340077|gb|ACY53871.1| flagellar M-ring protein FliF [Vibrio sp. Ex25] Length = 569 Score = 361 bits (927), Expect = 2e-97, Method: Composition-based stats. Identities = 119/556 (21%), Positives = 232/556 (41%), Gaps = 30/556 (5%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 +L Q + S R L+L++V+ + + + +S + LY + E D+ I Sbjct: 21 KLKQIWSSS-----QRNLVLSAVLAAIVAAIIVVALWSSSQSFRPLYSQQERFDIGEIVS 75 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L + +R+ + + VP V K R+ LA++G+ + +G + + +S G + F Sbjct: 76 VLESEGVSYRMQEQNGQVLVPEGEVAKVRMLLASKGV-KAKLPTGLDSLKEDSSLGTSQF 134 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAINPSV 184 M+ LEGE+ RTI S++ + ARVH+ +P F + + P+ASVM+ Sbjct: 135 METARYRHGLEGELVRTIMSLNSVANARVHLAIPRQTLFVRQNSENPSASVMLELKPGED 194 Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIVQAIQH 239 K EAI +LV +V + V+V+D G+LL+A+ K L + ++ Sbjct: 195 LKSEQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLSADVASAEAGKVNAKYLEYQKNVEK 254 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 +I L +G NFR V A+++ + + + D ++ V R+ + + Sbjct: 255 QIIQRAADMLTPIVGPSNFRVQVAADMDFSQVEETQEILD-NAPVVRNEHTIHNNSVDQI 313 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + N P V+ +V S + E Y + + T + ++E++S+ Sbjct: 314 AL--GVPGSLSNQPPVTGEEVETNDSQNTNARSEVNRQYAVGSSVRRTQYQQGQIEKMSV 371 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 +V++N + + ++ +I+ ++ A GI++ RGD++++ S +F ++ Sbjct: 372 SVLLNSKASPDGV------AWSEADKEQISNMIMDAVGISAARGDSLSLMSFNFTPIEID 425 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + + + VI L+ L + F L L D E+ Sbjct: 426 APPALPWWQDPTVQQPIRYVIGGLL----GLAMIFFVLRPLIMHLTGVDKPVPELDFAEP 481 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL----LHMI 535 P + T ++ + ++ S S L + S L + L +I Sbjct: 482 QEEPDYDNLQTREEREHEEVLDRRLSEKGISASSGLDVNSDMLPPAGSPLEIQLKHLQLI 541 Query: 536 E-INEERFAKILRKWA 550 ER A+IL++W Sbjct: 542 ANEEPERVAEILKQWV 557 >gi|311086968|gb|ADP67048.1| flagellar MS-ring protein [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 545 Score = 361 bits (927), Expect = 2e-97, Method: Composition-based stats. Identities = 100/427 (23%), Positives = 190/427 (44%), Gaps = 26/427 (6%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + F R I++L + + + + ++ SP Y LY L D I Sbjct: 15 KKFNNFLSGFLKNSRFLIILLTAAAITAVSI----SVWIKSPEYQVLYNHLSNEDSGSII 70 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L+E I ++ +D+ I VP V + R+ LA LP S G+EL DK FG++ Sbjct: 71 NELNEMKIPYQFTDSDGLILVPKDKVYEIRLRLAENNLPRGGS-IGFELLDKE-KFGISQ 128 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 + ++I RALEGE+ARTI+ I+ + AR+HI F + + +AS+++ Sbjct: 129 YNEQINYHRALEGELARTIKKINSVKNARIHIAFSKSSLFLQDKKKSSASIILELQPGRN 188 Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIVQAIQHEI 241 AI HL+++++ +L + ++T++D +GKLL +E + + I+ Sbjct: 189 LNTGQINAIMHLISSSISDLPVENITIVDQSGKLLNQTSVEYDQVNDSQFKYTEEIETRY 248 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRS 297 I L +G+ N + V A+++ + Q+ + Y P+S + RS ++ + Sbjct: 249 RNRIKNILEPLVGIGNIYAQVTAQIDFNAQEKTQEKYSPNSDHKNQSIRSHQIIIHNEIE 308 Query: 298 ETSQPESAVTVEQNMPH--VSDRKVPLPRSLENTD-------KKEEQSNYEINTKSIATT 348 +++ E N + + + ++L+N ++ NYE+N T Sbjct: 309 KSNIQEETPIPLSNSNNHVYFNNNIKNSKNLKNNYIPVDSKINRDNTVNYELNHSVSHTK 368 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 + +++RLS AV+VN + + I ++ A G + RGD++ + Sbjct: 369 MNIGEIKRLSAAVIVNFSKDKNGK----FVPLSTQKIKNIEHLIREAIGYSKARGDSVHL 424 Query: 409 TSMDFLE 415 + F + Sbjct: 425 VNASFAK 431 >gi|219681452|ref|YP_002467837.1| flagellar M-ring protein [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682008|ref|YP_002468392.1| flagellar M-ring protein [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471127|ref|ZP_05635126.1| flagellar MS-ring protein [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219621741|gb|ACL29897.1| flagellar M-ring protein [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624295|gb|ACL30450.1| flagellar M-ring protein [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311086388|gb|ADP66469.1| flagellar MS-ring protein [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 545 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 100/427 (23%), Positives = 190/427 (44%), Gaps = 26/427 (6%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + F R I++L + + + + ++ SP Y LY L D I Sbjct: 15 KKFNNFLSGFLKNSRFLIILLTAAAITAVSI----SVWIKSPEYQVLYNHLSNEDSGSII 70 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L+E I ++ +D+ I VP V + R+ LA LP S G+EL DK FG++ Sbjct: 71 NELNEMKIPYQFTDSDGPILVPKDKVYEIRLRLAENNLPRGGS-IGFELLDKE-KFGISQ 128 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 + ++I RALEGE+ARTI+ I+ + AR+HI F + + +AS+++ Sbjct: 129 YNEQINYHRALEGELARTIKKINSVKNARIHIAFSKSSLFLQDKKKSSASIILELQPGRN 188 Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIVQAIQHEI 241 AI HL+++++ +L + ++T++D +GKLL +E + + I+ Sbjct: 189 LNTGQINAIMHLISSSISDLPVENITIVDQSGKLLNQTSVEYDQVNDSQFKYTEEIETRY 248 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRS 297 I L +G+ N + V A+++ + Q+ + Y P+S + RS ++ + Sbjct: 249 RNRIKNILEPLVGIGNIYAQVTAQIDFNAQEKTQEKYSPNSDHKNQSIRSHQIIIHNEIE 308 Query: 298 ETSQPESAVTVEQNMPH--VSDRKVPLPRSLENTD-------KKEEQSNYEINTKSIATT 348 +++ E N + + + ++L+N ++ NYE+N T Sbjct: 309 KSNIQEETPIPLSNSNNHVYFNNNIKNSKNLKNNYIPVDSKINRDNTVNYELNHSVSHTK 368 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 + +++RLS AV+VN + + I ++ A G + RGD++ + Sbjct: 369 MNIGEIKRLSAAVIVNFSKDKNGK----FVPLSTQKIKNIEHLIREAIGYSKARGDSVHL 424 Query: 409 TSMDFLE 415 + F + Sbjct: 425 VNASFAK 431 >gi|308184148|ref|YP_003928281.1| flagellar MS-ring protein [Helicobacter pylori SJM180] gi|308060068|gb|ADO01964.1| flagellar MS-ring protein [Helicobacter pylori SJM180] Length = 567 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 123/548 (22%), Positives = 239/548 (43%), Gaps = 29/548 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEV 57 +L +++ FF + +I ++A+ +L+ +L + Y L+ L+ Sbjct: 6 LLQRIVDFFIKLNK--KQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFEGLDS 63 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 SD I L + I +++S + +I +P V + RI LA+QG+P +S G+E+FD Sbjct: 64 SDNALILQHLQQNQIPYKVSKD-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFDTK 121 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 + FG T F Q I +RA+EGE++RTI+S++ I+ A VHI +P F P+ASVM+ Sbjct: 122 D-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180 Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232 + I++L+AAAVP L + +V +++ G+ + + + + + L Sbjct: 181 KLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLH 240 Query: 233 IVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 Q ++ +E I LA +G N + V AE + ++ + +DP++ V L Sbjct: 241 YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE 300 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + + + Q V N+ V K + E +K + +NYE+ + Sbjct: 301 EKKEGAPKKQVGGVPGVVSNIGPVQGLKD--NKEPEKYEKSQNTTNYEVGKTISEIKGEF 358 Query: 352 YKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 L RL+ AVVV+ L + + D L +IN +V A G N RGD + + Sbjct: 359 GTLVRLNAAVVVDGKYKIALKDGANALEYEPLSDESLKKINALVKQAIGYNQNRGDDVAV 418 Query: 409 TSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463 ++ +F + ++ T+ M + + + +++ +++ + R+ Sbjct: 419 SNFEFNPMAPMIDNATLSEKIMHKTQKILGSFTPLIKYVLVFIVLFIFYKKVIVPFSERM 478 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRIN 520 + + EV G + D + L+++ + + +I Sbjct: 479 LEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIILEKIR 538 Query: 521 SYVSKQSD 528 + ++ D Sbjct: 539 GTLKERPD 546 >gi|311087544|gb|ADP67623.1| flagellar MS-ring protein [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 545 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 100/427 (23%), Positives = 190/427 (44%), Gaps = 26/427 (6%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + F R I++L + + + + ++ SP Y LY L D I Sbjct: 15 KKFNNFLSGFLKNSRFLIILLTAAAITAVSI----SVWIKSPEYQVLYNHLSNEDSGSII 70 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L+E I ++ +D+ I VP V + R+ LA LP S G+EL DK FG++ Sbjct: 71 NELNEMKIPYQFTDSDGPILVPKDKVYEIRLRLAENNLPRGGS-IGFELLDKE-KFGISQ 128 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 + ++I RALEGE+ARTI+ I+ + AR+HI F + + +AS+++ Sbjct: 129 YNEQINYHRALEGELARTIKKINSVKNARIHIAFSKSSLFLQDKKKSSASIILELQPGRN 188 Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIVQAIQHEI 241 AI HL+++++ +L + ++T++D +GKLL +E + + I+ Sbjct: 189 LNTGQINAIMHLISSSISDLPVENITIVDQSGKLLNQTSVEYDQVNDSQFKYTEEIETRY 248 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRS 297 I L +G+ N + V A+++ + Q+ + Y P+S + RS ++ + Sbjct: 249 RNRIKNILEPLVGIGNIYAQVTAQIDFNAQEKTQEKYSPNSDHKNQSIRSHQIIIHNEIE 308 Query: 298 ETSQPESAVTVEQNMPH--VSDRKVPLPRSLENTD-------KKEEQSNYEINTKSIATT 348 +++ E N + + + ++L+N ++ NYE+N T Sbjct: 309 KSNIQEETPIPLSNSNNHVYFNNNIKNSKNLKNNYIPVDSKINRDNTVNYELNHSVSHTK 368 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 + +++RLS AV+VN + + I ++ A G + RGD++ + Sbjct: 369 MNIGEIKRLSAAVIVNFSKDKNGK----FVPLSTQKIKNIEHLIREAIGYSKARGDSVHL 424 Query: 409 TSMDFLE 415 + F + Sbjct: 425 VNASFAK 431 >gi|317052367|ref|YP_004113483.1| flagellar M-ring protein FliF [Desulfurispirillum indicum S5] gi|316947451|gb|ADU66927.1| flagellar M-ring protein FliF [Desulfurispirillum indicum S5] Length = 558 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 134/559 (23%), Positives = 246/559 (44%), Gaps = 27/559 (4%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFV---NSPHYDNLYVKLEVSDVNRI 63 + Q + L RT+ + LA VI ++ + + + P L+ L + D + Sbjct: 9 ISQLSRVLQKLSRTQQITLALVIGASVITIITLIIWAVVASRPGNQVLFSNLAMEDAGEV 68 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + L+E + + I ++G +I VP ++V + R++LA QGLP S G+E+FD G+T Sbjct: 69 AAKLAELRVPYEIHNDGRTILVPGNVVHETRLNLAQQGLPR-GSGVGFEIFDSA-GIGMT 126 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 F+Q++ RAL+GE+ RTI +I GI +ARVHI +P+ F ASV +R + Sbjct: 127 EFIQKVNFRRALQGELGRTISAIDGIESARVHIALPERSLFISQDRGAEASVALRLSPHT 186 Query: 184 VY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAI 237 + I HLV+++V L VTV+D G++L E + L + + Sbjct: 187 RLSGDQVKGIIHLVSSSVEGLTPEGVTVVDEQGRILNDLIQERSEESTLSVTQLMYQRNM 246 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + +++ ++ L + LG N S V EL+ D + + YDP + V RS + ++ ++ Sbjct: 247 ERNLQIALDNLLVSVLGQGNSYSNVSLELDFDKVEQQIEAYDPAN-VPRSEQRIEEREQG 305 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 +Q V N+ +D+ P + ++ E +NYE+ T +++RL Sbjct: 306 REAQ-GGIPGVRANI---ADQDDPEAGLMTTRSREVETTNYEVGRTLTQITRSRGQIKRL 361 Query: 358 SIAVVVNKGRL---TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 ++AV VN + + + + Q + L +I +V +A G N RGD + +T++ F Sbjct: 362 TVAVAVNGNYVQQQADGVSQVVYQPRSSEELDKITALVQSAIGYNEGRGDRVVVTNLQFG 421 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 E S ++ M L + + +F + + + + + + E+ Sbjct: 422 EPP--KSRWQELMEMQDLWKEMLKYLGIALFFLFAFIFI---IRPIVKWVTDMTRDEDEL 476 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 V T L I S S S + V + +L + Sbjct: 477 KKTFGTGQKKPKQLVPTQLPKTLAELEAEMESQIDSESSVSASAVRGKVIR---KKLSDI 533 Query: 535 IEINEERFAKILRKWARSE 553 ++ N A+++R W + Sbjct: 534 VQENPAGAAQLIRIWINDD 552 >gi|148980292|ref|ZP_01815979.1| flagellar M-ring protein [Vibrionales bacterium SWAT-3] gi|145961311|gb|EDK26621.1| flagellar M-ring protein [Vibrionales bacterium SWAT-3] Length = 557 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 135/526 (25%), Positives = 232/526 (44%), Gaps = 34/526 (6%) Query: 38 AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97 + +S + LY K D +++ L E +I +++S + I VP V K R+ L Sbjct: 55 VIMLWTSSERFRPLYSKSANFDSSQVLHMLDEESIRYQLSQDDGQILVPEGDVAKIRMIL 114 Query: 98 AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 A++GL SG++ D S G + FM+ ALEGE+AR+I ++S + ARVH+ Sbjct: 115 ASKGL-KEQLPSGFDSLDSSKSLGESQFMENARYRHALEGELARSITTMSAVSLARVHLA 173 Query: 158 MPDMGSFRKIG-ARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTG 214 +P F + +P ASV++ IN K E+I +LV+ AV L V V+D G Sbjct: 174 IPKESLFMRDDAEQPRASVIVHIINGMDLKPTQVESIINLVSGAVIGLKSEHVRVVDQHG 233 Query: 215 KLLTANEMERNI---LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ 271 +LL+ + +I GK + ++ + L LG NFR + ++++ Sbjct: 234 RLLSNDATVGDITVTTGKQSDYKRNLEKTLVAQATDMLTPILGAANFRVQIASDIDFSKV 293 Query: 272 QIREIVY-DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD 330 + E +Y DP V R L D +E+S N P V+D + P P + Sbjct: 294 EETEEIYADP---VVRKETLLSD--MNESSMALGIPGALSNTPPVTDGE-PQPEPNAKVN 347 Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINK 390 + E +Y ++ K T H L+ LS+++VVN + +Q L + Sbjct: 348 RSETSRDYAVSGKVRHTQHQQGVLQNLSVSIVVNDLA-------NPNQTWTPEELTNVEN 400 Query: 391 IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL 450 +V +A G N+ RGD+I T F+ + V F + ++ L +L+G + Sbjct: 401 VVRSAIGFNTERGDSIHTTHFPFVIASIPEQAPV-AWFENT------HIMQPLKYLLGVM 453 Query: 451 LVTFLGLHALRRLHN--IDDAKKGEVGGKSILSPPPIS--SAVTTGLMPNDNIALDSSNQ 506 L + + LR L A++ E+ +S+ I+ + + +L Sbjct: 454 LSGLMIMVVLRPLAQYLTKSAEQEELEAESMEYDDVITKEERAADAALQSKLESLGIDAT 513 Query: 507 DIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 I + NL S + + L+L + + + R A+ILR W ++ Sbjct: 514 GIKALDDNLPSADSPLEVQIKHLKL--IAKEDPNRVAEILRTWIQA 557 >gi|254779042|ref|YP_003057147.1| flagellar MS-ring protein [Helicobacter pylori B38] gi|254000953|emb|CAX28897.1| Flagellar M-ring protein [Helicobacter pylori B38] Length = 567 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 123/548 (22%), Positives = 239/548 (43%), Gaps = 29/548 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEV 57 +L +++ FF + +I ++A+ +L+ +L + Y L+ L+ Sbjct: 6 LLQRIVDFFIKLNK--KQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEGLDS 63 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 SD I L + I +++S + +I +P V + RI LA+QG+P +S G+E+FD Sbjct: 64 SDNALILQHLQQNQIPYKVSKD-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFDTK 121 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 + FG T F Q I +RA+EGE++RTI+S++ I+ A VHI +P F P+ASVM+ Sbjct: 122 D-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180 Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232 + I++L+AAAVP L + +V +++ G+ + + + + + L Sbjct: 181 KLKPDMKLSPTQILGIKNLIAAAVPKLTIDNVKIVNENGESIGEGDILENSKELALEQLH 240 Query: 233 IVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 Q ++ +E I LA +G N + V AE + ++ + +DP++ V L Sbjct: 241 YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE 300 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + + + Q V N+ V K + E +K + +NYE+ + Sbjct: 301 EKKEGAPKKQVGGVPGVVSNIGPVQGLKD--NKEPEKYEKSQNTTNYEVGKTISEIKGEF 358 Query: 352 YKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 L RL+ AVVV+ L + + D L +IN +V A G N RGD + + Sbjct: 359 GTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLQKINALVKQAIGYNQNRGDDVAV 418 Query: 409 TSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463 ++ +F + ++ T+ M + + + +++ +++ + R+ Sbjct: 419 SNFEFNPMAPMIDNATLSEKIMHKTQKILGSFTPLIKYVLVFIVLFIFYKKVIVPFSERM 478 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRIN 520 + + EV G + D + L+++ + + +I Sbjct: 479 LEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIILEKIR 538 Query: 521 SYVSKQSD 528 + ++ D Sbjct: 539 GTLKERPD 546 >gi|308182520|ref|YP_003926647.1| flagellar MS-ring protein [Helicobacter pylori PeCan4] gi|308064705|gb|ADO06597.1| flagellar MS-ring protein [Helicobacter pylori PeCan4] Length = 567 Score = 360 bits (925), Expect = 3e-97, Method: Composition-based stats. Identities = 123/548 (22%), Positives = 238/548 (43%), Gaps = 29/548 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEV 57 +L +++ FF + +I ++A+ +L+ +L + Y L+ L+ Sbjct: 6 LLQRIVDFFIKLNK--KQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFEGLDS 63 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 SD I L + I +++S + +I +P V + RI LA+QG+P +S G+E+FD Sbjct: 64 SDNALILQHLQQNQIPYKVSKD-DTILIPRDKVYEERITLASQGIPKTSK-VGFEIFDTK 121 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 + FG T F Q I +RA+EGE++RTI+S++ I+ A VHI +P F P+ASVM+ Sbjct: 122 D-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180 Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232 + I++L+AAAVP L +V +++ G+ + + + + + L Sbjct: 181 KLKPDMKLSPTQILGIKNLIAAAVPKLTTENVKIVNENGESIGEGDILENSKELALEQLR 240 Query: 233 IVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 Q ++ +E I LA +G N + V AE + ++ + +DP++ V L Sbjct: 241 YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE 300 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + + + Q V N+ V K + E +K + +NYE+ + Sbjct: 301 EKKEGAPKKQVGGVPGVVSNIGPVQGLKD--NKEPEKYEKSQNTTNYEVGKTISEIKGEF 358 Query: 352 YKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 L RL+ AVVV+ L + + D L +IN +V A G N RGD + + Sbjct: 359 GTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLQKINALVKQAIGYNQNRGDDVAV 418 Query: 409 TSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463 ++ +F + ++ T+ M + + + +++ +++ + R+ Sbjct: 419 SNFEFNPMAPMIDNATLSEKIMHKTQKILGSFTPLIKYILVFIVLFIFYKKVIVPFSERM 478 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRIN 520 + + EV G + D + L+++ + + +I Sbjct: 479 LEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIVLEKIR 538 Query: 521 SYVSKQSD 528 + ++ D Sbjct: 539 GTLKERPD 546 >gi|297617138|ref|YP_003702297.1| flagellar M-ring protein FliF [Syntrophothermus lipocalidus DSM 12680] gi|297144975|gb|ADI01732.1| flagellar M-ring protein FliF [Syntrophothermus lipocalidus DSM 12680] Length = 512 Score = 360 bits (924), Expect = 4e-97, Method: Composition-based stats. Identities = 130/550 (23%), Positives = 233/550 (42%), Gaps = 64/550 (11%) Query: 12 KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71 + L + ++++ +L+ ++ + +Y+ LY L V D I+ L E Sbjct: 17 NRWSLLTLNQKVLISGAVLLTLVSLGMLLSSQTAKNYEPLYSGLSVEDAAAITKKLDELK 76 Query: 72 IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131 I +R+SD GS+I VPS + R+ LA +GLP +G+ELF + SFG T + + Sbjct: 77 ISYRLSDEGSTILVPSEQKYQVRLQLAGEGLPKG--TAGFELF-QSTSFGETETDKRVKY 133 Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI--NPSVYKSAE 189 + AL+GE+ RTI+S+ I +ARVH+V+P+ + A TASV+++ + Sbjct: 134 LTALQGELVRTIESLDKIESARVHLVLPEPRLYVDQEAPATASVVLKVKIGEELTNREIS 193 Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK------SLSIVQAIQHEIEM 243 I HLVA +V L +V V+D G LL+A+ + + +++ + ++ E + Sbjct: 194 GIVHLVANSVEKLKPENVVVVDQYGNLLSADIPSADSMASAELSVQQMAVKRQLEREKQQ 253 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 + L A LG V AELN D + +DP+ +V S +++ S + Sbjct: 254 AVQSMLDATLGPGKSVVRVNAELNFDEVEQYSQDFDPEQRVVVSKHTVEESNTSSNTGAA 313 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 ++ V+ N+P + S ++K E+ NYE + T ++R+++AV+V Sbjct: 314 ASPGVDTNVPTYQGTE-GQGTSSSTSEKTEQTVNYEGDKVETKTKVAPGAIKRMTVAVLV 372 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 ++G +S EI + V A G + +R D++ ++ M F + Sbjct: 373 DEG--------------FESKREEIVEAVKNAVGADEKRNDSVYVSFMKFQTPTEETAPP 418 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 + + LV +L+ +L A++ E + Sbjct: 419 ASTW------QKYMLPAGLGATLVIAVLLFWLARR--------RKAQEQEGFEALVDEEI 464 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 PI S V L P + L + + +I+ N A Sbjct: 465 PIESLVERELTPEEREKLKIREE------------------------IDKLIDENPADVA 500 Query: 544 KILRKWARSE 553 +I+R W E Sbjct: 501 QIIRTWLLEE 510 >gi|237752970|ref|ZP_04583450.1| flagellar basal-body m-ring protein flif [Helicobacter winghamensis ATCC BAA-430] gi|229375237|gb|EEO25328.1| flagellar basal-body m-ring protein flif [Helicobacter winghamensis ATCC BAA-430] Length = 572 Score = 360 bits (923), Expect = 4e-97, Method: Composition-based stats. Identities = 116/492 (23%), Positives = 226/492 (45%), Gaps = 29/492 (5%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNS--------PHYDNLYV 53 A+ +Q+ +K L + + +++ + I+V + A + ++ P Y L+ Sbjct: 5 ALFEQIRNLYK---KLNKKQKIVILATIVVVVGFISALIVWNSTSNKTGILYPGYAVLFE 61 Query: 54 KLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYEL 113 + D I L + I ++I + ++I +P V + R+ LA+ G+P SS G+E+ Sbjct: 62 GVSPEDGALIIQQLQQDKIPYKIPKD-NTILIPQEFVYEERMKLASNGIPKSSK-IGFEI 119 Query: 114 FDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTA 173 FD + FG T F Q I +RA+EGE+ARTI+S++ I A VH+ P+ F PTA Sbjct: 120 FDTKD-FGATDFDQRIKYLRAIEGELARTIESLAPIQKATVHLAQPEKTVFISEQTPPTA 178 Query: 174 SVMI--RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILG 228 SV++ + K I+++V++AVPNL + +V V++ G+ L+ + R + Sbjct: 179 SVVLVFKPAQTLTPKQISGIKNIVSSAVPNLTIQNVEVVNEKGEPLSELDELGGARELAV 238 Query: 229 KSLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS 287 L +H +E I L+ G + + V AE + ++ + YDP++ V RS Sbjct: 239 AQLRYKTDFEHALEEKIVNILSPIAGGREGVVAKVTAEFDFAQKESTQEYYDPNN-VVRS 297 Query: 288 IRLSKDAQRS-ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346 I+ ++ + + V N+ V + + E +K + +N+EI+ Sbjct: 298 IQDLEEKREGFRPKEIGGVPGVVSNIGPVQGLED--DNTKEKYEKTQNTTNFEISKTISN 355 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ----GKIDSYLAEINKIVSAATGINSRR 402 + + RLS AVVV+ E+ +Q + + +I+ +V A G N++R Sbjct: 356 IKGEFATIRRLSAAVVVDGRYEKELNEEGVEQLKYIALNEEDMTKISALVRQAIGYNNQR 415 Query: 403 GDTITITSMDFLEN-QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461 GD +++++ F + T F++ ++ + L +++ +++ F + Sbjct: 416 GDEVSVSNFQLNGQLSGFKARTPLERFLEASAKLLEPFMPLLKYVLVGIILFFFYKKVIV 475 Query: 462 RLHNIDDAKKGE 473 K + Sbjct: 476 PFSERMLEAKAD 487 >gi|317012189|gb|ADU82797.1| flagellar MS-ring protein [Helicobacter pylori Lithuania75] Length = 567 Score = 360 bits (923), Expect = 5e-97, Method: Composition-based stats. Identities = 123/548 (22%), Positives = 239/548 (43%), Gaps = 29/548 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEV 57 +L +++ FF + +I ++A+ +L+ +L + Y L+ L+ Sbjct: 6 LLQRIVDFFIKLNK--KQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEGLDS 63 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 SD I L + I +++S + +I +P V + RI LA+QG+P +S G+E+FD Sbjct: 64 SDNALILQHLQQNQIPYKVSKD-DTILIPRDKVYEERITLASQGIPKTSK-VGFEIFDTK 121 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 + FG T F Q I +RA+EGE++RTI+S++ I+ A VHI +P F P+ASVM+ Sbjct: 122 D-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180 Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232 + I++L+AAAVP L + +V +++ G+ + + + + + L Sbjct: 181 KLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLH 240 Query: 233 IVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 Q ++ +E I LA +G N + V AE + ++ + +DP++ V L Sbjct: 241 YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE 300 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + + + Q V N+ V K + E +K + +NYE+ + Sbjct: 301 EKKEGAPKKQVGGVPGVVSNIGPVQGLKD--NKEPEKYEKSQNTTNYEVGKTISEIKGEF 358 Query: 352 YKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 L RL+ AVVV+ L + + D L +IN +V A G N RGD + + Sbjct: 359 GTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDDVAV 418 Query: 409 TSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463 ++ +F + ++ T+ M + + + +++ +++ + R+ Sbjct: 419 SNFEFNPMAPVIDNATLSEKIMRKTQKILGSFTPLIKYVLVFIVLFIFYKKVIVPFSERM 478 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRIN 520 + + EV G + D + L+++ + + +I Sbjct: 479 LEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIILEKIR 538 Query: 521 SYVSKQSD 528 + ++ D Sbjct: 539 GTLKERPD 546 >gi|15616695|ref|NP_239907.1| flagellar MS-ring protein [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11386782|sp|P57175|FLIF_BUCAI RecName: Full=Flagellar M-ring protein gi|25304707|pir||A84938 flagellar M-ring protein [imported] - Buchnera sp. (strain APS) gi|10038758|dbj|BAB12793.1| flagellar M-ring protein [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 545 Score = 360 bits (923), Expect = 5e-97, Method: Composition-based stats. Identities = 100/427 (23%), Positives = 190/427 (44%), Gaps = 26/427 (6%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + F R I++L + + + + ++ SP Y LY L D I Sbjct: 15 KKFNNFLSGFLKNSRFLIILLTAAAITAVSI----SVWIKSPEYQVLYNHLSNEDRGSII 70 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L+E I ++ +D+ I VP V + R+ LA LP S G+EL DK FG++ Sbjct: 71 NELNEMKIPYQFTDSDGPILVPKDKVYEIRLRLAENNLPRGGS-IGFELLDKE-KFGISQ 128 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 + ++I RALEGE+ARTI+ I+ + AR+HI F + + +AS+++ Sbjct: 129 YNEQINYHRALEGELARTIKKINSVKNARIHIAFSKSSLFLQDKKKSSASIILELQPGRN 188 Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIVQAIQHEI 241 AI HL+++++ +L + ++T++D +GKLL +E + + I+ Sbjct: 189 LNTGQINAIMHLISSSISDLPVENITIVDQSGKLLNQTSVEYDQVNDSQFKYTEEIETRY 248 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRS 297 I L +G+ N + V A+++ + Q+ + Y P+S + RS ++ + Sbjct: 249 RNRIKNILEPLVGIGNIYAQVTAQIDFNAQEKTQEKYSPNSDHKNQSIRSHQIIIHNEIE 308 Query: 298 ETSQPESAVTVEQNMPH--VSDRKVPLPRSLENTD-------KKEEQSNYEINTKSIATT 348 +++ E N + + + ++L+N ++ NYE+N T Sbjct: 309 KSNIQEETPIPLSNSNNHVYFNNNIKNSKNLKNNYIPVDSKINRDNTVNYELNHSVSHTK 368 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 + +++RLS AV+VN + + I ++ A G + RGD++ + Sbjct: 369 MNIGEIKRLSAAVIVNFSKDKNGK----FVPLSTQKIKNIEHLIREAIGYSKARGDSVHL 424 Query: 409 TSMDFLE 415 + F + Sbjct: 425 VNASFAK 431 >gi|157959913|ref|YP_001499947.1| flagellar MS-ring protein [Shewanella pealeana ATCC 700345] gi|157844913|gb|ABV85412.1| flagellar M-ring protein FliF [Shewanella pealeana ATCC 700345] Length = 566 Score = 359 bits (922), Expect = 6e-97, Method: Composition-based stats. Identities = 122/569 (21%), Positives = 229/569 (40%), Gaps = 39/569 (6%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L+ L + ++ R +++ +V+ + + + S Y LY E + ++I Sbjct: 21 LNSLKEKWQQYNRGDRQ--VVILAVLAIVAACVIVLMLWSASQGYRPLYGNQEGVETSQI 78 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L I +RI N I V +G AR+ LAA+G+ + + L + ++ G + Sbjct: 79 IEVLEAEGISYRIDANSGLILVTEDKLGPARMLLAARGVKAKVPSGMESL--ENSNIGTS 136 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAINP 182 FM++ +LEGE++RTI ++ + ARVH+ +P F + PTASVM+ Sbjct: 137 QFMEQAKYRYSLEGELSRTIMALKAVKTARVHLAIPKKTLFIRQQPELPTASVMLELYAG 196 Query: 183 S--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQA 236 S + E+I +LVA +V + V V+D G L++ N+ + L Q Sbjct: 197 SNIQPEQIESIVNLVAGSVTGMTPDRVQVVDQEGNHLSSSISVNKDITQARDRQLKYTQE 256 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 ++ + + L LG D+F V A +N + + + DP + V +K+ Sbjct: 257 LEQSLIDRASSMLLPILGRDHFEVQVAANVNFNQVEETKESLDPLAVV------TKENLT 310 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 S + + A+ + + + + +E ++ T + +LE Sbjct: 311 SNETNSDMALGIPGALSNQPPAAEADESNARRNLNSQESRQFDTGRSVRHTRYQQMQLEN 370 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 LS++V++NK + + G + L +++ +V A G ++ RGD +I S DF Sbjct: 371 LSVSVLINKQS-------AGETGWTQTQLDQLSSMVQDAIGFSAARGDQFSINSFDFAPT 423 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR-LHNIDDAKKGEVG 475 Q+ + + + I AL+ L + F L L + L + + Sbjct: 424 QIAEFEPMPWWQGESYQTYLRYFIGALL----GLAMIFFVLRPLVKHLTKTVEHNLKSID 479 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDS--------SNQDIFSHSRNLQSRINSYVSKQS 527 + S PP + VT N+ A+ + +S +L + K Sbjct: 480 EPAQPSLPPAQATVTKLEGGNNAQAIADQLIGQNQKTGDLNWSGDASLPEPSSPLAVKME 539 Query: 528 DLRLLHMIEINEERFAKILRKWARSEIED 556 L L + R A+++ W D Sbjct: 540 HLSL--LANQEPARVAEVIAHWIGDTEHD 566 >gi|317008990|gb|ADU79570.1| flagellar MS-ring protein [Helicobacter pylori India7] Length = 567 Score = 359 bits (922), Expect = 7e-97, Method: Composition-based stats. Identities = 123/548 (22%), Positives = 238/548 (43%), Gaps = 29/548 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEV 57 +L +++ FF + +I ++A+ +L+ +L + Y L+ L+ Sbjct: 6 LLQRIVDFFIKLNK--KQKIALIATGVLITALLVFLLLYPFKEKDYAQGGYGVLFEGLDS 63 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 SD I L + I +++S + +I +P V + RI LA+QG+P +S G+E+FD Sbjct: 64 SDNALILQHLQQNQIPYKVSKD-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFDTK 121 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 + FG T F Q I +RA+EGE++RTI+S++ I+ A VHI +P F P+ASVM+ Sbjct: 122 D-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180 Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232 + I++L+AAAVP L +V +++ G+ + + + + + L Sbjct: 181 KLKPDMKLSPTQILGIKNLIAAAVPKLTTDNVKIVNENGESIGEGDILENSKELALEQLH 240 Query: 233 IVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 Q ++ +E I LA +G N + V AE + ++ + +DP++ V L Sbjct: 241 YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE 300 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + + + Q V N+ V K + E +K + +NYE+ + Sbjct: 301 EKKEGASKKQVGGVPGVVSNIGPVQGLKD--NKEPEKYEKSQNTTNYEVGKTISEIKGEF 358 Query: 352 YKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 L RL+ AVVV+ L + + D L +IN +V A G N RGD + + Sbjct: 359 GTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLQKINALVKQAIGYNQNRGDDVAV 418 Query: 409 TSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463 ++ +F + ++ T+ M + + + +++ +++ + R+ Sbjct: 419 SNFEFNPMAPMIDNATLSEKIMHKTQKVLGSFTPLIKYVLVFIVLFIFYKKVIVPFSERM 478 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRIN 520 + + EV G + D + L+++ + + +I Sbjct: 479 LEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIILEKIR 538 Query: 521 SYVSKQSD 528 + ++ D Sbjct: 539 GTLKERPD 546 >gi|163744330|ref|ZP_02151690.1| flagellar M-ring protein FliF [Oceanibulbus indolifex HEL-45] gi|161381148|gb|EDQ05557.1| flagellar M-ring protein FliF [Oceanibulbus indolifex HEL-45] Length = 567 Score = 359 bits (921), Expect = 7e-97, Method: Composition-based stats. Identities = 146/571 (25%), Positives = 253/571 (44%), Gaps = 24/571 (4%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++Q+++ + LG R+ +L + L + +P Y +Y +L +++ Sbjct: 1 MNQIVE---NLKDLGPKRLALLGGIGLAITAAVFIGARTILAPTYVPVYSQLSPGTASQM 57 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L +A + +S NG +ISV + + +AR+ LA GLP G+E+FD ++ G+ Sbjct: 58 MQTLEQAGLTVDLSRNGDTISVAENDIARARMALADAGLPGEGVP-GWEIFDNMSGMGMN 116 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--AIN 181 SFMQ++ R+RALEGE+AR+IQ+ISGI AARVH+V+P+ +F + A + SV++R A Sbjct: 117 SFMQKVNRLRALEGELARSIQTISGIKAARVHLVLPERAAFSRSRAEASGSVIVRSQANA 176 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEI 241 A+AI+ LVA+AV +L+ +VTVL ++G+ + A + + I+ ++ Sbjct: 177 SMTRSQAQAIQALVASAVADLEAQNVTVLSASGETILAKDDGGSSDFSLQGQRSMIEEQL 236 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + L A +G N R V +L + + +DP +V RSI + +ET Sbjct: 237 AQKVESILNARVGPGNARVRVSVDLTTEREVRVSRTFDPAQQVARSIET-RVRNSNETDP 295 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 V V N+P + +E NYEI + + +ER+S+AV Sbjct: 296 ATGTVDVANNIPDELRDDAGGGAGQSTRSENDEIINYEIGSVQSEMVREPGDIERISVAV 355 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 +VN T G + + + ++++VS A G + RGD + + S+ FL+ S Sbjct: 356 LVNGSYGTLPDGSEGYIERSEEEMQRLSQLVSTAIGFDQNRGDQVQVDSLQFLDFDSEFS 415 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR---------RLHNIDDAKKG 472 +L+ + T++ +L L ++ LG LR A Sbjct: 416 NPGGRGLGAVLADNAMTILRSLFALALVAIIMLLGARPLRMVLDATLPQPALAGAGADAA 475 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQ--------DIFSHSRNLQSRINSYVS 524 +GG S P + T P + + + Q D + + V Sbjct: 476 LLGGPEEDSAPKALTGGTQNEPPQNRLPTPAGAQTGAVLGPMDEMPRDMVQLASVEGAVH 535 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + E N E ++L W E Sbjct: 536 HSKLRAVAELAEDNAEDALRVLGDWLAEGDE 566 >gi|89072278|ref|ZP_01158857.1| flagellar M-ring protein [Photobacterium sp. SKA34] gi|89051810|gb|EAR57262.1| flagellar M-ring protein [Photobacterium sp. SKA34] Length = 582 Score = 359 bits (921), Expect = 7e-97, Method: Composition-based stats. Identities = 123/565 (21%), Positives = 235/565 (41%), Gaps = 43/565 (7%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + L + S R L+L++V+ + + + +S +Y LY + E D I Sbjct: 29 MKNLKNLWHSS-----QRNLVLSAVLAAIVAAIIVVALWSSSQNYRPLYGQQERFDSGEI 83 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L I +R+ + + V S V K R+ LAA+G+ + +G + + +S G + Sbjct: 84 ISVLETEGIPYRLQEANGQVLVAESEVAKIRMLLAAKGI-KAKLPTGLDSLKEDSSLGTS 142 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAINP 182 FM+ LEGE+ RTI ++ I ARVH+ +P F + A PTASVM+ Sbjct: 143 QFMETARYRHGLEGELVRTIIALDAIANARVHLAIPRKTLFVRHNAEAPTASVMVELKPG 202 Query: 183 SVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIVQAI 237 K EAI +LV +V + +V+V+D G+LL+A+ + K L + + Sbjct: 203 EDLKTEQVEAIINLVTGSVTGMKTENVSVVDQYGRLLSADIGSAEMGKVNAKYLDYQKNL 262 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 ++++ L +G N+R V A+L+ Q + V D V+ R+ ++ Sbjct: 263 ENQVIQRAADMLTPIVGPSNYRVQVAADLDFSHVQETKEVVDSTPVVKNEHRIENNSID- 321 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 + N P V+ + S ++ E Y + + T + KL +L Sbjct: 322 --NIALGVPGSLSNKPPVTGEEENKD-SKNTNERTEINRQYALGSSVRHTQYQQGKLNKL 378 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 +++V++N + ++ +I+ ++ A GI++ RGD+++I S +F Sbjct: 379 NVSVLLNSTAAPNG------KAWTEAETQQISNMIKDAVGISADRGDSLSILSFNFTPIA 432 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL---HNIDDAKKGEV 474 + + TV L +++G +L + LR+L D ++ E+ Sbjct: 433 IDAPPAIPWW-------QDPTVQQPLRYMIGGILGLSMIFFVLRKLISHLTGLDRRRDEL 485 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIAL---------DSSNQDIFSHSRNLQSRINSYVSK 525 + ++ T L D++N + + L + + + Sbjct: 486 TFAEEDTAHSYDESLQTREEQEHEETLNERLAAKGIDATNNAFNASNDLLPPQGSPLEIQ 545 Query: 526 QSDLRLLHMIEINEERFAKILRKWA 550 L+L + ER A++L++W Sbjct: 546 LKHLQL--ISTEEPERVAEVLKQWV 568 >gi|325995631|gb|ADZ51036.1| Flagellar M-ring protein [Helicobacter pylori 2018] gi|325997227|gb|ADZ49435.1| Flagellar MS-ring protein [Helicobacter pylori 2017] Length = 567 Score = 359 bits (921), Expect = 8e-97, Method: Composition-based stats. Identities = 123/548 (22%), Positives = 237/548 (43%), Gaps = 29/548 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEV 57 +L +++ FF + +I ++A+ +L+ +L + Y L+ +L+ Sbjct: 6 LLQRIVDFFIKLNK--KQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFERLDS 63 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 SD I L + I +++ + +I VP V + RI LA+QG+P +S G+E+FD Sbjct: 64 SDNALILQHLQQNQIPYKVLKD-DTILVPKDKVYEERITLASQGIPKTSK-VGFEIFDTK 121 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 + FG T F Q I +RA+EGE++RTI+S++ I+ A VHI +P F P+ASVM+ Sbjct: 122 D-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180 Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232 + I++L+AAAVP L + +V +++ G+ + + + + + L Sbjct: 181 KLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLR 240 Query: 233 IVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 Q ++ +E I LA +G N + V AE + ++ + +DP++ V L Sbjct: 241 YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE 300 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + + + Q V N+ V K + E +K + +NYE+ + Sbjct: 301 EKKEGAPKKQVGGVPGVVSNIGPVQGLKD--NKEPEKYEKSQNTTNYEVGKTISEIKGEF 358 Query: 352 YKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 L RL+ AVVV+ + + D L +IN +V A G N RGD + + Sbjct: 359 GTLVRLNAAVVVDGKYKIAFKDGANALEYEPLSDESLKKINALVKQAIGYNQNRGDDVAV 418 Query: 409 TSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463 ++ +F + ++ T M + + + +++ +++ + R+ Sbjct: 419 SNFEFNPMAPMIDNATFSEKIMHKTQKILGSFTPLIKYILVFIVLFIFYKKVIVPFSERM 478 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRIN 520 + + EV G + D + L++S + + +I Sbjct: 479 LEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNASFSEEEVRYEIILEKIR 538 Query: 521 SYVSKQSD 528 + ++ D Sbjct: 539 GTLKERPD 546 >gi|188527156|ref|YP_001909843.1| flagellar MS-ring protein [Helicobacter pylori Shi470] gi|188143396|gb|ACD47813.1| flagellar MS-ring protein [Helicobacter pylori Shi470] gi|308061699|gb|ADO03587.1| flagellar MS-ring protein [Helicobacter pylori Cuz20] Length = 567 Score = 359 bits (921), Expect = 9e-97, Method: Composition-based stats. Identities = 123/548 (22%), Positives = 238/548 (43%), Gaps = 29/548 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEV 57 +L +++ FF + +I ++A+ +L+ +L + Y L+ +L+ Sbjct: 6 LLQRIVDFFIKLNK--KQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFERLDS 63 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 SD I L + I ++I + +I +P V + RI LA+QG+P +S G+E+FD Sbjct: 64 SDNALILQHLQQNQIPYKILKD-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFDTK 121 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 + FG T F Q I +RA+EGE++RTI+S++ I+ A VHI +P F P+ASVM+ Sbjct: 122 D-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180 Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232 + I++L+AAAVP L +V +++ G+ + + + + + L Sbjct: 181 KLKPDMKLSPTQILGIKNLIAAAVPKLTTENVKIVNENGESIGEGDILENSKELALEQLR 240 Query: 233 IVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 Q ++ +E I LA +G N + V AE + ++ + +DP++ V L Sbjct: 241 YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQRKSTKETFDPNNVVRSEQNLE 300 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + + + Q V N+ V K + E +K + +NYE+ + Sbjct: 301 EKKEGAPKKQVGGVPGVVSNIGPVQGLKD--NKEPEKYEKSQNTTNYEVGKTISEIKGEF 358 Query: 352 YKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 L RL+ AVVV+ L + + D L +IN +V A G N RGD + + Sbjct: 359 GTLVRLNAAVVVDGKYKIVLKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDDVAV 418 Query: 409 TSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463 ++ +F + ++ T+ M + + + +++ +++ + R+ Sbjct: 419 SNFEFNPMAPMLDNATLSEKIMHKTQKILGSFTPLIKYILVFIVLFIFYKKVIVPFSERM 478 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRIN 520 + + EV G + D + L+++ + + +I Sbjct: 479 LEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIVLEKIR 538 Query: 521 SYVSKQSD 528 + ++ D Sbjct: 539 GTLKERPD 546 >gi|89068713|ref|ZP_01156099.1| putative flagellar M-ring protein [Oceanicola granulosus HTCC2516] gi|89045676|gb|EAR51738.1| putative flagellar M-ring protein [Oceanicola granulosus HTCC2516] Length = 562 Score = 358 bits (920), Expect = 9e-97, Method: Composition-based stats. Identities = 147/563 (26%), Positives = 257/563 (45%), Gaps = 18/563 (3%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + + SLG+ R++ LA+ + + V +P Y LY L S ++ Sbjct: 1 MQSIINNLMSLGQRRLIALAATGIGLTAALLLGVGAVLAPTYAPLYSGLSPSGAAQVVGT 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L +A +S +G+ +SVP S + +AR+ LA QGLP G+ELFD G+ SFM Sbjct: 61 LEQAGFRVDVSADGTMVSVPDSDLARARMALADQGLPDEGVP-GWELFDNSTGLGMNSFM 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV-- 184 Q I R+RALEGE+AR+IQ+I + +ARVH+V+P+ +F + P+ASV++RA S Sbjct: 120 QRINRLRALEGELARSIQTIDAVDSARVHLVLPEREAFSRARPEPSASVIVRASGRSEIG 179 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN 244 A AIR+LVAAAVP+L VTVL ++G+ + A++ E S+ +++ + + Sbjct: 180 RNQARAIRNLVAAAVPDLAPSRVTVLSASGETILADDGEPGSDVSLQSVRASLEDRMSRS 239 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 I++ L+A +G N R V +L + Q I + YDP+ +V RS + +T + Sbjct: 240 IDQILSARVGAGNARVQVSVDLTTERQVILQQSYDPNQRVVRSTETRNETVE-DTQAGQD 298 Query: 305 AVTVEQNMPHVSDRKV-PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 V N+P + + N +E NYEI + + +E++S+AV+V Sbjct: 299 QVDAAGNLPEALGGEAEGSTGARSNRTAADEIVNYEIGSTRSEVIREPGDVEKISVAVLV 358 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 N G + + + + ++V +A G +++RGDT+++ S+ F++ + Sbjct: 359 NGIYNRLPNGDVEYEERPPEEIERLTRLVESAVGYDAQRGDTVSVESLRFMDYSMELGDG 418 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 +L + + + L + LV G+ L G + +P Sbjct: 419 TGGGIGQLLLGNASAAMRGLFAIGIVALVMLFGVRPLATRLTARQEPDGLIAQSPDGAPL 478 Query: 484 PISSAVTTGLMPNDNIALDS-------SNQDIFSHSRNLQ------SRINSYVSKQSDLR 530 P A + +++ R Q + +N V + Sbjct: 479 PAVRPAEAAPGAPRPAAGAGAEGVSAMPDAELYDPLRGAQGEYVNLAAVNGSVQRNRLQA 538 Query: 531 LLHMIEINEERFAKILRKWARSE 553 + ++E+ ++LR W E Sbjct: 539 IGELVEVEPAESLRVLRTWLAQE 561 >gi|153001452|ref|YP_001367133.1| flagellar MS-ring protein [Shewanella baltica OS185] gi|217972616|ref|YP_002357367.1| flagellar MS-ring protein [Shewanella baltica OS223] gi|304409960|ref|ZP_07391579.1| flagellar M-ring protein FliF [Shewanella baltica OS183] gi|307302327|ref|ZP_07582085.1| flagellar M-ring protein FliF [Shewanella baltica BA175] gi|151366070|gb|ABS09070.1| flagellar M-ring protein FliF [Shewanella baltica OS185] gi|217497751|gb|ACK45944.1| flagellar M-ring protein FliF [Shewanella baltica OS223] gi|304351369|gb|EFM15768.1| flagellar M-ring protein FliF [Shewanella baltica OS183] gi|306914365|gb|EFN44786.1| flagellar M-ring protein FliF [Shewanella baltica BA175] Length = 560 Score = 358 bits (920), Expect = 9e-97, Method: Composition-based stats. Identities = 111/551 (20%), Positives = 222/551 (40%), Gaps = 28/551 (5%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 + + R + + + + + L + + P Y L K+E ++ ++ L + + Sbjct: 25 NLGGVDMMRQVTMILALAICLALAVFVMLWAQEPEYRPL-GKMETQEMVQVLDVLDKNKV 83 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 ++I + I VP + ++ L+ G+ S + + ++ + FG++ M++ Sbjct: 84 KYQIDVD--VIKVPEDKYQEVKMMLSRAGV--DSPAASQDFLNQDSGFGVSQRMEQARLK 139 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV-YKSAEAI 191 + E +AR I+ + + A+V + +P F + ++P+A+V+I + +AI Sbjct: 140 HSQEENLARAIEQLQSVSRAKVILALPKENVFARNASKPSATVVINTRRGGLGQGEVDAI 199 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEMNINKAL 249 +VA+AV L+ VTV DS G+LL + + + L +VQ + E I L Sbjct: 200 VDIVASAVQGLEPSRVTVTDSNGRLLNSGSQDGASATARRELELVQQKEAEYRTKIESIL 259 Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309 LG DNF S V ++ + Y+PD RS ++ +S Sbjct: 260 VPILGPDNFTSQVDVSMDFTAVEQTSKRYNPDLPSLRSEMTVENNTTGGSS--GGIPGAL 317 Query: 310 QNMPHV-----SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 N P + D + +E N+E++T T + R+S++V V+ Sbjct: 318 SNQPPMESNIPQDATKATESATAGNSHREATRNFELDTTISHTRQQVGAVRRISVSVAVD 377 Query: 365 -KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 K G+ A + + L I +++ A G +S+RGD + + ++ F++ + + Sbjct: 378 FKPGAAGENGQVARVARTEQELTNIRRLLEGAVGFSSQRGDVLEVVTVPFMDQLVEDLPA 437 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG--GKSILS 481 +++ R I ALV LV L V L+RL D E G G + Sbjct: 438 LELWEQPWFWRAIKLGIGALVILVLILAV---VRPMLKRLIYPDSVNMPEDGRLGNELAE 494 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 +A T G+ L++ + N + + ++ E Sbjct: 495 IEDQYAADTLGM-------LNTQEAEYSYADDGSIHIPNLHKDDDMIKAIRALVANEPEL 547 Query: 542 FAKILRKWARS 552 ++++ W + Sbjct: 548 STQVVKNWLQD 558 >gi|126175128|ref|YP_001051277.1| flagellar MS-ring protein [Shewanella baltica OS155] gi|125998333|gb|ABN62408.1| flagellar M-ring protein FliF [Shewanella baltica OS155] Length = 560 Score = 358 bits (920), Expect = 1e-96, Method: Composition-based stats. Identities = 111/551 (20%), Positives = 221/551 (40%), Gaps = 28/551 (5%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 + + R + + + + + L + + P Y L K+E ++ ++ L + + Sbjct: 25 NLGGVDMMRQVTMILALAICLALAVFVMLWAQEPEYRPL-GKMETQEMVQVLDVLDKNKV 83 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 ++I + I VP + ++ L+ G+ S + + ++ + FG++ M++ Sbjct: 84 KYQIDVD--VIKVPEDKYQEVKMMLSRAGV--DSPAASQDFLNQDSGFGVSQRMEQARLK 139 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV-YKSAEAI 191 + E +AR I+ + + A+V + +P F + ++P+A+V+I + +AI Sbjct: 140 HSQEENLARAIEQLQSVSRAKVILALPKENVFARNASKPSATVVINTRRGGLGQGEVDAI 199 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEMNINKAL 249 +VA+AV L+ VTV DS G+LL + + + L +VQ + E I L Sbjct: 200 VDIVASAVQGLEPSRVTVTDSNGRLLNSGSQDGASATARRELELVQQKEAEYRTKIESIL 259 Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309 LG DNF S V ++ + Y+PD RS ++ +S Sbjct: 260 VPILGPDNFTSQVDVSMDFTAVEQTSKRYNPDLPALRSEMTVENNTTGGSS--GGIPGAL 317 Query: 310 QNMPHV-----SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 N P + D +E N+E++T T + R+S++V V+ Sbjct: 318 SNQPPMESNIPQDATKATESVTAGNSHREATRNFELDTTISHTRQQVGAVRRISVSVAVD 377 Query: 365 -KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 K G+ A + + L I +++ A G +S+RGD + + ++ F++ + + Sbjct: 378 FKPGAAGENGQVARVARTEQELTNIRRLLEGAVGFSSQRGDVLEVVTVPFMDQLVEDLPA 437 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG--GKSILS 481 +++ R I ALV LV L V L+RL D E G G + Sbjct: 438 LELWEQPWFWRAIKLGIGALVILVLILAV---VRPMLKRLIYPDSVNMPEDGRLGNELAE 494 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 +A T G+ L++ + N + + ++ E Sbjct: 495 IEDQYAADTLGM-------LNTQEAEYSYADDGSIHIPNLHKDDDMIKAIRALVANEPEL 547 Query: 542 FAKILRKWARS 552 ++++ W + Sbjct: 548 STQVVKNWLQD 558 >gi|119469985|ref|ZP_01612790.1| flagellar M-ring protein [Alteromonadales bacterium TW-7] gi|119446695|gb|EAW27968.1| flagellar M-ring protein [Alteromonadales bacterium TW-7] Length = 571 Score = 358 bits (920), Expect = 1e-96, Method: Composition-based stats. Identities = 100/558 (17%), Positives = 224/558 (40%), Gaps = 23/558 (4%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 +Q + S + R + L + + + + + + P L K++ ++ Sbjct: 27 EQKSGYLSSLNGVDLLRQVTLVIALGICLAIAIFIIIWARQPDMRPL-GKMQTEELIETL 85 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L I++++ +G+ + VP + ++ + +GL SG ++ + FG++ Sbjct: 86 DFLDAQKIEYQV--DGNVVLVPETEYQNIKLLMTREGL-EQGPTSGSDIIMQDMGFGVSQ 142 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 ++ E ++ARTI+ ++ I ARV + +P F + +P+A+V++ Sbjct: 143 RLERERLKHGREQQLARTIEELNNITRARVLLAIPKENVFARREKKPSATVVLTLKRGRS 202 Query: 185 Y--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHE 240 + +++ +VA+AV L+ VTV D G+LL + K I + + E Sbjct: 203 LDSEEVDSVVDMVASAVQGLEPARVTVTDQNGRLLNSGSQTSLAARSRKEYDIERKREQE 262 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I+ L +G+ N+ + V ++ + + Y+PD RS ++ + Sbjct: 263 YLEKIDSILIPVVGLANYTAQVDLSMDFSAVEETQKRYNPDLPAVRSETTFEENNIGGLA 322 Query: 301 QP-----ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 + V N+P V+ + + + KE NYE++T + Sbjct: 323 VGIPGALTNQPPVNSNIPEVAGQGGAGSATSPSRTHKEATRNYELDTTISHKRQQTGVIR 382 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 R+S++V V+ G + + L+ I +++ G + +RGD + + ++ F+ Sbjct: 383 RISVSVAVDYIPKVGENGETTMTPRSVEELSNIRRLLQGGVGFDMQRGDALEVVTVPFVR 442 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 +V + D + V+ ALV +V L+ + L+RL DD + E Sbjct: 443 EATDFDISVPLWEQDWFMKIIRLVLGALVIIV---LIMAVVKPMLKRLIYPDDTLE-EYD 498 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 ++ + I + L + + A + D +L + + + ++ Sbjct: 499 EDALSAGVDIGDSTLDMLNKDFDSASIGFSSDGTLQLPDLHGDEDLLKA------IRALV 552 Query: 536 EINEERFAKILRKWARSE 553 E +++++ W + Sbjct: 553 ANEPELSSQVVKAWLTED 570 >gi|261839198|gb|ACX98963.1| flagellar M-ring protein FliF [Helicobacter pylori 52] Length = 567 Score = 358 bits (920), Expect = 1e-96, Method: Composition-based stats. Identities = 123/548 (22%), Positives = 239/548 (43%), Gaps = 29/548 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEV 57 +L +++ FF + +I ++A+ +L+ +L + Y L+ +L+ Sbjct: 6 LLQRIVDFFIKLNK--KQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFERLDS 63 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 SD I L + I ++I + +I +P V + RI LA+QG+P +S G+E+FD Sbjct: 64 SDNALILQHLQQNQIPYKILKD-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFDTK 121 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 + FG T F Q I +RA+EGE++RTI+S++ I+ A VHI +P F P+ASVM+ Sbjct: 122 D-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180 Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232 + I++L+AAAVP L + +V +++ G+ + + + + + L Sbjct: 181 KLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLR 240 Query: 233 IVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 Q ++ +E I LA +G N + V AE + ++ + +DP++ V L Sbjct: 241 YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE 300 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + + + Q V N+ V K + E +K + +NYE+ + Sbjct: 301 EKKEGAPKKQVGGVPGVVSNIGPVQGLKD--NKEPEKYEKSQNTTNYEVGKTISEIKGEF 358 Query: 352 YKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 L RL+ AVVV+ L + + D L +IN +V A G N RGD + + Sbjct: 359 GTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDDVAV 418 Query: 409 TSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463 ++ +F + ++ T+ M + + + +++ +++ + R+ Sbjct: 419 SNFEFNPMAPMLDNATLSEKIMHKTQKVLGSFTPLIKYILVFIVLFIFYKKVIVPFSERM 478 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRIN 520 + + EV G + D + L+++ + + +I Sbjct: 479 LEVMPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIILEKIR 538 Query: 521 SYVSKQSD 528 + ++ D Sbjct: 539 GTLKERPD 546 >gi|15611393|ref|NP_223044.1| flagellar MS-ring protein [Helicobacter pylori J99] gi|4154846|gb|AAD05899.1| FLAGELLAR M-RING PROTEIN [Helicobacter pylori J99] Length = 567 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 124/548 (22%), Positives = 239/548 (43%), Gaps = 29/548 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEV 57 +L +++ FF + +I ++A+ +L+ +L + Y L+ +L+ Sbjct: 6 LLQRIVDFFIKLNK--KQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFERLDS 63 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 SD I L + I +++ + +I VP V + RI LA+QG+P +S G+E+FD Sbjct: 64 SDNALILQHLQQNQIPYKVLKD-DTILVPKDKVYEERITLASQGIPKTSK-VGFEIFDTK 121 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 + FG T F Q I +RA+EGE++RTI+S++ I+ A VHI +P F P+ASVM+ Sbjct: 122 D-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180 Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232 + I++L+AAAVP L + +V +++ G+ + + + + + L Sbjct: 181 KLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLR 240 Query: 233 IVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 Q ++ +E I LA +G N + V AE + ++ + +DP++ V L Sbjct: 241 YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE 300 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + + + Q V N+ V K + E +K + +NYE+ + Sbjct: 301 EKKEGAPKKQVGGVPGVVSNIGPVQGLKD--NKEPEKYEKSQNTTNYEVGKTISEIKGEF 358 Query: 352 YKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 L RL+ AVVV+ L + + D L +IN +V A G N RGD + + Sbjct: 359 GTLVRLNAAVVVDGKYKIALEDGANALEYEPLSDESLKKINALVKQAIGYNQNRGDDVAV 418 Query: 409 TSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463 ++ +F + ++ T+ M + + + +++ +++ + R+ Sbjct: 419 SNFEFNPMAPMIDNATLSEKIMHKTQKILGSFTPLIKYILVFIVLFIFYKKVIVPFSERM 478 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRIN 520 + + EV G + D + L++S + + +I Sbjct: 479 LEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNASFSEEEVRYEIILEKIR 538 Query: 521 SYVSKQSD 528 + ++ D Sbjct: 539 GTLKERPD 546 >gi|167623379|ref|YP_001673673.1| flagellar MS-ring protein [Shewanella halifaxensis HAW-EB4] gi|167353401|gb|ABZ76014.1| flagellar M-ring protein FliF [Shewanella halifaxensis HAW-EB4] Length = 566 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 108/529 (20%), Positives = 220/529 (41%), Gaps = 29/529 (5%) Query: 37 MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIH 96 + + P Y L ++ +++ ++ L + + I G + VP R+ Sbjct: 53 VFVMIWAQEPEYRPL-GQMSTAEMVQVLDVLDNNQVKYEIQ--GDVVKVPEDKFQDVRML 109 Query: 97 LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHI 156 L+ +GL ++ +N+ + +K + FG++ M++ + E +AR I+ + + A+V + Sbjct: 110 LSREGLDNTDANN--DFLNKDSGFGVSQRMEQARLKHSQEQNLARIIEELKSVTRAKVIL 167 Query: 157 VMPDMGSFRKIGARPTASVMIRAIN-PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 +P F + ++P+A+V++ + ++I +VA+AV NL+ VTV D+ G+ Sbjct: 168 ALPKENVFARNRSKPSATVVVSTRRSGLSQEEVDSIVDIVASAVHNLEPNKVTVTDANGR 227 Query: 216 LLTAN--EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI 273 LL + + I + L IVQ + E + L LG +NF S V ++ + Sbjct: 228 LLNSGTQDGSSAIARRELEIVQQKESEYRNKVESILMPILGPENFTSQVDVSMDFTAVEQ 287 Query: 274 REIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN----- 328 Y+PD RS + ++ TS N P ++ + E Sbjct: 288 TAKRYNPDLPSLRSEMVVENNSNGGTS--GGIPGALSNQPPMASDIPQEVNAEETVTRNS 345 Query: 329 -TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT-EVLGRSADQGKIDSYLA 386 + KE N+E++T T L R+S++V V+ G + + LA Sbjct: 346 GSTHKEATRNFELDTTISHTRQQIGTLRRVSVSVAVDFKNAPMAEDGSVNRVPRTEQELA 405 Query: 387 EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFL 446 I +++ A G N++RGD I + ++ F++ + + ++ R V+ ALV L Sbjct: 406 NIRRLLEGAVGFNTQRGDVIEVVTVPFMDQLIEAAPAPELWEQPWFWRVLRLVLGALVIL 465 Query: 447 VGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLM--PNDNIALDSS 504 V L V L L +++ + + GG+ + +A T G++ P + Sbjct: 466 VLILAVVRPMLKKLVYPDSVNMPDEPQRGGE-LAEIEDQYAADTLGMLQRPEAEYSYADD 524 Query: 505 NQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + + I + + ++ E ++++ W + Sbjct: 525 GSILIPNLHKDDDMIKA---------IRALVANEPELSTQVVKNWLLED 564 >gi|91223211|ref|ZP_01258477.1| flagellar M-ring protein [Vibrio alginolyticus 12G01] gi|91192024|gb|EAS78287.1| flagellar M-ring protein [Vibrio alginolyticus 12G01] Length = 570 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 121/557 (21%), Positives = 233/557 (41%), Gaps = 31/557 (5%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 +L Q + S R L+L++V+ + + + +S + LY + E D+ I Sbjct: 21 KLKQIWSSS-----QRNLVLSAVLAAIVAAIIVVALWSSSQSFRPLYSQQERFDIGEIVS 75 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L + +R+ + + VP V K R+ LA++G+ + +G + + +S G + F Sbjct: 76 VLESEGVSYRMQEQNGQVLVPEGEVAKVRMLLASKGV-KAKLPTGLDSLKEDSSLGTSQF 134 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAINPSV 184 M+ LEGE+ RTI S++ + ARVH+ +P F + + P+ASVM+ Sbjct: 135 METARYRHGLEGELVRTIMSLNSVANARVHLAIPRQTLFVRQNSENPSASVMLELKPGED 194 Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIVQAIQH 239 K EAI +LV +V + V+V+D G+LL+A+ K L ++++ Sbjct: 195 LKPEQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLSADVASAEAGKVNAKYLEYQKSVEK 254 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 +I L +G NFR V A+L+ + + + D ++ V R+ + + Sbjct: 255 QIIQRAADMLTPIVGPSNFRVQVAADLDFSQVEETQEILD-NAPVVRNEHTIHNNSVDQI 313 Query: 300 SQPESAVTVEQNMPHVSD-RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 + N P V+ +V S + E Y + + T + ++E+LS Sbjct: 314 AL--GVPGSLSNQPPVTGSGEVETSDSQNTNARSEVNRQYAVGSSVRRTQYQQGQIEKLS 371 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 ++V++N + + ++ +I+ ++ A GI++ RGD++++ S +F ++ Sbjct: 372 VSVLLNSKASPDGV------AWSEADKEQISNMIMDAVGISATRGDSLSLMSFNFTPIEI 425 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 + + + VI L+ L + F L L D E+ Sbjct: 426 DAPPALPWWQDPTVQQPIRYVIGGLL----GLAMIFFVLRPLIMHLTGVDKPVPELNFAE 481 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL----LHM 534 P + T ++ + ++ S S L + S L + L + Sbjct: 482 PQEEPDYENLQTREEREHEEVLDRRLSEKGISASSGLDVNSDMLPPAGSPLEIQLKHLQL 541 Query: 535 IE-INEERFAKILRKWA 550 I ER A+IL++W Sbjct: 542 IANEEPERVAEILKQWV 558 >gi|317181691|dbj|BAJ59475.1| flagellar MS-ring protein [Helicobacter pylori F57] Length = 567 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 123/548 (22%), Positives = 238/548 (43%), Gaps = 29/548 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEV 57 +L +++ FF + +I ++A+ +L+ +L + Y L+ +L+ Sbjct: 6 LLQRIVDFFIKLNK--KQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFERLDS 63 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 SD I L + I ++I + +I +P V + RI LA+QG+P +S G+E+FD Sbjct: 64 SDNALILQHLQQNQIPYKILKD-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFDTK 121 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 + FG T F Q I +RA+EGE++RTI+S++ I+ A VHI +P F P+ASVM+ Sbjct: 122 D-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180 Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232 + I++L+AAAVP L +V +++ G+ + + + + + L Sbjct: 181 KLKPDMKLSPTQILGIKNLIAAAVPKLTTENVKIVNENGESIGEGDILENSKELALEQLR 240 Query: 233 IVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 Q ++ +E I LA +G N + V AE + ++ + +DP++ V L Sbjct: 241 YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE 300 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + + + Q V N+ V K + E +K + +NYE+ + Sbjct: 301 EKKEGTPKKQVGGVPGVVSNIGPVQGLKD--NKEPEKYEKSQNTTNYEVGKTISEIKGEF 358 Query: 352 YKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 L RL+ AVVV+ L + + D L +IN +V A G N RGD + + Sbjct: 359 GTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDDVAV 418 Query: 409 TSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463 ++ +F + ++ T+ M + + + +++ +++ + R+ Sbjct: 419 SNFEFNPMAPMLDNATLSEKIMHKTQKVLGSFTPLIKYILAFIVLFIFYKKVIVPFSERM 478 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRIN 520 + + EV G + D + L+++ + + +I Sbjct: 479 LEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIVLEKIR 538 Query: 521 SYVSKQSD 528 + ++ D Sbjct: 539 GTLKERPD 546 >gi|210134543|ref|YP_002300982.1| flagellar MS-ring protein [Helicobacter pylori P12] gi|210132511|gb|ACJ07502.1| flagellar basal-body M-ring protein [Helicobacter pylori P12] Length = 567 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 126/580 (21%), Positives = 245/580 (42%), Gaps = 41/580 (7%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEV 57 +L +++ FF + +I ++A+ +L+ +L + Y L+ L+ Sbjct: 6 LLQRIVDFFIKLNK--KQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFEGLDS 63 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 SD I L + I +++S + +I +P V + RI LA+QG+P +S G+E+FD Sbjct: 64 SDNALILQHLQQNQIPYKVSRD-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFDTK 121 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 + FG T F Q I +RA+EGE++RTI+S++ I+ A VHI +P F P+ASVM+ Sbjct: 122 D-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180 Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232 + I++L+AAAVP L + +V +++ G+ + + + + + L Sbjct: 181 KLNPDMKLSPTQILGIKNLIAAAVPKLTIDNVKIVNENGESIGEGDILENSKELALEQLH 240 Query: 233 IVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 Q ++ +E I LA +G N + V AE + ++ + +DP++ V L Sbjct: 241 YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE 300 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + + + Q V N+ V K + E +K + +NYE+ + Sbjct: 301 EKKEGAPKKQVGGVPGVVSNIGPVQGLKD--NKEPEKYEKSQNTTNYEVGKTISEIKGEF 358 Query: 352 YKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 L RL+ AVVV+ L + + D L +IN +V A G N RGD + + Sbjct: 359 GTLVRLNAAVVVDGKYKIALKDGANALEYEPLSDESLKKINALVKQAIGYNQNRGDDVAV 418 Query: 409 TSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463 ++ +F + ++ T+ M + + + +++ +++ + R+ Sbjct: 419 SNFEFNPMVPVIDNATLSEKIMHKTQKILGSFTPLIKYVLVFIVLFIFYKKVIVPFSERM 478 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRIN 520 + + EV G + D + L+++ + + +I Sbjct: 479 LEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIILEKIR 538 Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560 + + A + + + EI T+ Sbjct: 539 GTLK------------ERPDEIAMLFKLLIKDEISSDSTK 566 >gi|317010623|gb|ADU84370.1| flagellar MS-ring protein [Helicobacter pylori SouthAfrica7] Length = 567 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 122/548 (22%), Positives = 241/548 (43%), Gaps = 29/548 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEV 57 +L +++ FF + +I ++A+ +L+ ++ + +Y L+ +L+ Sbjct: 6 LLQRIVDFFIKLNK--KQKIALIAAGVLITALIVFLLIYPFKEKNYVQGGYGVLFERLDP 63 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 SD I L + I +++S + +I +P V + RI LA+QG+P +S G+E+FD Sbjct: 64 SDNALILQHLQQNQIPYKVSKD-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFDTK 121 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 + FG T F Q I +RA+EGE++RTI+S++ I+ A VHI +P F P+ASVM+ Sbjct: 122 D-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180 Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232 + I++L+AAAVP L + +V +++ G+ + + + + + L Sbjct: 181 KIKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLH 240 Query: 233 IVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 Q ++ +E I LA +G N + V AE + ++ + +DP++ V L Sbjct: 241 YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE 300 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + + + Q V N+ V K + E +K + +NYE+ + Sbjct: 301 EKKEGTPKKQIGGVPGVVSNIGPVQGLKDNKEQ--EKYEKSQNTTNYEVGKTISEIKGEF 358 Query: 352 YKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 L RL+ AVVV+ L + + D L +IN +V A G N RGD + + Sbjct: 359 GTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLQKINALVKQAIGYNQNRGDDVAV 418 Query: 409 TSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463 ++ +F + ++ T+ M + + + +++ +++ + R+ Sbjct: 419 SNFEFNPMAPMIDNATLSEKIMRKTQKVLGSFTPLIKYVLVFIVLFIFYKKVIVPFSERM 478 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRIN 520 + + EV G + D + L+++ + + +I Sbjct: 479 LEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIILEKIR 538 Query: 521 SYVSKQSD 528 + ++ D Sbjct: 539 GTLKERPD 546 >gi|261837785|gb|ACX97551.1| flagellar basal-body M-ring protein [Helicobacter pylori 51] Length = 567 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 126/580 (21%), Positives = 244/580 (42%), Gaps = 41/580 (7%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEV 57 +L +++ FF + +I ++A+ +L+ +L + Y L+ +L+ Sbjct: 6 LLQRIVDFFIKLNK--KQKIALIAAGVLITTLLVFLLLYPFKEKDYAQGGYGVLFERLDS 63 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 SD I L + I ++I + +I +P V + RI LA+QG+P +S G+E+FD Sbjct: 64 SDNALILQHLQQNQIPYKILKD-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFDTK 121 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 + FG T F Q I +RA+EGE++RTI+S++ I+ A VHI +P F P+ASVM+ Sbjct: 122 D-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180 Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232 + I++L+AAAVP L +V +++ G+ + + + + + L Sbjct: 181 KLKPDMKLSPTQILGIKNLIAAAVPKLTTENVKIVNENGESIGEGDILENSKELALEQLR 240 Query: 233 IVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 Q ++ +E I LA +G N + V AE + ++ + +DP++ V L Sbjct: 241 YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE 300 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + + + Q V N+ V K + E +K + +NYE+ + Sbjct: 301 EKKEGAPKKQVGGVPGVVSNIGPVQGLKD--NKEPEKYEKSQNTTNYEVGKTISEIKGEF 358 Query: 352 YKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 L RL+ AVVV+ L + + D L +IN +V A G N RGD + + Sbjct: 359 GTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDDVAV 418 Query: 409 TSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463 ++ +F + ++ T+ M + + + +++ +++ + R+ Sbjct: 419 SNFEFNPMAPMLDNATLSEKIMHKTQKVLGSFTPLIKYILVFIVLFIFYKKVIVPFSERM 478 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRIN 520 + + EV G + D + L+++ + + +I Sbjct: 479 LEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIVLEKIR 538 Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560 + + A + + + EI T+ Sbjct: 539 GTLK------------ERPDEIAMLFKLLIKDEISSDSTK 566 >gi|315586339|gb|ADU40720.1| flagellar M-ring protein FliF [Helicobacter pylori 35A] Length = 567 Score = 358 bits (919), Expect = 2e-96, Method: Composition-based stats. Identities = 124/548 (22%), Positives = 238/548 (43%), Gaps = 29/548 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEV 57 +L +++ FF + +I ++A+ +L+ +L + Y L+ +L+ Sbjct: 6 LLQRIVDFFIKLNK--KQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFERLDS 63 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 SD I L + I ++I + +I +P V + RI LA+QG+P +S G+E+FD Sbjct: 64 SDNALILQHLQQNQIPYKILKD-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFDTK 121 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 + FG T F Q I +RA+EGE++RTI+S++ I+ A VHI +P F P+ASVM+ Sbjct: 122 D-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180 Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232 + I++L+AAAVP L +V +++ G+ + + + + + L Sbjct: 181 KLKPDMKLSPTQILGIKNLIAAAVPKLTTENVKIVNENGESIGEGDILENSKELALEQLR 240 Query: 233 IVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 Q ++ +E I LA +G N + V AE + ++ + +DP++ V L Sbjct: 241 YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE 300 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + + + Q V N+ V K + E +K + +NYE+ + Sbjct: 301 EKKEGAPKKQVGGVPGVVSNIGPVQGLKD--NKEPEKYEKSQNTTNYEVGKTISEIKGEF 358 Query: 352 YKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 L RL+ AVVV+ L + + D L +IN +V A G N RGD + + Sbjct: 359 GTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDDVAV 418 Query: 409 TSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463 ++ +F + N+ T+ M + + + +++ +++ + R+ Sbjct: 419 SNFEFNPMAPMLNNATLSEKIMHKTQKVLGSFTPLIKYILVFIVLFIFYKKVIVPFSERM 478 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRIN 520 + + EV G + D + L+++ + + +I Sbjct: 479 LEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIVLEKIR 538 Query: 521 SYVSKQSD 528 + ++ D Sbjct: 539 GTLKERPD 546 >gi|160876177|ref|YP_001555493.1| flagellar MS-ring protein [Shewanella baltica OS195] gi|160861699|gb|ABX50233.1| flagellar M-ring protein FliF [Shewanella baltica OS195] gi|315268373|gb|ADT95226.1| flagellar M-ring protein FliF [Shewanella baltica OS678] Length = 560 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 111/551 (20%), Positives = 221/551 (40%), Gaps = 28/551 (5%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 + + R + + + + + L + + P Y L K+E ++ ++ L + + Sbjct: 25 NLGGVDMMRQVTMILALAICLALAVFVMLWAQEPEYRPL-GKMETQEMVQVLDVLDKNKV 83 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 ++I + I VP + ++ L+ G+ S + + ++ + FG++ M++ Sbjct: 84 KYQIDVD--VIKVPEDKYQEVKMMLSRAGV--DSPAASQDFLNQDSGFGVSQRMEQARLK 139 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV-YKSAEAI 191 + E +AR I+ + + A+V + +P F + ++P+A+V+I + +AI Sbjct: 140 HSQEENLARAIEQLQSVSRAKVILALPKENVFARNASKPSATVVINTRRGGLGQGEVDAI 199 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEMNINKAL 249 +VA+AV L+ VTV DS G+LL + + + L +VQ + E I L Sbjct: 200 VDIVASAVQGLEPSRVTVTDSNGRLLNSGSQDGASATARRELELVQQKEAEYRTKIESIL 259 Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309 LG DNF S V ++ + Y+PD RS ++ +S Sbjct: 260 VPILGPDNFTSQVDVSMDFTAVEQTSKRYNPDLPSLRSEMTVENNTTGGSS--GGIPGAL 317 Query: 310 QNMPHV-----SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 N P + D +E N+E++T T + R+S++V V+ Sbjct: 318 SNQPPMESNIPQDATKATESVTAGNSHREATRNFELDTTISHTRQQVGAVRRISVSVAVD 377 Query: 365 -KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 K G+ A + + L I +++ A G +S+RGD + + ++ F++ + + Sbjct: 378 FKPGAAGENGQVARVARTEQELTNIRRLLEGAVGFSSQRGDVLEVVTVPFMDQLVEDLPA 437 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG--GKSILS 481 +++ R I ALV LV L V L+RL D E G G + Sbjct: 438 LELWEQPWFWRAIKLGIGALVILVLILAV---VRPMLKRLIYPDSVSMPEDGRLGNELAE 494 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 +A T G+ L++ + N + + ++ E Sbjct: 495 IEDQYAADTLGM-------LNTQEAEYSYADDGSIHIPNLHKDDDMIKAIRALVANEPEL 547 Query: 542 FAKILRKWARS 552 ++++ W + Sbjct: 548 STQVVKNWLQD 558 >gi|167626144|ref|YP_001676438.1| flagellar MS-ring protein [Shewanella halifaxensis HAW-EB4] gi|167356166|gb|ABZ78779.1| flagellar M-ring protein FliF [Shewanella halifaxensis HAW-EB4] Length = 572 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 121/575 (21%), Positives = 228/575 (39%), Gaps = 44/575 (7%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L+ L Q + + R +++ + + + Y LY E + + I Sbjct: 22 LNSLKQKWHQFSRGDRH--AATLAILAIVAACVIVLMLWSTGQGYSPLYGNQENVETSHI 79 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L I +R+ I VP VG AR+ LAA+G+ + SG E D ++ G + Sbjct: 80 IEVLEAEGISYRLDPTSGLILVPEDRVGNARMVLAARGV-KAKVPSGMESLDS-SAIGTS 137 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAINP 182 FM++ +LEGE++RTI ++ + ARVH+ +P F + P+ASVM+ Sbjct: 138 QFMEQAKYRYSLEGELSRTIMALKSVKTARVHLAIPKKTLFIRQQPELPSASVMLDLYAG 197 Query: 183 S--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQA 236 + +I +LVA +V + V ++D G L+ AN+ K L Q Sbjct: 198 QHLQPEQITSIANLVAGSVTGMTPERVQIVDQEGNHLSSEINANQDLTQARDKQLQYTQE 257 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 ++ + + L LG DNF+ V A +N + + DP + V + + + Sbjct: 258 LEQSLINRASSMLQPILGQDNFQVQVAALVNFNQVEETRESLDPQTVV---SQEKQSTNQ 314 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 + N P +D S N ++E +E+ T + +LE Sbjct: 315 TSGDMALGIPGALSNQPPTADAATNNSTSNLN---QQESRQFEVGRSVKHTRYQQMQLEN 371 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 LSI+V++N + + G L +++ +V A G ++ RGD +I+S +F Sbjct: 372 LSISVLLNNQA-------AGETGWTQPQLDQMSTMVQDAIGYSAARGDQFSISSFNFAPV 424 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL-----HNIDDAKK 471 ++ + + L + +G +L + LR L ++ K Sbjct: 425 KIAEFEPLPWW-------QGESYQAYLRYFIGAILGLGMIFFVLRPLVQHLTRTVEHNIK 477 Query: 472 GEVGGKSILSPPPISSAV-----TTGLMPNDNIALDSSN-QDIFSHSRNLQSRINSYVSK 525 + L PP ++ ++ +AL+++N ++ + NL + + + Sbjct: 478 DTLPSTQPLMPPAEAATAHLSQDAAQEAADNLVALNNANINSNWTSNLNLPAPGSPLTVQ 537 Query: 526 QSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560 L L + R A+++ W ++ T Sbjct: 538 MEHLSL--LANQEPARVAEVISHWISDRDSEQNTH 570 >gi|217033359|ref|ZP_03438790.1| hypothetical protein HP9810_9g112 [Helicobacter pylori 98-10] gi|216944300|gb|EEC23725.1| hypothetical protein HP9810_9g112 [Helicobacter pylori 98-10] gi|317177162|dbj|BAJ54951.1| flagellar MS-ring protein [Helicobacter pylori F16] gi|317179256|dbj|BAJ57044.1| flagellar MS-ring protein [Helicobacter pylori F30] gi|332673195|gb|AEE70012.1| flagellar M-ring protein FliF [Helicobacter pylori 83] Length = 567 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 123/548 (22%), Positives = 238/548 (43%), Gaps = 29/548 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEV 57 +L +++ FF + +I ++A+ +L+ +L + Y L+ +L+ Sbjct: 6 LLQRIVDFFIKLNK--KQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFERLDS 63 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 SD I L + I ++I + +I +P V + RI LA+QG+P +S G+E+FD Sbjct: 64 SDNALILQHLQQNQIPYKILKD-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFDTK 121 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 + FG T F Q I +RA+EGE++RTI+S++ I+ A VHI +P F P+ASVM+ Sbjct: 122 D-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180 Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232 + I++L+AAAVP L +V +++ G+ + + + + + L Sbjct: 181 KLKPDMKLSPTQILGIKNLIAAAVPKLTTENVKIVNENGESIGEGDILENSKELALEQLR 240 Query: 233 IVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 Q ++ +E I LA +G N + V AE + ++ + +DP++ V L Sbjct: 241 YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE 300 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + + + Q V N+ V K + E +K + +NYE+ + Sbjct: 301 EKKEGAPKKQVGGVPGVVSNIGPVQGLKD--NKEPEKYEKSQNTTNYEVGKTISEIKGEF 358 Query: 352 YKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 L RL+ AVVV+ L + + D L +IN +V A G N RGD + + Sbjct: 359 GTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDDVAV 418 Query: 409 TSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463 ++ +F + ++ T+ M + + + +++ +++ + R+ Sbjct: 419 SNFEFNPMAPMLDNATLSEKIMHKTQKVLGSFTPLIKYILVFIVLFIFYKKVIVPFSERM 478 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRIN 520 + + EV G + D + L+++ + + +I Sbjct: 479 LEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIVLEKIR 538 Query: 521 SYVSKQSD 528 + ++ D Sbjct: 539 GTLKERPD 546 >gi|269965409|ref|ZP_06179529.1| flagellar M-ring protein [Vibrio alginolyticus 40B] gi|269830055|gb|EEZ84284.1| flagellar M-ring protein [Vibrio alginolyticus 40B] Length = 583 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 121/557 (21%), Positives = 233/557 (41%), Gaps = 31/557 (5%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 +L Q + S R L+L++V+ + + + +S + LY + E D+ I Sbjct: 34 KLKQIWSSS-----QRNLVLSAVLAAIVAAIIVVALWSSSQSFRPLYSQQERFDIGEIVS 88 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L + +R+ + + VP V K R+ LA++G+ + +G + + +S G + F Sbjct: 89 VLESEGVSYRMQEQNGQVLVPEGEVAKVRMLLASKGV-KAKLPTGLDSLKEDSSLGTSQF 147 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAINPSV 184 M+ LEGE+ RTI S++ + ARVH+ +P F + + P+ASVM+ Sbjct: 148 METARYRHGLEGELVRTIMSLNSVANARVHLAIPRQTLFVRQNSENPSASVMLELKPGED 207 Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIVQAIQH 239 K EAI +LV +V + V+V+D G+LL+A+ K L ++++ Sbjct: 208 LKPEQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLSADVASAEAGKVNAKYLEYQKSVEK 267 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 +I L +G NFR V A+L+ + + + D ++ V R+ + + Sbjct: 268 QIIQRAADMLTPIVGPSNFRVQVAADLDFSQVEETQEILD-NAPVVRNEHTIHNNSVDQI 326 Query: 300 SQPESAVTVEQNMPHVSD-RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 + N P V+ +V S + E Y + + T + ++E+LS Sbjct: 327 AL--GVPGSLSNQPPVTGSGEVETNDSQNTNARSEVNRQYAVGSSVRRTQYQQGQIEKLS 384 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 ++V++N + + ++ +I+ ++ A GI++ RGD++++ S +F ++ Sbjct: 385 VSVLLNSKASPDGV------AWSEADKEQISNMIMDAVGISATRGDSLSLMSFNFTPIEI 438 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 + + + VI L+ L + F L L D E+ Sbjct: 439 DAPPALPWWQDPTVQQPIRYVIGGLL----GLAMIFFVLRPLIMHLTGVDKPVPELNFAE 494 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL----LHM 534 P + T ++ + ++ S S L + S L + L + Sbjct: 495 PQEEPDYENLQTREEREHEEVLDRRLSEKGISASSGLDVNSDMLPPAGSPLEIQLKHLQL 554 Query: 535 IE-INEERFAKILRKWA 550 I ER A+IL++W Sbjct: 555 IANEEPERVAEILKQWV 571 >gi|209545569|ref|YP_002277798.1| flagellar MS-ring protein [Gluconacetobacter diazotrophicus PAl 5] gi|209533246|gb|ACI53183.1| flagellar M-ring protein FliF [Gluconacetobacter diazotrophicus PAl 5] Length = 547 Score = 357 bits (917), Expect = 2e-96, Method: Composition-based stats. Identities = 129/551 (23%), Positives = 232/551 (42%), Gaps = 16/551 (2%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + LGR ++ L V + + F LY +++ + + Sbjct: 1 MQNILAGLKGLGRKQLAALGGAAAVLLTILGFLVFQGGGQTMALLYGDVDLGEAAEMIDD 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L++A+I S +G+SI VP V AR+ LA GLP S GYELFDK + T F Sbjct: 61 LAKAHISSTTSPDGTSIYVPRDKVASARLLLAKDGLP-SGGAVGYELFDKSGTLTSTQFE 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS--V 184 Q I RA+EGE+ R+I+ + G+ RVH+V+P F + ASV++ Sbjct: 120 QTINETRAMEGELERSIRLVHGVRNVRVHLVLPHRDLFSTQTSPSQASVVLDIGRAGRMA 179 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL---SIVQAIQHEI 241 +AI++LVAAAVP L +++++D+ G +L + G+ + A + + Sbjct: 180 PDGIQAIQNLVAAAVPGLRPQNISIVDTRGDVLVKPGDPDSAAGQESTIEKLQHAEEQRL 239 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 ++ L LG + R+ + D + YDP+ +V RS + + D + + Sbjct: 240 AQDVEDMLVPTLGAGHVRARAAVTMATDEIHETDESYDPNQQVLRSEQTTSDKSVNTEAS 299 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 P TV N+P+ + + S + D++E+ +NYEI + + ++ R+S+AV Sbjct: 300 PN--TTVSNNLPNANANQDNKTGSSD--DREEDTNNYEIGKRVRVISQTRPRVSRISLAV 355 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 +V+ + G+ Q + + I + A G + RGD + + SM F+ + Sbjct: 356 MVDGMVTRDKNGKDVWQPLDTAEIQNITTLAKTAIGYDQSRGDEVNVVSMRFMPDGGLGF 415 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 T S + + ++ ++ L F+G+ + R I+ G Sbjct: 416 PTSTGSVLS--RDTLIYIAEWVIPIILALGAIFIGIRPMLRRGAINLPALA-AGHLQEGL 472 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 P A G + N+ + I S I + ++ ++ IE + + Sbjct: 473 PGIAGHA---GRIGNEMTGALIPSAHIGSDGTVSIDGIEGKMRAEAIAKVASRIEESTQE 529 Query: 542 FAKILRKWARS 552 I+R W Sbjct: 530 SVLIIRNWLAE 540 >gi|162147460|ref|YP_001601921.1| flagellar MS-ring protein [Gluconacetobacter diazotrophicus PAl 5] gi|161786037|emb|CAP55619.1| putative flagellar M-ring protein [Gluconacetobacter diazotrophicus PAl 5] Length = 547 Score = 357 bits (917), Expect = 2e-96, Method: Composition-based stats. Identities = 129/551 (23%), Positives = 233/551 (42%), Gaps = 16/551 (2%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + S LGR ++ L V + + F LY +++ + + Sbjct: 1 MQNILASLKGLGRKQLAALGGAAAVLLTILGFLVFQGGGQTMALLYGDVDLGEAAEMIDD 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L++A+I S +G+SI VP V AR+ LA GLP S GYELFDK + T F Sbjct: 61 LAKAHISSTTSPDGTSIYVPRDKVASARLLLAKDGLP-SGGAVGYELFDKSGTLTSTQFE 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS--V 184 Q I RA+EGE+ R+I+ + G+ RVH+V+P F + ASV++ Sbjct: 120 QTINETRAMEGELERSIRLVHGVRNVRVHLVLPHRDLFSTQTSPSQASVVLDIGRAGRMA 179 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL---SIVQAIQHEI 241 +AI++LVAAAVP L +++++D+ G +L + G+ + A + + Sbjct: 180 PDGIQAIQNLVAAAVPGLRPQNISIVDTRGDVLVKPGDPDSAAGQESTIEKLQHAEEQRL 239 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 ++ L LG + R+ + D + YDP+ +V RS + + D + + Sbjct: 240 AQDVEDMLVPTLGAGHVRARAAVTMATDEIHETDESYDPNQQVLRSEQTTSDKSVNTEAS 299 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 P TV N+P+ + + S + D++E+ +NYEI + + ++ R+S+AV Sbjct: 300 PN--TTVSNNLPNANANQDNKTGSSD--DREEDTNNYEIGKRVRVISQTRPRVSRISLAV 355 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 +V+ + G+ Q + + I + A G + RGD + + SM F+ + Sbjct: 356 MVDGMVTRDKNGKDVWQPLDTAEIQNITTLAKTAIGYDQSRGDEVNVVSMRFMPDGGLGF 415 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 T S + + ++ ++ L F+G+ + R I+ + L Sbjct: 416 PTSTGSVLS--RDTLIYIAEWVIPIILALGAIFIGIRPMLRRGAINLPALAAGHLQEGLP 473 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 A G + N+ + I S I + ++ ++ IE + + Sbjct: 474 GI----AGHAGRIGNEMTGALIPSAHIGSDGTVSIDGIEGKMRAEAIAKVASRIEESTQE 529 Query: 542 FAKILRKWARS 552 I+R W Sbjct: 530 SVLIIRNWLAE 540 >gi|307637039|gb|ADN79489.1| flagellar M-ring protein [Helicobacter pylori 908] Length = 567 Score = 357 bits (916), Expect = 3e-96, Method: Composition-based stats. Identities = 123/548 (22%), Positives = 237/548 (43%), Gaps = 29/548 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEV 57 +L +++ FF + +I ++A+ +L+ +L + Y L+ +L+ Sbjct: 6 LLQRIVDFFIKLNK--KQKIALIAAEVLITALLVFLLLYPFKEKDYAQGGYGVLFERLDS 63 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 SD I L + I +++ + +I VP V + RI LA+QG+P +S G+E+FD Sbjct: 64 SDNALILQHLQQNQIPYKVLKD-DTILVPKDKVYEERITLASQGIPKTSK-VGFEIFDTK 121 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 + FG T F Q I +RA+EGE++RTI+S++ I+ A VHI +P F P+ASVM+ Sbjct: 122 D-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180 Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232 + I++L+AAAVP L + +V +++ G+ + + + + + L Sbjct: 181 KLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLR 240 Query: 233 IVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 Q ++ +E I LA +G N + V AE + ++ + +DP++ V L Sbjct: 241 YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE 300 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + + + Q V N+ V K + E +K + +NYE+ + Sbjct: 301 EKKEGAPKKQVGGVPGVVSNIGPVQGLKD--NKEPEKYEKSQNTTNYEVGKTISEIKGEF 358 Query: 352 YKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 L RL+ AVVV+ + + D L +IN +V A G N RGD + + Sbjct: 359 GTLVRLNAAVVVDGKYKIAFKDGANALEYEPLSDESLKKINALVKQAIGYNQNRGDDVAV 418 Query: 409 TSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463 ++ +F + ++ T M + + + +++ +++ + R+ Sbjct: 419 SNFEFNPMAPMIDNATFSEKIMHKTQKILGSFTPLIKYILVFIVLFIFYKKVIVPFSERM 478 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRIN 520 + + EV G + D + L++S + + +I Sbjct: 479 LEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNASFSEEEVRYEIILEKIR 538 Query: 521 SYVSKQSD 528 + ++ D Sbjct: 539 GTLKERPD 546 >gi|317013789|gb|ADU81225.1| flagellar MS-ring protein [Helicobacter pylori Gambia94/24] Length = 567 Score = 357 bits (916), Expect = 3e-96, Method: Composition-based stats. Identities = 123/548 (22%), Positives = 239/548 (43%), Gaps = 29/548 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEV 57 +L +++ FF + +I ++A+ +L+ +L + Y L+ +L+ Sbjct: 6 LLQRIVDFFIKLNK--KQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFERLDS 63 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 SD I L + I +++ + +I +P V + RI LA+QG+P +S G+E+FD Sbjct: 64 SDNALILQHLQQNQIPYKVLKD-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFDTK 121 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 + FG T F Q I +RA+EGE++RTI+S++ I+ A VHI +P F P+ASVM+ Sbjct: 122 D-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180 Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232 + I++L+AAAVP L + +V +++ G+ + + + + + L Sbjct: 181 KLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLR 240 Query: 233 IVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 Q ++ +E I LA +G N + V AE + ++ + +DP++ V L Sbjct: 241 YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE 300 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + + + Q V N+ V K + E +K + +NYE+ + Sbjct: 301 EKKEGASKKQVGGVPGVVSNIGPVQGLKD--NKEPEKYEKSQNTTNYEVGKTISEIKGEF 358 Query: 352 YKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 L RL+ AVVV+ L + + D L +IN +V A G N RGD + + Sbjct: 359 GTLVRLNAAVVVDGKYKIALKDGANALEYEPLSDESLKKINALVKQAIGYNQNRGDDVAV 418 Query: 409 TSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463 ++ +F + ++ T+ M + + + +++ +++ + R+ Sbjct: 419 SNFEFNPMAPMIDNATLSEKIMHKTQKILGSFTPLIKYILVFIVLFIFYKKVIVPFSERM 478 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRIN 520 + + EV G + D + L++S + + +I Sbjct: 479 LEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNASFSEEEVRYEIILEKIR 538 Query: 521 SYVSKQSD 528 + ++ D Sbjct: 539 GTLKERPD 546 >gi|304392498|ref|ZP_07374438.1| flagellar M-ring protein FliF [Ahrensia sp. R2A130] gi|303295128|gb|EFL89488.1| flagellar M-ring protein FliF [Ahrensia sp. R2A130] Length = 535 Score = 357 bits (916), Expect = 3e-96, Method: Composition-based stats. Identities = 182/549 (33%), Positives = 295/549 (53%), Gaps = 41/549 (7%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 + + + LG R+ I+A + + + +F+ P ++ LYV L D+NRI ALS Sbjct: 18 RIWANLLQLGGRRLAIMAIAAMATMGTVGLSAWFLAQPTFETLYVGLARDDINRIGPALS 77 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 EA I + +S +G+S+ V + +AR LA +GLP SS SGYELFD + S GLTSFMQE Sbjct: 78 EAGIGYDVSSDGTSVLVQAGQAARARSILAERGLPRSSG-SGYELFDNLGSLGLTSFMQE 136 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA 188 +TRVRALEGEIAR+++SI GI ARVHIV PD SF + +ASV+I++ + + A Sbjct: 137 VTRVRALEGEIARSVRSIEGIQGARVHIVQPDRSSFSARNRQASASVLIQSNGRDIDRVA 196 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEIEMNINK 247 +A+RHLVAAAVP L +G+VTVLDS+G++L + +E + +L + + +++ + NI + Sbjct: 197 KAVRHLVAAAVPQLAVGNVTVLDSSGQVLASGDEPASSTADGALGMQRLVENRLSENIAR 256 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVT 307 L LG NFR AV A L+ D + E +YDP+S+VERSI++ + +SQ T Sbjct: 257 VLTPQLGASNFRVAVHAVLDTDQRTTSETIYDPESRVERSIKVVRTQDTDTSSQGGQTTT 316 Query: 308 VEQNMPHVSDRKVP-LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 VEQ++P + P S ++++EE +NYE+++K I++ + Y + +L+ +VVVN Sbjct: 317 VEQDIPEEQPAQANAGPSSNRESERREETTNYEMSSKRISSVRNGYSVSKLTASVVVN-- 374 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 SA + L + AA G+++ RGD I +++++F+ + T Sbjct: 375 -------ASALGAEPAVRLEALRASTQAAAGVDAGRGDVIDVSAVEFVTAADLAATTSSP 427 Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486 + + +V+ AL FL+ +LV + L + V G+ ++ P + Sbjct: 428 LLLQATA-QLGSVVKALAFLIALVLVLRFAIKPLVAAAASALSPPQSVEGEGAIAGPSNN 486 Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546 + + + P + RL +++ + ER A++L Sbjct: 487 TRLAGPMGPP----------------------------PSAADRLAALVDQDSERAAEVL 518 Query: 547 RKWARSEIE 555 R W R+ E Sbjct: 519 RSWVRAGEE 527 >gi|153836097|ref|ZP_01988764.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AQ3810] gi|260362945|ref|ZP_05775814.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus K5030] gi|260880232|ref|ZP_05892587.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AN-5034] gi|260895349|ref|ZP_05903845.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus Peru-466] gi|149750851|gb|EDM61596.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AQ3810] gi|308085629|gb|EFO35324.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus Peru-466] gi|308092563|gb|EFO42258.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AN-5034] gi|308112147|gb|EFO49687.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus K5030] Length = 571 Score = 357 bits (916), Expect = 3e-96, Method: Composition-based stats. Identities = 123/563 (21%), Positives = 239/563 (42%), Gaps = 38/563 (6%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + ++L Q + S R L+L++V+ + + + +S + LY + E D+ Sbjct: 18 VTNKLKQLWSSS-----QRNLVLSAVLAAIVAAIIVVALWSSSQSFRPLYSQQERFDIGE 72 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L + +R+ + + VP V + R+ LA++G+ + +G + + +S G Sbjct: 73 IVSVLESEGVSYRMQEQNGQVLVPEGEVARIRMLLASKGV-KAKLPTGLDSLKEDSSLGT 131 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI-GARPTASVMIRAIN 181 + FM+ LEGE+ RTI S++ + ARVH+ +P F + G P+ASVM+ Sbjct: 132 SQFMETARYRHGLEGELVRTIMSLNSVANARVHLAIPRQTLFVRQNGENPSASVMLELKP 191 Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIVQA 236 K EAI +L+ +V + V+V+D G+LL+A+ K L + Sbjct: 192 GEDLKPEQVEAIINLIVGSVTAMKPEFVSVIDQYGRLLSADVASAEAGKVNAKYLEYQKN 251 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 ++ +I L +G NFR V A+++ + + D ++ V R+ ++ Sbjct: 252 VEKQIIQRAADMLTPIVGPSNFRVQVAADMDFSQVEETREILD-NAPVVRNEHTIQNNSI 310 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 + + N P V+ + S + E Y + + T + ++E+ Sbjct: 311 DQIAL--GVPGSLSNQPPVT-GEAATNDSQNTNARSEVNRQYAVGSSVRRTQYQQGQIEK 367 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 LS++V++N + + D+ A+I+ +++ A GI++ RGD++++ S +F Sbjct: 368 LSVSVLLNSKASPDGV------AWSDADKAQISTMITDAVGISAARGDSLSLMSFNFTPI 421 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476 + ++ T + D TV L +++G +L + LR L V Sbjct: 422 DI-DAPTALPWWQD------PTVQQPLRYVIGGMLGLAMIFFVLRPLIMHLTGADKPVPE 474 Query: 477 KSILSPPPISSA----VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL- 531 + PP T ++ + ++ S S L + S L + Sbjct: 475 LNFAEPPQEEPDYDNLQTREEREHEEVLNRRLSEKGISASTGLDVNSDMLPPAGSPLEIQ 534 Query: 532 ---LHMIE-INEERFAKILRKWA 550 L +I ER A+IL++W Sbjct: 535 LKHLQLIANEEPERVAEILKQWV 557 >gi|328469325|gb|EGF40271.1| flagellar MS-ring protein [Vibrio parahaemolyticus 10329] Length = 571 Score = 357 bits (916), Expect = 3e-96, Method: Composition-based stats. Identities = 123/563 (21%), Positives = 238/563 (42%), Gaps = 38/563 (6%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + ++L Q + S R L+L++V+ + + + +S + LY + E D+ Sbjct: 18 VTNKLKQLWSSS-----QRNLVLSAVLAAIVAAIIVVALWSSSQSFRPLYSQQERFDIGE 72 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L + +R+ + + VP V + R+ LA++G+ + +G + + +S G Sbjct: 73 IVSVLESEGVSYRMQEQNGQVLVPEGEVARIRMLLASKGV-KAKLPTGLDSLKEDSSLGT 131 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI-GARPTASVMIRAIN 181 + FM+ LEGE+ RTI S++ + ARVH+ +P F + G P+ASVM+ Sbjct: 132 SQFMETARYRHGLEGELVRTIMSLNSVANARVHLAIPRQTLFVRQNGENPSASVMLELKP 191 Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIVQA 236 K EAI +L+ +V + V+V+D G+LL+A+ K L + Sbjct: 192 GEDLKSEQVEAIINLIVGSVTAMKPEFVSVIDQYGRLLSADVASAEAGKVNAKYLEYQKN 251 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 ++ +I L +G NFR V A+++ + + D ++ V R+ ++ Sbjct: 252 VEKQIIQRAADMLTPIVGPSNFRVQVAADMDFSQVEETREILD-NAPVVRNEHTIQNNSI 310 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 + + N P V+ S + E Y + + T + ++E+ Sbjct: 311 DQIAL--GVPGSLSNQPPVTGDAA-TNDSQNTNARSEVNRQYAVGSSVRRTQYQQGQIEK 367 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 LS++V++N + + D+ A+I+ +++ A GI++ RGD++++ S +F Sbjct: 368 LSVSVLLNSKASPDGV------AWSDADKAQISTMITDAVGISAARGDSLSLMSFNFTPI 421 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476 + ++ T + D TV L +++G +L + LR L V Sbjct: 422 DI-DAPTALPWWQD------PTVQQPLRYVIGGMLGLAMIFFVLRPLIMHLTGADKPVPE 474 Query: 477 KSILSPPPISSA----VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL- 531 + PP T ++ + ++ S S L + S L + Sbjct: 475 LNFAEPPQEEPDYDNLQTREEREHEEVLNRRLSEKGISASTGLDVNSDMLPPAGSPLEIQ 534 Query: 532 ---LHMIE-INEERFAKILRKWA 550 L +I ER A+IL++W Sbjct: 535 LKHLQLIANEEPERVAEILKQWV 557 >gi|117620247|ref|YP_855904.1| flagellar MS-ring protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561654|gb|ABK38602.1| flagellar M-ring protein FliF [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 560 Score = 357 bits (915), Expect = 3e-96, Method: Composition-based stats. Identities = 104/555 (18%), Positives = 214/555 (38%), Gaps = 31/555 (5%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 F S T + R LIL I + I +F+ + P L ++ + L + Sbjct: 21 FLSNTDVLRQITLILGLAICLAIAVFIL--LWGKEPDMRPLGT-YTTQELVKTLDYLDQQ 77 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS--SNSGYELFDKVNSFGLTSFMQE 128 I +++ +G S+ V + R+ L GL +++ ++ G ++ K +SFG++ M+ Sbjct: 78 KIPYQV--DGKSVLVSAENYSSIRLALTRAGLANATDTTSDGEDILLKDSSFGVSQRMES 135 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV-YKS 187 + E ++A I+ + A+V + +P F + +P+A+V++ ++ Sbjct: 136 ERLKLSRERQLASAIEQFQNVAKAQVLLAIPKDNVFARNERKPSATVVLSLKGNALGQGE 195 Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNI 245 ++I +VA+AV L+ VTV D G+LL + + K ++ Q + E + I Sbjct: 196 VDSIVDMVASAVHGLEPTRVTVTDQNGRLLNSGSQDPVSAQTRKEFAMQQKQELEYKQKI 255 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305 + L LG DN+ + V L+ Q+ Y+PD RS ++ S Sbjct: 256 DAILIPVLGADNYTAEVDLSLDFSQQEQTRKTYNPDLPAVRSEMTMEEN--SANGSNGGV 313 Query: 306 VTVEQNMPHVSDR--------KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 N P + S +KE N+E++T + R+ Sbjct: 314 PGALSNQPPAASNIPQQATGPNAETTASSSGRSRKEATRNFELDTTVSHIRRQMGGIRRM 373 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 +++V V+ T G+ + + L + +++S G + RGDT+ + ++ F + Sbjct: 374 TVSVAVDYKASTAADGKVTREPRTQPELDTLRRLLSGGLGFDVTRGDTLEVVAIPFNRPE 433 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 L + + R V A LV +L+ + L+RL D +GE+ Sbjct: 434 LESVAEAPLYEQPWFWR---AVRIAASVLVIIVLIVTVVRPMLKRLLYPDAKPEGELDFD 490 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 + + + + + + ++ Sbjct: 491 NHTVLGGDDELSLLAAQAESEPVFGVRDGHLKLPDLHRDEDL--------LKAVRALVAN 542 Query: 538 NEERFAKILRKWARS 552 + A+++++W + Sbjct: 543 EPDLAAQVIKEWVAN 557 >gi|149191163|ref|ZP_01869421.1| flagellar M-ring protein [Vibrio shilonii AK1] gi|148835001|gb|EDL51980.1| flagellar M-ring protein [Vibrio shilonii AK1] Length = 557 Score = 357 bits (915), Expect = 4e-96, Method: Composition-based stats. Identities = 132/526 (25%), Positives = 227/526 (43%), Gaps = 34/526 (6%) Query: 38 AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97 + ++ + LY K D +++ L E +I +++S + I VP V K R+ L Sbjct: 55 VIMLWTSAERFRPLYSKSANFDSSQVLQLLDEESIRYQLSQDDGQILVPEGDVAKIRMIL 114 Query: 98 AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 A++GL SG++ D S G + FM+ ALEGE+AR+I ++S + ARVH+ Sbjct: 115 ASKGL-KEQLPSGFDSLDSSKSLGESQFMENARYRHALEGELARSITTMSAVSLARVHLA 173 Query: 158 MPDMGSF-RKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTG 214 +P F R+ G +P ASV++ IN K E++ +LV+ AV L V V+D G Sbjct: 174 IPKESLFMREDGEQPRASVIVHIINGMDLKPTQVESVINLVSGAVIGLKSEHVRVVDQHG 233 Query: 215 KLLTANEMERNI---LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ 271 +LL+ + +I GK + ++ + L LG NFR + ++++ Sbjct: 234 RLLSNDATVGDITVTTGKQSDYKRNLERTLVAQATDMLTPILGASNFRVQIASDIDFSRI 293 Query: 272 QIREIVY-DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD 330 + E +Y DP V R L D S + N P V+D + P P + Sbjct: 294 EETEEIYADP---VVRKETLLNDVNESSMAL--GIPGALSNTPPVTDGE-PQPEPNAKVN 347 Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINK 390 + E +Y ++ K H L+ LS+++VVN +A+Q L + Sbjct: 348 RSETSRDYAVSGKVRHIQHQQGVLQNLSVSIVVNDLA-------NANQTWTPEELTNVEN 400 Query: 391 IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL 450 +V +A G + RGDTI IT F+ + + V F + ++ L +L+G + Sbjct: 401 VVRSAIGFSETRGDTIHITHFPFVVASIPDQAPV-AWFENT------NIMQPLKYLLGVM 453 Query: 451 LVTFLGLHALRRLH----NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQ 506 L + + LR L + ++ E + + +L Sbjct: 454 LSGLMIMVVLRPLAQYLTKSAEQEEQEAESMEYDDVITKEERAAEAALQSKLESLGIDAT 513 Query: 507 DIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 I + NL S + + L+L + + + R A+ILR W ++ Sbjct: 514 GIKALDDNLPSADSPLEVQIKHLKL--IAKEDPNRVAEILRTWIQA 557 >gi|330447943|ref|ZP_08311591.1| flagellar M-ring protein FliF [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492134|dbj|GAA06088.1| flagellar M-ring protein FliF [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 580 Score = 357 bits (915), Expect = 4e-96, Method: Composition-based stats. Identities = 119/562 (21%), Positives = 229/562 (40%), Gaps = 37/562 (6%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++ + + S R L+L++V+ + + + +S +Y LY + E D I Sbjct: 29 IENIKNLWDSS-----QRNLVLSAVLAAIVAAIIVVALWSSSQNYRPLYGQQERFDSGEI 83 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L I +R+ + + V V K R+ LAA+G+ + +G + + +S G + Sbjct: 84 ISVLETEGIPYRLQEANGQVLVAEGEVAKIRMLLAAKGI-KAKLPTGLDSLKEDSSLGTS 142 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAINP 182 FM+ LEGE+ RTI ++ I ARVH+ +P F + A PTASVM+ Sbjct: 143 QFMETARYRHGLEGELVRTIIALDAIANARVHLAIPRKTLFVRHNAEAPTASVMVELKPG 202 Query: 183 SVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIVQAI 237 K EAI +LV +V + +V+V+D G+LL+A+ + K L + + Sbjct: 203 EDLKTEQVEAIINLVTGSVTGMKTENVSVVDQYGRLLSADIGSTEMGKVNAKYLDYQKNL 262 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + ++ L +G N+R V A+L+ Q + V D V+ R+ ++ Sbjct: 263 EKQVIQRAADMLTPIVGPSNYRVQVAADLDFSHVQETKEVVDSAPVVKNEHRIENNSID- 321 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 + N P V+ + S ++ E Y + + T + KL +L Sbjct: 322 --NIALGVPGSLSNKPPVTGEEENKD-SKNTNERTEINRQYALGSSVRHTQYQQGKLNKL 378 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 +++V++N ++ +I+ ++ A GI++ RGD+++I S +F Sbjct: 379 NVSVLLNSTAAPNGS------AWTEAETQQISAMIKDAVGISADRGDSLSILSFNFTPIA 432 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 + + + + +I + L + F L L D + E+ Sbjct: 433 IEAPPAIPWWQDPTVQQPLRYMIGG----ILGLSMIFFVLRPLITHLTGLDRGRKELTFA 488 Query: 478 SILSPPPISSAVTTGLMPNDNIALD---------SSNQDIFSHSRNLQSRINSYVSKQSD 528 P + T +L+ S+N + + + L + + + Sbjct: 489 EEDIPQEYDENLKTRAEQEHEESLNERLAAKGIESANNALNASNDLLPPQGSPLEIQLKH 548 Query: 529 LRLLHMIEINEERFAKILRKWA 550 L+L + ER A++L++W Sbjct: 549 LQL--ISNEEPERVAEVLKQWV 568 >gi|315179670|gb|ADT86584.1| Flagellar biosynthesis/type III secretory pathway lipoprotein [Vibrio furnissii NCTC 11218] Length = 579 Score = 357 bits (915), Expect = 4e-96, Method: Composition-based stats. Identities = 120/568 (21%), Positives = 236/568 (41%), Gaps = 32/568 (5%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 +L Q + S R L+L++V+ + + + +S + LY + E DV I Sbjct: 30 KLKQLWSSS-----QRNLVLSAVLAAIVAALIVVALWSSSQSFRPLYGQQEQFDVGDIVS 84 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L +I +R+ + + VP V + R+ LAA+G+ + +G + + +S G + F Sbjct: 85 VLEAESISYRLQEQNGQVLVPEGEVARVRMLLAAKGI-KAKLPTGLDSLQEDSSLGTSQF 143 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI-GARPTASVMIRAINPSV 184 M+ LEGE+ RTI +++ + ARVH+ +P F + G P+ASVM+ Sbjct: 144 METARYRHGLEGELVRTIIALNAVSNARVHLAIPRQTLFVRQNGEAPSASVMLELKAGED 203 Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAIQH 239 K EAI +LV +V + V+V+D G+LL+A+ + K L + ++ Sbjct: 204 LKPEQVEAIINLVVGSVTGMKPEFVSVIDQYGRLLSADVASGDSGKVNAKYLDYQKNLEK 263 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 ++ L +G NFR V A+++ + + + D ++ V ++ ++ + Sbjct: 264 QVIQRAADMLTPIVGPSNFRVQVAADMDFSRVEETQEILD-NTPVVQNEHTVQNNSIDQI 322 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + N P V+ K P S + + E Y + + T + ++++L++ Sbjct: 323 AL--GIPGSLSNQPPVTGEK-PTQDSQNSNARSEINRQYAVGSSVRRTQYQQGQVKKLNV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 +V++N G D EI+ ++ A GI++ RGD++++ S +F ++ Sbjct: 380 SVLLNSAAAPNGTG------WSDQEKTEISAMLMDAVGISAARGDSLSLMSFNFTPIEIE 433 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 ++ + + VI L+ + + F L L D + E+ Sbjct: 434 APPSIPWWQDPTVQQPLRYVIGGLL----GMAMIFFVLRPLIMHLTGADRRSQELEFAPP 489 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL----LHMI 535 P + T ++ + S L + S L + L +I Sbjct: 490 PEEPYYENLQTREEREREDALNRRLEEKGIKASSGLDVSSDMLPPPGSPLEIQLKHLQLI 549 Query: 536 E-INEERFAKILRKWAR-SEIEDRYTQH 561 ER A++L++W +E + Sbjct: 550 ANEEPERVAEVLKQWVNVNEHSTVNAEP 577 >gi|260901174|ref|ZP_05909569.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AQ4037] gi|308109395|gb|EFO46935.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AQ4037] Length = 571 Score = 357 bits (915), Expect = 4e-96, Method: Composition-based stats. Identities = 123/563 (21%), Positives = 238/563 (42%), Gaps = 38/563 (6%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + ++L Q + S R L+L++V+ + + + +S + LY + E D+ Sbjct: 18 VTNKLKQLWSSS-----QRNLVLSAVLAAIVAAIIVVALWSSSQSFRPLYSQQERFDIGE 72 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L + +R+ + + VP V + R+ LA++G+ + +G + + +S G Sbjct: 73 IVSVLESEGVSYRMQEQNGQVLVPEGEVARIRMLLASKGV-KAKLPTGLDSLKEDSSLGT 131 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI-GARPTASVMIRAIN 181 + FM+ LEGE+ RTI S++ + ARVH+ +P F + G P+ASVM+ Sbjct: 132 SQFMETARYRHGLEGELVRTIMSLNSVANARVHLAIPRQTLFVRQNGETPSASVMLELKP 191 Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIVQA 236 K EAI +L+ +V + V+V+D G+LL+A+ K L + Sbjct: 192 GEDLKPEQVEAIINLIVGSVTAMKPEFVSVIDQYGRLLSADVASAEAGKVNAKYLEYQKN 251 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 ++ +I L +G NFR V A+++ + + D ++ V R+ ++ Sbjct: 252 VEKQIIQRAADMLTPIVGPSNFRVQVAADMDFSQVEETREILD-NAPVVRNEHTIQNNSI 310 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 + + N P V+ S + E Y + + T + ++E+ Sbjct: 311 DQIAL--GVPGSLSNQPPVTGDAA-TNDSQNTNARSEVNRQYAVGSSVRRTQYQQGQIEK 367 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 LS++V++N + + D+ A+I+ +++ A GI++ RGD++++ S +F Sbjct: 368 LSVSVLLNSKASPDGV------AWSDADKAQISTMITDAVGISAARGDSLSLMSFNFTPI 421 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476 + ++ T + D TV L +++G +L + LR L V Sbjct: 422 DI-DAPTALPWWQD------PTVQQPLRYVIGGMLGLAMIFFVLRPLIMHLTGADKPVPE 474 Query: 477 KSILSPPPISSA----VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL- 531 + PP T ++ + ++ S S L + S L + Sbjct: 475 LNFAEPPQEEPDYDNLQTREEREHEEVLNRRLSEKGISASTGLDVNSDMLPPAGSPLEIQ 534 Query: 532 ---LHMIE-INEERFAKILRKWA 550 L +I ER A+IL++W Sbjct: 535 LKHLQLIANEEPERVAEILKQWV 557 >gi|317180754|dbj|BAJ58540.1| flagellar MS-ring protein [Helicobacter pylori F32] Length = 567 Score = 357 bits (915), Expect = 4e-96, Method: Composition-based stats. Identities = 123/548 (22%), Positives = 239/548 (43%), Gaps = 29/548 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEV 57 +L +++ FF + +I ++A+ +L+ +L + Y L+ +L+ Sbjct: 6 LLQRIVDFFIKLNK--KQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFERLDS 63 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 SD I L + I ++I + +I +P V + RI LA+QG+P +S G+E+FD Sbjct: 64 SDNALILQHLQQNQIPYKILKD-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFDTK 121 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 + FG T F Q I +RA+EGE++RTI+S++ I+ A VHI +P F P+ASVM+ Sbjct: 122 D-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180 Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232 + I++L+AAAVP L + +V +++ G+ + + + + + L Sbjct: 181 KIKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLH 240 Query: 233 IVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 Q ++ +E I LA +G N + V AE + ++ + +DP++ V L Sbjct: 241 YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE 300 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + + + Q V N+ V K + E +K + +NYE+ + Sbjct: 301 EKKEGAPKKQVGGVPGVVSNIGPVQGLKD--NKEPEKYEKSQNTTNYEVGKTISEIKGEF 358 Query: 352 YKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 L RL+ AVVV+ L + + D L +IN +V A G N RGD + + Sbjct: 359 GTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDDVAV 418 Query: 409 TSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463 ++ +F + ++ T+ M + + + +++ +++ + R+ Sbjct: 419 SNFEFNPMAPMLDNATLSEKIMHKTQKVLGSFTPLIKYILVFIVLFIFYKKVIVPFSERM 478 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRIN 520 + + EV G + D + L+++ + + +I Sbjct: 479 LEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIVLEKIR 538 Query: 521 SYVSKQSD 528 + ++ D Sbjct: 539 GTLKERPD 546 >gi|297379568|gb|ADI34455.1| flagellar M-ring protein FliF [Helicobacter pylori v225d] Length = 567 Score = 357 bits (915), Expect = 4e-96, Method: Composition-based stats. Identities = 122/548 (22%), Positives = 238/548 (43%), Gaps = 29/548 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEV 57 +L +++ FF + +I ++A+ +L+ +L + Y L+ +L+ Sbjct: 6 LLQRIVDFFIKLNK--KQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFERLDS 63 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 SD I L + I ++I + +I +P V + RI LA+QG+P +S G+E+FD Sbjct: 64 SDNALILQHLQQNQIPYKILKD-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFDTK 121 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 + FG T F Q I +RA+EGE++RTI++++ I+ A VHI +P F P+ASVM+ Sbjct: 122 D-FGATDFDQNIKLIRAIEGELSRTIENLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180 Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232 + I++L+AAAVP L +V +++ G+ + + + + + L Sbjct: 181 KLKPDMKLSPTQILGIKNLIAAAVPKLTTENVKIVNENGESIGEGDILENSKELALEQLR 240 Query: 233 IVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 Q ++ +E I LA +G N + V AE + ++ + +DP++ V L Sbjct: 241 YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE 300 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + + + Q V N+ V K + E +K + +NYE+ + Sbjct: 301 EKKEGAPKKQVGGVPGVVSNIGPVQGLKD--NKEPEKYEKSQNTTNYEVGKTISEIKGEF 358 Query: 352 YKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 L RL+ AVVV+ L + + D L +IN +V A G N RGD + + Sbjct: 359 GTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDDVAV 418 Query: 409 TSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463 ++ +F + ++ T+ M + + + +++ +++ + R+ Sbjct: 419 SNFEFNPMVPMLDNATLSEKIMHKTQKVLGSFTPLIKYILVFIVLFIFYKKVIVPFSERM 478 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRIN 520 + + EV G + D + L+++ + + +I Sbjct: 479 LEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIVLEKIR 538 Query: 521 SYVSKQSD 528 + ++ D Sbjct: 539 GTLKERPD 546 >gi|269960163|ref|ZP_06174539.1| flagellar M-ring protein [Vibrio harveyi 1DA3] gi|269835134|gb|EEZ89217.1| flagellar M-ring protein [Vibrio harveyi 1DA3] Length = 583 Score = 357 bits (915), Expect = 4e-96, Method: Composition-based stats. Identities = 119/559 (21%), Positives = 234/559 (41%), Gaps = 31/559 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + ++L Q + S R L+L++V+ + + + +S + LY + E D+ Sbjct: 31 VTNKLKQLWSSS-----QRNLVLSAVLAAIVAAIIVVALWSSSQSFRPLYSQQERFDIGE 85 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L I +R+ + + VP V + R+ LA++G+ + +G + + +S G Sbjct: 86 IVSVLETEGISYRMQEQNGQVLVPEGEVARIRMLLASKGV-KAKLPTGLDSLKEDSSLGT 144 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAIN 181 + FM+ LEGE+ RTI S++ + ARVH+ +P F + P+ASVM+ Sbjct: 145 SQFMETARYRHGLEGELVRTIMSLNAVANARVHLAIPRQTLFVRQNTENPSASVMLELKP 204 Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIVQA 236 K EAI +LV +V + V+V+D G+LL+A+ K L ++ Sbjct: 205 GEDLKPEQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLSADVASAEAGKVNAKYLEYQKS 264 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 ++ +I L +G NFR V A++N + + + D ++ V R+ ++ Sbjct: 265 VEKQIIQRAADMLTPIVGPSNFRVQVAADMNFSQVEETQEILD-NAPVVRNEHTIQNNSV 323 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 + + N P V+ + P S + E Y + + T + ++E+ Sbjct: 324 DQIAL--GIPGSLSNQPPVT-GETPTNDSQNTNARSEINRQYAVGSSVRRTQYQQGQIEK 380 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 LS++V++N + + ++ +I+ ++ A GI++ RGD++++ S +F Sbjct: 381 LSVSVLLNSQAAPDGV------AWSEADKTQISTMIMDAVGISNTRGDSLSLMSFNFTPI 434 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476 ++ + + + VI ++ L + F L L D E+ Sbjct: 435 EIDAPPALPWWQDPTVQQPLRYVIGGML----GLAMIFFVLRPLIMHLTGADKPAPELEF 490 Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL----L 532 P + T + + ++ + S L + S L + L Sbjct: 491 AEPQVEPEYDNLQTREEREREEVLNRKLSEKGIAVSSGLDVNSDMLPPAGSPLEIQLKHL 550 Query: 533 HMIE-INEERFAKILRKWA 550 +I ER A+IL++W Sbjct: 551 QLIANEEPERVAEILKQWV 569 >gi|302392396|ref|YP_003828216.1| flagellar M-ring protein FliF [Acetohalobium arabaticum DSM 5501] gi|302204473|gb|ADL13151.1| flagellar M-ring protein FliF [Acetohalobium arabaticum DSM 5501] Length = 524 Score = 357 bits (915), Expect = 4e-96, Method: Composition-based stats. Identities = 140/564 (24%), Positives = 240/564 (42%), Gaps = 58/564 (10%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 +++Q+ + + + + + I A V ++ ++L + + P+Y L+ L + D Sbjct: 7 QMIEQVKELWNNLDTKAKVIISSSAIVSIIVLLL---VTNWASQPNYVTLFNDLTMKDAG 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I+ L E ID+++ +G+ ISVP+ V + R+ LA++GLP + G+E+FDK G Sbjct: 64 AITKQLDEKQIDYKLGADGTKISVPAQKVHQVRLDLASKGLPQKGA-VGFEIFDKNQ-LG 121 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 T F Q++ RAL GE+AR+I + + A+V I P + ASVM++ Sbjct: 122 STDFEQQVNFYRALSGELARSIMHLQNVKFAKVQISAPRESLYLDKKKVVKASVMLKMKE 181 Query: 182 --PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE------MERNILGKSLSI 233 K E I +LVA++V +L +VTV+D G LLTA + K L + Sbjct: 182 YAELDLKQVEGITNLVASSVEDLKPENVTVVDDRGNLLTAELNKEDKFNNTDFSPKLLEL 241 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRL 290 + +E +N L+ LG DN V A+LN D +Q+ Y+P D V RS + Sbjct: 242 ENDFESNMESELNTMLSKVLGPDNVVVRVNAKLNFDRRQMESRTYEPVNDDQGVVRSEQS 301 Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 ++ + + P E N+P N DK+E +NYEIN K T Sbjct: 302 TEVSYSGQGDTPSGVPGTESNIPGYE----GGEEQSSNYDKEETTTNYEINEKIETYTQV 357 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 +E++S+AV+V+K + I + V +A G ++ RGD ITIT+ Sbjct: 358 PGDVEKMSVAVMVDK-------------ELSPAQTESIRQSVESAVGYSAERGDQITITN 404 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 +F + + R + + + ++ FL L LR Sbjct: 405 FEFDRSLEKKMTAEMEAQKSAEQRRWIIIGIITILVLII---GFLILRRLR--------- 452 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPND-NIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 A G + ++ +D Q + + + K+ Sbjct: 453 ------------SGSGRAGDGGQGAEELDVVVDDQGQTETAATEEKELSPEERKRKEMKE 500 Query: 530 RLLHMIEINEERFAKILRKWARSE 553 + ++E E A++L+ W E Sbjct: 501 EISDLVEQQPEEVARLLKTWLAEE 524 >gi|163783983|ref|ZP_02178948.1| Flagellar M-ring protein [Hydrogenivirga sp. 128-5-R1-1] gi|159880743|gb|EDP74282.1| Flagellar M-ring protein [Hydrogenivirga sp. 128-5-R1-1] Length = 522 Score = 357 bits (915), Expect = 4e-96, Method: Composition-based stats. Identities = 123/524 (23%), Positives = 226/524 (43%), Gaps = 48/524 (9%) Query: 37 MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIH 96 + +Y LY L D ++ L E I +++ NGS I VP V R+ Sbjct: 39 FFIYSLSSKENYAVLYTNLSPEDAGQVLTVLQEEKIPYKVEGNGSIILVPKDKVYDVRLK 98 Query: 97 LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHI 156 LA++G+P S S G+E+FD+ G+T F + I +RALEGE+ RTI+ ++ ++ A+V+I Sbjct: 99 LASKGIP-SGSTVGFEIFDE-PKMGITQFQENINYIRALEGELERTIRQLNAVIDAKVNI 156 Query: 157 VMPDMGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTG 214 MP F + +P ASV+I+ + +AI LV+ AVP L +VTV D+ G Sbjct: 157 AMPKESIFAREEDQPKASVLIKLAPGKDLTPEQVKAIVFLVSRAVPKLKPENVTVADNRG 216 Query: 215 KLLTA--NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272 ++L+ E E K+L + + ++ +IE N+ L+ LG D E+ Sbjct: 217 RVLSDVLEETETAKADKTLQLKRKLERQIERNVQSMLSKALGSDKVVVRATVEVETGQLH 276 Query: 273 IREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332 ++ +YDPD S R K+ +++ N+P + D R L K+ Sbjct: 277 QKDELYDPDKVAIVSERRIKEEVKTKQKSEIGPPGTSTNVPPIMD--TGQDRYLVEKKKE 334 Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG--RLTEVLGRSADQ--GKIDSYLAEI 388 + NY+++ I + +K++++S+ V+++ + + G + + + L + Sbjct: 335 DRTRNYDVSKSIINKSQPIFKIKKVSVGVLIDGKYQEIKDKNGNVSYKFIPRSKEELKQY 394 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 +++ +A G + +RGD +TI S+ F DI + L+ Sbjct: 395 EELIKSAIGFDPKRGDKVTIVSVPF----EKKPEVAVKEKTDIRK----------IILLS 440 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 + + FL L + + KK E + P + T + Sbjct: 441 VIGILFLTLLLITLALILKARKKPETAVGYGIPPETLQGMATVREAEIEV---------- 490 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 + ++LL ++E N + A +++ W + Sbjct: 491 ------------GIEKEPEYIQLLKILEENPQIVANLVKTWIKE 522 >gi|29423531|gb|AAO73593.1| lateral flagellar FliF-like M-ring protein [Vibrio parahaemolyticus] Length = 584 Score = 356 bits (914), Expect = 5e-96, Method: Composition-based stats. Identities = 123/563 (21%), Positives = 238/563 (42%), Gaps = 38/563 (6%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + ++L Q + S R L+L++V+ + + + +S + LY + E D+ Sbjct: 31 VTNKLKQLWSSS-----QRNLVLSAVLAAIVAAIIVVALWSSSQSFRPLYSQQERFDIGE 85 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L + +R+ + + VP V + R+ LA++G+ + +G + + +S G Sbjct: 86 IVSVLESEGVSYRMQEQNGQVLVPEGEVARIRMLLASKGV-KAKLPTGLDSLKEDSSLGT 144 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI-GARPTASVMIRAIN 181 + FM+ LEGE+ RTI S++ + ARVH+ +P F + G P+ASVM+ Sbjct: 145 SQFMETARYRHGLEGELVRTIMSLNSVANARVHLAIPRQTLFVRQNGENPSASVMLELKP 204 Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIVQA 236 K EAI +L+ +V + V+V+D G+LL+A+ K L + Sbjct: 205 GEDLKPEQVEAIINLIVGSVTAMKPEFVSVIDQYGRLLSADVASAEAGKVNAKYLEYQKN 264 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 ++ +I L +G NFR V A+++ + + D ++ V R+ ++ Sbjct: 265 VEKQIIQRAADMLTPIVGPSNFRVQVAADMDFSQVEETREILD-NAPVVRNEHTIQNNSI 323 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 + + N P V+ S + E Y + + T + ++E+ Sbjct: 324 DQIAL--GVPGSLSNQPPVTGDAA-TNDSQNTNARSEVNRQYAVGSSVRRTQYQQGQIEK 380 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 LS++V++N + + D+ A+I+ +++ A GI++ RGD++++ S +F Sbjct: 381 LSVSVLLNSKASPDGV------AWSDADKAQISTMITDAVGISAARGDSLSLMSFNFTPI 434 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476 + ++ T + D TV L +++G +L + LR L V Sbjct: 435 DI-DAPTALPWWQD------PTVQQPLRYVIGGMLGLAMIFFVLRPLIMHLTGADKPVPE 487 Query: 477 KSILSPPPISSA----VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL- 531 + PP T ++ + ++ S S L + S L + Sbjct: 488 LNFAEPPQEEPDYDNLQTREEREHEEVLNRRLSEKGISASTGLDVNSDMLPPAGSPLEIQ 547 Query: 532 ---LHMIE-INEERFAKILRKWA 550 L +I ER A+IL++W Sbjct: 548 LKHLQLIANEEPERVAEILKQWV 570 >gi|149189866|ref|ZP_01868146.1| flagellar M-ring protein [Vibrio shilonii AK1] gi|148836352|gb|EDL53309.1| flagellar M-ring protein [Vibrio shilonii AK1] Length = 582 Score = 356 bits (914), Expect = 5e-96, Method: Composition-based stats. Identities = 119/562 (21%), Positives = 232/562 (41%), Gaps = 42/562 (7%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 ++ Q + S R L+L++V+ + + + +S Y LY + E D+ I Sbjct: 33 KVKQLWSSS-----QRNLVLSAVLAAIVAAIIVVALWSSSQSYRPLYSQQERFDIGEIVS 87 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L I +R+ + + V V K R+ LAA+G+ + +G + + +S G + F Sbjct: 88 VLESEGIAYRLQEQNGQVLVAEGQVAKIRMLLAAKGV-KAQLPTGLDSLKEDSSLGTSQF 146 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG-ARPTASVMIRAINPSV 184 M+ LEGE+ RTI S++ I ARVH+ +P F + P+ASVMI Sbjct: 147 MENARYRHGLEGELVRTIISLNAISNARVHLAIPRQTLFVRQQGEEPSASVMIELKPGED 206 Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIVQAIQH 239 K EAI +LV +V + V+V+D G+LL+A+ K L + ++ Sbjct: 207 LKPDQVEAIINLVVGSVTGMKPEFVSVIDQYGRLLSADVGSAEAGKVNAKYLEYQKNVEK 266 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 +I L +G N+R V A+++ + + + D + V + + Sbjct: 267 QIIQRAADMLTPIVGPSNYRVQVAADMDFSRVEETQEILDTNPVVRNEHSIQNNTID--- 323 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 N P V+ +VP S + E Y + + T + ++ +LS+ Sbjct: 324 KIALGIPGSLSNQPPVT-GEVPTNDSQNTNARSELNRQYAVGSSVRRTQYQQGQISKLSV 382 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 +V++N+ + A+I+ +++ A GI++ RGD++++ S +F ++ Sbjct: 383 SVLLNESAAPNGT------AWTPAERAQISTMITDAVGISADRGDSLSLMSFNFTPIEI- 435 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL-----------HNIDD 468 + + D TV L +++G +L + LR L + ++ Sbjct: 436 EAPPAMPWWQD------PTVQQPLRYVIGGMLGMAMIFFVLRPLIMHLTGADKRGNELEF 489 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 A+ E + + ++S++ + + S L + + Sbjct: 490 AEPQEEEYQENIQTREEREREEMLNRRLSEKGIESTSSGLDASSDMLPPPGSPLEIQLKH 549 Query: 529 LRLLHMIEINEERFAKILRKWA 550 L+L + ER A++L++W Sbjct: 550 LQL--IANEEPERVAEVLKQWV 569 >gi|78045011|ref|YP_359840.1| flagellar MS-ring protein [Carboxydothermus hydrogenoformans Z-2901] gi|77997126|gb|ABB16025.1| flagellar M-ring protein FliF [Carboxydothermus hydrogenoformans Z-2901] Length = 528 Score = 356 bits (914), Expect = 5e-96, Method: Composition-based stats. Identities = 121/559 (21%), Positives = 226/559 (40%), Gaps = 42/559 (7%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 ++L + + F++ +S + IL IL ++ + F+ P Y L L+ + Sbjct: 5 SLLASIKERFQNLSSFQKRAYGIL---ILTAVLSLLLGYIFLGRPSYTPLATGLDAKEAG 61 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I+ L E I++++ D G++I VP S V +ARI LA+ G+ ++S G+ELFD+ G Sbjct: 62 AIAEKLKEWKINYKLGDEGTTILVPKSQVYEARIKLASAGVLETNSGIGFELFDQT-KLG 120 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV--MIRA 179 + F ++ RAL+ E+ RTI + + ARVH+V+P+ F TAS+ ++ Sbjct: 121 ASDFENQVNYQRALQEELRRTIVQLDAVEDARVHLVLPEKSVFISEEKPATASILLKLKP 180 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQ 235 + + + I +LVA +V L +V V+D+ G +L+ + G+ + + Sbjct: 181 LKKLTPQEIKGIIYLVANSVEGLKPENVQVVDTYGNVLSDQVDLSSSLSAQSGRQQEMKK 240 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 + E+ IN L LG ++ A+L+ + ++ + P V S + SK+ Sbjct: 241 QFETELTNRINNLLTTILGPGKAVVSINADLDFNQEETTSQIALPGPLV--SEQGSKEVV 298 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 + T + + + E K++ NY++ ++ Sbjct: 299 YGSPGASGTVGTGPNTNQNY--PYINGSTNGEVQVKEDFTRNYQVGQTVYKLVKAPGTVK 356 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 RLS A+ ++ G + + +I IV+AA G + RGD I I ++ F + Sbjct: 357 RLSAAIAIDSGV-------------PAADVNKIRDIVAAAMGYDQNRGDQIIINTITF-D 402 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVT-FLGLHALRRLHNIDDAKKGEV 474 L Q + + + L G L+ + +RR A Sbjct: 403 KTLAKQMEEQQAQAQKEQQARQALYKWLAIGAGALVFLSIIVFFGIRRFRKKPAA----- 457 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 IS G+ + A I + I + ++ + Sbjct: 458 -------VADISPRAPVGVSELEAAAAAERGPGIIVREMTAE-PIVIQKVQSDIEKIKSL 509 Query: 535 IEINEERFAKILRKWARSE 553 ++ N + A +LR W E Sbjct: 510 VDKNPDEVAMVLRAWLTDE 528 >gi|28901391|ref|NP_801046.1| flagellar MS-ring protein [Vibrio parahaemolyticus RIMD 2210633] gi|28809938|dbj|BAC62879.1| putative flagellar M-ring protein [Vibrio parahaemolyticus RIMD 2210633] Length = 584 Score = 356 bits (914), Expect = 6e-96, Method: Composition-based stats. Identities = 123/563 (21%), Positives = 239/563 (42%), Gaps = 38/563 (6%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + ++L Q + S R L+L++V+ + + + +S + LY + E D+ Sbjct: 31 VTNKLKQLWSSS-----QRNLVLSAVLAAIVAAIIVVALWSSSQSFRPLYSQQERFDIGE 85 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L + +R+ + + VP V + R+ LA++G+ + +G + + +S G Sbjct: 86 IVSVLESEGVSYRMQEQNGQVLVPEGEVARIRMLLASKGV-KAKLPTGLDSLKEDSSLGT 144 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI-GARPTASVMIRAIN 181 + FM+ LEGE+ RTI S++ + ARVH+ +P F + G P+ASVM+ Sbjct: 145 SQFMETARYRHGLEGELVRTIMSLNSVANARVHLAIPRQTLFVRQNGENPSASVMLELKP 204 Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIVQA 236 K EAI +L+ +V + V+V+D G+LL+A+ K L + Sbjct: 205 GEDLKPEQVEAIINLIVGSVTAMKPEFVSVIDQYGRLLSADVASAEAGKVNAKYLEYQKN 264 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 ++ +I L +G NFR V A+++ + + D ++ V R+ ++ Sbjct: 265 VEKQIIQRAADMLTPIVGPSNFRVQVAADMDFSQVEETREILD-NAPVVRNEHTIQNNSI 323 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 + + N P V+ + S + E Y + + T + ++E+ Sbjct: 324 DQIAL--GVPGSLSNQPPVT-GEAATNDSQNTNARSEVNRQYAVGSSVRRTQYQQGQIEK 380 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 LS++V++N + + D+ A+I+ +++ A GI++ RGD++++ S +F Sbjct: 381 LSVSVLLNSKASPDGV------AWSDADKAQISTMITDAVGISAARGDSLSLMSFNFTPI 434 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476 + ++ T + D TV L +++G +L + LR L V Sbjct: 435 DI-DAPTALPWWQD------PTVQQPLRYVIGGMLGLAMIFFVLRPLIMHLTGADKPVPE 487 Query: 477 KSILSPPPISSA----VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL- 531 + PP T ++ + ++ S S L + S L + Sbjct: 488 LNFAEPPQEEPDYDNLQTREEREHEEVLNRRLSEKGISASTGLDVNSDMLPPAGSPLEIQ 547 Query: 532 ---LHMIE-INEERFAKILRKWA 550 L +I ER A+IL++W Sbjct: 548 LKHLQLIANEEPERVAEILKQWV 570 >gi|153831728|ref|ZP_01984395.1| flagellar M-ring protein FliF [Vibrio harveyi HY01] gi|148872238|gb|EDL71055.1| flagellar M-ring protein FliF [Vibrio harveyi HY01] Length = 556 Score = 356 bits (913), Expect = 7e-96, Method: Composition-based stats. Identities = 119/559 (21%), Positives = 234/559 (41%), Gaps = 31/559 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + +++ Q + S R L+L++V+ + + + +S + LY + E D+ Sbjct: 4 VTNKIKQLWSSS-----QRNLVLSAVLAAIVAAIIVVALWSSSQSFRPLYSQQERFDIGE 58 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L I +R+ + + VP V + R+ LA++G+ + +G + + +S G Sbjct: 59 IVSVLESEGISYRMQEQNGQVLVPEGEVARIRMLLASKGV-KAKLPTGLDSLKEDSSLGT 117 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAIN 181 + FM+ LEGE+ RTI S++ + ARVH+ +P F + P+ASVM+ Sbjct: 118 SQFMETARYRHGLEGELVRTIMSLNAVANARVHLAIPRQTLFVRQNTENPSASVMLELKP 177 Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIVQA 236 K EAI +LV +V + V+V+D G+LL+A+ K L ++ Sbjct: 178 GEDLKPEQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLSADVASAEAGKVNAKYLEYQKS 237 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 ++ +I L +G NFR V A++N + + + D ++ V R+ ++ Sbjct: 238 VEKQIIQRAADMLTPIVGPSNFRVQVAADMNFSQVEETQEILD-NAPVVRNEHTIQNNSV 296 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 + + N P V+ + P S + E Y + + T + ++E+ Sbjct: 297 DQIAL--GIPGSLSNQPPVT-GETPTNDSQNTNARSEVNRQYAVGSSVRRTQYQQGQVEK 353 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 LS++V++N + + ++ ++I+ ++ A GI++ RGD++++ S +F Sbjct: 354 LSVSVLLNSQAAPDGV------AWSEADKSQISTMIMDAVGISNARGDSLSLMSFNFTPI 407 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476 ++ + + + VI V L + F L L D E+ Sbjct: 408 EIDAPPALPWWQDPTVQQPLRYVIGG----VLGLAMIFFVLRPLIMHLTGADKPAQELEF 463 Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL----L 532 P + T + + ++ + S L + S L + L Sbjct: 464 AEPQEEPQYDNLQTREEREREELLNRKLSEKGIAVSSGLDVNSDMLPPAGSPLEIQLKHL 523 Query: 533 HMIE-INEERFAKILRKWA 550 +I ER A+IL++W Sbjct: 524 QLIANEEPERVAEILKQWV 542 >gi|99082787|ref|YP_614941.1| flagellar MS-ring protein [Ruegeria sp. TM1040] gi|99039067|gb|ABF65679.1| Flagellar M-ring protein [Ruegeria sp. TM1040] Length = 571 Score = 356 bits (913), Expect = 7e-96, Method: Composition-based stats. Identities = 155/576 (26%), Positives = 240/576 (41%), Gaps = 41/576 (7%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + Q+ + L + + ++ L I F N P LY LE S + Sbjct: 14 VQQIKNVWAG---LDKRKRMMAIGATLAVIFTFFLMSLVANKPSMQLLYAGLESSSAGDV 70 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 AL ++ +D+ + G SI VPSS + R+ LA+QGLP++ GYEL D ++ FG T Sbjct: 71 VSALEQSGVDYEVR--GGSIYVPSSKRDELRMTLASQGLPANGGK-GYELLDSLSGFGTT 127 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN-P 182 S M + RA EGE+ARTI + + ARVHI F++ PTASV + + P Sbjct: 128 SQMFDAAYWRAKEGELARTIVANPHVSQARVHIANTGSNPFQRTIE-PTASVSVTPMGSP 186 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242 A AIR LVA+AV L + +V V+D+ G L+ + E + Q + Sbjct: 187 ITPSQANAIRFLVASAVAGLAVDNVAVIDANGALIGSPEAAAAAGAGTDDRSQT----LR 242 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 + + + A +G N + E DT+ IRE DP S+V S + + S+ Sbjct: 243 ERVLRLVEARVGQGNAVVEISVETITDTESIREKRVDPQSRVAISTDVEERIDSSQN--Q 300 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 VTV N+P S +T+ E+ NYEI+ ++RL++AV+ Sbjct: 301 AGEVTVASNIPDGDAGN--GEGSKASTNATRERVNYEISETEKEIVRGPGAIKRLTVAVL 358 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 +N G +A + + + L + +++SAA G ++ RGD IT+ SMD L N Sbjct: 359 INGVTTETAEGEAAFEPRPEEELEALRELISAAVGFDAERGDVITLKSMD-LPNVEPLGT 417 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA-----KKGEVGGK 477 V S D L ++I + L LGL +R + + A + Sbjct: 418 EVTSSVFDNLYFDVMSIIQMAALAIVAL---ILGLFVVRPILAGNGASVQALPSPDGVAA 474 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY--------------- 522 L P S G M N ++ + + + Sbjct: 475 GGLPELPDMSGGDAGFMTNPDLGANIALDGEIDGGDGGFQPLGDLPGMGDGLAGFGGGGG 534 Query: 523 -VSKQSDLRLLHMIEINEERFAKILRKWARSEIEDR 557 +S RL MI +E +ILR W E+R Sbjct: 535 GMSDDPVDRLRSMIGERQEETVQILRGWLEENNEER 570 >gi|156976202|ref|YP_001447108.1| flagellar MS-ring protein [Vibrio harveyi ATCC BAA-1116] gi|156527796|gb|ABU72881.1| hypothetical protein VIBHAR_04973 [Vibrio harveyi ATCC BAA-1116] Length = 583 Score = 355 bits (912), Expect = 8e-96, Method: Composition-based stats. Identities = 119/559 (21%), Positives = 234/559 (41%), Gaps = 31/559 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + +++ Q + S R L+L++V+ + + + +S + LY + E D+ Sbjct: 31 VTNKIKQLWSSS-----QRNLVLSAVLAAIVAAIIVVALWSSSQSFRPLYSQQERFDIGE 85 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L I +R+ + + VP V + R+ LA++G+ + +G + + +S G Sbjct: 86 IVSVLESEGISYRMQEQNGQVLVPEGEVARIRMLLASKGV-KAKLPTGLDSLKEDSSLGT 144 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAIN 181 + FM+ LEGE+ RTI S++ + ARVH+ +P F + P+ASVM+ Sbjct: 145 SQFMETARYRHGLEGELVRTIMSLNAVANARVHLAIPRQTLFVRQNTENPSASVMLELKP 204 Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIVQA 236 K EAI +LV +V + V+V+D G+LL+A+ K L ++ Sbjct: 205 GEDLKPEQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLSADVASAEAGKVNAKYLEYQKS 264 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 ++ +I L +G NFR V A++N + + + D ++ V R+ ++ Sbjct: 265 VEKQIIQRAADMLTPIVGPSNFRVQVAADMNFSQVEETQEILD-NAPVVRNEHTIQNNSV 323 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 + + N P V+ + P S + E Y + + T + ++E+ Sbjct: 324 DQIAL--GIPGSLSNQPPVT-GETPTNDSQNTNARSEVNRQYAVGSSVRRTQYQQGQVEK 380 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 LS++V++N + + ++ ++I+ ++ A GI++ RGD++++ S +F Sbjct: 381 LSVSVLLNSQAAPDGV------AWSEADKSQISTMIMDAVGISNARGDSLSLMSFNFTPI 434 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476 ++ + + + VI V L + F L L D E+ Sbjct: 435 EIDAPPALPWWQDPTVQQPLRYVIGG----VLGLAMIFFVLRPLIMHLTGADKPAQELEF 490 Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL----L 532 P + T + + ++ + S L + S L + L Sbjct: 491 AEPQEEPQYDNLQTREEREREEVLNRKLSEKGIAVSSGLDVNSDMLPPAGSPLEIQLKHL 550 Query: 533 HMIE-INEERFAKILRKWA 550 +I ER A+IL++W Sbjct: 551 QLIANEEPERVAEILKQWV 569 >gi|146278778|ref|YP_001168937.1| flagellar MS-ring protein [Rhodobacter sphaeroides ATCC 17025] gi|145557019|gb|ABP71632.1| flagellar M-ring protein FliF [Rhodobacter sphaeroides ATCC 17025] Length = 543 Score = 355 bits (912), Expect = 8e-96, Method: Composition-based stats. Identities = 136/553 (24%), Positives = 243/553 (43%), Gaps = 26/553 (4%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + L+ + GR R +++ + + + +F ++F N P LY L+ + + Sbjct: 14 VQNLISIWNDLD--GRRRAIVVGATAAMFLAIFGLSQF-ANKPRMALLYAGLQGAVAGEV 70 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 AL + + + G SI V +S + R+ LA +GLP++ + +GYEL D ++ FG T Sbjct: 71 VAALEAQGVAYEVQ--GDSIHVDASRRDELRMKLAGEGLPATGT-AGYELLDGLSGFGTT 127 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP- 182 S M + +RA EGE+ARTI + + AARVHI F++ RPTASV + Sbjct: 128 SQMFDAAYLRAKEGELARTILASPQVKAARVHIAPAAAQLFQRER-RPTASVTVTTSGGN 186 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242 + A A +HL+A+AV + DV+V+D+ G L+ A + I G + + E+ Sbjct: 187 LTMEQARAFKHLIASAVAGMQPEDVSVIDTVGGLIRAGDTGDGIAGTAGTRA----AELR 242 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 N+ + L A +G V ++ ++ I E +DP +V S L + S ++QP Sbjct: 243 RNVERLLEARVGPGRAVVEVSLDVETASETIVEKTFDPKGRVPISSELQEKT--SSSTQP 300 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 VTV N+P N+ + E +N+E++ + RL++AV+ Sbjct: 301 APDVTVASNLPE--GDAAGGSAGKSNSSETRETTNFEVSQTQRELVRQPGTVRRLTVAVL 358 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 V+ R+ G+ Q + + LA + ++V AA G++ RGD +T+ S+ F + Sbjct: 359 VDGVRMAGEDGQLTWQPRPEEELAVLRELVGAAVGLDESRGDRLTLRSLIFETPPDLGTL 418 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482 + S ++I V + L++ + + L D L Sbjct: 419 AEAGMLGRLGSFDLMSLIQIAVLALVALVLGLFVVRPV--LTARRDPALSSATPPLALPG 476 Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542 ++ TG + + + D+ + ++ RL +IE + Sbjct: 477 YGGTNEALTGEIDD--------STDLPDFPMVASAPLDFDDEPDPVARLRRLIEERQAES 528 Query: 543 AKILRKWARSEIE 555 +ILR W + E Sbjct: 529 VEILRGWMEPQRE 541 >gi|46204512|ref|ZP_00209445.1| COG1766: Flagellar biosynthesis/type III secretory pathway lipoprotein [Magnetospirillum magnetotacticum MS-1] Length = 435 Score = 355 bits (912), Expect = 9e-96, Method: Composition-based stats. Identities = 159/435 (36%), Positives = 245/435 (56%), Gaps = 9/435 (2%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M +Q + + + LG R++ L V L+ + ++++ P + LY L DV Sbjct: 1 MFGREQAERLWSNIVDLGARRLIALGLVGLLVFLGVGVGAYYLSRPAQETLYTGLSREDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +RI L + I F +S +G+++ V +AR+ LA +GLP SS SGYELF+ + S Sbjct: 61 SRIGGVLKDNGIPFDVSSDGTAVLVSFGHTAQARMLLAEKGLPQSSK-SGYELFNDLGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 G+TSFMQE+TRVRALEGEIARTIQ + G+ AARVH+V+PD GSFR+ +ASV++R Sbjct: 120 GMTSFMQEVTRVRALEGEIARTIQGMKGVRAARVHLVLPDRGSFRREQQPASASVVVRTE 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK-LLTANEMERNILGKSLSIVQAIQH 239 A+AIR LVA+A+P + VTV+ S G LL ++ GK ++ +++ Sbjct: 180 PADDVSGAQAIRQLVASAIPGMKPDRVTVIGSEGTVLLAGDDAGTAPTGKMATLEKSVSR 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 E++ NI + LA +LGV NF +V +LN D E +Y+PD +VERS+R ++ + ++ Sbjct: 240 EMQDNIRRTLAPYLGVGNFEVSVATQLNTDKTSTNETIYNPDQRVERSVRSVRENENAQN 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + + ++N+P R +S + KKE+ +NYEI+ K+I T D Y + RLS+ Sbjct: 300 RNSQRPTSAQENLPDQRTRSDGNDQSSNESSKKEDLTNYEISQKTIQTVSDGYAIRRLSV 359 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN------SRRGDTITITSMDF 413 AV+VN+ RLT + G D+ ID +AEI I S RGD I + ++ F Sbjct: 360 AVLVNRSRLTAMAGPD-DKAGIDKQIAEIEXIGSGLPXPRPRXLPARERGDIIKVAAVGF 418 Query: 414 LENQLFNSGTVQVSF 428 + + +S Sbjct: 419 INDGQPLEPVPPLSL 433 >gi|315452715|ref|YP_004072985.1| Flagellar basal-body M-ring protein FliF [Helicobacter felis ATCC 49179] gi|315131767|emb|CBY82395.1| Flagellar basal-body M-ring protein (FliF) [Helicobacter felis ATCC 49179] Length = 567 Score = 355 bits (911), Expect = 1e-95, Method: Composition-based stats. Identities = 122/563 (21%), Positives = 241/563 (42%), Gaps = 34/563 (6%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNS-----PHYDNLYVKLE 56 + Q++ F L + + + + S ++ + + + +Y L+ ++ Sbjct: 5 GLFQQIIDLFAR---LNKAQKITIVSAFVLVVAFLIFLLVYPTKGNNDLSNYGVLFEGMD 61 Query: 57 VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 SD + L + I ++I + +I +P + + RI LA+QG+P +S GYE+FD Sbjct: 62 NSDNALVLQYLQQKQIPYKIPKD-DTILIPKDKIYEERIALASQGIPKTSK-VGYEIFDT 119 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 + FG T F Q I +RA+EGE++RTI+S++ I A VHI +P F PTASVM Sbjct: 120 KD-FGATDFDQNIKYIRAIEGELSRTIESLTPIDKASVHIAIPKDSVFVSREIPPTASVM 178 Query: 177 IRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSL 231 ++ K I++L+AA+VP L + +V +++ G+ L + + + + L Sbjct: 179 LKIKPNMRLLPKQILGIKNLIAASVPKLTVENVKLVNENGEPLGEDDELDTTKELAQAQL 238 Query: 232 SIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290 Q ++ +E I+ LA + G D + V AE + ++ + +DP++ V RS + Sbjct: 239 HYKQNFENLLESKISNILAPIVGGRDKVVAKVSAEFDFSQKKSTKETFDPNN-VVRSEQS 297 Query: 291 SKDAQRSET-SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 ++ + Q V N+ V + V + E +K +NYE+ Sbjct: 298 MEEKREGYPKKQVGGVPGVVSNIGPV--QGVANDQLKEKYEKSTNTTNYEVGKTVSEIKG 355 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRS---ADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 + L RL+ AVVV+ + + +IN +V A G + RGD + Sbjct: 356 EFGVLTRLNAAVVVDGRYKKVDKNGTETIEYVPLSAEEMDKINALVKQAIGYSQSRGDAV 415 Query: 407 TITSMDF-LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL----R 461 +++ +F + + + F++ R+ + +L+ L++ + + Sbjct: 416 AVSNFEFNAKTAKYVPISAYEKFVNTTERYLGPFSSLFKYLIIGLILYVFYKKVITPFSQ 475 Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSR 518 R+ I ++ +V + G M D + L +S + + R Sbjct: 476 RMLEIQPDEEEKVQSLFAMDEDDEEEIDRFGEMRKKVEDQLGLSASFNEEDVKYDIMLER 535 Query: 519 INSYVSKQS--DLRLLHMIEINE 539 + + ++ L ++ +E Sbjct: 536 VKGALKEKPAEVASLFQLLIKDE 558 >gi|309388817|gb|ADO76697.1| flagellar M-ring protein FliF [Halanaerobium praevalens DSM 2228] Length = 512 Score = 355 bits (911), Expect = 1e-95, Method: Composition-based stats. Identities = 139/553 (25%), Positives = 249/553 (45%), Gaps = 59/553 (10%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 + ++ T L ++ +++ + ++ F F S +Y L+ L SD I L Sbjct: 11 EVKETWTKLNKSVQILIIILTILMAGAFGYLIFRGASSNYQPLFTNLSTSDTAAIVERLD 70 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 E +D+++ NG++I VP S + + R+ +A+ GLP G+E+FD + FG T F + Sbjct: 71 ENQVDYKLGGNGNTILVPESEIHRLRLDMASAGLPDQGV-VGFEIFDS-SDFGTTEFERR 128 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYK 186 + RAL GE++R+IQSISGI ARV I P+ F TASV+++ + Sbjct: 129 VNYYRALGGELSRSIQSISGIEFARVQITPPEESLFLDEEKSATASVVVKLSAGYKMSSE 188 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAIQHEIEM 243 A+++LVA+ V +L + +VT++D+ G LL+ E R ++ +I + + ++ Sbjct: 189 RVRAVQNLVASGVQDLPLEEVTLVDTNGNLLSKPVNSEDGRWSDPQNFAIQKEFESALKN 248 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQRSETS 300 ++ L LG +NF V A+LN D + Y P DS + RS ++ ++Q E Sbjct: 249 DLRVLLTKVLGPNNFAVQVNAKLNFDQRHSESKTYAPVIDDSGIIRSQEVNTESQ--ENG 306 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 A + N+P S D++ +NYEIN + + ++ERLS++ Sbjct: 307 INGGAPGTDANIPQYQAEGTGEASS---YDRENTITNYEINERIEEHIYAPGEVERLSVS 363 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 V+++ Q + +A+I V AA G N RGD + I+S+ F ++ Sbjct: 364 VMLD-------------QDTDEEKIAQIRNAVGAAIGYNEDRGDVLNISSIAFDDSMEVA 410 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 + + R I A + L+ +L + L ++ R+ + D +++ E+ + Sbjct: 411 AQEAMEAQQAAERRQM--YIYAGLILLVLILTSALIIYLYRKKPSSDQSEQLELAAE--- 465 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 +I N + + V + L +MI + E Sbjct: 466 ----------------------GDEDEIDLFEPNADQKKRAKVKNE----LENMIHSDPE 499 Query: 541 RFAKILRKWARSE 553 AK++R W E Sbjct: 500 NAAKLIRSWIVDE 512 >gi|149203111|ref|ZP_01880082.1| flagellar M-ring protein FliF [Roseovarius sp. TM1035] gi|149143657|gb|EDM31693.1| flagellar M-ring protein FliF [Roseovarius sp. TM1035] Length = 535 Score = 355 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 144/555 (25%), Positives = 259/555 (46%), Gaps = 25/555 (4%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + Q+ + +++ T R RI+++ + ++ + AR ++P LY LE S + Sbjct: 1 MQQITRLWQALT--LRNRIIVIGAAFVMFWAVLALARM-ASTPSMTLLYAGLESSAAGEV 57 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 AL + + + + ++ +I V S+ + R+ LA +GLP S + SGYEL D ++ FG T Sbjct: 58 VAALEQQGVTYEVRND--AILVDSTRRDELRMILAGEGLPRSGT-SGYELLDGLSGFGTT 114 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 S M + RA EGE+ARTI S IVAARVHI F++ R +ASV + + Sbjct: 115 SQMFDAAYWRAKEGELARTIVSHPAIVAARVHIASTGANPFQRNVHR-SASVSVSTNGAA 173 Query: 184 VY-KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242 V K A A++ LVA+AV +L DV+++D+ G LL+ E + + + Sbjct: 174 VSAKHARALQFLVASAVADLTPDDVSIIDAEGTLLSGAEEAKTNTADERA------EGLR 227 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 + + L A +G N + E T+ RE +DP+ +V S + A S + Sbjct: 228 LRAQRLLEARVGHGNAVVEIALETVTQTESTRERRFDPEGRVAISTDTEERANTS--NGT 285 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 ++ VTV N+P S + E+ NYE+++ ++R+++A++ Sbjct: 286 DNGVTVASNLPD--GDAAAAATSASENTETRERVNYEVSSTEREVIQQPGAIKRMTVAIL 343 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 +N + G + + L + +V +A G++ RGD +TI ++ F E Sbjct: 344 INGITTPDASGTPIFAPRPEEELTALGDLVGSAVGLDETRGDALTIRTLQF-EPSAPTGT 402 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482 V+ ++ L+ T++ +LV + L+ LGL LR + + I Sbjct: 403 LVEAGLLERLAIDTMTLVQSLVLAIVALV---LGLFVLRPILSRPVPLATPQLSAPIRRA 459 Query: 483 PPISSAVT--TGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 P A+T +G++ + +I + + + +L+ R++ + RL +I +E Sbjct: 460 PVQDPALTPLSGVIEDGDIDVAGLSDVSEAPQISLRPRLDGG-TDDPVSRLRALIGQRQE 518 Query: 541 RFAKILRKWARSEIE 555 +ILR W +E E Sbjct: 519 ETVEILRNWLEAEEE 533 >gi|15606425|ref|NP_213805.1| flagellar M-ring protein [Aquifex aeolicus VF5] gi|6225356|sp|O67241|FLIF_AQUAE RecName: Full=Flagellar M-ring protein gi|2983628|gb|AAC07196.1| Flagellar M-ring protein [Aquifex aeolicus VF5] Length = 489 Score = 355 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 126/556 (22%), Positives = 240/556 (43%), Gaps = 75/556 (13%) Query: 4 LDQLLQFF----KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 +D+L ++ + +L + + + L+ + L A +++ +Y LY L D Sbjct: 1 MDKLREYLNLLKERFNALTPVQKALAVGIPLLLLSLGAVALIYLSQENYTVLYTGLSPDD 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 +N + L + + ++IS +G +I VP ++ + R+ LAA+G+P GYELFDK + Sbjct: 61 LNAVVTELDKEGVKYKISPDGRTIYVPENVARELRLKLAAKGVPRKG-IVGYELFDK-SG 118 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 L+ F Q + RA+EGE+A+TI S+ + ARVHIV+P+ F + ASV ++ Sbjct: 119 IVLSRFQQLVNFKRAIEGELAKTIMSLDCVEFARVHIVLPEKSLFIREEEEAKASVFLKL 178 Query: 180 INP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQA 236 + +AIR+LV+ +V NL V V+D G+ LTA + E L + + Sbjct: 179 KPGCELTPEQVKAIRNLVSGSVENLKPSQVVVVDDKGRDLTAYLDEEFKTNASQLKVKRE 238 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 + +E + K L G + V AEL+ + + RE +YDPD S + K+ R Sbjct: 239 FEKSLERKLQKTLEEVFGYGKVKVNVSAELDFSSMKKREELYDPDLTAVVSEQKKKE--R 296 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 + +++ + + N+P + R+ T++KE +NYE++ + I K++R Sbjct: 297 TTSTRAQGIPGTQANIPPATGRQGGGELI---TERKESITNYEVSKREIYFEDKTIKVKR 353 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 +S+ +V++K E+ ++ A+ G++ +RGD ++I S+ F++ Sbjct: 354 ISVGLVIDKDVKVNT--------------EELKNLIIASAGLDPKRGDQVSIVSVPFVKP 399 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476 + +++ + + +L++ L L +L Sbjct: 400 TVVAEKPKVPTYV------------YVAVALVSLVILGLVAFGLVKLLRRRPPAPTPAPA 447 Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536 + P + K LL + + Sbjct: 448 VPGVPPT-----------------------------------VEEVRKKTPYEELLEIAK 472 Query: 537 INEERFAKILRKWARS 552 E+ A +L+KW + Sbjct: 473 QEPEKVAMVLKKWLKE 488 >gi|188997543|ref|YP_001931794.1| flagellar M-ring protein FliF [Sulfurihydrogenibium sp. YO3AOP1] gi|188932610|gb|ACD67240.1| flagellar M-ring protein FliF [Sulfurihydrogenibium sp. YO3AOP1] Length = 536 Score = 355 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 125/561 (22%), Positives = 238/561 (42%), Gaps = 45/561 (8%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF-VNSPHYDNLYVKLEVSDVN 61 I++++ + F+ + + +I V L I+L ++ Y LY L D Sbjct: 8 IINKIKEIFQ---DKAKQKYIIGGLVGLFLIILIAILITKNLHKEDYAVLYSGLAPDDAG 64 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I ALS+ NI +++ NG+ I VP V AR+ LAA+GLP S G+E+F++ G Sbjct: 65 NILTALSQENIPYKLEGNGTIIMVPKDKVYDARLKLAAKGLP-SGKVVGFEIFEE-PKLG 122 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--A 179 T F + + +RA+EGE+ RTI+ + ++ A+V+I +P F + ASV+I+ Sbjct: 123 TTQFQENVNYIRAVEGELTRTIKQLDAVMDAKVNIALPKDSIFVRQEDEAKASVIIKLWP 182 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQA 236 + +AI LV+ AVPNL +VTV+D+ G++L+ E K++ + + Sbjct: 183 DKDLTKEQIKAIVFLVSRAVPNLKPENVTVVDNRGRVLSDLIDEESANESGDKTVDLKRK 242 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 ++ ++E +I LA +G + EL ++ +YDPD S R K+++ Sbjct: 243 LERQLEKDIQSMLAKVVGPERVVVKASVELETGKVHQKDEIYDPDKVAVVSERKIKESET 302 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 E+ + N+P V + V + + +K + +NY+++ I T + +++ Sbjct: 303 EESQTINAPPGTPTNVPPVMNTPV-MGGGGKKKEKSDITTNYDVSKSMIETQKPLFTIKK 361 Query: 357 LSIAVVVN--KGRLTEVLGRSADQ--GKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 +S+ V+++ + + G Q + L ++ +A G + RGD +T+ S+ Sbjct: 362 VSVGVMIDGKYKEIKDKDGNIIKQFEPRSQQELQSYENLIKSAIGFDPNRGDQVTVISVP 421 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F + + + L + Sbjct: 422 FEATSTQEEVSTKQQ-------------------------NLIMYVIAGILLLLILGLLA 456 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 + K TT P +A + + +S ++ L++L Sbjct: 457 FIFIKKKKQKKEEIITATTLSAPLAGVAA----EALAKKYEEEKSLVSEIEKLPEYLKIL 512 Query: 533 HMIEINEERFAKILRKWARSE 553 + E N + A I+ KW + + Sbjct: 513 EIAEENPQMIANIITKWIKED 533 >gi|83944186|ref|ZP_00956642.1| flagellar M-ring protein [Sulfitobacter sp. EE-36] gi|83845053|gb|EAP82934.1| flagellar M-ring protein [Sulfitobacter sp. EE-36] Length = 548 Score = 355 bits (910), Expect = 2e-95, Method: Composition-based stats. Identities = 141/550 (25%), Positives = 252/550 (45%), Gaps = 24/550 (4%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 ++L + ++L + V P Y LY L ++ N I L+ A + +S++G+S Sbjct: 1 MMLGGAGIGVVLLMILGIGAVTRPDYAPLYSNLSITSANSIEATLANAGFNAMVSEDGTS 60 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 ISVP +AR+ LA G+P + G+ELFD+ + + SF+Q+I ++RA+EGE+AR+ Sbjct: 61 ISVPRGDAVRARMVLAETGMPIDG-DPGWELFDESSGLAMNSFLQKINKMRAMEGELARS 119 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS--VYKSAEAIRHLVAAAVP 200 IQ++ GI +ARVH+V+PD F + P AS+++R + K A A+ +LVA+AV Sbjct: 120 IQTLDGISSARVHLVLPDREPFSRDAPAPRASIILRPESGRAVTRKQAVAVSNLVASAVA 179 Query: 201 NLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRS 260 +LD+ VTVL ++G+ + A + + G S I+ + I L A +G N R Sbjct: 180 DLDISRVTVLSASGETILAEGPDGSSQGGVQSAKAGIEDRLSQEIQNILTARVGAGNARV 239 Query: 261 AVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV 320 V EL + I E YDPD +V RS + Q ++ V VE N+P Sbjct: 240 HVNVELTTQREVIVEQTYDPDQQVVRSTETKSEDQTG--TKEAGNVGVENNIPAALADGN 297 Query: 321 PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380 S ++ +E YEI + + R+S+AV+VN + + Sbjct: 298 GAGTSTRRSEA-DEIVQYEIGNTRREIVREAGDVRRMSVAVLVNGIYNVDGSD-VIYAER 355 Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440 LA + ++V A G ++ RGD++++ SM F++ + + S D LS + +++ Sbjct: 356 TPEELARLGELVKTAVGFDTTRGDSVSVDSMRFMDYSMDLGDPIDKSIGDELSENVVSIV 415 Query: 441 NALVFLVGTLLVTFLGLHALRR--------------LHNIDDAKKGEVGGKSILSPPPIS 486 ++ L+ L+ G+ + R + A + P Sbjct: 416 RGVLALLVVGLILVFGVRPMLRKFSEGDQLNSYEDPALTAEKAAEPAALTAEGQRPKLPG 475 Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNL---QSRINSYVSKQSDLRLLHMIEINEERFA 543 + + D+ L ++ DI + + I + K+ + + + + Sbjct: 476 TTPAVADIAEDDDPLTITDDDIEAAEVAEYVRKEGIRGNLHKKKIETIQQLADEKPQEVL 535 Query: 544 KILRKWARSE 553 +++R W +E Sbjct: 536 RVIRSWLPAE 545 >gi|56460308|ref|YP_155589.1| flagellar MS-ring protein [Idiomarina loihiensis L2TR] gi|56179318|gb|AAV82040.1| Flagellar basal body M-ring protein [Idiomarina loihiensis L2TR] Length = 570 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 114/552 (20%), Positives = 215/552 (38%), Gaps = 29/552 (5%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 + R I++LA I V I +F+ + Y L +LE ++ + I Sbjct: 36 GNFDMLRQVIVVLALAICVAIAVFI--MLWAQESTYRPL-GQLETEELISTLDYMDANGI 92 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSS-SSNSGYELFDKVNSFGLTSFMQEITR 131 ++++ G+++SVP ++ L G+ S+N+G E+ FG++ ++ Sbjct: 93 EYQVE--GNTVSVPEENYDAIKLQLTRAGVDYGNSTNNGSEILMSEPGFGVSQRLERERL 150 Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYKSAE 189 + + E ++AR I+ I + AARV + +P F + P ASVM+ + Sbjct: 151 IHSREVQLARAIEEIKKVSAARVLLAVPKENVFARREKEPKASVMLNVRGGTSLSEEEVA 210 Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIV--QAIQHEIEMNINK 247 +I +VA++V L+ VTV D G+LL + S Q + I+ Sbjct: 211 SIVDMVASSVTGLNTESVTVTDQAGRLLNSGSQSALAAKSSREYQIEQKREEAYLEKIDS 270 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVT 307 L LG DN+ + V ++ ++ + ++PD RS ++ RS S Sbjct: 271 ILIPVLGYDNYTAQVDVTMDFTQREETQRQFNPDMPAIRSEMTVEN--RSMGSAIGGIPG 328 Query: 308 VEQNMPHVSDRKVP------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 N P + + +E NYE++ T + ++RLS++V Sbjct: 329 ALTNQPPLDSDIPEEAGDGTAGGGATGSTHREATRNYELDNSVTYTRNQTGTIKRLSVSV 388 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 VN +T G Q + +A I +++ G + RGD+I + S+ F + + Sbjct: 389 AVNHEAITNEAGEGETQARSAEEIANIRRLLQGGLGFDINRGDSIEVVSVPFAQLPDLGA 448 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 G V R F V+ ALV +V L V L++L N + E + Sbjct: 449 GETPVWEEPWFWRAFRLVMGALVIMVLILAV---VRPMLKKLMNPESG--VEDDADAFSD 503 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 + L + + D +L + + + ++ E Sbjct: 504 EESMGDETIDLLSSQFDESAVGFGADGSLQLPDLHKDEDLLKA------VRALVANEPEL 557 Query: 542 FAKILRKWARSE 553 +++++ W + Sbjct: 558 SSQVVKAWLNED 569 >gi|294678998|ref|YP_003579613.1| flagellar M-ring protein FliF [Rhodobacter capsulatus SB 1003] gi|294477818|gb|ADE87206.1| flagellar M-ring protein FliF [Rhodobacter capsulatus SB 1003] Length = 551 Score = 354 bits (908), Expect = 3e-95, Method: Composition-based stats. Identities = 144/567 (25%), Positives = 257/567 (45%), Gaps = 30/567 (5%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + QL+ ++ L TR +++A ++ +A F + LY LE + + Sbjct: 1 MQQLMAVWQG---LDTTRRVLVAGATILMFAAILALSSFASRSDMALLYAGLEGARAGEV 57 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 AL + + + G SI V ++ + R+ LA +GLP++ +GYEL D ++ FG T Sbjct: 58 VAALDARAVPYEVR--GDSIYVDAARRDELRMALAGEGLPATGG-AGYELLDGLSGFGTT 114 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 S M + RA EGE+ARTI + I AARVHI P SFRK PTASV + + Sbjct: 115 SQMFDAAYWRAKEGELARTIVANPMIRAARVHIAAPSGQSFRKEN-HPTASVTVTTASGG 173 Query: 184 VYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242 + + A+A++ LV++AV + DV+++DS L++ + N + E+ Sbjct: 174 LSPTHAKALKFLVSSAVQGMSPDDVSIIDSVAGLISTGDDVFNPAANDRA------EELR 227 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 N+ + L A +G N V + + + I E +PDS+V S + +++S+ ++P Sbjct: 228 SNVERLLEARVGYGNAVVEVSVQTVTEREAITEKRIEPDSRVAISTETQERSEKSDDTKP 287 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 AVTV N+P +S + EQ N+E++ + + ++RL++AV+ Sbjct: 288 -GAVTVASNLPQ--GDAANGGKSQSQASETREQVNFEVSETTREVLRNPGDIKRLTVAVL 344 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 V+ + G +A + D LA + ++V++A G + +RGD ITI SM F + Sbjct: 345 VDGVEGKDANGVTAITPRTDEELAALKELVASAVGFDEKRGDVITIRSMAFEPLAETGTE 404 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482 F + A++ +V +L F+ L + +A++ ++ Sbjct: 405 ATSSLFASAPLDTMQLIKIAVLAIVALILGLFVMRPILAQRAAAAEAERAMNLPGGMIGS 464 Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI------------NSYVSKQSDLR 530 + TG + + ++ + S N ++ + S + R Sbjct: 465 DEGTGRALTGEIADGDMPIGSMNVVSDFDIGDMPMTMGTGNFGDMGMGGESGQASDPVAR 524 Query: 531 LLHMIEINEERFAKILRKWARSEIEDR 557 L +IE + +ILR W E E+R Sbjct: 525 LKKLIEERQAESVEILRSWM-DEAEER 550 >gi|157961189|ref|YP_001501223.1| flagellar MS-ring protein [Shewanella pealeana ATCC 700345] gi|157846189|gb|ABV86688.1| flagellar M-ring protein FliF [Shewanella pealeana ATCC 700345] Length = 566 Score = 354 bits (908), Expect = 3e-95, Method: Composition-based stats. Identities = 117/553 (21%), Positives = 233/553 (42%), Gaps = 31/553 (5%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 G + R +ILA I + + +F+ + P Y L ++ +++ ++ AL + + Sbjct: 31 GGVDMLRQLTMILALAICLAVAVFV--MIWAQEPEYRPL-GQMSTAEMVQVLDALDKNQV 87 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 + I G + VP ++ L+ +GL + +N+ + +K + FG++ M++ Sbjct: 88 KYEIQ--GDVVKVPEDKYQDVKMLLSREGLDNQEANN--DFLNKDSGFGVSQRMEQARLK 143 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN-PSVYKSAEAI 191 + E +AR I+ + + A+V + +P F + ++P+A+V++ + ++I Sbjct: 144 HSQEQNLARVIEELKSVTRAKVILALPRENVFARNRSKPSATVVVSTRRSGLSQEEVDSI 203 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEMNINKAL 249 +VA+AV NL+ VTV D+ G+LL + + I + L IVQ + E + L Sbjct: 204 VDIVASAVHNLEPNKVTVTDANGRLLNSGTQDGASAIARRELEIVQQKESEYRTKVESIL 263 Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309 LG +NF S V ++ + Y+PD RS + ++ S Sbjct: 264 MPILGPENFTSQVDVSMDFTAVEQTAKRYNPDLPALRSEMVVENN--SAGGTSGGIPGAL 321 Query: 310 QNMPHVSDRKVPLPRSLEN------TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 N P ++ + E+ T KE N+E+NT T L R+S++V V Sbjct: 322 SNQPPMAADIPQEVNAEESLAVSSGTSHKEATRNFELNTTISHTRQQVGTLRRVSVSVAV 381 Query: 364 NKGRLT-EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 + G + + LA I +++ A G N++RGD I + S+ F++ + ++ Sbjct: 382 DFKNGPVSEDGSVNRVPRTEQELANIRRLLEGAVGFNTQRGDIIEVVSVPFMDQLIEDAP 441 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482 ++ R V+ ALV LV L V L L ++ + + GG+ + Sbjct: 442 PQEMWEQPWFWRAVKLVLGALVVLVLILAVVRPMLKRLVYPDSVKMPDEPQTGGE-LAEI 500 Query: 483 PPISSAVTTGLM--PNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 +A T G++ P + + + I + + ++ E Sbjct: 501 EDQYAADTLGMLQRPEAEYSYADDGSILIPNLHKDDDMIKA---------IRALVANEPE 551 Query: 541 RFAKILRKWARSE 553 ++++ W + Sbjct: 552 LSTQVVKNWLLED 564 >gi|148260475|ref|YP_001234602.1| flagellar M-ring protein FliF [Acidiphilium cryptum JF-5] gi|146402156|gb|ABQ30683.1| flagellar M-ring protein FliF [Acidiphilium cryptum JF-5] Length = 520 Score = 354 bits (908), Expect = 3e-95, Method: Composition-based stats. Identities = 137/556 (24%), Positives = 246/556 (44%), Gaps = 44/556 (7%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + Q + +LG ++ + +V + + L A LY L + D + I+ Sbjct: 1 MKQLIANLRALGPVKLGAMGAVAVAVLGLMAALVLTGGPSPSATLYSGLGLKDASHITET 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L A+I + I + G S+ V + + +AR+ LA LP+ SSN G+ +FD N +SF+ Sbjct: 61 LKAAHIRYAIGNGGHSVLVTPAQLDEARLLLAQHNLPAGSSN-GFAIFDHKNPLLGSSFL 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSV 184 I RAL+ E+ RTI I G+ A+RV +V+P F A ASVM+ + P Sbjct: 120 NRIDETRALDSELERTINLIHGVEASRVQVVLPRRDEFSLNTAPAQASVMLSLAGVGPLD 179 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIE 242 ++S EAI +LVA+AVP L +++++D+ G LL N + + ++ Q+ + ++ Sbjct: 180 HESVEAILNLVASAVPGLKPNNISIVDNRGDLLAQAGRTDNSLLSSRDAALKQSTERQLS 239 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 + LAA +G + R ++ D + Y+P+ +V RS + ++ ++ S +S Sbjct: 240 EAVRSMLAAVVGPNQVRVVTAVSMDFDRSEQTSTTYNPNGQVVRSQQQTR-SKSSRSSGT 298 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 V+V N+P + K P+ L+ K + +NYEI+ H ++ R+S+AV+ Sbjct: 299 NKTVSVSNNLPGATSSKA-GPKRLDTQSKSTQTTNYEISQDVKHIVHATPQITRISVAVM 357 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 ++ + T G+ + + +A+I K+V A G + RGD + + S+ F N+L S Sbjct: 358 LDDVKTTNPKGKVIWTPRSPAQVAQIRKLVETAIGYDKSRGDVVDVQSLQFAPNELPVSA 417 Query: 423 T---VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + L ++ + LLV F +RR+ Sbjct: 418 KRSLIGRFLSSGLLMPLLRLLVTAAIGIAALLVVF--RPMVRRIIT-------------- 461 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 PP ++ L+ N A+ ++ + +I+ + Sbjct: 462 ---PPENTTAEPALLAEQNGAIAGPATTEETN---------------PVKVIADLIDRHP 503 Query: 540 ERFAKILRKWARSEIE 555 E ILR W E Sbjct: 504 EASVAILRDWLGQEGA 519 >gi|326403668|ref|YP_004283750.1| flagellar M-ring protein FliF [Acidiphilium multivorum AIU301] gi|325050530|dbj|BAJ80868.1| flagellar M-ring protein FliF [Acidiphilium multivorum AIU301] Length = 520 Score = 354 bits (908), Expect = 3e-95, Method: Composition-based stats. Identities = 137/556 (24%), Positives = 246/556 (44%), Gaps = 44/556 (7%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + Q + +LG ++ + +V + + L A LY L + D + I+ Sbjct: 1 MKQLIANLRALGPVKLGAMGAVAVAVLGLMAALVLTGGPSPSATLYSGLGLKDASHITET 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L A+I + I + G S+ V + + +AR+ LA LP+ SSN G+ +FD N +SF+ Sbjct: 61 LKAAHIRYAIGNGGHSVLVTPAQLDEARLLLAQHNLPAGSSN-GFAIFDHKNPLLGSSFL 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSV 184 I RAL+ E+ RTI I G+ A+RV +V+P F A ASVM+ + P Sbjct: 120 NRIDETRALDSELERTINLIHGVEASRVQVVLPRRDEFSLSTAPAQASVMLSLAGVGPLD 179 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIE 242 ++S EAI +LVA+AVP L +++++D+ G LL N + + ++ Q+ + ++ Sbjct: 180 HESVEAILNLVASAVPGLKPNNISIVDNRGDLLAQAGRTDNSLLSSRDAALKQSTERQLS 239 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 + LAA +G + R ++ D + Y+P+ +V RS + ++ ++ S +S Sbjct: 240 EAVRSMLAAVVGPNQVRVVTAVSMDFDRSEQTSTTYNPNGQVVRSQQQTR-SKSSRSSGT 298 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 V+V N+P + K P+ L+ K + +NYEI+ H ++ R+S+AV+ Sbjct: 299 NKTVSVSNNLPGATSSKA-GPKRLDTQSKSTQTTNYEISQDVKHIVHATPQITRISVAVM 357 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 ++ + T G+ + + +A+I K+V A G + RGD + + S+ F N+L S Sbjct: 358 LDDVKTTNPKGKVIWTPRSPAQVAQIRKLVETAIGYDKSRGDVVDVQSLQFAPNELPVSA 417 Query: 423 T---VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + L ++ + LLV F +RR+ Sbjct: 418 KRSLIGRFLSSGLLMPLLRLLLTAAIGIAALLVVF--RPMVRRIIT-------------- 461 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 PP ++ L+ N A+ ++ + +I+ + Sbjct: 462 ---PPENTTAEPALLAEQNGAIAGPATTEETN---------------PVKVIADLIDRHP 503 Query: 540 ERFAKILRKWARSEIE 555 E ILR W E Sbjct: 504 EASVAILRDWLGQEGA 519 >gi|157165014|ref|YP_001466462.1| flagellar MS-ring protein [Campylobacter concisus 13826] gi|112801613|gb|EAT98957.1| flagellar M-ring protein FliF [Campylobacter concisus 13826] Length = 565 Score = 353 bits (907), Expect = 4e-95, Method: Composition-based stats. Identities = 127/565 (22%), Positives = 236/565 (41%), Gaps = 37/565 (6%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEV 57 A+L Q+ Q ++ L + ++ S I++ + + + + Y L+ + Sbjct: 5 ALLHQISQIYQ---KLSLKQKIVAGSSIVLVVAFLVFLTLYKSKSDSFVGYSVLFENISP 61 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 SD I L++ I +++++ G +I VP+S V K RI +A G+P S G+E+FDK Sbjct: 62 SDSALIVDQLNKDGIKYKLANEG-TILVPTSDVYKERIAVATLGIPKESK-IGFEIFDKQ 119 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 FG T Q + RALEGE+ARTI+S+S I A V I +P F + A PTAS+++ Sbjct: 120 E-FGATDAEQRVKFQRALEGELARTIESLSSIQKATVRIAIPKESVFTERQALPTASIVV 178 Query: 178 RAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSI 233 K I++LVAA+V NL +V +++ G L + E + + + + Sbjct: 179 ELKPGVSLNAKQIFGIKNLVAASVTNLSTENVKIVNQDGVALGDEDGEFDSDAIAQQIRY 238 Query: 234 VQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292 + ++ E I LA + G D + V + + D + + VYDP++ V + + Sbjct: 239 KREFENNYEQKIVNVLAPIVGGADKVVAKVNIDFDFDKKDTKSEVYDPNNVVRSESNIEE 298 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 Q S ++ N+ V + E +K +Q+NYEI+ K Sbjct: 299 KRQGSAPNEVGGVPGAVSNIGPVQGLDDSTLK--EQYNKSSQQTNYEISKKVTNVKGQFA 356 Query: 353 KLERLSIAVVVN------KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 + R+S AVV++ K + + G I ++ + G N RGD + Sbjct: 357 SINRVSAAVVIDGLYQSKKDKDGKPTGELEFAPLTKEQRESITNLIKQSIGYNQNRGDEV 416 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 ++ + +F + ++G FM+ + + L ++ LL+ + Sbjct: 417 SLDNFEFKTGKDVSTGEKMDGFMN---NYVMPFLPLLKYIFAALLLYIFYKKVIVPFMQK 473 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLM--------PNDNIALDSSNQDIFSHSRNLQSR 518 + E ++ I L + + L + L + Sbjct: 474 MLEETKEEEEQAQDDLEEIEMDAEDTLEKFKAARKKVEEQLGLSGEFNEDELKYDVLLEK 533 Query: 519 INSYVSKQSDL---RLLHMIEINEE 540 + V+++S+ L M++ + E Sbjct: 534 MKIVVTERSEEISNLLQDMVKNDSE 558 >gi|74055034|gb|AAZ95839.1| FliF [Aeromonas hydrophila] Length = 570 Score = 353 bits (906), Expect = 4e-95, Method: Composition-based stats. Identities = 105/555 (18%), Positives = 211/555 (38%), Gaps = 31/555 (5%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 F S T + R LIL I + I +F+ + P L ++ L + Sbjct: 31 FLSNTDVLRQITLILGLAICLAIAVFIL--LWGKEPDMRPLGT-YSTQELVSTLDYLDQQ 87 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS--SNSGYELFDKVNSFGLTSFMQE 128 I + + G S+ V + R+ L GL +++ SN G + K +SFG++ M+ Sbjct: 88 KIPYEVE--GKSVLVSAEKYADIRLRLTRAGLATNTDASNDGESILLKDSSFGVSQRMET 145 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV-YKS 187 + E ++A I+ + A+V + +P F + +P+A+V++ ++ Sbjct: 146 ERLKLSRERQLASAIEQFQNVAKAQVLLAIPKDNVFARNERKPSATVVLNLKGNALGQGE 205 Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNI 245 ++I +VA+AV L+ VTV D G+LL + + K ++ Q + E + I Sbjct: 206 VDSIVDMVASAVHGLEPTRVTVTDQNGRLLNSGSQDPVSAQTRKEFAMQQKQEVEYKQKI 265 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305 + L LG DN+ + V L+ Q+ Y+PD RS ++ S Sbjct: 266 DAILIPVLGADNYTAEVDLSLDFSQQEQTRKTYNPDLPAVRSEMTLEEN--SANGSSGGV 323 Query: 306 VTVEQNMPHVSDR--------KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 N P + + +KE N+E++T + R+ Sbjct: 324 PGALSNQPPAASNIPQQATGPNADASAAASGRSRKEATRNFELDTTVSHIRRQMGGIRRM 383 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 +++V V+ T G+ + + L + +++S G + RGDT+ + ++ F + Sbjct: 384 TVSVAVDYKSATAADGKVTREARTQPELDTLRRLLSGGLGFDVTRGDTLEVVAIPFNRPE 443 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 L N + R V A LV +L+ + L+RL D +G++ Sbjct: 444 LENVAEAPIYEQPWFWR---AVRIAASVLVIIVLIVTVVRPMLKRLLYPDARPEGDLDLD 500 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 + + + + + + + ++ Sbjct: 501 NSIVLGGDDELSLLAAQAESEPVFGVRDGHLKLPDLHRDEDL--------LKAVRALVAN 552 Query: 538 NEERFAKILRKWARS 552 + A+++++W + Sbjct: 553 EPDLAAQVIKEWVTN 567 >gi|269103174|ref|ZP_06155871.1| flagellar M-ring protein FliF [Photobacterium damselae subsp. damselae CIP 102761] gi|268163072|gb|EEZ41568.1| flagellar M-ring protein FliF [Photobacterium damselae subsp. damselae CIP 102761] Length = 581 Score = 353 bits (906), Expect = 4e-95, Method: Composition-based stats. Identities = 109/556 (19%), Positives = 226/556 (40%), Gaps = 37/556 (6%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 L R IL+LA I V L + ++ P L E S++ + AL + I Sbjct: 44 GNLDLLRQVILVLAVAICVS--LIIMVMMWIKEPEMRPL-GNYETSELITVLDALDQKKI 100 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 ++++ +G++I VP+ ++ LA G S+ G ++ K FG++ +++ Sbjct: 101 EYQL--DGNTIRVPADQYSAIKLTLARDGW-SAPEAQGDDILLKNMGFGVSQRLEQERLK 157 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEA 190 + E ++AR I+ I + A+V + +P F + +A+V + + + ++ Sbjct: 158 LSRERQLARAIEQIKQVRKAQVLLALPKQSVFVRNNQDASATVFLTLSSGATLGQQEVDS 217 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKA 248 I +VA+AVP L VTV D G+LL++ + + K + + + + I+ Sbjct: 218 IVDMVASAVPGLKPTRVTVTDQHGRLLSSGTEDPSATAKRKEYELERKQEQTLREKIDAI 277 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308 L LG+ N+ S V ++ + + + +DP RS + +D S ++ Sbjct: 278 LMPILGLGNYTSQVDVSMDFSSLEETQKQFDPSKPATRSEFILEDLNNS--NRVGGIPGA 335 Query: 309 EQNMPHVSDRKV-------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 N P + + +EE NYE++T + R +++V Sbjct: 336 LSNQPPADSAIPQDVKDLQSGKSLSDGSVHREETRNYELDTTIRHKRSQTGTIARQTVSV 395 Query: 362 VVNKGRLTEV-LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 V+ +T+ G+ D+ L +I +++ G + RGD + + SM F + Sbjct: 396 AVDYKNITDPKTGKVTRVPVSDAELEKIRRLLMGGVGFSQARGDLLEVISMPFALPEELA 455 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG----EVGG 476 + S + ALV +V +++ A+R+L + +G E G Sbjct: 456 LANPPIWENPNFSSWIRWIAAALVIIVMIIVLI---RPAMRKLLYPNQTAEGIPLDENGV 512 Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536 + + + + L D++ L +S ++ S R+ + + ++ Sbjct: 513 PMLNHHGDGITLIGSDLDAGDSLELSTSQLELPSLHRD----------EDLLKAVRALVA 562 Query: 537 INEERFAKILRKWARS 552 + A++++ W Sbjct: 563 NEPDLAAQVIKNWMSE 578 >gi|212637769|ref|YP_002314294.1| flagellar MS-ring protein [Shewanella piezotolerans WP3] gi|212559253|gb|ACJ31707.1| Flagellar FliF M-ring protein [Shewanella piezotolerans WP3] Length = 572 Score = 353 bits (906), Expect = 5e-95, Method: Composition-based stats. Identities = 119/576 (20%), Positives = 226/576 (39%), Gaps = 46/576 (7%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 A L+ L + ++ R + ++ + + + S Y LY E D Sbjct: 20 AGLNTLKEKWRDFNRGDRQ--AAVLAIFAIVAACVIVLMLWSASQGYRPLYGNQENVDTA 77 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 +I L I +R+ + + V +G+AR+ LAA+G+ + SG + D + G Sbjct: 78 QIIEVLESEGISYRLDASSGLVLVVEDKLGRARMLLAARGV-KAKVPSGMDSLDS-SGIG 135 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAI 180 + FM++ +LEGE++RTI ++ + +ARVH+ +P F + P+ASVM+ Sbjct: 136 TSQFMEQAKYRYSLEGELSRTIMALKAVRSARVHLAIPKKTLFIRQQPELPSASVMLDLY 195 Query: 181 NPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL----TANEMERNILGKSLSIV 234 + S ++ E+I +LVA +V + V V+D G L +AN+ + L Sbjct: 196 SGSNIQPENIESIVNLVAGSVTGMTPERVQVVDQNGNHLSSAISANKDITQARDRQLKYT 255 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 Q ++ + + L LG DNF+ V A++N + + + DP S V +++ Sbjct: 256 QELEQSLIGRASSMLQPILGQDNFQVQVSAKVNFNQVEETKESLDPVSVV------TQEN 309 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 Q S + + A+ + + + P + ++E +++ T +L Sbjct: 310 QSSNETNADMALGIPGALSNQPPAATPEENNNRRNINQKESRQFDVGRSVRHTRFQQMQL 369 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 E LS++V++N + + G L +++ +V A G + RGD +I S +F Sbjct: 370 ENLSVSVLLNSQA-------AGETGWSQPQLQQLSSMVQDAIGFSQARGDQFSINSFEF- 421 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL-----HNIDDA 469 + F + + L + +G +L + + LR L ++ Sbjct: 422 ------APITVAQFEPMPWWQGESYQAYLRYFIGAVLGLGMIIFVLRPLVAHLTRTVEYN 475 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS----------RI 519 K + PP + T + NDN + D S Sbjct: 476 LKDDGSNIEPKRIPPADVSPTDLTLNNDNKDDPQAMADKLMGLDKNPSNGEWSSDIGLPA 535 Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 L + R A+++ W + E Sbjct: 536 AGSPLAVKMEHLSLLANQEPARVAEVIGHWISEKDE 571 >gi|56695122|ref|YP_165469.1| flagellar MS-ring protein [Ruegeria pomeroyi DSS-3] gi|56676859|gb|AAV93525.1| flagellar M-ring protein FliF [Ruegeria pomeroyi DSS-3] Length = 534 Score = 353 bits (905), Expect = 6e-95, Method: Composition-based stats. Identities = 147/556 (26%), Positives = 238/556 (42%), Gaps = 28/556 (5%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + Q+ + SL + + I+ LV + + SP+ LY LE + Sbjct: 1 MQQIRSVWA---SLDKKKQFIVIGAALVVFLGVLGLTRMAGSPNMQLLYAGLESGSAGEV 57 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 +L + + + + G SI VP++ + R+ LA++GLP++ GYEL D ++ FG T Sbjct: 58 VRSLEQQGVPYEVR--GGSIYVPAARRDELRLTLASEGLPANGGR-GYELLDSLSGFGTT 114 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 S M + RA EGE+ARTI + + ARVHI F++ PTASV + Sbjct: 115 SQMFDAAYWRAKEGELARTIVASPHVAQARVHIANSSSNPFQRSIE-PTASVSVVPSGSE 173 Query: 184 VYK-SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242 V A AIR+LVA+AV + VTV+DS G ++ E + + + ++ Sbjct: 174 VTPAQANAIRYLVASAVSGMVAEGVTVVDSNGNVIGTPETPTSSTSEDRA------QQMR 227 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 + + + A +G N V + +T+ IRE +DP+ +V S + + + S+ Sbjct: 228 ERVLRLVEARVGRGNAIVEVSLDTVTETESIRERRFDPNGRVAISTDVEERSDASKNQTT 287 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 + VTV N+P S +T E+ NYE++ ++RLS+AV+ Sbjct: 288 D--VTVASNLPD--GDGAVGDESNSSTSATRERVNYEVSETETEILRTPGAIKRLSVAVL 343 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 VN G S + + LA + ++V +A G N RGD IT+ SM+ L N Sbjct: 344 VNGLPGAAQDGSSQFTPRPEEELAALRELVESAVGFNQDRGDVITLKSME-LPNLEPQGT 402 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482 S + L+ ++I + TL+ LGL +R + + + P Sbjct: 403 LASSSMLQGLTFDLMSLIQMATLALVTLV---LGLFVVRPILTKPAVSAPLLA---VAPP 456 Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ---SDLRLLHMIEINE 539 P S A + G I S Q+ + Q + RL MI + Sbjct: 457 PNQSGAQSAGPALTGEIDDGSPRQNQLPGAATQQRGTVPALVGSSGTPVDRLRAMIGDKQ 516 Query: 540 ERFAKILRKWARSEIE 555 E +ILR W E Sbjct: 517 EETVEILRSWLEENEE 532 >gi|126730036|ref|ZP_01745848.1| flagellar M-ring protein FliF [Sagittula stellata E-37] gi|126709416|gb|EBA08470.1| flagellar M-ring protein FliF [Sagittula stellata E-37] Length = 522 Score = 353 bits (905), Expect = 6e-95, Method: Composition-based stats. Identities = 134/535 (25%), Positives = 232/535 (43%), Gaps = 17/535 (3%) Query: 22 ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81 +++L + + + + ++ AR ++P Y LY LE + AL + + I G Sbjct: 1 MVVLGATLAMVLAVWGLARL-ASAPSYSLLYAGLENGAAGDVVKALEARGVQYDIR--GG 57 Query: 82 SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 +I VP S R+ LA++GLP++ GYEL D ++ FG TS M + RA EGE+AR Sbjct: 58 AIFVPDSDRDGLRLTLASEGLPANGGQ-GYELLDGLSGFGTTSQMFDAAYWRAKEGELAR 116 Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP-SVYKSAEAIRHLVAAAVP 200 TI S I +ARVHI F++ PTAS+ + + A A+++LVA+AVP Sbjct: 117 TIVSNPQIASARVHIANSSANPFQRDVT-PTASISVTTTGGTLSAQQARALKYLVASAVP 175 Query: 201 NLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRS 260 L+ V V+D G L+ A G + A+ + + + + A +GV N Sbjct: 176 GLEPEGVAVIDGKGGLIGAEAEHG--AGPTADDKAAL---LRDRVQRLMEARVGVGNAVV 230 Query: 261 AVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV 320 V + +++ IR +DP+ +V S + RSE +Q VTV N+P Sbjct: 231 EVSVDTVTESELIRSRSFDPEGRVVISTDTEESTDRSE-NQGGGNVTVASNLPD--GNAG 287 Query: 321 PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380 S + E+ N+E++ + T ++RL++AV+VN + G + Sbjct: 288 GGDTSSSQKAETRERVNFEVSETTREITRVPGAIKRLTVAVLVNGTYTEDGNGNQTFEPL 347 Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440 + L + +V++A G + RGD IT+ S+ F + +G ++ + + Sbjct: 348 PEDELQALRDLVASAVGYDEERGDQITLKSLSFERPEGLGTGPLEPGLFTGVIDTMRLIQ 407 Query: 441 NALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIA 500 ++ LV +L F+ L R + G + P L ++ Sbjct: 408 MGVLALVALVLGLFVVRPVLARGAGGEAGMAGALPAPGEGDAGPALDGEIEPLGGFGDLP 467 Query: 501 LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + D +S + RL ++I+ + +ILR W + E Sbjct: 468 VMGDGPDFSGLGM---VDFDSPPDEDPVDRLRNLIQERKTETVEILRSWLEEDRE 519 >gi|268678860|ref|YP_003303291.1| flagellar M-ring protein FliF [Sulfurospirillum deleyianum DSM 6946] gi|268616891|gb|ACZ11256.1| flagellar M-ring protein FliF [Sulfurospirillum deleyianum DSM 6946] Length = 574 Score = 352 bits (904), Expect = 7e-95, Method: Composition-based stats. Identities = 138/571 (24%), Positives = 247/571 (43%), Gaps = 31/571 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-----YDNLYVKLEV 57 +L+Q+ ++ T + ++ A I+V I + + N+ Y L+ K Sbjct: 6 LLNQIATLIQNLT---LRQKIVSAVSIVVLIGFLVFLMLYKNTSSSSMSGYTILFEKTTA 62 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 D I L + + +++ D G +I+VP+ MV K RI +AA G+P +S G+E+FDK Sbjct: 63 GDSALIIQQLEKDKVPYKVLDEG-TIAVPNDMVHKQRIAIAALGIPKNSK-VGFEIFDKT 120 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 FG T F Q+I +RALEGE+ARTI+S+ I A VHI +P F + TAS+++ Sbjct: 121 E-FGATDFEQKIKYIRALEGELARTIESLGPIANASVHIAIPKESVFAQKQVPATASIVL 179 Query: 178 RAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKSLS 232 K IR+LVAA++ NL +V++++ G+ L E + ++ + Sbjct: 180 NIRQGMALSVKQIVGIRNLVAASIANLPAENVSIVNQDGEPLGDEESNLFQGELVKSQIR 239 Query: 233 IVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + +H IE I LA + GVD + V + + Q VYDP+S V RS + Sbjct: 240 YKKEFEHNIEQKIINVLAPVIGGVDKVNAKVTIDFDFSQQDYVSEVYDPNS-VPRSEQSV 298 Query: 292 KDAQRSETSQP-ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 ++ + + Q N+ V + + + E K +NYEI+ K + + + Sbjct: 299 EEKREGKEPQDVGGVPGAISNIGPV--QGLESTKKGETYQKSSTTTNYEISKKVVNSKDE 356 Query: 351 NYKLERLSIAVVVN--KGRLTEVLGRSADQ----GKIDSYLAEINKIVSAATGINSRRGD 404 K++RL+ AVVV+ + G ++ + I +V G N+ RGD Sbjct: 357 FAKIKRLTAAVVVDGTYKYGLDADGNKKNELEYFPLSKEQMDAIRDVVRQTVGYNATRGD 416 Query: 405 TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 +T+++++F + SFM+ + + + L +++ L+ + Sbjct: 417 EVTVSNLEFKPLSSDGTRVPPKSFMEEVLSYLIKLTPLLKYILVAGLLFIFYKKVILPFS 476 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 K + + +V L +D ++ + Sbjct: 477 QKMVETKLDDFEDEVEPIKLEDESVEDTL--EKFKEARKKVEDQLGIGQDFNE--EALKY 532 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIE 555 +L H+ + E FA I++ R+E E Sbjct: 533 DVLLEKLKHIADEKSEDFASIIQSMIRNEGE 563 >gi|260767966|ref|ZP_05876900.1| flagellar M-ring protein FliF [Vibrio furnissii CIP 102972] gi|260615996|gb|EEX41181.1| flagellar M-ring protein FliF [Vibrio furnissii CIP 102972] Length = 579 Score = 352 bits (904), Expect = 8e-95, Method: Composition-based stats. Identities = 119/568 (20%), Positives = 235/568 (41%), Gaps = 32/568 (5%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 +L Q + S R L+L++V+ + + + +S + LY + E DV I Sbjct: 30 KLKQLWSSS-----QRNLVLSAVLAAIVAALIVVALWSSSQSFRALYGQQEQFDVGDIVS 84 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L +I +R+ + + VP V + R+ LAA+G+ + +G + + +S G + F Sbjct: 85 VLEAESISYRLQEQNGQVLVPEGEVARVRMLLAAKGI-KAKLPTGLDSLQEDSSLGTSQF 143 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI-GARPTASVMIRAINPSV 184 M+ LEGE+ RTI +++ + ARVH+ +P F + G P+ASVM+ Sbjct: 144 METARYRHGLEGELVRTIIALNAVSNARVHLAIPRQTLFVRQNGEAPSASVMLELKAGED 203 Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAIQH 239 K EAI +LV +V + V+V+D G+LL+A+ + K L + ++ Sbjct: 204 LKPEQVEAIINLVVGSVTGMKPEFVSVIDQYGRLLSADVASGDSGKVNAKYLDYQKNLEK 263 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 ++ L +G NFR V A+++ + + + D ++ V ++ ++ + Sbjct: 264 QVIQRAADMLTPIVGPSNFRVQVAADMDFSRVEETQEILD-NTPVVQNEHTVQNNSIDQI 322 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + N P V+ K P S + + E Y + + T + ++++L++ Sbjct: 323 AL--GIPGSLSNQPPVTGEK-PTQDSQNSNARSEINRQYAVGSSVRRTQYQQGQVKKLNV 379 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 +V++N D EI+ ++ A GI++ RGD++++ S +F ++ Sbjct: 380 SVLLNSAAAPNGT------AWSDQEKTEISAMLMDAVGISAARGDSLSLMSFNFTPIEIE 433 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 ++ + + VI L+ + + F L L D + E+ Sbjct: 434 APPSIPWWQDPTVQQPLRYVIGGLL----GMAMIFFVLRPLIMHLTGADRRSQELEFAPP 489 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL----LHMI 535 P + T ++ + S L + S L + L +I Sbjct: 490 PEEPYYENLQTREEREREDALNRRLEEKGIKASSGLDVSSDMLPPPGSPLEIQLKHLQLI 549 Query: 536 E-INEERFAKILRKWAR-SEIEDRYTQH 561 ER A++L++W +E + Sbjct: 550 ANEEPERVAEVLKQWVNVNEHSTVNAEP 577 >gi|163800134|ref|ZP_02194035.1| flagellar M-ring protein [Vibrio sp. AND4] gi|159175577|gb|EDP60371.1| flagellar M-ring protein [Vibrio sp. AND4] Length = 583 Score = 352 bits (904), Expect = 8e-95, Method: Composition-based stats. Identities = 123/560 (21%), Positives = 239/560 (42%), Gaps = 37/560 (6%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ Q + S R L+L++V+ + + + +S + LY + E D+ I Sbjct: 33 KKIKQLWSSS-----QRNLVLSAVLAAIVAAIIVVALWSSSQSFRPLYSQQERFDIGEIV 87 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L I +R+ + + VP V + R+ LA++G+ + +G + + +S G + Sbjct: 88 SVLESEGISYRMQEQNGQVLVPEGEVARIRMLLASKGV-KAKLPTGLDSLKEDSSLGTSQ 146 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAINPS 183 FM+ LEGE+ RTI S++ I ARVH+ +P F + P+ASVM+ Sbjct: 147 FMETARYRHGLEGELVRTIMSLNSIANARVHLAIPRQTLFVRQNTENPSASVMLELKPGE 206 Query: 184 VYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIVQAIQ 238 K EAI +LV +V + V+V+D G+LL+A+ K L ++++ Sbjct: 207 DLKSEQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLSADIASAEAGKVNAKYLEYQKSVE 266 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 +I L +G NFR V A++N + + + D ++ V R+ ++ + Sbjct: 267 KQIIQRAADMLTPIVGPSNFRVQVAADMNFSQIEETQEILD-NAPVVRNEHTIQNNSIDQ 325 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 + N P V+ + P S + + E Y + + T + ++E+LS Sbjct: 326 IAL--GIPGSLSNQPPVT-GEAPTNDSQNSNARSEVNRQYAVGSSVRRTQYQQGQVEKLS 382 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 ++V++N + + ++ ++I+ ++ A GI+ RGD++++ S +F + Sbjct: 383 VSVLLNSKVAPDGV------AWSEAEKSQISTMIMDAAGISDARGDSLSLMSFNFTPIE- 435 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL---HNIDDAKKGEVG 475 F++ + + D TV L +++G +L + LR L D E+ Sbjct: 436 FDAPSAMPWWQD------PTVQQPLRYVIGGVLGLAMIFFVLRPLIMHLTGADKPVQELE 489 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL---- 531 P + T + + + ++ + S L S L + Sbjct: 490 FAEPQEEPQYDNIQTREELEREELLNRKLSERGIAVSSGLDVSNEMLPPAGSPLEIQLKH 549 Query: 532 LHMIE-INEERFAKILRKWA 550 L +I ER A+IL++W Sbjct: 550 LQLIANEEPERVAEILKQWV 569 >gi|85711042|ref|ZP_01042102.1| flagellar M-ring protein [Idiomarina baltica OS145] gi|85694955|gb|EAQ32893.1| flagellar M-ring protein [Idiomarina baltica OS145] Length = 570 Score = 352 bits (903), Expect = 9e-95, Method: Composition-based stats. Identities = 124/566 (21%), Positives = 228/566 (40%), Gaps = 39/566 (6%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 +I+D+L F + R ++ILA I V I +F+ + + L K+E + Sbjct: 29 SIVDKLANF-----DMLRQVVVILALAICVAIAIFI--MLWAQESTFRPL-AKMETEQLV 80 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSS-SSNSGYELFDKVNSF 120 L NI++++ +G+ +SVP ++ L G+ S ++G ++ F Sbjct: 81 GTLDYLDANNIEYKV--DGNVVSVPEENYDAVKLQLTRAGVDYGQSESNGSDILMSEPGF 138 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 G++ ++ + + E ++AR I+ + + AARV + +P F + +P ASVM+ Sbjct: 139 GVSQRLERERLIHSREIQLARAIEEMRAVSAARVLLAVPKENVFARREKQPKASVMLNVK 198 Query: 181 NPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIV--QA 236 + +I +VA++V +L+ VTV D G+LL + S + Sbjct: 199 GNQSLSEEEIASIVDMVASSVTSLETSQVTVTDQNGRLLNSGSQSALAATNSREYQLERK 258 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 + E I+ L LG DN+ + V ++ + + +Y+PD RS ++ R Sbjct: 259 REEEYLNKIDSILIPVLGYDNYTAQVDVTMDFTQSEKTQRLYNPDMPAIRSEMTVEN--R 316 Query: 297 SETSQPESAVTVEQNMPHVSDR------KVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 S + N P + R + +E NYE++ T Sbjct: 317 SAGTAVGGIPGALSNQPPLESNIPEQATGAGSQRDATGSMHREATRNYELDNTVSYTRSQ 376 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 + +ERLS++V VN+ T G Q LA I +++ G + RGDTI + S Sbjct: 377 SGTIERLSVSVAVNQPMTTNADGEQVPQPASPEQLANIRRLLQGGIGFDLSRGDTIEVVS 436 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 + F + +G + R V+ LV LV L V L++L N + Sbjct: 437 VPFAQLPDLGAGETAMWDEPWFWRAARLVMGGLVILVLILAV---VRPMLKKLINP--TQ 491 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV---SKQS 527 + E S+L +M ++ I L SS D S + + Sbjct: 492 ELEDDAHSMLE--------DDEMMGDETIDLLSSQFDESSVGFGPDGSLQLPDLHKDEDL 543 Query: 528 DLRLLHMIEINEERFAKILRKWARSE 553 + ++ E +++++ W + Sbjct: 544 LKAVRALVANEPELSSQVVKAWLNED 569 >gi|145297444|ref|YP_001140285.1| flagellar MS-ring protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142850216|gb|ABO88537.1| lateral flagellar M-ring protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 584 Score = 352 bits (903), Expect = 9e-95, Method: Composition-based stats. Identities = 129/577 (22%), Positives = 239/577 (41%), Gaps = 31/577 (5%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLF-MAARFFVNSPHYDNLYVKLEVSDV 60 + ++ + ++ SL R IL +L I+ + + +S +Y LY K E+ D Sbjct: 15 SFRTRVQEGLRNWRSLSRDNKSILTIALLAAIVAGTIVVILWTSSKNYVPLYGKQELYDT 74 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L + + FR+ + I VP S + R+ LAA+G+ ++ SG E D V Sbjct: 75 ANIMEMLEKEQVPFRLEKSSGQILVPESQLAHVRMALAARGV-RAAMPSGLEGLDTVTGL 133 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRA 179 G + FM+ ALEGE+ARTI S+ + +ARVH+ +P F + +P+ASVM+ Sbjct: 134 GTSEFMEGARYRHALEGELARTIISLDAVRSARVHLAIPKRTLFVGRDEEKPSASVMMDL 193 Query: 180 INPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK----SLSI 233 + EAI +LVA ++ + G VT++D G+LL+A ++ GK + Sbjct: 194 QPGQAMEPGQVEAIANLVAGSISGMKPGAVTIVDQAGQLLSAELGDKAGFGKQSVQQMEY 253 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293 V+ ++ I + L LG NFR + A++N + + + DP V + S Sbjct: 254 VRKLEQYIRQRASDMLYPMLGTSNFRVQIAADVNFNAVEETQQQLDPQGVVTKESTKSDK 313 Query: 294 AQRS---------ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKS 344 + PE+ EQ + + ++ T+++E YE + Sbjct: 314 TIDALALGIPGALSNRPPETTPKNEQPAQNQVEANTDTQKNDSRTERQEVSKQYENSRTI 373 Query: 345 IATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD 404 + T + +LE++++++++N+ + G L +I ++V + G ++ RGD Sbjct: 374 VHTRYQQGRLEKMNVSILLNQQSAPK-------DGWSAEQLEQIRQMVERSVGFDNARGD 426 Query: 405 TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 I++ DF ++ L+ L + L R Sbjct: 427 QISLQVFDFTAAVPIVPPESGWWETPYWQDSLRYLVGGLLGLTLVFFGIRPLVKHLVRTQ 486 Query: 465 NIDDAKKGEVGGK------SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 + D + E + + +A+T +M N I D+ + FS Sbjct: 487 QLPDEEPTEEQDEPQEPTVGLSMRRDDDAALTAPMMSNGLIRADNQMEPQFSSLNLEALP 546 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + L ++E + R A+++R W + Sbjct: 547 EPGSELEVQLQHLQLLVEKDTARVAEVVRSWVSGNEQ 583 >gi|110677673|ref|YP_680680.1| flagellar MS-ring protein [Roseobacter denitrificans OCh 114] gi|109453789|gb|ABG29994.1| flagellar M-ring protein FliF, putative [Roseobacter denitrificans OCh 114] Length = 540 Score = 352 bits (903), Expect = 1e-94, Method: Composition-based stats. Identities = 149/555 (26%), Positives = 242/555 (43%), Gaps = 21/555 (3%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + Q + T L R +I+A +A +P+ LY LE + A Sbjct: 1 MQQIVTAWTGLPLRRQVIVALATGAMFFAILAMSRMATAPNMTLLYAGLENGAAGDVVAA 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L + F + G SI V SS + R+ LA++GLP++S+ GYEL D ++ FG TS M Sbjct: 61 LEQRGAVFEVR--GGSIFVDSSQRDELRMTLASEGLPANSTQ-GYELLDTLSGFGTTSQM 117 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS-VY 185 + RA EGE+ARTI S I ARVHI F++ G P ASV + + Sbjct: 118 FDAAYWRAKEGELARTIVSSPHISMARVHIASTGSNPFQR-GVTPKASVSVTPSGAAITP 176 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNI 245 + +AIR LV++AV L DV V+D+ G L+ + +G ++ + Sbjct: 177 QQGKAIRFLVSSAVAGLASEDVAVIDANGALIGNADEVAPTIGGEDKA-----DVLKARV 231 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305 + L A +G N V + +++ IRE ++DP+S+V S ++ S + Sbjct: 232 QRLLEARVGFGNSVVEVSVDTVTESEAIRERIFDPESRVAISTDT-EERNTSSSEAGGGD 290 Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365 VTV N+P S ++ E+ NYE++ + ++R+++AV+VN+ Sbjct: 291 VTVASNLPDQ--DGAGGENSSSQNNETRERVNYEVSETEREILREPGAIKRVTVAVLVNE 348 Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425 +T+ G+ + +S L + +V++A G + RGD ITI SM L + Sbjct: 349 MTITDEAGQETVTPRDESELEALRDLVASAVGFDEARGDIITIKSMGLQSVPLQGTAAG- 407 Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD-AKKGEVGGKSILSPPP 484 ++S V++A+ + L+ LGL +R L +D V + Sbjct: 408 ---TSLMSNFNIDVMSAIQMAILALVTLILGLFVVRPLLARNDLNDAPAVAALPGATDGE 464 Query: 485 ISSAVTTGLMPNDNIALDSSN--QDIFSHSRNLQS-RINSYVSKQSDLRLLHMIEINEER 541 G + D+ L D S L I S +S+ RL MI ++ Sbjct: 465 TDGLGLDGEIDGDDFQLPDLPVISDFGDASGELPDLNIGSGMSEDPVDRLRTMIGERQDE 524 Query: 542 FAKILRKWARSEIED 556 +ILR W + E Sbjct: 525 TVEILRSWLEDKEES 539 >gi|34558286|ref|NP_908101.1| flagellar MS-ring protein [Wolinella succinogenes DSM 1740] gi|34484005|emb|CAE11001.1| FLAGELLAR BASAL-BODY M-RING PROTEIN FLIF [Wolinella succinogenes] Length = 577 Score = 352 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 119/571 (20%), Positives = 236/571 (41%), Gaps = 35/571 (6%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNS----PHYDNLYVKLEVS 58 + +Q+ + + +++IL +++ V + + Y L+ + Sbjct: 6 LFNQIQNLYAKLN--LKQKLVILGTIVGVVAFVSFLIVYNGGKGKSLDGYAVLFEGVSPQ 63 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 D I L ++ I +++ + ++I +P V + RI LA+ G+P SS G+E+FDK Sbjct: 64 DGALIIQHLEQSKIPYKLPKD-NTILIPEEKVYEERIKLASSGIPKSSK-VGFEIFDKQE 121 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178 FG T F Q++ VRA EGE++RTI+S++ I A VHI +P F PTASV++R Sbjct: 122 -FGATDFDQKVKFVRATEGELSRTIESLTPIEKASVHIAIPKDSVFVSKETPPTASVVLR 180 Query: 179 AINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLSI 233 I++LVAAA+ L+ +V +++ G+ L + + + + Sbjct: 181 LRPNMALTPAQVLGIKNLVAAAITRLEPENVRIVNENGEPLGEGDELTTSKEMAAVQMRY 240 Query: 234 VQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292 Q + +E I LA + G D + V AE + +Q + ++DP++ V L + Sbjct: 241 KQNFERSVEEKIVNILAPIIGGADRVVAKVTAEFDFSQKQSTQELFDPNNVVRSEQTLEE 300 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 + + + N+ V + + + +K + +N+EI+ + + Sbjct: 301 KREGFKPKEIGGVPGAVSNIGPV--QGLDSQDVRDKYEKSQTTTNFEISKTVSSIKGEFA 358 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQ----GKIDSYLAEINKIVSAATGINSRRGDTITI 408 ++RLS AVVV+ T V + + D + +IN +V A G + RGD T+ Sbjct: 359 TIKRLSAAVVVDGKYKTSVNEQGNEVLEYIPLSDEEMEKINGLVRQAMGFSGTRGDEATV 418 Query: 409 TSMDF-LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463 ++ +F ++ + T F+ L + + L +++ L++ + R+ Sbjct: 419 SNFEFDAKSAGYAPKTPVERFVQGLEKFMGPFMPMLKYVIVGLILFVFYKKIIVPFAERM 478 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 + + + E+ L + M + + Sbjct: 479 LEVHEDEDEEIESLIKLDDDDEDALNKFNEMKRRVEEQLGLGSGLSEDEIKYDVLLE--- 535 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEI 554 ++ ++ E A I + R E+ Sbjct: 536 ------KMKNIAMEKPEEVAGIFQTLIRDEL 560 >gi|258622516|ref|ZP_05717538.1| flagellar M-ring protein [Vibrio mimicus VM573] gi|258585216|gb|EEW09943.1| flagellar M-ring protein [Vibrio mimicus VM573] Length = 585 Score = 352 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 116/565 (20%), Positives = 236/565 (41%), Gaps = 39/565 (6%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 ++D+L Q + S R L+L++V+ + + + + ++ LY + E D+ Sbjct: 30 KLIDKLKQLWSSS-----QRNLVLSAVLAAIVAAIIVVALWSSVQNFRPLYSQQERFDIG 84 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L I +R+ + + V V + R+ LA +G+ + +G++ + +S G Sbjct: 85 EIVSVLESEGISYRMQEENGQVLVQEGEVARIRMLLATKGV-KAKLPTGFDSLKEDSSLG 143 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG-ARPTASVMIRAI 180 + FM+ LEGE+ RTI S++ + ARVH+ +P+ F + P+ASV++ Sbjct: 144 TSQFMETARYRHGLEGELVRTILSLNAVTNARVHLAIPNQTLFVRQNRENPSASVLLELK 203 Query: 181 NPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQ 235 K EAI +LV +V + V+V+D G+LL+A+ E + K L + Sbjct: 204 PGKNLKPQQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLSADVTSAAEGEVNAKYLEYQK 263 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 ++ +I L +G NFR V A+++ + E + D D+ V R ++ Sbjct: 264 NVEKQIIQRAADMLTPIVGPTNFRIQVAADMDFSQVEETEEILD-DTPVVRDEHTIQNNS 322 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPR--SLENTDKKEEQSNYEINTKSIATTHDNYK 353 + + N P ++ + S + E Y + + T + + Sbjct: 323 VDQIAL--GVPGSLSNQPPITGKAGEKQTKDSQNTNARSEVNRQYAVGSNIRRTQYQQGQ 380 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 +++LS++V++N + + +I+ +V A G++ RGD++++ S +F Sbjct: 381 IKKLSVSVLLNSQAAPNG------KAWTSAEKKQISTMVMDAVGVSQGRGDSLSLMSFNF 434 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL--------RRLHN 465 + + T+ + + VI ++ + + F L L RR+ Sbjct: 435 TPIDIEAAPTIPWWQDPTVQQPMRYVIGGML----GIAMIFFVLRPLIMHLTGADRRVQE 490 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 ++ A++ E+ +++ + + SS DI S L + Sbjct: 491 LEFAEQEELIDENLQTREESEREEALNRRLLEKGIAASSGLDIASDMLPLP----GSPLE 546 Query: 526 QSDLRLLHMIEINEERFAKILRKWA 550 L + ER A++L++W Sbjct: 547 IQLKHLQLIANEEPERVAEVLKQWV 571 >gi|302389658|ref|YP_003825479.1| flagellar M-ring protein FliF [Thermosediminibacter oceani DSM 16646] gi|302200286|gb|ADL07856.1| flagellar M-ring protein FliF [Thermosediminibacter oceani DSM 16646] Length = 517 Score = 352 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 124/566 (21%), Positives = 224/566 (39%), Gaps = 68/566 (12%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + Q+ +F+ S + + +++ A ++++ L +F++ P Y L+ L + D Sbjct: 6 KLKHQVSEFWNSRNKVQKISLILGALLVILTAGLLG---YFISRPSYSPLFTNLSMQDAG 62 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L + I ++I+D G +I V S V K R++LA +GLP ++F+K G Sbjct: 63 EIVKRLEDMKIPYKIADGGKTILVESKDVYKTRLNLAQEGLPKGGVLGFSDIFNKT-KLG 121 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI--GARPTASVMIRA 179 T + +++ +AL+GE+ RTI+ + + +ARVHIV P F + P+A+V ++ Sbjct: 122 TTDWERQLQYTQALQGELTRTIEEMEQVESARVHIVQPRESLFIEPNAQKEPSAAVFLKL 181 Query: 180 INP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL-----LTANEMERNILGKSLS 232 + I +LVA +V L ++T++D G++ L+ + + + L Sbjct: 182 KPGVEIAEEEIRGIINLVAHSVEGLKPENITIVDEFGRVLSNIPLSEEQNTKEEINSQLV 241 Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS-----KVERS 287 I Q +++ N+ L G N V A+LN D + + ++ P S + RS Sbjct: 242 IQNNFQKQLQANVQSLLEQIFGPGNVAVRVNAQLNFDKKTVESRLFTPVSSETGDGILRS 301 Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 ++ ++ S P N+P + P N K E NYE+N Sbjct: 302 VQELREHFSGTGSVPTGNPGTGTNIPGY---QQPNTNGTSNYQKTEVIRNYEMNESKENV 358 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 T +++L+++VVVN+ D +I +V A G + +R D IT Sbjct: 359 TVAPGTVKKLTVSVVVNRD-------------LNDEEKDKIATLVGNAIGYDIQR-DQIT 404 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + M F DILS+ A RR Sbjct: 405 VEGMTFNNQ-----------LADILSKQLAEENQ-------------------RREMQRL 434 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 + + A+ M + +A + + + + ++ Sbjct: 435 LIIISAIAAAILFIIAHRIIAMKRRRMEEEKLAYELAAAQQAASQLSDDVSADNREVFSE 494 Query: 528 DLRLLHMIEINEERFAKILRKWARSE 553 +L E AKILR W E Sbjct: 495 IEKLAR---KRPEDVAKILRTWLNEE 517 >gi|289548426|ref|YP_003473414.1| flagellar M-ring protein FliF [Thermocrinis albus DSM 14484] gi|289182043|gb|ADC89287.1| flagellar M-ring protein FliF [Thermocrinis albus DSM 14484] Length = 496 Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats. Identities = 137/555 (24%), Positives = 235/555 (42%), Gaps = 64/555 (11%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M L + L + LIL+ + ++ + +S Y LY L D+ Sbjct: 1 MDYRTLLRELKTKIEQLSTKQKLILSGAVAAGLISLLLMVLLASSARYVPLYSGLSQEDM 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 + + L + + +++ +G S+ VP V R+ LAA+G+PS GYE+FDK N F Sbjct: 61 SAVLSELEKEGVPYKLGGDGRSVLVPEDKVRDIRLKLAAKGIPSKGV-VGYEIFDKSN-F 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 ++ F ++ RA+EGE+A+TI I G+ A+V+I MP F + +PTASV++R Sbjct: 119 AVSDFQNQVNFKRAVEGELAKTIMRIQGVEEAKVNIGMPQRSIFVREEEQPTASVLVRLK 178 Query: 181 NP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQAI 237 + +AIR+LVA +VP LD +V V+D G+ LT+ E ++ + L I + Sbjct: 179 PGYELSPEQVKAIRNLVALSVPRLDPKNVVVIDDRGRDLTSLLGEEMDLTERELRIKREY 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + ++E + K L LGV N + V A++++ ++ +E +YDPD S + K+ Sbjct: 239 EEQVEKKLQKILEEALGVGNVKVRVSADIDLTRRESKEEIYDPDMTAVVSQQKKKERVLG 298 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 T N+P + +++ E +NYE++ K I T K+ RL Sbjct: 299 GTL--GGVPGTASNIPPATGVGAGGQTL---SERTETITNYEVSKKQIYTEEPLVKVRRL 353 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 S+ VVVN + L I ++V A GI+ RRGDTI++ ++ F Sbjct: 354 SVGVVVNSQ-------------LKNVNLDSIRELVQTAAGIDQRRGDTISVVAVPFHRPT 400 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 L + R + I V + L+ + L R+ + Sbjct: 401 LGEEKAKE--------RVYWPYIVGGVLIASLLVFSLLVFMRRRKQVPLPTPPTAVPPVP 452 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 M + I + + + + + Sbjct: 453 E--------------TMVTEEIRVKAKEVASLEA-------------------VAELAKQ 479 Query: 538 NEERFAKILRKWARS 552 ++ AKI++ W RS Sbjct: 480 EPQKVAKIIKSWLRS 494 >gi|262173382|ref|ZP_06041059.1| flagellar M-ring protein FliF [Vibrio mimicus MB-451] gi|261890740|gb|EEY36727.1| flagellar M-ring protein FliF [Vibrio mimicus MB-451] Length = 585 Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats. Identities = 115/565 (20%), Positives = 236/565 (41%), Gaps = 39/565 (6%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 ++++L Q + S R L+L++V+ + + + + ++ LY + E D+ Sbjct: 30 KLINKLKQLWSSS-----QRNLVLSAVLAAIVAAIIVVALWSSVQNFRPLYSQQERFDIG 84 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L I +R+ + + V V + R+ LA +G+ + +G++ + +S G Sbjct: 85 EIVSVLESEGISYRMQEENGQVLVQEGEVARIRMLLATKGV-KAKLPTGFDSLKEDSSLG 143 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG-ARPTASVMIRAI 180 + FM+ LEGE+ RTI S++ + ARVH+ +P+ F + P+ASV++ Sbjct: 144 TSQFMETARYRHGLEGELVRTILSLNAVTNARVHLAIPNQTLFVRQNRENPSASVLLELK 203 Query: 181 NPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQ 235 K EAI +LV +V + V+V+D G+LL+A+ E + K L + Sbjct: 204 PGKNLKPQQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLSADVTSAAEGKVNAKYLEYQK 263 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 ++ +I L +G NFR V A+++ + E + D D+ V R ++ Sbjct: 264 NVEKQIIQRAADMLTPIVGPTNFRIQVAADMDFSQVEETEEILD-DTPVVRDEHTIQNNS 322 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPR--SLENTDKKEEQSNYEINTKSIATTHDNYK 353 + + N P ++ + S + E Y + + T + + Sbjct: 323 VDQIAL--GVPGSLSNQPPITGKAGEKQTKDSQNTNARSEVNRQYAVGSNIRRTQYQQGQ 380 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 +++LS++V++N + + +I+ +V A G++ RGD++++ S +F Sbjct: 381 IKKLSVSVLLNSQAAPNG------KAWTSAEKKQISTMVMDAVGVSQGRGDSLSLMSFNF 434 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL--------RRLHN 465 + + T+ + + VI ++ + + F L L RR+ Sbjct: 435 TPIDIEAAPTIPWWQDPTVQQPMRYVIGGML----GIAMIFFVLRPLIMHLTGADRRVQE 490 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 ++ A++ E+ +++ + + SS DI S L + Sbjct: 491 LEFAEQEELIDENLQTREESEREEALNRRLLEKGIAASSGLDIASDMLPLP----GSPLE 546 Query: 526 QSDLRLLHMIEINEERFAKILRKWA 550 L + ER A++L++W Sbjct: 547 IQLKHLQLIANEEPERVAEVLKQWV 571 >gi|224370787|ref|YP_002604951.1| FliF [Desulfobacterium autotrophicum HRM2] gi|223693504|gb|ACN16787.1| FliF [Desulfobacterium autotrophicum HRM2] Length = 571 Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats. Identities = 130/581 (22%), Positives = 241/581 (41%), Gaps = 41/581 (7%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +++Q + +K + R +++ V+L F A + N Y + Y L D Sbjct: 4 LVEQTINLYK---EMPLARKILMGVVVLAMFGGFAAMFIWANKTEYKSAYSGLNQEDAAA 60 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L A +RI G++I VP+ V R+ +A G+P S G+E+FDK + FG Sbjct: 61 IVDRLKTAKTPYRIEAGGATIMVPADQVYDVRLSMAKDGIPKGSG-VGFEIFDKTD-FGT 118 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T F+Q+I R RA++GE+ARTI++ + ARV IV P F + +P+AS+++ + Sbjct: 119 TEFVQKINRRRAIQGELARTIRAFDEVKDARVMIVFPKDSVFVEETKKPSASILLELKSD 178 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--------RNILGKSLSIV 234 A+ HLVA+A+ +L VT++D+TG++L + E RN+ Sbjct: 179 LSEDKVAAVAHLVASAIEDLTPKLVTIVDTTGRILFEGKSEEEKAKIDARNLADSQYKYK 238 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLS 291 + + I L +G D V AE++ T E +YDP ++ RS ++ Sbjct: 239 MRYETTLAERIQTMLERIVGKDKAIVRVTAEMDFSTSNTNEEIYDPFERETTFVRSKQIL 298 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + ++ +V +P ++E TDKK + NYE++ ++ T Sbjct: 299 AETGQTRQDSAGIPSSVNPVVPP---GGTADASAMEMTDKKNDTINYELSRRTRQTIKPM 355 Query: 352 YKLERLSIAVVVNKGRLTEVLGRS----ADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 ++R+S+A VV+ + + + + + IV A G N R D ++ Sbjct: 356 AVVQRVSVAAVVDGKYEFKTDDSGNRSKTYVPRSQVEMQQFSDIVVKAMGFNETRQDQVS 415 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + F +++ + + + I ++ ++ L +R + Sbjct: 416 MECFPFASIDELGVVEPELTGWRAVQKAYGRTIANILLVILL------FLFVIRPIIKTF 469 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 + V +++ T P + +D+ Q F + ++R S Sbjct: 470 QGIQSTVEKETLPGGGIDIIEDGTEPQPLAFVDMDADEQRTFLDEMDKEARDAYIDKMNS 529 Query: 528 DLRLLHMIEIN-EERFA-----------KILRKWARSEIED 556 + R +M I E+ A I++ W E+ Sbjct: 530 EERAAYMNNIKIPEKAAYYARKDVIKATNIIKVWLSEVEEE 570 >gi|330828799|ref|YP_004391751.1| flagellar M-ring protein FliF [Aeromonas veronii B565] gi|328803935|gb|AEB49134.1| Flagellar M-ring protein FliF [Aeromonas veronii B565] Length = 569 Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats. Identities = 105/552 (19%), Positives = 219/552 (39%), Gaps = 26/552 (4%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 F S T + R LIL I + I +F+ + P L ++ + L + Sbjct: 31 FLSNTDVLRQITLILGLAICLAIAVFIL--LWGKEPDMRPLGT-YTTQELVKTLDFLDQQ 87 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSS--SSNSGYELFDKVNSFGLTSFMQE 128 I + + +G S+ V + ++ L GL ++ S+ G ++ K +SFG++ M+ Sbjct: 88 KIPYEV--DGKSVLVNAESYPTIQLALTRAGLANATDSNIGGEDILLKDSSFGVSQRMES 145 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV-YKS 187 + E ++A I+ + A+V + +P F + +P+A+V++ ++ Sbjct: 146 ERLKLSRERQLASAIEQFQNVAKAQVLLAIPKDNVFARNERKPSATVVLNLKGAALGQGE 205 Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNI 245 ++I +VA+AV L+ VTV D G+LL + + K ++ Q + E + I Sbjct: 206 VDSIVDMVASAVHGLEPTRVTVTDQNGRLLNSGSQDPISAQTRKEFAMQQKQELEYKQKI 265 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP--- 302 + L LG DN+ + V L+ Q+ Y+PD RS ++ S ++ Sbjct: 266 DAILIPVLGADNYTAEVDLSLDFSQQEQTRKTYNPDLPAVRSEMTMEENSASGSNGGVPG 325 Query: 303 --ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 + N+P + + +KE N+E++T T + R++++ Sbjct: 326 ALSNQPPAASNIPEEATGGDGASAAASGRSRKEATRNFELDTTVSHTRRQMGGIRRMTVS 385 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 V V+ + G + + + L + +++S G + RGDT+ + ++ F +L Sbjct: 386 VAVDYKAVPGADGAVTREARTQAELDTLRRLLSGGLGFDVTRGDTLEVVAIPFNRPELDT 445 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 V + R V A LV +L+ + L+RL D +GEV + Sbjct: 446 VAEVPLYDQPWFWR---AVRIAASVLVIIVLIVTVVRPMLKRLLYPDAKPEGEVDFDNHT 502 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 ++ + + + + + ++ + Sbjct: 503 VLGGDDELSLLSAQVENDQVFGVRDGQLKLPDLHRDEDL--------LKAVRALVANEPD 554 Query: 541 RFAKILRKWARS 552 A+++++W + Sbjct: 555 LAAQVIKEWVTN 566 >gi|258624661|ref|ZP_05719596.1| flagellar M-ring protein [Vibrio mimicus VM603] gi|258583053|gb|EEW07867.1| flagellar M-ring protein [Vibrio mimicus VM603] Length = 585 Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats. Identities = 115/566 (20%), Positives = 239/566 (42%), Gaps = 41/566 (7%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 ++D+L Q + S R L+L++V+ + + + + ++ LY + E D+ Sbjct: 30 KLIDKLKQLWSSS-----QRNLVLSAVLAAIVAAIIVVALWSSVQNFRPLYSQQERFDIG 84 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L I +R+ + + V V + R+ LA +G+ + +G++ + +S G Sbjct: 85 EIVSVLESEGISYRMQEENGQVLVQEGEVARIRMLLATKGV-KAKLPTGFDSLKEDSSLG 143 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG-ARPTASVMIRAI 180 + FM+ LEGE+ RTI S++ + ARVH+ +P+ F + P+ASV++ Sbjct: 144 TSQFMETARYRHGLEGELVRTILSLNAVTNARVHLAIPNQTLFVRQNRENPSASVLLELK 203 Query: 181 NPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQ 235 K EAI +LV +V + V+V+D G+LL+A+ E + K L + Sbjct: 204 PGKNLKPQQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLSADVTSAAEGKVNAKYLEYQK 263 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 ++ +I L + NFR V A+++ + E + D D+ V R ++ Sbjct: 264 NVEKQIIQRAADMLTPIVSPTNFRIQVAADMDFSQVEETEEILD-DTPVVRDEHTIQNNS 322 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPR--SLENTDKKEEQSNYEINTKSIATTHDNYK 353 + + N P ++ + S + E Y + + T + + Sbjct: 323 VDQIAL--GVPGSLSNQPPITGKAGEKQTKDSQNTNARSEVNRQYAVGSNIRRTQYQQGQ 380 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 +++LS++V++N + + +I+ +V A G++ RGD++++ S +F Sbjct: 381 IKKLSVSVLLNSQAAPNG------KAWTSAEKKQISTMVMDAVGVSQGRGDSLSLMSFNF 434 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL--------RRLHN 465 + + T+ + + VI ++ + + F L L RR+ Sbjct: 435 TPIDIEAAPTIPWWQDPTVQQPMRYVIGGML----GIAMIFFVLRPLIMHLTGADRRVQE 490 Query: 466 IDDAKKGEVGGKSI-LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 ++ A++ E+ +++ V + IA ++ + S L + Sbjct: 491 LEFAEQEELIDENLQTREESEREEVLNRRLLEKGIA---ASSGLDIASDMLPLPGSPLEI 547 Query: 525 KQSDLRLLHMIEINEERFAKILRKWA 550 + L+L + ER A++L++W Sbjct: 548 QLKHLQL--IANEEPERVAEVLKQWV 571 >gi|163750550|ref|ZP_02157788.1| flagellar M-ring protein [Shewanella benthica KT99] gi|161329705|gb|EDQ00694.1| flagellar M-ring protein [Shewanella benthica KT99] Length = 567 Score = 350 bits (899), Expect = 3e-94, Method: Composition-based stats. Identities = 100/535 (18%), Positives = 210/535 (39%), Gaps = 35/535 (6%) Query: 37 MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIH 96 + + P Y L K++ ++ ++ L + ID+RI + I VP ++ Sbjct: 52 VFIMLWAQEPEYRPL-GKMDTQEMVKVLDVLDKNKIDYRIDID--VIKVPEDQYQAVKLM 108 Query: 97 LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHI 156 L+ +G+ +S ++ Y + + FG++ M+ + E +AR I+ + I A+V + Sbjct: 109 LSREGIDGASRSNDY--LSQDSGFGVSQRMELARLKHSQELNLARAIEELRSINRAKVIL 166 Query: 157 VMPDMGSFRKIGARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 +P F + A+P+A+V++ + + +A+ +VA+AV L VTV DS G+ Sbjct: 167 AIPKENVFARNRAKPSATVVLNVRRGGLGQEEVDAVVDIVASAVQGLIPTRVTVTDSNGR 226 Query: 216 LLTANEME--RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI 273 LL + + + + Q + E + L LG +NF S V ++ + Sbjct: 227 LLNSGSQDAVSARARRESDLAQQKEAEYRTKVQSILMPILGPENFTSQVDVTMDFTAVEQ 286 Query: 274 REIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPH--------VSDRKVPLPRS 325 Y+PD RS + ++ S N P L + Sbjct: 287 TSKRYNPDLPALRSEMIVENN--SNGGSASGIPGALSNQPPMESDIPQNALTTDAQLNSA 344 Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT-EVLGRSADQGKIDSY 384 + +E N+E+NT T + R+S++V VN T G+ + + Sbjct: 345 RRGSSHREATRNFELNTTISHTRQQVGTVRRISVSVAVNYKTGTLGEDGQINRVPRTEQE 404 Query: 385 LAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALV 444 LA I +++ A G +++RGD + + ++ F++ + ++ R + ++ Sbjct: 405 LANIRRLLEGAVGFSTQRGDVLEVVTVPFMDQLIEELPAPELWEQPWFWRALKLGMGGVI 464 Query: 445 FLVGTLLVTFLGLHALRRLHNIDDAKKGEVG--GKSILSPPPISSAVTTGLM--PNDNIA 500 L L+ F+ L+RL + G + ++ T G++ P + Sbjct: 465 ILA---LILFIVRPMLKRLIYPASVNIPDEPKFGDELAEIEDQFASDTLGMLNRPEAEYS 521 Query: 501 LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + I + + ++ E ++++ W + + + Sbjct: 522 YADDGSILIPDLHKDDDMIKA---------IRALVANEPELSTQVIKGWLQQDEQ 567 >gi|114764044|ref|ZP_01443283.1| flagellar M-ring protein FliF [Pelagibaca bermudensis HTCC2601] gi|114543402|gb|EAU46417.1| flagellar M-ring protein FliF [Roseovarius sp. HTCC2601] Length = 546 Score = 350 bits (899), Expect = 3e-94, Method: Composition-based stats. Identities = 138/556 (24%), Positives = 231/556 (41%), Gaps = 17/556 (3%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +L QL + SLG R +++ + L I +A + P LY LE Sbjct: 2 VLQQLATIWG---SLGGRRRVLVIAATLATIAAVLAMGRMASQPSMALLYAGLEQGAAGE 58 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + AL I + + G +I VP R+ LA++GLP++S N GYEL D ++ FG Sbjct: 59 VVAALEARGIPYEVR--GGAILVPDMQRDSLRMTLASEGLPANS-NQGYELLDGLSGFGT 115 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 TS M + RA EGE+ARTI + I ARVHI F++ + P+AS+ + Sbjct: 116 TSQMFDAAYWRAKEGELARTIVASPYIATARVHIANSTANPFQRDVS-PSASISVTTNGD 174 Query: 183 -SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEI 241 A A+++LVA+AVP L DV V+D G L+ A + G + A+ + Sbjct: 175 VLSPVQARALKYLVASAVPGLMPEDVAVIDGKGGLIGAEDDSG--AGPTAEDRAAL---L 229 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + + + A +G+ N V + +++ IR+ +DP+ +V +++ S Sbjct: 230 RDRVQRLVEARVGLGNAVVEVSVDTVTESETIRQRQFDPEGRVVI-STDTEEESSSSQDS 288 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 V+V N+P S + + E+ NYE++ T ++RL++AV Sbjct: 289 GGGDVSVASNLPD--GEAGGGDSSQSQSSETRERVNYEVSETMREVTRMPGAIKRLTVAV 346 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 +VN G + LA + +V++A G RGD ITI SM F + + Sbjct: 347 LVNGTLAAGADGAEQFVPLPEGELAALRDLVASAVGFEEARGDAITIRSMPFERPEGLGT 406 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 G V+ + + + ++ +V +L F+ L + Sbjct: 407 GPVEPGWFSMPLDPMTLIQIGVLAVVALILGLFVVRPILTAPAQAALPGATDGALALPGG 466 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 A G + + + + +S + RL +IE + Sbjct: 467 GVEPGGAALDGEIDDGDFGGLPALGGGGDFGGMGMVDFDSPAEEDPVDRLRGLIEERKSE 526 Query: 542 FAKILRKWARSEIEDR 557 +ILR W + EDR Sbjct: 527 TVEILRSWL-DDGEDR 541 >gi|91200223|emb|CAJ73267.1| similar to flagellar MS ring protein [Candidatus Kuenenia stuttgartiensis] Length = 584 Score = 350 bits (898), Expect = 4e-94, Method: Composition-based stats. Identities = 123/580 (21%), Positives = 241/580 (41%), Gaps = 42/580 (7%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 QL +K + + I+ S+ L ++ + + P + LY +L + I Sbjct: 11 QLKNVWKEISF---SHKFIMISLTLSFLIGIVGVMQWARKPDFGLLYGELSPKESGEIIN 67 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L EANI +RIS NG++I VP+ + + R+ A++GLP +GYEL DKV FG + F Sbjct: 68 HLREANIPYRISGNGTTILVPNDKIYEMRLKFASEGLPHE--QTGYELLDKV-GFGSSDF 124 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 +Q+I RA++GE+A+TI+ + + A+VH+ +P+ F + PTASV+++ Sbjct: 125 IQKINYRRAIQGELAKTIKHLDFVDWAQVHLAIPEKSLFVEDEKPPTASVVLKLKTGGKL 184 Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLSIVQAIQHE 240 K +I HLV+++V L +VTV D+ G LL+ E + L I + I+ Sbjct: 185 KPERVASIVHLVSSSVEGLIPENVTVTDTRGNLLSEKESPFSQTGASNDQLEIKKKIEEY 244 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 L +G V A+L+ ++I +DP+ +V + ++ Sbjct: 245 YVAKAQDMLDRIVGAGKSVVRVSADLDFRHVDEKQIEFDPERRVPKVQTVTTKVSGGTPF 304 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 ++ N+ + L S + +++ Q+ YE++ + L+RLS+A Sbjct: 305 SGGGVPGMQANL--NLSQSSMLQSSGSSEEEETAQTQYELSKVERMVSDHGANLKRLSVA 362 Query: 361 VVVNKGRLT----EVLGRSADQGKIDSYLAEINKIVSAATGINS-RRGDTITITSMDFLE 415 V+V+ + + + + + I +V A G+N R D+ I ++ F E Sbjct: 363 VLVDGKYEKIESEDGKIQQTYVSRNNEEMKGIASLVKQALGVNMVSRNDSFEIQNVQFYE 422 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA------ 469 + + + L+ L +++++ Sbjct: 423 ADYAEEEAILKKEQQ--KEFMLKLAKNGSLGITVLMFLMFMLRSMKKIKKKAAPTVEMEH 480 Query: 470 --KKGEVGGKSILSPPPISSAVTTGLMPNDNIA------------LDSSNQDIF--SHSR 513 KG+ G + +A L I+ L+++ +++ S Sbjct: 481 FSAKGKSGKQGFAKMQHDDTAGRNKLFEELRISKERQGIQYTKEELEAAVEEMLAMEESE 540 Query: 514 NLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 N + + ++ +L ++ + + + L++W E Sbjct: 541 NPEEIMEGMKREKKRKLILGHMQKDTDLTSTALKRWIEGE 580 >gi|326796470|ref|YP_004314290.1| flagellar M-ring protein FliF [Marinomonas mediterranea MMB-1] gi|326547234|gb|ADZ92454.1| flagellar M-ring protein FliF [Marinomonas mediterranea MMB-1] Length = 558 Score = 350 bits (897), Expect = 4e-94, Method: Composition-based stats. Identities = 121/562 (21%), Positives = 222/562 (39%), Gaps = 36/562 (6%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 ++ L R L L + I + +AA + + P Y + + + ++I L Sbjct: 15 MELLTGFNKLTVIRQLALMVGLAASIAIALAAVLWSSGPDYKPVLSSITDYNADQIVEIL 74 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + +I F++ N ++ V +AR+ LA G+ S G E+ D+ + G + F++ Sbjct: 75 NTNSIPFKLDQNTGALLVEDEYYHQARLKLAGSGIV-SDKIVGLEIMDQDQALGTSQFIE 133 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 R LEGE++RTI S+ + +ARVH+ +P F + +PTASV + Sbjct: 134 TARYRRGLEGELSRTITSLQSVKSARVHLAIPKESVFVRDTRKPTASVFLELYPGRRLDR 193 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEM 243 +AI +LVA+++ L DVTV+D G LLT + + GK + ++ + Sbjct: 194 SQVDAIVNLVASSISQLSDKDVTVVDQRGTLLTDKDSSSELSIAGKQFDYTRRVEEVMLR 253 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 +N L +G F++ V A+++ + + Y+PD RS + K+ +RS Sbjct: 254 RVNNILMPVVGSGRFKAEVSADIDFTAVEQTDEQYNPDLLALRSEQTLKE-RRSSAGGNN 312 Query: 304 SAVTVEQNMPHVSDRKVPLPR------------SLENTDKKEEQSNYEINTKSIATTHDN 351 N P + S K+E N+E++ T Sbjct: 313 GVPGALTNQPPGAINAPEQAAVNGAPIGGGSGSSGTGQSKEETTRNFELDRSISYTKRQQ 372 Query: 352 YKLERL-SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 + RL VV + L D L+ + +V A G + RGD++++ + Sbjct: 373 GTVRRLSVAVVVDDVASLNTETSEIERAPWSDEELSRLTLLVRDAVGYDPSRGDSVSVIN 432 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 F + + V + + ALV L +L+ + L+ L + Sbjct: 433 SPFALPEPPVAPEVIPFYKQTW--FLNLLQPALVGLFILILLLVVVRPILKTLSEQNKIA 490 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 E +I A T + +D ++L S+ + S R Sbjct: 491 VAEDTEAAIF-------ADETDEISDDQVSLVSAEDVMVPGSPEKIDR--------QLNA 535 Query: 531 LLHMIEINEERFAKILRKWARS 552 + +I ER A+++++W Sbjct: 536 IRGLIAEEPERVAQVVKQWVME 557 >gi|88858108|ref|ZP_01132750.1| flagellar M-ring protein [Pseudoalteromonas tunicata D2] gi|88819725|gb|EAR29538.1| flagellar M-ring protein [Pseudoalteromonas tunicata D2] Length = 574 Score = 350 bits (897), Expect = 5e-94, Method: Composition-based stats. Identities = 100/552 (18%), Positives = 227/552 (41%), Gaps = 29/552 (5%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 G + R LI+A I V I +F+ + P L + ++ + L + Sbjct: 40 GGVDVLRQVTLIIALTICVAIAVFII--IWARQPDMRPLGT-MPTDELIQTLDFLDAQKV 96 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 D+++ G++I VP + ++ +A +GL + NSG ++ + FG++ ++ Sbjct: 97 DYKLE--GNTIYVPETGYQNIKLMMAREGLDQA-PNSGTDILMQDMGFGVSQRLERERLK 153 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEA 190 + E ++ARTI+ + +V A+V + +P F + P+A+V++ + + ++ Sbjct: 154 HSREQQLARTIEELQNVVRAKVLLALPKENVFARQEKSPSATVVLTLKRGRILNGEEVDS 213 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHEIEMNINKA 248 I ++A+AV L+ VTV D G+LL + + K + + + E I+ Sbjct: 214 IVDIIASAVQGLEPARVTVTDQNGRLLNSGSQDSLAARSRKEYEVERKREQEYIEKIDSI 273 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308 + +G+ N+ + V ++ + + + Y+PD RS ++ Sbjct: 274 MIPVVGLGNYTAQVDLVMDFSSVEETQKRYNPDLPAVRSEMTREENNIG--GLAVGIPGA 331 Query: 309 EQNMPHVSD------RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 N P V+ + S + ++KE NYE++T + R+S++V Sbjct: 332 LSNQPPVNSAIPEKAGQGSASNSAPSRNQKEATRNYELDTTISHKRQQTGVIRRISVSVA 391 Query: 363 VNKGRLTEVLG-RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 +N G ++ + + L+ I +++ G + +RGD + + ++ F++ + + Sbjct: 392 INYNSTAGADGAQATREPRSQQELSNIRRLLQGGIGFDMQRGDALEVVTVPFVQPYIEDV 451 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 + + + V+ ALV +V + V L++L DD + ++ S Sbjct: 452 AELPMWEQPWFFKIARLVMGALVIIVLIIAVV---RPMLKKLIYPDDTLES-YDDDAMSS 507 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 I + L + + + D +L + + + ++ E Sbjct: 508 GVDIGDSTLDMLNQTFDESAVGFSADGTLQLPDLHGDEDLLKA------VRALVANEPEL 561 Query: 542 FAKILRKWARSE 553 +++++ W + Sbjct: 562 SSQVVKAWLTED 573 >gi|157373218|ref|YP_001471818.1| flagellar MS-ring protein [Shewanella sediminis HAW-EB3] gi|157315592|gb|ABV34690.1| flagellar M-ring protein FliF [Shewanella sediminis HAW-EB3] Length = 570 Score = 350 bits (897), Expect = 5e-94, Method: Composition-based stats. Identities = 124/571 (21%), Positives = 237/571 (41%), Gaps = 37/571 (6%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 I+ L ++ R +++ +++ + + + S Y LY + E + ++ Sbjct: 21 IVSSLKTKWQQFNRGDRQVLVL--AILASVVACVIVLLLWTASQGYRPLYGQQEKVETSQ 78 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L I++R+ N + V +GKAR+ LAA+G+ + SG E D + G Sbjct: 79 IIEVLEAEGINYRLEANSGLVLVQEDKLGKARMLLAARGV-KAKVPSGMESLD-NSGIGT 136 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAIN 181 + FM++ +LEGE++RTI ++ + ARVH+ +P F + P+ASVM+ Sbjct: 137 SQFMEQAKYRHSLEGELSRTIMALKAVRTARVHLAIPKRTLFIRQQPELPSASVMLDLYA 196 Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQ 235 S + EAI +LVA +V + V ++D G L++ N+ + L Q Sbjct: 197 GSKIQPGQIEAIANLVAGSVTGMTPERVQIVDQEGNHLSSGIAINQDITQARDRQLKYTQ 256 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 ++ + + LA LG +NF+ + A++N + + DP S V + + D Sbjct: 257 ELEQSLINRASSMLAPVLGKENFQVQIAAQVNFNQVEETRESLDPQSVVTQEKQSINDTN 316 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 A+T N + + N + ++E YE+ T +LE Sbjct: 317 SDIAMGIPGALT---NQAPKAQANKTEENTRRNLN-QQESRQYEVGRSVRHTRFQQMQLE 372 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 LS++V++N + + G ++ ++++ +V + G + +RGD +I S DF Sbjct: 373 NLSVSVLLNNQA-------AGENGWNEAQVSQLGTMVKDSIGYSMQRGDQFSINSFDFAP 425 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 Q+ + + + I ++G L+ F+ + L + E Sbjct: 426 VQIAQFEPMPWWQTEGYQAYLRYFIGG---ILGFGLIFFVLRPLVSHLTRTAEHSLKEEL 482 Query: 476 GKSILSPPPISSAVTTGLMPNDNIAL---------DSSNQDIFSHSRNLQSRINSYVSKQ 526 + + SS+ +G+ D AL D S+ D S+ + L + + K Sbjct: 483 PQVEPALEAPSSSSISGVQSGDGQALADQLMGLEQDKSDTDWLSN-QGLPAPGSPLTVKM 541 Query: 527 SDLRLLHMIEINEERFAKILRKWARSEIEDR 557 L L + R A+++ W +R Sbjct: 542 EHLSL--LANQEPARVAEVIAHWIGDNENER 570 >gi|323493122|ref|ZP_08098253.1| flagellar MS-ring protein [Vibrio brasiliensis LMG 20546] gi|323312593|gb|EGA65726.1| flagellar MS-ring protein [Vibrio brasiliensis LMG 20546] Length = 582 Score = 350 bits (897), Expect = 5e-94, Method: Composition-based stats. Identities = 113/566 (19%), Positives = 234/566 (41%), Gaps = 37/566 (6%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 ++ Q + + R L+L++V+ + + + ++ + LY + E D I Sbjct: 33 KVKQLWSNS-----QRNLVLSAVLAAIVAAIIVVALWSSTQSFRPLYSQQERFDTGEIVS 87 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L I++R+ + + V V + R+ LAA+G+ + +G + + +S G + F Sbjct: 88 VLESEGINYRLQEKNGQVLVAEGEVARIRMLLAAKGV-KAKLPTGLDSLQEDSSLGTSQF 146 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAINPSV 184 M+ LEGE+ RTI S++ + ARVH+ +P F + + P+ASVM+ Sbjct: 147 METARYRHGLEGELVRTIISLNAVSNARVHLAIPRQTLFVRQNSEAPSASVMLELKPGEE 206 Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIVQAIQH 239 K EAI +L+ +V + V+V+D G+LL+A+ K L ++++ Sbjct: 207 LKPPQVEAIINLLVGSVTGMKPEQVSVIDQYGRLLSADVASAEAGKVNAKYLDYQKSVEK 266 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 +I L +G NFR V A++N + + + D ++ + R+ + + Sbjct: 267 QIIQRAADMLTPIVGPSNFRVQVAADMNFSQVEETQEILD-NTPIVRNEHTITNNSIDQI 325 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + N P V+ +VP S + E Y + + T + ++E+LS+ Sbjct: 326 AL--GVPGTLSNQPPVT-GEVPTQDSQNTNARSEINRQYAVGSSVRRTQYQQGQIEKLSV 382 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 +V++N+ + ++I+ +++ A GI +RGD+ +I S +F + Sbjct: 383 SVLLNEAAAPNGT------AWTEDEKSQISTMITDAVGIADQRGDSFSIMSFNFTPLAIE 436 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 ++ + + VI ++ + + F L L D + E+ + Sbjct: 437 APPSIPWWQDPTVQQPMRYVIGGML----GMAMIFFVLRPLIMHLTGADTRSQEL-EFAD 491 Query: 480 LSPPPISSAVTTGLMPNDNIALD--------SSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 P+ + T L+ +++ + + L + + L+L Sbjct: 492 PQDEPVYDNLQTREEREREEDLNRKLSEKGIAASSGLNVGNDMLPPPGSPLEIQLKHLQL 551 Query: 532 LHMIEINEERFAKILRKWARSEIEDR 557 + ER A++L++W R Sbjct: 552 --IANEEPERVAEVLKQWVNVNEHSR 575 >gi|126463732|ref|YP_001044846.1| flagellar MS-ring protein [Rhodobacter sphaeroides ATCC 17029] gi|126105396|gb|ABN78074.1| flagellar M-ring protein FliF [Rhodobacter sphaeroides ATCC 17029] Length = 542 Score = 350 bits (897), Expect = 5e-94, Method: Composition-based stats. Identities = 132/550 (24%), Positives = 233/550 (42%), Gaps = 25/550 (4%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + L R ++ S + + + F P LY L+ + A Sbjct: 15 VQNLISIWNDLDGRRRAVVVSATVAMFLAVLGLSQFAGRPPMALLYAGLQGPAAGEVVTA 74 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L + + G S+ V ++ + R+ LA +GLP++ + +GYEL D ++ FG TS M Sbjct: 75 LEAQGAAYEVR--GDSVYVEAARRDEIRMKLAGEGLPATGA-AGYELLDGLSGFGTTSQM 131 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS-VY 185 + +RA EGE+ARTI + + AARVHI P FR+ RPTASV + + Sbjct: 132 FDAAYLRAKEGELARTILASPKVKAARVHIAQPAAQPFRRE-QRPTASVTVTTSGGAVTA 190 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNI 245 A A +HLVA+AV L DV+V+DS L+ + + + + S E+ N+ Sbjct: 191 DQARAFKHLVASAVAGLQPEDVSVIDSVMGLIRSGDEKDSATAAGESRA----AELRSNV 246 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305 + L A +G V ++ + I E +DP +V S + + S +++P Sbjct: 247 ERLLEARVGPGRAVVEVSVDVETARESIVEKSFDPKGRVPISSETQEKS--SNSTEPSPD 304 Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365 VTV N+P + +S +T + E N+E++ + RL++AV+V+ Sbjct: 305 VTVASNLPEGDAKGGTGGKS--STSETRETVNFEVSQTQRELMRQPGAIRRLTVAVLVDG 362 Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425 + G + + + LA + ++VS+A G++ RGD +T+ S+ F E + Sbjct: 363 IKTVADDGTVGWEPRPEEELAVLRELVSSAVGLDESRGDRLTLRSLAF-ETPPEAGTLAE 421 Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485 F+ L +++ + V L+ LGL +R + ++ Sbjct: 422 TGFLSRLGAF--DLMSLIQIGVLALVALILGLFVVRPVLTAPPRPPAAPQPLALPGYEGG 479 Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545 A+T + + D+ + ++ RL +IE + +I Sbjct: 480 EPALTGEI---------DDSGDLPDFPMVSSAPLDLDEEADPVARLRRLIEERQAESVEI 530 Query: 546 LRKWARSEIE 555 LR W + E Sbjct: 531 LRGWMEPQRE 540 >gi|167644977|ref|YP_001682640.1| flagellar MS-ring protein [Caulobacter sp. K31] gi|167347407|gb|ABZ70142.1| flagellar M-ring protein FliF [Caulobacter sp. K31] Length = 547 Score = 350 bits (897), Expect = 5e-94, Method: Composition-based stats. Identities = 131/547 (23%), Positives = 227/547 (41%), Gaps = 7/547 (1%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 +F + G R+ L V I + A ++ + L ++ + + AL Sbjct: 3 KFLSAIQRFGVGRLAALIGVAAGAIAVIAAVMMMMSKQPNELLLSNVDPKESAAATQALD 62 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 A I + +GS+I V V AR + +GL +S S GYE+FD ++ G T F+Q+ Sbjct: 63 TAGIKYETKSDGSTIYVARDKVNAARQLIFTKGLVTSGS-VGYEIFDTGSALGQTDFVQQ 121 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA 188 + R RAL+GE+ RTIQ G+ AARVH+VMP F + +PTA+V + Sbjct: 122 LNRQRALQGELERTIQGWDGVRAARVHLVMPKRQLFEEDAEQPTAAVTVSMAREPSPDMV 181 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKA 248 A+++LVA +V + V V+D GK L+A E + A + I + Sbjct: 182 RAVQNLVAGSVAGMKPDRVNVIDQHGKTLSAGNDESLAGKMAQDAKSATEARIAKTVKDM 241 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308 + LG R V A+L+++ +E +DPD +V RS + + VT Sbjct: 242 IDGVLGPGKARVNVTADLDLNRVTTQERKFDPDGQVIRSESTNAANNSETKNDDTGGVTS 301 Query: 309 EQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368 QN+P + S +D E +NYEI+ + T + + ++++AV ++ Sbjct: 302 TQNIPGQTPNGFQPLGS--KSDSNESVTNYEISESTKTTVQEPGAVRKVAVAVAIDGVAA 359 Query: 369 TEVLG--RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 A + +A+I ++V A G + RGD +++ ++ F + + G + Sbjct: 360 PPGKDGKPGAYTPRSAEEIAQIEQLVKTAVGFDQTRGDQVSVVNVRFPQPEDQGLGKAGL 419 Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNIDDAKKGEVGGKSILSPPPI 485 I V V LL+ + L+ L + G + + Sbjct: 420 -LAGFDKNDIMRFIELGVLAVVALLILLFAVRPFLKSLMTPPTPLGLALNGPQVTRMVTL 478 Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545 S T ++ + + A + R ++I V S R+ +E + + I Sbjct: 479 SDGSTQEVIVDQSGASMALAAPSDMDQRIDIAKIEGQVKASSVKRVAEFVEKHPDESVAI 538 Query: 546 LRKWARS 552 LR W Sbjct: 539 LRTWLHE 545 >gi|120598250|ref|YP_962824.1| flagellar MS-ring protein [Shewanella sp. W3-18-1] gi|146293672|ref|YP_001184096.1| flagellar MS-ring protein [Shewanella putrefaciens CN-32] gi|120558343|gb|ABM24270.1| flagellar M-ring protein FliF [Shewanella sp. W3-18-1] gi|145565362|gb|ABP76297.1| flagellar M-ring protein FliF [Shewanella putrefaciens CN-32] Length = 560 Score = 349 bits (896), Expect = 6e-94, Method: Composition-based stats. Identities = 106/553 (19%), Positives = 220/553 (39%), Gaps = 32/553 (5%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 S + R + + + + + L + + P Y L K+E ++ ++ L + I Sbjct: 25 SLGGVDMMRQITMILALAICLALAVFVMLWAQEPEYRPL-GKMETQEMVQVLDVLDKNKI 83 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 ++I + I VP + ++ L+ G+ + + + + FG++ M++ Sbjct: 84 KYQIEVD--VIKVPEDKYQEVKLMLSRAGI--DGGTTSKDFLTQDSGFGVSQRMEQARLK 139 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV-YKSAEAI 191 + E +AR I+ + + A+V + +P F + ++P+A+V+I + +AI Sbjct: 140 HSQEENLARAIEQLQSVSRAKVILALPKENVFARNTSQPSATVVINTRRGGLGQGEVDAI 199 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNINKAL 249 +VA+AV L+ VTV DS G+LL + + + L +VQ + E I L Sbjct: 200 VDIVASAVQGLEPSRVTVTDSNGRLLNSGSQDGVSARARRELELVQQKEAEYRTKIESIL 259 Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309 LG DNF S V ++ + ++PD RS ++ S Sbjct: 260 VPILGPDNFTSQVDVSMDFTAVEQTAKRFNPDLPALRSEMTVENN--STGGTTGGIPGAL 317 Query: 310 QNMPHVS-----DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 N P + D + + +E N+E++T T + R+S++V V+ Sbjct: 318 SNQPPMESDIPEDATNASEKVVAGNSHREATRNFELDTTISHTRQQIGVVRRISVSVAVD 377 Query: 365 -KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 K + G+ A + + L I +++ A G +++RGD + + ++ F++ + + + Sbjct: 378 FKPGAADENGQVARVARTEQELTNIRRLLEGAVGFSTQRGDVLEVVTVPFMDQLMEDIPS 437 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG--GKSILS 481 ++ R + ALV LV L V L+RL D + G + Sbjct: 438 PELWEQPWFWRAVKLGVGALVILVLILAV---VRPMLKRLIYPDSVNMPDDSRLGNELAE 494 Query: 482 PPPISSAVTTGLM--PNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 +A T G++ + + + I + + ++ Sbjct: 495 IEDQYAADTLGMLNTKEAEYSYADDGSILIPNLHKDDDMIKA---------IRALVANEP 545 Query: 540 ERFAKILRKWARS 552 E ++++ W + Sbjct: 546 ELSTQVVKNWLQD 558 >gi|145298346|ref|YP_001141187.1| flagellar MS-ring protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142851118|gb|ABO89439.1| flagellar M-ring protein FliF [Aeromonas salmonicida subsp. salmonicida A449] Length = 569 Score = 349 bits (896), Expect = 6e-94, Method: Composition-based stats. Identities = 105/552 (19%), Positives = 216/552 (39%), Gaps = 26/552 (4%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 F S T + R LIL I + I +F+ + P L ++ + L Sbjct: 31 FLSNTDVLRQITLILGLAICLAIAVFIL--LWGKEPDMRPLGT-YSTQELVKTLDYLDAQ 87 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS--SNSGYELFDKVNSFGLTSFMQE 128 I + + +G S+ V + R+ L GL +++ SN G + K +SFG++ M+ Sbjct: 88 KIPYEV--DGKSVLVSAEKYADIRLRLTRAGLATNTDASNDGESILLKDSSFGVSQRMET 145 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV-YKS 187 + E ++A I+ + A+V + +P F + +P+A+V++ ++ Sbjct: 146 ERLKLSRERQLASAIEQFQNVAKAQVLLAIPKDNVFARNERKPSATVVLSLKGNALGQGE 205 Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNI 245 ++I +VA+AV L+ VTV D G+LL + + K ++ Q + E + I Sbjct: 206 VDSIVDMVASAVHGLEPTRVTVTDQNGRLLNSGSQDPVSAQTRKEFAMQQKQEVEYKQKI 265 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP--- 302 + L LG DN+ + V L+ Q+ Y+PD RS ++ S ++ Sbjct: 266 DAILIPVLGADNYTAEVDLSLDFSQQEQTRKTYNPDLPAVRSEMTLEENSASGSNGGVPG 325 Query: 303 --ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 + N+P + S +KE N+E++T + R++++ Sbjct: 326 ALTNQPPAASNIPEEAAGGDGGAASSSGRSRKEATRNFELDTTVSHIRRQMGGIRRMTVS 385 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 V V+ + G + + + L + +++S G + RGDT+ + ++ F +L N Sbjct: 386 VAVDYKSIAGADGAVTREARSQAELDTLRRLLSGGLGFDVTRGDTLEVVAIPFNRPELEN 445 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 + R V A LV +L+ + L+RL D +G++ + + Sbjct: 446 VADAPIYEQPWFWR---AVRIAASVLVIIVLIVTVVRPMLKRLLYPDARPEGDLDLDNSI 502 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 + + + + + ++ + Sbjct: 503 VLGGDDELSLLAAQAESEPVFGVRDGHLKLPDLHRDEDL--------LKAVRALVANEPD 554 Query: 541 RFAKILRKWARS 552 A+++++W + Sbjct: 555 LAAQVIKEWVSN 566 >gi|322379554|ref|ZP_08053893.1| flagellar MS-ring protein [Helicobacter suis HS1] gi|322379773|ref|ZP_08054077.1| flagellar MS-ring protein [Helicobacter suis HS5] gi|321147801|gb|EFX42397.1| flagellar MS-ring protein [Helicobacter suis HS5] gi|321148014|gb|EFX42575.1| flagellar MS-ring protein [Helicobacter suis HS1] Length = 567 Score = 349 bits (896), Expect = 6e-94, Method: Composition-based stats. Identities = 123/574 (21%), Positives = 238/574 (41%), Gaps = 38/574 (6%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-----YDNLYVKLE 56 ++L Q++ FF + L R + + + + + + + + + Y L+ ++ Sbjct: 5 SLLQQVISFF---SKLNRAQKITIVTAVTLIVAFLVFLLIYPTHDKGDLSGYGVLFEGMD 61 Query: 57 VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 SD I L + +I ++I +I +P + + RI LA+QG+P +S GYE+FD Sbjct: 62 NSDNALILQHLQQKHIPYKIPKE-DTILIPRDRIYEERISLASQGIPKTSK-VGYEIFD- 118 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 + FG T F Q I +RA+EGE++RTI+S++ I A VHI +P F PTASVM Sbjct: 119 IKDFGATDFDQNIKYIRAIEGELSRTIESLNPIEKANVHIAIPKDSVFVSHEIPPTASVM 178 Query: 177 IRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKSL 231 ++ + I++L+AA+VP L + +V +++ G+ L N+ R + L Sbjct: 179 LKIKPNMRLLPRQIIGIKNLIAASVPKLTVENVKLVNENGEPLGENDQLDTTRELAQAQL 238 Query: 232 SIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290 Q ++ +E I LA + G D + V AE + ++ + +DP++ V RS + Sbjct: 239 RYKQNFENMLESKIANILAPIVGGRDKVVARVNAEFDFSQKKSTKETFDPNN-VVRSEQT 297 Query: 291 SKDAQRS-ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 ++ + Q V N+ V + + + E +K +NYE+ Sbjct: 298 MEEKKEGLPKKQVGGVPGVVSNIGPV--QGIANDQLKEKYEKSTNTTNYEVGKMVSEIKG 355 Query: 350 DNYKLERLSIAVVVNKGRL---TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 + L RL+ AVVV+ + + +IN +V A G N RGD + Sbjct: 356 EFGVLTRLNAAVVVDGKYQKVNKNGTESMEYVALSAAEMDQINALVKQAIGYNQNRGDAV 415 Query: 407 TITSMDF-LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL----R 461 T+++ +F ++ + + + + + +++ L++ + + Sbjct: 416 TVSNFEFNAKSTKYVPMSAYERVVATTEKVLGPFSSLFKYIIVGLVLYVFYKKIITPFSQ 475 Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521 R+ I ++ +V G M + + Sbjct: 476 RMLEIQPDEEEQVQSLFATEEEDDEEVDKFGEMRKKVEDQLGLSASFDEEDVKYDIMLE- 534 Query: 522 YVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 R+ H ++ E A + + + E+ Sbjct: 535 --------RVRHSLKEKPEEIASMFKLLIKDEVA 560 >gi|312884912|ref|ZP_07744602.1| flagellar MS-ring protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309367389|gb|EFP94951.1| flagellar MS-ring protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 583 Score = 349 bits (896), Expect = 7e-94, Method: Composition-based stats. Identities = 117/559 (20%), Positives = 232/559 (41%), Gaps = 35/559 (6%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F L R +L+L+ I V +++ + F+V P L V + ++ I L Sbjct: 45 LDFGAGDLDLLRQVVLVLSISICVALIVMLF--FWVREPEMRPLGV-YDTEELIPILDYL 101 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + +D+ + G++I VP S ++ + GL + +G ++ + FG++ ++ Sbjct: 102 DQQKLDYELE--GNTILVPVSDFNSLKLDMVRAGL-NQEREAGDDILMQDMGFGVSQRLE 158 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187 + + E ++++ I+ + + ARV + +P F + +ASV + + K Sbjct: 159 QERLKLSRERQLSKAIEELKQVRKARVLLALPKQSVFVRHNQEASASVFLTLKTGANLKQ 218 Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEM 243 +++ +VA+AVP + VTV D G+LL++ + + K + + + + Sbjct: 219 EEVDSVVDMVASAVPGMKPNRVTVTDQHGRLLSSGSEDPASSARRKEHELERKQEQALRE 278 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE----- 298 I+ L LG N+ + V EL+ + V+DPD RS +D Sbjct: 279 KIDSVLIPILGFGNYTAQVDIELDFSAVEQTRKVFDPDKPATRSEYTLEDYNNGNMVAGI 338 Query: 299 ----TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 ++QP + ++ Q++ + D S+ KE N+EI+T + Sbjct: 339 PGALSNQPPADASIPQDVAQMKDGTALGQGSV----HKEATRNFEIDTTISHERRQTGVV 394 Query: 355 ERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 R ++AV V N+ + G + Q ++ L I +I+ G + RGD + + SM F Sbjct: 395 NRQTVAVAVKNRSVVNPDTGETTYQPISEAELNSIKQILIGTVGFSESRGDLLNVLSMQF 454 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 E + V + + +ALV +V L++ A+++L N A + Sbjct: 455 AEPESDVVTDVPIWEHPNFNDWVRWFASALVIIVVILVLV---RPAMKKLINP--ASDED 509 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 PI + T L+ + LD F S +L N + + + Sbjct: 510 DDQMYGPDGMPIGADGETSLIGGE---LDGGELFEFGSSIDLP---NLHKDEDVLKAIRA 563 Query: 534 MIEINEERFAKILRKWARS 552 ++ E A++++ W + Sbjct: 564 LVSNEPELAAQVVKNWMQD 582 >gi|221640811|ref|YP_002527073.1| flagellar MS-ring protein [Rhodobacter sphaeroides KD131] gi|221161592|gb|ACM02572.1| Flagellar M-ring protein FliF [Rhodobacter sphaeroides KD131] Length = 542 Score = 349 bits (895), Expect = 8e-94, Method: Composition-based stats. Identities = 131/553 (23%), Positives = 238/553 (43%), Gaps = 28/553 (5%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + L+ + GR R +++ + + + + + ++ P LY L+ + Sbjct: 15 VQNLISIWNDLD--GRRRAVVVGATVAMFLAVLGLSQL-AGRPPMALLYAGLQGPAAGEV 71 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 AL + + G S+ V ++ + R+ LA +GLP++ + +GYEL D ++ FG T Sbjct: 72 VTALEAQGAAYEVR--GDSVYVEAARRDEIRMKLAGEGLPATGA-AGYELLDGLSGFGTT 128 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 S M + +RA EGE+ARTI + + AARVHI P FR+ RPTASV + + Sbjct: 129 SQMFDAAYLRAKEGELARTILASPQVKAARVHIAQPAAQPFRRE-QRPTASVTVTTSGGA 187 Query: 184 -VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242 A A +HLVA+AV L DV+V+DS L+ + + + + S E+ Sbjct: 188 VTADQARAFKHLVASAVAGLQPEDVSVIDSVMGLIRSGDEKDSATAAGESRA----AELR 243 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 N+ + L A +G V ++ + I E +DP +V S + + S +++P Sbjct: 244 SNVERLLEARVGPGRAVVEVSVDVETARESIVEKSFDPKGRVPISSETQEKS--SNSTEP 301 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 VTV N+P + +S T + E N+E++ + RL++AV+ Sbjct: 302 SPDVTVASNLPEGDAKGGTGGKST--TSETRETVNFEVSQTQRELMRQPGAIRRLTVAVL 359 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 V+ + G + + + LA + ++V +A G++ RGD +T+ S+ F E Sbjct: 360 VDGIKTVADDGTVGWEPRPEEELAVLRELVGSAVGLDESRGDRLTLRSLAF-ETPPEAGT 418 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482 + F+ L +++ + V L+ LGL +R + ++ Sbjct: 419 LAETGFLSRLGAF--DLMSLIQIGVLALVALILGLFVVRPVLTAPPRPPAAPQPLALPGY 476 Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542 A+T + + D+ + ++ RL +IE + Sbjct: 477 EGGEPALTGEI---------DDSGDLPDFPMVSSAPLDLDEEADPVARLRRLIEERQAES 527 Query: 543 AKILRKWARSEIE 555 +ILR W + E Sbjct: 528 VEILRGWMEPQRE 540 >gi|296534177|ref|ZP_06896667.1| flagellar M-ring protein FliF [Roseomonas cervicalis ATCC 49957] gi|296265497|gb|EFH11632.1| flagellar M-ring protein FliF [Roseomonas cervicalis ATCC 49957] Length = 525 Score = 348 bits (894), Expect = 1e-93, Method: Composition-based stats. Identities = 121/419 (28%), Positives = 196/419 (46%), Gaps = 10/419 (2%) Query: 12 KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71 +S +LG R+ LA L+ + L + LY L+ D +I AL A Sbjct: 38 ESLRALGTARLAALAFTGLLTLGLIGFLTLRTATTPMGLLYGDLDQRDAAQIVAALERAR 97 Query: 72 IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131 + +R+ NG+ + P + + R+ LA GLP+ S GYE+FD+ + T F Q+I R Sbjct: 98 VPYRLGRNGTEVLAPEEDIPRLRLSLARDGLPAGGS-VGYEIFDRQSGLTTTPFQQDINR 156 Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYKSAE 189 +RALEGEIAR+I+ + G+ +ARVH+V+P F + ASV+++ + + Sbjct: 157 LRALEGEIARSIRGLDGVASARVHLVLPRREPFSRERGESQASVVLQMRGIHRLDREGVQ 216 Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIEMNINK 247 A+ HLVAAAVP L ++ V+D G+LL+ + I + + + + + Sbjct: 217 AVLHLVAAAVPGLKPQNIAVVDGRGELLSRGGQAGANGLAQSQEEIRRGQEMRMARAVEE 276 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVT 307 L LG R+ E++ D Q E +DP+++V RS ++ R+ Q S Sbjct: 277 MLERILGPGRVRAEATIEMDHDRVQTTEERFDPENQVPRSQSSVNESSRNGEQQNVSVAN 336 Query: 308 VEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367 P P + ++EE NYEI + T D + RLS+AV+V+ Sbjct: 337 QLPGAPPAQQNSGPQSQEA----RQEETVNYEIGRTTRNTLRDQPVVRRLSVAVLVDGVW 392 Query: 368 LTEVLGRSAD-QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425 G +A + + + I+ +V A G N RGD + + S+ F E + G Q Sbjct: 393 EPGEAGGAARFRERTPQEMERISALVRGAIGFNETRGDRLEVVSLRFAEPVWGSDGESQ 451 >gi|301168113|emb|CBW27699.1| flagellar basal-body M-ring protein [Bacteriovorax marinus SJ] Length = 554 Score = 348 bits (893), Expect = 1e-93, Method: Composition-based stats. Identities = 121/563 (21%), Positives = 248/563 (44%), Gaps = 30/563 (5%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + F + SL + + L S+ + F+ + + D LY +L D +I+V Sbjct: 9 IRNFTEFFNSLDLNKKIGLVSIAAFIVACFVGIVIWASKTRMDVLYTELNREDSKKIAVL 68 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L E I + +S++G +IS+P ++ K R+ +A G+ + S GYE+FDK SFG TSF+ Sbjct: 69 LEEKKIPYEMSNDGKTISIPEELINKWRLEIATLGV-NFSGTVGYEVFDK-QSFGTTSFV 126 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SV 184 Q++ + RALEGE+ +TI+ I G+ ARVH+ +P+ F P+ASV++ Sbjct: 127 QKVNKQRALEGELVKTIKYIRGVKRARVHLSIPESSPFVSEKKAPSASVVVDLERGVTLT 186 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIE 242 + + LV++++ + +V +LD GK L+ N + +++ + + E Sbjct: 187 PDEIKGVASLVSSSIDGMRNENVVILDDRGKKLSENIGDPMTAYTANRMALEGKVNRKYE 246 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 I L+ +G + V L+ + +D ++K S + P Sbjct: 247 KQIEDILSKVVGAGKVIAKVTVNLDFTESVSTKTEFDGENKAVLSEVSNTQKLNGSRPSP 306 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 + N+P + +P + N DK NY + +K + + + ++S AV+ Sbjct: 307 QGIPGARSNLPGEQP-QPGIPETRNNVDKSLATRNYNVPSKVTKSKNPTAGIRKISAAVM 365 Query: 363 VNKGRL----TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 ++ R+ + + + ++ LA + IVS+ GI++RRGD I I +M+F + + Sbjct: 366 IDGRRVQVKGADGAISTQYERWSEADLANFSAIVSSTLGIDARRGDQIVIKNMEFAQEDM 425 Query: 419 FNSGTVQVSFMDILSRH-FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 +++ + +R ++ L + L FL + + + + E Sbjct: 426 ---ASIEAMMREKENRELIKNIVKYLTVGLAITLFFFLVVRPFIQWVTDNTVETVE---- 478 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR--LLHMI 535 P + + N + + ++ ++N + + LR ++ ++ Sbjct: 479 ---DFLPKTLEELEKVQANQKLP------GLEDALPQIEEKLNPEKIEGNMLREKIISLV 529 Query: 536 EINEERFAKILRKWARSEIEDRY 558 E N + A+++ + ++ D+ Sbjct: 530 EGNPAKAAQVIHEIIHAQESDKQ 552 >gi|260767706|ref|ZP_05876641.1| flagellar M-ring protein FliF [Vibrio furnissii CIP 102972] gi|260617215|gb|EEX42399.1| flagellar M-ring protein FliF [Vibrio furnissii CIP 102972] gi|315179462|gb|ADT86376.1| flagellar M-ring protein FliF [Vibrio furnissii NCTC 11218] Length = 580 Score = 348 bits (892), Expect = 2e-93, Method: Composition-based stats. Identities = 117/559 (20%), Positives = 237/559 (42%), Gaps = 36/559 (6%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F L R +L+L+ I V +++ + F+V P L E ++ + L Sbjct: 43 LDFAMGDLDLLRQIVLVLSISICVALIVMLF--FWVKEPEMRPLGA-YETEELIPVLDYL 99 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + +++ +G++I VP+S ++++ GL + S +G ++ + FG++ ++ Sbjct: 100 DQQKQTYKL--DGNTILVPNSDYNSIKLNMVRAGL-NQSRQAGDDILLQDMGFGVSQRLE 156 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187 + + E ++ + I+ + + ARV + +P F + +ASV + S K Sbjct: 157 QERLKLSRERQLGKAIEEMRQVNKARVLLALPKQSVFVRHNQEASASVFLTLRTGSNLKQ 216 Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEM 243 ++I +VA+AVP + VTV D G+LL++ + K + + + + Sbjct: 217 EEVDSIVDMVASAVPGMTPTRVTVTDQHGRLLSSGSQDPVSAARRKEQELERKQEQNLRD 276 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE----- 298 I+ L LG+ N+ + V EL+ + +DP++ RS +D Sbjct: 277 KIDSVLIPILGLGNYTAQVDIELDFSAIEQTRKRFDPNTPATRSEYTLEDYNNGNVVAGV 336 Query: 299 ----TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 ++QP + ++ Q++ + D V S+ KE N+E++T + Sbjct: 337 PGALSNQPPADASIPQDVAQMKDGSVMGQGSV----HKEATRNFELDTTISHERKQTGVI 392 Query: 355 ERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 R ++AV V N+ + G +S L I +++ G N RGD + + SM F Sbjct: 393 NRQTVAVAVKNRSSVNADTGEVTYTPLSESELNSIRQVLIGTVGYNENRGDLLNVLSMQF 452 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 E ++ V + S + +ALV +V L++ AL++L N + Sbjct: 453 AEPEMDQLADVPIWDNPNFSDWIRWLASALVIIVVVLVLV---RPALKKLLNPAAEDDEQ 509 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 + G L PI + T L+ +D ++ F +L N + + + Sbjct: 510 LYGPDGL---PIGADGETSLIGSD---IEGGELFEFGSGIDLP---NLHKDEDVLKAVRA 560 Query: 534 MIEINEERFAKILRKWARS 552 ++ E A++++ W ++ Sbjct: 561 LVANEPELAAQVVKNWMQN 579 >gi|319427071|gb|ADV55145.1| flagellar M-ring protein FliF [Shewanella putrefaciens 200] Length = 560 Score = 348 bits (892), Expect = 2e-93, Method: Composition-based stats. Identities = 106/553 (19%), Positives = 219/553 (39%), Gaps = 32/553 (5%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 S + R + + + + + L + + P Y L K+E ++ ++ L + I Sbjct: 25 SLGGVDMMRQITMILALAICLALAVFVMLWAQEPEYRPL-GKMETQEMVQVLDVLDKNRI 83 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 ++I + I VP + ++ L+ G+ + + + + FG++ M++ Sbjct: 84 KYQIEVD--VIKVPEDKYQEVKLMLSRAGI--DGGTTSKDFLTQDSGFGVSQRMEQARLK 139 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV-YKSAEAI 191 + E +AR I+ + + A+V + +P F + ++P+A+V+I + +AI Sbjct: 140 HSQEENLARAIEQLQSVSRAKVILALPKENVFARNTSQPSATVVINTRRGGLGQGEVDAI 199 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNINKAL 249 +VA+AV L+ VTV DS G+LL + + + L +VQ + E I L Sbjct: 200 VDIVASAVQGLEPSRVTVTDSNGRLLNSGSQDGVSARARRELELVQQKEAEYRTKIESIL 259 Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309 LG DNF S V ++ + ++PD RS ++ S Sbjct: 260 VPILGPDNFTSQVDVSMDFTAVEQTAKRFNPDLPALRSEMTVENN--STGGTTGGIPGAL 317 Query: 310 QNMPHVS-----DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 N P + D + + +E N+E++T T + R+S++V V+ Sbjct: 318 SNQPPMESDIPEDATNASEKVVAGNSHREATRNFELDTTISHTRQQIGVVRRISVSVAVD 377 Query: 365 -KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 K + G+ A + + L I +++ A G +++RGD + + ++ F++ + + Sbjct: 378 FKPGAADENGQVARVARTEQELTNIRRLLEGAVGFSTQRGDVLEVVTVPFMDQLMEDIPA 437 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG--GKSILS 481 ++ R + ALV LV L V L+RL D + G + Sbjct: 438 PELWEQPWFWRAVKLGVGALVILVLILAV---VRPMLKRLIYPDSVNMPDDSRLGNELAE 494 Query: 482 PPPISSAVTTGLM--PNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 +A T G++ + + + I + + ++ Sbjct: 495 IEDQYAADTLGMLNTKEAEYSYADDGSILIPNLHKDDDMIKA---------IRALVANEP 545 Query: 540 ERFAKILRKWARS 552 E ++++ W + Sbjct: 546 ELSTQVVKNWLQD 558 >gi|332533127|ref|ZP_08408996.1| flagellar M-ring protein FliF [Pseudoalteromonas haloplanktis ANT/505] gi|332037409|gb|EGI73863.1| flagellar M-ring protein FliF [Pseudoalteromonas haloplanktis ANT/505] Length = 571 Score = 348 bits (892), Expect = 2e-93, Method: Composition-based stats. Identities = 96/558 (17%), Positives = 224/558 (40%), Gaps = 23/558 (4%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 +Q + + + R + L + + + + + + P L K++ ++ + Sbjct: 27 EQKSGYLSALNGVDVLRQVTLVIALAICLAIAIFIIIWARQPDMRPL-GKMQTEELIQTL 85 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L I++++ +G+ +SV S ++ + +GL SG ++ + FG++ Sbjct: 86 DFLDAQKIEYQL--DGNVVSVDESEYQNIKLLMTREGL-EQGPASGSDIIMQDMGFGVSQ 142 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 ++ E ++ARTI+ ++ I A+V + +P F + +P+A+V++ Sbjct: 143 RLERERLKHGREQQLARTIEELNNITRAKVLLAIPKENVFARREKKPSATVVLTLKRGRS 202 Query: 185 Y--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHE 240 + +++ ++A+AV L+ VTV D G+LL + K + + + E Sbjct: 203 LDREEVDSVVDMIASAVQGLEPARVTVTDQNGRLLNSGSQSSLAARSRKEYDLERKREQE 262 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I+ L +G+ N+ + V ++ + + + Y+PD RS ++ + Sbjct: 263 YLEKIDSILIPVVGLANYTAQVDLSMDFSSVEETQKRYNPDLPAVRSETTFEENNIGGLA 322 Query: 301 QP-----ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 + + N+P + + + KE NYE++T + + Sbjct: 323 VGIPGALTNQPPLNSNIPEDAGQGGAGTATSPTRSHKEATRNYELDTTISHKRQQSGVIR 382 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 R+S++V V+ G + + L+ I +++ G + +RGD + + ++ F+ Sbjct: 383 RISVSVAVDYVPKVGENGETTMAPRSVEALSNIRRLLQGGVGFDMQRGDALEVVTVPFVR 442 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + V + D + V+ ALV +V L+ + L+RL DD + E Sbjct: 443 EATNLAIEVPLWEQDWFMKIARLVLGALVIIV---LIMAVVKPMLKRLIYPDDTLE-EYD 498 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 ++ S I L + + A + D +L + + + ++ Sbjct: 499 EDALSSGVDIGDNTLDMLNKDFDSASVGFSSDGTLQLPDLHGDEDLLKA------IRALV 552 Query: 536 EINEERFAKILRKWARSE 553 E +++++ W + Sbjct: 553 ANEPELSSQVVKAWLTED 570 >gi|170725973|ref|YP_001759999.1| flagellar MS-ring protein [Shewanella woodyi ATCC 51908] gi|169811320|gb|ACA85904.1| flagellar M-ring protein FliF [Shewanella woodyi ATCC 51908] Length = 568 Score = 347 bits (890), Expect = 3e-93, Method: Composition-based stats. Identities = 106/559 (18%), Positives = 231/559 (41%), Gaps = 37/559 (6%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 G + R ++LA I + + +F+ + P + L K+ D+ ++ L + + Sbjct: 31 GGVDMLRQVTMVLALAICLAVAVFV--MLWAQEPEFRPL-GKMATEDMIQVLDVLDKNKV 87 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 ++I G + VP + ++ L+ +G+ S+S+++ Y + + FG++ M++ Sbjct: 88 AYKIE--GDVVKVPEEKYQEVKLMLSREGVDSASNSTDY--LSQDSGFGVSQRMEQARLK 143 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN-PSVYKSAEAI 191 + E +AR I+ + + A+V + +P F + ++P+A+V+I A + ++I Sbjct: 144 HSQELNLARAIEELRSVTRAKVILAIPKENVFARNRSKPSATVVISARRAGLGQEEVDSI 203 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNINKAL 249 +VA+AV L+ VTV DS G+LL + + + L +VQ + E + L Sbjct: 204 VDIVASAVQGLEPTRVTVTDSNGRLLNSGSQDGVSARARRELELVQQKESEYRNKVESIL 263 Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309 LG +NF S V ++ + ++PD RS +++ S + Sbjct: 264 MPILGPENFTSQVDVSMDFTAVEQTAKRFNPDLPALRSEMTVENS--SNSGAIGGIPGAL 321 Query: 310 QNMPH--------VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 N P D + + KE N+E++T T + R+S++V Sbjct: 322 SNQPPMEANIPQNALDGEQSEANKNPGSSHKEATRNFELDTTISHTRQQIGVVRRVSVSV 381 Query: 362 VVNKGRLTE-VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 V+ G+ + D +A I +++ A G +++RGD I + ++ F++ + Sbjct: 382 AVDFKPGPAGEDGQVNRVPRTDQEMANIRRLLEGAVGFSTQRGDVIEVVTVPFMDQLIDE 441 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG--GKS 478 + ++ R + LV L L+ F+ L++L D + + G Sbjct: 442 APAPELWEQPWFWRAIKLAMGGLVILA---LILFIVRPMLKKLIYPDSSNLPDEPKFGDE 498 Query: 479 ILSPPPISSAVTTGLM--PNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536 + ++ T G++ P+ + + + I + + ++ Sbjct: 499 LAEIEDQYASDTLGMLNRPDAEYSYNDDGSILIPDLHKDDDMIKA---------IRALVA 549 Query: 537 INEERFAKILRKWARSEIE 555 E ++++ W + + Sbjct: 550 NEPELSTQVVKGWLQDNEQ 568 >gi|260776484|ref|ZP_05885379.1| flagellar M-ring protein FliF [Vibrio coralliilyticus ATCC BAA-450] gi|260607707|gb|EEX33972.1| flagellar M-ring protein FliF [Vibrio coralliilyticus ATCC BAA-450] Length = 582 Score = 347 bits (889), Expect = 5e-93, Method: Composition-based stats. Identities = 110/554 (19%), Positives = 237/554 (42%), Gaps = 35/554 (6%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 L R +L+L+ I V +++ + F+V P L + ++ + L + + Sbjct: 49 GDLDLLRQVVLVLSISICVALIVMLF--FWVREPEMRPLGA-YDTEELIPVLDYLDQEKV 105 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 ++++ +G++ISVP+S ++++ GL ++ +G E+ + FG++ +++ Sbjct: 106 EYKL--DGNTISVPASDYNSLKLNMVRAGL-NNERQAGDEILMQDMGFGVSQRLEQERLK 162 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEA 190 + E ++A+ I+ + + ARV + +P F + +ASV + + K ++ Sbjct: 163 LSRERQLAKAIEEMKQVRKARVLLALPKQSVFVRHNQEASASVFLTLRTGTSLKQEEVDS 222 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKA 248 + +VA+AVP + +TV D G+LL++ + K + + + + I+ Sbjct: 223 VVDMVASAVPGMKPTRITVTDQHGRLLSSGSQDAASAARRKEHELERKQEQALRDKIDSV 282 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------T 299 L LG N+ + V +L+ + +DP++ RS +D + Sbjct: 283 LIPILGFGNYTAQVDIQLDFSAIEQTRKSFDPNTPSTRSEYTLEDYNNGNVVAGVPGALS 342 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 +QP + ++ Q++ + D + S+ KE N+E++T + + R ++ Sbjct: 343 NQPPADASIPQDVAQMKDGSLMGQGSV----HKEATRNFELDTTISHERRQSGIVNRQTV 398 Query: 360 AVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 AV + N+ + G + Q D+ L I +++ A G + RGD + + SM F E ++ Sbjct: 399 AVAIKNRASVNPDTGETTYQPLSDAELQSIRQVLIGAVGFSESRGDLLNVLSMQFAEPEV 458 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 V + + +ALV +V L++ A+++L N A + Sbjct: 459 EVLTDVPIWEHPNFNDWVRWFASALVIIVVVLVLV---RPAMKKLLNP--ASDDDDDQLY 513 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 PI + T L+ D +D F S +L N + + + ++ Sbjct: 514 GPDGLPIGADGETSLIGGD---MDGGELFEFGSSIDLP---NLHKDEDVLKAVRALVANE 567 Query: 539 EERFAKILRKWARS 552 E A++++ W Sbjct: 568 PELAAQVVKNWMED 581 >gi|218778522|ref|YP_002429840.1| flagellar M-ring protein FliF [Desulfatibacillum alkenivorans AK-01] gi|218759906|gb|ACL02372.1| Flagellar M-ring protein FliF [Desulfatibacillum alkenivorans AK-01] Length = 520 Score = 347 bits (889), Expect = 5e-93, Method: Composition-based stats. Identities = 125/497 (25%), Positives = 216/497 (43%), Gaps = 19/497 (3%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +L ++ Q F+S T R + L V+ + F A F+ +P Y L+ +L D + Sbjct: 4 LLQRIAQIFQSMT---PGRRIALVVVLAGLVAAFAAMFFWAGTPEYQVLFSQLSQEDAGK 60 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L E I ++++ G+++ VP V + R+ LAA+GLP S G+E+FD+ +SF Sbjct: 61 IVSKLQEQRIPYQLAQGGTAVLVPGEQVYELRLSLAAEGLPKGGS-VGFEIFDE-SSFST 118 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T F+Q++ RAL+GE++RTI + + +A+V IV F + + TASV++ + P Sbjct: 119 TEFVQKLNYQRALQGELSRTIGQFNEVRSAKVLIVPAKDTVFVETTSPATASVLLDLVRP 178 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN----ILGKSLSIVQAIQ 238 I +LVA AV L VTV+D+TGK+ E + L + Q + Sbjct: 179 LSSGQVSGIVNLVANAVEGLGTEQVTVVDTTGKVWFKGAGEGDDAALAANNRLEMQQQTE 238 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 + ++ L +G V AE++ D ++ E YDPDS V RS + + E Sbjct: 239 DRLAKHVQSMLEQIVGPGKAIVRVRAEMDFDQEEYSEETYDPDSVVVRSQQKRTEDTVKE 298 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 T + V N P ++ T K++E +N EIN T + RLS Sbjct: 299 TP-GGATVNTMNNQPGMASGAALGQ---SRTQKQDEVTNNEINRVQRRVTKVLPTITRLS 354 Query: 359 IAVVVNKGRLT----EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 +A V++ T + + + + L + IV A G + R D +T++S F Sbjct: 355 VAAVLDGTYKTVENQDGVSTAQFVPRTAEELKQFEGIVKNAMGYSEDREDQVTVSSFQFT 414 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 + + ++++ + + LL + + + + +K E Sbjct: 415 SLPGADMAAAEAP--SAITKYLNMYGKWALLTLLMLLTFVFVVRPILKSVKPPEPEKEET 472 Query: 475 GGKSILSPPPISSAVTT 491 + A Sbjct: 473 QALEHQEMALLPEAPEE 489 >gi|332559789|ref|ZP_08414111.1| FliF2 [Rhodobacter sphaeroides WS8N] gi|332277501|gb|EGJ22816.1| FliF2 [Rhodobacter sphaeroides WS8N] Length = 533 Score = 346 bits (888), Expect = 5e-93, Method: Composition-based stats. Identities = 130/553 (23%), Positives = 239/553 (43%), Gaps = 28/553 (5%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + L+ + GR R +++ + + + + + ++ P LY L+ + + Sbjct: 6 VQNLISIWNDLD--GRRRAVVVGATVAMFLAVLGLSQL-AGRPPMALLYAGLQGAAAGEV 62 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 AL + + G S+ V ++ + R+ LA +GLP++ + +GYEL D ++ FG T Sbjct: 63 VTALEAQGAAYEVR--GDSVYVEAARRDEIRMKLAGEGLPATGA-AGYELLDGLSGFGTT 119 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 S M + +RA EGE+ARTI + + AARVHI P F++ RPTASV + + Sbjct: 120 SQMFDAAYLRAKEGELARTILASPQVKAARVHIAQPAAQPFQRE-QRPTASVTVTTSGGA 178 Query: 184 -VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242 A A +HLVA+AV L DV+V+DS L+ + + + + S E+ Sbjct: 179 VTANQARAFKHLVASAVAGLQPEDVSVIDSVMGLIRSGDEKDSATAAGESRA----AELR 234 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 N+ + L A G V ++ + I E +DP +V S + + S +++P Sbjct: 235 SNVERLLEARAGPGRAVVEVSVDVETARESIVEKSFDPKGRVPISSETQEKS--SNSTEP 292 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 VTV N+P + +S +T + E N+E++ + RL++AV+ Sbjct: 293 SPDVTVASNLPEGDAKGGTGGKS--STSETRETVNFEVSQTQRELMRQPGAIRRLTVAVL 350 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 V+ + G + + + LA + ++V +A G++ RGD +T+ S+ F E Sbjct: 351 VDGIKTVADDGTVGWEPRPEEELAVLRELVGSAVGLDESRGDRLTLRSLAF-ETPPEAGT 409 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482 + F+ L +++ + V L+ LGL +R + ++ Sbjct: 410 LAETGFLSRLGAF--DLMSLIQIGVLALVALILGLFVVRPVLTAPPRPPAAPQPLALPGY 467 Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542 A+T + + D+ + ++ RL +IE + Sbjct: 468 EGGEPALTGEI---------DDSGDLPDFPMVSSAPLDLDEEADPVARLRRLIEERQAES 518 Query: 543 AKILRKWARSEIE 555 +ILR W + E Sbjct: 519 VEILRGWMEPQRE 531 >gi|213028767|ref|ZP_03343214.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 377 Score = 346 bits (888), Expect = 6e-93, Method: Composition-based stats. Identities = 102/362 (28%), Positives = 168/362 (46%), Gaps = 29/362 (8%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 15 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 74 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 75 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 132 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + A+ HLV++AV L G+VT++D +G LLT Sbjct: 133 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 192 Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 +N R++ L ++ I+ I L+ +G N + V A+L+ ++ E Sbjct: 193 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 252 Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------------HVSDRKV 320 Y P+ ++ S+ SE P N P + + Sbjct: 253 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 312 Query: 321 PLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373 P + N++ + E SNYE++ T + +ERLS+AVVVN L + Sbjct: 313 PQTSTSTNSNNAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP 372 Query: 374 RS 375 Sbjct: 373 LP 374 >gi|254474533|ref|ZP_05087919.1| flagellar M-ring protein FliF [Ruegeria sp. R11] gi|214028776|gb|EEB69611.1| flagellar M-ring protein FliF [Ruegeria sp. R11] Length = 558 Score = 346 bits (887), Expect = 6e-93, Method: Composition-based stats. Identities = 147/574 (25%), Positives = 243/574 (42%), Gaps = 37/574 (6%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + Q+ + L + LI ++ I+ +A N+P LY LE + Sbjct: 1 MQQIKNVWAG---LDTRKRLIAVGATVIVILSVLAMSRVANTPTMQLLYAGLESGSAGDV 57 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 AL + + + G SI VP++ + R+ LA++GLP++ GYEL D ++ FG T Sbjct: 58 VRALDQRGTQYEVR--GGSIYVPATERDELRMTLASEGLPANGGR-GYELLDSLSGFGTT 114 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN-P 182 S M + RA EGE+ARTI + + ARVHI F++ A PTASV + + P Sbjct: 115 SQMFDAAYWRAKEGELARTIVASPHVTQARVHIANTGSNPFQRT-AEPTASVSVVPMGSP 173 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242 + A AIR LV++AV L + +V V+D+ G L+ + E + QA I Sbjct: 174 ITPQQANAIRFLVSSAVTGLSVDNVAVIDANGALIGSPEAAAAAGAGTDDRSQA----IR 229 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 + + + A +G N V E DT+ IRE DP+S+V S + + A S+ Sbjct: 230 ERVMRLVEARVGHGNAVVEVSVETVTDTESIREKRVDPESRVAISTDVEERADSSQN--Q 287 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 VTV N+P S +T E+ NYEI+ ++RL++AV+ Sbjct: 288 SGEVTVASNIPD--GDAASGDGSKASTSATRERVNYEISETEKEIIRGPGAIKRLTVAVL 345 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 +N T G + + + + L + +++SAA G ++ RGD IT+ SM+ + Sbjct: 346 LNGVATTNAAGETVMEPRSEEELGALRELISAAVGFSADRGDVITLKSME-MPTIEPQGT 404 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL------RRLHNIDDAK------ 470 V S +D + ++I + TL++ + + D Sbjct: 405 VVSSSILDNIYLDAMSLIQMAALALVTLILGLFVIRPILSNQASVPALGAPDGDDMGGLP 464 Query: 471 --KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV----- 523 GG + +P ++ G + N + + + + Sbjct: 465 ELPALGGGDFMANPNLGANLALDGEIQNGDGGFEPMGGMGMGSGLDELGGMGDLPALGGG 524 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIEDR 557 + RL MI +E +ILR W E E+R Sbjct: 525 QENPVDRLRSMIGERQEETVQILRGWL-EENEER 557 >gi|261252322|ref|ZP_05944895.1| flagellar M-ring protein FliF [Vibrio orientalis CIP 102891] gi|260935713|gb|EEX91702.1| flagellar M-ring protein FliF [Vibrio orientalis CIP 102891] Length = 562 Score = 345 bits (885), Expect = 1e-92, Method: Composition-based stats. Identities = 109/554 (19%), Positives = 233/554 (42%), Gaps = 35/554 (6%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 L R +L+L+ I V +++ + F+V P L V E ++ + L + + Sbjct: 29 GDLDLLRQVVLVLSISICVALIVMLF--FWVKEPEMRPLGV-YETEELIPVLDYLDQQKL 85 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 D+++ G++I VP+S ++ + GL ++ +G ++ + FG++ +++ Sbjct: 86 DYKLE--GNTILVPTSDFNTLKLDMVRAGL-NNEKQAGDDILLQDMGFGVSQRLEQERLK 142 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEA 190 + E ++++ I+ + + ARV + +P F + +ASV + + K ++ Sbjct: 143 LSRERQLSKAIEEMKQVRKARVLLALPKQSVFVRHNQEASASVFLTLKTGTNLKQEEVDS 202 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEMNINKA 248 + +V++AVP + +TV D G+LL++ + + K + + + + I+ Sbjct: 203 VVDMVSSAVPGMKPNRITVTDQHGRLLSSGTQDAASSARRKEHELERKQEQALREKIDSV 262 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------T 299 L LG N+ + V +L+ + +DP++ RS +D + Sbjct: 263 LIPILGFGNYTAQVDIQLDFSAVEQTRKSFDPNTPSTRSEYTLEDYNNGSVVAGVPGALS 322 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 +QP + ++ Q++ + D + S+ KE N+E++T + R ++ Sbjct: 323 NQPPADASIPQDVAQMKDGSLLGQGSV----HKEATRNFELDTTISHERRQTGVVNRQTV 378 Query: 360 AVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 AV V N+ + G + Q D+ L I +++ G + RGD + + SM F + Sbjct: 379 AVAVKNRAIVNPDTGETTYQPMSDAELNSIKQLLIGTVGFSEARGDLLNVLSMQFAVPET 438 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 V + + +ALV +V L++ A+++L N A + Sbjct: 439 EAIADVPIWEHPNFNDWIRWFASALVIIVVVLVLV---RPAMKKLLNP--ASDEDDDQLY 493 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 PI + T L+ D LD F S +L N + + + ++ Sbjct: 494 GPDGMPIGADGETSLIGGD---LDGGELFEFGSSIDLP---NLHKDEDVLKAVRALVANE 547 Query: 539 EERFAKILRKWARS 552 E A++++ W + Sbjct: 548 PELAAQVVKNWMQD 561 >gi|332140582|ref|YP_004426320.1| flagellar MS-ring protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327550604|gb|AEA97322.1| flagellar MS-ring protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 564 Score = 345 bits (884), Expect = 1e-92, Method: Composition-based stats. Identities = 109/560 (19%), Positives = 221/560 (39%), Gaps = 28/560 (5%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + F + S R + L V+++ + + + + P Y L K+E ++ Sbjct: 23 ENKSGFMDTLGSADMMRQMALVVVLVICVAIAIFILIWSQEPDYRPL-AKMETQELIETL 81 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 + I++++ G+++ V S R+ + QGL ++SS++G ++ + FG++ Sbjct: 82 DYMDANQIEYKLE--GNTVYVRSDEFQNIRLGMTRQGL-TNSSDAGTDIIMQDMGFGVSQ 138 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 ++ A E +IA TI+ I+ I ARV + P F + + +A+V++ A +V Sbjct: 139 RVEMERLKHAREQQIAATIEDIASIQKARVLLATPKENVFARREKKASATVVLTAKRGAV 198 Query: 185 Y--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQAIQHE 240 + A+A+ +VA+AV N++ VTV DS G+LL + + K I + + E Sbjct: 199 IAGEEADAVVDIVASAVQNMEPSKVTVTDSNGRLLNSGSQDSMSARARKEYEIERQREQE 258 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I+ L LG+ N+ + ++ + + Y+PD RS + ++ S Sbjct: 259 YLEKIDAILIPVLGIGNYTAQADVAMDFTAIEQTQRSYNPDLPAVRSEMIVEEN--SVGG 316 Query: 301 QPESAVTVEQNMPHVSDRKV-----PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 N P + +++ KE NYE++T T + Sbjct: 317 GVGGIPGALSNQPPLDSNIPENAVGGSQQTMPGRTAKESTRNYELDTTISHTKKQTGVIR 376 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 RLS++V V+ ++ G + + I +++ G + RGD++ + S+ F Sbjct: 377 RLSVSVAVDYTQVAGEDGAMTPTPRKQEEILNIRRLLQGGIGFDVTRGDSLEVVSVPFTR 436 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA-KKGEV 474 + VI LV +V + V LRRL N D+ + E Sbjct: 437 MDTGEIEDAPLWEQPGFLPILKLVIGGLVIIVLIIFVI---RPMLRRLINPDETNEADEF 493 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 L + ++ T + + + + + + + Sbjct: 494 DADEGLDLGDDTISMLTSDFDEGQVGFAPDGSLMLPDLHKDEDVLKA---------VRAL 544 Query: 535 IEINEERFAKILRKWARSEI 554 + E A++++ W + Sbjct: 545 VANEPELSAQVVKGWLMQDE 564 >gi|167043569|gb|ABZ08264.1| putative Secretory protein of YscJ/FliF family protein [uncultured marine microorganism HF4000_APKG2K17] Length = 560 Score = 345 bits (884), Expect = 2e-92, Method: Composition-based stats. Identities = 119/556 (21%), Positives = 230/556 (41%), Gaps = 43/556 (7%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 Q FF S + R IL+ ++L+ + ++ F N P + LY +E+ D I Sbjct: 38 QFQDFFGSLSLAKRITILVALGIVLIGM---VSMIFVANQPSWAPLYSNMELGDAAAIVE 94 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L E I + ++ G +I V V +AR+ LA + + S +LF S G T F Sbjct: 95 KLQENQIPYLLAPGGRTIMVEPHKVDQARLTLAKEKVTPGSGVGFLDLF-STPSLGETEF 153 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV- 184 Q + A EGE+AR I +I+ + +A+V + +P F TA++ + + Sbjct: 154 QQGVKFRVAQEGELARLISTINVVKSAKVSLAIPQKTLFSDNQEETTAAIALNLTSSGAG 213 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK---SLSIVQAIQHEI 241 K E I HLVA+AV L +V + D +G LL+ + + GK + S ++E+ Sbjct: 214 RKQIETIIHLVASAVEGLSPRNVKITDQSGTLLSRGFSDTSASGKMNDNYSYKSRFENEL 273 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 E I + + +G D R V A L D + I+E + DPD S ++ ++ S Sbjct: 274 EAKIVRQIEEVVGKDRVRVNVSATLRFDRRTIKEELVDPDQTSVVSEQVVDESSTGTRSV 333 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 P V N+P + R+ ++ KK N+E + + I ++ RLS++V Sbjct: 334 PVGPAGVTTNLPEATGREA---ATVSEFSKKNSTRNFESSRREIVLESAVGEVVRLSVSV 390 Query: 362 VVNKGRLTEVLGRS-----ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 +++ R + + ++ I +V AA G N +RGD++ + +M F Sbjct: 391 LLDNRRSQILDESGISLGRTNTPWTEAEKETIIGLVKAAMGFNEKRGDSVFVGNMPFEAA 450 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476 + +V+ ++ +++ + ++ L + L + +R + +K ++ Sbjct: 451 VEDD----KVNEIEATRVRNKFILDIVRYVALGLAILSLIMFVIRPMVQRLSSKPEDLDL 506 Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536 + +P + + + ++L + + Sbjct: 507 LMGMPATIGELEEEELEVPTERESGIPPRE-----------------------KILEIAK 543 Query: 537 INEERFAKILRKWARS 552 + + + ++ W R Sbjct: 544 QDPLKTSALIHTWLRE 559 >gi|323496555|ref|ZP_08101609.1| flagellar MS-ring protein [Vibrio sinaloensis DSM 21326] gi|323318399|gb|EGA71356.1| flagellar MS-ring protein [Vibrio sinaloensis DSM 21326] Length = 582 Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 110/554 (19%), Positives = 235/554 (42%), Gaps = 35/554 (6%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 L R +L+L+ I V +++ + F+V P L E ++ + L + + Sbjct: 49 GDLDLLRQVVLVLSISICVALIVMLF--FWVKEPEMRPLGA-YETEELIPVLDYLDQQKM 105 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 ++++ +G++I VP+S R+ + GL + N+G ++ + FG++ ++ Sbjct: 106 EYKL--DGNTILVPTSEYNSLRLDMVRAGL-NQEKNAGDDILLQDMGFGVSQRLELERLK 162 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEA 190 + E ++++ I+ + + ARV + +P F + +ASV + + K ++ Sbjct: 163 LSRERQLSKAIEEMKQVRKARVLLALPKQSVFVRHNQEASASVFLTLKTGANLKQEEVDS 222 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKA 248 + +V++AVP + +TV D G+LL++ + K + + + + I+ Sbjct: 223 VVDMVSSAVPGMKPNRITVTDQHGRLLSSGSQDPASAARRKEHELERKQEQALRDKIDSV 282 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------T 299 L LG N+ + V EL+ + +DP++ RS +D + Sbjct: 283 LIPILGFGNYTAQVDIELDFSAVEQTRKSFDPNTPSTRSEYTLEDYNNGSVVAGVPGALS 342 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 +QP + ++ Q++ + D S+ KE N+E++T + R ++ Sbjct: 343 NQPPADASIPQDVAQMKDGSGTGQGSV----HKEATRNFELDTTISHERRQTGVVNRQTV 398 Query: 360 AVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 AV + N+ + G + Q ++ LA I +++ A G + RGD + + SM F E ++ Sbjct: 399 AVAIKNRAIVNPDTGETTYQPLSEADLASIRQVLIGAVGFSEARGDLLNVLSMQFAEPEV 458 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 V + + +ALV +V L++ A+++L N A + Sbjct: 459 EVMADVPIWEHPNFNDWVRWFASALVIIVVVLVLV---RPAMKKLLNP--ASDEDDDQLY 513 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 PI + T L+ +D L+ F S +L N + + + ++ Sbjct: 514 GPDGMPIGADGETSLIGSD---LEGGELFEFGSSIDLP---NLHKDEDVLKAVRALVANE 567 Query: 539 EERFAKILRKWARS 552 E A++++ W + Sbjct: 568 PELAAQVVKNWMQD 581 >gi|239996428|ref|ZP_04716952.1| flagellar MS-ring protein [Alteromonas macleodii ATCC 27126] Length = 564 Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 108/560 (19%), Positives = 218/560 (38%), Gaps = 28/560 (5%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + F + S R + L V+++ + + + + P Y L K+E ++ Sbjct: 23 ENKSGFMDTLGSADMMRQMALVVVLVICVAIAIFILIWSQEPDYRPL-AKMETQELIETL 81 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 + ID+++ G+ + V S R+ + QGL +S ++G ++ + FG++ Sbjct: 82 DYMDANQIDYKLE--GNIVYVRSDEFQNIRLGMTRQGLTKAS-DAGTDIIMQDMGFGVSQ 138 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 ++ A E +IA TI+ I+ I ARV + MP F + + +A+V++ A +V Sbjct: 139 RVEMERLKHAREQQIAATIEDIASIQKARVLLAMPKENVFARREKKASATVVLTAKRGAV 198 Query: 185 Y--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQAIQHE 240 + +A+ +VA+AV N++ VTV DS G+LL + + K I + + E Sbjct: 199 IAGEEVDAVVDIVASAVQNMEPSKVTVTDSNGRLLNSGSQDSMSARARKEYEIERQREQE 258 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I+ L LG+ N+ + ++ + + Y+PD RS + ++ S Sbjct: 259 YLEKIDAILIPVLGIGNYTAQADVTMDFTAMEQTQRSYNPDLPAVRSEMIMEEN--SVGG 316 Query: 301 QPESAVTVEQNMPHVSDRKV-----PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 N P + +++ KE NYE++T T + Sbjct: 317 GVGGIPGALSNQPPLDSNIPENAVGGSQQTMPGRTAKESTRNYELDTTISHTKKQTGVIR 376 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 RLS++V V+ ++ G + + I +++ G + RGD++ + S+ F Sbjct: 377 RLSVSVAVDYTQVAGEDGAMTPTPRKQEEILNIRRLLQGGIGFDVTRGDSLEVVSVPFTR 436 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA-KKGEV 474 + V+ LV +V + V LRRL N D++ E Sbjct: 437 MDAGEIEDAPIWEQPGFLPILKLVVGGLVIIVLIIFVI---RPMLRRLINPDESNDADEF 493 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 L + ++ T + + + + + + + Sbjct: 494 DADEGLDLGDDTISMLTSDFDEGQVGFAPDGSLMLPDLHKDEDVLKA---------VRAL 544 Query: 535 IEINEERFAKILRKWARSEI 554 + E A++++ W + Sbjct: 545 VANEPELSAQVVKGWLMQDE 564 >gi|159045804|ref|YP_001534598.1| flagellar MS-ring protein [Dinoroseobacter shibae DFL 12] gi|157913564|gb|ABV94997.1| flagellar MS-ring protein FliF [Dinoroseobacter shibae DFL 12] Length = 558 Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 140/573 (24%), Positives = 246/573 (42%), Gaps = 36/573 (6%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++Q+ + T LG LI + +L +A +P Y LY LE + + Sbjct: 3 MEQIRTTW---TGLGLRNQLIAIAAVLGVFGALLALSRTALAPDYALLYSGLEPAAAGEV 59 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L + I ++ G+ I V + + RI LAA+GLP++ +GYEL D ++ FG T Sbjct: 60 IANLEQRGIAHQVR--GTGIYVDRAQQDRLRIALAAEGLPAAGG-AGYELLDSLSGFGTT 116 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 S M + RA EGE+ARTI S + + +ARVH+ F + PTASV + S Sbjct: 117 SQMFDAAYWRAKEGELARTIASSASVRSARVHVSAASSRPF-EARKEPTASVFLTPARGS 175 Query: 184 VYK-SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242 + A+A+R+LV++A+ + +V+++D+ + E + + + + A ++ Sbjct: 176 LSGGQADALRYLVSSAIAGMRPENVSIIDAVSGTMLTGEGPASAIAEQTTKADA----LK 231 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 + I + L A +GV N V E D ++I E V+DP+ V S ++ +S + Sbjct: 232 LRIERLLEARVGVGNAFVEVNIETERDRERIVERVFDPNGTVPVSRETTESTLQS-SRDS 290 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 E +V+V N+P D + +N + E+ NYE++ +RL++AV+ Sbjct: 291 EGSVSVASNLPD-GDANAESAKDAQNETETRERINYEVSETQREIERGPGATKRLTVAVL 349 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 VN G + + D +A++ ++V + G + RGD IT+ SM+ + + Sbjct: 350 VNGIPSVSEDGTVSFTPRPDREMADLEELVKSTVGFDETRGDVITLRSMEMPGSAAPDPV 409 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482 F ++ + L+ FLGL LR + A+ ++ P Sbjct: 410 ESSGWFAP----QPVDTMSVIQIAALALVTLFLGLFVLRPILKSAPAQAQLPAAETAGLP 465 Query: 483 PPISSAVTTG---------LMPNDNIALDSSNQDIFSHSRNLQSR---------INSYVS 524 P SA G L + A + ++ S + + + Sbjct: 466 APAGSATRAGETGSNLVARLQQSAGTAAKEATPEVLSGEISTDASDVAAAARTLTSQDEE 525 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDR 557 + RL +I+ E +IL W E R Sbjct: 526 RDPVTRLRQLIKERETETIEILSSWINENEEVR 558 >gi|221636057|ref|YP_002523933.1| flagellar M-ring protein FliF [Thermomicrobium roseum DSM 5159] gi|221157932|gb|ACM07050.1| flagellar M-ring protein FliF [Thermomicrobium roseum DSM 5159] Length = 530 Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats. Identities = 129/561 (22%), Positives = 228/561 (40%), Gaps = 41/561 (7%) Query: 3 ILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 +L + +++S L + R + + +V L + Y L+ L Sbjct: 1 MLRRFAPYWESVRERWDGLSQNRRVAIVAVGLAALFTVALLLLLQPPQQYAPLFTGLSAD 60 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 D I L + + +++S++G++ISVP V K R+ LAAQGLP S + G+ELFD+ + Sbjct: 61 DAAAIIDQLRQQGVPYKLSNDGTTISVPVEQVAKLRLALAAQGLPKSGT-LGFELFDR-S 118 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178 SFG+T F Q + RALEGE+ARTI + G+ +ARVH+V+P+ F TA+V+++ Sbjct: 119 SFGVTDFQQRVNYQRALEGELARTISQLDGVRSARVHLVIPEESLFSDQQQPTTAAVVLQ 178 Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS--LSIV 234 S + + HLV+A+VP L VTV+D +G L + G S L Sbjct: 179 LKPGSRLTDEQVRGVVHLVSASVPGLQPEHVTVVDESGNALWSGGGVAAAGGMSDHLKAQ 238 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSIRLSK 292 +A + + + +A +G +N V A + D +Q+ +Y P+ RS + Sbjct: 239 RAFETAMATQLQTVVARVVGNNNAAVQVSASFDWDQRQVDSEIYSPNGTQPQVRSQQERV 298 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 S P V+ N+ + ++ + ++ +E NYE++ + Sbjct: 299 QTSEGTASGPIGIPGVDSNVGSYQEGAA--QQNQQRSELRETTVNYELSRQVERVVQAPG 356 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 K++RLS+AVV+N + + ++ +V+AA GI RGD +T++ + Sbjct: 357 KVQRLSVAVVLNSAAVDPAVA------------EQVRDLVAAAAGIVPERGDQVTVSVVP 404 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F S L ++ LL + L + Sbjct: 405 FTTATAEESAAQP-----TLMDRLLEAARLGAIVLIPLLALLIAWRVLAAQRSALPPVPR 459 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 +L +A + + + S + L Sbjct: 460 YEVATQVLPGAAAGAAAPSVAGGGAAGLPGQAEAALKPPSGPPP----------TLRELQ 509 Query: 533 HMIEINEERFAKILRKWARSE 553 + + + A ++R W E Sbjct: 510 ELAKKDPATVAHVVRAWLNEE 530 >gi|254510010|ref|ZP_05122077.1| flagellar M-ring protein FliF [Rhodobacteraceae bacterium KLH11] gi|221533721|gb|EEE36709.1| flagellar M-ring protein FliF [Rhodobacteraceae bacterium KLH11] Length = 530 Score = 344 bits (882), Expect = 3e-92, Method: Composition-based stats. Identities = 143/553 (25%), Positives = 234/553 (42%), Gaps = 26/553 (4%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + Q+ + SL R + +I+A + + + +A V +P LY LE I Sbjct: 1 MQQIGTVWA---SLDRRKQIIVAGAVALVFLGVLAMSRIVTAPSMTLLYAGLESGAAGDI 57 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 AL + + + I G SI VP + + R+ LA++G+P++ N GYEL D ++ FG T Sbjct: 58 VRALDQRGVAYEIR--GGSIYVPGAQRDELRLTLASEGMPANG-NRGYELLDSLSGFGTT 114 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 S M + RA EGE+ARTI + ARVHI F++ A PTASV + Sbjct: 115 SQMFDAAYWRAKEGELARTIVGSPYVSQARVHIANGSANPFQRSVA-PTASVYLVPSGAQ 173 Query: 184 VY-KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242 + A+AIR LVA+A+ L +VTV+DS G ++ A E Q + Sbjct: 174 ITGDQAKAIRFLVASAISGLAPENVTVVDSNGAVIGAQETAAAADTADDKARQ-----LR 228 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 + + + A +G N V + T+ IRE +DP +V S + + + T Sbjct: 229 EKVLRLVEARVGTGNAVVEVSVDTVTKTESIRERRFDPKGRVAISTDVEERSDN--TRNQ 286 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 S VTV N+P + N + E+ NYE++ + ++RL++AV+ Sbjct: 287 SSDVTVASNLPD--GDGAGGDETNSNATQTRERVNYEVSETELEVHRAPGAIKRLTVAVL 344 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 VN R+ + G + + L + ++V++A G ++ RGD IT+ S+D L Sbjct: 345 VNGARMVDGNGIESFEPMPQPELDALEELVASAVGFDADRGDVITLKSLD-LPAVEPQGT 403 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482 S + ++I V + +L++ + + A Sbjct: 404 LASASIWQRIHLDAMSLIQMAVLALVSLVLGLFVIRPILTKSAAAPALLPAANAPEADVA 463 Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542 P ++ + TG N L Q N + + RL MI +E Sbjct: 464 PYLTGEIATGDAGNFT-PLPDPGQSNVPAIANAPG-------EDAVDRLRAMIGDKQEET 515 Query: 543 AKILRKWARSEIE 555 +ILR W E Sbjct: 516 VEILRSWLEEGEE 528 >gi|312884805|ref|ZP_07744497.1| flagellar MS-ring protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309367457|gb|EFP95017.1| flagellar MS-ring protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 582 Score = 343 bits (881), Expect = 3e-92, Method: Composition-based stats. Identities = 120/566 (21%), Positives = 235/566 (41%), Gaps = 37/566 (6%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 ++ + S R L+L++V+ + + + ++ + LY + E D I Sbjct: 33 KVKSLWSSS-----QRNLVLSAVLAAIVAAIIVVALWSSTQSFRPLYSQQESFDTGDIIS 87 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L NI++R+ + + VP V + R+ LAA+G+ + G + + +S G + F Sbjct: 88 VLEAENINYRLQEQNGQVLVPEGEVARIRMLLAAKGV-KAKLPMGLDSLQEDSSLGTSQF 146 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAINP-- 182 ++ LEGE+ RTI S++ + ARVH+ +P F + P+ASVM+ Sbjct: 147 IETARYRHGLEGELIRTIISLNSVANARVHLAIPRQTLFVRQDREAPSASVMLELRPGEE 206 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA---NEMERNILGKSLSIVQAIQH 239 + EAI +LV +V + V+V+D G+LL+A +E + K L + ++ Sbjct: 207 LNSEQVEAIVNLVVGSVTGMKPEQVSVVDQYGRLLSAEIGSEQAGKVNAKYLEYQKNVEK 266 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 +I + L LG N+R V A++N + + + D V++ ++ ++ Sbjct: 267 QIIQRASDMLTPILGPSNYRVQVSADMNFSQVEETQEILDATPVVQKEHTITNNSVDQ-- 324 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 N P V+ + P S + E Y + + T + K+E+LS+ Sbjct: 325 -IALGVPGTLSNQPPVT-GEAPTQDSQNTNARAEINRQYAVGSSVRRTQYQQGKVEKLSM 382 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 +V++N+ + L D +I+ +++ A GI + RGD+++I S F + Sbjct: 383 SVLLNESAAPDGL------AWTDDEKNQISTMLADAVGITNDRGDSLSIMSFSFTPISI- 435 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + + D TV + +++G +L + LR L + + Sbjct: 436 EAPVSLPWWQD------PTVQQPMRYVIGGMLGMAMIFFVLRPLIMHLTGAQNQNQSDDS 489 Query: 480 LSP---PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR-----L 531 ++P P + T + + ++ S L + S L L Sbjct: 490 VAPQDEPSYDNLQTRAEREREEVLNRKLSERGIEASNGLDVGNDMLPPAGSPLEIQLKHL 549 Query: 532 LHMIEINEERFAKILRKWARSEIEDR 557 + + ER A++L++W +R Sbjct: 550 QLIADEEPERVAEVLKQWVNENEHNR 575 >gi|120597294|ref|YP_961868.1| flagellar MS-ring protein [Shewanella sp. W3-18-1] gi|146294561|ref|YP_001184985.1| flagellar MS-ring protein [Shewanella putrefaciens CN-32] gi|120557387|gb|ABM23314.1| flagellar M-ring protein FliF [Shewanella sp. W3-18-1] gi|145566251|gb|ABP77186.1| flagellar M-ring protein FliF [Shewanella putrefaciens CN-32] Length = 558 Score = 343 bits (881), Expect = 4e-92, Method: Composition-based stats. Identities = 129/563 (22%), Positives = 221/563 (39%), Gaps = 40/563 (7%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 ++ + Q + R +I +++ V + + + + Y LY E D + Sbjct: 20 GLIADMTQKWHKFNRGDRQ--VIALALLAVVVASVIVLMLWTATAGYRPLYGSQENVDTS 77 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 ++ L I +R+ N ++ V VG AR+ LAA+G+ + SG E D N+ G Sbjct: 78 QVLNVLEAEGIHYRLEANTGAVLVAEEQVGNARMLLAAKGV-KAKVPSGMEALD-NNALG 135 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIR-- 178 + FM++ +LEGE+ARTI S+ + AARVH+ +P F + PTASVM++ Sbjct: 136 TSQFMEQAKYRHSLEGELARTIMSLKLVRAARVHLAIPKQSLFIRQEPELPTASVMLQLD 195 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG----KSLSIV 234 EAI +LVA +V L ++ V+D G+ L+ N L K L Sbjct: 196 PNTRLSESQVEAIVNLVAGSVTGLTASNIKVVDQDGRYLSENISGNQDLSQSRNKQLQYT 255 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 + ++H + N L LG DNF+ V A++N + + + DP + V + Sbjct: 256 RELEHSLVANAASMLEPVLGHDNFQVRVTAKVNFNQVEETKESLDPQNVV---TQERTSI 312 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 S S N P ++ K+EE Y++ + +L Sbjct: 313 DDSSNSIAAGIPGALSNKPPQVGTAATDDKTR--NLKQEESRQYDVGRSVRHVRYQQMQL 370 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 E LS++V++N V ++ L + +V A G ++ RGD+ TI + +F Sbjct: 371 ENLSVSVLINSAAGQGVFNN-------EAQLVKFGNMVKDAIGFSAARGDSFTINAFEFT 423 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL-----HNIDDA 469 + T + + L +++G +L L L LR L Sbjct: 424 PTVVAEIPTSPWWQSENYQSY-------LRYIIGGILGFGLILFVLRPLVKHLTRTAQIT 476 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 + T PN L S++ + S+ L + K L Sbjct: 477 APSIEPAALSAASANALDGPTVDYAPNQAHQLPSAD---WLGSQGLPEPGSPLTVKMEHL 533 Query: 530 RLLHMIEINEERFAKILRKWARS 552 L + R A+++ W Sbjct: 534 AL--LANKEPARVAEVIAHWIGD 554 >gi|119947167|ref|YP_944847.1| flagellar MS-ring protein [Psychromonas ingrahamii 37] gi|119865771|gb|ABM05248.1| flagellar M-ring protein FliF [Psychromonas ingrahamii 37] Length = 582 Score = 343 bits (881), Expect = 4e-92, Method: Composition-based stats. Identities = 117/555 (21%), Positives = 237/555 (42%), Gaps = 27/555 (4%) Query: 8 LQFFKSGTSLGR--TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 L + L + + + +V L ++ + + +S +Y LY E + + I Sbjct: 45 LSVWGKILYLLKNSRKSFAVITVFLTALVTILVILLWSSSSNYRPLYGIQEPYNNSDILA 104 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 AL NI +++ + I V V K R+ LAA+G+ ++ G + K ++ G + F Sbjct: 105 ALEAENIKYQMQPDTGLILVEDGEVAKIRMLLAAKGV-KATLPEGLSVLGKQSALGTSQF 163 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRAINPSV 184 ++ LEGE+A+TI S++ I ARVH+ +P F + TA+VM+ + Sbjct: 164 IENARYNLGLEGELAKTIMSLNAINNARVHLAIPKENLFVGRGDNIATAAVMLDVKSGDK 223 Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQH 239 +I +LVA +V NL+ V++ D +G+LL+ + + K L I+ Sbjct: 224 LSVAQITSIMNLVAGSVNNLNPESVSITDQSGRLLSDDVNDGEYSLASSKQLEYKAGIEQ 283 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 +I+ L LG +NFR A+++ +Q +D + V S +D +S+ Sbjct: 284 QIKKQAKSMLIPILGENNFRIESAADIDFSKKQETMERFD-ATPVLLSEMSIEDDDQSDI 342 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + + P V D + P + + ++E Y + + T + K+ +S+ Sbjct: 343 AI--GIPGSLSSTPPVVDGQESTPNNSKKKLRRELNRKYAVGSSVTHTEYQQGKINHISL 400 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 +VV+NK D L++IN ++S+A G++ RGD+I +TS F Q+ Sbjct: 401 SVVINKDIAP-------DGEWTADELSKINAMISSAVGLDLNRGDSINVTSFTFSPIQVT 453 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 N + + + +++ ++ + +++ + L L + ++++ K + Sbjct: 454 N-PVAAAWYEETRWQ---SLLKIIISGLVAMMLIIVVLRPLIKHITVNNSAKDAGPLPAE 509 Query: 480 LSPPPISSAVTTGLMPN--DNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 S+ + + S + L S + + L+L + + Sbjct: 510 HQAIAQSTQDKEKEFAQRLAEYGIGETASGNDSMMQMLPSPNSPLSVQIQHLQL--ISKE 567 Query: 538 NEERFAKILRKWARS 552 + R ++IL+ W + Sbjct: 568 HPNRVSEILKNWVNA 582 >gi|315180474|gb|ADT87388.1| flagellar M-ring protein [Vibrio furnissii NCTC 11218] Length = 568 Score = 343 bits (880), Expect = 4e-92, Method: Composition-based stats. Identities = 125/574 (21%), Positives = 232/574 (40%), Gaps = 48/574 (8%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 A L+ F+ S R +++ ++ + + + +S Y LY D + Sbjct: 20 AALENAKSFWSSS-----QRNVVIITIFSMISAAIIVIMLWASSEDYRPLYSNSSNYDSS 74 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 ++ L ++ + + ++ + I VP+ V R+ LAA+GL SG++ + + G Sbjct: 75 QVLQLLDQSGLKYELNKDSGQIMVPAKDVATTRMMLAAKGL-KQQLPSGFDALESKGALG 133 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK-IGARPTASVMIRAI 180 + FM+ ALEGE+AR+I ++ I ARVH+ +P F++ + ASVM++ I Sbjct: 134 ESQFMESARYRHALEGELARSIVTMESIALARVHLAIPKTSLFKRKDQEQAQASVMVQLI 193 Query: 181 NPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL---GKSLSIVQ 235 + KSA+ +I +LV+ A+ L +V V+D G+LL+ + +I + + Sbjct: 194 DGMDLKSAQVTSIVNLVSGAIIGLKPENVRVIDQYGRLLSKDGSMGDISHSGDRQNDFRR 253 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 ++ + + L LG NFR V A+++ +Q E Y + V RS + D Sbjct: 254 TLETRLVSQASDMLTPILGAANFRVQVAAKVDFSKRQETEESYG--APVMRSETIFNDEN 311 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 + N P V+D N + E + Y + + + H LE Sbjct: 312 SGSMAL--GIPGALSNTPPVTDGDTNTTPESRNV-RNEAKREYAVGGRVVHVQHQQGVLE 368 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 +L+I+V+VN+ T +G D LA I ++ A G ++ RGD I ++S F+ Sbjct: 369 KLTISVIVNEHNATS-------EGWSDESLARITNVIQNAVGYDAVRGDQIYVSSFPFVV 421 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI-----DDAK 470 + + + D +V A + G L+ L + LR L +D Sbjct: 422 SAM-KEVEPLAWYKD------PSVFQAAKYGFGVLMSVLLIVLVLRPLAQFLTKPDNDES 474 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS------ 524 + + + +A L+ + S L + Sbjct: 475 SDAKALNELSAESAMGTAGDEALLASQAGQAPSLPNHSPQELDTLSLDAAGIKALHDTLP 534 Query: 525 ------KQSDLRLLHMIEINEERFAKILRKWARS 552 + L + + + +R +ILR W + Sbjct: 535 ESDSPLEIQIQHLKTIAQNDPQRVTEILRTWMNA 568 >gi|260768771|ref|ZP_05877705.1| flagellar M-ring protein FliF [Vibrio furnissii CIP 102972] gi|260616801|gb|EEX41986.1| flagellar M-ring protein FliF [Vibrio furnissii CIP 102972] Length = 568 Score = 343 bits (880), Expect = 5e-92, Method: Composition-based stats. Identities = 125/574 (21%), Positives = 232/574 (40%), Gaps = 48/574 (8%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 A L+ F+ S R +++ ++ + + + +S Y LY D + Sbjct: 20 AALENAKSFWSSS-----QRNVVIITIFSMISAAIIVIMLWASSEDYRPLYSNSSNYDSS 74 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 ++ L ++ + + ++ + I VP+ V R+ LAA+GL SG++ + + G Sbjct: 75 QVLQLLDQSGLKYELNKDSGQIMVPAKDVATTRMMLAAKGL-KQQLPSGFDALESKGALG 133 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK-IGARPTASVMIRAI 180 + FM+ ALEGE+AR+I ++ I ARVH+ +P F++ + ASVM++ I Sbjct: 134 ESQFMESARYRHALEGELARSIVTMESIALARVHLAIPKTSLFKRKDQEQAQASVMVQLI 193 Query: 181 NPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL---GKSLSIVQ 235 + KSA+ +I +LV+ A+ L +V V+D G+LL+ + +I + + Sbjct: 194 DGMDLKSAQVTSIVNLVSGAIIGLKPENVRVIDQYGRLLSKDGSMGDISHSGDRQNDFRR 253 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 ++ + + L LG NFR V A+++ +Q E Y + V RS + D Sbjct: 254 TLETRLVSQASDMLTPILGAANFRVQVAAKVDFSKRQETEESYG--APVMRSETIFNDEN 311 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 + N P V+D N + E + Y + + + H LE Sbjct: 312 SGSMAL--GIPGALSNTPPVTDGDTNATPESRNV-RNEAKREYAVGGRVVHVQHQQGVLE 368 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 +L+I+V+VN+ T +G D LA I ++ A G ++ RGD I ++S F+ Sbjct: 369 KLTISVIVNEHSATS-------EGWSDESLARITNVIQNAVGYDAVRGDQIYVSSFPFVV 421 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI-----DDAK 470 + + + D +V A + G L+ L + LR L +D Sbjct: 422 SAM-KEVEPLAWYKD------PSVFQAAKYGFGVLMSVLLIVLVLRPLAQFLTKPDNDES 474 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS------ 524 + + + +A L+ + S L + Sbjct: 475 SDAKALNELSAESAMGTAGDEALLASQAGQAPSLPNHSPQELDTLSLDAAGIKALHDTLP 534 Query: 525 ------KQSDLRLLHMIEINEERFAKILRKWARS 552 + L + + + +R +ILR W + Sbjct: 535 ESDSPLEIQIQHLKTIAQNDPQRVTEILRTWMNA 568 >gi|51246508|ref|YP_066392.1| flagellar M-ring protein (FliF) [Desulfotalea psychrophila LSv54] gi|50877545|emb|CAG37385.1| related to flagellar M-ring protein (FliF) [Desulfotalea psychrophila LSv54] Length = 545 Score = 343 bits (879), Expect = 6e-92, Method: Composition-based stats. Identities = 130/551 (23%), Positives = 244/551 (44%), Gaps = 41/551 (7%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 FF +R L L +V+++ + F + LY L +D ++ L Sbjct: 29 KNFFTLLRDWPLSRQLSLGAVLILCLAAFATIIIQTRTVDQQLLYANLSATDAAAVTEWL 88 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 I + + D+G S+ + S+ + +AR+ LAA GLP S G+E+FDK N F LT+++Q Sbjct: 89 KGQKIPYSLKDSGKSVWIGSNKIYQARLDLAANGLP-SGGGVGFEVFDKQN-FALTNYVQ 146 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV--Y 185 +I RAL+GE+ARTI S++ I + RVH+ +P+ F+ + TASV++ + Sbjct: 147 KINYSRALQGELARTISSLAPIESTRVHLAIPEKRLFKNQQKQATASVILSLVPGKTLSQ 206 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAIQHEIE 242 + E I +LVA +VP L+ +V VLDS+G +L N +R + L+ + I+ ++E Sbjct: 207 EQVEGIAYLVAGSVPGLETDNVKVLDSSGVILGDREQNGGDRALSSDMLAFQKEIETQME 266 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 M L +G D+ V A ++ + E +D D V RS +++ ++ S ++ Sbjct: 267 MRAQDLLTRTMGADHALVRVTATVDFAKVEKTEEFFDADDPVIRSEQINNES--SRGAEA 324 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 VE N+ + P +++N +NYEI+ + +++LS++V+ Sbjct: 325 GGIPGVESNLQGTQKKSGTGPSAVKNG----RTTNYEISKTISHIVNPVGTVKKLSVSVL 380 Query: 363 V-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 V ++ +L + + L + +V++A G+ + RGD I + SM F ++ Sbjct: 381 VADRQKLDPDTQEPSYTPFSTTELKALENMVASAIGLVATRGDVINVISMPFFQDPQEFE 440 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 + L R+ ++ L+ L+ + FL + + + + Sbjct: 441 TDQDDTME--LVRNSMPLVKYLLALLAIFFLYFLLVRPILKTVKGEV------------- 485 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 + T M + Q + + + +++R M E Sbjct: 486 ---LQHNKTVDEMEKE-------QQRRNQEKKEESTPLPPLDIALANIRQEVMQEHTP-- 533 Query: 542 FAKILRKWARS 552 A I++ W Sbjct: 534 TAFIVKNWIHE 544 >gi|308050036|ref|YP_003913602.1| flagellar M-ring protein FliF [Ferrimonas balearica DSM 9799] gi|307632226|gb|ADN76528.1| flagellar M-ring protein FliF [Ferrimonas balearica DSM 9799] Length = 540 Score = 342 bits (878), Expect = 7e-92, Method: Composition-based stats. Identities = 117/563 (20%), Positives = 225/563 (39%), Gaps = 47/563 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 MA L L ++ + R ++I +V+ + + + S Y LY E D Sbjct: 18 MARLRGLWARWQGASRSDRQVLVI--AVMATVVATVIVLVLWTASRGYRPLYGSQEGFDS 75 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L I +R+ + I V +G+AR+ LAA+G+ + +G EL DK + Sbjct: 76 AEIIEVLEAEKIPYRMQADSGQILVLEDQLGRARMTLAARGI-RAKMPAGMELLDKAGAL 134 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG-ARPTASVMIRA 179 G + F++E LEGE++RTI ++ + +ARVH+ +P F + +P+A+VM+ Sbjct: 135 GSSQFLEEARYRLGLEGELSRTIMAMKAVRSARVHLAIPKRTLFIRQQPEKPSAAVMLEL 194 Query: 180 INPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG----KSLSI 233 + + EAI +LV AV + + V+V+D G+LL+A+ L + L+ Sbjct: 195 YSGATLSRDQVEAIVNLVVGAVTAMPVDAVSVVDQNGRLLSADLELAQELARSGERQLTY 254 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293 Q ++ + + L LG N+R V A +N D + DP++ V R + Sbjct: 255 NQQMEQALNQRASDMLQPILGYGNYRVQVAARVNFDQIEETREQVDPENTVV--TREASR 312 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 + + N P ++ +N + E+ +E + T + Sbjct: 313 SDTRGGNLAIGIPGALSNQPPATNADEEEAAPAQNLSSESERY-FETSRAVRHTKFQQAQ 371 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 LERLS++V++N S + L ++ ++V A G + RGD++++ + F Sbjct: 372 LERLSVSVLLN----------SEAGQWSQAQLDQLGQLVQDAIGFEAARGDSLSLHAFPF 421 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 + + ++ + + L+ + L + L L + ++ Sbjct: 422 AAQPVPEMEPLPWW----QTQEYQLYLRYLIGALLGLGLILFVLRPLVKHLTRTVEQEKA 477 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 + + P V + P L ++ + L L Sbjct: 478 QAEAAQAALLPKHEPVVEPVTPE------------------LPPPGSALSVQLEHLSL-- 517 Query: 534 MIEINEERFAKILRKWARSEIED 556 + R A+++ +W + D Sbjct: 518 LANEEPARVAEVITQWMSNNERD 540 >gi|74101647|gb|AAZ99737.1| FliFL [Aeromonas hydrophila] Length = 580 Score = 342 bits (878), Expect = 8e-92, Method: Composition-based stats. Identities = 127/559 (22%), Positives = 232/559 (41%), Gaps = 39/559 (6%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLF-MAARFFVNSPHYDNLYVKLEVSDV 60 + ++ + ++ SL R IL +L I+ + + +S +Y LY K E+ D Sbjct: 14 SFRTRVQEGLRNWRSLSRDNKSILTIALLAAIVAGTIVVILWTSSKNYVPLYGKQELYDT 73 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L + + FR+ + I VP S + R+ LAA+G+ ++ +G E D V Sbjct: 74 ANIMEMLEKEQVPFRLEKSTGQILVPESQLAHVRMALAARGV-RAAMPAGLEGLDNVTGL 132 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRA 179 G + FM+ ALEGE+ARTI S+ + +ARVH+ +P F + +P+ASVM+ Sbjct: 133 GTSEFMEGARYRHALEGELARTIISLDAVRSARVHLAIPKRTLFVGRDEEKPSASVMLDL 192 Query: 180 INPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK----SLSI 233 + EAI +LVA ++ + G VT++D G+LL+A ++ GK + Sbjct: 193 QPGQAMELGQVEAIANLVAGSISGMKPGAVTIVDQAGQLLSAELGDKAGFGKQSVQQMEY 252 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293 V+ ++ I + L LG NFR + A++N + + + DP V + S Sbjct: 253 VRKLEQYIRQRASDMLYPMLGTGNFRVQIAADVNFNAVEETQQQLDPQGVV---TKESTK 309 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSN------------YEIN 341 + ++ + N P + K P + + T E Q N YE + Sbjct: 310 SDKTIDALALGIPGALSNRPPETTPKSEQPAANQGTTSSETQKNDSRTERQEINKQYENS 369 Query: 342 TKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR 401 + T + +LE++++++++N+ + G L +I ++V + G + Sbjct: 370 RTIVHTRYQQGRLEKMNVSILLNQQSAPK-------DGWSAEQLEQIRQMVERSVGFDDA 422 Query: 402 RGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461 RGD I++ DF ++ L+ L + L Sbjct: 423 RGDQISLQVFDFTGAVPIAPPESGWWETPYWQDSLRYLVGGLLGLTLVFFGIRPLVKHLV 482 Query: 462 RLHNIDDAKKGEVGGKSILSPPPIS------SAVTTGLMPNDNIALDSSNQDIFS--HSR 513 R + D + E + +S +A+T +M N I D+ + FS + Sbjct: 483 RTQQLPDEEPAEEQDEQQEPTVGLSMRRDDDAALTAPMMSNGLIRADNQMEPQFSSLNLE 542 Query: 514 NLQSRINSYVSKQSDLRLL 532 L + + L++ Sbjct: 543 ALPEPGSELEVQLQHLQVA 561 >gi|21672359|ref|NP_660426.1| flagellar MS-ring protein [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008478|sp|Q8KA45|FLIF_BUCAP RecName: Full=Flagellar M-ring protein gi|21622963|gb|AAM67637.1| flagellar M-ring protein [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 556 Score = 342 bits (877), Expect = 9e-92, Method: Composition-based stats. Identities = 116/575 (20%), Positives = 238/575 (41%), Gaps = 62/575 (10%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + F R +L + ++ ++ ++ + SP Y LY L D I Sbjct: 15 KKFNNFLSYFFKNSR----VLIILFVLAVITTVSISMWRKSPDYQVLYNNLSNEDGEMII 70 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L++ I +++S++ + VP V + R+H + P + GYE+ DK FG++ Sbjct: 71 DQLNQMQIPYKLSEDSGQLLVPKDKVYELRLHFSENNSPH--RDIGYEILDKE-RFGVSQ 127 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI--NP 182 F ++I RALEGE+ARTI+ I+ + A++HI P F + +P+ SV++ Sbjct: 128 FGEQINYQRALEGELARTIEKINVVKNAKIHIAFPKNSLFLEDKKKPSVSVILNLKSNQG 187 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK-SLSIVQAIQHEI 241 + AI HL+++++ +L + ++T++D GKLL + + N + L + ++ Sbjct: 188 LDHSQVNAILHLISSSICDLSIENITIIDQFGKLLNNSSLGLNQIDDLKLRYSEEVESRY 247 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD----SKVERSIRLS------ 291 I L LG +N + V A++N ++ + + Y P+ ++ RS + + Sbjct: 248 RNRIKNILEPLLGFNNVYAQVTAQINFNSHEKTQEKYTPNTNYKNQAIRSRQSTVNDKIN 307 Query: 292 --KDAQRSETSQPESAVTVEQNMPHV------------SDRKVPLPRSLENTDKKEEQSN 337 K+ + + P+++ + +++ + + + ++ N Sbjct: 308 NRKEENKPDELFPQTSFSSNKDLNSTTYSNKKIKKSIIQNNQDNNILHSNSAISHDDTIN 367 Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG 397 YE+N T + +++RLS AV+VN + + G+S + +I +V A G Sbjct: 368 YELNHSLSHTKMNIGEIKRLSAAVIVN--FVKDKNGKSV--PINVEQIKKIKNLVREAIG 423 Query: 398 INSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457 + RGD++ + + F + N + D +F + +TF Sbjct: 424 YSKVRGDSVYVVNESFFQ---KNKNSPIKLLKDSNQSNFYST-----------FLTFTPW 469 Query: 458 HALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS 517 K K+ ++ + L+ D A ++ ++ FS + N Sbjct: 470 FISLFFLFFLVKKCFFSSSKNNINNQSYKNKTEEDLLEKDTKA-ENISELKFSKTSNTDK 528 Query: 518 RINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 I ++ ++ N A I+R+W Sbjct: 529 LI---------HQICNISNQNPRIIASIIRQWMSD 554 >gi|37680665|ref|NP_935274.1| flagellar MS-ring protein [Vibrio vulnificus YJ016] gi|37199414|dbj|BAC95245.1| polar flagellar M-ring protein FliF [Vibrio vulnificus YJ016] Length = 581 Score = 342 bits (877), Expect = 1e-91, Method: Composition-based stats. Identities = 110/554 (19%), Positives = 237/554 (42%), Gaps = 36/554 (6%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 L R +L+L+ I V +++ + F+V P L V E ++ + L + I Sbjct: 49 GDLDLLRQVVLVLSISICVALIVMLF--FWVKEPEMRPLGV-FETEELIPVLDHLDQQKI 105 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 ++++ +G++I V +S ++ + GL + S+ +G ++ + FG++ +++ Sbjct: 106 NYKL--DGNTILVETSEFNSIKLDMVRSGL-NQSTQAGDDILLQDMGFGVSQRLEQERLK 162 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEA 190 + E ++ + I+ + + A+V + +P F + +ASV + S K ++ Sbjct: 163 LSRERQLGKAIEEMKQVRKAKVLLALPKQSVFVRHNQEASASVFLTLNTGSNLKQQEVDS 222 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNINKA 248 I +VA+AVP + VTV D G+LL + + K + + + + I+ Sbjct: 223 IVDMVASAVPGMKTSRVTVTDQHGRLLNSGSQDPVSAARRKEQELERNQEQALREKIDSV 282 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------T 299 L LG N+ + V E++ + +DP++ RS +D + Sbjct: 283 LIPILGFGNYTAQVDIEMDFSAVEQTRKQFDPNTPATRSEYALEDYNNGNMVAGVPGALS 342 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 +QP + ++ Q++ + D V S+ +KE N+E++T + R ++ Sbjct: 343 NQPPADASIPQDVAQMKDGSVLGQGSV----RKESTRNFELDTTISHERKQMGVINRQTV 398 Query: 360 AVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 AV + ++ + G + ++ + I +++ G + RGD + + SM F E + Sbjct: 399 AVAIKDRATINPDTGDVTYTPRSEAEINAIRQVLVGTVGFSENRGDLLNVLSMPFAEPEQ 458 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 V + + +ALV +V L++ A+++L N + E+ G Sbjct: 459 EQLADVPIWEHPNFNDWIRWFASALVIIVVILVLI---RPAMKKLLNPAGDDEDEMYGPD 515 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 L PI + T L+ +D +D+ F S +L N + + + ++ Sbjct: 516 GL---PIGADGETSLIGSD---IDAGELFEFGSSIDLP---NLHKDEDVLKAVRALVANE 566 Query: 539 EERFAKILRKWARS 552 E A++++ W + Sbjct: 567 PELAAQVVKNWMIN 580 >gi|332994121|gb|AEF04176.1| flagellar MS-ring protein [Alteromonas sp. SN2] Length = 564 Score = 342 bits (877), Expect = 1e-91, Method: Composition-based stats. Identities = 109/560 (19%), Positives = 226/560 (40%), Gaps = 28/560 (5%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + F + S R + L V+++ + + + + P + L K+E ++ Sbjct: 23 ENKSGFMDTLGSADMMRQMALVVVLVICVAIAVFILIWAQEPDFRPL-AKMETQELIETL 81 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 + I++R+ G+++ V S R+ + QGL + SS++G ++ + FG++ Sbjct: 82 DYMDANQIEYRLE--GNTVYVRSDEFQTIRLGMTRQGL-TGSSDAGTDIIMQDMGFGVSQ 138 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 ++ A E +IA TI+ IS I ARV + MP F + + +A+V++ A V Sbjct: 139 RVEMERLKHAREQQIAATIEDISSIQKARVLLAMPKENVFARREKKASATVVLTAKRGKV 198 Query: 185 Y--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQAIQHE 240 + +++ +VA+AV N++ VTV DS G+LL + + K I + + E Sbjct: 199 IAGEEVDSVIDIVASAVQNMEPSAVTVTDSNGRLLNSGSQDSLSARARKEYEIERQREQE 258 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I+ L LG+ N+ + ++ + + Y+PD RS +++ S Sbjct: 259 YLEKIDAILIPVLGIGNYTAQADVSMDFTALEQTQRSYNPDLPAVRSEMINEQN--SVGG 316 Query: 301 QPESAVTVEQNMPHVSDR-----KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 N P + + +L + K NYE++T T + + Sbjct: 317 GAMGIPGALTNQPPLDSNIPENPEAGAQATLPGSTSKVSTRNYELDTTISHTKKQSGVIR 376 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 RLS++V V+ ++ G ++ + + L I +++ G + RGD++ + S+ F Sbjct: 377 RLSVSVAVDYLQVAGEDGTTSAEPRNQEALLNIRRLLQGGVGFDVTRGDSLEVVSVPFTR 436 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG-EV 474 + VI LV +V + V LRRL N D++K+ + Sbjct: 437 MDDGVIEDAPIWEQPAFLPILKLVIGGLVIIVLIIFVI---RPMLRRLINPDESKEADDF 493 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 L + ++ + + + + + + + + + Sbjct: 494 DADEGLDLGDETISMLSTDFDEGQVGFAADGSLMLPDLHKDEDVLKA---------VRAL 544 Query: 535 IEINEERFAKILRKWARSEI 554 + E A++++ W + Sbjct: 545 VANEPELSAQVVKGWLMQDE 564 >gi|27365280|ref|NP_760808.1| flagellar MS-ring protein [Vibrio vulnificus CMCP6] gi|320155664|ref|YP_004188043.1| flagellar M-ring protein FliF [Vibrio vulnificus MO6-24/O] gi|27361427|gb|AAO10335.1| flagellar M-ring protein FliF [Vibrio vulnificus CMCP6] gi|319930976|gb|ADV85840.1| flagellar M-ring protein FliF [Vibrio vulnificus MO6-24/O] Length = 581 Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats. Identities = 110/554 (19%), Positives = 236/554 (42%), Gaps = 36/554 (6%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 L R +L+L+ I V +++ + F+V P L V E ++ + L + I Sbjct: 49 GDLDLLRQVVLVLSISICVALIVMLF--FWVKEPEMRPLGV-FETEELIPVLDHLDQQKI 105 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 ++++ +G++I V +S ++ + GL + S+ +G ++ + FG++ +++ Sbjct: 106 NYKL--DGNTILVETSEFNSIKLDMVRSGL-NQSTQAGDDILLQDMGFGVSQRLEQERLK 162 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEA 190 + E ++ + I+ + + A+V + +P F + +ASV + S K ++ Sbjct: 163 LSRERQLGKAIEEMKQVRKAKVLLALPKQSVFVRHNQEASASVFLTLNTGSNLKQQEVDS 222 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNINKA 248 I +VA+AVP + VTV D G+LL + + K + + + + I+ Sbjct: 223 IVDMVASAVPGMKTSRVTVTDQHGRLLNSGSQDPVSAARRKEQELERNQEQALREKIDSV 282 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------T 299 L LG N+ + V E++ + +DP++ RS +D + Sbjct: 283 LIPILGFGNYTAQVDIEMDFSAVEQTRKQFDPNTPATRSEYALEDYNNGNMVAGVPGALS 342 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 +QP + ++ Q++ + D V S+ +KE N+E++T + R ++ Sbjct: 343 NQPPADASIPQDVAQMKDGSVLGQGSV----RKESTRNFELDTTISHERKQMGVINRQTV 398 Query: 360 AVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 AV + ++ + G + ++ + I +++ G + RGD + + SM F E + Sbjct: 399 AVAIKDRATINPDTGDVTYTPRSEAEINAIRQVLVGTVGFSENRGDLLNVLSMPFAEPEQ 458 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 V + + +ALV +V L++ A+++L N E+ G Sbjct: 459 EQLADVPIWEHPNFNDWIRWFASALVIIVVILVLI---RPAMKKLLNPAGDDDDEMYGPD 515 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 L PI + T L+ +D +D+ F S +L N + + + ++ Sbjct: 516 GL---PIGADGETSLIGSD---IDAGELFEFGSSIDLP---NLHKDEDVLKAVRALVANE 566 Query: 539 EERFAKILRKWARS 552 E A++++ W + Sbjct: 567 PELAAQVVKNWMIN 580 >gi|294636866|ref|ZP_06715198.1| flagellar M-ring protein FliF [Edwardsiella tarda ATCC 23685] gi|291089927|gb|EFE22488.1| flagellar M-ring protein FliF [Edwardsiella tarda ATCC 23685] Length = 419 Score = 341 bits (875), Expect = 2e-91, Method: Composition-based stats. Identities = 102/386 (26%), Positives = 176/386 (45%), Gaps = 37/386 (9%) Query: 22 ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81 + L V I + + + +P Y LY + D I LS+ NI +R ++NG+ Sbjct: 32 KIPLLLASAVAIAIVVVLALWARAPDYRVLYSNISDRDGGAIVTQLSQMNIPYRFANNGT 91 Query: 82 SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 ++ VP+ V R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE+AR Sbjct: 92 TLMVPADKVYDLRLKLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELAR 149 Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAV 199 TI+++ +V+ARVH+ +P F + +P+ASV + AI ++V+++V Sbjct: 150 TIETLGPVVSARVHLALPKPSLFVREQKQPSASVTLTLEPGRALDDGQINAIVYMVSSSV 209 Query: 200 PNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNF 258 L G+VTV+D G LLT + R++ L ++ ++ I L LG N Sbjct: 210 AGLPPGNVTVVDQFGHLLTQPDGTGRDLNAAQLKFTSEVEGRLQRRIETILQPMLGSGNV 269 Query: 259 RSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMP-H 314 + V A+L+ ++ + Y P+ ++ S+ +S+ S N P Sbjct: 270 HAQVTAQLDFANREQTDEEYKPNQLPNQAAIRSQQISQSDQSGGQLNGGVPGALSNEPAP 329 Query: 315 VSDRKVPLPRSLENTD----------------------------KKEEQSNYEINTKSIA 346 + + PR+ T+ +++E +NYE++ Sbjct: 330 PATGNIDKPRNSTGTNGRNRNESMPSRSSTLSNNGRLASRNENIRRDETTNYEVDRTIRH 389 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVL 372 T +ERLS+AVVVN + Sbjct: 390 TQERAGGIERLSVAVVVNYATTPQGK 415 >gi|254506888|ref|ZP_05119027.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus 16] gi|219550173|gb|EED27159.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus 16] Length = 582 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 111/554 (20%), Positives = 235/554 (42%), Gaps = 35/554 (6%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 L R +L+L+ I V +++ + F+V P L E ++ + L + + Sbjct: 49 GDLDLLRQVVLVLSISICVALIVMLF--FWVKEPEMRPLGA-YETEELIPVLDYLDQQKL 105 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 D+++ +G++I VPSS ++ + GL + N+G ++ + FG++ ++ Sbjct: 106 DYKL--DGNTILVPSSEYNTLKLDMVRAGL-NQEKNAGDDILLQDMGFGVSQRLELERLK 162 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEA 190 + E ++++ I+ + + ARV + +P F + +ASV + + K ++ Sbjct: 163 LSRERQLSKAIEEMKQVRKARVLLALPKQSVFVRHNQEASASVFLTLATGANLKQEEVDS 222 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKA 248 + +V++AVP + +TV D G+LL++ + K + + + + I+ Sbjct: 223 VVDMVSSAVPGMKPNRITVTDQHGRLLSSGSQDPASAARRKEHELERKQEQALRDKIDSV 282 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------T 299 L LG N+ + V +L+ + +DP++ RS +D + Sbjct: 283 LIPILGFGNYTAQVDIQLDFSAVEQTRKSFDPNTPSTRSEYTLEDYNNGSVVAGVPGALS 342 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 +QP + ++ Q++ + D S+ KE NYE++T + R ++ Sbjct: 343 NQPPADASIPQDVAQMKDGTGLGQGSV----HKEATRNYELDTTISHERRQTGVVNRQTV 398 Query: 360 AVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 AV + N+ + G + Q D+ L+ I +++ A G + RGD + + SM F E ++ Sbjct: 399 AVAIKNRAIVNPDTGETTYQPLSDADLSSIRQVLIGAVGYSEARGDLLNVLSMQFAEPEV 458 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 V + + +ALV +V L++ A+++L N A + Sbjct: 459 EVLQDVPIWEHPNFNDWVRWFASALVIIVVVLVLV---RPAMKKLLNP--ASDDDDDQLY 513 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 PI + T L+ +D L+ F S +L N + + + ++ Sbjct: 514 GPDGLPIGADGETSLIGSD---LEGGELFEFGSSIDLP---NLHKDEDVLKAVRALVANE 567 Query: 539 EERFAKILRKWARS 552 E A++++ W + Sbjct: 568 PELAAQVVKNWMQD 581 >gi|126176167|ref|YP_001052316.1| flagellar MS-ring protein [Shewanella baltica OS155] gi|304412519|ref|ZP_07394125.1| flagellar M-ring protein FliF [Shewanella baltica OS183] gi|307307178|ref|ZP_07586916.1| flagellar M-ring protein FliF [Shewanella baltica BA175] gi|125999372|gb|ABN63447.1| flagellar M-ring protein FliF [Shewanella baltica OS155] gi|304349161|gb|EFM13573.1| flagellar M-ring protein FliF [Shewanella baltica OS183] gi|306910417|gb|EFN40848.1| flagellar M-ring protein FliF [Shewanella baltica BA175] Length = 558 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 122/526 (23%), Positives = 211/526 (40%), Gaps = 32/526 (6%) Query: 36 FMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARI 95 + + + Y LY E D +++ L ID+R+ N ++ V VG AR+ Sbjct: 52 VIVLMLWTATAGYRPLYGSQENVDTSQVLNVLDAEGIDYRLDANSGAVLVAEEQVGNARM 111 Query: 96 HLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVH 155 LAA+G+ + SG E D + G + FM++ +LEGE+ARTI S+ + AARVH Sbjct: 112 ILAAKGV-KAKVPSGMEALDNT-ALGTSQFMEQAKYRNSLEGELARTIMSLKLVRAARVH 169 Query: 156 IVMPDMGSFRKIGAR-PTASVMIR--AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDS 212 + +P F + PTASVM++ EAI +LVA +V L ++ V+D Sbjct: 170 LAIPKQTLFIRQEPELPTASVMLQLDPNTRLSESQVEAIVNLVAGSVTGLTASNIKVVDQ 229 Query: 213 TGKLLTANEMERNILG----KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM 268 G+ L+ N L K L + +++ + N + L LG +NF+ V A++N Sbjct: 230 DGRYLSENISGNQDLSQSRNKQLQYTRELENSLVANASSMLEPVLGQENFQVRVTAKVNF 289 Query: 269 DTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 + + + DP + V + S S N P + + ++ Sbjct: 290 NQVEETKESLDPQNVV---TQERTSVDDSSNSIAAGIPGALSNKPPQAGKAAADDKTR-- 344 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 K+EE Y++ + +LE LS++V++N ++ LA+ Sbjct: 345 NLKQEESRQYDVGRSVRHVRYQQMQLENLSVSVLINSATSQGAFND-------EAQLAKF 397 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 +V A G ++ RGD+ TI + +F TV F L +++G Sbjct: 398 GNMVKDAIGFSAARGDSFTINAFEFT-------PTVTAEFTPSPWWQSENYQAYLRYIIG 450 Query: 449 TLLVTFLGLHALRRLHN--IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQ 506 +L L L LR L A+ + + + A+ + + Sbjct: 451 GILGFGLILFVLRPLVKHLTRTAQMTAPRIEPVALSAAPAGALDGPVADAASNQPHQLPS 510 Query: 507 DIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 + S+ L + K L L + R A+++ W Sbjct: 511 AEWLGSQGLPEPGSPLTVKMEHLAL--LANKEPARVAEVIAHWIGD 554 >gi|255985845|ref|YP_354394.3| flagellar MS-ring protein [Rhodobacter sphaeroides 2.4.1] gi|77389308|gb|ABA80493.1| putative flagellar M-ring protein [Rhodobacter sphaeroides 2.4.1] Length = 509 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 127/531 (23%), Positives = 224/531 (42%), Gaps = 25/531 (4%) Query: 26 ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISV 85 + + + P LY L+ + AL + + G S+ V Sbjct: 1 MGATVAMFLAVLGLSQLAGRPPMALLYAGLQGPAAGEVVTALEAQGAAYEVR--GDSVYV 58 Query: 86 PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145 ++ + R+ LA +GLP++ + +GYEL D ++ FG TS M + +RA EGE+ARTI + Sbjct: 59 EAARRDEIRMKLAGEGLPATGA-AGYELLDGLSGFGTTSQMFDAAYLRAKEGELARTILA 117 Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS-VYKSAEAIRHLVAAAVPNLDM 204 + AARVHI P FR+ RPTASV + + A A +HLVA+AV L Sbjct: 118 SPQVKAARVHIAQPAAQPFRRE-QRPTASVTVTTSGGAVTADQARAFKHLVASAVAGLQP 176 Query: 205 GDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVA 264 DV+V+DS L+ + + + S E+ N+ + L A +G V Sbjct: 177 EDVSVIDSVMGLIRSGDEKDGATAAGESRA----AELRSNVERLLEARVGPGRAVVEVSV 232 Query: 265 ELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPR 324 ++ + I E +DP +V S + + S +++P VTV N+P + + Sbjct: 233 DVETARESIVEKSFDPKGRVPISSETQEKS--SNSTEPSPDVTVASNLPEGDAKGGTGGK 290 Query: 325 SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY 384 S +T + E N+E++ + RL++AV+V+ + G + + + Sbjct: 291 S--STSETREMVNFEVSQTQRELMRQPGAIRRLTVAVLVDGIKTVADDGTVGWEPRPEEE 348 Query: 385 LAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALV 444 LA + ++V +A G++ RGD +T+ S+ F E + F+ L +++ + Sbjct: 349 LAVLRELVGSAVGLDESRGDRLTLRSLAF-ETPPEAGTLAETGFLSRLGAF--DLMSLIQ 405 Query: 445 FLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSS 504 V L+ LGL +R + ++ A+T + Sbjct: 406 IGVLALVALILGLFVVRPVLTAPPRPPAAPQPLALPGYEGGEPALTGEI---------DD 456 Query: 505 NQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + D+ + ++ RL +IE + +ILR W + E Sbjct: 457 SGDLPDFPMVSSAPLDLDEEADPVARLRRLIEERQAESVEILRGWMEPQRE 507 >gi|127512297|ref|YP_001093494.1| flagellar MS-ring protein [Shewanella loihica PV-4] gi|126637592|gb|ABO23235.1| flagellar M-ring protein FliF [Shewanella loihica PV-4] Length = 565 Score = 340 bits (872), Expect = 4e-91, Method: Composition-based stats. Identities = 104/531 (19%), Positives = 221/531 (41%), Gaps = 30/531 (5%) Query: 37 MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIH 96 + + P Y L K++ ++ ++ L + ++++I + + VP ++ Sbjct: 52 VFVMLWAQEPEYRPL-GKMDTQEMVQVLDVLDKNKVNYQIDVD--VLKVPEDQYQDVKMM 108 Query: 97 LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHI 156 L+ G+ +S S Y K + FG++ M+ + E +ARTI+ + + A+V + Sbjct: 109 LSRAGIDNSPSRDDY--LSKDSGFGVSQRMEAARLKNSQEQNLARTIEELKSVSRAKVIL 166 Query: 157 VMPDMGSFRKIGARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 +P F + ++P+A+V++ + + ++I +VA+AV L+ VTV D+ G+ Sbjct: 167 AIPKENVFARNRSKPSATVVVNTRRGGLGQEEVDSIVDIVASAVHGLEPTRVTVTDANGR 226 Query: 216 LLTANEM--ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI 273 LL + + L +VQ + E I L LG +NF + V ++ + + Sbjct: 227 LLNSGSQTAGSARARRELELVQQKEAEYRSKIESILMPILGPENFTAQVDVNMDFTSVEQ 286 Query: 274 REIVYDPDSKVERSIRLSKDAQRSETSQP-----ESAVTVEQNMPHVSDRKVPLPRSLEN 328 Y+PD RS ++ ++ + +E N+P + ++L Sbjct: 287 TAKRYNPDLPAVRSEMTVENNSTGASTGGIAGALSNQPPMEANIPQQATGTSAQEQTLPG 346 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTE-VLGRSADQGKIDSYLAE 387 + KE NYE++T T + R+S++V V+ G+ + + L+ Sbjct: 347 SSHKEATRNYELDTTISHTRQQVGVVRRVSVSVAVDFKTGPAGEDGQVTRVARTEQELSN 406 Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447 I +++ A G N++RGD I + ++ F++ + + + + R V+ L+ LV Sbjct: 407 IRRLLEGAVGFNTQRGDMIEVVTVPFMDQLVEEAPALAIYEEPWFWRAIKLVMGGLIILV 466 Query: 448 GTLLVTFLGLHALRRLHNIDDAKKGEVG--GKSILSPPPISSAVTTGLM--PNDNIALDS 503 L+ F+ L+RL D K + G + +A T G++ P+ + Sbjct: 467 ---LILFVVRPMLKRLIYPDGQKMPDAPSLGDELAEIEDQYAADTLGMLNRPDAEYSYAD 523 Query: 504 SNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + I + + ++ E ++++ W + Sbjct: 524 DGSILIPDLHKDDDMIKA---------IRALVANEPELSTQVVKGWLQENE 565 >gi|269961618|ref|ZP_06175980.1| flagellar M-ring protein [Vibrio harveyi 1DA3] gi|269833659|gb|EEZ87756.1| flagellar M-ring protein [Vibrio harveyi 1DA3] Length = 580 Score = 340 bits (871), Expect = 4e-91, Method: Composition-based stats. Identities = 99/554 (17%), Positives = 228/554 (41%), Gaps = 36/554 (6%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 L R +L+L+ I V +++ + F+V P L E ++ + L + I Sbjct: 47 GDLDLLRQVVLVLSISICVALIVMLF--FWVKEPEMRPLGA-YETEELIPVLDYLDQQKI 103 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 ++++ +G++ISV SS ++ + G+ + ++ +G ++ + FG++ +++ Sbjct: 104 NYKL--DGNTISVESSDYNSIKLGMVRAGV-NQATAAGDDILLQDMGFGVSQRLEQERLK 160 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEA 190 + E ++A+ I+ + + ARV + +P F + +ASV + + K ++ Sbjct: 161 LSRERQLAQAIEEMKQVRKARVLLALPKHSVFVRHNQEASASVFLTLSTGANLKQQEVDS 220 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKA 248 I +VA+AVP + +TV D G+LL++ + K + ++ + + I+ Sbjct: 221 IVDMVASAVPGMKTSRITVTDQHGRLLSSGSQDPASAARRKEQELERSQEQALREKIDSV 280 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------T 299 L LG N+ + V +++ T + +DP++ RS +D + Sbjct: 281 LLPILGFGNYTAQVDIQMDFSTVEQTRKNFDPNTPATRSEYALEDYNNGNMVAGIPGALS 340 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 +QP + ++ Q++ + D + S+ +KE N+E++T L R ++ Sbjct: 341 NQPPADASIPQDVAQMKDGSLTGQGSV----RKESTRNFELDTTISHERKQTGTLARQTV 396 Query: 360 AVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 +V + ++ + G +S + I +++ G + RGD + + S+ F E +L Sbjct: 397 SVAIKDRRTVNPDTGEVTYTPLSESEINAIRQVLIGTVGFDQNRGDLLNVLSVKFAEPEL 456 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 + + +ALV +V L++ A+++L N + E+ G Sbjct: 457 EQMVDPPIWEHPNFNDWVRWFASALVIIVVILVLV---RPAMKKLLNPASTDEDEMYGPD 513 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 L G + + + + + + + ++ Sbjct: 514 GLPIGADGETSLIGSDIESGELFEFGSSIDLPNLHKDEDVLKA---------VRALVANE 564 Query: 539 EERFAKILRKWARS 552 E A++++ W Sbjct: 565 PELAAQVVKNWMNE 578 >gi|163738046|ref|ZP_02145462.1| flagellar M-ring protein FliF [Phaeobacter gallaeciensis BS107] gi|161388662|gb|EDQ13015.1| flagellar M-ring protein FliF [Phaeobacter gallaeciensis BS107] Length = 561 Score = 340 bits (871), Expect = 5e-91, Method: Composition-based stats. Identities = 151/581 (25%), Positives = 247/581 (42%), Gaps = 48/581 (8%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + Q+ + L + LI ++ I+ +A N+P LY LE + Sbjct: 1 MQQIKNVWAG---LDTRKRLIAVGATVIVILSVLAMSRVANTPTMQLLYAGLESGSAGDV 57 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 AL + ++ + G SI VP++ + R+ LA++GLP++ GYEL D ++ FG T Sbjct: 58 VRALEQRGTEYEVR--GGSIYVPATARDELRMTLASEGLPANGGR-GYELLDSLSGFGTT 114 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN-P 182 S M + RA EGE+ARTI + + ARVHI F++ A PTASV + + P Sbjct: 115 SQMFDAAYWRAKEGELARTIVASPHVTQARVHIANTGSNPFQRT-AEPTASVSVVPMGSP 173 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242 A AIR L+++AV L + +V V+D+ G L+ + E + + Q+ I Sbjct: 174 ITPAQANAIRFLISSAVTGLAVENVAVIDANGALIGSPEAAAAVGAGTDDRSQS----IR 229 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 + + + A +G N V E DT+ IRE DP+S+V S + + A S+ Sbjct: 230 ERVMRLVEARVGHGNAVVEVSVETVTDTESIREKRIDPESRVAISTDVEERADSSQN--Q 287 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 VTV N+P S +T E+ NYEI+ ++RL++AV+ Sbjct: 288 SGEVTVASNIPD--GDAASGDGSKASTSATRERVNYEISETEKEILRGPGAIKRLTVAVL 345 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 +N +T G + + + + L + +++SAA G + RGD IT+ SM+ + Sbjct: 346 LNGVPITTATGETVMEPRSEEELGALRELISAAVGFSEERGDVITLKSME-MPTVEPQGT 404 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482 V S D + ++I + TL LGL +R + + + A +G + Sbjct: 405 VVSASIFDNIYLDAMSLIQMAALALVTL---ILGLFVIRPILS-NQASVPALGAPGGDAM 460 Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ-------------------------- 516 + + G M N N+ D + ++ Q Sbjct: 461 DELPALGGGGFMANPNLGADLALDGEIENNETGQFEPMGGMGMGTGMGMGDMGGMGDMGG 520 Query: 517 SRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIEDR 557 RL MI +E +ILR W E E+R Sbjct: 521 LPALGGGGDNPVDRLRSMIGERQEETVQILRGWL-EENEER 560 >gi|262276395|ref|ZP_06054204.1| flagellar M-ring protein FliF [Grimontia hollisae CIP 101886] gi|262220203|gb|EEY71519.1| flagellar M-ring protein FliF [Grimontia hollisae CIP 101886] Length = 586 Score = 340 bits (871), Expect = 6e-91, Method: Composition-based stats. Identities = 106/566 (18%), Positives = 229/566 (40%), Gaps = 29/566 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 ++++ + + R LIL + + + I L + +V P L E ++ Sbjct: 34 MMERDVTPTGPLGGMDIARQLILVAAVAICISLVVLLFMWVQEPEMRPLGT-YETEELIP 92 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + L + ID+ + +G++I VP+ +++L+ GL +S++ G ++ + FG+ Sbjct: 93 VLDHLDQQKIDYTL--DGNTIRVPAKDYSSIKLNLSRAGL-NSATEEGDDILMQDMGFGV 149 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 + ++ + E ++A I+ I + ARV + MP F + +A+V + Sbjct: 150 SQQLERERLKLSRERQLAAAIEKIRAVSKARVLLAMPKQSVFVRHNQEASATVFLTVRGT 209 Query: 183 SVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQ 238 + ++I +VA+AVP+L VTV D G+LL++ + + K + + + Sbjct: 210 TQLGQEEVDSIVDMVASAVPSLKPSRVTVTDQHGRLLSSGSQDPIASQRRKEYELERKQE 269 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 + I+ L LG+ N+ S V ++ + +DP + RS ++ + Sbjct: 270 QALREKIDAILIPVLGLGNYTSQVDVTMDFSAVEETRKRFDPATPSTRSEYTREN--YNN 327 Query: 299 TSQPESAVTVEQNMPHVSDRKV-------PLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 T N P V + + +E NYE++T Sbjct: 328 TDYVAGVPGALSNQPPVDSSIPEDIQDLRNGGAGDKGSLSREATRNYELDTTISHRRGQT 387 Query: 352 YKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 + R +++V V+ T G D+ L +I +++ G RGD + + + Sbjct: 388 GTIARQTVSVAVDYIASTNPETGEITRTPVSDAELEKIRRLLVGGVGYTENRGDILEVLA 447 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 + F+E ++ + G V + + + + +LV +V L++ A+ +L N Sbjct: 448 VPFVEPEVVSLGDVPIWEHENFNDWVRWLAASLVIIVVVLVLI---RPAMSKLINPTKDD 504 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV---SKQS 527 +G + P L P+D+I L ++ D + S +N + Sbjct: 505 DALLGPNGEMLGPD-----GLPLSPDDDIGLIGADLDGSNTFGMSSSNLNLPDLHKDEDL 559 Query: 528 DLRLLHMIEINEERFAKILRKWARSE 553 + ++ + A++++ W ++ Sbjct: 560 LKAVRALVANEPDLAAQVVKSWVSND 585 >gi|117928049|ref|YP_872600.1| flagellar M-ring protein FliF [Acidothermus cellulolyticus 11B] gi|117648512|gb|ABK52614.1| flagellar M-ring protein FliF [Acidothermus cellulolyticus 11B] Length = 533 Score = 339 bits (870), Expect = 7e-91, Method: Composition-based stats. Identities = 129/557 (23%), Positives = 233/557 (41%), Gaps = 38/557 (6%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 AILD++ F T+ + ++ A ++L ++ + R + P Y L+ L SD Sbjct: 5 AILDRIRAVFGEFTAGQK---MVTALIVLALVIGAVLFRSWAAKPSYAPLFSNLAASDAA 61 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I+ L+ +R++D GS+I VP V + R+ +A LP +SS SG+ L DK Sbjct: 62 AITDKLNSLKEPYRLADGGSTILVPQKDVYQLRLDMAKANLP-ASSQSGFSLLDK-GGIT 119 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 + F Q + +ALE E+A+TI++I+G+ +A V+IV+P F + ++PTASV++ Sbjct: 120 TSEFQQNVAYQQALESELAKTIEAINGVQSAIVNIVLPQTDVFTQDSSKPTASVLVTTQP 179 Query: 182 PSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK---SLSIVQA 236 S + +AI HLVA++V L+ DVTV DS G +L+A M+ + A Sbjct: 180 SSTLTPEQVQAIVHLVASSVEGLNPADVTVADSQGHVLSAPGMDGQLSAASTLQDQQTAA 239 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD-AQ 295 + + + L +G + V A LN DT+ Y S I LS+ + Sbjct: 240 YEQRVAQAVQNLLQPLVGPGHVVVQVNAALNFDTKSTTSETYLQPSPGTTPIPLSQSWSY 299 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 + + ++A + P P + ++ + I +E Sbjct: 300 ETYSGTNQAATGILGPDNIAVPTPSPSPGTYQSQS---ATVDNAIGRVVEEVKTAPGSVE 356 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 RLS+AV+++ V L ++ +V++A G+ + RGD++++ +M F Sbjct: 357 RLSVAVLLDSAAAKNVN------------LTDVKNLVTSAAGVQTSRGDSVSVATMPFDT 404 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 +Q + S ++ V L+V + LRR + Sbjct: 405 SQQAAEKKALAAAQKAQS--MNKLVGYAKDAVIALIVLGIIFFFLRRAKKAAEVSPILSL 462 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 + + A G D + + + R+ ++ + ++ Sbjct: 463 AERVELEEARRRAALGG--------GDGAERKEIPSGQKPADRLEITTPLAAE--IGELV 512 Query: 536 EINEERFAKILRKWARS 552 E E A++LR W Sbjct: 513 ERQPEEVAQLLRGWLAD 529 >gi|222824351|ref|YP_002575925.1| flagellar MS-ring protein FliF [Campylobacter lari RM2100] gi|222539572|gb|ACM64673.1| flagellar MS-ring protein FliF [Campylobacter lari RM2100] Length = 561 Score = 339 bits (870), Expect = 7e-91, Method: Composition-based stats. Identities = 132/566 (23%), Positives = 233/566 (41%), Gaps = 29/566 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPI-----MLFMAARFFVNSPHYDNLYVKLEV 57 IL Q+ Q +++ + R RI+I AS+++V LF + + Y L+ Sbjct: 6 ILHQVGQLYQNLS--LRQRIIIAASIVVVVGFLVFLTLFRSGSTVASEAGYSVLFENANT 63 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 SD I L ++ + + + + G +I VP+ V K R+ +A+ GL + G+ELFDK Sbjct: 64 SDSAMIVTQLEKSGVPYILRNEG-TILVPNDQVYKQRLAIASAGLLPKDNKVGFELFDKQ 122 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 FG T Q++ RALEGE+ARTI+S+ I +A VHI F + PTASV + Sbjct: 123 E-FGATEAEQKVKYQRALEGELARTIESLEPIHSATVHIAFAKDTLFTQQQVPPTASVAL 181 Query: 178 RAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIV 234 K I++L+A++V L +V ++D G L E +++ + Sbjct: 182 TIKEGLKLNKKQIMGIKNLIASSVTKLTPENVKIMDQKGIPLDDEGAFESDLIAAQIKYK 241 Query: 235 QAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293 + ++E+E I ++A F G D + V + + ++ + VYDP++ V L + Sbjct: 242 RDQEYELEQKIVASIALFAGGYDRVVAKVSIDYDFSKEESQSEVYDPNTVVRSEQTLEEH 301 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 + + + + N+ V R E K + +N EI+ K TT Sbjct: 302 KEGYKDKEIQGVPGAVSNIGPVEGLDDKGAR--EVYTKNQTTTNNEISKKITNTTKQFAT 359 Query: 354 LERLSIAVVVNKGR--LTEVLGRSADQ--GKIDSYLAEINKIVSAATGINSRRGDTITIT 409 ++R+S AVVV+ +T+ G ++ D + I + A G N RGD + + Sbjct: 360 IKRISAAVVVDGKYKVITDDQGNITNEYMPLSDKEIQAIENLTKGAIGFNLARGDAVEVN 419 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 +++F V+ SR I + ++ +L+ + A Sbjct: 420 NLEFHRTA-----KVENKVQTFYSRFVEPFIPPVKYVFAAILLFIFYKKVIVPFSQKMLA 474 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 I A + N A + + + + V + Sbjct: 475 DIKLEEEMEGKDGQIIDEAED--AIEKFNAARRKVEEQLGFGDNFDEDALQYDVLLE--- 529 Query: 530 RLLHMIEINEERFAKILRKWARSEIE 555 +L + E A +L+K +E E Sbjct: 530 KLRAVANEKGEEVALLLQKLVENEAE 555 >gi|153834153|ref|ZP_01986820.1| flagellar M-ring protein FliF [Vibrio harveyi HY01] gi|148869523|gb|EDL68521.1| flagellar M-ring protein FliF [Vibrio harveyi HY01] Length = 580 Score = 339 bits (870), Expect = 7e-91, Method: Composition-based stats. Identities = 99/554 (17%), Positives = 228/554 (41%), Gaps = 36/554 (6%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 L R +L+L+ I V +++ + F+V P L E ++ + L + I Sbjct: 47 GDLDLLRQVVLVLSISICVALIVMLF--FWVKEPEMRPLGA-YETEELIPVLDYLDQQKI 103 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 ++++ +G++ISV SS ++ + G+ + ++ +G ++ + FG++ +++ Sbjct: 104 NYKL--DGNTISVESSDYNSIKLGMVRAGV-NQATAAGDDILLQDMGFGVSQRLEQERLK 160 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEA 190 + E ++A+ I+ + + ARV + +P F + +ASV + + K ++ Sbjct: 161 LSRERQLAQAIEEMKQVRKARVLLALPKHSVFVRHNQEASASVFLTLSTGANLKQQEVDS 220 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKA 248 I +VA+AVP + +TV D G+LL++ + K + ++ + + I+ Sbjct: 221 IVDMVASAVPGMKTSRITVTDQHGRLLSSGSQDPASAARRKEQELERSQEQALREKIDSV 280 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------T 299 L LG N+ + V +++ T + +DP++ RS +D + Sbjct: 281 LLPILGFGNYTAQVDIQMDFSTVEQTRKNFDPNTPSTRSEYALEDYNNGNMVAGIPGALS 340 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 +QP + ++ Q++ + D + S+ +KE N+E++T L R ++ Sbjct: 341 NQPPADASIPQDVAQMKDGTLTGQGSV----RKESTRNFELDTTISHERKQTGTLARQTV 396 Query: 360 AVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 +V + ++ + G +S + I +++ G + RGD + + S+ F E +L Sbjct: 397 SVAIKDRRTVNPDTGEVTYTPLSESEINAIRQVLIGTVGFDENRGDLLNVLSVKFAEPEL 456 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 + + +ALV +V L++ A+++L N + E+ G Sbjct: 457 EQMVDPPIWEHPNFNDWVRWFASALVIIVVILVLV---RPAMKKLLNPASGDEDEMYGPD 513 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 L G + + + + + + + ++ Sbjct: 514 GLPIGADGETSLIGSDIESGELFEFGSSIDLPNLHKDEDVLKA---------VRALVANE 564 Query: 539 EERFAKILRKWARS 552 E A++++ W Sbjct: 565 PELAAQVVKNWMNE 578 >gi|308048752|ref|YP_003912318.1| flagellar M-ring protein FliF [Ferrimonas balearica DSM 9799] gi|307630942|gb|ADN75244.1| flagellar M-ring protein FliF [Ferrimonas balearica DSM 9799] Length = 583 Score = 339 bits (869), Expect = 8e-91, Method: Composition-based stats. Identities = 95/554 (17%), Positives = 212/554 (38%), Gaps = 25/554 (4%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 S ++ R + L + + + + + + P Y L ++E ++ L + Sbjct: 43 LSSFGNIDVLRQISLILALAISLAIAVFLIIWAQEPSYRPL-GQMETQELIDTLDFLDQQ 101 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 + +++ NG++ISVP R+ L GL + + + + FG++ M++ Sbjct: 102 KLPYQL--NGNTISVPEDRFADIRLMLTRNGLGPARPQQ--DFLTQDSGFGVSQRMEQAR 157 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--A 188 + E +A ++ + + ARV + +P F + P+A+V++ + + Sbjct: 158 LKHSQEQTLASAVEELRSVQRARVILALPQQNVFARQQREPSATVVVTLNRGTELRQSEV 217 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNIN 246 +A+ +VA+AV L VTV D G+LL + + + L + + I+ Sbjct: 218 DAVVDIVASAVHGLKPARVTVTDQHGRLLNSGSQDGISAQARRELELRIQQEQLYREKID 277 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306 L LG+ + + V ++ + Y+PD RS L +D Q S P Sbjct: 278 SILIPVLGIGRYSAQVDVTMDFSAVEETSRRYNPDMPAVRSEMLIEDNQSG--SGPVGIP 335 Query: 307 TVEQNMPHVSD-------RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 N P ++ R ++ E N+E+++ T + R+++ Sbjct: 336 GALTNQPPIASEIPQQVEGAGQDERLASGRNRSEVTRNFELDSTISHTRQQVGTVRRVTL 395 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 +V V+ + G + ++ LA I +++ + G N+ RGD + + S+ F ++ Sbjct: 396 SVAVDHKPVAGADGATTMAPLSETELASIRRLLMGSVGFNAARGDVLEVVSVPFADDLAL 455 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + + R V +L L +L + ++RL N ++ K E Sbjct: 456 EPLNIPIYEQGWFWR---AVKWSLGALGLLVLFLVVVRPMVKRLLNPNEGKATEGA---- 508 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 P + + + L++ + D + + + ++ Sbjct: 509 TGPGGDLAELEDQYAADTLGLLNTGDSDYSYAEDGSILLPDLHKDDDMLRAIRALVANEP 568 Query: 540 ERFAKILRKWARSE 553 + ++++ W + Sbjct: 569 DLSTQVIKSWLNED 582 >gi|156975431|ref|YP_001446338.1| flagellar MS-ring protein [Vibrio harveyi ATCC BAA-1116] gi|156527025|gb|ABU72111.1| hypothetical protein VIBHAR_03162 [Vibrio harveyi ATCC BAA-1116] Length = 580 Score = 338 bits (868), Expect = 1e-90, Method: Composition-based stats. Identities = 99/554 (17%), Positives = 228/554 (41%), Gaps = 36/554 (6%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 L R +L+L+ I V +++ + F+V P L E ++ + L + I Sbjct: 47 GDLDLLRQVVLVLSISICVALIVMLF--FWVKEPEMRPLGA-YETEELIPVLDYLDQQKI 103 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 ++++ +G++ISV SS ++ + G+ + ++ +G ++ + FG++ +++ Sbjct: 104 NYKL--DGNTISVESSDYNSIKLGMVRAGV-NQATAAGDDILLQDMGFGVSQRLEQERLK 160 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEA 190 + E ++A+ I+ + + ARV + +P F + +ASV + + K ++ Sbjct: 161 LSRERQLAQAIEEMKQVRKARVLLALPKHSVFVRHNQEASASVFLTLSTGANLKQQEVDS 220 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKA 248 I +VA+AVP + +TV D G+LL++ + K + ++ + + I+ Sbjct: 221 IVDMVASAVPGMKTSRITVTDQHGRLLSSGSQDPASAARRKEQELERSQEQALREKIDSV 280 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------T 299 L LG N+ + V +++ T + +DP++ RS +D + Sbjct: 281 LLPILGFGNYTAQVDIQMDFSTVEQTRKNFDPNTPSTRSEYALEDYNNGNMVAGIPGALS 340 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 +QP + ++ Q++ + D + S+ +KE N+E++T L R ++ Sbjct: 341 NQPPADASIPQDVAQMKDGTLTGQGSV----RKESTRNFELDTTISHERKQTGTLARQTV 396 Query: 360 AVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 +V + ++ + G +S + I +++ G + RGD + + S+ F E +L Sbjct: 397 SVAIKDRRTVNPDTGEVTYTPLSESEINAIRQVLIGTVGFDENRGDLLNVLSVKFAEPEL 456 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 + + +ALV +V L++ A+++L N + E+ G Sbjct: 457 EQMVDPPIWEHPNFNDWVRWFASALVIIVVILVLV---RPAMKKLLNPASGDEDEMYGPD 513 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 L G + + + + + + + ++ Sbjct: 514 GLPIGADGETSLIGSDIESGELFEFGSSIDLPNLHKDEDVLKA---------VRALVANE 564 Query: 539 EERFAKILRKWARS 552 E A++++ W Sbjct: 565 PELAAQVVKNWMDE 578 >gi|315126013|ref|YP_004068016.1| flagellar MS-ring protein FliF [Pseudoalteromonas sp. SM9913] gi|315014527|gb|ADT67865.1| flagellar MS-ring protein FliF [Pseudoalteromonas sp. SM9913] Length = 575 Score = 338 bits (868), Expect = 1e-90, Method: Composition-based stats. Identities = 130/562 (23%), Positives = 241/562 (42%), Gaps = 44/562 (7%) Query: 21 RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80 R + +++ + + + ++ +Y LY E D I L + I FRI + Sbjct: 35 RSVATIALLATLVAATIVLILWTSAKNYVPLYGNQESYDKANILEILDKEQITFRIDTDS 94 Query: 81 SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140 +I VP + ARI LAA+G+ +S G E S G + F++ + ALEGE+A Sbjct: 95 GNILVPQEKLADARITLAARGI-KASMPEGIENISDKVSMGTSQFIESMQYQHALEGELA 153 Query: 141 RTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRAINPSVYK--SAEAIRHLVAA 197 RTI ++ GI ARVH+ +P F + + ASVM+ K EAI L+ Sbjct: 154 RTIINMQGIRNARVHLAVPKRSLFVGRTEQKTAASVMVDLAPGHELKPEQVEAIIALIIG 213 Query: 198 AVPNLDMGDVTVLDSTGKLLTANEMERNILGKS----LSIVQAIQHEIEMNINKALAAFL 253 +VP LD V+V+D GKLL+ + + +GK L+ ++ ++ IE + L L Sbjct: 214 SVPGLDSRSVSVVDQRGKLLSGDLFDTTPVGKETDKKLAFIEKVERNIEQRASIMLLPIL 273 Query: 254 GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQ--- 310 G NFR V ++++ + + DP + L+++ +S+++ + A + Sbjct: 274 GEGNFRIQVSSDVDFSVVEETREMVDPQNV------LTQEFIKSDSTLDQLAAGIPGSLA 327 Query: 311 NMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTE 370 N P V + + + + + E + +E T + +++ +S++V++N+ Sbjct: 328 NEPPVPNEQAEDENNERTSQRSESKRQFENGRSVTHTQFEVGRIKNMSLSVLINEQVAGT 387 Query: 371 VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMD 430 G + LA + ++V ATG N RGD ITS F+E ++ G + Sbjct: 388 ADG------WSEEKLASLGEMVKKATGFNDARGDQFNITSFAFVEQKILAPGEGLEWW-- 439 Query: 431 ILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP----PPIS 486 + ++VGTL+ L L +R L N K ++ + +S Sbjct: 440 ----QMPELKEYARYIVGTLISLLLILFGVRPLVNHLIKGKSNDANNAMATTDNEVKSVS 495 Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR-------INSYVSKQSDLRLLHMIEINE 539 + ++ I S +++ + + + N + + + ++L + Sbjct: 496 ATERQSSPLDEAINAKSQIENLTAKEGASEHQNMSLPQIGNDFEEQIAHMQL--LANKET 553 Query: 540 ERFAKILRKWARS--EIEDRYT 559 ER +++ W EIE R Sbjct: 554 ERVTSVIKYWVEQGVEIESRKA 575 >gi|163742558|ref|ZP_02149944.1| flagellar M-ring protein FliF [Phaeobacter gallaeciensis 2.10] gi|161384143|gb|EDQ08526.1| flagellar M-ring protein FliF [Phaeobacter gallaeciensis 2.10] Length = 574 Score = 338 bits (868), Expect = 1e-90, Method: Composition-based stats. Identities = 151/581 (25%), Positives = 247/581 (42%), Gaps = 48/581 (8%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + Q+ + L + LI ++ I+ +A N+P LY LE + Sbjct: 14 VQQIKNVWAG---LDTRKRLIAVGATVIVILSVLAMSRVANTPTMQLLYAGLESGSAGDV 70 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 AL + ++ + G SI VP++ + R+ LA++GLP++ GYEL D ++ FG T Sbjct: 71 VRALEQRGTEYEVR--GGSIYVPATARDELRMTLASEGLPANGGR-GYELLDSLSGFGTT 127 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN-P 182 S M + RA EGE+ARTI + + ARVHI F++ A PTASV + + P Sbjct: 128 SQMFDAAYWRAKEGELARTIVASPHVTQARVHIANTGSNPFQRT-AEPTASVSVVPMGSP 186 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242 A AIR L+++AV L + +V V+D+ G L+ + E + + Q+ I Sbjct: 187 ITPAQANAIRFLISSAVTGLAVENVAVIDANGALIGSPEAAAAVGAGTDDRSQS----IR 242 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 + + + A +G N V E DT+ IRE DP+S+V S + + A S+ Sbjct: 243 ERVMRLVEARVGHGNAVVEVSVETVTDTESIREKRIDPESRVAISTDVEERADSSQN--Q 300 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 VTV N+P S +T E+ NYEI+ ++RL++AV+ Sbjct: 301 SGEVTVASNIPD--GDAASGDGSKASTSATRERVNYEISETEKEILRGPGAIKRLTVAVL 358 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 +N +T G + + + + L + +++SAA G + RGD IT+ SM+ + Sbjct: 359 LNGVPITTATGETVMEPRSEEELGALRELISAAVGFSEERGDVITLKSME-MPTVEPQGT 417 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482 V S D + ++I + TL LGL +R + + + A +G + Sbjct: 418 VVSASIFDNIYLDAMSLIQMAALALVTL---ILGLFVIRPILS-NQASVPALGAPGGDAM 473 Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ-------------------------- 516 + + G M N N+ D + ++ Q Sbjct: 474 DELPALGGGGFMANPNLGADLALDGEIENNETGQFEPMGGMGMGTGMGMGDMGGMGDMGG 533 Query: 517 SRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIEDR 557 RL MI +E +ILR W E E+R Sbjct: 534 LPALGGGGDNPVDRLRSMIGERQEETVQILRGWL-EENEER 573 >gi|254466479|ref|ZP_05079890.1| flagellar M-ring protein FliF [Rhodobacterales bacterium Y4I] gi|206687387|gb|EDZ47869.1| flagellar M-ring protein FliF [Rhodobacterales bacterium Y4I] Length = 556 Score = 338 bits (867), Expect = 1e-90, Method: Composition-based stats. Identities = 146/570 (25%), Positives = 243/570 (42%), Gaps = 34/570 (5%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + Q+ + + + LI ++ I+ +A + P LY LE + Sbjct: 1 MQQIKNVWA---EMDMRKRLIAVGATVIMILSVIAMSHVASKPSMTLLYAGLESGSAGDV 57 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 AL + + + GSSI VPS+ + R+ LA++GLP++ GYEL D ++ FG T Sbjct: 58 VRALEQRGTQYEVR--GSSIYVPSTQRDELRMTLASEGLPANGGK-GYELLDSLSGFGTT 114 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN-P 182 S M + RA EGE+ARTI + + ARVHI + F++ PTASV I + P Sbjct: 115 SQMFDAAYWRAKEGELARTIVASPHVSQARVHIANTGLNPFQRT-VEPTASVSIVPMGSP 173 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242 A AIR LV++AV L + +V V+D+ G L+ +++ + Q I Sbjct: 174 ITPAQANAIRFLVSSAVTGLAVENVAVIDANGALIGSSDATAAAGAGTDDRSQT----IR 229 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 + + + A +G N V E DT+ IRE + DP S+V S + + A S Sbjct: 230 ERVMRLVEARVGQGNAVVEVSVETVTDTESIREKLIDPKSRVAVSTDVEERADSSTN--Q 287 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 VTV N+P S NT E+ NYEI+ ++RL++AV+ Sbjct: 288 AGEVTVASNIPD--GDAASGQGSKANTSATRERINYEISETEKEILRGPGAIKRLTVAVL 345 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 +N +T G + Q + + LA + +++SAA G ++ RGD IT+ SM+ L Sbjct: 346 INGTAVTNDAGETVFQPRPEDELAAMRELISAAVGFDAERGDVITLKSME-LPAVEPQGT 404 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR-----RLHNIDDAKKGEVGGK 477 SF D L +++ + +L++ + + + + G++ G Sbjct: 405 VATASFFDNLYFDAMSLVQIGALALVSLILGLFVVRPILSNQATPVAALPSPGGGDLPGL 464 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV------------SK 525 + +A G + ++++ F L + + Sbjct: 465 PGIGGGGFMTAPDLGAGLALDGEIENNETGQFEPLGGLPAMGTGDMMGAIGLPAMGGGMD 524 Query: 526 QSDLRLLHMIEINEERFAKILRKWARSEIE 555 RL +MI +E +ILR W E Sbjct: 525 DPVDRLRNMIGERQEETVQILRGWLEENRE 554 >gi|257484920|ref|ZP_05638961.1| flagellar MS-ring protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 447 Score = 338 bits (867), Expect = 2e-90, Method: Composition-based stats. Identities = 105/424 (24%), Positives = 178/424 (41%), Gaps = 39/424 (9%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y LY L D +I L Sbjct: 24 LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + ANI++ + N ++ V S V +ARI LA G+ + +N G+E+ DK G + FM+ Sbjct: 84 TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 R LEGE+ARTI +++ + ARVH+ +P F + +P+ASV++ + Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEM 243 AI +LVA +VP L +TV+D G LL+ A E + GK + ++ + Sbjct: 204 SQVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE----- 298 + L LG D +++ V A ++ + ++PD RS + + + S Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNEQRSSSSSTGG 323 Query: 299 -----TSQPESAVTVEQNM----------------------PHVSDRKVPLPRSLENTDK 331 ++QP T QN + D P Sbjct: 324 VPGALSNQPPGPATAPQNATAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPAD 383 Query: 332 K--EEQSNYEINTKSIATTHDNYKLERLSIAVVVNK-GRLTEVLGRSADQGKIDSYLAEI 388 K + N+E++ T +L RLS+AVVV+ + G + LA Sbjct: 384 KRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAADLARF 443 Query: 389 NKIV 392 ++V Sbjct: 444 TRLV 447 >gi|121586818|ref|ZP_01676600.1| flagellar M-ring protein FliF [Vibrio cholerae 2740-80] gi|153213259|ref|ZP_01948671.1| flagellar M-ring protein FliF [Vibrio cholerae 1587] gi|153825593|ref|ZP_01978260.1| flagellar M-ring protein FliF [Vibrio cholerae MZO-2] gi|153828635|ref|ZP_01981302.1| flagellar M-ring protein FliF [Vibrio cholerae 623-39] gi|229528855|ref|ZP_04418245.1| flagellar M-ring protein FliF [Vibrio cholerae 12129(1)] gi|262191383|ref|ZP_06049573.1| flagellar M-ring protein FliF [Vibrio cholerae CT 5369-93] gi|297582031|ref|ZP_06943950.1| flagellar M-ring protein FliF [Vibrio cholerae RC385] gi|121548985|gb|EAX59024.1| flagellar M-ring protein FliF [Vibrio cholerae 2740-80] gi|124116059|gb|EAY34879.1| flagellar M-ring protein FliF [Vibrio cholerae 1587] gi|148875906|gb|EDL74041.1| flagellar M-ring protein FliF [Vibrio cholerae 623-39] gi|149740744|gb|EDM54843.1| flagellar M-ring protein FliF [Vibrio cholerae MZO-2] gi|229332629|gb|EEN98115.1| flagellar M-ring protein FliF [Vibrio cholerae 12129(1)] gi|262032758|gb|EEY51306.1| flagellar M-ring protein FliF [Vibrio cholerae CT 5369-93] gi|297533726|gb|EFH72568.1| flagellar M-ring protein FliF [Vibrio cholerae RC385] gi|327484662|gb|AEA79069.1| Flagellar M-ring protein FliF [Vibrio cholerae LMA3894-4] Length = 580 Score = 338 bits (866), Expect = 2e-90, Method: Composition-based stats. Identities = 113/559 (20%), Positives = 235/559 (42%), Gaps = 36/559 (6%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 + F L R +L+L+ I V +++ + F+V P L E ++ + L Sbjct: 43 MDFTVGDLDLLRQVVLVLSISICVALIVMLF--FWVREPDMRPLGA-YETEELIPVLDYL 99 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + +++ +G++I VP S ++ + GL + + +G E+ + FG++ ++ Sbjct: 100 DQQKQQYKL--DGNTILVPVSDYNSLKLSMVRAGL-NQNRQAGDEILMQDMGFGVSQRLE 156 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187 + + E ++A+ I+ + + ARV + +P F + +ASV + + K Sbjct: 157 QERLKLSRERQLAKAIEEMRQVNKARVLLALPKQSVFVRHNQEASASVFLTVRTGANLKQ 216 Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE--IEM 243 +A+ +VA+AVP + VTV D G+LL++ + + Q E + Sbjct: 217 EEIDAVVDMVASAVPGMKPSRVTVTDQHGRLLSSGSQDPVSAARRKEQELEKQQEEALRG 276 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE----- 298 I+ L LG+ N+ + V EL+ + V+DP++ RS +D Sbjct: 277 KIDSVLIPILGLGNYTAQVDIELDFSAVEQTRKVFDPNTPATRSEYTLEDYNNGNVVAGV 336 Query: 299 ----TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 ++QP + ++ Q++ + D V S+ KE NYE++T + + Sbjct: 337 PGALSNQPPADASIPQDVAQMKDGSVMGQGSV----HKEATRNYELDTTISHERKQSGVI 392 Query: 355 ERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 R ++AV V ++ + G ++ L I +++ G + RGD + + SM F Sbjct: 393 NRQTVAVAVKSRSSVNPDTGEVTYTPLSEADLNSIRQVLIGTVGYSENRGDLLNVLSMPF 452 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 E ++ V + + +ALV ++ L++ A+++L N + Sbjct: 453 AEPEMEQIVDVPIWEHPNFNDWVRWFASALVIIIVILVLV---RPAMKKLINPAADDDDQ 509 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 + G PI + T L+ +D +D F +L N + + + Sbjct: 510 MYGP---DGMPIGADGETSLIGSD---IDGGELFEFGSGIDLP---NLHKDEDVLKAVRA 560 Query: 534 MIEINEERFAKILRKWARS 552 ++ E A++++ W ++ Sbjct: 561 LVANEPELAAQVVKNWMQN 579 >gi|90579927|ref|ZP_01235735.1| flagellar M-ring protein [Vibrio angustum S14] gi|90438812|gb|EAS63995.1| flagellar M-ring protein [Vibrio angustum S14] Length = 582 Score = 338 bits (866), Expect = 2e-90, Method: Composition-based stats. Identities = 101/553 (18%), Positives = 216/553 (39%), Gaps = 29/553 (5%) Query: 14 GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73 +L R +IL + + + L + ++ P L E ++ I + I+ Sbjct: 45 LGNLDLLRQVILVLSVAICVALIVLVTMWIKEPEMRPLGT-YETEELIPILDHFDQKKIE 103 Query: 74 FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 +++ +G++I VP+ ++ L GL ++ + G ++ + FG++ M+ Sbjct: 104 YQL--DGNTIRVPADEYSAIKLDLTRTGL-NAQTAEGDDILLQDMGFGVSQRMESERLKL 160 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEAI 191 + E ++AR I+ IS + A+V + P F + TA+V + + ++I Sbjct: 161 SRERQLARAIEQISQVRKAQVLLATPKQSVFVRHNQEATATVFLTLSSGGSLGQQEVDSI 220 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKAL 249 +VA AVP L VTV D G+LL++ + + K + + + + I+ L Sbjct: 221 VDMVATAVPGLRPTRVTVTDQHGRLLSSGTEDPSTTAKRKEYELERKQEQALREKIDAIL 280 Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309 LG+ N+ S V ++ + YDP + RS +D +Q Sbjct: 281 MPVLGLGNYTSQVDVAMDFSALEETRKRYDPSTAATRSEFTLEDINGG--NQVAGIPGAL 338 Query: 310 QNMPHVSDRKV-------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 N P V + + +E NYE++T ++R +++V Sbjct: 339 SNQPPVESAIPQNVKDMQSGTNGSDGSVHRESTRNYELDTTISHKRAQTGVIDRQTVSVA 398 Query: 363 VNKGRLTEV-LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 V+ +T+ G ++ +A+I +++ G + RGD + + S+ F+ + + Sbjct: 399 VDYKTITDPKTGDVTRVPVSEAEIAKIRRLLMGGIGFSEARGDLLEVLSVPFVLPESQLA 458 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR-RLHNIDDAKKGEVGGKSIL 480 + + S + ALV +V +++ + L D E G + Sbjct: 459 ADLPIWENPNFSSWVRWIAAALVIIVVIMVLVRPAMRKLLYPNQAPDGTPLDENGMPVMA 518 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 + + L + L SS+ D+ N + + + +++ + Sbjct: 519 NSADSVGLIGAELDGGEGFELSSSSLDLP----------NLHKDEDLLKAVRALVDNEPD 568 Query: 541 RFAKILRKWARSE 553 A++++ W + Sbjct: 569 LAAQVVKSWVNED 581 >gi|223038711|ref|ZP_03609004.1| flagellar M-ring protein FliF [Campylobacter rectus RM3267] gi|222880113|gb|EEF15201.1| flagellar M-ring protein FliF [Campylobacter rectus RM3267] Length = 564 Score = 338 bits (866), Expect = 2e-90, Method: Composition-based stats. Identities = 122/568 (21%), Positives = 228/568 (40%), Gaps = 39/568 (6%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH----YDNLYVKLE 56 M + Q + +L + L+ A I++ + + + +S Y L+ Sbjct: 1 MDFKTAVQQIGQVYHNLSLRQRLVAAGSIVLVVGFLVFLSIYKSSNEGYDGYSVLFENTS 60 Query: 57 VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 +D I L + + ++I + G +I VP+S V + RI +A+ G+ G+E+FDK Sbjct: 61 AADSALIIQQLEKDKVKYKILNEG-TILVPNSDVYRERISIASLGILKDGK-VGFEIFDK 118 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 FG T Q++ RALEGE+ARTI+S++ I A V I +P F + P+AS++ Sbjct: 119 QE-FGATDAEQKVKFQRALEGELARTIESLAPINKAIVRIAIPKETLFTERATPPSASIV 177 Query: 177 IRAINPSV--YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLS 232 + + K I++LVAAAV NL V ++ G L + E + + + + Sbjct: 178 LNLKDGQSLNLKQIAGIKNLVAAAVANLKPEQVKIVSQDGVPLGEEDGEYDSDQITQQIR 237 Query: 233 IVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + +H +E I L+ + G D + V + + + + +DP+S + Sbjct: 238 YKRDAEHNLEEKIINVLSPIVGGADKVVAKVTIDFDFARKDSQSESFDPNSVARSEQNIE 297 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + Q S+ ++ + N+ V + + E K +NYEI+ K Sbjct: 298 EKRQGSKEAEVQGVPGAVSNIGPVEGLQD--NKMKELYSKSSSTTNYEISKKVERVKDQF 355 Query: 352 YKLERLSIAVVVNKGRLT------EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 K++RLS AVVV+ A ++ LA I+ ++ A + RGD Sbjct: 356 AKIKRLSAAVVVDGKYENKKDENGNPTKEIAYVPLDENQLARIDALIRQAICFDQNRGDE 415 Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465 IT+++ +F + SF ++ + + L +L +L+ + Sbjct: 416 ITVSNFEFQRQDGQTPASKVNSFFEL---YVVPFLPILKYLFAAVLLYIFYKKVIVPFMA 472 Query: 466 IDDAKKGEVGGKSILSPPPISSA-------------VTTGLMPNDNIALDSSNQDIFSHS 512 E + S + + V L DN D D+ Sbjct: 473 KMLEDIKEEEPELPDSDDQLGDSEDTLEKFQAARKKVEEQLGIGDNFNEDDLRYDVLLEK 532 Query: 513 RNLQSRINSYVSKQSDLRLLHMIEINEE 540 L ++ S + + L +++ + + Sbjct: 533 MKLIAQ---ERSDEIAVLLQDLVKNDSD 557 >gi|42524763|ref|NP_970143.1| flagellar M-ring protein [Bdellovibrio bacteriovorus HD100] gi|39576973|emb|CAE78202.1| flagellar M-ring protein [Bdellovibrio bacteriovorus HD100] Length = 549 Score = 338 bits (866), Expect = 2e-90, Method: Composition-based stats. Identities = 122/553 (22%), Positives = 229/553 (41%), Gaps = 27/553 (4%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 Q +FFK+ LG T+ L + +V ++ + F + Y L+ + V+ I Sbjct: 11 QFREFFKN---LGPTKRLSVIAVTVIAAVALFTMLFMASGKDYVPLFTNIPTEQVSTIVG 67 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ-GLPSSSSNSGYELFDKVNSFGLTS 124 L+E N+ F++ D G +I++P ++ ++ L ++ G P S G E+FDK FG+ S Sbjct: 68 KLNEKNVPFQLRDGGKTIAIPKELLHSTQMTLMSEIGSPKMGS-IGLEIFDK-QDFGMNS 125 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP-- 182 + Q+I RAL+GE+ R I +++ + ++V + +P+ +F + G + +ASV++ Sbjct: 126 YAQKINYQRALQGELMRAINTLTAVKQSKVILALPNKKTFLEEGGQASASVVVELHQGKE 185 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQAIQHEI 241 + +R+LVA +V +D VTVLD GK+LT + + L + I+ ++ Sbjct: 186 LTPEQVRGVRYLVANSVEGMDADKVTVLDERGKVLTRVADGTTGGSNELLDLKAKIEGDL 245 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 E I L +G + V A LN E DPD RS + +++ + Sbjct: 246 EDRIEDILTKVVGHAKVVAKVDATLNHRVISSVEESVDPDKTAIRSQQSEEESLDGSRTN 305 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 P N+P D+ R ++ K+ + +NY++ LER+S+AV Sbjct: 306 PAGVPGSRSNLPGAEDQGTVGFR--QDVKKEIKTTNYDVPKTVRNIRESAGNLERVSVAV 363 Query: 362 VVNK----GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 VV+ + + + + L + +V A G N+ RGD++ I ++ F Sbjct: 364 VVDGMMTTTTKADGTTETTWKPRSAEELRKYEDLVKNAIGFNTARGDSVKIENIQFQPED 423 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 + + + + + + L F+ + + E Sbjct: 424 FSEAEKILTTLE--RKKLIHALFKWALLGFSLALFFFIVVRPFMQWITDSFQDSVEEMLP 481 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 + +V +P + AL + I S+ R+L + Sbjct: 482 RTIEELEELQSVDN-TLPGMSTALPVLQESIDPEK---------AESELLKDRILSSMSR 531 Query: 538 NEERFAKILRKWA 550 +EE+ A W Sbjct: 532 DEEKAANAFGMWL 544 >gi|262404479|ref|ZP_06081034.1| flagellar M-ring protein FliF [Vibrio sp. RC586] gi|262349511|gb|EEY98649.1| flagellar M-ring protein FliF [Vibrio sp. RC586] Length = 580 Score = 338 bits (866), Expect = 2e-90, Method: Composition-based stats. Identities = 104/559 (18%), Positives = 228/559 (40%), Gaps = 36/559 (6%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 + F L R +L+L+ I V +++ + F+V P L E ++ + L Sbjct: 43 MDFTVGDLDLLRQVVLVLSISICVALIVMLF--FWVREPDMRPLGA-YETEELIPVLDYL 99 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + +++ +G++I VP S ++ + GL + +G E+ + FG++ ++ Sbjct: 100 DQQKQQYKL--DGNTILVPVSDYNSLKLSMVRAGL-NQERQAGDEILMQDMGFGVSQRLE 156 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187 + + E ++A+ I+ + I ARV + +P F + +ASV + + K Sbjct: 157 QERLKLSRERQLAKAIEEMRQINKARVLLALPKQSVFVRQNQEASASVFLSLRTGANLKQ 216 Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEM 243 +A+ +VA+AVP + VTV D G+LL++ + K + + + + Sbjct: 217 EEIDAVVDMVASAVPGMKPSRVTVTDQHGRLLSSGSQDPVSAARRKEQELEKQQEDVLRD 276 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE----- 298 I+ L LG+ N+ + V EL+ + V+DP++ RS +D Sbjct: 277 KIDSVLIPILGLGNYTAQVDIELDFSAVEQTRKVFDPNTPATRSEYTLEDYNNGNVVAGV 336 Query: 299 ----TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 ++QP + ++ Q++ + D V S+ KE N+E++T + + Sbjct: 337 PGALSNQPPADASIPQDVAQMKDGSVMGQGSV----HKEATRNFELDTTISHERKQSGVV 392 Query: 355 ERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 R ++AV V ++ + G ++ L I +I+ G + RGD + + SM F Sbjct: 393 NRQTVAVAVKSRSNVNPDTGEITYTPLSEADLNSIRQILIGTVGYSENRGDLLNVLSMQF 452 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 E + + + + + +ALV ++ L++ A+++L N + Sbjct: 453 AEPEAEQIADIPIWENPNFNDWIRWLASALVIIIVVLVLV---RPAMKKLINPAADSDDQ 509 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 + G + G + + + + + + + + Sbjct: 510 MYGPDGMPIGADGETSLIGSEIDSGELFEFGSGIDLPNLHKDEDVLKA---------VRA 560 Query: 534 MIEINEERFAKILRKWARS 552 ++ E A++++ W ++ Sbjct: 561 LVANEPELAAQVVKNWMQN 579 >gi|15642132|ref|NP_231764.1| flagellar MS-ring protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121727194|ref|ZP_01680361.1| flagellar M-ring protein FliF [Vibrio cholerae V52] gi|147674591|ref|YP_001217656.1| flagellar MS-ring protein [Vibrio cholerae O395] gi|153801651|ref|ZP_01956237.1| flagellar M-ring protein FliF [Vibrio cholerae MZO-3] gi|153818978|ref|ZP_01971645.1| flagellar M-ring protein FliF [Vibrio cholerae NCTC 8457] gi|153822880|ref|ZP_01975547.1| flagellar M-ring protein FliF [Vibrio cholerae B33] gi|227082258|ref|YP_002810809.1| flagellar M-ring protein FliF [Vibrio cholerae M66-2] gi|229507782|ref|ZP_04397287.1| flagellar M-ring protein FliF [Vibrio cholerae BX 330286] gi|229511981|ref|ZP_04401460.1| flagellar M-ring protein FliF [Vibrio cholerae B33] gi|229513784|ref|ZP_04403246.1| flagellar M-ring protein FliF [Vibrio cholerae TMA 21] gi|229519117|ref|ZP_04408560.1| flagellar M-ring protein FliF [Vibrio cholerae RC9] gi|229522086|ref|ZP_04411503.1| flagellar M-ring protein FliF [Vibrio cholerae TM 11079-80] gi|229607327|ref|YP_002877975.1| flagellar MS-ring protein [Vibrio cholerae MJ-1236] gi|254226365|ref|ZP_04919954.1| flagellar M-ring protein FliF [Vibrio cholerae V51] gi|254849219|ref|ZP_05238569.1| flagellar MS-ring protein [Vibrio cholerae MO10] gi|262153482|ref|ZP_06028612.1| flagellar M-ring protein FliF [Vibrio cholerae INDRE 91/1] gi|262167493|ref|ZP_06035199.1| flagellar M-ring protein FliF [Vibrio cholerae RC27] gi|298497845|ref|ZP_07007652.1| flagellar M-ring protein FliF [Vibrio cholerae MAK 757] gi|9656684|gb|AAF95278.1| flagellar M-ring protein FliF [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121630439|gb|EAX62832.1| flagellar M-ring protein FliF [Vibrio cholerae V52] gi|124122828|gb|EAY41571.1| flagellar M-ring protein FliF [Vibrio cholerae MZO-3] gi|125621115|gb|EAZ49460.1| flagellar M-ring protein FliF [Vibrio cholerae V51] gi|126510473|gb|EAZ73067.1| flagellar M-ring protein FliF [Vibrio cholerae NCTC 8457] gi|126519576|gb|EAZ76799.1| flagellar M-ring protein FliF [Vibrio cholerae B33] gi|146316474|gb|ABQ21013.1| flagellar M-ring protein FliF [Vibrio cholerae O395] gi|227010146|gb|ACP06358.1| flagellar M-ring protein FliF [Vibrio cholerae M66-2] gi|227014029|gb|ACP10239.1| flagellar M-ring protein FliF [Vibrio cholerae O395] gi|229341011|gb|EEO06016.1| flagellar M-ring protein FliF [Vibrio cholerae TM 11079-80] gi|229343806|gb|EEO08781.1| flagellar M-ring protein FliF [Vibrio cholerae RC9] gi|229348965|gb|EEO13922.1| flagellar M-ring protein FliF [Vibrio cholerae TMA 21] gi|229351946|gb|EEO16887.1| flagellar M-ring protein FliF [Vibrio cholerae B33] gi|229355287|gb|EEO20208.1| flagellar M-ring protein FliF [Vibrio cholerae BX 330286] gi|229369982|gb|ACQ60405.1| flagellar M-ring protein FliF [Vibrio cholerae MJ-1236] gi|254844924|gb|EET23338.1| flagellar MS-ring protein [Vibrio cholerae MO10] gi|262024065|gb|EEY42760.1| flagellar M-ring protein FliF [Vibrio cholerae RC27] gi|262030719|gb|EEY49353.1| flagellar M-ring protein FliF [Vibrio cholerae INDRE 91/1] gi|297542178|gb|EFH78228.1| flagellar M-ring protein FliF [Vibrio cholerae MAK 757] Length = 580 Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 113/559 (20%), Positives = 235/559 (42%), Gaps = 36/559 (6%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 + F L R +L+L+ I V +++ + F+V P L E ++ + L Sbjct: 43 MDFTVGDLDLLRQVVLVLSISICVALIVMLF--FWVREPDMRPLGA-YETEELIPVLDYL 99 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + +++ +G++I VP S ++ + GL + + +G E+ + FG++ ++ Sbjct: 100 DQQKQQYKL--DGNTILVPVSDYNSLKLSMVRAGL-NQNRQAGDEILMQDMGFGVSQRLE 156 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187 + + E ++A+ I+ + + ARV + +P F + +ASV + + K Sbjct: 157 QERLKLSRERQLAKAIEEMRQVNKARVLLALPKQSVFVRHNQEASASVFLTVRTGANLKQ 216 Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE--IEM 243 +A+ +VA+AVP + VTV D G+LL++ + + Q E + Sbjct: 217 EEIDAVVDMVASAVPGMKPSRVTVTDQHGRLLSSGSQDPVSAARRKEQELEKQQEEALRG 276 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE----- 298 I+ L LG+ N+ + V EL+ + V+DP++ RS +D Sbjct: 277 KIDSVLIPILGLGNYTAQVDIELDFSAVEQTRKVFDPNTPATRSEYTLEDYNNGNVVAGV 336 Query: 299 ----TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 ++QP + ++ Q++ + D V S+ KE NYE++T + + Sbjct: 337 PGALSNQPPADASIPQDVAQMKDGSVMGQGSV----HKEATRNYELDTTISHERKQSGVI 392 Query: 355 ERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 R ++AV V ++ + G ++ L I +++ G + RGD + + SM F Sbjct: 393 NRQTVAVAVKSRSSVNPDTGEVTYTPLSEADLNSIRQVLIGTVGYSENRGDLLNVLSMPF 452 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 E ++ V + + +ALV ++ L++ A+++L N + Sbjct: 453 AEPEMEQIVDVPIWEHPNFNDWVRWFASALVIIIVILVLV---RPAMKKLINPAADNDDQ 509 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 + G PI + T L+ +D +D F +L N + + + Sbjct: 510 MYGP---DGMPIGADGETSLIGSD---IDGGELFEFGSGIDLP---NLHKDEDVLKAVRA 560 Query: 534 MIEINEERFAKILRKWARS 552 ++ E A++++ W ++ Sbjct: 561 LVANEPELAAQVVKNWMQN 579 >gi|254291370|ref|ZP_04962163.1| flagellar M-ring protein FliF [Vibrio cholerae AM-19226] gi|150422700|gb|EDN14654.1| flagellar M-ring protein FliF [Vibrio cholerae AM-19226] Length = 580 Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 113/559 (20%), Positives = 235/559 (42%), Gaps = 36/559 (6%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 + F L R +L+L+ I V +++ + F+V P L E ++ + L Sbjct: 43 MDFTVGDLDLLRQVVLVLSISICVALIVMLF--FWVREPDMRPLGA-YETEELIPVLDYL 99 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + +++ +G++I VP S ++ + GL + + +G E+ + FG++ ++ Sbjct: 100 DQQKQQYKL--DGNTILVPVSDYNSLKLSMVRAGL-NQNRQAGDEILMQDMGFGVSQRLE 156 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187 + + E ++A+ I+ + + ARV + +P F + +ASV + + K Sbjct: 157 QERLKLSRERQLAKAIEEMRQVNKARVLLALPKQSVFVRHNQEASASVFLTVRTGANLKQ 216 Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE--IEM 243 +A+ +VA+AVP + VTV D G+LL++ + + Q E + Sbjct: 217 EEVDAVVDMVASAVPGMKPSRVTVTDQHGRLLSSGSQDPVSAARRKEQELEKQQEEALRG 276 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE----- 298 I+ L LG+ N+ + V EL+ + V+DP++ RS +D Sbjct: 277 KIDSVLIPILGLGNYTAQVDIELDFSAVEQTRKVFDPNTPATRSEYTLEDYNNGNVVAGV 336 Query: 299 ----TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 ++QP + ++ Q++ + D V S+ KE NYE++T + + Sbjct: 337 PGALSNQPPADASIPQDVAQMKDGSVMGQGSV----HKEATRNYELDTTISHERKQSGVI 392 Query: 355 ERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 R ++AV V ++ + G ++ L I +++ G + RGD + + SM F Sbjct: 393 NRQTVAVAVKSRSSVNPDTGEVTYTPLSEADLNSIRQVLIGTVGYSENRGDLLNVLSMPF 452 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 E ++ V + + +ALV ++ L++ A+++L N + Sbjct: 453 AEPEMEQIVDVPIWEHPNFNDWVRWFASALVIIIVILVLV---RPAMKKLINPAADNDDQ 509 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 + G PI + T L+ +D +D F +L N + + + Sbjct: 510 MYGP---DGMPIGADGETSLIGSD---IDGGELFEFGSGIDLP---NLHKDEDVLKAVRA 560 Query: 534 MIEINEERFAKILRKWARS 552 ++ E A++++ W ++ Sbjct: 561 LVANEPELAAQVVKNWMQN 579 >gi|148976413|ref|ZP_01813119.1| flagellar M-ring protein [Vibrionales bacterium SWAT-3] gi|145964236|gb|EDK29492.1| flagellar M-ring protein [Vibrionales bacterium SWAT-3] Length = 580 Score = 337 bits (864), Expect = 3e-90, Method: Composition-based stats. Identities = 106/554 (19%), Positives = 228/554 (41%), Gaps = 36/554 (6%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 L R +L+L+ I V +++ + F+V P L E ++ + L + I Sbjct: 48 GDLDLLRQVVLVLSISICVALIVMLF--FWVKEPEMRPLGA-YETEELIPVLDYLDQQKI 104 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 ++ + G++ISVP+S ++++ GL + N+G ++ + FG++ +++ Sbjct: 105 EYSLE--GNTISVPASEYNSLKLNMVRAGL-NQERNAGDDILMQDMGFGVSQRLEQERLK 161 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEA 190 + E ++A+ I+ + + A+V + +P F + +ASV + + K ++ Sbjct: 162 LSRERQLAKAIEQMKQVRKAQVLLALPKQSVFVRHNQEASASVFLTLKTGTNLKQQEVDS 221 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNINKA 248 + +VA+AVP + +TV D G+LL++ + K + + + + I+ Sbjct: 222 VVDMVASAVPGMKTSRITVTDQHGRLLSSGSQDPMSAARRKEHELERNQEQALREKIDSI 281 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET--------- 299 L LG N+ + V +L+ + +DP++ RS +D T Sbjct: 282 LIPILGFGNYTAQVDIQLDFSAVEQTRKRFDPNTPATRSEYTLEDYNNGNTVAGIPGALS 341 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 +QP S ++ Q++ + D + S+ KE N+E++T + R ++ Sbjct: 342 NQPPSDASIPQDVAQMKDGAMTGQGSV----HKEATRNFELDTTISHERKQTGTVNRQTV 397 Query: 360 AVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 +V + ++ + G S + I +++ G + RGD + + SM F Sbjct: 398 SVAIKDRQSINPDTGEVVHTPIPASEINAIRQVLIGTVGFDESRGDLLNVLSMQFAPQIT 457 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 V + + +ALV +V L++ A+++L N ++ G Sbjct: 458 DVVPDVPIWEHPNFNDWVRWFASALVIIVVVLVLV---RPAIKKLLNPAADNDEQMYGP- 513 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 PI + T L+ D ++ F S +L N + + + ++ Sbjct: 514 --DGMPIGADGETSLIGGD---IEGGELFEFGSSIDLP---NLHKDEDVLKAVRALVANE 565 Query: 539 EERFAKILRKWARS 552 E A++++ W Sbjct: 566 PELAAQVVKNWMAD 579 >gi|83859389|ref|ZP_00952910.1| flagellar M-ring protein [Oceanicaulis alexandrii HTCC2633] gi|83852836|gb|EAP90689.1| flagellar M-ring protein [Oceanicaulis alexandrii HTCC2633] Length = 551 Score = 337 bits (864), Expect = 3e-90, Method: Composition-based stats. Identities = 149/558 (26%), Positives = 251/558 (44%), Gaps = 19/558 (3%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 AIL+QL +F G R+ + + + +NS L+ L +D Sbjct: 3 AILEQLSRF-------GVGRLAAILGLTAGAAAALVFFTMSMNSNGQALLFSGLGPADAA 55 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 +S L +A I + + + GS++ V + V +AR+ +A+ G S S GYE+FD+ ++ G Sbjct: 56 AVSQRLDQAGISYELQEGGSAVYVSTDQVDEARMRVASGGALSFGS-VGYEIFDETDALG 114 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 TSF+Q + RALEGE+AR+I +++ + AARVH+V+P+ F + P+ASV+I Sbjct: 115 TTSFVQNVNAKRALEGELARSINTLNTVSAARVHLVLPERRLFSREQQEPSASVVISVRG 174 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQ-AIQH 239 IR+LVA AVP L +T+ D G+LL A + E ++LG L Q AI+ Sbjct: 175 ELPSAQINTIRNLVATAVPGLQANRITLADDQGRLLAAPSDAEGDVLGAMLDDRQNAIER 234 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 +++ I + +G R AV AE+N ++Q + YDPD +VE S R ++ + Sbjct: 235 DLQQKIRDLVEGIVGSGGVRVAVTAEINRESQTRTRLEYDPDGQVEVSRRAIEERRSEPV 294 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + V+V +N P L ++ + NY+ + + LERL++ Sbjct: 295 NS--GGVSVSENTPDAEAGANGETPLLATSESSTTERNYQNTQEETVSIIQAGDLERLAV 352 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR----RGDTI-TITSMDFL 414 +VVV++ + G + + + ++ L +I +V+AA G + GD I +TSM F Sbjct: 353 SVVVDEVAVVGEDGTLSFEPRSEAELTQIRNLVAAAVGFPTDTTLTDGDQILQVTSMRFN 412 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 L F + F + V V LLV L L + + + Sbjct: 413 RPDLTLGTPAPEGF-SLARLDFMRIAEIAVLFVTALLVILLVARPLVQGAVGNVSAARPA 471 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 + L+ N + + D S ++I V K S ++ + Sbjct: 472 LAGAGSGGGKALPDNVQALLGNSDGTVMLPEGD-PSDDHIDVAQIEGQVKKSSVRKVAAL 530 Query: 535 IEINEERFAKILRKWARS 552 +E + + ILR W Sbjct: 531 VEQHPDESMSILRTWMHD 548 >gi|154174065|ref|YP_001408875.1| flagellar MS-ring protein [Campylobacter curvus 525.92] gi|112803763|gb|EAU01107.1| flagellar M-ring protein FliF [Campylobacter curvus 525.92] Length = 567 Score = 337 bits (864), Expect = 3e-90, Method: Composition-based stats. Identities = 121/569 (21%), Positives = 236/569 (41%), Gaps = 28/569 (4%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEV 57 A+L Q+ Q ++ + R +I+ S+++V L + + Y L+ + Sbjct: 5 ALLHQISQIYQKLS--LRQKIVAAGSIVVVVGFLVFLSIYKDMKGDTYAGYSVLFENISP 62 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 +D I L++ ++ +++++ G +I VP+ V K RI +A G+P S G+E+FDK Sbjct: 63 NDSALIIDQLNKDSVSYKLANEG-TILVPTGDVYKERIAVATLGIPKESK-IGFEIFDKQ 120 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 FG T Q + RALEGE+ARTI+S+S I A V I +P F + + PTAS+++ Sbjct: 121 E-FGSTDAEQRVKFQRALEGELARTIESLSSIQKATVRIAIPKESVFTERQSPPTASIVV 179 Query: 178 RAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSI 233 K I++LVAAAV NL+ +V +++ G L + E +++ + + Sbjct: 180 ELKPGVSLSAKQIFGIKNLVAAAVTNLNTENVKIVNQDGVALGEEDGEFDSDMIAQQIRY 239 Query: 234 VQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292 + + E I LA + G D + V + + D + + YDP++ V + + Sbjct: 240 KREFETNYEQKIINVLAPIVGGTDRVVAKVNIDFDFDKKDSQSETYDPNNVVRSESNIEE 299 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 Q S ++ + N+ V + + E +K +Q+NYEI+ K Sbjct: 300 KRQGSAPNEIQGVPGAVSNIGPV--QGLSDSNIKEQYNKSSQQTNYEISKKITNIKGQFA 357 Query: 353 KLERLSIAVVVN------KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 + R+S AVVV+ K G + I ++ A G +++RGD + Sbjct: 358 SIVRVSAAVVVDGLYQPKKDEAGNPTGDIEYVALTQAQKDSITNLIKQAIGYSAQRGDEV 417 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 T+ + +F +L + + + + L ++ LL+ + Sbjct: 418 TLDNFEF---KLAKDVSTSQRMDGFMHNYILPFVPLLKYIFAALLLYIFYKKVIVPFMQK 474 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 + + + A + + + + V + Sbjct: 475 MLEEAKDEDEPLPQDELEEIEIDAEDTLEKFKAARKKVEEQLGLSGDFNEDELRYDVLLE 534 Query: 527 SDLRLLHMIEINEERFAKILRKWARSEIE 555 ++ +I E A +L++ +++ + Sbjct: 535 ---KMKTVILERSEEIANLLQEMVKNDND 560 >gi|296133049|ref|YP_003640296.1| flagellar M-ring protein FliF [Thermincola sp. JR] gi|296031627|gb|ADG82395.1| flagellar M-ring protein FliF [Thermincola potens JR] Length = 517 Score = 337 bits (864), Expect = 4e-90, Method: Composition-based stats. Identities = 119/561 (21%), Positives = 221/561 (39%), Gaps = 57/561 (10%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 + + +++ + + T + I++ A ++ + + + P Y L+ +L+ D Sbjct: 6 LQLKTKIVGLWNNMTRNQKIVIIVSALFLVGTLAVLVRG---ATRPDYAPLFTQLDPQDA 62 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 + L E I ++++D G++I VPS V + RI L+++G P+ G+E FD+ F Sbjct: 63 GKTVEWLKENKIPYQLADGGTTILVPSKDVDQTRISLSSEGYPTGGV-VGFEAFDQT-KF 120 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 G T + +RAL+GE+ RTI+ S + ARVHIV+P+ F + TA+V ++ Sbjct: 121 GETDTDRRARFIRALQGELTRTIERFSEVDKARVHIVLPEPSLFLEEQKNATAAVWLQLK 180 Query: 181 NPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN------EMERNILGKSLS 232 + + LVA +V L +VTV+D G +L+ + ++ + L Sbjct: 181 PTKTLDENQVKGLVKLVANSVEGLSPENVTVVDMNGNILSESLDFSKEAQQQKLSMTQLE 240 Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292 I + Q +++ ++ L +G+ V AEL+ D Q + Y D V + + Sbjct: 241 IQKTFQADLQRSLQSMLEKVVGIGKVVCRVRAELDFDQIQKKTENYG-DKHVLSEQKTEQ 299 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 + S T+ P++ N+P S + + NY + + T Sbjct: 300 SSSSSNTATPQNTPGTAGNIPGYV---ATGGNSNSQSSSSDVVRNYVHDKEETVQTVAPG 356 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 ++RLS++V+++K I + V A GIN RGD +++ M Sbjct: 357 SVKRLSVSVMIDK-------------AINQQQQKAIEEAVVNAAGINRDRGDQVSVIGMP 403 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F + T+I LL+ + +R L + G Sbjct: 404 FNTEYQQEMAREMA-----QADRKQTIILFGSLGAVLLLIIVAVILRVRMLKKEQLEELG 458 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 E+ TT L + + + + RI V Sbjct: 459 EIA--------------TTPLPLKAMEEIIEIEEKELTPEEKEKIRIKEQV--------E 496 Query: 533 HMIEINEERFAKILRKWARSE 553 + N A++L+ W E Sbjct: 497 KVAGENPADVAQLLKTWLAEE 517 >gi|331645402|ref|ZP_08346506.1| flagellar M-ring protein FliF [Escherichia coli M605] gi|331045564|gb|EGI17690.1| flagellar M-ring protein FliF [Escherichia coli M605] Length = 548 Score = 336 bits (861), Expect = 7e-90, Method: Composition-based stats. Identities = 125/549 (22%), Positives = 239/549 (43%), Gaps = 41/549 (7%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 + +L+ + V + + + + + Y +LY + E V++I L + +RI Sbjct: 23 KRWVLMAGVGLAVAVTAIIVSVLWTGNRGYVSLYGRQENLPVSQIVTVLDGEKLTYRIDP 82 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 I VP + K R+ LAA+G+ + SGYEL DK G + F+Q + R+LEGE Sbjct: 83 QSGQILVPEDALSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSSQFVQNVRYKRSLEGE 141 Query: 139 IARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINPSVY--KSAEAIRHLV 195 +A++I S+ + +ARVH+ + + SF + +ASV++R + AI HLV Sbjct: 142 LAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYGAKLNMDQVNAIVHLV 201 Query: 196 AAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINKALAA 251 + ++P L V+V+D G LLT A E K I++ IQ +I ++ L + Sbjct: 202 SGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKIRASVANVLDS 261 Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE-SAVTVEQ 310 +G N+R +V+ +L++ T + Y K+ R + S+T+Q Sbjct: 262 LVGTGNYRVSVMPDLDLSTIDETQEHYGDAPKINR----EESVLDSDTNQVAMGVPGSLS 317 Query: 311 NMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365 N P ++ ++ + E + +Y + H + ++RL++AVV+N+ Sbjct: 318 NRPPIAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHPGFAVKRLNVAVVLNQ 377 Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425 A + ++ +++ A GI+++RGD ++++ ++F+ + + Sbjct: 378 NA-------PALKNWKPEQTTQLTALLNNAAGIDAQRGDNLSLSLLNFVPQAVPVEPVIP 430 Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485 + D +V+ + + LL L +R L A + V P Sbjct: 431 LWKDD-------SVLAWVRLIGCGLLALLLLFFVVRPLMKRLTAVRAPV-------ITPE 476 Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545 AV+ + + + +L S+ + K L+ L M + + R A++ Sbjct: 477 PEAVSEPWIAMPEEERKNVDLPSLPGDDSLPSQSSGLEVKLEFLQKLAMSDTD--RVAEV 534 Query: 546 LRKWARSEI 554 LR+W S Sbjct: 535 LRQWITSNE 543 >gi|300936110|ref|ZP_07151050.1| flagellar M-ring protein FliF [Escherichia coli MS 21-1] gi|300458730|gb|EFK22223.1| flagellar M-ring protein FliF [Escherichia coli MS 21-1] Length = 551 Score = 336 bits (861), Expect = 7e-90, Method: Composition-based stats. Identities = 130/567 (22%), Positives = 249/567 (43%), Gaps = 44/567 (7%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L Q F+ + + L+ + V + + + + Y +LY + E V++I Sbjct: 8 LTQAFPAFRLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQI 67 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L + +RI I VP + K R+ LAA+G+ + SGYEL DK G + Sbjct: 68 VTVLDGEKLSYRIDPQSGQILVPEDELSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSS 126 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINP 182 F+Q + R+LEGE+A++I S+ + +ARVH+ + + SF + +ASV++R Sbjct: 127 QFVQNVRYKRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYG 186 Query: 183 SVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQA 236 + AI HLV+ ++P L V+V+D G LLT A E K I++ Sbjct: 187 AKLNMDQVNAIVHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKD 246 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 IQ + ++ L + +G N+R +V+ +L++ + Y K+ R ++ Sbjct: 247 IQDKTRASVANVLDSLVGSGNYRVSVMPDLDLSNIDETQEHYGDAPKINR----EENVLD 302 Query: 297 SETSQPE-SAVTVEQNMPHVSDRKVPLPRSLENTDK--------KEEQSNYEINTKSIAT 347 S+T+Q N P V+ +V + ++ E + +Y + Sbjct: 303 SDTNQVAMGVPGSLSNRPPVAPNQVTNGAMPADENRSPEALSKHSESKRDYSYDRSVQHI 362 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 H + ++RL++AVV+N+ A + ++ +++ A GI+++RGD +T Sbjct: 363 QHPGFTVKRLNVAVVLNQNA-------PALKNWKPEQTTQLTALLNNAAGIDAQRGDNLT 415 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 ++ ++F+ + + + D + A V L+ LL+ F+ ++RL + Sbjct: 416 LSLLNFVPQAVPVEPIIPLWKDDSV---LAWVRLIGCGLLALLLLFFVVRPVMKRLTAVR 472 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 +++P P + + MP + + + +L S+ + K Sbjct: 473 AP---------VITPEPEAVSEPWIAMPEEE--RKNVDLPSLPGDDSLPSQSSGLEVKLE 521 Query: 528 DLRLLHMIEINEERFAKILRKWARSEI 554 L+ L M + + R A++LR+W S Sbjct: 522 FLQKLAMSDTD--RVAEVLRQWITSNE 546 >gi|260432137|ref|ZP_05786108.1| flagellar M-ring protein FliF [Silicibacter lacuscaerulensis ITI-1157] gi|260415965|gb|EEX09224.1| flagellar M-ring protein FliF [Silicibacter lacuscaerulensis ITI-1157] Length = 531 Score = 336 bits (861), Expect = 8e-90, Method: Composition-based stats. Identities = 147/554 (26%), Positives = 235/554 (42%), Gaps = 27/554 (4%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + Q+ + SL R + +I+A ++ + +A V SP LY LE I Sbjct: 1 MQQIGTVWA---SLDRRKQIIVAGAAILVFLSVLAMSRVVTSPSMTLLYAGLEAGAAGDI 57 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 AL + + + I G SI VP S + R+ LA++GLP++ N GYEL D ++ FG T Sbjct: 58 VRALDQRGVTYEIR--GGSIYVPVSKRDELRMTLASEGLPANG-NRGYELLDSLSGFGTT 114 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 S M + RA EGE+ARTI S + ARVHI F++ A PTASV + Sbjct: 115 SQMFDAAYWRAKEGELARTIVSSPHVSQARVHIANGSSNPFQRSVA-PTASVYLVPAGAR 173 Query: 184 VY-KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242 V + A+AIR LVA+AV L DV V+DS G ++ E Sbjct: 174 VTVEQAKAIRFLVASAVTGLAPEDVAVIDSNGAVIGPQEAVVATDTADDKARLL-----R 228 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 + + + A +G N V + +T+ IRE +DP +V S + + + S Sbjct: 229 ERVLRLVEARVGPGNAVVEVSVDTVTETESIRERRFDPKGRVAISTDIEERSDSSRN--Q 286 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 S VTV N+P S + E+ NYE++ + ++RL++AV+ Sbjct: 287 SSDVTVASNLPD--GDAAGGDESNSTATQTRERVNYEVSETELEVHRVPGAIKRLTVAVI 344 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 VN R + G + + L + ++V++A G ++ RGD IT+ SM+ L + Sbjct: 345 VNGTRTVDASGTPVFEPMPEPELEALQELVASAVGFDAERGDVITLKSME-LPDLEPQGT 403 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI-LS 481 S + ++I V + +L+ +GL +R + + Sbjct: 404 LATASIWHSIHLDAMSLIQMAVLAIVSLV---MGLFVIRPILTSAPVAALPPAANGPNAA 460 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 P + L ++ + + Q+R V+ RL MI +E Sbjct: 461 DAPFLVGEIEDAAGQELTQLPAAPEQGSTTPAIAQARSEDAVA-----RLRSMIGDKQEE 515 Query: 542 FAKILRKWARSEIE 555 +ILR W E Sbjct: 516 TVEILRSWLEESEE 529 >gi|149188085|ref|ZP_01866380.1| flagellar M-ring protein [Vibrio shilonii AK1] gi|148838073|gb|EDL55015.1| flagellar M-ring protein [Vibrio shilonii AK1] Length = 582 Score = 335 bits (860), Expect = 1e-89, Method: Composition-based stats. Identities = 112/551 (20%), Positives = 234/551 (42%), Gaps = 33/551 (5%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 L R ++L I + + L + F+V P L V E ++ + L + + ++ Sbjct: 50 DLDLLRQIVLVLSISICVALIVMLFFWVKEPEMRPLGV-YETEELIPVLDYLDQKKVQYK 108 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135 + G+++SVP+S ++ + G+ +S N+G ++ + FG++ +++ + Sbjct: 109 LE--GNALSVPASEYNNLKLDMVRAGINRAS-NTGDDILMQDMGFGVSQRLEQERLKLSR 165 Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEAIRH 193 E ++ + I+ + + ARV + +P F + +ASV + +V + +++ Sbjct: 166 ERQLGKAIEQMKQVRTARVLLALPKQSVFVRHNQEASASVFLTLATGAVLRQQEVDSVVD 225 Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKALAA 251 +VA+AVP + +TV D G+LL++ + + K + Q + + I+ L Sbjct: 226 MVASAVPGMKPSRITVTDQHGRLLSSGSQDAASMARRKEQELEQNQEQALREKIDSVLIP 285 Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------TSQP 302 LG+ N+ + V EL+ + +DP++ RS +D ++QP Sbjct: 286 ILGLGNYTAQVDIELDFSAVEQTRKRFDPNTPATRSEYTLEDYNNGNVVAGVPGALSNQP 345 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 + ++ ++ + D + S+ KE N+E++T + + R ++AV Sbjct: 346 PADASIPTDVAQMKDGSIMGQGSV----HKEATRNFELDTTISHERKQSGVVNRQTVAVA 401 Query: 363 V-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 + N+ + G Q + +S LA I +++ A G N RGD + + SM F E Sbjct: 402 IKNRSSVNPDTGEVTYQPRSESELAAIRQVLIGAVGFNENRGDLLNVLSMTFEEPTTDLL 461 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 V + + +ALV +V ++ A+++L N A + E Sbjct: 462 PDVPIWEHPNFNDWIRWFASALVIIVVVFVLI---RPAMKKLLNP--AAQEEDDQLYGPD 516 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 P+ + T L+ D +D S FS +L N + + + ++ E Sbjct: 517 GLPLGADGETSLIGTD---IDGSELFEFSTGIDLP---NLHKDEDVLKAVRALVANEPEL 570 Query: 542 FAKILRKWARS 552 A++++ W Sbjct: 571 AAQVVKNWMAE 581 >gi|58038899|ref|YP_190863.1| flagellar MS-ring protein [Gluconobacter oxydans 621H] gi|58001313|gb|AAW60207.1| Flagellar M-ring protein FliF [Gluconobacter oxydans 621H] Length = 482 Score = 335 bits (859), Expect = 1e-89, Method: Composition-based stats. Identities = 118/484 (24%), Positives = 209/484 (43%), Gaps = 18/484 (3%) Query: 84 SVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTI 143 VP V +AR+ LA GLP S + GYE+FDK NSF T F Q I RALEGE+ R+I Sbjct: 1 MVPDDDVARARLLLAQSGLP-SGGSVGYEIFDKGNSFTATQFEQTINETRALEGELERSI 59 Query: 144 QSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPN 201 + I G+ ARVH+V+ F ASV++ +S A+ +LV+AAVP Sbjct: 60 RLIHGVRNARVHLVLRHRELFSTDEQNAQASVLLSMDGGRRLDEESIAAVVNLVSAAVPG 119 Query: 202 LDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQA-IQHEIEMNINKALAAFLGVDNFRS 260 LD +++++D+ G +L + G+S + I+ I + L + LG + R Sbjct: 120 LDAHNISLIDNRGHVLLKQGEGNSNGGQSAEEQRQLIEQRIAREVEDLLGSSLGPGHVRV 179 Query: 261 AVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV 320 +N D + + YDPD +V RS + + +S +Q + TV N+P+ Sbjct: 180 EANVTMNNDHVRETQENYDPDQQVLRSQQTKTE--KSINTQGSTNTTVSNNLPNA---NA 234 Query: 321 PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380 ++ ++++E+ +NYEI+ D ++ R+S+AV+V+ ++ G ++ Q + Sbjct: 235 GQQQNGSQSNRQEQTNNYEISKTVRTLVQDQPRIARISMAVMVDGISQSDGKGHASWQPR 294 Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDIL-SRHFATV 439 L + + +A G + RGD +T+ SM F + + S + Sbjct: 295 NQEELGRLTALTKSAVGFDQSRGDVVTVMSMKFTDMDMEMKPETSGWSKFFTHSNQMEAI 354 Query: 440 INALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN- 498 L +++ F+ LR + K +P S+ +P+ Sbjct: 355 RFGLFAACLAMVLFFVVRPLLRPIGEPSSGKLLNFAASKDRTPAVDLSSQGAVYLPDSQS 414 Query: 499 -------IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWAR 551 + N + S + + S +++ ++E + ++R W Sbjct: 415 ERARTPMLEAAYVNAEPVDEETVSVSGVQGRIRASSVQKVVDLVETHPSESIALVRGWLM 474 Query: 552 SEIE 555 E Sbjct: 475 PSQE 478 >gi|195952552|ref|YP_002120842.1| flagellar M-ring protein FliF [Hydrogenobaculum sp. Y04AAS1] gi|195932164|gb|ACG56864.1| flagellar M-ring protein FliF [Hydrogenobaculum sp. Y04AAS1] Length = 500 Score = 335 bits (859), Expect = 1e-89, Method: Composition-based stats. Identities = 132/555 (23%), Positives = 245/555 (44%), Gaps = 67/555 (12%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 IL+ L + F+ +L +T+ +I+ S+ +V +L F + HY LY L D+ Sbjct: 6 ILNNLKERFQ---ALNKTQQIIVLSIPVVLALLTGLIFFLTSRVHYAVLYGDLNNRDMAA 62 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I+ L + N+ ++I+ +G +I VP + R+ LAA GLP+ G++L +K G+ Sbjct: 63 IAEQLEKDNVKYKITQDGRTILVPKQEARQLRLKLAAMGLPTKGYP-GFKLLNK-MPLGM 120 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T FMQ + RALE E++ TI I A+V++ +P F +P+ASV I Sbjct: 121 TDFMQHVEYQRALEEELSNTILGFRNIEKAKVNLAIPKPSIFITQSQKPSASVFIELKPG 180 Query: 183 S--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQ 238 + + AIR+LVAA+VP+L VTV+DS G LT N + + L + ++ Sbjct: 181 ASITRRQVIAIRNLVAASVPDLTPNRVTVVDSNGVDLTEELNNPSSYLTNEQLRVKTDLE 240 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 + I ++ + L LG +N R AV E + + + Y+P++ S + ++ Sbjct: 241 NSITKHLEQVLGQALGYNNVRVAVDVEPDFSQVETKSKNYNPNTTAIVSQQKKQETTTGT 300 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 + N+P +S + P + + KKE +NY+++ + +++R+S Sbjct: 301 S--VSGVPGTASNIPPMSGLR---PNANFQSTKKEVTTNYDVSVEKTHVVDKTIRIKRMS 355 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 + V+VN + L I ++V AA G++ +RGDT+++ ++ F + Sbjct: 356 VGVIVNAD-------------LKNVNLNSIRQLVIAAAGVDPKRGDTVSVIAVPFYRPVV 402 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 + + +++ I L+ L L V L + E+ Sbjct: 403 -----PKPPIYVVYAKYGIAGILLLLLLGILLFVF---------LKTRKKPEVREL---- 444 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 P SA L + L +++ + +++ + + N Sbjct: 445 -----PAVSAAMEALESLETEELREKAKELIT-----------------VDKMIKVTKEN 482 Query: 539 EERFAKILRKWARSE 553 ++ AKI++ W S Sbjct: 483 PDKVAKIIKHWLSST 497 >gi|89075513|ref|ZP_01161924.1| flagellar M-ring protein [Photobacterium sp. SKA34] gi|89048785|gb|EAR54356.1| flagellar M-ring protein [Photobacterium sp. SKA34] Length = 582 Score = 335 bits (859), Expect = 1e-89, Method: Composition-based stats. Identities = 101/553 (18%), Positives = 213/553 (38%), Gaps = 29/553 (5%) Query: 14 GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73 +L R +IL + + + L + ++ P L E ++ I + I Sbjct: 45 LGNLDLLRQVILVLSVAICVALIVLVTMWIKEPEMRPLGS-YETEELIPILDHFDQKKIA 103 Query: 74 FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 +++ +G++I VP+ ++ L GL ++ + G ++ + FG++ M+ Sbjct: 104 YQL--DGNTIRVPADEYSAIKLDLTRTGL-NAQTVEGDDILLQDMGFGVSQRMESERLKL 160 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEAI 191 + E ++AR I+ IS + A+V + P F + TA+V + + ++I Sbjct: 161 SRERQLARAIEQISQVRKAQVLLATPKQSVFVRHNQEATATVFLTLSSGGSLGQQEVDSI 220 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKAL 249 +VA AVP L VTV D G+LL++ + + K + + + + I+ L Sbjct: 221 VDMVATAVPGLRPTRVTVTDQHGRLLSSGTEDPSTTAKRKEYELERKQEQALREKIDAIL 280 Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309 LG+ N+ S V ++ + YDP + RS +D +Q Sbjct: 281 MPVLGLGNYTSQVDVAMDFSALEETRKRYDPSTAATRSEFTLEDINGG--NQVAGIPGAL 338 Query: 310 QNMPHVSDRKV-------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 N P V + + +E NYE++T ++R +++V Sbjct: 339 SNQPPVESAIPQNVKDMQSGTNGSDGSVHRESTRNYELDTTISHKRAQTGVIDRQTVSVA 398 Query: 363 VNKGRLTEV-LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 V+ +T+ G ++ +A+I +++ G RGD + + S+ F + + Sbjct: 399 VDYKTITDPKTGDVTRVPVSEAEIAKIRRLLMGGIGFLEARGDLLEVLSVPFALPESQLA 458 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR-RLHNIDDAKKGEVGGKSIL 480 + + S + ALV +V +++ + L D E G + Sbjct: 459 ADLPIWENPNFSSWVRWIAAALVIIVVIMVLVRPAMRKLLYPNQAPDGTPLDENGMPVMA 518 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 + + L + L SS+ D+ N + + + +++ + Sbjct: 519 NSADSVGLIGAELDGGEGFELSSSSLDLP----------NLHKDEDLLKAVRALVDNEPD 568 Query: 541 RFAKILRKWARSE 553 A++++ W + Sbjct: 569 LAAQVVKSWVNED 581 >gi|332162913|ref|YP_004299490.1| flagellar M-ring protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667143|gb|ADZ43787.1| Flagellar M-ring protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 541 Score = 335 bits (859), Expect = 1e-89, Method: Composition-based stats. Identities = 126/565 (22%), Positives = 251/565 (44%), Gaps = 44/565 (7%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +LD++ Q + LG+ + IL + + + + +S Y L+ E V + Sbjct: 1 MLDKIKQQLPA-IRLGKNQKSILMGAAAILVTGAIIFSLWRSSQGYTALFGSQEHIPVTQ 59 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + L I +RI+ + I V + +G+ARI LAA+G+ +++ +GYEL D+ G Sbjct: 60 VVEVLDGEAIAYRINPDNGQILVAENQLGRARILLAAKGI-TATLPTGYELMDQETMLGS 118 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRAIN 181 + F+Q + R+LEGE+A++I +++ + ARVH+ M + SF + +ASV++R Sbjct: 119 SQFIQNVRYKRSLEGELAQSIMALTSVDYARVHLGMSEASSFAISNRSESSASVILRLKY 178 Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQ 235 K AI LVA ++P + +V V+D G+LL+ AN + + Sbjct: 179 GQTLKADQVGAIVQLVAGSIPGMKAANVRVVDQHGELLSEAYQANGKGMTNVKNGAELAH 238 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 +Q E +I L++ +G +N+R +V +L++ + Y + +V S + Sbjct: 239 YLQSTTEKSIANLLSSVVGANNYRISVATQLDLSRVEETLERYGAEPRV------SDENI 292 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 + E + A+ + ++ + + + + + Q Y + H +KLE Sbjct: 293 QQENGNEDMAMGIPGSLSNQPAAQPKNANAPAAMSRSQAQRKYAYDRDIRHVRHPGFKLE 352 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 ++++AV++NK A + L E+ +++ A GI+++RGD++T+ + F Sbjct: 353 KMTVAVILNKSA-------PALEKWTPEQLNELKRLIEDAAGIDAKRGDSLTLNMLAFTV 405 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR-RLHNIDD-----A 469 L + + + D + + + + + G+ L RL DD A Sbjct: 406 PTLIDEPVI-AWWQDATTFRWVEIAGIGLLSLLF---LLFGVRPLMARLSRRDDKHSALA 461 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 + G ++ + SSA T ++P + NL + + K S Sbjct: 462 MAENIDGLNVTNTTSESSATTEPMLPGSSF----------KEDDNLPPQGSGLEIKISH- 510 Query: 530 RLLHMIEINEERFAKILRKWARSEI 554 L + + ER A+++++W + Sbjct: 511 -LQQLAQSETERVAEVIKQWINNNE 534 >gi|163801845|ref|ZP_02195742.1| flagellar M-ring protein [Vibrio sp. AND4] gi|159174353|gb|EDP59157.1| flagellar M-ring protein [Vibrio sp. AND4] Length = 580 Score = 335 bits (858), Expect = 1e-89, Method: Composition-based stats. Identities = 100/554 (18%), Positives = 228/554 (41%), Gaps = 36/554 (6%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 L R +L+L+ I V +++ + F+V P L E ++ + L + I Sbjct: 47 GDLDLLRQVVLVLSISICVALIVMLF--FWVKEPEMRPLGA-YETEELIPVLDYLDQQKI 103 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 ++++ +GS++SV SS ++ + G+ + ++ +G ++ + FG++ +++ Sbjct: 104 NYKL--DGSTVSVESSDYNSIKLGMVRAGV-NQATAAGDDILLQDMGFGVSQRLEQERLK 160 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEA 190 + E ++A+ I+ + + ARV + +P F + +ASV + K ++ Sbjct: 161 LSRERQLAQAIEEMKQVRKARVLLALPKHSVFVRHNQEASASVSLTISTGVNLKQQEVDS 220 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKA 248 I +VA+AVP + +TV D G+LL++ + K + ++ + + I+ Sbjct: 221 IVDMVASAVPGMKTSRITVTDQHGRLLSSGSQDPASAARRKEQELERSQEQGLREKIDSV 280 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------T 299 L LG N+ + V +++ T + +DP++ RS +D + Sbjct: 281 LLPILGFGNYTAQVDIQMDFSTVEQTRKNFDPNTPSTRSEYALEDYNNGNMVAGIPGALS 340 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 +QP + ++ Q++ + D + S+ +KE N+E++T L R ++ Sbjct: 341 NQPPADASIPQDVAQMKDGTLTGQGSV----RKESTRNFELDTTISHERKQTGTLARQTV 396 Query: 360 AVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 +V + ++ + G +S + I +++ A G + RGD + + S+ F E +L Sbjct: 397 SVAIKDRRVVNPDTGEVTYTPLSESEINAIRQVLIGAVGFDESRGDLLNVLSVKFAEPEL 456 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 + + +ALV +V L++ A+++L N + E+ G Sbjct: 457 EQMTDPPIWEHPNFNDWVRWFASALVIIVIILVLV---RPAMKKLLNPASDDEDEMYGPD 513 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 L G + + + + + + + ++ Sbjct: 514 GLPIGADGETSLIGSDIESGELFEFGSSIDLPNLHKDEDVLKA---------VRALVANE 564 Query: 539 EERFAKILRKWARS 552 E A++++ W Sbjct: 565 PELAAQVVKNWMNE 578 >gi|323975944|gb|EGB71038.1| flagellar M-ring protein FliF [Escherichia coli TW10509] Length = 548 Score = 335 bits (858), Expect = 1e-89, Method: Composition-based stats. Identities = 127/564 (22%), Positives = 241/564 (42%), Gaps = 41/564 (7%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L Q F+ + + L+ + V + + + + Y +LY + E V++I Sbjct: 8 LTQAFPAFRLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQI 67 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L + +RI I VP + K R+ LAA+G+ + SGYEL DK G + Sbjct: 68 VTVLDGEKLTYRIDPQSGQILVPEDELSKTRMTLAAKGV-QAILPSGYELMDKDEMLGSS 126 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINP 182 F+Q + R+LEGE+A++I S+ + +ARVH+ + + SF + +ASV++R Sbjct: 127 QFVQNVRYKRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYG 186 Query: 183 SVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQA 236 + AI HLV+ ++P L V+V+D G LLT A E K I++ Sbjct: 187 AKLNMDQVNAIVHLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKD 246 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 IQ + ++ L + +G+ N+R +V+ +L++ T + Y K+ R + Sbjct: 247 IQDKTRASVANVLDSLVGMGNYRVSVMPDLDLSTIDETQEHYGDAPKINR----EESVLD 302 Query: 297 SETSQPE-SAVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHD 350 S+T+Q N P ++ ++ + E + +Y + H Sbjct: 303 SDTNQVAMGVPGSLSNRPPIAANQMTNGAEENRSPEALSKHSESKRDYSYDRSVQHIQHP 362 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 + ++RL++AVV+N+ A + ++ +++ A GI+++RGD +T++ Sbjct: 363 GFAVKRLNVAVVLNQNA-------PALKNWKPEQTTQLTALLNNAAGIDAQRGDNLTLSL 415 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 ++F+ + + + D +V+ + LL L +R L A Sbjct: 416 LNFVPQAVPVEPVIPLWKDD-------SVLAWGRLIGCGLLALLLLFFVVRPLMKRLTAV 468 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 + V P A++ + + + +L S+ + K L+ Sbjct: 469 RAPV-------ITPEPEAISEPWIAVPEEERKNVDLPSLPGDDSLPSQSSGLEVKLEFLQ 521 Query: 531 LLHMIEINEERFAKILRKWARSEI 554 L M + + R A++LR+W S Sbjct: 522 KLAMSDTD--RVAEVLRQWITSNE 543 >gi|327254536|gb|EGE66152.1| flagellar M-ring protein FliF [Escherichia coli STEC_7v] Length = 548 Score = 335 bits (858), Expect = 2e-89, Method: Composition-based stats. Identities = 128/564 (22%), Positives = 241/564 (42%), Gaps = 41/564 (7%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L Q F+ + + L+ + V + + + + Y +LY + E V++I Sbjct: 8 LTQAFPAFRLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQI 67 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L + +RI I VP + K R+ LAA+G+ + SGYEL DK G + Sbjct: 68 VTVLDGEKLTYRIDPQSGQILVPEDELSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSS 126 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINP 182 FMQ + R+LEGE+A++I S+ + +ARVH+ + + SF + +ASV++R Sbjct: 127 QFMQNVRYKRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYG 186 Query: 183 SVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQA 236 + AI HLV+ ++P L V+V+D G LLT A E K I++ Sbjct: 187 AKLNMDQVNAIVHLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKD 246 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 IQ + ++ L + +G N+R +V+ +L++ T + Y K+ R + Sbjct: 247 IQDKTRASVANVLDSLVGSGNYRVSVMPDLDLSTIDETQEHYGDAPKINR----EESVLD 302 Query: 297 SETSQPE-SAVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHD 350 S+T+Q N P ++ ++ + E + +Y + H Sbjct: 303 SDTNQVAMGVPGSLSNRPPIAANQMTNGAEENRSPEALSKHSESKRDYSYDRSVQHIQHP 362 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 + ++RL++AVV+N+ A + ++ +++ A GI+++RGD +T++ Sbjct: 363 GFAVKRLNVAVVLNQNA-------PALKNWKPEQTTQLTALLNNAAGIDAQRGDNLTLSL 415 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 ++F+ + + + D +V+ + + LL L +R L A Sbjct: 416 LNFVPQAVPVEPVIPLWKDD-------SVLAWVRLIGCGLLALLLLFFVVRPLMKRLTAV 468 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 + V P A++ + + + +L S+ + K L+ Sbjct: 469 RAPV-------ITPEPEAISEPWIAVPEEERKNVDLPSLPGDDSLPSQSSGLEVKLEFLQ 521 Query: 531 LLHMIEINEERFAKILRKWARSEI 554 L M + + R A++LR+W S Sbjct: 522 KLAMSDTD--RVAEVLRQWITSNE 543 >gi|255264100|ref|ZP_05343442.1| flagellar M-ring protein FliF [Thalassiobium sp. R2A62] gi|255106435|gb|EET49109.1| flagellar M-ring protein FliF [Thalassiobium sp. R2A62] Length = 531 Score = 335 bits (858), Expect = 2e-89, Method: Composition-based stats. Identities = 136/550 (24%), Positives = 241/550 (43%), Gaps = 28/550 (5%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + ++ +K SLG +I + + + ++P Y LY LE S + Sbjct: 1 MQNIISVWK---SLGARNQIISGLASVAVFLAVLFMTRVASTPTYALLYSGLESSASGEV 57 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 +L + + I G SI V S+ + R+ LA+ GLP + GYEL D + FG T Sbjct: 58 IASLEAQSAAYEIR--GDSIFVDSAKRDQLRMTLASAGLPKPTVQ-GYELLDTLTGFGTT 114 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-INP 182 S M + RA EGE+ARTI + I ARVHI F++ A TASV + + Sbjct: 115 SQMFDAAYWRAKEGELARTIVATPAIRTARVHISNGTSRPFQRNQA-TTASVTVNTGVAG 173 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242 + +A+++LVA+AV + DV ++D L++ + + ++ I+ Sbjct: 174 LTTQQIKALQYLVASAVAQMSPEDVAIIDDQRGLVSGAGLASDPTTRTSETE-----NIK 228 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 NI + L A +G N + + D + I E DP+S+V S ++ S T Q Sbjct: 229 RNIERLLEARVGFGNAVVELNVQRTTDIETILERRVDPNSRVAISTET-EERSTSSTDQN 287 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 +VTV N+P D S + E+ N+E++ T +++R+++AV+ Sbjct: 288 GGSVTVASNLPD-GDAAADSGTSNSQNSESRERVNFEMSETQREVTRGPGQVQRITVAVL 346 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 V+ + G + + + + LA++ ++V++A G + RGD ITI S+ F L G Sbjct: 347 VDGVNGLDSDGNTTIEPRSEEELADLRELVASAIGFDENRGDKITIRSLAF--EPLPVEG 404 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482 TV S ++ +++ + V + LGL +R + A + + S Sbjct: 405 TVAGSSKNLF--DSLNLMSLIQIAVAASVAIVLGLFVVRPVLMSGRAYRPALIDDSGP-- 460 Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542 + G + + ++ L ++ + + + +RL +IE +E Sbjct: 461 ------LLDGEI-DTSLGLSATEIGEMKNVDGAVQVADPSMPNDPVVRLRALIEERQEET 513 Query: 543 AKILRKWARS 552 ILR W + Sbjct: 514 VDILRDWIAA 523 >gi|258404702|ref|YP_003197444.1| flagellar M-ring protein FliF [Desulfohalobium retbaense DSM 5692] gi|257796929|gb|ACV67866.1| flagellar M-ring protein FliF [Desulfohalobium retbaense DSM 5692] Length = 504 Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 117/467 (25%), Positives = 210/467 (44%), Gaps = 29/467 (6%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 + R R L L V L+ + +F Y LY + + + + L Sbjct: 17 SLIQRIQDWPRRRKLSLLVVGLLCVAVFTFLILQARVADYQLLYADMTQQEASSVVDWLQ 76 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 ++N+ +++ D GSSI VP+ V K R+ LA GLP G+E+FD+ FG+T F Q+ Sbjct: 77 DSNVSYQLRDQGSSIYVPAGQVYKTRLDLAGDGLPQ-GQGVGFEIFDQ-QRFGVTQFTQQ 134 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--AINPSVYK 186 + RAL+GE+AR++ +++ + +ARVH+V+P+ R+ + ASV++ Sbjct: 135 VNYQRALQGELARSVATLTSVQSARVHLVLPERQFLREQQEKAKASVVVEFAPGQGLDSN 194 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEM 243 + I LV+ +V + +VTV+DS G +L+ E E + I + L QA++ + E Sbjct: 195 QIKGIIRLVSGSVEGMAANNVTVVDSQGNVLSGGEEEDSGSPISPEKLEYKQAVEGQYEQ 254 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 L G + V A ++ ++ E +YDPDS V RS + S+ Sbjct: 255 RAQALLDRVFGPNKALVRVTAAIDFVSKHTTEELYDPDSIVPRSEKTSE----------- 303 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 N + + + + + E NYEI+ T ++ LS+AV+V Sbjct: 304 ------SNSGTTAREETEGNAGGQRSSESTETVNYEISRTVNEITKTMGGVKNLSVAVLV 357 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 + L A +G + + ++VS+A G+ RGD+I + +M E +SGT Sbjct: 358 GQQFLQNKGNGGAAEGHS---VESLQRLVSSALGLQPDRGDSIEVVAMPVQEQAGLSSGT 414 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 + + + + + +G +L FL + + + + + Sbjct: 415 SANAGFSL--YDYLPFVKYGLIALGFILAYFLLVRPVLQTFRSEVTE 459 >gi|293408353|ref|ZP_06652192.1| flagellar M-ring protein FliF [Escherichia coli B354] gi|291471531|gb|EFF14014.1| flagellar M-ring protein FliF [Escherichia coli B354] Length = 548 Score = 334 bits (856), Expect = 3e-89, Method: Composition-based stats. Identities = 130/564 (23%), Positives = 246/564 (43%), Gaps = 41/564 (7%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L Q F+ + + L+ + V + + + + Y +LY + E V++I Sbjct: 8 LTQAFPAFRLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQI 67 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L + +RI I VP + K R+ LAA+G+ + SGYEL DK G + Sbjct: 68 VTVLDGEKLSYRIDPQSGQILVPEDELSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSS 126 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINP 182 F+Q + R+LEGE+A++I S+ + +ARVH+ + + SF + +ASV++R Sbjct: 127 QFVQNVRYKRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYG 186 Query: 183 SVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQA 236 + AI HLV+ ++P L V+V+D G LLT A E K I++ Sbjct: 187 AKLNMDQVNAIVHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKD 246 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 IQ + ++ L + +G N+R +V+ +L++ T + Y K+ R ++ Sbjct: 247 IQDKTRASVANVLDSLVGSGNYRVSVMPDLDLSTIDETQEHYGDAPKINR----EENVLD 302 Query: 297 SETSQPE-SAVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHD 350 S+T+Q N P V+ ++ + E + +Y + H Sbjct: 303 SDTNQVAMGVPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHP 362 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 + ++RL++AVV+N+ A + ++ +++ A GI+ +RGD +T++ Sbjct: 363 GFAVKRLNVAVVLNQNA-------PALKNWKPEQTTQLTALLNNAAGIDVQRGDNLTLSL 415 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 ++F+ + + D + A V L+ LL+ F+ ++RL + Sbjct: 416 LNFVPQVAPVEPVIPLWKDDCV---LAWVRLIGCGLLALLLLFFVVRPVMKRLTAVRAP- 471 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 +++P P + + MP + + + +L S+ + K L+ Sbjct: 472 --------VITPEPEAVSEPWIAMPEEE--RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQ 521 Query: 531 LLHMIEINEERFAKILRKWARSEI 554 L M + + R A++LR+W S Sbjct: 522 KLAMSDTD--RVAEVLRQWITSNE 543 >gi|260574387|ref|ZP_05842391.1| flagellar M-ring protein FliF [Rhodobacter sp. SW2] gi|259023283|gb|EEW26575.1| flagellar M-ring protein FliF [Rhodobacter sp. SW2] Length = 533 Score = 334 bits (856), Expect = 3e-89, Method: Composition-based stats. Identities = 137/555 (24%), Positives = 240/555 (43%), Gaps = 27/555 (4%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + L + + + R RI+++ + I + + + +R N+P LY L+ + Sbjct: 1 MQNLFSLWSALDA--RRRIIVIGATIAMFLAVLGLSRM-ANTPSMALLYAGLDNRAAGEV 57 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 AL + + + + G SI V + R+ LA +GLP+ + +GYEL D ++ FG T Sbjct: 58 VAALDQRGVAYEVK--GDSILVDVTQRDSLRMTLATEGLPTMGA-AGYELLDGLSGFGTT 114 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 S M + RA EGE+ARTI + I AARVHI FR+ + + Sbjct: 115 SQMFDAAYWRAKEGELARTILANPQIRAARVHIAQAPAQPFRRDVLATASVTVTTTTGSL 174 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEM 243 A+A++HL+AAAV + DV+V+D+ G L+ A + Q E+ Sbjct: 175 PPLQAKALKHLIAAAVAGMQPEDVSVIDTVGGLIMAADDNTLTGNGG----QDRAAELRT 230 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 N+ + LAA +G V ++ + + I E +DP +V S ++ S ++P Sbjct: 231 NVERLLAARVGPGKSVVEVSVDVVTERESITERKFDPQGRVPISTDATEKT--SSATEPS 288 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 VTV N+P T + E +N+E++ S + +LS+AV+V Sbjct: 289 GDVTVASNLPQ--GNAAAGGNGQSQTSETRELTNFEVSETSRELLRVPGAVRKLSVAVLV 346 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 + ++T G + Q + + LA + ++V++A G++ RGD +T+ S+ F + Sbjct: 347 DGLQVTAADGTISWQPRPEEELAVLRELVASAVGLDETRGDVLTLKSLAFEPLAEAGTLA 406 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNIDDAKKGEVGGKSILSP 482 F DI ++I V V L++ + L L G ++ + Sbjct: 407 EASMFADIGPIDLMSMIQLAVLAVVALVLGLFVIRPVLTNLPRRMAELPGPGAQLALPNG 466 Query: 483 PPISSAVTTGLMPNDNIALD--SSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 + V TG + +D L D+ + ++ RL +IE + Sbjct: 467 AGGENRVLTGEI-DDGFTLPTMGFGDDVAEDEADANDPMS---------RLRRLIEERQA 516 Query: 541 RFAKILRKWARSEIE 555 +ILR W +E E Sbjct: 517 ESVEILRGWMETEEE 531 >gi|330445366|ref|ZP_08309018.1| flagellar M-ring protein FliF [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489557|dbj|GAA03515.1| flagellar M-ring protein FliF [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 582 Score = 334 bits (856), Expect = 3e-89, Method: Composition-based stats. Identities = 100/553 (18%), Positives = 214/553 (38%), Gaps = 29/553 (5%) Query: 14 GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73 +L R +IL + + + L + ++ P L E ++ I + I+ Sbjct: 45 LGNLDLLRQVILVLSVAICVALIVLVTMWIKEPEMRPLGT-YETEELIPILDHFDQKKIE 103 Query: 74 FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 +++ +G++I VP+ ++ L GL ++ + G ++ + FG++ ++ Sbjct: 104 YQL--DGNTIRVPAEEYSAIKLDLTRSGL-NTRTVEGDDILLQDMGFGVSQRLESERLKL 160 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEAI 191 + E ++AR I+ IS + A+V + P F + TA+V + + ++I Sbjct: 161 SRERQLARAIEQISQVRKAQVLLATPKQSVFVRHNQEATATVFLTLSSGGSLGQQEVDSI 220 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKAL 249 +VA AVP L VTV D G+LL++ + + K + + + + I+ L Sbjct: 221 VDMVATAVPGLRPTRVTVTDQHGRLLSSGTEDPSATAKRKEYELERKQEQSLREKIDAIL 280 Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309 LG+ N+ S V ++ + YDP + RS +D T Sbjct: 281 MPVLGLGNYTSQVDVAMDFSALEETRKRYDPATAATRSEFTLEDINGGNT--VSGIPGAL 338 Query: 310 QNMPHVSDRKV-------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 N P V + + +E NYE++T + R +++V Sbjct: 339 SNQPPVDSAIPQNVKDMQSGSGGADGSVHRESTRNYELDTTISHKRAQTGTIARQTVSVA 398 Query: 363 VNKGRLTE-VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 V+ +T+ G ++ +A+I +++ G + RGD + + S+ F + + Sbjct: 399 VDYKTITDPATGDVTRVPVSEAEIAKIRRLLMGGIGFSEARGDLLEVLSVPFALPESQVA 458 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR-RLHNIDDAKKGEVGGKSIL 480 + + + V ALV +V +++ + L D E G + Sbjct: 459 ADLPIWENPNFNNWVRWVAAALVIIVVIMVLVRPAMRKLLYPNQAPDGTPLDENGMPILA 518 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 + + L + L SS+ D+ + R+ + + +++ + Sbjct: 519 NTTDSVGLIGAELDGGEGFELSSSSLDLPNLHRD----------EDLLKAVRALVDNEPD 568 Query: 541 RFAKILRKWARSE 553 A++++ W + Sbjct: 569 LAAQVVKSWVNED 581 >gi|326389483|ref|ZP_08211050.1| flagellar M-ring protein FliF [Thermoanaerobacter ethanolicus JW 200] gi|325994488|gb|EGD52913.1| flagellar M-ring protein FliF [Thermoanaerobacter ethanolicus JW 200] Length = 506 Score = 334 bits (856), Expect = 3e-89, Method: Composition-based stats. Identities = 119/567 (20%), Positives = 228/567 (40%), Gaps = 82/567 (14%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 +QL F+ + ++ I+A ++ + I L + + VN P+Y LY L + D Sbjct: 7 NFREQLTNFWNKFDKKQKIQLGIIAILLFIGISLLV---YIVNRPNYVVLYSDLSIKDAG 63 Query: 62 RISVALSEA-NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK-VNS 119 + L I ++IS++G++I VP+ + R+ LA +G+P G+ D NS Sbjct: 64 AVVEKLKTEFKIPYKISNDGTTILVPAQYKDEVRMKLATEGIPQG----GFSFQDAMNNS 119 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARPTASVMI 177 T + + L+ EI ++++I G+ A V+IV+PD +F + TA+VM+ Sbjct: 120 LATTDQERRQKYLYFLQNEIQNSLKTIDGVQDAIVNIVVPDQNAFVLSNTTNQATAAVML 179 Query: 178 RAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIV 234 + I V+ +V L +VTV+D+ GK+LTA ++ ++ Sbjct: 180 TLKPGVTLSSSQVKGIIDFVSKSVEGLKPENVTVIDNNGKILTAESDTTAENANTQFALQ 239 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIR 289 + +Q +++ ++ L G N LN D + I Y P + + RSI+ Sbjct: 240 KKVQEDLQNSLQTLLEQMFGPGNVVVRANVTLNFDKKTQDTIEYLPVQGNDNKGIVRSIQ 299 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 K+ ++ +Q S+ N P V+ + + E NYEIN + Sbjct: 300 ELKE--KATGTQGGSSPGTASNNPPVAST---TGNGTSDYSRTETTINYEINQIKTSLVQ 354 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT---I 406 K+E +S+AVVVN Q +S +I +V+ A G GD+ + Sbjct: 355 AQGKIESISVAVVVN-------------QNLNNSMKQQIADLVTKAAG-----GDSLVKV 396 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 ++ + F ++ L + Q + + ++ ALV G L+ + ++ ++ Sbjct: 397 SVQGIQFNQD-LLKTMQQQAKVSKGVPVYVWAILAALVLGGGLFLI---MMRRKKKETSL 452 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 A++ + + P I+ + Sbjct: 453 TTAEQEVLATVEPIEP---------------------------------IEEIDFSEKDE 479 Query: 527 SDLRLLHMIEINEERFAKILRKWARSE 553 ++ +I+ E +++R W E Sbjct: 480 KKKQIERLIKEKPELVVQVIRTWLNEE 506 >gi|59889767|emb|CAH19122.1| Lateral flagellar M-ring protein (FliF-like) [Escherichia coli] gi|284920031|emb|CBG33087.1| lateral flagellar M-ring protein (FliF-like) [Escherichia coli 042] Length = 548 Score = 334 bits (856), Expect = 3e-89, Method: Composition-based stats. Identities = 131/564 (23%), Positives = 248/564 (43%), Gaps = 41/564 (7%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L Q F+ + + L+ + V + + + + Y +LY + E V++I Sbjct: 8 LTQAFPAFRLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQI 67 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L + +RI I VP + K R+ LAA+G+ + SGYEL DK G + Sbjct: 68 VTVLDGEKLSYRIDPQSGQILVPEDALSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSS 126 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINP 182 F+Q + R+LEGE+A++I S+ + +ARVH+ + + SF + +ASV++R Sbjct: 127 QFVQNVRYKRSLEGELAQSIMSLDSVESARVHLALNEESSFVVSDEPQNSASVVVRLHYG 186 Query: 183 SVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQA 236 + AI HLV+ ++P L V+V+D G LLT A E K I++ Sbjct: 187 AKLNMDQVNAIVHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKD 246 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 IQ + ++ L + +G N+R +V+ +L++ T + Y K+ R ++ Sbjct: 247 IQDKTRASVANVLDSLVGTGNYRVSVMPDLDLSTIDETQEHYGDAPKINR----EENVLD 302 Query: 297 SETSQPE-SAVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHD 350 S+T+Q N P V+ ++ + E + +Y + H Sbjct: 303 SDTNQVAMGVPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHP 362 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 + ++RL++AVV+N+ A + A++ +++ A GI+ +RGD +T++ Sbjct: 363 GFAVKRLNVAVVLNQNA-------PAMKNWKPEQTAQLTALLNNAAGIDVQRGDNLTLSL 415 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 ++F+ + + + D + A V L+ LL+ F+ ++RL + Sbjct: 416 LNFVPQAVPVEPIIPLWKDDSV---LAWVRLIGCGLLALLLLFFVVRPVMKRLTAVRAP- 471 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 +++P P + + MP + + + +L S+ + K L+ Sbjct: 472 --------VITPEPEAVSEPWIAMPEEE--RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQ 521 Query: 531 LLHMIEINEERFAKILRKWARSEI 554 L M + + R A++LR+W S Sbjct: 522 KLAMSDTD--RVAEVLRQWITSNE 543 >gi|59712459|ref|YP_205235.1| flagellar MS-ring protein [Vibrio fischeri ES114] gi|59480560|gb|AAW86347.1| flagellar M ring protein FliF [Vibrio fischeri ES114] Length = 577 Score = 334 bits (856), Expect = 3e-89, Method: Composition-based stats. Identities = 104/552 (18%), Positives = 216/552 (39%), Gaps = 36/552 (6%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 L R IL+L+ I V +++ + F+V P L V E ++ ++ L Sbjct: 48 GNLDLLRQVILVLSVSICVALIVMLF--FWVQEPEMRPLGV-YETDELIQVLDHLDAQKA 104 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 ++++ +G++I VP+S K + L+ GL + + G ++ + FG++ +++ Sbjct: 105 EYKL--DGNTILVPASEFSKMNLDLSRAGL-NKAVGEGDDILLQDMGFGVSQRLEQERLK 161 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEA 190 + E ++A T + + I A+V + MP F + +A+V + ++ K ++ Sbjct: 162 LSRERQLASTFEQMRPIRKAQVLLAMPKQSVFVRHNQEASATVFLTMRMGAMLKQEEVDS 221 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKA 248 I +VA+AVP + VTV D G+LL++ + + K + + + + I+ Sbjct: 222 IVDMVASAVPGMKPTRVTVTDQHGRLLSSGTQDPMAMAHRKEQELERKQEQSLRDKIDAI 281 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308 L LG+ N+ + V ++ + +DP + RS +D + Sbjct: 282 LIPILGLGNYTAQVDVSMDFSAVEQTRKQFDPQTPSTRSEYTLEDYNNG--NVIAGVPGA 339 Query: 309 EQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 N P V + + KE N+E++T + R +++V Sbjct: 340 LSNQPPVDSAIPQDIAELKDGSVLGQGSVHKEATRNFELDTTISHERKQTGTVARQTVSV 399 Query: 362 VV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 V + + G + L +I +I+ + G+N +RGD + + S+ F + Sbjct: 400 AVKERQSVNPETGEVTYTPISAAELDKIRQIIIGSVGLNEQRGDLLNVLSVKFAIEEQPI 459 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 + V + + + ALV + L+ L A+ +L + A+ + Sbjct: 460 AIDVPIWENPNFNDWVKWLAGALVIIAVILV---LVRPAMNKLLFPNQAEDEALAN---- 512 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 + G M LD + S N + + + ++ E Sbjct: 513 -----AERNAEGEMGLIGSDLDGDGFEFGSG----IDLPNLHKDEDLLKAVRALVANEPE 563 Query: 541 RFAKILRKWARS 552 A+++R W Sbjct: 564 LAAQVVRNWVSE 575 >gi|163732487|ref|ZP_02139932.1| flagellar M-ring protein FliF, putative [Roseobacter litoralis Och 149] gi|161393847|gb|EDQ18171.1| flagellar M-ring protein FliF, putative [Roseobacter litoralis Och 149] Length = 504 Score = 333 bits (855), Expect = 3e-89, Method: Composition-based stats. Identities = 138/518 (26%), Positives = 226/518 (43%), Gaps = 20/518 (3%) Query: 43 VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL 102 +P+ LY LE + AL + F + G SI V SS + R+ LA++GL Sbjct: 2 ATAPNMTLLYAGLENGAAGDVVTALEQRGAVFEVR--GGSIFVDSSQRDELRMTLASEGL 59 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162 P++S+ GYEL D ++ FG TS M + RA EGE+ARTI S I ARVHI Sbjct: 60 PANSTR-GYELLDTLSGFGTTSQMFDAAYWRAKEGELARTIVSSPHIAMARVHIASTGSN 118 Query: 163 SFRKIGARPTASVMIRAINPS-VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE 221 F++ G P AS+ + + + +AIR LV++AV L DV V+D+ G L+ + Sbjct: 119 PFQR-GVTPKASISVTPSGAAITPQQGKAIRFLVSSAVAGLASEDVAVIDANGALIGNAD 177 Query: 222 MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD 281 +G ++ + + L A +G N V + +++ IRE +DP+ Sbjct: 178 EVAPTIGGEDKA-----DVLKARVQRLLEARVGFGNSVVEVSVDTVTESESIRERTFDPE 232 Query: 282 SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEIN 341 S+V S ++ S + VTV N+P + S ++ E+ NYE++ Sbjct: 233 SRVAISTDT-EERNTSSSEAGGGDVTVASNLPD--EDGAGGENSSSQNNETRERVNYEVS 289 Query: 342 TKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR 401 + ++R+++AV+VN+ LT+ G + ++ L + +V++A G + Sbjct: 290 ETEREVLREPGAIKRVTVAVLVNEMTLTDEAGEQTVAPRDENELEALRDLVASAVGFDEA 349 Query: 402 RGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461 RGD ITI SM L + ++S V++A+ + L+ LGL +R Sbjct: 350 RGDIITIKSMGLQSVPLQGTAAG----TSLMSNFNIDVMSAVQMAILALVTLILGLFVVR 405 Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN--QDIFSHSRNLQS-R 518 L + + + G + D+ L D L Sbjct: 406 PLLSRNGLNDAPAIAALPAAEGQTDGQGLDGEIDGDDFQLPDLPVISDFGDAGGELPDLN 465 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIED 556 I S +S RL MI ++ +ILR W + E Sbjct: 466 IGSGMSDDPVDRLRTMIGERQDETVEILRSWLEDKEES 503 >gi|88597235|ref|ZP_01100470.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni 84-25] gi|88190296|gb|EAQ94270.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni 84-25] Length = 560 Score = 333 bits (855), Expect = 3e-89, Method: Composition-based stats. Identities = 120/566 (21%), Positives = 231/566 (40%), Gaps = 28/566 (4%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEV 57 +L Q+ Q +++ T + RI+I AS+I+V L A F + + Y L + Sbjct: 5 NMLHQIGQLYQNLTR--KQRIVIAASIIVVVGFLVFLALFHGSGSNANNGYAVLVENVSP 62 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 S I L + NI +++ + I VP V + R+ +A++GL S G+E FD Sbjct: 63 SSSAAIVAKLEQNNIPYKLESE-NKILVPQDQVYRQRMFIASEGLIKDSR-VGFEAFD-T 119 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 +FG T+ Q++ RA+EGE+ARTI+++ I +A VHI P F + PTASV++ Sbjct: 120 QAFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASVVV 179 Query: 178 RAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIV 234 K + I+++V+AAVP L +V + D +G L E E +++ + Sbjct: 180 NVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIKFK 239 Query: 235 QAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293 + +E I + LA F G+D + +V + + Q+ + +YDP+ V L+++ Sbjct: 240 SDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLNEE 299 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 + + + N+ V + ++ K + +N E++ T Sbjct: 300 RTGRKDPEIQGVPGAVSNIGPV--EGLDNKGQIDTYKKNQVTTNNELSKTITNTKKQFAT 357 Query: 354 LERLSIAVVVNKGRL----TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 + R S AV ++ +S LA + IV ++ RGD++ + Sbjct: 358 VLRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEELASVESIVKNTINFSATRGDSVVVQ 417 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 ++ F + V+ +R I + + + +L+ + Sbjct: 418 NLPFHRESIRVESKVKT----FYNRFVEPFIPPVKYFIAAILLFIFYKKVIAPFTQKML- 472 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 + + + P + N A + + + I V + Sbjct: 473 -EDVAAQEEMQQGPNAVLDDAEDALEKFNAARKKVEEQLGFGDNFNEDSIQYEVLLE--- 528 Query: 530 RLLHMIEINEERFAKILRKWARSEIE 555 +L ++ E A +L+ +++ E Sbjct: 529 KLRGLVSDKGEEIAALLQNLIQNDSE 554 >gi|229896276|ref|ZP_04511446.1| Flagellar M-ring protein fliF [Yersinia pestis Pestoides A] gi|229701199|gb|EEO89228.1| Flagellar M-ring protein fliF [Yersinia pestis Pestoides A] Length = 475 Score = 333 bits (855), Expect = 4e-89, Method: Composition-based stats. Identities = 106/486 (21%), Positives = 199/486 (40%), Gaps = 60/486 (12%) Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 G+EL D+ FG++ F ++I RALEGE++RTI ++ ++ RVH+ MP Sbjct: 13 RKVGAVGFELLDQE-KFGISQFSEQINYQRALEGELSRTIGTLGPVLNVRVHLAMPKPSL 71 Query: 164 FRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE 221 F + PTASV + AI ++V+++V L G+VTV+D TG+LLT ++ Sbjct: 72 FVREQKSPTASVTLALQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLLTQSD 131 Query: 222 -MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP 280 R++ L +++ + I LA +G N + V A+++ +++ + Y P Sbjct: 132 SAGRDLNASQLKFTSEVENRYQRRIENILAPMVGNGNVHAQVTAQVDFASREQTDEEYKP 191 Query: 281 ----DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV---PLP---------- 323 + RS ++S Q T+ N P V+ P P Sbjct: 192 NQAANQGAVRSQQVSTSEQLGGTNV-GGVPGALSNQPPVAPIAPIEIPQPAGAAANNAAP 250 Query: 324 ----------------RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367 ++ + + ++ +N+E++ T ++RLS+AVVVN Sbjct: 251 ANTAATANANTTATAAKASSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVNYTS 310 Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVS 427 LA++ + A G ++ RGDT+ + + F + ++ Sbjct: 311 DKAGK----PIALSKDQLAQVESLTREAMGFSTVRGDTLNVVNTPFTASDDTRGSSLPFW 366 Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISS 487 F ++NA +L+ L+ L LR + + S+ + + Sbjct: 367 QQQSF---FDQLLNAGRYLLILLVAWILWRKLLRPMLAKKQV--ADKAAASVNNIVQTAQ 421 Query: 488 AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILR 547 A T + +AL N Q R+++ V Q R+ + + + A ++R Sbjct: 422 AAETVKQSKEELALRKKN----------QQRVSAEVQAQ---RIRELADKDPRVVALVIR 468 Query: 548 KWARSE 553 +W ++ Sbjct: 469 QWMSND 474 >gi|170682472|ref|YP_001742357.1| flagellar MS-ring protein [Escherichia coli SMS-3-5] gi|170520190|gb|ACB18368.1| lateral flagellar M-ring protein LfiF [Escherichia coli SMS-3-5] Length = 548 Score = 333 bits (854), Expect = 4e-89, Method: Composition-based stats. Identities = 128/564 (22%), Positives = 246/564 (43%), Gaps = 41/564 (7%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L Q F+ + + L+ + V + + + + Y +LY + E V++I Sbjct: 8 LTQAFPAFRLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQI 67 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L + +RI I VP + K R+ LAA+G+ + SGYEL DK G + Sbjct: 68 VTVLDGEKLSYRIDPQSGQILVPEDELSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSS 126 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINP 182 F+Q + R+LEGE+A++I S+ + +ARVH+ + + SF + +ASV++R Sbjct: 127 QFVQNVRYKRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYG 186 Query: 183 SVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQA 236 + AI HLV+ ++P L V+V+D G LLT A E K I++ Sbjct: 187 AKLNMDQVNAIVHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKD 246 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 IQ + ++ L + +G N+R +V+ +L++ + Y K+ R ++ Sbjct: 247 IQDKTRASVANVLDSLVGSGNYRVSVMPDLDLSNIDETQEHYGDAPKINR----EENVLD 302 Query: 297 SETSQPE-SAVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHD 350 S+T+Q N P ++ ++ + E + +Y + H Sbjct: 303 SDTNQVAMGVPGSLSNRPPIAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHP 362 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 + ++RL++AVV+N+ A + ++ +++ A GI+ +RGD +T++ Sbjct: 363 GFAVKRLNVAVVLNQNA-------PALKNWKPEQTTQLTALLNNAAGIDVQRGDNLTLSL 415 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 ++F+ + + + D + A V L+ LL+ F+ ++RL + Sbjct: 416 LNFVPQAVPVEPIIPLWKDDSV---LAWVRLIGCGLLALLLLFFVVRPVMKRLTAVRAP- 471 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 +++P P + + MP + + + +L S+ + K L+ Sbjct: 472 --------VITPEPEAVSEPWIAMPEEE--RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQ 521 Query: 531 LLHMIEINEERFAKILRKWARSEI 554 L M + + R A++LR+W S Sbjct: 522 KLAMSDTD--RVAEVLRQWITSNE 543 >gi|197334317|ref|YP_002156678.1| flagellar M-ring protein FliF [Vibrio fischeri MJ11] gi|197315807|gb|ACH65254.1| flagellar M-ring protein FliF [Vibrio fischeri MJ11] Length = 577 Score = 333 bits (854), Expect = 5e-89, Method: Composition-based stats. Identities = 103/552 (18%), Positives = 216/552 (39%), Gaps = 36/552 (6%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 L R IL+L+ I V +++ + F+V P L V E ++ ++ L Sbjct: 48 GNLDLLRQVILVLSVSICVALIVMLF--FWVQEPEMRPLGV-YETDELIQVLDHLDAQKA 104 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 ++++ +G++I VP+S K + L+ GL + + G ++ + FG++ +++ Sbjct: 105 EYKL--DGNTILVPASEFSKMNLDLSRAGL-NKAVGEGDDILLQDMGFGVSQRLEQERLK 161 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEA 190 + E ++A T + + I A+V + MP F + +A+V + ++ K ++ Sbjct: 162 LSRERQLASTFEQMRPIRKAQVLLAMPKQSVFVRHNQEASATVFLTMRMGAMLKQEEVDS 221 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKA 248 I +VA+AVP + VTV D G+LL++ + + K + + + + I+ Sbjct: 222 IVDMVASAVPGMKPTRVTVTDQHGRLLSSGTQDPMAMAHRKEQELERKQEQSLRDKIDAI 281 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308 L LG+ N+ + V ++ + +DP + RS +D + Sbjct: 282 LIPILGLGNYTAQVDVSMDFSAVEQTRKQFDPQTPSTRSEYTLEDYNNG--NVIAGVPGA 339 Query: 309 EQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 N P V + + KE N+E++T + R +++V Sbjct: 340 LSNQPPVDSAIPQDIAELKDGSVLGQGSVHKEATRNFELDTTISHERKQTGTVARQTVSV 399 Query: 362 VV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 + + + G + L +I +I+ + G+N +RGD + + S+ F + Sbjct: 400 AIKERQSVNPETGEVTYTPISAAELDKIRQIIIGSVGLNEQRGDLLNVLSVKFAIEEQPI 459 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 + V + + + ALV + L+ L A+ +L + A+ + Sbjct: 460 AIDVPIWENPNFNDWVKWLAGALVIIAVILV---LVRPAMNKLLFPNQAEDEALAN---- 512 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 + G M LD + S N + + + ++ E Sbjct: 513 -----AERNAEGEMGLIGSDLDGDGFEFGSG----IDLPNLHKDEDLLKAVRALVANEPE 563 Query: 541 RFAKILRKWARS 552 A+++R W Sbjct: 564 LAAQVVRNWVSE 575 >gi|258621104|ref|ZP_05716138.1| flagellar M-ring protein [Vibrio mimicus VM573] gi|258626177|ref|ZP_05721025.1| flagellar M-ring protein [Vibrio mimicus VM603] gi|262170880|ref|ZP_06038558.1| flagellar M-ring protein FliF [Vibrio mimicus MB-451] gi|258581532|gb|EEW06433.1| flagellar M-ring protein [Vibrio mimicus VM603] gi|258586492|gb|EEW11207.1| flagellar M-ring protein [Vibrio mimicus VM573] gi|261891956|gb|EEY37942.1| flagellar M-ring protein FliF [Vibrio mimicus MB-451] Length = 579 Score = 333 bits (854), Expect = 5e-89, Method: Composition-based stats. Identities = 115/559 (20%), Positives = 236/559 (42%), Gaps = 36/559 (6%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 + F L R +L+L+ I V +++ + F+V P L E ++ + L Sbjct: 42 MDFTVGDLDLLRQVVLVLSISICVALIVMLF--FWVREPDMRPLGA-YETEELIPVLDYL 98 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + +++ +G++I VP S ++ + GL + +G E+ + FG++ ++ Sbjct: 99 DQQKQQYKL--DGNTILVPVSDYNSLKLSMVRAGL-NQERQAGDEILMQDMGFGVSQRLE 155 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187 + + E ++A+ I+ + I ARV + +P F + +ASV + + K Sbjct: 156 QERLKLSRERQLAKAIEEMRQINKARVLLALPKQSVFVRQNQEASASVFLSLRTGANLKQ 215 Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE--IEM 243 +A+ +VA+AVP + VTV D G+LL++ + + Q E + Sbjct: 216 EEIDAVVDMVASAVPGMKPSRVTVTDQHGRLLSSGSQDPVSAARRKEQELEKQQEEALRG 275 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE----- 298 I+ L LG+ N+ + V EL+ + V+DP++ RS +D Sbjct: 276 KIDSVLIPILGLGNYTAQVDIELDFSAVEQTRKVFDPNTPATRSEYTLEDYNNGNVVAGV 335 Query: 299 ----TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 ++QP + ++ Q++ + D V S+ KE N+E++T + + Sbjct: 336 PGALSNQPPADASIPQDVAQMKDGSVMGQGSV----HKEATRNFELDTTISHERKQSGVV 391 Query: 355 ERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 R ++AV V ++ + G ++ L I +I+ G + RGD + + SM F Sbjct: 392 NRQTVAVAVKSRSNVNSETGEVTYTPLSEADLNSIRQILIGTVGYSENRGDLLNVLSMPF 451 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 E ++ V + + + +ALV ++ L++ A+++L N + Sbjct: 452 AEPEVEQIADVPIWEHPNFNDWIRWLASALVIIIVVLVLV---RPAMKKLINPAADSDDQ 508 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 + G PI + T L+ +D +DS F +L N + + + Sbjct: 509 MYGP---DGMPIGADGETSLIGSD---IDSGELFEFGSGIDLP---NLHKDEDVLKAVRA 559 Query: 534 MIEINEERFAKILRKWARS 552 ++ E A++++ W ++ Sbjct: 560 LVANEPELAAQVVKNWMQN 578 >gi|254228436|ref|ZP_04921862.1| flagellar M-ring protein FliF [Vibrio sp. Ex25] gi|262393588|ref|YP_003285442.1| flagellar M-ring protein FliF [Vibrio sp. Ex25] gi|47080313|dbj|BAD18882.1| basal body protein [Vibrio alginolyticus] gi|151939024|gb|EDN57856.1| flagellar M-ring protein FliF [Vibrio sp. Ex25] gi|262337182|gb|ACY50977.1| flagellar M-ring protein FliF [Vibrio sp. Ex25] Length = 580 Score = 333 bits (854), Expect = 5e-89, Method: Composition-based stats. Identities = 108/554 (19%), Positives = 239/554 (43%), Gaps = 36/554 (6%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 L R +L+L+ I V +++ + F+V P L E ++ + L + I Sbjct: 47 GDLDLLRQVVLVLSISICVALIVMLF--FWVKEPEMRPLGA-YETEELIPVLDYLDQQKI 103 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 ++++ +G++ISV SS ++ + G+ + ++ +G ++ + FG++ +++ Sbjct: 104 NYKL--DGNTISVESSEYNSIKLGMVRSGV-NQATEAGDDILLQDMGFGVSQRLEQERLK 160 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEA 190 + E ++A+ I+ + + ARV + +P F + +ASV + + K ++ Sbjct: 161 LSRERQLAQAIEEMKQVRKARVLLALPKHSVFVRHNQEASASVFLTLSTGTNLKQQEVDS 220 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKA 248 I +VA+AVP + +TV D G+LL++ + K + ++ + + I+ Sbjct: 221 IVDMVASAVPGMKTSRITVTDQHGRLLSSGSQDPASAARRKEQELERSQEQALREKIDSV 280 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------T 299 L LG N+ + V +++ + +DP++ RS +D + Sbjct: 281 LLPILGYGNYTAQVDIQMDFSAVEQTRKRFDPNTPATRSEYALEDYNNGNMVAGIPGALS 340 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 +QP + ++ Q++ + D V S+ +KE N+E++T + R ++ Sbjct: 341 NQPPADASIPQDVAQMKDGSVMGQGSV----RKESTRNFELDTTISHERKQTGTVARQTV 396 Query: 360 AVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 +V + ++ ++ G +S + I +++ G + RGD + + S+ F E + Sbjct: 397 SVAIKDRRQVNPDTGEVTYTPMSESEINAIRQVLIGTVGFDQGRGDLLNVLSVKFAEPEA 456 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 + S +ALV +V L++ A+++L N + E+ G Sbjct: 457 EQLEEPPIWEHPNFSDWVRWFASALVIIVVVLVLV---RPAMKKLLNPTSDDEDEMYGPD 513 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 L PI + T L+ +D ++SS F S +L N + + + ++ Sbjct: 514 GL---PIGADGETSLIGSD---IESSELFEFGSSIDLP---NLHKDEDVLKAVRALVANE 564 Query: 539 EERFAKILRKWARS 552 E A++++ W Sbjct: 565 PELAAQVVKNWMND 578 >gi|22127339|ref|NP_670762.1| flagellar MS-ring protein [Yersinia pestis KIM 10] gi|45442785|ref|NP_994324.1| flagellar MS-ring protein [Yersinia pestis biovar Microtus str. 91001] gi|108809069|ref|YP_652985.1| flagellar MS-ring protein [Yersinia pestis Antiqua] gi|108810737|ref|YP_646504.1| flagellar MS-ring protein [Yersinia pestis Nepal516] gi|145597806|ref|YP_001161882.1| flagellar MS-ring protein [Yersinia pestis Pestoides F] gi|150260260|ref|ZP_01916988.1| lateral flagellar M-ring protein [Yersinia pestis CA88-4125] gi|162418149|ref|YP_001604857.1| flagellar MS-ring protein [Yersinia pestis Angola] gi|165924858|ref|ZP_02220690.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis str. F1991016] gi|165939096|ref|ZP_02227648.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis str. IP275] gi|166009035|ref|ZP_02229933.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str. E1979001] gi|166211925|ref|ZP_02237960.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str. B42003004] gi|167398942|ref|ZP_02304466.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419368|ref|ZP_02311121.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425084|ref|ZP_02316837.1| flagellar M-ring protein FliF [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167466352|ref|ZP_02331056.1| flagellar M-ring protein FliF [Yersinia pestis FV-1] gi|170022960|ref|YP_001719465.1| flagellar MS-ring protein [Yersinia pseudotuberculosis YPIII] gi|218927901|ref|YP_002345776.1| flagellar MS-ring protein [Yersinia pestis CO92] gi|229837397|ref|ZP_04457560.1| Flagellar M-ring protein fliF [Yersinia pestis Pestoides A] gi|229840610|ref|ZP_04460769.1| Flagellar M-ring protein fliF [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842839|ref|ZP_04462991.1| Flagellar M-ring protein fliF [Yersinia pestis biovar Orientalis str. India 195] gi|229900934|ref|ZP_04516058.1| Flagellar M-ring protein fliF [Yersinia pestis Nepal516] gi|270487684|ref|ZP_06204758.1| flagellar M-ring protein FliF [Yersinia pestis KIM D27] gi|294502778|ref|YP_003566840.1| flagellar M-ring protein [Yersinia pestis Z176003] gi|21960421|gb|AAM87013.1|AE013949_7 putative flagellar M ring protein [Yersinia pestis KIM 10] gi|45437651|gb|AAS63201.1| putative flagellar M-ring protein [Yersinia pestis biovar Microtus str. 91001] gi|108774385|gb|ABG16904.1| flagellar M-ring protein [Yersinia pestis Nepal516] gi|108780982|gb|ABG15040.1| putative flagellar M-ring protein [Yersinia pestis Antiqua] gi|115346512|emb|CAL19388.1| putative flagellar M-ring protein [Yersinia pestis CO92] gi|145209502|gb|ABP38909.1| flagellar M-ring protein [Yersinia pestis Pestoides F] gi|149289668|gb|EDM39745.1| lateral flagellar M-ring protein [Yersinia pestis CA88-4125] gi|162350964|gb|ABX84912.1| flagellar M-ring protein FliF [Yersinia pestis Angola] gi|165913052|gb|EDR31677.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis str. IP275] gi|165923058|gb|EDR40209.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis str. F1991016] gi|165992374|gb|EDR44675.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str. E1979001] gi|166206671|gb|EDR51151.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str. B42003004] gi|166963362|gb|EDR59383.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051446|gb|EDR62854.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055847|gb|EDR65628.1| flagellar M-ring protein FliF [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749494|gb|ACA67012.1| flagellar M-ring protein FliF [Yersinia pseudotuberculosis YPIII] gi|229682273|gb|EEO78365.1| Flagellar M-ring protein fliF [Yersinia pestis Nepal516] gi|229690106|gb|EEO82163.1| Flagellar M-ring protein fliF [Yersinia pestis biovar Orientalis str. India 195] gi|229696976|gb|EEO87023.1| Flagellar M-ring protein fliF [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705520|gb|EEO91530.1| Flagellar M-ring protein fliF [Yersinia pestis Pestoides A] gi|262360810|gb|ACY57531.1| flagellar M-ring protein [Yersinia pestis D106004] gi|262364755|gb|ACY61312.1| flagellar M-ring protein [Yersinia pestis D182038] gi|270336188|gb|EFA46965.1| flagellar M-ring protein FliF [Yersinia pestis KIM D27] gi|294353237|gb|ADE63578.1| flagellar M-ring protein [Yersinia pestis Z176003] gi|320016722|gb|ADW00294.1| Flagellar M-ring protein fliF [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 546 Score = 333 bits (854), Expect = 5e-89, Method: Composition-based stats. Identities = 128/560 (22%), Positives = 250/560 (44%), Gaps = 29/560 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +LD++ Q G LG IL S + + + + + +S Y L+ E + + Sbjct: 1 MLDKIKQKLSPG-QLGENTKTILMSAVALLVTAAIIFSLWRSSQGYTALFGSQENIPITQ 59 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + L I +RI+ + + V + +GKARI LAA+G+ +++ GYEL DK + G Sbjct: 60 VVEVLEGEAIAYRINPDNGQVLVAENQLGKARILLAAKGI-TATLPIGYELMDKESMLGS 118 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRAIN 181 + F+Q + R+LEGE+A+++ ++S + ARVH+ M + SF A +ASV++R Sbjct: 119 SQFIQNVRYKRSLEGELAQSMMALSAVEYARVHLGMSEASSFAISNHADNSASVVLRLRY 178 Query: 182 PSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQ 235 + AI LVA ++P + +V V+D G+LL+ AN + + Sbjct: 179 GQTLSTEQVGAIVQLVAGSIPGMKPANVRVVDQHGELLSQAYQANSEGVPSVKSGTELAH 238 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 +Q E NI L + +G +N+R +V +L+M + Y PD R++ + Sbjct: 239 YLQSTTEKNIANLLNSVIGANNYRISVSTQLDMSRIEETAEHYGPDP------RINDENI 292 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 + E S + A+ + ++ + + ++ + + Q Y + + YKLE Sbjct: 293 QQENSNDDMAMGIPGSLSNQPIPQSQAGQTPAAVSRSQAQRKYIYDRNIRHVRYPGYKLE 352 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 ++++AVV+NK + E+ +++ A GI+ +RGD++TI M F Sbjct: 353 KMTVAVVLNKS-------LPVLEQWTPEQQEELKRLIEDAAGIDVKRGDSLTINMMAFAV 405 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 L + + R + L+ +LLV + G+ L + ++ ++ + Sbjct: 406 PTLIDEPVMPWWQEPSTFRWAELLGIGLL----SLLVLWFGVRPLMKRYSRKGSENLPLA 461 Query: 476 GKSILSPPPISSAVTTGLMPNDNI-ALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 S + + T + ++ + S +L + + +K + L + Sbjct: 462 ISSASADEALDHVDTGVDGAESSPRTENAFSASSLWKSDDLPEQGSGLETKIAH--LQQL 519 Query: 535 IEINEERFAKILRKWARSEI 554 + ER A+++++W S Sbjct: 520 AQSETERTAEVIKQWINSNE 539 >gi|86149222|ref|ZP_01067454.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni CF93-6] gi|148926414|ref|ZP_01810097.1| flagellar M-ring protein [Campylobacter jejuni subsp. jejuni CG8486] gi|205356032|ref|ZP_03222800.1| flagellar M ring protein [Campylobacter jejuni subsp. jejuni CG8421] gi|218561977|ref|YP_002343756.1| flagellar MS-ring protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85840580|gb|EAQ57837.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni CF93-6] gi|112359683|emb|CAL34469.1| flagellar M-ring protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|145844577|gb|EDK21683.1| flagellar M-ring protein [Campylobacter jejuni subsp. jejuni CG8486] gi|205346156|gb|EDZ32791.1| flagellar M ring protein [Campylobacter jejuni subsp. jejuni CG8421] gi|284925590|gb|ADC27942.1| flagellar MS-ring protein [Campylobacter jejuni subsp. jejuni IA3902] gi|315928381|gb|EFV07695.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315930535|gb|EFV09578.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni 305] Length = 560 Score = 333 bits (854), Expect = 5e-89, Method: Composition-based stats. Identities = 120/566 (21%), Positives = 231/566 (40%), Gaps = 28/566 (4%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEV 57 +L Q+ Q +++ T + RI+I AS+I+V L A F + + Y L + Sbjct: 5 NMLHQIGQLYQNLTR--KQRIVIAASIIVVVGFLVFLALFRGSGSNANNGYAVLVENVSP 62 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 S I L + NI +++ + I VP V + R+ +A++GL S G+E FD Sbjct: 63 SSSAAIVAKLEQNNIPYKLESE-NKILVPQDQVYRQRMFIASEGLIKDSR-VGFEAFD-T 119 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 +FG T+ Q++ RA+EGE+ARTI+++ I +A VHI P F + PTASV++ Sbjct: 120 QAFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASVVV 179 Query: 178 RAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIV 234 K + I+++V+AAVP L +V + D +G L E E +++ + Sbjct: 180 NVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIKFK 239 Query: 235 QAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293 + +E I + LA F G+D + +V + + Q+ + +YDP+ V L+++ Sbjct: 240 SDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLNEE 299 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 + + + N+ V + ++ K + +N E++ T Sbjct: 300 RTGRKDPEIQGVPGAVSNIGPV--EGLDNKGQIDTYKKNQVTTNNELSKTITNTKKQFAT 357 Query: 354 LERLSIAVVVNKGRL----TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 + R S AV ++ +S LA + IV ++ RGD++ + Sbjct: 358 VLRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEELASVESIVKNTINFSATRGDSVVVQ 417 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 ++ F + V+ +R I + + + +L+ + Sbjct: 418 NLPFHRESIRVESKVKT----FYNRFVEPFIPPVKYFIAAILLFIFYKKVIAPFTQKML- 472 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 + + + P + N A + + + I V + Sbjct: 473 -EDVAAQEEMQQGPNAVLDDAEDALEKFNAARKKVEEQLGFGDNFNEDSIQYEVLLE--- 528 Query: 530 RLLHMIEINEERFAKILRKWARSEIE 555 +L ++ E A +L+ +++ E Sbjct: 529 KLRGLVSDKGEEIAALLQNLIQNDSE 554 >gi|167040330|ref|YP_001663315.1| flagellar M-ring protein FliF [Thermoanaerobacter sp. X514] gi|300914414|ref|ZP_07131730.1| flagellar M-ring protein FliF [Thermoanaerobacter sp. X561] gi|307724350|ref|YP_003904101.1| flagellar M-ring protein FliF [Thermoanaerobacter sp. X513] gi|166854570|gb|ABY92979.1| flagellar M-ring protein FliF [Thermoanaerobacter sp. X514] gi|300889349|gb|EFK84495.1| flagellar M-ring protein FliF [Thermoanaerobacter sp. X561] gi|307581411|gb|ADN54810.1| flagellar M-ring protein FliF [Thermoanaerobacter sp. X513] Length = 503 Score = 333 bits (853), Expect = 6e-89, Method: Composition-based stats. Identities = 123/567 (21%), Positives = 224/567 (39%), Gaps = 85/567 (14%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 +QL F+ + ++ I+A ++ + I L + + VN P+Y LY L + D Sbjct: 7 NFREQLTNFWNKFDKKQKIQLGIIAILLFIGISLLV---YIVNRPNYVVLYSDLSIKDAG 63 Query: 62 RISVALSEA-NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK-VNS 119 + L I ++IS++G++I VP+ + R+ LA +G+P G+ D NS Sbjct: 64 AVVEKLKTEFKIPYKISNDGTTILVPAQYKDEVRMKLATEGIPQG----GFSFQDAMNNS 119 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARPTASVMI 177 T + + L+ EI ++++I G+ A V+IV+PD +F + TA+VM+ Sbjct: 120 LATTDQERRQKYLYFLQNEIQNSLKTIDGVQDAIVNIVVPDQNAFVLSNTTNQATAAVML 179 Query: 178 RAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIV 234 + I V+ +V L +VTV+D+ GK+LTA ++ ++ Sbjct: 180 TLKPGVTLSSSQVKGIIDFVSKSVEGLKPENVTVIDNNGKILTAESDTTAENANTQFTLQ 239 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIR 289 + +Q +++ ++ L G N LN D + I Y P + + RSI+ Sbjct: 240 KKVQEDLQNSLQTLLEQVFGPGNVVVRANVTLNFDKKTQDTIEYLPVQGNDNKGIVRSIQ 299 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 K+ ++ +Q S+ N P V+ + + E NYEIN + Sbjct: 300 ELKE--KATGTQGGSSPGTASNNPPVAST---TGNGTSDYSRTETTINYEINQIKTSLVQ 354 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD---TI 406 K+E +SIAVVVN Q +S +I +V+ A G GD + Sbjct: 355 AQGKIENISIAVVVN-------------QNLNNSMKQQIADLVTKAAG-----GDSLVQV 396 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 ++ M F ++ L + Q + + ++ ALV G L+ +RR Sbjct: 397 SVQGMQFNQD-LLKTMQQQAKASKGVPVYVWAILAALVLGGGLFLI------MMRRKKKE 449 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 E + + P + I+ + Sbjct: 450 TSLTTAEQEVLATVEPTYV---------------------------------IDFSDKDE 476 Query: 527 SDLRLLHMIEINEERFAKILRKWARSE 553 ++ +I+ + +I+R W E Sbjct: 477 KKKQIEKLIKEKPDIVVQIIRTWLNEE 503 >gi|218708823|ref|YP_002416444.1| flagellar MS-ring protein [Vibrio splendidus LGP32] gi|218321842|emb|CAV17815.1| Flagellar M-ring protein [Vibrio splendidus LGP32] Length = 580 Score = 333 bits (853), Expect = 6e-89, Method: Composition-based stats. Identities = 105/554 (18%), Positives = 228/554 (41%), Gaps = 36/554 (6%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 L R +L+L+ I V +++ + F+V P L E ++ + L I Sbjct: 48 GDLDLLRQVVLVLSISICVALIVMLF--FWVKEPEMRPLGA-YETEELIPVLDYLDTQKI 104 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 ++ + G++ISVP+S ++++ GL + N+G ++ + FG++ +++ Sbjct: 105 EYSLE--GNTISVPASEYNSLKLNMVRAGL-NQERNTGDDILMQDMGFGVSQRLEKERLK 161 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEA 190 + E ++A+ I+ + + A+V + +P F + +ASV + + K ++ Sbjct: 162 LSRERQLAKAIEQMKQVRKAQVLLALPKQSVFVRHNQEASASVFLTLKTGTNLKQQEVDS 221 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNINKA 248 + +VA+AVP + +TV D G+LL++ + K + + + + I+ Sbjct: 222 VVDMVASAVPGMKTSRITVTDQHGRLLSSGSQDPMSAARRKEHELERNQEQALREKIDSI 281 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------T 299 L LG N+ + V +L+ + +DP++ RS +D + Sbjct: 282 LIPILGFGNYTAQVDIQLDFSAVEQTRKRFDPNTPATRSEYTLEDYNNGNVVAGIPGALS 341 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 +QP + ++ Q++ + D + S+ KE N+E++T + + R ++ Sbjct: 342 NQPPADASIPQDVAQMKDGTMMGQGSV----HKEATRNFELDTTISHERKQSGTVNRQTV 397 Query: 360 AVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 +V + ++ L G S + I +++ G + RGD + + SM F Sbjct: 398 SVAIKDRQSLNPDTGEVVHTPIPASEINAIRQVLIGTVGFDENRGDLLNVLSMQFAPQVT 457 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 V + + +ALV +V L++ A+++L N ++ G Sbjct: 458 DIVADVPIWEHQHFNDWVRWFASALVIIVVVLVLV---RPAMKKLLNPAADDDDQMYGP- 513 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 PI + T L+ D ++ F S +L N + + + ++ Sbjct: 514 --DGMPIGADGETSLIGGD---IEGGELFEFGSSIDLP---NLHKDEDVLKAVRALVANE 565 Query: 539 EERFAKILRKWARS 552 E A++++ W Sbjct: 566 PELAAQVVKNWVAD 579 >gi|84388111|ref|ZP_00991007.1| flagellar M-ring protein [Vibrio splendidus 12B01] gi|84377178|gb|EAP94048.1| flagellar M-ring protein [Vibrio splendidus 12B01] Length = 580 Score = 333 bits (853), Expect = 7e-89, Method: Composition-based stats. Identities = 106/552 (19%), Positives = 227/552 (41%), Gaps = 36/552 (6%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 L R +L+L+ I V +++ + F+V P L E ++ + L I Sbjct: 48 GDLDLLRQVVLVLSISICVALIVMLF--FWVKEPEMRPLGA-YETEELIPVLDYLDLQKI 104 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 ++ + G++ISVP+S ++++ GL + N+G ++ + FG++ +++ Sbjct: 105 EYTLE--GNTISVPASEYNSLKLNMVRAGL-NQERNAGDDILMQDMGFGVSQRVEQERLK 161 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEA 190 + E ++A+ I+ + + A+V + +P F + +ASV + + K ++ Sbjct: 162 LSRERQLAKAIEQMKQVRKAQVLLALPKQSVFVRHNQEASASVFLTLKTGTNLKQQEVDS 221 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNINKA 248 + +VA+AVP + +TV D G+LL + + K + + + + I+ Sbjct: 222 VVDMVASAVPGMKTSRITVTDQHGRLLNSGSQDPMSAARRKEHELERNQEQALREKIDSI 281 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET--------- 299 L LG N+ + V +L+ + +DP++ RS +D T Sbjct: 282 LIPILGFGNYTAQVDIQLDFSAVEQTRKRFDPNTPATRSEYTLEDYNNGNTVAGIPGALS 341 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 +QP + ++ Q++ + D + S+ KE N+E++T + + R ++ Sbjct: 342 NQPPADASIPQDVAQMKDGSMTGQGSV----HKEATRNFELDTTISHERKQSGTVNRQTV 397 Query: 360 AVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 +V + ++ L G S + I +++ G + RGD + + SM F Sbjct: 398 SVAIKDRQSLNPDTGEVVHTPIPASEINAIRQVLIGTVGFDENRGDLLNVLSMQFAPQVT 457 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 V + + +ALV +V L++ A+++L N ++ G Sbjct: 458 DIVADVPIWEHPNFNDWVRWFASALVIIVVVLVLV---RPAMKKLLNPAADDDDQMYGP- 513 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 PI + T L+ D ++ F S +L N + + + ++ Sbjct: 514 --DGMPIGADGETSLIGGD---IEGGELFEFGSSIDLP---NLHKDEDVLKAVRALVANE 565 Query: 539 EERFAKILRKWA 550 E A++++ W Sbjct: 566 PELAAQVVKNWM 577 >gi|126738564|ref|ZP_01754269.1| flagellar M-ring protein FliF [Roseobacter sp. SK209-2-6] gi|126720363|gb|EBA17069.1| flagellar M-ring protein FliF [Roseobacter sp. SK209-2-6] Length = 520 Score = 332 bits (852), Expect = 9e-89, Method: Composition-based stats. Identities = 149/533 (27%), Positives = 225/533 (42%), Gaps = 37/533 (6%) Query: 48 YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 LY LE + +L + + + G SI VPS + R+ LA++GLP++ Sbjct: 1 MRLLYAGLESGSAGDVVRSLEQRGTPYEVR--GGSIYVPSDQRDELRLTLASEGLPANGG 58 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 GYEL D ++ FG TS M + RA EGE+ARTI I ARVHI F++ Sbjct: 59 K-GYELLDSLSGFGTTSQMFDAAYWRAKEGELARTIVGSPHISQARVHIANTGSNPFQRT 117 Query: 168 GARPTASVMIRAIN-PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI 226 PTASV + + P A AIR L+A+AV L + +V V+D+ G L+ + E Sbjct: 118 VD-PTASVSVVPLGSPITPAQANAIRFLIASAVTGLAVDNVAVIDANGALIGSTEAAAAA 176 Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVER 286 S Q+ I + + + A +G N V + DT+ IRE DP+S+V Sbjct: 177 GAGSDDRSQS----IRDRVMRLVEARVGHGNAVVEVSVDTVTDTESIREKRVDPESRVAI 232 Query: 287 SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346 S + + A S S VTV N+P S NT E+ NYEI+ Sbjct: 233 STDVEERADSS--SNQTGEVTVASNLPD--GDAASGEGSKNNTSATRERVNYEISETEKE 288 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 ++RL++AV++N T G + + + + LA + +++SAA G + RGD I Sbjct: 289 IIRGPGAIKRLTVAVLINGTTSTTATGETQFEPRPEEELAALRELISAAVGFDESRGDVI 348 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL------ 460 T+ SM+ L + SFMD L +I + +L++ + + Sbjct: 349 TLKSME-LPSIEPQGTEATASFMDNLYFDTMGIIQVAALALVSLILGLFVVRPILASSGS 407 Query: 461 -----RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND---NIALDSSNQDIFSHS 512 + D GG L + + +M D NIALD ++ Sbjct: 408 GDSAALPALSSPDPMGDLPGGLPELPAMNTAPNMGDFMMNPDLGSNIALDGEIENEAGQF 467 Query: 513 RNLQSRINSYVSKQ--------SDLRLLHMIEINEERFAKILRKWARSEIEDR 557 +L RL MI +E +ILR W E E+R Sbjct: 468 DSLGGMGGLPALGGGMGGGGDNPVDRLREMIGERQEETVQILRGWL-EENEER 519 >gi|307315211|ref|ZP_07594790.1| flagellar M-ring protein FliF [Escherichia coli W] gi|331666532|ref|ZP_08367406.1| flagellar M-ring protein FliF [Escherichia coli TA271] gi|306905392|gb|EFN35929.1| flagellar M-ring protein FliF [Escherichia coli W] gi|315059474|gb|ADT73801.1| Lateral flagellar M-ring protein [Escherichia coli W] gi|323181532|gb|EFZ66952.1| flagellar M-ring protein FliF [Escherichia coli 1357] gi|323379968|gb|ADX52236.1| flagellar M-ring protein FliF [Escherichia coli KO11] gi|331065756|gb|EGI37640.1| flagellar M-ring protein FliF [Escherichia coli TA271] Length = 548 Score = 332 bits (851), Expect = 9e-89, Method: Composition-based stats. Identities = 131/564 (23%), Positives = 244/564 (43%), Gaps = 41/564 (7%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L Q F+ + + L+ + V + + + + Y +LY + E V++I Sbjct: 8 LTQAFPAFRLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQI 67 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L + +RI I VP + K R+ LAA+G+ + SGYEL DK G + Sbjct: 68 VTVLDGEKLTYRIDPQSGQILVPEEALSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSS 126 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINP 182 F+Q + R+LEGE+A++I S+ + +ARVH+ + + SF + +ASV++R Sbjct: 127 QFVQNVRYKRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYG 186 Query: 183 SVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQA 236 + AI HLV+ ++P L V+V+D G LLT A E K I++ Sbjct: 187 AKLNMDQVNAIVHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKD 246 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 IQ + ++ L + +G N+R +V+ +L++ T + Y K+ R + Sbjct: 247 IQDKTHASVANVLDSLVGSGNYRVSVMPDLDLSTIDETQEHYGDAPKINR----EESVLD 302 Query: 297 SETSQPE-SAVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHD 350 S+T+Q N P V+ ++ + E + +Y + H Sbjct: 303 SDTNQVAMGVPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHP 362 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 + ++RL++AVV+N+ A + A++ +++ A GI+++RGD +T++ Sbjct: 363 GFAVKRLNVAVVLNQNA-------PALKNWKPEQTAQLTALLNNAAGIDAQRGDNLTLSL 415 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 ++F+ + + + D + A V L+ LL+ F+ ++RL + Sbjct: 416 LNFVPQAVPVEPIIPLWKDDSV---LAWVRLIGCGLLALLLLFFVVRPVMKRLTAVR--- 469 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 P S AV+ + + + +L S+ + K L+ Sbjct: 470 --------APIITPESEAVSEPWIAMPEEERKNVDLPSLPGDDSLPSQSSGLEVKLEFLQ 521 Query: 531 LLHMIEINEERFAKILRKWARSEI 554 L M + + R A++LR+W S Sbjct: 522 KLAMSDTD--RVAEVLRQWITSNE 543 >gi|311085815|gb|ADP65897.1| flagellar MS-ring protein [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] Length = 489 Score = 332 bits (851), Expect = 9e-89, Method: Composition-based stats. Identities = 92/380 (24%), Positives = 173/380 (45%), Gaps = 22/380 (5%) Query: 52 YVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGY 111 Y L D I L+E I ++ +D+ I VP V + R+ LA LP S G+ Sbjct: 2 YNHLSNEDSGSIINELNEMKIPYQFTDSDGPILVPKDKVYEIRLRLAENNLPRGGS-IGF 60 Query: 112 ELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARP 171 EL DK FG++ + ++I RALEGE+ARTI+ I+ + AR+HI F + + Sbjct: 61 ELLDKE-KFGISQYNEQINYHRALEGELARTIKKINSVKNARIHIAFSKSSLFLQDKKKS 119 Query: 172 TASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILG 228 +AS+++ AI HL+++++ +L + ++T++D +GKLL +E + Sbjct: 120 SASIILELQPGRNLNTGQINAIMHLISSSISDLPVENITIVDQSGKLLNQTSVEYDQVND 179 Query: 229 KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KV 284 + I+ I L +G+ N + V A+++ + Q+ + Y P+S + Sbjct: 180 SQFKYTEEIETRYRNRIKNILEPLVGIGNIYAQVTAQIDFNAQEKTQEKYSPNSDHKNQS 239 Query: 285 ERSIRLSKDAQRSETSQPESAVTVEQNMPH--VSDRKVPLPRSLENTD-------KKEEQ 335 RS ++ + +++ E N + + + ++L+N ++ Sbjct: 240 IRSHQIIIHNEIEKSNIQEETPIPLSNSNNHVYFNNNIKNSKNLKNNYIPVDSKINRDNT 299 Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395 NYE+N T + +++RLS AV+VN + + I ++ A Sbjct: 300 VNYELNHSVSHTKMNIGEIKRLSAAVIVNFSKDKNGK----FVPLSTQKIKNIEHLIREA 355 Query: 396 TGINSRRGDTITITSMDFLE 415 G + RGD++ + + F + Sbjct: 356 IGYSKARGDSVHLVNASFAK 375 >gi|260853453|ref|YP_003227344.1| putative lateral flagellar basal-body M-ring and collar protein [Escherichia coli O26:H11 str. 11368] gi|257752102|dbj|BAI23604.1| predicted lateral flagellar basal-body M-ring and collar protein [Escherichia coli O26:H11 str. 11368] gi|323158008|gb|EFZ44109.1| flagellar M-ring protein FliF [Escherichia coli EPECa14] Length = 548 Score = 332 bits (851), Expect = 9e-89, Method: Composition-based stats. Identities = 129/557 (23%), Positives = 242/557 (43%), Gaps = 41/557 (7%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 F+ + + L+ + V + + + + Y +LY + E V++I L Sbjct: 15 FRLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQIVTVLDGE 74 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 + +RI I VP + K R+ LAA+G+ + SGYEL DK G + F+Q + Sbjct: 75 KLTYRIDPQSGQILVPEEALSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSSQFVQNVR 133 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINPSVY--KS 187 R+LEGE+A++I S+ + +ARVH+ + + SF + +ASV++R + Sbjct: 134 YKRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYGAKLNMDQ 193 Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEM 243 AI HLV+ ++P L V+V+D G LLT A E K I++ IQ + Sbjct: 194 VNAIVHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTHA 253 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 ++ L + +G N+R +V+ +L++ T + Y K+ R + S+T+Q Sbjct: 254 SVANVLDSLVGSGNYRVSVMPDLDLSTIDETQEHYGDAPKINR----EESVLDSDTNQVA 309 Query: 304 -SAVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHDNYKLERL 357 N P V+ ++ + E + +Y + H + ++RL Sbjct: 310 MGVPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHPGFAVKRL 369 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 ++AVV+N+ A + A++ +++ A GI+++RGD +T++ ++F+ Sbjct: 370 NVAVVLNQNA-------PALKNWKPEQTAQLTALLNNAAGIDAQRGDNLTLSLLNFVPQA 422 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 + + + D + A V L+ LL+ F+ ++RL + Sbjct: 423 VPVEPIIPLWKDDSV---LAWVRLIGCGLLALLLLFFVVRPVMKRLTAVR---------- 469 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 P S AV+ + + + +L S+ + K L+ L M + Sbjct: 470 -APIITPESEAVSEPWIAMPEEERKNVDLPSLPGDDSLPSQSSGLEVKLEFLQKLAMSDT 528 Query: 538 NEERFAKILRKWARSEI 554 + R A++LR+W S Sbjct: 529 D--RVAEVLRQWITSNE 543 >gi|167576644|ref|ZP_02369518.1| flagellar MS-ring protein [Burkholderia thailandensis TXDOH] Length = 531 Score = 332 bits (851), Expect = 1e-88, Method: Composition-based stats. Identities = 115/512 (22%), Positives = 207/512 (40%), Gaps = 20/512 (3%) Query: 45 SPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPS 104 +Y L+ E ++ + AL I +RI + + V S V +AR+ LAA+G+ + Sbjct: 32 QANYKPLFGAREPVQLDDVVSALDAQRIPYRIHPDTGQVLVARSDVARARMMLAARGV-T 90 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + G E D+ + G + F+Q++ R LE E+A++I ++ + ARVH+ + SF Sbjct: 91 AKAAPGLEQIDQDDPLGTSQFVQDVRFRRGLESELAQSIATLDPVERARVHLSIAKSSSF 150 Query: 165 RKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE 221 + +A+ ++ + P + A+ +LVA +VPNL G V+V+D G L+A Sbjct: 151 VMMDGDKSAASVVLTLKPGARLAKEQIAAVINLVAGSVPNLAPGKVSVVDQHGAFLSARV 210 Query: 222 MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD 281 L + I + ++ N+ LA LG NFR +V A +N D + + Sbjct: 211 DLDGDLTGNDEIAARFRDDVTRNVEDLLAPSLGPGNFRVSVTAVVNNDRVEETREQFGEA 270 Query: 282 SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEIN 341 KV ++ + N P D P + + + + + Sbjct: 271 PKVMSEATRNEQNRD---RVALGVPGSLSNRP--VDVPASGPDADSGSRRNATTRQFAYD 325 Query: 342 TKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR 401 +LE+LS+AVV+N + + + L I+ I+ + GI+ + Sbjct: 326 RNITQIKRGRGQLEKLSVAVVLN-----NAVSPTKGKPWQPDQLRRIDDILRSGLGIDKQ 380 Query: 402 RGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461 RGD + ++S+DF D L + + AL L G LL+ L L+ Sbjct: 381 RGDQLIVSSLDFAAPA---PAEPWWKERDTLEQGGWYLTYALAALFGYLLLARPMLRMLQ 437 Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521 + S L P A P+D + + + Sbjct: 438 QWMQHRYGAPPAAAPASRLQAPEGGDAQAALPAPDDARPPLGAMLPLLDDVELPPADSGV 497 Query: 522 YVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 V L + E ER A+++++W R++ Sbjct: 498 EVLIGH---LRSLSEKEPERVAEVVKQWIRND 526 >gi|187935660|ref|YP_001885041.1| flagellar MS-ring protein [Clostridium botulinum B str. Eklund 17B] gi|187723813|gb|ACD25034.1| flagellar M-ring protein FliF [Clostridium botulinum B str. Eklund 17B] Length = 520 Score = 332 bits (851), Expect = 1e-88, Method: Composition-based stats. Identities = 119/563 (21%), Positives = 231/563 (41%), Gaps = 56/563 (9%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 +L+++ ++ + + + + + I+ + + +S Y L+ L+ D Sbjct: 3 KLLEKVKGLWEKFKTQSKKIKIAIFVSCVAVIIAIASTAIYTSSNKYQVLFSNLDPKDAQ 62 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L+E + +I G +I VP+ V + R+ LA + S +SGYEL D +SFG Sbjct: 63 TILAKLNEQKVTTKIQ--GDTILVPNDKVDQLRLELAPE---LKSGSSGYELMDSGSSFG 117 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 +T ++ ++R EGE+ +TI+S S I +ARVHI F K A+V + Sbjct: 118 MTDEEFKVKKLRMQEGELEKTIKSFSQIESARVHITPSTDSVFVKESTPGKAAVYLELKT 177 Query: 182 PS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-------RNILGKSLS 232 S ++I LV+ + N+ ++ V+D LLTAN + L K S Sbjct: 178 GSEITKDQVKSIVALVSGSTENVPKENIEVIDDKMNLLTANLNDDENEMMSSESLDKQYS 237 Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292 + + + +++ I L +G D ++ V +L+ D++Q + V DP+ KV S + K Sbjct: 238 LEKNYESKLQKEIVSLLEPVIGKDKVKATVNVDLDFDSKQQTQTVLDPN-KVVVSQQTIK 296 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 + ++ + S V+ N+ + +D + N+ ++E+++NYEI Sbjct: 297 EVNNTDANGNISESPVDNNISNTTDD---TNNTKSNSSREEQKNNYEIGKTETKVISAPG 353 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 +++R++ +VVV+ + I VS A G NS RGD I++ M+ Sbjct: 354 EVKRMTASVVVDGN-------------LDAATQQAIENAVSNAIGFNSVRGDQISVLGMN 400 Query: 413 FLENQLFNSGTVQVSF-MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 F + ++ +F + + + + L+V + L RR + D+ Sbjct: 401 FDPSLKEDTQNQTDAFNAEAKQKEMQKYMIMGAIALLALIVIIVILVKKRRKNAKDE--- 457 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 D + D +IF ++ + + Sbjct: 458 -----------------YDDDTQLLDVVVGDEKEPEIFEPIEFETKNEKIHMENE----I 496 Query: 532 LHMIEINEERFAKILRKWARSEI 554 E+ +I++ W + Sbjct: 497 KKYATDKPEQVVEIIKSWLSEDE 519 >gi|323191522|gb|EFZ76783.1| flagellar M-ring protein FliF [Escherichia coli RN587/1] Length = 548 Score = 332 bits (851), Expect = 1e-88, Method: Composition-based stats. Identities = 127/564 (22%), Positives = 242/564 (42%), Gaps = 41/564 (7%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L Q F+ + + L++ + V + + + + Y +LY + E V++I Sbjct: 8 LTQAFPAFRLRLADNKRWALMVGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQI 67 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L + +RI I VP + K R+ LAA+G+ + SGYEL DK G + Sbjct: 68 VTVLDGEKLSYRIDPQSGLILVPEDALSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSS 126 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINP 182 F+Q + R+LEGE+A++I S+ + +ARVH+ + + SF + +ASV++R Sbjct: 127 QFVQNVRYKRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYG 186 Query: 183 SVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQA 236 + AI HLV+ ++P L V+V+D G LLT A E K I++ Sbjct: 187 AKLNMDQVTAIVHLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKD 246 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 IQ + ++ L + +G N+R +V+ +L++ T + Y K+ R + Sbjct: 247 IQDKTRASVANVLDSLVGTGNYRVSVMPDLDLSTIDETQEHYGDAPKINR----EESVLD 302 Query: 297 SETSQPE-SAVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHD 350 S+T+Q N P ++ ++ + E + +Y + H Sbjct: 303 SDTNQVAMGVPGSLSNRPPIAANQMSNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHP 362 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 + ++RL++AVV+N+ A + ++ +++ A GI+++RGD ++++ Sbjct: 363 GFAVKRLNVAVVLNQNA-------PALKNWKPEQTTQLTALLNNAAGIDAQRGDNLSLSL 415 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 ++F+ + + + D +V+ + + LL L +R L A Sbjct: 416 LNFVPQAVPVEPVIPLWKDD-------SVLAWVRLIGCGLLALLLLFFVVRPLMKRLTAV 468 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 + V P AV+ + + + +L S+ + K L+ Sbjct: 469 RAPV-------ITPEPEAVSEPWIAMPEEERKNVDLPSLPGDDSLPSQSSGLEVKLEFLQ 521 Query: 531 LLHMIEINEERFAKILRKWARSEI 554 L M + + R A++LR+W S Sbjct: 522 KLAMSDTD--RVAEVLRQWITSNE 543 >gi|86146136|ref|ZP_01064462.1| flagellar M-ring protein [Vibrio sp. MED222] gi|85836083|gb|EAQ54215.1| flagellar M-ring protein [Vibrio sp. MED222] Length = 580 Score = 332 bits (851), Expect = 1e-88, Method: Composition-based stats. Identities = 105/554 (18%), Positives = 227/554 (40%), Gaps = 36/554 (6%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 L R +L+L+ I V +++ + F+V P L E ++ + L I Sbjct: 48 GDLDLLRQVVLVLSISICVALIVMLF--FWVKEPEMRPLGA-YETEELIPVLDYLDTQKI 104 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 ++ + G++ISVP+S ++++ GL + N+G ++ + FG++ +++ Sbjct: 105 EYSLE--GNTISVPASEYNSLKLNMVRAGL-NQERNTGDDILMQDMGFGVSQRLEKERLK 161 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEA 190 + E ++A+ I+ + + A+V + +P F + +ASV + + K ++ Sbjct: 162 LSRERQLAKAIEQMKQVRKAQVLLALPKQSVFVRHNQEASASVFLTLKTGTNLKQQEVDS 221 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNINKA 248 + +VA+AVP + +TV D G+LL++ + K + + + + I+ Sbjct: 222 VVDMVASAVPGMKTSRITVTDQHGRLLSSGSQDPMSAARRKEHELERNQEQALREKIDSI 281 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------T 299 L LG N+ + V +L+ + +DP++ RS +D + Sbjct: 282 LIPILGFGNYTAQVDIQLDFSAVEQTRKRFDPNTPATRSEYTLEDYNNGNVVAGIPGALS 341 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 +QP + ++ Q++ + D + S+ KE N+E++T + + R ++ Sbjct: 342 NQPPADASIPQDVAQMKDGTMMGQGSV----HKEATRNFELDTTISHERKQSGTVNRQTV 397 Query: 360 AVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 +V + ++ L G S + I +++ G + RGD + + SM F Sbjct: 398 SVAIKDRQSLNPDTGEVVHTPIPASEINAIRQVLIGTVGFDENRGDLLNVLSMQFAPQVT 457 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 V + + +ALV +V L++ A+++L N ++ G Sbjct: 458 DIVADVPIWEHQHFNDWVRWFASALVIIVVVLVLV---RPAMKKLLNPAADDDDQMYGP- 513 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 PI T L+ D ++ F S +L N + + + ++ Sbjct: 514 --DGMPIGVDGETSLIGGD---IEGGELFEFGSSIDLP---NLHKDEDVLKAVRALVANE 565 Query: 539 EERFAKILRKWARS 552 E A++++ W Sbjct: 566 PELAAQVVKNWVAD 579 >gi|323171047|gb|EFZ56696.1| flagellar M-ring protein FliF [Escherichia coli LT-68] Length = 548 Score = 332 bits (851), Expect = 1e-88, Method: Composition-based stats. Identities = 129/557 (23%), Positives = 245/557 (43%), Gaps = 41/557 (7%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 F+ + + L+ + V + + + + Y +LY + E V++I L Sbjct: 15 FRLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQIVTVLDGE 74 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 + +RI I VP + K R+ LAA+G+ + SGY+L DK G + F+Q + Sbjct: 75 KLSYRIDPQSGQILVPEEALSKTRMTLAAKGV-QAILPSGYDLMDKDEVLGSSQFVQNVR 133 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINPSVY--KS 187 R+LEGE+A++I S+ + +ARVH+ + + SF + +ASV++R + Sbjct: 134 YKRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYGAKLNMDQ 193 Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEM 243 AI HLV+ ++P L V+V+D G LLT A E K I++ IQ + Sbjct: 194 VNAIVHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRA 253 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 ++ L + +G N+R +V+ +L++ T + Y K+ R + S+T+Q Sbjct: 254 SVANVLDSLVGSGNYRVSVMPDLDLSTIDETQEHYGDAPKINR----EESVLDSDTNQVA 309 Query: 304 -SAVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHDNYKLERL 357 N P V+ ++ + E + +Y + H + ++RL Sbjct: 310 MGVPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHPGFAVKRL 369 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 ++AVV+N+ A + A++ +++ A GI+++RGD +T++ ++F+ Sbjct: 370 NVAVVLNQNA-------PALKNWKPEQTAQLTALLNNAAGIDAQRGDNLTLSLLNFVPQV 422 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 + + D + A V L+ LL+ F+ ++RL + Sbjct: 423 APVEPVIPLWKDDSV---LAWVRLIGCGLLALLLLFFVVRPVMKRLTAVRAP-------- 471 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 I++P P + + MP + + + +L S+ + K L+ L M + Sbjct: 472 -IITPEPEAVSEPWIAMPEEE--RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQKLAMSDT 528 Query: 538 NEERFAKILRKWARSEI 554 + R A++LR+W S Sbjct: 529 D--RVAEVLRQWITSNE 543 >gi|218703511|ref|YP_002411030.1| flagellar MS-ring protein [Escherichia coli UMN026] gi|293403341|ref|ZP_06647432.1| predicted protein [Escherichia coli FVEC1412] gi|298378953|ref|ZP_06988834.1| flagellar M-ring protein FliF [Escherichia coli FVEC1302] gi|300898054|ref|ZP_07116423.1| flagellar M-ring protein FliF [Escherichia coli MS 198-1] gi|218430608|emb|CAR11474.1| Lateral flagellar M-ring protein (FliF-like) [Escherichia coli UMN026] gi|291429194|gb|EFF02214.1| predicted protein [Escherichia coli FVEC1412] gi|298280066|gb|EFI21570.1| flagellar M-ring protein FliF [Escherichia coli FVEC1302] gi|300358232|gb|EFJ74102.1| flagellar M-ring protein FliF [Escherichia coli MS 198-1] Length = 548 Score = 331 bits (850), Expect = 1e-88, Method: Composition-based stats. Identities = 131/564 (23%), Positives = 247/564 (43%), Gaps = 41/564 (7%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L Q F+ + + L+ + V + + + + Y +LY + E V++I Sbjct: 8 LTQAFPAFRLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQI 67 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L + +RI I VP + K R+ LAA+G+ + SGYEL DK G + Sbjct: 68 VTVLDGEKLSYRIDPQSGQILVPEDALSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSS 126 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINP 182 F+Q + R+LEGE+A++I S+ + +ARVH+ + + SF + +ASV++R Sbjct: 127 QFVQNVRYKRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYG 186 Query: 183 SVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQA 236 + AI HLV+ ++P L V+V+D G LLT A E K I++ Sbjct: 187 AKLNMDQVNAIMHLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKD 246 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 IQ + ++ L + +G N+R +V+ +L++ T + Y K+ R + Sbjct: 247 IQDKTRASVANVLDSLVGTGNYRVSVMPDLDLSTIDETQEHYGDAPKINR----EESVLD 302 Query: 297 SETSQPE-SAVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHD 350 S+T+Q N P V+ ++ + E + +Y + H Sbjct: 303 SDTNQVAMGVPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHP 362 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 + ++RL++AVV+N+ A + A++ +++ A GI+ +RGD +T++ Sbjct: 363 GFAVKRLNVAVVLNQNA-------PALKNWKPEQTAQLTALLNNAAGIDVQRGDNLTLSL 415 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 ++F+ + + + D + A V L+ LL+ F+ ++RL + Sbjct: 416 LNFVPQAVPVEPIIPLWKDDSV---LAWVRLIGCGLLALLLLFFVVRPVMKRLTAVRAP- 471 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 +++P P + + MP + + + +L S+ + K L+ Sbjct: 472 --------VITPEPEAVSEPWIAMPEEE--RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQ 521 Query: 531 LLHMIEINEERFAKILRKWARSEI 554 L M + + R A++LR+W S Sbjct: 522 KLAMSDTD--RVAEVLRQWITSNE 543 >gi|269965705|ref|ZP_06179818.1| flagellar M-ring protein [Vibrio alginolyticus 40B] gi|269829773|gb|EEZ84009.1| flagellar M-ring protein [Vibrio alginolyticus 40B] Length = 580 Score = 331 bits (850), Expect = 1e-88, Method: Composition-based stats. Identities = 107/554 (19%), Positives = 239/554 (43%), Gaps = 36/554 (6%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 L R +L+L+ I V +++ + F+V P L E ++ + L + I Sbjct: 47 GDLDLLRQVVLVLSISICVALIVMLF--FWVKEPEMRPLGA-YETEELIPVLDYLDQQKI 103 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 ++++ +G+++SV SS ++ + G+ + ++ +G ++ + FG++ +++ Sbjct: 104 NYKL--DGNTVSVESSEYNSIKLGMVRSGV-NQATEAGDDILLQDMGFGVSQRLEQERLK 160 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEA 190 + E ++A+ I+ + + ARV + +P F + +ASV + + K ++ Sbjct: 161 LSRERQLAQAIEEMKQVRKARVLLALPKHSVFVRHNQEASASVFLTLSTGTNLKQQEVDS 220 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKA 248 I +VA+AVP + +TV D G+LL++ + K + ++ + + I+ Sbjct: 221 IVDMVASAVPGMKTSRITVTDQHGRLLSSGSQDPASAARRKEQELERSQEQALREKIDSV 280 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------T 299 L LG N+ + V +++ + +DP++ RS +D + Sbjct: 281 LLPILGYGNYTAQVDIQMDFSAVEQTRKRFDPNTPATRSEYALEDYNNGNMVAGIPGALS 340 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 +QP + ++ Q++ + D V S+ +KE N+E++T + R ++ Sbjct: 341 NQPPADASIPQDVAQMKDGSVMGQGSV----RKESTRNFELDTTISHERKQTGTVARQTV 396 Query: 360 AVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 +V + ++ ++ G +S + I +++ G + RGD + + S+ F E + Sbjct: 397 SVAIKDRRQVNPDTGEVTYTPMSESEINAIRQVLIGTVGFDQGRGDLLNVLSVKFAEPED 456 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 + S +ALV +V L++ A+++L N + E+ G Sbjct: 457 EQLEEPPIWEHPNFSDWVRWFASALVIIVVVLVLV---RPAMKKLLNPTSDDEDEMYGPD 513 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 L PI + T L+ +D ++SS F S +L N + + + ++ Sbjct: 514 GL---PIGADGETSLIGSD---IESSELFEFGSSIDLP---NLHKDEDVLKAVRALVANE 564 Query: 539 EERFAKILRKWARS 552 E A++++ W Sbjct: 565 PELAAQVVKNWMND 578 >gi|153947902|ref|YP_001399623.1| flagellar MS-ring protein [Yersinia pseudotuberculosis IP 31758] gi|152959397|gb|ABS46858.1| flagellar M-ring protein FliF [Yersinia pseudotuberculosis IP 31758] Length = 546 Score = 331 bits (850), Expect = 1e-88, Method: Composition-based stats. Identities = 129/560 (23%), Positives = 249/560 (44%), Gaps = 29/560 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +LD++ Q G LG IL S + + + + +S Y L+ E V + Sbjct: 1 MLDKIKQKLSPG-QLGENTKTILMSAAALLVTAAIIFSLWRSSQGYTALFGSQENIPVTQ 59 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + L I +RI+ + + V + +GKARI LAA+G+ +++ GYEL DK + G Sbjct: 60 VVEVLEGEAIAYRINPDNGQVLVAENQLGKARILLAAKGI-TATLPIGYELMDKESMLGS 118 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRAIN 181 + F+Q + R+LEGE+A+++ ++S + ARVH+ M + SF + +ASV++R Sbjct: 119 SQFIQNVRYKRSLEGELAQSMMALSAVEYARVHLGMSEASSFAISNRSDNSASVVLRLRY 178 Query: 182 PSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQ 235 + AI LVA ++P + +V V+D G+LL+ AN + + Sbjct: 179 GQTLSTEQVGAIVQLVAGSIPGMKPANVRVVDQHGELLSQAYQANSEGVPSVKSGTELAH 238 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 +Q E NI L + +G +N+R +V +L+M + Y PD R++ + Sbjct: 239 YLQSTTEKNIANLLNSVIGANNYRISVSTQLDMSRIEETAERYGPDP------RINDENI 292 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 + E S + A+ + ++ + + ++ + + Q Y + + YKLE Sbjct: 293 QQENSNDDMAMGIPGSLSNQPIPQSQAGQTPAAVSRSQAQRKYIYDRNIRHVRYPGYKLE 352 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 ++++AVV+NK + E+ +++ A GI+ +RGD++TI M F Sbjct: 353 KMTVAVVLNKS-------LPVLEQWTPEQQEELKRLIEDAAGIDVKRGDSLTINVMAFAV 405 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 L + + R + L+ +LLV + G+ L + ++ ++ + Sbjct: 406 PTLIDEPVMPWWQEPSTFRWAELLGIGLL----SLLVLWFGVRPLMKRYSRKGSENLPLA 461 Query: 476 GKSILSPPPISSAVTTGLMPNDNI-ALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 S + + T + A + + S +L + + +K + L + Sbjct: 462 ISSASADEALDHVDTGVDGVESSPRAETAFSASSLWESDDLPEQGSGLETKIAH--LQQL 519 Query: 535 IEINEERFAKILRKWARSEI 554 + ER A+++++W S Sbjct: 520 AQSETERTAEVIKQWINSNE 539 >gi|256020214|ref|ZP_05434079.1| flagellar MS-ring protein [Shigella sp. D9] gi|332281376|ref|ZP_08393789.1| lateral flagellar M-ring protein [Shigella sp. D9] gi|332103728|gb|EGJ07074.1| lateral flagellar M-ring protein [Shigella sp. D9] Length = 548 Score = 331 bits (850), Expect = 1e-88, Method: Composition-based stats. Identities = 132/564 (23%), Positives = 248/564 (43%), Gaps = 41/564 (7%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L Q F+ + + L+ + V + + + + Y +LY + E V++I Sbjct: 8 LTQAFPAFRLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQI 67 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L + +RI I VP + K R+ LAA+G+ + SGYEL DK G + Sbjct: 68 VTVLDGEKLTYRIDPQSGQILVPEEALSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSS 126 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINP 182 F+Q + R+LEGE+A++I S+ + +ARVH+ + + SF + +ASV++R Sbjct: 127 QFVQNVRYKRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYG 186 Query: 183 SVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQA 236 + AI HLV+ ++P L V+V+D G LLT A E K I++ Sbjct: 187 AKLNMDQVNAIVHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKD 246 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 IQ + ++ L + +G N+R +V+ EL++ T + Y K+ R + Sbjct: 247 IQDKTHASVANVLDSLVGSGNYRVSVMPELDLSTIDETQEHYGDAPKINR----EESVLD 302 Query: 297 SETSQPE-SAVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHD 350 S+T+Q N P V+ ++ + E + +Y + H Sbjct: 303 SDTNQVAMGVPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHP 362 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 + ++RL++AVV+N+ A + A++ +++ A GI+++RGD +T++ Sbjct: 363 GFAVKRLNVAVVLNQNA-------PALKNWKPEQTAQLTALLNNAAGIDAQRGDNLTLSL 415 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 ++F+ + + + D + A V L+ LL+ F+ ++RL + Sbjct: 416 LNFVPQAVPVEPVIPLWKDDSV---LAWVRLIGCGLLALLLLFFVVRPVMKRLTAVRAP- 471 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 +++P P + + MP + + + +L S+ + K L+ Sbjct: 472 --------VITPEPEAVSEPWIAMPEEE--RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQ 521 Query: 531 LLHMIEINEERFAKILRKWARSEI 554 L M + + R A++LR+W S Sbjct: 522 KLAMSDTD--RVAEVLRQWITSNE 543 >gi|91223544|ref|ZP_01258809.1| flagellar M-ring protein [Vibrio alginolyticus 12G01] gi|91191630|gb|EAS77894.1| flagellar M-ring protein [Vibrio alginolyticus 12G01] Length = 580 Score = 331 bits (850), Expect = 1e-88, Method: Composition-based stats. Identities = 107/554 (19%), Positives = 239/554 (43%), Gaps = 36/554 (6%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 L R +L+L+ I V +++ + F+V P L E ++ + L + I Sbjct: 47 GDLDLLRQVVLVLSISICVALIVMLF--FWVKEPEMRPLGA-YETEELIPVLDYLDQQKI 103 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 ++++ +G+++SV SS ++ + G+ + ++ +G ++ + FG++ +++ Sbjct: 104 NYKL--DGNTVSVESSEYNSIKLGMVRSGV-NQATEAGDDILLQDMGFGVSQRLEQERLK 160 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEA 190 + E ++A+ I+ + + ARV + +P F + +ASV + + K ++ Sbjct: 161 LSRERQLAQAIEEMKQVRKARVLLALPKHSVFVRHNQEASASVFLTLSTGTNLKQQEVDS 220 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKA 248 I +VA+AVP + +TV D G+LL++ + K + ++ + + I+ Sbjct: 221 IVDMVASAVPGMKTSRITVTDQHGRLLSSGSQDPASAARRKEQELERSQEQALREKIDSV 280 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------T 299 L LG N+ + V +++ + +DP++ RS +D + Sbjct: 281 LLPILGYGNYTAQVDIQMDFSAVEQTRKRFDPNTPATRSEYALEDYNNGNMVAGIPGALS 340 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 +QP + ++ Q++ + D V S+ +KE N+E++T + R ++ Sbjct: 341 NQPPADASIPQDVAQMKDGSVMGQGSV----RKESTRNFELDTTISHERKQTGTVARQTV 396 Query: 360 AVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 +V + ++ ++ G +S + I +++ G + RGD + + S+ F E + Sbjct: 397 SVAIKDRRQVNPDTGEVTYTPMSESEINAIRQVLIGTVGFDQGRGDLLNVLSVKFAEPEA 456 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 + S +ALV +V L++ A+++L N + E+ G Sbjct: 457 EQLEEPPIWEHPNFSDWVRWFASALVIIVVVLVLV---RPAMKKLLNPTSDDEDEMYGPD 513 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 L PI + T L+ +D ++SS F S +L N + + + ++ Sbjct: 514 GL---PIGADGETSLIGSD---IESSELFEFGSSIDLP---NLHKDEDVLKAVRALVANE 564 Query: 539 EERFAKILRKWARS 552 E A++++ W Sbjct: 565 PELAAQVVKNWMND 578 >gi|225159031|ref|ZP_03725341.1| flagellar M-ring protein FliF [Opitutaceae bacterium TAV2] gi|224802410|gb|EEG20672.1| flagellar M-ring protein FliF [Opitutaceae bacterium TAV2] Length = 532 Score = 331 bits (850), Expect = 1e-88, Method: Composition-based stats. Identities = 128/547 (23%), Positives = 217/547 (39%), Gaps = 39/547 (7%) Query: 14 GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73 LG + + L L I A + P Y LY +L D I AL + Sbjct: 12 WKQLGLNQRISLVVAALAVIGSVAALVIWSRQPDYQLLYGRLADKDAASIISALQAQGVP 71 Query: 74 FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 +R S G S+ VP++ V + R+ LAA+GLP G+E+FDK FGL+ F+Q R Sbjct: 72 YRASAGGGSVYVPANQVHRLRMDLAAKGLP-GGEGVGFEIFDKGQ-FGLSDFVQRTNYTR 129 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINPS-VYKSAEAI 191 AL+GE+ARTI + G+ ARV IV P+ G +PTASV + P ++ +I Sbjct: 130 ALQGELARTISQLDGVARARVMIVQPENRLLLIDQGVKPTASVFVELTGPRLDTEAVNSI 189 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTA---NEMERNILGKSLSIVQAIQHEIEMNINKA 248 R+LVA AV L V V+D G++L++ ++ + Q ++ + Sbjct: 190 RNLVANAVQGLKPAQVAVVDQKGRVLSSELQDDPTLADASSQMRYRQQVEEYFAKKVESL 249 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308 L +G N V AE++ + E YDPD +V R+ ++D S ++ V V Sbjct: 250 LLPVVGAGNAVVRVSAEIDTEAATRVEERYDPDGQVVRTQTSTEDVTNSSEARSGGVVGV 309 Query: 309 EQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368 N P + +K +YEIN TT + L+ AV + Sbjct: 310 TANATTPPPADQARPTVTNDQTRKNRTLSYEINRTLTNTTRSPGTILGLTAAVFI--APR 367 Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG----DTITITSMDFLENQLFNSGTV 424 G +A + ++ +A + ++V A G+ G + +T+ + F + + + Sbjct: 368 PPAAGGAAPGPRTEAEIAALRQVVVNALGLRPSPGRRIEELVTLQEVPFQAAGVDDR--I 425 Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPP 484 + + + + + V + +L+ F+ L+R H + L PP Sbjct: 426 EQIRTETRVQGWIEAASRYVAVAVAVLIFFIFWRMLKRQHPAPVPVE-------FLDQPP 478 Query: 485 ISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAK 544 ++++ + + L +I+ Sbjct: 479 SGDGTAGQPGAAATGLGGAASRPVLTPEM-----------------LNELIKQKPANVGA 521 Query: 545 ILRKWAR 551 LR W Sbjct: 522 ALRDWMA 528 >gi|261209869|ref|ZP_05924170.1| flagellar M-ring protein FliF [Vibrio sp. RC341] gi|260841055|gb|EEX67580.1| flagellar M-ring protein FliF [Vibrio sp. RC341] Length = 580 Score = 331 bits (850), Expect = 1e-88, Method: Composition-based stats. Identities = 105/559 (18%), Positives = 228/559 (40%), Gaps = 36/559 (6%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 + F L R +L+L+ I V +++ + F+V P L E ++ + L Sbjct: 43 MDFTVGDLDLLRQVVLVLSISICVALIVMLF--FWVREPDMRPLGA-YETEELIPVLDYL 99 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + +++ +G++I VP S ++ + GL + +G E+ + FG++ ++ Sbjct: 100 DQQKQQYKL--DGNTILVPVSDYNSLKLSMVRAGL-NQERQAGDEILMQDMGFGVSQRLE 156 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187 + + E ++A+ I+ + I ARV + +P F + +ASV + + K Sbjct: 157 QERLKLSRERQLAKAIEEMRQINKARVLLALPKQSVFVRQNQEASASVFLSLRTGANLKQ 216 Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE--IEM 243 +A+ +VA+AVP + VTV D G+LL++ + + Q E + Sbjct: 217 EEIDAVVDMVASAVPGMKPSRVTVTDQHGRLLSSGSQDPVSAARRKEQELEKQQEEALRG 276 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE----- 298 I+ L LG+ N+ + V EL+ + V+DP++ RS +D Sbjct: 277 KIDSVLIPILGLGNYTAQVDIELDFSAVEQTRKVFDPNTPATRSEYTLEDYNNGNVVAGV 336 Query: 299 ----TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 ++QP + ++ Q++ + D V S+ KE N+E++T + + Sbjct: 337 PGALSNQPPADASIPQDVAQMKDGSVLGQGSV----HKEATRNFELDTTISHERKQSGVV 392 Query: 355 ERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 R ++AV V ++ + G ++ + I +I+ G + RGD + + SM F Sbjct: 393 NRQTVAVAVKSRSSVNPDTGEVTYTPLSEAEINSIRQILIGTVGYSENRGDLLNVLSMPF 452 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 E ++ V + + + +ALV ++ L++ A+++L N + Sbjct: 453 AEPEVEQIANVPIWENPNFNDWVRWLASALVIIIVVLVLV---RPAMKKLINPTADSDEQ 509 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 + G + G + + + + + + + + Sbjct: 510 MYGPDGMPIGADGETSLIGSEIDSGELFEFGSGIDLPNLHKDEDVLKA---------VRA 560 Query: 534 MIEINEERFAKILRKWARS 552 ++ E A++++ W ++ Sbjct: 561 LVANEPELAAQVVKNWMQN 579 >gi|331671787|ref|ZP_08372583.1| flagellar M-ring protein FliF [Escherichia coli TA280] gi|331070776|gb|EGI42135.1| flagellar M-ring protein FliF [Escherichia coli TA280] Length = 552 Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats. Identities = 130/564 (23%), Positives = 247/564 (43%), Gaps = 37/564 (6%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L Q F+ + + L+ + V + + + + Y +LY + E V++I Sbjct: 8 LTQAFPAFRLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQI 67 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L + +RI I VP + K R+ LAA+G+ + SGYEL DK G + Sbjct: 68 VTVLDGEKLSYRIDPQSGQILVPEDELSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSS 126 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINP 182 F+Q + R+LEGE+A++I S+ + +ARVH+ + + SF + +ASV++R Sbjct: 127 QFVQNVRYKRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYG 186 Query: 183 SVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQA 236 + AI HLV+ ++P L V+V+D G LLT A E K I++ Sbjct: 187 AKLNMDQVNAIVHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKD 246 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 IQ + ++ L + +G N+R +V+ +L++ T + Y K+ R + Sbjct: 247 IQDKTRASVANVLDSLVGTGNYRVSVMPDLDLSTIDETQEHYGDAPKINR----EESVLD 302 Query: 297 SETSQPE-SAVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHD 350 S+T+Q N P V+ ++ + E + +Y + H Sbjct: 303 SDTNQVAMGVPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHP 362 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 + ++RL++AVV+N+ + + A++ +++ A GI+ +RGD +T++ Sbjct: 363 GFAVKRLNVAVVLNQNAPAMKNWKP---EQTAQLTAQLTALLNNAAGIDVQRGDNLTLSL 419 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 ++F+ + + + D + A V L+ LL+ F+ ++RL + Sbjct: 420 LNFVPQAVPVEPIIPLWKDDSV---LAWVRLIGCGLLALLLLFFVVRPVMKRLTAVRAP- 475 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 +++P P + + MP + + + +L S+ + K L+ Sbjct: 476 --------VITPEPEAVSEPWIAMPEEE--RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQ 525 Query: 531 LLHMIEINEERFAKILRKWARSEI 554 L M + + R A++LR+W S Sbjct: 526 KLAMSDTD--RVAEVLRQWITSNE 547 >gi|24374740|ref|NP_718783.1| flagellar MS-ring protein [Shewanella oneidensis MR-1] gi|24349402|gb|AAN56227.1|AE015760_6 flagellar M-ring protein FliF [Shewanella oneidensis MR-1] Length = 553 Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats. Identities = 108/556 (19%), Positives = 222/556 (39%), Gaps = 32/556 (5%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + R + + + + + L + + P Y L K+E ++ ++ L + Sbjct: 14 LGNLGGVDMMRQITMILALAICLALAVFVMIWAQEPEYRPL-GKMETQEMVQVLDVLDKN 72 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 I ++I + + VP + ++ L+ G+ S++ S + + + FG++ M++ Sbjct: 73 KIKYQIDVD--VVKVPEDKYQEVKMMLSRAGI-DSAATSKQDFLTQDSGFGVSQRMEQAR 129 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV-YKSAE 189 + E +AR I+ + + A+V + +P F + A+P+A+V+I + + Sbjct: 130 LKHSQEENLARAIEQLQSVSRAKVILALPKENVFARNTAQPSATVVINTRRGGLGQGEVD 189 Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNINK 247 AI +VA+AV L+ VTV DS G+LL + + + L +VQ + E I+ Sbjct: 190 AIVDIVASAVQGLEPSRVTVTDSNGRLLNSGSQDGVSARARRELELVQQKETEYRTKIDS 249 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVT 307 L+ LG DNF S V ++ + ++PD RS ++ S Sbjct: 250 ILSPILGHDNFTSQVDVSMDFTAVEQTAKRFNPDLPSLRSEMTVENN--STGGSTGGIPG 307 Query: 308 VEQNMPHVSDRKVPLPRSLEN------TDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 N P + + +E N+E++T T + R+S++V Sbjct: 308 ALSNQPPMESNIPQEAATAATESVAAGNSHREATRNFELDTTISHTRQQIGVVRRVSVSV 367 Query: 362 VVN-KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 V+ K G+ A + + L I +++ A G +++RGD + + ++ F++ + + Sbjct: 368 AVDFKPGAAGENGQVARVARTEQELTNIRRLLEGAVGFSAQRGDVLEVVTVPFMDQLVED 427 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG--GKS 478 ++ R + ALV LV L V L+RL D E G G Sbjct: 428 VPAPELWEQPWFWRAVKLGVGALVILVLILAV---VRPMLKRLIYPDRVNMPEDGRLGNE 484 Query: 479 ILSPPPISSAVTTGLM--PNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536 + +A T G++ + + + I + + ++ Sbjct: 485 LAEIEDQYAADTLGMLNTKEAEYSYADDGSILIPNLHKDDDMIKA---------IRALVA 535 Query: 537 INEERFAKILRKWARS 552 E ++++ W + Sbjct: 536 NEPELSTQVVKNWLQD 551 >gi|167614819|ref|ZP_02383454.1| flagellar MS-ring protein [Burkholderia thailandensis Bt4] gi|257141404|ref|ZP_05589666.1| flagellar MS-ring protein [Burkholderia thailandensis E264] Length = 531 Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats. Identities = 116/513 (22%), Positives = 215/513 (41%), Gaps = 22/513 (4%) Query: 45 SPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPS 104 +Y L+ E ++ + AL I +RI + + V S V +AR+ LAA+G+ + Sbjct: 32 QANYKPLFGAREPVQLDDVVSALDAQRIPYRIHPDTGQVLVARSDVARARMMLAARGV-T 90 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + G E D+ + G + F+Q++ R LE E+A++I ++ + ARVH+ + SF Sbjct: 91 AKAAPGLEQIDQDDPLGTSQFVQDVRFRRGLESELAQSIATLDPVERARVHLSIAKSSSF 150 Query: 165 RKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE 221 + +A+ ++ + P + A+ +LVA +VPNL G V+V+D G L+A Sbjct: 151 VMMDGDKSAASVVLTLKPGARLAKEQIAAVINLVAGSVPNLAPGKVSVVDQHGAFLSARV 210 Query: 222 MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD 281 L + I + ++ N+ LA LG NFR +V A +N D + + Sbjct: 211 DLDGDLTGNDEIAARFRDDVTRNVEDLLAPSLGPGNFRVSVTAVVNNDRVEETREQFG-- 268 Query: 282 SKVERSIRLSKDAQRSETSQPESAVTVEQNMPH-VSDRKVPLPRSLENTDKKEEQSNYEI 340 + ++ +A R+E ++ A+ V ++ + D P + + + Sbjct: 269 ----EAPKVMNEATRNEQNRDRVALGVPGSLSNRPVDVPASGPDVDGGSRRNATTRQFAY 324 Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400 + +LE+LS+AVV+N + + + L I+ I+ + GI+ Sbjct: 325 DRNITQIKRGRGQLEKLSVAVVLN-----NAVSPTKGKPWQPDQLRRIDDILRSGLGIDK 379 Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460 +RGD + ++S+DF D L + + AL L G LL+ L L Sbjct: 380 QRGDQLIVSSLDFAAPA---PAEPWWKERDTLEQGGWYLTYALAALFGYLLLARPMLRML 436 Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520 ++ S L P A P+D + + + Sbjct: 437 QQWMQHRYGAPPAAAPASRLQAPEGGDAQAALPAPDDARPPLGAMLPLLDDVELPPADSG 496 Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 V L + E ER A+++++W R++ Sbjct: 497 VEVLIGH---LRSLSEKEPERVAEVVKQWIRND 526 >gi|83718135|ref|YP_438373.1| flagellar MS-ring protein [Burkholderia thailandensis E264] gi|83651960|gb|ABC36024.1| flagellar M-ring protein FliF [Burkholderia thailandensis E264] Length = 551 Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats. Identities = 116/513 (22%), Positives = 215/513 (41%), Gaps = 22/513 (4%) Query: 45 SPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPS 104 +Y L+ E ++ + AL I +RI + + V S V +AR+ LAA+G+ + Sbjct: 52 QANYKPLFGAREPVQLDDVVSALDAQRIPYRIHPDTGQVLVARSDVARARMMLAARGV-T 110 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + G E D+ + G + F+Q++ R LE E+A++I ++ + ARVH+ + SF Sbjct: 111 AKAAPGLEQIDQDDPLGTSQFVQDVRFRRGLESELAQSIATLDPVERARVHLSIAKSSSF 170 Query: 165 RKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE 221 + +A+ ++ + P + A+ +LVA +VPNL G V+V+D G L+A Sbjct: 171 VMMDGDKSAASVVLTLKPGARLAKEQIAAVINLVAGSVPNLAPGKVSVVDQHGAFLSARV 230 Query: 222 MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD 281 L + I + ++ N+ LA LG NFR +V A +N D + + Sbjct: 231 DLDGDLTGNDEIAARFRDDVTRNVEDLLAPSLGPGNFRVSVTAVVNNDRVEETREQFG-- 288 Query: 282 SKVERSIRLSKDAQRSETSQPESAVTVEQNMPH-VSDRKVPLPRSLENTDKKEEQSNYEI 340 + ++ +A R+E ++ A+ V ++ + D P + + + Sbjct: 289 ----EAPKVMNEATRNEQNRDRVALGVPGSLSNRPVDVPASGPDVDGGSRRNATTRQFAY 344 Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400 + +LE+LS+AVV+N + + + L I+ I+ + GI+ Sbjct: 345 DRNITQIKRGRGQLEKLSVAVVLN-----NAVSPTKGKPWQPDQLRRIDDILRSGLGIDK 399 Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460 +RGD + ++S+DF D L + + AL L G LL+ L L Sbjct: 400 QRGDQLIVSSLDFAAPA---PAEPWWKERDTLEQGGWYLTYALAALFGYLLLARPMLRML 456 Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520 ++ S L P A P+D + + + Sbjct: 457 QQWMQHRYGAPPAAAPASRLQAPEGGDAQAALPAPDDARPPLGAMLPLLDDVELPPADSG 516 Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 V L + E ER A+++++W R++ Sbjct: 517 VEVLIGH---LRSLSEKEPERVAEVVKQWIRND 546 >gi|306813320|ref|ZP_07447513.1| flagellar MS-ring protein [Escherichia coli NC101] gi|305854083|gb|EFM54522.1| flagellar MS-ring protein [Escherichia coli NC101] Length = 548 Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats. Identities = 128/564 (22%), Positives = 245/564 (43%), Gaps = 41/564 (7%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L Q F+ + L+ + V + + + + Y +LY + E V++I Sbjct: 8 LTQAFPAFRLRLVDNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQI 67 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L + + I I VP + K R+ LAA+G+ + SGYEL DK G + Sbjct: 68 VTVLDGEKLTYCIDPQSGQILVPEDELSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSS 126 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINP 182 F+Q + R+LEGE+A++I S+ + +ARVH+ + + SF + +ASV++R Sbjct: 127 QFVQNVRYKRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYG 186 Query: 183 SVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQA 236 + AI HLV+ ++P L V+V+D G LLT A E K I++ Sbjct: 187 AKLNMDQVNAIVHLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKD 246 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 IQ + ++ L + +G N+R +V+ +L++ T + Y K+ R + Sbjct: 247 IQDKTRASVANVLDSLVGTGNYRVSVMPDLDLSTIDETQEHYGDAPKINR----EESVLD 302 Query: 297 SETSQPE-SAVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHD 350 S+T+Q N P ++ ++ + E + +Y + H Sbjct: 303 SDTNQVAMGVPGSLSNRPPIAANQMSNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHP 362 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 + ++RL++AVV+N+ A + ++ +++ A GI+++RGD +T++ Sbjct: 363 GFAVKRLNVAVVLNQNA-------PALKNWKPEQTTQLTALLNNAAGIDAQRGDNLTLSL 415 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 ++F+ + + + D + A V L+ LL+ F+ ++RL + Sbjct: 416 LNFVPQAVPVEPVIPLWKDDSV---LAWVRLIGCGLLALLLLFFVVRPVMKRLTAVRAP- 471 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 +++P P + + MP + + + +L S+ + K L+ Sbjct: 472 --------VITPEPEAVSEPWIAMPEEE--RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQ 521 Query: 531 LLHMIEINEERFAKILRKWARSEI 554 L M + + R A++LR+W S Sbjct: 522 KLAMSDTD--RVAEVLRQWITSNE 543 >gi|238762371|ref|ZP_04623342.1| Flagellar M-ring protein [Yersinia kristensenii ATCC 33638] gi|238699356|gb|EEP92102.1| Flagellar M-ring protein [Yersinia kristensenii ATCC 33638] Length = 541 Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats. Identities = 125/560 (22%), Positives = 250/560 (44%), Gaps = 34/560 (6%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +LD++ Q + LG+ + IL + + + + + S Y L+ E V + Sbjct: 1 MLDKIKQQLPA-IRLGKNQKSILMGAMALLVTGAIIFSLWRGSQGYTALFGSQEHIPVTQ 59 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + L I +RI+ + I V + +G+ARI LAA+G+ +++ +GYEL D+ G Sbjct: 60 VVEVLDGEAIAYRINPDNGQILVAENQLGRARILLAAKGI-TATLPTGYELMDQETMLGS 118 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRAIN 181 + F+Q + R+LEGE+A++I +++ + ARVH+ M + SF + +ASV++R Sbjct: 119 SQFIQNVRYKRSLEGELAQSIMALTAVDYARVHLGMSEASSFAISNRSESSASVILRLKY 178 Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQ 235 K AI LVA ++P + +V V+D G+LL+ AN + + Sbjct: 179 GQTLKTEQVGAIVQLVAGSIPAMKAANVRVVDQHGELLSEAYQANSKGMTNVKSGAELAH 238 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 +Q E +I L++ +GV+N+R +V +L++ + Y + +V S + Sbjct: 239 YLQSTTEKSIANLLSSVVGVNNYRISVATQLDLSRVEETLERYGAEPRV------SDENI 292 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 + E + A+ + ++ + + + + + Q Y + H +KLE Sbjct: 293 QQENGNEDMAMGIPGSLSNQPSAQPRNTNAPAMMSRSQAQRKYAYDRDIRHVRHPGFKLE 352 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 ++++AV++NK A L E+ +++ A GI+ +RGD++T+ + F Sbjct: 353 KMTVAVILNKSA-------PALDKWTAEQLNELKRLIEDAAGIDVKRGDSLTLNMLAFTA 405 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR-RLHNIDDAKKGEV 474 + + + D + +A + + + G+ L RL DD Sbjct: 406 PIVIEESVIP-WWQDATTFRWAEIAGIGLLSLLF---LLFGVRPLMARLSRPDDKHATLA 461 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 ++ SP ++A +G + S +D NL + + +K + L + Sbjct: 462 MSENADSPNATNTAGESGTATESRLPASSFKED-----DNLPPQGSGLDTKIAH--LQQL 514 Query: 535 IEINEERFAKILRKWARSEI 554 + ER A+++++W + Sbjct: 515 AQSETERVAEVIKQWINNNE 534 >gi|323703169|ref|ZP_08114822.1| flagellar M-ring protein FliF [Desulfotomaculum nigrificans DSM 574] gi|323531828|gb|EGB21714.1| flagellar M-ring protein FliF [Desulfotomaculum nigrificans DSM 574] Length = 514 Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats. Identities = 131/563 (23%), Positives = 237/563 (42%), Gaps = 65/563 (11%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 +LD+L Q ++ T+ + ++ILA +++ + ++ P Y L LE D Sbjct: 5 NLLDKLKQRWRE-TNQNKKALIILAGAVVLAGVFYLVLTL--TRPRYAVLLGDLEPRDAG 61 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L I ++++D G +I VP V + RI LA++GL + G+ELFDK + FG Sbjct: 62 NIVAQLESDKIPYQLTDQGKTIMVPEDQVDEVRIKLASKGL-LNGMGQGFELFDK-SKFG 119 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 T F Q+++ RAL+ E+ RTI S+ G+ ARVH+V+P F P+ASV+I+ Sbjct: 120 ETDFEQQVSYQRALQEELRRTITSVEGVEQARVHLVIPTKSVFLDDQGTPSASVVIKLKP 179 Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---------ANEMERNILGKS 230 + K + + L+ +V L +V ++D+ G +L A + + Sbjct: 180 GASLKPEQVKGLNDLIIGSVEGLKPENVHIIDTEGHVLNDFLKDSSDVAGAFGGTAVERQ 239 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV-ERSIR 289 I +A + E+E + + L LG + + V A+L+ + QQ P V ERS + Sbjct: 240 QQIRRAYEKELENRVQQMLTKLLGPNKAVAMVTADLDFNQQQTNTTEVLPGPVVSERSTK 299 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 S + + +A Q++P +++ + + K ++ NY+ T+ + Sbjct: 300 ESGNDAGGGGTAGSTAQMPGQSVPGINNGQ-------SSYTKSDDIKNYQNGTRVQSVVQ 352 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 K+ RLS AVV+++ +I IV+AA G N +RGD IT++ Sbjct: 353 APGKVLRLSTAVVLDESVKNLDK-------------TQIQDIVTAAIGFNPQRGDQITVS 399 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 +M F ++L + ++ + +I A V LL T L Sbjct: 400 TMTFDHSELDLAKEMEQEAKQQDNIRLYLIIGAAAAGVLLLLTTIFMLI----------- 448 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 L+ + +D ++ + + ++ Sbjct: 449 -----------RRRRRRQKAEQQLLQAQDAVVDEVAEEPPAPKWEIPPPVDKQKE----- 492 Query: 530 RLLHMIEINEERFAKILRKWARS 552 L + E A++L+ W + Sbjct: 493 -LKKIAEERPADIAQVLKVWLKE 514 >gi|94968680|ref|YP_590728.1| flagellar M-ring protein FliF [Candidatus Koribacter versatilis Ellin345] gi|94550730|gb|ABF40654.1| flagellar M-ring protein FliF [Candidatus Koribacter versatilis Ellin345] Length = 529 Score = 331 bits (848), Expect = 3e-88, Method: Composition-based stats. Identities = 120/530 (22%), Positives = 226/530 (42%), Gaps = 14/530 (2%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 Q+ F +S T T+ L LA L L + P LY L+ D + Sbjct: 12 KQIANFLRSLTG---TQKLWLAFAGLTVTTLLYVFVTMLAKPEMKPLYSGLQAQDAQALG 68 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L+ I+++IS +G+S+SV + AR+ +A+ G P S G+ELFDK N +G + Sbjct: 69 SKLAAQKIEYQISPDGTSVSVAVDKLDSARLLVASDGGPKSGR-MGFELFDKPN-WGSSD 126 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 F +++ RALEGE+ RT+ +I G+ A RVH+V+P F ASV+++ Sbjct: 127 FSEKVNYQRALEGELERTLSTIDGVEAVRVHLVLPRESLFADKREEAKASVILKLRGAMS 186 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN 244 S AIR +A AV L VTV+D+ L + + G + + + Sbjct: 187 PNSDVAIRRFLAGAVEGLRPEGVTVIDAENNL---PIGKTSSDGSGVESERD--QALAKE 241 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 + + L +GV R++V E ++ + + YDP+S +++ S++ +Q Sbjct: 242 LVRTLEPIVGVGGARASVHVEYDVTSGDETQETYDPNSTAALTMQKSEETVGGTLAQ--G 299 Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 N+P+ + + K E + Y +N T +++R++ A++V+ Sbjct: 300 VPGTASNIPNTQSPSKSTNSADSQSSKSESGT-YAVNRVVRHTLLPAGRIKRITAALLVD 358 Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN-QLFNSGT 423 +T+ +G ++ + L +I+ + A+ GIN RGD + + ++ F EN Sbjct: 359 DADVTDAMGNTSRAKRSPEELKKIDSLARASLGINDARGDVLAVENLSFHENKPEVLVPL 418 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 ++ + + + F+ + + + L+V + L +RR + + + Sbjct: 419 TKLDKVARVGKQFSWTLRYALIALLFLIVYVVVLRPVRRQVVLSLKQLPSRPANDAVLNG 478 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 + G+ D ++ + ++ QS LR Sbjct: 479 NTGKVLPQGVESADPAVRQAATLKKQLIEKAKAEPASAGQLVQSWLREEE 528 >gi|116619481|ref|YP_821637.1| flagellar M-ring protein FliF [Candidatus Solibacter usitatus Ellin6076] gi|116222643|gb|ABJ81352.1| flagellar M-ring protein FliF [Candidatus Solibacter usitatus Ellin6076] Length = 570 Score = 330 bits (847), Expect = 3e-88, Method: Composition-based stats. Identities = 121/544 (22%), Positives = 212/544 (38%), Gaps = 38/544 (6%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + + L+ L D I L E+ +++R+ + G S+ VPS+ + R+ +A G Sbjct: 33 WRKEGDFHPLFTGLSAEDAAGIVQKLKESGVEYRLPEGGGSVLVPSNKLADLRLTMAGIG 92 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+ELFDKVN G T F + I RALEGE+ RT+ +++ + ARVH+ P Sbjct: 93 LPKSGR-IGFELFDKVN-LGATEFTEHINYRRALEGELERTVMALAEVETARVHLTFPKD 150 Query: 162 GSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + ASV++R + ++ AI HLV +AV L G V+VLD G LL Sbjct: 151 SVFLEAQQPAKASVLVRIRPGAKLAPQNVLAITHLVGSAVEGLSPGAVSVLDMNGNLLNR 210 Query: 220 N-----EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 + +L ++ E+ +N L+ LG + FR V E + + Sbjct: 211 PKAPGLQDGSEPSAATLDYRHQVETELLAKVNATLSPLLGPEKFRVGVSLECDFTGGEQS 270 Query: 275 EIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEE 334 E +DP V + + ++D+ T+ +P + R T + E Sbjct: 271 EETFDPARSVMVTSQRTEDSVGGTTA--AGVPGTASTLPRPTSRPATG---ANKTVRTTE 325 Query: 335 QSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS---ADQGKIDSYLAEINKI 391 +Y+ + T + + ++S+AV+V++ E S L I + Sbjct: 326 NISYQSSRTVKKTHLPSGVVRKMSLAVLVDQDVSWEKDKNSFKRVLVPPSPEKLKVIRDL 385 Query: 392 VSAATGINSRRGDTITITSMDFLENQLFN------------SGTVQVSFMDILSRHFATV 439 V+ TG + RGD + I ++ F G+ L R + Sbjct: 386 VAGITGFSQERGDQLVIETLPFETTLQLEPPVAAVPVPPAKPGSPLPGLPIPLDRKTLLI 445 Query: 440 INALVFLVGTLLVTFLGLHALRRLH--NIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497 + + + RR +D A + + + S+ + T + Sbjct: 446 AAGVAAAMIVFGAGLFVMRRKRRKQTATVDMASRPTLPAAASQPGAAPSTELLTQGQIEE 505 Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR-------LLHMIEINEERFAKILRKWA 550 + + +D + Q+ + ++ + L I E ++LR W Sbjct: 506 QLESQLAQRDALQAKMDAQALTSLKLAPVITKKAEVLAKHLREKIAKEPEISVQVLRTWI 565 Query: 551 RSEI 554 R E Sbjct: 566 REEE 569 >gi|294140203|ref|YP_003556181.1| flagellar M-ring protein FliF [Shewanella violacea DSS12] gi|293326672|dbj|BAJ01403.1| flagellar M-ring protein FliF [Shewanella violacea DSS12] Length = 571 Score = 330 bits (847), Expect = 3e-88, Method: Composition-based stats. Identities = 98/532 (18%), Positives = 221/532 (41%), Gaps = 30/532 (5%) Query: 37 MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIH 96 + + P Y L +++ ++ ++ L + I+++I+ + I VP ++ Sbjct: 57 VFIMLWAQEPEYRPL-GQMDTQEMVKVLDVLDKNKINYQINVD--VIKVPEDQYQAVKLL 113 Query: 97 LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHI 156 L+ +G+ S+SS + Y + + FG++ M++ + E +AR I+ + I A+V + Sbjct: 114 LSREGIDSASSQNDY--LSQDSGFGVSQRMEQARLKHSQELNLARAIEELRSISRAKVIL 171 Query: 157 VMPDMGSFRKIGARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 +P F + A+P+A+V++ + + +A+ +VA+AV L VTV DS G+ Sbjct: 172 AIPKENVFSRNRAKPSATVVLNVRRGGLGQEEVDAVVDIVASAVQGLIPTRVTVTDSNGR 231 Query: 216 LLTANEME--RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI 273 LL + + + L +VQ + E + L LG +NF S V ++ + Sbjct: 232 LLNSGSQDAVSARARRELELVQQKEVEYRTKVQSILMPILGPENFTSQVDVTMDFTAVEQ 291 Query: 274 REIVYDPDSKVERSIRLSKDAQRSETSQP-----ESAVTVEQNMPHVSDRKVPLPRSLEN 328 Y+PD RS ++ ++ + +E ++P + + Sbjct: 292 TSKRYNPDLPALRSEMTVENNSDGGSASGIPGALSNQPPMESDIPQDALNAEETSSASRG 351 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR-LTEVLGRSADQGKIDSYLAE 387 + +E N+E++T T + R+S++V V+ G+ + + L+ Sbjct: 352 SSHREATRNFELDTTISHTRQQVGTVRRVSVSVAVDYKSGAAGEDGQINRVPRTELELSN 411 Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447 I +++ A G +++RGD + + ++ F++ L + ++ R + ++ L Sbjct: 412 IRRLLEGAVGFSTQRGDVLEVVTVPFMDQLLEEAPAPELWEQPWFWRALKLGVGGMIILA 471 Query: 448 GTLLVTFLGLHALRRLHNIDDAKKGEVG--GKSILSPPPISSAVTTGLM--PNDNIALDS 503 L+ F+ L+RL D A + G + ++ T G++ P + Sbjct: 472 ---LILFIVRPMLKRLIYPDSANIPDEPKFGDELAEIEDQFASDTLGMLNRPEAEYSYAD 528 Query: 504 SNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + I + + ++ E ++++ W + + + Sbjct: 529 DGSILIPDLHKDDDMIKA---------IRALVANEPELSTQVIKGWLQQDEQ 571 >gi|117919790|ref|YP_868982.1| flagellar MS-ring protein [Shewanella sp. ANA-3] gi|117612122|gb|ABK47576.1| flagellar M-ring protein FliF [Shewanella sp. ANA-3] Length = 561 Score = 330 bits (847), Expect = 3e-88, Method: Composition-based stats. Identities = 109/561 (19%), Positives = 222/561 (39%), Gaps = 31/561 (5%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + S + R + + + + + L + + P Y L K+E ++ ++ Sbjct: 17 ENKSGVLGSLGGVDMMRQITMILALAICLALAVFVMIWAQEPEYRPL-GKMETQEMVQVL 75 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L + I ++I + + VP + ++ L+ G+ +S + S + + + FG++ Sbjct: 76 DVLDKNKIKYQIEVD--VVKVPEDKYQEVKMMLSRAGV-NSPAASTQDFLTQDSGFGVSQ 132 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 M++ + E +AR I+ + + A+V + +P F + ++P+A+V+I + Sbjct: 133 RMEQARLKHSQEENLARAIEQLQSVSRAKVILALPKENVFARNTSQPSATVVINTRRGGL 192 Query: 185 -YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEI 241 +AI +VA+AV L+ VTV DS G+LL + + + L +VQ + E Sbjct: 193 GQGEVDAIVDIVASAVQGLEPSRVTVTDSNGRLLNSGSQDGISARARRELELVQQKEAEY 252 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 I+ L+ LG DNF S V ++ + ++PD RS ++ S Sbjct: 253 RTKIDSILSPILGPDNFTSQVDVSMDFTAVEQTAKRFNPDLPSLRSEMTVENN--STGGS 310 Query: 302 PESAVTVEQNMPHV-----SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 N P + D +E N+E++T T + R Sbjct: 311 TGGIPGALSNQPPMESNIPQDATKATESVTAGNSHREATRNFELDTTISHTRQQIGVVRR 370 Query: 357 LSIAVVVN-KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 +S++V V+ K G+ A + + L I +++ A G +++RGD + + ++ F++ Sbjct: 371 VSVSVAVDFKPGAAGENGQVARVARTEQELTNIRRLLEGAVGFSAQRGDVLEVVTVPFMD 430 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + + ++ R I ALV LV L V L+RL D E Sbjct: 431 QLVEDVPAPELWEQPWFWRAVKLGIGALVILVLILAV---VRPMLKRLIYPDSVNMPEDS 487 Query: 476 --GKSILSPPPISSAVTTGLM--PNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 G + +A T G++ + + + I + + Sbjct: 488 RLGNELAEIEDQYAADTLGMLNTKEAEYSYADDGSILIPNLHKDDDMIKA---------I 538 Query: 532 LHMIEINEERFAKILRKWARS 552 ++ E ++++ W + Sbjct: 539 RALVANEPELSTQVVKNWLQD 559 >gi|170021374|ref|YP_001726328.1| flagellar MS-ring protein [Escherichia coli ATCC 8739] gi|169756302|gb|ACA79001.1| flagellar M-ring protein FliF [Escherichia coli ATCC 8739] Length = 548 Score = 330 bits (847), Expect = 3e-88, Method: Composition-based stats. Identities = 131/564 (23%), Positives = 247/564 (43%), Gaps = 41/564 (7%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L Q F+ + + L+ + V + + + + Y +LY + E V++I Sbjct: 8 LTQAFPAFRLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQI 67 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L + +RI I VP + K R+ LAA+G+ + SGYEL DK G + Sbjct: 68 VTVLDGEKLSYRIDPQSGQILVPEDELSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSS 126 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINP 182 FMQ + R+LEGE+A++I S+ + +ARVH+ + + SF + +ASV++R Sbjct: 127 QFMQNVRYKRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYG 186 Query: 183 SVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQA 236 + AI HLV+ ++P L V+V+D G LLT A E K I++ Sbjct: 187 AKLNMDQVNAIVHLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKD 246 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 IQ + ++ L + +G N+R +V+ +L++ T + Y K+ R + Sbjct: 247 IQDKTRASVANVLDSLVGSRNYRVSVMPDLDLSTIDETQEHYGDAPKINR----EESVLD 302 Query: 297 SETSQPE-SAVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHD 350 S+T+Q N P V+ ++ + E + +Y + H Sbjct: 303 SDTNQVAMGVPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHP 362 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 + ++RL++AVV+N+ A + ++ +++ A GI+++RGD +T++ Sbjct: 363 GFAVKRLNVAVVLNQNA-------PALKNWKPEQTTQLTALLNNAAGIDAQRGDNLTLSL 415 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 ++F+ + + + D + A V L+ LL+ F+ ++RL + Sbjct: 416 LNFVPQVVPVEPVIPLWKDDSV---LAWVRLIGCGLLALLLLFFVVRPVMKRLTAVRAP- 471 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 +++P P + + MP + + + +L S+ + K L+ Sbjct: 472 --------VITPEPEAVSEPWIAMPEEE--RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQ 521 Query: 531 LLHMIEINEERFAKILRKWARSEI 554 L M + + R A++LR+W S Sbjct: 522 KLAMSDTD--RVAEVLRQWITSNE 543 >gi|89056671|ref|YP_512122.1| flagellar MS-ring protein [Jannaschia sp. CCS1] gi|88866220|gb|ABD57097.1| flagellar M-ring protein FliF [Jannaschia sp. CCS1] Length = 583 Score = 330 bits (847), Expect = 3e-88, Method: Composition-based stats. Identities = 143/581 (24%), Positives = 242/581 (41%), Gaps = 44/581 (7%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +L+ LL+ + GR R L++ + + ++L + R + P + LY L+ + Sbjct: 16 VLNALLEIWNGMN--GRRRGLLIGGIAALAVVLVILTRI-ASQPSFQLLYSGLDPAAAGE 72 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + AL+ + RI +G I V ++ + R+ LA +GLP++ GYEL D ++ FG Sbjct: 73 VVDALAARGVAHRI--DGDQIFVDATQRDELRMALAGEGLPANGPQ-GYELLDSLSGFGT 129 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 TS M + RA EGE++RTI + I AARVHI P F+ TASV IR + Sbjct: 130 TSQMFDAAYWRAKEGELSRTILASPAIRAARVHIANPSSDPFQPTNEV-TASVAIRPASG 188 Query: 183 SVYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEI 241 + A A+R+LVA++VP L +VTV+D+ + + + + +Q + Sbjct: 189 GLAPGHAHALRYLVASSVPGLRPENVTVIDADSGQVLGGQGQMTPAADAAGRATTLQQNV 248 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 E LAA +G N V EL + I E V DP+S+V + ++ + T Sbjct: 249 ER----LLAARVGPSNAVVQVSVELETARETILERVIDPESRVIIATDT-EEMDNASTDG 303 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 + VTV N+P S T + E+ ++++ + + R+++AV Sbjct: 304 AAAGVTVASNLPD--GDGAAGEGSSAQTTESRERVTFDMSELQREVEREPGDIRRITVAV 361 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 +VN G + + + L + ++V +A G + RGD +TI SM F + + Sbjct: 362 LVNGVEEINASGVAETIPRPAAELDALTELVRSAVGYDEARGDIVTIQSMAF--DAAAAT 419 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR------------RLHNIDDA 469 + F D L+ ++ L+ L + F L L L + Sbjct: 420 ELTEAGFADRLNLDVGQIVQTLLLAAVALAIAFGLLRPLLARSGGDSLNTLPPLEPTNGL 479 Query: 470 KKGEVGGKSILSPPPISSAVTTGL------MPNDNIALDSSNQDIFSHSRNLQSRINS-- 521 G S + P +S P + L + +Q + L + Sbjct: 480 PAPSDGAVSGDTSLPTTSTADVPEITMASTAPKELPPLPAVSQMGSAFDDALPMMMAGSL 539 Query: 522 -------YVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 RL +I+ EE +ILR W + E Sbjct: 540 PGDLEQNLEDMDPVDRLRLLIQEREEETVQILRSWMNEDEE 580 >gi|187778748|ref|ZP_02995221.1| hypothetical protein CLOSPO_02343 [Clostridium sporogenes ATCC 15579] gi|187772373|gb|EDU36175.1| hypothetical protein CLOSPO_02343 [Clostridium sporogenes ATCC 15579] Length = 526 Score = 330 bits (846), Expect = 4e-88, Method: Composition-based stats. Identities = 104/566 (18%), Positives = 222/566 (39%), Gaps = 56/566 (9%) Query: 4 LDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 +++L +FFK T + + + + + L I +A + Y L+ ++ +D Sbjct: 1 MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + L + ++ ++ G++I VP V + R+ + ++ +P ++ + G+E+ DK Sbjct: 61 SGAVLQKLKDKKVEAKVE--GNNILVPKDQVDELRMQMLSE-VPLTNGSQGFEILDKSQ- 116 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 FG T +I RAL+GE+ RTI+ + +RVH+V+P+ +F K ASV + Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNSRVHLVLPEETAFVKETQPGRASVTLNL 176 Query: 180 INPSV--YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--------EMERNILGK 229 + ++I LV+ +V N+ +V V+D+ LLT N E K Sbjct: 177 KKGQTISKEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLTKNLFDASGSLEEATTSAEK 236 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 + + + +++ + L A G D + + +L+ D + + YDP + V Sbjct: 237 QQQLQKNYEKDLQNRLVSMLEAVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNVVVSEHS 296 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 + + Q + + V+ NM +R E + + E NYEI+ + Sbjct: 297 IKEKNQNNADGNNTNGSIVDNNM---VNRTTQNNNGSETSSRDETTKNYEISKTQQDSIK 353 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 ++RL+ ++V++ + + + +A G + +RGD I+I Sbjct: 354 APGSVKRLTASIVLDGN-------------IDEETRTAVRNLAVSAIGYDEKRGDAISIE 400 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 + F + + L LL+ + +++ N ++ Sbjct: 401 GLPFDTAAKDKVKKDLEDMQKAEKTKERIKLFTAIGLGVLLLLGAIIFFVIKKRKNDEEY 460 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 ++ E G +I +D S + + + + K Sbjct: 461 EEYEEGL---------------------DILIDDSGSETKQIPKFKPIDLEAQDEKTHVE 499 Query: 530 -RLLHMIEINEERFAKILRKWARSEI 554 + + ++ A+I++ W + Sbjct: 500 NEIRKYAKDKPDQVAEIIKSWLAEDE 525 >gi|260866399|ref|YP_003232801.1| putative lateral flagellar basal-body M-ring and collar protein [Escherichia coli O111:H- str. 11128] gi|257762755|dbj|BAI34250.1| predicted lateral flagellar basal-body M-ring and collar protein [Escherichia coli O111:H- str. 11128] gi|323178508|gb|EFZ64086.1| flagellar M-ring protein FliF [Escherichia coli 1180] Length = 548 Score = 330 bits (846), Expect = 4e-88, Method: Composition-based stats. Identities = 131/564 (23%), Positives = 244/564 (43%), Gaps = 41/564 (7%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L Q F+ + + L+ + V + + + + Y +LY + E V++I Sbjct: 8 LTQAFPAFRLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQI 67 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L + +RI I VP + K R+ LAA+G+ + SGYEL DK G Sbjct: 68 VTVLDGEKLTYRIDPQSGQILVPEEALSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSR 126 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINP 182 F+Q + R+LEGE+A++I S+ + +ARVH+ + + SF + +ASV++R Sbjct: 127 QFVQNVRYKRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYG 186 Query: 183 SVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQA 236 + AI HLV+ ++P L V+V+D +G LLT A E K I++ Sbjct: 187 AKLNMDQVNAIVHLVSGSIPGLHASKVSVVDQSGNLLTDGIGAGEAVSAATRKRDQILKD 246 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 IQ + ++ L + +G N+R +V+ +L++ T + Y K+ R + Sbjct: 247 IQDKTHASVANVLDSLVGSGNYRVSVMPDLDLSTIDETQEHYGDAPKINR----EESVLD 302 Query: 297 SETSQPE-SAVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHD 350 S+T+Q N P V+ ++ + E + +Y + H Sbjct: 303 SDTNQVAMGVPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHP 362 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 + ++RL++AVV+N+ A + A++ +++ A GI+++RGD +T++ Sbjct: 363 GFAVKRLNVAVVLNQNA-------PALKNWKPEQTAQLTALLNNAAGIDAQRGDNLTLSL 415 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 ++F+ + + + D + A V L+ LL+ F+ ++RL + Sbjct: 416 LNFVPQAVPVEPIIPLWKDDSV---LAWVRLIGCGLLALLLLFFVVRPVMKRLTAVR--- 469 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 P S AV+ + + + +L S+ + K L+ Sbjct: 470 --------APIITPESEAVSEPWIAMPEEERKNVDLPSLPGDDSLPSQSSGLEVKLEFLQ 521 Query: 531 LLHMIEINEERFAKILRKWARSEI 554 L M + + R A++LR+W S Sbjct: 522 KLAMSDTD--RVAEVLRQWITSNE 543 >gi|238752878|ref|ZP_04614343.1| Flagellar M-ring protein [Yersinia rohdei ATCC 43380] gi|238708917|gb|EEQ01170.1| Flagellar M-ring protein [Yersinia rohdei ATCC 43380] Length = 541 Score = 330 bits (846), Expect = 4e-88, Method: Composition-based stats. Identities = 127/562 (22%), Positives = 248/562 (44%), Gaps = 32/562 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +L+++ Q S T + + +L + + + + +S Y L+ E V + Sbjct: 1 MLEKIKQKLSS-TKMDNNQKNLLMGAAAILVTGAIIFSLWRSSQGYTALFGSQENIPVAQ 59 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + L + I +RI+ + + V + +GKARI LAA+G+ +++ GYEL DK G Sbjct: 60 MVEVLDQEAIAYRINPDNGQVLVAENQLGKARILLAAKGI-TATLPVGYELMDKETMLGS 118 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRAIN 181 + F+Q + R+LEGE+A++I +++ + ARVH+ M + SF A +ASV++R Sbjct: 119 SQFIQSVRYKRSLEGELAQSIMALTAVDYARVHLGMSEASSFAISNRAESSASVVLRLKY 178 Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQ 235 K AI LVA ++P + +V V+D G+LL+ AN + + Sbjct: 179 GQALKPEQVGAIVQLVAGSMPGIKAANVRVVDQHGELLSEAYQANSSGMPSVKSGADLAH 238 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 +Q E +I L++ +G +N+R +V +L++ + Y P+ R+S + Sbjct: 239 YLQSTTEKSIANLLSSVVGANNYRISVATQLDLSRIEETLERYGPEP------RISDENI 292 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 + E + + A+ V ++ + + + + + Q Y + H +KL+ Sbjct: 293 QQENNNDDMAMGVPGSLSNQPVAQPGNMTAPTAVSRSQAQRKYTYDRDIRHVRHPGFKLD 352 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 ++++AV++NK A + LAE+ +++ A GI+ +RGD++T+ + F Sbjct: 353 KMTVAVILNKSA-------PALENWAPEQLAELKRLIEDAAGIDVKRGDSLTLNMLAFTA 405 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + + + D + +A +I + + G+ L + D + Sbjct: 406 PTVMEESVIP-WWQDPTTFRWAEIIGIGLLSLLF---LLFGVRPLMKRLARRDQQLVNSA 461 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 I T + SS F S NL + + +K S L+ L Sbjct: 462 SAEESENAGIIETATDSSTSLEQTLSGSS----FQESDNLPPQGSGLETKISHLQKLAQS 517 Query: 536 EINEERFAKILRKWARSEIEDR 557 E ER A+++++W + + Sbjct: 518 ET--ERVAEVIKQWINNNERTK 537 >gi|188492056|ref|ZP_02999326.1| flagellar M-ring protein FliF [Escherichia coli 53638] gi|188487255|gb|EDU62358.1| flagellar M-ring protein FliF [Escherichia coli 53638] Length = 548 Score = 330 bits (846), Expect = 4e-88, Method: Composition-based stats. Identities = 129/564 (22%), Positives = 243/564 (43%), Gaps = 41/564 (7%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L Q F+ + + L+ + V + + + ++ Y + Y + E V++I Sbjct: 8 LTQAFPAFRLRLADNKRWALMAGVGLAVAATAIIVSVLWTSNRGYVSFYGRQENLPVSQI 67 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L + +RI I VP + K R+ LAA+G+ + SGYEL DK G + Sbjct: 68 VSVLDGEKLTYRIDPQSGQILVPEDELSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSS 126 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINP 182 F+Q + R+LEGE+A++I S+ + +ARVH+ + + SF + +ASV++R Sbjct: 127 QFVQNVRYKRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDVPQNSASVVVRLHYG 186 Query: 183 SVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQA 236 + AI HLV+ ++P L V+V+D G LLT A E K I++ Sbjct: 187 AKLNMDQVNAIVHLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKD 246 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 IQ + ++ L + +G N+R +V+ +L++ T + Y K+ R + Sbjct: 247 IQDKTRASVANVLDSLVGTGNYRVSVMPDLDLSTIDETQEHYGDAPKINR----EESVLD 302 Query: 297 SETSQPE-SAVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHD 350 S+T+Q N P V+ ++ + E + +Y + H Sbjct: 303 SDTNQVAMGVPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHP 362 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 + ++RL++AVV+N+ A + A++ +++ A GI+++RGD +T++ Sbjct: 363 GFAVKRLNVAVVLNQ-------DAPALKNWKPEQTAQLTALLNNAAGIDAQRGDNLTLSL 415 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 ++F+ + + + D + A V L+ LL+ F+ ++RL + Sbjct: 416 LNFVPQAVPVEPIIPLWKDDSV---LAWVRLIGCGLLALLLLFFVVRPVMKRLTAVR--- 469 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 P AV+ + + + +L S+ + K L+ Sbjct: 470 --------APVITPEPEAVSEPWIAMQEEERKNVDLPSLPGDDSLPSQSSGLEVKLEFLQ 521 Query: 531 LLHMIEINEERFAKILRKWARSEI 554 L M + + R A++LR+W S Sbjct: 522 KLAMSDTD--RVAEVLRQWITSNE 543 >gi|119385376|ref|YP_916432.1| flagellar MS-ring protein [Paracoccus denitrificans PD1222] gi|119375143|gb|ABL70736.1| flagellar M-ring protein FliF [Paracoccus denitrificans PD1222] Length = 526 Score = 330 bits (846), Expect = 4e-88, Method: Composition-based stats. Identities = 132/555 (23%), Positives = 237/555 (42%), Gaps = 34/555 (6%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 A+L +L +++ ++ R +LA+ L + + P LY L+ Sbjct: 3 AVLLKLQDYWRDRSTKQR---AMLAAAFLFTFAAIAGLSWMASRPGMALLYSGLDPQQSG 59 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 + A+ ++ + + I G SI V S + R+ LA +GLPS+ SGYE+ D ++ FG Sbjct: 60 AVMAAVEKSGVPYEIR--GDSIWVAESRRDELRMTLAGEGLPSAGG-SGYEILDGMSGFG 116 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 TS M + RA EGE+ARTI ++ + AARVH+ +P +R+ A TASV + Sbjct: 117 TTSQMFDAAYWRAKEGELARTILALPNVKAARVHLAVPQGRGYRRE-AEATASVTLTTDG 175 Query: 182 -PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240 P A+A++ LV++ VP + V V+DS ++++ E + + E Sbjct: 176 TPISRNQAKALKFLVSSGVPGMTADRVAVIDSERGVISSGEDFDG---------EDREAE 226 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 ++ N+ + LAA +G N + ++ +++ + E +DP + S + A +S + Sbjct: 227 MKRNVERILAAHVGHGNAIVELHLDVVNESELLTEQRFDPQERALISQESEESADQSSNA 286 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 Q + AVT N+P D +S + + ++SN+E++ + T RL++A Sbjct: 287 Q-QGAVTAASNLPEGQDSA--GDQSRSSRSETRQRSNFEVSKITREVTRQPGATRRLTVA 343 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 V+VN TE G + + ++ L I ++V++A G + RGD IT+ S+ F Sbjct: 344 VLVNGVARTEANGEATLVPREETELQAIRELVASAVGFDEGRGDAITVKSLPFASLSQAG 403 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 + F+ L + + + L LR L A Sbjct: 404 TLASAGGFLSRLDLN-----GLIRIALVGFFALALAAFLLRPLLRSKPAGSPGQAMLDRP 458 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 PP + T P +A D + RL +++ ++ Sbjct: 459 ERPPALAGARTEGAPAPAVANVVPEIDFAPAGTDGSD---------PVGRLKELMKSRKD 509 Query: 541 RFAKILRKWARSEIE 555 +IL W + Sbjct: 510 ESLQILSGWIEKRED 524 >gi|300817286|ref|ZP_07097504.1| flagellar M-ring protein FliF [Escherichia coli MS 107-1] gi|300530262|gb|EFK51324.1| flagellar M-ring protein FliF [Escherichia coli MS 107-1] Length = 548 Score = 330 bits (845), Expect = 5e-88, Method: Composition-based stats. Identities = 130/564 (23%), Positives = 247/564 (43%), Gaps = 41/564 (7%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L Q F+ + + L+ + V + + + + Y +LY + E V++I Sbjct: 8 LTQAFPAFRLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQI 67 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L + +RI I VP + K R+ LAA+G+ + SGYEL DK G + Sbjct: 68 VTVLDGEKLTYRIDPQSGQILVPEEALSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSS 126 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINP 182 F+Q + R+LEGE+A++I S+ + +ARVH+ + + SF + +ASV++R Sbjct: 127 QFVQNVRYKRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRMHYG 186 Query: 183 SVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQA 236 + AI HLV+ ++P L V+V+D G LLT A E K I++ Sbjct: 187 AKLNMDQVNAIVHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKD 246 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 IQ + ++ L + +G N+R +V+ +L++ T + Y K+ R + Sbjct: 247 IQDKTRASVANVLDSLVGTGNYRVSVMPDLDLSTIDETQEHYGDAPKINR----EESVLD 302 Query: 297 SETSQPE-SAVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHD 350 S+T+Q N P V+ ++ + E + +Y + H Sbjct: 303 SDTNQVAMGVPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHP 362 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 + ++RL++AVV+N+ A + ++ +++ A GI+++RGD +T++ Sbjct: 363 GFAVKRLNVAVVLNQNA-------PALKNWKPEQTTQLTALLNNAAGIDAQRGDNLTLSL 415 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 ++F+ + + + D + A V L+ LL+ F+ ++RL + Sbjct: 416 LNFVPQVVPVEPVIPLWKDDSV---LAWVRLIGCGLLALLLLFFVVRPVMKRLTAVRAP- 471 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 +++P P + + MP + + + +L S+ + K L+ Sbjct: 472 --------VITPEPEAVSEPWIAMPEEEC--KNVDLPSLPGDDSLPSQSSGLEVKLEFLQ 521 Query: 531 LLHMIEINEERFAKILRKWARSEI 554 L M + + R A++LR+W S Sbjct: 522 KLAMSDTD--RVAEVLRQWITSNE 543 >gi|312879583|ref|ZP_07739383.1| flagellar M-ring protein FliF [Aminomonas paucivorans DSM 12260] gi|310782874|gb|EFQ23272.1| flagellar M-ring protein FliF [Aminomonas paucivorans DSM 12260] Length = 524 Score = 330 bits (845), Expect = 5e-88, Method: Composition-based stats. Identities = 127/571 (22%), Positives = 217/571 (38%), Gaps = 64/571 (11%) Query: 1 MAILDQLLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 M + Q ++ K+ SL R + L L + + + + P Y+ L+ LEV D Sbjct: 1 MDKIRQFGEWLKAFWGSLQRWQKLSLVGASALVLCSLVLLVVWAGRPAYEPLFSGLEVED 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I L E I FR ++I +P V + R+ LA QGLP G+ELFD+ Sbjct: 61 QASIVAYLKEQKIPFRNDPAANAILLPREKVYETRLALAQQGLPKGGV-VGFELFDQ-PK 118 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 G++ F Q++ RALEGE+ARTI I + ARV+IV+P+ F + TASV++R Sbjct: 119 MGMSDFQQKVAYSRALEGELARTIGQIEAVKFARVNIVIPEQRLFLEQQQPSTASVLVRL 178 Query: 180 INPSV--YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----------ANEMERNI 226 + + I HLVA +V L+ DVTV+D+ GK+L+ + R + Sbjct: 179 KEGQEIGQEQVKGIVHLVARSVEGLNPEDVTVVDTAGKVLSDLIQDDSLIYMSGSDGRAV 238 Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS---K 283 + + + E+E + L G V +L+ D + + P Sbjct: 239 SSVQRELERQQEQELERKVRLMLEKVFGPGKAVVRVRVDLDFDKKSTSRKEFIPGPNGKG 298 Query: 284 VERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTK 343 V RS + ++++ P A N+P ++ + +N++I T+ Sbjct: 299 VVRSQQNTEESYVGPGMPPGGAPGTTTNIPGYVVNTGTGGNV--EYNRTDTVTNFDITTQ 356 Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403 + RLS +V+V+ + V+AA G N RG Sbjct: 357 ESQQVATPGAIRRLSASVLVDG-------------TLNAQQTQSLKDSVAAAIGFNQLRG 403 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 D + I M F + L+ ++G + ++ Sbjct: 404 DQLVIQGMKFDTTLADQLLAQMEAEQRQKVILALVGAALLLLIMGAGIFLWI-------- 455 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 A LMP + S +D+ H + S+ + Sbjct: 456 -------------------RRRRLAALRRLMPKEEGDQVPSLKDLLEHPELMTSQGELAI 496 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEI 554 ++ +L N E A +++ W ++ Sbjct: 497 LEE---QLRVYATNNPEEVANLIKNWLAEDL 524 >gi|113969625|ref|YP_733418.1| flagellar MS-ring protein [Shewanella sp. MR-4] gi|114046855|ref|YP_737405.1| flagellar MS-ring protein [Shewanella sp. MR-7] gi|113884309|gb|ABI38361.1| flagellar M-ring protein FliF [Shewanella sp. MR-4] gi|113888297|gb|ABI42348.1| flagellar M-ring protein FliF [Shewanella sp. MR-7] Length = 561 Score = 330 bits (845), Expect = 6e-88, Method: Composition-based stats. Identities = 108/561 (19%), Positives = 224/561 (39%), Gaps = 31/561 (5%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + S + R + + + + + L + + P Y L K+E ++ ++ Sbjct: 17 ENKSGVLGSLGGVDMMRQITMILALAICLALAVFVMIWAQEPEYRPL-GKMETQEMVQVL 75 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L + I ++I + + VP + ++ L+ G+ S++++S + + + FG++ Sbjct: 76 DVLDKNKIKYQIDVD--VVKVPEDKYQEVKMMLSRAGIDSAAASS-KDFLTQDSGFGVSQ 132 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 M++ + E +AR I+ + + A+V + +P F + A+P+A+V+I + Sbjct: 133 RMEQARLKHSQEENLARAIEQLQSVSRAKVILALPKENVFARNTAQPSATVVINTRRGGL 192 Query: 185 -YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEI 241 +AI +VA+AV L+ VTV DS G+LL + + + L +VQ + E Sbjct: 193 GQGEVDAIVDIVASAVQGLEPSRVTVTDSNGRLLNSGSQDGVSARARRELELVQQKEAEY 252 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 I+ L+ LG DNF S V ++ + ++PD RS ++ S Sbjct: 253 RTKIDSILSPILGPDNFTSQVDVSMDFTAVEQTAKRFNPDLPSLRSEMTVENN--STGGS 310 Query: 302 PESAVTVEQNMPHVSDRKV-----PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 N P + +E N+E++T T + R Sbjct: 311 TGGIPGALSNQPPMESNIPQEADKATESVTAGNSHREATRNFELDTTISHTRQQIGVVRR 370 Query: 357 LSIAVVVN-KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 +S++V V+ K G+ A + + L I +++ A G +++RGD + + ++ F++ Sbjct: 371 VSVSVAVDFKPGAAGENGQVARVARTEQELTNIRRLLEGAVGFSAQRGDVLEVVTVPFMD 430 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + + ++ R + ALV LV L V L+RL D+ E Sbjct: 431 QLVEDVPAPELWEQPWFWRAVKLGVGALVILVLILAV---VRPMLKRLIYPDNVNMPEDS 487 Query: 476 --GKSILSPPPISSAVTTGLM--PNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 G + +A T G++ + + + I + + Sbjct: 488 RLGNELAEIEDQYAADTLGMLNTKEAEYSYADDGSILIPNLHKDDDMIKA---------I 538 Query: 532 LHMIEINEERFAKILRKWARS 552 ++ E ++++ W + Sbjct: 539 RALVANEPELSTQVVKNWLQD 559 >gi|301646796|ref|ZP_07246650.1| flagellar M-ring protein FliF [Escherichia coli MS 146-1] gi|307136844|ref|ZP_07496200.1| flagellar MS-ring protein [Escherichia coli H736] gi|331640699|ref|ZP_08341846.1| flagellar M-ring protein FliF [Escherichia coli H736] gi|301075031|gb|EFK89837.1| flagellar M-ring protein FliF [Escherichia coli MS 146-1] gi|315616841|gb|EFU97458.1| flagellar M-ring protein FliF [Escherichia coli 3431] gi|331040073|gb|EGI12281.1| flagellar M-ring protein FliF [Escherichia coli H736] Length = 548 Score = 330 bits (845), Expect = 6e-88, Method: Composition-based stats. Identities = 130/564 (23%), Positives = 246/564 (43%), Gaps = 41/564 (7%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L Q F+ + L+ + V + + + + Y +LY + E V++I Sbjct: 8 LTQAFPAFRLRLVDNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQI 67 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L + +RI I VP + K R+ LAA+G+ + SGYEL DK G + Sbjct: 68 VTVLDGEKLSYRIDPQSGQILVPEDELSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSS 126 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINP 182 F+Q + R+LEGE+A++I S+ + +ARVH+ + + SF + +ASV++R Sbjct: 127 QFVQNVRYKRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYG 186 Query: 183 SVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQA 236 + AI HLV+ ++P L V+V+D G LLT A E K I++ Sbjct: 187 AKLNMDQVNAIVHLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKD 246 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 IQ + ++ L + +G N+R +V+ +L++ T + Y K+ R + Sbjct: 247 IQDKTRASVANVLDSLVGSGNYRVSVMPDLDLSTIDETQEHYGDAPKINR----EESVLD 302 Query: 297 SETSQPE-SAVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHD 350 S+T+Q N P V+ ++ + E + +Y + H Sbjct: 303 SDTNQVAMGVPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHP 362 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 + ++RL++AVV+N+ A + ++ +++ A GI+++RGD +T++ Sbjct: 363 GFAVKRLNVAVVLNQNA-------PALKNWKPEQTTQLTALLNNAAGIDAQRGDNLTLSL 415 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 ++F+ + + + D + A V L+ LL+ F+ ++RL + Sbjct: 416 LNFVPQVVPVEPVIPLWKDDSV---LAWVRLIGCGLLALLLLFFVVRPVMKRLTAVRAP- 471 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 +++P P + + MP + + + +L S+ + K L+ Sbjct: 472 --------VITPEPEAVSEPWIAMPEEE--RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQ 521 Query: 531 LLHMIEINEERFAKILRKWARSEI 554 L M + + R A++LR+W S Sbjct: 522 KLAMSDTD--RVAEVLRQWITSNE 543 >gi|126734120|ref|ZP_01749867.1| flagellar M-ring protein FliF, putative [Roseobacter sp. CCS2] gi|126716986|gb|EBA13850.1| flagellar M-ring protein FliF, putative [Roseobacter sp. CCS2] Length = 526 Score = 330 bits (845), Expect = 6e-88, Method: Composition-based stats. Identities = 135/544 (24%), Positives = 226/544 (41%), Gaps = 27/544 (4%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 K ++L R +IL V V M + + L+ LE + AL Sbjct: 3 NLGKVWSALSIQRRIILIVVTGVVFMAVLLLARGAGTKDMSLLFGGLEPRAAGDVVTALD 62 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 + + + + G++I VP+ R+ LA QGLP++ S GYEL D ++ F T+ M + Sbjct: 63 QQGVAYEVR--GNAIYVPTVQRDGLRMALAGQGLPATGSQ-GYELLDSLSGFSTTAQMFD 119 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA 188 RA EGE+ARTI + I AARVHI P F+ ++ A + A + Sbjct: 120 AAYWRAKEGELARTIVASPHIRAARVHISTPSQRPFQAAQSQTAAVTVTMAGTTLSTQHL 179 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKA 248 +A++ L+ AAVP L DV V+D G LL+ + + + + Sbjct: 180 KALQFLIGAAVPGLSPADVAVIDDEGGLLSEADTNSAGMNGD-----NHAENLRKRAERL 234 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308 LAA +GV N V + ++T+ I E DPDS++ S +++ + S S+ VTV Sbjct: 235 LAARVGVGNAVVEVSVDQVLETEMITERRVDPDSRIAISTDVTESSGNSTDSR-GGDVTV 293 Query: 309 EQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368 N+P S EN++ + +NYE++ T + RL++AV+VN Sbjct: 294 ASNLPDGDAGARSGSASNENSESR-TLTNYEVSQTERQLTKAPGAIRRLTVAVLVNDLVD 352 Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSF 428 T G + + + LA + +V++A G++ RGD +T+ SM F + + + Sbjct: 353 TAADGTTTTTPRTEGELAALEDLVASAVGLDVDRGDVLTLRSMPFEPFEPVGTAATGPA- 411 Query: 429 MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSA 488 + ++ + V + LGL +R + A ++ + P IS Sbjct: 412 ----ASLPLDMMQLIQIGVLAAVALILGLFVVRPILASSGASAAQLSIEEQAEPIDISP- 466 Query: 489 VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRK 548 M D+ AL + RL +I E ++L+ Sbjct: 467 --PMAMAMDDNALGDFIDNGLLGMDADDD---------PVARLKRIIADREPETLQVLQN 515 Query: 549 WARS 552 W Sbjct: 516 WIEE 519 >gi|167037669|ref|YP_001665247.1| flagellar M-ring protein FliF [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116084|ref|YP_004186243.1| flagellar M-ring protein FliF [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856503|gb|ABY94911.1| flagellar M-ring protein FliF [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929175|gb|ADV79860.1| flagellar M-ring protein FliF [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 503 Score = 329 bits (844), Expect = 7e-88, Method: Composition-based stats. Identities = 122/567 (21%), Positives = 222/567 (39%), Gaps = 85/567 (14%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 +QL F+ + ++ I+A ++ + I L + + VN P+Y LY L + D Sbjct: 7 NFREQLTNFWNKFDKKQKIQLGIIAILLFIGISLLV---YIVNRPNYVVLYSDLSIKDAG 63 Query: 62 RISVALSEA-NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK-VNS 119 + L I ++IS++G++I VP+ + R+ LA +G+P G+ D NS Sbjct: 64 AVVEKLKTEFKIPYKISNDGTTILVPAQYKDEVRMKLATEGIPQG----GFSFQDAMNNS 119 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARPTASVMI 177 T + + L+ EI ++++I G+ A V+IV+PD +F + TA+VM+ Sbjct: 120 LATTDQERRQKYLYFLQNEIQNSLKTIDGVQDAIVNIVVPDQNAFVLSNTTNQATAAVML 179 Query: 178 RAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIV 234 + I V+ +V L +VTV+D+ GK+LTA ++ ++ Sbjct: 180 TLKPGVTLSSSQVKGIIDFVSKSVEGLKPENVTVIDNNGKILTAESDTTAENANTQFALQ 239 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIR 289 + +Q +++ ++ L G N LN D + I Y P + + RSI+ Sbjct: 240 KKVQEDLQNSLQTLLEQVFGPGNVVVRANVTLNFDKKTQDTIEYLPVQGNDNKGIVRSIQ 299 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 K+ ++ +Q S N P V + ++ E NYEIN + Sbjct: 300 ELKE--KATGTQGGSPAGTATNNPPVIST---TGNGTSDYNRTEITINYEINQIKTSLVQ 354 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD---TI 406 K+E +SIAVV+N Q +S +I +V+ A G GD + Sbjct: 355 AQGKIENISIAVVIN-------------QNLNNSMKQQIADLVTKAAG-----GDSLVQV 396 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 ++ M F ++ L + Q + + ++ ALV G L+ +RR Sbjct: 397 SVQGMQFNQD-LLKTMQQQAKASKGVPVYVWAILAALVLGGGLFLI------MMRRKKKE 449 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 E + + P I+ + Sbjct: 450 TSLTTAEQEVLATVEPTYE---------------------------------IDFSDKDE 476 Query: 527 SDLRLLHMIEINEERFAKILRKWARSE 553 ++ +I+ + +I+R W E Sbjct: 477 KKKQIEKLIKEKPDIVVQIIRTWLNEE 503 >gi|288573030|ref|ZP_06391387.1| flagellar M-ring protein FliF [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568771|gb|EFC90328.1| flagellar M-ring protein FliF [Dethiosulfovibrio peptidovorans DSM 11002] Length = 497 Score = 329 bits (844), Expect = 7e-88, Method: Composition-based stats. Identities = 126/543 (23%), Positives = 225/543 (41%), Gaps = 61/543 (11%) Query: 26 ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISV 85 ++ + +A ++ L+ LE+ D I L E I +R+ ++I + Sbjct: 1 MGIVSLVFFGLIALVVLSGRESWEPLFSGLEIQDEASIVAYLKENKIPYRLDPGANAILL 60 Query: 86 PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145 P V + R+ LA GLP GYE+FD V G++ F Q+IT VRALEGE+ART+ Sbjct: 61 PEEHVYEVRLELARAGLPKGGVK-GYEIFDDVQ-MGMSEFQQKITYVRALEGELARTVAQ 118 Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV--YKSAEAIRHLVAAAVPNLD 203 I + A+++IV+P F + TASV++R + + +AI HLV+ +V L Sbjct: 119 IDSVEYAKINIVIPQPHLFLEQQQPATASVLVRIHQGASINPEQIKAIVHLVSHSVEGLQ 178 Query: 204 MGDVTVLDSTGKLLT----------ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFL 253 DVTV+D+ G +L+ ++ R + + + + E+E + L Sbjct: 179 PDDVTVVDTDGNVLSDLIEDDMFIYSDGAGRTVSSVQRELERQQEKEMERKVRAMLERVF 238 Query: 254 GVDNFRSAVVAELNMDTQQIREIVYDPDSK---VERSIRLSKDAQRSETSQPESAVTVEQ 310 G + + +L++D ++ Y P V RS + ++++ A Sbjct: 239 GPGSVVVRIKVDLDLDKKRNASTQYIPGPTGKGVVRSEQNTEESYVGPGGPTGGAPGTTT 298 Query: 311 NMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTE 370 N+P + + +K + +NYEI T + RL+ +V+V+ Sbjct: 299 NIPGYA--IDTGAGGVGEYNKTDTVTNYEITTHESENVETPGSIRRLTASVLVDGD---- 352 Query: 371 VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMD 430 + L +I +V+ A G++S RGD I I SM F + + Sbjct: 353 ---------LSEEQLEDIRALVAPAIGLDSGRGDQIAIQSMKFSTTLADRMAEQLAA--E 401 Query: 431 ILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVT 490 + A V + L+ L F+ RR ++D A++ E G+ Sbjct: 402 RRQKIVAAVTLLGILLILLALALFMWYRRRRRRKSLDAARRAEDAGQVP----------- 450 Query: 491 TGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 S QD+ S ++++ V ++ ++ + N E FA +R+W Sbjct: 451 -------------SLQDLLSSPGAMEAQGELAVLEE---QIRNYALNNPEEFAAFIREWI 494 Query: 551 RSE 553 + Sbjct: 495 VED 497 >gi|28899023|ref|NP_798628.1| flagellar MS-ring protein [Vibrio parahaemolyticus RIMD 2210633] gi|153836977|ref|ZP_01989644.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AQ3810] gi|260365231|ref|ZP_05777788.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus K5030] gi|260878781|ref|ZP_05891136.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AN-5034] gi|260897376|ref|ZP_05905872.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus Peru-466] gi|260899935|ref|ZP_05908330.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AQ4037] gi|4322017|gb|AAD15920.1| polar flagellar M-ring protein FliF [Vibrio parahaemolyticus] gi|28807242|dbj|BAC60512.1| polar flagellar M-ring protein FliF [Vibrio parahaemolyticus RIMD 2210633] gi|149749750|gb|EDM60495.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AQ3810] gi|308088295|gb|EFO37990.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus Peru-466] gi|308094213|gb|EFO43908.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AN-5034] gi|308107383|gb|EFO44923.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AQ4037] gi|308115404|gb|EFO52944.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus K5030] gi|328474440|gb|EGF45245.1| flagellar MS-ring protein [Vibrio parahaemolyticus 10329] Length = 580 Score = 329 bits (843), Expect = 1e-87, Method: Composition-based stats. Identities = 104/554 (18%), Positives = 237/554 (42%), Gaps = 36/554 (6%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 L R +L+L+ I V +++ + F+V P L + ++ + L + I Sbjct: 47 GDLDLLRQVVLVLSISICVALIVMLF--FWVKEPEMRPLGA-YDTEELIPVLDYLDQQKI 103 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 ++++ +G+++SV SS ++ + G+ + ++ +G ++ + FG++ +++ Sbjct: 104 NYKL--DGNTVSVESSEYNSIKLGMVRSGV-NQATEAGDDILLQDMGFGVSQRLEQERLK 160 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEA 190 + E ++A+ I+ + + ARV + +P F + +ASV + + K ++ Sbjct: 161 LSRERQLAQAIEEMKQVRKARVLLALPKHSVFVRHNQEASASVFLTLSTGANLKQQEVDS 220 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKA 248 I +VA+AVP + +TV D G+LL++ + K + ++ + + I+ Sbjct: 221 IVDMVASAVPGMKTSRITVTDQHGRLLSSGSQDPASAARRKEQELERSQEQALREKIDSV 280 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------T 299 L LG N+ + V +++ + +DP++ RS +D + Sbjct: 281 LLPILGFGNYTAQVDIQMDFSAVEQTRKRFDPNTPSTRSEYALEDYNNGNMVAGIPGALS 340 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 +QP + ++ Q++ + D V S+ +KE N+E++T + R ++ Sbjct: 341 NQPPADASIPQDVAQMKDGSVMGQGSV----RKESTRNFELDTTISHERKQTGTVARQTV 396 Query: 360 AVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 +V + ++ ++ G + + I +++ G + RGD + + S+ F E + Sbjct: 397 SVAIKDRRQVNPDTGEVTYTPMSEGEINAIRQVLIGTVGFDQSRGDLLNVLSVKFAEPET 456 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 + + +ALV +V L++ A+++L N E+ G Sbjct: 457 EQLVDQPIWEHPNFNDWVRWFASALVIIVVVLVLV---RPAMKKLLNPAGDDDDEMYGPD 513 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 L PI + T L+ +D ++SS F S +L N + + + ++ Sbjct: 514 GL---PIGADGETSLIGSD---IESSELFEFGSSIDLP---NLHKDEDVLKAVRALVANE 564 Query: 539 EERFAKILRKWARS 552 E A++++ W Sbjct: 565 PELAAQVVKNWMNE 578 >gi|289523574|ref|ZP_06440428.1| flagellar M-ring protein FliF [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503266|gb|EFD24430.1| flagellar M-ring protein FliF [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 490 Score = 328 bits (842), Expect = 1e-87, Method: Composition-based stats. Identities = 127/528 (24%), Positives = 211/528 (39%), Gaps = 71/528 (13%) Query: 45 SPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPS 104 Y+ L+ L+V D I L E+NI +R+ + ++I VP +V + R+ L +GLP Sbjct: 20 RERYEPLFSNLDVEDQAAIVNYLKESNIPYRVDPSFNAILVPRDVVYETRLSLVGEGLPR 79 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + G+ELFDK G+T F Q++ +RALEGE+ RTIQSI G+ + +V+IV+P+ F Sbjct: 80 GGA-VGFELFDK-MKMGMTDFQQKVGYLRALEGELTRTIQSIRGVQSCKVNIVIPEQKLF 137 Query: 165 RKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM 222 + TASV++ + +AI HLV+ +V L +V V+DS G +L+ Sbjct: 138 LEEQFPATASVLLSLKPGFEMGPEQVKAIVHLVSHSVEGLSPDNVVVVDSKGAILSDMLD 197 Query: 223 ER-------NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 E + + + + E+E + L G V LN D ++ Sbjct: 198 ESYFVLRNETVTSVQREMERQQELELERKARQMLERIFGPGKAVVRVRVFLNFDRRRTST 257 Query: 276 IVYDPDS---KVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332 + P V RS + ++ P A N+P P + ++ Sbjct: 258 REFVPGPSGRGVPRSDQSLEETYTGPGIPPGGAPGTTTNIPGYV--ITPQTAGPSSYERT 315 Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV 392 E +NYEI T+ + +E+++ +V+V+ L + + V Sbjct: 316 ETTTNYEITTREQEVVYTPGGVEKITASVLVDGQ-------------LEQQMLNSLRQAV 362 Query: 393 SAATGINSRRGDTITITSMDF--LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL 450 +AA GIN RGD + + SM F +E + IL+ A +I V Sbjct: 363 AAAIGINEERGDELYVASMPFSAMEVPAVALAPSRRWLWIILAVLLALLICGGVIFF--- 419 Query: 451 LVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFS 510 L +K E P S +++ Sbjct: 420 ------------LRKKRKEEKPETAPAREEEGIP-------------------SLEELLK 448 Query: 511 HSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIEDRY 558 L+ + V +Q +L E A I++ W +ED+Y Sbjct: 449 RPELLKEKGELAVLEQ---QLREYASKKPEEIAAIIKNWL---LEDQY 490 >gi|149908457|ref|ZP_01897120.1| flagellar biosynthesis; basal-body MS(membrane andsupramembrane)-ring and collar protein [Moritella sp. PE36] gi|149808620|gb|EDM68555.1| flagellar biosynthesis; basal-body MS(membrane andsupramembrane)-ring and collar protein [Moritella sp. PE36] Length = 569 Score = 328 bits (842), Expect = 1e-87, Method: Composition-based stats. Identities = 101/560 (18%), Positives = 217/560 (38%), Gaps = 29/560 (5%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 +Q F T+ R +IL + + + L + + P L +++ Sbjct: 27 EQKSSAFGFFTNADILRQIILILALAISLTLVVFILLWGKEPEMRPLGT-YPTAELIETL 85 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L + ID+ I NG ++SV + ++ L GL +++ G ++ + FG++ Sbjct: 86 DFLDQEKIDYTI--NGDTVSVSAEQYQNIKLRLRRSGL-TTTELQGDDILMQDMGFGVSQ 142 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 ++ E +IAR ++ + A+V + +P F K +P+A+V++ N + Sbjct: 143 RVERERLKLGRERQIARALEEFKQVSKAQVLLAIPKENVFAKRNKKPSATVVLTVRNSAA 202 Query: 185 YKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHE 240 +++ LVA+AV L+ VT+ D G+LL + + + +V+ + E Sbjct: 203 LSQENIDSMVQLVASAVQGLEPTRVTLTDQNGRLLNSGSQDMLAAKGRREFEMVKNHERE 262 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I+ L LGV N+ + V ++ + + ++PD RS L + ++S + Sbjct: 263 YRTKIDSILMPILGVSNYTAEVDVSMDFSVTEQTQKRFNPDLPAVRSEMLLE--RQSFGN 320 Query: 301 QPESAVTVEQNMPHVSDR------KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 + N P + +KE NYE++T T + Sbjct: 321 GNQGIPGALTNQPPLDADIPEEADAGNAAAGPIGQSQKESTRNYELDTTISHTKSQTGVI 380 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 +RLS++V ++ G + + + +A I +++ G N RGD + + ++ F Sbjct: 381 QRLSVSVAIDYINSVGADGALVREPRSQAEIANIRRVLQGGIGFNVNRGDNLEVVAIPFN 440 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 +L + + + R + A LV +L+ + ++RL N + + E Sbjct: 441 RPELTAMTDLPIWEEEWFWR---AIRIAASLLVIVVLIIAIIRPMIKRLINNEPEENLED 497 Query: 475 GGKSILSPPPISS-AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 I + + T D S + + + + + Sbjct: 498 LDLGISAIENDEDMQLLTADTEGDTDFAMRSGHLQLPNLHKDEDLLEA---------VRA 548 Query: 534 MIEINEERFAKILRKWARSE 553 ++ + A ++++W + Sbjct: 549 LVANEPDLTALVIKEWMIED 568 >gi|256750740|ref|ZP_05491625.1| flagellar M-ring protein FliF [Thermoanaerobacter ethanolicus CCSD1] gi|256750323|gb|EEU63342.1| flagellar M-ring protein FliF [Thermoanaerobacter ethanolicus CCSD1] Length = 503 Score = 328 bits (842), Expect = 1e-87, Method: Composition-based stats. Identities = 123/567 (21%), Positives = 218/567 (38%), Gaps = 85/567 (14%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 +QL F+ + ++ I+A ++ + I L + + VN P+Y LY L + D Sbjct: 7 NFREQLTDFWNKFDKKQKIQLGIIAILLFIGISLLV---YLVNRPNYVVLYSDLSIKDAG 63 Query: 62 RISVALSEA-NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK-VNS 119 + L I ++IS++G++I VP + R+ LA +G+P G+ D NS Sbjct: 64 AVVEKLKTEFKIPYKISNDGTTILVPVQYKDEVRMKLATEGIPQG----GFSFQDAMNNS 119 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARPTASVMI 177 T + + L+ EI ++++I G+ A V+I +PD +F + TA+VM+ Sbjct: 120 LATTDQERRQKHLYFLQNEIQNSLKTIDGVQDAIVNIAVPDQNAFVLSNTTNQATAAVML 179 Query: 178 RAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIV 234 + I V+ +V L +VTV+D+ GK+LTA ++ Sbjct: 180 TLKPGVTLSSSQVKGIIDFVSKSVEGLKPENVTVIDNNGKILTAESDSTAENANTQFTLQ 239 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIR 289 + +Q +++ +I L G N LN D + I Y P + + RSI+ Sbjct: 240 KKVQEDLQNSIQTLLEQVFGPGNVVVRANVTLNFDKKTQDTIEYLPVQGNDNKGIVRSIQ 299 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 K+ ++ +Q S N P V + ++ E NYEIN + Sbjct: 300 ELKE--KATGTQGGSPAGTATNNPPVIST---TGNGTSDYNRTEITINYEINQIKTSLVQ 354 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD---TI 406 K+E +SIAVVVN Q +S +I +V+ A G GD + Sbjct: 355 AQGKIENISIAVVVN-------------QNLNNSMKQQIADLVTKAAG-----GDSLVQV 396 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 ++ M F ++ L + Q + + ++ ALV G L+ +RR Sbjct: 397 SVQGMQFNQD-LLKTMQQQAKASKGVPVYVWAILAALVLGGGLFLI------MMRRKKKE 449 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 E + + P I+ + Sbjct: 450 TSLTTAEQEVLATVEPTYE---------------------------------IDFSDKDE 476 Query: 527 SDLRLLHMIEINEERFAKILRKWARSE 553 ++ +I+ + +I+R W E Sbjct: 477 KKKQIEKLIKEKPDIVVQIIRTWLNEE 503 >gi|254478876|ref|ZP_05092240.1| flagellar M-ring protein FliF [Carboxydibrachium pacificum DSM 12653] gi|214035189|gb|EEB75899.1| flagellar M-ring protein FliF [Carboxydibrachium pacificum DSM 12653] Length = 506 Score = 328 bits (842), Expect = 1e-87, Method: Composition-based stats. Identities = 119/564 (21%), Positives = 220/564 (39%), Gaps = 76/564 (13%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 +QLL F+ + ++ ++A ++ + I L + + N P+Y LY L + D Sbjct: 7 NFREQLLNFWNKFDKKQKIQLTVIAILVFISISLLV---YIANRPNYVVLYSNLSLKDAG 63 Query: 62 RISVALSEA-NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK-VNS 119 + L + +++SDNG++I VP+ + R+ LA +G+P G+ D NS Sbjct: 64 IVVEKLKSEFKVPYKLSDNGTTILVPAQYKDEIRMKLATEGIPQG----GFSFQDAMNNS 119 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARPTASVMI 177 T + + ++ EI ++++I G+ A V+IV+PD +F + TA+VM+ Sbjct: 120 LSTTDQERRQKYLYFVQNEIQNSLKTIEGVQDAVVNIVVPDQNAFVLSNTTNQATAAVML 179 Query: 178 RAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIV 234 + + I V+ +V L +VTV+DSTGK+LT ++ Sbjct: 180 TLKPGATLTPSQVKGIIDFVSKSVEGLKPENVTVIDSTGKILTPESDSIAENASNQFALQ 239 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIR 289 + +Q +++ ++ L G N LN D + I Y P + + RS++ Sbjct: 240 KKVQEDLQNSLQTLLEQVFGPGNVVVRANVRLNFDKKTEDRIEYTPVQGNDNKGIVRSVQ 299 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 K+ ++ +Q S P + + DK E NYEIN Sbjct: 300 ELKE--KATGTQNGSPTGTASTTPPGGGALSTQSNNTSSYDKTETTINYEINQIKTTLVE 357 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 K+E +S+AVVVNK S +I +V+ A G N+ +++ Sbjct: 358 AQGKIESISVAVVVNK-------------PLNASMQQQIADLVANAAGGNNV---KVSVQ 401 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 + F ++ L + Q + + +I AL VG LV FL + + I A Sbjct: 402 GIPFNQD-LLKAMQAQKKVAQGMPLYLWGIIAALA--VGGGLVAFLMIRRRKTKEVIPPA 458 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 ++ + + I+ + Sbjct: 459 EEEVLATAEPVEEIVIT------------------------------------EKDEKKK 482 Query: 530 RLLHMIEINEERFAKILRKWARSE 553 ++ +I + +++R W E Sbjct: 483 QIEKLIREKPDIVVQLIRTWLNEE 506 >gi|15895431|ref|NP_348780.1| flagellar MS-ring protein [Clostridium acetobutylicum ATCC 824] gi|15025155|gb|AAK80120.1|AE007716_9 Flagellar basal body M-ring protein FliF [Clostridium acetobutylicum ATCC 824] gi|325509577|gb|ADZ21213.1| flagellar MS-ring protein [Clostridium acetobutylicum EA 2018] Length = 544 Score = 328 bits (841), Expect = 1e-87, Method: Composition-based stats. Identities = 111/579 (19%), Positives = 213/579 (36%), Gaps = 64/579 (11%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 +L+ L + + + ++ +++ I + Y L+ KL+ SD Sbjct: 3 KLLESLKNLRNKWGEISKRKKIVFLIIVVAIIASLVVFLVSTTRTKYAVLFSKLDSSDAA 62 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV-NSF 120 + L I + + ++I VP++ V K R+ A ++G+ELFD N F Sbjct: 63 TVISKLDSDKIAHKEDSSTNTIYVPAADVDKLRLQYATN---LKGGSTGFELFDNSANKF 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 G T + RAL+GE+ RTI++ I ARVH+VM + +F K +ASV ++ Sbjct: 120 GTTDSEFNVEYQRALQGELERTIKNFDEISDARVHLVMSEDSAFVKDSTPASASVTVKMK 179 Query: 181 NPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN----------EMERNILG 228 +AI LV+ +V NL +V V+D LL+ + + Sbjct: 180 AGETLSKDQVKAIISLVSGSVKNLPKENVQVVDDKMALLSKDLYNSKGKDDSSDTTDSAE 239 Query: 229 KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY--------DP 280 + ++ E+E +L + G + + A+LN D Q+ Y DP Sbjct: 240 NRNKMESNVESELEKKALDSLESIYGKGKVKVKINADLNFDAQETNSQTYYDNKGNPNDP 299 Query: 281 DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEI 340 + S + S S + N + S + K+ +NY++ Sbjct: 300 KNPTIVSQHSQESTNSQPQSTSSSPLDNNTN-----SNTIANNNSNSTSSSKDVTTNYDV 354 Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400 ++++ T + RL+I+V+V+ + + +VS A G N Sbjct: 355 SSETNKTVKAPGDVRRLTISVIVDGKINGDTQST-------------LTNVVSNAVGYNQ 401 Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMD---ILSRHFATVINALVFLVGTLLVTFLGL 457 +RGDTI++ + F + D ++ + A+ V L + + Sbjct: 402 QRGDTISVEGLPFDNTAETEAKKALKEMQDAQNAANKQKMYMAIAIGAGVLALAIITFVV 461 Query: 458 HALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS 517 +RR D ++ + S N+ + ++ S ++ Sbjct: 462 IMIRRRKQAADEEEFDEDLDS-----------------TQNLDVVVGDEIKKSKTKFAPI 504 Query: 518 RINSYVSKQSD--LRLLHMIEINEERFAKILRKWARSEI 554 +Q+ + E+ I++ W +E Sbjct: 505 DFEGEEDEQTHIEKEIKKYASTKPEQVVDIVKAWLTNEE 543 >gi|51597648|ref|YP_071839.1| flagellar MS-ring protein [Yersinia pseudotuberculosis IP 32953] gi|51590930|emb|CAH22586.1| putative flagellar M-ring protein [Yersinia pseudotuberculosis IP 32953] Length = 546 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 127/560 (22%), Positives = 247/560 (44%), Gaps = 29/560 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +LD++ Q F G LG +IL S + + + + +S Y L+ E + + Sbjct: 1 MLDKIKQKFSPG-QLGENTKIILMSAAALLVTAAIIFSLWRSSQGYTALFGSQENIPITQ 59 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + L I +RI+ + + V + +GKARI LAA+G+ +++ GYEL DK + G Sbjct: 60 VVEVLEGEAIAYRINPDNGQVLVAENQLGKARILLAAKGI-TATLPIGYELMDKESMLGS 118 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRAIN 181 + F+Q + R+LEGE+A+++ ++S + ARVH+ M + SF A +ASV++R Sbjct: 119 SQFIQNVRYKRSLEGELAQSMMALSAVEYARVHLGMSEASSFAISNHADNSASVVLRLRY 178 Query: 182 PSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQ 235 + AI LVA ++P + +V V+D G+LL+ AN + + Sbjct: 179 GQTLSTEQVGAIVQLVAGSIPGMKPANVRVVDQHGELLSQAYQANSEGVPSVKSGTELAH 238 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 +Q E NI L + +G +N+R +V +L+M + Y PD R++ + Sbjct: 239 YLQSTTEKNIANLLNSVIGANNYRISVSTQLDMSRIEETAEHYGPDP------RINDENI 292 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 + E S + A+ + ++ + + ++ + + Q Y + + YKLE Sbjct: 293 QQENSNDDMAMGIPGSLSNQPIPQSQAGQTPAAVSRSQAQRKYIYDRNIRHVRYPGYKLE 352 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 ++++AVV+NK + E+ +++ A GI+ +RGD++TI M F Sbjct: 353 KMTVAVVLNKS-------LPVLEQWTPEQQEELKRLIEDAAGIDVKRGDSLTINMMAFAV 405 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 L + + R + L+ L+ L L + ++ ++ + Sbjct: 406 PTLIDEPVMPWWQEPSTFRWAELLGIGLLSLLVLLFGV----RPLMKRYSRKGSENLPLA 461 Query: 476 GKSILSPPPISSAVTTGLMPNDNI-ALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 S + + T + ++ + S +L + + +K + L + Sbjct: 462 ISSASADEALDHVDTGVDGAESSPRTENAFSASSLWKSDDLPEQGSGLETKIAH--LQQL 519 Query: 535 IEINEERFAKILRKWARSEI 554 + ER A+++++W S Sbjct: 520 AQSETERTAEVIKQWINSNE 539 >gi|20807889|ref|NP_623060.1| flagellar biosynthesis/type III secretory pathway lipoprotein [Thermoanaerobacter tengcongensis MB4] gi|20516454|gb|AAM24664.1| Flagellar biosynthesis/type III secretory pathway lipoprotein [Thermoanaerobacter tengcongensis MB4] Length = 503 Score = 328 bits (840), Expect = 2e-87, Method: Composition-based stats. Identities = 121/564 (21%), Positives = 225/564 (39%), Gaps = 79/564 (14%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 +QLL F+ + ++ ++A ++ + I L + + N P+Y LY L + D Sbjct: 7 NFREQLLNFWNKFDKKQKIQLTVIAILVFISISLLV---YIANRPNYVVLYSNLSLKDAG 63 Query: 62 RISVALSEA-NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK-VNS 119 + L + +++SDNG++I VP+ + R+ LA +G+P G+ D NS Sbjct: 64 IVVEKLKSDFKVPYKLSDNGTTILVPAQYKDEIRMKLATEGIPQG----GFSFQDAMNNS 119 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARPTASVMI 177 T + + ++ EI ++++I G+ A V+IV+PD +F + TA+VM+ Sbjct: 120 LSTTDQERRQKYLYFVQNEIQNSLKTIEGVQDAIVNIVVPDQNAFVLSNTTNQATAAVML 179 Query: 178 RAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIV 234 + + I V+ +V L +VTV+DSTGK+LT ++ Sbjct: 180 TLKPGATLTPSQVKGIIDFVSKSVEGLKPENVTVIDSTGKILTPESDSIAENASNQFALQ 239 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIR 289 + +Q +++ ++ L G N LN D + I Y P + + RS++ Sbjct: 240 KKVQEDLQNSLQTLLEQVFGPGNVVVRANVRLNFDKKTEDRIEYTPVQGNDNKGIVRSVQ 299 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 K+ ++ +Q S N P V +++ + + DK E NYEIN Sbjct: 300 ELKE--KATGTQSGSPPGQPTNNPPVYNQQ---NNNTSSYDKTETTINYEINQIKTTLVE 354 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 K+E +S+AVVVNK S +I +V+ A G N+ +++ Sbjct: 355 AQGKIESISVAVVVNK-------------PLNASMQQQIADLVANAAGGNNV---KVSVQ 398 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 + F ++ L + Q + + +I AL VG LV FL + + I A Sbjct: 399 GIPFNQD-LLKAMQAQKKVAQGMPIYLWGIIAALA--VGGGLVAFLMIRRRKTKEVIPPA 455 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 ++ + + I+ + Sbjct: 456 EEEVLATAEPVEEIVIT------------------------------------EKDEKKK 479 Query: 530 RLLHMIEINEERFAKILRKWARSE 553 ++ +I + +++R W E Sbjct: 480 QIEKLIREKPDIVVQLIRTWLNEE 503 >gi|304414645|ref|ZP_07395721.1| flagellar MS-ring protein [Candidatus Regiella insecticola LSR1] gi|304283183|gb|EFL91591.1| flagellar MS-ring protein [Candidatus Regiella insecticola LSR1] Length = 532 Score = 327 bits (839), Expect = 2e-87, Method: Composition-based stats. Identities = 116/552 (21%), Positives = 232/552 (42%), Gaps = 38/552 (6%) Query: 26 ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISV 85 + I + + +S Y L+ E ++ L +I +R++ + I V Sbjct: 1 MGIAAAMISGAIIFSLWRSSQSYTVLFGSQEQIPTTQVVEVLGSESIPYRVNPDNGQILV 60 Query: 86 PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145 + +G+AR+ LAA+G+ +++ GYEL DK G + FMQ + R+LEGE+A+++ + Sbjct: 61 AENQLGRARMALAAKGI-TAALPVGYELMDKETMLGSSQFMQNVRYKRSLEGELAQSVMA 119 Query: 146 ISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAIN--PSVYKSAEAIRHLVAAAVPNL 202 + + ARV + M + SF +ASV++R + AI LV+ +VP + Sbjct: 120 LDAVEYARVRLGMSEASSFVITTKPDSSASVILRLKPRHQLTPEQVGAIIQLVSGSVPGM 179 Query: 203 DMGDVTVLDSTGKLLTANEMERNILGKSL----SIVQAIQHEIEMNINKALAAFLGVDNF 258 V V++ G+LL+ N +L + + +Q +E N+ L +G +N+ Sbjct: 180 KASQVRVINQNGELLSEGYQNSNNGLSTLKSGPELARKLQLAVEKNVANLLNPIVGANNY 239 Query: 259 RSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDR 318 R +V +L++ + + Y D R + E+S E A+ + + + Sbjct: 240 RISVTTQLDLSNIEEKLERYGADP------RTLDENVNQESSSDERAMGIPVTLSNQPAA 293 Query: 319 KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ 378 K ++ + Q + + H +YKLE++++A+V+NK SA + Sbjct: 294 KNNAQSPSTMLNRSQSQRKFAYDRDIRHVRHPSYKLEKMTVAIVLNK-------AASALE 346 Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFAT 438 L E+ ++ A GIN RGD++T+ + F + + R Sbjct: 347 QWTTPQLDELKRLAIDAAGINFDRGDSLTMNLITFTPQTEYEETPLPWWQEPAALRW--- 403 Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE--VGGKSILSPPPISSAVTTGLMP- 495 + + G+ L + ++ + P ++A P Sbjct: 404 -AQMGGIGLIAFFFLWFGVRPLIQRVTREEQTSSTSVASPDQPQNLTPETTAAMGDAAPK 462 Query: 496 --NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA--- 550 ++ + D + F +L S + +K S +++L E + R A+++++W Sbjct: 463 INDEKVLADVLPKSSFQEEDDLPSPASGLETKISHMQMLAYSETD--RVAEVIKQWINSN 520 Query: 551 ---RSEIEDRYT 559 R+E++ R + Sbjct: 521 ERTRAELDTRES 532 >gi|289578434|ref|YP_003477061.1| flagellar M-ring protein FliF [Thermoanaerobacter italicus Ab9] gi|289528147|gb|ADD02499.1| flagellar M-ring protein FliF [Thermoanaerobacter italicus Ab9] Length = 503 Score = 327 bits (838), Expect = 3e-87, Method: Composition-based stats. Identities = 119/567 (20%), Positives = 220/567 (38%), Gaps = 85/567 (14%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 +QL F+ + ++ ++A ++ + + L + + VN P+Y LY L + D Sbjct: 7 NFREQLTNFWNKFDKKQKMQLGVIAILLFIGVSLLV---YIVNRPNYVVLYSDLSIKDAG 63 Query: 62 RISVALSEA-NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK-VNS 119 + L + ++IS++G +I VP+ + R+ LA +G+P G+ D NS Sbjct: 64 VVVEKLKTEFKVPYKISNDGKTILVPAQYKDEVRMKLATEGIP----EGGFSFQDAMNNS 119 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARPTASVMI 177 T + + L+ EI ++++I G+ A V+IV+PD +F + TA+VM+ Sbjct: 120 LATTDQERRQKYLYFLQNEIQNSLKTIDGVQDAIVNIVVPDQNAFVLSNTTNQATAAVML 179 Query: 178 RAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIV 234 + I V+ +V L +VTV+D+ GK+LTA + ++ Sbjct: 180 TLKPGVTLSSSQVKGIIDFVSKSVEGLKPENVTVIDNNGKILTAESDDTAENANSQFALQ 239 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIR 289 + +Q +++ N+ L G N LN D + I Y P + + RSI+ Sbjct: 240 KKVQEDLQQNLQTLLEQVFGPGNVVVRANVTLNFDKKTEDRIEYLPVEGNDNKGIVRSIQ 299 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 K+ ++ +Q + N P + + + +K E NYEIN + Sbjct: 300 ELKE--KATGTQGGNPAGTSSNNPPTTQT---TGSNTSDYNKTETTINYEINQIKTSLIE 354 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD---TI 406 K+E +S+AVVVNK +S +I +V+ A G GD + Sbjct: 355 AQGKIESISVAVVVNKN-------------LNNSMKQQIADLVAKAAG-----GDSRVQV 396 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 ++ M F ++ L + Q + + + ++ ALV G + +RR Sbjct: 397 SVQGMQFNQD-LLKTMQQQANVSKGVPMYAWAMLAALVLGGGLFFI------MMRRKKKE 449 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 E + P I+ + Sbjct: 450 TSLATAEEEALATAEP---------------------------------IEEIDFTYEDE 476 Query: 527 SDLRLLHMIEINEERFAKILRKWARSE 553 ++ +I+ E +I+R W E Sbjct: 477 KKKQIEKLIKEKPEIVVQIIRTWLNEE 503 >gi|269792946|ref|YP_003317850.1| flagellar M-ring protein FliF [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100581|gb|ACZ19568.1| flagellar M-ring protein FliF [Thermanaerovibrio acidaminovorans DSM 6589] Length = 524 Score = 327 bits (838), Expect = 3e-87, Method: Composition-based stats. Identities = 128/566 (22%), Positives = 221/566 (39%), Gaps = 66/566 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L++L FF L R + L + + + F YD L+ L + D + Sbjct: 8 LERLKGFF---LGLERWQRYSLVGAGALVLASLVLLAFVAGRTAYDPLFSGLTMEDQGAV 64 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L E I F++ ++I VP V +ARI LA G+P G+E+FD+ G+ Sbjct: 65 VEYLKEQKIPFKVDPGANAILVPRRNVYEARIALAQMGIPKGGV-VGFEIFDQ-PKMGMN 122 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 F Q + RALEGE++RTI I + ARV IV+P+ F + TASV++R Sbjct: 123 DFQQRVAYARALEGELSRTISKIDAVEEARVSIVIPEQRLFLEEQRPSTASVLVRLKPGR 182 Query: 184 V--YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----------ANEMERNILGKS 230 + I +LVA +V L DVTV+D++GK+L+ + R + Sbjct: 183 EIGQEQVRGIVNLVARSVEGLRPEDVTVVDTSGKVLSDLIHDDNLIYMSGSDGRAVSSVQ 242 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY--DPDSK-VERS 287 + + + E+E + L G V EL+ D + + PD K V RS Sbjct: 243 RELERQQEQELERKVRVMLEKVFGPGKAVVRVRVELDFDKKSTSRREFIPGPDGKGVIRS 302 Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 + +++ + P A N+P P +K + +NY+I T+ T Sbjct: 303 QQNVEESYTGPGTPPGGAPGTTTNIPGYVVN--PNQGGNVEYNKTDTVTNYDITTQESQT 360 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 ++RLS +V+V+ ++ + + V+AA GI+ RGD + Sbjct: 361 QSTPGAIKRLSASVIVDGQ-------------LDEAASQNLRQTVAAAIGIDEARGDRLV 407 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 I +M F + + + R + L+ L+ FL + Sbjct: 408 IQAMKF--DTTLADQMLAQLEAERRQRLIGAALVGLLVLLAAGGFGFLWYRRRK------ 459 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 A L+P + S +++ + + ++ + ++ Sbjct: 460 -------------------LAALARLVPQEGEQKAPSLKELLENPELMTAQGELAILEE- 499 Query: 528 DLRLLHMIEINEERFAKILRKWARSE 553 +L N E A +++ W E Sbjct: 500 --QLRLYASNNPEEVANLIKNWLAEE 523 >gi|78776673|ref|YP_392988.1| flagellar MS-ring protein [Sulfurimonas denitrificans DSM 1251] gi|78497213|gb|ABB43753.1| Flagellar FliF M-ring protein [Sulfurimonas denitrificans DSM 1251] Length = 566 Score = 327 bits (838), Expect = 3e-87, Method: Composition-based stats. Identities = 132/571 (23%), Positives = 246/571 (43%), Gaps = 32/571 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVS 58 + QL + L + + LI++ ++ + + + Y+ L+ L Sbjct: 6 LFSQLATLY---DKLTKQQKLIISGAVVGIVAFIVFLVVYTEKRDALSKYETLFDSLSSE 62 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 D ++ L + NI + I DN + I VP + V K RI +A+ G+P +S G+ELFDK Sbjct: 63 DAAKVIEQLEKDNIPYEILDN-NIIKVPKNAVYKERIAIASLGIPKNSG-VGFELFDKQE 120 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178 FG TSF Q + +RA+EGE++RTI S++ I +A V + +P F + PTASVMI Sbjct: 121 -FGATSFDQNVKYLRAIEGELSRTINSLAPIESASVSLALPKETLFVEKQGEPTASVMIT 179 Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQA 236 I K I++LV+AAVPNL +V ++D+ G+ L ++ E +G+ S+ Q Sbjct: 180 LIEGRKLSSKQIRGIKNLVSAAVPNLSASNVMLIDNDGETL-GDDDEMAQMGELSSVQQN 238 Query: 237 I----QHEIEMNINKALAAFLGVD-NFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + + + I + ++ F+G + + V E + Q VYDP++ V RS +LS Sbjct: 239 FKTKEEKKKQRKIIEVVSPFVGGEQKVVAQVTIEFDFSIQNSTSEVYDPEN-VVRSEQLS 297 Query: 292 KDAQ-RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 ++ + S ++ N+ V + +++E +K +NYE+ T + Sbjct: 298 EEKRDGSAPAEVGGVPGTVSNIGPV--EGLASNKTIEKYEKNTGTTNYEVGKTVSTTKSE 355 Query: 351 NYKLERLSIAVVVNKG--RLTEVLGRSA----DQGKIDSYLAEINKIVSAATGINSRRGD 404 +++R++ AVVV+ ++ G+ + +S L + +VS + GI+ RGD Sbjct: 356 FARIKRVTAAVVVDGKYNYKSDADGKPTSELEYEALSESDLEALRALVSRSIGISEDRGD 415 Query: 405 TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 I++ ++ F S + + A ++ LL+ L + Sbjct: 416 QISVQNLQFKRADSDPSKERVNQVVSFSQTYLAPFSELFKYIFVLLLLLILYKKVISPFA 475 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 E I P + ++ ++ + + Sbjct: 476 QRMLEISKE--EDDIGKPILDIEDDEDEDLVEKVQSMRKKVEEQLGVGNHFNE--DELKY 531 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIE 555 ++ M + + E A +L+ E + Sbjct: 532 DVLLEKIKSMTDESPEAVAHVLQALLTEESD 562 >gi|300854208|ref|YP_003779192.1| flagellar M-ring protein FliF [Clostridium ljungdahlii DSM 13528] gi|300434323|gb|ADK14090.1| flagellar M-ring protein FliF [Clostridium ljungdahlii DSM 13528] Length = 532 Score = 326 bits (837), Expect = 5e-87, Method: Composition-based stats. Identities = 120/567 (21%), Positives = 222/567 (39%), Gaps = 52/567 (9%) Query: 4 LDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 + ++ Q FK+ L R + + + + + + + + Y L+ L+ +D Sbjct: 1 MGKISQIFKNLIGKWKDLSRNKKIAFSVIAVGIVAALIFGGLTLGKTKYAVLFSNLDATD 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I L +D ++ GSSI VP V K R+ ++ + ++ + G+EL DK N Sbjct: 61 SATIYKQLQSDKVDAKVQ--GSSILVPKDQVDKIRMQTLSE-VQLTNGSQGFELLDKSN- 116 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 FG T I RAL+GEI RTI+S+ I ARVH+V+PD F K +ASV I+ Sbjct: 117 FGQTDQQMNINYQRALQGEIERTIKSLPQIENARVHLVLPDNTEFVKDTQPGSASVTIKL 176 Query: 180 INPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-------ANEMERNI--LG 228 + A+ LV+ +V N+ +V V+D LL+ + + + Sbjct: 177 KPGQTLSQDQTKALVALVSGSVKNIPKENVEVIDDKLNLLSRDLYQNKSGDSSSSTIPAD 236 Query: 229 KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288 K + Q + ++E + L G + + + A+L+ D Q YDP + V Sbjct: 237 KQQELQQKYEDDMEKRLLAMLEPIYGKNKVKVQINADLDFDAVQQDSTTYDPKNVVVSEH 296 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 ++ + + S V+ NM + S S +N E NY+++ T Sbjct: 297 TVNNTNTGATNNASTSP--VDNNMSNTSVNNANGGNSTQN----EVTRNYDVSKVEQKTI 350 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 ++RL+ +V ++ D+ I + +A G N RGDTI + Sbjct: 351 KAPGSVKRLTASVALDGTV-------------DDATKTSIRNLAVSAIGYNQTRGDTINV 397 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV-TFLGLHALRRLHNID 467 ++ F ++ + ++ I + G LL+ +G RR H D Sbjct: 398 EAIPFDTTAQDSAKKDLDAMQKAEAQANRNKIIIGASIAGALLIAAIVGFILWRRKHAED 457 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 + L + + + D+ N+ F +++V + Sbjct: 458 ---------EEELFDEELGNTQGIDAVIGDDDLTKEQNKLKFKPVEFEHETEDTHVENE- 507 Query: 528 DLRLLHMIEINEERFAKILRKWARSEI 554 + + ++ A I++ W + Sbjct: 508 ---IKKYAKDKPDQVADIIKAWIAEDE 531 >gi|283834471|ref|ZP_06354212.1| flagellar M-ring protein FliF [Citrobacter youngae ATCC 29220] gi|291070018|gb|EFE08127.1| flagellar M-ring protein FliF [Citrobacter youngae ATCC 29220] Length = 560 Score = 326 bits (837), Expect = 5e-87, Method: Composition-based stats. Identities = 132/573 (23%), Positives = 247/573 (43%), Gaps = 42/573 (7%) Query: 3 ILDQLLQFFKSGT-SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 ++ ++ QF S + L + L L + V + + + + Y +LY E V+ Sbjct: 4 LIKKVTQFLPSFSFRLDGNKRLALLAAAAVAATAIIVSVLWNGNHGYVSLYGSQENLPVS 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 +I L +++RI I VP + K R+ LAA+G+ + SGYEL DK G Sbjct: 64 QIVTVLDGEKLEYRIDPQSGQILVPEEALSKTRMTLAAKGV-QAMLPSGYELMDKDEVLG 122 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAI 180 + F+Q I R+LEGE+A++I ++ + +ARVH+ + + SF + +ASV++R Sbjct: 123 ASQFVQNIRYKRSLEGELAQSIMTLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLH 182 Query: 181 NPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIV 234 S AI HLV+ +VP+L V+V+D G LL+ A E K I+ Sbjct: 183 YGSKLDLDQVNAIVHLVSGSVPDLKASLVSVVDQAGNLLSDGIGAGEAVSAATRKRDQIL 242 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 + IQ + ++ L + +G N+R +V+ +L++ + Y KV R + Sbjct: 243 KDIQDKTRASLANVLDSLVGTGNYRVSVMPDLDLSNIDETQEHYGDTPKVNR----EETV 298 Query: 295 QRSETSQPE-SAVTVEQNMPHVSDRKVPLPRSLEN-----------TDKKEEQSNYEINT 342 S+T+Q N P ++ +V + + E + +Y + Sbjct: 299 LDSDTNQIAMGIPGSLSNRPPLAANQVANGTAAGTAPEESRQPAALSKHSENKRDYSWDR 358 Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402 H + ++RL++AVV+N+ A + ++ +++ A GI+++R Sbjct: 359 SVEHIQHPGFDIKRLNVAVVLNQSA-------PALKNWKPEQTTQLTALLNNAAGIDAKR 411 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 GD ++++ ++F+ + V + D +++ + + LL L L +R Sbjct: 412 GDNLSLSLLNFVPQSVPVEPVVPLWKDD-------SILAWVRLIGCGLLALLLLLFVVRP 464 Query: 463 LHNIDDAKKGEVGGKSI-LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521 L A++ + L PI+ + F +L S+ + Sbjct: 465 LMKRLTAERRRTPTPELALDAAPIAIPADKTHFAAAEDERKNIELPSFPGDDSLPSQSSG 524 Query: 522 YVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 K L+ L M + + R A++LR+W S Sbjct: 525 LEVKLEFLQKLAMSDTD--RVAEVLRQWITSNE 555 >gi|54308116|ref|YP_129136.1| flagellar MS-ring protein [Photobacterium profundum SS9] gi|46912542|emb|CAG19334.1| Putative polar flagellar M-ring protein FliF [Photobacterium profundum SS9] Length = 580 Score = 326 bits (837), Expect = 5e-87, Method: Composition-based stats. Identities = 104/555 (18%), Positives = 221/555 (39%), Gaps = 34/555 (6%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 L R IL+L+ I V +++ M ++ P L + +++ I + + Sbjct: 45 GNLDLLRQVILVLSVSICVALIVMM--VMWIKEPEMRPLGT-YDTAELISILDHFDQTKV 101 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 + + +G++I VP+ ++ L GL ++S G ++ + FG++ ++ Sbjct: 102 QYEL--DGNTIRVPADDFSSIQLGLTRAGL-NNSVAEGDDILLQDMGFGVSQRLEGERLK 158 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEA 190 + E ++AR I+ I + A+V + +P F + +A+V + K ++ Sbjct: 159 LSRERQLARAIEQIRQVRKAQVLLALPKQSVFVRHNQEASATVFLTLGTNGSLKQQEVDS 218 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKA 248 I +VA+AVP+L VTV D G+LL++ + + K + + + + I+ Sbjct: 219 IVDMVASAVPSLKPNRVTVTDQHGRLLSSGTEDPSATAQRKEYELERKQEQGMREKIDSI 278 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------T 299 L LG N+ S V ++ Q+ +DP + RS ++ + Sbjct: 279 LIPILGFGNYTSQVDVTMDFSAQEETRKRFDPSTPSTRSEYTVENYNNGNIVAGIPGALS 338 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 +QP + ++ Q++ + + S +E N+E++T + R ++ Sbjct: 339 NQPPADASIPQDIADMQSGR----GSSNGASHREATRNFELDTVISHRRAQTGTVSRQTV 394 Query: 360 AVVVNKGRLTEV-LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 +V V+ LT G ++ L +I +++ G + RGD + + +M F Sbjct: 395 SVAVDYKSLTNPETGEVTRVPVSEAELLKIRRLLMGGVGFSEARGDMLEVIAMPFALPTQ 454 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 + + + + ALV +V +++ + L H D + G Sbjct: 455 ELIAELPIWENPNFNTWIRWLAAALVIIVIVVVLIRPAMKKLLYPHQAADGTPLDKNGLP 514 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 ILS + + L D L SSN D+ N + + + ++ Sbjct: 515 ILSSGDDIDLIGSELDSVDGFELSSSNLDLP----------NLHKDEDLLKAVRALVANE 564 Query: 539 EERFAKILRKWARSE 553 + A++++ W + Sbjct: 565 PDLAAQVVKNWVNED 579 >gi|330889061|gb|EGH21722.1| flagellar MS-ring protein [Pseudomonas syringae pv. mori str. 301020] Length = 428 Score = 326 bits (836), Expect = 5e-87, Method: Composition-based stats. Identities = 102/403 (25%), Positives = 171/403 (42%), Gaps = 38/403 (9%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y LY L D +I L Sbjct: 24 LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + ANI++ + N ++ V S V +ARI LA G+ + +N G+E+ DK G + FM+ Sbjct: 84 TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 R LEGE+ARTI +++ + ARVH+ +P F + +P+ASV++ + Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEM 243 AI +LVA +VP L +TV+D G LL+ A E + GK + ++ + Sbjct: 204 SQVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE----- 298 + L LG D +++ V A ++ + ++PD RS + + + S Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNEQRSSSSSTGG 323 Query: 299 -----TSQPESAVTVEQNM----------------------PHVSDRKVPLPRSLENTDK 331 ++QP T QN + D P Sbjct: 324 VPGALSNQPPGPATAPQNATAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPAD 383 Query: 332 K--EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372 K + N+E++ T +L RLS+AVVV+ T Sbjct: 384 KRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAA 426 >gi|297544710|ref|YP_003677012.1| flagellar M-ring protein FliF [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842485|gb|ADH61001.1| flagellar M-ring protein FliF [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 503 Score = 326 bits (835), Expect = 7e-87, Method: Composition-based stats. Identities = 118/567 (20%), Positives = 220/567 (38%), Gaps = 85/567 (14%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 +QL F+ + ++ ++A ++ + + L + + VN P+Y LY L + D Sbjct: 7 NFREQLTNFWNKFDKKQKMQLGVIAILLFIGVSLLV---YIVNRPNYVVLYSDLSIKDAG 63 Query: 62 RISVALSEA-NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK-VNS 119 + L + ++IS++G +I VP+ + R+ LA +G+P G+ D NS Sbjct: 64 VVVEKLKTEFKVPYKISNDGKTILVPAQYKDEVRMKLATEGIP----EGGFSFQDAMNNS 119 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARPTASVMI 177 T + + L+ EI ++++I G+ A V+IV+PD +F + TA+VM+ Sbjct: 120 LATTDQERRQKYLYFLQNEIQNSLKTIDGVQDAIVNIVVPDQNAFVLSNTTNQATAAVML 179 Query: 178 RAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIV 234 + I V+ +V L +VTV+D+ GK+LTA + ++ Sbjct: 180 TLKPGVTLSSSQVKGIIDFVSKSVEGLKPENVTVIDNNGKILTAESDDTAENANSQFALQ 239 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIR 289 + +Q +++ N+ L G N LN D + I Y P + + RSI+ Sbjct: 240 KKVQEDLQQNLQTLLEQVFGPGNVVVRANVTLNFDKKTEDRIEYLPVEGNDNKGIVRSIQ 299 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 K+ ++ +Q + N P + + + +K E NYEIN + Sbjct: 300 ELKE--KATGTQGGNPAGTSSNNPPTTQT---TGSNTSDYNKTETTINYEINQIKTSLIE 354 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD---TI 406 K+E +S+AVVVNK +S +I +V+ A G GD + Sbjct: 355 AQGKIESISVAVVVNKN-------------LNNSMKQQIADLVAKAAG-----GDSRVQV 396 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 ++ M F ++ L + Q + + + ++ ALV G + +RR Sbjct: 397 SVQGMQFNQD-LLKTMQQQANVSKGVPMYAWAMLAALVLGGGLFFI------MMRRKKKE 449 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 E + P I+ + Sbjct: 450 TSLATAEEEALATAEP---------------------------------IEEIDFTYEDE 476 Query: 527 SDLRLLHMIEINEERFAKILRKWARSE 553 ++ +I+ + +I+R W E Sbjct: 477 KKKQIEKLIKEKPDIVVQIIRTWLNEE 503 >gi|91792682|ref|YP_562333.1| flagellar MS-ring protein [Shewanella denitrificans OS217] gi|91714684|gb|ABE54610.1| flagellar M-ring protein FliF [Shewanella denitrificans OS217] Length = 566 Score = 326 bits (835), Expect = 7e-87, Method: Composition-based stats. Identities = 104/530 (19%), Positives = 210/530 (39%), Gaps = 29/530 (5%) Query: 38 AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97 + P Y L K++ +++ ++ L + I + I + I VP ++ L Sbjct: 53 FVMMWAQEPEYRPL-GKMDTAEMIQVLDVLDKNQIKYEIQLD--VIKVPEDQYQDIKLIL 109 Query: 98 AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 + G+ S+ + Y K + FG++ M++ + E +AR I+ + + A+V + Sbjct: 110 SRAGIESNVDTNDY--LSKDSGFGVSQRMEQARLKHSQELNLARVIEELKSVSRAKVILA 167 Query: 158 MPDMGSFRKIGARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 +P F + ++P+A+V++ S+ + +AI +VA+AV L+ VTV DS G+L Sbjct: 168 LPKENVFARNQSQPSATVVVNVRRGSLGQEEIDAIVDIVASAVQGLEPERVTVTDSNGRL 227 Query: 217 LTAN--EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 L + + + L +VQ + E I L LG +NF S V ++ + Sbjct: 228 LNSGSQDGASARARRELELVQNQEAEYRKKIESILMPILGPENFTSEVDVTMDFTAIEQT 287 Query: 275 EIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV------SDRKVPLPRSLEN 328 + PD RS + E + N P + + + + Sbjct: 288 AKRFAPDLPALRSEMTIETNTNGE--RVGGIPGALSNQPPMESDIPENAGEATESVASNG 345 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN-KGRLTEVLGRSADQGKIDSYLAE 387 +E N+E++T T + R+S++V ++ K G+ + + LA Sbjct: 346 NVHREATRNFELDTTISHTRQQIGVVRRVSVSVAIDFKAGAAGEDGQVTRVARTEQELAN 405 Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447 I +++ A G +++RGD + + ++ F++ L + R I A+V LV Sbjct: 406 IRRLLEGAVGFSAQRGDMLEVVTVPFMDQLLEELPAPDLWEQPWFWRAIKLGIGAIVILV 465 Query: 448 GTLLVTFLGLHALRRLHNIDDAKKGEVG--GKSILSPPPISSAVTTGLMPNDNIALDSSN 505 L V LRRL + + + G + +A T G+ L++ Sbjct: 466 LILAV---VRPMLRRLIDPEGVNMPDDTRLGHELAEIEDQYAADTLGM-------LNTKE 515 Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + N + + ++ E ++++ W + + Sbjct: 516 AEYSYADDGSIHIPNLHKDDDMIKAIRALVANEPELSTQVVKNWLLEDAQ 565 >gi|283784015|ref|YP_003363880.1| lateral flagellar M-ring protein [Citrobacter rodentium ICC168] gi|282947469|emb|CBG87016.1| lateral flagellar M-ring protein [Citrobacter rodentium ICC168] Length = 554 Score = 326 bits (835), Expect = 8e-87, Method: Composition-based stats. Identities = 121/534 (22%), Positives = 238/534 (44%), Gaps = 43/534 (8%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 + + ++ Y +LY + E V++I L +++RI I VP + K R+ LA Sbjct: 41 SLLWNSNHGYVSLYGRQENLPVSQIVTVLDGEKLEYRIDPQSGQILVPEEALSKTRMALA 100 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 A+G+ + +GYEL DK G + F+Q I R+LEGE+A++I ++ + +ARVH+ + Sbjct: 101 AKGV-QALLPNGYELMDKDEVLGSSQFVQNIRYKRSLEGELAQSIMTLDAVESARVHLAL 159 Query: 159 PDMGSF-RKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 + SF + +ASV++R + AI HLV+ ++P L V+V+D G Sbjct: 160 NEESSFVVSDRPQNSASVVVRLHYGAKLDMDQVNAIVHLVSGSIPGLKATQVSVVDQAGN 219 Query: 216 LLTANEMERNILGKSL----SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ 271 LLT + + I+Q IQ + ++ L + +G N+R +V+ +L++ Sbjct: 220 LLTDGTGAGEAVAATTRKHDQILQDIQDKTRASVANVLDSLVGPGNYRISVMPDLDLSDI 279 Query: 272 QIREIVYDPDSKVERSIRLSKDAQRSETSQPE-SAVTVEQNMPHVSDRKVPLPRSLENTD 330 Y + KV R ++ Q S+T+Q N P V+ +V S + Sbjct: 280 DETREHYGNEPKVNR----EENVQDSDTNQIAMGIPGSLSNRPPVAPNQVTNNASATTAE 335 Query: 331 K---------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI 381 E + +Y + + + ++RL +AVV+N+ A + Sbjct: 336 SNPPQALSKHSESKRDYSYDRSVQHIQYPGFTVKRLKVAVVLNQEA-------PALKNWT 388 Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441 ++ +++ A GI+++RGD ++++ + F+ + + + + + + Sbjct: 389 PEQTRQLTDLLNNAAGIDTQRGDNLSLSLLRFVPPKTPVEPVIPLWKDESVLAWARMI-- 446 Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKG-EVGGKSILSPPPISSAVTTGLMPNDNIA 500 L+ LL+ F+ ++RL + + E S+ + P +A +D + Sbjct: 447 -GCGLLALLLLLFVVRPMMKRLTAVRQSLPALEKVAASVPAIEPQFAAA-----EDDRKS 500 Query: 501 LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 ++ + F +L + + K L+ L M + + R A++LR+W S Sbjct: 501 IELPS---FPGDDSLPPQSSGLEVKLEFLQKLAMSDTD--RVAEVLRQWITSNE 549 >gi|94495429|ref|ZP_01302009.1| flagellar M-Ring protein [Sphingomonas sp. SKA58] gi|94424817|gb|EAT09838.1| flagellar M-Ring protein [Sphingomonas sp. SKA58] Length = 586 Score = 325 bits (833), Expect = 1e-86, Method: Composition-based stats. Identities = 119/579 (20%), Positives = 242/579 (41%), Gaps = 51/579 (8%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 +D + + ++ + + AA + P +L+ L SD + + Sbjct: 33 MDAIKARVTGFMKQPAVAKSLPLLGLIGTVAVAGAAWLALREPPQRDLFRGLPDSDKSAV 92 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + L + + + ++G +++V KA++ LAAQGLP S+ + G + D + G + Sbjct: 93 AQVLDQNGVRYDFDNSG-AMTVAEDDYFKAKMMLAAQGLPKSAPD-GNSMIDSL-PMGAS 149 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 ++ A E ++ARTI++I + A+VH+ + F + +P+ASVM+R Sbjct: 150 RAVEGEKLRSAREMDLARTIEAIDSVETAKVHLAVEPPSVFLRERTKPSASVMLRLAQGR 209 Query: 184 --VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEI 241 + AI HLVA+++P L D++++D G+LLT N+ + L++ I+ Sbjct: 210 QLTQQQVSAIVHLVASSIPELSPDDISLVDQNGRLLTDNDGNAG-DDRQLAMQGKIEDRY 268 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS---------- 291 ++ L LG NF + V AELN +Q Y D RS S Sbjct: 269 RQSVIALLTPILGDGNFSTEVHAELNFAERQATRETYPQDEARLRSEAGSWASDPRGQGK 328 Query: 292 ---KDAQRSETSQPESAVTVEQNMPH------VSDRKVPLPRSLENTDKKEEQS---NYE 339 + ++Q TV Q P+ + P + + K E++ N+E Sbjct: 329 GEASGIPGALSNQAPVDPTVTQTNPNGQAVTQGQTAQAQGPGTPADPLMKTEETFNRNFE 388 Query: 340 INTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN 399 + + ++RLS+AV ++ G + + +A + +V A G + Sbjct: 389 LGREVSVVRDATGTVKRLSVAVALDNG--------PDGKPRSPQEIAALEALVKGAVGFD 440 Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA 459 RGD + ++S F++ + + ++ L+R+ + ++ AL+ + G +G Sbjct: 441 QTRGDVVALSSRSFVKEATAETPWYEADWIAPLARNVSALLVALLVIFG------IGRPL 494 Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519 L+R +A E + + IS+ +T + N D+ S + + R Sbjct: 495 LKRRAAAQEAAAAERAEQKQVIGQAISTELTKQAVANPADPSAPVTLDMISSTYDYAQRA 554 Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIEDRY 558 + + + ++ + +R A ++R + +++ Sbjct: 555 DL---------IRNFVKQDPDRAALVVRDLLKDAKKEKE 584 >gi|186896782|ref|YP_001873894.1| flagellar MS-ring protein [Yersinia pseudotuberculosis PB1/+] gi|186699808|gb|ACC90437.1| flagellar M-ring protein FliF [Yersinia pseudotuberculosis PB1/+] Length = 546 Score = 325 bits (833), Expect = 1e-86, Method: Composition-based stats. Identities = 126/560 (22%), Positives = 246/560 (43%), Gaps = 29/560 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +LD++ Q G LG IL S + + + + + +S Y L+ E + + Sbjct: 1 MLDKIKQKLSPG-QLGENTKTILMSAVALLVTAAIIFSLWRSSQGYTALFGSQENIPITQ 59 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + L I +RI+ + + V + +GKARI LAA+G+ +++ GYEL DK + G Sbjct: 60 VVEVLEGEAIAYRINPDNGQVLVAENQLGKARILLAAKGI-TATLPIGYELMDKESMLGS 118 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRAIN 181 + F+Q + R+LEGE+A+++ ++S + ARVH+ M + SF A +ASV++R Sbjct: 119 SQFIQNVRYKRSLEGELAQSMMALSAVEYARVHLGMSEASSFAISNHADNSASVVLRLRY 178 Query: 182 PSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQ 235 + AI LVA ++P + +V V+D G+LL+ AN + + Sbjct: 179 GQTLSTEQVGAIVQLVAGSIPGMKPANVRVVDQHGELLSQAYQANSEGVPSVKSGTELAH 238 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 +Q E NI L + +G +N+R +V +L+M + Y PD R++ + Sbjct: 239 YLQSTTEKNIANLLNSVIGANNYRISVSTQLDMSRIEETAEHYGPDP------RINDENI 292 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 + E S + A+ + ++ + + ++ + + Q Y + + YKLE Sbjct: 293 QQENSNDDMAMGIPGSLSNQPIPQSQAGQTPAAVSRSQAQRKYIYDRNIRHVRYPGYKLE 352 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 ++++AVV+NK + E+ +++ A GI+ +RGD++TI M F Sbjct: 353 KMTVAVVLNKS-------LPVLEQWTPEQQEELKRLIEDAAGIDVKRGDSLTINMMAFAV 405 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 L + + R + L+ L+ L L + ++ ++ + Sbjct: 406 PTLIDEPVMPWWQEPSTFRWAELLGIGLLSLLVLLFGV----RPLMKRYSRKGSENLPLA 461 Query: 476 GKSILSPPPISSAVTTGLMPNDNI-ALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 S + + T + ++ + S +L + + +K + L + Sbjct: 462 ISSASADEALDHVDTGVDGAESSPRTENAFSASSLWKSDDLPEQGSGLETKIAH--LQQL 519 Query: 535 IEINEERFAKILRKWARSEI 554 + ER A+++++W S Sbjct: 520 AQSETERTAEVIKQWINSNE 539 >gi|254445735|ref|ZP_05059211.1| flagellar M-ring protein FliF [Verrucomicrobiae bacterium DG1235] gi|198260043|gb|EDY84351.1| flagellar M-ring protein FliF [Verrucomicrobiae bacterium DG1235] Length = 525 Score = 325 bits (832), Expect = 2e-86, Method: Composition-based stats. Identities = 128/517 (24%), Positives = 243/517 (47%), Gaps = 22/517 (4%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + +Q + ++S + R +++ + ++++ + + + P LY KL + + Sbjct: 1 MGNQFKEIWQSLGANQRISLILASGLVVLAM---IGMMIWAAQPDMQLLYGKLSAEEAGK 57 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L + + F G+SI V +S V + R+ LA +G+P+ S G+ELFD+ SFG+ Sbjct: 58 IVAKLEQKGVAFETGSGGNSIYVEASQVHRIRMELATEGIPAGGSGPGFELFDE-GSFGI 116 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMIRAI 180 + F+Q +RA++GE+ARTI G+ +ARV +VMP+ R+ RPTASV + Sbjct: 117 SDFVQRTNFLRAVQGELARTISQFDGVESARVMVVMPENRLLASREGQDRPTASVFVDG- 175 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQA 236 + +IRHLVA A+ L + DV V+DS G +L+ ++ + I + ++ Sbjct: 176 GGLSTGTVNSIRHLVANAIQRLSINDVVVVDSMGTVLSEELRSDGIGSGISNDVIKYRKS 235 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ- 295 +++ + L LG + V ++ + Q E +DP+S+V RS +D+Q Sbjct: 236 LENYFTGKVQSMLDRVLGPNQSEVRVAVDIETASVQTTEKTFDPESQVARSTVSDEDSQV 295 Query: 296 -RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQS--NYEINTKSIATTHDNY 352 R + + A V N P +L+ + K + N+EIN + +++ + Sbjct: 296 ERETSGEGAGATGVSSNTPAAGGAGQTAFSTLKEREDKNKTRTENFEINERIVSSVQNPG 355 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG----DTITI 408 ++RL+ +++V R+ +V G+ + L E++ IV A GI G D +T+ Sbjct: 356 SIKRLTASLLV-AKRMEDVRGQMNFVDRTPEQLEELSDIVVTALGIQLAPGQTAADFVTV 414 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 M F + N G + + + R+ N + ++G ++ F L+R Sbjct: 415 KEMAFAVDPFENHGEL-LKEDATIQRYIELGKNGIGAVLGIGVIIFFM-QMLKRYKPEKM 472 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505 + + + + + ++V T M N+ I +N Sbjct: 473 SIEVLQPDQMLQTRKMEDTSVVTPEMLNELIRQKPAN 509 >gi|170755222|ref|YP_001782279.1| flagellar MS-ring protein [Clostridium botulinum B1 str. Okra] gi|169120434|gb|ACA44270.1| flagellar M-ring protein FliF [Clostridium botulinum B1 str. Okra] Length = 526 Score = 325 bits (832), Expect = 2e-86, Method: Composition-based stats. Identities = 106/565 (18%), Positives = 226/565 (40%), Gaps = 54/565 (9%) Query: 4 LDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 +++L +FFK T + + + + + L I +A + Y L+ ++ +D Sbjct: 1 MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + L + ++ ++ G++I VP V + R+ + ++ +P ++ + G+E+ DK Sbjct: 61 SGTVLQKLKDKKVEAKVE--GNNILVPKDKVDELRMQMLSE-VPLTNGSQGFEILDKSQ- 116 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 FG T +I RAL+GE+ RTI+ + RVH+V+P+ +F K ASV + Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNTRVHLVLPEETAFVKETQPGRASVTLNL 176 Query: 180 INPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--------EMERNILGK 229 + ++I LV+ +V N+ +V V+D+ LLT N E K Sbjct: 177 KQGQTLSKEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLTKNLFDASGSLEEATTSAEK 236 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 + + + +++ + L A G D + + +L+ D + + YDP + V S Sbjct: 237 QQQLQKNYEKDLQNRLVSMLEAVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNVVV-SEH 295 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 K+ ++ + +V N ++ +R E + + E NYEI+ + Sbjct: 296 SIKEKNQNNAGGNNTNGSVVDN--NMVNRTTQNNNGSETSSRDENTKNYEISKTQQDSIK 353 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 ++RL+ ++V++ + + + + +A G + +RGDTI + Sbjct: 354 APGSVKRLTASIVLDGN-------------IDEETRSAVRNLAVSAIGYDEKRGDTINVE 400 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 + F + + L LL+ + +++ +N ++ Sbjct: 401 GLPFDTAAKDKVKKDLEDMQKTEKTKERIKLFTAIGLGVLLLLGAIIFFIIKKRNNDEEY 460 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 ++ E G ++ + P +D QD +H N Sbjct: 461 EEDEEGLDILIDDNDSETKQVPKFKP-----IDLETQDEKTHVENE-------------- 501 Query: 530 RLLHMIEINEERFAKILRKWARSEI 554 + + ++ A+I++ W + Sbjct: 502 -IRKYAKDKPDQVAEIIKSWLAEDE 525 >gi|90411023|ref|ZP_01219037.1| flagellar M-ring protein [Photobacterium profundum 3TCK] gi|90328236|gb|EAS44547.1| flagellar M-ring protein [Photobacterium profundum 3TCK] Length = 580 Score = 324 bits (831), Expect = 2e-86, Method: Composition-based stats. Identities = 105/555 (18%), Positives = 222/555 (40%), Gaps = 34/555 (6%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 L R IL+L+ I V +++ M ++ P L + +++ I + + Sbjct: 45 GNLDLLRQVILVLSVSICVALIVMM--VMWIKEPEMRPLGT-YDTAELITILDHFDQTKV 101 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 + + +G++I VP+ ++ L GL +++ G E+ + FG++ ++ Sbjct: 102 KYEL--DGNTIRVPADNFSSIQLGLTRAGL-NNAVAEGDEILLQDMGFGVSQRLEGERLK 158 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEA 190 + E ++AR I+ I + A+V + MP F + +A+V + K ++ Sbjct: 159 LSRERQLARAIEQIRQVRKAQVLLAMPKQSVFVRHNQEASATVFLTLGTNGSLKQPEVDS 218 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKA 248 I +VA+AVP+L VTV D G+LL++ + + K + + + + I+ Sbjct: 219 IVDMVASAVPSLKPNRVTVTDQHGRLLSSGTEDASATAQRKEYELERKQEQAMREKIDSI 278 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------T 299 L LG N+ S V ++ Q+ +DP + RS ++ + Sbjct: 279 LIPILGFGNYTSQVDVAMDFSAQEETRKRFDPSTPSTRSEYTVENYNNGNIVAGIPGALS 338 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 +QP + ++ Q++ + + S + +E N+E++T + R ++ Sbjct: 339 NQPPADASIPQDIADMQSGR----GSSDGASHREATRNFELDTVISHLRAQTGTVSRQTV 394 Query: 360 AVVVNKGRLTEV-LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 +V V+ LT G ++ L +I +++ G + RGD + + +M F Sbjct: 395 SVAVDYKSLTNPETGEVTRVPVSEAELLKIRRLLMGGVGFSEARGDMLEVIAMPFALPTQ 454 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 + + + + ALV +V +++ + L H D + G Sbjct: 455 ELIAELPIWENPNFNTWVRWLAAALVIIVIVIVLIRPAMKKLLYPHQAADGTPLDKNGLP 514 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 ILS + + L D L SSN D+ N + + + ++ Sbjct: 515 ILSSGDDIDLIGSELDSVDGFELSSSNLDLP----------NLHKDEDLLKAVRALVANE 564 Query: 539 EERFAKILRKWARSE 553 + A++++ W + Sbjct: 565 PDLAAQVVKNWVNED 579 >gi|325526932|gb|EGD04395.1| flagellar MS-ring protein [Burkholderia sp. TJI49] Length = 367 Score = 324 bits (831), Expect = 2e-86, Method: Composition-based stats. Identities = 94/321 (29%), Positives = 152/321 (47%), Gaps = 14/321 (4%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VPS+ V + R+ LAA G Sbjct: 49 WSRAPDYRVLYSNLSDRDGGAIITALQQANVPYKFADAGGAILVPSNQVHETRLKLAAMG 108 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RTI+SI+ + ARVH+ +P Sbjct: 109 LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLAIPKP 166 Query: 162 GSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV + V +AI +V++ VP++ +VT++D G LLT Sbjct: 167 SVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMSAKNVTIVDQDGNLLTQ 226 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ ++ + I+ LA G N RS V A+++ + Y Sbjct: 227 PASASGLDASQLKYVQQVEQNTQKRIDAILAPIFGAGNARSQVSADIDFSRLEQTSENYG 286 Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH-------VSDRKVPLPRSLENT 329 P+ ++S S+ S S N P V+ P++ + Sbjct: 287 PNGSPQQSAIRSQQTSTSTELAQSGASGVPGALSNTPPQPASAPIVAGNGANAPQTTPVS 346 Query: 330 DKKEEQSNYEINTKSIATTHD 350 D+K++ +NYE++ Sbjct: 347 DRKDQTTNYELDKTIRHLEQP 367 >gi|226950075|ref|YP_002805166.1| flagellar M-ring protein fliF [Clostridium botulinum A2 str. Kyoto] gi|226842546|gb|ACO85212.1| flagellar M-ring protein fliF [Clostridium botulinum A2 str. Kyoto] Length = 526 Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 106/565 (18%), Positives = 226/565 (40%), Gaps = 54/565 (9%) Query: 4 LDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 +++L +FFK T + + + + + L I +A + Y L+ ++ +D Sbjct: 1 MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + L + ++ ++ G++I VP V + R+ + ++ +P ++ + G+E+ DK Sbjct: 61 SGTVLQKLKDKKVEAKVE--GNNILVPKDKVDELRMQMLSE-VPLTNGSQGFEILDKSQ- 116 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 FG T +I RAL+GE+ RTI+ + RVH+V+P+ +F K ASV + Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNTRVHLVLPEETAFVKETQPGRASVTLNL 176 Query: 180 INPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--------EMERNILGK 229 + ++I LV+ +V N+ +V V+D+ LLT N E K Sbjct: 177 KQGQNLSKEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLTKNLFDASGSLEEATTSAEK 236 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 + + + +++ + L A G D + + +L+ D + + YDP + V S Sbjct: 237 QQQLQKNYEKDLQNRLVSMLEAVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNVVV-SEH 295 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 K+ ++ + +V N ++ +R E + + E NYEI+ + Sbjct: 296 SIKEKNQNNAGGNNTNGSVVDN--NMVNRTTQNNNGSETSSRDENTKNYEISKTQQDSIK 353 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 ++RL+ ++V++ + + + + +A G + +RGDTI + Sbjct: 354 APGSVKRLTASIVLDGN-------------IDEETRSAVRNLAVSAIGYDEKRGDTINVE 400 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 + F + + L LL+ + +++ +N ++ Sbjct: 401 GLPFDTAAKDKVKKDLEDMQKTEKTKERIKLFTAIGLGVLLLLGAIIFFIIKKRNNDEEY 460 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 ++ E G ++ + P +D QD +H N Sbjct: 461 EEDEEGLDILIDDNDSETKQVPKFKP-----IDLETQDEKTHVENE-------------- 501 Query: 530 RLLHMIEINEERFAKILRKWARSEI 554 + + ++ A+I++ W + Sbjct: 502 -IRKYAKDKPDQVAEIIKSWLAEDE 525 >gi|323705446|ref|ZP_08117021.1| flagellar M-ring protein FliF [Thermoanaerobacterium xylanolyticum LX-11] gi|323535348|gb|EGB25124.1| flagellar M-ring protein FliF [Thermoanaerobacterium xylanolyticum LX-11] Length = 502 Score = 324 bits (830), Expect = 3e-86, Method: Composition-based stats. Identities = 120/565 (21%), Positives = 224/565 (39%), Gaps = 82/565 (14%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 I +Q+ F+ + +I I+A +++ I L + + +N P+Y+ LY L D Sbjct: 7 NIREQIDNFWNKFDKKQKIQIGIIALLLIGSIALLL---YILNRPNYEVLYSGLSTKDAG 63 Query: 62 RISVALS-EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK-VNS 119 + L E I ++I +GS+I VP+ +AR+ LA +G+P G+ D NS Sbjct: 64 TVVDKLKNELKIPYKIEGDGSTILVPAQYKDEARMQLATEGIPQ----DGFSFSDAMNNS 119 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARPTASVMI 177 T + + ++ EI T+++I G+ A+V+IV+PD +F TA+VM+ Sbjct: 120 LATTDQERREKYIYFVQNEIQNTLKTIDGVQDAKVNIVVPDQSNFVLSNSDNSSTAAVML 179 Query: 178 RAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIV 234 + + I + V+ +V L VT++D GK+L N+ + ++ Sbjct: 180 QLKPGVTLTNQQINGITNFVSKSVQGLSPDKVTIIDGNGKVLVAQNDSSLDGASSQYALQ 239 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLS 291 +Q++++ NI L G N LN D Q ++ + P ++ + RS + Sbjct: 240 MKVQNDLQNNIQSLLEQVFGPGNVIVRASVNLNFDKQVQDKVEWQPVIDNNGIIRSTQTI 299 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 K+ ++ + N P S + K + NYEIN T Sbjct: 300 KEIANGSSN--GAPAGTATNNPPGSTTYTTQNNGNSSYSKTDTTINYEINQIKTTLTSAQ 357 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 K++ +S++VVVN LT + ++ +VS A G + ++++ + Sbjct: 358 GKIQNISLSVVVNNSNLT------------PAMKQQLTDLVSNAAG---GKNVSVSVMGI 402 Query: 412 DFLE---NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 F NQ+ N+G ++ + ++ ALV G R + Sbjct: 403 KFNNDLLNQMKNNGKQSFPYV------WLIILGALVLAGGVFYAM-----KKRSKLAVPS 451 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 AK E I++ +DI H + + Sbjct: 452 AKSEEA------------------------ISMVEPLEDIEVHDERDEKK---------- 477 Query: 529 LRLLHMIEINEERFAKILRKWARSE 553 ++ I+ + A+++R W E Sbjct: 478 KQIEKFIKQKPDIVAQLIRTWLNEE 502 >gi|90415352|ref|ZP_01223286.1| flagellar protein [marine gamma proteobacterium HTCC2207] gi|90332675|gb|EAS47845.1| flagellar protein [marine gamma proteobacterium HTCC2207] Length = 599 Score = 324 bits (830), Expect = 3e-86, Method: Composition-based stats. Identities = 132/551 (23%), Positives = 222/551 (40%), Gaps = 28/551 (5%) Query: 21 RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80 R + A + + + +F+ A ++ P Y +Y L SD AL+ A+ RI + Sbjct: 57 RKAMPAIIAFLSVAVFLIAYSWMQDPVYRTVYPGLSESDRQAAFEALAGADFKARIDSST 116 Query: 81 SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140 + VP S +ARI LAA+GLP + G S + FM+++ V A+E E+A Sbjct: 117 GELKVPDSRYHEARIFLAARGLPQEGTTGGISGLSDEASMTSSQFMEQVRYVSAMEQELA 176 Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS--VYKSAEAIRHLVAAA 198 R+I I+ I +ARVH+ P F + ASV++ EAI H+V+++ Sbjct: 177 RSITQINTIRSARVHLASPKQSVFVRNRTPAKASVVVSPYPGRLVSRSQVEAITHMVSSS 236 Query: 199 VPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVD 256 VP L DV V+D GKLLT + + Q ++ I+ L +G+ Sbjct: 237 VPYLAAEDVVVVDQRGKLLTDANNFASMQLNSAQMEHKQRLEETYRNRIDALLMPVVGMG 296 Query: 257 NFRSAVVAELNMDTQQIREIVYD--PDSKVERSIRLS--KDAQRSETSQPESAV-TVEQN 311 N R+ V +++ ++ YD + RS LS +DA S P + TV N Sbjct: 297 NVRAEVDIQVDYTEEESTYEEYDGNNNGPKARSEVLSLDQDAVSSAEGIPGATTNTVPLN 356 Query: 312 MPHVSDRKVPLPRSLEN--TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369 + + ++ T NYE++ +ER+S+AVV+N+ Sbjct: 357 ATAILNGQLDGSAEDGGLRTSSSTTTRNYEMDRTVRHVKRQGGSVERISVAVVINEPVAQ 416 Query: 370 EVLGRSADQGK--IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVS 427 E A + K + L + +V G + RGD +TI S F F S Sbjct: 417 EGGVNEAGESKGFSELELERFSDLVKGVVGFDGERGDVVTIVSATFETPVPFKS------ 470 Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISS 487 DI VI+ + L ++ F+ L +R + E Sbjct: 471 --DIAWYENGQVISGIKTLGAAIMFLFILLSVVRPVIKAYLPAVDE-NLIDETQVSSKDG 527 Query: 488 AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS------DLRLLHMIEINEER 541 + M + S +DI + + +S I++ + + + ++ + R Sbjct: 528 ELNDEEMRLIEMRDGESLEDIKAKLKPKKSTISAEMLDTANTYDDKVALVRLLVAEDSGR 587 Query: 542 FAKILRKWARS 552 A +L+K R Sbjct: 588 VANVLKKMIRP 598 >gi|83815862|ref|YP_446715.1| flagellar M-ring protein FliF [Salinibacter ruber DSM 13855] gi|83757256|gb|ABC45369.1| flagellar M-ring protein FliF [Salinibacter ruber DSM 13855] Length = 532 Score = 323 bits (829), Expect = 4e-86, Method: Composition-based stats. Identities = 113/562 (20%), Positives = 220/562 (39%), Gaps = 49/562 (8%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L ++ QF L + + L + + I L + ++ + P Y L+ LE NR+ Sbjct: 5 LARIQQFLGR---LSTGQQVGLGLLAVGTIALLVGTAYWSSQPDYALLFGDLEPEAANRV 61 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L E + + + GS++ VP + + + R+ ++ G +GYELFD+ + G+T Sbjct: 62 VSRLKEEGTPYELRNQGSAVYVPRASMHELRLQFSSDG-TIDDGQTGYELFDQ-GTLGMT 119 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 FMQ++ RALEGE+A+T+ SI + ARVH+V P+ F +ASV++ S Sbjct: 120 DFMQKLNSKRALEGELAQTVSSIGQVEGARVHLVEPEDDPFEAQQVEASASVVLSLTGGS 179 Query: 184 VYK-SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER---NILGKSLSIVQAIQH 239 + + + + LVA AV L V V+D G +L+ + + + ++++ Sbjct: 180 LSQAQVQGVTQLVAGAVEKLSPSQVKVIDQDGNMLSDPNAADENVQMTSTQIDMQRSVEE 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 ++ L +G DN V EL+ D + + DP+S S ++ Sbjct: 240 QLMKQGQSMLREVVGPDNAVVRVSTELDFDRTVTEKNLVDPESATVVSEERMREE----- 294 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 E + N+E++ + + + RL++ Sbjct: 295 -----------------------GGGDEAGNSNSVVRNFEVSRTTKRSEKSVGDVSRLTV 331 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 +VVV++ R T G + + +A+I +V A G + RGD TI + Sbjct: 332 SVVVDQERTTGPDGEPTYEPRSQEEIAKIESLVKNAVGFDEERGDRFTIQQTRLDTDAGP 391 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG--EVGGK 477 + R + + + LV ++ ++ L + + + Sbjct: 392 AGPVAGDGGGETPMRLY---LRYGLILVAIGAAVWVARSLVQALTATPEEQPTPLQADES 448 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR------L 531 + AV G P + ++ ++++ + + R + Sbjct: 449 RQVEGRTADGAVEEGDGP-AALQETEEEEESLVKDDMYTNKLSDEAKARLEARSEMFEEI 507 Query: 532 LHMIEINEERFAKILRKWARSE 553 +E N E+ A ++R W + Sbjct: 508 QDQVEENPEQTADLIRSWLVED 529 >gi|294508650|ref|YP_003572709.1| flagellar M-ring protein [Salinibacter ruber M8] gi|294344979|emb|CBH25757.1| Flagellar M-ring protein [Salinibacter ruber M8] Length = 532 Score = 323 bits (829), Expect = 4e-86, Method: Composition-based stats. Identities = 113/562 (20%), Positives = 220/562 (39%), Gaps = 49/562 (8%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L ++ QF L + + L + + I L + ++ + P Y L+ LE NR+ Sbjct: 5 LARIQQFLGR---LSTGQQVGLGLLAVGTIALLVGTAYWSSQPDYALLFGDLEPEAANRV 61 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L E + + + GS++ VP + + + R+ ++ G +GYELFD+ + G+T Sbjct: 62 VSRLKEEGTPYELRNQGSAVYVPRASMHELRLQFSSDG-TIDDGQTGYELFDQ-GTLGMT 119 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 FMQ++ RALEGE+A+T+ SI + ARVH+V P+ F +ASV++ S Sbjct: 120 DFMQKLNSKRALEGELAQTVSSIGQVEGARVHLVEPEDDPFEAQQVEASASVVLSLTGGS 179 Query: 184 VYK-SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER---NILGKSLSIVQAIQH 239 + + + + LVA AV L V V+D G +L+ + + + ++++ Sbjct: 180 LSQAQVQGVTQLVAGAVEKLSPSQVKVIDQDGNMLSDPNAADENVQMTSTQIDMQRSVEE 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 ++ L +G DN V EL+ D + + DP+S S ++ Sbjct: 240 QLMKQGQSMLREVVGPDNAVVRVSTELDFDRTVTEKNLVDPESATVVSEERMREE----- 294 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 E + N+E++ + + + RL++ Sbjct: 295 -----------------------GGGDEAGNSNSVVRNFEVSRTTKRSEKSVGDVSRLTV 331 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 +VVV++ R T G + + +A+I +V A G + RGD TI + Sbjct: 332 SVVVDQERTTGPDGEPTYEPRSQEEIAKIESLVKNAVGFDEERGDRFTIQQTRLDTDAGP 391 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG--EVGGK 477 + R + + + LV ++ ++ L + + + Sbjct: 392 AGPVAGDGGGETPMRLY---LRYGLILVAIGAAVWVARSLVQALTATPEEQPTPLQADES 448 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR------L 531 + AV G P + ++ ++++ + + R + Sbjct: 449 RQVEGRTADGAVEEGDGP-AALQETEEEEESLVKDDIYTNKLSDEAKARLEARSEMFEEI 507 Query: 532 LHMIEINEERFAKILRKWARSE 553 +E N E+ A ++R W + Sbjct: 508 QDQVEENPEQTADLIRSWLVED 529 >gi|114562360|ref|YP_749873.1| flagellar MS-ring protein [Shewanella frigidimarina NCIMB 400] gi|114333653|gb|ABI71035.1| flagellar M-ring protein FliF [Shewanella frigidimarina NCIMB 400] Length = 558 Score = 323 bits (829), Expect = 4e-86, Method: Composition-based stats. Identities = 104/557 (18%), Positives = 221/557 (39%), Gaps = 24/557 (4%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + R +I+ + + + L + + P Y L K+E +++ + Sbjct: 15 ENKSGLLGGVGGADMMRQVIMILALAICLALAVFVMMWAQEPDYRPL-GKMETAEMILVL 73 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L + ID++I+ + + VP + ++ L+ G+ SS+ + Y ++ + FG++ Sbjct: 74 DVLDKNQIDYQINVD--VVKVPEDKYQEVKLLLSRAGVQSSTQANDY--LNQDSGFGVSQ 129 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 M++ ++ E +AR I+ + I A+V + +P F + ++P+A+V++ + Sbjct: 130 RMEQARLKQSQEQNLARAIEELKSISRAKVILALPKENVFARNASKPSATVVVNVRRGGL 189 Query: 185 -YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEI 241 + +AI +V +AV L+ VTV DS G+LL + + + + +VQ + E Sbjct: 190 GQEEIDAIVDIVGSAVQGLEPARVTVTDSNGRLLNSGSQDGASSRARREQELVQQQEAEY 249 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 I L LG +NF S V +N + + PD RS + + + S Sbjct: 250 RKKIESILMPILGPENFTSQVDVNMNFTAVEQTAKRFSPDLPAIRSEMIIERNSSGQNS- 308 Query: 302 PESAVTVEQNMPHVSD-----RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 N P + ++ KE NYE++T T + R Sbjct: 309 -GGIPGALSNQPPMESDIPQVAGEATASTMSGDSSKEATRNYELDTTISHTRQQIGVVRR 367 Query: 357 LSIAVVVN-KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 +S++V +N K + G A + + L I +++ A G +++RGD + + ++ F++ Sbjct: 368 VSVSVAINFKPGQVDENGVVARVPRTEQELTNIRRLLEGAVGFSTQRGDALEVVTVPFMD 427 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + + R + A+V LV L V L++L N + + Sbjct: 428 QLIEALPEPDMWEEPWFWRAIKLALGAIVILVLILAV---VRPMLKKLTNPNG-----IN 479 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 + P + + + L++ + N + + ++ Sbjct: 480 MPDDIRPGHELAEIEDQYAADTLGMLNTKEAEYSYADDGSIQIPNLHKDDDMIKAIRALV 539 Query: 536 EINEERFAKILRKWARS 552 E ++++ W + Sbjct: 540 ANEPELSTQVIKNWLQD 556 >gi|295319980|gb|ADG00358.1| fliF; flagellar M-ring protein FliF [Clostridium botulinum F str. 230613] Length = 526 Score = 323 bits (829), Expect = 4e-86, Method: Composition-based stats. Identities = 105/565 (18%), Positives = 226/565 (40%), Gaps = 54/565 (9%) Query: 4 LDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 +++L +FFK T + + + + + L I +A + Y L+ ++ +D Sbjct: 1 MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + L + ++ ++ G++I VP V + R+ + ++ +P ++ + G+E+ DK Sbjct: 61 SGTVLQKLKDKKVEAKVE--GNNILVPKDKVDELRMQMLSE-VPLTNGSQGFEILDKSQ- 116 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 FG T +I RAL+GE+ RTI+ + +RVH+V+P+ +F K ASV + Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNSRVHLVLPEETAFVKETQPGRASVTLNL 176 Query: 180 INPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--------EMERNILGK 229 + ++I LV+ +V N+ +V V+D+ LLT N E K Sbjct: 177 KQGQTLSKEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLTKNLFDASGSLEEATTSAEK 236 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 + + + +++ + L A G D + + +L+ D + + YDP + V S Sbjct: 237 QQQLQKNYEKDLQNRLVSMLEAVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNVVV-SEH 295 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 K+ ++ + +V N ++ +R E + + E NYEI+ + Sbjct: 296 SIKEKNQNNAGGNNTNGSVVDN--NMVNRTTQNNNGSETSSRDENTKNYEISKTQQDSIK 353 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 ++RL+ ++V++ + + + + +A G + +RGDTI + Sbjct: 354 APGSVKRLTASIVLDGN-------------IDEETRSAVRNLAVSAIGYDEKRGDTINVE 400 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 + F + + L LL+ + +++ + ++ Sbjct: 401 GLPFDTAAKDKVKKDLEDMQKSEKTKERIKLFTAIGLGVLLLLGAIIFFIIKKRNEDEEY 460 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 ++ E G ++ + P +D QD +H N Sbjct: 461 EEDEEGLDILIDDNDSETKQVPKFKP-----IDLETQDEKTHVENE-------------- 501 Query: 530 RLLHMIEINEERFAKILRKWARSEI 554 + + ++ A+I++ W + Sbjct: 502 -IRKYAKDKPDQVAEIIKSWLAEDE 525 >gi|157376198|ref|YP_001474798.1| flagellar MS-ring protein [Shewanella sediminis HAW-EB3] gi|157318572|gb|ABV37670.1| flagellar M-ring protein FliF [Shewanella sediminis HAW-EB3] Length = 569 Score = 323 bits (828), Expect = 5e-86, Method: Composition-based stats. Identities = 103/536 (19%), Positives = 218/536 (40%), Gaps = 36/536 (6%) Query: 37 MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIH 96 + + P Y L K+ ++ ++ L + I + I + + VP ++ Sbjct: 53 VFVMLWAQEPEYRPL-GKMSTQEMIQVLDVLDKNKIKYEIDVD--VVKVPEDKYQDVKLM 109 Query: 97 LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHI 156 L +G+ S++S+S Y + + FG++ M++ + E +AR I+ + + A+V + Sbjct: 110 LTREGVDSAASSSDY--LSQDSGFGVSQRMEQARLKHSQELNLARAIEELRNVTRAKVIL 167 Query: 157 VMPDMGSFRKIGARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 +P F + ++P+A+V+I A S+ + ++I +VA+AV L+ VTV DS G+ Sbjct: 168 AIPKENVFARNRSKPSATVVINARRGSLGQEEVDSIVDIVASAVQGLEPTRVTVTDSNGR 227 Query: 216 LLTANEME--RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI 273 LL + + + +VQ + E + L LG +NF S V ++ + + Sbjct: 228 LLNSGSQDAVSARARREQELVQQKESEYRNKVESILMPILGPENFTSQVDVSMDFTSVEQ 287 Query: 274 REIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV---------SDRKVPLPR 324 Y+PD RS ++ T+ N P + +++ Sbjct: 288 TAKRYNPDLPALRSEMTVENNSNGATT--GGIPGALSNQPPMEANIPQEALNNQADAESN 345 Query: 325 SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN-KGRLTEVLGRSADQGKIDS 383 S + +E N+E++T T + R+S++V V+ K G+ + + + Sbjct: 346 SSSGSSHREATRNFELDTTISHTRQQIGVVRRVSVSVAVDFKSGSAGEDGQVSRVPRTEQ 405 Query: 384 YLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINAL 443 L+ I +++ A G ++RGD I + ++ F++ + + ++ R + + Sbjct: 406 ELSNIRRLLEGAVGFTTQRGDIIEVVTVPFMDQLIEDVPAPELWEQPWFWRAIKLALGGI 465 Query: 444 VFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG--GKSILSPPPISSAVTTGLM--PNDNI 499 V LV L V L+RL D K + G + ++ T G++ P Sbjct: 466 VILVLILAV---VRPMLKRLIYPDSVKLPDEPRFGDELAEIEDQYASDTLGMLNRPEAEY 522 Query: 500 ALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + I + + ++ E ++++ W + + Sbjct: 523 SYADDGSILIPDLHKDDDMIKA---------IRALVANEPELSTQVVKGWLQDNEQ 569 >gi|168183269|ref|ZP_02617933.1| flagellar M-ring protein FliF [Clostridium botulinum Bf] gi|237796102|ref|YP_002863654.1| flagellar MS-ring protein [Clostridium botulinum Ba4 str. 657] gi|182673721|gb|EDT85682.1| flagellar M-ring protein FliF [Clostridium botulinum Bf] gi|229262258|gb|ACQ53291.1| flagellar M-ring protein FliF [Clostridium botulinum Ba4 str. 657] Length = 526 Score = 323 bits (828), Expect = 5e-86, Method: Composition-based stats. Identities = 105/565 (18%), Positives = 224/565 (39%), Gaps = 54/565 (9%) Query: 4 LDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 +++L +FFK T + + + + + L I +A + Y L+ ++ +D Sbjct: 1 MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + L + ++ ++ G++I VP V + R+ + ++ +P ++ + G+E+ DK Sbjct: 61 SGTVLQKLKDKKVEAKVE--GNNILVPKDQVDELRMQMLSE-VPLTNGSQGFEILDKSQ- 116 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 FG T +I RAL+GE+ RTI+ + RVH+V+P+ +F K ASV + Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNTRVHLVLPEETAFVKETQPGRASVTLNL 176 Query: 180 INPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--------EMERNILGK 229 + ++I LV+ +V N+ +V V+D+ LLT N E K Sbjct: 177 KQGQNLSKEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLTKNLFDASGSLEEATTSAEK 236 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 + + + +++ + L A G D + + +L+ D + + YDP + V S Sbjct: 237 QQQLQKNYEKDLQNRLVSMLEAVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNVVV-SEH 295 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 K+ ++ + +V N ++ +R E + + E NYEI+ + Sbjct: 296 SIKEKNQNNAGGNNTNGSVVDN--NMVNRTTQNNNGSETSSRDENTKNYEISKTQQDSIK 353 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 ++RL+ ++V++ + + + + +A G + +RGDTI + Sbjct: 354 APGSVKRLTASIVLDGN-------------IDEETRSAVRNLAVSAIGYDEKRGDTINVE 400 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 + F + + L LL+ + +++ + ++ Sbjct: 401 GLPFDTAAKDKVKKDLEDMQKTEKTKERIKLFTAIGLGVLLLLGAIIFFIIKKRNEDEEY 460 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 + E G ++ + P +D QD +H N Sbjct: 461 EDDEEGLDILIDDNDSETKQVPKFKP-----IDLETQDEKTHVENE-------------- 501 Query: 530 RLLHMIEINEERFAKILRKWARSEI 554 + + ++ A+I++ W + Sbjct: 502 -IRKYAKDKPDQVAEIIKSWLAEDE 525 >gi|254299704|ref|ZP_04967153.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 406e] gi|157809299|gb|EDO86469.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 406e] Length = 532 Score = 323 bits (828), Expect = 5e-86, Method: Composition-based stats. Identities = 112/513 (21%), Positives = 217/513 (42%), Gaps = 22/513 (4%) Query: 45 SPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPS 104 +Y L+ E ++ + L I +RI + + V S V +AR+ LAA+G+ + Sbjct: 33 QANYKPLFGAREPVQLDDVVSTLDAQRIPYRIHPDTGQVLVARSDVARARMTLAARGV-T 91 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + G E D+ + G + F+Q++ R LE E+A++I ++ + ARVH+ + SF Sbjct: 92 AKAAPGLEQIDQDDPLGTSQFVQDVRFRRGLESELAQSIATLEPVERARVHLSIAKSSSF 151 Query: 165 RKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE 221 + +A+ ++ + P + A+ +LVA +VPNL V+V+D G L+A Sbjct: 152 VMMDGDKSAASVVLTLKPGRRLAKEQIAAVINLVAGSVPNLAPAKVSVVDQHGAFLSARV 211 Query: 222 MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD 281 L + I + ++ N+ LA LG+ NFR +V A +N D + + Sbjct: 212 DLDGDLTGTDEIAARFREDVTRNVEDLLAPSLGLGNFRVSVTALVNNDRVEETREQFG-- 269 Query: 282 SKVERSIRLSKDAQRSETSQPESAVTVEQNMPH-VSDRKVPLPRSLENTDKKEEQSNYEI 340 + ++ +A R+E ++ A+ V ++ + D P++ T + + Sbjct: 270 ----EAPKVMNEATRNEQNRDRVALGVPGSLSNRPVDVPASEPQADGGTQRAATTRQFAY 325 Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400 + +L++LS+AVV+N + + + L I++I+ + GI+ Sbjct: 326 DRNITQIKRGRGQLKKLSVAVVLN-----NAVSPAKGKPWSPEQLRRIDEILRSGLGIDK 380 Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460 +RGD + ++S+DF + D L + + AL L G L + L L Sbjct: 381 QRGDQLIVSSLDFA---APAAAEPWWKERDTLEQGGWYLTYALAALFGYLALARPMLRML 437 Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520 ++ S L P A +D ++ + + Sbjct: 438 QQWVQHRYGAPAAAASASRLPAPEGGHAQAALPAADDARPPLAAMLPLLDDVELPPADSG 497 Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 V L + E ER A+++++W R++ Sbjct: 498 VEVL---IDHLRSLSEKEPERVAEVVKQWIRND 527 >gi|168180913|ref|ZP_02615577.1| flagellar M-ring protein fliF [Clostridium botulinum NCTC 2916] gi|182668331|gb|EDT80310.1| flagellar M-ring protein fliF [Clostridium botulinum NCTC 2916] Length = 526 Score = 323 bits (828), Expect = 5e-86, Method: Composition-based stats. Identities = 108/570 (18%), Positives = 225/570 (39%), Gaps = 64/570 (11%) Query: 4 LDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 +++L +FFK T + + + + + L I +A + Y L+ ++ +D Sbjct: 1 MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + L + ++ ++ G++I VP V + R+ + ++ +P ++ + G+E+ DK Sbjct: 61 SGTVLQKLKDKKVEAKVE--GNNILVPKDKVDELRMQMLSE-VPLTNGSQGFEILDKSQ- 116 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 FG T +I RAL+GE+ RTI+ + RVH+V+P+ +F K ASV + Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNTRVHLVLPEETAFVKETQPGRASVTLNL 176 Query: 180 INPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--------EMERNILGK 229 + ++I LV+ +V N+ +V V+D+ LLT N E K Sbjct: 177 KQGQTLSKEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLTKNLFDASGSLEEATTSAEK 236 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 + + + +++ + L A G D + + +L+ D + + YDP + V S Sbjct: 237 QQQLQKNYEKDLQNRLVSMLEAVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNVVV-SEH 295 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 K+ ++ + +V N ++ +R E + + E NYEI+ + Sbjct: 296 SIKEKNQNNAGGNNTNGSVVDN--NMVNRTTQNNNGSETSSRDENTKNYEISKTQQDSIK 353 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 ++RL+ ++V++ + + + + +A G + +RGDTI + Sbjct: 354 APGSVKRLTASIVLDGN-------------IDEETRSAVRNLAVSAIGYDEKRGDTINVE 400 Query: 410 SMDFLENQLFN-----SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 + F + + F + ++ L+G ++ + Sbjct: 401 GLPFDTAAKDKVKKDLEDMQKAGKTKERIKLFTAIGLGVLLLLGAIIFFIIKKR------ 454 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 N D+ + + G IL S +D QD +H N Sbjct: 455 NEDEEYEEDEEGLDILIDDNDSETKQVPKFKP----IDLETQDEKTHVENE--------- 501 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEI 554 + + ++ A+I++ W + Sbjct: 502 ------IRKYAKDKPDQVAEIIKSWLAEDE 525 >gi|224438214|ref|ZP_03659149.1| flagellar MS-ring protein [Helicobacter cinaedi CCUG 18818] gi|313144660|ref|ZP_07806853.1| flagellar basal body M-ring protein FliF [Helicobacter cinaedi CCUG 18818] gi|313129691|gb|EFR47308.1| flagellar basal body M-ring protein FliF [Helicobacter cinaedi CCUG 18818] Length = 569 Score = 323 bits (827), Expect = 6e-86, Method: Composition-based stats. Identities = 121/574 (21%), Positives = 230/574 (40%), Gaps = 30/574 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNS----PHYDNLYVKLEVS 58 I +Q+ + + RI+IL + +++ L F V + +YD L+ L Sbjct: 6 IFEQISKVLNKLNK--KQRIIILTTFVVIIAFLTYLVLFRVETKNEYENYDVLFSNLNPE 63 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 D I L + I ++I + + I VP V + RI L + GLP +S N G+++ + N Sbjct: 64 DSAAILQRLQQDKIPYKIPQD-NIILVPKDKVYEQRISLGSLGLPKTSKNVGFDILLENN 122 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178 G T F Q++ + A + E+ARTI+S+ I A V+I MP F + G P+ASV I Sbjct: 123 -VGETPFTQDMKYLVAKQNELARTIESLKPIEKAIVNISMPKESLFVQGGHPPSASVKIT 181 Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIV 234 + + I+HLVAAAV L +V +++ G+LL ++ +++ LGK + Sbjct: 182 VQDNMFLSIEQVVGIKHLVAAAVERLTPQNVKIINQDGELLGEDDEATQQSALGKQAAFQ 241 Query: 235 QAIQHEIEMNINKALAAFLGV---DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + Q E + + FL D + V + + ++ V+ + V + Sbjct: 242 RKYQQNAENAMEAKIVKFLKPSVGDGVEAQVTMDFDFSVRKSVAEVFGQNPVVRGTREYE 301 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 K+ + Q V N+ V K +E + E N EI+ Sbjct: 302 KERKGFRPPQIGGVPGVVSNIGPVQGLKD--DEMMEWEKESEVVINNEIDKTVSDIKEHF 359 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQ-----GKIDSYLAEINKIVSAATGINSRRGDTI 406 L+R+S +V+++ G E +G + + + + + V A G N RGD + Sbjct: 360 GVLKRVSASVMID-GTYKEAVGEDGEPRLEYIPRSQEEMDKFLEGVKKAIGYNEARGDQV 418 Query: 407 TITSMDFLENQLFNSGTVQVS-FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465 + +M F + L F D + R+ + L +++ +++ +++ Sbjct: 419 EVINMQFRNSLLDYRPKDSWELFSDKVERYLGPFMPLLKYVIVAVIIFIF----YKKIVA 474 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 + EV + + N L +D S +S + Sbjct: 475 PFAERMLEVQEEEDDDIESLMQIDDGEDDVNKFSELRKRVEDQLGLSSGFDE--DSIKYE 532 Query: 526 QSDLRLLHMIEINEERFAKILRKWARSEIEDRYT 559 ++ ++I + + + + E++ Sbjct: 533 VLLEKMRNVIAERPQEIGALFQTLIKDELDITEG 566 >gi|322806993|emb|CBZ04563.1| flagellar M-ring protein FliF [Clostridium botulinum H04402 065] Length = 526 Score = 323 bits (827), Expect = 7e-86, Method: Composition-based stats. Identities = 105/565 (18%), Positives = 225/565 (39%), Gaps = 54/565 (9%) Query: 4 LDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 +++L +FFK T + + + + + L I +A + Y L+ ++ +D Sbjct: 1 MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + L + ++ ++ G++I VP V + R+ + ++ +P ++ + G+E+ DK Sbjct: 61 SGTVLQKLKDKKVEAKVE--GNNILVPKDKVDELRMQMLSE-VPLTNGSQGFEILDKSQ- 116 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 FG T +I RAL+GE+ RTI+ + RVH+V+P+ +F K ASV + Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNTRVHLVLPEETAFVKETQPGRASVTLNL 176 Query: 180 INPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--------EMERNILGK 229 + ++I LV+ +V N+ +V V+D+ LLT N E K Sbjct: 177 KQGQTLSKEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLTKNLFDASGSLEEATTSAEK 236 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 + + + +++ + L A G D + + +L+ D + + YDP + V S Sbjct: 237 QQQLQKNYEKDLQNRLVSMLEAVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNVVV-SEH 295 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 K+ ++ + +V N ++ +R E + + E NYEI+ + Sbjct: 296 SIKEKNQNNAGGNNTNGSVVDN--NMVNRTTQNNNGSETSSRDENTKNYEISKTQQDSIK 353 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 ++RL+ ++V++ + + + + +A G + +RGDTI + Sbjct: 354 APGSVKRLTASIVLDGN-------------IDEETRSAVRNLAVSAIGYDEKRGDTINVE 400 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 + F + + L LL+ + +++ + ++ Sbjct: 401 GLPFDTAAKDKVKKDLEDMQKAEKTKERIKLFTAIGLGVLLLLGAIIFFIIKKRNEDEEY 460 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 ++ E G ++ + P +D QD +H N Sbjct: 461 EEDEEGLDILIDDNDSETKQVPKFKP-----IDLETQDEKTHVENE-------------- 501 Query: 530 RLLHMIEINEERFAKILRKWARSEI 554 + + ++ A+I++ W + Sbjct: 502 -IRKYAKDKPDQVAEIIKSWLAEDE 525 >gi|170760264|ref|YP_001787983.1| flagellar MS-ring protein [Clostridium botulinum A3 str. Loch Maree] gi|169407253|gb|ACA55664.1| flagellar M-ring protein FliF [Clostridium botulinum A3 str. Loch Maree] Length = 526 Score = 323 bits (827), Expect = 7e-86, Method: Composition-based stats. Identities = 104/565 (18%), Positives = 226/565 (40%), Gaps = 54/565 (9%) Query: 4 LDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 +++L +FFK T + + + + + L I +A + Y L+ ++ +D Sbjct: 1 MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + L + ++ ++ G++I VP V + R+ + ++ +P ++ + G+E+ DK Sbjct: 61 SGTVLQKLKDKKVEAKVE--GNNILVPKDKVDELRMQMLSE-VPLTNGSQGFEILDKSQ- 116 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 FG T +I RAL+GE+ RTI+ + RVH+V+P+ +F K ASV + Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNTRVHLVLPEETAFVKETQPGRASVTLNL 176 Query: 180 INPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--------EMERNILGK 229 + ++I LV+ +V N+ +V V+D+ LLT N E K Sbjct: 177 KQGQTLSKEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLTKNLFDASGSLEEATTSAEK 236 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 + + + +++ + L + G D + + +L+ D + + YDP + V S Sbjct: 237 QQQLQKNYEKDLQNRLVSMLESVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNVVV-SEH 295 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 K+ ++ + +V N ++ +R E + + E NYEI+ + Sbjct: 296 SIKEKNQNNAGGNNTNGSVVDN--NMVNRTTQNNNGSETSSRDENTKNYEISKTQQDSIK 353 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 ++RL+ ++V++ + + + + +A G + +RGDTI++ Sbjct: 354 APGSVKRLTASIVLDGN-------------IDEETRSAVRNLAVSAIGYDEKRGDTISVE 400 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 + F + + L LL+ + +++ + ++ Sbjct: 401 GLPFDTAAKDKVKKDLEDMQKSEKTKERIKLFTAIGLGVLLLLGAIIFFIIKKRNEDEEY 460 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 ++ E G ++ + P +D QD +H N Sbjct: 461 EEDEEGLDILIDDNDSETKQVPKFKP-----IDLETQDEKTHVENE-------------- 501 Query: 530 RLLHMIEINEERFAKILRKWARSEI 554 + + ++ A+I++ W + Sbjct: 502 -IRKYAKDKPDQVAEIIKSWLAEDE 525 >gi|307721566|ref|YP_003892706.1| flagellar M-ring protein FliF [Sulfurimonas autotrophica DSM 16294] gi|306979659|gb|ADN09694.1| flagellar M-ring protein FliF [Sulfurimonas autotrophica DSM 16294] Length = 569 Score = 322 bits (826), Expect = 7e-86, Method: Composition-based stats. Identities = 132/569 (23%), Positives = 241/569 (42%), Gaps = 28/569 (4%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH---YDNLYVKLEVSD 59 + QL + T + +I+I A+V+ + L F Y+ L+ L +D Sbjct: 6 LFSQLSVLYAKLTK--QQKIIIAAAVVGIVAFLIFLVVFTAKKTSGSAYEVLFDALTPAD 63 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 ++ L + NI ++I N + I VP +V K RI +A+ G+P +S G+ELFDK Sbjct: 64 AAKVVEQLEKDNITYKIEAN-NVIKVPRDVVYKERISIASLGIPKNSG-VGFELFDKQE- 120 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 FG TSF Q+I +RALEGE++RTI ++S + A V + +P F PTASVM++ Sbjct: 121 FGATSFDQKIKHLRALEGELSRTITALSPVEKATVSLALPKDTLFVSKQVDPTASVMVQL 180 Query: 180 INPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLSIV 234 + + K I++LV+AAVP L +V ++DS G L N+ + Sbjct: 181 ADGRMLTPKQIRGIKNLVSAAVPKLKSSNVMLIDSDGVTLGDNDEMAQMSELSVVQQKYK 240 Query: 235 QAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293 + + + I +A F+ G D + V E + + YDP++ V RS +++++ Sbjct: 241 IKEEKKRQEKIIDVIAPFVGGKDKVVAQVTIEFDFSQKNSTSEKYDPEN-VVRSEQVNEE 299 Query: 294 AQRSETSQPESAVTVEQNMPHVSD-RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 + E S P+ V + ++ + + +++E K +NYE+ T Sbjct: 300 KR--EGSSPKEVGGVPGTVSNIGPVQGLASNKTVEKYSKNSGTTNYEVGKTVSTTKSQFA 357 Query: 353 KLERLSIAVVVNKGRLT--EVLGRSADQ----GKIDSYLAEINKIVSAATGINSRRGDTI 406 +++R++ AVVV+ T + G ++ D+ + + + S + GI+ RGD I Sbjct: 358 RIKRITAAVVVDGKYKTKVDKDGNPTEEMEYVPLDDADINALTSLASRSIGIDPNRGDQI 417 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 ++ ++ F + + A +L +L+ L + + Sbjct: 418 SVQNLQFERALTNKGVQGVNQAIIFSETYLAPFSGLFKYLFVLILLFILYKKVIAPFADK 477 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 E + +++P + + +D S N + + Sbjct: 478 MLEISKE--DEELVAPSLEIEEEEGEDLVEKVQTMRKKVEDQLGMSSNFNE--DDLKHEV 533 Query: 527 SDLRLLHMIEINEERFAKILRKWARSEIE 555 ++ M E E A +L E E Sbjct: 534 ILEKVRTMAEDTPEEVASLLEALLSEESE 562 >gi|255321871|ref|ZP_05363021.1| flagellar M-ring protein FliF [Campylobacter showae RM3277] gi|255300975|gb|EET80242.1| flagellar M-ring protein FliF [Campylobacter showae RM3277] Length = 564 Score = 322 bits (826), Expect = 9e-86, Method: Composition-based stats. Identities = 123/568 (21%), Positives = 227/568 (39%), Gaps = 39/568 (6%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH----YDNLYVKLE 56 M + Q + +L + L+ A +++ + + +S Y L+ Sbjct: 1 MDFKTAIQQIGQVYHNLSLRQRLVAAGSVVLVVGFLVFLSIHKSSNENYDGYSVLFENTS 60 Query: 57 VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 +D I L + + ++I + G +I VP+S V + RI +A+ G+ G+E+FDK Sbjct: 61 AADSALIIQQLEKDKVKYKILNEG-TILVPNSDVYRERISIASLGILKDGK-VGFEIFDK 118 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 FG T Q++ RALEGE+ARTI+S++ I A V I +P F + P+AS++ Sbjct: 119 QE-FGATDAEQKVKFQRALEGELARTIESLAPINKAIVRIAIPKETIFTERATPPSASIV 177 Query: 177 IRAINPSV--YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLS 232 + + K I++LVAAAV NL V ++ G L + E + + + + Sbjct: 178 LNLKDGQSLNLKQITGIKNLVAAAVANLKPEQVKIVSQDGVPLGEEDGEYDSDQITQQIR 237 Query: 233 IVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + +H +E I L+ + G D + V + + + + +DP+S + Sbjct: 238 YKRDAEHNLEEKIINVLSPIVGGSDKVVAKVTIDFDFARKDSQSETFDPNSVARSEQNVE 297 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + Q S+ ++ + N+ V + + E K +NYEI+ K Sbjct: 298 EKRQGSKEAEVQGVPGAVSNIGPVEGLQDG--KMKELYSKSSSTTNYEISKKVERVKDQF 355 Query: 352 YKLERLSIAVVVNKGRLT------EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 K+ RLS AVVV+ A LA I+ ++ + G + RGD Sbjct: 356 AKINRLSAAVVVDGKYENKKDEKGNPTSEIAYVPLDKEQLARIDALIRQSIGFDQNRGDE 415 Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465 +T+++ +F + SF ++ + + L +L +L+ + Sbjct: 416 VTVSNFEFQRQDGQTPASKVQSFFEL---YVVPFLPILKYLFVAILLYVFYKKVITPFMT 472 Query: 466 --IDDAKKGEVG-----------GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS 512 ++D K+ E+ ++ V L DN D D+ Sbjct: 473 KMLEDVKEEEIDLSENEVQLEDSEDTLEKFQAARKKVEEQLGIGDNFNEDDLRYDVLLEK 532 Query: 513 RNLQSRINSYVSKQSDLRLLHMIEINEE 540 L + S + L MI+ + + Sbjct: 533 MKLVVQDRSEEIA---VLLQDMIKNDSD 557 >gi|148380620|ref|YP_001255161.1| flagellar MS-ring protein [Clostridium botulinum A str. ATCC 3502] gi|153933327|ref|YP_001384906.1| flagellar MS-ring protein [Clostridium botulinum A str. ATCC 19397] gi|153935162|ref|YP_001388375.1| flagellar MS-ring protein [Clostridium botulinum A str. Hall] gi|148290104|emb|CAL84223.1| flagellar M-ring protein [Clostridium botulinum A str. ATCC 3502] gi|152929371|gb|ABS34871.1| flagellar M-ring protein FliF [Clostridium botulinum A str. ATCC 19397] gi|152931076|gb|ABS36575.1| flagellar M-ring protein FliF [Clostridium botulinum A str. Hall] Length = 526 Score = 322 bits (825), Expect = 1e-85, Method: Composition-based stats. Identities = 103/565 (18%), Positives = 221/565 (39%), Gaps = 54/565 (9%) Query: 4 LDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 +++L +FFK T + + + + + L I +A + Y L+ ++ +D Sbjct: 1 MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + L + ++ ++ G++I VP V + R+ + ++ +P ++ + G+E+ DK Sbjct: 61 SGTVLQKLKDKKVEAKVE--GNNILVPKDKVDELRMQMLSE-VPLTNGSQGFEILDKSQ- 116 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 FG T +I RAL+GE+ RTI+ + RVH+V+P+ +F K ASV + Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNTRVHLVLPEETAFVKETQPGRASVTLNL 176 Query: 180 INPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--------EMERNILGK 229 + ++I LV+ +V N+ +V V+D+ LLT N E K Sbjct: 177 KQGQTLSKEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLTKNLFDASGSLEEATTSAEK 236 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 + + + +++ + L A G D + + +L+ D + + YDP + V S Sbjct: 237 QQQLQKNYEKDLQNRLVSMLEAVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNVVV-SEH 295 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 K+ ++ + +V N ++ +R E + + E NYEI+ + Sbjct: 296 SIKEKNQNNAGGNNTNGSVVDN--NMVNRTTQNNNGSETSSRDENTKNYEISKTQQDSIK 353 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 ++RL+ ++V++ + + + + +A G + +RGDTI + Sbjct: 354 APGSVKRLTASIVLDGN-------------IDEETRSAVRNLAVSAIGYDEKRGDTINVE 400 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 + F + + L LL+ + +++ + ++ Sbjct: 401 GLPFDTAAKDKVKKDLEDMQKAEKTKERIKLFTAIGLGVLLLLGAIIFFIIKKRNEDEEY 460 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 ++ E G ++ + P D A D Sbjct: 461 EEDEEGLDILIDDNDSETKQVPKFKPIDLEAQDEKTHVENE------------------- 501 Query: 530 RLLHMIEINEERFAKILRKWARSEI 554 + + ++ A+I++ W + Sbjct: 502 -IRKYAKDKPDQVAEIIKSWLAEDE 525 >gi|167725912|ref|ZP_02409148.1| flagellar MS-ring protein [Burkholderia pseudomallei DM98] gi|167905072|ref|ZP_02492277.1| flagellar MS-ring protein [Burkholderia pseudomallei NCTC 13177] gi|125657201|gb|ABN48689.1| flagella biosynthesis/type III secretory pathway lipoprotein [Burkholderia pseudomallei] Length = 531 Score = 322 bits (825), Expect = 1e-85, Method: Composition-based stats. Identities = 113/513 (22%), Positives = 217/513 (42%), Gaps = 22/513 (4%) Query: 45 SPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPS 104 +Y L+ E ++ + L I +RI + + V S V +AR+ LAA+G+ + Sbjct: 32 QANYKPLFGAREPVQLDDVVSTLDAQRIPYRIHPDTGQVLVARSDVARARMTLAARGV-T 90 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + G E D+ + G + F+Q++ R LE E+A++I ++ + ARVH+ + SF Sbjct: 91 AKAAPGLEQIDQDDPLGTSQFVQDVRFRRGLESELAQSIATLEPVERARVHLSIAKSSSF 150 Query: 165 RKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE 221 + +A+ ++ + P + A+ +LVA +VPNL V+V+D G L+A Sbjct: 151 VMMDGDKSAASVVLTLKPGRRLAKEQIAAVINLVAGSVPNLAPAKVSVVDQHGAFLSARV 210 Query: 222 MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD 281 L + I + ++ N+ LA LG+ NFR +V A +N D + + Sbjct: 211 DLDGDLTGTDEIAARFREDVTRNVEDLLAPSLGLGNFRVSVTALVNNDRVEETREQFG-- 268 Query: 282 SKVERSIRLSKDAQRSETSQPESAVTVEQNMPH-VSDRKVPLPRSLENTDKKEEQSNYEI 340 + ++ +A R+E ++ A+ V ++ + D P++ T + + Sbjct: 269 ----EAPKVMNEATRNEQNRDRVALGVPGSLSNRPVDVPASEPQADGGTQRAATTRQFAY 324 Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400 + +LE+LS+AVV+N + + + L I++I+ + GI+ Sbjct: 325 DRNITQIKRGRGQLEKLSVAVVLN-----NAVSPAKGKPWSPEQLRRIDEILRSGLGIDK 379 Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460 +RGD + ++S+DF + D L + + AL L G L + L L Sbjct: 380 QRGDQLIVSSLDFA---APAAAEPWWKERDTLEQGGWYLTYALAALFGYLALARPMLRML 436 Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520 ++ S L P A +D ++ + + Sbjct: 437 QQWVQHRYGAPAAAASASRLPAPEGGHAQAALPAADDARPPLAAMLPLLDDVELPPADSG 496 Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 V L + E ER A+++++W R++ Sbjct: 497 VEVL---IDHLRSLSEKEPERVAEVVKQWIRND 526 >gi|126442789|ref|YP_001061229.1| flagellar MS-ring protein [Burkholderia pseudomallei 668] gi|134280829|ref|ZP_01767539.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 305] gi|254182909|ref|ZP_04889502.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1655] gi|126222280|gb|ABN85785.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 668] gi|134247851|gb|EBA47935.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 305] gi|184213443|gb|EDU10486.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1655] Length = 532 Score = 322 bits (825), Expect = 1e-85, Method: Composition-based stats. Identities = 113/513 (22%), Positives = 217/513 (42%), Gaps = 22/513 (4%) Query: 45 SPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPS 104 +Y L+ E ++ + L I +RI + + V S V +AR+ LAA+G+ + Sbjct: 33 QANYKPLFGAREPVQLDDVVSTLDAQRIPYRIHPDTGQVLVARSDVARARMTLAARGV-T 91 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + G E D+ + G + F+Q++ R LE E+A++I ++ + ARVH+ + SF Sbjct: 92 AKAAPGLEQIDQDDPLGTSQFVQDVRFRRGLESELAQSIATLEPVERARVHLSIAKSSSF 151 Query: 165 RKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE 221 + +A+ ++ + P + A+ +LVA +VPNL V+V+D G L+A Sbjct: 152 VMMDGDKSAASVVLTLKPGRRLAKEQIAAVINLVAGSVPNLAPAKVSVVDQHGAFLSARV 211 Query: 222 MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD 281 L + I + ++ N+ LA LG+ NFR +V A +N D + + Sbjct: 212 DLDGDLTGTDEIAARFREDVTRNVEDLLAPSLGLGNFRVSVTALVNNDRVEETREQFG-- 269 Query: 282 SKVERSIRLSKDAQRSETSQPESAVTVEQNMPH-VSDRKVPLPRSLENTDKKEEQSNYEI 340 + ++ +A R+E ++ A+ V ++ + D P++ T + + Sbjct: 270 ----EAPKVMNEATRNEQNRDRVALGVPGSLSNRPVDVPASEPQADGGTQRAATTRQFAY 325 Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400 + +LE+LS+AVV+N + + + L I++I+ + GI+ Sbjct: 326 DRNITQIKRGRGQLEKLSVAVVLN-----NAVSPAKGKPWSPEQLRRIDEILRSGLGIDK 380 Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460 +RGD + ++S+DF + D L + + AL L G L + L L Sbjct: 381 QRGDQLIVSSLDFA---APAAAEPWWKERDTLEQGGWYLTYALAALFGYLALARPMLRML 437 Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520 ++ S L P A +D ++ + + Sbjct: 438 QQWVQHRYGAPAAAASASRLPAPEGGHAQAALPAADDARPPLAAMLPLLDDVELPPADSG 497 Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 V L + E ER A+++++W R++ Sbjct: 498 VEVL---IDHLRSLSEKEPERVAEVVKQWIRND 527 >gi|313683040|ref|YP_004060778.1| flagellar m-ring protein flif [Sulfuricurvum kujiense DSM 16994] gi|313155900|gb|ADR34578.1| flagellar M-ring protein FliF [Sulfuricurvum kujiense DSM 16994] Length = 572 Score = 322 bits (825), Expect = 1e-85, Method: Composition-based stats. Identities = 125/575 (21%), Positives = 240/575 (41%), Gaps = 42/575 (7%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNS------PHYDNLYVKLE 56 + QL+ F+ T + +I+ + + I + + + Y L+ +L Sbjct: 6 LFSQLVVFYGKLTQAQK---IIIGTAVAGIIAFLVFLVVYTSEGKKGDNDGYQVLFEQLS 62 Query: 57 VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 D +++ L + I +RI + I VP +V K RI +A+ G+P + G+ELFDK Sbjct: 63 GEDASKVIEQLEKDKIPYRIPRE-NVIEVPKEVVYKERIAIASLGIPKEG-HVGFELFDK 120 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 FG T+F QE+ RALEGE+AR+I S+S + + V + +P F + P+ASVM Sbjct: 121 QE-FGATNFDQEVKFRRALEGELARSIDSLSPVEKSSVSLALPKETLFVEEAVPPSASVM 179 Query: 177 IRAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER---NILGKSL 231 ++ K I+ LVAAAVP L +V ++++ G+ L N+ + Sbjct: 180 VQLYPDRKLTPKQIRGIKKLVAAAVPKLTPENVALINAEGETLGDNDDASAMGELSSIQQ 239 Query: 232 SIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290 + + E I LA F+ G D + V E + Q +DP++ V RS + Sbjct: 240 QYKTKEEKKQEEKIINVLAPFIGGKDRVVAKVTIEYDFSEQSSTSEKFDPEN-VVRSEQS 298 Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 S++ + E + P+ V + ++ + E +K +NYE++ T + Sbjct: 299 SEEKR--EGAAPQQVGGVPGAVSNIGPVEGLAGGGGEKFEKTTGTTNYEVSKTVSTTKME 356 Query: 351 NYKLERLSIAVVVNKGRLT--EVLGRSADQ----GKIDSYLAEINKIVSAATGINSRRGD 404 +++R++ AVVV+ + G+ D+ ++ + I+ +V + G + +RGD Sbjct: 357 FARIKRMTAAVVVDGKYEPKKDASGQPTDEIEYIALDETQIQAIDALVKQSIGADEQRGD 416 Query: 405 TITITSMDFLENQLFNSGTVQVSFMDIL-SRHFATVINALVFLVGTLLVT-----FLGLH 458 +T+ + +F ++ VS + S + A +++ +++ + Sbjct: 417 QVTVRNFEFQMSKDGMRPKDAVSKTSLFISTYIAPFTPVFKYILVAIILFIAYKKIIIPF 476 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A R L + ++ E I A LM ++ Sbjct: 477 AERMLEFSREEEEFEKPNLEIADDEDEDLAEKVQLMRKKVENQLGLGENFNEDELKYDVL 536 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + ++ + E + E A +++ E Sbjct: 537 LE---------KVREIAEDHPEEIASLIQALIDEE 562 >gi|331269314|ref|YP_004395806.1| flagellar M-ring protein FliF [Clostridium botulinum BKT015925] gi|329125864|gb|AEB75809.1| flagellar M-ring protein FliF [Clostridium botulinum BKT015925] Length = 524 Score = 322 bits (825), Expect = 1e-85, Method: Composition-based stats. Identities = 119/565 (21%), Positives = 231/565 (40%), Gaps = 56/565 (9%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 I +Q + + L + + + + ++L I + +N+ Y LY ++ +D Sbjct: 3 KIKEQFKKLVEKFKELSKIKKIAFSVLVLGIITGIIYLVISLNTTKYAVLYKDMDPNDAQ 62 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 + L++ I++++ +N SI VP + R+ LA Q ++ + GYE+ D ++FG Sbjct: 63 TVMAKLADKKIEYKVENN--SIRVPEDKAAELRMELAPQ---LTNGSKGYEILDNGDTFG 117 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 +T +E+ RALEGE+AR I+S+ + A+V +VM G+F K +ASV + Sbjct: 118 MTDKERELKYKRALEGELARDIKSLPEVKDAKVLLVMQQEGNFFKQDDPGSASVTLEFET 177 Query: 182 PS--VYKSAEAIRHLVAAAVPNLDMGD---VTVLDSTGKLLT-------ANEMERNILGK 229 + +AI LV+ +V NL + V V++ + L+ N+ ++ K Sbjct: 178 GKKVTKEQIKAIVALVSGSVKNLPKENIKVVGVVNGKTQDLSEDLFKEDGNKDISSVTEK 237 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 S + ++ E I L G ++AV +++ D + ++DP++ V RS Sbjct: 238 QESYKKNLEKEYVKKIMNILTPKYGDG-VKAAVNVDVDFDASEKTSTLWDPNN-VVRSEE 295 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 KD S+ + SA V+ NM + + K S ++ NYE+ Sbjct: 296 TEKDTDNSKGGK-TSAGPVDNNMSNTYNAKDQNGTST----HEKTTKNYEVGKVEQKVVG 350 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 K++++S +V +N D+ +IN +V+ A + RGD +++ Sbjct: 351 APGKIKKISASVTIN------------DENLSPVDKDKINSLVAGAISYDESRGDIVSVE 398 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 M F E + + + I V L G+ AL R + Sbjct: 399 GMKFNEVNEAAAAEEAKKQAEEQKAKQKSFIYKCVGGAVAALAVIAGIVALIRKRRKKNK 458 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 E + I ++ +DN+ + + I N + + + K + Sbjct: 459 VDEEEEIEGID------------MLIDDNVEPNEPLKPINFDEENENTHVEKEIKKYASE 506 Query: 530 RLLHMIEINEERFAKILRKWARSEI 554 + E+ +I++ W + Sbjct: 507 K--------PEQVVEIIKAWMAEDE 523 >gi|119775432|ref|YP_928172.1| flagellar MS-ring protein [Shewanella amazonensis SB2B] gi|119767932|gb|ABM00503.1| flagellar M-ring protein FliF [Shewanella amazonensis SB2B] Length = 565 Score = 322 bits (825), Expect = 1e-85, Method: Composition-based stats. Identities = 93/527 (17%), Positives = 209/527 (39%), Gaps = 24/527 (4%) Query: 37 MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIH 96 + + P Y L K E ++ ++ L + I +++ + + VP R+ Sbjct: 51 VFVMMWAQEPEYRPL-GKFEAQEMIQVLDVLDKNKIPYQVDFD--VLRVPEDKYQDIRLL 107 Query: 97 LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHI 156 L+ G+ ++S+ + + + FG++ +++ + E +ARTI+ + + A+V + Sbjct: 108 LSRNGVDAAST-TNQDFLSQDMGFGVSQRLEQARLKHSQEQNLARTIEELKSVSRAKVIL 166 Query: 157 VMPDMGSFRKIGARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 +P F + ++ +A+V++ + + + +AI +VA+AV L+ VTV DS G+ Sbjct: 167 ALPKENVFARNQSKASATVVVTSRRGGLGQEEVDAIVDIVASAVQGLEPTRVTVTDSNGR 226 Query: 216 LLTAN--EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI 273 LL + + + L +V+ + E ++ L LG +N+ S V ++ + Sbjct: 227 LLNSGSQDGASARARRELELVKQKEAEYRAKVDAILMPILGPENYTSQVDVTMDFTAVEQ 286 Query: 274 REIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDR------KVPLPRSLE 327 ++PD RS + E + N P + + Sbjct: 287 TSKRFNPDLPAVRSEMTLETQTSGEANM--GIPGALSNQPPMESNIPQTLQEAQDKAQAN 344 Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR-LTEVLGRSADQGKIDSYLA 386 +E NYE++T T + R+S++V V+ G+ + ++ LA Sbjct: 345 GNSHREATRNYELDTTISHTRQQIGVVRRVSVSVAVDYKTGEANTEGQVNRVARTEAELA 404 Query: 387 EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFL 446 I +++ A G + +RGD+I + ++ F++ + + + + +L L Sbjct: 405 NIRRLLEGAVGFSGQRGDSIEVVTVPFMDQLVEEVPELPMWEQPWFWKAMKLASGSLAIL 464 Query: 447 VGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQ 506 V L V L L +D G +G + ++ L +D + + Sbjct: 465 VLILFVVRPLLKKLLLTDKVDMPDDGRLGHELAEIEDQFAADTLGMLNASDAEYSYADDG 524 Query: 507 DIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 I + + + + ++ E ++++ W + + Sbjct: 525 SILIPNLHKDDDM--------IKAIRALVANEPELSTQVVKNWLQQD 563 >gi|83589623|ref|YP_429632.1| flagellar MS-ring protein [Moorella thermoacetica ATCC 39073] gi|83572537|gb|ABC19089.1| flagellar M-ring protein FliF [Moorella thermoacetica ATCC 39073] Length = 524 Score = 322 bits (825), Expect = 1e-85, Method: Composition-based stats. Identities = 112/485 (23%), Positives = 203/485 (41%), Gaps = 32/485 (6%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 I + F++ T R+ ++ + L+ ++ P Y L+ ++ D Sbjct: 6 IFGKAKSFWQGLTPGRRSALVAVTLAALLA---AGFLVQWLVRPQYAPLFTNMQQQDAAA 62 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 ++ L E + +R++ +G++I VP + + R+ LA+ G+ ++ G+ELFD+ N G+ Sbjct: 63 VTAKLKEMKVPYRLTGDGTTIEVPKDQIYQLRLDLASAGVLNNGQ--GFELFDQ-NKLGM 119 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAI 180 T F + + RAL+ E+ RTI ++ + ARVH+V+P F + P+A+V+ ++ + Sbjct: 120 TDFERNLDYQRALQEELRRTIVTLDEVEDARVHLVIPQPSVFLQQQQPPSAAVVLKLKPL 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL------GKSLSIV 234 + + I L+AA+VP L + ++ V+D G +L+ + + I Sbjct: 180 ARLKPEQVKGIMELIAASVPGLKLENIRVIDMYGNVLSDGVADSANAPLSQKQQTQMEIK 239 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 + + ++E + L LG + V A+LN D Q+I + + RS + + Sbjct: 240 RQFEKDLEQRLQSMLTQILGPGKAVAMVTADLNFDQQEINQTTWG-KQGALRSEEIKTEQ 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 S A T N P N + + NYE++ T ++ Sbjct: 299 GTSNGGAGGVAGTAGNNGPGYPAVNPANG----NYNTSDTVHNYELDKTDTHTIVAPGQV 354 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 RLS AV VN + +I +IVSAA G RGD IT+TS+ F Sbjct: 355 RRLSTAVAVNG-------------PVNAALNNQIQQIVSAAVGYQPARGDQITVTSLAFD 401 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 + + R ++ V LV L+ L + LRR ++ Sbjct: 402 NSLQQQMAADMAAQQQRQQRLRQYLLWGGVGLVSLALLVTLIVLILRRRRQAALEEQMAA 461 Query: 475 GGKSI 479 Sbjct: 462 AALPA 466 >gi|332799173|ref|YP_004460672.1| flagellar M-ring protein FliF [Tepidanaerobacter sp. Re1] gi|332696908|gb|AEE91365.1| flagellar M-ring protein FliF [Tepidanaerobacter sp. Re1] Length = 519 Score = 321 bits (823), Expect = 2e-85, Method: Composition-based stats. Identities = 118/567 (20%), Positives = 231/567 (40%), Gaps = 68/567 (11%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + Q+++F++S + +I++ V++V + + + + ++ P Y LY L++SD Sbjct: 6 KLKHQVVEFWQSRDRAQKVKIIVSVIVVIVILGIML---YLISRPKYVPLYTNLDISDAG 62 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L + NI + + D G +I V K R+ LA +GLP S+S SG++ G Sbjct: 63 EIVKKLDDLNISYELEDGGKTILVDPEQKYKTRLTLAQEGLPKSNS-SGFDEMFNKTRLG 121 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA--RPTASVMIRA 179 T + +++ +AL+GE+ + I+ + + +ARV+IV + F + + P+A++ + Sbjct: 122 TTDWERQVQYNQALQGELTKAIEMMESVESARVYIVQQEKSLFIEPDSNYEPSAAIFLEV 181 Query: 180 INP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-----TANEMERNILGKSLS 232 + I +LV +V N+ +V V+D GK L + +E ++ L Sbjct: 182 KPGAQMTKEEIMGIINLVTYSVKNMKQENVVVVDQYGKTLSNAAISQSEDNEELINNQLV 241 Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK-----VERS 287 I Q++++ ++ L G N V A+LN D + ++ ++ P ++ + RS Sbjct: 242 IQDNFQNQLQASVQSLLEQIFGPGNVAVRVNAKLNFDKKIVQNKLFAPVNEETGEGIVRS 301 Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 I+ K+ V+ N+P + + + E N+EIN + Sbjct: 302 IQELKEHFSGTGGAYGGTPGVDSNVPGYNQTQTG----ESEQQRSEVIRNFEINETNENL 357 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 T +++L+++VV+N Q D+ I ++V A G + R D I+ Sbjct: 358 TVAPGAVDKLTVSVVIN-------------QELNDAEKDSITQVVGNAIGYDPER-DQIS 403 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF-LVGTLLVTFLGLHALRRLHNI 466 I M+F + + F D ++R + G +L L +R N Sbjct: 404 IEGMEFKND-------MAKFFADEMARQQKEQARMRNIKIAGLILSIILAFIIIRMFLNR 456 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 A E + ++A T Q Sbjct: 457 RKAISEEEKISEEMLAMQQAAATQT------------------------QDESQEIKESS 492 Query: 527 SDLRLLHMIEINEERFAKILRKWARSE 553 ++ + E AK+L+ W + + Sbjct: 493 FYDKIEKLARRKPEEVAKVLKTWLKED 519 >gi|167041778|gb|ABZ06520.1| putative Secretory protein of YscJ/FliF family protein [uncultured marine microorganism HF4000_093M11] Length = 461 Score = 321 bits (823), Expect = 2e-85, Method: Composition-based stats. Identities = 114/453 (25%), Positives = 199/453 (43%), Gaps = 17/453 (3%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 Q FF + + RI ILA++ ++ I ++ F N + L+ +E D I Sbjct: 14 QFQDFFGALS--LPKRITILAALGIILIG-MVSMIFVANRSSWAPLFSNVEPGDAAAIVE 70 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L E I + ++ G +I V V AR+ LA + + S +LF S G T F Sbjct: 71 KLQENQIPYMLAPGGRTIMVEPHRVDHARLTLAKEKVLPGSGVGFLDLF-ATPSLGETEF 129 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-AINPSV 184 Q + A EGE+AR I +I+ + +A+V + +P F PTA++ + + + Sbjct: 130 QQGVKFRVAQEGELARLISTINVVKSAKVSLAIPQKTLFSDNQVEPTAAIALNLTSSGAS 189 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK---SLSIVQAIQHEI 241 K E I HLVA+AV L +V + D TG LL+ + + GK + S ++ E+ Sbjct: 190 RKQIETIVHLVASAVEGLSPRNVKITDQTGTLLSRGISDDSAGGKMNDNYSYKSRLEKEL 249 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 E + + + +G D R V A L D + I+E + DPD S ++ ++ S Sbjct: 250 EAKVVRQIEEVVGKDRVRVNVSATLRFDRRTIKEQLIDPDQTSVVSEQIVDESSTGTRSI 309 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 P V N+P + R+ ++ KK N+E + + I ++ RLS++V Sbjct: 310 PVGPAGVTTNLPEATGREA---ATVSEFSKKNSTRNFESSRREIILESAVGEVVRLSVSV 366 Query: 362 VVNKGRLT--EVLGRS---ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 +++ R + G S + + I +V AA G N RGD + + +M F E Sbjct: 367 LLDNRRSQILDESGNSLGRTNTPWTEGEKETIIGLVKAAMGYNEERGDRVFVGNMPF-EA 425 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGT 449 + ++ + ++ V+ + + Sbjct: 426 AVEEDKASEIEATRVRNKFILDVVRYVALGLSA 458 >gi|224825756|ref|ZP_03698860.1| flagellar M-ring protein FliF [Lutiella nitroferrum 2002] gi|224601980|gb|EEG08159.1| flagellar M-ring protein FliF [Lutiella nitroferrum 2002] Length = 543 Score = 321 bits (823), Expect = 2e-85, Method: Composition-based stats. Identities = 123/552 (22%), Positives = 222/552 (40%), Gaps = 28/552 (5%) Query: 17 LGRTRILILASVILVPIMLFMAARFFVNSPH--YDNLYVKLEVSDVNRISVALSEANIDF 74 + + L ++++ I L +A F++ Y ++ E + L I + Sbjct: 1 MPAAAVRTLLPLLVLAIGLTLAVTFWLWRDDARYKPVFGAQEKVVAADMMAVLDAEKIPY 60 Query: 75 RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134 R+ + VP + +G+ R+ LAA+G+ + +G EL DK + G++ F+Q++ R Sbjct: 61 RLHPQTGQVLVPDADLGRVRMALAAKGVVAQ-LPAGLELLDKNDPLGVSQFVQDVRFRRG 119 Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA-RPTASVMIRAINPSVY--KSAEAI 191 LEGE+ ++I ++ + ARVH+ +P SF G + +ASV++ + A+ Sbjct: 120 LEGELTQSILALEPVQGARVHLSLPRSSSFVTAGEDKGSASVVVTLKPGRQLSNEQIAAV 179 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMNINKAL 249 +LVA +V L+ VT++D G LL++ E + + E N+ L Sbjct: 180 VNLVAGSVSTLNPAKVTLVDQAGNLLSSRIELAEGGQPAAESDAAKRYREEALENVRALL 239 Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309 +G DNF+ ++ AE++ D + Y K+ + +S Sbjct: 240 TPVIGADNFKVSITAEVDNDRVEETREKYGEAPKITNEASREE---KSNDKLALGIPGSL 296 Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369 N P +D P S+ K Y + + H +L RLS+AVV+N+ Sbjct: 297 SNRPINTDSSAPAQESVGGNSKNAVTRQYAYDRSIMQIKHARGRLSRLSVAVVLNQA--- 353 Query: 370 EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFM 429 A G LA ++K++ GI + RGD + +T+M+F Q Sbjct: 354 ---AAPAKGGWQAEQLANVDKVLRNGLGIKAERGDALAVTAMNFPGQVALEPWWQQ---R 407 Query: 430 DILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPP---IS 486 D L + + + L+G LL+ L LR+ + V + P P Sbjct: 408 DTLLDGASWLAYGVALLLGYLLIARPLLKILRQWASRPQTAGALVPLAAQGQPEPLLLEP 467 Query: 487 SAVTTGLMPNDN-IALDSSNQDIFSHSRNLQSRINSYVSKQS----DLRLLHMIEINEER 541 G P +AL S L + + S L + ER Sbjct: 468 DEQPAGTAPQGRPLALPEGPPTGASPVMPLLENYDLPPAGSSVDVLVDHLKGLAAKEPER 527 Query: 542 FAKILRKWARSE 553 A+++++W + + Sbjct: 528 VAEVVKQWVQKD 539 >gi|90406819|ref|ZP_01215011.1| flagellar M-ring protein [Psychromonas sp. CNPT3] gi|90312056|gb|EAS40149.1| flagellar M-ring protein [Psychromonas sp. CNPT3] Length = 571 Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 105/562 (18%), Positives = 237/562 (42%), Gaps = 35/562 (6%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 L FF + L R +I+ +I++ I++ + + + P Y L + ++ Sbjct: 31 LATFFSNVDVL-RQISMIIGLLIVLAIVVIIWS--WGKQPDYRPL-GNYQTDELISTLDF 86 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L + I +++ G+S+ V + K ++ + GL +++SG ++ + FG++ + Sbjct: 87 LDKEKITYQLE--GNSVLVEAEQYQKIKLLMTRAGLTQDTNDSGDDILLQDMGFGVSQRV 144 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSV 184 + + E +I+ I S+ I A+V + +P F + + +A+V+I Sbjct: 145 ERERLKLSRERQISVAIMSMKNITKAQVLLAIPKQSVFARKERKASATVVITTSKSYTLS 204 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIE 242 + ++I +VA++V L VTV D G+LL + + + ++ + ++E + Sbjct: 205 AQEIDSIVDIVASSVQGLSPNSVTVSDQRGRLLHSGSQDGLSSRSSAEFALERGRENEYK 264 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 I+ L LG+ N+ S V ++ ++ + +++P K RS L + +S S Sbjct: 265 SKIDAILIPILGLSNYTSEVDLAMDFTIKEETQKIFNPSKKSVRSEMLVET--KSTNSIL 322 Query: 303 ESAVTVEQNMPHVSD-------RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 + N P + + +S+ EE NYE++T + H ++ Sbjct: 323 GNIPGALSNQPPAASSIPEELRKDGDKKKSVIGNSHNEETRNYEMDTTVVHIKHKVGTID 382 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 RL+++V ++ T G + D+ + ++ +++ G++ RGD + + S+ F Sbjct: 383 RLAVSVALDYVPTTNEAGEVTYAPRTDAEVEKLRRLLMGGLGLDIERGDILEMASVRFNR 442 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 L + + + + LV L+ LL+ + L ++D ++G Sbjct: 443 LDLDAVPEEEFWKTEAFQGYIRFGGSMLVILLTLLLIVRPIMKKLLYPETLEDEDDYDLG 502 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDI---FSHSRNLQSRINSYVSKQSDLRLL 532 G G + NDN+ L ++++D+ F N + + + Sbjct: 503 GAI-------------GDLGNDNLQLLTADEDVSMEFDIGGGHIKLPNLHKDEDLLKAVR 549 Query: 533 HMIEINEERFAKILRKWARSEI 554 ++ A+++++W S+ Sbjct: 550 ALVANEPGLSAQVIKEWLTSDE 571 >gi|296283238|ref|ZP_06861236.1| flagellar MS-ring protein [Citromicrobium bathyomarinum JL354] Length = 514 Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 123/514 (23%), Positives = 225/514 (43%), Gaps = 28/514 (5%) Query: 44 NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP 103 +S LY L+ + I+ L N+ F +S +G+++ P + + + R+ +A + L Sbjct: 24 SSDKMGYLYTDLDPTAAQAITEKLRAQNVPFSLSGDGTAVMAPENRLPELRMSMAGEQL- 82 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 GYE+ D +FG++S +++ RA+EGE+ R+I ++ IV ARVH+VMP+ Sbjct: 83 --GGAIGYEVLDTQQAFGVSSSREKMNETRAIEGELGRSIATLQSIVNARVHLVMPERAL 140 Query: 164 FRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME 223 F + +ASV ++ + EAIR+LVAAAVP L ++++D TG LL Sbjct: 141 FAPEARKASASVTVKTRGKLSSGNVEAIRYLVAAAVPELSPESISIVDQTGALLARAGEA 200 Query: 224 RNILGKSLSIVQ-AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS 282 Q A + I I + +GV R+ V AE++ D + V+DPD+ Sbjct: 201 GEAGASQADERQVATEARIRSQIEALIEPIVGVGKVRAEVSAEIDRDQTREESEVFDPDT 260 Query: 283 KVE-RSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT-DKKEEQSNYEI 340 +V R I + Q E + VTV +P D + E+ ++ E ++ Sbjct: 261 QVIARQISVESGDQNRENAGATPGVTVGAQLPEGGDVMGGGGDTRESARNETSEDITFQN 320 Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400 +++ TT K+ RL++AV+V+ G +QG + + ++V A G ++ Sbjct: 321 SSRRTLTTRTPGKVSRLTVAVMVDGG----------EQGLPAPQVQRLTRLVENAVGYDA 370 Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460 RGD++ + SM F + L + F L L+ +V L L Sbjct: 371 ERGDSVIVESMPFAQPDEIADAEGDFWSDLPLGQLFD-----LGKLLVIAVVGLFVLRML 425 Query: 461 RRLHNIDDAKKGEVGGK--SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 R N+ + G++ +++ P L + AL D ++ Sbjct: 426 RP-KNVPASAAGQLPSPEQNVIDLTPEGRGGEEQLENDGAPALSGPELD----DEIALAQ 480 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 + + + ++ + + A ++R+W + Sbjct: 481 VEGKLKASALKKIGDAVAASPAESAAVVRQWLSA 514 >gi|330862343|emb|CBX72503.1| hypothetical protein YEW_GP28340 [Yersinia enterocolitica W22703] Length = 519 Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 118/542 (21%), Positives = 237/542 (43%), Gaps = 43/542 (7%) Query: 26 ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISV 85 + + + + +S Y L+ E V ++ L I +RI+ + I V Sbjct: 1 MGAAAILVTGAIIFSLWRSSQGYTALFGSQEHIPVTQVVEVLDGEAIAYRINPDNGQILV 60 Query: 86 PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145 + +G+A I LAA+G+ +++ +GYEL D+ G + F+Q + R+LEGE+A++I + Sbjct: 61 AENQLGRACILLAAKGI-TATLPTGYELMDQETMLGSSQFIQNVRYKRSLEGELAQSIMA 119 Query: 146 ISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNL 202 ++ + ARVH+ M + SF + +ASV++R K AI LVA ++P + Sbjct: 120 LTSVDYARVHLGMSEASSFAISNRSESSASVILRLKYGQTLKADQVGAIVQLVAGSIPGM 179 Query: 203 DMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNF 258 +V V+D G+LL+ AN + + +Q E +I L++ +G +N+ Sbjct: 180 KAANVRVVDQHGELLSEAYQANGKGMTNVKNGAELAHYLQSTTEKSIANLLSSVVGANNY 239 Query: 259 RSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDR 318 R +V +L++ + Y + +V S + + E + A+ + ++ + Sbjct: 240 RISVATQLDLSRVEETLERYGAEPRV------SDENIQQENGNEDMAMGIPGSLSNQPAA 293 Query: 319 KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ 378 + + + + Q Y + H +KLE++++AV++NK A + Sbjct: 294 QPKNANAPAAMSRSQAQRKYAYDRDIRHVRHPGFKLEKMTVAVILNKSA-------PALE 346 Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFAT 438 L E+ +++ A GI+++RGD++T+ + F L + + + D + + Sbjct: 347 KWTPEQLNELKRLIEDAAGIDAKRGDSLTLNMLAFTVPTLIDEPVI-AWWQDATTFRWVE 405 Query: 439 VINALVFLVGTLLVTFLGLHALR-RLHNIDD-----AKKGEVGGKSILSPPPISSAVTTG 492 + + + G+ L RL DD A + G ++ + SSA T Sbjct: 406 IAGIGLLSLLF---LLFGVRPLMARLSRRDDKHSALAMAENIDGLNVTNTTSESSATTEP 462 Query: 493 LMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 ++P + NL + + K S L + + ER A+++++W + Sbjct: 463 MLPGSSF----------KEDDNLPPQGSGLEIKISH--LQQLAQSETERVAEVIKQWINN 510 Query: 553 EI 554 Sbjct: 511 NE 512 >gi|256376473|ref|YP_003100133.1| flagellar M-ring protein FliF [Actinosynnema mirum DSM 43827] gi|255920776|gb|ACU36287.1| flagellar M-ring protein FliF [Actinosynnema mirum DSM 43827] Length = 559 Score = 320 bits (821), Expect = 3e-85, Method: Composition-based stats. Identities = 111/557 (19%), Positives = 224/557 (40%), Gaps = 30/557 (5%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + L+ + +L + + + P Y LY L D + I L+ A Sbjct: 14 LSGFKAFTAGQKLVAGATVLAVVGAIAFYFLWASKPTYAPLYTSLASKDASAIVDQLTAA 73 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 + + ++D G +I VP V R+ ++A LPS S ++GY L D+ + FMQ++ Sbjct: 74 GVTYELTDGGQTIMVPQDQVYPMRLKMSAANLPSQS-DTGYALLDQ-QGVTTSEFMQQVG 131 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RA+EGE+ TI++I G+ +A VH+ +P F ++PTA+V++ Sbjct: 132 YQRAMEGELGSTIKAIDGVTSASVHLAIPQKDVFSDSDSKPTAAVLVGTGAGKSLSQAQV 191 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAIQHEIEMNI 245 + I HLV+++V + VTV + GK+L+ A+ + G +A + + ++ Sbjct: 192 QTITHLVSSSVEGMSADGVTVAGTDGKVLSTGGADGASASANGDRDDQTKAFEQRLSTSL 251 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-DSKVERSIRLSKDAQRSETSQPE- 303 + L+ +G D+ V A+L+ D + + Y D S + ++ + Q Sbjct: 252 QQMLSQVVGQDHAVVQVTADLDYDQTETKSQTYTSGDGTAPLSESSTTESYTGDGGQNAA 311 Query: 304 ----SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + N + ++++ N +N+ K+ +L + Sbjct: 312 GGVLGSTNGTLNGLEGNTTNGTGGSGNGTYNQEKSTRNNAVNSVIETRQSAPGKVRKLGV 371 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN-QL 418 AV++++ V +AE+ +I S+A +++ RGDT+ ++SM F + Sbjct: 372 AVLLDQKTAGAVD------------MAEVERIASSAVALDTARGDTLAVSSMPFDTSAAQ 419 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL-GLHALRRLHNIDDAKKGEVGGK 477 V ++ V +G L + + + RR A + E+ Sbjct: 420 QGEAAVAAQQAQAQQDELMGMVKTGVAGLGVLALLIMTMIATRRRRKRAAAAAEAELAKL 479 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH---M 534 L + + + D S ++ ++ V + + R+ + Sbjct: 480 DELKAQLERTRTSEIEAAIAEKQALVAGNDFPQLSGPKRAEVDPLVVAEQEKRMGEIQSL 539 Query: 535 IEINEERFAKILRKWAR 551 ++ E A++LR W Sbjct: 540 VDEQPEEVARLLRGWLA 556 >gi|118444659|ref|YP_877975.1| flagellar MS-ring protein [Clostridium novyi NT] gi|118135115|gb|ABK62159.1| flagellar M-ring protein FliF [Clostridium novyi NT] Length = 523 Score = 320 bits (821), Expect = 3e-85, Method: Composition-based stats. Identities = 124/566 (21%), Positives = 234/566 (41%), Gaps = 59/566 (10%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 I ++ L + + + + + + I + F+N+ Y LY ++ +D Sbjct: 3 KIKEKFKNLIDKFKELSKGKKIAFSILGVGIISGLIYLIVFLNTTKYAVLYKDMDPNDAQ 62 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 + L+E +++++ + SSI VP V + R+ LA Q +S + GYE+ + +SFG Sbjct: 63 TVMTKLNEKKVEYKVEN--SSIKVPEEKVSELRLELAPQ---LTSGSKGYEILENADSFG 117 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 +T +E+ ALEGE+A+ I+S+ + A+V +VMP G+F K ASV I Sbjct: 118 MTDKERELNYKIALEGELAKNIKSLPEVKDAKVLLVMPQEGNFFKQAENAQASVRIEFNE 177 Query: 182 PS--VYKSAEAIRHLVAAAVPNLDMGDVTVL--------DSTGKLLTANEMER--NILGK 229 + +AI LV +V NL +V ++ D T L + + + ++ K Sbjct: 178 GKSISKEQIKAIVSLVTGSVKNLKKENVKIIGVLNGKTKDLTDDLFSEEDGKDLTSVTDK 237 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 + ++ E I L G ++AV +L+ D + V+DP++ V RS Sbjct: 238 QNKYKKNLEKEYVKKIMNILTPKYGEG-VKAAVNVDLDFDASEKTSTVWDPNN-VVRSEE 295 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 + KD ++S+ + SA V+ NM + + + S ++ NYE+ T Sbjct: 296 IEKDTEKSKDGKV-SAGPVDNNMSNTYNNQDGNSSST----HEKTTRNYEVGKIEQKTVG 350 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 K++++S +V +N L V +IN +V+ A + RGD IT+ Sbjct: 351 APGKVKKISASVTINDENLNPVDK------------DKINSLVAGAISYDENRGDIITVE 398 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL-RRLHNIDD 468 + F E + + T I + L+ G+ AL R+ N + Sbjct: 399 GLKFNEINDAKAEEEAKKQAEEQKAKQRTFIYKCIGGAVIALLLIGGIIALIRKRKNKKE 458 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 + ++ G +L +D + + I N + I + K + Sbjct: 459 EAEEQIEGIDMLI--------------DDEVEPKEPLKPINFDEENESTHIEKEIKKYAT 504 Query: 529 LRLLHMIEINEERFAKILRKWARSEI 554 + ++ A+I++ W + Sbjct: 505 EK--------PDQVAEIIKAWMAEDE 522 >gi|225181611|ref|ZP_03735052.1| flagellar M-ring protein FliF [Dethiobacter alkaliphilus AHT 1] gi|225167719|gb|EEG76529.1| flagellar M-ring protein FliF [Dethiobacter alkaliphilus AHT 1] Length = 519 Score = 320 bits (821), Expect = 3e-85, Method: Composition-based stats. Identities = 123/559 (22%), Positives = 223/559 (39%), Gaps = 61/559 (10%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 ++ + L + + + + + I+ + P L+ LE D RI+ Sbjct: 11 RVQDLPEKWQQLSQRKKIAAIVMAVAIIVTLFFLGQAIARPRMALLFTGLEPVDAGRIAA 70 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L E N+ + + D G +I V MV RI LA+ + SG+ELFD+ N G T F Sbjct: 71 RLQEMNVQYSLDDEGRTILVRQDMVDDVRIQLASDESLNIGGGSGFELFDQTN-LGATDF 129 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 + + +RAL+ E+ RTI + + ARVH+ +P+ F + A P+AS+++ S Sbjct: 130 NRRMDYLRALQEELRRTIVRLDEVEQARVHLALPEPSVFIQDSAEPSASIVLALSPVSRL 189 Query: 186 KS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK-------SLSIVQA 236 S I HLVA +V N+ +VTV+D+TG +L+ + + L I ++ Sbjct: 190 DSERVRGIVHLVAGSVENMRPENVTVIDTTGNILSDQLDNLDPTKQLAEATMAQLDIKRS 249 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 + E+E + L LG + + A+L+ D+ + I +D + V RS ++++ Sbjct: 250 FEKELERRVQVMLERILGPGQAIAMITADLDFDSHESTVITFDSEG-VPRSQTITEEYFE 308 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 P A + N+P ++ +E +NYEIN + KL + Sbjct: 309 GAGVVPGEA-GADSNIPGY---PWVGGTGDSTYERYDETTNYEINETTERQIRAPGKLVQ 364 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 L+ +VVVN + + +I++ V AA G RGD+I++ M F + Sbjct: 365 LNASVVVNDNG----------GQLSQAQVRQISEAVEAALGYQVGRGDSISVQGMSFDTS 414 Query: 417 QLFNS--GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 ++ + + +++ R+ AL ++ ++ LR + + Sbjct: 415 HQEDAMLAMEEAARREMIERYVTIGAIALAAIIIFFVI-------LRAFRAWRERQLEAE 467 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 +P Q R+ R+ + Sbjct: 468 LAALASAPKIQEEPAEE-------------------MEETPQQRL--------HKRVRDL 500 Query: 535 IEINEERFAKILRKWARSE 553 E E A ++R W E Sbjct: 501 AEREPESVAHLIRAWLAEE 519 >gi|119715006|ref|YP_921971.1| flagellar M-ring protein FliF [Nocardioides sp. JS614] gi|119535667|gb|ABL80284.1| flagellar M-ring protein FliF [Nocardioides sp. JS614] Length = 531 Score = 320 bits (820), Expect = 4e-85, Method: Composition-based stats. Identities = 116/551 (21%), Positives = 210/551 (38%), Gaps = 35/551 (6%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 L + TS + ++ ++ +V++P Y LY L SD + I Sbjct: 9 LANLRTTFTSFTLGQQVVSVIGTAAILLAAFMVFRWVSTPDYAPLYSNLAASDASAIVDE 68 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L +++++ GS++ VP V RI L+ QGLP SS GY L D + F Sbjct: 69 LDSQGTPYKLANGGSTVMVPRDSVYATRISLSGQGLPEQSSGQGYSLLD-NQDISTSEFQ 127 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV-- 184 ++ RA+EGE+A TI+++ G+ A VH+ +P F PTASV+I + Sbjct: 128 EQTDFKRAMEGELASTIEAVDGVTTAVVHLALPPAKVFSDQQDPPTASVLIDTAAGTTFN 187 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN 244 + +AI HLVA+++ LD +VTV DS+GK+L++++ V + Q + Sbjct: 188 AEQVQAIVHLVASSIDGLDPDNVTVADSSGKVLSSSDAGALGASTRDQQVTSFQQQTSQR 247 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 I L LG N V A+L+ D Y +KV + + + S Sbjct: 248 IQSMLDRVLGPGNSTVQVTADLDFDKSVSESTTYGKSNKVPALSSSTSTEKYDGPAGGSS 307 Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 + V + + K+ S+ + + L + VV++ Sbjct: 308 SSGVVGPDGQMDSFGATGAGGKSSYVKESTTSDNAVEKTIEHRETAPGSINTLHVGVVLD 367 Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424 V ++ +++A GIN RGDT+ +T+M F + Sbjct: 368 TTAAQTVNP------------TDVQDLIAATVGINPDRGDTVQVTTMPFDRTADKAAAAE 415 Query: 425 QVSFMDIL--SRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482 + R + NA + + ++ L + ++ + Sbjct: 416 LAAATKAAKTQRMWDLARNAGIAVAILAVLLIAWLRSRKKSKRREK-------------- 461 Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR-LLHMIEINEER 541 ++ + ND ++ +S L++ ++ + R L + + E Sbjct: 462 ---TTTYLVEQLRNDAAERQAAAAVAIQNSPALEALESADRAGDEMRRELADLADGQPED 518 Query: 542 FAKILRKWARS 552 A +LR W Sbjct: 519 VAALLRGWLVE 529 >gi|320107022|ref|YP_004182612.1| flagellar M-ring protein FliF [Terriglobus saanensis SP1PR4] gi|319925543|gb|ADV82618.1| flagellar M-ring protein FliF [Terriglobus saanensis SP1PR4] Length = 559 Score = 320 bits (819), Expect = 5e-85, Method: Composition-based stats. Identities = 128/539 (23%), Positives = 221/539 (41%), Gaps = 60/539 (11%) Query: 37 MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIH 96 +A ++ + L+ LE D+ ++ L A I ++ + +GS I V + + KAR+ Sbjct: 53 VALVWWTGRTDWRPLFKGLEGRDLQQVEQQLGSAGIAYQPTPDGSGIEVAAEQMDKARMV 112 Query: 97 LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHI 156 +AA+G+P S G+ELFDK N G + F +++ RALEGE+ TI+++ + +ARVH+ Sbjct: 113 VAAKGMP-GSGRMGFELFDKPNWVG-SEFDEKVNYQRALEGELEHTIETLGAVRSARVHL 170 Query: 157 VMPDMGSFRKIGARPTASVMIRAINPS-VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 + F TASV+++ N S A +IR LVA AV NL V ++D+ G Sbjct: 171 TLSRQSLFAAEEHPATASVVLKMRNASLARDQAASIRALVAGAVENLHPEQVALVDADGH 230 Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 +R VQ + +E + L G N R+ V + + ++ + Sbjct: 231 FDLNGPTQRGE-------VQEQEQALERKLVAMLEPLAGTGNVRATVNLSFDSEAEERTD 283 Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDK---- 331 VYDP S++ S+ + Q + NMP + PL + E D Sbjct: 284 EVYDPQQSAPVSMQRSEQSSTQANRQ-GAVAGAAANMPGPAPAVPPLLATPEKKDANGLP 342 Query: 332 ------------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA--- 376 +EE S+Y + + T +++R+ AVVVN +TE G+ Sbjct: 343 VYPQAGGPSQAVREESSSYAVTRHLVHTQRGPGRVQRIVAAVVVNDRAVTEKAGKDGATL 402 Query: 377 DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG---TVQVSFMDILS 433 + + + + ++ AA G + +R D + I ++ F EN Q Sbjct: 403 WKQRTPEEMRRLEQLAQAAVGFDPKRADQVVIENIAFSENAADARPNWFERQAEHGSNFL 462 Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493 R +I L +V LV F L L G + + P A T + Sbjct: 463 RMQPVLIRTLGVVVCGALVCFFVLRPL--------------GEQVSKALQPALPAPRTAI 508 Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 D+ +I+ + + + + I + ++ A++L W S Sbjct: 509 -------------DLNIPVPPEGGQISPSQVQSTFEAVKNQIRSDPQQSARLLESWIGS 554 >gi|118475241|ref|YP_891471.1| flagellar MS-ring protein [Campylobacter fetus subsp. fetus 82-40] gi|118414467|gb|ABK82887.1| flagellar M-ring protein FliF [Campylobacter fetus subsp. fetus 82-40] Length = 568 Score = 320 bits (819), Expect = 6e-85, Method: Composition-based stats. Identities = 117/561 (20%), Positives = 230/561 (40%), Gaps = 28/561 (4%) Query: 3 ILDQLLQFFKSGTSLGRTRILILAS---VILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 + Q+ Q +++ T + LV + L+ ++ Y L+ L +D Sbjct: 6 LFHQVGQLYQNLTLKQKIVAASSVVIVVGFLVFLSLYKSSSSGSEYDGYSILFRNLNPAD 65 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 +I L + + +++++ G +I VP+ V K RI +A+ G+ N G+E+FDK Sbjct: 66 SAQIIAQLEKDGVTYKLANEG-TILVPTKSVYKERIAVASLGIMKDGKN-GFEIFDK-QD 122 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 FG T Q + RA++GE+++TI+ + I A V+I P F + PTASV+++ Sbjct: 123 FGATDNEQRVKFQRAIQGELSKTIEGLEPIEKATVYIAFPKDSVFTERQVPPTASVVVKI 182 Query: 180 INP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQ 235 + K + I+ +VA +V NL DV ++ G + +E +E ++ + + Sbjct: 183 KDGEKLNRKQIDGIKRIVAGSVTNLKAEDVKIVTQDGVAVGDDEIALESELVASQIKYKK 242 Query: 236 AIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 ++ E I + F G D + V E + + + +YDP+S + + + Sbjct: 243 EFENTYEQKIIDMIGKFTGGRDKVTAKVSIEFDFSVKDSQSEIYDPNSVIRSEQNIEEKR 302 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 + + + N+ V P E K +NYEI+ K I + Sbjct: 303 EGKQPKEVGGVPGAVSNIGPVEGLDQNKPD--ELYTKNVANTNYEISKKIIKVKDQYATI 360 Query: 355 ERLSIAVVVNKGRLTEVL------GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 +R++ AVVV+ E A + + +I +V G NS RGD +T+ Sbjct: 361 KRVTAAVVVDGKYEREKKEDGSLSDTIAYVPLSEDEINKIKSLVEQTIGYNSTRGDEVTV 420 Query: 409 TSMDFLENQLFNSGTVQVS-FMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNI 466 ++ +F + N+ T ++ F D + +I L+ L+ + + L+++ Sbjct: 421 SNFEFKKAGNLNANTTKIGIFYDSYLKPLTPIIKYLIVLLILFVFYKKVITPFLQKMVEN 480 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMP----NDNIALDSSNQDIFSHSRNLQSRINSY 522 + E + + D + + + L ++ Sbjct: 481 AKDEDFEPQKEESNIEEEAEDTLEKFKAARKRVEDELGIGEDFNEDELKYEVLLEKMKLI 540 Query: 523 VSKQSDL---RLLHMIEINEE 540 VS++S+ L MI+ + + Sbjct: 541 VSERSEEISTLLQGMIKNDSD 561 >gi|91795006|ref|YP_564657.1| flagellar MS-ring protein [Shewanella denitrificans OS217] gi|91717008|gb|ABE56934.1| flagellar M-ring protein FliF [Shewanella denitrificans OS217] Length = 565 Score = 320 bits (819), Expect = 6e-85, Method: Composition-based stats. Identities = 117/571 (20%), Positives = 230/571 (40%), Gaps = 41/571 (7%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 ++ Q ++ T + +++ +++ + + + S Y LY E + + Sbjct: 20 SLFSSAAQGWRRFTQGDKQ--VMVLALLATVVASVIVIMLWTASQGYRPLYGSQENVETS 77 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 ++ L I +RI + + V +GKAR+ LAA+G+ + + EL +S G Sbjct: 78 QVIEVLEAEGIYYRIESHTGLVLVADDQLGKARMLLAARGVKAKVPSGMDEL--DSSSLG 135 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAI 180 + FM++ LEGE+AR+I S+ + +ARVH+ +P F + PTASVM++ Sbjct: 136 TSQFMEQAKYRHGLEGELARSIMSLKNVRSARVHLAIPKRSLFIRQTPELPTASVMLQLS 195 Query: 181 NP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER----NILGKSLSIV 234 EA+ +LVA +V ++ V ++D G+ L+AN E + ++ Sbjct: 196 PGAELSQSQVEAVVNLVAGSVTGMETSGVKIVDQEGRFLSANINEDQDMTQARDRQITYT 255 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 + ++ + N + L A LG +NF+ + A++N + + + DP S + + S D Sbjct: 256 RELEQNLMHNASSMLEAILGPNNFQVKIAAKVNFNQIEETKEALDPQSVLVQERTSSDDK 315 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 + + N P + + ++E +++ + +L Sbjct: 316 NAA---LAQGIPGALSNQPPQAAEGDKKDNTR--NLRQEANRQFDVGRSVRHIRYQQMQL 370 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 E +S++V+VN T G + D D+ L ++ +V A G +S RGD+ +I + F Sbjct: 371 ENISVSVLVNN---TVATGLTTD----DAELTKLGSMVKDAIGFSSERGDSFSINAFAFS 423 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN--------- 465 + + L +L+G LL L L LR L + Sbjct: 424 VPTVAEFEPLPWW-------QVEDYQAYLRYLIGGLLGLGLILFVLRPLVSHLTFTAKHV 476 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 ++ ++ E + + + + TT + + NL + + Sbjct: 477 DNETREPETINLAKSAESTTAESNTTTRAAISQGHSAEKSTAEWLGGLNLPEPGSPLTVQ 536 Query: 526 QSDLRLLHMIEINEERFAKILRKWARSEIED 556 L + R A++L W + D Sbjct: 537 MEH--LGMLANQEPARVAEVLAHWIGDKDAD 565 >gi|34498454|ref|NP_902669.1| flagellar MS-ring protein [Chromobacterium violaceum ATCC 12472] gi|34104309|gb|AAQ60668.1| flagellar M-ring protein [Chromobacterium violaceum ATCC 12472] Length = 542 Score = 319 bits (818), Expect = 7e-85, Method: Composition-based stats. Identities = 115/540 (21%), Positives = 210/540 (38%), Gaps = 21/540 (3%) Query: 20 TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN 79 R L+ ++ + + + + + Y ++ E + AL I +R+ Sbjct: 12 WRYLLPIVLLAIGLSVVATLWLWRDDASYKPVFGAQEKVSGADMMAALDAEKIPYRVHPQ 71 Query: 80 GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEI 139 + VP + +AR+ LAA+G+ + +G EL DK + G++ F+Q++ R LEGE+ Sbjct: 72 TGQVLVPDGDLARARMQLAAKGVVAQ-LPAGLELLDKNDPLGVSQFVQDVRFRRGLEGEL 130 Query: 140 ARTIQSISGIVAARVHIVMPDMGSFRKI-GARPTASVMIRAINPSVY--KSAEAIRHLVA 196 ++IQ++ + +ARVH+ +P SF G + +ASV++ + A+ LVA Sbjct: 131 VQSIQALDPVRSARVHLSLPRSTSFVTAGGEKGSASVVVTLKPGQQLSSEQIAAVVKLVA 190 Query: 197 AAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLG 254 +V +LD VT++D G LL+A + + I G + + + E N L LG Sbjct: 191 GSVASLDPSQVTLVDQAGNLLSAHVDLSDGGIAGNNSEAARRFRDEALQNARDLLTPALG 250 Query: 255 VDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPH 314 NF+ +V A+++ D + Y KV + S N P Sbjct: 251 AGNFKVSVTADVDNDRVEETREKYGEAPKVTNEASREE---TSTERMALGVPGSLSNRPV 307 Query: 315 VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR 374 +D P K Y + L RLS+AV +N+ G Sbjct: 308 NTDSSSPA-ADKAGNSKNAVTRQYAYDRNITNIKRARGTLRRLSVAVALNQAAAPGGKG- 365 Query: 375 SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSR 434 + LA I+K++ GIN+ RGD + ++++ F + Q +R Sbjct: 366 -----WQPAELANIDKLLRNGLGINAERGDVLAVSTLRFAQPTPAEPFWEQPETWFEGAR 420 Query: 435 HFATVINALVFLVGTLLVTFLGLHAL--RRLHNIDDAKKGEVGGKSILSPPPISSAVTTG 492 A + L+ + L R+L++ + +L P+ A + Sbjct: 421 WAAYAVALLLAYLLLARPLLKLARQLAERKLNDYTPDELDVTPDDPLLDNRPLREAASQR 480 Query: 493 LMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 DS + N L + ER A+++++W ++ Sbjct: 481 QAALSAAPGDSPVVPLL---ENYDLPPAGSPVDVMVEHLKGLAAKEPERVAEVVKQWVQN 537 >gi|149908770|ref|ZP_01897431.1| flagellar M-ring protein [Moritella sp. PE36] gi|149808312|gb|EDM68251.1| flagellar M-ring protein [Moritella sp. PE36] Length = 580 Score = 318 bits (815), Expect = 2e-84, Method: Composition-based stats. Identities = 123/561 (21%), Positives = 240/561 (42%), Gaps = 47/561 (8%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 L R R L ++ I + A + Y LY K E+ D I L + DF+ Sbjct: 35 KLYRFRSLFFIGLLSSLIAAAIVASLWTAE-QYVPLYGKQEMYDKANILELLEQQKADFQ 93 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135 + I V S + + R+ LAA G+ + L K G + FM+ + AL Sbjct: 94 LDTESGQILVAKSQLAQLRMALAALGVKKNIPMGMGGLEGK-MGLGTSQFMESKSYRFAL 152 Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRAINPSVYKSAE--AIR 192 EGE+A +I +I + ARVH+ +P+ F + + +ASVM+ + AI Sbjct: 153 EGELALSIITIDAVRNARVHLALPERTLFIGRHEEQASASVMLDLQPGRELSQGQVSAII 212 Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN----ILGKSLSIVQAIQHEIEMNINKA 248 +LVA++V NL +++V+D G+LLT + + + + + ++ ++ + I++ Sbjct: 213 NLVASSVTNLKPDNISVVDQAGRLLTLSGSQSSNRGQVATQQVTFKNDLEARLTRRISEL 272 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308 L +G +NFR + A+L+ + + P++ L+K+ R + S +AV + Sbjct: 273 LYPLVGAENFRIQLTADLDFNEVEETVETVSPETV------LTKENIREQVSGDVNAVGI 326 Query: 309 E---QNMPHVSDRKVPLPRSLEN-------TDKKEEQSNYEINTKSIATTHDNYKLERLS 358 N+P V ++ + T + + Y + + ++ ++ LS Sbjct: 327 PGSLSNLPPVKKVTKKGKKTASSEAESSMITKRNDYSKEYVVGRSVMHKKYEFGRINNLS 386 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 ++V++N T +G D LA+I+ + A GI + RGD + I+ DF+ Sbjct: 387 VSVILNNKIAT------GKEGWSDEELAKISITIKNAIGIVASRGDQLNISGYDFIAVPE 440 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 + MD++ + L ++V T+L L + +R L ++ + + Sbjct: 441 ITLEALPWWQMDVIQAY-------LRYIVITILGLALIMFVIRPLTKHFVSQLRQADNAA 493 Query: 479 ILSPPPISSAVTTGLMPN---DNIALDSSNQDIFS----HSRNLQSRINSYVSKQSDLRL 531 + S S A T L + D + S ++ L + + + + + L++ Sbjct: 494 LASTEQTSEAKTNSLNTDIKPDELTKASKPVNMTELTSVEMPALPAPGSEFSVQLNHLQI 553 Query: 532 LHMIEINEERFAKILRKWARS 552 + + R A++L+ W +S Sbjct: 554 --LADKEAVRVAEVLKGWVKS 572 >gi|330505661|ref|YP_004382530.1| flagellar MS-ring protein [Pseudomonas mendocina NK-01] gi|328919947|gb|AEB60778.1| flagellar MS-ring protein [Pseudomonas mendocina NK-01] Length = 560 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 121/564 (21%), Positives = 229/564 (40%), Gaps = 37/564 (6%) Query: 12 KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71 ++G L LI +VI + + + + + + LY E + L Sbjct: 11 ETGLKLDPRMTLIGLAVIAALLAVGVVFYLWRDQGSFRPLYGAGEAYPAAEVMQVLDGDA 70 Query: 72 IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131 I++R+ + V +G+AR+ LAA+G+ +GYELFDK G + F+Q++ Sbjct: 71 INYRLHPQSGQVLVREDQLGRARMLLAAKGV-QVKVPAGYELFDKDEPLGTSQFVQDVRL 129 Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARP-TASVMIRAINP--SVYKSA 188 R+LEGE+ART+ ++ G+ ARVH+ + + SF P ASVM++ + Sbjct: 130 KRSLEGELARTVMALKGVEGARVHLALQESSSFVVGKREPGKASVMLQLAPGYKLTPEQV 189 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKA 248 AI +LVA +VP L+ G+V V+D G LL+ ++ +V Q + N Sbjct: 190 SAIVNLVAGSVPQLEAGNVQVVDQYGALLSRGIDTLGGPVQNWQVVDDYQSKAVANAEAV 249 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308 LA LG N+R +V A+++ ++ Y S RL + R E+ + A+ V Sbjct: 250 LAPVLGGGNYRISVSADIDFSQKEETFQAYG------ESPRLRNEVVRDESVLDQLALGV 303 Query: 309 EQNM-------------PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 ++ + + + +KE + + H + L Sbjct: 304 PGSLANRPPQPAPPANQQAQAGAQGENANQAATSLRKESNRQLDYDQSITHVKHAPFSLR 363 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 + SIAVV+N + + G E+ +V +A G N RGD +T++ F + Sbjct: 364 QQSIAVVLN-------AAVAPEGGWTPEAREELAAMVKSAVGFNQARGDLLTLSVFPFTD 416 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR---LHNIDDAKKG 472 + +G + + + H + VF + +LL+ + + R N Sbjct: 417 AGIGGAGEDLLPWWENSKVH--DLAKLGVFALISLLLLLMVVRPAVRSLSQRNQTGLPAM 474 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 G + ++ + +D + L + + + L++ Sbjct: 475 AEGDDQLALHAERAAERLLARVGDDAPGATVLGELSPLSEIRLPAPGSGLELQIEHLQM- 533 Query: 533 HMIEINEERFAKILRKWARSEIED 556 + + + ER ++++++W D Sbjct: 534 -LAKNDPERVSEVIKQWIGRNERD 556 >gi|262166236|ref|ZP_06033973.1| flagellar M-ring protein FliF [Vibrio mimicus VM223] gi|262025952|gb|EEY44620.1| flagellar M-ring protein FliF [Vibrio mimicus VM223] Length = 510 Score = 317 bits (813), Expect = 3e-84, Method: Composition-based stats. Identities = 108/529 (20%), Positives = 221/529 (41%), Gaps = 34/529 (6%) Query: 38 AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97 F+V P L E ++ + L + +++ +G++I VP S ++ + Sbjct: 1 MLFFWVREPDMRPLGA-YETEELIPVLDYLDQQKQQYKL--DGNTILVPVSDYNSLKLSM 57 Query: 98 AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 GL + +G E+ + FG++ +++ + E ++A+ I+ + I ARV + Sbjct: 58 VRAGL-NQERQAGDEILMQDMGFGVSQRLEQERLKLSRERQLAKAIEEMRQINKARVLLA 116 Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 +P F + +ASV + + K +A+ +VA+AVP + VTV D G+ Sbjct: 117 LPKQSVFVRQNQEASASVFLSLRTGANLKQEEIDAVVDMVASAVPGMKPSRVTVTDQHGR 176 Query: 216 LLTANEMERNILGKSLSIVQAIQHE--IEMNINKALAAFLGVDNFRSAVVAELNMDTQQI 273 LL++ + + Q E + I+ L LG+ N+ + V EL+ + Sbjct: 177 LLSSGSQDPVSAARRKEQELEKQQEEALRGKIDSVLIPILGLGNYTAQVDIELDFSAVEQ 236 Query: 274 REIVYDPDSKVERSIRLSKDAQRSE---------TSQPESAVTVEQNMPHVSDRKVPLPR 324 V+DP++ RS +D ++QP + ++ Q++ + D V Sbjct: 237 TRKVFDPNTPATRSEYTLEDYNNGNVVAGVPGALSNQPPADASIPQDVAQMKDGSVMGQG 296 Query: 325 SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV-NKGRLTEVLGRSADQGKIDS 383 S+ KE N+E++T + + R ++AV V ++ + G ++ Sbjct: 297 SV----HKEATRNFELDTTISHERKQSGVVNRQTVAVAVKSRSNVNSETGEVTYTPLSEA 352 Query: 384 YLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINAL 443 L I +I+ G + RGD + + SM F E ++ V + + + +AL Sbjct: 353 DLNSIRQILIGTVGYSENRGDLLNVLSMPFAEPEVEQIADVPIWEHPNFNDWIRWLASAL 412 Query: 444 VFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDS 503 V ++ L++ A+++L N ++ G PI + T L+ +D +DS Sbjct: 413 VIIIVVLVLV---RPAMKKLINPAADSDDQMYGP---DGMPIGADGETSLIGSD---IDS 463 Query: 504 SNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 F +L N + + + ++ E A++++ W ++ Sbjct: 464 GELFEFGSGIDLP---NLHKDEDVLKAVRALVANEPELAAQVVKNWMQN 509 >gi|322432996|ref|YP_004210245.1| flagellar M-ring protein FliF [Acidobacterium sp. MP5ACTX9] gi|321165223|gb|ADW70927.1| flagellar M-ring protein FliF [Acidobacterium sp. MP5ACTX9] Length = 525 Score = 317 bits (812), Expect = 4e-84, Method: Composition-based stats. Identities = 125/564 (22%), Positives = 234/564 (41%), Gaps = 48/564 (8%) Query: 1 MAILDQL----LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLE 56 MA DQ+ QF+ + T R L L + L + +P Y L LE Sbjct: 1 MAGFDQIFVQAKQFWATRTQSQR---LFLGVGAAATVGLLALFANLMVTPDYKPLISGLE 57 Query: 57 VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 +D IS L+ I F++S +G SISVP+ V AR+ +A+ + S G+E+FDK Sbjct: 58 SADAQAISADLTAKKIPFQLSPDGKSISVPADQVDAARLDVASNQ-STHSGRLGFEIFDK 116 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 V S+G T F +++ RALEGE+ RTI ++ G+ +ARVH+VM F ASV Sbjct: 117 V-SWGQTEFDEKVNYQRALEGELERTIVTLGGVKSARVHLVMATDSVFLDREKSAKASVT 175 Query: 177 IRAINPSVY-KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ 235 ++ + +I+ LV+ AV L DV+++D+ G + Sbjct: 176 LKLNRGGLSHDETASIQRLVSGAVEGLKPTDVSIIDADSN------QSMGAAGDGAMGEE 229 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 + ++ + L +G D+ R++V E + T + + YDP V +I+ S ++ Sbjct: 230 GAERQLTQRLMATLTPVVGGDHLRASVNVEYDPGTTEENQEKYDPAVSVPLTIQRSDEST 289 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 + T N+P P K E + Y +N + + +++ Sbjct: 290 GAGAGVGGVPGTT-SNVPQNKANVPPPVGEDSAQVSKTENATYGVNKITRHSLEPAGRIK 348 Query: 356 RLSIAVVVNKGRL----TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 R++ A+VV+ + L +I + A G+++ RGD I++ ++ Sbjct: 349 RITAALVVDDSVKRKLGANGKWTEIRTKRSPQELKQIETLAQNAIGLDTTRGDVISVENL 408 Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 F + V +D + + + + + + +L + +R + A Sbjct: 409 AFDRPDEPDVAPVTA--LDRARKGVSDFSSVVRYAMLLILFVLAYVLMIRPVQKKVLAVS 466 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 ++ + +L P +A L P+ ++A + ++ ++ Sbjct: 467 VQLPQQPLL---PEMAAALPLLAPSTSMARALALKE----------------------QV 501 Query: 532 LHMIEINEERFAKILRKWARSEIE 555 + ++ E A++++ W R E E Sbjct: 502 VQQVKSEPEGSARVVQAWLRGEAE 525 >gi|260893875|ref|YP_003239972.1| flagellar M-ring protein FliF [Ammonifex degensii KC4] gi|260866016|gb|ACX53122.1| flagellar M-ring protein FliF [Ammonifex degensii KC4] Length = 498 Score = 316 bits (811), Expect = 4e-84, Method: Composition-based stats. Identities = 121/561 (21%), Positives = 212/561 (37%), Gaps = 70/561 (12%) Query: 1 MAILDQ-LLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 MA+ + + + +KS S + + + + I + ++ +Y L+ L Sbjct: 1 MALATKPVWERWKSRWESFSPVQRVAVVVAGVALIACCVFLPLYLAQLNYAPLFKGLRPE 60 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG-LPSSSSNSGYELFDKV 117 D + L E + +R++D G++I VP V K R LAA+G LP + G+ELFDK Sbjct: 61 DAGAVVQKLEEMKVPYRMTDGGTTILVPKDQVYKVRAELAAKGALP--GAGKGFELFDKT 118 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM- 176 G+T F +++ RAL+ E+ RTI G+ ARVH+V+P F +P+ASV+ Sbjct: 119 -RLGITDFEEQVNYQRALQEELRRTILQFDGVEDARVHLVLPPRSPFVTEQPKPSASVVL 177 Query: 177 -IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSI 233 ++ + + E I LV+ AV L DV V+D+ G++LT + + Sbjct: 178 KLKPLEKLKPEQVEGIVALVSGAVQGLKPEDVRVIDTRGEVLTPPTQGGEVGAVRNQQEL 237 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293 V A + E+E + L LG V A+ + +++ + P +V S + Sbjct: 238 VLAFERELERRVKNLLDQILGPGKAAVMVNADFDFSRREV--VTVLPQGQVPVSEHTLTE 295 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 ++ + + +N K+E NY++ + + Sbjct: 296 QGAAQAAAGVAPT------------YPAGGAGGQNYSKQETTRNYQVGEQREKVIEVPGR 343 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 L RL+ +VVV+ + +I +V+ A G N +RGD IT+ S F Sbjct: 344 LRRLTASVVVDGN-------------LDPVTMQKIQNLVAGALGYNPQRGDQITVDSFTF 390 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 + A RRL+ + A G Sbjct: 391 DRTYQRQMEAEMAKAEAKARQEAAK----------------------RRLYTLIGAGAGG 428 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 + G +L + + + + Q + Sbjct: 429 LLGLVLLLLLRRRLRRAPEAPVVEEVVPVAVTAVPPPSPTD-----------QKFAEVKE 477 Query: 534 MIEINEERFAKILRKWARSEI 554 + E E A+I++ W RSE Sbjct: 478 LAEKRPEEVAEIIKVWLRSEE 498 >gi|167630289|ref|YP_001680788.1| flagellar m-ring protein flif, putative [Heliobacterium modesticaldum Ice1] gi|167593029|gb|ABZ84777.1| flagellar m-ring protein flif, putative [Heliobacterium modesticaldum Ice1] Length = 511 Score = 316 bits (811), Expect = 5e-84, Method: Composition-based stats. Identities = 132/560 (23%), Positives = 217/560 (38%), Gaps = 75/560 (13%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 L R + LIL ++ I+ A + P Y L+ L+ +D I L E +DF+ Sbjct: 3 RLSRQQKLILGGSLVAIIVSLAAFVYLAGRPDYVPLFQNLDPADAGAIQAKLKEQKVDFQ 62 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135 +S++G +I VPS RI LA GLP + G+E F + FG T +EI A Sbjct: 63 VSEDGKTILVPSKDQASLRIELANSGLPK-GTGWGFETF-NESRFGETEKEKEIRLKIAT 120 Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI--RAINPSVYKSAEAIRH 193 E E++RT+Q+I G+ ARV IV F+ TASVM+ + K I H Sbjct: 121 ETELSRTLQNIPGVENARVMIVPATDSLFKGNATDATASVMLILKPYATLEEKQIRGIIH 180 Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLTANEME---------RNILGKSLSIVQAIQHEIEMN 244 LV+ +V L +VTV+D+TG +L+ + L + + + +E Sbjct: 181 LVSRSVKQLKPENVTVVDNTGNVLSEGLFTAGGSDKVNLDGLAKAQLQMKKDFEASLEQK 240 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 L LG N V EL+ Q+++++ V S R +++A + T Sbjct: 241 AQDMLNRALGAGNAVVKVSTELDFSQQEVKDVKLG--KPVPLSTRETEEAGQGSTGS--G 296 Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK-LERLSIAVVV 363 N+P + + + K + N EI T L+RLS++V+V Sbjct: 297 TPGTSANIP----TQQATNNNTSSYSKTDSIVNNEIPKTETHTVTPPGSSLKRLSVSVMV 352 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN----------SRRGDTITITSMDF 413 N+ ++ K V+ A GI R + I++ M F Sbjct: 353 NR-------------TLTPEETQQLEKAVAQAVGIRYPIQPPAAGQPDRVEQISVLGMAF 399 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 + + +++ M + F + L+ L+ GL+A R A E Sbjct: 400 DRSAVD-----EMNRMAEEQKAFQRYLMIGGALIALALLVMAGLYARRAYLRRKPAPAPE 454 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 L P ++V T +P S + + ++ Sbjct: 455 -----PLPSPAFDTSVPTPPVPE------------LSPEEMEKLALR--------EKIEE 489 Query: 534 MIEINEERFAKILRKWARSE 553 + E N E A++L+ W E Sbjct: 490 LSETNPEAVARLLKTWLVDE 509 >gi|27904573|ref|NP_777699.1| flagellar M-ring protein [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|38257545|sp|Q89B00|FLIF_BUCBP RecName: Full=Flagellar M-ring protein gi|27903970|gb|AAO26804.1| flagellar M-ring protein [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 555 Score = 316 bits (810), Expect = 5e-84, Method: Composition-based stats. Identities = 114/464 (24%), Positives = 201/464 (43%), Gaps = 50/464 (10%) Query: 1 MAILDQ-LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 + + ++ L + F S SL +L++ + L+ +F +Y LY L D Sbjct: 9 LNVKNRDLKRNFFSNLSLNVRVLLLVFLITLIVFYIFFFKPL-----NYSILYNNLSNDD 63 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I L I F+ + N S + +PS+ + K + LA QGLP G+EL D Sbjct: 64 EKSIVSRLISLKIPFKFNQNHSELLIPSNALKKVYLDLAEQGLPKE-KKVGFELLD-TEK 121 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 FGL+ F +E+ RALEGE+AR+IQ + I ARVHIV+ F + P+ASV++ Sbjct: 122 FGLSQFNEEVNYERALEGELARSIQKLENIKTARVHIVLSKSSVFIREKKIPSASVILEI 181 Query: 180 INPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSLSIVQ 235 +I H+VA V NL + ++T++D G LL++ + L Sbjct: 182 KPGRYLNYNQINSILHIVAQGVSNLQIENITIVDQFGNLLSSMNDLYNDSYSNNQLKYSN 241 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD----SKVERSIRLS 291 I+ + I L +GV+N + V A+++ D Q+ E + P+ + RS++ Sbjct: 242 EIETGYKNKIESVLVPLVGVNNIHAQVTAQISFDKQENSEERFTPNYSNEKQSVRSVQNK 301 Query: 292 KDAQRSET------SQPESAVTVE--------------QNMPHVSDRKVPLPRSLEN--- 328 K+ + SE S + ++ + N+P+ S++ S N Sbjct: 302 KNIEFSEKYSDNSFSSNQGVLSNKKLNDLSNSSLLFNHNNIPNFSEQVSSTKNSKRNLSD 361 Query: 329 -------TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI 381 + + NYE++ + ++RLS+AVV+N + Sbjct: 362 ESVIPQSSTNQNYIVNYELDHVISHNKFNVGNVKRLSVAVVINYVKDKHGK----FVSLS 417 Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425 L I K+V + G + +RGD++++ + F +++ Sbjct: 418 TDKLNSIKKLVCESVGFSRKRGDSVSVVNFKFSTPEVYFQSPPS 461 >gi|323225205|gb|EGA09449.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] Length = 366 Score = 316 bits (810), Expect = 6e-84, Method: Composition-based stats. Identities = 91/352 (25%), Positives = 167/352 (47%), Gaps = 8/352 (2%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L++ + R +++ S + + +A + +P Y L+ L D I L Sbjct: 14 LEWLNRLRANPRIPLIVAGS---ATVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQL 70 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 ++ NI +R ++ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F + Sbjct: 71 TQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSE 128 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 ++ RALEGE+ARTI+++ + +ARVH+ MP F + P+ASV + Sbjct: 129 QVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDE 188 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMN 244 A+ HLV++AV L G+VT++D +G LLT +N R++ L ++ I+ Sbjct: 189 GQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRR 248 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 I L+ +G N + V A+L+ ++ E Y P+ ++ S+ SE Sbjct: 249 IEAILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGY 308 Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 V + + P + T+++ Q+ + +T + + + +R Sbjct: 309 PGGVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRNTQR 360 >gi|153951308|ref|YP_001398635.1| flagellar MS-ring protein [Campylobacter jejuni subsp. doylei 269.97] gi|152938754|gb|ABS43495.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. doylei 269.97] Length = 560 Score = 316 bits (809), Expect = 7e-84, Method: Composition-based stats. Identities = 113/568 (19%), Positives = 225/568 (39%), Gaps = 27/568 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNS-----PHYDNLYVKL 55 M + L Q + +L R + +++A+ I+V + + F S Y L + Sbjct: 1 MDFKNMLYQIGQLYQNLTRKQRIVIATSIVVVVGFLVFLALFRGSGSNANNGYAVLVENV 60 Query: 56 EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115 S I L + NI +++ + I VP + + R+ +A++G S G+E FD Sbjct: 61 SPSSSAAIVAKLEQNNIPYKLESE-NKILVPQDQIYRQRMFIASEGFIKDSR-VGFEAFD 118 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 +FG T+ Q++ RA+EGE+ARTI+++ I +A VHI P F + PTASV Sbjct: 119 -TQAFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASV 177 Query: 176 MIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLS 232 ++ K + I+++V+AAVP L +V + D +G L E E +++ + Sbjct: 178 VVNVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIK 237 Query: 233 IVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + +E I + LA F G+D + +V + + Q+ + +YDP+ V L+ Sbjct: 238 FKSDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLN 297 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 ++ + + + N+ V + ++ K + +N E++ Sbjct: 298 EERTGRKDPEIQGVPGAVSNIGPV--EGLDNKGQIDTYKKNQVTTNNELSKTITNIKKQF 355 Query: 352 YKLERLSIAVVVNKGRL----TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 + R S AV ++ +S LA + IV A ++ RGD++ Sbjct: 356 ATVLRTSAAVTIDGRYQDVVDENGDVKSEYVPLTKEELASVESIVKNAINFSATRGDSVV 415 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + ++ F + V+ +R I + + + +L+ + Sbjct: 416 VQNLPFHRESIRVESKVKT----FYNRFVEPFIPPVKYFIAAILLFIFYKKVIAPFTQKM 471 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 + + + P + N + + + I V + Sbjct: 472 L--EDVAAQEEMQQGPNAVLDDAEDALEKFNAVKKKVEEQLGFGDNFNEDSIQYEVLLE- 528 Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555 +L ++ E A +L+ +++ E Sbjct: 529 --KLRGLVSDKGEEIAALLQNLIQNDSE 554 >gi|147678424|ref|YP_001212639.1| flagellar MS-ring protein [Pelotomaculum thermopropionicum SI] gi|146274521|dbj|BAF60270.1| flagellar biosynthesis/type III secretory pathway lipoprotein [Pelotomaculum thermopropionicum SI] Length = 506 Score = 316 bits (809), Expect = 8e-84, Method: Composition-based stats. Identities = 114/563 (20%), Positives = 218/563 (38%), Gaps = 68/563 (12%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M+ D +F + SL +T+ +I V ++ P Y L+ LE D Sbjct: 1 MSPGDLAARFRERWQSLSQTQKVISVLVASGALVCLFYLGQLATRPAYAPLFTGLEPKDA 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L I ++I+D G +I VP V + RI LA+ G+ELFD+ + Sbjct: 61 GVIVDELKALKIPYQIADEGKTIKVPEDKVYEVRIQLASS-GALGGGGMGFELFDQ-SKL 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 G T F Q++ RAL+ E+ RTI + G+ ARVH+V+P F P+A+V ++ Sbjct: 119 GQTDFEQQVGYQRALQEELRRTIVQLEGVEQARVHLVIPQKSVFIGERGTPSAAVALKLK 178 Query: 181 NPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN------EMERNILGKSLS 232 + K + I L+ +V L +V ++D+ G +L+ + + + Sbjct: 179 PAARLKPEQVQGICDLLVGSVEGLKPENVHIIDTEGNVLSDDLKSGEWAVGTKTALEHQK 238 Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292 + + E+E + + L +G + + V A+L+ + QQ V + + S + + Sbjct: 239 ARREYEKELEKRVQQMLTQIMGQNKAVAMVTADLDFNQQQTTSTVSSNPNNLRISEHIVR 298 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 + + ++S N ++E NY++NT Sbjct: 299 ETGGGTEAGGPPGTD-----SNLSTYPALQGAGTTNYSREESTINYQVNTVQETVVKAPG 353 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 + RLS +VV+N + + ++ +V+AA G + RGD I ++SM Sbjct: 354 TVRRLSASVVLN-------------ETDGPVDVQKVRDVVAAAIGYDQARGDQINVSSMA 400 Query: 413 FLEN---QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 F ++ ++ S R + ++ L+ L + L L R + +++ Sbjct: 401 FDDSYLKKVEAEMAEAESRARFKERLYLYALSGGALLLVVLSILALLLWRRRAVQRVEE- 459 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 + F R +Q++ + + Sbjct: 460 ------------------------------------EPEFVTVREMQAQEERRIREDKQE 483 Query: 530 RLLHMIEINEERFAKILRKWARS 552 ++ M + + A+IL+ W + Sbjct: 484 QIRDMAKERPKDVAEILKVWLKD 506 >gi|54307259|ref|YP_128279.1| flagellar MS-ring protein [Photobacterium profundum SS9] gi|46911679|emb|CAG18477.1| Hypothetical FliF Flagellar M-ring transmembrane protein [Photobacterium profundum SS9] Length = 560 Score = 315 bits (808), Expect = 1e-83, Method: Composition-based stats. Identities = 121/576 (21%), Positives = 241/576 (41%), Gaps = 40/576 (6%) Query: 3 ILDQLLQFFKSGTSLGR----TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 ++ Q L S +++GR TR+++L +I + + + + Y LY + E Sbjct: 4 LMKQRLSNMASPSAMGRLLTGTRLIVLLGLIAALVTTAVVIGLWQGNSQYRPLYGEQEKF 63 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 D +++ L + +D+ I ++ V VGKAR+ LAA G+ + +G ++ + + Sbjct: 64 DRSQVISVLEQQGMDYYIEPQQGNVMVDRDSVGKARLALAAAGI-EAQLPAGLDILSQDS 122 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMI 177 S G + F++ LEGE+A +I ++ I RVH+ +P F R+ +P+ASV++ Sbjct: 123 SLGTSQFIESARYRHGLEGELALSIMALDAISNVRVHLAIPKKTLFVRREKEQPSASVVL 182 Query: 178 RAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSL 231 + + AI +LVA +VP+L+ V V+D G+LL++ L Sbjct: 183 SLSSGRELTTEQVTAIVNLVAGSVPDLNAERVNVIDQKGRLLSSVINREGKHSRNSSSYL 242 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 VQ ++ + L +G+DNF+ V A++N D + E Y PD V Sbjct: 243 EYVQKLEQSYIKRAARMLRPMVGIDNFQVEVAADINYDRTEATEESYAPDGSVRNEFSTI 302 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 R + N P + ++ E +Y ++ T + Sbjct: 303 ---DRRIGKAAQGVPGALSNRPPEDGEEEDPNAG---NERSESSRDYALDRVLKHTLYQQ 356 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 +++ LS+++++N LA I ++++ A GIN RGD +I Sbjct: 357 GQVKSLSVSILLNGQ----------PDTFPPEQLANIKQMLADAIGINEVRGDQFSILVY 406 Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 F + + V +M ++ + I L +V +++ L A+R+L + + Sbjct: 407 PFTKAEANLLADEPVWWMQLIWLDYLRYI--LSAVVALVILLVLVRPAIRQLSGSNKSTA 464 Query: 472 GEVGGKSILSPPPISSAVTTGL---MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 +++ S + T L + A+ ++ + + ++ + N + Sbjct: 465 LTAPNDKLVAITGESVSENTALNNDTSPEIEAVPATEKTETTSLSSVVTSENYLELPSPE 524 Query: 529 LRLL-------HMIEINEERFAKILRKWARSEIEDR 557 L + E ER A ++++W + +D+ Sbjct: 525 TGLEVQSSYLQMLSEKEPERVAHVVKQWITPKDDDK 560 >gi|114566385|ref|YP_753539.1| flagellar M-ring protein FliF [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337320|gb|ABI68168.1| flagellar M-ring protein FliF [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 540 Score = 315 bits (808), Expect = 1e-83, Method: Composition-based stats. Identities = 116/529 (21%), Positives = 221/529 (41%), Gaps = 55/529 (10%) Query: 43 VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL 102 Y+ LY +L+ D ++I+ L E + +++ + G++I VP + K R+ LA++ L Sbjct: 49 SRDTAYEVLYTELDKKDASQITAKLDEGKVPYKLENGGTTILVPPDLKDKTRLTLASENL 108 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162 P +G+ELF + + FG T +++ AL+GE+AR+IQS+ + AA+V++ +P+ Sbjct: 109 PRG--ETGFELF-QESKFGETQVDKKVKYQVALQGELARSIQSLDKVKAAKVNLALPEST 165 Query: 163 SFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-- 218 F P ASV++ K + I +LVA +V L +V ++D G L++ Sbjct: 166 LFSDNEELPKASVVVNTREEEKLSPKEIQGIINLVANSVDKLTTENVVIVDQHGNLVSEN 225 Query: 219 ---ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 AN + +++ + + E + I L LG +N V AEL+ D ++ ++ Sbjct: 226 LPMANGDISETVKWQMAMKRQYEKEKQDAIQSMLDKSLGQNNSVVRVNAELDFDNKEQKD 285 Query: 276 IVYDPD--SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKE 333 +Y D RS + K++ T + N+P ++V + DK Sbjct: 286 ELYSHDDAGPFVRSEEIKKESGTDTTQPVVGVPGTDTNIPQY--QEVDAAGGVSTYDKSS 343 Query: 334 EQSNYEINTKSIATTHDNYKLE--RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKI 391 + NYEIN T ++ L++AV+VN + + + +A I I Sbjct: 344 KIRNYEINKTEKVTKVAQGDVKYDYLTVAVLVNSKATEPLKLGETE----EEKIATIRNI 399 Query: 392 VSAATGINSRR-------GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALV 444 V+ A G+ R D I++ +DF + + I+ + A + Sbjct: 400 VATACGLRENRKDESVRLEDNISVAFVDFYTEPQ--AEAPGGTMDQIMRSPLTPWLLAFL 457 Query: 445 FLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSS 504 ++ LL +L + + + + T + + I ++ Sbjct: 458 VVLIILLAWWLM----------------QRRERRRAEEEAEEAGIDT--LIQEEIRVEDL 499 Query: 505 NQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + S + +I + +I N E A++L+ W E Sbjct: 500 IETGLSPEEKERRKIREE--------IDRIINENPEIAAQVLKTWLAEE 540 >gi|117624078|ref|YP_852991.1| flagellar M-ring protein [Escherichia coli APEC O1] gi|115513202|gb|ABJ01277.1| Flagellar M-ring protein [Escherichia coli APEC O1] Length = 333 Score = 315 bits (808), Expect = 1e-83, Method: Composition-based stats. Identities = 93/317 (29%), Positives = 155/317 (48%), Gaps = 12/317 (3%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + LI+A V +M+ A + +P Y L+ L D I L++ Sbjct: 13 WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 71 NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247 AI HLV++AV L G+VT++D G LLT +N R++ L ++ I+ I Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303 L+ +G N + V A+L+ +++ E Y P+ RS +L ++++S + P Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307 Query: 304 SAVTVEQNMPHVSDRKV 320 N P ++ Sbjct: 308 GVPGALSNQPAPANNAP 324 >gi|256833241|ref|YP_003161968.1| flagellar M-ring protein FliF [Jonesia denitrificans DSM 20603] gi|256686772|gb|ACV09665.1| flagellar M-ring protein FliF [Jonesia denitrificans DSM 20603] Length = 534 Score = 315 bits (808), Expect = 1e-83, Method: Composition-based stats. Identities = 120/556 (21%), Positives = 224/556 (40%), Gaps = 34/556 (6%) Query: 3 ILDQLLQFFKSGTSLGR-----TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEV 57 + Q+ F S R R L L + V + L +A + P LY L Sbjct: 1 MPQQITNVFTRLFSAIREFTVAQRTLALIGLAGVIVAL-VALAMWATRPQMQPLYTDLAP 59 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 +D I L+ + +++++ GS+I VPS V R+ +A+ G+ S S+ GY L D Sbjct: 60 ADAAAIVDQLAANGVQYQLTNGGSTILVPSGQVYDQRLKVASSGI-SPSAEGGYSLLD-N 117 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 + F Q +T RALEGEIA+TI +++GI A V + MP+ F A PTASV + Sbjct: 118 MGMTSSDFQQNVTYKRALEGEIAKTITAMNGIEVASVQLAMPEDTVFVSQSADPTASVFV 177 Query: 178 RAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ 235 + AI V+AAV + + +V V+DS G++L+A G +L Q Sbjct: 178 KPKAGVTLADDQVAAITQFVSAAVEGMKVENVAVIDSDGQVLSA-MGGSGTHGTNLKETQ 236 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 + I ++ L LG +V AEL+ D + YD + + Sbjct: 237 QYEQRIAASLQGMLDRILGNGMAVVSVTAELDFDATERVSESYDSNEDALPLTERETTEE 296 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 + T + + + VP ++ N + N ++ + + Sbjct: 297 YTGTGNAAGVLGPD-------NIAVPEGQTDGNYTNTSSERNNAVDKTTERIVTAPGTVR 349 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 R S++V V++ Q + ++ +V+AA GI+ RGDT+T+T M F + Sbjct: 350 RQSVSVAVDQ------------QAAATININDLQAMVTAAAGIDEERGDTVTVTRMAFDD 397 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + + + + + + LV+ + L + + +V Sbjct: 398 TTAQAAAEALTAAEAEAAEAAQMEMYRNLGIAAIALVSIIALSIVAAARRRRNRMPQQVE 457 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 +++ + V + L+ + + ++ + + +Q ++ + Sbjct: 458 QEALDLGEVELAPVPAYNAAAELEQLEFPEMPELPAAPDDKA-LRAEKKRQD---VVTLA 513 Query: 536 EINEERFAKILRKWAR 551 + + ++ A+IL +W Sbjct: 514 DEDPKQMAEILNEWIS 529 >gi|283955204|ref|ZP_06372705.1| flagellar M-ring protein [Campylobacter jejuni subsp. jejuni 414] gi|283793241|gb|EFC32009.1| flagellar M-ring protein [Campylobacter jejuni subsp. jejuni 414] Length = 560 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 115/565 (20%), Positives = 223/565 (39%), Gaps = 26/565 (4%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPI---MLFMAARFFVNSPHYDNLYVKLEVS 58 + Q+ Q +++ T R I V++ + LF + N+ Y L + S Sbjct: 5 NMFHQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRGSGGNANN-GYAVLVENVSPS 63 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 I L + NI +++ + I VP V + R+ +A++GL S G+E FD Sbjct: 64 SSAAIVAKLEQNNIPYKLESE-NKILVPQDQVYRQRMFIASEGLIKDSR-VGFEAFD-TQ 120 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178 +FG TS Q++ RA+EGE+ARTI+++ I A VHI P F + PTASV++ Sbjct: 121 AFGATSEEQKVKYQRAIEGELARTIETLEPIRNAVVHIAFPKDSVFTERQIPPTASVVVN 180 Query: 179 AINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQ 235 K + I+++V+AAVP L +V + D +G L E E +++ + Sbjct: 181 VREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIKFKS 240 Query: 236 AIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 + +E I + LA F G+D + +V + + Q+ + +YDP+ V L+++ Sbjct: 241 DQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLNEEK 300 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 + + + N+ V + ++ K + +N E++ + Sbjct: 301 TGRKDPEIQGVPGAVSNIGPV--EGLDNKGQIDTYKKNQVTTNNELSKTITNIKKQFATV 358 Query: 355 ERLSIAVVVNKGRL----TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 R S AV ++ +S LA + IV ++ RGD++ + + Sbjct: 359 LRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEELASVESIVKNTINFSATRGDSVVVQN 418 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 + F + V+ +R I + + + +L+ + Sbjct: 419 LPFHRESIRVESKVKT----FYNRFVEPFIPPVKYFIAAILLFIFYKKVIAPFTQKML-- 472 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 + + + P + N A + + + I V + + Sbjct: 473 EDVAAQEEMQQGPSAVLDDAEDALEKFNAARKKVEEQLGFGDNFNEDSIQYEVLLE---K 529 Query: 531 LLHMIEINEERFAKILRKWARSEIE 555 L ++ E A +L+ +++ E Sbjct: 530 LRGLVSDKGEEIAALLQNLIQNDSE 554 >gi|229544393|ref|ZP_04433451.1| flagellar M-ring protein FliF [Bacillus coagulans 36D1] gi|229324878|gb|EEN90555.1| flagellar M-ring protein FliF [Bacillus coagulans 36D1] Length = 529 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 115/568 (20%), Positives = 214/568 (37%), Gaps = 65/568 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L F+KS + +T I S + + ++L +F+ Y LY L+VS+ I Sbjct: 9 FQNLKGFWKSRSKKQKT---IGISAVALMLVLAAGITYFMTKTKYAPLYSGLDVSETGSI 65 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L + + +I+D G +I VP V ++ LAA+GLP + S Y F + FG+T Sbjct: 66 KDELDQEGVPSKITDGGKTIEVPEDQVDDLKVTLAAKGLPKTGS-IDYSFFSQNAKFGMT 124 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI-GARPTASVMIRAINP 182 + ++ A++ E+ I+ + G+ A+V I +P+ F A+ +ASV++ Sbjct: 125 DNEFNVVKLDAMQTELENLIEQMDGVEKAKVMINLPNQSVFVADSQAKASASVVLTLKPG 184 Query: 183 --SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL--LTANEMERNILGKSLSIVQAIQ 238 +A+ +LV+ +VPNL ++ +++ + L ++ N + +I + I+ Sbjct: 185 YELDQNQIKAVYNLVSKSVPNLPTDNIVIMNQNFEYYDLNSSNSSGNAYTQQQAIKKQIE 244 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-DSKVERSIRLSKDAQRS 297 +I+ + L+ +G V A+++ ++ E + +P D + I +S + Sbjct: 245 RDIQQQVQTMLSTLMGAGKAVVTVTADIDFTQEKREEDLVEPVDKTNMKGIEISAKKIQE 304 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENT-DKKEEQSNYEINTKSIATTHDNYKLER 356 +A + T K + NYE+N T YK+ Sbjct: 305 TYQGTGAAAGTPSGSTDSVGSSYVSGSNGNGTYSKTSDTINYEVNRIKRKITESPYKIRD 364 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT--GINSRRG---------DT 405 L I V+V E R+ S L +I ++S I+ G D Sbjct: 365 LGIEVMV------EPPVRTKRSSLPASRLKDIKSMLSTIVRTSIDKSSGTRLTNQTVADK 418 Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465 I ++ F N + + + I + LV L+ F+ Sbjct: 419 IAVSVQPFAANAPEKAKKASIPWW-------VYAIGGGLLLVIAGLIFFMIR-------- 463 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 + + + + P A N+ D+S Sbjct: 464 -NRRRAASEAEEEMAEETPEKPAPPRIPDVNEEQETDASA-------------------- 502 Query: 526 QSDLRLLHMIEINEERFAKILRKWARSE 553 +L M + + FAK+LR W E Sbjct: 503 -RRKQLEKMAKEKPDEFAKLLRSWLSEE 529 >gi|254255067|ref|ZP_04948384.1| Flagellar biosynthesis/type III secretory pathway lipoprotein [Burkholderia dolosa AUO158] gi|124899712|gb|EAY71555.1| Flagellar biosynthesis/type III secretory pathway lipoprotein [Burkholderia dolosa AUO158] Length = 537 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 113/562 (20%), Positives = 214/562 (38%), Gaps = 39/562 (6%) Query: 3 ILDQLLQFFKSGTSLGRT-------RILILASVILVPIMLFMAARFFVNSPHYDNLYVKL 55 +L+Q+ G L+ V+ + + + L+ Sbjct: 1 MLNQVKAALSRAMPSGMRLPSSASLMKLMPLVVLAICVTALAMMVMHHRDTRFKPLFGSQ 60 Query: 56 EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115 E + L I +RI + VP S +G R+ LAA+G+ + +G + D Sbjct: 61 ESISAADMMTVLETEGIPYRIHPESGQVLVPESQLGATRMLLAAKGVV-AKLPAGLDQVD 119 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTAS 174 K + G++ F+Q++ R LEGE+ R+I S+ + +ARVH+ + SF G + +AS Sbjct: 120 KSDPLGVSQFVQDVRFRRGLEGELVRSIVSVEPVESARVHLSVAKSSSFILADGDKSSAS 179 Query: 175 VMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS 232 V++ K AI LVA +V NLD VTV+D G L+A + Sbjct: 180 VVLTLKQGRTLKKDQISAIVALVAGSVANLDPSRVTVVDQAGNHLSALIDPDSAAATDGE 239 Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292 I+ E NI + L LG NFR++V AE++ D + Y KV + Sbjct: 240 FGARIREETLRNIRELLLPTLGDGNFRASVTAEIDHDRVEETRERYGDTPKVM------Q 293 Query: 293 DAQRSETSQPESAVTVEQNMP--HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 +A R E ++AV V ++ ++ + + + + + + + Sbjct: 294 EATRDERDGAQAAVGVPGSLSNRPIAPPAASQTADAQQSGRNAQTRQFAYDRNVVKIKRS 353 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 +L+RL++AVV+N + + I+ ++ GI+ R D + +++ Sbjct: 354 PARLKRLNVAVVINNAAAPG-----GAKAWTPEQIERIDAVLRNGLGIDGARDDALVVSA 408 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 +DF + + ++ + V L + L L ++ A Sbjct: 409 LDFRAPPAVETLP-----WWKQPDNIVSMATWGGYAVAALSIFLFVLRPLIKILREWVAG 463 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 + V PP+++ + + + L + L+ Sbjct: 464 REPV--------PPVATDAQQPADEPAPGSGNGLRAAMLPEDATLPPVGSDVDVLADHLK 515 Query: 531 LLHMIEINEERFAKILRKWARS 552 ++ ER A++++ W R Sbjct: 516 --NLAHDAPERVAEVIKPWIRK 535 >gi|283955743|ref|ZP_06373234.1| flagellar M-ring protein [Campylobacter jejuni subsp. jejuni 1336] gi|283792698|gb|EFC31476.1| flagellar M-ring protein [Campylobacter jejuni subsp. jejuni 1336] Length = 560 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 115/565 (20%), Positives = 225/565 (39%), Gaps = 26/565 (4%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPI---MLFMAARFFVNSPHYDNLYVKLEVS 58 + Q+ Q +++ T R I V++ + LF + N+ Y L + S Sbjct: 5 NMFHQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRGSGSNANN-GYAVLVENVSPS 63 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 I L + NI +++ + I VP V + R+ +A++GL S G+E FD Sbjct: 64 SSAAIVAKLEQNNIPYKLESE-NKILVPQDQVYRQRMFIASEGLIKDSR-VGFEAFD-TQ 120 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178 +FG T+ Q++ RA+EGE+ARTI+++ I +A VHI P F + PTASV++ Sbjct: 121 AFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASVVVN 180 Query: 179 AINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQ 235 K + I+++V+AAVP L +V + D +G L E E +++ + Sbjct: 181 VREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIKFKS 240 Query: 236 AIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 + +E I + LA F G+D + +V + + Q+ + +YDP+ V L+++ Sbjct: 241 DQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLNEER 300 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 + + + N+ V + ++ K + +N E++ T + Sbjct: 301 TGRKDPEIQGVPGAVSNIGPV--EGLDNKGQIDTYKKNQVTTNNELSKTITNTKKQFATV 358 Query: 355 ERLSIAVVVNKGRL----TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 R S AV ++ +S LA + IV ++ RGD++ + + Sbjct: 359 LRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEELASVESIVKNTINFSATRGDSVVVQN 418 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 + F + V+ +R I + + + +L+ + Sbjct: 419 LPFHRESIRVESKVKT----FYNRFIEPFIPPVKYFIAAILLFIFYKKVITPFTQKML-- 472 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 + + + P + N A + + + I V + + Sbjct: 473 EDVAAQEEMQQGPNAVLDDVEDTLEKMNAARKKVEEQLGFGDNFNEDSIQYEVLLE---K 529 Query: 531 LLHMIEINEERFAKILRKWARSEIE 555 L ++ E A +L+ +++ E Sbjct: 530 LRGLVSDKSEEIAALLQNLIQNDSE 554 >gi|262273540|ref|ZP_06051354.1| flagellar M-ring protein FliF [Grimontia hollisae CIP 101886] gi|262222518|gb|EEY73829.1| flagellar M-ring protein FliF [Grimontia hollisae CIP 101886] Length = 548 Score = 315 bits (806), Expect = 2e-83, Method: Composition-based stats. Identities = 120/545 (22%), Positives = 228/545 (41%), Gaps = 32/545 (5%) Query: 21 RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80 R + L I V + + + + Y LY + E D N++ AL + D+ + Sbjct: 26 RTVALLGTIAVAVAVAVVLGLW-QGGEYRPLYGEQEQYDRNQVIAALEQNRFDYYVEPQK 84 Query: 81 SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140 +I V S V ARI +AA G+ + +G E+ +K + G + F++ LEGE+A Sbjct: 85 GNIMVERSQVAAARIAMAAAGI-EAKVPAGLEILNKDFALGTSQFIENARYRHGLEGELA 143 Query: 141 RTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRAINPSVY--KSAEAIRHLVAA 197 R+I ++ G+ ARVH+ +P F + P+ASV++ V + AI +LVA Sbjct: 144 RSIMTLDGVSNARVHLALPKQTLFVGRNKELPSASVVVVLTPGRVLHSDNIAAIVNLVAG 203 Query: 198 AVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSLSIVQAIQHEIEMNINKALAAF 252 +VP+L V V+D G LL+ + +G + LS Q ++ E + K L Sbjct: 204 SVPDLQADRVNVIDQHGNLLSNQIGQGTGIGELGNSQYLSYTQKLEAEYIESAAKMLRPM 263 Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN- 311 +GV+NF+ V A +N D + E Y P V + + E PE + N Sbjct: 264 VGVNNFQVEVAASVNFDRVEATEESYGPKGTVRNEFSSFDNEGQKE---PEGVPGTQSNR 320 Query: 312 MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV 371 +P + + K+ Y ++ + +ERL+++V++N Sbjct: 321 LPEGKEDGDGTLVNKRGESSKD----YAVDRTLKHIKYQQGSVERLTVSVLLNGEA---- 372 Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDI 431 + D+ I ++ A G++ RGD +++ F + + +MD Sbjct: 373 ------ESFSDAQRENIRTMLIDALGLDEARGDKLSLFVHPFNTDAPELLASTPSWWMDN 426 Query: 432 LSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTT 491 + + I L +V +++ + A+R L + +++ G + + + Sbjct: 427 IWLDYLRYI--LSAVVSLVILLVVIRPAVRALAQQNASRETVNAGANEGTLSRTVAGEFV 484 Query: 492 GLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWAR 551 G + + + S + +L + + S L++ + E ER A ++++W Sbjct: 485 GGSTDMAVGSEGSKTPAMNDMPDLPTPETGLEGQSSYLQM--LSEREPERVAHVVKQWMT 542 Query: 552 SEIED 556 + D Sbjct: 543 PKNAD 547 >gi|71281873|ref|YP_268244.1| flagellar MS-ring protein [Colwellia psychrerythraea 34H] gi|71147613|gb|AAZ28086.1| flagellar M-ring protein FliF [Colwellia psychrerythraea 34H] Length = 563 Score = 315 bits (806), Expect = 2e-83, Method: Composition-based stats. Identities = 100/570 (17%), Positives = 205/570 (35%), Gaps = 33/570 (5%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 I +Q F S S+ R + + + + + + + N P Y + KL + Sbjct: 10 GIGEQKSGFAASLGSVDILRQVTIVVALAICLAIAVFVIMLANEPEYRVI-SKLPTKQLI 68 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 L ++++ +N +ISVP+ ++ LA +GL + + G ++ K FG Sbjct: 69 TTMDFLDANQVEYQQENN--TISVPADEYQNVKLLLAREGL-TDEPSQGEDILMKDMGFG 125 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 ++ ++ E +IA+TI+ + I A+V + +P F + P+A+V++ Sbjct: 126 VSQRLERERLKFGREQQIAKTIEQLKSISRAKVLLAIPRENIFARREKNPSATVVLTMQR 185 Query: 182 P--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAI 237 + +A+ +VA+AV L VTV D G+LL + + + K I Q Sbjct: 186 GKILSEEEVDAVVDIVASAVQGLTPNRVTVTDQNGRLLNSGSQDSISSRSRKEFEIEQKR 245 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + E I+ L +G+ N+ + V ++ + + Y+ D RS + Sbjct: 246 EQEYMEKIDSILIPVVGLGNYTAQVDITMDFTNVEETQRRYNSDLPALRSEMSVESTNIG 305 Query: 298 ETSQPESAVTVEQNMPHVS-----DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 N P ++ D RS+ + E NYE++ T Sbjct: 306 --GALGGIPGALTNQPPIASAIPEDATGGQKRSMPSRKHSESTKNYELDEAISHTKQQAG 363 Query: 353 KLE--------RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD 404 + V + + A I +++ + G + +RGD Sbjct: 364 VVRRVSVSVALDYVAGVATTPVEGGANTPAATFAPRSAGETASIRRLLQGSIGFDLQRGD 423 Query: 405 TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 + + ++ F + + + V+ ALV +V L V L+RL Sbjct: 424 VLEVVTIPFNRPDYGVVAEIPIWQQPWFIKVLKLVLGALVIIVLILAV---VRPMLKRLI 480 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 + + G KS+ + L + + D +L + Sbjct: 481 YPEQT-PDDYGDKSLDGHIDLGDETMDMLTSDFDAGAVGFAADGSLQLPDL------HRD 533 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEI 554 + + ++ E +++++ W + Sbjct: 534 EDVLKAVRALVANEPELSSQVVKSWLNEDE 563 >gi|157414615|ref|YP_001481871.1| flagellar MS-ring protein [Campylobacter jejuni subsp. jejuni 81116] gi|157385579|gb|ABV51894.1| flagellar M-ring protein [Campylobacter jejuni subsp. jejuni 81116] gi|307747255|gb|ADN90525.1| Flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni M1] gi|315931604|gb|EFV10570.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni 327] Length = 560 Score = 315 bits (806), Expect = 2e-83, Method: Composition-based stats. Identities = 116/565 (20%), Positives = 225/565 (39%), Gaps = 26/565 (4%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPI---MLFMAARFFVNSPHYDNLYVKLEVS 58 +L Q+ Q +++ T R I V++ + LF + N+ Y L + S Sbjct: 5 NMLHQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRGSGSNANN-GYAVLVENVSPS 63 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 I L + NI +++ + I VP V + R+ +A++GL S G+E FD Sbjct: 64 SSAAIVAKLEQNNIPYKLESE-NKILVPQDQVYRQRMFIASEGLIKDSR-VGFEAFD-TQ 120 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178 +FG T+ Q + RA+EGE+ARTI+++ I +A VHI P F + PTASV++ Sbjct: 121 AFGATNEEQRVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASVVVN 180 Query: 179 AINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQ 235 K + I+++V+AAVP L +V + D +G L E E +++ + Sbjct: 181 VREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIKFKS 240 Query: 236 AIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 + +E I + LA F G+D + +V + + Q+ + +YDP+ V L+++ Sbjct: 241 DQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLNEER 300 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 + + + N+ V + ++ K + +N E++ T + Sbjct: 301 TGRKDPEIQGVPGAVSNIGPV--EGLDNKGQIDTYKKNQVTTNNELSKTITNTKKQFATV 358 Query: 355 ERLSIAVVVNKGRL----TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 R S AV ++ +S LA + IV ++ RGD++ + + Sbjct: 359 LRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEELASVESIVKNTINFSATRGDSVVVQN 418 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 + F + V+ +R I + + + +L+ + Sbjct: 419 LPFHRESIRVESKVKT----FYNRFVEPFIPPVKYFIAAILLFIFYKKVIAPFTQKML-- 472 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 + + + P + N A + + + I V + + Sbjct: 473 EDVAAQEEMQQGPNAVLDDAEDALEKFNAARKKVEEQLGFGDNFNEDSIQYEVLLE---K 529 Query: 531 LLHMIEINEERFAKILRKWARSEIE 555 L ++ E A +L+ +++ E Sbjct: 530 LRGLVSDKGEEIAALLQNLIQNDSE 554 >gi|57237369|ref|YP_178382.1| flagellar MS-ring protein [Campylobacter jejuni RM1221] gi|86153720|ref|ZP_01071923.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni HB93-13] gi|57166173|gb|AAW34952.1| flagellar M-ring protein FliF [Campylobacter jejuni RM1221] gi|85842681|gb|EAQ59893.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni HB93-13] gi|315057739|gb|ADT72068.1| Flagellar M-ring protein fliF [Campylobacter jejuni subsp. jejuni S3] Length = 560 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 116/565 (20%), Positives = 226/565 (40%), Gaps = 26/565 (4%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPI---MLFMAARFFVNSPHYDNLYVKLEVS 58 +L Q+ Q +++ T R I V++ + LF + N+ Y L + S Sbjct: 5 NMLHQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRGSGSNANN-GYAVLVENVSPS 63 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 I L + NI +++ + I VP V + R+ +A++GL S G+E FD Sbjct: 64 SSAAIVAKLEQNNIPYKLESE-NKILVPQDQVYRQRMFIASEGLIKDSR-VGFEAFD-TQ 120 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178 +FG T+ Q++ RA+EGE+ARTI+++ I +A VHI P F + PTASV++ Sbjct: 121 AFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASVVVN 180 Query: 179 AINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQ 235 K + I+++V+AAVP L +V + D +G L E E +++ + Sbjct: 181 VREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIKFKS 240 Query: 236 AIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 + +E I + LA F G+D + +V + + Q+ + +YDP+ V L+++ Sbjct: 241 DQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLNEER 300 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 + + + N+ V + ++ K + +N E++ T + Sbjct: 301 TGRKDPEIQGVPGAVSNIGPV--EGLDNKGQIDTYKKNQVTTNNELSKTITNTKKQFATV 358 Query: 355 ERLSIAVVVNKGRL----TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 R S AV ++ +S LA + IV ++ RGD++ + + Sbjct: 359 LRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEELASVESIVKNTINFSATRGDSVVVQN 418 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 + F + V+ +R I + + + +L+ + Sbjct: 419 LPFHRESIRVESKVKT----FYNRFVEPFIPPVKYFIAAILLFIFYKKVIAPFTQKML-- 472 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 + + + P + N A + + + I V + + Sbjct: 473 EDVAAQEEMQQGPNAVLDDAEDALEKFNAARKKVEEQLGFGDNFNEDSIQYEVLLE---K 529 Query: 531 LLHMIEINEERFAKILRKWARSEIE 555 L ++ E A +L+ +++ E Sbjct: 530 LRGLVSDKGEEIAALLQNLIQNDSE 554 >gi|241761170|ref|ZP_04759259.1| flagellar M-ring protein FliF [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374789|gb|EER64250.1| flagellar M-ring protein FliF [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 619 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 121/614 (19%), Positives = 236/614 (38%), Gaps = 91/614 (14%) Query: 2 AILDQLLQFFKS---GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 + +++ F + SL R++ L ++ + F +++P +LY + Sbjct: 36 KVYERVKDFVQQPAIKRSLPLMRLISLTAIGAL-------IWFLLSAPPQRDLYPGAGDA 88 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 D I+ AL I + I+ I+V KAR+ LA QGLP S+ + + Sbjct: 89 DRASIASALETGGIHYNINRGNGVITVSEKDYYKARMLLAQQGLPKSAPDGDH--VISSL 146 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178 G + ++ A E ++ARTI++I + ARVHI P F + TASVM++ Sbjct: 147 PLGASRAVEGERLRAAREVDLARTIETIDVVNQARVHIAEPQPSPFVREQVHGTASVMLK 206 Query: 179 AINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQ 235 + +AI++LVAA++P + V+V+D G LL+A + + +I + L + Q Sbjct: 207 LMTGRNLSNAQVQAIQNLVAASLPGMAPEAVSVVDQAGHLLSATSNADNDINDRQLRLQQ 266 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 ++ +NK L LG +N+ + V +L+ Q Y P RS S + Sbjct: 267 TLEARYMDALNKLLVPLLGENNYTAEVHTDLDFTESQATRESY-PKEGSLRSESGSWNKD 325 Query: 296 RSETSQPESAVTVEQNMPHVSDRKV----------------------------------- 320 Q NMP Sbjct: 326 GGPD-QNGGIPGAMSNMPPTPANPTQNPPPNLQPPAQPNNQQNAQNGQQGQNAQGQPNGQ 384 Query: 321 --------------PLPRSLENTDKKEEQSN--YEINTKSIATTHDNYKLERLSIAVVVN 364 P + + + E N YE+ + + ++R+S+A+ + Sbjct: 385 NAQQGQNARAPGSVPAETAQQAQARTSENFNRYYELGREVSVIRNPTGSVKRVSVAIALR 444 Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424 + + +A++ K++ A G ++ RGD + I+S DF+ +F+ Sbjct: 445 QINHG--------KPPSPEQVAQLEKLIKGAIGFDASRGDVVAISSSDFMGGSVFSMPWY 496 Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPP 484 Q S++ +L+R+ + LV L++ L+ + ++ L Sbjct: 497 QNSWVPLLARNLS------ALLVAALVIFGFARPFLKARAEAAERRRLAENPLPQLEQTN 550 Query: 485 ISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAK 544 I + + G P + + D+ + ++R++ + H ++ + R A Sbjct: 551 IDNLIAEGEQPAEEAGSQAITLDMIDAAPGYKARVDL---------VRHFVKQDPARAAL 601 Query: 545 ILRKWARSEIEDRY 558 ++ RS+++ Sbjct: 602 VVHDMMRSDLKSLE 615 >gi|182412248|ref|YP_001817314.1| flagellar M-ring protein FliF [Opitutus terrae PB90-1] gi|177839462|gb|ACB73714.1| flagellar M-ring protein FliF [Opitutus terrae PB90-1] Length = 530 Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats. Identities = 131/507 (25%), Positives = 219/507 (43%), Gaps = 23/507 (4%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L LL+ +K LG + + L L + + + P Y LY +L D I Sbjct: 5 LQSLLELWK---QLGLNQRVSLVVAALAVVAGLITVVLWSRRPDYQLLYARLSEKDAASI 61 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L NI ++ G+++ VPS V K R+ LA++GLP S G+E+FDK FGL+ Sbjct: 62 IGQLQTQNIPHIVTAGGTAVQVPSDQVYKLRMDLASKGLP-SGDGVGFEIFDKGQ-FGLS 119 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA-RPTASVMIRAINP 182 F+Q +RA++GE+ARTI + G+ AARV IV P+ + + TASV + Sbjct: 120 DFVQRTNYLRAVQGELARTIMQLQGVRAARVMIVQPENRLLLTDQSVKSTASVFVDVGGK 179 Query: 183 SV-YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAIQ 238 + AIRHLVA AV L V V+D+ G +L+ + + Q ++ Sbjct: 180 RLETDQVNAIRHLVANAVQGLAPDQVAVVDNRGHVLSEELKQDPTLGTASSQIRYRQQVE 239 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS- 297 + LAA +G N V AE++ + I E +DP+ +V R+ +++D S Sbjct: 240 DYFAKKVETMLAAVIGPGNAVVRVSAEIDTEAVAITEERFDPEGQVVRTQTVTEDTSSSA 299 Query: 298 ETSQPESAVTVEQNMPHVSDR-KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 E+ V V N+P + + P S +K + YEIN ++ TT + ++ Sbjct: 300 ESRSAGGVVGVSANVPEKNPGTEAARPVSNTEQSRKNRSTTYEINRTTLNTTRNPGSVKN 359 Query: 357 LSIAVVVNK---GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI-TITSMD 412 L+ AV V Q + L + ++V A G+ G ++ T+ S+ Sbjct: 360 LTAAVFVAPRLAAPAAAGAAPGEPQRRSAEELNALRQLVVNALGLKIPAGQSLDTVVSLQ 419 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFL-----VGTLLVTFLGLHALRRLHNID 467 Q Q++ ++ +R + ++ LV + L R+ Sbjct: 420 ETPFQSAEEIPAQIAAIEQENRWQGWIEAGSRWIAVVAAAAVFLVFWRMLR--RQKPEPV 477 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLM 494 + + ++ P S+ VT L+ Sbjct: 478 PIEVLSLSPEAATRSLPTSNGVTPDLL 504 >gi|86151498|ref|ZP_01069713.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni 260.94] gi|85841845|gb|EAQ59092.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni 260.94] Length = 560 Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats. Identities = 116/565 (20%), Positives = 226/565 (40%), Gaps = 26/565 (4%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPI---MLFMAARFFVNSPHYDNLYVKLEVS 58 +L Q+ Q +++ T R I V++ + LF + N+ Y L + S Sbjct: 5 NMLHQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRGSGSNANN-GYAVLVENVSPS 63 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 I L + NI +++ + I VP V + R+ +A++GL S G+E FD Sbjct: 64 SSAAIVAKLEQNNIPYKLESE-NKILVPQDQVYRQRMFIASEGLIKDSR-VGFEAFD-TQ 120 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178 +FG T+ Q++ RA+EGE+ARTI+++ I +A VHI P F + PTASV++ Sbjct: 121 AFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASVVVN 180 Query: 179 AINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQ 235 K + I+++V+AAVP L +V + D +G L E E +++ + Sbjct: 181 VREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIKFKS 240 Query: 236 AIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 + +E I + LA F G+D + +V + + Q+ + +YDP+ V L+++ Sbjct: 241 DQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLNEER 300 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 + + + N+ V + ++ K + +N E++ T + Sbjct: 301 TGRKDPEIQGVPGAVSNIGPV--EGLDNKGQIDTYKKNQVTTNNELSKTITNTKKQFATV 358 Query: 355 ERLSIAVVVNKGRL----TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 R S AV ++ +S LA + IV ++ RGD++ + + Sbjct: 359 LRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEELASVESIVKNTINFSATRGDSVVVQN 418 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 + F + V+ +R I + + + +L+ + Sbjct: 419 LPFHRESIRVESKVKT----FYNRFVEPFIPPVKYFIAAILLFIFYKKVIAPFTQKML-- 472 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 + + + P + N A + + + I V + + Sbjct: 473 EDVAAQEEMQQDPNAVLDDAEDALEKFNAARKKVEEQLGFGDNFNEDSIQYEVLLE---K 529 Query: 531 LLHMIEINEERFAKILRKWARSEIE 555 L ++ E A +L+ +++ E Sbjct: 530 LRGLVSDKGEEIAALLQNLIQNDSE 554 >gi|134300247|ref|YP_001113743.1| flagellar MS-ring protein [Desulfotomaculum reducens MI-1] gi|134052947|gb|ABO50918.1| flagellar M-ring protein FliF [Desulfotomaculum reducens MI-1] Length = 521 Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats. Identities = 134/563 (23%), Positives = 238/563 (42%), Gaps = 60/563 (10%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +L++L Q ++ TS R ++IL S +++ ++++A P+Y L LE D Sbjct: 6 LLERLKQRWQE-TSQNRKVLVILVSTVVLAGLVYLAMTL--TKPNYAILLGDLEPKDAGD 62 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L I +++ D G++I VP V + R+ LA+ GL + +G+ELFDK + FG Sbjct: 63 IVAQLESEKIPYQLIDQGTTILVPQEQVDEIRVKLASDGL-LTGVGNGFELFDK-SKFGE 120 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T F Q+I+ RAL+ E+ RTI + G+ ARVH+V+P F + +ASV+++ Sbjct: 121 TDFEQQISYQRALQEELRRTITKVEGVEQARVHLVLPRKSVFIEEEGTASASVVVKLKPR 180 Query: 183 SVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----------ANEMERNILGKS 230 + K + + L+ +V L +V ++D+ G +L N IL + Sbjct: 181 AKLKAEQVKGLNDLIIGSVEGLQAENVHIIDTEGNVLNDFLKDSSGTPGNGFSGTILERQ 240 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV-ERSIR 289 I + + E+E + LA LG + + V AE++ + Q P V ERSI+ Sbjct: 241 QQIRRTYEKELENRVQNMLAKVLGPNKAVAMVTAEMDFNQLQTNTTEVVPGQVVSERSIK 300 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 + Q++P S + K ++ NY+ T++ + Sbjct: 301 EQGSDGSGGGVTGSTTQMPGQSIP------AETSTSQNSYIKTDDTKNYQHGTRTQSEVQ 354 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 KL +LS AVV+++ ++ KIV+AA G + +RGD IT++ Sbjct: 355 APGKLIKLSTAVVLDESVKNLDR-------------TQVEKIVTAAIGFDDQRGDQITVS 401 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 +M F +Q + + + T+ + L+ LL+ L R+ Sbjct: 402 AMTFDRSQYDLDQDLPDNSQKEKELFYMTIAAVVGGLLLLLLLVAYWLRRRRK------N 455 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 + E+ +P PI S T +++ K Sbjct: 456 AEQELQVIEETTPMPIESVTTK-----------------EEEEEEEEAQWEIPPPKDKQK 498 Query: 530 RLLHMIEINEERFAKILRKWARS 552 +L + + + A +L+ W R Sbjct: 499 QLKELAQERPDDIASVLKVWLRE 521 >gi|255523704|ref|ZP_05390670.1| flagellar M-ring protein FliF [Clostridium carboxidivorans P7] gi|296186708|ref|ZP_06855110.1| flagellar M-ring protein FliF [Clostridium carboxidivorans P7] gi|255512573|gb|EET88847.1| flagellar M-ring protein FliF [Clostridium carboxidivorans P7] gi|296048745|gb|EFG88177.1| flagellar M-ring protein FliF [Clostridium carboxidivorans P7] Length = 529 Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats. Identities = 111/569 (19%), Positives = 215/569 (37%), Gaps = 59/569 (10%) Query: 4 LDQLLQFFKSG----TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 + +L Q FK+ L + + + + I + + S YD L+ + +D Sbjct: 1 MGKLSQVFKNLIEKWKGLSKKKKIAFGIIFTAVIGALIYLGIYFGSTKYDVLFSNMSSTD 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + L +D ++ G+SI VP V K R+ + ++ + ++ + G+EL DK Sbjct: 61 SAAVYKQLQADKVDAKVQ--GNSILVPKGQVDKLRMQMLSE-VNMTNGSQGFELLDKT-K 116 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 G T +I RAL+GE+ RTI+ + I ARV +V+PD F K +ASV ++ Sbjct: 117 LGSTDAEMKINYQRALQGELERTIKGLPEIQNARVSLVLPDDTQFVKDTQPGSASVTLQM 176 Query: 180 INPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---------EMERNILG 228 +A+ LV+ +V N+ +V ++D LL+ + Sbjct: 177 KQGQKLNSDQVKALVALVSGSVKNVPKENVQIIDDKLALLSKDLFNDKKDITSDSTTSAE 236 Query: 229 KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288 K + Q + E+E ++ L A G D + V A+L+ D Q YDP +S+ Sbjct: 237 KQQELKQQYEKELEKKLSNMLEAVYGKDKVKVKVNADLDFDAVQQDSTTYDP-----KSV 291 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 +S+ + ++ + T + + ++ E NY+++ T Sbjct: 292 VVSEHNVKDTSTGGQGTATSSSPVDNNMTNTTTNNTGNGSSTHDESTKNYDVSEVKQKTI 351 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 ++RL+ +V ++ I+ + +A G +++RGDTI + Sbjct: 352 KAPGAVKRLTASVALDGNVDPTTK-------------TSISNLAVSAIGYDAKRGDTINV 398 Query: 409 TSMDF---LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465 + F L++Q D + ++ L L +L + L RR Sbjct: 399 EGIPFDTTLKDQAKKDLDAMNKATDQAKKTKTYIM--LGILAAVILGAAVALFLWRRKKR 456 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 ++ + I T + L+S N+ + Sbjct: 457 EEEEDLFDEETGGIDVIVGDEMEPTKQQFKYKPVDLESENEQTHVENE------------ 504 Query: 526 QSDLRLLHMIEINEERFAKILRKWARSEI 554 + + + E+ A I++ W + Sbjct: 505 -----IKNYAKEKPEQVADIVKSWLAEDE 528 >gi|57168454|ref|ZP_00367588.1| flagellar M-ring protein FliF [Campylobacter coli RM2228] gi|305432873|ref|ZP_07402031.1| flagellar M-ring protein FliF [Campylobacter coli JV20] gi|57020262|gb|EAL56936.1| flagellar M-ring protein FliF [Campylobacter coli RM2228] gi|304444027|gb|EFM36682.1| flagellar M-ring protein FliF [Campylobacter coli JV20] Length = 560 Score = 313 bits (802), Expect = 5e-83, Method: Composition-based stats. Identities = 115/565 (20%), Positives = 223/565 (39%), Gaps = 26/565 (4%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPI---MLFMAARFFVNSPHYDNLYVKLEVS 58 +L Q+ Q +++ T R I V++ + LF + N+ Y L ++ S Sbjct: 5 NMLHQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRGSGSGANN-GYAVLVDNVDPS 63 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 I L + N+ + + I VP V + R+ +A++GL S G+E FD Sbjct: 64 SSAAIVAKLEQNNVPYILESESK-ILVPQDQVYRQRMFIASEGLIKDSR-VGFEAFD-TQ 120 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178 SFG T+ Q + RA+EGE+ARTI+++ I +A VHI P F + PTASV++ Sbjct: 121 SFGATNEEQRVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASVVVN 180 Query: 179 AINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQ 235 K + I+++V+AA+P L +V + D +G L E E +++ + Sbjct: 181 VREGLKLTRKQIDGIKNIVSAAIPKLTKENVRISDQSGVPLDEQEAYEDDLVRAQIKYKS 240 Query: 236 AIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 + +E I + LA + G D R +V + + Q+ + +YDP+ V L+++ Sbjct: 241 DQERALEDKIIETLAPYAGGTDKVRVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLNEER 300 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 + + + N+ V + ++ K + +N E++ T + Sbjct: 301 TGRKEPEIQGVPGAVSNIGPV--EGLDNKGQIDTYKKNQVTTNNELSKTITNTKKQFATV 358 Query: 355 ERLSIAVVVNKGRL----TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 R S AV ++ +S LA + IV ++ RGD++ + + Sbjct: 359 VRTSAAVTIDGKYQDVVDENGDVKSEYVPLSKEELASVESIVKNTINYSANRGDSVVVQN 418 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 + F + V+ R I + +++ +L+ + Sbjct: 419 LPFHRESIRVESKVKT----FYGRFIEPFIPPVKYIIAAILLFIFYKKVIAPFTQKML-- 472 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 + + + P + N A + + + I V + + Sbjct: 473 EDVAAQEEVQQGPNAVLDDAEDALEKFNAARKKVEEQLGFGENFNEDSIQYEVLLE---K 529 Query: 531 LLHMIEINEERFAKILRKWARSEIE 555 L ++ E A +L+ +++ E Sbjct: 530 LRGLVSDKSEEIAALLQNLIQNDTE 554 >gi|284989556|ref|YP_003408110.1| flagellar M-ring protein FliF [Geodermatophilus obscurus DSM 43160] gi|284062801|gb|ADB73739.1| flagellar M-ring protein FliF [Geodermatophilus obscurus DSM 43160] Length = 527 Score = 313 bits (802), Expect = 5e-83, Method: Composition-based stats. Identities = 110/555 (19%), Positives = 227/555 (40%), Gaps = 39/555 (7%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 A+ + + + ++ + +++ + ++ ++ +P Y L+ L +D + Sbjct: 4 ALAGPVERIRSALATISLGQKVVIGLLTAGLLLGGFFFYRWITAPTYAPLFSNLASTDAS 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L+ A + ++D G +I VP+ V R+ ++ +GLP + +++GY L D+ Sbjct: 64 AIVDELNAAGAAYELADGGGTIMVPNEQVYDLRLSMSGKGLP-AGNDTGYALLDE-QGIT 121 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 + F Q++T RAL+ E+ART++S+ G+ A VH+ +P+ F A PTASV++ Sbjct: 122 TSEFQQQVTYQRALQDELARTLESLEGVRTAVVHLALPEEEVFASDEAEPTASVLLDLAP 181 Query: 182 --PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAI 237 +A+ +LV++++ +D VTV D+TG +L+A + Q Sbjct: 182 GTGLDSGQVQAVTNLVSSSIEGMDPEQVTVADATGAVLSAPGQGVTSAAGDARSQLEQDY 241 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + + N L LG + +V A++++D + + + E + +S+ Sbjct: 242 EARLASNAQAVLDPILGPGRAKVSVRADVDLDQRSTTSETHTYE---EGTPPISESTTTE 298 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 E + +AV + +D S +K+ +N + T ++ RL Sbjct: 299 EYTGNGAAVGGILGPENQADAGGGTGDSA--YNKESTTANNAVGTTVETVEGAPGRINRL 356 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 +++VV+++ + A+I +V A G++ RGD IT+ SM F Sbjct: 357 TVSVVMDEAVAGNLNQ------------AQIQALVGNAIGLDVARGDDITVASMAFDTTA 404 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 + + + + + + +LV +L R +D + E+ Sbjct: 405 ADRAAEELAAAEEAERQAQLWSMVKTGGIALLVLVVWLRSRRGREDEEDEDYEALELADD 464 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 + I T + DN AL+ + + + + M+ Sbjct: 465 VMAELDRIRIESTRAVPVVDNAALE----------------MEAAERARVRGEIATMVSE 508 Query: 538 NEERFAKILRKWARS 552 + A +LR W Sbjct: 509 KPDEVAAMLRGWLSE 523 >gi|121612614|ref|YP_001000028.1| flagellar MS-ring protein [Campylobacter jejuni subsp. jejuni 81-176] gi|167004986|ref|ZP_02270744.1| flagellar MS-ring protein [Campylobacter jejuni subsp. jejuni 81-176] gi|87250495|gb|EAQ73453.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni 81-176] Length = 560 Score = 313 bits (802), Expect = 5e-83, Method: Composition-based stats. Identities = 116/565 (20%), Positives = 226/565 (40%), Gaps = 26/565 (4%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPI---MLFMAARFFVNSPHYDNLYVKLEVS 58 +L Q+ Q +++ T R I V++ + LF + N+ Y L + S Sbjct: 5 NMLHQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRGSGSNANN-GYAVLVENVSPS 63 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 I L + NI +++ + I VP V + R+ +A++GL S G+E FD Sbjct: 64 SSAAIVAKLEQNNIPYKLESE-NKILVPQDQVYRQRMFIASEGLIKDSR-VGFEAFD-TQ 120 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178 +FG T+ Q++ RA+EGE+ARTI+++ I +A VHI P F + PTASV++ Sbjct: 121 AFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASVVVN 180 Query: 179 AINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQ 235 K + I+++V+AAVP L +V + D +G L E E +++ + Sbjct: 181 VREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRVQIKFKS 240 Query: 236 AIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 + +E I + LA F G+D + +V + + Q+ + +YDP+ V L+++ Sbjct: 241 DQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLNEER 300 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 + + + N+ V + ++ K + +N E++ T + Sbjct: 301 TGRKDPEIQGVPGAVSNIGPV--EGLDNKGQIDTYKKNQVTTNNELSKTITNTKKQFATV 358 Query: 355 ERLSIAVVVNKGRL----TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 R S AV ++ +S LA + IV ++ RGD++ + + Sbjct: 359 LRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEELASVESIVKNTINFSATRGDSVVVQN 418 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 + F + V+ +R I + + + +L+ + Sbjct: 419 LPFHRESIRVESKVKT----FYNRFVEPFIPPVKYFIAAILLFIFYKKVIAPFTQKML-- 472 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 + + + P + N A + + + I V + + Sbjct: 473 EDVAAQEEMQQGPNAVLDDAEDALEKFNAARKKVEEQLGFGDNFNEDSIQYEVLLE---K 529 Query: 531 LLHMIEINEERFAKILRKWARSEIE 555 L ++ E A +L+ +++ E Sbjct: 530 LRGLVSDKGEEIAALLQNLIQNDSE 554 >gi|146277680|ref|YP_001167839.1| flagellar M-ring protein FliF [Rhodobacter sphaeroides ATCC 17025] gi|145555921|gb|ABP70534.1| flagellar M-ring protein FliF [Rhodobacter sphaeroides ATCC 17025] Length = 572 Score = 313 bits (801), Expect = 6e-83, Method: Composition-based stats. Identities = 132/571 (23%), Positives = 225/571 (39%), Gaps = 39/571 (6%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 ++ QL QF R + A VIL +L +A + P LY L ++ Sbjct: 23 GMVSQLRQF----GDQPGLRRAMPAIVILSVTVLALAGWILMREPSRVTLYPGLPEAEKA 78 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 R+ L+ I I + ++VP +AR+ LAAQGLP + L D G Sbjct: 79 RVIDTLTGGGIAAVIDERTGEVAVPGGDYHRARMLLAAQGLPQGLPDGNAMLSDL--PMG 136 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 + ++ +A E ++AR+I IS + AARVH+ +P+ +F + P ASV ++ Sbjct: 137 TSKSVETARLRQAQELDLARSITEISAVSAARVHLALPERSAFLRDSQPPRASVFLQVAP 196 Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAI 237 EAI +LV+++VP + DVTV+D G+LL+ + + + L + Sbjct: 197 GRALDGAQVEAIVNLVSSSVPGMARQDVTVVDQMGRLLSRGSDDPAVLLNDRQLQHRVQM 256 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + I L+ G N V +++ Q+IRE DPD S + + S Sbjct: 257 ETLYRNRIESLLSPITGPGNLAVQVTIDMDFTRQEIREEQVDPDRTAILSEQSQVEE--S 314 Query: 298 ETSQPESAVTVEQNMPH--------VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 Q N P + + + N+EI+ K T Sbjct: 315 ADPQARGIPGAVANAPPPEAALAEGAPPTEAGAAPPALRSRSQNSTRNFEISRKVETTLP 374 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQG--KIDSYLAEINKIVSAATGINSRRGDTIT 407 ++ R+S AVV+ A ++ A+++++ +A G + RGD +T Sbjct: 375 ATARIARVSAAVVIRAQPQPAPADPEAPSPPLLPEALQADLDRLTRSAIGFDETRGDVVT 434 Query: 408 ITSMDFLENQLFNSG--TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465 IT+ FL+ + T Q D+ + F A+V L +R + N Sbjct: 435 ITAQPFLDTIMPEPPGWTSQPWVADLARQAFLLAALAVV-----------ALGVVRPILN 483 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 G LSP + V G +D A + Q + + +R + Sbjct: 484 RVLLPAPAAAGALPLSPGEAAVEVGEGETLDDVRARLKARQGALTKNMLDAARS----HE 539 Query: 526 QSDLRLLHMIEINEERFAKILRKWARSEIED 556 + L + ++E + R A R+ SE++ Sbjct: 540 EQILVIRKLVEEDSGRIATTFRQMIASELDT 570 >gi|225871927|ref|YP_002753381.1| flagellar M-ring protein FliF [Acidobacterium capsulatum ATCC 51196] gi|225792578|gb|ACO32668.1| flagellar M-ring protein FliF [Acidobacterium capsulatum ATCC 51196] Length = 534 Score = 313 bits (801), Expect = 7e-83, Method: Composition-based stats. Identities = 116/518 (22%), Positives = 224/518 (43%), Gaps = 39/518 (7%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 ++ + LY L D ++ L+ A I F +S +G+++ VP+ + KAR+ + A Sbjct: 52 FWYGTRTDWRTLYAGLNPDDARTMAGQLTTAGIPFEVSPDGTALEVPAPDLDKARLTVTA 111 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 G PSS G+ LFDK N G + F +++ RALEGE+ +TI ++ + ++RV++VMP Sbjct: 112 GGGPSSGR-MGFALFDKPNWVG-SDFDEQVNYQRALEGELEQTIDTLEDVRSSRVNLVMP 169 Query: 160 DMGSFRKIGARPTASVMIRAI-NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F ASV++R + A+AIR+LVAAAV L +V ++ + G+ Sbjct: 170 HDSLFTSEQRAAKASVVLRLKHRTLSEEEAQAIRNLVAAAVDGLTPANVVLVSANGE--- 226 Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 + +L + Q + + + L G+ N +AV + + T + +Y Sbjct: 227 --DQFGAHGQNALELAQ--EQALTQQVIGTLQPVAGLGNVHAAVHMDFDTATTSETDEIY 282 Query: 279 DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVP---LPRSLENTDKKEEQ 335 +P+ S++ S + S+ N P+ + P P++ + +EE Sbjct: 283 NPNQTATLSMQRSTQSTGSQ-PVAAGVPGAASNAPNSNATGKPPLYPPQATGQQNSQEES 341 Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395 S Y ++ K KL RL++AVV+N+ + + + Q + + + + ++V AA Sbjct: 342 STYGVSKKIEHRAQGPGKLNRLTVAVVLNEPWVMQGK-KKVWQPRSAAEMQRLTQLVQAA 400 Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455 G N RGD +T+ M F +S + + L L + + Sbjct: 401 VGYNQARGDIVTVEQMPF-----DTGSDTPLSLQERVQSWMRMASPLLRPAALLLGILLV 455 Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL 515 L R + K GK++ + + + + D++ + + + Sbjct: 456 VLMVFRPML-----KAASSSGKALPAGVSVKAVIG-----------DTTAEGLAELPQAD 499 Query: 516 QSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + ++ + + R+ + + A++L+ W SE Sbjct: 500 RQQLQAQAIYE---RVAERVNKEPAQSARLLQSWIHSE 534 >gi|170737019|ref|YP_001778279.1| flagellar M-ring protein FliF [Burkholderia cenocepacia MC0-3] gi|169819207|gb|ACA93789.1| flagellar M-ring protein FliF [Burkholderia cenocepacia MC0-3] Length = 548 Score = 312 bits (800), Expect = 9e-83, Method: Composition-based stats. Identities = 116/540 (21%), Positives = 223/540 (41%), Gaps = 30/540 (5%) Query: 22 ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81 L ++ + + Y L+ E + AL I +RI + Sbjct: 33 KLAPIVILAISLAALTMMLMHRQDSRYKPLFGSQEAVVAADMMAALDAEGIPYRIHPDSG 92 Query: 82 SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 + VP +G AR+ LAA+G+ G E DK + G++ F+Q++ R LEGE+ + Sbjct: 93 QVLVPEQKLGAARMMLAAKGVV-GKLPEGLEQVDKSDPLGVSQFVQDVRFRRGLEGELTQ 151 Query: 142 TIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRAINPSVY--KSAEAIRHLVAAA 198 +I ++ + +ARVH+ + SF G + +ASV++ + AI LVA + Sbjct: 152 SIMALEPVSSARVHLSIAKSASFILADGDKSSASVVLTLKPNRKLNKEQIAAIVALVAGS 211 Query: 199 VPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDN 257 V NLD VTV+D +G L+A ++ + ++ ++ NI + L LG N Sbjct: 212 VANLDPARVTVIDQSGNHLSAQIDLVLGNSTLDSELGAQMREQVLRNIRELLTPVLGDGN 271 Query: 258 FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPH-VS 316 FR++V EL+ D + Y + +++++A R E ++A+ V ++ + + Sbjct: 272 FRASVAVELDHDRVEETREQYG------EAPKVTQEAIRDEKDIGQAALGVPGSLSNRPA 325 Query: 317 DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA 376 ++ K + Y + + +++RL++AVV+N Sbjct: 326 PPSTASMPEAPHSAKNAQTRQYAYDRNVVQIKRSPVRVKRLNVAVVLNNAAAPG-----G 380 Query: 377 DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHF 436 + + LA+++ I+ GI++ R D +T++S+DF + S Q + + Sbjct: 381 GKAWAPAQLAQVDTILRDGLGIDADRDDALTVSSLDFRGTPVTES---QPWWKQ--PDNL 435 Query: 437 ATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPN 496 T+ + +G LL L ++ I G ++ P Sbjct: 436 VTIGTWAAWALGALLGFVFIFRPLLKVLRIW------ANGGRDPLSQGANAVSGGPEAPA 489 Query: 497 DNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIED 556 A D+ Q + NL + + L+ H+ + ER A++++ W R + Sbjct: 490 LAAAADADTQPLLLADANLPPIGSGADVLIAHLK--HLAAQDPERVAEVIKPWIRDDEHT 547 >gi|89069804|ref|ZP_01157139.1| putative flagellar M-ring protein [Oceanicola granulosus HTCC2516] gi|89044605|gb|EAR50721.1| putative flagellar M-ring protein [Oceanicola granulosus HTCC2516] Length = 514 Score = 312 bits (799), Expect = 1e-82, Method: Composition-based stats. Identities = 126/527 (23%), Positives = 221/527 (41%), Gaps = 23/527 (4%) Query: 30 LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSM 89 +V ++ + + LY L+ + + AL + + GS I V S+ Sbjct: 1 MVVVLAVLFVGRSTPTRQMALLYAGLDAAAAGEVVTALDTRGEVYEVR--GSGIYVESAR 58 Query: 90 VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149 R+ LA +GLPS + GYEL D ++ FG TS M + RA EGE+ARTIQS G+ Sbjct: 59 RDLLRMTLAGEGLPSGGAQ-GYELLDSLSGFGTTSQMFDAAYWRAKEGELARTIQSSPGV 117 Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209 A RVH+ +P F++ G A + A A+A RHLVA+AV L DV V Sbjct: 118 RAVRVHVSVPANRGFQREGQPAAAVTVTSAGGGLSAAQAKAFRHLVASAVTGLAPDDVAV 177 Query: 210 LDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 +D +G + + + + + + + L A +G N + E + Sbjct: 178 IDESGLV------AAADDSSAPAAQGERERLMRERLQRLLEARVGHGNAVVELNIETETE 231 Query: 270 TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT 329 T+QIRE +DP+ +V + +S+ ++ + AVTV N+P D S Sbjct: 232 TEQIRERQFDPEGRVAIAEDVSERSESASGGT--GAVTVASNLP---DGDAAGGGSESQA 286 Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEIN 389 + + +NYE++ + R+++AV++N + G + + LA + Sbjct: 287 SETRQLTNYEVSQVEREVLRAPGAVRRITVAVLINDPVEVDS-GVETATPRSEEELAVLR 345 Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGT 449 +V++A G + RGD IT+ SM F + + + V+ + V+ + V Sbjct: 346 DLVASAVGFDEARGDVITLRSMPFEPPAVAGTEALDVAAPEPP----LDVMWLVQLAVMA 401 Query: 450 LLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 ++ LGL +R L A E G L+ P + + A + + + Sbjct: 402 VVALVLGLFVIRPILTGARPAALPERGPPPALTMEPSARGEPGLPALRETQAGEVAMSQL 461 Query: 509 FS---HSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 + + + RL +++ ++ +IL+ W Sbjct: 462 PTFDMAEFDRAPPQEDLSTLDPVSRLRRLMDERQDETLQILQSWMEE 508 >gi|258514003|ref|YP_003190225.1| flagellar MS-ring protein [Desulfotomaculum acetoxidans DSM 771] gi|257777708|gb|ACV61602.1| flagellar M-ring protein FliF [Desulfotomaculum acetoxidans DSM 771] Length = 512 Score = 311 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 115/559 (20%), Positives = 224/559 (40%), Gaps = 62/559 (11%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +LD+L Q ++S + + + ++I + IL + + F+ Y L LE D Sbjct: 6 LLDRLKQRWQSLSQVKKAFVIIAGTGILAATLYLIT---FLTQTSYTPLMTNLEPRDAGA 62 Query: 63 ISVALSEANI-DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L DF+++D G++I VP V + RI LA+ G+ G+ELFD+ G Sbjct: 63 IEEKLKSLKYEDFKLADQGTTIMVPKEQVYEIRIKLASSGVLQGGG-LGFELFDQNQ-MG 120 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV--MIRA 179 ++ F Q++ RAL+ E+ RTI + + ARVH+V+P F + S+ ++ Sbjct: 121 VSDFEQQVDYQRALQEELRRTIIQLEEVEQARVHLVLPQKSVFVDEQEPASVSIALKLKP 180 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA------NEMERNILGKSLSI 233 + + + I L ++ L + +V ++D G +L+ +E ++ K + Sbjct: 181 LAKLKPEQVKGIADLAVGSIQGLKLENVHIIDMQGHILSDTIDTENDEDSSQVINKQQQV 240 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293 + + E+E I L LG D S V AE++ + Q+I + P KV + K Sbjct: 241 RREYEKELEKRIQNVLDRVLGTDKAVSMVTAEMDFNKQEINTTTHGPGQKVSEQLINEKS 300 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 + Q P +D +E+ + E +NY+++T Sbjct: 301 QGTGLGGVTGTDAQNTQTYPTGTDN-------VESASRDESITNYQVDTTQQKVVQPPGT 353 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 +++LS +VVV+ + + +I +VS A G + RGD I +T++ F Sbjct: 354 IKKLSTSVVVDGK-------------LSATRIQQIESLVSTAIGYDQARGDQINVTNIAF 400 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 + + ++ + L+ + G ++ + + + ++ + Sbjct: 401 -DTSYQDKMQAEMGKEETLAAQKQRQQLIYFAIAGAVIFLIMSAFLIAYMRRRRRQQQED 459 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 +SI S QD+ + L+ + Q + Sbjct: 460 TLEESI-----------------------KSVQDLIEEEQELEVKYIDVKHDQ----IKK 492 Query: 534 MIEINEERFAKILRKWARS 552 + + + A+IL+ W Sbjct: 493 LAKERPQDIAEILKIWLSE 511 >gi|254519422|ref|ZP_05131478.1| flagellar MS-ring protein [Clostridium sp. 7_2_43FAA] gi|226913171|gb|EEH98372.1| flagellar MS-ring protein [Clostridium sp. 7_2_43FAA] Length = 523 Score = 311 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 120/567 (21%), Positives = 244/567 (43%), Gaps = 58/567 (10%) Query: 1 MAILDQLLQ----FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLE 56 M ++D+L + + S + + + + ++ I+ + F+ ++ Y L+ L+ Sbjct: 1 MLLMDKLKESFSKLWGKFKSFSKGIRIAIIAALVTFIIAIGSLFFYNSANKYKVLFSNLD 60 Query: 57 VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 SD ++ L E +D +I G +I VP + V + R+ LA + S + GYEL D Sbjct: 61 ASDAQLVTNKLKEKKVDMKIE--GETIMVPKASVDELRLELAPE---LSDGSKGYELMDT 115 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 NSFG+T ++ ++R +GE+ +TI+S I RVHI F + A+V Sbjct: 116 GNSFGMTDEEFKLKKLRMQQGELEKTIKSFPQIDTVRVHITPSKDSVFVEDKEPGKAAVY 175 Query: 177 IRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-------EMERNIL 227 ++ + + + E+I LV+ + N+ ++ V+D LLT + E+ + Sbjct: 176 LKLLPGNKLGKEQVESIVALVSGSTENVPKENIEVIDDNMNLLTKDLNNSDGTEVSSETI 235 Query: 228 GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS 287 K ++ + + +I+ +I L +G + +S+V +L+ D++Q E + DP+ KV S Sbjct: 236 EKQFNLEKKYEEDIQKSIIDLLEPVVGKNKVKSSVNVDLDFDSKQKTETIIDPN-KVIVS 294 Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 + K+ T + V+ NM + D + + ++E +NYE T Sbjct: 295 QQTIKEKNGINTGENSGGP-VDNNMGNTIDEGT----TGNGSSREEVNTNYESGKTETKT 349 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 +++RL+ +V ++ V A I K V+ A G+N+ RGD+++ Sbjct: 350 ISAPGEVKRLTASVFIDGNIDGNVQ-------------AAIEKSVANAIGLNTERGDSVS 396 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + M F + S ++L++ + L L+ + + L R + + Sbjct: 397 VVGMTFDPITKEEAQKEFDSINELLAKENRNKMIIYSVLGLLGLIIIVVILILVRRKSKN 456 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 + ++ E ++ + T +MP+ N S N ++ I + + K + Sbjct: 457 NQEEKENLLDVVIDDRLSNE--NTEVMPSINF-----------ESINPKAHIENEIKKYA 503 Query: 528 DLRLLHMIEINEERFAKILRKWARSEI 554 + ++ A I++ W Sbjct: 504 TDK--------PDQVADIVKSWLAENE 522 >gi|157147120|ref|YP_001454439.1| flagellar MS-ring protein [Citrobacter koseri ATCC BAA-895] gi|157084325|gb|ABV14003.1| hypothetical protein CKO_02897 [Citrobacter koseri ATCC BAA-895] Length = 540 Score = 311 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 124/550 (22%), Positives = 227/550 (41%), Gaps = 41/550 (7%) Query: 25 LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSIS 84 +A V V + + + + Y LY E V+++ L NI +RI+ + I Sbjct: 1 MAIVGGVVLAAAIILSLWNRNQGYVALYGSQEHLPVSQVVDVLGAENIAYRINPDNGQIL 60 Query: 85 VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144 V S + +AR+ LAA+G+ S+++ GYEL DK G + F+Q + R+LEGE+A++I Sbjct: 61 VSESKLPQARMALAAKGI-SAATPDGYELMDKEEMLGSSQFIQNVRYKRSLEGELAKSIM 119 Query: 145 SISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAINPSVY--KSAEAIRHLVAAAVPN 201 ++ + ARVH+ + + SF +ASVM++ + ++ LVA +VP Sbjct: 120 ALDPVENARVHLGLNESSSFVLTNKPTSSASVMVQLHYGRKLDEQQVASVIQLVAGSVPG 179 Query: 202 LDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDN 257 + G V V+D +G LL+ + ++Q I+ + NI L + +G N Sbjct: 180 MQPGAVRVVDQSGNLLSDGIEGPDGGMTSKRMGDDVMQRIREDTTKNITSLLTSLVGPGN 239 Query: 258 FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSD 317 FR +V +++ + + D +V ++ +++ P Sbjct: 240 FRISVAPTVDLSRVEETQERLGKDPRVSDEQLSQENTTNEMAFGIPGSLSNRPVNPTPQT 299 Query: 318 RKVPLPRSLEN---------------TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 P + + + +EQ Y + H YKLE+LS+AVV Sbjct: 300 PANPAEGNPPAENAANAANNTDPRSLSSRSQEQRKYAFDRDIRHIRHPGYKLEKLSVAVV 359 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 +N+ A L + ++V +A GI RGD +T+ + F Sbjct: 360 LNQ-------AAPALAKITPEQLTSMTRLVESAAGIEKARGDALTLDVLTFTAPADDVMP 412 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482 + + D +++ N + L+ L + F ++R D K L Sbjct: 413 DL-KWWQDPSMQYWGQ--NGGIGLLALLTLLFGVRPLVQRFGRRDPITLDGEATKKELEA 469 Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542 P + + + A ++N+D+ + + +K L+LL E ER Sbjct: 470 PDNGVVMNDDEFASLSKAAFNNNEDLLPP------QSSGLEAKVEFLQLLAQSET--ERV 521 Query: 543 AKILRKWARS 552 A++L++W S Sbjct: 522 AEVLKQWINS 531 >gi|28211331|ref|NP_782275.1| flagellar MS-ring protein [Clostridium tetani E88] gi|28203771|gb|AAO36212.1| flagellar M-ring protein fliF [Clostridium tetani E88] Length = 521 Score = 311 bits (797), Expect = 2e-82, Method: Composition-based stats. Identities = 108/563 (19%), Positives = 226/563 (40%), Gaps = 55/563 (9%) Query: 4 LDQLLQFFKSGTSLGRTRIL----ILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 +++L Q+F + + ++ + I ++ +++ P Y L+ +E D Sbjct: 1 MNKLSQWFNTLKDKIKDLSKKKKIAYGAIAVGIIGALISGIVYISKPKYAILFSNMEQED 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + + L ++ +F++ +G++I VP V R+ + +Q +P + ++G+EL DK N Sbjct: 61 MGTVYNKLKDSKENFKV--DGNTILVPREKVDSLRMEVMSQ-VPIKNGSNGFELLDK-NK 116 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-- 177 FG T +I RAL+GEI RTI+ I ARVH+VMP+ F K AS+ + Sbjct: 117 FGATEEEMKINYQRALQGEIERTIKGFPEIENARVHLVMPEDSVFIKDDTPAKASITLKI 176 Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTG----KLLTANEMERN-ILGKSLS 232 + +AI L + +V NL +V + D+ L +E + + + K + Sbjct: 177 KPYKKITDNQVKAIVALASGSVKNLPKENVEINDTNQILTKDLFKEDEFDSSESIQKQQA 236 Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292 + + + +E + L A G + + + A+LN D Q +YDP + V S + K Sbjct: 237 LKKEYEKTLEDKVTSMLEAVYGKERAKIKINADLNFDAIQDESTIYDPKNVVV-SEKNVK 295 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 + V+ NM + + +E NYE++ + T Sbjct: 296 ETTPGGNDLATGGSPVDDNMRNRAGNNEKDALVT----HEENVRNYEVSERKNKTLRAPG 351 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 + RL+++VV++ ++ + V +A G N +RGDTI++ + Sbjct: 352 SVRRLTVSVVLDGN-------------LDNATRNAVQNTVKSAVGYNEQRGDTISVEGLP 398 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F + + + L+R + ++ +G L + + +++ N +D + Sbjct: 399 FDTAYRERIEKDKEAMEEELARDKKMNLYKILAALGVLALGIIIGILVKKRRNKEDNELD 458 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR-L 531 + N+ + + ++ + ++ R + Sbjct: 459 ---------------------LINEGLDVVIDDEITEEKPKFKPIQLEEESEGAYIEREI 497 Query: 532 LHMIEINEERFAKILRKWARSEI 554 ++ +I++ W + Sbjct: 498 RKYATEKPDQVIEIVKAWLAEDE 520 >gi|163789650|ref|ZP_02184088.1| flagellar M-ring protein fliF [Carnobacterium sp. AT7] gi|159875182|gb|EDP69248.1| flagellar M-ring protein fliF [Carnobacterium sp. AT7] Length = 524 Score = 311 bits (797), Expect = 2e-82, Method: Composition-based stats. Identities = 119/568 (20%), Positives = 244/568 (42%), Gaps = 62/568 (10%) Query: 4 LDQLLQFF----KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 +D + + + T+LG+++ + L V+ I + A ++ Y L+ LE +D Sbjct: 1 MDGIKKIWTGIKDGWTNLGKSKRIGLVMVLFFVISIVTAMTYYTQKVEYATLFSNLEEAD 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I + ID+++ DNG++I + + V RI LA L S+ +G+E+FD+ S Sbjct: 61 AGTIVNDIKTKGIDYKLEDNGTTILIDQAQVDAYRIELAVNDLLPKST-TGFEIFDET-S 118 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI--GARPTASVMI 177 T ++I RA+ GE+ R+I ++ I A+V + +P+ F ++ +ASV++ Sbjct: 119 MMATDEDRKIMYQRAVTGELERSISALDSIEEAKVMLSLPEDSVFTSEENQSKASASVVL 178 Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME------RNILGK 229 ++ S + + I L++ AV NL ++ ++D+ G LL+ + +++ K Sbjct: 179 TPLSGSQIPANAVQGIASLISGAVDNLPKENIKIVDTAGNLLSVALEDEVNLNATDLVSK 238 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 +I + + ++E + + L G+D AV A++N D+ + I Y + S+R Sbjct: 239 YQAITNSYEQQLEQKLLQTLGPIYGIDKLTVAVNADMNFDSSESEIINYG-----DSSVR 293 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 + +T E + + V+ + + + +NYE+N+++ T Sbjct: 294 SETVSAGGKTIGVEEGEGFDNAINQVTSGEEGGNSTY------DRTTNYELNSETTNTIK 347 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 ++ERLS +V+ + + + IV+A G + R D I+I Sbjct: 348 APGEVERLSTSVIFDGN-------------LSPADKESLEAIVAATVGTVAEREDVISIQ 394 Query: 410 SMDFLENQLFNSGTVQV----SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465 +DF + T S D L R++ ++ LV L+ +++ + L Sbjct: 395 GIDFATSTEVVEPTAPEQLKSSIRDTLLRYWPYLVGGLVLLIVMIVLLRMLLR------- 447 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 + K E+ P PI + + Q +L+ +N +S+ Sbjct: 448 --NRKDDELDFFDEEEPEPI--------VQPMRPVQPTDEQKKAKEKADLKRELNKNMSE 497 Query: 526 QSDLRLLHMIEINEERFAKILRKWARSE 553 + + + + E A +++ W + E Sbjct: 498 KETT-VREYAKESPEGAADLIKIWMKDE 524 >gi|283856295|ref|YP_162369.2| flagellar M-ring protein FliF [Zymomonas mobilis subsp. mobilis ZM4] gi|283775291|gb|AAV89258.2| flagellar M-ring protein FliF [Zymomonas mobilis subsp. mobilis ZM4] Length = 619 Score = 311 bits (797), Expect = 2e-82, Method: Composition-based stats. Identities = 118/609 (19%), Positives = 232/609 (38%), Gaps = 81/609 (13%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++++ + K + + ++ + F +++P +LY +D I Sbjct: 34 VNKVYERVKDFVQQPAIKRSLPLMGLISLTAIGALIWFLLSAPPQRDLYPGAGDADRASI 93 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + AL I + I+ I+V KAR+ LA QGLP S+ + + G + Sbjct: 94 ASALETGGIHYNINRGNGVITVSEKDYYKARMLLAQQGLPKSAPDGDH--VISSLPLGAS 151 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 ++ A E ++ARTI++I + ARVHI P F + TASVM++ + Sbjct: 152 RAVEGERLRAAREVDLARTIETIDVVNQARVHIAEPQPSPFVREQVHGTASVMLKLMTGR 211 Query: 184 VYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQAIQHE 240 +AI++LVAA+VP + V+V+D G LL+A + + +I + L + Q ++ Sbjct: 212 NLSNAQVQAIQNLVAASVPGMAPEAVSVVDQAGHLLSATSNADNDINDRQLRLQQTVEAR 271 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 +NK L LG +N+ + V +L+ Q Y P RS S + Sbjct: 272 YMDALNKLLVPLLGENNYTAEVHTDLDFTESQATRESY-PKEGSLRSESGSWNKDGGPD- 329 Query: 301 QPESAVTVEQNMPHVSDRKV---------------------------------------- 320 Q NMP Sbjct: 330 QNGGIPGAMSNMPPTPANPTQNPPPNLQPPAQPNNQQNAQNGQQGQNAQGQPNGQNAQQG 389 Query: 321 ---------PLPRSLENTDKKEEQSN--YEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369 P + + + E N YE+ + + ++R+S+A+ + + Sbjct: 390 QNARAPGSVPAETAQQAQARTSENFNRYYELGREVSVIRNPTGSVKRVSVAIALRQINHG 449 Query: 370 EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFM 429 + +A++ K++ A G ++ RGD + I+S DF+ +F+ Q S++ Sbjct: 450 --------KPPSPEQVAQLEKLIKGAIGFDASRGDVVAISSSDFMGGSVFSMPWYQNSWV 501 Query: 430 DILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAV 489 +L+R+ + LV L++ L+ + ++ L I + + Sbjct: 502 PLLARNLS------ALLVAALVIFGFARPFLKARAEAAERRRLAENPLPQLEQTNIDNLI 555 Query: 490 TTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549 G P + + D+ + ++R++ + H ++ + R A ++ Sbjct: 556 AEGEEPAEEAGSQAITLDMIDAAPGYKARVDL---------VRHFVKQDPARAALVVHDM 606 Query: 550 ARSEIEDRY 558 RS+++ Sbjct: 607 MRSDLKSLE 615 >gi|168187560|ref|ZP_02622195.1| flagellar M-ring protein FliF [Clostridium botulinum C str. Eklund] gi|169294591|gb|EDS76724.1| flagellar M-ring protein FliF [Clostridium botulinum C str. Eklund] Length = 522 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 123/565 (21%), Positives = 223/565 (39%), Gaps = 58/565 (10%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 I ++ L + + + + +++ I + F+N+ Y LY ++ +D Sbjct: 3 KIKEKFKNLIDKFKGLTKGKKIAFSVLVVGIISGLIYLIVFLNTTKYAVLYKDMDPNDAQ 62 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 + L+E +++++ SSI VP V + R+ LA Q S + GYE+ + +SFG Sbjct: 63 TVMNKLNEKKVEYKVES--SSIKVPEDKVSELRLELAPQ---LKSGSKGYEILENADSFG 117 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 +T +E+ ALEGE+A+ I+S+ + ++V +VMP G+F K ASV I Sbjct: 118 MTDKERELNYKIALEGELAKNIKSLPEVKDSKVLLVMPQEGNFFKQAENAQASVRIEFNE 177 Query: 182 PS--VYKSAEAIRHLVAAAVPNLDMGDVTVL--------DSTGKLLTANEMER--NILGK 229 + +AI LV +V NL +V V+ D T L + + + K Sbjct: 178 GKSISKEQIKAIISLVTGSVKNLKKENVKVIGVVNGQTKDLTEDLFGDEDGKDLTTVTDK 237 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 + ++ E I L G ++AV +L+ D + V+DP++ V RS Sbjct: 238 QNKYKKNLEKEYVKKIMNILTPKYGEG-VKAAVNVDLDFDASEKTSTVWDPNN-VVRSEE 295 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 KD S+ + SA V+ NM + + + S ++ NYE+ T Sbjct: 296 TEKDTDTSKGGKV-SAGPVDNNMSNTYNNQDGNGSST----HEKTTKNYEVGKIEQKTVG 350 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 K++++S +V +N D+ +IN +V+ A + RGD IT+ Sbjct: 351 APGKIKKVSTSVTIN------------DENLSPVDKDKINSLVAGAISYDENRGDIITVE 398 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 + F E + + I + L+ G+ A R A Sbjct: 399 GLKFNEINDAKAEEDAKKQAEEKKAKQKAFIYKCIGGAIVTLLLIAGVIAFIRKRKKKKA 458 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 E+ G ++L +D I Q I N + I + K + Sbjct: 459 NNEEIEGINMLI--------------DDEIDPKEELQPINFDEENENTHIEKEIKKYASE 504 Query: 530 RLLHMIEINEERFAKILRKWARSEI 554 + ++ +I++ W + Sbjct: 505 K--------PDQVVEIIKAWMAEDE 521 >gi|146309431|ref|YP_001189896.1| flagellar MS-ring protein [Pseudomonas mendocina ymp] gi|145577632|gb|ABP87164.1| flagellar M-ring protein FliF [Pseudomonas mendocina ymp] Length = 559 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 117/567 (20%), Positives = 226/567 (39%), Gaps = 25/567 (4%) Query: 3 ILDQLLQFF-KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 +L L + G L L+ ++I + + + + + + LY E Sbjct: 1 MLQTLKSKLPEGGLKLDPRLSLVGLALIAALLAVGVVFYLWRDQGSFRPLYGTGEAYPAA 60 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 + L I +R+ + V +G+AR+ LAA+G+ +GYELFDK G Sbjct: 61 EVMQVLDGDAISYRLHPQSGQVLVREDQLGRARMLLAAKGV-QVKVPAGYELFDKDEPLG 119 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARP-TASVMIRAI 180 + F+Q++ R+LEGE+ART+ ++ G+ ARVH+ + + SF P ASVM++ Sbjct: 120 TSQFVQDVRLKRSLEGELARTVMALKGVEGARVHLALQESSSFVVGKREPGKASVMLQLA 179 Query: 181 NP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQ 238 + AI +LVA +VP LD +V V+D G LL+ ++ +V Q Sbjct: 180 PGYKLAPEQVSAIVNLVAGSVPQLDAANVQVVDQYGALLSRGIDTLGGPVQNWQVVDDYQ 239 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 ++ N LA LG N+R +V A+++ ++ Y ++ + + Sbjct: 240 NKAVANAEAVLAPVLGNGNYRISVAADIDFSQKEETFQAYGETPRLRNEVLRDESVLDQL 299 Query: 299 TSQPES--AVTVEQNMPHVSDRKVPLPRSLEN----TDKKEEQSNYEINTKSIATTHDNY 352 A Q P + + P N + +KE + + H + Sbjct: 300 ALGVPGSLANRPPQPAPEPVEGQPPAEGEAANKAATSLRKESNRQLDYDQSVTHVKHAPF 359 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 L + SIAVV+N + + G AE+ +V +A G N RGD +T++ Sbjct: 360 SLRQQSIAVVLN-------AAAAPEGGWTAEARAELEAMVKSAVGFNQARGDLLTLSVFP 412 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR---LHNIDDA 469 F + + + + + H + VF + +LL+ + + R + Sbjct: 413 FTAAGADAAQGEALPWWENVKVH--ELARLGVFALISLLLLLMVVRPAVRSLTQRSQPGV 470 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 G + + ++ + ++ + L + + + L Sbjct: 471 AAAVQGDEQLALHAERTAERLLARVGDEPPGATVLGELSPLSEIRLPAPGSGLELQIEHL 530 Query: 530 RLLHMIEINEERFAKILRKWARSEIED 556 ++ + + + ER ++++++W D Sbjct: 531 QM--LAKNDPERVSEVIKQWIGRNERD 555 >gi|260752868|ref|YP_003225761.1| flagellar M-ring protein FliF [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552231|gb|ACV75177.1| flagellar M-ring protein FliF [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 619 Score = 311 bits (796), Expect = 3e-82, Method: Composition-based stats. Identities = 117/609 (19%), Positives = 232/609 (38%), Gaps = 81/609 (13%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++++ + K + + ++ + F +++P +LY +D I Sbjct: 34 VNKVYERVKDFVQQPAIKRSLPLMGLISLTAIGALIWFLLSAPPQRDLYPGAGDADRASI 93 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + AL I + I+ I+V KAR+ LA QGLP S+ + + G + Sbjct: 94 ASALETGGIHYNINRGNGVITVSEKDYYKARMLLAQQGLPKSAPDGDH--VISSLPLGAS 151 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 ++ A E ++ARTI++I + ARVHI P F + TASVM++ + Sbjct: 152 RAVEGERLRAAREVDLARTIETIDVVNQARVHIAEPQPSPFVREQVHGTASVMLKLMTGR 211 Query: 184 VYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQAIQHE 240 +AI++LVAA+VP + V+V+D G LL+A + + +I + L + Q ++ Sbjct: 212 NLSNAQVQAIQNLVAASVPGMAPEAVSVVDQAGHLLSATSNADNDINDRQLRLQQTVEAR 271 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 +NK L LG +N+ + V +L+ Q Y P RS S + Sbjct: 272 YMDALNKLLVPLLGENNYTAEVHTDLDFTESQATRESY-PKEGSLRSESGSWNKDGGPD- 329 Query: 301 QPESAVTVEQNMPHVSDRKV---------------------------------------- 320 Q NMP Sbjct: 330 QNGGIPGAMSNMPPTPANPTQNPPPNLQPPAQPNNQQNAQNGQQGQNAQGQPNGQNAQQG 389 Query: 321 ---------PLPRSLENTDKKEEQSN--YEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369 P + + + E N YE+ + + ++R+++A+ + + Sbjct: 390 QNARAPGSVPAETAQQAQARTSENFNRYYELGREVSVIRNPTGSVKRVTVAIALRQINHG 449 Query: 370 EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFM 429 + +A++ K++ A G ++ RGD + I+S DF+ +F+ Q S++ Sbjct: 450 --------KPPSPEQVAQLEKLIKGAIGFDASRGDVVAISSSDFMGGSVFSMPWYQNSWV 501 Query: 430 DILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAV 489 +L+R+ + LV L++ L+ + ++ L I + + Sbjct: 502 PLLARNLS------ALLVAALVIFGFARPFLKARAEAAERRRLAENPLPQLEQTNIDNLI 555 Query: 490 TTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549 G P + + D+ + ++R++ + H ++ + R A ++ Sbjct: 556 AEGEEPAEEAGSQAITLDMIDAAPGYKARVDL---------VRHFVKQDPARAALVVHDM 606 Query: 550 ARSEIEDRY 558 RS+++ Sbjct: 607 MRSDLKSLE 615 >gi|313901521|ref|ZP_07834968.1| flagellar M-ring protein FliF [Thermaerobacter subterraneus DSM 13965] gi|313468216|gb|EFR63683.1| flagellar M-ring protein FliF [Thermaerobacter subterraneus DSM 13965] Length = 551 Score = 310 bits (795), Expect = 3e-82, Method: Composition-based stats. Identities = 124/523 (23%), Positives = 213/523 (40%), Gaps = 37/523 (7%) Query: 44 NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP 103 + P + L+ +L+ +D I+ L E I F+++ G +I VP+ V + R+ LAAQGLP Sbjct: 48 SGPQWAPLFTQLDPTDAAAIAGQLEEQGIPFQLAQGGQAILVPAEQVDRLRLDLAAQGLP 107 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 + G EL + G T F +++ +R L+GE+ARTI + G+ AARVH+V P+ Sbjct: 108 RQGT-VGLELLE-NMPMGATEFERQVQYLRGLQGELARTIGRLEGVEAARVHVVRPERSP 165 Query: 164 FRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN- 220 F TA+V+++ + + +I HLVA+AV L DVTV+D+TG+LL+A Sbjct: 166 FVSQQRPATAAVLVQLKPGAELEPEQVRSIMHLVASAVEGLKPEDVTVVDTTGRLLSAGV 225 Query: 221 ----EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 E + G + + + E++ ++ L LG N + V AELN D Q + Sbjct: 226 ELAQEGTAVVPGDRFEVERRFEAELQRSLQTLLEQVLGPGNVIARVNAELNFDQQVVERH 285 Query: 277 VYDPD----SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332 +++P + RSI+ ++ + + V + N+P + + + Sbjct: 286 LFEPPADGGQGILRSIQELQETFTGQPA--PGGVPGDSNIPTY----PQVGGGTLDYQRS 339 Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV 392 E +NYE+N + RLS+AVVVN E Sbjct: 340 ERTANYEVNQVVDRVQVAPGAVRRLSVAVVVNGDLTPERRQALQQAVAAA---------- 389 Query: 393 SAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452 G + +R D + + +M F + Q + +R + L G L+ Sbjct: 390 ---IGSDPQRQDQVEVVAMPF--DTTVADRLQQSLEEERQAREATRRVALLAGAGGLALL 444 Query: 453 TFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS 512 + L A R + L P S+A T P Sbjct: 445 ALVLLVAAWRRRRLARRLLEAQAAGHGLPAVPGSTAGTVAAGPAGRGTAAVPGPGGPVPG 504 Query: 513 RNLQSRINSYVSKQS---DLRLLHMIEINEERFAKILRKWARS 552 + + ++ +++ E A+++R W Sbjct: 505 PAGAAATGANGKAAEATVLEQVSELVKNQPEHVAQVIRSWLAE 547 >gi|294013069|ref|YP_003546529.1| flagellar M-ring protein FliF [Sphingobium japonicum UT26S] gi|292676399|dbj|BAI97917.1| flagellar M-ring protein FliF [Sphingobium japonicum UT26S] Length = 583 Score = 310 bits (795), Expect = 3e-82, Method: Composition-based stats. Identities = 116/575 (20%), Positives = 240/575 (41%), Gaps = 63/575 (10%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 +D L F + +L + AA + P +L+ L +D + + Sbjct: 30 VDALKARFTGFMKQPAVAKSLPLLGLLGVVATAGAAWLALREPPQRDLFRALPDADKSAV 89 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + L + I + ++G ++V KA++ LAAQGLP S+ + G + D + G + Sbjct: 90 AQVLDQNGIRYDFDNSGG-MTVGEDEYFKAKMMLAAQGLPKSAPD-GNSMIDSL-PMGAS 146 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 ++ A E ++ARTI++I + +A+VH+ + F + ++P+ASVM+R + Sbjct: 147 RAVEGEKLRSAREMDLARTIEAIDSVESAKVHLAVEPPSVFLRERSKPSASVMLRLASGR 206 Query: 184 VY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEI 241 + AI HLVA+++P L+ D++++D G+LL+ N+ + L++ ++ Sbjct: 207 SLTDQQVSAIVHLVASSIPELNPEDISLVDQNGRLLSNND-GNAADDRQLAVQTRMEDRY 265 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 ++ L LG F + V AELN +Q Y D RS + + + + Sbjct: 266 RQSVIALLTPILGAGKFSTEVHAELNFAERQATRETYPQDEARLRSEQGTWASD----PR 321 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTD---------------------------KKEE 334 + A +P + P+ ++ T+ K EE Sbjct: 322 GQGAGGEASGIPGALSNQAPVNPTVTQTNPNGQAVAQGTESAQTAAQPGTPGNPLMKTEE 381 Query: 335 QSN--YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV 392 N +E+ + T ++RLS+AV ++ G + + +A + +V Sbjct: 382 TFNRSFELGREVSVTKDAVGTVKRLSVAVALDNG--------PDGKPRSAQEIAALEALV 433 Query: 393 SAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452 A G + RGD + ++S F + ++ + + ++ L R+ + ++ AL+ + G Sbjct: 434 KGAVGFDQARGDVVALSSRSFAKEEVVEAPWYEAQWVSPLVRNVSALLVALLLIFG---- 489 Query: 453 TFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS 512 +G L+R A ++ + IS+ + N + + D+ S + Sbjct: 490 --IGRPLLKRRAAAQAAAAEQIAVQGQKIGREISTEIGRQATANPDGSTP-ITLDMISST 546 Query: 513 RNLQSRINSYVSKQSDLRLLHMIEINEERFAKILR 547 + R + + + ++ + +R A ++R Sbjct: 547 YDYAQRADL---------IRNFVKQDPDRAALVVR 572 >gi|89895735|ref|YP_519222.1| hypothetical protein DSY2989 [Desulfitobacterium hafniense Y51] gi|89335183|dbj|BAE84778.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 537 Score = 310 bits (794), Expect = 5e-82, Method: Composition-based stats. Identities = 117/557 (21%), Positives = 225/557 (40%), Gaps = 34/557 (6%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 I +L+F+ L R + +I + L + ++ ++ ++P Y ++ +L + Sbjct: 8 IKQSILEFWG---KLSRPQKIITVAAPLAVAIALISLLYWASNPSYVAIFTELTDIEAGE 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I+ L E ++++ NGS+I VP R+ LA+ GLP S S E +K G Sbjct: 65 ITSELDELKANYKLGSNGSAILVPEKEAAAIRLKLASAGLPKGSEFSWSESLNKT-RVGE 123 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T + + L+ E+ T++++S + ARVH+ +P+ F + TA+V + Sbjct: 124 TESDRRLRYNLGLQTELEATLKTLSNVKDARVHLNIPEETLFIEQQEATTAAVTLTLKEG 183 Query: 183 S--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK----LLTANEMERNILGKSLSIVQA 236 S I +L+AA+V L + DVT+LDS G +L+ + + + + Q Sbjct: 184 SSITEDQIRGIANLLAASVKGLKLEDVTILDSNGNTLSDVLSEDNQPGKMTATQIQLKQL 243 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 + ++ L G A LN D + + P + + S Sbjct: 244 TEENTRKSVQSMLDKAFGAGKTIVRTNATLNFDQVTTDTVTHGPGAVLSESHTTENTT-- 301 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 TS +A V+ N+P S +++K + N++++T + R Sbjct: 302 -NTSPGGTAPGVDTNVPGYLAADGTWITS--SSEKTSDTLNHQVDTTQEQRIKSPGDIAR 358 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 LS++V+++ ++ +ID + +I IV++A GI+ RGD I + ++ F + Sbjct: 359 LSVSVLLDADSISAD--------QIDDQIEKIEAIVASAAGIDRDRGDVIQVAALPFDKT 410 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476 T I V + L+ F+ R DA+ E+G Sbjct: 411 GALEQEQALAE--AARKERLRTYIEWGVGALLALVFLFVLFRM--RSKRKQDAESLELGQ 466 Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536 + P+ A T L+ A + + + I K+S + ++ Sbjct: 467 ----ALQPVPLAATEELLLAQQEAEREAELKLAQQKQKSAEEIQRQKIKES---VDIYVQ 519 Query: 537 INEERFAKILRKWARSE 553 N + A++++ W E Sbjct: 520 NNPDEVARLVKTWLAEE 536 >gi|307293804|ref|ZP_07573648.1| flagellar M-ring protein FliF [Sphingobium chlorophenolicum L-1] gi|306879955|gb|EFN11172.1| flagellar M-ring protein FliF [Sphingobium chlorophenolicum L-1] Length = 587 Score = 310 bits (793), Expect = 5e-82, Method: Composition-based stats. Identities = 118/575 (20%), Positives = 240/575 (41%), Gaps = 63/575 (10%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 +D L F + +L + AA + P +L+ L +D + + Sbjct: 34 VDALKARFTGFMKQPAVAKSLPLLGLLGVVATAGAAWLALREPPQRDLFRALPDADKSAV 93 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + L ++ I + ++G ++V KA++ LAAQGLP S+ + G + D + G + Sbjct: 94 AQVLDQSGIRYDFDNSGG-MTVGEDDYFKAKMMLAAQGLPKSAPD-GNSMIDSL-PMGAS 150 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 ++ A E ++ARTI++I + +A+VH+ + F + ++P+ASVM+R + Sbjct: 151 RAVEGEKLRSAREMDLARTIEAIDSVESAKVHLAVEPPSVFLRERSKPSASVMLRLASGR 210 Query: 184 VY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEI 241 + AI HLVA+++P L+ D++V+D G+LL+ N+ + L++ ++ Sbjct: 211 SLTDQQVSAIVHLVASSIPELNPEDISVVDQNGRLLSNND-GNAADDRQLAVQTKMEDRY 269 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 ++ L LG F + V AELN +Q Y D R+ S + + Sbjct: 270 RQSVIALLTPILGAGKFSTEVHAELNFAERQATRETYPQDEARLRTETGSWQSD----PR 325 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTD---------------------------KKEE 334 + A +P + P+ ++ T+ K EE Sbjct: 326 GQGAGGEASGIPGALSNQAPVNPTVTQTNPNGQAVAQGTQSAQTAAQPGTPGNPLMKTEE 385 Query: 335 QSN--YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV 392 N +E+ + T ++RLS+AV ++ G + + +A + +V Sbjct: 386 TFNRSFELGREVSVTKDAIGTVKRLSVAVALDNGADG--------KPRTAQEIAALEALV 437 Query: 393 SAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452 A G + RGD + ++S F + ++ + + ++ L R+ + ++ AL+ + G Sbjct: 438 KGAVGFDQARGDVVALSSRSFAKEEVVEAPWYEAEWVSPLVRNVSALLVALLLIFG---- 493 Query: 453 TFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS 512 +G L+R A + IS+ +T N + + + D+ S + Sbjct: 494 --IGRPLLKRRAAAQAAAAEQTAVVGQKIGREISTEITRQATVNPDGSTPVT-LDMISST 550 Query: 513 RNLQSRINSYVSKQSDLRLLHMIEINEERFAKILR 547 + R + + + ++ + +R A ++R Sbjct: 551 YDYAQRADL---------IRNFVKQDPDRAALVVR 576 >gi|310816845|ref|YP_003964809.1| flagellar M-ring protein FliF, putative [Ketogulonicigenium vulgare Y25] gi|308755580|gb|ADO43509.1| flagellar M-ring protein FliF, putative [Ketogulonicigenium vulgare Y25] Length = 500 Score = 310 bits (793), Expect = 5e-82, Method: Composition-based stats. Identities = 142/550 (25%), Positives = 238/550 (43%), Gaps = 58/550 (10%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + LL + + R +IL + L + + V P LY L+ + + Sbjct: 1 MQNLLALWSGFS---LRRRIILVAATLGIFLAVIGLARGVGRPDMALLYAGLDPAASAEV 57 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 A+ + + F + G +I VP++ R+ LA GLP+ + GYEL D ++ FG T Sbjct: 58 VAAVEQQRLPFEVR--GDAIYVPAASRDLLRMTLAGAGLPAPGAQ-GYELLDNLSGFGTT 114 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 + M + RA EGE+ARTI ++ G+ AARVHI P F+ G TA+V + + S Sbjct: 115 AQMFDAAYWRAKEGELARTILAVPGLQAARVHISPPAARVFQ-QGEPATAAVTVTMASGS 173 Query: 184 -VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242 + A+A R L+AAAVP LD G+V V+D+ L+ A + + + Q E+ Sbjct: 174 ASQQQAQAFRSLIAAAVPGLDPGNVAVIDAKAGLIAAPD--------NAQLADTRQDELR 225 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 + L A +G N + E DT+ I E DP+ +V S +S+ A+RS+ + Sbjct: 226 NRVRSLLEARVGAGNAVVELAVETVTDTESIFERRLDPEGRVVVSNDVSETARRSQGN-A 284 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 + +VTV N+P + + S E+ + + NYE++ S + RL++AV+ Sbjct: 285 DGSVTVASNLPDGAANQEAGSSSSEDRESRNVT-NYELSETSREVLRAPGAVRRLTVAVL 343 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 VN+ E + L + ++V++A G ++ RGD IT+ +M F+ + + Sbjct: 344 VNEPTGPEAA------PRAPDELEALRELVASAVGFDAARGDVITLRAMPFVAPPVLGTE 397 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482 V +R F + + F L+ LGL LR L + S Sbjct: 398 AVAAP-----ARLFDP-MQLVQFGALALVALILGLFVLRPLLRPK---------PQVDSL 442 Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542 PP+ MP + + + RL +I +E Sbjct: 443 PPLLDDSFAMAMP-------------------MADGFAALDAPDPVARLTALIADRQEDS 483 Query: 543 AKILRKWARS 552 ++L+ W Sbjct: 484 VRLLQSWVED 493 >gi|219670159|ref|YP_002460594.1| flagellar M-ring protein FliF [Desulfitobacterium hafniense DCB-2] gi|219540419|gb|ACL22158.1| flagellar M-ring protein FliF [Desulfitobacterium hafniense DCB-2] Length = 537 Score = 309 bits (792), Expect = 6e-82, Method: Composition-based stats. Identities = 118/557 (21%), Positives = 223/557 (40%), Gaps = 34/557 (6%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 I +L F+ + +I+ +A+ + V I L ++ ++ ++P Y ++ +L Sbjct: 8 IKQSILGFWGKLSR--PQKIITVAAPLAVAIAL-ISLLYWASNPSYVAIFTELTDIQAGE 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I+ L E + +++ NGS+I VP R+ LA GLP S S E +K G Sbjct: 65 ITSELDELKVKYKLGSNGSAILVPEKEAAGVRLKLANSGLPKGSEFSWSESLNKT-RVGE 123 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T + + L+ E+ T++++S + ARVH+ +P+ F + TA+V + Sbjct: 124 TESDRRLRYNLGLQTELEATLKTLSNVKDARVHLNIPEETLFIEQQEATTAAVTLTLKEG 183 Query: 183 S--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQA 236 S I +L+AA+V L + DVT+LDS G L+ + + + + Q Sbjct: 184 SSITEDQIRGIANLLAASVKGLKLEDVTILDSNGNTLSDVLNEDNQPGKMTATQIQLKQL 243 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 + ++ L G A LN D + + P S + S Sbjct: 244 TEENTRKSVQSMLDKAFGAGKTIVRTNATLNFDQVTTDTVTHGPGSVLSESHTTENTT-- 301 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 TS +A V+ N+P +++K + N++++T + R Sbjct: 302 -NTSPGGTAPGVDTNVPGYL--APDGTWITSSSEKTSDTLNHQVDTTQEQRIKSPGDIAR 358 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 LS++V+++ ++ +ID + +I IV++A GI+ RGD I + ++ F + Sbjct: 359 LSVSVLLDADSISAD--------QIDDQIEKIEAIVASAAGIDRERGDEIQVAALPFDKT 410 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476 T I V + L+ F+ R DA+ E+G Sbjct: 411 GALEQEQALAE--AARKERLRTYIEWGVGALLALVFLFVLFRM--RSKRKQDAESLELGQ 466 Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536 + P+ A T L+ A + + + I K+S + ++ Sbjct: 467 ----ALQPVPLAATEELLLAQQEAEREAELKLAQQKQKSAEEIQRQKIKES---VDIYVQ 519 Query: 537 INEERFAKILRKWARSE 553 N + A++++ W E Sbjct: 520 NNPDEVARLVKTWLAEE 536 >gi|222099438|ref|YP_002534006.1| Flagellar M-ring protein [Thermotoga neapolitana DSM 4359] gi|221571828|gb|ACM22640.1| Flagellar M-ring protein [Thermotoga neapolitana DSM 4359] Length = 537 Score = 309 bits (792), Expect = 7e-82, Method: Composition-based stats. Identities = 100/483 (20%), Positives = 196/483 (40%), Gaps = 26/483 (5%) Query: 1 MAILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLE 56 M + +Q+ +K S+ R R ++ + I+ + +PHY L L Sbjct: 5 MNLFEQIKNLWKKIFDLWNSMPRERRFLVGGIAAALIISIVLFAIIAATPHYRLLVAGLS 64 Query: 57 VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 + I L E NI +++S G V + R+ LA++G+ + G+ + Sbjct: 65 EEEAGTIIQKLEEMNIPYKVSPGGDIYVSDKYNVYELRMKLASEGI-LGGTRQGFSIL-S 122 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK-IGARPTASV 175 NSFG TSF +++ AL+ E+ R+I +I G+ ARVH+V+P + + A P ASV Sbjct: 123 ENSFGATSFDKQVKYQIALQQELERSIMTIRGVKDARVHLVLPKYTYYVRGEMAEPRASV 182 Query: 176 MIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKS 230 ++ + I LV+ AV L +V V+D+ + L+ ++ E + Sbjct: 183 LVVLEPGAELTREQVRGIVELVSGAVEGLKPENVRVVDNYSRSLSDMLESDEETFLASSK 242 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290 L + Q ++ E + KAL + G LN + Y+ ++ E +R Sbjct: 243 LELKQQLEKYYENKLKKALESVFGPGRVEVIPDVSLNWTKIETEMKRYEAPARREGLVRS 302 Query: 291 SKDAQRSETSQP--ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 + + P V E N+P +S V + ++ +NYE+N Sbjct: 303 QETETERSQNLPVSGGEVGTESNIPPLSYPSVSGEGT-STYERTHTITNYELNEIYQKIL 361 Query: 349 HDN-YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG-INSRRGDTI 406 ++ ++ LS+AV+++ + + IN +V G + S ++ Sbjct: 362 QNHEGEISSLSVAVIIDASSTVLQSNNNWNDV--------INDLVEKGIGSVTSSASFSV 413 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 + + F + + + ++ + R + + T L+ ++ + +RR+ Sbjct: 414 AVAFLPF-DRTIERTLQRELEQIQARKRFTMYSLGIAILGFLTFLLMYILIVQIRRIRAR 472 Query: 467 DDA 469 A Sbjct: 473 KLA 475 >gi|32266110|ref|NP_860142.1| flagellar MS-ring protein [Helicobacter hepaticus ATCC 51449] gi|32262159|gb|AAP77208.1| flagellar basal body M-ring protein FliF [Helicobacter hepaticus ATCC 51449] Length = 570 Score = 308 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 119/575 (20%), Positives = 232/575 (40%), Gaps = 32/575 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNS----PHYDNLYVKLEVS 58 I +Q+ + + RI+IL + +++ L F V + +Y+ L+ L Sbjct: 6 IFEQIARVLNKLNK--KQRIIILTTFVVLISFLTYLVLFKVETKNEYENYEVLFSNLSAE 63 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 D I L + I ++I + + I VP V + RI L + GLP +S N G+++ + + Sbjct: 64 DSALILQKLQQDKIPYKIPQD-NIIMVPKDNVYEQRITLGSLGLPKTSKNVGFDILLE-S 121 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178 G T F Q++ + A + E+ARTI+S+ I A V+I MP F + G P+ASV + Sbjct: 122 PVGETPFTQDMKYLIAKQNELARTIESLRPIEKAIVNISMPKESLFVQGGHPPSASVKLT 181 Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME------RNILGKS 230 + + ++HLVAAAV L +V +++ G+LL + Sbjct: 182 VRDNMFLSTEQVIGVKHLVAAAVERLTPENVKIINQEGELLGEEDEAALQGVLAKKAAFQ 241 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290 QA ++ +E I K L +G ++ V + + + + +D + + Sbjct: 242 RRYQQAAENAMEAKIIKFLQPSVGDG-VQAQVTMDYDFSVRNSTQEEFDQNPVIRGIREY 300 Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 K+ + Q V N+ V K +E + E N EI K + + Sbjct: 301 EKERKGFRPPQIGGVPGVVSNIGPVQGLKD--DEMMEWEKESEVVQNNEIGKKVSSISEH 358 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQ-----GKIDSYLAEINKIVSAATGINSRRGDT 405 L+R+S +V+++ G EV+G + + + + + V A G N RGD Sbjct: 359 YGVLKRVSASVMID-GTYEEVVGEDGETRLEYSPRSQEDMDKFLEGVKKAIGYNEARGDQ 417 Query: 406 ITITSMDFLENQLFNSG-TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 + + +M F QL +F D + R+ + + L +++ +++ +++ Sbjct: 418 VEVINMPFRNTQLDYRPKDAWEAFSDKVERYLSPFMPLLKYVIVAVILLVF----YKKIV 473 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 + EV + + N L +D S L ++ Sbjct: 474 APFAERMLEVQEEEDDDIESLMQIDDDDDDLNKFSELRKRVEDQLGLSSGLDE--DNIKY 531 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDRYT 559 + ++ ++I + A + + + E++ Sbjct: 532 EVLLEKMRNVISERPQEIASLFQTLIKDELDITEG 566 >gi|317121815|ref|YP_004101818.1| flagellar M-ring protein FliF [Thermaerobacter marianensis DSM 12885] gi|315591795|gb|ADU51091.1| flagellar M-ring protein FliF [Thermaerobacter marianensis DSM 12885] Length = 560 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 121/516 (23%), Positives = 203/516 (39%), Gaps = 29/516 (5%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSS 105 P ++ L+ +L+ +D I L E + ++++ G +I VP + V + R+ LAAQGLP Sbjct: 61 PRWEPLFTRLDPADAAAIVSQLEEKGVPYQLAQGGQAILVPGTEVDRLRLELAAQGLPRE 120 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 + G EL D + G T F +++ VR L+GE+ARTI + G+ AARVH+V+P+ F Sbjct: 121 GT-VGLELMDSI-PMGATEFERQVQYVRGLQGELARTISRLDGVEAARVHVVLPEDSPFV 178 Query: 166 KIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA---- 219 TA+V+++ + + +I HLVA+AV L DVTV+D+TG+LL+A Sbjct: 179 GQRRPATAAVLVQLKPGASLAPEQVRSIMHLVASAVEGLKPEDVTVVDTTGRLLSAEVPP 238 Query: 220 -NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 + G I + + E++ ++ L LG N + V AELN D Q I ++ Sbjct: 239 EEGQGAVVQGDRFEIERRFEQELQQSLQTLLEQVLGPGNVIARVNAELNFDQQVIERHLF 298 Query: 279 DPDSKVERSIRLSKDAQRSETSQPESAVTVE--QNMPHVSDRKVPLPRSLENTDKKEEQS 336 P + + I S + + V V N+P L + E + Sbjct: 299 QPPADGGQGILRSIQELQETFTGQGVPVGVPGDSNIPTY----PQLVGGTGQYQRTERTA 354 Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT 396 NYEIN + RLS+AVVVN + Sbjct: 355 NYEINEVVDRVQVAPGAVRRLSVAVVVNGDLTPQRQQALQQAVAAA-------------I 401 Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456 G + +R D + + M F + + + + + V LL L Sbjct: 402 GTDPQRQDQVEVVGMPF-DTSVADRLQQSLDEERQAREQARRMALLAGAAVLALLALGLL 460 Query: 457 LHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ 516 + RR A G + + A + + Sbjct: 461 VAVWRRRRAARRAAAEAQMGGLGVPVQGMPGAGGLPGAVPPAAPAGAGAVGGPAAGAAAA 520 Query: 517 SRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 + ++ +++ E A+++R W Sbjct: 521 WANGRAADAAAYDQVAELVKNQPEHVAQVIRSWLAE 556 >gi|15642994|ref|NP_228036.1| flagellar M-ring protein [Thermotoga maritima MSB8] gi|4980719|gb|AAD35313.1|AE001706_12 flagellar M-ring protein [Thermotoga maritima MSB8] Length = 532 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 103/484 (21%), Positives = 202/484 (41%), Gaps = 28/484 (5%) Query: 1 MAILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLE 56 M I+++L +K S+ R R ++ + + ++ + + PHY L L Sbjct: 1 MNIVERLRDLWKKIVDLWNSMPRERKFLVGGIGIALVIAIVLFAVVASVPHYRLLVSGLN 60 Query: 57 VSDVNRISVALSEANIDFRISDNGSSISVPSS-MVGKARIHLAAQGLPSSSSNSGYELFD 115 + I L E N+ +++S G I VP S V + R+ LA++G+ SS G+ + Sbjct: 61 EDEAGVIIQKLEEMNVPYKVSPGGD-IYVPDSYNVYELRMKLASEGV-LGSSRKGFSIL- 117 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK-IGARPTAS 174 NSFG TSF +++ AL+ E+ R+I +I G+ ARVH+V+P + + A P AS Sbjct: 118 SENSFGATSFDKQVKYQIALQEELERSIMTIKGVKDARVHLVLPKYTYYVRGEMAEPRAS 177 Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGK 229 V++ + I LV+ AV L +V V+D+ + L+ + + Sbjct: 178 VLVVLEPGAELTREQVRGIVELVSGAVEGLKPENVRVVDNYSRSLSDMLETDEGTFLASS 237 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 L + Q ++ E I KAL + G +N + Y+ ++ E +R Sbjct: 238 KLELKQQLEKYYESKIKKALESVFGPGRVEVIPDISINWSKIETEMKKYEAPARREGLVR 297 Query: 290 LSKDAQRSETSQPE--SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 + + P + N+P ++ V + ++ +NYE+N Sbjct: 298 SQETQVEKSQNLPPTGGPAGTDSNIPPLTYPSVTSEGT-STYERTHTITNYELNEVYQKI 356 Query: 348 THDN-YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG-INSRRGDT 405 + ++ LS+AV+++ S+ + + IN +V G I S + Sbjct: 357 IQNREGEISSLSVAVIID--------ASSSVLQNSSDWSSVINDLVEKGVGSITSSASLS 408 Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465 + + + F + + + ++ ++ R + + T ++ +L + +RR+ Sbjct: 409 VAVAFLPF-DRSIERALQEELKQIETRRRFVLYSVGIALLGFLTFMLIYLMIVQIRRIRA 467 Query: 466 IDDA 469 A Sbjct: 468 RKLA 471 >gi|188589083|ref|YP_001920202.1| flagellar MS-ring protein [Clostridium botulinum E3 str. Alaska E43] gi|188499364|gb|ACD52500.1| flagellar M-ring protein FliF [Clostridium botulinum E3 str. Alaska E43] Length = 520 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 118/562 (20%), Positives = 231/562 (41%), Gaps = 54/562 (9%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 +L+++ ++ S + + + + I+ ++ + +S Y L+ L+ D Sbjct: 3 KLLEKVKGLWEKFKSQSKKIKIAIFISCVAVIIAIISTMIYTSSNKYQVLFSNLDPKDAQ 62 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L+E + +I G +I VP+ V + R+ LA + S +SGYEL D +SFG Sbjct: 63 TILAKLNEQKVTTKIQ--GDTILVPNDKVDQLRLELAPE---LKSGSSGYELMDSGSSFG 117 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 +T ++ ++R EGE+ +TI+S S I +ARVHI F K A+V + Sbjct: 118 MTDEEFKVKKLRMQEGELEKTIKSFSQIESARVHITPSTDSVFVKESTPGKAAVYLELKT 177 Query: 182 PS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-------RNILGKSLS 232 S ++I LV+ + N+ ++ V+D LLTAN + L K S Sbjct: 178 GSEITKDQVKSIVALVSGSTENVPKENIEVIDDKMNLLTANLNDDENEVMSSESLDKQYS 237 Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292 + + + +++ I L +G D ++ V +L+ D++Q + V DP+ KV S + K Sbjct: 238 LEKNYEGKLQKEIVSLLEPVIGKDKVKATVNVDLDFDSKQQTQTVLDPN-KVVVSQQTIK 296 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 + + S V+ N+ S+ + N+ ++E+++NYEI Sbjct: 297 EVNNTGADGNISESPVDNNI---SNTTDDTNNTNSNSSREEQKNNYEIGKTETKVISAPG 353 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 +++R++ +VVV+ + I VS A G NS RGD I++ M+ Sbjct: 354 EVKRMTASVVVDGN-------------LDAATQQAIENAVSNAIGFNSVRGDQISVLGMN 400 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F + L QV + ++ +G AL + + Sbjct: 401 F-DPSLKEDAQSQVDAFNAEAKQKEMQK-----------YMIMGAIALIAIIIVIVILVK 448 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 + + + + + + I ++N ++ + + + K + + Sbjct: 449 KRRKNAADEYDDETQLLDVVIGDEKEAEIFEP---IEFETKNEKTHMENEIKKYATDK-- 503 Query: 533 HMIEINEERFAKILRKWARSEI 554 E+ +I++ W + Sbjct: 504 ------PEQVVEIIKSWLSEDE 519 >gi|254458688|ref|ZP_05072112.1| flagellar M-ring protein FliF [Campylobacterales bacterium GD 1] gi|207084454|gb|EDZ61742.1| flagellar M-ring protein FliF [Campylobacterales bacterium GD 1] Length = 570 Score = 307 bits (787), Expect = 3e-81, Method: Composition-based stats. Identities = 127/569 (22%), Positives = 238/569 (41%), Gaps = 28/569 (4%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH--YDNLYVKLEVSDV 60 + QL+ + TS R I A + +V ++FM + Y+ L+ L D Sbjct: 6 LFSQLVVLYTKLTSQQRIIIAA-AIIGIVSFLIFMVVYTAKKNTDDEYEILFNSLSSEDA 64 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +I L + I +++ DN + I VP +V K RI +A+ G+P + G+ELFD F Sbjct: 65 AKIVDQLEKDGIVYKLEDN-NIIKVPKDIVYKERITIASMGIPKN-RGVGFELFD-TQEF 121 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 G TSF Q + +RALEGE++RTI ++ I +A V + +P F P+ASVM++ + Sbjct: 122 GATSFDQNVKYLRALEGELSRTINALGPIESASVSLAIPKDTLFIAKQVDPSASVMVQLV 181 Query: 181 NPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI- 237 K I++LVA+AVP + V +++S G+ L +E E +G+ ++ Q Sbjct: 182 EEQRLSPKQIRGIKNLVASAVPKMKASAVMLINSEGETL-GDEDEMAQMGELSTVQQKFK 240 Query: 238 ---QHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293 + + + I + ++ F+ G + + V E + Q YDP++ V RS ++S++ Sbjct: 241 TKEEKKRQSKIIQVISPFVGGEEKVVAQVTIEFDFSIQNSTSETYDPEN-VVRSEQVSEE 299 Query: 294 AQRSET-SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 + + ++ N+ V K ++ E +K +NYE+ T Sbjct: 300 KREGGSPAEIGGVPGTVSNIGPVQGLK--SNQTNEKYEKNTGTTNYEVGKTVSTTKSQFA 357 Query: 353 KLERLSIAVVVNKGR--LTEVLGRSAD----QGKIDSYLAEINKIVSAATGINSRRGDTI 406 +++R+S AV+V+ + G+S D + +S L + +V + GIN +RGD I Sbjct: 358 RIKRISAAVIVDGKYKFKLDAEGKSTDELEYEPLQESDLDALASLVGRSIGINDQRGDQI 417 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 ++ ++ F + + A ++ +L+ L + Sbjct: 418 SVKNLQFKRGDTHIEADGVSQAVTFSQTYLAPFSGVFKYVFVLILLLILYKKVISPFALR 477 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 E + P + + + + + Sbjct: 478 MLEVSKE--DDDLDRPTLDIDDDEEEDLVEKVQMMRKKVESQLGVGDGFNE--DELKHEV 533 Query: 527 SDLRLLHMIEINEERFAKILRKWARSEIE 555 ++ +M E E A +L+ E + Sbjct: 534 LLEKVRNMAEDAPEEIAALLQSLLTEEED 562 >gi|251779126|ref|ZP_04822046.1| flagellar M-ring protein FliF [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083441|gb|EES49331.1| flagellar M-ring protein FliF [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 520 Score = 307 bits (787), Expect = 3e-81, Method: Composition-based stats. Identities = 118/562 (20%), Positives = 231/562 (41%), Gaps = 54/562 (9%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 +L+++ ++ S + + + + I+ ++ + +S Y L+ L+ D Sbjct: 3 KLLEKVKGLWEKFKSQSKKIKIAIFISCVAVIIAIVSTIIYTSSNKYQVLFSNLDPKDAQ 62 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L+E + +I G +I VP+ V + R+ LA + S +SGYEL D +SFG Sbjct: 63 TILAKLNEQKVTTKIQ--GDTILVPNDKVDQLRLELAPE---LKSGSSGYELMDSGSSFG 117 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 +T ++ ++R EGE+ +TI+S S I +ARVHI F K A+V + Sbjct: 118 MTDEEFKVKKLRMQEGELEKTIKSFSQIESARVHITPSTDSVFVKESTPGKAAVYLELKT 177 Query: 182 PS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-------RNILGKSLS 232 S ++I LV+ + N+ ++ V+D LLTAN + L K S Sbjct: 178 GSEITKDQVKSIVALVSGSTENVPKENIEVIDDKMNLLTANLNDDENEMMSSESLDKQYS 237 Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292 + + + +++ I L +G D ++ V +L+ D++Q + V DP+ KV S + K Sbjct: 238 LEKNYEGKLQKEIVSLLEPVIGKDKVKATVNVDLDFDSKQQTQTVLDPN-KVVVSQQTIK 296 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 + + S V+ N+ S+ + N+ ++E+++NYEI Sbjct: 297 EVNNTGADGNISESPVDNNI---SNTTDDTNNTNSNSSREEQKNNYEIGKTETKVISAPG 353 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 +++R++ +VVV+ + I VS A G NS RGD I++ M+ Sbjct: 354 EVKRMTASVVVDGN-------------LDAATQQAIENAVSNAIGFNSVRGDQISVLGMN 400 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F + L QV + ++ +G AL + + Sbjct: 401 F-DPSLKEDAQSQVDAFNAEAKQKEMQK-----------YMIMGAIALIAIIIVIVILVK 448 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 + + + + + + I ++N ++ + + + K + + Sbjct: 449 KRRKNAANEYDDETQLLDVVIGDEKEAEVFEP---IEFETKNEKTHMENEIKKYATDK-- 503 Query: 533 HMIEINEERFAKILRKWARSEI 554 E+ +I++ W + Sbjct: 504 ------PEQVVEIIKSWLSEDE 519 >gi|260772323|ref|ZP_05881239.1| flagellar M-ring protein FliF [Vibrio metschnikovii CIP 69.14] gi|260611462|gb|EEX36665.1| flagellar M-ring protein FliF [Vibrio metschnikovii CIP 69.14] Length = 500 Score = 307 bits (786), Expect = 3e-81, Method: Composition-based stats. Identities = 103/519 (19%), Positives = 217/519 (41%), Gaps = 34/519 (6%) Query: 48 YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 L E ++ + L + ++R+ +G++I VPS R+++ GL + Sbjct: 1 MRPLGA-FETEELIPVLDYLDQQKQNYRL--DGNTILVPSKDFNSIRLNMVRSGL-HQTR 56 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 ++G ++ + FG++ +++ + E ++A+ I+ + + ARV + +P F + Sbjct: 57 HAGDDILLQDMGFGVSQRLEQERLKLSRERQLAKAIEEMRQVNRARVLLALPQQSVFVRH 116 Query: 168 GARPTASVMIRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-- 223 +ASV + K ++I +VA+AVP + VTV D G+LL++ + Sbjct: 117 NQEASASVSLTLRTGMNLKQEEVDSIVDMVASAVPGMRPTRVTVTDQHGRLLSSGSQDPI 176 Query: 224 RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK 283 K + + + + I+ L LG+ N+ + V EL+ + V+DP++ Sbjct: 177 ATARRKEQELERRQEENLRNKIDSVLIPILGLGNYTAQVDIELDFSAIEQTRKVFDPNTP 236 Query: 284 VERSIRLSKDAQRSE---------TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEE 334 RS +D ++QP + ++ Q++ + D + S+ +E Sbjct: 237 ATRSEYTLEDYNNGNVVAGIPGALSNQPPADASIPQDIAQMKDGSILGRGSV----HREA 292 Query: 335 QSNYEINTKSIATTHDNYKLERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVS 393 N+E++T + R ++AV + N+ + G+ Q +S + I ++ Sbjct: 293 TRNFELDTTISHERRQTGVINRQTVAVAIKNRAVVNPETGQVTYQALSESEINAIRTLLI 352 Query: 394 AATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVT 453 G N RGD + + SM F E + + + + + +ALV +V L++ Sbjct: 353 GTVGFNENRGDLLKVLSMQFAEPETDPLIDIPIWENPHFNDWVRWLASALVIIVIVLVLV 412 Query: 454 FLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR 513 A+++L N ++ G L PI + T L I D D+F Sbjct: 413 ---RPAMKKLLNPVVDDDDQLYGPDGL---PIGADGETSL-----IGSDIEGGDLFEFGS 461 Query: 514 NLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 + N + + + ++ E A++++ W ++ Sbjct: 462 GIDLP-NLHKDEDVLKAVRALVANEPELAAQVVKNWMQN 499 >gi|253682590|ref|ZP_04863387.1| flagellar M-ring protein FliF [Clostridium botulinum D str. 1873] gi|253562302|gb|EES91754.1| flagellar M-ring protein FliF [Clostridium botulinum D str. 1873] Length = 524 Score = 307 bits (786), Expect = 4e-81, Method: Composition-based stats. Identities = 123/565 (21%), Positives = 239/565 (42%), Gaps = 56/565 (9%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 I +Q + F+ L + + + + ++L I+ + +N+ Y LY ++ +D Sbjct: 3 KIKEQFRKLFEKFKELSKIKKIAFSILVLGIIIGIVYLVISLNTTKYAVLYKDMDPNDAQ 62 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 + L++ +++++ +N SI VP + R+ LA Q +S + GYE+ D ++FG Sbjct: 63 TVMAKLADKKLEYKVENN--SIKVPEDKAAELRMELAPQ---LTSGSKGYEILDDGDTFG 117 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 +T +E+ RALEGE+AR I+S+ + A+V +VM G+F K +ASV + Sbjct: 118 MTDKERELKYKRALEGELARDIKSLPEVKEAKVLLVMQQEGNFFKQEDPGSASVTLEFET 177 Query: 182 PS--VYKSAEAIRHLVAAAVPNLDMGD---VTVLDSTGKLLT-------ANEMERNILGK 229 + +AI LV+ +V NL + V V++ + L+ N+ ++ K Sbjct: 178 GKKVTKEQIKAIVALVSGSVKNLPKENIKVVGVVNGKTQDLSEDLFKEDGNKDISSVTEK 237 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 + + ++ E I L G ++AV ++N D + ++DP++ V RS Sbjct: 238 QENYKKNLEKEYVKKIMNVLTPKYGEG-VKAAVNVDVNFDASEKTSTLWDPNN-VVRSEE 295 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 KD + S+ S+ SA V+ NM + + K S ++ NYE+ Sbjct: 296 TEKDTENSKGSK-TSASPVDNNMSNTYNSKDENGTST----HEKTTKNYEVGKIEQKVVG 350 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 K++++S +V +N D+ +IN +V+ A + RGD +++ Sbjct: 351 APGKIKKISASVTIN------------DENLSPVDKDKINSLVAGAISYDESRGDIVSVE 398 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 M F E ++ + I L G+ A R + Sbjct: 399 GMKFNEVNESDAAEEAKKKAEEQKAKEKAFIYKCAGGALLALAIIAGIVAFIRKRRKKNE 458 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 + EV SI ++ +DN+ + + S + + ++ N+YV K+ Sbjct: 459 SEEEVVSDSID------------MLIDDNV---EPTEQLKSINFDEENE-NTYVEKE--- 499 Query: 530 RLLHMIEINEERFAKILRKWARSEI 554 + E+ +I++ W + Sbjct: 500 -IKKYATEKPEQVVEIIKAWMAEDE 523 >gi|315638805|ref|ZP_07893977.1| flagellar M-ring protein FliF [Campylobacter upsaliensis JV21] gi|315481023|gb|EFU71655.1| flagellar M-ring protein FliF [Campylobacter upsaliensis JV21] Length = 564 Score = 307 bits (786), Expect = 4e-81, Method: Composition-based stats. Identities = 119/574 (20%), Positives = 232/574 (40%), Gaps = 26/574 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSP----HYDNLYVKLE 56 M + LLQ + +L R + +++A+ I+V + + F N P Y L Sbjct: 5 MDFKNMLLQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRNGPAGSNGYVPLIENAN 64 Query: 57 VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 S I L + + +R+ + S+I VP V + ++ +A++GL + G+E+FDK Sbjct: 65 PSTAGAIVTRLEQNGVPYRLENE-STILVPQDQVNRQKMFIASEGLIKDNR-VGFEVFDK 122 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 FG TS +++ RAL+GEIAR I+++ I +A V + +P F + PTASV Sbjct: 123 -QIFGATSAEEKVRAQRALQGEIARIIETLEPIRSASVILALPKESVFTERQIPPTASVT 181 Query: 177 IRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSI 233 I + K + ++++VAA+VP L +V + D G L ++E +L + Sbjct: 182 INIKDGFRLTRKQIDGVKNIVAASVPRLTKENVKISDQNGNTLDEQQLESGEVLAMQIRY 241 Query: 234 VQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292 + + E+E I +LA F G D + +V E + Q+ + +YDP++ V L++ Sbjct: 242 KRDSERELEEKIINSLAPFAGGRDKLQVSVNIEYDFSKQESKSEIYDPNTVVRSEQTLNE 301 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 + + + + N+ V + +++ K + +N EI+ T Sbjct: 302 EKTGRKDPEIQGVPGAVSNIGPV--EGLANNGVIDSYKKNQVTTNNEISKTITNTQKSFG 359 Query: 353 KLERLSIAVVVNKGRL----TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 R+S AV ++ +S + L + IV N+ RGD++ + Sbjct: 360 VPLRISAAVTIDGKYEDVVDENGEVKSEYVPLPQAQLNGVESIVRNTINFNAARGDSVVV 419 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 ++ F + V+ R I + + + +L+ F + Sbjct: 420 QNLPFYRESIKVESKVKT----FYGRFIEPFIPPVKYFIAAILLFFFYKKVIAPFTQKML 475 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 + + P + N A + + + I V + Sbjct: 476 --EDVAAQEEAQQGPNAIIDDAEDALEKFNAARKKVEEQLGFGENFNEDSIQYDVLLE-- 531 Query: 529 LRLLHMIEINEERFAKILRKWARSEIEDRYTQHI 562 +L ++ E A +L+ +++ + + I Sbjct: 532 -KLRALVSDKSEEIAALLQNLIQNDSDFSENKDI 564 >gi|294084401|ref|YP_003551159.1| flagellar M-ring protein FliF [Candidatus Puniceispirillum marinum IMCC1322] gi|292663974|gb|ADE39075.1| flagellar M-ring protein FliF [Candidatus Puniceispirillum marinum IMCC1322] Length = 572 Score = 306 bits (785), Expect = 4e-81, Method: Composition-based stats. Identities = 117/549 (21%), Positives = 224/549 (40%), Gaps = 29/549 (5%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 R + A++I LF+ F+ +P LY L S+ R+ AL + ++ + Sbjct: 39 RRALPTFAAIIFAVAGLFVFV--FMQAPQRTTLYASLPESEKARVVEALINSGVEVTLDP 96 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 + VP+S +A++ LAAQGLP+S + + G + ++ + ++ E E Sbjct: 97 TTGDVLVPTSDFHQAKMSLAAQGLPTSVPDGYASV--GDIPMGSSRSVENVRLKQSQEIE 154 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLVA 196 +AR+I I G+V+ARVH+ +P+ F + PTASV I+ N + EA+ HLV+ Sbjct: 155 LARSIGEIDGVVSARVHLAIPEKSVFARNATPPTASVFIQMNNGRTLGSQQVEAVVHLVS 214 Query: 197 AAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLG 254 ++VP++ DVTV+D G LL+ N+M + L +++ + ++ +G Sbjct: 215 SSVPSMAKTDVTVVDQFGALLSNPTNDMASLLSDSQLQHRIRLENIYRNRVISLVSPIVG 274 Query: 255 VDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPH 314 N S + +++ + E DPD RS + S D + ++ N P Sbjct: 275 AGNVTSQINIDIDYTRSETTEERVDPDGNALRSEQKSVDMKSDANAR--GIPGATANRPP 332 Query: 315 VSD------RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV-NKGR 367 + + +T E NYE++ T + ++ + AV+V +K Sbjct: 333 LQSEIDSVQADDAGAKGSVSTQSSNEVRNYEVSRTVSTTQSPSTRIVGIQAAVLVRDKEV 392 Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN-QLFNSGTVQV 426 + G LAEI K+V+ A GI++ RGD +T++S F+ + + Sbjct: 393 VNPETGLMEVVPFTPEKLAEIEKLVANAIGIDAERGDKLTVSSSAFVSAIEGVTKAWYDM 452 Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486 + L + T++ V ++G + R L + Sbjct: 453 EWAINLMKQGMTLLIMGVVVLGVI----------RPLIGRIMVPAAVGAPGEAMVSLDDD 502 Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE-ERFAKI 545 + D + + +++ + + ++ MI +E R + + Sbjct: 503 LGGEAIEVQEGESLEDIKAKLKPKKAAISAEMLDTANTYDDKVAVIRMIVGDEAGRVSNV 562 Query: 546 LRKWARSEI 554 + +I Sbjct: 563 FKSMMERDI 571 >gi|169831911|ref|YP_001717893.1| flagellar MS-ring protein [Candidatus Desulforudis audaxviator MP104C] gi|169638755|gb|ACA60261.1| flagellar M-ring protein FliF [Candidatus Desulforudis audaxviator MP104C] Length = 518 Score = 306 bits (785), Expect = 4e-81, Method: Composition-based stats. Identities = 124/546 (22%), Positives = 212/546 (38%), Gaps = 45/546 (8%) Query: 12 KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71 + +L T + L +++ +++ FV +Y L+ LE + I L Sbjct: 12 ERWQALSTTHKVALVLLVIGSLLVLYYLAQFVRQMNYTTLFAGLEPREAGAIVEQLDGMR 71 Query: 72 IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131 I + +SD G++I VP + V +ARI LA G + +G+ELFD+ G+T F Q++ Sbjct: 72 IPYMLSDGGTTIQVPRAQVDQARIQLATSG-ALGADGAGWELFDRT-KLGVTEFEQQVNY 129 Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYKSAE 189 RAL+ E+ RTI + + AARVH+V+P+ F A PTASV ++ Sbjct: 130 QRALQEELRRTIVQLDEVEAARVHLVLPEKSIFATEKAPPTASVAVKLRPGTDLNQSQVR 189 Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL---SIVQAIQHEIEMNIN 246 + LVA +V L +V ++D G+LL + + + G +L I + + E+EM + Sbjct: 190 GVVALVAGSVEGLTPENVHLVDMRGRLLHPDGHQDPVSGLALTHQEIKRNYERELEMRLQ 249 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306 L +G D V A+L+ QQ V +++V + ++++ S T Sbjct: 250 NMLQRIVGPDRVVVMVSADLDFSQQQSVSTVPYGEAQVVSEQTVREESEGSGTGGGVPGT 309 Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 + + + + ++E +NY++ T ++ RLS +VVV+ Sbjct: 310 DANLPATYPLAGRPADAGAPTSFVREERTANYQVGTLQQTVIQPPGEVRRLSTSVVVDGD 369 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 + +I +V+AA G N RGD I + M F T Q Sbjct: 370 -------------LSAARAEQIQGVVTAALGYNPERGDQILVAPMAF-------DTTYQE 409 Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486 + L R A R+L G + IL + Sbjct: 410 QLEEDLRRAEALAAE----------------RERRQLIYYAALAGGVLLLLIILIIAGVV 453 Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546 P + S + + KQ R + E A+I+ Sbjct: 454 VGRRLQRAPRPQPQPEVEELSPLSVAAAAADPVFFLSDKQRGAR--ELARQKPEEVAQII 511 Query: 547 RKWARS 552 + W Sbjct: 512 KVWLTE 517 >gi|57506034|ref|ZP_00371957.1| flagellar M-ring protein FliF [Campylobacter upsaliensis RM3195] gi|57015642|gb|EAL52433.1| flagellar M-ring protein FliF [Campylobacter upsaliensis RM3195] Length = 560 Score = 306 bits (785), Expect = 4e-81, Method: Composition-based stats. Identities = 119/574 (20%), Positives = 232/574 (40%), Gaps = 26/574 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSP----HYDNLYVKLE 56 M + LLQ + +L R + +++A+ I+V + + F N P Y L Sbjct: 1 MDFKNMLLQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRNGPAGSNGYVPLIENAN 60 Query: 57 VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 S I L + + +R+ + S+I VP V + ++ +A++GL + G+E+FDK Sbjct: 61 PSTAGAIVTRLEQNGVPYRLENE-STILVPQDQVNRQKMFIASEGLIKDNR-VGFEVFDK 118 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 FG TS +++ RAL+GEIAR I+++ I +A V + +P F + PTASV Sbjct: 119 -QIFGATSAEEKVRAQRALQGEIARIIETLEPIRSASVILALPKESVFTERQIPPTASVT 177 Query: 177 IRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSI 233 I + K + ++++VAA+VP L +V + D G L ++E +L + Sbjct: 178 INIKDGFRLTRKQIDGVKNIVAASVPRLTKENVKISDQNGNTLDEQQLESGEVLAMQIRY 237 Query: 234 VQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292 + + E+E I +LA F G D + +V E + Q+ + +YDP++ V L++ Sbjct: 238 KRDSERELEEKIINSLAPFAGGRDKLQVSVNIEYDFSKQESKSEIYDPNTVVRSEQTLNE 297 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 + + + + N+ V + +++ K + +N EI+ T Sbjct: 298 EKTGRKDPEIQGVPGAVSNIGPV--EGLANNGVIDSYKKNQVTTNNEISKTITNTQKSFG 355 Query: 353 KLERLSIAVVVNKGRL----TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 R+S AV ++ +S + L + IV N+ RGD++ + Sbjct: 356 VPLRISAAVTIDGKYEDVVDENGEVKSEYVPLPQAQLNGVESIVRNTINFNAARGDSVVV 415 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 ++ F + V+ R I + + + +L+ F + Sbjct: 416 QNLPFYRESIKVESKVKT----FYGRFIEPFIPPVKYFIAAILLFFFYKKVIAPFTQKML 471 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 + + P + N A + + + I V + Sbjct: 472 --EDVAAQEEAQQGPNAIIDDAEDALEKFNAARKKVEEQLGFGENFNEDSIQYDVLLE-- 527 Query: 529 LRLLHMIEINEERFAKILRKWARSEIEDRYTQHI 562 +L ++ E A +L+ +++ + + I Sbjct: 528 -KLRTLVSDKSEEIAALLQNLIQNDSDFSENKDI 560 >gi|213622939|ref|ZP_03375722.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 344 Score = 306 bits (783), Expect = 8e-81, Method: Composition-based stats. Identities = 86/303 (28%), Positives = 147/303 (48%), Gaps = 9/303 (2%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 44 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 103 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 104 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 161 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + A+ HLV++AV L G+VT++D +G LLT Sbjct: 162 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 221 Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 +N R++ L ++ I+ I L+ +G N + V A+L+ ++ E Sbjct: 222 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 281 Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP-HVSDRKVPLPRSLENTDKKE 333 Y P+ ++ S+ SE P N P ++ + P + + + Sbjct: 282 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 341 Query: 334 EQS 336 Q+ Sbjct: 342 PQT 344 >gi|149201593|ref|ZP_01878567.1| Flagellar FliF M-ring protein [Roseovarius sp. TM1035] gi|149144641|gb|EDM32670.1| Flagellar FliF M-ring protein [Roseovarius sp. TM1035] Length = 564 Score = 306 bits (783), Expect = 9e-81, Method: Composition-based stats. Identities = 116/562 (20%), Positives = 224/562 (39%), Gaps = 41/562 (7%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + R + A +L+ + L +AA + + L+ L ++ + AL+ A Sbjct: 28 MDGFIAQPALRRALPAIGVLLVVTLGLAAWLLLAPANRVTLHAGLPEAEKSLALDALTAA 87 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 +D R+ + +++V + AR+ LA QGLP +++ + G + ++ Sbjct: 88 GMDARLDPSSGALTVAADQFHSARMLLATQGLPEGATDGMSAI--DEMPMGTSRQIESAR 145 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE- 189 R E ++AR+IQ + + AARVH+ +P+ +F + P ASV + A+ Sbjct: 146 LRRMQELDLARSIQELRPVRAARVHLALPERSAFVRDSQPPRASVFLELAPGMALDQAQV 205 Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNIN 246 AI LVAAAVP++ G+V+V+D TG LLT+ E + ++ + + + ++ + Sbjct: 206 RAIVSLVAAAVPDMPRGNVSVVDQTGTLLTSPEEDPVQSEADRQMQHQRRLETLYRDRVL 265 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE-TSQPESA 305 L +G N V +++ +I Y PD+ + S+ ++ P + Sbjct: 266 SLLTPIVGAGNAAVEVTLDMDFTRSEITSEEYLPDTALRSEQSSSQQTSGAQAGGIPGAV 325 Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN- 364 N +++ +S NYE++ + ++ R+ AV+++ Sbjct: 326 ANTPPNEAQMAEAATQGAKSGTTNSATSSTRNYEVSRRVETRQPQTAQINRVHAAVLLHR 385 Query: 365 -KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ--LFNS 421 G + LAEI + +A G N+ RGD +T+ S F+ + Sbjct: 386 LPTPAAPAEGEATSAAPEAVPLAEIEALTRSAIGYNAERGDIVTVASAPFVVAPSVISAE 445 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 +++ L R A + L + L +R + N Sbjct: 446 RWYDAAWLPTLGRTLAQLA----------LFGIIVLGVVRPILNR--------------L 481 Query: 482 PPPISSAVTTGLMPNDNI------ALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 PP+ + TTG+ D I +L + Q + + + N + + ++ L M Sbjct: 482 LPPVGATATTGMTYGDAIEVPRGESLSALRQRLETAAPNAEDLNGAITYEEKIDLLRQMA 541 Query: 536 EINEERFAKILRKWARSEIEDR 557 R A + + EDR Sbjct: 542 GSETNRIAGVFKSMITPTGEDR 563 >gi|295399809|ref|ZP_06809790.1| flagellar M-ring protein FliF [Geobacillus thermoglucosidasius C56-YS93] gi|312111679|ref|YP_003989995.1| flagellar M-ring protein FliF [Geobacillus sp. Y4.1MC1] gi|294978212|gb|EFG53809.1| flagellar M-ring protein FliF [Geobacillus thermoglucosidasius C56-YS93] gi|311216780|gb|ADP75384.1| flagellar M-ring protein FliF [Geobacillus sp. Y4.1MC1] Length = 529 Score = 305 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 113/573 (19%), Positives = 217/573 (37%), Gaps = 75/573 (13%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L++ F+K T + + +++L+ I A FF LY L + +I Sbjct: 9 LNRFTLFWKERTKKQKWIAVASLALLLLIIG---ATVFFATRTEMVPLYSNLTPQEAGQI 65 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L + NI ++DNG++I VP + ++ LAA+G+P+S Y F K SFG+T Sbjct: 66 KETLDQRNIKSEVADNGTTIKVPKDLADSLKVELAAEGIPNSGM-IDYSFFGKNASFGMT 124 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA-RPTASVMIRAINP 182 + ++ A++ E+A I+SI+G+ A+V I +P F +AS++++ Sbjct: 125 DNEFNVVKLEAMQNELANLIKSINGVEDAKVMINLPQPSVFASDNQGEASASIVLKTKPG 184 Query: 183 S--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG----KSLSIVQA 236 + +A+ HLV+ +VPNL ++ +++ + E+N G I Q Sbjct: 185 YQFSDQQIKALYHLVSKSVPNLPTDNIVIMNQFFEYFDLKNDEKNSTGTTFAAQQEIKQQ 244 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIRLS 291 I+ +I+ + + L +G D +V A+++ ++ E + P + + S++ Sbjct: 245 IERDIQQRVQRMLGTMMGQDKVAVSVTADIDFTQERREENLVAPVDEENNEGIAISVQRI 304 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 ++ + P N V + + + N ++ EE N E+N Sbjct: 305 QETYSGNGAPPGGTAGTGAN--EVPNYQAGANEANGNYERTEETINNEVNRIKKNIVESP 362 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT---- 407 YK+ L I V+V + S Q ID + IV + + + G T+T Sbjct: 363 YKIRDLGIQVMVEPPDPKDP--NSLPQQTIDDIQKILGTIVRTSI--DKQYGQTLTDQDI 418 Query: 408 -----ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 ++ F F + I + LV + + L + + Sbjct: 419 QNRVVVSVQKFNGKATFEEPKPAIPMW--------VYIVGGIGLVLLITLFILWWRSRK- 469 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 +D + + I+ Sbjct: 470 ---------------------------------SDEEEEEEEEEIFEQPMVQEIPDIHEQ 496 Query: 523 VSKQSDLR--LLHMIEINEERFAKILRKWARSE 553 ++ + R L + + + FAK+LR W E Sbjct: 497 ETESTMRRKQLERLAKEKPDEFAKLLRTWLSEE 529 >gi|237666941|ref|ZP_04526926.1| flagellar M-ring protein FliF [Clostridium butyricum E4 str. BoNT E BL5262] gi|237658140|gb|EEP55695.1| flagellar M-ring protein FliF [Clostridium butyricum E4 str. BoNT E BL5262] Length = 520 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 112/562 (19%), Positives = 242/562 (43%), Gaps = 54/562 (9%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 +L+++ + F+ S + + + + I ++ ++A F+ S Y L+ L+ +D Sbjct: 3 KLLEKVKELFEKFKSQNKKIKIAVIASIAAVLIAIVSAVFYSTSNKYAVLFSNLDTTDAK 62 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 + L+ ++ +I + ++I VP + V K ++ LA S ++GYEL D+ +SFG Sbjct: 63 TVVDRLTTEKVESKIDSSTNTIWVPKNQVDKLKLELAPD---LKSGSTGYELMDEQSSFG 119 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 +T ++ + R LEGEI + I+S+ I A+V+I D F K A +A+V I+ Sbjct: 120 MTDEEFKLKKKRMLEGEIEKVIKSLEPIENAKVNITEADNSVFVKDKAVGSAAVTIKLKE 179 Query: 182 PSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-------EMERNILGKSLS 232 + +AI +V+ ++ N+ +VTV+D LLT + + + K Sbjct: 180 GATLTDDQVKAIVAVVSTSIENVPKENVTVIDQNSNLLTRDLNEEANGQASSETISKQHR 239 Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292 + + ++ +I L +G N + V A L+ D++Q E DP+ + S+ Sbjct: 240 AEEEYEDRLQKSIVSLLEPIVGKGNVTAVVKANLDFDSKQQTETTIDPNKVIV-----SQ 294 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 + + + + V+ + + + ++ S N+ K+E+++NY+ T Sbjct: 295 ETLKEINNNGDGTVS-QSPVDNNMSNEIVNNNSSSNSSKEEQKTNYDSGKSESKTIQAQG 353 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 K++RL+ V +NK E V+ A GI++ RGD IT++ M Sbjct: 354 KVDRLTATVYLNK-------------TLTQEERQEFEDGVANAIGIDATRGDQITVSGMT 400 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F + + + + + T++ ++G +L+ + ++R + ++ Sbjct: 401 FDTSSIDKAQATLEEMNAEEAANKKTMMMIAGGVIGAILIGAIIFFIIKRRKKKQEEEEQ 460 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 + + + ++P + D + + +L++ I Y +++ Sbjct: 461 LLD-----------TLIDDTIIPKEPDTFDPIEFETKTQKSHLENEIKKYATEK------ 503 Query: 533 HMIEINEERFAKILRKWARSEI 554 E+ +I++ W Sbjct: 504 ------PEQVVEIIKSWLTENE 519 >gi|212639567|ref|YP_002316087.1| flagellar MS-ring protein [Anoxybacillus flavithermus WK1] gi|212561047|gb|ACJ34102.1| Flagellar basal body M-ring protein FliF [Anoxybacillus flavithermus WK1] Length = 529 Score = 305 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 118/572 (20%), Positives = 229/572 (40%), Gaps = 73/572 (12%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 +++L F+ T + L L +++V + L FF ++ LY L + +I Sbjct: 9 IERLKLFWSERTKQQKMMALGLIGLLVVSVAL---TAFFATRTNFVPLYSNLSPQEAGQI 65 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L + I +I+DNG++I VP +V ++ LAA+G+P S S Y F K + FG+T Sbjct: 66 KATLDQRGIKSQITDNGTTILVPEQLVNTLKVELAAEGIPDSGS-IDYSFFGKNSGFGMT 124 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA-RPTASVMIRAINP 182 + ++ A++ E+A I+SI G+ A+V I +P F +AS++++ Sbjct: 125 DNEFNVLKIEAMQTELANLIKSIDGVEDAKVMINLPQPTIFVGDQQEEASASIVLKTKAG 184 Query: 183 S--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK----SLSIVQA 236 + +++ HLV+ +VPNL ++ +++ + E GK + Q Sbjct: 185 YKFNEQQIKSLYHLVSKSVPNLPTDNIVIMNQYFEYFDLKNEENFSSGKTFAEQYEVKQQ 244 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD-----SKVERSIRLS 291 I+ +I+ + + L +G D +V A+++ + +E + +P + S++ Sbjct: 245 IERDIQRRVQQMLGTMIGQDKVVVSVTADVDFTQENRQEELVEPVDKENMEGIAVSVQRI 304 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + + +QP V N V + + + ++ EE N E+N Sbjct: 305 TETFSGQGAQPGGTTGVGGNA--VPGYQGANGGTNGDYERIEETINNEVNRIKKEIVASP 362 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT-----G--INSRRGD 404 YK++ L I V+V + + A +D + IV + G ++ + Sbjct: 363 YKVKDLGIQVMVEPPKANDPNSLPAQT--VDDITKILGTIVRTSVDKDIAGQWTDTDLQN 420 Query: 405 TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 + ++ F FN T + ++ A + + + FL L Sbjct: 421 RVVVSVQPFNGKVQFNEQTSTIPTWAYIAGGGAIALLLAL-------LVFLWLR------ 467 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 KK ++ + +L P++ + +N V Sbjct: 468 ---KRKKEQLDDELLLQEEPVAVQIPD---------------------------VNEEVE 497 Query: 525 KQSDLR---LLHMIEINEERFAKILRKWARSE 553 +S LR L + + E FAK+LR W E Sbjct: 498 TESTLRRKQLEKLAKEKPEEFAKLLRTWLAEE 529 >gi|325288778|ref|YP_004264959.1| flagellar M-ring protein FliF [Syntrophobotulus glycolicus DSM 8271] gi|324964179|gb|ADY54958.1| flagellar M-ring protein FliF [Syntrophobotulus glycolicus DSM 8271] Length = 534 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 116/556 (20%), Positives = 225/556 (40%), Gaps = 35/556 (6%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 I+ + F++ + R ++ V+L + + + + ++P Y L+ KL ++ Sbjct: 8 IIKSVRGFWEKLSKPQRVILIAAPLVVLTALTILIV---WASTPSYAVLFSKLSSTEAGA 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I+ L + N +++ ++G++I VP S + + R+ LA GLP S+ S L G Sbjct: 65 ITTKLKDLNYSYKLEESGATIQVPESQLAQIRLDLANAGLPQKSTFSFENL--NEVHLGE 122 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T +++ V L+ E+ TIQ++ GI ARVHIV+P+ F + TA+V ++ Sbjct: 123 TDKDRQLRYVLGLQNELETTIQTMDGIEYARVHIVIPEQSLFTEKQTESTAAVTVKKNPG 182 Query: 183 --SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAI 237 AI +L+ +V L + VT++D+ G +L+ + + L + Q++ Sbjct: 183 TELSADQVRAIANLLVYSVEGLQIEKVTIVDTNGNVLSDELGKDKTNRMSVTDLQLQQSV 242 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 ++ I+ ++ L G A LN D Q+I + D +E S+ Sbjct: 243 ENNIQKSVQTMLDKAFGAGKTIVRTNAALNFDQQKITSQTHT-DGAIESRQETSERVSDG 301 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 +T+ E N+P + ++ ++K NY+ N T +++RL Sbjct: 302 QTT--GGVPGTETNIPTYPADEQTDQGTI--SEKYTSTENYQPNVVQEETVVSPGQIKRL 357 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 +I+V+ + +T L+ I IV++A G++ RGD I + + F + Sbjct: 358 TISVMADTDSIT------------AQQLSNIEAIVASAAGVDQNRGDVIQVAGLPFDKTT 405 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 I V + + V L RR + ++ Sbjct: 406 TLQEQAEAEIAERNAKILQYAEIGVAVLAILLVAVILLRNRRARRRMSGEEQVLATAEDM 465 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 ++L+ + L L + + + S + +I V K S+ Sbjct: 466 TLLTVEEAERMLADQLDAERQAELRIAKKKVKSPDEIEREKIRKEVEKYSN--------E 517 Query: 538 NEERFAKILRKWARSE 553 N A+++R W E Sbjct: 518 NPSEVARLVRTWLAEE 533 >gi|265985824|ref|ZP_06098559.1| flagellar M-ring protein FliF [Brucella sp. 83/13] gi|264664416|gb|EEZ34677.1| flagellar M-ring protein FliF [Brucella sp. 83/13] Length = 324 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 143/315 (45%), Positives = 204/315 (64%), Gaps = 3/315 (0%) Query: 4 LDQLLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 QL++ K LG +++ L V + + ++ P Y+ LYV L DVN Sbjct: 10 FQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGCPSYETLYVGLSRDDVNC 69 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S GL Sbjct: 70 MGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGL 128 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 TSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 129 TSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGG 188 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEI 241 +SA++IR LVAAAVP+LD VTVLD+ G LL +A E + S+ Q + + Sbjct: 189 FSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVAGHV 248 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S VERS+R+ +++ S ++ Sbjct: 249 DDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESCVERSVRVVRESGDSRNNR 308 Query: 302 PESAVTVEQNMPHVS 316 ++A VEQN+P Sbjct: 309 NDNATGVEQNIPQEQ 323 >gi|284041509|ref|YP_003391849.1| flagellar M-ring protein FliF [Conexibacter woesei DSM 14684] gi|283945730|gb|ADB48474.1| flagellar M-ring protein FliF [Conexibacter woesei DSM 14684] Length = 505 Score = 304 bits (778), Expect = 3e-80, Method: Composition-based stats. Identities = 124/545 (22%), Positives = 215/545 (39%), Gaps = 51/545 (9%) Query: 14 GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73 +L ++LA L +++ +P Y L ++ D ++ AL E I Sbjct: 7 LANLSTRGKIVLAGGALAIVVVLFFLFQIATAPSYTTLLTGMDPKDTGEVTAALDERGIA 66 Query: 74 FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 + + +NG++++V +ARI LA GLP ++N GY++ D G ++F Q + R Sbjct: 67 YELQNNGTALAVQKGQTAQARIALAGAGLP-GNTNDGYKILD-DQKMGTSNFQQNVNYQR 124 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDM--GSFRKIGARPTASVMIRAINPSVYKSAEAI 191 ALEGEI TI+ + G+ +A+V +V+PD F + TA+V++ + I Sbjct: 125 ALEGEIGTTIEEVDGVSSAQVQLVLPDREAQLFAENVNPATAAVLLSGASTLDEGQVRGI 184 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLL--TANEMERNILGKSLSIVQAIQHEIEMNINKAL 249 LV +VP L VT+ DS+G +L TA + L + + NI L Sbjct: 185 AQLVTNSVPGLKSEKVTITDSSGTMLWPTATSGSSSGLLAKQAAEARYNQQTATNITAML 244 Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309 A +G D + V A+L+ + +VY D S R ++ S + Sbjct: 245 ARTVGPDKVQVQVKADLDANEATQDRLVYGRDGTPL-SNRAERETLVSRGGRAGGPAGTA 303 Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369 N P V + + ++ E N +N T + R +AV+V+ Sbjct: 304 GNNPPVYAGQAGGD---SDYRRESEDENLAVNKTVTRTRIAPGAVNRQQVAVLVDDSV-- 358 Query: 370 EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFM 429 + L +I V +A GI+ RGD +T+ S+ F E + + Sbjct: 359 -----------PAAMLPQIRDAVMSAAGIDEDRGDVLTLGSIPFAELPRPAASSPVDDIW 407 Query: 430 DILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE-VGGKSILSPPPISSA 488 D +R+ + ALVFL L LR+ N A + + Sbjct: 408 DY-ARYALLGMAALVFLA-------LVARQLRKRENETLAGEPTWLREIESPRTLAELER 459 Query: 489 VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRK 548 + P + L S + +++ ++E + ER A+ +R Sbjct: 460 FEEPVAPTQVLPLRSPENA-------------------ARMQVEELVERDPERVAQHVRA 500 Query: 549 WARSE 553 W + + Sbjct: 501 WMQED 505 >gi|332187937|ref|ZP_08389670.1| flagellar M-ring protein FliF [Sphingomonas sp. S17] gi|332012098|gb|EGI54170.1| flagellar M-ring protein FliF [Sphingomonas sp. S17] Length = 580 Score = 303 bits (776), Expect = 5e-80, Method: Composition-based stats. Identities = 113/537 (21%), Positives = 217/537 (40%), Gaps = 43/537 (8%) Query: 44 NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP 103 +SP L+ L +D ++ ALS ANI +I+D +++V KAR+ LA QGLP Sbjct: 63 SSPPQKTLFENLSDADKQAVTTALSAANIKSKINDGTGALTVNEEDYSKARMLLAGQGLP 122 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 + GY + D++ G++ ++ +A E E+AR+I+ I + ARVH+ MP+ Sbjct: 123 KQAP-GGYAILDQL-PMGVSRAVEGERLRQARESELARSIEEIDAVAEARVHLAMPEASV 180 Query: 164 FRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-AN 220 F + A P+ASV+++ ++I +LVA++VP + DVTV+D G LL+ Sbjct: 181 FVRDKASPSASVVLKLNAGRALSEAQVQSIINLVASSVPGMKPEDVTVVDQMGGLLSKKG 240 Query: 221 EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP 280 + + + + ++ + + + L +G NF + V A++N+D YD Sbjct: 241 ADGASGDDRRIDFQRRLEEKYRTQLIQLLTPLVGAGNFTAEVQADVNLDETSATSERYDK 300 Query: 281 DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSD--------------------RKV 320 D R+ + + + + P N P + Sbjct: 301 DG-ALRAETGNWTGNQKDPTPPGGIPGALSNTPPPASTLQQPQAANGANGAPPADGKPVA 359 Query: 321 PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380 P Q Y++N + T ++RL++AV++ A + Sbjct: 360 GGPGLNPEKQSDAFQRAYDLNKQVSVTRAAPGSIKRLTVAVLLRD---------PATGKR 410 Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS-GTVQVSFMDILSRHFATV 439 + +I+ +V +A G + +R D +T+ S F + + + S++ I++R+ + Sbjct: 411 SQMEITQISDLVKSAVGFDQQRNDNVTVISRKFADAGVEDKRAWYDNSWLPIVARNATAL 470 Query: 440 INALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNI 499 + AL+ L+ + L + + + + ++A G D Sbjct: 471 VIALLVLLLG-------VRPLVKAMTKKKDEAEAAKALPMGAADGTATAAQGGAPRVDAD 523 Query: 500 ALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIED 556 Q + L + +++ N R A +R RSE + Sbjct: 524 GQPLPEQIAIQPAVTLDEIEETNNFDDRIVKVRGFTRDNPARAALAIRDMIRSEAQS 580 >gi|327478787|gb|AEA82097.1| flagellar MS-ring protein [Pseudomonas stutzeri DSM 4166] Length = 558 Score = 303 bits (776), Expect = 5e-80, Method: Composition-based stats. Identities = 132/569 (23%), Positives = 234/569 (41%), Gaps = 31/569 (5%) Query: 3 ILDQLLQFF-KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 +L +L + G L L +VI + + +A + ++ + L+ E Sbjct: 1 MLQKLKSRLPEGGLQLDPRVTLAGMAVIAAALAVAVAFYLWRDNGSFRPLHGAGESFPAA 60 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 + L + +RI I V + +AR+ L A+G+ + +GYELFDK G Sbjct: 61 EVMQVLDGEALQYRIHPQSGQILVREDQLARARLLLNAKGV-KVAQPAGYELFDKEEPLG 119 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPT-ASVMIRAI 180 + F+Q++ R+LEGE+ART+ ++ G+ ARVH+ + SF P+ ASVM++ Sbjct: 120 TSQFVQDVRLKRSLEGELARTVMALKGVQQARVHLAQEENSSFVVSKRAPSKASVMLQLE 179 Query: 181 NP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQ 238 AI +LVA +VPNL DV V+D G LL+ ++ V+ Q Sbjct: 180 PGYKLSSDQVGAIVNLVANSVPNLKPEDVGVVDQYGALLSRGLNVGGGPAQNWQAVEDYQ 239 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 + NI + LA LG+ NFR +V A+++ ++ Y D+ R+ L ++ Sbjct: 240 QKAAANIEQVLAPVLGLGNFRISVAADIDFSQKEETFQSYG-DTPRLRNEVLRNESALDR 298 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLEN----TDKKEEQSNYEINTKSIATTHDNYKL 354 + + MP + + + EN + ++E + + + H + L Sbjct: 299 LALGVPGSLSNRPMPPAPEGEEAQQPATENKGATSLREESTRQMDYDQSVVHVRHAGFAL 358 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 + S+AVV+N E G D AE+ +V +A G RGD ++++ + F Sbjct: 359 RQQSVAVVLNSAAAPE-------GGWTDEARAELEAMVRSAVGFKQERGDLLSLSVLPFA 411 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 + V + + A V + L+ LL+ + A+R L + A + Sbjct: 412 --AVEPIEQVVPWWENSQVHALAKV--GVAGLIALLLLLIVVRPAVRNLTQRNVAALPQR 467 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 G P + A G + AL S + H + ++ L Sbjct: 468 EGLEGSLVEPSAPAALEG---DSRPALASPREPGGPHIFGELNPLSEIRLPAPGSGLELQ 524 Query: 535 IE-------INEERFAKILRKWARSEIED 556 IE + ER +++++ W D Sbjct: 525 IEHLQMLAKNDPERVSEVIKHWIGRNERD 553 >gi|288550127|ref|ZP_05969368.2| flagellar M-ring protein FliF [Enterobacter cancerogenus ATCC 35316] gi|288316307|gb|EFC55245.1| flagellar M-ring protein FliF [Enterobacter cancerogenus ATCC 35316] Length = 533 Score = 303 bits (776), Expect = 6e-80, Method: Composition-based stats. Identities = 122/556 (21%), Positives = 225/556 (40%), Gaps = 42/556 (7%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 + V+LV ++F + ++ Y LY E V ++ L +I +RI+ + Sbjct: 1 MAAGGVLLVAAIVF---SLWRSNQGYVALYGSDEKLPVAQVVEVLGAESIAYRINPDNGQ 57 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP + +AR+ LAA+G+ ++ GYEL DK G + F+Q + R+LEGE+AR+ Sbjct: 58 ILVPEDKLPRARMALAAKGI-TAVMPDGYELMDKDEMLGSSQFVQNVRYKRSLEGELARS 116 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAINP--SVYKSAEAIRHLVAAAV 199 I ++ + ARVH+ + + SF +ASVM++ + AI LVA +V Sbjct: 117 IMALDPVENARVHLGLSESSSFVMTNKPQSSASVMLQLRYGKHLDEQQVAAIVQLVAGSV 176 Query: 200 PNLDMGDVTVLDSTGKLLTANEMERNILGKSL----SIVQAIQHEIEMNINKALAAFLGV 255 P + G V V+D G LL+ N + S+ +++ I++E NI L+ G Sbjct: 177 PGMQPGSVRVVDQAGNLLSENGQQGGTSMASIRQGRDVIERIKNETTNNIAALLSPLFGN 236 Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS-ETSQPESAVTVEQNM-- 312 +NFR +V ++M + + + + +V ++ P S N Sbjct: 237 ENFRISVTPTVDMSSVEETQERLGKEPQVSDENISHENTTNELAMGIPGSLSNRPVNQPA 296 Query: 313 ---------PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 + + + + +EQ Y + H YKLE+L +AV + Sbjct: 297 PATPPMAANAQTAQTETQNRTPSSLSSRSQEQRKYAFDRDIRHIRHPGYKLEKLRVAVAL 356 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 N+ L + ++V A GI RGD++T+ + F++ + Sbjct: 357 NQAAKPLAS-------MTPEQLTALTRLVEDAAGIEKDRGDSLTLDRLAFIDR-TPDGFP 408 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 + D +++ N + ++ L + F +R + + + G + Sbjct: 409 EPKWWQDPNIQYWGQ--NGGIGMLILLALLFGLRPLAQRYGRREPVELAAIEGSAQNEAI 466 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 M L F+ L + + +K L++ + E ER A Sbjct: 467 END-------MVTTESGLTGLPGPAFNQDTELPPQSSGLETKVEYLQM--LAENETERMA 517 Query: 544 KILRKWARSEIEDRYT 559 ++L++W S T Sbjct: 518 EVLKQWINSNERTDNT 533 >gi|148554208|ref|YP_001261790.1| flagellar M-ring protein FliF [Sphingomonas wittichii RW1] gi|148499398|gb|ABQ67652.1| flagellar M-ring protein FliF [Sphingomonas wittichii RW1] Length = 578 Score = 302 bits (774), Expect = 8e-80, Method: Composition-based stats. Identities = 111/530 (20%), Positives = 216/530 (40%), Gaps = 37/530 (6%) Query: 43 VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL 102 ++ +L+ + +D ++ AL ANI ++I +++VP + +A++ LA QGL Sbjct: 64 MSGAPQRDLFAGMGDADKAAVAEALKTANIPYQIDRGTGALTVPETSFYQAKMLLAQQGL 123 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162 P S+ + + G + ++ A E ++ARTI++I + +A+VH+ Sbjct: 124 PKSAPDG--DALISSLPLGASRAVEGEKLRTAREMDLARTIEAIDAVESAKVHVAAEQPS 181 Query: 163 SFRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN 220 F + A+P ASVM+R +AI HLVA++VPNL V+++D G+LL+A+ Sbjct: 182 VFLRDEAKPQASVMLRLRAGRALADSQVQAIVHLVASSVPNLTPDGVSIVDQAGRLLSAS 241 Query: 221 EME--RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 + + + I I+ + K L +G NF + V A+++ Q Y Sbjct: 242 GGDPMSQASTRQVDIQNKIEQRYLDALTKILTPIVGPGNFTAEVHADVDFTETQATRESY 301 Query: 279 DPDSKVERSIRLS----------KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 D+ V R + S + ++QP +A V N Sbjct: 302 PKDTAVVRQEQGSWTGDKKDGEATGIPGALSNQPPAASQVAAAPNQTVAAPTAGTTDAAN 361 Query: 329 TDKKEEQSN--YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLA 386 K E N YE+ + T ++RLS+AV + +G + LA Sbjct: 362 AGKTSENYNRTYELGREVSVTRAPIGTVKRLSVAVALREGSRK----------FSRAELA 411 Query: 387 EINKIVSAATGINSRRGDTITITSMDF--LENQLFNSGTVQVSFMDILSRHFATVINALV 444 I +V A G + RGD + +++ F E+ ++ L+R+ + ++ + Sbjct: 412 SIETLVRGAIGADQARGDVVALSARSFAVAEDAEVKPNWWDAPWVSTLARNLSALLVVAL 471 Query: 445 FLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSS 504 + G RR I++ K + P + + +A + Sbjct: 472 LVFGVAKPLL-----KRRAAYIEEKKAALDAMAASGGRLPQGTNPSIRAEIASEMAQQAL 526 Query: 505 NQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + ++ Y ++ +R + + + +R A ++R R+++ Sbjct: 527 IDPNKPVTLDMIEATPGYANRAELIR--NFVRQDPDRAALVVRDLIRADM 574 >gi|221639466|ref|YP_002525728.1| Flagellar M-ring protein [Rhodobacter sphaeroides KD131] gi|221160247|gb|ACM01227.1| Flagellar M-ring protein [Rhodobacter sphaeroides KD131] Length = 561 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 121/572 (21%), Positives = 226/572 (39%), Gaps = 43/572 (7%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 +LDQ+ +F R + A +IL +L +A + P LY L ++ Sbjct: 14 GMLDQIRRF----GDQPGLRRAMPAILILAVTVLALAGWILLREPARVTLYPGLPEAEKA 69 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 R+ +L+ I I + ++VP + +AR+ LAAQGLP + L D G Sbjct: 70 RVIDSLTGGGIAAVIDERTGEVAVPGADYHRARMLLAAQGLPQGLPDGNALLSDL--PMG 127 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 + ++ +A E ++AR+I IS + AARVH+ +P+ +F + P ASV ++ + Sbjct: 128 TSKSVETARLRQAQELDLARSITEISAVSAARVHLALPERSAFLRESQPPRASVFLQIVP 187 Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAI 237 EAI +LV+++VP + DVTV+D G+LL+ + + + L + Sbjct: 188 GRTLDGAQVEAIVNLVSSSVPGMARQDVTVVDQMGRLLSRGSDDPAVLLNDRQLQHRVQL 247 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + I L G N V +++ Q+IRE DPD + + + + Sbjct: 248 ETLYRNRIESLLTPIAGPGNLAVQVTIDMDFTRQEIREEQVDPDRTALLAEQSQIEE--T 305 Query: 298 ETSQPESAVTVEQNMP--------HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 Q N P + + + N+E++ K T Sbjct: 306 ADPQARGIPGAVSNSPPPEAALEAGAPPTAAGEAAAPMRSRSQNSTRNFEVSRKVETTLP 365 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL--AEINKIVSAATGINSRRGDTIT 407 ++ R+S AVVV +A + A++ ++ +A G ++ RGD +T Sbjct: 366 ATARIARVSAAVVVRAQPQPAATDPAAPPPPLLPEALKADLERLTRSAVGFDADRGDVVT 425 Query: 408 ITSMDFLENQLFNS-GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 IT+ FL+ + + G ++ L+R + V L +R + N Sbjct: 426 ITAQPFLDTVVPEASGWSAEPWLADLARQGFLLAALAVV----------ALGVVRPILNR 475 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI--NSYVS 524 + T + + +LD + + L + + Sbjct: 476 --------VLLPAPAAAGALPLGETAVEVGEGESLDDVRARLKARQGALTKNMLDAARSH 527 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIED 556 ++ L + ++E +E R A +R+ +E++ Sbjct: 528 EEQILVIRKLVEEDEGRIATTIRQMIAAELDT 559 >gi|323341386|ref|ZP_08081630.1| putative flagellar M-ring protein fliF [Lactobacillus ruminis ATCC 25644] gi|323091263|gb|EFZ33891.1| putative flagellar M-ring protein fliF [Lactobacillus ruminis ATCC 25644] Length = 537 Score = 300 bits (769), Expect = 3e-79, Method: Composition-based stats. Identities = 114/561 (20%), Positives = 218/561 (38%), Gaps = 43/561 (7%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + D L + L R + + ++ + + Y L+ L +D Sbjct: 3 KVKDALEALKAKWSELSRLVKIAIVLGVISLFAIIGTVYYMNTRVEYSVLFSNLSEADAG 62 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG-LPSSSSNSGYELFDKVNSF 120 IS L NI ++++D+G +I V + V + RI LA LPSSS G+ELFD S Sbjct: 63 TISQDLDSQNIKYKLADDGKTIMVDKTKVDQYRIDLAVDNKLPSSSK--GFELFDSA-SM 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD-MGSF-RKIGARPTASVMIR 178 T ++I RAL GE+ +I ++ + A+V++ +P F + AS+++ Sbjct: 120 MTTDEDRKIMYQRALTGELENSIAALDDVDKAKVNLTIPKSDNVFDNSTSKKAKASIVLT 179 Query: 179 AINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-----ERNILGKSLS 232 S+ K + I L AV LD +V V+D TGK+L NE + K + Sbjct: 180 LKGTSISKDAVQGIVALTTGAVQGLDKKNVKVVDQTGKILNKNEEDDASDSSSATSKYMK 239 Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292 + + ++E I + +G +++V +LN D + + Y + RS + Sbjct: 240 LKSQYEKQMEKKITGLIEPVVGKGKVKASVNVDLNFDAVEKKITNYS--NPQIRSENVQA 297 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 +++E Q ++ V N+ +V+ S N E+NT++ + Sbjct: 298 SGKQAEIKQAQTG-QVNDNVDNVTGDANNDNASYN------RTVNNELNTETTKVINAPG 350 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 + R++ +VV+N I K++ A G + +RGDT+++ +++ Sbjct: 351 SINRMTSSVVINGD-------------LSAGDARNIRKLIQGALGYDKQRGDTVSVQAVN 397 Query: 413 FLENQLFNSGTV-QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 F + TV + +I A V +GT + FL + RRL ++ Sbjct: 398 FARAKSTKKKTVAKKPVKKTNWVLIGALIAAGVLTLGT--IIFLVIRRRRRLAEEEEEYY 455 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 + + D + ++ ++ ++ R Sbjct: 456 DDDYDVDVTDEGEEEEEAEEAAEELD------PEILAEQERQRKETETKRKIAVSTEQRA 509 Query: 532 LHMIEINEERFAKILRKWARS 552 + + A ++ W + Sbjct: 510 KEYATKHPDVVADLISAWVKE 530 >gi|11095419|gb|AAG29859.1|AF313764_2 flagellar M-Ring protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 619 Score = 300 bits (768), Expect = 4e-79, Method: Composition-based stats. Identities = 118/609 (19%), Positives = 228/609 (37%), Gaps = 81/609 (13%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++++ + K + + ++ + F +++P +LY D I Sbjct: 34 VNKVYERVKDFVQQPAIKRSLPLMGLISLTAIGALIWFLLSAPTQRDLYPGARDGDRASI 93 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + AL I + I I+V KAR LA QGLP S+ + + G + Sbjct: 94 ARALETGGIHYNIKRGNGVITVSEKEFYKARDLLAQQGLPKSAPDGVH--VISSLPLGAS 151 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 ++ A E +ARTI++I + ARVHI P F + TASVM++ + Sbjct: 152 RAVEAKRLRAAREVVLARTIETIDVVNQARVHIAEPQPSPFVREQVHGTASVMLKLMTGR 211 Query: 184 VYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQAIQHE 240 +AI++LVAA+VP + V+V+D G LL+A + + +I + L + Q ++ Sbjct: 212 NLSNAQVQAIQNLVAASVPGMAPEAVSVVDQAGHLLSATSNADNDINDRQLRLQQTVEAR 271 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 +NK L LG +N+ + V +L+ Q Y P RS S + Sbjct: 272 YMDALNKLLVPLLGENNYTAEVHTDLDFTESQATRESY-PKEGSLRSESGSWNKDGGPD- 329 Query: 301 QPESAVTVEQNMPHVSDRKV---------------------------------------- 320 Q NMP Sbjct: 330 QNGGIPGAMSNMPPTPANPTQNPPPNLQPPAQPNNQQNAQNGQQGQNAQGQPNGQNAQQG 389 Query: 321 ---------PLPRSLENTDKKEEQSN--YEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369 P + + + E N YE+ + + ++R+S+A+ + + Sbjct: 390 QNARAPGSVPAETAQQAQARTSENFNRYYELGREVSVIRNPTGSVKRVSVAIALRQINHG 449 Query: 370 EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFM 429 + +A++ K++ A G ++ RGD + I+S DF+ +F+ Q S++ Sbjct: 450 --------KPPSPEQVAQLEKLIKGAIGFDASRGDVVAISSSDFMGGSVFSMPWYQNSWV 501 Query: 430 DILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAV 489 +L+R+ + LV L++ L+ + ++ L I + + Sbjct: 502 PLLARNLS------ALLVAALVIFGFARPFLKARAEAAERRRLAENPLPQLEQTNIDNLI 555 Query: 490 TTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549 G P + + D+ + ++R++ + H ++ + R A ++ Sbjct: 556 AEGEEPAEEAGSQAITLDMIDAAPGYKARVDL---------VRHFVKQDPARAALVVHDM 606 Query: 550 ARSEIEDRY 558 RS+++ Sbjct: 607 MRSDLKSLE 615 >gi|152965616|ref|YP_001361400.1| flagellar M-ring protein FliF [Kineococcus radiotolerans SRS30216] gi|151360133|gb|ABS03136.1| flagellar M-ring protein FliF [Kineococcus radiotolerans SRS30216] Length = 537 Score = 300 bits (768), Expect = 4e-79, Method: Composition-based stats. Identities = 113/559 (20%), Positives = 220/559 (39%), Gaps = 41/559 (7%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 AI++ F + + ++ +V++ + + + ++P Y ++ L +D N Sbjct: 9 AIVENAKNFVSGFRTFSTGQKAVVIAVVVALLGGAVLFSRWASTPSYTPMFSNLSGADAN 68 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 + L + ++++DNG++I VP+ +V R+ ++ GLP + + SGY L Sbjct: 69 AMVEKLDADGVPYQLADNGATILVPADVVDSERLAMSGAGLP-ADTGSGYTLL-TEQKVT 126 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 + FMQ+ T + L+GE+ TI+SI G+ +A V++ +P F TASV+++ Sbjct: 127 TSEFMQQKTYQKVLQGELESTIESIDGVESAVVNLAIPQKDVFLDEQDPTTASVLVKLRP 186 Query: 182 PSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQH 239 +I +LV+ V +D +V+V+D G L+ + + Sbjct: 187 GKELSNDQVTSIVNLVSGGVEGMDPANVSVVDDKGNTLSTDGSGSSA---QQEKTSDYNA 243 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY-DPDSKVERSIRLSKDAQRSE 298 ++ L + G N ++ V A LN D + Y P + +++ Sbjct: 244 SASADLQTFLESVYGKGNVKATVKATLNYDDKTESSTTYSQPQEIDPLAEAKTEETYEGT 303 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 T + V N+ + KK E +N IN T KLE+ + Sbjct: 304 TGAAATGVLGPDNI----AVPGGDAENGGGYAKKSETNNNAINKIDTVTKQAPGKLEKQT 359 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 ++VVVN G + + +I +IV+ A GI++ RGD++++ + Sbjct: 360 VSVVVNAGAKGAA---------GAADVNQITQIVNQAAGIDATRGDSVSVVKT--AFDDT 408 Query: 419 FNSGTVQVSFMDILSRHFATVIN-----ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 + + T+I AL LV +LV L R++ +D Sbjct: 409 AAAEAAAALAAADEADQQTTLIGYAKTAALGLLVLIMLVVILVAFRRRKVETVD------ 462 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 +L P+ TGL ++ + + + + ++ Sbjct: 463 -----VLDVEPLQLGDITGL--DEELKEIAPVVERPVALEAAPVDPALEAAAARRTEVVE 515 Query: 534 MIEINEERFAKILRKWARS 552 ++ E A++LR W Sbjct: 516 LVSRQPEEVAELLRGWLAD 534 >gi|261216584|ref|ZP_05930865.1| flagellar M-ring protein FliF [Brucella ceti M13/05/1] gi|261319454|ref|ZP_05958651.1| flagellar M-ring protein FliF [Brucella ceti M644/93/1] gi|260921673|gb|EEX88241.1| flagellar M-ring protein FliF [Brucella ceti M13/05/1] gi|261292144|gb|EEX95640.1| flagellar M-ring protein FliF [Brucella ceti M644/93/1] Length = 332 Score = 300 bits (768), Expect = 4e-79, Method: Composition-based stats. Identities = 149/336 (44%), Positives = 217/336 (64%), Gaps = 5/336 (1%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +++QL + LG +++ L V + + ++ P Y+ LYV L DVNR Sbjct: 1 MIEQLKG---TLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVNR 57 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S GL Sbjct: 58 MGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGL 116 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 TSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 117 TSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGG 176 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEI 241 +SA++IR LV AAVP+LD VTVLD+ G LL +A E + S+ Q + + Sbjct: 177 FSAESAQSIRQLVTAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASHV 236 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S ++ Sbjct: 237 DDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNNR 296 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSN 337 ++A VEQN+P + S E TD++EE +N Sbjct: 297 NDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTN 332 >gi|52080223|ref|YP_079014.1| flagellar MS-ring protein [Bacillus licheniformis ATCC 14580] gi|52785600|ref|YP_091429.1| flagellar MS-ring protein [Bacillus licheniformis ATCC 14580] gi|319645998|ref|ZP_08000228.1| FliF protein [Bacillus sp. BT1B_CT2] gi|52003434|gb|AAU23376.1| flagellar basal-body M-ring protein [Bacillus licheniformis ATCC 14580] gi|52348102|gb|AAU40736.1| FliF [Bacillus licheniformis ATCC 14580] gi|317391748|gb|EFV72545.1| FliF protein [Bacillus sp. BT1B_CT2] Length = 533 Score = 300 bits (768), Expect = 4e-79, Method: Composition-based stats. Identities = 105/573 (18%), Positives = 208/573 (36%), Gaps = 65/573 (11%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 + I ++ F+K+ + L + ++L ++ + ++L + +S LY L + Sbjct: 6 LQIKTKITDFWKNRSKLQK---ILLIGIVALAVILSIIIGIVASSNKMVPLYKDLSAEET 62 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +I L E I ++ +GS I VP V + ++ LAA+GLP S S Y F + F Sbjct: 63 GQIKQVLDEKGIPSEVATDGSVIKVPEEKVDELKVDLAAEGLPKSGS-IDYSFFGENAGF 121 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRA 179 G+T ++ +V+A + E++ I+ I GI ++V I +P F +AS++++ Sbjct: 122 GMTDNEFDVLKVKATQTELSNLIKGIDGIKDSKVMINLPKESVFVGEEKPEASASIVLQV 181 Query: 180 INPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ-- 235 + HLV+ +VPNLD ++ ++D E S S + Sbjct: 182 KPGHTLDQNEINGLYHLVSKSVPNLDPKNIVIMDQNSTYYDQTGKESGSYADSYSSQREV 241 Query: 236 --AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD-----SKVERSI 288 I+ +++ I L +G D +V ++++ + E + +P + S Sbjct: 242 KAQIEKDLQRQIQTMLGTMMGQDKVVVSVTSDIDFTKENRTEDLVEPVDKENMEGITVSA 301 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 + + +Q +N + + + +K EE+ N E+N Sbjct: 302 ERVSETYSGQGAQAGGVNGTGEND-VTNYAETEGGTGNGDYEKSEERINNEVNRIHKEIA 360 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG--------INS 400 YK+ L + V+V A+ + D ++ IV + + Sbjct: 361 ESPYKIRDLGVQVMVEPPDANNPQSLPAE--REDDIKKILSTIVKTSIDKNYEEEPLTDE 418 Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460 + I ++ F Q + GT +A + + L+ +L Sbjct: 419 DVENKIVVSVQSFDGKQTIDEGTETGGIP-----MWAYIAGGAALVAVIGLIIWLVRRRK 473 Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520 R ++ P + I + N + + Sbjct: 474 NRDDEYEEEWY---------------------ETPQEPIRVADVNNEKETEE-------- 504 Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 +L M + E FAK+LR W + Sbjct: 505 ----TVRRKQLEKMAKDKPEEFAKLLRSWLTED 533 >gi|77463624|ref|YP_353128.1| flagellar FliF M-ring protein [Rhodobacter sphaeroides 2.4.1] gi|77388042|gb|ABA79227.1| Flagellar FliF M-ring protein [Rhodobacter sphaeroides 2.4.1] Length = 570 Score = 300 bits (767), Expect = 5e-79, Method: Composition-based stats. Identities = 119/572 (20%), Positives = 227/572 (39%), Gaps = 43/572 (7%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 +++Q+ +F R + A +IL +L +A + P LY L ++ Sbjct: 23 GMVEQIRRF----GDQPGLRRAMPAILILAVTVLALAGWILLREPARVTLYPGLPEAEKA 78 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 R+ +L+ I I + ++VP + +AR+ LAAQGLP + L D G Sbjct: 79 RVIDSLTGGGIAAVIDERTGEVAVPGADYHRARMLLAAQGLPQGLPDGNALLSDL--PMG 136 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 + ++ +A E ++AR+I IS + AARVH+ +P+ +F + P ASV ++ + Sbjct: 137 TSKSVETARLRQAQELDLARSITEISAVSAARVHLALPERSAFLRESQPPRASVFLQIVP 196 Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAI 237 EAI +LV+++VP + DVTV+D G+LL+ + + + L + Sbjct: 197 GRTLDGAQVEAIVNLVSSSVPGMARQDVTVVDQMGRLLSRGSDDPAVLLNDRQLQHRVQL 256 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + I L G N V +++ Q+IRE DPD + + + + Sbjct: 257 ETLYRNRIESLLTPIAGPGNLAVQVTIDMDFTRQEIREEQVDPDRTALLAEQSQIEE--T 314 Query: 298 ETSQPESAVTVEQNMP--------HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 Q N P + + + N+E++ K T Sbjct: 315 ADPQARGIPGAVSNSPPPEAALEAGAPPTAAGEAATPMRSRSQNSTRNFEVSRKVETTLP 374 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL--AEINKIVSAATGINSRRGDTIT 407 ++ R+S AVVV +A + A++ ++ +A G ++ RGD +T Sbjct: 375 ATARIARVSAAVVVRAQPQPAATDPAAPPPPLLPEALKADLERLTRSAVGFDADRGDVVT 434 Query: 408 ITSMDFLENQLFNS-GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 IT+ FL+ + + G ++ L+R + V + L +R + N Sbjct: 435 ITAQPFLDTVVPEASGWSAEPWLADLARQGFLLAALAV----------VALGVVRPILNR 484 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI--NSYVS 524 + T + + +LD + + L + + Sbjct: 485 --------VLLPAPAAAGALPLGETAVEVGEGESLDDVRARLKARQGALTKNMLDAARSH 536 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIED 556 ++ L + ++E +E R A +R+ +E++ Sbjct: 537 EEQILVIRKLVEEDEGRIATTIRQMIAAELDT 568 >gi|254487125|ref|ZP_05100330.1| flagellar M-ring protein FliF, putative [Roseobacter sp. GAI101] gi|214043994|gb|EEB84632.1| flagellar M-ring protein FliF, putative [Roseobacter sp. GAI101] Length = 422 Score = 300 bits (767), Expect = 5e-79, Method: Composition-based stats. Identities = 118/412 (28%), Positives = 192/412 (46%), Gaps = 15/412 (3%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 AI+ Q L + T R L + + L +A V SP LY LE Sbjct: 3 AIVQQFLNIWAGLTF---RRQLTIVAATLAMFFGVLAMSKMVASPTLTLLYAGLESGAAG 59 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 + AL + + + + G SI V + + R+ LA++GLP++ N GYEL D + FG Sbjct: 60 DVVRALEQRGVVYEVR--GGSIFVDAKARDELRLTLASEGLPANG-NRGYELLDNLTGFG 116 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 TS M + RA EGE+ARTI + I ARVHI F++ G P ASV + Sbjct: 117 TTSQMFDAAYWRAKEGELARTIVANPQISMARVHIAGTGSNPFQR-GVVPKASVSLTPNG 175 Query: 182 PS-VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240 A+A+R LVA+AV L DV V+D+ G L+ +++ Sbjct: 176 GEISAAEAKAVRFLVASAVAGLSPDDVAVIDANGSLIGSSDDAMPTSQGDDKAEM----- 230 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 + + + L A +G+ N V + +++ +RE +DP+ +V S ++ S + Sbjct: 231 FKEKVQRILEARVGLGNAIVEVSVDTETESESVRERRFDPEGRVAISTDT-EERSNSSSD 289 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 VTV N+P ++ + S + + E+ NYE++ ++R+++A Sbjct: 290 AGSGDVTVASNLP-SNNGQPGGDSSSSSNSETRERVNYEVSETEREIVRAPGAVKRITVA 348 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 V++N T+ G Q + D+ L + ++VS+A G ++ RGD ITI SM Sbjct: 349 VLINDAIATDESGVETSQPRDDTELEALRELVSSAVGFDAERGDIITIKSMA 400 >gi|68164520|gb|AAY87249.1| predicted flagellar basal-body M-ring protein [uncultured bacterium BAC17H8] Length = 573 Score = 300 bits (767), Expect = 6e-79, Method: Composition-based stats. Identities = 118/568 (20%), Positives = 229/568 (40%), Gaps = 34/568 (5%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 MA+L +L G R + +A + + I L P LY L ++ Sbjct: 25 MAVLYRLT-----GGQSLRQVLPAVAGITVAVIGLVFFVV--SQQPERTTLYASLPEAEK 77 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 R+ AL A +D + + + VP +R+ LAAQGLP+S + L D Sbjct: 78 ARVVDALKNAGVDVVLDPSTGDVIVPVKDYHSSRMTLAAQGLPASIPDGYDSLSDI--PM 135 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 G + ++ + ++ E E+AR+I I G+V ARVH+ +P+ F + PTASV ++ Sbjct: 136 GSSRSVENVRLKQSQEIELARSISEIDGLVTARVHLAIPEKSVFARSATPPTASVFVQME 195 Query: 181 NPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQA 236 N + +AI HLV+++VP + DVTV+D G LL+ + + L Sbjct: 196 NGRSLSRQQVDAIVHLVSSSVPFMAKNDVTVVDQYGNLLSRPPQDSAGMMSDAQLEHRIR 255 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 ++ + ++ +G N + V +++ ++ E V DP+ RS + S ++ Sbjct: 256 LEEIYRNRVIALVSPIVGAGNVTAQVNLDIDFTRSEVTEEVMDPEGTALRSEQSS--SES 313 Query: 297 SETSQPESAVTVEQNMPHVS---DRKVPLPRSLENTDK---KEEQSNYEINTKSIATTHD 350 S + N D + + S N ++ + NYE++ T Sbjct: 314 SAEIIAKGVPGATSNRAPTQTDIDTQQNVDSSDPNANRARSQSSTRNYEVSRTVSTTQRP 373 Query: 351 NYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 + ++ + AV+V + + G + L EI +V+ A GI+ RGD +T++ Sbjct: 374 SSQITGIQAAVLVREMEVMNAETGLMEVSEIPEEKLKEIEALVANAIGIDDGRGDRLTVS 433 Query: 410 SMDFLEN-QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 S F+ + + + ++ R T++ V ++G + R L N Sbjct: 434 SSTFVSALEGIKKPWYDMDWAIMIMRQGLTILIMAVVVLGVI----------RPLINRVM 483 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 G + + T + D + + +++ + Sbjct: 484 VPTAAGGPGEAIVTADDDVDLDTVEIQEGESLEDIKAKLKPKKAAISAEMLDTANTYDDK 543 Query: 529 LRLLHMIEINE-ERFAKILRKWARSEIE 555 + ++ MI +E R + + + + +++ Sbjct: 544 VAVIRMIVSDEAGRVSNVFKSMMQQDMD 571 >gi|332558480|ref|ZP_08412802.1| FliF [Rhodobacter sphaeroides WS8N] gi|2494549|sp|Q53151|FLIF_RHOSH RecName: Full=Flagellar M-ring protein gi|1419203|emb|CAA67251.1| FliF protein [Rhodobacter sphaeroides] gi|332276192|gb|EGJ21507.1| FliF [Rhodobacter sphaeroides WS8N] Length = 570 Score = 299 bits (766), Expect = 8e-79, Method: Composition-based stats. Identities = 121/572 (21%), Positives = 227/572 (39%), Gaps = 43/572 (7%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 +LDQ+ +F R + A +IL +L +A + P LY L ++ Sbjct: 23 GMLDQIRRF----GDQPGLRRAMPAILILAVTVLALAGWILLREPARVTLYPGLPEAEKA 78 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 R+ +L+ I I + ++VP + +AR+ LAAQGLP + L D G Sbjct: 79 RVIDSLTGGGIAAVIDERTGEVAVPGAEYHRARMLLAAQGLPQGLPDGNALLSDL--PMG 136 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 + ++ +A E ++AR+I IS + AARVH+ +P+ +F + P ASV ++ + Sbjct: 137 TSKSVETARLRQAQELDLARSITEISAVSAARVHLALPERSAFLRESQPPRASVFLQIVP 196 Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAI 237 EAI +LV+++VP + DVTV+D G+LL+ + + + L + Sbjct: 197 GRTLDGAQVEAIVNLVSSSVPGMARQDVTVVDQMGRLLSRGSDDPAVLLNDRQLQHRVQL 256 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + I L G N V +++ Q+IRE DPD + + + + Sbjct: 257 ETLYRNRIESLLTPIAGPGNLAVQVTIDMDFTRQEIREEQVDPDRTALLAEQSQIEE--T 314 Query: 298 ETSQPESAVTVEQNMP--------HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 Q N P + + + N+E++ K T Sbjct: 315 ADPQARGIPGAVSNSPPPEAALEAGAPPTAAGEAAAPMRSRSQNSTRNFEVSRKVETTLP 374 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL--AEINKIVSAATGINSRRGDTIT 407 ++ R+S AVVV +A + A++ ++ +A G ++ RGD +T Sbjct: 375 ATARIARVSAAVVVRAQPQPAATDPAAPPPPLLPEALKADLERLTRSAVGFDADRGDVVT 434 Query: 408 ITSMDFLENQLFNS-GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 IT+ FL+ + + G ++ L+R + V + L +R + N Sbjct: 435 ITAQPFLDTVVPEASGWSAEPWVADLARQGFLLAALAV----------VALGVVRPILNR 484 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI--NSYVS 524 + T + + +LD + + L + + Sbjct: 485 --------VLLPAPAAAGALPLGETAVEVGEGESLDDVRARLKARQGALTKNMLDAARSH 536 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIED 556 ++ L + ++E +E R A +R+ +E++ Sbjct: 537 EEQILVIRKLVEEDEGRIATTIRQMIAAELDT 568 >gi|206895778|ref|YP_002246683.1| flagellar M-ring protein FliF [Coprothermobacter proteolyticus DSM 5265] gi|206738395|gb|ACI17473.1| flagellar M-ring protein FliF [Coprothermobacter proteolyticus DSM 5265] Length = 521 Score = 299 bits (766), Expect = 8e-79, Method: Composition-based stats. Identities = 112/554 (20%), Positives = 215/554 (38%), Gaps = 45/554 (8%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +L L+ F+K+ + I+++ V LV I +++N P Y L+ L Sbjct: 8 VLKDLVNFWKNLEKNQKRNIIVVLVVALVAIG---GLVYYLNRPQYALLFSDLMPEQAQA 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L N+ +++S +G+SI VP+ V R+ LA+ GL S+ GYELFD +++ L Sbjct: 65 IVSQLESQNVRYKLSSDGASIYVPNDKVTSLRLELASSGLV-GSTKPGYELFDNISNIFL 123 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T Q+I RALEGE+ RTI + G+ + VH+ +P + + + + P Sbjct: 124 TQEEQQIMYQRALEGELERTISGMPGVKSVSVHLSLPQRSLWTVTSTQTAQGAVYLTLKP 183 Query: 183 SVYK---SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQH 239 EAIR LVA AV + +V + +++ +L + + + L I + + Sbjct: 184 GYSLSANQVEAIRQLVAHAVEGMSPENVVIAEASTGILAGDLAQSGVDKGYLEIKKQLDE 243 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 I L G +N + ++ + Q I+ + + S S + S Sbjct: 244 LYASKIRSFLGQTFGPENIMVSADVDVEVTKQNIQSETWGNTATKNVSDTESWSSSSSSG 303 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 +A V +P +++Q NYEI+ +++ + I Sbjct: 304 GPVGTATNVPGAIPSYVYTSTGEG---PYNYYRQQQINYEISRTISEIVPQEVEIKNVKI 360 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 A +V+ + ++ + ++++A G+++ RGD +TSM F Sbjct: 361 AAIVDSSVFKDYAVTAST----------VESLIASAAGLDNARGDVALVTSMPFASLARE 410 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + R A + + + V LL+ + LRR Sbjct: 411 KEAQEAQLLAEAQRR--ARLYSYIAIAVVALLILAMVFILLRRSRR-------------- 454 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 +P P+ + G + S + + ++ + + ++ + Sbjct: 455 TAPAPVPAGAGLGEALGQPRPIISLERPLTPEEEKIKLAMEE---------IQKALQEHP 505 Query: 540 ERFAKILRKWARSE 553 A ++R W + E Sbjct: 506 NDVADLVRMWMQEE 519 >gi|239826613|ref|YP_002949237.1| flagellar MS-ring protein [Geobacillus sp. WCH70] gi|239806906|gb|ACS23971.1| flagellar M-ring protein FliF [Geobacillus sp. WCH70] Length = 527 Score = 299 bits (765), Expect = 9e-79, Method: Composition-based stats. Identities = 116/574 (20%), Positives = 222/574 (38%), Gaps = 79/574 (13%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L + F+K T + + + +AS+ L ++ +A +F + LY L + +I Sbjct: 9 LSRFTLFWKERTK--KQKWIAIASLALFLLITGVAI-YFATRTEFAPLYSNLTPQEAGQI 65 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L + + ++DNG++I VP +V ++ LAA+G+P+S + Y F K SFG+T Sbjct: 66 KATLDQRGVKSEVADNGTTIKVPKELVNSLKVDLAAEGIPNSGT-IDYSYFGKNASFGMT 124 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA-RPTASVMIRAINP 182 + ++ A++ E+A I+SI G+ A+V I +P F +AS++++ Sbjct: 125 DNEFNVVKLEAMQNELANLIKSIDGVEDAKVMINLPQPSVFASDDQGEASASIVLKTKPG 184 Query: 183 S--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG----KSLSIVQA 236 + A+ HLV+ +VPNL ++ +++ + E G I + Sbjct: 185 YQFSDQQIRALYHLVSKSVPNLPTDNIVIMNQFFEYFDLKNNENFSTGTTFATQQEIKKQ 244 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIRLS 291 I+ +I+ + + L +G D +V A+++ + E + P + + S++ Sbjct: 245 IERDIQRQVQQMLGTMMGQDKVVVSVTADVDFTQENREENLVAPVDEKNNEGIAVSVQRI 304 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 K+ + +QP +N V + + + ++ EE N E+N Sbjct: 305 KETYSGKGAQPGGVAGTGEN--EVPSYQAGASETNGDYERTEETINNEVNKIKKHIVESP 362 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT---- 407 YK+ L I V+V S Q ID + IV + N + G T+T Sbjct: 363 YKIRDLGIQVMVEPPNPKNP--NSLPQQTIDDIQKILGTIVRTSI--NKQDGQTLTDQDI 418 Query: 408 -----ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGT---LLVTFLGLHA 459 ++ F F + V++VG +L+ L + Sbjct: 419 QNRIVVSVQKFNGKPTFTEPKQTIPMW--------------VYIVGGIGLVLLIALLILL 464 Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519 RR ++ ++ ++ + P I Sbjct: 465 WRRRKEEEEEEEEDILEPMVQEIPDIHEE------------------------------- 493 Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 N S +L + + + FAK+LR W E Sbjct: 494 NETESTMRRKQLEKLAKEKPDEFAKLLRTWLSEE 527 >gi|188586017|ref|YP_001917562.1| flagellar M-ring protein FliF [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350704|gb|ACB84974.1| flagellar M-ring protein FliF [Natranaerobius thermophilus JW/NM-WN-LF] Length = 519 Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats. Identities = 122/567 (21%), Positives = 220/567 (38%), Gaps = 69/567 (12%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 +Q QF+ + L + + + A+ + + I+ + + Y + L+ D + Sbjct: 7 NAKNQSQQFWGN---LSKGQKITFATALGLFIIGTLVLSVSMLQTDYTEVARDLDPRDAS 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I+ + + + ++I D GS I VP + R+ LA GLP GYE D G Sbjct: 64 EIAEMIEDMGVSYQIEDGGSRILVPEDDHDQVRLELAGAGLPRGGV-LGYEELDTQQ-LG 121 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI- 180 LT +E+ + ALEGE+ RTI+ + ARVH+V+P+ F + A+V + Sbjct: 122 LTESEREMRQKIALEGELVRTIRRYPEVEDARVHLVLPERSIFEETREDSQAAVFLDLEP 181 Query: 181 -NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---------ILGKS 230 + +I +LVA +V L +VT+ ++G + +++ + + + K Sbjct: 182 HRELTEQQISSIVNLVAHSVEGLTPKNVTL--TSGDRMLSDKTQSDDKNSPSAGSEVEKR 239 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERS 287 LSI + Q+ ++ ++ L +G N + V AEL+ D + +++P D + S Sbjct: 240 LSIQEEFQNTLQSSVESMLENIVGRGNVTARVNAELDFDEFESFSELFEPVEGDEGILVS 299 Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 + ++ E ++V + ++ +E NYE+N + Sbjct: 300 MHREEEFYSGEDVSQGGVPGDPAEGTPEY-QEVTGEGGSFDYERIDETRNYEVNKIEERS 358 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN-SRRGDTI 406 L +LS+AV VN Q + + I +V A GIN I Sbjct: 359 RLAPGALNKLSVAVAVN-------------QELDEDEMDSIEALVEDAVGINLENENHQI 405 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 T+ MDF + + A + +G ++ L L + I Sbjct: 406 TVEQMDFDTSLQDMLAAQHEK-----KQQMAAQQRWITLGIGAAVLVVLALIGRKIYKTI 460 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 D K+ E + M D A +++DI +Q +I+ Sbjct: 461 RDRKEIE-------------DRLEREQMVQDQAA---ASEDIEPEVPKVQKQISD----- 499 Query: 527 SDLRLLHMIEINEERFAKILRKWARSE 553 E E FAK+L+ W E Sbjct: 500 -------FAEKKPEEFAKVLKAWLAEE 519 >gi|170288525|ref|YP_001738763.1| flagellar M-ring protein FliF [Thermotoga sp. RQ2] gi|170176028|gb|ACB09080.1| flagellar M-ring protein FliF [Thermotoga sp. RQ2] Length = 532 Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 100/474 (21%), Positives = 197/474 (41%), Gaps = 28/474 (5%) Query: 1 MAILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLE 56 M I+++L +K +S+ R R ++ + + ++ + + PHY L L Sbjct: 1 MNIVERLRDLWKKIVDMWSSMPRERKFLVGGIGIALVITIVLFAVVTSVPHYRLLVAGLN 60 Query: 57 VSDVNRISVALSEANIDFRISDNGSSISVPSS-MVGKARIHLAAQGLPSSSSNSGYELFD 115 + I L E NI +++S G I VP S V + R+ LA++G+ SS G+ + Sbjct: 61 EDEAGVIIQKLEEMNIPYKVSPGGD-IYVPDSYNVYELRMKLASEGV-LGSSRKGFSIL- 117 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK-IGARPTAS 174 NSFG TSF +++ AL+ E+ R+I +I G+ ARVH+V+P + + A P AS Sbjct: 118 SENSFGATSFDKQVKYQIALQEELERSIMTIKGVKDARVHLVLPKYTYYVRGEMAEPRAS 177 Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGK 229 V++ + I LV+ AV L +V V+D+ + L+ + + Sbjct: 178 VLVVLEPGAELTREQVRGIVELVSGAVEGLKPENVRVVDNYSRSLSDMLETDEGTFLASS 237 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 L + Q ++ E I KAL + G +N + Y+ ++ E +R Sbjct: 238 KLELKQQLEKYYESKIKKALESVFGPGRVEVIPDISINWSKIETEMKKYEAPARREGLVR 297 Query: 290 LSK-DAQRSETSQP-ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 + ++S+ P + N+P + + ++ +NYE+N Sbjct: 298 SQETQVEKSQNLSPTGGPAGTDSNIPPFTYPSATSEGT-STYERTHTITNYELNEVYQKI 356 Query: 348 THDN-YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG-INSRRGDT 405 + ++ LS+AV+++ + + IN +V G I S + Sbjct: 357 IQNREGEISSLSVAVIIDASSSVLQNNSD--------WSSVINDLVEKGVGSITSSASLS 408 Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA 459 + + + F + + + ++ ++ R + + T ++ +L + Sbjct: 409 VAVAFLPF-DRSIERALQEELKQIETRRRFILYSVGIALLGFLTFILIYLVIVQ 461 >gi|196247639|ref|ZP_03146341.1| flagellar M-ring protein FliF [Geobacillus sp. G11MC16] gi|196212423|gb|EDY07180.1| flagellar M-ring protein FliF [Geobacillus sp. G11MC16] Length = 527 Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 87/446 (19%), Positives = 175/446 (39%), Gaps = 31/446 (6%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 + F++ T + + L + + +V + + FF LY L + +I Sbjct: 11 RARSFWQERTK--KQKWLAIGGIAVVLFSIGIGV-FFATRTEMVPLYSNLTPQEAGQIKA 67 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L + ++D G++I VP V ++ LAA+G+P+S Y F + SFG+T Sbjct: 68 TLDGRGVSAEVADGGTTIKVPKEQVDALKVELAAEGIPNSGV-IDYSFFGQNASFGMTDN 126 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA-RPTASVMIRAINPS- 183 + +++A++ E+A +++I G+ A+V I +P F +AS+++R Sbjct: 127 EFNMVKLKAMQTELANLMKTIDGVEDAKVMINLPQPSVFVSDEKGEASASIVLRTKPGYQ 186 Query: 184 -VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG----KSLSIVQAIQ 238 + A+ HLVA +VPNL ++ +++ + N G I + I+ Sbjct: 187 FSDEQIRALYHLVAKSVPNLSTDNIVIMNQFFEYFDLKNDSGNSTGATFASQQQIKKQIE 246 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIRLSKD 293 +I+ + + L +G D +V A+++ ++ E + P D + S++ K+ Sbjct: 247 RDIQRQVQQMLGTMMGQDKVVVSVTADVDFTQEKREENLVAPVGEENDEGIAVSVQRIKE 306 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 + P N + + N ++ EE N E+N YK Sbjct: 307 TYAGSGAPPGGTAGTGTN--ETPGYQGASGATNGNYERTEETINNEVNKIKKQIVESPYK 364 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI-NKIVSAAT--G-----INSRRGDT 405 + L I V+V + ++ + + + +I IV + G + Sbjct: 365 IRDLGIQVMVEP---PDPDDPNSLTPEAVNDIQKILGTIVRTSIDKGEAQTLTDEDINSR 421 Query: 406 ITITSMDFLENQLFNSGTV--QVSFM 429 I ++ F F + Sbjct: 422 IVVSVQKFNGKPTFTEPDPVRPAWWW 447 >gi|150019080|ref|YP_001311334.1| flagellar MS-ring protein [Clostridium beijerinckii NCIMB 8052] gi|149905545|gb|ABR36378.1| flagellar M-ring protein FliF [Clostridium beijerinckii NCIMB 8052] Length = 522 Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 101/529 (19%), Positives = 216/529 (40%), Gaps = 58/529 (10%) Query: 38 AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97 + F+ +S Y L+ L+ +D + +L+E +D +I N ++I VP V K R+ L Sbjct: 39 SGIFYSSSNKYQVLFSDLDAADAQTVVNSLNEKKVDTKIDSNTNTIWVPKDQVDKLRLEL 98 Query: 98 AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 A +S + GYEL D +SFG+T +I +VR +GE+ +TI+S + ARVHI Sbjct: 99 AP---TLTSGSKGYELMDSGSSFGMTDEEFKIKKVRMQQGELEKTIKSFPQVEEARVHIT 155 Query: 158 MPDMGSFRKIGARPTASVMIRAINPSV--YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 F K A+V ++ + ++I LV+ A N+ ++ V+D Sbjct: 156 EAKDSVFVKDKEPGKAAVYLKLKKGTTIGEDQVKSIVALVSGATENIPRENIDVIDDNMN 215 Query: 216 LLTAN-------EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM 268 LLT + + + K + + ++ I L +G ++ V L+ Sbjct: 216 LLTKDINSDKNNSVSSEAISKQQDAEKNYEDRMQKAIVSLLEPIVGKGKVKATVNVNLDF 275 Query: 269 DTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 D++Q + V DP+ + + T+ +S V + + P Sbjct: 276 DSKQKTQTVVDPNKVIVSQENSKETNNSGSTATSQSPVDNNMSNTTTATNNNPSA----- 330 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 + K+++++NYE+ +++RL+ +V+V+ + + Sbjct: 331 SSKEDQKTNYEVGKSESKVISAPGEVKRLTASVMVDGN-------------LDAATQQTL 377 Query: 389 NKIVSAATGINSRRGDTITITSMDF---LENQLFNSGTVQVSFMDILSRHFATVINALVF 445 V A G+++ RGD +++ M F ++Q + + ++ ++ ++ Sbjct: 378 ENAVGNAIGLDALRGDKVSVVGMAFDTTAQDQAKSEIDAMNAEAATAGKNKMMIVAGVLG 437 Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505 + +V F RR N ++ ++ +++ + ++P ++ D Sbjct: 438 ALLLGMVIFFIAR--RRKKNKEENEE------------LLNTLIDDTILPKES---DEVF 480 Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + I S+ +S + + + + + E+ +I++ W Sbjct: 481 EPIEFESKTQKSHLEEEIKRYATEK--------PEQVVEIIKSWLTENE 521 >gi|332669190|ref|YP_004452198.1| flagellar M-ring protein FliF [Cellulomonas fimi ATCC 484] gi|332338228|gb|AEE44811.1| flagellar M-ring protein FliF [Cellulomonas fimi ATCC 484] Length = 535 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 119/537 (22%), Positives = 221/537 (41%), Gaps = 39/537 (7%) Query: 20 TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN 79 R L L V ++ + F A +++ P L+ L +D + + L+ A + ++++D Sbjct: 23 QRTLGLIGVAVLLLGAF-ALSTYLSRPTMSPLFSGLSGADASAVVDELTAAGVQYQLADG 81 Query: 80 GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEI 139 GS++ VP + + RI LAA GLP+++ GY L D+ + F Q+ T RALEGE+ Sbjct: 82 GSTVLVPDAQLYDQRIRLAAAGLPTNADGGGYSLLDE-MPMTSSEFQQQTTYQRALEGEL 140 Query: 140 ARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAA 197 ART+ +I G+ +A V + +P+ F A PTASV IR +AI HLV+A Sbjct: 141 ARTVGAIDGVESASVKLALPEESVFVSEKADPTASVFIRTRPGTSLSLDQVQAIVHLVSA 200 Query: 198 AVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDN 257 + + DV V+D+TG++L+A G + + + ++ L +G Sbjct: 201 GIDGMTPTDVAVVDATGEVLSAV-GTGTTGGVAGQQASDYEARVAASVQALLDPLVGPGR 259 Query: 258 FRSAVVAELNMDTQQIREIVY--DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV 315 V AE++ + PD+ S + + + + V N+ Sbjct: 260 SAVTVTAEIDQSQTDRTVEEFTATPDTPPLASS-TTTETYTGGAASGAAGVLGPDNIQVP 318 Query: 316 SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS 375 + S E+T E+ +N +N + TT ++R S+AVV+++ + Sbjct: 319 NGDGTTGEGSYEST--TEDVTN-AVNKSTERTTQGPGAIQRQSVAVVLDEKAAAPID--- 372 Query: 376 ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ--LFNSGTVQVSFMDILS 433 LA++ + ++AA GI+ RGDTI + ++ F Q + + + Sbjct: 373 ---------LAQLRETIAAAAGIDPERGDTIAVQAVPFDTTQAEEAGAALAAAEEAEKAA 423 Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493 + + + A + V L+ + + RR I + Sbjct: 424 QQTSLIRQAAIGGVVLALLLAIAIAMTRRSRKARRTA--------------IDLGELQPV 469 Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 + ++ AL+ +D + + + + + A +LR W Sbjct: 470 LTDEQRALEGLPEDALPELPPGPLPGEPDPVARKRAEITALADDQPQEVADLLRGWL 526 >gi|257871289|ref|ZP_05650942.1| flagellar M-ring protein fliF [Enterococcus gallinarum EG2] gi|257805453|gb|EEV34275.1| flagellar M-ring protein fliF [Enterococcus gallinarum EG2] Length = 540 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 125/559 (22%), Positives = 245/559 (43%), Gaps = 39/559 (6%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 +QL ++ +SL + +I+ ++ + + A + Y L+ L +D IS Sbjct: 9 EQLKDRWQMQSSL---KKMIVVLSVISVLGITAAVYYLNTRIEYGILFTDLSDADAGTIS 65 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG-LPSSSSNSGYELFDKVNSFGLT 123 L E I ++++DNG++I + V + RI+LA LP++S +G+ELFD N T Sbjct: 66 KDLEEQQIAYKLADNGTTILIDKDQVDEYRINLAVDNKLPNTS--TGFELFDDAN-MMTT 122 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 ++I RA+ GE+ R I+SI + +A+V +VMP+ F + PTAS+++ N Sbjct: 123 DEDRKIMYQRAVTGELQRAIESIDAVKSAKVLLVMPEESVFSSEESAPTASIVLTLKNQQ 182 Query: 184 -VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME----RNILGKSLSIVQAIQ 238 +S + I L + AV L +V V+DS G LT E E + K ++I + + Sbjct: 183 ISDESVQGIVTLTSGAVEKLKPENVKVVDSAGNTLTRTEDEASQLSGLNNKYIAIKDSYE 242 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 +E + K L G D F+ ++ +LN D+ + +++ YD E + A Sbjct: 243 KTLEEKVAKLLTPIYGADKFQVSINLDLNFDSIERKKVTYD---DPEIKSETVQAAGSQG 299 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 T Q TV+ N+ +V+ S + + E++T++ T +ER++ Sbjct: 300 TVQEAQTGTVDDNVSNVTGTDGEGNNSYSRSVEN------ELDTETTTTITAPGMIERMT 353 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 ++V+N + AE+ +++++A G ++ RGD I I DF + ++ Sbjct: 354 SSIVINAN-------------LSQADQAELQQLIASAVGYDNDRGDQIAIQGFDFAQAEV 400 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 + Q + ++ + ++ LV + + +RR D+ + Sbjct: 401 DPAADPQGNEPIAAAKGYLKYAIIGGIVLTLFLVILMIVGVIRRRRKEDELEVDVTEEMV 460 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS-----DLRLLH 533 + P S + + + + N+ + ++ ++ S D + Sbjct: 461 TFAQPSAVSTGASPTVAQEVVFGGVGNRSAETKPAAPEASTQETAAEHSGEPTLDQTARN 520 Query: 534 MIEINEERFAKILRKWARS 552 E N E A++++ W + Sbjct: 521 YAESNPEVAAELIKAWMKE 539 >gi|148269839|ref|YP_001244299.1| flagellar M-ring protein FliF [Thermotoga petrophila RKU-1] gi|281412278|ref|YP_003346357.1| flagellar M-ring protein FliF [Thermotoga naphthophila RKU-10] gi|147735383|gb|ABQ46723.1| flagellar M-ring protein FliF [Thermotoga petrophila RKU-1] gi|281373381|gb|ADA66943.1| flagellar M-ring protein FliF [Thermotoga naphthophila RKU-10] Length = 532 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 101/474 (21%), Positives = 198/474 (41%), Gaps = 28/474 (5%) Query: 1 MAILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLE 56 M I+++L +K S+ R R ++ + + ++ + + PHY L L Sbjct: 1 MNIVERLRDLWKKIVELWNSMSRERKFLVGGIGIALVITIVLFAVVASVPHYRLLVAGLN 60 Query: 57 VSDVNRISVALSEANIDFRISDNGSSISVPSS-MVGKARIHLAAQGLPSSSSNSGYELFD 115 + I L E NI +++S G I VP S V + R+ LA++G+ SS G+ + Sbjct: 61 EDEAGVIIQKLEEMNIPYKVSPGGD-IYVPDSYNVYELRMKLASEGV-LGSSRKGFSIL- 117 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK-IGARPTAS 174 NSFG TSF +++ AL+ E+ R+I +I G+ ARVH+V+P + + A P AS Sbjct: 118 NENSFGATSFDKQVKYQIALQEELERSIMTIKGVKDARVHLVLPKYTYYVRGEMAEPRAS 177 Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGK 229 V++ + I LV+ AV L +V V+D+ + L+ + + Sbjct: 178 VLVVLEPGAELTREQVRGIVELVSGAVEGLKPENVRVVDNYSRSLSDMLETDEGTFLASS 237 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 L + Q ++ E I KAL + G +N + Y+ ++ E +R Sbjct: 238 KLELKQQLEKYYESKIKKALESVFGPGRVEVIPDISINWSKIETEMKKYEAPARREGLVR 297 Query: 290 LSK-DAQRSETSQP-ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 + ++S+ P + N+P ++ + ++ +NYE+N Sbjct: 298 SQETQVEKSQNLSPTGGPAGTDSNIPPLTYPSATSEGT-STYERTHTITNYELNEVYQKI 356 Query: 348 THDN-YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG-INSRRGDT 405 + ++ LS+AV+++ S+ + IN +V G I S + Sbjct: 357 IQNREGEISSLSVAVIID--------ASSSVLQNSSDWSGVINDLVEKGVGSITSSASLS 408 Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA 459 + + + F + + + ++ ++ R + + T ++ +L + Sbjct: 409 VAVAFLPF-DRSIERALQEELKQIETRRRFILYSVGIALLGFLTFILIYLVIVQ 461 >gi|138894740|ref|YP_001125193.1| flagellar MS-ring protein [Geobacillus thermodenitrificans NG80-2] gi|134266253|gb|ABO66448.1| Flagellar basal-body M-ring protein [Geobacillus thermodenitrificans NG80-2] Length = 527 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 86/446 (19%), Positives = 174/446 (39%), Gaps = 31/446 (6%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 + F++ T + + L + + +V + + FF LY L + +I Sbjct: 11 RARSFWQERTK--KQKWLAIGGIAVVLFSIGIGV-FFATRTEMVPLYSNLTPQEAGQIKA 67 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L + ++D G++I VP V ++ LAA+G+P+S Y F + SFG+T Sbjct: 68 TLDGRGVSAEVADGGTTIKVPKEQVDALKVELAAEGIPNSGV-IDYSFFGQNASFGMTDN 126 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA-RPTASVMIRAINPS- 183 + +++A++ E+A +++I G+ A+V I +P F +AS+++R Sbjct: 127 EFNMVKLKAMQTELANLMKTIDGVEDAKVMINLPQPSVFVSDEKGEASASIVLRTKPGYQ 186 Query: 184 -VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL----GKSLSIVQAIQ 238 + A+ HLVA +VPNL ++ +++ + N I + I+ Sbjct: 187 FSDEQIRALYHLVAKSVPNLSTDNIVIMNQFFEYFDLKNDSGNSTRATFASQQQIKKQIE 246 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIRLSKD 293 +I+ + + L +G D +V A+++ ++ E + P D + S++ K+ Sbjct: 247 RDIQRQVQQMLGTMMGQDKVVVSVTADVDFTQEKREENLVAPVGEENDEGIAVSVQRIKE 306 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 + P N + + N ++ EE N E+N YK Sbjct: 307 TYAGSGAPPGGTAGTGTN--ETPGYQGASGATNGNYERTEETINNEVNKIKKQIVESPYK 364 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI-NKIVSAAT--G-----INSRRGDT 405 + L I V+V + ++ + + + +I IV + G + Sbjct: 365 IRDLGIQVMVEP---PDPDDPNSLTPEAVNDIQKILGTIVRTSIDKGEAQTLTDEDINSR 421 Query: 406 ITITSMDFLENQLFNSGTV--QVSFM 429 I ++ F F + Sbjct: 422 IVVSVQKFNGKPTFTEPDPVRPAWWW 447 >gi|257875991|ref|ZP_05655644.1| flagellar M-ring protein fliF [Enterococcus casseliflavus EC20] gi|257810157|gb|EEV38977.1| flagellar M-ring protein fliF [Enterococcus casseliflavus EC20] Length = 540 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 126/559 (22%), Positives = 246/559 (44%), Gaps = 39/559 (6%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 +QL ++ +SL + +I+ ++ + + A + Y L+ L +D IS Sbjct: 9 EQLKDRWQMQSSL---KKMIVVLSVISVLGITAAVYYLNTRIEYGILFTDLSDADAGTIS 65 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG-LPSSSSNSGYELFDKVNSFGLT 123 L E I ++++DNG++I + V + RI+LA LP++S +G+ELFD N T Sbjct: 66 KDLEEQQIAYKLADNGTTILIDKDQVDEYRINLAVDNKLPNTS--TGFELFDDAN-MMTT 122 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 ++I RA+ GE+ R I+SI + +A+V +VMP+ F + PTAS+++ N Sbjct: 123 DEDRKIMYQRAVTGELQRAIESIDAVKSAKVLLVMPEESVFSSEESAPTASIVLTLKNQQ 182 Query: 184 -VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME----RNILGKSLSIVQAIQ 238 +S + I L + AV L +V V+DS G LT E E + K ++I + + Sbjct: 183 ISDESVQGIVTLTSGAVEKLKPENVKVVDSAGNTLTRTEDEASQLSGLNNKYIAIKDSYE 242 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 +E + K L G D F+ ++ +LN D+ + +++ YD E + A Sbjct: 243 KTLEEKVAKLLTPIYGADKFQVSINLDLNFDSIERKKVTYD---DPEIKSETVQAAGSQG 299 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 T Q TV+ N+ +V+ S + + E++T++ T +ER++ Sbjct: 300 TVQEAQTGTVDDNVSNVTGTDGEGNNSYSRSVEN------ELDTETTTTITAPGMIERMT 353 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 ++V+N + AE+ +++++A G ++ RGD I I DF + ++ Sbjct: 354 SSIVINAN-------------LSQADQAELQQLIASAVGYDNDRGDQIAIQGFDFAQAEV 400 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 + Q + ++ + ++ LV + + +RR D+ + Sbjct: 401 DPAVDPQGNEPIAAAKGYLKYAIIGGIVLTLFLVILMIVGVIRRRRKEDELEVDVTEEMV 460 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS-----DLRLLH 533 + P S T+ + + + N+ + ++ ++ S D + Sbjct: 461 TFTQPSAVSTGTSPTVAQEVVFGGVGNRSAETKPAVPEASTQEAAAEHSGEPTLDQTARN 520 Query: 534 MIEINEERFAKILRKWARS 552 E N E A++++ W + Sbjct: 521 YAESNPEVAAELIKAWMKE 539 >gi|257866378|ref|ZP_05646031.1| flagellar M-ring protein fliF [Enterococcus casseliflavus EC30] gi|257873106|ref|ZP_05652759.1| flagellar M-ring protein fliF [Enterococcus casseliflavus EC10] gi|257800336|gb|EEV29364.1| flagellar M-ring protein fliF [Enterococcus casseliflavus EC30] gi|257807270|gb|EEV36092.1| flagellar M-ring protein fliF [Enterococcus casseliflavus EC10] Length = 540 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 128/559 (22%), Positives = 246/559 (44%), Gaps = 39/559 (6%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 +QL ++ +SL + +I+ ++ + + A + Y L+ L +D IS Sbjct: 9 EQLKDRWQMQSSL---KKMIVVLSVISVLGITAAVYYLNTRIEYGILFTDLSDADAGTIS 65 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG-LPSSSSNSGYELFDKVNSFGLT 123 L E I ++++DNG++I + V + RI+LA LP++S +G+ELFD N T Sbjct: 66 KDLEEQQIAYKLADNGTTILIDKDQVDEYRINLAVDNKLPNTS--TGFELFDDAN-MMTT 122 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 ++I RA+ GE+ R I+SI + +A+V +VMP+ F + PTAS+++ N Sbjct: 123 DEDRKIMYQRAVTGELQRAIESIDAVKSAKVLLVMPEESVFSSEESAPTASIVLTLKNQQ 182 Query: 184 -VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME----RNILGKSLSIVQAIQ 238 +S + I L + AV L +V V+DS G LT E E + K ++I + + Sbjct: 183 ISDESVQGIVTLTSGAVEKLKPENVKVVDSAGNTLTRTEDEASQLSGLNNKYIAIKDSYE 242 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 +E + K L G D F+ ++ +LN D+ + +++ YD E + A Sbjct: 243 KTLEEKVAKLLTPIYGADKFQVSINLDLNFDSIERKKVTYD---DPEIKSETVQAAGSQG 299 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 T Q TV+ N+ +V+ EN N E++T++ T +ER++ Sbjct: 300 TVQEAQTGTVDDNVSNVT-----GTDGEENNSYSRSVEN-ELDTETTTTITAPGMIERMT 353 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 ++V+N + AE+ +++++A G ++ RGD I I DF + ++ Sbjct: 354 SSIVINAN-------------LSQADQAELQQLIASAVGYDNDRGDQIAIQGFDFAQAEV 400 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 + Q + ++ + ++ LV + + +RR D+ + Sbjct: 401 DPAVDPQGNEPIAAAKGYLKYAIIGGIVLALFLVILMIVGVIRRRRKEDELEVDVTEEMV 460 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS-----DLRLLH 533 + P S T+ + + + N+ + ++ ++ S D + Sbjct: 461 TFAQPSAVSTGTSPSVAQEVVFGGVGNRSAETKPAVPEASTQEAAAEHSGEPTLDQTARN 520 Query: 534 MIEINEERFAKILRKWARS 552 E N E A++++ W + Sbjct: 521 YAESNPEVAAELIKAWMKE 539 >gi|167574616|ref|ZP_02367490.1| flagellar MS-ring protein [Burkholderia oklahomensis C6786] Length = 448 Score = 297 bits (760), Expect = 4e-78, Method: Composition-based stats. Identities = 104/422 (24%), Positives = 192/422 (45%), Gaps = 23/422 (5%) Query: 45 SPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPS 104 +Y ++ E + +++ L I +RI + + VP + + +AR+ LAA+G+ + Sbjct: 22 EANYKPVFGAREPVQLGQLASVLDGERIPYRIHPDTGQVLVPRADLARARMILAARGV-T 80 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 G E D+ + G + F+Q++ R LE E+A+++ ++ + ARVH+ + SF Sbjct: 81 GQPAPGLEQIDRDDPLGTSQFVQDVRFRRGLESELAQSVMTMEAVEKARVHLSIAKSSSF 140 Query: 165 RK-IGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE 221 G + +ASVM+ + AI +LVA +VPNL V+V+D TG L+A Sbjct: 141 VMMDGEKSSASVMLTLKPGRRLGKEQIAAILNLVAGSVPNLAPSRVSVVDQTGAFLSARV 200 Query: 222 MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD 281 + G + E ++ LA LG+DNFR +V A +N D + + Sbjct: 201 DLDDDFGDGNDAAARFRDETIRSVQDLLAPTLGIDNFRVSVTAAVNNDRVEEMREQFG-- 258 Query: 282 SKVERSIRLSKDAQRSETSQPESAVTVEQNMPH-VSDRKVPLPRSLENTDKKEEQSNYEI 340 + +++ +A R E ++ A+ V ++ + D P++ + + Y Sbjct: 259 ----EAPKVTNEATRDEQNRDRIALGVPGSLSNRPVDAPASAPQADDGVQRHATTRQYAY 314 Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400 + H +LE+LS+AVV+N + + + LA I +I+ GI++ Sbjct: 315 DRNVTQIKHSRGRLEKLSVAVVLN-----NAVSPAKGKPWSAEQLAHIEQILRNGLGIDA 369 Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460 +RGD + ++S+DF N+ + L + V + +G LL+ L L Sbjct: 370 QRGDQLVVSSLDF---PAPNAPEPWWRERETLEQGGWYV----AYAIGALLLYLLVARPL 422 Query: 461 RR 462 R Sbjct: 423 LR 424 >gi|325567531|ref|ZP_08144198.1| flagellar M-ring protein fliF [Enterococcus casseliflavus ATCC 12755] gi|325158964|gb|EGC71110.1| flagellar M-ring protein fliF [Enterococcus casseliflavus ATCC 12755] Length = 541 Score = 296 bits (758), Expect = 6e-78, Method: Composition-based stats. Identities = 123/560 (21%), Positives = 243/560 (43%), Gaps = 41/560 (7%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 +QL ++ +SL + +I+ ++ + + A + Y L+ L +D IS Sbjct: 10 EQLKDRWQMQSSL---KKMIVVLSVISVLGITAAVYYLNTRIEYGILFTDLSDADAGTIS 66 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG-LPSSSSNSGYELFDKVNSFGLT 123 L E I ++++DNG++I + V + RI+LA LP++S +G+ELFD N T Sbjct: 67 KDLDEQQIAYKLADNGTTILIDKDQVDEYRINLAVDNKLPNTS--TGFELFDDAN-MMTT 123 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 ++I RA+ GE+ R I+SI + +A+V +VMP+ F + PTAS+++ N Sbjct: 124 DEDRKIMYQRAVTGELQRAIESIDAVKSAKVLLVMPEESVFSSEESAPTASIVLSLKNQQ 183 Query: 184 -VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME----RNILGKSLSIVQAIQ 238 +S + I L + AV L +V V+DS G LT E E + K ++I + + Sbjct: 184 ISDESVQGIVTLTSGAVEKLKPENVKVVDSAGNTLTRTEDEASQLSGLNNKYIAIKDSYE 243 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 +E + K L G D F+ ++ +LN D+ + +++ YD E + A Sbjct: 244 KTLEEKVAKLLTPIYGADKFQVSINLDLNFDSIERKKVTYD---DPEIKSETVQAAGSQG 300 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 T Q TV+ N+ +V+ S + + E++T++ T +ER++ Sbjct: 301 TVQEAQTGTVDDNVSNVTGTDGEGNNSYSRSVEN------ELDTETTTTITAPGMIERMT 354 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 ++V+N + AE+ +++++A G ++ RGD I I DF + ++ Sbjct: 355 SSIVINAN-------------LSQADQAELQQLIASAVGYDNDRGDQIAIQGFDFAQAEV 401 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 + Q + ++ + ++ LV + + +RR +D + +V + Sbjct: 402 DPAADPQGNEQIAAAKGYVKYAIIGGIVLTLFLVILMIVGVIRR-RRKEDELEVDVTDEM 460 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS------DLRLL 532 + P ++++ + + + + D Sbjct: 461 VTFAQPSAASIGASNPVAQEVVFGGVGNRSAETKPAVPEASTQEATAEHTGEPTLDQTAR 520 Query: 533 HMIEINEERFAKILRKWARS 552 + E N E A++++ W + Sbjct: 521 NYAESNPEVAAELIKAWMKE 540 >gi|167567191|ref|ZP_02360107.1| flagellar MS-ring protein [Burkholderia oklahomensis EO147] Length = 441 Score = 296 bits (758), Expect = 7e-78, Method: Composition-based stats. Identities = 104/422 (24%), Positives = 191/422 (45%), Gaps = 23/422 (5%) Query: 45 SPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPS 104 +Y ++ E + +++ L I +RI + + VP + + +AR+ LAA+G+ + Sbjct: 22 EANYKPVFGAREPVQLGQLASVLDGERIPYRIHPDTGQVLVPRADLARARMILAARGV-T 80 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 G E D+ + G + F+Q++ R LE E+A+++ ++ + ARVH+ + SF Sbjct: 81 GQPAPGLEQIDRDDPLGTSQFVQDVRFRRGLESELAQSVMTMEAVEKARVHLSIAKSSSF 140 Query: 165 RK-IGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE 221 G + +ASVM+ + AI +LVA +VPNL V+V+D TG L+A Sbjct: 141 VMMDGEKSSASVMLTLKPGRRLGKEQIAAILNLVAGSVPNLAPSRVSVVDQTGAFLSARV 200 Query: 222 MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD 281 + G + E ++ LA LG+DNFR +V A +N D + + Sbjct: 201 DLDDDFGDGNDAAARFRDETIRSVQDLLAPTLGIDNFRVSVTAGVNNDRVEEMREQFG-- 258 Query: 282 SKVERSIRLSKDAQRSETSQPESAVTVEQNMPH-VSDRKVPLPRSLENTDKKEEQSNYEI 340 + +++ +A R E ++ A+ V ++ + D P++ + Y Sbjct: 259 ----EAPKVTNEATRDEQNRDRIALGVPGSLSNRPVDAPASAPQADGGVQRHATTRQYAY 314 Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400 + H +LE+LS+AVV+N + + + LA I +I+ GI++ Sbjct: 315 DRNVTQIKHSRGRLEKLSVAVVLN-----NAVSPAKGKPWSAEQLAHIEQILRNGLGIDA 369 Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460 +RGD + ++S+DF N+ + L + V + +G LL+ L L Sbjct: 370 QRGDQLVVSSLDF---PAPNAPEPWWRERETLEQGGWYV----AYAIGALLLYLLVARPL 422 Query: 461 RR 462 R Sbjct: 423 LR 424 >gi|254461781|ref|ZP_05075197.1| flagellar M-ring protein FliF [Rhodobacterales bacterium HTCC2083] gi|206678370|gb|EDZ42857.1| flagellar M-ring protein FliF [Rhodobacteraceae bacterium HTCC2083] Length = 567 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 114/578 (19%), Positives = 241/578 (41%), Gaps = 38/578 (6%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++ L F++ + ++A+V LV I LF V P L+ L S+ + Sbjct: 1 MEDLRSFYRQPA--IQRAFPVVAAVFLVAIGLFFYVTLQV--PDRTTLFASLPESEKPAV 56 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 AL D +I ++VP +R+ LA+QGLP+S + GY + G + Sbjct: 57 MEALRANGTDVQIDPITGEMTVPVGDYHNSRLSLASQGLPTSMPD-GYSVL-SDMPMGTS 114 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI--N 181 ++ + ++ E E++ +I +I + +RVH+ +P+ +F + PTASV ++ Sbjct: 115 RSVERMRLKQSQELELSLSIDNIDVVAGSRVHLAIPERSAFARNAQNPTASVFVQLKLGR 174 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQH 239 + +AI HLV+++V NL VTV+D G+LL+ ++ + + L ++ Sbjct: 175 ALSSQQVQAIVHLVSSSVANLPKSAVTVIDQNGRLLSDSVDDPATTLADRQLDYQLKLED 234 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 I L +G N + V +++ +++ + + PD S + + + + S Sbjct: 235 IYRRRIESLLTPVVGPGNVSAQVSLDIDFTRREVTQDMVVPDQSALLSEQSALEEEISAP 294 Query: 300 SQPESAVTVEQNMPHV---------SDRKVPLPRSLENTDKK----EEQSNYEINTKSIA 346 S+ N P S+ + ++ E++ K NYE++ K + Sbjct: 295 SR--GVPGAFTNTPPQMPSFERRVESNGEEGDAQAEESSSAKMRSSNNLRNYEVSRKVSS 352 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI-----DSYLAEINKIVSAATGINSR 401 + L + +AV++ + + + + EI +V++ GIN+R Sbjct: 353 ESSPMALLTGVHVAVLLRELSPIGESVEGGEAPLMQIGIDPEKIEEIKALVASTVGINAR 412 Query: 402 RGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461 RGDT+T++SM ++ ++ + + + + ++ L + LG+ ++ Sbjct: 413 RGDTLTVSSMPYISSESILASMSNREPAQWHEDEWVREMARNMLILAVLAIVTLGI--VK 470 Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI-- 519 L A E IL + +L+ + S + + + Sbjct: 471 PLLTQLFATPSEGAAGKILMSDDDDIIDMDAIEMEAGQSLEYIKAKLKSKRGIISAEMLD 530 Query: 520 --NSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 NSY K + +R+ M++ + R + + + ++++ Sbjct: 531 TANSYDDKIALIRM--MVDDDAGRVSNVFKGMMENDMD 566 >gi|103488413|ref|YP_617974.1| flagellar M-ring protein FliF [Sphingopyxis alaskensis RB2256] gi|98978490|gb|ABF54641.1| flagellar M-ring protein FliF [Sphingopyxis alaskensis RB2256] Length = 551 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 105/540 (19%), Positives = 211/540 (39%), Gaps = 50/540 (9%) Query: 26 ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISV 85 A + I + A F + + L+ L+ +D ++ AL I I +++V Sbjct: 45 AIAMTAAIGIAALAYFTMQTAPQAQLFAGLDDADKAAVAEALQAQGIGHSIDGTTGALTV 104 Query: 86 PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145 + + +ARI LA QGLP ++ + + G + ++ A E +++RTI++ Sbjct: 105 DADKLHQARIALAGQGLPKAAPSG--DSLIAALPMGSSRAIEGEALRSAREADLSRTIET 162 Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLD 203 I + +ARVHI + F + TASVM+ N +AIR LVA++VP ++ Sbjct: 163 IDAVKSARVHIAAAEPSLFVRDDKPATASVMLTLQNGRALGDGQVQAIRFLVASSVPGMN 222 Query: 204 MGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVV 263 V+V+D G LL+ ++ K+ + ++ ++ L LG N+ V Sbjct: 223 ADQVSVIDQRGALLSDTASGSDM--KAFQLQLQVEDRFRRALDTLLGPMLGAGNYTVEVH 280 Query: 264 AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET-----------SQPESAVTVEQNM 312 A+++M Q + + + S ++++ + +QP A T+ Sbjct: 281 ADVDMSESQATRESFPENDRALTSEQITRSVSGTANAPAVGIPGALANQPPQATTITAEG 340 Query: 313 PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372 P + PLP + N + YE+ + T KL R+S+AV +N+G+ Sbjct: 341 PQPAPANAPLPGTESNENAARA---YEVGREISVTHSPQGKLRRVSVAVALNQGK----- 392 Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDIL 432 + + LA+I+ +V A G ++ RGD + I F + + L Sbjct: 393 -----KALTQADLAKIDALVKGAIGYDAARGDMVAINQRPFAPVEDTAPAFYDQGWFLPL 447 Query: 433 SRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTG 492 + ++ AL+ + R + + ++ + +A Sbjct: 448 VKQVGAILAALLAFLFIG----------RPMIRAARQRAAARLEQNQALEETLLAATDRP 497 Query: 493 LMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 + ++ + + ++R N + + + R A ++R + Sbjct: 498 ALA-SGANSREITLEMIEAAPSYEARANL---------VRAFVRQDSARAALVVRHLMQE 547 >gi|56419754|ref|YP_147072.1| flagellar MS-ring protein [Geobacillus kaustophilus HTA426] gi|56379596|dbj|BAD75504.1| flagellar basal-body M-ring protein [Geobacillus kaustophilus HTA426] Length = 528 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 103/537 (19%), Positives = 196/537 (36%), Gaps = 75/537 (13%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 FF LY L + +I L + + ++D G++I VP V ++ LAA+ Sbjct: 43 FFATRTEMVPLYSNLSPQEAGQIKATLDQRGVPAEVADGGTTIKVPKEQVDALKVELAAE 102 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 G+P+S Y F + SFG+T + +++A++ E+A I++I G+ A+V I +P Sbjct: 103 GIPNSGV-IDYSFFGQNASFGMTDNEFNMVKLKAMQTELANLIKTIDGVEDAKVMINLPQ 161 Query: 161 MGSFRKIGA-RPTASVMIRAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F +AS++++ + +A+ HLVA +VPNL ++ +++ + Sbjct: 162 PSVFVSDEKGEASASIVLKTKPGYQFSDEQIKALYHLVAKSVPNLSTDNIVIMNQFFEYY 221 Query: 218 TANEMERNILG----KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI 273 N G I + I+ +I+ + + L +G D +V A+++ ++ Sbjct: 222 DLKNDGENSTGTTFASQQQIKKQIERDIQRQVQQLLGTMMGQDKVVVSVTADVDFTQEKR 281 Query: 274 REIVYDP-----DSKVERSIRLSKDAQRSETSQPESAVTVEQN-MPHVSDRKVPLPRSLE 327 E + P + S++ K+ + P A N +P + + Sbjct: 282 EENLVSPVDEKTKQGIAVSVQRIKETYSGSGAPPGGAAGTGANEVPGYQNANG---ATNG 338 Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE 387 N ++ EE N E+N YK+ L I V+V E + + + Sbjct: 339 NYERTEETINNEVNKIKKQIVESPYKIRDLGIQVMV------EPPDPNDPNSLPPETVND 392 Query: 388 INKIVSAAT--GINSRRGDTIT---------ITSMDFLENQLFNSGTVQVSFMDILSRHF 436 I K++ I+ T+T ++ F F T + Sbjct: 393 IQKLLGTIVRTSIDKSEAQTLTDQDINNRIVVSVQKFNGKPTFTESTPDRPAWWWYAAGA 452 Query: 437 ATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPN 496 ++ AL + ++ E + L PP+S+ P Sbjct: 453 GALLLV----------------ALLLFLWLRRRREDEEEEEEHLFTPPLSTEPDLPEPPE 496 Query: 497 DNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 AL +L + + + FAK+L+ W E Sbjct: 497 TEAALR-------------------------RRQLERLAKEKPDEFAKLLKTWLSEE 528 >gi|18642464|emb|CAD22875.1| basal-body M-ring protein [Erwinia chrysanthemi] Length = 357 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 87/323 (26%), Positives = 149/323 (46%), Gaps = 5/323 (1%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 F + L + L I + +A + P Y LY L D I L Sbjct: 13 KSFGEILNRLRANPKIPLLIASAATIAIVVALSLWARGPDYRVLYTNLNERDGGSIVSEL 72 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + NI +R +++G++I +PS V + R+ LA QGLP + G+EL D+ FG++ F + Sbjct: 73 GKMNIPYRFTESGAAIMIPSDKVYETRLKLAQQGLPKGGA-VGFELLDQE-KFGISQFSE 130 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 +I RALEGE+ART++++ I ARVH+ +P F + P+A+V + Sbjct: 131 QINYQRALEGELARTMETLGPIQNARVHLAIPKPSLFVREQKSPSAAVTVTLQPGRALDD 190 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMN 244 AI +LV+++V L VTV+D TGKLLT N+ R++ L ++ + Sbjct: 191 SQISAITYLVSSSVAGLPADKVTVVDQTGKLLTQNDSSGRDLNAAQLKYANEVESNYQRR 250 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 I L +G N + V A+++ +++ + Y P+ ++ S+ +S+ + Sbjct: 251 IEAILTPVVGAGNVHAQVTAQIDFASREQTDEQYQPNQTPNQAAVRSQQNSQSDQRGGPN 310 Query: 305 AVTVEQNMPHVSDRKVPLPRSLE 327 V + + P S Sbjct: 311 VGGVPGALSNTPTPAPTAPISTP 333 >gi|153953778|ref|YP_001394543.1| flagellar MS-ring protein [Clostridium kluyveri DSM 555] gi|219854394|ref|YP_002471516.1| hypothetical protein CKR_1051 [Clostridium kluyveri NBRC 12016] gi|146346659|gb|EDK33195.1| FliF [Clostridium kluyveri DSM 555] gi|219568118|dbj|BAH06102.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 527 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 115/568 (20%), Positives = 214/568 (37%), Gaps = 59/568 (10%) Query: 4 LDQLLQFFKSGTSLGRTRI----LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 + +L Q FK+ + + + I + A + Y L+ ++ D Sbjct: 1 MGKLSQIFKNLIDKFKKLSKNKKIAFGVITAGIIAAIVFAAISLGKTKYAVLFSNMDSKD 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 ++ + L E +D ++ G+SI VP V R+ + ++ + ++ + G+EL D+ + Sbjct: 61 LSSVYKQLQEDKVDVKVE--GNSILVPEGEVDATRMKVLSE-VEITNGSEGFELLDQ-SK 116 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 G T +I RAL+GE+ RTI+S+ + ARVH+V+PD F K + +ASV ++ Sbjct: 117 LGSTDTEIKINYQRALQGELERTIKSLPEVENARVHLVLPDDTEFVKDTSPGSASVTLKL 176 Query: 180 INP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--------K 229 + +A+ LV+ AV N+ +V V+D LL+ + E K Sbjct: 177 KEGEELSKEQVKALVSLVSGAVKNVPKENVQVIDDNMTLLSKDLFEDEANSEDSTIPAEK 236 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 + + + +E N+ L A G D + V A+L+ D Q YD +S V Sbjct: 237 QQQLKEQYEKNLEKNLLSMLEAVYGKDKVQVKVNADLDFDAVQQNSTTYDNNSVVVSEHT 296 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 +++ Q T+Q S V+ NM + S N E NY + T Sbjct: 297 INETNQGDTTNQTGSP--VDNNMSNTITNNTTGGNSTYN----ETTRNYNVPKVEQKTVK 350 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 ++RL+ +V ++ D+ I + +A G + RGDTI++ Sbjct: 351 APGSVKRLTASVALDGDV-------------DDATTTAIRNLAVSAIGYDGNRGDTISVE 397 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 + F N+ Q D+ A N + I A Sbjct: 398 GLPFDTTAKDNA---QKDMEDMEQAEQAAKRN----------------RLFAVIGGIAAA 438 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD- 528 + G I + + I + ++D + + + + Sbjct: 439 IIATIIGVIIWRRRHAEDELLEDELRPGGIDVVIGDEDTKASEKIKFKPLELEQDTEDVH 498 Query: 529 --LRLLHMIEINEERFAKILRKWARSEI 554 + + ++ A I++ W + Sbjct: 499 IEREIKKYAKDKPDQVADIIKSWLAEDE 526 >gi|297530606|ref|YP_003671881.1| flagellar M-ring protein FliF [Geobacillus sp. C56-T3] gi|297253858|gb|ADI27304.1| flagellar M-ring protein FliF [Geobacillus sp. C56-T3] Length = 528 Score = 293 bits (751), Expect = 4e-77, Method: Composition-based stats. Identities = 102/537 (18%), Positives = 195/537 (36%), Gaps = 75/537 (13%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 FF LY L + +I L + + ++D G++I VP V ++ LAA+ Sbjct: 43 FFATRTEMVPLYSNLSPQEAGQIKATLDQRGVPAEVADGGTTIKVPKEQVDALKVELAAE 102 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 G+P+S Y F + SFG+T + +++A++ E+A I++I G+ A+V I +P Sbjct: 103 GIPNSGV-IDYSFFGQNASFGMTDNEFNMVKLKAMQTELANLIKTIDGVEDAKVMINLPQ 161 Query: 161 MGSFRKIGA-RPTASVMIRAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F +AS++++ + +A+ HLVA +VPNL ++ +++ + Sbjct: 162 PSVFVSDEKGEASASIVLKTKPGYQFSDEQIKALYHLVAKSVPNLSTDNIVIMNQFFEYY 221 Query: 218 TANEMERNILG----KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI 273 N G I + I+ +I+ + + L +G D +V A+++ ++ Sbjct: 222 DLKNDGENSTGTTFASQQQIKKQIERDIQRQVQQLLGTMMGQDKVVVSVTADVDFTQEKR 281 Query: 274 REIVYDP-----DSKVERSIRLSKDAQRSETSQPESAVTVEQN-MPHVSDRKVPLPRSLE 327 E + P + S++ K+ + P A N +P + + Sbjct: 282 EENLVSPVDEKTKQGIAVSVQRIKETYSGSGAPPGGAAGTGANEVPGYQNANG---ATNG 338 Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE 387 N ++ EE N E+N YK+ L I V+V E + + + Sbjct: 339 NYERTEETINNEVNKIKKQIVESPYKIRDLGIQVMV------EPPDPNDPNSLPPETVND 392 Query: 388 INKIVSAAT--GINSRRGDTIT---------ITSMDFLENQLFNSGTVQVSFMDILSRHF 436 I K++ I+ T+T ++ F F + Sbjct: 393 IQKLLGTIVRTSIDKSEAQTLTDQDINNRIVVSVQKFNGKPTFTELAPDRPAWWWYAAGA 452 Query: 437 ATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPN 496 ++ AL + ++ E + L PP+S+ P Sbjct: 453 GALLLV----------------ALLLFLWLRRRREDEEEEEEHLFTPPLSTEPDLPEPPE 496 Query: 497 DNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 AL +L + + + FAK+L+ W E Sbjct: 497 TEAALR-------------------------RRQLERLAKEKPDEFAKLLKTWLSEE 528 >gi|261313942|ref|ZP_05953139.1| flagellar MS-ring protein [Brucella pinnipedialis M163/99/10] gi|261302968|gb|EEY06465.1| flagellar MS-ring protein [Brucella pinnipedialis M163/99/10] Length = 335 Score = 293 bits (750), Expect = 5e-77, Method: Composition-based stats. Identities = 146/327 (44%), Positives = 209/327 (63%), Gaps = 3/327 (0%) Query: 4 LDQLLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 QL++ K LG +++ L V + + ++ P Y+ LYV L DVNR Sbjct: 10 FQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVNR 69 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S GL Sbjct: 70 MGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGL 128 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 TSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 129 TSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGG 188 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEI 241 +SA++IR LVAAAVP+LD VTVLD+ G LL +A E + S+ Q + + Sbjct: 189 FSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASHV 248 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S ++ Sbjct: 249 DDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNNR 308 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLEN 328 ++A VEQN+P + S E Sbjct: 309 NDNATGVEQNIPQEQIQNRNGESSTEK 335 >gi|254706488|ref|ZP_05168316.1| flagellar MS-ring protein [Brucella pinnipedialis M163/99/10] Length = 330 Score = 293 bits (750), Expect = 5e-77, Method: Composition-based stats. Identities = 146/327 (44%), Positives = 209/327 (63%), Gaps = 3/327 (0%) Query: 4 LDQLLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 QL++ K LG +++ L V + + ++ P Y+ LYV L DVNR Sbjct: 5 FQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVNR 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S GL Sbjct: 65 MGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGL 123 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 TSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 124 TSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGG 183 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEI 241 +SA++IR LVAAAVP+LD VTVLD+ G LL +A E + S+ Q + + Sbjct: 184 FSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASHV 243 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S ++ Sbjct: 244 DDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNNR 303 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLEN 328 ++A VEQN+P + S E Sbjct: 304 NDNATGVEQNIPQEQIQNRNGESSTEK 330 >gi|261419419|ref|YP_003253101.1| flagellar MS-ring protein [Geobacillus sp. Y412MC61] gi|319766234|ref|YP_004131735.1| flagellar M-ring protein FliF [Geobacillus sp. Y412MC52] gi|261375876|gb|ACX78619.1| flagellar M-ring protein FliF [Geobacillus sp. Y412MC61] gi|317111100|gb|ADU93592.1| flagellar M-ring protein FliF [Geobacillus sp. Y412MC52] Length = 528 Score = 293 bits (750), Expect = 6e-77, Method: Composition-based stats. Identities = 102/537 (18%), Positives = 195/537 (36%), Gaps = 75/537 (13%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 FF LY L + +I L + + ++D G++I VP V ++ LAA+ Sbjct: 43 FFATRTEMVPLYSNLSPQEAGQIKATLDQRGVPAEVADGGTTIKVPKEQVDALKVELAAE 102 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 G+P+S Y F + SFG+T + +++A++ E+A I++I G+ A+V I +P Sbjct: 103 GIPNSGV-IDYSFFGQNASFGMTDNEFNMVKLKAMQTELANLIKTIDGVEDAKVMINLPQ 161 Query: 161 MGSFRKIGA-RPTASVMIRAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F +AS++++ + +A+ HLVA +VPNL ++ +++ + Sbjct: 162 PSVFVSDEKGEASASIVLKTKPGYQFSDEQIKALYHLVAKSVPNLSTDNIVIMNQFFEYY 221 Query: 218 TANEMERNILG----KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI 273 N G I + I+ +I+ + + L +G D +V A+++ ++ Sbjct: 222 DLKNDGENSTGTTFASQQQIKKQIERDIQRQVQQLLGTMMGQDKVVVSVTADVDFTQEKR 281 Query: 274 REIVYDP-----DSKVERSIRLSKDAQRSETSQPESAVTVEQN-MPHVSDRKVPLPRSLE 327 E + P + S++ K+ + P A N +P + + Sbjct: 282 EENLVSPVDEKTKQGIAVSVQRIKETYSGSGAPPGGAAGTGANEVPGYQNANG---ATNG 338 Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE 387 N ++ EE N E+N YK+ L I V+V E + + + Sbjct: 339 NYERTEETINNEVNKIKKQIVESPYKIRDLGIQVMV------EPPDPNDPNSLPPETVND 392 Query: 388 INKIVSAAT--GINSRRGDTIT---------ITSMDFLENQLFNSGTVQVSFMDILSRHF 436 I K++ I+ T+T ++ F F + Sbjct: 393 IQKLLGTIVRTSIDKSEAQTLTDQDINNRIVVSVQKFNGKPTFTELAPDRPAWWWYASGA 452 Query: 437 ATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPN 496 ++ AL + ++ E + L PP+S+ P Sbjct: 453 GALLLV----------------ALLLFLWLRRRREDEEEEEEHLFTPPLSTEPDLPEPPE 496 Query: 497 DNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 AL +L + + + FAK+L+ W E Sbjct: 497 TEAALR-------------------------RRQLERLAKEKPDEFAKLLKTWLSEE 528 >gi|304316908|ref|YP_003852053.1| flagellar M-ring protein FliF [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778410|gb|ADL68969.1| flagellar M-ring protein FliF [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 505 Score = 293 bits (750), Expect = 6e-77, Method: Composition-based stats. Identities = 111/562 (19%), Positives = 215/562 (38%), Gaps = 73/562 (12%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 I Q+ F+ + +I I++ +++ + +N P+Y+ LY L V D Sbjct: 7 NIRSQINNFWNKFDKKQKIQIGIISLLLISS---IALLVYIINRPNYEVLYSDLSVKDAG 63 Query: 62 RISVALS-EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK-VNS 119 + L E I ++I NGS+I VP+ +ARI LA +G+P G+ D NS Sbjct: 64 AVVDKLKNELKIPYKIEGNGSTILVPAQYKDEARIQLATEGIPQ----DGFSFSDAMNNS 119 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARPTASVMI 177 T ++ + ++ EI T+++I G+ A+V+IV+PD +F TA+VM+ Sbjct: 120 LATTDQERKQKYIYFVQNEIQNTLKAIDGVQDAKVNIVVPDENNFVLSNNDNSSTAAVML 179 Query: 178 RAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIV 234 + + I + V+ +V L VT++D GK+L N+ + ++ Sbjct: 180 QLKPGVTLTNQQINGITNFVSKSVEGLSPDKVTIIDGNGKVLVAQNDNSLDGASSQYALQ 239 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLS 291 +Q++++ NI L G N LN D Q ++ + P ++ + RS + Sbjct: 240 MKVQNDLQNNIQSLLEQVFGPGNVIVRASVNLNFDKQVQDKVEWQPVIDNNGIIRSTQTI 299 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 K+ ++ + N P S N K + NYEIN T Sbjct: 300 KEIANGSSN--GAPAGTATNNPPGSTTYTTQNNGNSNYSKTDTTINYEINQIKTTLTSAQ 357 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 K++ +S++VVVN L + ++ +VS A G + ++++ + Sbjct: 358 GKIQNISLSVVVNNNNL------------SPTMKQQLTDLVSNAAG---GKNVSVSVMGI 402 Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 F + L Q + + + + Sbjct: 403 KFNTDLLNQMKNTQKQTFPYVWLIILGALLLAGGVFYAM--------------------- 441 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 + K ++ + A++T + LD +++ + ++ Sbjct: 442 -KKKNKELIPATNLEEAMSTEEPGKEIEELDVTSE-----------------KDEKMKQI 483 Query: 532 LHMIEINEERFAKILRKWARSE 553 I+ + A+++R W E Sbjct: 484 EKFIKQKPDIVAQLIRTWLNEE 505 >gi|304321127|ref|YP_003854770.1| flagellar M-ring protein FliF [Parvularcula bermudensis HTCC2503] gi|303300029|gb|ADM09628.1| flagellar M-ring protein FliF [Parvularcula bermudensis HTCC2503] Length = 485 Score = 291 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 110/470 (23%), Positives = 193/470 (41%), Gaps = 8/470 (1%) Query: 36 FMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARI 95 +A F L+ L + I L E + + I +GS+I VP + R+ Sbjct: 14 LLAMVFMAGGRTDALLFSGLSPAASGDIIGKLDEMAVPYTI--DGSAIYVPEGERDRLRL 71 Query: 96 HLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVH 155 LA G+P + +GYE+ D +N F TS M + RA EGE+ RTI +I + AARVH Sbjct: 72 ELARLGMPPAGG-AGYEILDDLNGFSTTSDMFDAAYWRAKEGELTRTILAIPTVTAARVH 130 Query: 156 IVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 + + +FR+ +ASV + A A++I++L A AVP L V V+D+ Sbjct: 131 LGVTRQSAFRRARLDKSASVTVEASGGLSKSQAQSIQYLTALAVPELRPESVAVIDTARG 190 Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 ++ + I + + + + L A +G N R +V +++ + +E Sbjct: 191 VIAGPGATGDESPMGDEIDR--EDRLASRLTHLLEAHVGPGNARVSVAMDIDRQSIAQKE 248 Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE-NTDKKEE 334 V DPDS+ S +S+++ S + VT+ N+P + P +++E Sbjct: 249 RVIDPDSRQIVSRSISEESDAE--SDADIPVTIASNLPDGDAAEDPEEAGTRLVKRRRDE 306 Query: 335 QSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSA 394 + Y + RLS+AV++N+ G + + + + +V+ Sbjct: 307 EVTYTGTEIERVIETAAGTVRRLSVAVLLNERYTVNEEGETVPAPRSPEEVEALETLVAN 366 Query: 395 ATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTF 454 A GI RGD + I + F + ++ R +++ L+ + F Sbjct: 367 AAGIEDERGDRLAIRVLPFEGEEPQLVTAPGFVEAHVMPRAVDIAQFSVLALLVASIAFF 426 Query: 455 LGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSS 504 + AL A+ E K + T P+D A+ S Sbjct: 427 VLRPALSPKTPFAQAEIAEGEDKLENLDAAEVLTMLTEENPDDAAAILDS 476 >gi|312621568|ref|YP_004023181.1| flagellar m-ring protein flif [Caldicellulosiruptor kronotskyensis 2002] gi|312202035|gb|ADQ45362.1| flagellar M-ring protein FliF [Caldicellulosiruptor kronotskyensis 2002] Length = 560 Score = 289 bits (740), Expect = 8e-76, Method: Composition-based stats. Identities = 116/584 (19%), Positives = 230/584 (39%), Gaps = 63/584 (10%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 D L + +SL +++ ++ + ++ + A + PHY ++ L+ + I Sbjct: 7 DYLKNIKEKWSSLSKSQKIMFVVSSSIILLSVIVAIYITTRPHYVTIFSGLDPKEAAEIQ 66 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 LS+ ID + ++ G++I V V +A++ A G P +SS + + +S T Sbjct: 67 NILSDQKIDSKAANGGTTILVRDKDVDRAKMAAAQAGYPKNSSITFEDALKLSSSMTATE 126 Query: 125 FMQEITRVRALEGEIARTIQSI-SGIVAARVHIVMPDMGSFR--KIGARPTASVMIRAIN 181 + T ++ E EI + ++ + I A V++ +P+ +F +PTASV + Sbjct: 127 TDKRRTFIKLKESEIQQALKQMSDYIEDAVVNLSIPEDYTFALKSEAEKPTASVKLTLKK 186 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQAIQH 239 E I+ VAA+V L +V ++D+ G L+ N + + K L + A ++ Sbjct: 187 SLSSDQIEGIQRFVAASVEGLLPENVVIIDNKGNYLSDNSSDTTEGLSSKQLQLKIATKN 246 Query: 240 EIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQ 295 EIE I + L +++ ++ + +V ++N D Q+I E Y P DS + S + +K+ Sbjct: 247 EIEKKIKELLGSYVSSPEDVKVSVNLDMNFDMQKISETKYSPVLEDSGIVVSKKTTKEEA 306 Query: 296 RSETSQPESAVTVEQNMPHVSDR-KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 +S S + N + + + K +E NY+ N K I T + Sbjct: 307 QSTNSSSSGVPGTDTNPTQNAPQYPITSQGGQSTYTKTDETVNYQNNEKKIETIKAPGTI 366 Query: 355 --ERLSIAVVV-NKGRLTEVLGRSADQGK--------------------IDSYLAEINKI 391 ++ SIAVV+ T+ ++Q K + I + Sbjct: 367 NYDKSSIAVVLYRYVTYTQEDFEKSEQAKNMSWAQFKLQNQNNKRSFLTDQKEVETIINL 426 Query: 392 VSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLL 451 + +ATGI +T+ G +F+D R ++ + + LL Sbjct: 427 IKSATGI-----QNVTV------------EGYEIPTFVDKPQRQIP--VDYIYVALAFLL 467 Query: 452 VTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSH 511 + L + + +K E+ G L L + + Sbjct: 468 LMVFAASVLIK-ASRSKSKTVELAGVGPLEISEGKPTAEEILHEAEKRKEPEVEEI---- 522 Query: 512 SRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + Q + ++ +++ E A++LR W + E Sbjct: 523 ------NVEEFGVSQYEKQIDKLLKEKPEIVAQLLRNWLNEDWE 560 >gi|295696113|ref|YP_003589351.1| flagellar M-ring protein FliF [Bacillus tusciae DSM 2912] gi|295411715|gb|ADG06207.1| flagellar M-ring protein FliF [Bacillus tusciae DSM 2912] Length = 506 Score = 289 bits (739), Expect = 9e-76, Method: Composition-based stats. Identities = 113/558 (20%), Positives = 191/558 (34%), Gaps = 71/558 (12%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 L Q L R L + ++L +A ++ +P Y +Y L+ ++ Sbjct: 9 LEQARTMWRGLDPKRRRWLIAGAAAGLVLLVALSWYALAPRYVVIYQNLDAKAAGEVTNK 68 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L E I +R S G + VP +AR+ LA GLP S +LF N G++ Sbjct: 69 LDELKIPYRTS--GGQVMVPEQDADRARMQLAIAGLPKSGYVGYEDLFGNTNIGGMSDNE 126 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA-RPTASVMIRAINPSVY 185 + + ALEG +A TI+ I G+ +VH+VMP+ F + + ASV ++ + Sbjct: 127 FNVKSLMALEGSLAGTIRQIDGVEDVQVHLVMPEQHMFVEQPVGQAKASVFLKIAPGAQL 186 Query: 186 --KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIVQAIQHE 240 I+ LV+ +V L+ DV V+D G L E + + I + + Sbjct: 187 GPDQVAGIQQLVSHSVKGLNATDVAVVDQNGVRLDHPEDAGTAVSNADRQILIQKQYEQL 246 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQRS 297 I + AL LG N A LN D + + P + V S++ S + Sbjct: 247 ISDRLQSALGRILGPGNVVVLANARLNFDQVKSTQSDVRPVVGQNGVPVSVQKSTKSATG 306 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 M + D+ ++ NYE++ + L+ L Sbjct: 307 TGVGGVPGTATAGGMATGAPPTYQGATGNGTYDESQQTINYEVSKIVTERVGQPFTLQDL 366 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI--NSRRGDTITITSMDFLE 415 +++V+VN + +I V A G + + +T+T M F Sbjct: 367 TVSVLVNGQP-------------TPLQVQQIRNYVLTAVGYPNDGTQDQKVTVTGMPFQT 413 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 Q QV++ AL+R + E G Sbjct: 414 AQ----SAPQVAWWARYGWAIGAFAAVAA--------AIGIWFALKR------RRMAEEG 455 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 + P P S +P ++Q + + Sbjct: 456 LPEPVIPAPRPSLFEESELPE---------------------------AEQRRREVEQLA 488 Query: 536 EINEERFAKILRKWARSE 553 + FA++LR W E Sbjct: 489 RTRPQEFAELLRTWLAEE 506 >gi|302874589|ref|YP_003843222.1| flagellar M-ring protein FliF [Clostridium cellulovorans 743B] gi|307690800|ref|ZP_07633246.1| flagellar MS-ring protein [Clostridium cellulovorans 743B] gi|302577446|gb|ADL51458.1| flagellar M-ring protein FliF [Clostridium cellulovorans 743B] Length = 522 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 109/561 (19%), Positives = 222/561 (39%), Gaps = 55/561 (9%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 ++ ++ F + + R + + + V I+ +A Y L+ L+ +D Sbjct: 7 LIAKIKGIFNG---MSKVRKISIGLITAVVIVAIVALIITTGKTKYTALFNNLDATDSQN 63 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L E I +++ ++ ++I VP VG+ R+ AA S + G E+FD + G+ Sbjct: 64 IVTKLKEEGIPYKVENSTNTIMVPDEQVGQLRLQYAAD---IKSGSIGLEIFDTSSQLGI 120 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 + + RAL+GEI RT++S + A+V+IV+P+ +F K A + S+ ++ Sbjct: 121 SDAEFNVKYQRALQGEIERTVKSFEQVEDAKVNIVLPEDSTFVKDTAPASVSITLKLKPG 180 Query: 183 --SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT------ANEMERNILGKSLSIV 234 + +AI LV+ +V NL ++ ++D+ +LLT + + L Sbjct: 181 TELSEEQVKAIVSLVSTSVKNLPKENIQIVDNNMRLLTDKLFKGSEDESSVTASTQLEEK 240 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 + +E I L G ++ V A LN D+ D + S +S Sbjct: 241 MKFEDYLEEKILSQLEPMYGQGKVKANVNAVLNFDSVSTETTTVDKTPPIV-SQNIS--I 297 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN-YK 353 S+ + V+ N+ +V + + N + +NY + K I + Sbjct: 298 NASDANNTTGNSPVDNNLSNVINEYMQNG----NISSANQTTNYSTDGKVIERKQNALGN 353 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 + +S AV ++ LT + LA++ K+V+ G + D + + +F Sbjct: 354 VTAVSAAVAIDNAELT------------ERQLADVKKLVNKTIGQAKQNEDETIVMAYEF 401 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 ++Q S ++ + A L ++G +GL A + +KK E Sbjct: 402 NPE---LKASIQKSLEEMEAAQKAEAQKKLYTMIGLGAAVVIGLVAFALVLRKRRSKKEE 458 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 + ++ +++ L+ + + + L S D + Sbjct: 459 LE-----------------MIETEDVVLEEMPIENEINFKPLDLEQKSQKDHIEDE-IRK 500 Query: 534 MIEINEERFAKILRKWARSEI 554 + ++ A+I++ W S+ Sbjct: 501 YAQNKPDQVAEIIKSWLVSDE 521 >gi|269796398|ref|YP_003315853.1| flagellar basal-body M-ring protein/flagellar hook-basal body protein FliF [Sanguibacter keddieii DSM 10542] gi|269098583|gb|ACZ23019.1| flagellar basal-body M-ring protein/flagellar hook-basal body protein FliF [Sanguibacter keddieii DSM 10542] Length = 530 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 104/517 (20%), Positives = 214/517 (41%), Gaps = 36/517 (6%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 + + P + LY L +D + I L+ + +++++ GS++ VP+ V R+ +AA Sbjct: 42 SMWFSRPQFSPLYTDLAPADASAIVDQLTAQGVKYQLTNGGSTVLVPTESVYDMRLKVAA 101 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 G+ S S++ GY L D + F Q++T RALEGE+ +T+ S+ G+ A V + MP Sbjct: 102 SGM-SPSADGGYSLLD-DMGMTSSEFQQDVTYKRALEGEMGKTVSSMQGVELATVKLAMP 159 Query: 160 DMGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F PTASV ++ + ++I +LV+A+V + DV V+DS+G +L Sbjct: 160 AESVFVDQATDPTASVFVKTRSGVTLTDDQVQSIVNLVSASVEGMKATDVAVIDSSGAVL 219 Query: 218 TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 +A G + + + +I L +GV V A+L+ D + + Sbjct: 220 SAVGTGLAGSGGN-KQTVEYEQRVAQSIQAMLEPIVGVGKAVVTVTADLDYDATERTQES 278 Query: 278 YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSN 337 + V + + + P + V N+ +VP + + + ++N Sbjct: 279 FSSAEGVLPLTERTTTEEFAGGGNPATGVLGPDNI------QVPNGTADGSYTNETSEAN 332 Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG 397 ++ + T + R S V +A++ +VS+A+G Sbjct: 333 NAVDKLTEHTVTAPGTVRRQS------------VAVAVDAAAAAAVDMAQLQAMVSSASG 380 Query: 398 INSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA--TVINALVFLVGTLLVTFL 455 + RGD +T++ M F + ++ + + + + + ++ L + L Sbjct: 381 FDEARGDVVTVSQMPFDTSAAESAQAALDAAAEAEAAAASSRMMQTYVIAGAALLALVLL 440 Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL 515 + RR N +D ++ G + P+ A+ + + L + + ++ Sbjct: 441 AIFLARRGRNREDPRESLDLGDLPIMDEPL--ALEPADLDTQLLELPEVPELPSAEQVSI 498 Query: 516 QSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 + + N + +++ E+ A++LR W Sbjct: 499 ERKRND---------VALLVDEQPEQVAELLRGWMDE 526 >gi|325273535|ref|ZP_08139767.1| flagellar MS-ring protein [Pseudomonas sp. TJI-51] gi|324101328|gb|EGB98942.1| flagellar MS-ring protein [Pseudomonas sp. TJI-51] Length = 424 Score = 286 bits (733), Expect = 5e-75, Method: Composition-based stats. Identities = 89/446 (19%), Positives = 180/446 (40%), Gaps = 65/446 (14%) Query: 152 ARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTV 209 ARVH+ +P F + +P+ASV++ + AI +LVA +VP LD VTV Sbjct: 1 ARVHLAIPKSSVFVRDERKPSASVLVELYPGRALEPGQVMAIVNLVATSVPELDKSQVTV 60 Query: 210 LDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELN 267 +D G LL+ + + GK + ++ + ++ L LG D +++ V A+L+ Sbjct: 61 VDQKGNLLSEQIQDSALTQAGKQFDYSRRVESMLTQRVHNILQPVLGNDRYKAEVSADLD 120 Query: 268 MDTQQIREIVYDPDSKVERSIRLSKDAQRSE----------TSQPESAVTVEQ------- 310 + ++PD RS + + + S ++QP A T Q Sbjct: 121 FSAVESTSEQFNPDQPALRSEQSVDEQRASSQGPQGVPGALSNQPPGAATAPQTTGGAAT 180 Query: 311 --------------NMPHVSDRKVPLP--RSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 N + D P + +++ N+E++ T ++ Sbjct: 181 PAAAIQPGQPLVDANGQQIMDPATGQPMLAPYPSDKRQQSTKNFELDRSISHTRQQQGRM 240 Query: 355 ERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 RLS+AVVV ++ ++ G + LA ++V A G ++ RGD++T+ ++ F Sbjct: 241 TRLSVAVVVDDQVKIDPATGDATRAPWGSEDLARFTRLVQDAVGFDASRGDSVTVINVPF 300 Query: 414 LENQLFNSGTV----QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 ++ + Q F DI+ + ++G + + L LR + N Sbjct: 301 AADRGEEIADIAFYQQPWFWDIVKQ-----------VLGVVFILVLVFGVLRPVLNNITG 349 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF-SHSRNLQSRINSYVSKQSD 528 + S + + G + ND ++L + S S ++++N+ Sbjct: 350 GGKQAAPDSDMELGGMMG--LDGELANDRVSLGGPTSILLPSPSEGYEAQLNA------- 400 Query: 529 LRLLHMIEINEERFAKILRKWARSEI 554 + ++ + R A+++++W ++ Sbjct: 401 --IKGLVAEDPGRVAQVVKEWINADE 424 >gi|312135854|ref|YP_004003192.1| flagellar m-ring protein flif [Caldicellulosiruptor owensensis OL] gi|311775905|gb|ADQ05392.1| flagellar M-ring protein FliF [Caldicellulosiruptor owensensis OL] Length = 560 Score = 286 bits (732), Expect = 6e-75, Method: Composition-based stats. Identities = 120/587 (20%), Positives = 236/587 (40%), Gaps = 70/587 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L + + + + ++I +S+IL+ +++ + + PHY ++ L+ + I Sbjct: 9 LKNIKEKWDKFAKSQKIMLVISSSIILLSVIIAL---YITTRPHYVTIFSGLDPKEAAEI 65 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L+E ID ++++ G++I V + V +A++ A G P +SS + + +S T Sbjct: 66 QNILNEQKIDSKVANGGTTILVRDTDVDRAKMAAAQAGYPKNSSITFEDALKLSSSMTAT 125 Query: 124 SFMQEITRVRALEGEIARTIQSI-SGIVAARVHIVMPDMGSFR--KIGARPTASVMIRAI 180 + T ++ E EI ++ + I A V++ +P+ +F +PTASV + Sbjct: 126 ESDKRRTFIKLKESEIQEALKQMSDYIEDAVVNLSVPEDYTFALKDEATKPTASVKLTLK 185 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQAIQ 238 E I+ VAA+V L +V ++D+ G L++N + + K L I A + Sbjct: 186 KSLGSNQIEGIQRFVAASVEGLLPENVVIIDNKGNYLSSNSSDTTEGLSSKQLQIKIATK 245 Query: 239 HEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDA 294 +EIE + + L +++ ++ + +V ++N D Q+I E Y P DS + S + +K+ Sbjct: 246 NEIEKKVKELLGSYVSSPEDVKVSVNLDMNFDMQKISETKYFPVLEDSGIVVSKKTTKEE 305 Query: 295 QRSETSQPESAVTVEQNMPHVSDR-KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 +S S + N + + + K +E NY+ N K I T Sbjct: 306 AQSTNSSSSGVPGTDTNPTQNTTQYPISSQGGQSTYTKTDETVNYQNNEKKIETIKAPGT 365 Query: 354 L--ERLSIAVVV-NKGRLTEVLGRSADQGK--------------------IDSYLAEINK 390 + +R SIAVV+ T+ +DQ K + I Sbjct: 366 INYDRSSIAVVLYRYVTYTQEDFEKSDQAKNMNWAQFKLQNQNNKRSFLTDQKEIETIVN 425 Query: 391 IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA--TVINALVFLVG 448 ++ +ATGI +T+ G +F+D R + AL FL+ Sbjct: 426 LIKSATGI-----QNVTV------------EGYEVPTFVDRPQRQIPVDYIYVALAFLLL 468 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 + L + A + ++ E+ G + L + Sbjct: 469 MVFAASLLIKA-----SKSKPRRLELAGVGPVEISEEKPVAEEILQEAEK---------- 513 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + I + Q + ++ +++ E A++LR W + E Sbjct: 514 RKEAEVEEINIEEFGVSQYEKQIDKLLKEKPEIVAQLLRNWLNEDWE 560 >gi|82523970|emb|CAI78781.1| flagellar biosynthesis/type III secretory pathway lipoprotein [uncultured epsilon proteobacterium] Length = 572 Score = 286 bits (732), Expect = 6e-75, Method: Composition-based stats. Identities = 105/460 (22%), Positives = 201/460 (43%), Gaps = 20/460 (4%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVIL-VPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + QL+ + T R I I+ I + + ++ L+ L +D Sbjct: 6 LFSQLVVLYTKLTKQQRIIIAAAIIGIVGFLIFMVVYTSKNTKESKFEVLFDSLSSADAA 65 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 ++ L + I++ I DN + I VP +V K RI +AA G+P S G+ELFD FG Sbjct: 66 KVVEQLEKDGIEYEIEDN-NVIRVPRDVVYKQRISIAALGIPKDSG-VGFELFD-TQEFG 122 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 TSF Q I +RALEGE++RTI +++ I +A V + +P F + PTASVMI + Sbjct: 123 ATSFDQNIKYLRALEGELSRTINALAPIESASVSLALPKETLFVEKSVSPTASVMITLVE 182 Query: 182 PSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLSIVQA 236 K I++LVA+AV L +V +++S G+ L + + + Sbjct: 183 GRNLSSKQVRGIKNLVASAVTKLTPANVMLVNSDGETLGDEDEMAQMGELSSVQQKYKEK 242 Query: 237 IQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 + + + I + L+ F+ G + V E + + +DP++ V RS + S++ + Sbjct: 243 EEKKRQKKIIQVLSPFVGGTKKVVAQVTIEFDFSIKNSTSETFDPEN-VVRSEQNSEEKR 301 Query: 296 RSETSQPESAVTVEQNMPHVSD-RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 E P V + ++ + + ++ E +K +NYE+ T ++ Sbjct: 302 --EGGAPAEVGGVPGTVSNIGPVQGLKSNQTSEKYEKSTGTTNYEVGKTVSTTKSQFARI 359 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQ------GKIDSYLAEINKIVSAATGINSRRGDTITI 408 R++ AV+V+ ++ ++ + I+ + ++ GI+ RGD +++ Sbjct: 360 NRITAAVIVDGKYKNKLNADGVPTEELEYLPLDETDIQAISSLAGSSIGIDEARGDQLSV 419 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++ F +++ + + A ++ Sbjct: 420 KNLQFKRDKVSVGEDGVSQALVFSETYLAPFSGLFKYIFV 459 >gi|312126819|ref|YP_003991693.1| flagellar m-ring protein flif [Caldicellulosiruptor hydrothermalis 108] gi|311776838|gb|ADQ06324.1| flagellar M-ring protein FliF [Caldicellulosiruptor hydrothermalis 108] Length = 560 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 118/584 (20%), Positives = 231/584 (39%), Gaps = 63/584 (10%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 D L + +SL +++ ++L + ++ +AA + PHY ++ L+ + I Sbjct: 7 DFLKNIKEKWSSLSKSQKIMLVVSSSIILLSVIAAIYITTRPHYVTIFSGLDPKEAAEIQ 66 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 LSE ID + ++ G++I V + V +A++ A G P +SS + + +S T Sbjct: 67 NILSEQKIDSKAANGGTTILVRDTDVDRAKMAAAQAGYPKNSSITFEDALKLSSSMTATE 126 Query: 125 FMQEITRVRALEGEIARTIQSI-SGIVAARVHIVMPDMGSFR--KIGARPTASVMIRAIN 181 + T ++ E EI + ++ + I A V++ +P+ +F +PTASV + Sbjct: 127 ADKRRTFIKLKESEIQQALKQMSDYIEDAVVNLSIPEDYTFALKSEATKPTASVKLTLKK 186 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQAIQH 239 E I+ VAA+V L +V ++D+ G L++N + + K L + A ++ Sbjct: 187 SLSSDQIEGIQRFVAASVEGLLPENVVIIDNKGNYLSSNSSDTTEGLSSKQLQLKIATKN 246 Query: 240 EIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQ 295 EIE + + L +++ ++ + +V ++N D Q+I E Y P DS + S + +K+ Sbjct: 247 EIEKKVKELLGSYVSSPEDVKVSVNLDMNFDMQKISETKYSPVLEDSGIVVSKKTTKEEA 306 Query: 296 RSETSQPESAVTVEQNMPHVSDR-KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 +S S + N + + + K +E NY+ N K I T + Sbjct: 307 QSTNSSSSGVPGTDTNPTQNTTQYPISSQGGQSTYTKTDETVNYQNNEKKIETIKAPGTI 366 Query: 355 --ERLSIAVVV-NKGRLTEVLGRSADQGK--------------------IDSYLAEINKI 391 ++ SIAVV+ T+ +DQ K + I + Sbjct: 367 NYDKSSIAVVLYRYVTYTQEDFEKSDQAKNMSWAQFKLQNQNNKRSFLTDQKEVETIVNL 426 Query: 392 VSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLL 451 + +ATGI +T+ G +F+D R + L+ Sbjct: 427 IKSATGI-----QNVTV------------EGYEIPTFVDKPQRQIPVDYIYVALAFLLLM 469 Query: 452 VTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSH 511 V L + VG I P++ + + Sbjct: 470 VFAASLLIKASKSKPRTVELAGVGPVEISEEKPVAEEILQ-------------EAEKRKK 516 Query: 512 SRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + + + Q + ++ +++ E A++LR W + E Sbjct: 517 AEVEEINVEEFGVSQYEKQIDKLLKEKPEIVAQLLRNWLNEDWE 560 >gi|330899425|gb|EGH30844.1| flagellar MS-ring protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 319 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 81/296 (27%), Positives = 142/296 (47%), Gaps = 4/296 (1%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 + F ++ + + R + L + + + A + P Y LY L D +I L Sbjct: 24 MSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + ANI++ + N ++ V S V +ARI LA G+ + +N G+E+ DK G + FM+ Sbjct: 84 TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 R LEGE+ARTI +++ + ARVH+ +P F + +P+ASV++ + Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEM 243 AI +LVA +VP L +TV+D G LL+ A E + GK + ++ + Sbjct: 204 SQVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 + L LG D +++ V A ++ + ++PD RS + + + S + Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNEQRSSSS 319 >gi|312876496|ref|ZP_07736479.1| flagellar M-ring protein FliF [Caldicellulosiruptor lactoaceticus 6A] gi|311796707|gb|EFR13053.1| flagellar M-ring protein FliF [Caldicellulosiruptor lactoaceticus 6A] Length = 560 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 126/586 (21%), Positives = 235/586 (40%), Gaps = 67/586 (11%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 D L + +SL +++ ++L + ++ +AA + PHY ++ L+ + I Sbjct: 7 DFLKNIKEKWSSLSKSQKIMLVVSSSIILLSVIAAIYITTRPHYVTIFSGLDPKEAAEIQ 66 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 LSE ID + ++ G++I V + V +A++ A G P +SS + + +S T Sbjct: 67 NILSEQKIDSKAANGGTTILVRDTDVDRAKMAAAQAGYPKNSSITFEDALKLSSSMTATE 126 Query: 125 FMQEITRVRALEGEIARTIQSI-SGIVAARVHIVMPDMGSFR--KIGARPTASVMIRAIN 181 + T ++ E EI ++ + I A V++ +P+ +F +PTASV + Sbjct: 127 ADKRRTFIKLKESEIQEALKQMSDYIEDAVVNLSVPEDYTFALKSEATKPTASVKLTLKK 186 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQAIQH 239 E I+ VAA+V L +V ++D+ G L+ N + + K L + A ++ Sbjct: 187 SLSSDQIEGIQRFVAASVEGLLPENVVIIDNKGNYLSENSSDSTEGLSSKQLQLKIATKN 246 Query: 240 EIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQ 295 EIE + + L +++ ++ + +V ++N D Q+I E Y P DS + S + +K+ Sbjct: 247 EIEKKVKELLGSYVSSPEDVKVSVNLDMNFDMQKISETKYSPVLEDSGIVVSKKTTKEEA 306 Query: 296 RSETSQPESAVTVEQNMPHVSDR-KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 +S S + N + + + K +E NY+ N K I T + Sbjct: 307 QSTNSSSSGVPGTDTNPTQNTPQYPISSQGGQSTYTKTDETVNYQNNEKKIETIKAPGTI 366 Query: 355 --ERLSIAVVV-NKGRLTEVLGRSADQGKI--------------------DSYLAEINKI 391 + SIAVV+ T+ +DQ K + I + Sbjct: 367 NYDNSSIAVVLYRYVTYTQEDFEKSDQAKTMSWAQFKLQNQNNKRSFLTDQKEVETIVNL 426 Query: 392 VSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA--TVINALVFLVGT 449 + +ATGI +T+ G +F+D R + AL FL+ Sbjct: 427 IKSATGI-----QNVTV------------EGYEVPTFVDKPQRQIPVDYIYIALAFLLLM 469 Query: 450 LLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF 509 L + A R + VG I P + + G+ ++ N + F Sbjct: 470 AFAASLLIKATR--SKPRRLELAGVGPVEISEEKPTAEEILQGIEKKKEPEVEEINVEEF 527 Query: 510 SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 S Q + ++ +++ E A++LR W + E Sbjct: 528 GVS-------------QYEKQIDKLLKEKPEIVAQLLRNWLNEDWE 560 >gi|114800445|ref|YP_758973.1| flagellar MS-ring protein [Hyphomonas neptunium ATCC 15444] gi|114740619|gb|ABI78744.1| flagellar M-ring protein FliF [Hyphomonas neptunium ATCC 15444] Length = 528 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 130/556 (23%), Positives = 218/556 (39%), Gaps = 40/556 (7%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 ++F + +L +R L+LA+ + I LY LE + I L Sbjct: 1 MKFLDTLKALPVSRQLMLAAAVAGMIAAMSFLVQGATRDPMTLLYSGLEPAHAGDIIKEL 60 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 ++ + I G +I VP R LA QGLP S GYEL D+VN F +TS M Sbjct: 61 EQSGTPYEIK--GEAIFVPQGKRDAIRFTLAQQGLPRPSVQ-GYELLDEVNGFSVTSEMY 117 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187 RA EGE+ RTI +I G+ +ARVHI F + TASV + Sbjct: 118 NAAYWRAKEGELTRTILAIPGVSSARVHIGANLRSGFSRSQPNQTASVTLTTARDMTAGQ 177 Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINK 247 AEAI+++VA AV L DV V+D +L + R + QA +E I Sbjct: 178 AEAIQYMVALAVAGLRAEDVAVIDPVKGILAGPKANRTEEPAVAAATQA--SLLEQKILS 235 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVT 307 L +GV N R + +++ Q + +DP+S+V R+ + S + +T Sbjct: 236 LLEPRVGVGNARVSATVDVSRQRQVTSAVTFDPNSRVIRNRTTNDSTGASAGAG--GGMT 293 Query: 308 VEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367 V N+P + + +N+ E +YEIN +++R++IAV++N+ Sbjct: 294 VASNLPQGGEGGGGNTSTNKNST---ETVSYEINETRTEVETLPGEVQRITIAVLLNEQA 350 Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVS 427 L + A+ +++++A GI++ RGDTI+I M F + + V Sbjct: 351 LGIDPAAADVATLTQQMAADFEQLIASAAGIDTARGDTISIELMPFQAVPVDDLIEVPGM 410 Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISS 487 ++ R+F + + A + G ++ Sbjct: 411 VEQLMERYFWSGLQA------------------------------LLLGLVVIVLGVGVV 440 Query: 488 AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILR 547 D ++ + + + V L +E A +L+ Sbjct: 441 RPMLVQKSKDALSPEDLGAGAGAEGAGRAVASGADVESDPFAYLKDYATDRQEETAALLQ 500 Query: 548 KWARSEIEDRYTQHIS 563 +W + + T I+ Sbjct: 501 QWLTEDQQSGQTDQIA 516 >gi|222530139|ref|YP_002574021.1| flagellar M-ring protein FliF [Caldicellulosiruptor bescii DSM 6725] gi|222456986|gb|ACM61248.1| flagellar M-ring protein FliF [Caldicellulosiruptor bescii DSM 6725] Length = 560 Score = 284 bits (726), Expect = 4e-74, Method: Composition-based stats. Identities = 117/585 (20%), Positives = 234/585 (40%), Gaps = 66/585 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L + + + S + + ++ +S+IL+ +++ A + PHY ++ L+ + I Sbjct: 9 LKSIKEKWSSFSKSQKIMFVVSSSIILLSVIV---AIYITTRPHYITIFSGLDPKEAAEI 65 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 LS+ ID + ++ G++I V + V +A++ A G P +SS + + +S T Sbjct: 66 QNILSDQKIDSKAANGGTTILVRDTDVDRAKMAAAQAGYPKNSSITFEDALKLSSSMTAT 125 Query: 124 SFMQEITRVRALEGEIARTIQSI-SGIVAARVHIVMPDMGSFR--KIGARPTASVMIRAI 180 + T ++ E EI + ++ + I A V++ +P+ +F +PTASV + Sbjct: 126 EADKRRTFIKLKESEIQQALKQMSDYIEDAVVNLSIPEDYTFALKSEAEKPTASVKLTLK 185 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQAIQ 238 E I+ VAA+V L +V ++D+ G L+ N + + K L + A + Sbjct: 186 KSLSSDQIEGIQRFVAASVEGLLPENVVIIDNKGNYLSDNSSDTTEGLSSKQLQLKIATK 245 Query: 239 HEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDA 294 +EIE I + L +++ ++ + +V ++N D Q+I E Y P DS + S + +K+ Sbjct: 246 NEIEKKIKELLGSYVSSPEDVKVSVNLDMNFDMQKISETKYSPVLEDSGIVVSKKTTKEE 305 Query: 295 QRSETSQPESAVTVEQNMPHVSDR-KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 +S S + N + + + K +E NY+ N K I T Sbjct: 306 AQSTNSSSSGVPGTDTNPTQNAPQYPITSQGGQSTYTKTDETVNYQNNEKKIETIKAPGT 365 Query: 354 L--ERLSIAVVV-NKGRLTEVLGRSADQGK--------------------IDSYLAEINK 390 + ++ SIAVV+ T+ ++Q K + I Sbjct: 366 INYDKSSIAVVLYRYVTYTQEDFEKSEQAKNMSWAQFKLQNQNNKRSFLTDQKEVETIIN 425 Query: 391 IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL 450 ++ +ATGI +T+ G +F+D R ++ + + L Sbjct: 426 LIKSATGI-----QNVTV------------EGYEIPTFVDKPQRQIP--VDYIYVALAFL 466 Query: 451 LVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFS 510 L+ L + + +K E+ G L L + + Sbjct: 467 LLMVFAASVLIK-ASRSKSKTVELAGVGPLEISEGKPTAEEILHEAEKRKEPEVEEI--- 522 Query: 511 HSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + Q + ++ +++ E A++LR W + E Sbjct: 523 -------NVEEFGVSQYEKQIDKLLKEKPEIVAQLLRNWLNEDWE 560 >gi|296531738|ref|ZP_06894564.1| flagellar M-ring protein FliF [Roseomonas cervicalis ATCC 49957] gi|296267937|gb|EFH13738.1| flagellar M-ring protein FliF [Roseomonas cervicalis ATCC 49957] Length = 472 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 129/371 (34%), Positives = 198/371 (53%), Gaps = 9/371 (2%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110 LY LE ++ RIS L E I +G +I VP V + R+ LAA+GLP +G Sbjct: 56 LYAGLEPAEAGRISARLEELKIPVEARGDG-TILVPMDQVARLRMQLAAEGLPRQGG-AG 113 Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170 YEL D+ + +TSFMQ + R+RALEGE+ARTI ++ G+ AARVHIV+P+ SF + Sbjct: 114 YELLDQTSPMQMTSFMQRVQRLRALEGELARTIVTMQGVRAARVHIVLPERESFSRDAPP 173 Query: 171 PTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG 228 PTASV + A AIR LVA AVP L DV+V+D G +L A+ G Sbjct: 174 PTASVTVTTSAGQRLGAAQAAAIRLLVAGAVPRLRQEDVSVMDGNGVVLAADGGMGAAAG 233 Query: 229 KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288 + I A +H ++ + L +G R+ E+ R +DP +VER Sbjct: 234 RLGEIRVAQEHALQKAVLDLLEPLVGRGKVRAVASVEVEGARTVARAETFDPLGQVERGR 293 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 +L + + SE + ++ VTV QN+P+ + RS+ + E N+EI++K T Sbjct: 294 QLQTEQENSEDGRGQAPVTVGQNLPNQQVNQ-NATRSVSAVQRNNETVNFEISSKVEETV 352 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 + ++R+S+AVVV+ +T+ G Q + + L + +V +A G N +RGDT+T+ Sbjct: 353 REPGAVKRVSVAVVVDG--ITDAEGNV--QPRPPAELERLAALVRSAVGYNQQRGDTVTV 408 Query: 409 TSMDFLENQLF 419 ++ FL ++ Sbjct: 409 DTLRFLPDEGL 419 >gi|312792647|ref|YP_004025570.1| flagellar m-ring protein flif [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179787|gb|ADQ39957.1| flagellar M-ring protein FliF [Caldicellulosiruptor kristjanssonii 177R1B] Length = 560 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 126/587 (21%), Positives = 238/587 (40%), Gaps = 70/587 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L + + + S ++ + +++ +S+IL+ + +AA + PHY ++ L+ + I Sbjct: 9 LKNIKEKWSSLSNSQKIMLVVSSSIILLSV---IAAIYITTRPHYVTIFSGLDPKEAAEI 65 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 LSE ID + ++ G++I V + V +A++ A G P +SS + + +S T Sbjct: 66 QNILSEQKIDSKAANGGTTILVRDTDVDRAKMAAAQAGYPKNSSITFEDALKLSSSMTAT 125 Query: 124 SFMQEITRVRALEGEIARTIQSI-SGIVAARVHIVMPDMGSFR--KIGARPTASVMIRAI 180 + T ++ E EI ++ + I A V++ +P+ +F +PTASV + Sbjct: 126 EADKRRTFIKLKESEIQEALKQMSDYIEDAVVNLSVPEDYTFALKSEATKPTASVKLTLK 185 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQAIQ 238 E I+ VAA+V L +V ++D+ G L+ N + + K L + A + Sbjct: 186 KSLSSDQIEGIQRFVAASVEGLLPENVVIIDNKGNYLSENSSDSTEGLSSKQLQLKIATK 245 Query: 239 HEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDA 294 +EIE + + L +++ ++ + +V ++N D Q+I E Y P DS + S + +K+ Sbjct: 246 NEIEKKVKELLGSYVSSPEDVKVSVNLDMNFDMQKISETKYSPVLEDSGIVVSKKTTKEE 305 Query: 295 QRSETSQPESAVTVEQNMPHVSDR-KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 +S S + N + + + K +E NY+ N K I T Sbjct: 306 AQSTNSSSSGVPGTDTNPTQNTPQYPISSQGGQSTYTKTDETVNYQNNEKKIETIKAPGT 365 Query: 354 L--ERLSIAVVV-NKGRLTEVLGRSADQGKI--------------------DSYLAEINK 390 + + SIAVV+ T+ +DQ K + I Sbjct: 366 INYDNSSIAVVLYRYVTYTQEDFEKSDQAKTMSWAQFKLQNQNNKRSFLTDQKEVETIVN 425 Query: 391 IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA--TVINALVFLVG 448 ++ +ATGI +T+ G +F+D R + AL FL+ Sbjct: 426 LIKSATGI-----QNVTV------------EGYEVPTFVDKPQRQIPVDYIYIALAFLLL 468 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 L + A R + VG I P + + G+ ++ N + Sbjct: 469 MAFAASLLIKATR--SKPRRLELAGVGPVEISEEKPTAEEILQGIEKKKEPEVEEINVEE 526 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 F S Q + ++ +++ E A++LR W + E Sbjct: 527 FGVS-------------QYEKQIDKLLKEKPEIVAQLLRNWLNEDWE 560 >gi|86157820|ref|YP_464605.1| flagellar M-ring protein FliF [Anaeromyxobacter dehalogenans 2CP-C] gi|85774331|gb|ABC81168.1| flagellar M-ring protein FliF [Anaeromyxobacter dehalogenans 2CP-C] Length = 533 Score = 283 bits (724), Expect = 6e-74, Method: Composition-based stats. Identities = 125/558 (22%), Positives = 226/558 (40%), Gaps = 49/558 (8%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +L QL + + +L L+L + L I + Y + L D Sbjct: 4 LLKQLRELPRLLGALPGGLKLVLVAGALAAIGVAALTAVRSAE-AYQYAFTNLTPEDSAE 62 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + AL A + +R+ GS+++VP+S V AR+ LA GLP G+E+FD+ G+ Sbjct: 63 AAGALGAAGVPYRLEAGGSALAVPASRVYDARLLLAGAGLPRGGG-VGFEIFDR-GDLGV 120 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 + F Q++ RA EGE+ARTI ++ + +ARVH+ +P+ G +R A+V++ Sbjct: 121 SEFTQKVNLRRATEGELARTISRLAQVRSARVHLTLPEKGLYRDQDRPAAAAVVVNLQPG 180 Query: 183 SVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240 IRHLV++AVP L V+V+D G++++ + LG+++ + ++ + Sbjct: 181 RTLGQREISGIRHLVSSAVPGLAPAGVSVVDGRGEVIS----DEGALGEAIGYQRRMERD 236 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 +E I L +G + V A L+ Q V DPDS RS R S+ + Sbjct: 237 LERRIVDLLGQAVGAGAVVARVTASLDQTEIQSSAQVLDPDSATLRSERKLTQQSSSDGA 296 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 P N P P R + +++ NY+++T + + +LERLS+A Sbjct: 297 GPAGVAGAAANQPLAPPAPAPGARGRSSASTEDQTRNYDVSTTTTTSVARVPRLERLSVA 356 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 V+V+ + Q + D+ +A + ++ A G ++ RGDT I+S F+ + Sbjct: 357 VLVDG---------AGGQPRADAEIARLGELAKRAVGFDADRGDTFEISSSPFVRAEEPA 407 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 + L R + + ++ Sbjct: 408 APPAPPPT--------------------------LLERPAVRWGALGAGALVGLALLALA 441 Query: 481 SPPPISSAVTT--GLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS---DLRLLHMI 535 A + P +A + + + ++ ++ S R + Sbjct: 442 LRRRRPPAAPEVLPIRPGARVAEIEAALARDAALPGAPAPRSAALADPSATLRDRARDLA 501 Query: 536 EINEERFAKILRKWARSE 553 + R A +L+ W E Sbjct: 502 TQDPTRTAHLLKAWIAQE 519 >gi|168698710|ref|ZP_02730987.1| Flagellar FliF M-ring protein [Gemmata obscuriglobus UQM 2246] Length = 523 Score = 283 bits (723), Expect = 7e-74, Method: Composition-based stats. Identities = 114/552 (20%), Positives = 207/552 (37%), Gaps = 44/552 (7%) Query: 1 MAILDQLLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVK-LEVS 58 M + ++LL+ ++ L R + + L ++ A + Y L L Sbjct: 1 MDVFNRLLEQARAYWAGLSAGRRIGVVLSFLGVLLALGAVVYLSPGGRYTPLGAGPLPPE 60 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 DV+ + LS I FR+S G+ I VP +A + LA G+P+ G+E+FD+ Sbjct: 61 DVSAMRTRLSGDGIPFRLSSGGTGIEVPDERYAEAVVSLAGAGIPARGGK-GFEVFDET- 118 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178 S T F+Q + RAL+ E+AR+I + + +ARV I P+ F + PTASV+I+ Sbjct: 119 SLMTTPFVQSVNYQRALQAELARSIMQMESVQSARVMIAKPEPSPFVRDQKNPTASVVIK 178 Query: 179 AINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIV 234 +A AI LVA ++ L +VTV+++ G+LL+ + L + Sbjct: 179 LKPRMTMNPATAGAIVSLVAHSIEGLRPENVTVMETGGRLLSDPNAAARSGLPTPQLEYI 238 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 + ++ + + L+ LG V A++N + R Y PD +V + R + Sbjct: 239 ERLETYLSTKAEEMLSKTLGPGRAVIRVSADVNFQKIKERVKTYSPDGRVGVAERTANST 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 S ++ N+ + ++ Q+++ ++ + + Sbjct: 299 --STGTRAGGVTGATANITRTGGSTANAGSGGGTSKEEVIQTDFLVSETLRDIEEGSGAV 356 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 RLS+A +V+ LT G++ + + A G R D++TI L Sbjct: 357 TRLSVAALVD---LTAADGQAVISQADAEEI------IRQAVGFRPGR-DSVTIARAP-L 405 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 + + + + + N V L +GL LRR Sbjct: 406 TGPNAGEPDDTLVRLQRIQTYVSLARNLSVAFAAVLSFLVIGLLLLRR------------ 453 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 P P + T + + + + R N+ +R M Sbjct: 454 ------RPVPEAQGATGTEPGAETAGAGPTGPVAPTPPPTTEERRNAE-----LIRFQTM 502 Query: 535 IEINEERFAKIL 546 +L Sbjct: 503 ARNEPATVVHVL 514 >gi|154249519|ref|YP_001410344.1| flagellar M-ring protein FliF [Fervidobacterium nodosum Rt17-B1] gi|154153455|gb|ABS60687.1| flagellar M-ring protein FliF [Fervidobacterium nodosum Rt17-B1] Length = 535 Score = 282 bits (722), Expect = 9e-74, Method: Composition-based stats. Identities = 109/570 (19%), Positives = 223/570 (39%), Gaps = 54/570 (9%) Query: 1 MAILDQLLQFF----KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLE 56 M + + +F + +L + + L++ +I I+ + VN+P Y L Sbjct: 1 MDWFRKFVDWFAKFPEKWKALQKGQKLVIIMIIASVILAIILLAI-VNAPKYVLLLTTRT 59 Query: 57 VSDVNRISVALSEANIDFRISDNGSSISVPSS-MVGKARIHLAAQGLPSSSSNSGYELFD 115 D + L I +++ G+ I +PSS V + R+ LA+ G+ S SS G+E+ D Sbjct: 60 EQDAGSVIQQLETLGIPYKVEA-GNRILIPSSYNVYEVRMRLASTGILSGSSR-GFEILD 117 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK-IGARPTAS 174 + S G TSF +++ AL+GE+ RTI +I G+ ++RV + +P + + + P AS Sbjct: 118 QT-SLGATSFDKQVRYQIALQGELERTISTIKGVQSSRVVLTLPKYTYYVRGEMSEPRAS 176 Query: 175 VMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGK 229 VM+ + + I L+ AV + ++ ++D TG+ LTA + + Sbjct: 177 VMVVMDPGQSLSKEQVKGIVSLIQGAVEGIKTENIKIIDQTGQDLTAMLNLDQSTALAST 236 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 + + +++ + I L G +LN + + + Y +K E +R Sbjct: 237 KMELKVNLENYYKQKIKVPLENIFGPGRVEVIPDVKLNWEKVEKQITTYTAPNKKEGLVR 296 Query: 290 LSK-DAQRSETSQP-ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 + +++ S TSQ V E N+P + + K E NYE+N Sbjct: 297 SKETESEYSTTSQGAGGPVGTESNIPPTTYESTEGTG-VTTYQKSHEIVNYELNQVIENI 355 Query: 348 THDN-YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD-T 405 + ++E ++++VV++ ++ D I I+ + N+ G T Sbjct: 356 VKNTEGEIENITVSVVIDSSS------TVLERTSKDEVQNYIKTIIEKSISANTPNGSVT 409 Query: 406 ITITSMDF---LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 + + F ++ Q + + +R +I L+ + ++LGL R+ Sbjct: 410 YAVAFLPFSREIQEQFYKELQTTTEIQKLRTR----LILVLLASILIFFASYLGLIQFRK 465 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 + ++ + + + + + I + +++ Sbjct: 466 IKARKMIQE------RYKLLQEEAQRALEAIEQAEEVQPGGEEEAILEQLKEYLQQVS-- 517 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARS 552 E + E A +L+ W Sbjct: 518 -------------EASPEEVATVLKVWISE 534 >gi|4378873|gb|AAD19741.1| flagellar M-Ring protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 555 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 105/500 (21%), Positives = 194/500 (38%), Gaps = 66/500 (13%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++++ + K + + ++ + F +++P +LY D I Sbjct: 34 VNKVYERVKDFVQQPAIKRSLPLMGLISLTAIGALIWFLLSAPTQRDLYPGARDGDRASI 93 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + AL I + I I+V KAR LA QGLP S+ + + G + Sbjct: 94 ARALETGGIHYNIKRGNGVITVSEKEFYKARDLLAQQGLPKSAPDGVH--VISSLPLGAS 151 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 ++ A E +ARTI++I + ARVHI P F + TASVM++ + Sbjct: 152 RAVEAKRLRAAREVVLARTIETIDVVNQARVHIAEPQPSPFVREQVHGTASVMLKLMTGR 211 Query: 184 VYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQAIQHE 240 +AI++LVAA+VP + V+V+D G LL+A + + +I + L + Q ++ Sbjct: 212 NLSNAQVQAIQNLVAASVPGMAPEAVSVVDQAGHLLSATSNADNDINDRQLRLQQTVEAR 271 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 +NK L LG +N+ + V +L+ Q Y P RS S + Sbjct: 272 YMDALNKLLVPLLGENNYTAEVHTDLDFTESQATRESY-PKEGSLRSESGSWNKDGGPD- 329 Query: 301 QPESAVTVEQNMPHVSDRKV---------------------------------------- 320 Q NMP Sbjct: 330 QNGGIPGAMSNMPPTPANPTQNPPPNLQPPAQPNNQQNAQNGQQGQNAQGQPNGQNAQQG 389 Query: 321 ---------PLPRSLENTDKKEEQSN--YEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369 P + + + E N YE+ + + ++R+S+A+ + + Sbjct: 390 QNARAPGSVPAETAQQAQARTSENFNRYYELGREVSVIRNPTGSVKRVSVAIALRQINHG 449 Query: 370 EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFM 429 + +A++ K++ A G ++ RGD + I+S DF+ +F+ Q S++ Sbjct: 450 --------KPPSPEQVAQLEKLIKGAIGFDASRGDVVAISSSDFMGGSVFSMPWYQNSWV 501 Query: 430 DILSRHFATVINALVFLVGT 449 +L+R+ + ++ A + + G Sbjct: 502 PLLARNLSALLVAALVIFGF 521 >gi|126462456|ref|YP_001043570.1| flagellar M-ring protein FliF [Rhodobacter sphaeroides ATCC 17029] gi|126104120|gb|ABN76798.1| flagellar M-ring protein FliF [Rhodobacter sphaeroides ATCC 17029] Length = 570 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 121/572 (21%), Positives = 227/572 (39%), Gaps = 43/572 (7%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 +LDQ+ +F R + A +IL +L +A + P LY L ++ Sbjct: 23 GMLDQIRRF----GDQPGLRRAMPAILILAVTVLALAGWILLREPARVTLYPGLPEAEKA 78 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 R+ +L+ I I + ++VP + +AR+ LAAQGLP + L D G Sbjct: 79 RVIDSLTGGGIAAVIDERTGEVAVPGADYHRARMLLAAQGLPQGLPDGNALLSDL--PMG 136 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 + ++ +A E ++AR+I IS + AARVH+ +P+ +F + P ASV ++ + Sbjct: 137 TSKSVETARLRQAQELDLARSITEISAVSAARVHLALPERSAFLRESQPPRASVFLQIVP 196 Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAI 237 EAI +LV+++VP + DVTV+D G+LL+ + + + L + Sbjct: 197 GRTLDGAQVEAIVNLVSSSVPGMARQDVTVVDQMGRLLSRGSDDPAVLLNDRQLQHRVQL 256 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + I L G N V +++ Q+IRE DPD + + + + Sbjct: 257 ETLYRNRIESLLTPIAGPGNLAVQVTIDMDFTRQEIREEQVDPDRTALLAEQSQIEE--T 314 Query: 298 ETSQPESAVTVEQNMP--------HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 Q N P + + + N+E++ K T Sbjct: 315 ADPQARGIPGAVSNSPPPEAALEAGAPPTAAGEAATPMRSRSQNSTRNFEVSRKIETTLP 374 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL--AEINKIVSAATGINSRRGDTIT 407 ++ R+S AVVV +A + A++ ++ +A G ++ RGD +T Sbjct: 375 ATARVARVSAAVVVRAQPQPAATDPAAPPPPLLPEALKADLERLTRSAVGFDADRGDVVT 434 Query: 408 ITSMDFLENQLFNS-GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 IT+ FL+ + + G ++ L+R + V + L +R + N Sbjct: 435 ITAQPFLDTVVPEASGWSAEPWLADLARQGFLLAALAV----------VALGVVRPILNR 484 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI--NSYVS 524 + T + + +LD + + L + + Sbjct: 485 VL--------LPAPAAAGALPLGETAVEVGEGESLDDVRARLKARQGALTKNMLDAARSH 536 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIED 556 ++ L + ++E +E R A +R+ +E++ Sbjct: 537 EEQILVIRKLVEEDEGRIATTIRQMIAAELDT 568 >gi|157364749|ref|YP_001471516.1| flagellar M-ring protein FliF [Thermotoga lettingae TMO] gi|157315353|gb|ABV34452.1| flagellar M-ring protein FliF [Thermotoga lettingae TMO] Length = 536 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 106/563 (18%), Positives = 222/563 (39%), Gaps = 47/563 (8%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 I + L F++ L R ++ + + + I++ + FV +P Y L L Sbjct: 6 KIQEYLKGFYEKWKGLPRGNKILFSGIAVSIIIVGILTIIFVAAPRYTLLVSGLTDEQSG 65 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 + L +++++ G + V + R+ LA+ G+ ++ G+E+ D+ SFG Sbjct: 66 YLIQQLETMGVEYKVEP-GRVLVSDKYNVYELRMRLASMGV-LGATTKGFEILDQ-QSFG 122 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK-IGARPTASVMIRAI 180 TSF +++ AL+GE+ R+I +ISG+ +ARVH+ +P + + A P ASV++ Sbjct: 123 ATSFDKQVRYQVALQGELERSIMTISGVRSARVHLTLPKYTYYVRGEMAEPKASVLVVLQ 182 Query: 181 NPSVYK--SAEAI-RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIV 234 + I LVA AV + + +V V+D ++L+ + + Sbjct: 183 PGQDLSQNQIKGIMVELVAGAVEGMKLENVKVIDQMSRVLSDKVTASQDMLLASNRAELK 242 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 +++ + I + L + G +LN + + + Y+P ++ +R + Sbjct: 243 MSLESYYQKKIKQTLESVFGPSRVEVIPDIKLNWERVERQLTKYEPATRQGGIVRSQEQE 302 Query: 295 QRSETSQP--ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD-N 351 + P AV + N+P S ++ +NYE+NT + Sbjct: 303 SEKSANLPATGGAVGTDSNIPPTYPTTTSQGTST--YERSHTITNYELNTVVENVVQNKE 360 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 +++ LS++V+++ + + ++ D+ + + + ++ +V G NS D S+ Sbjct: 361 GEIDTLSLSVIID---ASSSVFQNFDEAERERWANIVSDLVEKGIGANSS--DPNLAVSV 415 Query: 412 DFLENQLFNSGTVQVSFMDI-LSRHFATVINALVFLVGT-LLVTFLGLHALRRLHNIDDA 469 FL Q S +I R F ++ + L ++ +L + RR+ + Sbjct: 416 AFLPFDRTFEEEYQKSLSEIERKRRFTMMVTGVSLLFALGFMLFYLMIIQFRRIRSRRLI 475 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 + E K + + + AL ++ Sbjct: 476 E--ERKLKMEEELKKVFEEEEEVPLTPEQQALLELKEN---------------------- 511 Query: 530 RLLHMIEINEERFAKILRKWARS 552 L + + E A I++ W Sbjct: 512 -LEKIYRESPEEVANIIKLWLVE 533 >gi|146296280|ref|YP_001180051.1| flagellar M-ring protein FliF [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409856|gb|ABP66860.1| flagellar M-ring protein FliF [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 562 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 126/585 (21%), Positives = 239/585 (40%), Gaps = 63/585 (10%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 D L + + L +++ ++L + I+ + A + PHY L+ L+ D +I Sbjct: 7 DFLKRIKERLDKLSKSQKIMLIVSSSIIILSVIIALYVTTRPHYVVLFSGLDPKDAAQIQ 66 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L E ID ++++ G++I V + + KA++ A G P SS + + +S T Sbjct: 67 QTLLEQKIDSKVTNGGTTILVKDTDIDKAKMVAALSGYPKSSEITFEDALKLSSSMTATE 126 Query: 125 FMQEITRVRALEGEIARTIQSI-SGIVAARVHIVMPDMGSFR--KIGARPTASVMIRAIN 181 + T ++ E EI R ++ + I A V++ +P+ +F +PTASV + Sbjct: 127 SDKRRTFIKLKESEIQRALKEMTDYIDDAVVNLSVPEDYTFALKDETTKPTASVKLTLKK 186 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQH 239 E I+ VAA+V L +V ++D+ G L+ N + I K L I A ++ Sbjct: 187 SLSSDQIEGIQRFVAASVEGLLPENVVIIDNKGNYLSDNSFDSSEGISSKQLQIKIATKN 246 Query: 240 EIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQ 295 EIE + + L ++ ++ + +V ++N D Q++ E Y P D + S + +K+ Sbjct: 247 EIERKVKELLGNYVSSPEDVKVSVNLDMNFDMQKVSETKYSPVLEDGGIVVSRKTTKEEA 306 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVP--LPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 +S + + N P ++ + P + K +E NY+ N K I T Sbjct: 307 QSTNAGANGIPGTDTN-PTQNNPQYPLSSQGGQSSYSKTDETVNYQNNEKKIETIKAPGT 365 Query: 354 L--ERLSIAVVV---------NKGRLTEVLGRSADQGKI------------DSYLAEINK 390 + ++ SIAVV+ + + + S D+ K+ + I Sbjct: 366 INYDKSSIAVVLYRYVTYRQEDYEKSNQAKTMSWDEFKLQNQNNKRSFLTDQKEVENIVN 425 Query: 391 IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL 450 +V +ATGI +T+ G +F+D R ++ + L Sbjct: 426 LVKSATGI-----QNVTV------------EGYEIPTFVDKPQRQIP--LDYIYVAFAFL 466 Query: 451 LVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFS 510 L+ + L + + AK+ E+ G +S P V L + ++I Sbjct: 467 LLMAFAISLLIKSLKVKPAKQVELAGVGGVSIPSEQEKVEEILQEAQKKKEEQPIEEI-- 524 Query: 511 HSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 I + Q + ++ ++ E A++LR W + E Sbjct: 525 -------NIEEFGVSQYEKQIDKLLREKPEVVAQLLRNWLNEDWE 562 >gi|84514816|ref|ZP_01002179.1| Flagellar FliF M-ring protein [Loktanella vestfoldensis SKA53] gi|84510975|gb|EAQ07429.1| Flagellar FliF M-ring protein [Loktanella vestfoldensis SKA53] Length = 616 Score = 281 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 111/576 (19%), Positives = 223/576 (38%), Gaps = 51/576 (8%) Query: 26 ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISV 85 + ++L + + +P L+ L ++ + AL D +I I+V Sbjct: 43 VIAAALLVVLGLILYLILQAPQRTTLFAALPEAEKAAVMDALRNNGTDVQIDPVTGDITV 102 Query: 86 PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145 P+ +R+ LAAQGLP S + GY + G + ++ + ++ E E+AR+I Sbjct: 103 PTGEFYNSRMSLAAQGLPQSMPD-GYSVL-TDMPMGTSRSVESMRLKQSQEVELARSINE 160 Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLD 203 I + A+RVH+ +P+ +F + PTASV ++ + + AI +LV+++V NL Sbjct: 161 IDVVSASRVHLAIPERSAFARNAQNPTASVFVQVMPGRSLSEQQVMAIVNLVSSSVANLP 220 Query: 204 MGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSA 261 VTV++ G+LL+ N+ ++ + L +++ I L +G N + Sbjct: 221 KTSVTVVNQNGQLLSDTVNDPATDLADRQLEYQLRLENIYRTRIESLLTPIVGPGNVSAQ 280 Query: 262 VVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ--PESAVTVEQNMPHVSDRK 319 V +++ + E + PD S +++ + + +E SQ P + P + Sbjct: 281 VSLDIDFTRTERTEDMVIPDQSALLSEQVAVEEEVAEASQGIPGTVGNTPPPRPELEQPA 340 Query: 320 VP-------------------------------LPRSLENTDKKEEQSNYEINTKSIATT 348 P NYE++ + Sbjct: 341 GAADGQAPAEAGATAEAGANTVAEIYAPVDRNTGPGQPRLRSSDSTMRNYEVSRTVTSEN 400 Query: 349 HDNYKLERLSIAVV------VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402 ++ + +AV+ V + + A G S L E+ +VS GI+ R Sbjct: 401 SPMTRINGVHVAVLLRETLPVAPTEDGDAVAAPAI-GLDPSRLDEVKSLVSRTVGIDESR 459 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 GDT+ ++S+ F+ + S + + + + +V L V LGL ++ Sbjct: 460 GDTLIVSSLPFISPEAVISSLSGSTELVWHEDPWIREMMRNALMVIVLAVVTLGL--IKP 517 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS--RIN 520 L A GE GG + + ++ + + ++ S ++ Sbjct: 518 LLTQFLASSGESGGYGNVITTEDGEIIDMDVIEMEEGQTLEEIKAKLKPKKSTISAEMLD 577 Query: 521 SYVSKQSDLRLLHMIEINE-ERFAKILRKWARSEIE 555 + S + L+ MI +E R + + + +++ Sbjct: 578 TANSYDDKVALIRMIVADEAGRVSNVFKALMEDDLD 613 >gi|220917658|ref|YP_002492962.1| flagellar M-ring protein FliF [Anaeromyxobacter dehalogenans 2CP-1] gi|219955512|gb|ACL65896.1| flagellar M-ring protein FliF [Anaeromyxobacter dehalogenans 2CP-1] Length = 533 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 124/553 (22%), Positives = 223/553 (40%), Gaps = 39/553 (7%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +L QL + + +L L+L + LV I + + + Y + L D Sbjct: 4 LLKQLRELPRLLGALPAGLKLVLVAGALVAIGVAALSAVRSSE-AYQYAFTNLTPEDSAE 62 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + AL A + +R+ GS+++VP+S V AR+ LA GLP G+E+FD+ G+ Sbjct: 63 AAGALGAAGVPYRLEAGGSALAVPASRVYDARLLLAGAGLPRGGG-VGFEIFDR-GDLGV 120 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 + F Q++ RA EGE+ARTI ++ + +ARVH+ +P+ G +R A+V++ Sbjct: 121 SEFTQKVNLRRATEGELARTISRLAQVRSARVHLTLPEKGLYRDQDRPAAAAVVVNLQPG 180 Query: 183 SVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240 IRHLV++AV L V+V+D G++L+ + LG+++ + ++ + Sbjct: 181 RTLDQREISGIRHLVSSAVAGLAPAGVSVVDGRGEVLS----DEGPLGEAMGYQRRMERD 236 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 +E I L +G + V A L+ Q V DPDS RS R S+ + Sbjct: 237 LERRIVDLLGQAVGPGAVVARVTASLDQTEVQSSAQVLDPDSATLRSERKLTQQSSSDGA 296 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 P N P R + +++ NY+++T + + +LER+S+A Sbjct: 297 GPAGVAGAAANQPLAPPAPAAGARGRSSASTEDQTRNYDVSTTTTTSVARVPRLERISVA 356 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 V+V+ +A + D+ +A + ++ A G ++ RGDT I+S F+ + Sbjct: 357 VLVDG---------AAGAPRADAEIARLGELAKRAVGFDADRGDTFEISSSPFVRAEEPA 407 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 +L R + + Sbjct: 408 PPPAPP--PALLER-----------------PAVRWGALGAGALVGLALLAAALRRRRAP 448 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 + P + + AL + + + + S R + + Sbjct: 449 AAPEVLPIRPGARVAEIEAAL--ARDAALPGAPPPRPAALADPSATLRDRARDLASQDPT 506 Query: 541 RFAKILRKWARSE 553 R A +L+ W E Sbjct: 507 RTAHLLKAWIAQE 519 >gi|326386946|ref|ZP_08208560.1| flagellar M-ring protein FliF [Novosphingobium nitrogenifigens DSM 19370] gi|326208626|gb|EGD59429.1| flagellar M-ring protein FliF [Novosphingobium nitrogenifigens DSM 19370] Length = 561 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 106/541 (19%), Positives = 202/541 (37%), Gaps = 51/541 (9%) Query: 28 VILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPS 87 + + + + LY L S+ +++ AL +A I + I++ +++V Sbjct: 49 AGVAAVGMAGLLWLEMAPAPQRVLYTDLNDSERAQVTAALDKAAIRYTINNQTGAVTVGE 108 Query: 88 SMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSIS 147 + KAR+ AA G ++ +G ++ DK+ G + ++ A E E+ TI I Sbjct: 109 DDLYKARMVAAADG-ALATPETGEQMIDKL-PMGASRTVEGQRLQAARERELELTIMQIE 166 Query: 148 GIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMG 205 G+ A RVH+ P+ F + A TASVM++ AI +LVA +V L + Sbjct: 167 GVEAVRVHLAEPEKSVFVRDNAPATASVMVKLAKGRQLSDSQVTAIVNLVAGSVAGLSVD 226 Query: 206 DVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE 265 V V+D G LL++ + + + ++ ++ + L LG NF S + + Sbjct: 227 AVKVIDQQGHLLSSGRPGDD---DRIEMQARLEDKLRQQVETLLTPMLGTGNFSSEIQVD 283 Query: 266 LNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN-----------MPH 314 L+MD Q YD V + + + P V N P Sbjct: 284 LDMDQQTSARESYDKQGVVRSETQTASQT--TGNGAPVGVPGVLSNTPPPQTQPSPGAPT 341 Query: 315 VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR 374 + P + NYE+ + T K+ RLS+AV ++ + + Sbjct: 342 ANTTPASPPAPSPTSSDTSSTRNYELGREVAVTNASPGKVRRLSVAVALSGAAMAKAK-- 399 Query: 375 SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSR 434 + +I ++VSAA G + RGD +T+ +F + + + ++ R Sbjct: 400 -------PGEIDQIKQLVSAAVGADPTRGDQVTVVVRNFQPTTVEQPKFWETPWFAMMVR 452 Query: 435 HFATVINALVFLVGTLLVTFLGLHALRR---LHNIDDAKKGEVGGKSILSPPPISSAVTT 491 + ++ L+ L+ + L R D+++ E P P + Sbjct: 453 NGVALLAVLLTLLLGVRPLIKALRRDHRGAAKIESDESEDSETAEAEDSEPEPDRPELIP 512 Query: 492 GLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWAR 551 P+ + + ++ L R ++ E +LR+ + Sbjct: 513 AQNPDTGVV----DPELLGRQVGLAQR---------------LVRERPETAVAVLRQMLK 553 Query: 552 S 552 Sbjct: 554 D 554 >gi|226225737|ref|YP_002759843.1| flagellar M-ring protein [Gemmatimonas aurantiaca T-27] gi|226088928|dbj|BAH37373.1| flagellar M-ring protein [Gemmatimonas aurantiaca T-27] Length = 540 Score = 280 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 120/574 (20%), Positives = 222/574 (38%), Gaps = 59/574 (10%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++ LL+ LG R ++ +V +V L + P LY + V V + Sbjct: 1 MNSLLESLTGR--LGGARQAMIIAVGVVVTALVFGVSRWATKPTMVPLYADVPVEQVKAM 58 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + L+EA I + + GS+I V S+ + +AR+ LAA +P+S G ELFDK ++G+T Sbjct: 59 TDKLTEAGITYELDRTGSTIMVQSADLARARVDLAAGTVPNSGRP-GLELFDK-PTWGMT 116 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 F Q++ RALEGE+ RTI + + + +VH+ + D F++ ASV + N Sbjct: 117 DFTQKVNYRRALEGELERTISKMKDVKSVKVHLAIEDDQLFKQNERPSKASVTLAMNNSI 176 Query: 184 VY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQAIQH 239 ++ I LVA++V L+ VT++D G+ LT + + + LS+ + + Sbjct: 177 APRAEAVRGIASLVASSVGGLEPEHVTIVDERGEALTMEDDGSMAGLTSRQLSVQREAES 236 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 +E +K L++ +G N R V A +N D + DPD + + + ++ + Sbjct: 237 YLEQKADKLLSSLVGSGNARVQVSASMNFDKVERTVQAVDPDRQAIATEQKAEVTPSNPQ 296 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + T ++YE T +++L++ Sbjct: 297 QGAGYSTTA---------------------------TSYENTRSVENFTGAVGNIKKLTV 329 Query: 360 AVVVNK------------------GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR 401 AV+V + + L I +V A G++S Sbjct: 330 AVLVADRVVLPPAAPVPADSAAAAAAAALPPVAPTIETRTPDELTRIEALVRNALGVDST 389 Query: 402 RGDTITITSMDFLENQLFNSGTVQVSF-MDILSRHFATVINALVFLVGTLLVTFLGLHAL 460 RGD I++ S F + D+L R + + +L+ L + Sbjct: 390 RGDMISVVSAPFDMPAPVVAVKETNPVPTDLLGRIQSNPKPVVAIAALVVLLI---LALV 446 Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520 + ++ E +P +T + LD D + + +I Sbjct: 447 TVVLLRPKKQQIEAPAVLPAAPAYAELPASTQMQQAMQEMLDEEPMDQMALIEEQRRQIV 506 Query: 521 SYVSKQSDLRLLHM--IEINEERFAKILRKWARS 552 + R M ++ + +++R W R Sbjct: 507 LPPPPTTPEREQAMATVDQRPDAALRVVRNWLRQ 540 >gi|289805827|ref|ZP_06536456.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 410 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 92/433 (21%), Positives = 170/433 (39%), Gaps = 50/433 (11%) Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDV 207 +ARVH+ MP F + P+ASV + A+ HLV++AV L G+V Sbjct: 1 KSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNV 60 Query: 208 TVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAEL 266 T++D +G LLT +N R++ L ++ I+ I L+ +G N + V A+L Sbjct: 61 TLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQL 120 Query: 267 NMDTQQIREIVYDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP---------- 313 + ++ E Y P+ ++ S+ SE P N P Sbjct: 121 DFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIAT 180 Query: 314 ----HVSDRKVPLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 + + P + N++ + E SNYE++ T + +ERLS+AVV Sbjct: 181 PPTNQQNAQNTPQTSTSTNSNNAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVV 240 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 VN L + + +I + A G + +RGDT+ + + F ++ Sbjct: 241 VNYKTLADGKPL----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDNT 293 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482 ++ F S ++ A +L+ ++ L A+ ++ + + Sbjct: 294 GGELPFWQQQS-FIDQLLAAGRWLLVLVVAWILWRKAVHPQLTRR-VEEAKAAQEQAQVR 351 Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542 AV L ++ + +NQ R+ + V Q R+ M + + Sbjct: 352 QETEEAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVV 397 Query: 543 AKILRKWARSEIE 555 A ++R+W ++ E Sbjct: 398 ALVIRQWMSNDHE 410 >gi|302872571|ref|YP_003841207.1| flagellar M-ring protein FliF [Caldicellulosiruptor obsidiansis OB47] gi|302575430|gb|ADL43221.1| flagellar M-ring protein FliF [Caldicellulosiruptor obsidiansis OB47] Length = 560 Score = 279 bits (714), Expect = 8e-73, Method: Composition-based stats. Identities = 120/586 (20%), Positives = 230/586 (39%), Gaps = 67/586 (11%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 D L + + +++ ++ + ++ +AA + PHY ++ L+ + I Sbjct: 7 DFLKNIREKWANFSKSQKIMFIISSSIILLSVIAAIYITTRPHYVTIFSGLDPKEAAEIQ 66 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 LSE ID + ++ G++I V + V +A++ A G P +SS + + +S T Sbjct: 67 NILSEQKIDSKAANGGTTILVRDTDVDRAKMAAAQAGYPKNSSITFEDALKLSSSMTATE 126 Query: 125 FMQEITRVRALEGEIARTIQSI-SGIVAARVHIVMPDMGSFR--KIGARPTASVMIRAIN 181 + T ++ E EI ++ + I A V++ +P+ +F +PTASV + Sbjct: 127 SDKRRTFIKLKESEIQEALKQMSDYIEDAVVNLSIPEDYTFALKDEATKPTASVKLTLKK 186 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQAIQH 239 E I+ VAA+V L +V ++D+ G L+ N + + K L I A ++ Sbjct: 187 SLGSDQIEGIQRFVAASVEGLLPENVVIIDNKGNYLSDNSSDTTEGLSSKQLQIKVATKN 246 Query: 240 EIEMNINKALAAFLG-VDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQ 295 EIE + + L ++ ++ + +V ++N D Q+I E Y P DS + S + +K+ Sbjct: 247 EIEKKVKELLGNYVNSPEDVKVSVNLDMNFDMQKISETKYSPVLEDSGIVVSKKTTKEEA 306 Query: 296 RSETSQPESAVTVEQNMPHVSDR-KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 +S S + N + + + K +E NY+ N K I T + Sbjct: 307 QSTNSSSSGVPGTDTNPTQNTTQYPITSQGGQSTYTKSDETVNYQNNEKKIETIKAPGTI 366 Query: 355 --ERLSIAVVV-NKGRLTEVLGRSADQGK--------------------IDSYLAEINKI 391 ++ SIAVV+ T+ +DQ K + I + Sbjct: 367 NYDKSSIAVVLYRYITYTQEDFEKSDQAKNMTWAQFKLQNQNNKRPFLTDQKEIETIVNL 426 Query: 392 VSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA--TVINALVFLVGT 449 + +ATGI +T+ G +F+D R + AL FL+ Sbjct: 427 IKSATGI-----QNVTV------------EGYEVPTFVDRPQRQIPVDYIYVALAFLLLM 469 Query: 450 LLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF 509 + L + A R + VG I P++ + + Sbjct: 470 VFAISLLIKASR--GKSRTVELAGVGPVEISEEKPVAEGILQ-------------EAEKR 514 Query: 510 SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + + + Q + ++ ++ E A++LR W + E Sbjct: 515 KEAEVEEINVEEFGVNQYEKQIDKLLREKPEIVAQLLRNWLNEDWE 560 >gi|256370955|ref|YP_003108779.1| flagellar M-ring protein FliF [Acidimicrobium ferrooxidans DSM 10331] gi|256007539|gb|ACU53106.1| flagellar M-ring protein FliF [Acidimicrobium ferrooxidans DSM 10331] Length = 513 Score = 279 bits (714), Expect = 8e-73, Method: Composition-based stats. Identities = 119/550 (21%), Positives = 223/550 (40%), Gaps = 59/550 (10%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L+ F SG + G+ ++++ ++V I + +A+ +SP Y L+ L D I+ L Sbjct: 14 LRRFASGFTTGQKAVVMVGIALVVAIAVALASL--TSSPSYGVLFSGLSAQDAGSITAKL 71 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM- 126 A + + +++ G+++ VP ++V + R+ LA GLPS ++ +N +TS Sbjct: 72 QSAGVPYELTNGGTTVLVPQNLVDQERVSLAEAGLPSQTAG-----LTSLNGLSITSSQI 126 Query: 127 -QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRAINP-- 182 Q+ AL+ ++A+TI++I+G+ +A+V++ +P +F ++P+ASV++ Sbjct: 127 TQQADYQAALQSQLAQTIEAINGVQSAQVNLALPPTDAFAIGQSSQPSASVIVTLDAGVS 186 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242 + EAI HLVA+A+P ++ DVTV D G +L A + N G S Q ++E Sbjct: 187 LTSQQVEAIVHLVASAIPGMNANDVTVADQNGDVLAAPGLGVNAQGAGQS-AQGFDSQLE 245 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 +I L +G N V A L+ + + + Q + Sbjct: 246 ASIQSMLDTIVGPGNANVRVAATLSTNQVTTKTQSIQTQKGKPLTTPTQTQTQTQTFTGN 305 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 + ++ + + + Y I + ++RLS+AV Sbjct: 306 GTVPGGTLGTTGIAT----TGNQVSTYKQTSSTTQYAIGQVTQTVQQAPGAIQRLSVAVA 361 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 VN LA++ ++V+AA GI RGDT+++ ++ F SG Sbjct: 362 VNSHVKGLS-------------LAKLRQVVAAAAGIVPARGDTLSVVAVPFPALATTPSG 408 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482 F IL + ++ ++G L L A R Sbjct: 409 AGSSLFGSIL-----GIAKVVLLVLGALGAILLMSRAAAR-----------------TEV 446 Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542 P+ A + L +++ + + + +L I+ E Sbjct: 447 EPLFPAELEPALAGTGGQLAGPTEELPAVALPQSQPVVGED-------VLDYIDRQPEDV 499 Query: 543 AKILRKWARS 552 AK+LR W + Sbjct: 500 AKLLRVWMTA 509 >gi|220913732|ref|YP_002489041.1| flagellar M-ring protein FliF [Arthrobacter chlorophenolicus A6] gi|219860610|gb|ACL40952.1| flagellar M-ring protein FliF [Arthrobacter chlorophenolicus A6] Length = 532 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 121/555 (21%), Positives = 212/555 (38%), Gaps = 46/555 (8%) Query: 6 QLLQFFKSGTSLGR-----TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 Q+ FF S + R L + V V ++ +A ++ P Y L+ L+ +D Sbjct: 4 QITAFFTRMGSGIKGFSAAQRTLAIIGV-AVLVLGTVALTSWLAKPAYTPLFSGLKDTDA 62 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 N I L + N+ + I++ GS+I VP V R+ AA S++ +GY L DK+ Sbjct: 63 NGIVEQLRKDNVPYEIANGGSTILVPEEKVYDERLK-AAAAGLPSAAATGYSLLDKL-GV 120 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 + F Q +T RALEGE+A TIQ++ G+ AA V + +P+ F TASV + Sbjct: 121 TSSEFQQSVTYKRALEGELATTIQAMEGVKAAAVRLAIPEKSVFVDKTPDATASVFVETQ 180 Query: 181 NPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQ 238 + +A+ HL +AA+ NL +V+V+DS G +L+ + G S Q Sbjct: 181 PGTTLSPDKVQAVVHLTSAAIENLKPANVSVVDSQGNVLST--VGGGAAGSSSKQAGEYQ 238 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 ++ L + +G N AV A++ ++ Q R + + V +K + Sbjct: 239 ERTTDSVKAVLDSVVGPGNATVAVAADVTGESAQQRSETFTAAADVPALSESTKSETYTG 298 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 T + V N+ D + N +N + ++R + Sbjct: 299 TGGGAAGVLGPDNI-----AVPGGTNGNSTFDSTDSTKNNAVNKVTEDRIIPQGAVKRQT 353 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 I+V +N+ V LA + +V++A G + RGD +T+ + F Sbjct: 354 ISVAINQAAAAGVN------------LASVRSLVTSAAGADPARGDVVTVEVLPFSTAAA 401 Query: 419 FNSGTVQVSFMDILS-----RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 N+ T++ A L+ L + + L + RR + G Sbjct: 402 DNAAASLAEAKAEAEAAQQGELMKTLVIAGSILLAALALIVVALISWRRRQRREPVDLGI 461 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 + + A T + +++I + Sbjct: 462 GIEYPVAPVTALEPAPATSAIQLPLAEPLPLPGADVLDGERRRAQIEA------------ 509 Query: 534 MIEINEERFAKILRK 548 M+ + R A LR Sbjct: 510 MVAESPARTADYLRG 524 >gi|328958284|ref|YP_004375670.1| flagellar M-ring protein [Carnobacterium sp. 17-4] gi|328674608|gb|AEB30654.1| flagellar M-ring protein [Carnobacterium sp. 17-4] Length = 524 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 107/568 (18%), Positives = 232/568 (40%), Gaps = 62/568 (10%) Query: 4 LDQLLQFF----KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 +D + + + +LG+++ + L V++ + + + ++ Y L+ LE +D Sbjct: 1 MDGMKKIWTGIKDGWKNLGKSKQIGLVFVLIFVVSIVTSLTYYTQKVEYATLFSDLEEAD 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I + I +++ D+G++I + + V RI LA + S+ +G+E+FD+ S Sbjct: 61 AGTIVNDIKTKGIKYKLEDDGTTILIDQAQVDTYRIELAVNDMLPKST-TGFEIFDET-S 118 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI--GARPTASVMI 177 T ++I RA+ GE+ R+I ++ I A+V + +P+ F ++ +AS+++ Sbjct: 119 MMATDEDRKIMYQRAVTGELERSISALDSIEQAKVMLSLPEDSVFTSEENQSQASASIVL 178 Query: 178 RAINPSV--YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT------ANEMERNILGK 229 I+ S + + I LV+ AV NL ++ ++D+ G LL+ N +++ K Sbjct: 179 TPISGSQIPMSAVQGIASLVSGAVDNLPKENIKIVDTAGNLLSTALEDEGNLNATDLVSK 238 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 +I ++ + E+E + + L G+D AV A++N D+ + I Y + S+R Sbjct: 239 YQAITKSYEQELEQKLLQTLGPIYGMDKMTVAVNAKMNFDSNESEIINYG-----DSSVR 293 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 + T E E ++ + + + +NYE+N+++ T Sbjct: 294 SEAVSAGGGTIDVEEGEGFENSINQIQSGEEGGNSTYN------RTTNYELNSETTNTIK 347 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 ++E+LS +V+ + + + IV+ G R DTI+I Sbjct: 348 APGEVEKLSASVIFDGN-------------LNPADQESLEAIVATTIGSVEER-DTISIQ 393 Query: 410 SMDF----LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465 +DF ++ S D L R++ ++ L L + Sbjct: 394 GIDFATTTDATDTTAPEQLKSSIRDTLVRYWPYLVGGLAIL----------------VIL 437 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 I + ++ + + +L+ ++N +S+ Sbjct: 438 IVLLRLLRKRNDDDDELDFFDEEEPEPIIEPVRPVRPTDEERKAKEQADLKRQLNKNMSE 497 Query: 526 QSDLRLLHMIEINEERFAKILRKWARSE 553 + + + + E A +++ W + E Sbjct: 498 KEST-VRDYAKESPEGAADLIKIWMKDE 524 >gi|160902819|ref|YP_001568400.1| flagellar M-ring protein FliF [Petrotoga mobilis SJ95] gi|160360463|gb|ABX32077.1| flagellar M-ring protein FliF [Petrotoga mobilis SJ95] Length = 516 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 100/559 (17%), Positives = 217/559 (38%), Gaps = 60/559 (10%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + Q+ ++K+ + ++L ++ I+ F ++ +Y+ L+ ++ I Sbjct: 5 MQQIRDWWKNLEDRKKRNYIVLLITVVALIVFF---SILLSRKNYEFFIGGLDQANAGNI 61 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L E I++++ D G+ I V + V + R+ LA++G + GYEL + FG T Sbjct: 62 VTKLEEMGIEYKVDDFGN-IYVANQNVSELRMKLASEG-SLGYNLQGYELL-QNQGFGAT 118 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINP 182 S+ +++ ALEGE++R+I S+ + +ARVH+V+P + +P+ASV++ Sbjct: 119 SYDKQVNYQIALEGELSRSIASMDSVQSARVHLVIPPRTYYQVGESPKPSASVLLVLNPG 178 Query: 183 S--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAI 237 + + I +LVA AV L ++ V+D+ L+A + + I Sbjct: 179 ASVTSSQIKGIINLVAGAVAGLQPENIKVVDNFSNDLSAQIALGEDIGSADTKFKLKAEI 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDA 294 + + + L + G+ N ELN + + + +P ++ + S + + Sbjct: 239 ERYYKEKVESGLQSVFGLGNVVVVPEIELNWQKIEEEQRMVEPVVDENGIILSQQTKTE- 297 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTK-SIATTHDNYK 353 Q S + V+ N+P + + + + +NY++N + N + Sbjct: 298 QSSSSPNSGGVPGVDSNIPPYTYQTP--TSTGNYYSSSDVITNYDVNEIYTRTIEDKNGE 355 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 + SI + ++ +++ G ++I V+ A G D I++ + F Sbjct: 356 ISNKSITIFID--------FQNSKVGDSQELRSQIKTAVATAIGTPE---DNISLVDIQF 404 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL-HALRRLHNIDDAKKG 472 + ++ R VI +V +LV + +R+ + + +K Sbjct: 405 NRDLEAMRADIEYQLQLRRQRITNIVIAIIVIAFVMMLVILIARARRVRKASQLVEERKR 464 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 E+ + + V + + Sbjct: 465 ELESRVEEAMKERGVEVEEVSPEQERF-----------------------------REIA 495 Query: 533 HMIEINEERFAKILRKWAR 551 + E N + A I++ W + Sbjct: 496 TLAENNPDEVADIIKSWLK 514 >gi|218681104|ref|ZP_03529001.1| flagellar MS-ring protein [Rhizobium etli CIAT 894] Length = 282 Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats. Identities = 168/273 (61%), Positives = 215/273 (78%), Gaps = 2/273 (0%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 +IL V V I + +AA FVN P + LYV L+ D+N+IS+AL+EANI+F++ +GSS Sbjct: 1 MILGGVGAVSIAIVLAAALFVNKPAQETLYVGLDQPDLNQISMALAEANINFQVGTDGSS 60 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 ISVP+ M GKAR+ LA +GLP +S+N+GYELFD V S GLTSFMQE+TRVRALEGEIART Sbjct: 61 ISVPAGMTGKARLMLAERGLP-NSANAGYELFDNVGSLGLTSFMQEVTRVRALEGEIART 119 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNL 202 IQSISGI AARVHIVMP++G+FRK +PTASVMIRA + +A +IRHLVA+AVP L Sbjct: 120 IQSISGITAARVHIVMPEVGNFRKQEQKPTASVMIRASAVTGRSAATSIRHLVASAVPGL 179 Query: 203 DMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSA 261 D+ DVT+LDS G+LL + ++ + L +SL IVQ +Q E+E NI+KALA FLG+DNFRS+ Sbjct: 180 DVDDVTILDSAGQLLASGDDASNSSLNRSLGIVQNVQQEVESNIDKALAPFLGMDNFRSS 239 Query: 262 VVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 V A+LN D QQI+E YDP+SKVERS+R +K+A Sbjct: 240 VTADLNTDAQQIQETTYDPESKVERSVRSTKEA 272 >gi|311068142|ref|YP_003973065.1| flagellar MS-ring protein [Bacillus atrophaeus 1942] gi|310868659|gb|ADP32134.1| flagellar MS-ring protein [Bacillus atrophaeus 1942] Length = 530 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 108/576 (18%), Positives = 219/576 (38%), Gaps = 69/576 (11%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + ++ +F+ + + +T+ +++ S I+L F +S LY L + Sbjct: 1 MQLKNKTSEFWNNRS---KTQKVLMISSFAAIIILITVISIFSSSEKMVPLYKDLSAEEA 57 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +I L + +SD G+ I VP V ++ LAA+GLP + S Y F + F Sbjct: 58 GQIKEELDAKKVPSELSDGGTVIKVPEEQVDTLKVQLAAEGLPKTGS-IDYSFFGQNAGF 116 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRA 179 GLT ++ +V A + E++ I + GI ++V I +P F + + +AS++++ Sbjct: 117 GLTDNEFDMLKVEATQTELSNLINEMKGIKNSKVMINLPKDAVFVGEEQSTASASIVLQM 176 Query: 180 INP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ-- 235 + HLV+ +VPNL ++ ++D + + S S Q Sbjct: 177 NPGYTLDQSQVNGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSNGDAGSYADSYSSQQGI 236 Query: 236 --AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP------DSKVERS 287 ++ +I+ ++ L +G D +V +++ + E + +P + + Sbjct: 237 KTQVEKDIQKHVQTLLGTMMGQDKVVVSVTTDIDFTKENRTEDLVEPVDKENMEGIAVSA 296 Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 ++++ Q + +A T +++ + + N DK + NYE+N Sbjct: 297 EKVAETYQGDNAANGGTAGTGDEDTTGYA--QTDENSENGNYDKSSNKINYEVNRIHKEI 354 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT-- 405 YK+ L I V+V S ++ + +I V + I+ D Sbjct: 355 AESPYKVRDLGIQVMVEPPDAKNTASLSTER---QDDIQKILATVVRTS-IDKDSQDQEL 410 Query: 406 --------ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457 I ++ F ++ + + S + I V+ A + ++ +LV Sbjct: 411 TDEEINNKIVLSVQPFDGKVSLDTASEKSSVLPIWVYIAGGVLLAAIIVLIIMLV----- 465 Query: 458 HALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS 517 R ++ + E T P + I L N++ ++ Sbjct: 466 ----RKKRSNEDEYEEW----------------TYETPQEPINLPDINEEESETEETVR- 504 Query: 518 RINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 +L M + E FAK+LR W + Sbjct: 505 ----------RKQLEKMAKDKPEDFAKLLRSWLTED 530 >gi|255022056|ref|ZP_05294062.1| Flagellar M-ring protein fliF [Acidithiobacillus caldus ATCC 51756] gi|254968542|gb|EET26098.1| Flagellar M-ring protein fliF [Acidithiobacillus caldus ATCC 51756] Length = 599 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 125/588 (21%), Positives = 238/588 (40%), Gaps = 46/588 (7%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 ++ S R R+ IL + LV + + V+ Y +Y L + A Sbjct: 14 FRNWWHSRN--QRQRLTILGGIALV-LAASLGIGEAVSHTSYAVVYSGLSPQTGGSVIAA 70 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L + I FR+ DNG+ I VP + + R+ LA QGLP+ ++++ + + G +SF+ Sbjct: 71 LQKGGIPFRLLDNGNVIEVPKADAARVRLQLAEQGLPAQATSALWHQL-QNEKLGTSSFV 129 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 + T +RALE +++ I+SI G+ AA V++ +P+ F + P A+V ++ + Sbjct: 130 EHTTYIRALEAGLSKDIESIQGVEAATVNLAIPNRTPFLERMPSPKAAVTLKLAPGMMLT 189 Query: 187 SAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN 244 + I HLVA++VP L G VTV+D G+ LTA L + Q ++ Sbjct: 190 QEQVYGITHLVASSVPGLKAGSVTVVDQYGRALTAKPTGSQSSAI-LRLQQRVESAYRKQ 248 Query: 245 INKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 I LA + G N R AV A +++ Q + Y V ++ S+ + S +S Sbjct: 249 IVDLLAPIVGGKRNLRVAVDANIDLSHTQKSFVTYGMGHVVTAAVESSR-TKGSASSSTF 307 Query: 304 SAVTVEQNMPHVSDRK---VPLPRSLEN------------TDKKEEQSNYEINTKSIATT 348 N P + + P + + + ++ +Y ++ T Sbjct: 308 GIPGALSNQPPGNPQAPITAPATSAAPGLTLQEIRAMIPRSSQANQRFHYVLDKTVGFTK 367 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR------ 402 + ++L LS++V++N ++ SA + S ++ ++ ++A S+R Sbjct: 368 GEPWRLTSLSVSVLINGKSISPTSAVSA-KPVSASTVSGVSAATTSAVRPASKRRTLAGI 426 Query: 403 ---GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF------LVGTLLVT 453 G + + N + S + +L I L + V + Sbjct: 427 PEYGPKTLLQLKRMVTNTIHASAPQGTVVLSVLPYERPAPIPHLPWWRRISPWVVWSRLE 486 Query: 454 FLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR 513 + L + L A + K+I S P S A ++G D + S S Sbjct: 487 WFLLGLIALLLFRKLAVEFMKQRKTIFSQQPSSDASSSGEDAPDKGRSNVPPVQNVSPSI 546 Query: 514 NLQ------SRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 L + ++ +++ + +I + R +++R+W + E Sbjct: 547 PLDHATLDLNGVSQASLEENLNTIKELIRSDTVRAVEVIREWIGNLGE 594 >gi|321315387|ref|YP_004207674.1| flagellar MS-ring protein [Bacillus subtilis BSn5] gi|320021661|gb|ADV96647.1| flagellar MS-ring protein [Bacillus subtilis BSn5] Length = 531 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 101/575 (17%), Positives = 225/575 (39%), Gaps = 66/575 (11%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + ++ +F+K+ + L + +++ S + I++ + F ++ LY L + Sbjct: 1 MQMKNKTSEFWKNRSKLQK---ILMVSALAAIIIIGIIISVFASNSKMAPLYKDLSAEEA 57 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +I L + +S+ G+ ISVP V ++ +AA+GLP + S Y F + F Sbjct: 58 GQIKEELDAKKVPNELSNGGTVISVPEDQVDSLKVQMAAEGLPKTGS-IDYSFFGQNAGF 116 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRA 179 GLT ++ +V+A + E++ I + GI +++V I +P F + + +AS++++ Sbjct: 117 GLTDNEFDMVKVKATQTELSNLINEMDGIKSSKVMINLPKDAVFVGEEQSAASASIVLQI 176 Query: 180 INP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ-- 235 + HLV+ +VPNL ++ ++D ++ + S S Q Sbjct: 177 QPGYTLDQSQINGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSDSDAGSYADSYSSQQGI 236 Query: 236 --AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP------DSKVERS 287 ++ +I+ ++ L +G D +V A+++ + E + +P + + Sbjct: 237 KSQVEKDIQKHVQSLLGTMMGQDKVVVSVTADIDFTKENRTEDIVEPVDKENMEGIAVSA 296 Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 ++S+ Q + +A T E+++ + N +K + NYE+N Sbjct: 297 EKVSETYQGDGAANGGTAGTGEEDVTNYKADGENTESG--NYEKNSNKINYEVNRIHKEI 354 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 YK+ L I V+V S + + D ++ +V + + + ++ Sbjct: 355 AESPYKVRDLGIQVMVEPPDAKNTASLSTE--RQDDIQKILSTVVRTSLDKDETQNQNLS 412 Query: 408 ---------ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 ++ F ++ T + S + + + V+ A + ++ +L+ Sbjct: 413 DADINNKIVVSVQPFDGKVNLDTNTEKSSGIPLWAYIVGGVLIAAIIVLIIMLI------ 466 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 +P + I L N++ + +++ Sbjct: 467 -------------------RKKRAQEDEFEEYEYEVPQEPINLPDINEEENETAESVR-- 505 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 +L M + E FAK+LR W + Sbjct: 506 ---------RKQLEKMAKDKPEDFAKLLRSWLAED 531 >gi|289670544|ref|ZP_06491619.1| flagellar MS-ring protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 335 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 74/315 (23%), Positives = 143/315 (45%), Gaps = 6/315 (1%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ Q+F SL TR L + ++I + + +A F+ P Y +LY L+ + Sbjct: 15 EKAGQWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAA 74 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L A I ++I +ISVP + AR+ LA GL + G+EL +K FG++ Sbjct: 75 DLLRTAQIPYKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQ 134 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 F++ ALE E++RTI ++ + ARVH+ +P +F + +ASV++ Sbjct: 135 FVENARYQHALETELSRTISTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQG 194 Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240 + +AI +LVA+++P++ VTV+D +G++L+ + + V+ + Sbjct: 195 LERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESS 254 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I + L G +++ + +Y+ + RS +++ + + + Sbjct: 255 YNQRIRELLEPMTGPGRVNPETSVDMDFSVVEEARELYNGEPAKLRSEQVNDTS--TTAT 312 Query: 301 QPESAVTVEQNMPHV 315 P+ N P Sbjct: 313 GPQGPPGATSNSPGQ 327 >gi|16078684|ref|NP_389503.1| flagellar MS-ring protein [Bacillus subtilis subsp. subtilis str. 168] gi|120324|sp|P23447|FLIF_BACSU RecName: Full=Flagellar M-ring protein gi|2633993|emb|CAB13494.1| flagellar basal-body M-ring protein [Bacillus subtilis subsp. subtilis str. 168] Length = 536 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 101/575 (17%), Positives = 224/575 (38%), Gaps = 66/575 (11%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + ++ +F+K+ + L + +++ S + I++ + F ++ LY L + Sbjct: 6 MQMKNKTSEFWKNRSKLQK---ILMVSALAAIIIIGIIISVFASNSKMAPLYKDLSAEEA 62 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +I L + +S+ G+ ISVP V ++ +AA+GLP + S Y F + F Sbjct: 63 GQIKEELDAKKVPNELSNGGTVISVPEDQVDSLKVQMAAEGLPKTGS-IDYSFFGQNAGF 121 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRA 179 GLT ++ +V+A + E++ I + GI ++V I +P F + + +AS++++ Sbjct: 122 GLTDNEFDMVKVKATQTELSNLINEMDGIKNSKVMINLPKDAVFVGEEQSAASASIVLQI 181 Query: 180 INP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ-- 235 + HLV+ +VPNL ++ ++D ++ + S S Q Sbjct: 182 QPGYTLDQSQINGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSDSDAGSYADSYSSQQGI 241 Query: 236 --AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP------DSKVERS 287 ++ +I+ ++ L +G D +V A+++ + E + +P + + Sbjct: 242 KSQVEKDIQKHVQSLLGTMMGQDKVVVSVTADIDFTKENRTEDIVEPVDKENMEGIAVSA 301 Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 ++S+ Q + +A T E+++ + N +K + NYE+N Sbjct: 302 EKVSETYQGDGAANGGTAGTGEEDVTNYKADGENTESG--NYEKNSNKINYEVNRIHKEI 359 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 YK+ L I V+V S + + D ++ +V + + + ++ Sbjct: 360 AESPYKVRDLGIQVMVEPPDAKNTASLSTE--RQDDIQKILSTVVRTSLDKDETQNQNLS 417 Query: 408 ---------ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 ++ F ++ T + S + + + V+ A + ++ +L+ Sbjct: 418 DADINNKIVVSVQPFDGKVNLDTNTEESSGIPLWAYIVGGVLIAAIIVLIIMLI------ 471 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 +P + I L N++ + +++ Sbjct: 472 -------------------RKKRAQEDEFEEYEYEVPQEPINLPDINEEENETAESVR-- 510 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 +L M + E FAK+LR W + Sbjct: 511 ---------RKQLEKMAKDKPEDFAKLLRSWLAED 536 >gi|221309496|ref|ZP_03591343.1| flagellar MS-ring protein [Bacillus subtilis subsp. subtilis str. 168] gi|221313821|ref|ZP_03595626.1| flagellar MS-ring protein [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318745|ref|ZP_03600039.1| flagellar MS-ring protein [Bacillus subtilis subsp. subtilis str. JH642] gi|221323016|ref|ZP_03604310.1| flagellar MS-ring protein [Bacillus subtilis subsp. subtilis str. SMY] Length = 531 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 101/575 (17%), Positives = 224/575 (38%), Gaps = 66/575 (11%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + ++ +F+K+ + L + +++ S + I++ + F ++ LY L + Sbjct: 1 MQMKNKTSEFWKNRSKLQK---ILMVSALAAIIIIGIIISVFASNSKMAPLYKDLSAEEA 57 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +I L + +S+ G+ ISVP V ++ +AA+GLP + S Y F + F Sbjct: 58 GQIKEELDAKKVPNELSNGGTVISVPEDQVDSLKVQMAAEGLPKTGS-IDYSFFGQNAGF 116 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRA 179 GLT ++ +V+A + E++ I + GI ++V I +P F + + +AS++++ Sbjct: 117 GLTDNEFDMVKVKATQTELSNLINEMDGIKNSKVMINLPKDAVFVGEEQSAASASIVLQI 176 Query: 180 INP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ-- 235 + HLV+ +VPNL ++ ++D ++ + S S Q Sbjct: 177 QPGYTLDQSQINGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSDSDAGSYADSYSSQQGI 236 Query: 236 --AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP------DSKVERS 287 ++ +I+ ++ L +G D +V A+++ + E + +P + + Sbjct: 237 KSQVEKDIQKHVQSLLGTMMGQDKVVVSVTADIDFTKENRTEDIVEPVDKENMEGIAVSA 296 Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 ++S+ Q + +A T E+++ + N +K + NYE+N Sbjct: 297 EKVSETYQGDGAANGGTAGTGEEDVTNYKADGENTESG--NYEKNSNKINYEVNRIHKEI 354 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 YK+ L I V+V S + + D ++ +V + + + ++ Sbjct: 355 AESPYKVRDLGIQVMVEPPDAKNTASLSTE--RQDDIQKILSTVVRTSLDKDETQNQNLS 412 Query: 408 ---------ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 ++ F ++ T + S + + + V+ A + ++ +L+ Sbjct: 413 DADINNKIVVSVQPFDGKVNLDTNTEESSGIPLWAYIVGGVLIAAIIVLIIMLI------ 466 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 +P + I L N++ + +++ Sbjct: 467 -------------------RKKRAQEDEFEEYEYEVPQEPINLPDINEEENETAESVR-- 505 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 +L M + E FAK+LR W + Sbjct: 506 ---------RKQLEKMAKDKPEDFAKLLRSWLAED 531 >gi|306820113|ref|ZP_07453761.1| flagellar M-ring protein FliF [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551891|gb|EFM39834.1| flagellar M-ring protein FliF [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 521 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 103/571 (18%), Positives = 228/571 (39%), Gaps = 68/571 (11%) Query: 1 MAILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLE 56 M +L+ + S + +I+ + I+V +++ ++ + Y LY L+ Sbjct: 1 MYVLENINSVRNSINSYLEKYTKKQIITVGISIVVILIVMVSMIMYFTRTKYVTLYSNLD 60 Query: 57 VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 ++ +++++ +L + +++ +SISVP S K I LA Q +P++ + + Sbjct: 61 LNTMSKVTQSLDSMGVQYKVDSQ-NSISVPESSRNKIMIDLAGQNIPNAKFD--FSNLIN 117 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARPTAS 174 +NS ++ + + AL +I+ I+SI + A+V + +P F + +P AS Sbjct: 118 MNSMFMSDDEKNTAKQYALTNQISSIIESIPAVEKAQVTLAIPKNSEFVLSENKQQPKAS 177 Query: 175 VMIRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGK 229 VM+ + S I +VA +V L+ +VT+ G++L N +N G Sbjct: 178 VMLILKSGSQLSQDSINGIASMVAGSVEGLEPQNVTIHGPNGQILNQNSTGQNANMQTGT 237 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD-----SKV 284 +L + + ++ +IE ++ LA G +NF V +LN D + + + P S + Sbjct: 238 NLEMQEKVKRDIENSLQNFLAPMFGYNNFSVMVSVKLNFDNETTQTKTFAPPVEGETSGL 297 Query: 285 ERSIRLSKDAQRSETS--QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINT 342 RS + K+ ++ + + ++ + ++ E NYE+N Sbjct: 298 VRSEQQQKEQVENKNNALGTPGVTSNNNEAGGTTNYVTVDENGNSSYNRSESTVNYELNE 357 Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402 ++ ++++V++NK L D +I +++ ATG++++ Sbjct: 358 IVKNVEKARGTIDSVTVSVILNKDTLEG-------GELSDEKRTQIVNLITTATGLDTK- 409 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 + + + F + ++ Q S + + A + AL+ L+ L + LRR Sbjct: 410 --AVEVFAESFNKTDELSAQNTQGSI--PMWQWIAIAVIALIPLIL------LTVTMLRR 459 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 + ++ + + + A+ G+ Sbjct: 460 SKAKNKKEELKKLENNAIRQQEEIEAIEIGM----------------------------- 490 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + +I+ N E ++L+ W E Sbjct: 491 KESGKKKSIEDLIQKNPEIVTQLLKTWIEEE 521 >gi|157738171|ref|YP_001490855.1| flagellar M-ring protein FliF [Arcobacter butzleri RM4018] gi|157700025|gb|ABV68185.1| flagellar M-ring protein FliF [Arcobacter butzleri RM4018] Length = 574 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 106/433 (24%), Positives = 201/433 (46%), Gaps = 30/433 (6%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVN------SPHYDNLYVKLEV 57 +DQLL+F + R +IL S + ++ + + + +Y + L Sbjct: 1 MDQLLKFINNLNKSQR---IILVSGFALLFIIVVGFLIYSSIKAEDKKLNY-TIASNLTQ 56 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSM--VGKARIHLAAQGLPSSSSNSGYELFD 115 +DV R S L + I F +S +G+++++ +S + A+I L +++ + G+E+F+ Sbjct: 57 ADVMRASEELEASGIQFVVSGSGNNLTLKTSQEFINIAKIKLVTSE-AATNKHVGWEIFE 115 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 K +S G T+F ++ +RALEGE++R+++S+SG++ A V I +P F + A TAS Sbjct: 116 K-SSLGTTNFENKVKYLRALEGELSRSLESLSGVLKANVKIAIPKETIFTEKRADTTASA 174 Query: 176 MIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSL 231 +I K + I++ +A+AVP+L ++ ++D G LL N E N Sbjct: 175 VISLKQGIHLTKKQIDGIKNFIASAVPDLKQENIQLIDQDGNLLEQNIDEENTIKSAAQN 234 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 I+ + E I L +G + V L+ + + E +Y P+ + RS ++ Sbjct: 235 KYKDKIEKDYEAKIISLLEPVVGTGRVVAKVNVALDFVKKDVEEEIYSPEGSI-RSQQVI 293 Query: 292 KDAQRSETSQP--ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 ++ ++ P V+ N+ V + N++ +NYEI+ K I+ Sbjct: 294 ENTNNTQGMLPNNGGVAGVDNNI-QVPTTVGDGSKISSNSEGSNTVTNYEISRKVISQKD 352 Query: 350 DNYK-LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 NY ++R++ +V + L D ++A + + A G + RGDTIT+ Sbjct: 353 GNYTNIKRITASVTFDSAILK-------DHPDKGEFIASLESLSGDAIGYDRGRGDTITV 405 Query: 409 TSMDFLENQLFNS 421 F+ + N Sbjct: 406 KDFKFVGAKALNE 418 >gi|315636314|ref|ZP_07891564.1| flagellar M-ring protein FliF [Arcobacter butzleri JV22] gi|315479403|gb|EFU70086.1| flagellar M-ring protein FliF [Arcobacter butzleri JV22] Length = 574 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 105/433 (24%), Positives = 200/433 (46%), Gaps = 30/433 (6%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVN------SPHYDNLYVKLEV 57 +DQLL+F + R +IL S + ++ + + + +Y + L Sbjct: 1 MDQLLKFINNLNKSQR---IILVSGFALLFIIVVGFLIYSSIKAEDKKLNY-TIASNLTQ 56 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSM--VGKARIHLAAQGLPSSSSNSGYELFD 115 +DV R S L + I F +S +G+++++ +S + A+I L +++ + G+E+F+ Sbjct: 57 ADVMRASEELEASGIQFVVSGSGNNLTLKTSQEFINIAKIKLVTSE-AATNKHVGWEIFE 115 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 K +S G T+F ++ +RALEGE++R+++S+SG++ A V I +P F + A TAS Sbjct: 116 K-SSLGTTNFENKVKYLRALEGELSRSLESLSGVLKANVKIAIPKETIFTEKRADTTASA 174 Query: 176 MIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSL 231 +I K + I++ +A+AVP+L ++ ++D G LL N E N Sbjct: 175 VISLKQGIHLTKKQIDGIKNFIASAVPDLKQENIQLIDQDGNLLEQNIDEENTIKSAAQN 234 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 I+ + E I L + + V L+ + + E +Y P+ + RS ++ Sbjct: 235 KYKDKIEKDYEAKIISLLEPVVETGRVVAKVNVALDFVKKDVEEEIYSPEGSI-RSQQVI 293 Query: 292 KDAQRSETSQP--ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 ++ ++ P V+ N+ V + N++ +NYEI+ K I+ Sbjct: 294 ENTNNTQGMLPNNGGVAGVDNNI-QVPTTVGDGSKISSNSEGSNTVTNYEISRKVISQKD 352 Query: 350 DNYK-LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 NY ++R++ +V + L D ++A + + A G + RGDTIT+ Sbjct: 353 GNYTNIKRITASVTFDSAVLK-------DHPDKGEFIASLESLSGDAIGYDRGRGDTITV 405 Query: 409 TSMDFLENQLFNS 421 F+ + N Sbjct: 406 KDFKFVGAKALNE 418 >gi|89098644|ref|ZP_01171526.1| flagellar M-ring protein [Bacillus sp. NRRL B-14911] gi|89086606|gb|EAR65725.1| flagellar M-ring protein [Bacillus sp. NRRL B-14911] Length = 528 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 105/569 (18%), Positives = 215/569 (37%), Gaps = 68/569 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + L +F++S T + + ++A +++ +++ AA LY L S+ I Sbjct: 9 FNPLKEFWQSRT---KKQKGLMAGSLILLLLIASAAVLLAGRTTMVPLYSNLSPSETGAI 65 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 +L I I+D GS+I VP +V ++ LAA+G+P S S Y F + G+T Sbjct: 66 KESLDGRGIASEIADGGSTIMVPEEVVDTLKVELAAEGIPKSGS-IDYSFFSQNAGIGMT 124 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG-ARPTASVMIRAINP 182 + ++ A++ E++ I+ I G+ A+V I +P+ G F +AS+++ Sbjct: 125 ENEFNVLKLDAMQTELSNLIKGIEGVNDAKVMINLPEKGIFINDQTEEASASIVLNTKPG 184 Query: 183 SV--YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQAI 237 + +++ HL++ +VPNL ++ V + + +N+ + L + + I Sbjct: 185 YQFETEQIKSLYHLISKSVPNLPTDNIVVTNQFFEYFDLENSNDTSGKTITAQLDVKKQI 244 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD-----SKVERSIRLSK 292 + +++ + L+ +G + +V A+++ + E + P + S + Sbjct: 245 ERDVQRQVQSMLSTLMGPEKVVVSVSADIDFTQENREENLVTPVDEENMEGIAISAKKIT 304 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 + + N +++ S + ++ EE N E+N Y Sbjct: 305 ETFTGSAEEAGGIAGTGDN--EITNYPGAAEGSNGDYERIEETINNEVNKIRKEIVESPY 362 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSA-----ATGI---NSRRGD 404 K+ L I V+V + S Q ++D ++ IV A G + D Sbjct: 363 KVRDLGIQVMVEPPTADDPT--SLPQERVDDITQILSTIVRTTIDKKAAGADLTDEDIAD 420 Query: 405 TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 + ++ F G + + V + LL+ FL + A R+ Sbjct: 421 KVVVSVQQF-------QGKTEFPEESAAVIPWWVYAIGGVLVAIILLLVFLFIRARRKSQ 473 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 + +V + + N++ + S Sbjct: 474 EEQAELEEQVEP----------------------VTIKDVNEEQETES------------ 499 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSE 553 +L M + E FAK+LR W + Sbjct: 500 SLRRKQLEKMAKEKPEDFAKLLRSWIAED 528 >gi|237751136|ref|ZP_04581616.1| flagellar M-ring protein [Helicobacter bilis ATCC 43879] gi|229373581|gb|EEO23972.1| flagellar M-ring protein [Helicobacter bilis ATCC 43879] Length = 563 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 103/572 (18%), Positives = 210/572 (36%), Gaps = 29/572 (5%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEV 57 AI QL K + IL+ V + + + + + L+ Sbjct: 5 AIFTQLQNLIKKLNRKQQIVILVTVVVFVAFLSYLIVSSLGSKKGDSVDGFGILFSAENP 64 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 +D L + NI +++ ++ ++I+VP V R LAAQG+ Y++F Sbjct: 65 ADAGSAISYLKQQNIPYKMIND-NTIAVPQDQVFVLRNELAAQGIIKG--RVDYDIF-NE 120 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 NSFG T ++ ++RA++G++ +T+ +++ I ARV I P F K A P+ASV + Sbjct: 121 NSFGATQSEFDVKKLRAIKGQLEKTLMALAPIQDARVEIAEPKDDVFVKTRAVPSASVAL 180 Query: 178 RAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKSLS 232 + + I++L+A + L +V ++D G L + E K+ + Sbjct: 181 TLRDGMTLTQNQIFGIQNLIANSFNGLKPENVIMVDQYGNPLNKRDEATIENEQAFKNFA 240 Query: 233 IVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + EI I ++L+ G D +V + + Q+ E +Y +S V Sbjct: 241 YKVQAEQEIANKIRQSLSRLAGGTDRMTVSVNLDYDFGKQESTEEIYSKESAVASESGKE 300 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + + P V N+ V D + E + + NY + K+ Sbjct: 301 IERKGLAPKDPGGVPGVINNIAEVKDLD---SNNREEYRESQFVKNYMPDKKTTTMRLQT 357 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSA-----DQGKIDSYLAEINKIVSAATGINSRRGDTI 406 +L+R+++ VV++ E + + LAEI KIV A++G + R D + Sbjct: 358 PQLKRMTVGVVIDGTYTEETNEETGFITMKYTPRSPEELAEIKKIVEASSGYDESRNDIV 417 Query: 407 TITSMDFLENQLFNSGTVQ-VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465 ++ + + ++ + L +++ +++ F + Sbjct: 418 SVIAGQLNAIGSGTPPLTNFEKVAQAVEKYLGPFMPLLRYVLVVIVLFFFYKKVIAPFAE 477 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 + P+ N + ++ ++ Sbjct: 478 RMLEVHE----EEETEKQPLFDFDDDDDTLNRANEMRKRVEEQLGIGGGFNE--DAVKYD 531 Query: 526 QSDLRLLHMIEINEERFAKILRKWARSEIEDR 557 ++ + + A + + R EIE + Sbjct: 532 VLLEKIKEAVRTKPDEIAGLFQALIRDEIEMK 563 >gi|217076889|ref|YP_002334605.1| flagellar M-ring protein FliF [Thermosipho africanus TCF52B] gi|217036742|gb|ACJ75264.1| flagellar M-ring protein FliF [Thermosipho africanus TCF52B] Length = 534 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 114/558 (20%), Positives = 223/558 (39%), Gaps = 45/558 (8%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + F+K + +L L IL+ ++L + +N+P Y L +D I Sbjct: 11 FSKFPDFWKGLKKNQKITMLSLLVAILIAVVLTVI----LNAPKYVLLISANNETDAGAI 66 Query: 64 SVALSEANIDFRISDNGSSISVPSS-MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 L I +++ G+ I +PSS V + R+ LA+ SS+ G+EL D+ +SFG Sbjct: 67 IQQLEAQGIPYKVEA-GNRIFIPSSYNVYEVRMKLASS-GALGSSSKGFELLDQ-SSFGA 123 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK-IGARPTASV--MIRA 179 TSF +++ RAL+GE+ RTI +I+G+ ARVH+ +P + + A ASV ++ Sbjct: 124 TSFDKQVNYQRALQGELERTIATINGVKFARVHLTLPKYTYYVRGEMAETRASVQLVLDP 183 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA---NEMERNILGKSLSIVQA 236 + + I +L+ AV L +V V+D+ G+ L+ + + + Sbjct: 184 GVSLSKEQIKGIIYLLTGAVEGLKPENVKVVDNYGRALSDLVNFDDNTVAASTKVELKMQ 243 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY-DPDSKVERSIRLSKDAQ 295 ++ + I AL G +LN + Y P + RS + ++ + Sbjct: 244 LESYYKKKIQPALETVFGFGTVEVIPDVKLNWQKAEKTITTYSTPKGGLIRS-QETESEK 302 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN-YKL 354 + V E N+P + + S+ +K + +NYE+N +N ++ Sbjct: 303 STTAPADGGPVGTESNIPTTYYQSIEG-SSVTLYEKNHQITNYELNQIVENIVQNNEGEI 361 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 E +S++V+++ + K+ S + I K ++A + ++ + ++ + F Sbjct: 362 ENISLSVIIDSSSTVFNKISKEEINKMVSDV--IEKSIAANSSPSAI---SYSLAFIPFS 416 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 ++ ++ A + L+ T+LV F L +L + K Sbjct: 417 RE----MEEEFSKIIEQQTKQKEFFYKATLLLIATILVFFGTYGFLLQLKKVKSRKLVLQ 472 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 K + TG + I S ++ + + +Y + Sbjct: 473 RYKMLEEEVQKVMEEKTGEEA----------EQILSEAQKVIEELRNYAK--------QL 514 Query: 535 IEINEERFAKILRKWARS 552 + E A I++ W Sbjct: 515 AVKSPEEVASIIKIWISE 532 >gi|296103640|ref|YP_003613786.1| flagellar M-ring protein [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058099|gb|ADF62837.1| flagellar M-ring protein [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 302 Score = 273 bits (697), Expect = 8e-71, Method: Composition-based stats. Identities = 87/275 (31%), Positives = 142/275 (51%), Gaps = 5/275 (1%) Query: 14 GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73 +SL + L+L + + +A F+ P Y L+ + + I LS+ N+ Sbjct: 20 LSSLRGSPKLLLVICGAAALSVIIALMFWAKEPDYRVLFSNISDEEGGAIVAQLSQLNVP 79 Query: 74 FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 +RI G I VP+S V + R+ LA QGLP G+EL D+ FG++ F +++ R Sbjct: 80 YRIDTPGGVIMVPASQVHEVRMKLAQQGLPKGGG-VGFELLDQE-KFGVSQFTEQVNYQR 137 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAI 191 ALEGE+ARTI+++ I +A VH+ P F + +PTASV + + AI Sbjct: 138 ALEGELARTIENLGPIQSACVHLATPKPSMFVREQKKPTASVTVNLLQGRTLDDSQVVAI 197 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAA 251 HL+++AV L G VT++D G LLT + + R + L I+ + + I + LA Sbjct: 198 THLISSAVTGLAAGSVTIVDQRGNLLTQSGL-RGLQTAHLKYTSEIETDYQQRIQRILAP 256 Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVER 286 +G +N R+ V A+++ Q+ + Y P+S E+ Sbjct: 257 LVGDENIRAQVTAQIDFTEQEQTQEQYQPNSDPEK 291 >gi|333004041|gb|EGK23575.1| flagellar M-ring protein domain protein [Shigella flexneri K-272] gi|333017814|gb|EGK37121.1| flagellar M-ring protein domain protein [Shigella flexneri K-227] Length = 261 Score = 273 bits (697), Expect = 8e-71, Method: Composition-based stats. Identities = 77/258 (29%), Positives = 131/258 (50%), Gaps = 8/258 (3%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 + L++ + + +++ S + + +A + +P Y L+ L D I Sbjct: 9 KSLEWLNRLRANPKIPLIVTGS---AAVAVMVALILWAKAPDYRTLFSNLSDQDGGAIVS 65 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F Sbjct: 66 QLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQF 123 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 124 SEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRAL 183 Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIE 242 AI HLV++AV L G+VT++D G LLT +N R++ L ++ I+ Sbjct: 184 DEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQ 243 Query: 243 MNINKALAAFLGVDNFRS 260 I L+ +G N + Sbjct: 244 RRIEAILSPIVGNGNIHA 261 >gi|332756092|gb|EGJ86445.1| flagellar M-ring protein domain protein [Shigella flexneri 4343-70] gi|333003272|gb|EGK22818.1| flagellar M-ring protein domain protein [Shigella flexneri K-218] Length = 261 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 77/258 (29%), Positives = 131/258 (50%), Gaps = 8/258 (3%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 + L++ + + +++ S + + +A + +P Y L+ L D I Sbjct: 9 KSLEWLNRLRANPKIPLIVTGS---AAVAVMVALILWAKAPDYRTLFSNLSDQDGGAIVS 65 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F Sbjct: 66 QLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQF 123 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 124 SEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRAL 183 Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIE 242 AI HLV++AV L G+VT++D G LLT +N R++ L ++ I+ Sbjct: 184 DEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQ 243 Query: 243 MNINKALAAFLGVDNFRS 260 I L+ +G N + Sbjct: 244 QRIEAILSPIVGNGNIHA 261 >gi|299066535|emb|CBJ37725.1| putative Flagellar M-ring protein FliF [Ralstonia solanacearum CMR15] Length = 506 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 94/423 (22%), Positives = 171/423 (40%), Gaps = 32/423 (7%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + ++ ++L R ++ A I V + +F ++ Y L+ L D + Sbjct: 8 IRDLWEGLSALARAGLVAGAICIAVAMGVF---SYWALHTDYQVLFSDLTPQDSAAMVAE 64 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L + +++ D G+SI V V K RI L + LP + G ELF + FG+T F Sbjct: 65 LDRLKVPYQLGDQGTSILVARDQVYKTRIKLMGKDLPLHGA-VGLELF-NNSDFGMTEFA 122 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY- 185 Q+I RAL+GE+ RTI S+S I RVH+ +P+ G F++ G+R A+V + V Sbjct: 123 QKINYQRALQGELTRTILSLSEIHDVRVHLALPEQGLFKQAGSRAKAAVTLTLKQGQVLR 182 Query: 186 -KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQAIQHEI 241 + I+ LV+A+VP + DVT++D G L + E E + L + + ++ + Sbjct: 183 PEQITGIQRLVSASVPGIATQDVTIVDQHGVALTRASGAEGEIDATSGRLDLKKETENYL 242 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + + L G ++V L+MD Q P + + E+ + Sbjct: 243 QRKVADVLERSFGPGQSIASVDVTLDMDRIQTTTEDVIPAASRTGHTPSGVVTRERESVR 302 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 A D +V + +++Y + + + R+ + Sbjct: 303 DNGAP---------LDTRVADASGGARGGSSQRETDYAVGRRVEQVVSQPGSVRRIQVVA 353 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 +V + ++V+AA G + RGD++ + + L Q Sbjct: 354 MV-------------RTPLDADQQERLRRLVAAAAGASFERGDSVVVQPLGALVTQGAVD 400 Query: 422 GTV 424 Sbjct: 401 APA 403 >gi|310659045|ref|YP_003936766.1| flagellar m-ring protein flif [Clostridium sticklandii DSM 519] gi|308825823|emb|CBH21861.1| Flagellar M-ring protein FliF [Clostridium sticklandii] Length = 521 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 116/568 (20%), Positives = 225/568 (39%), Gaps = 62/568 (10%) Query: 1 MAILDQLLQFFKSGT-SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 M + + + + ++L + + +++ A F+ P+Y LY +++ Sbjct: 1 MDFFNDIKDKTGKLSEKYSNKQKIMLGGLAVGLVVITTAMIFYFTRPNYVTLYRDIDLKT 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + ++ L E I +R++ + +SISVP + + KA++ LA GLP ++ + Y NS Sbjct: 61 ASEVTSQLDELKIPYRLNQD-NSISVPDTYINKAKVDLAGAGLPEATFD--YNDLINRNS 117 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMI 177 ++ + R AL+ EIA IQSI G+ A V++ +P F ++ ASV + Sbjct: 118 MFMSDDEKNQARNYALQNEIANVIQSIPGVKKAFVNLSIPKTQEFILQENKIDAKASVFL 177 Query: 178 RAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLS 232 + + I LVA +V L +VTV G++L + + N + +L Sbjct: 178 NLDDKISLDQTSIQGITMLVANSVEGLKPENVTVHGPNGQVLNEDSTDTNNILVSQTNLE 237 Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP------DSKVER 286 + ++ ++E ++N LA G N +LN DT + + P D V Sbjct: 238 LQNKVKLDVEKSLNNFLAPIYGYGNVSVMASVKLNFDTDNTQSKSFAPPIEGETDGLVRS 297 Query: 287 SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346 + + S+ + V V + N DK E NYE+N Sbjct: 298 LQENIEKVENSQEAVGNPGVDANAEEEVVDYATLDPNALNSNYDKNERIVNYELNEIVKT 357 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 ++E L++AVV+NK L + EI +++AATG+ ++ ++ Sbjct: 358 VEKAKGQIENLTVAVVLNKDSLEG-------GELTEEQRTEIASLINAATGLETK---SV 407 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLL-VTFLGLHALRRLHN 465 I + F ++ +Q + D + + + F V L+ + +G++ Sbjct: 408 EIYAQSFNQD-------IQNALSDTAGQEGIPIWMWIAFAVIALIPILAIGIYM------ 454 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 I +K + L P SA++ + + + S Sbjct: 455 IMKRRKEKKKEAEKLLEIPQESAISKAAVEQIELEIKESG-------------------- 494 Query: 526 QSDLRLLHMIEINEERFAKILRKWARSE 553 + +I+ N E ++L+ W + Sbjct: 495 -RKKSIESLIDTNPEIVTQLLKTWLDED 521 >gi|322382303|ref|ZP_08056210.1| flagellar MS-ring protein-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153656|gb|EFX46031.1| flagellar MS-ring protein-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 527 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 102/566 (18%), Positives = 229/566 (40%), Gaps = 54/566 (9%) Query: 3 ILDQLLQFF----KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 + +++ Q++ + + + L + + I+ + ++ Y + L+ + Sbjct: 1 MNEKIGQYWGRVKQYWNKYSKKTKITLIAAAVFMILTVGIISYNLSKTEYSTAFTNLQPN 60 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 I L + I +++S +G SI VP++ V + +I + ++GL N GY +FD+ Sbjct: 61 AAADIKAYLDQEKIPYKLSADGKSIGVPTAQVAEVKIAVESKGLNKGG-NVGYGIFDQSG 119 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMI 177 SFG T E+ ++ A++GE+ + I S I ++V I +P+ G F K + +ASV++ Sbjct: 120 SFGTTDNQFEMQKLNAMQGELQQLINSNQAIANSKVLINIPEQGVFLSKNEEKASASVVL 179 Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK-----S 230 + I +LV+ +V NL + ++T+ D G+ + ++ + + G Sbjct: 180 EVKQGYTLDQNQIDTIYNLVSHSVKNLPLDNITIADQFGQYMVPSKADGSPQGSTQVANQ 239 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD-PDSKVERSIR 289 + + + +++ NI LA G + VV+ +N D ++ +E + P+ ++ + Sbjct: 240 FQVKKQFESDMQRNIVNLLAPMYGQNKVVVNVVSTMNFDQKKTKEQLVSAPNQDEQKGLE 299 Query: 290 LS-KDAQRSETSQPESAVTVE-QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 +S ++ Q+S +S +A V V + +++ ++ NYE+N + Sbjct: 300 ISVQELQKSASSDGATAGGVAGSGTNDVPGYESTSNSGNSKSEENQKTVNYEVNRITNDI 359 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 Y ++ L+I V ++ + G+ + +++ + I K A +G+ + D Sbjct: 360 IRAPYVVKDLNITVAIDTKSVNGNPGKIENAELLENAMKGIVKTALADSGVEYEQAD--- 416 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 ++ ++ S + + + + L + + ALRR Sbjct: 417 ------IDKKVTIIPKELQSPSSTTASNLNNYLLYGGIGLAALALIAGTVFALRRRKK-- 468 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 + ++ DI + + + Q R Sbjct: 469 -----------------NLLEEEEEYITTGQQQMEYPTIDIENVTNDNQVR--------- 502 Query: 528 DLRLLHMIEINEERFAKILRKWARSE 553 +L + + E F +LR W E Sbjct: 503 -KQLETLAKKKPEEFVNLLRTWLVDE 527 >gi|333003033|gb|EGK22587.1| flagellar M-ring protein domain protein [Shigella flexneri VA-6] Length = 261 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 77/258 (29%), Positives = 131/258 (50%), Gaps = 8/258 (3%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 + L++ + + +++ S + + +A + +P Y L+ L D I Sbjct: 9 KSLEWLNRLRANPKIPLIVTGS---AAVAVMVALILWAKAPDYRTLFSNLSDQDGGAIVS 65 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F Sbjct: 66 QLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQF 123 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 124 SEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPSRAL 183 Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIE 242 AI HLV++AV L G+VT++D G LLT +N R++ L ++ I+ Sbjct: 184 DEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQ 243 Query: 243 MNINKALAAFLGVDNFRS 260 I L+ +G N + Sbjct: 244 RRIEAILSPIVGNGNIHA 261 >gi|255305272|ref|ZP_05349444.1| flagellar MS-ring protein [Clostridium difficile ATCC 43255] Length = 516 Score = 270 bits (690), Expect = 5e-70, Method: Composition-based stats. Identities = 114/571 (19%), Positives = 220/571 (38%), Gaps = 82/571 (14%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 I +Q+ + +SL + + L ++ + + + Y L+ +L+V D Sbjct: 8 KIKEQVAKSRTKISSLKKGTKIALGIGVVAICLALVFTAISASKNKYAVLFSELDVQDAA 67 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 IS L ID ++ GS+I VP + V K R+ LA + + G+ L D +S G Sbjct: 68 DISAELESKKIDTKVK--GSTIYVPRTEVDKLRLELAPS---LTGGSKGFALMDDSSSIG 122 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 LT +I + R ++GEI +TI+S + RVHI + F K +A+V + Sbjct: 123 LTDEEFQIKKQRMIQGEIEKTIKSFPQVEDTRVHITFGESSVFEKEAVPGSAAVYLMLKP 182 Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-------------I 226 + + +++ L++ +V N+ +V V+D+ LL+ +E Sbjct: 183 GTTLEKNQIKSVMALISGSVTNIPEKNVQVIDNKMNLLSEGILEDEDVDENNQPINGGIS 242 Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVER 286 + K+ + QA+ ++E +I + L G ++ V A+L+ DT + EI DPD + Sbjct: 243 VDKNKASEQALNKQLEKSILEMLEPIFGKGKVKATVNADLSFDTAEKTEIKIDPDKVAIK 302 Query: 287 SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346 R SK++ +S T+ + + D +E YE Sbjct: 303 ETR-SKNSSKSATNNVQGV--------DANMNNQGNNNGTNTEDSLDESFEYETGKIETH 353 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 T +L RL+ +V ++ V A++ IV+ A G++ RGDT+ Sbjct: 354 TIVAPGELNRLTASVAIDGKIAKGVQ-------------ADVEDIVNNAIGMDGARGDTL 400 Query: 407 TITSMDFLENQLFNSGTVQVSF-MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465 ++ SM F + + ++ + V +V + +L Sbjct: 401 SVVSMVFDPEGKAEAKQELEEIKKEGFKKNIIKAVIGAVAVVAIGAIGYLIYKKR----- 455 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 ++ +D ++D S S ++ + N + Sbjct: 456 ------------------------------SEQEDMDYEDEDYISKSDSVDRKDNPLLGD 485 Query: 526 QSDLRLLHMI----EINEERFAKILRKWARS 552 +L L + E ++ +I++ W Sbjct: 486 DPELTLEEAVKMYAEEKPDQVTEIIKTWLNE 516 >gi|157692300|ref|YP_001486762.1| flagellar MS-ring protein [Bacillus pumilus SAFR-032] gi|157681058|gb|ABV62202.1| flagellar basal-body M-ring protein [Bacillus pumilus SAFR-032] Length = 530 Score = 270 bits (690), Expect = 5e-70, Method: Composition-based stats. Identities = 101/563 (17%), Positives = 221/563 (39%), Gaps = 48/563 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + ++F+++ + L +IL++ V + I++ + F +S L+ L S+ Sbjct: 6 MQLRTKTVEFWRNRSKL--QKILMIGGVAALAIIITV-VSIFASSEKMVPLFKDLSESEA 62 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +I L I +++NG++I VP ++ LA+QGLP + Y F + F Sbjct: 63 GQIKQELDGKKIKSELANNGTTILVPEKQADSLKVTLASQGLPKTGK-IDYSFFANNSGF 121 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRA 179 GLT ++ +V A + E++ I +I GI ++V I +P F + + +AS++++ Sbjct: 122 GLTDNEFDVLKVDATQTELSNLINTIDGIKDSKVMINLPKDSVFVGEEQSNASASIVLQV 181 Query: 180 INP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIV 234 + + + HL++ +VPNL ++ ++D ++++ + + Sbjct: 182 ERGYTLSPQQVKGLYHLISKSVPNLKTENIVIMDQDSNYYDLNSSSDSYASGMDAQQQKK 241 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-DSKVERSIRLSKD 293 + I+ ++ I + L +G + +V +++ ++ +E + +P D + + I +S + Sbjct: 242 EEIEKNLQRKIQQLLGTMMGQEKVAVSVTTDIDFTEEKRKEDLVEPVDKENMQGIAVSAE 301 Query: 294 ---AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 S + + + N +K E++ NYE+N Sbjct: 302 KIAETYSGNGAAAGGTAGTGDDDVTNYQGADGANGSGNYEKSEDRINYEVNRIHKDIKES 361 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 YK+ + I +V +V +A+ + D ++ I+S + G +T Sbjct: 362 PYKIRDVGIQALVEPPTANDVNSLTAE--RQDDIKKILSTIISTSIDKEYTNGQALTQAD 419 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 + +N++ S + + + + I V++VG Sbjct: 420 L---DNKIVLSVSKLDGKQQTAAENPSNNIPIWVYIVG---------------------- 454 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 G + I V + + + + V K + Sbjct: 455 ----GVLLLAIIALIILLVRRRRKEEEEEFEFDERTPLHVPDIDTEPETEEMVRK---NQ 507 Query: 531 LLHMIEINEERFAKILRKWARSE 553 L M + E FAK+LR W + Sbjct: 508 LEKMAKDKPEDFAKLLRSWLSED 530 >gi|254973912|ref|ZP_05270384.1| flagellar MS-ring protein [Clostridium difficile QCD-66c26] gi|255091298|ref|ZP_05320776.1| flagellar MS-ring protein [Clostridium difficile CIP 107932] gi|255312956|ref|ZP_05354539.1| flagellar MS-ring protein [Clostridium difficile QCD-76w55] gi|255515715|ref|ZP_05383391.1| flagellar MS-ring protein [Clostridium difficile QCD-97b34] gi|255648809|ref|ZP_05395711.1| flagellar MS-ring protein [Clostridium difficile QCD-37x79] gi|260682028|ref|YP_003213313.1| flagellar MS-ring protein [Clostridium difficile CD196] gi|260685626|ref|YP_003216759.1| flagellar MS-ring protein [Clostridium difficile R20291] gi|306518924|ref|ZP_07405271.1| flagellar MS-ring protein [Clostridium difficile QCD-32g58] gi|260208191|emb|CBA60528.1| flagellar M-ring protein [Clostridium difficile CD196] gi|260211642|emb|CBE01895.1| flagellar M-ring protein [Clostridium difficile R20291] Length = 516 Score = 269 bits (689), Expect = 6e-70, Method: Composition-based stats. Identities = 114/571 (19%), Positives = 221/571 (38%), Gaps = 82/571 (14%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 I +Q+ + +SL + + L ++ + + + Y L+ +L+V D Sbjct: 8 KIKEQVAKSRTKISSLKKGTKIALGIGVIAICLALVFTAISASKNKYAVLFSELDVQDAA 67 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 IS L ID ++ GS+I VP + V K R+ LA + + G+ L D +S G Sbjct: 68 DISAELESKKIDTKVK--GSTIYVPRTEVDKLRLELAPS---LTGGSKGFALMDDSSSIG 122 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 LT +I + R ++GEI +TI+S + RVHI + F K +A+V + Sbjct: 123 LTDEEFQIKKQRMIQGEIEKTIKSFPQVEDTRVHITFGESSVFEKEAIPGSAAVYLMLKP 182 Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI------------- 226 + + +++ L++ +V N+ +V V+D+ LL+ +E Sbjct: 183 GTTLEKNQIKSVMALISGSVTNIPEKNVQVIDNKMNLLSEGILEDEDVDENNQPTNSLIN 242 Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVER 286 + K+ + QA+ ++E +I + L G ++ V A+L+ DT + EI DPD + Sbjct: 243 VDKNKASEQALNKQLEKSILEMLEPIFGKGKVKATVNADLSFDTAEKTEIKIDPDKVAIK 302 Query: 287 SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346 R SK++ +S T+ + + D +E YE Sbjct: 303 ETR-SKNSSKSATNNVQGV--------DANMNNQGNNNGTNTEDSLDESFEYETGKIETH 353 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 T +L RL+ +V ++ V A++ IV+ A G++ RGDT+ Sbjct: 354 TIVAPGELNRLTASVAIDGKIAKGVQ-------------ADVEDIVNNAIGMDGARGDTL 400 Query: 407 TITSMDFLENQLFNSGTVQVSF-MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465 ++ SM F + + ++ + +V +V + +L Sbjct: 401 SVVSMVFDPEGKAEAKQELEEIKKEGFKKNIIKAVIGVVAVVAIGAIGYLIYKKR----- 455 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 ++ +D ++D S S ++ + N + Sbjct: 456 ------------------------------SEREDMDYEDEDYISKSDSVDRKDNPLLGD 485 Query: 526 QSDLRLLHMI----EINEERFAKILRKWARS 552 +L L + E ++ +I++ W Sbjct: 486 DPELTLEEAVKMYAEEKPDQVTEIIKTWLNE 516 >gi|126697819|ref|YP_001086716.1| flagellar MS-ring protein [Clostridium difficile 630] gi|115249256|emb|CAJ67069.1| Flagellar M-ring protein FliF [Clostridium difficile] Length = 516 Score = 269 bits (689), Expect = 7e-70, Method: Composition-based stats. Identities = 111/571 (19%), Positives = 219/571 (38%), Gaps = 82/571 (14%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 I +Q+ + +SL + + L ++ + + + Y L+ +L+ D Sbjct: 8 KIKEQVAKSRTKISSLKKGTKIALGIGVIAICLALVFTAISASKNKYAVLFSELDAQDAA 67 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 IS L ID ++ GS+I VP + V K R+ LA + + G+ L D +S G Sbjct: 68 DISAELESKKIDTKVK--GSTIYVPRTEVDKLRLELAPS---LTGGSKGFALMDDSSSIG 122 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 LT +I + R ++GEI +TI+S + RVHI + F K +A+V + Sbjct: 123 LTDEEFQIKKQRMIQGEIEKTIKSFPQVEDTRVHITFGESSVFEKEAVPGSAAVYLMLKP 182 Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-------------I 226 + + +++ L++ +V N+ +V V+D+ LL+ +E Sbjct: 183 GTTLEKNQIKSVMALISGSVTNIPEKNVQVIDNKMNLLSEGILEDENVDENNQPINSGIS 242 Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVER 286 + K+ + QA+ ++E +I + L G ++ V A+L+ DT + EI DPD + Sbjct: 243 VDKNKASEQALNKQLEKSILEMLEPIFGKGKVKATVNADLSFDTAEKTEIKIDPDKVAIK 302 Query: 287 SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346 R SK++ +S + + + D +E YE Sbjct: 303 ETR-SKNSSKSAANNVQGV--------DANMNNQGNNNGTNTEDSLDESFEYETGKIETH 353 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 T +L RL+ +V ++ V A++ IV+ A G++ RGDT+ Sbjct: 354 TIVAPGELNRLTASVAIDGKIAKGVQ-------------ADVEDIVNNAIGMDGARGDTL 400 Query: 407 TITSMDFLENQLFNSGTVQVSF-MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465 ++ SM F + + ++ + +V ++ + +L Sbjct: 401 SVVSMVFDPEGKKEAKQELEEIKKEGFKKNIIKAVIGVVAVIAVGAIGYLIYKKR----- 455 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 ++ +D ++D S S ++ + N + Sbjct: 456 ------------------------------SEREDMDYEDEDYISKSDSVDRKDNPLLGD 485 Query: 526 QSDLRLLHMI----EINEERFAKILRKWARS 552 +L L + E ++ +I++ W Sbjct: 486 DPELTLEEAVKMYAEEKPDQVTEIIKTWLNE 516 >gi|255099415|ref|ZP_05328392.1| flagellar MS-ring protein [Clostridium difficile QCD-63q42] Length = 516 Score = 269 bits (688), Expect = 8e-70, Method: Composition-based stats. Identities = 115/571 (20%), Positives = 222/571 (38%), Gaps = 82/571 (14%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 I +Q+ + +SL + + L ++ + + + Y L+ +L+V D Sbjct: 8 KIKEQVAKSRTKISSLKKGTKIALGIGVIAICLALVFTAISASKNKYAVLFSELDVQDAA 67 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 IS L ID ++ GS+I VP + V K R+ LA +S + G+ L D +S G Sbjct: 68 DISAELESKKIDTKVK--GSTIYVPRTEVDKLRLELAPS---LTSGSKGFALMDDSSSIG 122 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 LT +I + R ++GEI +TI+S + RVHI + F K +A+V + Sbjct: 123 LTDEEFQIKKQRMIQGEIEKTIKSFPQVEDTRVHITFGESSVFEKEAVPGSAAVYLMLKP 182 Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-------------I 226 + + +++ L++ +V N+ +V V+D+ LL+ +E Sbjct: 183 GTTLEKNQIKSVMALISGSVTNIPEKNVQVIDNKMNLLSEGILEDENVNENNQPINSGIS 242 Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVER 286 + K+ + QA+ ++E +I + L G ++ V A+L+ DT + EI DPD + Sbjct: 243 VDKNKASEQALNKQLEKSILEILEPIFGKGKVKATVNADLSFDTAEKTEIKIDPDKVAIK 302 Query: 287 SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346 R SK++ +S T+ + + D +E YE Sbjct: 303 ETR-SKNSSKSATNNVQGV--------DANMNNQGNNNGTNTEDSLDESFEYETGKIETH 353 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 T +L RL+ +V ++ V A++ IV+ A G++ RGDT+ Sbjct: 354 TIVAPGELNRLTASVAIDGKIAKGVQ-------------ADVEDIVNNAIGMDGARGDTL 400 Query: 407 TITSMDFLENQLFNSGTVQVSF-MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465 ++ SM F + + ++ + +V +V + +L Sbjct: 401 SVVSMVFDPEGKKEAKQELEEIKKEGFKKNIIKAVIGVVAVVAIGAIGYLIYKKR----- 455 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 ++ +D ++D S S ++ + N + Sbjct: 456 ------------------------------SEREDMDYEDEDYISKSDSVDRKDNPLLGD 485 Query: 526 QSDLRLLHMI----EINEERFAKILRKWARS 552 +L L + E ++ +I++ W Sbjct: 486 DPELTLEEAVKMYAEEKPDQVTEIIKTWLNE 516 >gi|325926946|ref|ZP_08188226.1| flagellar basal-body M-ring protein/flagellar hook-basal body protein FliF [Xanthomonas perforans 91-118] gi|325542683|gb|EGD14145.1| flagellar basal-body M-ring protein/flagellar hook-basal body protein FliF [Xanthomonas perforans 91-118] Length = 687 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 78/330 (23%), Positives = 146/330 (44%), Gaps = 6/330 (1%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ Q+F SL TR L + ++I + + +A F+ P Y +LY L+ + Sbjct: 15 EKAGQWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAA 74 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L A I ++I +ISVP + AR+ LA GL + G+EL +K FG++ Sbjct: 75 DLLRTAQIPYKIDQATGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQ 134 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 F++ ALE E++RTI ++ + ARVH+ +P +F + +ASV++ Sbjct: 135 FVENARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQG 194 Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240 + +AI +LVA+++P++ VTV+D +G++L+ + + V+ + Sbjct: 195 LERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESS 254 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I + L G +++ + +Y+ + RS ++S + + Sbjct: 255 YNQRIRELLEPMTGPGRVNPETSVDMDFSVVEEARELYNGEPAKLRSEQVSDTSTSATG- 313 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTD 330 P+ N P +LE T Sbjct: 314 -PQGPPGATSNSPGQPPAAGNQALNLEETQ 342 >gi|307718598|ref|YP_003874130.1| flagellar M-ring protein [Spirochaeta thermophila DSM 6192] gi|306532323|gb|ADN01857.1| flagellar M-ring protein [Spirochaeta thermophila DSM 6192] Length = 569 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 107/593 (18%), Positives = 210/593 (35%), Gaps = 71/593 (11%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKL--EVSD 59 +L+++ + + + + +I S+++V + + +P L K + Sbjct: 7 NVLERVKNAWGKWSLVQK---IIFISIVMVLVGSLVFLASLSGAPSMVPLLNKAITDPQV 63 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + I+ L E N+ ++++ + + + R L + L ++ +ELFD + Sbjct: 64 LEDITTRLEEENVPYQVTADNRILVSDEKTARRMRAILVREDLVPRGTDP-WELFD-IER 121 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 + +T F + + RA+ + ++++ I A V +V+P+ F + P+AS++I Sbjct: 122 WTITDFERNVNLRRAITRTVEEHLKALDDIDDASVTLVLPEKALFAEDQEPPSASIIIVP 181 Query: 180 INPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-----ILGKS 230 S K E I LV AV LD ++T+ D G +L E + + Sbjct: 182 KPGSDITSNRKKIEGIVKLVQFAVEGLDPENITITDQRGVVLNDFEGMEQFDRLELARRQ 241 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP--------- 280 L Q +++E + I ALA D + EL+M +++ + P Sbjct: 242 LKTKQELENEYKKRILSALATVFRPDRVEIVNLDIELDMSDVEVKTEEHFPITMKPDNPR 301 Query: 281 ----DSKVERSIRLSK----DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332 +S+V SI LSK + PE E P L + + Sbjct: 302 TPYDESEVVPSITLSKEIQDEKFEGTGFNPEGPPGQEGQTPPAYKD---LEGLVGKYSRN 358 Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL------------TEVLGRSADQGK 380 N +NT++I D ++++R+S+AV ++ + + Sbjct: 359 SVIQNEVVNTRNITERKDPWEIKRISVAVALDGVWKWEYNEKGEVVFNPDGSIKRTYLPV 418 Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440 D + + +++ AA G RGD IT+ + F F R + Sbjct: 419 SDEDIRKAEELIKAAVGYKRERGDLITVQHIQFDRTLQFAEEDAAFR----ARRQLERTV 474 Query: 441 NALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIA 500 + V LLV F+ + + A M + Sbjct: 475 FYSLLGVAALLVAFIIFRLI------------AREMERRRRLKEEELARQHQAMREAALR 522 Query: 501 LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 S ++R+ + M + E A+++R W E Sbjct: 523 SAEEEAAAVEMSVEERARMELQEQAIN------MAREHPEEVAQLIRTWLMEE 569 >gi|15615021|ref|NP_243324.1| flagellar MS-ring protein [Bacillus halodurans C-125] gi|10175078|dbj|BAB06177.1| flagellar basal-body M-ring protein [Bacillus halodurans C-125] Length = 525 Score = 268 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 111/574 (19%), Positives = 222/574 (38%), Gaps = 81/574 (14%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 D++ +++++ T + + +++ +L+ I+L FF HY LY L + + I Sbjct: 9 RDRVTEYWRNRT---KKQQMVIVGAVLLIIILLAFLTFFSTRTHYVPLYSNLTLQETGNI 65 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L I I+++G++I VP + V ++ LAA+GLP S + Y F FG+T Sbjct: 66 KETLDARGISSEIANDGTTILVPETQVDALKVELAAEGLPQSGT-INYSTFRDSMGFGMT 124 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI-GARPTASVMIRAINP 182 + A+E E+A I+S+ G+ A V I +P+ + TASV++ Sbjct: 125 DNEFSLMERAAIESELADLIRSVDGVNQANVMITLPEQTLWVSDSQQEATASVVVDLAPG 184 Query: 183 --SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSLSIVQ 235 A+ HLV+ +VPNL + ++ +++ + ++ ++ + +I + Sbjct: 185 FQLDASQVRALYHLVSRSVPNLPIENIVIMNQMFEDYLYDDHHSTGSTLSVYEQQRAIQR 244 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-DSKVERSIRLSKDA 294 I+ ++ N+ + L +G D +V +++ + +E +P D + I +S + Sbjct: 245 DIERDLTRNLQQMLGTLVGRDKVLVSVTTDIDFTQENRQEERVEPVDEENMEGIAVSVEN 304 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE-NTDKKEEQSNYEINTKSIATTHDNYK 353 S + + + + + E + + E++ NYE+N YK Sbjct: 305 ITETYSGEGTPEGGIEGVGDDIPNFPGVYGTGEVDYELTEDRINYEVNRIRSDIVESPYK 364 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKI----VSAATG-------INSRR 402 + L I V+V + LA+I +I V + + Sbjct: 365 IRDLGIQVMV--------EPPEGMEELPADRLADIQQILGTVVRTSISGVYAAELTDDEF 416 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLL---VTFLGLHA 459 + I ++S F +G + + V++VG +L + FL + Sbjct: 417 NEKIFVSSQPFEGKADLETGA-------------GSSVPVWVYVVGGILLATIIFLIVLL 463 Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519 +RR + D+ + G + P TG Sbjct: 464 VRRRGDSDEDLMDDDGALTEEIPDLPQEEEGTG--------------------------- 496 Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 Q ++ M + E F+K+LR W + Sbjct: 497 -----AQKRKQIERMAKERPEEFSKLLRTWLSED 525 >gi|315186389|gb|EFU20149.1| flagellar M-ring protein FliF [Spirochaeta thermophila DSM 6578] Length = 569 Score = 268 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 106/593 (17%), Positives = 207/593 (34%), Gaps = 71/593 (11%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKL--EVSD 59 +L+++ + + + + +I S+++V + + +P L K + Sbjct: 7 NVLERVKNAWGKWSLVQK---IIFISIVVVLVGSLVFLASLSGAPSMVPLLNKAITDPQV 63 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + I+ L E N+ ++++ + + + R L + L ++ +ELFD + Sbjct: 64 LEDITTRLEEENVPYQVTADNRILVSDEKTARRMRAILVREDLVPRGTDP-WELFD-IER 121 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 + +T F + + RA+ + ++++ I A V +V+P+ F + P+AS++I Sbjct: 122 WTITDFERNVNLRRAITRTVEEHLKALDDIDDASVTLVLPEKALFAEDQEPPSASIIIVP 181 Query: 180 INPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-----ILGKS 230 S K E I LV AV LD +T+ D G +L E + + Sbjct: 182 KPGSDITSNRKKIEGIVKLVQFAVEGLDPDYITITDQRGVVLNDFEGMEQFDRLELARRQ 241 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP--------- 280 L Q +++E + I AL D + EL+M +++ + P Sbjct: 242 LKTKQELENEYKKRILSALGTVFRSDRVEIVNLDIELDMSDVEVKTEEHFPITMKPDNPR 301 Query: 281 ----DSKVERSIRLSK----DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332 +S+V SI LSK + PE E P L + + Sbjct: 302 TPYDESEVVPSITLSKEIQDEKFEGTGFNPEGPPGQEGQTPPAYKD---LEGLVGKYSRN 358 Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL------------TEVLGRSADQGK 380 N +NT++I D ++++R+S+AV ++ + + Sbjct: 359 SLIQNEVVNTRNITERKDPWEIKRISVAVALDGVWKWEYNEKGEVVFNPDGSIKRTYLPV 418 Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440 D L + +++ A G RGD IT+ + F F R + Sbjct: 419 SDEDLRKAEELIKGAVGYKRERGDLITVQHIQFDRTLQFAEEDAAFR----ARRQLERTV 474 Query: 441 NALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIA 500 + V LLV F+ + + A M + Sbjct: 475 FYSLLGVAALLVAFIIFRLI------------AREMERRRRLKEEELARQHQAMREAALR 522 Query: 501 LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 S ++R+ + M + E A+++R W E Sbjct: 523 SAEEEAAAVEMSVEERARMELQEQAIN------MAREHPEEVAQLIRTWLMEE 569 >gi|218512857|ref|ZP_03509697.1| flagellar MS-ring protein [Rhizobium etli 8C-3] Length = 316 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 167/316 (52%), Positives = 235/316 (74%), Gaps = 3/316 (0%) Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL- 217 P++G+FRK +PTASVMIRA + +A +IRHLVA+AVP LD+ DVT+LDS G+LL Sbjct: 1 PEVGNFRKAEQKPTASVMIRASAATGRSAATSIRHLVASAVPGLDVDDVTILDSAGQLLA 60 Query: 218 TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 + +E + L +SL+IVQ +Q E+E NI+KALA FLG+DNFRS+V A+LN D QQI+E Sbjct: 61 SGDEASNSSLNRSLNIVQNVQQEVESNIDKALAPFLGMDNFRSSVTADLNTDAQQIQETT 120 Query: 278 YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSD--RKVPLPRSLENTDKKEEQ 335 YDP+SKVERS+R +K+AQ+S+ Q ++A TVEQN+P + P S + +DK+EEQ Sbjct: 121 YDPESKVERSVRSTKEAQQSQQKQSDNATTVEQNIPQAAPDAGGASGPESQDKSDKREEQ 180 Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395 +NYEIN+++ ATT ++YK+E+LSIAVVVNKGR+ +++G ADQ KID+YLAE+ KIV++A Sbjct: 181 TNYEINSRTTATTRNSYKVEKLSIAVVVNKGRIAKMVGEPADQAKIDAYLAEMQKIVASA 240 Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455 GI+++RGD +T+T+MDFLENQL T V MD+LSR+ A +IN+L F+ +V ++ Sbjct: 241 AGIDAKRGDVVTVTAMDFLENQLLEDATGGVRVMDMLSRNLAGIINSLAFVAVAFVVVWM 300 Query: 456 GLHALRRLHNIDDAKK 471 GL L R + + A Sbjct: 301 GLRPLVRSVSGNGASA 316 >gi|194014358|ref|ZP_03052975.1| flagellar M-ring protein FliF [Bacillus pumilus ATCC 7061] gi|194013384|gb|EDW22949.1| flagellar M-ring protein FliF [Bacillus pumilus ATCC 7061] Length = 525 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 100/563 (17%), Positives = 224/563 (39%), Gaps = 48/563 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + ++F+++ + L +IL++ V + I++ + F +S L+ L ++ Sbjct: 1 MQLRTKTVEFWRNRSKL--QKILMIGGVAALAIIITV-VSIFASSEKMVPLFRDLSEAEA 57 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +I L N+ +++NG++I VP ++ LA++GLP + N Y F + F Sbjct: 58 GQIKQELDGKNVKSELANNGTTILVPEKQADSLKVTLASEGLPKTG-NIDYSFFANNSGF 116 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRA 179 GLT ++ +V A + E++ I +I GI ++V I +P F + + +AS++++ Sbjct: 117 GLTDNEFDVLKVDATQTELSNLINTIDGIKDSKVMINLPKDSVFVGEEQSNASASIVLQV 176 Query: 180 INPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIV 234 + + + HL++ +VPNL ++ ++D ++++ + + Sbjct: 177 ERGYTLAPQQVKGLYHLISKSVPNLKTENIVIMDQDSNYYDLNSSSDSYASGMDAQQQKK 236 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-DSKVERSIRLSKD 293 + I+ ++ I + L +G + +V +++ ++ +E + +P D + + I +S + Sbjct: 237 EEIEKNLQRKIQQLLGTMMGQEKVAVSVTTDIDFTEEKRKEDLVEPVDKENMQGIAVSAE 296 Query: 294 ---AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 S + + + + +K E++ NYE+N Sbjct: 297 KIAETYSGNGAAAGGTAGTGDDDVTNYQGADGANGSGDYEKSEDRINYEVNRIHKDIKES 356 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 YK+ + I +V +V +A+ + D ++ I+S + G +T Sbjct: 357 PYKIRDVGIQALVEPPTANDVNSLTAE--RQDDIKKILSTIISTSIDKEYTNGQALTQAD 414 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 + +N++ S + + + + I V++VG Sbjct: 415 L---DNKIVLSVSKLDGKQQTAAENPSNNIPIWVYIVG---------------------- 449 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 G + I V + + I + + V K + Sbjct: 450 ----GVLLLAIIALIILLVRKRRKEEEEEFEFDEHTPIHVPDIDTEPETEEMVRK---NQ 502 Query: 531 LLHMIEINEERFAKILRKWARSE 553 L M + E FAK+LR W + Sbjct: 503 LEKMAKDKPEDFAKLLRSWLSED 525 >gi|296330835|ref|ZP_06873310.1| flagellar MS-ring protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674353|ref|YP_003866025.1| flagellar basal-body M-ring protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296151840|gb|EFG92714.1| flagellar MS-ring protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412597|gb|ADM37716.1| flagellar basal-body M-ring protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 531 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 102/575 (17%), Positives = 225/575 (39%), Gaps = 66/575 (11%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + ++ +F+K+ + L + +++ S + I++ + F +S LY L + Sbjct: 1 MQMKNKTSEFWKNRSKLQK---ILMISALAAIIIIGIIISVFASSSKMAPLYKDLSAEEA 57 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +I L + +S+ G+ ISVP V ++ +AA+GLP + S Y F + F Sbjct: 58 GQIKEELDAKKVPNELSNGGTVISVPEDQVDSLKVQMAAEGLPKTGS-IDYSFFGQNAGF 116 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRA 179 GLT ++ +V+A + E++ I + GI ++V I +P F + + +AS++++ Sbjct: 117 GLTDNEFDMVKVKATQTELSNLINEMDGIKNSKVMINLPKDAVFVGEEQSAASASIVLQI 176 Query: 180 INPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ-- 235 + + HLV+ +VPNL ++ ++D ++ + S S Q Sbjct: 177 QPGYTLEQSQINGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSDSDAGSYADSYSSQQGI 236 Query: 236 --AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP------DSKVERS 287 ++ +I+ ++ L +G D +V A+++ + E + +P + + Sbjct: 237 KSQVEKDIQKHVQSLLGTMMGQDKVVVSVTADIDFTKENRTEDIVEPVDKENMEGIAVSA 296 Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 ++S+ Q + +A T ++++ + N +K + NYE+N Sbjct: 297 EKVSETYQGDGAANGGTAGTGDEDVTNYEADGENTESG--NYEKSSNKINYEVNRIHKEI 354 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 YK+ L I V+V S + + D ++ +V + ++ + ++ Sbjct: 355 AESPYKVRDLGIQVMVEPPDAKNTASLSTE--RQDDIQKILSTVVRTSLDKDATQNQNLS 412 Query: 408 ---------ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 ++ F ++ T + S + + + V+ A + ++ +LV Sbjct: 413 DEDINNKIVVSVQPFDGKVNLDTNTEKSSGIPLWAYIVGGVLIAAIIVLIIMLV------ 466 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 +P + I L N++ + ++ Sbjct: 467 -------------------RKKRAQEDEFEEYEYEVPQEPINLPDINEEENETAETVR-- 505 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 +L M + E FAK+LR W + Sbjct: 506 ---------RKQLEKMAKDKPEDFAKLLRSWLAED 531 >gi|149182503|ref|ZP_01860976.1| flagellar M-ring protein [Bacillus sp. SG-1] gi|148849763|gb|EDL63940.1| flagellar M-ring protein [Bacillus sp. SG-1] Length = 529 Score = 266 bits (679), Expect = 1e-68, Method: Composition-based stats. Identities = 109/572 (19%), Positives = 209/572 (36%), Gaps = 76/572 (13%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 +QL F+ + T + + A VI++ I + F + LY L S+ I Sbjct: 11 EQLNTFWSARTKKQKGMYGVAALVIILAIAV---TGFLSTRTNLVPLYSNLAPSETGSIK 67 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L I I+D GS+I VPS MV ++ LAA+G+P+S S Y F + FG+T Sbjct: 68 ENLDGRGIVSEITDGGSTIMVPSEMVDTLKVELAAEGIPNSGS-IDYSFFSQNAGFGMTD 126 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG-ARPTASVMIRAINPS 183 + ++ A++ E+A ++ I G+ A V I +P+ G F + +AS+++ Sbjct: 127 NEFNVMKLDAMQTELANLMKGIEGVQDANVMITLPEKGVFISDAVEQASASIVLNTKPGF 186 Query: 184 --VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQAIQ 238 K +++ HLV+ +VP+L ++ +++ + + G + + I ++ Sbjct: 187 NFDQKQIKSLYHLVSKSVPDLPTDNIVIMNQLFEYFEMENENSSFGGTVVQQMDIKDRVE 246 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD-----SKVERSIRLSKD 293 +I+ + L +G + +V +++ + P + S++ + Sbjct: 247 KDIQKQVQSMLGTLIGFNKVVVSVTTDIDFTQENREVNEVTPVDAENMEGIAVSVQRITE 306 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 Q V ++ V S + ++ EE N E+N YK Sbjct: 307 TFTG-NGQTAGGVPAAEDAGDGLGTYVEGENSNGDYERMEETINNEVNRIRREIVESPYK 365 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG---------D 404 + + I V+V S Q + + ++ I+ + + G D Sbjct: 366 IRDIGIQVMVEPPD--PEDPNSFPQDRQEDISQILSTIIRTSI--DKEAGTELTPEAIED 421 Query: 405 TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH---ALR 461 I ++ F F T + ++VG +L+ + L +R Sbjct: 422 KIVVSVQPFNGKMEFEQETPSA-------------LPWWTYVVGGILLAVIILLIFLMVR 468 Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521 R + + + + ++ P I + T Sbjct: 469 RNKTVVEEEVVYEERQQPVNIPDIDTEKET------------------------------ 498 Query: 522 YVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 S +L M E FAK+LR W E Sbjct: 499 -ESSVRRKQLEKMAREKPEEFAKLLRSWLADE 529 >gi|313650158|gb|EFS14571.1| flagellar M-ring domain protein [Shigella flexneri 2a str. 2457T] gi|332757276|gb|EGJ87613.1| flagellar M-ring protein domain protein [Shigella flexneri 2747-71] gi|332757502|gb|EGJ87837.1| flagellar M-ring protein domain protein [Shigella flexneri K-671] gi|332766674|gb|EGJ96878.1| hypothetical protein SF293071_2322 [Shigella flexneri 2930-71] gi|333017624|gb|EGK36936.1| flagellar M-ring protein domain protein [Shigella flexneri K-304] Length = 259 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 77/258 (29%), Positives = 130/258 (50%), Gaps = 10/258 (3%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 + L++ + + +++ S + + +A + +P Y L+ L D I Sbjct: 9 KSLEWLNRLRANPKIPLIVTGS---AAVAVMVALILWAKAPDYRTLFSNLSDQDGGAIVS 65 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L++ NI +R S+ +I VP+ V + R LA QGLP + G+EL D+ FG++ F Sbjct: 66 QLTQMNIPYRFSEASGAIEVPADKVHELR--LAQQGLPKGGA-VGFELLDQE-KFGISQF 121 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 122 SEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRAL 181 Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIE 242 AI HLV++AV L G+VT++D G LLT +N R++ L ++ I+ Sbjct: 182 DEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQ 241 Query: 243 MNINKALAAFLGVDNFRS 260 I L+ +G N + Sbjct: 242 QRIEAILSPIVGNGNIHA 259 >gi|229918627|ref|YP_002887273.1| flagellar MS-ring protein [Exiguobacterium sp. AT1b] gi|229470056|gb|ACQ71828.1| flagellar M-ring protein FliF [Exiguobacterium sp. AT1b] Length = 523 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 116/570 (20%), Positives = 219/570 (38%), Gaps = 66/570 (11%) Query: 3 ILDQLLQFFKSGTS----LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 + +QL + FKS T + R L+ I V ++ + FF++ P+ LY L Sbjct: 1 MNEQLKERFKSMTDALKAMPAKRKLVWGISIAVILIAALVLTFFLSRPNMAPLYTNLSAQ 60 Query: 59 DVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 + ++ L+ + I + NG S+ VP+ MV + ++ LAA G+P S S Y F + Sbjct: 61 EAGEVTEKLTADGVQSEIKATSNGVSVYVPTEMVDQLKVSLAAAGIPKSGS-IDYSFFSE 119 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASV 175 FG T + A++ E+ R I I GI A+V I +P+ F + PTAS+ Sbjct: 120 NAGFGTTDREMAVIERSAMQTELERLITQIEGINQAKVIISLPEKSVFLAEDQGEPTASI 179 Query: 176 MIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSL 231 ++ + + + + + HL++ +VPNL +++++D ++ L Sbjct: 180 VLNIGAGTNLEPNTVKGLYHLISKSVPNLKPENISIMDQYFTYYDLDQTVVAGGSSSDPL 239 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD-----SKVER 286 ++ + ++ ++ I + L+ LG + +V A+++ + + P + Sbjct: 240 ALKRQVEKDVRQQIQQMLSVLLGERSVLVSVTADIDTTQTAEEQNLVTPVDEENMEGIVT 299 Query: 287 SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346 S +A T A +N + E ++K E NYE+N + Sbjct: 300 SAERIAEAYTGGTGTATEATGTGEN--DTINFPAATGEGTEESEKNHEIINYEVNRITKQ 357 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVS---AATGINSRRG 403 + Y + L + ++V + + + I ++ A ++ Sbjct: 358 IQNAPYTIRDLGVQLIVEPPDGATSIDPQLEGDLETMMYSIIRTSLAKTDEAI-TDAELE 416 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 + + S F E + + + + A V+ AL+F A+RR Sbjct: 417 QKVVVVSRPFAEVEEVAATEQPTPWWMYAAAAGAVVLLALIF------------FAMRR- 463 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 +K EV ++ P V +L+ R V Sbjct: 464 ------RKQEVVEETNEWEVPYEDEV---------------------PDLDLEERGEGAV 496 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSE 553 K +L + E N E FAK+LR W E Sbjct: 497 KK---KQLEKLAESNPEEFAKLLRTWMSEE 523 >gi|83646781|ref|YP_435216.1| flagellar M-ring protein FliF [Hahella chejuensis KCTC 2396] gi|83634824|gb|ABC30791.1| flagellar M-ring protein FliF [Hahella chejuensis KCTC 2396] Length = 462 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 100/405 (24%), Positives = 176/405 (43%), Gaps = 37/405 (9%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 F+ + GR +LA++I+V +A + S +Y LY L+ +++ L+E Sbjct: 4 FWSEWSG-GRRVTFVLAALIVV--GAGVALYMMLTSHNYQVLYKDLDTEQAAKLTEKLNE 60 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 I +++ GS + V + A++ LA+ G + G+ELFD+ + +G+T F Q+I Sbjct: 61 LKIPYQLGAQGSQVLVSQDDLYNAKLKLASSGYALNGG-VGFELFDEAD-YGMTEFAQKI 118 Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYKS 187 RAL+GE+ARTI + I ARVH+V+P+ F+K +P ASV I + Sbjct: 119 NYQRALQGELARTIMAFDEIKFARVHLVLPESSLFKKDNKQPKASVTIVMEDGKYLSLDQ 178 Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-GKSLSIVQAIQHEIEMNIN 246 I++LVAA+V L VT+L+ G LT E L +++ ++ I Sbjct: 179 INGIQNLVAASVEGLKPETVTLLNHKGVALTQVETGDQATVSAQLKGKSSMEAFLQQKIV 238 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306 L V LN + P ++ + A R Sbjct: 239 VILNQIFDEGTTAVRVDVALNHKRVERVRETLVPFGDTDKGAVIKSSANRQY-------- 290 Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 +P RK P S+ ++D KEE+ Y + + ++ER++++VV+ Sbjct: 291 ----ELPDQDGRKKP--SSVISSDVKEEE--YAYGKQVETLSDAGGEVERITVSVVI--- 339 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 + I ++++A G++ RGD + + +M Sbjct: 340 ----------PANASGEQIEVIKSLIASAIGLDFERGDLVNVAAM 374 >gi|295706285|ref|YP_003599360.1| flagellar M-ring protein FliF [Bacillus megaterium DSM 319] gi|294803944|gb|ADF41010.1| flagellar M-ring protein FliF [Bacillus megaterium DSM 319] Length = 530 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 104/570 (18%), Positives = 216/570 (37%), Gaps = 68/570 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 D++ F+ + + ++ ++ I L A F+N + LY L + +I Sbjct: 9 RDKMKVFWNNRKKGQKIALIAAPLAAVLVISL---ASVFLNQDKFVPLYSNLSAQETGQI 65 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L ++ ISDNG++ISVP V ++ LAAQG+P S S Y F K SFG+T Sbjct: 66 KAELDARSVPSEISDNGTTISVPEQSVDSLKVDLAAQGIPDSGS-IDYSFFGKNASFGMT 124 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA-RPTASVMIRAINP 182 + ++ A++ E+A +++I G+ A+V I +P+ + +AS+++ Sbjct: 125 DNEFNVLKLDAMQTELANLMKNIQGVNDAKVMITLPNESVWANEKQGEASASIVLNTKAG 184 Query: 183 S--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIV----QA 236 + +++ HLV+ +VPNL ++ +++ + E N S + + Sbjct: 185 YKFDDQQIKSLYHLVSKSVPNLPTDNIVIMNQYFEYFDLKGNETNSASSSFASQNEAKKE 244 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD-----SKVERSIRLS 291 ++ +I+ + + L +G D +V A+L+ + E + +P + S Sbjct: 245 VERDIQRQVQQMLGRLVGQDKVMVSVTADLDFTQENREEKLVEPVDKDNMQGIAVSAEKI 304 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + E +Q + ++ + +K EE+ NYE+N Sbjct: 305 NETFSGENAQDGGVAGTGEE--DTTNYSSSTTSGDGDYEKNEERINYEVNRIHKEIVESP 362 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR--------G 403 YK++ L I V+++ L S + + IV + ++ Sbjct: 363 YKIQDLGIQVMIDPSNAKGKLQVSDTLESDVQKM--LGTIVRTSISKDANTKDLSDNAVS 420 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 D IT++ F + ++ + I L+ +++ L + R+ Sbjct: 421 DKITVSVQPFNGQETADNTASSIPLW--------MYITGGALLLIIVVLIVLLVRKRRQD 472 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 + ++ + + A++ Sbjct: 473 LDEEEYNEEYDETFEAYEAAQKAPALSA-------------------------------- 500 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSE 553 +Q+ L + + + E FAK+LR W + Sbjct: 501 EQQTKTNLETLAKQDPEEFAKLLRTWISED 530 >gi|311030130|ref|ZP_07708220.1| flagellar MS-ring protein [Bacillus sp. m3-13] Length = 529 Score = 263 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 106/571 (18%), Positives = 211/571 (36%), Gaps = 70/571 (12%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 I + F+ S T +T +L S ++V I A +F+N LY L V + + Sbjct: 8 IKTKTFSFWTSRTKAQKTAML---STVIVSIFAIAAMVYFLNKTDMAPLYKDLTVQETGQ 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L I +I++NG++I VP V ++ LAA+GLP S S Y F + + FG+ Sbjct: 65 IKEVLDGRGIQSQITNNGTAILVPQQSVDSLKVELAAEGLPKSGS-IDYGFFGERSGFGM 123 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG-ARPTASVMIRAIN 181 T I ++ A++ E+A ++SI G+ A+V + +P+ G F + +AS++I Sbjct: 124 TDNEFRIMKLDAMQTELANLVKSIEGVKEAQVMLSLPEEGVFVRESTQEASASIVIENDP 183 Query: 182 PSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI----LGKSLSIVQ 235 + A+ HLV+ ++PNL ++ +++ + N + + L + + Sbjct: 184 GYQFDQNHVNALYHLVSKSIPNLATDNIVIMNQNFEYFDLNNNQSSGNTFNASTQLELKK 243 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP------DSKVERSIR 289 I+ +I+ + + L +G + +V +++ + E P + R Sbjct: 244 EIERDIQRQVQQMLGMMMGYNKVVVSVTTDIDFTQEAREENRVTPVDPENMEGIAVSVER 303 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 +++ SE + T E ++P + +K EE+ N E+N Sbjct: 304 ITESYTGSEDTAGGVPGTGEADIPAYV---AGGGSGSGDYEKMEERINNEVNRIRSEIVE 360 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI-NKIVSAAT-----GINSR-- 401 YK+ L I V+V + L + Q + + +I + IV G + Sbjct: 361 SPYKVRDLGIQVMVEPPVADDPL---SMQENTINDIRQILSTIVRTTIDKNMLGEDPELA 417 Query: 402 RGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461 D + S+ ++ + + + + Sbjct: 418 NIDEKIVVSVQEFNGKVEMEESTESTIPTWVY---------------------------- 449 Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521 + + + + + + + + S + R Sbjct: 450 -IAAGILLAVILLLLFLLFKRSSKEEEEEIMVTEEETVPFQVPDINNEKESESSARR--- 505 Query: 522 YVSKQSDLRLLHMIEINEERFAKILRKWARS 552 +L M + + FAK+LR W Sbjct: 506 -------KQLEKMAKEKPDEFAKLLRSWLSE 529 >gi|308173583|ref|YP_003920288.1| flagellar basal-body M-ring protein [Bacillus amyloliquefaciens DSM 7] gi|307606447|emb|CBI42818.1| flagellar basal-body M-ring protein [Bacillus amyloliquefaciens DSM 7] Length = 536 Score = 263 bits (671), Expect = 8e-68, Method: Composition-based stats. Identities = 80/404 (19%), Positives = 165/404 (40%), Gaps = 20/404 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + F+ + + +T+ +++ S + I+L + F +S LY L + Sbjct: 6 MQMKTKTSAFWNNRS---KTQKILMVSGLAAFIILLIVVIIFTSSEKMVPLYKDLSAEEA 62 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +I L + ++D G+ I VP S V ++ LAA+GLP + S Y F K F Sbjct: 63 GQIKEELDTKKVSSELADGGTVIMVPESQVDSLKVQLAAEGLPKTGS-IDYSFFGKNAGF 121 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRA 179 GLT ++ +V A + E++ I + GI +++V I MP F + +AS++++ Sbjct: 122 GLTDNEFDVLKVDATQTELSNLINEMDGIKSSKVMINMPKEAVFVGEDQPEASASIVLQI 181 Query: 180 INP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ-- 235 + HLV+ +VPNL ++ ++D ++ + S + Q Sbjct: 182 KPGYSLDQSQINGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSDSGAGSVSDSYASQQGI 241 Query: 236 --AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD-----SKVERSI 288 ++ +I+ ++ L +G D +V A+++ ++ E + +P + S Sbjct: 242 KSQVEKDIQKHVQSLLGTMMGQDKVVVSVTADIDFTKEKRTEDIVEPVDKDNMEGIAISA 301 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 + + + + N + + + +K + NYE+N Sbjct: 302 EKVAETYKGDGAANGGTAGTGSND-TANYAAANGGSNSGDYEKSSNKINYEVNRIHKEIA 360 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV 392 YK+ L I V+V ++ + + + +I V Sbjct: 361 ESPYKVRDLGIQVMVEP---PNPKNAASLTAQRQADIQKILGTV 401 >gi|328553485|gb|AEB23977.1| flagellar MS-ring protein [Bacillus amyloliquefaciens TA208] Length = 531 Score = 263 bits (671), Expect = 8e-68, Method: Composition-based stats. Identities = 80/404 (19%), Positives = 165/404 (40%), Gaps = 20/404 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + F+ + + +T+ +++ S + I+L + F +S LY L + Sbjct: 1 MQMKTKTSAFWNNRS---KTQKILMVSGLAAFIILLIVVIIFTSSEKMVPLYKDLSAEEA 57 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +I L + ++D G+ I VP S V ++ LAA+GLP + S Y F K F Sbjct: 58 GQIKEELDTKKVSSELADGGTVIMVPESQVDSLKVQLAAEGLPKTGS-IDYSFFGKNAGF 116 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRA 179 GLT ++ +V A + E++ I + GI +++V I MP F + +AS++++ Sbjct: 117 GLTDNEFDVLKVDATQTELSNLINEMDGIKSSKVMINMPKEAVFVGEDQPEASASIVLQI 176 Query: 180 INP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ-- 235 + HLV+ +VPNL ++ ++D ++ + S + Q Sbjct: 177 KPGYSLDQSQINGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSDSGAGSVSDSYASQQGI 236 Query: 236 --AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD-----SKVERSI 288 ++ +I+ ++ L +G D +V A+++ ++ E + +P + S Sbjct: 237 KSQVEKDIQKHVQSLLGTMMGQDKVVVSVTADIDFTKEKRTEDIVEPVDKDNMEGIAISA 296 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 + + + + N + + + +K + NYE+N Sbjct: 297 EKVAETYKGDGAANGGTAGTGSND-TANYAAANGGSNSGDYEKSSNKINYEVNRIHKEIA 355 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV 392 YK+ L I V+V ++ + + + +I V Sbjct: 356 ESPYKVRDLGIQVMVEP---PNPKNAASLTAQRQADIQKILGTV 396 >gi|319649567|ref|ZP_08003723.1| flagellar M-ring protein [Bacillus sp. 2_A_57_CT2] gi|317398729|gb|EFV79411.1| flagellar M-ring protein [Bacillus sp. 2_A_57_CT2] Length = 533 Score = 263 bits (671), Expect = 8e-68, Method: Composition-based stats. Identities = 103/572 (18%), Positives = 205/572 (35%), Gaps = 69/572 (12%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + ++ +++ S T +T ++ + I+L AA F LY L S+ I Sbjct: 9 IGKVKEYWSSRTKKQKT---VMIGAAAICILLIAAAAFLSTRTTLVPLYSNLTPSETGTI 65 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 +L + I+D G++I VP V ++ LAA+G+P S S Y F + G+T Sbjct: 66 KESLDTRGVVSEIADGGTTIKVPEEAVDSLKVELAAEGIPKSGS-IDYSFFSQNAGIGMT 124 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI-GARPTASVMIRAINP 182 + ++ A++ E+A ++ I G+ A+V I +P+ G F +AS+++ Sbjct: 125 ENEFNVLKLEAMQTELANLMKGIDGVNDAKVMINLPEKGIFVNDSSEEASASIVLNTKPG 184 Query: 183 SVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQA 236 ++ +A+ HL A ++PNL ++ + + + N + I + Sbjct: 185 YQFEESQIQALYHLAAKSIPNLPTDNIVITNQFFEYFDLKNKQNSSSESTFAAQHEIKKE 244 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP------DSKVERSIRL 290 I+ +++ + L +G D +V A+++ + E + P + + ++ Sbjct: 245 IERDVQRQVQNMLGTLMGQDKVVVSVTADIDFTQENREENLVTPVDEENMEGIAISAQKI 304 Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 ++ + + + P +D V S + ++ EE N E+N Sbjct: 305 TETFTGNGEGAGGTPALGGNDEPAGTDSYVATGDSSGDYERIEETINNEVNKIRREIVES 364 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG---------INSR 401 YK+ L I V+V T S Q +I+ + +V + Sbjct: 365 PYKVRDLGIQVMVEPP--TADDPASLPQERINDITQILGTVVRTTINKDAAADAELTDEA 422 Query: 402 RGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461 D I ++ F F + T +T I ++ +G Sbjct: 423 IQDKIVVSVQPFNGKVEFTNET-------------STRIPWWIYAIGG------------ 457 Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521 I+ + + + N + S Sbjct: 458 -------------VLLLIIVLLIFLFVKARKRQKQEEEMEVQTAETFNLPDVNEEHETES 504 Query: 522 YVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 V + +L M + E FAK+LR W + Sbjct: 505 TVRR---KQLEKMAKEKPEDFAKLLRTWIAED 533 >gi|56964034|ref|YP_175765.1| flagellar MS-ring protein [Bacillus clausii KSM-K16] gi|56910277|dbj|BAD64804.1| flagellar M-ring protein FliF [Bacillus clausii KSM-K16] Length = 527 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 116/566 (20%), Positives = 227/566 (40%), Gaps = 59/566 (10%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 +Q+ F+ ++L ++ ++ + ++L+ I L A F +Y LY +L +++ Sbjct: 7 QFKNQVQTFWTESSTLRKSAVISVVLLLLLAIALAAALLF---RTNYAPLYSQLTLAEAG 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 +I AL + + R+S++G++I VP + V + ++ LAA+GLP S S Y F FG Sbjct: 64 QIQEALEQRGVAARVSNDGTTIHVPEADVDRLKVDLAAEGLPKSGS-IDYAFFQNQMGFG 122 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 +T + ++ E+A I+ + G+ A V I +P+ + G + + ++ + Sbjct: 123 MTDNEFTVIERSLMQTELAELIRGVQGVEQANVIITLPEESVWLNSGQESSTAAVVLQLE 182 Query: 182 PSVYK---SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQ 235 P +A+ HL++ +VPNL + ++ + DS T E E + I Q Sbjct: 183 PGYTLDSSQVKALYHLISKSVPNLPIENIVLSDSQFNNYTYQEEETSPAASFQSQREIKQ 242 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIRL 290 I+ +++ IN+ L+A +G +N +V A+++ +Q E + +P S + S+ Sbjct: 243 EIESDLKQTINQLLSAVVGPENAIVSVTADIDFTQEQRTEDLVEPVDEEEVSGLAISVER 302 Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 + T E V +P+ + +++ EE+ NYE+N Sbjct: 303 INEMYEGTTGNEEGVAGVGDEIPNYTGAAGGGD---SESERTEERINYEVNRIHKEIIES 359 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR---GDTIT 407 Y++ L I V+VN + L I + L I + G GD + Sbjct: 360 PYEIRDLGIQVMVNPPEGMQALP-PQQTADITAMLETIIRTTLPDDGEEEGEQDVGDRVV 418 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 +TSM F + + + + I ++ V LV L + + Sbjct: 419 VTSMPFAQTETGEAEQPS-----------SATIPVWIYAVAAGLVL---LIIILAVLLYR 464 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 + ++ + + P LM + + Sbjct: 465 KREPADLAEEQDEAAEPEPEQEDEPLMETEET-----------------------EESKQ 501 Query: 528 DLRLLHMIEINEERFAKILRKWARSE 553 +L + + E F+K+LR W E Sbjct: 502 MRQLNRLAKEQPEDFSKLLRTWLSDE 527 >gi|154686037|ref|YP_001421198.1| flagellar MS-ring protein [Bacillus amyloliquefaciens FZB42] gi|154351888|gb|ABS73967.1| FliF [Bacillus amyloliquefaciens FZB42] Length = 536 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 99/574 (17%), Positives = 201/574 (35%), Gaps = 64/574 (11%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + F+ + + +T+ +++ S + I+L + F +S LY L + Sbjct: 6 MQMKTKTAAFWNNRS---KTQKILMVSGLAAFIILLIVVIIFTSSEKMVPLYKDLSAEEA 62 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +I L + ++D G+ I VP S V ++ LAA+GLP + S Y F + F Sbjct: 63 GKIKEELDTKKVSSELADGGTVIKVPESQVDSLKVQLAAEGLPKTGS-IDYSFFGQNAGF 121 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRA 179 GLT ++ +V A + E++ I + GI +++V I MP F +AS++++ Sbjct: 122 GLTDNEFDVLKVEATQTELSNLINEMDGIKSSKVMINMPKEAVFVGEDQPAASASIVLQM 181 Query: 180 INP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME----RNILGKSLSI 233 + HLV+ +VPNL ++ ++D ++ + I Sbjct: 182 KPGYSLDQNQINGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSDSGAGSVSDSYASQQGI 241 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD-----SKVERSI 288 ++ +I+ ++ L +G D +V A+++ ++ E +P + S Sbjct: 242 KSQVEKDIQKHVQSLLGTMMGQDKVVVSVTADVDFTKEKRTEDTVEPVDKDNMEGIAVSA 301 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 + + + + N + + + + +K + NYE+N Sbjct: 302 EKVAETYKGDGAANGGTAGTGSND-TANYAETNGGSNSGDYEKSSNKINYEVNRIHKEIA 360 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT- 407 YK+ L I V+V SA + + + +V + N + +T Sbjct: 361 ESPYKVRDLGIQVMVEPPNPKNAASLSAQRQADIQKI--LGTVVRTSLDKNETQNQNLTD 418 Query: 408 --------ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA 459 ++ F N+ + Q S + I V Sbjct: 419 NDINNKIVVSVQPFDGKTSLNTDSAQSSGLPIWVYITGGV-------------------- 458 Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519 + + P + + L N++ ++ Sbjct: 459 -----LLAAIILLIILLIRKKRSQEDEYEEYEYETPPEPVRLPDINEEKIETEETVR--- 510 Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 +L M + E FAK+LR W + Sbjct: 511 --------RKQLEKMAKEKPEDFAKLLRSWLDED 536 >gi|294500939|ref|YP_003564639.1| flagellar M-ring protein FliF [Bacillus megaterium QM B1551] gi|294350876|gb|ADE71205.1| flagellar M-ring protein FliF [Bacillus megaterium QM B1551] Length = 530 Score = 261 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 106/571 (18%), Positives = 220/571 (38%), Gaps = 70/571 (12%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 D++ F+ + + ++ ++ I L A F+N + LY L + +I Sbjct: 9 RDKMKVFWNNRKKGQKIALIAAPLAAILVISL---ASVFLNQDKFVPLYSNLSAQETGQI 65 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L ++ ISDNG++ISVP V ++ LAAQG+P S S Y F K SFG+T Sbjct: 66 KAELDARSVPSEISDNGTTISVPEQSVDSLKVDLAAQGIPDSGS-IDYSFFGKNASFGMT 124 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA-RPTASVMIRAINP 182 ++ ++ A++ E+A +++I G+ A+V I +P+ + +AS+++ Sbjct: 125 DNEFDVLKLDAMQTELANLMKNIQGVNDAKVMITLPNESVWANEKQGEASASIVLNTKAG 184 Query: 183 S--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL----SIVQA 236 + +++ HLV+ +VPNL ++ +++ + E N S + + Sbjct: 185 YKFDDQQIKSLYHLVSKSVPNLPTDNIVIMNQYFEYFDLKGNETNSASSSFASQNEVKKE 244 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD-----SKVERSIRLS 291 ++ +I+ + + L +G D +V A+L+ + E + +P + S Sbjct: 245 VERDIQRQVQQMLGRLVGQDKVMVSVTADLDFTQENREEKLVEPVDKDNMQGIAVSAEKI 304 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + + +Q + ++ + +K EE+ NYE+N Sbjct: 305 NETFSGKNAQDGGVAGAGEE--DTTNYSSSTTSGDGDYEKNEERINYEVNRIHKEIVESP 362 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE-INKIVSAATGINSRR-------- 402 YK++ L I V+++ + G+S ++S + + + IV + ++ Sbjct: 363 YKIQDLGIQVMIDP---SNAKGKSQVSDTLESDVQKMLGTIVRTSISKDANTKALSDNAV 419 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 D IT++ F + ++ + ++++G Sbjct: 420 SDKITVSVQPFNGQETADNTASSIPLW--------------MYIIG-------------- 451 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 G ++ I + D D + F Q Sbjct: 452 ------------GALLLIIVVLIVLLIRKRRQDLDEEEYDEEYDETFEAYEAAQKAPVLS 499 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSE 553 +Q+ L + + + E FAK+LR W + Sbjct: 500 AEQQTKSNLETLAKQDPEEFAKLLRTWISED 530 >gi|329896193|ref|ZP_08271387.1| Flagellar M-ring protein fliF [gamma proteobacterium IMCC3088] gi|328921936|gb|EGG29302.1| Flagellar M-ring protein fliF [gamma proteobacterium IMCC3088] Length = 640 Score = 261 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 118/575 (20%), Positives = 219/575 (38%), Gaps = 53/575 (9%) Query: 26 ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISV 85 A +L+ ++LF+ +NS Y ++ + D AL + RI+ I V Sbjct: 70 AISVLLAVLLFVIFGSMLNSTGYRSISNGMSEPDRQASYDALLASQYKVRINPASGMIEV 129 Query: 86 PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145 P +A++ LA+QGLP S+ GY ++ S + FM+++ A+E E+A+TI Sbjct: 130 PDGSYQQAKLFLASQGLPRSAIAGGYSALNENASMTQSQFMEQVQYNNAMELELAKTISQ 189 Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS--VYKSAEAIRHLVAAAVPNLD 203 I I +ARVHI + F + ASV+++ ++I HLV+++VP + Sbjct: 190 IDSIESARVHIAVNKQSVFVRERMPSKASVVVKPYFGRVVTQPQVQSIIHLVSSSVPYMS 249 Query: 204 MGDVTVLDSTG-KLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAV 262 DVTV+D+ G L + + + K++ + ++ E+ I + LG N +S V Sbjct: 250 TTDVTVVDNYGILLSSDSSDDSLGTQKNIDFERRMEAELSGRIVDLIMPVLGEGNVKSIV 309 Query: 263 VAELNMDTQQIREIVYD--PDSKVERSIRLSKDAQRSE--TSQPESAVTVEQNMPH--VS 316 +++ + +D RS LS D + P + + P + Sbjct: 310 NVDVDFTETESTFEEFDRSGTGPKTRSEVLSNDEVIGQAAAGIPGGVSNIAPDAPELEAT 369 Query: 317 DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA 376 LE T + + NYE++ ++ L+ A+++N+ L +++ Sbjct: 370 GAAAGAGAGLETTQRTQTTRNYELDKAVRYVKEQPGRVLGLTAAIMLNESALRDLVLIKL 429 Query: 377 DQG---------------------------------------KIDSYLAEINKIVSAATG 397 Q ++D + +V A Sbjct: 430 RQAAGTTSNSTPLEGRLAPDSAGDVNATSVGLEEFSEQQINEQMDIEIERFRGLVIRALP 489 Query: 398 INSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457 + RGD+I I + F + T + + + FL LLV + Sbjct: 490 FDDVRGDSINIAAAPFYIDAPIEIITPW-WEQEGIVEWGKHGFTVIAFLFLLLLVVRPIM 548 Query: 458 HALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS 517 ++DD K P A+ G + A + S S ++ Sbjct: 549 AFYMPKPSVDDLAVLAEKMKDGELTPAELEALEKGETLEEIKAKLKPKK--SSISADMLD 606 Query: 518 RINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 N+Y K + +RL ++ + R A +L+K + Sbjct: 607 TANTYDDKVALIRL--LVAEDSGRVANVLKKMIKP 639 >gi|158320512|ref|YP_001513019.1| flagellar M-ring protein FliF [Alkaliphilus oremlandii OhILAs] gi|158140711|gb|ABW19023.1| flagellar M-ring protein FliF [Alkaliphilus oremlandii OhILAs] Length = 515 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 108/564 (19%), Positives = 213/564 (37%), Gaps = 67/564 (11%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 I +QL ++F+ + + + ++LAS + ++ ++ + P Y LY L Sbjct: 7 QIRNQLNEYFQG---MDKKKKIMLASGTIFILLALTGIIYYFSRPEYVELYSNLRPEQTG 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L+E NI + I VP +A++ +A +GLPS+ + +E NSF Sbjct: 64 EIIERLTENNIKAKFGQTSGIILVPKEDQKRAQVVVATEGLPSAKFS--FEDVFSGNSFM 121 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARPTASVMIRA 179 +TS + V AL+ +A I+ I+G+ +A V +V+P+ F ASV + Sbjct: 122 MTSEEKSKQYVYALQNYLASIIEEINGVKSANVALVVPENSGFILKNNNNLAKASVRLDL 181 Query: 180 INPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIV 234 ++ S I LV+ AV L +VT+ S G++L + E + +L++ Sbjct: 182 QGNAILDKNSINGIAILVSNAVEGLSPENVTIHGSDGRVLNTDSDEDSDVFASNNNLALQ 241 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD-----SKVERSIR 289 Q+++ ++E +I L+ G N +L+ D++ + P + + RS++ Sbjct: 242 QSVKEKLEESITNFLSNVYGYGNIVVMANVKLDFDSEVTEIKEFAPPIEGETTGIPRSLQ 301 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 + + + + V + NYEIN Sbjct: 302 ELSKESVNGGTGGAPGTPTNADDDTDPAQYVVGDEEYSTYSEASRTINYEINELYKKIVK 361 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 +++ +++AV VN L AD ++ I+SAA G++++ + + Sbjct: 362 AQGQVKDITVAVFVNSAAL-------ADGDLTAEQRTDLANIISAAAGLDTK---VVQVG 411 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 F + ++ + L +I LV L A R N + A Sbjct: 412 VQQFNNGAMEPGDSLAGTSSSSLPLWAIGMI-------AVALVGITYLIASSRAKNKNKA 464 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 + P+ + + ++ L S Q Sbjct: 465 ME------------PLEEMIIPETIAEIDLELSGS---------------------QVKQ 491 Query: 530 RLLHMIEINEERFAKILRKWARSE 553 ++ ++ E A++L+ W + Sbjct: 492 QIEKLVSKKPEAVAQLLKNWLNED 515 >gi|304404244|ref|ZP_07385906.1| flagellar M-ring protein FliF [Paenibacillus curdlanolyticus YK9] gi|304347222|gb|EFM13054.1| flagellar M-ring protein FliF [Paenibacillus curdlanolyticus YK9] Length = 527 Score = 259 bits (663), Expect = 7e-67, Method: Composition-based stats. Identities = 106/570 (18%), Positives = 216/570 (37%), Gaps = 71/570 (12%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 D+L Q++ + G+ + + L + I+ + + + Y+ + L+ +D + Sbjct: 9 RDRLSQWW---SQTGKKQKIWLGGTLGFLILAIILLTYIFSRTDYEIAFQNLDTTDSAAV 65 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L + I +++S +G SI VPS++ + +I + +QGL + S + +G T Sbjct: 66 MTYLDSSGIKYQLSSDGKSILVPSAVASRVKIDVGSQGLVRNGSIGFDSFNQNSSQWGTT 125 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRAINP 182 + AL GE+ + + ++ G+ +++V + +P F + AS+ ++ N Sbjct: 126 DNEFNVKYRNALNGEVQQLLNNMQGVESSKVLVTLPQESVFADREEEHAIASITLKFTNG 185 Query: 183 SVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS------LSIV 234 + LV AVPNL + D+T+ + G+L+++ G + I Sbjct: 186 YRPSQKEVDGYFKLVKTAVPNLAIDDITIASTEGELVSSEAGGSPANGGTEVADQLFQIQ 245 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP------DSKVERSI 288 + + E++ NI + L+ +G N + + LN D + + + +P V Sbjct: 246 RKYETELKKNIQQYLSTMIGEGNVAVYIASSLNFDQKTSEQNLVEPIANNNNKGVVLSEQ 305 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 SK + ++++ + E ++P + S E T NYEIN Sbjct: 306 ETSKTSTNTDSAVGGVPGSGETDVPGYTAANGAGNSSNEETSS---IRNYEINRIKNIVE 362 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT--- 405 + ++ L+I++ VN+ L Q +I +Y+ +I + A +G++ D+ Sbjct: 363 SSPFMIKDLNISIGVNRASLQGEA-----QTQITNYVKQILRTQLAQSGLDVT-SDSVVS 416 Query: 406 --ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 +T+ + DF S LS + I + + R Sbjct: 417 QRVTVMAQDFAAGGA-------GSESSKLSTAWMAGIGIAALALIAGFAIGMMRKRKR-- 467 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 A D + ++ D+ S + + Q R N Sbjct: 468 --------------------NAEIAAAEAAAAADPVRVEFPTLDLDSGANDHQVRKN--- 504 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSE 553 L + + E F +LR W E Sbjct: 505 -------LETLAKRKPEEFVNLLRTWLVDE 527 >gi|167465322|ref|ZP_02330411.1| flagellar MS-ring protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 425 Score = 259 bits (663), Expect = 7e-67, Method: Composition-based stats. Identities = 85/417 (20%), Positives = 192/417 (46%), Gaps = 16/417 (3%) Query: 3 ILDQLLQFF----KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 + +++ Q++ + + + L + + I+ + ++ Y + L+ + Sbjct: 1 MNEKIGQYWGRVKQYWNKYSKKTKITLIAAAVFMILTVGIISYNLSKTEYSTAFTNLQPN 60 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 I L + I +++S +G SI VP++ V + +I + ++GL N GY +FD+ Sbjct: 61 AAADIKAYLDQEKIPYKLSADGKSIGVPTAQVAEVKIAVESKGLNKGG-NVGYGIFDQSG 119 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMI 177 SFG T E+ ++ A++GE+ + I S I ++V I +P+ G F K + +ASV++ Sbjct: 120 SFGTTDNQFEMQKLNAMQGELQQLINSNQAIANSKVLINIPEQGVFLSKNEEKASASVVL 179 Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK-----S 230 + I +LV+ +V NL + ++T+ D G+ + ++ + + G Sbjct: 180 EVKQGYTLDQNQIDTIYNLVSHSVKNLPLDNITIADQFGQYMVPSKADGSPQGSTQVANQ 239 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD-PDSKVERSIR 289 + + + +++ NI LA G + VV+ +N D ++ +E + P+ ++ + Sbjct: 240 FQVKKQFESDMQRNIVNLLAPMYGQNKVVVNVVSTMNFDQKKTKEQLVSAPNQDEQKGLE 299 Query: 290 LS-KDAQRSETSQPESAVTVE-QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 +S ++ Q+S +S +A V V + +++ ++ NYE+N + Sbjct: 300 ISVQELQKSASSDGATAGGVAGSGTNDVPGYESTSNSGNSKSEENQKTVNYEVNRITNDI 359 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD 404 Y ++ L+I V ++ + G+ + +++ + I K A +G+ + D Sbjct: 360 IRAPYVVKDLNITVAIDTKSVNGNPGKIENAELLENAMKGIVKTALADSGVEYEQAD 416 >gi|296274027|ref|YP_003656658.1| flagellar M-ring protein FliF [Arcobacter nitrofigilis DSM 7299] gi|296098201|gb|ADG94151.1| flagellar M-ring protein FliF [Arcobacter nitrofigilis DSM 7299] Length = 580 Score = 259 bits (661), Expect = 1e-66, Method: Composition-based stats. Identities = 120/558 (21%), Positives = 241/558 (43%), Gaps = 36/558 (6%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIM---LFMAARFFVNSPHYDNLYVKLEVSDV 60 +DQLL+F + S R I+ S++LV ++ ++ + + +Y + L + V Sbjct: 1 MDQLLKFVNNLNSAQRAVIIGGFSLLLVLLLGLLIYSNVKAEDSKLNY-TIATNLTKNQV 59 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSM--VGKARIHLAAQGLPSSSSNSGYELFDKVN 118 S L + I F + +G+S+++ +S + A+I L ++S + G+E+F+K + Sbjct: 60 MLASNELEASGILFSVVGSGNSLTLKTSKEFINIAKIKLVTSD-AATSKHVGWEIFEK-S 117 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178 S G T+F ++ +RALEGE++R+++S+SGI+ A V + +P F + PTAS ++ Sbjct: 118 SLGTTNFENKVKYLRALEGELSRSLESLSGILRASVKLAIPKETIFTERKTPPTASAVLT 177 Query: 179 AINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK--SLSIV 234 K + I++ +A+A+PNL ++ ++D G +L ++ E + L Sbjct: 178 LKPGVYLTQKQIDGIKNFIASAIPNLTTNNIKLIDQDGSILEQSKEEADNLSSVTQNKYK 237 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 + ++ + E I L F+G + V LN + +E +Y+P+ + RS + ++ Sbjct: 238 KRLEKDFESKIVDLLEPFVGKGRVVARVSLSLNFSKKHTQEEIYEPEGTI-RSQQTTEST 296 Query: 295 QRSETSQPESA--VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 S+ ++A V+ N+ + + + + NYEI+ + I NY Sbjct: 297 SSSDGVVKDTAAVPGVQSNI-QAPQPEGNKGTNSSKNETSKNIVNYEISKRVIDHEDKNY 355 Query: 353 -KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 + +++ AV + LT V + D ++ I ++V G + +RGD IT+ Sbjct: 356 STINKITAAVTFDSAALTNVQNK-------DEFINNIVEVVQDTIGYDEKRGDKITVKDF 408 Query: 412 DFLE-NQLFNSGTVQVSFMDILSRHFATVINALV-------FLVGTLLVTFLGLHALRR- 462 F+ + N ++ V L +L+ +L+ + + Sbjct: 409 KFVTYDNKANLDANGNPIVEDSGDTIGMVKAILAEFSEYFQYLIALILLFIFYRKFIVKN 468 Query: 463 ---LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519 + + G VT D LDS+ + S R+ Sbjct: 469 DVVILSDGLTSSGTGKAGGGKGKDINIPGVTDDTKLEDEFNLDSAKGRLKSKVRSQILNN 528 Query: 520 NSYVSKQSDLRLLHMIEI 537 + ++S + +IE Sbjct: 529 LEGLDEESAAKYEVLIEE 546 >gi|205373372|ref|ZP_03226176.1| flagellar MS-ring protein [Bacillus coahuilensis m4-4] Length = 504 Score = 258 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 96/542 (17%), Positives = 204/542 (37%), Gaps = 51/542 (9%) Query: 25 LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSIS 84 + V+L+ I+L +A FF LY L ++ I +L I IS+ G++I Sbjct: 1 MGIVVLLTILLIVAVTFFSTRTALVPLYSNLSPAETGSIKESLDSKGITSEISEGGTTIL 60 Query: 85 VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144 VP+ MV ++ LA++GLP + S Y F + FG+T + ++ A++ E+A I+ Sbjct: 61 VPTEMVDTLKVQLASEGLPKTGS-IDYSFFSQNAGFGMTDNEFNVLKLDAMQTELALLIK 119 Query: 145 SISGIVAARVHIVMPDMGSFRKIG-ARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPN 201 SI G+ A V I +P+ G F + +AS++++ ++ ++ + +LV+ +VPN Sbjct: 120 SIEGVQDASVMISLPEQGIFVNDQTQQASASIVLQTQPGYQFEQSQISGLYNLVSKSVPN 179 Query: 202 LDMGDVTVLDSTGKLLTANEMERNILG----KSLSIVQAIQHEIEMNINKALAAFLGVDN 257 L ++ +++ + + + + + + I+ +I+ + L +G + Sbjct: 180 LPTDNIVIMNQFFEYFELENVNNSSFAGNISSQMDVKKQIERDIQQQVQSMLGTLIGFNK 239 Query: 258 FRSAVVAELNMDTQQIREIVYDPD-----SKVERSIRLSKDAQRSETSQPESAVTVEQNM 312 +V +++ + E + P + S + + E + V ++ Sbjct: 240 VVVSVSTDIDFTQEAREENLVVPVDEENLEGITMSAQRITETFTGEGANAAGGVPAGEDP 299 Query: 313 PHVSDRK-VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV 371 V + ++ EE NYE++ YK+ + I V+V + Sbjct: 300 ADSLGTTYVGSTDGDGDYERIEETMNYEVSRVMKEIVESPYKVRDIGIQVMVEPPTPDDP 359 Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDI 431 + + + ++ I+ + + ++ D + V V+ + Sbjct: 360 TSLPLETQDDITQI--LSTIIRTSI--DKE-------SNPDLTPEAIEQKVVVSVAEFNG 408 Query: 432 LSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTT 491 +T I A+ + V + + I+ + Sbjct: 409 KQEFTSTNIPAIPWWVYVI--------------GGILLAVIILLIFMIVRSRKNNIEEEL 454 Query: 492 GLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWAR 551 I++ N++ S + +L M E FAK+LR W Sbjct: 455 EYEEPVRISIPDVNEEKESET------------TVRKKQLEKMARDKPEEFAKLLRTWMT 502 Query: 552 SE 553 E Sbjct: 503 EE 504 >gi|332981431|ref|YP_004462872.1| flagellar M-ring protein FliF [Mahella australiensis 50-1 BON] gi|332699109|gb|AEE96050.1| flagellar M-ring protein FliF [Mahella australiensis 50-1 BON] Length = 533 Score = 258 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 115/574 (20%), Positives = 232/574 (40%), Gaps = 71/574 (12%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + QL +F++ T + RI+I A +I+ I + A Y LY L++ + Sbjct: 9 NMRKQLNEFWQGLTPSQKNRIIIAAVLIIAGIAVTGAIW---GRRQYTVLYSGLDIKEAG 65 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I+ L E + +R + G++I VP K R+ LA QG+P + N Y+LF + ++FG Sbjct: 66 EITQKLDEMGVPWRTAAGGTAIEVPKGQDAKIRMQLATQGIPKTGGN--YDLFMQSSAFG 123 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARPTASVMIRA 179 T + ++ + + + +I +I G+ A V+I +P+ SF TASV+++ Sbjct: 124 TTDYKEQKLYIFQQQERLQESIMTIQGVDQAVVNISVPEKDSFVLKNDVQPATASVLLKL 183 Query: 180 INPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQ 235 KSA+ I+ LVA +V L +VTV+D +L+ + E +I + + + + Sbjct: 184 SPGVEMKSAQVSGIQQLVAKSVIGLKSENVTVIDDKANILSVEQKEDDIRTADQQVDLEK 243 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSK 292 +Q E++ + + L G V +L+ D + I + P D + S++ K Sbjct: 244 KVQDELQQKLLQLLEPIFGPKKVVVGVGVQLDFDKRSSESIQWQPVLDDEGIAVSMQTIK 303 Query: 293 DAQ-------------RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYE 339 ++ + + VE + + D + +K+E NYE Sbjct: 304 ESMINMPAGEVPGTANNGADTGGQGPPPVEDDTGNNPDGYPGTNQGNSEYNKEENTINYE 363 Query: 340 INTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN 399 +N KL+ ++I+VVV+ ++E + + + A GI+ Sbjct: 364 VNQLKQQVEEAQGKLKSMTISVVVDGENISEQVRQQVQSVV------------AGAAGID 411 Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA 459 ++ + + +M F L ++ + ++ N ++ L+ + A Sbjct: 412 AQ---YVIVQAMPFSVASLQEDINNALN-ASQQQKQADSMRNIILGLITAAVAGAAAFIA 467 Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519 +R + A + E M I S ++I + ++I Sbjct: 468 VRVANGRRGAVEPE--------------------MVEAGIPEGVSIEEIPMEPEDEHTKI 507 Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ +++ + A++LR W + Sbjct: 508 --------KQQIEKLVDQKPDVVAQLLRTWLNED 533 >gi|171321207|ref|ZP_02910177.1| flagellar M-ring protein FliF [Burkholderia ambifaria MEX-5] gi|171093517|gb|EDT38687.1| flagellar M-ring protein FliF [Burkholderia ambifaria MEX-5] Length = 495 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 99/410 (24%), Positives = 172/410 (41%), Gaps = 39/410 (9%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + + + + R R LA + + A + P Y L L+ D Sbjct: 1 MKRSISRLGAYFLAGSRARQFALAGTLTAVVGCAGLAAWLALRPSYQILARDLKPQDAAA 60 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 ++ L + I FR ++ ++I VP++ AR+ L + L +G+ELF++ + FGL Sbjct: 61 VAAQLDKEKIPFRYDESTAAILVPANDARAARVRLTSADLRLQGV-AGFELFNQ-SDFGL 118 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T F Q++ RAL+GE+ARTI ++ I ARVH+ +P+ FR+ RP ASV + + Sbjct: 119 TEFAQKVNYQRALQGELARTIATLDAIELARVHLSLPEASLFRRDRGRPKASVALFVRDG 178 Query: 183 SVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240 + + I+ LVAAAVP + DV+VL+ +G +A+ ++ ++ A++ Sbjct: 179 HALEPDVVKGIQRLVAAAVPEMSAADVSVLNQSGA--SADARGADVDDPKFALKNAVEQR 236 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 E I +A G +V A L+ D + S + +S + Sbjct: 237 YEHKILAQIAPIAGAGRATVSVDASLDFDQIRTTRE-----SGLTQSA--------ANPG 283 Query: 301 QPESAVT--VEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 P A T P+ +P R+ + E + E + +LS Sbjct: 284 NPPGAPTHSATAGWPNAGLPPLPGARTAPI---EPETARSE--RSVEQIVRSPGAIRKLS 338 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 + +V++ + IVSA+ G + RGDT+ I Sbjct: 339 VGIVLDDTM-------------TPERATRLRDIVSASIGFDPARGDTLAI 375 >gi|330809237|ref|YP_004353699.1| flagellar M-ring protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377345|gb|AEA68695.1| Putative Flagellar M-ring protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 458 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 99/414 (23%), Positives = 189/414 (45%), Gaps = 49/414 (11%) Query: 18 GRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS 77 GRTR+ ++ + L+ + L A+ ++V P Y LY + + +I LS+ ++ +RI+ Sbjct: 12 GRTRVFLIGA--LLIVGLLAASAWWVLRPQYVALYRNADEASQAQILATLSQRHVPYRIN 69 Query: 78 DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137 +I V + AR++LA G+P+ +G+ELFDK + +G++ F Q+I RA+EG Sbjct: 70 TQQGAIEVLADHAASARMYLAEAGIPTRGG-TGFELFDKAD-YGMSEFSQKINYQRAMEG 127 Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLV 195 E+ARTI S+S + ARVH+ +++ P ASV++R + + I+ LV Sbjct: 128 ELARTIMSMSEVEYARVHLTFKKTSLYQQAEEPPKASVIVRLRSAGTLMPQRVRGIQQLV 187 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255 ++AV + + V+VL+ G++L+A++ + L + ++ +++ + LA LG Sbjct: 188 SSAVEGMTLERVSVLNEDGQVLSASD-GAAAAPEHLQLTAQVEQVLKLKAEELLARPLGH 246 Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV 315 +V +N D + P + R + ++ + S Sbjct: 247 RGVDVSVRVLMNFDRVKSISEQ--PLTNKMRREKRTESTENS------------------ 286 Query: 316 SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS 375 S + + +YE+ T H K+ER+++ VV+ Sbjct: 287 ------NGESTSKRSQNNREIDYEVGKARAETEHAAGKIERITVGVVL------------ 328 Query: 376 ADQGKIDSYLAEINKIVSAATGINSRRGDTITIT---SMDFLENQLFNSGTVQV 426 D+ + +I ++ AA G++ +RGD + + M E +VQ Sbjct: 329 -STPVSDAQMKDIQALLEAALGLDLKRGDRLVMVYIPDMPVPETTPVAEPSVQP 381 >gi|296282266|ref|ZP_06860264.1| flagellar M-ring protein FliF [Citromicrobium bathyomarinum JL354] Length = 526 Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 97/415 (23%), Positives = 182/415 (43%), Gaps = 21/415 (5%) Query: 29 ILVPIMLFMAARFFVN-SPH-YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVP 86 + L +AA + +P LY L+ + + L +A ID++I++N ++SV Sbjct: 32 FVGMAGLGIAALLWATLAPGPQRVLYSSLDDASRASVVATLDQAGIDYQINNNTGALSVS 91 Query: 87 SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146 S + +AR+ +A+ G ++ +G ++ + + G + ++ A E E+ T+Q I Sbjct: 92 ESDLYRARMVVASNG-SIAAPETGAQMIENL-PLGASRTLEGDRLRAAQERELMLTVQEI 149 Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDM 204 G+ + RVHI + F + P+AS+M+R AI +LVA +VP L Sbjct: 150 DGVESVRVHIAKAERSVFVRENVAPSASIMVRMAPGRELADSQVSAIVNLVAGSVPGLSP 209 Query: 205 GDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVA 264 V V+D GKLLT + + L + ++ ++ +++ L+ +G D F S V Sbjct: 210 DAVRVVDQHGKLLT--DKREGAGNERLDLQTQMEAKLTAQVDQLLSPMIGADAFSSQVQV 267 Query: 265 ELNMDTQQIREIVYDPDSKVER-SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRK---V 320 EL+M+ YD D + R + + S +Q P + P ++DR Sbjct: 268 ELDMNEVTSARESYDKDGAIRRETTQQSSTSQAPAAGIPGATANTPPADPQLADRAPQDT 327 Query: 321 PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380 P + YE+ + + L+R+S+AV ++K + Sbjct: 328 PPADGAQTMGDTSASRTYELGREVSVSNLTPGALKRVSVAVAIDKNAMANA--------- 378 Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435 + + +I ++VSAA G RGD +T+ F E + + + ++ R+ Sbjct: 379 NAADIKKIEELVSAAVGAQDARGDKVTVMIRPFTEAVVDKPAFYETGWFAMVVRN 433 >gi|149184178|ref|ZP_01862496.1| flagellar M-ring protein FliF [Erythrobacter sp. SD-21] gi|148831498|gb|EDL49931.1| flagellar M-ring protein FliF [Erythrobacter sp. SD-21] Length = 517 Score = 257 bits (656), Expect = 4e-66, Method: Composition-based stats. Identities = 98/536 (18%), Positives = 197/536 (36%), Gaps = 35/536 (6%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 + +S + R + + L ++ LY L ++ + L Sbjct: 4 ERLRSFAAQSAVRKAAPWFAGVAGMGLLALTWAALSPAPQRVLYSSLGDAERASVVTTLD 63 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 +A I + I + +++V V +AR+ +A+ G ++ G + ++ Sbjct: 64 KAGISYTIDSSTGALTVGEDDVYRARMLVASDGSLAAPETG--SDLIASLPMGASRTLEG 121 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-- 186 A E E+ TI I G+ A RVHI + F + P+AS+M+R Sbjct: 122 DRLRAAQERELTMTIMEIVGVEAVRVHIAKAERSVFVREDVAPSASIMVRLARGRQLTDG 181 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246 AI +LVA +VP L + V V+D GKLLT R+ + + ++ ++ ++ Sbjct: 182 QVVAITNLVAGSVPGLSIDAVKVVDQHGKLLTQ---ARDPHSGRIDLQAQMEAKLNSQVS 238 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVER-SIRLSKDAQRSETSQPE-- 303 + L G F + V EL+M+ YD D V R + + S+ + + P Sbjct: 239 QLLTPMFGAGAFTAQVQVELDMNEVTSARESYDKDGTVRRETTQQSQSSDVTAGGIPGVL 298 Query: 304 -SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 + E + + + YE+ + + + ++ LS+AV Sbjct: 299 ANTPPAEGEARQGAPNDTQQGNTAGGIGESSATRVYELGREVLVSNLSPGSVKYLSVAVA 358 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 +++ L + + + ++ ++V+AA G RGD +T+ F + + Sbjct: 359 IDQAALAKA---------SAADINKVKELVTAAVGAREDRGDKVTVVMRPFEKIEAEEVP 409 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482 + S+ + R+ ++ L+ L+ + L + G S + Sbjct: 410 FYETSWFAMAVRNGVAILAVLLVLLLAVRPAIKALRGM---------------GVSDKTA 454 Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 V + D S N++ L R+ + L L ++ + Sbjct: 455 GSSGEGVALPIPTYDIEGTTSLNRETLDGQIELAQRVARENPDDAVLALRRLLAED 510 >gi|126653749|ref|ZP_01725667.1| flagellar M-ring protein [Bacillus sp. B14905] gi|126589713|gb|EAZ83849.1| flagellar M-ring protein [Bacillus sp. B14905] Length = 531 Score = 257 bits (656), Expect = 4e-66, Method: Composition-based stats. Identities = 99/570 (17%), Positives = 214/570 (37%), Gaps = 63/570 (11%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 I + QF+KS + + + +++ ++ I L FF + Y LY L ++ Sbjct: 7 KIKNDTSQFWKSRS---KKQKIVMVGSLVGVIALAAIVTFFASKTTYVPLYKDLSTREIG 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 ++ AL + ++I+ G+SI VP V + LA++G P + + Y F + FG Sbjct: 64 QVKEALDSQGVTYQIAPGGTSILVPEEQVDSLLVQLASEGYPQTGT-IDYS-FANSSGFG 121 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI-GARPTASVMIRAI 180 +T + + A E EIA+ +++ G+ A+V I +P+ G F TAS+++ Sbjct: 122 MTDNEFNLLKKAATETEIAKLFRNLEGVKDAKVMITVPEEGVFVTDVKEDATASIVLNTD 181 Query: 181 NPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-----TANEMERNILGKSLSI 233 + + +LV+ ++PNL ++ + + + T + L + Sbjct: 182 PGYKFTEQQITTMYNLVSKSIPNLKTENIVISNQFSEYFDLNAATTDGTSTATAEGQLQM 241 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP------DSKVERS 287 + ++ +++ + L +G D +V +++ + E + P + + Sbjct: 242 KKLVERDLQRQVQNMLGTLMGQDKVMVSVTTDIDFKKENREENLVTPVDEENMEGIAISA 301 Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 R+++ + + E + + + + ++ EE N ++N Sbjct: 302 QRITEQYSGTGAAAATGTPEAETTTDNFTTYNEGTSGNG-DYERTEETINNDVNRIRKDI 360 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLG-RSADQGKIDSYLAEINKIVSA---ATGINSRRG 403 YK++ + I V+V T+ + I+ L+ I + + A + + Sbjct: 361 QEAPYKVQDIGIQVIVEPPTATDAASLPDGVREDIEKILSTIVRTTISKDVAAELTQEQI 420 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 D S+ Q QV+ + + VI ++ V LL F+ R Sbjct: 421 DEKVAVSV-----QPLYGKATQVADEKPMIPWWVWVIGGILLAVIVLLAFFIIRSRKR-- 473 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 + L +++ +D N++I + Sbjct: 474 --------------------AQEEEELSILEEQEDLMIDDINEEIETE------------ 501 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSE 553 + +L M + + FAK+LR W + Sbjct: 502 ATMRRKQLEKMAKDKPDDFAKLLRSWIAED 531 >gi|254436608|ref|ZP_05050102.1| flagellar M-ring protein FliF [Octadecabacter antarcticus 307] gi|198252054|gb|EDY76368.1| flagellar M-ring protein FliF [Octadecabacter antarcticus 307] Length = 602 Score = 255 bits (652), Expect = 1e-65, Method: Composition-based stats. Identities = 103/568 (18%), Positives = 215/568 (37%), Gaps = 61/568 (10%) Query: 44 NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP 103 +P L+ L ++ + AL +D +I I+VP + +R+ LAAQGLP Sbjct: 37 QAPQRTTLFASLPEAEKAAVMDALRNNGMDVQIDSTTGDITVPVADYHSSRMSLAAQGLP 96 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 S + GY + G + ++ + ++ E E+AR+I I+ I A+RVH+ +P+ + Sbjct: 97 QSMPD-GYSVL-SDMPMGTSRSVENMRLKQSQEIELARSINEINVISASRVHLAIPERSA 154 Query: 164 FRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-- 219 F + PTASV ++ + AI +LV+++V NL VTV+D G+LL+ Sbjct: 155 FARNAQNPTASVFLQVQAGRSLSEQQVMAIVNLVSSSVANLPRTSVTVVDQNGRLLSDTV 214 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 ++ ++ + L ++ + L +G N + V +++ + E + Sbjct: 215 DDPATDLADRQLEYRLRLEEIYRARVENLLTPIVGPGNVSAQVSLDIDFTQTERTEDLVI 274 Query: 280 PDSKVERSIRL--SKDAQRSETSQPESAVTVEQNMPH----------------------- 314 P + S ++ +D P + P Sbjct: 275 P-GRALLSEQVALEEDVIAQMGGIPGAVANTPPPRPELDGAPPADGAAPPADGAAPPADG 333 Query: 315 ------------------VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 L NYEI+ A + ++ Sbjct: 334 AAPPADGAAPPADGAAPPADGNGQGLASEESRVRSTNSLRNYEISRSITAQSSPMAQIVS 393 Query: 357 LSIAVVVNKGR-----LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 + +AV++ + L G +++ ++ +VS GI+ RGDT+ ++S+ Sbjct: 394 VQVAVLLREQPSAVEGLDAEDSIPPQVGFDPAWIDDVRGLVSRTVGIDESRGDTLIVSSL 453 Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 F+ + S + D L V A+ ++ +++ + L ++ L + Sbjct: 454 PFISTEAVFSSMSEN--TDFLWYEDPWVREAVRNVLMVMVLAVVTLGLIKPLLMQFLSAP 511 Query: 472 GE---VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 GE + G + + + + + M D + + +++ S Sbjct: 512 GEGMMMPGNTGTAGGGVLTDMDVIEMEEGQTLEDIKAKLKPKKTTISAEMLDTANSYDDK 571 Query: 529 LRLLHMIEINE-ERFAKILRKWARSEIE 555 + L+ MI +E R + + + + +++ Sbjct: 572 VALIRMIVSDEAGRVSNVFKAFMEDDMD 599 >gi|116327841|ref|YP_797561.1| flagellar MS-ring protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330717|ref|YP_800435.1| flagellar MS-ring protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116120585|gb|ABJ78628.1| Endoflagellar biosynthesis/type III secretory pathway protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124406|gb|ABJ75677.1| Endoflagellar biosynthesis/type III secretory pathway protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 566 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 115/591 (19%), Positives = 218/591 (36%), Gaps = 67/591 (11%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 IL+ + +FF T+L T+ LIL V L ++ + L+ L D Sbjct: 7 KILNNIREFF---TTLDTTKKLILGGVALTVLVAIGILSTISLQKNRVVLFKDLTSKDFA 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 ++ L + S + S I+V + LA + L + G+ELF V+ F Sbjct: 64 EVTKKLDSLGYQYG-SSDTSVITVDPEQRQEIVTKLAQENLIPAGVQ-GWELF-NVDKFT 120 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 T F ++I + RAL+G I +++ ++ + A V+I P+ F + ASV++ I Sbjct: 121 ETQFDKDIKKYRALKGAIEQSLMTLRSVDKAYVNIAFPEDELFSSNSSPVKASVILHYIP 180 Query: 182 P---SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI- 237 K + I +LV+ AVP L +V+V D+ GK+++ E + L IVQ Sbjct: 181 GVESLSRKEVKGIVNLVSRAVPKLKPENVSVADADGKIISDFEEDLEKERLELRIVQEKL 240 Query: 238 ----QHEIEMNI--NKALAAFLGVDNFRSAVVAE--LNMDTQQIREIVYDPDSKVE---- 285 + I+ I L LG ++ E LN D + ++ P + Sbjct: 241 RIGEEQRIQRLIDMRNTLRWLLGGEDRVDITRFEYNLNWDKESYKDNSVSPVVAIPDNPN 300 Query: 286 ---------------RSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD 330 S + +K+ + P+ E N+P Sbjct: 301 TPYSELKLVDGYSLKVSSKETKEDFKGRGFTPDGPAGTEPNIPPGYKDTD---YQKSEYS 357 Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA-----DQGKIDSYL 385 K E +NYE N + +K+E+++++VV++ + + L Sbjct: 358 KSENINNYEFNRRVSEVQKQPWKVEKVNLSVVIDGMWEKKEKEDGTGYDRKYIPVSEDEL 417 Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445 +I K + +A GI+ RGD I++ ++ + F + ++ + + + ++ Sbjct: 418 RQIRKNLESAVGIDKARGDQISVITIPKDRSSQFAAEDEELRKQKAIRQMIIASLVIIL- 476 Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505 L+V+ L A+++ + E + V ++LD Sbjct: 477 ---LLIVSILVYRAIKKEIARRRRLREEELAAQQQMMREAALRVMDEGGAEVELSLDEKY 533 Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIED 556 + + ++ E A++LR W E Sbjct: 534 RRELLENAI------------------NLAREKPEEVAQLLRTWLSEEEAS 566 >gi|254499113|ref|ZP_05111803.1| truncated flagellar M-ring protein FliF [Legionella drancourtii LLAP12] gi|254351652|gb|EET10497.1| truncated flagellar M-ring protein FliF [Legionella drancourtii LLAP12] Length = 403 Score = 253 bits (646), Expect = 6e-65, Method: Composition-based stats. Identities = 103/429 (24%), Positives = 190/429 (44%), Gaps = 57/429 (13%) Query: 52 YVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGY 111 + L+ D N++ L + NI +++ G I + +V K R+ + GL + N G+ Sbjct: 2 FSHLDEQDANKVLSQLEQENISYQVRHGGQDILIDKDLVAKTRLKIMGSGLQLAG-NVGF 60 Query: 112 ELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARP 171 ELFDK N FG+T F Q+I RAL+GE+ RTI S I ARVH+V+P+ F +P Sbjct: 61 ELFDK-NDFGMTDFSQKINYQRALQGELERTISSFDEIRQARVHLVIPETHLFDHEENQP 119 Query: 172 TASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL 231 A++ + + +I+ LVAA+V +L + +V V+D G L+ E ++ Sbjct: 120 KAAITLHLKQALTNQQVRSIQQLVAASVAHLSLKNVVVVDQNGNTLSQ--TEEDLSSTHF 177 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + + I+H + + + L + + AE+N D +++ + P +K + I Sbjct: 178 ASKKNIEHYLNDKVTQMLHKIFAKNQVMVKINAEINYD--ELQRELIKPQTKGQ--ITHE 233 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 K+ + S TV++ ++ + L ++ YE ++ + Sbjct: 234 KEIKHS---------TVDKKGKQKGNQDLTLEKT------------YEFGSEKELFKRAS 272 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 +ERLSI+VV+ Q +A++ +++ G N +RGD I++ ++ Sbjct: 273 GTIERLSISVVI-------------PQYTDAKTIAQVQRLIKNTVGFNEKRGDVISVEAL 319 Query: 412 ----DFL--ENQLFNSGTVQV----SFMDILSRHF-----ATVINALVFLVGTLLVTFLG 456 F + T Q SF + + ++ I AL+F + L Sbjct: 320 IAQPVFSTKRPSPILNATPQTAMTISFWETMHTYWDKDKQWQAILALLFFIALSSSGALV 379 Query: 457 LHALRRLHN 465 L ++R+ Sbjct: 380 LRSIRQKKR 388 >gi|331005448|ref|ZP_08328827.1| Flagellar M-ring protein fliF [gamma proteobacterium IMCC1989] gi|330420724|gb|EGG95011.1| Flagellar M-ring protein fliF [gamma proteobacterium IMCC1989] Length = 469 Score = 253 bits (646), Expect = 6e-65, Method: Composition-based stats. Identities = 95/437 (21%), Positives = 171/437 (39%), Gaps = 45/437 (10%) Query: 14 GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73 + +ILA V ++ +++ + + +Y +L+V LE D I L + Sbjct: 2 LNGFSKQSKIILAVVSIILLIILGFTAQWALNKNYQSLFVGLEPKDSAAIVQQLDALKAE 61 Query: 74 FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 +RI+ ++ VPSS V R+ L + S GYE+FD + FG+T F Q I R Sbjct: 62 YRINKETGNVEVPSSQVHSTRLQLMGTDVTISGG-VGYEIFD-NSDFGMTEFAQRINYQR 119 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEAI 191 ALEGE+ RTI S+S + +RVH+V+P+ FR+ +P+ASV + I Sbjct: 120 ALEGELQRTITSLSQVKKSRVHLVLPERSLFRENKEQPSASVTLIVKKGMSLTGTQISGI 179 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK---SLSIVQAIQHEIEMNINKA 248 + LV+++V L V + D G L+ I L + I+ + +++ Sbjct: 180 QRLVSSSVSGLKEPMVIINDQQGVTLSQEIPADEIAQAIPWRLKQKKDIESYLTEKVSRV 239 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308 L + ++ ++ + + E P ++ + R + + V Sbjct: 240 LRYAFKDGDIAVSIDVIIDFNYTKKMEEKVIPLAEGKAISREKESFIGGNKKTKNNNSNV 299 Query: 309 EQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368 +++ YE+ TT K+++LSI +++ Sbjct: 300 T------------------------KETEYEMGRSVAETTESPGKIQQLSIGIIL----- 330 Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI-TSMDFLENQLFNSGTVQVS 427 + ++ E+ ++V G N RGD I I TS+ E + Sbjct: 331 --------TKFLSENDKQELQRLVETTVGFNENRGDHIAIYTSLAIPETKEMGDKPALSV 382 Query: 428 FMDILSRHFATVINALV 444 L H + V Sbjct: 383 QPKTLDDHLPPIKKVQV 399 >gi|310641543|ref|YP_003946301.1| flagellar m-ring protein flif [Paenibacillus polymyxa SC2] gi|309246493|gb|ADO56060.1| Flagellar M-ring protein FliF [Paenibacillus polymyxa SC2] Length = 527 Score = 253 bits (645), Expect = 8e-65, Method: Composition-based stats. Identities = 102/564 (18%), Positives = 222/564 (39%), Gaps = 59/564 (10%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 D++ ++ + + + + ++L S + I+ + Y+ + L +D + Sbjct: 9 RDKISGYWNNFS---KKQKILLVSTLAFIIIAIVVLTMQFTKTEYEVAFQDLNANDAAGV 65 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L A I ++++ G+ ISVP++ KA++ + +QGL S ++ G+T Sbjct: 66 IKYLDSAGIPYQLNAGGTQISVPTANADKAKVDVGSQGLIQKGSIGMSAFDQSSSAIGMT 125 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARPTASVMIRAIN 181 + AL GE+ + ++ + G+ +++ I MP F + + +ASV + Sbjct: 126 ENEFNVKYNNALNGEVQQLLERMDGVQSSKAVINMPKENIFAGLEEKDKASASVQMEFEP 185 Query: 182 PSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN----ILGKSLSIVQ 235 + +LV AVPNL + ++T+ + +L+ + + + +++++ + Sbjct: 186 GFTPNQQAIDGYFNLVKTAVPNLPVENITITNKEYELIPTAKGGQGGLTSGVQENMALQK 245 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK-----VERSIRL 290 + ++ N+ + L+ +G D V+++LN D +E + P + +E S + Sbjct: 246 KFESDVRNNVQQFLSKIVGDDKVNVLVMSQLNFDKVTSKEQMVTPVDQTKMKGIEISAQQ 305 Query: 291 SKDAQRSETSQPES-AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 +++ + Q A T Q++P S +DK NYE+N + Sbjct: 306 IQESYTGSSGQTGGVAGTGTQDVPGYPGGANSGNTS---SDKSSSTINYEVNRIARDIIQ 362 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 Y ++ L+I V V + L +A Q I + L I + A +G D Sbjct: 363 SPYTVKDLTINVAVEPPTGQQTLD-TATQTAIQNILVNIVRASLANSGTTFTDADLAKKV 421 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 S+ F +Q + T +F S + I A V + ++ F+ + + Sbjct: 422 SV-F--SQAAPAPTSTNTFFS-ASNPWMWGIGAAVLALLAGVIFFIVR-------SRRNQ 470 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 ++ ++ P ++T + N++ Q Sbjct: 471 EEELDEELQLMPTPTEFPSITMESVTNES---------------------------QVRK 503 Query: 530 RLLHMIEINEERFAKILRKWARSE 553 +L + + + F +LR W E Sbjct: 504 QLESLAKKKPDEFVNLLRTWLADE 527 >gi|302338077|ref|YP_003803283.1| flagellar M-ring protein FliF [Spirochaeta smaragdinae DSM 11293] gi|301635262|gb|ADK80689.1| flagellar M-ring protein FliF [Spirochaeta smaragdinae DSM 11293] Length = 569 Score = 252 bits (644), Expect = 1e-64, Method: Composition-based stats. Identities = 109/592 (18%), Positives = 228/592 (38%), Gaps = 73/592 (12%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVK-LEVSDV-N 61 +DQL + + + + LILA+V++V ++ + +P L + D + Sbjct: 9 IDQLKALWGKWSMVQK---LILAAVVVVAVVGIVLMLHVSATPSMVPLITAPITDQDKLD 65 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIH-LAAQGLPSSSSNSGYELFDKVNSF 120 +ISV L E ++ I+ G I VP + + LA + L + ++ +++F K++ + Sbjct: 66 KISVRLDEEGVEHTITAEG-LILVPDKRTAQRMVSILAREDLIPADTSP-WDIF-KMDRW 122 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 LT F + + RA+ + + I+++ + A+V +V+P+ F++ TASV+I Sbjct: 123 TLTDFERNVNLRRAITENLEQHIEALEDVDNAQVTLVLPEDKLFQEDQNPVTASVIITPR 182 Query: 181 NPSVYKS----AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-----ILGKSL 231 S E I LV AV L ++ + D G +L + + + L Sbjct: 183 PGSDITQSRSKIEGIVKLVRLAVEGLKDENIVISDQRGVVLNDFADMADFDRLELSKRQL 242 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRS-AVVAELNMDTQQI-REIVY-------DPDS 282 Q ++ + I ++ G D V +L+ + + E + +P++ Sbjct: 243 DQKQRLEATYKNQIFTEMSQIFGSDRVSILKVDIDLDFRKETVSTEEHFPVTTVEDNPNT 302 Query: 283 K---------VERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKE 333 + RS + K+ + PE E P + + N +K Sbjct: 303 PYNEREYVLSIPRSSEIVKEEFKGTGFNPEGPPGQEGQTPPAYKD---MNNLVGNYNKNS 359 Query: 334 EQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL------------TEVLGRSADQGKI 381 E N E+NT++I + + R+++ V V+ T+ Sbjct: 360 EIINQEVNTRNIVEEKSPWTIRRITVGVAVDGVWRWSYNENGTVKLDTDGSIEREYTPVS 419 Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441 D L + ++ A G N RGD++T+ + F + F D R + Sbjct: 420 DEDLNKAQTLIEHAVGFNRERGDSVTVQHIQFDRSNQFAQE-------DEHFRAQKRLQQ 472 Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501 A+++ + L V + R + + ++ + + A AL Sbjct: 473 AILYSIIGLAVIIVAFIVFRLISRELERRRRLREEELARQHQMMREA-----------AL 521 Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ ++ + +++ R + + + +M + E A+++R W E Sbjct: 522 RNAEEEEMEVAMSVEERARMEMQENAI----NMAREHPEDVAQLIRTWLAEE 569 >gi|24215291|ref|NP_712772.1| flagellar MS-ring protein [Leptospira interrogans serovar Lai str. 56601] gi|24196388|gb|AAN49790.1|AE011426_5 flagellar MS-ring protein [Leptospira interrogans serovar Lai str. 56601] Length = 565 Score = 252 bits (644), Expect = 1e-64, Method: Composition-based stats. Identities = 120/593 (20%), Positives = 228/593 (38%), Gaps = 74/593 (12%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 IL+ + +FF T+L T+ LIL V L ++ + L+ L D Sbjct: 7 KILNNIREFF---TTLDTTKKLILGGVALTVLIAIGILSTISLQKNRMVLFKDLTSKDFA 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 ++ L + S + S I+V + LA + L + G+ELF V+ F Sbjct: 64 EVTKKLDSLGYQYG-SSDTSVITVDPEQRQEIVTKLAQENLIPAGVQ-GWELF-NVDKFT 120 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 T F ++I + RAL+G I +++ ++ + A V+I P+ F + ASV++ I Sbjct: 121 ETQFDKDIKKYRALKGAIEQSLMTLRSVDKAYVNIAFPEDELFSSNSSPVKASVILHYIP 180 Query: 182 P---SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI- 237 K + I +LV+ AVP L +V+V D+ GK+++ E + L IVQ Sbjct: 181 GVESLSRKEVKGIVNLVSRAVPKLKPENVSVADADGKIISDFEEDLEKERLELRIVQEKL 240 Query: 238 ----QHEIEMNI--NKALAAFLGVDNFRSAVVAE--LNMDTQQIREIVYDPDSKVE---- 285 + I+ I L LG ++ E LN D + ++ P + Sbjct: 241 RIGEEQRIQRLIDMRNTLRWLLGGEDRVDITRFEYNLNWDKESYKDNSVSPVVAIPDNPN 300 Query: 286 ---------------RSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD 330 S + +K+ + P+ E P+++ Sbjct: 301 TPYSELKLVDGYSLKVSSKETKEDFKGRGFTPDGPAGTE---PNIAPGYKDTDYQKAEYS 357 Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA-----DQGKIDSYL 385 K E +NYE N + +K+E+++++VV++ + + L Sbjct: 358 KAENINNYEFNRRVSEVQKQPWKVEKVNLSVVIDGVWEKKEKEDGTGYDRKYVPVSEDEL 417 Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445 +I K + +A GI+ RGD I++ ++ + F S ++ + R ++ Sbjct: 418 RQIRKNLESAVGIDKARGDQISVITIPKDRSAQFASEDEELRKQKAI-RQMIIASLIIIL 476 Query: 446 LVGTLLVTFLGLH---ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALD 502 L+ ++ + + A RRL + A + ++ ++ L + +++ A Sbjct: 477 LLIVSILVYRAIKKEIARRRLREEELAAQQQMMREAALR------------VMDESGAEV 524 Query: 503 SSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + D L++ IN + E A++LR W E Sbjct: 525 ELSLDEKYRRELLENAIN-------------LAREKPEEVAQLLRTWLSEEEA 564 >gi|297584035|ref|YP_003699815.1| flagellar M-ring protein FliF [Bacillus selenitireducens MLS10] gi|297142492|gb|ADH99249.1| flagellar M-ring protein FliF [Bacillus selenitireducens MLS10] Length = 528 Score = 252 bits (644), Expect = 1e-64, Method: Composition-based stats. Identities = 108/575 (18%), Positives = 224/575 (38%), Gaps = 81/575 (14%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++ +F++S + + R L++ +V+L+ I +A + + + LY L + + I Sbjct: 9 REKATEFWQSRSK--KQRGLLIGAVVLI-IAFIIALSWVGSRTNLVPLYSNLTIQETGEI 65 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L I +S +G+SI VP + V ++ LAA+G+P + Y F FG T Sbjct: 66 KANLDGRGIQNEVSADGTSILVPETAVDNLKVELAAEGIPQTGR-IDYGTFGDNMGFGTT 124 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG-ARPTASVMIRAINP 182 ++ AL+ + I+++ G+ A+V I +P+ + + + TAS+++ Sbjct: 125 DSEFQLLERAALQTTLEDLIRNVDGVTNAQVMITLPEESVWLQETPSEATASILLNMQAG 184 Query: 183 --SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS-------I 233 ++ HL + +VPNL + ++ ++D + L E + + SLS I Sbjct: 185 YSLDESQIRSLYHLASRSVPNLPVENIVIMDQFSRYLEL-EDQPGMADSSLSVYEQHRAI 243 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-DSKVERSIRLSK 292 + I+ +++ ++ + L +G D ++ +L+ + E + +P D + I +S Sbjct: 244 QRDIERDLQRDLQQMLGTMMGPDKVLVSISTDLDFTEENRTEDLVEPVDEENMEGIAISV 303 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPL------PRSLENTDKKEEQSNYEINTKSIA 346 + S + A + +P + +P + + EE+ N ++N Sbjct: 304 ERITETFSGEDIA---DGGVPGAGEDDIPNFPGVGAGAGAGDYELIEERINNDVNRIHRE 360 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT--------GI 398 T Y+L +SI V+V ++ S Q +D A + +IV G Sbjct: 361 ITESPYQLRDISIQVMVEPPDPEDIG--SLPQQTLDDIQAMLTQIVRTTIPDEVTAEWG- 417 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + D + ++ +F F + + ++ ALV L V Sbjct: 418 DEELADRVLVSPQEFFGRVEFEEPQTGIPWW-------YFLVGALVLGAVILAVVL---- 466 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 LRR + + + S+ D + + + Sbjct: 467 -LRRGREEEVTE------------------------------VASAEDDFRLPPIDKKPQ 495 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 KQ +L + + + F+K++R W E Sbjct: 496 TEEGARKQ---QLEDLAKDKPDEFSKLIRTWLSDE 527 >gi|308068652|ref|YP_003870257.1| flagellar M-ring protein FliF [Paenibacillus polymyxa E681] gi|305857931|gb|ADM69719.1| flagellar M-ring protein FliF [Paenibacillus polymyxa E681] Length = 527 Score = 252 bits (644), Expect = 1e-64, Method: Composition-based stats. Identities = 107/564 (18%), Positives = 224/564 (39%), Gaps = 59/564 (10%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 D++ ++ + + + + ++L S + I+ + Y+ + L +D + Sbjct: 9 RDKISGYWNNFS---KKQKILLVSTLAFIIIAVVVLTMQFTKTEYEVAFRDLNANDAAGV 65 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L A I ++++ G+ ISVP++ KA++ + +QGL S ++ G+T Sbjct: 66 IKYLDSAGIPYQLNAGGTQISVPTANADKAKVDVGSQGLIQKGSIGMSAFDQSSSAIGMT 125 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-INP 182 + AL GEI + ++ + G+ +++ I MP F + + AS I+ P Sbjct: 126 ENEFNVKYNNALNGEIQQLLERMDGVQSSKAVINMPKENIFAGLEEKDKASASIQMEFEP 185 Query: 183 SVYKSAEAI---RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN----ILGKSLSIVQ 235 + +AI +LV AVPNL + ++T+ + +L+ + + + +++++ + Sbjct: 186 GFTPNQQAIDGYFNLVKTAVPNLPVENITITNKEYELIPTAKGGQGGLTSGVQENMALQK 245 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK-----VERSIRL 290 + ++ N+ + L+ +G D V+++LN D +E + P + +E S + Sbjct: 246 KFESDVRNNVQQFLSKIVGDDKVNVLVMSQLNFDKVTSKEQMVTPVDQTKMKGIEISAQQ 305 Query: 291 SKDAQRSETSQPES-AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 +++ + Q A T Q++P S +DK NYE+N + Sbjct: 306 IQESYTGSSGQTGGVAGTGTQDVPGYPGGANSGNTS---SDKSSSTINYEVNRIARDIIQ 362 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 Y ++ L+I V V + L +A Q I + L I + A +G D Sbjct: 363 SPYTVKDLTINVAVEPPTGQQTLD-TATQTAIQNILVNIVRASLANSGTTITDADLAKKV 421 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 S+ F +Q + +F + + A++ L+ V FL + R+ D Sbjct: 422 SV-F--SQAVPAPASTNTFFSASNPWLWGIGAAVLALLAG--VIFLIVRGRRKQEEELDE 476 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 ++ P ++T + N++ Q Sbjct: 477 ------ELQLMPTPTEFPSITMESVTNES---------------------------QVRK 503 Query: 530 RLLHMIEINEERFAKILRKWARSE 553 +L + + + F +LR W E Sbjct: 504 QLESLAKKKPDEFVNLLRTWLADE 527 >gi|288553065|ref|YP_003425000.1| flagellar MS-ring protein [Bacillus pseudofirmus OF4] gi|288544225|gb|ADC48108.1| flagellar MS-ring protein [Bacillus pseudofirmus OF4] Length = 524 Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats. Identities = 108/573 (18%), Positives = 216/573 (37%), Gaps = 82/573 (14%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ +F+ T ++ I A + +L + N + LY L + + +I Sbjct: 10 QKVTEFWSGRTKKQKS---IYAGAFIAVALLLILLLLLGNRSNNVPLYSNLTLQETGQIK 66 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L I ISDNG++I VP +MV ++ LAA+G+P S S Y F FG+T Sbjct: 67 ETLDARGIPAEISDNGTTILVPEAMVDSLKVDLAAEGIPRSGS-IDYSFFQDQMGFGMTD 125 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARP-TASVMIRAINP- 182 + ++ E+ I++I+G+ A V I +P+ + TAS+++ Sbjct: 126 NEFSVMERGLMQTELQDLIRNINGVNHANVMITLPEESVWLNTTQEAATASIVVDLAPGY 185 Query: 183 -SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSLSIVQA 236 +A+ HLV+ +VPNL + ++ +++ + + + + +I + Sbjct: 186 QLDQNQVKALYHLVSKSVPNLPIENIVIMNQMFEDYFYDNDGNQSTTLSAFEQQRTIQRE 245 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE---IVYDPDS--KVERSIRLS 291 I+ ++ +N+ + L +G D +V +++ + +E DP++ + SI Sbjct: 246 IERDLTLNLQRMLGTVVGQDKVLVSVTTDIDFTQENRQESLVEPVDPENIEGIAVSIERV 305 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + E + + +P+ + + ++ E++ N E+N + Sbjct: 306 TETYTGEGTPAGGVEGTGEGIPNF---PGAVGQGESEYERTEDRINNEVNRINRDIVESP 362 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT-----------GINS 400 YK+ L I V+V +VL Q ++D + IV + GIN Sbjct: 363 YKIRDLGIQVMVEPPEGMDVL----PQERLDDIQQILGTIVRTSISGVYADELTEAGINE 418 Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460 + I ++S F + TVI +++V +LV + L + Sbjct: 419 K----IYVSSQPFEGKPDTTQAPL-------------TVIPVWMYVVAGVLVVIIILLIV 461 Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520 + ++ E+ + + P TG Sbjct: 462 LLMRKRKQEEEEELVIQQQAAVVPDLPDEDTGESATKR---------------------- 499 Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 +L M + E F+K+LR W + Sbjct: 500 --------KQLERMAKEKPEEFSKLLRTWLSED 524 >gi|172057888|ref|YP_001814348.1| flagellar MS-ring protein [Exiguobacterium sibiricum 255-15] gi|171990409|gb|ACB61331.1| flagellar M-ring protein FliF [Exiguobacterium sibiricum 255-15] Length = 522 Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats. Identities = 94/558 (16%), Positives = 193/558 (34%), Gaps = 58/558 (10%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 L ++ + + + I+ +IL I + A +++ P LY KL + +++ Sbjct: 12 LKTTWQEWSLVKKATII---GIILFLIAAIIVAAIWLSKPTMTPLYSKLSPQEAGQVTEK 68 Query: 67 LSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L+E + + +G +I VP ++ LA G+P S Y F + FG T Sbjct: 69 LNEDGVKSEVVSGTDGVTILVPEESAENLKVELATAGIPKSG-QIDYSFFSENAGFGTTD 127 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAINPS 183 I ++ E+ I ++GI AA+V I +P+ F T SV++ + S Sbjct: 128 KEMNILERDTMQTELENLITQVNGIDAAKVMITLPEKSVFLSDKEETSTVSVVLTSSAGS 187 Query: 184 VYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS-LSIVQAIQHE 240 + + HL+A ++PNL ++T++D + + G + + + + + Sbjct: 188 DLNQQTVQGLYHLIAKSIPNLKEENITIMDQYFTYYEPGKGAQTAGGTDPMQLKKTTEKD 247 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-DSKVERSIRLSKDAQRSET 299 + I + L+ LG +V A++++ +Q + + +P D I S + Sbjct: 248 LRQQIQQMLSVVLGPQKALVSVTADVDVTQRQEEQKLVEPVDPDKIEGIVTSAEKVAEAY 307 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + + T + + + ++K + NYE+N + T Y++ L I Sbjct: 308 TGAANEGTAGTGENETINFPQGTGTTGDTSEKTHDIINYEVNRITKQITGAPYEIRDLGI 367 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG----INSRRGDTITITSMDFLE 415 V+V + + + I ++ ++ + + + S F E Sbjct: 368 QVIVEPPKGQNQIDPQLQTDLQTMMYSIIRTSLTKTDAKTTLTDAELANKVVVMSRPFAE 427 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 T L+V +RR + + E Sbjct: 428 TPKQTVTTETTPMWVWF-----------ALGAAALVVIGAIFLLMRRRKTAEIEELEEWT 476 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 P + + G + +L + Sbjct: 477 PIETEVPELSTEDTSDGAV--------------------------------KRKQLEKLA 504 Query: 536 EINEERFAKILRKWARSE 553 N + FAK+LR W + Sbjct: 505 ASNPDEFAKLLRTWLAED 522 >gi|300871679|ref|YP_003786552.1| flagellar M-ring protein FliF [Brachyspira pilosicoli 95/1000] gi|300689380|gb|ADK32051.1| flagellar M-ring FliF protein, FliF [Brachyspira pilosicoli 95/1000] Length = 562 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 116/592 (19%), Positives = 224/592 (37%), Gaps = 73/592 (12%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVK-LEVSDV 60 ++ Q+ F T + + IL V++V + +A FF + L+ L D Sbjct: 3 KLIGQVKNIFAKTTKVQK---AILIGVLVVALGAIVATVFFTSRRAGTLLFQNALTQEDA 59 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 + L NI ++ NG + KA + L +G + G+ELFD Sbjct: 60 RNVIAVLDANNIKYQYR-NGFITLNNEADKAKAELELVKEGRMPMGVD-GWELFDA-PRI 116 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 G+T +I + R+L I + + + + A V + P + + TASV+I+A Sbjct: 117 GITDAELDINKRRSLTKAITQLLTKLDFVQEATVDLAFPKKEYLTDVDSPVTASVVIKAQ 176 Query: 181 N-----PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-----ILGKS 230 K+ ++ L+A V L VT+ DSTG +LT E + + Sbjct: 177 PFKEEILRDPKTVRGLQQLIAMGVDKLKPEFVTITDSTGYVLTDFTDEAANLKLKVAQEE 236 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---------- 280 L IV + +IE I + L + + + EL D I + P Sbjct: 237 LKIVDRERKKIENKIRQTLGRIY-TNRVETTIALELIWDDISITNNLVLPIILKEDDPAT 295 Query: 281 -------DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKE 333 +KV+ S R + + + P+ A E+N+P K ++ TD ++ Sbjct: 296 PYDDSQFTNKVQVSSRTVTEDWKGQQFIPQGAAGAEENVPPGYKDKTDRWQTYTKTDSQD 355 Query: 334 EQSNYEINTKSIATTHDNYKLERLSIAVVVNKG--RLTEVLGRSA----------DQGKI 381 NYE++ + A +Y++ ++S AV ++ ++ + G + Sbjct: 356 ---NYELSKRYEAIKKGSYQIGKISAAVALDGRWTKVYDANGNAIITNGSSYLREYHPVT 412 Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441 + + +V AA G + +RGD +++T + F FN+ ++ + + R Sbjct: 413 ADEIKNVTALVQAAIGYDLKRGDQVSVTHIQFDHWDRFNAEDAKLLRNNFIKR------- 465 Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501 L+ + LL F+ + +R + + + M A+ Sbjct: 466 VLIISMIGLLALFILVLIIRSIQK-----------ELARRRRLREEELERKQMEMRRQAM 514 Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++N++ S + K+ ++ + E A++LR W + Sbjct: 515 MNANEEPMSEI-----NLEDAARKKLMEEVIRVSHERPEDVAQLLRTWMADD 561 >gi|51894139|ref|YP_076830.1| flagellar basal-body M-ring protein [Symbiobacterium thermophilum IAM 14863] gi|51857828|dbj|BAD41986.1| flagellar basal-body M-ring protein [Symbiobacterium thermophilum IAM 14863] Length = 576 Score = 251 bits (640), Expect = 3e-64, Method: Composition-based stats. Identities = 121/589 (20%), Positives = 242/589 (41%), Gaps = 63/589 (10%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 ++ ++ Q + + R L +LV + L +A ++N P ++ Y + S+V+ Sbjct: 8 VMGRVKQIWGGMSRPVRW----LTVGLLVALALSLAVAVYLNRPRWEVFYKASDPSEVST 63 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + L E + R++ NG I VP+ A + A GLPSS + G E+F + FG Sbjct: 64 LVAHLDELGVPSRVTGNGLVIEVPARERSAANLAKAQAGLPSSG-HVGLEIFAQPQ-FGA 121 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T F +++ RA+EGE++R++ I+ I A+V++ +P+ F + P+A+V+++ + Sbjct: 122 TEFDRQVNYKRAMEGELSRSLMRIADIEYAKVNLNVPEKSVFVRDEEPPSAAVLVQLRSG 181 Query: 183 SVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239 + AI + VA++V L VTV+DS G+ L A++ + + ++L+ + + Sbjct: 182 RTLDADNVTAIINFVASSVEGLTPDRVTVIDSQGRELRPADDDAQRLDAEALAFQRQREE 241 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 ++ + + L G N ++V EL+ + + E + V S + + Sbjct: 242 QLTQKLLQVLEPIFGRGNVAASVTVELDHQSSRTEERIVGQGVPVATVSERSGSQTQGTS 301 Query: 300 SQPESAVT---VEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTH 349 ++P T + P V+ VP S E+ + E Y++ ++ T Sbjct: 302 TEPAPVSTQLPGQGETPGVTAPAVPIYQEPSVSTESGESYQSRTETR-YDVGERNQVTVS 360 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 ++R+S AV +N+ LT S + I + ++ATG ++ D +T+ Sbjct: 361 PAGSVKRISAAVTINQDTLT------------QSEIDLIRQHAASATG--AQLSD-VTVL 405 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 +M F ++ SR F A+ + + L+ L RR + A Sbjct: 406 AMSFRPTAQADAAPPAPEAAAG-SRLFDARALAIGLGIASFLLILAALLTRRRESEPEFA 464 Query: 470 KKGEVG-------GKSILSPPPISS------------------AVTTGLMPNDNIALDSS 504 G + P P+ A T + + Sbjct: 465 LPGHPAVGTALDVALGLDQPLPVQQAAAAEAAPAAPEAPEAAPAEETDVQITGEMTAAEK 524 Query: 505 NQDIFSHSRNLQSRI--NSYVSKQSDLRLLHMIEINEERFAKILRKWAR 551 +++ R + I ++ + ++E E A+++R W + Sbjct: 525 FEEVMKRRRPPRQPIDPEDFMDDDILADIDVLLEQAPEACAEVIRHWLK 573 >gi|317129209|ref|YP_004095491.1| flagellar M-ring protein FliF [Bacillus cellulosilyticus DSM 2522] gi|315474157|gb|ADU30760.1| flagellar M-ring protein FliF [Bacillus cellulosilyticus DSM 2522] Length = 532 Score = 251 bits (640), Expect = 3e-64, Method: Composition-based stats. Identities = 92/449 (20%), Positives = 185/449 (41%), Gaps = 31/449 (6%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ ++F++ T R ++ +IL+ + FM +F + +Y LY L V + I Sbjct: 10 NKSIEFWQGRTKRQRGLLVTTILLILLVFLAFM---WFGSRTNYVPLYSNLTVQETGEIK 66 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L + +S +G+SI VP + V + ++ LAA+GLP+S Y F + FG T Sbjct: 67 NTLDARGVPSEVSSDGTSILVPEAQVNELKVSLAAEGLPNSGR-IDYSTFSENMGFGTTD 125 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAINP- 182 + AL+ I I++I G+ A+V I +P+ + TASV++ + Sbjct: 126 NTFNLLERAALQTSIEDLIRNIDGVRNAQVMITLPEESVWLSDDREAATASVLLNLDHGY 185 Query: 183 -SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK------SLSIVQ 235 A+ HLV+ ++PNL + ++ ++D + L ++ + I + Sbjct: 186 SLDQNQVRALYHLVSRSIPNLPVENIVMMDQMSRYLELDDQTTTVDSSLTIYEQQRQIQR 245 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS------IR 289 I+ +++ + + L +G D V +L+ + +E + P ++ + S R Sbjct: 246 DIERDLQRQVQQMLGTMVGTDKVLVTVSTDLDFTQENRQEQLVTPVNEEDMSGIAVSIER 305 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 +++ E + A T E ++P + + +K EE+ N ++N Sbjct: 306 ITETYTGQELADGGVAGTGETDIPGY---PGVGNGGVGDYEKMEERINNDVNRIQREIVE 362 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGK-----IDSYLAEINKIVSAA---TGINSR 401 YK+ ++I V++ L + Q + + L +I + A Sbjct: 363 SPYKIRDIAIQVMLEPQVLEDATPEQLQQEQERVNAVQQMLGQIVRTSIDAEYTAQWEEE 422 Query: 402 RGDT-ITITSMDFLENQLFNSGTVQVSFM 429 D+ I ++S F + F Sbjct: 423 DIDSRIFVSSQQFFGKPDIPEPPSNIPFW 451 >gi|45657269|ref|YP_001355.1| flagellar MS-ring protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600507|gb|AAS69992.1| FliF [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 566 Score = 250 bits (639), Expect = 4e-64, Method: Composition-based stats. Identities = 115/590 (19%), Positives = 219/590 (37%), Gaps = 67/590 (11%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 IL+ + +FF T+L T+ LIL V L ++ + L+ L D Sbjct: 7 KILNNIREFF---TTLDTTKKLILGGVALTVLIAIGILSTISLQKNRMVLFKDLTSKDFA 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 ++ L + S + S I+V + LA + L + G+ELF V+ F Sbjct: 64 EVTKKLDSLGYQYG-SSDTSVITVDPEQRQEIVTKLAQENLIPAGVQ-GWELF-NVDKFT 120 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 T F ++I + RAL+G I +++ ++ + A V+I P+ F + ASV++ I Sbjct: 121 ETQFDKDIKKYRALKGAIEQSLMTLRSVDKAYVNIAFPEDELFSSNSSPVKASVILHYIP 180 Query: 182 P---SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI- 237 K + I +LV+ AVP L +V+V D+ GK+++ E + L IVQ Sbjct: 181 GVESLSRKEVKGIVNLVSRAVPKLKPENVSVADADGKIISDFEEDLEKERLELRIVQEKL 240 Query: 238 ----QHEIEMNI--NKALAAFLGVDNFRSAVVAE--LNMDTQQIREIVYDPDSKVE---- 285 + I+ I L LG ++ E LN D + ++ P + Sbjct: 241 RIGEEQRIQRLIDMRNTLRWLLGGEDRVDITRFEYNLNWDKESYKDNSVSPVVAIPDNPN 300 Query: 286 ---------------RSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD 330 S + +K+ + P+ E P+++ Sbjct: 301 TPYSELKLVDGYSLKVSSKETKEDFKGRGFTPDGPAGTE---PNIAPGYKDTDYQKAEYS 357 Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA-----DQGKIDSYL 385 K E +NYE N + +K+E+++++VV++ + + L Sbjct: 358 KAENINNYEFNRRVSEVQKQPWKVEKVNLSVVIDGVWEKKEKEDGTGYDRKYVPVSEDEL 417 Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445 +I K + +A GI+ RGD I++ ++ + F S ++ + + + ++ Sbjct: 418 RQIRKNLESAVGIDKARGDQISVITIPKDRSAQFASEDEELRKQKAIRQMIIASLIIIL- 476 Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505 L+V+ L A+++ + E + V ++LD Sbjct: 477 ---LLIVSILVYRAIKKEIARRRRLREEELAAQQQMMREAALRVMDESGAEVELSLDEKY 533 Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + ++ E A++LR W E Sbjct: 534 RRELLENAI------------------NLAREKPEEVAQLLRTWLSEEEA 565 >gi|257140593|ref|ZP_05588855.1| flagellar MS-ring protein [Burkholderia thailandensis E264] Length = 377 Score = 250 bits (639), Expect = 4e-64, Method: Composition-based stats. Identities = 82/378 (21%), Positives = 137/378 (36%), Gaps = 18/378 (4%) Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246 AI LV+++VP++ +VT++D G LLT + L VQ I+ + I+ Sbjct: 6 QVLAITRLVSSSVPDMPAKNVTIVDQDGNLLTQTASATGLDASQLKYVQQIERNTQKRID 65 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---TSQPE 303 LA G N RS V A+++ + Y P+ ++S S+ S S Sbjct: 66 AILAPIFGAGNARSQVSADVDFSKIEQTSESYAPNGTPQQSAIRSQQTSTSTELAQSGTS 125 Query: 304 SAVTVEQNMPH--------VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 N P S+ + P + +D+K+ +NYE++ ++ Sbjct: 126 GVPGALSNTPPQPASAPIVASNGQPAAPAATPVSDRKDSTTNYELDKTVRHVEQSMGTIK 185 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 RLS+AVVVN T+ GR Q LA++ ++V A G + +RGD++ + + F Sbjct: 186 RLSVAVVVNYQPSTDAKGRVTMQPLTADKLAQVQQLVKDAMGYDEKRGDSVNVVNSAFSA 245 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + D++ V L ALRR V Sbjct: 246 AADPFANLPWWRQPDMIELGKDIAKWLGVAAAAAALYFMFVRPALRRAFPPPAEPAAAVP 305 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 P + GL D L + +S N Y R + Sbjct: 306 ALDG----PDDALALDGLPSPDKKQLAE-EDEEHPALLAFESEKNRYERNLDYAR--TIA 358 Query: 536 EINEERFAKILRKWARSE 553 + + A +++ W E Sbjct: 359 RQDPKIVATVVKNWVSDE 376 >gi|261407984|ref|YP_003244225.1| flagellar MS-ring protein [Paenibacillus sp. Y412MC10] gi|329929286|ref|ZP_08283039.1| flagellar M-ring protein FliF [Paenibacillus sp. HGF5] gi|261284447|gb|ACX66418.1| flagellar M-ring protein FliF [Paenibacillus sp. Y412MC10] gi|328936655|gb|EGG33098.1| flagellar M-ring protein FliF [Paenibacillus sp. HGF5] Length = 526 Score = 250 bits (638), Expect = 5e-64, Method: Composition-based stats. Identities = 104/563 (18%), Positives = 219/563 (38%), Gaps = 58/563 (10%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 +++ Q++ ++ + +I+++A+V V I L + F + Y+ + L SD I Sbjct: 9 RERMTQYWNQFSN--KQKIMLIATVAFVLIALVVLTMQF-SKTKYEVAFRDLNSSDAAGI 65 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L I +++S++G SI VPS+ K +I + +QGL + + ++ G+T Sbjct: 66 ISHLETQGISYKLSEDGRSILVPSTSAAKVQIDVGSQGLVQNGTIGFETFEKNASAIGMT 125 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK--IGARPTASVMIRAIN 181 E+ V AL GE+ R ++ + G+ A V + +P F K + +ASV+++ Sbjct: 126 DNEFEVKYVNALNGEVERLLEKMQGVQDATVLLNLPKESVFAKNGNEDQASASVVVQFKP 185 Query: 182 PSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI----LGKSLSIVQ 235 + +LV A+PNL + ++T+ + +LL + + + ++ ++ + Sbjct: 186 GYRPNQEVIDGYYNLVKTAIPNLPIENITITNDEVELLATAKGGQGGLIGKVEENFALQK 245 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-DSKVERSIRLSKDA 294 ++++ N+ + L+ ++G + V ++LN D Q +E + P D + + I LS Sbjct: 246 KFENDVRQNVQQFLSQYMGSNKVNVLVASKLNFDQVQSKENIVTPVDEEEMKGIELSVQE 305 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKE--EQSNYEINTKSIATTHDNY 352 + S S + + P T+ +E + NYE+N + Y Sbjct: 306 IQKNYSGTGSPTGGVAGVGEEAVPGYPSDSGSGETNSEELSKTVNYEVNRITKDIIASPY 365 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG--INSRRGDTITITS 410 ++ L+I V V + L + + + + +S + ++ +++ S Sbjct: 366 TVKDLTINVSVEPPAGQQTLDDATRTAIQNILVNIVRASLSDSDSTYTDADLSKKVSVIS 425 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 F N N +V S+ I + F +RR + Sbjct: 426 QVFNVNADENPKSV-------FSQPVLWGIGIAALALIAGGTYFF----IRRRRQQQEEL 474 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 + ++ + P I+ T Q + Sbjct: 475 EEDIQLPPVTEFPSINLESITNE-------------------------------SQVRKQ 503 Query: 531 LLHMIEINEERFAKILRKWARSE 553 L + + + F +LR W E Sbjct: 504 LETLAKKKPDEFVNLLRTWLAEE 526 >gi|307699904|ref|ZP_07636955.1| flagellar M-ring protein FliF [Mobiluncus mulieris FB024-16] gi|307614942|gb|EFN94160.1| flagellar M-ring protein FliF [Mobiluncus mulieris FB024-16] Length = 536 Score = 249 bits (635), Expect = 1e-63, Method: Composition-based stats. Identities = 118/554 (21%), Positives = 218/554 (39%), Gaps = 36/554 (6%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 LD++ K T +T ++I +V+++ + +V P Y L+ L D + Sbjct: 9 LDRVKDTVKEFTLAQKTLVIIGVAVLVLG---GVVLYSWVGRPSYTVLFSGLTEKDQAAV 65 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + L I ++++DNG + VPS+ + +AR+ LAA LP + +GY + D + + Sbjct: 66 TQQLDATGIKYQVADNG-IVKVPSNDIQRARMDLAANNLP-AEPTTGYAVLDNL-GVAAS 122 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR--PTASVMIRAIN 181 F Q++ + RALEGE+A+TI S+ I + V + +P F TASV + Sbjct: 123 DFQQQMAKKRALEGELAKTINSMDVIEKSSVALAIPAETVFADPKKPVATTASVTVEPKK 182 Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQH 239 + +AI ++V+A++PNL G V+V+D+ G L+ + + Sbjct: 183 GREVDNNTVQAIVNMVSASIPNLAKGGVSVVDTAGNTLSDKVSAGSAAAT------ETEK 236 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY-DPDSKVERSIRLSKDAQRSE 298 + + +GV N + + EL +T+Q VY DP+ V++ S Sbjct: 237 SLVAKALAMVEPLVGVGNAKVSAHVELAQETEQKTTRVYTDPEGGVKQLSSSKASENYSG 296 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 + + V N+ + + + EN + +N +N + TT + Sbjct: 297 SGAVVAGVLGPDNIGNPYELRNGNGGKYENN---QTVNNNAVNEELTNTTRSPGAAMSKT 353 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 I+VV+N+ + + ++ V+AATGIN+ RGD I ++ F + Sbjct: 354 ISVVLNQETARRLD------------MTQVRDSVAAATGINAARGDVINVSRAPFDDTAQ 401 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 R T + + V L+ L + A++ E Sbjct: 402 KAREKAAEEAAAAAERAKTTTL--IRQAVIAGLIILLLIIIAAVAKKRAKAREREALDLG 459 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR--LLHMIE 536 L P +T I + + ++ + K R + + Sbjct: 460 ELDQLPDPYTLTPPEEEALAIEAAEVPEPEPEPEEEPEPELDPIMLKLEAKREEIAELAL 519 Query: 537 INEERFAKILRKWA 550 + A+ LR W Sbjct: 520 DKPQLVAEQLRAWM 533 >gi|328911724|gb|AEB63320.1| flagellar basal-body M-ring protein [Bacillus amyloliquefaciens LL3] Length = 510 Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 72/362 (19%), Positives = 143/362 (39%), Gaps = 17/362 (4%) Query: 43 VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL 102 +S LY L + +I L + ++D G+ I VP S V ++ LAA+GL Sbjct: 19 TSSEKMVPLYKDLSAEEAGQIKEELDTKKVSSELADGGTVIMVPESQVDSLKVQLAAEGL 78 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162 P + S Y F K FGLT ++ +V A + E++ I + GI +++V I MP Sbjct: 79 PKTGS-IDYSFFGKNAGFGLTDNEFDVLKVDATQTELSNLINEMDGIKSSKVMINMPKEA 137 Query: 163 SFR-KIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + +AS++++ + HLV+ +VPNL ++ ++D Sbjct: 138 VFVGEDQPEASASIVLQIKPGYSLDQSQINGLYHLVSKSVPNLKEDNIVIMDQNSTYYDK 197 Query: 220 NEME----RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 ++ + I ++ +I+ ++ L +G D +V A+++ ++ E Sbjct: 198 SDSGAGSVSDSYASQQGIKSQVEKDIQKHVQSLLGTMMGQDKVVVSVTADIDFTKEKRTE 257 Query: 276 IVYDPD-----SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD 330 + +P + S + + + + N + + + + Sbjct: 258 DIVEPVDKDNMEGIAISAEKVAETYKGDGAANGGTAGTGSND-TANYAAANGGSNSGDYE 316 Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINK 390 K + NYE+N YK+ L I V+V ++ + + + +I Sbjct: 317 KSSNKINYEVNRIHKEIAESPYKVRDLGIQVMVEP---PNPKNAASLTAQRQADIQKILG 373 Query: 391 IV 392 V Sbjct: 374 TV 375 >gi|50954404|ref|YP_061692.1| flagellar M-ring protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950886|gb|AAT88587.1| flagellar M-ring protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 441 Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 105/418 (25%), Positives = 184/418 (44%), Gaps = 26/418 (6%) Query: 6 QLLQFFKSGTSLGR----TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 +L +K +S + + +LV + +++ P LY L +D Sbjct: 4 RLTTAWKKISSAAAGFSFAQKTVSILAVLVLALGVTGLSLWMSQPQRVPLYTGLSAADAE 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I+ L N+ ++++D GSSI VP V R+ AA GLP+++ N GY L D S Sbjct: 64 AITQQLKTDNVSYQLTDGGSSILVPQESVYTERLKSAAAGLPTAA-NKGYSLLD-NMSIT 121 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 + F Q +T RA+EGE+A TI+++ G+ ++ V + +P+ F A PTASV I + Sbjct: 122 TSEFQQSVTYQRAMEGELANTIEAMDGVKSSSVKLAIPEKTVFTDQAADPTASVFIATAS 181 Query: 182 P--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQH 239 +AI HL +AA+ + DV+V+DS+G +L+A ++ + +Q Sbjct: 182 GHTLTRGQVQAIVHLTSAAIVGMKPADVSVIDSSGAVLSAIGGSASVSDGTAD---TLQA 238 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD-PDSKVERSIRLSKDAQRSE 298 ++ + L LG N A L+ T Y P S K+ Sbjct: 239 SVQSAVQGMLDKVLGSGNSTVTANASLSQATGTKTTQTYTVPTGAPVTSSSEEKETYTGS 298 Query: 299 TSQPESAVTVEQ---NMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 + + + + K + N +N+ + + L+ Sbjct: 299 GPAAAGVLGQPSLDVATNGTRNTTRAVGGNGSYQSAKLVKDN-ALNSVTETQSIPAGLLQ 357 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 RL+++VVVNK + E G + A+++++VSAA G+ + RGDT+++ + F Sbjct: 358 RLTVSVVVNK-TVAEAAGLAT---------AQLSQMVSAAAGVETTRGDTVSVEFVGF 405 >gi|299534787|ref|ZP_07048117.1| flagellar MS-ring protein [Lysinibacillus fusiformis ZC1] gi|298729875|gb|EFI70420.1| flagellar MS-ring protein [Lysinibacillus fusiformis ZC1] Length = 531 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 94/573 (16%), Positives = 216/573 (37%), Gaps = 69/573 (12%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 I + QF+ S + + + +++ ++ I L FF + Y LY L ++ Sbjct: 7 KIKNDTSQFWTSRS---KKQKIVMIGSVVGVIALAAIVTFFASKTTYVPLYKDLSTREIG 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 ++ AL + ++I+ G+SI VP V + LA++G P + S Y F + FG Sbjct: 64 QVKEALDSQGVTYQIAPGGTSILVPEEQVDSLLVQLASEGYPQTGS-IDYS-FANSSGFG 121 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI-GARPTASVMIRAI 180 +T + + A E EIA+ +++ G+ A+V I +P+ G F TAS+++ Sbjct: 122 MTDNEFNLLKKAATETEIAKLFKNLEGVKDAKVMITVPEEGVFVTDVQGEATASIVLNTD 181 Query: 181 NPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-----TANEMERNILGKSLSI 233 + + +LV+ ++PNL ++ + + + TA+ L + Sbjct: 182 PGYKFTEQQITTMYNLVSKSIPNLKTENIVISNQFSEYFDLNAATADGTSTTTAEGQLQM 241 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP------DSKVERS 287 + ++ +++ + L +G D +V +++ + E + P + + Sbjct: 242 KKLVERDLQRQVQNMLGTLMGQDKVMVSVTTDIDFKKENREENLVTPVDEENMEGIAISA 301 Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 R+++ + + E + + + + ++ EE N ++N Sbjct: 302 QRITEQYSGTGAAAAAGTPEAETTTDNFTTYNEGAAGNG-DYERTEETINNDVNRIRKDI 360 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLG-RSADQGKIDSYLAEINKIVSA---ATGINSRRG 403 YK++ + I V+V T+ Q I+ L+ I + + A + + Sbjct: 361 QEAPYKIQDIGIQVIVEPPTATDAASLPDGVQEDIEKILSTIVRTTISKDVAAELTQEQI 420 Query: 404 DT---ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460 D +++ + ++ + + ++ ++ VI + F + + Sbjct: 421 DEKVAVSVQPLYGKATEVADEKPIIPWWVWVIGGILLAVILL---------LAFFIIRSR 471 Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520 +R ++ E + + +D N++I + Sbjct: 472 KRAKEEEELSILEEQEELM---------------------VDDINEEIETE--------- 501 Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + +L M + + FAK+LR W + Sbjct: 502 ---ATMRRKQLEKMAKEKPDDFAKLLRSWIAED 531 >gi|227876739|ref|ZP_03994848.1| flagellar M-ring protein FliF [Mobiluncus mulieris ATCC 35243] gi|306817686|ref|ZP_07451428.1| flagellar M-ring protein FliF [Mobiluncus mulieris ATCC 35239] gi|227842636|gb|EEJ52836.1| flagellar M-ring protein FliF [Mobiluncus mulieris ATCC 35243] gi|304649500|gb|EFM46783.1| flagellar M-ring protein FliF [Mobiluncus mulieris ATCC 35239] Length = 536 Score = 247 bits (631), Expect = 3e-63, Method: Composition-based stats. Identities = 118/554 (21%), Positives = 216/554 (38%), Gaps = 36/554 (6%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 LD++ K T +T ++I +V+++ + +V P Y L+ L D + Sbjct: 9 LDRVKDTVKEFTLAQKTLVIIGVAVLVLG---GVVLYSWVGRPSYTVLFSGLTEKDQAAV 65 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + L I ++++DNG + VPS+ + +AR+ LAA LP + +GY + D + + Sbjct: 66 TQQLDATGIKYQVADNG-IVKVPSNDIQRARMDLAANNLP-AEPTTGYAVLDNL-GVAAS 122 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR--PTASVMIRAIN 181 F Q++ + RALEGE+A+TI S+ I + V + +P F TASV + Sbjct: 123 DFQQQMAKKRALEGELAKTINSMDVIEKSSVALAIPAETVFADPKKPVATTASVTVEPKK 182 Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQH 239 + +AI ++V+A++PNL G V+V+D+ G L+ + + Sbjct: 183 GREVDNNTVQAIVNMVSASIPNLAKGGVSVVDTAGNTLSDKVSAGSAAAT------ETEK 236 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY-DPDSKVERSIRLSKDAQRSE 298 + + +GV N + + EL +T+Q VY DP+ V++ S Sbjct: 237 SLVAKALAMVEPLVGVGNAKVSAHVELAQETEQKTTRVYTDPEGGVKQLSSSKASENYSG 296 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 V N+ + + + EN + +N +N + TT + Sbjct: 297 GGAVVGGVLGPDNIGNPYELRNGNGGKYENN---QTVNNNAVNEELTNTTRSPGAAMSKT 353 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 I+VV+N+ + + ++ V+AATGIN+ RGD I ++ F + Sbjct: 354 ISVVLNQETARRLD------------MTQVRDSVAAATGINAARGDVINVSRAPFDDTAQ 401 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 R T + + V L+ L + A++ E Sbjct: 402 KAREKAAEEAAAAAERAKTTTL--IRQAVIAGLIILLLIIIAAVAKKRAKAREREALDLG 459 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR--LLHMIE 536 L P +T I + + ++ + K R + + Sbjct: 460 ELDQLPDPYTLTPPEEEALAIEAAEVPEPEPEPEEEPEPELDPIMLKLEAKREEIAELAL 519 Query: 537 INEERFAKILRKWA 550 + A+ LR W Sbjct: 520 DKPQLVAEQLRAWM 533 >gi|169827120|ref|YP_001697278.1| flagellar MS-ring protein [Lysinibacillus sphaericus C3-41] gi|168991608|gb|ACA39148.1| Flagellar M-ring protein [Lysinibacillus sphaericus C3-41] Length = 531 Score = 246 bits (628), Expect = 7e-63, Method: Composition-based stats. Identities = 93/573 (16%), Positives = 215/573 (37%), Gaps = 69/573 (12%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 I + QF+KS + + + +++ ++ I L FF + Y LY L ++ Sbjct: 7 KIKNDTSQFWKSRS---KKQKIVMIGSLVGVIALAAIVTFFASKTTYVPLYKDLSTREIG 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 ++ AL + ++I+ G+SI VP V + LA++G P + + Y F + FG Sbjct: 64 QVKEALDSQGVTYQIAPGGTSILVPEEQVDSLLVQLASEGYPQTGT-IDYS-FANSSGFG 121 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI-GARPTASVMIRAI 180 +T + + A E EIA+ +++ G+ A+V I +P+ G F TAS+++ Sbjct: 122 MTDNEFNLLKKAATETEIAKLFRNLEGVKDAKVMITVPEEGVFVTDVKEDATASIVLNTD 181 Query: 181 NPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-----TANEMERNILGKSLSI 233 + + +LV+ ++PNL ++ + + + T + L + Sbjct: 182 PGYKFTEQQITTMYNLVSKSIPNLKTENIVISNQFSEYFDLNAATTDGASTTTAEGQLQM 241 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP------DSKVERS 287 + ++ +++ + L +G D +V +++ + E + P + + Sbjct: 242 KKLVERDLQRQVQNMLGTLMGQDKVMVSVTTDIDFKKENREENLVTPVDEENMEGIAISA 301 Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 R+++ + E + + + + ++ EE N ++N Sbjct: 302 QRITEQYSGTGAGAATGTPEAETTTDNFTTYNEGTSGNG-DYERTEETINNDVNRIRKDI 360 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLG-RSADQGKIDSYLAEINKIVSA---ATGINSRRG 403 YK++ + I V+V T+ + I+ L+ I + + A + + Sbjct: 361 QEAPYKVQDIGIQVIVEPPTATDAASLPDGVREDIEKILSTIVRTTISKDVAAELTQEQI 420 Query: 404 DT---ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460 D +++ + Q+ + + ++ ++ VI + F + + Sbjct: 421 DEKVAVSVQPLYGKATQVADEKPIIPWWVWVIGGILLAVILL---------LAFFIIRSR 471 Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520 +R + L +++ +D N++I + Sbjct: 472 KR---------------------AQEEEELSILEEQEDLMIDDINEEIETE--------- 501 Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + +L M + + FAK+LR W + Sbjct: 502 ---ATMRRKQLEKMAKDKPDDFAKLLRSWIAED 531 >gi|315657517|ref|ZP_07910399.1| flagellar M-ring protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315491989|gb|EFU81598.1| flagellar M-ring protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 538 Score = 246 bits (628), Expect = 8e-63, Method: Composition-based stats. Identities = 116/545 (21%), Positives = 215/545 (39%), Gaps = 33/545 (6%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 SLG+ + I+ +L+ + + + +V SP Y LY L D ++ L I Sbjct: 17 GQFSLGQKTLSIIGVAVLILGGVVLYS--WVASPDYTTLYSGLTDKDQAAVTEQLDSQGI 74 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 ++++DNG + VP+ V AR+ LAA LP+ SGY + D + + F Q++ + Sbjct: 75 KYQVADNG-VVKVPAKDVQSARMSLAAADLPAQ-PTSGYAVLDNL-GVAASDFQQQMAKK 131 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR--PTASVMIRAINPSVY--KSA 188 RALEGE+A+TI ++ I + V + +P F TASV I N + Sbjct: 132 RALEGELAKTIDTMDDIDKSSVALAIPQETVFADPKKPVATTASVTITPKNRKDVSNDTV 191 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKA 248 +AI ++VAA+VPNLD VTV+D+ G L+ ++ + Sbjct: 192 QAIINMVAASVPNLDKTGVTVVDTLGNSLSDKVEGGTAAAS------EMEKSLVDKALAV 245 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVY-DPDSKVERSIRLSKDAQRSETSQPESAVT 307 + +G N R + +L+ D Q +Y DP+ V+ + Q S V Sbjct: 246 VEPLVGAGNARVSAQVDLSQDNQVKTTRIYTDPEGGVKPLSASNAAEQYSGGGAVVGGVL 305 Query: 308 VEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367 N+ + + + NT + N +N + +T R S++VV+N+ Sbjct: 306 GPDNIGNPYELNGNNGGNYTNTQNVQ---NNAVNEEVTQSTRAPGAALRKSVSVVLNQET 362 Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVS 427 + +A++ +V+AATGI++ GD + I+ F + + Sbjct: 363 ARRLD------------MAQVRDMVAAATGIDAATGDVVNISRSPFDDTAKKAAEKAAAD 410 Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISS 487 + + + G +++ + + A+ + ++ G+ P P + Sbjct: 411 EAAAEAAAKTASLIRQAVIAGLIILLLIIIAAVAKKRAKAREREALDLGELDQLPDPYTL 470 Query: 488 AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR--LLHMIEINEERFAKI 545 + A + + + + K R + + + A+ Sbjct: 471 SAPEEEALEIEAATIPEPEPEPEPEPEPEPEPDPILLKIEAKREEIAELALDKPQLVAEQ 530 Query: 546 LRKWA 550 LR W Sbjct: 531 LRAWM 535 >gi|269976266|ref|ZP_06183262.1| flagellar M-ring protein FliF [Mobiluncus mulieris 28-1] gi|269935595|gb|EEZ92133.1| flagellar M-ring protein FliF [Mobiluncus mulieris 28-1] Length = 536 Score = 246 bits (628), Expect = 8e-63, Method: Composition-based stats. Identities = 114/555 (20%), Positives = 221/555 (39%), Gaps = 34/555 (6%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 LD++ K T +T ++I +V+++ + +V P Y L+ L D Sbjct: 7 NTLDRVKDTVKEFTLAQKTLVIIGVAVLVLG---GVVLYSWVGRPSYTVLFSGLTEKDQA 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 ++ L I ++++DNG + VPS+ + +AR+ LAA LP + +GY + D + Sbjct: 64 AVTQQLDATGIKYQVADNG-IVKVPSNDIQRARMDLAANNLP-AEPTTGYAVLDNL-GVA 120 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR--PTASVMIRA 179 + F Q++ + RALEGE+A+TI S+ I + V + +P F TASV + Sbjct: 121 ASDFQQQMAKKRALEGELAKTINSMDVIEKSSVALAIPAETVFADPKKPVATTASVTVEP 180 Query: 180 INPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI 237 + +AI ++V+A++PNL G V+V+D+ G L+ + Sbjct: 181 KKGREVDNNTVQAIVNMVSASIPNLAKGGVSVVDTAGNTLSDKVSAGSAAAT------ET 234 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY-DPDSKVERSIRLSKDAQR 296 + + + +GV N + + EL +T+Q VY DP+ V++ Sbjct: 235 EKSLVAKALAMVEPLVGVGNAKVSAHVELAQETEQKTTRVYTDPEGGVKQLSSSKASENY 294 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 S V N+ + + + EN + +N +N + TT Sbjct: 295 SGGGAVVGGVLGPDNIGNPYELRNGNGGKYENN---QTVNNNAVNEELTNTTRSPGAAMS 351 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 +I+VV+N+ + + ++ V+AATGIN+ RGD I ++ F + Sbjct: 352 KTISVVLNQETARRLD------------MTQVRDSVAAATGINAARGDVINVSRAPFDDT 399 Query: 417 -QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 Q + + T+I V +L+ + ++ + + ++G Sbjct: 400 AQKAREKAAEEAAAAAERAKTTTLIRQAVIAGLIILLLIIIAAVAKKRAKAREREALDLG 459 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 L P + + ++ + + I + + + + + Sbjct: 460 ELDQLPDPYTLTPPEEEALAIESAEVPEPEPEPEEEPEPELDPIMLKLEAKREE-IAELA 518 Query: 536 EINEERFAKILRKWA 550 + A+ LR W Sbjct: 519 LDKPQLVAEQLRAWM 533 >gi|298345990|ref|YP_003718677.1| flagellar M-ring protein FliF [Mobiluncus curtisii ATCC 43063] gi|304390252|ref|ZP_07372206.1| flagellar M-ring protein FliF [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298236051|gb|ADI67183.1| flagellar M-ring protein FliF [Mobiluncus curtisii ATCC 43063] gi|304326734|gb|EFL93978.1| flagellar M-ring protein FliF [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 538 Score = 245 bits (626), Expect = 1e-62, Method: Composition-based stats. Identities = 117/545 (21%), Positives = 215/545 (39%), Gaps = 33/545 (6%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 SLG+ + I+ +L+ + + + +V SP Y LY L D ++ L I Sbjct: 17 GQFSLGQKTLSIIGVAVLILGGVVLYS--WVASPDYTTLYSGLTDKDQAAVTEQLDSQGI 74 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 ++++DNG + VP+ V AR+ LAA LP+ SGY + D + + F Q++ + Sbjct: 75 KYQVADNG-VVKVPAKDVQSARMSLAAADLPAQ-PTSGYAVLDNL-GVAASDFQQQMAKK 131 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR--PTASVMIRAINPSVY--KSA 188 RALEGE+A+TI ++ I + V + +P F TASV I N + Sbjct: 132 RALEGELAKTIDTMDDIDKSSVALAIPQETVFADPKKPVATTASVTITPKNRKDVSNDTV 191 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKA 248 +AI ++VAA+VPNLD VTV+D+ G L+ ++ + Sbjct: 192 QAIINMVAASVPNLDKTGVTVVDTLGNSLSDKVEGGAAAAS------EMEKSLVDKALAV 245 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVY-DPDSKVERSIRLSKDAQRSETSQPESAVT 307 + +G N R + +L+ D Q VY DP+ V+ + Q S V Sbjct: 246 VEPLVGAGNARVSAQVDLSQDNQVKTTRVYTDPEGGVKPLSASNAAEQYSGGGAVVGGVL 305 Query: 308 VEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367 N+ + + + NT + N +N + +T R S++VV+N+ Sbjct: 306 GPDNIGNPYELNGNNGGNYTNTQNVQ---NNAVNEEVTQSTRAPGAALRKSVSVVLNQET 362 Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVS 427 + +A++ +V+AATGI++ GD + I+ F + + Sbjct: 363 ARRLD------------MAQVRDMVAAATGIDAATGDVVNISRSPFDDTAKKAAEKAAAD 410 Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISS 487 + + + G +++ + + A+ + ++ G+ P P + Sbjct: 411 EAAAEAAAKTASLIRQAVIAGLIILLLIIIAAVAKKRAKAREREALDLGELDQLPDPYTL 470 Query: 488 AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR--LLHMIEINEERFAKI 545 + A + + + + K R + + + A+ Sbjct: 471 SAPEEEALEIEAATIPEPEPEPEPEPEPEPEPDPILLKIEAKREEIAELALDKPQLVAEQ 530 Query: 546 LRKWA 550 LR W Sbjct: 531 LRAWM 535 >gi|296125414|ref|YP_003632666.1| flagellar M-ring protein FliF [Brachyspira murdochii DSM 12563] gi|296017230|gb|ADG70467.1| flagellar M-ring protein FliF [Brachyspira murdochii DSM 12563] Length = 567 Score = 245 bits (626), Expect = 1e-62, Method: Composition-based stats. Identities = 116/593 (19%), Positives = 224/593 (37%), Gaps = 75/593 (12%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVK-LEVSDV 60 + Q+ F T+L + +L V++V + +A + L+ + L D Sbjct: 7 KLTSQIRNIFSKTTTLQK---AVLIGVLVVGLGAIIATIMLTSRKTGTLLFQQALTQEDA 63 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 + L NI ++ NG + +A + L +G + + G+ELFD Sbjct: 64 RNVIAVLDANNIRYQYR-NGFITLNNQNDKARAELELVKEGRMPTGVD-GWELFDA-PRI 120 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 G+T +I + R+L I + + + + A V + P I + TASV+I+A Sbjct: 121 GITDVELDINKRRSLTKAITQLLTKLDFVQEATVDLAFPKKEYLTDIDSPVTASVVIKAQ 180 Query: 181 N-----PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-----ILGKS 230 K+ ++ L+A V L VT+ DSTG +LT E + + Sbjct: 181 PFKEDVLRDPKTVRGLQQLIAMGVDKLKPEFVTITDSTGYVLTDFTDEAANLKLKVAQEE 240 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---------- 280 L IV + IE I + L + + + EL D I + P Sbjct: 241 LKIVDRERKNIENKIRQTLGRIY-TNRVETTIALELIWDDVSITNNLVLPIILKEDDPTT 299 Query: 281 -------DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKE 333 +KV+ S R + + + P+ A E+N+P K ++ TD ++ Sbjct: 300 PYDDSQFTNKVQVSSRTVTEDWKGQQFIPQGAAGAEENVPPGYKDKSDRWQTYTKTDSQD 359 Query: 334 EQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ-------------GK 380 NYE++ + A +Y++ ++S AV ++ GR T+V + D Sbjct: 360 ---NYELSKRYEAIKKGSYQIGKISAAVALD-GRWTKVYDVNGDPVITNGNSYVREYHPV 415 Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440 + + +V AA G + +RGD +++T + F FN+ ++ + R + Sbjct: 416 TTEEIRNVTSLVQAAIGYDLKRGDQVSVTHIQFDHWDRFNAEDAKL----MRDRFIKKTL 471 Query: 441 NALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIA 500 + + L V L + A+++ + + M A Sbjct: 472 IITMISLLILFVLALVIRAIQK--------------ELARRRRLREEELERKQMEMRRQA 517 Query: 501 LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + ++N++ S + K+ ++ + + A++LR W + Sbjct: 518 MMNANEEPISEMS-----LEDAARKKLMDEVIRVSHERPDDVAQLLRTWMADD 565 >gi|213861543|ref|ZP_03386013.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 264 Score = 245 bits (625), Expect = 2e-62, Method: Composition-based stats. Identities = 67/201 (33%), Positives = 109/201 (54%), Gaps = 5/201 (2%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 43 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 102 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 103 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 160 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + A+ HLV++AV L G+VT++D +G LLT Sbjct: 161 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 220 Query: 219 -ANEMERNILGKSLSIVQAIQ 238 +N R++ L ++ Sbjct: 221 QSNTSGRDLNDAQLKFANDVE 241 >gi|330946121|gb|EGH47363.1| flagellar MS-ring protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 236 Score = 245 bits (625), Expect = 2e-62, Method: Composition-based stats. Identities = 74/236 (31%), Positives = 118/236 (50%), Gaps = 4/236 (1%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92 + + A + P Y LY L D +I L+ ANI++ + N ++ V S V + Sbjct: 1 MAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTLTAANINYTVEPNSGALLVKSDDVQR 60 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 ARI LA G+ S +N G+E+ DK G + FM+ R LEGE+ARTI +++ + A Sbjct: 61 ARIQLAQAGVVQSDANIGFEILDKDQGLGTSQFMEATRYRRGLEGELARTISALNNVKGA 120 Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVL 210 RVH+ +P F + +P+ASV++ + AI +LVA +VP L +TV+ Sbjct: 121 RVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEPSQVLAIINLVATSVPELSKSQITVV 180 Query: 211 DSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVA 264 D G LL+ A E + GK + ++ + + L LG D +++ V A Sbjct: 181 DQKGTLLSDQAENSELTMAGKQFDYSRRMEGMLTQRVQNILQPILGNDRYKAEVSA 236 >gi|23099010|ref|NP_692476.1| flagellar MS-ring protein [Oceanobacillus iheyensis HTE831] gi|22777238|dbj|BAC13511.1| flagellar basal-body M-ring protein [Oceanobacillus iheyensis HTE831] Length = 532 Score = 245 bits (625), Expect = 2e-62, Method: Composition-based stats. Identities = 110/568 (19%), Positives = 222/568 (39%), Gaps = 64/568 (11%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 D + F+ S + + + ++ +I++ I + F + +Y LY L + +I+ Sbjct: 10 DSVSSFWASRSKVQKGSVIGGFLLIILLIGVI---TFASTNTNYVPLYNNLSTQEAGQIT 66 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L + F + + S+I+VP V + LA+ GLP++ S Y F + S+G+T Sbjct: 67 TELESRGVPFELENGRSTITVPEEQVDTLLLDLASMGLPNNGS-IDYSFFSENTSWGITD 125 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI-GARPTASVMIRAINPS 183 + ++ A++ E+A I+S+ GI A+V I +P+ F +AS+++ Sbjct: 126 NEFNVMKLDAMQTELANLIKSVEGIQDAQVMINVPEEPVFATDVTGEASASIVLNTQPGY 185 Query: 184 VYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME---RNILGKSLSIVQAIQ 238 ++ E + HLVA AVPNL ++ +++ + N + ++ ++ + ++ Sbjct: 186 QFEGNQIEGLHHLVAKAVPNLPEENIVIMNQYFEYFDQNTQQTANQDTYTHQQTVKKEVE 245 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-DSKVERSIRLSKDAQRS 297 +I+ + + L +G +N +V A+++ + +E + +P D + + +S + + Sbjct: 246 RDIQRRLQQMLGTMVGNENIVVSVTADIDFTQENRKEELVEPVDIENMEGLPVSLETIQE 305 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK----EEQSNYEINTKSIATTHDNYK 353 +A + VP S +N D + +E NYE N YK Sbjct: 306 SYVGEGAAEAGTNEEVGTGEGDVPGYNSGDNGDGEYELDKETINYEFNRIRRDIVESPYK 365 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT--GINSRRG------DT 405 L L I V VN R + Q + S IN I+++ I+ D Sbjct: 366 LRDLGIQVAVNNTRSVDNELEYLSQQEQTSVEEGINSILNSIITSSIDGEYNQDLVPDDK 425 Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465 +I +F E ++ T I +++V Sbjct: 426 TSIVFQEFTETTTPSAE-------------GTTGIPTWLYVV------------------ 454 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 G +L + + +D + + + +L + S + Sbjct: 455 ---------AGILLLIIIVLLFFLIRNRKTSDEVVDQYEEINEQTPIPDLPEKEESE-AT 504 Query: 526 QSDLRLLHMIEINEERFAKILRKWARSE 553 +L + + E FAK+LR W + Sbjct: 505 IRRKQLEKIAKEKPEDFAKLLRSWIGED 532 >gi|323490142|ref|ZP_08095362.1| flagellar MS-ring protein [Planococcus donghaensis MPA1U2] gi|323396190|gb|EGA89016.1| flagellar MS-ring protein [Planococcus donghaensis MPA1U2] Length = 546 Score = 244 bits (623), Expect = 3e-62, Method: Composition-based stats. Identities = 102/565 (18%), Positives = 212/565 (37%), Gaps = 55/565 (9%) Query: 12 KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71 +S TS + + +++ FF N ++ LY L ++ I A+ Sbjct: 14 ESWTSFSPVTKWSVIGSFFLTLIILGVFVFFSNQSNFSVLYSDLTPAEAGEIKTAIEAQA 73 Query: 72 IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131 I +S +G +ISVP + ++ LAA+G+P + N Y F + G+T ++ Sbjct: 74 IPVEVSSDGKTISVPEEHLANLKVSLAAEGIPKNG-NVNYGTFSENMGLGMTDRHFDVVE 132 Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAINPSV--YKSA 188 A++ E+A I+ I G+ A V I +P + + TAS++++ + K Sbjct: 133 RDAMQNELAYLIKQIDGVTEANVMITLPKENIWITDEEQTSTASIVVKGDSTLQLDQKQI 192 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSLSIVQAIQHEIEM 243 + HL++ +VP+L + ++D G++ + + ++ + I + I+ +I+ Sbjct: 193 NGLYHLISKSVPSLPADQIVIMDQNGQVFEVQDENQLDTNLSVYQQHREIQKGIEQDIQR 252 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIRLSKDAQRSE 298 + + L LG D +V+ ++ ++ E + +P + ++ S+ + SE Sbjct: 253 ELQQMLGLLLGQDKVVVSVMTNIDFTKEKREEQLVEPVDVENNKGLDISVERIIETYSSE 312 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 E A + V++ +++ EE+ N E+N + Y ++ ++ Sbjct: 313 GVVIEDAAGTGET--EVANYPGVDGTGNSESERTEERINSEVNRINRQIEMSPYVIDDIT 370 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG----------DTITI 408 I V V E + +I+ ++ A + D I++ Sbjct: 371 INVGV------EPPIPDNPASLSQENITDISNLLKNAVSTSLSMNEVQATEIELEDRISV 424 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 + +F +V+F+ + + VI A + LV ++V Sbjct: 425 FATEFQGRPDIVEEEPEVTFLTGIPNNLLMVIGAAIVLVMIIVV---------------- 468 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 + + AL SNQ S +S S Sbjct: 469 ------ALLLLRKKKKVDVEEEEYSFEGFEQALAKSNQVEIEEEEIDLSEFSSR-SNPKR 521 Query: 529 LRLLHMIEINEERFAKILRKWARSE 553 + + + E F K+LR W + Sbjct: 522 KTIEKLAKGRPEDFTKLLRSWMADD 546 >gi|85710179|ref|ZP_01041244.1| flagellar M-Ring protein [Erythrobacter sp. NAP1] gi|85688889|gb|EAQ28893.1| flagellar M-Ring protein [Erythrobacter sp. NAP1] Length = 547 Score = 244 bits (622), Expect = 4e-62, Method: Composition-based stats. Identities = 109/549 (19%), Positives = 199/549 (36%), Gaps = 60/549 (10%) Query: 21 RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80 + + A V L+ +++ A F + LY L + ++ AL I + I ++ Sbjct: 41 QRALAALVGLIAVVVAGALYFAIAQGPQRILYSDLSDVERAKVVQALETGGIGYAIDNST 100 Query: 81 SSISVPSSMVGKARIHLAAQ-GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEI 139 +I+V + + +AR+ +A+ GL ++ G G + ++ A E E+ Sbjct: 101 GAITVAETDLYRARMLVASDTGL---AAPEGASAMLDAIPLGSSRTLEGERLRLAREREL 157 Query: 140 ARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAA 197 TI+ I GI + RVH+ P+ +F + P+ASVM+R ++ EAI +LV+ Sbjct: 158 MLTIREIDGIESVRVHLATPERSAFVRENNPPSASVMVRLVSGRSLGRSQVEAIVNLVSG 217 Query: 198 AVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDN 257 +VP L V V+D G+LL+A E L + + + ++ + LA LG N Sbjct: 218 SVPGLTPDKVRVVDQNGRLLSAAREE---ALGGLVLQREFEAKLREQLGTLLAPLLGEGN 274 Query: 258 FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSD 317 F S V EL + YD + V RS + A R V N P Sbjct: 275 FSSQVQVELEQEESTSARESYDREG-VIRSE-SERSATRMAGGAVGGIPGVAANTPPPDA 332 Query: 318 RKVPLP---------RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368 + V P ++ + + Q NYE+ + T+ L +LS + Sbjct: 333 QLVDGPPEATAVDGEQAADRDQEVSTQRNYELGREVAVTSTRPGGLVKLS---------V 383 Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSF 428 + +A ++ ++SAA G + RGDT+ + F Q + + Sbjct: 384 AVAVSDAALAAAAPMTAEQLQSLISAAVGADEGRGDTVEVVVSAFENAQTQPLAFYEQKW 443 Query: 429 MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSA 488 + R+ +I + K + P ++ Sbjct: 444 FADVLRYATALIA----------------------VLLVLLLGVRPLVKRLREPSAAAAE 481 Query: 489 VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRK 548 + + D A D S ++ + +R + L++ Sbjct: 482 LASDEGEGDETAYDQQQIAEEPVSDAFPQKVELA---------RQLAASQPDRAVEALQR 532 Query: 549 WARSEIEDR 557 E + Sbjct: 533 MLDVSAETK 541 >gi|289678988|ref|ZP_06499878.1| flagellar MS-ring protein [Pseudomonas syringae pv. syringae FF5] Length = 395 Score = 243 bits (621), Expect = 5e-62, Method: Composition-based stats. Identities = 81/415 (19%), Positives = 158/415 (38%), Gaps = 64/415 (15%) Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHE 240 AI +LVA +VP L +TV+D G LL+ A E + GK + ++ Sbjct: 2 REPSQVLAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGM 61 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE-- 298 + + L LG D +++ V A ++ + ++PD RS + + + S Sbjct: 62 LTQRVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNEQRSSSSS 121 Query: 299 --------TSQPESAVTV----------------------EQNMPHVSDRKVPLPRSLEN 328 ++QP T + N + D P Sbjct: 122 SGGVPGALSNQPPGPATAPQTAGAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPY 181 Query: 329 TDKK--EEQSNYEINTKSIATTHDNYKLERLSIAVVVNK-GRLTEVLGRSADQGKIDSYL 385 K + N+E++ T +L RLS+AVVV+ + G + + L Sbjct: 182 PADKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVSRAPWSAADL 241 Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVIN 441 A ++V A G ++ RGD++++ ++ F + Q F DI+ + Sbjct: 242 ARFTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYSQPWFWDIVKQ------- 294 Query: 442 ALVFLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIA 500 VG + + L LR L+NI + K+ E+ G + + G + ND ++ Sbjct: 295 ----AVGVIFILILVFGVLRPVLNNITNGKRKELAGFGGDAELGGMGGL-DGELSNDRVS 349 Query: 501 LDSSNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 L + S + +++N+ + ++ + R A+++++W ++ Sbjct: 350 LGGPQSILLPSPTEGYDAQLNA---------IKSLVAEDPGRVAQVVKEWINTDE 395 >gi|239815256|ref|YP_002944166.1| flagellar M-ring protein FliF [Variovorax paradoxus S110] gi|239801833|gb|ACS18900.1| flagellar M-ring protein FliF [Variovorax paradoxus S110] Length = 502 Score = 243 bits (620), Expect = 7e-62, Method: Composition-based stats. Identities = 110/527 (20%), Positives = 195/527 (37%), Gaps = 49/527 (9%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 + F++ T R + L +L ++ AA ++V Y L+ L+ D ++ L Sbjct: 1 MNFWQGLTQRAR---IGLVGGVLAIVLAMSAAAWWVFHTEYQVLFADLKPQDAQAMTTEL 57 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 I +R+ D+G+SI V + V RI L + LP + G ELF+ + FG+T F Q Sbjct: 58 DRLKIPYRLGDSGTSILVDKATVHATRIKLMGKELPLQGT-VGLELFNNTD-FGMTEFAQ 115 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY-- 185 +I RAL+GE+ RTIQS++ + RV + +P+ G F++ ++ AS+ + Sbjct: 116 KINYQRALQGELTRTIQSLAQVREVRVLLALPEQGLFKQATSKAKASITLTLRQGQTLRA 175 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIE 242 + ++ LVAAAVP + DVT++DS G LT E L + + + + Sbjct: 176 EQVTGVQRLVAAAVPGMATQDVTIVDSHGVALTRAEGSSGELETSSARLDLKRDTEAYLS 235 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 + L G ++V LNMD + P + + ET + Sbjct: 236 RKVAAVLDRSFGAGQALASVDVMLNMDQIRTTTEDVLPAATRSGLQSTGVVVRERETLRD 295 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 A V PRS + Y + + + R+ + V Sbjct: 296 AGAAL------DARASDVGGPRSGS----AQRDVEYAVGRRVEQVVSQQGSIRRIQVVAV 345 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD---------- 412 V + + ++ K+++AA G + RGDTI + S+ Sbjct: 346 V-------------RKTLDAAQEDQLRKVIAAAAGASIERGDTIVVQSLAGSAMLAPDAA 392 Query: 413 ------FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 + L + T + L+ ++ L A RR + Sbjct: 393 AGAAAAAHAALTSEESDEAPVSSNSLDKASPTPVQWLLGGALITMLAVWLLRAGRRGVAV 452 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR 513 +A +G + P + + + +R Sbjct: 453 REASQGAASLSEAERAAALRRVRDWMREPMSSAPAGNPAAPGPTGAR 499 >gi|326204626|ref|ZP_08194482.1| flagellar M-ring protein FliF [Clostridium papyrosolvens DSM 2782] gi|325985193|gb|EGD46033.1| flagellar M-ring protein FliF [Clostridium papyrosolvens DSM 2782] Length = 524 Score = 243 bits (619), Expect = 8e-62, Method: Composition-based stats. Identities = 99/562 (17%), Positives = 209/562 (37%), Gaps = 54/562 (9%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +L LL F+K +TRI I+ +++V + + + F + P Y + +V Sbjct: 8 LLKPLLDFWKGLDKSQKTRIFIITGIVVVSVSIGL---FLITRPTYTTVINNASTEEVAA 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + L E I ++++++ S I V +A LA + S +G D +++ + Sbjct: 65 MQKILKEKGISYKLTEDKSGIIVNEKDSDEAHFELA-----TGYSKNGLTFADALSNIKI 119 Query: 123 TSFMQEITRVRAL--EGEIARTIQSISGIVAARVHIVMPDMGSFRKIG--ARPTASVMIR 178 + + + E +IAR + I A V IV P+ ASV+I Sbjct: 120 NTTESDKKHIWQQLDESDIARQLMHFQNIENADVTIVRPEKTLLIDDNNSKDAKASVVIT 179 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-NILGKSLSIVQAI 237 + K AE+I +VA++V LD +VTV+D+ G +L + + + + Sbjct: 180 PKDEISAKQAESIVKIVASSVEGLDPKNVTVVDNKGNVLNTDSGDGIEKTSTQYDMKKKY 239 Query: 238 QHEIEMNINKALAAFLG-VDNFRSAVVAELNMDTQQIREIVY-DPDSKVERSIRLSKDAQ 295 ++++E N+ + L L D + V L+ DT Y +P+ +I ++ + Sbjct: 240 KNDLEKNVKEVLVGQLDSFDTAKVVVNPVLDFDTLTQSSKEYTNPNGADSGAITSRQETK 299 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL- 354 + + + P + S ++ +K + N++ N + + +L Sbjct: 300 ENLKNGDTGGTPGVNSNPGTTPSYPAGSDSSKSYNKSDVTENFQYNETNKQSEKSLGELI 359 Query: 355 -ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 E+ S A+ + G + D + ++ + S ATG I + ++ Sbjct: 360 PEKSSAAITLLYGNRVADDSK-----LNDEMITQVKNLTSRATG--------IPVENIAV 406 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 + ++ + S D L ++ + + + + L Sbjct: 407 SKLKIQPPVVEKPSTADTLKSLISSYGLLALLALMAIAFVIIAL---------------- 450 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 P + +D+ AL SS + I++ + ++ Sbjct: 451 --------PKKSKQKLEPAFAIDDDTALTSSKFAYSDMRPDPVPEIDTEERSEVKKQIDK 502 Query: 534 MIEINEERFAKILRKWARSEIE 555 ++ + A++LR W + E Sbjct: 503 FVKQKPDAVAQLLRNWLTDDYE 524 >gi|315654577|ref|ZP_07907483.1| flagellar M-ring protein [Mobiluncus curtisii ATCC 51333] gi|315491041|gb|EFU80660.1| flagellar M-ring protein [Mobiluncus curtisii ATCC 51333] Length = 453 Score = 243 bits (619), Expect = 9e-62, Method: Composition-based stats. Identities = 104/406 (25%), Positives = 178/406 (43%), Gaps = 31/406 (7%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 SLG+ + I+ +L+ + + + +V SP Y LY L D ++ L I Sbjct: 17 GQFSLGQKTLSIIGVAVLILGGVVLYS--WVASPDYTTLYSGLTDKDQAAVTEQLDSQGI 74 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 ++++DNG + VP+ V AR+ LAA LP+ SGY + D + + F Q++ + Sbjct: 75 KYQVADNG-VVKVPAKDVQSARMSLAAADLPAQ-PTSGYAVLDNL-GVAASDFQQQMAKK 131 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR--PTASVMIRAINPSVY--KSA 188 RALEGE+A+TI ++ I + V + +P F TASV I N + Sbjct: 132 RALEGELAKTIDTMDDIDKSSVALAIPQETVFADPKKPVATTASVTITPKNRKDVSNDTV 191 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKA 248 +AI ++VAA+VPNLD VTV+D+ G L+ ++ + Sbjct: 192 QAIINMVAASVPNLDKTGVTVVDTLGNSLSDKVEGGTAAAS------EMEKSLVDKALAV 245 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVY-DPDSKVERSIRLSKDAQRSETSQPESAVT 307 + +G N R + +L+ D Q +Y DP+ V+ + Q S V Sbjct: 246 VEPLVGAGNARVSAQVDLSQDNQVKTTRIYTDPEGGVKPLSASNAAEQYSGGGAVVGGVL 305 Query: 308 VEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367 N+ + + + NT + N +N + +T R S++VV+N+ Sbjct: 306 GPDNIGNPYELNGNNGGNYTNTQNVQ---NNAVNEEVTQSTRAPGAALRKSVSVVLNQET 362 Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 + +A++ +V+AATGI++ GD + I+ F Sbjct: 363 ARRLD------------MAQVRDMVAAATGIDAATGDVVNISRSPF 396 >gi|150020374|ref|YP_001305728.1| flagellar M-ring protein FliF [Thermosipho melanesiensis BI429] gi|149792895|gb|ABR30343.1| flagellar M-ring protein FliF [Thermosipho melanesiensis BI429] Length = 489 Score = 242 bits (618), Expect = 9e-62, Method: Composition-based stats. Identities = 100/521 (19%), Positives = 198/521 (38%), Gaps = 45/521 (8%) Query: 43 VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSS-MVGKARIHLAAQG 101 +N+P Y L +D I L + I +++ G+ I +PSS V + R+ LA+ G Sbjct: 1 MNAPRYVLLITANNETDAGAIVQQLESSGIPYKVEA-GNRILIPSSYNVYEVRMKLASSG 59 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 + +SS G+E+ D+ SFG TSF +++ RAL+GE+ RTI +I+G+ ARVH+ +P Sbjct: 60 ILGASSK-GFEILDQT-SFGATSFDKQVNYQRALQGELERTIATINGVKYARVHLTLPKY 117 Query: 162 GSFRK-IGARPTASV--MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 + + A ASV ++ + + I +L+ AV L +V V+D+ G+ L+ Sbjct: 118 TYYVRGDMAETRASVQLVLEPGASLSKEQVKGIIYLLTGAVEGLKPENVKVVDNFGRALS 177 Query: 219 A---NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 + + ++ I AL A G+ LN + Sbjct: 178 DLVNFDENTYAASTKAELKMQLERYYRSKIQPALEAVFGLGKVEVITDINLNWQKTEKTI 237 Query: 276 IVY-DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEE 334 Y P RS + ++ + + V E N+P + + S +KK E Sbjct: 238 TTYSSPKGGFIRS-KETESEKSTTFPSDGGPVGTESNIPTTYYQSLESSNSTL-YEKKHE 295 Query: 335 QSNYEINTKSIATTHDN-YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE-INKIV 392 +NYE+N + ++E + + + + + + + ++ Sbjct: 296 ITNYELNQIVENIVQNTEGEIENI-------SVSVIIDSSSTVFNKVSKNEINKMVADVI 348 Query: 393 SAATGINSRRGDTITIT-SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLL 451 + N+ I+ S+ F+ Q ++ +I + L+ + Sbjct: 349 QKSIAANASPS---NISYSLAFIPFSRELEEQYQKLIQSEQTK--KDIIFKISLLLIATV 403 Query: 452 VTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSH 511 + F + + L I +K ++ + + + + + S Q + Sbjct: 404 LMFFSSYGI--LLQIRKSKARKLVLQRYKMLEEEARKLVEKEGQEEAEEILSEAQKVIEE 461 Query: 512 SRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 +N + + + E A I++ W Sbjct: 462 LKNYAQQ---------------LAVKSPEETAAIIKIWLSE 487 >gi|150388445|ref|YP_001318494.1| flagellar M-ring protein FliF [Alkaliphilus metalliredigens QYMF] gi|149948307|gb|ABR46835.1| flagellar M-ring protein FliF [Alkaliphilus metalliredigens QYMF] Length = 517 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 109/563 (19%), Positives = 220/563 (39%), Gaps = 63/563 (11%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 I +QL ++ + L + + + + L ++ +F + P Y LY L + Sbjct: 7 QIRNQLNEYIQG---LDKNKKIKIGLSALFILISLTGIIYFFSRPDYVVLYNNLNPEESG 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 + L +NI D +I V +A++ +A QGLP++ + YE NS+ Sbjct: 64 SVMETLQGSNIRADFGDTSGTILVRKQDEKRAQVVVATQGLPTARFS--YEDAFSGNSWM 121 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMIRA 179 +TS + + A + +A T++ I G+ A V++ +P+ F A ASV + Sbjct: 122 MTSEERAQRILIAQQNYLASTMEEIPGVSKAVVNLTIPERTGFMMADNNANAKASVWLDI 181 Query: 180 INPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIV 234 + + + S + I LV+ AV L+ +VT+ G++L + +++ Sbjct: 182 SSNANLESGSIKGIAILVSNAVQGLEPENVTIHGPDGRVLNQEAGSDSSLLGASDQMNLQ 241 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP--DSKVERSIRLSK 292 QA+Q ++E +I L++ G N L D+ + + P + + IR Sbjct: 242 QAVQKDLEKSITDFLSSVYGHGNVVVMAGVRLGFDSNVTELVEFAPPIEGQETGIIRSMH 301 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 + + P + + V L D+ + NYEIN + Sbjct: 302 ELTHTAIDGPGGGIPGVDPNVGDIPQNVEDDEYLSRYDEASQTINYEINELRQKIVKAHG 361 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 ++ +S+AV VNK L AD D E+ IVSAA G+++R + + + Sbjct: 362 QVHDISVAVYVNKSTL-------ADGDLSDQERRELINIVSAAAGLDTR---VVQVGVQE 411 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV--TFLGLHALRRLHNIDDAK 470 F ++ + Q++ L+ L+ L+ TL++ ++ ++ +R+ + ++ Sbjct: 412 FNDS---LADQWQLAMDGNLAAGEGGQPWWLIGLLATLILGAAYIVINKVRKNRSQEEE- 467 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 ++ D + D + S Q + Sbjct: 468 ----------------------ILVQDVMIPDELEEINLDLSG-----------SQVKQQ 494 Query: 531 LLHMIEINEERFAKILRKWARSE 553 + ++ + A++L+ W E Sbjct: 495 IEKLVNKKPDAVAQMLKNWINEE 517 >gi|251797445|ref|YP_003012176.1| flagellar MS-ring protein [Paenibacillus sp. JDR-2] gi|247545071|gb|ACT02090.1| flagellar M-ring protein FliF [Paenibacillus sp. JDR-2] Length = 527 Score = 241 bits (614), Expect = 3e-61, Method: Composition-based stats. Identities = 112/565 (19%), Positives = 223/565 (39%), Gaps = 61/565 (10%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 +L QF+ +G+ + + L + I ++ + + Y+ + L+ +D I Sbjct: 9 RQRLTQFWG---QMGKKQKIGLGASIGALLLTIVILTYIFTRTDYEVAFQNLDTTDAAAI 65 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L I +++S +G SISVPS++ + R+ + +QGL + S G+E F+ ++FG T Sbjct: 66 MTYLDGNGIPYKLSADGQSISVPSAVATRTRVDVGSQGLVQNGS-IGFEAFEGGSAFGQT 124 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARPTASVMIRAIN 181 + + AL GE+ + + + G+ +++V I +P F + + +AS+M+ Sbjct: 125 ENEFNVKYINALNGEVQQLLNRMQGVQSSKVLINLPKESVFLTPEEKEQASASIMMNFTP 184 Query: 182 PSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER------NILGKSLSI 233 + +LV AVP L + D+T+ G+L+++ + I Sbjct: 185 GYRPSQQEVDGYYNLVKTAVPKLAVQDITISSPQGELVSSEIDGNKIGAATDAAESHFMI 244 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-DSKVERSIRLSK 292 + + E++ NI + L+ LG DN +V + N D + +E + P ++ I +S+ Sbjct: 245 QRKYEAEVKKNIQQFLSPMLG-DNLVISVASSFNFDKKVTQENLVRPLENNNNNGIIVSE 303 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ----SNYEINTKSIATT 348 S T+ + + + VP + +NT+ EQ +NY+ + + Sbjct: 304 QQDNSTTTNGSANAG---GVAGTGETDVPGYTATDNTNGSSEQSSRVTNYDYDRINNQIE 360 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 Y+L+ LSI++ V + +LT+ + A++ ++ +TI Sbjct: 361 SAPYQLKDLSISIGVEQSKLTDQSRQELTNFLSSLVRAQLADSGQD-VNDDAMIAKKVTI 419 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 +F ++GT + AL+ + +LV RR ++ Sbjct: 420 LGQNFAAT---DAGTSSSGLSMQWAIGLGAAALALIGGLTVMLV-------RRRRKQAEE 469 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 A E P + + ND+ Q+ Sbjct: 470 AAAAEAAAMMETQAKPEFPTIDFETVNNDS---------------------------QAR 502 Query: 529 LRLLHMIEINEERFAKILRKWARSE 553 L + + E F +LR W E Sbjct: 503 KNLETLAKRKPEEFVNLLRTWLVDE 527 >gi|327441055|dbj|BAK17420.1| flagellar biosynthesis/type III secretory pathway lipoprotein [Solibacillus silvestris StLB046] Length = 531 Score = 240 bits (613), Expect = 4e-61, Method: Composition-based stats. Identities = 99/561 (17%), Positives = 196/561 (34%), Gaps = 61/561 (10%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 F++S T + + L + I + A +F L+ ++ ++V RI+ L+ Sbjct: 15 FWQSRT---KNQKGALIGAFVAVIAIAAAITYFSTRTTMAQLFPEMSQAEVGRITEVLAS 71 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 + + +++ G+ I VP + V ++ LAAQG P S F FG+T + Sbjct: 72 QGVKYEVTNGGTVILVPENQVQDLQVSLAAQGYPDSG-EIDTSFFTSNAGFGMTDNEFNV 130 Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA-RPTASVMIRAINPS--VYK 186 + +E ++A ++ G+ A V I +P+ G F K A++++ Sbjct: 131 IKQATIETDLANLVRKFEGVKDASVMITLPEEGVFLKDAKGEAQAAIVLDTAPGHKFSDD 190 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSLSIVQAIQHEI 241 + + +LV+ ++PNL ++T+++ + E G + + + I+ ++ Sbjct: 191 QIKGLFNLVSMSIPNLPKENITIMNQYSEYYDLASAENGDGGIDSVTGQMEVKKTIERDL 250 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD-----SKVERSIRLSKDAQR 296 + + + L +G D V A+++ + E + P +E S + + Sbjct: 251 QRQVQQMLGTLIGPDKVVVNVSADIDFKKENREENLVRPVDEENMEGIEISAQRITETYS 310 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 + T ++ V + ++ EE N ++N YK+ Sbjct: 311 GGAAGAAEGTTEAGSVTDNFVDYVEGTNGDGDYERVEETINNDVNRIRREIQESPYKIRN 370 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI--NKIVSAATG--INSRRGDTITITSMD 412 L I V+V+ E + I+ L+ I I A G + + I ++ Sbjct: 371 LGIQVMVDPPNTEEGFDQGVRTD-IEQILSTIVRTSIDQEAAGNLTDEDIANRIVVSVQQ 429 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F N V + + + +V +L+ L A RR Sbjct: 430 FQGNDTAEDQPQSVIPWWVW-------VIGGILVVAIILLVINFLRARRR---------- 472 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 D L Q S + +L Sbjct: 473 ----------------------KQDEEELGILEQQQQLIEIEDISEEKETEATVRRKQLE 510 Query: 533 HMIEINEERFAKILRKWARSE 553 M + E FAK+LR W + Sbjct: 511 KMAKDKPEDFAKLLRSWIAED 531 >gi|150390487|ref|YP_001320536.1| flagellar M-ring protein FliF [Alkaliphilus metalliredigens QYMF] gi|149950349|gb|ABR48877.1| flagellar M-ring protein FliF [Alkaliphilus metalliredigens QYMF] Length = 517 Score = 240 bits (612), Expect = 5e-61, Method: Composition-based stats. Identities = 109/563 (19%), Positives = 220/563 (39%), Gaps = 63/563 (11%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 I +QL ++ + L + + + + L ++ +F + P Y LY L + Sbjct: 7 QIRNQLNEYVQG---LDKNKKIKIGLSALFILISLTGIIYFFSRPDYVVLYNNLNPEESG 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 + L +NI D +I V +A++ +A QGLP++ + YE NS+ Sbjct: 64 SVMETLQGSNIRADFGDTSGTILVRKQDEKRAQVVVATQGLPTARFS--YEDAFSGNSWM 121 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMIRA 179 +TS + + A + +A T++ I G+ A V++ +P+ F A ASV + Sbjct: 122 MTSEERAQRILIAQQNYLASTMEEIPGVSKAVVNLTIPERTGFMMADNNANAKASVWLDI 181 Query: 180 INPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIV 234 + + + S + I LV+ AV L+ +VT+ G++L + +++ Sbjct: 182 SSNANLESGSIKGIAILVSNAVQGLEPENVTIHGPDGRVLNQEAGSDSSLLGASDQMNLQ 241 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP--DSKVERSIRLSK 292 QA+Q ++E +I L++ G N L D+ + + P + + IR Sbjct: 242 QAVQKDLEKSITDFLSSVYGHGNVVVMAGVRLGFDSNVTELVEFAPPIEGQETGIIRSMH 301 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 + + P + + V L D+ + NYEIN + Sbjct: 302 ELTHTAIDGPGGGIPGVDPNVGDIPQNVEDDEYLSRYDEASQTINYEINELRQKIVRAHG 361 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 ++ +S+AV VNK L AD D E+ IVSAA G+++R + + + Sbjct: 362 QVHDISVAVYVNKSTL-------ADGDLSDQERRELINIVSAAAGLDTR---VVQVGVQE 411 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV--TFLGLHALRRLHNIDDAK 470 F ++ + Q++ L+ L+ L+ TL++ ++ ++ +R+ + ++ Sbjct: 412 FNDS---LADQWQLAMDGNLAAGEGGQPWWLIGLLATLILGAAYIVINKVRKNRSQEEE- 467 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 ++ D + D + S Q + Sbjct: 468 ----------------------ILVQDVMIPDELEEINLDLSG-----------SQVKQQ 494 Query: 531 LLHMIEINEERFAKILRKWARSE 553 + ++ + A++L+ W E Sbjct: 495 IEKLVNKKPDAVAQMLKNWINEE 517 >gi|218508689|ref|ZP_03506567.1| flagellar MS-ring protein [Rhizobium etli Brasil 5] Length = 332 Score = 239 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 146/360 (40%), Positives = 209/360 (58%), Gaps = 37/360 (10%) Query: 205 GDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVV 263 DVT+LDS G+LL + +E + L +SL+IVQ +Q E+E NI+KALA FLG+DNFRS+V Sbjct: 1 DDVTILDSAGQLLASGDEASNSSLNRSLNIVQNVQQEVESNIDKALAPFLGMDNFRSSVT 60 Query: 264 AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSD--RKVP 321 A+LN D QQI+E YDP+SKVERS+R +K+AQ+S+ Q ++A TVEQN+P + Sbjct: 61 ADLNTDAQQIQETTYDPESKVERSVRSTKEAQQSQQKQSDNATTVEQNIPQAAPDAGGAS 120 Query: 322 LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI 381 P S + +DK+EEQ +Y+IN+++ ATT ++YK+E+LSIAVVVN Sbjct: 121 GPESQDKSDKREEQIHYDINSRTTATTRNSYKVEKLSIAVVVN----------------- 163 Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441 ++A GI+++RGD +T+T+MDFLENQL T V MD+LSR+ A +IN Sbjct: 164 -----------TSAAGIDAKRGDVVTVTAMDFLENQLLEDATGGVRVMDMLSRNLAGIIN 212 Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDA------KKGEVGGKSILSPPPISSAVTTGLMP 495 +L F+ +V ++GL L R + + A E G + P A LM Sbjct: 213 SLAFVAVAFVVVWMGLRPLVRSVSGNGASAVLGDATPEAAGLELPDFAPAVGAPGGALMD 272 Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + + N V + + +L M+EINEER AKILRKWA + Sbjct: 273 GFGSDFGFDSTEDLLSLGDDDGNFNRRVKEGPERKLARMVEINEERAAKILRKWAIDDAA 332 >gi|326411311|gb|ADZ68375.1| flagellar MS-ring protein [Brucella melitensis M28] Length = 239 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 114/234 (48%), Positives = 151/234 (64%), Gaps = 3/234 (1%) Query: 4 LDQLLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 QL++ K LG +++ L V + + ++ P Y+ LYV L DVNR Sbjct: 7 FQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVNR 66 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S GL Sbjct: 67 MGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGL 125 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 TSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 126 TSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGG 185 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQ 235 +SA++IR LVAAAVP+LD VTVLD+ G LL +A E + S+ Q Sbjct: 186 FSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQ 239 >gi|17988495|ref|NP_541128.1| flagellar M-ring protein FLIF [Brucella melitensis bv. 1 str. 16M] gi|265998972|ref|ZP_05464502.2| flagellar M-ring protein FliF [Brucella melitensis bv. 2 str. 63/9] gi|17984286|gb|AAL53392.1| flagellar m-ring protein flif [Brucella melitensis bv. 1 str. 16M] gi|263091454|gb|EEZ15990.1| flagellar M-ring protein FliF [Brucella melitensis bv. 2 str. 63/9] gi|326554600|gb|ADZ89239.1| flagellar MS-ring protein [Brucella melitensis M5-90] Length = 242 Score = 237 bits (604), Expect = 4e-60, Method: Composition-based stats. Identities = 114/234 (48%), Positives = 151/234 (64%), Gaps = 3/234 (1%) Query: 4 LDQLLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 QL++ K LG +++ L V + + ++ P Y+ LYV L DVNR Sbjct: 10 FQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVNR 69 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S GL Sbjct: 70 MGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGL 128 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 TSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 129 TSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGG 188 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQ 235 +SA++IR LVAAAVP+LD VTVLD+ G LL +A E + S+ Q Sbjct: 189 FSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQ 242 >gi|256042874|ref|ZP_05445820.1| flagellar M-ring protein FLIF [Brucella melitensis bv. 1 str. Rev.1] gi|256112169|ref|ZP_05453090.1| flagellar M-ring protein FLIF [Brucella melitensis bv. 3 str. Ether] Length = 237 Score = 237 bits (604), Expect = 5e-60, Method: Composition-based stats. Identities = 114/234 (48%), Positives = 151/234 (64%), Gaps = 3/234 (1%) Query: 4 LDQLLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 QL++ K LG +++ L V + + ++ P Y+ LYV L DVNR Sbjct: 5 FQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVNR 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S GL Sbjct: 65 MGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGL 123 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 TSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 124 TSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGG 183 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQ 235 +SA++IR LVAAAVP+LD VTVLD+ G LL +A E + S+ Q Sbjct: 184 FSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQ 237 >gi|225619610|ref|YP_002720867.1| flagellar MS-ring protein [Brachyspira hyodysenteriae WA1] gi|225214429|gb|ACN83163.1| flagellar MS-ring protein [Brachyspira hyodysenteriae WA1] Length = 542 Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 113/571 (19%), Positives = 219/571 (38%), Gaps = 72/571 (12%) Query: 24 ILASVILVPIMLFMAARFFVNSPHYDNLYVK-LEVSDVNRISVALSEANIDFRISDNGSS 82 +L ++++ + +A + L+ + L D + L NI ++ NG Sbjct: 1 MLIGILVIGLGAIIATIVLTSRRTGTLLFQQALTQEDARNVIAVLDANNIRYQYR-NGFI 59 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 + KA + L +G + + G+ELFD G+T +I + R+L I + Sbjct: 60 TLNSEADKAKAELELVKEGRMPTGVD-GWELFDA-PRIGITDVELDINKRRSLTKAITQL 117 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN-----PSVYKSAEAIRHLVAA 197 + + + A V + P I + TASV+I+A K+ ++ L+A Sbjct: 118 LTKLDFVQEATVDLAFPKKEYLTDIDSPVTASVVIKAQPFKEEVLRDPKTVRGLQQLIAM 177 Query: 198 AVPNLDMGDVTVLDSTGKLLTANEMERN-----ILGKSLSIVQAIQHEIEMNINKALAAF 252 V L VT+ DSTG +LT E + + L IV + +IE I + L Sbjct: 178 GVDKLKPEFVTITDSTGYVLTDFTDEAANLKLKVAQEELKIVDRERKKIENKIRQTLGRI 237 Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDP-----------------DSKVERSIRLSKDAQ 295 + + + EL D I + P +KV+ S R + Sbjct: 238 Y-TNRVETTIALELIWDDVSITNNLVLPIILKEDDPATPYDDSQFTNKVQVSTRTVTEDW 296 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 + + P+ A E+N+P K ++ TD ++ NYE++ + A +Y++ Sbjct: 297 KGQQFIPQGAAGAEENVPPGYKDKSDRWQTYTKTDSQD---NYELSKRYEAIKKGSYQIG 353 Query: 356 RLSIAVVVNKGRLTEVLGRSADQ-------------GKIDSYLAEINKIVSAATGINSRR 402 ++S AV ++ GR T+ ++ D + + +V AA G + +R Sbjct: 354 KISAAVALD-GRWTKSYDQNGDPIITNGTSYVREYHPVTAEEIRNVTSLVQAAIGYDLKR 412 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 GD +++T + F FN+ ++ D R L+ + +LL+ F+ A+R Sbjct: 413 GDQVSVTHIQFDHWDRFNAEDAKL-MRDRFIR------KTLIITMISLLILFVLALAIRA 465 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 + + + M A+ ++N++ S + Sbjct: 466 IQK-----------ELARRRRLREEELERKQMEMRRQAMMNANEEPISEMS-----LEDA 509 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSE 553 K+ ++ + + A++LR W + Sbjct: 510 ARKKLMDEVIRVSHERPDDVAQLLRTWMADD 540 >gi|229166587|ref|ZP_04294339.1| Flagellar M-ring protein fliF [Bacillus cereus AH621] gi|228616841|gb|EEK73914.1| Flagellar M-ring protein fliF [Bacillus cereus AH621] Length = 524 Score = 234 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 96/568 (16%), Positives = 221/568 (38%), Gaps = 68/568 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++++ F+ SL L++ + +L + A +F Y +Y L +D I Sbjct: 1 MEKIKNVFQ---SLKTWHKLVIGAALLA--IATGALLYFTLPDKYVVVYQNLNDTDKQEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + LS+ +D++++ +G SI V + R + GLP +S + L + +S G + Sbjct: 56 TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112 Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178 +++ + + LE +I R + + A V I +P+ F + A+ TA++ + Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169 Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-----RNILGKSL 231 I+ +++AAVP + +V+V+DS +++ E + K + Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGIISKGTDEAHSNSSSSYEKEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + I+ +++ +I+ L + ++ +N D + Y D V RS + Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKSNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288 Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 +++ ++ + +T +P+ + + + + NYEI+ T Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTV-ETI 347 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402 + +L + ++ V V+ L K + + + A G+ + Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRKIDMTTFKEAIGTAAGLQADPNGNFTN 397 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 G + + ++ F + ++ + S M+ F + L+ L+G LV F Sbjct: 398 G-QVNVVTVQFDQPKVEKEKEPEKSGMN--WWLFGGITAGLLALIG--LVWFF------- 445 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 L ++ E + + +S+ + +P + I + + + L ++ Sbjct: 446 LARRKKKREEEEYEEYLAEEEVAASSESIFEIPEEKIVPEPKPEPVEPSEPTLDDQVQ-- 503 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550 + + E AK+++KW Sbjct: 504 ----------EATKEHVEGTAKVIKKWL 521 >gi|324325764|gb|ADY21024.1| flagellar MS-ring protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 524 Score = 234 bits (598), Expect = 3e-59, Method: Composition-based stats. Identities = 96/568 (16%), Positives = 217/568 (38%), Gaps = 68/568 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 +++L F+ SL L++ + +L + A +F Y +Y L +D I Sbjct: 1 MEKLKNVFQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + LS+ +D++++ +G SI V + R + GLP +S + L + +S G + Sbjct: 56 TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112 Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178 +++ + + LE +I R + + A V I +P+ F + A+ TA++ + Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169 Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-----RNILGKSL 231 I+ +++AAVP + +V+V+DS +++ E + K + Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHATSSSSYEKEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + I+ +++ +I+ L + ++ +N D + Y D V RS + Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288 Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 +++ ++ + +T +P+ + + + + NYEI+ T Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTV-ETI 347 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402 + +L + ++ V V+ L K + + + A G+ + Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRRIDMTTFKEAIGTAAGLQADPNGNFTN 397 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 G + + ++ F + + + S ++ F + L+ L G L+ F Sbjct: 398 G-QVNVVTVQFDQPKEEKKKEPEESGIN--WWLFGGITGGLLVLFG--LIWFF------- 445 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 L K+ E + + +S+ + +P + I + + L ++ Sbjct: 446 LARRKRKKEEEEYEEYLAEEEVAASSESIMEIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 505 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550 + E AK+++KW Sbjct: 506 TK------------EHVEGTAKVIKKWL 521 >gi|222095370|ref|YP_002529430.1| flagellar ms-ring protein [Bacillus cereus Q1] gi|221239428|gb|ACM12138.1| flagellar M-ring protein [Bacillus cereus Q1] Length = 524 Score = 234 bits (598), Expect = 3e-59, Method: Composition-based stats. Identities = 96/568 (16%), Positives = 216/568 (38%), Gaps = 68/568 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 +++L F+ SL L++ + +L + A +F Y +Y L +D I Sbjct: 1 MEKLKNVFQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + LS+ +D++++ +G SI V + R + GLP +S + L + +S G + Sbjct: 56 TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112 Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178 +++ + + LE +I R + + A V I +P+ F + A+ TA++ + Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169 Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-----RNILGKSL 231 I+ +++AAVP + +V+V+DS +++ E + K + Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHATSSSSYEKEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + I+ +++ +I+ L + ++ +N D + Y D V RS + Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288 Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 ++ ++ + +T +P+ + + + + NYEI+ T Sbjct: 289 EETSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTV-ETI 347 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402 + +L + ++ V V+ L K + + + A G+ + Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRRIDMTTFKEAIGTAAGLQADPNGNFTN 397 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 G + + ++ F + + + S ++ F + L+ L G L+ F Sbjct: 398 G-QVNVVTVQFDQPKEEKKKEPEESGIN--WWLFGGITGGLLALFG--LIWFF------- 445 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 L K+ E + + +S+ + +P + I + + L ++ Sbjct: 446 LARRKRKKEEEEYEEYLAEEEVAASSESIMEIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 505 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550 + E AK+++KW Sbjct: 506 TK------------EHVEGTAKVIKKWL 521 >gi|163939552|ref|YP_001644436.1| flagellar MS-ring protein [Bacillus weihenstephanensis KBAB4] gi|163861749|gb|ABY42808.1| flagellar M-ring protein FliF [Bacillus weihenstephanensis KBAB4] Length = 524 Score = 234 bits (597), Expect = 3e-59, Method: Composition-based stats. Identities = 97/568 (17%), Positives = 221/568 (38%), Gaps = 68/568 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++++ F+ SL L++ + +L + A +F Y +Y L +D I Sbjct: 1 MEKIKNVFQ---SLKTWHKLVIGAALLA--IATGALLYFTLPDKYVVVYQNLNDTDKQEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + LS+ +D++++ +G SI V + R + GLP +S + L + +S G + Sbjct: 56 TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112 Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178 +++ + + LE +I R +I A V I +P+ F + A+ TA++ + Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFATI---ETANVQITLPEKETIFDEEKAKGTAAITVG 169 Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-----RNILGKSL 231 I+ +++AAVP + +V+V+DS +++ E + K + Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGIISKGADEAHSNSSSSYEKEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + I+ +++ +I+ L + ++ +N D + Y D V RS + Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKSNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288 Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 +++ ++ + +T +P+ + + + + NYEI+ T Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTV-ETI 347 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402 + +L + ++ V V+ L K + + + A G+ + Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRKIDMTTFKEAIGTAAGLQADPNGNFTN 397 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 G + + ++ F + ++ + S M+ F + L+ L+G LV F Sbjct: 398 G-QVNVVTVQFDQPKVEKEKEPEKSGMN--WWLFGGITAGLLALIG--LVWFF------- 445 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 L ++ E + + +S+ + +P + I + + + L ++ Sbjct: 446 LARRKKKREEEEYEEYLAEEEVAASSESIFEIPEEKIVPEPKPEPVEPSEPTLDDQVQ-- 503 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550 + + E AK+++KW Sbjct: 504 ----------EATKEHVEGTAKVIKKWL 521 >gi|183220151|ref|YP_001838147.1| flagellar MS-ring protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910271|ref|YP_001961826.1| flagellar MS-ring protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774947|gb|ABZ93248.1| Endoflagellar biosynthesis/type III secretory pathway protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778573|gb|ABZ96871.1| Flagellar M-ring FliF protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 566 Score = 234 bits (596), Expect = 4e-59, Method: Composition-based stats. Identities = 123/591 (20%), Positives = 230/591 (38%), Gaps = 67/591 (11%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 I+D L + F L +T+ +ILA V+ V ++ + + + L+ L+ D + Sbjct: 7 KIIDNLKELF---NKLDKTKKMILAGVLAVVVVAVIILSNVSSQRNRVVLFKDLDSKDFS 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 ++ L + S S I+V + LA + L + +G+ELFD + F Sbjct: 64 EVTKKLDALGYSYG-SSETSLITVDPEQRQEIVTKLAQENLIPAGV-TGWELFD-IEKFT 120 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--- 178 T F ++I + RAL+G I +++ ++ I A V+I +P+ F ASV++ Sbjct: 121 ETQFDKDIKKYRALKGAIEKSLNTLRPIEKADVNIAIPEGDLFESNSYPVKASVILHFRP 180 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI- 237 + K + I +LVA AVP L +V+V D GK+++ E + L IVQ Sbjct: 181 GVEGISKKEIKGIVNLVARAVPKLKPENVSVADPDGKIISDFEEDLEKERLELRIVQEKL 240 Query: 238 ----QHEIEM--NINKALAAFLGVDNFRSAVVAE--LNMDTQQIRE--------IVYDPD 281 + ++ +I L +LG ++ E N D + + E +PD Sbjct: 241 RIEEEERVKRLIDIRNTLRWYLGGEDRVDITRFEYSFNWDQESLTENEVLPVVAEEDNPD 300 Query: 282 SK-----------VERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD 330 + ++ S + +K++ + P+ E N+P Sbjct: 301 TPYNERKLVDGYSLKVSSKETKESFKGRGFTPDGPAGTEPNLPPGYKDTD---YQKAEYS 357 Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG--RLTEVLGRSADQ---GKIDSYL 385 K E +NYE N + +K+E++ ++VVV+ R G D+ + L Sbjct: 358 KDENINNYEFNKRVKDIKRQPWKIEKIGLSVVVDGVWERKEREDGLGYDRKYIPVAEPDL 417 Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445 I K + AA G RGD I++ ++ + F + + R ++ A + Sbjct: 418 KLIRKNLEAAIGYTRSRGDQISVITIPKDRTEQFRAEDEEF----QRQRAIRNMVIASLV 473 Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505 ++ L++ L A+++ + E + V ++LD Sbjct: 474 ILILLILAILVYRAIKKEIARRRRLREEELAAQQQMMREAALRVMDEGGAEVELSLDEK- 532 Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIED 556 L++ IN + + E A++LR W E + Sbjct: 533 ----LRRELLENAIN-------------LAKEKPEDVAQLLRTWLAEEEQT 566 >gi|42780839|ref|NP_978086.1| flagellar MS-ring protein [Bacillus cereus ATCC 10987] gi|42736759|gb|AAS40694.1| flagellar M-ring protein [Bacillus cereus ATCC 10987] Length = 524 Score = 232 bits (593), Expect = 8e-59, Method: Composition-based stats. Identities = 96/568 (16%), Positives = 215/568 (37%), Gaps = 68/568 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 +++L F+ SL L++ + +L + A +F Y +Y L +D I Sbjct: 1 MEKLKNVFQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + LS+ +D++++ +G SI V + R + GLP +S + L + +S G + Sbjct: 56 TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112 Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178 +++ + + LE +I R + + A V I +P+ F + A+ TA++ + Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169 Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-----RNILGKSL 231 I+ +++AAVP + +V+V+DS +++ E + K + Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHATSSSSYEKEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + I+ +++ +I+ L + ++ +N D + Y D V RS + Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288 Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 +++ ++ + +T +P+ + + + + NYEI+ Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIK 348 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402 +L + ++ V V+ L K + + + A G+ + Sbjct: 349 KHP-ELTKTNVVVWVDNDTLV----------KRRIDMTTFKEAIGTAAGLQADPNGNFTN 397 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 G + + ++ F + + + S ++ I A + +G LV FL Sbjct: 398 G-QVNVVTVQFDQPKEEKKKEPEESGINW---WLFGGIPAGLLAIGG-LVWFL------- 445 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 L K+ E + + +S+ + +P + I + + L ++ Sbjct: 446 LARRKRKKEEEEYEEYLAEDEVAASSESIMEIPEEKIVPEPKPEPEQPKEPTLDEQVQDA 505 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550 + E AK+++KW Sbjct: 506 TK------------EHVEGTAKVIKKWL 521 >gi|229160710|ref|ZP_04288702.1| Flagellar M-ring protein fliF [Bacillus cereus R309803] gi|228622725|gb|EEK79559.1| Flagellar M-ring protein fliF [Bacillus cereus R309803] Length = 524 Score = 232 bits (593), Expect = 9e-59, Method: Composition-based stats. Identities = 93/568 (16%), Positives = 210/568 (36%), Gaps = 68/568 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++++ F+ SL L++ + +L + A +F Y +Y L +D I Sbjct: 1 MEKIRNVFQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + LS+ +D++++ +G SI V + R + GLP +S + L + +S G + Sbjct: 56 TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112 Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178 +++ + + LE +I R + + A V I +P+ F + A+ TA++ + Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169 Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSL 231 I+ +++AAVP + +V+V+DS L++ AN + K + Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKPEEVSVIDSKKGLISKGADAANTNSSSSYEKEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + I+ +++ +I+ L + ++ +N D + Y D V RS + Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVTVNYDEVTRQSEKYG-DKGVLRSKQEQ 288 Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 +++ ++ + +T +P+ + + + + NYEI+ Sbjct: 289 EESSTAQEGADAKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIK 348 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402 +L + ++ V V+ L K + + + A G+ + Sbjct: 349 KHP-ELTKTNVVVWVDNDTLV----------KRRIDMTTFKEAIGTAAGLQADPNGNFTN 397 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 G + + ++ F + + + S L+ I + + L+ FL ++ Sbjct: 398 G-QVNVVTVQFDQPKAEGPKKQEES---GLNWWLIGGITGGLLALVGLVWFFLARRKKKK 453 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 + E + S I + P L+ + Sbjct: 454 EEEEYEEYLVE--DEVAASSESIMEIPEEKIEPEPKPELEKPKEPTLDE----------- 500 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550 ++ + + E AK+++KW Sbjct: 501 -------QVQDATKEHVEGTAKVIKKWL 521 >gi|217959230|ref|YP_002337778.1| flagellar MS-ring protein [Bacillus cereus AH187] gi|229138446|ref|ZP_04267035.1| Flagellar M-ring protein fliF [Bacillus cereus BDRD-ST26] gi|217064704|gb|ACJ78954.1| putative flagellar M-ring protein FliF [Bacillus cereus AH187] gi|228644983|gb|EEL01226.1| Flagellar M-ring protein fliF [Bacillus cereus BDRD-ST26] Length = 524 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 95/568 (16%), Positives = 217/568 (38%), Gaps = 68/568 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 +++L F+ SL L++++ +L + A +F Y +Y L +D I Sbjct: 1 MEKLKNVFQ---SLKTWHKLVISAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + LS+ +D++++ +G SI V + R + GLP +S + L + +S G + Sbjct: 56 TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112 Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178 +++ + + LE +I R + + A V I +P+ F + A+ TA++ + Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169 Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSL 231 I+ +++AAVP + +V+V+DS +++ E + K + Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + I+ +++ +I+ L + ++ +N D + Y D V RS + Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288 Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 +++ ++ + +T +P+ + + + + NYEI+ T Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTV-ETI 347 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402 + +L + ++ V V+ L K + + + A G+ + Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRRIDMTTFKEAIGTAAGLQADPNGNFTN 397 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 G + + ++ F + + + S ++ I A + +G L+ FL Sbjct: 398 G-QVNVVTVQFDQPKEEKPKEPEESGINW---WLFGGIPAGLLAIGGLVWFFL------- 446 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 K+ E + + +S+ + +P + I + + L ++ Sbjct: 447 -ARRKRKKEEEEYEEYLAEDEVAASSESIMEIPEEKIVPEPKPEPEQPKEPTLDEQVQDA 505 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550 + E AK+++KW Sbjct: 506 TK------------EHVEGTAKVIKKWL 521 >gi|289433991|ref|YP_003463863.1| flagellar M-ring protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170235|emb|CBH26775.1| flagellar M-ring protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 547 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 104/574 (18%), Positives = 223/574 (38%), Gaps = 68/574 (11%) Query: 15 TSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-NLYVKLEVSDVNRISVALSEANID 73 + L + + V + +F+ ++N+P + LY L + +++ L++ +D Sbjct: 9 SKLKNWHKGAIFVGLFVVVTVFL---LYLNTPKTEITLYKNLSETSQQQVTDQLAKMGVD 65 Query: 74 FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 + + +G+ I V + R A G+P + + L +S G + +++ Sbjct: 66 YTVDKSGN-ILVDEKVETLVRDKFADLGIPYTGQDGNDILL--NSSLGASEEDKKMQEKV 122 Query: 134 A----LEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVY--K 186 LE EI ++ + + +A V + +P+ S F + + +A+V ++ N + Sbjct: 123 GTKVNLEKEIVQSYGT--TVDSASVQLTLPESSSIFEEASQKGSAAVTLKTKNNQTLTSE 180 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM----ERNILGKSLSIVQAIQHEIE 242 I+ V+AAVPN+ DV ++D+ +++ + + + I AI ++ Sbjct: 181 QVLGIQRTVSAAVPNVASEDVAIIDTKNGVISEADTTKEEGSSAYKNEVDIQNAIGKNVK 240 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQ 301 +I L++ +DNFR +N D + Y D KV + + S D + T+ Sbjct: 241 TDIEGTLSSIFALDNFRVNTSVTVNFDEIKQNTERYPNDGKVRSNQKDTSTDTSKGSTNT 300 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 ES ++P+ ++ + ++K E +NYE+++ L + ++ V Sbjct: 301 TESGTAANADVPNYTEENGGDTNTY-TSEKSSETTNYELDSTIQEIKKHP-ALAKTNVVV 358 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS--------------------R 401 V++ L +AE K V + G+ + Sbjct: 359 WVDQQALNNNGV----------DMAEFTKAVGVSAGLTPNMATPEGAEEGATPTFEGTFQ 408 Query: 402 RGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461 GD +TI + FL+NQ + + L+F + + + L+ Sbjct: 409 NGD-VTIMPIQFLDNQAPVEKDTGKTPEPASKAWIWWLAGGLLFAIIAAGIIGYIIF-LK 466 Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521 R +++A + E + P A+ ++P D+ + L++R Sbjct: 467 RKEQLEEALEPEE-----VDYIPAEEAI---VVPEDHPDFNFQTDAFHLSEPELKAR--- 515 Query: 522 YVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + +L M + + R A +++KW E Sbjct: 516 --KESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 547 >gi|256112170|ref|ZP_05453091.1| flagellar MS-ring protein [Brucella melitensis bv. 3 str. Ether] gi|256261971|ref|ZP_05464503.1| flagellar M-ring protein FliF [Brucella melitensis bv. 2 str. 63/9] gi|265993596|ref|ZP_06106153.1| flagellar M-ring protein FliF [Brucella melitensis bv. 3 str. Ether] gi|262764466|gb|EEZ10498.1| flagellar M-ring protein FliF [Brucella melitensis bv. 3 str. Ether] gi|263091455|gb|EEZ15991.1| flagellar M-ring protein FliF [Brucella melitensis bv. 2 str. 63/9] gi|326411310|gb|ADZ68374.1| flagellar MS-ring protein [Brucella melitensis M28] gi|326554599|gb|ADZ89238.1| flagellar MS-ring protein [Brucella melitensis M5-90] Length = 333 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 102/324 (31%), Positives = 174/324 (53%), Gaps = 6/324 (1%) Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 ++ +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S + Sbjct: 1 MDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 60 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 + ++A VEQN+P + S E TD++EE +NYE+N+ +++T D Y ++RLSIA Sbjct: 61 RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSMTVSTVSDGYSIKRLSIA 120 Query: 361 VVVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 VV+++ RL + G + +D + +I +V+ A G+N+ RGD I +T+++FL+ Sbjct: 121 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGA 180 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA--KKGEVGGK 477 + V + D L R + NAL L L+ + GL L R N+ A + Sbjct: 181 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 240 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 + +P I A + G I ++ D S S + + + LRL MIE+ Sbjct: 241 EVATPNFIGGAESVGEGVQAVIGGPAAYADQMKTS---LSDLRQRMRMPAKLRLEQMIEM 297 Query: 538 NEERFAKILRKWARSEIEDRYTQH 561 +EER A +L++W R Sbjct: 298 DEERVAAVLKQWIHETASGREADP 321 >gi|206974945|ref|ZP_03235860.1| putative flagellar M-ring protein FliF [Bacillus cereus H3081.97] gi|206746964|gb|EDZ58356.1| putative flagellar M-ring protein FliF [Bacillus cereus H3081.97] Length = 524 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 95/568 (16%), Positives = 215/568 (37%), Gaps = 68/568 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 +++L F+ SL L++ + +L + A +F Y +Y L +D I Sbjct: 1 MEKLKNVFQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + LS+ +D++++ +G SI V + R + GLP +S + L + +S G + Sbjct: 56 TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112 Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178 +++ + + LE +I R + + A V I +P+ F + A+ TA++ + Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169 Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSL 231 I+ +++AAVP + +V+V+DS +++ E + K + Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + I+ +++ +I+ L + ++ +N D + Y D V RS + Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288 Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 ++ ++ + +T +P+ + + + + NYEI+ T Sbjct: 289 EETSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTV-ETI 347 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402 + +L + ++ V V+ L K + + + A G+ + Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRRIDMTTFKEAIGTAAGLQADPNGNFTN 397 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 G + + ++ F + + + S ++ + L+ L G L+ F Sbjct: 398 G-QVNVVTVQFDQPKEEKKKEPEESGIN--WWLIGGITGGLLALFG--LIWFF------- 445 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 L K+ E + + +S+ + +P + I + + L ++ Sbjct: 446 LARRKRKKEEEEYEEYLAEEEVAASSESIMEIPEEKIVPEPKPEPEQPKEPTLDEQVQDA 505 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550 + E AK+++KW Sbjct: 506 TK------------EHVEGTAKVIKKWL 521 >gi|17988496|ref|NP_541129.1| flagellar M-ring protein FLIF [Brucella melitensis bv. 1 str. 16M] gi|256042873|ref|ZP_05445819.1| flagellar MS-ring protein [Brucella melitensis bv. 1 str. Rev.1] gi|260564110|ref|ZP_05834595.1| flagellar M-ring protein [Brucella melitensis bv. 1 str. 16M] gi|265989308|ref|ZP_06101865.1| flagellar M-ring protein [Brucella melitensis bv. 1 str. Rev.1] gi|17984287|gb|AAL53393.1| flagellar m-ring protein flif [Brucella melitensis bv. 1 str. 16M] gi|260151753|gb|EEW86846.1| flagellar M-ring protein [Brucella melitensis bv. 1 str. 16M] gi|262999977|gb|EEZ12667.1| flagellar M-ring protein [Brucella melitensis bv. 1 str. Rev.1] Length = 333 Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 102/324 (31%), Positives = 175/324 (54%), Gaps = 6/324 (1%) Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 ++ +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S + Sbjct: 1 MDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 60 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 + ++A VEQN+P + S E TD++EE +NYE+N+ +++T D Y ++RLSIA Sbjct: 61 RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSMTVSTVSDGYSIKRLSIA 120 Query: 361 VVVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 VV+++ RL + G + +D + +I +V+ A G+N+ RGD I +T+++FL++ Sbjct: 121 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDSAGA 180 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA--KKGEVGGK 477 + V + D L R + NAL L L+ + GL L R N+ A + Sbjct: 181 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 240 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 + +P I A + G I ++ D S S + + + LRL MIE+ Sbjct: 241 EVATPNFIGGAESVGEGVQAVIGGPAAYADQMKTS---LSDLRQRMRMPAKLRLEQMIEM 297 Query: 538 NEERFAKILRKWARSEIEDRYTQH 561 +EER A +L++W R Sbjct: 298 DEERVAAVLKQWIHETASGREADP 321 >gi|229096232|ref|ZP_04227205.1| Flagellar M-ring protein fliF [Bacillus cereus Rock3-29] gi|229115187|ref|ZP_04244597.1| Flagellar M-ring protein fliF [Bacillus cereus Rock1-3] gi|228668327|gb|EEL23759.1| Flagellar M-ring protein fliF [Bacillus cereus Rock1-3] gi|228687192|gb|EEL41097.1| Flagellar M-ring protein fliF [Bacillus cereus Rock3-29] Length = 524 Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 96/568 (16%), Positives = 220/568 (38%), Gaps = 68/568 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++++ + SL L++ + +L + A +F Y +Y L +D I Sbjct: 1 MEKIKNVIQ---SLKTWHKLVIGAALLAVVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + LS+ +D++++ +G SI V + R + GLP +S + L + +S G + Sbjct: 56 TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112 Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178 +++ + + LE +I R + + A V I +P+ F + A+ TA++ + Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169 Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-----RNILGKSL 231 I+ +++AAVP + +V+V+DS +++ E + K + Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGIISKGADEAHSNSSSSYEKEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + I+ +++ +I+ L + ++ +N D + Y D V RS + Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKSNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288 Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 +++ ++ + +T ++P+ + + + + NYEI+ T Sbjct: 289 EESSTAQEGADTKQGAGITANGDVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTV-ETI 347 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI------NSRR 402 + +L + ++ V V+ L K + + + A G+ N Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRKIDMTTFKEAIGTAAGLQVDPNGNFTN 397 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 G + + ++ F + ++ + S M+ F + L+ L+G LV F Sbjct: 398 G-QVNVVTVQFDQPKVEKEKEPEKSGMN--WWLFGGITAGLLALIG--LVWFF------- 445 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 L ++ E + + +S + +P + I + + + L ++ Sbjct: 446 LARRKKKREEEEYEEYLAEEEIAASNESILEIPEEKIVPEPTPEPEGPKEPTLDDQVQ-- 503 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550 + + E AK+++KW Sbjct: 504 ----------EATKEHVEGTAKVIKKWL 521 >gi|229195959|ref|ZP_04322712.1| Flagellar M-ring protein fliF [Bacillus cereus m1293] gi|228587518|gb|EEK45583.1| Flagellar M-ring protein fliF [Bacillus cereus m1293] Length = 524 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 94/568 (16%), Positives = 216/568 (38%), Gaps = 68/568 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 +++L F+ SL L++ + +L + A +F Y +Y L +D I Sbjct: 1 MEKLKNVFQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + LS+ +D++++ +G SI V + R + GLP +S + L + +S G + Sbjct: 56 TAELSKLGVDYQLATDG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112 Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178 + + + + LE +I R + + A V I +P+ F + A+ TA++ + Sbjct: 113 EQDKRMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169 Query: 179 AINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-----RNILGKSL 231 + ++ +++AAVP + +V+V+DS +++ E + K + Sbjct: 170 VKRGQLLMADQVAGVQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + I+ +++ +I+ L + ++ +N D + Y D V RS + Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288 Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 +++ ++ + +T +P+ + + + + NYEI+ T Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTV-ETI 347 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402 + +L + ++ V V+ L K + + + A G+ + Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRRIDMTTFKEAIGTAAGLQADPNGNFTN 397 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 G + + ++ F + + + S ++ + L+ L G L+ F Sbjct: 398 G-QVNVVTVQFDQPKEEKKKEPEESGIN--WWLIGGITGGLLALFG--LIWFF------- 445 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 L K+ E + + +S+ + +P + I + + L ++ Sbjct: 446 LARRKRKKEEEEYEEYLAEEEVAASSESIMEIPEEKIVPEPKPEPEQPKEPTLDEQVQDA 505 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550 + E AK+++KW Sbjct: 506 TK------------EHVEGTAKVIKKWL 521 >gi|218460680|ref|ZP_03500771.1| flagellar MS-ring protein [Rhizobium etli Kim 5] Length = 310 Score = 231 bits (588), Expect = 3e-58, Method: Composition-based stats. Identities = 136/310 (43%), Positives = 196/310 (63%), Gaps = 8/310 (2%) Query: 254 GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP 313 G+DNFRS+V A+LN D QQI+E YDP+SKVERS+R +K+AQ+S+ Q ++A TVEQN+P Sbjct: 1 GMDNFRSSVTADLNTDAQQIQETTYDPESKVERSVRSTKEAQQSQQKQSDNATTVEQNIP 60 Query: 314 HVSDRKVPLP--RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV 371 + S + +DK+EEQ+NYEIN+K+ ATT ++Y++E+LSIAVVVNKGR+ ++ Sbjct: 61 QAAPDAGGAGGPESQDKSDKREEQTNYEINSKTTATTRNSYQVEKLSIAVVVNKGRIAKM 120 Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDI 431 +G ADQ K+D+Y+AE+ KIV++A GI+++RGD +T+T+MDFLENQL T V MD+ Sbjct: 121 VGEPADQAKVDAYIAEMQKIVASAAGIDAKRGDVVTVTAMDFLENQLLEDATGGVRVMDM 180 Query: 432 LSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG------EVGGKSILSPPPI 485 LSR+ A +IN+L F+ +V ++GL L R + + A E G + P Sbjct: 181 LSRNLAGIINSLAFVAVAFVVVWMGLRPLVRSVSGNGAGAALGDSSPESAGLELPDFAPA 240 Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545 + A LM + + + N V + + +L M+EINEER AKI Sbjct: 241 AGASGGALMDGFGSDFGFDSTEDLLSLGDDDGNFNRRVKEGPERKLARMVEINEERAAKI 300 Query: 546 LRKWARSEIE 555 LRKWA E Sbjct: 301 LRKWAIDEAA 310 >gi|323174683|gb|EFZ60303.1| flagellar M-ring protein FliF [Escherichia coli LT-68] Length = 380 Score = 231 bits (588), Expect = 3e-58, Method: Composition-based stats. Identities = 81/402 (20%), Positives = 162/402 (40%), Gaps = 43/402 (10%) Query: 174 SVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLS 232 +V + AI HLV++AV L G+VT++D G LLT N R++ L Sbjct: 2 TVNLLPGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQFNTSGRDLNDAQLK 61 Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292 ++ I+ I L+ +G N + V A+L+ +++ E Y P+ ++ S+ Sbjct: 62 YASDVEGRIQRRIEAILSPIVGKGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSR 121 Query: 293 ---DAQRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKE 333 ++++S + P N P ++ S + ++ Sbjct: 122 QLNESEQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRN 181 Query: 334 EQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVS 393 E SNYE++ T + ++RLS+AVVVN L + + + +I + Sbjct: 182 ETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTR 237 Query: 394 AATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVT 453 A G + +RGD++ + + F + + ++ F + ++ A +L+ L+ Sbjct: 238 EAMGFSEKRGDSLNVVNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAW 293 Query: 454 FLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR 513 L A+R A+ + + + + AV L ++ + +NQ Sbjct: 294 LLWRKAVRPQLTRR-AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ------- 345 Query: 514 NLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 R+ + V Q R+ M + + A ++R+W ++ E Sbjct: 346 ----RLGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 380 >gi|229058380|ref|ZP_04196764.1| Flagellar M-ring protein fliF [Bacillus cereus AH603] gi|229132559|ref|ZP_04261408.1| Flagellar M-ring protein fliF [Bacillus cereus BDRD-ST196] gi|228650905|gb|EEL06891.1| Flagellar M-ring protein fliF [Bacillus cereus BDRD-ST196] gi|228719889|gb|EEL71479.1| Flagellar M-ring protein fliF [Bacillus cereus AH603] Length = 526 Score = 231 bits (588), Expect = 3e-58, Method: Composition-based stats. Identities = 97/568 (17%), Positives = 220/568 (38%), Gaps = 66/568 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++++ F+ SL L++ + +L + A +F Y +Y L +D I Sbjct: 1 MEKIKNVFQ---SLKTWHKLVIGAALLA--IATGALLYFTLPDKYVVVYQNLNDTDKQEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + LS+ +D++++ +G SI V + R + GLP +S + L + +S G + Sbjct: 56 TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112 Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178 +++ + + LE +I R +I A V I +P+ F + A+ TA++ + Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFATI---ETANVQITLPEKETIFDEEKAKGTAAITVG 169 Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-----RNILGKSL 231 I+ +++AAVP + +V+V+DS +++ E + K + Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGIISKGADEAHSNSSSSYEKEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + I+ +++ +I+ L + ++ +N D + Y D V RS + Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKSNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288 Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 +++ ++ + +T +P+ + + + + NYEI+ T Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTV-ETI 347 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402 + +L + ++ V V+ L K + + + A G+ + Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRKIDMTTFKEAIGTAAGLQADPNGNFTN 397 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 G + + ++ F + ++ + S M+ F + L+ L+G LV F Sbjct: 398 G-QVNVVTVQFDQPKVEKEKEPEKSGMN--WWLFGGITAGLLALIG--LVWFF------- 445 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 L ++ E + + +S+ + +P + I + + ++ Sbjct: 446 LARRKKKREEEEYEEYLAEEEVAASSESIFEIPEEKIV--PEPKPEPEPVEPSEPTLDDQ 503 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550 V + + E AK+++KW Sbjct: 504 VQ--------EATKEHVEGTAKVIKKWL 523 >gi|229102345|ref|ZP_04233053.1| Flagellar M-ring protein fliF [Bacillus cereus Rock3-28] gi|228680992|gb|EEL35161.1| Flagellar M-ring protein fliF [Bacillus cereus Rock3-28] Length = 524 Score = 230 bits (587), Expect = 4e-58, Method: Composition-based stats. Identities = 95/568 (16%), Positives = 220/568 (38%), Gaps = 68/568 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++++ + SL L++ + +L + A +F Y +Y L +D I Sbjct: 1 MEKIKNVIQ---SLKTWHKLVIGAALLAVVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + LS+ +D++++ +G SI V + R + GLP +S + L + +S G + Sbjct: 56 TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112 Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178 +++ + + LE +I R + + A V I +P+ F + A+ TA++ + Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169 Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-----RNILGKSL 231 I+ +++AAVP + +V+V+DS +++ E + K + Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGIISKGADEAHSNSSSSYEKEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + I+ +++ +I+ L + ++ +N D + Y D V RS + Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKSNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288 Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 +++ ++ + +T ++P+ + + + + NYEI+ T Sbjct: 289 EESSTAQEGADTKQGAGITANGDVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTV-ETI 347 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402 + +L + ++ V V+ L K + + + A G+ + Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRRIDMTTFKEAIGTAAGLQADPNGNFTN 397 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 G + + ++ F + ++ + S M+ F + L+ L+G LV F Sbjct: 398 G-QVNVVTVQFDQPKVEKEKEPEKSGMN--WWLFGGITAGLLALIG--LVWFF------- 445 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 L ++ E + + +S + +P + I + + + L ++ Sbjct: 446 LARRKKKREEEEYEEYLAEEEIAASNESILEIPEEKIVPEPTPEPEGPKEPTLDDQVQ-- 503 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550 + + E AK+++KW Sbjct: 504 ----------EATKEHVEGTAKVIKKWL 521 >gi|228933030|ref|ZP_04095893.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826631|gb|EEM72402.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 524 Score = 230 bits (586), Expect = 5e-58, Method: Composition-based stats. Identities = 94/568 (16%), Positives = 214/568 (37%), Gaps = 68/568 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++++ + SL L++ + +L + A +F Y +Y L +D I Sbjct: 1 MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + LS+ +D++++ +GS I V + R + GLP +S + L + +S G + Sbjct: 56 TAELSKLGVDYQLAADGS-IRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112 Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178 +++ + + LE +I R + + A V I +P+ F + A+ TA++ + Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169 Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-----RNILGKSL 231 I+ +++AAVP + +V+V+DS +++ E + K + Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + Q I+ +++ +I+ L + ++ +N D + Y D V RS + Sbjct: 230 EMQQQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288 Query: 292 KDAQRSETSQ---PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 +++ ++ + +T +P+ + + + + NYEI+ Sbjct: 289 EESSTAQEGAEAKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIK 348 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402 +L + ++ V V+ L K + + + A G+ + Sbjct: 349 KHP-ELTKTNVVVWVDNDTLV----------KRKIDMTTFKEAIGTAAGLQADPNGNFTN 397 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 G + + ++ F + + + S ++ I A + +G L+ FL Sbjct: 398 G-QVNVVTVQFDQPKEEKKKEPEESGINW---WLFGGIPAGLLAIGGLVWFFL------- 446 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 K+ E + + +S + +P + I +S + L ++ Sbjct: 447 -ARRKRKKEEEEYEEYLAEEEIAASNESIMEIPEEKIVPESKPEPEEPKEPTLDEQVQDA 505 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550 + E AK+++KW Sbjct: 506 TK------------EHVEGTAKVIKKWL 521 >gi|228952126|ref|ZP_04114221.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228807658|gb|EEM54182.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 524 Score = 230 bits (586), Expect = 6e-58, Method: Composition-based stats. Identities = 92/568 (16%), Positives = 213/568 (37%), Gaps = 68/568 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++++ + SL L++ + +L + A +F Y +Y L +D I Sbjct: 1 MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + LS+ +D++++ +G SI V + R + GLP +S + L + +S G + Sbjct: 56 TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112 Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178 +++ + + LE +I R + + A V I +P+ F + A+ TA++ + Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169 Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSL 231 I+ +++AAVP + +V+V+DS +++ E + K + Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + ++ +++ +I+ L + ++ +N D + Y D V RS + Sbjct: 230 EMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288 Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 +++ ++ + +T +P+ + + + + NYEI+ T Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTV-ETI 347 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402 + +L + ++ V V+ L K + + + A G+ + Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRKIDMTTFKEAIGTAAGLQADPNGNFIN 397 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 G + + ++ F + + + S M+ I A + +G LV FL R+ Sbjct: 398 G-QVNVVTVQFDQPKAEKEKEPEKSGMNW---WLFGGITAGLLAIGG-LVWFLLARRKRK 452 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 + + + + + +P + I + + L ++ Sbjct: 453 KEEEEYEEYLVEEEIAASNESIL-------EIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 505 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550 + E AK+++KW Sbjct: 506 TK------------EHVEGTAKVIKKWL 521 >gi|228914325|ref|ZP_04077940.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228845319|gb|EEM90355.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 524 Score = 229 bits (585), Expect = 6e-58, Method: Composition-based stats. Identities = 93/568 (16%), Positives = 214/568 (37%), Gaps = 68/568 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++++ + SL L++ + +L + A +F Y +Y L +D I Sbjct: 1 MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + LS+ +D++++ +G SI V + R + GLP +S + L + +S G + Sbjct: 56 TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112 Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178 +++ + + LE +I R + + A V I +P+ F + A+ TA++ + Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169 Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-----RNILGKSL 231 I+ +++AAVP + +V+V+DS +++ E + K + Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + I+ +++ +I+ L + ++ +N D + Y D V RS + Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288 Query: 292 KDAQRSETSQ---PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 +++ ++ + +T +P+ + + + + NYEI+ T Sbjct: 289 EESSTAQEGAETKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTV-ETI 347 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402 + +L + ++ V V+ L K + + + A G+ + Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRKIDMTTFKEAIGTAAGLQADPNGNFTN 397 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 G + + ++ F + + + S ++ I A + +G L+ FL Sbjct: 398 G-QVNVVTVQFDQPKEEKKKEPEESGINW---WLFGGIPAGLLAIGGLVWFFL------- 446 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 K+ E + + +S + +P + I + + L ++ Sbjct: 447 -ARRKRKKEEEEYEEYLAEEEIAASNESIMEIPEEKIVPEPKLEPEEPKEPTLDEQVQDA 505 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550 + E AK+++KW Sbjct: 506 TK------------EHVEGTAKVIKKWL 521 >gi|49477313|ref|YP_035866.1| flagellar MS-ring protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52143713|ref|YP_083117.1| flagellar MS-ring protein [Bacillus cereus E33L] gi|196038966|ref|ZP_03106273.1| putative flagellar M-ring protein FliF [Bacillus cereus NVH0597-99] gi|218902861|ref|YP_002450695.1| putative flagellar M-ring protein FliF [Bacillus cereus AH820] gi|225863605|ref|YP_002748983.1| putative flagellar M-ring protein FliF [Bacillus cereus 03BB102] gi|228926782|ref|ZP_04089850.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228945349|ref|ZP_04107704.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229183938|ref|ZP_04311154.1| Flagellar M-ring protein fliF [Bacillus cereus BGSC 6E1] gi|254723823|ref|ZP_05185609.1| flagellar MS-ring protein [Bacillus anthracis str. A1055] gi|301053283|ref|YP_003791494.1| flagellar M-ring protein [Bacillus anthracis CI] gi|49328869|gb|AAT59515.1| flagellar M-ring protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51977182|gb|AAU18732.1| flagellar M-ring protein [Bacillus cereus E33L] gi|196030111|gb|EDX68711.1| putative flagellar M-ring protein FliF [Bacillus cereus NVH0597-99] gi|218537965|gb|ACK90363.1| putative flagellar M-ring protein FliF [Bacillus cereus AH820] gi|225787831|gb|ACO28048.1| putative flagellar M-ring protein FliF [Bacillus cereus 03BB102] gi|228599590|gb|EEK57194.1| Flagellar M-ring protein fliF [Bacillus cereus BGSC 6E1] gi|228814321|gb|EEM60587.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228832895|gb|EEM78464.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|300375452|gb|ADK04356.1| flagellar M-ring protein [Bacillus cereus biovar anthracis str. CI] Length = 524 Score = 229 bits (585), Expect = 6e-58, Method: Composition-based stats. Identities = 93/568 (16%), Positives = 214/568 (37%), Gaps = 68/568 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++++ + SL L++ + +L + A +F Y +Y L +D I Sbjct: 1 MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + LS+ +D++++ +G SI V + R + GLP +S + L + +S G + Sbjct: 56 TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112 Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178 +++ + + LE +I R + + A V I +P+ F + A+ TA++ + Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169 Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-----RNILGKSL 231 I+ +++AAVP + +V+V+DS +++ E + K + Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + I+ +++ +I+ L + ++ +N D + Y D V RS + Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288 Query: 292 KDAQRSETSQ---PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 +++ ++ + +T +P+ + + + + NYEI+ T Sbjct: 289 EESSTAQEGAETKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTV-ETI 347 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402 + +L + ++ V V+ L K + + + A G+ + Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRKIDMTTFKEAIGTAAGLQADPNGNFTN 397 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 G + + ++ F + + + S ++ I A + +G L+ FL Sbjct: 398 G-QVNVVTVQFDQPKEEKKKEPEESGINW---WLFGGIPAGLLAIGGLVWFFL------- 446 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 K+ E + + +S + +P + I + + L ++ Sbjct: 447 -ARRKRKKEEEEYEEYLAEEEIAASNESIMEIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 505 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550 + E AK+++KW Sbjct: 506 TK------------EHVEGTAKVIKKWL 521 >gi|196033494|ref|ZP_03100906.1| putative flagellar M-ring protein FliF [Bacillus cereus W] gi|195993928|gb|EDX57884.1| putative flagellar M-ring protein FliF [Bacillus cereus W] Length = 524 Score = 229 bits (585), Expect = 6e-58, Method: Composition-based stats. Identities = 93/568 (16%), Positives = 214/568 (37%), Gaps = 68/568 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++++ + SL L++ + +L + A +F Y +Y L +D I Sbjct: 1 MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + LS+ +D++++ +G SI V + R + GLP +S + L + +S G + Sbjct: 56 TAELSKLGVDYQLATDG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112 Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178 +++ + + LE +I R + + A V I +P+ F + A+ TA++ + Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169 Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-----RNILGKSL 231 I+ +++AAVP + +V+V+DS +++ E + K + Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + I+ +++ +I+ L + ++ +N D + Y D V RS + Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288 Query: 292 KDAQRSETSQ---PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 +++ ++ + +T +P+ + + + + NYEI+ T Sbjct: 289 EESSTAQEGAETKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTV-ETI 347 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402 + +L + ++ V V+ L K + + + A G+ + Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRKIDMTTFKEAIGTAAGLQADPNGNFTN 397 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 G + + ++ F + + + S ++ I A + +G L+ FL Sbjct: 398 G-QVNVVTVQFDQPKEEKKKEPEESGINW---WLFGGIPAGLLAIGGLVWFFL------- 446 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 K+ E + + +S + +P + I + + L ++ Sbjct: 447 -ARRKRKKEEEEYEEYLAEEEIAASNESIMEIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 505 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550 + E AK+++KW Sbjct: 506 TK------------EHVEGTAKVIKKWL 521 >gi|229029426|ref|ZP_04185509.1| Flagellar M-ring protein fliF [Bacillus cereus AH1271] gi|228731885|gb|EEL82784.1| Flagellar M-ring protein fliF [Bacillus cereus AH1271] Length = 524 Score = 229 bits (585), Expect = 7e-58, Method: Composition-based stats. Identities = 97/568 (17%), Positives = 217/568 (38%), Gaps = 68/568 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 +++L F+ SL L++ + +L + A +F Y +Y L +D I Sbjct: 1 MEKLKNVFQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + LS+ +D++++ +G SI V + R + GLP +S + L + +S G + Sbjct: 56 TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112 Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178 +++ + + LE +I R +I A V I +P+ F + A+ TA++ + Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAAI---ETANVQITLPEKETIFDEEKAKGTAAITVG 169 Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSL 231 ++ +++AAVP + +V+V+DS +++ E + K + Sbjct: 170 VKRGQLLTADQVAGVQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + I+ +++ +I+ L + ++ +N D + Y D V RS + Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288 Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 +++ ++ + +T +P+ + + + + NYEI+ T Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTV-ETI 347 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402 + +L + ++ V V+ L K + + + A G+ + Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRRIDMTTFKEAIGTAAGLQADPNGNFTN 397 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 G + + ++ F + + + S M+ + L+ LVG L+ F Sbjct: 398 G-QVNVVTVQFDQPKEEKKKEPEASGMN--WWLIGGITGGLLALVG--LIWFF------- 445 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 L K+ E + + +S+ + +P + I + + L ++ Sbjct: 446 LARRKRKKEEEEYEEYLAEEEVAASSESIMEIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 505 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550 + E AK+++KW Sbjct: 506 TK------------EHVEGTAKVIKKWL 521 >gi|229155317|ref|ZP_04283428.1| Flagellar M-ring protein fliF [Bacillus cereus ATCC 4342] gi|228628242|gb|EEK84958.1| Flagellar M-ring protein fliF [Bacillus cereus ATCC 4342] Length = 524 Score = 229 bits (585), Expect = 7e-58, Method: Composition-based stats. Identities = 93/568 (16%), Positives = 214/568 (37%), Gaps = 68/568 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++++ + SL L++ + +L + A +F Y +Y L +D I Sbjct: 1 MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + LS+ +D++++ +G SI V + R + GLP +S + L + +S G + Sbjct: 56 TAELSKLGVDYQLATDG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112 Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178 +++ + + LE +I R + + A V I +P+ F + A+ TA++ + Sbjct: 113 EQDKKMKQIVGTRKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169 Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-----RNILGKSL 231 I+ +++AAVP + +V+V+DS +++ E + K + Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + I+ +++ +I+ L + ++ +N D + Y D V RS + Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288 Query: 292 KDAQRSETSQ---PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 +++ ++ + +T +P+ + + + + NYEI+ T Sbjct: 289 EESSTAQEGAETKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTV-ETI 347 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402 + +L + ++ V V+ L K + + + A G+ + Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRKIDMTTFKEAIGTAAGLQADPNGNFTN 397 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 G + + ++ F + + + S ++ I A + +G L+ FL Sbjct: 398 G-QVNVVTVQFDQPKEEKKKEPEESGINW---WLFGGIPAGLLAIGGLVWFFL------- 446 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 K+ E + + +S + +P + I + + L ++ Sbjct: 447 -ARRKRKKEEEEYEEYLAEEEIAASNESIMEIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 505 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550 + E AK+++KW Sbjct: 506 TK------------EHVEGTAKVIKKWL 521 >gi|229090707|ref|ZP_04221940.1| Flagellar M-ring protein fliF [Bacillus cereus Rock3-42] gi|228692649|gb|EEL46375.1| Flagellar M-ring protein fliF [Bacillus cereus Rock3-42] Length = 524 Score = 229 bits (585), Expect = 8e-58, Method: Composition-based stats. Identities = 93/568 (16%), Positives = 213/568 (37%), Gaps = 68/568 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++++ + SL L++ + +L + A +F Y +Y L +D I Sbjct: 1 MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + LS+ +D++++ +G SI V + R + GLP +S + L + +S G + Sbjct: 56 TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112 Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178 +++ + + LE +I R + + A V I +P+ F + A+ TA++ + Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169 Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-----RNILGKSL 231 I+ +++AAVP + +V+V+DS +++ E K + Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSTSYEKEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + I+ +++ +I+ L + ++ +N D + Y D V RS + Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288 Query: 292 KDAQRSETSQ---PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 +++ ++ + +T +P+ + + + + NYEI+ T Sbjct: 289 EESSTAQEGAETKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTV-ETI 347 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402 + +L + ++ V V+ L K + + + A G+ + Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRKIDMTTFKEAIGTAAGLQADPNGNFTN 397 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 G + + ++ F + + + S ++ I A + +G L+ FL Sbjct: 398 G-QVNVVTVQFDQPKEEKKKEPEESGINW---WLFGGIPAGLLAIGGLVWFFL------- 446 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 K+ E + + +S + +P + I + + L ++ Sbjct: 447 -ARRKRKKEEEEYEEYLAEEEIAASNESIMEIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 505 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550 + E AK+++KW Sbjct: 506 TK------------EHVEGTAKVIKKWL 521 >gi|228984830|ref|ZP_04145002.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775028|gb|EEM23422.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 524 Score = 229 bits (584), Expect = 8e-58, Method: Composition-based stats. Identities = 93/568 (16%), Positives = 213/568 (37%), Gaps = 68/568 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++++ + SL L++ + +L + A +F Y +Y L +D I Sbjct: 1 MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + LS+ +D++++ +G SI V + R + GLP +S + L + +S G + Sbjct: 56 TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112 Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178 +++ + + LE +I R + + A V I +P+ F + A+ TA++ + Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169 Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-----RNILGKSL 231 I+ +++AAVP + +V+V+DS +++ E + K + Sbjct: 170 VKRGQLLTADQVTGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + I+ +++ +I+ L + ++ +N D + Y D V RS + Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288 Query: 292 KDAQRSETSQ---PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 +++ ++ + +T +P+ + + + + NYEI+ T Sbjct: 289 EESSTAQEGAETKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTV-ETI 347 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402 + +L + ++ V V+ L K + + + A G+ + Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRKIDMTTFKEAIGTAAGLQADPNGNFTN 397 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 G + + ++ F + + + S ++ I A + G L+ FL Sbjct: 398 G-QVNVVTVQFDQPKEEKKKEPEESGINW---WLFGGIPAGLLAFGGLVWFFL------- 446 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 K+ E + + +S + +P + I + + L ++ Sbjct: 447 -ARRKRKKEEEEYEEYLAEEEIAASNESIMEIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 505 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550 + E AK+++KW Sbjct: 506 TK------------EHVEGTAKVIKKWL 521 >gi|332297609|ref|YP_004439531.1| flagellar M-ring protein FliF [Treponema brennaborense DSM 12168] gi|332180712|gb|AEE16400.1| flagellar M-ring protein FliF [Treponema brennaborense DSM 12168] Length = 568 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 104/595 (17%), Positives = 211/595 (35%), Gaps = 76/595 (12%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 ++ + + + T + + +IL +I V I + F P L+ + ++DV+ Sbjct: 7 KLVSSIKELWAKWTLIQK---IILFGIIAVVIAALVFMLRFSAKPATVPLF-NVAITDVS 62 Query: 62 R---ISVALSEANIDFRISDNGSSISVPSSMVGK-ARIHLAAQGLPSSSSNSGYELFDKV 117 I LS+ N++ ++ G ISV + R L + L ++ + Sbjct: 63 ARDNILYRLSQENVEAEVNAAG-VISVKDEQTARRMRSVLVREDLVPTNVDPWA--LFDT 119 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 + +T F + + R++ + + I+++ I +A V I +P+ F TASV+I Sbjct: 120 ERWTITDFERNVNLQRSITQMVKQHIEALDDIDSANVVITLPERTLFASDQNPTTASVII 179 Query: 178 RAINPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILG 228 S K + I+ L+ AV L ++T+ DSTG+++ E +I+ Sbjct: 180 YPKPGSDIADNKKKIQGIQKLLLRAVEGLKEENITIADSTGRIVNDFEGMAASERVDIVA 239 Query: 229 KSLSIVQAIQHEIEMNINKALAAFLGVDNFRS-AVVAELNMDTQQIREIVYDP-----DS 282 K +++ ++ E ++ K+L G D R + +++M +Q+ Y P D+ Sbjct: 240 KEQKLIKQLEMEYRASVLKSLQQIFGTDRVRDLNIKIDMDMSKKQVAGTEYSPIVIKADN 299 Query: 283 KV------------ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD 330 S PE VE P V L E T Sbjct: 300 PNTPYDDSELRDYLPISSETVTKVWTGTGYNPEGPAGVEGQNPPVYSDMSNLYGKSEETG 359 Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS------------ADQ 378 K+ N INTK ++R++++V ++ + Sbjct: 360 VKQ---NNVINTKEYQEEKSP-SIDRVTVSVNIDGTWRRTYDDKGQLVLNPNGTIAREYV 415 Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFAT 438 + L+ K+V A G N RGD++T+ ++ + F + + Sbjct: 416 PVDSAVLSSAAKLVQDAIGYNRNRGDSVTVQNIQYDRTAQFEEEDMAYIRAQQQRKTIML 475 Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498 VI + ++ +V + + + Sbjct: 476 VIAGIAVVLLAFMVFRF------------------ISRELERRRRLREEEILRRNQMERE 517 Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 L + Q + +++ R + + + + M + + E A ++R W E Sbjct: 518 KTLWEAEQAGMEVTMSVEERHRAELQENAIT----MAKEHPEDVAMLIRTWLMEE 568 >gi|229172393|ref|ZP_04299952.1| Flagellar M-ring protein fliF [Bacillus cereus MM3] gi|228610864|gb|EEK68127.1| Flagellar M-ring protein fliF [Bacillus cereus MM3] Length = 524 Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 96/568 (16%), Positives = 218/568 (38%), Gaps = 68/568 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++++ + SL L++ + +L + A +F Y +Y L +D I Sbjct: 1 MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDTDKQEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + LS+ +D++++ +GS I V + R + GLP +S + L + +S G + Sbjct: 56 TAELSKLGVDYQLAADGS-IRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112 Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178 +++ + + LE +I R + + A V I +P+ F + A+ TA++ + Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169 Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-----RNILGKSL 231 I+ +++AAVP + +V+V+DS +++ E + K + Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + Q I+ +++ +I+ L + ++ +N D + Y D V RS + Sbjct: 230 EMQQQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288 Query: 292 KDAQRSETSQ---PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 +++ ++ + +T +P+ + + + + NYEI+ T Sbjct: 289 EESSTAQEGAETKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTV-ETI 347 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402 + +L + ++ V V+ L K + + + A G+ + Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRKIDMTTFKEAIGTAAGLQADPNGNFTN 397 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 G + + ++ F + + + S ++ I A + +G LV FL Sbjct: 398 G-QVNVVTVQFDQPKEEKKKEPEESGINW---WLFGGIPAGLLAIGG-LVWFL------- 445 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 L K+ E + + +S+ + +P + I + + L +++ Sbjct: 446 LARRKRKKEEEEYEEYLAEEEIAASSESIMEIPEEKIVPEPKPEPEEPKEPTLDEQVHDA 505 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550 + E AK+++KW Sbjct: 506 TK------------EHVEGTAKVIKKWL 521 >gi|118477182|ref|YP_894333.1| flagellar MS-ring protein [Bacillus thuringiensis str. Al Hakam] gi|118416407|gb|ABK84826.1| flagellar M-ring protein [Bacillus thuringiensis str. Al Hakam] Length = 524 Score = 228 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 93/568 (16%), Positives = 214/568 (37%), Gaps = 68/568 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++++ + SL L++ + +L + A +F Y +Y L +D I Sbjct: 1 MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKLEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + LS+ +D++++ +G SI V + R + GLP +S + L + +S G + Sbjct: 56 TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112 Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178 +++ + + LE +I R + + A V I +P+ F + A+ TA++ + Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169 Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-----RNILGKSL 231 I+ +++AAVP + +V+V+DS +++ E + K + Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + I+ +++ +I+ L + ++ +N D + Y D V RS + Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288 Query: 292 KDAQRSETSQ---PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 +++ ++ + +T +P+ + + + + NYEI+ T Sbjct: 289 EESSTAQEGAETKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTV-ETI 347 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402 + +L + ++ V V+ L K + + + A G+ + Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRKIDMTTFKEAIGTAAGLQADPNGNFTN 397 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 G + + ++ F + + + S ++ I A + +G L+ FL Sbjct: 398 G-QVNVVTVQFDQPKEEKKKEPEESGINW---WLFGGIPAGLLAIGGLVWFFL------- 446 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 K+ E + + +S + +P + I + + L ++ Sbjct: 447 -ARRKRKKEEEEYEEYLAEEEIAASNESIMEIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 505 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550 + E AK+++KW Sbjct: 506 TK------------EHVEGTAKVIKKWL 521 >gi|229121298|ref|ZP_04250529.1| Flagellar M-ring protein fliF [Bacillus cereus 95/8201] gi|228662143|gb|EEL17752.1| Flagellar M-ring protein fliF [Bacillus cereus 95/8201] Length = 524 Score = 228 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 95/568 (16%), Positives = 215/568 (37%), Gaps = 68/568 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++++ + SL L++ + +L + A +F Y +Y L +D I Sbjct: 1 MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + LS+ +D++++ +G SI V + R + GLP +S + L + +S G + Sbjct: 56 TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112 Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178 +++ + + LE +I R + + A V I +P+ F + A+ TA++ + Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169 Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-----RNILGKSL 231 I+ +++AAVP + +V+V+DS +++ E + K + Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + I+ +++ +I+ L + ++ +N D + Y D V RS + Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288 Query: 292 KDAQRSETSQ---PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 +++ ++ + +T +P+ + + + + NYEI+ T Sbjct: 289 EESSTAQEGAETKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTV-ETI 347 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402 + +L + ++ V V+ L K + + + A G+ + Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRKMDMTTFKEAIGTAAGLQADPNGNFTN 397 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 G + + ++ F + + + S ++ I A + +G LV FL Sbjct: 398 G-QVNVVTVQFDQPKEEKKKEPEESGINW---WLFGGIPAGLLAIGG-LVWFL------- 445 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 L K+ E + + +S + +P + I + + L ++ Sbjct: 446 LARRKRKKEEEEYEEYLAEEEIAASNESIMEIPEEKIVPEPKPEPEKPKEPTLDEQVQDA 505 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550 + E AK+++KW Sbjct: 506 TK------------EHVEGTAKVIKKWL 521 >gi|229109203|ref|ZP_04238802.1| Flagellar M-ring protein fliF [Bacillus cereus Rock1-15] gi|228674213|gb|EEL29458.1| Flagellar M-ring protein fliF [Bacillus cereus Rock1-15] Length = 524 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 96/568 (16%), Positives = 217/568 (38%), Gaps = 68/568 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++++ + SL L++ + +L + A +F Y +Y L +D I Sbjct: 1 MEKMKNVIQ---SLKMWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + LS+ +D++++ +G SI V + R + GLP +S + L + +S G + Sbjct: 56 TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112 Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178 +++ + + LE +I R + + A V I +P+ F + A+ TA++ + Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169 Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSL 231 I+ +++AAVP + +V+V+DS +++ E + K + Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + ++ +++ +I+ L + ++ +N D + Y D V RS + Sbjct: 230 EMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288 Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 +++ ++ + +T +P+ + + + + NYEI+ T Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTV-ETI 347 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402 + +L + ++ V V+ L K + + + A G+ + Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRRIDMTTFKEAIGTAAGLQADPNGNFIN 397 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 G + + ++ F + + + S M+ I A + +G LV FL Sbjct: 398 G-QVNVVTVQFDQPKAEKEKEPEKSGMNW---WLFGGITAGLLAIGG-LVWFL------- 445 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 L + K+ E G+ + +S + +P + I + + L ++ Sbjct: 446 LASRKRKKEEEEYGEYLAEDEIAASNESILEIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 505 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550 + E AK+++KW Sbjct: 506 TK------------EHVEGTAKVIKKWL 521 >gi|229043500|ref|ZP_04191210.1| Flagellar M-ring protein fliF [Bacillus cereus AH676] gi|228725878|gb|EEL77125.1| Flagellar M-ring protein fliF [Bacillus cereus AH676] Length = 524 Score = 227 bits (580), Expect = 3e-57, Method: Composition-based stats. Identities = 94/568 (16%), Positives = 213/568 (37%), Gaps = 68/568 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++++ + SL L++ + +L + A +F Y +Y L +D I Sbjct: 1 MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + LS+ +D++++ +G SI V + R + GLP +S + L + +S G + Sbjct: 56 TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112 Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178 +++ + + LE +I R + + A V I +P+ F + A+ TA++ + Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169 Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSL 231 I+ +++AAVP + +V+V+DS +++ E + K + Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + ++ +++ +I+ L + ++ +N D + Y D V RS + Sbjct: 230 EMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288 Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 +++ ++ + +T +P+ + + + + NYEI+ Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTVETIK 348 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402 +L + ++ V V+ L K + + + A G+ + Sbjct: 349 KHP-ELTKTNVVVWVDNDTLV----------KRRIDMTTFKEAIGTAAGLQADPNGNFIN 397 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 G + + ++ F +Q + D+ F + L+ + G LV FL Sbjct: 398 G-QVNVVTVQF--DQPKAEKEKEPEKSDMNWWLFGGITAGLLAIGG--LVWFL------- 445 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 L K+ E + + +S + +P + I + + L ++ Sbjct: 446 LARRKRKKEEEEYEEYLAEDEIAASNESILEIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 505 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550 + E AK+++KW Sbjct: 506 TK------------EHVEGTAKVIKKWL 521 >gi|196045123|ref|ZP_03112356.1| putative flagellar M-ring protein FliF [Bacillus cereus 03BB108] gi|196024125|gb|EDX62799.1| putative flagellar M-ring protein FliF [Bacillus cereus 03BB108] Length = 524 Score = 227 bits (580), Expect = 3e-57, Method: Composition-based stats. Identities = 96/568 (16%), Positives = 215/568 (37%), Gaps = 68/568 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++++ + SL L++ + +L + A +F Y +Y L +D I Sbjct: 1 MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + LS+ +D++++ +G SI V + R + GLP +S + L + +S G + Sbjct: 56 TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112 Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178 +++ + + LE +I R + + A V I +P+ F + A+ TA++ + Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169 Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSL 231 I+ +++AAVP + +V+V+DS +++ E + K + Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + I+ +++ +I+ L + ++ +N D + Y D V RS + Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288 Query: 292 KDAQRSETSQ---PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 +++ ++ + +T +P+ + + + + NYEI+ T Sbjct: 289 EESSTAQEGAETKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTV-ETI 347 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI------NSRR 402 + +L + ++ V V+ L K + + + A G+ N Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRKIDMTTFKEAIGTAAGLQVDPNGNFTN 397 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 G + + ++ F + + + S ++ I A + +G LV FL Sbjct: 398 G-QVNVVTVQFDQPKEEKKKEQEESGINW---WLFGGIPAGLLAIGG-LVWFL------- 445 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 L K+ E + + +S + +P + I + + L ++ Sbjct: 446 LARRKRKKEEEEYEEYLAEEEIAASNESIMEIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 505 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550 + E AK+++KW Sbjct: 506 TK------------EHVEGTAKVIKKWL 521 >gi|220929468|ref|YP_002506377.1| flagellar M-ring protein FliF [Clostridium cellulolyticum H10] gi|219999796|gb|ACL76397.1| flagellar M-ring protein FliF [Clostridium cellulolyticum H10] Length = 523 Score = 227 bits (579), Expect = 3e-57, Method: Composition-based stats. Identities = 106/562 (18%), Positives = 211/562 (37%), Gaps = 55/562 (9%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +L LL F+K +TRI I+ V++V F + P Y + +DV Sbjct: 8 LLKPLLDFWKGLDKSQKTRIFIITGVVVVS---VGIGLFLITRPTYTTVISNASSADVAA 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + L E I ++++D+ S I V +A L S+ S SG+ D +++ + Sbjct: 65 MQKILKEKGISYKLTDDKSGIIVNEKDSDEAHFEL------STGSKSGFTFADALSNLKI 118 Query: 123 TSFMQEITRVRAL--EGEIARTIQSISGIVAARVHIVMPDMGSFRKIG--ARPTASVMIR 178 + + + E +IAR ++ I A V IV P+ ASV+I Sbjct: 119 NTTESDKKHIWQQLDESDIARQLKLFQNIEDANVTIVRPEKTLLIDDSNSKDAKASVVIT 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQAI 237 + K AE+I LVA++V LD +VTV+D+ G +L + E + + + Sbjct: 179 PKDEISAKQAESIVKLVASSVEGLDPKNVTVVDNKGNILNIDSESGMDKTSTQYDMKKKY 238 Query: 238 QHEIEMNINKALAAFLG-VDNFRSAVVAELNMDTQQIREIVY-DPDSKVERSIRLSKDAQ 295 ++++E N+ + L L D + V L+ DT Y +P+ +I ++ + Sbjct: 239 KNDLERNLREVLVDQLDSFDTAKVVVNPVLDFDTLTQSSKEYTNPNGADSGAILSRQETR 298 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL- 354 + + P + ++ K + N++ N + +L Sbjct: 299 EDLKNGDTGGTPGVNSNPGTTPTYPAGSDDSKSYKKSDLTENFQYNETNKQIEKSLGELI 358 Query: 355 -ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 ER S A+ + G + D + ++ + S ATGI + I +T + Sbjct: 359 PERSSAAITLLYGNRVLDDSK-----LNDEMITQVKNLASMATGIPAE---NIAVTKLK- 409 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 ++ + + + + +++S + + AL+ + ++ Sbjct: 410 IQPPVVETPSTADTIRNLISNYGLLALLALMAIAFVIIAL-------------------- 449 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 P + L +DN A+ S I++ + ++ Sbjct: 450 --------PKKSKQKLEPALAVDDNAAITSPKFVYNEIRPEPVPEIDTEERSEVKKQIDK 501 Query: 534 MIEINEERFAKILRKWARSEIE 555 ++ + A++LR W + E Sbjct: 502 FVKQKPDAVAQLLRNWLTDDYE 523 >gi|228938860|ref|ZP_04101460.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971741|ref|ZP_04132362.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978350|ref|ZP_04138727.1| Flagellar M-ring protein fliF [Bacillus thuringiensis Bt407] gi|228781367|gb|EEM29568.1| Flagellar M-ring protein fliF [Bacillus thuringiensis Bt407] gi|228787831|gb|EEM35789.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820709|gb|EEM66734.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939360|gb|AEA15256.1| flagellar MS-ring protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 524 Score = 227 bits (578), Expect = 4e-57, Method: Composition-based stats. Identities = 95/568 (16%), Positives = 215/568 (37%), Gaps = 68/568 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++++ + SL L++ + +L + A +F Y +Y L +D I Sbjct: 1 MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDTDKQEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + LS+ +D++++ +G SI V + R + GLP +S + L + +S G + Sbjct: 56 TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112 Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178 +++ + + LE +I R + + A V I +P+ F + A+ TA++ + Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169 Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSL 231 I+ +++AAVP + +V+V+DS +++ E + K + Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGTDEAHSSSSSSYEKEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + ++ +++ +I+ L + ++ +N D + Y D V RS + Sbjct: 230 EMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288 Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 +++ ++ + +T +P+ + + + + NYEI+ T Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTV-ETI 347 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402 + +L + ++ V V+ L K + + + A G+ + Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRRMDMTTFKEAIGTAAGLQADPNGNFIN 397 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 G + + ++ F + + + S M+ I A + +G LV FL Sbjct: 398 G-QVNVVTVQFDQPKAEKEKEPEKSGMNW---WLFGGITAGLLAIGG-LVWFL------- 445 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 L K+ E + + +S + +P + I + + L ++ Sbjct: 446 LARRKRKKEEEEYEEYLAEDEIAASNESILEIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 505 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550 + E AK+++KW Sbjct: 506 TK------------EHVEGTAKVIKKWL 521 >gi|75761142|ref|ZP_00741134.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218896679|ref|YP_002445090.1| putative flagellar M-ring protein FliF [Bacillus cereus G9842] gi|228900328|ref|ZP_04064558.1| Flagellar M-ring protein fliF [Bacillus thuringiensis IBL 4222] gi|74491370|gb|EAO54594.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218541808|gb|ACK94202.1| putative flagellar M-ring protein FliF [Bacillus cereus G9842] gi|228859363|gb|EEN03793.1| Flagellar M-ring protein fliF [Bacillus thuringiensis IBL 4222] Length = 525 Score = 227 bits (578), Expect = 4e-57, Method: Composition-based stats. Identities = 91/568 (16%), Positives = 212/568 (37%), Gaps = 67/568 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++++ + SL L++ + +L + A +F Y +Y L +D I Sbjct: 1 MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDTDKQEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + LS+ +D++++ +G SI V + R + GLP +S + L + +S G + Sbjct: 56 TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112 Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178 +++ + + LE +I R + + A V I +P+ F + A+ TA++ + Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169 Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSL 231 I+ +++AAVP + +V+V+DS +++ E + K + Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + ++ +++ +I+ L + ++ +N D + Y D V RS + Sbjct: 230 EMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288 Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 +++ ++ + +T +P+ + + N + NYEI+ Sbjct: 289 EESSTAQEGTDTKQSAGITANGEVPNYGTNNNQNGKVVYNNKNGNKIENYEIDKTVETIK 348 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402 +L + ++ V V+ L K + + + A G+ + Sbjct: 349 KHP-ELTKTNVVVWVDNDTLV----------KRRMDMTTFKEAIGTAAGLQADPNGNFIN 397 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 G + + ++ F + ++ + S M+ I A + +G L+ L Sbjct: 398 G-QVNVVTVQFDQPKVEKEKEPEKSGMNW---WLFGGITAGLLAIGGLVWFLLA------ 447 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 ++ E + + +S + +P + I + + L ++ Sbjct: 448 -RRKRKKEEEEEYEEYLAEDEIAASNESILEIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 506 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550 + E AK+++KW Sbjct: 507 TK------------EHVEGTAKVIKKWL 522 >gi|296502346|ref|YP_003664046.1| flagellar MS-ring protein [Bacillus thuringiensis BMB171] gi|296323398|gb|ADH06326.1| flagellar MS-ring protein [Bacillus thuringiensis BMB171] Length = 524 Score = 227 bits (578), Expect = 5e-57, Method: Composition-based stats. Identities = 93/568 (16%), Positives = 213/568 (37%), Gaps = 68/568 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++++ + SL L++ + +L + A +F Y +Y L +D I Sbjct: 1 MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + LS+ +D++++ +G SI V + R + GLP +S + L + +S G + Sbjct: 56 TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112 Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178 +++ + + LE +I R + + A V I +P+ F + A+ TA++ + Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169 Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSL 231 I+ +++AAVP + +V+V+DS +++ E + K + Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + ++ +++ +I+ L + ++ +N D + Y D V RS + Sbjct: 230 EMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288 Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 +++ ++ + +T +P+ + + + + NYEI+ Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTVETIK 348 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402 +L + ++ V V+ L K + + + A G+ + Sbjct: 349 KHP-ELTKTNVVVWVDNDTLV----------KRRIDMTTFKEAIGTAAGLQADPNGNFIN 397 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 G + + ++ F +Q + D+ F + L+ + G +V FL Sbjct: 398 G-QVNVVTVQF--DQPKAEKEKEPEKSDMNWWLFGGITAGLLAIGG--IVWFL------- 445 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 L K+ E + + +S + +P + I + + L ++ Sbjct: 446 LARRKRKKEEEEYEEYLAEDEIAASNESILEIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 505 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550 + E AK+++KW Sbjct: 506 TK------------EHVEGTAKVIKKWL 521 >gi|300117335|ref|ZP_07055125.1| flagellar MS-ring protein [Bacillus cereus SJ1] gi|298725170|gb|EFI65822.1| flagellar MS-ring protein [Bacillus cereus SJ1] Length = 520 Score = 226 bits (577), Expect = 5e-57, Method: Composition-based stats. Identities = 94/568 (16%), Positives = 215/568 (37%), Gaps = 72/568 (12%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++++ + SL L++ + +L + A +F Y +Y L +D I Sbjct: 1 MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + LS+ +D++++ +G SI V + R + GLP +S + L + +S G + Sbjct: 56 TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112 Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178 +++ + + LE +I R + + A V I +P+ F + A+ TA++ + Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169 Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-----RNILGKSL 231 I+ +++AAVP + +V+V+DS +++ E + K + Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + I+ +++ +I+ L + ++ +N D + Y D V RS + Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288 Query: 292 KDAQRSETSQ---PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 +++ ++ + +T +P+ + + + + NYEI+ T Sbjct: 289 EESSTAQEGAETKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTV-ETI 347 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402 + +L + ++ V V+ L K + + + A G+ + Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRKIDMTTFKEAIGTAAGLQADPNGNFTN 397 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 G + + ++ F + + + S ++ I A + +G L+ FL Sbjct: 398 G-QVNVVTVQFDQPKEEKPKEPEESGINW---WLFGGIPAGLLAIGGLVWFFL------- 446 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 K+ E + + +S+ + +P + I + + +Q + Sbjct: 447 -ARRKRKKEEEEYEEYLAEEEIAASSESIMEIPEEKIVPEPEEPKEPTLDEQVQDATKEH 505 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550 V E AK+++KW Sbjct: 506 V----------------EGTAKVIKKWL 517 >gi|30019791|ref|NP_831422.1| flagellar MS-ring protein [Bacillus cereus ATCC 14579] gi|229127072|ref|ZP_04256071.1| Flagellar M-ring protein fliF [Bacillus cereus BDRD-Cer4] gi|229144358|ref|ZP_04272764.1| Flagellar M-ring protein fliF [Bacillus cereus BDRD-ST24] gi|29895336|gb|AAP08623.1| Flagellar M-ring protein fliF [Bacillus cereus ATCC 14579] gi|228639145|gb|EEK95569.1| Flagellar M-ring protein fliF [Bacillus cereus BDRD-ST24] gi|228656425|gb|EEL12264.1| Flagellar M-ring protein fliF [Bacillus cereus BDRD-Cer4] Length = 524 Score = 226 bits (577), Expect = 6e-57, Method: Composition-based stats. Identities = 94/568 (16%), Positives = 213/568 (37%), Gaps = 68/568 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++++ + SL L++ + +L + A +F Y +Y L +D I Sbjct: 1 MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + LS+ +D++++ +G SI V + R + GLP +S + L + +S G + Sbjct: 56 TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112 Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178 +++ + + LE +I R + + A V I +P+ F + A+ TA++ + Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169 Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSL 231 I+ +++AAVP + +V+V+DS +++ E + K + Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + ++ +++ +I+ L + ++ +N D + Y D V RS + Sbjct: 230 EMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288 Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 +++ ++ + +T +P+ + + + + NYEI+ Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTVETIK 348 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402 +L + ++ V V+ L K + + + A G+ + Sbjct: 349 KHP-ELTKTNVVVWVDNDTLV----------KRRIDMTTFKEAIGTAAGLQADPNGNFIN 397 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 G + + ++ F + + + S M+ I A + +G LV FL Sbjct: 398 G-QVNVVTVQFDQPKAEKEKEPEKSGMNW---WLFGGITAGLLAIGG-LVWFL------- 445 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 L K+ E + + +S + +P + I + + L ++ Sbjct: 446 LARRKRKKEEEEYEEYLAEDEIAASNESILEIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 505 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550 + E AK+++KW Sbjct: 506 TK------------EHVEGTAKVIKKWL 521 >gi|229069298|ref|ZP_04202588.1| Flagellar M-ring protein fliF [Bacillus cereus F65185] gi|228713785|gb|EEL65670.1| Flagellar M-ring protein fliF [Bacillus cereus F65185] Length = 524 Score = 226 bits (577), Expect = 6e-57, Method: Composition-based stats. Identities = 95/568 (16%), Positives = 215/568 (37%), Gaps = 68/568 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++++ + SL L++ + +L + A +F Y +Y L +D I Sbjct: 1 MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDTDKQEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + LS+ +D++++ +G SI V + R + GLP +S + L + +S G + Sbjct: 56 TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112 Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178 +++ + + LE +I R + + A V I +P+ F + A+ TA++ + Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169 Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSL 231 I+ +++AAVP + +V+V+DS +++ E + K + Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGTDEAHSSSSSSYEKEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + ++ +++ +I+ L + ++ +N D + Y D V RS + Sbjct: 230 EMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288 Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 +++ ++ + +T +P+ + + + + NYEI+ T Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTV-ETI 347 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402 + +L + ++ V V+ L K + + + A G+ + Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRKIDMTTFKEAIGTAAGLQADPNGNFIN 397 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 G + + ++ F + + + S M+ I A + +G LV FL Sbjct: 398 G-QVNVVTVQFDQPKAEKEKEPEKSGMNW---WLFGGITAGLLAIGG-LVWFL------- 445 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 L K+ E + + +S + +P + I + + L ++ Sbjct: 446 LARRKRKKEEEEYEEYLAEEEIAASNESILEIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 505 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550 + E AK+++KW Sbjct: 506 TK------------EHVEGTAKVIKKWL 521 >gi|229078928|ref|ZP_04211480.1| Flagellar M-ring protein fliF [Bacillus cereus Rock4-2] gi|228704342|gb|EEL56776.1| Flagellar M-ring protein fliF [Bacillus cereus Rock4-2] Length = 524 Score = 226 bits (577), Expect = 7e-57, Method: Composition-based stats. Identities = 95/568 (16%), Positives = 215/568 (37%), Gaps = 68/568 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++++ + SL L++ + +L + A +F Y +Y L +D I Sbjct: 1 MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + LS+ +D++++ +G SI V + R + GLP +S + L + +S G + Sbjct: 56 TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112 Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178 +++ + + LE +I R + + A V I +P+ F + A+ TA++ + Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169 Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSL 231 I+ +++AAVP + +V+V+DS +++ E + K + Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + ++ +++ +I+ L + ++ +N D + Y D V RS + Sbjct: 230 EMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288 Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 +++ ++ + +T +P+ + + + + NYEI+ T Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTV-ETI 347 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402 + +L + ++ V V+ L K + + + A G+ + Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRKIDMTTFKEAIGTAAGLQADPNGNFIN 397 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 G + + ++ F + + + S M+ I A + +G LV FL Sbjct: 398 G-QVNVVTVQFDQPKAEKEKEPEKSGMNW---WLFGGITAGLLAIGG-LVWFL------- 445 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 L K+ E + + +S + +P + I + + L ++ Sbjct: 446 LARRKRKKEEEEYEEYLAEEEIAASNESILEIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 505 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550 + E AK+++KW Sbjct: 506 TK------------EHVEGTAKVIKKWL 521 >gi|49184575|ref|YP_027827.1| flagellar MS-ring protein [Bacillus anthracis str. Sterne] gi|65319014|ref|ZP_00391973.1| COG1766: Flagellar biosynthesis/type III secretory pathway lipoprotein [Bacillus anthracis str. A2012] gi|227815496|ref|YP_002815505.1| putative flagellar M-ring protein FliF [Bacillus anthracis str. CDC 684] gi|254683235|ref|ZP_05147096.1| flagellar MS-ring protein [Bacillus anthracis str. CNEVA-9066] gi|254734587|ref|ZP_05192299.1| flagellar MS-ring protein [Bacillus anthracis str. Western North America USA6153] gi|254740996|ref|ZP_05198684.1| flagellar MS-ring protein [Bacillus anthracis str. Kruger B] gi|254755239|ref|ZP_05207273.1| flagellar MS-ring protein [Bacillus anthracis str. Vollum] gi|254759775|ref|ZP_05211799.1| flagellar MS-ring protein [Bacillus anthracis str. Australia 94] gi|49178502|gb|AAT53878.1| secretory protein of YscJ/FliF family (flagellar M-ring protein) [Bacillus anthracis str. Sterne] gi|227005826|gb|ACP15569.1| putative flagellar M-ring protein FliF [Bacillus anthracis str. CDC 684] Length = 460 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 82/473 (17%), Positives = 188/473 (39%), Gaps = 48/473 (10%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++++ + SL L++ + +L + A +F Y +Y L +D I Sbjct: 1 MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + LS+ +D++++ +G SI V + R + GLP +S + L + +S G + Sbjct: 56 TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112 Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178 +++ + + LE +I R + + A V I +P+ F + A+ TA++ + Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169 Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-----RNILGKSL 231 I+ +++AAVP + +V+V+DS +++ E + K + Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + I+ +++ +I+ L + ++ +N D + Y D V RS + Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288 Query: 292 KDAQRSETSQ---PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 +++ ++ + +T +P+ + + + + NYEI+ T Sbjct: 289 EESSTAQEGAETKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTV-ETI 347 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402 + +L + ++ V V+ L K + + + A G+ + Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRKIDMTTFKEAIGTAAGLQADPNGNFTN 397 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455 G + + ++ F + + + S ++ I A + +G L+ FL Sbjct: 398 G-QVNVVTVQFDQPKEEKKKEPEESGINW---WLFGGIPAGLLAIGGLVWFFL 446 >gi|229149948|ref|ZP_04278176.1| Flagellar M-ring protein fliF [Bacillus cereus m1550] gi|228633629|gb|EEK90230.1| Flagellar M-ring protein fliF [Bacillus cereus m1550] Length = 524 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 95/568 (16%), Positives = 215/568 (37%), Gaps = 68/568 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++++ + SL L++ + +L + A +F Y +Y L +D I Sbjct: 1 MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + LS+ +D++++ +G SI V + R + GLP +S + L + +S G + Sbjct: 56 TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112 Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178 +++ + + LE +I R + + A V I +P+ F + A+ TA++ + Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169 Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSL 231 I+ +++AAVP + +V+V+DS +++ E + K + Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGTDEAHSSSSSSYEKEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + ++ +++ +I+ L + ++ +N D + Y D V RS + Sbjct: 230 EMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288 Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 +++ ++ + +T +P+ + + + + NYEI+ T Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTV-ETI 347 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402 + +L + ++ V V+ L K + + + A G+ + Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRRIDMTTFKEAIGTAAGLQADPNGNFIN 397 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 G + + ++ F + + + S M+ I A + +G LV FL Sbjct: 398 G-QVNVVTVQFDQPKAEKEKEPEKSGMNW---WLFGGITAGLLAIGG-LVWFL------- 445 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 L K+ E + + +S + +P + I + + L ++ Sbjct: 446 LARRKRKKEEEEYEEYLAEEEIAASNESILEIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 505 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550 + E AK+++KW Sbjct: 506 TK------------EHVEGTAKVIKKWL 521 >gi|315123886|ref|YP_004065890.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315017608|gb|ADT65701.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 317 Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 83/304 (27%), Positives = 146/304 (48%), Gaps = 12/304 (3%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPI---MLFMAARFFVNSPHYDNLYVKLEVS 58 +L Q+ Q +++ T R I V++ + LF + N+ Y L + S Sbjct: 5 NMLHQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRGSGSNANN-GYAVLVENVSPS 63 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 I L + NI +++ + I VP V + R+ +A++GL S G+E FD Sbjct: 64 SSAAIVAKLEQNNIPYKLESE-NKILVPQDQVYRQRMFIASEGLIKDSR-VGFEAFD-TQ 120 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178 +FG T+ Q++ RA+EGE+ARTI+++ I +A VHI P F + PTASV++ Sbjct: 121 AFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASVVVN 180 Query: 179 AINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQ 235 K + I+++V+AAVP L +V + D +G L E E +++ + Sbjct: 181 VREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIKFKS 240 Query: 236 AIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 + +E I + LA F G+D + +V + + Q+ + +YDP+ + RS + + Sbjct: 241 DQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPN-PIVRSEQTLNEE 299 Query: 295 QRSE 298 + Sbjct: 300 RTGR 303 >gi|229189843|ref|ZP_04316854.1| Flagellar M-ring protein fliF [Bacillus cereus ATCC 10876] gi|228593651|gb|EEK51459.1| Flagellar M-ring protein fliF [Bacillus cereus ATCC 10876] Length = 524 Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 95/568 (16%), Positives = 215/568 (37%), Gaps = 68/568 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++++ + SL L++ + +L + A +F Y +Y L +D I Sbjct: 1 MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDTDKQEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + LS+ +D++++ +G SI V + R + GLP +S + L + +S G + Sbjct: 56 TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112 Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178 +++ + + LE +I R + + A V I +P+ F + A+ TA++ + Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169 Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSL 231 I+ +++AAVP + +V+V+DS +++ E + K + Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + ++ +++ +I+ L + ++ +N D + Y D V RS + Sbjct: 230 EMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288 Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 +++ ++ + +T +P+ + + + + NYEI+ T Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTV-ETI 347 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402 + +L + ++ V V+ L K + + + A G+ + Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRRIDMTTFKEAIGTAAGLQADPNGNFIN 397 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 G + + ++ F + + + S M+ I A + +G LV FL Sbjct: 398 G-QVNVVTVQFDQPKAEKEKEPEKSGMNW---WLFGGITAGLLAIGG-LVWFL------- 445 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 L K+ E + + +S + +P + I + + L ++ Sbjct: 446 LARRKRKKEEEEYEEYLAEEEIAASNESILEIPEEKIVPEPKAEPEEPKEPTLDEQVQDA 505 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550 + E AK+++KW Sbjct: 506 TK------------EHVEGTAKVIKKWL 521 >gi|206970714|ref|ZP_03231666.1| putative flagellar M-ring protein FliF [Bacillus cereus AH1134] gi|228964729|ref|ZP_04125836.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar sotto str. T04001] gi|229178155|ref|ZP_04305526.1| Flagellar M-ring protein fliF [Bacillus cereus 172560W] gi|206734350|gb|EDZ51520.1| putative flagellar M-ring protein FliF [Bacillus cereus AH1134] gi|228605285|gb|EEK62735.1| Flagellar M-ring protein fliF [Bacillus cereus 172560W] gi|228794979|gb|EEM42478.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar sotto str. T04001] Length = 524 Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 95/568 (16%), Positives = 215/568 (37%), Gaps = 68/568 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++++ + SL L++ + +L + A +F Y +Y L +D I Sbjct: 1 MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDTDKQEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + LS+ +D++++ +G SI V + R + GLP +S + L + +S G + Sbjct: 56 TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112 Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178 +++ + + LE +I R + + A V I +P+ F + A+ TA++ + Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169 Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSL 231 I+ +++AAVP + +V+V+DS +++ E + K + Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + ++ +++ +I+ L + ++ +N D + Y D V RS + Sbjct: 230 EMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288 Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 +++ ++ + +T +P+ + + + + NYEI+ T Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTV-ETI 347 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402 + +L + ++ V V+ L K + + + A G+ + Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRRIDMTTFKEAIGTAAGLQADPNGNFIN 397 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 G + + ++ F + + + S M+ I A + +G LV FL Sbjct: 398 G-QVNVVTVQFDQPKAEKEKEPEKSGMNW---WLFGGITAGLLAIGG-LVWFL------- 445 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 L K+ E + + +S + +P + I + + L ++ Sbjct: 446 LARRKRKKEEEEYEEYLAEEEIAASNESILEIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 505 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550 + E AK+++KW Sbjct: 506 TK------------EHVEGTAKVIKKWL 521 >gi|228958026|ref|ZP_04119762.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar pakistani str. T13001] gi|228801651|gb|EEM48532.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar pakistani str. T13001] Length = 524 Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 95/568 (16%), Positives = 215/568 (37%), Gaps = 68/568 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++++ + SL L++ + +L + A +F Y +Y L +D I Sbjct: 1 MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + LS+ +D++++ +G SI V + R + GLP +S + L + +S G + Sbjct: 56 TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112 Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178 +++ + + LE +I R + + A V I +P+ F + A+ TA++ + Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169 Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSL 231 I+ +++AAVP + +V+V+DS +++ E + K + Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + ++ +++ +I+ L + ++ +N D + Y D V RS + Sbjct: 230 EMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288 Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 +++ ++ + +T +P+ + + + + NYEI+ T Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTV-ETI 347 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402 + +L + ++ V V+ L K + + + A G+ + Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRRIDMTTFKEAIGTAAGLQADPNGNFIN 397 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 G + + ++ F + + + S M+ I A + +G LV FL Sbjct: 398 G-QVNVVTVQFDQPKAEKEKEPEKSGMNW---WLFGGITAGLLAIGG-LVWFL------- 445 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 L K+ E + + +S + +P + I + + L ++ Sbjct: 446 LARRKRRKEEEEYEEYLAEEEVAASNESILEIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 505 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550 + E AK+++KW Sbjct: 506 TK------------EHVEGTAKVIKKWL 521 >gi|255025681|ref|ZP_05297667.1| flagellar MS-ring protein [Listeria monocytogenes FSL J2-003] Length = 550 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 101/550 (18%), Positives = 211/550 (38%), Gaps = 68/550 (12%) Query: 42 FVNSPHYDN-LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++N+P + LY L + +++ L++ +D+ + +G+ I V + R A Sbjct: 33 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA----LEGEIARTIQSISGIVAARVHI 156 G+P + + L +S G + +++ LE EI ++ + I +A V + Sbjct: 92 GIPYTGQDGNDILL--NSSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TIDSASVQL 147 Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDST 213 +P+ S F + + TA+V ++ N + I+ V+AAVPN+ DV ++D+ Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207 Query: 214 GKLLTANEM----ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 +++ + + + I AI ++ +I L++ +DNFR +N D Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVAVNFD 267 Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 + Y D KV + + S D + + ES ++P+ +++ + Sbjct: 268 EIKQNTEHYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTY-T 326 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 ++K E +NYE+++ L + ++ V V++ L + +AE Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQNALNKNGV----------DMAEF 375 Query: 389 NKIVSAATGINS-----------------------RRGDTITITSMDFLENQLFNSGTVQ 425 K + + G+ + GD +TI + FL+N Sbjct: 376 TKAIGVSAGLTPNMTTEEAGADGEAAAAPIFEGTFQNGD-VTIMPIQFLDNATPAEKDTT 434 Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485 + L+F V + L+R +++A + E P Sbjct: 435 EKAEPASKAWIWWLAGGLLFAVIA-AGIITYIILLKRKEQLEEALEPEEKD----YIPAE 489 Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545 + + P+ N D+ + L++R + +L M + + R A + Sbjct: 490 EAIINPEEHPDFNFQTDAFD----LSEPELKAR-----KESLKNKLGEMAKEDPGRAAAV 540 Query: 546 LRKWARSEIE 555 ++KW E Sbjct: 541 IQKWLNERQE 550 >gi|16802755|ref|NP_464240.1| flagellar MS-ring protein [Listeria monocytogenes EGD-e] gi|47095279|ref|ZP_00232890.1| flagellar M-ring protein FliF [Listeria monocytogenes str. 1/2a F6854] gi|224498795|ref|ZP_03667144.1| flagellar MS-ring protein [Listeria monocytogenes Finland 1988] gi|224501982|ref|ZP_03670289.1| flagellar MS-ring protein [Listeria monocytogenes FSL R2-561] gi|254829370|ref|ZP_05234057.1| flagellar MS-ring protein [Listeria monocytogenes FSL N3-165] gi|254830296|ref|ZP_05234951.1| flagellar MS-ring protein [Listeria monocytogenes 10403S] gi|254900051|ref|ZP_05259975.1| flagellar MS-ring protein [Listeria monocytogenes J0161] gi|254911396|ref|ZP_05261408.1| flagellar MS-ring protein [Listeria monocytogenes J2818] gi|254935723|ref|ZP_05267420.1| flagellar MS-ring protein [Listeria monocytogenes F6900] gi|255028428|ref|ZP_05300379.1| flagellar MS-ring protein [Listeria monocytogenes LO28] gi|284801043|ref|YP_003412908.1| flagellar MS-ring protein [Listeria monocytogenes 08-5578] gi|284994185|ref|YP_003415953.1| flagellar MS-ring protein [Listeria monocytogenes 08-5923] gi|16410102|emb|CAC98791.1| lmo0713 [Listeria monocytogenes EGD-e] gi|47016350|gb|EAL07272.1| flagellar M-ring protein FliF [Listeria monocytogenes str. 1/2a F6854] gi|258601784|gb|EEW15109.1| flagellar MS-ring protein [Listeria monocytogenes FSL N3-165] gi|258608307|gb|EEW20915.1| flagellar MS-ring protein [Listeria monocytogenes F6900] gi|284056605|gb|ADB67546.1| flagellar MS-ring protein [Listeria monocytogenes 08-5578] gi|284059652|gb|ADB70591.1| flagellar MS-ring protein [Listeria monocytogenes 08-5923] gi|293589334|gb|EFF97668.1| flagellar MS-ring protein [Listeria monocytogenes J2818] Length = 550 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 101/550 (18%), Positives = 211/550 (38%), Gaps = 68/550 (12%) Query: 42 FVNSPHYDN-LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++N+P + LY L + +++ L++ +D+ + +G+ I V + R A Sbjct: 33 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA----LEGEIARTIQSISGIVAARVHI 156 G+P + + L +S G + +++ LE EI ++ + I +A V + Sbjct: 92 GIPYTGQDGNDILL--NSSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TIDSASVQL 147 Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDST 213 +P+ S F + + TA+V ++ N + I+ V+AAVPN+ DV ++D+ Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207 Query: 214 GKLLTANEM----ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 +++ + + + I AI ++ +I L++ +DNFR +N D Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVAVNFD 267 Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 + Y D KV + + S D + + ES ++P+ +++ + Sbjct: 268 EIKQNTEHYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTY-T 326 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 ++K E +NYE+++ L + ++ V V++ L + +AE Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQNALNKNGV----------DMAEF 375 Query: 389 NKIVSAATGINS-----------------------RRGDTITITSMDFLENQLFNSGTVQ 425 K + + G+ + GD +TI + FL+N Sbjct: 376 TKAIGVSAGLTPNMTTEEAGADGEAAAAPTFEGTFQNGD-VTIMPIQFLDNATPAEKDTT 434 Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485 + L+F V + L+R +++A + E P Sbjct: 435 EKAEPASKAWIWWLAGGLLFAVIA-AGIITYIILLKRKEQLEEALEPEEKD----YIPAE 489 Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545 + + P+ N D+ + L++R + +L M + + R A + Sbjct: 490 EAIINPEEHPDFNFQTDAFD----LSEPELKAR-----KESLKNKLGEMAKEDPGRAAAV 540 Query: 546 LRKWARSEIE 555 ++KW E Sbjct: 541 IQKWLNERQE 550 >gi|152975158|ref|YP_001374675.1| flagellar MS-ring protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023910|gb|ABS21680.1| flagellar M-ring protein FliF [Bacillus cytotoxicus NVH 391-98] Length = 521 Score = 224 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 92/569 (16%), Positives = 215/569 (37%), Gaps = 73/569 (12%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSDVNR 62 ++++ F+ SL +++ + IL + A + P Y +Y L +D Sbjct: 1 MEKIKNVFQ---SLKTWHKMVIGAAIL---AIGTGALLYFTLPDKYVVVYQNLNDADKQE 54 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I+ LS+ +D+++ ++G +I VP+ R + GLP +S + L + +S G Sbjct: 55 ITAELSKLGVDYQLVNDG-AIKVPTKDAPWIRKEMNGMGLPFNSKSGEEILLE--SSLGS 111 Query: 123 TSFMQEITRV----RALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMI 177 + +++ ++ + LE +I R +I +A V I +P+ F + A+ TA++ + Sbjct: 112 SEQDKKMKQLVGTKKQLEQDIVRNFATI---ESANVQITLPEKETIFDEEKAKGTAAITV 168 Query: 178 RAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-----ERNILGKS 230 I+ +++AAV + +V+V+DS +++ + K Sbjct: 169 GVKRGQLLTEDQVAGIQQMISAAVSGVKPEEVSVIDSKKGIVSKGADASTHASSSSYEKE 228 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290 + + Q I+++++ +I+ L + F+ +N D + Y D V RS + Sbjct: 229 VEMQQQIENKLKQDIDATLMTMFKANEFKVNTKVSVNYDEVTRQSEKYG-DKGVLRSRQD 287 Query: 291 SKDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 ++ ++ + +T +P+ + + + + + NYEI+ T Sbjct: 288 QQERSTAQEGADAKQGAGITANGEVPNYGTNNNQNGKVVYDNNNGNKIENYEIDKTV-ET 346 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG--INSR---- 401 + +L + ++ V V+ LT K + + + A G I+ Sbjct: 347 IKKHPELTKTNVVVWVDNDTLT----------KRRIDMTTFKEAIGTAAGLQIDPNGEFT 396 Query: 402 RGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461 G + + ++ F + + + + + + + LV +L R Sbjct: 397 NG-QVNVVTVQFDQQKEEKTKEPEPNGFNWWLIGGIAGGLLAL----GGLVWYLLARRKR 451 Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521 + I++ + + T +P + + + L ++ Sbjct: 452 KQEEIEEYESLAEEEVAATDE-------TIMEIPEEKL---EPTEQAEPTEPTLDEQVQD 501 Query: 522 YVSKQSDLRLLHMIEINEERFAKILRKWA 550 + + E AK+++KW Sbjct: 502 ------------AAKEHVEGTAKVIKKWL 518 >gi|218232102|ref|YP_002366431.1| flagellar MS-ring protein [Bacillus cereus B4264] gi|218160059|gb|ACK60051.1| putative flagellar M-ring protein FliF [Bacillus cereus B4264] Length = 524 Score = 224 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 94/568 (16%), Positives = 215/568 (37%), Gaps = 68/568 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++++ + SL L++ + +L + A +F Y +Y L +D I Sbjct: 1 MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDTDKQEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + LS+ +D++++ +G SI V + R + GLP +S + L + +S G + Sbjct: 56 TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112 Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178 +++ + + LE +I R + + A V I +P+ F + A+ TA++ + Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169 Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSL 231 I+ +++AAVP + +V+V+DS +++ E + K + Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + ++ +++ +I+ L + ++ +N D + Y D V RS + Sbjct: 230 EMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288 Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 +++ ++ + +T +P+ + + + + NYEI+ T Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTV-ETI 347 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402 + +L + ++ V V+ L K + + + A G+ + Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRRIDMTTFKEAIGTAAGLQADPNGNFIN 397 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 G + + ++ F + + + S ++ I A + +G LV FL Sbjct: 398 G-QVNVVTVQFDQPKAEKEKEPEKSGINW---WLFGGITAGLLAIGG-LVWFL------- 445 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 L K+ E + + +S + +P + I + + L ++ Sbjct: 446 LARRKRKKEEEEYEEYLAEEEIAASNESILEIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 505 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550 + E AK+++KW Sbjct: 506 TK------------EHVEGTAKVIKKWL 521 >gi|228907379|ref|ZP_04071237.1| Flagellar M-ring protein fliF [Bacillus thuringiensis IBL 200] gi|228852240|gb|EEM97036.1| Flagellar M-ring protein fliF [Bacillus thuringiensis IBL 200] Length = 524 Score = 224 bits (571), Expect = 3e-56, Method: Composition-based stats. Identities = 95/568 (16%), Positives = 215/568 (37%), Gaps = 68/568 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++++ + SL L++ + +L + A +F Y +Y L +D I Sbjct: 1 MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDTDKQEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + LS+ +D++++ +G SI V + R + GLP +S + L + +S G + Sbjct: 56 TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112 Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178 +++ + + LE +I R + + A V I +P+ F + A+ TA++ + Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169 Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSL 231 I+ +++AAVP + +V+V+DS +++ E + K + Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGTDEAHSSSSSSYEKEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + ++ +++ +I+ L + ++ +N D + Y D V RS + Sbjct: 230 EMQHQLEGKLKQDIDATLMTMFKSNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288 Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 +++ ++ + +T +P+ + + + + NYEI+ T Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTV-ETI 347 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402 + +L + ++ V V+ L K + + + A G+ + Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRRIDMTTFKEAIGTAAGLQADPNGNFIN 397 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 G + + ++ F + + + S M+ I A + +G LV FL Sbjct: 398 G-QVNVVTVQFDQPKAEKEKEPEKSGMNW---WLFGGITAGLLAIGG-LVWFL------- 445 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 L K+ E + + +S + +P + I + + L ++ Sbjct: 446 LARRKRKKEEEEYEEYLAEEEVAASNESILEIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 505 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550 + E AK+++KW Sbjct: 506 TK------------EHVEGTAKVIKKWL 521 >gi|307264866|ref|ZP_07546428.1| secretory protein YscJ/FliF family protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306920124|gb|EFN50336.1| secretory protein YscJ/FliF family protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 253 Score = 223 bits (569), Expect = 5e-56, Method: Composition-based stats. Identities = 62/248 (25%), Positives = 116/248 (46%), Gaps = 14/248 (5%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 +QL F+ + ++ I+A ++ + I L + + VN P+Y LY L + D Sbjct: 7 NFREQLTNFWNKFDKKQKIQLGIIAILLFIGISLLV---YIVNRPNYVVLYSDLSIKDAG 63 Query: 62 RISVALSEA-NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK-VNS 119 + L I ++IS++G++I VP+ + R+ LA +G+P G+ D NS Sbjct: 64 AVVEKLKTEFKIPYKISNDGTTILVPAQYKDEVRMKLATEGIPQG----GFSFQDAMNNS 119 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARPTASVMI 177 T + + L+ EI ++++I G+ A V+IV+PD +F + TA+VM+ Sbjct: 120 LATTDQERRQKYLYFLQNEIQNSLKTIDGVQDAIVNIVVPDQNAFVLSNTTNQATAAVML 179 Query: 178 RAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIV 234 + I V+ +V L +VTV+D+ GK+LTA ++ ++ Sbjct: 180 TLKPGVTLSSSQVKGIIDFVSKSVEGLKPENVTVIDNNGKILTAESDTTAENANTQFALQ 239 Query: 235 QAIQHEIE 242 + + + Sbjct: 240 KKFKKTYK 247 >gi|226327719|ref|ZP_03803237.1| hypothetical protein PROPEN_01592 [Proteus penneri ATCC 35198] gi|225203423|gb|EEG85777.1| hypothetical protein PROPEN_01592 [Proteus penneri ATCC 35198] Length = 396 Score = 223 bits (569), Expect = 5e-56, Method: Composition-based stats. Identities = 77/412 (18%), Positives = 156/412 (37%), Gaps = 54/412 (13%) Query: 177 IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQ 235 + AI H+VA++V + VT++D +GKLLT + R++ L VQ Sbjct: 3 LLQGRALDEGQINAIVHIVASSVAGMPDSSVTIVDQSGKLLTQPDALGRDLNSIQLKYVQ 62 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 ++ + I L +G N + V A+++ + Y P+ ++ SK Sbjct: 63 ELESRYQQRIETLLGPIVGRGNVHAQVTAQVDFSHTEETAEEYKPNQPPNQAAVRSKQLS 122 Query: 296 RSETSQP---ESAVTVEQNMP----------------------HVSDRKVPLPRSLENTD 330 +SE + N P + + L R+ + Sbjct: 123 QSEQNGGMLAGGVPGALSNQPVAPPQAPIETPKAQEGEKTEGTNATGTNRSLTRNPNSNS 182 Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL---------TEVLGRSADQGKI 381 + +E +NYE++ + +ERLS+AV+VN + E + + Sbjct: 183 RLDETTNYEVDRRIRHIKRPVGNVERLSVAVIVNYKTVENKKEAAEGEEPVVETKLVPLT 242 Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441 D + +I +V A G + RGD++++ + F + + +IL++ Sbjct: 243 DEQIQQIEGLVREAMGYSQERGDSLSVVNSQFNDIEEKVITVPVWENPEILAKALDLGRW 302 Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501 L+ ++ +L L + + + A + V + T L D++ Sbjct: 303 LLLIIIAWILWRKLVKPQIEKRREAEAAAQKAV--------------LKTKLQVKDDV-- 346 Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 D + D + + + R+++ + Q R+ M E + A ++R+W E Sbjct: 347 DEAELDDEARRKQARKRVSAELQSQ---RIREMAEKDPRVVAMVIREWMSKE 395 >gi|228920457|ref|ZP_04083802.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839087|gb|EEM84383.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 524 Score = 223 bits (569), Expect = 6e-56, Method: Composition-based stats. Identities = 94/568 (16%), Positives = 215/568 (37%), Gaps = 68/568 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++++ + SL L++ + +L + A +F Y +Y L +D I Sbjct: 1 MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + LS+ +D++++ +G SI V + R + GLP +S + L + +S G + Sbjct: 56 TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112 Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178 +++ + + LE +I R + + A V I +P+ F + A+ TA++ + Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169 Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSL 231 I+ +++AAVP + +V+V+DS +++ E + K + Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + ++ +++ +I+ L + ++ +N D + Y D V RS + Sbjct: 230 EMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288 Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 +++ ++ + +T +P+ + + + + NYEI+ T Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTV-ETI 347 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402 + +L + ++ V V+ L K + + + + G+ + Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRRIDMTTFKEAIGTSAGLQADPNGNFIN 397 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 G + + ++ F + + + S M+ I A + +G LV FL Sbjct: 398 G-QVNVVTVQFDQPKAEKEKEPEKSGMNW---WLFGGITAGLLAIGG-LVWFL------- 445 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 L K+ E + + +S + +P + I + + L ++ Sbjct: 446 LARRKRKKEEEEYEEYLAEEEIAASNESILEIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 505 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550 + E AK+++KW Sbjct: 506 TK------------EHVEGTAKVIKKWL 521 >gi|313624697|gb|EFR94654.1| flagellar M-ring protein FliF [Listeria innocua FSL J1-023] Length = 549 Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats. Identities = 104/549 (18%), Positives = 217/549 (39%), Gaps = 67/549 (12%) Query: 42 FVNSPHYDN-LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++N+P + LY L + +++ L++ +D+ + +G+ I V + R A Sbjct: 33 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA----LEGEIARTIQSISGIVAARVHI 156 G+P + + L +S G + +++ LE EI ++ + + +A V + Sbjct: 92 GIPYTGQDGNDILL--NSSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TVDSASVQL 147 Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDST 213 +P+ S F + + TA+V ++ N + I+ V+AAVPN+ DV ++D+ Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTKEQVLGIQRTVSAAVPNVASDDVAIIDTK 207 Query: 214 GKLLTANEM----ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 +++ + + + I AI ++ +I L++ +DNFR +N D Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVTVNFD 267 Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 + Y D KV + + S D + T+Q ES ++P+ +++ + Sbjct: 268 EIKQNTEHYPNDGKVRSNQKDTSTDTSKGSTNQTESGTASNADVPNYTEQNGDDTNTY-T 326 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 ++K E +NYE+++ L + ++ V V++ L + +AE Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQQSLNKNGV----------DMAEF 375 Query: 389 NKIVSAATGINS----------------------RRGDTITITSMDFLENQLFNSGTVQV 426 K + + G+ + GD +TI + FL+NQ Sbjct: 376 TKAIGVSAGLTPNMTTEEAGEGGEAATPTFEGTFQNGD-VTIMPIQFLDNQTPVEKDTTE 434 Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486 ++ +L+F + + + L+R I++A + E P Sbjct: 435 KAEPASKAWVWWLVGSLLFALIAAGIIAYIIF-LKRKEQIEEALEAEEKD----FIPAEE 489 Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546 + V P+ N D+ + L++R + +L M + + R A ++ Sbjct: 490 AIVNPEEHPDFNFQTDAFD----LSEPELKAR-----KESLKNKLGEMAKEDPGRAAAVI 540 Query: 547 RKWARSEIE 555 +KW E Sbjct: 541 QKWLNERQE 549 >gi|16799796|ref|NP_470064.1| flagellar MS-ring protein [Listeria innocua Clip11262] gi|16413173|emb|CAC95953.1| lin0721 [Listeria innocua Clip11262] Length = 550 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 104/550 (18%), Positives = 217/550 (39%), Gaps = 68/550 (12%) Query: 42 FVNSPHYDN-LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++N+P + LY L + +++ L++ +D+ + +G+ I V + R A Sbjct: 33 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA----LEGEIARTIQSISGIVAARVHI 156 G+P + + L +S G + +++ LE EI ++ + + +A V + Sbjct: 92 GIPYTGQDGNDILL--NSSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TVDSASVQL 147 Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDST 213 +P+ S F + + TA+V ++ N + I+ V+AAVPN+ DV ++D+ Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTKEQVLGIQRTVSAAVPNVASDDVAIIDTK 207 Query: 214 GKLLTANEM----ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 +++ + + + I AI ++ +I L++ +DNFR +N D Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVTVNFD 267 Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 + Y D KV + + S D + T+Q ES ++P+ +++ + Sbjct: 268 EIKQNTEHYPNDGKVRSNQKETSTDTSKGSTNQTESGTASNADVPNYTEQNGDDTNTY-T 326 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 ++K E +NYE+++ L + ++ V V++ L + +AE Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQQSLNKNGV----------DMAEF 375 Query: 389 NKIVSAATGINS-----------------------RRGDTITITSMDFLENQLFNSGTVQ 425 K + + G+ + GD +TI + FL+NQ Sbjct: 376 TKAIGVSAGLTPNMTTEEAGEGGEAAATPTFEGTFQNGD-VTIMPIQFLDNQTPVEKDTT 434 Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485 ++ +L+F + + + L+R I++A + E P Sbjct: 435 EKAEPASKAWVWWLVGSLLFALIAAGIIAYIIF-LKRKEQIEEALEAEEKD----FIPAE 489 Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545 + V P+ N D+ + L++R + +L M + + R A + Sbjct: 490 EAIVNPEEHPDFNFQTDAFD----LSEPELKAR-----KESLKNKLGEMAKEDPGRAAAV 540 Query: 546 LRKWARSEIE 555 ++KW E Sbjct: 541 IQKWLNERQE 550 >gi|313620042|gb|EFR91558.1| flagellar M-ring protein FliF [Listeria innocua FSL S4-378] Length = 550 Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats. Identities = 104/550 (18%), Positives = 217/550 (39%), Gaps = 68/550 (12%) Query: 42 FVNSPHYDN-LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++N+P + LY L + +++ L++ +D+ + +G+ I V + R A Sbjct: 33 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA----LEGEIARTIQSISGIVAARVHI 156 G+P + + L +S G + +++ LE EI ++ + + +A V + Sbjct: 92 GIPYTGQDGNDILL--NSSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TVDSASVQL 147 Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDST 213 +P+ S F + + TA+V ++ N + I+ V+AAVPN+ DV ++D+ Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTKEQVLGIQRTVSAAVPNVASDDVAIIDTK 207 Query: 214 GKLLTANEM----ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 +++ + + + I AI ++ +I L++ +DNFR +N D Sbjct: 208 NGVISEADTSQEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVTVNFD 267 Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 + Y D KV + + S D + T+Q ES ++P+ +++ + Sbjct: 268 EIKQNTEHYPNDGKVRSNQKETSTDTSKGSTNQTESGTASNADVPNYTEQNGDDTNTY-T 326 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 ++K E +NYE+++ L + ++ V V++ L + +AE Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQQSLNKNGV----------DMAEF 375 Query: 389 NKIVSAATGINS-----------------------RRGDTITITSMDFLENQLFNSGTVQ 425 K + + G+ + GD +TI + FL+NQ Sbjct: 376 TKAIGVSAGLTPNMTTEEAGEGGEAAATPTFEGTFQNGD-VTIMPIQFLDNQTPVEKDTT 434 Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485 ++ +L+F + + + L+R I++A + E P Sbjct: 435 EKAEPASKAWVWWLVGSLLFALIAAGIIAYIIF-LKRKEQIEEALEAEEKD----FIPAE 489 Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545 + V P+ N D+ + L++R + +L M + + R A + Sbjct: 490 EAIVNPEEHPDFNFQTDAFD----LSEPELKAR-----KESLKNKLGEMAKEDPGRAAAV 540 Query: 546 LRKWARSEIE 555 ++KW E Sbjct: 541 IQKWLNERQE 550 >gi|299822289|ref|ZP_07054175.1| flagellar M-ring protein FliF [Listeria grayi DSM 20601] gi|299815818|gb|EFI83056.1| flagellar M-ring protein FliF [Listeria grayi DSM 20601] Length = 554 Score = 220 bits (560), Expect = 5e-55, Method: Composition-based stats. Identities = 102/570 (17%), Positives = 220/570 (38%), Gaps = 78/570 (13%) Query: 26 ASVILVPIMLFMAARFFVNSPHYDN-LYVKLEVSDVNRISVALSEANIDFRISDNGSSIS 84 ++++ ++ A ++N P L+ L + +++ L + +D+ I NG I Sbjct: 17 VAILVGFFVIVTVALLYMNQPSTKVTLFKNLSETSQTQVTDELGKIGVDYTIDKNGD-IL 75 Query: 85 VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA----LEGEIA 140 V S+ R + G+P + ++ L +S G + +++ LE EI Sbjct: 76 VDKSVEKLVRDKMEEDGIPYTGTDGNDILL--NSSLGASEEDKKMQEQVGTKANLEKEIL 133 Query: 141 RTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAA 197 ++ ++ + +A V + MP+ F + + +A+V I+ + I+ V+A Sbjct: 134 QSYSNV--VDSATVQMTMPESDSIFEEASQKGSAAVTIKTKGQMSLSTAQVQGIQRTVSA 191 Query: 198 AVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEMNINKALAAF 252 A+PN++ +V V+DS +++ A + + + I AI +I+ +I L++ Sbjct: 192 AIPNINAEEVAVIDSKRGVVSDSATTAKDEGSSAYKNEVDIQDAIGKDIKTDIEDTLSSI 251 Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNM 312 + NFR +N D + + Y D KV + S + + ++ S ++ Sbjct: 252 FALKNFRVNTNVTVNFDEIKQKTEKYPRDGKVRSEQKDSTTDKSTGSAGQASGTESNADV 311 Query: 313 PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372 P+ ++ + ++K E +NYE+++ L + ++ V V++ L Sbjct: 312 PNYTENGGNSDSTY-TSEKNSETTNYELDSTMQEIKKHP-ALAKTNVVVWVDQNTL---- 365 Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSR----RGD------------------------ 404 D ++D + E K V A G+ GD Sbjct: 366 ----DANRVD--MNEFTKAVGVAAGLTPNMTDPNGDGGGNANANADGNGTNQEVFDGTFK 419 Query: 405 --TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 +TI + FL++ + + + + + L+ L+ +V ++ L+R Sbjct: 420 NGEVTIMPITFLKDDTAAPTAKPAAKPASHAWVWWILGSTLLLLIAGGIVFYIIW--LKR 477 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 I++A + P + V L + +D D + L R N Sbjct: 478 KEQIEEAIAED-------YISPEEALVEKELSEQPDFQID---PDAMTEPSILTRRENLK 527 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARS 552 ++ + + + R A I++KW Sbjct: 528 E------KISDLAKEDPGRAAAIIQKWLNE 551 >gi|225569979|ref|ZP_03779004.1| hypothetical protein CLOHYLEM_06074 [Clostridium hylemonae DSM 15053] gi|225161449|gb|EEG74068.1| hypothetical protein CLOHYLEM_06074 [Clostridium hylemonae DSM 15053] Length = 536 Score = 220 bits (560), Expect = 6e-55, Method: Composition-based stats. Identities = 100/569 (17%), Positives = 204/569 (35%), Gaps = 62/569 (10%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L QL F + + +I + + I + +N Y L+ + + +I Sbjct: 8 LGQLKDFLGKYS---KKTKIIAGTAAVAVIAAAVIIALVLNHKDYTTLFTGVTEEEATKI 64 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L E+ +DF+ +NG I V + K R L +G P S Y++F + + T Sbjct: 65 IGKLQESGVDFQYKENGD-ILVDEKVADKTRADLVYEGYPKSGFT--YDVFTENSGGMTT 121 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA-----RPTASVMIR 178 +E ++ L+ I TI+ G+ A+V+I + + + P+ASV++ Sbjct: 122 DSEKETYKLYDLQDRIGATIRFFDGVKDAKVNIALKEEQKYVLEEDGEKAGTPSASVVVT 181 Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL--SIV 234 + K A AI+ LVA +VP ++M +V V D G ++ N+ + G + I Sbjct: 182 MESGESPSEKQAAAIQRLVAKSVPEMEMENVAVFDGNGIEVSVNKDGSSASGSNATEEIA 241 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 Q I+ +I + L +F G +N R + ++NM+ Y K++ + + Sbjct: 242 QLIEMQISKKVINVLGSFYGAENIRVSARGKVNMEKVIRESTTYTTPEKIDEKDKTGIVS 301 Query: 295 QRSETSQ------PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 S T + V + + + + + +Y +N Sbjct: 302 SESTTKDTVNGGGAGTGVAGSETNADTPEYNAGTDNNASGSASESATRDYLVNQVKEQGE 361 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-RGDTIT 407 D LE L+++V +N + + E+ +V ATGI + R + IT Sbjct: 362 LDTGVLEDLTVSVAINGKNAGNIS------------MNELRDLVGNATGIAAADRLEKIT 409 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 I + F E + + + + + + Sbjct: 410 IVNAPFYEENADKDTKEVSNILKNIKDNL-------------------------PVIAVA 444 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 + +++ +++ + ++I + + S++ Sbjct: 445 AVIAVVIIILAVILIRRRRKRRMEEEEELEDLLIPDVTEEIRKPE---ILNLKNEKSREL 501 Query: 528 DLRLLHMIEINEERFAKILRKWARSEIED 556 + + N E A+++R W +D Sbjct: 502 RENVRDFADENPEISAQMIRNWLNGGEQD 530 >gi|290894011|ref|ZP_06556986.1| flagellar M-ring protein FliF [Listeria monocytogenes FSL J2-071] gi|290556457|gb|EFD89996.1| flagellar M-ring protein FliF [Listeria monocytogenes FSL J2-071] Length = 550 Score = 219 bits (559), Expect = 7e-55, Method: Composition-based stats. Identities = 99/540 (18%), Positives = 214/540 (39%), Gaps = 48/540 (8%) Query: 42 FVNSPHYDN-LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++N+P + LY L + +++ L++ +D+ + +G+ I V + R A Sbjct: 33 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA----LEGEIARTIQSISGIVAARVHI 156 G+P + + L +S G + +++ LE EI ++ + + +A V + Sbjct: 92 GIPYTGQDGNDILL--NSSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TVDSASVQL 147 Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDST 213 +P+ S F + + TA+V ++ N + I+ V+AAVPN+ DV ++D+ Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207 Query: 214 GKLLTANEM----ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 +++ + + + I AI ++ +I L++ +DNFR +N D Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVTVNFD 267 Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 + Y D KV + + S D + + ES ++P+ +++ + Sbjct: 268 EIKQNTEHYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTY-T 326 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 ++K E +NYE+++ L + ++ V V++ L + A+ K A + Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQNALNKNGVDMAEFTKAIGVSAGL 385 Query: 389 N-KIVSAATGINS------------RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435 + + G + + GD +TI + FL+N Sbjct: 386 TPNMTTEEAGADGETAAAPTFEGTFQNGD-VTIMPIQFLDNATPAEKDTTEKAAPASKAW 444 Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495 + +L+F + + + L+R +++A + E P + + P Sbjct: 445 IWWLAGSLLFAIIAAGIIAYIIF-LKRKEQLEEALEPEEKD----YIPAEEAIINPEEHP 499 Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + N D+ + L++R + +L M + + R A +++KW E Sbjct: 500 DFNFQTDAFD----LSEPELKAR-----KESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 550 >gi|253573518|ref|ZP_04850861.1| flagellar M-ring protein FliF [Paenibacillus sp. oral taxon 786 str. D14] gi|251847046|gb|EES75051.1| flagellar M-ring protein FliF [Paenibacillus sp. oral taxon 786 str. D14] Length = 527 Score = 219 bits (559), Expect = 7e-55, Method: Composition-based stats. Identities = 94/574 (16%), Positives = 209/574 (36%), Gaps = 79/574 (13%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 D+ L ++ + +T +L S ++ + + Y+ + L+ +D I Sbjct: 9 RDRFLGYWNQFSKKQKT---LLVSTATFILLAIILLTIQFSKTEYEVAFTGLDSTDAAGI 65 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L I +++ +G++ISVPS + ++ + +QG+ + S + + G+T Sbjct: 66 INYLESGGISYKLGPDGTTISVPSKDAARVKVDVGSQGIVQNGSIGLEAFNESSSLIGMT 125 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK--IGARPTASVMIRAIN 181 + A+ GE+ + ++ + G+ A+V I +P F + TAS+++ Sbjct: 126 DNEFNVKYKNAINGEVEQLLKRMQGVNDAKVLINLPAENVFASPDEQEKATASIVLTFKP 185 Query: 182 PSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME------RNILGKSLSI 233 + +LV +VPNL + ++++ S +L + + + +++++ Sbjct: 186 GYRPNQEAIDGYFNLVKTSVPNLPVENISLSSSDDTILLPSGQGGTTGSLTSAVQENMAL 245 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-DSKVERSIRLS- 291 + + ++ ++ + L+ G D V ++LN D ++ + P D++ + I +S Sbjct: 246 QKKFESDVRQSVKQFLSRLTGPDKIEVLVASKLNFDQVSQKDNLVTPVDTENMKGIEISA 305 Query: 292 KDAQRSETSQPESAVTVEQ-NMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 + Q+S T V V + ++++ NYE+N + Sbjct: 306 QKVQKSYTGSANPTSGVPGTGEEDVVNYPSSETNGGSSSEESSSTINYEVNRITKDIIAS 365 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG----------INS 400 Y ++ L+I V V E L + I I+ G + Sbjct: 366 PYVIKDLTINVAVEPPEGQETLDENTRSA--------IENILKNIVGSYLADSGTTYTDE 417 Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460 +++ S F + TVQ + + + S V A + + L + Sbjct: 418 ELQRKVSVLSQPFHSD------TVQKAGLSLSSPLVWGVGGAALLALAGLGIVLFRRR-- 469 Query: 461 RRLHNIDDAKKGEVGGKSILSP-PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519 K+ + + I P P ++ + N+N Sbjct: 470 ---------KQAQEEEEEIALPLTPEFPSINLDTVTNEN--------------------- 499 Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 Q +L + + + F +LR W E Sbjct: 500 ------QVRKQLETLAKKKPDEFVNLLRTWLADE 527 >gi|217965189|ref|YP_002350867.1| flagellar M-ring protein FliF [Listeria monocytogenes HCC23] gi|217334459|gb|ACK40253.1| flagellar M-ring protein FliF [Listeria monocytogenes HCC23] gi|307570252|emb|CAR83431.1| flagellar M-ring protein [Listeria monocytogenes L99] Length = 550 Score = 219 bits (559), Expect = 8e-55, Method: Composition-based stats. Identities = 99/540 (18%), Positives = 214/540 (39%), Gaps = 48/540 (8%) Query: 42 FVNSPHYDN-LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++N+P + LY L + +++ L++ +D+ + +G+ I V + R A Sbjct: 33 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA----LEGEIARTIQSISGIVAARVHI 156 G+P + + L +S G + +++ LE EI ++ + + +A V + Sbjct: 92 GIPYTGQDGNDILL--NSSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TVDSASVQL 147 Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDST 213 +P+ S F + + TA+V ++ N + I+ V+AAVPN+ DV ++D+ Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207 Query: 214 GKLLTANEM----ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 +++ + + + I AI ++ +I L++ +DNFR +N D Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVTVNFD 267 Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 + Y D KV + + S D + + ES ++P+ +++ + Sbjct: 268 EIKQNTEHYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTY-T 326 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 ++K E +NYE+++ L + ++ V V++ L + A+ K A + Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQNALNKNGVDMAEFTKAIGVSAGL 385 Query: 389 N-KIVSAATGINS------------RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435 + + G + + GD +TI + FL+N Sbjct: 386 TPNMTTEEAGADGEVAAAPTFEGTFQNGD-VTIMPIQFLDNATPAEKDTTEKAAPASKAW 444 Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495 + +L+F + + + L+R +++A + E P + + P Sbjct: 445 IWWLAGSLLFAIIAAGIIAYIIF-LKRKEQLEEALEPEEKD----YIPAEEAIINPEEHP 499 Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + N D+ + L++R + +L M + + R A +++KW E Sbjct: 500 DFNFQTDAFD----LSEPELKAR-----KESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 550 >gi|229017034|ref|ZP_04173954.1| Flagellar M-ring protein fliF [Bacillus cereus AH1273] gi|229023215|ref|ZP_04179726.1| Flagellar M-ring protein fliF [Bacillus cereus AH1272] gi|228738140|gb|EEL88625.1| Flagellar M-ring protein fliF [Bacillus cereus AH1272] gi|228744305|gb|EEL94387.1| Flagellar M-ring protein fliF [Bacillus cereus AH1273] Length = 525 Score = 219 bits (557), Expect = 1e-54, Method: Composition-based stats. Identities = 89/568 (15%), Positives = 205/568 (36%), Gaps = 66/568 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 +++L F+ SL L++ + +L + A +F Y +Y L +D I Sbjct: 1 MEKLKNVFQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + LS+ +D++++ +G SI V + R + GLP +S + L + +S G + Sbjct: 56 TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112 Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178 +++ + + LE +I R + I A V I +P+ F + A+ TA++ + Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRN---FAVIETANVQITLPEKETIFDEEKAKGTAAITVG 169 Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSL 231 I+ +++AAVP + +V+V+DS +++ E + K + Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGAGEAHSSSSSSYEKEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + I+ +++ +I+ L + ++ +N D + Y D V RS + Sbjct: 230 EMQHQIEGKLKRDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288 Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 +++ ++ + +T +P+ + + + + NYEI+ Sbjct: 289 EESSTAQEGADMKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIK 348 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402 +L + ++ V V+ L K + + + A G+ + Sbjct: 349 KHP-ELTKTNVVVWVDNDTLV----------KRRIDMETFKEAIGTAAGLQADPNGNFTN 397 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 G + + ++ F + + + S M+ +L+G + Sbjct: 398 G-QVNVVTVQFDQPKEDKPKKPEESGMNW-------------WLIGGITGG--------L 435 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 L K + + + ++ ++ + Sbjct: 436 LALALLIWFLLARSKKKKEEEEYEEYLAEEEVAVSSESIMEIPEEKIVPEPKREPEPVEP 495 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550 D ++ + E AK+++KW Sbjct: 496 TEPTLDDQVQEATREHVEGTAKVIKKWL 523 >gi|302387796|ref|YP_003823618.1| flagellar M-ring protein FliF [Clostridium saccharolyticum WM1] gi|302198424|gb|ADL05995.1| flagellar M-ring protein FliF [Clostridium saccharolyticum WM1] Length = 534 Score = 217 bits (554), Expect = 3e-54, Method: Composition-based stats. Identities = 95/563 (16%), Positives = 193/563 (34%), Gaps = 53/563 (9%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++ + F + + I+ + V + A P Y+ ++ + + +I Sbjct: 1 MENIKGFLSKFSDKAKKIIIAAVVGVAVVAGAVIMALSMREKP-YEVMFTSVGNEEAKQI 59 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L E +D++ + I VP++ + + L ++G P S Y++F + T Sbjct: 60 IGKLQEEKVDYQYLN--GDILVPAAQMDVTKARLVSEGYPKSGFT--YDVFKNNVNLMTT 115 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR---KIGARPTASVMIRAI 180 ++ ++ LE I TIQ G+ A V I + + + +A ++ Sbjct: 116 DSDRQTFKLYDLETRIGSTIQLFDGVKEAYVTIALGETSKYALSEDDAQEASAQAVVVMK 175 Query: 181 NPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQA 236 + + A++I+ L++ ++P + + +V+V D GK ++ + E +I + I + Sbjct: 176 DGGSPTEEQAKSIQLLISRSIPGMVISNVSVFDGNGKEVSTDSGEEDINSGKTAEEISKL 235 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD-------PDSKVERSIR 289 I+ +I + L G N R +V +NMD VY+ D S Sbjct: 236 IEDQIAAKVMNVLGPVYGNGNVRVSVKGTVNMDKLIRESTVYNVPEKIDENDKTGLTSEE 295 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 E N Y +N Sbjct: 296 SIYREYSGNGQTASGVAGSEANADIPQYNAGGAAGDNSAYGSSSLNRKYLLNQIKEQGQI 355 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI-NSRRGDTITI 408 + LE L+++VVVN G + +I + A GI + R + IT Sbjct: 356 NPGSLENLTVSVVVNG------------NGFGTMTIDDIRNLAGNAAGIAQADRAEKITA 403 Query: 409 TSMDFLENQLFNSGTVQVSF-MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + F + V + + + +I AL + LL+ L + R+ + Sbjct: 404 VAAPFYTIDVPKQPDEPVETGANGILVNQWILIAALAGVFLLLLIIILVVRHRRKKKALM 463 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 + + + + P + P++ + +D + R Sbjct: 464 ENMEDLEDSQEDVPIIPEFT-----KEPDEEREILVPEEDRGAELRES------------ 506 Query: 528 DLRLLHMIEINEERFAKILRKWA 550 + E N E A++L+ W Sbjct: 507 ---VREFAEQNPEISAQLLKTWL 526 >gi|46906964|ref|YP_013353.1| flagellar MS-ring protein [Listeria monocytogenes serotype 4b str. F2365] gi|46880230|gb|AAT03530.1| flagellar M-ring protein FliF [Listeria monocytogenes serotype 4b str. F2365] Length = 550 Score = 217 bits (554), Expect = 3e-54, Method: Composition-based stats. Identities = 100/550 (18%), Positives = 213/550 (38%), Gaps = 68/550 (12%) Query: 42 FVNSPHYDN-LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++N+P + LY L + +++ L++ +D+ + +G+ I V + R A Sbjct: 33 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA----LEGEIARTIQSISGIVAARVHI 156 G+P + + L +S G + +++ LE EI ++ + I +A V + Sbjct: 92 GIPYTGQDGNDILL--NSSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TIDSASVQL 147 Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDST 213 +P+ S F + + TA+V ++ N + I+ V+AAVPN+ DV ++D+ Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207 Query: 214 GKLLTANEM----ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 +++ + + + I AI ++ +I L++ +DNFR +N D Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVSVNFD 267 Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 + Y D KV + + S D + + ES ++P+ +++ + Sbjct: 268 EIKQNTEHYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTY-T 326 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 ++K E +NYE+++ L + ++ V V++ L + +AE Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQNALNKNGV----------DMAEF 375 Query: 389 NKIVSAATGINS-----------------------RRGDTITITSMDFLENQLFNSGTVQ 425 K + + G+ + GD +TI + FL+N Sbjct: 376 TKAIGVSAGLTPNMTTEEAGADGEAAAAPTFEGTFQNGD-VTIMPIQFLDNPTPAEEDTT 434 Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485 + +L+F + + + L+R +++A + E P Sbjct: 435 EKAAPASKAWIWWLAGSLLFAIIAAGIIAYIIF-LKRKEQLEEALEPEEKD----YIPAE 489 Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545 + + P+ N D+ + L++R + +L M + + R A + Sbjct: 490 EAIINPEEHPDFNFQTDAFD----LSEPELKAR-----KESLKNKLGEMAKEDPGRAAAV 540 Query: 546 LRKWARSEIE 555 ++KW E Sbjct: 541 IQKWLNERQE 550 >gi|226223344|ref|YP_002757451.1| flagellar basal-body M-ring protein FliF [Listeria monocytogenes Clip81459] gi|225875806|emb|CAS04509.1| Putative flagellar basal-body M-ring protein FliF [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 550 Score = 217 bits (553), Expect = 4e-54, Method: Composition-based stats. Identities = 100/550 (18%), Positives = 213/550 (38%), Gaps = 68/550 (12%) Query: 42 FVNSPHYDN-LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++N+P + LY L + +++ L++ +D+ + +G+ I V + R A Sbjct: 33 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA----LEGEIARTIQSISGIVAARVHI 156 G+P + + L +S G + +++ LE EI ++ + I +A V + Sbjct: 92 GIPYTGQDGNDILL--NSSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TIDSASVQL 147 Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDST 213 +P+ S F + + TA+V ++ N + I+ V+AAVPN+ DV ++D+ Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207 Query: 214 GKLLTANEM----ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 +++ + + + I AI ++ +I L++ +DNFR +N D Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVSVNFD 267 Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 + Y D KV + + S D + + ES ++P+ +++ + Sbjct: 268 EIKQNTEHYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTY-T 326 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 ++K E +NYE+++ L + ++ V V++ L + +AE Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQNALNKNGV----------DMAEF 375 Query: 389 NKIVSAATGINS-----------------------RRGDTITITSMDFLENQLFNSGTVQ 425 K + + G+ + GD +TI + FL+N Sbjct: 376 TKAIGVSAGLTPNMTTEEAGADGEAAAAPTFEGTFQNGD-VTIMPIQFLDNATPAEEDTT 434 Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485 + +L+F + + + L+R +++A + E P Sbjct: 435 EKAAPASKAWIWWLAGSLLFAIIAAGIIAYIIF-LKRKEQLEEALEPEEKD----YIPAE 489 Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545 + + P+ N D+ + L++R + +L M + + R A + Sbjct: 490 EAIINPEEHPDFNFQTDAFD----LSEPELKAR-----KESLKNKLGEMAKEDPGRAAAV 540 Query: 546 LRKWARSEIE 555 ++KW E Sbjct: 541 IQKWLNERQE 550 >gi|47091676|ref|ZP_00229472.1| flagellar M-ring protein FliF [Listeria monocytogenes str. 4b H7858] gi|254824007|ref|ZP_05229008.1| flagellar M-ring protein FliF [Listeria monocytogenes FSL J1-194] gi|254932007|ref|ZP_05265366.1| flagellar M-ring protein FliF [Listeria monocytogenes HPB2262] gi|255521223|ref|ZP_05388460.1| flagellar MS-ring protein [Listeria monocytogenes FSL J1-175] gi|300764526|ref|ZP_07074519.1| flagellar M-ring protein FliF [Listeria monocytogenes FSL N1-017] gi|47019995|gb|EAL10732.1| flagellar M-ring protein FliF [Listeria monocytogenes str. 4b H7858] gi|293583558|gb|EFF95590.1| flagellar M-ring protein FliF [Listeria monocytogenes HPB2262] gi|293593234|gb|EFG00995.1| flagellar M-ring protein FliF [Listeria monocytogenes FSL J1-194] gi|300514880|gb|EFK41934.1| flagellar M-ring protein FliF [Listeria monocytogenes FSL N1-017] gi|328475674|gb|EGF46423.1| flagellar MS-ring protein [Listeria monocytogenes 220] gi|332311137|gb|EGJ24232.1| Flagellar M-ring protein FliF [Listeria monocytogenes str. Scott A] Length = 550 Score = 217 bits (553), Expect = 4e-54, Method: Composition-based stats. Identities = 100/550 (18%), Positives = 213/550 (38%), Gaps = 68/550 (12%) Query: 42 FVNSPHYDN-LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++N+P + LY L + +++ L++ +D+ + +G+ I V + R A Sbjct: 33 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA----LEGEIARTIQSISGIVAARVHI 156 G+P + + L +S G + +++ LE EI ++ + I +A V + Sbjct: 92 GIPYTGQDGNDILL--NSSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TIDSASVQL 147 Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDST 213 +P+ S F + + TA+V ++ N + I+ V+AAVPN+ DV ++D+ Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207 Query: 214 GKLLTANEM----ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 +++ + + + I AI ++ +I L++ +DNFR +N D Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVSVNFD 267 Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 + Y D KV + + S D + + ES ++P+ +++ + Sbjct: 268 EIKQNTEHYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTY-T 326 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 ++K E +NYE+++ L + ++ V V++ L + +AE Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQNALNKNGV----------DMAEF 375 Query: 389 NKIVSAATGINS-----------------------RRGDTITITSMDFLENQLFNSGTVQ 425 K + + G+ + GD +TI + FL+N Sbjct: 376 TKAIGVSAGLTPNMTTEEAGADGEAAAAPTFEGTFQNGD-VTIMPIQFLDNATPAEKDTT 434 Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485 + +L+F + + + L+R +++A + E P Sbjct: 435 EKAAPASKAWIWWLAGSLLFAIIAAGIIAYIIF-LKRKEQLEEALEPEEKD----YIPAE 489 Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545 + + P+ N D+ + L++R + +L M + + R A + Sbjct: 490 EAIINPEEHPDFNFQTDAFD----LSEPELKAR-----KESLKNKLGEMAKEDPGRAAAV 540 Query: 546 LRKWARSEIE 555 ++KW E Sbjct: 541 IQKWLNERQE 550 >gi|116872102|ref|YP_848883.1| flagellar MS-ring protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740980|emb|CAK20100.1| flagellar M-ring protein FliF [Listeria welshimeri serovar 6b str. SLCC5334] Length = 550 Score = 217 bits (552), Expect = 4e-54, Method: Composition-based stats. Identities = 99/538 (18%), Positives = 208/538 (38%), Gaps = 44/538 (8%) Query: 42 FVNSPHYDN-LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++N+P + LY L + +++ L++ +D+ + +G+ I V + R A Sbjct: 33 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISG--IVAARVHIVM 158 G+P + + L +S G + +++ + + + I G + +A V + + Sbjct: 92 GIPYTGQDGNDILL--NSSLGASEEDKKMQEKVGTKVNLEKEIVQSYGITVDSASVQLTL 149 Query: 159 PDMGS-FRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 P+ S F + + TA+V ++ N + I+ V+AAVPN+ DV ++D+ Sbjct: 150 PESSSIFEEASQKGTAAVTLKTKNNQTLTKEQVLGIQRTVSAAVPNVASEDVAIIDTKNG 209 Query: 216 LLT----ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ 271 +++ ANE + + I AI ++ +I L++ +DNFR +N D Sbjct: 210 VISEADTANEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVAVNFDEI 269 Query: 272 QIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD 330 + Y D KV + + S D + T+ ES ++P+ ++ + ++ Sbjct: 270 KQNTERYPNDGKVRSNQKDTSTDTSKGSTNTTESGTASNADVPNYTEENGGDQNTY-TSE 328 Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSAD--------QGKID 382 K E +NYE+++ L + ++ V V++ L + A+ G Sbjct: 329 KSSETTNYELDSTIQEIEKHP-SLAKTNVVVWVDQQTLNKNGVDMAEFTKAIGVSAGLTP 387 Query: 383 SYLAEINKIVSAATGINS-----RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437 + E AT + + GD +TI + FL+NQ + Sbjct: 388 NMTTEEAGAGGEATATPTFEGTFQNGD-VTIMPIQFLDNQTPVEKDPAKTTEPASKAWIW 446 Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497 ++ +L+F + + + R+ + + P A+ P + Sbjct: 447 WLVGSLLFAIIAAGIIAYIIFLKRKEQLEEALE------AEEKDFIPAEEAIID---PEE 497 Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + L++R + +L M + + R A +++KW E Sbjct: 498 HPDFHFQTNAFDLSEPELKAR-----KESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 550 >gi|313610108|gb|EFR85433.1| flagellar M-ring protein FliF [Listeria monocytogenes FSL F2-208] Length = 550 Score = 217 bits (552), Expect = 5e-54, Method: Composition-based stats. Identities = 100/550 (18%), Positives = 213/550 (38%), Gaps = 68/550 (12%) Query: 42 FVNSPHYDN-LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++N+P + LY L + +++ L++ +D+ + +G+ I V + R A Sbjct: 33 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA----LEGEIARTIQSISGIVAARVHI 156 G+P + + L +S G + +++ LE EI ++ + I +A V + Sbjct: 92 GIPYTGQDGNDILL--NSSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TIDSASVQL 147 Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDST 213 +P+ S F + + TA+V ++ N + I+ V+AAVPN+ DV ++D+ Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207 Query: 214 GKLLTANEM----ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 +++ + + + I AI ++ +I L++ +DNFR +N D Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVTVNFD 267 Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 + Y D KV + + S D + + ES ++P+ +++ + Sbjct: 268 EIKQNTEHYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTY-T 326 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 ++K E +NYE+++ L + ++ V V++ L + +AE Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQNALNKNGV----------DMAEF 375 Query: 389 NKIVSAATGINS-----------------------RRGDTITITSMDFLENQLFNSGTVQ 425 K + + G+ + GD +TI + FL+N Sbjct: 376 TKAIGVSAGLTPNMTTEEAGADGEAAAAPTFEGTFQNGD-VTIMPIQFLDNATPAEKDTT 434 Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485 + +L+F + + + L+R +++A + E P Sbjct: 435 EKAAPASKAWIWWLAGSLLFAIIAAGIIAYIIF-LKRKEQLEEALEPEEKD----YIPAE 489 Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545 + + P+ N D+ + L++R + +L M + + R A + Sbjct: 490 EAIINPEEHPDFNFQTDAFD----LTEPELKAR-----KESLKNKLGEMAKEDPGRAAAV 540 Query: 546 LRKWARSEIE 555 ++KW E Sbjct: 541 IQKWLNERQE 550 >gi|328467278|gb|EGF38358.1| flagellar MS-ring protein [Listeria monocytogenes 1816] Length = 544 Score = 217 bits (552), Expect = 5e-54, Method: Composition-based stats. Identities = 100/550 (18%), Positives = 213/550 (38%), Gaps = 68/550 (12%) Query: 42 FVNSPHYDN-LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++N+P + LY L + +++ L++ +D+ + +G+ I V + R A Sbjct: 27 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 85 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA----LEGEIARTIQSISGIVAARVHI 156 G+P + + L +S G + +++ LE EI ++ + I +A V + Sbjct: 86 GIPYTGQDGNDILL--NSSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TIDSASVQL 141 Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDST 213 +P+ S F + + TA+V ++ N + I+ V+AAVPN+ DV ++D+ Sbjct: 142 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 201 Query: 214 GKLLTANEM----ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 +++ + + + I AI ++ +I L++ +DNFR +N D Sbjct: 202 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVSVNFD 261 Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 + Y D KV + + S D + + ES ++P+ +++ + Sbjct: 262 EIKQNTEHYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTY-T 320 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 ++K E +NYE+++ L + ++ V V++ L + +AE Sbjct: 321 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQNALNKNGV----------DMAEF 369 Query: 389 NKIVSAATGINS-----------------------RRGDTITITSMDFLENQLFNSGTVQ 425 K + + G+ + GD +TI + FL+N Sbjct: 370 TKAIGVSAGLTPNMTTEEAGADGEAAAAPTFEGTFQNGD-VTIMPIQFLDNATPAEKDTT 428 Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485 + +L+F + + + L+R +++A + E P Sbjct: 429 EKAAPASKAWIWWLAGSLLFAIIAAGIIAYIIF-LKRKEQLEEALEPEEKD----YIPAE 483 Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545 + + P+ N D+ + L++R + +L M + + R A + Sbjct: 484 EAIINPEEHPDFNFQTDAFD----LSEPELKAR-----KESLKNKLGEMAKEDPGRAAAV 534 Query: 546 LRKWARSEIE 555 ++KW E Sbjct: 535 IQKWLNERQE 544 >gi|254993621|ref|ZP_05275811.1| flagellar MS-ring protein [Listeria monocytogenes FSL J2-064] Length = 544 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 99/544 (18%), Positives = 212/544 (38%), Gaps = 68/544 (12%) Query: 42 FVNSPHYDN-LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++N+P + LY L + +++ L++ +D+ + +G+ I V + R A Sbjct: 33 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA----LEGEIARTIQSISGIVAARVHI 156 G+P + + L +S G + +++ LE EI ++ + I +A V + Sbjct: 92 GIPYTGQDGNDILL--NSSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TIDSASVQL 147 Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDST 213 +P+ S F + + TA+V ++ N + I+ V+AAVPN+ DV ++D+ Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207 Query: 214 GKLLTANEM----ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 +++ + + + I AI ++ +I L++ +DNFR +N D Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVSVNFD 267 Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 + Y D KV + + S D + + ES ++P+ +++ + Sbjct: 268 EIKQNTEHYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTY-T 326 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 ++K E +NYE+++ L + ++ V V++ L + +AE Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQNALNKNGV----------DMAEF 375 Query: 389 NKIVSAATGINS-----------------------RRGDTITITSMDFLENQLFNSGTVQ 425 K + + G+ + GD +TI + FL+N Sbjct: 376 TKAIGVSAGLTPNMTTEEAGADGEAAAAPTFEGTFQNGD-VTIMPIQFLDNATPAEKDTT 434 Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485 + +L+F + + + L+R +++A + E P Sbjct: 435 EKAAPASKAWIWWLAGSLLFAIIAAGIIAYIIF-LKRKEQLEEALEPEEKD----YIPAE 489 Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545 + + P+ N D+ + L++R + +L M + + R A + Sbjct: 490 EAIINPEEHPDFNFQTDAFD----LSEPELKAR-----KESLKNKLGEMAKEDPGRAAAV 540 Query: 546 LRKW 549 ++KW Sbjct: 541 IQKW 544 >gi|255594469|ref|XP_002536098.1| Flagellar M-ring protein, putative [Ricinus communis] gi|223520885|gb|EEF26286.1| Flagellar M-ring protein, putative [Ricinus communis] Length = 263 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 66/264 (25%), Positives = 129/264 (48%), Gaps = 7/264 (2%) Query: 26 ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISV 85 V+ + I + + + Y ++ E + + L ++ +RI + + V Sbjct: 1 MLVLAIGITAAVMLYMWNDQAGYKPVFGAHEKVAASDMMSVLDAEHVPYRIHPDSGQVMV 60 Query: 86 PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145 P+ +GK R+ LAA+G+ ++ +G EL DK + G++ F+Q++ R LEGE+A++I + Sbjct: 61 PTGQLGKVRMLLAAKGV-TAQLPAGLELMDKNDPLGVSQFVQDVRFRRGLEGELAQSILT 119 Query: 146 ISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNL 202 + I +ARVH+ + SF G + +ASV++ + AI ++V+ +V L Sbjct: 120 LDAIASARVHLAIAKSSSFVANDGDKSSASVVVAVKPGRTLSNEQIAAIVNMVSGSVAGL 179 Query: 203 DMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 V+++D G L++ + + + + Q E+ N+ L LG DNF+ Sbjct: 180 APARVSLVDQNGNYLSSRVDLTEGFDGAAQGDAAAKRYQDEVRTNVAGLLGPVLGADNFK 239 Query: 260 SAVVAELNMDTQQIREIVYDPDSK 283 +V A+++ D + + Y D K Sbjct: 240 VSVTADVDNDKVEETQEKYGADPK 263 >gi|315281378|ref|ZP_07870015.1| flagellar M-ring protein FliF [Listeria marthii FSL S4-120] gi|313614975|gb|EFR88482.1| flagellar M-ring protein FliF [Listeria marthii FSL S4-120] Length = 550 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 100/550 (18%), Positives = 211/550 (38%), Gaps = 68/550 (12%) Query: 42 FVNSPHYDN-LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++N+P + LY L + +++ L++ +D+ + +G+ I V + R A Sbjct: 33 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA----LEGEIARTIQSISGIVAARVHI 156 G+P + + L +S G + +++ LE EI ++ + I +A V + Sbjct: 92 GIPYTGQDGNDILL--NSSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TIDSASVQL 147 Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDST 213 +P+ S F + + TA+V ++ N + I+ V+AAVPN+ DV ++D+ Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207 Query: 214 GKLLTANEM----ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 +++ + + + I AI ++ +I L++ +DNFR +N D Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVTVNFD 267 Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 + Y D KV + + S D + T+ ES ++P+ +++ + Sbjct: 268 EIKQNTEHYPSDGKVRSNQKDTSTDTSKGSTNTTESGTASNADVPNYTEQNGDDTNTY-T 326 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 ++K E +NYE+++ L + ++ V V++ L + +AE Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQNALNKNGV----------DMAEF 375 Query: 389 NKIVSAATGINS-----------------------RRGDTITITSMDFLENQLFNSGTVQ 425 K + + G+ + GD +TI + FL+NQ Sbjct: 376 TKAIGVSAGLTPNMRTEEAGADGEAAAAPTFEGTFQNGD-VTIMPIQFLDNQTPVEKDTT 434 Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485 + +L+F + + + R+ + + E P Sbjct: 435 EKAAPASKAWIWWLAGSLLFAIIAAGIIAYIIFLKRKEQLEEALEAEEKD-----YIPAE 489 Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545 + + P+ N D+ + L++R + +L M + + R A + Sbjct: 490 EAIINPEEHPDFNFQTDAFD----LSEPELKAR-----KESLKNKLGEMAKEDPGRAAAV 540 Query: 546 LRKWARSEIE 555 ++KW E Sbjct: 541 IQKWLNERQE 550 >gi|119503663|ref|ZP_01625746.1| flagellar M-ring protein [marine gamma proteobacterium HTCC2080] gi|119460725|gb|EAW41817.1| flagellar M-ring protein [marine gamma proteobacterium HTCC2080] Length = 243 Score = 214 bits (546), Expect = 3e-53, Method: Composition-based stats. Identities = 66/240 (27%), Positives = 113/240 (47%), Gaps = 6/240 (2%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + +L + TR + L + + L + + P + LY + +D Sbjct: 4 NPILNRVSGFAAQPVTRQMALLIGMAASVALGVGVIQWAMKPDFQPLYGAMSPADNATAV 63 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L I + ++ +SVPS + +AR+ LA++G P G+E + GL+S Sbjct: 64 SLLQANGIPYTMAGGSGLLSVPSDQIPQARMALASEGFPRGGG-VGFESLYQEQEMGLSS 122 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI--NP 182 FM++ RA+E E+ARTI ++ + ARVH+ +F + G P+ASVM+ Sbjct: 123 FMEQARYNRAVEAELARTISAMDSVKGARVHVAASKQSAFIRRGQEPSASVMVSLYPGRG 182 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQAIQH 239 + I HLVA+++P L V+V+D GKLL++ + E N G + I Q ++ Sbjct: 183 LSERQLAGIVHLVASSIPELQASKVSVVDQAGKLLSSQDGEDNDFGYTSEQFRIAQQLED 242 >gi|320535381|ref|ZP_08035495.1| flagellar M-ring protein FliF [Treponema phagedenis F0421] gi|320147783|gb|EFW39285.1| flagellar M-ring protein FliF [Treponema phagedenis F0421] Length = 571 Score = 214 bits (545), Expect = 3e-53, Method: Composition-based stats. Identities = 107/589 (18%), Positives = 217/589 (36%), Gaps = 73/589 (12%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLY-VKLEVSDVNR-I 63 +L + + + + + L+LA VIL I+ + ++P L V + I Sbjct: 15 KLKELWGKWSVVQK---LVLAGVILAAIIGMAVLFTWSSAPTTVPLIDVPISDEAAREKI 71 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGK-ARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + L+E NI +S G ISVP + R L + L + + + +FD V + Sbjct: 72 ILRLNEENISASVSATG-LISVPDEKTARRMRSILIREDLIPKNVDP-WAIFD-VERWTR 128 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T F +++ RA+ + I+++ + A V I +P+ F+ TASV++ Sbjct: 129 TDFERKVDVRRAINKMVTDHIKALDDVDDANVIINVPEDTLFKADQKPITASVVLFTKPG 188 Query: 183 SV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-----ILGKSLSI 233 S K + I+ L+ AVP L ++T+ DS K+L E ++ ++ K + Sbjct: 189 SDIETDRKKIQGIQKLLKLAVPGLLDENITIADSNAKILNDFEGMKDMDRLTLIEKQQKM 248 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRS-AVVAELNMDTQQIREIVYDP------------ 280 + ++ + E+ I L G D R + +++M + + Y P Sbjct: 249 IAKLETQYEIKILTLLQKTYGKDRVRDLNIKIDMDMSEKTAQTTKYLPTEIRPDNPETPW 308 Query: 281 -DSKVERSIRLSKDA----QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ 335 DS++ SI + + PE VE P + K ++ Sbjct: 309 DDSEIVPSITAISETATTTWQGTGLTPEGPAGVEGQTPPAYKDMTNQLGMSNQSIVKRQE 368 Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS-----------ADQGKIDSY 384 I+ I+ L R +++V ++ + + Sbjct: 369 ---AISKSEISEVISPV-LGRRTVSVNIDGEWRKKRDDKGNLVISEGRIEREYIPISPEE 424 Query: 385 LAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALV 444 L E + V A G ++ R D+I++ ++ F F + + A N ++ Sbjct: 425 LQEATRAVQNAIGYDANRKDSISVLNIRFDRVAEFEAEDA--------AYFRAQQRNMII 476 Query: 445 FLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSS 504 + L + L R+ + + + + + L ++ +NI + S Sbjct: 477 LISLGGFAILLLIFILYRIISRELERLRRLREEDELRKAQMAREAALRAAEMNNIDVAMS 536 Query: 505 NQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ + R+ + +++M + E A ++R W E Sbjct: 537 VEE--------RKRLELQEN------VINMAREHPEDVALLIRTWLMEE 571 >gi|47566129|ref|ZP_00237167.1| flagellar M-ring protein, putative [Bacillus cereus G9241] gi|47557046|gb|EAL15376.1| flagellar M-ring protein, putative [Bacillus cereus G9241] Length = 515 Score = 212 bits (541), Expect = 9e-53, Method: Composition-based stats. Identities = 99/565 (17%), Positives = 217/565 (38%), Gaps = 71/565 (12%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 +++L F+ SL L++ + +L + A +F Y +Y L +D I Sbjct: 1 MEKLKNVFQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + LS+ +D++++ +G SI V + R + GLP +S + L + +S G + Sbjct: 56 TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112 Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178 +++ + + LE +I R + + A V I +P+ F + A+ TA++ + Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169 Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSL 231 I+ +++AAVP + +V+V+DS +++ E + K + Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + I+ +++ +I+ L + ++ +N D + Y D V RS + Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 ++ TS + +Q ++ +VP + N + + ++ YEI+ Sbjct: 289 EE-----TSTAQEGADTKQGAGITANGEVPNYGTNNNKNGNKIEN-YEIDKTVETIKKHP 342 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------RGDT 405 +L + ++ V V+ L K + + + A G+ + G Sbjct: 343 -ELTKTNVVVWVDNDTLV----------KRRIDMTTFKEAIGTAAGLQADPNGNFTNG-Q 390 Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465 + + ++ F + + + S ++ I A + +G LV FL L Sbjct: 391 VNVVTVQFDQPKEEKPKEPEESGINW---WLFGGIPAGLLAIGG-LVWFL-------LAR 439 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 K+ E + + +S+ + +P + I + + L ++ Sbjct: 440 RKRKKEEEEYEEYLAEEEVAASSESIMEIPEEKIVPEPKPEPEEPKEPTLDEQVQDATK- 498 Query: 526 QSDLRLLHMIEINEERFAKILRKWA 550 + E AK+++KW Sbjct: 499 -----------EHVEGTAKVIKKWL 512 >gi|91791422|ref|YP_561073.1| secretory protein YscJ/FliF [Shewanella denitrificans OS217] gi|91713424|gb|ABE53350.1| secretory protein YscJ/FliF [Shewanella denitrificans OS217] Length = 439 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 96/448 (21%), Positives = 192/448 (42%), Gaps = 52/448 (11%) Query: 20 TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN 79 T+ + + ++L + ++V L+ L + + + L + I +++ Sbjct: 8 TKKMRFFIAGISLMLLTLITLWWVIQDSKQVLFSGLSQATLTEYTAKLEASGIGYQVE-- 65 Query: 80 GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEI 139 G+SI V SS +AR+ +A + S++ +G+EL++ + G T Q +RAL+GEI Sbjct: 66 GTSIFVASSDSNQARV-VAMEDSIQSNNVTGFELYE-NSDLGATERAQHANYLRALQGEI 123 Query: 140 ARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEAIRHLVAA 197 RT+ + I ARVH+ +P F ASV + ++ ++ EAI+ LV + Sbjct: 124 ERTLTGFNYIKKARVHLTLPQKRLFMSQNQLTKASVTLFTVDHYQPRTIDIEAIKQLVVS 183 Query: 198 AVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDN 257 AV +L + V V+D G+ E + ++ +L++ ++ + +E + + L A+ + Sbjct: 184 AVEDLTIDQVVVIDGAGQ-WGVFEPQGDLSSPNLALRRSTESYLEQKVLQVLVAYFSASS 242 Query: 258 FRSAVVAELNMDTQQIREIVY---DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPH 314 +AV ELN DT +I E D + S ++ S+ ++P S Sbjct: 243 ISAAVAVELNTDTVKIHETKAIKGDGSQGLISSETKFEETHLSDDNKPGS---------- 292 Query: 315 VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR 374 T + E Y + T ++ RL+ AV +N E+ Sbjct: 293 -------------KTLRNEVT--YAHGALTQETEQAPGQILRLTAAVSINAEVAPELQ-- 335 Query: 375 SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSR 434 A+I++++ G +S+R D+I+++ F ++ ++ ++ + Sbjct: 336 -----------AQISELIKNTIGFDSQRDDSISVSF--FYLPKVEPLPVTPMAVEPVVVK 382 Query: 435 HFATVINA--LVFLVGTLLVTFLGLHAL 460 + L+ +GTL G+ L Sbjct: 383 TVESNTWWPFLLIGLGTLFSLSTGMFYL 410 >gi|227873553|ref|ZP_03991796.1| flagellar M-ring protein FliF [Oribacterium sinus F0268] gi|227840599|gb|EEJ50986.1| flagellar M-ring protein FliF [Oribacterium sinus F0268] Length = 557 Score = 211 bits (536), Expect = 3e-52, Method: Composition-based stats. Identities = 103/573 (17%), Positives = 208/573 (36%), Gaps = 49/573 (8%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + +L + +++ ++ + + I+A + +V I + + Y L+ L + +I Sbjct: 1 MQKLKEMWQNLSAKSKKLLGIIAGITVVVIAVAVFLLARGQKTEYQTLFSSLSQGEAQQI 60 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L E N+ + ++ VPS V R L ++G P S Y+++ + T Sbjct: 61 VSLLQEQNVPYLYDGKSGALKVPSESVDTLRAQLLSKGYPKSGFA--YDMYIGNSGLMTT 118 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARP---TASVMIRAI 180 ++ + L+ + TI+ G+ A+V I ++ P +ASV++ Sbjct: 119 ESDKKQYTLYDLQDRLGATIRLFDGVRDAKVTIAEGTDQTYAIEDENPVQASASVVVTME 178 Query: 181 NPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ--- 235 K+AEAI++L+A +V ++ +V+V D+ A + + G S+ Sbjct: 179 EGQSLSEKNAEAIKNLIARSVKGMNFTNVSVFDAGTMEEVAADAGDSASGSGTSMANLTT 238 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS-------- 287 +++ I NI + L G +N +V LNM Y K E + Sbjct: 239 TVENNIANNIKRVLGKIYGGENLAVSVKGTLNMAKLIQENTQYTVPEKTEATDKRGLLSN 298 Query: 288 IRLSKDAQRSETSQPESAVTVEQNM-PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346 ++ + + + N + + +N + N Sbjct: 299 EEVAGENAGNSGENAAGVAGADANADTPRYTTQNGTATTTDNYSNSSATREWLYNVLKEQ 358 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI-NSRRGDT 405 LE S+A+V+N D I +++ +V+ A GI D Sbjct: 359 KEIAPGVLEDASVAIVIN-----------TDDNSIPE--SDLINLVADAAGIKRDEAADK 405 Query: 406 ITIT-SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 ITI S++ Q L F L L+G + FL + L Sbjct: 406 ITILRSLNKTAVQQTTEEKKPAEEPKTLLNQFP-----LWALIGAAVSAFLLILI---LL 457 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNI-ALDSSNQDIFSHSRNLQSRINSYV 523 + + + K + ++A + P D I ++ ++D + + + Sbjct: 458 ILILRGRKKKKLKKLAQEEMENAAALSVEQPTDEITPVEEVDEDELTAEGKMAHGMKLKK 517 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIED 556 S + + N + AK+++ W R E ++ Sbjct: 518 S------IGEFTDQNPQVVAKLIQSWMREEEQN 544 >gi|330946240|gb|EGH47422.1| flagellar MS-ring protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 227 Score = 210 bits (535), Expect = 4e-52, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 109/228 (47%), Gaps = 5/228 (2%) Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 ARI LA G+ S +N G+E+ DK G + FM+ R LEGE+ARTI +++ + A Sbjct: 1 ARIQLAQAGVVQSDANIGFEILDKDQGLGTSQFMEATRYRRGLEGELARTISALNNVKGA 60 Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVL 210 RVH+ +P F + +P+ASV++ + AI +LVA +VP L +TV+ Sbjct: 61 RVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEPSQVLAIINLVATSVPELSKSQITVV 120 Query: 211 DSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM 268 D G LL+ A E + GK + ++ + + L LG D +++ V A ++ Sbjct: 121 DQKGTLLSDQAENSELTMAGKQFDYSRRMEGMLTQRVQNILQPILGNDRYKAEVSAVVDF 180 Query: 269 DTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVS 316 + ++PD RS + + QRS +S N P Sbjct: 181 SAVESTAESFNPDQPALRSEQSVNE-QRSSSSSSGGVPGALSNQPPGP 227 >gi|317133489|ref|YP_004092803.1| flagellar M-ring protein FliF [Ethanoligenens harbinense YUAN-3] gi|315471468|gb|ADU28072.1| flagellar M-ring protein FliF [Ethanoligenens harbinense YUAN-3] Length = 528 Score = 209 bits (532), Expect = 9e-52, Method: Composition-based stats. Identities = 90/520 (17%), Positives = 180/520 (34%), Gaps = 43/520 (8%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + Y+ +Y L ++ +I L I +++ +G+SI V S+ +AR+ LA Sbjct: 43 MLLTQTQYELIYSGLSDAESGQIVADLQTRGIKYKL--DGNSIYVDKSVADQARMELAVD 100 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 G P ++ N Y +++ N++ +T ++ + ++ + TIQ+I G+ A V I + Sbjct: 101 GYPQTTLN--YSVYESGNNWAMTDKDKQQLALYQIQDRLQSTIQTIPGVKNAIVTITQGN 158 Query: 161 MGSFRKIGAR--PTASV--MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 ++ + PTASV + K I ++V+ +V L +VTV DS G Sbjct: 159 DDTYVLESDKVSPTASVKLTLTPGTTLTQKQVTGIVNIVSHSVSGLSADNVTVADSDGNT 218 Query: 217 L-TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 L + L++ ++ EI + L G N + + A L+ T Sbjct: 219 LNNTGDDLSGATSDQLALRVQVESEIRQKVLSVLGPVYGAANVQVSPAAILDFTTTTTNT 278 Query: 276 IVY---DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332 Y D S+ S + V V P ++ Sbjct: 279 TTYSGPDNGQGFPSSVSSSITVSGGTGTASGGTVGVNGAQPAYPTSGSQTSSLSGTVTQQ 338 Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV 392 + Y N ++ L+I +++N SA+Q ++ + V Sbjct: 339 NTNTTYLYNQVQQQVQDKGGSIKNLTIGIMLN----------SANQAIAGLDPTQVQQFV 388 Query: 393 SAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452 + A G + + + M F + +SG + T++ +++ Sbjct: 389 AYAVGTAPQ---NVNVQLMRFASSSAVSSGGKGSASGTSGLGSPTTLLTIAGIGAAAVVL 445 Query: 453 TFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS 512 L L L R A + E ++ + + Sbjct: 446 ILLLLFFLLRGRKRKKALQEEAEAQAEQAQAAQPVKPGPPMSAE---------------- 489 Query: 513 RNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 L +++ ++ + E A++LR W + Sbjct: 490 --LAQKLDEMPDNPVKKQIEDFTDSKPELVAQLLRNWLKD 527 >gi|225375317|ref|ZP_03752538.1| hypothetical protein ROSEINA2194_00942 [Roseburia inulinivorans DSM 16841] gi|225212806|gb|EEG95160.1| hypothetical protein ROSEINA2194_00942 [Roseburia inulinivorans DSM 16841] Length = 536 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 97/578 (16%), Positives = 207/578 (35%), Gaps = 74/578 (12%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 +LD++L+++K + +T ++ + +V+LV + + A V+ P L ++ Sbjct: 9 KVLDRILEWWKKFNTKQKTLLISIVAVVLVALAILAAV---VSKPKMVTLVTCATTAESG 65 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 ++ L NI + +S +G + V A I L +P+S + ++FD F Sbjct: 66 QVKNILDSENISYELSADGLAFQVNEKDYANASIVLGTNDIPTSGTK-LSDVFD--GGFS 122 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG-SFRKIGARPTASVMIRAI 180 T + LE A ++++S + AA V + +PD + G + + ++ Sbjct: 123 STEADKTKKYKLYLEEYYAEKLETLSNVDAAAVTLDLPDEDGTILSKGEQAYVTAILTLN 182 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQAI 237 + A + +A V N D +V +LD++ +L + + + ++ G LS+ Sbjct: 183 GTMDDEQAAGLAKYLATNVGNDDTSNVLILDNSSNVLFSGQDDTSVTGNANNQLSLKTKA 242 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPDSKVERSIRLSKDAQR 296 +++++ + L DN + +N D T + Y PD + + + + Sbjct: 243 ENQVKGQVKDVLVGSSLFDNVEVGLNLAMNFDQTTESTHEYYAPDGQTNGMVGSKSEYES 302 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE- 355 + + + N V ++ E +NY+ N K TT + Sbjct: 303 NAVGGAAATPGTDSN--DDDTTYVMEDNDYTSSSVSETNTNYQNNEKITTTTPAVGTVNY 360 Query: 356 ---RLSIAVVVNKGRLTEVLGRSA---------------DQGKIDSYLAEINKIVSAATG 397 +S AV N E R++ + ++ ++S ATG Sbjct: 361 DGSSIS-AVATNYVIYDEDTLRASGTLGDMTFDEYVVANSEPVKAEVDQDLYTLISNATG 419 Query: 398 INSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457 + ++++ + T+ + L ++ L+ LG Sbjct: 420 --------VPVSNITII--------AYDQPMFQYSKGSTRTISDYLQIILAVLIFALLGY 463 Query: 458 HALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS 517 R S+ + P ++++S + S + Sbjct: 464 VVFR------------------------STRKEKAVEPEPELSVESLLEST-KESADTLQ 498 Query: 518 RINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 I ++ + + +E N E A +LR W E E Sbjct: 499 DIGFNEKSETRVLIEKFVEENPEAAASLLRNWLNEEWE 536 >gi|303240288|ref|ZP_07326807.1| flagellar M-ring protein FliF [Acetivibrio cellulolyticus CD2] gi|302592198|gb|EFL61927.1| flagellar M-ring protein FliF [Acetivibrio cellulolyticus CD2] Length = 524 Score = 207 bits (527), Expect = 4e-51, Method: Composition-based stats. Identities = 87/560 (15%), Positives = 188/560 (33%), Gaps = 52/560 (9%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + ++ + +K+ + RI ++++++++ I + + + Y L + D Sbjct: 7 KLQQRITELWKNLDKSQKGRIYVISAILVIAITVSIVM---LTRTTYVPLVTIDDTKDAA 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L + I+++ G+ I V S KA LA+ G +SS +E + S Sbjct: 64 EIEKVLQDKGINYK-PGEGNKILVDSKEKNKAEFALASSGF--TSSGMNFEDAWNLVSIT 120 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI--GARPTASVMIRA 179 T ++ + + ++ + A + + MP F + TA V I Sbjct: 121 STESDKKQLWENFKKNSLVAKLKMFDNVRDADIEVTMPKDSLFFDDTSSDKATAFVRIDP 180 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-NILGKSLSIVQAIQ 238 + + I +V+A++ LD DVTV+D+ +L+ + + + ++ Sbjct: 181 KGEITSEQVKGIVSVVSASIDGLDPKDVTVVDNNFNILSTDASDAIGDTSTQYKMKLKVK 240 Query: 239 HEIEMNINKALAA--FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS-KDAQ 295 E+E NI K L D V L D Q+ + + ++ ++ S + + Sbjct: 241 QELEKNI-KVLYPNKSSSYDYISVVVNPVLEFDKQKTTKKEVGKPNDIDEAVVSSHTEKE 299 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL- 354 + N + + +K N + N + Sbjct: 300 ELVNGANGGVPGTDSNPGNGTTTYPIQAGDNSTYNKTTTDINRQFNETMTEVEKAQGDIN 359 Query: 355 -ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 ++ S+AV + G+ + D +LA+ +++S AT I ++ + Sbjct: 360 FDQSSVAVTLWYGQKV-----ADDSAITPEFLAQCQQVISGAT--------NIPVSKISI 406 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 + +L D + ++ Sbjct: 407 NKYKLAPEEVYTEPLSDKIQQYIEDY------------------------GYFALMLMLI 442 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 +G + P A G M + +A S Q I I+ + ++ Sbjct: 443 IGLLIAVIPRKKKEAAAVGEMLSPELATASGPQFIVPEDEEPVPEISYEEKSEVKKQIER 502 Query: 534 MIEINEERFAKILRKWARSE 553 ++ E A++LR W + Sbjct: 503 FVKEKPESVAQLLRNWLSDD 522 >gi|313905127|ref|ZP_07838496.1| flagellar M-ring protein FliF [Eubacterium cellulosolvens 6] gi|313470030|gb|EFR65363.1| flagellar M-ring protein FliF [Eubacterium cellulosolvens 6] Length = 563 Score = 206 bits (524), Expect = 8e-51, Method: Composition-based stats. Identities = 103/584 (17%), Positives = 215/584 (36%), Gaps = 59/584 (10%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M IL++L + ++ +++ R ++I+ + + + + + Y L+ L + Sbjct: 1 MKILNKLKETWQQLSAMARRLLIIVLVGAVAFVAIGIVLLNQKKTTEYTTLFTGLNQEES 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I + E + +I VP K R + ++G P S Y ++ + Sbjct: 61 REIVSMIQEEGKQYLYDAGSGTIQVPVEQADKLRAEILSKGYPQSGFT--YSMYVGNSGI 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-----------KIGA 169 T +E + L+ + TI+ G+ A+V I D + Sbjct: 119 MATESDKEQYTLYDLQDRLGATIRLFDGVRDAKVTIAQADDDGYVLDEDGDTKSNSDDDV 178 Query: 170 RPTASVMIRAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLD-STGKLLTANEMERNI 226 +ASV++ S K+A+AIR+LVA +V ++ +V+V D +T + + N + + Sbjct: 179 NASASVVVTMKRGSELTEKNADAIRNLVARSVRGINFTNVSVFDAATMQEIGGNADDESA 238 Query: 227 LGKSL-SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVE 285 +++ + + +++ I N+ K LA ++N AV +L+ T Y + + Sbjct: 239 NSEAVNELTKQVENNIAANVKKVLAKLYHMENVEVAVRGKLDTSTLLSENTQYTVPVQAD 298 Query: 286 RSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPR-SLENTDKKEEQSNYEINTKS 344 + + + S +D PR + EN +E S+++ +T Sbjct: 299 STDKEGLLDHEEDASAYTGPGAATAAGVAGTDANADTPRYTTENGANGDEYSSFDTSTSR 358 Query: 345 I--------ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT 396 + L+ ++AVV++ + +D ++ +V+ A Sbjct: 359 QWLYNTLKEQVQRNPGTLQDCTVAVVID-----------TEDTSVDE--NDLINLVADAA 405 Query: 397 GINSRRGD---TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVT 453 GI+ R D IT+ + + + + R +I A V Sbjct: 406 GIS--REDAPEKITVVRSAIPKATATPTPGPEDNSEAEQQRQQMIIIAAAV--------- 454 Query: 454 FLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR 513 A L I +G+ K +A A ++ Sbjct: 455 ----GAFLFLLLIILIIRGKKKKKKQRELEAQLAAEQEAAELAAAEAEAAAAAQSEKELS 510 Query: 514 NLQSRINSYVSKQSDLR--LLHMIEINEERFAKILRKWARSEIE 555 +S N +V++ +L+ + +E N + AK+++ W R E Sbjct: 511 EEESASNEHVARGQELKDNIGDFVEENPQVAAKLIQSWLREGDE 554 >gi|15639390|ref|NP_218839.1| flagellar MS-ring protein [Treponema pallidum subsp. pallidum str. Nichols] gi|189025632|ref|YP_001933404.1| flagellar MS-ring protein [Treponema pallidum subsp. pallidum SS14] gi|6016022|sp|O83414|FLIF_TREPA RecName: Full=Flagellar M-ring protein gi|3322682|gb|AAC65387.1| flagellar basal-body M ring protein (fliF) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018207|gb|ACD70825.1| flagellar basal-body M ring protein [Treponema pallidum subsp. pallidum SS14] gi|291059789|gb|ADD72524.1| flagellar M-ring protein FliF [Treponema pallidum subsp. pallidum str. Chicago] Length = 567 Score = 206 bits (524), Expect = 8e-51, Method: Composition-based stats. Identities = 104/589 (17%), Positives = 205/589 (34%), Gaps = 73/589 (12%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLY-VKLEVSDVNR-I 63 +L +K T + ++ +LA LV +M + + P L + V I Sbjct: 11 KLKTQWKKWTLVQKS---VLAGAALVSVMGVVVLLTWSAKPTLVPLIDTPITDETVREKI 67 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGK-ARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + L+E N+ +S G ISV + R L + L + + + +FD V + Sbjct: 68 ILRLNEENVRATVSSVG-LISVSDEKTARRMRSILIREDLIPKNVDP-WAIFD-VERWTR 124 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T F + + RA+ + I+++ I A V I +P+ F+ TASV+I Sbjct: 125 TDFERRVDVRRAINNTVTNHIKALDDIDDAHVVINVPEDALFQADQKPITASVVIFPKPS 184 Query: 183 SV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-----ILGKSLSI 233 S K E I+ L+ AVP L ++T++DS +L E ++ ++ K + Sbjct: 185 STIASERKKIEGIQKLLKLAVPGLKDENITIVDSDATVLNDFEGFKDADRLSLIEKQQKM 244 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRS-AVVAELNMDTQQIREIVYDP------------ 280 + ++ + E + L G D R + E+++ + + Y P Sbjct: 245 IAKLESQYEAKVLALLQKTYGKDRVRDLNIKIEMDLSEKTSQTTKYLPIEIRQDNPDTPW 304 Query: 281 -DSKVERSIRLSKD----AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ 335 DS+V S+ + + PE VE P + K+++ Sbjct: 305 DDSQVVPSVTSISETATTTWQGTGLNPEGPPGVEGQTPPAYKDMSNQVGLSNQSVVKKQE 364 Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG-----------RSADQGKIDSY 384 I+ I L R +++V ++ + Sbjct: 365 ---AISKSEINEVVSPV-LGRRTVSVNIDGEWRKKRDEHGRFIVKEGHIEREYIPISAEE 420 Query: 385 LAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALV 444 L E K V A G ++ R D++++ ++ F F+ + + +I + Sbjct: 421 LREATKAVQDAIGFDAGRKDSVSVLNIKFDRTSEFDREDEHY----LRVQQRNMIILYSL 476 Query: 445 FLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSS 504 V +L F+ + + ++ ++ A+ N+++ Sbjct: 477 ASVAIVLFIFMVYKVISK--EVERRRRLREEELLRQQQLMRERALWEAEQAGMNVSMSVE 534 Query: 505 NQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + N +L+M + E A ++R W E Sbjct: 535 ERKRLELQEN----------------VLNMAREHPEDVALLVRTWLMEE 567 >gi|84502563|ref|ZP_01000699.1| flagellar FliF M-ring protein [Oceanicola batsensis HTCC2597] gi|84389375|gb|EAQ02172.1| flagellar FliF M-ring protein [Oceanicola batsensis HTCC2597] Length = 238 Score = 205 bits (522), Expect = 2e-50, Method: Composition-based stats. Identities = 83/237 (35%), Positives = 137/237 (57%), Gaps = 3/237 (1%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + ++ +LG+ R++ L +V ++ V P Y LY L S+ +R+ A Sbjct: 1 MQALLENLKALGQGRLIALGVTGVVLVLATFFGVRAVLEPSYSTLYRDLTPSEASRMVGA 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L A ++ +GS +SVP + +AR+ LA QGL +G+E+FD+ + G+ SFM Sbjct: 61 LEGAGFAVQVDSSGSILSVPQEDLARARMELAGQGLV-GDGAAGWEIFDEASGLGMNSFM 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV-- 184 Q+I R+RALEGE+AR+IQ+I G+ AARVH+V+P+ +F + +P++SV+IR+ Sbjct: 120 QKINRLRALEGELARSIQTIDGVDAARVHLVLPEREAFSRERPQPSSSVIIRSRAGHQVN 179 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEI 241 + A+AIR LV++AVP + G VTVL + G+ + A E S+ +++ I Sbjct: 180 LRQAQAIRALVSSAVPEMSPGRVTVLTANGETILAEEGTDVAEVTQQSLKASVEDRI 236 >gi|116514986|ref|YP_802615.1| hypothetical protein BCc_043 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116256840|gb|ABJ90522.1| flagellar basal-body MS-ring and collar protein [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 489 Score = 203 bits (517), Expect = 6e-50, Method: Composition-based stats. Identities = 91/439 (20%), Positives = 164/439 (37%), Gaps = 58/439 (13%) Query: 1 MAILDQLLQFFKSGTSLG------RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVK 54 M + +L FF+ L +I + V L+ I+ ++ + HY LY Sbjct: 1 MNFIKKL--FFQIKKKLNYLFFCILKKIKYIFFVSLISIISIISIFLWSKKVHYVVLYNN 58 Query: 55 LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114 L D I L +I +R +++ ++ VP + + L N G+EL Sbjct: 59 LSQEDSKWIISRLKILHIPYRCNNSFKTLLVPEDKINILNLSLLKN-NNILKKNFGFELL 117 Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174 DK FG++ F + I R LEGE+++T++ I I ARVH+V F + P+AS Sbjct: 118 DKE-KFGISQFHEHINYHRGLEGELSKTLEQIFPIQCARVHLVCKKDTDFFENNQIPSAS 176 Query: 175 VMIRAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS 232 V+I Y+ AI L++ +VP+L ++ ++D G +L ++ + Sbjct: 177 VIITLFPNMHLTYEQINAIILLISGSVPDLSSDNIVLVDQFGNILNKYDLNHTKFFNNSQ 236 Query: 233 IVQ--AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR--EIVYDPDSKVERSI 288 + ++ I L L +F V +L D + Y+ + K++ S Sbjct: 237 YKKITILEEYYSQRIKDILLPILDSKDFVVQVTTKLKKDNHASTFSDKNYNVNQKIDNSF 296 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 E + +TV N N+ K S E+N Sbjct: 297 I---SPNFKELNIKNIKITVLINY------------KKNNSGKMVPLSKNELN------- 334 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 +E L +V+ + L I +V + ++ +GD I + Sbjct: 335 ----NIENLVKSVI----------------NLSKNKLNNIENLVKSVINLSKNKGDRINL 374 Query: 409 TSMDFLENQLFNSGTVQVS 427 + FL+ + + Sbjct: 375 INYMFLDTPSVIDASYSLK 393 >gi|328947994|ref|YP_004365331.1| flagellar M-ring protein FliF [Treponema succinifaciens DSM 2489] gi|328448318|gb|AEB14034.1| flagellar M-ring protein FliF [Treponema succinifaciens DSM 2489] Length = 568 Score = 201 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 105/592 (17%), Positives = 221/592 (37%), Gaps = 74/592 (12%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKL--EVSDVN 61 L+ + + + T+L + + + V + I+L + + P L+ + + Sbjct: 9 LETIKEKWAKWTTLQKAIVAAIIVVAIAVIVLMASM---SSRPSTVRLFNGPVNDEKERE 65 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGK-ARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L + N+ +S + + ISV +S + K R L A+G SS ++ Y LFD V + Sbjct: 66 LILSRLDQDNVKAYVSSD-NYISVENSDIAKKYRSRLIAEGYAPSSLDA-YSLFD-VTRW 122 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 T F ++ RA E + + ++S+ GI A V++V+PD F + +AS+++ A Sbjct: 123 SRTDFDDKVNWQRATETALKQQLESLDGIQRAEVNLVLPDEALFTENQNPTSASIVLYAK 182 Query: 181 NPSVYKS----AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG------KS 230 S + I++L+ A V L ++ + D + + K Sbjct: 183 GNSDVLTDKRKIRGIQNLIKACVEGLRDENIVINDGASNVQINDFEGMAESDRISNIEKQ 242 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRS-AVVAELNMDTQQIREIVY--------DP- 280 ++ + + KAL D R + ++NM ++ Y +P Sbjct: 243 RKLILKQETTYTGLVLKALKGTFSDDRVRVANIKIDMNMSERKTTSKEYTGITIRPDNPN 302 Query: 281 ----DSKVERSIRLSKD----AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332 DS++ S+ LS++ + PE VE P V + + + ++ Sbjct: 303 TPYDDSEIVNSLTLSEETVNKSFTGTGYNPEGPAGVEGQNPPVYSD---MSNVVGKSTEE 359 Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS-----------ADQGKI 381 + NY +N K+++ +++R++++V ++ + Sbjct: 360 GVKRNYALNEKNVSEITSP-QIDRITVSVNIDGQWRKVYDENNRPILENGHLKREYIPIT 418 Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441 L K+V A G N RGD++T+T++ F + ++++ L+R+ Sbjct: 419 PEQLVNTTKLVQDAVGYNKSRGDSVTVTNIPFDRTE--EQEKEDLAYIAQLNRNRT---- 472 Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501 + + I + + A AL Sbjct: 473 ------------IMFSLIGIAIILIAFIAFRIISREIERRRRLAEEARIRQQEEERQRAL 520 Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + Q + +++ R + + + + M + + E A ++R W E Sbjct: 521 LEAQQQGMEVTMSVEERKRAELQENAI----AMAKEHPEDVAMLIRTWLMEE 568 >gi|88800454|ref|ZP_01116018.1| flagellar M-ring protein FliF [Reinekea sp. MED297] gi|88776784|gb|EAR07995.1| flagellar M-ring protein FliF [Reinekea sp. MED297] Length = 318 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 61/336 (18%), Positives = 133/336 (39%), Gaps = 33/336 (9%) Query: 226 ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVE 285 + + + ++ + +N L+ +G D F++ V A+++ + E +++PD + Sbjct: 1 MTNRQFEYQRKVEESMLARVNSILSPIIGGDKFQAEVSADIDFTKVEQAEELFNPDLIAK 60 Query: 286 RSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV------PLPRSLENTDKKEEQSNYE 339 RS + + + E + N P + + E NYE Sbjct: 61 RSEQTISEERVGE--EQGGIPGALTNQPPTDAEAPEEVDGQGQANGPPRSSRDEATINYE 118 Query: 340 INTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEINKIVSAATGI 398 ++ T ++ RL++AVVV+ +T+ G + Q ++ L + +V A G Sbjct: 119 VDRTLSYTQFQQGRVRRLTVAVVVDDLEVTDPETGETVTQAWDEASLQRLRTLVQDAVGY 178 Query: 399 NSRRGDTITITSMDFLENQLFNSGTV---QVSFMDILSRHFATVINALVFLVGTLLVTFL 455 ++ RGD+I + + +FL Q + F +I + ++ L V L Sbjct: 179 DASRGDSINVINSEFLAEQDAVEQVPFYAEPWFWEIAKQ-----------ILAGLFVLIL 227 Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQ-DIFSHSRN 514 LR AK + +S V L+ +D ++L + ++ ++ S + Sbjct: 228 IFGILRPAVRNLLAKGEDEQAESDEDAALAQLDVDEDLIADDKVSLSAVDEYNLPGPSES 287 Query: 515 LQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 + ++++ L +I + R A +L++W Sbjct: 288 FERQLDA---------LRGLIAEDPGRVALVLKRWI 314 >gi|167750730|ref|ZP_02422857.1| hypothetical protein EUBSIR_01708 [Eubacterium siraeum DSM 15702] gi|167656409|gb|EDS00539.1| hypothetical protein EUBSIR_01708 [Eubacterium siraeum DSM 15702] Length = 542 Score = 200 bits (509), Expect = 5e-49, Method: Composition-based stats. Identities = 82/432 (18%), Positives = 182/432 (42%), Gaps = 42/432 (9%) Query: 3 ILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 + D+L F+ +SL + + + + + V I+ + +N Y +Y L+ Sbjct: 1 MKDKLSAFWSGFKDKWSSLAKNLRIFIITAVSVVIVAAIVLAIVLNQKGYTAIYTGLDSE 60 Query: 59 DVNRISVALSEANI-DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 + +++ A++E I D ++ +G SISVPS R+ L+ QG P S+ N +++++ Sbjct: 61 ESSQVVSAINELGITDVKMGTDG-SISVPSDQADNVRMQLSIQGYPKSTFN--FDVWNSG 117 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARPTASV 175 T +++ +++ L+ + + I +IS + + V I MP+ ++ P SV Sbjct: 118 IGIWSTDTEKKVLQIQQLQTHLMKAINTISAVKNSYVIITMPENSNYVISTDSEEPRVSV 177 Query: 176 MIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKS 230 + N E I LV ++P L+ ++++LDS GKLL+ E + Sbjct: 178 KLDLKNGAQLTSDQVEGIYALVLNSLPGLERENISILDSDGKLLSGENTTVEEDVLYQSR 237 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290 L+ + +Q ++ +N L ++ V +LN D + +Y P V Sbjct: 238 LNFQEQMQSLLKSQLNDTLKKLYK--DYTINVNVKLNYDNSKSEYTIYTP--SVAEDGTS 293 Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYE--------INT 342 + S ++ + + + P T + Q Y+ +NT Sbjct: 294 GGMIESSTKNEGWGGIGSLSGVVGTTSNSDISPNYPTITGDGDNQYYYQNSITVKRLVNT 353 Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402 + + Y +++++ AV V++ + +++ ++ ++++ A G + Sbjct: 354 EIRQLEKNGYSVDKITAAVTVDQINM------------LEADKEQLREVIAFAIGADVA- 400 Query: 403 GDTITITSMDFL 414 +T+ + F+ Sbjct: 401 --NVTVANYPFV 410 >gi|239628992|ref|ZP_04672023.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519138|gb|EEQ59004.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 537 Score = 200 bits (508), Expect = 6e-49, Method: Composition-based stats. Identities = 93/568 (16%), Positives = 200/568 (35%), Gaps = 48/568 (8%) Query: 1 MAILDQLLQFFKSGTSLGR-----TRILILASVILVPIMLFMAARFFVNSP--HYDNLYV 53 M I ++L +GR + + A + ++ A+ +Y L+ Sbjct: 1 MGIKEKLKSVSGEKGGIGRVLDTGKKKAVAAGITAAVVIALAASVLLNTKKSGNYVALFP 60 Query: 54 KLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYEL 113 + + N + L+ ++ R + G ++VP +G + ++ G P ++ +++ Sbjct: 61 GISKEENNEVLTVLNARGVEARRNSEG-EVTVPEDQLGDIMLDMSELGYPKTALP--FDI 117 Query: 114 FDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARP 171 F F T F + + L+ I RT++ ++G+ A V + +PD ++ + G+ Sbjct: 118 FSDNMGFTTTEFEKRQYLLMNLQDRIERTLKDMTGVKNAIVTLNVPDESNYVWDEGGSNS 177 Query: 172 TASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDS-TGKLLTANEMERNILG 228 T S+ + + + AI++LVA +VP L +VTV+++ T + + A+++ G Sbjct: 178 TGSISLTLMPSYELSPEKVSAIKNLVADSVPRLLPENVTVVNAETMQEMVADDIGTTSYG 237 Query: 229 -KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP--DSKVE 285 L ++ +E I L D R + ++ D ++ Y+P + + Sbjct: 238 LNRLDFEAKVEERLENKIKNVLTLAYSPDKLRVSATVVIDYDRMITEDLHYEPQDNGQGV 297 Query: 286 RSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSI 345 + + E N + T +Y ++ Sbjct: 298 VEQYKEGRSLNGGAAGAGGIAGEENNTDIPAYGTAGTGGGAGGTGDYYRDVDYLVSYIKK 357 Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 DN KL++ ++A+ VN D DS ++ S A I Sbjct: 358 QIEKDNVKLQKATVAITVN------------DDNLTDSKKQQLIDAASKAANIAPE---D 402 Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465 I ++S + + + + + A VG L+ L L +R Sbjct: 403 IVVSSFREIPKETVKNDKPALPVQAPAQTGLDYRLIAAAAGVGILIFLLLLLLLMR---- 458 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 KK + +L P A D+ + + ++ Sbjct: 459 --SRKKKHLKEDQMLFAPFEDGDTQEPESVEQRAAEDAVQNSLGRIQPDSSDPVD----- 511 Query: 526 QSDLRLLHMIEINEERFAKILRKWARSE 553 ++ ++N E A ++ W + + Sbjct: 512 ----QVRSFAQMNPEIIASMISSWLKED 535 >gi|74317106|ref|YP_314846.1| flagellar biosynthesis/type III secretory pathway lipoprotein FliF [Thiobacillus denitrificans ATCC 25259] gi|74056601|gb|AAZ97041.1| flagellar biosynthesis/type III secretory pathway lipoprotein FliF [Thiobacillus denitrificans ATCC 25259] Length = 381 Score = 199 bits (506), Expect = 9e-49, Method: Composition-based stats. Identities = 98/397 (24%), Positives = 159/397 (40%), Gaps = 71/397 (17%) Query: 18 GRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS 77 R L LA +ILVP+ AA + N P Y LY +L + AL + I +R+S Sbjct: 16 SPWRRLTLALLILVPLGALAAAYIWFNPPAYRVLYGQLSDRVGGEVIGALEQLGIPYRLS 75 Query: 78 DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137 I VP + AR LAA GLP S ++ ++ ++ SFGL+S Q+ + RALE Sbjct: 76 AGDGRIEVPVDTLHVARYRLAALGLPRSDADVEADV-ERAPSFGLSSLQQQQRQQRALEH 134 Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYKSAEAIRHLV 195 E+AR+IQS+ + ARVH+ +P + F + R TA+V++R + I+ LV Sbjct: 135 ELARSIQSLEAVELARVHLALPKVSPFLRDAPRATAAVLVRLRPRAQLSTEQVTTIQTLV 194 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255 AAAVP + DV VLD G +L E S+ A++ ++ L +LG Sbjct: 195 AAAVPRMKRADVQVLDPRGVVLGGAAPEIEP-----SLRVALEQDLARRALAVLTPWLGA 249 Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV 315 + V A L T + VER R++ + Q Sbjct: 250 ERVSVQVTATLEDATTRET---------VERMRRVAGEGQARP----------------- 283 Query: 316 SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS 375 + T ++ R+ V++ + Sbjct: 284 ------------------------LEKTVRTTVEPEGRIRRIDAIVILAFDAAPD----- 314 Query: 376 ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 + + +++ A G+ RGD + + ++ Sbjct: 315 --------EIRKADELARQALGLQPARGDALNVYALP 343 >gi|291558199|emb|CBL35316.1| flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) [Eubacterium siraeum V10Sc8a] Length = 541 Score = 199 bits (505), Expect = 1e-48, Method: Composition-based stats. Identities = 82/432 (18%), Positives = 182/432 (42%), Gaps = 42/432 (9%) Query: 3 ILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 + D+L F+ +SL + + + + + V I+ + +N Y +Y L+ Sbjct: 1 MKDKLSAFWSGFKDKWSSLAKNLRIFIITAVSVVIVAAIVLAIVLNQKGYTAIYTGLDSE 60 Query: 59 DVNRISVALSEANI-DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 + +++ A++E I D ++ +G SISVPS R+ L+ QG P S+ N +++++ Sbjct: 61 ESSQVVSAINELGITDVKMGTDG-SISVPSDQADNVRMQLSIQGYPKSTFN--FDVWNSG 117 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARPTASV 175 T +++ +++ L+ + + I +IS + + V I MP+ ++ P SV Sbjct: 118 IGIWSTDTEKKVLQIQQLQTHLMKAINTISAVKNSYVIITMPENSNYVISTDSEEPRVSV 177 Query: 176 MIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKS 230 + N E I LV ++P L+ ++++LDS GKLL+ E + Sbjct: 178 KLDLKNDAQLTSDQVEGIYALVLNSLPGLERENISILDSDGKLLSGENTTVEEDVLYQSR 237 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290 L+ + +Q ++ +N L ++ V +LN D + +Y P V Sbjct: 238 LNFQEQMQSLLKSQLNDTLKKLYK--DYTINVNVKLNYDNSKSEYTIYTP--SVAEDGTS 293 Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYE--------INT 342 + S ++ + + + P T + Q Y+ +NT Sbjct: 294 GGMIESSTKNEGWGGIGSLSGVVGTTSNSDISPNYPTITGDGDNQYYYQNSITVKRLVNT 353 Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402 + + Y +++++ AV V++ + +++ ++ ++++ A G + Sbjct: 354 EIRQLEKNGYSVDKITAAVTVDQVNM------------LEADKEQLREVIAFAIGADVA- 400 Query: 403 GDTITITSMDFL 414 +T+ + F+ Sbjct: 401 --NVTVANYPFV 410 >gi|326791543|ref|YP_004309364.1| flagellar M-ring protein FliF [Clostridium lentocellum DSM 5427] gi|326542307|gb|ADZ84166.1| flagellar M-ring protein FliF [Clostridium lentocellum DSM 5427] Length = 529 Score = 197 bits (502), Expect = 3e-48, Method: Composition-based stats. Identities = 90/577 (15%), Positives = 200/577 (34%), Gaps = 82/577 (14%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYV-KLEVSDV 60 I +Q+ + + T + +I + ++ +++ + A + P NL+ L+ + Sbjct: 7 QISNQITEKLNNLTKKQKIQI----GIGVLALIIAITAVVLLTRPKMKNLFSENLDSKSI 62 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +++ L+E I +++ ++ ++I V + +A ++ A +P S + N+ Sbjct: 63 GQVATVLNENGIKYKLINDSTNIQVQENQYEQALMYTAMSDVPESGMTFDQVI---NNTM 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM-GSFRKIGARPTASVMIRA 179 T + ++ RT++S+ GI +ARV +V+P+ ++ + AS+ + Sbjct: 120 STTQTEMTAKNNEYKKQQLERTLRSMEGIESARVELVIPEQKNAYLQSQVESRASIFLTL 179 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI-LGKSLSIVQAIQ 238 K E I ++++V NLD ++ V+DS G L + E + L K I + Sbjct: 180 SKTLTTKQCEGIATYISSSVANLDKKNIVVIDSQGNTLYSGSEESQLGLNKQQEIKLLAE 239 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK------VERSIRLSK 292 ++ ++ L D+ R + L+ D Q Y + +++ + S Sbjct: 240 QDVTQKVSNLLGNMY--DDVRVSPNLILDFDQYQESSQKYQTQGEDESRGVIQQETQASS 297 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 + ++T T ++P S E ++ Y + + Sbjct: 298 STKNNQTGAEPGTTTNGGDIPTYQTNNGTSGESKET----QKDITYAPDKTESVYVKNPG 353 Query: 353 KL--ERLSIAV-VVNKGRLTEVLGRSADQGKIDSYL-------------AEINKIVSAAT 396 + E+ S++V + E + G + I V +AT Sbjct: 354 NVDLEKSSLSVNLFKNKIYREEEVKPTLTGMTWNEFKVSNREQRTLAVDESIVNSVKSAT 413 Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456 GI+ + + + Q+ + D L F + L+ V Sbjct: 414 GID-------NVVVNAYENPIFLDQEVYQIDYKDYLPLVFLVLALLLIAFVVLRF----- 461 Query: 457 LHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ 516 R H + E+ + +L + Sbjct: 462 -----RKHEEIVEVEPELEVEEMLKAAKEQVELEE------------------------- 491 Query: 517 SRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 I + ++ ++ ++ E A +LR W E Sbjct: 492 --IELKETLETKRQIDKFVDEKPEAVANLLRNWLTEE 526 >gi|224531746|ref|ZP_03672378.1| flagellar M-ring protein FliF [Borrelia valaisiana VS116] gi|224511211|gb|EEF81617.1| flagellar M-ring protein FliF [Borrelia valaisiana VS116] Length = 569 Score = 197 bits (502), Expect = 3e-48, Method: Composition-based stats. Identities = 97/593 (16%), Positives = 199/593 (33%), Gaps = 73/593 (12%) Query: 3 ILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 + + FF S + + L +I I+ F+ L+ +E+ Sbjct: 1 MSNFFTNFFVSAKGIFKKASTVQKIALGLIIFFVILAFVFLIGLSTKSQSIALF-GVEIK 59 Query: 59 D---VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115 D ++RIS L N+ + +S +G + K R L + L + Sbjct: 60 DQYLLDRISQRLDRENVKYFLSSDGRIYLDDEKLAKKMRAILVREELVPIHMDPWA--LF 117 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 ++ + +T F + I R++ + + I ++ + A V++VMP+ F++ ASV Sbjct: 118 DIDRWTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKEAQEPVKASV 177 Query: 176 MIRAINPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NI 226 I S K E + L+ A+ L+ ++ ++D++G +L ++ Sbjct: 178 RITPRPGSDIITNRKKVEGLVKLIQYAIEGLESDNIAIVDNSGTILNDFSNLDGIDRIDL 237 Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP----- 280 K + + + I+ AL+ L VD F + V +L+ + I Y P Sbjct: 238 AEKERKLKLKYEAMLRGEIDSALSKVLSVDRFMIARVNVKLDTSKETIESKEYAPIELQS 297 Query: 281 -DSKV-----------ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 D K S + K + + P E N P + Sbjct: 298 QDPKASYNTRKVSDSTIISSQTQKKEYQGQGYSPWGPPGQEGNTPPEYQDLSDITG---K 354 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR-----------LTEVLGRSAD 377 ++ +E N +N K + + ++ +S+ + V+ + + + Sbjct: 355 YNESQEIKNVALNEKKSTSEKEPARIVGVSLGIFVDGIWSFVYDEKGNFVIENGMRKREY 414 Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437 + + I ++ ++ RGD+IT+ ++ F F S F Sbjct: 415 KPMALEEIKNIEDVLQSSFEYKPERGDSITVRNISFDRMNEFRKIDENY----FASERFK 470 Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497 + + L++ F A+ R + E K + + + D Sbjct: 471 YFLFIASIIFSLLILVFTIFFAISRELERRRRLREEELAKQAHLRRQQALMDSGDDIGVD 530 Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 ++ D + L +R E AK++R W Sbjct: 531 DVVGGIREGDELQSNAELLAR------------------EKPEDVAKLIRTWL 565 >gi|224534391|ref|ZP_03674969.1| flagellar M-ring protein FliF [Borrelia spielmanii A14S] gi|224514493|gb|EEF84809.1| flagellar M-ring protein FliF [Borrelia spielmanii A14S] Length = 569 Score = 197 bits (501), Expect = 4e-48, Method: Composition-based stats. Identities = 94/593 (15%), Positives = 198/593 (33%), Gaps = 73/593 (12%) Query: 3 ILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 + + FF S + + L +I ++ F+ L+ +E+ Sbjct: 1 MSNFFTNFFVSAKGIFKKASTVQKIALGLIIFFVVLAFIFLIGLSTKSQSIALF-GVEIK 59 Query: 59 D---VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115 D ++RIS L N+ + +S +G + K R L + L + Sbjct: 60 DQYLLDRISQRLDRENVKYILSSDGRIYLDDEKLAKKMRAILVREELVPVHMDPWA--LF 117 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 ++ + +T F + I R++ + + I ++ + A V++VMP+ F++ ASV Sbjct: 118 DIDRWTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKESQEPVKASV 177 Query: 176 MIRAINPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NI 226 I S K E + L+ A+ L+ ++ ++D++G +L ++ Sbjct: 178 RITPRPGSDIITNRKKIEGLVKLIQYAIEGLESDNIAIVDNSGTILNDFSNLDGIDRIDL 237 Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP----- 280 K + + + I+ AL L VD F + + +L+ + Y P Sbjct: 238 AEKERKLKLKYEAMLRGEIDSALGKVLSVDRFMIARINVKLDTSKETTESKEYAPIELQS 297 Query: 281 -DSKV-----------ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 D K S + K + + P E N P + Sbjct: 298 QDPKASYNTRKVSDSTIISSQTQKKEYQGQGYSPWGPPGQEGNTPPEYQDLSDITG---K 354 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR-----------LTEVLGRSAD 377 ++ +E N +N K + + ++ +S+ + V+ + + + Sbjct: 355 YNEYQEIKNVALNEKKSTSEKEPARIVGVSLGIFVDGIWNFVYDEKGNFVIENGMRKREY 414 Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437 + + I ++ ++ RGD+IT+ ++ F F S F Sbjct: 415 KPMALEEIKNIEDVLQSSFEYKPERGDSITVRNISFDRMNEFREMDENY----FASERFK 470 Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497 + + L++ F A+ R + E K + + + D Sbjct: 471 YFLFIASIIFSLLILMFTIFFAISRELERRRRLREEELAKQAHLRRQQALMDSGDDIGVD 530 Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 ++ D ++ L +R E AK++R W Sbjct: 531 DVVGGIREGDELQNNAELLAR------------------EKPEDVAKLIRTWL 565 >gi|291532064|emb|CBK97649.1| flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) [Eubacterium siraeum 70/3] Length = 542 Score = 196 bits (499), Expect = 7e-48, Method: Composition-based stats. Identities = 81/432 (18%), Positives = 181/432 (41%), Gaps = 42/432 (9%) Query: 3 ILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 + D+L F+ +SL + + + + + V I+ + +N Y +Y L+ Sbjct: 1 MKDKLSAFWSGFKDKWSSLAKNLRIFIITAVSVVIVAAIVLAIVLNQKGYTAIYTGLDSE 60 Query: 59 DVNRISVALSEANI-DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 + +++ A++E I D ++ +G SISVPS R+ L+ QG P S+ N +++++ Sbjct: 61 ESSQVVSAINELGITDVKMGTDG-SISVPSDQADNVRMQLSIQGYPKSTFN--FDVWNSG 117 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARPTASV 175 T +++ +++ L+ + + I +IS + + V I MP+ ++ P SV Sbjct: 118 IGIWSTDTEKKVLQIQQLQTHLMKAINTISAVKNSYVIITMPENSNYVISTDSEEPRVSV 177 Query: 176 MIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKS 230 + N E I LV ++P L+ ++++LDS GKLL+ E + Sbjct: 178 KLDLKNGAQLTSDQVEGIYALVLNSLPGLERENISILDSDGKLLSGENTTVEEDVLYQSR 237 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290 L+ + +Q ++ +N L ++ V +LN D + +Y P V Sbjct: 238 LNFQEQMQSLLKSQLNDTLKKLYK--DYTINVNVKLNYDNSKSEYPIYTP--SVAEDGTS 293 Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYE--------INT 342 + S ++ + + + P + Q Y+ +NT Sbjct: 294 GGMIESSTKNEGWGGIGSLSGVVGTTSNSDISPNYPTIKGDDDNQYYYQNSITVKRLVNT 353 Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402 + + Y +++++ AV V++ + +++ ++ ++++ A G + Sbjct: 354 EIRQLEKNGYSVDKITAAVTVDQINM------------LEADKEQLREVIAFAIGADVA- 400 Query: 403 GDTITITSMDFL 414 +T+ + F+ Sbjct: 401 --NVTVANYPFV 410 >gi|111115116|ref|YP_709734.1| flagellar MS-ring protein [Borrelia afzelii PKo] gi|216264082|ref|ZP_03436076.1| flagellar M-ring protein FliF [Borrelia afzelii ACA-1] gi|110890390|gb|ABH01558.1| flagellar basal-body rod protein [Borrelia afzelii PKo] gi|215980126|gb|EEC20948.1| flagellar M-ring protein FliF [Borrelia afzelii ACA-1] Length = 569 Score = 196 bits (499), Expect = 7e-48, Method: Composition-based stats. Identities = 95/593 (16%), Positives = 192/593 (32%), Gaps = 73/593 (12%) Query: 3 ILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 + + FF S + + L +I I+ F+ F L+ +E+ Sbjct: 1 MSNFFTNFFVSAKGIFKKASTVQKIALGLIIFFVILAFVFLIGFSTKSQSIALF-GVEIK 59 Query: 59 D---VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115 D ++RIS L N+ + +S +G + K R L + L + Sbjct: 60 DQYLLDRISQRLDRENVKYFLSSDGRIYLDDEKLAKKMRAILVREELVPVHMDPWA--LF 117 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 ++ + +T F + I R++ + + I ++ + A V++VMP+ F++ ASV Sbjct: 118 DIDRWTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKESQEPVKASV 177 Query: 176 MIRAINPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NI 226 I S K E + L+ A+ L+ ++ ++D++G +L ++ Sbjct: 178 RITPRPGSDIITNRKKVEGLVKLIQYAIEGLESDNIAIVDNSGTILNDFSNLDGIDRIDL 237 Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP----- 280 K + + + I+ AL L VD F + V +L+ + Y P Sbjct: 238 AEKERKLKLKYEAMLRGEIDTALGKVLSVDRFMIARVNVKLDTSKETTESKEYAPIELQS 297 Query: 281 -DSKV-----------ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 D K S + K + + P E N P + Sbjct: 298 QDPKASYNTRKVSDSTIISSQTQKKEYQGQGYSPWGPPGQEGNTPPEYQDLSDITG---K 354 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR-----------LTEVLGRSAD 377 ++ +E N +N K + + ++ +S+ + V+ + + + Sbjct: 355 YNESQEIKNVALNEKKSTSEKEPARIVGVSLGIFVDGIWNFVYDEKGNFVIENGMRKREY 414 Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437 + + I ++ ++ RGD+IT+ ++ F F S F Sbjct: 415 KPMALEEIKNIEDVLQSSFEYKPERGDSITVRNISFDRMNEFRKMDENY----FASERFK 470 Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497 + + L++ F A I + + LM Sbjct: 471 YFLFIASIIFSLLILVFTIFFA------ISRELERRRRLREEELAKQAHLRRQQALMDGG 524 Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 + LQ+ + E AK++R W Sbjct: 525 DDIGVDDVVGGIREGDELQNNAEL------------LAREKPEDVAKLIRTWL 565 >gi|51598551|ref|YP_072739.1| flagellar MS-ring protein [Borrelia garinii PBi] gi|51573122|gb|AAU07147.1| flagellar basal-body rod protein [Borrelia garinii PBi] Length = 569 Score = 196 bits (497), Expect = 1e-47, Method: Composition-based stats. Identities = 93/593 (15%), Positives = 195/593 (32%), Gaps = 73/593 (12%) Query: 3 ILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 + + FF S + + L +I I+ F+ F L+ +E+ Sbjct: 1 MSNFFTNFFASAKGIFKKASTVQKIALGLIIFFVILAFVFLIGFSTKSQSIALF-GVEIK 59 Query: 59 D---VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115 D ++RIS L N+ + +S +G + K R L + L + Sbjct: 60 DQYLLDRISQRLDRENVKYFLSSDGRIYLDDEKLAKKMRAILVREELVPVHMDPWA--LF 117 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 ++ + +T F + I R++ + + I ++ + A V++VMP+ F++ ASV Sbjct: 118 DIDRWTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKEAQEPVKASV 177 Query: 176 MIRAINPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NI 226 I S K E + L+ A+ L+ ++ ++D++G +L ++ Sbjct: 178 RITPRPGSDIITNRKKVEGLVKLIQYAIEGLESDNIAIVDNSGTILNDFSNLDGIDRIDL 237 Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP----- 280 K + + + I+ AL+ L +D F + V +L+ + Y P Sbjct: 238 AEKERKLKLKYEAMLRGEIDSALSKVLSIDRFMIARVNVKLDTSKETTESKEYAPIELQS 297 Query: 281 -DSKV-----------ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 D K S + K + + P E N P + Sbjct: 298 QDPKASYNTRKVSDSTIISSQTQKKEYQGQGYSPWGPPGQEGNTPPEYQDLSDITG---K 354 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR-----------LTEVLGRSAD 377 ++ +E N +N K + + ++ +S+ + V+ + + + Sbjct: 355 YNESQEIKNVALNEKKSTSEKEPARIVGVSLGIFVDGVWNFVYDEKGDFVIENGMRKREY 414 Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437 + + I ++ ++ RGD+IT+ ++ F F + F ++F Sbjct: 415 KPMALEEIKNIEDVLQSSFEYKPERGDSITVRNISFDRMNEFRKID-ENYFASERFKYFL 473 Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497 + + + L+ F I + + LM Sbjct: 474 FIASIMFSLLILAFTIFF---------AISRELERRRRLREEELAKQAHLRRQQALMDGG 524 Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 + LQ+ + E AK++R W Sbjct: 525 DDIGVDDVVGGIREGDELQNNAEL------------LAREKPEDVAKLIRTWL 565 >gi|224174161|ref|XP_002339855.1| predicted protein [Populus trichocarpa] gi|222832385|gb|EEE70862.1| predicted protein [Populus trichocarpa] Length = 312 Score = 195 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 63/213 (29%), Positives = 105/213 (49%), Gaps = 5/213 (2%) Query: 1 MAILD--QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 M +L+ + Q+F SL TR L L ++I V + ++ F+ P LY L+ Sbjct: 101 MPLLNAEKAGQWFDRLQSLQITRRLGLMAMIAVAVAAGLSVFFWSQKPGMVPLYTGLDQK 160 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 + L A I F + I+VP + AR+ LA GL + S G+EL ++ Sbjct: 161 ATAEATDLLRAAQIPFALDPATGGITVPEKNLHDARLKLAGSGL-TDSGKLGFELMERDP 219 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178 FG++ F++ ALE E++RTI ++ + +RVH+ +P +F + +ASV + Sbjct: 220 GFGVSQFVESARYQHALETELSRTINTLRPVRDSRVHLAIPKPSAFTRQRDVASASVTLE 279 Query: 179 AINPSVYK--SAEAIRHLVAAAVPNLDMGDVTV 209 + +AI H+VAA++P+L VTV Sbjct: 280 LRGGQQLERSQVDAIVHMVAASIPDLAPERVTV 312 >gi|219685754|ref|ZP_03540565.1| flagellar M-ring protein FliF [Borrelia garinii Far04] gi|219672693|gb|EED29721.1| flagellar M-ring protein FliF [Borrelia garinii Far04] Length = 569 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 93/593 (15%), Positives = 195/593 (32%), Gaps = 73/593 (12%) Query: 3 ILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 + + FF S + + L +I I+ F+ F L+ +E+ Sbjct: 1 MSNFFTNFFVSAKGIFKKASTVQKIALGLIIFFVILAFVFLIGFSTKSQSIALF-GVEIK 59 Query: 59 D---VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115 D ++RIS L N+ + +S +G + K R L + L + Sbjct: 60 DQYLLDRISQRLDRENVKYFLSSDGRIYLDDEKLAKKMRAILVREELVPVHMDPWA--LF 117 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 ++ + +T F + I R++ + + I ++ + A V++VMP+ F++ ASV Sbjct: 118 DIDRWTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKEAQEPVKASV 177 Query: 176 MIRAINPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NI 226 I S K E + L+ A+ L+ ++ ++D++G +L ++ Sbjct: 178 RITPRPGSDIITNRKKVEGLVKLIQYAIEGLESDNIAIVDNSGTILNDFSNLDGIDRIDL 237 Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP----- 280 K + + + I+ AL+ L +D F + V +L+ + Y P Sbjct: 238 AEKERKLKLKYEAMLRGEIDSALSKVLSIDRFMIARVNVKLDTSKETTESKEYAPIELQS 297 Query: 281 -DSKV-----------ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 D K S + K + + P E N P + Sbjct: 298 QDPKASYNTRKVSDSTIISSQTQKKEYQGQGYSPWGPPGQEGNTPPEYQDLSDITG---K 354 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR-----------LTEVLGRSAD 377 ++ +E N +N K + + ++ +S+ + V+ + + + Sbjct: 355 YNESQEIKNVALNEKKSTSEKEPARIVGVSLGIFVDGVWNFVYDEKGDFVIENGMRKREY 414 Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437 + + I ++ ++ RGD+IT+ ++ F F + F ++F Sbjct: 415 KPMALEEIKNIEDVLQSSFEYKPERGDSITVRNISFDRMNEFRKID-ENYFASERFKYFL 473 Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497 + + + L+ F I + + LM Sbjct: 474 FIASVIFSLLILAFTIFF---------AISRELERRRRLREEELAKQAHLRRQQALMDGG 524 Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 + LQ+ + E AK++R W Sbjct: 525 DDIGVDDVVGGIREGDELQNNAEL------------LAREKPEDVAKLIRTWL 565 >gi|195941355|ref|ZP_03086737.1| flagellar MS-ring protein [Borrelia burgdorferi 80a] gi|224533205|ref|ZP_03673805.1| flagellar M-ring protein FliF [Borrelia burgdorferi WI91-23] gi|226320592|ref|ZP_03796152.1| flagellar M-ring protein FliF [Borrelia burgdorferi 29805] gi|224511932|gb|EEF82333.1| flagellar M-ring protein FliF [Borrelia burgdorferi WI91-23] gi|226234011|gb|EEH32732.1| flagellar M-ring protein FliF [Borrelia burgdorferi 29805] gi|312149702|gb|ADQ29773.1| flagellar M-ring protein FliF [Borrelia burgdorferi N40] Length = 569 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 94/589 (15%), Positives = 193/589 (32%), Gaps = 73/589 (12%) Query: 7 LLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD--- 59 FF S + + L +I I+ + F L+ +E+ D Sbjct: 5 FTNFFVSAKGIFKKASTVQKIALGLIIFFVILALVFLIGFSTKSQSIALF-GVEIKDQYL 63 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 ++RIS L N+ + +S +G + K R L + L + ++ Sbjct: 64 LDRISQRLDRENVKYFLSSDGRIYLDDEKLAKKMRAILVREELVPVHMDPWA--LFDIDR 121 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 + +T F + I R++ + + I ++ + A V++VMP+ F++ ASV I Sbjct: 122 WTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKESQEPVKASVRITP 181 Query: 180 INPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKS 230 S K E + L+ A+ L+ ++ ++D++G +L ++ K Sbjct: 182 RPGSDIITNRKKVEGLVKLIQYAIEGLESDNIAIVDNSGTILNDFSNLDGIDRIDLAEKE 241 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP------DSK 283 + + + I+ AL+ L VD F + V +L+ + Y P D K Sbjct: 242 RKLKLKYEAMLRSEIDSALSKVLSVDRFMIARVNVKLDTSKETTESKEYAPIELQSQDPK 301 Query: 284 V-----------ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332 S + K + + P E N P + ++ Sbjct: 302 ASYNTRKVSDSTIISSQTQKKEYQGQGYSPWGPPGQEGNTPPEYQDLSDITG---KYNES 358 Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR-----------LTEVLGRSADQGKI 381 +E N +N K + + ++ +S+ + V+ + + + + Sbjct: 359 QEIKNVALNEKKSTSEKEPARIVGVSLGIFVDGIWNFVYDEKGDFVIENGMRKREYKPMA 418 Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441 + I ++ ++ RGD+IT+ ++ F F + F ++F + + Sbjct: 419 LEEIKNIEDVLQSSFEYKPERGDSITVRNISFDRMNEFREID-ENYFASERFKYFLFIAS 477 Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501 + L+ + F I + + LM + Sbjct: 478 IVFSLLILVFTIFF---------AISRELERRRRLREEELAKQAHLRRQQALMDGGDDIG 528 Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 LQS + E AK++R W Sbjct: 529 VDDVVGGIREGDELQSNAEL------------LAREKPEDVAKLIRTWL 565 >gi|323174686|gb|EFZ60306.1| flagellar M-ring protein domain protein [Escherichia coli LT-68] Length = 173 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 56/165 (33%), Positives = 88/165 (53%), Gaps = 4/165 (2%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + LI+A V +M+ A + +P Y L+ L D I L++ Sbjct: 13 WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 71 NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 RALEGE++RTI++I + ARVH+ MP F + P+ASV Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASV 173 >gi|219684584|ref|ZP_03539527.1| flagellar M-ring protein FliF [Borrelia garinii PBr] gi|219671946|gb|EED29000.1| flagellar M-ring protein FliF [Borrelia garinii PBr] Length = 569 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 93/593 (15%), Positives = 195/593 (32%), Gaps = 73/593 (12%) Query: 3 ILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 + + FF S + + L +I I+ F+ F L+ +E+ Sbjct: 1 MSNFFTNFFVSAKGIFKKASTVQKIALGLIIFFVILAFVFLIGFSTKSQSIALF-GVEIK 59 Query: 59 D---VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115 D ++RIS L N+ + +S +G + K R L + L + Sbjct: 60 DQYLLDRISQRLDRENVKYFLSSDGRIYLDDEKLAKKMRAILVREELVPVHMDPWA--LF 117 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 ++ + +T F + I R++ + + I ++ + A V++VMP+ F++ ASV Sbjct: 118 DIDRWTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKEAQEPVKASV 177 Query: 176 MIRAINPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NI 226 I S K E + L+ A+ L+ ++ ++D++G +L ++ Sbjct: 178 RITPRPGSDIITNRKKVEGLVKLIQYAIEGLESDNIAIVDNSGTILNDFSNLDGIDRIDL 237 Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP----- 280 K + + + I+ AL+ L +D F + V +L+ + Y P Sbjct: 238 AEKERKLKLKYEAMLRGEIDSALSKVLSIDRFMIARVNVKLDTSKETTESKEYAPIELQS 297 Query: 281 -DSKV-----------ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 D K S + K + + P E N P + Sbjct: 298 QDPKASYNTRKVSDSTIISSQTQKKEYQGQGYSPWGPPGQEGNTPPEYQDLSDITG---K 354 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR-----------LTEVLGRSAD 377 ++ +E N +N K + + ++ +S+ + V+ + + + Sbjct: 355 YNESQEIKNVALNEKKSTSEKEPARIVGVSLGIFVDGIWNFVYDEKGDFVIENGMRKREY 414 Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437 + + I ++ ++ RGD+IT+ ++ F F + F ++F Sbjct: 415 KPMALEEIKNIEDVLQSSFEYKPERGDSITVRNISFDRMNEFRKID-ENYFASERFKYFL 473 Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497 + + + L+ F I + + LM Sbjct: 474 FIASVMFSLLILAFTIFF---------AISRELERRRRLREEELAKQAHLRRQQALMDGG 524 Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 + LQ+ + E AK++R W Sbjct: 525 DDIGVDDVVGGIREGDELQNNAEL------------LAREKPEDVAKLIRTWL 565 >gi|15594636|ref|NP_212425.1| flagellar MS-ring protein [Borrelia burgdorferi B31] gi|216264746|ref|ZP_03436738.1| flagellar M-ring protein FliF [Borrelia burgdorferi 156a] gi|218249820|ref|YP_002374814.1| flagellar M-ring protein FliF [Borrelia burgdorferi ZS7] gi|221217640|ref|ZP_03589108.1| flagellar M-ring protein FliF [Borrelia burgdorferi 72a] gi|223888733|ref|ZP_03623324.1| flagellar M-ring protein FliF [Borrelia burgdorferi 64b] gi|224533718|ref|ZP_03674306.1| flagellar M-ring protein FliF [Borrelia burgdorferi CA-11.2a] gi|225549084|ref|ZP_03770059.1| flagellar M-ring protein FliF [Borrelia burgdorferi 94a] gi|225550193|ref|ZP_03771153.1| flagellar M-ring protein FliF [Borrelia burgdorferi 118a] gi|226321609|ref|ZP_03797135.1| flagellar M-ring protein FliF [Borrelia burgdorferi Bol26] gi|3915695|sp|Q44912|FLIF_BORBU RecName: Full=Flagellar M-ring protein gi|1165275|gb|AAA85614.1| FliF [Borrelia burgdorferi] gi|1196318|gb|AAB51410.1| flagellar basal body rod protein [Borrelia burgdorferi] gi|2688175|gb|AAC66657.1| flagellar basal-body rod protein (fliF) [Borrelia burgdorferi B31] gi|215981219|gb|EEC22026.1| flagellar M-ring protein FliF [Borrelia burgdorferi 156a] gi|218165008|gb|ACK75069.1| flagellar M-ring protein FliF [Borrelia burgdorferi ZS7] gi|221192317|gb|EEE18536.1| flagellar M-ring protein FliF [Borrelia burgdorferi 72a] gi|223885549|gb|EEF56648.1| flagellar M-ring protein FliF [Borrelia burgdorferi 64b] gi|224513011|gb|EEF83374.1| flagellar M-ring protein FliF [Borrelia burgdorferi CA-11.2a] gi|225369305|gb|EEG98758.1| flagellar M-ring protein FliF [Borrelia burgdorferi 118a] gi|225370310|gb|EEG99748.1| flagellar M-ring protein FliF [Borrelia burgdorferi 94a] gi|226232798|gb|EEH31551.1| flagellar M-ring protein FliF [Borrelia burgdorferi Bol26] gi|312147990|gb|ADQ30649.1| flagellar M-ring protein FliF [Borrelia burgdorferi JD1] Length = 569 Score = 194 bits (493), Expect = 3e-47, Method: Composition-based stats. Identities = 94/589 (15%), Positives = 193/589 (32%), Gaps = 73/589 (12%) Query: 7 LLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD--- 59 FF S + + L +I I+ + F L+ +E+ D Sbjct: 5 FTNFFVSAKGIFKKASTVQKIALGLIIFFVILALVFLIGFSTKSQSIALF-GVEIKDQYL 63 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 ++RIS L N+ + +S +G + K R L + L + ++ Sbjct: 64 LDRISQRLDRENVKYFLSSDGRIYLDDEKLAKKMRAILVREELVPVHMDPWA--LFDIDR 121 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 + +T F + I R++ + + I ++ + A V++VMP+ F++ ASV I Sbjct: 122 WTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKESQEPVKASVRITP 181 Query: 180 INPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKS 230 S K E + L+ A+ L+ ++ ++D++G +L ++ K Sbjct: 182 RPGSDIITNRKKVEGLVKLIQYAIEGLESDNIAIVDNSGTILNDFSNLDGIDRIDLAEKE 241 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP------DSK 283 + + + I+ AL+ L VD F + V +L+ + Y P D K Sbjct: 242 RKLKLKYEAMLRGEIDSALSKVLSVDRFMIARVNVKLDTSKETTESKEYAPIELQSQDPK 301 Query: 284 V-----------ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332 S + K + + P E N P + ++ Sbjct: 302 ASYNTRKVSDSTIISSQTQKKEYQGQGYSPWGPPGQEGNTPPEYQDLSDITG---KYNES 358 Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR-----------LTEVLGRSADQGKI 381 +E N +N K + + ++ +S+ + V+ + + + + Sbjct: 359 QEIKNVALNEKKSTSEKEPARIVGVSLGIFVDGIWNFVYDEKGDFVIENGMRKREYKPMA 418 Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441 + I ++ ++ RGD+IT+ ++ F F + F ++F + + Sbjct: 419 LEEIKNIEDVLQSSFEYKPERGDSITVRNISFDRMNEFREID-ENYFASERFKYFLFIAS 477 Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501 + L+ + F I + + LM + Sbjct: 478 IVFSLLILVFTIFF---------AISRELERRRRLREEELAKQAHLRRQQALMDGGDDIG 528 Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 LQS + E AK++R W Sbjct: 529 VDDVVGGIREGDELQSNAEL------------LAREKPEDVAKLIRTWL 565 >gi|225552378|ref|ZP_03773318.1| flagellar M-ring protein FliF [Borrelia sp. SV1] gi|225371376|gb|EEH00806.1| flagellar M-ring protein FliF [Borrelia sp. SV1] Length = 569 Score = 194 bits (493), Expect = 3e-47, Method: Composition-based stats. Identities = 94/589 (15%), Positives = 192/589 (32%), Gaps = 73/589 (12%) Query: 7 LLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD--- 59 FF S + + L +I I+ + F L+ +E+ D Sbjct: 5 FTNFFVSAKGIFKKASTVQKIALGLIIFFVILALVFLIGFSTKSQSIALF-GVEIKDQYL 63 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 ++RIS L N+ + +S +G + K R L + L + ++ Sbjct: 64 LDRISQRLDRENVKYFLSSDGRIYLDDEKLAKKMRAILVREELVPVHMDPWA--LFDIDR 121 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 + +T F + I R++ + + I ++ + A V++VMP+ F++ ASV I Sbjct: 122 WTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKESQEPVKASVRITP 181 Query: 180 INPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKS 230 S K E + L+ A+ L+ ++ ++D+ G +L ++ K Sbjct: 182 RPGSDIITNRKKVEGLVKLIQYAIEGLESDNIAIVDNRGTILNDFSNLDGIDRIDLAEKE 241 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP------DSK 283 + + + I+ AL+ L VD F + V +L+ + Y P D K Sbjct: 242 RKLKLKYEAMLRGEIDSALSKVLSVDRFMIARVNVKLDTSKETTESKEYAPIELQSQDPK 301 Query: 284 V-----------ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332 S + K + + P E N P + ++ Sbjct: 302 ASYNTRKVSDSTIISSQTQKKEYQGQGYSPWGPPGQEGNTPPEYQDLSDITG---KYNES 358 Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR-----------LTEVLGRSADQGKI 381 +E N +N K + + ++ +S+ + V+ + + + + Sbjct: 359 QEIKNVALNEKKSTSEKEPARIVGVSLGIFVDGIWNFVYDEKGDFVIENGMRKREYKPMA 418 Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441 + I ++ ++ RGD+IT+ ++ F F + F ++F + + Sbjct: 419 LEEIKNIEDVLQSSFEYKPERGDSITVRNISFDRMNEFREID-ENYFASERFKYFLFIAS 477 Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501 + L+ + F I + + LM + Sbjct: 478 IVFSLLILVFTIFF---------AISRELERRRRLREEELAKQAHLRRQQALMDGGDDIG 528 Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 LQS + E AK++R W Sbjct: 529 VDDVVGGIREGDELQSNAEL------------LAREKPEDVAKLIRTWL 565 >gi|258511371|ref|YP_003184805.1| flagellar M-ring protein FliF [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478097|gb|ACV58416.1| flagellar M-ring protein FliF [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 507 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 85/398 (21%), Positives = 165/398 (41%), Gaps = 27/398 (6%) Query: 44 NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP 103 PHY + L+ + ++ L I I G+++ VP+ +ARI LA GLP Sbjct: 46 TRPHYVTIMEGLDDKSLGQVQQELDTLKIPNEIQ--GTAVLVPARYADEARIQLAMAGLP 103 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 S ++ S G T + + AL+ ++ TI I+G+ +A+VHIVMP Sbjct: 104 QSGYDA---YSGVTTSLGETQDEFNLQVLNALQQSLSTTISDINGVESAQVHIVMPQQQL 160 Query: 164 FR-KIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN 220 F + ASV + SA+ I+ LVA +VP L +G+VTV+D G +L+++ Sbjct: 161 FVTQPTTDAKASVFVDLGPGVQLSSAQVYGIQQLVAHSVPGLTVGNVTVVDQYGNVLSSD 220 Query: 221 EME------RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 + L++ + ++++++ + L +G +N V A + + Q Sbjct: 221 VAQGGSSSAVGAASSELAMREKLENDLQQTLISGLQQIVGAENAVVVVHANVTFNQTQTT 280 Query: 275 EIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQ--NMPHVSDRKVPLPRSLENTDKK 332 S++ Q+S++S Q + P+++ ++ N+ Sbjct: 281 THTLINAPGSNTGFITSQEVQKSQSSSGSPGGAAGQAGSNPNLNSTYAAAGGAVTNSTTS 340 Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV 392 +NY + ++ TT D ++ S+ V++N S D+ + A+I V Sbjct: 341 NTITNYAYSYQNQQTTVDPMQVLGYSVGVLLN----------SNDKNITPAVEAQIRNFV 390 Query: 393 SAATGINSRRGD-TITITSMDFLENQLFNSGTVQVSFM 429 + G +G ++++++ F Sbjct: 391 QSVLGTTPSQGKNVVSVSAVPFANPMQAVPAAPGARTW 428 >gi|218288294|ref|ZP_03492593.1| flagellar M-ring protein FliF [Alicyclobacillus acidocaldarius LAA1] gi|218241653|gb|EED08826.1| flagellar M-ring protein FliF [Alicyclobacillus acidocaldarius LAA1] Length = 507 Score = 194 bits (492), Expect = 5e-47, Method: Composition-based stats. Identities = 85/398 (21%), Positives = 165/398 (41%), Gaps = 27/398 (6%) Query: 44 NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP 103 PHY + L+ + ++ L I I G+++ VP+ +ARI LA GLP Sbjct: 46 TRPHYVTIMEGLDDKSLGQVQQELDTLKIPNEIQ--GTAVLVPARYADEARIQLAMAGLP 103 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 S ++ + S G T + + AL+ ++ TI I+G+ +A+VHIVMP Sbjct: 104 QSGYDAYSGI---TTSLGETQDEFNLQVLNALQQSLSSTISDINGVESAQVHIVMPQQQL 160 Query: 164 FR-KIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN 220 F + ASV + SA+ I+ LVA +VP L +G+VTV+D G +L+++ Sbjct: 161 FVTQPTTDAKASVFVDLGPGVQLSSAQVYGIQQLVAHSVPGLTVGNVTVVDQYGNVLSSD 220 Query: 221 EME------RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 + L++ + ++++++ + L +G +N V A + + Q Sbjct: 221 MAQGGSSSAVGAASSELAMREKLENDLQQTLISGLQQIVGAENAVVVVHANVTFNQTQTT 280 Query: 275 EIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQ--NMPHVSDRKVPLPRSLENTDKK 332 S++ Q+S++S Q + P+++ + N+ Sbjct: 281 THTLINAPGSNTGFITSQEVQKSQSSSGSPGGAAGQAGSNPNLNSTYAAAGGGVTNSTTS 340 Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV 392 +NY + ++ TT D ++ S+ V++N S D+ + A+I V Sbjct: 341 NTITNYAYSYQNQQTTVDPMQVLGYSVGVLLN----------SNDKNITPAVEAQIRNFV 390 Query: 393 SAATGINSRRGD-TITITSMDFLENQLFNSGTVQVSFM 429 + G +G ++++++ F Sbjct: 391 LSVLGTTPSQGKNVVSVSAVPFANPMQAVPAAPGARTW 428 >gi|325473786|gb|EGC76974.1| FliF protein [Treponema denticola F0402] Length = 567 Score = 193 bits (491), Expect = 5e-47, Method: Composition-based stats. Identities = 112/595 (18%), Positives = 223/595 (37%), Gaps = 77/595 (12%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + + + T L + I+ VI++ ++L + + + P + + ++DV+ Sbjct: 7 NLKTKFGTLWGKWTKLQKG---IIIGVIVLALVLVVVLGRWSSKPTSVPVI-DMAITDVD 62 Query: 62 ---RISVALSEANIDFRISDNGSSISV-PSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 RI + ++E N+ IS +G ISV + + R L + L +++ F V Sbjct: 63 LRDRIILRINEENVKTTISSDG-IISVADEATARRMRTILLREDLIPKNTSPWA--FFDV 119 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 + T F +EI RA+ E+ R ++++ I A V + +P+ F TA+V+I Sbjct: 120 ERYSRTDFEREIDVRRAITEEVKRHLKALDDIDDANVVVRIPEKALFESEQLPATATVVI 179 Query: 178 RAINPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-----ILG 228 S K E I+ ++ AVP L D+T+ D++G L E+ ++ ++ Sbjct: 180 TPAPGSDISTNRKKIEGIQKMLRLAVPGLKNEDITISDASGIPLNDFEIMKDADRLTLIE 239 Query: 229 KSLSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNM-----DTQQIR-------- 274 K + ++ + NI L G D R V +++M DT +IR Sbjct: 240 KQQKFIAKLERQYGANILTPLQKIYGEDRVRDINVKIDMDMSERSADTTEIRPTVIKEDN 299 Query: 275 -EIVYDPDSKVERSIRLSKDA----QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT 329 E YD DS+V +S+ +S + P+ + E P L T Sbjct: 300 PETSYD-DSQVVQSVTVSSENATTVWEGSGINPQGPMGTEGQTPPSYQDTRNLVGRSTQT 358 Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG-----------RSADQ 378 KE N+ +++ I K+ R +++V ++ + + Sbjct: 359 ITKE---NHLVSSSQIKEVFLP-KMGRRTVSVNIDGVWEKKKDVNGKYIIKNGVIEREYK 414 Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFAT 438 + + KI+ A G ++ R D++++ ++ F + + L R Sbjct: 415 PLSAEEIKQAEKIIKDAIGFDASRKDSVSVVNVKVDRTSQFELEDKE--YFKALQRQT-- 470 Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498 + L + L L R+ + + ++ + + + M D Sbjct: 471 ----IFLLSLAGIALILLFFILYRIISREIERRK----RLREEELLRQAQLERERMLYDQ 522 Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 D+ R + + N+ +M + E A ++R W E Sbjct: 523 QMADADVSMTVEERRRQELQENAI----------NMAREHPEDVALLIRTWLMEE 567 >gi|323186389|gb|EFZ71738.1| flagellar M-ring protein domain protein [Escherichia coli 1357] Length = 173 Score = 193 bits (490), Expect = 7e-47, Method: Composition-based stats. Identities = 56/165 (33%), Positives = 87/165 (52%), Gaps = 4/165 (2%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + LI+A V +M+ A + +P Y L+ L D I L++ Sbjct: 13 WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 71 NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 RALEGE++RTI +I + ARVH+ MP F + P+ASV Sbjct: 129 YQRALEGELSRTIATIGPVKGARVHLAMPKPSLFVREQKSPSASV 173 >gi|167770218|ref|ZP_02442271.1| hypothetical protein ANACOL_01561 [Anaerotruncus colihominis DSM 17241] gi|167667540|gb|EDS11670.1| hypothetical protein ANACOL_01561 [Anaerotruncus colihominis DSM 17241] Length = 530 Score = 192 bits (489), Expect = 1e-46, Method: Composition-based stats. Identities = 98/558 (17%), Positives = 197/558 (35%), Gaps = 49/558 (8%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHY-DNLYVKLEVSDVNRIS 64 ++ F+ T L R + +I S +++ +N P L+ + + ++ Sbjct: 11 KVKTFW---TGLPRKKKIIFTSSAAGIVVIAAVVALILNRPSGNQVLFPDMTREESQQVY 67 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L + + I+ +G + VP+ A +AAQG P S N Y+ F + + + Sbjct: 68 AKLQDMGVQAEINRDGQVV-VPTEDWDNAIFEMAAQGYPKSEPN--YDFFLSNSGWTKSE 124 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF---RKIGARPTASVMIRAIN 181 F Q E + + + GI +A V +P+ + + TA++ I+ Sbjct: 125 FEQRQVLKMQAEDRMRQILMGQDGIESADVSFSIPETSDYIWDQNNKEESTAAITIKMRK 184 Query: 182 P--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDS-TGKLLTANEMERNI--LGKSLSIVQA 236 + +A+++L A ++PNL +V V+D+ TG + A + E K L + Sbjct: 185 GAELSPERVQAVKNLAAYSIPNLTADNVVVVDAATGVQMEAADDESASMFSDKRLEFERQ 244 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 I IE NI + L+ GVD + EL+ D + P+ + + ++ Sbjct: 245 IARGIEDNIIRILSPRYGVDGVTAVARVELDYDKMKTETRQLTPEDTGKGVMTHFEEQFS 304 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 + E+N V + T +Y+I L+ Sbjct: 305 QNGQVAAEGLVGEENNTDVPKYPNQVGAGDGTTSDYSNSIDYDIGYVLTQIEKGEPILKS 364 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 ++ VVVN + E+ ++S + I I++T++D+ E Sbjct: 365 ATVGVVVNDSAFDDRKK------------EELTDLISKSVNIQPE---NISVTNLDYPEP 409 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476 + +G + + + L+ L+ L L R+ + + A++ + Sbjct: 410 ETQQTGGAGEGDGAAGNSILPIIGVGALLLLLILIPIILLLLRRRKKNKVHAAEQALIDA 469 Query: 477 KSILSPPPISSAVTTGLM-PNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 + LM N+ +A + +D + Sbjct: 470 EKERQAQMEREIAEHKLMLQNEALASKNVKEDAIMQE------------------VRTFA 511 Query: 536 EINEERFAKILRKWARSE 553 E N E A ++ R + Sbjct: 512 EQNPEITANLISSMLRED 529 >gi|187918165|ref|YP_001883728.1| flagellar MS-ring protein [Borrelia hermsii DAH] gi|119861013|gb|AAX16808.1| flagellar M-ring protein FliF [Borrelia hermsii DAH] Length = 568 Score = 192 bits (487), Expect = 2e-46, Method: Composition-based stats. Identities = 97/589 (16%), Positives = 206/589 (34%), Gaps = 74/589 (12%) Query: 7 LLQFF----KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD--- 59 + +FF KS + + + L I+ + F L+ + + D Sbjct: 5 ITKFFASVNKSFKKASIVQRVAFGVIFLFIILALIFLVGFSTRKQGIALF-GVGIKDQYL 63 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 +++I L N+ + I+ +G + K R L + L + + LFD ++ Sbjct: 64 LDKIVQRLDRENVGYTITVDGKIYLSDENTSKKMRAILVREELVPVHMDP-WSLFD-IDR 121 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 + +T F + + R++ + + I ++ + A +++VMP+ F++ ASV I Sbjct: 122 WTITDFERNVNLRRSITRAVEQHIVALDDVDAVSINLVMPEKALFKESQEAVKASVRITP 181 Query: 180 INPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKS 230 S K E + L+ A+ L+ ++ ++D+ G +L ++ K Sbjct: 182 KPGSDIVTNRKKVEGLVKLIQYAIEGLESDNIAIVDNKGTILNDFSNVDGIDRIDLAEKE 241 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP------DSK 283 + + ++ I+ AL+ L V F + V L+ Q Y P D K Sbjct: 242 RKLKLKYESMLKDEIDSALSKVLSVGRFMIARVNVTLDTSRQTTESKEYAPIEIEPQDPK 301 Query: 284 V-----------ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332 V S ++ K + P E N P L + +++ Sbjct: 302 VSYNTRKVSDSTLISSQVHKREYEGQGYSPWGPPGQEGNTPPEYRD---LSDIIGKSNEF 358 Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR-----------LTEVLGRSADQGKI 381 +E N +N K + + ++ +S+ + ++ + + + + Sbjct: 359 KEIKNVALNEKKSLSEKEPARVAGISLGIFIDGVWDFVYDESGKFVIENGMRKREYKPIS 418 Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441 D L I ++ ++ RGD+IT+ ++ F F S F V+ Sbjct: 419 DEALKNITDVLQSSFEYKPERGDSITVRNIAFDRVNEFRKIDEAY----FASEKFNFVVF 474 Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501 A+ + L++ F + + + + LM +D+I + Sbjct: 475 AVSLIFAFLILIFTIFFIV------SRELERKRRLREEEFARQAHLRRQQALMDSDDIGV 528 Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 D + + N+ + + E AK++R W Sbjct: 529 DDVVGGLREEDE---LQSNAEL----------LAREKPEDVAKLIRTWI 564 >gi|42526724|ref|NP_971822.1| flagellar MS-ring protein [Treponema denticola ATCC 35405] gi|41817039|gb|AAS11733.1| flagellar M-ring protein FliF [Treponema denticola ATCC 35405] Length = 567 Score = 191 bits (486), Expect = 2e-46, Method: Composition-based stats. Identities = 111/595 (18%), Positives = 226/595 (37%), Gaps = 77/595 (12%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + + + T L + I+ VI++ ++L + + + P + + ++DV+ Sbjct: 7 NLKTKFGTLWGKWTKLQKG---IIIGVIVLALVLVVVLGRWSSKPTSVAVI-DMAITDVD 62 Query: 62 ---RISVALSEANIDFRISDNGSSISV-PSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 RI + ++E N+ IS +G ISV + + R L + L +++ F V Sbjct: 63 LRDRIILRINEENVKTTISSDG-IISVADEATARRMRTILLREDLIPKNTSPWA--FFDV 119 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 + T F +EI RA+ E+ R ++++ I A V + +P+ F TA+V+I Sbjct: 120 ERYSRTDFEREIDVRRAITEEVKRHLKALDDIDDANVVVRIPEKALFESEQLPATATVVI 179 Query: 178 RAINPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-----ILG 228 S K E I+ ++ AVP L D+T+ D++G L E+ ++ ++ Sbjct: 180 TPAPGSDISTNRKKIEGIQKMLRLAVPGLKNEDITISDASGIPLNDFEIMKDADRLTLIE 239 Query: 229 KSLSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNM-----DTQQIR-------- 274 K + ++ + NI L G D R V +++M DT +IR Sbjct: 240 KQQKFIAKLERQYGANILTPLQKIYGEDRVRDINVKIDMDMSERSADTTEIRPTVIKEDN 299 Query: 275 -EIVYDPDSKVERSIRLSKDA----QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT 329 E YD DS+V +S+ +S + P+ E P L T Sbjct: 300 PETSYD-DSQVVQSVTVSSENATTVWEGSGINPQGPTGTEGQTPPSYQDTRNLVGRSTQT 358 Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG-----------RSADQ 378 KE N+ +++ I K+ R +++V ++ + + Sbjct: 359 ITKE---NHLVSSSQIKEVFLP-KMGRRTVSVNIDGVWEKKKDVNGKYIIKNGVIEREYK 414 Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFAT 438 + + KI+ A G ++ R D++++ ++ F + + L R Sbjct: 415 PLSAEEIKQAEKIIKDAIGFDASRKDSVSVVNVKVDRTSQFELEDKE--YFKALQRQTIF 472 Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498 +++ + + +L+ F+ + +++ E + + + M D Sbjct: 473 LLS--LAGIALILIFFILYRII--------SREIERRKRLREEELLRQAQLERERMLYDQ 522 Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 D+ R + + N+ +M + E A ++R W E Sbjct: 523 QMADADVSMTVEERRRQELQENAI----------NMAREHPEDVALLIRTWLMEE 567 >gi|168334480|ref|ZP_02692651.1| flagellar M-ring protein FliF [Epulopiscium sp. 'N.t. morphotype B'] Length = 533 Score = 191 bits (485), Expect = 3e-46, Method: Composition-based stats. Identities = 85/518 (16%), Positives = 175/518 (33%), Gaps = 41/518 (7%) Query: 44 NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP 103 +SP LY L++ +++I L NI + + +G +I V + A+I L + +P Sbjct: 46 SSPQTAILYQNLDMEAISQIDEVLGANNITYELI-DGRTIQVNEEDLNTAKIILTRENVP 104 Query: 104 SSSSNSGYELFDK-VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM- 161 Y +D NS T + + + ++ + + GI A V + +P+ Sbjct: 105 RG----DYTFYDAITNSMSTTEAEKRTKLIYLKQVDLENILMGMEGIAEATVQLNVPEEK 160 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TAN 220 SF +ASV++ E I L++ AV NL + ++T+LDS +L + + Sbjct: 161 NSFIASQMESSASVVLTLHRQISDNQIEGIARLLSNAVDNLKLENITILDSDSNVLFSGD 220 Query: 221 EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD- 279 E S+ + + +I + L+ D + L+ D + + Y Sbjct: 221 EFGEMTASDQQSLKSSAEKDIVNKLTTLLSPIY--DEVAISPNLILDFDYFEQTKEEYTT 278 Query: 280 --PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSN 337 DS+ + S+ + Q A ++ N+ V V N + Sbjct: 279 PITDSQTGLVDQESRRNYEATNIQDGFAPGLDPNVEDV-PEYVAGNELSGNYEGGTSDII 337 Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG 397 Y+ N + ++ + +V +N + + D K+ + T Sbjct: 338 YKHNKTLSNEIKNIGTIDYNNSSVAINLTKYNVYDEALLEDTLPDDQTWAEFKLANDVTN 397 Query: 398 INSRRGDTITITSMDFLENQLFNSGTVQVSFMD--ILSRHFATVINALVFLVGTLLVTFL 455 I TI M + + F+D + VI ++ L ++ + Sbjct: 398 ILVVEQATIDAIKMGAGLENVAVIAYEKPVFIDKEPFTLQTEDVIPYILLLALGAVIVVV 457 Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL 515 + + + + + E ++ P + Sbjct: 458 MIRFRKPVEEVVTEDEFEFEDLLPVAGP-------------------------EEEEEDS 492 Query: 516 QSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 I ++ ++ I+ E A +LR W + Sbjct: 493 LQDIELKEVIETKAKIDKFIDEKPEAVAGLLRNWLEED 530 >gi|119953090|ref|YP_945299.1| flagellar MS-ring protein [Borrelia turicatae 91E135] gi|119861861|gb|AAX17629.1| flagellar M-ring protein FliF [Borrelia turicatae 91E135] Length = 568 Score = 191 bits (484), Expect = 4e-46, Method: Composition-based stats. Identities = 101/589 (17%), Positives = 203/589 (34%), Gaps = 74/589 (12%) Query: 7 LLQFF----KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD--- 59 + +FF K + + + L I+ F+ F L+ + + D Sbjct: 5 ITKFFASVNKKFQKASMVQKVAFGVIALFIILAFIFLIGFSTKKQGVALF-GVGIKDQYL 63 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 ++RI L ++++ I+ +G +M K R L + L + + LFD ++ Sbjct: 64 LDRIVQRLDRESVEYIITADGKIYLSDENMSKKMRAILVREELVPVHMDP-WSLFD-IDR 121 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 + +T F + + R++ + + I ++ + A +++VMP+ F++ ASV I Sbjct: 122 WTITDFERNVNLRRSITRAVEQHIVALDDVDAVSINLVMPEKALFKESQEAVKASVRITP 181 Query: 180 INPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKS 230 S K E + L+ A+ L+ ++ ++D+ G +L ++ K Sbjct: 182 KPGSDIVTNRKKVEGLVKLIQYAIEGLESDNIAIVDNKGTVLNDFSNLDGIDRIDLAEKE 241 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP------DSK 283 + + + I+ AL+ L VD F + V L+ Q Y P D K Sbjct: 242 RKLKLKYESMLRDEIDSALSKVLSVDRFMIARVNVTLDTSRQTTESKEYAPIEIEPQDPK 301 Query: 284 V-----------ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332 V S ++ K + P E N P L + +++ Sbjct: 302 VSYNTRKVSDSTLLSSQVHKREYEGQGYSPWGPPGQEGNTPPEYRD---LSDIIGKSNEF 358 Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR-----------LTEVLGRSADQGKI 381 +E N +N K + ++ +S+ + ++ + + + + Sbjct: 359 KEIKNVALNEKKSLNEKEPARIAGISLGIFIDGVWDFVYDESGNFIIENGMRKREYKPIS 418 Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441 D L I ++ ++ RGD+I I ++ F F + TV Sbjct: 419 DEALKNITDVLQSSFEYKPERGDSIAIRNVAFDRVNEFRKIDEDYFSTEKFKFLIFTVSI 478 Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501 L+ V F+ + + LM +D+I + Sbjct: 479 IFALLILIFTVFFIV----------SRELERRRRLREEEFSRQAHLRRQQALMDSDDIGV 528 Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 D ++ I QS+ L + E AK++R W Sbjct: 529 D-----------DVVGGIREEDELQSNAEL--LAREKPEDVAKLIRTWI 564 >gi|229826302|ref|ZP_04452371.1| hypothetical protein GCWU000182_01674 [Abiotrophia defectiva ATCC 49176] gi|229789172|gb|EEP25286.1| hypothetical protein GCWU000182_01674 [Abiotrophia defectiva ATCC 49176] Length = 536 Score = 189 bits (480), Expect = 1e-45, Method: Composition-based stats. Identities = 93/571 (16%), Positives = 195/571 (34%), Gaps = 73/571 (12%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 + L+F+ + + R ++ + + + I+L +FV P L + S+ +I Sbjct: 14 RFLEFWNKYSPVQRILMIAVGVGVFLAIIL---VSYFVTRPVMTTLVKAEKTSETAKIKD 70 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L + I + +S + +ISV A + LA +PS + ELF N F T Sbjct: 71 LLDDNGISYELSSDALTISVDQKDYSNALLVLAKNDIPSIGMSID-ELF--NNGFSTTES 127 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM-GSFRKIGARPTASVMIRAINPSV 184 +++ + + + + ++ I A V I P + + SV++ + Sbjct: 128 EKKLKANIYKQDWLRQVLLNMDNIENAVVSITSPTTGNTLFAETKDTSVSVILTVSSDFK 187 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQAIQHEI 241 ++A+ I +++A AV N +T+ D +G LL N++ + + + Sbjct: 188 QENAKTIANILAGAVGNDSTKAITIADQSGNLLFNGADNDVFSGGINSISDYEKNVTGVK 247 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + I K L D+ + A +M+ Y P + E+ ++ + ++ S Sbjct: 248 KEEIYKLLVGLPAYDDAKVAANFIFDMNKISSVYTEYTPPTGAEQGLKSHDYSYEAQNSN 307 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE--RLSI 359 + + + +++Y N K T ++ SI Sbjct: 308 ANG--GTPGTDANSETDYMVQSGGNAQGNVSINENDYLPNKKVTNTEAAMGAIKPNESSI 365 Query: 360 AVV----VNKGRLTEVLGRSADQGKIDSYL------------AEINKIVSAATGINSRRG 403 A+ VN + D ++ + +VS ATG+ Sbjct: 366 AITLISYVNYNETEMKKNGRLEGTTFDEFMFANQAATELTVPENVITLVSRATGVPEE-- 423 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 ++ L F F T N L+ ++ L+V L R L Sbjct: 424 ------NIQIL-------AWQMPIFQPEEGGGFFTFTNILMIMLAVLIVALLIFVVFRGL 470 Query: 464 HNIDDAK-KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 ++ + + E+ + +L+ + ++ I Sbjct: 471 APVEVVELEPELSVEQLLATTKENQSLDD---------------------------IEFS 503 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ + ++ N E A++LR W E Sbjct: 504 DKSETRKMIEKFVDENPEATAQLLRNWLSDE 534 >gi|2105148|gb|AAB57899.1| FliF [Treponema denticola] Length = 567 Score = 187 bits (476), Expect = 3e-45, Method: Composition-based stats. Identities = 112/596 (18%), Positives = 226/596 (37%), Gaps = 79/596 (13%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + + + T L + I+ VI++ ++L + + + P + + ++DV+ Sbjct: 7 NLKTKFGTLWGKWTKLQKG---IIIGVIVLALVLVVVLGRWSSKPTSVAVI-DMAITDVD 62 Query: 62 ---RISVALSEANIDFRISDNGSSISVPSSMVGKARIH---LAAQGLPSSSSNSGYELFD 115 RI + ++E N+ IS +G ISV R+ L +P ++S F Sbjct: 63 LRDRIILRINEGNVKTSISSDG-IISVADVEATARRMRTILLREDLIPKNTSPW---AFF 118 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 V + T F +EI RA+ E+ R ++++ I A V + +P+ F TA+V Sbjct: 119 DVERYSRTDFEREIDVRRAITEEVKRHLKALDDIDDANVVVRIPEKALFESEQLPATATV 178 Query: 176 MIRAINPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-----I 226 +I S K E I+ ++ AVP L D+T+ D++G L E+ ++ + Sbjct: 179 VITPAPGSDISTNRKKIEGIQKMLRLAVPGLKNEDITISDASGIPLNDFEIMKDADRLTL 238 Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNM-----DTQQIR------ 274 + K + ++ + NI L G D R V +++M DT +IR Sbjct: 239 IEKQQKFIAKLERQYGANILTPLQKIYGEDRVRDINVKIDMDMSERSADTTEIRPTVIKE 298 Query: 275 ---EIVYDPDSKVERSIRLSKDAQRS---ETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 E YD DS+V +S+ +S + + P+ E P L Sbjct: 299 DNPETSYD-DSQVVQSVTVSSENATTVWEGRINPQGPTGTEGQTPPSYQDTRNLVGRSTQ 357 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG-----------RSAD 377 T KE N+ +++ I K+ R +++V ++ + Sbjct: 358 TITKE---NHLVSSSQIKEVFLP-KMGRRTVSVNIDGVWEKKKDVNGKYINLNGVIEREY 413 Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437 + + + KI+ A G ++ R D++++ ++ F + + L R Sbjct: 414 KPLSAEEIKQAEKIIKDAIGFDASRKDSVSVVNVKVDRTSQFELEDKE--YFKALQRQTI 471 Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497 +++ + + +L+ F+ + +++ E + + + M D Sbjct: 472 FLLS--LAGIALILIFFILYRII--------SREIERRKRLREEELLRQAQLERERMLYD 521 Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 D+ R + + N+ +M + E A ++R W E Sbjct: 522 QQMADADVSMTVEERRRQELQENAI----------NMAREHPEDVALLIRTWLMEE 567 >gi|254853083|ref|ZP_05242431.1| flagellar MS-ring protein [Listeria monocytogenes FSL R2-503] gi|258606431|gb|EEW19039.1| flagellar MS-ring protein [Listeria monocytogenes FSL R2-503] Length = 425 Score = 186 bits (473), Expect = 7e-45, Method: Composition-based stats. Identities = 71/349 (20%), Positives = 152/349 (43%), Gaps = 20/349 (5%) Query: 42 FVNSPHYDN-LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++N+P + LY L + +++ L++ +D+ + +G+ I V + R A Sbjct: 33 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA----LEGEIARTIQSISGIVAARVHI 156 G+P + + L +S G + +++ LE EI ++ + I +A V + Sbjct: 92 GIPYTGQDGNDILL--NSSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TIDSASVQL 147 Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDST 213 +P+ S F + + TA+V ++ N + I+ V+AAVPN+ DV ++D+ Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207 Query: 214 GKLLTANEM----ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 +++ + + + I AI ++ +I L++ +DNFR +N D Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVSVNFD 267 Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 + Y D KV + + S D + + ES ++P+ +++ + Sbjct: 268 EIKQNTEHYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTY-T 326 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSAD 377 ++K E +NYE+++ L + ++ V V++ L + A+ Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQNALNKNGVDMAE 374 >gi|125972986|ref|YP_001036896.1| flagellar M-ring protein FliF [Clostridium thermocellum ATCC 27405] gi|125713211|gb|ABN51703.1| flagellar M-ring protein FliF [Clostridium thermocellum ATCC 27405] Length = 517 Score = 186 bits (473), Expect = 8e-45, Method: Composition-based stats. Identities = 96/564 (17%), Positives = 191/564 (33%), Gaps = 67/564 (11%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + Q+ F+K+ +TRIL+ + +++V + + + + Y L + ++ Sbjct: 7 KMQQQVTDFWKNLDKSQKTRILVTSGILVVVLTIAIVM---LTRTTYVPLITVQDPDSIS 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I AL E NI ++ G I V S +A LA+ GL +E + Sbjct: 64 AIEEALKERNIKYK-HGEGRRILVDSKDKNEAEFALASAGLTEPGMT--FEDAWSLLKVS 120 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA-RPTASVMIRAI 180 + ++ + + ++ + A + + +P+ F A+V I Sbjct: 121 SSESDKKQLWQNFKKNSLIAKLKMFDNVKDADIELTIPEDTMFFTDSKSEAKAAVRITPK 180 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQAIQH 239 + E I +VA+++ LD +VTV+D+ +L + NI + I+ Sbjct: 181 GELTPEQVEGIVMVVASSIEGLDPKNVTVVDNNFNILNQDLSDGMNIPSSHYKLKLRIKE 240 Query: 240 EIEMNINKALAAFLGVDNF-RSAVVAELNMDTQQI-REIVYDP---DSKVERSIRLSKDA 294 E+E NI + +F AV L++D R+ + P D V R +++ Sbjct: 241 ELEKNIKNLYSGRSDSYDFISVAVNPVLDLDKVTKNRKEIEKPTGLDEAVVSEERKTEEL 300 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT-DKKEEQSNYEINTKSIATTHDNYK 353 A ++ N P+ ++ + K E N A Sbjct: 301 I---NGNQGGAPGMDANPGTGDVPTYPIDAGQNSSYESKSEIINRIFTETLTAEEKAIGT 357 Query: 354 LE----RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 + +++A L D D ++ E + +S ATGI IT+ Sbjct: 358 MNFQESSMTVA-------LWYGNRVPDDSKLTDEFIEEFKQGLSNATGIPVG---KITVN 407 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 + + + R + + F + +L+ L L + R Sbjct: 408 --------KQKLAPQEEEIVPMSERIKQFIDDYGFFALLIILIIALMLSVMPR-----KK 454 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 K ++ + + P L P IN + Sbjct: 455 KSPQLAPELATAGGPNVDEAEEELPP-----------------------INFEEHSEIKK 491 Query: 530 RLLHMIEINEERFAKILRKWARSE 553 ++ + ++ E A++LR W + Sbjct: 492 QIENFVKQKPESVAQLLRNWLSED 515 >gi|203287751|ref|YP_002222766.1| flagellar M-ring protein [Borrelia recurrentis A1] gi|201084971|gb|ACH94545.1| flagellar M-ring protein [Borrelia recurrentis A1] Length = 568 Score = 185 bits (469), Expect = 2e-44, Method: Composition-based stats. Identities = 97/589 (16%), Positives = 202/589 (34%), Gaps = 74/589 (12%) Query: 7 LLQFFKSGTSLGRT----RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD--- 59 + +FF S + + + + + L I+ + F L+ + + D Sbjct: 5 ITKFFASISKKIKKATMVQKVAFGVIALFIILSLVFLVSFSTRKQGIALF-GISIKDQYL 63 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 +++I L N + I+ +G +M + R L + L + + LFD ++ Sbjct: 64 LDKIVQRLDRENAKYTITADGRIYLSDENMSKRIRAILVREELIPMHMDP-WSLFD-IDR 121 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 + +T F + I R++ + + I ++ + A +++VMP+ F++ ASV I Sbjct: 122 WTITDFERNINLRRSITRAVEQHIVALDDVDAVSINLVMPEKALFKESQESVRASVRITP 181 Query: 180 INPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKS 230 S + E + L+ AV L+ ++ ++D+ G +L ++ K Sbjct: 182 KPGSDIATNRQKVEGLVKLIQYAVEGLEADNIVIVDNKGTILNDFSNLDGVDRIDLAEKE 241 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP------DSK 283 + + + I+ AL+ L D F + V L+ Q Y P + K Sbjct: 242 RKLKLKYESMLRDEIDFALSKVLSSDRFMIARVNVTLDTSKQTTESKEYAPIELEPQNPK 301 Query: 284 V-----------ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332 V S ++ K + P E N P + + +++ Sbjct: 302 VSYNTRKVSDSTLISSQVHKREYEGQGYSPWGPPGQEGNTPPEYGDMSDI---IGKSNEF 358 Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR-----------LTEVLGRSADQGKI 381 +E N +N K + + ++ +S+ + ++ + + + + Sbjct: 359 KEIKNVALNEKKSLSEKEPARVSGISLGIFIDGIWDFVYDESGNFVMENGMRKREYKPIS 418 Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441 D L I ++ ++ RGD+IT+ ++ F F + V Sbjct: 419 DETLKSITDVLQSSFEYKPERGDSITVRNIIFDRASEFRKIDEDYFAGEKFKFLIFVVSI 478 Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501 + L+ V F+ I + + LM DNI + Sbjct: 479 IIALLILIFTVFFI----------ISRELERRRRLREEEFARQAHLRRQQALMDGDNIGI 528 Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 D N+ QS+ + + E AK++R W Sbjct: 529 D-----------NVVGGFREEDELQSNAEI--LAREKPEDVAKLIRTWI 564 >gi|256004783|ref|ZP_05429758.1| flagellar M-ring protein FliF [Clostridium thermocellum DSM 2360] gi|281417197|ref|ZP_06248217.1| flagellar M-ring protein FliF [Clostridium thermocellum JW20] gi|255991233|gb|EEU01340.1| flagellar M-ring protein FliF [Clostridium thermocellum DSM 2360] gi|281408599|gb|EFB38857.1| flagellar M-ring protein FliF [Clostridium thermocellum JW20] gi|316940778|gb|ADU74812.1| flagellar M-ring protein FliF [Clostridium thermocellum DSM 1313] Length = 517 Score = 184 bits (468), Expect = 3e-44, Method: Composition-based stats. Identities = 96/564 (17%), Positives = 191/564 (33%), Gaps = 67/564 (11%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + Q+ F+K+ +TRIL+ + +++V + + + + Y L + ++ Sbjct: 7 KMQQQVTDFWKNLDKSQKTRILVTSGILVVVLTIAIVM---LTRTTYVPLITVEDPDSIS 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I AL E NI ++ G I V S +A LA+ GL +E + Sbjct: 64 AIEEALKERNIKYK-HGEGRRILVDSKDKNEAEFALASAGLTEPGMT--FEDAWSLLKVS 120 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA-RPTASVMIRAI 180 + ++ + + ++ + A + + +P+ F A+V I Sbjct: 121 SSESDKKQLWQNFKKNSLIAKLKMFDNVKDADIELTIPEDTMFFTDSKSEAKAAVRITPK 180 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQAIQH 239 + E I +VA+++ LD +VTV+D+ +L + NI + I+ Sbjct: 181 GELTPEQVEGIVMVVASSIEGLDPKNVTVVDNNFNILNQDLSDGMNIPSSHYKLKLRIKE 240 Query: 240 EIEMNINKALAAFLGVDNF-RSAVVAELNMDTQQI-REIVYDP---DSKVERSIRLSKDA 294 E+E NI + +F AV L++D R+ + P D V R +++ Sbjct: 241 ELEKNIKNLYSGRSDSYDFISVAVNPVLDLDKVTKNRKEIEKPTGLDEAVVSEERKTEEL 300 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT-DKKEEQSNYEINTKSIATTHDNYK 353 A ++ N P+ ++ + K E N A Sbjct: 301 I---NGNQGGAPGMDANPGTGDVPTYPIDAGQNSSYESKSEIINRIFTETLTAEEKAIGT 357 Query: 354 LE----RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 + +++A L D D ++ E + +S ATGI IT+ Sbjct: 358 MNFQESSMTVA-------LWYGNRVPDDSKLTDEFIEEFKQGLSNATGIPVG---KITVN 407 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 + + + R + + F + +L+ L L + R Sbjct: 408 --------KQKLAPQEEEIVPMSERIKQFIDDYGFFALLIILIIALMLSVMPR-----KK 454 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 K ++ + + P L P IN + Sbjct: 455 KSPQLAPELATAGGPNVDEAEEELPP-----------------------INFEEHSEIKK 491 Query: 530 RLLHMIEINEERFAKILRKWARSE 553 ++ + ++ E A++LR W + Sbjct: 492 QIENFVKQKPESVAQLLRNWLSED 515 >gi|203284212|ref|YP_002221952.1| flagellar M-ring protein [Borrelia duttonii Ly] gi|201083655|gb|ACH93246.1| flagellar M-ring protein [Borrelia duttonii Ly] Length = 568 Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats. Identities = 97/589 (16%), Positives = 203/589 (34%), Gaps = 74/589 (12%) Query: 7 LLQFFKSGTSLGRT----RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD--- 59 + +FF S + + + + + L I+ + F L+ + + D Sbjct: 5 ITKFFASISKKIKKATMVQKVAFGVIALFIILSLVFLVSFSTRKQGIALF-GISIKDQYL 63 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 +++I L N + I+ +G +M + R L + L + + LFD ++ Sbjct: 64 LDKIVQRLDRENAKYTITADGRIYLSDENMSKRIRAILVREELIPMHMDP-WSLFD-IDR 121 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 + +T F + I R++ + + I ++ + A +++VMP+ F++ ASV I Sbjct: 122 WTITDFERNINLRRSITRAVEQHIVALDDVDAVSINLVMPEKALFKESQESVRASVRITP 181 Query: 180 INPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKS 230 S + E + L+ AV L+ ++ ++D+ G +L ++ K Sbjct: 182 KPGSDIATNRQKVEGLVKLIQYAVEGLEADNIVIVDNKGTILNDFSNLDGVDRIDLAEKE 241 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP------DSK 283 + + + I+ AL+ L D F + V L+ Q Y P D K Sbjct: 242 RKLKLKYESMLRDEIDFALSKVLSSDRFMIARVNVTLDTSKQTTESKEYAPIELEPQDPK 301 Query: 284 V-----------ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332 V S ++ K + P E N P + + +++ Sbjct: 302 VSYNTRKVSDSTLISSQVHKREYEGQGYSPWGPPGQEGNTPPEYRDMSDI---IGKSNEF 358 Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR-----------LTEVLGRSADQGKI 381 +E N +N K + + ++ +S+ + ++ + + + + Sbjct: 359 KEIKNVALNEKKSLSEKEPARVSGISLGIFIDGIWDFVYDESGNFVMENGMRKREYKPIS 418 Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441 D L I ++ ++ RGD+IT+ ++ F + F + V Sbjct: 419 DETLKSITDVLQSSFEYKPERGDSITVRNIIFDRSSEFRKIDEDYFAGEKFKFLIFVVSI 478 Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501 + L+ V F+ I + + LM DNI + Sbjct: 479 IIALLILIFTVFFI----------ISRELERRRRLREEEFARQAHLRRQQALMDGDNIGI 528 Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 D ++ QS+ + + E AK++R W Sbjct: 529 D-----------DVVGGFREEDELQSNAEI--LAREKPEDVAKLIRTWI 564 >gi|238916746|ref|YP_002930263.1| flagellar M-ring protein FliF [Eubacterium eligens ATCC 27750] gi|238872106|gb|ACR71816.1| flagellar M-ring protein FliF [Eubacterium eligens ATCC 27750] Length = 536 Score = 182 bits (461), Expect = 2e-43, Method: Composition-based stats. Identities = 103/578 (17%), Positives = 211/578 (36%), Gaps = 75/578 (12%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 I +LL+ +K+ T R + +I+ S ++V I + + ++ P Y L + S++N Sbjct: 7 QIPARLLEIWKNWT---RNQKIIIVSAVVVFIAAVIVIAYVLSRPTYQELTKCEDYSEMN 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK-VNSF 120 ++ L++ ++I N +++V + A++ +A+ + SGY L D +S Sbjct: 64 TVTTLLTDNGYTYQI--NNMTVNVKKQDLTNAKMLIASNDI----KPSGYSLDDALNSSL 117 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM-GSFRKIGARPTASVMIRA 179 T + + LE + A I S+ GI A V + + D SF T +V + Sbjct: 118 TTTEADKNKKYAKYLETKFATDIASLDGIKKASVTVHLSDDTNSFYSTKKDTTVAVTVDT 177 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-----GKSLSIV 234 +AE+I +A AV + +T++D+TGK L + L Sbjct: 178 SKTVSDDAAESIAVFLATAVGSSTTNGITIIDTTGKTLFNGSDNSGSVSNISYSSKLKYK 237 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 I+ + + + ++ A+ +L+ DT Y E + + Sbjct: 238 SQIESTVAAGVKNTALSTSLFNDATVAINLDLDWDTVNKIATEYTAQEGREEGLYDTSYE 297 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 S + + + ++ +Q Y N T + K+ Sbjct: 298 LESTGNNGAGGTPGTTSNGEGGTTYDLTDGTSSSSTYTVKQYQYLPNQLVTTTNTEPGKI 357 Query: 355 ER----LSIA----VV-----------VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395 +S+ VV ++ E ++AD ++ A+ ++S A Sbjct: 358 VYDTSTMSVTLIKNVVYNEDDCKKLGYLDNMTWDEFKAQNADPVQVQVN-ADWMNMLSNA 416 Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455 TGI++ IT + + +++ +LSR + AL + +LV F+ Sbjct: 417 TGISTN-----NITVLAYNVPYFYDAAKTS-----VLSRASFWIQIALAVAILGILV-FI 465 Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL 515 L + R L + K+ E+ + +L+ ++ Sbjct: 466 VLRSARPLTV--EEKEPELSVEEMLAST--------------------------KENQPT 497 Query: 516 QSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 I+ ++ + ++ N E A +LR W + Sbjct: 498 VDEIDLQEKSETRKAIEKFVDENPEAVALLLRNWLNDD 535 >gi|257140592|ref|ZP_05588854.1| flagellar MS-ring protein [Burkholderia thailandensis E264] Length = 592 Score = 182 bits (461), Expect = 2e-43, Method: Composition-based stats. Identities = 52/141 (36%), Positives = 83/141 (58%), Gaps = 2/141 (1%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 78 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 137 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++S++ + AARVH+ +P Sbjct: 138 LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTVESVNAVRAARVHLAIPKP 195 Query: 162 GSFRKIGARPTASVMIRAINP 182 F + P+ASV++ + Sbjct: 196 SVFVRDREAPSASVLVDLVPG 216 >gi|330982829|gb|EGH80932.1| flagellar MS-ring protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 317 Score = 180 bits (458), Expect = 4e-43, Method: Composition-based stats. Identities = 58/338 (17%), Positives = 122/338 (36%), Gaps = 62/338 (18%) Query: 258 FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA----------QRSETSQPESAVT 307 +++ V A ++ + ++PD RS + + + ++QP T Sbjct: 1 YKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNEQRSSSSSSGGVPGALSNQPPGPAT 60 Query: 308 V----------------------EQNMPHVSDRKVPLPRSLENTDKK--EEQSNYEINTK 343 + N + D P K + N+E++ Sbjct: 61 APQTAGAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPADKRVQSTKNFELDRS 120 Query: 344 SIATTHDNYKLERLSIAVVVNK-GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402 T +L RLS+AVVV+ + G + + LA ++V A G ++ R Sbjct: 121 ISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVSRAPWSAADLARFTRLVQDAVGFDASR 180 Query: 403 GDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 GD++++ ++ F + Q F DI+ + VG + + L Sbjct: 181 GDSVSVINVPFSSERAEVLPEASFYSQPWFWDIVKQ-----------AVGVIFILILVFG 229 Query: 459 ALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF-SHSRNLQ 516 LR L+NI + K+ E+ G G + ND ++L + S + Sbjct: 230 VLRPVLNNITNGKRKELAGFGG-DAELGGMGGLDGELSNDRVSLGGPQSILLPSPTEGYD 288 Query: 517 SRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 +++N+ + ++ + R A+++++W ++ Sbjct: 289 AQLNA---------IKSLVAEDPGRVAQVVKEWINTDE 317 >gi|238924170|ref|YP_002937686.1| flagellar biosynthesis/type III secretory pathway lipoprotein [Eubacterium rectale ATCC 33656] gi|238875845|gb|ACR75552.1| flagellar biosynthesis/type III secretory pathway lipoprotein [Eubacterium rectale ATCC 33656] gi|291524899|emb|CBK90486.1| flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) [Eubacterium rectale DSM 17629] gi|291529040|emb|CBK94626.1| flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) [Eubacterium rectale M104/1] Length = 533 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 101/578 (17%), Positives = 210/578 (36%), Gaps = 75/578 (12%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 AILD++ ++K + R+ +L S++ V I+ + ++ P L S+ + Sbjct: 7 AILDKITAWWKKFNTKQRS---VLISIVAVVIVALVILGVVISRPTQVELVEAQSASEAS 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L + NI + + D+ V S A + L G+P+ + + SF Sbjct: 64 TIKGVLEDNNISYEV-DSKLVFFVNKSDEVNAIMALGDNGIPAQAYSIDN---VTDGSFS 119 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG-SFRKIGARPTASVMIRAI 180 T ++ LE ++ ++ S + A V I MPD + K TA+V + Sbjct: 120 TTEADKQKKYQVYLEDKLKDHLEKQSYVNEASVDITMPDKDGTILKSKEEATAAVTLGLK 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAI 237 + A AI LVA A+ N +T++D +L + + + LS Q + Sbjct: 180 DSITDDQAYAIARLVATALGNDTTKGITIIDKKANVLYSGGDSDTSAGLATSQLSYKQKL 239 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD-PDSKVERSIRLSKDAQR 296 + +++ + K L + N + +++ + + Y PD + + + S+ + Sbjct: 240 EEQVKNEVKKTLESSNIFSNIEVGMNLDIDFSKTETAQKNYTLPDGQTDTGLLDSESNYQ 299 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE- 355 S+ + ++AV + + + + + Y + K + +D ++ Sbjct: 300 SDATNGQAAVPGTDSNSDDTTYTT-QDGTPSESSITDNDKKYLNDEKITTSKNDGGSIKY 358 Query: 356 -RLSIAVV-----------------VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG 397 SI VV + E + AD K+ ++ V ATG Sbjct: 359 DSSSITVVATRYKVYDESTLEKNGKLKDTSWEEYKAKHADPVKVTDVDQDLVTSVQNATG 418 Query: 398 INSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457 I+ I+ + + + + + + S DIL + L+ LG Sbjct: 419 ISQ-------ISFLVYEQPEFVDKASGVRSLSDILQ-----------IAITVLIFALLGF 460 Query: 458 HALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS 517 + S+ + + +++DS + ++ L+ Sbjct: 461 VVFK------------------------STRSSEEEPKEEELSVDSLLEQTAENNEPLED 496 Query: 518 RINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 I ++ L + ++ N E A++LR W + E Sbjct: 497 -IGYNEKTETRLLIEKFVDENPEAAAQLLRNWLNEDWE 533 >gi|218133660|ref|ZP_03462464.1| hypothetical protein BACPEC_01529 [Bacteroides pectinophilus ATCC 43243] gi|217991035|gb|EEC57041.1| hypothetical protein BACPEC_01529 [Bacteroides pectinophilus ATCC 43243] Length = 542 Score = 177 bits (449), Expect = 4e-42, Method: Composition-based stats. Identities = 90/583 (15%), Positives = 203/583 (34%), Gaps = 81/583 (13%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 I +LL + T R I+ +V+++ +++ VN P Y+ L + + Sbjct: 6 QIGQKLLDVWNKYTVKQRAVIVSSVAVVIIALVILAVV---VNRPQYETLTTCSSYAQMQ 62 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS-F 120 ++ L++ +I + ++DN + V + A++ LA+ + + GY + D ++ F Sbjct: 63 EVTNLLTDNSISYNVADNSMVVKVRKEDLTNAKMALASSNI----QSDGYTIEDALSGSF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIRA 179 T ++ + LE + ++S G+ A V + + + + T V+++ Sbjct: 119 STTENDKQKKWQKYLESKFKTDLESFDGVKEASVTVTLGEATNIYYSTKQEATVGVVLQL 178 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKS-------L 231 + A + L+A +V N ++T++ + G L + ++ + ++ G S L Sbjct: 179 TKQIDDEVAAGMAQLLATSVGNKTTDNITIISTDGTTLFSKSDTDLSVSGTSTVGLNGRL 238 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD-PDSKVERSIRL 290 I+ I ++ + + A D + ++N D Y PD + Sbjct: 239 KYQSQIESSITSHLRQGMLATGLYDEAYVQMNLDMNWDAVNTINTQYSAPDGMEQGLYSE 298 Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 S + S T+ N S + ++ ++ Y N T Sbjct: 299 SYEEASSGTNGAGGVPGTSSNSGDNSTTYYVSDGTNSTSEYSVKKYAYLPNVLVTTTDSQ 358 Query: 351 NYKL----ERLSIAVV---------------VNKGRLTEVLGRSADQGKIDSYLAEINKI 391 K+ +++ V ++ + ++A IN Sbjct: 359 PGKVIYNTSSMTVTFVKNVIYNEDECRKRGLLDNTTWDDFKAQNAQSVAAQVDQTWINA- 417 Query: 392 VSAATGINSRRGDTITITSM--DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGT 449 +S TGI+++ IT+ + F + N+ R++ + + +V Sbjct: 418 ISTGTGIDTQ---NITVLAYQKPFFVDSEGNA----------FVRNWTFWLQIALAVVIL 464 Query: 450 LLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF 509 L+ F+ + R L + K+ E+ + +L Sbjct: 465 GLLAFVVFRSARPLTV--EEKEPELSVEEMLRTT-------------------------- 496 Query: 510 SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 + I+ + + ++ N E A +LR W Sbjct: 497 KEQQEPLEDIDLQEKSEIRKAIEKFVDENPEAVALLLRNWLND 539 >gi|266623336|ref|ZP_06116271.1| flagellar M-ring protein FliF [Clostridium hathewayi DSM 13479] gi|288864874|gb|EFC97172.1| flagellar M-ring protein FliF [Clostridium hathewayi DSM 13479] Length = 539 Score = 177 bits (448), Expect = 5e-42, Method: Composition-based stats. Identities = 78/517 (15%), Positives = 170/517 (32%), Gaps = 43/517 (8%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 Y L+ + + N I L+ + + + G ++VP + VG + ++ G P ++ Sbjct: 54 EYVVLFPGISREENNEILAVLNGRGVGAKRNAEG-EVTVPENQVGDIMLDMSELGYPKTA 112 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR- 165 +++F F T F + + L+ I RT++ ++GI A V + + D ++ Sbjct: 113 LP--FDIFSDNMGFTTTEFEKRQYLLLNLQDRIERTLKDMNGIKNAIVTLNVSDDSNYVW 170 Query: 166 -KIGARPTASVMIRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLD--STGKLLTAN 220 GA T +V + + + AI++L+A +VP L +VTV++ + ++++ + Sbjct: 171 DDQGADSTGAVSLTLMPDCELSPEKVGAIKNLIANSVPRLLPENVTVVNAETMQEMVSDD 230 Query: 221 EMERNILG-KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 G L ++ ++ I L R + ++ D ++ Y+ Sbjct: 231 VGGLTSYGLGRLDFETKVEKRLQDKIMNVLTLAYPPGQIRVSATVVIDYDKMITEDLQYE 290 Query: 280 P--DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSN 337 P + + + + + E N + + + Sbjct: 291 PQDNGQGVVEHYKTGQSVNGQGGGAGGVAGEENNTDIPTYGAAGTGGANGANGDYYRDVD 350 Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG 397 Y + DN KL++ ++A+ VN LT +S ++ S A Sbjct: 351 YLVGYIKKQIEKDNVKLQKATVAITVNDSNLT------------ESKKQQLIDAASKAAN 398 Query: 398 INSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457 I I F + + + + + + + ++ Sbjct: 399 IAPE-----DIVVSSFQQIASDKTPEPEKPVIPVTAPGVGGIDPRILIAGAA-------- 445 Query: 458 HALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS 517 + + G D + LD + S Sbjct: 446 -----AGIFLFLVLLFLILRHRKKKQRKEDQELFGPFEGDAVELDRDIAERAEESAVENR 500 Query: 518 RINSYVSKQ-SDLRLLHMIEINEERFAKILRKWARSE 553 N V Q ++ E N E A ++ W + + Sbjct: 501 LTNIPVKPQDPVNQVRSFAEDNPEIIASMISNWLKED 537 >gi|160939666|ref|ZP_02087014.1| hypothetical protein CLOBOL_04558 [Clostridium bolteae ATCC BAA-613] gi|158437457|gb|EDP15221.1| hypothetical protein CLOBOL_04558 [Clostridium bolteae ATCC BAA-613] Length = 535 Score = 175 bits (444), Expect = 2e-41, Method: Composition-based stats. Identities = 87/520 (16%), Positives = 182/520 (35%), Gaps = 47/520 (9%) Query: 44 NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP 103 N+ Y L+ + + N I L + + +D G ++VP +G I ++ G P Sbjct: 51 NAGSYVTLFPGISREENNEILAVLGGRGVAAKRNDEG-EVTVPEDQLGDIMIEMSELGYP 109 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 ++ +++F F T F + + L+ + RT++ ++GI A V + +PD + Sbjct: 110 KTALP--FDIFSDNMGFTTTEFEKRQYLLMNLQDRLERTLKDMTGIKNAIVTLNVPDESA 167 Query: 164 FR--KIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDS-TGKLLT 218 + + T SV + + + AI++LVA +VP L VTV+++ T + + Sbjct: 168 YVWEDEDSGSTGSVSLTLMPSYDLSPEKVSAIKNLVADSVPRLAPERVTVVNAETMQEMV 227 Query: 219 ANEMERNILG-KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 ++++ G L ++ ++ I L D R + ++ D + Sbjct: 228 SDDIGNTAYGLNRLDFEAKVEERLQNKIKNVLTLAYSPDKIRVSATVVIDYDKMITENLE 287 Query: 278 YDP--DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ 335 Y+P + + E N + + + T Sbjct: 288 YEPQENGQGVVDHYRESRGVAGGQIGAGGIAGEENNTDIPAYGTAGTGGTAQGTGDYYRD 347 Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395 +Y ++ DN KL++ ++A+ VN D +S ++ S A Sbjct: 348 VDYLVSYIKKQIEKDNVKLQKATVAITVN------------DDNLTESKKQQLIDAASKA 395 Query: 396 TGINSRRGDTITITSMDFL--ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVT 453 I I ++S + E + +D + I A ++ LL+ Sbjct: 396 ANIAPE---DIVVSSFREVPKETAPAKPALPVQAPVDTGIDYRTIAIAAGAGILLFLLIL 452 Query: 454 FLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR 513 FL RR +D + + + + ND + + +D Sbjct: 453 FLIFGRRRRRQMKEDQELFAPFEGEVPPSADMEERAEEAAVQNDLGRMQVNPED------ 506 Query: 514 NLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ ++N E A ++ W + + Sbjct: 507 -------------PVEQVRSFAQMNPEIIASMISSWLKED 533 >gi|23011692|ref|ZP_00051978.1| COG1766: Flagellar biosynthesis/type III secretory pathway lipoprotein [Magnetospirillum magnetotacticum MS-1] Length = 285 Score = 172 bits (437), Expect = 1e-40, Method: Composition-based stats. Identities = 60/293 (20%), Positives = 125/293 (42%), Gaps = 9/293 (3%) Query: 261 AVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV 320 V AEL+++ + R +DP+S+V RS + + S T E V+V +P + + Sbjct: 2 QVAAELDLNRVESRSESFDPESRVVRSTQTRSEN--SLTGGAEGQVSVGNELPGANQNQA 59 Query: 321 PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380 P+ +++ K EE +NYEI+ + T + +L RLS+AV+V+ G+ Q + Sbjct: 60 -QPQQKDSSQKNEETTNYEISRVTKVETLEGGRLRRLSVAVLVDGVYAPGADGKPVYQPR 118 Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440 D+ + I +V A G + RGD + + ++ F E+ +LS V+ Sbjct: 119 PDAEIERIAALVRTAVGYDKGRGDQVEVVNLRFAESPAAPDFAEPGLIQSLLSPTKEDVM 178 Query: 441 NALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIA 500 + V +LL + + +R L + E + + + + + Sbjct: 179 RLVELAVLSLLTVIVLMAVVRPLLR-RVLESDEPAALAGPAGALALAGAPGAPGTVEVVV 237 Query: 501 LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 +++ + +++N + ++ R++ M+ + ++LR W Sbjct: 238 RENATKKFLDS-----AKLNGEIQAETVERVVDMVRASPSETVEVLRNWIHDT 285 >gi|289678989|ref|ZP_06499879.1| flagellar MS-ring protein [Pseudomonas syringae pv. syringae FF5] Length = 178 Score = 171 bits (433), Expect = 3e-40, Method: Composition-based stats. Identities = 47/155 (30%), Positives = 79/155 (50%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 + F ++ + + R + L + + + A + P Y LY L D +I L Sbjct: 24 MSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + ANI++ + N ++ V S V +ARI LA G+ + +N G+E+ DK G + FM+ Sbjct: 84 TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162 R LEGE+ARTI +++ + ARVH+ +P Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSS 178 >gi|291536002|emb|CBL09114.1| flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) [Roseburia intestinalis M50/1] Length = 532 Score = 170 bits (432), Expect = 4e-40, Method: Composition-based stats. Identities = 93/579 (16%), Positives = 202/579 (34%), Gaps = 78/579 (13%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 IL+++ +++K + + ++ + +VI+V + + A V+ P+ L+ ++ Sbjct: 7 NILNKITEWWKKFNTKQKALLISIVAVIIVALAILAAV---VSKPNMVTLHECQTTAEAG 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 + L +I +++S +G V + A I L +PS ++ F Sbjct: 64 TVKDLLDGESISYQMSQDGLIFYVDAKDEAAASILLGKNDIPSQGASIDNVF---DGGFS 120 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMGSFRKIGARPTASVMIRAI 180 T + L+ A ++++S + +A V + +P D G+ A+V++ Sbjct: 121 STEADKTKKYKVYLQKYFAEQLETLSNVESASVTLDIPNDDGTILAKDQDSYAAVILTLN 180 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER---NILGKSLSIVQAI 237 A + +A + N + ++ +LDS +L + + LS+ Sbjct: 181 GDMDEDQAAGLAKYIATQLGNKNTDNIQILDSNSNVLFSGDSSDTNVGTANSQLSVKSKA 240 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDT-QQIREIVYDPDSKVERSIRLSKDAQR 296 ++ ++ + + D+ A ++ DT ++ Y PD + + + + Sbjct: 241 ENLVKSKVKDVMVGSSLFDHVEVAPELVMDFDTSEEATHEYYAPDGQTNGMVGSKSEYES 300 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE- 355 + + N V + ++ + +NY+ N K + + + Sbjct: 301 ESEGGAAATPGTDSN---DDTSYVIEDNNYTHSTVTDTTTNYQNNEKVTKKSSNGGTVNY 357 Query: 356 -RLSIAVV-----------------VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG 397 S+++V ++ E + ++D I I ++S ATG Sbjct: 358 ADSSVSLVATKYRIYDEDTLRASGALDNMTFDEYVAANSDPTPITVDQEYIT-MISNATG 416 Query: 398 INSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457 I + D ITI + E +F + S D L +I L+ G Sbjct: 417 IPT---DKITIIA---QEEPVFQYSSGGRSASDYLQIVLVVLILLLL-----------GY 459 Query: 458 HALRRLHNIDDAK-KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ 516 R A+ + E+ +S+L S+ Sbjct: 460 VVFRSTRKEKVAEIEPELSVESLLEST--------------------------KESQEEM 493 Query: 517 SRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 I ++ + + +E N E A +LR W E E Sbjct: 494 QDIGYNEKSETRILIEKFVEDNPEAAASLLRNWLNEEWE 532 >gi|257413753|ref|ZP_04744108.2| flagellar M-ring protein FliF [Roseburia intestinalis L1-82] gi|257202322|gb|EEV00607.1| flagellar M-ring protein FliF [Roseburia intestinalis L1-82] gi|291538496|emb|CBL11607.1| flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) [Roseburia intestinalis XB6B4] Length = 537 Score = 170 bits (431), Expect = 5e-40, Method: Composition-based stats. Identities = 93/579 (16%), Positives = 202/579 (34%), Gaps = 78/579 (13%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 IL+++ +++K + + ++ + +VI+V + + A V+ P+ L+ ++ Sbjct: 12 NILNKITEWWKKFNTKQKALLISIVAVIIVALAILAAV---VSKPNMVTLHECQTTAEAG 68 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 + L +I +++S +G V + A I L +PS ++ F Sbjct: 69 TVKDLLDGESISYQMSQDGLIFYVDAKDEAAASILLGKNDIPSQGASIDNVF---DGGFS 125 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMGSFRKIGARPTASVMIRAI 180 T + L+ A ++++S + +A V + +P D G+ A+V++ Sbjct: 126 STEADKTKKYKVYLQKYFAEQLETLSNVESASVTLDIPNDDGTILAKDQDSYAAVILTLN 185 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER---NILGKSLSIVQAI 237 A + +A + N + ++ +LDS +L + + LS+ Sbjct: 186 GDMDEDQAAGLAKYIATQLGNKNTDNIQILDSNSNVLFSGDSSDTNVGTANSQLSVKSKA 245 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDT-QQIREIVYDPDSKVERSIRLSKDAQR 296 ++ ++ + + D+ A ++ DT ++ Y PD + + + + Sbjct: 246 ENLVKSKVKDVMVGSSLFDHVEVAPELVMDFDTSEEATHEYYAPDGQTNGMVGSKSEYES 305 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE- 355 + + N V + ++ + +NY+ N K + + + Sbjct: 306 ESEGGAAATPGTDSN---DDTSYVIEDNNYTHSTVTDTTTNYQNNEKVTKKSSNGGTVNY 362 Query: 356 -RLSIAVV-----------------VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG 397 S+++V ++ E + ++D I I ++S ATG Sbjct: 363 ADSSVSLVATKYRIYDEDTLRASGALDNMTFDEYVAANSDPTPITVDQEYIT-MISNATG 421 Query: 398 INSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457 I + D ITI + E +F + S D L +I L+ G Sbjct: 422 IPT---DKITIIA---QEEPVFQYSSGGRSASDYLQIVLVVLILLLL-----------GY 464 Query: 458 HALRRLHNIDDAK-KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ 516 R A+ + E+ +S+L S+ Sbjct: 465 VVFRSTRKEKVAEIEPELSVESLLEST--------------------------KESQEEM 498 Query: 517 SRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 I ++ + + +E N E A +LR W E E Sbjct: 499 QDIGYNEKSETRILIEKFVEDNPEAAASLLRNWLNEEWE 537 >gi|168334544|ref|ZP_02692700.1| flagellar M-ring protein FliF [Epulopiscium sp. 'N.t. morphotype B'] Length = 459 Score = 169 bits (428), Expect = 1e-39, Method: Composition-based stats. Identities = 76/483 (15%), Positives = 158/483 (32%), Gaps = 40/483 (8%) Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK-VNSFGLTSFMQEITRVRALEG 137 +G +I V + A+I L + +P Y +D NS T + + + Sbjct: 6 DGRTIQVNEEDLNTAKIILTRENVPRG----DYTFYDAITNSMSTTEAEKRTKLIYLKQV 61 Query: 138 EIARTIQSISGIVAARVHIVMPDM-GSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVA 196 ++ + + GI A V + +P+ SF +ASV++ E I L++ Sbjct: 62 DLENILMGMEGIAEATVQLNVPEEKNSFIASQMESSASVVLTLHRQISDNQIEGIARLLS 121 Query: 197 AAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255 AV NL + ++T+LDS +L + +E S+ + + +I + L+ Sbjct: 122 NAVDNLKLENITILDSDSNVLFSGDEFGEMTASDQQSLKSSAEKDIVNKLTTLLSPIY-- 179 Query: 256 DNFRSAVVAELNMDTQQIREIVYD---PDSKVERSIRLSKDAQRSETSQPESAVTVEQNM 312 D + L+ D + + Y DS+ + S+ + Q A ++ N+ Sbjct: 180 DEVAISPNLILDFDYFEQTKEEYTTPITDSQTGLVDQESRRNYEATNIQDGFAPGLDPNV 239 Query: 313 PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372 V V N + Y+ N + ++ + +V +N + Sbjct: 240 EDV-PEYVAGNELSGNYEGGTSDIIYKHNKTLSNEIKNIGTIDYNNSSVAINLTKYNVYD 298 Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMD-- 430 + D K+ + T I TI M + + F+D Sbjct: 299 EALLEDTLPDDQTWAEFKLANDVTNILVVEQATIDAIKMGAGLENVAVIAYEKPVFIDKE 358 Query: 431 ILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVT 490 + VI ++ L ++ + + + + + + E ++ P Sbjct: 359 PFTLQTEDVIPYILLLALGAVIVVVMIRFRKPVEEVVTEDEFEFEDLLPVAGP------- 411 Query: 491 TGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 + I ++ ++ I+ E A +LR W Sbjct: 412 ------------------EEEEEDSLQDIELKEVIETKAKIDKFIDEKPEAVAGLLRNWL 453 Query: 551 RSE 553 + Sbjct: 454 EED 456 >gi|88800453|ref|ZP_01116017.1| flagellar M-ring protein FliF [Reinekea sp. MED297] gi|88776783|gb|EAR07994.1| flagellar M-ring protein FliF [Reinekea sp. MED297] Length = 268 Score = 169 bits (428), Expect = 1e-39, Method: Composition-based stats. Identities = 50/164 (30%), Positives = 73/164 (44%), Gaps = 1/164 (0%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 L R L + I L + + Y L D + L NI Sbjct: 57 GFNKLTMMRQFGLLIGLAASIALGLGVVLWSQKETYRPLMNSTNSYDARELIEVLQANNI 116 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 DF I + + V + + +AR+ +A GL S GYEL D+ G + FM+ + Sbjct: 117 DFDIDPSSGVLLVRQNDLHQARLAVAGAGL-SDDQTVGYELLDQDQPLGQSQFMENARYL 175 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 R+LEGE+ARTI SI+ + ARVH+ +P+ F + TASV Sbjct: 176 RSLEGELARTISSINQVKTARVHLAIPERSVFVRDRRETTASVF 219 >gi|302670718|ref|YP_003830678.1| flagellar M-ring protein FliF [Butyrivibrio proteoclasticus B316] gi|302395191|gb|ADL34096.1| flagellar M-ring protein FliF [Butyrivibrio proteoclasticus B316] Length = 539 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 91/564 (16%), Positives = 201/564 (35%), Gaps = 52/564 (9%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++L ++ T+ +T I+ +V+L+ I++ + +N P Y L + + I Sbjct: 10 QKVLDWWNQFTAKQKTLIVGAGTVVLLTIIILVTV---LNQPQYVLLAQATSTKEASEIK 66 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L +I++++SD+G V A + L A + S + SF T Sbjct: 67 DLLDSNSINYKMSDDGLEFRVLKKDQANANLILGANDIQSYAYTIDN---VTEGSFSTTE 123 Query: 125 FMQEITRVRALEGEIART-IQSISGIVAARVHIVMPDMG-SFRKIGARPTASVMIRAINP 182 + ++ V+ LE ++ + I +A V + +PD + +A +++ +P Sbjct: 124 YDKQKKYVKYLESKLEHDMLAKFDTIDSANVTLHIPDDDGTLIGNKDEASAWILLNINDP 183 Query: 183 SVYKSAEA--IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQAI 237 + + A + VAA++ D+ +LD +G LL + E G L++ Sbjct: 184 NGFGEENANFVAKAVAASLGKKSTNDIVILDYSGNLLFSGSEETTDAGIASNQLNLKTKA 243 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + ++ + K L D+ + A L+ ++ Y P + + + + Sbjct: 244 EQIVKNEVKKVLLGTKLYDDIQVASNLVLDFSKEERTTHNYTPAEDQTQGVLSHESIYNA 303 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER- 356 E S + V + ++ EE +Y N T+ ++ Sbjct: 304 ENVNGVSGIPGTDTNEDDETTYVTQDNTNSSSTITEEDRSYLPNEDITTRTNIPGAIKYD 363 Query: 357 -LSIAV-VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT--SMD 412 SI+V +N + E A G +D +I A + I + + Sbjct: 364 ESSISVTAINYVVMKEEDYDKAANGDLDWKDYKIANTEPATMQVPDE---MINVVAKATG 420 Query: 413 FLENQLFNSGTVQVSFMDILSRHF--ATVINALVFLVGTLLVTFLGLH-ALRRLHNIDDA 469 + + Q F+D + ++ L+ L+ F+ + ++ Sbjct: 421 IAAGNVAMAAYTQYVFIDKTGANITVTDILQIATILIILGLLAFIVIRSMWTSKKTEEEP 480 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 + E+ + +L P + ++I +D+ ++ + Sbjct: 481 EPEELSVEQLLESTPEETL--------EDIEMDTGSE--------------------TKR 512 Query: 530 RLLHMIEINEERFAKILRKWARSE 553 + ++ N E A +LR W + Sbjct: 513 LIEKFVDENPEAAATLLRNWLNED 536 >gi|291519597|emb|CBK74818.1| flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) [Butyrivibrio fibrisolvens 16/4] Length = 537 Score = 166 bits (421), Expect = 8e-39, Method: Composition-based stats. Identities = 89/576 (15%), Positives = 194/576 (33%), Gaps = 71/576 (12%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 AIL+++L++++ T R + +++ S+ V ++ + + P L V + Sbjct: 7 AILNKILEWWRKFT---RRQQVLIVSITAVVVVSLIILGVILTRPTMMQLVVCEDGKQAA 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 + L + I + S +G + + +A + L + +P+S + SF Sbjct: 64 AVKTLLEDEGIKYETSQDGYTFYIDEKDEWRANVLLGSNEIPTSKYTIDNVI---DGSFS 120 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPT-ASVMIRAI 180 T ++ LE + A I+ + ARV + +P+ +P +SV++ Sbjct: 121 TTEADKQKRYKILLEQQFAEDIEQFEMVEKARVTLNIPEDDGTIIARDQPGWSSVILTLS 180 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240 P ++ I ++A + N ++T++D+ G LL G S S Q + + Sbjct: 181 APISDETVTGIATIMATNLANETTDNITIMDTDGNLLY-PTANTGSAGASASANQDARDK 239 Query: 241 IEMNINKALAAFLGVDNFR--SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 I + L N +V L+M+ + + YD R+ S Sbjct: 240 ARAEIVSRVQTVLDGTNLYDAVSVGVNLSMNFDENSYVDYDYSVDEGRTEGYLDSESGSS 299 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEE-QSNYEINTKSIATTHDNYK--LE 355 +S V + D + + + EE +Y + + + K L+ Sbjct: 300 SSSIGGNGGVPGTDTNDDDTTYVMEDNNQTQTSTEEFVKDYLPDERITTHKDEIGKQILD 359 Query: 356 RLSIAV------------------VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG 397 SI+V + G+ + ++ +I +IV+ TG Sbjct: 360 DSSISVTCKKFAIYNQDKMEKDGTLTEAGQTFDEFVKANSNPVQMEVTDDIVEIVARTTG 419 Query: 398 INSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457 + + + + Q ++ + + + ++ L+ LG Sbjct: 420 FPVA---NVKVVAYEIPMFQYSEGMPIKPT-------------DIIQIVLALLIFAMLGF 463 Query: 458 HALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS 517 R L V L +D IA ++ ++ Sbjct: 464 VVFRSLKTE------------------EEEPVEQELTIDDLIASTAAEEEEELEDIGYTE 505 Query: 518 RINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + + + + ++ E A++LR W + Sbjct: 506 KSEARIL------IEKFVDEKPEAVAQLLRNWLNED 535 >gi|289811515|ref|ZP_06542144.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 158 Score = 166 bits (420), Expect = 1e-38, Method: Composition-based stats. Identities = 42/117 (35%), Positives = 69/117 (58%), Gaps = 2/117 (1%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 44 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 103 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ Sbjct: 104 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLA 158 >gi|257457887|ref|ZP_05623046.1| flagellar M-ring protein FliF [Treponema vincentii ATCC 35580] gi|257444600|gb|EEV19684.1| flagellar M-ring protein FliF [Treponema vincentii ATCC 35580] Length = 567 Score = 164 bits (416), Expect = 3e-38, Method: Composition-based stats. Identities = 99/555 (17%), Positives = 204/555 (36%), Gaps = 74/555 (13%) Query: 42 FVNSPHYDNLYVKLEVSDVN---RISVALSEANIDFRISDNGSSISVPSSMVGK-ARIHL 97 + P L V+D RI + L+E N+ +S +G ISV + R L Sbjct: 44 WSAKPSLVPLI-DTPVTDATVRERIVLRLNEENVKATVSQSG-IISVNDEQTARRMRAIL 101 Query: 98 AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 + L +++ V + T F + I RA+ E+ + I+++ + A V + Sbjct: 102 LREDLIPQNTDPWA--LFDVERWTRTDFERNIDVRRAVIEEVRKHIKALDDVDDASVVVN 159 Query: 158 MPDMGSFRKIGARPTASVMIRAINPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDST 213 +P+ F+ TASV++ S K E I+ L+ AV L ++T+ D++ Sbjct: 160 LPEDKLFQADQNPVTASVILYPKPGSDISTNRKKIEGIQKLLKYAVEGLTDDNITIADNS 219 Query: 214 GKLLTANEMERN-----ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRS-AVVAELN 267 G +L ++ I+ K I+ ++ + E+ I L G D R ++ +++ Sbjct: 220 GNILNDFAGLKDFDRLSIIEKQQKIIAKLETQYEIKILNILQKTYGTDRVRDLSIKIDMD 279 Query: 268 MDTQQIREIVY--------DPDSK---------VERSIRLSKDAQRSETSQPESAVTVE- 309 M + + Y +P++ V RS + + PE VE Sbjct: 280 MSEKTAETVEYLPFQLRADNPETPYDESEVRASVTRSSETATTTYQGTGFNPEGPTGVEG 339 Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369 Q P D S ++ K +N EI ++ + ++ R +++V ++ Sbjct: 340 QTAPSYKDTSNLTGLSTQSIVK----TNEEIGSRRTSEIVSP-EMGRRTVSVNIDGQWRK 394 Query: 370 EVLG-----------RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 + D L + + V AA G ++ R D++++ ++ F Sbjct: 395 KKDANGNLVIKDGQIEREYIPIPDDELQKATQAVQAAIGYSALRNDSVSVLNIQFDRLAE 454 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 F F + + + A + L+ + + + R+ + + ++ + + Sbjct: 455 FEKED-NAYFRSVQRQRILLISLAGLALLLLIFIVY-------RIVSREIERRKRLREEE 506 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 +L + + + S ++ L++ IN+ + Sbjct: 507 LLRQHQLEREKALWEAEQAGMEVSMSVEE-MKRRELLENVINN-------------AREH 552 Query: 539 EERFAKILRKWARSE 553 E A +LR W E Sbjct: 553 PEDVALLLRTWLMEE 567 >gi|330940716|gb|EGH43724.1| flagellar MS-ring protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 251 Score = 159 bits (403), Expect = 9e-37, Method: Composition-based stats. Identities = 49/255 (19%), Positives = 102/255 (40%), Gaps = 30/255 (11%) Query: 309 EQNMPHVSDRKVPLPRSLENTDKK--EEQSNYEINTKSIATTHDNYKLERLSIAVVVNK- 365 + N + D P K + N+E++ T +L RLS+AVVV+ Sbjct: 18 DANGQQIMDPATGQPALAPYPADKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDM 77 Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV- 424 + G + + LA ++V A G ++ RGD++++ ++ F + Sbjct: 78 VKTNAANGEVSRAPWSAADLARFTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEAS 137 Query: 425 ---QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSIL 480 Q F DI+ + VG + + L LR L+NI + K+ E+ G Sbjct: 138 FYSQPWFWDIVKQ-----------AVGVIFILILVFGVLRPVLNNITNGKRKELAGFGGD 186 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 + + G + ND ++L + S + +++N+ + ++ + Sbjct: 187 AELGGMGGL-DGELSNDRVSLGGPQSILLPSPTEGYDAQLNA---------IKSLVAEDP 236 Query: 540 ERFAKILRKWARSEI 554 R A+++++W ++ Sbjct: 237 GRVAQVVKEWINTDE 251 >gi|325926453|ref|ZP_08187774.1| flagellar biosynthesis/type III secretory pathway lipoprotein [Xanthomonas perforans 91-118] gi|325543152|gb|EGD14594.1| flagellar biosynthesis/type III secretory pathway lipoprotein [Xanthomonas perforans 91-118] Length = 241 Score = 158 bits (399), Expect = 3e-36, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 88/229 (38%), Gaps = 8/229 (3%) Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385 K NYE++ T +++R+S+AV+++ G+ +Q + L Sbjct: 19 TPTESSKSATRNYELDRTLQHTRQPAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAEL 78 Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445 I +V A G ++ RGDT+++ + F+ + + V N L Sbjct: 79 TRIEGLVKQAVGFDAARGDTVSVMNAPFVREAVAGEEGPKWWEDP-------RVQNGLRL 131 Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505 LVG ++V L +R + + ++ D+ + Sbjct: 132 LVGAVVVLALLFGVVRPTLRQLTGVTAVKDKQGKAGKDGTPQSADVRMVDEDDDLMPRLE 191 Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRL-LHMIEINEERFAKILRKWARSE 553 +D ++ ++ I + + +RL ++ + +R A++++ W SE Sbjct: 192 EDTAQIGQDKKTPIALPDAYEERMRLAREAVKADSKRVAQVVKGWVASE 240 >gi|226313070|ref|YP_002772964.1| flagellar M-ring protein [Brevibacillus brevis NBRC 100599] gi|226096018|dbj|BAH44460.1| probable flagellar M-ring protein [Brevibacillus brevis NBRC 100599] Length = 220 Score = 157 bits (397), Expect = 4e-36, Method: Composition-based stats. Identities = 54/217 (24%), Positives = 103/217 (47%), Gaps = 10/217 (4%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYV-KLEVSDVNRI 63 D+ + + + IL ++ +L+ + L++ + + P Y LY KL ++ I Sbjct: 10 DRFTSKWNQFSKKQKWMILGISLFLLISLGLYI---YIASQPVYKPLYNQKLSEQEIGTI 66 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L + I ++I+ NG+SI VP M + LAAQG+PS + E+F ++ G+T Sbjct: 67 KQELEASQIPYQITGNGTSIEVPEKMAQDVIVDLAAQGIPSQAG-INAEIF--SSTLGVT 123 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAINP 182 ++ + AL+ E+ + ++ + G+ +A+V I +P + TASV++ Sbjct: 124 DRQFDVMKKEALQQELRKMLERVKGVRSAQVMITLPQESVWVTETPDTATASVIVDVEPG 183 Query: 183 --SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 K ++ LV+ +VP L M + + D L Sbjct: 184 TTLDQKQINSLYLLVSRSVPKLPMEAIAITDQYSNPL 220 >gi|119503664|ref|ZP_01625747.1| flagellar M-ring protein [marine gamma proteobacterium HTCC2080] gi|119460726|gb|EAW41818.1| flagellar M-ring protein [marine gamma proteobacterium HTCC2080] Length = 300 Score = 157 bits (397), Expect = 5e-36, Method: Composition-based stats. Identities = 58/316 (18%), Positives = 112/316 (35%), Gaps = 24/316 (7%) Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 I L LGV R+ V A+L+ + Y P++ + RS + ++D + Sbjct: 3 DRIESILEPILGVGAARAQVTADLDFTRVESTSEQYSPET-IMRSEQTTEDLTLKSIAAE 61 Query: 303 ESAVTVEQNMPHVSDR----KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 + + + P +D + ++ N+E++ KL RLS Sbjct: 62 GAPGQLTEQPPGAADPDDAENAVAQAPSPTRESRKATRNFEMDKTISHVREVPGKLRRLS 121 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 IAVV++ + + +QG+ L EI +V A G + RGDT+++ + F+ + Sbjct: 122 IAVVIDYVTDEDGNRTALEQGR----LDEITALVREAVGFDDARGDTVSVINSPFVVPEA 177 Query: 419 FNS-GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 + D + + + + L+ V R L + Sbjct: 178 LEEIPEPGLLEQDWIWQAGKGALALIALLMLIFTVI-------RPLIRYSTSYTPPPPPP 230 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 S P S G + +D +AL Q + QS +++ Sbjct: 231 SDGLPQLASPMGADGGINDDTVALSGPAQAALPGTTT-------PAYHQSIAMARNVVNE 283 Query: 538 NEERFAKILRKWARSE 553 R A +++ W ++ Sbjct: 284 QPARAAYVVKNWMATD 299 >gi|289670545|ref|ZP_06491620.1| flagellar MS-ring protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 230 Score = 157 bits (396), Expect = 6e-36, Method: Composition-based stats. Identities = 41/237 (17%), Positives = 98/237 (41%), Gaps = 10/237 (4%) Query: 319 KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ 378 + K NYE++ T +++R+S+AV+++ G+ +Q Sbjct: 1 GQATAAAAPTESSKSATRNYELDRTLQHTRQPAGRIKRVSVAVLLDNVPRPGAKGKMVEQ 60 Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFAT 438 + L I +V A G ++ RGDT+++ + F+ + + + Sbjct: 61 PLTAAELTRIEGLVKQAVGFDAARGDTVSVMNAPFVREAVAGEEGPKWWEDPRVQNGLRL 120 Query: 439 VINALVFLVGTLLVTFLGLHA-LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497 ++ A V L + F + LR+L + K+ + G + +P + ++ ++ Sbjct: 121 LVGA----VVVLALLFGVVRPTLRQLTGVTAIKEKQRKGGNDGTP----QSADVRMVDDE 172 Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL-LHMIEINEERFAKILRKWARSE 553 + L +D S ++ + I + + +R+ ++ + +R A++++ W SE Sbjct: 173 DSLLPHMGEDTASIGQDRKPAIALPDAYEERMRVAREAVKADSKRVAQVVKGWVASE 229 >gi|85706154|ref|ZP_01037249.1| flagellar M-ring protein FliF [Roseovarius sp. 217] gi|85669318|gb|EAQ24184.1| flagellar M-ring protein FliF [Roseovarius sp. 217] Length = 268 Score = 155 bits (393), Expect = 1e-35, Method: Composition-based stats. Identities = 64/270 (23%), Positives = 120/270 (44%), Gaps = 6/270 (2%) Query: 287 SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346 +I + + + ++ S VTV N+P S + E+ NYE+++ Sbjct: 2 TINTDTEERANTSNDQSSDVTVASNLPD--GDVAANGASASENTETRERINYEVSSTERE 59 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 T ++R+S+A+++N + G + + + L + +V AA GI+ RGD + Sbjct: 60 ITQQPGAIKRMSVAILINGLTTLDASGTPSFALRPEEELTALRDLVVAAVGIDEARGDVV 119 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHN 465 TI ++ F E + V+ S +D L+ T++ +LV + L++ L L R Sbjct: 120 TIRTLQF-EPIEPSGTLVEASLLDRLAIDVMTLVQSLVLAIVALILGLFVLRPILSRPPL 178 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 + ++ G + S P+S + G + ++ D S + + SR SRI+ + Sbjct: 179 MASSQIGRLAVASQPEIMPLSGVIDDGEIDESGLS-DVSEKALIDRSRQPLSRIDGP-PE 236 Query: 526 QSDLRLLHMIEINEERFAKILRKWARSEIE 555 +RL +I +E +ILR W E E Sbjct: 237 DPVVRLRSLIGQRQEETVEILRNWLEGEEE 266 >gi|226327718|ref|ZP_03803236.1| hypothetical protein PROPEN_01591 [Proteus penneri ATCC 35198] gi|225203422|gb|EEG85776.1| hypothetical protein PROPEN_01591 [Proteus penneri ATCC 35198] Length = 158 Score = 155 bits (392), Expect = 2e-35, Method: Composition-based stats. Identities = 44/110 (40%), Positives = 67/110 (60%), Gaps = 2/110 (1%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++ SP Y LY L D I L++ N+ +R+S NGS+I VP + V + R+ LA Sbjct: 46 LWLQSPDYKVLYSNLSDKDGGEIVTQLTQMNVPYRLSQNGSAIMVPDNQVHELRLKLAQA 105 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 GLP + +G+EL DK FG++ F ++I RALEGE+ARTI+++ + Sbjct: 106 GLPKGGA-AGFELLDKE-KFGISQFSEQINYQRALEGELARTIETLGPVQ 153 >gi|291484172|dbj|BAI85247.1| hypothetical protein BSNT_02643 [Bacillus subtilis subsp. natto BEST195] Length = 196 Score = 154 bits (389), Expect = 4e-35, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 79/158 (50%), Gaps = 4/158 (2%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + ++ +F+K+ + L + +++ S + I++ + F ++ LY L + Sbjct: 1 MQMKNKTSEFWKNRSKLQK---ILMVSALAAIIIIGIIISVFASNSKMAPLYKDLSAEEA 57 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +I L + +S+ G+ ISVP V ++ +AA+GLP + S Y F + F Sbjct: 58 GQIKKELDAKKVPNELSNGGTVISVPEDQVDSLKVQMAAEGLPKTGS-IDYSFFGQNAGF 116 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 GLT ++ +V+A + E++ I + GI ++V I + Sbjct: 117 GLTDNEFDMVKVKATQTELSNLINEMDGIKNSKVMITL 154 >gi|315301967|ref|ZP_07872962.1| flagellar M-ring protein FliF [Listeria ivanovii FSL F6-596] gi|313629662|gb|EFR97800.1| flagellar M-ring protein FliF [Listeria ivanovii FSL F6-596] Length = 380 Score = 149 bits (377), Expect = 8e-34, Method: Composition-based stats. Identities = 73/403 (18%), Positives = 148/403 (36%), Gaps = 52/403 (12%) Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM----ERNILGKSLSI 233 + + I+ V+AAVPN+ DV ++D+ +++ + + + I Sbjct: 5 KNNQTLTSEQVLGIQRTVSAAVPNVASEDVAIIDTKNGVISEADTSKEEGSSAYKNEVDI 64 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSK 292 AI ++ +I L++ +DNFR +N D + Y D KV + + S Sbjct: 65 QNAIGKNVKTDIEGTLSSIFALDNFRVNTSVTVNFDEIKQNTERYPNDGKVRSNQKDTST 124 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 D + T+ ES ++P+ ++ + ++K E +NYE+++ Sbjct: 125 DTSKGSTNTTESGTAANADVPNYTEENGGDTNTY-TSEKSSETTNYELDSTIQEIKKHP- 182 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS------------ 400 L + ++ V V++ L +AE K V + G+ Sbjct: 183 ALAKTNVVVWVDQQALNNNGV----------DMAEFTKAVGVSAGLTPNMATPEGAEEGA 232 Query: 401 --------RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452 + GD +TI + FL+NQ + + L+F + + Sbjct: 233 TPTFEGTFQNGD-VTIMPIQFLDNQTPVEKDAGKTPEPASKAWIWWLAGGLLFAIIAAGI 291 Query: 453 TFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS 512 + L+R +++A + E + P A+ +MP D+ + Sbjct: 292 IGYIIF-LKRKEQLEEALEPEE-----VDYIPAEEAI---VMPEDHPDFNFQTDAFHLSE 342 Query: 513 RNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 L++R + +L M + + R A +++KW E Sbjct: 343 PELKAR-----KESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 380 >gi|313634347|gb|EFS00945.1| flagellar M-ring protein FliF [Listeria seeligeri FSL N1-067] Length = 380 Score = 147 bits (372), Expect = 4e-33, Method: Composition-based stats. Identities = 72/403 (17%), Positives = 148/403 (36%), Gaps = 52/403 (12%) Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM----ERNILGKSLSI 233 + + I+ V+AAVPN+ DV ++D+ +++ + + + I Sbjct: 5 KNNQTLTSEQVLGIQRTVSAAVPNVASEDVAIIDTKNGVISEADTTKEEGSSAYKNEVDI 64 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSK 292 AI ++ +I L++ +DNFR +N D + Y D KV + + S Sbjct: 65 QNAIGKNVKTDIEGTLSSIFALDNFRVNTSVTVNFDEIKQNTERYPNDGKVRSNQKDTST 124 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 D + T+ ES ++P+ ++ + ++K E +NYE+++ Sbjct: 125 DTSKGSTNTTESGTAANADVPNYTEENGGDTNTY-TSEKSSETTNYELDSTIQEIKKHP- 182 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS------------ 400 L + ++ V V++ L +AE K V + G+ Sbjct: 183 ALAKTNVVVWVDQQSLNNNGV----------DMAEFTKAVGVSAGLTPNMATPEGAEEGA 232 Query: 401 --------RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452 + GD +TI + FL+NQ + + L+F + + Sbjct: 233 TPTFEGTFQNGD-VTIMPIQFLDNQAPVEKDTGKTPESASKAWIWWLAGGLLFAIIAAGI 291 Query: 453 TFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS 512 + L+R +++A + E + P A+ ++P D+ + Sbjct: 292 IGYIIF-LKRKEQLEEALEPEE-----VDYIPAEEAI---VVPEDHPDFNFQTDAFHLSE 342 Query: 513 RNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 L++R + +L M + + R A +++KW E Sbjct: 343 PELKAR-----KESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 380 >gi|313639030|gb|EFS04021.1| flagellar M-ring protein FliF [Listeria seeligeri FSL S4-171] Length = 380 Score = 146 bits (369), Expect = 8e-33, Method: Composition-based stats. Identities = 72/403 (17%), Positives = 148/403 (36%), Gaps = 52/403 (12%) Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM----ERNILGKSLSI 233 + + I+ V+AAVPN+ DV ++D+ +++ + + + I Sbjct: 5 KNNQTLTSEQVLGIQRTVSAAVPNVASEDVAIIDTKNGVISEADTTKEEGSSAYKNEVDI 64 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSK 292 AI ++ +I L++ +DNFR +N D + Y D KV + + S Sbjct: 65 QNAIGKNVKTDIEGTLSSIFALDNFRVNTSVTVNFDEIKQNTERYPNDGKVRSNQKDTST 124 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 D + T+ ES ++P+ ++ + ++K E +NYE+++ Sbjct: 125 DTSKGSTNTTESGTASNADVPNYTEENGGDTNTY-TSEKSSETTNYELDSTIQEIKKHP- 182 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS------------ 400 L + ++ V V++ L +AE K V + G+ Sbjct: 183 ALAKTNVVVWVDQQALNNNGV----------DMAEFTKAVGVSAGLTPNMATPEGAEEGA 232 Query: 401 --------RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452 + GD +TI + FL+NQ + + L+F + + Sbjct: 233 TPTFEGTFQNGD-VTIMPIQFLDNQAPVEKDTGKTPESASKAWIWWLAGGLLFAIIAAGI 291 Query: 453 TFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS 512 + L+R +++A + E + P A+ ++P D+ + Sbjct: 292 IGYIIF-LKRKEQLEEALEPEE-----VDYIPAEEAI---VVPEDHPDFNFQTDAFHLSE 342 Query: 513 RNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 L++R + +L M + + R A +++KW E Sbjct: 343 PELKAR-----KESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 380 >gi|1184298|gb|AAA87352.1| flagellar MS-ring protein [Borrelia burgdorferi] Length = 475 Score = 145 bits (366), Expect = 2e-32, Method: Composition-based stats. Identities = 73/498 (14%), Positives = 157/498 (31%), Gaps = 67/498 (13%) Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 R L + L + ++ + +T F + I R++ + + I ++ + A Sbjct: 1 MRAILVREELVPVHMDPWA--LFDIDRWTITDFERSINLRRSITRAVEQHIVALDDVDAV 58 Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAIN-----PSVYKSAEAIRHLVAA-AVPNLDMGD 206 V++VMP+ F++ ASV I + K E + L+ + + Sbjct: 59 SVNLVMPEKALFKESQEPVKASVRITPRPLVLIFITNRKKVEGLVKLIQPICHEGFESDN 118 Query: 207 VTVLDSTGKLLTANEMER-----NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR-S 260 + ++D++G +L ++ K + + + I+ AL+ L VD F + Sbjct: 119 IAIVDNSGTILNDFSNLDGIDRIDLAEKERKLKLKYEAMLRGEIDSALSKVLSVDRFMIA 178 Query: 261 AVVAELNMDTQQIREIVYDP------DSKV-----------ERSIRLSKDAQRSETSQPE 303 V +L+ + Y P D K S + K + + P Sbjct: 179 RVNVKLDTSKETTESKEYAPIELQSQDPKASYNTRKVSDSTIISSQTQKKEYQGQGYSPW 238 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 E N P + ++ +E N +N K + + ++ +S+ + V Sbjct: 239 GPPGQEGNTPPEYQDLSDITG---KYNESQEIKNVALNEKKSTSEKEPARIVGVSLGIFV 295 Query: 364 NKGR-----------LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 + + + + + + I ++ ++ RGD+IT+ ++ Sbjct: 296 DGIWNFVYDEKGDFVIENGMRKREYKPMALEEIKNIEDVLQSSFEYKPERGDSITVRNIS 355 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F F + F ++F + + + L+ + F I + Sbjct: 356 FDRMNEFREID-ENYFASERFKYFLFIASIVFSLLILVFTIFF---------AISRELER 405 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 + LM + LQS Sbjct: 406 RRRLREEELAKQAHLRRQQALMDGGDDIGVDDVVGGIREGDELQSNAEL----------- 454 Query: 533 HMIEINEERFAKILRKWA 550 + E AK++R W Sbjct: 455 -LAREKPEDVAKLIRTWL 471 >gi|260438808|ref|ZP_05792624.1| flagellar M-ring protein FliF [Butyrivibrio crossotus DSM 2876] gi|292808797|gb|EFF68002.1| flagellar M-ring protein FliF [Butyrivibrio crossotus DSM 2876] Length = 534 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 86/578 (14%), Positives = 202/578 (34%), Gaps = 80/578 (13%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 AI +++ F+ R ++ ++ +V I++ + + L ++V Sbjct: 7 AIWEKIKNFWLKFNKKQR---ILFVTIFVVIIVVIIVLSKVIGKKDMVKLRACSNETEVV 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK-VNSF 120 I L++ NI + + + I V S +A++ L + + S++GY L D +S Sbjct: 64 EIRNLLNDNNISATVDEYNN-IFVDDSDYVEAKLVLGSNNI----SSAGYTLDDAVSSSL 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM-GSFRKIGARPTASVMIRA 179 T + + LE + + ++S+ I +ARV+I P+ S + ++ Sbjct: 119 STTETVMKEKYTAYLESKFKQDLESMDAIKSARVNISYPETGNSIFSETQDAKITAVLDL 178 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAI 237 + AEAI L+A V N + V ++DS +L + + + + + Sbjct: 179 KKELSDEQAEAIGLLLATNVGNDNTNSVIIVDSQSNVLYSGNKANSSFTSNSTQKVKAML 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 ++ I + + ++ + + ++N D ++ + Y + + S Sbjct: 239 ENAIIKGAEDLIYSTRLYNDVQIMINLDVNFDNVEVVDHKYIAPDGTDNGLPTHSYVINS 298 Query: 298 ET--SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEI--NTKSIATTHDNYK 353 E + E N + + + K S Y+ N T+ + Sbjct: 299 EGQLATAGGNPGTESNDSDTDYDII----NSDGKSSKYTLSKYDWVQNEVITTTSKTPGE 354 Query: 354 L--ERLSIAVV-----------------VNKGRLTEVLGRSADQGKIDSYLAEINKIVSA 394 + + S+A+V ++ E +++ + I V+ Sbjct: 355 VNLKNSSMAIVCIKNTILTEEEAEEQGLLDDMTWEEYKQANSEPVETTVQ-DNILNAVAT 413 Query: 395 ATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTF 454 +GI + I +M F + ++ +S VI ++ ++ ++ F Sbjct: 414 GSGIAAGNVSIIAYNTMTFFDKEVTSSSNP------------WFVIQIILAVLIAGVLIF 461 Query: 455 LGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRN 514 + + + R P++ T + +++ + Q + Sbjct: 462 IIIRSTR----------------------PVAVEETEPELSVEDMLATTKQQQPPVEEID 499 Query: 515 LQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 LQ + + + + ++ N E A +LR W Sbjct: 500 LQDKSETRKA------IEKFVDENPEAVALLLRNWLNE 531 >gi|87307391|ref|ZP_01089536.1| probable polar flagellar M-ring protein FliF [Blastopirellula marina DSM 3645] gi|87290131|gb|EAQ82020.1| probable polar flagellar M-ring protein FliF [Blastopirellula marina DSM 3645] Length = 546 Score = 142 bits (359), Expect = 1e-31, Method: Composition-based stats. Identities = 95/572 (16%), Positives = 190/572 (33%), Gaps = 58/572 (10%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNL-YVKLEVSDVNR 62 +Q+ F S T R +L VI+ F L ++ +D Sbjct: 8 FEQIKDLFFSMTPGSRIIAGLLIVVIVASFAFLFQGGMF--EHDAALLAGAAVDPADQKA 65 Query: 63 ISVALSEANID-FRISDNGSSISVPSSMVGKARIHLAAQG-LPSSSSNSGYELFDKVNSF 120 + A + +D +RI GS I +P + + + +P S + D N F Sbjct: 66 VLAAFAGEGLDDYRIE--GSQIYIPRAKRAEYVAAMVKHNAIPPEFHESMEDAVDNANPF 123 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 + + + A E ++A ++ + GI A VH + D G F + TASV++R + Sbjct: 124 -ESEQHRSDRQKIAKEKDLALVLRKMRGIEFASVHYDVEDKGGFPRRKVY-TASVVVRPL 181 Query: 181 NPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQ 238 +IR+ VA ++ L V+V D + + + E + Q + Sbjct: 182 GSEEIDQALVRSIRNYVAYSIAGLSSEHVSVTDLNSRRTYSGDTENPAEDAYAARKQFFE 241 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 + + I AL D V EL+ Q E + + K + S+ Sbjct: 242 NSWQDKIAAALNYI---DGVNVTVNVELDPKMNQREERLEHGARPIALLTSAQKRTESSK 298 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 + + P+ P + ++ E++ + + + + +++ Sbjct: 299 VPKEGGRPGLAAQAPNQQAELTTAPARESSMEESSEETASVTDKTLMLSETASLTPQQVR 358 Query: 359 IAVVVNKGRL-----TEVLGRSADQGKIDSY--LAEINKIVSAATG-------INSRRGD 404 + V V + + Q L +I + V + GD Sbjct: 359 VVVTVPQDYYAGIWNKQNPPALGAQPTTPDAGVLKKIEEEVKKSIESQVVTLLPPQPPGD 418 Query: 405 ----TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460 + +TS+ + + + + L ++ TV ++G L L L ++ Sbjct: 419 DPYPQVHVTSVTRTDQPTLAEPALADTAILWLGANWQTV-----AMIGVGLFALLMLRSM 473 Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520 R S P I +++ P + D+ + R ++ N Sbjct: 474 VR---------------SQPDEPKIDNSIRLATPPQEEEEDDAGDMSGMLKKRFTKNSPN 518 Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 L+ M+ + + A IL+ W + Sbjct: 519 LKDE------LIEMVREDPDTAAGILKNWIGA 544 >gi|171915741|ref|ZP_02931211.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Verrucomicrobium spinosum DSM 4136] Length = 248 Score = 139 bits (351), Expect = 9e-31, Method: Composition-based stats. Identities = 44/182 (24%), Positives = 80/182 (43%), Gaps = 5/182 (2%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSM 89 I L + V+ L+ L + N + AL E ++ + + ++ V S Sbjct: 7 ITLCLCGLLLVSCAKQVPLFSDLREEEANEVMAALMERDVACTKTPGKEDKWALQVKSED 66 Query: 90 VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149 A L A GLP S E+F K + + + + + AL E++ T I G+ Sbjct: 67 FPFAMQTLQAMGLPRQSFQRMGEIFQK-SGLVSSPTEERVRFIYALSQELSETFMKIDGV 125 Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINP-SVYKSAEAIRHLVAAAVPNLDMGDVT 208 VAARVHI +PD + +A+V I+ ++ + + +++LV +V L +V Sbjct: 126 VAARVHIALPDTDPLAEETNPASAAVFIKCRPGYNLANNTQDLKNLVTRSVEGLKPENVE 185 Query: 209 VL 210 ++ Sbjct: 186 LV 187 >gi|170738287|ref|YP_001779547.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Burkholderia cenocepacia MC0-3] gi|169820475|gb|ACA95057.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia cenocepacia MC0-3] Length = 287 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 89/206 (43%), Gaps = 10/206 (4%) Query: 19 RTRILILASV-ILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS 77 R RI+ ASV V + + + LY L D N I AL +A ID + Sbjct: 4 RIRIVGRASVHACVVLCVALCIALAGCK---QELYGNLSEQDCNEIVAALLQAGIDAKKE 60 Query: 78 --DNGSSIS--VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 D G + S V + + +A L GLP+ + +LF K T + + + Sbjct: 61 SADGGKTWSAKVDDAHIVQAMNVLREHGLPAHKYDDLGDLFKKD-GLVSTPTEERVRFIY 119 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIR 192 + E+++T+ I G++ ARVHIV+PD +ASV I+ + + E I+ Sbjct: 120 GVSQELSKTLSQIDGVMVARVHIVLPDNDPLAMHVKPSSASVFIKYLPTANLAMIEPQIK 179 Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLT 218 +LV +V L V++ G L Sbjct: 180 NLVVHSVEGLSYDKVSLTAVAGSPLD 205 >gi|331009141|gb|EGH89197.1| type III secretion component protein HrcJ [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 444 Score = 138 bits (347), Expect = 3e-30, Method: Composition-based stats. Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 4/162 (2%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 +L+ L D N + L++ +ID R + G ++V +S + +A L A GLP S Sbjct: 23 TDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQS 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 S ++F K T + + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 83 RASLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141 Query: 167 IGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDV 207 +A+V I+ S I+ +VA+++P + Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSAQSA 183 >gi|82795289|gb|ABB91658.1| type III secretion protein HrcJ [Pseudomonas syringae pv. tagetis] Length = 268 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 4/182 (2%) Query: 29 ILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVP 86 L +L M +L+ L D N + L++ +ID R + G ++V Sbjct: 3 FLSAGLLLMCILMLGGCSDDTDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVA 62 Query: 87 SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146 +S + +A L A GLP S S E+F K T + + AL E+ T+ I Sbjct: 63 TSDMNRAVRVLDAAGLPRHSRTSLGEIFKKEGVI-STPLEERARYIYALSQELEATLSQI 121 Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMG 205 G++ ARVH+V+P+ + + +A+V I+ S I+ +VA+++P + Sbjct: 122 DGVIVARVHVVLPERIAPGEPVQPASAAVFIKHSASLDPDSVRGRIQQMVASSIPGMSTQ 181 Query: 206 DV 207 Sbjct: 182 SA 183 >gi|160880849|ref|YP_001559817.1| flagellar M-ring protein FliF [Clostridium phytofermentans ISDg] gi|160429515|gb|ABX43078.1| flagellar M-ring protein FliF [Clostridium phytofermentans ISDg] Length = 531 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 91/568 (16%), Positives = 185/568 (32%), Gaps = 71/568 (12%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 +LL+ +K + + I+ + S I + F + Y L + ++ Sbjct: 11 RLLEIWKKYSKKQKIIIISVVSS---VICALLLLIFLLGRTEYVELIKLEDTKTASQAID 67 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L E I +++ D+G ++ V +S +A++ +A + S + S +L + S T++ Sbjct: 68 ILKENGIAYQLKDDGVTVLVDNSKKTEAKLLIADSEIASKAKLSLEQLLNNDMS--TTNY 125 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVH-IVMPDMGSFRKIGARPTASVMIRAINPSV 184 ++ +G++ ++ GI AR+ + S + + S+ + + Sbjct: 126 DKQTKLHLYYQGDLEELLKKQEGIDDARISYLPSDKRSSILEQEKEISCSIFLTINSKFK 185 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIE 242 SAEAI VA ++ N V V+D G LL + E K+L QA+ + Sbjct: 186 KSSAEAIAITVANSLGNETTNKVKVIDQYGNLLYNGPEDEESEYTNKNLEFRQAVLGDYT 245 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 + + G D + ++N D Y +E+ + S SE Sbjct: 246 ERVVR-FGLMNGFDYVEPSFALDINFDKTTEEIREYFAGEGLEQGLYQSYQKISSENQGS 304 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 + + + E +Y + K T + + V Sbjct: 305 NGD--IPGTDSNTDTDYYIQTEKSGKSSYDELNISYLPSEKLTKTLKGWGIVNVDTSKVA 362 Query: 363 VNKGRLTEVLGRSAD------------------QGKIDSYLAEINKIVSAATGINSRRGD 404 + R+ ++ + K E + + ATG+N Sbjct: 363 IALKRVKDIKEEDLKLLGLLNGTTFEEYVLNNSEPKQLDVSKEYYTLFANATGLNEN--- 419 Query: 405 TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 ++ + ++ N S D+ + +I A + L + V F G+ + Sbjct: 420 -----NISLIMWEVPNFIPTPKS--DVNWQLILEIILAALILGLLIFVVFRGMAPV---- 468 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 + P S +N +LD I Sbjct: 469 -------------EVTEIEPELSVEQLLATTKENQSLDD---------------IEFSEK 500 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARS 552 ++ + ++ N E A +LR W Sbjct: 501 SETRRMIEKFVDENPEAVANLLRNWLTD 528 >gi|330937050|gb|EGH41134.1| type III secretion protein HrcJ [Pseudomonas syringae pv. pisi str. 1704B] Length = 229 Score = 134 bits (337), Expect = 4e-29, Method: Composition-based stats. Identities = 44/182 (24%), Positives = 80/182 (43%), Gaps = 4/182 (2%) Query: 29 ILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVP 86 L +L + +L+ L D N + L++ +ID R + G ++V Sbjct: 3 FLSAGLLLICMVLLGGCSDETDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVA 62 Query: 87 SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146 +S + +A L A GLP S S ++F K T + + AL E+ T+ I Sbjct: 63 TSDMNRAVRVLNAAGLPRQSRASLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQI 121 Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMG 205 G++ ARVH+V+P+ + + +A+V I+ S I+ +VA+++P + Sbjct: 122 DGVIVARVHVVLPERIAPGEPVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQ 181 Query: 206 DV 207 Sbjct: 182 SA 183 >gi|296103639|ref|YP_003613785.1| flagellar M-ring protein FliF [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058098|gb|ADF62836.1| flagellar M-ring protein FliF [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 268 Score = 134 bits (337), Expect = 4e-29, Method: Composition-based stats. Identities = 49/265 (18%), Positives = 98/265 (36%), Gaps = 35/265 (13%) Query: 299 TSQPESAVTVEQNMP----------HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 ++ P + T P + + ++ +E +N+E++ I T Sbjct: 27 SNTPPAPATAPLTQPLNTPADDKKEKTTSNSANREPAQPYNNRSDETTNFEVDRTLIHTK 86 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 + +++RLS+AVV+N E ++ L IN +V A G N+ RGD++ I Sbjct: 87 SNAGRIQRLSVAVVINHLPQGE---EGKPGPISEAELTRINALVKEAIGFNASRGDSVNI 143 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 + F N + D R +A ++ +LV ++ + R+L Sbjct: 144 LNSAF--NGVVEEPVPPFWEQD---RFYALLMAIARYLVIAIIAWVMW----RKLVQPAW 194 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 + E + + IA + + R Q R+++ ++ Q Sbjct: 195 IRHQETTLRRLEMEKEAREEE---------IAAKKRAAEKINRDR-AQQRVDTELNGQ-- 242 Query: 529 LRLLHMIEINEERFAKILRKWARSE 553 +L + E A ++R+W E Sbjct: 243 -QLRELAEQEPRVIALVIRQWMSKE 266 >gi|84502358|ref|ZP_01000494.1| flagellar M-ring protein [Oceanicola batsensis HTCC2597] gi|84389170|gb|EAQ01967.1| flagellar M-ring protein [Oceanicola batsensis HTCC2597] Length = 246 Score = 134 bits (337), Expect = 4e-29, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 22/244 (9%) Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINK 390 K +E NYEI T + +++R+S+AV+VN + G A + + + L +N+ Sbjct: 1 KTDEVVNYEIGNTQSETVREPGEIQRISVAVLVNGIYNIQDNGEVAYEERSEEELQRLNQ 60 Query: 391 IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL 450 +V AA G + +RGD++++ S+ F++ + V SF+ IL + ++ A+ L Sbjct: 61 LVQAAIGFDEQRGDSVSVDSLRFMDYSMDVGEPVSTSFVQILKDNMMAILRAVFALAVIA 120 Query: 451 LVTFLGLHALR-----------------RLHNIDDAKKGEVGGKSILSP---PPISSAVT 490 + G+ L L + +GE+ +P P A Sbjct: 121 AILVFGVRPLVARALPERTEGEDQSDVPALPGGEAQAEGELAADGDRAPQGLPAPQQARP 180 Query: 491 TGLMPNDNIALDSSNQDIFSHSRNL--QSRINSYVSKQSDLRLLHMIEINEERFAKILRK 548 ++ + +L +N V K + ++E + K+++ Sbjct: 181 RRAGSGGAVSGTVLEPISMAGPDDLVTLGAVNGGVHKGWINTVSGLVEHQPDDSLKVVKT 240 Query: 549 WARS 552 W Sbjct: 241 WLAE 244 >gi|330975997|gb|EGH76063.1| flagellar MS-ring protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 153 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 37/130 (28%), Positives = 61/130 (46%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 + F ++ + + R + L + + + A + P Y LY L D +I L Sbjct: 24 MSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + ANI++ + N ++ V S V +ARI LA G + +N G+E+ DK G + FM+ Sbjct: 84 TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGGVQNDANIGFEILDKDQGLGTSQFME 143 Query: 128 EITRVRALEG 137 R LEG Sbjct: 144 ATRYRRGLEG 153 >gi|289678028|ref|ZP_06498918.1| type III secretion protein HrcJ [Pseudomonas syringae pv. syringae FF5] gi|330895842|gb|EGH28130.1| type III secretion protein HrcJ [Pseudomonas syringae pv. japonica str. M301072PT] Length = 268 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 44/182 (24%), Positives = 80/182 (43%), Gaps = 4/182 (2%) Query: 29 ILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVP 86 L +L + +L+ L D N + L++ +ID R + G ++V Sbjct: 3 FLSAGLLLICMVLLGGCSDETDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVA 62 Query: 87 SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146 +S + +A L A GLP S S ++F K T + + AL E+ T+ I Sbjct: 63 TSDMNRAVRVLNAAGLPRQSRASLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQI 121 Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMG 205 G++ ARVH+V+P+ + + +A+V I+ S I+ +VA+++P + Sbjct: 122 DGVIVARVHVVLPERIAPGEPVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQ 181 Query: 206 DV 207 Sbjct: 182 SA 183 >gi|330975852|gb|EGH75918.1| type III secretion protein HrcJ [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 268 Score = 133 bits (336), Expect = 5e-29, Method: Composition-based stats. Identities = 44/182 (24%), Positives = 80/182 (43%), Gaps = 4/182 (2%) Query: 29 ILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVP 86 L +L + +L+ L D N + L++ +ID R + G ++V Sbjct: 3 FLSAGLLLICMVLLGGCSDETDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVA 62 Query: 87 SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146 +S + +A L A GLP S S ++F K T + + AL E+ T+ I Sbjct: 63 TSDMNRAVRVLNAAGLPRQSRASLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQI 121 Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMG 205 G++ ARVH+V+P+ + + +A+V I+ S I+ +VA+++P + Sbjct: 122 DGVIVARVHVVLPERIAPGEPVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQ 181 Query: 206 DV 207 Sbjct: 182 SA 183 >gi|66044446|ref|YP_234287.1| type III secretion protein HrcJ [Pseudomonas syringae pv. syringae B728a] gi|63255153|gb|AAY36249.1| type III secretion protein HrcJ [Pseudomonas syringae pv. syringae B728a] Length = 268 Score = 133 bits (336), Expect = 5e-29, Method: Composition-based stats. Identities = 44/182 (24%), Positives = 80/182 (43%), Gaps = 4/182 (2%) Query: 29 ILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVP 86 L +L + +L+ L D N + L++ +ID R + G ++V Sbjct: 3 FLSAGLLLICMVLLGGCSDETDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVA 62 Query: 87 SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146 +S + +A L A GLP S S ++F K T + + AL E+ T+ I Sbjct: 63 TSDMNRAVRVLNAAGLPRQSRASLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQI 121 Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMG 205 G++ ARVH+V+P+ + + +A+V I+ S I+ +VA+++P + Sbjct: 122 DGVIVARVHVVLPERIAPGEPVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQ 181 Query: 206 DV 207 Sbjct: 182 SA 183 >gi|330950834|gb|EGH51094.1| type III secretion protein HrcJ [Pseudomonas syringae Cit 7] Length = 268 Score = 133 bits (336), Expect = 5e-29, Method: Composition-based stats. Identities = 44/180 (24%), Positives = 80/180 (44%), Gaps = 4/180 (2%) Query: 29 ILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVP 86 L +L + +L+ L D N + L++ +ID R + G ++V Sbjct: 3 FLSAGLLLICMVLLGGCSDETDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVA 62 Query: 87 SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146 +S + +A L A GLP S S ++F K T + + AL E+ T+ I Sbjct: 63 TSDMNRAVRVLNAAGLPRQSRASLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQI 121 Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMG 205 G++ ARVH+V+P+ + + +A+V I+ S I+ +VA+++P + Sbjct: 122 DGVIVARVHVVLPERIAPGEPVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQ 181 >gi|818896|gb|AAB05080.1| HrcJ [Pseudomonas syringae pv. syringae] Length = 268 Score = 133 bits (336), Expect = 5e-29, Method: Composition-based stats. Identities = 44/180 (24%), Positives = 80/180 (44%), Gaps = 4/180 (2%) Query: 29 ILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVP 86 L +L + +L+ L D N + L++ +ID R + G ++V Sbjct: 3 FLSAGLLLICMVLLGGCSDETDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVA 62 Query: 87 SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146 +S + +A L A GLP S S ++F K T + + AL E+ T+ I Sbjct: 63 TSDMNRAVRVLNAAGLPRQSRASLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQI 121 Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMG 205 G++ ARVH+V+P+ + + +A+V I+ S I+ +VA+++P + Sbjct: 122 DGVIVARVHVVLPERIAPGEPVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQ 181 >gi|332526232|ref|ZP_08402363.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Rubrivivax benzoatilyticus JA2] gi|332110068|gb|EGJ10696.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Rubrivivax benzoatilyticus JA2] Length = 239 Score = 133 bits (336), Expect = 6e-29, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 5/166 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDF---RISDNGSSISVPSSMVGKARIHLAAQGLPSS 105 + LY +L+ + N + L+ A ID R+ ++ V +A L A G P Sbjct: 33 EELYAQLDEREANEMVALLTHAGIDAAKQRVDGGQFALRVGGGEFARAVQVLHAAGYPRE 92 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 S +F K F T + + AL E+A T+Q+I G+V ARVH+ +P+ F Sbjct: 93 GHESLGTMF-KKEGFVTTQLEERARFMHALSQELAGTLQNIDGVVLARVHLAVPEKRRFA 151 Query: 166 KIGARPTASVMIRAINP-SVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 + A+V ++ + +I+ LV A+ L VTV+ Sbjct: 152 EKPEPSAAAVFLKVRPGVDLAPQIGSIKALVVNAIEGLPYEQVTVV 197 >gi|330969118|gb|EGH69184.1| type III secretion protein HrcJ [Pseudomonas syringae pv. aceris str. M302273PT] Length = 268 Score = 133 bits (336), Expect = 6e-29, Method: Composition-based stats. Identities = 44/180 (24%), Positives = 80/180 (44%), Gaps = 4/180 (2%) Query: 29 ILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVP 86 L +L + +L+ L D N + L++ +ID R + G ++V Sbjct: 3 FLSAGLLLICMVLLGGCSDETDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVA 62 Query: 87 SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146 +S + +A L A GLP S S ++F K T + + AL E+ T+ I Sbjct: 63 TSDMNRAVRVLNAAGLPRQSRASLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQI 121 Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMG 205 G++ ARVH+V+P+ + + +A+V I+ S I+ +VA+++P + Sbjct: 122 DGVIVARVHVVLPERIAPGEPVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQ 181 >gi|254706489|ref|ZP_05168317.1| flagellar MS-ring protein [Brucella pinnipedialis M163/99/10] Length = 207 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 50/196 (25%), Positives = 82/196 (41%), Gaps = 5/196 (2%) Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVS 427 L +D + +I +V+ A G+N+ RGD I +T+++FL+ + V Sbjct: 3 LQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGADMEPVSAP 62 Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA--KKGEVGGKSILSPPPI 485 + D L R + NAL L L+ + GL L R N+ A + + +P I Sbjct: 63 WTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAGEVATPNFI 122 Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545 A + G I ++ D S S + + + LRL MIE++EER A + Sbjct: 123 GGAESVGEGVQAVIGGPAAYADQMKTS---LSDLRQRMRMPAKLRLEQMIEMDEERVAAV 179 Query: 546 LRKWARSEIEDRYTQH 561 L++W R Sbjct: 180 LKQWIHETASGREADP 195 >gi|261313943|ref|ZP_05953140.1| flagellar MS-ring protein FliF [Brucella pinnipedialis M163/99/10] gi|261302969|gb|EEY06466.1| flagellar MS-ring protein FliF [Brucella pinnipedialis M163/99/10] Length = 192 Score = 131 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 49/183 (26%), Positives = 81/183 (44%), Gaps = 5/183 (2%) Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440 +D + +I +V+ A G+N+ RGD I +T+++FL+ + V + D L R + Sbjct: 1 MDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGADMEPVSAPWTDTLLRQSGSYA 60 Query: 441 NALVFLVGTLLVTFLGLHALRRLHNIDDA--KKGEVGGKSILSPPPISSAVTTGLMPNDN 498 NAL L L+ + GL L R N+ A + + +P I A + G Sbjct: 61 NALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAGEVATPNFIGGAESVGEGVQAV 120 Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIEDRY 558 I ++ D S S + + + LRL MIE++EER A +L++W R Sbjct: 121 IGGPAAYADQMKTS---LSDLRQRMRMPAKLRLEQMIEMDEERVAAVLKQWIHETASGRE 177 Query: 559 TQH 561 Sbjct: 178 ADP 180 >gi|260775676|ref|ZP_05884572.1| type III secretion bridge between inner and outermembrane lipoprotein (yscJ,HrcJ,EscJ PscJ) [Vibrio coralliilyticus ATCC BAA-450] gi|260608092|gb|EEX34261.1| type III secretion bridge between inner and outermembrane lipoprotein (yscJ,HrcJ,EscJ PscJ) [Vibrio coralliilyticus ATCC BAA-450] Length = 268 Score = 130 bits (326), Expect = 7e-28, Method: Composition-based stats. Identities = 55/192 (28%), Positives = 89/192 (46%), Gaps = 15/192 (7%) Query: 30 LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPS 87 L + + + L L D N + ALS+ NI R+ NG +I V S Sbjct: 10 LTRVFMGILLVLLTGCSEQVELNSGLLERDANAVLSALSDKNISAEKRMDKNGVTILVNS 69 Query: 88 SMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSIS 147 + +GKA L+ GLP + +S +F T ++ + AL E+ T+ I Sbjct: 70 NQMGKALRVLSIAGLPKAPHDSLGSMFPNDGVI-STPLEEQARYIHALSQELEYTLSEID 128 Query: 148 GIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNLDM 204 G+V ARVH+V+P+ + + + +ASV I+ ++P V K I+ LVA ++P L Sbjct: 129 GVVLARVHVVLPEKIAPGEPISPASASVFIKHQTTLDPDVIK--NRIQRLVAGSIPGL-- 184 Query: 205 GDVTVLDSTGKL 216 +D+ KL Sbjct: 185 -----IDNKNKL 191 >gi|307944360|ref|ZP_07659701.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Roseibium sp. TrichSKD4] gi|307772706|gb|EFO31926.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Roseibium sp. TrichSKD4] Length = 259 Score = 130 bits (326), Expect = 9e-28, Method: Composition-based stats. Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 6/188 (3%) Query: 26 ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD--NGSSI 83 AS +L +L LY L + N+I+ L +A I +G SI Sbjct: 4 ASAVLRSAILLACLFILAGCK--VELYSNLSEQEANQIAATLIDAGISVDKEKLRDGVSI 61 Query: 84 SVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTI 143 V S A L GLP+ + E+F K + + ++ V AL E+ TI Sbjct: 62 LVADSEFANAVNLLNENGLPARRYQNMGEIFQK-SGIVSSPTEEKARFVFALSQELENTI 120 Query: 144 QSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS-VYKSAEAIRHLVAAAVPNL 202 I G+++ARVH+V+P+ + +AS+ +R + V K I+ LV+ ++ L Sbjct: 121 AEIDGVLSARVHVVLPEEDILGRQTEPSSASLFVRHVEGVPVEKLIPRIKMLVSNSIEGL 180 Query: 203 DMGDVTVL 210 V+V+ Sbjct: 181 VYERVSVV 188 >gi|289623695|ref|ZP_06456649.1| type III secretion component protein HrcJ [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647631|ref|ZP_06478974.1| type III secretion component protein HrcJ [Pseudomonas syringae pv. aesculi str. 2250] gi|330871299|gb|EGH06008.1| type III secretion component protein HrcJ [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 268 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 4/162 (2%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 +L+ L D N + L++ +ID R + G ++V +S + +A L A GLP S Sbjct: 23 TDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQS 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 S ++F K T + + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 83 RASLGDIFKKEGVI-STPLEERARYIYALSQELESTLSQIDGVIVARVHVVLPERIAPGE 141 Query: 167 IGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDV 207 +A+V I+ S I+ +VA+++P + Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSAQSA 183 >gi|333003034|gb|EGK22588.1| flagellar M-ring protein domain protein [Shigella flexneri VA-6] Length = 240 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 44/264 (16%), Positives = 88/264 (33%), Gaps = 32/264 (12%) Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTD-----KKEEQSNYEINTKSIATTHDNYK 353 ++QP A + P + S + ++ E SNYE++ T + Sbjct: 2 SNQPAPANNAPISTPPTNQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGD 61 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 ++RLS+AVVVN L + + + +I + A G + +RGD++ + + F Sbjct: 62 VQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEALTREAMGFSEKRGDSLNVVNSPF 117 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 + + G + + L A R L + A Sbjct: 118 -NSSDESGGALPFWQQQVFIDQL--------------------LAAGRWLLVLLVAWLLW 156 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL--RL 531 + T ++ + + S LQ R + + R+ Sbjct: 157 RKAVRPQLTRRAEAVKTVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQRLGAEVMSQRI 216 Query: 532 LHMIEINEERFAKILRKWARSEIE 555 M + + A ++R+W ++ E Sbjct: 217 REMSDNDPRVVALVIRQWINNDHE 240 >gi|329889303|ref|ZP_08267646.1| hypothetical protein BDIM_09830 [Brevundimonas diminuta ATCC 11568] gi|328844604|gb|EGF94168.1| hypothetical protein BDIM_09830 [Brevundimonas diminuta ATCC 11568] Length = 240 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 71/165 (43%), Gaps = 4/165 (2%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDNG--SSISVPSSMVGKARIHLAAQGLPSSS 106 LY L D N + L +D + +G + +A L +G P + Sbjct: 22 QELYGGLTERDANEMVAVLKAQGLDASKTRDGDNWVLKADRGDFSRAVALLHDRGYPRQN 81 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 S E+F K F + Q + + AL+ E+ +TI SI G+V ARVHI +P+ + Sbjct: 82 FASMGEVFQKE-GFVSSPMEQRMRMMYALQQELGQTISSIDGVVQARVHIAVPESDPLAQ 140 Query: 167 IGARPTASVMIRAINP-SVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 +ASV I+ + +I+ LV ++ L VTV+ Sbjct: 141 EKPPSSASVFIKHRPDYDISAQTGSIKALVVNSIEGLPYDKVTVV 185 >gi|333004042|gb|EGK23576.1| flagellar M-ring protein domain protein [Shigella flexneri K-272] gi|333017815|gb|EGK37122.1| flagellar M-ring protein domain protein [Shigella flexneri K-227] Length = 240 Score = 128 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 44/264 (16%), Positives = 88/264 (33%), Gaps = 32/264 (12%) Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTD-----KKEEQSNYEINTKSIATTHDNYK 353 ++QP A + P + S + ++ E SNYE++ T + Sbjct: 2 SNQPAPANNAPISTPPTNQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGD 61 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 ++RLS+AVVVN L + + + +I + A G + +RGD++ + + F Sbjct: 62 VQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEALTREAMGFSEKRGDSLNVVNSPF 117 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 + + G + + L A R L + A Sbjct: 118 -NSSNESGGALPFWQQQVFIDQL--------------------LAAGRWLLVLLVAWLLW 156 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL--RL 531 + T ++ + + S LQ R + + R+ Sbjct: 157 RKAVRPQLTRRAEAVKTVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQRLGAEVMSQRI 216 Query: 532 LHMIEINEERFAKILRKWARSEIE 555 M + + A ++R+W ++ E Sbjct: 217 REMSDNDPRVVALVIRQWINNDHE 240 >gi|42562013|gb|AAS20455.1| HrcJ [Pseudomonas syringae pv. phaseolicola] Length = 268 Score = 128 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 4/162 (2%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 +L+ L D N + L++ +ID R + G ++V +S + +A L A GLP S Sbjct: 23 TDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQS 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 S ++F K T + + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 83 RASLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141 Query: 167 IGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDV 207 +A+V I+ S I+ +VA+++P + Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSAQSA 183 >gi|9800448|gb|AAF99294.1|AF268940_4 HrcJ [Pseudomonas syringae pv. phaseolicola] Length = 268 Score = 128 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 4/162 (2%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 +L+ L D N + L++ +ID R + G ++V +S + +A L A GLP S Sbjct: 23 TDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQS 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 S ++F K T + + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 83 RASLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141 Query: 167 IGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDV 207 +A+V I+ S I+ +VA+++P + Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSAQSA 183 >gi|71734078|ref|YP_273534.1| type III secretion component protein HrcJ [Pseudomonas syringae pv. phaseolicola 1448A] gi|37528863|gb|AAQ92361.1| HrcJ [Pseudomonas syringae] gi|71554631|gb|AAZ33842.1| type III secretion component protein HrcJ [Pseudomonas syringae pv. phaseolicola 1448A] gi|320322966|gb|EFW79056.1| type III secretion component protein HrcJ [Pseudomonas syringae pv. glycinea str. B076] gi|320329911|gb|EFW85899.1| type III secretion component protein HrcJ [Pseudomonas syringae pv. glycinea str. race 4] gi|330874585|gb|EGH08734.1| type III secretion component protein HrcJ [Pseudomonas syringae pv. glycinea str. race 4] Length = 268 Score = 128 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 4/162 (2%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 +L+ L D N + L++ +ID R + G ++V +S + +A L A GLP S Sbjct: 23 TDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQS 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 S ++F K T + + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 83 RASLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141 Query: 167 IGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDV 207 +A+V I+ S I+ +VA+++P + Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSAQSA 183 >gi|227820519|ref|YP_002824490.1| type III secretion component, RhcJ protein [Sinorhizobium fredii NGR234] gi|227339518|gb|ACP23737.1| type III secretion component, RhcJ protein [Sinorhizobium fredii NGR234] Length = 267 Score = 128 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 42/181 (23%), Positives = 77/181 (42%), Gaps = 5/181 (2%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGS-SISVPSSMV 90 L++A +LY L+ + N + L I + +G +++V + Sbjct: 13 GLWLALIVVTLQACSVDLYTNLDEREANEMVATLLSKGIAAGRVVQKDGKLTVTVDENEF 72 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 +A L GLP + +F + + + + AL E++RT+ I G++ Sbjct: 73 SEAVTALNMAGLPKQKFATLGSVF-QQEGLVASPVQERAQMIYALSEELSRTVSEIDGVL 131 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209 +ARVH+V+PD ++ +ASV IR I+ LVA ++ L V+V Sbjct: 132 SARVHVVLPDNDPLQRNAIPASASVFIRHEAGLDVNPLIPRIKTLVANSISGLTYEKVSV 191 Query: 210 L 210 + Sbjct: 192 V 192 >gi|296123331|ref|YP_003631109.1| secretory protein YscJ/FliF family protein [Planctomyces limnophilus DSM 3776] gi|296015671|gb|ADG68910.1| secretory protein YscJ/FliF family protein [Planctomyces limnophilus DSM 3776] Length = 532 Score = 128 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 100/553 (18%), Positives = 195/553 (35%), Gaps = 40/553 (7%) Query: 17 LGRTRILILASVILVPIMLFMAARFFVNSPHYDNL--YVKLEVSDVNRISVALSEANIDF 74 + + + L L+ + F + N+ L ++ AL EA + Sbjct: 1 MNSAQRISLIVAPLILLAGFGFLYWSNNTSGMVALSWGKVFTTEELIAAEHALMEAGLT- 59 Query: 75 RISDNGSSISVPSSMVGKARIHLAA-QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 G + VP++ + L +P + + ++ ++ F +T + R Sbjct: 60 DFQRQGRMLLVPAAEKDRYNAALLEFDAMPEDLGSQLLKHYESLSPF-ITEKQRHEMREA 118 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEAI 191 L E+A+T+++I + ARV I P+ + TA+V I + +I Sbjct: 119 MLLKEVAQTLKAIPNVEDARVVIANPNRRNSWSQKGTVTANVTITPKKGRELSTRLVASI 178 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL-SIVQAIQHEIEMNINKALA 250 R VA+ VP+L DVTV D ++ A + + L L ++ + + E I+K+L+ Sbjct: 179 RAAVASMVPDLKTSDVTVFDPVNEVTYAGDAADDPLSSQLVQRIRELTKQYESQISKSLS 238 Query: 251 AFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQ 310 GV N V E N+ + IR DP P Sbjct: 239 YIPGV-NVTVHVDIE-NLKSSVIRTQQIDPKKSAPVISNEFTVNDTQTQRAPRGEPGQVA 296 Query: 311 NMPHVSDRKVPLPRSLENTDKKEEQSN---YEINTKSIATTHDNYKLERLSIAVVVNKGR 367 N P R+ + T+ N +EI+ K K ++SI+V + R Sbjct: 297 NRPASVGGSAGSDRNRQMTESDNRVVNGVSFEISEK--QLLAAMPKAVQVSISVPRDYYR 354 Query: 368 LTEVLGRSADQGKID-SYLAEINKIVSAATGINSRR-------GDTITITSMDFLENQLF 419 +A + + + I K V A+ + R D I ++++ + Sbjct: 355 GIAAQRTAAGEKDPALTEIPAIEKEVLASVSKSVNRLIPADSPDDAIVVSTV---DTLAK 411 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 TV + + + + F + + L + + L +A G+ + Sbjct: 412 ELPTVTIPWTETAWQFFREY-GSTMALGAFAIYVAMMLRKSMGSLAQANASPGDSRTDNA 470 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 P++ + P +A+++ + +R +L ++ N Sbjct: 471 NGMNPLNPSGG----PEAAMAMNALQGASAALPPKPATR---------RDQLQAIVRDNP 517 Query: 540 ERFAKILRKWARS 552 E A +L KW ++ Sbjct: 518 EATAALLGKWIQA 530 >gi|257487247|ref|ZP_05641288.1| type III secretion component protein HrcJ [Pseudomonas syringae pv. tabaci ATCC 11528] gi|50508099|dbj|BAD30075.1| HrcJ [Pseudomonas syringae pv. tabaci] gi|238577776|gb|ACR46687.1| HrcJ [Pseudomonas syringae pv. tabaci] Length = 268 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 4/162 (2%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 +L+ L D N + L++ +ID R + G ++V +S + +A L A GLP S Sbjct: 23 TDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQS 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 S ++F K T + + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 83 RASLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141 Query: 167 IGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDV 207 +A+V I+ S I+ +VA+++P + Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSAQSA 183 >gi|167566308|ref|ZP_02359224.1| lipoprotein transmembrane protein [Burkholderia oklahomensis EO147] Length = 258 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDF-RISDNGS---SISVPSSMVGKARIHLAAQGLPS 104 LY L D N + AL + +D + + +G +++V + KA L A+GLP+ Sbjct: 37 QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 96 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + LF K T + + + + E++ T+ I G+V ARVHIV+P+ F Sbjct: 97 TRYDDLGALFKKD-GLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPF 155 Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 ++ +ASV I+ + + I++LV +V L +V+V Sbjct: 156 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 202 >gi|298485938|ref|ZP_07004013.1| type III secretion system lipoprotein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159524|gb|EFI00570.1| type III secretion system lipoprotein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 268 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 4/162 (2%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 +L+ L D N + L++ +ID R + G ++V +S + +A L A GLP S Sbjct: 23 TDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQS 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 S ++F K T + + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 83 RASLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141 Query: 167 IGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDV 207 +A+V I+ S I+ +VA+++P + Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSAQSA 183 >gi|307947525|ref|ZP_07662858.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Roseibium sp. TrichSKD4] gi|307769343|gb|EFO28571.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Roseibium sp. TrichSKD4] Length = 250 Score = 128 bits (321), Expect = 3e-27, Method: Composition-based stats. Identities = 51/213 (23%), Positives = 90/213 (42%), Gaps = 23/213 (10%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M +L + +F +G V + + F+A LY KL+ DV Sbjct: 1 MYVLSSIKRFLPNGR-----------FVAAILVAAFLAGC-------QSELYSKLDERDV 42 Query: 61 NRISVALSEANIDF---RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 N ++ L I R S+ ++ + +A LA GLP + E+F Sbjct: 43 NEMAFVLESNGISVSRERDSEGTYTLFIERGDTARAYGILAQNGLPRQKFDGLGEVFSSD 102 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 T+F ++ + A+ E++++I I+G+ +A VHI +P+ + A A+V I Sbjct: 103 -KLVSTAFEEKARFIHAVTEELSKSISRIAGVTSAEVHITLPEKAPLEEETAPSRAAVFI 161 Query: 178 RAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTV 209 + I++LVA++V L DV+V Sbjct: 162 YHSQGTDLNAQIPVIKNLVASSVERLSYEDVSV 194 >gi|312602780|ref|YP_004022625.1| type III secretion cytoplasmic membrane protein SctJ [Burkholderia rhizoxinica HKI 454] gi|306431583|emb|CBK52135.1| type III secretion cytoplasmic membrane protein SctJ [Burkholderia rhizoxinica HKI 454] gi|312170094|emb|CBW77106.1| type III secretion cytoplasmic membrane protein SctJ [Burkholderia rhizoxinica HKI 454] Length = 265 Score = 128 bits (321), Expect = 3e-27, Method: Composition-based stats. Identities = 53/196 (27%), Positives = 87/196 (44%), Gaps = 10/196 (5%) Query: 20 TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS-- 77 R +++ +V + L + + + LY L DVN + VAL E +D S Sbjct: 5 QRTIVIRISRIV-LALLVCLSLWG---CHKELYNNLSEQDVNEMMVALLERGVDASKSTP 60 Query: 78 DNGSS--ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135 DNG + +SV + + +A L A+GLP + + LF + T + + + L Sbjct: 61 DNGKTWSLSVEEAEIVRAMEVLRARGLPHAKYDDLGSLFKRD-GLVSTPTEERVRFIYGL 119 Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHL 194 E++ T+ I G+V ARV IV+P+ +ASV I+ S + I+ L Sbjct: 120 SQELSNTLSKIDGVVVARVQIVLPNNDPLALQAKPSSASVFIKYRPDSDVAALVPQIKTL 179 Query: 195 VAAAVPNLDMGDVTVL 210 V +V L V+V Sbjct: 180 VVHSVEGLTYEAVSVT 195 >gi|330984953|gb|EGH83056.1| type III secretion protein HrcJ [Pseudomonas syringae pv. lachrymans str. M301315] Length = 269 Score = 127 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 42/162 (25%), Positives = 75/162 (46%), Gaps = 4/162 (2%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 +L+ L D N + L++ +ID R + G ++V + + +A L A GLP S Sbjct: 23 TDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATRDMNRAVRVLNAAGLPRQS 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 S E+F K T + + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 83 RTSLGEIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141 Query: 167 IGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDV 207 +A+V I+ S I+ +VA+++P + Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQSA 183 >gi|3603315|gb|AAC35801.1| putative hrp type III secretion pathway protein [Pseudomonas syringae pv. glycinea] Length = 268 Score = 127 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 42/162 (25%), Positives = 75/162 (46%), Gaps = 4/162 (2%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 +L+ L D N + L++ +ID R + G ++V +S + +A L A GLP S Sbjct: 23 TDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQS 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 S ++F K T + + AL E+ T I G++ ARVH+V+P+ + + Sbjct: 83 RASLGDIFKKEGVI-STPLEERARYIYALSQELEATWSQIDGVIVARVHVVLPERIAPGE 141 Query: 167 IGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDV 207 +A+V I+ S I+ +VA+++P + Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSAQSA 183 >gi|330872935|gb|EGH07084.1| type III secretion protein HrcJ [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330963064|gb|EGH63324.1| type III secretion protein HrcJ [Pseudomonas syringae pv. actinidiae str. M302091] Length = 268 Score = 127 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 77/162 (47%), Gaps = 4/162 (2%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 +L+ L D N + L++ +ID R + G ++V +S + +A L A GLP S Sbjct: 23 TDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSEMNRAVRVLDAAGLPRRS 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + E+F K T + + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 83 RTTLGEIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141 Query: 167 IGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDV 207 +A+V I+ S I+ +VA+++P + V Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQSV 183 >gi|28868592|ref|NP_791211.1| type III secretion protein HrcJ [Pseudomonas syringae pv. tomato str. DC3000] gi|213968275|ref|ZP_03396419.1| type III secretion protein HrcJ [Pseudomonas syringae pv. tomato T1] gi|301383410|ref|ZP_07231828.1| type III secretion protein HrcJ [Pseudomonas syringae pv. tomato Max13] gi|302061714|ref|ZP_07253255.1| type III secretion protein HrcJ [Pseudomonas syringae pv. tomato K40] gi|302129971|ref|ZP_07255961.1| type III secretion protein HrcJ [Pseudomonas syringae pv. tomato NCPPB 1108] gi|790910|gb|AAB00129.1| HrpC [Pseudomonas syringae pv. tomato] gi|28851830|gb|AAO54906.1| type III secretion protein HrcJ [Pseudomonas syringae pv. tomato str. DC3000] gi|213926913|gb|EEB60464.1| type III secretion protein HrcJ [Pseudomonas syringae pv. tomato T1] gi|331015115|gb|EGH95171.1| type III secretion protein HrcJ [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 268 Score = 127 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 77/162 (47%), Gaps = 4/162 (2%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 +L+ L D N + L++ +ID R + G ++V +S + +A L A GLP S Sbjct: 23 TDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSEMNRAVRVLDAAGLPRRS 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + E+F K T + + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 83 RTTLGEIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141 Query: 167 IGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDV 207 +A+V I+ S I+ +VA+++P + V Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQSV 183 >gi|330957475|gb|EGH57735.1| type III secretion protein HrcJ [Pseudomonas syringae pv. maculicola str. ES4326] Length = 269 Score = 127 bits (320), Expect = 4e-27, Method: Composition-based stats. Identities = 42/162 (25%), Positives = 75/162 (46%), Gaps = 4/162 (2%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 +L+ L D N + L++ +ID R + G ++V + + +A L A GLP S Sbjct: 23 TDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATRDMNRAVRVLNAAGLPRQS 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 S E+F K T + + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 83 RTSLGEIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141 Query: 167 IGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDV 207 +A+V I+ S I+ +VA+++P + Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQSA 183 >gi|330894451|gb|EGH27112.1| type III secretion protein HrcJ [Pseudomonas syringae pv. mori str. 301020] Length = 269 Score = 127 bits (320), Expect = 4e-27, Method: Composition-based stats. Identities = 42/162 (25%), Positives = 75/162 (46%), Gaps = 4/162 (2%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 +L+ L D N + L++ +ID R + G ++V + + +A L A GLP S Sbjct: 23 TDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATRDMNRAVRVLNAAGLPRQS 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 S E+F K T + + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 83 RTSLGEIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141 Query: 167 IGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDV 207 +A+V I+ S I+ +VA+++P + Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQSA 183 >gi|237799989|ref|ZP_04588450.1| type III secretion protein HrcJ [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022844|gb|EGI02901.1| type III secretion protein HrcJ [Pseudomonas syringae pv. oryzae str. 1_6] Length = 269 Score = 127 bits (320), Expect = 4e-27, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 4/162 (2%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 +L+ L D N + L++ +ID R + G ++V +S + +A L A GLP S Sbjct: 23 TDLFTGLSEQDSNEVVARLADQHIDARKRMEKTGVVVTVATSDMNRAVRVLDAAGLPRHS 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 S E+F K T + + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 83 RTSLGEIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERVAPGE 141 Query: 167 IGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDV 207 +A+V I+ S I+ +VA+++P + Sbjct: 142 PIQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSAQSA 183 >gi|51103010|gb|AAT96157.1| HrcJ [Pseudomonas viridiflava] gi|51103065|gb|AAT96211.1| HrcJ [Pseudomonas viridiflava] Length = 268 Score = 127 bits (319), Expect = 5e-27, Method: Composition-based stats. Identities = 41/160 (25%), Positives = 75/160 (46%), Gaps = 4/160 (2%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 +L+ + D N + L++ +ID R + G ++V + + +A L A GLP S Sbjct: 23 TDLFTGMSEQDSNEVIARLADQHIDARKRLEKGGVVVTVATQDMNRAVRVLDAAGLPRQS 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 S E+F K T + + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 83 RTSLGEIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141 Query: 167 IGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMG 205 +A+V I+ S I+ +VA+++P + Sbjct: 142 PVQPASAAVFIKHSTALDPDSVRGRIQQMVASSIPGMSTQ 181 >gi|149926067|ref|ZP_01914330.1| putative type III secretion protein [Limnobacter sp. MED105] gi|149825355|gb|EDM84566.1| putative type III secretion protein [Limnobacter sp. MED105] Length = 265 Score = 127 bits (319), Expect = 6e-27, Method: Composition-based stats. Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 4/158 (2%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSSSN 108 L+ L + N I +L EA I S G ISVP M A L +QGLP + Sbjct: 30 LFSGLSQEEGNEIYSSLLEAGIPVEKSSGKEGVIISVPKQMSSDALRILQSQGLPRAKKT 89 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 S E+F K + + + + AL E+ T+ S+ G+++ARVHIV+P+ + ++ Sbjct: 90 SMGEVFKKESMI-SSPLEERARYLYALSQELEETLMSMDGVLSARVHIVLPERANPGEVL 148 Query: 169 ARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMG 205 + +A+V ++ N S + + +R L+ ++P + Sbjct: 149 SPSSAAVFVKYENGSSFPAYVPRVRELIFKSIPGITGE 186 >gi|119034700|gb|ABL59995.1| SctJ [Lysobacter enzymogenes] Length = 281 Score = 127 bits (318), Expect = 7e-27, Method: Composition-based stats. Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 7/167 (4%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDN----GSSISVPSSMVGKARIHLAAQGLPS 104 LY +L+ N + AL +A I + G + V + A L ++GLP Sbjct: 43 TPLYSQLDEQQANELMAALLDAGIPAEKDPSPSKTGWEVMVNRGDIPYAMQVLNSRGLPR 102 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + S E+F K F ++ ++ + L E++RT+ I G+V ARVHI +PD Sbjct: 103 AQYRSLGEVF-KKEGFASSALEEKARYLYGLSQELSRTLTRIDGVVEARVHIALPDRDPL 161 Query: 165 RKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNL-DMGDVTV 209 +ASV+I + E I+ V +V L D+ VTV Sbjct: 162 GGNVQDSSASVLIFERPGQSLRDRETDIKVFVKDSVEGLDDVNKVTV 208 >gi|171316789|ref|ZP_02906000.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia ambifaria MEX-5] gi|171098047|gb|EDT42863.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia ambifaria MEX-5] Length = 241 Score = 127 bits (318), Expect = 7e-27, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 69/165 (41%), Gaps = 6/165 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNGSS----ISVPSSMVGKARIHLAAQGLPSSS 106 LY L D N + AL E ID G+ +SVP A L +GLP Sbjct: 17 LYENLTEQDANEMIAALFENGIDASKQRGGNGKFWMVSVPEGEFAGAINVLRDRGLPQEK 76 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + LF K F T + + + L E++ TI +I G++ ARV IV+P+ + Sbjct: 77 RDDLGNLFKKD-GFVSTPTEERVRFLYGLSQELSSTISAIDGVMVARVQIVLPNNDPLAE 135 Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 +ASV I+ S I+ LV +V L V+V Sbjct: 136 QVKPSSASVFIKYNADSSVGQIVPQIKTLVVNSVEGLAYERVSVT 180 >gi|312597814|gb|ADQ89929.1| RscJ [Pseudomonas fluorescens] Length = 293 Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats. Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 4/159 (2%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPS 104 L+ L D N + L+ N++ ++ +G ++ V + + A L A GLP Sbjct: 18 ERTALHSHLSEQDANEVIAELANKNVEASKQVDKDGLTVLVEPADMNSAVQVLEAAGLPR 77 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 S +S E+F K T + + AL E+ T+ I G+V ARVH+V+P+ + Sbjct: 78 RSRSSLGEIFRKEGVI-STPMEERARYIYALSQELESTLSQIDGVVLARVHVVLPERVAP 136 Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNL 202 + +ASV I+ N S +R+LVA+ +P + Sbjct: 137 GEPVQPASASVFIKHTNALDPDSITPRVRNLVASGIPGM 175 >gi|167615471|ref|ZP_02384106.1| lipoprotein transmembrane protein [Burkholderia thailandensis Bt4] Length = 252 Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDF-RISDNGS---SISVPSSMVGKARIHLAAQGLPS 104 LY L D N + AL + +D + + +G +++V + KA L A+GLP+ Sbjct: 39 QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 98 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + LF K T + + + + E++ T+ I G+V ARVHIV+P+ Sbjct: 99 TRYDDLGALFKKD-GLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 157 Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 ++ +ASV I+ + + I++LV +V L +V+V Sbjct: 158 AQVAKPSSASVFIKYRPSANLATLTPQIKNLVVHSVEGLTYDEVSVT 204 >gi|330812416|ref|YP_004356878.1| type III secretion protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380524|gb|AEA71874.1| putative type III secretion protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 295 Score = 125 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 4/159 (2%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPS 104 L+ L D N + L+ N++ ++ +G ++ V + + A L A GLP Sbjct: 20 ERTALHSHLSEQDANEVIAELANKNVEASKQVDKDGLTVLVEPADMNSAVQVLEAAGLPR 79 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 S +S E+F K T + + AL E+ T+ I G+V ARVH+V+P+ + Sbjct: 80 RSRSSLGEIFRKEGVI-STPMEERARYIYALSQELESTLSQIDGVVLARVHVVLPERVAP 138 Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNL 202 + +ASV I+ N S +R+LVA+ +P + Sbjct: 139 GEPVQPASASVFIKHTNALDPDSITPRVRNLVASGIPGM 177 >gi|167577322|ref|ZP_02370196.1| lipoprotein transmembrane protein [Burkholderia thailandensis TXDOH] Length = 260 Score = 125 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDF-RISDNGS---SISVPSSMVGKARIHLAAQGLPS 104 LY L D N + AL + +D + + +G +++V + KA L A+GLP+ Sbjct: 39 QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 98 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + LF K T + + + + E++ T+ I G+V ARVHIV+P+ Sbjct: 99 TRYDDLGALFKKD-GLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 157 Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 ++ +ASV I+ + + I++LV +V L +V+V Sbjct: 158 AQVAKPSSASVFIKYRPSANLATLTPQIKNLVVHSVEGLTYDEVSVT 204 >gi|27376924|ref|NP_768453.1| RhcJ protein [Bradyrhizobium japonicum USDA 110] gi|12620520|gb|AAG60796.1|AF322012_101 RhcJ [Bradyrhizobium japonicum] gi|27350066|dbj|BAC47078.1| RhcJ protein [Bradyrhizobium japonicum USDA 110] Length = 287 Score = 125 bits (315), Expect = 2e-26, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 93/204 (45%), Gaps = 12/204 (5%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 K G+S GR L + +P++L + +LY K++ + N + L Sbjct: 5 MKRGSSGGRQSWRRLRVFLAMPLLLSLIGCK-------TDLYTKIQEREANEMLALLLGK 57 Query: 71 NIDF-RI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 +D R+ D S+I V + + L +GLP S + E+F K + + + Sbjct: 58 GVDAVRVVAKDGTSTIQVEEKQLAYSIDLLNVEGLPRQSFKNLGEVF-KGSGLVASPIEE 116 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187 V AL E++RTI I G+++ARVH+V+P R+ +ASV IR + + + Sbjct: 117 RARYVYALSEELSRTISDIDGVLSARVHVVLPKNDLLRQGATPSSASVFIRHGSSARLSA 176 Query: 188 -AEAIRHLVAAAVPNLDMGDVTVL 210 I+ LVA ++ L V V+ Sbjct: 177 LLPQIKMLVANSIEGLSYDKVAVV 200 >gi|237678823|emb|CAQ57550.1| RhcJ protein [Bradyrhizobium elkanii] Length = 291 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 5/164 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDF-RI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 LY K++ + N + L +D R+ D S+I V + + L +GLP S Sbjct: 41 LYSKIQEREANEMLALLLGKGVDAARVVAKDGTSTIQVEERQLAYSIDLLNVEGLPRQSF 100 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 + E+F K + + + V AL E++RTI I G+++ARVH+V+P R+ Sbjct: 101 KNLGEVF-KGSGLVASPIEERARYVYALSEELSRTISDIDGVLSARVHVVLPKNDLLRQD 159 Query: 168 GARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 +ASV IR + + + I+ LVA ++ L V V+ Sbjct: 160 ATPSSASVFIRHGSNAKLSALLPQIKMLVANSIEGLSYDKVAVV 203 >gi|167840290|ref|ZP_02466974.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia thailandensis MSMB43] Length = 253 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDF-RISDNGS---SISVPSSMVGKARIHLAAQGLPS 104 LY L D N + AL + +D + + +G +++V + KA L A+GLP+ Sbjct: 35 QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 94 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + LF K T + + + + E++ T+ I G+V ARVHIV+P+ Sbjct: 95 ARYDDLGALFKKD-GLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 153 Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 ++ +ASV I+ + + I++LV +V L +V+V Sbjct: 154 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 200 >gi|167924750|ref|ZP_02511841.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei BCC215] Length = 243 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDF-RISDNGS---SISVPSSMVGKARIHLAAQGLPS 104 LY L D N + AL + +D + + +G +++V + KA L A+GLP+ Sbjct: 36 QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + LF K T + + + + E++ T+ I G+V ARVHIV+P+ Sbjct: 96 TRYDDLGALFKKD-GLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154 Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 ++ +ASV I+ + + I++LV +V L +V+V Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201 >gi|167907276|ref|ZP_02494481.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei NCTC 13177] Length = 244 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDF-RISDNGS---SISVPSSMVGKARIHLAAQGLPS 104 LY L D N + AL + +D + + +G +++V + KA L A+GLP+ Sbjct: 36 QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + LF K T + + + + E++ T+ I G+V ARVHIV+P+ Sbjct: 96 TRYDDLGALFKKD-GLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154 Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 ++ +ASV I+ + + I++LV +V L +V+V Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201 >gi|167850348|ref|ZP_02475856.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei B7210] Length = 242 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDF-RISDNGS---SISVPSSMVGKARIHLAAQGLPS 104 LY L D N + AL + +D + + +G +++V + KA L A+GLP+ Sbjct: 36 QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + LF K T + + + + E++ T+ I G+V ARVHIV+P+ Sbjct: 96 TRYDDLGALFKKD-GLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154 Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 ++ +ASV I+ + + I++LV +V L +V+V Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201 >gi|167743335|ref|ZP_02416109.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 14] Length = 230 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDF-RISDNGS---SISVPSSMVGKARIHLAAQGLPS 104 LY L D N + AL + +D + + +G +++V + KA L A+GLP+ Sbjct: 36 QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + LF K T + + + + E++ T+ I G+V ARVHIV+P+ Sbjct: 96 TRYDDLGALFKKD-GLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154 Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 ++ +ASV I+ + + I++LV +V L +V+V Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201 >gi|83716240|ref|YP_438944.1| lipoprotein transmembrane protein [Burkholderia thailandensis E264] gi|83650065|gb|ABC34129.1| lipoprotein transmembrane protein [Burkholderia thailandensis E264] Length = 285 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDF-RISDNGS---SISVPSSMVGKARIHLAAQGLPS 104 LY L D N + AL + +D + + +G +++V + KA L A+GLP+ Sbjct: 37 QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 96 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + LF K T + + + + E++ T+ I G+V ARVHIV+P+ Sbjct: 97 TRYDDLGALFKKD-GLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 155 Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 ++ +ASV I+ + + I++LV +V L +V+V Sbjct: 156 AQVAKPSSASVFIKYRPSANLATLTPQIKNLVVHSVEGLTYDEVSVT 202 >gi|257142047|ref|ZP_05590309.1| lipoprotein transmembrane protein [Burkholderia thailandensis E264] Length = 287 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDF-RISDNGS---SISVPSSMVGKARIHLAAQGLPS 104 LY L D N + AL + +D + + +G +++V + KA L A+GLP+ Sbjct: 39 QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 98 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + LF K T + + + + E++ T+ I G+V ARVHIV+P+ Sbjct: 99 TRYDDLGALFKKD-GLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 157 Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 ++ +ASV I+ + + I++LV +V L +V+V Sbjct: 158 AQVAKPSSASVFIKYRPSANLATLTPQIKNLVVHSVEGLTYDEVSVT 204 >gi|167573409|ref|ZP_02366283.1| lipoprotein transmembrane protein [Burkholderia oklahomensis C6786] Length = 262 Score = 125 bits (313), Expect = 3e-26, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDF-RISDNGS---SISVPSSMVGKARIHLAAQGLPS 104 LY L D N + AL + +D + + +G +++V + KA L A+GLP+ Sbjct: 37 QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 96 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + LF K T + + + + E++ T+ I G+V ARVHIV+P+ Sbjct: 97 TRYDDLGALFKKD-GLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 155 Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 ++ +ASV I+ + + I++LV +V L +V+V Sbjct: 156 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 202 >gi|167915637|ref|ZP_02502728.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 112] Length = 239 Score = 125 bits (313), Expect = 3e-26, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDF-RISDNGS---SISVPSSMVGKARIHLAAQGLPS 104 LY L D N + AL + +D + + +G +++V + KA L A+GLP+ Sbjct: 36 QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + LF K T + + + + E++ T+ I G+V ARVHIV+P+ Sbjct: 96 TRYDDLGALFKKD-GLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154 Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 ++ +ASV I+ + + I++LV +V L +V+V Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201 >gi|167724370|ref|ZP_02407606.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei DM98] Length = 236 Score = 125 bits (313), Expect = 3e-26, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDF-RISDNGS---SISVPSSMVGKARIHLAAQGLPS 104 LY L D N + AL + +D + + +G +++V + KA L A+GLP+ Sbjct: 36 QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + LF K T + + + + E++ T+ I G+V ARVHIV+P+ Sbjct: 96 TRYDDLGALFKKD-GLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154 Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 ++ +ASV I+ + + I++LV +V L +V+V Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201 >gi|126442814|ref|YP_001063279.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Burkholderia pseudomallei 668] gi|126222305|gb|ABN85810.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 668] Length = 284 Score = 124 bits (312), Expect = 3e-26, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDF-RISDNGS---SISVPSSMVGKARIHLAAQGLPS 104 LY L D N + AL + +D + + +G +++V + KA L A+GLP+ Sbjct: 36 QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + LF K T + + + + E++ T+ I G+V ARVHIV+P+ Sbjct: 96 TRYDDLGALFKKD-GLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154 Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 ++ +ASV I+ + + I++LV +V L +V+V Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201 >gi|76819642|ref|YP_335842.1| lipoprotein transmembrane protein [Burkholderia pseudomallei 1710b] gi|76584115|gb|ABA53589.1| lipoprotein transmembrane protein [Burkholderia pseudomallei 1710b] Length = 282 Score = 124 bits (312), Expect = 3e-26, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDF-RISDNGS---SISVPSSMVGKARIHLAAQGLPS 104 LY L D N + AL + +D + + +G +++V + KA L A+GLP+ Sbjct: 34 QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 93 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + LF K T + + + + E++ T+ I G+V ARVHIV+P+ Sbjct: 94 TRYDDLGALFKKD-GLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 152 Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 ++ +ASV I+ + + I++LV +V L +V+V Sbjct: 153 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 199 >gi|226198447|ref|ZP_03794015.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei Pakistan 9] gi|254186953|ref|ZP_04893469.1| lipoprotein transmembrane protein [Burkholderia pseudomallei Pasteur 52237] gi|157934637|gb|EDO90307.1| lipoprotein transmembrane protein [Burkholderia pseudomallei Pasteur 52237] gi|225929504|gb|EEH25523.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei Pakistan 9] Length = 270 Score = 124 bits (312), Expect = 3e-26, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDF-RISDNGS---SISVPSSMVGKARIHLAAQGLPS 104 LY L D N + AL + +D + + +G +++V + KA L A+GLP+ Sbjct: 36 QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + LF K T + + + + E++ T+ I G+V ARVHIV+P+ Sbjct: 96 TRYDDLGALFKKD-GLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154 Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 ++ +ASV I+ + + I++LV +V L +V+V Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201 >gi|53722647|ref|YP_111632.1| type III secretion protein [Burkholderia pseudomallei K96243] gi|126457668|ref|YP_001076235.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Burkholderia pseudomallei 1106a] gi|217422397|ref|ZP_03453900.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 576] gi|242312420|ref|ZP_04811437.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 1106b] gi|254264523|ref|ZP_04955388.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 1710a] gi|52213061|emb|CAH39099.1| putative type III secretion protein [Burkholderia pseudomallei K96243] gi|126231436|gb|ABN94849.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 1106a] gi|217394628|gb|EEC34647.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 576] gi|242135659|gb|EES22062.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 1106b] gi|254215525|gb|EET04910.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 1710a] Length = 284 Score = 124 bits (312), Expect = 3e-26, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDF-RISDNGS---SISVPSSMVGKARIHLAAQGLPS 104 LY L D N + AL + +D + + +G +++V + KA L A+GLP+ Sbjct: 36 QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + LF K T + + + + E++ T+ I G+V ARVHIV+P+ Sbjct: 96 TRYDDLGALFKKD-GLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154 Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 ++ +ASV I+ + + I++LV +V L +V+V Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201 >gi|167820515|ref|ZP_02452195.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 91] gi|167828888|ref|ZP_02460359.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 9] Length = 235 Score = 124 bits (312), Expect = 3e-26, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDF-RISDNGS---SISVPSSMVGKARIHLAAQGLPS 104 LY L D N + AL + +D + + +G +++V + KA L A+GLP+ Sbjct: 36 QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + LF K T + + + + E++ T+ I G+V ARVHIV+P+ Sbjct: 96 TRYDDLGALFKKD-GLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154 Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 ++ +ASV I+ + + I++LV +V L +V+V Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201 >gi|330819406|ref|YP_004348268.1| Type III secretion apparatus lipoprotein, YscJ/HrcJ family protein [Burkholderia gladioli BSR3] gi|327371401|gb|AEA62756.1| Type III secretion apparatus lipoprotein, YscJ/HrcJ family protein [Burkholderia gladioli BSR3] Length = 277 Score = 124 bits (312), Expect = 3e-26, Method: Composition-based stats. Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 8/186 (4%) Query: 30 LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDNGS---SISV 85 + F LY L DVN + VAL E +D + + +G ++ V Sbjct: 11 ASVVGAFALCALLAGCK--KELYGNLSEQDVNEMVVALLENGVDAAKETPDGGKTWTLEV 68 Query: 86 PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145 + +A L ++GLP S ++ +LF K T + + + + E++ T+ Sbjct: 69 DGDQMVRAMEALRSRGLPKSRFDNLGDLFKKD-GLVSTPTEERVRFIYGMSQELSSTLSK 127 Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDM 204 I G++ ARV IV+P+ + +A+V I+ S + I+ LV +V L Sbjct: 128 IDGVLVARVQIVLPNNDPLAQTIKPSSAAVFIKYRPNSDVGALVPQIKTLVMHSVEGLTY 187 Query: 205 GDVTVL 210 V+V Sbjct: 188 DQVSVT 193 >gi|317407862|gb|EFV87788.1| BscJ protein [Achromobacter xylosoxidans C54] Length = 284 Score = 124 bits (312), Expect = 3e-26, Method: Composition-based stats. Identities = 53/204 (25%), Positives = 92/204 (45%), Gaps = 11/204 (5%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 +F + G G R+ ++ S++L+ ML +L + + N + L Sbjct: 7 EFRRLGARRGYRRVWLIGSLLLLLAMLTACGA-------RVDLLAAVPEGEANEVLSVLL 59 Query: 69 EANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 +A I + S G +I+V + V +A L A+GLP + ++F K + Sbjct: 60 DAGIAAQKSAGKAGVAINVQADQVAQALAVLRARGLPRERFDGMGQIFRKE-GLVSSPLE 118 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 + + AL E+A T+ + G++AARVH+V+P+ G + TA+V I+ Sbjct: 119 ERARYIYALSQELANTLSQMDGVIAARVHVVLPERGGVGEEATPSTAAVFIKTQPGYALD 178 Query: 187 S-AEAIRHLVAAAVPNLDMGDVTV 209 + IR LV A+P L V+V Sbjct: 179 ALLPQIRRLVIHAIPGLSEDKVSV 202 >gi|229588272|ref|YP_002870391.1| putative type III secretion protein [Pseudomonas fluorescens SBW25] gi|229360138|emb|CAY46995.1| putative type III secretion protein [Pseudomonas fluorescens SBW25] Length = 271 Score = 124 bits (312), Expect = 3e-26, Method: Composition-based stats. Identities = 44/173 (25%), Positives = 85/173 (49%), Gaps = 8/173 (4%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPS 104 L+ +L + N + L++ +I R + +G ++SV ++ +G+A L A GLP Sbjct: 29 DRVELHRQLSEQEANEVIAELADKHIRARKIPTKDGVTVSVDTNDIGRAVRTLEAVGLPK 88 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + + F K T + + AL E+ T+ +I G++ ARVH+V+P+ + Sbjct: 89 LARATLGDTFRKEGVI-STPLEERARYIYALSQELEATLSNIDGVIVARVHVVLPERIAP 147 Query: 165 RKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVTVLDSTGKL 216 + +ASV I+ + A +R +VA+++P + T +D+ KL Sbjct: 148 GEPVQPASASVFIKHDPRLDPDNIRARVRRMVASSIPGM----TTAVDNPQKL 196 >gi|167898945|ref|ZP_02486346.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 7894] Length = 235 Score = 124 bits (312), Expect = 4e-26, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDF-RISDNGS---SISVPSSMVGKARIHLAAQGLPS 104 LY L D N + AL + +D + + +G +++V + KA L A+GLP+ Sbjct: 36 QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + LF K T + + + + E++ T+ I G+V ARVHIV+P+ Sbjct: 96 TRYDDLGALFKKD-GLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154 Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 ++ +ASV I+ + + I++LV +V L +V+V Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201 >gi|237509505|ref|ZP_04522220.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei MSHR346] gi|235001710|gb|EEP51134.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei MSHR346] Length = 277 Score = 124 bits (311), Expect = 4e-26, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDF-RISDNGS---SISVPSSMVGKARIHLAAQGLPS 104 LY L D N + AL + +D + + +G +++V + KA L A+GLP+ Sbjct: 36 QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + LF K T + + + + E++ T+ I G+V ARVHIV+P+ Sbjct: 96 TRYDDLGALFKKD-GLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154 Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 ++ +ASV I+ + + I++LV +V L +V+V Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201 >gi|167584002|ref|ZP_02376390.1| lipoprotein transmembrane protein [Burkholderia ubonensis Bu] Length = 227 Score = 124 bits (311), Expect = 4e-26, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDF-RISDNGS---SISVPSSMVGKARIHLAAQGLPS 104 LY L D N + AL + +D + + +G +++V + KA L A+GLP+ Sbjct: 22 QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 81 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + LF K T + + + + E++ T+ I G+V ARVHIV+P+ Sbjct: 82 TRYDDLGALFKKD-GLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 140 Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 ++ +ASV I+ + + I++LV +V L +V+V Sbjct: 141 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 187 >gi|254193798|ref|ZP_04900230.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei S13] gi|169650549|gb|EDS83242.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei S13] Length = 284 Score = 124 bits (311), Expect = 4e-26, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 85/188 (45%), Gaps = 14/188 (7%) Query: 28 VILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDNGS---SI 83 ++ + LF R LY L D N + AL + +D + + +G ++ Sbjct: 23 TLVAYVALFAGCR--------QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTL 74 Query: 84 SVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTI 143 +V + KA L A+GLP++ + LF K T + + + + E++ T+ Sbjct: 75 AVDDKQIVKAMEVLRARGLPATRYDDLGALFKKD-GLVSTPTEERVRFIYGVSQELSDTL 133 Query: 144 QSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNL 202 I G+V ARVHIV+P+ ++ +ASV I+ + + I++LV +V L Sbjct: 134 SKIDGVVVARVHIVLPNNDPLAQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGL 193 Query: 203 DMGDVTVL 210 +V+V Sbjct: 194 TYDEVSVT 201 >gi|462730|sp|P33209|NOLT_RHIFR RecName: Full=Nodulation protein nolT; Flags: Precursor gi|152385|gb|AAB17677.1| nodulation protein [Sinorhizobium fredii] gi|19749322|gb|AAL98692.1| NolT [Sinorhizobium fredii] Length = 289 Score = 124 bits (311), Expect = 4e-26, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 5/166 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDF-RIS--DNGSSISVPSSMVGKARIHLAAQGLPSS 105 +LY +L+ + N I L + +D R++ D S+I V ++ + L +GLP Sbjct: 36 VDLYTQLQEREANEIVALLMDNGVDAVRVAGKDGTSTIQVDEKLLAFSIKLLNGKGLPRQ 95 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 S + E+F + + + + V AL E++ TI I G+ +ARVH+V+P R Sbjct: 96 SFKNLGEIF-QGSGLIASPTEERARYVYALSEELSHTISDIDGVFSARVHVVLPHNDLLR 154 Query: 166 KIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 +ASV IR ++ I+ LVA ++ L V V+ Sbjct: 155 AGDTPSSASVFIRHDAKTNLPALLPKIKMLVAESIEGLAYDKVEVV 200 >gi|134282063|ref|ZP_01768769.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 305] gi|134246592|gb|EBA46680.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 305] Length = 284 Score = 123 bits (310), Expect = 5e-26, Method: Composition-based stats. Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDF--RISDNG--SSISVPSSMVGKARIHLAAQGLPS 104 LY L D N + AL + +D + D+G +++V + KA L A+GLP+ Sbjct: 36 QELYGGLAERDCNEMMAALLQNGVDAQKKTPDDGKTWTLAVDDKQIVKAMEVLRARGLPA 95 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + LF K T + + + + E++ T+ I G+V ARVHIV+P+ Sbjct: 96 TRYDDLGALFKKD-GLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154 Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 ++ +ASV I+ + + I++LV +V L +V+V Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201 >gi|323530318|ref|YP_004232470.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia sp. CCGE1001] gi|323387320|gb|ADX59410.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia sp. CCGE1001] Length = 282 Score = 123 bits (309), Expect = 8e-26, Method: Composition-based stats. Identities = 47/167 (28%), Positives = 73/167 (43%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRIS--DNG--SSISVPSSMVGKARIHLAAQGLPS 104 LY L D N + VAL E +D S DNG ++ V + +A L +GLP Sbjct: 39 KELYRNLTEQDANEMVVALLEQGVDASKSTVDNGKTWTLEVDDKQLVRAMQVLRERGLPH 98 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + LF K T + + + L E++ T+ I G++ ARV IV+P+ Sbjct: 99 NRYDDLGSLFKKD-GLVSTPTEERVRFIYGLSQELSATLSKIDGVIVARVQIVLPNNDPL 157 Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 + +ASV I+ S + I+ LV +V L V+V Sbjct: 158 AQQMKPSSASVFIKYRPDSDASALVPQIKTLVMHSVEGLTYDAVSVT 204 >gi|254253717|ref|ZP_04947034.1| Type III secretory pathway lipoprotein EscJ [Burkholderia dolosa AUO158] gi|124898362|gb|EAY70205.1| Type III secretory pathway lipoprotein EscJ [Burkholderia dolosa AUO158] Length = 263 Score = 123 bits (308), Expect = 9e-26, Method: Composition-based stats. Identities = 49/192 (25%), Positives = 81/192 (42%), Gaps = 6/192 (3%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS-DNGS---SISVPSSM 89 ++ +AA + LY +L SD N + AL + +D + S +G S+ V Sbjct: 16 LVAVAALVLSLAACKQELYGQLTESDCNEMVAALLMSGVDAQKSTPDGGKTWSVGVDEKQ 75 Query: 90 VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149 + A L A+GLP + LF K T + + + L E+ T+ I G+ Sbjct: 76 IVHAVEVLRARGLPRKKFDDLGSLFKKD-GLVSTPTEERVRFIYGLSQELDDTLSKIDGV 134 Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVT 208 V ARV IV+P+ + +ASV I+ + + AI++LV ++ L V+ Sbjct: 135 VVARVQIVLPNNDPLAQSVKPSSASVFIKYRPDANLERMTPAIKNLVVHSIEGLTYDQVS 194 Query: 209 VLDSTGKLLTAN 220 V L Sbjct: 195 VTSVPADALDPP 206 >gi|52631916|gb|AAU85366.1| nodulation protein [Sinorhizobium fredii] Length = 289 Score = 122 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 5/166 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDF-RIS--DNGSSISVPSSMVGKARIHLAAQGLPSS 105 +LY +L+ + N + L + +D R++ D S+I V ++ + L +GLP Sbjct: 36 VDLYTQLQEREANEMLALLMDNGVDAVRVAGKDGTSTIQVDEKLLAFSIKLLNGKGLPRQ 95 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 S + E+F + + + + V AL E++ TI I G+ +ARVH+V+P R Sbjct: 96 SFKNLGEIF-QGSGLIASPTEERARYVYALSEELSHTISDIDGVFSARVHVVLPHNDLLR 154 Query: 166 KIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 +ASV IR ++ I+ LVA ++ L V V+ Sbjct: 155 AGDTPSSASVFIRHDAKTNLPALLPKIKMLVAESIEGLAYDKVEVV 200 >gi|307725653|ref|YP_003908866.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia sp. CCGE1003] gi|307586178|gb|ADN59575.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia sp. CCGE1003] Length = 276 Score = 122 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 73/167 (43%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRIS--DNG--SSISVPSSMVGKARIHLAAQGLPS 104 LY L D N + VAL E +D S DNG ++ V + +A L +GLP Sbjct: 33 KELYRNLTEQDANEMVVALLEQGVDASKSTVDNGKSWTLEVDDKQLVRAMQVLRERGLPH 92 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 S + LF K T + + + L E++ T+ I G++ ARV IV+P+ Sbjct: 93 SRYDDLGSLFKKD-GLVSTPTEERVRFIYGLSQELSATLSKIDGVIVARVQIVLPNNDPL 151 Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 + +ASV I+ S + I+ LV +V L V+V Sbjct: 152 AQQMKPSSASVFIKYRPDSDANALVPQIKTLVMHSVEGLTYDAVSVT 198 >gi|115360597|ref|YP_777734.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Burkholderia ambifaria AMMD] gi|115285925|gb|ABI91400.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia ambifaria AMMD] Length = 263 Score = 122 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 49/193 (25%), Positives = 85/193 (44%), Gaps = 17/193 (8%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS-DNGS 81 L+ A+V+++ + +LY +L SD N + AL + +D + S +G Sbjct: 16 LVAAAVLVLSLAACK-----------QDLYGQLSESDCNEMVAALLSSGVDAQKSTPDGG 64 Query: 82 ---SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 S+SV + A L A+G+P + LF K T + + + L E Sbjct: 65 KTWSVSVDEKQIVHAVEVLRARGIPRKKFDDLGSLFKKD-GLVSTPTEERVRFIYGLSQE 123 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAA 197 + T+ I G+V ARV IV+P+ + +ASV I+ + + AI++LV Sbjct: 124 LDDTLSKIDGVVVARVQIVLPNNDPLAQSVKPSSASVFIKYRPDANLERMTPAIKNLVVH 183 Query: 198 AVPNLDMGDVTVL 210 ++ L V+V Sbjct: 184 SIEGLTYDQVSVT 196 >gi|167567951|ref|ZP_02360867.1| type III secretion associated protein [Burkholderia oklahomensis EO147] gi|167573175|ref|ZP_02366049.1| type III secretion associated protein [Burkholderia oklahomensis C6786] Length = 260 Score = 122 bits (306), Expect = 2e-25, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 74/167 (44%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDF--RISDNG--SSISVPSSMVGKARIHLAAQGLPS 104 LY L DVN + VAL E +D +D G ++ V S + A L A+GLP Sbjct: 16 KELYGGLSEQDVNEMLVALLENGVDASKETADGGKNWTLGVESDQLVHAMGVLRARGLPR 75 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 S + LF K T + I + + E++ T+ I G++ ARV IV+P+ Sbjct: 76 SKFDDLGNLFKKD-GLVSTPTEERIRFIYGMSQELSSTLSKIDGVLVARVQIVLPNNDPL 134 Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 + +ASV I+ S + I+ LV +V L V+V Sbjct: 135 AQAAKPSSASVFIKYRPSSDIGALIPQIKTLVMHSVEGLTYEQVSVT 181 >gi|16520038|ref|NP_444158.1| outermembrane protein RhcJ; component of type III secretion apparatus [Sinorhizobium fredii NGR234] gi|2497732|sp|P55714|NOLT_RHISN RecName: Full=Nodulation protein nolT; Flags: Precursor gi|2182731|gb|AAB91945.1| outermembrane protein RhcJ; component of type III secretion apparatus [Sinorhizobium fredii NGR234] Length = 289 Score = 122 bits (306), Expect = 2e-25, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 5/166 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDF-RIS--DNGSSISVPSSMVGKARIHLAAQGLPSS 105 +LY +L+ + N + L ++ +D R++ D S+I V ++ + L A+GLP Sbjct: 36 VDLYTQLQEREANEMLALLMDSGVDAVRVAGKDGTSTIQVDEKLLAFSIKLLNAKGLPRQ 95 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 S + E+F + + + + V AL E++ TI I G+ +ARVH+V+P R Sbjct: 96 SFKNLGEIF-QGSGLIASPTEERARYVYALSEELSHTISDIDGVFSARVHVVLPHNDLLR 154 Query: 166 KIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 +ASV IR ++ I+ LVA ++ L V V+ Sbjct: 155 AGDTPSSASVFIRHDAKTNLPALLPKIKMLVAESIEGLAYDKVEVV 200 >gi|15042153|gb|AAK81934.1|AF292566_18 RscJ [Pseudomonas fluorescens] Length = 271 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 44/173 (25%), Positives = 86/173 (49%), Gaps = 8/173 (4%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDF-RI-SDNGSSISVPSSMVGKARIHLAAQGLPS 104 L+ +L + N + L++ +I +I + +G ++SV ++ +G+A L A GLP Sbjct: 29 DRVELHRQLSEQEANEVIAELADKHIRALQIPTKDGVTVSVDTNDIGRAVRTLEAVGLPK 88 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + + F K T + + AL E+ T+ +I G++ ARVH+V+P+ + Sbjct: 89 LARATLGDTFRKEGVI-STPLEERARYIYALSQELEATLSNIDGVIVARVHVVLPERIAP 147 Query: 165 RKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVTVLDSTGKL 216 + +ASV I+ + A +R +VA+++P + T +D+ KL Sbjct: 148 GEPVQPASASVFIKHDPRLDPDNIRARVRRMVASSIPGM----TTAVDNPQKL 196 >gi|172064921|ref|YP_001815633.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Burkholderia ambifaria MC40-6] gi|171997163|gb|ACB68080.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia ambifaria MC40-6] Length = 264 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 47/182 (25%), Positives = 79/182 (43%), Gaps = 6/182 (3%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS-DNGS---SISVPSSM 89 ++ A + LY +L SD N + AL + +D + S +G S+SV Sbjct: 16 LVATAVLVLSLAACKQELYGQLSESDCNEMVAALLSSGVDAQKSTPDGGKTWSVSVDEKQ 75 Query: 90 VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149 + A L A+G+P + LF K T + + + L E+ T+ I G+ Sbjct: 76 IVHAVEVLRARGIPRKKFDDLGSLFKKD-GLVSTPTEERVRFIYGLSQELDDTLSKIDGV 134 Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVT 208 V ARV IV+P+ + +ASV I+ + + AI++LV ++ L V+ Sbjct: 135 VVARVQIVLPNNDPLAQSVKPSSASVFIKYRPDANLERMTPAIKNLVVHSIEGLTYDQVS 194 Query: 209 VL 210 V Sbjct: 195 VT 196 >gi|170701293|ref|ZP_02892259.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia ambifaria IOP40-10] gi|170133816|gb|EDT02178.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia ambifaria IOP40-10] Length = 244 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 46/167 (27%), Positives = 75/167 (44%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRIS-DNGS---SISVPSSMVGKARIHLAAQGLPS 104 LY +L SD N + AL + +D + S +G S+SV + A L A+G+P Sbjct: 11 QELYGQLSESDCNEMVAALLSSGVDAQKSTPDGGKTWSVSVDEKQIVHAVEVLRARGIPR 70 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + LF K T + + + L E+ T+ I G+V ARV IV+P+ Sbjct: 71 KKFDDLGSLFKKD-GLVSTPTEERVRFIYGLSQELDDTLSKIDGVVVARVQIVLPNNDPL 129 Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 + +ASV I+ + + AI++LV ++ L V+V Sbjct: 130 AQSVKPSSASVFIKYRPDANLERMTPAIKNLVVHSIEGLTYDQVSVT 176 >gi|9885635|gb|AAG01458.1|AF282857_7 HrcJ [Pantoea stewartii subsp. stewartii] Length = 259 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 46/181 (25%), Positives = 83/181 (45%), Gaps = 10/181 (5%) Query: 25 LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSS 82 L S+IL+ ++L L L +D N ++ L +I + +G + Sbjct: 6 LKSLILMSVLLLFGCN------DQVELNHGLTENDANEVAAELGRYHIKAEKHTNKDGIT 59 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 + V ++ + +A L A GLP + + E+F K N T + + AL E+ T Sbjct: 60 VMVDTADLNRAVHILDAAGLPRPTRTNLGEVFQK-NGVISTPLEERARYIYALSQEVEST 118 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPN 201 + I G++ ARVH+V+P+ + + +A+V I+ E IR +VA+++P Sbjct: 119 LSQIDGVIVARVHVVLPERVAPGEPILPASAAVFIKYRPELDPDVIEPRIRQMVASSLPG 178 Query: 202 L 202 L Sbjct: 179 L 179 >gi|170690590|ref|ZP_02881757.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia graminis C4D1M] gi|170145025|gb|EDT13186.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia graminis C4D1M] Length = 282 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 72/167 (43%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRIS--DNG--SSISVPSSMVGKARIHLAAQGLPS 104 LY L D N + VAL E +D S DNG ++ V + A L +GLP Sbjct: 39 KELYRNLTEQDANEMVVALLEQGVDASKSTIDNGKTWTLEVDDKQLVHAMQVLRERGLPH 98 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 S + LF K T + + + L E++ T+ I G++ ARV IV+P+ Sbjct: 99 SRYDDLGSLFKKD-GLVSTPTEERVRFIYGLSQELSATLSKIDGVIVARVQIVLPNNDPL 157 Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 + +ASV I+ S + I+ LV +V L V+V Sbjct: 158 AQQMKPSSASVFIKYRPDSDANALVPQIKTLVMHSVEGLTYDAVSVT 204 >gi|171319020|ref|ZP_02908147.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia ambifaria MEX-5] gi|171095775|gb|EDT40728.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia ambifaria MEX-5] Length = 264 Score = 120 bits (302), Expect = 5e-25, Method: Composition-based stats. Identities = 50/163 (30%), Positives = 81/163 (49%), Gaps = 5/163 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRIS---DNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 L+ ++ D N + L A + +G +SV S+ V A L++ GLP Sbjct: 19 LFDQINERDANEMLSVLGRAGVAAEKDQRSADGWRLSVASADVSVALEILSSAGLPRERY 78 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 S ELF K T + + V A+ E++RTI +I G++ ARVH+ +P ++ Sbjct: 79 KSIGELFPKE-GLISTPVEEHMRSVYAISQELSRTISNIDGVITARVHLNIPRREPLLRV 137 Query: 168 GARPTASVMIRAINP-SVYKSAEAIRHLVAAAVPNLDMGDVTV 209 PTASV+++ S+ + AI+ LV A+ +LD +VTV Sbjct: 138 QQTPTASVLVKYRAEVSMQPNTLAIKDLVVGAIKDLDRANVTV 180 >gi|251789507|ref|YP_003004228.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Dickeya zeae Ech1591] gi|247538128|gb|ACT06749.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Dickeya zeae Ech1591] Length = 261 Score = 120 bits (302), Expect = 5e-25, Method: Composition-based stats. Identities = 43/173 (24%), Positives = 75/173 (43%), Gaps = 4/173 (2%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN--GSSISVPSSMV 90 + + A L+ L +D N + AL +I + G SI + + Sbjct: 10 FLTLLLAMLIAGCGDRVELHRGLSENDANEVIAALGGYHIGAEKRTDKAGVSILIDVKDM 69 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 +A L A GLP + + ++F K T + + AL E+ T+ I G++ Sbjct: 70 ERAVNILNAAGLPRQARTNLGQVFQKTGVI-STPLEERARYIYALSQEVESTLTQIDGVL 128 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNL 202 ARVH+V+P+ + + +A+V I+ S E IR +VA+++P L Sbjct: 129 VARVHVVLPERIAPGEPIQPASAAVFIKYRPELEPDSIEPRIRRMVASSIPGL 181 >gi|217425426|ref|ZP_03456920.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 576] gi|217391677|gb|EEC31705.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 576] Length = 274 Score = 120 bits (302), Expect = 5e-25, Method: Composition-based stats. Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 6/186 (3%) Query: 30 LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDNGSS---ISV 85 LV +L + A + + LY L DVN + VAL E +D + S +G ++V Sbjct: 11 LVVRLLGVLALSVLLAGCKKELYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLNV 70 Query: 86 PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145 + A L +GLP S + LF K T + I + + E++ T+ Sbjct: 71 DGDQLVHAMEVLRTRGLPRSKFDDLGNLFKKD-GLVSTPTEERIRFIYGMSQELSSTLSK 129 Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDM 204 I G++ ARV IV+P+ + +A+V I+ + + I+ LV +V L Sbjct: 130 IDGVLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTY 189 Query: 205 GDVTVL 210 V+V Sbjct: 190 DQVSVT 195 >gi|329901481|ref|ZP_08272819.1| Type III secretory pathway, lipoprotein EscJ [Oxalobacteraceae bacterium IMCC9480] gi|327549089|gb|EGF33689.1| Type III secretory pathway, lipoprotein EscJ [Oxalobacteraceae bacterium IMCC9480] Length = 245 Score = 120 bits (302), Expect = 5e-25, Method: Composition-based stats. Identities = 43/170 (25%), Positives = 79/170 (46%), Gaps = 8/170 (4%) Query: 48 YDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSS 105 NL L+ +D N I L I+ + + G +++V + V +A + A GLP Sbjct: 1 MSNLQTNLQDADANEIVALLRHNGIEAKKVTAKEGITLTVHEADVPRATDIMRAAGLPKR 60 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 S + +F K T + + + AL E+ T+Q +V+ARVH+V+P+ + Sbjct: 61 SLANLGTVF-KKEGMISTPLEERVRYIHALSEELEFTLQQFDHVVSARVHVVLPERIAPG 119 Query: 166 KIGARPTASVMIRAINP-SVYKSAEAIRHLVAAAVPNLD----MGDVTVL 210 + +A+V ++ P + I +LVA+++P L V+V+ Sbjct: 120 EPIQPSSAAVFVKYTEPFDEDTNIPRITNLVASSIPGLSGIEGRSKVSVV 169 >gi|330963702|gb|EGH63962.1| type III secretion component [Pseudomonas syringae pv. actinidiae str. M302091] Length = 259 Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats. Identities = 51/197 (25%), Positives = 87/197 (44%), Gaps = 14/197 (7%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RI 76 R +L +I+ + + A +LY L + N + L I ++ Sbjct: 2 PRRCRVLRLLIVATLASLLQACDI-------DLYTNLGEREANAMLAVLLRDGIPASRKV 54 Query: 77 SDNGS-SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135 DNG + V +A L GLP S ++ E+F K N + + V AL Sbjct: 55 QDNGQLKVMVDEKRFAQAMAALDDAGLPGQSFSNMGEVF-KGNGLVSSPVQERAQMVYAL 113 Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA--EAIRH 193 E++ T+ I GI++ARVH+V+PD +++ + +ASV++R +P + I+ Sbjct: 114 SEELSHTVSQIDGILSARVHVVLPDNDLLKRVISPSSASVLVR-FDPRTDINVLIPQIKT 172 Query: 194 LVAAAVPNLDMGDVTVL 210 LVA + L V+V Sbjct: 173 LVANGISGLGYDGVSVT 189 >gi|313106063|ref|ZP_07792321.1| Flagella M-ring outer membrane protein precursor [Pseudomonas aeruginosa 39016] gi|310878823|gb|EFQ37417.1| Flagella M-ring outer membrane protein precursor [Pseudomonas aeruginosa 39016] Length = 185 Score = 120 bits (301), Expect = 6e-25, Method: Composition-based stats. Identities = 37/204 (18%), Positives = 85/204 (41%), Gaps = 29/204 (14%) Query: 360 AVVVNKGRLTEV-LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 AVV++ + G + Q LA ++V + G ++ RGD++++ + F Q Sbjct: 2 AVVLDDQMKVDAKTGEVSHQPWSADELARFTRLVQDSVGYDASRGDSVSVINAPFAPAQA 61 Query: 419 FNSGTV----QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR-LHNIDDAKKGE 473 ++ Q F DI+ + ++G L + L LR L NI KG+ Sbjct: 62 EEIDSIPFYSQPWFWDIVKQ-----------VLGVLFILVLVFGVLRPVLSNITGGGKGK 110 Query: 474 --VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF-SHSRNLQSRINSYVSKQSDLR 530 GG + + G + +D +++ + + S + +++N+ Sbjct: 111 SLAGGGGRDGDLALGESGLEGSLADDRVSIGGPSSILLPSPTEGYDAQLNA--------- 161 Query: 531 LLHMIEINEERFAKILRKWARSEI 554 + +++ + R A+++++W ++ Sbjct: 162 IKNLVAQDPGRVAQVVKEWINADE 185 >gi|325921922|ref|ZP_08183733.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Xanthomonas gardneri ATCC 19865] gi|325547624|gb|EGD18667.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Xanthomonas gardneri ATCC 19865] Length = 254 Score = 120 bits (301), Expect = 6e-25, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 6/165 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106 LY L +D N + L A +D D+G + +V P V A L G+P Sbjct: 23 LYSGLTENDANDMLAVLLTAGVDAEKLTPDDGKTWAVNAPHDQVAYALNVLRTHGMPHER 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + E+F K T + + + + ++++T+ +I G++AA V IV+P+ Sbjct: 83 HANLGEMFKKD-GLISTPTEERVRFIYGVSQQLSQTLSNIDGVIAADVQIVLPNNDPLST 141 Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 +A+V I+ S S +I+ LV +V L +V+V Sbjct: 142 SVKPSSAAVFIKFRVGSDLTSLVPSIKTLVMHSVEGLTYENVSVT 186 >gi|53722424|ref|YP_111409.1| type III secretion associated protein [Burkholderia pseudomallei K96243] gi|52212838|emb|CAH38872.1| putative type III secretion associated protein [Burkholderia pseudomallei K96243] Length = 274 Score = 120 bits (301), Expect = 6e-25, Method: Composition-based stats. Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 6/186 (3%) Query: 30 LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDNGSS---ISV 85 LV +L + A + + LY L DVN + VAL E +D + S +G ++V Sbjct: 11 LVVRLLGVLALSVLLAGCKKELYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLNV 70 Query: 86 PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145 + A L +GLP S + LF K T + I + + E++ T+ Sbjct: 71 DGDQLVHAMEVLRTRGLPRSKFDDLGNLFKKD-GLVSTPTEERIRFIYGMSQELSSTLSK 129 Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDM 204 I G++ ARV IV+P+ + +A+V I+ + + I+ LV +V L Sbjct: 130 IDGVLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTY 189 Query: 205 GDVTVL 210 V+V Sbjct: 190 DQVSVT 195 >gi|167906939|ref|ZP_02494144.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei NCTC 13177] Length = 269 Score = 120 bits (300), Expect = 7e-25, Method: Composition-based stats. Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 6/186 (3%) Query: 30 LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDNGSS---ISV 85 LV +L + A + + LY L DVN + VAL E +D + S +G ++V Sbjct: 6 LVVRLLGVLALSVLLAGCKKELYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLNV 65 Query: 86 PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145 + A L +GLP S + LF K T + I + + E++ T+ Sbjct: 66 DGDQLVHAMEVLRTRGLPRSKFDDLGNLFKKD-GLVSTPTEERIRFIYGMSQELSSTLSK 124 Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDM 204 I G++ ARV IV+P+ + +A+V I+ + + I+ LV +V L Sbjct: 125 IDGVLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTY 184 Query: 205 GDVTVL 210 V+V Sbjct: 185 DQVSVT 190 >gi|330876200|gb|EGH10349.1| type III secretion component [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 259 Score = 120 bits (300), Expect = 7e-25, Method: Composition-based stats. Identities = 51/197 (25%), Positives = 87/197 (44%), Gaps = 14/197 (7%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RI 76 R +L +I+ + + A +LY L + N + L I ++ Sbjct: 2 PRRCRVLRLLIVATLASLLQACDI-------DLYTNLGEREANAMLAVLLRDGIPASRKV 54 Query: 77 SDNGS-SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135 DNG + V +A L GLP S ++ E+F K N + + V AL Sbjct: 55 QDNGQLKVMVDEKRFAQAMAALDDAGLPGQSFSNMGEVF-KGNGLVSSPVQERAQMVYAL 113 Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA--EAIRH 193 E++ T+ I GI++ARVH+V+PD +++ + +ASV++R +P + I+ Sbjct: 114 SEELSHTVSQIDGILSARVHVVLPDNDLLKRVISPSSASVLVR-FDPRTDINVLIPQIKT 172 Query: 194 LVAAAVPNLDMGDVTVL 210 LVA + L V+V Sbjct: 173 LVANGISGLGYDGVSVT 189 >gi|14719872|gb|AAK73236.1| SctJ [Burkholderia pseudomallei] gi|48479054|gb|AAT44850.1| lipoprotein transmembrane protein [Burkholderia pseudomallei] Length = 274 Score = 120 bits (300), Expect = 7e-25, Method: Composition-based stats. Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 6/186 (3%) Query: 30 LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDNGSS---ISV 85 LV +L + A + + LY L DVN + VAL E +D + S +G ++V Sbjct: 11 LVVRLLGVLALSVLLAGCKKELYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLNV 70 Query: 86 PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145 + A L +GLP S + LF K T + I + + E++ T+ Sbjct: 71 DGDQLVHAMEVLRTRGLPRSKFDDLGNLFKKD-GLVSTPTEERIRFIYGMSQELSSTLSK 129 Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDM 204 I G++ ARV IV+P+ + +A+V I+ + + I+ LV +V L Sbjct: 130 IDGVLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTY 189 Query: 205 GDVTVL 210 V+V Sbjct: 190 DQVSVT 195 >gi|238023713|ref|YP_002907945.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family protein [Burkholderia glumae BGR1] gi|237878378|gb|ACR30710.1| Type III secretion apparatus lipoprotein, YscJ/HrcJ family protein [Burkholderia glumae BGR1] Length = 280 Score = 120 bits (300), Expect = 8e-25, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRIS----DNGSSISVPSSMVGKARIHLAAQGLPS 104 LY L DVN + VAL E +D ++ V + +A L ++GLP Sbjct: 28 KELYGNLSEQDVNEMVVALLENGVDASKETPDAGKTWTLEVDGDQMVRAMEALRSRGLPK 87 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 S ++ +LF K T + + + + E++ T+ I G++ ARV IV+P+ Sbjct: 88 SRFDNLGDLFKKD-GLVSTPTEERVRFIYGMSQELSSTLSKIDGVLVARVQIVLPNNDPL 146 Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 + +A+V I+ S + I+ LV +V L V+V Sbjct: 147 AQTIKPSSAAVFIKYRPNSDVGALVPQIKTLVMHSVEGLTYDQVSVT 193 >gi|298487098|ref|ZP_07005148.1| type III secretion system lipoprotein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158341|gb|EFH99411.1| type III secretion system lipoprotein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 259 Score = 120 bits (300), Expect = 8e-25, Method: Composition-based stats. Identities = 51/197 (25%), Positives = 87/197 (44%), Gaps = 14/197 (7%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RI 76 R +L +I+ + + A +LY L + N + L I ++ Sbjct: 2 PKRRRVLRLLIVATLASLLQACDI-------DLYTNLGEREANAMLAVLLRDGIPASRKV 54 Query: 77 SDNGS-SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135 DNG + V +A L GLP S ++ E+F K N + + V AL Sbjct: 55 QDNGQLKVMVDEKRFAQAMAALDDAGLPGQSFSNMGEIF-KGNGLVSSPVQERAQMVYAL 113 Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA--EAIRH 193 E++ T+ I GI++ARVH+V+PD +++ + +ASV++R +P + I+ Sbjct: 114 SEELSHTVSQIDGILSARVHVVLPDNDLLKRVISPSSASVLVR-FDPRTDINVLIPQIKT 172 Query: 194 LVAAAVPNLDMGDVTVL 210 LVA + L V+V Sbjct: 173 LVANGISGLGYDGVSVT 189 >gi|254186712|ref|ZP_04893228.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei Pasteur 52237] gi|254263992|ref|ZP_04954857.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 1710a] gi|157934396|gb|EDO90066.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei Pasteur 52237] gi|254214994|gb|EET04379.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 1710a] Length = 269 Score = 120 bits (300), Expect = 8e-25, Method: Composition-based stats. Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 6/186 (3%) Query: 30 LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDNGSS---ISV 85 LV +L + A + + LY L DVN + VAL E +D + S +G ++V Sbjct: 6 LVVRLLGVLALSVLLAGCKKELYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLNV 65 Query: 86 PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145 + A L +GLP S + LF K T + I + + E++ T+ Sbjct: 66 DGDQLVHAMEVLRTRGLPRSKFDDLGNLFKKD-GLVSTPTEERIRFIYGMSQELSSTLSK 124 Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDM 204 I G++ ARV IV+P+ + +A+V I+ + + I+ LV +V L Sbjct: 125 IDGVLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTY 184 Query: 205 GDVTVL 210 V+V Sbjct: 185 DQVSVT 190 >gi|167742984|ref|ZP_02415758.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 14] Length = 274 Score = 120 bits (300), Expect = 9e-25, Method: Composition-based stats. Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 6/186 (3%) Query: 30 LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDNGSS---ISV 85 LV +L + A + + LY L DVN + VAL E +D + S +G ++V Sbjct: 11 LVVRLLGVLALSVLLAGCKKELYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLNV 70 Query: 86 PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145 + A L +GLP S + LF K T + I + + E++ T+ Sbjct: 71 DGDQLVHAMEVLRTRGLPRSKFDDLGNLFKKD-GLVSTPTEERIRFIYGMSQELSSTLSK 129 Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDM 204 I G++ ARV IV+P+ + +A+V I+ + + I+ LV +V L Sbjct: 130 IDGVLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTY 189 Query: 205 GDVTVL 210 V+V Sbjct: 190 DQVSVT 195 >gi|188992467|ref|YP_001904477.1| HrcJ protein [Xanthomonas campestris pv. campestris str. B100] gi|167734227|emb|CAP52435.1| HrcJ protein [Xanthomonas campestris pv. campestris] Length = 254 Score = 120 bits (300), Expect = 9e-25, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 6/165 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106 LY L +D N + L A +D D+G + +V P V A L G+P Sbjct: 23 LYSGLTENDANDMLAVLLTAGVDAEKLTPDDGKTWAVNAPHDQVAYALNVLRTHGMPHER 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + E+F K T + + + + ++++T+ +I G++AA V IV+P+ Sbjct: 83 HANLGEMFKKD-GLISTPTEERVRFIYGVSQQLSQTLSNIDGVIAADVQIVLPNNDPLSA 141 Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 +A+V I+ S S +I+ LV +V L +V+V Sbjct: 142 SVKPSSAAVFIKFRVGSDLTSLVPSIKTLVMHSVEGLTYENVSVT 186 >gi|167915298|ref|ZP_02502389.1| type III secretion associated protein [Burkholderia pseudomallei 112] Length = 262 Score = 120 bits (300), Expect = 9e-25, Method: Composition-based stats. Identities = 48/193 (24%), Positives = 81/193 (41%), Gaps = 15/193 (7%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDNGS 81 + L V+ + ++L LY L DVN + VAL E +D + S +G Sbjct: 1 MRLLGVLALSVLLAGCK---------KELYTGLSEQDVNEMMVALLENGVDASKDSADGG 51 Query: 82 S---ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 ++V + A L +GLP S + LF K T + I + + E Sbjct: 52 KSWKLNVDGDQLVHAMEVLRTRGLPRSKFDDLGNLFKKD-GLVSTPTEERIRFIYGMSQE 110 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAA 197 ++ T+ I G++ ARV IV+P+ + +A+V I+ + + I+ LV Sbjct: 111 LSSTLSKIDGVLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMH 170 Query: 198 AVPNLDMGDVTVL 210 +V L V+V Sbjct: 171 SVEGLTYDQVSVT 183 >gi|126442940|ref|YP_001062988.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Burkholderia pseudomallei 668] gi|126458134|ref|YP_001075935.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Burkholderia pseudomallei 1106a] gi|167828530|ref|ZP_02460001.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 9] gi|226199084|ref|ZP_03794646.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei Pakistan 9] gi|242313688|ref|ZP_04812705.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 1106b] gi|254183797|ref|ZP_04890389.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 1655] gi|254193806|ref|ZP_04900238.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei S13] gi|254301608|ref|ZP_04969052.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 406e] gi|126222431|gb|ABN85936.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 668] gi|126231902|gb|ABN95315.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 1106a] gi|157811474|gb|EDO88644.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 406e] gi|169650557|gb|EDS83250.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei S13] gi|184214330|gb|EDU11373.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 1655] gi|225928859|gb|EEH24884.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei Pakistan 9] gi|242136927|gb|EES23330.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 1106b] Length = 269 Score = 120 bits (300), Expect = 9e-25, Method: Composition-based stats. Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 6/186 (3%) Query: 30 LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDNGSS---ISV 85 LV +L + A + + LY L DVN + VAL E +D + S +G ++V Sbjct: 6 LVVRLLGVLALSVLLAGCKKELYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLNV 65 Query: 86 PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145 + A L +GLP S + LF K T + I + + E++ T+ Sbjct: 66 DGDQLVHAMEVLRTRGLPRSKFDDLGNLFKKD-GLVSTPTEERIRFIYGMSQELSSTLSK 124 Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDM 204 I G++ ARV IV+P+ + +A+V I+ + + I+ LV +V L Sbjct: 125 IDGVLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTY 184 Query: 205 GDVTVL 210 V+V Sbjct: 185 DQVSVT 190 >gi|21230690|ref|NP_636607.1| HrcJ protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769315|ref|YP_244077.1| HrcJ protein [Xanthomonas campestris pv. campestris str. 8004] gi|21112279|gb|AAM40531.1| HrcJ protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574647|gb|AAY50057.1| HrcJ protein [Xanthomonas campestris pv. campestris str. 8004] Length = 254 Score = 119 bits (299), Expect = 1e-24, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 6/165 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106 LY L +D N + L A +D D+G + +V P V A L G+P Sbjct: 23 LYSGLTENDANDMLAVLLTAGVDAEKLTPDDGKTWAVNAPHDQVAYALNVLRTHGMPHER 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + E+F K T + + + + ++++T+ +I G++AA V IV+P+ Sbjct: 83 HANLGEMFKKD-GLISTPTEERVRFIYGVSQQLSQTLSNIDGVIAADVQIVLPNNDPLSA 141 Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 +A+V I+ S S +I+ LV +V L +V+V Sbjct: 142 SVKPSSAAVFIKFRVGSDLTSLVPSIKTLVMHSVEGLTYENVSVT 186 >gi|167898597|ref|ZP_02485998.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 7894] gi|237509740|ref|ZP_04522455.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei MSHR346] gi|235001945|gb|EEP51369.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei MSHR346] Length = 269 Score = 119 bits (299), Expect = 1e-24, Method: Composition-based stats. Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 6/186 (3%) Query: 30 LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDNGSS---ISV 85 LV +L + A + + LY L DVN + VAL E +D + S +G ++V Sbjct: 6 LVVRLLGVLALSVLLAGCKKELYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLNV 65 Query: 86 PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145 + A L +GLP S + LF K T + I + + E++ T+ Sbjct: 66 DGDQLVHAMEVLRTRGLPRSKFDDLGNLFKKD-GLVSTPTEERIRFIYGMSQELSSTLSK 124 Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDM 204 I G++ ARV IV+P+ + +A+V I+ + + I+ LV +V L Sbjct: 125 IDGVLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTY 184 Query: 205 GDVTVL 210 V+V Sbjct: 185 DQVSVT 190 >gi|237800789|ref|ZP_04589250.1| type III secretion component [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023647|gb|EGI03704.1| type III secretion component [Pseudomonas syringae pv. oryzae str. 1_6] Length = 259 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 46/165 (27%), Positives = 77/165 (46%), Gaps = 7/165 (4%) Query: 51 LYVKLEVSDVNRISVALSEANIDF--RISDNGS-SISVPSSMVGKARIHLAAQGLPSSSS 107 LY L + N + L I ++ DNG + V +A L GLP + Sbjct: 27 LYTNLGEREANAMLAVLLRDGIPASRKVQDNGQLKVMVDEKRFAEAMAALDDAGLPGQTF 86 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 ++ E+F K N + + V AL E++ T+ I GI++ARVH+V+PD +++ Sbjct: 87 SNMGEVF-KGNGLVSSPVQERAQMVYALSEELSHTVSQIDGILSARVHVVLPDNDLLKRV 145 Query: 168 GARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVL 210 + +ASV++R +P + I+ LVA + L V+V Sbjct: 146 ISPSSASVLVR-YDPRTDINVLIPQIKTLVANGISGLGYDGVSVT 189 >gi|331008651|gb|EGH88707.1| type III secretion component [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 259 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 51/197 (25%), Positives = 87/197 (44%), Gaps = 14/197 (7%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RI 76 R +L +I+ + + A +LY L + N + L I ++ Sbjct: 2 PKRRRVLRLLIVATLASLLQACDI-------DLYTNLGEREANAMLAVLLRDGIPASRKV 54 Query: 77 SDNGS-SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135 DNG + V +A L GLP S ++ E+F K N + + V AL Sbjct: 55 QDNGQLKVMVDEKRFAQAMAALDDAGLPGQSFSNMGEVF-KGNGLVSSPVQERAQMVYAL 113 Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA--EAIRH 193 E++ T+ I GI++ARVH+V+PD +++ + +ASV++R +P + I+ Sbjct: 114 SEELSHTVSQIDGILSARVHVVLPDNDLLKRVISPSSASVLVR-FDPRTDINVLIPQIKT 172 Query: 194 LVAAAVPNLDMGDVTVL 210 LVA + L V+V Sbjct: 173 LVANGISGLGYDGVSVT 189 >gi|76818699|ref|YP_335583.1| lipoprotein transmembrane protein [Burkholderia pseudomallei 1710b] gi|76583172|gb|ABA52646.1| lipoprotein transmembrane protein [Burkholderia pseudomallei 1710b] Length = 262 Score = 118 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 48/193 (24%), Positives = 81/193 (41%), Gaps = 15/193 (7%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDNGS 81 + L V+ + ++L LY L DVN + VAL E +D + S +G Sbjct: 1 MRLLGVLALSVLLAGCK---------KELYTGLSEQDVNEMMVALLENGVDASKDSADGG 51 Query: 82 S---ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 ++V + A L +GLP S + LF K T + I + + E Sbjct: 52 KSWKLNVDGDQLVHAMEVLRTRGLPRSKFDDLGNLFKKD-GLVSTPTEERIRFIYGMSQE 110 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAA 197 ++ T+ I G++ ARV IV+P+ + +A+V I+ + + I+ LV Sbjct: 111 LSSTLSKIDGVLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMH 170 Query: 198 AVPNLDMGDVTVL 210 +V L V+V Sbjct: 171 SVEGLTYDQVSVT 183 >gi|167820155|ref|ZP_02451835.1| type III secretion associated protein [Burkholderia pseudomallei 91] Length = 262 Score = 118 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 48/193 (24%), Positives = 81/193 (41%), Gaps = 15/193 (7%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDNGS 81 + L V+ + ++L LY L DVN + VAL E +D + S +G Sbjct: 1 MRLLGVLALSVLLAGCK---------KELYTGLSEQDVNEMMVALLENGVDASKDSADGG 51 Query: 82 S---ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 ++V + A L +GLP S + LF K T + I + + E Sbjct: 52 KSWKLNVDGDQLVHAMEVLRTRGLPRSKFDDLGNLFKKD-GLVSTPTEERIRFIYGMSQE 110 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAA 197 ++ T+ I G++ ARV IV+P+ + +A+V I+ + + I+ LV Sbjct: 111 LSSTLSKIDGVLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMH 170 Query: 198 AVPNLDMGDVTVL 210 +V L V+V Sbjct: 171 SVEGLTYDQVSVT 183 >gi|167724015|ref|ZP_02407251.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei DM98] gi|167849989|ref|ZP_02475497.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei B7210] Length = 262 Score = 118 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 48/193 (24%), Positives = 81/193 (41%), Gaps = 15/193 (7%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDNGS 81 + L V+ + ++L LY L DVN + VAL E +D + S +G Sbjct: 1 MRLLGVLALSVLLAGCK---------KELYTGLSEQDVNEMMVALLENGVDASKDSADGG 51 Query: 82 S---ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 ++V + A L +GLP S + LF K T + I + + E Sbjct: 52 KSWKLNVDGDQLVHAMEVLRTRGLPRSKFDDLGNLFKKD-GLVSTPTEERIRFIYGMSQE 110 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAA 197 ++ T+ I G++ ARV IV+P+ + +A+V I+ + + I+ LV Sbjct: 111 LSSTLSKIDGVLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMH 170 Query: 198 AVPNLDMGDVTVL 210 +V L V+V Sbjct: 171 SVEGLTYDQVSVT 183 >gi|330985209|gb|EGH83312.1| type III secretion component [Pseudomonas syringae pv. lachrymans str. M301315] Length = 259 Score = 118 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 50/197 (25%), Positives = 86/197 (43%), Gaps = 14/197 (7%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RI 76 R +L +I+ + + +LY L + N + L I ++ Sbjct: 2 PKRRRVLRLLIVATLASLLQTCDI-------DLYTNLGEREANAMLAVLLRDGIPASRKV 54 Query: 77 SDNGS-SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135 DNG + V +A L GLP S ++ E+F K N + + V AL Sbjct: 55 QDNGQLKVMVDEKRFAQAMAALDDAGLPGQSFSNMGEVF-KGNGLVSSPVQERAQMVYAL 113 Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA--EAIRH 193 E++ T+ I GI++ARVH+V+PD +++ + +ASV++R +P + I+ Sbjct: 114 SEELSHTVSQIDGILSARVHVVLPDNDLLKRVISPSSASVLVR-FDPRTDINVLIPQIKT 172 Query: 194 LVAAAVPNLDMGDVTVL 210 LVA + L V+V Sbjct: 173 LVANGISGLGYDGVSVT 189 >gi|302185345|ref|ZP_07262018.1| putative type III secretion protein [Pseudomonas syringae pv. syringae 642] gi|256259415|gb|ACU65052.1| HrcJ [Pseudomonas syringae pv. syringae] Length = 276 Score = 118 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 46/187 (24%), Positives = 84/187 (44%), Gaps = 8/187 (4%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMV 90 + + L+ KL +D N + LS +I+ R + G S+ + +S + Sbjct: 8 LGMIGLVLLLSACGDEIELHGKLSENDANDVIAELSSKHIEATKRSNKEGVSVLLSASDI 67 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 +A L A GLP + + E+F K T + + AL E+ T+ I G++ Sbjct: 68 NRAVRVLEAAGLPRRTRTNLGEIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVI 126 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTV 209 ARVH+V+P+ + + +A+V I+ + IR +V++++P + Sbjct: 127 VARVHVVLPERVAPGEPVQPASAAVFIKHAASLDPDTVLPRIRRMVSSSIPGM----AGA 182 Query: 210 LDSTGKL 216 LD+T KL Sbjct: 183 LDNTEKL 189 >gi|254469855|ref|ZP_05083260.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Pseudovibrio sp. JE062] gi|211961690|gb|EEA96885.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Pseudovibrio sp. JE062] Length = 267 Score = 118 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 78/165 (47%), Gaps = 5/165 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLPSS 105 +LY L + N + L E + + + D ++ V + +A L A GLP Sbjct: 21 TDLYTNLSEQEANTMLSLLLENGVSAQKVGLGDGLVTLQVDDDDIQRAVTILNANGLPKR 80 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 + ++ ++F K + + F + I + AL E++ TI I GIV+ARVHIV+P+ Sbjct: 81 ARDTLGQVFQK-SGIISSPFEERIRFIYALSEEVSETITEIDGIVSARVHIVLPEKADLG 139 Query: 166 KIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209 + +A++ I+ + I+ LV+ A+ ++ V+V Sbjct: 140 EEVKPSSAAIFIKHRPEFDIEFLIPQIKRLVSNAIEGVEYASVSV 184 >gi|71734790|ref|YP_274723.1| type III secretion component [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555343|gb|AAZ34554.1| type III secretion component, putative [Pseudomonas syringae pv. phaseolicola 1448A] gi|320324510|gb|EFW80587.1| type III secretion component, putative [Pseudomonas syringae pv. glycinea str. B076] gi|320328370|gb|EFW84373.1| type III secretion component, putative [Pseudomonas syringae pv. glycinea str. race 4] gi|330882195|gb|EGH16344.1| type III secretion component [Pseudomonas syringae pv. glycinea str. race 4] Length = 259 Score = 118 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 51/197 (25%), Positives = 87/197 (44%), Gaps = 14/197 (7%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RI 76 R +L +I+ + + A +LY L + N + L I ++ Sbjct: 2 PKRRRVLRLLIVATLASLLQACDI-------DLYTNLGEREANAMLAVLLRDGIPASRKV 54 Query: 77 SDNGS-SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135 DNG + V +A L GLP S ++ E+F K N + + V AL Sbjct: 55 QDNGQLKVMVDEKRFAQAMAALDDAGLPGQSFSNMGEVF-KGNGLVSSPVQERAQMVYAL 113 Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA--EAIRH 193 E++ T+ I GI++ARVH+V+PD +++ + +ASV++R +P + I+ Sbjct: 114 SEELSHTVSQIDGILSARVHVVLPDNDLLKRVISPSSASVLVR-FDPRTDINVLIPQIKT 172 Query: 194 LVAAAVPNLDMGDVTVL 210 LVA + L V+V Sbjct: 173 LVANGISGLGYDGVSVT 189 >gi|282890725|ref|ZP_06299245.1| type III secretion lipoprotein SctJ [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499318|gb|EFB41617.1| type III secretion lipoprotein SctJ [Parachlamydia acanthamoebae str. Hall's coccus] Length = 304 Score = 118 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 51/199 (25%), Positives = 82/199 (41%), Gaps = 17/199 (8%) Query: 28 VILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI---DFRISDNGSS-- 82 I+ + LF++ + + + D N I V L+ NI S+ G + Sbjct: 4 TIVKIVYLFISLFLLTSCSSERTIVHGIREQDANEIIVFLNSKNIESTKVESSEGGGTGP 63 Query: 83 -------ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135 I VP + A L +GLP S ++F +S + + I L Sbjct: 64 QKAVFWDIQVPENKAMDAMSFLDEEGLPRKHQESLLDIFGS-SSLVPSETQERIRYQAGL 122 Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARP-TASVMIRAINPSVYKSAE---AI 191 +IA TI+ I G++ A V I P+ + P TASV I+ +++ I Sbjct: 123 AQQIANTIKEIDGVIDANVMISFPEENPITGTTSGPITASVYIKHNGILDDPNSQLRSKI 182 Query: 192 RHLVAAAVPNLDMGDVTVL 210 R LVAA+V L +VT++ Sbjct: 183 RQLVAASVTGLKYDNVTII 201 >gi|146305070|ref|YP_001185535.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Pseudomonas mendocina ymp] gi|145573271|gb|ABP82803.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Pseudomonas mendocina ymp] Length = 272 Score = 118 bits (295), Expect = 3e-24, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 74/164 (45%), Gaps = 4/164 (2%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPS 104 +L+ L D N + +L E I R G ++V ++ + +A L A GLP Sbjct: 20 DRTDLFSGLSELDANEVIASLGEHRISARKRAEKAGVVVTVDTAEINRAVRVLEAAGLPR 79 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + S E+F K T + + AL E+ T+ I G++ ARVH+V+P+ + Sbjct: 80 RARTSLGEIFKKEGVI-STPLEERARYIYALSQELESTLSQIDGVIVARVHVVLPERIAP 138 Query: 165 RKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDV 207 + +A+V I+ + + I+ +V +++P L V Sbjct: 139 GEPVQPASAAVFIKHAASLEPDAVQRRIQQMVVSSIPGLASTGV 182 >gi|120609169|ref|YP_968847.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Acidovorax citrulli AAC00-1] gi|58700620|gb|AAW81011.1| HrcJ [Acidovorax citrulli] gi|120587633|gb|ABM31073.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Acidovorax citrulli AAC00-1] Length = 287 Score = 118 bits (295), Expect = 3e-24, Method: Composition-based stats. Identities = 46/165 (27%), Positives = 74/165 (44%), Gaps = 6/165 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSMVGKARIHLAAQGLPSSS 106 LY K +D N + AL E+ ID SD G + + V S V ++ L + GLP Sbjct: 35 LYTKQTEADANDMVAALLESGIDAGKATSDAGKTWNVQVEKSDVVRSLAVLRSYGLPRER 94 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + E+F K T + + + + ++ T+ I G+V ARV IV+P+ Sbjct: 95 HATLGEMF-KKEGLISTPTEERVRFIYGVAQQLEATLSQIDGVVTARVQIVLPNNDPLAS 153 Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 +ASV I+ + I+++VA +V L +VTV Sbjct: 154 TVKPASASVFIKYRESANIAGLTAGIKNMVARSVEGLTYENVTVT 198 >gi|289624381|ref|ZP_06457335.1| type III secretion component, putative [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646620|ref|ZP_06477963.1| type III secretion component, putative [Pseudomonas syringae pv. aesculi str. 2250] gi|330868635|gb|EGH03344.1| type III secretion component [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 259 Score = 118 bits (295), Expect = 3e-24, Method: Composition-based stats. Identities = 51/197 (25%), Positives = 87/197 (44%), Gaps = 14/197 (7%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RI 76 R +L +I+ + + A +LY L + N + L I ++ Sbjct: 2 PKRRRVLRLLIVATLASLLQACDI-------DLYTNLGEREANAMLAVLLRDGIPASRKV 54 Query: 77 SDNGS-SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135 DNG + V +A L GLP S ++ E+F K N + + V AL Sbjct: 55 QDNGQLKVMVDEKRFVQAMAALDDAGLPGQSFSNMGEIF-KGNGLVSSPVQERAQMVYAL 113 Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA--EAIRH 193 E++ T+ I GI++ARVH+V+PD +++ + +ASV++R +P + I+ Sbjct: 114 SEELSHTVSQIDGILSARVHVVLPDNDLLKRVISPSSASVLVR-FDPRTDINVLIPQIKT 172 Query: 194 LVAAAVPNLDMGDVTVL 210 LVA + L V+V Sbjct: 173 LVANGISGLGYDGVSVT 189 >gi|13475299|ref|NP_106863.1| nodulation protein NOLT [Mesorhizobium loti MAFF303099] gi|14026050|dbj|BAB52649.1| nodulation protein; NolT [Mesorhizobium loti MAFF303099] Length = 279 Score = 117 bits (294), Expect = 4e-24, Method: Composition-based stats. Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 5/166 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANI-DFRIS--DNGSSISVPSSMVGKARIHLAAQGLPSS 105 +LY +L+ + N + L + + R++ D S++ V ++ + L +GLP Sbjct: 26 VDLYTQLQEREANEMLALLMDNGVHAVRVAAKDGTSTVQVDEKLLAYSIDLLNGKGLPRQ 85 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 S + E+F + + + + V AL E++RTI I G+ + RVH+V+P R Sbjct: 86 SFKNLGEIF-QGSGLIASPTEERARYVYALSEELSRTISDIDGVFSVRVHVVLPHNDLLR 144 Query: 166 KIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 +ASV IR + I+ LVA ++ L V V+ Sbjct: 145 AGATPSSASVFIRHDAKADLSVLLPKIKMLVADSIEGLSYDKVEVV 190 >gi|300693814|ref|YP_003749787.1| type III secretion system lipoprotein hrcj [Ralstonia solanacearum PSI07] gi|299075851|emb|CBJ35160.1| Type III secretion system lipoprotein HrcJ [Ralstonia solanacearum PSI07] Length = 269 Score = 117 bits (294), Expect = 4e-24, Method: Composition-based stats. Identities = 42/197 (21%), Positives = 82/197 (41%), Gaps = 15/197 (7%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS- 77 R R L + + +L L+ +L +D N + L +A +D + + Sbjct: 8 RLRRGALVVALALTTLLAGCN---------KQLFAQLTEADANDMLTVLLQAGVDAQKTS 58 Query: 78 -DNGSS--ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134 D+G + + V ++ L A GLP + ++F K T + + + Sbjct: 59 PDDGKTWSVLVDDDAFARSMEVLHAHGLPREKYANLGDIFKKD-GLISTPTEERVRFIYG 117 Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRH 193 + ++++T+ I G+ A V IV+P+ + +ASV I+ + S +I++ Sbjct: 118 VSQQLSQTLSRIDGVAVASVQIVLPNNDPLASVVKPSSASVFIKYRPTANVTSLLPSIKN 177 Query: 194 LVAAAVPNLDMGDVTVL 210 LV +V L +V V Sbjct: 178 LVVHSVEGLTYENVAVT 194 >gi|134282581|ref|ZP_01769285.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 305] gi|134246138|gb|EBA46228.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 305] Length = 269 Score = 117 bits (294), Expect = 4e-24, Method: Composition-based stats. Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 6/186 (3%) Query: 30 LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDNGSS---ISV 85 LV +L + A + + LY L DVN + VAL E +D + S +G ++V Sbjct: 6 LVVRLLGVLALSVLLAGCKKELYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLNV 65 Query: 86 PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145 + A L +GLP S + LF K T + I + + E++ T+ Sbjct: 66 DGDQLVHAMEVLRTRGLPRSKFDDLGNLFKKD-GLVSTPTEERIRFIYGMSQELSSTLSK 124 Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDM 204 I G++ ARV IV+P+ + +A+V I+ + + I+ LV +V L Sbjct: 125 IDGVLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALTPQIKTLVMHSVEGLTY 184 Query: 205 GDVTVL 210 V+V Sbjct: 185 DQVSVT 190 >gi|300310135|ref|YP_003774227.1| type III secretion HrcJ lipoprotein [Herbaspirillum seropedicae SmR1] gi|300072920|gb|ADJ62319.1| type III secretion HrcJ lipoprotein [Herbaspirillum seropedicae SmR1] Length = 292 Score = 117 bits (294), Expect = 4e-24, Method: Composition-based stats. Identities = 43/175 (24%), Positives = 80/175 (45%), Gaps = 8/175 (4%) Query: 48 YDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSS 105 L L +D N I + L+ I+ + +G ++ V + +A + A GLP Sbjct: 26 MVVLQAALNDADANEIILVLNRKGIEVDKQKGKDGVTLLVKDVELSRATETMNAAGLPRR 85 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 S ++ E+F K + + I + L E+ T+ +V+ARVH+V+P+ + Sbjct: 86 SLSNLGEVF-KKQGMISSPMEERIRYIHGLSEELESTMLQFDHVVSARVHVVLPERIAPG 144 Query: 166 KIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGD----VTVLDSTGK 215 + +A+V ++ P + IR LVA+++P L D V+V+ G+ Sbjct: 145 EPIQPSSAAVFVKYRPPLDEDAVMPRIRRLVASSIPGLASEDGRSKVSVVMMPGE 199 >gi|166714023|ref|ZP_02245230.1| HrpB3 [Xanthomonas oryzae pv. oryzicola BLS256] gi|61219462|gb|AAX40639.1| HrpB3 [Xanthomonas oryzae pv. oryzicola] Length = 254 Score = 117 bits (293), Expect = 5e-24, Method: Composition-based stats. Identities = 43/181 (23%), Positives = 79/181 (43%), Gaps = 6/181 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106 LY L +D N + L A +D D+G + +V PS V + L A GLP Sbjct: 23 LYSGLTENDANAMLEVLLHAGVDASKVTPDDGKTWAVNAPSDQVSYSLETLRAHGLPHER 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + E+F K T + + + + ++++T+ +I G+++A V IV+P+ Sbjct: 83 HANLGEMFKKD-GLISTPTEERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPNNDPLAT 141 Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN 225 +A+V I+ S S I+ +V +V L +V+V G + ++ + Sbjct: 142 SVKPSSAAVFIKFRVGSDLTSMVPNIKTMVMHSVEGLTYENVSVTLVPGGAESDAQLAAS 201 Query: 226 I 226 Sbjct: 202 A 202 >gi|319795607|ref|YP_004157247.1| type III secretion apparatus lipoprotein, yscj/hrcj family [Variovorax paradoxus EPS] gi|315598070|gb|ADU39136.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Variovorax paradoxus EPS] Length = 267 Score = 117 bits (293), Expect = 6e-24, Method: Composition-based stats. Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 5/162 (3%) Query: 52 YVKLEVSDVNRISVALSEANIDF---RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108 + L + N I VAL+ ID R+ + V S +G A L AQGLP+ Sbjct: 38 FSNLNEVEANEIVVALAAEGIDASKTRLEGTNWQVDVEESRMGTALEILRAQGLPAERYA 97 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 S ++F K T + + + A+ E+A+T++++ G+VAARVH+V+P Sbjct: 98 SMGDVFQK-QGLVSTPSEERMRYIYAVSQELAQTLRTVDGVVAARVHVVIPANDPLSDKL 156 Query: 169 ARPTASVMIRAINP-SVYKSAEAIRHLVAAAVPNLDMGDVTV 209 +A+V I+ + + A++ +VA ++ L V++ Sbjct: 157 RPSSAAVFIKHRPDVDIRLLSSALKDMVAHSIEGLSHEQVSL 198 >gi|149178729|ref|ZP_01857312.1| probable polar flagellar M-ring protein FliF [Planctomyces maris DSM 8797] gi|148842427|gb|EDL56807.1| probable polar flagellar M-ring protein FliF [Planctomyces maris DSM 8797] Length = 538 Score = 117 bits (293), Expect = 6e-24, Method: Composition-based stats. Identities = 97/575 (16%), Positives = 189/575 (32%), Gaps = 68/575 (11%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNL--YVKLEVSD 59 I Q F++ + R IL SV L+ ++ F F + Y +L + Sbjct: 6 KIYQQFSNLFQTMSGSQR---AILLSVPLLMMLAFGFLFFRDSQSSYVSLSLGKDFTTEE 62 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 V L A + S G I VP + V + L G + S ++ + +S Sbjct: 63 VIHAEEVLLRAGLT-DFSRKGQRIMVPQNEVPRYNAALIEGGGLPTDWASEWQEQFEKSS 121 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIR 178 ++ ++ R AL ++ R I++I I A V + TA+VM++ Sbjct: 122 MFVSKDQLQVMRDIALGNQLRRMIRAIPAIEDASVMWARSKKRLRWNNTTPEVTATVMVK 181 Query: 179 AINPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDS-TGKLLTANEMERNILGKSLSIVQ 235 ++R V+ VP+L VTV D TG TA++ K +S V Sbjct: 182 PRPGRELTPVLVTSLRAAVSTMVPDLTTDSVTVFDQSTGTSFTADDKNEAFDSKFISWVN 241 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 + I +L+ V + V L ++ +EI D ++ + ++ + Sbjct: 242 KHTKNYQDKILDSLSYIPDVIVNVNVDVENLKRYVERKQEISTDGSVTLQSKEQSTERSL 301 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINT-----KSIATTHD 350 + ++ E N P + + R E +K E +N Sbjct: 302 VEKPTRAE--PGARSNQP----NSLAVARGNEKNEKVTETNNEATTAPSFTWTEKEFVAA 355 Query: 351 NYKLERLSIAV------VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG------- 397 ++S+++ V R + AD A I V + Sbjct: 356 MPSTVQVSVSIPEDYYSAVALKRGIKKGEAEADIAAFKQATAAIQTEVETSIQKHVQKLI 415 Query: 398 INSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457 + D +++ S ++ ++ + + + + +F + L ++ Sbjct: 416 PSQSATDAVSVASYVRVDAEVPEIALPLTESVGEFVSQWGSTLGLGLFAIWAL---WM-- 470 Query: 458 HALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS 517 N + EV + I P +DS+ ++ + + Sbjct: 471 ------LNKSMPQMEEVNSEEIDLPL--------------KRPVDSTPEEESVKPKKEPT 510 Query: 518 RINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 + + ++ N E A +L KW S Sbjct: 511 Q---------RDEVQLLVRDNPEVAAMVLSKWIHS 536 >gi|78045985|ref|YP_362160.1| HrcJ protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325927680|ref|ZP_08188908.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Xanthomonas perforans 91-118] gi|462305|sp|P80152|HRB3_XANEU RecName: Full=Protein hrpB3; Flags: Precursor gi|398111|gb|AAA27604.1| hrpB3 [Xanthomonas campestris] gi|984880|gb|AAB08458.1| HrpB3 [Xanthomonas euvesicatoria] gi|78034415|emb|CAJ22060.1| HrcJ protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325541881|gb|EGD13395.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Xanthomonas perforans 91-118] Length = 253 Score = 117 bits (293), Expect = 6e-24, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 6/165 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106 LY L +D N + L A +D D+G + +V P V + L A GLP Sbjct: 23 LYSGLTENDANDMLEVLLHAGVDASKVTPDDGKTWAVNAPHDQVSYSLEVLRAHGLPHER 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + E+F K T + + + + ++++T+ +I G+++A V IV+P+ Sbjct: 83 HANLGEMFKKD-GLISTPTEERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPNNDPLST 141 Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 +A+V I+ S S I+ LV +V L +V+V Sbjct: 142 SVKPSSAAVFIKFRVGSDLTSLVPNIKTLVMHSVEGLTYENVSVT 186 >gi|323388146|gb|ADX60342.1| inner/outer membrane type III secretion protein RscJ [Pseudomonas fluorescens] Length = 268 Score = 117 bits (292), Expect = 6e-24, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 82/171 (47%), Gaps = 8/171 (4%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 L+ +L + N + L++ I + + +G + V +S + +A L A GLP + Sbjct: 24 VELHSRLSEQEANEVVAELADKQIRAQKVPAKDGVVVRVNASDISRAVRTLEAAGLPKLA 83 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 ++ ++F K T + + AL E+ T+ +I G++ ARVH+V+P+ + + Sbjct: 84 RSTLGDIFRKEGVI-STPLEERARYIYALSQELEATLSNIDGVIVARVHVVLPERIAPGE 142 Query: 167 IGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVLDSTGKL 216 +ASV I+ + +R +VA+++P + +++T KL Sbjct: 143 PVQPASASVFIKHDPRLEPDNIRPRVRRMVASSIPGMAA----AVENTQKL 189 >gi|307264867|ref|ZP_07546429.1| Flagellar M-ring domain protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306920125|gb|EFN50337.1| Flagellar M-ring domain protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 250 Score = 117 bits (292), Expect = 6e-24, Method: Composition-based stats. Identities = 55/310 (17%), Positives = 106/310 (34%), Gaps = 68/310 (21%) Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIRLSKDAQRSETSQPESAV 306 G N LN D + I Y P + + RSI+ K+ ++ +Q S+ Sbjct: 1 MFGPGNVVVRANVTLNFDKKTQDTIEYLPVQGNDNKGIVRSIQELKE--KATGTQGGSSP 58 Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 N P V+ + + E NYEIN + K+E +S+AVVVN Sbjct: 59 GTSSNNPPVAST---TGNGTSDYSRTETTINYEINQIKTSLVQAQGKIESISVAVVVN-- 113 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT---ITITSMDFLENQLFNSGT 423 Q +S +I +V+ A G GD+ +++ + F ++ L + Sbjct: 114 -----------QNLNNSMKQQIADLVTKAAG-----GDSLVKVSVQGIQFNQD-LLKTMQ 156 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 Q + + ++ ALV G L+ + ++ ++ A++ + + P Sbjct: 157 QQAKVSKGVPVYVWAILAALVLGGGLFLI---MMRRKKKETSLTTAEQEVLATVEPIEP- 212 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 I+ + ++ +I+ E Sbjct: 213 --------------------------------IEEIDFSEKDEKKKQIERLIKEKPELVV 240 Query: 544 KILRKWARSE 553 +++R W E Sbjct: 241 QVIRTWLNEE 250 >gi|21311402|gb|AAM46696.1|AF448202_7 HrcJ [Erwinia chrysanthemi] Length = 245 Score = 117 bits (292), Expect = 7e-24, Method: Composition-based stats. Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 4/166 (2%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHL 97 V L+ L +D N + AL +I + G SI + + +A L Sbjct: 1 MLIVGCGDRVELHRGLSENDANEVIAALGGYHIGAEKRTDKAGVSILIDVKDMERAVNIL 60 Query: 98 AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 A GLP + + ++F K T + + AL E+ T+ I G++ ARVH+V Sbjct: 61 NAAGLPRQARTNLGQVFQKTGVI-STPLEERARYIYALSQEVESTLTQIDGVLVARVHVV 119 Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNL 202 +P+ + + +A+V I+ S E IR +VA+++P L Sbjct: 120 LPERIAPGEPIQPASAAVFIKYRPELEPDSIEPRIRRMVASSIPGL 165 >gi|221200558|ref|ZP_03573600.1| bcscJ [Burkholderia multivorans CGD2M] gi|221209215|ref|ZP_03582206.1| bcscJ [Burkholderia multivorans CGD2] gi|221170905|gb|EEE03361.1| bcscJ [Burkholderia multivorans CGD2] gi|221179899|gb|EEE12304.1| bcscJ [Burkholderia multivorans CGD2M] Length = 293 Score = 117 bits (292), Expect = 7e-24, Method: Composition-based stats. Identities = 43/170 (25%), Positives = 74/170 (43%), Gaps = 10/170 (5%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDNG--------SSISVPSSMVGKARIHLAAQ 100 LY L D N++ L +A I ++ +SV + A L A Sbjct: 34 KELYSGLSEHDANQMIAVLGDAGISASKDNDARDASDRNAWQVSVADGDMQSALTVLQAN 93 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S S ELF K T + + + + +++RT+Q I G++ ARV +V+P+ Sbjct: 94 GLPKPSYASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSRTLQDIEGVIVARVQVVIPE 152 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209 +A+V IR ++ A ++ LVA ++ L +V++ Sbjct: 153 NDPLADKIKPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 202 >gi|38639339|gb|AAR25805.1| BcscJ [Burkholderia multivorans E243] Length = 293 Score = 117 bits (292), Expect = 7e-24, Method: Composition-based stats. Identities = 43/170 (25%), Positives = 74/170 (43%), Gaps = 10/170 (5%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDNG--------SSISVPSSMVGKARIHLAAQ 100 LY L D N++ L +A I ++ +SV + A L A Sbjct: 34 KELYSGLSEHDANQMIAVLGDAGISASKDNDARDASDRNAWQVSVADGDMQSALTVLQAN 93 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S S ELF K T + + + + +++RT+Q I G++ ARV +V+P+ Sbjct: 94 GLPKPSYASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSRTLQDIEGVIVARVQVVIPE 152 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209 +A+V IR ++ A ++ LVA ++ L +V++ Sbjct: 153 NDPLADKIKPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 202 >gi|323143306|ref|ZP_08077997.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Succinatimonas hippei YIT 12066] gi|322416923|gb|EFY07566.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Succinatimonas hippei YIT 12066] Length = 252 Score = 117 bits (292), Expect = 7e-24, Method: Composition-based stats. Identities = 47/193 (24%), Positives = 77/193 (39%), Gaps = 13/193 (6%) Query: 25 LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI---SDNGS 81 L S +++ ML R + LY L SD N + L + +D + NG Sbjct: 6 LGSAVILSAMLLCGCR--------EALYSNLTESDANEMLSTLLQRGVDAKKISEGKNGF 57 Query: 82 SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 +I V + ++ + LP S +F + ++ AL E++ Sbjct: 58 TIEVDEQDLVRSLEIIKEHSLPREQFQSLGSVF-SGQGMISSQTEEQARLAYALSQELSA 116 Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS-VYKSAEAIRHLVAAAVP 200 T I G++ ARVH+V+ + P+A+V IR S V +I+ A +VP Sbjct: 117 TFSRIDGVLDARVHVVLVQHEQSSGVTTPPSAAVFIRHTKESPVVDMISSIKDTTARSVP 176 Query: 201 NLDMGDVTVLDST 213 L V V+ T Sbjct: 177 GLTHDRVAVMTET 189 >gi|219566957|dbj|BAH04988.1| Hrp conserved lipoprotein transmembrane protein [Ralstonia solanacearum] Length = 269 Score = 117 bits (292), Expect = 7e-24, Method: Composition-based stats. Identities = 42/197 (21%), Positives = 82/197 (41%), Gaps = 15/197 (7%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS- 77 R R L + + +L L+ +L +D N + L +A ID + + Sbjct: 8 RLRRGALVVALALTTLLAGCN---------KQLFAQLTEADANDMLTVLLQAGIDAQKTS 58 Query: 78 -DNGSS--ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134 D+G + + V ++ L A GLP + ++F K T + + + Sbjct: 59 PDDGKTWSVLVDDDAFARSMEVLHAHGLPREKYANLGDIFKKD-GLISTPTEERVRFIYG 117 Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRH 193 + ++++T+ I G+ A V IV+P+ + +ASV I+ + + +I++ Sbjct: 118 VSQQLSQTLSRIDGVAVASVQIVLPNNDPLASVVKPSSASVFIKYRPTANVTALLPSIKN 177 Query: 194 LVAAAVPNLDMGDVTVL 210 LV +V L +V V Sbjct: 178 LVVHSVEGLTYENVAVT 194 >gi|30524897|gb|AAP34342.1|AF499777_10 HrcJ [Xanthomonas axonopodis pv. glycines] Length = 253 Score = 116 bits (291), Expect = 8e-24, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 6/165 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDF-RISDN---GSSISVPSSMVGKARIHLAAQGLPSSS 106 LY L +D N + L A +D +++ + +I+ P V + L A GLP Sbjct: 23 LYSGLTENDANDMLEVLLHAGVDASKVTPDDGKTWAINAPHDQVSYSLEVLRAHGLPHER 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + E+F K T + + + + ++++T+ +I G+++A V IV+P+ Sbjct: 83 HANLGEMFKKD-GLISTPTEERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPNNDPLST 141 Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 +A+V I+ S S I+ LV +V L +V+V Sbjct: 142 SVKPSSAAVFIKFRVGSDLTSLVPNIKTLVMHSVEGLTYENVSVT 186 >gi|310766432|gb|ADP11382.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation pathway-hrcJ protein [Erwinia sp. Ejp617] Length = 259 Score = 116 bits (291), Expect = 8e-24, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 4/159 (2%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPS 104 L L +D N ++ L +I + +G ++ V ++ + +A L A GLP Sbjct: 22 DQVELNHGLTENDANEVAAELGRYHIQAEKLANKDGITVMVDAAELNRAVHILDAAGLPR 81 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + E+F K N T + + AL E+ T+ I G++ ARVH+V+P+ + Sbjct: 82 PARTNLGEVFQK-NGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAP 140 Query: 165 RKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNL 202 + +A+V I+ E IR +VA+++P L Sbjct: 141 GEPVQPASAAVFIKYRPDLDPDIIEPRIRRMVASSLPGL 179 >gi|188532680|ref|YP_001906477.1| HrcJ protein (hrp cluster) [Erwinia tasmaniensis Et1/99] gi|188027722|emb|CAO95575.1| HrcJ protein (hrp cluster) [Erwinia tasmaniensis Et1/99] Length = 257 Score = 116 bits (291), Expect = 8e-24, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 4/161 (2%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISD--NGSSISVPSSMVGKARIHLAAQGLPS 104 L L +D N ++ L +I + +G ++ V + + +A L A GLP Sbjct: 22 DRVELNHGLTENDANEVAAELGRYHIQAEKRNNKDGITVLVNAEELNRAVHILDAAGLPR 81 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + E+F K N T + + AL E+ T+ I G++ ARVH+V+P+ + Sbjct: 82 PARTNLGEVFQK-NGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAP 140 Query: 165 RKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDM 204 + +A+V I+ E IR +VA+++P L Sbjct: 141 GEPVQPASAAVFIKYRPDLDPDVIEPRIRRMVASSLPGLAA 181 >gi|221209594|ref|ZP_03582575.1| bcscJ [Burkholderia multivorans CGD1] gi|221170282|gb|EEE02748.1| bcscJ [Burkholderia multivorans CGD1] Length = 293 Score = 116 bits (291), Expect = 8e-24, Method: Composition-based stats. Identities = 43/170 (25%), Positives = 74/170 (43%), Gaps = 10/170 (5%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDNG--------SSISVPSSMVGKARIHLAAQ 100 LY L D N++ L +A I ++ +SV + A L A Sbjct: 34 KELYSGLSEHDANQMIAVLGDAGISASKDNDARDASDRNAWQVSVADGDMQSALTVLQAN 93 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S S ELF K T + + + + +++RT+Q I G++ ARV +V+P+ Sbjct: 94 GLPKPSYASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSRTLQDIEGVIVARVQVVIPE 152 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209 +A+V IR ++ A ++ LVA ++ L +V++ Sbjct: 153 NDPLADKIKPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 202 >gi|259909704|ref|YP_002650060.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation pathway-hrcJ protein [Erwinia pyrifoliae Ep1/96] gi|76152302|gb|ABA39803.1| HrcJ [Erwinia pyrifoliae] gi|224965326|emb|CAX56858.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation pathway-hrcJ protein [Erwinia pyrifoliae Ep1/96] gi|283479790|emb|CAY75706.1| Type III secretion inner-membreane protein HrcJ [Erwinia pyrifoliae DSM 12163] Length = 259 Score = 116 bits (291), Expect = 9e-24, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 4/159 (2%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPS 104 L L +D N ++ L +I + +G ++ V ++ + +A L A GLP Sbjct: 22 DQVELNHGLTENDANEVAAELGRYHIQAEKLANKDGITVMVDAAELNRAVHILDAAGLPR 81 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + E+F K N T + + AL E+ T+ I G++ ARVH+V+P+ + Sbjct: 82 PARTNLGEVFQK-NGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAP 140 Query: 165 RKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNL 202 + +A+V I+ E IR +VA+++P L Sbjct: 141 GEPVQPASAAVFIKYRPDLDPDIIEPRIRRMVASSLPGL 179 >gi|300697469|ref|YP_003748130.1| type III secretion system lipoprotein HrcJ [Ralstonia solanacearum CFBP2957] gi|299074193|emb|CBJ53738.1| Type III secretion system lipoprotein HrcJ [Ralstonia solanacearum CFBP2957] Length = 269 Score = 116 bits (291), Expect = 9e-24, Method: Composition-based stats. Identities = 42/197 (21%), Positives = 81/197 (41%), Gaps = 15/197 (7%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS- 77 R R L + + +L L+ +L D N + L +A ID + + Sbjct: 8 RLRRGALVVALALTTLLAGCN---------KQLFAQLTEVDANDMLTVLLQAGIDAQKTS 58 Query: 78 -DNGSS--ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134 D+G + + V ++ L A GLP + ++F K T + + + Sbjct: 59 PDDGKTWSVLVDDEAFARSMEVLHAHGLPREKYANLGDIFKKD-GLISTPTEERVRFIYG 117 Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRH 193 + ++++T+ I G+ A V IV+P+ + +ASV I+ + + +I++ Sbjct: 118 VSQQLSQTLSRIDGVAVANVQIVLPNNDPLASVVKPSSASVFIKYRPTANVTALLPSIKN 177 Query: 194 LVAAAVPNLDMGDVTVL 210 LV +V L +V V Sbjct: 178 LVVHSVEGLTYENVAVT 194 >gi|207724588|ref|YP_002254985.1| hrp lipoprotein hrcj [Ralstonia solanacearum MolK2] gi|206589810|emb|CAQ36771.1| hrp conserved lipoprotein hrcj [Ralstonia solanacearum MolK2] Length = 268 Score = 116 bits (291), Expect = 9e-24, Method: Composition-based stats. Identities = 42/197 (21%), Positives = 81/197 (41%), Gaps = 15/197 (7%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS- 77 R R L + + +L L+ +L D N + L +A ID + + Sbjct: 7 RLRRGALVVALALTTLLAGCN---------KQLFAQLTEVDANDMLTVLLQAGIDAQKTT 57 Query: 78 -DNGSS--ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134 D+G + + V ++ L A GLP + ++F K T + + + Sbjct: 58 PDDGKTWSVLVDDEAFARSMEVLHAHGLPREKYANLGDIFKKD-GLISTPTEERVRFIYG 116 Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRH 193 + ++++T+ I G+ A V IV+P+ + +ASV I+ + + +I++ Sbjct: 117 VSQQLSQTLSRIDGVAVANVQIVLPNNDPLASVVKPSSASVFIKYRPTANVTALLPSIKN 176 Query: 194 LVAAAVPNLDMGDVTVL 210 LV +V L +V V Sbjct: 177 LVVHSVEGLTYENVAVT 193 >gi|17549088|ref|NP_522428.1| Hrp conserved lipoprotein HRCJ transmembrane [Ralstonia solanacearum GMI1000] gi|6066708|emb|CAB58254.1| HrpI protein [Ralstonia solanacearum] gi|17431339|emb|CAD18018.1| hrp conserved lipoprotein hrcj transmembrane [Ralstonia solanacearum GMI1000] gi|1097287|prf||2113360N hrpI gene Length = 269 Score = 116 bits (291), Expect = 1e-23, Method: Composition-based stats. Identities = 42/197 (21%), Positives = 82/197 (41%), Gaps = 15/197 (7%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS- 77 R R L + + +L L+ +L +D N + L +A ID + + Sbjct: 8 RLRRGALVVALALTTLLAGCN---------KQLFAQLTEADANDMLTVLLQAGIDAQKTS 58 Query: 78 -DNGSS--ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134 D+G + + V ++ L A GLP + ++F K T + + + Sbjct: 59 PDDGKTWSVLVDDDAFARSMEVLHAHGLPREKYANLGDIFKKD-GLISTPTEERVRFIYG 117 Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRH 193 + ++++T+ I G+ A V IV+P+ + +ASV I+ + + +I++ Sbjct: 118 VSQQLSQTLSRIDGVAVASVQIVLPNNDPLASVVKPSSASVFIKYRPTANVTALLPSIKN 177 Query: 194 LVAAAVPNLDMGDVTVL 210 LV +V L +V V Sbjct: 178 LVVHSVEGLTYENVAVT 194 >gi|299069234|emb|CBJ40494.1| Type III secretion system lipoprotein HrcJ [Ralstonia solanacearum CMR15] Length = 269 Score = 116 bits (291), Expect = 1e-23, Method: Composition-based stats. Identities = 41/197 (20%), Positives = 81/197 (41%), Gaps = 15/197 (7%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS- 77 R R L + + +L L+ +L +D N + L +A ID + + Sbjct: 8 RLRRGALVVALALTTLLAGCN---------KQLFAQLTEADANDMLTVLLQAGIDAQKTS 58 Query: 78 -DNGSS--ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134 D+G + + V ++ L GLP + ++F K T + + + Sbjct: 59 PDDGKTWSVLVDDDAFARSMEVLHGHGLPREKYANLGDIFKKD-GLISTPTEERVRFIYG 117 Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRH 193 + ++++T+ I G+ A V IV+P+ + +ASV I+ + + +I++ Sbjct: 118 VSQQLSQTLSRIDGVAVASVQIVLPNNDPLASVVKPSSASVFIKYRPTANVTALLPSIKN 177 Query: 194 LVAAAVPNLDMGDVTVL 210 LV +V L +V V Sbjct: 178 LVVHSVEGLTYENVAVT 194 >gi|207739223|ref|YP_002257616.1| hrp lipoprotein hrcj [Ralstonia solanacearum IPO1609] gi|206592596|emb|CAQ59502.1| hrp conserved lipoprotein hrcj [Ralstonia solanacearum IPO1609] Length = 267 Score = 116 bits (291), Expect = 1e-23, Method: Composition-based stats. Identities = 42/197 (21%), Positives = 81/197 (41%), Gaps = 15/197 (7%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS- 77 R R L + + +L L+ +L D N + L +A ID + + Sbjct: 6 RLRRGALVVALALTTLLAGCN---------KQLFAQLTEVDANDMLTVLLQAGIDAQKTT 56 Query: 78 -DNGSS--ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134 D+G + + V ++ L A GLP + ++F K T + + + Sbjct: 57 PDDGKTWSVLVDDEAFARSMEVLHAHGLPREKYANLGDIFKKD-GLISTPTEERVRFIYG 115 Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRH 193 + ++++T+ I G+ A V IV+P+ + +ASV I+ + + +I++ Sbjct: 116 VSQQLSQTLSRIDGVAVANVQIVLPNNDPLASVVKPSSASVFIKYRPTANVTALLPSIKN 175 Query: 194 LVAAAVPNLDMGDVTVL 210 LV +V L +V V Sbjct: 176 LVVHSVEGLTYENVAVT 192 >gi|294625833|ref|ZP_06704449.1| HrcJ protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|159024050|gb|ABW87278.1| HrcJ [Xanthomonas fuscans subsp. fuscans] gi|292599861|gb|EFF43982.1| HrcJ protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 253 Score = 116 bits (291), Expect = 1e-23, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 6/165 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106 LY L +D N + L A +D D+G + +V P V + L A GLP Sbjct: 23 LYSGLTENDANDMLEVLLHAGVDASKVTPDDGKTWAVNAPHDQVSYSLEVLRAHGLPHER 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + E+F K T + + + + ++++T+ +I G+++A V IV+P+ Sbjct: 83 HANLGEMFKKD-GLISTPTEERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPNNDPLST 141 Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 +A+V I+ S S I+ LV +V L +V+V Sbjct: 142 SVKPSSAAVFIKFRVGSDLTSLVPNIKTLVMHSVEGLTYENVSVT 186 >gi|83747854|ref|ZP_00944887.1| HrcJ [Ralstonia solanacearum UW551] gi|83725501|gb|EAP72646.1| HrcJ [Ralstonia solanacearum UW551] Length = 269 Score = 116 bits (291), Expect = 1e-23, Method: Composition-based stats. Identities = 42/197 (21%), Positives = 81/197 (41%), Gaps = 15/197 (7%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS- 77 R R L + + +L L+ +L D N + L +A ID + + Sbjct: 8 RLRRGALVVALALTTLLAGCN---------KQLFAQLTEVDANDMLTVLLQAGIDAQKTT 58 Query: 78 -DNGSS--ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134 D+G + + V ++ L A GLP + ++F K T + + + Sbjct: 59 PDDGKTWSVLVDDEAFARSMEVLHAHGLPREKYANLGDIFKKD-GLISTPTEERVRFIYG 117 Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRH 193 + ++++T+ I G+ A V IV+P+ + +ASV I+ + + +I++ Sbjct: 118 VSQQLSQTLSRIDGVAVANVQIVLPNNDPLASVVKPSSASVFIKYRPTANVTALLPSIKN 177 Query: 194 LVAAAVPNLDMGDVTVL 210 LV +V L +V V Sbjct: 178 LVVHSVEGLTYENVAVT 194 >gi|161520293|ref|YP_001583720.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Burkholderia multivorans ATCC 17616] gi|189353528|ref|YP_001949155.1| type III secretion protein SctJ [Burkholderia multivorans ATCC 17616] gi|160344343|gb|ABX17428.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia multivorans ATCC 17616] gi|189337550|dbj|BAG46619.1| type III secretion protein SctJ [Burkholderia multivorans ATCC 17616] Length = 293 Score = 116 bits (291), Expect = 1e-23, Method: Composition-based stats. Identities = 43/170 (25%), Positives = 74/170 (43%), Gaps = 10/170 (5%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDNG--------SSISVPSSMVGKARIHLAAQ 100 LY L D N++ L +A I ++ +SV + A L A Sbjct: 34 KELYSGLSEHDANQMIAVLGDAGISASKDNDARDASDRNAWQVSVADGDMQSALTVLQAN 93 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S S ELF K T + + + + +++RT+Q I G++ ARV +V+P+ Sbjct: 94 GLPKPSYASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSRTLQDIEGVIVARVQVVIPE 152 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209 +A+V IR ++ A ++ LVA ++ L +V++ Sbjct: 153 NDPLADKIKPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 202 >gi|89111146|dbj|BAE80236.1| HrcJ [Acidovorax avenae subsp. avenae] Length = 287 Score = 116 bits (290), Expect = 1e-23, Method: Composition-based stats. Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 6/165 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDF-RISDN---GSSISVPSSMVGKARIHLAAQGLPSSS 106 LY + +D N + AL E+ ID + S + ++ V S V ++ L + GLP Sbjct: 35 LYTRQTEADANDMVAALLESGIDAGKASADAGKTWNVQVEKSDVVRSLAVLRSYGLPRER 94 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + E+F K T + + + + ++ T+ I G+V ARV IV+P+ Sbjct: 95 HATLGEMF-KKEGLISTPTEERVRFIYGVAQQLEATLSQIDGVVTARVQIVLPNNDPLAS 153 Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 +ASV I+ + I+++VA +V L +VTV Sbjct: 154 TVKPASASVFIKYRESANIAGLTAGIKNMVARSVEGLTYENVTVT 198 >gi|289663765|ref|ZP_06485346.1| HrcJ protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 254 Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 6/165 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106 LY L +D N + L A +D D+G + +V P V + L A G+P Sbjct: 23 LYSGLTENDANDMLAVLLRAGVDASKVTPDDGKTWAVNAPRDQVAYSLDVLRAHGMPHER 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + E+F K T + + + + ++++T+ +I G++AA V IV+P+ Sbjct: 83 HANLGEMFKKD-GLISTPTEERVRFIYGVSQQLSQTLSNIDGVIAADVEIVLPNNDPLST 141 Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 +A+V I+ S S I+ LV +V L +V+V Sbjct: 142 SVKPSSAAVFIKFRLGSDLTSLVPNIKTLVMHSVEGLTYENVSVT 186 >gi|58579711|ref|YP_198727.1| HrpB3 [Xanthomonas oryzae pv. oryzae KACC10331] gi|84621745|ref|YP_449117.1| HrcJ protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|7350916|gb|AAF61284.1| HrpB3 [Xanthomonas oryzae pv. oryzae] gi|9711586|dbj|BAB07855.1| HrpB3 [Xanthomonas oryzae pv. oryzae] gi|24251290|gb|AAN46409.1| HrpB3 [Xanthomonas oryzae pv. oryzae] gi|50428349|dbj|BAD29986.1| HrcJ [Xanthomonas oryzae pv. oryzae] gi|58424305|gb|AAW73342.1| HrpB3 [Xanthomonas oryzae pv. oryzae KACC10331] gi|84365685|dbj|BAE66843.1| HrcJ protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 253 Score = 115 bits (289), Expect = 2e-23, Method: Composition-based stats. Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 6/165 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106 LY L +D N + L A +D D+G + +V P V + L A GLP Sbjct: 22 LYSGLTENDANDMLEVLLHAGVDASKVTPDDGKTWAVNAPHDQVSYSLEALRAHGLPHER 81 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + E+F K T + + + + ++++T+ +I G+++A V IV+P+ Sbjct: 82 HANLGEMFKKD-GLISTPTEERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPNNDPLAT 140 Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 +A+V I+ S S I+ +V +V L +V+V Sbjct: 141 SVKPSSAAVFIKFRVGSDLTSLVPNIKTMVMHSVEGLTYENVSVT 185 >gi|289668187|ref|ZP_06489262.1| HrcJ protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 246 Score = 115 bits (289), Expect = 2e-23, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 6/165 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106 LY L +D N + L A +D D+G + +V P V + L A G+P Sbjct: 15 LYSGLTENDANDMLAVLLRAGVDASKVTPDDGKTWAVNAPRDQVAYSLDVLRAHGMPHER 74 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + E+F K T + + + + ++++T+ +I G++AA V IV+P+ Sbjct: 75 HANLGEMFKKD-GLISTPTEERVRFIYGVSQQLSQTLSNIDGVIAADVEIVLPNNDPLST 133 Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 +A+V I+ S S I+ LV +V L +V+V Sbjct: 134 SVKPSSAAVFIKFRLGSDLTSLVPNIKTLVMHSVEGLTYENVSVT 178 >gi|188574352|ref|YP_001911281.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Xanthomonas oryzae pv. oryzae PXO99A] gi|188518804|gb|ACD56749.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Xanthomonas oryzae pv. oryzae PXO99A] Length = 246 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 6/165 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106 LY L +D N + L A +D D+G + +V P V + L A GLP Sbjct: 15 LYSGLTENDANDMLEVLLHAGVDASKVTPDDGKTWAVNAPHDQVSYSLEALRAHGLPHER 74 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + E+F K T + + + + ++++T+ +I G+++A V IV+P+ Sbjct: 75 HANLGEMFKKD-GLISTPTEERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPNNDPLAT 133 Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 +A+V I+ S S I+ +V +V L +V+V Sbjct: 134 SVKPSSAAVFIKFRVGSDLTSLVPNIKTMVMHSVEGLTYENVSVT 178 >gi|21241182|ref|NP_640764.1| HrcJ protein [Xanthomonas axonopodis pv. citri str. 306] gi|21106489|gb|AAM35300.1| HrcJ protein [Xanthomonas axonopodis pv. citri str. 306] Length = 253 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 6/165 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDF-RISDN---GSSISVPSSMVGKARIHLAAQGLPSSS 106 LY L +D N + L A +D +++ + +I+ P V + L A GLP Sbjct: 23 LYSGLTENDANDMLEVLLHAGVDASKVTPDDGKTWAINAPHDQVSYSLEVLRAHGLPHER 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + E+F K T + + + + ++++T+ +I G+++A V IV+P+ Sbjct: 83 HANLGEMFKKD-GLISTPTEERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPNNDPLST 141 Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 +A+V I+ S S I+ LV +V L +V+V Sbjct: 142 SVKPSSAAVFIKFRVGSDLTSLLPNIKTLVMHSVEGLTYENVSVT 186 >gi|2935534|gb|AAC38609.1| BscJ [Bordetella bronchiseptica] Length = 274 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 4/164 (2%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSS 106 L ++ N + AL EA I + G ++SVP+ V ++ L A GLP Sbjct: 33 VELLGAAPENEANEVLAALLEAGIAAQKQSGKAGYAVSVPAEAVARSLEILRASGLPREQ 92 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + +F K + + + AL E+A T+ I G+++ARVH+V+P+ G+ + Sbjct: 93 FDGMGRIFRKE-GLVSSPLEERARYIYALSQELADTLSQIDGVLSARVHVVLPERGAVGE 151 Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209 TA V ++ + + IR LV A+P L V+V Sbjct: 152 PATPSTAGVFLKYRDGQSLDALVPEIRKLVTHAIPGLAEDRVSV 195 >gi|33600610|ref|NP_888170.1| putative type III secretion protein [Bordetella bronchiseptica RB50] gi|33568209|emb|CAE32122.1| putative type III secretion protein [Bordetella bronchiseptica RB50] Length = 274 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 4/164 (2%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSS 106 L ++ N + AL EA I + G ++SVP+ V ++ L A GLP Sbjct: 33 VELLGAAPENEANEVLAALLEAGIAAQKQSGKAGYAVSVPAEAVARSLEILRASGLPREQ 92 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + +F K + + + AL E+A T+ I G+++ARVH+V+P+ G+ + Sbjct: 93 FDGMGRIFRKE-GLVSSPLEERARYIYALSQELADTLSQIDGVLSARVHVVLPERGAVGE 151 Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209 TA V ++ + + IR LV A+P L V+V Sbjct: 152 PATPSTAGVFLKYRDGQSLDALVPEIRKLVTHAIPGLAEDRVSV 195 >gi|33593247|ref|NP_880891.1| putative type III secretion protein [Bordetella pertussis Tohama I] gi|29603227|emb|CAC79572.1| bscJ [Bordetella pertussis Tohama I] gi|33563622|emb|CAE42523.1| putative type III secretion protein [Bordetella pertussis Tohama I] gi|332382656|gb|AEE67503.1| putative type III secretion protein [Bordetella pertussis CS] Length = 274 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 4/164 (2%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSS 106 L ++ N + AL EA I + G ++SVP+ V ++ L A GLP Sbjct: 33 VELLGAAPENEANEVLAALLEAGIAAQKQSGKAGYAVSVPAEAVARSLEILRASGLPREQ 92 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + +F K + + + AL E+A T+ I G+++ARVH+V+P+ G+ + Sbjct: 93 FDGMGRIFRKE-GLVSSPLEERARYIYALSQELADTLSQIDGVLSARVHVVLPERGAVGE 151 Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209 TA V ++ + + IR LV A+P L V+V Sbjct: 152 PATPSTAGVFLKYRDGQSLDALVPEIRKLVTHAIPGLAEDRVSV 195 >gi|33596836|ref|NP_884479.1| putative type III secretion protein [Bordetella parapertussis 12822] gi|33573537|emb|CAE37528.1| putative type III secretion protein [Bordetella parapertussis] Length = 274 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 4/164 (2%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSS 106 L ++ N + AL EA I + G ++SVP+ V ++ L A GLP Sbjct: 33 VELLGAAPENEANEVLAALLEAGIAAQKQSGKAGYAVSVPAEAVARSLEILRASGLPREQ 92 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + +F K + + + AL E+A T+ I G+++ARVH+V+P+ G+ + Sbjct: 93 FDGMGRIFRKE-GLVSSPLEERARYIYALSQELADTLSQIDGVLSARVHVVLPERGAVGE 151 Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209 TA V ++ + + IR LV A+P L V+V Sbjct: 152 PATPSTAGVFLKYRDGQSLDALVPEIRKLVTHAIPGLAEDRVSV 195 >gi|294665985|ref|ZP_06731248.1| HrcJ protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604233|gb|EFF47621.1| HrcJ protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 253 Score = 115 bits (287), Expect = 3e-23, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 6/165 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106 LY L +D N + L A +D D+G + +V P V + L A GLP Sbjct: 23 LYSGLTENDANDMLEVLLHAGVDASKVTPDDGKTWAVNAPHDQVSYSLEVLRAHGLPHER 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + E+F K T + + + + ++++T+ +I G+++A V IV+P+ Sbjct: 83 HANLGEMFKKD-GLISTPTEERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPNNDPLST 141 Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 +A+V I+ S S I+ LV +V L +V+V Sbjct: 142 SVKPSSAAVFIKFRVGSDLTSLVPNIKTLVMHSVEGLTYENVSVT 186 >gi|292487032|ref|YP_003529902.1| type III secretion inner-membreane protein HrcJ [Erwinia amylovora CFBP1430] gi|292900583|ref|YP_003539952.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|1336088|gb|AAB49174.1| HrcJ [Erwinia amylovora] gi|291200431|emb|CBJ47559.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|291552449|emb|CBA19494.1| Type III secretion inner-membreane protein HrcJ [Erwinia amylovora CFBP1430] Length = 260 Score = 115 bits (287), Expect = 3e-23, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 4/159 (2%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPS 104 L L +D N ++ L +I + G ++ V ++ + +A L A GLP Sbjct: 22 DQVELNHGLTENDANEVAAELGRYHIQAEKLTNKEGITVLVDAAELNRAVHILDAAGLPR 81 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + E+F K N T + + AL E+ T+ I G++ ARVH+V+P+ + Sbjct: 82 PARTNLGEVFQK-NGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAP 140 Query: 165 RKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNL 202 + +A+V I+ E IR +VA+++P L Sbjct: 141 GEPVQPASAAVFIKYRPDLDPDVIEPRIRRMVASSLPGL 179 >gi|326315351|ref|YP_004233023.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Acidovorax avenae subsp. avenae ATCC 19860] gi|89111179|dbj|BAE80268.1| HrcJ [Acidovorax avenae subsp. avenae] gi|323372187|gb|ADX44456.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 287 Score = 115 bits (287), Expect = 3e-23, Method: Composition-based stats. Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 6/165 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSMVGKARIHLAAQGLPSSS 106 L+ + +D N + AL E+ ID SD G + + V S V ++ L + GLP Sbjct: 35 LFTRQTEADANDMVAALLESGIDAGKATSDAGKTWNVQVEKSDVVRSLAVLRSYGLPRER 94 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + E+F K T + + + + ++ T+ I G+V ARV IV+P+ Sbjct: 95 HATLGEMF-KKEGLISTPTEERVRFIYGVAQQLEATLSQIDGVVTARVQIVLPNNDPLAS 153 Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 +A+V I+ + I+++VA +V L +VTV Sbjct: 154 TVKPASAAVFIKYRESANIAGLTAGIKNMVARSVEGLTYENVTVT 198 >gi|313650159|gb|EFS14572.1| flagellar M-ring domain protein [Shigella flexneri 2a str. 2457T] gi|332756093|gb|EGJ86446.1| flagellar M-ring protein domain protein [Shigella flexneri 4343-70] gi|332757293|gb|EGJ87630.1| flagellar M-ring protein domain protein [Shigella flexneri 2747-71] gi|332757503|gb|EGJ87838.1| flagellar M-ring protein domain protein [Shigella flexneri K-671] gi|332766675|gb|EGJ96879.1| flagellar M-ring family protein [Shigella flexneri 2930-71] gi|333003355|gb|EGK22901.1| flagellar M-ring protein domain protein [Shigella flexneri K-218] gi|333017575|gb|EGK36887.1| flagellar M-ring protein domain protein [Shigella flexneri K-304] Length = 205 Score = 115 bits (287), Expect = 3e-23, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 62/162 (38%), Gaps = 12/162 (7%) Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTD-----KKEEQSNYEINTKSIATTHDNYK 353 ++QP A + P + S + ++ E SNYE++ T + Sbjct: 2 SNQPAPANNAPISTPPTNQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGD 61 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 ++RLS+AVVVN L + + + +I + A G + +RGD++ + + F Sbjct: 62 VQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEALTREAMGFSEKRGDSLNVVNSPF 117 Query: 414 L---ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452 E+ Q F+D L ++ A + Sbjct: 118 NSSDESGGALPFWQQQVFIDQLLAAGRWLLVAGTAGGVVAVA 159 >gi|325917018|ref|ZP_08179257.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Xanthomonas vesicatoria ATCC 35937] gi|325536769|gb|EGD08526.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Xanthomonas vesicatoria ATCC 35937] Length = 254 Score = 114 bits (286), Expect = 3e-23, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 76/165 (46%), Gaps = 6/165 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDF-RISDN---GSSISVPSSMVGKARIHLAAQGLPSSS 106 LY L +D N + L A +D +++ + +I+ P + V + L A G+P Sbjct: 23 LYSGLTENDANDMLAVLLTAGVDAEKVTPDDGKTWAINAPHAQVAYSLEVLRAHGMPHER 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + E+F K T + + + + ++++T+ +I G++AA V IV+P+ Sbjct: 83 HANLGEMFKKD-GLISTPTEERVRFIYGVSQQLSQTLSNIDGVIAADVEIVLPNNDPLST 141 Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 +A+V I+ S S +I+ LV +V L +V+V Sbjct: 142 SVKPSSAAVFIKFRVGSDLTSLVPSIKTLVMHSVEGLTYENVSVT 186 >gi|167923131|ref|ZP_02510222.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei BCC215] Length = 243 Score = 114 bits (286), Expect = 4e-23, Method: Composition-based stats. Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 6/164 (3%) Query: 52 YVKLEVSDVNRISVALSEANIDF-RISDNGSS---ISVPSSMVGKARIHLAAQGLPSSSS 107 Y L DVN + VAL E +D + S +G ++V + A L +GLP S Sbjct: 2 YTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLNVDGDQLVHAMEVLRTRGLPRSKF 61 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 + LF K T + I + + E++ T+ I G++ ARV IV+P+ + Sbjct: 62 DDLGNLFKKD-GLVSTPTEERIRFIYGMSQELSSTLSKIDGVLVARVQIVLPNNDPLAQT 120 Query: 168 GARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 +A+V I+ + + I+ LV +V L V+V Sbjct: 121 AKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTYDQVSVT 164 >gi|312171103|emb|CBX79362.1| Type III secretion inner-membreane protein HrcJ [Erwinia amylovora ATCC BAA-2158] Length = 260 Score = 114 bits (286), Expect = 4e-23, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 4/159 (2%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPS 104 L L +D N ++ L +I + G ++ V ++ + +A L A GLP Sbjct: 22 DQVELNHGLTENDANEVAAELGRYHIQAEKLTNKEGITVLVDAAELNRAVHILDAAGLPR 81 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + E+F K N T + + AL E+ T+ I G++ ARVH+V+P+ + Sbjct: 82 PARTNLGEVFQK-NGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAP 140 Query: 165 RKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNL 202 + +A+V I+ E IR +VA+++P L Sbjct: 141 GEPVQPASAAVFIKYRPDLDPDVIEPRIRRMVASSLPGL 179 >gi|271500435|ref|YP_003333460.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Dickeya dadantii Ech586] gi|270343990|gb|ACZ76755.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Dickeya dadantii Ech586] Length = 268 Score = 114 bits (285), Expect = 4e-23, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 4/159 (2%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPS 104 L+ L +D N + AL +I + G SI + + ++ L A GLP Sbjct: 24 DRVELHRGLSENDANEVIAALGGYHIGAEKRTDKAGVSILIDVKDMERSVNILNAAGLPR 83 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + ++F K T + + AL E+ T+ I G++ ARVH+V+P+ + Sbjct: 84 QARTNLGQVFQKTGVI-STPLEERARYIYALSQEVESTLTQIDGVLVARVHVVLPERIAP 142 Query: 165 RKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNL 202 + +A+V I+ S E IR +VA+++P L Sbjct: 143 GEPIQPASAAVFIKYRPELEPDSIEPRIRRMVASSIPGL 181 >gi|326794378|ref|YP_004312198.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Marinomonas mediterranea MMB-1] gi|326545142|gb|ADZ90362.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Marinomonas mediterranea MMB-1] Length = 265 Score = 114 bits (285), Expect = 4e-23, Method: Composition-based stats. Identities = 41/165 (24%), Positives = 74/165 (44%), Gaps = 6/165 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108 L+ KL D N + L+ +I+ + + G ++ V +S + +A L A GLP Sbjct: 26 LHKKLSEEDANEVIAELASRHIEAEKKATKEGVTVLVEASSMARAVRILEAAGLPRKPRA 85 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 + E+F K + + + AL E+ TI I GI+ ARVH+V+P+ + + Sbjct: 86 NFGEVFKKEGVI-SSPLEERARYIYALSQELESTISQIDGILIARVHVVLPERIAPGEAV 144 Query: 169 ARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNL--DMGDVTVL 210 +++V I+ I LV ++P L ++V+ Sbjct: 145 QPASSAVFIKHRPDLDPDVIRPRIERLVRTSIPGLSEKPDKLSVV 189 >gi|297748689|gb|ADI51235.1| type III secretion cytoplasmic membrane protein SctJ [Chlamydia trachomatis D-EC] gi|297749569|gb|ADI52247.1| type III secretion cytoplasmic membrane protein SctJ [Chlamydia trachomatis D-LC] Length = 333 Score = 113 bits (284), Expect = 5e-23, Method: Composition-based stats. Identities = 52/195 (26%), Positives = 81/195 (41%), Gaps = 19/195 (9%) Query: 34 MLFMAARFFVNSPHYDNLYV-KLEVSDVNRISVALSEANIDFRI-----SDNGSS----- 82 + F+ A FF ++ ++ L D N I V L + + S G S Sbjct: 17 LFFILALFFCSACDSRSMITHGLSGRDANEIVVLLVSKGVAAQKVPQAASSTGGSGEQLW 76 Query: 83 -ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 ISVP++ + +A L GLP S +LF K + ++I L ++A Sbjct: 77 DISVPAAQITEALAILNQAGLPRMKGTSLLDLFAK-QGLVPSEMQEKIRYQEGLSEQMAT 135 Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEAIRHLVAAA 198 TI+ + GIV A V I + TASV I+ ++ I+ LVA+A Sbjct: 136 TIRKMDGIVDASVQISFSPEE---EDQRPLTASVYIKHRGVLDNPNSIMVSKIKRLVASA 192 Query: 199 VPNLDMGDVTVLDST 213 VP L +V+V+ Sbjct: 193 VPGLCPENVSVVSDR 207 >gi|46398281|gb|AAS91835.1| AscJ [Aeromonas hydrophila] Length = 246 Score = 113 bits (283), Expect = 8e-23, Method: Composition-based stats. Identities = 43/195 (22%), Positives = 80/195 (41%), Gaps = 15/195 (7%) Query: 21 RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI--DFRISD 78 + +L V+ ++L LY + + N + L I D + Sbjct: 2 KRSMLMGVLCTSLLLSGCK---------VELYTGVSQKEGNEMLALLQTEGISSDKQPDK 52 Query: 79 NGSS-ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137 +G+ + V S V +A L +G P S ++ ++F K + + A Sbjct: 53 DGNIKLLVEESDVAQAIETLKRKGYPRESFSTLQDVFPKD-GLISSPTEERARLTYAKAQ 111 Query: 138 EIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLV 195 EI+ T+ I G++ ARVH+V+P+ F K + +ASV I+ + I+ LV Sbjct: 112 EISNTLSEIDGVLVARVHVVLPEGNEGFNKKTSPASASVFIKHAADIQLDTYIPQIKQLV 171 Query: 196 AAAVPNLDMGDVTVL 210 ++ L ++V+ Sbjct: 172 NNSIEGLAYDRISVV 186 >gi|307131216|ref|YP_003883232.1| type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) [Dickeya dadantii 3937] gi|306528745|gb|ADM98675.1| Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) [Dickeya dadantii 3937] Length = 236 Score = 113 bits (283), Expect = 8e-23, Method: Composition-based stats. Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 4/155 (2%) Query: 51 LYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108 L+ L +D N + AL +I R G SI + + +A L A GLP + Sbjct: 3 LHRGLSENDANEVIAALGGYHIGAEKRTEKTGVSILIDVKDMERAVNILNAAGLPRQART 62 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 + ++F K T + + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 63 NLGQVFQKTGVI-STPLEERARYIYALSQEVESTLTQIDGVLVARVHVVLPERIAPGEPI 121 Query: 169 ARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNL 202 +A+V I+ S E IR +VA+++P L Sbjct: 122 QPASAAVFIKYRPELEPDSIEPRIRRMVASSIPGL 156 >gi|194292006|ref|YP_002007913.1| sctj: non flagellar t3S system conserved transmembrane lipoprotein. yscj/flif family. [Cupriavidus taiwanensis LMG 19424] gi|193225910|emb|CAQ71857.1| SctJ: non flagellar T3S system conserved transmembrane lipoprotein. yscJ/FliF family [Cupriavidus taiwanensis LMG 19424] Length = 262 Score = 113 bits (282), Expect = 9e-23, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 78/171 (45%), Gaps = 11/171 (6%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDF---RISDNGSS------ISVPSSMVGKARIHLAA 99 +LY L + N++ AL+ ID R +G + + V S + A L + Sbjct: 28 VDLYASLNEPEANQVLAALTAEGIDAEKARADTSGGTGEGQWRVRVEESQLPAALEILRS 87 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 +GLP S ++F K T + + + AL E++ T+++I G+V ARVH+V+P Sbjct: 88 EGLPGERFASLGQVFQK-QGLVATPTEERMRYIFALSQELSETLRNIDGVVTARVHVVIP 146 Query: 160 DMGSFRKIGARPTASVMIRAI-NPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209 +A+V I+ + + ++ +VA ++ + +V++ Sbjct: 147 ATDPLSDKIRPSSAAVFIKHRADTDLRLLVPTVKDMVAHSIEGVTHDNVSL 197 >gi|15605288|ref|NP_220074.1| Yop proteins translocation lipoprotein J [Chlamydia trachomatis D/UW-3/CX] gi|76789296|ref|YP_328382.1| SctJ [Chlamydia trachomatis A/HAR-13] gi|237804910|ref|YP_002889064.1| type III secretion system protein, membrane component [Chlamydia trachomatis B/TZ1A828/OT] gi|3329000|gb|AAC68161.1| Yop proteins translocation lipoprotein J [Chlamydia trachomatis D/UW-3/CX] gi|76167826|gb|AAX50834.1| SctJ [Chlamydia trachomatis A/HAR-13] gi|231273210|emb|CAX10123.1| type III secretion system protein, membrane component [Chlamydia trachomatis B/TZ1A828/OT] gi|296436092|gb|ADH18266.1| type III secretion system protein, membrane component [Chlamydia trachomatis G/9768] gi|296437020|gb|ADH19190.1| type III secretion system protein, membrane component [Chlamydia trachomatis G/11222] gi|296437953|gb|ADH20114.1| type III secretion system protein, membrane component [Chlamydia trachomatis G/11074] gi|297140453|gb|ADH97211.1| type III secretion system protein, membrane component [Chlamydia trachomatis G/9301] Length = 326 Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats. Identities = 52/195 (26%), Positives = 81/195 (41%), Gaps = 19/195 (9%) Query: 34 MLFMAARFFVNSPHYDNLYV-KLEVSDVNRISVALSEANIDFRI-----SDNGSS----- 82 + F+ A FF ++ ++ L D N I V L + + S G S Sbjct: 10 LFFILALFFCSACDSRSMITHGLSGRDANEIVVLLVSKGVAAQKVPQAASSTGGSGEQLW 69 Query: 83 -ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 ISVP++ + +A L GLP S +LF K + ++I L ++A Sbjct: 70 DISVPAAQITEALAILNQAGLPRMKGTSLLDLFAK-QGLVPSEMQEKIRYQEGLSEQMAT 128 Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEAIRHLVAAA 198 TI+ + GIV A V I + TASV I+ ++ I+ LVA+A Sbjct: 129 TIRKMDGIVDASVQISFSPEE---EDQRPLTASVYIKHRGVLDNPNSIMVSKIKRLVASA 185 Query: 199 VPNLDMGDVTVLDST 213 VP L +V+V+ Sbjct: 186 VPGLCPENVSVVSDR 200 >gi|255348939|ref|ZP_05380946.1| type III secretion system protein, membrane component [Chlamydia trachomatis 70] gi|255503478|ref|ZP_05381868.1| type III secretion system protein, membrane component [Chlamydia trachomatis 70s] gi|255507156|ref|ZP_05382795.1| type III secretion system protein, membrane component [Chlamydia trachomatis D(s)2923] gi|289525604|emb|CBJ15082.1| type III secretion system protein, membrane component [Chlamydia trachomatis Sweden2] gi|296435164|gb|ADH17342.1| type III secretion system protein, membrane component [Chlamydia trachomatis E/150] gi|296438884|gb|ADH21037.1| type III secretion system protein, membrane component [Chlamydia trachomatis E/11023] Length = 326 Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats. Identities = 52/195 (26%), Positives = 81/195 (41%), Gaps = 19/195 (9%) Query: 34 MLFMAARFFVNSPHYDNLYV-KLEVSDVNRISVALSEANIDFRI-----SDNGSS----- 82 + F+ A FF ++ ++ L D N I V L + + S G S Sbjct: 10 LFFILALFFCSACDSRSMITHGLSGRDANEIVVLLVSKGVAAQKVPQAASSTGGSGEQLW 69 Query: 83 -ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 ISVP++ + +A L GLP S +LF K + ++I L ++A Sbjct: 70 DISVPAAQITEALAILNQAGLPRMKGTSLLDLFAK-QGLVPSEMQEKIRYQEGLSEQMAT 128 Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEAIRHLVAAA 198 TI+ + GIV A V I + TASV I+ ++ I+ LVA+A Sbjct: 129 TIRKMDGIVDASVQISFSPEE---EDQRPLTASVYIKHRGVLDNPNSIMVSKIKRLVASA 185 Query: 199 VPNLDMGDVTVLDST 213 VP L +V+V+ Sbjct: 186 VPGLCPENVSVVSDR 200 >gi|166154774|ref|YP_001654892.1| type III secretion system protein, membrane component [Chlamydia trachomatis 434/Bu] gi|301336048|ref|ZP_07224292.1| type III secretion system protein, membrane component [Chlamydia trachomatis L2tet1] gi|165930762|emb|CAP04259.1| type III secretion system protein, membrane component [Chlamydia trachomatis 434/Bu] Length = 325 Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats. Identities = 52/195 (26%), Positives = 81/195 (41%), Gaps = 20/195 (10%) Query: 34 MLFMAARFFVNSPHYDNLYV-KLEVSDVNRISVALSEANIDFRI-----SDNGSS----- 82 + F+ A FF ++ ++ L D N I V L + + S G S Sbjct: 10 LFFILALFFCSACDSRSMITHGLSGRDANEIVVLLVSKGVAAQKVPQAASSTGGSGEQLW 69 Query: 83 -ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 ISVP++ + +A L GLP S +LF K + ++I L ++A Sbjct: 70 DISVPAAQITEALAILNQAGLPRMKGTSLLDLFSK-QGLVPSEMQEKIRYQEGLSEQMAT 128 Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEAIRHLVAAA 198 TI+ + GIV A V I + TASV I+ ++ I+ LVA+A Sbjct: 129 TIRKMDGIVDASVQISFSPE----EDQRPLTASVYIKHRGVLDNPNSIMVSKIKRLVASA 184 Query: 199 VPNLDMGDVTVLDST 213 VP L +V+V+ Sbjct: 185 VPGLYPENVSVVSDR 199 >gi|237802988|ref|YP_002888182.1| type III secretion system protein, membrane component [Chlamydia trachomatis B/Jali20/OT] gi|231274222|emb|CAX11016.1| type III secretion system protein, membrane component [Chlamydia trachomatis B/Jali20/OT] Length = 326 Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats. Identities = 52/195 (26%), Positives = 80/195 (41%), Gaps = 19/195 (9%) Query: 34 MLFMAARFFVNSPHYDNLYV-KLEVSDVNRISVALSEANIDFRI-----SDNGSS----- 82 + F+ A FF ++ ++ L D N I V L + + S G S Sbjct: 10 LFFILALFFCSACDSRSMITHGLSGRDANEIVVLLVSKGVAAQKVPQAASSTGGSGEQLW 69 Query: 83 -ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 ISVP++ + +A L GLP S +LF K + ++I L ++A Sbjct: 70 DISVPAAQITEALAILNQAGLPRMKGTSLLDLFAK-QGLVPSEMQEKIRYQEGLSEQMAT 128 Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS---AEAIRHLVAAA 198 TI+ + GIV A V I + TASV I+ + I+ LVA+A Sbjct: 129 TIRKMDGIVDASVQISFSPEE---EDQRPLTASVYIKYRGVLDNPNSIMVSKIKRLVASA 185 Query: 199 VPNLDMGDVTVLDST 213 VP L +V+V+ Sbjct: 186 VPGLCPENVSVVSDR 200 >gi|94496761|ref|ZP_01303336.1| hrp conserved lipoprotein hrcj transmembrane [Sphingomonas sp. SKA58] gi|94423774|gb|EAT08800.1| hrp conserved lipoprotein hrcj transmembrane [Sphingomonas sp. SKA58] Length = 246 Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats. Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 5/166 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDNG---SSISVPSSMVGKARIHLAAQGLPSS 105 +Y +L+ N + AL +A+ID S + +++V KA L A+GLP Sbjct: 24 QEIYGQLKEGQANDMIAALRDAHIDAAKSADKDGQWAVAVSPDDFSKAIQLLRAKGLPRE 83 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 + LF+K + + + L E++ T+ I G+V ARVH+ MP+ Sbjct: 84 DFANLGSLFEKK-GLVSSPVEERARLIYGLSQELSHTVSEIDGVVQARVHLAMPEADPLS 142 Query: 166 KIGARPTASVMIRAINP-SVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 +A++ ++ + AI+ LV ++ L V+V+ Sbjct: 143 DKIKPASAAIFVKYQPGYDLRSQTGAIKSLVTNSIEGLAYDKVSVV 188 >gi|325273533|ref|ZP_08139766.1| flagellar MS-ring protein [Pseudomonas sp. TJI-51] gi|324101334|gb|EGB98947.1| flagellar MS-ring protein [Pseudomonas sp. TJI-51] Length = 154 Score = 112 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 35/130 (26%), Positives = 59/130 (45%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 + F ++ + R + L + + + A + P Y LY L D ++ L Sbjct: 25 MAFLENIAQMPMLRQVGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLSGMDTKQVMDTL 84 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + A+I + + N ++ V S + +AR+ LAA G+ S N G+EL DK G + FM+ Sbjct: 85 AAADIPYNVEPNSGALLVKSDDLARARLKLAAAGVAPSDGNVGFELLDKEQGLGTSQFME 144 Query: 128 EITRVRALEG 137 R L G Sbjct: 145 ATRYRRRLGG 154 >gi|166155649|ref|YP_001653904.1| type III secretion system protein, membrane component [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|165931637|emb|CAP07213.1| type III secretion system protein, membrane component [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 325 Score = 112 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 52/195 (26%), Positives = 81/195 (41%), Gaps = 20/195 (10%) Query: 34 MLFMAARFFVNSPHYDNLYV-KLEVSDVNRISVALSEANIDFRI-----SDNGSS----- 82 + F+ A FF ++ ++ L D N I V L + + S G S Sbjct: 10 LFFILALFFCSACDSRSMITHGLSGRDANEIVVLLVSKGVAAQKVPQAASSTGGSGEQLW 69 Query: 83 -ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 ISVP++ + +A L GLP S +LF K + ++I L ++A Sbjct: 70 DISVPAAQITEALAILNQAGLPRMKGTSLLDLFSK-QGLVPSEMQEKIRYQEGLSEQMAT 128 Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEAIRHLVAAA 198 TI+ + GIV A V I + TASV I+ ++ I+ LVA+A Sbjct: 129 TIRKMDGIVDASVQISFSPE----EDQRPLTASVYIKHRGVLDNPNSIMVSKIKRLVASA 184 Query: 199 VPNLDMGDVTVLDST 213 VP L +V+V+ Sbjct: 185 VPGLYPENVSVVSDR 199 >gi|255311377|ref|ZP_05353947.1| type III secretion system protein, membrane component [Chlamydia trachomatis 6276] gi|255317678|ref|ZP_05358924.1| type III secretion system protein, membrane component [Chlamydia trachomatis 6276s] Length = 326 Score = 112 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 52/195 (26%), Positives = 81/195 (41%), Gaps = 19/195 (9%) Query: 34 MLFMAARFFVNSPHYDNLYV-KLEVSDVNRISVALSEANIDFRI-----SDNGSS----- 82 + F+ A FF ++ ++ L D N I V L + + S G S Sbjct: 10 LFFILALFFCSACDSRSMITHGLSGRDANEIVVLLVSKGVAAQKVPQAASSTGGSGEQLW 69 Query: 83 -ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 ISVP++ + +A L GLP S +LF K + ++I L ++A Sbjct: 70 DISVPAAQITEALAILNQAGLPRMKGTSLLDLFAK-QGLVPSEMQEKIRYQEGLSEQMAT 128 Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEAIRHLVAAA 198 TI+ + GIV A V I + TASV I+ ++ I+ LVA+A Sbjct: 129 TIRKMDGIVDASVQISFSPEE---EDQRPLTASVYIKHRGVLDNPNSIMVSKIKRLVASA 185 Query: 199 VPNLDMGDVTVLDST 213 VP L +V+V+ Sbjct: 186 VPGLCPENVSVVSDR 200 >gi|83647792|ref|YP_436227.1| type III secretory pathway, lipoprotein EscJ [Hahella chejuensis KCTC 2396] gi|83635835|gb|ABC31802.1| Type III secretory pathway, lipoprotein EscJ [Hahella chejuensis KCTC 2396] Length = 251 Score = 112 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 8/168 (4%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRIS------DNGSSISVPSSMVGKARIHLAAQGL 102 LY L + N + L + + D + +P V +A L QG Sbjct: 23 TELYSGLSQQEGNEMYAILRSTGFNVEMEVLGAGKDQNVRLKLPEQQVARAISVLQRQGY 82 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162 P + E+F K + ++ + A+ E++ T+ +I G++ ARVH+VM + Sbjct: 83 PKQHFATMGEIFAKD-GLISSPTEEKARFIYAISQELSHTLSNIDGVLVARVHVVMQEGD 141 Query: 163 SFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209 F K TASV I+ + + ++ I+ LV+ ++ LD V+V Sbjct: 142 KFDKNPKPSTASVFIKYVEDAPIETLTPKIKALVSNSILGLDYDQVSV 189 >gi|153003620|ref|YP_001377945.1| secretory protein YscJ/FliF family protein [Anaeromyxobacter sp. Fw109-5] gi|152027193|gb|ABS24961.1| secretory protein YscJ/FliF family protein [Anaeromyxobacter sp. Fw109-5] Length = 239 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 46/171 (26%), Positives = 76/171 (44%), Gaps = 10/171 (5%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRI-----SDNGSSISVPSSMVGKARIHLAAQGLP 103 + L L+ + N + VAL E + SD ++V + +A LA + LP Sbjct: 20 EELLHGLDEAQANEVLVALDEGGLPATKRREEGSDGQWMVAVGAHDAARAHRVLAERELP 79 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 + E+F K S T + + AL GE++R+++SI G+V ARVH+ +P Sbjct: 80 RARPPGFGEVFGK-GSMVPTPTEEHALYLHALAGELSRSVESIDGVVEARVHLGLPQPDP 138 Query: 164 FRKIGARPTASVMIRAINPSVYKSAEA----IRHLVAAAVPNLDMGDVTVL 210 R ++ P+ + A IR LVA A L+ G ++V+ Sbjct: 139 LRPGDVPAPRGAVLVKCRPAACDAVRALEAGIRALVAGAAGGLEPGAISVV 189 >gi|304311662|ref|YP_003811260.1| Type III secretion pathway protein [gamma proteobacterium HdN1] gi|301797395|emb|CBL45615.1| Type III secretion pathway protein [gamma proteobacterium HdN1] Length = 244 Score = 111 bits (277), Expect = 4e-22, Method: Composition-based stats. Identities = 42/182 (23%), Positives = 78/182 (42%), Gaps = 7/182 (3%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSM 89 + + +++ LY +LE VN + L I ++S +G + + VP + Sbjct: 8 VALVVCFLLLSACGGSELYSELEEHQVNEMQALLINVGIPAEKKLSSDGKAWRLLVPKAY 67 Query: 90 VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149 + ++ L+ GLP + S ++F K F + + V A+ E++ TI + G+ Sbjct: 68 IPESMTLLSEHGLPRQTLPSIADVF-KKEGFVSSPVEEHARYVYAISQELSNTIMQLDGV 126 Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNL-DMGDV 207 +ARVH +P + K + SV+I E I+ + + L D+ V Sbjct: 127 ASARVHAALPARAALEKKQQSASVSVVIIEKPGFDLSKFETDIKAIATDGIEGLSDINRV 186 Query: 208 TV 209 TV Sbjct: 187 TV 188 >gi|283782092|ref|YP_003372847.1| Flagellar biosynthesis/type III secretory pathway lipoprotein-like protein [Pirellula staleyi DSM 6068] gi|283440545|gb|ADB18987.1| Flagellar biosynthesis/type III secretory pathway lipoprotein-like protein [Pirellula staleyi DSM 6068] Length = 553 Score = 110 bits (276), Expect = 5e-22, Method: Composition-based stats. Identities = 87/576 (15%), Positives = 172/576 (29%), Gaps = 63/576 (10%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 QL + +S + R +L V++V I ++ + Y +++ I Sbjct: 10 QLTELVRSMSPGTRLATGLLLIVVVVSIG-YLFQYQVTSGDEYLLDGRPFSGAELTNIES 68 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG-LPSSSSNSGYELFDKVNSFGLTS 124 A ++A + + + +G+ I +P LA LP+ E F + Sbjct: 69 AFAQAGLG-KSTVDGNRIRIPRGQKEIYLAALAENDALPADFYRYLDEAAASDTPFTSSR 127 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 M+ + + A + E+A I + G+ AA V G + + TA V ++ ++ Sbjct: 128 SME-MKKWNAKQKELALIISRMKGVEAATVQYDEELKGGLTRSKQK-TAMVAVQTAGGAL 185 Query: 185 YK-SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS-----LSIVQAIQ 238 ++IR+++A+A LD D+TV D T L + + Q + Sbjct: 186 EDAQLKSIRNVIASAYAGLDRRDITVTDMTSGLSYGGGSSTDGSMSEEDSIYAAHKQKYE 245 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV-YDPDSKVERSIRLSKDAQRS 297 + + I LA V EL+ + + + D S +K+ + Sbjct: 246 RDWQRKIADQLAMI---PGVIVGVNVELSPELSHQSQTIKLDAKPVAVESNEFTKEQSST 302 Query: 298 ETSQPESAVTVEQNMP--HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 S + + V+ + ++ + E N + Sbjct: 303 SPSPAGRPGAIPNGVGNQPVAVNNTSSANESQTSESRSEVRN-VPGHEQTVMKRAPLVPT 361 Query: 356 RLSIAVVVNKGRLT----EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 ++ ++ + T E + A AEI KI + G T+ ++ Sbjct: 362 VVTASIDIPASYFTRIWRERNPQPAGAPPKQPDAAEIAKIETETKGKVQE-----TVRNL 416 Query: 412 --DFLE-------------NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456 + L S + S + + F + L L + + Sbjct: 417 LPPVSQGTNPYPHIAVATYTDLPGSPMPEASIAETATAWFGSNWQTLAVLGVGMFALVML 476 Query: 457 LHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ 516 R L K + + N Sbjct: 477 RSMTRPLPLPPAPANASSSLKIADTDADDDEEAASPASALRRRLAGGPNI---------- 526 Query: 517 SRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 L M++ + + A ILR W Sbjct: 527 -----------KDELRDMVKEDPDAAANILRNWIGD 551 >gi|294141012|ref|YP_003556990.1| type III secretion system apparatus lipoprotein [Shewanella violacea DSS12] gi|293327481|dbj|BAJ02212.1| type III secretion system apparatus lipoprotein [Shewanella violacea DSS12] Length = 243 Score = 110 bits (276), Expect = 5e-22, Method: Composition-based stats. Identities = 38/195 (19%), Positives = 78/195 (40%), Gaps = 6/195 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDF--RISDNGSSIS--VPSSMVGKARIHLAAQGLPS 104 +L+ L D N++ L +ID + D +I+ + A L G P Sbjct: 20 VDLFRDLSQDDANQMVALLMLHHIDAASELDDKSGTITLKIDKDQFINAVELLRQNGFPK 79 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 +S +LF + +E E ++ RT+ ++ G+++ARV I ++ Sbjct: 80 PHYSSIEDLFPSGQ-LVTSPTQEEAKMNYLKEQQLERTLSTMDGVISARVTIAEMELDPN 138 Query: 165 RKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME 223 R+ +ASV I+ + +A+ I+ L+ +V L + +++V Sbjct: 139 RREPTDKSASVFIKYSPQANLSNAKNNIKKLIQNSVTGLSVDNISVYLQESNYRYQPITP 198 Query: 224 RNILGKSLSIVQAIQ 238 + ++ AI+ Sbjct: 199 STSHTGNSGLLSAIE 213 >gi|296162486|ref|ZP_06845277.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia sp. Ch1-1] gi|295887299|gb|EFG67126.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia sp. Ch1-1] Length = 281 Score = 110 bits (275), Expect = 6e-22, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 6/165 (3%) Query: 51 LYVKLEVSDVNRISVALSEANID-FRIS--DNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 L+ L+ NRI ALS I+ ++ D +I+V A +A LP Sbjct: 21 LFEGLDEDQANRIVAALSHHGINGYKERNPDRTWNITVDDEDAVIATELASAYALPRGGH 80 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 + +LF + + + V L E++ T++ + G++ ARVHIV+P+ Sbjct: 81 ANLGDLFSR-QGLISSPEEDRVRYVYGLSQELSETLEKMDGVLLARVHIVLPEKDPMDPA 139 Query: 168 GAR-PTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210 P+ASVM+R + + + IR LVA V L V++ Sbjct: 140 QDTLPSASVMMRYRSDYNLEPMRDRIRALVAGGVEGLTPARVSLT 184 >gi|282891204|ref|ZP_06299707.1| type III secretion lipoprotein SctJ [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498897|gb|EFB41213.1| type III secretion lipoprotein SctJ [Parachlamydia acanthamoebae str. Hall's coccus] Length = 321 Score = 110 bits (274), Expect = 8e-22, Method: Composition-based stats. Identities = 51/209 (24%), Positives = 79/209 (37%), Gaps = 19/209 (9%) Query: 25 LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF------RISD 78 + S ++ + L A + + L+ + N I V LS ID + Sbjct: 6 ILSKLVGTVFLLCMAFLLTSCESRKTIVNGLDEKEANEIVVFLSSKGIDAMKVQSTEGAG 65 Query: 79 NGSS------ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 G S ISV + +A L GLP S +F V + + I Sbjct: 66 GGGSKIVLWDISVSADKATQAMSILNQSGLPRRKPQSLLGIFSNV-GLVPSELQERIRYQ 124 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARP---TASVMIRAINPSVYKS-- 187 L +IA TI+ I G++ A V I P+ G + ASV ++ + Sbjct: 125 AGLAEQIASTIRKIDGVLDAEVQISFPEEDPLNPTGEKKGKIVASVYVKHSGVLDDPNSH 184 Query: 188 -AEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 I+ LVAA+V LD +VTV+ + Sbjct: 185 LVTKIKRLVAASVTGLDYDNVTVIGDRAR 213 >gi|91782699|ref|YP_557905.1| secretory protein YscJ/FliF [Burkholderia xenovorans LB400] gi|91686653|gb|ABE29853.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia xenovorans LB400] Length = 281 Score = 110 bits (274), Expect = 9e-22, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 6/165 (3%) Query: 51 LYVKLEVSDVNRISVALSEANID-FRIS--DNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 L+ L+ NRI ALS I+ ++ D +I+V + A +A LP Sbjct: 21 LFEGLDEDQANRIVAALSHHGINGYKERNPDRTWNITVDDADAVVATELASAYALPRGGH 80 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 + +LF + + + V L E++ T++ + G++ ARVHIV+P+ Sbjct: 81 ANLGDLFSR-QGLISSPEEDRVRYVYGLSQELSETLEKMDGVLLARVHIVLPEKDPMDST 139 Query: 168 GAR-PTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210 P+ASVM+R + + + IR LVA V L V++ Sbjct: 140 QDTLPSASVMMRYRSDYNLEPMRDRIRALVAGGVEGLTPARVSLT 184 >gi|212702675|ref|ZP_03310803.1| hypothetical protein DESPIG_00703 [Desulfovibrio piger ATCC 29098] gi|212673947|gb|EEB34430.1| hypothetical protein DESPIG_00703 [Desulfovibrio piger ATCC 29098] Length = 260 Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats. Identities = 44/166 (26%), Positives = 71/166 (42%), Gaps = 5/166 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGLPSS 105 +Y L N++ L I+ NG ++ V + +A L LP Sbjct: 17 VEMYSGLSEDQANQMLSTLLRRGIEAEKQAAGKNGYTLLVDDDQLVRALQVLKENSLPRE 76 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 + + E+F TS + AL E+A T+ I G++ ARVH+V+ Sbjct: 77 AFKNLGEVFAGDGMISSTS-EVQARMSYALSQELADTLSRIDGVLTARVHVVLGVNDKVN 135 Query: 166 KIGARPTASVMIR-AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 I P+A+V +R ++ V IR LVA AV +L +V+V+ Sbjct: 136 NITIAPSAAVFLRHTLDSPVVNLVPEIRELVAGAVASLKYDNVSVM 181 >gi|227114184|ref|ZP_03827840.1| type III secretion protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 255 Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 4/156 (2%) Query: 51 LYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108 L L +D N L I R+ G ++ + + + +A L A GLP S Sbjct: 24 LNRGLSENDANEAISMLGRYQIGAEKRVDKTGVTLVIDAKNMERAVNILNAAGLPKQSRT 83 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 + E+F K + T + + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 84 NLGEVFQK-SGVISTPLEERARYIYALSQEVEATLAQIDGVLVARVHVVLPERIAPGEPV 142 Query: 169 ARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLD 203 +A+V I+ E IR +VA+++P L Sbjct: 143 QPASAAVFIKYRAELEPDGMEQRIRRMVASSIPGLS 178 >gi|325526929|gb|EGD04393.1| flagellar MS-ring protein [Burkholderia sp. TJI49] Length = 185 Score = 108 bits (271), Expect = 2e-21, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 65/199 (32%), Gaps = 15/199 (7%) Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 +RLS+AVVVN + + G Q + LA+I ++V A G + +RGD++ + + F Sbjct: 1 KRLSVAVVVNSQPVADAKGHVTMQPLPPAKLAQIEQLVKDAMGYDEKRGDSVNVVNSAFS 60 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 N+ DI+ + L A+RR + + Sbjct: 61 TVPDPNADLPWWRQPDIVEMAKEAAKWLGIAAAAAALYFMFVRPAMRRAFPPPEPAAPAL 120 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 A D+ L + + RNL + Sbjct: 121 AAPEDPVALDGLPAPEQAEA--DDPMLLGFENEKHRYERNLDYA-------------RTI 165 Query: 535 IEINEERFAKILRKWARSE 553 + + A +++ W E Sbjct: 166 ARQDPKIVATVVKNWVSDE 184 >gi|227328506|ref|ZP_03832530.1| type III secretion protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 255 Score = 107 bits (268), Expect = 4e-21, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 4/156 (2%) Query: 51 LYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108 L L +D N L I R+ G ++ + + + +A L A GLP S Sbjct: 24 LNRGLSENDANEAISMLGRYQIGAEKRVDKTGVTLVIDAKNMERAVNILNAAGLPKQSRT 83 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 + E+F K + T + + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 84 NLGEVFQK-SGVISTPLEERARYIYALSQEVEATLAQIDGVLVARVHVVLPERIAPGEPV 142 Query: 169 ARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLD 203 +A+V I+ E IR +VA+++P L Sbjct: 143 QPASAAVFIKYRAELEPDGMEQRIRRMVASSIPGLS 178 >gi|253688582|ref|YP_003017772.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755160|gb|ACT13236.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 255 Score = 107 bits (268), Expect = 4e-21, Method: Composition-based stats. Identities = 41/173 (23%), Positives = 72/173 (41%), Gaps = 4/173 (2%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVG 91 + + L L +D N L I R+ G ++ + + + Sbjct: 7 VFLLLIGLLAGCGEPIELNRGLSENDANEAISMLGRYQIGAEKRVDKTGVTLVIDAKNME 66 Query: 92 KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVA 151 +A L A GLP S + E+F K + T + + AL E+ T+ I G++ Sbjct: 67 RAVNILNAAGLPKQSRTNLGEVFQK-SGVISTPLEERARYIYALSQEVEATLAQIDGVLV 125 Query: 152 ARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLD 203 ARVH+V+P+ + + +A+V I+ E IR +VA+++P L Sbjct: 126 ARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGMEPRIRRMVASSIPGLS 178 >gi|194350719|gb|ACF53790.1| HrcJ [Pantoea stewartii] Length = 146 Score = 107 bits (267), Expect = 5e-21, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 4/147 (2%) Query: 59 DVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 D N ++ L +I + +G ++ V ++ + +A L A GLP + + E+F K Sbjct: 1 DANEVAAELGRYHIKAEKHTNKDGITVMVDTADLNRAVHILDAAGLPRPTRTNLGEVFQK 60 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 N T + + AL E+ T+ I G++ ARVH+V+P+ + + +A+V Sbjct: 61 -NGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERVAPGEPILPASAAVF 119 Query: 177 IRAINPSVYKSAE-AIRHLVAAAVPNL 202 I+ E IR +VA+++P L Sbjct: 120 IKYRPELDPDVIEPRIRQMVASSLPGL 146 >gi|194350697|gb|ACF53779.1| HrcJ [Erwinia psidii] Length = 146 Score = 107 bits (266), Expect = 6e-21, Method: Composition-based stats. Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 4/147 (2%) Query: 59 DVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 D N ++ L +I R S +G ++ V ++ + +A L A GLP + + E+F K Sbjct: 1 DANEVAAELGRYHIQADKRTSKDGITVLVDAAELNRAVHILDAAGLPRPARTNLGEVFQK 60 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 N T + + AL E+ T+ I G++ ARVH+V+P+ + + +A+V Sbjct: 61 -NGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAPGEPVQPASAAVF 119 Query: 177 IRAINPSVYKSAE-AIRHLVAAAVPNL 202 I+ E IR +VA+++P L Sbjct: 120 IKYRPDLDPDVIEPRIRQMVASSLPGL 146 >gi|54124981|gb|AAV30249.1| YscJ [Aeromonas hydrophila] Length = 245 Score = 107 bits (266), Expect = 7e-21, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 75/195 (38%), Gaps = 15/195 (7%) Query: 21 RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80 + +L V+ ++L LY + + N + L I + Sbjct: 2 KRSMLMGVVFTSLLLGGCK---------VELYTGVSQKEGNEMLALLRTEGISSDKQPDK 52 Query: 81 SS---ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137 + V S V +A L +G P S ++ ++F K + + A Sbjct: 53 DGHVKLLVEESDVAQAIEALKRKGYPRESFSTLQDVFPKD-GLISSPTEERARLNYAKAQ 111 Query: 138 EIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLV 195 EI+ T+ I G++ ARVH+V+P+ K + +ASV I+ + I+ LV Sbjct: 112 EISHTLSEIDGVLVARVHVVLPEGNEGISKKPSPASASVFIKHAADIQLDTYIPQIKQLV 171 Query: 196 AAAVPNLDMGDVTVL 210 ++ L ++V+ Sbjct: 172 NNSIEGLAYDRISVV 186 >gi|83645997|ref|YP_434432.1| type III secretory pathway, lipoprotein EscJ [Hahella chejuensis KCTC 2396] gi|83634040|gb|ABC30007.1| Type III secretory pathway, lipoprotein EscJ [Hahella chejuensis KCTC 2396] Length = 265 Score = 107 bits (266), Expect = 7e-21, Method: Composition-based stats. Identities = 41/181 (22%), Positives = 75/181 (41%), Gaps = 6/181 (3%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN----GSSISVPSSM 89 +L F+ S + LY L + + L E ++ ++SV + Sbjct: 16 LLLGFLFVFILSGCKETLYSDLTEKEGAEMLSILLEEGLEAEKVPGQKGQTVALSVERAQ 75 Query: 90 VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149 + +A L ++G P S ELF K + + + L EIA T+ + G+ Sbjct: 76 LSQAIRLLKSRGYPRDDFTSVGELFKKD-GLISSPLEERARYIYGLSQEIAATLSQLDGV 134 Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVT 208 + ARVH+VMP++ + + +ASV I+ + I+ LV ++ L ++ Sbjct: 135 ITARVHVVMPEVENKKAPLKVSSASVFIKYESTVNLDDFVPQIKLLVNNSIEGLSYDNIA 194 Query: 209 V 209 V Sbjct: 195 V 195 >gi|1781392|gb|AAC44781.1| PscJ [Pseudomonas aeruginosa] Length = 248 Score = 107 bits (266), Expect = 7e-21, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 69/167 (41%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDF--RISDNGSS-ISVPSSMVGKARIHLAAQGLPSS 105 LY + + N + L + + +G+ + V S + +A L +G P Sbjct: 25 VELYTGISQKEGNEMLALLRSEGVSADKQADKDGTVRLLVEESDIAEAVEVLKRKGYPRE 84 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMGSF 164 + ++ ++F K + + A EI+ T+ I G++ ARVH+V+P + Sbjct: 85 NFSTLKDVFPKD-GLISSPIEERARLNYAKAQEISHTLSEIDGVLVARVHVVLPEERDGL 143 Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 + + +ASV I+ + I+ LV + L ++V+ Sbjct: 144 GRKSSPASASVFIKHAADVQLDAYVPQIKQLVNNGIEGLSYDRISVV 190 >gi|37527647|ref|NP_930991.1| Type III secretion component protein SctJ [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787082|emb|CAE16157.1| Type III secretion component protein SctJ [Photorhabdus luminescens subsp. laumondii TTO1] Length = 245 Score = 106 bits (265), Expect = 9e-21, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 6/165 (3%) Query: 51 LYVKLEVSDVNRISVALSEANI--DFRISDNGSS-ISVPSSMVGKARIHLAAQGLPSSSS 107 LY + + N + L EA I D + +G+ + V S V +A L +G P + Sbjct: 23 LYTDVSQKEGNEMLALLREAGISSDKQPDKDGNIKLLVEESDVAQAVEVLKRKGYPRENF 82 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS-FRK 166 +S ++F K + + A EIART+ I G++ ARVH+V+P+ K Sbjct: 83 SSLQDVFPKD-GLISSPIEERARLNFAKAQEIARTLSEIDGVLVARVHVVLPEEQDRLGK 141 Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 + ++SV I+ + I+ LV ++ L ++V+ Sbjct: 142 KLSPASSSVFIKHAADVQLDTYIPQIKQLVNNSIEGLSYDRISVV 186 >gi|27550044|gb|AAO18027.1| LscJ [Photorhabdus luminescens] Length = 245 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 6/165 (3%) Query: 51 LYVKLEVSDVNRISVALSEANI--DFRISDNGSS-ISVPSSMVGKARIHLAAQGLPSSSS 107 LY + + N + L EA I D + +G+ + V S V +A L +G P + Sbjct: 23 LYTGVSQKEGNEMLALLREAGISSDKQPDKDGNIKLLVEESDVAQAVEVLKRKGYPRENF 82 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS-FRK 166 +S ++F K + + A EIART+ I G++ ARVH+V+P+ K Sbjct: 83 SSLQDVFPKD-GLISSPIEERARLNFAKAQEIARTLSEIDGVLVARVHVVLPEEQDKLGK 141 Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 + ++SV I+ + I+ LV ++ L ++V+ Sbjct: 142 KLSPASSSVFIKHAADVQLDTYIPQIKQLVNNSIEGLSYDRISVV 186 >gi|50121023|ref|YP_050190.1| type III secretion system protein [Pectobacterium atrosepticum SCRI1043] gi|42560409|gb|AAS20369.1| HrcJ [Pectobacterium atrosepticum] gi|49611549|emb|CAG74997.1| type III secretion protein [Pectobacterium atrosepticum SCRI1043] Length = 255 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 4/156 (2%) Query: 51 LYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108 L L +D N L I R+ G ++ + + + +A L A GLP S Sbjct: 24 LNRGLSENDANEAISMLGRYQIGAEKRVEKTGVTLVIDAKNMERAVNILNAAGLPKQSRT 83 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 + E+F K + T + + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 84 NLGEVFQK-SGVISTPLEERARYIYALSQEVEATLAQIDGVMVARVHVVLPERIAPGEPV 142 Query: 169 ARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLD 203 +A+V I+ E IR +VA+++P L Sbjct: 143 QPASAAVFIKYRAELEPDGMEPRIRRMVASSIPGLS 178 >gi|76574834|gb|ABA47308.1| HrcJ [Pseudomonas cichorii] Length = 263 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 44/155 (28%), Positives = 76/155 (49%), Gaps = 4/155 (2%) Query: 51 LYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108 L+ L D N + L+ NID R+ G ++ V + + +A L A GLP S + Sbjct: 27 LHRDLTEQDANEVLAELAGKNIDAQKRLDKGGVAVLVSTQDISRAVRVLEAVGLPRRSRS 86 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 + E+F K + + + AL E+ +T+ I G+V ARVH+V+P+ + + Sbjct: 87 TLGEVFRKEGVI-SSPMEERARYIYALSQELEQTLSQIDGVVVARVHVVLPERIAPGEPV 145 Query: 169 ARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNL 202 +A+V I+ N S IR +VA+++P + Sbjct: 146 QPASAAVFIKYRNDLEPDSILPRIRRMVASSIPGM 180 >gi|253988512|ref|YP_003039868.1| type III secretion component protein sctj [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211637906|emb|CAR66535.1| type iii secretion component protein sctj [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779962|emb|CAQ83123.1| type iii secretion component protein sctj [Photorhabdus asymbiotica] Length = 245 Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats. Identities = 46/188 (24%), Positives = 82/188 (43%), Gaps = 12/188 (6%) Query: 28 VILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI--DFRISDNGSS-IS 84 +I V + + M A + LY + + N + L EA I D + +G+ + Sbjct: 6 IICVLLAVLMLAGCKI------ELYTGVSQKEGNEMLALLREAGISSDKQPDKDGNIKLL 59 Query: 85 VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144 V S V +A L ++G P + +S ++F K + + A EIART+ Sbjct: 60 VEESDVAQAVEVLKSKGYPRENFSSLQDVFPKD-GLISSPVEERARLNFAKAQEIARTLS 118 Query: 145 SISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNL 202 I G++ ARVH+V+P+ K ++SV I+ + I+ LV ++ L Sbjct: 119 EIDGVLVARVHVVLPEEQDRLGKKLLPASSSVFIKHAADVQLDTYIPQIKQLVNNSIEGL 178 Query: 203 DMGDVTVL 210 ++V+ Sbjct: 179 SYDRISVV 186 >gi|313110409|ref|ZP_07796295.1| pscJ type III export protein [Pseudomonas aeruginosa 39016] gi|310882797|gb|EFQ41391.1| pscJ type III export protein [Pseudomonas aeruginosa 39016] Length = 244 Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 69/167 (41%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDF--RISDNGSS-ISVPSSMVGKARIHLAAQGLPSS 105 LY + + N + L + + +G+ + V S + +A L +G P Sbjct: 21 VELYTGISQKEGNEMLALLRSEGVSADKQADKDGTVRLLVEESDIAEAVEVLKRKGYPRE 80 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMGSF 164 + ++ ++F K + + A EI+ T+ I G++ ARVH+V+P + Sbjct: 81 NFSTLKDVFPKD-GLISSPIEERARLNYAKAQEISHTLSEIDGVLVARVHVVLPEERDGL 139 Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 + + +ASV I+ + I+ LV + L ++V+ Sbjct: 140 GRKSSPASASVFIKHAADVQLDAYVPQIKQLVNNGIEGLSYDRISVV 186 >gi|194350699|gb|ACF53780.1| HrcJ [Erwinia pyrifoliae] Length = 146 Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 4/147 (2%) Query: 59 DVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 D N ++ L +I + +G ++ V ++ + +A L A GLP + + E+F K Sbjct: 1 DANEVAAELGRYHIQAEKLANKDGITVMVDAAELNRAVHILDAAGLPRPARTNLGEVFQK 60 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 N T + + AL E+ T+ I G++ ARVH+V+P+ + + +A+V Sbjct: 61 -NGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAPGEPVQPASAAVF 119 Query: 177 IRAINPSVYKSAE-AIRHLVAAAVPNL 202 I+ E IR +VA+++P L Sbjct: 120 IKYRPDLDPDIIEPRIRRMVASSLPGL 146 >gi|167030900|gb|ABZ05768.1| HrcJ [Pectobacterium carotovorum subsp. carotovorum] Length = 212 Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 4/156 (2%) Query: 51 LYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108 L L +D N L I R+ G ++ + + + +A L A GLP S Sbjct: 24 LNRGLSENDANEAISMLGRYQIGAEKRMDKTGVTLVIDAKNMERAVNILNAAGLPKQSRT 83 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 + E+F K + T + + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 84 NLGEVFQK-SGVISTPLEERARYIYALSQEVEATLAQIDGVLVARVHVVLPERIAPGEPV 142 Query: 169 ARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLD 203 +A+V I+ E IR +VA+++P L Sbjct: 143 QPASAAVFIKYRAELEPDGMEQRIRRMVASSIPGLS 178 >gi|107101154|ref|ZP_01365072.1| hypothetical protein PaerPA_01002186 [Pseudomonas aeruginosa PACS2] gi|296389892|ref|ZP_06879367.1| type III export protein PscJ [Pseudomonas aeruginosa PAb1] Length = 238 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 69/167 (41%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDF--RISDNGSS-ISVPSSMVGKARIHLAAQGLPSS 105 LY + + N + L + + +G+ + V S + +A L +G P Sbjct: 15 VELYTGISQKEGNEMLALLRSEGVSADKQADKDGTVRLLVEESDIAEAVEVLKRKGYPRE 74 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMGSF 164 + ++ ++F K + + A EI+ T+ I G++ ARVH+V+P + Sbjct: 75 NFSTLKDVFPKD-GLISSPIEERARLNYAKAQEISHTLSEIDGVLVARVHVVLPEERDGL 133 Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 + + +ASV I+ + I+ LV + L ++V+ Sbjct: 134 GRKSSPASASVFIKHAADVQLDAYVPQIKQLVNNGIEGLSYDRISVV 180 >gi|84785890|gb|ABC62084.1| secretion and cellular translocation protein J [Chlamydophila psittaci] Length = 330 Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 50/196 (25%), Positives = 75/196 (38%), Gaps = 21/196 (10%) Query: 35 LFMAARFF--VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI------SDNGSS---- 82 LF F + + L + N I V L + + S G+S Sbjct: 10 LFFIMTLFCCTSCNSRSLIVHGLPGREANEIVVLLVSKGVAAQKQPQAAASTGGASSXQL 69 Query: 83 --ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140 ISVP+ + +A L GLP S +LF K + ++I L ++A Sbjct: 70 WDISVPAEQITEALAILNQAGLPRMKGTSLLDLFAK-QGLVPSEMQEKIRYQEGLSEQMA 128 Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS---AEAIRHLVAA 197 TI+ + GIV A V I + TASV I+ + I+ LVA+ Sbjct: 129 STIRKMDGIVDASVQISFTTE---AEDNLPLTASVYIKHRGVLDNPNSIMVSKIKRLVAS 185 Query: 198 AVPNLDMGDVTVLDST 213 AVP L +V+V+ Sbjct: 186 AVPGLSTENVSVISDR 201 >gi|15596920|ref|NP_250414.1| type III export protein PscJ [Pseudomonas aeruginosa PAO1] gi|116049673|ref|YP_791522.1| pscJ type III export protein [Pseudomonas aeruginosa UCBPP-PA14] gi|254240067|ref|ZP_04933389.1| type III export protein PscJ [Pseudomonas aeruginosa 2192] gi|9947698|gb|AAG05112.1|AE004598_11 type III export protein PscJ [Pseudomonas aeruginosa PAO1] gi|115584894|gb|ABJ10909.1| pscJ type III export protein [Pseudomonas aeruginosa UCBPP-PA14] gi|126193445|gb|EAZ57508.1| type III export protein PscJ [Pseudomonas aeruginosa 2192] Length = 248 Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 69/167 (41%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDF--RISDNGSS-ISVPSSMVGKARIHLAAQGLPSS 105 LY + + N + L + + +G+ + V S + +A L +G P Sbjct: 25 VELYTGISQKEGNEMLALLRSEGVSADKQADKDGTVRLLVEESDIAEAVEVLKRKGYPRE 84 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMGSF 164 + ++ ++F K + + A EI+ T+ I G++ ARVH+V+P + Sbjct: 85 NFSTLKDVFPKD-GLISSPIEERARLNYAKAQEISHTLSEIDGVLVARVHVVLPEERDGL 143 Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 + + +ASV I+ + I+ LV + L ++V+ Sbjct: 144 GRKSSPASASVFIKHAADVQLDAYVPQIKQLVNNGIEGLSYDRISVV 190 >gi|46445839|ref|YP_007204.1| putative type III secretion protein SctJ [Candidatus Protochlamydia amoebophila UWE25] gi|46399480|emb|CAF22929.1| putative type III secretion protein SctJ [Candidatus Protochlamydia amoebophila UWE25] Length = 337 Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 48/200 (24%), Positives = 74/200 (37%), Gaps = 17/200 (8%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR----ISDNGSS------ 82 +L + + LE + N I V LS I+ +S+ G Sbjct: 20 FLLITLMGLVTSCESRRVIVNGLEEKEANEILVFLSNKGINANKVQAVSEGGGGAKGVLW 79 Query: 83 -ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 ISV +A L GLP + +F S + ++I L +IA Sbjct: 80 NISVEEGQANEAMALLNQVGLPRRRGQNLLGIF-ANTSLVPSGMQEKIRYQAGLAEQIAS 138 Query: 142 TIQSISGIVAARVHIVMPDMGSFRKI--GARPTASVMIRAINPSVYKSAE---AIRHLVA 196 TI+ I G++ A V I PD + TASV ++ +A I+ LVA Sbjct: 139 TIRKIDGVLDADVQISFPDEDPLNPNAPKQKITASVYVKHNGVLDDPNAHLITRIKRLVA 198 Query: 197 AAVPNLDMGDVTVLDSTGKL 216 ++ LD VTV+ + Sbjct: 199 GSINGLDYDYVTVIGDKARY 218 >gi|34500890|gb|AAQ73918.1| HrcJ [Pectobacterium carotovorum subsp. carotovorum] Length = 255 Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 41/173 (23%), Positives = 72/173 (41%), Gaps = 4/173 (2%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVG 91 + + L L +D N L I R+ G ++ + + + Sbjct: 7 VFLLLIGLVAGCGEPIELNRGLSENDANEAISMLGRYQIGAEKRMDKTGVTLVIDAKNME 66 Query: 92 KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVA 151 +A L A GLP S + E+F K + T + + AL E+ T+ I G++ Sbjct: 67 RAVNILNAAGLPKQSRTNLGEVFQK-SGVISTPLKERARYIYALSQEVEATLAQIDGVLV 125 Query: 152 ARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLD 203 ARVH+V+P+ + + +A+V I+ E IR +VA+++P L Sbjct: 126 ARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGMEQRIRRMVASSIPGLS 178 >gi|218892324|ref|YP_002441191.1| type III export protein PscJ [Pseudomonas aeruginosa LESB58] gi|254234822|ref|ZP_04928145.1| type III export protein PscJ [Pseudomonas aeruginosa C3719] gi|126166753|gb|EAZ52264.1| type III export protein PscJ [Pseudomonas aeruginosa C3719] gi|218772550|emb|CAW28333.1| type III export protein PscJ [Pseudomonas aeruginosa LESB58] Length = 248 Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 69/167 (41%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDF--RISDNGSS-ISVPSSMVGKARIHLAAQGLPSS 105 LY + + N + L + + +G+ + V S + +A L +G P Sbjct: 25 VELYTGISQKEGNEMLALLRSEGVSADKQADKDGTVRLLVEESDIAEAVEVLKRKGYPRE 84 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMGSF 164 + ++ ++F K + + A EI+ T+ I G++ ARVH+V+P + Sbjct: 85 NFSTLKDVFPKD-GLISSPIEERARLNYAKAQEISHTLSEIDGVLVARVHVVLPEERDGL 143 Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 + + +ASV I+ + I+ LV + L ++V+ Sbjct: 144 GRKSSPASASVFIKHAADVQLDAYVPQIKQLVNNGIEGLSYDRISVV 190 >gi|15835462|ref|NP_297221.1| type III secretion protein SctJ [Chlamydia muridarum Nigg] gi|270285642|ref|ZP_06195036.1| type III secretion protein SctJ [Chlamydia muridarum Nigg] gi|270289651|ref|ZP_06195953.1| type III secretion protein SctJ [Chlamydia muridarum Weiss] gi|301337038|ref|ZP_07225240.1| type III secretion protein SctJ [Chlamydia muridarum MopnTet14] gi|7190875|gb|AAF39646.1| type III secretion protein SctJ [Chlamydia muridarum Nigg] Length = 328 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 44/175 (25%), Positives = 68/175 (38%), Gaps = 20/175 (11%) Query: 54 KLEVSDVNRISVALSEANIDFRISDNG------------SSISVPSSMVGKARIHLAAQG 101 L + N I V L + + ISVP++ + +A L G Sbjct: 31 GLTGREANEIVVLLVSKGVSAQKVPQVAGSSGGGSSEQLWDISVPAAQITEALAILNQAG 90 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S +LF K + ++I L ++A TI+ + GIV A V I Sbjct: 91 LPRMKGTSLLDLFAK-QGLVPSEMQEKIRYQEGLSEQMATTIRKMDGIVDASVQISFSPE 149 Query: 162 GSFRKIGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDST 213 + TASV I+ ++ I+ LVA+AVP L +V+V+ Sbjct: 150 ----EDQLPLTASVYIKHRGVLDNPNSIMVSKIKRLVASAVPGLCPENVSVVSDR 200 >gi|329943273|ref|ZP_08292047.1| hypothetical protein G5Q_0963 [Chlamydophila psittaci Cal10] gi|332287851|ref|YP_004422752.1| putative type III secretion system protein [Chlamydophila psittaci 6BC] gi|313848423|emb|CBY17427.1| putative type III export protein [Chlamydophila psittaci RD1] gi|325506893|gb|ADZ18531.1| putative type III secretion system protein [Chlamydophila psittaci 6BC] gi|328814820|gb|EGF84810.1| hypothetical protein G5Q_0963 [Chlamydophila psittaci Cal10] gi|328915113|gb|AEB55946.1| type III secretion protein SctJ [Chlamydophila psittaci 6BC] Length = 330 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 50/196 (25%), Positives = 76/196 (38%), Gaps = 21/196 (10%) Query: 35 LFMAARFF--VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI------SDNGSS---- 82 LF F + + L + N I V L + + S G+S Sbjct: 10 LFFIMTLFCCTSCNSRSLIVHGLPGREANEIVVLLVSKGVAAQKQPQAAASTGGASSEQL 69 Query: 83 --ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140 ISVP+ + +A L GLP S +LF K + ++I L ++A Sbjct: 70 WDISVPAEQITEALAILNQAGLPRMKGTSLLDLFAK-QGLVPSEMQEKIRYQEGLSEQMA 128 Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEAIRHLVAA 197 TI+ + GIV A V I + TASV I+ ++ I+ LVA+ Sbjct: 129 STIRKMDGIVDASVQISFTTE---AEDNLPLTASVYIKHRGVLDNPNSIMVSKIKRLVAS 185 Query: 198 AVPNLDMGDVTVLDST 213 AVP L +V+V+ Sbjct: 186 AVPGLSTENVSVISDR 201 >gi|269302618|gb|ACZ32718.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Chlamydophila pneumoniae LPCoLN] Length = 335 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 44/175 (25%), Positives = 67/175 (38%), Gaps = 19/175 (10%) Query: 54 KLEVSDVNRISVALSEANIDFRISDNG------------SSISVPSSMVGKARIHLAAQG 101 L D N I V L + + I+VPS+ + +A L G Sbjct: 31 GLPGRDANEIVVLLVSKGVAAQKLPQAAAATAGAATEQMWDIAVPSAQITEALAILNQAG 90 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S +LF K + ++I L ++A TI+ + GIV A V I Sbjct: 91 LPRMKGTSLLDLFAK-QGLVPSELQEKIRYQEGLSEQMASTIRKMDGIVDASVQISFTTE 149 Query: 162 GSFRKIGARPTASVMIRAINPSVYKS---AEAIRHLVAAAVPNLDMGDVTVLDST 213 + TASV I+ + I+ L+A+AVP L +V+V+ Sbjct: 150 N---EDNLPLTASVYIKHRGVLDNPNSIMVSKIKRLIASAVPGLVPENVSVVSDR 201 >gi|145301433|ref|YP_001144272.1| AscJ protein [Aeromonas salmonicida subsp. salmonicida A449] gi|66947987|emb|CAE83124.1| AscJ protein [Aeromonas salmonicida subsp. salmonicida] gi|142856315|gb|ABO92524.1| AscJ protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 242 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 67/167 (40%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGLPSS 105 LY + + N + L I + + V S V +A L +G P Sbjct: 17 VELYTGVTQKEGNEMLALLQTEGIASDKQPDKDGRIKLLVEESDVAQAIETLKRKGYPKE 76 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD-MGSF 164 S ++ ++F K + + A EI+ T+ I G++ ARVH+V+P+ Sbjct: 77 SFSTLQDVFPKD-GLISSPTEERARLTYAKAQEISNTLSEIDGVLVARVHVVLPEGNEGI 135 Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 K + +ASV I+ + I+ LV ++ L ++V+ Sbjct: 136 SKKPSPASASVFIKHAADIQLDTYIPQIKQLVNNSIEGLAYDRISVV 182 >gi|145284368|gb|ABP51949.1| AscJ [Aeromonas veronii bv. sobria] Length = 246 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 67/167 (40%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGLPSS 105 LY + + N + L I + + V S V +A L +G P Sbjct: 21 VELYTGVTQKEGNEMLALLQTEGIASDKQPDKDGRIKLLVEESDVAQAIETLKRKGYPKE 80 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD-MGSF 164 S ++ ++F K + + A EI+ T+ I G++ ARVH+V+P+ Sbjct: 81 SFSTLQDVFPKD-GLISSPTEERARLTYAKAQEISNTLSEIDGVLVARVHVVLPEGNEGI 139 Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 K + +ASV I+ + I+ LV ++ L ++V+ Sbjct: 140 SKKPSPASASVFIKHAADIQLDTYIPQIKQLVNNSIEGLAYDRISVV 186 >gi|118592619|ref|ZP_01550009.1| Type III secretion component protein SctJ [Stappia aggregata IAM 12614] gi|118434670|gb|EAV41321.1| Type III secretion component protein SctJ [Stappia aggregata IAM 12614] Length = 239 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 71/160 (44%), Gaps = 5/160 (3%) Query: 55 LEVSDVNRISVALSEANIDFRIS---DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGY 111 + D N + L I D+G S+ V + + A L+ G P + S Sbjct: 1 MSEQDANGMLSVLMANGISVEKRYDGDDGVSLLVDEADLAPAIGILSENGFPRTERESIG 60 Query: 112 ELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARP 171 +F K + + F + + + AL E++ T+ I G++ ARVH+V+P+ ++ Sbjct: 61 SVFQK-SGIMSSPFEERVRYIHALGEEVSGTLNEIDGVLMARVHVVLPEKPELGEVIVPS 119 Query: 172 TASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210 +A+V I+ IR LV+ ++ ++ VTV+ Sbjct: 120 SAAVFIKHSKNVDLDFITPQIRRLVSNSIQGVEYDSVTVV 159 >gi|182441001|dbj|BAG24126.1| HrcJ [Pseudomonas cichorii] Length = 263 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 4/155 (2%) Query: 51 LYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108 L+ L D N + L+ NID R+ G ++ V + + +A L A GLP S + Sbjct: 27 LHRDLTEQDANEVLAELAGKNIDAQKRLDKGGVAVLVSTQDISRAVKVLEAVGLPRRSRS 86 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 + E+F K + + + AL E+ +T+ I G+V ARVH+V+P+ + + Sbjct: 87 TLGEVFRKEGVI-SSPMEERARYIYALSQELEQTLSQIDGVVVARVHVVLPERIAPGEPV 145 Query: 169 ARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNL 202 +A+V I+ S IR +VA+++P + Sbjct: 146 QPASAAVFIKYRPDLEPDSVLPRIRRMVASSIPGM 180 >gi|15618737|ref|NP_225023.1| Yop proteins translocation lipoprotein J [Chlamydophila pneumoniae CWL029] gi|15836361|ref|NP_300885.1| Yop translocation J [Chlamydophila pneumoniae J138] gi|16752212|ref|NP_445580.1| type III secretion protein SctJ [Chlamydophila pneumoniae AR39] gi|33242188|ref|NP_877129.1| secretion protein [Chlamydophila pneumoniae TW-183] gi|4377140|gb|AAD18965.1| Yop proteins translocation lipoprotein J [Chlamydophila pneumoniae CWL029] gi|6672018|dbj|BAA88646.1| Yop translocation J [Chlamydophila pneumoniae] gi|7189957|gb|AAF38818.1| type III secretion protein SctJ [Chlamydophila pneumoniae AR39] gi|8979202|dbj|BAA99036.1| Yop translocation J [Chlamydophila pneumoniae J138] gi|33236699|gb|AAP98786.1| secretion protein [Chlamydophila pneumoniae TW-183] Length = 335 Score = 105 bits (261), Expect = 3e-20, Method: Composition-based stats. Identities = 44/200 (22%), Positives = 72/200 (36%), Gaps = 21/200 (10%) Query: 31 VPIMLFMAARFF--VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG-------- 80 + LF + + L + N I V L + + Sbjct: 6 ISFCLFFLMTLLCCTSCNSRSLIVHGLPGREANEIVVLLVSKGVAAQKLPQAAAATAGAA 65 Query: 81 ----SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136 I+VPS+ + +A L GLP S +LF K + ++I L Sbjct: 66 TEQMWDIAVPSAQITEALAILNQAGLPRMKGTSLLDLFAK-QGLVPSELQEKIRYQEGLS 124 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS---AEAIRH 193 ++A TI+ + G+V A V I + TASV I+ + I+ Sbjct: 125 EQMASTIRKMDGVVDASVQISFTTEN---EDNLPLTASVYIKHRGVLDNPNSIMVSKIKR 181 Query: 194 LVAAAVPNLDMGDVTVLDST 213 L+A+AVP L +V+V+ Sbjct: 182 LIASAVPGLVPENVSVVSDR 201 >gi|167589321|ref|ZP_02381709.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia ubonensis Bu] Length = 264 Score = 105 bits (261), Expect = 3e-20, Method: Composition-based stats. Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 10/170 (5%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDNG--------SSISVPSSMVGKARIHLAAQ 100 LY L +D N++ L +A ID ++ +SV + A L A Sbjct: 34 KELYSGLSEADANQMIAVLGDAGIDASKDNDARDTSDRDAWQVSVADGDLHAALTVLRAN 93 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S ELF K T + + + + +++RT+Q I G+V ARV +V+P+ Sbjct: 94 GLPKPRHASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSRTLQDIEGVVVARVQVVIPE 152 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209 +A+V IR ++ A ++ LVA ++ L +V++ Sbjct: 153 NDPLADKIRPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 202 >gi|194350683|gb|ACF53772.1| HrcJ [Erwinia mallotivora] gi|194350685|gb|ACF53773.1| HrcJ [Erwinia mallotivora] gi|194350693|gb|ACF53777.1| HrcJ [Brenneria lupinicola] Length = 146 Score = 105 bits (261), Expect = 3e-20, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 4/147 (2%) Query: 59 DVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 D N ++ L +I + G ++ V ++ + +A L A GLP + + E+F K Sbjct: 1 DANEVAAELGRYHIQAEKLTNKEGITVLVDAAELNRAVHILDAAGLPRPARTNLGEVFQK 60 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 N T + + AL E+ T+ I G++ ARVH+V+P+ + + +A+V Sbjct: 61 -NGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAPGEPVQPASAAVF 119 Query: 177 IRAINPSVYKSAE-AIRHLVAAAVPNL 202 I+ E IR +VA+++P L Sbjct: 120 IKYRPDLDPDVIEPRIRRMVASSLPGL 146 >gi|325522916|gb|EGD01366.1| type III secretion protein SctJ [Burkholderia sp. TJI49] Length = 263 Score = 105 bits (261), Expect = 3e-20, Method: Composition-based stats. Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 10/170 (5%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDNG--------SSISVPSSMVGKARIHLAAQ 100 LY L D N++ L +A I ++ +SV + A L A Sbjct: 34 KELYSGLSERDANQMVAVLGDAGISASKDNDARDTSDRNAWQVSVADGDMQSALTVLQAN 93 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S S ELF K T + + + + +++RT+Q I G+V ARV +V+P+ Sbjct: 94 GLPKPSYASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSRTLQDIEGVVVARVQVVIPE 152 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209 +A+V IR ++ A ++ LVA ++ L +V++ Sbjct: 153 NDPLADKIKPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 202 >gi|194350695|gb|ACF53778.1| HrcJ [Erwinia psidii] Length = 146 Score = 105 bits (261), Expect = 3e-20, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 4/147 (2%) Query: 59 DVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 D N ++ L +I + G ++ V ++ + +A L A GLP + + E+F K Sbjct: 1 DANEVAAELGRYHIQAEKLTNKEGITVLVDAAELNRAVHILDAAGLPRPARTNLGEVFQK 60 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 T + + AL E+ T+ I G++ ARVH+V+P+ + + +A+V Sbjct: 61 DGVI-STPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAPGEPVQPASAAVF 119 Query: 177 IRAINPSVYKSAE-AIRHLVAAAVPNL 202 I+ E IR +VA+++P L Sbjct: 120 IKYRPDLDPDVIEPRIRRMVASSLPGL 146 >gi|194350691|gb|ACF53776.1| HrcJ [Brenneria lupinicola] Length = 146 Score = 105 bits (261), Expect = 3e-20, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 4/147 (2%) Query: 59 DVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 D N ++ L +I + G ++ V ++ + +A L A GLP + + E+F K Sbjct: 1 DANEVAAELGRYHIQAEKLTNKEGITVLVDAAELNRAVHILDAAGLPRPARTNLGEVFQK 60 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 N T + + AL E+ T+ I G++ ARVH+V+P+ + + +A+V Sbjct: 61 -NGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAPGEPVQPASAAVF 119 Query: 177 IRAINPSVYKSAE-AIRHLVAAAVPNL 202 I+ E IR +VA+++P L Sbjct: 120 IKYRPDLDPDVVEPRIRRMVASSLPGL 146 >gi|89897886|ref|YP_514996.1| type III secretion flagellar biosynthesis M-ring protein [Chlamydophila felis Fe/C-56] gi|89331258|dbj|BAE80851.1| type III secretion flagellar biosynthesis M-ring protein [Chlamydophila felis Fe/C-56] Length = 330 Score = 105 bits (261), Expect = 3e-20, Method: Composition-based stats. Identities = 46/175 (26%), Positives = 71/175 (40%), Gaps = 19/175 (10%) Query: 54 KLEVSDVNRISVALSEANIDFRI------SDNGSS------ISVPSSMVGKARIHLAAQG 101 L + N I V L + + S G S I+VP++ + +A L G Sbjct: 31 GLPGREANEIVVLLVSKGVAAQKQPQAAASTGGGSTEQLWDIAVPAAQITEALAILNQAG 90 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S +LF K + ++I L ++A TI+ + GIV A V I Sbjct: 91 LPRMKGTSLLDLFAK-QGLVPSEMQEKIRYQEGLSEQMASTIRKMDGIVDASVQISFTTE 149 Query: 162 GSFRKIGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDST 213 + TASV I+ ++ I+ LVA+AVP L +V+V+ Sbjct: 150 ---AEENLPLTASVYIKHRGVLDNPNSIMVSKIKRLVASAVPGLSTENVSVISDR 201 >gi|172063766|ref|YP_001811417.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Burkholderia ambifaria MC40-6] gi|171996283|gb|ACB67201.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia ambifaria MC40-6] Length = 295 Score = 104 bits (260), Expect = 4e-20, Method: Composition-based stats. Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 10/170 (5%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDNG--------SSISVPSSMVGKARIHLAAQ 100 LY L D N++ L A I ++ +SV + A L A Sbjct: 34 KELYSGLSERDANQMVAVLGAAGISASKDNDARDTSDRNAWLVSVADGDMQSALTVLQAN 93 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S S ELF K T + + + + +++RT+Q I G+V ARV +V+P+ Sbjct: 94 GLPKPSYASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSRTLQDIEGVVVARVQVVIPE 152 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209 +A+V IR ++ A ++ LVA ++ L +V++ Sbjct: 153 NDPLADKIKPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 202 >gi|115358974|ref|YP_776112.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Burkholderia ambifaria AMMD] gi|115284262|gb|ABI89778.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia ambifaria AMMD] Length = 309 Score = 104 bits (259), Expect = 4e-20, Method: Composition-based stats. Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 10/170 (5%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDNG--------SSISVPSSMVGKARIHLAAQ 100 LY L D N++ L +A I ++ +SV + A L A Sbjct: 48 KELYSGLSERDANQMVAVLGDAGISASKDNDARDTSDRNAWLVSVADGDMQSALTVLQAN 107 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S S ELF K T + + + + +++RT+Q I G+V ARV +V+P+ Sbjct: 108 GLPKPSYASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSRTLQDIEGVVVARVQVVIPE 166 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209 +A+V IR ++ A ++ LVA ++ L +V++ Sbjct: 167 NDPLADKIKPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 216 >gi|297620340|ref|YP_003708477.1| type III secretion lipoprotein SctJ [Waddlia chondrophila WSU 86-1044] gi|297375641|gb|ADI37471.1| type III secretion lipoprotein SctJ [Waddlia chondrophila WSU 86-1044] Length = 341 Score = 104 bits (259), Expect = 5e-20, Method: Composition-based stats. Identities = 43/196 (21%), Positives = 71/196 (36%), Gaps = 18/196 (9%) Query: 32 PIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDNG---------- 80 + + ++ + L+ + N I V LS +D ++ Sbjct: 13 ILFIVISLSLLTGCEKRKTIVNGLDEREANEIVVFLSNEGVDAAKVKSAEGSGGGGSKIA 72 Query: 81 -SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEI 139 ISVP +A L GLP S S +F + + I L +I Sbjct: 73 LWDISVPEEQAIEAMSMLNRAGLPKRSGQSLLGIF-SNTGLVPSEMQERIRYQAGLAEQI 131 Query: 140 ARTIQSISGIVAARVHIVMPDMGSFRKIGARP--TASVMIR---AINPSVYKSAEAIRHL 194 A TI+ G++ A V I P+ + TASV ++ ++ + I+ L Sbjct: 132 ASTIRKFDGVLDAEVQISFPEEDPLNPGQKKGEITASVYVKHSGVLDDPNTHAITKIKRL 191 Query: 195 VAAAVPNLDMGDVTVL 210 V AV L +VTV+ Sbjct: 192 VTGAVTGLKYDNVTVI 207 >gi|218887520|ref|YP_002436841.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758474|gb|ACL09373.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 277 Score = 103 bits (258), Expect = 5e-20, Method: Composition-based stats. Identities = 40/184 (21%), Positives = 69/184 (37%), Gaps = 8/184 (4%) Query: 31 VPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI---SDNGSSISVPS 87 + +F+ LY L N + L + G ++SV Sbjct: 18 AALAVFLLMLLTGCKAE---LYKGLNEEQANTMLATLLRHGVPAEKLAAGKEGYALSVER 74 Query: 88 SMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSIS 147 + +A L LP + ++F + ++ A+ E++ T I Sbjct: 75 DQIVRALEILRENSLPREQYQNLGKVFSGD-GMIASPSEEKARLAYAISQELSDTFSRID 133 Query: 148 GIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS-VYKSAEAIRHLVAAAVPNLDMGD 206 G++ ARVH+V+ + + +A+V +R S V IR L A AVP LD Sbjct: 134 GVLTARVHVVLASSETASETRVPASAAVFLRHGPESPVVNLIPKIRELAAKAVPGLDYER 193 Query: 207 VTVL 210 V+V+ Sbjct: 194 VSVM 197 >gi|229896277|ref|ZP_04511447.1| Flagellar M-ring protein fliF [Yersinia pestis Pestoides A] gi|229701200|gb|EEO89229.1| Flagellar M-ring protein fliF [Yersinia pestis Pestoides A] Length = 115 Score = 103 bits (258), Expect = 6e-20, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 36/68 (52%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 + SP Y LY L D I L++ NI +R +DNG ++ +P+ V + R+ LA Sbjct: 45 MLWAKSPDYRVLYSNLSDRDGGDIVTQLTQLNIPYRFADNGGALLIPAEKVHETRLRLAQ 104 Query: 100 QGLPSSSS 107 QGLP S Sbjct: 105 QGLPKGGS 112 >gi|187919914|ref|YP_001888945.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia phytofirmans PsJN] gi|187718352|gb|ACD19575.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia phytofirmans PsJN] Length = 273 Score = 103 bits (258), Expect = 6e-20, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 5/164 (3%) Query: 51 LYVKLEVSDVNRISVALSE---ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 L+ LE N+I LS+ + R +D ++SV V A LP + Sbjct: 20 LFEGLEEDQANQIIAVLSQHGIEGVKDRSADKKWNVSVDVDDVVSATEITREYALPRDNH 79 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 + +LF + + V L E++ T++ I G++ ARVHIV P+ + Sbjct: 80 ANLGDLFSR-QGLISNPDEDRVRYVYGLTQELSETLEKIDGVLVARVHIVQPERDPLMRQ 138 Query: 168 GARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 A P+ASVM+R + + + IR+LVA +V L V++ Sbjct: 139 VAPPSASVMLRYRSDYNLEYMRDKIRNLVAGSVEGLTPDRVSLT 182 >gi|330443944|ref|YP_004376930.1| type III secretion protein SctJ [Chlamydophila pecorum E58] gi|328807054|gb|AEB41227.1| type III secretion protein SctJ [Chlamydophila pecorum E58] Length = 330 Score = 103 bits (257), Expect = 7e-20, Method: Composition-based stats. Identities = 47/175 (26%), Positives = 71/175 (40%), Gaps = 20/175 (11%) Query: 54 KLEVSDVNRISVALSEANIDFRI------SDNGSS------ISVPSSMVGKARIHLAAQG 101 L + N I V L + + S G S ISVPS+ + +A L G Sbjct: 31 GLPGREANEIVVLLVSKGVAAQKLPKAAASTGGGSTEQLWDISVPSAQITEALAILNQAG 90 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S +LF K + ++I L ++A TI+ + GIV A V I Sbjct: 91 LPRMKGTSLLDLFAK-QGLVPSELQEKIRYQEGLSEQMASTIRKMDGIVDASVQISFSTE 149 Query: 162 GSFRKIGARPTASVMIRAINPSVYKS---AEAIRHLVAAAVPNLDMGDVTVLDST 213 + TASV ++ + A I+ L+A+AVP L +V+V+ Sbjct: 150 ----EDVVPLTASVYVKHRGVLDNPNSIMASKIKRLIASAVPGLTPENVSVVSDR 200 >gi|16082747|ref|NP_395193.1| needle complex inner membrane lipoprotein [Yersinia pestis CO92] gi|31795324|ref|NP_857723.1| needle complex inner membrane lipoprotein [Yersinia pestis KIM] gi|31795467|ref|NP_857918.1| needle complex inner membrane lipoprotein [Yersinia pestis KIM] gi|45478525|ref|NP_995352.1| putative type III secretion lipoprotein YscJ [Yersinia pestis biovar Microtus str. 91001] gi|51593928|ref|YP_068495.1| yscJ, ylpB; putative type III secretion lipoprotein [Yersinia pseudotuberculosis IP 32953] gi|108793648|ref|YP_636797.1| type III secretion lipoprotein [Yersinia pestis Antiqua] gi|145597125|ref|YP_001154589.1| type III secretion lipoprotein [Yersinia pestis Pestoides F] gi|149192680|ref|YP_001293912.1| putative type III secretion lipoprotein [Yersinia pestis CA88-4125] gi|162417757|ref|YP_001604492.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis Angola] gi|165927768|ref|ZP_02223600.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Orientalis str. F1991016] gi|165940079|ref|ZP_02228613.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Orientalis str. IP275] gi|166011735|ref|ZP_02232633.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Antiqua str. E1979001] gi|166214472|ref|ZP_02240507.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Antiqua str. B42003004] gi|167401937|ref|ZP_02307423.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422389|ref|ZP_02314142.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167422456|ref|ZP_02314209.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167422890|ref|ZP_02314643.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426845|ref|ZP_02318598.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186897504|ref|YP_001874615.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Yersinia pseudotuberculosis PB1/+] gi|229896875|ref|ZP_04512035.1| putative type III secretion lipoprotein [Yersinia pestis Pestoides A] gi|229900230|ref|ZP_04515366.1| putative type III secretion lipoprotein [Yersinia pestis biovar Orientalis str. India 195] gi|270491089|ref|ZP_06208161.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Yersinia pestis KIM D27] gi|294496851|ref|YP_003560548.1| needle complex inner membrane lipoprotein [Yersinia pestis Z176003] gi|322836586|ref|YP_004210082.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis Java 9] gi|57015226|sp|P69972|YSCJ_YERPE RecName: Full=Yop proteins translocation lipoprotein J; AltName: Full=Lipoprotein ylpB; AltName: Full=Low calcium response locus protein KA; Flags: Precursor gi|57015227|sp|P69973|YSCJ_YERPS RecName: Full=Yop proteins translocation lipoprotein J; AltName: Full=Lipoprotein ylpB; AltName: Full=Low calcium response locus protein KA; Flags: Precursor gi|155466|gb|AAA27651.1| lcrKa [Yersinia pseudotuberculosis] gi|2996284|gb|AAC62607.1| Yop proteins translocation lipoprotein J [Yersinia pestis KIM 10] gi|3822055|gb|AAC69775.1| type III secretion protein [Yersinia pestis KIM 10] gi|5832479|emb|CAB54936.1| putative type III secretion lipoprotein [Yersinia pestis CO92] gi|45357147|gb|AAS58543.1| putative type III secretion lipoprotein YscJ [Yersinia pestis biovar Microtus str. 91001] gi|51591625|emb|CAF25429.1| yscJ, ylpB; putative type III secretion lipoprotein [Yersinia pseudotuberculosis IP 32953] gi|108782195|gb|ABG16250.1| type III secretion lipoprotein [Yersinia pestis Antiqua] gi|145212893|gb|ABP42299.1| type III secretion lipoprotein [Yersinia pestis Pestoides F] gi|148872338|gb|ABR14828.1| putative type III secretion lipoprotein [Yersinia pestis CA88-4125] gi|162354777|gb|ABX88724.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis Angola] gi|165911989|gb|EDR30632.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Orientalis str. IP275] gi|165920204|gb|EDR37505.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Orientalis str. F1991016] gi|165989342|gb|EDR41643.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Antiqua str. E1979001] gi|166204365|gb|EDR48845.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Antiqua str. B42003004] gi|166958180|gb|EDR55201.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Orientalis str. MG05-1020] gi|166958626|gb|EDR55647.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Orientalis str. MG05-1020] gi|166958693|gb|EDR55714.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048665|gb|EDR60073.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054144|gb|EDR63971.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186700530|gb|ACC91158.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Yersinia pseudotuberculosis PB1/+] gi|229686750|gb|EEO78830.1| putative type III secretion lipoprotein [Yersinia pestis biovar Orientalis str. India 195] gi|229700146|gb|EEO88185.1| putative type III secretion lipoprotein [Yersinia pestis Pestoides A] gi|262363863|gb|ACY60583.1| needle complex inner membrane lipoprotein [Yersinia pestis D106004] gi|262364019|gb|ACY64356.1| needle complex inner membrane lipoprotein [Yersinia pestis D182038] gi|270334832|gb|EFA45611.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Yersinia pestis KIM D27] gi|294352439|gb|ADE66496.1| needle complex inner membrane lipoprotein [Yersinia pestis Z176003] gi|317374463|gb|ADV16638.1| type III secretion bridge between inner and outermembrane lipoprotein [Yersinia pestis] gi|320017494|gb|ADW01065.1| putative type III secretion lipoprotein [Yersinia pestis biovar Medievalis str. Harbin 35] gi|321161360|gb|ADW67066.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis Java 9] Length = 244 Score = 103 bits (257), Expect = 8e-20, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 73/167 (43%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGLPSS 105 +LY + + N + L + + + + V S V +A L +G P Sbjct: 21 VDLYTGISQKEGNEMLALLRQEGLSADKEPDKDGKIKLLVEESDVAQAIDILKRKGYPHE 80 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 S ++ ++F K + + A EI+RT+ I G++ ARVH+V+P+ + + Sbjct: 81 SFSTLQDVFPKD-GLISSPIEELARLNYAKAQEISRTLSEIDGVLVARVHVVLPEEQNNK 139 Query: 166 -KIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 K G +ASV I+ + + I+ LV ++ L ++V+ Sbjct: 140 GKKGVAASASVFIKHAADIQFDTYIPQIKQLVNNSIEGLAYDRISVI 186 >gi|170737791|ref|YP_001779051.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Burkholderia cenocepacia MC0-3] gi|169819979|gb|ACA94561.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia cenocepacia MC0-3] Length = 295 Score = 103 bits (257), Expect = 8e-20, Method: Composition-based stats. Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 10/170 (5%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDNG--------SSISVPSSMVGKARIHLAAQ 100 LY L D N++ L +A I ++ +SV + A L A Sbjct: 34 KELYSGLSERDANQMVAVLGDAGISASKDNDARDTSDRNAWLVSVADGDMQAALTVLQAN 93 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S S ELF K T + + + + +++RT+Q I G+V ARV +V+P+ Sbjct: 94 GLPKPSYASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSRTLQDIEGVVVARVQVVIPE 152 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209 +A+V IR ++ A ++ LVA ++ L +V++ Sbjct: 153 NDPLADKIKPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 202 >gi|312958838|ref|ZP_07773357.1| type III secretion system rscJ [Pseudomonas fluorescens WH6] gi|311286608|gb|EFQ65170.1| type III secretion system rscJ [Pseudomonas fluorescens WH6] Length = 265 Score = 103 bits (256), Expect = 9e-20, Method: Composition-based stats. Identities = 41/181 (22%), Positives = 79/181 (43%), Gaps = 24/181 (13%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSM----------VGKARIH 96 L+ +L + N + L++ +I + VP+ +G+A Sbjct: 22 ERVELHRQLSEQEANEVIAELADKHIRAQ--------KVPAKDGVVVVVDAVDIGRAVRT 73 Query: 97 LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHI 156 L A GLP + + + F K T + + AL E+ T+ +I G++ ARVH+ Sbjct: 74 LEAVGLPKVARTTLGDTFRKDGVI-STPLEERARYIYALSQELEATLSNIDGVIVARVHV 132 Query: 157 VMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVTVLDSTGK 215 V+P+ + + +ASV I+ + + +R +VA+++P + T +D+ K Sbjct: 133 VLPERIAPGEPVQPASASVFIKHDPRLDPDNIRSRVRRMVASSIPGMS----TTVDNPQK 188 Query: 216 L 216 L Sbjct: 189 L 189 >gi|107025872|ref|YP_623383.1| Type III secretion system lipoprotein HrcJ/YscJ [Burkholderia cenocepacia AU 1054] gi|116692944|ref|YP_838477.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Burkholderia cenocepacia HI2424] gi|105895246|gb|ABF78410.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia cenocepacia AU 1054] gi|116650944|gb|ABK11584.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia cenocepacia HI2424] Length = 292 Score = 103 bits (256), Expect = 9e-20, Method: Composition-based stats. Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 10/170 (5%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDNG--------SSISVPSSMVGKARIHLAAQ 100 LY L D N++ L +A I ++ +SV + A L A Sbjct: 34 KELYSGLSERDANQMVAVLGDAGISASKDNDARDTSDRNAWLVSVADGDMQAALTVLQAN 93 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S S ELF K T + + + + +++RT+Q I G+V ARV +V+P+ Sbjct: 94 GLPKPSYASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSRTLQDIEGVVVARVQVVIPE 152 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209 +A+V IR ++ A ++ LVA ++ L +V++ Sbjct: 153 NDPLADKIKPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 202 >gi|206563892|ref|YP_002234655.1| type III secretion system protein [Burkholderia cenocepacia J2315] gi|18092671|gb|AAL59400.1| BcscJ [Burkholderia cenocepacia] gi|28394252|gb|AAO31727.1| BcscJ [Burkholderia cenocepacia] gi|198039932|emb|CAR55910.1| type III secretion system protein [Burkholderia cenocepacia J2315] Length = 294 Score = 103 bits (256), Expect = 1e-19, Method: Composition-based stats. Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 10/170 (5%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDNG--------SSISVPSSMVGKARIHLAAQ 100 LY L D N++ L +A I ++ +SV + A L A Sbjct: 34 KELYSGLSERDANQMVAVLGDAGISASKDNDARDTSDRNAWLVSVADGDMQAALTVLQAN 93 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S S ELF K T + + + + +++RT+Q I G+V ARV +V+P+ Sbjct: 94 GLPKPSYASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSRTLQDIEGVVVARVQVVIPE 152 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209 +A+V IR ++ A ++ LVA ++ L +V++ Sbjct: 153 NDPLADKIKPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 202 >gi|291562021|emb|CBL40836.1| Flagellar biosynthesis/type III secretory pathway lipoprotein [butyrate-producing bacterium SS3/4] Length = 420 Score = 103 bits (256), Expect = 1e-19, Method: Composition-based stats. Identities = 45/307 (14%), Positives = 94/307 (30%), Gaps = 31/307 (10%) Query: 113 LFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR---KIGA 169 ++ T +E + L+ + I G+ A+V I + Sbjct: 1 MYRNNAGIMSTEKDKEKYTLYELQDRLGAQIGLFEGVRDAKVTIAEGGTQKYALDDTQQT 60 Query: 170 RPTASVMIRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL 227 +ASV++ A AI++L+A AV ++ +V+V D+ + E E Sbjct: 61 DASASVVVTMDPGQDLTDTKAAAIKNLIARAVKGMNFTNVSVFDAATMMEVGGEDEAGNT 120 Query: 228 GKS----LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK 283 + + ++ I N+ + L G +V LNM + Y K Sbjct: 121 AGTGKDVAELTSQVEKSIAGNVRRVLELMYGQGKVAVSVKGTLNMQKLIQETVQYTTPDK 180 Query: 284 V---------ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEE 334 V E+ ++ + + +A + + Sbjct: 181 VDQNDKTGLLEKEETAGENTGSTSSGNGGAAGADANADTPRYTGQTGTQAGSDTYSNNSA 240 Query: 335 QSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSA 394 + N+ D LE ++ V ++ + A++ +V+ Sbjct: 241 IREWLYNSTKEQRQIDPGVLENTTVGVTIDTDDTSIAD-------------ADLVSLVAN 287 Query: 395 ATGINSR 401 + GI Sbjct: 288 SAGITQE 294 >gi|254250200|ref|ZP_04943520.1| Secretory protein YscJ/FliF [Burkholderia cenocepacia PC184] gi|124876701|gb|EAY66691.1| Secretory protein YscJ/FliF [Burkholderia cenocepacia PC184] Length = 238 Score = 103 bits (256), Expect = 1e-19, Method: Composition-based stats. Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 10/170 (5%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDNG--------SSISVPSSMVGKARIHLAAQ 100 LY L D N++ L +A I ++ +SV + A L A Sbjct: 34 KELYSGLSERDANQMVAVLGDAGISASKDNDARDTSDRNAWLVSVADGDMQAALTVLQAN 93 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S S ELF K T + + + + +++RT+Q I G+V ARV +V+P+ Sbjct: 94 GLPKPSYASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSRTLQDIEGVVVARVQVVIPE 152 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209 +A+V IR ++ A ++ LVA ++ L +V++ Sbjct: 153 NDPLADKIKPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 202 >gi|94987605|ref|YP_595538.1| putative type III secretion protein [Lawsonia intracellularis PHE/MN1-00] gi|94731854|emb|CAJ55217.1| putative type III secretion protein [Lawsonia intracellularis PHE/MN1-00] Length = 278 Score = 103 bits (256), Expect = 1e-19, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 64/166 (38%), Gaps = 5/166 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGLPSS 105 +Y L N + L + I + G +I V S + ++ L G P Sbjct: 43 VEVYQGLNEMQANAMLATLLKHGIVAEKQNTGKAGYTIRVDKSRLAESLELLRESGFPKE 102 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 S +F ++ + AL E+A T ISG+++ARVH+ + Sbjct: 103 QYKSLGSIF-SGEGMIASASEDQARLSYALSQELAGTFSRISGVLSARVHVALASGDQEL 161 Query: 166 KIGARPTASVMIRAINPS-VYKSAEAIRHLVAAAVPNLDMGDVTVL 210 + +A++ + S V IR L + +VP L V+V+ Sbjct: 162 EQRTPASAAIFLLHTPSSPVVNLVPKIRELTSMSVPELSPDKVSVV 207 >gi|257487964|ref|ZP_05642005.1| type III secretion component, putative [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 222 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 43/154 (27%), Positives = 72/154 (46%), Gaps = 7/154 (4%) Query: 62 RISVALSEANIDF--RISDNGS-SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 + L I ++ DNG + V +A L GLP S ++ E+F K N Sbjct: 1 AMLAVLLRDGIPASRKVQDNGQLKVMVDEKRFAQAMAALDDAGLPGQSFSNMGEVF-KGN 59 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178 + + V AL E++ T+ I GI++ARVH+V+PD +++ + +ASV++R Sbjct: 60 GLVSSPVQERAQMVYALSEELSHTVSQIDGILSARVHVVLPDNDLLKRVISPSSASVLVR 119 Query: 179 AINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVL 210 +P + I+ LVA + L V+V Sbjct: 120 -FDPRTDINVLIPQIKTLVANGISGLGYDGVSVT 152 >gi|328468926|gb|EGF39886.1| putative type III secretion lipoprotein [Vibrio parahaemolyticus 10329] Length = 248 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 74/188 (39%), Gaps = 13/188 (6%) Query: 28 VILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---IS 84 + + + LF+ LY + + N + L + + + + Sbjct: 8 ALCLVLALFLVGC-------QTELYTNVSQKEGNEMLSILLSEGVVATKEPDKDNKVKLM 60 Query: 85 VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144 V SS + A L +G P ++ E+F K + + + V A E++ T+ Sbjct: 61 VDSSQIAFAVDALKRKGYPREQFSTLKEVFPKDD-LISSPLAERARLVYAKSQELSSTLS 119 Query: 145 SISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNL 202 I G++ ARVH+V+ D + +ASV I+ S I+ LV ++ L Sbjct: 120 QIDGVLVARVHVVLEDQDLRPGERPTPASASVFIKHAADVALDSYVPQIKLLVNNSIEGL 179 Query: 203 DMGDVTVL 210 + ++V+ Sbjct: 180 NYDRISVV 187 >gi|62185504|ref|YP_220289.1| putative type III export protein [Chlamydophila abortus S26/3] gi|62148571|emb|CAH64343.1| putative type III export protein [Chlamydophila abortus S26/3] Length = 330 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 73/196 (37%), Gaps = 21/196 (10%) Query: 35 LFMAARFF--VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS------------DNG 80 LF F + + L + N I V L + + + Sbjct: 10 LFFIMTLFCCTSCNSRSLIVHGLAGREANEIVVLLVSKGVAAQKQPQAAASTGGASAEQL 69 Query: 81 SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140 ISVP++ + +A L GLP S +LF K + ++I L ++A Sbjct: 70 WDISVPAAQITEALAILNQAGLPRMKGTSLLDLFAK-QGLVPSEMQEKIRYQEGLSEQMA 128 Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS---AEAIRHLVAA 197 TI+ + GIV A V I + TASV I+ + I+ LVA+ Sbjct: 129 STIRKMDGIVDASVQISFTTE---AEDNLPLTASVYIKHRGVLDNPNSIMVSKIKRLVAS 185 Query: 198 AVPNLDMGDVTVLDST 213 AVP L +V+V+ Sbjct: 186 AVPGLSTENVSVISDR 201 >gi|134294015|ref|YP_001117751.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Burkholderia vietnamiensis G4] gi|134137172|gb|ABO58286.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia vietnamiensis G4] Length = 297 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 10/170 (5%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDNG--------SSISVPSSMVGKARIHLAAQ 100 LY L D N + L +A I ++ +SV + A L A Sbjct: 34 KELYSGLSERDANEMVAVLGDAGIGASKDNDARDTSDRNAWQVSVADGDMQSALTVLQAN 93 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S S ELF K T + + + + +++RT+Q I G+V ARV +V+P+ Sbjct: 94 GLPKPSYASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSRTLQDIEGVVVARVQVVIPE 152 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209 +A+V IR ++ A ++ LVA ++ L +V++ Sbjct: 153 NDPLADKIKPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 202 >gi|10955579|ref|NP_052420.1| hypothetical protein pYVe227_p43 [Yersinia enterocolitica] gi|28373017|ref|NP_783695.1| hypothetical protein pYVa12790_p42 [Yersinia enterocolitica] gi|32470307|ref|NP_863542.1| hypothetical protein pYVe8081_p37 [Yersinia enterocolitica] gi|122815831|ref|YP_001004097.1| type III secretion lipoprotein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332163601|ref|YP_004424943.1| type III secretion lipoprotein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|267571|sp|Q01251|YSCJ_YEREN RecName: Full=Yop proteins translocation lipoprotein J; AltName: Full=Lipoprotein ylpB; Flags: Precursor gi|14579365|gb|AAK69242.1|AF336309_37 YscJ [Yersinia enterocolitica] gi|155559|gb|AAC37027.1| yscJ [Yersinia enterocolitica] gi|4324366|gb|AAD16843.1| YscJ [Yersinia enterocolitica W22703] gi|28302112|gb|AAN37545.2| YscJ [Yersinia enterocolitica] gi|121663705|emb|CAL10067.1| type III secretion lipoprotein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|325667831|gb|ADZ44474.1| type III secretion lipoprotein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 244 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 73/167 (43%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGLPSS 105 +LY + + N + L + + + + V S V +A L +G P Sbjct: 21 VDLYTGISQKEGNEMLALLRQEGLSADKEPDKDGKIKLLVEESDVAQAIDILKRKGYPHE 80 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 S ++ ++F K + + A EI+RT+ I G++ ARVH+V+P+ + + Sbjct: 81 SFSTLQDVFPKD-GLISSPIEELARLNYAKAQEISRTLSEIDGVLVARVHVVLPEEQNNK 139 Query: 166 -KIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 K G +ASV I+ + + I+ LV ++ L ++V+ Sbjct: 140 GKKGVAASASVFIKHAADIQFDTYIPQIKQLVNNSIEGLAYDRISVI 186 >gi|153836290|ref|ZP_01988957.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio parahaemolyticus AQ3810] gi|149750565|gb|EDM61310.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio parahaemolyticus AQ3810] Length = 248 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 74/188 (39%), Gaps = 13/188 (6%) Query: 28 VILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---IS 84 + + + LF+ LY + + N + L + + + + Sbjct: 8 TLCLVLALFLVGC-------QTELYTNVSQKEGNEMLSILLSEGVVATKEPDKDNKVKLM 60 Query: 85 VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144 V SS + A L +G P ++ E+F K + + + V A E++ T+ Sbjct: 61 VDSSQIAFAVDALKRKGYPREQFSTLKEVFPKDD-LISSPLAERARLVYAKSQELSSTLS 119 Query: 145 SISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNL 202 I G++ ARVH+V+ D + +ASV I+ S I+ LV ++ L Sbjct: 120 QIDGVLVARVHVVLEDQDLRPGERPTPASASVFIKHAADVALDSYVPQIKLLVNNSIEGL 179 Query: 203 DMGDVTVL 210 + ++V+ Sbjct: 180 NYDRISVV 187 >gi|695778|emb|CAA55109.1| lcrKa [Yersinia pestis] Length = 236 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 73/167 (43%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGLPSS 105 +LY + + N + L + + + + V S V +A L +G P Sbjct: 13 VDLYTGISQKEGNEMLALLPQEGLSADKEPDKDGKIKLLVEESDVAQAIDILKRKGYPHE 72 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 S ++ ++F K + + A EI+RT+ I G++ ARVH+V+P+ + + Sbjct: 73 SFSTLQDVFPKD-GLISSPIEELARLNYAKAQEISRTLSEIDGVLVARVHVVLPEEQNNK 131 Query: 166 -KIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 K G +ASV I+ + + I+ LV ++ L ++V+ Sbjct: 132 GKKGVAASASVFIKHAADIQFDTYIPQIKQLVNNSIEGLAYDRISVI 178 >gi|28898464|ref|NP_798069.1| putative type III secretion lipoprotein [Vibrio parahaemolyticus RIMD 2210633] gi|260365094|ref|ZP_05777665.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio parahaemolyticus K5030] gi|260879510|ref|ZP_05891865.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio parahaemolyticus AN-5034] gi|260895015|ref|ZP_05903511.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio parahaemolyticus Peru-466] gi|28806682|dbj|BAC59953.1| putative type III secretion lipoprotein [Vibrio parahaemolyticus RIMD 2210633] gi|308085933|gb|EFO35628.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio parahaemolyticus Peru-466] gi|308093438|gb|EFO43133.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio parahaemolyticus AN-5034] gi|308111628|gb|EFO49168.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio parahaemolyticus K5030] Length = 248 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 74/188 (39%), Gaps = 13/188 (6%) Query: 28 VILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---IS 84 + + + LF+ LY + + N + L + + + + Sbjct: 8 TLCLVLALFLVGC-------QTELYTNVSQKEGNEMLSILLSEGVVATKEPDKDNKVKLM 60 Query: 85 VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144 V SS + A L +G P ++ E+F K + + + V A E++ T+ Sbjct: 61 VDSSQIAFAVDALKRKGYPREQFSTLKEVFPKDD-LISSPLAERARLVYAKSQELSSTLS 119 Query: 145 SISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNL 202 I G++ ARVH+V+ D + +ASV I+ S I+ LV ++ L Sbjct: 120 QIDGVLVARVHVVLEDQDLRPGERPTPASASVFIKHAADVALDSYVPQIKLLVNNSIEGL 179 Query: 203 DMGDVTVL 210 + ++V+ Sbjct: 180 NYDRISVV 187 >gi|51103218|gb|AAT96359.1| HrcJ [Pseudomonas viridiflava] Length = 263 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 75/156 (48%), Gaps = 4/156 (2%) Query: 51 LYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108 L+ L D N + L+ NID R+ G ++ V + + +A L A GLP S + Sbjct: 27 LHRDLTEQDANEVLAELASKNIDAQKRLDKGGVAVLVSTQDISRAVRVLEAVGLPRRSRS 86 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 + ++F K + + + AL E+ +T+ I G+V ARVH+V+P+ + + Sbjct: 87 TLGQVFRKEGVI-SSPLEERARYIYALSQELEQTLSQIDGVVVARVHVVLPERIAPGEPV 145 Query: 169 ARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLD 203 +A+V I+ S IR +VA+++P + Sbjct: 146 QPASAAVFIKHRADLEPDSVLPRIRRMVASSIPGMT 181 >gi|197121159|ref|YP_002133110.1| secretory protein YscJ/FliF family protein [Anaeromyxobacter sp. K] gi|196171008|gb|ACG71981.1| secretory protein YscJ/FliF family protein [Anaeromyxobacter sp. K] Length = 239 Score = 101 bits (252), Expect = 3e-19, Method: Composition-based stats. Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 7/134 (5%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRIS-----DNGSSISVPSSMVGKARIHLAAQGLP 103 + L L+ N + VAL E I + D G + V + +AR LA + LP Sbjct: 20 EALLHGLDEPQANDVLVALDEGGIAAEKAREDGADAGWEVRVAPADAVRARRVLAERDLP 79 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 +G++ S T+ + + AL GE+AR+I++I G+V ARVH+ +P Sbjct: 80 RQ-RPAGFDAVLAKGSMVPTATEEHALYLHALSGELARSIEAIDGVVGARVHLGLPQADP 138 Query: 164 FRKIGAR-PTASVM 176 FR P A+V+ Sbjct: 139 FRPGERPAPRAAVL 152 >gi|29840690|ref|NP_829796.1| type III secretion protein SctJ [Chlamydophila caviae GPIC] gi|29835040|gb|AAP05674.1| type III secretion protein SctJ [Chlamydophila caviae GPIC] Length = 330 Score = 101 bits (252), Expect = 3e-19, Method: Composition-based stats. Identities = 44/175 (25%), Positives = 68/175 (38%), Gaps = 19/175 (10%) Query: 54 KLEVSDVNRISVALSEANIDFRIS------------DNGSSISVPSSMVGKARIHLAAQG 101 L + N I V L + + + ISVP+ + +A L G Sbjct: 31 GLPGREANEIVVLLVSKGVAAQKQPQAAASTGGAATEQLWDISVPAPQITEALAILNQAG 90 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S +LF K + ++I L ++A TI+ + GIV A V I Sbjct: 91 LPRMKGTSLLDLFAK-QGLVPSEMQEKIRYQEGLSEQMASTIRKMDGIVDASVQISFTTD 149 Query: 162 GSFRKIGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDST 213 + TASV I+ ++ I+ LVA+AVP L +V+V+ Sbjct: 150 ---AEDNLPLTASVYIKHRGVLDNPNSIMVSKIKRLVASAVPGLSTENVSVISDR 201 >gi|110632466|ref|YP_672674.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Mesorhizobium sp. BNC1] gi|110283450|gb|ABG61509.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Chelativorans sp. BNC1] Length = 266 Score = 101 bits (251), Expect = 4e-19, Method: Composition-based stats. Identities = 43/192 (22%), Positives = 75/192 (39%), Gaps = 11/192 (5%) Query: 18 GRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS 77 R R+ L +V+L + + LY L + N + L E +ID Sbjct: 12 SRPRLSRLGAVLLAFALCAFLSA------CKVPLYSGLSEQEANDMLGKLLEYDIDATKQ 65 Query: 78 DNGS---SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134 + ++ V + G+A L + GLP + ++F + + A Sbjct: 66 ADKDNYITLLVDEAQFGQAVDLLKSFGLPRPQFETIGKVFTGD-GLVTSPVKEWARLNFA 124 Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM-IRAINPSVYKSAEAIRH 193 L E+++ + SI G+V A V I P + P+ASV+ I + + IR Sbjct: 125 LSQELSKMVSSIPGVVLAEVQIANPRKTTPFDEVPPPSASVLAIVNRSAVTAELVPRIRQ 184 Query: 194 LVAAAVPNLDMG 205 LVA ++ N+ Sbjct: 185 LVAHSIENVQYE 196 >gi|46562142|ref|YP_009157.1| type III secretion lipoprotein [Desulfovibrio vulgaris str. Hildenborough] gi|46447679|gb|AAS94345.1| type III secretion lipoprotein [Desulfovibrio vulgaris str. Hildenborough] gi|311235505|gb|ADP88358.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Desulfovibrio vulgaris RCH1] Length = 271 Score = 101 bits (251), Expect = 4e-19, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 65/164 (39%), Gaps = 5/164 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGLPSSSS 107 LY L N + L + I+ NG ++SV V +A L LP Sbjct: 34 LYKGLNEEQANTMLATLLKRGIEVDKQSEGKNGYTLSVERRQVVQALEVLRENSLPREQY 93 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 S ++F + ++ A+ E+A T I G++ AR H+V+ Sbjct: 94 QSLGKVFSGD-GMIASPSEEKARLSYAISQELADTFSRIDGVLTARAHVVLASSDVGTDT 152 Query: 168 GARPTASVMIR-AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 +A+V +R + V IR + A AVP LD V+V+ Sbjct: 153 RTPASAAVFLRHTEDSPVVNLIPKIREMTAKAVPGLDYEKVSVM 196 >gi|167842284|ref|ZP_02468968.1| type III secretion system apparatus lipoprotein [Burkholderia thailandensis MSMB43] Length = 247 Score = 100 bits (250), Expect = 5e-19, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 68/166 (40%), Gaps = 6/166 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLPSS 105 LY L ++ N++ L +ID I D +I V A L GLP+ Sbjct: 23 TELYSNLPEAEANQMLALLMLRHIDADKKVIKDGNVTIRVEPGQFVNAVELLRQNGLPAR 82 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 + E+F + ++ E ++ + ++++ G++ A+V + R Sbjct: 83 KLATMEEMFPSGQ-LVTSPAQEQAKIQFLKEQQLEKMLRAMDGVINAQVSVAEGAAQD-R 140 Query: 166 KIGARPTASVMIRAINP-SVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 + P+A+V ++ + IR LV + VPNL V+V+ Sbjct: 141 RDPEPPSAAVFVKYSPEYNFAARVPEIRSLVVSGVPNLSPERVSVV 186 >gi|257484919|ref|ZP_05638960.1| flagellar MS-ring protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 145 Score = 100 bits (250), Expect = 6e-19, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 64/166 (38%), Gaps = 27/166 (16%) Query: 395 ATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALVFLVGTL 450 A G ++ RGD++++ ++ F + Q F DI+ + VG + Sbjct: 1 AVGFDASRGDSVSVINVPFSSERAEVLPEASFYSQPWFWDIVKQ-----------AVGVI 49 Query: 451 LVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF 509 + L LR L NI K E+ G G + ND ++L + Sbjct: 50 FILILVFGVLRPVLTNITTGKSKELAGFGG-DAELGGMGGLDGELSNDRVSLGGPQSILL 108 Query: 510 -SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 S + +++N+ + ++ + R A+++++W ++ Sbjct: 109 PSPTEGYDAQLNA---------IKSLVAEDPGRVAQVVKEWINTDE 145 >gi|120586845|ref|YP_961190.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Desulfovibrio vulgaris subsp. vulgaris DP4] gi|120564259|gb|ABM30002.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Desulfovibrio vulgaris DP4] Length = 271 Score = 100 bits (249), Expect = 6e-19, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 65/164 (39%), Gaps = 5/164 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGLPSSSS 107 LY L N + L + I+ NG ++SV V +A L LP Sbjct: 34 LYKGLNEEQANTMLATLLKRGIEVDKQSEGKNGYTLSVERRQVVQALEVLRENSLPREQY 93 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 S ++F + ++ A+ E+A T I G++ AR H+V+ Sbjct: 94 QSLGKVFSGD-GMIASPSEEKARLSYAISQELADTFSRIDGVLTARAHVVLASSDVGTDT 152 Query: 168 GARPTASVMIR-AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 +A+V +R + V IR + A AVP LD V+V+ Sbjct: 153 RTPASAAVFLRHTEDSPVVNLIPKIREMTAKAVPGLDYEKVSVM 196 >gi|32474826|ref|NP_867820.1| polar flagellar M-ring protein FliF [Rhodopirellula baltica SH 1] gi|32445366|emb|CAD75367.1| probable polar flagellar M-ring protein FliF [Rhodopirellula baltica SH 1] gi|327539960|gb|EGF26559.1| polar flagellar M-ring protein FliF [Rhodopirellula baltica WH47] Length = 545 Score = 100 bits (249), Expect = 7e-19, Method: Composition-based stats. Identities = 85/566 (15%), Positives = 173/566 (30%), Gaps = 48/566 (8%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 L QF +++ +I ++ I+ ++P + L S+ Sbjct: 6 LDQFRSIYSTMPVPSRIIAGLLLTAIIVAMGFLVRGNSTPSSEYLLGGRSFSE-----RD 60 Query: 67 LSEANIDFRISD------NGSSISVPSSMVGKARIHL-AAQGLPSSSSNSGYELFDKVNS 119 L A + F +D G I +P + L ++ LP S S +K + Sbjct: 61 LDAAEVAFGNADLRGWTREGRRIKIPIESRSEFLKALESSASLPLSLRTSVQAAIEKSSP 120 Query: 120 FGLTSFMQEITRVR-ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178 F S Q + R R A +IAR+I + ARV + + + +ASV + Sbjct: 121 FE--SNEQRMARERNAKLLDIARSIMMFDEVRTARVEYDQGERMGLSRTRPQ-SASVTVE 177 Query: 179 AIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL---LTANEMERNILGKSLSI 233 P I+ LV AA + DV V D+ G L ++ + + Sbjct: 178 PEGIAPLSRDRIFQIKDLVRAAFAGMSTDDVVVTDTNGSSAFGLAEDDDPLSRKRREEEE 237 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293 + I L +G A E++ + D + K Sbjct: 238 RFEM------KIRNHL---MGYGKIHVATHVEIDPTMSTETASLSYEDQPTTLNETSRKR 288 Query: 294 AQRSETSQPESAVTVEQN-MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 S P + N + K+ T + E SN + T Sbjct: 289 ETESSRPMPGGVPGAQTNALSSNRPVKLDATAQTSKTKEDERTSNRVAGQEYSTTRMAGL 348 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS-- 410 ++R+ +++ + + +V + + D + +I ++ + D +T+ Sbjct: 349 PVKRVKVSIGLPRSYYKKVWTKQQLETNPDQTVDDIKQMETT---------DLVTLKEQT 399 Query: 411 ----MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 + L + + F + + + + T + L + + Sbjct: 400 ETEIQQAVTALLPDVAAGEDRFPLVQVWDYIDLPEPEMDSPATAAIALSWLSDSWQTLAM 459 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 + +A T + L + + + +++ Sbjct: 460 LGLAAAALLIARSSVKSLSGNADPTDFKEGFGLELPAPPIAVEEQTEKVEAM--EITGGS 517 Query: 527 SDLRLLHMIEINEERFAKILRKWARS 552 L+ ++E N E A ++R W Sbjct: 518 LQDELVALVEDNPEVAANVIRSWVGE 543 >gi|51103136|gb|AAT96279.1| HrcJ [Pseudomonas viridiflava] gi|51103178|gb|AAT96320.1| HrcJ [Pseudomonas viridiflava] Length = 263 Score = 100 bits (248), Expect = 9e-19, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 75/156 (48%), Gaps = 4/156 (2%) Query: 51 LYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108 L+ L D N + L+ NID R+ G ++ V + + +A L A GLP S + Sbjct: 27 LHRDLTEQDANEVLAELAGKNIDAQKRLDKGGVAVLVSTQDISRAVRVLEAVGLPRRSRS 86 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 + ++F K + + + AL E+ +T+ I G+V ARVH+V+P+ + + Sbjct: 87 TLGQVFRKEGVI-SSPLEERARYIYALSQELEQTLSQIDGVVVARVHVVLPERIAPGEPV 145 Query: 169 ARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLD 203 +A+V I+ S IR +VA+++P + Sbjct: 146 QPASAAVFIKHRADLEPDSVLPRIRRMVASSIPGMT 181 >gi|269963158|ref|ZP_06177493.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832122|gb|EEZ86246.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 247 Score = 99.7 bits (247), Expect = 1e-18, Method: Composition-based stats. Identities = 37/188 (19%), Positives = 74/188 (39%), Gaps = 13/188 (6%) Query: 28 VILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS---DNGSSIS 84 + ++LF+ LY + + N + L + DN + Sbjct: 7 AACMLLVLFLVGC-------QTELYTGVSQKEGNEMLSILLSEGVVATKEPDKDNTVKLM 59 Query: 85 VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144 V ++ + A L +G P ++ E+F K + + + + A E++ T+ Sbjct: 60 VDNAQIAFAVDALKRKGYPREQFSTLKEVFPKDD-LISSPLAERARLIYAKSQELSSTLS 118 Query: 145 SISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNL 202 I G++ ARVH+V+ D + +ASV I+ S I+ LV ++ L Sbjct: 119 QIDGVLVARVHVVLEDQNLRPGERPTPASASVFIKHAADVALDSYVPQIKLLVNNSIEGL 178 Query: 203 DMGDVTVL 210 + ++V+ Sbjct: 179 NYDRISVV 186 >gi|254228230|ref|ZP_04921659.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio sp. Ex25] gi|262394115|ref|YP_003285969.1| type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ PscJ) [Vibrio sp. Ex25] gi|151939303|gb|EDN58132.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio sp. Ex25] gi|262337709|gb|ACY51504.1| type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ PscJ) [Vibrio sp. Ex25] Length = 247 Score = 99.7 bits (247), Expect = 1e-18, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 73/182 (40%), Gaps = 7/182 (3%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS---DNGSSISVPSSMV 90 +F+ F+ LY + + N + L + DN + V SS + Sbjct: 7 AVFIMLTLFLVG-CQTELYTNVTQKEGNEMLSILLSEGVVATKEPDKDNTVKLMVDSSQI 65 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A L +G P ++ E+F K + + + V A E++ T+ I G++ Sbjct: 66 AFAVDALKRKGYPREQFSTLKEVFPKDD-LISSPLAERARLVYAKSQELSSTLSQIDGVL 124 Query: 151 AARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVT 208 ARVH+V+ D + +ASV I+ S I+ LV ++ L+ ++ Sbjct: 125 VARVHVVLEDQDLRPGERPTPASASVFIKHAADIALDSYVPQIKLLVNNSIEGLNYDRIS 184 Query: 209 VL 210 V+ Sbjct: 185 VV 186 >gi|91224456|ref|ZP_01259718.1| putative type III secretion lipoprotein [Vibrio alginolyticus 12G01] gi|91190798|gb|EAS77065.1| putative type III secretion lipoprotein [Vibrio alginolyticus 12G01] gi|262284512|gb|ACY41049.1| VscJ [Vibrio alginolyticus] Length = 247 Score = 99.7 bits (247), Expect = 1e-18, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 73/182 (40%), Gaps = 7/182 (3%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS---DNGSSISVPSSMV 90 +F+ F+ LY + + N + L + DN + V SS + Sbjct: 7 AVFIMLTLFLVG-CQTELYTNVTQKEGNEMLSILLSEGVVATKEPDKDNTVKLMVDSSQI 65 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A L +G P ++ E+F K + + + V A E++ T+ I G++ Sbjct: 66 AFAVDALKRKGYPREQFSTLKEVFPKDD-LISSPLAERARLVYAKSQELSSTLSQIDGVL 124 Query: 151 AARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVT 208 ARVH+V+ D + +ASV I+ S I+ LV ++ L+ ++ Sbjct: 125 VARVHVVLEDQDLRPGERPTPASASVFIKHAADIALDSYVPQIKLLVNNSIEGLNYDRIS 184 Query: 209 VL 210 V+ Sbjct: 185 VV 186 >gi|34498043|ref|NP_902258.1| type III secretion system apparatus lipoprotein [Chromobacterium violaceum ATCC 12472] gi|34103898|gb|AAQ60258.1| type III secretion system apparatus lipoprotein [Chromobacterium violaceum ATCC 12472] Length = 241 Score = 98.9 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 71/166 (42%), Gaps = 6/166 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLPSS 105 +LY L + N++ L N+D I + ++ V A L GLPS Sbjct: 21 VDLYSGLSEDEANQMLALLMLRNVDAEKKIIKEGNVTVRVEKEQFTDAVEVLRQHGLPSK 80 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 + + +LF + ++ E + + ++ + G+++A+V I + R Sbjct: 81 RTETMADLFPSGQ-LVTSPAQEQAKIGYLKEQLLEKMLRGMDGVISAQVSIA-ESVSQNR 138 Query: 166 KIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVTVL 210 + P+ASV I+ +S E I+ L+ VPNL +++V+ Sbjct: 139 REAPAPSASVFIKYSPGINMQSRETDIKRLIHTGVPNLRSENISVV 184 >gi|238918870|ref|YP_002932384.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family, [Edwardsiella ictaluri 93-146] gi|84663079|gb|ABC60061.1| EsaJ [Edwardsiella ictaluri 93-146] gi|238868438|gb|ACR68149.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family, putative [Edwardsiella ictaluri 93-146] Length = 243 Score = 98.9 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 68/187 (36%), Gaps = 7/187 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMV 90 I+LF LY KL+ + N++ L I R+ +G ++ V Sbjct: 7 ILLFSMLPLLSGCKS--ELYSKLDEKEANQMMALLIYNKIPADKRMEKDGVTLLVDQDRF 64 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A L GLP + + ELF + +E +I + + S+ G++ Sbjct: 65 VDAVEVLRQNGLPRPQTVTMQELFPSGQ-LVTSPEQEEAKLNYLKSQQIEKMLSSMDGVI 123 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVTV 209 A V + + +A+V I+ + EA IR L+ +P L ++V Sbjct: 124 NAEVSVA-EPRAIVGEAPPLASAAVFIKYSPDVNLPAREAEIRALINNGIPGLAPDRISV 182 Query: 210 LDSTGKL 216 + Sbjct: 183 TLQRAEY 189 >gi|291484173|dbj|BAI85248.1| hypothetical protein BSNT_02644 [Bacillus subtilis subsp. natto BEST195] Length = 323 Score = 98.6 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 51/363 (14%), Positives = 121/363 (33%), Gaps = 59/363 (16%) Query: 210 LDSTGKLLTANEMERNILGKSLSIVQ----AIQHEIEMNINKALAAFLGVDNFRSAVVAE 265 +D ++ + S S Q ++ +I+ ++ L +G D +V A+ Sbjct: 1 MDQNSTYYDKSDSDAGSYADSYSSQQGIKSQVEKDIQKHVQSLLGTMMGQDKVVVSVTAD 60 Query: 266 LNMDTQQIREIVYDP------DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRK 319 ++ + E + +P + + ++S+ Q + +A T E+++ + Sbjct: 61 IDFTKENRTEDIVEPVDKENMEGIAVSAEKVSETYQGDGAANGGTAGTGEEDVTNYKADG 120 Query: 320 VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQG 379 N +K + NYE+N YK+ L I V+V S + Sbjct: 121 ENTESG--NYEKNSNKINYEVNRIHKEIAESPYKVRDLGIQVMVEPPDAKNTASLSTE-- 176 Query: 380 KIDSYLAEINKIVSAATGINSRRGDTIT---------ITSMDFLENQLFNSGTVQVSFMD 430 + D ++ +V + + + ++ ++ F ++ T + S + Sbjct: 177 RQDEIQKILSTVVRTSLDKDETQNQNLSDADINNKIVVSVQPFDGKVNLDTNTEKSSGIP 236 Query: 431 ILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVT 490 + + V+ A + ++ +L+ Sbjct: 237 LWAYIVGGVLIAAIIVLIIMLI-------------------------RKKRAQEDEFEEY 271 Query: 491 TGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 +P + I L N++ + +++ +L M + E FAK+LR W Sbjct: 272 EYEVPQEPINLPDINEEENETAESVR-----------RKQLEKMAKDKPEDFAKLLRSWL 320 Query: 551 RSE 553 + Sbjct: 321 AED 323 >gi|269138213|ref|YP_003294913.1| putative type III secretion system apparatus lipoprotein [Edwardsiella tarda EIB202] gi|61743038|gb|AAX55258.1| EsaJ [Edwardsiella tarda] gi|62199640|gb|AAX76915.1| EsaJ [Edwardsiella tarda] gi|267983873|gb|ACY83702.1| putative type III secretion system apparatus lipoprotein [Edwardsiella tarda EIB202] gi|304558256|gb|ADM40920.1| EsaJ [Edwardsiella tarda FL6-60] Length = 243 Score = 98.2 bits (243), Expect = 3e-18, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 69/187 (36%), Gaps = 7/187 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMV 90 I++F LY KL+ + N++ L NI R+ G ++ V Sbjct: 7 ILIFGLLPLLSGCKS--ELYSKLDEKEANQMMALLIYNNIPADKRVEKEGVTLLVERERF 64 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A L GLP + + ELF + +E +I + + S+ G++ Sbjct: 65 VDAVEVLRQNGLPRRKTVTMQELFPSGQ-LVTSPEQEEAKLNYLKSQQIEKMLGSMDGVI 123 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVTV 209 A V + + + +A+V I+ + EA IR L+ +P L ++V Sbjct: 124 NAEVSVA-EPRVIVGEAPPQASAAVFIKYSPEINLPAREAEIRALIHNGIPGLAPDRISV 182 Query: 210 LDSTGKL 216 + Sbjct: 183 TLQRAEY 189 >gi|269967253|ref|ZP_06181317.1| putative type III secretion lipoprotein [Vibrio alginolyticus 40B] gi|269828109|gb|EEZ82379.1| putative type III secretion lipoprotein [Vibrio alginolyticus 40B] Length = 237 Score = 98.2 bits (243), Expect = 3e-18, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 68/167 (40%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRIS---DNGSSISVPSSMVGKARIHLAAQGLPSS 105 LY + + N + L + DN + V SS + A L +G P Sbjct: 11 TELYTNVTQKEGNEMLSILLSEGVVATKEPDKDNTVKLMVDSSQIAFAVDALKRKGYPRE 70 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS-F 164 ++ E+F K + + + V A E++ T+ I G++ ARVH+V+ D Sbjct: 71 QFSTLKEVFPKDD-LISSPLAERARLVYAKSQELSSTLSQIDGVLVARVHVVLEDQDLRP 129 Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 + +ASV I+ S I+ LV ++ L+ ++V+ Sbjct: 130 GERPTPASASVFIKHAADIALDSYVPQIKLLVNNSIEGLNYDRISVV 176 >gi|163802017|ref|ZP_02195913.1| putative type III secretion lipoprotein [Vibrio sp. AND4] gi|159174158|gb|EDP58966.1| putative type III secretion lipoprotein [Vibrio sp. AND4] Length = 247 Score = 98.2 bits (243), Expect = 3e-18, Method: Composition-based stats. Identities = 41/210 (19%), Positives = 83/210 (39%), Gaps = 13/210 (6%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRIS---DNGSSISVPSSMVGKARIHLAAQGLPSS 105 LY ++ + N + L + DN + V ++ + A L G P Sbjct: 21 TELYTGVDQQEGNEMLSILLSEGVVATKEPDKDNTVKLLVDNAQIAFAVDALKRNGYPKE 80 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS-F 164 ++ E+F K + + + + A E++ T+ I G++ ARVH+V+ D Sbjct: 81 QFSTLKEVFPKDD-LISSPLAERARLIYAKSQELSSTLSQIDGVLVARVHVVLEDQNLRP 139 Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME 223 + +ASV I+ + I+ LV ++ L+ ++V+ ++ ++E Sbjct: 140 GERPTPASASVFIKHAADVALDAYVPQIKLLVNHSIEGLNYDRISVV-----MVPSSEAR 194 Query: 224 RNILGKSLSIVQAIQHEIEMNINKALAAFL 253 G + +IQ + + L A L Sbjct: 195 ITSQGSQFESILSIQ--VTKDTASHLIAIL 222 >gi|86157134|ref|YP_463919.1| secretory protein YscJ/FliF [Anaeromyxobacter dehalogenans 2CP-C] gi|85773645|gb|ABC80482.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Anaeromyxobacter dehalogenans 2CP-C] Length = 239 Score = 98.2 bits (243), Expect = 4e-18, Method: Composition-based stats. Identities = 51/171 (29%), Positives = 79/171 (46%), Gaps = 10/171 (5%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRIS-----DNGSSISVPSSMVGKARIHLAAQGLP 103 + L L+ N + VAL E I + D G + V + +AR LA + LP Sbjct: 20 EALLHGLDEPQANDVLVALDEGGIAAEKAREDGADGGWEVRVAPADAARARRVLAERDLP 79 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 +G++ S T+ + + AL GE+AR+I++I G+V ARVH+ +P Sbjct: 80 RQ-RPAGFDAVLAKGSMVPTATEEHAMYLHALSGELARSIEAIDGVVGARVHLGLPQADP 138 Query: 164 FRKIGAR-PTASVMIRAINPSVYKSA---EAIRHLVAAAVPNLDMGDVTVL 210 FR P A+V++R + +R LVA A LD G V+V+ Sbjct: 139 FRPGERPAPRAAVLVRCRAAACAAVRALEPGLRALVAGAADGLDAGAVSVV 189 >gi|153832501|ref|ZP_01985168.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio harveyi HY01] gi|156973996|ref|YP_001444903.1| hypothetical protein VIBHAR_01707 [Vibrio harveyi ATCC BAA-1116] gi|148871296|gb|EDL70168.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio harveyi HY01] gi|156525590|gb|ABU70676.1| hypothetical protein VIBHAR_01707 [Vibrio harveyi ATCC BAA-1116] Length = 252 Score = 97.8 bits (242), Expect = 5e-18, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 68/167 (40%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRIS---DNGSSISVPSSMVGKARIHLAAQGLPSS 105 LY + + N + L + DN + V ++ + A L +G P Sbjct: 26 TELYTGVSQKEGNEMLSILLSEGVVATKEPDKDNTVKLMVDNAQIAFAVDALKRKGYPRE 85 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS-F 164 ++ E+F K + + + + A E++ T+ I G++ ARVH+V+ D Sbjct: 86 QFSTLKEVFPKDD-LISSPLAERARLIYAKSQELSSTLSQIDGVLVARVHVVLEDQNLRP 144 Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 + +ASV I+ S I+ LV ++ L+ ++V+ Sbjct: 145 GERPTPASASVFIKHAADVALDSYVPQIKLLVNNSIEGLNYDRISVV 191 >gi|222082184|ref|YP_002541549.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Agrobacterium radiobacter K84] gi|221726863|gb|ACM29952.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Agrobacterium radiobacter K84] Length = 274 Score = 97.4 bits (241), Expect = 5e-18, Method: Composition-based stats. Identities = 45/185 (24%), Positives = 80/185 (43%), Gaps = 6/185 (3%) Query: 30 LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVP 86 + I+ + F+++ D L L+ D V L A I ++ I+V Sbjct: 21 VAGILSVLVCAAFLSACSEDVL-TGLDQRDARDAQVLLERAGIRATVTGEKGDVFKIAVD 79 Query: 87 SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146 + +A L+ GLP + ELF F +T Q+ A+E ++ T+ ++ Sbjct: 80 ETDHARAIELLSDAGLPRLPHRTMAELFPGD-GFLVTPLEQKARMTYAVEQQLGETLSAL 138 Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAI-RHLVAAAVPNLDMG 205 G+ +ARVHIV+P+ I + AS +++ + E R L+ +V L Sbjct: 139 DGVASARVHIVLPEDNGRGLIKEKARASALLQYRPSANLVDIEMKSRSLLLNSVRGLAYE 198 Query: 206 DVTVL 210 DV+V+ Sbjct: 199 DVSVV 203 >gi|312883870|ref|ZP_07743587.1| hypothetical protein VIBC2010_01268 [Vibrio caribbenthicus ATCC BAA-2122] gi|309368328|gb|EFP95863.1| hypothetical protein VIBC2010_01268 [Vibrio caribbenthicus ATCC BAA-2122] Length = 247 Score = 97.4 bits (241), Expect = 6e-18, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 68/165 (41%), Gaps = 6/165 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRIS---DNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 LY ++ + N + L + DN + V ++ + A L G P Sbjct: 23 LYTGVDQKEGNEMLSILLSEGVVASKEPDKDNTVKLMVDNAQIAFAVDVLKRNGYPREQF 82 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS-FRK 166 ++ ++F K + + + + A E++ T+ I G++ ARVH+V+ + + Sbjct: 83 STLKDVFPKDD-LISSPLAERARLIYAKSQELSATLSQIDGVLVARVHVVLEEEELRPGE 141 Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 +ASV I+ S I+ LV ++ L+ ++V+ Sbjct: 142 RPTPASASVFIKHAADIALDSYVPQIKLLVNNSIEGLNYDRISVV 186 >gi|317486819|ref|ZP_07945635.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Bilophila wadsworthia 3_1_6] gi|316921982|gb|EFV43252.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Bilophila wadsworthia 3_1_6] Length = 269 Score = 97.0 bits (240), Expect = 7e-18, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 71/166 (42%), Gaps = 5/166 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGLPSS 105 +Y L + VN + L + I + G ++SV + ++ L LP + Sbjct: 32 VEVYRGLTEAQVNTMLSTLLKRGIRAEKTAAGKAGFTLSVDEDQLVQSLEILKENNLPRA 91 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 + ++F ++ ++ A+ E++ T I G++ ARVH+V+ Sbjct: 92 DYENLGKVF-SGQGMISSASEEQARMAYAISQELSDTFSRIDGVLTARVHVVLGGTDQAT 150 Query: 166 KIGARPTASVMIRAINPS-VYKSAEAIRHLVAAAVPNLDMGDVTVL 210 P+A+V +R S V IR L + AVP+LD V+V+ Sbjct: 151 DTRTLPSAAVFLRHTPDSPVVNLVAKIRELTSKAVPDLDYERVSVM 196 >gi|269105034|ref|ZP_06157729.1| type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ PscJ) [Photobacterium damselae subsp. damselae CIP 102761] gi|268160669|gb|EEZ39167.1| type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ PscJ) [Photobacterium damselae subsp. damselae CIP 102761] Length = 265 Score = 96.6 bits (239), Expect = 9e-18, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 68/165 (41%), Gaps = 6/165 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRIS---DNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 LY + + N + L + DN + V ++ + A L +G P Sbjct: 41 LYTGVSQKEGNEMLSVLLSEGVVATKEPDKDNTVKLMVDNAQIAFAIDALKRKGYPREQF 100 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS-FRK 166 ++ E+F K + + + + A E++ T+ I G++ ARVH+V+ D + Sbjct: 101 STLKEVFPKDD-LISSPLAERARLIYAKSQELSATLSQIDGVLVARVHVVLKDQNLRPGE 159 Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 +ASV I+ S I+ LV ++ L+ ++V+ Sbjct: 160 RPTPASASVFIKHAADVALDSYVPQIKLLVNNSIEGLNYDRISVV 204 >gi|126174186|ref|YP_001050335.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Shewanella baltica OS155] gi|125997391|gb|ABN61466.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Shewanella baltica OS155] Length = 239 Score = 96.6 bits (239), Expect = 9e-18, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 69/166 (41%), Gaps = 6/166 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDNGSS----ISVPSSMVGKARIHLAAQGLPS 104 +LY L + N++ L +ID + S + + A L G P Sbjct: 20 VDLYRDLPQDEANQMVALLMLNHIDASAEADQKSGNVSLKIEKDQFINAVELLRQNGFPK 79 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + +LF + +E E ++ RT+ S+ G+++ARV I P + Sbjct: 80 PHYANIEDLFPSGQ-LVTSPAQEEAKMGYLKEQQLERTLSSMDGVISARVSIAEPAPDTG 138 Query: 165 RKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209 R++ +ASV I+ + + E I+ LV AVP L +++V Sbjct: 139 RQLAQTKSASVYIKYSPQANLTNTENQIKSLVQNAVPGLSYDNISV 184 >gi|73532528|dbj|BAE19822.1| flagellar M-ring protein [Edwardsiella tarda] Length = 125 Score = 96.6 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 6/121 (4%) Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 D RS +S+ S +++E +NYE++ T Sbjct: 2 DKPRSAXGTAGRNTPTPSRSSAISNN--GRLTSRNENIRRDETTNYEVDRTIRHTQARAG 59 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 +ERLS+AVVVN T + + +IN +V A G + RGDT+++ + Sbjct: 60 NIERLSVAVVVNYATDTNGK----EIALSQEKMDQINNLVREAMGFSQSRGDTLSVVNTP 115 Query: 413 F 413 F Sbjct: 116 F 116 >gi|160875378|ref|YP_001554694.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Shewanella baltica OS195] gi|160860900|gb|ABX49434.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Shewanella baltica OS195] gi|315267578|gb|ADT94431.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Shewanella baltica OS678] Length = 239 Score = 96.6 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 6/166 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDNGSS----ISVPSSMVGKARIHLAAQGLPS 104 +LY L + N++ L +ID + S + + A L G P Sbjct: 20 VDLYRDLPQDEANQMVALLMLNHIDASAEADQKSGNVSLKIDKDQFINAVELLRQNGFPK 79 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + +LF + +E E ++ RT+ S+ G+++ARV I P S Sbjct: 80 PHYANIEDLFPSGQ-LVTSPAQEEAKMGYLKEQQLERTLSSMDGVISARVSIAEPAPDSG 138 Query: 165 RKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209 R+I +ASV I+ + + E I+ LV AVP L +++V Sbjct: 139 RQIALTKSASVYIKYSPQANLTNTENQIKSLVQNAVPGLSYDNISV 184 >gi|218681694|ref|ZP_03529495.1| nodulation protein [Rhizobium etli CIAT 894] Length = 268 Score = 96.2 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 45/181 (24%), Positives = 82/181 (45%), Gaps = 6/181 (3%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI-SDNGSSISVPSSMVGK 92 +A F+ + D L L+ D V L A I + S+ G + ++ + Sbjct: 25 AAMLALCLFLAACSQDVL-TGLDQRDALDAQVLLERAGISVTMKSEKGGTYAIAAETADH 83 Query: 93 ARI--HLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 AR LA GLP S + ELF N F +T + Q+ A+E ++A T+ + G+ Sbjct: 84 ARAIELLAGAGLPRQSFGNVAELFPG-NGFLVTPYEQKARMSYAIEQQLAETLSGLDGVA 142 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAI-RHLVAAAVPNLDMGDVTV 209 ARVH+V+P+ I + A+ +++ + + R ++ ++ +L DV+V Sbjct: 143 TARVHVVLPEENGRGLIKEKARAAAVLQYRPGANLNEIDMKSRSVLVNSIRDLSYEDVSV 202 Query: 210 L 210 + Sbjct: 203 V 203 >gi|194350707|gb|ACF53784.1| HrcJ [Pectobacterium carotovorum subsp. carotovorum] Length = 146 Score = 96.2 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 4/147 (2%) Query: 59 DVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 D N L I R+ G ++ + + + +A L A GLP S + E+F K Sbjct: 1 DANEAISMLGRYQIGAEKRVDKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK 60 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 + T + + AL E+ T+ I G++ ARVH+V+P+ + + +A+V Sbjct: 61 -SGVISTPLEERARYIYALSQEVEATLAQIDGVLVARVHVVLPERIAPGEPVQPASAAVF 119 Query: 177 IRAINPSVYKSAEA-IRHLVAAAVPNL 202 I+ E IR +VA+++P L Sbjct: 120 IKYRAELEPDGMEQRIRRMVASSIPGL 146 >gi|194350701|gb|ACF53781.1| HrcJ [Brenneria nigrifluens] gi|194350703|gb|ACF53782.1| HrcJ [Brenneria nigrifluens] gi|194350705|gb|ACF53783.1| HrcJ [Brenneria alni] Length = 146 Score = 96.2 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 4/147 (2%) Query: 59 DVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 D N L I R+ G ++ + + + +A L A GLP S + E+F K Sbjct: 1 DANEAISMLGRYQIGAEKRVDKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK 60 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 + T + + AL E+ T+ I G++ ARVH+V+P+ + + +A+V Sbjct: 61 -SGVISTPLEERARYIYALSQEVEATLAQIDGVLVARVHVVLPERIAPGEPVQPASAAVF 119 Query: 177 IRAINPSVYKSAE-AIRHLVAAAVPNL 202 I+ E IR +VA+++P L Sbjct: 120 IKYRAELEPDGMEPRIRRMVASSIPGL 146 >gi|89255318|ref|NP_659983.2| nodulation protein [Rhizobium etli CFN 42] gi|89213272|gb|AAM54996.2| nodulation protein [Rhizobium etli CFN 42] Length = 273 Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 45/181 (24%), Positives = 82/181 (45%), Gaps = 6/181 (3%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI-SDNGSSISVPSSMVGK 92 +A F+ + D L L+ D V L A I + S+ G + ++ + Sbjct: 22 AAMLAFCLFLAACSQDVL-TGLDQRDALDAQVLLERAGISVTMRSEKGGTYAIAAESADH 80 Query: 93 ARI--HLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 AR LA GLP S + ELF N F +T + Q+ A+E ++A T+ + G+ Sbjct: 81 ARAIELLAGAGLPRQSFGNVAELFPG-NGFLVTPYEQKARMSYAIEQQLAETLSGLDGVA 139 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAI-RHLVAAAVPNLDMGDVTV 209 ARVH+V+P+ I + A+ +++ + + R ++ ++ +L DV+V Sbjct: 140 TARVHVVLPEENGRGLIKEKARAAAVLQYRPGANLNEIDMKSRSVLVNSIRDLSYEDVSV 199 Query: 210 L 210 + Sbjct: 200 V 200 >gi|327192836|gb|EGE59762.1| nodulation protein [Rhizobium etli CNPAF512] Length = 250 Score = 95.9 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 6/179 (3%) Query: 36 FMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI-SDNGSSISVPSSMVGKAR 94 +A F+ + D L L+ D V L A I + S+ G + ++ + AR Sbjct: 1 MLAFCLFLAACSQDVL-TGLDQRDALDAQVLLERAGISVTMRSEKGGTYAIAAESADHAR 59 Query: 95 I--HLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 LA GLP S + ELF N F +T + Q+ A+E ++A T+ + G+ A Sbjct: 60 AIELLAGAGLPRQSFGNVAELFPG-NGFLVTPYEQKARMSYAIEQQLAETLSGLDGVATA 118 Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAI-RHLVAAAVPNLDMGDVTVL 210 RVH+V+P+ I + A+ +++ + + R ++ ++ +L DV+V+ Sbjct: 119 RVHVVLPEENGRGLIKEKAKAAAVLQYRPGANLNEIDMKSRSVLVNSIRDLSYEDVSVV 177 >gi|194350717|gb|ACF53789.1| HrcJ [Pectobacterium carotovorum subsp. odoriferum] Length = 146 Score = 95.5 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 4/147 (2%) Query: 59 DVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 D N L I R+ G ++ + + + +A L A GLP S + E+F K Sbjct: 1 DANEAISMLGRYQIGAEKRVEKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK 60 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 + T + + AL E+ T+ I G++ ARVH+V+P+ + + +A+V Sbjct: 61 -SGVISTPLEERARYIYALSQEVEATLAQIDGVMVARVHVVLPERIAPGEPVQPASAAVF 119 Query: 177 IRAINPSVYKSAE-AIRHLVAAAVPNL 202 I+ E IR +VA+++P L Sbjct: 120 IKYRAELEPDGMEPRIRRMVASSIPGL 146 >gi|218508171|ref|ZP_03506049.1| flagellar MS-ring protein [Rhizobium etli Brasil 5] Length = 92 Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 49/93 (52%), Positives = 70/93 (75%), Gaps = 1/93 (1%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 +IL V + I + +AA FVN P + LYV L+ D+N+IS+AL+EANI+F++ +G+S Sbjct: 1 MILGGVGALSIAIILAAALFVNKPAQETLYVGLDAPDLNQISMALAEANINFQVGTDGAS 60 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115 ISVP+ M GKAR+ LA +GLP +S+N+GYELFD Sbjct: 61 ISVPAGMTGKARLMLAERGLP-NSANAGYELFD 92 >gi|194350689|gb|ACF53775.1| HrcJ [Erwinia rhapontici] Length = 146 Score = 95.1 bits (235), Expect = 3e-17, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 4/147 (2%) Query: 59 DVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 D N L I R+ G ++ + + + +A L A GLP S + E+F + Sbjct: 1 DANEAISMLGRYQIGAEKRVEKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVF-Q 59 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 + T + + AL E+ T+ I G++ ARVH+V+P+ + + +A+V Sbjct: 60 RSGVISTPLEERARYIYALSQEVEATLAQIDGVMVARVHVVLPERIAPGEPVQPASAAVF 119 Query: 177 IRAINPSVYKSAE-AIRHLVAAAVPNL 202 I+ E IR +VA+++P L Sbjct: 120 IKYRAELEPDGMEPRIRRMVASSIPGL 146 >gi|190894055|ref|YP_001984349.1| nodulation protein [Rhizobium etli CIAT 652] gi|190699716|gb|ACE93799.1| nodulation protein [Rhizobium etli CIAT 652] Length = 273 Score = 95.1 bits (235), Expect = 3e-17, Method: Composition-based stats. Identities = 43/181 (23%), Positives = 79/181 (43%), Gaps = 6/181 (3%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMV 90 +A F+ + D L L+ D V L A I + +I+ ++ Sbjct: 22 AAMLALCLFLAACSQDVL-TGLDQRDALDAQVLLERAGISVTMKSEKGGTYAITAETADH 80 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 +A LA GLP S + ELF N F +T + Q+ A E ++A T+ + G+ Sbjct: 81 ARAIELLAGAGLPRQSFGNVAELFPG-NGFLVTPYEQKARMSYATEQQLAETLSGLDGVA 139 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAI-RHLVAAAVPNLDMGDVTV 209 ARVH+V+P+ I + A+ +++ + + R ++ ++ +L DV+V Sbjct: 140 TARVHVVLPEENGRGLIKEKARAAAVLQYRPGANLNEIDMKSRSVLVNSIRDLSYEDVSV 199 Query: 210 L 210 + Sbjct: 200 V 200 >gi|304408569|ref|ZP_07390190.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Shewanella baltica OS183] gi|307305397|ref|ZP_07585145.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Shewanella baltica BA175] gi|304352390|gb|EFM16787.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Shewanella baltica OS183] gi|306911700|gb|EFN42125.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Shewanella baltica BA175] Length = 239 Score = 94.7 bits (234), Expect = 4e-17, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 68/166 (40%), Gaps = 6/166 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDNGSS----ISVPSSMVGKARIHLAAQGLPS 104 +LY L + N++ L +ID + S + + A L G P Sbjct: 20 VDLYRDLPQDEANQMVALLMLNHIDASAEADQKSGNVSLKIEKDQFINAVELLRQNGFPK 79 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + +LF + +E E ++ RT+ S+ G+++A V I P + Sbjct: 80 PHYANIEDLFPSGQ-LVTSPAQEEAKMGYLKEQQLERTLSSMDGVISASVSIAEPAPDTG 138 Query: 165 RKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209 R++ +ASV I+ + + E I+ LV AVP L +++V Sbjct: 139 RQLAQTKSASVYIKYSPQANLTNTENQIKSLVQNAVPGLSYDNISV 184 >gi|312881276|ref|ZP_07741074.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Vibrio caribbenthicus ATCC BAA-2122] gi|309371168|gb|EFP98622.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Vibrio caribbenthicus ATCC BAA-2122] Length = 240 Score = 94.7 bits (234), Expect = 4e-17, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 70/166 (42%), Gaps = 8/166 (4%) Query: 51 LYVKLEVSDVNRISVALSEANIDF--RISDNGS--SISVPSSMVGKARIHLAAQGLPSSS 106 LY L ++ N++ L +ID + ++ + A L G P + Sbjct: 22 LYQNLPQAEANQMVALLMLNHIDASSEMDAKTGKVTLKIEKDQFINAVELLRQNGYPKAE 81 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 G E + +E E ++ RT+ ++ G+++ARV I D + Sbjct: 82 Y-VGIEQLFPSGQLVSSPAQEEAKMSYLKEQQLERTLSNMDGVISARVSIAQNDSSASSS 140 Query: 167 IG--ARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVTV 209 + +ASV I+ + ++E+ IR+L+ AVP+L ++++ Sbjct: 141 HQTPDQKSASVYIKYSPEANLGNSESQIRNLIKNAVPDLSYENISL 186 >gi|167567520|ref|ZP_02360436.1| type III secretion system apparatus lipoprotein [Burkholderia oklahomensis EO147] Length = 224 Score = 93.9 bits (232), Expect = 6e-17, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 69/164 (42%), Gaps = 6/164 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 LY L ++ N++ L +I + D +I V S A + GLP Sbjct: 25 LYTNLPEAEANQMIALLMLRDIAVDKKPLKDGNVTIRVESDQFVNAVELMRQNGLPRRKL 84 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 + +LF + ++ E ++ + ++++ G+V A+V I + + R+ Sbjct: 85 AALEDLFPPGQ-LVTSPAQEQAKITFLKEQQLEKMLRAMDGVVDAQVSIAEAEPQN-RRD 142 Query: 168 GARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVTVL 210 +P+ASV ++ + + E IR LV P L V+V+ Sbjct: 143 PPQPSASVFVKYSPERNFGARETEIRSLVVTGTPGLSPDHVSVV 186 >gi|325109012|ref|YP_004270080.1| secretory protein YscJ/FliF family protein [Planctomyces brasiliensis DSM 5305] gi|324969280|gb|ADY60058.1| secretory protein YscJ/FliF family protein [Planctomyces brasiliensis DSM 5305] Length = 540 Score = 93.9 bits (232), Expect = 7e-17, Method: Composition-based stats. Identities = 101/586 (17%), Positives = 182/586 (31%), Gaps = 82/586 (13%) Query: 1 MAILDQ-LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLE-- 56 M I Q QF + ++ ++ +LA+V ++ + F + Y + V Sbjct: 1 MDIFKQTFTQFRELFLAMPASQRAMLATVTVLLLGGFGYLMYRGTGNGGYVPVSVGKSFR 60 Query: 57 VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG-LPSSSSNSGYELFD 115 V ++ R L + G + VPSS V + L A G LP + + + + Sbjct: 61 VEELIRAEETLLQNGYT-DFERRGQRLLVPSSKVEEYNAALLAAGSLPQNWAEEWEKQYS 119 Query: 116 KVNSFGLTSFMQEITRVRALEGEIART------IQSISGIVAARVHIVMPDMGSFRKIGA 169 + F M E EIAR + ++ I A V + + Sbjct: 120 DIGPFANNKQMDERK-------EIARAKLASQMLLALPDIEYANVVWDQEEKARW-PKQP 171 Query: 170 RPTASVMIRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLD-STGKLLTANEMERNI 226 R TA+V ++ A+R +A NL DVTVLD G + Sbjct: 172 RSTATVSVQPRANKQLDETLVHAVRVSIAGMKANLSAEDVTVLDLGRGIAYQQADDNDPF 231 Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR-EIVYDPDSKVE 285 + L +Q ++ + L A +D+ R AV +++ IR + Sbjct: 232 NDRLLQRIQQLKDMYRDEV---LTAIDYIDSVRVAVKVDIDKVKSAIRRSQSVETTGTTL 288 Query: 286 RSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSI 345 SI S S Q N P + +S ++T+ KE + + Sbjct: 289 VSINES-SKHNSNRFQTAKEPGQNANGPMNLAGQQTPTQSADSTETKESSLT-APSFQVT 346 Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA---------- 395 E +S++VV+ + V +S Q D+ +I V Sbjct: 347 QEDVAGALPENVSVSVVIPEQYYRTVALQSG-QVAPDATEEDIRAAVQKVRPDVDDAVKA 405 Query: 396 ---------TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFL 446 G N D I + + + V + + LS +A+ Sbjct: 406 RVAKIIPIPVGQNVD--DYIDVGAF---IPSPTSETIVSIPWTQTLSYWITQWGSAVGLG 460 Query: 447 VGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQ 506 + L ++ +R + + + LMP + Sbjct: 461 IFALWAFWMLNKTVR--SQTETEIPEPEPEQVEEAKSEEEEFSDEDLMPQGD-------- 510 Query: 507 DIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 + L ++++ N E A I+ W + Sbjct: 511 ------------------TKRVDHLQYLVKKNPEMTASIISNWIQE 538 >gi|1772456|dbj|BAA14027.1| FliF [Shigella boydii] Length = 220 Score = 93.2 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 35/202 (17%), Positives = 80/202 (39%), Gaps = 23/202 (11%) Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 ++RLS+AVVVN L + + + +I + A G + +RGD++ + + F Sbjct: 42 VQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 97 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 + + ++ F + ++ A +L+ L+ L A+R A+ + Sbjct: 98 NSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRR-AEAMK 152 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 + + + AV L ++ + +NQ + + + R+ Sbjct: 153 AVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQRLGTEVMS--------------QRIRE 198 Query: 534 MIEINEERFAKILRKWARSEIE 555 M + + A ++R+W ++ E Sbjct: 199 MSDNDPRVVALVIRQWINNDHE 220 >gi|218458744|ref|ZP_03498835.1| nodulation protein [Rhizobium etli Kim 5] Length = 246 Score = 93.2 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 75/162 (46%), Gaps = 5/162 (3%) Query: 53 VKLEVSDVNRISVALSEANIDFRI-SDNGSSISVPSSMVGKARI--HLAAQGLPSSSSNS 109 L+ D V L A I + S+ G + ++ + AR LA GLP S + Sbjct: 13 TGLDQRDALDAQVLLERAGISVTMRSEKGGTYAIAAESADHARAIELLAGAGLPRQSFEN 72 Query: 110 GYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA 169 ELF N F +T + Q+ A+E ++A T+ + G+ ARVH+V+P+ I Sbjct: 73 VAELFPG-NGFLVTPYEQKARMSYAIEQQLAETLSGLDGVATARVHVVLPEENGRGLIKE 131 Query: 170 RPTASVMIRAINPSVYKSAEAI-RHLVAAAVPNLDMGDVTVL 210 + A+ +++ + + R ++ ++ +L DV+V+ Sbjct: 132 KARAAAVLQYRPGANLNEIDMKSRSVLVNSIRDLSYEDVSVV 173 >gi|167574399|ref|ZP_02367273.1| type III secretion system apparatus lipoprotein [Burkholderia oklahomensis C6786] Length = 249 Score = 92.8 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 69/164 (42%), Gaps = 6/164 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 LY L ++ N++ L +I + D +I V S A + GLP Sbjct: 25 LYTNLPEAEANQMIALLMLRDIAVDKKPLKDGNVTIRVESDQFVNAVELMRQNGLPRRKL 84 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 + +LF + ++ E ++ + ++++ G+V A+V I + + R+ Sbjct: 85 AALEDLFPPGQ-LVTSPAQEQAKITFLKEQQLEKMLRAMDGVVDAQVSIAEAEPQN-RRD 142 Query: 168 GARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVTVL 210 +P+ASV ++ + + E IR LV P L V+V+ Sbjct: 143 PPQPSASVFVKYSPERNFGARETEIRSLVVTGTPGLSPDHVSVV 186 >gi|238752365|ref|ZP_04613843.1| Type III secretion system apparatus lipoprotein [Yersinia rohdei ATCC 43380] gi|238709406|gb|EEQ01646.1| Type III secretion system apparatus lipoprotein [Yersinia rohdei ATCC 43380] Length = 236 Score = 92.4 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 65/188 (34%), Gaps = 6/188 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDN-GSSI--SVPSSMVGKARIHLAAQGLPSSSS 107 LY L + N++ L I G ++ SV S A L G P Sbjct: 17 LYSGLSEEEANQMLALLMLHQIKAEKQAEKGGTVGLSVDKSQFINAVELLRQNGFPRQKF 76 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 + ELF + ++ V E ++ + + G++ A V I MP K Sbjct: 77 ATVDELFPSNQ-LVTSPGQEQAKMVYLKEQQLESMLSHMDGVIRANVSIAMPAPTD-GKN 134 Query: 168 GARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI 226 ASV I+ S + I++L+ +P ++ ++V+ + + Sbjct: 135 SVPNAASVFIKYSPEVNLLSYQTQIKNLIHDGIPGINYSQISVVMQSANFRFSATTATTQ 194 Query: 227 LGKSLSIV 234 S+ Sbjct: 195 SRSQASVQ 202 >gi|260778625|ref|ZP_05887517.1| type III secretion apparatus lipoprotein YscJ/HrcJ family [Vibrio coralliilyticus ATCC BAA-450] gi|260604789|gb|EEX31084.1| type III secretion apparatus lipoprotein YscJ/HrcJ family [Vibrio coralliilyticus ATCC BAA-450] Length = 242 Score = 92.0 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 70/168 (41%), Gaps = 8/168 (4%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDNGSS----ISVPSSMVGKARIHLAAQGLPS 104 LY L S+ N++ L +ID + + + + A L G P Sbjct: 20 VELYQNLPQSEANQMVALLMLNHIDASSETDAKTGKVTLKIEKDQFINAVELLRQNGYPK 79 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + G E + ++ E ++ RT+ S+ G+++ARV I D + Sbjct: 80 AEY-VGIEQLFPSGQLVSSPAQEDAKMSYLKEQQLERTLSSMDGVISARVSIAQSDKSTN 138 Query: 165 RKIGARP--TASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVTV 209 A +A+V I+ + ++E+ IR+L+ AVP+L ++++ Sbjct: 139 TGRAAPSEKSAAVYIKYSPEANLGNSESQIRNLIKNAVPDLQYENISL 186 >gi|194350681|gb|ACF53771.1| HrcJ [Erwinia amylovora] Length = 120 Score = 92.0 bits (227), Expect = 3e-16, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 2/121 (1%) Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 + V ++ + +A L A GLP + + E+F K N T + + AL E+ T Sbjct: 1 VLVDAAELNRAVHILDAAGLPRPARTNLGEVFQK-NGVISTPLEERARYIYALSQEVEST 59 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPN 201 + I G++ ARVH+V+P+ + + +A+V I+ E IR +VA+++P Sbjct: 60 LSQIDGVIVARVHVVLPERIAPGEPVQPASAAVFIKYRPDLDPDVIEPRIRRMVASSLPG 119 Query: 202 L 202 L Sbjct: 120 L 120 >gi|194350687|gb|ACF53774.1| HrcJ [Erwinia rhapontici] Length = 144 Score = 91.6 bits (226), Expect = 3e-16, Method: Composition-based stats. Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 2/129 (1%) Query: 75 RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134 R+ G ++ + + + +A L A GLP S + E+F K + T + + A Sbjct: 17 RVEKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK-SGVISTPLEERARYIYA 75 Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRH 193 L E+ T+ I G++ ARVH+V+P+ + + +A+V I+ E IR Sbjct: 76 LSQEVEATLAQIDGVMVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGMEPRIRR 135 Query: 194 LVAAAVPNL 202 +VA+++P L Sbjct: 136 MVASSIPGL 144 >gi|213613043|ref|ZP_03370869.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 161 Score = 91.6 bits (226), Expect = 3e-16, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 65/177 (36%), Gaps = 19/177 (10%) Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFAT 438 + +I + A G + +RGDT+ + + F ++ ++ F S Sbjct: 4 PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDNTGGELPFWQQQS-FIDQ 59 Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498 ++ A +L+ ++ L A+ ++ + + AV L ++ Sbjct: 60 LLAAGRWLLVLVVAWILWRKAVHPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRLSKDEQ 118 Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + +NQ R+ + V Q R+ M + + A ++R+W ++ E Sbjct: 119 LQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSNDHE 161 >gi|194350709|gb|ACF53785.1| HrcJ [Pectobacterium carotovorum subsp. carotovorum] Length = 143 Score = 91.6 bits (226), Expect = 3e-16, Method: Composition-based stats. Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 2/129 (1%) Query: 75 RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134 R+ G ++ + + + +A L A GLP S + E+F K + T + + A Sbjct: 16 RVDKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK-SGVISTPLEERARYIYA 74 Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRH 193 L E+ T+ I G++ ARVH+V+P+ + + +A+V I+ E IR Sbjct: 75 LSQEVEATLAQIDGVLVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGMEQRIRR 134 Query: 194 LVAAAVPNL 202 +VA+++P L Sbjct: 135 MVASSIPGL 143 >gi|213855154|ref|ZP_03383394.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 160 Score = 91.6 bits (226), Expect = 3e-16, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 65/177 (36%), Gaps = 19/177 (10%) Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFAT 438 + +I + A G + +RGDT+ + + F ++ ++ F S Sbjct: 3 PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDNTGGELPFWQQQS-FIDQ 58 Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498 ++ A +L+ ++ L A+ ++ + + AV L ++ Sbjct: 59 LLAAGRWLLVLVVAWILWRKAVHPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRLSKDEQ 117 Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + +NQ R+ + V Q R+ M + + A ++R+W ++ E Sbjct: 118 LQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSNDHE 160 >gi|194350715|gb|ACF53788.1| HrcJ [Pectobacterium atrosepticum SCRI1043] Length = 133 Score = 91.2 bits (225), Expect = 4e-16, Method: Composition-based stats. Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 2/129 (1%) Query: 75 RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134 R+ G ++ + + + +A L A GLP S + E+F K + T + + A Sbjct: 6 RVDKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK-SGVISTPLEERARYIYA 64 Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRH 193 L E+ T+ I G++ ARVH+V+P+ + + +A+V I+ E IR Sbjct: 65 LSQEVEATLAQIDGVLVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGMEQRIRR 124 Query: 194 LVAAAVPNL 202 +VA+++P L Sbjct: 125 MVASSIPGL 133 >gi|238787467|ref|ZP_04631265.1| Type III secretion system apparatus lipoprotein [Yersinia frederiksenii ATCC 33641] gi|238724254|gb|EEQ15896.1| Type III secretion system apparatus lipoprotein [Yersinia frederiksenii ATCC 33641] Length = 240 Score = 91.2 bits (225), Expect = 4e-16, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 75/219 (34%), Gaps = 18/219 (8%) Query: 20 TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN 79 R++ L ++ +A LY L + N++ L I Sbjct: 2 QRMIALLLIVFSLSGCGIA------------LYSGLSEGEANQMLALLMLHQIKAEKQPE 49 Query: 80 -GSSI--SVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136 G ++ SV S A L G P S ELF + ++ V E Sbjct: 50 KGGTVGLSVDKSQFINAVELLRQHGFPRQRFTSVDELFPPNQ-LVTSPGQEQAKMVYLKE 108 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLV 195 ++ + + G++ A V I MP K ASV I+ S ++ I++L+ Sbjct: 109 QQLESMLSHMDGVIRADVTIAMPAPTD-GKSSVPHAASVFIKYSPEVNLLSYQSQIKNLI 167 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIV 234 +P +D ++V+ + + + S+ Sbjct: 168 RDGIPGIDYSQISVVMQPANYRFSASAPQQPSHAAASLQ 206 >gi|108759625|ref|YP_633790.1| YscJ/FliF family type III secretion lipoprotein [Myxococcus xanthus DK 1622] gi|108463505|gb|ABF88690.1| type III secretion lipoprotein, YscJ/FliF family [Myxococcus xanthus DK 1622] Length = 267 Score = 90.9 bits (224), Expect = 5e-16, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 9/165 (5%) Query: 54 KLEVSDVNRISVALSEANIDFRISDN-----GSSISVPSSMVGKARIHLAAQGLPSSSSN 108 L+ N + L E +D R SI V A L+ GLP Sbjct: 27 GLDERQANELQSVLVERGLDARKVPEAGKKPTWSIEVADEHASDAVRILSELGLPRPKEE 86 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 G ++F T + + RVR +E + +T+QS+ G++ ARVH+V+P + Sbjct: 87 VGCDVFGG-GGLVRTPVEESVCRVRVMERSLEKTLQSVEGVLLARVHLVVPAPPRVGQAP 145 Query: 169 ARPTASVMIRAINP---SVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 AS M+R V +S+E ++ L+A V L V++L Sbjct: 146 GPSKASAMLRVAPGNAARVRQSSETLKVLLAGGVEGLSPEAVSLL 190 >gi|284007036|emb|CBA72311.1| type III secretion system apparatus lipoprotein EscJ,SsaJ [Arsenophonus nasoniae] Length = 234 Score = 90.9 bits (224), Expect = 5e-16, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 63/168 (37%), Gaps = 8/168 (4%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDNGSS----ISVPSSMVGKARIHLAAQGLPS 104 LY L + N++ L +ID +G + + + A L G P Sbjct: 10 VELYRNLPQDEANQMVALLMLNHIDVNSEIDGKTGKVTLQIEKDKFIDAVEILRQNGYPK 69 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM--PDMG 162 + +LF + +E E ++ RT+ S+ G+++ARV I Sbjct: 70 TQYVGIEDLFPAGQ-LVSSPAQEEAKMRYLKEQQLERTLSSMDGVISARVSIAQADNSES 128 Query: 163 SFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVTV 209 + A + +V I+ EA IR+L+ A+ L +++ Sbjct: 129 NIDNTTAEKSVAVYIKYSPEVNMNGVEAQIRNLIKNAISGLQSDKISL 176 >gi|194350711|gb|ACF53786.1| HrcJ [Pectobacterium carotovorum subsp. brasiliensis] Length = 128 Score = 90.5 bits (223), Expect = 6e-16, Method: Composition-based stats. Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 2/129 (1%) Query: 75 RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134 R+ G ++ + + + +A L A GLP S + E+F K + T + + A Sbjct: 1 RVEKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK-SGVISTPLEERARYIYA 59 Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRH 193 L E+ T+ I G++ ARVH+V+P+ + + +A+V I+ E IR Sbjct: 60 LSQEVEATLAQIDGVLVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGMEQRIRR 119 Query: 194 LVAAAVPNL 202 +VA+++P L Sbjct: 120 MVASSIPGL 128 >gi|238785747|ref|ZP_04629720.1| Type III secretion system apparatus lipoprotein [Yersinia bercovieri ATCC 43970] gi|238713330|gb|EEQ05369.1| Type III secretion system apparatus lipoprotein [Yersinia bercovieri ATCC 43970] Length = 236 Score = 90.1 bits (222), Expect = 8e-16, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 69/187 (36%), Gaps = 7/187 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGLPSSSS 107 LY L + N++ L I + S+SV + A L G P Sbjct: 18 LYSGLSEGEANQMLALLMLHQIKAEKQSDKGGAVSLSVDKNQFINAVELLRQNGFPRQQF 77 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 + ELF + ++ V E ++ + + G++ A V I MP K Sbjct: 78 TTVDELFPSNQ-LVTSPGQEQAKMVYLKEQQLESMLSHMDGVIHADVTIAMPAPTD-GKS 135 Query: 168 GARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVLDSTGKL-LTANEMERN 225 ASV I+ + I++L+ AVP +D ++V+ +A ++ Sbjct: 136 SVPHAASVFIKYSPEVNLLIYQPQIKNLIRDAVPGIDYAQISVVMQPANYRFSATPPAQS 195 Query: 226 ILGKSLS 232 +G+ L Sbjct: 196 GMGRGLQ 202 >gi|238793326|ref|ZP_04636952.1| Type III secretion system apparatus lipoprotein [Yersinia intermedia ATCC 29909] gi|238727295|gb|EEQ18823.1| Type III secretion system apparatus lipoprotein [Yersinia intermedia ATCC 29909] Length = 233 Score = 90.1 bits (222), Expect = 9e-16, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 66/188 (35%), Gaps = 6/188 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRI-SDNGSSI--SVPSSMVGKARIHLAAQGLPSSSS 107 LY L + N++ L I S+ G ++ SV S A L G P Sbjct: 14 LYSGLSEGEANQMLALLMLHQIKAEKQSEKGGTVGLSVDKSQFINAVELLRQNGFPRQKF 73 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 + LF + ++ V E ++ + + G++ A V I MP K Sbjct: 74 TTVDTLFPSNQ-LVTSPGQEQAKMVYLKEQQLESMLSHMDGVIHADVTIAMPAPTD-GKS 131 Query: 168 GARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI 226 ASV I+ +S + I++L+ +P +D ++V+ Sbjct: 132 SVPHAASVFIKYSPEVNLQSYQPQIKNLIRDGIPGIDYSQISVVMQPANYRFIAAEPHEH 191 Query: 227 LGKSLSIV 234 LS+ Sbjct: 192 AEAQLSLQ 199 >gi|330899426|gb|EGH30845.1| flagellar MS-ring protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 139 Score = 89.7 bits (221), Expect = 1e-15, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 63/160 (39%), Gaps = 27/160 (16%) Query: 401 RRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALVFLVGTLLVTFLG 456 RGD++++ ++ F + Q F DI+ + VG + + L Sbjct: 1 SRGDSVSVINVPFSSERAEVLPEASFYSQPWFWDIVKQ-----------AVGVIFILILV 49 Query: 457 LHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF-SHSRN 514 LR L+NI + K+ E+ G G + ND ++L + S + Sbjct: 50 FGVLRPVLNNITNGKRKELAGFGG-DAELGGMGGLDGELSNDRVSLGGPQSILLPSPTEG 108 Query: 515 LQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 +++N+ + ++ + R A+++++W ++ Sbjct: 109 YDAQLNA---------IKSLVAEDPGRVAQVVKEWINTDE 139 >gi|115377828|ref|ZP_01465016.1| bcscJ [Stigmatella aurantiaca DW4/3-1] gi|310820299|ref|YP_003952657.1| type III secretion apparatus lipoprotein, yscj/hrcj family [Stigmatella aurantiaca DW4/3-1] gi|115365160|gb|EAU64207.1| bcscJ [Stigmatella aurantiaca DW4/3-1] gi|309393371|gb|ADO70830.1| Type III secretion apparatus lipoprotein, YscJ/HrcJ family [Stigmatella aurantiaca DW4/3-1] Length = 269 Score = 89.7 bits (221), Expect = 1e-15, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 70/168 (41%), Gaps = 13/168 (7%) Query: 54 KLEVSDVNRISVALSEANIDF-RISDNGS-----SISVPSSMVGKARIHLAAQGLPSSSS 107 L D N I V LS+ I ++ + SI VP + +A L A LP Sbjct: 28 GLTEQDANEIYVLLSKNGISAVKLKEGEGQDVQFSIQVPKADAAQAAELLRANSLPRPME 87 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 S T+ + ++A+ GE++ + I G++ + V + +P+ + Sbjct: 88 KGFNHF--AKGSMVPTAAEERAMMLKAIAGEVSNALNKIDGVLESNVIVNIPENNDLTQP 145 Query: 168 GAR--PTASVMIR---AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 + P+ASVMIR ++ ++ VA+AV L VTVL Sbjct: 146 ENKPMPSASVMIRYRPSLEGKAPVEEPQVKQFVASAVQELKPEAVTVL 193 >gi|213028051|ref|ZP_03342498.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 156 Score = 89.3 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 65/175 (37%), Gaps = 19/175 (10%) Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440 + +I + A G + +RGDT+ + + F ++ ++ F S ++ Sbjct: 1 TADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDNTGGELPFWQQQS-FIDQLL 56 Query: 441 NALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIA 500 A +L+ ++ L A+ ++ + + AV L ++ + Sbjct: 57 AAGRWLLVLVVAWILWRKAVHPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQ 115 Query: 501 LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 +NQ R+ + V Q R+ M + + A ++R+W ++ E Sbjct: 116 QRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSNDHE 156 >gi|332159951|ref|YP_004296528.1| type III secretion system apparatus lipoprotein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607497|emb|CBY28995.1| secretion system apparatus SsaJ [Yersinia enterocolitica subsp. palearctica Y11] gi|325664181|gb|ADZ40825.1| Type III secretion system apparatus lipoprotein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862423|emb|CBX72582.1| secretion system apparatus lipoprotein ssaJ [Yersinia enterocolitica W22703] Length = 243 Score = 88.9 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 38/206 (18%), Positives = 73/206 (35%), Gaps = 7/206 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI-SDNGSSIS--VPSSM 89 +M + ++ + LY L + N++ L I S+ G +++ V S Sbjct: 7 LMALLLVVMSLSGCGME-LYSGLSEGEANQMLALLMLHQIKAEKQSEKGGTVALNVDKSQ 65 Query: 90 VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149 A L G P S ELF + ++ V E ++ + + G+ Sbjct: 66 FINAVELLRQHGFPRQRFASVDELFPSNQ-LVTSPGQEQAKMVYLKEQQLESMLSHMDGV 124 Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVT 208 + A V I MP K ASV I+ S + I++L+ +P +D ++ Sbjct: 125 IQADVTIAMPAPTD-GKSSVPHAASVFIKYSPEVNLLSYQPQIKNLIRDGIPGIDFSQIS 183 Query: 209 VLDSTGKLLTANEMERNILGKSLSIV 234 V+ + + ++ Sbjct: 184 VVMQPTNYRFSAPATQQQSHSEAALQ 209 >gi|167464169|ref|ZP_02329258.1| flagellar MS-ring protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 272 Score = 88.5 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 47/310 (15%), Positives = 107/310 (34%), Gaps = 41/310 (13%) Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYD-PDSKVERSIRLS-KDAQRSETSQPES 304 LA G + VV+ +N D ++ +E + P+ ++ + +S ++ Q+S +S + Sbjct: 1 NLLAPMYGQNKVVVNVVSTMNFDQKKTKEQLVSAPNQDEQKGLEISVQELQKSASSDGAT 60 Query: 305 AVTVE-QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 A V V + +++ ++ NYE+N + Y ++ L+I V + Sbjct: 61 AGGVAGSGTNDVPGYESTSNSGNSKSEENQKTVNYEVNRITNDIIRAPYVVKDLNITVAI 120 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 + + G+ + +++ + I K A +G+ + D ++ ++ Sbjct: 121 DTKSVNGNPGKIENAELLENAMKGIVKTALADSGVEYEQAD---------IDKKVTIIPK 171 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 S + + + + L + + ALRR Sbjct: 172 ELQSPSSTTASNLNNYLLYGGIGLAALALIAGTVFALRRRKK------------------ 213 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 + ++ DI + + + Q R +L + + E F Sbjct: 214 -NLLEEEEEYITTGQQQVEYPTIDIENVTNDNQVR----------KQLETLAKKKPEEFV 262 Query: 544 KILRKWARSE 553 +LR W E Sbjct: 263 NLLRTWLVDE 272 >gi|193061969|ref|ZP_03043065.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli E22] gi|194426282|ref|ZP_03058837.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli B171] gi|260845702|ref|YP_003223480.1| T3SS structure protein EscJ [Escherichia coli O103:H2 str. 12009] gi|260858257|ref|YP_003232148.1| T3SS structure protein EscJ [Escherichia coli O26:H11 str. 11368] gi|13447711|gb|AAK26710.1|AF200363_18 EscJ [Escherichia coli] gi|18034515|gb|AAL57537.1|AF453441_21 EscJ [Escherichia coli] gi|17384645|emb|CAC81857.1| EscJ protein [Escherichia coli] gi|57434462|emb|CAI43879.1| EscJ protein [Escherichia coli] gi|192932189|gb|EDV84787.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli E22] gi|194415590|gb|EDX31857.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli B171] gi|195183203|dbj|BAG66748.1| T3SS structure protein EscJ [Escherichia coli O111:H-] gi|254692335|emb|CAR47976.1| EscJ protein [Escherichia coli] gi|254692403|emb|CAR48046.1| EscJ protein [Escherichia coli] gi|257756906|dbj|BAI28408.1| T3SS structure protein EscJ [Escherichia coli O26:H11 str. 11368] gi|257760849|dbj|BAI32346.1| T3SS structure protein EscJ [Escherichia coli O103:H2 str. 12009] gi|323153823|gb|EFZ40065.1| hypothetical protein ECEPECA14_4272 [Escherichia coli EPECa14] gi|323163015|gb|EFZ48848.1| hypothetical protein ECE128010_0611 [Escherichia coli E128010] Length = 190 Score = 88.5 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 67/164 (40%), Gaps = 10/164 (6%) Query: 51 LYVKLEVSDVNRISVALSEA--NIDFRISDNGS-SISVPSSMVGKARIHLAAQGLPSSSS 107 LY L + N++ L N+ + +G+ +ISV +A L G P Sbjct: 24 LYTGLTEKEANQMQALLLSNDVNVSKEMDKSGNVTISVEKEDFVRAITILNNNGFPKKKF 83 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 + E+ + + + E +I R + I G++ V + + + Sbjct: 84 -ADIEVIFPPSQLVASPSQENAKINYLKEQDIERLLSKIPGVIDCSVSLNVNNN-----E 137 Query: 168 GARPTASVMIRAINP-SVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 +A+V++ + ++ S I++LV +V +L + +++V+ Sbjct: 138 SQPSSAAVLVISSPEVNLAPSVIQIKNLVKNSVDDLKLENISVV 181 >gi|170766695|ref|ZP_02901148.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia albertii TW07627] gi|170124133|gb|EDS93064.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia albertii TW07627] gi|315617523|gb|EFU98129.1| conserved hypothetical protein [Escherichia coli 3431] Length = 190 Score = 88.2 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 76/186 (40%), Gaps = 18/186 (9%) Query: 29 ILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA--NIDFRISDNGS-SISV 85 +LV I L +A + + LY L + N++ L N+ + +G+ +ISV Sbjct: 10 LLVAICLTVACK--------EQLYTGLTEKEANQMQALLLSNDVNVSKEMDKSGNVTISV 61 Query: 86 PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145 +A L G P + E+ + + + E +I R + Sbjct: 62 EKEDFVRAITILNNNGFPKKKF-ADIEVIFPPSQLVASPSQENAKINYLKEQDIERLLSK 120 Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP-SVYKSAEAIRHLVAAAVPNLDM 204 I G++ V + + + +A+V++ + ++ S I++LV +V +L + Sbjct: 121 IPGVIDCSVSLNVNNN-----ESQPSSAAVLVISSPEVNLAPSVIQIKNLVKNSVDDLKL 175 Query: 205 GDVTVL 210 +++V+ Sbjct: 176 ENISVV 181 >gi|7025353|gb|AAF35844.1|AF220002_1 flagellar M ring protein FliF [Rhodospirillum centenum] Length = 132 Score = 88.2 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 1/79 (1%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 F ++ LY L+ ++ RI L + +++S G +I +P + + R+ LA Q Sbjct: 19 FGLSRAPMGLLYAGLDDAEAGRILTQLQSMKVPYQVSGTGGAILLPQDQIARTRMLLAQQ 78 Query: 101 GLPSSSSNSGYELFDKVNS 119 GLPS+ +GYELFD+ + Sbjct: 79 GLPSAGG-AGYELFDEQGA 96 >gi|310823558|ref|YP_003955916.1| type III secretion lipoprotein, yscj/flif family [Stigmatella aurantiaca DW4/3-1] gi|309396630|gb|ADO74089.1| Type III secretion lipoprotein, YscJ/FliF family [Stigmatella aurantiaca DW4/3-1] Length = 267 Score = 88.2 bits (217), Expect = 4e-15, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 9/165 (5%) Query: 54 KLEVSDVNRISVALSEANIDFRISDN-----GSSISVPSSMVGKARIHLAAQGLPSSSSN 108 L+ N + L E ++ R SI V + A LA GLP + Sbjct: 27 GLDERQANELQTVLLERGLEARKVPEAGKKPSWSIEVDEAQASAAVRILAELGLPRPVAE 86 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 +G ++F + T +++ R R LE I +T+Q + G++ ARVH+++P Sbjct: 87 TGCDVFGG-GALLRTPIEEQLCRTRVLERGIEKTLQGMEGVLVARVHLMVPPPARPGHAP 145 Query: 169 ARPTASVMIRAINP---SVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 + AS ++R + + +S + ++ L+A V L V++L Sbjct: 146 SAAKASALLRTASGQADRLRQSQDRLQALIAGGVEGLSPEAVSLL 190 >gi|193070396|ref|ZP_03051338.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli E110019] gi|192956335|gb|EDV86796.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli E110019] Length = 190 Score = 87.8 bits (216), Expect = 4e-15, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 73/180 (40%), Gaps = 10/180 (5%) Query: 35 LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA--NIDFRISDNGS-SISVPSSMVG 91 LF+ A + + LY L + N++ L N+ + +G+ ++SV Sbjct: 8 LFLLAAICLTVACKEQLYTGLTEKEANQMQALLLSNDVNVSKEMDKSGNMTLSVEKEDFV 67 Query: 92 KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVA 151 +A L G P + E+ + + + E +I R + I G++ Sbjct: 68 RAITILNNNGFPKKKF-ADIEVIFPPSQLVASPSQENAKINYLKEQDIERLLSKIPGVID 126 Query: 152 ARVHIVMPDMGSFRKIGARPTASVMIRAINP-SVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 V + + + +A+V++ + ++ S I++LV +V +L + +++V+ Sbjct: 127 CSVSLNVNNN-----ENQPSSAAVLVISSPEVNLAPSVIQIKNLVKNSVDDLKLENISVV 181 >gi|45440272|ref|NP_991811.1| type III secretion system apparatus lipoprotein [Yersinia pestis biovar Microtus str. 91001] gi|108810010|ref|YP_653926.1| type III secretion system apparatus lipoprotein [Yersinia pestis Antiqua] gi|108813566|ref|YP_649333.1| type III secretion system apparatus lipoprotein [Yersinia pestis Nepal516] gi|145600955|ref|YP_001165031.1| type III secretion system apparatus lipoprotein [Yersinia pestis Pestoides F] gi|150260689|ref|ZP_01917417.1| type III secretion system apparatus lipoprotein [Yersinia pestis CA88-4125] gi|162418417|ref|YP_001608235.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Yersinia pestis Angola] gi|165926703|ref|ZP_02222535.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Yersinia pestis biovar Orientalis str. F1991016] gi|165936453|ref|ZP_02225021.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Yersinia pestis biovar Orientalis str. IP275] gi|166010454|ref|ZP_02231352.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Yersinia pestis biovar Antiqua str. E1979001] gi|166213895|ref|ZP_02239930.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Yersinia pestis biovar Antiqua str. B42003004] gi|167402484|ref|ZP_02307939.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419313|ref|ZP_02311066.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167469434|ref|ZP_02334138.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Yersinia pestis FV-1] gi|218927469|ref|YP_002345344.1| type III secretion system apparatus lipoprotein [Yersinia pestis CO92] gi|229836517|ref|ZP_04456683.1| type III secretion system apparatus lipoprotein [Yersinia pestis Pestoides A] gi|229840125|ref|ZP_04460284.1| type III secretion system apparatus lipoprotein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842206|ref|ZP_04462361.1| type III secretion system apparatus lipoprotein [Yersinia pestis biovar Orientalis str. India 195] gi|229904054|ref|ZP_04519167.1| type III secretion system apparatus lipoprotein [Yersinia pestis Nepal516] gi|294502335|ref|YP_003566397.1| type III secretion system apparatus lipoprotein [Yersinia pestis Z176003] gi|45435128|gb|AAS60688.1| type III secretion system apparatus lipoprotein [Yersinia pestis biovar Microtus str. 91001] gi|108777214|gb|ABG19733.1| type III secretion system apparatus lipoprotein [Yersinia pestis Nepal516] gi|108781923|gb|ABG15981.1| type III secretion system apparatus lipoprotein [Yersinia pestis Antiqua] gi|115346080|emb|CAL18948.1| type III secretion system apparatus lipoprotein [Yersinia pestis CO92] gi|145212651|gb|ABP42058.1| type III secretion system apparatus lipoprotein [Yersinia pestis Pestoides F] gi|149290097|gb|EDM40174.1| type III secretion system apparatus lipoprotein [Yersinia pestis CA88-4125] gi|162351232|gb|ABX85180.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Yersinia pestis Angola] gi|165915569|gb|EDR34178.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Yersinia pestis biovar Orientalis str. IP275] gi|165921326|gb|EDR38550.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Yersinia pestis biovar Orientalis str. F1991016] gi|165990544|gb|EDR42845.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Yersinia pestis biovar Antiqua str. E1979001] gi|166204870|gb|EDR49350.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Yersinia pestis biovar Antiqua str. B42003004] gi|166963307|gb|EDR59328.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048134|gb|EDR59542.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|229679824|gb|EEO75927.1| type III secretion system apparatus lipoprotein [Yersinia pestis Nepal516] gi|229690516|gb|EEO82570.1| type III secretion system apparatus lipoprotein [Yersinia pestis biovar Orientalis str. India 195] gi|229696491|gb|EEO86538.1| type III secretion system apparatus lipoprotein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706201|gb|EEO92209.1| type III secretion system apparatus lipoprotein [Yersinia pestis Pestoides A] gi|262360415|gb|ACY57136.1| type III secretion system apparatus lipoprotein [Yersinia pestis D106004] gi|262364365|gb|ACY60922.1| type III secretion system apparatus lipoprotein [Yersinia pestis D182038] gi|294352794|gb|ADE63135.1| type III secretion system apparatus lipoprotein [Yersinia pestis Z176003] gi|320013873|gb|ADV97444.1| type III secretion system apparatus lipoprotein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 243 Score = 87.8 bits (216), Expect = 4e-15, Method: Composition-based stats. Identities = 39/206 (18%), Positives = 76/206 (36%), Gaps = 7/206 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSS-ISVPSSM 89 ++ + ++ + LY L + N++ L I+ +I +G ++V Sbjct: 7 MLAIVLMTLSLSGCDME-LYSGLSEGEANQMLALLMLHQINAEKQIEKSGMVGLTVDKRQ 65 Query: 90 VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149 A L G P + ELF + ++ V E ++ + + G+ Sbjct: 66 FINAVELLRQNGFPRQRFITVDELFPANQ-LVTSPTQEQAKMVFLKEQQLENMLSHMDGV 124 Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVT 208 + A V + MP K TASV I+ +S ++ I+ LV AVP +D ++ Sbjct: 125 IHADVTVAMPM-SVDGKNPLPHTASVFIKYSPEVNLQSYQSQIKGLVRDAVPGIDYAKIS 183 Query: 209 VLDSTGKLLTANEMERNILGKSLSIV 234 V+ + G ++ Sbjct: 184 VVMQPANYRFSASEAEQQQGPQTTVQ 209 >gi|85059273|ref|YP_454975.1| type III secretion apparatus [Sodalis glossinidius str. 'morsitans'] gi|84779793|dbj|BAE74570.1| type III secretion apparatus [Sodalis glossinidius str. 'morsitans'] Length = 242 Score = 87.8 bits (216), Expect = 5e-15, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 6/167 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDF---RISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 LY L D N++ L + +ID R G ++ V + A L G P Sbjct: 23 LYSGLPEEDANQMLAILMQHHIDADKQRGEGGGITLRVDQTQFINAVELLRLNGFPHRKY 82 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 + E+ N ++ ++ + E I + + G+V A V I G Sbjct: 83 TTT-EMMFPPNQLVVSPNEEQQKILYLKEQRIEGMLSQMEGVVQADVAIASRSQGG-EGD 140 Query: 168 GARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVLDST 213 A + +V I+ ++ IR+LV AVP L +++L Sbjct: 141 TAPISVAVFIKYSPQVNMETFRMQIRNLVENAVPGLQYDHISILMQP 187 >gi|18072079|gb|AAL58461.1|AF456768_1 putative EscJ protein [Escherichia coli] Length = 190 Score = 87.8 bits (216), Expect = 5e-15, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 72/180 (40%), Gaps = 10/180 (5%) Query: 35 LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA--NIDFRISDNGS-SISVPSSMVG 91 LF A + + LY L + N++ L N+ + +G+ ++SV Sbjct: 8 LFFLAAICLTVACKEQLYTGLTEKEANQMQALLLSNDVNVSKEMDKSGNMTLSVEKEDFV 67 Query: 92 KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVA 151 +A L G P + E+ + + + E +I R + I G++ Sbjct: 68 RAITILNNNGFPKKKF-ADIEVIFPPSQLVASPSQENAKINYLKEQDIERLLSKIPGVID 126 Query: 152 ARVHIVMPDMGSFRKIGARPTASVMIRAINP-SVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 V + + + +A+V++ + ++ S I++LV +V +L + +++V+ Sbjct: 127 CSVSLNVNNN-----ESQPSSAAVLVISSPEVNLAPSVIQIKNLVKNSVDDLKLENISVV 181 >gi|51594674|ref|YP_068865.1| type III secretion system apparatus lipoprotein, EscJ/SsaJ [Yersinia pseudotuberculosis IP 32953] gi|153948722|ref|YP_001402777.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Yersinia pseudotuberculosis IP 31758] gi|170026123|ref|YP_001722628.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Yersinia pseudotuberculosis YPIII] gi|186893677|ref|YP_001870789.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Yersinia pseudotuberculosis PB1/+] gi|51587956|emb|CAH19559.1| type III secretion system apparatus lipoprotein, EscJ/SsaJ [Yersinia pseudotuberculosis IP 32953] gi|152960217|gb|ABS47678.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Yersinia pseudotuberculosis IP 31758] gi|169752657|gb|ACA70175.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Yersinia pseudotuberculosis YPIII] gi|186696703|gb|ACC87332.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Yersinia pseudotuberculosis PB1/+] Length = 243 Score = 87.4 bits (215), Expect = 6e-15, Method: Composition-based stats. Identities = 39/206 (18%), Positives = 76/206 (36%), Gaps = 7/206 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSS-ISVPSSM 89 ++ + ++ + LY L + N++ L I+ +I +G ++V Sbjct: 7 MLAIVLMTLSLSGCDME-LYSGLSEGEANQMLALLMLHQINAEKQIEKSGMVGLTVDKRQ 65 Query: 90 VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149 A L G P + ELF + ++ V E ++ + + G+ Sbjct: 66 FINAVELLRQNGFPRQRFITVDELFPANQ-LVTSPTQEQAKMVFLKEQQLENMLSHMDGV 124 Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVT 208 + A V + MP K TASV I+ +S ++ I+ LV AVP +D ++ Sbjct: 125 IHADVTVAMPM-SVDGKNPLPHTASVFIKYSPEVNLQSYQSQIKGLVRDAVPGIDYAKIS 183 Query: 209 VLDSTGKLLTANEMERNILGKSLSIV 234 V+ + G ++ Sbjct: 184 VVMQPANYRFSASEAEQQQGPQTTVQ 209 >gi|15804234|ref|NP_290273.1| hypothetical protein Z5124 [Escherichia coli O157:H7 EDL933] gi|15833827|ref|NP_312600.1| EscJ [Escherichia coli O157:H7 str. Sakai] gi|168748650|ref|ZP_02773672.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC4113] gi|168753523|ref|ZP_02778530.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC4401] gi|168759820|ref|ZP_02784827.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC4501] gi|168766120|ref|ZP_02791127.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC4486] gi|168772331|ref|ZP_02797338.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC4196] gi|168779855|ref|ZP_02804862.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC4076] gi|189404719|ref|ZP_02810595.2| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC869] gi|189405721|ref|ZP_02823676.2| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC508] gi|195936256|ref|ZP_03081638.1| EscJ [Escherichia coli O157:H7 str. EC4024] gi|208805778|ref|ZP_03248115.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC4206] gi|208813611|ref|ZP_03254940.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC4045] gi|208821249|ref|ZP_03261569.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC4042] gi|209399518|ref|YP_002273170.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC4115] gi|215488984|ref|YP_002331415.1| T3SS structure protein EscJ [Escherichia coli O127:H6 str. E2348/69] gi|217326602|ref|ZP_03442686.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. TW14588] gi|254795648|ref|YP_003080485.1| LEE-encoded type III secretion system factor [Escherichia coli O157:H7 str. TW14359] gi|260869691|ref|YP_003236093.1| T3SS structure protein EscJ [Escherichia coli O111:H- str. 11128] gi|261225792|ref|ZP_05940073.1| LEE-encoded type III secretion system factor [Escherichia coli O157:H7 str. FRIK2000] gi|261258837|ref|ZP_05951370.1| T3SS structure protein EscJ [Escherichia coli O157:H7 str. FRIK966] gi|291285061|ref|YP_003501879.1| EscJ [Escherichia coli O55:H7 str. CB9615] gi|312967942|ref|ZP_07782154.1| conserved hypothetical protein [Escherichia coli 2362-75] gi|12518464|gb|AAG58837.1|AE005596_7 escJ [Escherichia coli O157:H7 str. EDL933] gi|2865286|gb|AAC38379.1| EscJ [Escherichia coli] gi|3414907|gb|AAC31518.1| L0039 [Escherichia coli] gi|13364048|dbj|BAB37996.1| type III secretion system EscJ protein [Escherichia coli O157:H7 str. Sakai] gi|187771787|gb|EDU35631.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC4196] gi|188016943|gb|EDU55065.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC4113] gi|189002607|gb|EDU71593.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC4076] gi|189358868|gb|EDU77287.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC4401] gi|189364584|gb|EDU83003.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC4486] gi|189369495|gb|EDU87911.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC4501] gi|189374615|gb|EDU93031.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC869] gi|189378814|gb|EDU97230.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC508] gi|195957524|gb|ACG59635.1| type III secretion system protein EscJ [Escherichia coli O157:H7] gi|195957583|gb|ACG59693.1| type III secretion system protein EscJ [Escherichia coli] gi|195957640|gb|ACG59749.1| EscJ [Escherichia coli] gi|208725579|gb|EDZ75180.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC4206] gi|208734888|gb|EDZ83575.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC4045] gi|208741372|gb|EDZ89054.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC4042] gi|209160918|gb|ACI38351.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC4115] gi|215267056|emb|CAS11501.1| T3SS structure protein EscJ [Escherichia coli O127:H6 str. E2348/69] gi|217322823|gb|EEC31247.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. TW14588] gi|221361430|emb|CAX18583.1| Type III secretion system, LEE associated [Escherichia coli] gi|221361487|emb|CAX18658.1| Type III secretion system, LEE associated [Escherichia coli] gi|221361548|emb|CAX18738.1| Type III secretion system, LEE associated [Escherichia coli] gi|254595048|gb|ACT74409.1| LEE-encoded type III secretion system factor [Escherichia coli O157:H7 str. TW14359] gi|255348321|gb|ACU09463.1| EscJ protein [Escherichia coli] gi|257766047|dbj|BAI37542.1| T3SS structure protein EscJ [Escherichia coli O111:H- str. 11128] gi|290764934|gb|ADD58895.1| EscJ [Escherichia coli O55:H7 str. CB9615] gi|312287503|gb|EFR15411.1| conserved hypothetical protein [Escherichia coli 2362-75] gi|320191253|gb|EFW65903.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC1212] gi|320193807|gb|EFW68440.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli WV_060327] gi|320201524|gb|EFW76103.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli EC4100B] gi|320639364|gb|EFX08979.1| EscJ [Escherichia coli O157:H7 str. G5101] gi|320644808|gb|EFX13844.1| EscJ [Escherichia coli O157:H- str. 493-89] gi|320650072|gb|EFX18568.1| EscJ [Escherichia coli O157:H- str. H 2687] gi|320655419|gb|EFX23354.1| EscJ [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661046|gb|EFX28482.1| EscJ [Escherichia coli O55:H7 str. USDA 5905] gi|320666171|gb|EFX33177.1| EscJ [Escherichia coli O157:H7 str. LSU-61] gi|323178904|gb|EFZ64480.1| hypothetical protein ECOK1180_2638 [Escherichia coli 1180] gi|326337303|gb|EGD61138.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. 1044] gi|326341677|gb|EGD65466.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. 1125] Length = 190 Score = 87.4 bits (215), Expect = 6e-15, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 73/180 (40%), Gaps = 10/180 (5%) Query: 35 LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA--NIDFRISDNGS-SISVPSSMVG 91 LF+ A + + LY L + N++ L N+ + +G+ ++SV Sbjct: 8 LFLLAAICLTVACKEQLYTGLTEKEANQMQALLLSNDVNVSKEMDKSGNMTLSVEKEDFV 67 Query: 92 KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVA 151 +A L G P + E+ + + + E +I R + I G++ Sbjct: 68 RAITILNNNGFPKKKF-ADIEVIFPPSQLVASPSQENAKINYLKEQDIERLLSKIPGVID 126 Query: 152 ARVHIVMPDMGSFRKIGARPTASVMIRAINP-SVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 V + + + +A+V++ + ++ S I++LV +V +L + +++V+ Sbjct: 127 CSVSLNVNNN-----ESQPSSAAVLVISSPEVNLAPSVIQIKNLVKNSVDDLKLENISVV 181 >gi|54311610|emb|CAG17525.1| EscJ protein [Escherichia coli] Length = 190 Score = 87.4 bits (215), Expect = 6e-15, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 73/180 (40%), Gaps = 10/180 (5%) Query: 35 LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA--NIDFRISDNGS-SISVPSSMVG 91 LF+ A + + LY L + N++ L N+ + +G+ ++SV Sbjct: 8 LFLLAAICLTVACKEQLYTGLTEKEANQMQALLLSNDVNVSKEMDKSGNMTLSVEKEDFV 67 Query: 92 KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVA 151 +A L G P + E+ + + + E +I R + I G++ Sbjct: 68 RAITILNNNGFPKKKF-ANIEVIFPPSQLVASPSQENAKINYLKEQDIERLLSKIPGVID 126 Query: 152 ARVHIVMPDMGSFRKIGARPTASVMIRAINP-SVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 V + + + +A+V++ + ++ S I++LV +V +L + +++V+ Sbjct: 127 CSVSLNVNNN-----ESQPSSAAVLVISSPEVNLAPSVIQIKNLVKNSVDDLKLENISVV 181 >gi|310923250|emb|CBW54716.1| YscJ, lipoprotein, signal peptidase II cleavage site LFLTG-CKVDL, length difference in automated annotation (should start at 35114 gtg/V, point mutation here from M to V), PMID 18227263 [Yersinia enterocolitica (type O:8)] gi|318608181|emb|CBY78155.1| type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) [Yersinia enterocolitica subsp. palearctica Y11] Length = 210 Score = 87.0 bits (214), Expect = 8e-15, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 67/153 (43%), Gaps = 6/153 (3%) Query: 63 ISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + L + + + + V S V +A L +G P S ++ ++F K Sbjct: 1 MLALLRQEGLSADKEPDKDGKIKLLVEESDVAQAIDILKRKGYPHESFSTLQDVFPKD-G 59 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIR 178 + + A EI+RT+ I G++ ARVH+V+P+ + + K G +ASV I+ Sbjct: 60 LISSPIEELARLNYAKAQEISRTLSEIDGVLVARVHVVLPEEQNNKGKKGVAASASVFIK 119 Query: 179 AINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 + + I+ LV ++ L ++V+ Sbjct: 120 HAADIQFDTYIPQIKQLVNNSIEGLAYDRISVI 152 >gi|220915860|ref|YP_002491164.1| secretory protein YscJ/FliF family protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219953714|gb|ACL64098.1| secretory protein YscJ/FliF family protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 239 Score = 86.6 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 7/134 (5%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRIS-----DNGSSISVPSSMVGKARIHLAAQGLP 103 + L L+ N + VAL E I + D G + V ++ +AR LA + LP Sbjct: 20 EALLHGLDEPQANDVLVALDEGGIAAEKAREDGADAGWEVRVAAADAVRARRVLAERDLP 79 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 +G++ S T+ + + AL GE+AR+I++I G+V ARVH+ +P Sbjct: 80 RQ-RPAGFDAVLAKGSMVPTATEEHALYLHALSGELARSIEAIDGVVGARVHLGLPQADP 138 Query: 164 FRKIGAR-PTASVM 176 FR P A+V+ Sbjct: 139 FRPGERPAPRAAVL 152 >gi|283786642|ref|YP_003366507.1| T3SS structural protein EscJ [Citrobacter rodentium ICC168] gi|15723917|gb|AAL06364.1|AF311901_16 EscJ [Citrobacter rodentium] gi|282950096|emb|CBG89730.1| T3SS structural protein EscJ [Citrobacter rodentium ICC168] Length = 190 Score = 86.6 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 66/164 (40%), Gaps = 10/164 (6%) Query: 51 LYVKLEVSDVNRISVALSEA--NIDFRISDNGS-SISVPSSMVGKARIHLAAQGLPSSSS 107 LY L + N + L N+ + +G+ +ISV +A L G P Sbjct: 24 LYTGLTEKEANLMQALLLSNDVNVSKEMDKSGNVTISVEKEDFVRAITILNNNGFPKKKF 83 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 + E+ + + + E +I R + I G++ V + + + Sbjct: 84 -ADIEVIFPPSQLVTSPSQENAKINYLKEQDIERLLSKIPGVIDCSVSLNVNNN-----E 137 Query: 168 GARPTASVMIRAINP-SVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 +A+V++ + ++ S I++L+ +V +L + +++V+ Sbjct: 138 SQPSSAAVLVISSPEVNLAPSVIQIKNLIKNSVDDLKLENISVV 181 >gi|16904094|gb|AAL30751.1|AF435079_1 putative EscJ protein [Escherichia coli] Length = 190 Score = 85.8 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 67/164 (40%), Gaps = 10/164 (6%) Query: 51 LYVKLEVSDVNRISVALSEA--NIDFRISDNGS-SISVPSSMVGKARIHLAAQGLPSSSS 107 LY L + N++ L N+ + +G+ +ISV +A L G P Sbjct: 24 LYTGLTEKEANQMQALLLSNDVNVSKEMDKSGNVTISVEKEDFVRAITILNNNGFPKKKF 83 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 + E+ + + + + +I R + I G++ V + + + Sbjct: 84 -ADIEVIFPPSQLVASPSQENAKINYLKDQDIERLLSKIPGVIDCSVSLNVNNN-----E 137 Query: 168 GARPTASVMIRAINP-SVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 +A+V++ + ++ S I++LV +V +L + +++V+ Sbjct: 138 SQPSSAAVLVISSPEVNLAPSVIQIKNLVKNSVDDLKLENISVV 181 >gi|207111036|ref|ZP_03245198.1| flagellar MS-ring protein [Helicobacter pylori HPKX_438_CA4C1] Length = 69 Score = 85.5 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 31/69 (44%), Positives = 47/69 (68%), Gaps = 2/69 (2%) Query: 81 SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140 +I +P V + RI LA+QG+P +S G+E+FD + FG T F Q I +RA+EGE++ Sbjct: 1 DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFDTKD-FGATDFDQNIKLIRAIEGELS 58 Query: 141 RTIQSISGI 149 RTI+S++ I Sbjct: 59 RTIESLNPI 67 >gi|94986985|ref|YP_594918.1| LscJ [Lawsonia intracellularis PHE/MN1-00] gi|94731234|emb|CAJ54597.1| LscJ [Lawsonia intracellularis PHE/MN1-00] Length = 290 Score = 85.5 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 39/163 (23%), Positives = 61/163 (37%), Gaps = 5/163 (3%) Query: 52 YVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGLPSSSSN 108 Y L VN + L ID S G S+ V + A L LP + Sbjct: 46 YKGLTEDQVNEMVATLIYRGIDVEKSPGGKEGFSLLVAEEQLISALEILKKNALPRENYV 105 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 S E+F + + A+ E+A T I G++ RVH+V Sbjct: 106 SLGEVF-SGQGMISSQSEERARMAYAISQELANTFSRIDGVLTTRVHVVPGYTDQAVDSK 164 Query: 169 ARPTASVMIRAINPS-VYKSAEAIRHLVAAAVPNLDMGDVTVL 210 P+ + IR S V +IR + A ++P+L+ +V+ Sbjct: 165 ILPSMGIFIRHTPDSPVVNMLPSIREVAAKSLPDLEYDRTSVM 207 >gi|194350713|gb|ACF53787.1| HrcJ [Pectobacterium carotovorum subsp. brasiliensis] Length = 120 Score = 85.1 bits (209), Expect = 3e-14, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 + + + + +A L A GLP S + E+F K + T + + AL E+ T Sbjct: 1 LVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK-SGVISTPLEERARYIYALSQEVEAT 59 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPN 201 + I G++ ARVH+V+P+ + + +A+V I+ E IR +VA+++P Sbjct: 60 LAQIDGVLVARVHVVLPERIAPGEPVHPASAAVFIKYRAELEPDGMEQRIRRMVASSIPG 119 Query: 202 L 202 L Sbjct: 120 L 120 >gi|312912394|dbj|BAJ36368.1| needle complex inner membrane lipoprotein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] Length = 249 Score = 84.3 bits (207), Expect = 5e-14, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 71/184 (38%), Gaps = 6/184 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90 I+ FF+ + +LY L + N++ L + +ID ++G ++ V S Sbjct: 6 IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A L G P + ++F ++ ++ E I + + G++ Sbjct: 65 INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVI 123 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209 A+V I +P + + +V I+ ++ I+ L+ ++P L +++ Sbjct: 124 NAKVTIALPTYDE-GSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISI 182 Query: 210 LDST 213 L Sbjct: 183 LMQP 186 >gi|291086627|ref|ZP_06356294.2| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Citrobacter youngae ATCC 29220] gi|291067482|gb|EFE05591.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Citrobacter youngae ATCC 29220] Length = 247 Score = 83.9 bits (206), Expect = 6e-14, Method: Composition-based stats. Identities = 33/179 (18%), Positives = 73/179 (40%), Gaps = 5/179 (2%) Query: 51 LYVKLEVSDVNRISVALSEANIDF--RISDNG-SSISVPSSMVGKARIHLAAQGLPSSSS 107 LY L + N+++V L +ID +++ +G S+S+ + A L G P Sbjct: 24 LYDNLSQEEANQMAVLLLARHIDVDKKVNKDGLFSLSIDKADFASAVEILRLHGYPQKKY 83 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 S ++F + + + E + R + + G+++ RV I P Sbjct: 84 RSVEDVFPSDQ-LVTSPGQELSKIIYLKEQGLERMLADMDGVISTRVVIAQPLNTDDDAD 142 Query: 168 GARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN 225 A + +V I+ + + S I+ LV ++P+L ++++ + ++ + Sbjct: 143 KAMTSVAVFIKYAPENNLQNSLTQIKGLVHDSIPDLSYDKISIVLQPINYIKTTDVSAS 201 >gi|304414266|ref|ZP_07395634.1| needle complex inner membrane lipoprotein [Candidatus Regiella insecticola LSR1] gi|304283480|gb|EFL91876.1| needle complex inner membrane lipoprotein [Candidatus Regiella insecticola LSR1] Length = 243 Score = 83.5 bits (205), Expect = 8e-14, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 65/181 (35%), Gaps = 6/181 (3%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDNGSSI--SVPSSMV 90 + + +LY L + N + L NI + S+ G + V Sbjct: 7 GFMVLLILLSLTGCKVDLYNGLAEGEANEMLALLMLHNISANKESEKGGKVGLKVERDHF 66 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A L G P S + +LF + ++ V E ++ + + G++ Sbjct: 67 ITAVELLRQNGYPRKSYATVDQLFPSNQ-LVTSPVQEQAKMVYLKEQQLESMLSHMDGVI 125 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209 A V I M K+ +ASV I+ S + I+ LV AVP + ++V Sbjct: 126 HADVTIAMMAPVD-GKVSVPSSASVFIKFSPEVNLASYSPQIKSLVQDAVPGVAYEKISV 184 Query: 210 L 210 L Sbjct: 185 L 185 >gi|322615106|gb|EFY12029.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619948|gb|EFY16821.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622259|gb|EFY19104.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627781|gb|EFY24571.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322636635|gb|EFY33338.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641172|gb|EFY37814.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644893|gb|EFY41426.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322655844|gb|EFY52146.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660169|gb|EFY56408.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665264|gb|EFY61452.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669521|gb|EFY65669.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673447|gb|EFY69549.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677375|gb|EFY73439.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679962|gb|EFY76001.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687434|gb|EFY83406.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194114|gb|EFZ79313.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198594|gb|EFZ83695.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202920|gb|EFZ87955.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208640|gb|EFZ93578.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323217618|gb|EGA02333.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323218966|gb|EGA03476.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323229419|gb|EGA13542.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232642|gb|EGA16738.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240320|gb|EGA24364.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242691|gb|EGA26712.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323245903|gb|EGA29891.1| type III secretion system lipoprotein SsaJ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252467|gb|EGA36314.1| type III secretion system lipoprotein SsaJ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255110|gb|EGA38894.1| type III secretion system lipoprotein SsaJ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260049|gb|EGA43674.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267187|gb|EGA50672.1| type III secretion system lipoprotein SsaJ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271490|gb|EGA54911.1| type III secretion system lipoprotein SsaJ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 249 Score = 83.5 bits (205), Expect = 8e-14, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 71/184 (38%), Gaps = 6/184 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90 I+ FF+ + +LY L + N++ L + +ID ++G ++ V S Sbjct: 6 IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A L G P + ++F ++ ++ E I + + G++ Sbjct: 65 INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVI 123 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209 A+V I +P + + +V I+ ++ I+ L+ ++P L +++ Sbjct: 124 NAKVTIALPTYDE-GSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISI 182 Query: 210 LDST 213 L Sbjct: 183 LMQP 186 >gi|16760502|ref|NP_456119.1| pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141738|ref|NP_805080.1| pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213022228|ref|ZP_03336675.1| putative pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213584548|ref|ZP_03366374.1| putative pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213620458|ref|ZP_03373284.1| putative pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647278|ref|ZP_03377331.1| putative pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213859469|ref|ZP_03385173.1| putative pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289826228|ref|ZP_06545340.1| putative pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25512033|pir||AC0698 probable pathogenicity island lipoprotein ssaJ [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502798|emb|CAD01956.1| putative pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Typhi] gi|29137366|gb|AAO68929.1| putative pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 249 Score = 83.5 bits (205), Expect = 9e-14, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 71/184 (38%), Gaps = 6/184 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90 I+ FF+ + +LY L + N++ L + +ID ++G ++ V S Sbjct: 6 IIFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A L G P + ++F ++ ++ E I + + G++ Sbjct: 65 INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVI 123 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209 A+V I +P + + +V I+ ++ I+ L+ ++P L +++ Sbjct: 124 NAKVTIALPTYDE-GSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISI 182 Query: 210 LDST 213 L Sbjct: 183 LMQP 186 >gi|16764759|ref|NP_460374.1| needle complex inner membrane lipoprotein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167995043|ref|ZP_02576133.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|3024642|sp|P74852|SSAJ_SALTY RecName: Full=Secretion system apparatus lipoprotein ssaJ; Flags: Precursor gi|1669745|emb|CAA70532.1| secretion system apparatus [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16419930|gb|AAL20333.1| secretion system apparatus protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205327210|gb|EDZ13974.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261246615|emb|CBG24425.1| putative pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993298|gb|ACY88183.1| needle complex inner membrane lipoprotein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157944|emb|CBW17439.1| putative pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|323129681|gb|ADX17111.1| needle complex inner membrane lipoprotein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988296|gb|AEF07279.1| needle complex inner membrane lipoprotein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 249 Score = 83.5 bits (205), Expect = 9e-14, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 71/184 (38%), Gaps = 6/184 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90 I+ FF+ + +LY L + N++ L + +ID ++G ++ V S Sbjct: 6 IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A L G P + ++F ++ ++ E I + + G++ Sbjct: 65 INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVI 123 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209 A+V I +P + + +V I+ ++ I+ L+ ++P L +++ Sbjct: 124 NAKVTIALPTYDE-GSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISI 182 Query: 210 LDST 213 L Sbjct: 183 LMQP 186 >gi|62180000|ref|YP_216417.1| secretion system apparatus SsaJ [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|168240922|ref|ZP_02665854.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168263759|ref|ZP_02685732.1| secretion system apparatus SsaJ [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168463181|ref|ZP_02697112.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194446558|ref|YP_002040661.1| type III secretion apparatus lipoprotein YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449848|ref|YP_002045412.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197263539|ref|ZP_03163613.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|200389425|ref|ZP_03216036.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|62127633|gb|AAX65336.1| Secretion system apparatus SsaJ [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194405221|gb|ACF65443.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408152|gb|ACF68371.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195634338|gb|EDX52690.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197241794|gb|EDY24414.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|199601870|gb|EDZ00416.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205339355|gb|EDZ26119.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205347655|gb|EDZ34286.1| secretion system apparatus SsaJ [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|322714467|gb|EFZ06038.1| secretion system apparatus SsaJ [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 249 Score = 83.1 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 71/184 (38%), Gaps = 6/184 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90 I+ FF+ + +LY L + N++ L + +ID ++G ++ V S Sbjct: 6 IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A L G P + ++F ++ ++ E I + + G++ Sbjct: 65 INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVI 123 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209 A+V I +P + + +V I+ ++ I+ L+ ++P L +++ Sbjct: 124 NAKVTIALPTYDE-GSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISI 182 Query: 210 LDST 213 L Sbjct: 183 LMQP 186 >gi|313634363|gb|EFS00960.1| flagellar M-ring protein FliF [Listeria seeligeri FSL N1-067] gi|313639038|gb|EFS04028.1| flagellar M-ring protein FliF [Listeria seeligeri FSL S4-171] Length = 160 Score = 83.1 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 68/160 (42%), Gaps = 13/160 (8%) Query: 15 TSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-NLYVKLEVSDVNRISVALSEANID 73 + L + + V + +F+ ++N+P + LY L + +++ L++ +D Sbjct: 9 SKLKNWHKGAIFVGLFVVVTVFL---LYLNTPKTEITLYKNLSETSQQQVTDQLAKMGVD 65 Query: 74 FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 + + +G+ I V + R A G+P + + L +S G + +++ Sbjct: 66 YTVDKSGN-ILVDEKVETLVRDKFADLGIPYTGQDGNDILL--NSSLGASEEDKKMQEKV 122 Query: 134 A----LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA 169 LE EI ++ + + +A V + +P+ S + + Sbjct: 123 GTKVNLEKEIVQSYGT--TVDSASVQLTLPESSSIFEEAS 160 >gi|198244261|ref|YP_002215722.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197938777|gb|ACH76110.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 249 Score = 83.1 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 71/184 (38%), Gaps = 6/184 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90 I+ FF+ + +LY L + N++ L + +ID ++G ++ V S Sbjct: 6 IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A L G P + ++F ++ ++ E I + + G++ Sbjct: 65 INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVI 123 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209 A+V I +P + + +V I+ ++ I+ L+ ++P L +++ Sbjct: 124 NAKVTIALPTYDE-GSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISI 182 Query: 210 LDST 213 L Sbjct: 183 LMQP 186 >gi|56413620|ref|YP_150695.1| pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|167551622|ref|ZP_02345376.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168822279|ref|ZP_02834279.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|197362544|ref|YP_002142181.1| pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|207857085|ref|YP_002243736.1| pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|56127877|gb|AAV77383.1| putative pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094021|emb|CAR59517.1| putative pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205323639|gb|EDZ11478.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205341290|gb|EDZ28054.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206708888|emb|CAR33218.1| putative pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|320086111|emb|CBY95885.1| Secretion system apparatus lipoprotein ssaJ Flags: Precursor [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 249 Score = 83.1 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 71/184 (38%), Gaps = 6/184 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90 I+ FF+ + +LY L + N++ L + +ID ++G ++ V S Sbjct: 6 IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A L G P + ++F ++ ++ E I + + G++ Sbjct: 65 INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVI 123 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209 A+V I +P + + +V I+ ++ I+ L+ ++P L +++ Sbjct: 124 NAKVTIALPTYDE-GSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISI 182 Query: 210 LDST 213 L Sbjct: 183 LMQP 186 >gi|168239293|ref|ZP_02664351.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194736650|ref|YP_002114422.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194712152|gb|ACF91373.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288000|gb|EDY27387.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 249 Score = 82.8 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 71/184 (38%), Gaps = 6/184 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90 I+ FF+ + +LY L + N++ L + +ID ++G ++ V S Sbjct: 6 IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A L G P + ++F ++ ++ E I + + G++ Sbjct: 65 INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVI 123 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209 A+V I +P + + +V I+ ++ I+ L+ ++P L +++ Sbjct: 124 NAKVTIALPTYDE-GSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISI 182 Query: 210 LDST 213 L Sbjct: 183 LMQP 186 >gi|108759060|ref|YP_630659.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Myxococcus xanthus DK 1622] gi|108462940|gb|ABF88125.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Myxococcus xanthus DK 1622] Length = 272 Score = 82.8 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 41/167 (24%), Positives = 70/167 (41%), Gaps = 13/167 (7%) Query: 55 LEVSDVNRISVALSEANIDFRIS--DNGS----SISVPSSMVGKARIHLAAQGLPSSSSN 108 L +D N I V LS+ I+ + + G+ I+VP + +A L LP Sbjct: 29 LSEADANEIYVLLSKNGINAKKEKEEGGNEVRFMITVPKADAAQAAELLKLNSLPRPVEK 88 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 S T+ + ++A+ GE++ + I G++ AR +++P+ + Sbjct: 89 GLAHF--AKGSMVPTATEERAMLLKAMGGEVSNALNQIDGVLEARAIVMIPENNDLTQPE 146 Query: 169 AR--PTASVMIRAINPSVYK---SAEAIRHLVAAAVPNLDMGDVTVL 210 + P+ASV I+ K ++ A AVP L VTVL Sbjct: 147 NKPMPSASVFIKYRPGEGGKPPIDTAVVQQFAATAVPELKASAVTVL 193 >gi|168233604|ref|ZP_02658662.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194471741|ref|ZP_03077725.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197247506|ref|YP_002146633.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|204927796|ref|ZP_03218997.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|194458105|gb|EDX46944.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197211209|gb|ACH48606.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|204323138|gb|EDZ08334.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205332334|gb|EDZ19098.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 249 Score = 82.8 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 71/184 (38%), Gaps = 6/184 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90 I+ FF+ + +LY L + N++ L + +ID ++G ++ V S Sbjct: 6 IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A L G P + ++F ++ ++ E I + + G++ Sbjct: 65 INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVI 123 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209 A+V I +P + + +V I+ ++ I+ L+ ++P L +++ Sbjct: 124 NAKVTIALPTYDE-GSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISI 182 Query: 210 LDST 213 L Sbjct: 183 LMQP 186 >gi|284007385|emb|CBA72784.1| Type III secretion bridge between inner and outermembrane lipoprotein YscJ,HrcJ,EscJ, PscJ [Arsenophonus nasoniae] Length = 263 Score = 82.4 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 73/192 (38%), Gaps = 6/192 (3%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANID-FRISD--NGSSISVPSSMVGKARIHLAAQGLP 103 + L L+ + N + L + NID ++ +G I + A + GLP Sbjct: 19 NQQELLKNLDQNQANEVIALLQQNNIDAYKKESAKSGYIIYIEKEDFIPAVDLINRYGLP 78 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 ++F S + ++ +E +A+++ SI GIV A VHI Sbjct: 79 RKPRLEIAQMFPSD-SLVSSPLAEKARLYSGIEQRLAQSLHSIEGIVTAHVHISYELNSL 137 Query: 164 FRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE 221 K + S +I+ + V I+ + +V + D++V+ + + + + Sbjct: 138 ENKKEHKYHVSALIKYNDTIKDVNLLINDIKRFLKNSVNGVSYDDISVVTTEMEQINRLK 197 Query: 222 MERNILGKSLSI 233 N G + S Sbjct: 198 SISNHQGTTSSF 209 >gi|238913187|ref|ZP_04657024.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 249 Score = 82.0 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 71/184 (38%), Gaps = 6/184 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90 I+ FF+ + +LY L + N++ L + +ID ++G ++ V S Sbjct: 6 IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A L G P + ++F ++ ++ E I + + G++ Sbjct: 65 INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPLEEQQKINFLKEQRIEGMLSQMEGVI 123 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209 A+V I +P + + +V I+ ++ I+ L+ ++P L +++ Sbjct: 124 NAKVTIALPTYDE-GSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISI 182 Query: 210 LDST 213 L Sbjct: 183 LMQP 186 >gi|205352875|ref|YP_002226676.1| pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205272656|emb|CAR37566.1| putative pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|309243403|gb|ADO51979.1| SsaJ [Salmonella enterica subsp. enterica serovar Gallinarum] gi|326627947|gb|EGE34290.1| putative pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 249 Score = 82.0 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 71/184 (38%), Gaps = 6/184 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90 I+ FF+ + +LY L + N++ L + +ID ++G ++ V S Sbjct: 6 IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A L G P + ++F ++ ++ E I + + G++ Sbjct: 65 INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVI 123 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209 A+V I +P + + +V I+ ++ I+ L+ ++P L +++ Sbjct: 124 NAKVTIALPTYDE-GSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISL 182 Query: 210 LDST 213 L Sbjct: 183 LMQP 186 >gi|315301965|ref|ZP_07872961.1| flagellar M-ring protein FliF [Listeria ivanovii FSL F6-596] gi|313629672|gb|EFR97809.1| flagellar M-ring protein FliF [Listeria ivanovii FSL F6-596] Length = 159 Score = 81.6 bits (200), Expect = 3e-13, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 66/158 (41%), Gaps = 13/158 (8%) Query: 15 TSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-NLYVKLEVSDVNRISVALSEANID 73 + L + + V + +F+ ++N P + LY L + +++ L++ +D Sbjct: 9 SKLKNWHKGAIFVGLFVVVTVFL---LYLNMPKTEITLYKNLSETSQQQVTDQLAKMGVD 65 Query: 74 FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 + + +G+ I V + R A G+P + + L +S G + +++ Sbjct: 66 YTVDKSGN-ILVDEKVETLVRDKFADLGIPYTGQDGNDILL--NSSLGASEEDKKMQEKV 122 Query: 134 A----LEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 LE EI ++ + + +A V + +P+ S + Sbjct: 123 GTKVNLEKEIVQSYGT--TVDSASVQLTLPESSSIFEE 158 >gi|71042041|pdb|1YJ7|A Chain A, Crystal Structure Of Enteropathogenic E.Coli (Epec) Type Iii Secretion System Protein Escj gi|71042042|pdb|1YJ7|B Chain B, Crystal Structure Of Enteropathogenic E.Coli (Epec) Type Iii Secretion System Protein Escj gi|71042043|pdb|1YJ7|C Chain C, Crystal Structure Of Enteropathogenic E.Coli (Epec) Type Iii Secretion System Protein Escj gi|71042044|pdb|1YJ7|D Chain D, Crystal Structure Of Enteropathogenic E.Coli (Epec) Type Iii Secretion System Protein Escj Length = 171 Score = 81.6 bits (200), Expect = 3e-13, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 69/164 (42%), Gaps = 10/164 (6%) Query: 51 LYVKLEVSDVNRISVALSEA--NIDFRISDNGS-SISVPSSMVGKARIHLAAQGLPSSSS 107 LY L + N++ L N+ + +G+ ++SV ++ +A L G P Sbjct: 5 LYTGLTEKEANQMQALLLSNDVNVSKEMDKSGNMTLSVAAADFVRAITILNNNGFPKKKF 64 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 + E+ + + + E +I R + I G++ V + + + Sbjct: 65 -ADIEVIFPPSQLVASPSQENAKINYLKEQDIERLLSKIPGVIDCSVSLNVNNN-----E 118 Query: 168 GARPTASVMIRAINP-SVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 +A+V++ + ++ S I++LV +V +L + +++V+ Sbjct: 119 SQPSSAAVLVISSPEVNLAPSVIQIKNLVKNSVDDLKLENISVV 162 >gi|330940717|gb|EGH43725.1| flagellar MS-ring protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 104 Score = 81.6 bits (200), Expect = 3e-13, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 35/81 (43%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 + F ++ + + R + L + + + A + P Y LY L D +I L Sbjct: 24 MSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83 Query: 68 SEANIDFRISDNGSSISVPSS 88 + ANI++ + N ++ V S Sbjct: 84 TAANINYTVEPNSGALLVKSD 104 >gi|308126335|ref|ZP_07663715.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio parahaemolyticus AQ4037] gi|308110706|gb|EFO48246.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio parahaemolyticus AQ4037] Length = 190 Score = 81.2 bits (199), Expect = 4e-13, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 3/129 (2%) Query: 84 SVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTI 143 V SS + A L +G P ++ E+F K + + + V A E++ T+ Sbjct: 2 MVDSSQIAFAVDALKRKGYPREQFSTLKEVFPKDD-LISSPLAERARLVYAKSQELSSTL 60 Query: 144 QSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPN 201 I G++ ARVH+V+ D + +ASV I+ S I+ LV ++ Sbjct: 61 SQIDGVLVARVHVVLEDQDLRPGERPTPASASVFIKHAADVALDSYVPQIKLLVNNSIEG 120 Query: 202 LDMGDVTVL 210 L+ ++V+ Sbjct: 121 LNYDRISVV 129 >gi|291562020|emb|CBL40835.1| Flagellar biosynthesis/type III secretory pathway lipoprotein [butyrate-producing bacterium SS3/4] Length = 110 Score = 80.8 bits (198), Expect = 5e-13, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 40/102 (39%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + L + ++ + I ++A+ ++ + Y L+ + D + Sbjct: 5 VQNLKEAWQKMPGKTKKMIAVIAAGTIILAAAGLLVLNIGTKKGYSTLFTGMSSDDAQAV 64 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSS 105 L + +D+R +D S+ V S V K R L ++G P Sbjct: 65 VSLLQDEGVDYRYNDKNGSVQVMSDTVDKTRAELLSKGYPKK 106 >gi|238897378|ref|YP_002923055.1| needle complex inner membrane lipoprotein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465133|gb|ACQ66907.1| needle complex inner membrane lipoprotein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 249 Score = 80.8 bits (198), Expect = 6e-13, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 83/227 (36%), Gaps = 10/227 (4%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG-SSISVPSSMVG- 91 + ++ S LY L S+ N++ L +I+ N +++V Sbjct: 7 IFYIFLIILSLSACNVQLYSGLAQSEANQMLALLMLHHINAEKQQNKDGTVTVNVDRKHF 66 Query: 92 -KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A L G P + + ++F + ++ V E ++ + + G++ Sbjct: 67 IDAVELLRQNGFPRRNYVTVDKIFPSNQ-LVTSPGQEQAKMVYIKEQQLESMLSHMEGVI 125 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVTV 209 V I + + K +ASV ++ + ++ I++L+ A+P +D +++ Sbjct: 126 RVDVSIAVAAPSN-DKNMNPSSASVFMKYSPEINLEIYQSQIKNLIHDAIPGIDYSKISI 184 Query: 210 LDSTGKLLTANE--MERNILGKSLSIVQAIQHEIE--MNINKALAAF 252 L + E + L K A++ +E I LA Sbjct: 185 LMQPANFRFTPKKITEADNLQKQEQSHSALEWLLEHIKVIQMILAGL 231 >gi|3776130|emb|CAA12196.1| SsaJ [Salmonella typhimurium] Length = 189 Score = 80.5 bits (197), Expect = 7e-13, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 71/184 (38%), Gaps = 6/184 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90 I+ FF+ + +LY L + N++ L + +ID ++G ++ V S Sbjct: 6 IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A L G P + ++F ++ ++ E I + + G++ Sbjct: 65 INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVI 123 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209 A+V I +P + + +V I+ ++ I+ L+ ++P L +++ Sbjct: 124 NAKVTIALPTYDE-GSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISI 182 Query: 210 LDST 213 L Sbjct: 183 LMQP 186 >gi|321224033|gb|EFX49096.1| Secretion system apparatus SsaJ [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 229 Score = 79.7 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 64/166 (38%), Gaps = 5/166 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108 LY L + N++ L + +ID ++G ++ V S A L G P Sbjct: 3 LYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQFINAVELLRLNGYPHRQFT 62 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 + ++F ++ ++ E I + + G++ A+V I +P Sbjct: 63 TADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVINAKVTIALPTYDE-GSNA 120 Query: 169 ARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVLDST 213 + + +V I+ ++ I+ L+ ++P L +++L Sbjct: 121 SPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISILMQP 166 >gi|330953274|gb|EGH53534.1| type III secretion component [Pseudomonas syringae Cit 7] Length = 130 Score = 79.7 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 55/136 (40%), Gaps = 11/136 (8%) Query: 20 TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RIS 77 R +L +I+ + + A +LY L + N + L I ++ Sbjct: 3 KRCRVLRLLIVAALASLLQACDI-------DLYTNLGEREANAMLAVLLRDGIPASRKVQ 55 Query: 78 DNGS-SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136 DNG + V +A L GLP S ++ E+F K N + + V AL Sbjct: 56 DNGQLKVMVDEKRFAEAMAALDDAGLPGQSFSNMGEVF-KGNGLVSSPVQERAQMVYALS 114 Query: 137 GEIARTIQSISGIVAA 152 E++ T+ I GI++A Sbjct: 115 EELSHTVSQIDGILSA 130 >gi|161614174|ref|YP_001588139.1| hypothetical protein SPAB_01916 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|224584080|ref|YP_002637878.1| pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|161363538|gb|ABX67306.1| hypothetical protein SPAB_01916 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|224468607|gb|ACN46437.1| putative pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 229 Score = 79.7 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 64/166 (38%), Gaps = 5/166 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108 LY L + N++ L + +ID ++G ++ V S A L G P Sbjct: 3 LYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQFINAVELLRLNGYPHRQFT 62 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 + ++F ++ ++ E I + + G++ A+V I +P Sbjct: 63 TADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVINAKVTIALPTYDE-GSNA 120 Query: 169 ARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVLDST 213 + + +V I+ ++ I+ L+ ++P L +++L Sbjct: 121 SPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISILMQP 166 >gi|326623470|gb|EGE29815.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 229 Score = 79.7 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 64/166 (38%), Gaps = 5/166 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108 LY L + N++ L + +ID ++G ++ V S A L G P Sbjct: 3 LYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQFINAVELLRLNGYPHRQFT 62 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 + ++F ++ ++ E I + + G++ A+V I +P Sbjct: 63 TADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVINAKVTIALPTYDE-GSNA 120 Query: 169 ARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVLDST 213 + + +V I+ ++ I+ L+ ++P L +++L Sbjct: 121 SPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISILMQP 166 >gi|226313069|ref|YP_002772963.1| flagellar M-ring protein [Brevibacillus brevis NBRC 100599] gi|226096017|dbj|BAH44459.1| probable flagellar M-ring protein [Brevibacillus brevis NBRC 100599] Length = 298 Score = 79.3 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 52/335 (15%), Positives = 108/335 (32%), Gaps = 44/335 (13%) Query: 225 NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD-PDSK 283 + + +I ++ +I+ N+ L +G D ++N D + E + + PD + Sbjct: 2 SSFKQQETIKADVEKKIQQNLYNLLGTIMGRDKVIVHTFLKMNFDKENRVENIVEAPDKE 61 Query: 284 VERSIRLSKDAQR---SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEI 340 + +S S QP + N + S ++ + N E+ Sbjct: 62 NNEGLIISSQKLSKAFSGQGQPPGGIAGTNNNAVTNYPGATPQGSNSQYEELNDTINREV 121 Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400 N + T YK+E ++I V V G + D ++S + +V Sbjct: 122 NRITRNVTSSPYKIEDITINVGV-----EPPAGGTLDAATLESIKQVLRNVVRVTL---- 172 Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFM--DILSRHFATVINALVFLVGTLLVTFLGLH 458 D +T D + +L +V + + A+++ VG + V L Sbjct: 173 --SDQVT----DLSDTELDKHISVLPRQFSGKAEIEDSSALSPAVLWTVGGIAVLALAAV 226 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A AK+ + + PP+++ L+ ++ Sbjct: 227 AFLVYRRRSQAKQQQEEEELPDLLPPLNAGEIPDLIYQEDG------------------- 267 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 +L + + F +LR W + Sbjct: 268 ----DQVVVRKQLEKLARSKPDEFVVLLRTWLAED 298 >gi|124382226|ref|YP_001025747.1| type III secretion inner membrane protein SctJ [Burkholderia mallei NCTC 10229] Length = 174 Score = 76.6 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 T + + + + E++ T+ I G+V ARVHIV+P+ ++ +ASV I+ Sbjct: 1 MSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPLAQVAKPSSASVFIKYR 60 Query: 181 NPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 + + I++LV +V L +V+V Sbjct: 61 PNANLATLTPQIKNLVVHSVEGLTYDEVSVT 91 >gi|238757855|ref|ZP_04619037.1| Secretion system apparatus lipoprotein ssaJ [Yersinia aldovae ATCC 35236] gi|238703840|gb|EEP96375.1| Secretion system apparatus lipoprotein ssaJ [Yersinia aldovae ATCC 35236] Length = 233 Score = 76.6 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 62/168 (36%), Gaps = 5/168 (2%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 +LY L D N++ L + NID ++ G ++ V + A L G P S Sbjct: 15 VDLYSALPEEDANQMLAILMQHNIDADKQLVAGGVTLRVEKAQFINAVELLRLNGFPRRS 74 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 S +F ++ ++ + E I + + G+V V I Sbjct: 75 YISADTMFPPNQ-LVVSPAEEQQKILFLKEQRIENMLSQMDGVVHVDVTIASSGPDE-EG 132 Query: 167 IGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVLDST 213 + + +V I+ + I++LV ++P + +++L Sbjct: 133 ATGQTSVAVFIKFWAQVNLVALRVQIKNLVEKSIPGVQQDQISILMQP 180 >gi|207110812|ref|ZP_03244974.1| flagellar MS-ring protein [Helicobacter pylori HPKX_438_CA4C1] Length = 82 Score = 76.2 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 2/78 (2%) Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLD 203 ++ I+ A VHI +P F P+ASVM++ I++L+AAAVP L Sbjct: 1 LNPILKANVHIAIPKDSVFVAKEVPPSASVMLKLKPDMKLSPTQILGIKNLIAAAVPKLT 60 Query: 204 MGDVTVLDSTGKLLTANE 221 +V +++ G+ + + Sbjct: 61 TENVKIVNENGESIGEGD 78 >gi|294636868|ref|ZP_06715199.1| flagellar M-ring protein [Edwardsiella tarda ATCC 23685] gi|291089917|gb|EFE22478.1| flagellar M-ring protein [Edwardsiella tarda ATCC 23685] Length = 156 Score = 76.2 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 62/178 (34%), Gaps = 27/178 (15%) Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDF---LENQLFNSGTVQVSFMDILSRH 435 + +IN +V A G + RGDT+++ + F +N + +F+D+LS Sbjct: 1 ALSQEKMDQINNLVREAMGFSQNRGDTLSVVNTPFNSVADNGGELPFWQKQAFIDLLSTL 60 Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495 ++ ALV R+L K+ + P Sbjct: 61 GRYLLVALV-----------AWLLWRKLVKPMLTKQQQAAALRQQVNTS----------P 99 Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + + + R LQ R + + R+ M E + A ++R+W +E Sbjct: 100 ISAQPVKQPSNEELQQRRKLQQRTTAEAQTE---RVREMAEQDPRVVALVIRQWMSTE 154 >gi|85058534|ref|YP_454236.1| putative type III secretion apparatus [Sodalis glossinidius str. 'morsitans'] gi|45504742|gb|AAS66833.1| YsaJ [Sodalis glossinidius] gi|84779054|dbj|BAE73831.1| putative type III secretion apparatus [Sodalis glossinidius str. 'morsitans'] Length = 259 Score = 74.7 bits (182), Expect = 4e-11, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 70/186 (37%), Gaps = 6/186 (3%) Query: 30 LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS---DNGSSISVP 86 L+ + + A L L N++ L + NI + S G +I+VP Sbjct: 5 LLLTCMVIIAALLTTGCDNTILLNNLSQEQANKVLAVLQQHNIASQKSGSLKEGYAITVP 64 Query: 87 SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146 S A L LP+ + F N+ + + + E + ++++ I Sbjct: 65 KSDTTTALSILNQYQLPAKPEVQISQAFP-DNALIASPQAERARMLSLQEQRLEQSLKII 123 Query: 147 SGIVAARVHIVMP-DMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDM 204 S +V ARVH+ P + +F S++I I+ L+ + N+ Sbjct: 124 SQVVNARVHVSYPLNDNTFITDPPAERVSILITYSGSLNENMFISKIKTLIKNGLANVRF 183 Query: 205 GDVTVL 210 D++V+ Sbjct: 184 EDISVV 189 >gi|161503496|ref|YP_001570608.1| hypothetical protein SARI_01572 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864843|gb|ABX21466.1| hypothetical protein SARI_01572 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 249 Score = 74.3 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 65/168 (38%), Gaps = 5/168 (2%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 +LY L + N++ L + +I+ +NG ++ V S A L G P Sbjct: 21 VDLYRSLPEDEANQMLALLMQHHINAEKKQEENGITLRVEQSQFINAVELLRLNGYPHRQ 80 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + ++F ++ ++ E I + + G++ +V I +P Sbjct: 81 FMTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVINTKVTIALPIYDE-GS 138 Query: 167 IGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVLDST 213 + + +V I+ ++ I+ L+ ++P L G +++L Sbjct: 139 NYSPSSVAVFIKYSPQVNMEALRIKIKDLIEKSIPGLQYGRISILMQP 186 >gi|255022494|ref|ZP_05294480.1| flagellar MS-ring protein [Listeria monocytogenes FSL J1-208] Length = 160 Score = 74.3 bits (181), Expect = 5e-11, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 60/134 (44%), Gaps = 10/134 (7%) Query: 42 FVNSPHYDN-LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 ++N+P + LY L + +++ L++ +D+ I +G+ I V + R A Sbjct: 27 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTIDKSGN-ILVDEKVETLVRDKFADL 85 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA----LEGEIARTIQSISGIVAARVHI 156 G+P + + L +S G + +++ LE EI ++ + I +A V + Sbjct: 86 GIPYTGQDGNDILL--NSSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TIDSASVQL 141 Query: 157 VMPDMGSFRKIGAR 170 +P+ S + ++ Sbjct: 142 TLPESSSIFEEASQ 155 >gi|330903893|gb|EGH34465.1| flagellar MS-ring protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 100 Score = 74.3 bits (181), Expect = 5e-11, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 3/99 (3%) Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKK--EEQSNYEINTKSIATTHDNYKLERLSIA 360 ++ N + D P K + N+E++ T +L RLS+A Sbjct: 2 PGQPLLDANGQQIMDPATGQPALAPYPADKRVQSTKNFELDRSISHTKQQQGRLTRLSVA 61 Query: 361 VVVNK-GRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 VVV+ + G + + LA ++V A G Sbjct: 62 VVVDDMVKTNAANGEVSRAPWSAADLARFTRLVQDAVGF 100 >gi|226326448|ref|ZP_03801966.1| hypothetical protein PROPEN_00296 [Proteus penneri ATCC 35198] gi|225205231|gb|EEG87585.1| hypothetical protein PROPEN_00296 [Proteus penneri ATCC 35198] Length = 248 Score = 74.3 bits (181), Expect = 5e-11, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 73/183 (39%), Gaps = 8/183 (4%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSM 89 ++LF L L ++ L + I + G +SV Sbjct: 1 MLLFCLVSLLTGCKEQSLL-TGLNQRQATQVQAVLQKHQITSTQTALGKGLFDVSVKKED 59 Query: 90 VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149 V A L LPS++ ++F + + ++ + A+E + +++ +I + Sbjct: 60 VAVAIQILEQYQLPSNTRVEITQIFPSD-ALVSSPQAEKARLISAIEQRLEQSLLTIESV 118 Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDV 207 + ARVHI P + +I P AS +I + P + E +R + + +++ ++ Sbjct: 119 IDARVHISYP-ISPSERIIPPPHASAIIFYEDSVPDAEQLGEDVRAFIHNSFNDMNEDNI 177 Query: 208 TVL 210 TVL Sbjct: 178 TVL 180 >gi|161502085|ref|YP_001569197.1| hypothetical protein SARI_00102 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863432|gb|ABX20055.1| hypothetical protein SARI_00102 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 252 Score = 73.1 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 67/168 (39%), Gaps = 12/168 (7%) Query: 51 LYVKLEVSDVNRISVALSEANIDF-RISDN--GSSISVPSSMVGKARIHLAAQGLPSSSS 107 L L+ N + L NI+ +I G SI+V A + LP Sbjct: 23 LLKGLDQEQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAAVYWIKTYQLPPRPR 82 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 ++F S + ++ A+E + +++Q++ G+++ARVHI + Sbjct: 83 VEIAQMFPAD-SLVSSPRAEKARLYSAIEQRLEQSLQTMEGVLSARVHISYDIDA--GEN 139 Query: 168 GARP-----TASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 G P +A + +P + I+ + + ++D +++V+ Sbjct: 140 GRPPKPVHLSALAVYERGSPLAH-QISDIKRFLKNSFADVDYDNISVV 186 >gi|197249815|ref|YP_002147769.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197213518|gb|ACH50915.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 252 Score = 72.7 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 67/168 (39%), Gaps = 12/168 (7%) Query: 51 LYVKLEVSDVNRISVALSEANIDF-RISDN--GSSISVPSSMVGKARIHLAAQGLPSSSS 107 L L+ N + L NI+ +I G SI+V A + LP Sbjct: 23 LLKGLDQEQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAAVYWIKTYQLPPRPR 82 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 ++F S + ++ A+E + +++Q++ G+++ARVHI + Sbjct: 83 VEIAQMFPAD-SLVSSPRAEKARLYSAIEQRLEQSLQTMEGVLSARVHISYDIDA--GEN 139 Query: 168 GARP-----TASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 G P +A + +P + I+ + + ++D +++V+ Sbjct: 140 GRPPKPVHLSALAVYERGSPLAH-QISDIKRFLKNSFADVDYDNISVV 186 >gi|16766177|ref|NP_461792.1| needle complex inner membrane lipoprotein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56414823|ref|YP_151898.1| pathogenicity island 1 effector protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62181373|ref|YP_217790.1| cell invasion protein; lipoprotein, may link inner and outer membranes [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161615781|ref|YP_001589746.1| hypothetical protein SPAB_03572 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167550282|ref|ZP_02344039.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167994182|ref|ZP_02575274.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168230939|ref|ZP_02655997.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168235909|ref|ZP_02660967.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168242607|ref|ZP_02667539.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168262008|ref|ZP_02683981.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168463996|ref|ZP_02697913.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168820434|ref|ZP_02832434.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194446696|ref|YP_002042114.1| type III secretion apparatus lipoprotein YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451609|ref|YP_002046834.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472324|ref|ZP_03078308.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194737310|ref|YP_002115824.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197262326|ref|ZP_03162400.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197363751|ref|YP_002143388.1| pathogenicity island 1 effector protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198244869|ref|YP_002216842.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388692|ref|ZP_03215304.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204928364|ref|ZP_03219564.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353815|ref|YP_002227616.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858134|ref|YP_002244785.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224584649|ref|YP_002638447.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238909638|ref|ZP_04653475.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|1172615|sp|P41786|PRGK_SALTY RecName: Full=Lipoprotein prgK; Flags: Precursor gi|717103|gb|AAB60191.1| PrgK protein [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16421418|gb|AAL21751.1| cell invasion protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56129080|gb|AAV78586.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62129006|gb|AAX66709.1| cell invasion protein; lipoprotein, may link inner and outer membranes [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161365145|gb|ABX68913.1| hypothetical protein SPAB_03572 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194405359|gb|ACF65581.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194409913|gb|ACF70132.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458688|gb|EDX47527.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194712812|gb|ACF92033.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195633338|gb|EDX51752.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197095228|emb|CAR60779.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197240581|gb|EDY23201.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197290699|gb|EDY30053.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197939385|gb|ACH76718.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605790|gb|EDZ04335.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204322686|gb|EDZ07883.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205273596|emb|CAR38583.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205324687|gb|EDZ12526.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205327955|gb|EDZ14719.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205334572|gb|EDZ21336.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205338256|gb|EDZ25020.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205342832|gb|EDZ29596.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349248|gb|EDZ35879.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709937|emb|CAR34291.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224469176|gb|ACN47006.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261248007|emb|CBG25840.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994999|gb|ACY89884.1| needle complex inner membrane lipoprotein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159431|emb|CBW18949.1| type III secretion system apparatus [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913889|dbj|BAJ37863.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087276|emb|CBY97041.1| Lipoprotein prgK Flags: Precursor [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321223420|gb|EFX48486.1| Type III secretion bridge between inner and outermembrane lipoprotein YscJ,HrcJ,EscJ, PscJ [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322614310|gb|EFY11241.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621625|gb|EFY18478.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624486|gb|EFY21319.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628817|gb|EFY25600.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633456|gb|EFY30198.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635968|gb|EFY32676.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639676|gb|EFY36361.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646857|gb|EFY43360.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650626|gb|EFY47031.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654761|gb|EFY51080.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658981|gb|EFY55234.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664452|gb|EFY60646.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668299|gb|EFY64456.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673721|gb|EFY69822.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677782|gb|EFY73845.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681388|gb|EFY77420.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322683790|gb|EFY79800.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715857|gb|EFZ07428.1| needle complex inner membrane lipoprotein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323131223|gb|ADX18653.1| needle complex inner membrane lipoprotein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323193821|gb|EFZ79024.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200291|gb|EFZ85373.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203206|gb|EFZ88235.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205547|gb|EFZ90512.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210058|gb|EFZ94961.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216361|gb|EGA01088.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221108|gb|EGA05539.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226930|gb|EGA11112.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230786|gb|EGA14904.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234863|gb|EGA18949.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238902|gb|EGA22952.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241602|gb|EGA25633.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248251|gb|EGA32187.1| type III secretion system lipoprotein PrgK [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251165|gb|EGA35038.1| type III secretion system lipoprotein PrgK [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256049|gb|EGA39787.1| type III secretion system lipoprotein PrgK [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263183|gb|EGA46721.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264313|gb|EGA47819.1| type III secretion system lipoprotein PrgK [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271139|gb|EGA54567.1| type III secretion system lipoprotein PrgK [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624602|gb|EGE30947.1| needle complex inner membrane lipoprotein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628923|gb|EGE35266.1| needle complex inner membrane lipoprotein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332989743|gb|AEF08726.1| needle complex inner membrane lipoprotein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 252 Score = 72.7 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 67/168 (39%), Gaps = 12/168 (7%) Query: 51 LYVKLEVSDVNRISVALSEANIDF-RISDN--GSSISVPSSMVGKARIHLAAQGLPSSSS 107 L L+ N + L NI+ +I G SI+V A + LP Sbjct: 23 LLKGLDQEQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAAVYWIKTYQLPPRPR 82 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 ++F S + ++ A+E + +++Q++ G+++ARVHI + Sbjct: 83 VEIAQMFPAD-SLVSSPRAEKARLYSAIEQRLEQSLQTMEGVLSARVHISYDIDA--GEN 139 Query: 168 GARP-----TASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 G P +A + +P + I+ + + ++D +++V+ Sbjct: 140 GRPPKPVHLSALAVYERGSPLAH-QISDIKRFLKNSFADVDYDNISVV 186 >gi|218988933|gb|ACL13596.1| lipoprotein PrgK [Salmonella enterica subsp. salamae serovar Sofia] Length = 252 Score = 72.7 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 67/168 (39%), Gaps = 12/168 (7%) Query: 51 LYVKLEVSDVNRISVALSEANIDF-RISDN--GSSISVPSSMVGKARIHLAAQGLPSSSS 107 L L+ N + L NI+ +I G SI+V A + LP Sbjct: 23 LLKGLDQEQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAAVYWIKTYQLPPRPR 82 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 ++F S + ++ A+E + +++Q++ G+++ARVHI + Sbjct: 83 VEIAQMFPAD-SLVSSPRAEKARLYSAIEQRLEQSLQTMEGVLSARVHISYDIDA--GEN 139 Query: 168 GARP-----TASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 G P +A + +P + I+ + + ++D +++V+ Sbjct: 140 GRPPKPVHLSALAVYERGSPLAH-QISDIKRFLKNSFADVDYDNISVV 186 >gi|238756004|ref|ZP_04617329.1| Type III secretion system apparatus lipoprotein [Yersinia ruckeri ATCC 29473] gi|238705793|gb|EEP98185.1| Type III secretion system apparatus lipoprotein [Yersinia ruckeri ATCC 29473] Length = 252 Score = 72.7 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 74/184 (40%), Gaps = 4/184 (2%) Query: 30 LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVP 86 ++ +LF + + + NL +L+ N + L + I +NG SI+V Sbjct: 3 IIRALLFAGSTLLLTACDKQNLLTELDQRQSNEVLATLQQNGIQGTKHENGKLGFSINVA 62 Query: 87 SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146 + A L LPS + + F S + + + +E + ++I +I Sbjct: 63 KNDFIAAVDLLKQYNLPSKDAVEIIQAFPGD-SLVASPQAERTRLLSLIEQRLEQSITTI 121 Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGD 206 G+V ARVH+ P + + + +S++ A + I+ + + + + Sbjct: 122 PGVVNARVHVSYPLSTNTKVTQPQSISSLVTYAGSEDTKILMSKIKLFLKNSFSDSTYDN 181 Query: 207 VTVL 210 V+V+ Sbjct: 182 VSVV 185 >gi|16761648|ref|NP_457265.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143132|ref|NP_806474.1| pathogenicity island 1 effector protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213417664|ref|ZP_03350792.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213425726|ref|ZP_03358476.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580253|ref|ZP_03362079.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213650551|ref|ZP_03380604.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855142|ref|ZP_03383382.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289823852|ref|ZP_06543458.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25317961|pir||AC0849 pathogenicity 1 island effector protein [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503949|emb|CAD05978.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29138765|gb|AAO70334.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 252 Score = 72.4 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 67/168 (39%), Gaps = 12/168 (7%) Query: 51 LYVKLEVSDVNRISVALSEANIDF-RISDN--GSSISVPSSMVGKARIHLAAQGLPSSSS 107 L L+ N + L NI+ +I G SI+V A + LP Sbjct: 23 LLKGLDQEQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAAVYWIKTYQLPPRPR 82 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 ++F S + ++ A+E + +++Q++ G+++ARVHI + Sbjct: 83 VEIAQMFPAD-SLVSSPRAEKARLYSAIEQRLEQSLQTMEGVLSARVHISYDIDA--GEN 139 Query: 168 GARP-----TASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 G P +A + +P + I+ + + ++D +++V+ Sbjct: 140 GRPPKPVHLSALAVYERGSPLAH-QISDIKRFLKNSFADVDYDNISVV 186 >gi|284007659|emb|CBA73356.1| type III secretion system lipoprotein YscJ,HrcJ,EscJ,PscJ [Arsenophonus nasoniae] Length = 237 Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 67/166 (40%), Gaps = 7/166 (4%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGLPSS 105 + L L ++ N + L + +I S G I+V + A L LPS Sbjct: 20 EALLNSLTITQANEVLAVLQKHHITVSKSAQGKGLYKINVAKEDLPAAVQLLQEYQLPSP 79 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 +LF + + +++ + +E + +++ ++ I ARVH+ P + Sbjct: 80 ERLEISQLFPAD-ALVNSPQIEKARLISGIEQRLEQSLMALDKIADARVHLSYPIAAN-N 137 Query: 166 KIGARPTASVMI--RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209 + A ASV++ N + + I+ + A+ L+ +TV Sbjct: 138 RSQAPMKASVIVFYHDENQDIDELKLGIKAFIKNAISELEPQYITV 183 >gi|12056610|gb|AAG47968.1|AF312695_8 FliF [Pseudomonas fluorescens] Length = 97 Score = 71.2 bits (173), Expect = 4e-10, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 30/73 (41%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y LY L D ++ L Sbjct: 25 LSFLENLSEMTVLRQVGLLVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDAKQVMDTL 84 Query: 68 SEANIDFRISDNG 80 + A+I + + N Sbjct: 85 ASADIPYTVEPNS 97 >gi|293416340|ref|ZP_06658979.1| lipoprotein prgK [Escherichia coli B185] gi|291431696|gb|EFF04679.1| lipoprotein prgK [Escherichia coli B185] Length = 250 Score = 71.2 bits (173), Expect = 4e-10, Method: Composition-based stats. Identities = 37/195 (18%), Positives = 75/195 (38%), Gaps = 18/195 (9%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGLPSSSS 107 L +L+ N + L + NI DNG S++V A + LP Sbjct: 23 LLQELDQYQANEVISLLQQHNIRADKIDNGKKGFSVTVAEPDFTAAVYWVKVYELPPRPR 82 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 ++F + + ++ A+E + +++Q++ GI++ARVHI Sbjct: 83 VEIAQMFPAD-ALVSSPRAEKARLYSAIEQRLEQSLQTLPGIISARVHISYDID---AGE 138 Query: 168 GARPTASVMIRAI-----NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM 222 RP+ V + A+ + I+ + + N++ +++V+ L+ Sbjct: 139 SGRPSVPVHLSALAVYERGTPLGLQISDIKRFLKNSFANVEYDNISVV------LSERRE 192 Query: 223 ERNILGKSLSIVQAI 237 + + S S Q I Sbjct: 193 DEFRVSASRSSRQDI 207 >gi|213027569|ref|ZP_03342016.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 204 Score = 70.8 bits (172), Expect = 5e-10, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 66/167 (39%), Gaps = 10/167 (5%) Query: 51 LYVKLEVSDVNRISVALSEANIDF-RISDN--GSSISVPSSMVGKARIHLAAQGLPSSSS 107 L L+ N + L NI+ +I G SI+V A + LP Sbjct: 23 LLKGLDQEQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAAVYWIKTYQLPPRPR 82 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 ++F S + ++ A+E + +++Q++ G+++ARVHI + Sbjct: 83 VEIAQMFPAD-SLVSSPRAEKARLYSAIEQRLEQSLQTMEGVLSARVHISYDIDA--GEN 139 Query: 168 GARPT----ASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 G P +++ + + I+ + + ++D +++V+ Sbjct: 140 GRPPKPVHLSALAVYERGSPLAHQISDIKRFLKNSFADVDYDNISVV 186 >gi|213160801|ref|ZP_03346511.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 233 Score = 70.8 bits (172), Expect = 5e-10, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 66/167 (39%), Gaps = 10/167 (5%) Query: 51 LYVKLEVSDVNRISVALSEANIDF-RISDN--GSSISVPSSMVGKARIHLAAQGLPSSSS 107 L L+ N + L NI+ +I G SI+V A + LP Sbjct: 4 LLKGLDQEQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAAVYWIKTYQLPPRPR 63 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 ++F S + ++ A+E + +++Q++ G+++ARVHI + Sbjct: 64 VEIAQMFPAD-SLVSSPRAEKARLYSAIEQRLEQSLQTMEGVLSARVHISYDIDA--GEN 120 Query: 168 GARPT----ASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 G P +++ + + I+ + + ++D +++V+ Sbjct: 121 GRPPKPVHLSALAVYERGSPLAHQISDIKRFLKNSFADVDYDNISVV 167 >gi|123443740|ref|YP_001007711.1| type III secretion system apparatus lipoprotein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|8996043|gb|AAF82342.1|AF005744_21 YsaJ [Yersinia enterocolitica] gi|122090701|emb|CAL13577.1| type III secretion system apparatus lipoprotein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 247 Score = 70.4 bits (171), Expect = 7e-10, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 71/180 (39%), Gaps = 4/180 (2%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG---SSISVPSSMV 90 L ++A + ++ L +L N + L E ++ +NG +SI V S Sbjct: 7 FLVISAIWLLSGCDNQVLLTELSQRQSNEVLAVLQENGVEGTRRENGKLGNSIKVARSDF 66 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A L LPS S + F S + + + +E + +++ +I G+V Sbjct: 67 VTAVDLLRLYNLPSKESVEIIQAFPGD-SLVASPQAERSRLLSLIEQRLEQSLLTIPGVV 125 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 ARVH+ P + R + +S++ A N I+ + + +V+V+ Sbjct: 126 NARVHVSYPLNSNSRVKEPQQVSSLVTYAGNEDPKLMMSKIKLFLTNSFAEASFDNVSVV 185 >gi|212711714|ref|ZP_03319842.1| hypothetical protein PROVALCAL_02789 [Providencia alcalifaciens DSM 30120] gi|212685816|gb|EEB45344.1| hypothetical protein PROVALCAL_02789 [Providencia alcalifaciens DSM 30120] Length = 240 Score = 70.4 bits (171), Expect = 7e-10, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 62/165 (37%), Gaps = 4/165 (2%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDF---RISDNGSSISVPSSMVGKARIHLAAQGLPSS 105 L L N + L E +D + S NG SI V + A L LPS Sbjct: 14 QLLLSNLSQRQSNEVLAILQEHGVDANRKQDSKNGDSIRVAPNDFVIAVDLLRQYNLPSK 73 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 + F S + + + +E + +++ +I +V ARVH+ P G+ Sbjct: 74 DPVEIIDAFPGD-SLVASPQAERTRLLSLIEQRLEQSLLTIPNVVNARVHVSYPISGNGP 132 Query: 166 KIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 A+ +S++ + N I+ + + +V+V+ Sbjct: 133 VKQAQKVSSLVTYSGNEDPKVMMNKIKLFLNNSFAETTYDNVSVV 177 >gi|15088593|gb|AAK84104.1|AF369954_2 YsaJ [Yersinia enterocolitica] Length = 247 Score = 70.4 bits (171), Expect = 7e-10, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 71/180 (39%), Gaps = 4/180 (2%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG---SSISVPSSMV 90 L ++A + ++ L +L N + L E ++ +NG +SI V S Sbjct: 7 FLVISAIWLLSGCDNQVLLTELSQRQSNEVLAVLQENGVEGTRRENGKLGNSIKVARSDF 66 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A L LPS S + F S + + + +E + +++ +I G+V Sbjct: 67 VTAVDLLRLYNLPSQESVEHIQAFPGD-SLVASPQAERSRLLSLIEQRLEQSLLTIPGVV 125 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 ARVH+ P + R + +S++ A N I+ + + +V+V+ Sbjct: 126 NARVHVSYPLNSNSRVKEPQQVSSLVTYAGNEDPKLMMSKIKLFLTNSFAEASFDNVSVV 185 >gi|82524583|ref|YP_406178.1| MxiJ [Shigella dysenteriae Sd197] gi|81243981|gb|ABB64690.1| MxiJ [Shigella dysenteriae Sd197] Length = 241 Score = 70.1 bits (170), Expect = 9e-10, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 4/163 (2%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGLPSSSS 107 L L N I L NI R D G S+ V A + LP+ Sbjct: 24 LISNLSQRQANEIISVLERHNISARKVDGGKQGISVQVEKGTFASAVDLMRMYDLPNPER 83 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 ++F S + ++ A+E + +++ SI G+++A++H+ Sbjct: 84 VDISQMFPTD-SLVSSPRAEKARLYSAIEQRLEQSLVSIGGVISAKIHVSYDLDDKNISS 142 Query: 168 GARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 + + I I+ + ++ +++V+ Sbjct: 143 KPMHISVIAIYDSPKESELLVSNIKRFLKNTFSDVKYENISVI 185 >gi|238898342|ref|YP_002924023.1| type III needle complex inner membrane lipoprotein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466101|gb|ACQ67875.1| type III needle complex inner membrane lipoprotein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 249 Score = 70.1 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 70/185 (37%), Gaps = 11/185 (5%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSM 89 ++ F V + L L+ N +S L NI + +D G SISV Sbjct: 7 VICFCFIGLLVGCKEQNLL-KGLDQQQANEVSALLLRHNIPAQKTDQLKEGYSISVNPED 65 Query: 90 VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149 A + LPS ++F S + ++ +E + +++QS+ GI Sbjct: 66 FVAAVGLIKTYNLPSKPRVEISQMFPGD-SLISSPRQEKARLYSGIEQRLEQSLQSMRGI 124 Query: 150 VAARVHIVMPDMGSFRKIGARPTA---SVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMG 205 V ARVH+ + G + A S ++ ++ + + +LD Sbjct: 125 VTARVHVSYDLDS--GEGGRKTPAIHLSSLVNHDQGMDTSLLIGDVKRFLKNSFNDLDYE 182 Query: 206 DVTVL 210 +++V+ Sbjct: 183 NISVI 187 >gi|32307032|gb|AAP79002.1| MxiJ [Shigella flexneri] Length = 241 Score = 69.7 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 57/165 (34%), Gaps = 4/165 (2%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGLPSS 105 + L L N I L NI R D G S+ V A + LP+ Sbjct: 22 EELISNLSQRQANEIISVLERHNITARKVDGGKQGISVQVEKGTFASAVDLMRMYDLPNP 81 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 ++F S + ++ A+E + +++ SI G+++A++H+ Sbjct: 82 ERVDISQMFPTD-SLVSSPRAEKARLYSAIEQRLEQSLVSIGGVISAKIHVSYDLEEKNI 140 Query: 166 KIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 + + I I+ + ++ +++V+ Sbjct: 141 SSKPMHISVIAIYDSPKESELLVSNIKRFLKNTFSDVKYENISVI 185 >gi|326634131|pdb|2Y9J|Y Chain Y, Three-Dimensional Model Of Salmonella's Needle Complex At Subnanometer Resolution gi|326634132|pdb|2Y9J|Z Chain Z, Three-Dimensional Model Of Salmonella's Needle Complex At Subnanometer Resolution gi|326634133|pdb|2Y9J|AA Chain a, Three-Dimensional Model Of Salmonella's Needle Complex At Subnanometer Resolution gi|326634134|pdb|2Y9J|BB Chain b, Three-Dimensional Model Of Salmonella's Needle Complex At Subnanometer Resolution gi|326634135|pdb|2Y9J|CC Chain c, Three-Dimensional Model Of Salmonella's Needle Complex At Subnanometer Resolution gi|326634136|pdb|2Y9J|DD Chain d, Three-Dimensional Model Of Salmonella's Needle Complex At Subnanometer Resolution gi|326634137|pdb|2Y9J|EE Chain e, Three-Dimensional Model Of Salmonella's Needle Complex At Subnanometer Resolution gi|326634138|pdb|2Y9J|FF Chain f, Three-Dimensional Model Of Salmonella's Needle Complex At Subnanometer Resolution gi|326634139|pdb|2Y9J|GG Chain g, Three-Dimensional Model Of Salmonella's Needle Complex At Subnanometer Resolution gi|326634140|pdb|2Y9J|HH Chain h, Three-Dimensional Model Of Salmonella's Needle Complex At Subnanometer Resolution gi|326634141|pdb|2Y9J|II Chain i, Three-Dimensional Model Of Salmonella's Needle Complex At Subnanometer Resolution gi|326634142|pdb|2Y9J|JJ Chain j, Three-Dimensional Model Of Salmonella's Needle Complex At Subnanometer Resolution gi|326634143|pdb|2Y9J|KK Chain k, Three-Dimensional Model Of Salmonella's Needle Complex At Subnanometer Resolution gi|326634144|pdb|2Y9J|LL Chain l, Three-Dimensional Model Of Salmonella's Needle Complex At Subnanometer Resolution gi|326634145|pdb|2Y9J|MM Chain m, Three-Dimensional Model Of Salmonella's Needle Complex At Subnanometer Resolution gi|326634146|pdb|2Y9J|NN Chain n, Three-Dimensional Model Of Salmonella's Needle Complex At Subnanometer Resolution gi|326634147|pdb|2Y9J|OO Chain o, Three-Dimensional Model Of Salmonella's Needle Complex At Subnanometer Resolution gi|326634148|pdb|2Y9J|PP Chain p, Three-Dimensional Model Of Salmonella's Needle Complex At Subnanometer Resolution gi|326634149|pdb|2Y9J|QQ Chain q, Three-Dimensional Model Of Salmonella's Needle Complex At Subnanometer Resolution gi|326634150|pdb|2Y9J|RR Chain r, Three-Dimensional Model Of Salmonella's Needle Complex At Subnanometer Resolution gi|326634151|pdb|2Y9J|SS Chain s, Three-Dimensional Model Of Salmonella's Needle Complex At Subnanometer Resolution gi|326634152|pdb|2Y9J|TT Chain t, Three-Dimensional Model Of Salmonella's Needle Complex At Subnanometer Resolution gi|326634153|pdb|2Y9J|UU Chain u, Three-Dimensional Model Of Salmonella's Needle Complex At Subnanometer Resolution gi|326634154|pdb|2Y9J|VV Chain v, Three-Dimensional Model Of Salmonella's Needle Complex At Subnanometer Resolution Length = 170 Score = 69.7 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 66/167 (39%), Gaps = 10/167 (5%) Query: 51 LYVKLEVSDVNRISVALSEANIDF-RISDN--GSSISVPSSMVGKARIHLAAQGLPSSSS 107 L L+ N + L NI+ +I G SI+V A + LP Sbjct: 3 LLKGLDQEQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAAVYWIKTYQLPPRPR 62 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 ++F S + ++ A+E + +++Q++ G+++ARVHI + Sbjct: 63 VEIAQMFPAD-SLVSSPRAEKARLYSAIEQRLEQSLQTMEGVLSARVHISYDIDA--GEN 119 Query: 168 GARPT----ASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 G P +++ + + I+ + + ++D +++V+ Sbjct: 120 GRPPKPVHLSALAVYERGSPLAHQISDIKRFLKNSFADVDYDNISVV 166 >gi|74314938|ref|YP_313356.1| MxiJ [Shigella sonnei Ss046] gi|2497731|sp|Q55288|MXIJ_SHISO RecName: Full=Lipoprotein mxiJ; Flags: Precursor gi|829066|dbj|BAA09148.1| ORF8 [Shigella sonnei] gi|73858415|gb|AAZ91121.1| MxiJ [Shigella sonnei Ss046] gi|323166429|gb|EFZ52194.1| hypothetical protein SS53G_3273 [Shigella sonnei 53G] Length = 241 Score = 69.3 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 57/165 (34%), Gaps = 4/165 (2%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGLPSS 105 + L L N I L NI R D G S+ V A + LP+ Sbjct: 22 EELISNLSQRQANEIISVLERHNITARKVDGGKQGISVQVEKGTFASAVDLMRMYDLPNP 81 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 ++F S + ++ A+E + +++ SI G+++A++H+ Sbjct: 82 ERVDISQMFPTD-SLVSSPRAEKARLYSAIEQRLEQSLVSIGGVISAKIHVSYDLEEKNI 140 Query: 166 KIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 + + I I+ + ++ +++V+ Sbjct: 141 SSKPMHISVIAIYDSPKESELLVSNIKRFLKNTFSDVKYENISVI 185 >gi|13449086|ref|NP_085302.1| Type III secretion protein [Shigella flexneri 5a] gi|31983564|ref|NP_858272.1| MxiJ, lipoprotein, component of the Mxi-Spa secretion machinery [Shigella flexneri 2a str. 301] gi|547955|sp|Q06081|MXIJ_SHIFL RecName: Full=Lipoprotein mxiJ; Flags: Precursor gi|13310634|gb|AAK18458.1|AF348706_147 Type III secretion protein [Shigella flexneri 5a] gi|152767|gb|AAA26532.1| lipoprotein [Shigella flexneri] gi|12329083|emb|CAC05814.1| MxiJ, lipoprotein, component of the Mxi-Spa secretion machinery [Shigella flexneri] gi|18462556|gb|AAL72328.1| MxiJ, lipoprotein, component of the Mxi-Spa secretion machinery [Shigella flexneri 2a str. 301] gi|281603894|gb|ADA76877.1| MxiJ, lipoprotein, component of the Mxi-Spa secretion machinery [Shigella flexneri 2002017] gi|333011811|gb|EGK31212.1| hypothetical protein SFK227_5445 [Shigella flexneri K-227] gi|333011866|gb|EGK31259.1| hypothetical protein SFK227_5394 [Shigella flexneri K-227] gi|333020368|gb|EGK39632.1| hypothetical protein SFK304_1151 [Shigella flexneri K-304] Length = 241 Score = 69.3 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 57/165 (34%), Gaps = 4/165 (2%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGLPSS 105 + L L N I L NI R D G S+ V A + LP+ Sbjct: 22 EELISNLSQRQANEIISVLERHNITARKVDGGKQGISVQVEKGTFASAVDLMRMYDLPNP 81 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 ++F S + ++ A+E + +++ SI G+++A++H+ Sbjct: 82 ERVDISQMFPTD-SLVSSPRAEKARLYSAIEQRLEQSLVSIGGVISAKIHVSYDLEEKNI 140 Query: 166 KIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 + + I I+ + ++ +++V+ Sbjct: 141 SSKPMHISVIAIYDSPKESELLVSNIKRFLKNTFSDVKYENISVI 185 >gi|187734478|ref|YP_001883201.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Shigella boydii CDC 3083-94] gi|194435204|ref|ZP_03067432.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Shigella dysenteriae 1012] gi|187426974|gb|ACD06249.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Shigella boydii CDC 3083-94] gi|194416548|gb|EDX32689.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Shigella dysenteriae 1012] Length = 241 Score = 68.9 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 57/165 (34%), Gaps = 4/165 (2%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGLPSS 105 + L L N I L NI R D G S+ V A + LP+ Sbjct: 22 EELISNLSQRQANEIISVLERHNITARKVDGGKQGISVQVEKGTFASAVDLMRMYDLPNP 81 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 ++F S + ++ A+E + +++ SI G+++A++H+ Sbjct: 82 ERVDISQMFPTD-SLVSSPRAEKARLYSAIEQRLEQSLVSIGGVISAKIHVSYDLEEKNI 140 Query: 166 KIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 + + I I+ + ++ +++V+ Sbjct: 141 SSKPMHISVIAIYDSPKESELLVSNIKRFLKNTFSDVKYENISVI 185 >gi|157781880|gb|ABV72266.1| FliF [Azospirillum brasilense] Length = 77 Score = 68.9 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 3/80 (3%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++ LLQ ++ LG R+ + V L+ I F+ +++P + LY +L+ ++ I Sbjct: 1 MNNLLQTLRN---LGPARLAAIGGVGLLLIGFFVYLMTRLSTPEMELLYAELQPTEAAAI 57 Query: 64 SVALSEANIDFRISDNGSSI 83 + L EA + F + G+ I Sbjct: 58 AKKLEEAKVPFTVDKTGTKI 77 >gi|238796123|ref|ZP_04639634.1| Type III secretion system apparatus lipoprotein [Yersinia mollaretii ATCC 43969] gi|238720068|gb|EEQ11873.1| Type III secretion system apparatus lipoprotein [Yersinia mollaretii ATCC 43969] Length = 251 Score = 68.5 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 69/180 (38%), Gaps = 4/180 (2%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG---SSISVPSSMV 90 L +A ++ L +L N + L E ++ DNG SSI V S Sbjct: 7 FLIIAVLGLLSGCDNQTLLTELSQRQGNEVLAVLQENGVEGTRRDNGKLGSSIKVARSDF 66 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A L LPS + F S + + + +E + +++ +I G+V Sbjct: 67 VTAVDLLRLYNLPSKDPVEIIQAFPGD-SLVASPQAERSRLLSLIEQRLQQSLLTIPGVV 125 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 ARVH+ P + R + +S++ A N + I+ + + +V+V+ Sbjct: 126 NARVHVSYPLNSNNRVKQLQQVSSLVTYAGNEDPKQMMNKIKLFLTNSFTETSYDNVSVV 185 >gi|301027465|ref|ZP_07190802.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 69-1] gi|300394973|gb|EFJ78511.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 69-1] Length = 244 Score = 68.5 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 63/173 (36%), Gaps = 14/173 (8%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGLP 103 L L+ N + L NI+ D G + I V + A L LP Sbjct: 17 KQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIYVEPTDFASAVDWLKIYNLP 76 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 + ++ + ++ A+E + ++++ + GIV++RVH+ Sbjct: 77 -GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIVSSRVHVSYDVDT- 134 Query: 164 FRKIGARPTA-----SVM-IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 + TA SV+ + + + I+ + + ++ +++V+ Sbjct: 135 ---GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVV 184 >gi|218706353|ref|YP_002413872.1| putative type III secretion system lipoprotein EprK [Escherichia coli UMN026] gi|293406346|ref|ZP_06650272.1| lipoprotein prgK [Escherichia coli FVEC1412] gi|300898076|ref|ZP_07116444.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 198-1] gi|218433450|emb|CAR14352.1| Putative Type III secretion system lipoprotein EprK [Escherichia coli UMN026] gi|291426352|gb|EFE99384.1| lipoprotein prgK [Escherichia coli FVEC1412] gi|300358214|gb|EFJ74084.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 198-1] Length = 244 Score = 68.1 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 63/173 (36%), Gaps = 14/173 (8%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGLP 103 L L+ N + L NI+ D G + I V + A L LP Sbjct: 17 KQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIYVEPTDFASAVDWLKIYNLP 76 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 + ++ + ++ A+E + ++++ + GIV++RVH+ Sbjct: 77 -GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIVSSRVHVSYDVDT- 134 Query: 164 FRKIGARPTA-----SVM-IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 + TA SV+ + + + I+ + + ++ +++V+ Sbjct: 135 ---GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVV 184 >gi|293449177|ref|ZP_06663598.1| type III secretion protein SctJ [Escherichia coli B088] gi|291322267|gb|EFE61696.1| type III secretion protein SctJ [Escherichia coli B088] Length = 244 Score = 68.1 bits (165), Expect = 4e-09, Method: Composition-based stats. Identities = 25/169 (14%), Positives = 60/169 (35%), Gaps = 6/169 (3%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGLP 103 L L+ N + L NI+ D G + I V + A L LP Sbjct: 17 KQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIFVEPTDFASAVDWLKIYNLP 76 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 + ++ + ++ A+E + ++++ + GI+++RVH+ Sbjct: 77 -GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIISSRVHVSYDVDNG 135 Query: 164 FRKIGARPTASVMIRAINPSVYKSAEA--IRHLVAAAVPNLDMGDVTVL 210 A P ++ + + I+ + + ++ +++V+ Sbjct: 136 DSGKTALPIHISVLTVYEKDINPEIKINDIKRFIVNSSASVQYENISVV 184 >gi|62085059|gb|AAX62924.1| putative type III secretion apparatus lipoprotein [Escherichia coli] gi|323966646|gb|EGB62078.1| YscJ/HrcJ family protein type III secretion lipoprotein [Escherichia coli M863] gi|323978527|gb|EGB73609.1| YscJ/HrcJ family protein type III secretion lipoprotein [Escherichia coli TW10509] gi|327251607|gb|EGE63293.1| hypothetical protein ECSTEC7V_3457 [Escherichia coli STEC_7v] Length = 244 Score = 68.1 bits (165), Expect = 4e-09, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 63/173 (36%), Gaps = 14/173 (8%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGLP 103 L L+ N + L NI+ D G + I V + A L LP Sbjct: 17 KQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIYVEPTDFASAVDWLKIYNLP 76 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 + ++ + ++ A+E + ++++ + GIV++RVH+ Sbjct: 77 -GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIVSSRVHVSYDVDT- 134 Query: 164 FRKIGARPTA-----SVM-IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 + TA SV+ + + + I+ + + ++ +++V+ Sbjct: 135 ---GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVV 184 >gi|254575119|gb|ACT68020.1| type III secretion apparatus [Pantoea stewartii subsp. stewartii DC283] Length = 255 Score = 68.1 bits (165), Expect = 4e-09, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 74/186 (39%), Gaps = 12/186 (6%) Query: 32 PIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN---GSSISVPSS 88 + + + A L+ L N++ L + N+ G +++V S Sbjct: 8 ALAVVLFALMLSACNDEKLLF-NLTQEQANQVLAVLQQHNVSASKEGTLKAGYTVAVNKS 66 Query: 89 MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISG 148 A + LP S+ + F + + + ++ + E + ++++ I+ Sbjct: 67 ESTAALSIINQYQLPWSADVQIAQAFPE-GALVTSPNAEQARVISLQEQRLEQSLRMIAQ 125 Query: 149 IVAARVHIVMPDMGSFRKIGAR-PTASV-MIRAINPSVYKS--AEAIRHLVAAAVPNLDM 204 +V ARVH+ P +F +R PT V +I + + I+HL+ + +L Sbjct: 126 VVNARVHVSYP---AFNNDSSRTPTGHVGVIITYKGEIDDNLFIPQIKHLIKNSFYDLRY 182 Query: 205 GDVTVL 210 +++V+ Sbjct: 183 ENISVV 188 >gi|167566213|ref|ZP_02359129.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia oklahomensis EO147] gi|167573323|ref|ZP_02366197.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia oklahomensis C6786] Length = 298 Score = 68.1 bits (165), Expect = 4e-09, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 63/169 (37%), Gaps = 6/169 (3%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLP 103 + L L N + L N+ R + G ++SV A L LP Sbjct: 20 NQQELLKNLTEQQANDVVAVLQAHNLAVRKEDLGKTGYAVSVEQVDFPTAVDLLRQYNLP 79 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMG 162 S + + F S + ++ + A+E + + + ++ +V+ARV I P Sbjct: 80 SQARVQIGQAFPAD-SLVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQISYPLKPS 138 Query: 163 SFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 K AR + ++ N ++ V + N+D D++V+ Sbjct: 139 DSGKPDARMHVAALLTYRNDVNQDILVSEVKRFVKNSFTNIDYDDISVI 187 >gi|331664417|ref|ZP_08365323.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli TA143] gi|284922795|emb|CBG35883.1| type III secretion system protein [Escherichia coli 042] gi|331058348|gb|EGI30329.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli TA143] Length = 244 Score = 68.1 bits (165), Expect = 4e-09, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 63/173 (36%), Gaps = 14/173 (8%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGLP 103 L L+ N + L NI+ D G + I V + A L LP Sbjct: 17 KQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIYVEPTDFASAVDWLKIYNLP 76 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 + ++ + ++ A+E + ++++ + GIV++RVH+ Sbjct: 77 -GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIVSSRVHVSYDVDT- 134 Query: 164 FRKIGARPTA-----SVM-IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 + TA SV+ + + + I+ + + ++ +++V+ Sbjct: 135 ---GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVV 184 >gi|331654341|ref|ZP_08355341.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli M718] gi|331047723|gb|EGI19800.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli M718] Length = 244 Score = 67.7 bits (164), Expect = 5e-09, Method: Composition-based stats. Identities = 29/196 (14%), Positives = 68/196 (34%), Gaps = 6/196 (3%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGLP 103 L L+ N + L NI+ D G + I V + A L LP Sbjct: 17 KQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIFVEPTDFASAVDWLKIYNLP 76 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 + ++ + ++ A+E + ++++ + GIV++RVH+ Sbjct: 77 -GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIVSSRVHVSYDVDTG 135 Query: 164 FRKIGARPTASVMIRAINPSVYKSAEA--IRHLVAAAVPNLDMGDVTVLDSTGKLLTANE 221 A P ++ + + I+ + + ++ +++V+ S + + Sbjct: 136 DSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVVLSKRRDIIEQA 195 Query: 222 MERNILGKSLSIVQAI 237 I + +A+ Sbjct: 196 PTYEISEPVFAYEKAM 211 >gi|15803380|ref|NP_289413.1| putative lipoprotein of type III secretion apparatus [Escherichia coli O157:H7 EDL933] gi|15832970|ref|NP_311743.1| EprK [Escherichia coli O157:H7 str. Sakai] gi|168747678|ref|ZP_02772700.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. EC4113] gi|168753782|ref|ZP_02778789.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. EC4401] gi|168759972|ref|ZP_02784979.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. EC4501] gi|168766837|ref|ZP_02791844.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. EC4486] gi|168775721|ref|ZP_02800728.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. EC4196] gi|168778858|ref|ZP_02803865.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. EC4076] gi|168785690|ref|ZP_02810697.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. EC869] gi|168799977|ref|ZP_02824984.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. EC508] gi|195936464|ref|ZP_03081846.1| EprK [Escherichia coli O157:H7 str. EC4024] gi|208808993|ref|ZP_03251330.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. EC4206] gi|208814265|ref|ZP_03255594.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. EC4045] gi|208819767|ref|ZP_03260087.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. EC4042] gi|209398387|ref|YP_002272324.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. EC4115] gi|217327850|ref|ZP_03443933.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. TW14588] gi|254794800|ref|YP_003079637.1| putative lipoprotein of type III secretion apparatus [Escherichia coli O157:H7 str. TW14359] gi|256024641|ref|ZP_05438506.1| putative lipoprotein of type III secretion apparatus [Escherichia sp. 4_1_40B] gi|261226159|ref|ZP_05940440.1| putative lipoprotein of type III secretion apparatus [Escherichia coli O157:H7 str. FRIK2000] gi|261256586|ref|ZP_05949119.1| putative lipoprotein of type III secretion apparatus [Escherichia coli O157:H7 str. FRIK966] gi|300950603|ref|ZP_07164505.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 116-1] gi|300958184|ref|ZP_07170338.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 175-1] gi|301026133|ref|ZP_07189607.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 196-1] gi|301643809|ref|ZP_07243846.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 146-1] gi|307139541|ref|ZP_07498897.1| putative lipoprotein of type III secretion apparatus [Escherichia coli H736] gi|331643541|ref|ZP_08344672.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli H736] gi|12517355|gb|AAG57972.1|AE005514_9 putative lipoprotein of type III secretion apparatus [Escherichia coli O157:H7 str. EDL933] gi|13363188|dbj|BAB37139.1| type III secretion system lipoprotein precursor EprK [Escherichia coli O157:H7 str. Sakai] gi|62085081|gb|AAX62944.1| putative type III secretion apparatus lipoprotein [Escherichia coli] gi|187768733|gb|EDU32577.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. EC4196] gi|188017908|gb|EDU56030.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. EC4113] gi|189003460|gb|EDU72446.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. EC4076] gi|189358523|gb|EDU76942.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. EC4401] gi|189363691|gb|EDU82110.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. EC4486] gi|189369428|gb|EDU87844.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. EC4501] gi|189374196|gb|EDU92612.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. EC869] gi|189377636|gb|EDU96052.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. EC508] gi|208728794|gb|EDZ78395.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. EC4206] gi|208735542|gb|EDZ84229.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. EC4045] gi|208739890|gb|EDZ87572.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. EC4042] gi|209159787|gb|ACI37220.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. EC4115] gi|217320217|gb|EEC28642.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. TW14588] gi|254594200|gb|ACT73561.1| putative lipoprotein of type III secretion apparatus [Escherichia coli O157:H7 str. TW14359] gi|299879828|gb|EFI88039.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 196-1] gi|300315136|gb|EFJ64920.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 175-1] gi|300450083|gb|EFK13703.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 116-1] gi|301077842|gb|EFK92648.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 146-1] gi|320189189|gb|EFW63848.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC1212] gi|326339070|gb|EGD62885.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. 1044] gi|326343049|gb|EGD66817.1| type III secretion system BasJ [Escherichia coli O157:H7 str. 1125] gi|331037012|gb|EGI09236.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli H736] Length = 244 Score = 67.7 bits (164), Expect = 5e-09, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 60/169 (35%), Gaps = 6/169 (3%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGLP 103 L L+ N + L NI+ D G + I V + A L LP Sbjct: 17 KQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIYVEPTDFASAVDWLKIYNLP 76 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 + ++ + ++ A+E + ++++ + GIV++RVH+ Sbjct: 77 -GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIVSSRVHVSYDVDTG 135 Query: 164 FRKIGARPTASVMIRAINPSVYKSAEA--IRHLVAAAVPNLDMGDVTVL 210 A P ++ + + I+ + + ++ +++V+ Sbjct: 136 DSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVV 184 >gi|323935787|gb|EGB32090.1| YscJ/HrcJ family protein type III secretion lipoprotein [Escherichia coli E1520] Length = 244 Score = 67.7 bits (164), Expect = 5e-09, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 60/169 (35%), Gaps = 6/169 (3%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGLP 103 L L+ N + L NI+ D G + I V + A L LP Sbjct: 17 KQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIYVEPTDFASAVDWLKIYNLP 76 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 + ++ + ++ A+E + ++++ + GIV++RVH+ Sbjct: 77 -GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIVSSRVHVSYDVDTG 135 Query: 164 FRKIGARPTASVMIRAINPSVYKSAEA--IRHLVAAAVPNLDMGDVTVL 210 A P ++ + + I+ + + ++ +++V+ Sbjct: 136 DSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVV 184 >gi|268592388|ref|ZP_06126609.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Providencia rettgeri DSM 1131] gi|291312174|gb|EFE52627.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Providencia rettgeri DSM 1131] Length = 249 Score = 67.7 bits (164), Expect = 5e-09, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 73/190 (38%), Gaps = 10/190 (5%) Query: 24 ILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF---RISDNG 80 IL IL+ + F+AA L +L N + L E ++ + + NG Sbjct: 3 ILKKFILIGFISFLAAC------DNQLLLSQLSQRQSNEVLAILQEHGVEATRKQDNKNG 56 Query: 81 SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140 SI V S A L LPS + F S + + + +E + Sbjct: 57 DSIRVQPSDFVIAVDLLRQYNLPSKEPIEIIQAFPGD-SLVASPQAERTRLLSLIEQRLE 115 Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVP 200 +++ +I I+ ARVH+ P G+ + +S++ + + I+ + + Sbjct: 116 QSLLTIPDIINARVHVSYPLNGNNPTKQIQNVSSLVTYSGSEDPQMMMHKIKLFLTNSFA 175 Query: 201 NLDMGDVTVL 210 + +V+V+ Sbjct: 176 EANYDNVSVV 185 >gi|186976174|gb|ACD01056.1| EprK [Escherichia coli O157:H7 str. EC10] Length = 244 Score = 67.4 bits (163), Expect = 6e-09, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 63/173 (36%), Gaps = 14/173 (8%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGLP 103 L L+ N + L NI+ D G SI V + A L LP Sbjct: 17 KQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKIGFSIYVEPTDFASAVDWLKIYNLP 76 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 + ++ + ++ A+E + ++++ + GIV++RVH+ Sbjct: 77 -GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIVSSRVHVSYDVDT- 134 Query: 164 FRKIGARPTA-----SVM-IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 + TA SV+ + + + I+ + + ++ +++V+ Sbjct: 135 ---GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVV 184 >gi|293412203|ref|ZP_06654926.1| conserved hypothetical protein [Escherichia coli B354] gi|291468974|gb|EFF11465.1| conserved hypothetical protein [Escherichia coli B354] Length = 244 Score = 67.4 bits (163), Expect = 6e-09, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 63/173 (36%), Gaps = 14/173 (8%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGLP 103 L L+ N + L NI+ D G SI V + A L LP Sbjct: 17 KQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKIGFSIYVEPTDFASAVDWLKIYNLP 76 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 + ++ + ++ A+E + ++++ + GIV++RVH+ Sbjct: 77 -GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIVSSRVHVSYDVDT- 134 Query: 164 FRKIGARPTA-----SVM-IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 + TA SV+ + + + I+ + + ++ +++V+ Sbjct: 135 ---GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVV 184 >gi|293416099|ref|ZP_06658739.1| type III secretion protein SctJ [Escherichia coli B185] gi|291432288|gb|EFF05270.1| type III secretion protein SctJ [Escherichia coli B185] Length = 244 Score = 67.4 bits (163), Expect = 7e-09, Method: Composition-based stats. Identities = 29/196 (14%), Positives = 68/196 (34%), Gaps = 6/196 (3%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGLP 103 L L+ N + L NI+ D G + I V + A L LP Sbjct: 17 KQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIFVEPTDFASAVDWLKIYNLP 76 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 + ++ + ++ A+E + ++++ + GIV++RVH+ Sbjct: 77 -GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIVSSRVHVSYDVDTG 135 Query: 164 FRKIGARPTASVMIRAINPSVYKSAEA--IRHLVAAAVPNLDMGDVTVLDSTGKLLTANE 221 A P ++ + + I+ + + ++ +++V+ S + + Sbjct: 136 DSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVVLSKRRDIIEQA 195 Query: 222 MERNILGKSLSIVQAI 237 I + +A+ Sbjct: 196 PTNEISEPVFAYDKAM 211 >gi|309703212|emb|CBJ02547.1| type III secretion system protein [Escherichia coli ETEC H10407] Length = 244 Score = 67.0 bits (162), Expect = 8e-09, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 63/173 (36%), Gaps = 14/173 (8%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGLP 103 L L+ N + L +I+ D G + I V + A L LP Sbjct: 17 KQQELLNHLDQQQANDVLAVLQRHHINAEKKDQGKTGFSIYVEPTDFASAVDWLKIYNLP 76 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 + ++ + ++ A+E + ++++ + GIV++RVH+ Sbjct: 77 -GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIVSSRVHVSYDVDT- 134 Query: 164 FRKIGARPTA-----SVM-IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 + TA SV+ + + + I+ + + ++ +++V+ Sbjct: 135 ---GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVV 184 >gi|157157566|ref|YP_001464192.1| type III secretion apparatus lipoprotein EprK [Escherichia coli E24377A] gi|191166008|ref|ZP_03027844.1| type III secretion apparatus lipoprotein EprK [Escherichia coli B7A] gi|209920309|ref|YP_002294393.1| putative lipoprotein of type III secretion apparatus [Escherichia coli SE11] gi|218555405|ref|YP_002388318.1| putative Type III secretion system lipoprotein EprK [Escherichia coli IAI1] gi|218696453|ref|YP_002404120.1| Putative Type III secretion system lipoprotein EprK [Escherichia coli 55989] gi|256019349|ref|ZP_05433214.1| Putative Type III secretion system lipoprotein EprK [Shigella sp. D9] gi|260856970|ref|YP_003230861.1| type III secretion system lipoprotein precursor EprK [Escherichia coli O26:H11 str. 11368] gi|260869536|ref|YP_003235938.1| type III secretion system lipoprotein precursor EprK [Escherichia coli O111:H- str. 11128] gi|300815719|ref|ZP_07095943.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 107-1] gi|300820651|ref|ZP_07100802.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 119-7] gi|300906610|ref|ZP_07124301.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 84-1] gi|301302998|ref|ZP_07209125.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 124-1] gi|309793911|ref|ZP_07688336.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 145-7] gi|331678837|ref|ZP_08379511.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli H591] gi|332280462|ref|ZP_08392875.1| type III secretion apparatus lipoprotein EprK [Shigella sp. D9] gi|71388150|gb|AAZ31284.1| EprK [Escherichia coli] gi|157079596|gb|ABV19304.1| type III secretion apparatus lipoprotein EprK [Escherichia coli E24377A] gi|190903956|gb|EDV63669.1| type III secretion apparatus lipoprotein EprK [Escherichia coli B7A] gi|209913568|dbj|BAG78642.1| putative lipoprotein of type III secretion apparatus [Escherichia coli SE11] gi|218353185|emb|CAU99067.1| Putative Type III secretion system lipoprotein EprK [Escherichia coli 55989] gi|218362173|emb|CAQ99786.1| Putative Type III secretion system lipoprotein EprK [Escherichia coli IAI1] gi|257755619|dbj|BAI27121.1| type III secretion system lipoprotein precursor EprK [Escherichia coli O26:H11 str. 11368] gi|257765892|dbj|BAI37387.1| type III secretion system lipoprotein precursor EprK [Escherichia coli O111:H- str. 11128] gi|300401649|gb|EFJ85187.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 84-1] gi|300526915|gb|EFK47984.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 119-7] gi|300531648|gb|EFK52710.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 107-1] gi|300841662|gb|EFK69422.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 124-1] gi|308122318|gb|EFO59580.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 145-7] gi|315256723|gb|EFU36691.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 85-1] gi|320202498|gb|EFW77068.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli EC4100B] gi|323154782|gb|EFZ40979.1| hypothetical protein ECEPECA14_3340 [Escherichia coli EPECa14] gi|323180296|gb|EFZ65848.1| hypothetical protein ECOK1180_0977 [Escherichia coli 1180] gi|323183404|gb|EFZ68801.1| hypothetical protein ECOK1357_3182 [Escherichia coli 1357] gi|324021198|gb|EGB90417.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 117-3] gi|324119892|gb|EGC13771.1| YscJ/HrcJ family protein type III secretion lipoprotein [Escherichia coli E1167] gi|331073667|gb|EGI44988.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli H591] gi|332102814|gb|EGJ06160.1| type III secretion apparatus lipoprotein EprK [Shigella sp. D9] Length = 244 Score = 67.0 bits (162), Expect = 9e-09, Method: Composition-based stats. Identities = 25/169 (14%), Positives = 60/169 (35%), Gaps = 6/169 (3%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGLP 103 L L+ N + L NI+ D G + I V + A L LP Sbjct: 17 KQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIFVEPTDFASAVDWLKIYNLP 76 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 + ++ + ++ A+E + ++++ + GI+++RVH+ Sbjct: 77 -GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIISSRVHVSYDVDNG 135 Query: 164 FRKIGARPTASVMIRAINPSVYKSAEA--IRHLVAAAVPNLDMGDVTVL 210 A P ++ + + I+ + + ++ +++V+ Sbjct: 136 DSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSSASVQYENISVV 184 >gi|330903685|gb|EGH34257.1| flagellar MS-ring protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 122 Score = 66.2 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 37/118 (31%), Gaps = 3/118 (2%) Query: 279 DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK--EEQS 336 P A + ++ N + D P K + Sbjct: 4 QPPGPATAPQTAGAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPADKRVQSTK 63 Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNK-GRLTEVLGRSADQGKIDSYLAEINKIVS 393 N+E++ T +L RLS+AVVV+ + G + + LA ++V Sbjct: 64 NFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVSRAPWSAADLARFTRLVR 121 >gi|183600567|ref|ZP_02962060.1| hypothetical protein PROSTU_04153 [Providencia stuartii ATCC 25827] gi|188019844|gb|EDU57884.1| hypothetical protein PROSTU_04153 [Providencia stuartii ATCC 25827] Length = 253 Score = 65.8 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 65/181 (35%), Gaps = 5/181 (2%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF---RISDNGSSISVPSSM 89 ++L + L L N + L E ++ + + G SI V Sbjct: 7 LILITFVGLLAGCDN-QLLLSHLSQRQSNEVLAILQEHGVEASRKQDNKQGDSIKVSPRD 65 Query: 90 VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149 A L LPS + F S + + + +E + +++ +I + Sbjct: 66 FVIAVDLLRQYNLPSKDPVEIIQAFPGD-SLVASPQAERTRLLSLIEQRLEQSLLTIPDV 124 Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209 V ARVH+ P G+ + +S++ + N I+ + ++ + +V+V Sbjct: 125 VNARVHVSYPLNGNTPTKQTQKVSSLVTYSGNEDPKLMMNKIKLFLTSSFAETNYDNVSV 184 Query: 210 L 210 + Sbjct: 185 V 185 >gi|238759401|ref|ZP_04620566.1| Type III secretion system apparatus lipoprotein [Yersinia aldovae ATCC 35236] gi|238702428|gb|EEP94980.1| Type III secretion system apparatus lipoprotein [Yersinia aldovae ATCC 35236] Length = 247 Score = 65.8 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 65/165 (39%), Gaps = 4/165 (2%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDNG---SSISVPSSMVGKARIHLAAQGLPSS 105 L +L N + L E ++ +NG +SI V S A L LPS Sbjct: 22 QVLLTELSQRQSNEVLAVLQENGVEGTRRENGKLGNSIKVARSDFVTAVDLLRLYNLPSK 81 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 S + F S + + + +E + +++ +I G+V ARVH+ P G+ R Sbjct: 82 ESVEIIQAFPGD-SLVASPQAERSRLLSLIEQRLEQSLLTIPGVVNARVHVSYPLSGNNR 140 Query: 166 KIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 + +S++ A N I+ + + +V+V+ Sbjct: 141 VKQPQQVSSLVTYAGNEDPKLMMSKIKLFLTNSFAEASFDNVSVV 185 >gi|312972926|ref|ZP_07787099.1| conserved hypothetical protein [Escherichia coli 1827-70] gi|62085073|gb|AAX62937.1| putative type III secretion apparatus lipoprotein [Escherichia coli] gi|310332868|gb|EFQ00082.1| conserved hypothetical protein [Escherichia coli 1827-70] gi|323941625|gb|EGB37805.1| YscJ/HrcJ family protein type III secretion lipoprotein [Escherichia coli E482] gi|332344751|gb|AEE58085.1| conserved hypothetical protein [Escherichia coli UMNK88] Length = 244 Score = 65.8 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 63/173 (36%), Gaps = 14/173 (8%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGLP 103 L L+ N + L NI+ D G + I V + A L LP Sbjct: 17 KQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIYVEPTDFASAVDWLKIYNLP 76 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 + ++ + ++ A+E + ++++ + GI+++RVH+ Sbjct: 77 -GKPDIQISQMFPADALVSSPRAEKARLYSAIEQWLEQSLKIMDGIISSRVHVSYDVDN- 134 Query: 164 FRKIGARPTA-----SVM-IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 + TA SV+ + + + I+ + + ++ +++V+ Sbjct: 135 ---GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVV 184 >gi|167577420|ref|ZP_02370294.1| type III secretion system BasJ [Burkholderia thailandensis TXDOH] Length = 234 Score = 65.0 bits (157), Expect = 3e-08, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 6/169 (3%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLP 103 + L L N + L ++ R + G ++SV + A L LP Sbjct: 20 NQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNLP 79 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMG 162 S + + F S + ++ + A+E + + + ++ +V+ARV + P Sbjct: 80 SQARVQIAQAFPAD-SLVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKPS 138 Query: 163 SFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 K AR + ++ N ++ V + N+D D++V+ Sbjct: 139 DSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187 >gi|323173915|gb|EFZ59544.1| hypothetical protein ECLT68_2234 [Escherichia coli LT-68] Length = 244 Score = 65.0 bits (157), Expect = 3e-08, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 62/173 (35%), Gaps = 14/173 (8%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGLP 103 L L+ N + L NI+ D G + I V + A L LP Sbjct: 17 KQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIFVEPTDFASAVDWLKIYNLP 76 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 + ++ + ++ A+E + ++++ + GI+++RVH+ Sbjct: 77 -GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIISSRVHVSYDVDN- 134 Query: 164 FRKIGARPTA-----SVM-IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 + TA SV+ + + + I+ + + ++ ++ V+ Sbjct: 135 ---GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENIYVV 184 >gi|323211177|gb|EFZ96024.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] Length = 230 Score = 65.0 bits (157), Expect = 3e-08, Method: Composition-based stats. Identities = 22/140 (15%), Positives = 53/140 (37%), Gaps = 3/140 (2%) Query: 75 RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134 + ++G ++ V S A L G P + ++F ++ ++ Sbjct: 30 KQEEDGVTLRVEQSQFINAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFL 88 Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRH 193 E I + + G++ A+V I +P + + +V I+ ++ I+ Sbjct: 89 KEQRIEGMLSQMEGVINAKVTIALPTYDE-GSNASPSSVAVFIKYSPQVNMEAFRVKIKD 147 Query: 194 LVAAAVPNLDMGDVTVLDST 213 L+ ++P L +++L Sbjct: 148 LIEMSIPGLQYSKISILMQP 167 >gi|83716456|ref|YP_439020.1| type III secretion system BasJ [Burkholderia thailandensis E264] gi|257142128|ref|ZP_05590390.1| type III secretion system BasJ [Burkholderia thailandensis E264] gi|83650281|gb|ABC34345.1| type III secretion system BasJ [Burkholderia thailandensis E264] Length = 315 Score = 65.0 bits (157), Expect = 3e-08, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 6/169 (3%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLP 103 + L L N + L ++ R + G ++SV + A L LP Sbjct: 20 NQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNLP 79 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMG 162 S + + F S + ++ + A+E + + + ++ +V+ARV + P Sbjct: 80 SQARVQIAQAFPAD-SLVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKPS 138 Query: 163 SFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 K AR + ++ N ++ V + N+D D++V+ Sbjct: 139 DSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187 >gi|53716312|ref|YP_106138.1| type III secretion system BasJ [Burkholderia mallei ATCC 23344] gi|124381716|ref|YP_001025850.1| type III secretion system BasJ [Burkholderia mallei NCTC 10229] gi|126447771|ref|YP_001077934.1| type III secretion system BasJ [Burkholderia mallei NCTC 10247] gi|52422282|gb|AAU45852.1| type III secretion system BasJ [Burkholderia mallei ATCC 23344] gi|126240625|gb|ABO03737.1| type III secretion system BasJ [Burkholderia mallei NCTC 10247] gi|261826463|gb|ABN00251.2| type III secretion system BasJ [Burkholderia mallei NCTC 10229] Length = 316 Score = 65.0 bits (157), Expect = 3e-08, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 6/169 (3%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLP 103 + L L N + L ++ R + G ++SV + A L LP Sbjct: 20 NQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNLP 79 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMG 162 S + + F S + ++ + A+E + + + ++ +V+ARV + P Sbjct: 80 SQARVQIAQAFPAD-SLVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKPS 138 Query: 163 SFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 K AR + ++ N ++ V + N+D D++V+ Sbjct: 139 DSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187 >gi|217425204|ref|ZP_03456699.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 576] gi|217391809|gb|EEC31836.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 576] Length = 315 Score = 65.0 bits (157), Expect = 3e-08, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 6/169 (3%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLP 103 + L L N + L ++ R + G ++SV + A L LP Sbjct: 20 NQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNLP 79 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMG 162 S + + F S + ++ + A+E + + + ++ +V+ARV + P Sbjct: 80 SQARVQIAQAFPAD-SLVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKPS 138 Query: 163 SFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 K AR + ++ N ++ V + N+D D++V+ Sbjct: 139 DSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187 >gi|134281957|ref|ZP_01768663.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 305] gi|134246486|gb|EBA46574.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 305] Length = 316 Score = 65.0 bits (157), Expect = 3e-08, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 6/169 (3%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLP 103 + L L N + L ++ R + G ++SV + A L LP Sbjct: 20 NQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNLP 79 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMG 162 S + + F S + ++ + A+E + + + ++ +V+ARV + P Sbjct: 80 SQARVQIAQAFPAD-SLVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKPS 138 Query: 163 SFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 K AR + ++ N ++ V + N+D D++V+ Sbjct: 139 DSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187 >gi|76819532|ref|YP_335750.1| Type III secretion system protein [Burkholderia pseudomallei 1710b] gi|254264263|ref|ZP_04955128.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 1710a] gi|76584005|gb|ABA53479.1| Type III secretion system protein [Burkholderia pseudomallei 1710b] gi|254215265|gb|EET04650.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 1710a] Length = 315 Score = 65.0 bits (157), Expect = 3e-08, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 6/169 (3%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLP 103 + L L N + L ++ R + G ++SV + A L LP Sbjct: 20 NQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNLP 79 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMG 162 S + + F S + ++ + A+E + + + ++ +V+ARV + P Sbjct: 80 SQARVQIAQAFPAD-SLVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKPS 138 Query: 163 SFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 K AR + ++ N ++ V + N+D D++V+ Sbjct: 139 DSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187 >gi|53722571|ref|YP_111556.1| Type III secretion system protein [Burkholderia pseudomallei K96243] gi|126456880|ref|YP_001076127.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Burkholderia pseudomallei 1106a] gi|254186868|ref|ZP_04893384.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei Pasteur 52237] gi|254193641|ref|ZP_04900073.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei S13] gi|254301444|ref|ZP_04968888.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 406e] gi|52212985|emb|CAH39023.1| Type III secretion system protein [Burkholderia pseudomallei K96243] gi|126230648|gb|ABN94061.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 1106a] gi|157810759|gb|EDO87929.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 406e] gi|157934552|gb|EDO90222.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei Pasteur 52237] gi|169650392|gb|EDS83085.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei S13] Length = 315 Score = 64.7 bits (156), Expect = 4e-08, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 6/169 (3%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLP 103 + L L N + L ++ R + G ++SV + A L LP Sbjct: 20 NQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNLP 79 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMG 162 S + + F S + ++ + A+E + + + ++ +V+ARV + P Sbjct: 80 SQARVQIAQAFPAD-SLVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKPS 138 Query: 163 SFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 K AR + ++ N ++ V + N+D D++V+ Sbjct: 139 DSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187 >gi|167615572|ref|ZP_02384207.1| type III secretion system BasJ [Burkholderia thailandensis Bt4] Length = 235 Score = 64.7 bits (156), Expect = 4e-08, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 6/169 (3%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLP 103 + L L N + L ++ R + G ++SV + A L LP Sbjct: 20 NQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNLP 79 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMG 162 S + + F S + ++ + A+E + + + ++ +V+ARV + P Sbjct: 80 SQARVQIAQAFPAD-SLVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKPS 138 Query: 163 SFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 K AR + ++ N ++ V + N+D D++V+ Sbjct: 139 DSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187 >gi|167908415|ref|ZP_02495620.1| type III secretion system BasJ [Burkholderia pseudomallei NCTC 13177] Length = 233 Score = 64.7 bits (156), Expect = 4e-08, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 6/169 (3%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLP 103 + L L N + L ++ R + G ++SV + A L LP Sbjct: 20 NQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNLP 79 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMG 162 S + + F S + ++ + A+E + + + ++ +V+ARV + P Sbjct: 80 SQARVQIAQAFPAD-SLVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKPS 138 Query: 163 SFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 K AR + ++ N ++ V + N+D D++V+ Sbjct: 139 DSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187 >gi|167820398|ref|ZP_02452078.1| type III secretion system BasJ [Burkholderia pseudomallei 91] Length = 226 Score = 64.7 bits (156), Expect = 4e-08, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 6/169 (3%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLP 103 + L L N + L ++ R + G ++SV + A L LP Sbjct: 20 NQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNLP 79 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMG 162 S + + F S + ++ + A+E + + + ++ +V+ARV + P Sbjct: 80 SQARVQIAQAFPAD-SLVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKPS 138 Query: 163 SFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 K AR + ++ N ++ V + N+D D++V+ Sbjct: 139 DSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187 >gi|167743223|ref|ZP_02415997.1| type III secretion system BasJ [Burkholderia pseudomallei 14] Length = 225 Score = 64.7 bits (156), Expect = 4e-08, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 6/169 (3%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLP 103 + L L N + L ++ R + G ++SV + A L LP Sbjct: 20 NQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNLP 79 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMG 162 S + + F S + ++ + A+E + + + ++ +V+ARV + P Sbjct: 80 SQARVQIAQAFPAD-SLVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKPS 138 Query: 163 SFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 K AR + ++ N ++ V + N+D D++V+ Sbjct: 139 DSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187 >gi|34497875|ref|NP_902090.1| cell invasion protein [Chromobacterium violaceum ATCC 12472] gi|34103731|gb|AAQ60092.1| cell invasion protein [Chromobacterium violaceum ATCC 12472] Length = 242 Score = 64.7 bits (156), Expect = 4e-08, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 69/169 (40%), Gaps = 6/169 (3%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGLP 103 +L L+ N + L NI+ +D G + I+V + A L A LP Sbjct: 19 QQKDLLKGLDQQQANEVIAVLQRHNIEADKADRGKAGFSIAVAPADFAAAVDWLRAYDLP 78 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 S ++F S + ++ A+E + +++Q++ GI++ARVH+ Sbjct: 79 SRPRMEVAQMFPAD-SLVSSPRAEKARLYSAIEQRLEQSLQTMDGILSARVHVSYDLDSG 137 Query: 164 FRKIGARP--TASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 ++P +++ + + I+ + + +D +++V+ Sbjct: 138 EAGRASQPMHISALAVYDRDVDAAAMINNIKRFLKNSFAEVDYDNISVV 186 >gi|300936210|ref|ZP_07151146.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 21-1] gi|300458667|gb|EFK22160.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 21-1] Length = 244 Score = 64.7 bits (156), Expect = 4e-08, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 63/173 (36%), Gaps = 14/173 (8%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGLP 103 L L+ N + L NI+ D G SI V + A L LP Sbjct: 17 KQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKIGFSIYVEPTDFASAVDWLKIYNLP 76 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 + ++ + ++ A++ + ++++ + GIV++RVH+ Sbjct: 77 -GKPDIQISQMFPADALVSSPRAEKARLYSAIKQRLEQSLKIMDGIVSSRVHVSYDVDT- 134 Query: 164 FRKIGARPTA-----SVM-IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 + TA SV+ + + + I+ + + ++ +++V+ Sbjct: 135 ---GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVV 184 >gi|167898828|ref|ZP_02486229.1| type III secretion system BasJ [Burkholderia pseudomallei 7894] Length = 232 Score = 64.7 bits (156), Expect = 4e-08, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 6/169 (3%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLP 103 + L L N + L ++ R + G ++SV + A L LP Sbjct: 20 NQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNLP 79 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMG 162 S + + F S + ++ + A+E + + + ++ +V+ARV + P Sbjct: 80 SQARVQIAQAFPAD-SLVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKPS 138 Query: 163 SFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 K AR + ++ N ++ V + N+D D++V+ Sbjct: 139 DSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187 >gi|167828770|ref|ZP_02460241.1| type III secretion system BasJ [Burkholderia pseudomallei 9] Length = 230 Score = 64.7 bits (156), Expect = 4e-08, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 6/169 (3%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLP 103 + L L N + L ++ R + G ++SV + A L LP Sbjct: 20 NQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNLP 79 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMG 162 S + + F S + ++ + A+E + + + ++ +V+ARV + P Sbjct: 80 SQARVQIAQAFPAD-SLVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKPS 138 Query: 163 SFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 K AR + ++ N ++ V + N+D D++V+ Sbjct: 139 DSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187 >gi|237507749|ref|ZP_04520464.1| type III secretion system protein [Burkholderia pseudomallei MSHR346] gi|234999954|gb|EEP49378.1| type III secretion system protein [Burkholderia pseudomallei MSHR346] Length = 315 Score = 64.7 bits (156), Expect = 4e-08, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 6/169 (3%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLP 103 + L L N + L ++ R + G ++SV + A L LP Sbjct: 20 NQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNLP 79 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMG 162 S + + F S + ++ + A+E + + + ++ +V+ARV + P Sbjct: 80 SQARVQIAQAFPAD-SLVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKPS 138 Query: 163 SFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 K AR + ++ N ++ V + N+D D++V+ Sbjct: 139 DSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187 >gi|226196079|ref|ZP_03791665.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei Pakistan 9] gi|225931972|gb|EEH27973.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei Pakistan 9] Length = 315 Score = 64.7 bits (156), Expect = 4e-08, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 6/169 (3%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLP 103 + L L N + L ++ R + G ++SV + A L LP Sbjct: 20 NQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNLP 79 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMG 162 S + + F S + ++ + A+E + + + ++ +V+ARV + P Sbjct: 80 SQARVQIAQAFPAD-SLVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKPS 138 Query: 163 SFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 K AR + ++ N ++ V + N+D D++V+ Sbjct: 139 DSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187 >gi|126442499|ref|YP_001063176.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Burkholderia pseudomallei 668] gi|126221990|gb|ABN85495.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 668] Length = 315 Score = 64.7 bits (156), Expect = 4e-08, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 6/169 (3%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLP 103 + L L N + L ++ R + G ++SV + A L LP Sbjct: 20 NQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNLP 79 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMG 162 S + + F S + ++ + A+E + + + ++ +V+ARV + P Sbjct: 80 SQARVQIAQAFPAD-SLVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKPS 138 Query: 163 SFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 K AR + ++ N ++ V + N+D D++V+ Sbjct: 139 DSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187 >gi|67639417|ref|ZP_00438277.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia mallei GB8 horse 4] gi|238519955|gb|EEP83420.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia mallei GB8 horse 4] Length = 264 Score = 64.7 bits (156), Expect = 4e-08, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 6/169 (3%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLP 103 + L L N + L ++ R + G ++SV + A L LP Sbjct: 20 NQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNLP 79 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMG 162 S + + F S + ++ + A+E + + + ++ +V+ARV + P Sbjct: 80 SQARVQIAQAFPAD-SLVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKPS 138 Query: 163 SFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 K AR + ++ N ++ V + N+D D++V+ Sbjct: 139 DSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187 >gi|167850225|ref|ZP_02475733.1| type III secretion system BasJ [Burkholderia pseudomallei B7210] Length = 233 Score = 64.7 bits (156), Expect = 4e-08, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 6/169 (3%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLP 103 + L L N + L ++ R + G ++SV + A L LP Sbjct: 20 NQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNLP 79 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMG 162 S + + F S + ++ + A+E + + + ++ +V+ARV + P Sbjct: 80 SQARVQIAQAFPAD-SLVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKPS 138 Query: 163 SFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 K AR + ++ N ++ V + N+D D++V+ Sbjct: 139 DSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187 >gi|167923356|ref|ZP_02510447.1| type III secretion system BasJ [Burkholderia pseudomallei BCC215] Length = 238 Score = 64.7 bits (156), Expect = 5e-08, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 6/169 (3%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLP 103 + L L N + L ++ R + G ++SV + A L LP Sbjct: 20 NQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNLP 79 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMG 162 S + + F S + ++ + A+E + + + ++ +V+ARV + P Sbjct: 80 SQARVQIAQAFPAD-SLVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKPS 138 Query: 163 SFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 K AR + ++ N ++ V + N+D D++V+ Sbjct: 139 DSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187 >gi|227357604|ref|ZP_03841957.1| type III secretion system protein [Proteus mirabilis ATCC 29906] gi|227162314|gb|EEI47318.1| type III secretion system protein [Proteus mirabilis ATCC 29906] Length = 250 Score = 64.3 bits (155), Expect = 5e-08, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 67/165 (40%), Gaps = 7/165 (4%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGLPSSSS 107 L L I L + I + G ISV +G A L LP+ S Sbjct: 26 LLTNLSQRQATEIQAVLQKHQITSTRTALGKGLFEISVKKENIGIAIQILEEYQLPTISR 85 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 +LF + + ++ + A+E + +++ +I ++ ARVH+ P + +I Sbjct: 86 IEITQLFPSD-ALVSSPQAEKARLISAIEQRLEQSLLTIDHLIDARVHVSYPLSSN-DRI 143 Query: 168 GARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVL 210 P AS ++ + + + +R + A ++D ++TVL Sbjct: 144 TPTPHASALVFYEDGMIDSDQLSDDVRAFIHNAFNDMDESNITVL 188 >gi|167724247|ref|ZP_02407483.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei DM98] gi|167915509|ref|ZP_02502600.1| type III secretion system BasJ [Burkholderia pseudomallei 112] Length = 222 Score = 64.3 bits (155), Expect = 5e-08, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 6/169 (3%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLP 103 + L L N + L ++ R + G ++SV + A L LP Sbjct: 20 NQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNLP 79 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMG 162 S + + F S + ++ + A+E + + + ++ +V+ARV + P Sbjct: 80 SQARVQIAQAFPAD-SLVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKPS 138 Query: 163 SFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 K AR + ++ N ++ V + N+D D++V+ Sbjct: 139 DSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187 >gi|259908651|ref|YP_002649007.1| Type III secretion system [Erwinia pyrifoliae Ep1/96] gi|224964273|emb|CAX55780.1| Type III secretion system [Erwinia pyrifoliae Ep1/96] gi|283478623|emb|CAY74539.1| Lipoprotein PrgK precursor [Erwinia pyrifoliae DSM 12163] Length = 253 Score = 64.3 bits (155), Expect = 6e-08, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 68/164 (41%), Gaps = 5/164 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRIS---DNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 L L N++ L + NI + S +G +ISV A + LP S+ Sbjct: 26 LLENLTQEQTNQVLAILQQHNISAQKSGAVKDGFAISVSQQENTAALSIINQYQLPWSAE 85 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 + F + ++ + ++ + LE + ++++ I+ +V ARVHI P + S + Sbjct: 86 IQIAQAFPE-SALVASPNAEQTRVLSLLEQRLGQSLRIINQVVNARVHISYPGVRSDKGN 144 Query: 168 GARPTASVMIRAINP-SVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 V+I I+ L+ ++ ++ +++V+ Sbjct: 145 KTLSHVGVLISYKGEIDDNLFISQIKSLIKNSLSDVRYENISVV 188 >gi|197286530|ref|YP_002152402.1| type III secretion system protein [Proteus mirabilis HI4320] gi|194684017|emb|CAR45314.1| type III secretion system protein [Proteus mirabilis HI4320] Length = 250 Score = 64.3 bits (155), Expect = 6e-08, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 67/165 (40%), Gaps = 7/165 (4%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGLPSSSS 107 L L I L + I + G ISV +G A L LP+ S Sbjct: 26 LLTNLSQRQATEIQAVLQKHQITSTRTALGKGLFEISVKKENIGIAIQILEEYQLPTISR 85 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 +LF + + ++ + A+E + +++ +I ++ ARVH+ P + +I Sbjct: 86 IEITQLFPSD-ALVSSPQAEKARLISAIEQRLEQSLLTIDHLIDARVHVSYPLSSN-DRI 143 Query: 168 GARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVL 210 P AS ++ + + + +R + A ++D ++TVL Sbjct: 144 TPTPHASALVFYEDGMIDSDQLSDDVRAFIHNAFNDMDESNITVL 188 >gi|261344604|ref|ZP_05972248.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Providencia rustigianii DSM 4541] gi|282567518|gb|EFB73053.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Providencia rustigianii DSM 4541] Length = 249 Score = 63.9 bits (154), Expect = 6e-08, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 59/165 (35%), Gaps = 4/165 (2%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRI---SDNGSSISVPSSMVGKARIHLAAQGLPSS 105 L L N + L E I+ + S NG SI V + L LPS Sbjct: 22 QLLLSDLSQRQSNEVLAVLQEHGIEAQRKQDSKNGDSIRVSPDDFVISVDLLRQYNLPSK 81 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 F S + + + +E + +++ +I +V ARVH+ P G+ Sbjct: 82 GPVEIIHAFPGD-SLVASPQAERTRVLSLIEQRLEQSLLTIPHVVNARVHVSYPVAGNGP 140 Query: 166 KIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 + +S++ + N I+ + + +V+V+ Sbjct: 141 IKPVQKVSSLVTYSGNEDPKVMMNKIKLFLNNSFAETTYDNVSVV 185 >gi|323189407|gb|EFZ74688.1| hypothetical protein ECRN5871_2295 [Escherichia coli RN587/1] Length = 134 Score = 63.9 bits (154), Expect = 6e-08, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 52/130 (40%), Gaps = 7/130 (5%) Query: 82 SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 ++SV +A L G P + E+ + + + E +I R Sbjct: 2 TLSVEKEDFVRAITILNNNGFPKKKF-ADIEVIFPPSQLVASPSQENAKINYLKEQDIER 60 Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP-SVYKSAEAIRHLVAAAVP 200 + I G++ V + + + +A+V++ + ++ S I++LV +V Sbjct: 61 LLSKIPGVIDCSVSLNVNNN-----ESQPSSAAVLVISSPEVNLAPSVIQIKNLVKNSVD 115 Query: 201 NLDMGDVTVL 210 L + +++V+ Sbjct: 116 ALKLENISVV 125 >gi|323226606|gb|EGA10809.1| putative pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] Length = 134 Score = 63.9 bits (154), Expect = 6e-08, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 4/129 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90 I+ FF+ + +LY L + N++ L + +ID ++G ++ V S Sbjct: 6 IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A L G P + ++F ++ ++ E I + + G++ Sbjct: 65 INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVI 123 Query: 151 AARVHIVMP 159 A+V I +P Sbjct: 124 NAKVTIALP 132 >gi|213618539|ref|ZP_03372365.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 146 Score = 63.9 bits (154), Expect = 6e-08, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 4/110 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDF-RISDN--GSSISVPSSMVGKARIHLAAQGLPSSSS 107 L L+ N + L NI+ +I G SI+V A + LP Sbjct: 23 LLKGLDQEQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAAVYWIKTYQLPPRPR 82 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 ++F S + ++ A+E + +++Q++ G+++ARVHI Sbjct: 83 VEIAQMFPAD-SLVSSPRAEKARLYSAIEQRLEQSLQTMEGVLSARVHIS 131 >gi|167840188|ref|ZP_02466872.1| type III secretion system BasJ [Burkholderia thailandensis MSMB43] Length = 216 Score = 63.5 bits (153), Expect = 8e-08, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 64/169 (37%), Gaps = 6/169 (3%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLP 103 + L L N + L ++ R + G ++SV + A L LP Sbjct: 20 NQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNLP 79 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMG 162 S + + F + + ++ + A+E + + + ++ +V+ARV + P Sbjct: 80 SQARVQIAQAFPAD-ALVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKPS 138 Query: 163 SFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 K AR + ++ N ++ V + N+D D++V+ Sbjct: 139 DSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187 >gi|213861544|ref|ZP_03386014.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 115 Score = 63.5 bits (153), Expect = 8e-08, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 37/115 (32%), Gaps = 24/115 (20%) Query: 266 LNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------- 313 ++ ++ E Y P+ ++ S+ SE P N P Sbjct: 1 MDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIA 60 Query: 314 -----HVSDRKVPLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLER 356 + + P + N++ + E SNYE++ T + +ER Sbjct: 61 TPPTNQQNAQNTPQTSTSTNSNNAGPRNTQRNETSNYEVDRTIRHTKMNVGDIER 115 >gi|188534048|ref|YP_001907845.1| Type III secretion system [Erwinia tasmaniensis Et1/99] gi|188029090|emb|CAO96959.1| Type III secretion system [Erwinia tasmaniensis Et1/99] Length = 259 Score = 63.5 bits (153), Expect = 9e-08, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 69/182 (37%), Gaps = 6/182 (3%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN---GSSISVPSSMV 90 + F + + + L L N++ L + NI S N G +I V Sbjct: 9 FFIILTAFLLAACDNERLLENLTQDQANQVLAILQQHNISANKSGNLKAGYTIQVDEIEN 68 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A ++ LP + + F + + +++ + LE + +++++I+ +V Sbjct: 69 TAALSIISQYQLPWPADIQIGQAFP-DGALVASPNAEQVRVLSLLEQRLGQSLRTIAQVV 127 Query: 151 AARVHIVMPD-MGSFRKIGARPTASVMIRAINP-SVYKSAEAIRHLVAAAVPNLDMGDVT 208 ARVHI P V+I + ++ L+ ++ ++ +++ Sbjct: 128 NARVHISYPPLKNGMADKTLTNHVGVLISYKGDINQSLFIPQVKSLIKNSLDDIKYENIS 187 Query: 209 VL 210 V+ Sbjct: 188 VV 189 >gi|310767451|gb|ADP12401.1| Type III secretion system [Erwinia sp. Ejp617] Length = 253 Score = 63.5 bits (153), Expect = 9e-08, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 68/164 (41%), Gaps = 5/164 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRIS---DNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 L L N++ L + NI + S +G +ISV A + LP S+ Sbjct: 26 LLENLTQEQTNQVLAILQQHNISAQKSGAVKDGFAISVSQQENTAALSIINQYQLPWSAE 85 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 + F + ++ + ++ + LE + ++++ I+ +V ARVHI P + S + Sbjct: 86 IQIAQAFPE-SALVASPNAEQTRVLSLLEQRLGQSLRIINQVVNARVHISYPGVRSDKGN 144 Query: 168 GARPTASVMIRAINP-SVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 V+I I+ L+ ++ ++ +++V+ Sbjct: 145 KTLSHVGVLISYKGEIDDNLFISQIKSLIKNSLSDVRYENISVV 188 >gi|330719506|gb|EGG98119.1| Flagellar M-ring protein FliF [gamma proteobacterium IMCC2047] Length = 157 Score = 63.1 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 24/159 (15%), Positives = 61/159 (38%), Gaps = 2/159 (1%) Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455 G + RGD +T+ + F+ ++ + ++V + V L L+ +LV + Sbjct: 1 MGFDEARGDIVTVINAPFIPVKVEVAEEIEVPLWEQAW-FMKLVKQGLAALLVLILVFVV 59 Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL 515 ++ L N +K + + P+ +A+ S + + L Sbjct: 60 IRPIMKSLANNGQQQKALAEATARAQEAAKQAEAMANATPSQAMAMQQSAPGGGAAAMML 119 Query: 516 QSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 S + +I+ + +R A+++++W +++ Sbjct: 120 PGPG-PGAGGMSLSNVQSVIDSDPQRAAQVVKQWVKTDE 157 >gi|85060054|ref|YP_455756.1| type III secretion apparatus [Sodalis glossinidius str. 'morsitans'] gi|84780574|dbj|BAE75351.1| type III secretion apparatus [Sodalis glossinidius str. 'morsitans'] Length = 253 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 62/167 (37%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGLPSS 105 + L L+ N + L NI +D +G S+++ + A L +PS Sbjct: 23 EPLLKGLDQVQANEVITTLQRNNIAAEKADHGKSGYSVAINKVDLPAAVDLLRTYQVPSP 82 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 ++F S + ++ A+E + +++Q + G+V ARVH+ Sbjct: 83 PRMEIAQMFPGD-SLVSSPRAEKARLYSAIEQRLEQSLQVLEGVVNARVHVSYDIDAGEN 141 Query: 166 KIGARPTASVMIRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTVL 210 RP + + P + ++ + + + ++V+ Sbjct: 142 GRAPRPVHLSALVSYEPDSDPALLIGDVKRFLKNSFAEVAYEHISVV 188 >gi|289803181|ref|ZP_06533810.1| putative pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 210 Score = 62.3 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 22/138 (15%), Positives = 52/138 (37%), Gaps = 3/138 (2%) Query: 77 SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136 ++G ++ V S A L G P + ++F ++ ++ E Sbjct: 12 EEDGVTLRVEQSQFINAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKE 70 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLV 195 I + + G++ A+V I +P + + +V I+ ++ I+ L+ Sbjct: 71 QRIEGMLSQMEGVINAKVTIALPTYDE-GSNASPSSVAVFIKYSPQVNMEAFRVKIKDLI 129 Query: 196 AAAVPNLDMGDVTVLDST 213 ++P L +++L Sbjct: 130 EMSIPGLQYSKISILMQP 147 >gi|45504782|gb|AAS66872.1| PrgK [Sodalis glossinidius] Length = 242 Score = 62.3 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 4/112 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGLPSS 105 + L L+ N + L NI +D +G S+++ + A L +PS Sbjct: 12 EPLLKGLDQVQANEVITTLQRNNIAAEKADHGKSGYSVAINKVDLPAAVDLLRTYQVPSP 71 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 ++F S + ++ A+E + +++Q + G+V ARVH+ Sbjct: 72 PRMEIAQMFPGD-SLVSSPRAEKARLYSAIEQRLEQSLQVLEGVVNARVHVS 122 >gi|213426025|ref|ZP_03358775.1| putative pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 205 Score = 62.0 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 22/138 (15%), Positives = 52/138 (37%), Gaps = 3/138 (2%) Query: 77 SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136 ++G ++ V S A L G P + ++F ++ ++ E Sbjct: 7 EEDGVTLRVEQSQFINAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKE 65 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLV 195 I + + G++ A+V I +P + + +V I+ ++ I+ L+ Sbjct: 66 QRIEGMLSQMEGVINAKVTIALPTYDE-GSNASPSSVAVFIKYSPQVNMEAFRVKIKDLI 124 Query: 196 AAAVPNLDMGDVTVLDST 213 ++P L +++L Sbjct: 125 EMSIPGLQYSKISILMQP 142 >gi|289809530|ref|ZP_06540159.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 176 Score = 61.6 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 63/158 (39%), Gaps = 10/158 (6%) Query: 60 VNRISVALSEANIDF-RISDN--GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 N + L NI+ +I G SI+V A + LP ++F Sbjct: 1 ANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAAVYWIKTYQLPPRPRVEIAQMFPA 60 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPT---- 172 S + ++ A+E + +++Q++ G+++ARVHI + G P Sbjct: 61 D-SLVSSPRAEKARLYSAIEQRLEQSLQTMEGVLSARVHISYDIDA--GENGRPPKPVHL 117 Query: 173 ASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 +++ + + I+ + + ++D +++V+ Sbjct: 118 SALAVYERGSPLAHQISDIKRFLKNSFADVDYDNISVV 155 >gi|292487258|ref|YP_003530130.1| lipoprotein PrgK [Erwinia amylovora CFBP1430] gi|292900370|ref|YP_003539739.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|291200218|emb|CBJ47346.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|291552677|emb|CBA19722.1| Lipoprotein PrgK precursor [Erwinia amylovora CFBP1430] Length = 255 Score = 61.6 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 72/188 (38%), Gaps = 15/188 (7%) Query: 32 PIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN---GSSISVPSS 88 I++ + A + L L S N + L + NI + N G I+V S Sbjct: 8 SIVILLTAALTSGCND-EKLLDNLTQSQANHVVAILQQHNISAHKNGNLKAGYVITVGQS 66 Query: 89 MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISG 148 A + LP S+ E F S + ++ + E + ++++ I+ Sbjct: 67 ENTAALSIINQYQLPWSADVQIGEAFPS-GSLVASPNAEQARVLSLQEQRLEQSLRIIAQ 125 Query: 149 IVAARVHIVMPDMGSFRKIGARPTASV----MIRAINPSVYKS--AEAIRHLVAAAVPNL 202 +V ARVH+ P SV ++ + + ++ I+ L+ ++ ++ Sbjct: 126 VVNARVHLSYPS----FNNDISAKKSVGHVGVLISYKGEIDETMFIPQIKSLIKNSLDDV 181 Query: 203 DMGDVTVL 210 +++V+ Sbjct: 182 LYENISVV 189 >gi|292488055|ref|YP_003530932.1| lipoprotein PrgK [Erwinia amylovora CFBP1430] gi|292899266|ref|YP_003538635.1| type III secretion system lipoprotein [Erwinia amylovora ATCC 49946] gi|291199114|emb|CBJ46227.1| type III secretion system lipoprotein [Erwinia amylovora ATCC 49946] gi|291553479|emb|CBA20524.1| Lipoprotein PrgK precursor [Erwinia amylovora CFBP1430] Length = 259 Score = 61.6 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 76/189 (40%), Gaps = 12/189 (6%) Query: 30 LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS---DNGSSISVP 86 LV I + + +++ + L L N++ L + NI + S G +I++ Sbjct: 5 LVHIFFVIISAGLLSACNNQKLLENLTQEQANQVLAILLQHNISAQKSGAAKEGYAINIS 64 Query: 87 SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146 A + LP S+ + F + ++ + ++ + LE + ++++ I Sbjct: 65 QQENTVALSIINQYQLPWSADIEIGQAFPE-SALVASPNAEQTRVLSLLEQRLGQSLRVI 123 Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTA----SVMIRAINP-SVYKSAEAIRHLVAAAVPN 201 + +V ARVHI P FR TA V+I I+ + ++ + Sbjct: 124 NQVVNARVHISYPG---FRSDKGNKTAVNHVGVLISYKGDIDDNLFISQIKSFIKNSLND 180 Query: 202 LDMGDVTVL 210 + +++V+ Sbjct: 181 VRYENISVV 189 >gi|167947313|ref|ZP_02534387.1| flagellar MS-ring protein [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 96 Score = 61.2 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 16/98 (16%) Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMG--SFRKIGARPTASVMIRAINPSVYK 186 + RALEGE+ RTI +++ + A + SF P+ASV I+ + Sbjct: 1 MRYQRALEGELTRTIMTLANVETAXGSPGDAENSRCSFASAN-NPSASVTIKFYPGRTLE 59 Query: 187 SAE--------AIRHLVAAAVPNLDMGDVTVLDSTGKL 216 + +R L P L+ VTV+D G+L Sbjct: 60 KGQVECDRASGRLRQL-----PELETSRVTVVDQKGRL 92 >gi|170698158|ref|ZP_02889237.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia ambifaria IOP40-10] gi|170136923|gb|EDT05172.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia ambifaria IOP40-10] Length = 280 Score = 60.4 bits (145), Expect = 7e-07, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 61/169 (36%), Gaps = 6/169 (3%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGLP 103 H L L S N + L +I + S+ G S + V + + L LP Sbjct: 20 HQQALLHGLSESQANEVVALLQAHDITVQKSNQGKSGYMVDVEQTDFPASVDLLEKYNLP 79 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMG 162 S + F S + ++ + A+E + + + ++ +V+ARV + P Sbjct: 80 SPPRVEIDQAFPSD-SLVSSPQAEQARLLSAVEQRLEQNLSAMHDVVSARVQVSYPLQQT 138 Query: 163 SFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 K S +I ++ V + ++D D++V+ Sbjct: 139 DLIKSEPHMHVSALITYRGNVDPAMLVSEVKRFVKNSFASIDYDDISVI 187 >gi|213620660|ref|ZP_03373443.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 63 Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 25/58 (43%) Query: 318 RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS 375 + ++ E SNYE++ T + +ERLS+AVVVN L + Sbjct: 1 TSTNSNNAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKPLP 58 >gi|312171366|emb|CBX79625.1| Lipoprotein PrgK precursor [Erwinia amylovora ATCC BAA-2158] Length = 255 Score = 59.3 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 72/188 (38%), Gaps = 15/188 (7%) Query: 32 PIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN---GSSISVPSS 88 I++ + A + L L S N + L + NI + N G I+V S Sbjct: 8 SIVILLTAALTSGCND-EKLLDNLTQSQANHVVAILQQHNISAHKNGNLKAGYVITVGQS 66 Query: 89 MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISG 148 A + LP S+ E F S + ++ + E + ++++ I+ Sbjct: 67 ENTAALSIINQYQLPWSADVQIGEAFPS-GSLVASPNAEQARVLSLQEQRLEQSLRIIAQ 125 Query: 149 IVAARVHIVMPDMGSFRKIGARPTASV----MIRAINPSVYKS--AEAIRHLVAAAVPNL 202 +V ARVH+ P +V ++ + + ++ I+ L+ ++ ++ Sbjct: 126 VVNARVHLSYPS----FNNDISAKKTVGHVGVLISYKGEIDETMFIPQIKSLIKNSLDDV 181 Query: 203 DMGDVTVL 210 +++V+ Sbjct: 182 LYENISVV 189 >gi|312172181|emb|CBX80438.1| Lipoprotein PrgK precursor [Erwinia amylovora ATCC BAA-2158] Length = 230 Score = 59.3 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 30/190 (15%), Positives = 77/190 (40%), Gaps = 14/190 (7%) Query: 30 LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS---DNGSSISVP 86 LV I + + +++ + L L N++ L + NI + S G +I++ Sbjct: 5 LVHIFFVIISAGLLSACNNQKLLENLTQEQANQVLAILLQHNISAQKSGAAKEGYAINIS 64 Query: 87 SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146 A + LP S+ + F + ++ + ++ + LE + ++++ I Sbjct: 65 QQENTVALSIINQYQLPWSADIEIGQAFPE-SALVASPNAEQTRVLSLLEQRLGQSLRVI 123 Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTASV----MIRAINPSVYKS--AEAIRHLVAAAVP 200 + +V ARVHI P + +V ++ + + + I+ + ++ Sbjct: 124 NQVVNARVHISYPG----LRSDKGNKTAVNHVGVLISYKGDIDDNLFISQIKSFIKNSLN 179 Query: 201 NLDMGDVTVL 210 ++ +++V+ Sbjct: 180 DVRYENISVV 189 >gi|270488959|ref|ZP_06206033.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Yersinia pestis KIM D27] gi|270337463|gb|EFA48240.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Yersinia pestis KIM D27] Length = 157 Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 2/118 (1%) Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 N + ++ V E ++ + + G++ A V + MP K TASV I Sbjct: 7 NQLVTSPTQEQAKMVFLKEQQLENMLSHMDGVIHADVTVAMPM-SVDGKNPLPHTASVFI 65 Query: 178 RAINPSVYKSAEA-IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIV 234 + +S ++ I+ LV AVP +D ++V+ + G ++ Sbjct: 66 KYSPEVNLQSYQSQIKGLVRDAVPGIDYAKISVVMQPANYRFSASEAEQQQGPQTTVQ 123 >gi|13161235|gb|AAK13520.1|AF343975_1 FliF [Treponema denticola ATCC 33520] Length = 182 Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 25/192 (13%), Positives = 64/192 (33%), Gaps = 23/192 (11%) Query: 363 VNKGRL-TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 VN + + + + + KI+ A G ++ R D++++ ++ F Sbjct: 13 VNGKYIIKNGVIEREYKPLSAEEIKQAEKIIKDAIGFDASRKDSVSVVNVKVDRTSQFEL 72 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 + + L R +++ + + +L+ F+ + +++ E + Sbjct: 73 EDKE--YFKALQRQTIFLLS--LAGIALILLFFILYRII--------SREIERRKRLREE 120 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 + + M D D+ R + + N+ +M + E Sbjct: 121 ELLRQAQLERERMLYDQQMADADVSMTVEERRRQELQENAI----------NMAREHPED 170 Query: 542 FAKILRKWARSE 553 A ++R W E Sbjct: 171 VALLIRTWLMEE 182 >gi|167949089|ref|ZP_02536163.1| hypothetical protein Epers_22296 [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 86 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 1/64 (1%) Query: 21 RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS-VALSEANIDFRISDN 79 R L + I + L +A + P Y L+ L +R S L ++ ID+ + Sbjct: 18 RQLAVMVGIAASVALGVAVVLWSQKPSYSVLFGNLAAERCSRRSHQVLQQSGIDYEVDPA 77 Query: 80 GSSI 83 I Sbjct: 78 SGLI 81 >gi|89897914|ref|YP_515024.1| type III secretion system protein [Chlamydophila felis Fe/C-56] gi|89331286|dbj|BAE80879.1| type III secretion flagellar biosynthesis M-ring protein [Chlamydophila felis Fe/C-56] Length = 337 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 44/96 (45%), Gaps = 5/96 (5%) Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA--EAI 191 A + +I R + + +A V + +P I P SV++ + S+ +I Sbjct: 70 AKKEQIERDLTMFQSVASATVALSLPTEDDPHII---PQVSVILSTRKNETFSSSLLHSI 126 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL 227 +++++P L +T+ D+ G + + E+ +N L Sbjct: 127 TDYLSSSIPGLTKEHITLSDNLGNVYSPGEISKNSL 162 >gi|62185477|ref|YP_220262.1| type III secretion system protein [Chlamydophila abortus S26/3] gi|62148544|emb|CAH64315.1| putative flagellar-related protein [Chlamydophila abortus S26/3] Length = 337 Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 41/96 (42%), Gaps = 5/96 (5%) Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV--YKSAEAI 191 A + ++ R + + A V + +P + P SV++ + + ++I Sbjct: 70 AKKEQLERDLTMFQPVAHATVALSLPTEDDPHIV---PQVSVILSSHKNEMFSLPLLQSI 126 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL 227 ++++VP L +T+ D+ G + E+ N L Sbjct: 127 TDYLSSSVPGLTKEHITLSDNLGNTYSPGELSTNSL 162 >gi|218680631|ref|ZP_03528528.1| flagellar MS-ring protein [Rhizobium etli CIAT 894] Length = 98 Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 34/86 (39%) Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 E G + P + A LM + + + N V + + Sbjct: 13 ATPEAAGLELPDFAPAAGAPGGALMDGFGSDFGFDSTEDLLSLGDDDGNFNRRVKEGPER 72 Query: 530 RLLHMIEINEERFAKILRKWARSEIE 555 +L M+EINEER AKILRKWA + Sbjct: 73 KLSRMVEINEERAAKILRKWAIDDAA 98 >gi|238764042|ref|ZP_04624997.1| Type III secretion system apparatus lipoprotein [Yersinia kristensenii ATCC 33638] gi|238697713|gb|EEP90475.1| Type III secretion system apparatus lipoprotein [Yersinia kristensenii ATCC 33638] Length = 158 Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 39/104 (37%), Gaps = 2/104 (1%) Query: 114 FDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTA 173 N + ++ V E ++ + + G++ A V I MP K A Sbjct: 4 LFPSNQLVTSPGQEQAKMVYLKEQQLESMLSHMDGVIQADVTIAMPAPTD-GKSSVPHAA 62 Query: 174 SVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVLDSTGKL 216 SV I+ S + I++L+ +P +D ++V+ Sbjct: 63 SVFIKYSPEVNLLSYQPQIKNLIHDGIPGIDFSQISVVMQPANY 106 >gi|207110042|ref|ZP_03244204.1| flagellar MS-ring protein [Helicobacter pylori HPKX_438_CA4C1] Length = 74 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 5/70 (7%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEVSDVNRISVAL 67 S +S+ + +I ++A+ +L+ +L + Y L+ L+ SD I L Sbjct: 5 SSSSIKKQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFEGLDSSDNALILQHL 64 Query: 68 SEANIDFRIS 77 + I +++S Sbjct: 65 QQNQIPYKVS 74 >gi|213425005|ref|ZP_03357755.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 129 Score = 55.0 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 21/147 (14%), Positives = 51/147 (34%), Gaps = 19/147 (12%) Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 + F ++ ++ F S ++ A +L+ ++ L A+ Sbjct: 2 VNSPF---SAVDNTGGELPFWQQQS-FIDQLLAAGRWLLVLVVAWILWRKAVHPQLTRR- 56 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 ++ + + AV L ++ + +NQ R+ + V Q Sbjct: 57 VEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ-- 103 Query: 529 LRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 104 -RIREMSDNDPRVVALVIRQWMSNDHE 129 >gi|29840662|ref|NP_829768.1| type III secretion system protein [Chlamydophila caviae GPIC] gi|29835012|gb|AAP05646.1| secretory protein, YscJ/FliF family [Chlamydophila caviae GPIC] Length = 337 Score = 53.1 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 42/96 (43%), Gaps = 5/96 (5%) Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AI 191 A + +I R + + A V + +P P SV++ + V+ S+ +I Sbjct: 70 AKKEQIERDLTMFHSVANATVALSLPTED---DPDIIPQVSVILSSHKDEVFSSSLLLSI 126 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL 227 +++++P L +T+ D+ G + E ++L Sbjct: 127 VDYLSSSIPGLAKEHITLSDNLGNTYSPGEFSNSLL 162 >gi|212702997|ref|ZP_03311125.1| hypothetical protein DESPIG_01035 [Desulfovibrio piger ATCC 29098] gi|212673585|gb|EEB34068.1| hypothetical protein DESPIG_01035 [Desulfovibrio piger ATCC 29098] Length = 341 Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 53/150 (35%), Gaps = 18/150 (12%) Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 + E +AR ++ S I +V + +P A +++ P Sbjct: 50 ESAVALRHEQETLLARQLEQFSCIRQVKVQLA--------PQSWQPGAVIVLEPSRPEAM 101 Query: 186 KSAEAIRHL--VAAAVP-NLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242 A A+ + V A VP D V V D+ G+ L + + + +E Sbjct: 102 PDAAALDRMLDVLALVPDGPDKRHVLVFDTEGRRLYPDRDTDETA------RREQEMALE 155 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQ 272 + L L DN R+ V+ L+ ++ Sbjct: 156 RQALRVLRPLLA-DNGRTEVLVSLDGTGKE 184 >gi|119468195|ref|ZP_01611321.1| flagellar M-ring protein FliF [Alteromonadales bacterium TW-7] gi|119448188|gb|EAW29452.1| flagellar M-ring protein FliF [Alteromonadales bacterium TW-7] Length = 170 Score = 51.9 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 2/80 (2%) Query: 25 LASVILVPIMLFMAARFFVNS--PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 L V+ + I+ + + N P Y L + + D +I+ L + +++ Sbjct: 17 LLLVLGISILFAIIILKWANEDSPVYRPLIQDMRLVDSVKIADVLDQERVNYYADVKNHM 76 Query: 83 ISVPSSMVGKARIHLAAQGL 102 + V AR+ LA G+ Sbjct: 77 LYVNQEQSELARVSLAKIGI 96 >gi|82940561|emb|CAJ44290.1| putative flagellar M-ring protein FliF [Rhizobium leguminosarum bv. viciae] Length = 78 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 503 SSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 S +D+ S + N V + + +L M+EINEER AKILRKWA + Sbjct: 27 DSTEDLLSLGDD-DGNFNRRVKEGPERKLSRMVEINEERAAKILRKWAIDDAA 78 >gi|207109938|ref|ZP_03244100.1| flagellar MS-ring protein [Helicobacter pylori HPKX_438_CA4C1] Length = 117 Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 9/71 (12%), Positives = 28/71 (39%), Gaps = 1/71 (1%) Query: 393 SAATGINSRRGDTITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLL 451 A G N RGD + +++ +F + ++ T+ M + + + +++ ++ Sbjct: 2 KQAIGYNQNRGDDVAVSNFEFNPMAPMIDNATLSEKIMHKTQKILGSFTPLIKYILVFIV 61 Query: 452 VTFLGLHALRR 462 + + Sbjct: 62 LFIFYKKVIVP 72 >gi|329943244|ref|ZP_08292018.1| type III secretion flagellar biosynthesis M-ring protein [Chlamydophila psittaci Cal10] gi|332287823|ref|YP_004422724.1| type III secretion system protein [Chlamydophila psittaci 6BC] gi|313848395|emb|CBY17399.1| putative flagellar-related protein [Chlamydophila psittaci RD1] gi|325506922|gb|ADZ18560.1| type III secretion system protein [Chlamydophila psittaci 6BC] gi|328814791|gb|EGF84781.1| type III secretion flagellar biosynthesis M-ring protein [Chlamydophila psittaci Cal10] gi|328915084|gb|AEB55917.1| secretory protein, YscJ/FliF family [Chlamydophila psittaci 6BC] Length = 337 Score = 50.8 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 39/96 (40%), Gaps = 5/96 (5%) Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS--VYKSAEAI 191 A + ++ + + + A V + +P + P SV++ + ++I Sbjct: 70 AKKEQLEKDLTMFQPVAHATVALSLPTEDDPHIV---PQVSVILSSHKNELFSLSLLQSI 126 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL 227 +++++P L +T+ D+ G + E N L Sbjct: 127 TDYLSSSLPGLTKEHITLSDNLGNTYSPGEFSTNSL 162 >gi|18072081|gb|AAL58462.1|AF456769_1 putative EscJ protein [Escherichia coli] Length = 111 Score = 50.4 bits (119), Expect = 7e-04, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 38/104 (36%), Gaps = 7/104 (6%) Query: 75 RISDNGS-SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 + +G+ +ISV +A L G P + E+ + + + Sbjct: 2 EMDKSGNVTISVEKEDFVRAITILNNNGFPKKKF-ADIEVIFPPSQLVASPSQENAKINY 60 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 E +I R + I G++ V + + + +A+V++ Sbjct: 61 LKEQDIERLLSKIPGVIDCSVSLNVNNN-----ESQPSSAAVLV 99 >gi|15605452|ref|NP_220238.1| type III secretion system protein [Chlamydia trachomatis D/UW-3/CX] gi|3329175|gb|AAC68314.1| Flagellar M-Ring Protein [Chlamydia trachomatis D/UW-3/CX] gi|297748850|gb|ADI51396.1| FliF [Chlamydia trachomatis D-EC] gi|297749730|gb|ADI52408.1| FliF [Chlamydia trachomatis D-LC] Length = 334 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 42/120 (35%), Gaps = 18/120 (15%) Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AE 189 ++A + ++ + + ++ A V + + SV++ S Sbjct: 68 IQAKKEQLEKDLTLFEPVLQATVALSQEEDSL-------AEISVILSLPQASTLSPSLVH 120 Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKAL 249 +I + +VP L +T+ D G L + + N L + +E ++ L Sbjct: 121 SITDYLTRSVPGLTKEHITLSDQHGNLYSPLFEQSNTLLTT---------SLERSLQTIL 171 >gi|255349112|ref|ZP_05381119.1| type III secretion system protein [Chlamydia trachomatis 70] gi|255503649|ref|ZP_05382039.1| type III secretion system protein [Chlamydia trachomatis 70s] gi|255507328|ref|ZP_05382967.1| type III secretion system protein [Chlamydia trachomatis D(s)2923] gi|289525763|emb|CBJ15244.1| flagellar M-Ring Protein [Chlamydia trachomatis Sweden2] gi|296435336|gb|ADH17514.1| type III secretion system protein [Chlamydia trachomatis E/150] gi|296439053|gb|ADH21206.1| type III secretion system protein [Chlamydia trachomatis E/11023] Length = 334 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 42/120 (35%), Gaps = 18/120 (15%) Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AE 189 ++A + ++ + + ++ A V + + SV++ S Sbjct: 68 IQAKKEQLEKDLTLFEPVLQATVALSQEEDSL-------AEISVILSLPQSSTLSPSLVH 120 Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKAL 249 +I + +VP L +T+ D G L + + N L + +E ++ L Sbjct: 121 SITDYLTRSVPGLTKEHITLSDQHGNLYSPLFEQSNTLLTT---------SLERSLQTIL 171 >gi|237803149|ref|YP_002888343.1| type III secretion system protein [Chlamydia trachomatis B/Jali20/OT] gi|237805070|ref|YP_002889224.1| type III secretion system protein [Chlamydia trachomatis B/TZ1A828/OT] gi|255311549|ref|ZP_05354119.1| type III secretion system protein [Chlamydia trachomatis 6276] gi|255317850|ref|ZP_05359096.1| type III secretion system protein [Chlamydia trachomatis 6276s] gi|231273370|emb|CAX10285.1| flagellar M-Ring Protein [Chlamydia trachomatis B/TZ1A828/OT] gi|231274383|emb|CAX11178.1| flagellar M-Ring Protein [Chlamydia trachomatis B/Jali20/OT] gi|296436264|gb|ADH18438.1| type III secretion system protein [Chlamydia trachomatis G/9768] gi|296437193|gb|ADH19363.1| type III secretion system protein [Chlamydia trachomatis G/11222] gi|296438124|gb|ADH20285.1| type III secretion system protein [Chlamydia trachomatis G/11074] gi|297140625|gb|ADH97383.1| type III secretion system protein [Chlamydia trachomatis G/9301] Length = 334 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 42/120 (35%), Gaps = 18/120 (15%) Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AE 189 ++A + ++ + + ++ A V + + SV++ S Sbjct: 68 IQAKKEQLEKDLTLFEPVLQATVALSQEEDSL-------AEISVILSLPQASTLSPSLVH 120 Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKAL 249 +I + +VP L +T+ D G L + + N L + +E ++ L Sbjct: 121 SITDYLTRSVPGLTKEHITLSDQHGNLYSPLFEQSNTLLTT---------SLERSLQTIL 171 >gi|166154061|ref|YP_001654179.1| type III secretion system protein [Chlamydia trachomatis 434/Bu] gi|166154936|ref|YP_001653191.1| type III secretion system protein [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335263|ref|ZP_07223507.1| type III secretion system protein [Chlamydia trachomatis L2tet1] gi|165930049|emb|CAP03532.1| flagellar M-Ring Protein [Chlamydia trachomatis 434/Bu] gi|165930924|emb|CAP06486.1| flagellar M-Ring Protein [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 334 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 42/120 (35%), Gaps = 18/120 (15%) Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AE 189 ++A + ++ + + ++ A V + + SV++ S Sbjct: 68 IQAKKEQLEKDLTLFEPVLQATVALSQEEDSL-------AEISVILSLPQASTLSPSLVH 120 Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKAL 249 +I + +VP L +T+ D G L + + N L + +E ++ L Sbjct: 121 SITDYLTRSVPGLTKEHITLSDQHGNLYSPLFEQSNTLLTT---------SLERSLQTIL 171 >gi|15834717|ref|NP_296476.1| type III secretion system protein [Chlamydia muridarum Nigg] gi|270284883|ref|ZP_06194277.1| type III secretion system protein [Chlamydia muridarum Nigg] gi|270288911|ref|ZP_06195213.1| type III secretion system protein [Chlamydia muridarum Weiss] gi|7190126|gb|AAF38972.1| conserved hypothetical protein [Chlamydia muridarum Nigg] Length = 332 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 45/117 (38%), Gaps = 14/117 (11%) Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187 + ++A + ++ + I+ A V + ++ A SV++ + Sbjct: 62 QSMEIQAKKEQLENDLTMFDPILQATVALS-------QEEDAPAEISVILSLPHALTLSP 114 Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242 +I + +VP L +T+ D G L + + + L +V +++ ++ Sbjct: 115 SLVHSITDYLMRSVPGLTKEHITLSDQQGNLYSPLLEQSDTL-----LVTSLERSLQ 166 >gi|76789459|ref|YP_328545.1| type III secretion system protein [Chlamydia trachomatis A/HAR-13] gi|76167989|gb|AAX50997.1| FliF [Chlamydia trachomatis A/HAR-13] Length = 334 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 42/120 (35%), Gaps = 18/120 (15%) Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AE 189 ++A + ++ + + ++ A V + + SV++ S Sbjct: 68 IQAKKEQLEKDLTLFEPVLQATVALSQEEDSL-------AEISVILSLPQASTLSPSLVH 120 Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKAL 249 +I + +VP L +T+ D G L + + N L + +E ++ L Sbjct: 121 SITDYLTRSVPGLTKEYITLSDQHGNLYSPLFEQSNTLLTT---------SLERSLQTIL 171 >gi|322632874|gb|EFY29618.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] Length = 163 Score = 48.9 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 38/97 (39%), Gaps = 2/97 (2%) Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 N ++ ++ E I + + G++ A+V I +P + + +V I Sbjct: 5 NQLVVSPQEEQQKINFLKEQRIEGMLSQMEGVINAKVTIALPTYDE-GSNASPSSVAVFI 63 Query: 178 RAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVLDST 213 + ++ I+ L+ ++P L +++L Sbjct: 64 KYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISILMQP 100 >gi|213422413|ref|ZP_03355479.1| putative pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 163 Score = 48.5 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 38/97 (39%), Gaps = 2/97 (2%) Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 N ++ ++ E I + + G++ A+V I +P + + +V I Sbjct: 5 NQLVVSPQEEQQKINFLKEQRIEGMLSQMEGVINAKVTIALPTYDE-GSNASPSSVAVFI 63 Query: 178 RAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVLDST 213 + ++ I+ L+ ++P L +++L Sbjct: 64 KYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISILMQP 100 >gi|167947314|ref|ZP_02534388.1| flagellar basal-body M-ring protein FliF [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 91 Score = 48.1 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 22/54 (40%) Query: 218 TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ 271 N + ++ Q ++ + I +A +G +N R+ V AEL+ Sbjct: 5 DENSSQMSLTTSQFEYTQELEAHFKQRIEDIVAPLVGNENLRAEVTAELDFSQV 58 >gi|290983317|ref|XP_002674375.1| predicted protein [Naegleria gruberi] gi|284087965|gb|EFC41631.1| predicted protein [Naegleria gruberi] Length = 1240 Score = 47.7 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 75/231 (32%), Gaps = 33/231 (14%) Query: 209 VLDSTGKLLTANEMERN---ILGKSLSIVQAIQHE------IEMNINKALAAFLGVDNFR 259 +++ G + AN N + G++ + I +E ++ L+ L Sbjct: 722 IVNGPGLYINANSETFNNGMVAGETYTFQVNITRADGYSTVLESSVQVGLSPVLKATIVN 781 Query: 260 ----SAVVAELNMDTQQIREIVYDPD-----------------SKVERSIRLSKDAQRSE 298 S + + YDP+ KV SK + Sbjct: 782 PSDNSQTGVAVTTKFTATIQESYDPNDSEATLMYGYGFYTESGLKVVSVYSSSKQTNLTL 841 Query: 299 TSQPESAVTV-EQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 Q +VT + + + L S+ ++ +S E+N+ + + +L Sbjct: 842 PYQTGGSVTAFVYVINAQTGNQKELKFSMNVSNPTSGKSASEVNSFVQNLVTSDASVSQL 901 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 SIAV + + + Q + D I +VS ++ R +T+ Sbjct: 902 SIAVQL--LTTSPSSDPTVVQQRTDIKQQVITTLVSKPVTTSAERDTLLTV 950 >gi|301336262|ref|ZP_07224464.1| type III secretion system protein [Chlamydia muridarum MopnTet14] Length = 332 Score = 47.3 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 43/114 (37%), Gaps = 10/114 (8%) Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSAEA 190 +A + +I + + I+ A V + + SV++ + Sbjct: 67 QAKKEQIEKDLTMFDPILQATVALSQGEET-------PAEISVILSLPYAQTLSPSLVHS 119 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN 244 I + +VP L +T+ D G L ++ +E+N + S+ ++ Q + Sbjct: 120 ITDYLMRSVPGLTKEQITLSDQQGNLYSSF-LEQNTTLLTTSLERSFQAILPQK 172 >gi|144897188|emb|CAM74052.1| Flagellar biosynthesis/type III secretory pathway lipoprotein [Magnetospirillum gryphiswaldense MSR-1] Length = 53 Score = 47.3 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 7/51 (13%), Positives = 20/51 (39%) Query: 503 SSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 +++ + ++ V S ++ +++ + E I+R W E Sbjct: 2 GGEEEVIADELIDIDKVEGRVKASSIRKIGEIVDKHPEEALSIIRNWLYQE 52 >gi|322650270|gb|EFY46684.1| putative pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] Length = 106 Score = 46.9 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 4/100 (4%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90 I+ FF+ + +LY L + N++ L + +ID ++G ++ V S Sbjct: 6 IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 A L G P + ++F ++ ++ Sbjct: 65 INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQK 103 >gi|145592719|ref|YP_001157016.1| hypothetical protein Strop_0153 [Salinispora tropica CNB-440] gi|145302056|gb|ABP52638.1| hypothetical protein Strop_0153 [Salinispora tropica CNB-440] Length = 784 Score = 45.4 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 57/392 (14%), Positives = 117/392 (29%), Gaps = 57/392 (14%) Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVP--NLDMGDV 207 A V + + +A++ + ++ S + V+ ++ + DV Sbjct: 130 QRAGVVVALLVGALLTVPATPASAALGVNNVSASPSRIEAGGTTTVSYSIEISDDKPADV 189 Query: 208 TVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELN 267 TV S GKL + R+ + +S + Q + ++ Sbjct: 190 TVTSSNGKLTCVDGCSRSGVNQSQDFQASFQ-----------------------LASDTT 226 Query: 268 MDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSL- 326 I D D + R+ R++ A+ QP A TV+ V ++ Sbjct: 227 NGQATITVTAVDSDGEKSRTTRVTLVAKPEPEPQPSQAQTVKSVSGEVVNQSTGSAVPGA 286 Query: 327 ------ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380 +K + ++ N + +T + RL I ++ T+ L SA Q Sbjct: 287 LVVLRDSRNNKFDTITDNGGNFRFTGSTQNPITPGRLDIGASMDGSTATKTLNASAGQSV 346 Query: 381 IDSYLA-EINKI------------VSAATGINSRRGDTIT-ITSMDFLENQLFNSGTVQV 426 ++ I + + G++ + I + E SG Sbjct: 347 SGQRISLRIQEEPTASPSPSTSIDAAPTVGVDEETEEPIEAAVDVPVAEASDEGSGGTGS 406 Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486 + VGT+++ + LRR N D+ + G + P++ Sbjct: 407 ------LLIILLGGLLVAAGVGTMVLLW-----LRRKENDDEDEAGVNPSGAATGAVPVA 455 Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 G I ++ + Sbjct: 456 RGGYGGADDQTRIVNPTAAAPTMVGGDPSLAD 487 >gi|222476516|gb|ACM61988.1| phenylalanine ammonia-lyase [Lycoris radiata] Length = 708 Score = 45.0 bits (105), Expect = 0.036, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 10/95 (10%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 Y YVKLE L A I ++++GS++ V +AR+ A+ S Sbjct: 42 DYREAYVKLE-------GATLKVAQIAA-VANDGSAVKVELDESARARVK-ASSDWVMDS 92 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 N G + + FG TS + + AL+ E+ R Sbjct: 93 MNKGTDSYGVTTGFGATS-HRRTKQGGALQKELIR 126 >gi|330443917|ref|YP_004376903.1| flagellar M-ring protein [Chlamydophila pecorum E58] gi|328807027|gb|AEB41200.1| flagellar M-ring protein [Chlamydophila pecorum E58] Length = 319 Score = 44.2 bits (103), Expect = 0.050, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 39/96 (40%), Gaps = 5/96 (5%) Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AI 191 A + ++ + + I +A+V + +P ++ SV++ +I Sbjct: 50 AKKEQLEKDLTIFHPIASAKVALALPSDS---EVSHPLKLSVILTLHKDQYLTPMLLFSI 106 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL 227 + ++ P L D+T+ D+ G T ++ N L Sbjct: 107 ADYLCSSFPGLRHEDITLSDNEGNFYTPELIDTNFL 142 >gi|149043451|gb|EDL96902.1| rCG65894 [Rattus norvegicus] Length = 660 Score = 43.9 bits (102), Expect = 0.084, Method: Composition-based stats. Identities = 16/122 (13%), Positives = 37/122 (30%), Gaps = 6/122 (4%) Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292 + QA ++ +N + + E N T Q + P ++ + + + Sbjct: 536 MAQAFNAALQRQVND---PVTKTNQLTNQTNKETNQATNQTNQPTNQPTNQPNQPTKPTN 592 Query: 293 DAQR---SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 + T+QP + N P+ + P + + + + T Sbjct: 593 QPNQPTNQPTNQPTNQTNQPSNQPNQPTNQTNQPNQPNQPTNQPTKPTNQPTQPTQPTKP 652 Query: 350 DN 351 N Sbjct: 653 TN 654 >gi|269302646|gb|ACZ32746.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN] Length = 341 Score = 43.1 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 13/81 (16%), Positives = 34/81 (41%), Gaps = 5/81 (6%) Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLV 195 ++ + + S I +A+V I + + + SV++ + +I + Sbjct: 75 QLEKDLTSFHPIASAKVAIALSTED---DVMSPLHLSVILTLRKEESLTPSLLFSITDYL 131 Query: 196 AAAVPNLDMGDVTVLDSTGKL 216 +++P L +++ D+ G L Sbjct: 132 CSSLPGLKREHISLSDNLGNL 152 >gi|15618769|ref|NP_225055.1| type III secretion system protein [Chlamydophila pneumoniae CWL029] gi|15836393|ref|NP_300917.1| type III secretion system protein [Chlamydophila pneumoniae J138] gi|16752179|ref|NP_445546.1| type III secretion system protein [Chlamydophila pneumoniae AR39] gi|33242220|ref|NP_877161.1| type III secretion system protein [Chlamydophila pneumoniae TW-183] gi|4377177|gb|AAD18998.1| Flagellar M-Ring Protein [Chlamydophila pneumoniae CWL029] gi|7189923|gb|AAF38787.1| conserved hypothetical protein [Chlamydophila pneumoniae AR39] gi|8979234|dbj|BAA99068.1| flagellar M-ring protein [Chlamydophila pneumoniae J138] gi|33236731|gb|AAP98818.1| flagellar motor switch protein [Chlamydophila pneumoniae TW-183] Length = 341 Score = 43.1 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 13/81 (16%), Positives = 34/81 (41%), Gaps = 5/81 (6%) Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLV 195 ++ + + S I +A+V I + + + SV++ + +I + Sbjct: 75 QLEKDLTSFHPIASAKVAIALSTED---DVMSPLHLSVILTLRKEESLTPSLLFSITDYL 131 Query: 196 AAAVPNLDMGDVTVLDSTGKL 216 +++P L +++ D+ G L Sbjct: 132 CSSLPGLKREHISLSDNLGNL 152 >gi|302550206|ref|ZP_07302548.1| ABC transporter substrate-binding protein [Streptomyces viridochromogenes DSM 40736] gi|302467824|gb|EFL30917.1| ABC transporter substrate-binding protein [Streptomyces viridochromogenes DSM 40736] Length = 272 Score = 43.1 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 9/80 (11%) Query: 78 DNGSSISVPSSMVGKARIH--LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135 +G++++VP+ V +AR LAA GL + G E + + +++ Sbjct: 130 KSGATVAVPNDTVNEARALKLLAAHGLITLKDGVGSEA-------TPSDITKNPKKLKFK 182 Query: 136 EGEIARTIQSISGIVAARVH 155 E E A+T +S+ + AA V+ Sbjct: 183 ELEAAQTPRSLDDVDAAVVN 202 >gi|325066922|ref|ZP_08125595.1| DNA/RNA helicase [Actinomyces oris K20] Length = 440 Score = 43.1 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 11/111 (9%) Query: 32 PIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVG 91 + F+A R + L + + ++ L A + + I G + VP V Sbjct: 17 TVAAFLAER-WSPGAEMAVL--CRTRAQMEPVAAELEAAGLPYTIIGLGGMLYVPE--VA 71 Query: 92 KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 R L S G + + FG+ + + + AL E+ RT Sbjct: 72 DVRALLTTA----SDPERGDRVVRLLTGFGIGARDLRV--LAALARELTRT 116 >gi|297198402|ref|ZP_06915799.1| ABC transporter substrate-binding protein [Streptomyces sviceus ATCC 29083] gi|197716092|gb|EDY60126.1| ABC transporter substrate-binding protein [Streptomyces sviceus ATCC 29083] Length = 276 Score = 42.7 bits (99), Expect = 0.16, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 9/80 (11%) Query: 78 DNGSSISVPSSMVGKAR--IHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135 +G++++VP+ V +AR LAA GL + G E + + ++ Sbjct: 134 KSGATVAVPNDAVNEARSLKLLAANGLITLKDGVGSEATPQ-------DIAKNPKNLKFK 186 Query: 136 EGEIARTIQSISGIVAARVH 155 E E A+T++S+ + AA V+ Sbjct: 187 EVEAAQTVRSLDDVDAAVVN 206 >gi|156030967|ref|XP_001584809.1| hypothetical protein SS1G_14264 [Sclerotinia sclerotiorum 1980] gi|154700655|gb|EDO00394.1| hypothetical protein SS1G_14264 [Sclerotinia sclerotiorum 1980 UF-70] Length = 332 Score = 42.3 bits (98), Expect = 0.20, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 39/102 (38%), Gaps = 16/102 (15%) Query: 14 GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73 G +LGR R ++L + I + + ++ + + L L + + AL + ID Sbjct: 55 GDTLGRKRTIMLGAAINMVGAILQSSSYSLGQLIVGRLISGLGFEEAREVVSALDDMPID 114 Query: 74 -FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114 ++ + + I +GL + S ++F Sbjct: 115 SAQVQADIAEI---------------EEGLVITGKGSFCDIF 141 >gi|16266007|gb|AAL16707.1|AF358716_1 putative flagellar M-ring protein [Helicobacter hepaticus] Length = 95 Score = 42.3 bits (98), Expect = 0.20, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 3/91 (3%) Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 + K+ +R Q V N+ V K +E + E N EI K + Sbjct: 7 ESMKKERKRIPPPQIGGVPGVVSNIGPVQGLKD--DEMMEWEKESEVVQNNEIGKKVSSI 64 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQ 378 + L+R+S +V+++ G EV+G + Sbjct: 65 SEHYGVLKRVSASVMID-GTYEEVVGEDGET 94 >gi|14422425|dbj|BAB60832.1| eprK [Escherichia coli] Length = 178 Score = 41.9 bits (97), Expect = 0.25, Method: Composition-based stats. Identities = 11/109 (10%), Positives = 41/109 (37%), Gaps = 2/109 (1%) Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 + ++ + ++ A+E + ++++ + GI+++RVH+ Sbjct: 10 PGKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIISSRVHVSYDVDNG 69 Query: 164 FRKIGARPTASVMIRAINPSVYKSAEA--IRHLVAAAVPNLDMGDVTVL 210 A P ++ + + I+ + + ++ +++V+ Sbjct: 70 DSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSSASVQYENISVV 118 >gi|46205379|ref|ZP_00048615.2| COG1766: Flagellar biosynthesis/type III secretory pathway lipoprotein [Magnetospirillum magnetotacticum MS-1] Length = 101 Score = 41.9 bits (97), Expect = 0.26, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 32/87 (36%) Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 A +G + ++ G + + + L + +++ Sbjct: 13 AAPEGAPALAAGALSADAAALAAPGAVAAGAALPGEAPKLPAPGVAGLLEELEDKMARSP 72 Query: 528 DLRLLHMIEINEERFAKILRKWARSEI 554 RL +I+INEE+ A +L++W E Sbjct: 73 QKRLEQLIDINEEQVAAVLKRWLMREE 99 >gi|213585522|ref|ZP_03367348.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 39 Score = 41.5 bits (96), Expect = 0.34, Method: Composition-based stats. Identities = 12/34 (35%), Positives = 20/34 (58%) Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 K + I+++V+AAVP L +V + D +G L Sbjct: 5 LTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVL 38 >gi|300859157|ref|YP_003784140.1| two-component system sensor kinase protein [Corynebacterium pseudotuberculosis FRC41] gi|300686611|gb|ADK29533.1| two-component system sensor kinase protein [Corynebacterium pseudotuberculosis FRC41] gi|302206851|gb|ADL11193.1| Alkaline phosphatase synthesis sensor protein phoR [Corynebacterium pseudotuberculosis C231] gi|302331413|gb|ADL21607.1| Two-component system sensor kinase [Corynebacterium pseudotuberculosis 1002] gi|308277103|gb|ADO27002.1| Two-component system sensor kinase [Corynebacterium pseudotuberculosis I19] Length = 501 Score = 41.5 bits (96), Expect = 0.35, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 37/90 (41%) Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498 +I V L+ L+ FL ALR LH ++ K G P S G + + Sbjct: 200 IIEIAVLLLMALIAFFLIRRALRPLHEVECTAKAIAQGDLDRRVPEASENTEVGALSSSL 259 Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 ++ S Q + ++ ++++ +V S Sbjct: 260 NSMISRLQSLIVELQDKEAQMRRFVGDASH 289 >gi|262203602|ref|YP_003274810.1| amino acid adenylation domain-containing protein [Gordonia bronchialis DSM 43247] gi|262086949|gb|ACY22917.1| amino acid adenylation domain protein [Gordonia bronchialis DSM 43247] Length = 11233 Score = 41.5 bits (96), Expect = 0.38, Method: Composition-based stats. Identities = 53/321 (16%), Positives = 97/321 (30%), Gaps = 42/321 (13%) Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174 D + G ++ R GEI I ++ G+ AA ++ PD R A Sbjct: 10544 DDIEYMGRADAQVQLRGFRIEYGEIEAAILTVDGVTAAAARVIRPDN---RDEQLIGYA- 10599 Query: 175 VMIRAINPSVYKSAEAIRHLVAAAVPN-LDMGDVTVLD-----STGKLLTANEMERNILG 228 + AIR VA AVP + + V++ + GKL + + Sbjct: 10600 ----LADAGTDLDVHAIRERVARAVPGYMVPDRIVVVERLPLTANGKLDRSALPVPELPD 10655 Query: 229 KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288 + V A + E I A LG + + ++ + S Sbjct: 10656 TGEAGVVAADTDAERVIAAIFADVLGAEQVSV-TESFFDLGGNSLSATRVAARVSDALSA 10714 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINT-KSIAT 347 +S + + A TV+ + ++ +PR +Q + IN ++ Sbjct: 10715 EVSVRDLFTTPTVRGLAATVDSGVAGLAPVTAVVPRPDHIPLSFAQQRMWFINQFDPTSS 10774 Query: 348 THDNYKLERLS--------------IAV----------VVNKGRLTEVLGRSADQGKIDS 383 ++ + RLS + V V+ + D Sbjct: 10775 AYNIPTVVRLSGTLDVDALRAALVDVVVRHEVLRTTFPAVDGRPRQVISDPDDVDADFDW 10834 Query: 384 YLAEINKIVSAAT--GINSRR 402 + + V A G + R Sbjct: 10835 QIVDTRGAVEDAVITGFDVAR 10855 >gi|304315496|ref|YP_003850643.1| isoleucyl-tRNA synthetase [Methanothermobacter marburgensis str. Marburg] gi|9297121|sp|P26499|SYI_METTM RecName: Full=Isoleucyl-tRNA synthetase; AltName: Full=Isoleucine--tRNA ligase; Short=IleRS gi|68525|pir||SYEXI isoleucine-tRNA ligase (EC 6.1.1.5) [validated] - Methanobacterium thermoautotrophicum (strain Marburg) gi|149728|gb|AAA72950.1| transfer RNA-Ile synthetase [Methanothermobacter thermautotrophicus] gi|302588955|gb|ADL59330.1| isoleucyl-tRNA synthetase [Methanothermobacter marburgensis str. Marburg] Length = 1045 Score = 41.5 bits (96), Expect = 0.38, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 48/131 (36%), Gaps = 17/131 (12%) Query: 45 SPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPS 104 + KLE +D + AL FR+ +G I + + + LP Sbjct: 883 RQDMPPVMRKLEEADGAEVKAALESEG-SFRVDLDGRIIVLEPDDI------IFETELPE 935 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSIS-----GIVAARVHIVMP 159 + N+ +E + F T EI A+ E+ R IQ + + AR+ + + Sbjct: 936 NIVNAQFE---GGSVFVDTELTPEIM-SEAMARELVRRIQDMRKDLDLDVE-ARIEVSVK 990 Query: 160 DMGSFRKIGAR 170 FR++ Sbjct: 991 CSPEFRELTEP 1001 >gi|313650160|gb|EFS14573.1| flagellar M-ring domain protein [Shigella flexneri 2a str. 2457T] gi|332756094|gb|EGJ86447.1| flagellar M-ring protein domain protein [Shigella flexneri 4343-70] gi|332757323|gb|EGJ87660.1| flagellar M-ring protein domain protein [Shigella flexneri 2747-71] gi|332757504|gb|EGJ87839.1| flagellar M-ring protein domain protein [Shigella flexneri K-671] gi|332766676|gb|EGJ96880.1| flagellar M-ring FliF basal-body MS(membrane and supramembrane)-ring and collar domain protein [Shigella flexneri 2930-71] gi|333003262|gb|EGK22808.1| flagellar M-ring protein domain protein [Shigella flexneri K-218] gi|333017640|gb|EGK36952.1| flagellar M-ring protein domain protein [Shigella flexneri K-304] Length = 53 Score = 41.5 bits (96), Expect = 0.38, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 3/52 (5%) Query: 504 SNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 ++D R R+ + V Q R+ M + + A ++R+W ++ E Sbjct: 5 LSKDEQLQQRRANQRLGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 53 >gi|153824291|ref|ZP_01976958.1| flagellar M-ring protein [Vibrio cholerae B33] gi|126518186|gb|EAZ75411.1| flagellar M-ring protein [Vibrio cholerae B33] Length = 131 Score = 41.5 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 52/142 (36%), Gaps = 12/142 (8%) Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 M F E ++ V + + +ALV ++ L A+++L N Sbjct: 1 MPFAEPEMEQIVDVPIWEHPNFNDWVRWFASALVIIIVI---LVLVRPAMKKLINPAADN 57 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 ++ G PI + T L+ +D +D F +L N + + Sbjct: 58 DDQMYGP---DGMPIGADGETSLIGSD---IDGGELFEFGSGIDLP---NLHKDEDVLKA 108 Query: 531 LLHMIEINEERFAKILRKWARS 552 + ++ E A++++ W ++ Sbjct: 109 VRALVANEPELAAQVVKNWMQN 130 >gi|322825891|gb|EFZ30715.1| pyruvate dehydrogenase (lipoamide) kinase, putative [Trypanosoma cruzi] Length = 445 Score = 41.2 bits (95), Expect = 0.48, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 11/105 (10%) Query: 95 IHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ-EITRVRALEGE----IARTIQSISGI 149 + LAA+ + + ++ D V + LTS E+ + AL+ E + R + I + Sbjct: 44 MALAAEAIAKERQRAKGDI-DVVMEYPLTSEEFVELNQFYALQKEKRLPL-RNMMHIRNV 101 Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHL 194 VH + ++ R A + P +I+ L Sbjct: 102 EDLYVHAKIIHREYLVRLAQRARA----LTLAPMGLSQMPSIQEL 142 >gi|71666229|ref|XP_820076.1| pyruvate dehydrogenase (lipoamide) kinase [Trypanosoma cruzi strain CL Brener] gi|70885405|gb|EAN98225.1| pyruvate dehydrogenase (lipoamide) kinase, putative [Trypanosoma cruzi] Length = 445 Score = 41.2 bits (95), Expect = 0.48, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 11/105 (10%) Query: 95 IHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ-EITRVRALEGE----IARTIQSISGI 149 + LAA+ + + ++ D V + LTS E+ + AL+ E + R + I + Sbjct: 44 MALAAEAIAKERQRAKGDI-DVVMEYPLTSEEFVELNQFYALQKEKRLPL-RNMMHIRNV 101 Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHL 194 VH + ++ R A + P +I+ L Sbjct: 102 EDLYVHAKIIHREYLVRLAQRARA----LTLAPMGLSQMPSIQEL 142 >gi|92115103|ref|YP_575031.1| cell division protein FtsX [Chromohalobacter salexigens DSM 3043] gi|91798193|gb|ABE60332.1| cell division protein FtsX [Chromohalobacter salexigens DSM 3043] Length = 330 Score = 41.2 bits (95), Expect = 0.53, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 58/156 (37%), Gaps = 28/156 (17%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS------- 68 L + + L +++ + I L + + ++ L +L+ + ++V L Sbjct: 46 RLAKRPMGSLLTMLAIAIALVLPSGLWLALDSARLLDAELD--ESATVTVYLDTRLDERQ 103 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYE---LFDKVNSFG---- 121 ++ R+ + S V AR+ AA+GL G E + N Sbjct: 104 AMDVAARLRE--------QSPVAGARLVTAAEGLAEFQQGLGLEDALSELQDNPLPAAVV 155 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 +T VR +A ++++ G+ ARV + Sbjct: 156 VTPDDTRPEAVRV----LASNLEAVDGVAEARVDLA 187 >gi|326505030|dbj|BAK02902.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 716 Score = 41.2 bits (95), Expect = 0.54, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 49/140 (35%), Gaps = 12/140 (8%) Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 A + RL + G+S + L + AA G ++ GD + E Sbjct: 220 AATLSATLRLDDPPGQSPYTVSANVDLRNVGLPQEAAVGFSASIGDLV--------EKHQ 271 Query: 419 FNSGTVQVSFMDILSRHFATVINALV---FLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 S + Q S D ++ ++I LV L+ + +LG + + E Sbjct: 272 ILSWSFQSSMTDSKTK-GTSLIAGLVSSGLLILLAIAVWLGYRQYVKRKGKNIHDMPEDA 330 Query: 476 GKSILSPPPISSAVTTGLMP 495 ++ L + S + G P Sbjct: 331 DETPLDDQDMDSELEKGTAP 350 >gi|221195362|ref|ZP_03568417.1| signal transduction histidine-protein kinase ArlS [Atopobium rimae ATCC 49626] gi|221184549|gb|EEE16941.1| signal transduction histidine-protein kinase ArlS [Atopobium rimae ATCC 49626] Length = 419 Score = 40.8 bits (94), Expect = 0.55, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 85/233 (36%), Gaps = 28/233 (12%) Query: 258 FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSD 317 F + L +++IR+ D + R Q+SET+ A + +N + Sbjct: 8 FVVTLSVILFASSREIRQKNMD---MLNRYADQYSMQQKSETAGQSRADSKPEN--QTGN 62 Query: 318 RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI----AVVVNKGRLTEVLG 373 + P++ E++ +YE++T T + + LS+ + + LT + Sbjct: 63 QPNNQPQNKPENQPPEDKPDYELSTFYSVTFSSDGNV--LSVFDGEKTIYSNDELTTLAR 120 Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433 + D+G ++ + G T + F++N + G + + Sbjct: 121 QILDEGHPSGRKDNLSYVTRQKDGY----------TLVAFMDNTVSEGG------LRTMM 164 Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486 R+ ++ +V + FL +R L D +K + S PIS Sbjct: 165 RNVL-IVGGASIVVLFFISVFLAGRIIRPLEENDTKQKQFISNASHELKTPIS 216 >gi|145527828|ref|XP_001449714.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124417302|emb|CAK82317.1| unnamed protein product [Paramecium tetraurelia] Length = 5291 Score = 40.8 bits (94), Expect = 0.55, Method: Composition-based stats. Identities = 19/168 (11%), Positives = 60/168 (35%), Gaps = 6/168 (3%) Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNI 245 K E + ++ +V + +V+V + + ++ + N + + +E Sbjct: 1194 KQNEQTQQIIGNSVE--EKKEVSVSEQS-NIINQEIEQVNKIISTKDEKNQTTNETTKEA 1250 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305 K + ++ + + I + + S + Q++ SQ ++ Sbjct: 1251 QKTNETIQQSNKVDQQKDLKIQQNDKVINQTGETTQRSNQASQQTDSTIQKTNKSQQQTD 1310 Query: 306 VTVEQN---MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 ++QN + + +S++ T++ +Q+N + + + Sbjct: 1311 EIIQQNNNSIQQTDEIIQQSNKSIQQTNETSQQNNKAVQQTNETIQQN 1358 >gi|119387609|ref|YP_918643.1| binding-protein-dependent transport systems inner membrane component [Paracoccus denitrificans PD1222] gi|119378184|gb|ABL72947.1| binding-protein-dependent transport systems inner membrane component [Paracoccus denitrificans PD1222] Length = 240 Score = 40.8 bits (94), Expect = 0.64, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 24/48 (50%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD 49 +LDQ+ ++ T L R + ++AS I++ + +++ P + Sbjct: 27 GLLDQITIYWDDITYLTRQHVFLVASSGGAAILVGVPVGIWLSRPSME 74 >gi|90424239|ref|YP_532609.1| methyl-accepting chemotaxis sensory transducer [Rhodopseudomonas palustris BisB18] gi|90106253|gb|ABD88290.1| methyl-accepting chemotaxis sensory transducer [Rhodopseudomonas palustris BisB18] Length = 560 Score = 40.8 bits (94), Expect = 0.65, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 42/108 (38%) Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498 V+ AL ++G V F+ L ++ A GG+ + P A G M + Sbjct: 191 VVGALAVVIGIAAVLFVIFRVAAGLTGLNGALAKMAGGQLDIDIPGAGRADEIGDMAKNV 250 Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546 + + ++++ ++ + ++Q + M + E +I+ Sbjct: 251 VTIRQNSENAARADAEAKAERDRQAAEQRKQEMYRMADDFEGAVGEII 298 >gi|19924077|ref|NP_612547.1| dynamin-3 [Rattus norvegicus] gi|190358903|sp|Q08877|DYN3_RAT RecName: Full=Dynamin-3; AltName: Full=Dynamin, testicular; AltName: Full=T-dynamin gi|6409115|gb|AAF07848.1|AF201839_1 dynamin IIIbb isoform [Rattus norvegicus] Length = 869 Score = 40.8 bits (94), Expect = 0.71, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 82/233 (35%), Gaps = 28/233 (12%) Query: 125 FMQEITRVRALEGEIA-RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 Q E+A + + + A+ + + SF + A +++P Sbjct: 597 TEQRNVYKDYRSLELACDSQEDVDSWKASLLRAGVYPDKSFTENDENGQAENF--SMDPQ 654 Query: 184 VYKSAEAIRHLVAA-------AVPNLDMGDVT--VLDS-----TGKLLT---ANEMERNI 226 + + E IR+LV + + +L + ++++ +LL ++E + + Sbjct: 655 LERQVETIRNLVDSYMSIINKCIRDLIPKTIMHLMINNVKDFINSELLAQLYSSEDQNTL 714 Query: 227 LGKSLSIVQAIQHEIE--MNINKALAAFLGVDNFRSAVVA--ELNMDTQQIREIVYDPDS 282 + +S+ Q + + +ALA ++ + A ++ Q P Sbjct: 715 MEESVEQAQRRDEMLRMYQALKEALAIIGDINTVTVSTPAPPPVDDSWLQHSRRSPPPSP 774 Query: 283 KVERSIRLSKDAQRSETSQPESA----VTVEQNMPHVSDRKVPLPRSLENTDK 331 +R + LS R +S+ + P V R PLP ++D Sbjct: 775 TTQRRLTLSAPLPRPASSRGPAPAIPSPGPHSGAPPVPFRPGPLPPFPNSSDS 827 >gi|391872|dbj|BAA03161.1| testicular dynamin [Rattus norvegicus] Length = 848 Score = 40.4 bits (93), Expect = 0.75, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 82/233 (35%), Gaps = 28/233 (12%) Query: 125 FMQEITRVRALEGEIA-RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 Q E+A + + + A+ + + SF + A +++P Sbjct: 587 TEQRNVYKDYRSLELACDSQEDVDSWKASLLRAGVYPDKSFTENDENGQAENF--SMDPQ 644 Query: 184 VYKSAEAIRHLVAA-------AVPNLDMGDVT--VLDS-----TGKLLT---ANEMERNI 226 + + E IR+LV + + +L + ++++ +LL ++E + + Sbjct: 645 LERQVETIRNLVDSYMSIINKCIRDLIPKTIMHLMINNVKDFINSELLAQLYSSEDQNTL 704 Query: 227 LGKSLSIVQAIQHEIE--MNINKALAAFLGVDNFRSAVVA--ELNMDTQQIREIVYDPDS 282 + +S+ Q + + +ALA ++ + A ++ Q P Sbjct: 705 MEESVEQAQRRDEMLRMYQALKEALAIIGDINTVTVSTPAPPPVDDSWLQHSRRSPPPSP 764 Query: 283 KVERSIRLSKDAQRSETSQPESA----VTVEQNMPHVSDRKVPLPRSLENTDK 331 +R + LS R +S+ + P V R PLP ++D Sbjct: 765 TTQRRLTLSAPLPRPASSRGPAPAIPSPGPHSGAPPVPFRPGPLPPFPNSSDS 817 >gi|149058249|gb|EDM09406.1| dynamin 3, isoform CRA_a [Rattus norvegicus] Length = 463 Score = 40.4 bits (93), Expect = 0.79, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 82/233 (35%), Gaps = 28/233 (12%) Query: 125 FMQEITRVRALEGEIA-RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 Q E+A + + + A+ + + SF + A +++P Sbjct: 191 TEQRNVYKDYRSLELACDSQEDVDSWKASLLRAGVYPDKSFTENDENGQAENF--SMDPQ 248 Query: 184 VYKSAEAIRHLVAA-------AVPNLDMGDVT--VLDS-----TGKLLT---ANEMERNI 226 + + E IR+LV + + +L + ++++ +LL ++E + + Sbjct: 249 LERQVETIRNLVDSYMSIINKCIRDLIPKTIMHLMINNVKDFINSELLAQLYSSEDQNTL 308 Query: 227 LGKSLSIVQAIQHEIE--MNINKALAAFLGVDNFRSAVVA--ELNMDTQQIREIVYDPDS 282 + +S+ Q + + +ALA ++ + A ++ Q P Sbjct: 309 MEESVEQAQRRDEMLRMYQALKEALAIIGDINTVTVSTPAPPPVDDSWLQHSRRSPPPSP 368 Query: 283 KVERSIRLSKDAQRSETSQPESA----VTVEQNMPHVSDRKVPLPRSLENTDK 331 +R + LS R +S+ + P V R PLP ++D Sbjct: 369 TTQRRLTLSAPLPRPASSRGPAPAIPSPGPHSGAPPVPFRPGPLPPFPNSSDS 421 >gi|322650271|gb|EFY46685.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] Length = 131 Score = 40.4 bits (93), Expect = 0.80, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 30/69 (43%), Gaps = 2/69 (2%) Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDM 204 + G++ A+V I +P + + +V I+ ++ I+ L+ ++P L Sbjct: 1 MEGVINAKVTIALPTYDE-GSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQY 59 Query: 205 GDVTVLDST 213 +++L Sbjct: 60 SKISILMQP 68 >gi|260803083|ref|XP_002596421.1| hypothetical protein BRAFLDRAFT_121263 [Branchiostoma floridae] gi|229281676|gb|EEN52433.1| hypothetical protein BRAFLDRAFT_121263 [Branchiostoma floridae] Length = 877 Score = 40.4 bits (93), Expect = 0.80, Method: Composition-based stats. Identities = 30/229 (13%), Positives = 75/229 (32%), Gaps = 27/229 (11%) Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM-----IRA 179 F QE V ++ + +++ + + + G + + T++ + + Sbjct: 591 FNQESRNVYKDYKQLELSAETLDEVDSWKA--SFLRAGVYPERNTDTTSAESSPQGDLGS 648 Query: 180 INPSVYKSAEAIRHLVAA-------AVPNLDMGDVT---VLDSTGKLLTANEMERNILGK 229 ++P + + E IR+LV + + +L + V D+ + + G Sbjct: 649 MDPQLERQVETIRNLVDSYMGIITKTIRDLVPKTIMHMIVNDTKEFIQSEMLAHLYSSGD 708 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 S+++ + E + + ++ ++NM T +P S Sbjct: 709 QASMME--ESATEAQRREEMLRMYHSLKEALKIIGDINMTTVS------EPCPPPVDSDS 760 Query: 290 LSKDAQRSETS--QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQS 336 S+ QP + T + P P + +++ Q Sbjct: 761 WLPPPSPSQNRGLQPPPSPTRQLAPPTSPTSGRVSPGGSPSLNRRPSQR 809 >gi|190894993|ref|YP_001985286.1| D-amino acid dehydrogenase small subunit [Rhizobium etli CIAT 652] gi|218516485|ref|ZP_03513325.1| D-amino acid dehydrogenase small subunit [Rhizobium etli 8C-3] gi|190700654|gb|ACE94736.1| D-amino-acid dehydrogenase protein, small subunit [Rhizobium etli CIAT 652] gi|327193284|gb|EGE60190.1| D-amino-acid dehydrogenase protein, small subunit [Rhizobium etli CNPAF512] Length = 422 Score = 40.4 bits (93), Expect = 0.81, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 50/132 (37%), Gaps = 12/132 (9%) Query: 51 LYVKLEVSDVNRI-SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNS 109 L+ + D + AL+ I + + D I V ++ R + GL + + Sbjct: 140 LFRTQQQLDASAKDVKALAADGIPYEVLDQDGCIRVEPALRH-VREKIVG-GLLTPKDET 197 Query: 110 GYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA 169 G + F N+ E VR G TI+++ + A RV V+ D + Sbjct: 198 G-DCFKFTNALAA---QAEALGVRFAYG---TTIKALD-VEAGRVRGVVTDRDP-DRERQ 248 Query: 170 RPTASVMIRAIN 181 R A ++ A+ Sbjct: 249 RMRAEAVVVALG 260 >gi|330501227|ref|YP_004378096.1| methyl-accepting chemotaxis protein [Pseudomonas mendocina NK-01] gi|328915513|gb|AEB56344.1| methyl-accepting chemotaxis protein [Pseudomonas mendocina NK-01] Length = 658 Score = 40.4 bits (93), Expect = 0.82, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 42/129 (32%), Gaps = 4/129 (3%) Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI---NALVFLVGTLLVTFLGLHAL 460 D +M F ++ + ++ T + +AL L+ + V +L L Sbjct: 274 DEFYSVAMPFAGGPWTVLASMPREEIQAVTWRVGTQLAIGSALTLLLAVIAVVWLLRRKL 333 Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520 R L ++ + G P S G + + + + + R+ ++ Sbjct: 334 RPLGDLVQQAQALGAGHLGARMAPSSDD-EIGELARSFNRMGEALASMVAGIRSAAQDVS 392 Query: 521 SYVSKQSDL 529 + S L Sbjct: 393 ARSQAMSTL 401 >gi|149058250|gb|EDM09407.1| dynamin 3, isoform CRA_b [Rattus norvegicus] Length = 442 Score = 40.4 bits (93), Expect = 0.82, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 82/233 (35%), Gaps = 28/233 (12%) Query: 125 FMQEITRVRALEGEIA-RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 Q E+A + + + A+ + + SF + A +++P Sbjct: 181 TEQRNVYKDYRSLELACDSQEDVDSWKASLLRAGVYPDKSFTENDENGQAENF--SMDPQ 238 Query: 184 VYKSAEAIRHLVAA-------AVPNLDMGDVT--VLDS-----TGKLLT---ANEMERNI 226 + + E IR+LV + + +L + ++++ +LL ++E + + Sbjct: 239 LERQVETIRNLVDSYMSIINKCIRDLIPKTIMHLMINNVKDFINSELLAQLYSSEDQNTL 298 Query: 227 LGKSLSIVQAIQHEIE--MNINKALAAFLGVDNFRSAVVA--ELNMDTQQIREIVYDPDS 282 + +S+ Q + + +ALA ++ + A ++ Q P Sbjct: 299 MEESVEQAQRRDEMLRMYQALKEALAIIGDINTVTVSTPAPPPVDDSWLQHSRRSPPPSP 358 Query: 283 KVERSIRLSKDAQRSETSQPESA----VTVEQNMPHVSDRKVPLPRSLENTDK 331 +R + LS R +S+ + P V R PLP ++D Sbjct: 359 TTQRRLTLSAPLPRPASSRGPAPAIPSPGPHSGAPPVPFRPGPLPPFPNSSDS 411 >gi|320531921|ref|ZP_08032829.1| UvrD/REP helicase [Actinomyces sp. oral taxon 171 str. F0337] gi|320135863|gb|EFW27903.1| UvrD/REP helicase [Actinomyces sp. oral taxon 171 str. F0337] Length = 886 Score = 40.4 bits (93), Expect = 0.85, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 10/108 (9%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKA 93 ++ A + S L + ++ I+ L EA + + I G + VP V Sbjct: 430 VIAFLAERWSPSAEMAVL--CRTRAQMDPIAAELEEAGLPYTIVGLGGMLYVPE--VADV 485 Query: 94 RIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 R L S G + + FG+ + + AL E+ R Sbjct: 486 RALLTVA----SDPERGDRVVRLLTGFGIGASDLRA--LAALARELTR 527 >gi|326771896|ref|ZP_08231181.1| UvrD/REP helicase [Actinomyces viscosus C505] gi|326638029|gb|EGE38930.1| UvrD/REP helicase [Actinomyces viscosus C505] Length = 1142 Score = 40.4 bits (93), Expect = 0.90, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 38/108 (35%), Gaps = 10/108 (9%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKA 93 ++ A + S L + ++ I+ L A + + I G + VP V Sbjct: 431 VVAFLAERWSPSAEMAVL--CRTRAQMDPIAAELEAAGLPYTIIGLGGMLYVPE--VADV 486 Query: 94 RIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 R L A S G + + FG+ + + +L E+ R Sbjct: 487 RALLTAA----SDPERGDRVVRLLTGFGIGARDLRA--LASLARELTR 528 >gi|166999370|ref|ZP_02265209.1| type III secretion protein [Burkholderia mallei PRL-20] gi|238563894|ref|ZP_04610787.1| type III secretion protein [Burkholderia mallei GB8 horse 4] gi|238519737|gb|EEP83205.1| type III secretion protein [Burkholderia mallei GB8 horse 4] gi|243064444|gb|EES46630.1| type III secretion protein [Burkholderia mallei PRL-20] Length = 187 Score = 40.4 bits (93), Expect = 0.91, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 4/53 (7%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDF-RISDNGS---SISVPSSMVGKARIHL 97 LY L D N + AL + +D + + +G +++V + KA L Sbjct: 36 QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVL 88 >gi|71651860|ref|XP_814598.1| pyruvate dehydrogenase (lipoamide) kinase [Trypanosoma cruzi strain CL Brener] gi|70879586|gb|EAN92747.1| pyruvate dehydrogenase (lipoamide) kinase, putative [Trypanosoma cruzi] Length = 231 Score = 40.0 bits (92), Expect = 0.93, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 11/105 (10%) Query: 95 IHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ-EITRVRALEGE----IARTIQSISGI 149 + LAA+ + + ++ D V + LTS E+ + AL+ E + R + I + Sbjct: 44 MALAAEAIAKERQRAKGDI-DVVMEYPLTSEEFVELNQFYALQKEKRLPL-RNMMHIRNV 101 Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHL 194 VH + ++ R A + P +I+ L Sbjct: 102 EDLYVHAKIIHREYLVRLAQRARA----LTLAPMGLSQMPSIQEL 142 >gi|116198433|ref|XP_001225028.1| hypothetical protein CHGG_07372 [Chaetomium globosum CBS 148.51] gi|88178651|gb|EAQ86119.1| hypothetical protein CHGG_07372 [Chaetomium globosum CBS 148.51] Length = 1017 Score = 40.0 bits (92), Expect = 0.94, Method: Composition-based stats. Identities = 30/218 (13%), Positives = 63/218 (28%), Gaps = 24/218 (11%) Query: 126 MQEITRVRALEG--EIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAINP 182 +I RA E E+ ++ + + V + A+ A + Sbjct: 633 QNKIQEKRAEESTCELEAQLRELEAVPEKLVKEHRAKHDEWASEKAKFDKARASFKTFKS 692 Query: 183 SVYKSAEAI----------RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS 232 S+ K +A+ R+ +AA + +D + D+ + L E R + Sbjct: 693 SIDKQIKALDEEKATLQAKRNKIAARIAKVDDEHARITDANARGLNEAERRRQERANLAA 752 Query: 233 IVQAIQHEIEMNINKA-LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + + + + L + +E YD + Sbjct: 753 ELARAEQNLRDRVQALRLNNATKQAQVHAMAAHMQEYLASFQKEPTYDMGPQP------- 805 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT 329 ++ P + + Q P + V +P S T Sbjct: 806 ---NHFTSAGPWATIPAPQFNPQPAWPPVSMPMSTHAT 840 >gi|126433866|ref|YP_001069557.1| adenylyl cyclase class-3/4/guanylyl cyclase [Mycobacterium sp. JLS] gi|126233666|gb|ABN97066.1| adenylyl cyclase class-3/4/guanylyl cyclase [Mycobacterium sp. JLS] Length = 1053 Score = 40.0 bits (92), Expect = 0.99, Method: Composition-based stats. Identities = 37/204 (18%), Positives = 77/204 (37%), Gaps = 15/204 (7%) Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD------------TIT 407 AV +K + + ++ ID LAE +++V + GD I Sbjct: 706 AVAGDKASVAIAMAGLVNEQLIDGTLAEASRLVDDQMVLLESIGDPTLTVGLALFPAAIK 765 Query: 408 ITSMDFLENQLFNSGTVQVSFMD-ILSRHFATVINALVFLVGTLLVTFLGLHALRR--LH 464 I +F E + ++ D L + AL + + +LG RR Sbjct: 766 ILIGEFAEALRTCDMVIDLAHDDPALGGYVLGAPLALAYAMRCTACWWLGRPGWRRDFDR 825 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 ++ A + + ++ + +A+ +G++ D+ AL +S++ + R+ + Sbjct: 826 AVEMAGEADPISRAAVMIYTYGNAIASGVIAADDAALRNSDEALDIAQRSADDIAYGFAL 885 Query: 525 KQSDLRLLHMIEINEERFAKILRK 548 S LL +R ++LR+ Sbjct: 886 FASAGVLLDHPSGRTKRAVELLRQ 909 >gi|323159999|gb|EFZ45963.1| lipoprotein prgK [Escherichia coli E128010] gi|323162552|gb|EFZ48402.1| lipoprotein prgK [Escherichia coli E128010] gi|323163401|gb|EFZ49228.1| lipoprotein prgK [Escherichia coli E128010] Length = 178 Score = 40.0 bits (92), Expect = 1.0, Method: Composition-based stats. Identities = 11/109 (10%), Positives = 40/109 (36%), Gaps = 2/109 (1%) Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 + ++ + ++ A+E + ++++ + GI+++RVH+ Sbjct: 10 PGKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIISSRVHVSYDVDNG 69 Query: 164 FRKIGARPTASVMIRAINPSVYKSAEA--IRHLVAAAVPNLDMGDVTVL 210 A P ++ + + I+ + ++ +++V+ Sbjct: 70 DSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNNSASVQYENISVV 118 >gi|270488958|ref|ZP_06206032.1| conserved domain protein [Yersinia pestis KIM D27] gi|270337462|gb|EFA48239.1| conserved domain protein [Yersinia pestis KIM D27] Length = 92 Score = 40.0 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 4/85 (4%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSS-ISVPSSM 89 ++ + ++ + LY L + N++ L I+ +I +G ++V Sbjct: 7 MLAIVLMTLSLSGCDME-LYSGLSEGEANQMLALLMLHQINAEKQIEKSGMVGLTVDKRQ 65 Query: 90 VGKARIHLAAQGLPSSSSNSGYELF 114 A L G P + ELF Sbjct: 66 FINAVELLRQNGFPRQRFITVDELF 90 >gi|19553805|ref|NP_601807.1| two-component system, sensory transduction histidine kinase [Corynebacterium glutamicum ATCC 13032] gi|62391445|ref|YP_226847.1| two component sensor kinase [Corynebacterium glutamicum ATCC 13032] gi|21325378|dbj|BAB99999.1| Two-component system, sensory transduction histidine kinases [Corynebacterium glutamicum ATCC 13032] gi|41326786|emb|CAF21268.1| probable two component sensor kinase [Corynebacterium glutamicum ATCC 13032] Length = 485 Score = 40.0 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 43/131 (32%), Gaps = 14/131 (10%) Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV--TFLGL 457 + GD IT+ G ++L R + ++ +L+ FL Sbjct: 158 EKNGDIITVV------------GKSMGRETNLLYRLVMVQMIIGALILVAILITSLFLVR 205 Query: 458 HALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS 517 +LR L +++ GG P G + N + Q ++ ++ Sbjct: 206 RSLRPLREVEETATRIAGGDLDRRVPQWPMTTEVGQLSNALNIMLEQLQASILTAQQKEA 265 Query: 518 RINSYVSKQSD 528 ++ +V S Sbjct: 266 QMRRFVGDASH 276 >gi|145296602|ref|YP_001139423.1| hypothetical protein cgR_2510 [Corynebacterium glutamicum R] gi|140846522|dbj|BAF55521.1| hypothetical protein [Corynebacterium glutamicum R] Length = 485 Score = 40.0 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 43/131 (32%), Gaps = 14/131 (10%) Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV--TFLGL 457 + GD IT+ G ++L R + ++ +L+ FL Sbjct: 158 EKNGDIITVV------------GKSMGRETNLLYRLVMVQMIIGALILVAILITSLFLVR 205 Query: 458 HALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS 517 +LR L +++ GG P G + N + Q ++ ++ Sbjct: 206 RSLRPLREVEETATRIAGGDLDRRVPQWPMTTEVGQLSNALNIMLEQLQASILTAQQKEA 265 Query: 518 RINSYVSKQSD 528 ++ +V S Sbjct: 266 QMRRFVGDASH 276 >gi|218780299|ref|YP_002431617.1| rhomboid family protein [Desulfatibacillum alkenivorans AK-01] gi|218761683|gb|ACL04149.1| Rhomboid family protein [Desulfatibacillum alkenivorans AK-01] Length = 285 Score = 39.6 bits (91), Expect = 1.2, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 6/79 (7%) Query: 48 YDNLY-VKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAA---QG 101 L+ L + N + L + I + ++ G I VP +A + A + Sbjct: 1 MTPLFIKNLPDNKANLYGLILEASKIAYEFKRAEEGWQILVPQKDHDRAFAQITAYTGEN 60 Query: 102 LPSSSSNSGYELFDKVNSF 120 LP + F + Sbjct: 61 LPQDLDEPEWPQFKTYSGL 79 >gi|145521690|ref|XP_001446697.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124414181|emb|CAK79300.1| unnamed protein product [Paramecium tetraurelia] Length = 1670 Score = 39.6 bits (91), Expect = 1.3, Method: Composition-based stats. Identities = 18/178 (10%), Positives = 61/178 (34%), Gaps = 15/178 (8%) Query: 186 KSAEAIRHLVAAAVPNLDMGDVTV----------LDSTGKLLTANEMERNILGKSLSIVQ 235 K E + ++ +V + +V+V ++ K+++ + + ++ Sbjct: 22 KQNEQTQQIIGNSVE--EKKEVSVSEQSNIINQEIEQVNKIISTKDEKNQTTNETTKQTN 79 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 + K + ++ + + I + + S + Q Sbjct: 80 DVISTTNREAQKTNETIQQSNKVDQQKDLKIQQNDKVINQTGETTQRSNQASQQTDSTIQ 139 Query: 296 RSETSQPESAVTVEQN---MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 ++ SQ ++ ++QN + + +S++ T++ +Q+N + + + Sbjct: 140 KTNKSQQQTDEIIQQNNNSIQQTDEIIQQSNKSIQQTNETSQQNNKAVQQTNETIQQN 197 >gi|221502463|gb|EEE28190.1| conserved hypothetical protein [Toxoplasma gondii VEG] Length = 671 Score = 39.6 bits (91), Expect = 1.3, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 75/232 (32%), Gaps = 24/232 (10%) Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 AR+ + +G +S + +E V A +G+ AR + S G Sbjct: 204 DDARVLTSGEGKEKASVA----FQGDDARVLTSDKEKEKVSV-AFQGDDARVLTSGEGKE 258 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDM------ 204 A V D + ASV + + V S E + A D Sbjct: 259 KASVAFQGDDARVLTSGEGKEKASVAFQGDDARVLTSGEGKEK-ASVAFQGDDARVLTSD 317 Query: 205 ---GDVTVLDS--TGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 +V+V ++LT++E + + + + I L + R Sbjct: 318 KEKENVSVASQGDDARVLTSDEGDAGLDAAPRQEDGSFNLQSIQRIVDELKK--EQEAAR 375 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311 + E T++I E ++ + + KD SE ES V+ Q Sbjct: 376 GSTTDEPQQKTEEITE-----GAEARETEQKVKDFVYSEGVDMESYVSGSQG 422 >gi|221482158|gb|EEE20519.1| hypothetical protein TGGT1_125960 [Toxoplasma gondii GT1] Length = 671 Score = 39.6 bits (91), Expect = 1.3, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 75/232 (32%), Gaps = 24/232 (10%) Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 AR+ + +G +S + +E V A +G+ AR + S G Sbjct: 204 DDARVLTSGEGKEKASVA----FQGDDARVLTSDKEKEKVSV-AFQGDDARVLTSGEGKE 258 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDM------ 204 A V D + ASV + + V S E + A D Sbjct: 259 KASVAFQGDDARVLTSGEGKEKASVAFQGDDARVLTSGEGKEK-ASVAFQGDDARVLTSD 317 Query: 205 ---GDVTVLDS--TGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 +V+V ++LT++E + + + + I L + R Sbjct: 318 KEKENVSVASQGDDARVLTSDEGDAGLDAAPRQEDGSFNLQSIQRIVDELKK--EQEAAR 375 Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311 + E T++I E ++ + + KD SE ES V+ Q Sbjct: 376 GSTTDEPQQKTEEITE-----GAEARETEQKVKDFVYSEGVDMESYVSGSQG 422 >gi|239816714|ref|YP_002945624.1| amino acid adenylation domain protein [Variovorax paradoxus S110] gi|239803291|gb|ACS20358.1| amino acid adenylation domain protein [Variovorax paradoxus S110] Length = 1358 Score = 39.6 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 15/97 (15%) Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 G + +I R GE+A I+ + G+ A V + GA+ +A ++RA Sbjct: 882 LGRSDDQVKIRGYRVEPGEVAGRIRELDGVADAVVV---------AEQGAQESA--VLRA 930 Query: 180 I---NPSVYKSAEAIRHLVAAAVPN-LDMGDVTVLDS 212 P E +RH +A ++P + + +LD+ Sbjct: 931 YVVARPGTSLDVEELRHALADSLPAWMVPERIVLLDA 967 >gi|323704192|ref|ZP_08115771.1| sporulation protein YqfD [Thermoanaerobacterium xylanolyticum LX-11] gi|323536258|gb|EGB26030.1| sporulation protein YqfD [Thermoanaerobacterium xylanolyticum LX-11] Length = 401 Score = 39.6 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 13/84 (15%) Query: 17 LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76 L R R+L+L ++ V + + + +S+ + I L + + + Sbjct: 86 LKRRRMLVLGAIACVILAYIFSMFIWSIEID-----GGQNISEAS-IISELDKLGLKAGV 139 Query: 77 SDNGSSI-------SVPSSMVGKA 93 + +I V V Sbjct: 140 LKSSVNIHKIQQEFLVDEKDVAWI 163 >gi|225464214|ref|XP_002265023.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 662 Score = 39.6 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 2/83 (2%) Query: 255 VDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPH 314 N+ S V +L+ + QI E PDS V R+ + S +Q S+ T + Sbjct: 11 FGNYTSEVSVDLDRERHQILEEADSPDSSVV--ERVLPEMAESPKNQTSSSATSGEVQTE 68 Query: 315 VSDRKVPLPRSLENTDKKEEQSN 337 V S + E N Sbjct: 69 FEPELVGGSGSDDRASDSREGVN 91 >gi|291397423|ref|XP_002715664.1| PREDICTED: dynamin 3-like isoform 1 [Oryctolagus cuniculus] Length = 863 Score = 39.6 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 62/177 (35%), Gaps = 25/177 (14%) Query: 180 INPSVYKSAEAIRHLVAA-------AVPNLDMGDVT--VLDS-----TGKLLTA--NEME 223 ++P + + E IR+LV + + +L + ++++ +LL + + Sbjct: 645 MDPQLERQVETIRNLVDSYMSIINKCIRDLIPKTIMHLMINNVKDFINSELLAQLYSSED 704 Query: 224 RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE-----LNMDTQQIREIVY 278 +N L + + + E+ A + + + +A V+ ++ Q Sbjct: 705 QNTLMEESAEQAQRRDEMLRMYQALKEALVIIGDINTATVSTPAPPPVDDSWIQHSRRSP 764 Query: 279 DPDSKVERSIRLSKDAQRSETSQPESA----VTVEQNMPHVSDRKVPLPRSLENTDK 331 P +R LS R + + + P V R PLP ++D Sbjct: 765 PPSPTAQRRPTLSAPLPRPTSGRGPAPAIPSPGPHSGAPPVPFRPGPLPPFPNSSDS 821 >gi|291397425|ref|XP_002715665.1| PREDICTED: dynamin 3-like isoform 2 [Oryctolagus cuniculus] Length = 859 Score = 39.6 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 62/177 (35%), Gaps = 25/177 (14%) Query: 180 INPSVYKSAEAIRHLVAA-------AVPNLDMGDVT--VLDS-----TGKLLTA--NEME 223 ++P + + E IR+LV + + +L + ++++ +LL + + Sbjct: 641 MDPQLERQVETIRNLVDSYMSIINKCIRDLIPKTIMHLMINNVKDFINSELLAQLYSSED 700 Query: 224 RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE-----LNMDTQQIREIVY 278 +N L + + + E+ A + + + +A V+ ++ Q Sbjct: 701 QNTLMEESAEQAQRRDEMLRMYQALKEALVIIGDINTATVSTPAPPPVDDSWIQHSRRSP 760 Query: 279 DPDSKVERSIRLSKDAQRSETSQPESA----VTVEQNMPHVSDRKVPLPRSLENTDK 331 P +R LS R + + + P V R PLP ++D Sbjct: 761 PPSPTAQRRPTLSAPLPRPTSGRGPAPAIPSPGPHSGAPPVPFRPGPLPPFPNSSDS 817 >gi|108798209|ref|YP_638406.1| adenylate/guanylate cyclase [Mycobacterium sp. MCS] gi|119867305|ref|YP_937257.1| adenylyl cyclase class-3/4/guanylyl cyclase [Mycobacterium sp. KMS] gi|108768628|gb|ABG07350.1| adenylate/guanylate cyclase [Mycobacterium sp. MCS] gi|119693394|gb|ABL90467.1| adenylyl cyclase class-3/4/guanylyl cyclase [Mycobacterium sp. KMS] Length = 1050 Score = 39.2 bits (90), Expect = 1.6, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 79/200 (39%), Gaps = 15/200 (7%) Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD------------TITITSM 411 +K + +G ++ ID LAE +++ T + GD + + + Sbjct: 707 DKASVAIAMGGLINEQLIDGRLAEASQLADELTVLLESIGDPTLTVGLALFPAAVKVQTG 766 Query: 412 DFLENQLFNSGTVQVSFMD-ILSRHFATVINALVFLVGTLLVTFLGLHALRR--LHNIDD 468 +FLE ++++ D +L + AL + +LG RR + Sbjct: 767 EFLEVNRCCDLVIELAHDDPVLGGYVIGAPLALALAIRCTAAWWLGRPGWRRDFDRAVAM 826 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 A + + ++ + ++A+ +G++ D+ AL +S + + R++ + S Sbjct: 827 AAEADPISRAAVMIYTYTNAIASGVIAADDAALHNSEEALAVTQRSVDDIAYGFALYGSA 886 Query: 529 LRLLHMIEINEERFAKILRK 548 L+ ER ++LR+ Sbjct: 887 GVLIDSGSGQRERAVELLRQ 906 >gi|90424870|ref|YP_533240.1| methyl-accepting chemotaxis sensory transducer [Rhodopseudomonas palustris BisB18] gi|90106884|gb|ABD88921.1| methyl-accepting chemotaxis sensory transducer [Rhodopseudomonas palustris BisB18] Length = 567 Score = 39.2 bits (90), Expect = 1.8, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 45/119 (37%), Gaps = 1/119 (0%) Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISS 487 + + ++ ALV L+ + F+ + LH + DA K GGK ++ P I Sbjct: 188 EQTWTATQRSLIVAALVVLITLAVSIFMAGRITKPLHLMTDAMKALAGGKLDVAVPGIGR 247 Query: 488 AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546 + G M + + + +N Q + + + Q + + E +I+ Sbjct: 248 SDEVGEMA-EAVEVFKTNAVARQRLEAEQHELEARAAAQRKADTNKLADDFEGAVGEII 305 >gi|86132960|ref|ZP_01051550.1| two-component system sensor histidine kinase [Dokdonia donghaensis MED134] gi|85816478|gb|EAQ37666.1| two-component system sensor histidine kinase [Dokdonia donghaensis MED134] Length = 464 Score = 39.2 bits (90), Expect = 1.8, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 56/125 (44%), Gaps = 5/125 (4%) Query: 402 RGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461 RGD+I+I+S DF E + V +L R + ++ +++ + + + + + L Sbjct: 175 RGDSISISSYDF-EVRTTQEIQVPNWKSLVLKRMWVLIVGSIILFLFVIGLLYYSIKNLI 233 Query: 462 RLHNIDDAKKGEVGGKS-ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520 I + K + + L P + + T + N+ I SN D F+++ + R N Sbjct: 234 TQKKIAEVKTDFINNVTHELKTPLATLGIATKSLRNEAI---KSNPDSFNNTLGIVERQN 290 Query: 521 SYVSK 525 S + K Sbjct: 291 SRLQK 295 >gi|254499034|ref|ZP_05111729.1| conserved hypothetical protein [Legionella drancourtii LLAP12] gi|254351745|gb|EET10585.1| conserved hypothetical protein [Legionella drancourtii LLAP12] Length = 275 Score = 39.2 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 16/88 (18%) Query: 17 LGRTRI-LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 + + RI LIL +LV + L+ + + P LY +++ DV N+ FR Sbjct: 1 MPKKRITLILGISVLVILALYYTVTKWYSPPQRLTLYGNVDIRDV----------NLSFR 50 Query: 76 ISDNGSSISVPS-SMVGK----ARIHLA 98 +S S ++V V + ARI A Sbjct: 51 VSGRLSELTVDEGDDVHQGQLIARIDSA 78 >gi|330953275|gb|EGH53535.1| type III secretion component [Pseudomonas syringae Cit 7] Length = 128 Score = 39.2 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 3/58 (5%) Query: 155 HIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVL 210 H+V+PD +++ + +ASV++R +P + I+ LVA + L V+V Sbjct: 2 HVVLPDNDLLKRVISPSSASVLVR-YDPRTDINVLIPQIKTLVANGISGLGYDGVSVT 58 >gi|146292927|ref|YP_001183351.1| phenylalanyl-tRNA synthetase subunit beta [Shewanella putrefaciens CN-32] gi|145564617|gb|ABP75552.1| phenylalanyl-tRNA synthetase beta subunit [Shewanella putrefaciens CN-32] Length = 795 Score = 38.9 bits (89), Expect = 2.1, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 76/190 (40%), Gaps = 15/190 (7%) Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424 R +D + D L + ++ A G + F++ +L N Sbjct: 475 PNTAPVAALRMSDHKESDLSLKRVRALLV-ARGFQEA-------VTYSFVDPKLQNLVHP 526 Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG-----EVGGKSI 479 M +L ++ ++A+ + T L+ +G + R+ + + G ++ +S Sbjct: 527 GEQAM-VLPNPISSEMSAMRLSMFTGLLAAVGYNQSRQQSRVRLFETGLRFVPDINAESG 585 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS-DLRLLHMIEIN 538 + + + V TGL +++ A++S D F +L++ I VS R+ ++ Sbjct: 586 VRQQAMLACVITGLQNDEHWAMESKTVDFFDLKGDLEAIIGLTVSASEFSFRVATHSALH 645 Query: 539 EERFAKILRK 548 + A+ILR Sbjct: 646 PGQCAEILRN 655 >gi|120598988|ref|YP_963562.1| phenylalanyl-tRNA synthetase subunit beta [Shewanella sp. W3-18-1] gi|120559081|gb|ABM25008.1| phenylalanyl-tRNA synthetase beta subunit [Shewanella sp. W3-18-1] Length = 795 Score = 38.9 bits (89), Expect = 2.2, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 76/190 (40%), Gaps = 15/190 (7%) Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424 R +D + D L + ++ A G + F++ +L N Sbjct: 475 PNTAPVAALRMSDHKESDLSLKRVRALLV-ARGFQEA-------VTYSFVDPKLQNLVHP 526 Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG-----EVGGKSI 479 M +L ++ ++A+ + T L+ +G + R+ + + G ++ +S Sbjct: 527 GEQAM-VLPNPISSEMSAMRLSMFTGLLAAVGYNQSRQQSRVRLFETGLRFVPDINAESG 585 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS-DLRLLHMIEIN 538 + + + V TGL +++ A++S D F +L++ I VS R+ ++ Sbjct: 586 VRQQAMLACVITGLQNDEHWAMESKTVDFFDLKGDLEAIIGLTVSASEFSFRVATHSALH 645 Query: 539 EERFAKILRK 548 + A+ILR Sbjct: 646 PGQCAEILRN 655 >gi|319426544|gb|ADV54618.1| phenylalanyl-tRNA synthetase, beta subunit [Shewanella putrefaciens 200] Length = 795 Score = 38.9 bits (89), Expect = 2.2, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 76/190 (40%), Gaps = 15/190 (7%) Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424 R +D + D L + ++ A G + F++ +L N Sbjct: 475 PNTAPVAALRMSDHKESDLSLKRVRALLV-ARGFQEA-------VTYSFVDPKLQNLVHP 526 Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG-----EVGGKSI 479 M +L ++ ++A+ + T L+ +G + R+ + + G ++ +S Sbjct: 527 GEQAM-VLPNPISSEMSAMRLSMFTGLLAAVGYNQSRQQSRVRLFETGLRFVPDINAESG 585 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS-DLRLLHMIEIN 538 + + + V TGL +++ A++S D F +L++ I VS R+ ++ Sbjct: 586 VRQQAMLACVITGLQNDEHWAMESKTVDFFDLKGDLEAIIGLTVSASEFSFRVATHSALH 645 Query: 539 EERFAKILRK 548 + A+ILR Sbjct: 646 PGQCAEILRN 655 >gi|167589966|ref|ZP_02382354.1| flagellar MS-ring protein [Burkholderia ubonensis Bu] Length = 86 Score = 38.9 bits (89), Expect = 2.3, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 10/94 (10%) Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519 LRR H D ++ G+ P P + V GL + A + + N + R Sbjct: 2 LRRRHRHD-----QLHGRDRRGPAPEDAVVLDGLPAPEKAAANEDADALLLGFENEKHRY 56 Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + + + + A +++ W E Sbjct: 57 ERNLDYA-----RTIARQDPKIVATVVKSWVNDE 85 >gi|332095487|gb|EGJ00503.1| flagellar M-ring protein domain protein [Shigella dysenteriae 155-74] Length = 70 Score = 38.9 bits (89), Expect = 2.4, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 2/65 (3%) Query: 493 LMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL--RLLHMIEINEERFAKILRKWA 550 ++ + + S LQ R + + R+ M + + A ++R+W Sbjct: 6 QQAQAREEVEDAVEVRLSKDEQLQQRRANQRLGTEVMSQRIREMSDNDPRVVALVIRQWI 65 Query: 551 RSEIE 555 ++ E Sbjct: 66 NNDHE 70 >gi|326778076|ref|ZP_08237341.1| copper resistance protein CopC [Streptomyces cf. griseus XylebKG-1] gi|326658409|gb|EGE43255.1| copper resistance protein CopC [Streptomyces cf. griseus XylebKG-1] Length = 648 Score = 38.9 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 59/187 (31%), Gaps = 18/187 (9%) Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 SIA+ V+ L V + L I SAA RR T+ S+ L Sbjct: 317 SIAMPVDVAHLLAVAAWLGGLASLLVALYRTPDIGSAAV----RRFSTVAFASVVVLAAT 372 Query: 418 LFNSGTVQVSFMDILS--RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 QV L+ R+ +I + + L V + RL + + E Sbjct: 373 GIYQSWRQVGSWSALTGTRYGQLLIIKVALIAVLLAVAWFSRRWTARLTDTAASSDAEGA 432 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 P ++ A D ++ D+ +R + ++ R+ Sbjct: 433 TAEDAPTGPEETSPA---------ASDETSDDVAPERAAQLARQRAVLTATKKKRIR--- 480 Query: 536 EINEERF 542 + + ER Sbjct: 481 DADPERS 487 >gi|182437420|ref|YP_001825139.1| putative integral membrane protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|178465936|dbj|BAG20456.1| putative integral membrane protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 648 Score = 38.9 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 59/187 (31%), Gaps = 18/187 (9%) Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 SIA+ V+ L V + L I SAA RR T+ S+ L Sbjct: 317 SIAMPVDVAHLLAVAAWLGGLASLLVALYRTPDIGSAAV----RRFSTVAFASVVVLAAT 372 Query: 418 LFNSGTVQVSFMDILS--RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 QV L+ R+ +I + + L V + RL + + E Sbjct: 373 GIYQSWRQVGSWSALTGTRYGQLLIIKVALIAVLLAVAWFSRRWTARLTDTAASSDAEGA 432 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 P ++ A D ++ D+ +R + ++ R+ Sbjct: 433 TAEDAPTGPEETSPA---------ASDETSDDVAPERAAQLARQRAVLTATKKKRIR--- 480 Query: 536 EINEERF 542 + + ER Sbjct: 481 DADPERS 487 >gi|318061179|ref|ZP_07979900.1| 2-isopropylmalate synthase [Streptomyces sp. SA3_actG] gi|318078980|ref|ZP_07986312.1| 2-isopropylmalate synthase [Streptomyces sp. SA3_actF] Length = 601 Score = 38.5 bits (88), Expect = 2.9, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 9/76 (11%) Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-SAEAI 191 +A E I RT++S+ G A VH+ FR+ V+ R + K + E Sbjct: 138 QAREELIERTVESLVGARRANVHLYNATAPVFRE--------VVFRGSKEDIKKIAVEGT 189 Query: 192 RHLVAAAVPNLDMGDV 207 RH+VA A L V Sbjct: 190 RHVVAYAEKLLGPETV 205 >gi|302518979|ref|ZP_07271321.1| 2-isopropylmalate synthase [Streptomyces sp. SPB78] gi|302427874|gb|EFK99689.1| 2-isopropylmalate synthase [Streptomyces sp. SPB78] Length = 601 Score = 38.5 bits (88), Expect = 2.9, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 9/76 (11%) Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-SAEAI 191 +A E I RT++S+ G A VH+ FR+ V+ R + K + E Sbjct: 138 QAREELIERTVESLVGARRANVHLYNATAPVFRE--------VVFRGSKEDIKKIAVEGT 189 Query: 192 RHLVAAAVPNLDMGDV 207 RH+VA A L V Sbjct: 190 RHVVAYAEKLLGPETV 205 >gi|90422764|ref|YP_531134.1| methyl-accepting chemotaxis sensory transducer [Rhodopseudomonas palustris BisB18] gi|90104778|gb|ABD86815.1| methyl-accepting chemotaxis sensory transducer [Rhodopseudomonas palustris BisB18] Length = 567 Score = 38.5 bits (88), Expect = 2.9, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 43/116 (37%), Gaps = 1/116 (0%) Query: 431 ILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVT 490 S + + ++ L+ + F+ + LH + DA K GG+ ++ P + Sbjct: 191 WASTQRSLIAATVILLITLAVSVFMAGRITKPLHRMTDAMKALAGGRLDVAIPGVGRNDE 250 Query: 491 TGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546 G M + +A+ +N Q + + + Q + + E +I+ Sbjct: 251 IGEMA-EAVAVFKTNAVERQRLEAEQKELEARAAAQRKADTSRLADDFETAVGEII 305 >gi|255024647|ref|ZP_05296633.1| flagellar MS-ring protein [Listeria monocytogenes FSL J1-208] Length = 109 Score = 38.5 bits (88), Expect = 2.9, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 34/96 (35%), Gaps = 13/96 (13%) Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519 L+R +++A + E P + + P+ N D+ D+ + Sbjct: 27 LKRKEQLEEALEPEEKD----YIPAEEAIINPEEHPDFNFQTDAF--DLSEPEIKAR--- 77 Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + +L M + + R A +++KW E Sbjct: 78 ----KESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 109 >gi|254854546|ref|ZP_05243894.1| predicted protein [Listeria monocytogenes FSL R2-503] gi|258607946|gb|EEW20554.1| predicted protein [Listeria monocytogenes FSL R2-503] Length = 124 Score = 38.5 bits (88), Expect = 3.0, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 13/96 (13%) Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519 L+R +++A + E P + + P+ N D+ + L++R Sbjct: 42 LKRKEQLEEALEPEEKD----YIPAEEAIINPEEHPDFNFQTDAFD----LSEPELKAR- 92 Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + +L M + + R A +++KW E Sbjct: 93 ----KESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 124 >gi|333027193|ref|ZP_08455257.1| putative 2-isopropylmalate synthase [Streptomyces sp. Tu6071] gi|332747045|gb|EGJ77486.1| putative 2-isopropylmalate synthase [Streptomyces sp. Tu6071] Length = 601 Score = 38.5 bits (88), Expect = 3.2, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 9/76 (11%) Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-SAEAI 191 +A E I RT++S+ G A VH+ FR+ V+ R + K + E Sbjct: 138 QAREELIERTVESLVGARRANVHLYNATAPVFRE--------VVFRGSKDDIKKIAVEGT 189 Query: 192 RHLVAAAVPNLDMGDV 207 RH+VA A L V Sbjct: 190 RHVVAYAEKLLGPETV 205 >gi|325679546|ref|ZP_08159126.1| conserved domain protein [Ruminococcus albus 8] gi|324108833|gb|EGC03069.1| conserved domain protein [Ruminococcus albus 8] Length = 240 Score = 38.5 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 42/119 (35%), Gaps = 12/119 (10%) Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISS 487 + + ++ + T + + + LL FL DAK+ E + + P Sbjct: 92 WGEGIASNIGTGWSVGITIAAVLLALFL-------FSGGTDAKEPETPQRGAVKQPSTLG 144 Query: 488 AVTTGLMP---NDNIALDSSNQDIFSHSRNLQ--SRINSYVSKQSDLRLLHMIEINEER 541 + +D + ++ ++ S+ + ++I + R M E +E R Sbjct: 145 LLGRAAFATFLDDAFSPPDTSINMSSYEPHYDNSAQIRQQQLDAENARKKQMAEEDERR 203 >gi|24639970|ref|NP_572262.1| CG3108 [Drosophila melanogaster] gi|22831771|gb|AAF46083.2| CG3108 [Drosophila melanogaster] gi|54650714|gb|AAV36936.1| LP17541p [Drosophila melanogaster] Length = 1132 Score = 38.5 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 31/217 (14%), Positives = 72/217 (33%), Gaps = 20/217 (9%) Query: 197 AAVPNLDMGDVTVLD--------------STGKLLTANEMERNILGKSLSIVQAIQHEIE 242 +AV L+ +D G+ + ++ E+ + ++ + E Sbjct: 209 SAVEELEKESEAAMDDQVPEESEIQPEQVQPGEYQSESDGEQAETKPEIEAQPEVEAQPE 268 Query: 243 MNINKALAAFLGVD-NFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 L V+ E+ + + +P S+VE ++ ++ Sbjct: 269 AEAQPEAEPQLEVEPQPEVESQPEVESQPEVEAQPEVEPQSEVESQPEAESHSEPETQAE 328 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA--TTHDNYKLERLSI 359 E+ VE S + E + E+ S+ E++T + T + L+ Sbjct: 329 VEAQPEVESLPEAESQPEAESQPEREPEVEAEKISDNEVDTTEASLMETLVEGIEDGLTA 388 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT 396 A+ + E L ++D+ + + + V+ A Sbjct: 389 AM---DNLVPEELAEASDKQETELESEDQQSPVTEAI 422 >gi|227834014|ref|YP_002835721.1| two-component system sensor kinase [Corynebacterium aurimucosum ATCC 700975] gi|262183499|ref|ZP_06042920.1| two-component system sensor kinase [Corynebacterium aurimucosum ATCC 700975] gi|227455030|gb|ACP33783.1| two-component system sensor kinase [Corynebacterium aurimucosum ATCC 700975] Length = 483 Score = 38.5 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 33/90 (36%) Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498 +I ALV L+ L+ +L ALR L ++ G P G + Sbjct: 182 IIAALVMLIIALVGMWLIHRALRPLRVVEKTASQIAAGNLDKRVPEWPPHTEVGQLAAAL 241 Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 + Q+ H++ + ++ +V S Sbjct: 242 NVMLGRLQNSVVHAQEKEQQMRRFVGDASH 271 >gi|116181216|ref|XP_001220457.1| predicted protein [Chaetomium globosum CBS 148.51] gi|88185533|gb|EAQ93001.1| predicted protein [Chaetomium globosum CBS 148.51] Length = 361 Score = 38.1 bits (87), Expect = 3.7, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 44/143 (30%), Gaps = 12/143 (8%) Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDM-G 205 G VH + + + ++ + + A L NL Sbjct: 214 DGKQQQTVHAA--HEPLWVRDPRTKSEGYVLIPLEAGGPGTYNATLSL-----SNLARLE 266 Query: 206 DVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE 265 DV+++D +G L+ E N G S S Q ++ + ++V Sbjct: 267 DVSIVDGSGGLVW----ESNAAGSSSSSFTNGQRSLQYKVQDDTQDLFVAAKAATSVSVS 322 Query: 266 LNMDTQQIREIVYDPDSKVERSI 288 + + PDS RS+ Sbjct: 323 AVFTATNVAQATTVPDSAASRSM 345 >gi|157692371|ref|YP_001486833.1| resistance-nodulation-cell division acriflavin:proton (H+) antiporter [Bacillus pumilus SAFR-032] gi|157681129|gb|ABV62273.1| RND superfamily resistance-nodulation-cell division:proton (H+) antiporter [Bacillus pumilus SAFR-032] Length = 1039 Score = 38.1 bits (87), Expect = 3.8, Method: Composition-based stats. Identities = 33/223 (14%), Positives = 86/223 (38%), Gaps = 24/223 (10%) Query: 139 IARTIQSISG---IVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLV 195 ++R I+ G + +A + + K A+ +N + KS E ++ + Sbjct: 439 LSRAIEQTDGVSKVRSATRPVGKGLSDLYVKSQAK--------ELNTGLDKSNEGLKKIQ 490 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255 A L ++ D T ++ ++ + ++ + S+ IQ+ IE ++ + + Sbjct: 491 DA----LTTMSQSIEDQTPQIKSSGKGINKLISGTESVKTGIQN-IEKSLRELQSGIDQN 545 Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD-------AQRSETSQPESAVTV 308 N + + ++ +++ V + +V +SK+ S ++ + + Sbjct: 546 KNGVAQIKEKIKGAKKELTAQVAQVNQQVSLYKSISKELKAALAKVDTSSSAAADVKALI 605 Query: 309 EQNMPHVSDRKVPLPRSLENTDKKEEQSNY-EINTKSIATTHD 350 Q S + +P+ EN + +++Y E++T Sbjct: 606 TQANQQFSTLEKQIPQVKENQSYQAIKASYNELSTTLQEGAKQ 648 >gi|59713368|ref|YP_206143.1| hypothetical protein VF_A0185 [Vibrio fischeri ES114] gi|59481616|gb|AAW87255.1| hypothetical protein VF_A0185 [Vibrio fischeri ES114] Length = 579 Score = 38.1 bits (87), Expect = 3.8, Method: Composition-based stats. Identities = 28/223 (12%), Positives = 67/223 (30%), Gaps = 30/223 (13%) Query: 222 MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD 281 + ++ +S ++ + +I + N L++ + IRE V Sbjct: 27 AQTSLQLDQMSFTAELEQRLNSDIERI-----AGKNIHV-----LSIQAEFIREEVDAST 76 Query: 282 SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEIN 341 SK + + + PE + + + S E +++ N +++ Sbjct: 77 SKPIVAKQKPEVKNVIMDDAPELPGLAGMSAFNKNTAAKVSTVSEEVEQQEDALDNEQVS 136 Query: 342 TKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR 401 + LS ++++ + I ++ N Sbjct: 137 KTEK-------MIRSLSTTLLLDNSVDKDTELL-------------IRNLLLEKLEYNPM 176 Query: 402 RGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALV 444 RGD + I MD ++ + ++ VI L+ Sbjct: 177 RGDRLEIIRMDMAPVSEITGSSIAHYWWVLVLLLLLLVIGYLL 219 >gi|218458071|ref|ZP_03498162.1| D-amino acid dehydrogenase small subunit [Rhizobium etli Kim 5] Length = 273 Score = 38.1 bits (87), Expect = 3.9, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 48/132 (36%), Gaps = 12/132 (9%) Query: 51 LYVKLEVSDVNRI-SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNS 109 L+ + D + AL+ I + + D I V ++ R + GL + + Sbjct: 140 LFRTQQQLDASAKDVKALAADGIPYEVLDRDGCIRVEPALRH-VRDKIVG-GLLTPKDET 197 Query: 110 GYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA 169 G + F N+ + + TI+++ + A RV V+ + Sbjct: 198 G-DCFKFTNALAAKAEALGVRFAYGT------TIKALD-VEAGRVRGVVTARDP-DRERE 248 Query: 170 RPTASVMIRAIN 181 R +A ++ A+ Sbjct: 249 RMSADAVVVALG 260 >gi|321474561|gb|EFX85526.1| hypothetical protein DAPPUDRAFT_314091 [Daphnia pulex] Length = 1042 Score = 38.1 bits (87), Expect = 4.1, Method: Composition-based stats. Identities = 31/215 (14%), Positives = 67/215 (31%), Gaps = 29/215 (13%) Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVT-VLD 211 R H + P +V++R +P + + + ++++ + V VL Sbjct: 23 RPHCQFRHEHLPVRA---PKPTVVLRTHDPGPSQGIQEGEN--SSSIEQIVSEAVKRVLK 77 Query: 212 STGKLLTANEMER--NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 G+LL + + ++G Q ++ + + LA + + Sbjct: 78 ENGQLLENFDASKIMELVG---------QQKLVEKVVEHLAPPVSPKKVEGNPRESSHKS 128 Query: 270 TQQIREIV------YDPDSKVE--RSIRLSKDAQRSETSQPESAVTV---EQNMPHVSDR 318 + Y P + I + E ++P S + Sbjct: 129 KSHKSYNIPVGTPAYTPTPIAVLKKGITTPSKVENYEPTKPSSGRVATYKPSSKVAAKSE 188 Query: 319 KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 + P +LE+T NY + S ++ YK Sbjct: 189 ETYTPSTLESTSVPSRVDNY-VPRNSSTSSTATYK 222 >gi|194014791|ref|ZP_03053408.1| RND superfamily resistance-nodulation-cell division:proton [Bacillus pumilus ATCC 7061] gi|194013817|gb|EDW23382.1| RND superfamily resistance-nodulation-cell division:proton [Bacillus pumilus ATCC 7061] Length = 1039 Score = 38.1 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 33/223 (14%), Positives = 84/223 (37%), Gaps = 24/223 (10%) Query: 139 IARTIQSISG---IVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLV 195 ++R I+ G + +A + + K A+ +N + KS E ++ + Sbjct: 439 LSRAIEQTDGVSKVRSATRPVGKGLSDLYVKSQAK--------ELNTGLDKSNEGLKKIQ 490 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255 A L ++ D T ++ ++ + ++ + S+ IQ+ IE ++ Sbjct: 491 DA----LTTMSQSIEDQTPQIKSSGKGINKLISGTESVKTGIQN-IEKSLRDLQGGIDQN 545 Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD-------AQRSETSQPESAVTV 308 N + + ++ +++ V + +V +SK+ S ++ + + Sbjct: 546 KNGVAQIKEKIKGAKKELTTQVAQVNQQVSLYKSISKELKAALAQVDTSSSAAADVKALI 605 Query: 309 EQNMPHVSDRKVPLPRSLENTDKKEEQSNY-EINTKSIATTHD 350 Q S + +P+ EN + +++Y E++T Sbjct: 606 TQANKQFSTLEKQIPQVKENQSYQAIKASYNELSTTLQEGAKQ 648 >gi|326203777|ref|ZP_08193640.1| NLPA lipoprotein [Clostridium papyrosolvens DSM 2782] gi|325986217|gb|EGD47050.1| NLPA lipoprotein [Clostridium papyrosolvens DSM 2782] Length = 269 Score = 38.1 bits (87), Expect = 4.3, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 41/95 (43%), Gaps = 11/95 (11%) Query: 78 DNGSSISVPSSMVGKAR--IHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135 +G++I+VP+ +AR + L GL + +G++ K +T + I ++ L Sbjct: 124 ADGATIAVPNDTTNEARALLLLETAGLIKVNPTAGFKATVKD----ITQNPKNIK-IKEL 178 Query: 136 E-GEIARTIQSISGIVAARVHIVMPDMGSFRKIGA 169 E ++ART + + A ++ F Sbjct: 179 EAAQLART---LPDVDVAVINGNFALQAGFNVEKD 210 >gi|134096875|ref|YP_001102536.1| oligopeptide ABC transporter ATP-binding protein [Saccharopolyspora erythraea NRRL 2338] gi|291006682|ref|ZP_06564655.1| oligopeptide ABC transporter ATP-binding protein [Saccharopolyspora erythraea NRRL 2338] gi|133909498|emb|CAL99610.1| oligopeptide ABC transporter ATP-binding protein [Saccharopolyspora erythraea NRRL 2338] Length = 330 Score = 38.1 bits (87), Expect = 4.4, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 4/112 (3%) Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGL--PSSSSNSGYELFDKVNSFGLTSFMQ 127 I F + + V S GK+ LA GL P + SG FD GL+ Sbjct: 25 DGISFDVEPGRTVGLVGESGCGKSVTSLAIMGLLPPRGAEVSGSITFDGTELLGLSRQEL 84 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIV--MPDMGSFRKIGARPTASVMI 177 + R R L + S++ +V+ V + + + A P A ++ Sbjct: 85 DKRRGRDLSMVFQDPLTSLNPVVSIGVQVAEVIERHRGLPRKKAMPEAEELL 136 >gi|118365979|ref|XP_001016208.1| hypothetical protein TTHERM_00125290 [Tetrahymena thermophila] gi|89297975|gb|EAR95963.1| hypothetical protein TTHERM_00125290 [Tetrahymena thermophila SB210] Length = 2228 Score = 38.1 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 39/293 (13%), Positives = 100/293 (34%), Gaps = 44/293 (15%) Query: 81 SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140 S++ +P + ++ + + + ++ G K ++F+ +R LE + Sbjct: 82 SNVMLPFDDNNQNMLNNSQNNINTQTNIMGNNNQKKELVVPSSTFLHNKNTIRYLEDSLT 141 Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVP 200 I+ + I ++ + +F++ + I S ++ + Sbjct: 142 YLIKQL--ISQEIMNHFLYCQSTFQQQRQ-----SSMNMIGGGNRNSNNTSQNNI----- 189 Query: 201 NLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRS 260 + + T++ L+T N + + + ++ + LA + + Sbjct: 190 -IVTQNNTLITQNNTLVTQNNLITGNNKTQATNNKNVKAQ--------LAPI-SSERGQI 239 Query: 261 AVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE------------------TSQP 302 + D ++ E++ + +KV + ++ ++ S + P Sbjct: 240 ETSSG-KFDINRLEEMISNNQTKVTQPNAITNNSNVSNKRQQQSNLFQKKQQRGQKQNNP 298 Query: 303 ESAVTVEQNMPHVSDRK--VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 + V+ N + + P++ NTD Q N N+K I T DN Sbjct: 299 SGLMQVKGNNSQAVNNNQTINDPKTKMNTDNMTSQ-NLLYNSKEIQETIDNGS 350 >gi|208434825|ref|YP_002266491.1| vacuolating cytotoxin (VacA)-like protein [Helicobacter pylori G27] gi|208432754|gb|ACI27625.1| vacuolating cytotoxin (VacA)-like protein [Helicobacter pylori G27] Length = 2506 Score = 38.1 bits (87), Expect = 4.6, Method: Composition-based stats. Identities = 28/237 (11%), Positives = 76/237 (32%), Gaps = 22/237 (9%) Query: 174 SVMIRAINPSVYKSAEAIRH--LVAA--AVPNLDMGDVTVLDSTGKLLTAN----EMERN 225 S++ + + + + A+ L + A+ N+ + + T + N + + Sbjct: 413 SIITQFLGDDLQQQAQKTYQEDLTHSQNALNNVTSDNTIANNDTSYTQSKNATIAKDAQG 472 Query: 226 ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVE 285 + + I Q + +E ++ + S +Q E + K Sbjct: 473 LENTNQKIAQD-EQALEKDLAQI-KQLANSTTGFSEQAFTQAQKQEQQDEQTLQNEEKTF 530 Query: 286 RSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSI 345 S + + + +Q +L N + +N + + Sbjct: 531 NSEQEGLKQAIQQAQAQQQKQEQQQAQQTYQQDLSNSQSALNNAASDSKIANSDTDYT-- 588 Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSA-DQGKIDSYLAEINKIVSAATGINSR 401 + + A+ + L + A D+ ++ LA+I ++ ++ TG + + Sbjct: 589 ---------KNKNTAIATDAQNLENTNQQIAQDEQALEKDLAQIKQLANSTTGFSEQ 636 >gi|120556077|ref|YP_960428.1| peptidase M23B [Marinobacter aquaeolei VT8] gi|120325926|gb|ABM20241.1| peptidase M23B [Marinobacter aquaeolei VT8] Length = 366 Score = 37.7 bits (86), Expect = 4.6, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 71/186 (38%), Gaps = 18/186 (9%) Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 + + +RA E E+A T++ R ++ + ++ + A V++ I P Sbjct: 68 EQQERLAELRAQESELANTLEQQ------RENLKLQIRAAWMEGDAPALK-VLLNEIEPG 120 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEM 243 A + + L V+ L++ + L + R + + + + + ++E Sbjct: 121 EV--ARTLTYY-----EYLSKNTVSRLEAFQRSLQELKAARAAVQATRTELAKTEADLEQ 173 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 + + R+ +A LN D Q R ++ +R +L K+ Q++ S P Sbjct: 174 RQQQLTQS----KQDRTRTLAALNDDIQNRRSERQSLEADRQRLEQLLKEVQQAIASIPA 229 Query: 304 SAVTVE 309 + Sbjct: 230 PNESSP 235 >gi|300780835|ref|ZP_07090689.1| cell division protein FtsZ [Corynebacterium genitalium ATCC 33030] gi|300532542|gb|EFK53603.1| cell division protein FtsZ [Corynebacterium genitalium ATCC 33030] Length = 429 Score = 37.7 bits (86), Expect = 5.1, Method: Composition-based stats. Identities = 42/236 (17%), Positives = 83/236 (35%), Gaps = 29/236 (12%) Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 SF + +ALEG I+++ + IV+P+ + A + RA + Sbjct: 134 SFEGKRRTRQALEG-----IEALKEV--CDTVIVIPNDRLLQLGDAELSMMEAFRAADEV 186 Query: 184 VYKSAEAIRHLVAAAVPNL---DMGDV-TVLDSTGKLLTANEMERNILGKSLSIVQAI-- 237 +Y + I +L+ +P + D DV +V+ G L R + QAI Sbjct: 187 LYNGVQGITNLIT--IPGMINVDFADVRSVMADAGSALMGVGSARGENRVMAATEQAINS 244 Query: 238 ---QHEIEMNINKALA-------AFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS 287 + +E ++ + V+N S V + + D I + D + E Sbjct: 245 PLLETTMEGAKGVLISVAGGSDLGLMEVNNAASIVEEKADDDANIIFGTIIDDNLGDEVR 304 Query: 288 IRLSKDAQRSETSQPESAVTVEQNM----PHVSDRKVPLPRSLENTDKKEEQSNYE 339 + + + + + + + P P S + +EE +Y+ Sbjct: 305 VTIIATGFDEKANARPDRTGAPEQVVVEAEPAQETPTPAPSSSSLFEPREETRDYD 360 >gi|18766202|gb|AAL78898.1|AF435854_1 merozoite surface protein-9 precursor [Plasmodium cynomolgi] Length = 818 Score = 37.7 bits (86), Expect = 5.1, Method: Composition-based stats. Identities = 26/182 (14%), Positives = 63/182 (34%), Gaps = 2/182 (1%) Query: 199 VPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNF 258 V ++ V + D ++ + + + V ++E + K + V Sbjct: 537 VEHMAHDMVNMEDVVEDVVEEVAQMEEVAAEVATEVAEEVAQMEEIVQKVVNEAAYVVQE 596 Query: 259 RSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDR 318 + V E+ + V P++ E + + E V +N+ ++ Sbjct: 597 VANAVEEVADAVDDTAQGVDTPENVFEVGTEEVEAVPENAEVGTEEVEAVPENVEVGTEE 656 Query: 319 KVPLPRSLENTDKKEEQS--NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA 376 + +P + E ++EE N E+ T+ +N ++ + VV ++ A Sbjct: 657 EEAVPENAEVGTEEEEAVPENAEVGTEEEEAVPENGEVAPENTEVVPENAKVVPENAEVA 716 Query: 377 DQ 378 + Sbjct: 717 PE 718 >gi|50555427|ref|XP_505122.1| YALI0F07513p [Yarrowia lipolytica] gi|49650992|emb|CAG77929.1| YALI0F07513p [Yarrowia lipolytica] Length = 1184 Score = 37.7 bits (86), Expect = 5.2, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 79/237 (33%), Gaps = 29/237 (12%) Query: 53 VKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA-----QGLPSSSS 107 ++ +V R+ L + + V AR+ LA Q L S Sbjct: 691 GGVDEKEVERVKGELE--KVRHELEVATEQAGVAKKDADTARMELAGVKRERQDLQRESD 748 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 +L + G + E +V + T++S+ + + M + Sbjct: 749 TLREDLETRNVELGTRNVELETKKVEV--SSLTATVESLKA-EVSSLQASMNQI------ 799 Query: 168 GARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTG-KLLTANEMERNI 226 A+VM+ + + A I LV + V + + +A+E+E+ + Sbjct: 800 -----ATVMV---DHDIDVEAMTIPQLVLELLNERQALHVRISEQESISRSSASELEQKL 851 Query: 227 LGKSLSIV--QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD 281 +L + + ++E ++ AL+ + N + V+ E + D Sbjct: 852 TETTLQLQLREQFTDDLEAQLDDALSRIEHMGNHEARVMEL--TRQLTQFEEQFSND 906 >gi|288921547|ref|ZP_06415821.1| histidine kinase [Frankia sp. EUN1f] gi|288347064|gb|EFC81367.1| histidine kinase [Frankia sp. EUN1f] Length = 414 Score = 37.7 bits (86), Expect = 5.6, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 53/141 (37%), Gaps = 10/141 (7%) Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 ++ + L + V +M + R V+ L+ + V +L L R + A Sbjct: 136 ALAVIPPGLLAAPITYVVWMIVDPRWLWFVL--LLLSGPAVYVWWLVTPPLVRARAV--A 191 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK--QS 527 ++ +GG + VT+ ALD S +I R+L + ++ S Sbjct: 192 ERAILGGSRVAELQRRVERVTSSRSS----ALDHSAAEIRRIERDLHDGAQARIAAVGMS 247 Query: 528 DLRLLHMIEINEERFAKILRK 548 ++E + ++LR+ Sbjct: 248 VGLAEKLVEQDPAAAVELLRE 268 >gi|62484220|ref|NP_608435.2| uncoordinated [Drosophila melanogaster] gi|53680463|gb|AAU89434.1| uncoordinated [Drosophila melanogaster] gi|61677918|gb|AAF50849.3| uncoordinated [Drosophila melanogaster] Length = 1386 Score = 37.7 bits (86), Expect = 5.6, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 32/110 (29%), Gaps = 7/110 (6%) Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL 515 G A RR+ + + G+ P + VT G + + Sbjct: 71 GDPARRRMTQSRERLQATGLGRPGPCGPSNITRVTRGSSLPPEVGAHGYRTGRPTRKHVP 130 Query: 516 QSRINSYVSKQSDLR-------LLHMIEINEERFAKILRKWARSEIEDRY 558 + SD R L + ++E+ F R+W E R Sbjct: 131 IPQDQIEEQDDSDARAERLRQQLEELAAMSEQEFEVKFRQWLDQEGIARE 180 >gi|302692326|ref|XP_003035842.1| hypothetical protein SCHCODRAFT_51554 [Schizophyllum commune H4-8] gi|300109538|gb|EFJ00940.1| hypothetical protein SCHCODRAFT_51554 [Schizophyllum commune H4-8] Length = 147 Score = 37.3 bits (85), Expect = 6.0, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 4/87 (4%) Query: 165 RKIGARPTASVMIRAINPSVYKSAEAIRHLVAAA--VPNLDMGDVTVLDSTGKLLTANEM 222 ++ T+S +++A+ P + +A ++LV A +P L DV V G L + E Sbjct: 24 QRRRGEGTSSDVVQALKPRMDLHEDAEKNLVTATFELPGLKKEDVQVNLQNGLLTVSGET 83 Query: 223 ERNILGKSLSIVQAIQHEIEMNINKAL 249 + + + I++ L Sbjct: 84 KSESDKEEQGYAVR-ERRY-GKISRTL 108 >gi|329946360|ref|ZP_08293927.1| UvrD/REP helicase [Actinomyces sp. oral taxon 170 str. F0386] gi|328527336|gb|EGF54334.1| UvrD/REP helicase [Actinomyces sp. oral taxon 170 str. F0386] Length = 1146 Score = 37.3 bits (85), Expect = 6.2, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 9/91 (9%) Query: 32 PIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVG 91 + F+A R + L + + I+ L A + + I G + VP V Sbjct: 426 TVAAFLAER-WSPGAEMAVL--CRTRTQMEPIAAELEAAGLPYTIVGLGGMLYVPE--VA 480 Query: 92 KARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 R L A S G + + FG+ Sbjct: 481 DVRALLTAA----SDPERGDRVVRLLTGFGI 507 >gi|269975940|ref|ZP_06182944.1| integral membrane sensor signal transduction histidine kinase [Mobiluncus mulieris 28-1] gi|306817268|ref|ZP_07451014.1| phosphate regulon sensor histidine kinase protein PhoR [Mobiluncus mulieris ATCC 35239] gi|269935768|gb|EEZ92298.1| integral membrane sensor signal transduction histidine kinase [Mobiluncus mulieris 28-1] gi|304649948|gb|EFM47227.1| phosphate regulon sensor histidine kinase protein PhoR [Mobiluncus mulieris ATCC 35239] Length = 521 Score = 37.3 bits (85), Expect = 6.2, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 12/121 (9%) Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497 + ++ +VGT L L A R LH I+ G PP + G + N Sbjct: 165 MISTLIIAMVGTFLSNILVGRAFRPLHQIESVANKIAAGDLSKRIPPAPTTTEVGSLSNS 224 Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDL------------RLLHMIEINEERFAKI 545 + S + FS + ++ +VS S L M + ER A++ Sbjct: 225 LNIMLSHLEQAFSAVELSERKMRRFVSDASHELRTPTAAIRGYAELYRMGGVEPERQAEV 284 Query: 546 L 546 + Sbjct: 285 M 285 >gi|227876376|ref|ZP_03994488.1| periplasmic sensor signal transduction histidine kinase [Mobiluncus mulieris ATCC 35243] gi|227842917|gb|EEJ53114.1| periplasmic sensor signal transduction histidine kinase [Mobiluncus mulieris ATCC 35243] Length = 515 Score = 37.3 bits (85), Expect = 6.4, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 12/121 (9%) Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497 + ++ +VGT L L A R LH I+ G PP + G + N Sbjct: 159 MISTLIIAMVGTFLSNILVGRAFRPLHQIESVANKIAAGDLSKRIPPAPTTTEVGSLSNS 218 Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDL------------RLLHMIEINEERFAKI 545 + S + FS + ++ +VS S L M + ER A++ Sbjct: 219 LNIMLSHLEQAFSAVELSERKMRRFVSDASHELRTPTAAIRGYAELYRMGGVEPERQAEV 278 Query: 546 L 546 + Sbjct: 279 M 279 >gi|9632606|ref|NP_049805.1| gp29 baseplate hub subunit, tail length determinator [Enterobacteria phage T4] gi|137988|sp|P13337|VG29_BPT4 RecName: Full=Tail-tube assembly protein Gp29; AltName: Full=Folylpolyglutamate synthase; AltName: Full=Tail length regulator; AltName: Full=Tetrahydrofolylpolyglutamate synthase gi|5354230|gb|AAD42437.1|AF158101_24 gp29 baseplate hub subunit, tail length determinator [Enterobacteria phage T4] gi|215946|gb|AAA32538.1| tail-tube assembly protein [Enterobacteria phage T4] Length = 590 Score = 37.3 bits (85), Expect = 6.4, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 60/197 (30%), Gaps = 15/197 (7%) Query: 167 IGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER 224 A +AS + +N K A+A L+A V + +D+ ++ Sbjct: 22 QEAAKSASNTLSGLNDISTKLDDAQAASELIAQTVEEKSNEIIGAIDNVESAVSDTSAGS 81 Query: 225 NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV 284 ++ +++ I I EI ++ L + + T P Sbjct: 82 ELIAETVEIGNNINKEIGESLGSKLDKLTSLLEQKIQTAGIQQTGTSLATVESAIP---- 137 Query: 285 ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKS 344 +++ +D A N P P P + +E+Q N K Sbjct: 138 ---VKVVEDDTAESVGPLLPAPEAVNNDPDADFFPTPQPVEPKQESPEEKQKKEAFNLKL 194 Query: 345 IATTHDNYKLERLSIAV 361 L++L+ V Sbjct: 195 SQ------ALDKLTKTV 205 >gi|221638303|ref|YP_002524565.1| mechanosensitive ion channel MscS [Rhodobacter sphaeroides KD131] gi|221159084|gb|ACM00064.1| MscS Mechanosensitive ion channel precursor [Rhodobacter sphaeroides KD131] Length = 787 Score = 37.3 bits (85), Expect = 6.5, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 38/109 (34%) Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISS 487 + SR ++AL+ ++G L V FL + + + + V + + + PP Sbjct: 285 VEESTSRAAGRGVSALISVIGVLFVAFLVVRNRKAVAEWLLRETQPVSARHVAAEPPAPP 344 Query: 488 AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536 VTT + D A ++ + + R ++ Sbjct: 345 VVTTQEIDPDLAADIAAGTADAPPPPEAEPVEVTPEPHPRVRRSPALVA 393 >gi|126461318|ref|YP_001042432.1| MscS mechanosensitive ion channel [Rhodobacter sphaeroides ATCC 17029] gi|126102982|gb|ABN75660.1| MscS Mechanosensitive ion channel [Rhodobacter sphaeroides ATCC 17029] Length = 787 Score = 37.3 bits (85), Expect = 6.5, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 38/109 (34%) Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISS 487 + SR ++AL+ ++G L V FL + + + + V + + + PP Sbjct: 285 VEESTSRAAGRGVSALISVIGVLFVAFLVVRNRKAVAEWLLRETQPVSARHVAAEPPAPP 344 Query: 488 AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536 VTT + D A ++ + + R ++ Sbjct: 345 VVTTQEIDPDLAADIAAGTADAPPPPEAEPVEVTPEPHPRVRRSPALVA 393 >gi|114568885|ref|YP_755565.1| hypothetical protein Mmar10_0334 [Maricaulis maris MCS10] gi|114339347|gb|ABI64627.1| integral membrane protein-like protein [Maricaulis maris MCS10] Length = 605 Score = 37.3 bits (85), Expect = 6.7, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 67/185 (36%), Gaps = 26/185 (14%) Query: 26 ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN----IDF-RISDNG 80 A + + I+ +A + P ++ +D I+ + N + F +S G Sbjct: 94 ALIGALVIVAVIAGSQMLTRPGQ----SEMPTADAGAIADDIPSDNSIAVLPFLDLSPAG 149 Query: 81 SSISVPSSMVGKARIHLAA-QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEI 139 + + L +GL +S S + + ++ G+ + + LEG + Sbjct: 150 DQQYFSDGISEEILNVLVRIEGLDVTSRTSAF--QYRSDTMGVPEIAERLRVRHVLEGSV 207 Query: 140 AR---TIQSISGIVAAR--VHI-------VMPDMGSFRKIGARPTASVMIRAINPSVYKS 187 R TI+ + ++ AR VH+ + F A ++RA++ + Sbjct: 208 RRSGNTIRITAQLIDARTDVHLWSQTYDQSLTAENLFAIQDEIANA--IVRALSEVLDIQ 265 Query: 188 AEAIR 192 A I Sbjct: 266 APEIA 270 >gi|39974047|ref|XP_368414.1| hypothetical protein MGG_00830 [Magnaporthe oryzae 70-15] gi|145018231|gb|EDK02510.1| hypothetical protein MGG_00830 [Magnaporthe oryzae 70-15] Length = 635 Score = 37.3 bits (85), Expect = 7.3, Method: Composition-based stats. Identities = 22/154 (14%), Positives = 53/154 (34%), Gaps = 36/154 (23%) Query: 280 PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVP----LPRSLENTDKKEE- 334 P+ + K+A +++ QP N+ + + P P ++ + Sbjct: 323 PEGDFLKKKDKGKEAAAAQSGQPGQPGAAPDNLAPGAAGQPPVVLDNPSGGKSGSNSRQP 382 Query: 335 ---------QSNY----------EINTKSIATTHDN----YKLERLSIAVVVNKGRLTEV 371 +Y +++ + D Y ++ +++A ++ KG + Sbjct: 383 SPFRQNMKPVYSYVKSRGFYAGVQVDGTVVTERKDANAAFYGVQGVTVAQIL-KGEVPPA 441 Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 G + D + ++ IV A G ++ GD Sbjct: 442 AGTA-----WDRHAKALHDIVRGAEGFSA--GDQ 468 >gi|86609671|ref|YP_478433.1| primosome assembly protein PriA [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558213|gb|ABD03170.1| primosomal protein N' [Synechococcus sp. JA-2-3B'a(2-13)] Length = 801 Score = 37.3 bits (85), Expect = 7.5, Method: Composition-based stats. Identities = 21/145 (14%), Positives = 49/145 (33%), Gaps = 13/145 (8%) Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + G + F +L R + L +V T+L L + RR+ + +GE Sbjct: 61 EAVVAKGILPKEFWPLLQRVADYYLTPLAQVVRTVLPPGLLSRSQRRVRLLRLPAEGEEC 120 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL--- 532 + + + A G + + + + + S+ +Q R+ Sbjct: 121 SPAAQTLLQLLQA-KGGELSWRYVQQQVPTAALALRELQRRGWVESFWQEQQGGRVRTQL 179 Query: 533 --HMIEINEE-------RFAKILRK 548 + + + E + +IL++ Sbjct: 180 AASLADDSPEGLSLPQQKALQILKQ 204 >gi|257870588|ref|ZP_05650241.1| DNA mismatch repair protein [Enterococcus gallinarum EG2] gi|257804752|gb|EEV33574.1| DNA mismatch repair protein [Enterococcus gallinarum EG2] Length = 710 Score = 37.3 bits (85), Expect = 7.7, Method: Composition-based stats. Identities = 52/307 (16%), Positives = 106/307 (34%), Gaps = 44/307 (14%) Query: 69 EANIDFRISDNGSSISVPS---------SMVGKARIHLAAQG-----LPSSSSNSGYELF 114 E +I + G+ I+V + V + LA G + S + L Sbjct: 132 EEHIPANLR-QGTKITVENLFYNTPARLKYVKTLQTELANIGDIVNRIALSHPEVAFRLV 190 Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS------FRKIG 168 + N T+ G++ +TI I G+ A+ + + + + Sbjct: 191 HEGNKMLTTTG----------SGDLKQTIAGIYGVETAKKMLAINSEDLDFKLTGYVSLP 240 Query: 169 ARPTAS--VMIRAINPSVYKSAEAIRHLVAAAVPNLDMGD--VTVLDSTGKLLTANEMER 224 AS + IN ++ + +VA L +G + VL+ T L ++ Sbjct: 241 EVTRASRNYLSTIINGRYIRNFALNKAIVAGYGSKLMVGRFPIAVLEITMDPLL---VDV 297 Query: 225 NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV 284 N+ + + + E+ I+K++ L +N L + E V + Sbjct: 298 NVHPTKQEVRLSKEEELTKLISKSINDSLREENLIPNAADNLRFKKKVTTEPVEQTKLDL 357 Query: 285 ERSIRLS------KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNY 338 S S ++ + + + TV+ + + + LP S E +K E S Y Sbjct: 358 GTSPTTSSGLTFNRETGKFQVASSGYQQTVDNFVENPVEEGGKLPESAEQREKAPESSAY 417 Query: 339 EINTKSI 345 + +++ Sbjct: 418 SVENQAV 424 >gi|116326412|ref|YP_803132.1| base plate hub [Enterobacteria phage RB32] gi|115344005|gb|ABI95014.1| base plate hub [Enterobacteria phage RB32] Length = 590 Score = 37.3 bits (85), Expect = 7.7, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 60/197 (30%), Gaps = 15/197 (7%) Query: 167 IGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER 224 A +AS + +N K A+A L+A V + +D+ ++ Sbjct: 22 QEAAKSASNTLSGLNDISTKLDDAQAASELIAQTVEEKSNEIIGAIDNVESAVSDTTAGS 81 Query: 225 NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV 284 ++ +++ I I EI ++ L + + T P Sbjct: 82 ELIAETVEIGNNINKEIGESLGSKLDKLTSLLEQKIQTAGIQQTGTSLATVESAIP---- 137 Query: 285 ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKS 344 +++ +D A N P P P + +E+Q N K Sbjct: 138 ---VKVVEDDTAESVGPLLPAPEAVNNDPDADFFPAPQPVEPKQESPEEKQKKEAFNLKL 194 Query: 345 IATTHDNYKLERLSIAV 361 L++L+ V Sbjct: 195 SQ------ALDKLTKTV 205 >gi|42524410|ref|NP_969790.1| hypothetical protein Bd3014 [Bdellovibrio bacteriovorus HD100] gi|39576619|emb|CAE80783.1| fliG [Bdellovibrio bacteriovorus HD100] Length = 577 Score = 37.3 bits (85), Expect = 7.7, Method: Composition-based stats. Identities = 34/297 (11%), Positives = 88/297 (29%), Gaps = 69/297 (23%) Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 ++ E L L ++ V E++ D ++++E Sbjct: 29 LETVYEARARSVLNTILRPTDYTLVVAIEMDRDEKKLKEFH------------------- 69 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 E V MP + D + + + K + Sbjct: 70 -----DEMDVQYLPGMPLMGDAPTLGKATNKLHEMKSKTD-------------------- 104 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 I+VV+++ E I +++++ +++ GD++T+ ++ Sbjct: 105 --ISVVLSRNVNPETE-------------KIIKELLTSKLHLDATAGDSVTVKRIE--LP 147 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA--------LRRLHNIDD 468 + + L+ T+I + L + L+ + L+ H Sbjct: 148 ADPPKAEPKPDILPELTWKMWTLIVIMSLLALSGLMFWAWRRGRAQDPRKELKENHEYKH 207 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 +K + G + ++ + +D+ Q I + + + V++ Sbjct: 208 TEKDQDGEEKPEEVVAAATEPAAAAVVEPQFNMDAVKQHILAIAAQYPQLASRAVTE 264 >gi|312371115|gb|EFR19375.1| hypothetical protein AND_22596 [Anopheles darlingi] Length = 1169 Score = 36.9 bits (84), Expect = 8.4, Method: Composition-based stats. Identities = 40/259 (15%), Positives = 86/259 (33%), Gaps = 24/259 (9%) Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN----ILGKSLSIVQAIQ 238 + + + ++ + A+ N+ G + G ++ R +LG + Q Sbjct: 309 GLVGTEKRVQRMAQGALLNISYGRASNGHQRGGKQSSAADVRTTHHIVLGNMSNNQNGPQ 368 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 I+ +N+ + G N + ++ + V P RS+ + + Sbjct: 369 SSIQHRVNERIGKRNGTRNVPNEKASQQE-NRVSEPSTVNSP-----RSVTTQQATKHQP 422 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDK--KEEQSNY---EINTKSIATTHDNYK 353 + + +T N+P ++ E K KE +N E + K IA N Sbjct: 423 MEKQAAILTTPNNVPSADIQQQQRKNEFERFWKKLKESTNNSAFDENDIKHIAQVMSNSA 482 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVS----AATGINSRRGDTITIT 409 L+ SI V ++ + Q D + K++ G + + GD Sbjct: 483 LQPESITVGLSDKTEKPQSVTTTVQPDGDQMTGMLKKMLRINDGQQEGKSQQTGD----- 537 Query: 410 SMDFLENQLFNSGTVQVSF 428 ++ L + + + Sbjct: 538 GAPLVQPPLASLPKPPLQW 556 >gi|257063566|ref|YP_003143238.1| penicillin-binding protein, 1A family [Slackia heliotrinireducens DSM 20476] gi|256791219|gb|ACV21889.1| penicillin-binding protein, 1A family [Slackia heliotrinireducens DSM 20476] Length = 723 Score = 36.9 bits (84), Expect = 8.5, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 48/118 (40%), Gaps = 6/118 (5%) Query: 148 GIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDV 207 G+ + V I + + + +P ++ + + + A A L A V + + V Sbjct: 447 GVSPSSV-IEIANRMGLNEDSLQPYPTITLGVFGVNTTQMASAYGTLAAGGVHHEPVAIV 505 Query: 208 TVLDSTGKL---LTANEMERNILGKSLSI--VQAIQHEIEMNINKALAAFLGVDNFRS 260 T+ D+ G + L+ ++ +S++ + ++ I +I A AA L + Sbjct: 506 TITDANGNVIEDLSEGSEGEQVISESVAYAVTRVLEGVITKSIGTANAAALPSGQVAA 563 >gi|307700390|ref|ZP_07637429.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Mobiluncus mulieris FB024-16] gi|307614375|gb|EFN93605.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Mobiluncus mulieris FB024-16] Length = 378 Score = 36.9 bits (84), Expect = 8.7, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 12/121 (9%) Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497 + ++ +VGT L L A R LH I+ G PP + G + N Sbjct: 22 MISTLIIAMVGTFLSNILVGRAFRPLHQIESVANKIAAGDLSKRIPPAPTTTEVGSLSNS 81 Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDL------------RLLHMIEINEERFAKI 545 + S + FS + ++ +VS S L M + ER A++ Sbjct: 82 LNIMLSHLEQAFSAVELSERKMRRFVSDASHELRTPTAAIRGYAELYRMGGVEPERQAEV 141 Query: 546 L 546 + Sbjct: 142 M 142 >gi|115523564|ref|YP_780475.1| methyl-accepting chemotaxis sensory transducer [Rhodopseudomonas palustris BisA53] gi|115517511|gb|ABJ05495.1| methyl-accepting chemotaxis sensory transducer [Rhodopseudomonas palustris BisA53] Length = 567 Score = 36.9 bits (84), Expect = 8.8, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 43/116 (37%), Gaps = 1/116 (0%) Query: 431 ILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVT 490 S + + A+V L+ ++ + + LH + DA K GGK + P I + Sbjct: 191 WASTQRSLIAAAVVLLISLVVSVIMAGRITKPLHRMTDAMKALAGGKLDVEVPGIGRSDE 250 Query: 491 TGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546 G M + + + SN Q + + + Q + E ++I+ Sbjct: 251 IGEMA-EAVEVFKSNGIARQRLEAEQHELEARAAAQRKADTNKLANDFESAVSEII 305 >gi|326502008|dbj|BAK06496.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 551 Score = 36.9 bits (84), Expect = 9.0, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 32/108 (29%), Gaps = 6/108 (5%) Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPP----PISSAVTTGLMPNDNIALDSSNQDIFSH 511 G LRRL + E S +P P+ + P D + Sbjct: 9 GARLLRRLLSTAAEVAREAAPPSAKNPKRAARPVGKRAARAVAPQDAKVAAHPAAEPAPD 68 Query: 512 SRNLQSRINSYVSKQSD--LRLLHMIEINEERFAKILRKWARSEIEDR 557 + + + + RL + E + +L KW R E R Sbjct: 69 AESAKKAAAAGTKDSRPLYRRLSALGNAGEGSVSAVLNKWLREGRETR 116 >gi|228861505|ref|YP_002854526.1| gp29 base plate hub [Enterobacteria phage RB14] gi|227438521|gb|ACP30834.1| gp29 base plate hub [Enterobacteria phage RB14] Length = 590 Score = 36.9 bits (84), Expect = 9.5, Method: Composition-based stats. Identities = 63/423 (14%), Positives = 121/423 (28%), Gaps = 61/423 (14%) Query: 167 IGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER 224 A +AS + +N K A+A L+A V + +D+ ++ Sbjct: 22 QEAAKSASNTLSGLNDISTKLDDAQAASELIAQTVEEKSNEIIGAIDNVESAVSDTTAGS 81 Query: 225 NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV 284 ++ +++ I I EI ++ L + + T P Sbjct: 82 ELIAETVEIGNNINKEIGESLGSKLDKLTSLLEQKIQTAGIQQTGTSLATVESAIP---- 137 Query: 285 ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKS 344 +++ +D A N P P P + +E+Q N K Sbjct: 138 ---VKVVEDDTAESVGPLLPAPEAVNNDPDADFFPTPQPVEPKQESPEEKQKKEAFNLKL 194 Query: 345 IATTHDNYKLERLSIAV---------VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395 L++L+ V + +K + + A I +V Sbjct: 195 SQ------ALDKLTKTVDFGFKKSISITDKISSMLFKYTVSAAIEAAKMTAMILAVV--- 245 Query: 396 TGIN-------------SRRGDTITITSMDFLENQLFNSGTVQVSFMD-------ILSRH 435 GI+ S+ D F +Q F + Sbjct: 246 VGIDLLMVHFKYWSDKFSKAWDLFNTDFTKFSSETGTWGPLLQSIFDSIDKIKQLWEAGD 305 Query: 436 FATVINALVFLVGTLLVTFLGLHAL---------RRLHNIDDAKKGEVGGKSILSPPPIS 486 + + A+V +G++L L L R+ EV G+++ + + Sbjct: 306 WGGLTAAIVEGLGSVLFNLGELIQLGMAKLSAAILRVIPGMKDTADEVEGRALENFQNST 365 Query: 487 SAVTTGLMPN--DNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR---LLHMIEINEER 541 A N N D+ ++ L N + +R + +EER Sbjct: 366 GASLNKEDQEKVANYQDKRMNGDLGPIAKGLDKIANWKTRASNWIRGVDNKEALTTDEER 425 Query: 542 FAK 544 A+ Sbjct: 426 AAE 428 >gi|330858710|ref|YP_004415085.1| putative baseplate hub subunit and tail length determinator [Shigella phage Shfl2] gi|327397644|gb|AEA73146.1| putative baseplate hub subunit and tail length determinator [Shigella phage Shfl2] Length = 590 Score = 36.9 bits (84), Expect = 9.7, Method: Composition-based stats. Identities = 63/423 (14%), Positives = 121/423 (28%), Gaps = 61/423 (14%) Query: 167 IGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER 224 A +AS + +N K A+A L+A V + +D+ ++ Sbjct: 22 QEAAKSASNTLSGLNDISTKLDDAQAASELIAQTVEEKSNEIIGAIDNVESAVSDTTAGS 81 Query: 225 NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV 284 ++ +++ I I EI ++ L + + T P Sbjct: 82 ELIAETVEIGNNINKEIGESLGSKLDKLTSLLEQKIQTAGIQQTGTSLATVESAIP---- 137 Query: 285 ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKS 344 +++ +D A N P P P + +E+Q N K Sbjct: 138 ---VKVVEDDTAESVGPLLPAPEAVNNDPDADFFPTPQPVEPKQESPEEKQKKEAFNLKL 194 Query: 345 IATTHDNYKLERLSIAV---------VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395 L++L+ V + +K + + A I +V Sbjct: 195 SQ------ALDKLTKTVDFGFKKSISITDKISSMLFKYTVSAAIEAAKMTAMILAVV--- 245 Query: 396 TGIN-------------SRRGDTITITSMDFLENQLFNSGTVQVSFMD-------ILSRH 435 GI+ S+ D F +Q F + Sbjct: 246 VGIDLLMVHFKYWSDKFSKAWDLFNTDFTKFSSETGTWGPLLQSIFDSIDKIKQLWEAGD 305 Query: 436 FATVINALVFLVGTLLVTFLGLHAL---------RRLHNIDDAKKGEVGGKSILSPPPIS 486 + + A+V +G++L L L R+ EV G+++ + + Sbjct: 306 WGGLTAAIVEGLGSVLFNLGELIQLGMAKLSAAILRVIPGMKDTADEVEGRALENFQNTT 365 Query: 487 SAVTTGLMPN--DNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR---LLHMIEINEER 541 A N N D+ ++ L N + +R + +EER Sbjct: 366 GASLNKEDQEKVANYQDKRMNGDLGPIAKGLDKIANWKTRASNWIRGVDNKEALTTDEER 425 Query: 542 FAK 544 A+ Sbjct: 426 AAE 428 >gi|299780553|gb|ADJ39915.1| baseplate hub subunit tail length determinator [Enterobacteria phage T4T] Length = 590 Score = 36.9 bits (84), Expect = 9.7, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 60/197 (30%), Gaps = 15/197 (7%) Query: 167 IGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER 224 A +AS + +N K A+A L+A V + +D+ ++ Sbjct: 22 QEAAKSASNTLSGLNDISTKLDDAQAASELIAQTVEEKSNEIIGAIDNVESAVSDTTAGS 81 Query: 225 NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV 284 ++ +++ I I EI ++ L + + T P Sbjct: 82 ELIAETVEIGNNINKEIGESLGSKLDKLTSLLEQKIQTAGIQQTGTSLATVESAIP---- 137 Query: 285 ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKS 344 +++ +D A N P P P + +E+Q N K Sbjct: 138 ---VKVVEDDTAESVGPLLPAPEAVNNDPDADFFPTPQPVEPKQESPEEKQKKEAFNLKL 194 Query: 345 IATTHDNYKLERLSIAV 361 L++L+ V Sbjct: 195 SQ------ALDKLTKTV 205 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.309 0.138 0.347 Lambda K H 0.267 0.0420 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8,580,306,742 Number of Sequences: 14124377 Number of extensions: 328478001 Number of successful extensions: 1444426 Number of sequences better than 10.0: 2344 Number of HSP's better than 10.0 without gapping: 2812 Number of HSP's successfully gapped in prelim test: 1187 Number of HSP's that attempted gapping in prelim test: 1427409 Number of HSP's gapped (non-prelim): 4934 length of query: 563 length of database: 4,842,793,630 effective HSP length: 145 effective length of query: 418 effective length of database: 2,794,758,965 effective search space: 1168209247370 effective search space used: 1168209247370 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 84 (36.9 bits)