BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780695|ref|YP_003065108.1| flagellar MS-ring protein
[Candidatus Liberibacter asiaticus str. psy62]
         (563 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780695|ref|YP_003065108.1| flagellar MS-ring protein [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040372|gb|ACT57168.1| flagellar MS-ring protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 563

 Score = 1140 bits (2950), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 563/563 (100%), Positives = 563/563 (100%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV
Sbjct: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF
Sbjct: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI
Sbjct: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240
           NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE
Sbjct: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS
Sbjct: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA
Sbjct: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN
Sbjct: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
           SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL
Sbjct: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
           SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE
Sbjct: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540

Query: 541 RFAKILRKWARSEIEDRYTQHIS 563
           RFAKILRKWARSEIEDRYTQHIS
Sbjct: 541 RFAKILRKWARSEIEDRYTQHIS 563


>gi|315121860|ref|YP_004062349.1| flagellar MS-ring protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495262|gb|ADR51861.1| flagellar MS-ring protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 560

 Score =  858 bits (2218), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/560 (75%), Positives = 480/560 (85%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           MAI+DQLLQFFKS  SLGR R+ I+ +V+   I L +AA FF++SP YD+LYVKLE SDV
Sbjct: 1   MAIIDQLLQFFKSAMSLGRMRLFIVGAVMFASIALLLAASFFMSSPIYDSLYVKLEASDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           N+ISVALSEA+IDFRI+ NGSSI VPS ++ KAR+ LA QGLP+SS+NSGYELFDKVNSF
Sbjct: 61  NKISVALSEASIDFRIAGNGSSILVPSHLLSKARLRLAEQGLPNSSNNSGYELFDKVNSF 120

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQEITRVRALEGEI+RTIQ ISGIVAARVHIVMPDMGSFR+IGA+PTASVM+R +
Sbjct: 121 GLTSFMQEITRVRALEGEISRTIQDISGIVAARVHIVMPDMGSFRRIGAKPTASVMVRVV 180

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240
           NPSVYKSAEAIRHLVAAAVP LD+ DVTVLDSTGKLL ANE+ERNI GKSL IVQA+QHE
Sbjct: 181 NPSVYKSAEAIRHLVAAAVPGLDISDVTVLDSTGKLLVANEIERNIFGKSLGIVQAVQHE 240

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           IEMNINKALA FLG+DNFRSAV+AELN D QQI+EIVYDPDS+VERS+RLSKD QRSE+ 
Sbjct: 241 IEMNINKALAPFLGIDNFRSAVIAELNTDIQQIKEIVYDPDSRVERSVRLSKDVQRSESH 300

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           Q ESAVTVEQNMPHVS++    PR+LENTDKKEEQSNYEINTKSI+TTH+NYKLERLSIA
Sbjct: 301 QQESAVTVEQNMPHVSEKNATSPRALENTDKKEEQSNYEINTKSISTTHNNYKLERLSIA 360

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           VVVNKGRL E+LG S +Q K+DSYLAEIN+IVSAATGINS RGD ITITSMDFL++QL N
Sbjct: 361 VVVNKGRLMEMLGPSMEQSKVDSYLAEINRIVSAATGINSIRGDNITITSMDFLDDQLLN 420

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
           S TVQVSFMDILSR+F+ +INAL FL   LL+   G+H LR  +NID  K+ E+  KS L
Sbjct: 421 SSTVQVSFMDILSRNFSIIINALFFLTLVLLMALFGVHVLRGFNNIDLIKRKEMEAKSAL 480

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
           S P I+S   T LM +D++A DS  QDI S + N QS IN+YV++QSD RLL MIEINEE
Sbjct: 481 STPSIASTAETTLMSSDDMASDSFRQDILSRNNNFQSDINNYVAEQSDRRLLRMIEINEE 540

Query: 541 RFAKILRKWARSEIEDRYTQ 560
           RF+KI+RKW RSEIE RYTQ
Sbjct: 541 RFSKIIRKWVRSEIESRYTQ 560


>gi|241203091|ref|YP_002974187.1| flagellar MS-ring protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240856981|gb|ACS54648.1| flagellar M-ring protein FliF [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 563

 Score =  562 bits (1449), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 303/565 (53%), Positives = 400/565 (70%), Gaps = 16/565 (2%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M +L+QL+Q FK+  SLGRTR++IL  V  V I + +AA  FVN P  + LYV L+  D+
Sbjct: 1   MNLLNQLVQIFKNFGSLGRTRLMILGGVGAVSIAIVLAAALFVNKPAQETLYVGLDSPDL 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           N+IS+AL+EANI+F++  +G+SISVP+ M GKAR+ LA +GLP+S+ N+GYELFD V S 
Sbjct: 61  NQISMALAEANINFQVGTDGTSISVPAGMTGKARLMLAERGLPNSA-NAGYELFDNVGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEIARTIQSISGI AARVHIVMP++G+FRK   +PTASVMIRA 
Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQSISGITAARVHIVMPEVGNFRKAEQKPTASVMIRAS 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239
             +   +A +IRHLVA+AVP LD+ DVT+LDS G+LL + +E   + L +SL+IVQ +Q 
Sbjct: 180 ATTGRSAATSIRHLVASAVPGLDVDDVTILDSAGQLLASGDEASNSSLNRSLNIVQNVQQ 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           E+E NI+KALA FLG+DNFRS+V A+LN D QQI+E  YDP+SKVERS+R +K+AQ+S+ 
Sbjct: 240 EVESNIDKALAPFLGMDNFRSSVTADLNTDAQQIQETTYDPESKVERSVRSTKEAQQSQQ 299

Query: 300 SQPESAVTVEQNMPHVSDRK--VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
            Q +SA TVEQN+P  +        P S + +DK+EEQ+NYEIN+K+ ATT  +YK+E+L
Sbjct: 300 KQSDSATTVEQNIPQAAPEAGGSAGPESQDKSDKREEQTNYEINSKTTATTRSSYKVEKL 359

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           SIAVVVNKGR+ +++G  ADQ K+D+YLAE+ KIV++A GI+++RGD +T+T+MDFLENQ
Sbjct: 360 SIAVVVNKGRIAKMVGEPADQTKVDAYLAEMQKIVASAAGIDAKRGDVVTVTAMDFLENQ 419

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR--LHNIDDAKKG--- 472
           L    T  V  MD+LSR+ A +IN+L F+    LV ++GL  L R    N   A  G   
Sbjct: 420 LLEDATGGVRVMDMLSRNLAGIINSLAFVAVAFLVVWMGLRPLVRSVSGNGSSAAFGDAT 479

Query: 473 -EVGGKSILSPPPISSAVTTGLMPNDNIALD---SSNQDIFSHSRNLQSRINSYVSKQSD 528
            E  G  +    P S A    LM  D    D    S +D+ S   +     N  V +  +
Sbjct: 480 PEAAGLELPDFAPASGAPGGALM--DGFGSDFGFDSTEDLLSLGDD-DGNFNRRVKEGPE 536

Query: 529 LRLLHMIEINEERFAKILRKWARSE 553
            +L  M+EINEER AKILRKWA  E
Sbjct: 537 RKLSRMVEINEERAAKILRKWAIDE 561


>gi|327193018|gb|EGE59930.1| flagellar M-ring protein [Rhizobium etli CNPAF512]
          Length = 563

 Score =  562 bits (1448), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 297/562 (52%), Positives = 399/562 (70%), Gaps = 16/562 (2%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M +L+QL+Q FK+  +LGRTR++IL  V  + I + +AA  FVN P  + LYV L+  D+
Sbjct: 1   MNLLNQLVQIFKNFGALGRTRLMILGGVGALSIAIILAAALFVNKPAQETLYVGLDAPDL 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           N+IS+AL+EANI+F++  +G+SISVP+ M GKAR+ LA +GLP+S+ N+GYELFD V S 
Sbjct: 61  NQISMALAEANINFQVGTDGASISVPAGMTGKARLMLAERGLPNSA-NAGYELFDNVGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEIARTIQSISGI AARVHIVMP++G+FRK   +PTASVMIRA 
Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQSISGITAARVHIVMPEVGNFRKAEQKPTASVMIRAS 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239
             +   +A +IRHLVA+AVP LD+ DVT+LDS G+LL + +E   + L +SL+IVQ +Q 
Sbjct: 180 AATGRSAATSIRHLVASAVPGLDVDDVTILDSAGQLLASGDEASNSSLNRSLNIVQNVQQ 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           E+E NI+KALA FLG+DNFRS+V A+LN D QQI+E  YDP+SKVERS+R +K+AQ+S+ 
Sbjct: 240 EVESNIDKALAPFLGMDNFRSSVTADLNTDAQQIQETTYDPESKVERSVRSTKEAQQSQQ 299

Query: 300 SQPESAVTVEQNMPHVSDRK--VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
            Q ++A TVEQN+P  +        P S + +DK+EEQ+NYEIN+K+ ATT ++YK+E+L
Sbjct: 300 KQSDNATTVEQNIPQAAPDAGGASGPESQDKSDKREEQTNYEINSKTTATTRNSYKVEKL 359

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           SIAVVVNKGR+ +++G  ADQ K+D+YLAE+ KIV++A GI+++RGD +T+T+MDFLENQ
Sbjct: 360 SIAVVVNKGRIAKMVGEPADQAKVDAYLAEMQKIVASAAGIDAKRGDVVTVTAMDFLENQ 419

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR--LHNIDDAKKG--- 472
           L    T  V  MD+LSR+ A +IN+L F+    +V ++GL  L R    N   A  G   
Sbjct: 420 LLEDATGGVRVMDMLSRNLAGIINSLAFVAVAFVVVWMGLRPLVRSVTGNGASAVLGDAT 479

Query: 473 -EVGGKSILSPPPISSAVTTGLMPNDNIALD---SSNQDIFSHSRNLQSRINSYVSKQSD 528
            E  G  +    P   A    LM  D    D    S +D+ S   +     N  V +  +
Sbjct: 480 PEAAGLELPDFAPAVGAPGGALM--DGFGSDFGFDSTEDLLSLGDD-DGNFNRRVKEGPE 536

Query: 529 LRLLHMIEINEERFAKILRKWA 550
            +L  M+EINEER AKILRKWA
Sbjct: 537 RKLARMVEINEERAAKILRKWA 558


>gi|190890348|ref|YP_001976890.1| flagellar M-ring protein [Rhizobium etli CIAT 652]
 gi|190695627|gb|ACE89712.1| flagellar M-ring protein [Rhizobium etli CIAT 652]
          Length = 563

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 295/562 (52%), Positives = 399/562 (70%), Gaps = 16/562 (2%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M +L+QL+Q FK+  +LGRTR++IL  V  + I + +AA  FVN P  + LYV L+  D+
Sbjct: 1   MNLLNQLVQIFKNFGALGRTRLMILGGVGALSIAIILAAALFVNKPAQETLYVGLDAPDL 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           N+IS+AL+EANI+F++  +G+SISVP+ M GKAR+ LA +GLP+S+ N+GYELFD V S 
Sbjct: 61  NQISMALAEANINFQVGTDGASISVPAGMTGKARLMLAERGLPNSA-NAGYELFDNVGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEIARTIQSISGI AARVHIVMP++G+FRK   +PTASVMIRA 
Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQSISGITAARVHIVMPEVGNFRKAEQKPTASVMIRAS 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239
             +   +A +IRHLVA+AVP LD+ DVT+LDS G+LL + +E   + L +SL+IVQ +Q 
Sbjct: 180 AATGRSAATSIRHLVASAVPGLDVDDVTILDSAGQLLASGDEASNSSLNRSLNIVQNVQQ 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           E+E NI+KALA FLG+DNFRS+V A+LN D QQI+E  YDP+SKVERS+R +K+AQ+S+ 
Sbjct: 240 EVESNIDKALAPFLGMDNFRSSVTADLNTDAQQIQETTYDPESKVERSVRSTKEAQQSQQ 299

Query: 300 SQPESAVTVEQNMPHVSDRK--VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
            Q ++A TVEQN+P  +        P S + +DK+EEQ+NYEIN+++ ATT ++YK+E+L
Sbjct: 300 KQSDNATTVEQNIPQAAPDAGGASGPESQDKSDKREEQTNYEINSRTTATTRNSYKVEKL 359

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           SIAVVVNKGR+ +++G  ADQ KID+YLAE+ KIV++A GI+++RGD +T+T+MDFLENQ
Sbjct: 360 SIAVVVNKGRIAKMVGEPADQAKIDAYLAEMQKIVASAAGIDAKRGDVVTVTAMDFLENQ 419

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK------ 471
           L    T  V  MD+LSR+ A +IN+L F+    +V ++GL  L R  + + A        
Sbjct: 420 LLEDATGGVRVMDMLSRNLAGIINSLAFVAVAFVVVWMGLRPLVRSVSGNGASAVLGDAT 479

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALD---SSNQDIFSHSRNLQSRINSYVSKQSD 528
            E  G  +    P   A    LM  D    D    S +D+ S   +     N  V +  +
Sbjct: 480 PEAAGLELPDFAPAVGAPGGALM--DGFGSDFGFDSTEDLLSLGDD-DGNFNRRVKEGPE 536

Query: 529 LRLLHMIEINEERFAKILRKWA 550
            +L  M+EINEER AKILRKWA
Sbjct: 537 RKLARMVEINEERAAKILRKWA 558


>gi|116250467|ref|YP_766305.1| flagellar MS-ring protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255115|emb|CAK06189.1| putative flagellar M-ring protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 561

 Score =  558 bits (1439), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 302/563 (53%), Positives = 400/563 (71%), Gaps = 14/563 (2%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M +L+QL+Q FK+  SLGRTR++IL  V  + I + +AA  FVN P  + LYV L+  D+
Sbjct: 1   MNLLNQLVQIFKNFGSLGRTRLMILGGVGALSIAIILAAALFVNKPAQETLYVGLDSPDL 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           N+IS+AL+EANI+F++  +GSSISVP+ M GKAR+ LA +GLP+S+ N+GYELFD V S 
Sbjct: 61  NQISMALAEANINFQVGTDGSSISVPAGMTGKARLMLAERGLPNSA-NAGYELFDNVGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEIARTIQSISGI AARVHIVMP++G+FRK   +PTASVMIRA 
Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQSISGITAARVHIVMPEVGNFRKAEQKPTASVMIRAS 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239
             +   +A +IRHLVA+AVP LD+ DVT+LDS G+LL + +E   + L +SL+IVQ +Q 
Sbjct: 180 ATTGRSAATSIRHLVASAVPGLDVDDVTILDSAGQLLASGDEASNSSLNRSLNIVQNVQQ 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           E+E NI+KALA FLG+DNFRS+V A+LN D QQI+E  YDP+SKVERS+R +K+AQ+S+ 
Sbjct: 240 EVESNIDKALAPFLGMDNFRSSVTADLNTDAQQIQETTYDPESKVERSVRSTKEAQQSQQ 299

Query: 300 SQPESAVTVEQNMPHVSDRK--VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
            Q +SA TVEQN+P  +        P S + +DK+EEQ+NYEIN+K+ ATT  +YK+E+L
Sbjct: 300 KQSDSATTVEQNIPQAAPEAGGSAGPESQDKSDKREEQTNYEINSKTTATTRSSYKVEKL 359

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           SIAVVVNKGR+ +++G  ADQ K+D+YLAE+ KIV++A GI+++RGD +T+T+MDFLENQ
Sbjct: 360 SIAVVVNKGRIAKMVGEPADQAKVDAYLAEMQKIVASAAGIDAKRGDVVTVTAMDFLENQ 419

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG----E 473
           L    T  V  MD+LSR+ A +IN+L F+    +V ++GL  L R  N   A  G    E
Sbjct: 420 LLEDATGGVRVMDMLSRNLAGIINSLAFVAVAFVVVWMGLRPLVRSINGTSAAFGDATPE 479

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALD---SSNQDIFSHSRNLQSRINSYVSKQSDLR 530
             G  +    P S A    LM  D    D    S +D+ S   +     N  V +  + +
Sbjct: 480 AAGLELPDFAPASGAPGGALM--DGFGSDFGFDSTEDLLSLGDD-DGNFNRRVKEGPERK 536

Query: 531 LLHMIEINEERFAKILRKWARSE 553
           L  M+EINEER AKILRKWA  E
Sbjct: 537 LSRMVEINEERAAKILRKWAIDE 559


>gi|86356297|ref|YP_468189.1| flagellar MS-ring protein [Rhizobium etli CFN 42]
 gi|86280399|gb|ABC89462.1| flagellar M-ring protein [Rhizobium etli CFN 42]
          Length = 563

 Score =  556 bits (1433), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 298/563 (52%), Positives = 402/563 (71%), Gaps = 18/563 (3%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M +L+QL+Q FK+  +LGRTR++IL  V  V I + +AA  FVN P  + LYV L+  D+
Sbjct: 1   MNLLNQLVQIFKNFGALGRTRLMILGGVGSVSIAIILAAALFVNKPAQETLYVGLDAPDL 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           N+IS+AL+EANI+F++  +GSSI+VP+ M GKAR+ LA +GLP+S+ N+GYELFD V S 
Sbjct: 61  NQISMALAEANINFQVGTDGSSITVPAGMTGKARLMLAERGLPNSA-NAGYELFDNVGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEIARTIQSISGI AARVHIVMP++G+FRK   +PTASVMIRA 
Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQSISGITAARVHIVMPEVGNFRKAEQKPTASVMIRAS 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239
             +   +A +IRHLVA+AVP LD+ DVT+LDS G+LL + +E   + L +SL+IVQ +Q 
Sbjct: 180 AATGRSAATSIRHLVASAVPGLDVDDVTILDSAGQLLASGDEASNSSLNRSLNIVQNVQQ 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           E+E NI+KALA FLG+DNFRS+V A+LN D QQI+E VYDP+SKVERS+R +K+AQ+S+ 
Sbjct: 240 EVESNIDKALAPFLGMDNFRSSVTADLNTDAQQIQETVYDPESKVERSVRSTKEAQQSQQ 299

Query: 300 SQPESAVTVEQNMPHVSDRK--VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
            Q ++A TVEQN+P  +        P S + +DK+EEQ+NYEIN+K+ ATT ++Y++E+L
Sbjct: 300 RQSDNATTVEQNIPQAAPDAGGSGGPESQDKSDKREEQTNYEINSKTTATTRNSYQVEKL 359

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           SIAVVVNKGR+ +++G  ADQ KID+YLAE++KIV++A GI+++RGD +T+T+MDFLENQ
Sbjct: 360 SIAVVVNKGRIAKMVGEPADQAKIDAYLAEMHKIVASAAGIDAKRGDVVTVTAMDFLENQ 419

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR-------LHNIDDAK 470
           L    T  V  MD+LSR+ A +IN+L F+    +V ++GL  L R          + DA 
Sbjct: 420 LLEDATGGVRVMDMLSRNLAGIINSLAFVAVAFVVVWMGLRPLVRSVSGNGSSSVLGDAT 479

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALD---SSNQDIFSHSRNLQSRINSYVSKQS 527
             E  G  +    P + A    LM  D    D    S +D+ S   +     N  V +  
Sbjct: 480 P-EAAGLELPDFAPAAGAAGGALM--DGFGSDFGFDSTEDLLSLGDD-DGNFNRRVKEGP 535

Query: 528 DLRLLHMIEINEERFAKILRKWA 550
           + +L  M+EINEER AKILRKWA
Sbjct: 536 ERKLARMVEINEERAAKILRKWA 558


>gi|209547913|ref|YP_002279830.1| flagellar MS-ring protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209533669|gb|ACI53604.1| flagellar M-ring protein FliF [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 563

 Score =  548 bits (1412), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 300/566 (53%), Positives = 402/566 (71%), Gaps = 18/566 (3%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M +L+QL+Q FK+  SLGRTR++IL  V  V I + +AA  FVN P  + LYV L+  D+
Sbjct: 1   MNLLNQLVQIFKNFGSLGRTRLMILGGVGAVSIAIVLAAALFVNKPAQETLYVGLDSPDL 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           N+IS+AL+EAN+DF++  +G+SISVP+ M GKAR+ LA +GLP+S+ N+GYELFD V S 
Sbjct: 61  NQISMALAEANVDFQVGTDGTSISVPAGMTGKARLLLAERGLPNSA-NAGYELFDNVGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEIARTIQSISGI AARVHIVMP++G+FRK   +PTASVMIRA 
Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQSISGITAARVHIVMPEVGNFRKAEQKPTASVMIRAS 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239
             +   +A +IRHLVA+AVP LD+ DVT+LDS G+LL + +E   + L +SL+IVQ +Q 
Sbjct: 180 ATTGRSAATSIRHLVASAVPGLDVDDVTILDSAGQLLASGDEASNSSLNRSLNIVQNVQQ 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           E+E NI+KALA FLG+DNFRS+V A+LN D QQI+E  YDP+SKVERS+R +K+AQ+S+ 
Sbjct: 240 EVESNIDKALAPFLGMDNFRSSVTADLNTDAQQIQETTYDPESKVERSVRSTKEAQQSQQ 299

Query: 300 SQPESAVTVEQNMPHVSDRK--VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
            Q +SA TVEQN+P  +        P S + +DK+EEQ+NYEIN+++ ATT ++YK+E+L
Sbjct: 300 KQSDSATTVEQNIPQAAPEAGGSAGPESQDKSDKREEQTNYEINSRTTATTRNSYKVEKL 359

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           SIAVVVNKGR+ +++G  ADQ KID+YLAE+ KIV++A+GI+++RGD +T+T+MDFLENQ
Sbjct: 360 SIAVVVNKGRIAKMVGEPADQAKIDAYLAEMQKIVASASGIDAKRGDVVTVTAMDFLENQ 419

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR-------LHNIDDAK 470
           L    T  V  MD+LSR+ A +IN+L F+    +V ++GL  L R          + DA 
Sbjct: 420 LLEDATGGVRVMDMLSRNLAGIINSLAFVAVAFVVVWMGLRPLVRSVSGNGSSSVLGDAT 479

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALD---SSNQDIFSHSRNLQSRINSYVSKQS 527
             E  G  +    P + A    LM  D    D    S +D+ S   +     N  V +  
Sbjct: 480 P-EAAGLELPDFAPAAGASGGALM--DGFGSDFGFDSTEDLLSLGDD-DGNFNRRVKEGP 535

Query: 528 DLRLLHMIEINEERFAKILRKWARSE 553
           + +L  M+EINEER AKILRKWA  E
Sbjct: 536 ERKLSRMVEINEERAAKILRKWAIDE 561


>gi|222149996|ref|YP_002550953.1| flagellar MS-ring protein [Agrobacterium vitis S4]
 gi|221736978|gb|ACM37941.1| flagellar M-ring protein [Agrobacterium vitis S4]
          Length = 568

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 281/559 (50%), Positives = 384/559 (68%), Gaps = 11/559 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M + +QLLQ FK+ +SLG T++  LA V +V + L + A FF+N P ++ LYV LE +DV
Sbjct: 7   MNLFNQLLQVFKNLSSLGPTKLWTLAGVGVVSVALVIGAAFFINKPAFETLYVGLEATDV 66

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           N+IS+AL+EA + F+   +G SI V + M GKAR+ LA +GLP+S+ N+GYELFD V S 
Sbjct: 67  NQISIALAEAGVGFQTGADGKSIQVQAGMTGKARLLLAERGLPNST-NAGYELFDNVGSL 125

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEIARTIQ I+GI AARVHIVMPD+G+FR+   +PTASVMIRA 
Sbjct: 126 GLTSFMQEVTRVRALEGEIARTIQQINGIAAARVHIVMPDVGNFRRGAQKPTASVMIRAG 185

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240
           + +  KSA +IRHLVA+AVP L++ DVT+LDSTG+LL + +       ++L + Q++Q E
Sbjct: 186 SDAGRKSAASIRHLVASAVPGLEIDDVTILDSTGQLLASGDETGGAANRNLGVAQSVQQE 245

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           IE NI+KALA FLG+DNFRS+V A+LN D QQI+E VYDP+SKVERS R +K+AQ+S+  
Sbjct: 246 IESNIDKALAPFLGMDNFRSSVTAQLNTDQQQIQETVYDPESKVERSTRTTKEAQKSQQR 305

Query: 301 QPESAVTVEQNMPHVSDRKVPL-PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           Q ++A TVEQN+P  + +     P S +  DKKEEQ+NYEIN+K+IAT  + Y L++LS+
Sbjct: 306 QSDTAATVEQNIPQAAPQAGGAGPESSDQQDKKEEQTNYEINSKTIATVKNGYTLDKLSV 365

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AVVVNK R+  ++G   DQ KID+YLAE+ KIV +A G++ +RGD +T+T+MDFLENQL 
Sbjct: 366 AVVVNKQRIATMVGEPVDQAKIDAYLAEMQKIVKSAAGLDDKRGDVVTLTAMDFLENQLL 425

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
           +        M+ILSR+ A +IN+L FL    LV ++G+  + R          E G  ++
Sbjct: 426 SEAPTGPGVMEILSRNMAGIINSLAFLAVAFLVVWMGIRPMVRSMGGGGTAALEGGSDAV 485

Query: 480 --LSPPPISSAVTTGLMP------NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
             L  P  S  +  G           +   DS++ D+ +   +     N  V +  + RL
Sbjct: 486 AGLELPDFSPGLDAGAGGGLMDGFGSDFGFDSAD-DVLALDNDPNGGFNRRVKEGPERRL 544

Query: 532 LHMIEINEERFAKILRKWA 550
             M+EI+EER AKILRKWA
Sbjct: 545 ARMVEISEERAAKILRKWA 563


>gi|325291912|ref|YP_004277776.1| flagellar MS-ring protein [Agrobacterium sp. H13-3]
 gi|325059765|gb|ADY63456.1| flagellar MS-ring protein [Agrobacterium sp. H13-3]
          Length = 560

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 272/558 (48%), Positives = 393/558 (70%), Gaps = 11/558 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M +L+Q+ Q  K+  +LG+TR+L+L  V ++ + + +AA  +VN P Y+ LYV LE SD+
Sbjct: 1   MNLLNQIPQVLKNFAALGQTRLLMLGGVGILSMAIILAAALYVNRPAYETLYVGLEKSDL 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           N+IS+AL+EA +DF++  +G+S+ VP  +  KAR+ LA +GLP S+ N+GYELFD V S 
Sbjct: 61  NKISIALAEAGLDFQVGTDGASLQVPVGLTSKARLLLAERGLPDSA-NAGYELFDNVGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEI+R+IQ I GI AARVHIVMPD+G+FR+   +PTASVMIRA 
Sbjct: 120 GLTSFMQEVTRVRALEGEISRSIQQIDGIAAARVHIVMPDVGNFRRGEQKPTASVMIRAN 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239
             +  K++ +IRHLVA+AVP L++ DVT+LDSTG+LL + +++    + +SL++ Q +Q 
Sbjct: 180 ATAGRKASASIRHLVASAVPGLEVDDVTLLDSTGQLLASGDDVTNAAMNRSLTLAQNVQQ 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           EI  NI+KALA FLG+DNFRS+V A+LN D++QI+E VYDP+S+VERS+R  K+ Q+S+ 
Sbjct: 240 EITTNIDKALAPFLGMDNFRSSVTAQLNTDSRQIQETVYDPESRVERSVRTVKEDQKSQE 299

Query: 300 SQPESAVTVEQNMPHVSDR-KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
           +QP++A TVEQN+P  + +     P+S + + KKEEQ+NYEIN+K++AT  + Y +E++S
Sbjct: 300 TQPDTAATVEQNVPQAAPQGGAGGPQSSDQSAKKEEQTNYEINSKTVATVKNGYTVEKIS 359

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           +AVVVNKGR+ +++G   DQ KID+YLAE+ KIV++A G++S RGD +T+T+MDFLE QL
Sbjct: 360 VAVVVNKGRIAKMVGEPVDQAKIDAYLAEMQKIVTSAAGVSSDRGDIVTLTAMDFLETQL 419

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG----EV 474
            +        M++LSR+ A +IN+L F+    LV +LG+  L R    + A  G    E 
Sbjct: 420 LDEAASGPGIMEVLSRNSAGIINSLAFVAVAFLVVWLGVRPLVRTVTGNGAAAGQISQET 479

Query: 475 GGKSILSPPPISSAVTTGLMP--NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
            G  +    P   A   GLM     +   DS++ D+ +   + +   N  V +  + RL 
Sbjct: 480 AGLELPDFSPGMDAGAGGLMEGFGADFGFDSTD-DLLAGG-DSEGTFNRRVREGPERRLS 537

Query: 533 HMIEINEERFAKILRKWA 550
            M+EI+EER AKILRKWA
Sbjct: 538 RMVEISEERAAKILRKWA 555


>gi|222084850|ref|YP_002543379.1| flagellar M-ring protein [Agrobacterium radiobacter K84]
 gi|221722298|gb|ACM25454.1| flagellar M-ring protein [Agrobacterium radiobacter K84]
          Length = 559

 Score =  522 bits (1345), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 276/567 (48%), Positives = 395/567 (69%), Gaps = 30/567 (5%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M +L+QL+  F++  +LGRTR+L LA V ++ + L + A  +VN P  + LYV L+ +D+
Sbjct: 1   MNLLNQLVPLFRNLQNLGRTRLLTLAGVGILSVALVLFAALYVNKPAQETLYVGLDATDL 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           N+IS+AL+EA I+F++  +G+S++VP+ M GKAR  LA +GLP+S+ N+GYELFD V S 
Sbjct: 61  NQISIALAEAKINFQVGADGTSLTVPTGMTGKARALLAERGLPNST-NAGYELFDNVGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEI RTI SISGI AARVHIVM D+G+FRK   +PTASVMIRA 
Sbjct: 120 GLTSFMQEVTRVRALEGEIGRTITSISGISAARVHIVMQDVGNFRKADQKPTASVMIRAN 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQH 239
             +  K+A+AIRHLVA+AVP L++ DVT+LDSTG+LL + + + N  L ++L IVQ +Q 
Sbjct: 180 AEAARKAAQAIRHLVASAVPGLEVDDVTILDSTGQLLASGDDQSNGALNRNLGIVQNVQG 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           EI  NI+KALA FLG+DNFRS+V A+LN D+QQ++E  YDP+SKVERS+R +K+AQ+S+ 
Sbjct: 240 EIASNIDKALAPFLGMDNFRSSVTAQLNTDSQQVQETTYDPESKVERSVRTTKEAQKSQQ 299

Query: 300 SQPESAVTVEQNMPHVSDRKVP-LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
            Q ++A TVEQN+P  + +     P S + TDK+EEQ+NYEIN+K+ AT  ++Y++E+LS
Sbjct: 300 RQSDTAATVEQNIPQAAPQAGGNGPTSNDQTDKREEQTNYEINSKTTATVRNSYRIEKLS 359

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           +AVVVN+GR+ +++G+ AD  K+D+Y+AE+ KIV+ A G++  RGD +T+ +MDFL+ QL
Sbjct: 360 VAVVVNRGRIAQMVGQPADPAKVDAYIAEMQKIVATAAGLDPSRGDVVTVNAMDFLDTQL 419

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL-RRLHN------------ 465
            +     ++ MD+LSR+ A +IN+L F+   +L+ +LG   L R L              
Sbjct: 420 LDDNASGLNIMDVLSRNIAGIINSLAFVAVAVLIIWLGFRPLIRSLGGGANGTALPDAAG 479

Query: 466 --IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
             + D   G VGG          +A+  G     +   DS++ D+ +   +  S  N  V
Sbjct: 480 LELPDFAPGAVGGP--------GAALMDGF--GSDFGFDSTD-DLLTMGED-NSTFNRRV 527

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWA 550
            +  + RL  M+EI+EER AKILRKWA
Sbjct: 528 KEGPERRLSRMVEISEERAAKILRKWA 554


>gi|15964399|ref|NP_384752.1| flagellar MS-ring protein [Sinorhizobium meliloti 1021]
 gi|307311541|ref|ZP_07591182.1| flagellar M-ring protein FliF [Sinorhizobium meliloti BL225C]
 gi|307318896|ref|ZP_07598327.1| flagellar M-ring protein FliF [Sinorhizobium meliloti AK83]
 gi|17380368|sp|O54239|FLIF_RHIME RecName: Full=Flagellar M-ring protein
 gi|15073576|emb|CAC45218.1| Flagellar M-ring transmembrane protein [Sinorhizobium meliloti
           1021]
 gi|306895310|gb|EFN26065.1| flagellar M-ring protein FliF [Sinorhizobium meliloti AK83]
 gi|306899558|gb|EFN30187.1| flagellar M-ring protein FliF [Sinorhizobium meliloti BL225C]
          Length = 557

 Score =  522 bits (1345), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 277/556 (49%), Positives = 372/556 (66%), Gaps = 10/556 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M + DQ   F K+ ++LG+ +++ LA   +V I   + A  +VN P ++ LYV LE SDV
Sbjct: 1   MNLFDQFSTFTKNLSNLGQGKLIALAVAGVVAIGFVLGAGIYVNRPSFETLYVGLERSDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +IS+AL+EAN+DF +  +G SI VP  M GKAR+ LA +GLPSS+ N+GYELFD V S 
Sbjct: 61  TQISIALAEANVDFEVGTDGGSIQVPVGMTGKARLLLAERGLPSSA-NAGYELFDNVGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEIARTIQ ISGI AARVHIVMP+ GSFRK    PTASVMIRA 
Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQQISGIAAARVHIVMPERGSFRKAEQTPTASVMIRAS 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQH 239
                 +A +IRHLVA++VP LD+ DVTVLDSTG+LL + +   N  L +SL +VQ +Q 
Sbjct: 180 ATVGRSAASSIRHLVASSVPGLDVDDVTVLDSTGQLLASGDDPSNSALNQSLGVVQNVQS 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           ++E  I+ ALA FLG+DNFR++V A LN D QQI+E V+DP+S+VERS R+ K+ Q+S  
Sbjct: 240 DLEKKIDNALAPFLGMDNFRTSVTARLNTDAQQIQETVFDPESRVERSTRVIKEEQKSSQ 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
            QP++A TV+QN+P  + R     +S +  +KKEEQ+NYEIN+K+IAT  ++Y +ERLSI
Sbjct: 300 QQPDNAATVQQNVPQAAPRGGAGQQSSDEAEKKEEQTNYEINSKTIATVKNSYSIERLSI 359

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AVVVN+GRL  + G  ADQ KID+YL E+ KIVS+A GI+  RGD +T+ +MDF+E QL 
Sbjct: 360 AVVVNRGRLAAMAGEPADQAKIDAYLQEMQKIVSSAAGIDPGRGDVVTLNAMDFVETQLL 419

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL-RRLHNIDDAKK--GEVGG 476
           +        M++L+R+   +INAL F+    LV + G+  L R+L     A K  GE  G
Sbjct: 420 DQAVPGPGIMEMLTRNLGGIINALAFVAVAFLVVWFGMRPLARQLGFGGQAGKLEGEAAG 479

Query: 477 KSILSPPPISSAVTTGLMP--NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
             +    P  +     LM     +   D  + D+ +     ++  N  V +  + RL  M
Sbjct: 480 LELPDFSPAGAGAGGALMEGFGSDFGFDGGD-DLLNLGD--EAGFNRRVKEGPERRLARM 536

Query: 535 IEINEERFAKILRKWA 550
           +EI+EER AKILRKWA
Sbjct: 537 VEISEERAAKILRKWA 552


>gi|15887871|ref|NP_353552.1| flagellar MS-ring protein [Agrobacterium tumefaciens str. C58]
 gi|15155457|gb|AAK86337.1| flagellar M-ring protein [Agrobacterium tumefaciens str. C58]
          Length = 566

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 269/558 (48%), Positives = 391/558 (70%), Gaps = 11/558 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M +L+Q+ Q  K+  +LG+TR+L+L  V ++ + + +AA  +VN P Y+ LYV LE SD+
Sbjct: 7   MNLLNQIPQVLKNVAALGQTRLLMLGGVGVLSMAIILAAALYVNRPAYETLYVGLEKSDL 66

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           N+IS+AL+E+ +DF++  +GSS+ VP  +  KAR+ LA +GLP S+ N+GYELFD V S 
Sbjct: 67  NKISIALAESGLDFQVGTDGSSLQVPVGLTSKARLLLAERGLPDSA-NAGYELFDNVGSL 125

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEI R+IQ I G+ AARVHIV+PD+G+FR+   +PTASVMIRA 
Sbjct: 126 GLTSFMQEVTRVRALEGEIGRSIQQIDGVSAARVHIVLPDVGNFRRGEQKPTASVMIRAS 185

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239
             +  K++ +IRHLVA+AVP L++ DVT+LDSTG+LL + +++    + +SL++ Q +Q 
Sbjct: 186 ASAGRKASASIRHLVASAVPGLEVDDVTLLDSTGQLLASGDDVTNAAMNRSLTLAQNVQQ 245

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           EI  NI+KALA FLG+DNFRS+V A++N D++Q++E VYDP+S+VERS+R  K+ Q+S+ 
Sbjct: 246 EITTNIDKALAPFLGIDNFRSSVTAQINTDSRQVQETVYDPESRVERSVRTVKEDQKSQE 305

Query: 300 SQPESAVTVEQNM-PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
           +QP++A TVEQN+           P+S + + KKEEQ+NYEIN+K++AT  + Y LE++S
Sbjct: 306 TQPDTAATVEQNVPQAAPQGGGGGPQSSDQSAKKEEQTNYEINSKTVATVKNGYTLEKIS 365

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           +AVVVNKGR+ +++G  ADQ KID+YLAE+ KIV++A GI+S RGD +T+T+MDFLE QL
Sbjct: 366 VAVVVNKGRIAKMVGEPADQAKIDAYLAEMQKIVTSAAGISSDRGDIVTLTAMDFLETQL 425

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
            +        M++LSR+ A +IN+L F+    LV +LG+  L R    + +   ++  +S
Sbjct: 426 LDEAASGPGVMEVLSRNSAGIINSLAFVAVAFLVVWLGVRPLVRTVTANGSAAAQLSQES 485

Query: 479 I-LSPP---PISSAVTTGLMP--NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
             L  P   P   A   GLM     +   DS++ D+ +     +   N  V +  + RL 
Sbjct: 486 AGLELPDFSPGMEAGAGGLMEGFGADFGFDSTD-DLLAGGDG-EGTFNRRVREGPERRLS 543

Query: 533 HMIEINEERFAKILRKWA 550
            M+EI+EER AKILRKWA
Sbjct: 544 RMVEISEERAAKILRKWA 561


>gi|227820842|ref|YP_002824812.1| flagellar MS-ring protein [Sinorhizobium fredii NGR234]
 gi|227339841|gb|ACP24059.1| flagellar M-ring protein FliF [Sinorhizobium fredii NGR234]
          Length = 559

 Score =  518 bits (1334), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 274/557 (49%), Positives = 378/557 (67%), Gaps = 10/557 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M + DQ   F K+ ++LG+++++ LA   +V I   + A  +VN P Y+ LYV LE SDV
Sbjct: 1   MNLFDQFSTFTKNLSNLGQSKLIALAVAGIVAIGFVLGAAIYVNKPAYETLYVGLERSDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +IS+AL+EAN+DF +  +G SI VP  M GKAR+ LA +GLPSS+ N+GYELFD V S 
Sbjct: 61  TQISIALAEANLDFEVGSDGGSIQVPVGMTGKARLLLAERGLPSSA-NAGYELFDNVGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEIARTIQ ISGI AARVHIVMP+ GSFRK    PTASVMIRA 
Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQQISGIAAARVHIVMPERGSFRKAEQTPTASVMIRAS 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQH 239
                 +A +IRHLVA++VP LD+ DVT+LDSTG+LL + +   N  L +SL +VQ +Q 
Sbjct: 180 ATVGRGAASSIRHLVASSVPGLDIDDVTILDSTGQLLASGDDPANSALNQSLGVVQNVQT 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           ++E  I+ ALA FLG+DNFR++V A LN D QQI+E V+DP+S+VERS R+ K+ Q+S  
Sbjct: 240 DLEKKIDNALAPFLGMDNFRTSVTASLNTDAQQIQETVFDPESRVERSTRVIKEEQKSSQ 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
            QP++A TV+QN+P  + R     +S +   KKEEQ+NYEIN+K+IAT  ++Y +ERLSI
Sbjct: 300 QQPDNAATVQQNVPQAAPRGGAGQQSNDEAAKKEEQTNYEINSKTIATVKNSYSIERLSI 359

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AVVVN+GRL  ++G  ADQ KID+YL ++ KIV++A G+++ RGD +T+ +MDF+E QL 
Sbjct: 360 AVVVNRGRLAAMVGEGADQAKIDAYLQDMQKIVASAAGVDTNRGDVVTLNAMDFVETQLL 419

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK---KGEVGG 476
           +        M++L+R+   +IN+L F++   LV +LG+  L R           +GE  G
Sbjct: 420 DQAVAGPGVMEMLTRNLGGIINSLAFILVAFLVVWLGMRPLARQMGFGGQSGHLEGEGAG 479

Query: 477 KSILS-PPPISSAVTTGLMP--NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
             +    P  +SA    LM     +   DS++ D+ + S +  +  N  V +  + RL  
Sbjct: 480 LELPDFSPAGASAAGGALMEGFGSDFGFDSTD-DLLNIS-DEGNGFNRRVKEGPERRLAR 537

Query: 534 MIEINEERFAKILRKWA 550
           M+EI+EER AKILRKW+
Sbjct: 538 MVEISEERAAKILRKWS 554


>gi|2916780|emb|CAA11947.1| flagellar basal-body MS-ring protein [Sinorhizobium meliloti]
          Length = 557

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 275/556 (49%), Positives = 370/556 (66%), Gaps = 10/556 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M + DQ   F K+ ++LG+ +++ LA   +V I   + A  +VN   ++ LYV LE SDV
Sbjct: 1   MNLFDQFSTFTKNLSNLGQGKLIALAVAGVVAIGFVLGAGIYVNRRSFETLYVGLERSDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +IS+AL+EAN+DF +  +G SI VP  M GKAR+ LA +GLPSS+ N+GYELFD V S 
Sbjct: 61  TQISIALAEANVDFEVGTDGGSIQVPVGMTGKARLLLAERGLPSSA-NAGYELFDNVGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEI RTIQ ISGI AARVHIVMP+ GSFRK    PTASVMIRA 
Sbjct: 120 GLTSFMQEVTRVRALEGEIGRTIQQISGIAAARVHIVMPERGSFRKAEQTPTASVMIRAS 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQH 239
                 +A +IRHLVA++VP LD+ DVTVLDSTG+LL + +   N  L +SL +VQ +Q 
Sbjct: 180 ATVGRSAASSIRHLVASSVPGLDVDDVTVLDSTGQLLASGDDPSNSALNQSLGVVQNVQS 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           ++E  I+ ALA FLG+DNFR++V A LN D QQI+E V+DP+S+VERS R+ K+ Q+S  
Sbjct: 240 DLEKKIDNALAPFLGMDNFRTSVTARLNTDAQQIQETVFDPESRVERSTRVIKEEQKSSQ 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
            QP++A TV+QN+P  + R     +S +  +KKEEQ+NYEIN+K+IAT  ++Y +ERLSI
Sbjct: 300 QQPDNAATVQQNVPQAAPRGGAGQQSSDEAEKKEEQTNYEINSKTIATVKNSYSIERLSI 359

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AVVVN+GRL  + G  ADQ KID+YL E+ KIVS+A GI+  RGD +T+ +MDF+E QL 
Sbjct: 360 AVVVNRGRLAAMAGEPADQAKIDAYLQEMQKIVSSAAGIDPGRGDVVTLNAMDFVETQLL 419

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL-RRLHNIDDAKK--GEVGG 476
           +        M++L+R+   +INAL F+    LV + G+  L R+L     A K  GE  G
Sbjct: 420 DQAVPGPGIMEMLTRNLGGIINALAFVAVAFLVVWFGMRPLARQLGFGGQAGKLEGEAAG 479

Query: 477 KSILSPPPISSAVTTGLMP--NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
             +    P  +     LM     +   D  + D+ +     ++  N  V +  + RL  M
Sbjct: 480 LELPDFSPAGAGAGGALMEGFGSDFGFDGGD-DLLNLGD--EAGFNRRVKEGPERRLARM 536

Query: 535 IEINEERFAKILRKWA 550
           +EI+EER AKILRKWA
Sbjct: 537 VEISEERAAKILRKWA 552


>gi|150395469|ref|YP_001325936.1| flagellar MS-ring protein [Sinorhizobium medicae WSM419]
 gi|150026984|gb|ABR59101.1| flagellar M-ring protein FliF [Sinorhizobium medicae WSM419]
          Length = 557

 Score =  515 bits (1327), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 274/557 (49%), Positives = 371/557 (66%), Gaps = 12/557 (2%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M + DQ   F K+ ++LG+ +++ LA   +V I   + A  +VN P ++ LYV LE SDV
Sbjct: 1   MNLFDQFSTFTKNLSNLGQGKLIALAVAGIVAIGFVLGAGVYVNRPSFETLYVGLERSDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +IS+AL+EAN+DF +  +G SI VP  M GKAR+ LA +GLPSS+ N+GYELFD V S 
Sbjct: 61  TQISIALAEANVDFEVGTDGGSIQVPVGMTGKARLLLAERGLPSSA-NAGYELFDNVGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEIARTIQ ISGI AARVHIVMP+ GSFRK    PTASVMIRA 
Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQQISGIAAARVHIVMPERGSFRKAEQTPTASVMIRA- 178

Query: 181 NPSVYKSAEA-IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQ 238
           + +V +SA A IRHLVA++VP LD+ DVTVLDSTG+LL + +   N  L +SL +VQ +Q
Sbjct: 179 SATVGRSAAASIRHLVASSVPGLDVDDVTVLDSTGQLLASGDDPANSALNQSLGVVQNVQ 238

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
            ++E  I+ ALA FLG+DNFR++V A LN D QQI+E V+DP+S+VERS R+ K+ Q+S 
Sbjct: 239 TDLEKKIDNALAPFLGMDNFRTSVTARLNTDAQQIQETVFDPESRVERSTRVIKEEQKSS 298

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
             QP++A TV+QN+P  +       +S +   KKEEQ+NYEIN+K+IAT  ++Y +ERLS
Sbjct: 299 QQQPDNAATVQQNVPQAAPTGGAGQQSSDEAAKKEEQTNYEINSKTIATVKNSYSIERLS 358

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           IAVVVN+GRL  + G  ADQ KID+YL ++ KIV++A GI+  RGD +T+ +MDF+E QL
Sbjct: 359 IAVVVNRGRLAAMAGEPADQAKIDAYLVQMQKIVASAAGIDPGRGDVVTLNAMDFVETQL 418

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK---KGEVG 475
            +        M++L+R+   +INAL F+    LV + G+  L R            GE  
Sbjct: 419 LDQAVPGPGMMEVLTRNIGGIINALAFVAVAFLVVWFGMRPLARQMGFGGQSGQLAGEAA 478

Query: 476 GKSILSPPPISSAVTTGLMP--NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
           G  +    P ++     LM     +   D  + D+ +     ++  N  V +  + RL  
Sbjct: 479 GLELPDFSPAAAGAGGALMEGFGSDFGFDGGD-DLLNLGD--EAGFNRRVKEGPERRLAR 535

Query: 534 MIEINEERFAKILRKWA 550
           M+EI+EER AKILRKWA
Sbjct: 536 MVEISEERAAKILRKWA 552


>gi|163757999|ref|ZP_02165087.1| flagellar M-ring protein [Hoeflea phototrophica DFL-43]
 gi|162284288|gb|EDQ34571.1| flagellar M-ring protein [Hoeflea phototrophica DFL-43]
          Length = 560

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 252/561 (44%), Positives = 366/561 (65%), Gaps = 11/561 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M++L+QL Q  K+  SLG+ R+L L  V    + L +AA  F+N P  + LY+ L   D+
Sbjct: 1   MSLLNQLSQIGKNLASLGQARMLTLGGVGAASVALIIAAALFLNKPARETLYIGLSGEDM 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +IS+ L+E+NIDF    +G+SI+VP+ M  +AR+ LA +GLPSS++ +GYELFDKV S 
Sbjct: 61  TQISLVLAESNIDFASGLDGNSITVPAGMTSRARMLLAERGLPSSNT-AGYELFDKVGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEIARTIQSI+GI AARVH+VM D G+FR+   +P+ASVM+R  
Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQSINGISAARVHLVMADRGNFRRGEQQPSASVMVRTG 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239
                ++A +IRHLVA++VP L++ +VTVLD+TG+LL T ++   + L +SLSIVQ +Q+
Sbjct: 180 TNLAPRTANSIRHLVASSVPGLNVDEVTVLDATGQLLATGDDFSNSNLNRSLSIVQLVQN 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           E+E NI KALA FLG++NFR++V A +N D+QQ++E ++DP+S+VERS R++++ Q S  
Sbjct: 240 EVETNIEKALAPFLGIENFRASVTATVNTDSQQVQETIFDPESRVERSTRVTRENQTSNQ 299

Query: 300 SQPESAVTVEQNMPH--VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
           S  ++  TVEQN+P    +      P+S E  ++KEEQ+NYEIN+K I+T  ++Y +E L
Sbjct: 300 SATDTPATVEQNIPDQGPAAGGAAGPQSSELAERKEEQTNYEINSKVISTVRNSYTVEGL 359

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           S+AVVVN+ R+ ++ G +  + +  ++LAE+  +V+ A G++  RGD   IT MDF+ ++
Sbjct: 360 SVAVVVNRARIADMYGGAPTEEQTAAFLAEVQTLVNLAAGVDDERGDRANITVMDFMASE 419

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
           L  +   Q  F D L  H  T+INA+ F+   +L+   G   L  L     A++ E    
Sbjct: 420 LLTADAAQGGFGDTLKTHIGTIINAIAFITVAVLLIMFGFRPL--LGAGKTAEQAEDAVD 477

Query: 478 SI-LSPPPISSAV--TTGLMPNDNIALD-SSNQDIFSHSRNLQS-RINSYVSKQSDLRLL 532
            I L  P  S A     G MP +    D    +D  S     +S   N  V +  + RL 
Sbjct: 478 DIGLELPDFSPAAMGGPGAMPMEGFGADFGFGEDGDSELEMEESGSFNRRVKEGPERRLA 537

Query: 533 HMIEINEERFAKILRKWARSE 553
            M+EINEER AKILR+W+  E
Sbjct: 538 RMVEINEERAAKILRQWSSGE 558


>gi|110632647|ref|YP_672855.1| flagellar MS-ring protein [Mesorhizobium sp. BNC1]
 gi|110283631|gb|ABG61690.1| flagellar M-ring protein FliF [Chelativorans sp. BNC1]
          Length = 545

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 232/556 (41%), Positives = 349/556 (62%), Gaps = 21/556 (3%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +QL    ++  +LG  R+ ++  V+ + + +      ++N P Y+ LYV LE SDVN+I 
Sbjct: 3   EQLRTIVENLRALGPRRLAMMGGVLALTLAVVTGGAIYLNRPAYETLYVGLERSDVNQIG 62

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
           + L EA I F +  +G+++ VP+    +AR+ LA +GLPSS+ N+GYELFD V S GLT+
Sbjct: 63  LVLGEAGIRFDVVSDGTAVLVPTGKTAEARMLLAEKGLPSSA-NAGYELFDTVGSLGLTT 121

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           FMQE+TRVRALEGEIARTI+SI+GI AARVHIVMP+ G+FR+ G  P+ASV+IR      
Sbjct: 122 FMQEVTRVRALEGEIARTIRSIAGIRAARVHIVMPERGNFRREGQEPSASVVIRTSGIDG 181

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQAIQHEIEM 243
              A +IR+LVAAAVP L    VTVLDS+G LL A ++   N   +S+ I + ++ ++E 
Sbjct: 182 AAKAASIRYLVAAAVPGLSAEKVTVLDSSGMLLAAGDDPANNTAQRSIGIERTVEAQVEE 241

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           NI +ALA +LG DNFR++V AE+N DT+Q+ E+++DPDS+VERS+++ + A  +      
Sbjct: 242 NIRRALAPYLGPDNFRASVKAEVNTDTRQVEEVIFDPDSRVERSVQIVRTADSATRETAA 301

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
           +  TV QN+P        LPRS E ++++EE +NYE+NTK IAT+ + Y++ RLSIAVVV
Sbjct: 302 TPTTVLQNLPQEEPAPAELPRSSEESERREETTNYELNTKRIATSSNGYQVTRLSIAVVV 361

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           N+GRL  +LG +A    + + + EI  +V++A G+N  RGD + + +++F++  L     
Sbjct: 362 NEGRLAAILGDNAAPDALQTRIREIETVVASAAGLNETRGDVLNVAAVEFVDG-LDGVEM 420

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH----ALRRLHNIDDAKKGEVGGKSI 479
            +   +  L RH  T+INAL F++    +T+ GL     AL R   I+ +  GE      
Sbjct: 421 AEPGPLAALGRHSGTMINALAFVLAAFFITWFGLRPLATALTRGPEIEASAAGE------ 474

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
                I +    G   ++ +AL + N    S   N + ++    + Q+   L  M+++NE
Sbjct: 475 ----EIQALSQEGA--DERLALTAGNGVQSSEEANDEPQLKIKPAPQA--LLARMVDLNE 526

Query: 540 ERFAKILRKWARSEIE 555
           ER A ILRKWAR+E+E
Sbjct: 527 ERTADILRKWARAEVE 542


>gi|319781672|ref|YP_004141148.1| flagellar M-ring protein FliF [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167560|gb|ADV11098.1| flagellar M-ring protein FliF [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 548

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 229/556 (41%), Positives = 336/556 (60%), Gaps = 40/556 (7%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
             G  R+ +LA + ++ + +   A  ++N P YD LYV L+ +DVN+I + L EA I F 
Sbjct: 14  GFGVKRLAMLAGIAVLVMGVIGIASVYLNRPAYDTLYVGLDRADVNQIGLVLGEAGIGFD 73

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135
           +  +G+S+ VP+    +AR+ LA +GLP+S+ N+GYELFD V S GLTSFMQ+ITRVRAL
Sbjct: 74  VGADGTSVLVPAGTTAQARMLLAEKGLPTSA-NAGYELFDNVGSLGLTSFMQQITRVRAL 132

Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLV 195
           EGEIARTIQSISGI AARVHIVM +  +FR+   +P+ASV+IR       KSA +IRHLV
Sbjct: 133 EGEIARTIQSISGIKAARVHIVMSERANFRRDEQQPSASVVIRYAGIDAEKSAMSIRHLV 192

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERNI-LGKSLSIVQAIQHEIEMNINKALAAFLG 254
           AAAVP L    VTVLDS+G LL A +   N    ++L + Q ++ +I  NI +AL A+LG
Sbjct: 193 AAAVPGLSADKVTVLDSSGNLLAAGDDPSNTSAARTLGVEQTVEAQIGDNIRRALTAYLG 252

Query: 255 VDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPH 314
            DNFR++V AE+N DT+Q  E ++DP+S+VERS++  +  + +   Q  +  +VEQN+P 
Sbjct: 253 PDNFRASVKAEVNTDTRQTEETIFDPNSRVERSVQSVRANENNNQKQASTPASVEQNLPE 312

Query: 315 VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR 374
                   P+S    D++EE +NYEIN+K IAT  + Y + ++SIAVVVN+ RLT +LG+
Sbjct: 313 TQATATDGPQSSSQNDRREEITNYEINSKKIATVSNGYTVTKMSIAVVVNQQRLTTILGK 372

Query: 375 SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSR 434
            A   +I   +AEI K+V++ATG++ +RGD I +++++F++  L      Q   +D + +
Sbjct: 373 DATPEQIAKRVAEIQKMVTSATGLDEKRGDIIDVSAVEFIDG-LDGEAIPQAGMLDSIGQ 431

Query: 435 HFATVINALVFLVGTLLVTFLGLHALRRLH-----------NIDDAKKGEVGGKSILSPP 483
           H  T+INA  F+V   LV F GL  +               + DD ++      S+ +P 
Sbjct: 432 HAGTMINAGAFIVVVFLVAFFGLRPMAAALTAKAAPALAGPSFDDVQR------SLPTPE 485

Query: 484 PISSA--VTTGLMPNDN---IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
            +++      G +P        LD   Q I    ++               RL  M+++N
Sbjct: 486 AMAATDNAAVGALPGTRPGPTPLDDLRQKIRPAPQD---------------RLARMVDLN 530

Query: 539 EERFAKILRKWARSEI 554
           EER A+ILRKWA  E+
Sbjct: 531 EERTAQILRKWASQEV 546


>gi|13472585|ref|NP_104152.1| flagellar MS-ring protein [Mesorhizobium loti MAFF303099]
 gi|14023331|dbj|BAB49938.1| flagellar basal-body MS-ring protein; FliF [Mesorhizobium loti
           MAFF303099]
          Length = 549

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 231/553 (41%), Positives = 333/553 (60%), Gaps = 33/553 (5%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
             G  R+ +LA + ++ + +   A  ++N P YD LYV L+ +DVN+I + L EA I F 
Sbjct: 14  GFGVKRLAMLAGIAVLVMGVIGIASVYLNRPAYDTLYVGLDRADVNQIGLVLGEAGIGFD 73

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135
           +  +G+S+ VP+    +AR+ LA +GLP+S+ N+GYELFD V + GLTSFMQ+ITRVRAL
Sbjct: 74  VGSDGTSVLVPAGTTAQARMLLAEKGLPTSA-NAGYELFDNVGAMGLTSFMQQITRVRAL 132

Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLV 195
           EGEIARTIQSISGI AARVHIVM +  +FR+   +P+ASV+IR       KSA++IRHLV
Sbjct: 133 EGEIARTIQSISGIKAARVHIVMSERANFRRDEQQPSASVVIRYAGIDAEKSAQSIRHLV 192

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERNI-LGKSLSIVQAIQHEIEMNINKALAAFLG 254
           AAAVP L    VTVLDS G LL A +   N    ++L + Q ++ +I  NI +AL  +LG
Sbjct: 193 AAAVPGLSADKVTVLDSNGNLLAAGDDPSNTSAARTLGVEQTVEAQIGDNIRRALTPYLG 252

Query: 255 VDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPH 314
            DNFR++V AE+N DT+Q  E ++DP+S+VERS++  +  + S   Q  +  +VEQN+P 
Sbjct: 253 PDNFRASVKAEVNTDTRQTEETIFDPNSRVERSVQSVRANENSNQKQASTPASVEQNLPE 312

Query: 315 VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR 374
                   P++    D+KEE +NYEIN+K IAT  + Y + ++SIAVVVN+ RL  +LG+
Sbjct: 313 TQATSTEGPQTTSANDRKEEITNYEINSKKIATVSNGYTVTKMSIAVVVNQDRLKTILGK 372

Query: 375 SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSR 434
            A   +I   +AEI K+V++ATG++ +RGD I +++++F++  L      Q   +D + +
Sbjct: 373 DATPEQIAKRVAEIQKMVTSATGLDDKRGDVIDVSAVEFIDG-LDGEAIPQAGMLDSIGQ 431

Query: 435 HFATVINALVFLVGTLLVTFLGLHAL------RRLHNIDDAKKGEVGGKSILSPPPISSA 488
           H  T+INA  F+V   LV F GL  +      R    +      EV  +S+ +P   +SA
Sbjct: 432 HAGTLINAGAFIVVVFLVAFFGLRPMAAALTARATPALSGPNFDEV-QRSLPTPEAAASA 490

Query: 489 VTT-------GLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
                     G  P  N  LD   Q I    +                RL  M+++NEER
Sbjct: 491 DAGAAIGALPGSRPGTN-PLDDLRQKIRPAPQE---------------RLARMVDLNEER 534

Query: 542 FAKILRKWARSEI 554
            A+ILRKWA  E+
Sbjct: 535 TAQILRKWAAQEV 547


>gi|260466610|ref|ZP_05812798.1| flagellar M-ring protein FliF [Mesorhizobium opportunistum WSM2075]
 gi|259029616|gb|EEW30904.1| flagellar M-ring protein FliF [Mesorhizobium opportunistum WSM2075]
          Length = 549

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 226/543 (41%), Positives = 326/543 (60%), Gaps = 13/543 (2%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
             G  R+ +LA + ++ + +   A  ++N P YD LYV L+ SDVN+I + L EA I F 
Sbjct: 14  GFGVKRLAMLAGIAVLVMGVIGIASVYLNRPAYDTLYVGLDRSDVNQIGLVLGEAGIGFD 73

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135
           +  +G+S+ VP+    +AR+ LA +GLP+S+ N+GYELFD V + GLTSFMQ+ITRVRAL
Sbjct: 74  VGADGTSVLVPAGTTAQARMLLAEKGLPTSA-NAGYELFDNVGAMGLTSFMQQITRVRAL 132

Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLV 195
           EGEIARTIQSI+GI AARVHIVM +  +FR+   +P+ASV+IR       KSA +IRHLV
Sbjct: 133 EGEIARTIQSIAGIKAARVHIVMSERANFRRDEQQPSASVVIRYAGIDAEKSAMSIRHLV 192

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERNI-LGKSLSIVQAIQHEIEMNINKALAAFLG 254
           AAAVP L    VTVLDS G LL A +   N    ++L + Q ++ +I  NI +AL  +LG
Sbjct: 193 AAAVPGLSADKVTVLDSNGNLLAAGDDPSNTSAARTLGVEQTVEAQIGDNIRRALTPYLG 252

Query: 255 VDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPH 314
            DNFR++V AE+N DT+Q  E ++DP+S+VERS++  +  + S   Q  +  +VEQN+P 
Sbjct: 253 PDNFRASVKAEVNTDTRQTEETIFDPNSRVERSVQSVRANENSNQKQASTPASVEQNLPE 312

Query: 315 VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR 374
                   P++    D+KEE +NYEIN+K IAT  + Y + ++SIAVVVN+ RL  +LG+
Sbjct: 313 TQAASTEGPQTSSANDRKEEITNYEINSKKIATVSNGYTVTKMSIAVVVNQDRLKTILGK 372

Query: 375 SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSR 434
            A   +I   +AEI K+VS+ATG + +RGD I +++++F++  L      Q   +D + +
Sbjct: 373 DATPEQIAKRVAEIQKMVSSATGFDDKRGDVIDVSAVEFIDG-LDGEAVPQAGMLDSIGQ 431

Query: 435 HFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLM 494
           H  T+INA  F+V   LV F GL  +             + G       P    V   L 
Sbjct: 432 HAGTLINAGAFIVVVFLVAFFGLRPMAAALTAKATPTPAISG-------PNFDEVQRSLP 484

Query: 495 PNDNIALDSSNQDIFSHSRNLQSRINSYVSK---QSDLRLLHMIEINEERFAKILRKWAR 551
             +  A  ++       +R   + ++    K       RL  M++INEER A+ILRKWA 
Sbjct: 485 TPEAAASANAAVGALPSARPGATPLDDLRQKIRPAPQERLARMVDINEERTAQILRKWAA 544

Query: 552 SEI 554
            E+
Sbjct: 545 QEV 547


>gi|319409176|emb|CBI82820.1| Flagellar M-ring protein [Bartonella schoenbuchensis R1]
          Length = 555

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 225/558 (40%), Positives = 338/558 (60%), Gaps = 25/558 (4%)

Query: 3   ILDQLLQFFKS-GTSLGRTRILILASVILVPIMLF---MAARFFVNSPHYDNLYVKLEVS 58
           +LD+LL F  S G +L +  +  L ++ LV I LF   + + F++  P Y+ LY+ L   
Sbjct: 1   MLDKLLAFLSSSGQALQKLGVKRLVALGLVGITLFGTILFSSFYLTRPSYETLYIGLSRD 60

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
           DVNR+ VAL E  I F +S +GSSI VP     KAR+ LA +GLP+S+ N+GYELFD + 
Sbjct: 61  DVNRMGVALGETGIAFDVSSDGSSIQVPVGQAEKARMFLAEKGLPTSN-NAGYELFDNMG 119

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178
           S GLTSFMQEITR RALEGEIARTIQ + G+ AARVHIV+PD GSFRK   +PTASV+IR
Sbjct: 120 SLGLTSFMQEITRQRALEGEIARTIQVVQGVKAARVHIVLPDKGSFRKANQKPTASVVIR 179

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIV-QAI 237
                  +SA++IR LV+AAVP+L+   VTV+D+ G+LL +     N     ++++ Q +
Sbjct: 180 TDGGFSAESAQSIRQLVSAAVPSLEASSVTVMDTRGQLLASGVDAANGASVRMALLEQQV 239

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
             +I+ NI K L  +LG+D+F+++V  +L+ + QQI E V+DP+S+V RS+R  +D   S
Sbjct: 240 ASQIDANIRKQLVPYLGLDHFQTSVQVDLDTNRQQINETVFDPESQVVRSVRSVRDQADS 299

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
           + S+   AV VEQN+P          RS +  D++EE +NYEIN+K I+T  D Y +++L
Sbjct: 300 QNSRNNDAVGVEQNIPQEEIANGGGERSTDKKDRREETTNYEINSKIISTVKDGYSVKKL 359

Query: 358 SIAVVVNKGRLTEVLGRSAD-QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           ++A+VV++ RL    G + D +  I+  +  I ++V+ A G++ +RGD I +T++DF+  
Sbjct: 360 AVAIVVDRARLALAKGNNGDSESFINDEINRIQQMVATAAGLDPKRGDVINVTAVDFMGY 419

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR-----LHNIDDAKK 471
              +   +Q      LS + +T +N L  +V  LL+ FLG+  L R        +D+ + 
Sbjct: 420 SDKDLTPMQTPIWKSLSPYLSTFVNGLALVVAVLLILFLGVRPLMREMREGQKALDNEQN 479

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
              G + +  P   + +   G       A D +  D+ S  R         V+ Q+  RL
Sbjct: 480 ALAGLQDV--PALENQSNINGEFGGIAGAKDDTLNDLRSRMR---------VAPQN--RL 526

Query: 532 LHMIEINEERFAKILRKW 549
             MIEI+E+RFA++LR+W
Sbjct: 527 EKMIEIDEQRFAEVLREW 544


>gi|319898649|ref|YP_004158742.1| flagellar M-ring protein [Bartonella clarridgeiae 73]
 gi|319402613|emb|CBI76158.1| Flagellar M-ring protein [Bartonella clarridgeiae 73]
          Length = 557

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 216/556 (38%), Positives = 337/556 (60%), Gaps = 18/556 (3%)

Query: 3   ILDQLLQFFKSGTS----LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           ++D+ L F  S  +    LG  R++ L  + L      + + F++  P Y+ LYV L   
Sbjct: 1   MIDKFLAFLSSSGNALHKLGAKRLIALGIIGLTLFGTILFSSFYLTRPVYETLYVGLSRD 60

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
           DVNR+ +AL E  I F +S +GS++ VP     +AR+ LA +GLP+S+ N+GYELFD + 
Sbjct: 61  DVNRMGMALGEVGIAFDVSADGSTVQVPVGQAEQARMFLAEKGLPTSN-NAGYELFDNMG 119

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178
           S GLTSFMQEITR RALEGEIARTIQ + G+ AARVHIV+PD GSFRK   +PTASV+IR
Sbjct: 120 SLGLTSFMQEITRQRALEGEIARTIQVVQGVKAARVHIVLPDKGSFRKANQKPTASVVIR 179

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL---SIVQ 235
                  +SA++IR LVAAAVP+L+   VTV+D+ G+LL +     N  G S+   S+ Q
Sbjct: 180 TNGGFAVESAQSIRQLVAAAVPSLEASSVTVMDTRGQLLASGVDAMN--GTSMMMASLEQ 237

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            +  +I+ NI K L  +LG+D+F+++V   L+ D +Q  E V+DP+S+V RS+R  +D  
Sbjct: 238 QVASQIDANIRKQLVPYLGLDHFQTSVQVVLDTDRRQTNETVFDPESQVVRSVRSVRDQA 297

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
            S+ ++   AV VEQN+P          RS +  D++EE +NYEIN+K+I+T  D Y ++
Sbjct: 298 DSQNNRNSDAVGVEQNIPQEEIANGSGERSTDKKDRREETTNYEINSKTISTVSDGYSVK 357

Query: 356 RLSIAVVVNKGRLT-EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           +L++A+VV++ RLT     +   +  ++  +  I ++V+ A G++ +RGD I +T++DF+
Sbjct: 358 KLAVAIVVDRARLTLPDSTKPTSESALNEEINRIQQMVATAAGLDPKRGDIINVTAVDFI 417

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
            +   +   VQ+    +LSR+ + +IN +  ++  LL+ FLG+  L R   + + KK   
Sbjct: 418 GHTESDMIPVQMPLWKLLSRYTSALINGVALVIAVLLILFLGVRPLMR--EMREGKKALE 475

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIA-LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
             K+ ++      A+      N   + +  ++ D      NL++R+   V  Q+  RL  
Sbjct: 476 NSKNAMADLENIPALEHQYQANAEFSGITGTSDDTHDALHNLRNRMR--VPPQN--RLEQ 531

Query: 534 MIEINEERFAKILRKW 549
           MI ++EERFA +LR+W
Sbjct: 532 MIAMDEERFAGVLREW 547


>gi|121602745|ref|YP_989390.1| flagellar MS-ring protein [Bartonella bacilliformis KC583]
 gi|120614922|gb|ABM45523.1| flagellar M-ring protein FliF [Bartonella bacilliformis KC583]
          Length = 553

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 219/560 (39%), Positives = 339/560 (60%), Gaps = 29/560 (5%)

Query: 3   ILDQLLQFFKSGTS----LGRTRILILASVILVPIMLF---MAARFFVNSPHYDNLYVKL 55
           +LD+   F  S  S    LG  R++ L    LV + LF   + + F++  P ++ LYV L
Sbjct: 1   MLDKFFVFLSSSGSALYKLGAKRLIALG---LVGVTLFGTILFSSFYLTRPSHETLYVGL 57

Query: 56  EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115
              DVNRI +AL EA I F +S +G S+ VP      AR+ LA +GLP+S+ N+GYELFD
Sbjct: 58  SRDDVNRIGMALGEAGIAFDVSSDGGSVQVPVGQAEHARMFLAEKGLPTSN-NAGYELFD 116

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
            + S GLTSFMQEITR RALEGEIARTIQ++ G+ AARVHIV+PD GSFR+   +PTASV
Sbjct: 117 NMGSLGLTSFMQEITRQRALEGEIARTIQAVQGVKAARVHIVLPDKGSFRRANQKPTASV 176

Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ 235
           +IR       +SA++IRHLVAAAVP+L+   VTV+D+ G++L +     + +  +  ++ 
Sbjct: 177 VIRTDGGFSVESAQSIRHLVAAAVPSLEASSVTVMDTRGQMLASGV---DAINGAPVVMA 233

Query: 236 AIQH----EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
           +++H    +I+ NI K L  +LG+D+F+++V   L+ D +QI E ++DP+S+V RSIR  
Sbjct: 234 SLEHQVASQIDANIRKQLVPYLGLDHFQTSVQVALDTDRRQINETIFDPESQVVRSIRSV 293

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           +D   S+ S+   AV VEQN+P           S +  D++EE +NYEIN+K I+T  D 
Sbjct: 294 RDQADSQNSRNSDAVGVEQNIPQEEIANGSGETSTDKKDRREETTNYEINSKIISTVRDG 353

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSA-DQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
           Y +++L+IA+VV++ RL    G +   +  I+  +  I ++VSAA G++  RGD I +T+
Sbjct: 354 YSVKKLAIAIVVDRARLVPANGETTVSEDFINDEVNRIQQMVSAAAGLDPNRGDIINVTA 413

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           +DF+ +   +   ++      +SR+   V+N +  ++  LL+ FLG+  L R   + + +
Sbjct: 414 VDFIGHNDADLTPIETPLWKSVSRYIPGVVNGVALVIAVLLILFLGVRPLMR--EMREGQ 471

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNI-ALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
           K    G++ L+      A+         +  +  +N D     R+L++R+   V  Q+  
Sbjct: 472 KARNSGENALAGLGAVPALDNQSQAAAGVGGVTKTNDDTL---RDLRNRMR--VPPQN-- 524

Query: 530 RLLHMIEINEERFAKILRKW 549
           RL  MI+++EERFA ILR+W
Sbjct: 525 RLEKMIDMDEERFAGILREW 544


>gi|319403971|emb|CBI77559.1| Flagellar M-ring protein [Bartonella rochalimae ATCC BAA-1498]
          Length = 554

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 222/563 (39%), Positives = 336/563 (59%), Gaps = 35/563 (6%)

Query: 3   ILDQLLQFFKSGTS----LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           +LD+ L F  S  +    LG  R++ L  V L      + + F++  P Y+ LYV L   
Sbjct: 1   MLDKFLAFLSSSGNALHKLGVKRLIALGMVGLTLFGTILFSSFYLTRPIYEILYVGLSRD 60

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
           DVNR+ +AL EA I F +S +GS++ VP     +AR+ LA +GLP+S+ N+GYELFD + 
Sbjct: 61  DVNRMGMALGEAGIAFDVSSDGSTVQVPVGQAEQARMFLAEKGLPTSN-NAGYELFDNMG 119

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178
           S GLTSFMQEITR RALEGEIARTIQ++ G+ AARVHIV+PD GSFRK   +PTASV+IR
Sbjct: 120 SLGLTSFMQEITRQRALEGEIARTIQAVQGLKAARVHIVLPDKGSFRKANQKPTASVVIR 179

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL---SIVQ 235
             +    + A++IR LVAAAVP+L+   VTV+D+ G+LL +     N  G S+   S+ Q
Sbjct: 180 TNSGFAVEFAQSIRQLVAAAVPSLEASSVTVMDTRGQLLASGVDAMN--GASMMMASLEQ 237

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            +  +I+ NI K L  +LG+D+F+++V   L+ D +Q  E V+DP+S+V RS+R  +D  
Sbjct: 238 QVASQIDANIRKQLVPYLGLDHFQTSVQVVLDTDRRQTNETVFDPESQVVRSVRSVRDQA 297

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
            S+ ++   AV VEQN+P          RS +  D++EE +NYEIN+K+I+T  D Y ++
Sbjct: 298 DSQNNRNSDAVGVEQNIPQEEIANGGGERSTDKKDRREEITNYEINSKTISTVSDGYSVK 357

Query: 356 RLSIAVVVNKGRLTEVLG-RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           +L++A+VV++ RL    G +   +  ++  +  I ++V+ A G++ +RGD I +T++DF+
Sbjct: 358 KLAVAIVVDRARLVLPDGTKPTSENALNDEVNRIQQMVATAAGLDPKRGDIINVTAVDFV 417

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR--------LHNI 466
            N   +   VQ      LSR+ + +IN +  ++   L+ FLG+  L R        L N 
Sbjct: 418 GNSEADMAPVQEPLWKSLSRYTSGLINGVALVIAVFLILFLGVRPLMREMREGKKALENS 477

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
           ++A  G +G    L      +A   G+   +N  L            NL++R+   V  Q
Sbjct: 478 ENAVAG-LGNIPALEHQYQDNAEFGGVTGTNNDTL-----------HNLRNRMR--VPPQ 523

Query: 527 SDLRLLHMIEINEERFAKILRKW 549
           +  RL  MI ++EERFA +LR+W
Sbjct: 524 N--RLEQMIAMDEERFAGVLREW 544


>gi|319406987|emb|CBI80624.1| Flagellar M-ring protein [Bartonella sp. 1-1C]
          Length = 554

 Score =  366 bits (940), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 221/563 (39%), Positives = 334/563 (59%), Gaps = 35/563 (6%)

Query: 3   ILDQLLQFFKSGTS----LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           +LD+   F  S  +    LG  R++ L  V L      + + F++  P Y+ LYV L   
Sbjct: 1   MLDKFWVFLSSSGNALHKLGVKRLIALGMVGLTLFGTILFSSFYLTRPIYETLYVGLSRD 60

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
           DVNR+ +ALSEA I F +S +G ++ VP     +AR+ LA +GLP+S+ N+GYELFD + 
Sbjct: 61  DVNRMGMALSEAGIAFDVSSDGGTVQVPVGQAEQARMFLAEKGLPTSN-NAGYELFDNMG 119

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178
           S GLTSFMQEITR RALEGEIARTIQ + G+ AARVHIV+PD GSFRK   +PTASV+IR
Sbjct: 120 SLGLTSFMQEITRQRALEGEIARTIQVVQGVKAARVHIVLPDKGSFRKANQKPTASVVIR 179

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL---SIVQ 235
             +    + A++IR LVAAAVP+L+   VTV+D+ G+LL +     N  G S+   S+ Q
Sbjct: 180 TNSSFSVEFAQSIRQLVAAAVPSLEASSVTVMDTRGQLLASGVDAMN--GASMMMASLEQ 237

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            +  +I+ NI K L  +LG+D+F+++V   L+ D +Q  E V+DP+S+V RS+R  +D  
Sbjct: 238 QVASQIDANIRKQLVPYLGLDHFQTSVQVVLDTDRRQTNETVFDPESQVVRSVRSVRDQA 297

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
            S+ ++   AV VEQN+P          RS +  D++EE +NYEIN+K+I+T  D Y ++
Sbjct: 298 DSQNNRNSDAVGVEQNIPQEEIANGGGERSTDKKDRREEITNYEINSKTISTVSDGYSVK 357

Query: 356 RLSIAVVVNKGRLTEVLG-RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           +L++A+VV++ RL    G +   +  ++  +  I ++V+ A G++ +RGD I +T++DF+
Sbjct: 358 KLAVAIVVDRARLVLPDGTKPTSENALNDEVNRIQQMVATAAGLDPKRGDIINVTAVDFV 417

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR--------LHNI 466
            N   +   +Q      LSR+ + +IN +  ++   L+ FLG+  L R        L N 
Sbjct: 418 GNSEADMAPIQEPLWKSLSRYTSGLINGVALVIAVFLILFLGVRPLMREMREGKKALENS 477

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
            +A  G +G    L      +A   G+          +N D  S   NL++R+   V  Q
Sbjct: 478 ANAVAG-LGNIPALEHQYQDNAEFGGVT--------GTNNDTLS---NLRNRMR--VPPQ 523

Query: 527 SDLRLLHMIEINEERFAKILRKW 549
           +  RL  MI ++EERFA +LR+W
Sbjct: 524 N--RLEQMIAMDEERFAGVLREW 544


>gi|319405414|emb|CBI79033.1| Flagellar M-ring protein FliF [Bartonella sp. AR 15-3]
          Length = 554

 Score =  366 bits (940), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 217/556 (39%), Positives = 335/556 (60%), Gaps = 21/556 (3%)

Query: 3   ILDQLLQFFKSGTS----LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           + D+ L F  S  +    LG  R++ L  V L      + + F++  P Y+ LYV L   
Sbjct: 1   MFDKFLAFLSSSGNALYKLGVKRLIALGMVGLTLFGTILFSSFYLTRPVYETLYVGLSRD 60

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
           DVNR+ +AL EA I F +S +GS + VP     +AR+ LA +GLP+S+ N+GYELFD + 
Sbjct: 61  DVNRMGMALGEAGIAFDVSSDGSVVQVPVGQAEQARMFLAEKGLPTSN-NAGYELFDNMG 119

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178
           S GLTSFMQEITR RALEGEIARTIQ + G+ AARVHIV+PD GSFRK   +PTASV+IR
Sbjct: 120 SLGLTSFMQEITRQRALEGEIARTIQVVQGVKAARVHIVLPDKGSFRKANQKPTASVVIR 179

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL---SIVQ 235
             +    +SA++IR LVAAAVP+L+   VTV+D+ G+LL +     N  G S+   S+ Q
Sbjct: 180 TNSGFAVESAQSIRQLVAAAVPSLEASSVTVMDTRGQLLASGVDAMN--GASIMMASLEQ 237

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            +  +I+ NI K L  +LG+D+F+++V   L+ D +Q  E V+DP+S+V RS+R  +D  
Sbjct: 238 QVASQIDANIRKQLVPYLGLDHFQTSVQVVLDTDRRQTNETVFDPESQVVRSVRSVRDQA 297

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
            S+ ++   AV VEQN+P           S +  D++EE +NYEIN+K+I+T  D Y ++
Sbjct: 298 DSQNNRNSDAVGVEQNIPQEEIANGGGETSTDKKDRREEITNYEINSKTISTVSDGYSVK 357

Query: 356 RLSIAVVVNKGRLTEVLG-RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           +L++A+VV++ RL    G +   +  ++  +  I ++V+AA G++ +RGD I +T++DF+
Sbjct: 358 KLAVAIVVDRARLILPDGTKPTSENALNDEVNRIQQMVAAAAGLDPKRGDIINVTAVDFV 417

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
            +   +   VQ      LSR+ + +IN +  ++   L+ FLG+  L R   + + KK   
Sbjct: 418 GHSEADMAPVQTPIWKSLSRYTSGLINGVALVIAVFLILFLGVRPLMR--EMREGKKALE 475

Query: 475 GGKSILSPPPISSAVTTGLMPNDNI-ALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
             ++ ++      A+      N    ++  +N D  +   NL++R+   V  Q+  RL  
Sbjct: 476 NNENTVAGLGNIPALEHQYQANAEFGSVRGTNNDTLN---NLRNRMR--VPPQN--RLEQ 528

Query: 534 MIEINEERFAKILRKW 549
           MI ++EERFA +LR+W
Sbjct: 529 MIAMDEERFAGVLREW 544


>gi|254504967|ref|ZP_05117118.1| flagellar M-ring protein FliF [Labrenzia alexandrii DFL-11]
 gi|222441038|gb|EEE47717.1| flagellar M-ring protein FliF [Labrenzia alexandrii DFL-11]
          Length = 548

 Score =  360 bits (924), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 219/544 (40%), Positives = 322/544 (59%), Gaps = 30/544 (5%)

Query: 17  LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76
           LG  R++ LA + L  I    A  F+++ P    LY  L   DV+RI  AL +A I F +
Sbjct: 17  LGMRRLIALALIGLATIATVGAGAFYLSRPETTPLYTGLTGEDVSRIGSALRDAGIPFDV 76

Query: 77  SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136
           S  G ++ V      KAR+ LA +GLP  + NSGYELFD + S GLTSFMQE+TRVRALE
Sbjct: 77  SSEGDAVMVSHGQTAKARMLLAEKGLPRGA-NSGYELFDDLGSLGLTSFMQEVTRVRALE 135

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVA 196
           GE+ARTIQ + GI AARVHIV+P+ GSFR+    P+ASV+IR+  P   ++A+AIRHLVA
Sbjct: 136 GELARTIQLMKGIRAARVHIVLPEKGSFRRDQQPPSASVVIRSDIPDDVRTADAIRHLVA 195

Query: 197 AAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255
           A VP ++   VTVLD+TG +L A  +  +   G+  ++  A+ + I+ N+ K L  +LG+
Sbjct: 196 AGVPGMEAAKVTVLDTTGGILAAGKDPTKASAGQMATLETAVSNRIQENVRKTLTPYLGL 255

Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV 315
           DNF+ +V A+LN D + I E ++DPDS++ERS+R  ++ + +E S   + VT EQN+P  
Sbjct: 256 DNFQVSVAAKLNTDRKMIAETIFDPDSRIERSVRTIRENENAENSSAATPVTAEQNLPDE 315

Query: 316 SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS 375
           +       RSLE T+++EE  NYEI++K I T+ D Y+++RLSIAV+V++ RL   LG S
Sbjct: 316 NVEADGGERSLEETERREETVNYEISSKRIETSQDGYRVDRLSIAVLVDRTRLAASLGGS 375

Query: 376 ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435
             Q +I+  + EI  +V+++ G+   RGD + I+ +DF++          +   + L R 
Sbjct: 376 PTQSQIEEQVREIEALVASSAGVTEERGDLVKISVVDFVDGGRDLEPIPPIGVTEYLLRQ 435

Query: 436 FATVINALVFLVGTLLVTFLGLH----ALRRLHNIDDAKKGEVGGKSILSPPPISSAV-- 489
              +INAL  L  ++LV + GL     AL    + + A+  E+G    L P  +  A   
Sbjct: 436 SGNIINALAILTVSMLVIWFGLRPAVAALVPQVSSEQAEMAEIG----LLPEGLEDAADA 491

Query: 490 ----TTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545
               T  LMP D             HS +L   +NS  +K +  +L  ++E NEE+ A I
Sbjct: 492 MDGETGFLMPPD-------------HS-DLLHDLNSKRNKSALKKLESLLEFNEEQSAAI 537

Query: 546 LRKW 549
           LR+W
Sbjct: 538 LRQW 541


>gi|256059797|ref|ZP_05449992.1| flagellar MS-ring protein [Brucella neotomae 5K33]
 gi|261323777|ref|ZP_05962974.1| flagellar M-ring protein FliF [Brucella neotomae 5K33]
 gi|261299757|gb|EEY03254.1| flagellar M-ring protein FliF [Brucella neotomae 5K33]
          Length = 580

 Score =  356 bits (913), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 222/558 (39%), Positives = 333/558 (59%), Gaps = 23/558 (4%)

Query: 4   LDQLLQFFKSGT--SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
             QL++  K GT   LG  ++++L  V    +   +    ++  P Y+ LYV L   DVN
Sbjct: 10  FQQLIEQLK-GTLGKLGARKLIVLGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 68

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           R+ +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S G
Sbjct: 69  RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 127

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA  
Sbjct: 128 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 187

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHE 240
               +SA++IR LVAAAVP+LD   VTVLD+ G LL +A E        + S+ Q +   
Sbjct: 188 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 247

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           ++ +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  +
Sbjct: 248 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 307

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           + ++A  VEQN+P    +      S E TD++EE +NYE+N+K+++T  D Y ++RLSIA
Sbjct: 308 RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIA 367

Query: 361 VVVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           VV+++ RL +  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL+    
Sbjct: 368 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGA 427

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA-------KKG 472
           +   V   + D L R   +  NAL  L    L+ + GL  L R  N+  A       + G
Sbjct: 428 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 487

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS-RNLQSRINSYVSKQSDLRL 531
           EV      +P  I  A + G      I   ++  D    S  +L+ R+       + LRL
Sbjct: 488 EVA-----TPNFIGGAESVGEGVQAVIGGPAAYADQMKTSLSDLRQRMR----MPAKLRL 538

Query: 532 LHMIEINEERFAKILRKW 549
             MIE++EER A +L++W
Sbjct: 539 EQMIEMDEERVAAVLKQW 556


>gi|161621189|ref|YP_001595075.1| flagellar MS-ring protein [Brucella canis ATCC 23365]
 gi|161338000|gb|ABX64304.1| flagellar M-ring protein FliF [Brucella canis ATCC 23365]
          Length = 580

 Score =  356 bits (913), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 225/560 (40%), Positives = 337/560 (60%), Gaps = 27/560 (4%)

Query: 4   LDQLLQFFKSGT--SLGRTRILILASV--ILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
             QL++  K GT   LG  +++ L  V   L+  +L+M+   ++  P Y+ LYV L   D
Sbjct: 10  FQQLIEQLK-GTLGKLGARKLIALGLVGAALMSAILYMS--IYLGRPSYETLYVGLSRDD 66

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
           VNR+ +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S
Sbjct: 67  VNRMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGS 125

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
            GLTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA
Sbjct: 126 LGLTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRA 185

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQ 238
                 +SA++IR LVAAAVP+LD   VTVLD+ G LL +A E        + S+ Q + 
Sbjct: 186 EGGFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVA 245

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
             ++ +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S 
Sbjct: 246 SHVDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSR 305

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
            ++ ++A  VEQN+P    +      S E TD++EE +NYE+N+K+++T  D Y ++RLS
Sbjct: 306 NNRNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLS 365

Query: 359 IAVVVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           IAVV+++ RL +  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL+  
Sbjct: 366 IAVVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPA 425

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA-------K 470
             +   V   + D L R   +  NAL  L    L+ + GL  L R  N+  A       +
Sbjct: 426 GADMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIRE 485

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS-RNLQSRINSYVSKQSDL 529
            GEV      +P  I  A + G      I   ++  D    S  +L+ R+       + L
Sbjct: 486 AGEVA-----TPNFIGGAESVGEGVQAVIGGPAAYADQMKTSLSDLRQRMR----MPAKL 536

Query: 530 RLLHMIEINEERFAKILRKW 549
           RL  MIE++EER A +L++W
Sbjct: 537 RLEQMIEMDEERVAAVLKQW 556


>gi|260568707|ref|ZP_05839176.1| flagellar M-ring protein FliF [Brucella suis bv. 4 str. 40]
 gi|260155372|gb|EEW90453.1| flagellar M-ring protein FliF [Brucella suis bv. 4 str. 40]
          Length = 580

 Score =  355 bits (912), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 225/560 (40%), Positives = 337/560 (60%), Gaps = 27/560 (4%)

Query: 4   LDQLLQFFKSGT--SLGRTRILILASV--ILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
             QL++  K GT   LG  +++ L  V   L+  +L+M+   ++  P Y+ LYV L   D
Sbjct: 10  FQQLIEQLK-GTLGKLGARKLIALGLVGAALMGAILYMS--IYLGRPSYETLYVGLSRDD 66

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
           VNR+ +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S
Sbjct: 67  VNRMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGS 125

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
            GLTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA
Sbjct: 126 LGLTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRA 185

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQ 238
                 +SA++IR LVAAAVP+LD   VTVLD+ G LL +A E        + S+ Q + 
Sbjct: 186 EGGFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVA 245

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
             ++ +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S 
Sbjct: 246 SHVDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSR 305

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
            ++ ++A  VEQN+P    +      S E TD++EE +NYE+N+K+++T  D Y ++RLS
Sbjct: 306 NNRNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLS 365

Query: 359 IAVVVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           IAVV+++ RL +  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL+  
Sbjct: 366 IAVVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPA 425

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA-------K 470
             +   V   + D L R   +  NAL  L    L+ + GL  L R  N+  A       +
Sbjct: 426 GADMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIRE 485

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS-RNLQSRINSYVSKQSDL 529
            GEV      +P  I  A + G      I   ++  D    S  +L+ R+       + L
Sbjct: 486 AGEVA-----TPNFIGGAESVGEGVQAVIGGPAAYADQMKTSLSDLRQRMR----MPAKL 536

Query: 530 RLLHMIEINEERFAKILRKW 549
           RL  MIE++EER A +L++W
Sbjct: 537 RLEQMIEMDEERVAAVLKQW 556


>gi|189023215|ref|YP_001932956.1| flagellar MS-ring protein [Brucella abortus S19]
 gi|254691603|ref|ZP_05154857.1| flagellar MS-ring protein [Brucella abortus bv. 6 str. 870]
 gi|254698196|ref|ZP_05160024.1| flagellar MS-ring protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|254699268|ref|ZP_05161096.1| flagellar MS-ring protein [Brucella suis bv. 5 str. 513]
 gi|254702392|ref|ZP_05164220.1| flagellar MS-ring protein [Brucella suis bv. 3 str. 686]
 gi|254711225|ref|ZP_05173036.1| flagellar MS-ring protein [Brucella pinnipedialis B2/94]
 gi|254731641|ref|ZP_05190219.1| flagellar MS-ring protein [Brucella abortus bv. 4 str. 292]
 gi|256030146|ref|ZP_05443760.1| flagellar MS-ring protein [Brucella pinnipedialis M292/94/1]
 gi|256256791|ref|ZP_05462327.1| flagellar MS-ring protein [Brucella abortus bv. 9 str. C68]
 gi|189021789|gb|ACD74510.1| flagellar M-ring protein FliF [Brucella abortus S19]
          Length = 575

 Score =  354 bits (909), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 222/558 (39%), Positives = 332/558 (59%), Gaps = 23/558 (4%)

Query: 4   LDQLLQFFKSGT--SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
             QL++  K GT   LG  +++ L  V    +   +    ++  P Y+ LYV L   DVN
Sbjct: 5   FQQLIEQLK-GTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           R+ +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S G
Sbjct: 64  RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 122

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA  
Sbjct: 123 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 182

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHE 240
               +SA++IR LVAAAVP+LD   VTVLD+ G LL +A E        + S+ Q +   
Sbjct: 183 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 242

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           ++ +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  +
Sbjct: 243 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 302

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           + ++A  VEQN+P    +      S E TD++EE +NYE+N+K+++T  D Y ++RLSIA
Sbjct: 303 RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIA 362

Query: 361 VVVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           VV+++ RL +  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL+    
Sbjct: 363 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGA 422

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA-------KKG 472
           +   V   + D L R   +  NAL  L    L+ + GL  L R  N+  A       + G
Sbjct: 423 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 482

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS-RNLQSRINSYVSKQSDLRL 531
           EV      +P  I  A + G      I   ++  D    S  +L+ R+       + LRL
Sbjct: 483 EVA-----TPNFIGGAESVGEGVQAVIGGPAAYADQMKTSLSDLRQRMR----MPAKLRL 533

Query: 532 LHMIEINEERFAKILRKW 549
             MIE++EER A +L++W
Sbjct: 534 EQMIEMDEERVAAVLKQW 551


>gi|23500860|ref|NP_700300.1| flagellar MS-ring protein [Brucella suis 1330]
 gi|83269941|ref|YP_419232.1| flagellar MS-ring protein [Brucella melitensis biovar Abortus 2308]
 gi|225628435|ref|ZP_03786469.1| flagellar M-ring protein FliF [Brucella ceti str. Cudo]
 gi|237817511|ref|ZP_04596501.1| flagellar M-ring protein FliF [Brucella abortus str. 2308 A]
 gi|256015905|ref|YP_003105914.1| flagellar M-ring protein FliF [Brucella microti CCM 4915]
 gi|260166802|ref|ZP_05753613.1| flagellar MS-ring protein [Brucella sp. F5/99]
 gi|260544149|ref|ZP_05819970.1| flagellar M-ring protein FliF [Brucella abortus NCTC 8038]
 gi|260757235|ref|ZP_05869583.1| flagellar M-ring protein FliF [Brucella abortus bv. 6 str. 870]
 gi|260759400|ref|ZP_05871748.1| flagellar M-ring protein FliF [Brucella abortus bv. 4 str. 292]
 gi|260762643|ref|ZP_05874975.1| flagellar M-ring protein FliF [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883039|ref|ZP_05894653.1| flagellar M-ring protein FliF [Brucella abortus bv. 9 str. C68]
 gi|261318817|ref|ZP_05958014.1| flagellar M-ring protein FliF [Brucella pinnipedialis B2/94]
 gi|261749710|ref|ZP_05993419.1| flagellar M-ring protein [Brucella suis bv. 5 str. 513]
 gi|261752953|ref|ZP_05996662.1| flagellar M-ring protein FliF [Brucella suis bv. 3 str. 686]
 gi|261756180|ref|ZP_05999889.1| flagellar M-ring protein FliF [Brucella sp. F5/99]
 gi|265987176|ref|ZP_06099733.1| flagellar M-ring protein FliF [Brucella pinnipedialis M292/94/1]
 gi|294852976|ref|ZP_06793648.1| flagellar M-ring protein FliF [Brucella sp. NVSL 07-0026]
 gi|297250144|ref|ZP_06933845.1| flagellar M-ring protein FliF [Brucella abortus bv. 5 str. B3196]
 gi|38257618|sp|Q8FUS3|FLIF_BRUSU RecName: Full=Flagellar M-ring protein FliF
 gi|23464525|gb|AAN34305.1| flagellar M-ring protein FliF [Brucella suis 1330]
 gi|82940215|emb|CAJ13271.1| Flagellar FliF M-ring protein:Type III secretion system outer
           membrane K protein:Secretory protein YscJ/FliF [Brucella
           melitensis biovar Abortus 2308]
 gi|225616281|gb|EEH13329.1| flagellar M-ring protein FliF [Brucella ceti str. Cudo]
 gi|237787266|gb|EEP61484.1| flagellar M-ring protein FliF [Brucella abortus str. 2308 A]
 gi|255998565|gb|ACU50252.1| flagellar M-ring protein FliF [Brucella microti CCM 4915]
 gi|260097420|gb|EEW81294.1| flagellar M-ring protein FliF [Brucella abortus NCTC 8038]
 gi|260669718|gb|EEX56658.1| flagellar M-ring protein FliF [Brucella abortus bv. 4 str. 292]
 gi|260673064|gb|EEX59885.1| flagellar M-ring protein FliF [Brucella abortus bv. 2 str. 86/8/59]
 gi|260677343|gb|EEX64164.1| flagellar M-ring protein FliF [Brucella abortus bv. 6 str. 870]
 gi|260872567|gb|EEX79636.1| flagellar M-ring protein FliF [Brucella abortus bv. 9 str. C68]
 gi|261298040|gb|EEY01537.1| flagellar M-ring protein FliF [Brucella pinnipedialis B2/94]
 gi|261736164|gb|EEY24160.1| flagellar M-ring protein FliF [Brucella sp. F5/99]
 gi|261739463|gb|EEY27389.1| flagellar M-ring protein [Brucella suis bv. 5 str. 513]
 gi|261742706|gb|EEY30632.1| flagellar M-ring protein FliF [Brucella suis bv. 3 str. 686]
 gi|264659373|gb|EEZ29634.1| flagellar M-ring protein FliF [Brucella pinnipedialis M292/94/1]
 gi|294818631|gb|EFG35631.1| flagellar M-ring protein FliF [Brucella sp. NVSL 07-0026]
 gi|297174013|gb|EFH33377.1| flagellar M-ring protein FliF [Brucella abortus bv. 5 str. B3196]
          Length = 580

 Score =  354 bits (909), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 222/558 (39%), Positives = 332/558 (59%), Gaps = 23/558 (4%)

Query: 4   LDQLLQFFKSGT--SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
             QL++  K GT   LG  +++ L  V    +   +    ++  P Y+ LYV L   DVN
Sbjct: 10  FQQLIEQLK-GTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 68

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           R+ +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S G
Sbjct: 69  RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 127

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA  
Sbjct: 128 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 187

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHE 240
               +SA++IR LVAAAVP+LD   VTVLD+ G LL +A E        + S+ Q +   
Sbjct: 188 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 247

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           ++ +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  +
Sbjct: 248 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 307

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           + ++A  VEQN+P    +      S E TD++EE +NYE+N+K+++T  D Y ++RLSIA
Sbjct: 308 RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIA 367

Query: 361 VVVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           VV+++ RL +  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL+    
Sbjct: 368 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGA 427

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA-------KKG 472
           +   V   + D L R   +  NAL  L    L+ + GL  L R  N+  A       + G
Sbjct: 428 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 487

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS-RNLQSRINSYVSKQSDLRL 531
           EV      +P  I  A + G      I   ++  D    S  +L+ R+       + LRL
Sbjct: 488 EVA-----TPNFIGGAESVGEGVQAVIGGPAAYADQMKTSLSDLRQRMR----MPAKLRL 538

Query: 532 LHMIEINEERFAKILRKW 549
             MIE++EER A +L++W
Sbjct: 539 EQMIEMDEERVAAVLKQW 556


>gi|306841269|ref|ZP_07473980.1| flagellar M-ring protein FliF [Brucella sp. BO2]
 gi|306288671|gb|EFM60002.1| flagellar M-ring protein FliF [Brucella sp. BO2]
          Length = 542

 Score =  353 bits (907), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 214/519 (41%), Positives = 317/519 (61%), Gaps = 20/519 (3%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            ++  P Y+ LYV L   DVNR+ +AL EA I F +  +GSSI VP      AR++LA +
Sbjct: 10  IYLGRPSYETLYVGLSRDDVNRMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEK 69

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP+S+ N+GYELFD + S GLTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ +
Sbjct: 70  GLPTSN-NAGYELFDNMGSLGLTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAE 128

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TA 219
            GSFR+   +P+ASV+IRA      +SA++IR LVAAAVP+LD   VTVLD+ G LL +A
Sbjct: 129 KGSFRRGDQKPSASVVIRAEGGFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASA 188

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
            E        + S+ Q +   ++ +I KALA +LG+ +F+++V A L+ D +Q +E  YD
Sbjct: 189 GEGANGAALMTASLEQQVASHVDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYD 248

Query: 280 PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYE 339
           P+S+VERS+R+ +++  S  ++ ++A  VEQN+P    +      S E TD++EE +NYE
Sbjct: 249 PESRVERSVRVVRESGDSRNNRNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYE 308

Query: 340 INTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGI 398
           +N+K+++T  D Y ++RLSIAVV+++ RL +  G +      +D  + +I  +V+ A G+
Sbjct: 309 VNSKTVSTVSDGYSIKRLSIAVVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGL 368

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           N+ RGD I +T+++FL+    +   V   + D L R   +  NAL  L    L+ + GL 
Sbjct: 369 NANRGDVINVTAVNFLDPAGADMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLR 428

Query: 459 ALRRLHNIDDA-------KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSH 511
            L R  N+  A       + GEV      +P  I SA + G      I   ++  D    
Sbjct: 429 PLLRDQNVKPAGTEVAIREAGEVA-----TPNFIGSAESVGEGAQAVIGGPAAYADQMKT 483

Query: 512 S-RNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549
           S  +L+ R+       + LRL  MIE++EER A +L++W
Sbjct: 484 SLSDLRQRMR----MPAKLRLEQMIEMDEERVAAVLKQW 518


>gi|261215451|ref|ZP_05929732.1| flagellar M-ring protein FliF [Brucella abortus bv. 3 str. Tulya]
 gi|260917058|gb|EEX83919.1| flagellar M-ring protein FliF [Brucella abortus bv. 3 str. Tulya]
          Length = 580

 Score =  353 bits (906), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 222/558 (39%), Positives = 332/558 (59%), Gaps = 23/558 (4%)

Query: 4   LDQLLQFFKSGT--SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
             QL++  K GT   LG  +++ L  V    +   +    ++  P Y+ LYV L   DVN
Sbjct: 10  FQQLIEQLK-GTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 68

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           R+ +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S G
Sbjct: 69  RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 127

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA  
Sbjct: 128 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 187

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHE 240
               +SA++IR LVAAAVP+LD   VTVLD+ G LL +A E        + S+ Q +   
Sbjct: 188 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 247

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           ++ +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  +
Sbjct: 248 VDDSIRKALAPYLGLGHFQTSVQAVLDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 307

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           + ++A  VEQN+P    +      S E TD++EE +NYE+N+K+++T  D Y ++RLSIA
Sbjct: 308 RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIA 367

Query: 361 VVVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           VV+++ RL +  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL+    
Sbjct: 368 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGA 427

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA-------KKG 472
           +   V   + D L R   +  NAL  L    L+ + GL  L R  N+  A       + G
Sbjct: 428 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 487

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS-RNLQSRINSYVSKQSDLRL 531
           EV      +P  I  A + G      I   ++  D    S  +L+ R+       + LRL
Sbjct: 488 EVA-----TPNFIGGAESVGEGVQAVIGGPAAYADQMKTSLSDLRQRMR----MPAKLRL 538

Query: 532 LHMIEINEERFAKILRKW 549
             MIE++EER A +L++W
Sbjct: 539 EQMIEMDEERVAAVLKQW 556


>gi|254695100|ref|ZP_05156928.1| flagellar MS-ring protein [Brucella abortus bv. 3 str. Tulya]
          Length = 575

 Score =  353 bits (906), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 222/558 (39%), Positives = 332/558 (59%), Gaps = 23/558 (4%)

Query: 4   LDQLLQFFKSGT--SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
             QL++  K GT   LG  +++ L  V    +   +    ++  P Y+ LYV L   DVN
Sbjct: 5   FQQLIEQLK-GTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           R+ +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S G
Sbjct: 64  RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 122

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA  
Sbjct: 123 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 182

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHE 240
               +SA++IR LVAAAVP+LD   VTVLD+ G LL +A E        + S+ Q +   
Sbjct: 183 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 242

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           ++ +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  +
Sbjct: 243 VDDSIRKALAPYLGLGHFQTSVQAVLDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 302

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           + ++A  VEQN+P    +      S E TD++EE +NYE+N+K+++T  D Y ++RLSIA
Sbjct: 303 RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIA 362

Query: 361 VVVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           VV+++ RL +  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL+    
Sbjct: 363 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGA 422

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA-------KKG 472
           +   V   + D L R   +  NAL  L    L+ + GL  L R  N+  A       + G
Sbjct: 423 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 482

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS-RNLQSRINSYVSKQSDLRL 531
           EV      +P  I  A + G      I   ++  D    S  +L+ R+       + LRL
Sbjct: 483 EVA-----TPNFIGGAESVGEGVQAVIGGPAAYADQMKTSLSDLRQRMR----MPAKLRL 533

Query: 532 LHMIEINEERFAKILRKW 549
             MIE++EER A +L++W
Sbjct: 534 EQMIEMDEERVAAVLKQW 551


>gi|256158325|ref|ZP_05456229.1| flagellar MS-ring protein [Brucella ceti M490/95/1]
 gi|256252741|ref|ZP_05458277.1| flagellar MS-ring protein [Brucella ceti B1/94]
          Length = 575

 Score =  353 bits (906), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 222/558 (39%), Positives = 331/558 (59%), Gaps = 23/558 (4%)

Query: 4   LDQLLQFFKSGT--SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
             QL++  K GT   LG  +++ L  V    +   +    ++  P Y+ LYV L   DVN
Sbjct: 5   FQQLIEQLK-GTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           R+  AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S G
Sbjct: 64  RMGRALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 122

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA  
Sbjct: 123 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 182

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHE 240
               +SA++IR LVAAAVP+LD   VTVLD+ G LL +A E        + S+ Q +   
Sbjct: 183 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 242

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           ++ +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  +
Sbjct: 243 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 302

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           + ++A  VEQN+P    +      S E TD++EE +NYE+N+K+++T  D Y ++RLSIA
Sbjct: 303 RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIA 362

Query: 361 VVVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           VV+++ RL +  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL+    
Sbjct: 363 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGA 422

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA-------KKG 472
           +   V   + D L R   +  NAL  L    L+ + GL  L R  N+  A       + G
Sbjct: 423 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 482

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS-RNLQSRINSYVSKQSDLRL 531
           EV      +P  I  A + G      I   ++  D    S  +L+ R+       + LRL
Sbjct: 483 EVA-----TPNFIGGAESVGEGVQAVIGGPAAYADQMKTSLSDLRQRMR----MPAKLRL 533

Query: 532 LHMIEINEERFAKILRKW 549
             MIE++EER A +L++W
Sbjct: 534 EQMIEMDEERVAAVLKQW 551


>gi|261219820|ref|ZP_05934101.1| flagellar M-ring protein FliF [Brucella ceti B1/94]
 gi|265996839|ref|ZP_06109396.1| flagellar M-ring protein FliF [Brucella ceti M490/95/1]
 gi|260918404|gb|EEX85057.1| flagellar M-ring protein FliF [Brucella ceti B1/94]
 gi|262551136|gb|EEZ07297.1| flagellar M-ring protein FliF [Brucella ceti M490/95/1]
          Length = 580

 Score =  353 bits (905), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 222/558 (39%), Positives = 331/558 (59%), Gaps = 23/558 (4%)

Query: 4   LDQLLQFFKSGT--SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
             QL++  K GT   LG  +++ L  V    +   +    ++  P Y+ LYV L   DVN
Sbjct: 10  FQQLIEQLK-GTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 68

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           R+  AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S G
Sbjct: 69  RMGRALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 127

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA  
Sbjct: 128 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 187

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHE 240
               +SA++IR LVAAAVP+LD   VTVLD+ G LL +A E        + S+ Q +   
Sbjct: 188 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 247

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           ++ +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  +
Sbjct: 248 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 307

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           + ++A  VEQN+P    +      S E TD++EE +NYE+N+K+++T  D Y ++RLSIA
Sbjct: 308 RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIA 367

Query: 361 VVVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           VV+++ RL +  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL+    
Sbjct: 368 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGA 427

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA-------KKG 472
           +   V   + D L R   +  NAL  L    L+ + GL  L R  N+  A       + G
Sbjct: 428 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 487

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS-RNLQSRINSYVSKQSDLRL 531
           EV      +P  I  A + G      I   ++  D    S  +L+ R+       + LRL
Sbjct: 488 EVA-----TPNFIGGAESVGEGVQAVIGGPAAYADQMKTSLSDLRQRMR----MPAKLRL 538

Query: 532 LHMIEINEERFAKILRKW 549
             MIE++EER A +L++W
Sbjct: 539 EQMIEMDEERVAAVLKQW 556


>gi|148558201|ref|YP_001258009.1| flagellar MS-ring protein [Brucella ovis ATCC 25840]
 gi|148369486|gb|ABQ62358.1| flagellar M-ring protein FliF [Brucella ovis ATCC 25840]
          Length = 568

 Score =  353 bits (905), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 217/543 (39%), Positives = 325/543 (59%), Gaps = 20/543 (3%)

Query: 17  LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76
           LG  +++ L  V    +   +    ++  P Y+ LYV L   DVNR+ +AL EA I F +
Sbjct: 12  LGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVNRMGLALGEAGIPFDV 71

Query: 77  SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136
             +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S GLTSFMQEITRVRALE
Sbjct: 72  KSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGLTSFMQEITRVRALE 130

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVA 196
           GEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA      +SA++IR LVA
Sbjct: 131 GEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGGFSAESAQSIRQLVA 190

Query: 197 AAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255
           AAVP+LD   VTVLD+ G LL +A E        + S+ Q +   ++ +I KALA +LG+
Sbjct: 191 AAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASHVDDSIRKALAPYLGL 250

Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV 315
            +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  ++ ++A  VEQN+P  
Sbjct: 251 GHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNNRNDNATGVEQNIPQE 310

Query: 316 SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS 375
             +      S E TD++EE +NYE+N+K+++T  D Y ++RLSIAVV+++ RL +  G +
Sbjct: 311 QIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIAVVIDQARLLQTAGTT 370

Query: 376 ADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSR 434
                 +D  + +I  +V+ A G+N+ RGD I +T+++FL+    +   V   + D L R
Sbjct: 371 PPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGADMEPVSAPWTDTLLR 430

Query: 435 HFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA-------KKGEVGGKSILSPPPISS 487
              +  NAL  L    L+ + GL  L R  N+  A       + GEV      +P  I  
Sbjct: 431 QSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAGEVA-----TPNFIGG 485

Query: 488 AVTTGLMPNDNIALDSSNQDIFSHS-RNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546
           A + G      I   ++  D    S  +L+ R+       + LRL  MIE++EER A +L
Sbjct: 486 AESVGEGVQAVIGGPAAYADQMKTSLSDLRQRMR----MPAKLRLEQMIEMDEERVAAVL 541

Query: 547 RKW 549
           ++W
Sbjct: 542 KQW 544


>gi|122065185|sp|Q8YDM4|FLIF_BRUME RecName: Full=Flagellar M-ring protein
          Length = 580

 Score =  352 bits (904), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 221/558 (39%), Positives = 332/558 (59%), Gaps = 23/558 (4%)

Query: 4   LDQLLQFFKSGT--SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
             QL++  K GT   LG  +++ L  V    +   +    ++  P Y+ LYV L   DVN
Sbjct: 10  FQQLIEQLK-GTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 68

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           R+ +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S G
Sbjct: 69  RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 127

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA  
Sbjct: 128 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 187

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHE 240
               +SA++IR LVAAAVP+LD   VTVLD+ G LL +A E        + S+ Q +   
Sbjct: 188 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 247

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           ++ +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  +
Sbjct: 248 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 307

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           + ++A  VEQN+P    +      S E TD++EE +NYE+N+ +++T  D Y ++RLSIA
Sbjct: 308 RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSMTVSTVSDGYSIKRLSIA 367

Query: 361 VVVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           VV+++ RL +  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL++   
Sbjct: 368 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDSAGA 427

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA-------KKG 472
           +   V   + D L R   +  NAL  L    L+ + GL  L R  N+  A       + G
Sbjct: 428 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 487

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS-RNLQSRINSYVSKQSDLRL 531
           EV      +P  I  A + G      I   ++  D    S  +L+ R+       + LRL
Sbjct: 488 EVA-----TPNFIGGAESVGEGVQAVIGGPAAYADQMKTSLSDLRQRMR----MPAKLRL 538

Query: 532 LHMIEINEERFAKILRKW 549
             MIE++EER A +L++W
Sbjct: 539 EQMIEMDEERVAAVLKQW 556


>gi|62317964|ref|YP_223817.1| flagellar MS-ring protein [Brucella abortus bv. 1 str. 9-941]
 gi|68067522|sp|O52069|FLIF_BRUAB RecName: Full=Flagellar M-ring protein
 gi|62198157|gb|AAX76456.1| FliF, flagellar M-ring protein [Brucella abortus bv. 1 str. 9-941]
          Length = 580

 Score =  352 bits (903), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 221/558 (39%), Positives = 331/558 (59%), Gaps = 23/558 (4%)

Query: 4   LDQLLQFFKSGT--SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
             QL++  K GT   LG  +++ L  V    +   +    ++  P Y+ LYV L   DVN
Sbjct: 10  FQQLIEQLK-GTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 68

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           R+ +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S G
Sbjct: 69  RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 127

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA  
Sbjct: 128 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 187

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHE 240
               +SA++IR LVAAAVP+LD   VTVLD+ G LL +A E        + S+ Q +   
Sbjct: 188 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 247

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           ++ +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  +
Sbjct: 248 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 307

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           + ++A  VEQN+P    +      S E  D++EE +NYE+N+K+++T  D Y ++RLSIA
Sbjct: 308 RNDNATGVEQNIPQEQIQNRNGESSTEKMDRREELTNYEVNSKTVSTVSDGYSIKRLSIA 367

Query: 361 VVVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           VV+++ RL +  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL+    
Sbjct: 368 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGA 427

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA-------KKG 472
           +   V   + D L R   +  NAL  L    L+ + GL  L R  N+  A       + G
Sbjct: 428 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 487

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS-RNLQSRINSYVSKQSDLRL 531
           EV      +P  I  A + G      I   ++  D    S  +L+ R+       + LRL
Sbjct: 488 EVA-----TPNFIGGAESVGEGVQAVIGGPAAYADQMKTSLSDLRQRMR----MPAKLRL 538

Query: 532 LHMIEINEERFAKILRKW 549
             MIE++EER A +L++W
Sbjct: 539 EQMIEMDEERVAAVLKQW 556


>gi|118589973|ref|ZP_01547377.1| flagellar M-ring protein [Stappia aggregata IAM 12614]
 gi|118437470|gb|EAV44107.1| flagellar M-ring protein [Stappia aggregata IAM 12614]
          Length = 548

 Score =  352 bits (902), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 218/544 (40%), Positives = 316/544 (58%), Gaps = 30/544 (5%)

Query: 17  LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76
           LG  R++ LA + L  I    A  ++++ P    LY  L+  DV RI  AL +A I F I
Sbjct: 17  LGVRRLVALALIGLATIATVGAGAYYLSRPEQTVLYTGLDGEDVTRIGSALRDAGIPFDI 76

Query: 77  SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136
           +  G+++ V  +   KAR+ LA +GLP  + NSGYELFD++ S GLTSFMQE+TRVRALE
Sbjct: 77  NSEGTAVMVSHAQTAKARMLLAEKGLPRGA-NSGYELFDELGSLGLTSFMQEVTRVRALE 135

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVA 196
           GE+ARTIQ + GI AARVHIV+P+ GSFR+    P+ASV+IR+  P   ++A+AIRHLVA
Sbjct: 136 GELARTIQLMKGIRAARVHIVLPEKGSFRRDQQPPSASVVIRSDVPDDVRTADAIRHLVA 195

Query: 197 AAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255
           A VP +    VTVLD++G +L A  +  +   G+  S+  A+ + I+ NI K L  +LG+
Sbjct: 196 AGVPGMQADKVTVLDTSGGILAAGKDPTKASAGQLASLETAVSNRIQENIRKTLTPYLGL 255

Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV 315
           DNF+ +V AELN D + I E ++DPDS+ ERSIR  ++ + ++ S   +  TVEQN+P  
Sbjct: 256 DNFQVSVAAELNTDRKTIAETIFDPDSRTERSIRTIRENENAQNSSVSAPTTVEQNLPEE 315

Query: 316 SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS 375
                   RS E  +++EE  NYEI++K I T+ D Y+++RLSIAV+V+K RL + LG  
Sbjct: 316 DVSADNGERSSEENERREETVNYEISSKRIETSQDGYRVDRLSIAVLVDKSRLAQSLGGE 375

Query: 376 ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435
             Q ++   L EI  +V+++ GI   RGD + +  +DF++          +S  + L R 
Sbjct: 376 PTQAQMQEQLTEIEALVASSAGIEKERGDLVKVAVVDFVDGGRAMEPIPPISITEYLMRQ 435

Query: 436 FATVINALVFLVGTLLVTFLGLH----ALRRLHNIDDAKKGEVGGKSILSPPPISSAV-- 489
              +INAL  L  ++LV + GL     AL         +  E+G    ++P      V  
Sbjct: 436 SGNIINALAILTVSMLVIWFGLRPAVAALVPQIAKPQVEMAELG----MTPETAEGTVEA 491

Query: 490 ----TTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545
                T LMP D             HS  LQ  +NS  +K +  +L  ++E NEE+ A I
Sbjct: 492 VDGEQTFLMPPD-------------HSDMLQD-LNSRRNKSALRKLESLLEFNEEQSAAI 537

Query: 546 LRKW 549
           LR+W
Sbjct: 538 LRQW 541


>gi|153011515|ref|YP_001372729.1| flagellar MS-ring protein [Ochrobactrum anthropi ATCC 49188]
 gi|151563403|gb|ABS16900.1| flagellar M-ring protein FliF [Ochrobactrum anthropi ATCC 49188]
          Length = 579

 Score =  350 bits (897), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 223/572 (38%), Positives = 333/572 (58%), Gaps = 26/572 (4%)

Query: 4   LDQLLQFFKSGT--SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
             QL++  K GT   LG  +++ L  V    +   +    +++ P Y+ LYV L   DVN
Sbjct: 5   FQQLIEQLK-GTLGKLGARKLIALGLVGAALMGAILYTSIYLSRPSYETLYVGLSRDDVN 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           R+ +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S G
Sbjct: 64  RMGLALGEAGIPFDVKADGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 122

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIVM + GSFR+   +P+ASV+IRA  
Sbjct: 123 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVMAEKGSFRRGDQKPSASVVIRAEG 182

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHE 240
               +SA++IR LVAAAVP+LD   VTVLD+ G+LL +A E        + S+ Q +   
Sbjct: 183 GFAAESAQSIRQLVAAAVPSLDASAVTVLDTNGRLLASAGEAANGAALMTASLEQQVAGN 242

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           ++ +I KALA +LG+ +F+++V A L+ D +QI E  YDP+S+VERS+R+ +++  S  +
Sbjct: 243 VDDSIRKALAPYLGIGHFQTSVQAVLDTDRRQINETTYDPESRVERSVRVVRESGDSRNN 302

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           + ++A  VEQN+P    +      S E TD++EE +NYE+N+K+++T  D Y ++RLSIA
Sbjct: 303 RNDNATGVEQNIPQEEIQNRNGESSTEKTDRREELTNYEMNSKTVSTVSDGYTVKRLSIA 362

Query: 361 VVVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           VV+++ RL E  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL+    
Sbjct: 363 VVIDQARLLETAGTTPPPANFVDQQITKIRDLVATAAGLNADRGDVINVTAVNFLDPAGA 422

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
           +   V   + D + R   + +NAL  L    L+ + GL  L R  N       EV  +  
Sbjct: 423 DMEPVSTPWTDTVLRQSGSYVNALAILAAVGLLIWFGLRPLLRDQNAKPTGT-EVAVRE- 480

Query: 480 LSPPPISSAVTTGLMPN--DNIALDSSNQDIFSHSRNLQSRINSYVSK-------QSDLR 530
                 +S V    MPN     A     Q +         ++ + +S         + LR
Sbjct: 481 ------TSEVA---MPNFVGGQAAGEGVQAVIGGPEAYADQMKTSLSDLRQRMRMPAKLR 531

Query: 531 LLHMIEINEERFAKILRKWARSEIEDRYTQHI 562
           L  MI+++EER A IL++W       R  Q +
Sbjct: 532 LEQMIDMDEERVASILKQWIHETAASREAQPL 563


>gi|306845426|ref|ZP_07478000.1| flagellar M-ring protein FliF [Brucella sp. BO1]
 gi|306274169|gb|EFM55985.1| flagellar M-ring protein FliF [Brucella sp. BO1]
          Length = 575

 Score =  350 bits (897), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 221/558 (39%), Positives = 331/558 (59%), Gaps = 23/558 (4%)

Query: 4   LDQLLQFFKSGT--SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
             QL++  K GT   LG  +++ L  V    +   +    ++  P Y+ LYV L   DVN
Sbjct: 5   FQQLIEQLK-GTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           R+ +AL EA+I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S G
Sbjct: 64  RMGLALGEADIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 122

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           LTSFMQEIT VRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA  
Sbjct: 123 LTSFMQEITHVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 182

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHE 240
               +SA++IR LVAAAVP+LD   VTVLD+ G LL +A E        + S+ Q +   
Sbjct: 183 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALITASLEQQVASH 242

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           ++ +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  +
Sbjct: 243 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 302

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           + ++A  VEQN+P    +      S E TD++EE +NYE+N+K+++T  D Y ++RLSIA
Sbjct: 303 RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIA 362

Query: 361 VVVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           VV+++ RL +  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL+    
Sbjct: 363 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNANRGDVINVTAVNFLDPAGA 422

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA-------KKG 472
           +   V   + D L R   +  NAL  L    L+ + GL  L R  N+  A       + G
Sbjct: 423 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 482

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS-RNLQSRINSYVSKQSDLRL 531
           EV       P  I  A + G      I   ++  D    S  +L+ R+       + LRL
Sbjct: 483 EVA-----MPNFIGGAESVGEGVQAVIGGPAAYADQMKTSLSDLRQRMR----MPAKLRL 533

Query: 532 LHMIEINEERFAKILRKW 549
             MIE++EER A +L++W
Sbjct: 534 EQMIEMDEERVAAVLKQW 551


>gi|239834433|ref|ZP_04682761.1| flagellar M-ring protein FliF [Ochrobactrum intermedium LMG 3301]
 gi|239822496|gb|EEQ94065.1| flagellar M-ring protein FliF [Ochrobactrum intermedium LMG 3301]
          Length = 590

 Score =  347 bits (890), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 219/568 (38%), Positives = 336/568 (59%), Gaps = 12/568 (2%)

Query: 4   LDQLLQFFKSGT--SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
             QL++  K GT   LG  +++ L  V    +   +    +++ P Y+ LYV L   DVN
Sbjct: 10  FQQLIEQLK-GTLGKLGARKLVALGLVGAALMAAILYTSIYLSRPSYETLYVGLSRDDVN 68

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           R+ +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S G
Sbjct: 69  RMGLALGEAGIPFDVKADGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 127

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA  
Sbjct: 128 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 187

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHE 240
               +SA++IR LVAAAVP+LD   VTVLD+ G+LL +A E        + S+ Q +   
Sbjct: 188 GFAAESAQSIRQLVAAAVPSLDASAVTVLDTNGRLLASAGEAANGAALMTASLEQQVAGN 247

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           ++ +I KALA +LG+ +F+++V A L+ D +Q  E ++DP+S+VERS+R+ +++  S  +
Sbjct: 248 VDDSIRKALAPYLGMGHFQTSVQAVLDTDRRQTNETIFDPESRVERSVRVVRESGDSRNN 307

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           + ++A  VEQN+P    +      S E TD++EE +NYE+N+K+++T  D Y ++RLSIA
Sbjct: 308 RNDNATGVEQNIPQEEIQNRNGESSSEKTDRREELTNYEMNSKTVSTVSDGYTVKRLSIA 367

Query: 361 VVVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           VV+++ RL E  G +      +D  +A+I  +V+ A G+N+ RGD I +T+++FL+    
Sbjct: 368 VVIDQARLLETAGTTPPPANFVDQQIAKIRDLVATAAGLNADRGDVINVTAVNFLDPAGA 427

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK-- 477
           +   V   + D + R   + +NAL  L    L+ + GL  L R  N   A   EV  +  
Sbjct: 428 DMEPVSTPWTDTVLRQSGSYVNALAILAAVGLLIWFGLRPLLRDQNARTAGT-EVAIRET 486

Query: 478 SILSPPPI--SSAVTTGLMPNDNI-ALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
           S ++ P      A   G+     + A+    +      +   S +   +   + LRL  M
Sbjct: 487 SDVAAPDFVGGQAAGEGVQGAQGVQAVIGGPEAYADQMKTSLSDLRQRMRMPAKLRLEQM 546

Query: 535 IEINEERFAKILRKWARSEIEDRYTQHI 562
           I+++EER A +L++W       R  Q +
Sbjct: 547 IDMDEERVAAVLKQWIHETAASREGQPL 574


>gi|328545497|ref|YP_004305606.1| flagellar M-ring protein [polymorphum gilvum SL003B-26A1]
 gi|326415238|gb|ADZ72301.1| Flagellar M-ring protein [Polymorphum gilvum SL003B-26A1]
          Length = 546

 Score =  346 bits (888), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 210/536 (39%), Positives = 320/536 (59%), Gaps = 16/536 (2%)

Query: 17  LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76
           LG  R++ LA + +  I       ++++ P    LY  L+  DV+RI  AL +A I + +
Sbjct: 17  LGTRRLIALALIGVATIATVGLGAYYLSRPQQTTLYTGLQGEDVSRIGSALQDAGIPYDV 76

Query: 77  SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136
           S +G+++ V      +AR+ LA +GLP  + ++GYELFD + S GLTSFMQE+TRVRALE
Sbjct: 77  SSDGTAVLVNHGAAARARMLLAERGLPRGA-DAGYELFDDLGSLGLTSFMQEVTRVRALE 135

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVA 196
           GE+ARTIQ + G+ AARVHIV+P+ GSFR+    P+ASV+IR+  P   ++A+AIRHLV+
Sbjct: 136 GELARTIQLMQGVRAARVHIVLPEKGSFRRDQQPPSASVVIRSDVPDDLRTADAIRHLVS 195

Query: 197 AAVPNLDMGDVTVLDSTGKLLTANEMERNI-LGKSLSIVQAIQHEIEMNINKALAAFLGV 255
           AAVP +    VTVLD++G LL A +   N   G+  S+  A+   I+ NI K L  +LG+
Sbjct: 196 AAVPGMSADKVTVLDTSGGLLAAGKDPANASAGQIASLEAAVSGRIQENIRKTLTPYLGL 255

Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV 315
           DNF+ +V A+LN D ++I E +YDP+S+VERS+R  +  + S+ S  E+  TV+QN+P  
Sbjct: 256 DNFQVSVAADLNTDRRRIAETIYDPESRVERSVRTLRQNEMSQNSSTETPTTVQQNLPDE 315

Query: 316 SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS 375
           +       RS E   ++EE  NYEI++K+I T+ D Y +ERLSIAV+V++ RL   LG S
Sbjct: 316 TVTAENGERSSEENQRREETVNYEISSKTIETSQDGYSVERLSIAVLVDRARLEASLGGS 375

Query: 376 ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435
            D   + + L EI ++V+++ G++SRRGD I ++ +DF+           +S  ++L R 
Sbjct: 376 PDPDTVAAQLVEIEQLVASSAGVSSRRGDVIKVSVVDFVNGGRAMEPVPPMSVSELLIRQ 435

Query: 436 FATVINALVFLVGTLLVTFLGLH-ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLM 494
              +INA   L    L+ + GL  AL  L     A   E+G  ++++          GL 
Sbjct: 436 SGNLINAFAILTVAGLLIWFGLRPALAVLVPQKSAAPAEIGELAMMTE-------GEGLA 488

Query: 495 PNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH-MIEINEERFAKILRKW 549
              + A   +  D   HS  LQ   N     QS L+ L  +++++E++ A IL++W
Sbjct: 489 GEFSEARQLAGPD---HSGMLQDLTNKL--NQSPLKKLESLLDLDEQQSAAILKQW 539


>gi|114705807|ref|ZP_01438710.1| flagellar M-ring protein [Fulvimarina pelagi HTCC2506]
 gi|114538653|gb|EAU41774.1| flagellar M-ring protein [Fulvimarina pelagi HTCC2506]
          Length = 551

 Score =  345 bits (886), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 203/522 (38%), Positives = 315/522 (60%), Gaps = 33/522 (6%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           +F++    + LY  L+  DV RI  AL+EA I F ++  G ++  P S  G+AR+ LA +
Sbjct: 43  YFLSRADMETLYSGLDRQDVTRIGAALTEAGIPFDVTAEGDAVQTPFSQTGEARMLLAEK 102

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP S  N+GYELFD + S GLTSFMQE+TRVRALEGEIARTIQ+++ I AARVH+V+ D
Sbjct: 103 GLPRSE-NAGYELFDNIGSIGLTSFMQEVTRVRALEGEIARTIQTLANIRAARVHVVLAD 161

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN 220
            GSFR+   +P+ASV+IR      + SA AIR LVAAA+P +   +VTVL+S G LL + 
Sbjct: 162 EGSFRRERRKPSASVVIRTDGSEDFGSASAIRSLVAAAIPGMTPQEVTVLNSDGTLLASG 221

Query: 221 EME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
           E    +   K   I + +   +E +I + LA +LGV NF+++V A LN D QQI E ++D
Sbjct: 222 EEGVSSAPSKLFGIEKIMSGSVEESIRRTLAPYLGVGNFQTSVTASLNTDRQQISERIFD 281

Query: 280 PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK---EEQS 336
           P+S+VERS+R  K+  +S+ +    AV +EQ++   +D     P    ++D+K   EE +
Sbjct: 282 PESRVERSVRSMKEMDQSQNTTQNEAVGIEQDI-QAADEVEGAPGGESSSDEKERREELT 340

Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT 396
           NYEIN K+I TT + Y++E+LSIAVV+N+ RL   +G +A    ID+ +AEI  +V++A+
Sbjct: 341 NYEINEKTIQTTSEGYEVEKLSIAVVINRQRLAAAIGENATDTDIDARIAEIESLVASAS 400

Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQ----VSFMDILSRHFATVINALVFLVGTLLV 452
           G +  RGD + +T++DF++     +G+++      F ++  R   T+INAL  LV  +LV
Sbjct: 401 GYSEARGDQLKVTAVDFVD----AAGSLEPIPGPGFSEMFMRQSGTLINALTILVVAVLV 456

Query: 453 TFLGLH-ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTG----LMPNDNIALDSSNQD 507
            + GL  A+R L   + A+       SI +   +   + +G    L P +        +D
Sbjct: 457 IWFGLKPAIRALAAPEPAESEADNDNSIETLQRVGEGMESGSVGSLAPANGT--QGFVED 514

Query: 508 IFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549
           +   +R+ Q+R+ +            +++I+E + A +L++W
Sbjct: 515 LSGAARSPQARLEA------------LVDIDENQAANVLKQW 544


>gi|158422251|ref|YP_001523543.1| flagellar MS-ring protein [Azorhizobium caulinodans ORS 571]
 gi|158329140|dbj|BAF86625.1| flagellar M-ring protein [Azorhizobium caulinodans ORS 571]
          Length = 559

 Score =  340 bits (872), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 210/561 (37%), Positives = 315/561 (56%), Gaps = 13/561 (2%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M   +QL +   +   LG  R++ L  +    + +      +++ P  + LY  L   DV
Sbjct: 1   MNAREQLERLLSNLRQLGARRLVALGLIAFTVMAVIGLGAMYLSQPERETLYANLSRDDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            RI  AL +A I F +S +G+++ V  S   +AR+ LA +GLP SSS SGYELF+ V SF
Sbjct: 61  TRIGGALKDAGIPFDVSSDGATVLVAHSDTARARMLLAVKGLPQSSS-SGYELFNDVRSF 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+T+VRALEGEIARTIQ++ GI AARVHIV+PD GSFR+     TASV+IR  
Sbjct: 120 GLTSFMQEVTKVRALEGEIARTIQTMKGIKAARVHIVLPDRGSFRRDQQLATASVVIRTE 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIVQAIQH 239
           N +   +A+AIRHLVAAA+P + + +VTVL++ G +LT+ E        +  ++ Q +  
Sbjct: 180 NSADSSTAQAIRHLVAAAIPGMKLDNVTVLNTEGTILTSTEDGVTAAATRKSALQQQVNR 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           E E  I + L  FLG+ NF  +V + LN D   I E  YDP SK ERS R+ K+  +++ 
Sbjct: 240 ETEEKIRRTLTPFLGLGNFEVSVSSRLNTDRSTINETTYDPASKAERSTRVVKEQGQTQN 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
              +   TV+QN+P           + EN  ++EE +N+EI+T+   T  D Y +E LSI
Sbjct: 300 RSQQPNTTVQQNIPPPPGTPGTGTENNENNQRREELTNFEISTRQSQTVRDAYSVENLSI 359

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AV+VNK RLT     + D   +++   EI ++VS+A G +  RGD + + ++ F +    
Sbjct: 360 AVLVNKERLTG----TKDGTPLETQTYEIEQLVSSAAGFDKERGDKLKVVAVPFADGGNN 415

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH-ALRRLHNIDDAKKGEVGGKS 478
                 +++ ++L R   T++NA+  LV  +L+ + GL  ALR +    +  + E    +
Sbjct: 416 MEPIPPLTWSELLFRQAGTIVNAVTILVVAILLIWFGLRPALRAILARPEPDEAEAIEAA 475

Query: 479 ILSP----PPISSAVTTGLMPN--DNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
           +L+     PP +   +T   PN  D +   +      S   NL   + S V++    RL 
Sbjct: 476 MLAAPTELPPDTVLPSTAQNPNTLDGVTTLAGFTGGDSGPVNLIGDVTSKVNRSPQRRLE 535

Query: 533 HMIEINEERFAKILRKWARSE 553
            MIE +EE+ A ILR+W   E
Sbjct: 536 QMIEYDEEQAAAILRQWLHQE 556


>gi|218512857|ref|ZP_03509697.1| flagellar MS-ring protein [Rhizobium etli 8C-3]
          Length = 316

 Score =  337 bits (863), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 166/307 (54%), Positives = 232/307 (75%), Gaps = 3/307 (0%)

Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL- 217
           P++G+FRK   +PTASVMIRA   +   +A +IRHLVA+AVP LD+ DVT+LDS G+LL 
Sbjct: 1   PEVGNFRKAEQKPTASVMIRASAATGRSAATSIRHLVASAVPGLDVDDVTILDSAGQLLA 60

Query: 218 TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
           + +E   + L +SL+IVQ +Q E+E NI+KALA FLG+DNFRS+V A+LN D QQI+E  
Sbjct: 61  SGDEASNSSLNRSLNIVQNVQQEVESNIDKALAPFLGMDNFRSSVTADLNTDAQQIQETT 120

Query: 278 YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRK--VPLPRSLENTDKKEEQ 335
           YDP+SKVERS+R +K+AQ+S+  Q ++A TVEQN+P  +        P S + +DK+EEQ
Sbjct: 121 YDPESKVERSVRSTKEAQQSQQKQSDNATTVEQNIPQAAPDAGGASGPESQDKSDKREEQ 180

Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395
           +NYEIN+++ ATT ++YK+E+LSIAVVVNKGR+ +++G  ADQ KID+YLAE+ KIV++A
Sbjct: 181 TNYEINSRTTATTRNSYKVEKLSIAVVVNKGRIAKMVGEPADQAKIDAYLAEMQKIVASA 240

Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455
            GI+++RGD +T+T+MDFLENQL    T  V  MD+LSR+ A +IN+L F+    +V ++
Sbjct: 241 AGIDAKRGDVVTVTAMDFLENQLLEDATGGVRVMDMLSRNLAGIINSLAFVAVAFVVVWM 300

Query: 456 GLHALRR 462
           GL  L R
Sbjct: 301 GLRPLVR 307


>gi|2832233|gb|AAC01568.1| M-ring [Brucella abortus]
          Length = 540

 Score =  336 bits (862), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 198/470 (42%), Positives = 293/470 (62%), Gaps = 6/470 (1%)

Query: 4   LDQLLQFFKSGT--SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
             QL++  K GT   LG  +++ L  V    +   +    ++  P Y+ LYV L   DVN
Sbjct: 10  FQQLIEQLK-GTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 68

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           R+ +AL EA I F +   GSSI VP      AR++LA +GLP+S+ N+GYELFD + S G
Sbjct: 69  RMGLALGEAGIPFDVKSYGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 127

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA  
Sbjct: 128 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 187

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHE 240
               +SA++IR LVAAAVP+LD   VTVLD+ G LL +A E        + S+ Q +   
Sbjct: 188 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 247

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           ++ +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  +
Sbjct: 248 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 307

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           + ++A  VEQN+P    +      S E TD++EE +NYE+N+K+++T  D Y ++RLSIA
Sbjct: 308 RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIA 367

Query: 361 VVVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           VV+++ RL +  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL+    
Sbjct: 368 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGA 427

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
           +   V   + D L R   +  NAL  L    L+ + GL  L R  N+  A
Sbjct: 428 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPA 477


>gi|218681104|ref|ZP_03529001.1| flagellar MS-ring protein [Rhizobium etli CIAT 894]
          Length = 282

 Score =  336 bits (861), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 169/273 (61%), Positives = 214/273 (78%), Gaps = 2/273 (0%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           +IL  V  V I + +AA  FVN P  + LYV L+  D+N+IS+AL+EANI+F++  +GSS
Sbjct: 1   MILGGVGAVSIAIVLAAALFVNKPAQETLYVGLDQPDLNQISMALAEANINFQVGTDGSS 60

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           ISVP+ M GKAR+ LA +GLP+S+ N+GYELFD V S GLTSFMQE+TRVRALEGEIART
Sbjct: 61  ISVPAGMTGKARLMLAERGLPNSA-NAGYELFDNVGSLGLTSFMQEVTRVRALEGEIART 119

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNL 202
           IQSISGI AARVHIVMP++G+FRK   +PTASVMIRA   +   +A +IRHLVA+AVP L
Sbjct: 120 IQSISGITAARVHIVMPEVGNFRKQEQKPTASVMIRASAVTGRSAATSIRHLVASAVPGL 179

Query: 203 DMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSA 261
           D+ DVT+LDS G+LL + +   N  L +SL IVQ +Q E+E NI+KALA FLG+DNFRS+
Sbjct: 180 DVDDVTILDSAGQLLASGDDASNSSLNRSLGIVQNVQQEVESNIDKALAPFLGMDNFRSS 239

Query: 262 VVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
           V A+LN D QQI+E  YDP+SKVERS+R +K+A
Sbjct: 240 VTADLNTDAQQIQETTYDPESKVERSVRSTKEA 272


>gi|27381975|ref|NP_773504.1| flagellar MS-ring protein [Bradyrhizobium japonicum USDA 110]
 gi|27355145|dbj|BAC52129.1| flagellar M-ring protein [Bradyrhizobium japonicum USDA 110]
          Length = 553

 Score =  335 bits (859), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 173/442 (39%), Positives = 277/442 (62%), Gaps = 2/442 (0%)

Query: 18  GRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS 77
           G  R++ L  +    ++  +   ++++ P ++ LY  L   DV R+  AL E NI F ++
Sbjct: 30  GPRRLMALGLIGFAVLVTVVGGAYYLSRPEFETLYTGLSREDVTRMGAALREQNIAFDVN 89

Query: 78  DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137
             G ++SV  S   +AR+ LA +GLP+S+ NSGYELFDK+ S GLTSFMQE+T++RALEG
Sbjct: 90  TAGDAVSVRPSQTMQARMLLAEKGLPTSA-NSGYELFDKIGSLGLTSFMQEVTKLRALEG 148

Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAA 197
           EIART+Q + G+ AARVHIVMP  GSFR     P+ASV++R       ++A++IRHLVAA
Sbjct: 149 EIARTVQLMKGVKAARVHIVMPVRGSFRATQQPPSASVVLRTDGAIEARTAQSIRHLVAA 208

Query: 198 AVPNLDMGDVTVLDSTGKLLTANEMERNIL-GKSLSIVQAIQHEIEMNINKALAAFLGVD 256
           A+P +    VTVLD+ G +L A E E      K  S+ + +   ++ NI KAL  +LG+D
Sbjct: 209 AIPGMSRDKVTVLDADGSMLLAEEDEATAAPTKMASLQKTVGGMVQENIRKALTPYLGLD 268

Query: 257 NFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVS 316
           NF  +V  +L+ D +Q  E VYDP+ + ERS+R  ++ + S+ +   +  TV+QN+P   
Sbjct: 269 NFEVSVAPQLSTDKRQTNETVYDPEGRAERSVRNVREKESSQNADRSTPTTVQQNLPDQQ 328

Query: 317 DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA 376
                   S E+  ++E+ +N+E+++K+  T  D Y +++L IAV+VN+ RL   LG  +
Sbjct: 329 VNAGGSKNSSEDKTRREDVTNFEVSSKTTTTVSDGYLVKKLFIAVLVNRARLVADLGDKS 388

Query: 377 DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHF 436
           +Q  +DS LAEI+++ + A G++ +RGD I +T++DF+E     +    +SF++++++  
Sbjct: 389 NQAIVDSKLAEISQLAATAGGLDKQRGDQIQVTAVDFIEGSRELAPVPPISFVEMINKQL 448

Query: 437 ATVINALVFLVGTLLVTFLGLH 458
            +VINA+  L    ++ + GL 
Sbjct: 449 GSVINAVTILAVASMLVWFGLR 470


>gi|323139667|ref|ZP_08074709.1| flagellar M-ring protein FliF [Methylocystis sp. ATCC 49242]
 gi|322395099|gb|EFX97658.1| flagellar M-ring protein FliF [Methylocystis sp. ATCC 49242]
          Length = 565

 Score =  333 bits (854), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 202/565 (35%), Positives = 321/565 (56%), Gaps = 28/565 (4%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +D++     +  +LG  ++  L     + + +   + ++++ P ++ LY  L+  DV+RI
Sbjct: 13  MDRITLLLDNLKALGTRKLAALGLTFALVVAIVSISAYYLSRPTFEVLYAGLDREDVSRI 72

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    I F I+  G+++SVP     +AR+ LA +GLP S+ N+GYELFDKV + GLT
Sbjct: 73  GSVLKSTGIPFDINTEGNAVSVPYGQTAQARMLLAERGLPQSA-NAGYELFDKVGALGLT 131

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
           SFMQE+TRVRALEGE+ARTIQ I G+ AARVHIVMPD GSFR+    P+ASV+IR   P 
Sbjct: 132 SFMQEVTRVRALEGELARTIQLIRGVKAARVHIVMPDEGSFRRAKQPPSASVIIRTEGPD 191

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEI 241
              +A+AIRHLVA+++P +++  VTVL++ G +L++++ +    +  K+L++ + IQ +I
Sbjct: 192 DTSAAQAIRHLVASSLPGMNVDQVTVLNTDGMILSSSDGDATDAVPVKTLTLEKNIQKDI 251

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           + NI + L  +L + NF+  V A +N D +QI E +YDPDSKVERS+R  K++ RS+ S 
Sbjct: 252 QDNIRRTLTPYLRLPNFQVTVRARVNTDRKQINETIYDPDSKVERSVRTVKESSRSQDSS 311

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
             +A TV  N+P          +S +   K EE +NYE+++K++ T    Y +E LS+AV
Sbjct: 312 SAAATTVTNNIPQNGVNNADGKQSNDENKKNEELTNYEMSSKTVTTVSGGYNIEHLSVAV 371

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           ++N+    E       Q  ID  L EI +++S+A G+   RGD + +T++DF+ N+   +
Sbjct: 372 LINRSAFAEPNKEPPKQEAIDRQLKEIEQLISSAAGLKKERGDALKVTAVDFMFNEHEMT 431

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR-LHNIDDAKKGE------V 474
                 F+ +L  H  +++N +  L    LV   GL   RR L      ++ E      +
Sbjct: 432 PVESPGFVAMLGSHLGSILNMIAALGIAALVVIFGLAPARRALLAESSTERTEPPPLIGM 491

Query: 475 GGKSILSP---PPISSAVT--TGLMPNDNIALDSSN--QDIFSHSRNLQSRINSYVSKQS 527
           G +S  SP    P    +    G  P   IA+      +DI    +++  R         
Sbjct: 492 GDQSFESPTFEAPTFDGIPGLAGATPGGAIAMSGPTLLEDISERRQDIARR--------- 542

Query: 528 DLRLLHMIEINEERFAKILRKWARS 552
             +L  +I+ +E + A IL++W RS
Sbjct: 543 --KLEELIQNDEAQAAAILKQWMRS 565


>gi|115523187|ref|YP_780098.1| flagellar MS-ring protein [Rhodopseudomonas palustris BisA53]
 gi|115517134|gb|ABJ05118.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris BisA53]
          Length = 544

 Score =  331 bits (849), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 190/527 (36%), Positives = 301/527 (57%), Gaps = 40/527 (7%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           ++++ P ++ LY  L   DV R+S AL +ANI F ++  G ++ V      +AR  LA +
Sbjct: 41  YYISRPEFNVLYSGLSREDVTRVSAALRDANIAFDVNATGDTVLVRPGQAAQARTLLADK 100

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLPSS+S  GYELFDK+ S GLTSFMQE+TRVRALEGEIARTIQ I G+ AARVHIVMP 
Sbjct: 101 GLPSSTSG-GYELFDKIGSLGLTSFMQEVTRVRALEGEIARTIQVIKGVKAARVHIVMPA 159

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN 220
            GSFR+    P+ASV++R   P+  ++A ++RHLVAAAVP +    VTVLDS G LL ++
Sbjct: 160 RGSFRREQPVPSASVVLRTEGPAEARTARSVRHLVAAAVPGMTPDKVTVLDSDGSLLGSD 219

Query: 221 EMERNILGKSLSIVQ-AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
           E        +L+ +Q  +   I+ N++KAL  +LG+DNF  +V  +L+ D +Q  E +YD
Sbjct: 220 EDGVGSTPTTLANLQRVVSRSIQDNVSKALTPYLGLDNFEVSVATQLSTDKRQTNETIYD 279

Query: 280 PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYE 339
           PDS+V+RS+R  ++ + S++   ++  TV+QN+P           S E   ++E+ +N+E
Sbjct: 280 PDSRVQRSVRAVREKETSQSLDRQTPTTVQQNLPDQQVNAGNGNNSNEEKQRREDVTNFE 339

Query: 340 INTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN 399
           +++K+I TT D + + ++ +AV+VN+ RL   LG  A +  I++ +AEI ++ + A GI+
Sbjct: 340 VSSKTITTTSDGFAVTKMFLAVLVNRPRLVASLGDKASEAAIEAKVAEIAQLAATAAGID 399

Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA 459
             RGD I +++++F+E     +    VSF D+L R   +V++A+  L    ++ + GL  
Sbjct: 400 RPRGDQIQVSAVEFIEGGRDLAPVPGVSFTDVLMRQAGSVVSAVTILAVAGMLIWFGLR- 458

Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL-------------DSSNQ 506
                                   P  + V  G   N+   L              ++ Q
Sbjct: 459 ------------------------PAINTVLAGTKSNEASQLLMNEGAGLLAGAGGAAAQ 494

Query: 507 DIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                + NL   ++         RL  +++++E++ A IL++W R E
Sbjct: 495 LGHEATPNLVGDVSMRAQHAPQRRLEQIVQLDEKQAAAILKQWIRQE 541


>gi|170748099|ref|YP_001754359.1| flagellar MS-ring protein [Methylobacterium radiotolerans JCM 2831]
 gi|170654621|gb|ACB23676.1| flagellar M-ring protein FliF [Methylobacterium radiotolerans JCM
           2831]
          Length = 546

 Score =  331 bits (849), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 199/556 (35%), Positives = 314/556 (56%), Gaps = 22/556 (3%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           + L + + +   LG  R++ L  V L   +      ++++ P  + LY  L   DV+R+ 
Sbjct: 5   EHLQKLWTNILDLGPRRLIALGLVGLTVFLAVGLGAYYLSRPLRETLYSGLSRDDVSRMG 64

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
            AL +A I F IS +G+S+ V      +AR+ LA +GLP S   +GYELF+ + S GLTS
Sbjct: 65  AALKDAGIPFDISADGTSVLVSYGQTAQARMLLAEKGLPQSG-KAGYELFNDLGSLGLTS 123

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           FMQ+ITRVRALEGEIARTIQ++  + AARVHIVMPD GSFR+     +ASV++R    + 
Sbjct: 124 FMQDITRVRALEGEIARTIQTLKSVKAARVHIVMPDPGSFRREQQPASASVVVRTEPAND 183

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK-LLTANEMERNILGKSLSIVQAIQHEIEM 243
              A AIR LVAAA+P +    VTVL++ G  LL  ++      G+  ++ Q++  EI+ 
Sbjct: 184 ATVAPAIRQLVAAAIPGMKPDKVTVLNTDGTVLLAGDDATTAPAGRLANLEQSVNREIQD 243

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           NI + L  +LG +NF  +VVA LN D  +  E +++PD KVERS+R  K++  S+   P+
Sbjct: 244 NIRRTLTPYLGPNNFEVSVVARLNTDKTKTDETIFNPDQKVERSLRTIKESDSSQNRAPQ 303

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
              T +QN+P    R      S   + ++EE +N+EI++K++ T  D Y ++ LS+AV+V
Sbjct: 304 KPTTAQQNLPDQRVRSEGAENSSAESQRREELTNFEISSKTVQTVSDGYSIKTLSVAVLV 363

Query: 364 NKGRLTEVLGRSADQG---KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           N+ RL E L   A  G    +D  +AEI ++V++A G+N  RGD + + ++ F++     
Sbjct: 364 NRSRL-EALAGGAKGGTAPPLDPQVAEIEQLVTSAAGVNRARGDQLKVAAVSFIDEGQPL 422

Query: 421 SGTVQVSFMDILSRHFATVIN-ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
           +    + F D+L R   T+IN A + +VG LL+ F     LR   N   A+  E G +  
Sbjct: 423 APAPALGFTDVLMRQSGTLINAATILIVGCLLIWF----GLRPAVNAILARPAETGTELA 478

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
           L+ P   S +             S+ +   S   +L   +  ++++    +L  ++E++E
Sbjct: 479 LATPDAGSGLDG----------PSAEKGGTSPEPSLIEDLTEHMARSPIRKLEQLVELDE 528

Query: 540 ERFAKILRKW-ARSEI 554
           E+ A IL++W  R E+
Sbjct: 529 EQVANILKQWLTREEV 544


>gi|217976233|ref|YP_002360380.1| flagellar MS-ring protein [Methylocella silvestris BL2]
 gi|217501609|gb|ACK49018.1| flagellar M-ring protein FliF [Methylocella silvestris BL2]
          Length = 546

 Score =  330 bits (847), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 181/453 (39%), Positives = 282/453 (62%), Gaps = 2/453 (0%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           QL Q + +   LG  R++ LA + +    +   A +F++ P  + LY  L+  DV+RI  
Sbjct: 6   QLEQIWANLLKLGSRRLIALAMIGVSIFAMTGLAGYFLSRPALETLYAGLDRQDVSRIGA 65

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
           AL EA+I F ++  G++I V      +AR+ LA +GLP+S  N+G ELFDK+ S GLT+F
Sbjct: 66  ALKEADIAFDVNAEGNTILVRYGETARARMLLAEKGLPNSP-NAGNELFDKLGSLGLTTF 124

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
           MQE+TRVRALEGE+ARTIQ + G+ AARVH+VMPD GSFR+    P+ASV+IR       
Sbjct: 125 MQEVTRVRALEGELARTIQLMRGVKAARVHVVMPDEGSFRRTREPPSASVVIRTEMADDV 184

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEIEMN 244
            +A++IRHLVA+AVP + M +VTVL++ G LL + N++  +  G  L++ + +  EI  N
Sbjct: 185 GAAKSIRHLVASAVPGMTMEEVTVLNTEGVLLASGNDLADSAPGGMLTLERTVSQEILDN 244

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           I K L  +LG+ NF+ +V   LN D +Q  E +Y+PDS+VERS+++++  Q S+ S  +S
Sbjct: 245 IRKTLTPYLGLRNFQVSVATRLNTDKKQTNETIYNPDSRVERSVKVTRQNQLSQNSTAQS 304

Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
             TVE+N+P  + +     +S E + K EE +NYE+++K+IATT   + ++ +S+AV++N
Sbjct: 305 PTTVERNLPQENVKADDGKQSNEESKKSEELTNYEVSSKTIATTSGGFAIDNISVAVLIN 364

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424
           +  L   LG       +   L E+ +++++A G    RGD I I+++DF++         
Sbjct: 365 RASLMASLGDRPAPEALGKQLGELEQLIASAAGARKERGDAIKISAVDFIDAGRDLEPQP 424

Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457
                ++L R    V+NA+  LV TLL+ + GL
Sbjct: 425 PPPVSELLMRQSGNVLNAVTILVVTLLLIWFGL 457


>gi|296447983|ref|ZP_06889889.1| flagellar M-ring protein FliF [Methylosinus trichosporium OB3b]
 gi|296254493|gb|EFH01614.1| flagellar M-ring protein FliF [Methylosinus trichosporium OB3b]
          Length = 551

 Score =  330 bits (847), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 200/563 (35%), Positives = 324/563 (57%), Gaps = 28/563 (4%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +D+  Q   +   LG  ++  LA +  + + +     ++V+ P ++ LY  L+  DV+RI
Sbjct: 1   MDRFNQLRDNLIGLGPRKLSALALIFTLVLAITGLGAYYVSRPDFEVLYSGLDREDVSRI 60

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L  + + F I+  G+++ V      +AR+ LA +GLP S+ N+GYELFDKV S GLT
Sbjct: 61  GAVLKSSGVAFDINPEGNAVLVRYGQTAQARMLLAERGLPQSA-NAGYELFDKVGSLGLT 119

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
           SFMQE+TRVRALEGE+ARTIQ I G+ AARVHIV+PD GSFR++   P+ASV+IR  +P 
Sbjct: 120 SFMQEVTRVRALEGELARTIQLIRGVKAARVHIVLPDEGSFRRVRQPPSASVVIRTESPD 179

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEI 241
             K+A+AIRHLVAA++P + +  VTVL++ G LL+A++ +       K+L++ + +  +I
Sbjct: 180 DSKAAQAIRHLVAASIPGMTVDQVTVLNTDGMLLSASDGDATDAAPAKTLTLEKTVSKDI 239

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           + NI + L  +L + NF+ +V A +N D +Q  E ++DP+S+VERS+R+ K+   S+ + 
Sbjct: 240 QDNIRRTLTPYLRLANFQVSVRARINTDRKQTNETIFDPESRVERSVRVVKENSTSQNNS 299

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKK-EEQSNYEINTKSIATTHDNYKLERLSIA 360
              A +VE+N+P    +     +   + +KK EE +N+E++TK++ T    Y LE LSIA
Sbjct: 300 TSQAASVERNVPQEKPQAGGEGKQSNDENKKSEELTNFELSTKTVTTVSGGYTLENLSIA 359

Query: 361 VVVNKGRLTEVLGRSADQGK---IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           V+VN+G L    G   D  K   ++  L EI ++V++A G+   RGDT+ ++++DF  N+
Sbjct: 360 VLVNRGSLA---GSGKDAPKPEALERQLKEIEQLVASAAGVRKDRGDTVKVSAVDFAINE 416

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL------HNIDDAKK 471
              +      + + L+    +VINA   ++ TLL+ F GL    R         ++ A  
Sbjct: 417 NDLAPVEPAGWSEALTHQLGSVINAGALILVTLLLVFFGLRPASRALLAEAPAPMETALA 476

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN-QDIFSHSRNLQSRINSYVSKQSDLR 530
            +VG   + + P I        MP     +D+   +DI    +  Q +           +
Sbjct: 477 DDVGPPLLGAEPSIELPFAPMEMPQFTGQMDTGLIEDIGGREKFNQQK-----------K 525

Query: 531 LLHMIEINEERFAKILRKWARSE 553
           L  +IE +E + A IL++W  +E
Sbjct: 526 LEQLIEADEMQAAAILKQWMYAE 548


>gi|90418370|ref|ZP_01226282.1| putative flagellar M-ring protein [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90338042|gb|EAS51693.1| putative flagellar M-ring protein [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 563

 Score =  330 bits (845), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 207/557 (37%), Positives = 329/557 (59%), Gaps = 11/557 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           +A+  +  Q   + T+LG  R+  L  V L+ + L     ++++ P  + LY  L+ +DV
Sbjct: 3   LAVGGKAQQLLTNLTALGPRRLGALGLVGLLVVALVGLGSYYLSRPDMETLYSGLDRTDV 62

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            RI  AL+EA I F +   G +I  P S    AR+ LA +GLP S  N+GYELFD + S 
Sbjct: 63  TRIGAALTEAGIPFDVDSKGDAILTPFSQTAPARMLLAEKGLPRSE-NAGYELFDNLGSI 121

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQEITRVRALEGEIARTIQ++  + AARVHIV+PD GSFR+   +P+ASV++R  
Sbjct: 122 GLTSFMQEITRVRALEGEIARTIQTLRNVRAARVHIVLPDKGSFRREQQKPSASVVVRTE 181

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239
           N + + SA+AIR LVA+A+P++   +VT+L++ G LL + +E       K   I   +  
Sbjct: 182 NGNDFGSAQAIRSLVASAIPSMTPEEVTILNADGTLLASGDEGVSAAPTKLFGIESVVSK 241

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           +IE +I + LA +LG+ NF+++VVA L+ D +QI E ++DP+S+VERS R  ++  +S  
Sbjct: 242 DIEQSIRRTLAPYLGIGNFQTSVVARLDTDRKQISERIFDPESRVERSTRTIRENNQSAN 301

Query: 300 SQPESAVTVEQNMPHVSDRKV---PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
              E+ V VEQ++  V           +S E T+++EE +NYEIN K+I+TT D Y++ER
Sbjct: 302 RASETPVGVEQDVREVDAAPAGGGGGEQSSEETERREELTNYEINEKTISTTSDGYQVER 361

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           LS+AVVV++ R+ E +G +    +ID+ + EI  +V++A+G ++ RGD I +T++DF+ +
Sbjct: 362 LSVAVVVDRKRVLEAIGENPTDAQIDARIGEIKALVASASGFSADRGDQIEVTAVDFIAS 421

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH-ALRRLHNIDDAKKGEVG 475
                     S  ++  R   T+INAL  L   +++ + GL  A+R +  +  A+   + 
Sbjct: 422 DDALEPIPAPSLGEMFMRQSGTLINALTILAVAIMLIWFGLKPAVRAIAAMPAAEGTTLA 481

Query: 476 GKSILSPPPI---SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
                  P +   + A++  L+  +N+  DS       +       +N  V      RL 
Sbjct: 482 ALDDDEMPELDDDARALSESLL--ENLNYDSDPAGGSGNEIGFLDDLNFNVGNSPRARLE 539

Query: 533 HMIEINEERFAKILRKW 549
            +++ NEE  A ++++W
Sbjct: 540 RLLDHNEEHAATVMKQW 556


>gi|170741410|ref|YP_001770065.1| flagellar MS-ring protein [Methylobacterium sp. 4-46]
 gi|168195684|gb|ACA17631.1| flagellar M-ring protein FliF [Methylobacterium sp. 4-46]
          Length = 572

 Score =  329 bits (844), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 200/593 (33%), Positives = 314/593 (52%), Gaps = 72/593 (12%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M+  +Q  + + +   LG  R+  L  + L   +      ++++ P  + LY  L   DV
Sbjct: 1   MSGREQAERLWNNIIELGARRLAALGIIGLTVFLAVGLGAYYLSRPAQETLYGGLSRDDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            RI   L +ANI F +S +G+++ VP     +AR+ LA +GLP SS  SGYELF+ + S 
Sbjct: 61  GRIGSVLKDANIPFDVSTDGTAVLVPYGHTAQARMLLAEKGLPQSS-KSGYELFNDLGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEIARTIQ++ G+ AARVHIV+PD GSFR+    P+ASV++R  
Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQTMKGVKAARVHIVLPDRGSFRREQQPPSASVVVRTE 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239
                  A+AIRHLVA+A+P +    VTV+ + G LL + +++     GK  ++ + +  
Sbjct: 180 PADDGSGAQAIRHLVASAIPGMKPERVTVIGTDGTLLLSGDDVGNAPTGKMANLEKLVNR 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           EI+ NI + L  +LGV NF  +V A LN D     E +++PD +VERS++ +++ + S+ 
Sbjct: 240 EIQDNIRRTLTPYLGVGNFEVSVAARLNTDKTSTNETIFNPDQRVERSVKATRETENSQN 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
              +   T +QN+P    R      S   T K+E+ +NYEI++K+I T  D Y ++++S+
Sbjct: 300 RSSQRPTTAQQNLPDQRTRSDGNDTSSTETQKREDLTNYEISSKTIQTVSDGYGIKQISV 359

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AV+VNK RL+ + G +A    ID  + EI ++V++A G +  RGD + + ++ F+ +   
Sbjct: 360 AVLVNKSRLSSLAGPNAPPAAIDQQIGEIEQLVASAAGFSKERGDHVKVAAVGFVNDGAP 419

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH-ALRRLHNIDDAKK------- 471
                 +S  ++L R  AT+INA   LV   L+ + GL  ALR +  +  A++       
Sbjct: 420 LEPVPPLSLTEVLMRQSATLINAATILVVASLLIWFGLRPALRAILEVPAAEQEIAALAA 479

Query: 472 -----------------------------------GEVGGKSILSPPPISSAVTTGLMPN 496
                                              G   G + L PP ++S +       
Sbjct: 480 EGAAGAVPALPGAEAGSAAAGLLEGSPEAAALAAAGGTPGPAQLGPPVMASLID------ 533

Query: 497 DNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549
                            +L +R+NS   K    +L  MIE +EE+ A IL++W
Sbjct: 534 -----------------DLTNRMNSSPQK----KLEQMIEFDEEQAANILKRW 565


>gi|90422618|ref|YP_530988.1| flagellar MS-ring protein [Rhodopseudomonas palustris BisB18]
 gi|90104632|gb|ABD86669.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris BisB18]
          Length = 544

 Score =  324 bits (830), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 191/541 (35%), Positives = 310/541 (57%), Gaps = 20/541 (3%)

Query: 17  LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76
           LG  R+ +LA V L          ++++ P ++ LY  L   D+ R+S  L +AN+ F +
Sbjct: 17  LGPRRLTVLAMVGLAVFFGVGGGAYYLSRPEFNVLYSGLSREDITRVSAVLRDANVPFDV 76

Query: 77  SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136
           +  G +I V      +AR  LA +GLPSS+S  GYELFDK+ S GLTSFMQE+TRVRALE
Sbjct: 77  NATGDTILVRPGQAAQARTLLADKGLPSSTSG-GYELFDKIGSLGLTSFMQEVTRVRALE 135

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVA 196
           GEIARTIQ I G+ AARVHIVMP  GSFR+  A PTASV++R   P+  K+A ++RHLVA
Sbjct: 136 GEIARTIQVIKGVKAARVHIVMPARGSFRREQAPPTASVVLRTDGPADAKTARSVRHLVA 195

Query: 197 AAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ-AIQHEIEMNINKALAAFLGV 255
           AAVP +    VTVLDS G LL A++        +++ +Q  +   I+ N++KAL  +LG+
Sbjct: 196 AAVPGMTPDKVTVLDSDGSLLGADDDGTGTTPTTMANLQRVVSRLIQDNVSKALTPYLGL 255

Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV 315
           DNF  +V  +L+ D +Q  E VYDP+S+V+RS+R  ++ + S++   ++  TV+QN+P  
Sbjct: 256 DNFEVSVATQLSTDKRQTNETVYDPESRVQRSVRAVRERETSQSLDRQTPTTVQQNLPDQ 315

Query: 316 SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS 375
                    S +   ++E+ +NYE+++K+  T  D Y + ++ +AV+VN+ RL   LG  
Sbjct: 316 QLNAGGGKNSNDEKQRREDVTNYEVSSKTTTTVSDGYVVNKMFLAVLVNRPRLIASLGDK 375

Query: 376 ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435
             +  +++ +AEI+++ + A G++  RGD I +++++F+E     +    ++F ++L R 
Sbjct: 376 VSESAMEAKVAEISQLAATAAGLDRPRGDQIQVSAVEFIEGARDLAPVPGITFTEVLMRQ 435

Query: 436 FATVINALVFL-VGTLLVTFLGLHALRRLHNI--DDAKKGEVGGKSILSPPPISSAVTTG 492
               ++A+  L V  +L+ F     LR   N+    +K  E           +  A    
Sbjct: 436 SGNFVSAITILAVAGMLIWF----GLRPAINVVLASSKSSEGAPLLAAEAAALLGADAAV 491

Query: 493 LMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
                  A+ +  QD+   +++   +           RL  +++++E++ A IL++W R 
Sbjct: 492 AAQIAREAMPNLVQDVSRRAQHAPQK-----------RLEQIVQLDEKQAAAILKQWIRQ 540

Query: 553 E 553
           E
Sbjct: 541 E 541


>gi|188579876|ref|YP_001923321.1| flagellar MS-ring protein [Methylobacterium populi BJ001]
 gi|179343374|gb|ACB78786.1| flagellar M-ring protein FliF [Methylobacterium populi BJ001]
          Length = 570

 Score =  323 bits (829), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 183/527 (34%), Positives = 300/527 (56%), Gaps = 22/527 (4%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           ++++ P  + LY  L   DV+RI   L +  I F +S +G+++ V      +AR+ LA +
Sbjct: 41  YYLSRPAQETLYTGLSREDVSRIGGVLKDNGIPFDVSSDGTAVLVSFGHTAQARMLLAEK 100

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP SS  SGYELF+ + S G+TSFMQE+TRVRALEGEIARTIQ + G+ AARVH+V+PD
Sbjct: 101 GLPQSS-KSGYELFNDLGSLGMTSFMQEVTRVRALEGEIARTIQGMKGVRAARVHLVLPD 159

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK-LLTA 219
            GSFR+     +ASV++R         A+AIR LVA+A+P +    VTV+ S G  LL  
Sbjct: 160 RGSFRRDQQPASASVVVRTEPADDVSGAQAIRQLVASAIPGMKPDRVTVIGSEGTVLLAG 219

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
           ++      GK  ++ +++  E++ NI + L+ +LGV NF  +V  +LN D     E +Y+
Sbjct: 220 DDAGTAPTGKMATLEKSVSREMQDNIRRTLSPYLGVGNFEVSVATQLNTDKTSTNETIYN 279

Query: 280 PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYE 339
           PD +VERS+R  ++++ ++    +   + ++N+P    R     +S   + KKE+ +NYE
Sbjct: 280 PDQRVERSVRSVRESENAQNRNSQRPTSAQENLPDQRTRSDGNDQSSNESSKKEDLTNYE 339

Query: 340 INTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN 399
           I+ K++ T  D Y + RLS+AV+VN+ RLT + G   D+  +D  +AEI ++V +A G +
Sbjct: 340 ISQKTVQTVSDGYAIRRLSVAVLVNRSRLTALAGPD-DKAALDKQIAEIEELVGSAAGFS 398

Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH- 458
             RGDTI + ++ F+ +         +S  D++ +   T+INA   LV   L+ + GL  
Sbjct: 399 KERGDTIKVAAVGFVNDGQPLEPVPPLSLTDVMMKQSGTLINAATILVVAGLLIWFGLRP 458

Query: 459 ALRRLHNIDDAKKGEVGGKSILSP---PPISSAVTTGLMPNDNIALDSSNQDI------- 508
           ALR +    +A + EV   ++  P   P +++ + +GL  + N+AL +    +       
Sbjct: 459 ALRAILATPEAAQSEVA--ALAGPEGAPALAAGMASGLAADGNMALAAPGTALPGAVGAG 516

Query: 509 ------FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549
                       L   +   +++    RL  +I+I+EE+ A +L++W
Sbjct: 517 EAAKLPAPGVAGLLEELEDKMARSPQKRLEQLIDIDEEQVAAVLKRW 563


>gi|254473325|ref|ZP_05086722.1| flagellar M-ring protein FliF [Pseudovibrio sp. JE062]
 gi|211957441|gb|EEA92644.1| flagellar M-ring protein FliF [Pseudovibrio sp. JE062]
          Length = 562

 Score =  321 bits (822), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 201/566 (35%), Positives = 334/566 (59%), Gaps = 29/566 (5%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           MA  +   + + +   LG  R+++LA + L   +   AA + ++ P  + LY  LE  DV
Sbjct: 1   MAARENAEKIYSNLAELGAKRLMVLAFIGLFTFVAIGAAAYLLSRPEQEVLYANLERDDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +I +AL  + I F +S +GS+ISV      +AR+ LA +GLP  S  +GYELFD++ S 
Sbjct: 61  TQIGMALQASGIPFDVSADGSAISVGVGATARARMLLAEKGLPRGS-GAGYELFDEMGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQ +T++RALEGE+AR++QS+ G+ AARVH+V+P+  +FR+   +PTASV+IR  
Sbjct: 120 GLTSFMQSVTKIRALEGEVARSVQSMQGVKAARVHLVLPEKATFRRENQKPTASVLIRTE 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI-LGKSLSIVQAIQH 239
                  A++IR+LVAAAVP L    VTVLD+ G+LL A E  ++   G+   +   +  
Sbjct: 180 GIQTNSIAQSIRYLVAAAVPGLTAEAVTVLDTEGQLLAAGEDAQSASTGRKAMLESNLAS 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
             E  I +ALA +LGV+NF  +V A +N D Q++ E  YDP+++VERS R+ ++   S+ 
Sbjct: 240 RKENAIRQALAPYLGVNNFEVSVSASVNTDNQRVSETSYDPETRVERSFRVVRENATSQN 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           +  E+  TVEQN+P  +       RS E  +++EE +NYEI+++++ T  D+Y++ER+SI
Sbjct: 300 ASLENPTTVEQNLPEEAVSSQSGERSSEENERREELTNYEISSRTVETIFDDYRIERMSI 359

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSY-----------LAEINKIVSAATGINSRRGDTITI 408
           AV+VN+ RL E + R  +  K D+            + EI +I++ A G+++ RGD +++
Sbjct: 360 AVLVNRDRLVEEMSRRVEGQKGDAVVEGEAADLTAKVEEIEEIIATAAGVDTARGDKVSV 419

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR--LHNI 466
           ++++F+      +   + ++ D+L R+  +V+NA   L+ TL++ + GL       +   
Sbjct: 420 SAVNFVLAGQQLAAIPERTWQDVLMRNMGSVVNAGAILIVTLMIIWFGLRPAVAFLIPKT 479

Query: 467 DDAKKG-EVGGKSILSPPPISSAVTTGLMPNDNIAL-DSSNQDIFSHSRNLQSRINSYVS 524
           +  ++G  VG  S       S+AV  G +  ++  L D SN D  S        +++ V 
Sbjct: 480 EVVEEGLPVGANS------NSAAVRDGEIEGEDGQLPDYSNGDGLSG-----EGVDATVV 528

Query: 525 KQSDLRLLH-MIEINEERFAKILRKW 549
            + +LR L   +E+++ + A IL++W
Sbjct: 529 NRDNLRKLERAVEMDDMQAAIILKQW 554


>gi|182679604|ref|YP_001833750.1| flagellar MS-ring protein [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|182635487|gb|ACB96261.1| flagellar M-ring protein FliF [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 547

 Score =  318 bits (815), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 201/560 (35%), Positives = 317/560 (56%), Gaps = 31/560 (5%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M + +Q+ + + +   LG  R++ LA V +    +   A +F++ P  + LY  L+  DV
Sbjct: 1   MTVREQIERLWANLLKLGTKRLITLAVVGVSVFAMTGLAGYFLSRPALEVLYSGLDRQDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           +RI+ AL EA+I F ++ +G+S+ V      +AR+ LA +GLP+S  N+G ELFDK+ S 
Sbjct: 61  SRIASALKEADIPFDVNADGNSVLVRFGETARARMLLAEKGLPNSP-NAGNELFDKLGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGE+ARTIQ + G+ AARVHIVMPD GSFR+    P+ASV++R  
Sbjct: 120 GLTSFMQEVTRVRALEGELARTIQLMHGVKAARVHIVMPDEGSFRRTRQPPSASVVVRME 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQ 238
           +     +A+AIRHLVA+AVP + + +VTVL++ G LL   A+ ++    G  + + +A+ 
Sbjct: 180 SNDDPSAAKAIRHLVASAVPGMTVEEVTVLNTEGVLLASGADTVDGAPSGM-IMLEKAVS 238

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
            EI  NI K L  +LG+ NF+ +V A LN D +Q  E +Y+PDSKVERSI +++  Q S+
Sbjct: 239 REIIDNIRKTLTPYLGLRNFQISVAARLNTDKRQTNETIYNPDSKVERSIHVTRQNQNSQ 298

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
            S  +S  +VE+N+P  + R     +S E + K++E +NYEI++K + T    Y ++ LS
Sbjct: 299 NSTVQSPTSVERNLPQENARSDDGKQSTEESQKRDELTNYEISSKVVNTVSGGYGIDNLS 358

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           +AV+VN+  L   LG       +   + EI  +V++A G +  RGD + I+++DF++   
Sbjct: 359 VAVLVNRASLISSLGEKPTPDALAKQMNEIEMLVASAAGAHKERGDIVKISAVDFIDPSH 418

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR--LHN-------IDDA 469
                   S  ++  R    ++NA   LV  +L+ + GL    +  L N       ID  
Sbjct: 419 ELEPQPPPSIGEMFLRQSTNLVNAATILVVAILLIWFGLRPATKAILANTRSTATAIDLR 478

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
            + E         PP     +    PN         +D+ S  R+   +           
Sbjct: 479 DEEEFQALEDDDAPPALPVWSPPSEPN-------LIEDLTSTPRHTPQK----------- 520

Query: 530 RLLHMIEINEERFAKILRKW 549
           RL  ++E +E++ A +L++W
Sbjct: 521 RLEQIVEYDEQQAAAVLKQW 540


>gi|254559216|ref|YP_003066311.1| flagellar M-ring protein FliF [Methylobacterium extorquens DM4]
 gi|254266494|emb|CAX22258.1| Flagellar M-ring protein FliF [Methylobacterium extorquens DM4]
          Length = 559

 Score =  315 bits (807), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 182/514 (35%), Positives = 294/514 (57%), Gaps = 7/514 (1%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           ++++ P  + LY  L   DV+RI   L +  I F +S +G+++ V      +AR+ LA +
Sbjct: 41  YYLSRPAQEMLYTGLSREDVSRIGGVLKDNGIPFDVSSDGAAVLVSFGHTAQARMLLAEK 100

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP SS  SGYELF+ + S G+TSFMQE+TRVRALEGEIARTIQ + G+ AARVH+V+PD
Sbjct: 101 GLPQSS-KSGYELFNDLGSLGMTSFMQEVTRVRALEGEIARTIQGMKGVRAARVHLVLPD 159

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK-LLTA 219
            GSFR+     +ASV++R         A+AIR LVA+A+P +    VTV+ S G  LL  
Sbjct: 160 RGSFRRDQQPASASVVVRTEPADDTSGAQAIRQLVASAIPGMKPDRVTVIGSEGTVLLAG 219

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
           ++      GK  ++ +++  E++ NI + LA +LGV NF  +V  +LN D     E +++
Sbjct: 220 DDAGTAPTGKMATLEKSVSREMQDNIRRTLAPYLGVGNFEISVATQLNTDKTSTNETIFN 279

Query: 280 PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYE 339
           PD +VERS+R  ++++ ++    +   + ++N+P    R     +S   + KKE+ +NYE
Sbjct: 280 PDQRVERSVRSVRESENAQNRNSQRPTSAQENLPDQRTRSDGNDQSSNESSKKEDLTNYE 339

Query: 340 INTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN 399
           I+ K++ T  D Y + RLS+AV+VN+ RLT + G   D+  +D  +AEI ++V +A G +
Sbjct: 340 ISQKTVQTVSDGYAIRRLSVAVLVNRSRLTALAGPD-DKASLDKQIAEIEELVGSAAGFS 398

Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH- 458
             RGDTI + ++ F+ +         +S  D++ +   T+INA   LV   L+ + GL  
Sbjct: 399 KERGDTIKVAAVGFVNDGQPMEPVPPLSLTDVMMKQSGTLINAATILVVAGLLIWFGLRP 458

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI---FSHSRNL 515
           ALR +    +  + EV   + L   P+ +A  T  +     AL  S++           L
Sbjct: 459 ALRAILATPETAQSEVAALAGLEGAPVLAADGTMALAAPGAALPGSSEAAKLPAPGVAGL 518

Query: 516 QSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549
              +   +++    RL  +I+I+EE+ A +L++W
Sbjct: 519 LEELEDKMARSPQKRLEQLIDIDEEQVAAVLKRW 552


>gi|300024598|ref|YP_003757209.1| flagellar M-ring protein FliF [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299526419|gb|ADJ24888.1| flagellar M-ring protein FliF [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 561

 Score =  314 bits (805), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 193/562 (34%), Positives = 307/562 (54%), Gaps = 23/562 (4%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           Q    + S   LGR R++ L +   +   L     +F +   ++ LYV L   D++ +  
Sbjct: 5   QFQNLYSSLKGLGRQRLMALGAAGFLVFALISIGSYFASRSSFETLYVGLTPPDISSMGR 64

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L++A I F  S +G+ + V      +AR  LA +GLP S  N+GYELFDK+ + GLTSF
Sbjct: 65  ELAQAGIPFEASLDGTKLGVAVGQAEQARALLAEKGLPGSP-NAGYELFDKLGALGLTSF 123

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
           MQE+TRVRALEGE++RTIQ + GI AARVH+ +PD    R     PTASV+I+    S  
Sbjct: 124 MQEVTRVRALEGELSRTIQYLKGIRAARVHLYLPDQNGLRTKKQTPTASVVIKTDVASDA 183

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQAIQHEIEMN 244
            +A AI+HL+AAA+P++   +V V+ + G LL        ++  + L + + I  +++ +
Sbjct: 184 TAAPAIKHLIAAAIPDMKPDEVQVIGTDGTLLGGSGSPSGDVPVQMLDLERTISTQVQDS 243

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           + +AL+ +LG+DNF  + +A LN+D  Q  E  YDP+SKVERS R+ K+AQ S      +
Sbjct: 244 VRRALSPYLGIDNFEVSAIARLNIDKHQTTETKYDPESKVERSTRVIKEAQSSTDGSGRT 303

Query: 305 AVTVEQNMPHVSDRKVPLPRSLENT----DKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
            V+VEQN+P+ +      P + E      D+KEE +NYEI++ S +TT + YK+  +S+A
Sbjct: 304 DVSVEQNIPNEA------PTTKEQNKRAQDRKEETTNYEISSHSASTTSEGYKVNNISLA 357

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           VVVNK R+ E++G+ A    I+  +AEI K+  +A G++++RGD I++ +++F ++   +
Sbjct: 358 VVVNKKRIAEIIGKDAKTEDIEKQVAEIEKVALSAAGLDTKRGDRISVAAVEFAQSPFGD 417

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI- 479
                  +  +L     T I +L  L+   +V F G     RL     A     G  ++ 
Sbjct: 418 ITAPSTDWSVMLMGLAGTGIKSLTILLIAAIVVFAGFKPAMRLLLTGSAATAIEGNGAVA 477

Query: 480 -LSPPPISSA--VTTGL-MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL------ 529
            L+ PPI+ A  VT  L MP     L     + F             +S    L      
Sbjct: 478 ALAGPPIADAGGVTAPLDMPEMASPLLEPGANPFDSDFGSSGFAGDGMSFGRSLAFGPVE 537

Query: 530 RLLHMIEINEERFAKILRKWAR 551
           +L  +I+ +E++   I++ W +
Sbjct: 538 KLGAIIDRDEDQATAIMKHWVK 559


>gi|240137205|ref|YP_002961674.1| Flagellar M-ring protein FliF [Methylobacterium extorquens AM1]
 gi|240007171|gb|ACS38397.1| Flagellar M-ring protein FliF [Methylobacterium extorquens AM1]
          Length = 559

 Score =  311 bits (798), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 182/514 (35%), Positives = 292/514 (56%), Gaps = 7/514 (1%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           ++++ P  + LY  L   DV+RI   L +  I F +S +G+++ V      +AR+ LA +
Sbjct: 41  YYLSRPAQEMLYTGLSREDVSRIGGVLKDNGIPFDVSSDGTAVLVSFGHTAQARMLLAEK 100

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP SS  SGYELF+ + S G+TSFMQE+TRVRALEGEIARTIQ + G+ AARVH+V+PD
Sbjct: 101 GLPQSS-KSGYELFNDLGSLGMTSFMQEVTRVRALEGEIARTIQGMKGVRAARVHLVLPD 159

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK-LLTA 219
            GSFR+     +ASV++R         A+AIR LVA+A+P +    VTV+ S G  LL  
Sbjct: 160 RGSFRRDQQPASASVVVRTEPADDTSGAQAIRQLVASAIPGMKPDRVTVIGSEGTVLLAG 219

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
           ++      GK  ++ +++  E++ NI + LA +LGV NF  +V  +LN D     E +++
Sbjct: 220 DDAGTAPTGKMATLEKSVSREMQDNIRRTLAPYLGVGNFEISVATQLNTDKTSTNETIFN 279

Query: 280 PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYE 339
           PD +VERS+R  ++++ ++    +   + ++N+P    R     +S   + KKE+ +NYE
Sbjct: 280 PDQRVERSVRSVRESENAQNRNSQRPTSAQENLPDQRTRSDGNDQSSNESSKKEDLTNYE 339

Query: 340 INTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN 399
           I+ K++ T  D Y + RLS+AV+VN+ RLT + G   D+  +D  +AEI ++V +A G +
Sbjct: 340 ISQKTVQTVSDGYAIRRLSVAVLVNRSRLTALAGPD-DKASLDKQIAEIEELVGSAAGFS 398

Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH- 458
             RGDTI + ++ F+ +         +S  D++ +   T+INA   LV   L+ + GL  
Sbjct: 399 KERGDTIKVAAVGFVNDGQPMEPVPPLSLTDVMMKQSGTLINAATILVVAGLLIWFGLRP 458

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS---RNL 515
           ALR +    +  + EV   +     P  +A  T  +     AL  S +     S     L
Sbjct: 459 ALRAILATPETAQSEVAALAGPEGAPALAADGTMALAAPGAALPGSGEAAKLPSPGVAGL 518

Query: 516 QSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549
              +   +++    RL  +I+I+EE+ A +L++W
Sbjct: 519 LEELEDKMARSPQKRLEQLIDIDEEQVAAVLKRW 552


>gi|218528674|ref|YP_002419490.1| flagellar MS-ring protein [Methylobacterium chloromethanicum CM4]
 gi|218520977|gb|ACK81562.1| flagellar M-ring protein FliF [Methylobacterium chloromethanicum
           CM4]
          Length = 559

 Score =  311 bits (796), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 181/514 (35%), Positives = 291/514 (56%), Gaps = 7/514 (1%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           ++++ P  + LY  L   DV+RI   L +  I F +S +G+++ V      +AR+ LA +
Sbjct: 41  YYLSRPAQEMLYTGLSREDVSRIGGVLKDNGIPFDVSSDGTAVLVSFGHTAQARMLLAEK 100

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP SS  SGYELF+ + S G+TSFMQE+TRVRALEGEIARTIQ + G+ AARVH+V+PD
Sbjct: 101 GLPQSS-KSGYELFNDLGSLGMTSFMQEVTRVRALEGEIARTIQGMKGVRAARVHLVLPD 159

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK-LLTA 219
            GSFR+     +ASV++R         A+AIR LVA+A+P +    VTV+ S G  LL  
Sbjct: 160 RGSFRRDQQPASASVVVRTEPADDTSGAQAIRQLVASAIPGMKPDRVTVIGSEGTVLLAG 219

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
           ++      GK  ++ +++  E++ NI + LA +LGV NF  +V  +LN D     E +++
Sbjct: 220 DDAGTAPTGKMATLEKSVSREMQDNIRRTLAPYLGVGNFEISVATQLNTDKTSTNETIFN 279

Query: 280 PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYE 339
           PD +VERS+R  ++++ ++    +   + ++N+P    R     +S   + KKE+ +NYE
Sbjct: 280 PDQRVERSVRSVRESENAQNRNSQRPTSAQENLPDQRTRSDGNDQSSNESSKKEDLTNYE 339

Query: 340 INTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN 399
           I+ K++ T  D Y + RLS+AV+VN+ RLT + G   D+  +D  +AEI ++V +A G +
Sbjct: 340 ISQKTVQTVSDGYAIRRLSVAVLVNRSRLTALAGPD-DKASLDKQIAEIEELVGSAAGFS 398

Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH- 458
             RGDTI + ++ F+ +         +S  D++ +   T+INA   LV   L+ + GL  
Sbjct: 399 KERGDTIKVAAVGFVNDGQPMEPVPPLSLTDVMMKQSGTLINAATILVVAGLLIWFGLRP 458

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI---FSHSRNL 515
           ALR +    +  + EV   +     P  +A  T  +     AL  S +           L
Sbjct: 459 ALRAILATPETAQSEVAALAGPEGAPALAADGTMALAAPGAALPGSGEAAKLPAPGVAGL 518

Query: 516 QSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549
              +   +++    RL  +I+I+EE+ A +L++W
Sbjct: 519 LEELEDKMARSPQKRLEQLIDIDEEQVAAVLKRW 552


>gi|163850071|ref|YP_001638114.1| flagellar MS-ring protein [Methylobacterium extorquens PA1]
 gi|163661676|gb|ABY29043.1| flagellar M-ring protein FliF [Methylobacterium extorquens PA1]
          Length = 559

 Score =  310 bits (795), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 181/529 (34%), Positives = 290/529 (54%), Gaps = 37/529 (6%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           ++++ P  + LY  L   DV+RI   L +  I F +S +G+++ V      +AR+ LA +
Sbjct: 41  YYLSRPAQEMLYTGLSREDVSRIGGVLKDNGIPFDVSSDGTAVLVSFGHTAQARMLLAEK 100

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP SS  SGYELF+ + S G+TSFMQE+TRVRALEGEIARTIQ + G+ AARVH+V+PD
Sbjct: 101 GLPQSS-KSGYELFNDLGSLGMTSFMQEVTRVRALEGEIARTIQGMKGVRAARVHLVLPD 159

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK-LLTA 219
            GSFR+     +ASV++R         A+AIR LVA+A+P +    VTV+ S G  LL  
Sbjct: 160 RGSFRRDQQPASASVVVRTEPADDTSGAQAIRQLVASAIPGMKPDRVTVIGSEGTVLLAG 219

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
           ++      GK  ++ +++  E++ NI + LA +LGV NF  +V  +LN D     E +++
Sbjct: 220 DDAGTAPTGKMATLEKSVSREMQDNIRRTLAPYLGVGNFEISVATQLNTDKTSTNETIFN 279

Query: 280 PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYE 339
           PD +VERS+R  ++++ ++    +   + ++N+P    R     +S   + KKE+ +NYE
Sbjct: 280 PDQRVERSVRSVRESENAQNRNSQRPTSAQENLPDQRTRSDGNDQSSNESSKKEDLTNYE 339

Query: 340 INTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN 399
           I+ K++ T  D Y + RLS+AV+VN+ RLT + G   D+  +D  +AEI ++V +A G +
Sbjct: 340 ISQKTVQTVSDGYAIRRLSVAVLVNRSRLTALAGPD-DKASLDKQIAEIEELVGSAAGFS 398

Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH- 458
             RGDTI + ++ F+ +         +S  D++ +   T+INA   LV   L+ + GL  
Sbjct: 399 KERGDTIKVAAVGFVNDGQPMEPVPPLSLTDVMMKQSGTLINAATILVVAGLLIWFGLRP 458

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLM------------------PNDNIA 500
           ALR +    +  + EV   ++  P    +    G M                  P   IA
Sbjct: 459 ALRAILATPETAQSEVA--ALAGPEGAPALAADGTMALAAPGAALPGSGEAAKLPAPGIA 516

Query: 501 LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549
                         L   +   +++    RL  +I+I+EE+ A +L++W
Sbjct: 517 -------------GLLEELEDKMARSPQKRLEQLIDIDEEQVAAVLKRW 552


>gi|312115289|ref|YP_004012885.1| flagellar M-ring protein FliF [Rhodomicrobium vannielii ATCC 17100]
 gi|311220418|gb|ADP71786.1| flagellar M-ring protein FliF [Rhodomicrobium vannielii ATCC 17100]
          Length = 547

 Score =  297 bits (761), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 175/466 (37%), Positives = 272/466 (58%), Gaps = 10/466 (2%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           MAI DQ+     S   LG  R+  L +V +  + +     ++V+    D LYV L  SDV
Sbjct: 13  MAIRDQIDALRVSLLGLGARRLAALVAVGVAIVAIVGVGSYYVSRAEKDVLYVGLTASDV 72

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           +RI   L EA I F  +   + I V      +AR+ LA +GLP++++ +GYELFDK+ S 
Sbjct: 73  SRIGAVLKEAGIPFDSNSEANKIFVNRGDTARARMILAERGLPNNAT-AGYELFDKLGSL 131

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQ ITRVRALEGEIARTI+++  + +ARVH+VM D GSFR+     TASV+++  
Sbjct: 132 GLTSFMQNITRVRALEGEIARTIEAMRAVNSARVHLVMADAGSFRREPQAATASVVVKPA 191

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-GKSLSIVQAIQH 239
             +   SA AIR +VA+AVP +    V+VL + G +L+A +    +  GK L + + +  
Sbjct: 192 G-AEPPSAAAIRQIVASAVPGMKPDHVSVLSTDGTILSAGDDGPGVASGKMLDLEKQVSR 250

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           EI  NI K L   LG+ NF ++V   LN+D +QI E  +DP+SK ERS R  K++  S+ 
Sbjct: 251 EINDNIRKTLTPVLGLGNFETSVTVRLNLDRKQINETAFDPESKAERSTRTVKESSNSQN 310

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           +  +  ++VEQN+P       P  +S   +++KEE +NYE+++KS+ T  + Y++E +++
Sbjct: 311 TNQKWNISVEQNIPTDQQNTKPSDQSKRASERKEETTNYEVSSKSVTTQSEGYRVENIAV 370

Query: 360 AVVVNKGRLTEVLGRSADQGKI--DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           AVV+N+  L      +AD  K   D  +  + ++VS+A G++S RGD  T+ ++DF    
Sbjct: 371 AVVLNRKPLLA----AADSAKTAPDEQIRVVERLVSSAAGLDSLRGDKATVVALDFAGGN 426

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
            F+     ++F D +     + + A   L+ T+L   +GL    R+
Sbjct: 427 EFDQAP-SLTFWDHVMEGLGSYVIAAALLISTILFVAVGLRPSLRM 471


>gi|304392498|ref|ZP_07374438.1| flagellar M-ring protein FliF [Ahrensia sp. R2A130]
 gi|303295128|gb|EFL89488.1| flagellar M-ring protein FliF [Ahrensia sp. R2A130]
          Length = 535

 Score =  289 bits (739), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 178/517 (34%), Positives = 283/517 (54%), Gaps = 41/517 (7%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           +F+  P ++ LYV L   D+NRI  ALSEA I + +S +G+S+ V +    +AR  LA +
Sbjct: 50  WFLAQPTFETLYVGLARDDINRIGPALSEAGIGYDVSSDGTSVLVQAGQAARARSILAER 109

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP SS  SGYELFD + S GLTSFMQE+TRVRALEGEIAR+++SI GI  ARVHIV PD
Sbjct: 110 GLPRSS-GSGYELFDNLGSLGLTSFMQEVTRVRALEGEIARSVRSIEGIQGARVHIVQPD 168

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TA 219
             SF     + +ASV+I++    + + A+A+RHLVAAAVP L +G+VTVLDS+G++L + 
Sbjct: 169 RSSFSARNRQASASVLIQSNGRDIDRVAKAVRHLVAAAVPQLAVGNVTVLDSSGQVLASG 228

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
           +E   +    +L + + +++ +  NI + L   LG  NFR AV A L+ D +   E +YD
Sbjct: 229 DEPASSTADGALGMQRLVENRLSENIARVLTPQLGASNFRVAVHAVLDTDQRTTSETIYD 288

Query: 280 PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV-PLPRSLENTDKKEEQSNY 338
           P+S+VERSI++ +      +SQ     TVEQ++P     +    P S   ++++EE +NY
Sbjct: 289 PESRVERSIKVVRTQDTDTSSQGGQTTTVEQDIPEEQPAQANAGPSSNRESERREETTNY 348

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E+++K I++  + Y + +L+ +VVVN          SA   +    L  +     AA G+
Sbjct: 349 EMSSKRISSVRNGYSVSKLTASVVVNA---------SALGAEPAVRLEALRASTQAAAGV 399

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           ++ RGD I +++++F+      + T     +   +    +V+ AL FL+  +LV    + 
Sbjct: 400 DAGRGDVIDVSAVEFVTAADL-AATTSSPLLLQATAQLGSVVKALAFLIALVLVLRFAIK 458

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
            L        +    V G+  ++ P  ++ +   + P  + A                  
Sbjct: 459 PLVAAAASALSPPQSVEGEGAIAGPSNNTRLAGPMGPPPSAA------------------ 500

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
                      RL  +++ + ER A++LR W R+  E
Sbjct: 501 ----------DRLAALVDQDSERAAEVLRSWVRAGEE 527


>gi|46204512|ref|ZP_00209445.1| COG1766: Flagellar biosynthesis/type III secretory pathway
           lipoprotein [Magnetospirillum magnetotacticum MS-1]
          Length = 435

 Score =  272 bits (695), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 150/383 (39%), Positives = 227/383 (59%), Gaps = 9/383 (2%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           ++++ P  + LY  L   DV+RI   L +  I F +S +G+++ V      +AR+ LA +
Sbjct: 41  YYLSRPAQETLYTGLSREDVSRIGGVLKDNGIPFDVSSDGTAVLVSFGHTAQARMLLAEK 100

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP SS  SGYELF+ + S G+TSFMQE+TRVRALEGEIARTIQ + G+ AARVH+V+PD
Sbjct: 101 GLPQSS-KSGYELFNDLGSLGMTSFMQEVTRVRALEGEIARTIQGMKGVRAARVHLVLPD 159

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK-LLTA 219
            GSFR+     +ASV++R         A+AIR LVA+A+P +    VTV+ S G  LL  
Sbjct: 160 RGSFRREQQPASASVVVRTEPADDVSGAQAIRQLVASAIPGMKPDRVTVIGSEGTVLLAG 219

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
           ++      GK  ++ +++  E++ NI + LA +LGV NF  +V  +LN D     E +Y+
Sbjct: 220 DDAGTAPTGKMATLEKSVSREMQDNIRRTLAPYLGVGNFEVSVATQLNTDKTSTNETIYN 279

Query: 280 PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYE 339
           PD +VERS+R  ++ + ++    +   + ++N+P    R     +S   + KKE+ +NYE
Sbjct: 280 PDQRVERSVRSVRENENAQNRNSQRPTSAQENLPDQRTRSDGNDQSSNESSKKEDLTNYE 339

Query: 340 INTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN 399
           I+ K+I T  D Y + RLS+AV+VN+ RLT + G   D+  ID  +AEI  I S      
Sbjct: 340 ISQKTIQTVSDGYAIRRLSVAVLVNRSRLTAMAG-PDDKAGIDKQIAEIEXIGSGLPXPR 398

Query: 400 S------RRGDTITITSMDFLEN 416
                   RGD I + ++ F+ +
Sbjct: 399 PRXLPARERGDIIKVAAVGFIND 421


>gi|265985824|ref|ZP_06098559.1| flagellar M-ring protein FliF [Brucella sp. 83/13]
 gi|264664416|gb|EEZ34677.1| flagellar M-ring protein FliF [Brucella sp. 83/13]
          Length = 324

 Score =  262 bits (670), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 145/314 (46%), Positives = 206/314 (65%), Gaps = 5/314 (1%)

Query: 4   LDQLLQFFKSGT--SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
             QL++  K GT   LG  +++ L  V    +   +    ++  P Y+ LYV L   DVN
Sbjct: 10  FQQLIEQLK-GTLGKLGARKLIALGLVGAALMGAILYTSIYLGCPSYETLYVGLSRDDVN 68

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            + +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S G
Sbjct: 69  CMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 127

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA  
Sbjct: 128 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 187

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHE 240
               +SA++IR LVAAAVP+LD   VTVLD+ G LL +A E        + S+ Q +   
Sbjct: 188 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVAGH 247

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           ++ +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S VERS+R+ +++  S  +
Sbjct: 248 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESCVERSVRVVRESGDSRNN 307

Query: 301 QPESAVTVEQNMPH 314
           + ++A  VEQN+P 
Sbjct: 308 RNDNATGVEQNIPQ 321


>gi|288962688|ref|YP_003452982.1| flagellar M-ring protein [Azospirillum sp. B510]
 gi|288914954|dbj|BAI76438.1| flagellar M-ring protein [Azospirillum sp. B510]
          Length = 579

 Score =  260 bits (665), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 162/452 (35%), Positives = 254/452 (56%), Gaps = 6/452 (1%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           SLGR R+L+LA   L  ++        ++ PH   LY  LE ++  RI+ A+ E  +   
Sbjct: 14  SLGRGRLLVLAGTGLGIVLAVAGMALLLSQPHMTALYSGLEPAEAGRIAKAVQEMGVPVN 73

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135
              +G++ISVP + V + R+ LA +GLPS     GYELFD     G+TSFMQ I R+RA+
Sbjct: 74  AGFDGTTISVPQADVSRVRMALAEKGLPSRG-GVGYELFDTDKPLGITSFMQRINRLRAM 132

Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRH 193
           EGE+ RTI+++SG+ AARVHIV+P+   F +   +PTASV++R    +    K A +IRH
Sbjct: 133 EGELGRTIETLSGVEAARVHIVLPEREEFSRSAPKPTASVVVRMRGRAAMDRKQALSIRH 192

Query: 194 LVAAAVPNLDMGDVTVLDSTGK-LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAF 252
           LV+AAVPNL    VTV+DS+G+ LLT ++       ++  +  A +  +   + + L A 
Sbjct: 193 LVSAAVPNLKPSAVTVMDSSGELLLTEDDGPGLASARTDGLRVAAETRVARAVEQMLTAR 252

Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNM 312
           LG  N R  V AE+    + +R   +DP+S+V RS +  ++ +RS+ S  E  VT EQN+
Sbjct: 253 LGAGNVRVQVAAEVETKREVVRSQSFDPNSQVVRSTQTVQEQERSQDSNGEPPVTAEQNL 312

Query: 313 PHVSDR-KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV 371
           P    R +   P+S  +T ++EE  NYEI+  S  T  +   + RLS+AV+VN    T  
Sbjct: 313 PQRDVRAQSQGPQSSNDTKRQEETVNYEISNVSRETVIEPGDVRRLSVAVLVNGTWKTAP 372

Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE-NQLFNSGTVQVSFMD 430
            G    + +    L  + ++V +A G +  RGD +T+ +++F++         +     +
Sbjct: 373 DGTRQYEPRSTEELRRLGELVRSAMGFSEARGDRVTVDNLEFVDLAPDLTPRPLGDEIAE 432

Query: 431 ILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
            L+R+  T+I  ++ LV + LV  +GL  L R
Sbjct: 433 TLTRNIMTLIQWVILLVLSALVILVGLRPLIR 464


>gi|261216584|ref|ZP_05930865.1| flagellar M-ring protein FliF [Brucella ceti M13/05/1]
 gi|261319454|ref|ZP_05958651.1| flagellar M-ring protein FliF [Brucella ceti M644/93/1]
 gi|260921673|gb|EEX88241.1| flagellar M-ring protein FliF [Brucella ceti M13/05/1]
 gi|261292144|gb|EEX95640.1| flagellar M-ring protein FliF [Brucella ceti M644/93/1]
          Length = 332

 Score =  253 bits (645), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 147/322 (45%), Positives = 211/322 (65%), Gaps = 2/322 (0%)

Query: 17  LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76
           LG  +++ L  V    +   +    ++  P Y+ LYV L   DVNR+ +AL EA I F +
Sbjct: 12  LGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVNRMGLALGEAGIPFDV 71

Query: 77  SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136
             +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S GLTSFMQEITRVRALE
Sbjct: 72  KSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGLTSFMQEITRVRALE 130

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVA 196
           GEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA      +SA++IR LV 
Sbjct: 131 GEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGGFSAESAQSIRQLVT 190

Query: 197 AAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255
           AAVP+LD   VTVLD+ G LL +A E        + S+ Q +   ++ +I KALA +LG+
Sbjct: 191 AAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASHVDDSIRKALAPYLGL 250

Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV 315
            +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  ++ ++A  VEQN+P  
Sbjct: 251 GHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNNRNDNATGVEQNIPQE 310

Query: 316 SDRKVPLPRSLENTDKKEEQSN 337
             +      S E TD++EE +N
Sbjct: 311 QIQNRNGESSTEKTDRREELTN 332


>gi|218508689|ref|ZP_03506567.1| flagellar MS-ring protein [Rhizobium etli Brasil 5]
          Length = 332

 Score =  252 bits (644), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 151/357 (42%), Positives = 213/357 (59%), Gaps = 43/357 (12%)

Query: 206 DVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVA 264
           DVT+LDS G+LL + +E   + L +SL+IVQ +Q E+E NI+KALA FLG+DNFRS+V A
Sbjct: 2   DVTILDSAGQLLASGDEASNSSLNRSLNIVQNVQQEVESNIDKALAPFLGMDNFRSSVTA 61

Query: 265 ELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRK--VPL 322
           +LN D QQI+E  YDP+SKVERS+R +K+AQ+S+  Q ++A TVEQN+P  +        
Sbjct: 62  DLNTDAQQIQETTYDPESKVERSVRSTKEAQQSQQKQSDNATTVEQNIPQAAPDAGGASG 121

Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382
           P S + +DK+EEQ +Y+IN+++ ATT ++YK+E+LSIAVVVN                  
Sbjct: 122 PESQDKSDKREEQIHYDINSRTTATTRNSYKVEKLSIAVVVN------------------ 163

Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINA 442
                     ++A GI+++RGD +T+T+MDFLENQL    T  V  MD+LSR+ A +IN+
Sbjct: 164 ----------TSAAGIDAKRGDVVTVTAMDFLENQLLEDATGGVRVMDMLSRNLAGIINS 213

Query: 443 LVFLVGTLLVTFLGLHALRRLHNIDDAKK------GEVGGKSILSPPPISSAVTTGLMPN 496
           L F+    +V ++GL  L R  + + A         E  G  +    P   A    LM  
Sbjct: 214 LAFVAVAFVVVWMGLRPLVRSVSGNGASAVLGDATPEAAGLELPDFAPAVGAPGGALM-- 271

Query: 497 DNIALD---SSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
           D    D    S +D+ S   +     N  V +  + +L  M+EINEER AKILRKWA
Sbjct: 272 DGFGSDFGFDSTEDLLSLGDD-DGNFNRRVKEGPERKLARMVEINEERAAKILRKWA 327


>gi|218460680|ref|ZP_03500771.1| flagellar MS-ring protein [Rhizobium etli Kim 5]
          Length = 310

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 139/318 (43%), Positives = 202/318 (63%), Gaps = 28/318 (8%)

Query: 254 GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP 313
           G+DNFRS+V A+LN D QQI+E  YDP+SKVERS+R +K+AQ+S+  Q ++A TVEQN+P
Sbjct: 1   GMDNFRSSVTADLNTDAQQIQETTYDPESKVERSVRSTKEAQQSQQKQSDNATTVEQNIP 60

Query: 314 HVSDRKVPLP--RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV 371
             +          S + +DK+EEQ+NYEIN+K+ ATT ++Y++E+LSIAVVVNKGR+ ++
Sbjct: 61  QAAPDAGGAGGPESQDKSDKREEQTNYEINSKTTATTRNSYQVEKLSIAVVVNKGRIAKM 120

Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDI 431
           +G  ADQ K+D+Y+AE+ KIV++A GI+++RGD +T+T+MDFLENQL    T  V  MD+
Sbjct: 121 VGEPADQAKVDAYIAEMQKIVASAAGIDAKRGDVVTVTAMDFLENQLLEDATGGVRVMDM 180

Query: 432 LSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTT 491
           LSR+ A +IN+L F+    +V ++GL  L R      +  G   G ++    P S+ +  
Sbjct: 181 LSRNLAGIINSLAFVAVAFVVVWMGLRPLVR------SVSGNGAGAALGDSSPESAGLE- 233

Query: 492 GLMPN-------------DNIALD---SSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
             +P+             D    D    S +D+ S   +     N  V +  + +L  M+
Sbjct: 234 --LPDFAPAAGASGGALMDGFGSDFGFDSTEDLLSLGDD-DGNFNRRVKEGPERKLARMV 290

Query: 536 EINEERFAKILRKWARSE 553
           EINEER AKILRKWA  E
Sbjct: 291 EINEERAAKILRKWAIDE 308


>gi|254706488|ref|ZP_05168316.1| flagellar MS-ring protein [Brucella pinnipedialis M163/99/10]
          Length = 330

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 146/314 (46%), Positives = 208/314 (66%), Gaps = 5/314 (1%)

Query: 4   LDQLLQFFKSGT--SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
             QL++  K GT   LG  +++ L  V    +   +    ++  P Y+ LYV L   DVN
Sbjct: 5   FQQLIEQLK-GTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           R+ +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S G
Sbjct: 64  RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 122

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA  
Sbjct: 123 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 182

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHE 240
               +SA++IR LVAAAVP+LD   VTVLD+ G LL +A E        + S+ Q +   
Sbjct: 183 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 242

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           ++ +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  +
Sbjct: 243 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 302

Query: 301 QPESAVTVEQNMPH 314
           + ++A  VEQN+P 
Sbjct: 303 RNDNATGVEQNIPQ 316


>gi|261313942|ref|ZP_05953139.1| flagellar MS-ring protein [Brucella pinnipedialis M163/99/10]
 gi|261302968|gb|EEY06465.1| flagellar MS-ring protein [Brucella pinnipedialis M163/99/10]
          Length = 335

 Score =  246 bits (629), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 146/314 (46%), Positives = 208/314 (66%), Gaps = 5/314 (1%)

Query: 4   LDQLLQFFKSGT--SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
             QL++  K GT   LG  +++ L  V    +   +    ++  P Y+ LYV L   DVN
Sbjct: 10  FQQLIEQLK-GTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 68

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           R+ +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S G
Sbjct: 69  RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 127

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA  
Sbjct: 128 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 187

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHE 240
               +SA++IR LVAAAVP+LD   VTVLD+ G LL +A E        + S+ Q +   
Sbjct: 188 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 247

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           ++ +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  +
Sbjct: 248 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 307

Query: 301 QPESAVTVEQNMPH 314
           + ++A  VEQN+P 
Sbjct: 308 RNDNATGVEQNIPQ 321


>gi|288960029|ref|YP_003450369.1| flagellar M-ring protein [Azospirillum sp. B510]
 gi|288912337|dbj|BAI73825.1| flagellar M-ring protein [Azospirillum sp. B510]
          Length = 553

 Score =  230 bits (587), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 169/563 (30%), Positives = 286/563 (50%), Gaps = 24/563 (4%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++ LLQ  ++   LG  R+  +  V L+ I  F+     +++P  + LY +L+ ++   I
Sbjct: 1   MNNLLQTLRN---LGPARLAAIGGVGLLLIGFFVYLTTRLSTPEMELLYAELQPTEAAAI 57

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  L EA + F +  +G+ I VP+  VG  R+ +AAQGLPS  S  GYELFDK   FG T
Sbjct: 58  AKKLEEAKVPFSVDKSGTKIMVPADQVGPMRMRMAAQGLPSGGS-VGYELFDKGEGFGAT 116

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
           SFMQ I  +RALEGE+ART+Q+++G+  ARVH+V+P    F +     TASV ++ + P 
Sbjct: 117 SFMQNINHLRALEGEMARTVQTLNGVQQARVHLVLPKRELFARQQNPATASVFLK-LRPG 175

Query: 184 VYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQAI 237
              S E   AI+ L+AA+VPNLD   ++++D  GKLL   T ++    ++  +    QA 
Sbjct: 176 AQLSRENIQAIQQLIAASVPNLDPNRISIVDDKGKLLARGTGSDTAEAMMASAEEKKQAY 235

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           +  +   I   L   LG    R+ V A+L+ D    +  ++DPDS+V RS +   ++  S
Sbjct: 236 EGRLARTIEDLLGRTLGYGKVRAEVSADLDFDRITTQSEIFDPDSQVVRSTQTVNESNES 295

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
               P + VTV+QN+P         P S   +++ EE  NYEI   + +   ++ ++ RL
Sbjct: 296 SDRDPLAPVTVDQNLPTAQSSSSASPLSSNKSNRAEETINYEITKTTKSHVRESGQVRRL 355

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL--E 415
           S+AV+V+           A Q + D  +  I  +V +A G+++ RGD++ + +M F   E
Sbjct: 356 SVAVLVDGTYQLSKDAPPAYQPRSDQEIESIKALVRSAVGLDAVRGDSLEVINMRFWSPE 415

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL--RRLHNIDDAKKGE 473
           + +     +   FM +       +   +V  +  +L+  L +  L  R     +  ++ E
Sbjct: 416 DDIQKPDEL---FMGMTKDDLFRIAEMVVLGIVAVLIILLVIRPLIARAFEKAEMQEEDE 472

Query: 474 VGGKSILSPP---PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
           +    +L+     P + A  TG +  D +AL+++  D         +R+   V   S  +
Sbjct: 473 M--DRLLTDQAGMPAALAAPTGALAQD-LALEAAQADEELEQMIDINRVEGRVRASSLRK 529

Query: 531 LLHMIEINEERFAKILRKWARSE 553
           +  +++ + E    ILR W   E
Sbjct: 530 VGEIVDKHPEEAVSILRNWLYQE 552


>gi|209963531|ref|YP_002296446.1| flagellar M-ring protein FliF [Rhodospirillum centenum SW]
 gi|209956997|gb|ACI97633.1| flagellar M-ring protein FliF [Rhodospirillum centenum SW]
          Length = 573

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 149/422 (35%), Positives = 242/422 (57%), Gaps = 19/422 (4%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           A++  LLQ  ++   LG+ R+++LA+     ++      F ++      LY  L+ ++  
Sbjct: 22  AVVANLLQNLRA---LGQRRLMLLAAAGAGVLLAVALVAFGLSRAPMGLLYAGLDDAEAG 78

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           RI   L    + +++S  G +I +P   + + R+ LA QGLPS+   +GYELFD+  + G
Sbjct: 79  RILTQLQSMKVPYQVSGTGGAILLPQDQIARTRMLLAQQGLPSAG-GAGYELFDEQGALG 137

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           LTSFMQ + + RALEGE+ARTIQ+++G+ +ARVH+ MPD  +F    A   ASV++R + 
Sbjct: 138 LTSFMQRLNKARALEGELARTIQTLNGVKSARVHLSMPDGEAFAPGAAPAGASVVVRTVT 197

Query: 182 PSVYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240
             + +S A AIRHLVAAAVP L  G VTV+D++G +L A+    +  G +L   + ++  
Sbjct: 198 GGLDRSQALAIRHLVAAAVPRLQPGAVTVMDASGVVLAADGGATD--GLALLHAEELRSA 255

Query: 241 IEMNINKALAAFL----GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
            E  + +A+   L    G  N R  V AE+++  + +RE  +DP+S+V RS +  ++ + 
Sbjct: 256 TETRLARAIEEMLVPRFGPGNIRVRVAAEIDLGRETLREQTFDPNSRVLRSTQTVEERES 315

Query: 297 S---ETSQPESAVTVEQNMP-HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
           S   +T QP    TVEQN+P   +D + P     E+  ++EE +NYEI++       D  
Sbjct: 316 SLDRDTDQP---TTVEQNLPLEAADAQAPQGSRSESA-REEETANYEISSILRERAQDAG 371

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
           ++ RL++AVVVN   +    G+S  Q + D  L+ I  +V  A G + RRGD + + ++ 
Sbjct: 372 EIRRLAVAVVVNGSYVPGADGKSVYQPRSDEELSRIEHLVRTAIGFDDRRGDMVAVENLQ 431

Query: 413 FL 414
           FL
Sbjct: 432 FL 433


>gi|56384261|gb|AAV85779.1| FliF [Azospirillum brasilense]
          Length = 521

 Score =  216 bits (550), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 162/526 (30%), Positives = 267/526 (50%), Gaps = 24/526 (4%)

Query: 43  VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL 102
           +++P  + LY +L+ ++   I+  L EA + F +   G+ I V +  VG  R+ +AA GL
Sbjct: 4   LSTPEMELLYAELQPTEAAAIAKKLEEAKVPFTVDKTGTKIMVAAEQVGPTRMRMAAAGL 63

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162
           PS  S  GYELFDK   FG TSFMQ I  +RALEGE+ART+Q+++G+ +ARVH+V+P   
Sbjct: 64  PSGGS-IGYELFDKGEGFGATSFMQNINHLRALEGEMARTVQTLNGVQSARVHLVLPKRE 122

Query: 163 SFRKIGARPTASVMIRAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLL-- 217
            F +     TAS+ I+ + P    S E   AI+HL+AA+VPNLD   ++++D  G LL  
Sbjct: 123 LFARQQNPATASIFIK-LRPGAQLSRENIQAIQHLIAASVPNLDPSRISIVDDKGTLLAR 181

Query: 218 -TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
            T N+    +L  +     A +  +   I   L   +G    R+ V A+L+ D    +  
Sbjct: 182 GTGNDSADAMLASAEEKKVAYESRVARIIEDLLGRTVGYGKVRAEVSADLDFDRITTQSE 241

Query: 277 VYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQS 336
           ++DP+S+V RS +   +A  S    P S VTV+QN+P         P S    ++ EE  
Sbjct: 242 IFDPESQVVRSTQTVTEANESHDRDPLSPVTVDQNLPTAQSGNNAGPISQNKQNRSEETI 301

Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR----SADQGKIDSYLAEINKIV 392
           NYEI+  +     ++ ++ RLS+AV+V+    T  L R    +A Q + +  L  I  +V
Sbjct: 302 NYEISRTTKNHVRESGQVRRLSVAVLVDG---TYSLPRDGNPAAYQPRPEQELESIKALV 358

Query: 393 SAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452
            +A G+++ RGDT+ + +M F   +  +    +  F+ +       +   +V  +  +L+
Sbjct: 359 RSAVGLDAVRGDTLEVINMRFWSPE-DDVQKPEELFLGMTKDDLFRIAEMVVLGIVAVLI 417

Query: 453 TFLGLHAL--RRLHNIDDAKKGEVGGKSIL---SPPPISSAVTTGLMPNDNIALDSSNQD 507
             L +  L  R     D  ++ ++    +L   S  P + A  TG +  D +AL+++  D
Sbjct: 418 ILLVIRPLITRAFEKADQQEEDDM--DRLLADQSGMPAALAAPTGALAQD-LALEAAQAD 474

Query: 508 IFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                    +R+   V   S  ++  ++E + E    ILR W   E
Sbjct: 475 EELEQMIDINRVEGRVRASSLRKVGEIVEKHPEEAVSILRNWLYQE 520


>gi|114765263|ref|ZP_01444395.1| flagellar M-ring protein [Pelagibaca bermudensis HTCC2601]
 gi|114542398|gb|EAU45426.1| flagellar M-ring protein [Roseovarius sp. HTCC2601]
          Length = 535

 Score =  209 bits (533), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 151/472 (31%), Positives = 239/472 (50%), Gaps = 26/472 (5%)

Query: 34  MLFMAARFF----VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSM 89
           M+F  A FF    V +P Y  LY  L  ++  R+  +L +A I  R    G+++SVP   
Sbjct: 1   MVF--AMFFGLSAVTTPDYVALYRDLSPAEAGRMVESLEQAGIRSRTDMAGTAVSVPGED 58

Query: 90  VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149
           + +AR+ LA  GLP+  +  G+E+FD+ +  G+ +FMQ + R RA+EGE+AR+IQ+I G+
Sbjct: 59  MARARMLLAGAGLPNDGT-PGWEIFDEASGLGMNTFMQRVNRARAMEGELARSIQTIDGV 117

Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209
            AARVH+V+P+   F +   RP+ASV++R       + A AIR LVA+AVP+L    VTV
Sbjct: 118 EAARVHLVLPEREPFSRERPRPSASVIVRGSRQVGMRQARAIRSLVASAVPDLAPAQVTV 177

Query: 210 LDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
           L +TG+ + + + E        S    I+  +   I + L+A +G  N R  V  +L  +
Sbjct: 178 LSATGETILSEDGEAGSEASLQSARAQIEDRLGQRIAQILSARVGAGNARVQVSVDLTTE 237

Query: 270 TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT 329
            Q +RE  YDPD +V RS   +++  R + +     V V  ++P      VP   +    
Sbjct: 238 RQVVREQTYDPDQRVVRSTE-TREETREDQTAAGGEVGVADDIPAALAADVPG-NNRNTA 295

Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID------S 383
           +   E  NYEI   S  T  +   +E++S+AV+VN       +    D G +D       
Sbjct: 296 NSTNEIVNYEIGGTSSETVREPGDIEKVSVAVLVNG------IYNVQDGGAVDYEERSQE 349

Query: 384 YLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINAL 443
            L  +  +V +A G +  RGD++ + S+ F++  +     V  SF   L+ +  T++  +
Sbjct: 350 ELQRLEALVQSAIGFDEARGDSVEVVSLRFMDYSMDVGEPVSRSFAQTLTENTGTILRGV 409

Query: 444 VFLVGTLLVTFLGLH-ALRRLHNIDDAKKGEVGGKSILSPPPISS--AVTTG 492
             L     V  LG+  AL R+   D     E G   +   PP  +  A TTG
Sbjct: 410 FALALVAAVLALGVRPALNRV--FDQPAIAEGGSADLPGLPPSGNLPATTTG 459


>gi|209964124|ref|YP_002297039.1| flagellar MS-ring protein [Rhodospirillum centenum SW]
 gi|209957590|gb|ACI98226.1| flagellar M-ring protein FliF [Rhodospirillum centenum SW]
          Length = 556

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 160/554 (28%), Positives = 264/554 (47%), Gaps = 17/554 (3%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
           F ++  +LG  R+  +    LV + LF+      +SP    LY  L  +D   I   L +
Sbjct: 9   FLQTLRNLGAVRLAAIGGATLVIVGLFVYMMSQWSSPGMSLLYSDLTPADGGAIVQQLEQ 68

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
             I ++ S +G+ I VPS  VG+ R+ +A QGLPS   N GYELF++    G TSFMQ I
Sbjct: 69  QQIPYKASPDGTRIEVPSDQVGRVRMLMAQQGLPSGG-NVGYELFNQPEGLGTTSFMQNI 127

Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE 189
            ++RALEGE++RT+Q++  + AAR+H+V+P    F +     TASV +R + P      E
Sbjct: 128 QQLRALEGELSRTVQTLQPVQAARIHLVLPKRELFSRQNQTATASVFVR-LRPGASLGKE 186

Query: 190 ---AIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAIQHEIEM 243
              AI+ LVAAAVP L+   V ++D  G +L     ++ +  +L  +     A +  +  
Sbjct: 187 QVLAIQTLVAAAVPQLEPDMVAIVDDKGNVLARGMGSDSQEAMLATAEEKKLAYEQRLTQ 246

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            +   L+  +G    R+ V AEL+ D       +YDPDS+V RS +   +    +     
Sbjct: 247 TVEDLLSRTVGFGRVRAQVSAELDFDRITTNSEIYDPDSQVVRSTQTVNEQSEDQNRDGI 306

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
             VTV  N+P           S   T + EE  NYEIN        +  ++ RLS+AV+V
Sbjct: 307 DPVTVANNLPTADATNTASGLSSSKTSRAEESINYEINRTVKVHERETGQIRRLSVAVLV 366

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF-LENQLFNSG 422
           +        G S  Q + ++ L ++ ++V +A G ++ RGDT+ + +M F   + L   G
Sbjct: 367 DGTYAAAEDGTSTYQPRPEAELDQLRRLVESAIGFDAARGDTVEVVNMRFATPDDLAGLG 426

Query: 423 TVQVSFM---DILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
              +  +   D+       V+  +  LV  L++  L   AL R   ++D      GG  +
Sbjct: 427 EETIFGLPKEDVFRIAQTIVLAIVAILVILLVIKPLVARALDRTPQLEDEPDLLAGGDGV 486

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
               P  +    G +  + +AL+++  +         +R++  V   S  ++  ++E + 
Sbjct: 487 ----PQLAGPGGGALARE-LALEAAQANEELEQMIDINRVDGRVRASSLRKVGEIVEKHP 541

Query: 540 ERFAKILRKWARSE 553
           E    I+R W   E
Sbjct: 542 EEAVSIIRNWLYQE 555


>gi|17988495|ref|NP_541128.1| flagellar M-ring protein FLIF [Brucella melitensis bv. 1 str. 16M]
 gi|265998972|ref|ZP_05464502.2| flagellar M-ring protein FliF [Brucella melitensis bv. 2 str. 63/9]
 gi|17984286|gb|AAL53392.1| flagellar m-ring protein flif [Brucella melitensis bv. 1 str. 16M]
 gi|263091454|gb|EEZ15990.1| flagellar M-ring protein FliF [Brucella melitensis bv. 2 str. 63/9]
 gi|326554600|gb|ADZ89239.1| flagellar MS-ring protein [Brucella melitensis M5-90]
          Length = 242

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 112/218 (51%), Positives = 147/218 (67%), Gaps = 4/218 (1%)

Query: 4   LDQLLQFFKSGT--SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
             QL++  K GT   LG  +++ L  V    +   +    ++  P Y+ LYV L   DVN
Sbjct: 10  FQQLIEQLK-GTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 68

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           R+ +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S G
Sbjct: 69  RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 127

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA  
Sbjct: 128 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 187

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
               +SA++IR LVAAAVP+LD   VTVLD+ G LL +
Sbjct: 188 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLAS 225


>gi|326411311|gb|ADZ68375.1| flagellar MS-ring protein [Brucella melitensis M28]
          Length = 239

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 112/218 (51%), Positives = 147/218 (67%), Gaps = 4/218 (1%)

Query: 4   LDQLLQFFKSGT--SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
             QL++  K GT   LG  +++ L  V    +   +    ++  P Y+ LYV L   DVN
Sbjct: 7   FQQLIEQLK-GTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 65

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           R+ +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S G
Sbjct: 66  RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 124

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA  
Sbjct: 125 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 184

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
               +SA++IR LVAAAVP+LD   VTVLD+ G LL +
Sbjct: 185 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLAS 222


>gi|256042874|ref|ZP_05445820.1| flagellar M-ring protein FLIF [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256112169|ref|ZP_05453090.1| flagellar M-ring protein FLIF [Brucella melitensis bv. 3 str.
           Ether]
          Length = 237

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 112/218 (51%), Positives = 147/218 (67%), Gaps = 4/218 (1%)

Query: 4   LDQLLQFFKSGT--SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
             QL++  K GT   LG  +++ L  V    +   +    ++  P Y+ LYV L   DVN
Sbjct: 5   FQQLIEQLK-GTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           R+ +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S G
Sbjct: 64  RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 122

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA  
Sbjct: 123 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 182

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
               +SA++IR LVAAAVP+LD   VTVLD+ G LL +
Sbjct: 183 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLAS 220


>gi|83591884|ref|YP_425636.1| flagellar MS-ring protein [Rhodospirillum rubrum ATCC 11170]
 gi|83574798|gb|ABC21349.1| Flagellar FliF M-ring protein [Rhodospirillum rubrum ATCC 11170]
          Length = 551

 Score =  197 bits (500), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 160/570 (28%), Positives = 274/570 (48%), Gaps = 49/570 (8%)

Query: 10  FFKSGTSLGRTRILILASVI--LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           F ++  +LG  R+  LA V   L+  ++++A+R    S   + LY  L  +D  +I   L
Sbjct: 4   FVQTMRNLGPVRLAALAGVAIALIGFVIYVASRLSGTS--MELLYGDLAPADAKQIIAQL 61

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
            E NI ++++++G S+ VPS  V K R+ +A   LPS ++  GYE+FD  ++ G T F Q
Sbjct: 62  EERNIPYQMANDGRSVLVPSDQVLKLRVQMAESALPSGAT-VGYEIFDSASALGSTQFTQ 120

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI----RAINPS 183
            I  VRALEGE+ART+++I G+  ARVH+V+P    F +    P+ASV++    R + P 
Sbjct: 121 NINMVRALEGELARTVRTIQGVEGARVHLVLPKREPFTRDQVAPSASVVLLMKGRRLQP- 179

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHEI 241
             +   A+++LVAAAVP +  G V+++D  G LLT    E   L       + +A +  +
Sbjct: 180 --EQVVAVQNLVAAAVPGMKPGQVSIIDERGTLLTRGMGEEGALIAQNQDELRKAEERRL 237

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
             +I + L   +GV   R+ VVA+++ +        +DP+ +V RS     +  +S  S 
Sbjct: 238 AQSIEQLLERTIGVGKVRAEVVADMDFNRIVTSRESFDPNGQVVRSTTTVDEQNKS--SD 295

Query: 302 PESAVTVEQNMPH---VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
             S V+V+QN+P      +   P  ++ EN  + EE  NYEI         +   ++RLS
Sbjct: 296 AVSNVSVQQNLPEAQFAGNGGAPTSQTSEN--RTEETVNYEITKIVTNEVKEAGVVKRLS 353

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           +AV+V+    T   G +  Q + D  + +I  +V +A G +  RGD I + +M F++   
Sbjct: 354 VAVMVDGTSTTNDAGVTTWQPRSDDEMQKITSLVRSAMGYDQARGDQIEVVNMQFIDPGA 413

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL--RRLHNIDDAKKGEVGG 476
                    F+         +   L   V  +L+  L +  L  R   N+      + GG
Sbjct: 414 LFDDAAAWEFLGFTKAEVMKMAEGLGVAVVAILIILLVVRPLVQRAFENLPSG--ADQGG 471

Query: 477 KSILSPP---------PISSAVTTGL--MPNDNIALDSSNQ--DIFSHSRNLQSRINSYV 523
             +L+           P   ++  G+  MP++   +D + +  DI         ++   V
Sbjct: 472 AGLLTAEMQSHPQLTGPGGGSIPAGMLGMPDE---MDDAEELIDI--------DKVEGRV 520

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSE 553
              S  ++  +++ + E    I+R W   E
Sbjct: 521 KASSLRKIGEIVDKHPEEALSIIRNWLYQE 550


>gi|83955113|ref|ZP_00963769.1| flagellar FliF M-ring protein [Sulfitobacter sp. NAS-14.1]
 gi|83840442|gb|EAP79615.1| flagellar FliF M-ring protein [Sulfitobacter sp. NAS-14.1]
          Length = 564

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 136/451 (30%), Positives = 231/451 (51%), Gaps = 11/451 (2%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           SLG+ ++++L    +  ++L +     V  P Y  LY  L ++  N I   L+ A  +  
Sbjct: 10  SLGKNKLMMLGGAGIGVVLLMILGIGAVTRPDYAPLYSNLSITSANSIEATLANAGFNAM 69

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135
           +S++G+SISVP     +AR+ LA  G+P    + G+ELFD+ +   + SF+Q+I ++RA+
Sbjct: 70  VSEDGTSISVPRGDAVRARMVLAETGMPIDG-DPGWELFDESSGLAMNSFLQKINKMRAM 128

Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRH 193
           EGE+AR+IQ++ GI +ARVH+V+PD   F +    P AS+++R  +      K A A+ +
Sbjct: 129 EGELARSIQTLDGISSARVHLVLPDREPFSRDAPAPRASIILRPESGRAVTRKQAVAVSN 188

Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFL 253
           LVA+AV +LD+  VTVL ++G+ + A   + +  G   S    I+  +   I   L A +
Sbjct: 189 LVASAVADLDISRVTVLSASGETILAEGPDGSSQGGVQSAKAGIEDRLSQEIQNILTARV 248

Query: 254 GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA-VTVEQNM 312
           G  N R  V  EL    + I E  YDPD +V RS     + Q   T   E+  V VE N+
Sbjct: 249 GAGNARVHVNVELTTQREVIVEQTYDPDQQVVRSTETKSEDQ---TGTKEAGNVGVENNI 305

Query: 313 PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372
           P           S   ++  +E   YEI         +   + R+S+AV+VN   +  V 
Sbjct: 306 PAALADGNGAGTSTRRSE-ADEIVQYEIGNTRREIVREAGDVRRMSVAVLVNG--IYNVD 362

Query: 373 GRSADQG-KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDI 431
           G       +    LA + ++V  A G ++ RGD++++ SM F++  +     +  S  D 
Sbjct: 363 GSDVIYAERTPEELARLGELVKTAVGFDTTRGDSVSVDSMRFMDYSMDLGDPIDKSIGDE 422

Query: 432 LSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           L+ +  +++  ++ L+   L+   G+  + R
Sbjct: 423 LTDNVVSIVRGVLALLVVGLILVFGVRPMLR 453


>gi|254470345|ref|ZP_05083749.1| flagellar M-ring protein FliF [Pseudovibrio sp. JE062]
 gi|211960656|gb|EEA95852.1| flagellar M-ring protein FliF [Pseudovibrio sp. JE062]
          Length = 528

 Score =  193 bits (491), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 154/535 (28%), Positives = 266/535 (49%), Gaps = 25/535 (4%)

Query: 27  SVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVP 86
           + +L+ +  F+  R    +P    L+  L + D   I   +    + + +  NG S+ VP
Sbjct: 2   AALLIGLFSFIIVR--ATAPQMVPLFTDLTLEDAAAIVSQVESQGVSYELGVNGRSVLVP 59

Query: 87  SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146
              V + R+ LA  GLPS     GYE+FDK ++ G TSF+Q + R RALEGE++RTI+SI
Sbjct: 60  QENVHRLRMTLAEAGLPSGG-GVGYEIFDKTDTLGATSFVQNLNRTRALEGELSRTIRSI 118

Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGD 206
             I +ARVH+V+P+   F++    PTAS+ I+           AI+HLVA AV  L+   
Sbjct: 119 GRIASARVHLVIPEKQLFQRDREPPTASIAIKVQGSLTNGQIRAIQHLVATAVEGLEPSY 178

Query: 207 VTVLDSTGKLLTANEMERNILGKSLSIVQ---AIQHEIEMNINKALAAFLGVDNFRSAVV 263
           V+++D  G LL +   ++  L    S+ +    ++  +   + + L   +G    R  V 
Sbjct: 179 VSIVDERGTLLASGTGDKEGLAGGSSLDERRLTMESRLRQQVEEILNNVVGTGRARVRVA 238

Query: 264 AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLP 323
           AE+N + +   + ++DPD +V RS + SK+   S T+  E  V+V   +P+ +D      
Sbjct: 239 AEINYNRKTETQELFDPDGQVLRSSQ-SKEENASSTNG-EDTVSVGNQLPN-ADAAGSSA 295

Query: 324 RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS 383
            S ++++  EE  NYEI+  ++   ++   LERLS+AV+V+    T   G    Q +   
Sbjct: 296 GSKDSSNVSEEILNYEISKSTVTEIYEAGGLERLSVAVLVDGTYTTSEDGTQTYQPRSRE 355

Query: 384 YLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN-----SGTVQVSFMDILSRHFAT 438
            L +I  +V  A G +  RGDT+ + +M F+E  L +      G    +  DI+   FA 
Sbjct: 356 ELEQIATLVRTAVGFSKHRGDTVEVVNMRFVEAPLSDFADGEGGLFDFTRADIM--KFAE 413

Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG--EVGGKSILSPPPISSAVTTGLMPN 496
           +   ++F++  LL+ F     ++R+   DD  +   E GG  +L   P  + VT      
Sbjct: 414 L--GVLFVITVLLLIFAVSPLMKRILAKDDEPEAAIEGGGVQML---PDGTLVTESPAQV 468

Query: 497 DNIA--LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549
           + I   +++   +I +      +++ + + + S  ++  MIE +      I+R W
Sbjct: 469 EGIVGEMEAVPTEIPTAEWIEDAKMQAALHQSSIKQISEMIEDSPSEAVNIVRGW 523


>gi|83309602|ref|YP_419866.1| flagellar MS-ring protein [Magnetospirillum magneticum AMB-1]
 gi|82944443|dbj|BAE49307.1| Flagellar biosynthesis/type III secretory pathway lipoprotein
           [Magnetospirillum magneticum AMB-1]
          Length = 574

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 139/458 (30%), Positives = 230/458 (50%), Gaps = 40/458 (8%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           D +  F +    LG  R+  +A V +  +  F+     V +P  + LY  L++ D  +I 
Sbjct: 20  DDVNAFLQMLRGLGPMRLAAIAGVGVSILGFFIYLMSRVAAPQMELLYGDLDLGDSKQII 79

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L+   I + +  +G+ + VP       R+ +A Q LP+    +GYELFDK ++ G TS
Sbjct: 80  EKLTADKIPYELRKDGTEVWVPKDRKLDLRVRMAEQALPAGGRMAGYELFDKQDALGSTS 139

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           F Q IT VRALEGE+++TI+SI  + AARVH+V+P   +F +    P+ASV+I+      
Sbjct: 140 FQQNITMVRALEGELSKTIRSIDRVKAARVHLVLPKREAFSRDTQEPSASVIIKMNGAQR 199

Query: 185 YKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLL-------------TANEMERNILGK 229
               +  AI+HL+AAAVP +    ++++D  G LL             TA EM+     K
Sbjct: 200 LDKGQVSAIQHLIAAAVPKMKPSRISIVDDKGTLLAKGFENSKEYQAQTAEEMKVKTEAK 259

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
              +V+ I+  +E +        LG    R+ V  +++M      E  +DP++KV RS  
Sbjct: 260 ---LVKTIEDLLERS--------LGPGRVRAEVTVDMDMSQATTTEETFDPETKVVRSQV 308

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
              + ++S+ ++P + VTV+QN+P  +       R+    +K +E  NYEI+ K+ +T  
Sbjct: 309 TVNEGEQSQDAEP-TPVTVQQNLPDPNASSSGNIRTSTKINKNQETVNYEISRKTKSTVR 367

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY-------LAEINKIVSAATGINSRR 402
           +  ++ ++S AV+V+      V  +SAD GK  SY       L++I  +V +A G    R
Sbjct: 368 EMGEIRKVSAAVIVDG-----VREQSAD-GKQTSYRERTAEELSQIEALVKSAIGYTKDR 421

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440
            D + + SM F + +          F+  + R F   I
Sbjct: 422 DDQVKVASMPFYKGEELLQAEEPGEFIFGMRRDFVEKI 459


>gi|89068713|ref|ZP_01156099.1| putative flagellar M-ring protein [Oceanicola granulosus HTCC2516]
 gi|89045676|gb|EAR51738.1| putative flagellar M-ring protein [Oceanicola granulosus HTCC2516]
          Length = 562

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 130/405 (32%), Positives = 218/405 (53%), Gaps = 9/405 (2%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           SLG+ R++ LA+  +      +     V +P Y  LY  L  S   ++   L +A     
Sbjct: 10  SLGQRRLIALAATGIGLTAALLLGVGAVLAPTYAPLYSGLSPSGAAQVVGTLEQAGFRVD 69

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135
           +S +G+ +SVP S + +AR+ LA QGLP      G+ELFD     G+ SFMQ I R+RAL
Sbjct: 70  VSADGTMVSVPDSDLARARMALADQGLPDEGV-PGWELFDNSTGLGMNSFMQRINRLRAL 128

Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRH 193
           EGE+AR+IQ+I  + +ARVH+V+P+  +F +    P+ASV++RA   S      A AIR+
Sbjct: 129 EGELARSIQTIDAVDSARVHLVLPEREAFSRARPEPSASVIVRASGRSEIGRNQARAIRN 188

Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFL 253
           LVAAAVP+L    VTVL ++G+ + A++ E        S+  +++  +  +I++ L+A +
Sbjct: 189 LVAAAVPDLAPSRVTVLSASGETILADDGEPGSDVSLQSVRASLEDRMSRSIDQILSARV 248

Query: 254 GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP 313
           G  N R  V  +L  + Q I +  YDP+ +V RS   +++    +T   +  V    N+P
Sbjct: 249 GAGNARVQVSVDLTTERQVILQQSYDPNQRVVRSTE-TRNETVEDTQAGQDQVDAAGNLP 307

Query: 314 H-VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK--GRLTE 370
             +         +  N    +E  NYEI +       +   +E++S+AV+VN    RL  
Sbjct: 308 EALGGEAEGSTGARSNRTAADEIVNYEIGSTRSEVIREPGDVEKISVAVLVNGIYNRLPN 367

Query: 371 VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
             G    + +    +  + ++V +A G +++RGDT+++ S+ F++
Sbjct: 368 --GDVEYEERPPEEIERLTRLVESAVGYDAQRGDTVSVESLRFMD 410


>gi|83944186|ref|ZP_00956642.1| flagellar M-ring protein [Sulfitobacter sp. EE-36]
 gi|83845053|gb|EAP82934.1| flagellar M-ring protein [Sulfitobacter sp. EE-36]
          Length = 548

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 134/444 (30%), Positives = 225/444 (50%), Gaps = 11/444 (2%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           ++L    +  ++L +     V  P Y  LY  L ++  N I   L+ A  +  +S++G+S
Sbjct: 1   MMLGGAGIGVVLLMILGIGAVTRPDYAPLYSNLSITSANSIEATLANAGFNAMVSEDGTS 60

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           ISVP     +AR+ LA  G+P    + G+ELFD+ +   + SF+Q+I ++RA+EGE+AR+
Sbjct: 61  ISVPRGDAVRARMVLAETGMPIDG-DPGWELFDESSGLAMNSFLQKINKMRAMEGELARS 119

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVP 200
           IQ++ GI +ARVH+V+PD   F +    P AS+++R  +      K A A+ +LVA+AV 
Sbjct: 120 IQTLDGISSARVHLVLPDREPFSRDAPAPRASIILRPESGRAVTRKQAVAVSNLVASAVA 179

Query: 201 NLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRS 260
           +LD+  VTVL ++G+ + A   + +  G   S    I+  +   I   L A +G  N R 
Sbjct: 180 DLDISRVTVLSASGETILAEGPDGSSQGGVQSAKAGIEDRLSQEIQNILTARVGAGNARV 239

Query: 261 AVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA-VTVEQNMPHVSDRK 319
            V  EL    + I E  YDPD +V RS     + Q   T   E+  V VE N+P      
Sbjct: 240 HVNVELTTQREVIVEQTYDPDQQVVRSTETKSEDQ---TGTKEAGNVGVENNIPAALADG 296

Query: 320 VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQG 379
                S   ++  +E   YEI         +   + R+S+AV+VN   +  V G      
Sbjct: 297 NGAGTSTRRSE-ADEIVQYEIGNTRREIVREAGDVRRMSVAVLVNG--IYNVDGSDVIYA 353

Query: 380 -KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFAT 438
            +    LA + ++V  A G ++ RGD++++ SM F++  +     +  S  D LS +  +
Sbjct: 354 ERTPEELARLGELVKTAVGFDTTRGDSVSVDSMRFMDYSMDLGDPIDKSIGDELSENVVS 413

Query: 439 VINALVFLVGTLLVTFLGLHALRR 462
           ++  ++ L+   L+   G+  + R
Sbjct: 414 IVRGVLALLVVGLILVFGVRPMLR 437


>gi|46201261|ref|ZP_00055409.2| COG1766: Flagellar biosynthesis/type III secretory pathway
           lipoprotein [Magnetospirillum magnetotacticum MS-1]
          Length = 560

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 133/447 (29%), Positives = 227/447 (50%), Gaps = 18/447 (4%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           D +  F +    LG  R+  +A V +  +  F+     V +P  + LY  L++ D  +I 
Sbjct: 6   DDVNAFLQMLRGLGPMRLAAIAGVGVSILGFFIYLMSRVAAPQMELLYGDLDLGDSKQII 65

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L+   I + +  +G+ + VP       R+ +A Q LP+    +GYELFDK ++ G TS
Sbjct: 66  EKLTADKIPYELRKDGTEVWVPKDRKLDLRVRMAEQALPAGGRMAGYELFDKQDALGSTS 125

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           F Q IT VRALEGE+++TI+SI  + AARVH+V+P   +F +    P+ASV+I+      
Sbjct: 126 FQQNITMVRALEGELSKTIRSIDKVKAARVHLVLPKREAFSRDTQEPSASVIIKMNGSQR 185

Query: 185 YKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQA-IQHE 240
               +  AI+HL+AAAVP +    ++++D  G LL    E  +    ++   ++   + +
Sbjct: 186 LDKGQVSAIQHLIAAAVPKMKPSRISIVDDKGTLLAKGFENSKEYQAQTAEDMKVKTEAK 245

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           +   I   L   LG    R+ V  ++++      E  +DP++KV RS     + ++S+ +
Sbjct: 246 LVKTIEDLLERSLGPGRVRAEVTVDMDLSQATTTEETFDPETKVVRSQVTVNEGEQSQDA 305

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           +P + VTV+QN+P  +       R+    +K +E  NYEI+ K+ +T  +  ++ ++S A
Sbjct: 306 EP-TPVTVQQNLPDPNASSGGNIRTSTKINKNQETVNYEISRKTKSTVREMGEIRKVSAA 364

Query: 361 VVVNKGRLTEVLGRSADQGKIDSY-------LAEINKIVSAATGINSRRGDTITITSMDF 413
           V+V+      V  +SAD GK  SY       L++I  +V +A G    R D + + SM F
Sbjct: 365 VIVDG-----VREQSAD-GKQTSYRDRTAEELSQIEALVKSAIGYTKDRDDQVKVASMPF 418

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVI 440
            + +          F+  + R F   I
Sbjct: 419 YKGEELLQAEEPGEFIFGMRRDFVEKI 445


>gi|254294565|ref|YP_003060588.1| flagellar M-ring protein FliF [Hirschia baltica ATCC 49814]
 gi|254043096|gb|ACT59891.1| flagellar M-ring protein FliF [Hirschia baltica ATCC 49814]
          Length = 568

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 163/570 (28%), Positives = 285/570 (50%), Gaps = 41/570 (7%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDN--LYVKLEVSDVNRI 63
           + +   K  T+ G+ RI+   + ++V  ++     F +     D   LY  L++++   I
Sbjct: 3   ETVSIIKKITNGGQMRII---AALMVVALVGAGLGFIMLRGGADEALLYSGLDLTESAEI 59

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           S  L +ANI + I  +G+SI V    V  AR+ L+ +GLP+  +  GYE+FDK  + G T
Sbjct: 60  SGRLDQANISYTIRGDGASIFVNRDQVLDARMMLSEEGLPTRGA-MGYEIFDKSEALGTT 118

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI----RA 179
           SF+Q I RVRALEGE+ARTI S+  I  +RVH+V+P+   F +    P+ASV+I    R 
Sbjct: 119 SFVQNINRVRALEGELARTISSLDNIRGSRVHLVLPERRLFERGTQTPSASVVISVAGRG 178

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQ-A 236
           + PS  +   AIR+L+A +VPNL++  +T+LD  G+LL A     E    G S    Q  
Sbjct: 179 MLPSQVR---AIRNLIAGSVPNLEVNRITLLDDKGRLLAAGAENSENGFSGGSADERQTG 235

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           I+ +I   +   + +  G    R  V A+++ +       ++DP+ +V RS   ++D+ R
Sbjct: 236 IEDQIRNKVLSVVESVTGPGAARVQVAADIDFNRITQSSEIFDPEGRVIRSSTTTEDSSR 295

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPL-PRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
             +++P  AVT E N+P  +    P  P S   T+  +E +NYEI+  +     +  ++ 
Sbjct: 296 ESSTEPAGAVTAENNIPAGTAADGPADPTSQAETNHLQETTNYEISKTTKTEITEGGRIR 355

Query: 356 RLSIAVVVNKGRLTEVLGRSADQG------KIDSYLAEINKIVSAATGINSRRGDTITIT 409
           ++S+AV ++  R+       AD+       +    +A I  +V +A G +  RGD + + 
Sbjct: 356 KISVAVALDDVRVP-----GADETEATFAPRTPEEIANIKTLVRSAVGYDEARGDIVEVV 410

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFL-VGTLLVTFLGLHALRRLHNIDD 468
           ++ F+  +   +  ++   M  L+++    I+ L  L VG +L+    L  L +      
Sbjct: 411 NVSFMRPESSVNLAIEDPGMLGLTKNDIMRISELAALFVGAVLLIIFVLRPLVKGLMSPS 470

Query: 469 AKKGE---VGGKSILSPPPISSAVTTGLMPNDNIAL----DSSNQDIFSHSR-NLQ-SRI 519
           A+ G+   VG   +   P  S      +  ++N+ L    D  N  I    +  L  +RI
Sbjct: 471 AESGDSFYVGEAKL---PGGSGNAAQKVTLSENLVLPGSGDGGNGQITEDDQFGLDVARI 527

Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKW 549
           +  V+  S  ++  ++E + +   +I+R W
Sbjct: 528 SGKVNASSVKKISEVVESHPDESIQIIRAW 557


>gi|188583761|ref|YP_001927206.1| flagellar MS-ring protein [Methylobacterium populi BJ001]
 gi|179347259|gb|ACB82671.1| flagellar M-ring protein FliF [Methylobacterium populi BJ001]
          Length = 538

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 149/542 (27%), Positives = 262/542 (48%), Gaps = 23/542 (4%)

Query: 15  TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF 74
           T LG  RI  +A+V L  +  F      V+ P    L+  L + D + +   L    I +
Sbjct: 9   TKLGPARIAAMAAVTLTLVGFFAFVILRVSRPDMGVLFSDLSMQDSSAVIRELDARGIAY 68

Query: 75  RISDN-GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
                 G ++  P + + K R+  A +GLP+     GYE+FDK ++F  TSF+Q +  +R
Sbjct: 69  ETKGELGQTVLAPRADLAKLRMDFAGKGLPAQG-GIGYEIFDKGDAFSSTSFVQNVNHLR 127

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRH 193
           A+EGE+AR+I++I  + AARVH+V+P+   F +    P+A+++++ +         AIRH
Sbjct: 128 AMEGELARSIRAIGRVQAARVHLVIPERRLFERDREAPSAAIVVKLMGDLDPSQVRAIRH 187

Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKALAA 251
           L A+AV  L    V+++D  G+LL   A   E    G        I+  +   I + +A 
Sbjct: 188 LAASAVEGLKPERVSIVDERGRLLADGARGAEAEGAGALEERQAGIERRMRAQIEEIVAG 247

Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311
            +G    R  V AEL+++  + R   +DP+S+V RS +    ++ S T   E  V+V   
Sbjct: 248 IVGQGRARVQVTAELDLNRVESRSESFDPESRVVRSTQTR--SENSLTGGAEGQVSVGNE 305

Query: 312 MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV 371
           +P  +  + P P+  +++ K EE +NYEI+  +   T +  +L+RLS+AV+V+       
Sbjct: 306 LPGANQNQPP-PQQKDSSQKNEEVTNYEISRVTKVETLEGGRLKRLSVAVLVDGVYAPGA 364

Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN----QLFNSGTVQVS 427
            G++A Q + D+ +A I  +V  A G +  RGD + + ++ F E     +    G +Q S
Sbjct: 365 DGKAAYQPRSDAEIARIAALVRTAVGYDKARGDQVEVVNLRFAETPAAAEFAEPGLIQ-S 423

Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISS 487
           F+         ++   V  + TL+V    +  L R     DA    + G ++        
Sbjct: 424 FLSPSKEDVMRLVELAVLSLLTLIVLMAVVRPLLRRVLESDAPVAALAGPALALAGAGGE 483

Query: 488 AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILR 547
             T        IA+  ++ + F  S    ++IN  +  ++  R++ M+  +     ++LR
Sbjct: 484 GPT-------EIAVRENSTNKFLES----AKINGQIQAETVERVVDMVRASPTETVEVLR 532

Query: 548 KW 549
            W
Sbjct: 533 NW 534


>gi|92116309|ref|YP_576038.1| flagellar MS-ring protein [Nitrobacter hamburgensis X14]
 gi|91799203|gb|ABE61578.1| flagellar M-ring protein FliF [Nitrobacter hamburgensis X14]
          Length = 540

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 155/556 (27%), Positives = 264/556 (47%), Gaps = 37/556 (6%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           LL F K    LG +R++ + +V    I  F      V +P    L+  L V D + I   
Sbjct: 4   LLAFLKG---LGPSRLMAMVAVTTALIGFFAFVIMRVTAPQMTTLFTDLSVEDSSGIIKD 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L    I + + ++G+ I VP   V + R+ LA  GLP      GYE+FDK ++ G TSF+
Sbjct: 61  LERQAIPYELRNDGAVIMVPKDKVTRLRMKLAEAGLPKGG-GVGYEIFDKSDALGTTSFV 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
           Q I R+RALEGE++RTI++I  I  ARVH+V+PD   F +   +P+AS+++R       +
Sbjct: 120 QNINRLRALEGELSRTIKAIDRIQDARVHLVLPDRPLFSREAPQPSASIVLRVRGGLEPQ 179

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQAIQHEIEM 243
              AIRHLVA+AV  L    V+++D TG+LL   +A + +     +  +   A +  +  
Sbjct: 180 QIRAIRHLVASAVNGLKPQRVSIVDETGQLLADGSATDADGTTGDERRT---AFEKRMRN 236

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            +   +++ +G    R  + A+ + +        +DP+ +V RS +  +++  S T+   
Sbjct: 237 QVEAIVSSVVGSGRARVQLSADFDYNKITQTSDKFDPEGRVLRSSQTREES--SVTADNN 294

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
             VTV   +P       P P + + + K EE +NYEI+  +     +  ++ R+S+AV+V
Sbjct: 295 GQVTVNNELPGNQQSDNPSP-ARDQSKKSEETNNYEISRTTKTEVTEAGRVNRISVAVLV 353

Query: 364 NKGRLTEVLGRSADQGKI------DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           + G  T+      DQG++         L  I  +V +A G + +RGD + + ++ F E  
Sbjct: 354 D-GTYTK-----NDQGQMVYAERSKEQLDRIATLVRSAIGFDQKRGDQVEVVNLKFAEPP 407

Query: 418 L---FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL-RRLHNIDDAKKGE 473
                      +  M +       VI+  V L+  L+VTF+ +  L RR+   + A  G 
Sbjct: 408 AAVPLAEPAGLLGMMALTKDDVMYVIDLAVMLLLGLVVTFMVIRPLVRRILASEPAPAGA 467

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
              +    P P  +    G    + +   S+   +        +++   V  QS  R+  
Sbjct: 468 APSQ---LPAPADATAQAGATGQNLVPGGSATAQLIDV-----AQVQGQVHAQSVHRVGE 519

Query: 534 MIEINEERFAKILRKW 549
           + E N    A I+R+W
Sbjct: 520 LAERNPAETASIIRQW 535


>gi|163744330|ref|ZP_02151690.1| flagellar M-ring protein FliF [Oceanibulbus indolifex HEL-45]
 gi|161381148|gb|EDQ05557.1| flagellar M-ring protein FliF [Oceanibulbus indolifex HEL-45]
          Length = 567

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 140/467 (29%), Positives = 246/467 (52%), Gaps = 21/467 (4%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVIL-VPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           ++Q+++  K    LG  R+ +L  + L +   +F+ AR  + +P Y  +Y +L     ++
Sbjct: 1   MNQIVENLKD---LGPKRLALLGGIGLAITAAVFIGARTIL-APTYVPVYSQLSPGTASQ 56

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +   L +A +   +S NG +ISV  + + +AR+ LA  GLP      G+E+FD ++  G+
Sbjct: 57  MMQTLEQAGLTVDLSRNGDTISVAENDIARARMALADAGLPGEGV-PGWEIFDNMSGMGM 115

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-IN 181
            SFMQ++ R+RALEGE+AR+IQ+ISGI AARVH+V+P+  +F +  A  + SV++R+  N
Sbjct: 116 NSFMQKVNRLRALEGELARSIQTISGIKAARVHLVLPERAAFSRSRAEASGSVIVRSQAN 175

Query: 182 PSVYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQA---- 236
            S+ +S A+AI+ LVA+AV +L+  +VTVL ++G+ + A    ++  G S   +Q     
Sbjct: 176 ASMTRSQAQAIQALVASAVADLEAQNVTVLSASGETILA----KDDGGSSDFSLQGQRSM 231

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           I+ ++   +   L A +G  N R  V  +L  + +      +DP  +V RSI  ++    
Sbjct: 232 IEEQLAQKVESILNARVGPGNARVRVSVDLTTEREVRVSRTFDPAQQVARSIE-TRVRNS 290

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
           +ET      V V  N+P                 + +E  NYEI +       +   +ER
Sbjct: 291 NETDPATGTVDVANNIPDELRDDAGGGAGQSTRSENDEIINYEIGSVQSEMVREPGDIER 350

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL-- 414
           +S+AV+VN    T   G      + +  +  ++++VS A G +  RGD + + S+ FL  
Sbjct: 351 ISVAVLVNGSYGTLPDGSEGYIERSEEEMQRLSQLVSTAIGFDQNRGDQVQVDSLQFLDF 410

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461
           +++  N G   +    +L+ +  T++ +L  L    ++  LG   LR
Sbjct: 411 DSEFSNPGGRGLGA--VLADNAMTILRSLFALALVAIIMLLGARPLR 455


>gi|332296504|ref|YP_004438427.1| flagellar M-ring protein FliF [Thermodesulfobium narugense DSM
           14796]
 gi|332179607|gb|AEE15296.1| flagellar M-ring protein FliF [Thermodesulfobium narugense DSM
           14796]
          Length = 515

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 133/402 (33%), Positives = 211/402 (52%), Gaps = 29/402 (7%)

Query: 21  RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80
           R L+L+ V LV  +LF+    F+  P    L+  L  SD   I   L E  I + + D+G
Sbjct: 23  RFLLLSGVSLV-FILFVFGSLFLFKPQMAPLFTHLSSSDGAAIVAKLKEQKIPYELKDSG 81

Query: 81  SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140
           ++I VP   V + R+ LAAQGLP  S   G+E+FDK N F  T F Q +  VRAL+GE+A
Sbjct: 82  TTILVPKDKVYELRLSLAAQGLPEGS-GVGFEIFDKNNLF-TTDFTQRVDYVRALQGELA 139

Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS---VYKSAEAIRHLVAA 197
           RTI  I+G+  ARVHIV+P  G F       +ASVM+  + P      K  EAI  LV+ 
Sbjct: 140 RTISQINGVEGARVHIVLPKTGVFVSQDIPASASVMLN-LKPGQSISEKETEAIAFLVSR 198

Query: 198 AVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255
           AV  L   +VT++D+ G+LL+A  N  +  +  +   I +  + E++  I   L   LG 
Sbjct: 199 AVEGLKPENVTIMDTRGELLSADLNFNKSGLSQREFDIKRKYESEVQRKIQTMLDTMLGP 258

Query: 256 DNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQRSETSQPES-AVTVEQN 311
                 V AELN+ + ++++I Y P    + +  S +++ D  +S+ + P++ + TV Q 
Sbjct: 259 GKSVVRVSAELNLASSEVKKITYSPVVGQNGIVISSKVTTDTSKSQNTTPQTPSATVPQG 318

Query: 312 MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV 371
           +P     + P P S  ++ K EE +NY++N +     + +  ++RL+++V+V+    T  
Sbjct: 319 IPSY---QTPAPTSSSSSRKTEEITNYDVNKQEEMIKNPSGDIKRLTVSVIVDGTPQT-- 373

Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
                        L  +   VS A GI  +RGD++ + +M F
Sbjct: 374 -----------VNLQALTAAVSNAAGILPQRGDSVDVQAMPF 404


>gi|218532348|ref|YP_002423164.1| flagellar MS-ring protein [Methylobacterium chloromethanicum CM4]
 gi|218524651|gb|ACK85236.1| flagellar M-ring protein FliF [Methylobacterium chloromethanicum
           CM4]
          Length = 540

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 126/405 (31%), Positives = 213/405 (52%), Gaps = 7/405 (1%)

Query: 15  TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF 74
           T LG  RI  +A+V L  +  F      V+ P    L+  L + D + +   L    I +
Sbjct: 9   TKLGPARIAAMAAVTLTLVGFFAFVILRVSRPDMGVLFSDLSLQDSSSVIRELDARGITY 68

Query: 75  RI-SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
               + G ++  P + + K R+  A +GLPS     GYE+FDK ++F  TSF+Q +  +R
Sbjct: 69  ETKGEMGQTVLAPRADLAKLRMDFAGKGLPSQG-GIGYEIFDKGDAFSSTSFVQNVNHLR 127

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRH 193
           A+EGE+AR+I++I  + AARVH+V+P+   F +    P+A+++++ +         AIRH
Sbjct: 128 AMEGELARSIRAIGRVQAARVHLVIPERRLFERDREAPSAAIVVKLMGDLDASQVRAIRH 187

Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKALAA 251
           L A+AV  L    V+++D  G+LL   A   E +  G        I+  +   I + +A 
Sbjct: 188 LAASAVEGLKPERVSIVDERGRLLADGARGAEADGAGALEERQAGIERRMRSQIEEIVAG 247

Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311
            +G    R  V AEL+++  + R   +DP+S+V RS +    ++ S T   E  VTV   
Sbjct: 248 IVGQGRARVQVTAELDLNRVESRSESFDPESRVVRSTQTR--SENSLTGGAEGQVTVGNE 305

Query: 312 MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV 371
           +P  +++  P P+  +++ K EE +NYEI+  +   T +  +L+RLS+AV+V+       
Sbjct: 306 LPG-ANQNQPAPQQKDSSQKNEETTNYEISRVTKVETLEGGRLKRLSVAVLVDGVYAPGA 364

Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
            G+ A Q + D+ +A I  +V  A G +  RGD + + ++ F E 
Sbjct: 365 DGKPAYQPRSDAEIARITALVRTAVGYDKVRGDQVEVVNLRFAET 409


>gi|240140910|ref|YP_002965390.1| flagellar biosynthesis; basal-body MS(membrane and
           supramembrane)-ring and collar protein [Methylobacterium
           extorquens AM1]
 gi|240010887|gb|ACS42113.1| flagellar biosynthesis; basal-body MS(membrane and
           supramembrane)-ring and collar protein [Methylobacterium
           extorquens AM1]
          Length = 540

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 126/405 (31%), Positives = 213/405 (52%), Gaps = 7/405 (1%)

Query: 15  TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF 74
           T LG  RI  +A+V L  +  F      V+ P    L+  L + D + +   L    I +
Sbjct: 9   TKLGPARIAAMAAVTLTLVGFFAFVILRVSRPDMGVLFSDLSLQDSSSVIRELDARGITY 68

Query: 75  RI-SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
               + G ++  P + + K R+  A +GLPS     GYE+FDK ++F  TSF+Q +  +R
Sbjct: 69  ETKGEMGQTVLAPRADLAKLRMDFAGKGLPSQG-GIGYEIFDKGDAFSSTSFVQNVNHLR 127

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRH 193
           A+EGE+AR+I++I  + AARVH+V+P+   F +    P+A+++++ +         AIRH
Sbjct: 128 AMEGELARSIRAIGRVQAARVHLVIPERRLFERDREAPSAAIVVKLMGDLDASQVRAIRH 187

Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKALAA 251
           L A+AV  L    V+++D  G+LL   A   E +  G        I+  +   I + +A 
Sbjct: 188 LAASAVEGLKPERVSIVDERGRLLADGARGAEADGAGALEERQAGIERRMRSQIEEIVAG 247

Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311
            +G    R  V AEL+++  + R   +DP+S+V RS +    ++ S T   E  VTV   
Sbjct: 248 IVGQGRARVQVTAELDLNRVESRSESFDPESRVVRSTQTR--SENSLTGGAEGQVTVGNE 305

Query: 312 MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV 371
           +P  +++  P P+  +++ K EE +NYEI+  +   T +  +L+RLS+AV+V+       
Sbjct: 306 LPG-ANQNQPAPQQKDSSQKNEETTNYEISRVTKVETLEGGRLKRLSVAVLVDGVYAPGA 364

Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
            G+ A Q + D+ +A I  +V  A G +  RGD + + ++ F E 
Sbjct: 365 NGKPAYQPRSDAEIARITALVRTAVGYDKVRGDQVEVVNLRFAET 409


>gi|254563420|ref|YP_003070515.1| basal-body MS biosynthesis protein [Methylobacterium extorquens
           DM4]
 gi|254270698|emb|CAX26702.1| flagellar biosynthesis; basal-body MS(membrane and
           supramembrane)-ring and collar protein [Methylobacterium
           extorquens DM4]
          Length = 540

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 126/405 (31%), Positives = 213/405 (52%), Gaps = 7/405 (1%)

Query: 15  TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF 74
           T LG  RI  +A+V L  +  F      V+ P    L+  L + D + +   L    I +
Sbjct: 9   TKLGPARIAAMAAVTLTLVGFFAFVILRVSRPDMGVLFSDLSLQDSSSVIRELDARGITY 68

Query: 75  RI-SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
               + G ++  P + + K R+  A +GLPS     GYE+FDK ++F  TSF+Q +  +R
Sbjct: 69  ETKGEMGQTVLAPRADLAKLRMDFAGKGLPSQG-GIGYEIFDKGDAFSSTSFVQNVNHLR 127

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRH 193
           A+EGE+AR+I++I  + AARVH+V+P+   F +    P+A+++++ +         AIRH
Sbjct: 128 AMEGELARSIRAIGRVQAARVHLVIPERRLFERDREAPSAAIVVKLMGDLDASQVRAIRH 187

Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKALAA 251
           L A+AV  L    V+++D  G+LL   A   E +  G        I+  +   I + +A 
Sbjct: 188 LAASAVEGLKPERVSIVDERGRLLADGARGAEADGAGALEERQAGIERRMRSQIEEIVAG 247

Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311
            +G    R  V AEL+++  + R   +DP+S+V RS +    ++ S T   E  VTV   
Sbjct: 248 IVGQGRARVQVTAELDLNRVESRSESFDPESRVVRSTQTR--SENSLTGGAEGQVTVGNE 305

Query: 312 MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV 371
           +P  +++  P P+  +++ K EE +NYEI+  +   T +  +L+RLS+AV+V+       
Sbjct: 306 LPG-ANQNQPAPQQKDSSQKNEETTNYEISRVTKVETLEGGRLKRLSVAVLVDGVYAPGA 364

Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
            G+ A Q + D+ +A I  +V  A G +  RGD + + ++ F E 
Sbjct: 365 DGKPAYQPRSDAEIARITALVRTAVGYDKVRGDQVEVVNLRFAET 409


>gi|170696757|ref|ZP_02887869.1| flagellar M-ring protein FliF [Burkholderia graminis C4D1M]
 gi|170138336|gb|EDT06552.1| flagellar M-ring protein FliF [Burkholderia graminis C4D1M]
          Length = 600

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 129/409 (31%), Positives = 207/409 (50%), Gaps = 27/409 (6%)

Query: 23  LILASVILVPIM--LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80
           LI A  +LV I+  LF+ +R    +P Y  LY  L   D   I  AL +ANI ++ S+ G
Sbjct: 67  LIFAVALLVAIVAGLFLWSR----APDYKVLYSNLSDRDGGAIITALQQANIPYKFSEAG 122

Query: 81  SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140
            +I VPS  V + R+ LA+QGLP S S  G+EL D    FG++ F ++I   RALEGE+ 
Sbjct: 123 GAILVPSEQVHEMRLRLASQGLPKSGS-VGFELMDN-QKFGISQFAEQINYQRALEGELE 180

Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAA 198
           RTI+S+S + +ARVH+ +P    F +    P+ASV++           +  AI H+V++A
Sbjct: 181 RTIESVSSVKSARVHLAIPKPSVFVRDKEAPSASVLVNLYPGRALDEGQVLAITHMVSSA 240

Query: 199 VPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNF 258
           VP + +  VT+LD  G LLT   +   +    L   Q I+   +  I+  LA   G  N 
Sbjct: 241 VPEMPVKGVTILDQDGNLLTQPSVGGGLDASQLKYRQQIERSTQQRIDAILAPLFGSGNA 300

Query: 259 RSAVVAELNMDTQQIREIVYDPDSKVER-SIRLSKDAQRSETS-------------QPES 304
            S V A+++    +     Y P+   ++ +IR  + +  +E S             QP  
Sbjct: 301 HSQVSADIDFSRSEQTSENYGPNGNPQQAAIRSQQSSTATEMSQGGASGVPGALSNQPPQ 360

Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
             +   N P  +   V    +   +D+K+  +NYE++            ++RLS+AVVVN
Sbjct: 361 PASAPINAPAGASGGV---TTTPVSDRKDMTTNYELDKTVRHLEQPMGGIKRLSVAVVVN 417

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
             R+ +  G +  Q      LA++N++V  A G +++RGD++ + +  F
Sbjct: 418 YLRVVDAKGHATMQPVTADKLAQVNQLVKDAMGFDAQRGDSVNVVNSPF 466


>gi|163853490|ref|YP_001641533.1| flagellar MS-ring protein [Methylobacterium extorquens PA1]
 gi|163665095|gb|ABY32462.1| flagellar M-ring protein FliF [Methylobacterium extorquens PA1]
          Length = 540

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 126/405 (31%), Positives = 213/405 (52%), Gaps = 7/405 (1%)

Query: 15  TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF 74
           T LG  RI  +A+V L  +  F      V+ P    L+  L + D + +   L    I +
Sbjct: 9   TKLGPARIAAMAAVTLTLVGFFAFVILRVSRPDMGVLFSDLSLQDSSSVIRELDARGITY 68

Query: 75  RI-SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
               + G ++  P + + K R+  A +GLPS     GYE+FDK ++F  TSF+Q +  +R
Sbjct: 69  ETKGEMGQTVLAPRADLAKLRMDFAGKGLPSQG-GIGYEIFDKGDAFSSTSFVQNVNHLR 127

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRH 193
           A+EGE+AR+I++I  + AARVH+V+P+   F +    P+A+++++ +         AIRH
Sbjct: 128 AMEGELARSIRAIGRVQAARVHLVIPERRLFERDREAPSAAIVVKLMGDLDASQVRAIRH 187

Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKALAA 251
           L A+AV  L    V+++D  G+LL   A   E +  G        I+  +   I + +A 
Sbjct: 188 LAASAVEGLKPERVSIVDERGRLLADGARGAEADGAGALEERQAGIERRMRSQIEEIVAG 247

Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311
            +G    R  V AEL+++  + R   +DP+S+V RS +    ++ S T   E  VTV   
Sbjct: 248 IVGQGRARVQVTAELDLNRVESRSESFDPESRVVRSTQTR--SENSLTGGAEGQVTVGNE 305

Query: 312 MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV 371
           +P  +++  P P+  +++ K EE +NYEI+  +   T +  +L+RLS+AV+V+       
Sbjct: 306 LPG-ANQNQPAPQQKDSSQKNEETTNYEISRVTKVETLEGGRLKRLSVAVLVDGVYAPGA 364

Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
            G+ A Q + D+ +A I  +V  A G +  RGD + + ++ F E 
Sbjct: 365 DGKPAYQPRSDAEIARIAALVRTAVGYDKVRGDQVEVVNLRFAET 409


>gi|307731342|ref|YP_003908566.1| flagellar M-ring protein FliF [Burkholderia sp. CCGE1003]
 gi|307585877|gb|ADN59275.1| flagellar M-ring protein FliF [Burkholderia sp. CCGE1003]
          Length = 600

 Score =  184 bits (466), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 136/446 (30%), Positives = 218/446 (48%), Gaps = 29/446 (6%)

Query: 35  LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKAR 94
           LF+ +R    +P Y  LY  L   D   I  AL +ANI ++ SD G +I VP+  V + R
Sbjct: 81  LFLWSR----APDYKVLYSNLSDRDGGAIITALQQANIPYKFSDAGGAILVPAEQVHEMR 136

Query: 95  IHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARV 154
           + LA+ GLP S S  G+EL D    FG++ F ++I   RALEGE+ RTIQSIS + +ARV
Sbjct: 137 LRLASLGLPKSGS-VGFELMDN-QKFGISQFAEQINYQRALEGELERTIQSISSVKSARV 194

Query: 155 HIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDS 212
           H+ +P    F +    P+ASV++           +  AI H+V++AVP + +  VT+LD 
Sbjct: 195 HLAIPKPSVFVRDKEAPSASVLVNLYPGRALDEGQVLAITHMVSSAVPEMPVKGVTILDQ 254

Query: 213 TGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272
            G LLT   +   +    L   Q I+   +  I+  LA   G  N  S V A+++    +
Sbjct: 255 DGNLLTQPSVGGGLDASQLKYRQQIERNTQQRIDAILAPLFGAGNAHSQVSADIDFSRSE 314

Query: 273 IREIVYDPDSKVER-SIRLSKDAQRSETS-------------QPESAVTVEQNMPHVSDR 318
                Y P+   ++ +IR  + +  +E S             QP    +   N P+ +  
Sbjct: 315 QTSEAYGPNGNPQQAAIRSQQSSTATEMSQGGASGVPGALSNQPPQPASAPINAPNGASS 374

Query: 319 KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ 378
            V    +   +D+K+  +NYE++            ++RLS+AVVVN  R+ +  GR+  Q
Sbjct: 375 SV---TTTPVSDRKDMTTNYELDKTVRHLEQPMGGIKRLSVAVVVNYLRVVDGKGRATMQ 431

Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS--RHF 436
                 LA++N++V  A G +++RGD++ + +  F      N+        D+L+  +  
Sbjct: 432 PVSADKLAQVNQLVKDAMGFDAQRGDSVNVVNSPFTAELDPNADLPWWRTPDMLALYKQI 491

Query: 437 ATVINALVFLVGTLLVTFLGLHALRR 462
           AT +   +  V   L   +   ALRR
Sbjct: 492 ATYLG--IGAVALFLYFVMVKPALRR 515


>gi|118593642|ref|ZP_01551018.1| flagellar M-ring protein [Stappia aggregata IAM 12614]
 gi|118433753|gb|EAV40414.1| flagellar M-ring protein [Stappia aggregata IAM 12614]
          Length = 537

 Score =  183 bits (465), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 160/557 (28%), Positives = 273/557 (49%), Gaps = 37/557 (6%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++ L++F K+   LG  RI  + +V  + + +F    F V +P    LY +L + D   I
Sbjct: 1   MNGLVEFIKT---LGAARIAAMGAVAAILVGVFAFIIFRVTAPQMTTLYNELTLEDSAAI 57

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    + F I+  G+SI VP+  V + R+ LAA+GLP+  S  GYE+FD+ ++ G T
Sbjct: 58  VSQLESQGVQFEIARQGASILVPNEQVARLRMQLAAEGLPTGGS-IGYEIFDRSDTLGAT 116

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AI 180
           SF+Q I  +RA+EGE++RTI S+  I AARVH+V+P+   F+K    P+AS+++    A+
Sbjct: 117 SFVQNINHLRAMEGELSRTIGSLDRIRAARVHLVIPERQLFQKDRRPPSASIVLNVRGAL 176

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSI-VQAI 237
            P   +   A++HLVA AV  L+   V+++D +G+LL +     E  +L  SL      +
Sbjct: 177 GPGEIR---AVQHLVATAVDGLEPDRVSIVDESGRLLASGVGNDEDGLLTNSLQERTVEV 233

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           +  +   I + L + +G    R  V AE++ +        +DPD +V RS + SK+   S
Sbjct: 234 EGRLRNQIEEILNSVVGPGRARVRVNAEVDYNRLTETTETFDPDGQVVRSTQ-SKEEASS 292

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
             S+    VTV   +P+    +    R  + +   EE  NYEI+  +     +  K++RL
Sbjct: 293 AVSR-NGQVTVANQLPNADAGQGGAER--DTSSVTEEIVNYEISHSTRTEVVEAGKIKRL 349

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL--- 414
           S+AV+V+     +  G S    +    L  I  +V +A G +S RGD + + ++ F    
Sbjct: 350 SVAVLVDGTYQPDGNGGSTYTPRSQETLDRIAVLVRSAVGFDSERGDVVEVVNLQFALPP 409

Query: 415 ENQLFNSGTVQVSFM--DILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           ++ L         F   DI+   FA +   ++FL+  +L+ F+    LRR+   ++ +  
Sbjct: 410 QDDLLAESDSLFDFTRNDII--RFAEL--GVLFLIAVMLLLFVVRPLLRRIVTPEEKQPQ 465

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
           E      L   P  + V    +P +    D    +    ++   +   S ++K  D    
Sbjct: 466 E------LMIGPDGTLVIETEVPQEEAVEDEFVIEWLEQAKQEGAMQASSIAKVGD---- 515

Query: 533 HMIEINEERFAKILRKW 549
            MI+ +      I+R W
Sbjct: 516 -MIKDHPTEAVTIVRGW 531


>gi|91785611|ref|YP_560817.1| flagellar MS-ring protein [Burkholderia xenovorans LB400]
 gi|91689565|gb|ABE32765.1| Flagellar FliF M-ring protein [Burkholderia xenovorans LB400]
          Length = 600

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 136/446 (30%), Positives = 215/446 (48%), Gaps = 30/446 (6%)

Query: 35  LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKAR 94
           LF+ +R    +P Y  LY  L   D   I  AL  ANI ++ SD G +I VP+  V + R
Sbjct: 80  LFLWSR----APDYKVLYSNLSDRDGGAIITALQAANIPYKFSDAGGAILVPAEQVHEMR 135

Query: 95  IHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARV 154
           + LA+QGLP S S  G+EL D    FG++ F ++I   RALEGE+ RT++SIS + +ARV
Sbjct: 136 LRLASQGLPKSGS-VGFELMDN-QKFGISQFAEQINYQRALEGELERTVESISSVKSARV 193

Query: 155 HIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDS 212
           H+ +P    F +    P+ASV++           +  AI H+V++AVP++ +  VT+LD 
Sbjct: 194 HLAIPKPSVFVRDKEAPSASVLVNLYPGRALDEGQVLAITHMVSSAVPDMPVKGVTILDQ 253

Query: 213 TGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272
            G LLT       +    L   Q I+   +  I+  LA   G  N  S V A+++    +
Sbjct: 254 DGNLLTQPSTGSGLDASQLKYRQQIERSTQQRIDAILAPLFGSGNAHSQVSADIDFSRSE 313

Query: 273 IREIVYDPDSKVER-SIRLSKDAQRSETS-------------QPESAVTVEQNMPHVSDR 318
                Y P+   ++ +IR  + +  +E S             QP    +   N P  +  
Sbjct: 314 QTSENYGPNGNPQQAAIRSQQSSSATEMSQGGASGVPGALSNQPPQPASAPINAPTGASG 373

Query: 319 KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ 378
               P S    D+K+  +NYE++            ++RLS+AVVVN  R+ +  G +  Q
Sbjct: 374 VTTTPVS----DRKDSTTNYELDKTVRHLERPMGGIKRLSVAVVVNYLRVVDAKGHATMQ 429

Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDI--LSRHF 436
                 LA++N++V  A G ++ RGD++ + +  F  +   N+        D+  L+R  
Sbjct: 430 PVTADKLAQVNQLVKDAMGFDAARGDSVNVVNSPFTTDLDPNADLPWWRTPDMIALARQV 489

Query: 437 ATVINALVFLVGTLLVTFLGLHALRR 462
           AT +   +  V   L   +   ALRR
Sbjct: 490 ATYLG--IGAVALFLYFVMVKPALRR 513


>gi|323527692|ref|YP_004229845.1| flagellar M-ring protein FliF [Burkholderia sp. CCGE1001]
 gi|323384694|gb|ADX56785.1| flagellar M-ring protein FliF [Burkholderia sp. CCGE1001]
          Length = 600

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 135/446 (30%), Positives = 216/446 (48%), Gaps = 29/446 (6%)

Query: 35  LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKAR 94
           LF+ +R    +P Y  LY  L   D   I  AL +ANI ++ SD G +I VP+  V + R
Sbjct: 81  LFLWSR----APDYKVLYSNLSDRDGGAIITALQQANIPYKFSDAGGAILVPAEQVHEMR 136

Query: 95  IHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARV 154
           + LA+QGLP S S  G+EL D    FG++ F ++I   RALEGE+ RTI+SIS + +ARV
Sbjct: 137 LRLASQGLPKSGS-VGFELMDN-QKFGISQFAEQINYQRALEGELERTIESISSVKSARV 194

Query: 155 HIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDS 212
           H+ +P    F +    P+ASV++           +  AI H+V++AVP + +  VT+LD 
Sbjct: 195 HLAIPKPSVFVRDKEAPSASVLVNLFPGRALDEGQVLAITHMVSSAVPEMPVKGVTILDQ 254

Query: 213 TGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272
            G LLT       +    L   Q I+   +  I+  LA   G  N  S V A+++    +
Sbjct: 255 DGNLLTQPSTGGGLDASQLKYRQQIERNTQQRIDAILAPLFGAGNAHSQVSADIDFSRSE 314

Query: 273 IREIVYDPDSKVER-SIRLSKDAQRSETS-------------QPESAVTVEQNMPHVSDR 318
                Y P+   ++ +IR  + +  +E S             QP    +   N P+ +  
Sbjct: 315 QTSENYGPNGNPQQAAIRSQQSSTATEMSQGGASGVPGALSNQPPQPASAPINAPNGASS 374

Query: 319 KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ 378
            V    +   +D+K+  +NYE++            + RLS+AVVVN  R+ +  G +  Q
Sbjct: 375 SV---TTTPVSDRKDMTTNYELDKTVRHLEQPMGGIRRLSVAVVVNYLRVVDGKGHATMQ 431

Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS--RHF 436
                 LA++N++V  A G +++RGD++ + +  F      N+        D+L+  +  
Sbjct: 432 PVSADKLAQVNQLVKDAMGFDAQRGDSVNVVNSPFTAELDPNADLPWWRTPDMLALYKQI 491

Query: 437 ATVINALVFLVGTLLVTFLGLHALRR 462
           AT +   +  V   L   +   ALRR
Sbjct: 492 ATYLG--IGAVALFLYFVMVKPALRR 515


>gi|163781742|ref|ZP_02176742.1| Flagellar M-ring protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882962|gb|EDP76466.1| Flagellar M-ring protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 502

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 136/398 (34%), Positives = 205/398 (51%), Gaps = 32/398 (8%)

Query: 26  ASVILVPIMLF---MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           A V+ +P ++F   +    +   P Y  LY  L   D+N +   L +  + +++  +G +
Sbjct: 24  ALVVGLPAVIFSLLVTVLIYSLQPDYAVLYSNLSPEDMNAVLTELDKEGVKYKVGRDGRT 83

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP + V   R+ LAA+G+P+     GYELFDK ++ GL+ F Q +   RA+EGE+ RT
Sbjct: 84  ILVPENKVRDVRLKLAAKGIPNKGV-IGYELFDK-STIGLSEFQQRVNFKRAIEGELVRT 141

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLVAAAV 199
           I     I  ARVHI +P+   F +    P+ASV IR + P    + E   AIR+LVAA++
Sbjct: 142 ILRFKNIEDARVHIALPEKSIFLRDEKEPSASVFIR-LRPGAEITEEQVKAIRNLVAASI 200

Query: 200 PNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDN 257
            NL   +V V+D  G+ LTAN  E +  I  K L I +  + EIE  +  AL   LG  N
Sbjct: 201 ENLKPENVVVIDDKGRNLTANLDEGKEEISNKQLKIRREFEREIERKVQTALEEALGYGN 260

Query: 258 FRSAVVAELNMDTQQIREIVYDPD--SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV 315
            +  V  EL+    Q RE  YDPD  + V    R  K         P +A  +      V
Sbjct: 261 VKVRVSVELDFTKVQRREETYDPDMTAVVSEQKRKEKTTGAPVGGVPGAAANIPPGTGAV 320

Query: 316 SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS 375
             +   L      T+KKE  +NYE++ K + +  +  K++RLS+ V++NK  L +V   S
Sbjct: 321 QGQGGTL------TEKKETITNYEVSKKEVISVDNTLKIKRLSVGVIINK-ELKDVNEES 373

Query: 376 ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
                       I KIVSAA G++ +RGDT+++ ++ F
Sbjct: 374 ------------IKKIVSAAVGLDPKRGDTLSVVAVPF 399


>gi|75674797|ref|YP_317218.1| flagellar MS-ring protein [Nitrobacter winogradskyi Nb-255]
 gi|74419667|gb|ABA03866.1| flagellar FliF M-ring protein [Nitrobacter winogradskyi Nb-255]
          Length = 541

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 161/558 (28%), Positives = 269/558 (48%), Gaps = 40/558 (7%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           LL F K    LG +R++ + +V  V I  F      V +P    L+  L V D + I   
Sbjct: 4   LLAFLKG---LGASRLMAMVAVTAVLIGFFAFVIMRVTTPQMTTLFTDLSVEDSSGIIKD 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L    I F + ++G+ I VP   V + R+ LA  GLP      GYE+FDK ++ G TSF+
Sbjct: 61  LERQAIPFELRNDGAVIMVPKDKVTRLRMKLAEAGLPKGG-GVGYEIFDKSDALGTTSFV 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
           Q I R+RALEGE+ARTI++I  +  ARVH+V+P+   F +   +P+AS+++R       +
Sbjct: 120 QNINRLRALEGELARTIRAIDRVQDARVHLVLPERPLFTREAPQPSASIVLRVRGGLEPQ 179

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQAIQHEIEM 243
              AIRHLVA+AV  L    V+++D TG+LL   +A + +  + G       A +  +  
Sbjct: 180 QIRAIRHLVASAVNGLKPQRVSIVDETGQLLADGSATDAD-GVSGDERRA--AFEKRMRS 236

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIV--YDPDSKVERSIRLSKDAQRSETSQ 301
            +   +++ +G  N R+ V    + D  +I +    +DP+ +V RS +  +++  S T+ 
Sbjct: 237 QVEAIVSSVVG--NGRARVQLSADFDYNKITQTSDKFDPEGRVLRSSQTREES--SLTAD 292

Query: 302 PESAVTVEQNMP--HVSDRKVPLPRSLENTDKK-EEQSNYEINTKSIATTHDNYKLERLS 358
               VTV   +P    SD     P +  +  KK EE +NYEI+  +     +  ++ R+S
Sbjct: 293 NNGQVTVNNELPGNQPSDN----PNTARDQSKKSEETNNYEISRTTKTEVTEAGRVNRIS 348

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           +AV+V+        G+   + +    L  I  +V +A G + +RGD + + ++ F E  +
Sbjct: 349 VAVLVDGAYARNDKGQMVYEERSQEQLDRIATLVRSAIGFDQKRGDQVEVVNLKFAEPPV 408

Query: 419 ---FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL-RRLHNIDDAKKGEV 474
                  T  +  M +       V    V  +  L+VTF+ +  L +R+   + A     
Sbjct: 409 VVPLAEPTGWLGMMTLTKDDVMYVFELGVMALLGLVVTFMVIRPLVQRILAAEPATPSAQ 468

Query: 475 GGKSILSPPPISSAVT-TG--LMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
              ++  P   S+  T TG  L+P  N    ++ Q I        +++   V  QS  R+
Sbjct: 469 PAAALPVPADASAQPTETGQNLIPGSN----ATAQLIDV------AQVQGQVHAQSVHRV 518

Query: 532 LHMIEINEERFAKILRKW 549
             + E N    A I+R+W
Sbjct: 519 GELAERNPAETASIIRQW 536


>gi|187925740|ref|YP_001897382.1| flagellar MS-ring protein [Burkholderia phytofirmans PsJN]
 gi|187716934|gb|ACD18158.1| flagellar M-ring protein FliF [Burkholderia phytofirmans PsJN]
          Length = 603

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 125/395 (31%), Positives = 196/395 (49%), Gaps = 26/395 (6%)

Query: 35  LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKAR 94
           LF+ +R    +P Y  LY  L   D   I  AL  ANI ++ SD G +I VP+  V + R
Sbjct: 81  LFLWSR----APDYKVLYSNLSDRDGGAIITALQAANIPYKFSDAGGAILVPAEQVHEMR 136

Query: 95  IHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARV 154
           + LA+QGLP S S  G+EL D    FG++ F ++I   RALEGE+ RTI+SIS + +ARV
Sbjct: 137 LRLASQGLPKSGS-VGFELMDN-QKFGISQFAEQINYQRALEGELERTIESISSVKSARV 194

Query: 155 HIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDS 212
           H+ +P    F +    P+ASV++           +  AI H+V++AVP++ +  VT+LD 
Sbjct: 195 HLAIPKPSVFVRDKEAPSASVLVNLYPGRALDEGQVLAITHMVSSAVPDMPVKGVTILDQ 254

Query: 213 TGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272
            G LLT       +    L   Q I+   +  I+  LA   G  N  S V A+++    +
Sbjct: 255 DGNLLTQLSTGSGLDASQLKYRQQIERSTQQRIDAILAPLFGSGNAHSQVSADIDFSHSE 314

Query: 273 IREIVYDPDSKVER-SIRLSKDAQRSETS-------------QPESAVTVEQNMPHVSDR 318
                Y P+   ++ +IR  + +  +E S             QP    +   N P+ +  
Sbjct: 315 QTSENYGPNGNPQQAAIRSQQSSSATEMSQGAASGVPGALSNQPPQPASAPINAPNGASG 374

Query: 319 KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ 378
               P S    D+K+  +NYE++            ++RLS+AVVVN  R+ +  G +  Q
Sbjct: 375 VTTTPVS----DRKDSTTNYELDKTVRHLERPMGGIKRLSVAVVVNYLRVVDAKGHATMQ 430

Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
                 LA++N++V  A G +  RGD++ + +  F
Sbjct: 431 PVTADKLAQVNQLVKDAMGFDQARGDSVNVVNSPF 465


>gi|292492381|ref|YP_003527820.1| flagellar M-ring protein FliF [Nitrosococcus halophilus Nc4]
 gi|291580976|gb|ADE15433.1| flagellar M-ring protein FliF [Nitrosococcus halophilus Nc4]
          Length = 566

 Score =  179 bits (455), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 144/548 (26%), Positives = 258/548 (47%), Gaps = 58/548 (10%)

Query: 28  VILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPS 87
           +I V + L +    +  SP+Y  LY  +   +   I  AL +ANID+++ +   ++ VP+
Sbjct: 46  MIAVSVALGVGIFLWSQSPNYQILYGAVSGKEKGEIVEALQKANIDYQLDEATGALMVPA 105

Query: 88  SMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSIS 147
           S V + R+ LA +GLP S+  +G+EL ++   FG++ F+++    R LEGE+ARTI +++
Sbjct: 106 SQVHEVRLQLAMEGLPRSA-GTGFELLEQNPGFGVSEFLEKARYQRVLEGELARTISTLN 164

Query: 148 GIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNL 202
            + +ARVH+ +P    F +    P+ASV++     R + P       AI HLVA+++P L
Sbjct: 165 NVKSARVHLALPKRSVFIRDRKVPSASVVLDLYPGRMLAPG---QVAAITHLVASSIPEL 221

Query: 203 DMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRS 260
           +   VTV++  G LLT  E  + +          + I+ E    I + LA  +G D  R+
Sbjct: 222 ESAGVTVVNQEGDLLTQPERSQTLEMTASQFEYTRRIEEEYGHRIQRILAPLVGADKVRA 281

Query: 261 AVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV 320
            VVAE++    +  +  Y+P+ +  RS + +++ +R     P        N P     + 
Sbjct: 282 QVVAEVDFTVTEQTQERYEPEKRALRSEQTAEE-ERIGGRLPGGIPGALSNQP---PDEA 337

Query: 321 PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE--------------RLSIAVVVNKG 366
            +P +L   ++ E Q +   +++S+  T  NY+L+              RLS+AV+V++ 
Sbjct: 338 QVPETLNGANEGESQPSEPPSSRSLRATR-NYELDRTISHIRLAPGDIRRLSVAVLVDEK 396

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV-- 424
            +T+  G  +   +    L  I  +V  A G N  RGDTI + +  F+ N+         
Sbjct: 397 LVTDAEGNVSTSPRSPQELEHITGLVKEAVGFNPDRGDTINVINAPFVPNEELEPLPEPP 456

Query: 425 --QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482
             Q  +  +  +    ++  L  L+G L  TF      RRL  +               P
Sbjct: 457 FWQQEWFWVAVKQGGGILAVLFLLLGVLRPTF------RRLTTV---------------P 495

Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL-RLLHMIEINEER 541
            P++          D   L      + S++  LQ  ++   S +++L R+  M   + ER
Sbjct: 496 EPVTVPSLPKGSDEDKEGLKEDRLTLSSNAPTLQ--LSGPDSLEANLERVRKMAADDSER 553

Query: 542 FAKILRKW 549
            A++++ W
Sbjct: 554 VAQVVKNW 561


>gi|296157432|ref|ZP_06840267.1| flagellar M-ring protein FliF [Burkholderia sp. Ch1-1]
 gi|295892204|gb|EFG71987.1| flagellar M-ring protein FliF [Burkholderia sp. Ch1-1]
          Length = 600

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 139/480 (28%), Positives = 224/480 (46%), Gaps = 43/480 (8%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  LY  L   D   I  AL  ANI ++ SD G +I VP+  V + R+ LA+Q
Sbjct: 82  LWSRAPDYKVLYSNLSDRDGGAIITALQAANIPYKFSDAGGAILVPAEQVHEMRLRLASQ 141

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP S S  G+EL D    FG++ F ++I   RALEGE+ RT++SIS + +ARVH+ +P 
Sbjct: 142 GLPKSGS-VGFELMDN-QKFGISQFAEQINYQRALEGELERTVESISSVKSARVHLAIPK 199

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV++           +  AI H+V++AVP++ +  VT+LD  G LLT
Sbjct: 200 PSVFVRDKEAPSASVLVNLYPGRALDEGQVLAITHMVSSAVPDMPVKGVTILDQDGNLLT 259

Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
                  +    L   Q I+   +  I+  LA   G  N  S V A+++    +     Y
Sbjct: 260 QPSTGNGLDASQLKYRQQIERSTQQRIDAILAPLFGSGNAHSQVSADIDFSHSEQTSENY 319

Query: 279 DPDSKVER-SIRLSKDAQRSETS-------------QPESAVTVEQNMPHVSDRKVPLPR 324
            P+   ++ +IR  + +  +E S             QP    +   N P  +      P 
Sbjct: 320 GPNGNPQQAAIRSQQSSSATEMSQGAASGVPGALSNQPPQPASAPINAPTGASGVTTTPV 379

Query: 325 SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY 384
           S    D+K+  +NYE++            ++RLS+AVVVN  R+ +  G +  Q      
Sbjct: 380 S----DRKDSTTNYELDKTVRHLERPMGGIKRLSVAVVVNYLRVVDAKGHATMQPVTADK 435

Query: 385 LAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDI--LSRHFATVINA 442
           LA++N++V  A G +  RGD++ + +  F  +   N+        D+  L++  AT +  
Sbjct: 436 LAQVNQLVKDAMGFDQARGDSVNVVNSAFSTDLDPNADLPWWRTPDMIALAKQIATYLG- 494

Query: 443 LVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALD 502
            +  V   L   +   ALRR     +              PP++ A+ +   P++ I LD
Sbjct: 495 -IGAVALFLYFVMVKPALRRAFPPPE--------------PPVAGALPS---PDEPILLD 536


>gi|300114783|ref|YP_003761358.1| flagellar M-ring protein FliF [Nitrosococcus watsonii C-113]
 gi|299540720|gb|ADJ29037.1| flagellar M-ring protein FliF [Nitrosococcus watsonii C-113]
          Length = 567

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 120/417 (28%), Positives = 221/417 (52%), Gaps = 26/417 (6%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           SL +   L+LA  I   + L +    +  +P Y  +Y  +   +   I  AL +ANI++R
Sbjct: 36  SLQKQVGLLLA--IAASVALVVGVVMWALAPTYQVMYGAVTGEEKGEIVAALQKANIEYR 93

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135
           +++N  +I VP+S V + R+ LA +GLP  S+++G+EL ++   FG + F+++    RAL
Sbjct: 94  LAENTGAIMVPASKVHEVRLQLAMEGLP-RSADTGFELLEQNPGFGASEFLEKARYQRAL 152

Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEA 190
           EGE+ARTI +++ +  ARVH+ +P    F +    P+ASV++     RA++P       A
Sbjct: 153 EGELARTIGTLNNVRNARVHLALPKQSVFIRNRQAPSASVVLDLYAGRALDPG---QVAA 209

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS---LSIVQAIQHEIEMNINK 247
           I HLV++++PNL+   VT++D  G LLT  +  ++ LG +       + ++ +    I  
Sbjct: 210 ITHLVSSSIPNLESSGVTLVDQRGNLLTRQDRSQS-LGMTEGQFEYTRRLEEKYIRRIQH 268

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE--------- 298
            LA  +G D  R+ VVAE++    +  +  Y+P+S   RS ++S++ +            
Sbjct: 269 ILAPMIGSDKARAQVVAEVDFTVTEQTQEYYNPESAALRSEQMSEEERTGSRFPQGIPGA 328

Query: 299 -TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
            ++QP +     + +P  +D + P+  ++  T  +    NYE++     +      + RL
Sbjct: 329 LSNQPPAEAQAPEVVPEANDDEAPI-EAVPTTRSQRATRNYELDRTISHSRLSPGSIRRL 387

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           S+AV+V++  + +  G  +   +    LA++  +V  A G N+ RGDTI + +  F+
Sbjct: 388 SVAVLVDEKAVADAEGTVSTVPRSPQELAQVTALVKEAVGFNAERGDTINVINAPFV 444


>gi|154252631|ref|YP_001413455.1| flagellar M-ring protein FliF [Parvibaculum lavamentivorans DS-1]
 gi|154156581|gb|ABS63798.1| flagellar M-ring protein FliF [Parvibaculum lavamentivorans DS-1]
          Length = 552

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 127/407 (31%), Positives = 216/407 (53%), Gaps = 14/407 (3%)

Query: 16  SLGRTRI--LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73
           SLG  R+  L L ++ L     F+A R   N P    L+  + V D  ++   L  A + 
Sbjct: 10  SLGTMRLAALGLVAIALFSFFAFIALRMG-NEPKA-LLFSDVGVEDAAKMIAELDAAKVS 67

Query: 74  FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
           + +  NG  I VP + V + R+ LA +GLP+  +  GYE+FD  ++ G TSF+Q I  +R
Sbjct: 68  YELRGNGGMIYVPQADVLRLRMMLAGKGLPAGGT-VGYEIFDNADALGTTSFLQNINHLR 126

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-AINPSVYKSAEAIR 192
           ALEGE+ARTI++I GI  ARVH+V+P+   F +    PTAS++++ + N    +  +AI+
Sbjct: 127 ALEGELARTIRAIEGIGGARVHLVLPERELFSRDRREPTASIVLKVSRNSLTTQQVKAIQ 186

Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQ-AIQHEIEMNINKAL 249
           +LVA+AV  L  G V+++D  G LL +   E  +++L  S+   +   ++ +  ++   L
Sbjct: 187 YLVASAVDGLSPGRVSIVDERGALLASGVGEDTQSLLVTSVDERRTGYENRLRTHLENIL 246

Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREI--VYDPDSKVERSIRLSKDAQRSETSQPESAVT 307
              +G D  R  V A+  MD  +I +    +DP+ +V RS +   D   S        VT
Sbjct: 247 QRVVGADKARVEVTAQ--MDYNRITQTSDTFDPNGQVVRSTQTVDDNSTSADGAQNDGVT 304

Query: 308 VEQNMPHVSDRKVPLPR-SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
           V  N+P+ +         S + +++ EE  NYEI+  +     +  +++RLS+AV+V+  
Sbjct: 305 VGNNLPNANLGGAEAETGSRQASNRTEETVNYEISRTTKTEVLEPGRVKRLSVAVLVDGS 364

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
              +  G +    + +  L +I  +V +A G ++ RGD + I ++ F
Sbjct: 365 YAADAEGNTVYTPRTEQELGKIEALVKSAIGFDTSRGDQVEIVNLQF 411


>gi|254502238|ref|ZP_05114389.1| flagellar M-ring protein FliF [Labrenzia alexandrii DFL-11]
 gi|222438309|gb|EEE44988.1| flagellar M-ring protein FliF [Labrenzia alexandrii DFL-11]
          Length = 538

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 125/416 (30%), Positives = 219/416 (52%), Gaps = 15/416 (3%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++ L++F K+   LG  RI  + +V  + + +F    F V +P    LY +L + D   I
Sbjct: 1   MNGLIEFIKT---LGPARIAAMGAVAAILVGVFAFIIFRVTAPQMTTLYNELTLEDSAAI 57

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    + F+++  G+SI VP   V + R+ LAA+GLP+  S  GYE+FD+ ++ G T
Sbjct: 58  VSQLESQGVQFKLAREGASIMVPQEQVARLRMQLAAEGLPTGGS-IGYEIFDRSDTLGAT 116

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AI 180
           SF+Q I  +RA+EGE++RTI S+  I +ARVH+V+P+   F++    P+AS+++     +
Sbjct: 117 SFVQNINHLRAMEGELSRTISSLDRIRSARVHLVIPERQLFQRDRRPPSASIVLNVRGGL 176

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQAI 237
            P   +   A++HLVA AV  LD   V+++D +G+LL    +++ E  +  +      AI
Sbjct: 177 GPGEIR---AVQHLVATAVDGLDPDKVSIVDESGRLLASGASSDDEGMVSARLQERSTAI 233

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           +  +   + + L + +G    R  V A+++ +        +DP+ +V RS + SK+   S
Sbjct: 234 ESRLRNQVEEILNSVVGPGRARVRVNADIDFNRLTETTETFDPEGQVVRSTQ-SKEEATS 292

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
            T Q +  VTV   +P+    +       + +   EE  NYEI+  +     +  ++ RL
Sbjct: 293 STRQ-DGQVTVGNELPNADANQNNDAEEQDTSSLTEEIVNYEISRSTRTEVVEAGRITRL 351

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           S+AV+V+    T+  G S    +    L  I  +V +A G +  RGD + + ++ F
Sbjct: 352 SVAVLVDGTYQTDEDGNSIYTPRAQEALDRIAVLVRSAVGFDEARGDVVEVINLQF 407


>gi|78067882|ref|YP_370651.1| flagellar MS-ring protein [Burkholderia sp. 383]
 gi|77968627|gb|ABB10007.1| Flagellar FliF M-ring protein [Burkholderia sp. 383]
          Length = 587

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 122/413 (29%), Positives = 204/413 (49%), Gaps = 25/413 (6%)

Query: 18  GRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS 77
           G  ++  L +V    + +  A   +  +P Y  LY  L   D   I  AL +AN+ ++ +
Sbjct: 57  GNPKLPFLIAVAFA-VAVITALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFA 115

Query: 78  DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137
           D G +I VPS+ V + R+ LAA GLP   S  G+EL D    FG++ F ++I   RALEG
Sbjct: 116 DAGGAILVPSNQVHETRLKLAAMGLPKGGS-VGFELMDN-QKFGISQFAEQINYQRALEG 173

Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLV 195
           E+ RTI+SI+ +  ARVH+ +P    F +    P+ASV +      V    +  AI  +V
Sbjct: 174 ELQRTIESINAVRGARVHLAIPKPSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMV 233

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255
           ++ VP++   +VT++D  G LLT       +    L  VQ ++H  +  I+  LA   G 
Sbjct: 234 SSGVPDMPAKNVTIVDQDGNLLTQTASASGLDASQLKYVQQVEHNTQKRIDAILAPIFGT 293

Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERS-IRLSKDAQRSETSQ------------- 301
            N RS V A+L+    +     Y P+   ++S IR  + +  +E +Q             
Sbjct: 294 GNARSQVSADLDFSKIEQTSESYGPNGNPQQSAIRSQQTSSATELAQGGASGVPGALSNT 353

Query: 302 -PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
            P+ A     + P V+      P++   +D+K++ +NYE++            ++RLS+A
Sbjct: 354 PPQPA-----SAPIVAGNGQNAPQTTPVSDRKDQTTNYEVDKTIRHLEQPMGSVKRLSVA 408

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           VVVN   + +  G    Q    + LA++ ++V  A G + +RGD++ + +  F
Sbjct: 409 VVVNYQPVADAKGHVTMQPLPPAKLAQVEQLVKDAMGYDEKRGDSVNVVNSAF 461


>gi|209522223|ref|ZP_03270859.1| flagellar M-ring protein FliF [Burkholderia sp. H160]
 gi|209497337|gb|EDZ97556.1| flagellar M-ring protein FliF [Burkholderia sp. H160]
          Length = 555

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 139/461 (30%), Positives = 224/461 (48%), Gaps = 34/461 (7%)

Query: 23  LILASVILVPIM--LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80
           L+ A  +LV ++  LF+ +R    +P Y  LY  L   D   I  AL +ANI +++SD+G
Sbjct: 26  LVFAIALLVAVVAGLFLWSR----TPDYKVLYSNLSDRDGGSIIAALQQANIPYKLSDSG 81

Query: 81  SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140
            +I VP+  V + R+ LA+QGLP S S  G+EL D    FG++ F ++I   R+LEGE+ 
Sbjct: 82  GAILVPAEQVHEMRLRLASQGLPKSGS-VGFELMDN-QKFGISQFNEQINYQRSLEGELE 139

Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAA 198
           RTI+SIS + +ARVH+ +P    F +    P+A+V++      V    +  AI H+V++A
Sbjct: 140 RTIESISSVKSARVHLAIPKPSVFVRDKEAPSAAVLVNLYPGRVLDEGQVVAITHMVSSA 199

Query: 199 VPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNF 258
           VP + +  VT+LD  G LLT       +    L   Q I+   +  I+  LA   G  N 
Sbjct: 200 VPEMPVRGVTILDQDGNLLTQPSNGSGLDATQLKFRQQIERNTQQRIDAILAPLFGPGNA 259

Query: 259 RSAVVAELNMDTQQIREIVYDPD-SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSD 317
           RS V A+++    +     Y P+ S  + +IR  + +  +E SQ  ++      +P    
Sbjct: 260 RSQVSADIDFSHSEQTSENYGPNGSPQQAAIRSQQSSSATEMSQGGAS-----GVPGALS 314

Query: 318 RKVPLPRS--------------LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
            + P P S                 +D K+  +NYE++            + RLS+AVVV
Sbjct: 315 NQPPQPASAPIVAANGASSVATTPISDHKDSTTNYELDKTVRHVDQPMGGIHRLSVAVVV 374

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           N  R+ +  G    Q      L +I ++V  A G ++ RGD++ + +  F  +   N+  
Sbjct: 375 NYLRVVDAKGHVTMQPVSADKLMQITQLVKDAMGFDASRGDSVNVVNSAFTTDLDPNADL 434

Query: 424 VQVSFMDILS--RHFATVINALVFLVGTLLVTFLGLHALRR 462
                 D+L+  +  AT +   +  V   L   +   ALRR
Sbjct: 435 PWWRTPDMLALYKQIATYLG--IGAVALFLYFVMVKPALRR 473


>gi|302383920|ref|YP_003819743.1| flagellar M-ring protein FliF [Brevundimonas subvibrioides ATCC
           15264]
 gi|302194548|gb|ADL02120.1| flagellar M-ring protein FliF [Brevundimonas subvibrioides ATCC
           15264]
          Length = 542

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 121/380 (31%), Positives = 201/380 (52%), Gaps = 15/380 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110
           LY  L++ +   I+ +L ++ I +    +GS+I V    VG+AR+ LA +GL +S S  G
Sbjct: 45  LYSNLDLREAGEITASLEQSGIPYSTRGDGSTIMVNRDQVGEARLMLAGKGLVTSGS-VG 103

Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170
           YELFD  +  G T F Q+I+  RAL+GE+ARTI S+ G+ +ARV I +P    F++  A 
Sbjct: 104 YELFDTQSVLGQTEFQQQISEQRALQGELARTIMSMRGVQSARVAIALPKRELFQQDAAE 163

Query: 171 PTASVMI----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI 226
           PTASV++    R ++    +   AIR ++A++VPNL    VTV+D T + L A + E   
Sbjct: 164 PTASVVVGLGGRKLSSDQVR---AIRAVIASSVPNLKPNKVTVVDETNQTLAAADDEAGF 220

Query: 227 LGKSLSIVQ-AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVE 285
              +    + A + +++  I   +   +G    R  V A+++M     +E  YDPD +V 
Sbjct: 221 SSATAEEAKGATEAQLQQRIKDLVEGVVGPGAARVQVTADIDMTRSTTQEQKYDPDGQVV 280

Query: 286 RSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSI 345
           RS   +    +  T   +   T   N+P  +        S E+ +   E +NYEI+  + 
Sbjct: 281 RSTSTNGTQSQDTTGVADGGATATNNIPGGAAPATTPAGSTESANT--ETTNYEISNTTT 338

Query: 346 ATTHDNYKLERLSIAVVVNKGRLT---EVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402
            T  +  ++++LS+AV V+ G+LT   E  G +    +    + +I  +V AA G N  R
Sbjct: 339 TTVKEPGEVKKLSVAVAVD-GKLTPAAEPGGEATYAPRTAEEITQIEDLVKAAMGFNEER 397

Query: 403 GDTITITSMDFLENQLFNSG 422
           GD + +T++ F  + L ++G
Sbjct: 398 GDQVRVTNVRFNRDALVSAG 417


>gi|296531738|ref|ZP_06894564.1| flagellar M-ring protein FliF [Roseomonas cervicalis ATCC 49957]
 gi|296267937|gb|EFH13738.1| flagellar M-ring protein FliF [Roseomonas cervicalis ATCC 49957]
          Length = 472

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 130/375 (34%), Positives = 201/375 (53%), Gaps = 13/375 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110
           LY  LE ++  RIS  L E  I      +G+ I VP   V + R+ LAA+GLP     +G
Sbjct: 56  LYAGLEPAEAGRISARLEELKIPVEARGDGT-ILVPMDQVARLRMQLAAEGLPRQG-GAG 113

Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170
           YEL D+ +   +TSFMQ + R+RALEGE+ARTI ++ G+ AARVHIV+P+  SF +    
Sbjct: 114 YELLDQTSPMQMTSFMQRVQRLRALEGELARTIVTMQGVRAARVHIVLPERESFSRDAPP 173

Query: 171 PTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG 228
           PTASV +         +A+  AIR LVA AVP L   DV+V+D  G +L A+       G
Sbjct: 174 PTASVTVTTSAGQRLGAAQAAAIRLLVAGAVPRLRQEDVSVMDGNGVVLAADGGMGAAAG 233

Query: 229 KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288
           +   I  A +H ++  +   L   +G    R+    E+       R   +DP  +VER  
Sbjct: 234 RLGEIRVAQEHALQKAVLDLLEPLVGRGKVRAVASVEVEGARTVARAETFDPLGQVERGR 293

Query: 289 RLSKDAQRSETSQPESAVTVEQNMP--HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346
           +L  + + SE  + ++ VTV QN+P   V+       RS+    +  E  N+EI++K   
Sbjct: 294 QLQTEQENSEDGRGQAPVTVGQNLPNQQVNQNAT---RSVSAVQRNNETVNFEISSKVEE 350

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
           T  +   ++R+S+AVVV+   +T+  G    Q +  + L  +  +V +A G N +RGDT+
Sbjct: 351 TVREPGAVKRVSVAVVVDG--ITDAEGNV--QPRPPAELERLAALVRSAVGYNQQRGDTV 406

Query: 407 TITSMDFLENQLFNS 421
           T+ ++ FL ++   +
Sbjct: 407 TVDTLRFLPDEGLGT 421


>gi|328542763|ref|YP_004302872.1| flagellar M-ring protein [polymorphum gilvum SL003B-26A1]
 gi|326412509|gb|ADZ69572.1| Flagellar M-ring protein [Polymorphum gilvum SL003B-26A1]
          Length = 538

 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 128/417 (30%), Positives = 221/417 (52%), Gaps = 18/417 (4%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++ L++F ++   LG TR+  + +V  + I +F    F V +P    LY  L + D + I
Sbjct: 1   MNGLVEFIRT---LGPTRVAAMGAVAAILIGVFAFIIFRVTAPQMTQLYSDLTLEDSSAI 57

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    I F +  +G++I +P   V + R+ LA +GLP+  S  GYE+FD+ ++ G T
Sbjct: 58  VNQLESLGIPFELKRDGATIMIPKEQVARVRMRLAEEGLPTGGS-IGYEIFDRSDTLGAT 116

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
           SF+Q I  +RA+EGE+ARTI+S+  IV+ARVH+V+P+   F++    P+AS+ I+     
Sbjct: 117 SFVQNINHLRAMEGELARTIRSLDRIVSARVHLVIPERQLFQRDRRPPSASIAIKTRGSL 176

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSL-----SIVQA 236
                 AI+HLVAAAV  L    V+++D TG+LL   ++E    I+  SL      I Q 
Sbjct: 177 GQNEIRAIQHLVAAAVDGLGPERVSIVDDTGRLLATGSDESAEGIVASSLQERTFEIEQR 236

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           ++++IE  +N    + +G    R  V AE++ +        +DP+ +V RS +  +++  
Sbjct: 237 LKNQIEEILN----SVVGPGRARVRVAAEVDFNRITETSEKFDPEGQVVRSTQSKEESST 292

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
           S + Q  + VTV   +P+ ++         E ++  EE  N+EI+        +  +++R
Sbjct: 293 SISRQ--AGVTVGNQIPN-AEADAGEGGDREGSNLAEEIVNFEISKSVRTEVVEAGRIKR 349

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           LS+AV+V+        G      +    L  I  +V +A G ++ RGD + + ++ F
Sbjct: 350 LSVAVLVDGVYSPNESGEVQYAPRTQEVLDRIAVLVRSAVGFDAARGDVVEVVNLRF 406


>gi|85713555|ref|ZP_01044545.1| flagellar M-ring protein [Nitrobacter sp. Nb-311A]
 gi|85699459|gb|EAQ37326.1| flagellar M-ring protein [Nitrobacter sp. Nb-311A]
          Length = 541

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 131/422 (31%), Positives = 210/422 (49%), Gaps = 33/422 (7%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           LL F K    LG +R++ + +V  V I  F      V +P    L+  L V D + I   
Sbjct: 4   LLAFLKG---LGASRLMAMVAVTTVLIAFFAFVIMRVTTPQMTTLFTDLSVEDSSGIIKD 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L    I F + ++G+ I VP   V + R+ LA  GLP      GYE+FDK ++ G TSF+
Sbjct: 61  LERQAIPFELRNDGAVIMVPKDKVTRLRMKLAEAGLPKGG-GVGYEIFDKSDALGTTSFV 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
           Q I R+RALEGE+ARTI++I  I  ARVH+V+P+   F +   +P+AS+++R       +
Sbjct: 120 QNINRLRALEGELARTIRAIDRIQDARVHLVLPERPLFTREAPQPSASIVVRVRGGLEPQ 179

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-----------TANEMERNILGKSLSIVQ 235
              AIRHLVA+AV  L    V+++D TG+LL           T +E       +  S V+
Sbjct: 180 QIRAIRHLVASAVNGLKPQRVSIVDETGQLLADGSTTDADGVTGDERRTAFEKRMRSQVE 239

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI--VYDPDSKVERSIRLSKD 293
           AI   +             V N R+ V    + D  +I +    +DP+ +V RS +  ++
Sbjct: 240 AIVSSV-------------VGNGRARVQLSADFDYNKITQTSDTFDPEGRVLRSSQTREE 286

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
           +  S T+     VTV   +P       P  ++ + + K EE +NYEI+  +     +  +
Sbjct: 287 S--SLTADNNGQVTVNNELPGNQPSDNP-NQARDQSKKSEETNNYEISRTTKTEVSEAGR 343

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           + R+S+AV+V+     +  G+     +    L  I  +V +A G + +RGD + + ++ F
Sbjct: 344 VNRISVAVLVDGTYAKDDKGQMVYTERSKEQLDRIATLVRSAIGFDQKRGDQVEVVNLRF 403

Query: 414 LE 415
            E
Sbjct: 404 AE 405


>gi|206558926|ref|YP_002229686.1| flagellar MS-ring protein [Burkholderia cenocepacia J2315]
 gi|198034963|emb|CAR50835.1| flagellar M-ring protein FliF [Burkholderia cenocepacia J2315]
          Length = 587

 Score =  177 bits (449), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 118/390 (30%), Positives = 196/390 (50%), Gaps = 24/390 (6%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VPS+ V + R+ LAA 
Sbjct: 78  LWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSNQVHETRLKLAAM 137

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   S  G+EL D    FG++ F ++I   RALEGE+ RTI+SI+ +  ARVH+ +P 
Sbjct: 138 GLPKGGS-VGFELMDN-QKFGISQFAEQINYQRALEGELQRTIESINAVRGARVHLAIPK 195

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +      V      +AI  +V++ VP++   +VT++D  G LLT
Sbjct: 196 PSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGNLLT 255

Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
                  +    L  VQ ++H  +  I+  LA   G  N RS V A+L+    +     Y
Sbjct: 256 QTASASGLDASQLKYVQQVEHNTQKRIDAILAPIFGAGNARSQVSADLDFSKIEQTSESY 315

Query: 279 DPDSKVER-SIRLSKDAQRSETSQ--------------PESAVTVEQNMPHVSDRKVPLP 323
            P+   ++ +IR  + +  +E +Q              P+ A     + P V+      P
Sbjct: 316 GPNGTPQQAAIRSQQTSSATELAQGGASGVPGALSNTPPQPA-----SAPIVAGNGQNAP 370

Query: 324 RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS 383
           ++   +D+K++ +NYE++     T      ++RLS+AVVVN   + +  G    Q    +
Sbjct: 371 QTTPVSDRKDQTTNYELDKTIRHTEQPMGSVKRLSVAVVVNYQPVADAKGHVTMQPLPPA 430

Query: 384 YLAEINKIVSAATGINSRRGDTITITSMDF 413
            LA++ ++V  A G + +RGD++ + +  F
Sbjct: 431 KLAQVEQLVKDAMGYDEKRGDSVNVVNSAF 460


>gi|107023995|ref|YP_622322.1| flagellar MS-ring protein [Burkholderia cenocepacia AU 1054]
 gi|116691082|ref|YP_836705.1| flagellar MS-ring protein [Burkholderia cenocepacia HI2424]
 gi|170734416|ref|YP_001766363.1| flagellar MS-ring protein [Burkholderia cenocepacia MC0-3]
 gi|105894184|gb|ABF77349.1| flagellar M-ring protein FliF [Burkholderia cenocepacia AU 1054]
 gi|116649171|gb|ABK09812.1| flagellar M-ring protein FliF [Burkholderia cenocepacia HI2424]
 gi|169817658|gb|ACA92241.1| flagellar M-ring protein FliF [Burkholderia cenocepacia MC0-3]
          Length = 587

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 118/390 (30%), Positives = 196/390 (50%), Gaps = 24/390 (6%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VPS  V + R+ LAA 
Sbjct: 78  LWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSGQVHETRLKLAAM 137

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   S  G+EL D    FG++ F ++I   RALEGE+ RTI+SI+ +  ARVH+ +P 
Sbjct: 138 GLPKGGS-VGFELMDN-QKFGISQFAEQINYQRALEGELQRTIESINAVRGARVHLAIPK 195

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +      V      +AI  +V++ VP++   +VT++D  G LLT
Sbjct: 196 PSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGNLLT 255

Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
                  +    L  VQ ++H  +  I+  LA   G  N RS V A+L+    +     Y
Sbjct: 256 QTASASGLDASQLKYVQQVEHNTQKRIDAILAPIFGAGNARSQVSADLDFSKIEQTSESY 315

Query: 279 DPDSKVER-SIRLSKDAQRSETSQ--------------PESAVTVEQNMPHVSDRKVPLP 323
            P+   ++ +IR  + +  +E +Q              P+ A     + P V+      P
Sbjct: 316 GPNGTPQQAAIRSQQTSSATELAQGGASGVPGALSNTPPQPA-----SAPIVAGNGQNGP 370

Query: 324 RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS 383
           ++   +D+K++ +NYE++     T      ++RLS+AVVVN   + +  G    Q    +
Sbjct: 371 QTTPVSDRKDQTTNYELDKTIRHTEQPMGSVKRLSVAVVVNYQPVADAKGHVTMQPLPPA 430

Query: 384 YLAEINKIVSAATGINSRRGDTITITSMDF 413
            LA++ ++V  A G +++RGD++ + +  F
Sbjct: 431 KLAQVEQLVKDAMGYDAKRGDSVNVVNSAF 460


>gi|254246925|ref|ZP_04940246.1| Flagellar biosynthesis/type III secretory pathway lipoprotein
           [Burkholderia cenocepacia PC184]
 gi|124871701|gb|EAY63417.1| Flagellar biosynthesis/type III secretory pathway lipoprotein
           [Burkholderia cenocepacia PC184]
          Length = 587

 Score =  176 bits (447), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 118/390 (30%), Positives = 195/390 (50%), Gaps = 24/390 (6%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VPS  V + R+ LAA 
Sbjct: 78  LWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSGQVHETRLKLAAM 137

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   S  G+EL D    FG++ F ++I   RALEGE+ RTI+SI+ +  ARVH+ +P 
Sbjct: 138 GLPKGGS-VGFELMDN-QKFGISQFAEQINYQRALEGELQRTIESINAVRGARVHLAIPK 195

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +      V      +AI  +V++ VP++   +VT++D  G LLT
Sbjct: 196 PSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGNLLT 255

Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
                  +    L  VQ ++H  +  I+  LA   G  N RS V A+L+    +     Y
Sbjct: 256 QTASASGLDASQLKYVQQVEHNTQKRIDAILAPIFGAGNARSQVSADLDFSKIEQTSESY 315

Query: 279 DPDSKVER-SIRLSKDAQRSETSQ--------------PESAVTVEQNMPHVSDRKVPLP 323
            P+   ++ +IR  + +  +E +Q              P+ A     + P V+      P
Sbjct: 316 GPNGTPQQAAIRSQQTSSATELAQGGASGVPGALSNTPPQPA-----SAPIVAGNGQNGP 370

Query: 324 RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS 383
           ++   +D+K++ +NYE++     T      ++RLS+AVVVN   + +  G    Q    +
Sbjct: 371 QTTPVSDRKDQTTNYELDKTIRHTEQPMGSVKRLSVAVVVNYQPVADAKGHVTMQPLPPA 430

Query: 384 YLAEINKIVSAATGINSRRGDTITITSMDF 413
            LA++ ++V  A G + +RGD++ + +  F
Sbjct: 431 KLAQVEQLVKDAMGYDEKRGDSVNVVNSAF 460


>gi|332702978|ref|ZP_08423066.1| flagellar M-ring protein FliF [Desulfovibrio africanus str. Walvis
           Bay]
 gi|332553127|gb|EGJ50171.1| flagellar M-ring protein FliF [Desulfovibrio africanus str. Walvis
           Bay]
          Length = 533

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 133/451 (29%), Positives = 226/451 (50%), Gaps = 27/451 (5%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L++L  F+   +   R  I  LA+ ++V  +L +    ++N P Y  LY  L   D  R+
Sbjct: 9   LNKLTAFWSDRSMAQRVMIGGLAASLVVIFLLLIV---WLNQPDYKILYSNLPPEDAGRV 65

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  L +  ID+++ D+G ++ VPS  V + R+ +A +GL    +  G+ELFD+V   G T
Sbjct: 66  AEQLKKQKIDYKLEDSGKTVLVPSDQVYQLRLDMAGEGL-LHGTGLGFELFDEVK-IGQT 123

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----R 178
            F+Q I   RAL+GE++RTI     +  ARVHIVMP    F +  + PTAS+++     R
Sbjct: 124 DFVQRINYQRALQGELSRTITEFPEVERARVHIVMPHKSLFIEEQSPPTASIILKLAEGR 183

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ--- 235
            +N    K  EAI +LV+ +V  LD   +TV D  GKLL   + + ++ G +L  ++   
Sbjct: 184 ELN---QKQIEAIVNLVSLSVEGLDKSQITVADVAGKLLFQADSDDSVKGLTLGQLEYRT 240

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            +Q  +E  I + L   +GV    + V A+++   + I + +YDP S V RS       Q
Sbjct: 241 TLQRNLEQRIEQLLTPVVGVGKVIARVNADVDFSQKTITKDIYDPSSAVVRS------EQ 294

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEE--QSNYEINTKSIATTHDNYK 353
           R+E  Q +    +E   P  + R      SL + D   E   +N+EIN +  +      +
Sbjct: 295 RTE-EQTKGRANIEGGEPDPNFRGDGFNGSLSSQDSNRETRTTNFEINKEQQSIVVPVGE 353

Query: 354 LERLSIAVVVNKGRL--TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
           ++RLS+AV+V+       E  G      +    +  I ++V    G +  RGD I ++++
Sbjct: 354 IDRLSVAVIVDGTWQAPAEGEGEPVWVPRSQEEIQRITELVRNTVGFSQSRGDAIEVSNI 413

Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINA 442
            F E  +F   ++  + ++ + R    ++N 
Sbjct: 414 SFGEPDMFGEPSLMQTMLEYMQRLGKPILNG 444


>gi|148260475|ref|YP_001234602.1| flagellar M-ring protein FliF [Acidiphilium cryptum JF-5]
 gi|146402156|gb|ABQ30683.1| flagellar M-ring protein FliF [Acidiphilium cryptum JF-5]
          Length = 520

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 121/415 (29%), Positives = 215/415 (51%), Gaps = 9/415 (2%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-NLYVKLEVSDVNRISVAL 67
           Q   +  +LG  ++  + +V  V ++  MAA      P     LY  L + D + I+  L
Sbjct: 3   QLIANLRALGPVKLGAMGAVA-VAVLGLMAALVLTGGPSPSATLYSGLGLKDASHITETL 61

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
             A+I + I + G S+ V  + + +AR+ LA   LP+ SSN G+ +FD  N    +SF+ 
Sbjct: 62  KAAHIRYAIGNGGHSVLVTPAQLDEARLLLAQHNLPAGSSN-GFAIFDHKNPLLGSSFLN 120

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--AINPSVY 185
            I   RAL+ E+ RTI  I G+ A+RV +V+P    F    A   ASVM+    + P  +
Sbjct: 121 RIDETRALDSELERTINLIHGVEASRVQVVLPRRDEFSLNTAPAQASVMLSLAGVGPLDH 180

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILG-KSLSIVQAIQHEIEM 243
           +S EAI +LVA+AVP L   +++++D+ G LL  A   + ++L  +  ++ Q+ + ++  
Sbjct: 181 ESVEAILNLVASAVPGLKPNNISIVDNRGDLLAQAGRTDNSLLSSRDAALKQSTERQLSE 240

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            +   LAA +G +  R      ++ D  +     Y+P+ +V RS + ++ ++ S +S   
Sbjct: 241 AVRSMLAAVVGPNQVRVVTAVSMDFDRSEQTSTTYNPNGQVVRSQQQTR-SKSSRSSGTN 299

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
             V+V  N+P  +  K   P+ L+   K  + +NYEI+       H   ++ R+S+AV++
Sbjct: 300 KTVSVSNNLPGATSSKAG-PKRLDTQSKSTQTTNYEISQDVKHIVHATPQITRISVAVML 358

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           +  + T   G+     +  + +A+I K+V  A G +  RGD + + S+ F  N+L
Sbjct: 359 DDVKTTNPKGKVIWTPRSPAQVAQIRKLVETAIGYDKSRGDVVDVQSLQFAPNEL 413


>gi|326403668|ref|YP_004283750.1| flagellar M-ring protein FliF [Acidiphilium multivorum AIU301]
 gi|325050530|dbj|BAJ80868.1| flagellar M-ring protein FliF [Acidiphilium multivorum AIU301]
          Length = 520

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 121/415 (29%), Positives = 215/415 (51%), Gaps = 9/415 (2%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-NLYVKLEVSDVNRISVAL 67
           Q   +  +LG  ++  + +V  V ++  MAA      P     LY  L + D + I+  L
Sbjct: 3   QLIANLRALGPVKLGAMGAVA-VAVLGLMAALVLTGGPSPSATLYSGLGLKDASHITETL 61

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
             A+I + I + G S+ V  + + +AR+ LA   LP+ SSN G+ +FD  N    +SF+ 
Sbjct: 62  KAAHIRYAIGNGGHSVLVTPAQLDEARLLLAQHNLPAGSSN-GFAIFDHKNPLLGSSFLN 120

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--AINPSVY 185
            I   RAL+ E+ RTI  I G+ A+RV +V+P    F    A   ASVM+    + P  +
Sbjct: 121 RIDETRALDSELERTINLIHGVEASRVQVVLPRRDEFSLSTAPAQASVMLSLAGVGPLDH 180

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILG-KSLSIVQAIQHEIEM 243
           +S EAI +LVA+AVP L   +++++D+ G LL  A   + ++L  +  ++ Q+ + ++  
Sbjct: 181 ESVEAILNLVASAVPGLKPNNISIVDNRGDLLAQAGRTDNSLLSSRDAALKQSTERQLSE 240

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            +   LAA +G +  R      ++ D  +     Y+P+ +V RS + ++ ++ S +S   
Sbjct: 241 AVRSMLAAVVGPNQVRVVTAVSMDFDRSEQTSTTYNPNGQVVRSQQQTR-SKSSRSSGTN 299

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
             V+V  N+P  +  K   P+ L+   K  + +NYEI+       H   ++ R+S+AV++
Sbjct: 300 KTVSVSNNLPGATSSKAG-PKRLDTQSKSTQTTNYEISQDVKHIVHATPQITRISVAVML 358

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           +  + T   G+     +  + +A+I K+V  A G +  RGD + + S+ F  N+L
Sbjct: 359 DDVKTTNPKGKVIWTPRSPAQVAQIRKLVETAIGYDKSRGDVVDVQSLQFAPNEL 413


>gi|220925883|ref|YP_002501185.1| flagellar MS-ring protein [Methylobacterium nodulans ORS 2060]
 gi|219950490|gb|ACL60882.1| flagellar M-ring protein FliF [Methylobacterium nodulans ORS 2060]
          Length = 541

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 120/419 (28%), Positives = 213/419 (50%), Gaps = 17/419 (4%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +LD + +F       G  R+  + +V L  +  F      V+ P    LY  L + D + 
Sbjct: 4   VLDLVAKF-------GPARLAAMGAVTLTLVGFFAFVILRVSRPEMGVLYADLSMQDASA 56

Query: 63  ISVALSEANIDFRI-SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           +   L    + +    + G +I  P + + + R+ LA +GLPS+    GYE+FDK ++F 
Sbjct: 57  VIRDLDARGLRYETRGEMGQTILAPRADLARLRMDLAGKGLPSAG-GVGYEIFDKGDAFS 115

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
            T+F+Q +  +RALEGE+AR+I++I  + AAR+H+V+P+   F +    P+A+++++   
Sbjct: 116 STTFVQNVNHLRALEGELARSIRAIGRVQAARIHLVIPEKRLFARDREPPSAAIVLKLSG 175

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK-SLSIVQA-IQH 239
                   A+RHLVA++V  L    ++++D  G+LL       +  G+  L   QA ++H
Sbjct: 176 DLDPGQVRAVRHLVASSVEGLKPDRISIVDERGRLLADGAKPEDAQGRLGLDERQANLEH 235

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
            +   +   +A  +G    R  V AEL+ +  + R   +DP+S+V RS +   + Q+S+ 
Sbjct: 236 RLRAQVEGIVAGIVGSGRARVQVAAELDANRIESRSETFDPESRVVRSTQTRSETQQSQG 295

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPR--SLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
              E+ V+V   +P   D   P  +  + E ++K EE +NYEI+  +    ++  ++ RL
Sbjct: 296 PG-ETGVSVGNELPGARD---PAQQNGTREASNKNEETTNYEISRVTRTEINEGGRIRRL 351

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           S+AVV++        GR     +    L  I  +V  A G +  RGD I + ++ F E 
Sbjct: 352 SVAVVIDGTYTPGPDGRPVYAPRPQDELDRITALVRTAVGYDKARGDQIEVVNLRFAEG 410


>gi|167579440|ref|ZP_02372314.1| flagellar MS-ring protein [Burkholderia thailandensis TXDOH]
          Length = 518

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 118/391 (30%), Positives = 193/391 (49%), Gaps = 27/391 (6%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 78  WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 137

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++S++ + AARVH+ +P  
Sbjct: 138 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESVNAVRAARVHLAIPKP 195

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++      V    +  AI  LV+++VP++   +VT++D  G LLT 
Sbjct: 196 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAITRLVSSSVPDMPAKNVTIVDQDGNLLTQ 255

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 256 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYA 315

Query: 280 PDSKVERS-IRLSKDAQRSE----------------TSQPESAVTVEQNMPHVSDRKVPL 322
           P+   ++S IR  + +  +E                  QP SA  V  N    +    P+
Sbjct: 316 PNGTPQQSAIRSQQTSTSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAAPAATPV 375

Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382
                 +D+K+  +NYE++            ++RLS+AVVVN    T+  GR   Q    
Sbjct: 376 ------SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLTA 429

Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413
             LA++ ++V  A G + +RGD++ + +  F
Sbjct: 430 DKLAQVQQLVKDAMGYDEKRGDSVNVVNSAF 460


>gi|167617536|ref|ZP_02386167.1| flagellar MS-ring protein [Burkholderia thailandensis Bt4]
          Length = 594

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 118/391 (30%), Positives = 193/391 (49%), Gaps = 27/391 (6%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 78  WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 137

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++S++ + AARVH+ +P  
Sbjct: 138 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESVNAVRAARVHLAIPKP 195

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++      V    +  AI  LV+++VP++   +VT++D  G LLT 
Sbjct: 196 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAITRLVSSSVPDMPAKNVTIVDQDGNLLTQ 255

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 256 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYA 315

Query: 280 PDSKVERS-IRLSKDAQRSE----------------TSQPESAVTVEQNMPHVSDRKVPL 322
           P+   ++S IR  + +  +E                  QP SA  V  N    +    P+
Sbjct: 316 PNGTPQQSAIRSQQTSTSTELAQSGTSGVPGALSNTPPQPASAPIVASNGQPAAPAATPV 375

Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382
                 +D+K+  +NYE++            ++RLS+AVVVN    T+  GR   Q    
Sbjct: 376 ------SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLTA 429

Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413
             LA++ ++V  A G + +RGD++ + +  F
Sbjct: 430 DKLAQVQQLVKDAMGYDEKRGDSVNVVNSAF 460


>gi|186477678|ref|YP_001859148.1| flagellar MS-ring protein [Burkholderia phymatum STM815]
 gi|184194137|gb|ACC72102.1| flagellar M-ring protein FliF [Burkholderia phymatum STM815]
          Length = 593

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 121/394 (30%), Positives = 199/394 (50%), Gaps = 26/394 (6%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  LY  +   D   I  AL +AN+ ++ S+ G +I +P+  V + R+ LA+Q
Sbjct: 81  LWSRAPDYKVLYSNVSDQDGGAIVAALQQANVPYKFSEAGGAILIPADQVHEMRLRLASQ 140

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP S S  G+EL D    FG++ F ++I   RALEGE+ RTI+SIS +  ARVH+ +P 
Sbjct: 141 GLPKSGS-VGFELMDN-QKFGISQFAEQINYQRALEGELQRTIESISTVKTARVHLAIPK 198

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV++      +    +  AI H+VA+AVP++ +  VT++D  G LLT
Sbjct: 199 PTVFVRDREAPSASVLVNLYPGRMLDEGQVVAITHMVASAVPDMSVRGVTIVDQDGNLLT 258

Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            A      +    L   Q I+   +  I+  L    G  N  S+V A+++   Q++    
Sbjct: 259 QAGANGAGLDATQLKYRQQIERNTQQRIDAILGPMFGTGNAHSSVSADIDFSRQELTSEK 318

Query: 278 YDPDSKVER-SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT------- 329
           Y P++  ++ +IR  + +  +E SQ  ++      +P     + P P S   T       
Sbjct: 319 YAPNNDPQQAAIRSQQTSTATEMSQSGAS-----GVPGALSNQPPQPASAPITASANGAS 373

Query: 330 --------DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI 381
                   D K+  +NYE++     T      ++RLS+AVVVN  R+ +  G +  Q   
Sbjct: 374 GVTTTPISDHKDSTTNYELSKTVSHTEAAVGGIKRLSVAVVVNYMRVFDAKGHATMQPIS 433

Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
              LA+++++V  A G +  RGDT+ + S  F +
Sbjct: 434 ADKLAQVDQLVKEAMGYDQARGDTVKVISSAFQQ 467


>gi|295678025|ref|YP_003606549.1| flagellar M-ring protein FliF [Burkholderia sp. CCGE1002]
 gi|295437868|gb|ADG17038.1| flagellar M-ring protein FliF [Burkholderia sp. CCGE1002]
          Length = 598

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 131/441 (29%), Positives = 213/441 (48%), Gaps = 28/441 (6%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  LY  L   D   I  AL +ANI +++S++G+++ VP+  V + R+ LA+Q
Sbjct: 85  LWSRAPSYKVLYSNLSDRDGGSIITALQQANIPYKLSESGTAVLVPAEQVHETRLRLASQ 144

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP S S  G+EL D    FG++ F +++   RALEGE+ RTI SIS + +ARVH+ +P 
Sbjct: 145 GLPKSGS-VGFELMDN-QKFGISQFDEQVNYQRALEGELERTIGSISSVKSARVHLAIPK 202

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV++      V    +  AI H+VA+AVP + +  VT+LD  G LLT
Sbjct: 203 PSVFVRDKEPPSASVLVNLYPGRVLDEGQVVAITHMVASAVPQMPVRGVTILDQDGNLLT 262

Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
                  +    L   Q I+   +  I+  LA   G  N RS V A+++    +     Y
Sbjct: 263 QPTNGSGLDATQLKFRQQIERNTQQRIDTILAPLFGAGNARSQVSADIDFSHSEQTSEKY 322

Query: 279 DPDSKVE-RSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRS------------ 325
            P++  +  +IR  + +  +E SQ  ++      +P     + P P S            
Sbjct: 323 GPNANPQDAAIRSQQTSSATEMSQGGAS-----GVPGALSNQPPQPASAPIVAGNGASSV 377

Query: 326 --LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS 383
                +D K+  +NYE++            + RL++AVVVN  R+ +  G    Q     
Sbjct: 378 STTPISDHKDSTTNYELDKTVRHIDQPMGGIRRLTVAVVVNYMRVVDPKGHVTMQPVSAD 437

Query: 384 YLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS--RHFATVIN 441
            LA+I ++V  A G ++ RGD++ + +  F  +   N+        D+L+  +  AT + 
Sbjct: 438 KLAQITQLVKDAMGYDASRGDSVNVVNSAFTTDLDPNADLPWWRTPDMLALYKQIATYLG 497

Query: 442 ALVFLVGTLLVTFLGLHALRR 462
             +  V   L   +   ALRR
Sbjct: 498 --IGAVALFLYFVMVKPALRR 516


>gi|77165822|ref|YP_344347.1| flagellar FliF M-ring protein [Nitrosococcus oceani ATCC 19707]
 gi|254434642|ref|ZP_05048150.1| flagellar M-ring protein FliF [Nitrosococcus oceani AFC27]
 gi|76884136|gb|ABA58817.1| Flagellar FliF M-ring protein [Nitrosococcus oceani ATCC 19707]
 gi|207090975|gb|EDZ68246.1| flagellar M-ring protein FliF [Nitrosococcus oceani AFC27]
          Length = 567

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 126/419 (30%), Positives = 218/419 (52%), Gaps = 45/419 (10%)

Query: 22  ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81
           + I ASV LV + +FM    +  +P Y  +Y  +   +   I  AL +ANI++R+++N  
Sbjct: 45  LAIAASVALV-VGIFM----WSWAPTYQVMYGAVTGKEKGEIVAALQKANIEYRLAENTG 99

Query: 82  SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
           +I VP+S V + R+ LA +GLP S+ ++G+EL ++   FG + F+++    RALEGE+AR
Sbjct: 100 AIMVPASKVHEVRLQLAMEGLPRSA-DTGFELLEQNPGFGASEFLEKARYQRALEGELAR 158

Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVA 196
           TI +++ +  ARVH+ +P    F +    P+ASV++     R ++P       AI HLVA
Sbjct: 159 TIGALNNVRNARVHLALPKQSVFIRNRRAPSASVVLDLYAGRTLDPG---QVAAITHLVA 215

Query: 197 AAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQA-------IQHEIEMNINKAL 249
           +++PNL+   VT++D  G LLT     R    +SL + +        ++ +    I   L
Sbjct: 216 SSIPNLESSGVTLVDQRGNLLT-----RQDRSQSLGMTEGQFEHTRRLEEKYISRIQHIL 270

Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309
           A  +G +  R+ VVAE++    +  +  Y+P S   RS ++S++ +R+ +  P+      
Sbjct: 271 APMIGSNKVRAQVVAEVDFTVTEQTQEYYNPGSAALRSEQMSEE-ERTGSRLPQGIPGAL 329

Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE-------------- 355
            N P    +    P ++   +  E Q      T+S   T  NY+L+              
Sbjct: 330 SNQPPADAQA---PETVPEANGDEAQIEPVPTTRSQRATR-NYELDRTISHSRLSPGSIR 385

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           RLS+AV+V++  +T+  G  +   +    LA++  +V  A G N+ RGDTI + +  F+
Sbjct: 386 RLSVAVLVDEKAVTDAEGAVSTLPRSPQELAQVTALVKEAVGFNAERGDTINVINAPFV 444


>gi|296534177|ref|ZP_06896667.1| flagellar M-ring protein FliF [Roseomonas cervicalis ATCC 49957]
 gi|296265497|gb|EFH11632.1| flagellar M-ring protein FliF [Roseomonas cervicalis ATCC 49957]
          Length = 525

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 131/424 (30%), Positives = 210/424 (49%), Gaps = 28/424 (6%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           +LG  R+  LA   L+ + L         +     LY  L+  D  +I  AL  A + +R
Sbjct: 42  ALGTARLAALAFTGLLTLGLIGFLTLRTATTPMGLLYGDLDQRDAAQIVAALERARVPYR 101

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135
           +  NG+ +  P   + + R+ LA  GLP+  S  GYE+FD+ +    T F Q+I R+RAL
Sbjct: 102 LGRNGTEVLAPEEDIPRLRLSLARDGLPAGGS-VGYEIFDRQSGLTTTPFQQDINRLRAL 160

Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI--RAINPSVYKSAEAIRH 193
           EGEIAR+I+ + G+ +ARVH+V+P    F +      ASV++  R I+    +  +A+ H
Sbjct: 161 EGEIARSIRGLDGVASARVHLVLPRREPFSRERGESQASVVLQMRGIHRLDREGVQAVLH 220

Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKA---- 248
           LVAAAVP L   ++ V+D  G+LL+   +   N L +S    + I+   EM + +A    
Sbjct: 221 LVAAAVPGLKPQNIAVVDGRGELLSRGGQAGANGLAQS---QEEIRRGQEMRMARAVEEM 277

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308
           L   LG    R+    E++ D  Q  E  +DP+++V           RS++S  ES+   
Sbjct: 278 LERILGPGRVRAEATIEMDHDRVQTTEERFDPENQVP----------RSQSSVNESSRNG 327

Query: 309 EQNMPHVSDRKVPLPRSLENTD------KKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
           EQ    V+++    P + +N+       ++EE  NYEI   +  T  D   + RLS+AV+
Sbjct: 328 EQQNVSVANQLPGAPPAQQNSGPQSQEARQEETVNYEIGRTTRNTLRDQPVVRRLSVAVL 387

Query: 363 VNK-GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           V+      E  G +  + +    +  I+ +V  A G N  RGD + + S+ F E    + 
Sbjct: 388 VDGVWEPGEAGGAARFRERTPQEMERISALVRGAIGFNETRGDRLEVVSLRFAEPVWGSD 447

Query: 422 GTVQ 425
           G  Q
Sbjct: 448 GESQ 451


>gi|114777411|ref|ZP_01452408.1| flagellar M-ring protein FliF [Mariprofundus ferrooxydans PV-1]
 gi|114552193|gb|EAU54695.1| flagellar M-ring protein FliF [Mariprofundus ferrooxydans PV-1]
          Length = 547

 Score =  173 bits (439), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 154/546 (28%), Positives = 264/546 (48%), Gaps = 60/546 (10%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           R  + I AS++L     F+    + +   Y  +Y  +E  D   +   L + +I +R+ +
Sbjct: 43  RLMLFIAASLMLAG---FIGLVLWSSEKPYRAVYAGMEEKDAATVVEMLQKEHIPYRL-E 98

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
            G ++ VP   V + R+ LA QG+ +    SGYELFDK N FGL+ F ++I   RA++GE
Sbjct: 99  GGGTVMVPEDQVYEVRMKLAGQGI-NPRGTSGYELFDKSNEFGLSDFTRKINLQRAMQGE 157

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195
           +ARTI+ +  + AARVH+V+P   +F     + TASVM++ ++ S   S     AI++LV
Sbjct: 158 LARTIEVMPQVSAARVHLVLPKESAFADRDRKATASVMLQ-LSGSQRLSKNTVLAIQNLV 216

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMER-NILGKSLSIVQA-IQHEIEMNINKALAAFL 253
           A++V  +++ DVTV+D++G LL+++E E  +  G++L   Q+ ++  +E  +   L   +
Sbjct: 217 ASSVAEMNVADVTVVDASGTLLSSSEKETPSSEGQTLQEYQSKLEQRLEQRLTGMLEQIV 276

Query: 254 GVDNFRSAVVAELN---MDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ----PESAV 306
           G       V A+++   +D Q  R   Y+PD +V RS +   ++  S +S     P  A 
Sbjct: 277 GEGQSVVRVSADIDREFIDQQSTR---YNPDEQVLRSRKSIVESHTSSSSGAMGVPGLAS 333

Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQ-SNYEINTKSIATTHDNYKLERLSIAVVVNK 365
               + P  S++    P    NT K+ E  +NYEI++ S         +++LS+A +V  
Sbjct: 334 NTPGSNPATSNKTAAAPSQPGNTAKRNEDVNNYEISSTSEHRVVPFGNIKKLSVAAIVGG 393

Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425
              T+  G      +  + LAEI K+V +A G +  RGD++T+ SM  ++    +S    
Sbjct: 394 HMQTDAKGVQTFVPRSRAELAEIQKLVESAMGYDEDRGDSVTVQSMPLMD---ISSSADT 450

Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN--IDDAKKGEVGGKSILSPP 483
            +     +R F   + A  + +  L +  LG   LR L     D     +  GK    P 
Sbjct: 451 AALDKAEARVF--YMKAARYGIAALALMLLGWFVLRPLAKRIQDSTPHDQTAGK----PA 504

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
           P++            + L  S     ++   ++S                 IE+  ER  
Sbjct: 505 PVTP-----------LHLSDSTYKRLANMEQVRSS----------------IELQPERAT 537

Query: 544 KILRKW 549
           K+LR+W
Sbjct: 538 KVLREW 543


>gi|284159411|ref|YP_440758.3| flagellar MS-ring protein [Burkholderia thailandensis E264]
 gi|83653465|gb|ABC37528.1| flagellar M-ring protein FliF [Burkholderia thailandensis E264]
          Length = 677

 Score =  173 bits (439), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 118/391 (30%), Positives = 193/391 (49%), Gaps = 27/391 (6%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 161 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 220

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++S++ + AARVH+ +P  
Sbjct: 221 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESVNAVRAARVHLAIPKP 278

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++      V    +  AI  LV+++VP++   +VT++D  G LLT 
Sbjct: 279 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAITRLVSSSVPDMPAKNVTIVDQDGNLLTQ 338

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 339 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYA 398

Query: 280 PDSKVERS-IRLSKDAQRSE----------------TSQPESAVTVEQNMPHVSDRKVPL 322
           P+   ++S IR  + +  +E                  QP SA  V  N    +    P+
Sbjct: 399 PNGTPQQSAIRSQQTSTSTELAQSGTSGVPGALSNTPPQPASAPIVASNGQPAAPAATPV 458

Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382
                 +D+K+  +NYE++            ++RLS+AVVVN    T+  GR   Q    
Sbjct: 459 ------SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLTA 512

Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413
             LA++ ++V  A G + +RGD++ + +  F
Sbjct: 513 DKLAQVQQLVKDAMGYDEKRGDSVNVVNSAF 543


>gi|167717602|ref|ZP_02400838.1| flagellar MS-ring protein [Burkholderia pseudomallei DM98]
          Length = 476

 Score =  173 bits (439), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 117/391 (29%), Positives = 193/391 (49%), Gaps = 27/391 (6%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 44  WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 103

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++SI+ + AARVH+ +P  
Sbjct: 104 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 161

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++      V    +  A+  +V+++VP++   +VT++D  G LLT 
Sbjct: 162 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 221

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 222 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 281

Query: 280 PDSKVERS-IRLSKDAQRSETS----------------QPESAVTVEQNMPHVSDRKVPL 322
           P+   ++S IR  + +  +E +                QP SA  V  N         P+
Sbjct: 282 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 341

Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382
                 +D+K+  +NYE++            ++RLS+AVVVN    T+  GR   Q    
Sbjct: 342 ------SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAA 395

Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413
             LA++ ++V  A G + +RGD++ + +  F
Sbjct: 396 DKLAQVQQLVKDAMGYDEKRGDSVNVVNSAF 426


>gi|291617848|ref|YP_003520590.1| FliF [Pantoea ananatis LMG 20103]
 gi|291152878|gb|ADD77462.1| FliF [Pantoea ananatis LMG 20103]
          Length = 572

 Score =  173 bits (439), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 150/557 (26%), Positives = 252/557 (45%), Gaps = 74/557 (13%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P+Y  L+  L   D   I   L++ N+ +R +DNG ++ VP   V + R+ LA Q
Sbjct: 47  LWAKTPNYSVLFSNLSNEDGGAIVTQLTQMNVPYRFADNGGALMVPEDKVHELRLRLAEQ 106

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP    N G+EL DK   FG++ F +++   RALEGE+ARTI+S+  +  ARVH+ MP 
Sbjct: 107 GLPKGG-NVGFELLDK-EKFGISQFSEQVNYQRALEGELARTIESLGPVKTARVHLAMPK 164

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    P+ASV +     RA++       +AI H+V+++V  L  G+VTV+D +G 
Sbjct: 165 PTLFVREQKAPSASVTLTLQPGRALDEG---QIQAITHMVSSSVAGLPPGNVTVVDQSGH 221

Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT ++ + R++    L     ++   +  I   L   LG  N  + V A++N DT +  
Sbjct: 222 LLTRSDAVGRDLNDAQLKYAAEVEARYQQRIEAILNPILGQGNVHAQVTAQINFDTSEQT 281

Query: 275 EIVYDPDSKVERSIRLSKDAQRSETS--------------QPESAVTVEQNMPHVSDRKV 320
           +  Y P+   + +   S+    SE S              QP  A T   N P+ +    
Sbjct: 282 DEKYQPNGDPKNASIRSQQTSTSEQSGSPYPGGVPGALSNQPAPANTAPVNAPNTNAANG 341

Query: 321 PL-----------------PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
                                S+    ++++  NYE++     T  +   ++RLS+AVVV
Sbjct: 342 QNANGQNNAANGQRTSTASASSVPTNSRRDDTVNYELDRTIRHTKMNVGDVQRLSVAVVV 401

Query: 364 NKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           N         R  D+GK     +  L +I  +   A G + +RGD++ +       N  F
Sbjct: 402 NY--------REDDKGKALALNEQQLKQIEDLTREAMGYSQQRGDSVNVV------NSQF 447

Query: 420 NSGTVQVSFMDILSRH--FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
           N+    VS +    +   F  +I+A  +L+   LV F+      R H +   +  E G +
Sbjct: 448 NTTEPTVSELPFWQQQSFFDQLISAGKWLL-VALVAFILYRKTVRPHVLRKKEAEESGCR 506

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
           S     P  +A  +G +         + Q      R   +R+++ V  Q   R+  M E 
Sbjct: 507 SDGC--PCCTAKRSGSLQR------PAQQREMEQERKTNNRMSAEVMSQ---RIRDMSEN 555

Query: 538 NEERFAKILRKWARSEI 554
           +    A ++R+W  +E+
Sbjct: 556 DPRVVALVIREWMGNEL 572


>gi|167892353|ref|ZP_02479755.1| flagellar MS-ring protein [Burkholderia pseudomallei 7894]
          Length = 495

 Score =  173 bits (439), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 117/391 (29%), Positives = 192/391 (49%), Gaps = 27/391 (6%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 58  WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 117

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++SI+ + AARVH+ +P  
Sbjct: 118 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 175

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++      V    +  A+  +V+++VP++   +VT++D  G LLT 
Sbjct: 176 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 235

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 236 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 295

Query: 280 PDSKVERS-IRLSKDAQRSE----------------TSQPESAVTVEQNMPHVSDRKVPL 322
           P+   ++S IR  + +  +E                  QP SA  V  N         P+
Sbjct: 296 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 355

Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382
                 +D+K+  +NYE++            ++RLS+AVVVN    T+  GR   Q    
Sbjct: 356 ------SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAA 409

Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413
             LA++ ++V  A G + +RGD++ + +  F
Sbjct: 410 DKLAQVQQLVKDAMGYDEKRGDSVNVVNSAF 440


>gi|167917106|ref|ZP_02504197.1| flagellar MS-ring protein [Burkholderia pseudomallei BCC215]
          Length = 490

 Score =  173 bits (438), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 117/391 (29%), Positives = 192/391 (49%), Gaps = 27/391 (6%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 56  WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 115

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++SI+ + AARVH+ +P  
Sbjct: 116 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 173

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++      V    +  A+  +V+++VP++   +VT++D  G LLT 
Sbjct: 174 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 233

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 234 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 293

Query: 280 PDSKVERS-IRLSKDAQRSE----------------TSQPESAVTVEQNMPHVSDRKVPL 322
           P+   ++S IR  + +  +E                  QP SA  V  N         P+
Sbjct: 294 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 353

Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382
                 +D+K+  +NYE++            ++RLS+AVVVN    T+  GR   Q    
Sbjct: 354 ------SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAA 407

Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413
             LA++ ++V  A G + +RGD++ + +  F
Sbjct: 408 DKLAQVQQLVKDAMGYDEKRGDSVNVVNSAF 438


>gi|167822258|ref|ZP_02453729.1| flagellar MS-ring protein [Burkholderia pseudomallei 9]
          Length = 488

 Score =  173 bits (438), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 117/391 (29%), Positives = 192/391 (49%), Gaps = 27/391 (6%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 54  WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 113

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++SI+ + AARVH+ +P  
Sbjct: 114 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 171

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++      V    +  A+  +V+++VP++   +VT++D  G LLT 
Sbjct: 172 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 231

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 232 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 291

Query: 280 PDSKVERS-IRLSKDAQRSE----------------TSQPESAVTVEQNMPHVSDRKVPL 322
           P+   ++S IR  + +  +E                  QP SA  V  N         P+
Sbjct: 292 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 351

Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382
                 +D+K+  +NYE++            ++RLS+AVVVN    T+  GR   Q    
Sbjct: 352 ------SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAA 405

Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413
             LA++ ++V  A G + +RGD++ + +  F
Sbjct: 406 DKLAQVQQLVKDAMGYDEKRGDSVNVVNSAF 436


>gi|167909065|ref|ZP_02496156.1| flagellar MS-ring protein [Burkholderia pseudomallei 112]
          Length = 573

 Score =  173 bits (438), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 117/391 (29%), Positives = 192/391 (49%), Gaps = 27/391 (6%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 56  WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 115

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++SI+ + AARVH+ +P  
Sbjct: 116 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 173

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++      V    +  A+  +V+++VP++   +VT++D  G LLT 
Sbjct: 174 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 233

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 234 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 293

Query: 280 PDSKVERS-IRLSKDAQRSE----------------TSQPESAVTVEQNMPHVSDRKVPL 322
           P+   ++S IR  + +  +E                  QP SA  V  N         P+
Sbjct: 294 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 353

Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382
                 +D+K+  +NYE++            ++RLS+AVVVN    T+  GR   Q    
Sbjct: 354 ------SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAA 407

Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413
             LA++ ++V  A G + +RGD++ + +  F
Sbjct: 408 DKLAQVQQLVKDAMGYDEKRGDSVNVVNSAF 438


>gi|78355400|ref|YP_386849.1| flagellar M-ring protein FliF [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78217805|gb|ABB37154.1| flagellar M-ring protein FliF [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 539

 Score =  173 bits (438), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 128/450 (28%), Positives = 236/450 (52%), Gaps = 19/450 (4%)

Query: 21  RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80
           R+ I+   ++V + +F    F++N P Y  LY KL   D NR+   L    + +R+ + G
Sbjct: 23  RVFIVGLTVVV-VGIFFGLIFWINQPDYRVLYSKLTPEDANRVVTVLQAQKVRYRLDNGG 81

Query: 81  SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140
           S+I VP+  V   R+ +A +G        G+E+FD++   G T F+Q+I   RAL+GE++
Sbjct: 82  STIMVPADRVYDMRLMVAGEG-SVVGQGVGFEIFDQIK-VGQTDFVQKINYQRALQGELS 139

Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAA 198
           RTI     + +ARVH+V+P    F +   +P+ASV+++  +      K  +A+ +LV  +
Sbjct: 140 RTIAEFPAVESARVHLVIPHRSLFIEEQMQPSASVVLKLQDGKKMDEKDVQAVVNLVTMS 199

Query: 199 VPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ---AIQHEIEMNINKALAAFLGV 255
           V  LD G ++V D++GK+L   + E+++ G + + ++    +Q   E  I + L   +G 
Sbjct: 200 VEGLDQGKISVADTSGKILYYPKDEQSLDGMTSTQLEHKLTMQQNFERRIEELLYPVIGP 259

Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV 315
               + V A+L+   + IR+ ++DP+S V RS   +++A++  ++       V   +P  
Sbjct: 260 GKVIAKVNADLDFSQKTIRKKLFDPESSVVRSEIRTEEARKGTSN-------VNAGVPEA 312

Query: 316 SDRKVPLP--RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG-RLTEVL 372
           + R   +    S E+++++   +NYEIN +         +L+RLS+AV+V+      E  
Sbjct: 313 NFRGDGMSGGTSTEDSNRETRNTNYEINEEEQNIIAPVGQLDRLSVAVIVDGTYEKNEET 372

Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDIL 432
           G      + D  +A I ++V++A G +  RGD + ++S+ F   +     ++    MD  
Sbjct: 373 GEWTYVPRSDEEVARIRQLVASAVGFDRARGDVLEVSSISFGGPEADTYMSLAEVIMDYA 432

Query: 433 SRHFATVINA-LVFLVGTLLVTFLGLHALR 461
            R    ++NA LVFL   ++V  + L  +R
Sbjct: 433 LRLGKPLLNALLVFLFLVMVVRPVVLALIR 462


>gi|126441455|ref|YP_001057275.1| flagellar MS-ring protein [Burkholderia pseudomallei 668]
 gi|217425051|ref|ZP_03456547.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 576]
 gi|254295774|ref|ZP_04963231.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 406e]
 gi|126220948|gb|ABN84454.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 668]
 gi|157805913|gb|EDO83083.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 406e]
 gi|217392071|gb|EEC32097.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 576]
          Length = 598

 Score =  173 bits (438), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 117/391 (29%), Positives = 192/391 (49%), Gaps = 27/391 (6%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 81  WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 140

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++SI+ + AARVH+ +P  
Sbjct: 141 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 198

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++      V    +  A+  +V+++VP++   +VT++D  G LLT 
Sbjct: 199 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 258

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 259 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 318

Query: 280 PDSKVERS-IRLSKDAQRSE----------------TSQPESAVTVEQNMPHVSDRKVPL 322
           P+   ++S IR  + +  +E                  QP SA  V  N         P+
Sbjct: 319 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 378

Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382
                 +D+K+  +NYE++            ++RLS+AVVVN    T+  GR   Q    
Sbjct: 379 ------SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAA 432

Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413
             LA++ ++V  A G + +RGD++ + +  F
Sbjct: 433 DKLAQVQQLVKDAMGYDEKRGDSVNVVNSAF 463


>gi|53717872|ref|YP_106858.1| flagellar MS-ring protein [Burkholderia pseudomallei K96243]
 gi|126453288|ref|YP_001064517.1| flagellar MS-ring protein [Burkholderia pseudomallei 1106a]
 gi|134283661|ref|ZP_01770360.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 305]
 gi|162210024|ref|YP_331831.2| flagellar MS-ring protein [Burkholderia pseudomallei 1710b]
 gi|226199798|ref|ZP_03795349.1| flagellar M-ring protein FliF [Burkholderia pseudomallei Pakistan
           9]
 gi|242317746|ref|ZP_04816762.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1106b]
 gi|254182183|ref|ZP_04888780.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1655]
 gi|254188113|ref|ZP_04894625.1| flagellar M-ring protein FliF [Burkholderia pseudomallei Pasteur
           52237]
 gi|254196619|ref|ZP_04903043.1| flagellar M-ring protein FliF [Burkholderia pseudomallei S13]
 gi|254259466|ref|ZP_04950520.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1710a]
 gi|52208286|emb|CAH34218.1| flagellar M-ring protein [Burkholderia pseudomallei K96243]
 gi|126226930|gb|ABN90470.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1106a]
 gi|134245070|gb|EBA45165.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 305]
 gi|157935793|gb|EDO91463.1| flagellar M-ring protein FliF [Burkholderia pseudomallei Pasteur
           52237]
 gi|169653362|gb|EDS86055.1| flagellar M-ring protein FliF [Burkholderia pseudomallei S13]
 gi|184212721|gb|EDU09764.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1655]
 gi|225928149|gb|EEH24185.1| flagellar M-ring protein FliF [Burkholderia pseudomallei Pakistan
           9]
 gi|242140985|gb|EES27387.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1106b]
 gi|254218155|gb|EET07539.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1710a]
          Length = 598

 Score =  173 bits (438), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 117/391 (29%), Positives = 192/391 (49%), Gaps = 27/391 (6%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 81  WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 140

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++SI+ + AARVH+ +P  
Sbjct: 141 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 198

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++      V    +  A+  +V+++VP++   +VT++D  G LLT 
Sbjct: 199 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 258

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 259 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 318

Query: 280 PDSKVERS-IRLSKDAQRSE----------------TSQPESAVTVEQNMPHVSDRKVPL 322
           P+   ++S IR  + +  +E                  QP SA  V  N         P+
Sbjct: 319 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 378

Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382
                 +D+K+  +NYE++            ++RLS+AVVVN    T+  GR   Q    
Sbjct: 379 ------SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAA 432

Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413
             LA++ ++V  A G + +RGD++ + +  F
Sbjct: 433 DKLAQVQQLVKDAMGYDEKRGDSVNVVNSAF 463


>gi|237810412|ref|YP_002894863.1| flagellar M-ring protein FliF [Burkholderia pseudomallei MSHR346]
 gi|237505247|gb|ACQ97565.1| flagellar M-ring protein FliF [Burkholderia pseudomallei MSHR346]
          Length = 598

 Score =  173 bits (438), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 117/391 (29%), Positives = 192/391 (49%), Gaps = 27/391 (6%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 81  WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 140

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++SI+ + AARVH+ +P  
Sbjct: 141 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 198

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++      V    +  A+  +V+++VP++   +VT++D  G LLT 
Sbjct: 199 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 258

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 259 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 318

Query: 280 PDSKVERS-IRLSKDAQRSE----------------TSQPESAVTVEQNMPHVSDRKVPL 322
           P+   ++S IR  + +  +E                  QP SA  V  N         P+
Sbjct: 319 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 378

Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382
                 +D+K+  +NYE++            ++RLS+AVVVN    T+  GR   Q    
Sbjct: 379 ------SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAA 432

Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413
             LA++ ++V  A G + +RGD++ + +  F
Sbjct: 433 DKLAQVQQLVKDAMGYDEKRGDSVNVVNSAF 463


>gi|167813742|ref|ZP_02445422.1| flagellar MS-ring protein [Burkholderia pseudomallei 91]
          Length = 559

 Score =  173 bits (438), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 117/391 (29%), Positives = 192/391 (49%), Gaps = 27/391 (6%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 42  WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 101

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++SI+ + AARVH+ +P  
Sbjct: 102 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 159

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++      V    +  A+  +V+++VP++   +VT++D  G LLT 
Sbjct: 160 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 219

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 220 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 279

Query: 280 PDSKVERS-IRLSKDAQRSE----------------TSQPESAVTVEQNMPHVSDRKVPL 322
           P+   ++S IR  + +  +E                  QP SA  V  N         P+
Sbjct: 280 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 339

Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382
                 +D+K+  +NYE++            ++RLS+AVVVN    T+  GR   Q    
Sbjct: 340 ------SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAA 393

Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413
             LA++ ++V  A G + +RGD++ + +  F
Sbjct: 394 DKLAQVQQLVKDAMGYDEKRGDSVNVVNSAF 424


>gi|76581502|gb|ABA50977.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1710b]
          Length = 627

 Score =  173 bits (438), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 117/391 (29%), Positives = 192/391 (49%), Gaps = 27/391 (6%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 110 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 169

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++SI+ + AARVH+ +P  
Sbjct: 170 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 227

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++      V    +  A+  +V+++VP++   +VT++D  G LLT 
Sbjct: 228 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 287

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 288 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 347

Query: 280 PDSKVERS-IRLSKDAQRSE----------------TSQPESAVTVEQNMPHVSDRKVPL 322
           P+   ++S IR  + +  +E                  QP SA  V  N         P+
Sbjct: 348 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 407

Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382
                 +D+K+  +NYE++            ++RLS+AVVVN    T+  GR   Q    
Sbjct: 408 ------SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAA 461

Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413
             LA++ ++V  A G + +RGD++ + +  F
Sbjct: 462 DKLAQVQQLVKDAMGYDEKRGDSVNVVNSAF 492


>gi|167900849|ref|ZP_02488054.1| flagellar MS-ring protein [Burkholderia pseudomallei NCTC 13177]
          Length = 500

 Score =  173 bits (438), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 117/391 (29%), Positives = 192/391 (49%), Gaps = 27/391 (6%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 56  WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 115

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++SI+ + AARVH+ +P  
Sbjct: 116 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 173

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++      V    +  A+  +V+++VP++   +VT++D  G LLT 
Sbjct: 174 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 233

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 234 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 293

Query: 280 PDSKVERS-IRLSKDAQRSE----------------TSQPESAVTVEQNMPHVSDRKVPL 322
           P+   ++S IR  + +  +E                  QP SA  V  N         P+
Sbjct: 294 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 353

Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382
                 +D+K+  +NYE++            ++RLS+AVVVN    T+  GR   Q    
Sbjct: 354 ------SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAA 407

Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413
             LA++ ++V  A G + +RGD++ + +  F
Sbjct: 408 DKLAQVQQLVKDAMGYDEKRGDSVNVVNSAF 438


>gi|167843852|ref|ZP_02469360.1| flagellar MS-ring protein [Burkholderia pseudomallei B7210]
          Length = 565

 Score =  172 bits (437), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 117/391 (29%), Positives = 192/391 (49%), Gaps = 27/391 (6%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 48  WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 107

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++SI+ + AARVH+ +P  
Sbjct: 108 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 165

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++      V    +  A+  +V+++VP++   +VT++D  G LLT 
Sbjct: 166 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 225

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 226 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 285

Query: 280 PDSKVERS-IRLSKDAQRSE----------------TSQPESAVTVEQNMPHVSDRKVPL 322
           P+   ++S IR  + +  +E                  QP SA  V  N         P+
Sbjct: 286 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 345

Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382
                 +D+K+  +NYE++            ++RLS+AVVVN    T+  GR   Q    
Sbjct: 346 ------SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAA 399

Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413
             LA++ ++V  A G + +RGD++ + +  F
Sbjct: 400 DKLAQVQQLVKDAMGYDEKRGDSVNVVNSAF 430


>gi|167736645|ref|ZP_02409419.1| flagellar MS-ring protein [Burkholderia pseudomallei 14]
          Length = 465

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 117/391 (29%), Positives = 192/391 (49%), Gaps = 27/391 (6%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 53  WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 112

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++SI+ + AARVH+ +P  
Sbjct: 113 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 170

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++      V    +  A+  +V+++VP++   +VT++D  G LLT 
Sbjct: 171 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 230

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 231 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 290

Query: 280 PDSKVERS-IRLSKDAQRSE----------------TSQPESAVTVEQNMPHVSDRKVPL 322
           P+   ++S IR  + +  +E                  QP SA  V  N         P+
Sbjct: 291 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 350

Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382
                 +D+K+  +NYE++            ++RLS+AVVVN    T+  GR   Q    
Sbjct: 351 ------SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAA 404

Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413
             LA++ ++V  A G + +RGD++ + +  F
Sbjct: 405 DKLAQVQQLVKDAMGYDEKRGDSVNVVNSAF 435


>gi|307944136|ref|ZP_07659477.1| flagellar M-ring protein FliF [Roseibium sp. TrichSKD4]
 gi|307772482|gb|EFO31702.1| flagellar M-ring protein FliF [Roseibium sp. TrichSKD4]
          Length = 537

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 134/417 (32%), Positives = 218/417 (52%), Gaps = 18/417 (4%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVI--LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           ++ L++F K+   LG TR+  + +V   LV I  F+  R  V +P    LY  L + D  
Sbjct: 1   MNGLIEFIKT---LGPTRVAAMGAVAAMLVGIFAFIILR--VTAPQMTTLYSDLTLEDSG 55

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L    + + +  NG+++ VP   V + R+ LA  GLP+  S  GYE+FD+ ++ G
Sbjct: 56  AIVSRLEGMGVPYELGRNGATVMVPRERVARLRMQLAEDGLPTGGS-IGYEIFDRSDTLG 114

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
            TSF+Q I  +RALEGE+AR+I +I  I +ARVH+V+P+   F++    PT S+++    
Sbjct: 115 ATSFVQNINHLRALEGELARSIAAIDRIQSARVHLVIPERQLFQRDQRAPTGSIVLNVRG 174

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSL-SIVQAIQ 238
                   A++HLVA AV  L    V+V+D TG+LL   A   E  I+G SL   V AI+
Sbjct: 175 TLGQGEIRAVQHLVATAVEGLRPESVSVVDETGRLLASGAESDEEGIIGNSLQERVFAIE 234

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAEL--NMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
             ++  + + L++ +G    R  V A++  N  T+ I    +DP+ +V RS +  ++A  
Sbjct: 235 SRLKGQVEEILSSVVGPGRSRVRVAADVDFNRTTETIE--TFDPEGQVVRSTQTKEEA-- 290

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
           S +++  + VTV   +P+  D       S E T   EE  NYEI+  +     +  +++R
Sbjct: 291 SSSTERTNEVTVGNELPNGGDNNG-GEGSNEETTATEEIVNYEISRSTKTEIVEAGRVQR 349

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           LS+AV+V+        G      +    L  I  +V +A G +  RGD + + ++ F
Sbjct: 350 LSVAVLVDGTYGPNADGEVVYTPRTQETLDRIALLVRSAVGFDEGRGDIVEVVNLQF 406


>gi|134297240|ref|YP_001120975.1| flagellar MS-ring protein [Burkholderia vietnamiensis G4]
 gi|134140397|gb|ABO56140.1| flagellar M-ring protein FliF [Burkholderia vietnamiensis G4]
          Length = 587

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 117/390 (30%), Positives = 194/390 (49%), Gaps = 24/390 (6%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VPS+ V + R+ LAA 
Sbjct: 79  LWSRTPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSNQVHETRLKLAAM 138

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   S  G+EL D    FG++ F +++   RALEGE+ RTI+SI+ +  ARVH+ +P 
Sbjct: 139 GLPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLAIPK 196

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV I      V      +AI  +V++ VP++   +VT++D  G LLT
Sbjct: 197 PSVFVRDKEAPSASVFIDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGNLLT 256

Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
                  +    L  VQ ++   +  I+  LA   G  N RS V A+++    +     Y
Sbjct: 257 QPASASGLDASQLKYVQQVERNTQKRIDSILAPIFGTGNARSQVSADIDFSKLEQTSESY 316

Query: 279 DPDSKVER-SIRLSKDAQRSETSQ--------------PESAVTVEQNMPHVSDRKVPLP 323
            P+   ++ +IR  + +  +E +Q              P+ A     + P V+      P
Sbjct: 317 GPNGTPQQAAIRSQQTSSATELAQGGASGVPGALSNTPPQPA-----SAPIVAGNGQSGP 371

Query: 324 RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS 383
           +S   +D+K++ +NYE++            ++RLS+AVVVN   + +  G    Q    +
Sbjct: 372 QSTPVSDRKDQTTNYELDKTIRHVEQPMGNVKRLSVAVVVNYQPVADAKGHVTMQPLPPA 431

Query: 384 YLAEINKIVSAATGINSRRGDTITITSMDF 413
            LA+I ++V  A G + +RGD++ + +  F
Sbjct: 432 KLAQIEQLVKDAMGYDEKRGDSVNVVNSAF 461


>gi|254251157|ref|ZP_04944475.1| Flagellar biosynthesis/type III secretory pathway lipoprotein
           [Burkholderia dolosa AUO158]
 gi|124893766|gb|EAY67646.1| Flagellar biosynthesis/type III secretory pathway lipoprotein
           [Burkholderia dolosa AUO158]
          Length = 588

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 117/390 (30%), Positives = 194/390 (49%), Gaps = 24/390 (6%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VPSS V + R+ LAA 
Sbjct: 79  LWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSSQVHETRLKLAAM 138

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   S  G+EL D    FG++ F ++I   RALEGE+ RTI+SI+ +  ARVH+ +P 
Sbjct: 139 GLPKGGS-VGFELMDN-QKFGISQFAEQINYQRALEGELQRTIESINAVRGARVHLAIPK 196

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +      V      +AI  +V++ VP++   +VT++D  G LLT
Sbjct: 197 PSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGNLLT 256

Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
                  +    L  VQ ++   +  I+  LA   G  N RS V A+++    +     Y
Sbjct: 257 QTASATGLDASQLKYVQQVERNTQKRIDAILAPIFGAGNARSQVSADIDFSKLEQTSESY 316

Query: 279 DPDSKVER-SIRLSKDAQRSETSQ--------------PESAVTVEQNMPHVSDRKVPLP 323
            P+   ++ +IR  + +  +E +Q              P+ A     + P V+      P
Sbjct: 317 APNGTPQQAAIRSQQTSTSTELAQSGASGVPGALSNTPPQPA-----SAPIVAGNGQNGP 371

Query: 324 RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS 383
           ++   +D+K++ +NYE++            ++RLS+AVVVN   + +  G    Q    +
Sbjct: 372 QTTPVSDRKDQTTNYELDKTIRHVEQPMGSVKRLSVAVVVNYQPVADAKGHVTMQPLPPA 431

Query: 384 YLAEINKIVSAATGINSRRGDTITITSMDF 413
            LA+I ++V  A G + +RGD++ + +  F
Sbjct: 432 KLAQIEQLVKDAMGYDQKRGDSVNVVNSAF 461


>gi|237653561|ref|YP_002889875.1| flagellar MS-ring protein [Thauera sp. MZ1T]
 gi|237624808|gb|ACR01498.1| flagellar M-ring protein FliF [Thauera sp. MZ1T]
          Length = 571

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 133/449 (29%), Positives = 213/449 (47%), Gaps = 44/449 (9%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L+  D  +I   L + NI +R+S  G +I VP + V + R+ LAA 
Sbjct: 59  LWNRAPEYAVLFSNLDERDGGQIIAELQQRNIPYRMSPTGHAILVPQAQVHETRLRLAAD 118

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP  S  +G+EL D     G++ F +++   RALEGE+ RT+Q+I  + +ARVH+ MP 
Sbjct: 119 GLPKGSL-AGFELMDG-QKLGISQFNEQVNYQRALEGELTRTVQAIDAVASARVHLAMPK 176

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
             +F +   RPTASVM+     R ++P        I HLV+++VP +    V ++D  GK
Sbjct: 177 QTAFLRDDQRPTASVMVNLRGGRILSPD---QVAGIVHLVSSSVPRMHAEGVKIVDQNGK 233

Query: 216 LLT--ANEMERNIL-GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272
           LLT  A+ + R  L    L  V+ ++      I+K LA  +G  N+ + V A+++ +  +
Sbjct: 234 LLTEQADPLLRAGLDATQLEYVRLLEQGFIERIDKILAPLVGKGNYGAQVAADVDFNQVE 293

Query: 273 IREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332
                Y P+   +++IR     Q SE   P+      Q +P     + P+P +   T+ +
Sbjct: 294 QTAETYKPNPTPDQAIR---SQQTSEAFNPQPGA---QGVPGALTNQPPVPATAPITNPQ 347

Query: 333 EEQS---------------NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSAD 377
                              NYE++           +++RLS+AVVVN   L    G   +
Sbjct: 348 VAGGGGAQGLASGNRSAVLNYELDRNIQHVKQAVGQIKRLSVAVVVNNRTLPGPDGTPTN 407

Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMD----ILS 433
               D  +A I  +V  A G N+ RGDTI + S  F ++    SG     + D     L 
Sbjct: 408 VPLPDEEIARITNLVREAVGYNADRGDTINVASGAFADD---GSGAAPPPWKDPEIVALG 464

Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRR 462
           +     +N L+ L+  L   F  +  L R
Sbjct: 465 KEG---LNWLLVLIAILFAYFGVIRPLLR 490


>gi|327399353|ref|YP_004340222.1| flagellar M-ring protein FliF [Hippea maritima DSM 10411]
 gi|327181982|gb|AEA34163.1| flagellar M-ring protein FliF [Hippea maritima DSM 10411]
          Length = 550

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 135/438 (30%), Positives = 224/438 (51%), Gaps = 43/438 (9%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASV-ILVPIMLFM--AARFFVNSPHYDNLYVKLEVSDV 60
           L+Q+ +F+   T   + RI++ +SV +LV  +LF+  A+     +P + NL  K    D 
Sbjct: 7   LEQVKKFY--NTMNRQQRIILFSSVGVLVAGILFILIASSKVAYAPLFTNLNAK----DA 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           + I   L++  + +++ + G+ I VP  MV   R+ L A GLP      G+E+FDK N F
Sbjct: 61  SDIVTYLNQHGVKYKLINGGTVIEVPKDMVYSLRLDLVAAGLPKHGV-VGFEIFDKQN-F 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
             T+F++ I  +RALEGE+ RTI +I+ I +A+V+I +P    F +    PTAS+++   
Sbjct: 119 STTNFVENINYIRALEGELTRTIANINEIKSAKVNIAIPKPTIFTESQQPPTASIVLDLY 178

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-GKSLSIVQAIQH 239
            P   +   AI+ LVA+AVP L   DVT++DS G LL+ N  +  +L    L   Q I+ 
Sbjct: 179 KPLTRQQIVAIQKLVASAVPGLSYKDVTIVDSDGNLLSVNIPDEQLLTANELKYKQFIEQ 238

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
             +  I   LA  LG D F  +V  EL++   + + ++YDP+S V     +S++ + S +
Sbjct: 239 RYKSRIKSMLAPILGKDKFVVSVDVELDLSKIKKKSVIYDPNSVV-----VSEENEESTS 293

Query: 300 SQPESAVTVEQNMPHV-----SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
           + P S       +P V     +            + K +  +NY++      T     K+
Sbjct: 294 TTPTSG-----GVPGVISNIDNKTNAAAASGTAKSSKSKTITNYDVGRTETITEGPLIKI 348

Query: 355 ERLSIAVVVN---------KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
           +++S AVVV+         KG++     +S  Q  I +    I + V +A G +++RGD 
Sbjct: 349 KKISAAVVVDGIYEPVKNKKGKVVSYKFKSLPQNTIST----IQQAVMSAIGYDNKRGDK 404

Query: 406 ITITSMDFL---ENQLFN 420
           +T+T M F    E Q+ N
Sbjct: 405 VTVTCMKFAMSGEKQMGN 422


>gi|18182538|gb|AAL65160.1|AF453480_2 flagellar MS ring protein [Burkholderia cepacia]
          Length = 587

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 115/385 (29%), Positives = 191/385 (49%), Gaps = 14/385 (3%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VPS+ V + R+ LAA 
Sbjct: 78  LWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSNQVHETRLKLAAM 137

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   S  G+EL D    FG++ F ++I   RALEGE+ RTI+SI+ +  ARVH+ +P 
Sbjct: 138 GLPKGGS-VGFELMDN-QKFGISQFAEQINYQRALEGELQRTIESINAVRGARVHLAIPK 195

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +      V      +AI  +V++ VP++   +VT++D  G LLT
Sbjct: 196 PSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGNLLT 255

Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
                  +    L  VQ ++H  +  I+  LA   G  N RS V A+L+    +     Y
Sbjct: 256 QTASASGLDASQLKYVQQVEHNTQKRIDAILAPIFGAGNARSQVSADLDFSKIEQTSESY 315

Query: 279 DPDSKVER-SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPL---------PRSLEN 328
            P+   ++ +IR  + +  +E +Q        +       R             P++   
Sbjct: 316 GPNGTPQQAAIRSQQTSSATELAQAARRACRARCRTRRRSRPPRRSSPGNGQNAPQTTPV 375

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           +D+K++ +NYE++     T      ++RLS+AVVVN   + +  G    Q    + LA++
Sbjct: 376 SDRKDQTTNYELDKTIRHTEQPMGSVKRLSVAVVVNYQPVADAKGHVTMQPLPPAKLAQV 435

Query: 389 NKIVSAATGINSRRGDTITITSMDF 413
            ++V  A G + +RGD++ + +  F
Sbjct: 436 EQLVKDAMGYDEKRGDSVNVVNSAF 460


>gi|222053602|ref|YP_002535964.1| flagellar M-ring protein FliF [Geobacter sp. FRC-32]
 gi|221562891|gb|ACM18863.1| flagellar M-ring protein FliF [Geobacter sp. FRC-32]
          Length = 522

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 139/475 (29%), Positives = 233/475 (49%), Gaps = 34/475 (7%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L +LL  F    SL  ++ LI+A V    ++ F A  F  N   Y  L+  L   D   I
Sbjct: 5   LKKLLDPF---LSLPTSKRLIVAGVAACSLLAFAALIFVANRTDYRPLFANLTTEDAGEI 61

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L +  + ++IS +G +I VPS  V + R+ LA +GLP      G+E+FD+ N FG+T
Sbjct: 62  VKKLKDQKVAYQISADGKAILVPSDKVYELRLSLAGEGLPQGG-GIGFEIFDRKN-FGMT 119

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
            F+Q++   RAL+GE++RTI  ++G+  ARVH+V+P+   F+     PTASV+++  +  
Sbjct: 120 EFVQKLNYQRALQGELSRTIAQLAGVEQARVHLVIPEKSLFKDSEKPPTASVVLKMKSNR 179

Query: 184 VYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEI 241
             +  E   + HLV++A+  +D  +VTVLDS GK+L+      +  GK  S +Q  Q   
Sbjct: 180 TLRENEVQGVVHLVSSAIEGMDTENVTVLDSRGKVLSRT-GPSDATGKLTSTMQETQRNY 238

Query: 242 EMNINKALAAFLG--VDNFRSAVVAELNMDTQQIR--EIVYDPDSKVERSIRLSKDAQRS 297
           E N+ + L + L   V + RS        D +Q+   E  YDP++   RS       QRS
Sbjct: 239 EKNLEERLQSLLDKVVGSGRSVARVSATFDFKQVEKYEEKYDPETAAVRS------EQRS 292

Query: 298 ETSQPESAVTVEQNMPHVS---DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
           E  +   A  +   +P V     R  P   +     K +E  NYE++  +         L
Sbjct: 293 E--EKAGATNIAAGVPGVQTNMGRTAPGAGTTGGGSKSDETLNYEVSRTTARIIEPVGSL 350

Query: 355 ERLSIAVVVNKGRLTEVLGRSAD------QGKIDSYLAEINKIVSAATGINSRRGDTITI 408
            ++S+A++V+ G+        A       Q +    L +I  +V ++ G N+ RGD +T+
Sbjct: 351 TKVSVAILVD-GKYEAPAAAKAGAAKAKYQPRTPDELQKIESLVKSSVGFNAERGDQVTV 409

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
            ++ F E    + G+ + ++ +  +    T++  L+   G   + F  +  L R+
Sbjct: 410 ANIPFQETG--DMGSAEDAWWN--APIVMTLLKNLLIAGGFFAIIFFVIKPLMRM 460


>gi|170751440|ref|YP_001757700.1| flagellar MS-ring protein [Methylobacterium radiotolerans JCM 2831]
 gi|170657962|gb|ACB27017.1| flagellar M-ring protein FliF [Methylobacterium radiotolerans JCM
           2831]
          Length = 525

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 145/542 (26%), Positives = 255/542 (47%), Gaps = 30/542 (5%)

Query: 25  LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI-SDNGSSI 83
           +A+V L  I  F      V+ P    L+  L + D   +   L    I +    D G +I
Sbjct: 1   MAAVTLTLIGFFAFIILRVSRPDMGVLFSDLSMQDSASVVRELDSRGIRYETRGDAGQTI 60

Query: 84  SVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTI 143
             P   + K R+ LA +GLP+     GYE+FDK ++F  T+F+Q +  +RALEGE+AR+I
Sbjct: 61  LAPRPDLAKLRMDLAGKGLPTQG-GVGYEIFDKGDAFSSTNFVQNVNHLRALEGELARSI 119

Query: 144 QSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLD 203
           ++I  + AARVH+V+P+   F +    P+A+++++ +         AIRHLVA+AV  L 
Sbjct: 120 RAIGRVQAARVHLVLPERRLFERDRESPSAAIVLKLMGDLDAGQVRAIRHLVASAVEGLK 179

Query: 204 MGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSA 261
              ++++D  G+LL   A +   ++         A++  +   I   +A  +G    R  
Sbjct: 180 PERISIVDERGRLLADGARDAATDVASGFEDRQVALERRLRGQIEDVVAGIVGPGRARVQ 239

Query: 262 VVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV-SDRKV 320
           V AEL+++  + R   +DP+S+V RS +   ++  + T   E  V+V   +P      K 
Sbjct: 240 VNAELDLNRVESRSETFDPESRVVRSAQTRTES--AVTGNAEGQVSVGNELPGANGGDKA 297

Query: 321 PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380
           P P+  + T+K EE +NYEI+  +     +  +++RLS+AVV++        G+     +
Sbjct: 298 PTPK--DATNKNEETTNYEISRVTKTEIAEGGRIKRLSVAVVLDGVYAAAPDGKQTYSPR 355

Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440
             + +  I  +V  A G +  RGD I + ++ F E       T       +L+     V+
Sbjct: 356 TPAEIERITALVRGAVGFDKARGDQIEVVNLRFAEAPSVPQFTEPTLIESLLAPTKDDVL 415

Query: 441 NALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVT-TGL-MPNDN 498
                 V  LL   + L  +R L             + +L+P P + A+T +GL +P D 
Sbjct: 416 RMAELAVLALLTLIVLLTVVRPLV------------RQVLAPVPEAPALTASGLAIPGDA 463

Query: 499 IALDSSNQDIFSHSRNLQS-------RINSYVSKQSDLRLLHMIEINEERFAKILRKWAR 551
             +      +    R+  +       +IN  V  ++  R++ M+  +     ++LR W +
Sbjct: 464 AVVAGPGGTVTVIDRDSPTARLMEFAKINGQVQAETVQRVVDMVRASPSETVEVLRTWIQ 523

Query: 552 SE 553
            E
Sbjct: 524 EE 525


>gi|329849956|ref|ZP_08264802.1| flagellar M-ring protein FliF [Asticcacaulis biprosthecum C19]
 gi|328841867|gb|EGF91437.1| flagellar M-ring protein FliF [Asticcacaulis biprosthecum C19]
          Length = 554

 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 155/531 (29%), Positives = 248/531 (46%), Gaps = 57/531 (10%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110
           LY  L++ + + I+ ALS+  I +    +GS+I V    V +AR+ LA++GLP+ +S  G
Sbjct: 45  LYSNLDLKEASEITTALSQGGIKYEAKGDGSTIMVNRDQVAEARMMLASKGLPTQAS-VG 103

Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170
           YE+FD   + G T  +Q I   RALEGE+ARTI+++ GI +ARVH+VMP    F     +
Sbjct: 104 YEIFDDAPALGQTEAVQNINNQRALEGELARTIRTLRGISSARVHLVMPKRELFEDAAGQ 163

Query: 171 PTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK 229
           PTASV++     S+   +  AIR++VA AVPNL   +VT++D    LL A     + +G 
Sbjct: 164 PTASVVLGLSGGSLSSESVAAIRNVVATAVPNLKADNVTIVDDRNHLLAAGGDSDSAMGV 223

Query: 230 SLSIVQAIQHEIEMNINKA----LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVE 285
           + S   A + EIE ++ K     +   +G    R  V AE++       ++ Y+PD +V 
Sbjct: 224 AGS---ARKSEIEDSVRKRVMEIVEGVVGPGAARVMVTAEIDQTATTREQVEYNPDGQVV 280

Query: 286 RSIRLSKDAQRSETSQPESA--VTVEQNMPHVSDRKVP-LPRSLENTDKKEEQSNYEINT 342
           RS   S ++    T+ P SA   T   N+P    ++ P L  S  ++ +  E +N+EI+T
Sbjct: 281 RST--STNSGTETTADPNSAGQTTATANIPGT--QQAPNLSTSGNSSQQDSEVTNFEIST 336

Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY-------LAEINKIVSAA 395
                     ++++L++AVVV+      V   SAD     +Y       +  I ++V AA
Sbjct: 337 TKTTEVKAPGEIKKLAVAVVVDG-----VETPSADGKAPPAYAPRSAEDMQRIQELVQAA 391

Query: 396 TGINSRRGDTITITSMDFLENQLFNSGT-VQVSFMDILSRHFATVINALVFLVGTLLVTF 454
            G +  RGD + ++++ F     F +GT  +    D         I   V  +  LLV F
Sbjct: 392 VGYDQTRGDQVRVSNIRFSRGD-FAAGTDAKPPLFDFDKNDIMRAIEVAVLFIVALLVIF 450

Query: 455 LGLHALRR------------LHNIDDAKKGEVGGKSILSPPPISSA----VTTGLMPNDN 498
           L    L +            L   +   +  + G ++  P     A      TGL+P   
Sbjct: 451 LIARPLLKFINGGGAAGGNFLGTANGGSQAALAGAAVTGPSISYQAADNIAATGLVPTQE 510

Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549
                         R   +RI   V   S  ++   ++ + E    ILR W
Sbjct: 511 -----------QEQRIDIARIEGQVKASSVKKVSEFVDRHPEESVSILRSW 550


>gi|220932525|ref|YP_002509433.1| flagellar M-ring protein FliF [Halothermothrix orenii H 168]
 gi|219993835|gb|ACL70438.1| flagellar M-ring protein FliF [Halothermothrix orenii H 168]
          Length = 519

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 134/424 (31%), Positives = 211/424 (49%), Gaps = 34/424 (8%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           D + QF +  ++L +   +++ S + V ++  +      +SP Y  L+  L   D + I 
Sbjct: 7   DYIEQFKELWSNLNKRAKVVIISGVGVDLLTLILIIAMGSSPDYQPLFSNLNPRDADAII 66

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L E  I +R++DNG +I VPS  V K R+ +A +GLPS     G+E+F++ N FG T 
Sbjct: 67  EKLDEQGIPYRLTDNGQTILVPSQHVYKTRLDMAGEGLPSQGV-VGFEIFNQSN-FGTTD 124

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-----A 179
           F +++   RAL GE++R+IQ++  I  A+V I  P    F +      ASV+++      
Sbjct: 125 FERKVNFYRALGGELSRSIQAMEAIEYAKVQITAPKESLFIEEEQPAEASVLLKFVPGHK 184

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ-AIQ 238
           ++P   K   AI +LVA++V  LD   VT++D++G LL+ N  +++     L++ Q  IQ
Sbjct: 185 LSPDQVK---AISNLVASSVQGLDPDKVTIVDTSGNLLSRN-TDKDFYNSQLTMNQFEIQ 240

Query: 239 HEIEMNINKALAAF----LGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLS 291
            +   ++   L AF    LG DNF   V A LN D +Q+    Y P   D  + RS +  
Sbjct: 241 RKFAESLENDLRAFLFKVLGPDNFTVQVKAWLNFDKRQVESKTYSPVVGDEGIVRSQQEH 300

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           +++   E            N+P    + V    S    +  +  +NYEIN K     +  
Sbjct: 301 EESYEGENPVATGVPGTTSNIPQY--QSVEEENSGGTYESSDVITNYEINEKIEKHVYSP 358

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
             +ERLS+AV+VN       L R          L +I   V AA G +  RGD +T+TSM
Sbjct: 359 GSVERLSVAVIVNSS-----LERDE--------LQKIRNAVQAAIGYDPERGDMVTVTSM 405

Query: 412 DFLE 415
           DF E
Sbjct: 406 DFDE 409


>gi|189426353|ref|YP_001953530.1| flagellar M-ring protein FliF [Geobacter lovleyi SZ]
 gi|189422612|gb|ACD97010.1| flagellar M-ring protein FliF [Geobacter lovleyi SZ]
          Length = 530

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 138/466 (29%), Positives = 221/466 (47%), Gaps = 31/466 (6%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           +L   + L++  V+L  ++ F       N   Y  L+  L   D   I   L EA   ++
Sbjct: 14  ALAPGKRLLVGGVVLACLLSFALLIMLANRTDYRPLFTNLASEDAGEIVKKLKEAKTPYQ 73

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135
           I+ +G  I VP+  V + R+ LA++GLP      G+E+FD+ N FG+T F+Q++   RAL
Sbjct: 74  ITPDGKGIMVPADKVYELRLSLASEGLPQGG-GVGFEIFDRKN-FGMTEFVQKLNYQRAL 131

Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRH 193
           +GE+ARTI  ISG+  ARVH+V+P+   F++    PTASV+++       +  E   + H
Sbjct: 132 QGELARTITQISGVEQARVHLVIPEKTLFKEAEKPPTASVVLKMKGNKNLRDNEVQGVVH 191

Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKALAA 251
           LV++++  ++  +VTVLDS GK+L+   N M  +   K+ S +Q  Q   E N+ + L  
Sbjct: 192 LVSSSIEGMNADNVTVLDSRGKILSKGGNGMA-DASAKATSAMQETQRGYERNVEERLQT 250

Query: 252 FLG--VDNFRSAVVAELNMDTQQIREI--VYDPDSKVERSIRLSKDAQRSETSQPESAVT 307
            L   V   +S        D +Q+  +   +DP++   RS       QRSE     SAV+
Sbjct: 251 LLDRVVGGGKSVARVSATFDFKQVERVEEKFDPETIAVRS------EQRSEEKAGGSAVS 304

Query: 308 VEQNMPHVS---DRKVPLPRSLENTDKKEEQS-NYEINTKSIATTHDNYKLERLSIAVVV 363
               +P V     R  P          K +++ NYE++  +  T      L ++S+A++V
Sbjct: 305 T--GVPGVQTNLGRTAPGAGGAAGGGSKNDETLNYEVSRSTSRTVEPVGTLSKVSVAILV 362

Query: 364 NKGRLTEVLGRSADQGKID------SYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           +    T   G+    GK          L +I  +V  A G N  RGD I+I ++ F +  
Sbjct: 363 DGKYETGAPGKDGAAGKAKYVPRSPDELQKIEALVKGAVGFNQERGDQISIQNIAFQDAG 422

Query: 418 LFNSGTVQVSFM--DILSRHFATVINALVFLVGTLLVTFLGLHALR 461
                T    +         F  ++ AL FL   L V    L+ LR
Sbjct: 423 EAAGSTESAKWWMNPFFLTLFKNLMIALGFLALMLFVVKPMLNTLR 468


>gi|172062015|ref|YP_001809667.1| flagellar MS-ring protein [Burkholderia ambifaria MC40-6]
 gi|171994532|gb|ACB65451.1| flagellar M-ring protein FliF [Burkholderia ambifaria MC40-6]
          Length = 587

 Score =  170 bits (431), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 114/386 (29%), Positives = 192/386 (49%), Gaps = 16/386 (4%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VPS+ V + R+ LAA 
Sbjct: 79  LWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSNQVHETRLKLAAL 138

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   S  G+EL D    FG++ F +++   RALEGE+ RTI+SI+ +  ARVH+ +P 
Sbjct: 139 GLPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLAIPK 196

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +      V      +AI  +V++ VP++   +VT++D  G LLT
Sbjct: 197 PSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGNLLT 256

Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
                  +    L  VQ ++H  +  I+  LA   G  N RS V A+++    +     Y
Sbjct: 257 QTASASGLDASQLKYVQQVEHNTQKRIDAILAPIFGTGNARSQVSADIDFSKLEQTSESY 316

Query: 279 DPDSKVER-SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLP----------RSLE 327
            P+   ++ +IR  + +  +E +Q   A  V   + +   +    P          +S  
Sbjct: 317 GPNGTPQQAAIRSQQTSSATELAQ-GGASGVPGALSNTPPQPASAPIVAGNGQNGAQSTP 375

Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE 387
            +D+K++ +NYE++            ++RLS+AVVVN   + +  G    Q      LA+
Sbjct: 376 VSDRKDQTTNYELDKTIRHVEQPMGNVKRLSVAVVVNYQPVADAKGHVTMQPLPPPKLAQ 435

Query: 388 INKIVSAATGINSRRGDTITITSMDF 413
           + ++V  A G + +RGD++ + +  F
Sbjct: 436 VEQLVKDAMGYDEKRGDSVNVVNSAF 461


>gi|254418232|ref|ZP_05031956.1| flagellar M-ring protein FliF [Brevundimonas sp. BAL3]
 gi|196184409|gb|EDX79385.1| flagellar M-ring protein FliF [Brevundimonas sp. BAL3]
          Length = 545

 Score =  170 bits (431), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 152/543 (27%), Positives = 250/543 (46%), Gaps = 48/543 (8%)

Query: 27  SVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVP 86
           + +LV +ML M       +P    LY  L++ +   I+ AL +A I +    +GS++ V 
Sbjct: 27  TAVLVAVMLRMG-----QAPDA-LLYSNLDLREAGEITTALQQAGIKYTSKGDGSTVMVN 80

Query: 87  SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146
              VG AR+ +A +GL +S S  GYE+FD  +  G T F Q++   RAL+GE++RTI S+
Sbjct: 81  RDDVGTARMLIAGKGLVTSGS-VGYEIFDNQSVLGQTEFQQQLNEQRALQGELSRTIMSM 139

Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTASVMI----RAINPSVYKSAEAIRHLVAAAVPNL 202
            GI AARVHI MP    F      PTA+V++    R + P   +   AIR+LVA++VPNL
Sbjct: 140 RGITAARVHITMPRREMFTAAAGDPTAAVLVGLGGRDLTPDQVR---AIRNLVASSVPNL 196

Query: 203 DMGDVTVLDSTGKLLTANEMERNILGKSLSIVQA-IQHEIEMNINKALAAFLGVDNFRSA 261
               VTV D   + L A   +      S +  +   + +++  I   +   +G+   R  
Sbjct: 197 KPDRVTVADQNNRTLAAGSDDGTFSSASAAETKGNTEAQLQSRIKDIVEGVVGIGAARVQ 256

Query: 262 VVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVP 321
           V A+++      +E  +DPD +V RS   +       T Q +  VT   N+P       P
Sbjct: 257 VTADIDQSRSTTQEQKFDPDGQVVRSTTANGSQSSDTTGQNDGGVTAANNIPG----GAP 312

Query: 322 LPRSLENTDKKE--EQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL---GRSA 376
              +       E  E +NYEI+  +  TT +  ++++L++AV V+ G+ T      G   
Sbjct: 313 PATTPAGATSAENAETTNYEISNTTTTTTKEPGEVKKLAVAVAVD-GKWTPAADGKGEPT 371

Query: 377 DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG-TVQVSFMDILSRH 435
              +    +A+I  +V+AA GI+  RGD I + ++ F  +     G   + S +D     
Sbjct: 372 YAPRTAEEIAQIKSLVAAAAGIDEARGDKIEVINVRFNHDTGIAGGLEGKSSLLDFSRTD 431

Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495
              +I   +  V  LL+ F  L  L +                +    P+++ VTT ++ 
Sbjct: 432 VMRLIELGILAVVALLLIFFVLRPLLKTAGGAAPGAVAAAPAGL----PVAT-VTTTVIG 486

Query: 496 NDN----IALDSSNQ-----DIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546
            D     + L + N+     DI        +RI   V   S  ++   ++ + +  A IL
Sbjct: 487 ADGQPQLVQLPAPNEMDQKIDI--------ARIEGQVKASSVKKVADFVQAHPDEAAGIL 538

Query: 547 RKW 549
           R W
Sbjct: 539 RNW 541


>gi|167835057|ref|ZP_02461940.1| flagellar MS-ring protein [Burkholderia thailandensis MSMB43]
          Length = 486

 Score =  170 bits (430), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 115/391 (29%), Positives = 191/391 (48%), Gaps = 27/391 (6%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 46  WSRAPDYRVLYSNLSDRDGGAIITALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 105

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++SI+ + AARVH+ +P  
Sbjct: 106 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 163

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++      V    +  A+  +V+++VP++   +VT++D  G LLT 
Sbjct: 164 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 223

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N R+ V A+++    +     Y 
Sbjct: 224 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARAQVSADVDFSKIEQTSESYG 283

Query: 280 PDSKVERS-IRLSKDAQRSE----------------TSQPESAVTVEQNMPHVSDRKVPL 322
           P+   ++S IR  + +  +E                  QP SA  V  N         P+
Sbjct: 284 PNGTPQQSAIRSQQTSTATELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 343

Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382
                 +D+K+  +NYE++            ++RLS+AVVVN     +  GR   Q    
Sbjct: 344 ------SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPAADAKGRVTMQPLAA 397

Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413
             LA++ ++V  A G + +RGD++ + +  F
Sbjct: 398 DKLAQVQQLVKDAMGYDEKRGDSVNVVNSAF 428


>gi|221215779|ref|ZP_03588738.1| flagellar M-ring protein FliF [Burkholderia multivorans CGD1]
 gi|221164315|gb|EED96802.1| flagellar M-ring protein FliF [Burkholderia multivorans CGD1]
          Length = 587

 Score =  169 bits (429), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 114/390 (29%), Positives = 195/390 (50%), Gaps = 24/390 (6%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA 
Sbjct: 79  LWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPAAQVHETRLKLAAL 138

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D    FG++ F +++   RALEGE+ RTI+SI+ +  ARVH+ +P 
Sbjct: 139 GLPKGGA-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLAIPK 196

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +      V      +AI  +V++ VP++   +VT++D  G LLT
Sbjct: 197 PSVFVRDREAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGNLLT 256

Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
                  +    L  VQ ++   +  I+  LA   G  N RS V A+++    +     Y
Sbjct: 257 QPASATGLDASQLKYVQQVERNTQKRIDAILAPIFGAGNARSQVSADIDFSKLEQTSESY 316

Query: 279 DPD-SKVERSIRLSKDAQRSETSQ--------------PESAVTVEQNMPHVSDRKVPLP 323
            P+ S  + +IR  + +  +E +Q              P+ A     + P V+      P
Sbjct: 317 GPNGSPQQAAIRSQQTSTSTELAQSGASGVPGALSNTPPQPA-----SAPIVAGNGANAP 371

Query: 324 RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS 383
           ++   +D+K++ +NYE++            ++RLS+AVVVN   + +  G    Q    +
Sbjct: 372 QTTPVSDRKDQTTNYELDKTIRHVEQPMGTVKRLSVAVVVNYQPVADAKGHVTMQPLPPA 431

Query: 384 YLAEINKIVSAATGINSRRGDTITITSMDF 413
            LA+I ++V  A G +++RGD++ + +  F
Sbjct: 432 KLAQIEQLVKDAMGYDAKRGDSVNVVNSAF 461


>gi|254445735|ref|ZP_05059211.1| flagellar M-ring protein FliF [Verrucomicrobiae bacterium DG1235]
 gi|198260043|gb|EDY84351.1| flagellar M-ring protein FliF [Verrucomicrobiae bacterium DG1235]
          Length = 525

 Score =  169 bits (429), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 141/471 (29%), Positives = 235/471 (49%), Gaps = 25/471 (5%)

Query: 9   QFFKSGTSLG-RTRI-LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           QF +   SLG   RI LILAS ++V  M+ M    +   P    LY KL   +  +I   
Sbjct: 4   QFKEIWQSLGANQRISLILASGLVVLAMIGMM--IWAAQPDMQLLYGKLSAEEAGKIVAK 61

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L +  + F     G+SI V +S V + R+ LA +G+P+  S  G+ELFD+  SFG++ F+
Sbjct: 62  LEQKGVAFETGSGGNSIYVEASQVHRIRMELATEGIPAGGSGPGFELFDE-GSFGISDFV 120

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPD--MGSFRKIGARPTASVMIRAINPSV 184
           Q    +RA++GE+ARTI    G+ +ARV +VMP+  + + R+   RPTASV +     S 
Sbjct: 121 QRTNFLRAVQGELARTISQFDGVESARVMVVMPENRLLASREGQDRPTASVFVDGGGLST 180

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS-----IVQAIQH 239
             +  +IRHLVA A+  L + DV V+DS G +L+  E+  + +G  +S       +++++
Sbjct: 181 -GTVNSIRHLVANAIQRLSINDVVVVDSMGTVLS-EELRSDGIGSGISNDVIKYRKSLEN 238

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ--RS 297
                +   L   LG +     V  ++   + Q  E  +DP+S+V RS    +D+Q  R 
Sbjct: 239 YFTGKVQSMLDRVLGPNQSEVRVAVDIETASVQTTEKTFDPESQVARSTVSDEDSQVERE 298

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSL-ENTDK-KEEQSNYEINTKSIATTHDNYKLE 355
            + +   A  V  N P           +L E  DK K    N+EIN + +++  +   ++
Sbjct: 299 TSGEGAGATGVSSNTPAAGGAGQTAFSTLKEREDKNKTRTENFEINERIVSSVQNPGSIK 358

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT----ITITSM 411
           RL+ +++V K R+ +V G+     +    L E++ IV  A GI    G T    +T+  M
Sbjct: 359 RLTASLLVAK-RMEDVRGQMNFVDRTPEQLEELSDIVVTALGIQLAPGQTAADFVTVKEM 417

Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
            F  +   N G + +     + R+     N +  ++G  ++ F  +  L+R
Sbjct: 418 AFAVDPFENHGEL-LKEDATIQRYIELGKNGIGAVLGIGVIIFF-MQMLKR 466


>gi|320354317|ref|YP_004195656.1| flagellar M-ring protein FliF [Desulfobulbus propionicus DSM 2032]
 gi|320122819|gb|ADW18365.1| flagellar M-ring protein FliF [Desulfobulbus propionicus DSM 2032]
          Length = 550

 Score =  169 bits (429), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 135/455 (29%), Positives = 220/455 (48%), Gaps = 25/455 (5%)

Query: 21  RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80
           R + LA+V  + + LF        +  Y  LY  L  SD + +   L   NI +++++NG
Sbjct: 30  RKIALAAVTAITLGLFAFIIVQARTADYQLLYGNLAESDASSVVEWLKGQNIPYKLANNG 89

Query: 81  SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140
            +I +P+  V + R+ LA+ GLP      G+E+FDK  SF LT F+Q++   RAL+GE+A
Sbjct: 90  HNILIPAKDVYETRLSLASLGLPQGG-GVGFEIFDK-QSFALTDFVQKVNYSRALQGELA 147

Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAA 198
           RTI S+  +  ARVH+ +P+   F+      TASV+I+         A  E + HLV+++
Sbjct: 148 RTIASLGPVETARVHLALPEKRLFKDQQKPATASVIIKLAPGKRLSEAQIEGVVHLVSSS 207

Query: 199 VPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255
           +  LD G VTV+D  G +L+      +  N+    L     ++  +E      L   LG 
Sbjct: 208 IEGLDPGQVTVIDQNGNVLSRIGEKGLSGNLSPDMLEFQMQVEQRLEDRAQALLDKSLGA 267

Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ--PESAVTVEQNMP 313
            N    V A L+    +  E  +DP+  V RS +LS++   SE +   P     +E N  
Sbjct: 268 KNAMVRVSATLDFAQTEKTEETFDPEEPVIRSEQLSEEKSGSEITGGVPGVQSNLEGNTA 327

Query: 314 HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373
             +    P  RS   T       NYEI+     TT     + +LS++V+V       V G
Sbjct: 328 QTAGATPPSSRSQRTT-------NYEISKVVSKTTQPVGTISKLSVSVLVAD---KVVPG 377

Query: 374 RSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFM 429
           +  +  K     ++ L  +  +V++A GI++ RGD I +TSM FLE+     G  +    
Sbjct: 378 KDKEPAKTEPRSETELKTLQTMVASALGIDTARGDKIEVTSMPFLESA--EDGGQEGMAA 435

Query: 430 DILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
           ++L ++   +   L+ L   L+  F+    ++ LH
Sbjct: 436 NLLYQYLPFIRYGLLILGAVLIYLFMIRPLMKTLH 470


>gi|259417522|ref|ZP_05741441.1| flagellar MS-ring protein [Silicibacter sp. TrichCH4B]
 gi|259346428|gb|EEW58242.1| flagellar MS-ring protein [Silicibacter sp. TrichCH4B]
          Length = 571

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 167/564 (29%), Positives = 252/564 (44%), Gaps = 45/564 (7%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           R R++ + + + V I  F       N P    LY  LE S    +  AL ++ +D+ +  
Sbjct: 27  RKRMMAIGATLAV-IFTFFLMSMVANKPSMQLLYAGLESSSAGDVVSALEQSGVDYEV-- 83

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
            G SI VPS+   + R+ LA+QGLP++    GYEL D ++ FG TS M +    RA EGE
Sbjct: 84  RGGSIYVPSNKRDELRMTLASQGLPANGGK-GYELLDSLSGFGTTSQMFDAAYWRAKEGE 142

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN-PSVYKSAEAIRHLVAA 197
           +ARTI +   +  ARVHI       F++    PTASV +  +  P     A AIR LVA+
Sbjct: 143 LARTIVANPHVSQARVHIANTGSNPFQRT-IEPTASVSVTPMGTPITPAQANAIRFLVAS 201

Query: 198 AVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDN 257
           AV  L + +V V+D+ G L+ + E        +    Q ++  +     + + A +G  N
Sbjct: 202 AVAGLAVDNVAVIDANGALIGSPEAAAAAGAGTDDRSQTLRERVL----RLVEARVGHGN 257

Query: 258 FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA-VTVEQNMPHVS 316
               +  E   DT+ IRE + DP S+V  S  +    +R+++SQ ++  VTV  N+P   
Sbjct: 258 AVVEISVETVTDTESIREKLVDPQSRVAISTDVE---ERTDSSQNQAGEVTVASNIPDGD 314

Query: 317 DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA 376
                  R+  NT+   E+ NYEI+            ++RL++AV++N        G++ 
Sbjct: 315 AGNGEGSRA--NTNATRERVNYEISETEKEIVRGPGAIKRLTVAVLINGVTTPTADGQAT 372

Query: 377 DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHF 436
            + + D  L  + +++SAA G ++ RGD IT+ SMD L N       V  S  D L    
Sbjct: 373 FEPRPDEELDALRELISAAVGFDAERGDVITLKSMD-LPNVEPEGTAVTSSMFDNLYFDV 431

Query: 437 ATVINALVFLVGTLLVTFLGLHALRRLHNIDDA-------KKGEVGGKSILSPPPISSAV 489
            ++I      V  L+   LGL  +R +   + A         G   G   L   P     
Sbjct: 432 MSIIQMAALAVVALI---LGLFVVRPILAGNGASVQALPSPDGMAAGG--LPELPNMGGG 486

Query: 490 TTGLMPN----DNIAL----DSSNQDIFSHSRNLQSRINSY--------VSKQSDLRLLH 533
             G M N     NIAL    DS     F     L    +          +S     RL  
Sbjct: 487 DAGFMTNPDLGSNIALDGEIDSGGDGQFQPLGGLPGMGDGLATFGGGGGMSDDPVDRLRS 546

Query: 534 MIEINEERFAKILRKWARSEIEDR 557
           MI   +E   +ILR W     E+R
Sbjct: 547 MIGERQEETVQILRGWLEENNEER 570


>gi|238028887|ref|YP_002913118.1| flagellar MS-ring protein [Burkholderia glumae BGR1]
 gi|237878081|gb|ACR30414.1| Flagellar M-ring protein FliF [Burkholderia glumae BGR1]
          Length = 599

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 119/389 (30%), Positives = 194/389 (49%), Gaps = 24/389 (6%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +ANI ++ +D G +I VP+S V + R+ LAA G
Sbjct: 84  WSRAPDYRVLYSNLSDRDGGAIITALQQANIPYQFADAGGAILVPASQVHETRLRLAAMG 143

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RTI SI+ + +ARVH+ +P  
Sbjct: 144 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELERTIASINAVRSARVHLAIPKP 201

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV +      V    +  AI  +VA+ VP++   +VT++D  G LL+ 
Sbjct: 202 SVFVRDREAPSASVFVDLYPGRVLDDGQVLAITRMVASGVPDMPAKNVTIVDQDGNLLSQ 261

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ ++H  +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 262 QPSSSGLDANQLKYVQQVEHNTQKRIDAILAPMFGAGNTRSQVSADIDFTRSEQTSESYA 321

Query: 280 PD-SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT--------- 329
           P+ ++ + +IR    +Q++ +S  ESA +    +P       P P S   T         
Sbjct: 322 PNGTQQQAAIR----SQQTSSSV-ESAQSGAGGVPGALSNTPPQPASAPITGASGAAGTP 376

Query: 330 -----DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY 384
                D+K+  +NYE++     T      ++RLS+AVVVN   + +  G    Q      
Sbjct: 377 PTPISDRKDSTTNYELDKTVRHTEAPTGGIKRLSVAVVVNNLPVVDAKGHVTMQPLTADK 436

Query: 385 LAEINKIVSAATGINSRRGDTITITSMDF 413
           L ++ ++V  A G +++RGD++ + +  F
Sbjct: 437 LKQVEQLVKDAMGYDAKRGDSVNVVNSVF 465


>gi|221201939|ref|ZP_03574976.1| flagellar M-ring protein FliF [Burkholderia multivorans CGD2M]
 gi|221207554|ref|ZP_03580562.1| flagellar M-ring protein FliF [Burkholderia multivorans CGD2]
 gi|221172400|gb|EEE04839.1| flagellar M-ring protein FliF [Burkholderia multivorans CGD2]
 gi|221178359|gb|EEE10769.1| flagellar M-ring protein FliF [Burkholderia multivorans CGD2M]
          Length = 587

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 114/390 (29%), Positives = 195/390 (50%), Gaps = 24/390 (6%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA 
Sbjct: 79  LWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPAAQVHETRLKLAAL 138

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D    FG++ F +++   RALEGE+ RTI+SI+ +  ARVH+ +P 
Sbjct: 139 GLPKGGA-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLAIPK 196

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +      V      +AI  +V++ VP++   +VT++D  G LLT
Sbjct: 197 PSVFVRDREAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGNLLT 256

Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
                  +    L  VQ ++   +  I+  LA   G  N RS V A+++    +     Y
Sbjct: 257 QPASATGLDASQLKYVQQVERNTQKRIDAILAPIFGAGNARSQVSADIDFSKLEQTSESY 316

Query: 279 DPD-SKVERSIRLSKDAQRSETSQ--------------PESAVTVEQNMPHVSDRKVPLP 323
            P+ S  + +IR  + +  +E +Q              P+ A     + P V+      P
Sbjct: 317 GPNGSPQQAAIRSQQTSTSTELAQSGASGVPGALSNTPPQPA-----SAPIVAGNGANAP 371

Query: 324 RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS 383
           ++   +D+K++ +NYE++            ++RLS+AVVVN   + +  G    Q    +
Sbjct: 372 QTTPVSDRKDQTTNYELDKTIRHVEQPMGTVKRLSVAVVVNYQPVADAKGHVTMQPLPPA 431

Query: 384 YLAEINKIVSAATGINSRRGDTITITSMDF 413
            LA+I ++V  A G +++RGD++ + +  F
Sbjct: 432 KLAQIEQLVKDAMGYDAKRGDSVNVMNSAF 461


>gi|167588531|ref|ZP_02380919.1| flagellar MS-ring protein [Burkholderia ubonensis Bu]
          Length = 487

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 114/390 (29%), Positives = 195/390 (50%), Gaps = 24/390 (6%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA 
Sbjct: 52  LWTRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAL 111

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   S  G+EL D    FG++ F ++I   RALEGE+ RTI+S++ + AARVH+ +P 
Sbjct: 112 GLPKGGS-VGFELMDN-QKFGISQFAEQINYQRALEGELQRTIESVNAVKAARVHLAIPK 169

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +      V    +  AI  +V++ VP++   +VT++D  G LLT
Sbjct: 170 PSVFVRDKEAPSASVFVDLYPGRVLDEGQVLAITRMVSSGVPDMPAKNVTIVDQDGNLLT 229

Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
                  +    L  VQ ++   +  I+  LA   G  N RS V A+++    +     Y
Sbjct: 230 QPASATGLDASQLKYVQQVERNTQKRIDAILAPIFGTGNARSQVSADIDFSRLEQTSESY 289

Query: 279 DPDSKVERS-IRLSKDAQRSETSQ--------------PESAVTVEQNMPHVSDRKVPLP 323
            P+   +++ IR  + +  +E +Q              P+ A     + P V+      P
Sbjct: 290 GPNGTPQQTAIRSQQTSTATELAQGGASGVPGALSNTPPQPA-----SAPIVAGNGQNGP 344

Query: 324 RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS 383
           ++   +D+K+  +NYE++            ++RLS+AVVVN   + +  G    Q    +
Sbjct: 345 QATPVSDRKDSTTNYELDKTIRHVEQPMGSVKRLSVAVVVNYQPVADSKGHVTMQPLPPA 404

Query: 384 YLAEINKIVSAATGINSRRGDTITITSMDF 413
            LA++ ++V  A G +++RGD++ + +  F
Sbjct: 405 KLAQVEQLVKDAMGYDAKRGDSVNVVNSTF 434


>gi|161526230|ref|YP_001581242.1| flagellar MS-ring protein [Burkholderia multivorans ATCC 17616]
 gi|189349056|ref|YP_001944684.1| flagellar MS-ring protein [Burkholderia multivorans ATCC 17616]
 gi|160343659|gb|ABX16745.1| flagellar M-ring protein FliF [Burkholderia multivorans ATCC 17616]
 gi|189333078|dbj|BAG42148.1| flagellar M-ring protein [Burkholderia multivorans ATCC 17616]
          Length = 587

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 114/390 (29%), Positives = 195/390 (50%), Gaps = 24/390 (6%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA 
Sbjct: 79  LWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPAAQVHETRLKLAAL 138

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D    FG++ F +++   RALEGE+ RTI+SI+ +  ARVH+ +P 
Sbjct: 139 GLPKGGA-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLAIPK 196

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +      V      +AI  +V++ VP++   +VT++D  G LLT
Sbjct: 197 PSVFVRDREAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGNLLT 256

Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
                  +    L  VQ ++   +  I+  LA   G  N RS V A+++    +     Y
Sbjct: 257 QPASATGLDASQLKYVQQVERNTQKRIDAILAPIFGAGNARSQVSADIDFSKLEQTSESY 316

Query: 279 DPD-SKVERSIRLSKDAQRSETSQ--------------PESAVTVEQNMPHVSDRKVPLP 323
            P+ S  + +IR  + +  +E +Q              P+ A     + P V+      P
Sbjct: 317 GPNGSPQQAAIRSQQTSTSTELAQSGASGVPGALSNTPPQPA-----SAPIVAGNGANAP 371

Query: 324 RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS 383
           ++   +D+K++ +NYE++            ++RLS+AVVVN   + +  G    Q    +
Sbjct: 372 QTTPVSDRKDQTTNYELDKTIRHVEQPMGTVKRLSVAVVVNYQPVADAKGHVTMQPLPPA 431

Query: 384 YLAEINKIVSAATGINSRRGDTITITSMDF 413
            LA+I ++V  A G +++RGD++ + +  F
Sbjct: 432 KLAQIEQLVKDAMGYDAKRGDSVNVMNSAF 461


>gi|313895975|ref|ZP_07829529.1| flagellar M-ring protein FliF [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975400|gb|EFR40861.1| flagellar M-ring protein FliF [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 526

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 128/459 (27%), Positives = 227/459 (49%), Gaps = 33/459 (7%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           R R ++L S + +  ++F  + ++ + P    L+  +E  D   ++  L EA I + + D
Sbjct: 18  RQRYIMLGSALAILALIFGLSFWYGSKPDMVPLFTDMETKDAGEVANQLREAKISYEVQD 77

Query: 79  --NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136
             NG++I VP++ V +AR++LA QGLP    N G+E+FD  +  G+T F   +  ++AL+
Sbjct: 78  GKNGTTILVPTTNVHEARLNLATQGLPRG--NKGFEIFDD-SKLGVTEFQNRVNYLQALQ 134

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS---VYKSAEAIRH 193
           GE+ RTI+ I  +  ARVHIV+P+   ++K     TAS+M+R + PS     K  + I +
Sbjct: 135 GELTRTIEQIDAVEKARVHIVLPEDSLYKKEEKPATASIMLR-LKPSTELTKKEIKGIVN 193

Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLS---IVQAIQHEIEMNINKA 248
           L A +V  L   ++T++D TGK+L    ++ E+++  K+L+   + + +Q  IE  +   
Sbjct: 194 LAAHSVKGLTPENITIVDDTGKILNDPDDQDEKSVGVKTLTQLDMTRKVQDNIEKKVQSL 253

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQRSETSQPESA 305
           L   LG     + V  EL+ D +   +  + P   D+ + RS +   +     ++ P   
Sbjct: 254 LDQTLGEGRAVARVSVELDFDDRLTDKQTFTPVVDDAGIIRSQQDISENYTGSSTNPGGP 313

Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365
             V+ N+P   +++       E   KKE   NYEIN +          + RL++AV+VN 
Sbjct: 314 AGVQSNVPGYVEQESNANAQYE---KKESTKNYEINEERQHVIASPGSIRRLTVAVLVND 370

Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425
                       Q + +S L    + VS+A GIN  RGDTI++  + F +         +
Sbjct: 371 ---------DVTQPQQESIL----RTVSSAAGINQARGDTISVEPLPFSKEAAERRAAEE 417

Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
            +  D   R F   +  ++ ++  ++   L     +RL 
Sbjct: 418 QAEKDRQDRIFYAQVGIVLLIIALIVGGILMYRRKKRLE 456


>gi|289548426|ref|YP_003473414.1| flagellar M-ring protein FliF [Thermocrinis albus DSM 14484]
 gi|289182043|gb|ADC89287.1| flagellar M-ring protein FliF [Thermocrinis albus DSM 14484]
          Length = 496

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 129/405 (31%), Positives = 205/405 (50%), Gaps = 45/405 (11%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LIL+  +   ++  +      +S  Y  LY  L   D++ +   L +  + +++  +G S
Sbjct: 23  LILSGAVAAGLISLLLMVLLASSARYVPLYSGLSQEDMSAVLSELEKEGVPYKLGGDGRS 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           + VP   V   R+ LAA+G+PS     GYE+FDK N F ++ F  ++   RA+EGE+A+T
Sbjct: 83  VLVPEDKVRDIRLKLAAKGIPSKGV-VGYEIFDKSN-FAVSDFQNQVNFKRAVEGELAKT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLVAAAV 199
           I  I G+  A+V+I MP    F +   +PTASV++R + P    S E   AIR+LVA +V
Sbjct: 141 IMRIQGVEEAKVNIGMPQRSIFVREEEQPTASVLVR-LKPGYELSPEQVKAIRNLVALSV 199

Query: 200 PNLDMGDVTVLDSTGKLLTA---NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVD 256
           P LD  +V V+D  G+ LT+    EM  ++  + L I +  + ++E  + K L   LGV 
Sbjct: 200 PRLDPKNVVVIDDRGRDLTSLLGEEM--DLTERELRIKREYEEQVEKKLQKILEEALGVG 257

Query: 257 NFRSAVVAELNMDTQQIREIVYDPD--------SKVERSIRLSKDAQRSETSQPESAVTV 308
           N +  V A++++  ++ +E +YDPD         K ER +  +        S    A  V
Sbjct: 258 NVKVRVSADIDLTRRESKEEIYDPDMTAVVSQQKKKERVLGGTLGGVPGTASNIPPATGV 317

Query: 309 EQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368
                 +S+R              E  +NYE++ K I T     K+ RLS+ VVVN  +L
Sbjct: 318 GAGGQTLSER-------------TETITNYEVSKKQIYTEEPLVKVRRLSVGVVVN-SQL 363

Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
             V         +DS    I ++V  A GI+ RRGDTI++ ++ F
Sbjct: 364 KNV--------NLDS----IRELVQTAAGIDQRRGDTISVVAVPF 396


>gi|292669732|ref|ZP_06603158.1| flagellar M-ring protein FliF [Selenomonas noxia ATCC 43541]
 gi|292648529|gb|EFF66501.1| flagellar M-ring protein FliF [Selenomonas noxia ATCC 43541]
          Length = 526

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 120/408 (29%), Positives = 208/408 (50%), Gaps = 33/408 (8%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           R R ++L S + + +++F  + ++ + P    L+  +E  D   ++  L E+ I + I +
Sbjct: 18  RQRYIMLGSALAILVLIFGLSFWYGSKPDMVPLFTDMETKDAGEVAKQLRESKISYEIQE 77

Query: 79  N--GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136
           N  G++I VP++ V +AR++LA QGLP    N G+E+FD  +  G+T F   +  ++AL+
Sbjct: 78  NKSGTTILVPTTNVHEARLNLATQGLPRG--NKGFEIFDD-SKLGVTEFQNRVNYLQALQ 134

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS---VYKSAEAIRH 193
           GE+ RTI+ I  +  ARVHIV+P+   ++K     TAS+M+R + P+     K  + I +
Sbjct: 135 GELTRTIEQIEAVEKARVHIVLPEDSLYKKEEKPATASIMLR-LKPNAELTKKEIKGIVN 193

Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILG----KSLSIVQAIQHEIEMNINKA 248
           L A +V  L   ++T++D TGK+L   ++ + N +G      L + + +Q  IE  +   
Sbjct: 194 LAAHSVKGLMPENITIVDDTGKILNDPDDQDENAIGVKTLTQLDMTRKVQDNIEKKVQSL 253

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQRSETSQPESA 305
           L   LG     + V  EL+ D +      + P   D+ + RS +   ++    ++ P   
Sbjct: 254 LDQTLGEGRAFARVSVELDFDDRLTDRQTFTPVVDDAGIIRSQQDISESYVGNSTNPGGP 313

Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365
             V+ N+P   +++       E   KKE   NYEIN +          + RL++AV+VN 
Sbjct: 314 AGVQSNVPGYVEQEANANAEYE---KKESTKNYEINEERQHVIASPGSIRRLTVAVLVND 370

Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
                       Q + +S L    + VS+A GIN  RGDTI++  + F
Sbjct: 371 ---------DVTQPQQESIL----RTVSSAAGINPTRGDTISVEPLPF 405


>gi|330818622|ref|YP_004362327.1| Flagellar M-ring protein FliF [Burkholderia gladioli BSR3]
 gi|327371015|gb|AEA62371.1| Flagellar M-ring protein FliF [Burkholderia gladioli BSR3]
          Length = 599

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 114/391 (29%), Positives = 192/391 (49%), Gaps = 24/391 (6%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL ++NI ++ +D G +I VP+S+V + R+ LA+ G
Sbjct: 86  WSRAPDYKVLYSNLSDRDGGAIIAALQQSNIPYQFTDAGGAILVPASLVHETRLKLASMG 145

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RTI SI+ + AARVH+ +P  
Sbjct: 146 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELERTIASINAVRAARVHLAIPKP 203

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV +      V    +  AI  +VA+ VP++   +VT++D  G LL+ 
Sbjct: 204 SVFVREREAPSASVFVDLYPGRVLDDGQVLAITRMVASGVPDMPAKNVTIVDQDGNLLSQ 263

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
            +    +    L  VQ ++   +  I+  LA   G  N R+ V A+++    +     + 
Sbjct: 264 QQSAAGLDANQLKYVQQVERNTQKRIDAILAPMFGAGNTRAQVSADVDFSRAEQTSESFS 323

Query: 280 PD-SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT--------- 329
           P+ ++ + +IR  + +  +E SQ  +       +P       P P S   T         
Sbjct: 324 PNGTQQQAAIRSQQTSSSTEMSQSGAG-----GVPGALSNTPPQPASAPITGASGAAGTP 378

Query: 330 -----DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY 384
                D+K+  +NYE+N            ++RLS+AVVVN   + +  G    Q      
Sbjct: 379 PTPISDRKDSTTNYELNKTVSHVEQATGGIKRLSVAVVVNNLPVADAKGHVTMQPLSADK 438

Query: 385 LAEINKIVSAATGINSRRGDTITITSMDFLE 415
           L ++ ++V  A G +++RGD++ + +  F E
Sbjct: 439 LRQVEQLVKDAMGFDAKRGDSVNVVNSQFTE 469


>gi|302878299|ref|YP_003846863.1| flagellar M-ring protein FliF [Gallionella capsiferriformans ES-2]
 gi|302581088|gb|ADL55099.1| flagellar M-ring protein FliF [Gallionella capsiferriformans ES-2]
          Length = 566

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 127/408 (31%), Positives = 207/408 (50%), Gaps = 39/408 (9%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92
           I L + A  +  +P Y  LY  L   D   I  +L + NI ++ +D G ++ +P+  V +
Sbjct: 37  IALIVGAWMWGQTPDYRILYSNLSDRDGGAIIESLQQLNIPYKFADGGGALMIPADQVHE 96

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
           AR+ LA+QGLP   +  G+EL +    FG+T F +++   RALEGE+AR++QSI  + +A
Sbjct: 97  ARLKLASQGLPKGGT-VGFELMEN-QKFGITQFAEQVNYQRALEGELARSVQSIGAVASA 154

Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVL 210
           RVH+ +P    F K   +P+ASV++      +  SA+  AI HL++++VP++   +VT++
Sbjct: 155 RVHLAIPKPSVFIKEQQKPSASVVLTLHGGRLLDSAQVTAIVHLISSSVPDMSAKNVTIV 214

Query: 211 DSTGKLLTANEMERNILG---KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELN 267
           D  G LL++ + + N LG     L  VQ I+      I   L   LG +N  + V A ++
Sbjct: 215 DQDGSLLSSLQ-DSNGLGLDANQLKYVQQIEQNYIKRIEDILTPLLGANNVHAQVTANID 273

Query: 268 MD-TQQIREIVYDPD-SKVERSIRLSKDAQRSET----------------SQPESAVT-- 307
              T+Q  E  Y P+ +  + S+R     Q SET                +QP    T  
Sbjct: 274 FARTEQTAE-TYKPNQNPADSSVR---SLQNSETLNGSGLNASGVPGALSNQPPVPATAP 329

Query: 308 VEQNMPHVSDRKVPLPRSLENTDK--KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365
           +    P  +D     P +    D   KE   NYE++     T      ++RLS+AVVVN 
Sbjct: 330 IVSAPPGATD-----PANAPKIDNLHKENTINYEVDRTISHTILPVGMIKRLSVAVVVNN 384

Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
            + T+  G+ + +   D+  A+I+ +V  A G +  RGD++ I +  F
Sbjct: 385 RKATDPKGKVSSKPLTDAEKAQIDNLVKDAVGFDKNRGDSLNIQNAAF 432


>gi|238755308|ref|ZP_04616651.1| Flagellar M-ring protein [Yersinia ruckeri ATCC 29473]
 gi|238706444|gb|EEP98818.1| Flagellar M-ring protein [Yersinia ruckeri ATCC 29473]
          Length = 574

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 151/552 (27%), Positives = 256/552 (46%), Gaps = 73/552 (13%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  SP Y  LY  L   D   I   L++ NI +R ++NG ++ +P+  V + R+ LA Q
Sbjct: 48  LWAKSPDYRVLYSNLSDRDGGAIVTQLTQLNIPYRFAENGGALLIPADKVHETRLRLAQQ 107

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F ++I   RALEGE++RTI+++  ++  RVH+ MP 
Sbjct: 108 GLPKGGA-VGFELLDQ-EKFGISQFSEQINYQRALEGELSRTIETLGPVLNVRVHLAMPK 165

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    P+ASV +     RA++        AI ++V+++V  L  G+VTV+D TG+
Sbjct: 166 PSLFVREQKSPSASVTLTLQPGRALDDG---QINAIVYMVSSSVAGLPPGNVTVVDQTGR 222

Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT ++   R++    L     ++   +  I   LA  +G  N  + V A+++  T++  
Sbjct: 223 LLTQSDSAGRDLNAAQLKFTNEVEVRFQRRIESILAPMVGNGNVHAQVTAQVDFATREQT 282

Query: 275 EIVYDPDSKVE----RSIRLSKDAQRSET----------SQPES--AVTVEQNMPHVSDR 318
           +  Y P+ + E    RS +LS+  Q   T          +QP +  A  +E      +  
Sbjct: 283 DEEYKPNQRPEQGAVRSQQLSQSEQVGGTPIGGVPGALSNQPSATPAAPIETPAAPGATG 342

Query: 319 KVPL-----------------PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
                                  ++  + +++E +NYE++     T      ++RLS+AV
Sbjct: 343 AAANTATATPATRNTSAGTAGKNAVPGSSRRDETTNYEVDRTIRHTQQQAGMVQRLSVAV 402

Query: 362 VVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           VVN       LG     GK        LA+I  +   A G +++RGDT+ + +  F E +
Sbjct: 403 VVN------YLGIDKKSGKPIALSKDQLAQIEALTREAMGFSTQRGDTLNVVNTPFTEAE 456

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
             NS    + F    S  F  V+NA  +L+  L+   L    +R L     AKK EV   
Sbjct: 457 ETNSA---LPFWKSQS-FFDQVLNAGRYLLILLVAWILWRKLVRPLM----AKKMEVN-- 506

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
                P I++A T         +   SN D  +  +  Q R+++ V  Q   R+  + + 
Sbjct: 507 -----PVIAAAKTVAQTAEAAESAKQSN-DELAQRKKSQQRVSAEVQAQ---RIRELADK 557

Query: 538 NEERFAKILRKW 549
           +    A ++R+W
Sbjct: 558 DPRVVALVIRQW 569


>gi|67641495|ref|ZP_00440272.1| flagellar M-ring protein FliF [Burkholderia mallei GB8 horse 4]
 gi|121601133|ref|YP_994240.1| flagellar MS-ring protein [Burkholderia mallei SAVP1]
 gi|124383455|ref|YP_001028106.1| flagellar MS-ring protein [Burkholderia mallei NCTC 10229]
 gi|126448962|ref|YP_001082916.1| flagellar MS-ring protein [Burkholderia mallei NCTC 10247]
 gi|161579508|ref|YP_104753.2| flagellar MS-ring protein [Burkholderia mallei ATCC 23344]
 gi|167004331|ref|ZP_02270091.1| flagellar M-ring protein FliF [Burkholderia mallei PRL-20]
 gi|254175223|ref|ZP_04881884.1| flagellar M-ring protein FliF [Burkholderia mallei ATCC 10399]
 gi|254201855|ref|ZP_04908219.1| flagellar M-ring protein FliF [Burkholderia mallei FMH]
 gi|254207184|ref|ZP_04913535.1| flagellar M-ring protein FliF [Burkholderia mallei JHU]
 gi|254359688|ref|ZP_04975959.1| flagellar M-ring protein FliF [Burkholderia mallei 2002721280]
 gi|121229943|gb|ABM52461.1| flagellar M-ring protein FliF [Burkholderia mallei SAVP1]
 gi|124291475|gb|ABN00744.1| flagellar M-ring protein FliF [Burkholderia mallei NCTC 10229]
 gi|126241832|gb|ABO04925.1| flagellar M-ring protein FliF [Burkholderia mallei NCTC 10247]
 gi|147747749|gb|EDK54825.1| flagellar M-ring protein FliF [Burkholderia mallei FMH]
 gi|147752726|gb|EDK59792.1| flagellar M-ring protein FliF [Burkholderia mallei JHU]
 gi|148028902|gb|EDK86834.1| flagellar M-ring protein FliF [Burkholderia mallei 2002721280]
 gi|160696268|gb|EDP86238.1| flagellar M-ring protein FliF [Burkholderia mallei ATCC 10399]
 gi|238522438|gb|EEP85882.1| flagellar M-ring protein FliF [Burkholderia mallei GB8 horse 4]
 gi|243060331|gb|EES42517.1| flagellar M-ring protein FliF [Burkholderia mallei PRL-20]
          Length = 598

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 115/391 (29%), Positives = 191/391 (48%), Gaps = 27/391 (6%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 81  WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 140

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++S + + AARV++ +P  
Sbjct: 141 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESSNAVRAARVYLAIPKP 198

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++      V    +  A+  +V+++VP++   +VT++D  G LLT 
Sbjct: 199 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 258

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 259 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 318

Query: 280 PDSKVERS-IRLSKDAQRSE----------------TSQPESAVTVEQNMPHVSDRKVPL 322
           P+   ++S IR  + +  +E                  QP SA  V  N         P+
Sbjct: 319 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 378

Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382
                 +D+K+  +NYE++            ++RLS+AVVVN    T+  GR   Q    
Sbjct: 379 ------SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAA 432

Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413
             LA++ ++V  A G + +RGD++ + +  F
Sbjct: 433 DKLAQVQQLVKDAMGYDEKRGDSVNVVNSAF 463


>gi|284007155|emb|CBA72437.1| flagellar M-ring protein FliF [Arsenophonus nasoniae]
          Length = 554

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 125/417 (29%), Positives = 204/417 (48%), Gaps = 42/417 (10%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A  +   I  F+AA F++    Y  +Y  L   D   I   LS+ NI +++S +GS 
Sbjct: 30  LIVAGALA--ITFFIAAMFWLQGADYRPVYTNLSDKDGGEIVTQLSQMNIPYQLSADGSM 87

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           + VP+  V + R+ LA QGLP    N+G+EL D+   FGL+ F ++I   RALEGE+A+T
Sbjct: 88  VKVPADQVHEVRLKLAQQGLP-KGGNAGFELLDQ-EKFGLSQFSEQINYQRALEGELAKT 145

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I+S+  +  ARVH+ +P    F +    PTASV +   N       +  AI H+++++V 
Sbjct: 146 IESLGVVQRARVHLAIPKPSLFVREQKNPTASVTLNLQNGRKLDEGQIAAIVHMISSSVS 205

Query: 201 NLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L   +VT++D  G LLT  + + R++    L+ VQ+I++  +  I   +   +G  N  
Sbjct: 206 GLASSNVTIVDQLGNLLTQPDGISRDLNLTQLNYVQSIENRYKQRIESIIMPLVGRGNVH 265

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE--------------TSQPESA 305
           + V A++N    +     Y P+     S   SK   RSE              ++QP  A
Sbjct: 266 AQVTAQINFARTEETAEEYKPNQPPNESAVRSKQTSRSEQNGQLLVGGVPGALSNQPTPA 325

Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365
                + P+  D+  P P +  +  + +E +NYEI+ +   T H    L+RLS+A++VN 
Sbjct: 326 PKAPIDKPN--DKNAPQPINNNHNSRVDETTNYEIDRRIRHTQHQIGNLQRLSVAIIVN- 382

Query: 366 GRLTEVLGRSADQGK---------IDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
                     AD  K          D  L +I  +   A   + +RGD++ + +  F
Sbjct: 383 ---------YADSDKKENDDSLPLTDEKLTQIKTLAQEAMEFSEQRGDSLYVVNAPF 430


>gi|315497627|ref|YP_004086431.1| flagellar m-ring protein flif [Asticcacaulis excentricus CB 48]
 gi|315415639|gb|ADU12280.1| flagellar M-ring protein FliF [Asticcacaulis excentricus CB 48]
          Length = 561

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 132/413 (31%), Positives = 212/413 (51%), Gaps = 28/413 (6%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110
           LY  L++ + + I+ AL +A I ++   +GS++ V    VG+ R+ LA++GLP++ S  G
Sbjct: 41  LYSNLDLKEASEITAALDQAGIKYQAKGDGSTLMVDRDTVGETRLMLASKGLPTAGS-VG 99

Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170
           YELFDK  + G T F+Q +   RALEGE+ARTI ++ GI +ARVH+VMP    F++  A 
Sbjct: 100 YELFDKAPALGQTEFVQNLNNQRALEGELARTIATLKGINSARVHLVMPKRELFQEEAAA 159

Query: 171 PTASVMIRAINPSVY-KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK 229
           PTASV++   N  +  +   AIR+LVA AVPNL    VT++D   +LL A   + N+LG 
Sbjct: 160 PTASVVVGLSNTELSGEQVRAIRNLVAGAVPNLKANAVTLVDDKNRLLAAGGEDDNLLGA 219

Query: 230 SLSIVQA-IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288
             +  +  I+  +   +   +   +G    R  V A++++++    +  YDPD +V RS 
Sbjct: 220 GGAERKTEIEETLRKRVKDIVEGVVGPGAARVTVTADIDLNSLTREQTQYDPDGQVVRST 279

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN-TDKKEEQSNYEI-NTKSIA 346
           R       S  +     VT + N+P       P   +  N ++   E +NYEI NTK+  
Sbjct: 280 RTDTSTDSSTDNANNGTVTAQANIP--GGAAAPGQGTTGNQSETTGELTNYEISNTKTTE 337

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY-------LAEINKIVSAATGIN 399
                  +++L++AVVV+ G  T     +AD     +Y       + +I ++V AA G  
Sbjct: 338 VIAPG-AIKKLAVAVVVD-GTWTP----AADGKSPPTYAPRSAQDMQQIEELVRAAIGYT 391

Query: 400 SR-------RGDTITITSMDFLENQLFNSGTVQVSFM-DILSRHFATVINALV 444
            +       R D + +T++ F  +     GT   + M D       T I  L+
Sbjct: 392 DQTATNPNGRKDELKVTNIRFARDAAGLGGTTASAGMFDFTKDDIVTAIQWLI 444


>gi|298530643|ref|ZP_07018045.1| flagellar M-ring protein FliF [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298510017|gb|EFI33921.1| flagellar M-ring protein FliF [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 532

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 125/425 (29%), Positives = 220/425 (51%), Gaps = 23/425 (5%)

Query: 21  RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80
           RIL+ A + L  I  F    FF+  P Y  L   L   D +R+   L   N+ +++ D+G
Sbjct: 24  RILV-AGLGLSVIAAFAFLMFFITRPDYRVLSSDLYPEDASRVVEILESENVRYQLEDDG 82

Query: 81  SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140
           ++I VP+  V K R+ ++ +G+       G+ELFD     G T F+Q +   RAL+GE+A
Sbjct: 83  TTILVPADQVHKMRLAISGEGV-LRGEGMGFELFDDTG-IGQTDFVQNVNYQRALQGELA 140

Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAA 198
           RTI   S +  ARVH+VMP+   F +    P+AS++++  +    +S+  ++I +LV   
Sbjct: 141 RTISEFSEVEHARVHLVMPERSLFIEEETPPSASIVLQLRSGQRLESSQIQSIVNLVVTG 200

Query: 199 VPNLDMGDVTVLDSTGKLLTANEMERNIL-GKSLSIVQA---IQHEIEMNINKALAAFLG 254
           V  +D   VT+ D++G++L   E ++++L G S + ++     Q ++E  I   L  F G
Sbjct: 201 VEGMDSDRVTISDTSGRVLY--EPQKDLLDGMSSTQLEYQLNFQRDLERRIEHMLTPFAG 258

Query: 255 VDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPH 314
                + V A+L+ D +  R+ ++DPD  V RS       QRS T +      +E+ +P 
Sbjct: 259 PGRVIAKVNADLDFDRRTTRQEIFDPDGSVVRS------EQRS-TEESSGGTFMEEGVPE 311

Query: 315 VS-DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373
               +    P + + T + +  +N+EI+ +          ++RLS+AV+V+   +T+  G
Sbjct: 312 PDFQQGFEGPATTQETSRSDRTTNFEISREEHNIVASVGSVDRLSVAVLVDGQHVTDDAG 371

Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433
               +   D  +  I ++V  A G +  RGD+I ++S+DF   ++    T+    MD L+
Sbjct: 372 EMVYEPLADEEMQRIQQLVERAVGFDQERGDSIEVSSVDFGAPEVEPEPTL----MDNLA 427

Query: 434 RHFAT 438
           ++F T
Sbjct: 428 QYFQT 432


>gi|119899006|ref|YP_934219.1| flagellar MS-ring protein [Azoarcus sp. BH72]
 gi|119671419|emb|CAL95332.1| flagellar M-ring protein [Azoarcus sp. BH72]
          Length = 562

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 119/396 (30%), Positives = 191/396 (48%), Gaps = 23/396 (5%)

Query: 36  FMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARI 95
            + A  +   P Y  L+  L+  D  ++  AL + N+ +R+S NG SI VP   V + R+
Sbjct: 49  IVGALMWNRQPDYGVLFSNLDERDGGQVIAALQQQNVPYRMSPNGLSILVPQEQVHELRL 108

Query: 96  HLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVH 155
            LAA GLP      G+EL D     G++ F +++   RALEGE++RTIQSI+ + AARVH
Sbjct: 109 RLAAAGLPRGGL-VGFELMD-TQKLGVSQFNEQVNYQRALEGELSRTIQSIAAVAAARVH 166

Query: 156 IVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDS 212
           + MP   +F +   +PTASVM+  + P     A     I HLV+++VP +    V ++D 
Sbjct: 167 LAMPKQTAFLRDDQKPTASVMV-TLRPGRVLDANQVAGIVHLVSSSVPRMVESGVNIIDQ 225

Query: 213 TGKLLTANE---MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
            G+LLT       +  +    L  V+ ++      I   L   +G +NFR+ V A+++ +
Sbjct: 226 NGELLTTKNDPLRQTGLDATQLEYVKEVEAGFIRRIENILQPMVGKNNFRAQVAADVDFN 285

Query: 270 TQQIREIVYDPDSKVERSIRLSKDAQRSE------------TSQPESAVTVEQNMPHVSD 317
             +     + P+   +++IR  +  + +             ++QP    T     P V  
Sbjct: 286 QVEQTAETFKPNPSPDQAIRSQQTTEETNRQPGPQGVPGALSNQPPVPATAPITTPPVGP 345

Query: 318 RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSAD 377
            +    ++   T  +    NYE++           +L+RLS+AVVVN    T   G++  
Sbjct: 346 NQAGAAQT--GTTSRSAVLNYEVDRTIQHVKQSLGQLKRLSVAVVVNHRTETLPNGQTQT 403

Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
               D  +A IN +V  A G N  RGDTI + S  F
Sbjct: 404 VPLTDEEVARINNLVREAVGYNPARGDTINVASSPF 439


>gi|52428288|gb|AAU48881.1| flagellar M-ring protein FliF [Burkholderia mallei ATCC 23344]
          Length = 543

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 115/391 (29%), Positives = 191/391 (48%), Gaps = 27/391 (6%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 26  WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 85

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++S + + AARV++ +P  
Sbjct: 86  LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESSNAVRAARVYLAIPKP 143

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++      V    +  A+  +V+++VP++   +VT++D  G LLT 
Sbjct: 144 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 203

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 204 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 263

Query: 280 PDSKVERS-IRLSKDAQRSE----------------TSQPESAVTVEQNMPHVSDRKVPL 322
           P+   ++S IR  + +  +E                  QP SA  V  N         P+
Sbjct: 264 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 323

Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382
                 +D+K+  +NYE++            ++RLS+AVVVN    T+  GR   Q    
Sbjct: 324 ------SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAA 377

Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413
             LA++ ++V  A G + +RGD++ + +  F
Sbjct: 378 DKLAQVQQLVKDAMGYDEKRGDSVNVVNSAF 408


>gi|167568365|ref|ZP_02361239.1| flagellar MS-ring protein [Burkholderia oklahomensis C6786]
          Length = 554

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 114/391 (29%), Positives = 191/391 (48%), Gaps = 27/391 (6%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G ++ VP++ V + R+ LA+ G
Sbjct: 37  WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAVLVPANQVHETRLKLASMG 96

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RTI+SI+ + +ARVH+ +P  
Sbjct: 97  LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTIESINTVRSARVHLAIPKP 154

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++      V    +  A+  +V+++VP++   +VT++D  G LLT 
Sbjct: 155 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 214

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 215 TASASGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 274

Query: 280 PDSKVERS-IRLSKDAQRSE----------------TSQPESAVTVEQNMPHVSDRKVPL 322
           P+   +++ IR  + +  +E                  QP SA  V  N         P+
Sbjct: 275 PNGAPQQTAIRSQQTSTATELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 334

Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382
                 +D+K+  +NYE++            ++RLS+AVVVN     +  GR   Q    
Sbjct: 335 ------SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPAADAKGRVTMQPLTA 388

Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413
             LA+I ++V  A G + +RGD++ + +  F
Sbjct: 389 EKLAQIQQLVKDAMGYDEKRGDSVNVVNSAF 419


>gi|310764888|gb|ADP09838.1| Flagellar basal-body M-ring protein [Erwinia sp. Ejp617]
          Length = 561

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 128/452 (28%), Positives = 218/452 (48%), Gaps = 46/452 (10%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           F+   P Y  L+  +   D   I   LS+ N+ +RI   G +I VP + V + R+ +A Q
Sbjct: 47  FWAKEPGYRVLFNNVSDEDGGAIVSQLSQMNVPYRIDTPGGAIMVPEAQVHEVRMKMAQQ 106

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   S  G+EL D+   FG++ F +++   RALEGE+ARTI+++  I  ARVH+ +P 
Sbjct: 107 GLPKGGS-VGFELLDQ-EKFGISQFSEQVNFQRALEGELARTIENLGPIQHARVHLAVPK 164

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +   +PTASV +           +  AI HL+++AV  L  G+VT++D  G LLT
Sbjct: 165 PSMFVRDQKQPTASVNVTLAQGRTLDDGQVTAITHLISSAVSGLPAGNVTLVDQRGNLLT 224

Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
            +     +    +     I+ + +  I + LA  +G  N R+ V A+L+   Q+  +  Y
Sbjct: 225 QSGTGA-LQSSQVKYTNEIEADYQQRIQRLLAPLVGDSNVRTQVTAQLDFTQQERTDEQY 283

Query: 279 DPDSKVER-SIRLSKDAQRSE-------------TSQPESAVTVEQNMP---------HV 315
            P+++ E+ +IR  + +Q ++             ++QP +  T     P         + 
Sbjct: 284 QPNAEREKMAIRSRQSSQAAQGNGRGAGGVPGALSNQPPTPATAPLTKPLNAPAANGKNA 343

Query: 316 SDRKVPLPRSLEN--TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373
           ++ K P    +     ++ +E +NYE++   I T      ++RLS+AVV+N        G
Sbjct: 344 NNEKTPAAGEVAQPYNNRNDETTNYELDRTLIHTKTSVGHIQRLSVAVVINH----MAQG 399

Query: 374 RSADQGKIDSY-LAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDIL 432
                G + +  LA IN +V  A G + +RGD+I I +  F       +G  +     + 
Sbjct: 400 AEGKPGPLPAAELARINTLVKEAIGYSEQRGDSINIVNSPF-------NGVAEEVMPPLW 452

Query: 433 SRH-FATVINALVFLVGTLLVTFLGLHALRRL 463
            +H F T+   ++ L   L++  +G    RRL
Sbjct: 453 QQHSFQTL---MMTLARYLVIAIIGWVMWRRL 481


>gi|94987299|ref|YP_595232.1| flagellar biosynthesis/type III secretory pathway lipoprotein
           [Lawsonia intracellularis PHE/MN1-00]
 gi|94731548|emb|CAJ54911.1| Flagellar biosynthesis/type III secretory pathway lipoprotein
           [Lawsonia intracellularis PHE/MN1-00]
          Length = 554

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 126/408 (30%), Positives = 208/408 (50%), Gaps = 23/408 (5%)

Query: 21  RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80
           ++ I  S + V  ++F+   F++N   Y  LY  L   D N I   L    + ++++DNG
Sbjct: 24  KLFIGGSAVFV-TLIFIGLMFWINRTDYKVLYSNLGPEDANHIIKTLQADKVSYQLADNG 82

Query: 81  SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140
            +I VP+S V   RI +A +G     S  G+E+FD VN  G T F+Q I   RAL+GE++
Sbjct: 83  KTILVPASSVYDLRIKIAGEG-GMVGSGIGFEIFDAVN-VGQTDFVQRINYQRALQGELS 140

Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV---YKSAEAIRHLVAA 197
           RTI     + +ARVH+V+P    F +   +P+ASV+++  NPS     K  + + +++  
Sbjct: 141 RTISEFPNVESARVHLVIPQRSLFIEEQQKPSASVVLKLKNPSRKMDQKEVQGMVNMLVM 200

Query: 198 AVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ-----AIQHEIEMNINKALAAF 252
           AV  LD   V++ DS GK L     E N+ G  LS+ Q      ++  +E  I++ L   
Sbjct: 201 AVEGLDKEHVSITDSLGKPLYFPN-EDNLAG--LSVTQREYKLKVEQGLERRIDELLIPL 257

Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNM 312
           +G     + V  +L+ + + IR  +YDP+S V RS + S++  R +++       +E   
Sbjct: 258 MGQGKVIAKVNVDLDFNQKTIRREIYDPNSSVIRSEQRSEETNRGQSN-------LESGS 310

Query: 313 PHVSDRKVPLPRSLENTDKKEE--QSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTE 370
           P V+ R      ++   +   E   +NYEIN +      +  ++ R+++AVVV+   + E
Sbjct: 311 PDVNFRGDGPNGAMSTQEGTRETRTTNYEINREEQNIVGEVGQINRMTVAVVVDGTYVKE 370

Query: 371 VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
             G      +    L  I  +VS A G +  RGDTI ++S+ F E  L
Sbjct: 371 PNGEYKFVPRSQEELNRIRLLVSHAIGFDRARGDTIEVSSIPFDEADL 418


>gi|329888114|ref|ZP_08266712.1| flagellar M-ring protein FliF [Brevundimonas diminuta ATCC 11568]
 gi|328846670|gb|EGF96232.1| flagellar M-ring protein FliF [Brevundimonas diminuta ATCC 11568]
          Length = 545

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 118/373 (31%), Positives = 192/373 (51%), Gaps = 19/373 (5%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110
           LY  L++ + + IS AL +A I +    +GS+I V    VG AR+ LA +GL +S S  G
Sbjct: 45  LYSNLDLREASEISAALDQAGIKYSSKGDGSTIFVSRDEVGTARLMLAGKGLVTSGS-VG 103

Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170
           YE+FD  +  G T F Q +   RAL+GE+ARTI S+ GI +ARVHI MP    F+     
Sbjct: 104 YEIFDNQSVLGQTEFQQNLNEQRALQGELARTIMSMRGISSARVHITMPRREMFQAAAID 163

Query: 171 PTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK 229
           PTA+V++      +      AIR++VA++VPNL    VTV D   + L A   +      
Sbjct: 164 PTAAVVVGLSGRDLSADQVRAIRNVVASSVPNLKPDKVTVTDQANRTLAAGSEDTGFTSA 223

Query: 230 SLSIVQA-IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288
           +    +A  + +++  I   +   +G    R  V A+++      +E  +DPD +V RS 
Sbjct: 224 TAEASKASTEAQMQARIKDIVEGVVGAGAARVQVTADIDHSRSTTQEQKFDPDGQVVRST 283

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKE-EQSNYEINTKSIAT 347
             +    +  T Q +  VT   N+P     + P    + +T+ +  E +NYEI+  +  T
Sbjct: 284 STNGSQSQDTTGQQDGGVTATNNIPG---GQAPNTTPIGSTNSENTETTNYEISNTTTTT 340

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLA-------EINKIVSAATGINS 400
             +  ++++LS++V V+ G+ T     +AD     +Y A       +I  +V+AA GI+ 
Sbjct: 341 VKEPGEVKKLSVSVAVD-GKYTP----AADGKGEPTYAARTAEEVQQIKALVAAAVGIDE 395

Query: 401 RRGDTITITSMDF 413
            RGD + + ++ F
Sbjct: 396 TRGDKLEVVNVRF 408


>gi|325981191|ref|YP_004293593.1| flagellar M-ring protein FliF [Nitrosomonas sp. AL212]
 gi|325530710|gb|ADZ25431.1| flagellar M-ring protein FliF [Nitrosomonas sp. AL212]
          Length = 571

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 143/489 (29%), Positives = 232/489 (47%), Gaps = 64/489 (13%)

Query: 15  TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF 74
           +SL   + L L +     I L + A  +  +P Y  LY  L   D   I  AL + N+ +
Sbjct: 23  SSLSNQKKLGLITSAAAVIALLVGALMWSQAPEYRALYNNLSDHDGAAIISALQQMNVPY 82

Query: 75  RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134
             S++G +I +P   V + R+ LA QGLP      G+EL +    FG + F++++   RA
Sbjct: 83  TFSESGGTILIPEKQVHEVRLKLAGQGLPKGGL-VGFELMEN-QKFGSSQFLEQVNYQRA 140

Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AI 191
           LEGE+AR++QS+S + +ARVH+ +     F +   +P+ SV++  + P    S E   AI
Sbjct: 141 LEGELARSVQSLSAVQSARVHLAIAKPSVFSREKQQPSVSVLLN-LYPGRVLSIEQVSAI 199

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKA 248
            HL+A++VPNL + +VTV+D  G LL++   ++       K L+ +Q ++      I   
Sbjct: 200 VHLMASSVPNLPVKNVTVVDQNGNLLSSQNDKKEDSRFDAKQLAYIQELEENYIRRIETI 259

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS-------- 300
           L    G  N R+ V A+++    +  E  Y P++    + R S  +Q++  S        
Sbjct: 260 LTPITGATNVRAQVTADVDFSRIERAEETYRPNNT--EADRASIRSQQTHESMSIGSKFD 317

Query: 301 ----------QPESAVT-VE-----------QNMPHVSDRKVPLPRSLENTDKKEEQS-N 337
                      PE A+  +E           +     +D   PLP     TDKK+E + N
Sbjct: 318 GGIPGALTNRPPEPAIAPIEAGGKKPAGDKAEGDEEETDSTPPLP-----TDKKKESTIN 372

Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG 397
           YE++     T      ++RLS AVVVN  +  +  G    +      + EIN +V  A G
Sbjct: 373 YEVDKTVQHTQQSTGNIKRLSAAVVVNYRKKVDESGAITYEPLSAEEIKEINNLVREAMG 432

Query: 398 INSRRGDTITITSMDFLENQLFNSGT---VQVSFMD-----ILSRHFAT---VINALVFL 446
            N RRGD++T+T      N LF   T   ++V F       +L++ FA    +I  ++F 
Sbjct: 433 YNERRGDSLTVT------NGLFTGETETVLEVPFWKDPDVIMLAKDFAKQLLIIGVVLFF 486

Query: 447 VGTLLVTFL 455
           +  +L  FL
Sbjct: 487 LLKILRPFL 495


>gi|320529385|ref|ZP_08030473.1| flagellar M-ring protein FliF [Selenomonas artemidis F0399]
 gi|320138351|gb|EFW30245.1| flagellar M-ring protein FliF [Selenomonas artemidis F0399]
          Length = 526

 Score =  167 bits (423), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 127/459 (27%), Positives = 226/459 (49%), Gaps = 33/459 (7%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           R R ++L S + +  ++F  + ++ + P    L+  +E  D   ++  L EA I + + D
Sbjct: 18  RQRYIMLGSALAILALIFGLSFWYGSKPDMVPLFTDMETKDAGEVANQLREAKISYEVQD 77

Query: 79  --NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136
             NG++I VP++ V +AR++LA QGLP    N G+E+FD  +  G+T F   +  ++AL+
Sbjct: 78  GKNGTTILVPTTNVHEARLNLATQGLPRG--NKGFEIFDD-SKLGVTEFQNRVNYLQALQ 134

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS---VYKSAEAIRH 193
           GE+ RTI+ I  +  ARVHIV+P+   ++K     TAS+M+R + P      K  + I +
Sbjct: 135 GELTRTIEQIDAVEKARVHIVLPEDSLYKKEEKPATASIMLR-LKPGTELTKKEIKGIVN 193

Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLS---IVQAIQHEIEMNINKA 248
           L A +V  L   ++T++D TGK+L    ++ E+++  K+L+   + + +Q  IE  +   
Sbjct: 194 LAAHSVKGLTPENITIVDDTGKILNDPDDQDEKSVGVKTLTQLDMTRKVQDNIEKKVQSL 253

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQRSETSQPESA 305
           L   LG     + V  EL+ D +   +  + P   D+ + RS +   +     ++ P   
Sbjct: 254 LDQTLGEGRAVARVSVELDFDDRLTDKQTFTPVVDDAGIIRSQQDISENYTGSSTNPGGP 313

Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365
             V+ N+P   +++       E   KKE   NYEIN +          + RL++AV+VN 
Sbjct: 314 AGVQSNVPGYVEQESNANAQYE---KKESTKNYEINEERQHVIASPGSIRRLTVAVLVND 370

Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425
                       Q + +S L    + VS+A GIN  RGDTI++  + F +         +
Sbjct: 371 ---------DVTQPQQESIL----RTVSSAAGINQARGDTISVEPLPFSKEAAERRAAEE 417

Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
            +  D   R F   +  ++ ++  ++   L     +RL 
Sbjct: 418 QAEKDRQDRIFYAQVGIVLLIIALIVGGILMYRRKKRLE 456


>gi|171321708|ref|ZP_02910625.1| flagellar M-ring protein FliF [Burkholderia ambifaria MEX-5]
 gi|171093009|gb|EDT38241.1| flagellar M-ring protein FliF [Burkholderia ambifaria MEX-5]
          Length = 587

 Score =  167 bits (423), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 114/386 (29%), Positives = 191/386 (49%), Gaps = 16/386 (4%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VPS+ V + R+ LAA 
Sbjct: 79  LWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSNQVHETRLKLAAL 138

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   S  G+EL D    FG++ F +++   RALEGE+ RTI+SI+ +  ARVH+ +P 
Sbjct: 139 GLPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLAIPK 196

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +      V      +AI  +V++ VP++   +VT++D  G LLT
Sbjct: 197 PSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGNLLT 256

Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
                  +    L  VQ ++   +  I+  LA   G  N RS V A+++    +     Y
Sbjct: 257 QTASASGLDASQLKYVQQVERNTQKRIDAILAPIFGTGNARSQVSADIDFSKLEQTSESY 316

Query: 279 DPDSKVER-SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLP----------RSLE 327
            P+   ++ +IR  + +  +E +Q   A  V   + +   +    P          +S  
Sbjct: 317 APNGTPQQAAIRSQQTSSATELAQ-GGASGVPGALSNTPPQPASAPIVAGNGQNGAQSTP 375

Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE 387
            +D+K++ +NYE++            ++RLS+AVVVN   + +  G    Q      LA+
Sbjct: 376 VSDRKDQTTNYELDKTIRHVEQPMGNVKRLSVAVVVNYQPVADAKGHVTMQPLPPPKLAQ 435

Query: 388 INKIVSAATGINSRRGDTITITSMDF 413
           I ++V  A G + +RGD++ + +  F
Sbjct: 436 IEQLVKDAMGYDEKRGDSVNVVNSAF 461


>gi|115353160|ref|YP_774999.1| flagellar MS-ring protein [Burkholderia ambifaria AMMD]
 gi|115283148|gb|ABI88665.1| flagellar M-ring protein FliF [Burkholderia ambifaria AMMD]
          Length = 587

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 113/386 (29%), Positives = 191/386 (49%), Gaps = 16/386 (4%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VPS+ V + R+ LAA 
Sbjct: 79  LWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSNQVHETRLKLAAL 138

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   S  G+EL D    FG++ F +++   RALEGE+ RTI+SI+ +  ARVH+ +P 
Sbjct: 139 GLPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLAIPK 196

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +      V      +AI  +V++ VP++   +VT++D  G LLT
Sbjct: 197 PSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGNLLT 256

Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
                  +    L  VQ ++   +  I+  LA   G  N RS V A+++    +     Y
Sbjct: 257 QTASASGLDASQLKYVQQVERNTQKRIDSILAPIFGTGNARSQVSADIDFSKLEQTSESY 316

Query: 279 DPDSKVER-SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLP----------RSLE 327
            P+   ++ +IR  + +  +E +Q   A  V   + +   +    P          +S  
Sbjct: 317 SPNGTPQQAAIRSQQTSSATELAQ-GGASGVPGALSNTPPQPASAPIVAGNGQNGAQSTP 375

Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE 387
            +D+K++ +NYE++            ++RLS+AVVVN   + +  G    Q      LA+
Sbjct: 376 VSDRKDQTTNYELDKTIRHVEQPMGNVKRLSVAVVVNYQPVADAKGHVTMQPLPPPKLAQ 435

Query: 388 INKIVSAATGINSRRGDTITITSMDF 413
           + ++V  A G + +RGD++ + +  F
Sbjct: 436 VEQLVKDAMGYDEKRGDSVNVVNSAF 461


>gi|170700811|ref|ZP_02891802.1| flagellar M-ring protein FliF [Burkholderia ambifaria IOP40-10]
 gi|170134298|gb|EDT02635.1| flagellar M-ring protein FliF [Burkholderia ambifaria IOP40-10]
          Length = 587

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 114/386 (29%), Positives = 191/386 (49%), Gaps = 16/386 (4%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VPS+ V + R+ LAA 
Sbjct: 79  LWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSNQVHETRLKLAAL 138

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   S  G+EL D    FG++ F +++   RALEGE+ RTI+SI+ +  ARVH+ +P 
Sbjct: 139 GLPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLAIPK 196

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +      V      +AI  +V++ VP++   +VT++D  G LLT
Sbjct: 197 PSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGNLLT 256

Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
                  +    L  VQ ++   +  I+  LA   G  N RS V A+++    +     Y
Sbjct: 257 QTASASGLDASQLKYVQQVEGNTQKRIDAILAPIFGTGNARSQVSADIDFSKLEQTSESY 316

Query: 279 DPDSKVER-SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLP----------RSLE 327
            P+   ++ +IR  + +  +E +Q   A  V   + +   +    P          +S  
Sbjct: 317 GPNGTPQQAAIRSQQTSSATELAQ-GGASGVPGALSNTPPQPASAPIVAGNGQNGAQSTP 375

Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE 387
            +D+K++ +NYE++            ++RLS+AVVVN   + +  G    Q      LA+
Sbjct: 376 VSDRKDQTTNYELDKTIRHVEQPMGNVKRLSVAVVVNYQPVADAKGHVTMQPLPPPKLAQ 435

Query: 388 INKIVSAATGINSRRGDTITITSMDF 413
           I ++V  A G + +RGD++ + +  F
Sbjct: 436 IEQLVKDAMGYDEKRGDSVNVVNSAF 461


>gi|167561148|ref|ZP_02354064.1| flagellar MS-ring protein [Burkholderia oklahomensis EO147]
          Length = 490

 Score =  166 bits (421), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 114/391 (29%), Positives = 191/391 (48%), Gaps = 27/391 (6%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G ++ VP++ V + R+ LA+ G
Sbjct: 50  WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAVLVPANQVHETRLKLASIG 109

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RTI+SI+ + +ARVH+ +P  
Sbjct: 110 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTIESINTVRSARVHLAIPKP 167

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++      V    +  A+  +V+++VP++   +VT++D  G LLT 
Sbjct: 168 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 227

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 228 TASASGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 287

Query: 280 PDSKVERS-IRLSKDAQRSE----------------TSQPESAVTVEQNMPHVSDRKVPL 322
           P+   +++ IR  + +  +E                  QP SA  V  N         P+
Sbjct: 288 PNGAPQQTAIRSQQTSTATELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 347

Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382
                 +D+K+  +NYE++            ++RLS+AVVVN     +  GR   Q    
Sbjct: 348 ------SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPAADAKGRVTMQPLTA 401

Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413
             LA+I ++V  A G + +RGD++ + +  F
Sbjct: 402 EKLAQIQQLVKDAMGYDEKRGDSVNVVNSAF 432


>gi|114330758|ref|YP_746980.1| flagellar M-ring protein FliF [Nitrosomonas eutropha C91]
 gi|114307772|gb|ABI59015.1| flagellar M-ring protein FliF [Nitrosomonas eutropha C91]
          Length = 547

 Score =  166 bits (421), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 121/394 (30%), Positives = 200/394 (50%), Gaps = 28/394 (7%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  LY  L   +   I  AL + N+ ++ S++  SI VP + V + R+HLA Q
Sbjct: 48  LWSQTPDYRVLYANLSEQEGGAIIDALQKMNVPYQFSESSGSILVPVNQVHEVRLHLAGQ 107

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP  +  SG+E+ +    FG + F++++   RALEGE+AR+IQS+S +  ARVH+ +  
Sbjct: 108 GLPKGNL-SGFEILEN-QKFGSSQFLEQVNYQRALEGELARSIQSLSAVQGARVHLAIAR 165

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +   +P+ SV++     R ++P   +   AI HLV++++P+L + +VTV+D  G 
Sbjct: 166 PSVFTRERQQPSVSVLLNLHHGRMLSP---EQVSAIVHLVSSSIPDLTVKNVTVVDQQGN 222

Query: 216 LLTA---NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272
           LL+    N+ME  +    L  VQ ++      I   L    G DN  + V A+++    +
Sbjct: 223 LLSGQKENQMETGLDPGQLKYVQDMEQNFVRRIEAILTPVTGQDNVHAQVTADIDFSRIE 282

Query: 273 IREIVYDPDSKVERSIRLSKDAQRSET---SQPESAV--TVEQNMPHVSDRKVPLPRSLE 327
             E  Y P++  E S  + +  Q+SE+   SQP+  V   +    P  +   V      E
Sbjct: 283 RSEETYRPNNNPEESAAV-RSQQKSESVSISQPDGGVPGALSNRPPAPAQAPVETKEGQE 341

Query: 328 NT-------DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN-KGRLTEVLGRSADQG 379
            T        +KE  +NYE++           ++ RLS AVVVN + R+ E  G   ++ 
Sbjct: 342 ETAQTTPTDTRKESTTNYEVDKTISHIRQSTGQINRLSAAVVVNYRTRMNEE-GNPINEP 400

Query: 380 KIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
                + +I  +V  A G +  RGDT+T+T+  F
Sbjct: 401 LSGEEIEKITALVKQAIGFSEARGDTLTVTNSQF 434


>gi|238927418|ref|ZP_04659178.1| flagellar M-ring protein FliF [Selenomonas flueggei ATCC 43531]
 gi|238884700|gb|EEQ48338.1| flagellar M-ring protein FliF [Selenomonas flueggei ATCC 43531]
          Length = 526

 Score =  166 bits (421), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 128/459 (27%), Positives = 224/459 (48%), Gaps = 33/459 (7%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           R R ++L S +++  ++F  + ++ + P    L+  +E  D   ++  L E+ I + I +
Sbjct: 18  RQRYIMLGSALVILALIFGLSFWYGSKPDMVPLFTDMETKDAGEVANQLRESKISYEIQE 77

Query: 79  N--GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136
           N  G++I VP++ V +AR++LA QGLP    N G+E+FD  +  G+T F   +  ++AL+
Sbjct: 78  NKSGTTILVPTANVHEARLNLAVQGLPRG--NKGFEIFDD-SKLGVTEFQNRVNYLQALQ 134

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS---VYKSAEAIRH 193
           GE+ RTI+ I  +  ARVHIV+P+   ++K     TAS+M+R + P+     K  + I +
Sbjct: 135 GELTRTIEQIEAVDKARVHIVLPEDSLYKKEEKPATASIMLR-LKPNTELTKKEIKGIVN 193

Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILG----KSLSIVQAIQHEIEMNINKA 248
           L A +V  L   ++T++D TGK+L   ++ +   LG      L + + +Q  IE  I   
Sbjct: 194 LAAHSVKGLTPENITIVDDTGKILNDPDDQDEKGLGVKTITQLDMTRKMQDSIEKKIQTL 253

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQRSETSQPESA 305
           L   LG     + V  EL+ D +      + P   DS + RS +   ++    ++ P   
Sbjct: 254 LDQTLGEGRAFARVSLELDFDDRLTDRQTFTPVVDDSGIVRSQQDISESYTGSSTNPGGP 313

Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365
             V+ N+P   +++     + E   KKE   NYEIN +          + R+++AV+VN 
Sbjct: 314 AGVQSNVPGYVEQESNANAAYE---KKESTKNYEINEERQHVIASPGSIRRMTVAVLVND 370

Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425
                       Q + +S L    + VS+A GIN  RGDTI++  + F            
Sbjct: 371 ---------DVTQPQQESIL----RTVSSAAGINQARGDTISVEPLPFSTEAAERRAAEL 417

Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
            +  D   R F   + A++ ++  ++   L     +RL 
Sbjct: 418 QAEKDRQDRIFYMQVGAVLLIIALIVAAVLMYRRKKRLE 456


>gi|83859389|ref|ZP_00952910.1| flagellar M-ring protein [Oceanicaulis alexandrii HTCC2633]
 gi|83852836|gb|EAP90689.1| flagellar M-ring protein [Oceanicaulis alexandrii HTCC2633]
          Length = 551

 Score =  166 bits (421), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 169/569 (29%), Positives = 274/569 (48%), Gaps = 47/569 (8%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF---VNSPHYDNLYVKLEVS 58
           AIL+QL +F      +GR     LA+++ +      A  FF   +NS     L+  L  +
Sbjct: 3   AILEQLSRF-----GVGR-----LAAILGLTAGAAAALVFFTMSMNSNGQALLFSGLGPA 52

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
           D   +S  L +A I + + + GS++ V +  V +AR+ +A+ G  S  S  GYE+FD+ +
Sbjct: 53  DAAAVSQRLDQAGISYELQEGGSAVYVSTDQVDEARMRVASGGALSFGS-VGYEIFDETD 111

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178
           + G TSF+Q +   RALEGE+AR+I +++ + AARVH+V+P+   F +    P+ASV+I 
Sbjct: 112 ALGTTSFVQNVNAKRALEGELARSINTLNTVSAARVHLVLPERRLFSREQQEPSASVVIS 171

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQ-A 236
                       IR+LVA AVP L    +T+ D  G+LL A ++ E ++LG  L   Q A
Sbjct: 172 VRGELPSAQINTIRNLVATAVPGLQANRITLADDQGRLLAAPSDAEGDVLGAMLDDRQNA 231

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           I+ +++  I   +   +G    R AV AE+N ++Q    + YDPD +VE S R + + +R
Sbjct: 232 IERDLQQKIRDLVEGIVGSGGVRVAVTAEINRESQTRTRLEYDPDGQVEVS-RRAIEERR 290

Query: 297 SETSQPESAVTVEQNMPHV---SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
           SE       V+V +N P     ++ + PL  + E++  +    N +  T SI    D   
Sbjct: 291 SEPVN-SGGVSVSENTPDAEAGANGETPLLATSESSTTERNYQNTQEETVSIIQAGD--- 346

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS----RRGDTI-TI 408
           LERL+++VVV++  +    G  + + + ++ L +I  +V+AA G  +      GD I  +
Sbjct: 347 LERLAVSVVVDEVAVVGEDGTLSFEPRSEAELTQIRNLVAAAVGFPTDTTLTDGDQILQV 406

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
           TSM F    L   GT       +    F  +    V  V  LLV  L    L        
Sbjct: 407 TSMRFNRPDL-TLGTPAPEGFSLARLDFMRIAEIAVLFVTALLVILLVARPL-------- 457

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIA--LDSSNQDIFSHSRNLQ------SRIN 520
             +G VG  S   P    +    G    DN+   L +S+  +     +        ++I 
Sbjct: 458 -VQGAVGNVSAARPALAGAGSGGGKALPDNVQALLGNSDGTVMLPEGDPSDDHIDVAQIE 516

Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKW 549
             V K S  ++  ++E + +    ILR W
Sbjct: 517 GQVKKSSVRKVAALVEQHPDESMSILRTW 545


>gi|161485650|ref|NP_419721.2| flagellar MS-ring protein [Caulobacter crescentus CB15]
 gi|221233887|ref|YP_002516323.1| flagellar MS-ring protein [Caulobacter crescentus NA1000]
 gi|220963059|gb|ACL94415.1| flagellar M-ring protein FliF [Caulobacter crescentus NA1000]
          Length = 554

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 140/531 (26%), Positives = 255/531 (48%), Gaps = 38/531 (7%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            F+     + LY  L++ + + ++ AL +A I +    +GS+I VP   V  AR+ +A +
Sbjct: 35  MFMGKEPSELLYSNLDLKEASEVTQALDQAGIKYETKGDGSTIMVPRDKVASARLMVAGK 94

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GL SS S  GYE+FD  N+ G T F+Q++ R RAL+GE+ RTI+++ G+ + RVH+V+P 
Sbjct: 95  GLVSSGS-IGYEIFDTNNALGQTDFVQQLNRQRALQGELERTIKAMQGVNSVRVHLVLPK 153

Query: 161 MGSFRKIGARPTASVMI--RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +   +P+A+V I   +  PS      AI++LV+++VPN+    V V+D  GK L+
Sbjct: 154 RQLFEEDAEQPSAAVTIGVGSREPS-SDMVRAIQNLVSSSVPNMKAEKVAVIDQHGKTLS 212

Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKA----LAAFLGVDNFRSAVVAELNMDTQQIR 274
           A   E ++ GK   + Q  + E+E  I K     +   LG    R  V AEL+++    +
Sbjct: 213 APSDE-SLAGK---MAQDRKSEVEARIAKTVKDMIEGVLGPGKARVNVTAELDLNRVTTQ 268

Query: 275 EIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEE 334
           E  +DPD +V RS   ++ + +   +   + VT   N+P          +    T + + 
Sbjct: 269 EERFDPDGQVIRSESTTEASSQENKNDDNAGVTAAANVPGGQGANG-FQQLGSRTGQNDA 327

Query: 335 QSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY-------LAE 387
            +NYEI+     T  +   ++++++AV ++      V    A  GK  +Y       + +
Sbjct: 328 VTNYEISKSVTTTVQEPGTIKKIAVAVAIDG-----VSAPMAADGKPGAYTPRTAQEIQQ 382

Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447
           I ++V  A G ++ RGD + +T++ F + +  + G  +   +    ++   ++ A    V
Sbjct: 383 IEELVKTAVGFDAERGDQVRVTNIKFPQPE--DQGLEEQGLLAGFDKN--DIMRAAELGV 438

Query: 448 GTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQ 506
             ++   + L A+R  + N+     G++        PP++  VT        + +D S +
Sbjct: 439 LAVVALLILLFAVRPFIKNLSAPAPGQIALAGPSGGPPVTRLVTLADGTQQQVVVDQSGE 498

Query: 507 DIFSHSRNLQ--------SRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549
            I      +         ++I   V   S  R+   +E + +    ILR W
Sbjct: 499 PIALAGPPVSDIDQRIDIAKIEGQVKASSIKRVSEFVEKHPDESVAILRNW 549


>gi|316935488|ref|YP_004110470.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris DX-1]
 gi|315603202|gb|ADU45737.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris DX-1]
          Length = 537

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 152/555 (27%), Positives = 255/555 (45%), Gaps = 33/555 (5%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +  LL F K G    R   +I  +V LV    F+  R  V+ P    LY  L V D + I
Sbjct: 1   MQNLLSFLK-GLGAARLMAMIAVTVALVGFFAFVIMR--VSQPQMTTLYTDLSVEDSSSI 57

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    I F + + G+ + VP   V + R+ LA +G        GYE+FDK ++ G T
Sbjct: 58  IKELERQGIPFEMRNEGAILLVPKDKVTRLRMKLA-EGGLPKGGGVGYEIFDKSDALGTT 116

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
           SF+Q I  +RALEGE++RTI++I  + AARVH+V+P    F +    P+AS+++R     
Sbjct: 117 SFVQNINHLRALEGELSRTIRAIDRVQAARVHLVLPARPLFSREAPEPSASIVLRVRGAL 176

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-----TANEMERNILGKSLSIVQAIQ 238
             +   AIRHLVA+AV  L    V+++D  G+LL     +  +ME     +  +   A +
Sbjct: 177 EPQQVRAIRHLVASAVNGLKPQRVSIVDEAGQLLADGSASGEQMEGATSDERRA---AFE 233

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
             +   I   +++ +G    R  V A+ + +        +DP+ +V RS +  +++  + 
Sbjct: 234 KRMRHQIEGIVSSVVGSGRARVQVSADFDYNKITQTSDTFDPEGRVLRSSQTREES--AA 291

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
           TS  +  VTV   +P  +  +    R +  + K EE +NYEI+  +     +  ++ RLS
Sbjct: 292 TSAADGQVTVNNELPGANQGQGAGARDV--SKKSEETNNYEISRVTKTEVTEAGRVNRLS 349

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           +AV+V+     +  G      +    L  I  +V +A G + +RGD I + ++ F E   
Sbjct: 350 VAVLVDGAYTKDDKGELVYAERSKEQLDRIAALVRSAIGFDQKRGDQIEVVNLKFAEAPQ 409

Query: 419 FNSGTVQVSFMDILSRHFATVIN----ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
                     M +       ++N     ++FL+G L+V F+ +  L +   +   +  E 
Sbjct: 410 IEKLPEPAGLMGMFQFTKDDIMNMIQLGVMFLLG-LVVLFMVIRPLVK-RVLAAEQTPEA 467

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
            G           A+  G +P   I +D         S    +++   V  QS  R+  +
Sbjct: 468 AGL---------PALADGTVP--QIGVDGQPVAPGMPSMIDIAQVQGQVHAQSVHRVGEL 516

Query: 535 IEINEERFAKILRKW 549
            E N    A I+R+W
Sbjct: 517 AERNPNETAAIVRQW 531


>gi|86748397|ref|YP_484893.1| flagellar MS-ring protein [Rhodopseudomonas palustris HaA2]
 gi|86571425|gb|ABD05982.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris HaA2]
          Length = 532

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 150/557 (26%), Positives = 256/557 (45%), Gaps = 41/557 (7%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +  LL F K    LG  R++ + +V +  +  F      V+ P    LY  L V D + I
Sbjct: 1   MQSLLGFLKG---LGAARVMAMIAVTMALLGFFAFVIMRVSQPQMTTLYTDLSVEDSSSI 57

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    I F + ++G+ + VP   V + R+ LA +G        GYE+FDK ++ G T
Sbjct: 58  IKELERQAIPFEMRNDGAILMVPKDKVTRLRMKLA-EGGLPKGGGVGYEIFDKSDALGTT 116

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
           SF+Q I  +RALEGE++RTI++I  + AARVH+V+P+   F +    P+AS+++R     
Sbjct: 117 SFVQNINHLRALEGELSRTIRAIDRVQAARVHLVLPERPLFSRETPEPSASIVLRVRGAL 176

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEM 243
             +   AIRHLVA+AV  L    V+++D  G+LL       N    +    +    E  M
Sbjct: 177 EPQQVRAIRHLVASAVNGLKPQRVSIVDEGGQLLADGSASANAADGAAGDERRTSFEKRM 236

Query: 244 --NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
              I   +++ +G    R  V A+ + +        +DP+ +V RS +  ++  +++TS 
Sbjct: 237 RNEIEGIVSSVVGSGRARVQVTADFDYNKITQTSDKFDPEGRVLRSSQTREE--QAQTSA 294

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKK-EEQSNYEINTKSIATTHDNYKLERLSIA 360
            +  VTV   +P     + P      +  KK EE +NYEI+  +     +  ++ RLS+A
Sbjct: 295 ADGQVTVNNELP---GNQAPGGAGARDQSKKSEETNNYEISRVTKTEVTEAGRVNRLSVA 351

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           V+V+     +  G      +    L  I  +V +A G + +RGD I + ++ F E     
Sbjct: 352 VLVDGSYTKDEKGELVYAERPKEQLDRIAALVRSAIGFDQKRGDQIEVVNLRFAEAPQVE 411

Query: 421 S--------GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
                    G +Q +  DI++     +I   V  V  L+V F+ +  L            
Sbjct: 412 KLPEPAGLLGMLQFTKDDIMN-----MIQLGVMFVLGLVVLFMVIRPLV----------- 455

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
               K +L+  P S A     + + ++    S+    +   ++ +++   V  QS  R+ 
Sbjct: 456 ----KRVLASDPASEASGLPALADGSLPQIGSDGQAGTSMIDI-AQVQGQVHAQSVHRVG 510

Query: 533 HMIEINEERFAKILRKW 549
            + E N    A I+R+W
Sbjct: 511 ELAERNPNETAAIVRQW 527


>gi|114319870|ref|YP_741553.1| flagellar M-ring protein FliF [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226264|gb|ABI56063.1| flagellar M-ring protein FliF [Alkalilimnicola ehrlichii MLHE-1]
          Length = 580

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 132/437 (30%), Positives = 218/437 (49%), Gaps = 44/437 (10%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +DQL   F    ++ R   L LA V+L  +   +    +   P Y  L+ +L+  D   +
Sbjct: 38  MDQLEGLFGGRQNVMR---LGLAVVLLFTVAAGVLLYLWAQEPSYRTLFSELDDQDAAAV 94

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L E  I +R+ +   ++ VPS  V  AR+ LAA+GLP  +   G+E+  + ++FG +
Sbjct: 95  IEQLEEQGIPYRLDERTGAVRVPSDQVHPARLQLAAEGLPRGT-GFGFEMLQEDSAFGTS 153

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----R 178
            FM+     RALE E+AR+I ++  + AARVH+ +P    F +   +P ASV++     R
Sbjct: 154 EFMEGARFDRALETELARSIGTLRQVDAARVHLALPRESVFVRDRRQPRASVVVNLAQGR 213

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL-SIVQAI 237
            +N    +  +AI H+VA++VP+L   +V+V+D  G+LLT +E      G+ L S     
Sbjct: 214 RLN---DEQVDAIVHMVASSVPDLAHENVSVVDERGRLLTRDE------GRGLASTAGQF 264

Query: 238 QHEIEMN------INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
           Q++ ++       I   LA  +G +  R+ V A L+   QQ  E +YDPDS+V RS  L 
Sbjct: 265 QYKTQVEETYVRRIEDLLAPLVGRNRVRAQVNASLDFSEQQRTEELYDPDSRVIRSEAL- 323

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKE----------EQSNYEIN 341
              Q   T Q   A      +P     + P    L+  +  E          E  NYEI 
Sbjct: 324 ---QGRRTQQGADAAM---GVPGALTNQPPGAGQLDGEEAPENPPPVDISSSETRNYEI- 376

Query: 342 TKSIATTHDNY-KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400
           ++++    D    ++R+S+AVVV++   T+  G +  +   D  +  IN +V  A G ++
Sbjct: 377 SRTLRQVRDPIGSIQRVSVAVVVDERITTDEEGNTVREPLSDEEMDRINALVQEAVGFDA 436

Query: 401 RRGDTITITSMDFLENQ 417
            RGD++ + +  FLE +
Sbjct: 437 ARGDSVNVVNAAFLEEE 453


>gi|304438472|ref|ZP_07398412.1| flagellar M-ring protein FliF [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304368555|gb|EFM22240.1| flagellar M-ring protein FliF [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 526

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 125/459 (27%), Positives = 225/459 (49%), Gaps = 33/459 (7%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           R R ++L S + + +++F  + ++ + P    L+  +E  D   ++  L E+ I + I +
Sbjct: 18  RQRYIMLGSALAILVLVFGLSFWYGSKPDMVPLFTDMETKDAGEVANQLRESKISYEIQE 77

Query: 79  N--GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136
           N  G++I VP++ V +AR++LA QGLP    N G+E+FD  +  G+T F   +  ++AL+
Sbjct: 78  NKSGTTILVPTANVHEARLNLAVQGLPHG--NKGFEIFDD-SKLGVTEFQNRVNYLQALQ 134

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS---VYKSAEAIRH 193
           GE+ RTI+ I  +  ARVHIV+P+   ++K     TAS+M+R + P      K  + I +
Sbjct: 135 GELTRTIEQIEAVDKARVHIVLPEDSLYKKEEKPATASIMLR-LKPHAELTKKEIKGIVN 193

Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKS---LSIVQAIQHEIEMNINKA 248
           L A ++  L   ++T++D TGK+L    ++ E+ +  K+   L + + +Q  IE  +   
Sbjct: 194 LAAHSIKGLTPENITIVDDTGKILNDPDDQDEKGLGAKTITQLEMTRKVQDNIEKKVQTL 253

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQRSETSQPESA 305
           L   LG     + V  EL+ D +      + P   D+ + RS +   ++    ++ P   
Sbjct: 254 LDQTLGEGRAFARVSVELDFDDRLTDRQTFTPVVDDAGIIRSQQDISESYNGSSTNPGGP 313

Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365
             V+ N+P   +++     + E   KKE   NYEIN +          + R+++AV+VN 
Sbjct: 314 AGVQSNVPGYVEQESNANAAYE---KKESTKNYEINEERQHVIASPGSIRRMTVAVLVND 370

Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425
                       Q + +S L    + VS+A GIN  RGDTI++  + F            
Sbjct: 371 ---------DVTQPQQESIL----RTVSSAAGINQTRGDTISVEPLPFSTEAADRRAAEL 417

Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
            +  D   R F   + A++ ++  ++   L     +RL 
Sbjct: 418 QAEKDRQDRIFYMQVGAVLLIIALIVAAILMYRRKKRLE 456


>gi|300693364|ref|YP_003749337.1| flif: flagellar biosynthesis protein, m-ring protein, belongs to
           the flif family [Ralstonia solanacearum PSI07]
 gi|299075401|emb|CBJ34696.1| FliF: Flagellar biosynthesis protein, M-ring protein, Belongs to
           the fliF family [Ralstonia solanacearum PSI07]
          Length = 611

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 141/482 (29%), Positives = 234/482 (48%), Gaps = 76/482 (15%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P+Y  LY  +  SD   I  AL + N+ +R +D GS+I VP + V +AR+ LAAQ
Sbjct: 66  LWSRTPNYGVLYSNVADSDGGAIIAALQQMNVPYRFADGGSAIMVPEANVHEARLKLAAQ 125

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP     +G+EL +    FG + F +++   RALEGE+ARTIQ++  + +ARVH+ +  
Sbjct: 126 GLPKGGL-AGFELMEN-QKFGTSQFAEQVNYQRALEGELARTIQAMQEVQSARVHLALSK 183

Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
              F +  A+P+ASV+++ + P         +AI HLV+++VPNL + +VTV+D +G+LL
Sbjct: 184 PSVFVREQAKPSASVLLK-LYPGRMLDRSQVQAIGHLVSSSVPNLPLANVTVVDQSGRLL 242

Query: 218 TANEMERNILG---KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQI 273
           +++  + N  G     L+ V+ I+      I   L   LG DN R+ V A++++D T+Q+
Sbjct: 243 SSS-FQDNASGLDPTQLNYVRDIEQGYIKRIEAILGPVLGEDNVRAQVTADVDLDNTEQM 301

Query: 274 REIV---YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE--- 327
            E      DP + V RS   S+  Q    +Q         N P  + R +P   +     
Sbjct: 302 AETYRPNQDPSNGVVRSTHTSESTQNKAGAQ-GGVPGALSNQPPSAPRMLPTAPAPASQQ 360

Query: 328 -----------------------------NTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
                                         +  ++   NYE++     T      + RLS
Sbjct: 361 AAAGQNGQNGQNGQQQAAAATGQTAANGVESSARDTTINYEVDKTVRRTRAAVGTVRRLS 420

Query: 359 IAVVVN---KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           +AVVVN    G+  + L         D+ + ++N +V  A G +++RGD++ + +  F  
Sbjct: 421 VAVVVNYRADGKAWKPLS--------DAEMVKLNALVKDAVGYDAKRGDSVNVVNSQF-- 470

Query: 416 NQLFNSGTVQVSFMDI-LSR-----HFATVINALVF---LVGTLLVTFLGLHALRRLHNI 466
                SGT+ V+  D+ L +     H+A  I A  +    +G L++ F  +  L R  N 
Sbjct: 471 -----SGTLPVAKDDLPLWKQPEMIHYA--IQAAKYGALAIGFLILVFAVIRPLIRSMNK 523

Query: 467 DD 468
            D
Sbjct: 524 KD 525


>gi|311279120|ref|YP_003941351.1| flagellar M-ring protein FliF [Enterobacter cloacae SCF1]
 gi|308748315|gb|ADO48067.1| flagellar M-ring protein FliF [Enterobacter cloacae SCF1]
          Length = 556

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 122/401 (30%), Positives = 199/401 (49%), Gaps = 41/401 (10%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  SP Y  L+  L   D   I   L + NI +R +D+G +I VP+  V + R+ LA QG
Sbjct: 45  WAKSPDYRTLFSNLSDQDGGAIVTQLQQMNIPYRFADSGGAIEVPADKVHELRLRLAQQG 104

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  +  ARVH+ MP  
Sbjct: 105 LPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKGARVHLAMPKP 162

Query: 162 GSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
             F +    P+ASV +     RA++        A+ HLV++AV  L  G+VT++D  G L
Sbjct: 163 SLFVREQKLPSASVTLNLEPGRALDEG---QIAAVVHLVSSAVAGLPPGNVTLVDQAGHL 219

Query: 217 LT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LT +N   R++    L     ++  I+  I   L+  +G  N  + V A+LN D ++  E
Sbjct: 220 LTQSNTGARDLNDAQLKYASDVEGRIQRRIETILSPIVGNGNVHAQVTAQLNFDNKEQTE 279

Query: 276 IVYDPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMP-HVSDRKVPLPRSLENTDK 331
             Y P+    +++  S+    SE   +  P        N P    +  +  P + +N  +
Sbjct: 280 EQYRPNGDSSQAVLRSRQVNESEQIGSPYPGGVPGALSNSPAPAPNAPISTPPANQNNGQ 339

Query: 332 KE----------------EQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGRLTE--VL 372
           ++                E SNYE++ ++I  T  N   ++RLS+AVVVN   L +   L
Sbjct: 340 QQTTSTTNASGPRNTSRNETSNYEVD-RTIRHTKTNIGDVQRLSVAVVVNYKNLPDGKPL 398

Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
             +ADQ      + +I  +   A G + +RGDT+ + +  F
Sbjct: 399 PLTADQ------MKQIEDLTREAMGYSDKRGDTLNVVNSQF 433


>gi|163783983|ref|ZP_02178948.1| Flagellar M-ring protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880743|gb|EDP74282.1| Flagellar M-ring protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 522

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 119/393 (30%), Positives = 208/393 (52%), Gaps = 32/393 (8%)

Query: 41  FFVNS----PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIH 96
           FF+ S     +Y  LY  L   D  ++   L E  I +++  NGS I VP   V   R+ 
Sbjct: 39  FFIYSLSSKENYAVLYTNLSPEDAGQVLTVLQEEKIPYKVEGNGSIILVPKDKVYDVRLK 98

Query: 97  LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHI 156
           LA++G+PS S+  G+E+FD+    G+T F + I  +RALEGE+ RTI+ ++ ++ A+V+I
Sbjct: 99  LASKGIPSGST-VGFEIFDE-PKMGITQFQENINYIRALEGELERTIRQLNAVIDAKVNI 156

Query: 157 VMPDMGSFRKIGARPTASVMIRAINPS---VYKSAEAIRHLVAAAVPNLDMGDVTVLDST 213
            MP    F +   +P ASV+I+ + P      +  +AI  LV+ AVP L   +VTV D+ 
Sbjct: 157 AMPKESIFAREEDQPKASVLIK-LAPGKDLTPEQVKAIVFLVSRAVPKLKPENVTVADNR 215

Query: 214 GKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ 271
           G++L+    E E     K+L + + ++ +IE N+   L+  LG D  +  V A + ++T 
Sbjct: 216 GRVLSDVLEETETAKADKTLQLKRKLERQIERNVQSMLSKALGSD--KVVVRATVEVETG 273

Query: 272 QI--REIVYDPDSKV---ERSIRLS-KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRS 325
           Q+  ++ +YDPD      ER I+   K  Q+SE   P ++  V   M    D      R 
Sbjct: 274 QLHQKDELYDPDKVAIVSERRIKEEVKTKQKSEIGPPGTSTNVPPIMDTGQD------RY 327

Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQG-----K 380
           L    K++   NY+++   I  +   +K++++S+ V+++ G+  E+  ++ +       +
Sbjct: 328 LVEKKKEDRTRNYDVSKSIINKSQPIFKIKKVSVGVLID-GKYQEIKDKNGNVSYKFIPR 386

Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
               L +  +++ +A G + +RGD +TI S+ F
Sbjct: 387 SKEELKQYEELIKSAIGFDPKRGDKVTIVSVPF 419


>gi|91978309|ref|YP_570968.1| flagellar MS-ring protein [Rhodopseudomonas palustris BisB5]
 gi|91684765|gb|ABE41067.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris BisB5]
          Length = 532

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 125/414 (30%), Positives = 203/414 (49%), Gaps = 10/414 (2%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +  LL F K    LG  R++ + +V +  +  F      V+ P    LY  L V D + I
Sbjct: 1   MQSLLGFLKG---LGAARVMAMIAVTVALLGFFAFVIMRVSQPQMTTLYTDLSVEDSSSI 57

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    I F + + G+++ VP   V + R+ LA +G        GYE+FDK ++ G T
Sbjct: 58  IKELERQAIPFEMRNEGTTLMVPKDKVTRLRMKLA-EGGLPKGGGVGYEIFDKSDALGTT 116

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
           SF+Q I  +RALEGE+ARTI++I  I  ARVH+V+P+   F +    P+AS+++R     
Sbjct: 117 SFVQNINHLRALEGELARTIRAIDRIQQARVHLVLPERPLFSRETPEPSASIVLRVRGAL 176

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEM 243
             +   AIRHLVA+AV  L    V+++D  G+LL       N    +    +    E  M
Sbjct: 177 EPQQVRAIRHLVASAVNGLKPQRVSIVDEGGQLLADGSASANAADGAAGDERRTSFEKRM 236

Query: 244 --NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
              I   +++ +G    R  V A+ + +        +DP+ +V RS +  ++  +S+TS 
Sbjct: 237 RNEIEGIVSSVVGSGRARVQVTADFDYNKITQTSDKFDPEGRVLRSSQTREE--QSQTSA 294

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
            +  VTV   +P    +    PR  + + K EE +NYEI+  +     +  ++ RLS+AV
Sbjct: 295 ADGQVTVNNELPGNQGQAGTGPR--DQSKKSEETNNYEISRITKTEVTEAGRVNRLSVAV 352

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           +V+        G      +    L  I  +V +A G + +RGD I + ++ F E
Sbjct: 353 LVDGIYTKNEKGELVYAERPKEQLDRIAALVRSAIGFDQKRGDQIEVVNLKFAE 406


>gi|462109|sp|Q04954|FLIF_CAUCR RecName: Full=Flagellar M-ring protein
 gi|144247|gb|AAA66325.1| flagellar M-ring protein [Caulobacter crescentus CB15]
 gi|13422171|gb|AAK22889.1| flagellar M-ring protein [Caulobacter crescentus CB15]
          Length = 536

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 140/531 (26%), Positives = 255/531 (48%), Gaps = 38/531 (7%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            F+     + LY  L++ + + ++ AL +A I +    +GS+I VP   V  AR+ +A +
Sbjct: 17  MFMGKEPSELLYSNLDLKEASEVTQALDQAGIKYETKGDGSTIMVPRDKVASARLMVAGK 76

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GL SS S  GYE+FD  N+ G T F+Q++ R RAL+GE+ RTI+++ G+ + RVH+V+P 
Sbjct: 77  GLVSSGS-IGYEIFDTNNALGQTDFVQQLNRQRALQGELERTIKAMQGVNSVRVHLVLPK 135

Query: 161 MGSFRKIGARPTASVMI--RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +   +P+A+V I   +  PS      AI++LV+++VPN+    V V+D  GK L+
Sbjct: 136 RQLFEEDAEQPSAAVTIGVGSREPS-SDMVRAIQNLVSSSVPNMKAEKVAVIDQHGKTLS 194

Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKA----LAAFLGVDNFRSAVVAELNMDTQQIR 274
           A   E ++ GK   + Q  + E+E  I K     +   LG    R  V AEL+++    +
Sbjct: 195 APSDE-SLAGK---MAQDRKSEVEARIAKTVKDMIEGVLGPGKARVNVTAELDLNRVTTQ 250

Query: 275 EIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEE 334
           E  +DPD +V RS   ++ + +   +   + VT   N+P          +    T + + 
Sbjct: 251 EERFDPDGQVIRSESTTEASSQENKNDDNAGVTAAANVPGGQGANG-FQQLGSRTGQNDA 309

Query: 335 QSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY-------LAE 387
            +NYEI+     T  +   ++++++AV ++      V    A  GK  +Y       + +
Sbjct: 310 VTNYEISKSVTTTVQEPGTIKKIAVAVAIDG-----VSAPMAADGKPGAYTPRTAQEIQQ 364

Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447
           I ++V  A G ++ RGD + +T++ F + +  + G  +   +    ++   ++ A    V
Sbjct: 365 IEELVKTAVGFDAERGDQVRVTNIKFPQPE--DQGLEEQGLLAGFDKN--DIMRAAELGV 420

Query: 448 GTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQ 506
             ++   + L A+R  + N+     G++        PP++  VT        + +D S +
Sbjct: 421 LAVVALLILLFAVRPFIKNLSAPAPGQIALAGPSGGPPVTRLVTLADGTQQQVVVDQSGE 480

Query: 507 DIFSHSRNLQ--------SRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549
            I      +         ++I   V   S  R+   +E + +    ILR W
Sbjct: 481 PIALAGPPVSDIDQRIDIAKIEGQVKASSIKRVSEFVEKHPDESVAILRNW 531


>gi|327394264|dbj|BAK11686.1| flagellar M-ring protein FliF [Pantoea ananatis AJ13355]
          Length = 572

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 132/467 (28%), Positives = 216/467 (46%), Gaps = 63/467 (13%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P+Y  L+  L   D   I   L++ N+ +R +DNG ++ VP   V + R+ LA Q
Sbjct: 47  LWAKTPNYSVLFSNLSNEDGGAIVTQLTQMNVPYRFADNGGALMVPEDKVHELRLRLAEQ 106

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP    N G+EL DK   FG++ F +++   RALEGE+ARTI+S+  +  ARVH+ MP 
Sbjct: 107 GLPKGG-NVGFELLDK-EKFGISQFSEQVNYQRALEGELARTIESLGPVKTARVHLAMPK 164

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    P+ASV +     RA++       +AI H+V+++V  L  G+VTV+D +G 
Sbjct: 165 PTLFVREQKAPSASVTLTLQPGRALDEG---QIQAITHMVSSSVAGLPPGNVTVVDQSGH 221

Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT ++ + R++    L     ++   +  I   L   LG  N  + V A++N DT +  
Sbjct: 222 LLTRSDAVGRDLNDAQLKYAAEVEARYQQRIEAILNPILGQGNVHAQVTAQINFDTSEQT 281

Query: 275 EIVYDPDSKVERSIRLSKDAQRSETS--------------QPESAVTVEQNMPHVSDR-- 318
           +  Y P+   + +   S+    SE S              QP  A T   N P+ +    
Sbjct: 282 DEKYQPNGDPKNASIRSQQTSTSEQSGSPYPGGVPGALSNQPAPANTAPVNAPNTNAANG 341

Query: 319 ---------------KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
                                S+    ++++  NYE++     T  +   ++RLS+AVVV
Sbjct: 342 QNANGQNNAANGQRTSTASASSVPTNSRRDDTVNYELDRTIRHTKMNVGDVQRLSVAVVV 401

Query: 364 NKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           N         R  D+GK     +  L +I  +   A G + +RGD++ +       N  F
Sbjct: 402 NY--------REDDKGKALALNEQQLKQIEDLTREAMGYSQQRGDSVNVV------NSQF 447

Query: 420 NSGTVQVSFMDILSRH--FATVINALVFLVGTLLVTFLGLHALRRLH 464
           N+    VS +    +   F  +I+A  +L+   LV F+      R H
Sbjct: 448 NTTEPTVSELPFWQQQSFFDQLISAGKWLL-VALVAFILYRKTVRPH 493


>gi|259907606|ref|YP_002647962.1| Flagellar basal-body M-ring protein [Erwinia pyrifoliae Ep1/96]
 gi|224963228|emb|CAX54712.1| Flagellar basal-body M-ring protein [Erwinia pyrifoliae Ep1/96]
 gi|283477448|emb|CAY73364.1| Flagellar M-ring protein FliF [Erwinia pyrifoliae DSM 12163]
          Length = 561

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 127/452 (28%), Positives = 217/452 (48%), Gaps = 46/452 (10%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           F+   P Y  L+  +   D   I   LS+ N+ +RI   G +I VP + V + R+ +A Q
Sbjct: 47  FWAKEPGYRVLFNNVSDEDGGAIVSQLSQMNVPYRIDTPGGAIMVPEAQVHEVRMKMAQQ 106

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   S  G+EL D+   FG++ F +++   RALEGE+ARTI+++  I  ARVH+ +P 
Sbjct: 107 GLPKGGS-VGFELLDQ-EKFGISQFSEQVNFQRALEGELARTIENLGPIQHARVHLAVPK 164

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +   +PTASV +           +  AI HL+++AV  L   +VT++D  G LLT
Sbjct: 165 PSMFVRDQKQPTASVNVTLAQGRTLDDGQVTAITHLISSAVSGLPAANVTLVDQRGNLLT 224

Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
            +     +    +     I+ + +  I + LA  +G  N R+ V A+L+   Q+  +  Y
Sbjct: 225 QSGTGA-LQSSQVKYTNEIEADYQQRIQRLLAPLVGDSNVRTQVTAQLDFTQQERTDEQY 283

Query: 279 DPDSKVER-SIRLSKDAQRSE-------------TSQPESAVTVEQNMP---------HV 315
            P+++ E+ +IR  + +Q ++             ++QP +  T     P         + 
Sbjct: 284 QPNAEREKMAIRSRQSSQAAQGNGRGAGGVPGALSNQPPTPATAPLTKPLNAPAANGKNA 343

Query: 316 SDRKVPLPRSLEN--TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373
           ++ K P    +     ++ +E +NYE++   I T      ++RLS+AVV+N        G
Sbjct: 344 NNEKTPAAGEVAQPYNNRNDETTNYELDRTLIHTKTSVGHIQRLSVAVVINH----MAQG 399

Query: 374 RSADQGKIDSY-LAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDIL 432
                G + +  LA IN +V  A G + +RGD+I I +  F       +G  +     + 
Sbjct: 400 AEGKPGPLPAAELARINTLVKEAIGYSEQRGDSINIVNSPF-------NGVAEEVMPPLW 452

Query: 433 SRH-FATVINALVFLVGTLLVTFLGLHALRRL 463
            +H F T+   ++ L   L++  +G    RRL
Sbjct: 453 QQHSFQTL---MMTLARYLVIAIIGWVMWRRL 481


>gi|30250023|ref|NP_842093.1| fliF; flagellar M-ring transmembrane protein [Nitrosomonas europaea
           ATCC 19718]
 gi|30139130|emb|CAD85994.1| fliF; flagellar M-ring transmembrane protein [Nitrosomonas europaea
           ATCC 19718]
          Length = 548

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 113/390 (28%), Positives = 197/390 (50%), Gaps = 20/390 (5%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  SP Y  LY  L   +   I  AL + N+ ++ S++G SI +P+S V + R+ LA Q
Sbjct: 48  LWSQSPDYRVLYASLSDQEGGAIIEALQKMNVPYQFSESGGSILIPASQVHEVRLRLAGQ 107

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP  +  SG+E+ +    FG + F++++   RALEGE++R+IQS+S +  ARVH+ +  
Sbjct: 108 GLPKGNL-SGFEILEN-QKFGSSQFLEQVNYQRALEGELSRSIQSLSAVQGARVHLAIAK 165

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
              F +   +P  SV++  ++P    S E   AI HL+++++P++ + +VTV+D  G LL
Sbjct: 166 PSVFTRERPQPRVSVLLN-LHPGRMLSTEQVSAIVHLISSSIPDMPVKNVTVVDQQGNLL 224

Query: 218 TA---NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           +    N+ E  +    L  VQ ++      I   L    G DN  + V A+++    +  
Sbjct: 225 SGQKDNQAETGLDPGQLKYVQDMEQNFVRRIEAILTPITGEDNVHAQVTADVDFSRIERA 284

Query: 275 EIVYDPDSKVER--SIRLSKDAQRSETSQPESAV--TVEQNMPHVSDRKVPLPRSLENTD 330
           E +Y P++      ++R  + ++    SQPE  V   +    P  ++  +   +S E   
Sbjct: 285 EEIYKPNNNPAEAAAVRSQQQSESVSISQPEGGVPGALSNRPPAPAEAPIEAKQSSEAAA 344

Query: 331 K-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS 383
           K       +E  +NYE++     T     ++ RLS AVV+N     +  G  A++     
Sbjct: 345 KTTPTDTRRESTTNYEVDKTISHTRQATGRINRLSAAVVINYRTKLDTEGNPANEPLSGE 404

Query: 384 YLAEINKIVSAATGINSRRGDTITITSMDF 413
            + +I  +V    G +  RGDT+T+T+  F
Sbjct: 405 EIEKITALVKQTIGFDETRGDTLTVTNSQF 434


>gi|254239470|ref|ZP_04932792.1| Flagella M-ring outer membrane protein precursor [Pseudomonas
           aeruginosa 2192]
 gi|126192848|gb|EAZ56911.1| Flagella M-ring outer membrane protein precursor [Pseudomonas
           aeruginosa 2192]
          Length = 598

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 137/566 (24%), Positives = 260/566 (45%), Gaps = 73/566 (12%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92
           + +  A   +   P Y  LY  L   D NR+  AL+ A+I +++  N  ++ V +  +G+
Sbjct: 52  VAIGFAVVLWSQQPDYKPLYGSLNGVDANRVVEALTAADIPYKVEPNSGALLVKADDLGR 111

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
           AR+ +A+ G+  + SN G+E+ DK  + G + FM+     R LEGE+ART+ S++ + AA
Sbjct: 112 ARMKVASAGVAPTDSNVGFEILDKEQALGTSQFMEATNYRRGLEGELARTVSSLNNVKAA 171

Query: 153 RVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDV 207
           RVH+ +P    F +   +P+ASV++     R++ PS      AI +LVA +VP LD   V
Sbjct: 172 RVHLAIPKSSVFVRDDRKPSASVLVELYPGRSLEPS---QVMAIVNLVATSVPELDKSQV 228

Query: 208 TVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE 265
           TV+D  G LL+  +   E  + GK     + ++  +   ++  L   LG   +++ V A+
Sbjct: 229 TVVDQKGNLLSDQQELSELTMAGKQFDFTRRMEGLLTQRVHNILQPVLGNGRYKAEVSAD 288

Query: 266 LNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPH----------- 314
           ++    +    +Y+PD    RS + + + +R  +S P+       N P            
Sbjct: 289 VDFSAVESTSEMYNPDQPALRSEQRNNE-ERQNSSGPQGVPGALSNQPPGPASAPQQATA 347

Query: 315 --------------------VSDRKVPLPR-SLENTDKKEEQS-NYEINTKSIATTHDNY 352
                               + D K   P  +   TDK+++ + NYE++     T     
Sbjct: 348 SAPADYVAPGQPLKDANGQTIIDPKTGKPELAPYPTDKRDQTTRNYELDRSISYTKQQQG 407

Query: 353 KLERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
           +L RLS+AVV+ ++ ++    G  + Q      LA   ++V  + G ++ RGD++++ + 
Sbjct: 408 RLRRLSVAVVLDDQMKVDAKTGEVSHQPWSADELARFTRLVQDSVGYDASRGDSVSVINA 467

Query: 412 DFLENQLFNSGTV----QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR-LHNI 466
            F   Q     ++    Q  F DI+ +           ++G L +  L    LR  L NI
Sbjct: 468 PFAPAQAEEIDSIPFYSQPWFWDIVKQ-----------VLGVLFILVLVFGVLRPVLSNI 516

Query: 467 DDAKKGE--VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF-SHSRNLQSRINSYV 523
               KG+   GG        +  +   G + +D +++   +  +  S +    +++N+  
Sbjct: 517 TGGGKGKSLAGGGGRDGDLALGESGLEGSLADDRVSIGGPSSILLPSPTEGYDAQLNA-- 574

Query: 524 SKQSDLRLLHMIEINEERFAKILRKW 549
                  + +++  +  R A+++++W
Sbjct: 575 -------IKNLVAQDPGRVAQVVKEW 593


>gi|197104328|ref|YP_002129705.1| flagellar M-ring protein FliF [Phenylobacterium zucineum HLK1]
 gi|196477748|gb|ACG77276.1| flagellar M-ring protein FliF [Phenylobacterium zucineum HLK1]
          Length = 548

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 138/515 (26%), Positives = 232/515 (45%), Gaps = 31/515 (6%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110
           LY  L++ +   I+ AL +A I + +  +GS+I V    V   R+ L+++GLP++ S  G
Sbjct: 44  LYSNLDLKEAGSITQALDQAGIKYEVKGDGSTILVGRDKVAATRLMLSSRGLPTAGS-VG 102

Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170
           YE+FD   + G T F+Q++ R RALEGE+ARTI+S+ GI +ARVH+V+P    F++   +
Sbjct: 103 YEIFDDAKALGQTDFVQQLNRQRALEGELARTIRSLDGITSARVHLVLPKRQLFQEEAEQ 162

Query: 171 PTASVMI----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI 226
           P+ASV I    RA +P   +   AI++L+A AVPNL    VTV+D   K L+  +    +
Sbjct: 163 PSASVNIGVGGRAPSPEQVR---AIQNLIAGAVPNLRPDRVTVVDQHAKTLSGGDT--GM 217

Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVER 286
             ++ S    ++  I   +   +   +G    R  V AEL +    +++  +DPD +V R
Sbjct: 218 AAEADSRKSEVEQRIAKQVKNLIEGVVGPGKARVNVSAELELARVTVQQETFDPDGQVIR 277

Query: 287 SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346
           S   + +  R           V  N+   +            + ++E  +NYEI+     
Sbjct: 278 SESTTDENSRENQEDGAGQAGVAGNL-PGAAALGGGGLVGSQSGRQESTTNYEISKTVRT 336

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE----INKIVSAATGINSRR 402
              +  +++RLS+AV V+       +G     G      AE    I ++V  A G N  R
Sbjct: 337 EVQEPGQVKRLSVAVAVDG---VTAIGADGQPGAYTPRTAEEMQRIEQLVRTAVGFNQDR 393

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN-ALVFLVGTLLVTFLGLHALR 461
           GD +++ ++ F               M          +   ++ +VG L++ F+    L+
Sbjct: 394 GDQVSVINVRFPTPDTVGGVEAANPLMGFDKNDIMRAVEIGVMAIVGILMLIFVARPLLK 453

Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ----- 516
                            ++  P ++  VTT       IA D + Q       + +     
Sbjct: 454 SATGGGGGGL-----PMMMGGPQVTRVVTTADGQPMQIAADGTAQLALPGPGHTELESKI 508

Query: 517 --SRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549
             +RI   V   S  R+   +E + E    ILR W
Sbjct: 509 DMARIEGQVKASSVKRVAEFVEKHPEESVAILRSW 543


>gi|313673744|ref|YP_004051855.1| flagellar m-ring protein flif [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312940500|gb|ADR19692.1| flagellar M-ring protein FliF [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 554

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 129/454 (28%), Positives = 219/454 (48%), Gaps = 35/454 (7%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           ++ N P Y  L+  L   D   +   L    I + + D+G +I VP+  V + RI LA +
Sbjct: 41  YWANKPVYKILFANLSQEDAAEVVAKLKAKKIPYNLKDSGKTIEVPAKDVYETRIELAKE 100

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           G+P      G+ELFDK  SFG+T F Q +   RAL+GE++RTI ++  +  ARVH+ +P 
Sbjct: 101 GIPKGGG-VGFELFDKT-SFGITEFAQNVNYQRALQGELSRTISTLEEVEEARVHLTLPK 158

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F        A+V+++            +AI  LV  AV  L + +V ++D+ G LL+
Sbjct: 159 DKLFITEDGEAKAAVVLKLKKGETLNRDKVKAIASLVVGAVKGLKIQNVQIVDTQGNLLS 218

Query: 219 ANEMERNI----LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
            +  E N+        L   + ++  I   IN  LA  LG +N  + V AE++ D ++I 
Sbjct: 219 ESLNEENLPYVKTQTQLEYQKKVEKIISSKINSLLATTLGENNAVAQVTAEIDFDKKEIN 278

Query: 275 EIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNM--PHVSDRKVPLPRSLENTDKK 332
           +  +D +  V RS +  +   ++  + P+    VE N+  P++    V    +     K 
Sbjct: 279 KEEFDQNP-VLRSSQTIEIESKNTPNTPQGQPGVEPNLAEPNIQQNGVNSTYT-----KN 332

Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVN---------KGRLTEVLGRSADQGKIDS 383
           EE  N+EI             ++RL+IAVVVN         K  +T+ + R+ ++     
Sbjct: 333 EETQNFEIGKTVTKEEKSIGSIKRLTIAVVVNDKAEIVKEGKKEVTKYVPRTKEE----- 387

Query: 384 YLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINAL 443
            L +I  +V+ A G + +RGD I +T++ F  +Q+  S  ++   M+ L    +  +  L
Sbjct: 388 -LDKIKGLVAKAAGFDEKRGDQIEVTNVSFDTSQMSESKLLEKEKMNELIIQISKYVMVL 446

Query: 444 VFLVGTLLVTFLGLHA-LRRLHNIDDAKKGEVGG 476
           V     LL  FL +   +++L +I + K GE+  
Sbjct: 447 VMF---LLFYFLVIRPIMKKLGDIKETKSGELAA 477


>gi|295097226|emb|CBK86316.1| flagellar basal-body M-ring protein/flagellar hook-basal body
           protein (fliF) [Enterobacter cloacae subsp. cloacae NCTC
           9394]
          Length = 511

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 130/467 (27%), Positives = 222/467 (47%), Gaps = 37/467 (7%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           F+   P Y  L+  +   D   I   LS+ N+ +RI   G +I VP   V + R+ LA Q
Sbjct: 2   FWAKEPGYRVLFSNISDEDGGAIVAQLSQMNVPYRIDAPGGAILVPEGQVHEVRMKLAQQ 61

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   S  G+EL DK   FG++ F +++   RALEGE+ARTI+++  I +ARVH+  P 
Sbjct: 62  GLPKGGS-VGFELLDK-EKFGISQFSEQVNYQRALEGELARTIENLGPIRSARVHLATPK 119

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +   +PTASV +  I        +  AI HL+++AV  L   +VT++D  G+LLT
Sbjct: 120 QTMFVREQKQPTASVTVNLIQGRTLDEGQVIAITHLISSAVTGLTAENVTIVDQRGELLT 179

Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
            + + R +    L     I+ + +  I + LA  +G  N R+ V A+++   Q+  +  Y
Sbjct: 180 QSGL-RGLQTSQLKYTSEIESDYQQRIQRILAPLVGSKNIRAQVTAQIDFTQQEQTQEQY 238

Query: 279 DPDSKVERSIRLSKDAQRSE--------------TSQPESAVTVEQNMP------HVSDR 318
            P++  ++ +  S+   +SE              T+QP +  T     P        S  
Sbjct: 239 QPNADPQKMVIRSRQTSQSEQGNGRGNGGVPGALTNQPPAPATAPLTQPLDKPAAQTSTA 298

Query: 319 KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ 378
                RS    +  +E +N+E++       +   +++RLS+AVV+N   L +  G     
Sbjct: 299 GTGNDRSQPYNNHNDETTNFEVDRTLTHIKNAMGRIDRLSVAVVIN--HLPQ--GAEGKP 354

Query: 379 GKI-DSYLAEINKIVSAATGINSRRGDTITITSMDF--LENQLFNSGTVQVSFMDIL--- 432
           G + ++ L  IN +V  A G  + RGD++ I +  F  +E +       Q  F  ++   
Sbjct: 355 GPLSEAELNRINALVKEAVGYTASRGDSVNILNSPFNGVEEEELPPFWKQDKFYQLMMAI 414

Query: 433 SRHFATVINALVFLVGTLLVTFLGLH--ALRRLHNIDDAKKGEVGGK 477
           +R+    I A V     +   ++     +LRR+    +A++ E+  +
Sbjct: 415 ARYLVIAIIAWVMWRKLVHPAWIRHQETSLRRMEMEKEARQEELAAR 461


>gi|292489162|ref|YP_003532049.1| flagellar M-ring protein FliF [Erwinia amylovora CFBP1430]
 gi|292900280|ref|YP_003539649.1| flagellar M-ring protein [Erwinia amylovora ATCC 49946]
 gi|291200128|emb|CBJ47254.1| flagellar M-ring protein [Erwinia amylovora ATCC 49946]
 gi|291554596|emb|CBA22238.1| Flagellar M-ring protein FliF [Erwinia amylovora CFBP1430]
 gi|312173321|emb|CBX81576.1| Flagellar M-ring protein FliF [Erwinia amylovora ATCC BAA-2158]
          Length = 561

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 135/480 (28%), Positives = 230/480 (47%), Gaps = 52/480 (10%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           SL  +  L+L       I + +A  F+   P Y  L+  +   D   I   LS+ N+ +R
Sbjct: 22  SLRNSPKLLLPIAAAAAISVMIALMFWAKEPGYRVLFNNISDEDGGAIVSQLSQMNVPYR 81

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135
           I   G +I VP + V + R+ +A QGLP   S  G+EL D+   FG++ F +++   RAL
Sbjct: 82  IDTAGGAIMVPEAQVHEVRMKMAQQGLPKGGS-VGFELLDQ-EKFGISQFSEQVNFQRAL 139

Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEA 190
           EGE+ARTI+++  I  ARVH+ +P    F +   +PTASV +     RA++        A
Sbjct: 140 EGELARTIENLGPIQHARVHLAVPKPSMFVRDQKQPTASVNVTLAQGRALDDG---QVTA 196

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALA 250
           I HL+++AV  L   +VT++D  G LLT +     +    +     I+ + +  I + LA
Sbjct: 197 ITHLISSAVSGLPAANVTLVDQRGNLLTQSGTGA-LQTSQVKYTNEIEADYQQRIQRLLA 255

Query: 251 AFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVER-SIRLSKDAQRSE----------- 298
             +G  N R+ V A+L+   Q+  +  Y P+++ E+ +IR  + +Q ++           
Sbjct: 256 PLVGDSNVRTQVTAQLDFTQQERTDEQYQPNAEREKMAIRSRQSSQAAQGNGRGSGGVPG 315

Query: 299 --TSQPESAVTVEQNMP---------HVSDRKVPLPRSLEN--TDKKEEQSNYEINTKSI 345
             ++QP +  T     P         + ++ K P    +     ++ +E +NYE++   I
Sbjct: 316 ALSNQPPTPATAPLTKPLNAPAANGKNANNEKTPPAGEVAQPYNNRNDETTNYELDRTLI 375

Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY-LAEINKIVSAATGINSRRGD 404
            T      ++RLS+AVV+N        G     G + +  LA IN +V  A G + +RGD
Sbjct: 376 HTKTSVGHIQRLSVAVVINH----MAQGAEGKTGPLPAAELARINTLVKEAIGYSEQRGD 431

Query: 405 TITITSMDFLENQLFNSGTVQVSFMDILSRH-FATVINALVFLVGTLLVTFLGLHALRRL 463
           ++ I +  F       +G V+     +  +  F T+I   + L   L++  +G    RRL
Sbjct: 432 SVNIVNSPF-------NGVVEEVMPPLWQQQSFQTLI---MTLARYLVIAIIGWVMWRRL 481


>gi|115522990|ref|YP_779901.1| flagellar MS-ring protein [Rhodopseudomonas palustris BisA53]
 gi|115516937|gb|ABJ04921.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris BisA53]
          Length = 535

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 145/555 (26%), Positives = 248/555 (44%), Gaps = 34/555 (6%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++ L+ F K    LG  R++ + +V    I  F      V +P    L+  L V D + I
Sbjct: 1   MEGLVNFLKG---LGAARLMAMIAVTAALIGFFAFVILRVTTPQMTTLFTDLSVEDSSGI 57

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    I F I + GS I VP   V + R+ LA  GLP      GYE+FDK  + G T
Sbjct: 58  IKDLERQAIPFEIRNEGSVIMVPKDKVTRLRMKLAEAGLPKGG-GVGYEIFDKSEALGST 116

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
           SF+Q I  +RALEGE+ARTI++I  I AARVH+V+P+   F +    P+AS+++R     
Sbjct: 117 SFVQNINHLRALEGELARTIRAIDRIQAARVHLVLPERPLFSRETPEPSASIVLRVRGAL 176

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL----TANEMERNILGKSLSIVQAIQH 239
             +   AIRH+VA+AV  L    V+++D  G+LL      +     + G       A + 
Sbjct: 177 EPQQVRAIRHVVASAVNGLKPQRVSIVDEAGQLLADGAAGDPSTEGVTGDERR--AAFEK 234

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
            +   +   +++ +G    R  + A+ + +        +DP+ +V      S++   +  
Sbjct: 235 RMRNQVEAIVSSVVGTGRARVQLTADFDYNKITQTSDKFDPEGRV-LRSSQSREESSATL 293

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           +  +  VTV   +P          R  + + K EE +NYEI+  +     +  ++ R+S+
Sbjct: 294 NPTDGQVTVNNELPGAQGGAGAAAR--DQSKKSEETNNYEISRVTKTEVTEVGRVNRVSV 351

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL- 418
           AV+V+        G    Q +    L  I  +V +A G + +RGD + I ++ F E    
Sbjct: 352 AVLVDGLYNKNDKGELVYQERSKEELDRIAALVRSAIGFDQKRGDQVEIVNLRFAEGPAV 411

Query: 419 --FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476
              N  T  +  +         VI   V ++  ++V F+ +  L R              
Sbjct: 412 VPINEPTGILGMLKFTKDDVMYVIELGVMMLLGMVVIFMVIRPLVR-------------- 457

Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL--QSRINSYVSKQSDLRLLHM 534
             IL+  P S      L  +  +++ +  Q + +   ++   +++   V  QS  R+  +
Sbjct: 458 -RILAAEPGSPTALPALT-DGTVSVGADGQPLPTPGPSMIDIAQVQGQVHAQSVHRVGEL 515

Query: 535 IEINEERFAKILRKW 549
            + N    A I+R+W
Sbjct: 516 ADRNPNETAAIIRQW 530


>gi|192289867|ref|YP_001990472.1| flagellar MS-ring protein [Rhodopseudomonas palustris TIE-1]
 gi|192283616|gb|ACE99996.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris TIE-1]
          Length = 538

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 133/463 (28%), Positives = 223/463 (48%), Gaps = 15/463 (3%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +  LL F K G    R   +I  +V LV    F+  R  V+ P    LY  L V D + I
Sbjct: 1   MQNLLGFLK-GLGAARLMAMIAVTVALVGFFAFVIMR--VSQPQMTTLYTDLSVEDSSSI 57

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    I F + ++G+ + VP   V + R+ LA +G        GYE+FDK ++ G T
Sbjct: 58  IKELERQGIPFEMRNDGAILMVPKDKVTRLRMKLA-EGGLPKGGGVGYEIFDKSDALGTT 116

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
           SF+Q I  +RALEGE++RTI++I  + AARVH+V+P+   F +    P+AS+++R     
Sbjct: 117 SFVQNINHLRALEGELSRTIRAIDRVQAARVHLVLPERPLFSREAPEPSASIVLRVRGAL 176

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ--AIQHEI 241
             +   AIRHLVA+AV  L    V+++D  G+LL         +  + S  +  A +  +
Sbjct: 177 EPQQVRAIRHLVASAVNGLKPQRVSIVDEAGQLLADGSASGEQVEGATSDERRAAFEKRM 236

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
              I   +++ +G    R  V A+ + +        +DP+ +V RS +  +++  + TS 
Sbjct: 237 RNQIEGIVSSVVGSGRARVQVSADFDYNKITQTSDKFDPEGRVLRSSQTREES--AATSA 294

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
            +  VTV   +P  +  +    R +  + K EE +NYEI+  +     +  ++ RLS+AV
Sbjct: 295 ADGQVTVNNELPGANQGQGAGARDV--SKKSEETNNYEISRVTKTEVTEAGRVNRLSVAV 352

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           +V+        G      +    L  I  +V +A G + +RGD I + ++ F E      
Sbjct: 353 LVDGAYTKNDKGELVYAERPKEQLDRIAALVRSAIGFDQKRGDQIEVVNLKFAEAPQVEK 412

Query: 422 GTVQVSFMDILSRHFATVIN----ALVFLVGTLLVTFLGLHAL 460
                  M +       ++N     ++FL+G L+V F+ +  L
Sbjct: 413 LPEPAGLMGMFQFTKDDIMNMIQLGVMFLLG-LVVLFMVIRPL 454


>gi|170743231|ref|YP_001771886.1| flagellar MS-ring protein [Methylobacterium sp. 4-46]
 gi|168197505|gb|ACA19452.1| flagellar M-ring protein FliF [Methylobacterium sp. 4-46]
          Length = 539

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 122/420 (29%), Positives = 209/420 (49%), Gaps = 25/420 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +LD + +F       G  R+  + +V LV +  F      V+ P    LY  L + D   
Sbjct: 4   VLDLMAKF-------GPARLAAMGAVTLVLVGFFAFVILRVSRPELGVLYADLSLQDAGA 56

Query: 63  ISVALSEANIDFRI-SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           +   L    I +    D G +I  P + + + R+ LA +GLPS+    GYELFDK ++F 
Sbjct: 57  VIRDLEARGIRYETRGDLGQTILAPRADLPRLRMDLAGKGLPSAG-GVGYELFDKGDAFS 115

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
            T+F+Q +  +RA EGE+AR+I++I  + AARVH+V+P+   F +    P+A+++++   
Sbjct: 116 TTTFVQNVNHLRAQEGELARSIRAIGRVQAARVHLVIPEKRLFNRDRELPSAAIVLKLAG 175

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQA-I 237
                   A+RHLVA++V  L    ++++D  G+LL      +  + +LG  L   QA +
Sbjct: 176 DLDPGQVRAVRHLVASSVEGLKPERISIVDERGRLLADGAGRDDAQAVLG--LDERQASL 233

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           +  +   +   +A  +G    R  V AEL+    + R   +DP+S+V RS        RS
Sbjct: 234 EQRLRAQVEGIVAGIVGAGRARVQVAAELDPSRIESRSESFDPESRVVRS-----SQTRS 288

Query: 298 ETSQP----ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
           ETS      E+ V+V   +P   +       + E ++K EE +NYEI+  +    ++  +
Sbjct: 289 ETSASQGPGETGVSVGNELPGARE-TAQANGTRETSNKNEETTNYEISRVTRTEVNEGGR 347

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           ++RLS+AVV++        G+     +    L  I  +V  A G +  RGD + + ++ F
Sbjct: 348 IKRLSVAVVIDGSYQPGPDGKPVYAPRSQEELDRITALVRTAVGYDKGRGDQVEVANLRF 407


>gi|125525107|gb|EAY73221.1| hypothetical protein OsI_01094 [Oryza sativa Indica Group]
          Length = 575

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 122/395 (30%), Positives = 194/395 (49%), Gaps = 30/395 (7%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSS 105
           P Y  L+  L   D   I   LS  N+ ++ S+ G +I VP+  V   R+ LA QGLP  
Sbjct: 56  PDYKVLFSNLSDKDGGAIVAQLSTMNVPYKYSEGGGAILVPAERVHDVRLRLATQGLPKG 115

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
           S  +G+EL +  N FG+T F + +   R LEGE+ R+IQ++S + +ARVH+ +P+   F 
Sbjct: 116 SV-TGFELME-TNRFGVTQFQERLNFQRGLEGELTRSIQALSSVQSARVHLALPNQNGFF 173

Query: 166 KIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL----- 217
           +   +P+ASV++ ++ P  +        I HLVA++VP +    V+VLD TGKLL     
Sbjct: 174 REQQKPSASVLL-SLYPGRFLDRTQLAGIVHLVASSVPEMSPSAVSVLDDTGKLLSQSPD 232

Query: 218 TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM----DTQQI 273
           TA      I  + LS VQ I+ +    I   L   +G +N ++ V AE++      T + 
Sbjct: 233 TAAGSSGAIDAQQLSYVQQIEQQYTRRILDILEPVVGKNNVKAQVTAEVDFSQSEQTSEQ 292

Query: 274 REIVYDPDSKVERSIRLSKDAQRSETSQPESAV--TVEQNMPHVSDRKV----PLPRSLE 327
                 PDS   RS ++ + +  ++ +QP + V        P  S   +    P P +  
Sbjct: 293 HRPNQTPDSSAVRSQQVVESSGGTQGNQPPAGVPGAASNQPPQPSTAPINGANPAPTAGN 352

Query: 328 NTD------KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK- 380
                    K+E  +NYE++     T   +  ++R+S AVVVN   + E  G+ A Q K 
Sbjct: 353 GQQGQAAGSKRESITNYEVDKTVRVTRAGSGAIKRVSAAVVVNYQAIAEAAGK-APQAKA 411

Query: 381 -IDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
                + ++  +V    G N  RGD++ I +  FL
Sbjct: 412 FTPEQIEQMTALVRETIGYNKDRGDSVNIMNTQFL 446


>gi|269139487|ref|YP_003296188.1| flagellar biosynthesis/type III secretory pathway lipoprotein
           [Edwardsiella tarda EIB202]
 gi|267985148|gb|ACY84977.1| flagellar biosynthesis/type III secretory pathway lipoprotein
           [Edwardsiella tarda EIB202]
 gi|304559376|gb|ADM42040.1| Flagellar M-ring protein FliF [Edwardsiella tarda FL6-60]
          Length = 572

 Score =  164 bits (414), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 130/452 (28%), Positives = 225/452 (49%), Gaps = 54/452 (11%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           L+LAS + + I++ +A   +  +P Y  LY  +   D   I   L++ NI +R ++NG++
Sbjct: 35  LLLASAVAIAIVVVLA--LWARAPDYRVLYSNISDRDGGAIVTQLTQMNIPYRFANNGAT 92

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           + VP+  V   R+ LA QGLP   +  G+EL D+   FG++ F ++I   RALEGE+ART
Sbjct: 93  LMVPADKVYDTRLKLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQINYQRALEGELART 150

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAA 197
           I+++  +V+ARVH+ MP    F +   +P+ASV +     RA++        AI ++V++
Sbjct: 151 IETLGPVVSARVHLAMPKPSLFVREQKQPSASVTLTLEPGRALDDG---QINAIVYMVSS 207

Query: 198 AVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVD 256
           +V  L  G+VTV+D  G LLT  +   R++    L     ++  ++  I   L   LG  
Sbjct: 208 SVAGLPPGNVTVVDQFGHLLTQPDGTGRDLNAAQLKFTSEVEGRLQRRIETILQPMLGSG 267

Query: 257 NFRSAVVAELNMDTQQIREIVYDPDS-KVERSIR-------------LSKDAQRSETSQP 302
           N  + V A+L+  +++  +  Y P+    + +IR             L+     + +++P
Sbjct: 268 NVHAQVTAQLDFASREQTDEEYKPNQLPNQAAIRSQQISQSDQSGGQLNGGVPGALSNEP 327

Query: 303 ESAVTVEQNMPH----VSDRKVPLPR------------SLENTDKKEEQSNYEINTKSIA 346
               T   + P      + R  P P             S     +++E +NYE++     
Sbjct: 328 APPATGNIDKPRSAQGTAGRNTPTPSRSSAISNNGRLTSRNENIRRDETTNYEVDRTIRH 387

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
           T      +ERLS+AVVVN    T+    +  Q K+D    +IN +V  A G +  RGDT+
Sbjct: 388 TQARAGNIERLSVAVVVNYATDTKGKEIALSQEKMD----QINNLVREAMGFSQSRGDTL 443

Query: 407 TITSMDFLENQLFNSG-----TVQVSFMDILS 433
           ++ +  F  N + ++G       + SF+D+L+
Sbjct: 444 SVVNTPF--NSVEDNGGELPFWQKQSFIDLLT 473


>gi|161610775|ref|NP_946615.2| flagellar MS-ring protein [Rhodopseudomonas palustris CGA009]
          Length = 538

 Score =  164 bits (414), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 133/463 (28%), Positives = 223/463 (48%), Gaps = 15/463 (3%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +  LL F K G    R   +I  +V LV    F+  R  V+ P    LY  L V D + I
Sbjct: 1   MQNLLGFLK-GLGAARLMAMIAVTVALVGFFAFVIMR--VSQPQMTTLYTDLSVEDSSSI 57

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    I F + ++G+ + VP   V + R+ LA +G        GYE+FDK ++ G T
Sbjct: 58  IKELERQGIPFEMRNDGAILLVPKDKVTRLRMKLA-EGGLPKGGGVGYEIFDKSDALGTT 116

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
           SF+Q I  +RALEGE++RTI++I  + AARVH+V+P+   F +    P+AS+++R     
Sbjct: 117 SFVQNINHLRALEGELSRTIRAIDRVQAARVHLVLPERPLFSREAPEPSASIVLRVRGAL 176

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ--AIQHEI 241
             +   AIRHLVA+AV  L    V+++D  G+LL         +  + S  +  A +  +
Sbjct: 177 EPQQVRAIRHLVASAVNGLKPQRVSIVDEAGQLLADGSASGEQVEGATSDERRAAFEKRM 236

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
              I   +++ +G    R  V A+ + +        +DP+ +V RS +  +++  + TS 
Sbjct: 237 RNQIEGIVSSVVGSGRARVQVSADFDYNKITQTSDKFDPEGRVLRSSQTREES--AATSA 294

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
            +  VTV   +P  +  +    R +  + K EE +NYEI+  +     +  ++ RLS+AV
Sbjct: 295 ADGQVTVNNELPGANQGQGAGARDV--SKKSEETNNYEISRVTKTEVTEAGRVNRLSVAV 352

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           +V+        G      +    L  I  +V +A G + +RGD I + ++ F E      
Sbjct: 353 LVDGAYTKNDKGELVYAERPKEQLDRIAALVRSAIGFDQKRGDQIEVVNLKFAEAPQVEK 412

Query: 422 GTVQVSFMDILSRHFATVIN----ALVFLVGTLLVTFLGLHAL 460
                  M +       ++N     ++FL+G L+V F+ +  L
Sbjct: 413 LPEPAGLMGMFQFTKDDIMNMIQLGVMFLLG-LVVLFMVIRPL 454


>gi|295690740|ref|YP_003594433.1| cyclic nucleotide-binding protein [Caulobacter segnis ATCC 21756]
 gi|295432643|gb|ADG11815.1| cyclic nucleotide-binding protein [Caulobacter segnis ATCC 21756]
          Length = 532

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 127/403 (31%), Positives = 207/403 (51%), Gaps = 35/403 (8%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            F+     + LY  L++ + + ++ ALS+A I F    +GS+I VP   V  AR+ +A +
Sbjct: 17  MFMGKEPNELLYSNLDLKEASEVTQALSQAGIKFETKGDGSTIMVPRDKVASARLMVAGK 76

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GL SS S  GYE+FD  N+ G T F+Q++ R RAL+GE+ RTI+++ G+ + RVH+V+P 
Sbjct: 77  GLVSSGS-IGYEIFDGGNALGQTDFVQQLNRQRALQGELERTIKAMQGVNSVRVHLVLPK 135

Query: 161 MGSFRKIGARPTASVMI--RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +   +P+A+V I   +  PS      AI++LV++AVPN+    V V+D  GK L+
Sbjct: 136 RQLFEEDSEQPSAAVTIGVGSREPST-DMVHAIQNLVSSAVPNMKAEKVAVIDQHGKTLS 194

Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKA----LAAFLGVDNFRSAVVAELNMDTQQIR 274
           A   E ++ GK     Q  + E E  I K     +   LG    R  V AEL+++    +
Sbjct: 195 APSDE-SLAGKE---AQDRKVEAEARIAKTVKDMIEGVLGPGKARVNVTAELDLNRVTTQ 250

Query: 275 EIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEE 334
           E  +DPD +V RS   ++   +   ++  S  T   N+P           S    +  E 
Sbjct: 251 EERFDPDGQVVRSESTNESNSQENKNEDNSGATATANVPGQGAGGFQQLGSRAGAN--ES 308

Query: 335 QSNYEINTKSIATT-HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY-------LA 386
            +NYEI +KS+ TT  +   ++++++AV ++      V       GK  +Y       + 
Sbjct: 309 VTNYEI-SKSVKTTVQEPGTIKKVAVAVAIDG-----VTAPPGKDGKPGAYTPRSAQEIQ 362

Query: 387 EINKIVSAATGINSRRGDTITITSMDF-------LENQLFNSG 422
           +I ++V  A G ++ RGD + +T++ F       LE Q   SG
Sbjct: 363 QIEELVKTAVGFDAARGDQVKVTNIKFPQAEDQGLEKQGLLSG 405


>gi|256830792|ref|YP_003159520.1| flagellar M-ring protein FliF [Desulfomicrobium baculatum DSM 4028]
 gi|256579968|gb|ACU91104.1| flagellar M-ring protein FliF [Desulfomicrobium baculatum DSM 4028]
          Length = 537

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 122/406 (30%), Positives = 209/406 (51%), Gaps = 15/406 (3%)

Query: 36  FMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARI 95
           F    F++N   Y  LY +L   D   +   L +  I ++I+D+G++I VP  MV +ARI
Sbjct: 38  FFVMIFWMNKVDYRVLYSQLYQDDAASVVSYLQKEKIPYQITDSGATIMVPGDMVYEARI 97

Query: 96  HLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVH 155
            LA +G        G+ELFD+ NS G T+F+Q I   RAL+GE++RTI  +S + +ARVH
Sbjct: 98  KLAGEG-SLHGQGIGFELFDE-NSIGQTNFVQGINYQRALQGELSRTISELSEVESARVH 155

Query: 156 IVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDST 213
           +V+P+   F +  A P+A++M++         +  +AI +LV+ +V  +    +T+ DS 
Sbjct: 156 LVLPNKSLFVEEQAPPSAAIMLKLKGGRSLGAQQVQAIVNLVSTSVEGMSAEHITLADSR 215

Query: 214 GKLLTANEMERNILGKS---LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDT 270
           GK+L   + + +I G S   L    ++Q  +E  I + L   +G     + V A+L+ D 
Sbjct: 216 GKILYEPKTDTDIAGLSSTQLEYQTSMQRSLEQRIEQLLLPIVGPGRVIARVNADLDFDR 275

Query: 271 QQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD 330
             IR+ ++DP S V RS    K+ + S+ S      T + N    +DR      + + + 
Sbjct: 276 TTIRKEIFDPKSAVVRS--EVKNEEESKGSANVDGGTPDPNYQGENDRTA--SGTAQESV 331

Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINK 390
           +    +N++IN +          ++RLS+AV+V+   + +  G  A +      + +I +
Sbjct: 332 RTSSTTNFDINKEEQQIIAQVGSIKRLSVAVLVDGKYIQQQDGTYAFEPLNAEQMEQIRQ 391

Query: 391 IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHF 436
           +   A G +  RGD I ++S+ F E      G  Q   +D+ SR+F
Sbjct: 392 LSQRAVGFDDARGDAIEVSSISFGE----PVGAEQAPLLDVASRYF 433


>gi|15596298|ref|NP_249792.1| flagellar MS-ring protein [Pseudomonas aeruginosa PAO1]
 gi|107100552|ref|ZP_01364470.1| hypothetical protein PaerPA_01001577 [Pseudomonas aeruginosa PACS2]
 gi|116049030|ref|YP_792168.1| flagellar MS-ring protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296390533|ref|ZP_06880008.1| flagellar MS-ring protein [Pseudomonas aeruginosa PAb1]
 gi|12230924|sp|Q51463|FLIF_PSEAE RecName: Full=Flagellar M-ring protein
 gi|9947018|gb|AAG04490.1|AE004540_10 Flagella M-ring outer membrane protein precursor [Pseudomonas
           aeruginosa PAO1]
 gi|115584251|gb|ABJ10266.1| Flagella M-ring outer membrane protein precursor [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 598

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 136/566 (24%), Positives = 260/566 (45%), Gaps = 73/566 (12%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92
           + +  A   +   P Y  LY  L   D NR+  AL+ A+I +++  N  ++ V +  +G+
Sbjct: 52  VAIGFAVVLWSQQPDYKPLYGSLNGVDANRVVEALTAADIPYKVEPNSGALLVKADDLGR 111

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
           AR+ +A+ G+  + +N G+E+ DK  + G + FM+     R LEGE+ART+ S++ + AA
Sbjct: 112 ARMKVASAGVAPTDNNVGFEILDKEQALGTSQFMEATNYRRGLEGELARTVSSLNNVKAA 171

Query: 153 RVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDV 207
           RVH+ +P    F +   +P+ASV++     R++ PS      AI +LVA +VP LD   V
Sbjct: 172 RVHLAIPKSSVFVRDDRKPSASVLVELYPGRSLEPS---QVMAIVNLVATSVPELDKSQV 228

Query: 208 TVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE 265
           TV+D  G LL+  +   E  + GK     + ++  +   ++  L   LG   +++ V A+
Sbjct: 229 TVVDQKGNLLSDQQELSELTMAGKQFDFTRRMEGLLTQRVHNILQPVLGNGRYKAEVSAD 288

Query: 266 LNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPH----------- 314
           ++    +    +Y+PD    RS + + + +R  +S P+       N P            
Sbjct: 289 VDFSAVESTSEMYNPDQPALRSEQRNNE-ERQNSSGPQGVPGALSNQPPGPASAPQQATA 347

Query: 315 --------------------VSDRKVPLPR-SLENTDKKEEQS-NYEINTKSIATTHDNY 352
                               + D K   P  +   TDK+++ + NYE++     T     
Sbjct: 348 SAPADYVAPGQPLKDANGQTIIDPKTGKPELAPYPTDKRDQTTRNYELDRSISYTKQQQG 407

Query: 353 KLERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
           +L RLS+AVV+ ++ ++    G  + Q      LA   ++V  + G ++ RGD++++ + 
Sbjct: 408 RLRRLSVAVVLDDQMKVDAKTGEVSHQPWSADELARFTRLVQDSVGYDASRGDSVSVINA 467

Query: 412 DFLENQLFNSGTV----QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR-LHNI 466
            F   Q     ++    Q  F DI+ +           ++G L +  L    LR  L NI
Sbjct: 468 PFAPAQAEEIDSIPFYSQPWFWDIVKQ-----------VLGVLFILVLVFGVLRPVLSNI 516

Query: 467 DDAKKGE--VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF-SHSRNLQSRINSYV 523
               KG+   GG        +  +   G + +D +++   +  +  S +    +++N+  
Sbjct: 517 TGGGKGKSLAGGGGRDGDLALGESGLEGSLADDRVSIGGPSSILLPSPTEGYDAQLNA-- 574

Query: 524 SKQSDLRLLHMIEINEERFAKILRKW 549
                  + +++  +  R A+++++W
Sbjct: 575 -------IKNLVAQDPGRVAQVVKEW 593


>gi|258592505|emb|CBE68814.1| Flagellar basal body M-ring protein [NC10 bacterium 'Dutch
           sediment']
          Length = 539

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 142/530 (26%), Positives = 249/530 (46%), Gaps = 51/530 (9%)

Query: 4   LDQLLQFFK---SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           + ++++ FK    G  L    + +L     +  +L+M   F  + P    L+ +L  SD 
Sbjct: 5   ITKVVELFKQVWGGLGLTGRALTVLVGGGALTALLWMV--FSTHRPDMTTLFSQLNPSDA 62

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L    + +R+ D G+ I VPS++V + R+HLA +GLP      G+E+FD+  + 
Sbjct: 63  GAIVDELKSGKVSYRVVDGGTRILVPSAVVHEIRLHLATRGLPQGG-GVGFEIFDR-TTL 120

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           G T F+Q +   RAL+GE+ARTI  +  + AARVH+ +P    F +     TASV++  +
Sbjct: 121 GTTDFVQRLNYQRALQGELARTIGQLKEVTAARVHLALPQPSVFTEQEKPATASVVLN-L 179

Query: 181 NPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS--LSIVQ 235
            P    + E +R   HLV+++V  L+   +TV+D++GKL+      R   G +      +
Sbjct: 180 RPGARLTPEQVRGIVHLVSSSVEGLNADRITVVDTSGKLIARPAEGRLGAGSTGQFEAQE 239

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
           A++ E+E  +   L   LG +     V A+++  + +  E  +DP   ++   R + + Q
Sbjct: 240 AVEGELERRVRTMLEEILGPNKATVRVAAQMDFTSVERTEERFDPRGVIKSEQR-TTETQ 298

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
           +S T+ P +   V  N+P  +       +S   + K+ E   Y+++           +L+
Sbjct: 299 QSVTASPAAVAGVASNVPDQTATPSQSGQSTAKSTKEAETVQYDVSKVLERKVFSPGELK 358

Query: 356 RLSIAVVVN----------KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
           R+S+AV+V+           G   E + R +D+      L +I   V  A G ++ RGD 
Sbjct: 359 RVSVAVMVDGTYKPVPDGKGGERKEYVPRKSDE------LEKIKVAVKNAVGFSAARGDE 412

Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRH--FATVINALVFLVGTLLVTFLGLHAL--- 460
           + +    F  +        + + M+   R   + +++  ++  VG LLV   GL  L   
Sbjct: 413 VEVVEFPFDTSATEK----ERALMEEAERKAFWYSLVKPVLMGVGVLLVLVFGLRPLIRS 468

Query: 461 ---RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQD 507
              RRL   D       G  S+  P P  +A+ TG  P+   ALD ++ D
Sbjct: 469 LKERRLPTFDTP-----GMLSMSQPGP--TAIETG--PDQAPALDVASDD 509


>gi|85858817|ref|YP_461019.1| flagellar M-ring protein [Syntrophus aciditrophicus SB]
 gi|85721908|gb|ABC76851.1| flagellar M-ring protein [Syntrophus aciditrophicus SB]
          Length = 509

 Score =  163 bits (412), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 128/425 (30%), Positives = 206/425 (48%), Gaps = 45/425 (10%)

Query: 4   LDQLLQFF----KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           ++  L+F+    +S   L   R   L  V  + + +  A  +F N P Y  L+  L   D
Sbjct: 1   MNSFLRFYENLRQSFVELPPARKWSLLFVAGMTLSVLAAMVYFANRPEYKVLFSHLSSED 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
            + I   L E  I + I+  G +I VP+  V + R+ LA  GLP      G+E+FD+  +
Sbjct: 61  ASSILAKLQEKKISYEINSAGDTIFVPAEKVSELRLELAGSGLPQGG-GVGFEIFDQ-KT 118

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
            G T F Q++   RAL+GE+ RTI+ +  I ++RVHI +P    F     +PTASV ++ 
Sbjct: 119 LGATEFEQQLNYRRALQGELGRTIKGLEEIESSRVHIALPRESLFVSEEKKPTASVTLK- 177

Query: 180 INPSVYKSA---EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQA 236
           + P    S+   E I HLVA++V  L+ GDV ++D+ G +L+  + E  + G S S    
Sbjct: 178 LKPGRSLSSSQIEGIAHLVASSVEGLNAGDVIIVDNKGNILSKLKGESGLSGLSGS---- 233

Query: 237 IQHEIEMNINKALAA--------FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288
            Q E + N+ K  AA         +G       V A+L+    +  E  YDP+S V RS 
Sbjct: 234 -QIEFQRNLEKDTAARIQSLLENVVGQGKAVVRVAADLDFRMTEKTEESYDPESPVVRST 292

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           +  K +++S T             P  +D+           +K +E  NYEIN     T 
Sbjct: 293 Q--KQSEKSAT-------------PGKADQST-------GQEKLDEIINYEINKTVSKTV 330

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
               ++ +LSIAV+V+   + +  G+   Q +    +  I ++V  + G ++ RGD +T+
Sbjct: 331 MPVGEIRKLSIAVLVDGTYVKDKQGKEIYQPRSKKEIESIEELVRTSAGFSTARGDQVTV 390

Query: 409 TSMDF 413
           T+M F
Sbjct: 391 TNMPF 395


>gi|34498591|ref|NP_902806.1| flagellar M-ring protein [Chromobacterium violaceum ATCC 12472]
 gi|34104445|gb|AAQ60803.1| flagellar M-ring protein [Chromobacterium violaceum ATCC 12472]
          Length = 579

 Score =  163 bits (412), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 136/464 (29%), Positives = 227/464 (48%), Gaps = 43/464 (9%)

Query: 21  RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80
           +IL L ++  +   + + A     +P Y  L+  L   D  +++ AL + N+ +++ + G
Sbjct: 32  KILFLTALAAI-FAVVVGAVLLNRTPSYKILFSNLADRDGGQVTAALQQMNVPYQLGE-G 89

Query: 81  SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140
             ISVP+  V   R+ LAAQGLP +S   G+EL D    FG++ F +++   R++EGE+A
Sbjct: 90  GVISVPADKVYDVRLKLAAQGLPKASG-VGFELMDN-QKFGISQFAEQVNYQRSIEGELA 147

Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAA 198
           RTI++IS + +ARVHI  P    F +    PTASVM++     +    +   I HLV+++
Sbjct: 148 RTIEAISSVQSARVHIATPKQSVFVREQQSPTASVMLQLYPGRMLDGGQVAGILHLVSSS 207

Query: 199 VPNLDMGDVTVLDSTGKLLT--ANEMERNILG-KSLSIVQAIQHEIEMNINKALAAFLGV 255
           VPNL + +VT++D  G LL+  A   E + L  + L  V+ I+      I   L    G 
Sbjct: 208 VPNLPLKNVTIVDQDGNLLSKQAGPDENSGLDQRQLGFVRQIEEGYVKRIEDILEPIFGR 267

Query: 256 DNFRSAVVAELNM-DTQQIREIVYDPDSKVERSIRLSKDAQRSE---------------- 298
            N R+ V A ++  +T+Q  E  Y P+S    S   ++  Q SE                
Sbjct: 268 GNARAQVTANVDFSETEQTSE-TYRPNSSPNPSA--TRSQQISEKLVNGSANPTGVPGAL 324

Query: 299 TSQPESAVTVEQNMP--------HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
           ++QP SA +    +P        ++S   V    S   T +++  +NYE++     T   
Sbjct: 325 SNQPPSAASAPITLPPGAAPGTANLSGGSV----SASGTLQRDITTNYEVDKTIQHTKVP 380

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
              ++RLS AVVVN  R+ +  G           + +IN +V  A G NS RGDT+ + +
Sbjct: 381 TGVVKRLSAAVVVNYRRMPDKSGEMKPTPLTPQEVQQINNLVKEAMGYNSGRGDTLNVVN 440

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTF 454
             F +N      T+Q   +D +S +  +++   +  +  L + F
Sbjct: 441 AAFADNA--QPVTMQERVIDYVSGNGTSLVKYGLLGIAVLYLLF 482


>gi|152984140|ref|YP_001349624.1| flagellar MS-ring protein [Pseudomonas aeruginosa PA7]
 gi|150959298|gb|ABR81323.1| flagellar M-ring protein FliF [Pseudomonas aeruginosa PA7]
          Length = 597

 Score =  163 bits (412), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 132/493 (26%), Positives = 232/493 (47%), Gaps = 62/493 (12%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92
           + +  A   +   P Y  LY  L   D NR+  AL+ A+I +++  N  ++ V +  +G+
Sbjct: 52  VAIGFAVVLWSQQPDYKPLYGSLNGVDANRVVEALTAADIPYKVEPNSGALLVKADDLGR 111

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
           AR+ +A+ G+  + +N G+E+ DK  + G + FM+     R LEGE+ART+ S++ + AA
Sbjct: 112 ARMKVASAGVAPTDNNIGFEILDKEQALGTSQFMEATNYRRGLEGELARTVSSLNNVKAA 171

Query: 153 RVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDV 207
           RVH+ +P    F +   +P+ASV++     R++ PS      AI +LVA +VP LD   V
Sbjct: 172 RVHLAIPKSSVFVRDDRKPSASVLVELYPGRSLEPS---QVMAIVNLVATSVPELDKSQV 228

Query: 208 TVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE 265
           TV+D  G LL+  +   E  + GK     + ++  +   ++  L   LG   +++ V A+
Sbjct: 229 TVVDQKGNLLSDQQELSELTMAGKQFDFTRRMEGLLTQRVHNILQPVLGNGRYKAEVSAD 288

Query: 266 LNMDTQQIREIVYDPDSKVERS-IRLSKDAQRSE---------TSQPESAVTVEQ----- 310
           ++    +    +Y+PD    RS  R +++ Q S          ++QP    T  Q     
Sbjct: 289 VDFSAVESTSEMYNPDQPALRSEQRNNEERQNSSGPQGVPGALSNQPPGPATAPQQATAG 348

Query: 311 ---------------NMPHVSDRKVPLPR-SLENTDKKEEQS-NYEINTKSIATTHDNYK 353
                          N   + D K   P  +   TDK+++ + NYE++     T     +
Sbjct: 349 APADYVAPGQPLKDANGQTIIDPKTGKPELAPYPTDKRDQTTRNYELDRSISYTKQQQGR 408

Query: 354 LERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
           L RLS+AVV+ ++ ++    G  + Q      LA   ++V  + G ++ RGD++++ +  
Sbjct: 409 LRRLSVAVVLDDQMKVDAKTGEVSHQPWSADELARFTRLVQDSVGYDASRGDSVSVINAP 468

Query: 413 FLENQLFNSGTV----QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR-LHNID 467
           F   Q     ++    Q  F DI+ +           ++G L +  L    LR  L NI 
Sbjct: 469 FAPAQAEEIDSIPFYSQPWFWDIVKQ-----------VLGVLFILVLVFGVLRPVLSNIS 517

Query: 468 DAKKGEV---GGK 477
              KG+    GG+
Sbjct: 518 GGGKGKALADGGR 530


>gi|326319071|ref|YP_004236743.1| flagellar M-ring protein FliF [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323375907|gb|ADX48176.1| flagellar M-ring protein FliF [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 568

 Score =  163 bits (412), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 132/443 (29%), Positives = 212/443 (47%), Gaps = 35/443 (7%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSS 105
           P Y  L+  L   D   I   LS  N+ ++ S+ G +I VP+  V   R+ LA QGLP  
Sbjct: 56  PDYKVLFSNLSDKDGGAIVAQLSTMNVPYKYSEGGGAILVPAERVHDVRLRLATQGLPKG 115

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
           S  +G+EL +  N FG+T F + +   R LEGE+ R+IQ++S + +ARVH+ +P+   F 
Sbjct: 116 SV-TGFELME-TNRFGVTQFQERLNFQRGLEGELTRSIQALSSVQSARVHLALPNQNGFF 173

Query: 166 KIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL----- 217
           +   +P+ASV++ ++ P  +        I HLVA++VP +    V+VLD TGKLL     
Sbjct: 174 REQQKPSASVLL-SLYPGRFLDRTQLAGIVHLVASSVPEMSPSAVSVLDDTGKLLSQSPD 232

Query: 218 TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM----DTQQI 273
           TA      I  + LS VQ I+ +    I   L   +G +N ++ V AE++      T + 
Sbjct: 233 TAAGSGSAIDAQQLSYVQQIEQQYTRRILDILEPVVGKNNVKAQVTAEVDFSQSEQTSEQ 292

Query: 274 REIVYDPDSKVERSIRLSKDAQRSETSQPESAV--TVEQNMPHVSDRKV----PLPRSLE 327
                 PDS   RS ++ + +  ++ +QP + V        P  S   +    P P +  
Sbjct: 293 HRPNQTPDSSAVRSQQVVESSGGTQGNQPPAGVPGAASNQPPQPSTAPINGANPAPTAGN 352

Query: 328 NTD------KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK- 380
                    K+E  +NYE++     T   +  ++R+S AVVVN   + E  G+ A Q K 
Sbjct: 353 GQQGQAAGSKRESITNYEVDKTVRVTRAGSGAIKRVSAAVVVNYQAIAEAAGK-APQAKA 411

Query: 381 -IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATV 439
                + ++  +V    G N  RGD++ I +  FL   + N+  V++            +
Sbjct: 412 FTPEQIEQMTALVRETIGYNKDRGDSVNIMNTQFL---VDNTPAVELPLWK--QPEMIEL 466

Query: 440 INALVFLVGTLLVTFLGLHALRR 462
           + +L + VG  L   L L  L R
Sbjct: 467 VRSLGWPVGMSLFAALILLGLVR 489


>gi|218892935|ref|YP_002441804.1| flagellar MS-ring protein [Pseudomonas aeruginosa LESB58]
 gi|218773163|emb|CAW28975.1| Flagella M-ring outer membrane protein precursor [Pseudomonas
           aeruginosa LESB58]
          Length = 598

 Score =  163 bits (412), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 136/566 (24%), Positives = 260/566 (45%), Gaps = 73/566 (12%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92
           + +  A   +   P Y  LY  L   D NR+  AL+ A+I +++  N  ++ V +  +G+
Sbjct: 52  VAIGFAVVLWSQQPDYKPLYGSLNGVDANRVVEALTAADIPYKVEPNSGALLVKADDLGR 111

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
           AR+ +A+ G+  + +N G+E+ DK  + G + FM+     R LEGE+ART+ S++ + AA
Sbjct: 112 ARMKVASAGVAPTDNNVGFEILDKEQALGTSQFMEATNYRRGLEGELARTVSSLNNVKAA 171

Query: 153 RVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDV 207
           RVH+ +P    F +   +P+ASV++     R++ PS      AI +LVA +VP LD   V
Sbjct: 172 RVHLAIPKSSVFVRDDRKPSASVLVELYPGRSLEPS---QVMAIVNLVATSVPELDKSQV 228

Query: 208 TVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE 265
           TV+D  G LL+  +   E  + GK     + ++  +   ++  L   LG   +++ V A+
Sbjct: 229 TVVDQKGNLLSDQQELSELTMAGKQFDFTRRMEGLLTQRVHNILQPVLGNGRYKAEVSAD 288

Query: 266 LNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPH----------- 314
           ++    +    +Y+PD    RS + + + +R  +S P+       N P            
Sbjct: 289 VDFSAVESTSEMYNPDQPALRSEQRNNE-ERQNSSGPQGVPGALSNQPPGPASAPQQATA 347

Query: 315 --------------------VSDRKVPLPR-SLENTDKKEEQS-NYEINTKSIATTHDNY 352
                               + D K   P  +   TDK+++ + NYE++     T     
Sbjct: 348 SAPADYVAPGQPLKDANGQTIIDPKTGKPELAPYPTDKRDQTTRNYELDRSISYTKQQQG 407

Query: 353 KLERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
           +L RLS+AVV+ ++ ++    G  + Q      LA   ++V  + G ++ RGD++++ + 
Sbjct: 408 RLRRLSVAVVLDDQMKVDAKTGEVSHQPWSADELARFTRLVQDSVGYDASRGDSVSVINA 467

Query: 412 DFLENQLFNSGTV----QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR-LHNI 466
            F   Q     ++    Q  F DI+ +           ++G L +  L    LR  L NI
Sbjct: 468 PFAPVQAEEIDSIPFYSQPWFWDIVKQ-----------VLGVLFILVLVFGVLRPVLSNI 516

Query: 467 DDAKKGE--VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF-SHSRNLQSRINSYV 523
               KG+   GG        +  +   G + +D +++   +  +  S +    +++N+  
Sbjct: 517 TGGGKGKSLAGGGGRDGDLALGESGLEGSLADDRVSIGGPSSILLPSPTEGYDAQLNA-- 574

Query: 524 SKQSDLRLLHMIEINEERFAKILRKW 549
                  + +++  +  R A+++++W
Sbjct: 575 -------IKNLVAQDPGRVAQVVKEW 593


>gi|15606425|ref|NP_213805.1| flagellar M-ring protein [Aquifex aeolicus VF5]
 gi|6225356|sp|O67241|FLIF_AQUAE RecName: Full=Flagellar M-ring protein
 gi|2983628|gb|AAC07196.1| Flagellar M-ring protein [Aquifex aeolicus VF5]
          Length = 489

 Score =  163 bits (412), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 113/394 (28%), Positives = 205/394 (52%), Gaps = 33/394 (8%)

Query: 31  VPIMLF---MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPS 87
           +P++L      A  +++  +Y  LY  L   D+N +   L +  + ++IS +G +I VP 
Sbjct: 29  IPLLLLSLGAVALIYLSQENYTVLYTGLSPDDLNAVVTELDKEGVKYKISPDGRTIYVPE 88

Query: 88  SMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSIS 147
           ++  + R+ LAA+G+P      GYELFDK +   L+ F Q +   RA+EGE+A+TI S+ 
Sbjct: 89  NVARELRLKLAAKGVPRKGI-VGYELFDK-SGIVLSRFQQLVNFKRAIEGELAKTIMSLD 146

Query: 148 GIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLVAAAVPNLDM 204
            +  ARVHIV+P+   F +      ASV ++ + P    + E   AIR+LV+ +V NL  
Sbjct: 147 CVEFARVHIVLPEKSLFIREEEEAKASVFLK-LKPGCELTPEQVKAIRNLVSGSVENLKP 205

Query: 205 GDVTVLDSTGKLLTA---NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSA 261
             V V+D  G+ LTA    E + N     L + +  +  +E  + K L    G    +  
Sbjct: 206 SQVVVVDDKGRDLTAYLDEEFKTN--ASQLKVKREFEKSLERKLQKTLEEVFGYGKVKVN 263

Query: 262 VVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVP 321
           V AEL+  + + RE +YDPD  +   +   K  +R+ +++ +     + N+P  + R+  
Sbjct: 264 VSAELDFSSMKKREELYDPD--LTAVVSEQKKKERTTSTRAQGIPGTQANIPPATGRQ-- 319

Query: 322 LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI 381
                  T++KE  +NYE++ + I       K++R+S+ +V++K              K+
Sbjct: 320 -GGGELITERKESITNYEVSKREIYFEDKTIKVKRISVGLVIDK------------DVKV 366

Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           ++   E+  ++ A+ G++ +RGD ++I S+ F++
Sbjct: 367 NT--EELKNLIIASAGLDPKRGDQVSIVSVPFVK 398


>gi|238782822|ref|ZP_04626851.1| Flagellar M-ring protein [Yersinia bercovieri ATCC 43970]
 gi|238716245|gb|EEQ08228.1| Flagellar M-ring protein [Yersinia bercovieri ATCC 43970]
          Length = 569

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 132/489 (26%), Positives = 226/489 (46%), Gaps = 58/489 (11%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92
           I L +A  F+  SP Y  L+  +   D   I   L++ N+ +R  D G +I VP+  V +
Sbjct: 39  ITLIIALLFWAKSPDYRVLFSNITDQDGGAIVSQLAQMNVPYRFEDRGGAIMVPADKVYE 98

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
           AR+ LA  GLP   +  G+EL D+   FG++ F +++   RALEGE++RTI+++  +  A
Sbjct: 99  ARLKLAQLGLPKGGA-VGFELLDQ-EKFGISQFSEQVNFQRALEGELSRTIETLGSVNGA 156

Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVL 210
           RVH+ MP    F +   +P+ASV +R  N  + +  +  AI +L+A+AVP L    VT++
Sbjct: 157 RVHLAMPKPSMFVREQKQPSASVTVRLNNGRLLEGEQVSAITYLIASAVPGLSADSVTIV 216

Query: 211 DSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDT 270
           D  G+LLT    +     + L     ++ + +  I   L+  +G +N +S V A+L+   
Sbjct: 217 DQNGRLLTQRGGQTTQTSQ-LKFTSEVEADFQQRIQSILSPIVGRNNVKSQVTAQLDFTL 275

Query: 271 QQIREIVYDPDSKVER-SIRLSK--DAQRSETSQPESAVTVEQNMPHVSDR--------- 318
            +     + P++  +R SIR S+  DA++              N P +            
Sbjct: 276 HEQTAEQFQPNTAPDRMSIRSSQSSDAEQGGKGGVGGVPGALSNQPSLPATAPITQAATP 335

Query: 319 --------------------------KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
                                       P+P +    ++++  +NYE++           
Sbjct: 336 TAPGATGAAGAATAGATGAKGGAATVATPIPFN----NRRDNTTNYELDRTLTHIKRSTG 391

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
            +ERLSIAVV+N   L    G SA   K    + +I+ +V  A G ++ RGDT+ I +  
Sbjct: 392 SIERLSIAVVINY--LPTAEGESAPLPK--EQMEQISALVKEAVGFSAERGDTVNIVNSP 447

Query: 413 F--LENQLFNSGTVQVSFMDIL---SRHFATVINALVFLVGTLLVTFLGLHA--LRRLHN 465
           F  +E ++      Q  F+++L    R+    I A +F    +   +L      L RL  
Sbjct: 448 FNNVEEEVAPPFWQQAGFINLLMAAGRYLLVAIVAWLFWRKAIKPAWLRNQELILARLEL 507

Query: 466 IDDAKKGEV 474
             +A++ E+
Sbjct: 508 EKEARQAEL 516


>gi|300722640|ref|YP_003711930.1| flagellar basal-body MS-ring and collar protein [Xenorhabdus
           nematophila ATCC 19061]
 gi|297629147|emb|CBJ89743.1| flagellar biosynthesis; basal-body MS(membrane and
           supramembrane)-ring and collar protein [Xenorhabdus
           nematophila ATCC 19061]
          Length = 574

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 121/423 (28%), Positives = 210/423 (49%), Gaps = 47/423 (11%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92
           I + +A   ++ SP Y  LY  L   D   I   L++ N+ +R ++NGS+I +P+  V +
Sbjct: 37  IAIVVALFLWLRSPDYRVLYSNLSDKDGGEIVTQLTQMNVPYRFAENGSAIMIPTEKVHE 96

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
            R+ LA QGLP   + +G+EL DK   FG++ F +++   RALEGE+ART++S+  + +A
Sbjct: 97  TRLKLAQQGLPKGGA-TGFELLDK-EKFGISQFSEQVNYQRALEGELARTVESLGPVQSA 154

Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVL 210
           RVH+ MP    F +    P+ASV +  +   V    +  AI H+V+++V  L  G+VT++
Sbjct: 155 RVHLAMPKPSLFVREQKSPSASVTVGLLQGRVLDEGQINAIVHMVSSSVAGLPAGNVTIV 214

Query: 211 DSTGKLLTANEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
           D +G+LLT ++   R++    L   Q I++     I   LA  +G  N  + V A+++  
Sbjct: 215 DQSGRLLTQSDATGRDLNTTQLKYTQEIENRFRHRIETILAPVVGRGNVHAQVTAQVDFS 274

Query: 270 TQQIREIVYDPDSKVER-SIRLSKDAQRSE-------------TSQPESAVTVEQNMPHV 315
            ++     Y P+    + ++R  + +   +             ++QP +A +     P+ 
Sbjct: 275 RREETTEEYKPNQPPNQAAVRSKQSSSSEQSGGPLVGGVPGALSNQPSAAPSAPIEKPNT 334

Query: 316 ---------SDRK------------VPLPRSLEN--TDKKEEQSNYEINTKSIATTHDNY 352
                    SD K                R + N   ++ +E +NYE++     T     
Sbjct: 335 NANTNAKDNSDEKPDQQQRNGNNRNNSYERMVSNNHNNRYDETTNYEVDRTIRHTQLQAG 394

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGK--IDSYLAEINKIVSAATGINSRRGDTITITS 410
            +ERLS+AVVVN    T V G +  + K  +   LA+I  +   A G ++ RGD++ +T+
Sbjct: 395 AVERLSVAVVVN---YTMVQGENGPETKPLMPEQLAQIEALTREAIGFSTDRGDSLNVTN 451

Query: 411 MDF 413
             F
Sbjct: 452 TPF 454


>gi|121533763|ref|ZP_01665590.1| flagellar M-ring protein FliF [Thermosinus carboxydivorans Nor1]
 gi|121307754|gb|EAX48669.1| flagellar M-ring protein FliF [Thermosinus carboxydivorans Nor1]
          Length = 511

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 128/421 (30%), Positives = 215/421 (51%), Gaps = 37/421 (8%)

Query: 5   DQLLQFFKSGTSLGRT-RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +Q LQ ++S   LG+  R LI AS   V   + + + ++     Y  LY  L++ D   +
Sbjct: 6   EQSLQIWRS---LGKKQRYLIAASAFFVFAAILLWSYWWGGRIDYVPLYTGLDLKDAGEV 62

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L E  +  +I  NGS+I VP+  V + R+ LA+QGLP      G+E+FD+   FG+T
Sbjct: 63  VGKLKEMKVPHQIEANGSAILVPAKDVHRVRLELASQGLPRGYK--GFEIFDQ-TKFGIT 119

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
            F Q++  ++AL+GE+ RTI+ ++ +  ARVHIV+ +   ++K     TASVM++ + P 
Sbjct: 120 DFQQKVYLLQALQGELTRTIEQMAEVEKARVHIVLAEDSLYKKNEKPATASVMLK-LRPG 178

Query: 184 VYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ----- 235
           V  S E +R   +LVA ++  L   +VTV+D+  ++L  ++++      ++ + Q     
Sbjct: 179 VQLSREQVRGIVNLVAHSIQGLKPENVTVVDNYARVLN-DQVDTPFTAGTIPVTQLELTK 237

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSK 292
            IQ +++ N++  L   LG     + V  ELN D + I   +++P   D  + RS++   
Sbjct: 238 KIQEDLQKNVHTLLEQVLGPGKAAARVSVELNFDQRTIDRQIFEPIVDDKGIIRSMQEMS 297

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
           +  R              N+P      V    +  N +KKE   NYEIN           
Sbjct: 298 ETYRGSAPVAGGVPGTTANIPGY----VTGANNQSNYEKKEVTRNYEINETKEKVVTAPG 353

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
            ++RL++AV+V+          S D+ K +S    I K V++A G+N  RGDTI++ S+ 
Sbjct: 354 AIKRLTVAVLVDA---------SIDRAKQES----IAKTVASAVGLNPSRGDTISVESIP 400

Query: 413 F 413
           F
Sbjct: 401 F 401


>gi|146312175|ref|YP_001177249.1| flagellar MS-ring protein [Enterobacter sp. 638]
 gi|145319051|gb|ABP61198.1| flagellar M-ring protein FliF [Enterobacter sp. 638]
          Length = 565

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 195/414 (47%), Gaps = 56/414 (13%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  SP Y  LY  +   D   I   L++ NI +R +DNG +I VP+  V + R+ LA Q
Sbjct: 44  LWAKSPDYRTLYSNVSDQDGGAIVTQLTQLNIPYRFADNGGAIEVPADKVHELRLRLAQQ 103

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F ++I   RALEGE+ARTI+++  +  ARVH+ MP 
Sbjct: 104 GLPKGGA-VGFELLDQ-EKFGISQFSEQINYQRALEGELARTIETLGPVKTARVHLAMPK 161

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    P+ASV +     RA++        A+ HLV++AV  L  G+VTV+D +G 
Sbjct: 162 PSLFVREQKNPSASVTVTLEPGRALDEG---QISAVTHLVSSAVAGLPTGNVTVVDQSGH 218

Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT +N   R++    L     ++  I+  I   L   +G  N  + V A++N D ++  
Sbjct: 219 LLTQSNTSSRDLNDAQLKYANDVEGRIQRRIEAILGPIVGSSNIHAQVTAQINFDNKEQT 278

Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQPESAVTVEQNMPH------ 314
           E  Y P+    +++  S+    +E              ++QP  A +   + P       
Sbjct: 279 EEQYSPNGDAAQAVMRSRQLNTTEQIGGQNPGGVPGALSNQPAPANSAPISTPPANQQNG 338

Query: 315 -------------VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
                         S      PR+      + E +NYE++     T  +   ++RLS+AV
Sbjct: 339 QQNGQQNNQQQQTTSTAASSGPRN----SSRNETTNYEVDRTIRHTKMNVGDVQRLSVAV 394

Query: 362 VVNKGRLTE--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           VVN   L +   L  + DQ K      +I  +   A G   +RGD++ + +  F
Sbjct: 395 VVNYKTLPDGKPLPLTTDQMK------QIEDLTREAMGFTEKRGDSLNVVNSPF 442


>gi|309779486|ref|ZP_07674247.1| flagellar M-ring protein FliF [Ralstonia sp. 5_7_47FAA]
 gi|308921727|gb|EFP67363.1| flagellar M-ring protein FliF [Ralstonia sp. 5_7_47FAA]
          Length = 610

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 146/566 (25%), Positives = 267/566 (47%), Gaps = 77/566 (13%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  LY  +  SD   I  AL + N+ +R ++ G++I VP + V +AR+ LA+Q
Sbjct: 69  LWSRAPDYRVLYSNVSDSDGGAIIAALQQMNVPYRFAEGGTAIMVPEASVHEARLKLASQ 128

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP     +G+EL +    FG + F +++   RALEGE+ARTIQ++  + +ARVH+ M  
Sbjct: 129 GLPKGG-QAGFELMEN-QKFGTSQFTEQVNYQRALEGELARTIQAMQEVQSARVHLAMTK 186

Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
              F +  A+P+ASV+++ + P         +AI HLV+++VPNL + +VTV+D +G+LL
Sbjct: 187 PSVFVREQAKPSASVLLK-LYPGRMLDRSQVQAIGHLVSSSVPNLPLANVTVVDQSGRLL 245

Query: 218 TANEMERNILG---KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQI 273
           +++  + N  G     LS V+ ++      I   L   +G DN R+ V A++++D T+Q+
Sbjct: 246 SSS-FQDNASGLDPTQLSYVRDVEQGYIKRIEAILGPVVGEDNVRAQVTADVDLDNTEQM 304

Query: 274 REIV---YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPL-------- 322
            E      DP +   RS   ++  Q    +Q         N P  + R +P         
Sbjct: 305 AESYRPNQDPANAAVRSTHTAEATQNKADAQ-GGVPGALSNQPPTAPRMLPTAPAPASAS 363

Query: 323 ----------PR------------SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
                     P+            S  ++  ++  +NYE++     T      + RLS+A
Sbjct: 364 QPAATGPNGQPQQVAAANTGGTAASGNSSSTRDTTTNYEVDKTVRRTRAAVGTVRRLSVA 423

Query: 361 VVVN---KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           VVVN    G+  + L         ++ + ++N +V  A G +++RGD++ + +  F    
Sbjct: 424 VVVNYRGDGKTWKPLS--------EAEMVKLNALVKDAVGFDAKRGDSVNVVNSQF---- 471

Query: 418 LFNSGTVQVSFMDI-------LSRHFATVINALVFLVGTLLVTFLGLH-ALRRLHNIDDA 469
              SGT+ +S  D+       + ++       L   +G L++ F  +  A+R +   D  
Sbjct: 472 ---SGTLPMSKDDLPLWKQPDMIQYAIQAAKYLALAIGFLILVFAVIRPAIRSMGEKDAP 528

Query: 470 KKGEVGGKSILSP--PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
                 G+    P  P I+ A  +     +  A  + ++++      L++  N +  K  
Sbjct: 529 ATPTFVGREGEDPNAPIITGAAASAGPELEGPAAGADSEELPDALPQLKN--NDFEKKLE 586

Query: 528 DLRLLHMIEINEERFAKILRKWARSE 553
            +R   + + N    A ++++W  +E
Sbjct: 587 TMR--RVAQSNPRAVAAVIKQWVSNE 610


>gi|197120199|ref|YP_002140626.1| flagellar M-ring mounting plate protein FliF [Geobacter
           bemidjiensis Bem]
 gi|197089559|gb|ACH40830.1| flagellar M-ring mounting plate protein FliF [Geobacter
           bemidjiensis Bem]
          Length = 523

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 139/487 (28%), Positives = 226/487 (46%), Gaps = 46/487 (9%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L +LL+ F    +L   + L++  V L  ++ F A     N   Y  L+  L   D   I
Sbjct: 5   LKKLLEPF---LALSTAKRLVVGGVALASLLGFAALIAVANKTDYRPLFANLTQEDAGEI 61

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L E  + ++IS +G +I VPS  V   R+ LA+ GLP      G+E+FD+ N FG+T
Sbjct: 62  VKKLKEQKVPYQISPDGKAILVPSDNVYDLRLSLASDGLPQGG-GVGFEIFDRKN-FGMT 119

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
            F+Q++   RAL+GE+ RTI  I+G+ +ARVH+ +P+   F+      TASV+++  +  
Sbjct: 120 EFVQKLNYQRALQGELGRTIAQIAGVESARVHLALPEKALFKDQEKPATASVVLKMKSNR 179

Query: 184 VYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA---NEMERNILGKSLSIVQAIQ 238
             +  E   I HLVA+++  +D   VTVLD+ GK+L++   N+    + G      +A +
Sbjct: 180 QLREGEVQGIVHLVASSIEGMDPEQVTVLDTRGKVLSSHSPNDPTSKVAGARQDTQRAFE 239

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
              E  +   L   +G     + V A  +    +  E  YDP+S   RS       QRSE
Sbjct: 240 KTEEEKLQSLLDRVVGSGKSVARVSASFDFKQVEKYEERYDPESAAVRS------EQRSE 293

Query: 299 -----TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
                +S       V+ NM                TD   E  NYE++  +         
Sbjct: 294 EKGGGSSTASGVPGVQSNMGRAQGAAGSTTGGGSKTD---ETLNYEVSRSTARIIEPVGS 350

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSY-------LAEINKIVSAATGINSRRGDTI 406
           L ++S+A++V+ G+    L   A  G    Y       + +I  +V +A G N+ RGD +
Sbjct: 351 LSKVSVAILVD-GKYE--LSPGAKPGATPKYQPRSPDEMQKIESLVKSAVGFNAERGDQV 407

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALV--FLVGT--LLVTFLGLHALRR 462
           T+ ++ F E    + G  Q S+ D      A ++  L+   L+G   L + F  +  L +
Sbjct: 408 TVANIPFQETG--DQGGEQPSWYD------APIVQTLIKNGLIGLAFLALLFYVIRPLMK 459

Query: 463 LHNIDDA 469
           +  I+ A
Sbjct: 460 MLKIEKA 466


>gi|110677673|ref|YP_680680.1| flagellar MS-ring protein [Roseobacter denitrificans OCh 114]
 gi|109453789|gb|ABG29994.1| flagellar M-ring protein FliF, putative [Roseobacter denitrificans
           OCh 114]
          Length = 540

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 167/568 (29%), Positives = 267/568 (47%), Gaps = 53/568 (9%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
           Q   + T L   R +I+A          +A      +P+   LY  LE      +  AL 
Sbjct: 3   QIVTAWTGLPLRRQVIVALATGAMFFAILAMSRMATAPNMTLLYAGLENGAAGDVVAALE 62

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
           +    F +   G SI V SS   + R+ LA++GLP++S+  GYEL D ++ FG TS M +
Sbjct: 63  QRGAVFEV--RGGSIFVDSSQRDELRMTLASEGLPANSTQ-GYELLDTLSGFGTTSQMFD 119

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR----AINPSV 184
               RA EGE+ARTI S   I  ARVHI       F++ G  P ASV +     AI P  
Sbjct: 120 AAYWRAKEGELARTIVSSPHISMARVHIASTGSNPFQR-GVTPKASVSVTPSGAAITP-- 176

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEIEM 243
            +  +AIR LV++AV  L   DV V+D+ G L+  A+E+   I G+  + V      ++ 
Sbjct: 177 -QQGKAIRFLVSSAVAGLASEDVAVIDANGALIGNADEVAPTIGGEDKADV------LKA 229

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            + + L A +G  N    V  +   +++ IRE ++DP+S+V     +S D +   TS  E
Sbjct: 230 RVQRLLEARVGFGNSVVEVSVDTVTESEAIRERIFDPESRVA----ISTDTEERNTSSSE 285

Query: 304 SA---VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           +    VTV  N+P   D       S +N + + E+ NYE++        +   ++R+++A
Sbjct: 286 AGGGDVTVASNLPD-QDGAGGENSSSQNNETR-ERVNYEVSETEREILREPGAIKRVTVA 343

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           V+VN+  +T+  G+     + +S L  +  +V++A G +  RGD ITI SM      L  
Sbjct: 344 VLVNEMTITDEAGQETVTPRDESELEALRDLVASAVGFDEARGDIITIKSMGLQSVPL-- 401

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL---HNIDDAKKGEVGGK 477
            GT   +   ++S     V++A+   +  L+   LGL  +R L   ++++DA        
Sbjct: 402 QGT--AAGTSLMSNFNIDVMSAIQMAILALVTLILGLFVVRPLLARNDLNDA-------P 452

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSN-------QDIFSHSRNLQS-RINSYVSKQSDL 529
           ++ + P  +   T GL  +  I  D           D    S  L    I S +S+    
Sbjct: 453 AVAALPGATDGETDGLGLDGEIDGDDFQLPDLPVISDFGDASGELPDLNIGSGMSEDPVD 512

Query: 530 RLLHMIEINEERFAKILRKWARSEIEDR 557
           RL  MI   ++   +ILR W    +ED+
Sbjct: 513 RLRTMIGERQDETVEILRSW----LEDK 536


>gi|83747628|ref|ZP_00944664.1| FliF [Ralstonia solanacearum UW551]
 gi|207739709|ref|YP_002258102.1| flagellar m-ring protein [Ralstonia solanacearum IPO1609]
 gi|83725680|gb|EAP72822.1| FliF [Ralstonia solanacearum UW551]
 gi|206593091|emb|CAQ59997.1| flagellar m-ring protein [Ralstonia solanacearum IPO1609]
          Length = 611

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 140/465 (30%), Positives = 235/465 (50%), Gaps = 74/465 (15%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  LY  +  SD   I  AL + N+ +R +D GS+I VP + V +AR+ LAAQ
Sbjct: 66  LWSRAPDYRVLYSNVADSDGGAIIAALQQMNVPYRFADGGSAIMVPEANVHEARLKLAAQ 125

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP     +G+EL +    FG + F +++   RALEGE+ARTIQ++  + +ARVH+ +  
Sbjct: 126 GLPKGGL-AGFELMEN-QKFGTSQFAEQVNYQRALEGELARTIQAMQEVQSARVHLALSK 183

Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
              F +  A+P+ASV+++ + P         +AI HLV+++VPNL + +VTV+D +G+LL
Sbjct: 184 PSVFVREQAKPSASVLLK-LYPGRMLDRSQVQAIGHLVSSSVPNLPLANVTVVDQSGRLL 242

Query: 218 TANEMERNILG---KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQI 273
           +++  + N  G     L+ V+ I+      I   L   +G DN R+ V A++++D T+Q+
Sbjct: 243 SSS-FQDNASGLDPTQLNYVRDIEQGYIKRIEAILGPVVGEDNVRAQVTADVDLDNTEQM 301

Query: 274 REIV---YDPDSKVERSIRLSKDAQRSE----------TSQPESAVTV------------ 308
            E      DP + V RS   S+  Q             ++QP +A  +            
Sbjct: 302 AETYRPNQDPANGVVRSTHTSESTQNKAGAQGGVPGALSNQPPTAPRMLPTAPAPASQQA 361

Query: 309 -----EQNMPHVSDRKVPLPRSLEN---TDKKEEQSNYEINTKSIATTHDNYKL-ERLSI 359
                 QN P+   +     ++  N   +  ++   NYE++ K++  T     +  RLS+
Sbjct: 362 AAGQNGQNAPNGQQQAAATGQAATNNVESSARDTTVNYEVD-KTVRRTRAAVGIVRRLSV 420

Query: 360 AVVVN---KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           AVVVN    G+  + L         D+ + ++N +V  A G +++RGD++ + +  F   
Sbjct: 421 AVVVNYRADGKTWKPLS--------DADMVKLNALVKDAVGYDAKRGDSVNVVNSQF--- 469

Query: 417 QLFNSGTVQVSFMDI-LSR-----HFATVINALVFLVGTLLVTFL 455
               SGT+  S  D+ L +     H+A  I A  +  G L + FL
Sbjct: 470 ----SGTLPTSRDDLPLWKQPEMIHYA--IQAAKY--GALAIGFL 506


>gi|242278626|ref|YP_002990755.1| flagellar M-ring protein FliF [Desulfovibrio salexigens DSM 2638]
 gi|242121520|gb|ACS79216.1| flagellar M-ring protein FliF [Desulfovibrio salexigens DSM 2638]
          Length = 534

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 128/453 (28%), Positives = 214/453 (47%), Gaps = 31/453 (6%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L +   F+   T   R  I  LA+ +++  +L +   F++N   Y  LY KL   D +R+
Sbjct: 9   LGKFQTFWSDRTVSQRIMIGGLAATVVIAFILMV---FWLNQTEYRVLYTKLYAEDASRV 65

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L      ++I DNGS+I VP+  V   R+ +A +G        GYE+FD+V   G T
Sbjct: 66  VSILQSTKEPYKIQDNGSTILVPADKVYDLRLKIAGEG-ALHGQGIGYEIFDEVQ-IGQT 123

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
            F+Q I   RAL+GE+ARTI     +  ARVH+V+P    F +    P+ASV+++  +  
Sbjct: 124 DFIQRINYQRALQGELARTISEFPQVERARVHLVLPAKSLFIEEQVDPSASVVLKLKDGE 183

Query: 184 --VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE----MERNILGKSLSIVQAI 237
               K  + + +LV  +V  L    VT+ D  G++L   E    +  NI    L     +
Sbjct: 184 KLADKQIKGVLNLVVMSVEGLKPEHVTITDMRGQVLYQPEDDGGLGLNITNSQLEYKSGL 243

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           + +IE  I + L   +G D   + V A+L+   + I+   YDPD +V RS + S++  R 
Sbjct: 244 ESKIEQRIQRLLMPIVGPDKVIAKVNADLDFRQRTIKTEAYDPDGQVARSEQTSEETTR- 302

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEE--QSNYEINTKSIATTHDNYKLE 355
                     V+  +P  + R      +    D   E   +NYEIN +         +L+
Sbjct: 303 ------GTANVDGGVPEANFRGDGFTGTATTQDSARETRTTNYEINKEEQQIIVPVGELK 356

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKI------DSYLAEINKIVSAATGINSRRGDTITIT 409
           RLS+AV+V+ G  T    ++ D G++      +  +  I ++VS+A G +  RGD + ++
Sbjct: 357 RLSVAVIVD-GTYT----KNPDTGEMTYVPRSEEEMQRIRELVSSAVGYDEVRGDIVEVS 411

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINA 442
           +M F    +F    +  + ++   R     +N 
Sbjct: 412 NMSFGMQDMFGDEGLMRTMLEYAQRLGKPFLNG 444


>gi|83647861|ref|YP_436296.1| flagellar MS-ring protein [Hahella chejuensis KCTC 2396]
 gi|83635904|gb|ABC31871.1| flagellar M-ring protein FliF [Hahella chejuensis KCTC 2396]
          Length = 572

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 143/567 (25%), Positives = 258/567 (45%), Gaps = 47/567 (8%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           D +L F +    L   R L+L   +   I +  A   + N P Y  LY  + V D   +S
Sbjct: 26  DMMLGFNR----LSLLRQLVLMVGVAASIAMGAAIILWANEPAYQPLYPDMSVYDSTEVS 81

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             LS+ NI F++     ++ V +  V  AR+ LAA G+ +     GYEL DK    G + 
Sbjct: 82  DILSQNNIHFKVEPKSGALLVAAEDVSAARMRLAAAGV-TQDRTIGYELLDKDQGLGSSQ 140

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP-S 183
           FM+     R LEGE+ARTI S+  +  ARVH+ +P    F +   RP+ASV++      S
Sbjct: 141 FMESTRYRRGLEGELARTISSLRNVKNARVHLAIPKQSVFVRDKRRPSASVLVELTGSRS 200

Query: 184 VYK-SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240
           +++   EAI +LVA +VP +D  DVTV+D  G LL+ N +  + L   +     + ++  
Sbjct: 201 LHQDQVEAIVNLVAGSVPEMDHRDVTVVDQRGNLLSQNNLTEDDLRTSREFQYARRMEEV 260

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS------IRLSKDA 294
           +   +N  L   LG   FR+ V A+++    +  +  ++PD +  RS       R++   
Sbjct: 261 LTGRVNSILEPILGPGRFRAEVSADVDFTAVEQAQETFNPDPQAVRSEQEIGEQRIAGSN 320

Query: 295 Q---RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           Q    + ++QP     V +              S     +K+   NYE++     T    
Sbjct: 321 QGVPGALSNQPPGVAAVPEQAGVAGAAANATANSQATDIRKQTVRNYEVDRTVSYTKQHQ 380

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
            K++RL++AVVV+  R     G    +   ++ L  +  +V  A G ++ RGD++ + + 
Sbjct: 381 GKVQRLTVAVVVDDLRRVGADGAVTTEAWPEAELQRLTVLVRDAVGYSAARGDSVNVINT 440

Query: 412 DFLENQL----FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
            F+  ++    + +   +  ++  L +     +  L+ + G +  TF  L +        
Sbjct: 441 PFMAEEVEISDYEAPLWEQPWIRELIKWGVAFLIVLILVFGVIRPTFKNLSS-----GGA 495

Query: 468 DAKK----GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF-SHSRNLQSRINSY 522
           DAK     G+  G + L       ++ +G+   +++ L+++   +    S   + +IN+ 
Sbjct: 496 DAKNLALAGDEDGLAEL------ESLGSGVGEGESVGLNAAGDFLLPGSSEGYEKKINA- 548

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKW 549
                   L  +I  +  R A+++R+W
Sbjct: 549 --------LKGLIAEDPGRVAQVVRQW 567


>gi|226941278|ref|YP_002796352.1| FliF1 [Laribacter hongkongensis HLHK9]
 gi|226716205|gb|ACO75343.1| FliF1 [Laribacter hongkongensis HLHK9]
          Length = 571

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 129/471 (27%), Positives = 230/471 (48%), Gaps = 36/471 (7%)

Query: 18  GRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS 77
           G  ++L+   +  V  +L +AA  +   P Y  L+  L   +  +++ AL++ N+ ++++
Sbjct: 28  GNKKLLLFGGMAAVASIL-VAAYLYTREPAYKVLFSNLPDREGGQVTEALTKLNVPYQLA 86

Query: 78  DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137
           D G  I VP+  V   R+ LA++GLP +S   G+EL D    FG++ F +++   RA+EG
Sbjct: 87  D-GGVIRVPAEQVYSTRLKLASEGLPKASG-IGFELMDN-QKFGISQFAEQVNYQRAVEG 143

Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA---EAIRHL 194
           E+ARTI+++  + +ARVH+ MP    F +    PTASV++  + P     A     IR+L
Sbjct: 144 ELARTIEALGVVESARVHLAMPKQSVFVREQQLPTASVLLN-LRPGFILDAGQIAGIRNL 202

Query: 195 VAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILG---KSLSIVQAIQHEIEMNINKALA 250
           VA+AVP L   ++T++D  G L++   +ME    G   + L  V+ I+  +   I   L 
Sbjct: 203 VASAVPGLPQKNITIVDQEGNLISRMPDMEDGSAGLSRRQLDYVRQIETSLTKRIEAILE 262

Query: 251 AFLGVDNFRSAVVAELNM-DTQQIREIV---YDPDSKVERSIRLSKDAQRSE-------- 298
             +G  N R+ V A ++  + +Q  E       P++   RS + S+   R E        
Sbjct: 263 PIVGSGNARAQVTAAVDFSEVEQTAETFNPNTPPNAGAIRSQQTSESQTREEAPQGGVPG 322

Query: 299 --TSQPESAVTVEQNMPHVSDRKV-PLPRSLENTDK-----KEEQSNYEINTKSIATTHD 350
             ++QP +A      +P  +   + P P   +N  +     KE  +NYE++         
Sbjct: 323 ALSNQPPNAAAAPVTLPPGTQAGLMPAPNGQQNQARPVKSSKEATTNYEVDRTIQHVRQQ 382

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
              L+R++ AVVVN  R T   G +      +  + +++K+V  A G    RGD++ + +
Sbjct: 383 TGALKRVTAAVVVNFKRTTTADGNAKMTPLSEQEMQQLDKLVREAMGFTQARGDSVQVVN 442

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461
             F +    +   +Q    D  S +   +   L +++G L+V +L    +R
Sbjct: 443 ASFADT-AGSKAALQDRLFDYASNNPGEI---LKWVLGALVVLYLLFGVIR 489


>gi|39995518|ref|NP_951469.1| flagellar M-ring protein FliF [Geobacter sulfurreducens PCA]
 gi|39982281|gb|AAR33742.1| flagellar M-ring protein FliF [Geobacter sulfurreducens PCA]
 gi|298504518|gb|ADI83241.1| flagellar M-ring mounting plate protein FliF [Geobacter
           sulfurreducens KN400]
          Length = 527

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 125/412 (30%), Positives = 201/412 (48%), Gaps = 33/412 (8%)

Query: 27  SVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVP 86
           SVI   I++ +A     N   Y  L+  L   D   I   L E  + +RI+ +G +I VP
Sbjct: 30  SVIAFTILILVA-----NRTDYRPLFTNLTSEDAGEIVTKLKEQKVPYRIAADGKAILVP 84

Query: 87  SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146
           S  V   R+ LA+ GLP      G+E+FD+ N FG+T F+Q++   RAL+GE++RTI  I
Sbjct: 85  SDKVYDLRLSLASDGLPQGG-GVGFEIFDRKN-FGMTDFVQKLNYQRALQGELSRTISQI 142

Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEAIRHLVAAAVPNLDM 204
           SG+  ARVH+V+P+   F++     TASV+++       +    + I HLVA+A+  ++ 
Sbjct: 143 SGVEQARVHLVIPEKSLFKEDEKPATASVVLKVKGQRQLRENDVQGIVHLVASAIEGMNP 202

Query: 205 GDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFL--GVDNFRSAV 262
             VTVLD  GKLL+ N    +  GK  + +Q +Q   E +  + L + L   V   +S  
Sbjct: 203 EHVTVLDQKGKLLSKN-TPGDAAGKMTASMQEVQRAYERSTEERLQSLLDKAVGAGKSVA 261

Query: 263 VAELNMDTQQIR--EIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVS---D 317
                 D +Q+   E  YDP++ V       +  QRSE  Q  S VT    +P V     
Sbjct: 262 RVSAVFDFRQVERYEEKYDPETVV-------RSEQRSEEKQDGSTVT--GGVPGVQTNLG 312

Query: 318 RKVPLPRSLENTDKKEEQS-NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA 376
           R    P        K +++ NYE++  +  T      L ++S+A++V+        G+  
Sbjct: 313 RTAGQPAGTSGGGSKNDETLNYEVSRATARTIEPVGTLSKVSVAILVDGKYDAAAAGKDG 372

Query: 377 DQGKID------SYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
            + K          L +I+ +V ++ G N  RGD +T+ ++ F +     +G
Sbjct: 373 KEAKPKYTPRSPDELQKIDALVKSSVGFNVERGDQVTVVNIPFQDTGDVGAG 424


>gi|322616962|gb|EFY13870.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322618201|gb|EFY15093.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625872|gb|EFY22691.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322626324|gb|EFY23134.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322632739|gb|EFY29484.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322639081|gb|EFY35774.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322640397|gb|EFY37053.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322647242|gb|EFY43741.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322649910|gb|EFY46331.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322660296|gb|EFY56534.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322662977|gb|EFY59184.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322668162|gb|EFY64321.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322674079|gb|EFY70173.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322675569|gb|EFY71643.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322686714|gb|EFY82692.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323195398|gb|EFZ80578.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323198074|gb|EFZ83191.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323207544|gb|EFZ92492.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323211017|gb|EFZ95877.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323217529|gb|EGA02248.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323219604|gb|EGA04088.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323231551|gb|EGA15664.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235994|gb|EGA20073.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323240564|gb|EGA24607.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323245456|gb|EGA29456.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323250226|gb|EGA34118.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323253963|gb|EGA37787.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323255510|gb|EGA39271.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323262107|gb|EGA45670.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323266230|gb|EGA49720.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323270661|gb|EGA54102.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 560

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 134/448 (29%), Positives = 217/448 (48%), Gaps = 54/448 (12%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V I++ M    +  +P Y  L+  L   D   I   L++ NI +R ++   +
Sbjct: 28  LIVAGSATVAIVVAMV--LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGA 85

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE+ART
Sbjct: 86  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELART 143

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAA 197
           I+++  + +ARVH+ MP    F +    P+ASV +     RA++        A+ HLV++
Sbjct: 144 IETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALD---EGQISAVVHLVSS 200

Query: 198 AVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVD 256
           AV  L  G+VT++D +G LLT +N   R++    L     ++  I+  I   L+  +G  
Sbjct: 201 AVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNG 260

Query: 257 NFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE--------------TSQP 302
           N  + V A+L+   ++  E  Y P+    ++   S+    SE              ++QP
Sbjct: 261 NVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQP 320

Query: 303 ----ESAVTVE-------QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
               E+ +          QN P  S           NT ++ E SNYE++     T  + 
Sbjct: 321 APPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRNT-QRNETSNYEVDRTIRHTKMNV 379

Query: 352 YKLERLSIAVVVNKGRLTE--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
             +ERLS+AVVVN   L +   L  +ADQ K      +I  +   A G + +RGDT+ + 
Sbjct: 380 GDIERLSVAVVVNYKTLADGKPLPLTADQMK------QIEDLTREAMGFSDKRGDTLNVV 433

Query: 410 SMDFLENQLFNSG-----TVQVSFMDIL 432
           +  F  + + N+G       Q SF+D L
Sbjct: 434 NSPF--SAVDNTGGELPFWQQQSFIDQL 459


>gi|300311375|ref|YP_003775467.1| hypothetical protein Hsero_2059 [Herbaspirillum seropedicae SmR1]
 gi|300074160|gb|ADJ63559.1| hypothetical protein Hsero_2059 [Herbaspirillum seropedicae SmR1]
          Length = 569

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 119/398 (29%), Positives = 197/398 (49%), Gaps = 35/398 (8%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
            Y  L+      D   I  +L + N+ ++ SD G++I VP +MV  AR+ LAAQGLP   
Sbjct: 47  EYRVLFSNFNDRDGGAIVASLQQMNVPYKYSDGGTAILVPENMVHDARLKLAAQGLPKGG 106

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            N G+EL +     G++ F++++   RALEGE+AR++ S++ +  ARVH+ +P    F +
Sbjct: 107 -NVGFELMEN-QKLGISQFLEQVNFQRALEGELARSVGSLASVQTARVHLALPKASVFVR 164

Query: 167 IGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL--TANE 221
              +PTASV++ ++ P  Y   +   AI HLVA++VP L    VT++D  G LL  T  +
Sbjct: 165 DQQKPTASVVL-SLYPGRYLDPQQVSAIVHLVASSVPELSPKAVTIVDQNGNLLSDTTKQ 223

Query: 222 MERNILGKS-LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP 280
            + N L  + L  VQ +Q +I   +   +A  +G  N R+   A+++    +     Y P
Sbjct: 224 AQPNTLDPTQLKYVQDMQQDIVKRVESIIAPIVGNGNVRAEATADVDFSRSEQASEAYKP 283

Query: 281 ----DSKVERSIRLSKDAQRSE---------TSQPESAVTVEQNMPHVS----------- 316
               DS   RS + S+    S          ++QP +  T     P V+           
Sbjct: 284 NQTKDSAAVRSKQSSEANSASNGTSGVPGALSNQPPAPATAPIVNPAVANGAANQTGAAT 343

Query: 317 -DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS 375
            +  +P P +  N+ +K+E  NYE++     T      + RL++AVVVN  R  +  G+ 
Sbjct: 344 PNGALPTPTATGNS-RKDETINYEVDKTVRYTQQPMGGVRRLTVAVVVNYKRTMDNTGKI 402

Query: 376 ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
             +   ++   +I  +V  A G N  RGD++ + +  F
Sbjct: 403 VMRPLTEAERNQITDLVKEAMGYNKDRGDSLNVVNTQF 440


>gi|16760913|ref|NP_456530.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|25304719|pir||AB0752 flagellar basal-body M-ring protein [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503210|emb|CAD05717.1| flagellar basal-body M-ring protein [Salmonella enterica subsp.
           enterica serovar Typhi]
          Length = 560

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 134/448 (29%), Positives = 217/448 (48%), Gaps = 54/448 (12%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V I++ M    +  +P Y  L+  L   D   I   L++ NI +R ++   +
Sbjct: 28  LIVAGSTAVAIVVAMV--LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGA 85

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE+ART
Sbjct: 86  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELART 143

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAA 197
           I+++  + +ARVH+ MP    F +    P+ASV +     RA++        A+ HLV++
Sbjct: 144 IETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEG---QISAVVHLVSS 200

Query: 198 AVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVD 256
           AV  L  G+VT++D +G LLT +N   R++    L     ++  I+  I   L+  +G  
Sbjct: 201 AVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNG 260

Query: 257 NFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE--------------TSQP 302
           N  + V A+L+   ++  E  Y P+    ++   S+    SE              ++QP
Sbjct: 261 NVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQP 320

Query: 303 ----ESAVTVE-------QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
               E+ +          QN P  S           NT ++ E SNYE++     T  + 
Sbjct: 321 APPNEAPIATPPTNQQNAQNTPQTSTSTNSNNAGPRNT-QRNETSNYEVDRTIRHTKMNV 379

Query: 352 YKLERLSIAVVVNKGRLTE--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
             +ERLS+AVVVN   L +   L  +ADQ K      +I  +   A G + +RGDT+ + 
Sbjct: 380 GDIERLSVAVVVNYKTLADGKPLPLTADQMK------QIEDLTREAMGFSDKRGDTLNVV 433

Query: 410 SMDFLENQLFNSG-----TVQVSFMDIL 432
           +  F  + + N+G       Q SF+D L
Sbjct: 434 NSPF--SAVDNTGGELPFWQQQSFIDQL 459


>gi|302392396|ref|YP_003828216.1| flagellar M-ring protein FliF [Acetohalobium arabaticum DSM 5501]
 gi|302204473|gb|ADL13151.1| flagellar M-ring protein FliF [Acetohalobium arabaticum DSM 5501]
          Length = 524

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 122/383 (31%), Positives = 193/383 (50%), Gaps = 30/383 (7%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           + + P+Y  L+  L + D   I+  L E  ID+++  +G+ ISVP+  V + R+ LA++G
Sbjct: 44  WASQPNYVTLFNDLTMKDAGAITKQLDEKQIDYKLGADGTKISVPAQKVHQVRLDLASKG 103

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   +  G+E+FDK N  G T F Q++   RAL GE+AR+I  +  +  A+V I  P  
Sbjct: 104 LPQKGA-VGFEIFDK-NQLGSTDFEQQVNFYRALSGELARSIMHLQNVKFAKVQISAPRE 161

Query: 162 GSFRKIGARPTASVMIRAINPSV--YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             +        ASVM++    +    K  E I +LVA++V +L   +VTV+D  G LLTA
Sbjct: 162 SLYLDKKKVVKASVMLKMKEYAELDLKQVEGITNLVASSVEDLKPENVTVVDDRGNLLTA 221

Query: 220 --NEMER----NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI 273
             N+ ++    +   K L +    +  +E  +N  L+  LG DN    V A+LN D +Q+
Sbjct: 222 ELNKEDKFNNTDFSPKLLELENDFESNMESELNTMLSKVLGPDNVVVRVNAKLNFDRRQM 281

Query: 274 REIVYDP---DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD 330
               Y+P   D  V RS + ++ +   +   P      E N+P     +        N D
Sbjct: 282 ESRTYEPVNDDQGVVRSEQSTEVSYSGQGDTPSGVPGTESNIPGYEGGE----EQSSNYD 337

Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINK 390
           K+E  +NYEIN K    T     +E++S+AV+V+K  L+     S            I +
Sbjct: 338 KEETTTNYEINEKIETYTQVPGDVEKMSVAVMVDK-ELSPAQTES------------IRQ 384

Query: 391 IVSAATGINSRRGDTITITSMDF 413
            V +A G ++ RGD ITIT+ +F
Sbjct: 385 SVESAVGYSAERGDQITITNFEF 407


>gi|299068777|emb|CBJ40017.1| FliF: Flagellar biosynthesis protein, M-ring protein, Belongs to
           the fliF family [Ralstonia solanacearum CMR15]
          Length = 611

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 141/483 (29%), Positives = 234/483 (48%), Gaps = 78/483 (16%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  LY  +  SD   I  AL + N+ +R +D GS+I VP + V +AR+ LAAQ
Sbjct: 66  LWSRAPDYRVLYSNVADSDGGAIIAALQQMNVPYRFADGGSAIMVPEANVHEARLKLAAQ 125

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP     +G+EL +    FG + F++++   RALEGE+ARTIQ++  + +ARVH+ +  
Sbjct: 126 GLPKGGL-AGFELMEN-QKFGTSQFVEQVNYQRALEGELARTIQAMQEVQSARVHLALSK 183

Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
              F +   +P+ASV+++ + P         +AI HL+A++VP+L + +VTV+D +G+LL
Sbjct: 184 PSVFVREQVKPSASVLLK-LYPGRMLDRSQVQAIGHLLASSVPDLPLANVTVVDQSGRLL 242

Query: 218 TANEMERNILG---KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQI 273
           +A   + N  G     L+ V+ I+      I   L   LG DN R+ V A++++D T+Q+
Sbjct: 243 SA-AFQDNASGLDPTQLNYVRDIEQGYIKRIEAILGPVLGDDNVRAQVTADVDLDNTEQM 301

Query: 274 REIV---YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVP--------- 321
            E      DP +   RS   S+  Q    +Q         N P  + R +P         
Sbjct: 302 AETYRPNQDPANGAVRSTHTSESTQNKAGAQ-GGVPGALSNQPPTAPRMLPTAPAPAAQQ 360

Query: 322 ------------------------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
                                      S+E++  ++  +NYE++     T      + RL
Sbjct: 361 AAAGQNGQNGQNGQQQGAAGTGQAAANSVESS-ARDITTNYEVDKTVRRTRAAVGTVRRL 419

Query: 358 SIAVVVN---KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           S+AVVVN    G+  + L         D+ + ++N +V  A G +++RGD++ + +  F 
Sbjct: 420 SVAVVVNYRADGKTWKPLS--------DAEMTKLNALVKDAVGYDAKRGDSVNVVNSQF- 470

Query: 415 ENQLFNSGTVQVSFMDI-LSR-----HFATVINALVF---LVGTLLVTFLGLHALRRLHN 465
                 SGT+  S  D+ L +     H+A  I A  +    +G L++ F  +  L R  N
Sbjct: 471 ------SGTLPTSKDDLPLWKQPEMIHYA--IQAAKYGALAIGFLILVFAVIRPLIRSMN 522

Query: 466 IDD 468
             D
Sbjct: 523 KKD 525


>gi|224826633|ref|ZP_03699734.1| flagellar M-ring protein FliF [Lutiella nitroferrum 2002]
 gi|224601234|gb|EEG07416.1| flagellar M-ring protein FliF [Lutiella nitroferrum 2002]
          Length = 576

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 129/453 (28%), Positives = 209/453 (46%), Gaps = 32/453 (7%)

Query: 25  LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSIS 84
           LA+V  V + L +  R    +P Y  L+  L   D  +I+ AL + N+ ++I   G  IS
Sbjct: 38  LAAVFSVIVGLLILNR----TPDYKVLFANLADRDGGQITAALQQMNVPYQIG-GGGVIS 92

Query: 85  VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144
           VPS  V   R+ LAAQGLP +    G+EL D    FG++ F +++   RA+EGE+ARTI+
Sbjct: 93  VPSDKVYDVRLKLAAQGLPKAGG-VGFELMDN-QKFGISQFAEQVNYQRAIEGELARTIE 150

Query: 145 SISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNL 202
           +I  + +ARVHI +P    F +   +PTASVM+      V    +   I HLV+++VPNL
Sbjct: 151 AIGAVESARVHIAIPKQSVFVRDQQQPTASVMLNLYPGRVLDGGQISGILHLVSSSVPNL 210

Query: 203 DMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
              +VTV+D  G LL++     N  G   + L  V  I+ +    I   L    G  N R
Sbjct: 211 SARNVTVVDQDGNLLSSQSDVNNAAGLDQRQLGYVHQIESDFVKRIEGILEPIFGKGNVR 270

Query: 260 SAVVAELNMDTQQIREIVYDPDS--------------KVERSIRLSKDAQRSETSQPESA 305
           + V A ++    +     + P+S              K+     L      + ++QP SA
Sbjct: 271 AQVTANVDFSEVEQTSETFRPNSTPNPSATRSQQIVEKLGSGSNLPGGVPGALSNQPPSA 330

Query: 306 VTVEQNMPHVSDRKVPL----PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
            +    +P  +          P       +++  +NYE++     T      L+RLS AV
Sbjct: 331 ASAPLTLPPGAAPGTATLSGQPLGQNGALERQLITNYEVDKTIQHTKLPKGVLKRLSAAV 390

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           VVN   + +  G           + +IN +V    G N+ RGDT+ + +  F  N     
Sbjct: 391 VVNYRLMPDRNGEVKPTPLTAQEIQQINNLVRETMGYNTERGDTLNVVNAAFAGNA--PP 448

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTF 454
            ++Q   +D +S +   ++  ++  +  L + F
Sbjct: 449 ASLQEKVVDYVSSNATDLVKYVLLAIAVLYLLF 481


>gi|260886631|ref|ZP_05897894.1| flagellar M-ring protein FliF [Selenomonas sputigena ATCC 35185]
 gi|330839537|ref|YP_004414117.1| flagellar M-ring protein FliF [Selenomonas sputigena ATCC 35185]
 gi|260863774|gb|EEX78274.1| flagellar M-ring protein FliF [Selenomonas sputigena ATCC 35185]
 gi|329747301|gb|AEC00658.1| flagellar M-ring protein FliF [Selenomonas sputigena ATCC 35185]
          Length = 529

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 120/458 (26%), Positives = 220/458 (48%), Gaps = 31/458 (6%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           R R +I+ +  LV I +   +  +   P    L+  +E  D   ++  L E  +++ I +
Sbjct: 18  RQRYMIIGAAALVFIAIVAGSIIYGGKPDMVPLFTNMEAKDAGEVAAKLKENKVNYEIQE 77

Query: 79  --NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136
              G++I VP+  V   R+ LAA+GLP    N G+ELFD  +  G+T F  ++  ++AL+
Sbjct: 78  GGQGTTILVPAKSVDSTRLDLAAEGLPRG--NKGFELFDD-SKLGVTEFQNKVNYLQALQ 134

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYKSAEAIRHL 194
           GE+ RTI+ I  +  ARVHIV+P+   ++K     TAS+M  ++A      K  + I +L
Sbjct: 135 GELTRTIEQIDAVEKARVHIVLPEDSLYKKNEKPATASIMLKLKANMQLSKKEVKGIVNL 194

Query: 195 VAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGK----SLSIVQAIQHEIEMNINKAL 249
            A +V  L   ++T++D +GK+L   +E   + +G+     + + + +Q  ++ N+   L
Sbjct: 195 AAHSVQGLTPENITIVDESGKILNDPDENGDDGVGQKTLTQMEMTKKVQDNLQKNVQSLL 254

Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQRSETSQPESAV 306
            A LG       +  EL+ D +     +Y P   +S + RS + + ++    ++QP    
Sbjct: 255 DASLGEGKSFVRISVELDFDQKMTDSQIYTPVVDESGIVRSQQTTSESYAGTSTQPGGPA 314

Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
             + N+P   ++      S    ++KE  +NYE+N +          + RL++AV+VN  
Sbjct: 315 GTQSNVPGYVEQN---NNSQAQYERKENTTNYEVNEEKRKVVASPGSIRRLTVAVLVND- 370

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
                      Q + +S L    + V +A GIN  RGDT+++  + F           + 
Sbjct: 371 --------DVTQAQQESIL----RSVRSAAGINPDRGDTVSVEPLPFSTEARDKKLADEQ 418

Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
           +  D L R F   + A + ++  ++ + L     +RL 
Sbjct: 419 AERDRLDREFYLQLAAFLLVIALIVGSILMYRRKKRLE 456


>gi|148266223|ref|YP_001232929.1| flagellar M-ring protein FliF [Geobacter uraniireducens Rf4]
 gi|146399723|gb|ABQ28356.1| flagellar M-ring protein FliF [Geobacter uraniireducens Rf4]
          Length = 525

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 132/467 (28%), Positives = 223/467 (47%), Gaps = 38/467 (8%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           +L   + LI+A V +  ++ F A     N   Y  L+  L   D   I   L +  + ++
Sbjct: 14  TLPPAKRLIVAGVAVASLVAFAALIVVANKTDYRPLFANLTTEDAGEIVKKLKDQKVPYQ 73

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135
           I+ +G +I VPS  V   R+ LA++GLP      G+E+FD+ N FG+T F+Q++   RAL
Sbjct: 74  IAADGKAILVPSDKVYDLRLSLASEGLPQGG-GVGFEIFDRKN-FGMTEFVQKLNYQRAL 131

Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRH 193
           +GE++RTI  ++G+  ARVH+ + +   F+      TASV+++  +    +  E   + H
Sbjct: 132 QGELSRTIAQLAGVEQARVHLAIAEKSLFKDNEKPTTASVVLKMKSNHTLRENEVQGVVH 191

Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFL 253
           LVA+++  +D  +VTVLDS GK+L+      ++  K  S +Q  Q   E N+   L   L
Sbjct: 192 LVASSIEGMDPENVTVLDSRGKMLS-KVGASDLTSKMTSTMQETQRTYEKNLEDRLQTLL 250

Query: 254 G--VDNFRSAVVAELNMDTQQIR--EIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309
              V   +S        D +Q+   E  YDP+S   RS       QRSE  +   A TV 
Sbjct: 251 DKVVGTGKSVARVSATFDFKQVEKYEERYDPESAAVRS------EQRSE--EKGGASTVA 302

Query: 310 QNMPHVSD---RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
             +P V     +  P   +     K +E  NYE++  +         + ++S+A++V+  
Sbjct: 303 AGVPGVQSNMAKAAPAGVTSGGGSKSDETLNYEVSRSTARIIEPVGSMNKVSVAILVDGK 362

Query: 367 RLTE------VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE----- 415
            +           ++  Q +    L +I  +V +A G N+ RGD +T+ ++ F E     
Sbjct: 363 YVAPASAKEGATAKAKYQPRTPDELQKIEALVKSAVGFNAERGDQVTVANIPFQETDDGG 422

Query: 416 ----NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
               ++ +N+  +Q    ++L    A    AL+FLV   L+  L  H
Sbjct: 423 ASDQDKWWNAPIMQALLKNLL---IALGFFALLFLVIRPLLKTLKPH 466


>gi|295098292|emb|CBK87382.1| flagellar basal-body M-ring protein/flagellar hook-basal body
           protein (fliF) [Enterobacter cloacae subsp. cloacae NCTC
           9394]
          Length = 543

 Score =  160 bits (406), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 117/408 (28%), Positives = 196/408 (48%), Gaps = 50/408 (12%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  SP Y  LY  L   D   I   L++ NI +R +DNG ++ VP+  V + R+ LA Q
Sbjct: 28  LWAKSPDYRTLYSNLSDQDGGAIVTQLTQMNIPYRFADNGGALEVPADKVHELRLRLAQQ 87

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 88  GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 145

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    P+ASV +     RA++        A+ HLV++AV  L  G+VT++D +G 
Sbjct: 146 PSLFVREQKSPSASVTVNLEPGRALDEG---QISAVTHLVSSAVAGLPPGNVTLVDQSGH 202

Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT +N   R++    L     ++  ++  I   L   +G  N  + V A+++   ++  
Sbjct: 203 LLTQSNTAGRDLNDAQLKYAADVEGRLQRRIEAILGPVVGSSNVHAQVTAQIDFSNKEQT 262

Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQPESAVTVEQNMPHV----- 315
           E  Y P+    R++  S+    +E              ++QP  A     + P       
Sbjct: 263 EEQYAPNGDASRAVLRSRQINETEQVGGQYPGGVPGALSNQPAPANAAPISTPPANPQNG 322

Query: 316 --------SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367
                   S      PR+      + E +NYE++     T  +   ++RLS+AVVVN   
Sbjct: 323 QQTNQQTTSTANSTGPRN----SSRNETTNYEVDRTIRHTKLNTGDIQRLSVAVVVNYKT 378

Query: 368 LTE--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           L +   L  +A+Q      + +I  +   A G + +RGDT+ + +  F
Sbjct: 379 LPDGKPLPLTAEQ------MKQIEDLTREAMGFSEKRGDTLNVVNSPF 420


>gi|220904839|ref|YP_002480151.1| flagellar M-ring protein FliF [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869138|gb|ACL49473.1| flagellar M-ring protein FliF [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 547

 Score =  160 bits (405), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 114/383 (29%), Positives = 195/383 (50%), Gaps = 17/383 (4%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           ++  P Y  LY  L   D + +  AL    + +RI+DNG++I VP  +V   RI +A +G
Sbjct: 44  WMGRPEYRVLYSNLGPEDASVVVKALQSDKVAYRITDNGATIMVPQEVVYDQRIKIAGEG 103

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
                   G+E+FDKV   G T F+Q+I   RAL+GE+ARTI     + +ARVH+V+P  
Sbjct: 104 -GLVGQGIGFEIFDKVK-VGQTDFVQKINYTRALQGELARTISEFPSVESARVHLVIPRR 161

Query: 162 GSFRKIGARPTASVMIRAINPSV---YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
             F +    P+ASV+++ I P++    K   AI +++  +V  LD G V++ D++GK+L 
Sbjct: 162 SLFVEERQSPSASVVLKLIRPNIKVDQKEINAILNMMLMSVEGLDRGHVSITDTSGKVLY 221

Query: 219 ANEMER--NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
             E +    I    +   Q +Q  +E  I + L    G     + V A+++   + IR  
Sbjct: 222 QPEEDSLAGITTTQMEYRQTVQRNLERRIEEMLQPLFGPGRVIAKVNADMDFSQKTIRRE 281

Query: 277 VYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEE-- 334
           ++DP+    RS        RSE SQ +    +E   P V+ R   +  S+ +     E  
Sbjct: 282 LFDPERTAVRS------EYRSEESQ-QGRANLEAGSPDVNFRGDGITGSVSDQSGTREAR 334

Query: 335 QSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSA 394
            +NYEIN +      +  +L RL++AV+++ G   +  G      +    L ++ ++V  
Sbjct: 335 TTNYEINKEEQQIVSNVGELRRLTVAVLID-GTYVKADGAWTFMPRKSEELEQVRQLVHN 393

Query: 395 ATGINSRRGDTITITSMDFLENQ 417
           A G+++ RGD + ++S  F +++
Sbjct: 394 AVGLDTGRGDALEVSSAPFTDSE 416


>gi|293395603|ref|ZP_06639886.1| flagellar M-ring protein [Serratia odorifera DSM 4582]
 gi|291421922|gb|EFE95168.1| flagellar M-ring protein [Serratia odorifera DSM 4582]
          Length = 573

 Score =  160 bits (405), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 122/423 (28%), Positives = 206/423 (48%), Gaps = 56/423 (13%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  SP Y  LY  L   D   I   L++ NI +R ++NG+++ +P+  V + R+ LA Q
Sbjct: 46  LWAKSPDYRVLYSNLNDRDGGAIVTQLTQMNIPYRFAENGAALMIPAEKVHETRLRLAQQ 105

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F ++I   RALEGE++RTI+S+  +  ARVH+ +P 
Sbjct: 106 GLPKGGA-VGFELLDQ-EKFGISQFSEQINYQRALEGELSRTIESLGPVQNARVHLALPK 163

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    P+ASV +     RA++        AI ++VA++V  L  G+VTV+D  G+
Sbjct: 164 PSLFVREQKSPSASVTLNLQPGRALDDG---QINAIVYMVASSVAGLPPGNVTVVDQAGR 220

Query: 216 LLTANEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT ++   R++    L     +++  +  I   LA  +G  N R+ V A+++   ++  
Sbjct: 221 LLTQSDGSGRDLNASQLKYTSEVENRYQRRIEAILAPIVGSANVRAQVTAQIDFSIREQT 280

Query: 275 EIVYDPDSKVE----RSIRLSKDAQ----------RSETSQPESAVTVEQNMP------- 313
           +  Y P+   E    RS +LS+  Q           + ++QP +A T     P       
Sbjct: 281 DEQYQPNPTPEKAAIRSRQLSQSDQLGGQPVGGVPGALSNQPSAAPTAPIETPAADATAN 340

Query: 314 --HVSDRKVPLPRSLENT-------------DKKEEQSNYEINTKSIATTHDNYKLERLS 358
               ++   P  R   NT              +++E +NYE++     T H +  ++RLS
Sbjct: 341 TNTTANNAPPAARQTSNTATGNGNGNGQPQNSRRDETTNYEVDRTIRHTQHKSGAVQRLS 400

Query: 359 IAVVVNKGRLTEVLGRSADQGKI---DSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           +AVV+N       LG   D   +      L +I  +V  A G +  RGDT+ + +  F E
Sbjct: 401 VAVVLN------TLGSDKDGKPLPMSKQQLTQIESLVREAMGYSGTRGDTLNVVNSPFTE 454

Query: 416 NQL 418
            ++
Sbjct: 455 TEM 457


>gi|313200543|ref|YP_004039201.1| flagellar m-ring protein flif [Methylovorus sp. MP688]
 gi|312439859|gb|ADQ83965.1| flagellar M-ring protein FliF [Methylovorus sp. MP688]
          Length = 580

 Score =  160 bits (405), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 118/414 (28%), Positives = 200/414 (48%), Gaps = 40/414 (9%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  L+      D   I  +L + NI ++ S++G++I VP+S V + R+ LAAQ
Sbjct: 50  LWSQQPEYRVLFSNYADKDGGAIVASLEQMNIPYKFSESGTAILVPASQVHQVRLKLAAQ 109

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP    N G+EL +    FG++ F++++   R LEGE+ R+IQ+IS +  AR+H+ +P 
Sbjct: 110 GLPKGG-NIGFELLEN-QKFGVSQFVEQVNFQRGLEGELERSIQTISAVEVARIHLAIPK 167

Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
              F +   +PTASV++  + P      +   AI HLVA++VP L + +VTV+D  G LL
Sbjct: 168 PSVFVRDQQKPTASVLLN-LRPGRMLDQQQVSAIVHLVASSVPELPIANVTVVDQNGNLL 226

Query: 218 --TANEMERNILGKS-LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
             T  +  RN L  + L  +  +Q  I   +   +A  +G  N  +   AE++  TQ+  
Sbjct: 227 SDTDKKAGRNNLDPTQLKYIDELQQNIVRRVESIIAPMVGAKNVHAEASAEVDFSTQEQA 286

Query: 275 EIVYDPDSKVER-SIRLSKDAQRSETS-------------QPESAVTVEQNMPHVSDRKV 320
              Y P+   +  S+R  +  +   TS             QP +  T   N    ++   
Sbjct: 287 AETYRPNQAPDAMSVRSQQSNESQSTSPAGVGGVPGALSNQPPAPATAPLNTAVPANAGA 346

Query: 321 PLPRSLE----------------NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
           P   +                  NT +K   +NYE++            ++RL++AVVVN
Sbjct: 347 PGAGTPANAAAANAANATPAVPVNT-QKNVTTNYELDKTIRYVQQPMGGVKRLTVAVVVN 405

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
             ++ +  G+  ++   D+   EI+ +   A G N  RGD++T+ +  F  +Q+
Sbjct: 406 HKQVVDKNGKVTNRPLTDAEKTEISDLAKQAMGFNQERGDSLTVVNSSFAGDQI 459


>gi|303326607|ref|ZP_07357049.1| flagellar M-ring protein FliF [Desulfovibrio sp. 3_1_syn3]
 gi|302862595|gb|EFL85527.1| flagellar M-ring protein FliF [Desulfovibrio sp. 3_1_syn3]
          Length = 548

 Score =  160 bits (405), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 116/384 (30%), Positives = 198/384 (51%), Gaps = 19/384 (4%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +V  P Y  LY  L   D + +  AL    I ++++DNG++I VP  +V   RI +A +G
Sbjct: 44  WVGRPEYRVLYSNLGAEDASHVVKALQTDKIPYQLADNGATIMVPKEVVYDQRIKIAGEG 103

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
                   G+E+FDKV   G T F+Q+I   RAL+GE++RTI     + +ARVH+V+P  
Sbjct: 104 -GLVGQGIGFEIFDKVK-VGQTDFVQKINYTRALQGELSRTISEFPSVESARVHLVIPQR 161

Query: 162 GSFRKIGARPTASVMIRAINPSV---YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
             F +    P+ASV+++  NP+     K   AI +++  AV  LD G V++ D+ GK+L 
Sbjct: 162 SLFVEERQSPSASVVLKLTNPNSKPDQKEISAILNMMLMAVEGLDKGHVSITDNGGKVLY 221

Query: 219 ANEMERNILGKSLSIVQ---AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
             E E ++ G S + ++    +Q  +E  I + L    G     + V A+++   + IR 
Sbjct: 222 QPE-EDSLAGASSTQMEHRLQVQRNLERRIEEMLQPLFGPGRVIAKVNADMDFSQKTIRR 280

Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSL--ENTDKKE 333
             +DP+    RS       QRSE SQ +    +E   P  + R   +  S+  +N  ++ 
Sbjct: 281 EFFDPEKTAVRS------EQRSEESQ-QGRANLEAGAPDTNFRGDGITGSVSDQNGTRET 333

Query: 334 EQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVS 393
             +NYEIN +      +   L RL++AV+++ G   +  G+ +   +    L  + ++VS
Sbjct: 334 RTTNYEINKEEQQIVANVGDLRRLTVAVIID-GTYEKADGKWSFVPRKAEELDRVRQLVS 392

Query: 394 AATGINSRRGDTITITSMDFLENQ 417
            A G++  RGD + ++S  F +++
Sbjct: 393 NAVGLDKGRGDLLEVSSAPFTDSE 416


>gi|152980320|ref|YP_001353131.1| flagellar MS-ring protein [Janthinobacterium sp. Marseille]
 gi|151280397|gb|ABR88807.1| flagellar basal-body M-ring protein [Janthinobacterium sp.
           Marseille]
          Length = 585

 Score =  160 bits (405), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 123/439 (28%), Positives = 203/439 (46%), Gaps = 50/439 (11%)

Query: 18  GRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS 77
           GR  +L+L S  ++ IM+ +    +   P Y  L+      D   I  +L  +N+ ++ +
Sbjct: 38  GRKVMLMLGSAAVIAIMIALV--LWSQKPEYKVLFSNFSDRDGGAIMSSLQASNVPYKFA 95

Query: 78  DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137
           + G +I VP+  V + R+ LAA+GLP      G+EL +     G++ F++++   RALEG
Sbjct: 96  EGGGAILVPADKVHEIRLKLAAEGLPKGGG-VGFELMEN-QKLGVSQFLEQVNFQRALEG 153

Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIR 192
           E+AR+IQS+  + AARVH+ MP    F +   +PTASV++     RA++    +   AI 
Sbjct: 154 ELARSIQSVGAVQAARVHLAMPKASVFVRDQQKPTASVLLNLRQGRALD---QQQVSAIV 210

Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLL--TANEMERNILGKS-LSIVQAIQHEIEMNINKAL 249
           HLVA++VP L   +VT++D +G LL  T      N L  S L  VQ +Q  I   I   +
Sbjct: 211 HLVASSVPELSPKNVTIVDQSGNLLSETNKPAGSNTLDPSQLKYVQELQQSITKRIESII 270

Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYD----PDSKVERSIRLSKDAQRSE------- 298
              +G  N R+   A+++  T +    +Y     P+S   RS++ S+             
Sbjct: 271 TPIVGASNIRAEATADVDFSTSEQAAEIYKPNQVPNSATVRSLQTSESRGNGTGASGVPG 330

Query: 299 --TSQPESAVTVEQNMPHVSDRKVP----------------------LPRSLENTDKKEE 334
             T+QP    T     P ++    P                         +     +K+ 
Sbjct: 331 ALTNQPAPNATAPLTAPPLAADGTPSTATNPPAPGTPAAAAAAAAAATAAANATPTQKDT 390

Query: 335 QSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSA 394
            +N+E++            L+RLS+AVVVN  R+    G+       ++   +I  +V  
Sbjct: 391 TTNFEVDKTVRYVQQPMGGLKRLSVAVVVNYKRVVAKDGKVTIAPLSETEKNQITDLVKE 450

Query: 395 ATGINSRRGDTITITSMDF 413
           A G N  RGDT+ + +  F
Sbjct: 451 AMGYNKDRGDTLNVVNSPF 469


>gi|307822872|ref|ZP_07653103.1| flagellar M-ring protein FliF [Methylobacter tundripaludum SV96]
 gi|307736476|gb|EFO07322.1| flagellar M-ring protein FliF [Methylobacter tundripaludum SV96]
          Length = 611

 Score =  160 bits (404), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 136/487 (27%), Positives = 228/487 (46%), Gaps = 62/487 (12%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
           +G ++ R   L+L   + + + + +A   +   P Y  LY ++  SDV+ I   L++ NI
Sbjct: 48  AGLTIARQIGLMLG--LALSVAIGVAIVLWSQEPSYGRLYSEIGESDVSEILEILNKENI 105

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
            +++     +I VP   V   ++ LAAQGLP S+S  GYEL DK   FG +  ++ +   
Sbjct: 106 KYKVETGSGAIMVPMDQVSAVKLKLAAQGLPKSNS-LGYELLDKEQGFGASKGVETVRFQ 164

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKS 187
           RALEGEIARTI SI  +  ARV + +P    F +   +P+ASV++     R+++      
Sbjct: 165 RALEGEIARTIMSIQNVKTARVLLAIPAQSVFVRERKKPSASVIVNLYQGRSLDKG---Q 221

Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIEMNI 245
            E+I HLVA++VP L+   VTV+D  G+LL +N+  +  N+  K     + I+  +   I
Sbjct: 222 VESIIHLVASSVPQLEAEQVTVVDQKGQLLNSNDSSVAGNLTSKQFEYKKNIEEHLMGRI 281

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305
              L+  +G D  R  + A+++       + +++PD    RS          +TS+ +S 
Sbjct: 282 ENILSPLVGSDGMRVQISADVDFTETDRTQEMFNPDLPALRS---------EQTSEEQST 332

Query: 306 VTVEQNMPHVSDRK--------------------------VPLPRSLENTDKKEEQSNYE 339
            +  Q +P     +                           P   +   +  K    NYE
Sbjct: 333 QSAIQGVPGALSNQPTPAGAAPDPAAAPAAPGSSATTAAAAPTSTATPGSAAKNATRNYE 392

Query: 340 INTKSIATTHDNYKLERLSIAVVVNKGRLTE----VLGRSADQGKIDSYLAEINKIVSAA 395
           ++     T      L RLS+AVVV+   + +    V G+S  Q  I+ +    + +V  A
Sbjct: 393 LDKTITHTRLATGALRRLSVAVVVDDRHVPQSDGTVKGQSYSQEDINRF----SDLVKQA 448

Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTV-----QVSFMDILSRHFATVINALVFLVGTL 450
            G +S RGD +T+T++ F  ++L  +        Q  F+D++ +  A V+  L  L G L
Sbjct: 449 VGFDSSRGDQVTVTNVTFKIDELIEALPAIPVWEQGWFLDLM-KQVAAVLAVLFLLFGVL 507

Query: 451 LVTFLGL 457
             T   L
Sbjct: 508 RPTMRSL 514


>gi|62180544|ref|YP_216961.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62128177|gb|AAX65880.1| flagellar biosynthesis; basal-body MS(membrane and
           supramembrane)-ring and collar protein [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|322715020|gb|EFZ06591.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 560

 Score =  160 bits (404), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 128/430 (29%), Positives = 209/430 (48%), Gaps = 52/430 (12%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 44  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 103

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 104 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 161

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    P+ASV +     RA++        A+ HLV++AV  L +G+VT++D +G 
Sbjct: 162 PSLFVREQKSPSASVTVTLEPGRALDEG---QISAVVHLVSSAVAGLPLGNVTLVDQSGH 218

Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  
Sbjct: 219 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 278

Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309
           E  Y P+    ++   S+    SE              ++QP    E+ +          
Sbjct: 279 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 338

Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369
           QN P  S           NT ++ E SNYE++     T  +   +ERLS+AVVVN   L 
Sbjct: 339 QNTPQTSTSTNSNSAGPRNT-QRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLA 397

Query: 370 E--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG----- 422
           +   L  +ADQ K      +I  +   A G + +RGDT+ + +  F  + + N+G     
Sbjct: 398 DGKPLPLTADQMK------QIEDLTREAMGFSDKRGDTLNVVNSPF--SAVDNTGGELPF 449

Query: 423 TVQVSFMDIL 432
             Q SF+D L
Sbjct: 450 WQQQSFIDQL 459


>gi|78224304|ref|YP_386051.1| flagellar FliF M-ring protein [Geobacter metallireducens GS-15]
 gi|78195559|gb|ABB33326.1| Flagellar FliF M-ring protein [Geobacter metallireducens GS-15]
          Length = 527

 Score =  160 bits (404), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 125/428 (29%), Positives = 206/428 (48%), Gaps = 34/428 (7%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L +LL+ F    +L   +  I+  V+ V I+ F       N   Y  L+  L   D   I
Sbjct: 5   LKKLLEPF---MALPPAKRWIVGGVVGVSIIAFALLIMVANRTDYRPLFTNLTTEDAGEI 61

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L E  + +RI+ +G +I VPS  V   R+ +A+ GLP      G+E+FD+ N FG+T
Sbjct: 62  VTKLKEQKVPYRIAADGKAILVPSDKVYDLRLTMASAGLPQGGG-VGFEIFDRKN-FGMT 119

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----R 178
            F+Q++   RAL+GE++RTI  I+G+  ARVH+ +P+   F++     TASV++     R
Sbjct: 120 EFVQKLNYQRALQGELSRTIGQIAGVEQARVHLAIPEKALFKEDEKPATASVVLKVKGNR 179

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQ 238
            +N S     + + HLVA+++  ++   VTVLD  GKLL+ N    +  GK  + +Q +Q
Sbjct: 180 QLNDS---DVQGVVHLVASSIEGMNPEHVTVLDQKGKLLSKN-GPTDAAGKMTASMQEVQ 235

Query: 239 HEIEMNINKALAAFL--GVDNFRSAVVAELNMDTQQIR--EIVYDPDSKVERSIRLSKDA 294
              E    + L + L   V + +S        D +Q+   E  YDP++ V       +  
Sbjct: 236 RTYERGTEERLQSLLDKAVGSGKSVARVSAVFDFRQVERYEEKYDPETVV-------RSE 288

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPL---PRSLENTDKKEEQSNYEINTKSIATTHDN 351
           QRSE S   +  T        +  + P      +  N  K +E  NYE++  +  T    
Sbjct: 289 QRSEESMGGANATAGVPGAQTNLGRTPAGAGGATGPNGSKNDETLNYEVSRSTARTIEPV 348

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKID------SYLAEINKIVSAATGINSRRGDT 405
             L ++S+A++V+       +G+     K        + L +I  +V  A G N+ RGD 
Sbjct: 349 GALSKVSVAILVDGKYDAPAVGKDGKNAKPKYTPRSPAELQQIEALVKGAVGFNAVRGDQ 408

Query: 406 ITITSMDF 413
           +T+ ++ F
Sbjct: 409 VTVANIPF 416


>gi|253998468|ref|YP_003050531.1| flagellar M-ring protein FliF [Methylovorus sp. SIP3-4]
 gi|253985147|gb|ACT50004.1| flagellar M-ring protein FliF [Methylovorus sp. SIP3-4]
          Length = 576

 Score =  159 bits (403), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 118/414 (28%), Positives = 199/414 (48%), Gaps = 40/414 (9%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  L+      D   I  +L + NI ++ S++G++I VP+S V + R+ LAAQ
Sbjct: 46  LWSQQPEYRVLFSNYADKDGGAIVASLEQMNIPYKFSESGTAILVPASQVHQVRLKLAAQ 105

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP    N G+EL +    FG++ F++++   R LEGE+ R+IQ+IS +  AR+H+ +P 
Sbjct: 106 GLPKGG-NIGFELLEN-QKFGVSQFVEQVNFQRGLEGELERSIQTISAVEVARIHLAIPK 163

Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
              F +   +PTASV++  + P      +   AI HLVA++VP L + +VTV+D  G LL
Sbjct: 164 PSVFVRDQQKPTASVLLN-LRPGRMLDQQQVSAIVHLVASSVPELPIANVTVVDQNGNLL 222

Query: 218 --TANEMERNILGKS-LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
             T  +  RN L  + L  +  +Q  I   +   +A  +G  N  +   AE++  TQ+  
Sbjct: 223 SDTDKKAGRNNLDPTQLKYIDELQQNIVRRVESIIAPMVGAKNVHAEASAEVDFSTQEQA 282

Query: 275 EIVYDPDSKVER-SIRLSKDAQRSETS-------------QPESAVTVEQNMPHVSDRKV 320
              Y P+   +  S+R  +  +   TS             QP +  T   N    ++   
Sbjct: 283 AETYRPNQAPDAMSVRSQQSNESQSTSPAGVGGVPGALSNQPPAPATAPLNTAVPANAGA 342

Query: 321 PLPRSLE----------------NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
           P   +                  NT +K   +NYE++            ++RL++AVVVN
Sbjct: 343 PGAGTPANAAAANAANATPAVPVNT-QKNVTTNYELDKTIRYVQQPMGGVKRLTVAVVVN 401

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
             ++ +  G+  ++   D+   EI+ +   A G N  RGD++T+ +  F   Q+
Sbjct: 402 HKQVVDKNGKVTNRPLTDAEKTEISDLAKQAMGFNQERGDSLTVVNSSFAGEQI 455


>gi|148253400|ref|YP_001237985.1| flagellar MS-ring protein [Bradyrhizobium sp. BTAi1]
 gi|146405573|gb|ABQ34079.1| Flagellar basal body M-ring protein [Bradyrhizobium sp. BTAi1]
          Length = 535

 Score =  159 bits (403), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 119/410 (29%), Positives = 201/410 (49%), Gaps = 12/410 (2%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           LL F K    LG  R+  + +V    I  F      V +P    L+  L + D + I   
Sbjct: 4   LLDFLKG---LGAARLTAMIAVTAALIGFFGFVIMRVTAPQMTTLFTDLGMDDSSSIIKD 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L    I F I + GS I VP   V + R+ LA +G        GYE+FDK ++ G TSF+
Sbjct: 61  LERQGIPFEIRNEGSVILVPKDKVTRLRMKLA-EGGLPKGGGVGYEIFDKSDALGTTSFV 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
           Q I  +RALEGE+ARTI++I  I AARVH+V+P+   F +    P+AS+++R        
Sbjct: 120 QNINHLRALEGELARTIRAIDRIQAARVHLVLPERPLFSRETPEPSASIVVRVRGALDAA 179

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQAIQHEIEM 243
              AIRHLVA+AV  L    V+++D  G+LL   T  ++++ +  +  +     +  +  
Sbjct: 180 QIRAIRHLVASAVNGLKPQRVSIVDEAGQLLADGTQTDIDQQVGDERRN---TFEKRMRK 236

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            +   +++ +G    R  + A+ + +        YDP+ +V RS +  +  ++S +S+  
Sbjct: 237 QVEDIVSSVVGAGRARVQLSADFDFNRITQTSDRYDPEGRVLRSSQTRE--EQSASSESN 294

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
             VTV   +P     +       + + K EE +NYEI+  +     +  ++ R+S+AV+V
Sbjct: 295 GQVTVNNELPGNQQNQQQQQPPRDQSKKTEETNNYEISRTTKTEVTEAGRVNRISVAVLV 354

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           +        G    + +    L  I  +V +A G + +RGD + + ++ F
Sbjct: 355 DGAYSKNEKGELVYKERSKEELDRIAALVRSAIGFDQKRGDQVEVVNLKF 404


>gi|212709512|ref|ZP_03317640.1| hypothetical protein PROVALCAL_00554 [Providencia alcalifaciens DSM
           30120]
 gi|212687850|gb|EEB47378.1| hypothetical protein PROVALCAL_00554 [Providencia alcalifaciens DSM
           30120]
          Length = 563

 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 125/416 (30%), Positives = 206/416 (49%), Gaps = 36/416 (8%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  SP Y  L   L   D   I   L++ N+ ++I+DNGS+I VP+  V + R+ LA  
Sbjct: 46  LWFRSPDYRVLLSNLSAKDGGDIVSQLTQMNVPYQIADNGSAILVPADKVHELRLKLAQS 105

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP    N+G+EL DK   FG++ F ++I   RALEGE++RTI+S+S + +ARVH+ +P 
Sbjct: 106 GLPKGG-NTGFELLDK-EKFGISQFSEQINYQRALEGELSRTIESLSPVQSARVHLAIPK 163

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    PTASV +  +   +    +  AI H+V+++V  L   +V ++D TG+LLT
Sbjct: 164 PTLFVREQKLPTASVTVGLLPGRMLDEGQISAIVHMVSSSVTGLTAANVIIVDQTGRLLT 223

Query: 219 ANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            N+  +++     + + + ++  ++  I   L+  +G  N  + V A+++    +     
Sbjct: 224 NNDNSQQSANSAQIKMTKEMEAHLKERIEDILSPLVGRANIHAQVTAQMDFSKVEQTSEE 283

Query: 278 YD----PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK- 332
           Y     PD+   RS R S ++ ++    P        N P VS    P+  + ENTD K 
Sbjct: 284 YKPNQTPDAAAVRS-RQSSESLQNSNGGPSGVPGALSNQP-VSAPSAPIDGNKENTDGKT 341

Query: 333 -------------EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQG 379
                        +E +NYE++ K   T      ++RLS+AV+VN        G    + 
Sbjct: 342 AGNTRNGTLNTQRDETTNYEVDRKISHTQRQIGVVDRLSVAVIVN---YQSQEGEKGPEM 398

Query: 380 K--IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433
           K      L +I+ +   A G +++RGD+I IT      N LF   T  +    +LS
Sbjct: 399 KPLPPEMLQQIDALTREAMGYSAQRGDSINIT------NSLFTDDTPVIEEPSLLS 448


>gi|152990373|ref|YP_001356095.1| flagellar M-ring protein FliF [Nitratiruptor sp. SB155-2]
 gi|151422234|dbj|BAF69738.1| flagellar M-ring protein FliF [Nitratiruptor sp. SB155-2]
          Length = 542

 Score =  159 bits (402), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 115/387 (29%), Positives = 203/387 (52%), Gaps = 20/387 (5%)

Query: 43  VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL 102
           +++  Y  LY  L   D   I   L E  I +++  NG  I VP   +   R+ LAA+GL
Sbjct: 46  ISAEKYGVLYANLTADDAGNILTVLQEEKIPYKVEGNGKIILVPKDKIYDVRLKLAAKGL 105

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162
           P S  N G+E+FD+    G+T F + I  +RALEGE+ARTI+ I  +  ARV+I +P   
Sbjct: 106 PRSQ-NVGFEIFDE-PKMGITHFQENINYIRALEGELARTIKKIDAVQDARVNIALPKDS 163

Query: 163 SFRKIGARPTASVMIRAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLLT- 218
            F +      ASV+I +++P +  + E   AI  LV+ AVP L   +VTV+D++G++L+ 
Sbjct: 164 IFAREEDEAKASVII-SLHPGMSLTKEQVKAIVFLVSHAVPKLKSQNVTVVDNSGRVLSD 222

Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI--RE 275
              E E   +   + + +  + +IE ++   LA  LG    +  V A + ++T +I  R+
Sbjct: 223 MLEENEEKEVHDVVDLKRKFRRDIEKSVESMLARALGAQ--KVVVRANVEIETAKIDKRD 280

Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ 335
            +YDPD     S R  ++  +S   QP  +     N+P   +   P    L++  KK+  
Sbjct: 281 EIYDPDKTAVVSERKIQEKSKSIPQQPIGSPGTPTNVPATINTG-PNGTVLQDKSKKDIT 339

Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ-----GKIDSYLAEINK 390
           +NY++    I T  + +K++++++ V+++ G+  + + ++         + +  L     
Sbjct: 340 TNYDVTKSLIVTKQNVFKIKKITVGVLID-GKYIKKMDKNGTMQVEFVPRSEQELKSFEN 398

Query: 391 IVSAATGINSRRGDTITITSMDFLENQ 417
           ++ +A G + +RGD +T+ S+ F ENQ
Sbjct: 399 LIKSAIGYDPKRGDQVTVVSVPF-ENQ 424


>gi|304398855|ref|ZP_07380725.1| flagellar M-ring protein FliF [Pantoea sp. aB]
 gi|304353559|gb|EFM17936.1| flagellar M-ring protein FliF [Pantoea sp. aB]
          Length = 575

 Score =  159 bits (402), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 135/454 (29%), Positives = 213/454 (46%), Gaps = 61/454 (13%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  LY  L   D   I   L++ NI +R ++NG ++ VP + V + R+ LA Q
Sbjct: 47  LWAKQPSYSVLYNNLTDEDGGAIVTQLTQMNIPYRFAENGGALMVPEANVHELRLRLAQQ 106

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   S  G+EL DK   FG++ F +++   RALEGE+ARTI+S+  + +ARVH+ MP 
Sbjct: 107 GLPKGGS-VGFELLDK-EKFGISQFSEQVNYQRALEGELARTIESLGPVKSARVHLAMPK 164

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    P+ASV +     RA++       +AI H+V+++V  L  G+VTV+D TG+
Sbjct: 165 PTLFVREQKAPSASVTLTLQPGRALDEG---QIQAIAHMVSSSVAGLPPGNVTVVDQTGR 221

Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT ++   R++    L     ++   +  I   L   LG  N  + V A++N DT +  
Sbjct: 222 LLTRSDSAGRDLNDAQLKYSSEVEARYQQRIEAILNPILGQGNVHAQVTAQINFDTAEQT 281

Query: 275 EIVYDPDSKVERSIRLSKDAQRSETS--------------QPESAVTVEQNMP------- 313
           +  Y P++    S   S+    S+ S              QP  A T     P       
Sbjct: 282 DEKYQPNANPSNSAIRSRQTSTSDQSGSPYPGGVPGALSNQPAPANTAPVTTPNNNAANG 341

Query: 314 -----------HVSDRKVPLPRSLENTD-KKEEQSNYEINTKSIATTHDNY-KLERLSIA 360
                      + S      P S   T+ ++++  NYE++ ++I  T  N   ++RLS+A
Sbjct: 342 QAANGQNNAANNASQTTSTAPASSGPTNSRRDDTVNYELD-RTIRHTKVNVGDVQRLSVA 400

Query: 361 VVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           VVVN         R+ D+GK     +  L +I  +   A G +  RGD+I + +  F   
Sbjct: 401 VVVN--------FRADDKGKAVALNEQQLKQIEDLTREAMGYSQSRGDSINVVNSQFNTT 452

Query: 417 QLFNSG---TVQVSFMDILSRHFATVINALVFLV 447
           +   +      Q SF D L      ++ ALV  V
Sbjct: 453 EPVTTDLPFWQQQSFFDQLMDAGKWLLVALVAFV 486


>gi|322655518|gb|EFY51826.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322683020|gb|EFY79036.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|323204454|gb|EFZ89460.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
          Length = 531

 Score =  159 bits (402), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 129/438 (29%), Positives = 212/438 (48%), Gaps = 52/438 (11%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92
           + + +A   +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V +
Sbjct: 7   VAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHE 66

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
            R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +A
Sbjct: 67  LRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSA 124

Query: 153 RVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDV 207
           RVH+ MP    F +    P+ASV +     RA++        A+ HLV++AV  L  G+V
Sbjct: 125 RVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEG---QISAVVHLVSSAVAGLPPGNV 181

Query: 208 TVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAEL 266
           T++D +G LLT +N   R++    L     ++  I+  I   L+  +G  N  + V A+L
Sbjct: 182 TLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQL 241

Query: 267 NMDTQQIREIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTV 308
           +   ++  E  Y P+    ++   S+    SE              ++QP    E+ +  
Sbjct: 242 DFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIAT 301

Query: 309 E-------QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
                   QN P  S           NT ++ E SNYE++     T  +   +ERLS+AV
Sbjct: 302 PPTNQQNAQNTPQTSTSTNSNSAGPRNT-QRNETSNYEVDRTIRHTKMNVGDIERLSVAV 360

Query: 362 VVNKGRLTE--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           VVN   L +   L  +ADQ K      +I  +   A G + +RGDT+ + +  F  + + 
Sbjct: 361 VVNYKTLADGKPLPLTADQMK------QIEDLTREAMGFSDKRGDTLNVVNSPF--SAVD 412

Query: 420 NSG-----TVQVSFMDIL 432
           N+G       Q SF+D L
Sbjct: 413 NTGGELPFWQQQSFIDQL 430


>gi|222112250|ref|YP_002554514.1| flagellar m-ring protein flif [Acidovorax ebreus TPSY]
 gi|221731694|gb|ACM34514.1| flagellar M-ring protein FliF [Acidovorax ebreus TPSY]
          Length = 564

 Score =  159 bits (402), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 116/398 (29%), Positives = 197/398 (49%), Gaps = 28/398 (7%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           F+   P Y  L+  L   D   I   LS+ N+ ++ ++ G +I VP+  V   R+ LA Q
Sbjct: 50  FYSRQPDYRVLFSGLNDKDGGAIVAQLSQMNVPYKYTEGGGAILVPAERVHDVRLRLATQ 109

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP  S  +G+EL +  N FG+T F + +   R LEGE+ R+IQ+++ + +ARVH+ +P 
Sbjct: 110 GLPKGSV-TGFELME-TNRFGVTQFQERLNFQRGLEGELTRSIQALASVQSARVHLALPQ 167

Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
              F +   +P+ASV++ ++ P  +        I HLVA++VP L    V+VLD TGKLL
Sbjct: 168 QNGFFREQQKPSASVLL-SLYPGRFLDRAQLAGIVHLVASSVPELAPSAVSVLDDTGKLL 226

Query: 218 --TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD----TQ 271
             T +     +  + L+ VQ I+ +    I   L   +G +N ++ V AE++ +    T 
Sbjct: 227 SQTPDMAGAGVDAQQLAYVQQIEQQYARRILDLLEPVVGKNNVKAQVTAEVDFNQTESTV 286

Query: 272 QIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV--TVEQNMPHVSDRKV----PLP-- 323
           +  +    PD+   RS ++ +    +  +QP + V   V    P  S   +    P P  
Sbjct: 287 EQHKPNLAPDASAVRSQQVVESG-GTPGAQPPTGVPGAVTNQPPQASAAPINGANPAPTA 345

Query: 324 ------RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA- 376
                        K+E  +NYE++  +  T      ++R++ AVVVN   ++E  G+ A 
Sbjct: 346 AGGAPGSGAAGQAKRESITNYEVDKTTQVTRGGAGAIKRVNAAVVVNYQPVSEGPGKPAV 405

Query: 377 DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           ++      L ++  +V    G N  RGD++ + +  FL
Sbjct: 406 NKALTPEQLEQMTALVRETIGFNKERGDSVNLMNAPFL 443


>gi|121596094|ref|YP_987990.1| flagellar M-ring protein FliF [Acidovorax sp. JS42]
 gi|120608174|gb|ABM43914.1| flagellar M-ring protein FliF [Acidovorax sp. JS42]
          Length = 564

 Score =  159 bits (402), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 116/398 (29%), Positives = 197/398 (49%), Gaps = 28/398 (7%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           F+   P Y  L+  L   D   I   LS+ N+ ++ ++ G +I VP+  V   R+ LA Q
Sbjct: 50  FYSRQPDYRVLFSGLNDKDGGAIVAQLSQMNVPYKYTEGGGAILVPAERVHDVRLRLATQ 109

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP  S  +G+EL +  N FG+T F + +   R LEGE+ R+IQ+++ + +ARVH+ +P 
Sbjct: 110 GLPKGSV-TGFELME-TNRFGVTQFQERLNFQRGLEGELTRSIQALASVQSARVHLALPQ 167

Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
              F +   +P+ASV++ ++ P  +        I HLVA++VP L    V+VLD TGKLL
Sbjct: 168 QNGFFREQQKPSASVLL-SLYPGRFLDRAQLAGIVHLVASSVPELAPSAVSVLDDTGKLL 226

Query: 218 --TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD----TQ 271
             T +     +  + L+ VQ I+ +    I   L   +G +N ++ V AE++ +    T 
Sbjct: 227 SQTPDMAGAGVDAQQLAYVQQIEQQYARRILDLLEPVVGKNNVKAQVTAEVDFNQTESTV 286

Query: 272 QIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV--TVEQNMPHVSDRKV----PLP-- 323
           +  +    PD+   RS ++ +    +  +QP + V   V    P  S   +    P P  
Sbjct: 287 EQHKPNLAPDASAVRSQQVVESG-GTPGAQPPTGVPGAVTNQPPQASAAPINGANPAPTA 345

Query: 324 ------RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA- 376
                        K+E  +NYE++  +  T      ++R++ AVVVN   ++E  G+ A 
Sbjct: 346 AGGAPGSGAAGQAKRESITNYEVDKTTQVTRGGAGAIKRVNAAVVVNYQPVSEGPGKPAV 405

Query: 377 DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           ++      L ++  +V    G N  RGD++ + +  FL
Sbjct: 406 NKALTPEQLEQMTALVRETIGFNKERGDSVNLMNAPFL 443


>gi|253702508|ref|YP_003023697.1| flagellar M-ring protein FliF [Geobacter sp. M21]
 gi|251777358|gb|ACT19939.1| flagellar M-ring protein FliF [Geobacter sp. M21]
          Length = 522

 Score =  159 bits (402), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 124/425 (29%), Positives = 205/425 (48%), Gaps = 31/425 (7%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L +LL+ F    +L   + L++  V L  ++ F A     N   Y  L+  L   D   I
Sbjct: 5   LKKLLEPF---LALSSAKRLVVGGVALASLLGFAALIAVANKTDYRPLFANLTQEDAGEI 61

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L E  + ++IS +G +I VPS  V   R+ LA+ GLP      G+E+FD+ N FG+T
Sbjct: 62  VKKLKEQKVPYQISPDGKAILVPSDNVYDLRLSLASDGLPQGG-GIGFEIFDRKN-FGMT 119

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
            F+Q++   RAL+GE+ RTI  I+G+ +ARVH+ +P+   F++     TASV+I+  +  
Sbjct: 120 EFVQKLNYQRALQGELGRTIAQIAGVESARVHLALPEKALFQEQEKPATASVVIKMKSNR 179

Query: 184 VYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQAIQ 238
             +  E   + HLVA+++  +D   VTVLD+ GK+L   ++N+    + G      +A +
Sbjct: 180 QLREGEVQGVVHLVASSIEGMDPEQVTVLDTRGKVLSSHSSNDPTSKLAGARQDTQRAFE 239

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
              E  +   L   +G     + V A  +    +  E  YDP+S   RS       QRSE
Sbjct: 240 KTEEEKLQSLLDRVVGSGKSVARVSASFDFKQVEKYEERYDPESAAVRS------EQRSE 293

Query: 299 -----TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
                ++    A  V+ NM     R      +     K +E  NYE++  +         
Sbjct: 294 EKGGISTTASGAPGVQTNM----GRAQGAAGTTGGGSKTDETLNYEVSRSTARIVEPVGS 349

Query: 354 LERLSIAVVVNKGRLTEVLGRSAD-----QGKIDSYLAEINKIVSAATGINSRRGDTITI 408
           L ++S+A++V+ G+     G   D     Q +    + +I  +V +A G N+ RGD +T+
Sbjct: 350 LSKVSVAILVD-GKYELAPGAKPDAAPKYQPRSPDEMQKIEALVKSAVGFNAERGDQVTV 408

Query: 409 TSMDF 413
            ++ F
Sbjct: 409 ANIPF 413


>gi|146342729|ref|YP_001207777.1| flagellar MS-ring protein [Bradyrhizobium sp. ORS278]
 gi|146195535|emb|CAL79562.1| Flagellar basal body M-ring protein [Bradyrhizobium sp. ORS278]
          Length = 532

 Score =  159 bits (402), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 129/462 (27%), Positives = 223/462 (48%), Gaps = 20/462 (4%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           LL F K    LG  R+  + +V    +  F      V +P    L+  L + D + I   
Sbjct: 4   LLDFLKG---LGAARLAAMVAVTAALVGFFGFVIMRVTAPQMTTLFTDLSMDDSSSIIKD 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L    I F I + GS I VP   V + R+ LA +G        GYE+FDK ++ G TSF+
Sbjct: 61  LERQGIAFEIRNEGSVIMVPKDKVTRLRMKLA-EGGLPKGGGVGYEIFDKSDALGTTSFV 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
           Q I  +RALEGE+ARTI++I  + AARVH+V+P+   F +    P+AS+++R        
Sbjct: 120 QNINHLRALEGELARTIRAIDRVQAARVHLVLPERPLFSRETPEPSASIVVRVRGSLEAN 179

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQAIQHEIEM 243
              AIRHLVA+AV  L    V+++D  G+LL   T  ++++ +  +  +   A +  +  
Sbjct: 180 QIRAIRHLVASAVNGLKPQRVSIVDEAGQLLADGTQTDIDQQVGDERRN---AFEKRMRK 236

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            +   +++ +G    R  + A+ + +        YDP+ +V RS +  +  ++S TS+  
Sbjct: 237 QVEDIVSSVVGSGRARVQLSADFDFNRITQTSDRYDPEGRVLRSSQTRE--EQSATSESN 294

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
             VTV   +P     +       + + K EE +NYEI+  +     +  ++ R+S+AV+V
Sbjct: 295 GQVTVNNELPGNQQNQQGQQPK-DQSKKTEETNNYEISRTTKTEVTEAGRVNRISVAVLV 353

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           +        G    + +    L  I  +V +A G + +RGD + + ++ F +  +    +
Sbjct: 354 DGAYSKNEKGDLVYKERSKEELDRIAALVRSAIGFDQKRGDQVEVVNLKFADGPVVPQIS 413

Query: 424 VQVSFMDILSRHFAT-----VINALVFLVGTLLVTFLGLHAL 460
               F+ +L  HF       VI   V ++  ++V F+ +  L
Sbjct: 414 EPTGFLGML--HFTKDDVMYVIELAVMMLLGIVVVFMVVRPL 453


>gi|16765307|ref|NP_460922.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|120326|sp|P15928|FLIF_SALTY RecName: Full=Flagellar M-ring protein
 gi|154023|gb|AAA27096.1| fliF flagellar M-protein precursor [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|16420504|gb|AAL20881.1| basal-body MS (membrane and supramembrane)-ring and collar protein
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|261247135|emb|CBG24958.1| flagellar basal-body M-ring protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267993958|gb|ACY88843.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301158483|emb|CBW17993.1| flagellar basal-body M-ring protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312912959|dbj|BAJ36933.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|332988858|gb|AEF07841.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 560

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 129/433 (29%), Positives = 210/433 (48%), Gaps = 58/433 (13%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 44  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 103

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 104 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 161

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    P+ASV +     RA++        A+ HLV++AV  L  G+VT++D +G 
Sbjct: 162 PSLFVREQKSPSASVTVTLEPGRALD---EGQISAVVHLVSSAVAGLPPGNVTLVDQSGH 218

Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  
Sbjct: 219 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 278

Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309
           E  Y P+    ++   S+    SE              ++QP    E+ +          
Sbjct: 279 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 338

Query: 310 QNMPHVS---DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
           QN P  S   +     PRS +    + E SNYE++     T  +   +ERLS+AVVVN  
Sbjct: 339 QNTPQTSTSTNSNSAGPRSTQ----RNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYK 394

Query: 367 RLTE--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG-- 422
            L +   L  +ADQ K      +I  +   A G + +RGDT+ + +  F  + + N+G  
Sbjct: 395 TLADGKPLPLTADQMK------QIEDLTREAMGFSDKRGDTLNVVNSPF--SAVDNTGGE 446

Query: 423 ---TVQVSFMDIL 432
                Q SF+D L
Sbjct: 447 LPFWQQQSFIDQL 459


>gi|163738046|ref|ZP_02145462.1| flagellar M-ring protein FliF [Phaeobacter gallaeciensis BS107]
 gi|161388662|gb|EDQ13015.1| flagellar M-ring protein FliF [Phaeobacter gallaeciensis BS107]
          Length = 561

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 145/491 (29%), Positives = 238/491 (48%), Gaps = 31/491 (6%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           R R++ + + ++V I+  +A     N+P    LY  LE      +  AL +   ++ +  
Sbjct: 14  RKRLIAVGATVIV-ILSVLAMSRVANTPTMQLLYAGLESGSAGDVVRALEQRGTEYEV-- 70

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
            G SI VP++   + R+ LA++GLP++    GYEL D ++ FG TS M +    RA EGE
Sbjct: 71  RGGSIYVPATARDELRMTLASEGLPANGGR-GYELLDSLSGFGTTSQMFDAAYWRAKEGE 129

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN-PSVYKSAEAIRHLVAA 197
           +ARTI +   +  ARVHI       F++  A PTASV +  +  P     A AIR L+++
Sbjct: 130 LARTIVASPHVTQARVHIANTGSNPFQRT-AEPTASVSVVPMGSPITPAQANAIRFLISS 188

Query: 198 AVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDN 257
           AV  L + +V V+D+ G L+ + E    +   +    Q+I+      + + + A +G  N
Sbjct: 189 AVTGLAVENVAVIDANGALIGSPEAAAAVGAGTDDRSQSIRE----RVMRLVEARVGHGN 244

Query: 258 FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA-VTVEQNMPHVS 316
               V  E   DT+ IRE   DP+S+V  S  +    +R+++SQ +S  VTV  N+P   
Sbjct: 245 AVVEVSVETVTDTESIREKRIDPESRVAISTDVE---ERADSSQNQSGEVTVASNIPD-- 299

Query: 317 DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA 376
                   S  +T    E+ NYEI+            ++RL++AV++N   +T   G + 
Sbjct: 300 GDAASGDGSKASTSATRERVNYEISETEKEILRGPGAIKRLTVAVLLNGVPITTATGETV 359

Query: 377 DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF--LENQLFNSGT-VQVSFMDILS 433
            + + +  L  + +++SAA G +  RGD IT+ SM+   +E Q    GT V  S  D + 
Sbjct: 360 MEPRSEEELGALRELISAAVGFSEERGDVITLKSMEMPTVEPQ----GTVVSASIFDNIY 415

Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRL--HNIDDAKKGEVGGKSILSPPPISSAVTT 491
               ++I      + TL+   LGL  +R +  +       G  GG ++   P +      
Sbjct: 416 LDAMSLIQMAALALVTLI---LGLFVIRPILSNQASVPALGAPGGDAMDELPALGGG--- 469

Query: 492 GLMPNDNIALD 502
           G M N N+  D
Sbjct: 470 GFMANPNLGAD 480


>gi|197285489|ref|YP_002151361.1| flagellar MS-ring protein [Proteus mirabilis HI4320]
 gi|194682976|emb|CAR43401.1| flagellar M-ring protein [Proteus mirabilis HI4320]
          Length = 573

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 142/551 (25%), Positives = 253/551 (45%), Gaps = 62/551 (11%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            ++ SP Y  LY  L   D   I   L++ N+ +R+S NGS+I VP + V + R+ LA  
Sbjct: 46  LWLQSPDYKVLYSNLSDKDGGEIVTQLTQMNVPYRLSQNGSAIMVPDNQVHELRLKLAQA 105

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   + +G+EL DK   FG++ F ++I   RALEGE+ARTI+++  +  ARVH+ +P 
Sbjct: 106 GLPKGGA-AGFELLDK-EKFGISQFSEQINYQRALEGELARTIETLGPVQNARVHLALPK 163

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +  +        +  AI H+VA++V  +   +VT++D +GKLLT
Sbjct: 164 PSLFVREQKSPSASVTVGLLQGRALDEGQINAIVHIVASSVAGMPDSNVTIVDQSGKLLT 223

Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
             + + R++    L  VQ ++   +  I   L   +G  N  + V A+++    +     
Sbjct: 224 QPDALGRDLNSIQLKYVQELESRYQQRIETLLGPIVGRGNVHAQVTAQVDFSHTEETAEE 283

Query: 278 YDPDSKVERSIRLSKDAQRSE--------------TSQP--ESAVTVEQNMPHVSDRKV- 320
           Y P+    ++   SK   +SE              ++QP       +E+     +D K  
Sbjct: 284 YKPNQPPNQAAVRSKQVSQSEQNGGMLAGGVPGALSNQPVAPPQAPIEKAKDTTADEKTT 343

Query: 321 ------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN------KGRL 368
                  + R+  +  + +E +NYE++ +          +ERLS+AV+VN      K + 
Sbjct: 344 STNANRSMTRNPNSNSRLDETTNYEVDRRIRHVKRPVGNIERLSVAVIVNYKTVEDKKKA 403

Query: 369 TEVLGRSADQGKI---DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425
           TE      +  ++   D  L +I  +V  A G +  RGD++++       N  FN     
Sbjct: 404 TEGEEPIVENKQVPLTDEQLQQIESLVREAMGYSQERGDSLSVV------NSQFNDTEEP 457

Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL--HNIDDAKKGEVGG-KSILSP 482
           V  + +       ++   + L   LL+  +     R+L    ++  ++ EV   K+IL  
Sbjct: 458 VISVPVWEN--PQILAKALDLGRWLLLVIIAWILWRKLVKPQLEKRREAEVAAQKAILK- 514

Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542
                   T L   D++  + +  D  S  +  + R+++ +  Q   R+  M E +    
Sbjct: 515 --------TKLEVTDDV--NEAELDEESRRKQARQRVSAELQSQ---RIREMAEKDPRVV 561

Query: 543 AKILRKWARSE 553
           A ++R+W   E
Sbjct: 562 AMVIRQWMSKE 572


>gi|205360218|ref|ZP_02681717.2| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|205350665|gb|EDZ37296.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 579

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 129/433 (29%), Positives = 211/433 (48%), Gaps = 58/433 (13%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 63  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 122

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 123 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 180

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    P+ASV +     RA++        A+ HLV++AV +L  G+VT++D +G 
Sbjct: 181 PSLFVREQKSPSASVTVTLEPGRALD---EGQISAVVHLVSSAVASLPPGNVTLVDQSGH 237

Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  
Sbjct: 238 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 297

Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309
           E  Y P+    ++   S+    SE              ++QP    E+ +          
Sbjct: 298 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 357

Query: 310 QNMPHVS---DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
           QN P  S   +     PRS +    + E SNYE++     T  +   +ERLS+AVVVN  
Sbjct: 358 QNTPQTSTSTNSNSAGPRSTQ----RNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYK 413

Query: 367 RLTE--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG-- 422
            L +   L  +ADQ K      +I  +   A G + +RGDT+ + +  F  + + N+G  
Sbjct: 414 TLADGKPLPLTADQMK------QIEDLTREAMGFSDKRGDTLNVVNSPF--SAVDNTGGE 465

Query: 423 ---TVQVSFMDIL 432
                Q SF+D L
Sbjct: 466 LPFWQQQSFIDQL 478


>gi|221636057|ref|YP_002523933.1| flagellar M-ring protein FliF [Thermomicrobium roseum DSM 5159]
 gi|221157932|gb|ACM07050.1| flagellar M-ring protein FliF [Thermomicrobium roseum DSM 5159]
          Length = 530

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 120/393 (30%), Positives = 196/393 (49%), Gaps = 27/393 (6%)

Query: 48  YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           Y  L+  L   D   I   L +  + +++S++G++ISVP   V K R+ LAAQGLP S +
Sbjct: 50  YAPLFTGLSADDAAAIIDQLRQQGVPYKLSNDGTTISVPVEQVAKLRLALAAQGLPKSGT 109

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
             G+ELFD+ +SFG+T F Q +   RALEGE+ARTI  + G+ +ARVH+V+P+   F   
Sbjct: 110 -LGFELFDR-SSFGVTDFQQRVNYQRALEGELARTISQLDGVRSARVHLVIPEESLFSD- 166

Query: 168 GARPTASVMIRAINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLLTANEMER 224
             +PT + ++  + P    + E +R   HLV+A+VP L    VTV+D +G  L +     
Sbjct: 167 QQQPTTAAVVLQLKPGSRLTDEQVRGVVHLVSASVPGLQPEHVTVVDESGNALWSGGGVA 226

Query: 225 NILGKS--LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS 282
              G S  L   +A +  +   +   +A  +G +N    V A  + D +Q+   +Y P+ 
Sbjct: 227 AAGGMSDHLKAQRAFETAMATQLQTVVARVVGNNNAAVQVSASFDWDQRQVDSEIYSPNG 286

Query: 283 KVERSIRLSKDAQRSE--TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEI 340
              +     +  Q SE   S P     V+ N+    +      ++ + ++ +E   NYE+
Sbjct: 287 TQPQVRSQQERVQTSEGTASGPIGIPGVDSNVGSYQEGAA--QQNQQRSELRETTVNYEL 344

Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE-INKIVSAATGIN 399
           + +         K++RLS+AVV+N                +D  +AE +  +V+AA GI 
Sbjct: 345 SRQVERVVQAPGKVQRLSVAVVLNS-------------AAVDPAVAEQVRDLVAAAAGIV 391

Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDIL 432
             RGD +T++ + F       S   Q + MD L
Sbjct: 392 PERGDQVTVSVVPFTTATAEESAA-QPTLMDRL 423


>gi|194451642|ref|YP_002046020.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|195873172|ref|ZP_02696421.2| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|205357978|ref|ZP_03223896.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205359405|ref|ZP_02669752.2| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194409946|gb|ACF70165.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|195633848|gb|EDX52200.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|205328375|gb|EDZ15139.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205336392|gb|EDZ23156.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|323130248|gb|ADX17678.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
          Length = 579

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 129/433 (29%), Positives = 210/433 (48%), Gaps = 58/433 (13%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 63  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 122

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 123 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 180

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    P+ASV +     RA++        A+ HLV++AV  L  G+VT++D +G 
Sbjct: 181 PSLFVREQKSPSASVTVTLEPGRALD---EGQISAVVHLVSSAVAGLPPGNVTLVDQSGH 237

Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  
Sbjct: 238 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 297

Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309
           E  Y P+    ++   S+    SE              ++QP    E+ +          
Sbjct: 298 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 357

Query: 310 QNMPHVS---DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
           QN P  S   +     PRS +    + E SNYE++     T  +   +ERLS+AVVVN  
Sbjct: 358 QNTPQTSTSTNSNSAGPRSTQ----RNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYK 413

Query: 367 RLTE--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG-- 422
            L +   L  +ADQ K      +I  +   A G + +RGDT+ + +  F  + + N+G  
Sbjct: 414 TLADGKPLPLTADQMK------QIEDLTREAMGFSDKRGDTLNVVNSPF--SAVDNTGGE 465

Query: 423 ---TVQVSFMDIL 432
                Q SF+D L
Sbjct: 466 LPFWQQQSFIDQL 478


>gi|149194458|ref|ZP_01871555.1| flagellar M-ring protein [Caminibacter mediatlanticus TB-2]
 gi|149135633|gb|EDM24112.1| flagellar M-ring protein [Caminibacter mediatlanticus TB-2]
          Length = 559

 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 125/387 (32%), Positives = 203/387 (52%), Gaps = 39/387 (10%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
           +Y  L+  L+  D   I   L +  I ++I +NG  I VP  +VGK R+ +AAQGLP SS
Sbjct: 52  NYAILFENLKPQDAALIVQYLDKKQIPYKIPENGI-IEVPKDIVGKVRLDVAAQGLPKSS 110

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
              G+E+FDK NSFG T F Q +  +RALEGE+A+TI+SI+ +  A+V+I +P    F +
Sbjct: 111 K-VGFEIFDK-NSFGATDFEQRVKYLRALEGELAKTIESIAAVEEAKVNIAIPKESVFVE 168

Query: 167 IGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-- 221
               PTAS++I+ + P++    K  E I+ LVAAAVP L   +V ++D  G  L  N   
Sbjct: 169 NQTPPTASILIK-LRPNMTLTPKQIEGIKWLVAAAVPKLKPENVKIVDQYGNPLGENSEA 227

Query: 222 -MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ----QIREI 276
                +L   L   + ++  +E  I+  +A  +G  N    VVA++++D      + +  
Sbjct: 228 VANSELLKAELLYKKRLEKALEDKISSLIAPIVGGKN---KVVAKVSLDIDFSKVKSKAT 284

Query: 277 VYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN----MPHVSDRKVPLPRSLENT--- 329
           +Y PD+ V           RSE +  ES + ++      +P       P+  +  N    
Sbjct: 285 IYSPDNVV-----------RSEQTLEESRIGIKPKEVGGVPGAVSNIGPVQGTKNNQIVD 333

Query: 330 --DKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLA 386
             +K E  +NYEI+T +I    D+Y K++R++ AVVV+     +  G+       +  + 
Sbjct: 334 KYNKTETTTNYEIST-TIKDIKDDYPKIKRITAAVVVDGYYKKDKDGKIKFVPLSEMQIK 392

Query: 387 EINKIVSAATGINSRRGDTITITSMDF 413
            I  +V  A GI+ +RGD+++++S  F
Sbjct: 393 SIENLVKNAIGIDPKRGDSVSVSSFQF 419


>gi|163742558|ref|ZP_02149944.1| flagellar M-ring protein FliF [Phaeobacter gallaeciensis 2.10]
 gi|161384143|gb|EDQ08526.1| flagellar M-ring protein FliF [Phaeobacter gallaeciensis 2.10]
          Length = 574

 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 146/497 (29%), Positives = 240/497 (48%), Gaps = 43/497 (8%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           R R++ + + ++V I+  +A     N+P    LY  LE      +  AL +   ++ +  
Sbjct: 27  RKRLIAVGATVIV-ILSVLAMSRVANTPTMQLLYAGLESGSAGDVVRALEQRGTEYEV-- 83

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
            G SI VP++   + R+ LA++GLP++    GYEL D ++ FG TS M +    RA EGE
Sbjct: 84  RGGSIYVPATARDELRMTLASEGLPANGGR-GYELLDSLSGFGTTSQMFDAAYWRAKEGE 142

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN-PSVYKSAEAIRHLVAA 197
           +ARTI +   +  ARVHI       F++  A PTASV +  +  P     A AIR L+++
Sbjct: 143 LARTIVASPHVTQARVHIANTGSNPFQRT-AEPTASVSVVPMGSPITPAQANAIRFLISS 201

Query: 198 AVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDN 257
           AV  L + +V V+D+ G L+ + E    +   +    Q+I+      + + + A +G  N
Sbjct: 202 AVTGLAVENVAVIDANGALIGSPEAAAAVGAGTDDRSQSIRE----RVMRLVEARVGHGN 257

Query: 258 FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA-VTVEQNMPHVS 316
               V  E   DT+ IRE   DP+S+V  S  +    +R+++SQ +S  VTV  N+P   
Sbjct: 258 AVVEVSVETVTDTESIREKRIDPESRVAISTDVE---ERADSSQNQSGEVTVASNIPD-- 312

Query: 317 DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA 376
                   S  +T    E+ NYEI+            ++RL++AV++N   +T   G + 
Sbjct: 313 GDAASGDGSKASTSATRERVNYEISETEKEILRGPGAIKRLTVAVLLNGVPITTATGETV 372

Query: 377 DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF--LENQLFNSGTVQVS------F 428
            + + +  L  + +++SAA G +  RGD IT+ SM+   +E Q    GTV  +      +
Sbjct: 373 MEPRSEEELGALRELISAAVGFSEERGDVITLKSMEMPTVEPQ----GTVVSASIFDNIY 428

Query: 429 MDILSRHFATVINALVFLVGTLLVTF-LGLHALRRL--HNIDDAKKGEVGGKSILSPPPI 485
           +D +S         L+ +    LVT  LGL  +R +  +       G  GG ++   P +
Sbjct: 429 LDAMS---------LIQMAALALVTLILGLFVIRPILSNQASVPALGAPGGDAMDELPAL 479

Query: 486 SSAVTTGLMPNDNIALD 502
                 G M N N+  D
Sbjct: 480 GGG---GFMANPNLGAD 493


>gi|321224614|gb|EFX49677.1| Flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
          Length = 531

 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 128/433 (29%), Positives = 210/433 (48%), Gaps = 58/433 (13%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 15  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 74

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 75  GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 132

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    P+ASV +     RA++        A+ HLV++AV  L  G+VT++D +G 
Sbjct: 133 PSLFVREQKSPSASVTVTLEPGRALDEG---QISAVVHLVSSAVAGLPPGNVTLVDQSGH 189

Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  
Sbjct: 190 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 249

Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309
           E  Y P+    ++   S+    SE              ++QP    E+ +          
Sbjct: 250 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 309

Query: 310 QNMPHVS---DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
           QN P  S   +     PRS +    + E SNYE++     T  +   +ERLS+AVVVN  
Sbjct: 310 QNTPQTSTSTNSNSAGPRSTQ----RNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYK 365

Query: 367 RLTE--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG-- 422
            L +   L  +ADQ      + +I  +   A G + +RGDT+ + +  F  + + N+G  
Sbjct: 366 TLADGKPLPLTADQ------MKQIEDLTREAMGFSDKRGDTLNVVNSPF--SAVDNTGGE 417

Query: 423 ---TVQVSFMDIL 432
                Q SF+D L
Sbjct: 418 LPFWQQQSFIDQL 430


>gi|227355980|ref|ZP_03840372.1| flagellar M-ring protein [Proteus mirabilis ATCC 29906]
 gi|227163968|gb|EEI48870.1| flagellar M-ring protein [Proteus mirabilis ATCC 29906]
          Length = 573

 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 138/550 (25%), Positives = 252/550 (45%), Gaps = 60/550 (10%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            ++ SP Y  LY  L   D   I   L++ N+ +R+S NGS+I VP + V + R+ LA  
Sbjct: 46  LWLQSPDYKVLYSNLSDKDGGEIVTQLTQMNVPYRLSQNGSAIMVPDNQVHELRLKLAQA 105

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   + +G+EL DK   FG++ F ++I   RALEGE+ARTI+++  +  ARVH+ +P 
Sbjct: 106 GLPKGGA-AGFELLDK-EKFGISQFSEQINYQRALEGELARTIETLGPVQNARVHLALPK 163

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +  +        +  AI H+VA++V  +   +VT++D +GKLLT
Sbjct: 164 PSLFVREQKSPSASVTVGLLQGRALDEGQINAIVHIVASSVAGMPDSNVTIVDQSGKLLT 223

Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
             + + R++    L  VQ ++   +  I   L   +G  N  + V A+++    +     
Sbjct: 224 QPDALGRDLNSIQLKYVQELESRYQQRIETLLGPIVGRGNVHAQVTAQVDFSHTEETAEE 283

Query: 278 YDPDSKVERSIRLSKDAQRSE--------------TSQP--ESAVTVEQNMPHVSDRKV- 320
           Y P+    ++   SK   +SE              ++QP       +E+     +D K  
Sbjct: 284 YKPNQPPNQAAVRSKQVSQSEQNGGMLAGGVPGALSNQPVAPPQAPIEKAKDTAADEKAT 343

Query: 321 ------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN------KGRL 368
                  + R+  +  + +E +NYE++ +          +ERLS+AV+VN      K + 
Sbjct: 344 STNANRSMTRNPNSNSRLDETTNYEVDRRIRHVKRPVGNIERLSVAVIVNYKTVEDKKKA 403

Query: 369 TEVLGRSADQGKI---DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425
           TE      +  ++   D  L +I  +V  A G +  RGD++++       N  FN    +
Sbjct: 404 TEGEEPIVENKQVPLTDEQLQQIESLVREAMGYSQERGDSLSVV------NSQFND--TE 455

Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL--HNIDDAKKGEVGGKSILSPP 483
              + +       ++   + L   LL+  +     R+L    ++  ++ EV  +  +   
Sbjct: 456 EPVISVPMWENPQILAKALDLGRWLLLVIIAWILWRKLVKPQLEKRREAEVAAQKAI--- 512

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
                + T L   D++  + +  D  S  +  + R+++ +  Q   R+  M E +    A
Sbjct: 513 -----LKTKLEVTDDV--NEAELDEESRRKQARQRVSAELQSQ---RIREMAEKDPRVVA 562

Query: 544 KILRKWARSE 553
            ++R+W   E
Sbjct: 563 MVIRQWMSKE 572


>gi|253996299|ref|YP_003048363.1| flagellar M-ring protein FliF [Methylotenera mobilis JLW8]
 gi|253982978|gb|ACT47836.1| flagellar M-ring protein FliF [Methylotenera mobilis JLW8]
          Length = 546

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 142/498 (28%), Positives = 231/498 (46%), Gaps = 63/498 (12%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  L+      D   I  AL + N+ ++ SD+G++I VP++ V + R+ LAA 
Sbjct: 42  LWSQQPDYRVLFSNYSDKDGGAIVAALEKLNVPYKFSDSGTAIMVPAAQVHQVRLKLAAD 101

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP    N G+EL +    FG++ F++++   R LEGE+ R+IQSI+ +  AR+H+ +P 
Sbjct: 102 GLPKGG-NIGFELLEN-QKFGVSQFVEQVNFQRGLEGELERSIQSIAAVEVARIHLAIPK 159

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
              F +   +PTASV++  + P     A+   A+ HLVA++VPNL   +VTV+D  G LL
Sbjct: 160 PSVFVRDQQKPTASVLLN-LRPGRTLDAQQVSAVVHLVASSVPNLPTTNVTVVDQNGNLL 218

Query: 218 --TANEM-ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
             T  +M  +N+  + L  V+ IQ  I   +   ++  +G  N R+   AE++   Q+  
Sbjct: 219 SDTTKKMGAKNLDPEQLKYVEEIQQSIVKRVESIISPIVGAKNVRAEASAEIDFSVQEQA 278

Query: 275 EIVY----DPDSKVERSIRLSK-DAQRSETS--------QPESAVTVEQNMPHVSD-RKV 320
              Y     PD+   RS++ ++  +   ET+        QP  A T        +D    
Sbjct: 279 AETYKPNQQPDAAAVRSMQSNETKSANGETAGVPGALSNQPPPAATAPITTEANADANGQ 338

Query: 321 PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380
           P   +     +K   +NYE++            ++RL++AVVVN   + +        GK
Sbjct: 339 PASNATPTNTEKNLTTNYEVDKTVSYRQQPMGGVKRLNVAVVVNNMPVVD-----KKTGK 393

Query: 381 IDSYLA-------EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDIL- 432
           + SY A       +IN +   A G N  RGD++ I +  F       +G  Q     I  
Sbjct: 394 V-SYRALTVAEKTQINDLAMQAMGFNKERGDSLAIVNTPF-------AGEPQEVLPAIPL 445

Query: 433 ---SRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAV 489
               R    V + L F VG + +  +    L+ L N             + +PP   +AV
Sbjct: 446 WENPRVIENVKDVLRFAVGVIALLIIYRKVLKPLLN------------KLTTPP--KAAV 491

Query: 490 TTGLMPND--NIALDSSN 505
             G  P+   +I+ D SN
Sbjct: 492 NQGEAPDAVVSISADGSN 509


>gi|292487992|ref|YP_003530869.1| flagellar M-ring protein FliF [Erwinia amylovora CFBP1430]
 gi|292899212|ref|YP_003538581.1| flagellar M-ring protein [Erwinia amylovora ATCC 49946]
 gi|291199060|emb|CBJ46171.1| flagellar M-ring protein [Erwinia amylovora ATCC 49946]
 gi|291553416|emb|CBA20461.1| Flagellar M-ring protein FliF [Erwinia amylovora CFBP1430]
 gi|312172117|emb|CBX80374.1| Flagellar M-ring protein FliF [Erwinia amylovora ATCC BAA-2158]
          Length = 573

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 143/555 (25%), Positives = 256/555 (46%), Gaps = 68/555 (12%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  L+  L   D   I   L++ N+ ++  D G ++ VP++ V + R+ LA+Q
Sbjct: 46  LWAKQPDYRVLFSNLSNEDGGTIVTQLTQMNVPYKFDDRGGALLVPAAQVHELRLRLASQ 105

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL DK   FG++ F +++   RALEGE+ARTI ++  +  ARVH+ MP 
Sbjct: 106 GLPKGGA-VGFELLDK-EKFGISQFSEQVNYQRALEGELARTISTLGPVKDARVHLAMPK 163

Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
              F +    P+ASV + A+ P          A+ H+V+++V  +  G+VTV+D +G+LL
Sbjct: 164 PTLFVREQKSPSASVTL-ALQPGRALDEGQINAVVHMVSSSVAGMPPGNVTVVDQSGRLL 222

Query: 218 TANEM-ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           T N+   R++    L     ++   +  I   L   LG  N  + V A+++ + ++  + 
Sbjct: 223 TQNDPGGRDLNDTQLKYANDVETRYQQRIEAILGPILGNGNVHAQVTAQIDFNKREKTDE 282

Query: 277 VYDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPHVSDRKVPL----------- 322
            Y P++  +R    S+    SE     SA  V     N P  ++   P+           
Sbjct: 283 QYSPNTNPDRQAIRSRQTSNSEQLGGPSAGGVPGALSNQPAPAN-AAPVTTANPNANNAN 341

Query: 323 --------------------PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
                                +++ ++ + +  +NYE+N   + T  +  +++RLS+AVV
Sbjct: 342 AANAANANNGQPANNAASGAQKTVPSSTRSDNTTNYEVNRTILHTKMNVGEVQRLSVAVV 401

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           VN    T+  G+       DS + +I  +   A G + +RGD++ + +  F +N    + 
Sbjct: 402 VN--FRTDAAGKPI--ALKDSQIKQIENLTREAMGFSEQRGDSLNVVNSQFTDNSDLAAE 457

Query: 423 ---TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
                Q +F+D L   F      LV +V  +L   L    LRR      A + E  G ++
Sbjct: 458 LPFWKQPAFIDQL---FNAGRWLLVLIVAFILYRKLVSPQLRRKAEQQKAAE-EAAGNAL 513

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
            S              ++ +A+ S ++D  +  R  Q R+++ V  Q   R+  M E + 
Sbjct: 514 RSS-----------TQDEGVAV-SLSKDELNQERKSQHRMSAEVLSQ---RIREMSENDP 558

Query: 540 ERFAKILRKWARSEI 554
              A ++R+W + E+
Sbjct: 559 RVVALVIRQWMKDEL 573


>gi|329901251|ref|ZP_08272776.1| Flagellar M-ring protein fliF [Oxalobacteraceae bacterium IMCC9480]
 gi|327549183|gb|EGF33775.1| Flagellar M-ring protein fliF [Oxalobacteraceae bacterium IMCC9480]
          Length = 564

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 121/438 (27%), Positives = 208/438 (47%), Gaps = 33/438 (7%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           A+ + L+ F +S    GR  +L+L + I++ +M       +   P Y  L+      D  
Sbjct: 9   AVPNPLISFAES--QGGRNLLLMLGAAIVIAVM--AGVWMWSQQPDYRVLFSNFTDRDGG 64

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L + N+ ++ ++ G +I VP+  V  AR+ +AA GLP    N G+EL +     G
Sbjct: 65  AIVTQLQQMNVPYKFAEGGGAILVPADQVHDARLRIAAMGLPKGG-NVGFELMEN-QKLG 122

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           ++ F++++   RALEGE+AR++QSI  + +ARVH+ MP    F +   +PTASV++  +N
Sbjct: 123 VSQFLEQVNFQRALEGELARSVQSIGAVESARVHLAMPKASVFVRDQQKPTASVVLN-LN 181

Query: 182 PSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQ 235
           P    S +   AI HLVA++VP+L  G+++V+D  G LL+         G     L  +Q
Sbjct: 182 PGRSLSEQQVSAIVHLVASSVPDLPPGNISVIDQNGNLLSDTSKAAKATGLDPTQLKYIQ 241

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            +Q  I   I   +   +G +N R+   A+++  T +     Y P+S   +S   S+ + 
Sbjct: 242 EVQQNIVRRIESIITPIVGPNNVRAEATADIDFSTSEQAAETYKPNSPPNQSTMRSQQSS 301

Query: 296 RSETSQPESA--VTVEQNMPHVSDRKVPLPRSLEN------------------TDKKEEQ 335
            S+ S P +        N P  +      P +                       +K+  
Sbjct: 302 ESQGSNPGAGGVPGALSNQPAANATAPINPPAPAPAPAAGQGVSTGATATAAVPSQKDMT 361

Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395
            NYE++            ++R+S+AVVVN  ++T+  G+       ++   +I  +V  A
Sbjct: 362 VNYEVDKTVRYVQQPMGGVKRISVAVVVNYKQVTDKAGKVTATPLTEAERVQITDLVKEA 421

Query: 396 TGINSRRGDTITITSMDF 413
            G N  RGDT+ + +  F
Sbjct: 422 MGFNKDRGDTLNVVNSAF 439


>gi|260222430|emb|CBA31986.1| hypothetical protein Csp_D29860 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 579

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 118/416 (28%), Positives = 205/416 (49%), Gaps = 37/416 (8%)

Query: 22  ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81
           I +  ++ +V +++   A + V       LY  L   D   +   L+  N+ ++ ++ G 
Sbjct: 49  IALFVAIAVVGLVMGRQAEWRV-------LYSNLADKDGGAVIAQLTTMNVPYKYTEGGG 101

Query: 82  SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
           +I VP+  V   R+ LA+QGLP  S  SG+E+ +  N FG+T F + +T  R LEGE+ R
Sbjct: 102 AILVPADRVHDVRLKLASQGLPKGSV-SGFEMME-ANRFGMTQFQERLTFQRGLEGELTR 159

Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVA 196
           +IQ++S + +ARVH+ +P+   F +   +P+ASV++     RA++         I HLVA
Sbjct: 160 SIQALSSVSSARVHLALPNQNGFFREQQKPSASVLLSLHPGRALD---KGQLAGIVHLVA 216

Query: 197 AAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255
           ++VP ++   V+VLD TGKLL+AN +    +  + L  VQ I+      I   L   +G 
Sbjct: 217 SSVPEMNPSAVSVLDDTGKLLSANPDAAAGVDAEQLQYVQQIEQLYSRRILDMLEPLVGK 276

Query: 256 DNFRSAVVAELNM----DTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311
            N ++ V AEL+      T +  +    PDS   RS +L +    ++ + P        N
Sbjct: 277 QNVKAQVTAELDFSQTESTTESHKPNQTPDSGAVRSQQLVESTNGTQPTPPAGVPGATTN 336

Query: 312 MPHVSDRKVPL---PRSL-----------ENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
            P  +    P+   P++L            ++ KKE   NYE++     T      ++R+
Sbjct: 337 QPP-AQPAAPINGQPQTLAANGQTAAGSTNSSSKKESIINYEVDKTIRVTKGAVGAIKRI 395

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           + AVV+N   +T+  G +      ++ L ++  +V    G N  RGD++ + +  F
Sbjct: 396 NAAVVLNNQSVTDAKGVTTSVALTEAQLEKMTALVRETVGFNQDRGDSVNVVNAPF 451


>gi|224583532|ref|YP_002637330.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224468059|gb|ACN45889.1| flagellar M-ring protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 560

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 128/430 (29%), Positives = 208/430 (48%), Gaps = 52/430 (12%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 44  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 103

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 104 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 161

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    P+ASV +     RA++        A+ HLV++AV  L  G+VT++D +G 
Sbjct: 162 PSLFVREQKSPSASVTVTLEPGRALD---EGQISAVVHLVSSAVAGLPPGNVTLVDQSGH 218

Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  
Sbjct: 219 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 278

Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309
           E  Y P+    ++   S+    SE              ++QP    E+ +          
Sbjct: 279 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 338

Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369
           QN P  S           NT ++ E SNYE++     T  +   +ERLS+AVVVN   L 
Sbjct: 339 QNTPQTSTSTNSNSAGPRNT-QRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLA 397

Query: 370 E--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG----- 422
           +   L  +ADQ K      +I  +   A G + +RGDT+ + +  F  + + N+G     
Sbjct: 398 DGKPLPLTADQMK------QIEDLTREAMGFSDKRGDTLNVVNSPF--SAVDNTGGELPF 449

Query: 423 TVQVSFMDIL 432
             Q SF+D L
Sbjct: 450 WQQQSFIDQL 459


>gi|300696960|ref|YP_003747621.1| FliF: flagellar biosynthesis protein, M-ring protein, Belongs to
           the fliF family [Ralstonia solanacearum CFBP2957]
 gi|299073684|emb|CBJ53204.1| FliF: Flagellar biosynthesis protein, M-ring protein, Belongs to
           the fliF family [Ralstonia solanacearum CFBP2957]
          Length = 616

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 137/471 (29%), Positives = 227/471 (48%), Gaps = 80/471 (16%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  LY  +  SD   I  AL + N+ +R +D GS+I VP + V +AR+ LAAQ
Sbjct: 66  LWSRAPDYRVLYSNVADSDGGAIIAALQQMNVPYRFADGGSAIMVPEANVHEARLKLAAQ 125

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP     +G+EL +    FG + F +++   RALEGE+ARTIQ++  + +ARVH+ +  
Sbjct: 126 GLPKGGL-AGFELMEN-QKFGTSQFAEQVNYQRALEGELARTIQAMQEVQSARVHLALSK 183

Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
              F +   +P+ASV+++ + P         +AI HL++++VPNL + +VTV+D +G+LL
Sbjct: 184 PSVFVREQVKPSASVLLK-LYPGRMLDRSQVQAIGHLLSSSVPNLPLANVTVVDQSGRLL 242

Query: 218 TANEMERNILG---KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQI 273
           +++  + N  G     L+ V+ I+      I   L   +G DN R+ V A++++D T+Q+
Sbjct: 243 SSS-FQDNASGLDPTQLNYVRDIEQGYIKRIEAILGPVVGEDNVRAQVTADVDLDNTEQM 301

Query: 274 REIV---YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVP--------- 321
            E      DP + V RS   S+  Q    +Q         N P  + R +P         
Sbjct: 302 AETYRPNQDPANGVVRSTHTSESTQSKAGAQ-GGVPGALSNQPPTAPRMLPTAPAPASQQ 360

Query: 322 --------LPRSLENTDKKEEQS--------------------NYEINTKSIATTHDNYK 353
                     ++  N    ++Q                     NYE++     T      
Sbjct: 361 AAAGQNGQNGQNGPNAQNGQQQGAATGQAATNNVESSARDTTVNYEVDKTVRRTRAAVGT 420

Query: 354 LERLSIAVVVN---KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
           + RLS+AVVVN    G+  + L         D+ + ++N +V  A G +++RGD++ + +
Sbjct: 421 VRRLSVAVVVNYRADGKTWKPLS--------DADMVKLNALVKDAVGYDAKRGDSVNVVN 472

Query: 411 MDFLENQLFNSGTVQVSFMDI-LSR-----HFATVINALVFLVGTLLVTFL 455
             F       SGT+  S  D+ L +     H+A  I A  +  G L + FL
Sbjct: 473 SQF-------SGTLPTSKDDLPLWKQPEMIHYA--IQAAKY--GALAIGFL 512


>gi|218887376|ref|YP_002436697.1| flagellar M-ring protein FliF [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758330|gb|ACL09229.1| flagellar M-ring protein FliF [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 539

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 122/428 (28%), Positives = 216/428 (50%), Gaps = 17/428 (3%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           + +A + +  + +F    F++N P Y  LY  L   D +R+   L    + +++   GSS
Sbjct: 25  IFIAGLAVAVVAVFFGLVFWMNRPDYRVLYSNLSPEDASRVVKLLQADKVAYKLESGGSS 84

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I+VP+  V   R+ +A +G        G+E+FD+V   G T F+Q+I   RAL+GE++RT
Sbjct: 85  ITVPADKVYDLRLKVAGEG-NLVGQGIGFEIFDQVK-VGQTDFVQKINYQRALQGELSRT 142

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAV 199
           I     + +ARVH+V+P    F +   +P+ SV+++  + S     K  +AI +LV  AV
Sbjct: 143 ISEFPNVESARVHLVIPHRSLFIEEQQKPSVSVVLKLRDSSKKLESKDVQAIVNLVVMAV 202

Query: 200 PNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ---AIQHEIEMNINKALAAFLGVD 256
             LD   V++ D+TGK+L A + + +I G + + +     +Q  +E  I + L   LG  
Sbjct: 203 EGLDKYKVSIADTTGKILYAPDEDGSITGMTTTQLDHKLRMQQTLERRIEELLYPVLGAG 262

Query: 257 NFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVS 316
              + V A+L+   + IR+ +YDP+  V RS + S+++QR  ++       +E   P  +
Sbjct: 263 KIIAKVNADLDFSQRTIRKELYDPEKTVVRSEQRSEESQRGRSN-------LEAGSPDAN 315

Query: 317 DR-KVPL-PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR 374
            R   P    S +  +++   +NYEIN +          + RL++AV+V+        G+
Sbjct: 316 FRGDSPTGGASTQEGNRETRTTNYEINKEEQNIVAQVGDISRLTVAVIVDGTYEKGADGQ 375

Query: 375 SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSR 434
            A   +    +  I ++V+ A G +  RGDTI ++S+ F    +    ++    MD   R
Sbjct: 376 WAFVPRKAEDVERIRQLVANAVGYDRARGDTIEVSSISFGGPDVPQESSLPQLVMDYALR 435

Query: 435 HFATVINA 442
               ++NA
Sbjct: 436 LGKPLLNA 443


>gi|149928162|ref|ZP_01916408.1| flagellar M-ring protein FliF [Limnobacter sp. MED105]
 gi|149823147|gb|EDM82385.1| flagellar M-ring protein FliF [Limnobacter sp. MED105]
          Length = 575

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 113/412 (27%), Positives = 201/412 (48%), Gaps = 28/412 (6%)

Query: 28  VILVPIMLFMAARF--FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISV 85
           +I VP+++ + A    + N   Y  L+  L   D   I  AL++  + +  +  G++I V
Sbjct: 38  LIGVPLLIAVIASLLMWANQTSYRVLFSGLNDQDGGAIVEALTQMKVPYEFNTAGTAILV 97

Query: 86  PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145
           PS+ V   R+ LA+QGLP  S  SG+E  D     G+T F +++   RALEGE+ R+IQS
Sbjct: 98  PSNKVYDTRLALASQGLPKGSV-SGFEAMDN-QKLGITQFQEQVNYQRALEGELVRSIQS 155

Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLD 203
           IS + +ARVH+ +P    F +    P+AS+++           +   I HLVA+++P ++
Sbjct: 156 ISAVQSARVHLAIPKPSIFIREKQTPSASIVLNLFGSRTLSEPQINGIVHLVASSLPGMN 215

Query: 204 MGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAV 262
             DV+++D +G+LLT   ++E  +    L+    I+  +   I   L+   G +N R+ V
Sbjct: 216 PEDVSIVDQSGRLLTGKTQLESGLNPTQLAYTNQIEQSLTSRIVDILSPVFGSENVRATV 275

Query: 263 VAELNMDTQQIREIVYDPDSKVE----RSIRLSKDAQRSETSQP-------------ESA 305
            A ++    +  + +Y P+        RS ++S+    S  + P             E+A
Sbjct: 276 TANMDYSMSERTDEIYKPNGDTTQATIRSQQISESNDGSSNANPQGIPGVMANTPPGEAA 335

Query: 306 VTVEQN----MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
             + QN    + +  +     P    ++ +K+   NYE++     T     K+ERLS AV
Sbjct: 336 ANIGQNPQQALANGVNGGTSTPTQTNSSTRKDSTVNYEVDKSVQYTKSQVGKIERLSAAV 395

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           VVN   +T+  G +         + +++ +V  A G + +RGD + + +  F
Sbjct: 396 VVNYKTITDPKGETRQVPLTPEEITQLDSLVKQAIGFDEQRGDAVNVVNQAF 447


>gi|194445262|ref|YP_002041234.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194736346|ref|YP_002115003.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197301177|ref|ZP_02664267.2| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|204931028|ref|ZP_03221854.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|194403925|gb|ACF64147.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194711848|gb|ACF91069.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197288091|gb|EDY27478.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|204320072|gb|EDZ05277.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 579

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 133/449 (29%), Positives = 215/449 (47%), Gaps = 55/449 (12%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 63  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 122

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 123 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 180

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    P+ASV +     RA++        A+ HLV++AV  L  G+VT++D +G 
Sbjct: 181 PSLFVREQKSPSASVTVTLEPGRALD---EGQISAVVHLVSSAVAGLPPGNVTLVDQSGH 237

Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  
Sbjct: 238 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 297

Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309
           E  Y P+    ++   S+    SE              ++QP    E+ +          
Sbjct: 298 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 357

Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369
           QN P  S           NT ++ E SNYE++     T  +   +ERLS+AVVVN   L 
Sbjct: 358 QNTPQTSTSTNSNSAGPRNT-QRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLA 416

Query: 370 E--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG----- 422
           +   L  +ADQ K      +I  +   A G + +RGDT+ + +  F  + + N+G     
Sbjct: 417 DGKPLPLTADQMK------QIEDLTREAMGFSDKRGDTLNVVNSPF--SAVDNTGGELPF 468

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLL 451
             Q SF+D L    A     LV +V  +L
Sbjct: 469 WQQQSFIDQL---LAAGRWLLVLVVAWIL 494


>gi|39648187|emb|CAE26707.1| putative flagellar M-ring protein [Rhodopseudomonas palustris
           CGA009]
          Length = 522

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 127/444 (28%), Positives = 216/444 (48%), Gaps = 14/444 (3%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           +I  +V LV    F+  R  V+ P    LY  L V D + I   L    I F + ++G+ 
Sbjct: 3   MIAVTVALVGFFAFVIMR--VSQPQMTTLYTDLSVEDSSSIIKELERQGIPFEMRNDGAI 60

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           + VP   V + R+ LA +G        GYE+FDK ++ G TSF+Q I  +RALEGE++RT
Sbjct: 61  LLVPKDKVTRLRMKLA-EGGLPKGGGVGYEIFDKSDALGTTSFVQNINHLRALEGELSRT 119

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNL 202
           I++I  + AARVH+V+P+   F +    P+AS+++R       +   AIRHLVA+AV  L
Sbjct: 120 IRAIDRVQAARVHLVLPERPLFSREAPEPSASIVLRVRGALEPQQVRAIRHLVASAVNGL 179

Query: 203 DMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ--AIQHEIEMNINKALAAFLGVDNFRS 260
               V+++D  G+LL         +  + S  +  A +  +   I   +++ +G    R 
Sbjct: 180 KPQRVSIVDEAGQLLADGSASGEQVEGATSDERRAAFEKRMRNQIEGIVSSVVGSGRARV 239

Query: 261 AVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV 320
            V A+ + +        +DP+ +V RS +  +++  + TS  +  VTV   +P  +  + 
Sbjct: 240 QVSADFDYNKITQTSDKFDPEGRVLRSSQTREES--AATSAADGQVTVNNELPGANQGQG 297

Query: 321 PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380
              R +  + K EE +NYEI+  +     +  ++ RLS+AV+V+        G      +
Sbjct: 298 AGARDV--SKKSEETNNYEISRVTKTEVTEAGRVNRLSVAVLVDGAYTKNDKGELVYAER 355

Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440
               L  I  +V +A G + +RGD I + ++ F E             M +       ++
Sbjct: 356 PKEQLDRIAALVRSAIGFDQKRGDQIEVVNLKFAEAPQVEKLPEPAGLMGMFQFTKDDIM 415

Query: 441 N----ALVFLVGTLLVTFLGLHAL 460
           N     ++FL+G L+V F+ +  L
Sbjct: 416 NMIQLGVMFLLG-LVVLFMVIRPL 438


>gi|198243509|ref|YP_002215117.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|197938025|gb|ACH75358.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
          Length = 576

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 133/449 (29%), Positives = 215/449 (47%), Gaps = 55/449 (12%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 60  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 119

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 120 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 177

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    P+ASV +     RA++        A+ HLV++AV  L  G+VT++D +G 
Sbjct: 178 PSLFVREQKSPSASVTVTLEPGRALD---EGQISAVVHLVSSAVAGLPPGNVTLVDQSGH 234

Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  
Sbjct: 235 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 294

Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309
           E  Y P+    ++   S+    SE              ++QP    E+ +          
Sbjct: 295 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 354

Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369
           QN P  S           NT ++ E SNYE++     T  +   +ERLS+AVVVN   L 
Sbjct: 355 QNTPQTSTSTNSNSAGPRNT-QRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLA 413

Query: 370 E--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG----- 422
           +   L  +ADQ K      +I  +   A G + +RGDT+ + +  F  + + N+G     
Sbjct: 414 DGKPLPLTADQMK------QIEDLTREAMGFSDKRGDTLNVVNSPF--SAVDNTGGELPF 465

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLL 451
             Q SF+D L    A     LV +V  +L
Sbjct: 466 WQQQSFIDQL---LAAGRWLLVLVVAWIL 491


>gi|194469863|ref|ZP_03075847.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|200390157|ref|ZP_03216768.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205358799|ref|ZP_02659200.2| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|194456227|gb|EDX45066.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|199602602|gb|EDZ01148.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205331875|gb|EDZ18639.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
          Length = 579

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 122/409 (29%), Positives = 199/409 (48%), Gaps = 51/409 (12%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 63  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 122

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 123 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 180

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    P+ASV +     RA++        A+ HLV++AV  L  G+VT++D +G 
Sbjct: 181 PSLFVREQKSPSASVTVTLEPGRALD---EGQISAVVHLVSSAVAGLPPGNVTLVDQSGH 237

Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  
Sbjct: 238 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 297

Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309
           E  Y P+    ++   S+    SE              ++QP    E+ +          
Sbjct: 298 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 357

Query: 310 QNMPHVS---DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
           QN P  S   +     PRS +    + E SNYE++     T  +   +ERLS+AVVVN  
Sbjct: 358 QNTPQTSTSTNSNSAGPRSTQ----RNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYK 413

Query: 367 RLTE--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
            L +   L  +ADQ K      +I  +   A G + +RGDT+ + +  F
Sbjct: 414 TLADGKPLPLTADQMK------QIEDLTREAMGFSDKRGDTLNVVNSPF 456


>gi|269836582|ref|YP_003318810.1| flagellar M-ring protein FliF [Sphaerobacter thermophilus DSM
           20745]
 gi|269785845|gb|ACZ37988.1| flagellar M-ring protein FliF [Sphaerobacter thermophilus DSM
           20745]
          Length = 535

 Score =  158 bits (399), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 154/556 (27%), Positives = 259/556 (46%), Gaps = 65/556 (11%)

Query: 21  RILILASVI--LVPIMLFMAARFFVNSPH-YDNLYVKLEVSDVNRISVALSEANIDFRIS 77
           R+ ++A VI  ++ + L +A R     P  Y   +  L   D   I   L    I + +S
Sbjct: 21  RVAVIAVVITAVMALGLLIATR----PPQRYGIAFSGLSSEDAAAIVENLRAQGIPYELS 76

Query: 78  DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137
            +G +I VP+  V   R+  A+QGLP   S+ G+ELFDK +S GLT F Q +   RA+EG
Sbjct: 77  SDGGTIRVPADQVAAVRLDAASQGLPRGGSD-GFELFDK-SSLGLTDFTQRVNYQRAIEG 134

Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLV 195
           E+ RTI  I  + AARVHIV+P+   F +     TA+V+++  +      A+   I HLV
Sbjct: 135 ELERTIAKIDAVEAARVHIVIPEESLFIEEQQPTTAAVVLKLKSGRQLTEAQIRGITHLV 194

Query: 196 AAAVPNLDMGDVTVLDSTG-KLLTANEMERNILG--KSLSIVQAIQHEIEMNINKALAAF 252
           + AVPNL   ++TV+D+TG  + +  +      G  +   + QA +  +E  +   +   
Sbjct: 195 SGAVPNLQPENLTVIDNTGNPIWSGPDGGSQFAGLDERFRLQQAYEQNLERQLQALVNPI 254

Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNM 312
            G  +    V A LN D +  +  +Y PD  ++  +R S+  +   TS     VT    +
Sbjct: 255 AGPGHAVVRVSATLNWDERSSQSEIYSPDG-LQPQVR-SQQEREQRTS---GTVTETGGV 309

Query: 313 PHVSDR-----KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367
           P V +      + P   S   +  +E  +NYE++ +         +++RLS+AV++    
Sbjct: 310 PGVDENVQTFPETPGAGSQSESSSREVTTNYELSRRIEEVVQAPGQVQRLSVAVML---- 365

Query: 368 LTEVLGRSADQGKIDSYLA-EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
                    D  ++D  +A EI  ++SAA G+  +RGDTIT+T++ F  + + N   +  
Sbjct: 366 ---------DGSQVDPAVAQEIQDVISAAAGLVPQRGDTITVTAVPF--SDVGNRELIPD 414

Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR-LHNIDDAKK-----GEVGGKSIL 480
               IL   +A  + AL  L G + +  + L+  RR L   +DA +       VGG ++ 
Sbjct: 415 GGTPIL--EYA--LTALKVL-GLIAIPLVALYFARRVLVKPEDAGELTPALATVGGPAVT 469

Query: 481 SPPPISSAVTTGLMP---NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
            PP          MP      I +  +   +     + QS         + L+++ +   
Sbjct: 470 EPP----------MPALATQRITISETPPQLEDEDPS-QSTDRGLPQLPAHLQVIELANT 518

Query: 538 NEERFAKILRKWARSE 553
           +  + A++LR W   E
Sbjct: 519 DPAQVAQLLRAWMSEE 534


>gi|197264219|ref|ZP_03164293.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197242474|gb|EDY25094.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
          Length = 579

 Score =  158 bits (399), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 122/409 (29%), Positives = 199/409 (48%), Gaps = 51/409 (12%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 63  LWAKAPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 122

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 123 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 180

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    P+ASV +     RA++        A+ HLV++AV  L  G+VT++D +G 
Sbjct: 181 PSLFVREQKSPSASVTVTLEPGRALD---EGQISAVVHLVSSAVAGLPPGNVTLVDQSGH 237

Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  
Sbjct: 238 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 297

Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309
           E  Y P+    ++   S+    SE              ++QP    E+ +          
Sbjct: 298 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 357

Query: 310 QNMPHVS---DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
           QN P  S   +     PRS +    + E SNYE++     T  +   +ERLS+AVVVN  
Sbjct: 358 QNTPQTSTSTNSNSAGPRSTQ----RNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYK 413

Query: 367 RLTE--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
            L +   L  +ADQ K      +I  +   A G + +RGDT+ + +  F
Sbjct: 414 TLADGKPLPLTADQMK------QIEDLTREAMGFSDKRGDTLNVVNSPF 456


>gi|326622865|gb|EGE29210.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 531

 Score =  158 bits (399), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 127/430 (29%), Positives = 208/430 (48%), Gaps = 52/430 (12%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 15  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 74

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 75  GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 132

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    P+ASV +     RA++        A+ HLV++AV  L  G+VT++D +G 
Sbjct: 133 PSLFVREQKSPSASVTVTLEPGRALDEG---QISAVVHLVSSAVAGLPPGNVTLVDQSGH 189

Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  
Sbjct: 190 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 249

Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309
           E  Y P+    ++   S+    SE              ++QP    E+ +          
Sbjct: 250 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 309

Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369
           QN P  S           NT ++ E SNYE++     T  +   +ERLS+AVVVN   L 
Sbjct: 310 QNTPQTSTSTNSNSAGPRNT-QRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLA 368

Query: 370 E--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG----- 422
           +   L  +ADQ      + +I  +   A G + +RGDT+ + +  F  + + N+G     
Sbjct: 369 DGKPLPLTADQ------MKQIEDLTREAMGFSDKRGDTLNVVNSPF--SAVDNTGGELPF 420

Query: 423 TVQVSFMDIL 432
             Q SF+D L
Sbjct: 421 WQQQSFIDQL 430


>gi|17548611|ref|NP_521951.1| flagellar M-ring transmembrane protein [Ralstonia solanacearum
           GMI1000]
 gi|17430859|emb|CAD17541.1| probable flagellar m-ring transmembrane protein [Ralstonia
           solanacearum GMI1000]
          Length = 611

 Score =  158 bits (399), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 138/483 (28%), Positives = 230/483 (47%), Gaps = 77/483 (15%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  LY  +  SD   I  AL + N+ +R +D GS+I VP + V +AR+ LAAQ
Sbjct: 66  LWSRAPSYRVLYSNVADSDGGAIIAALQQMNVPYRFADGGSAIMVPEANVHEARLKLAAQ 125

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP     +G+EL +    FG + F++++   RALEGE+ARTIQ++  + +ARVH+ +  
Sbjct: 126 GLPKGGL-AGFELMEN-QKFGTSQFVEQVNYQRALEGELARTIQAMQEVQSARVHLALSK 183

Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
              F +   +P+ASV+++ + P         +AI HL+A++VP+L + +VTV+D +G+LL
Sbjct: 184 PSVFVREQVKPSASVLLK-LYPGRMLDRSQVQAIGHLLASSVPDLPLANVTVVDQSGRLL 242

Query: 218 TANEMERNILG---KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQI 273
           +A+  + N  G     L+ V+ I+      I   L   +G DN R+ V A +++D T+Q+
Sbjct: 243 SAS-FQDNASGLDPTQLNYVRDIEQGYIKRIEAILGPVVGEDNVRAQVTANVDLDNTEQM 301

Query: 274 REIV---YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE--- 327
            E      DP +   RS   S+  Q    +Q         N P  + R +P   +     
Sbjct: 302 AETYRPNQDPANGAVRSTHTSESTQNKAGAQ-GGVPGALSNQPPTAPRMLPTAPAPAAQQ 360

Query: 328 ------------------------------NTDKKEEQSNYEINTKSIATTHDNYKLERL 357
                                          +  ++   NYE++     T      + RL
Sbjct: 361 AAAGQNGQNGQNGQQQGAAAGTGQAAANTAESSARDTTINYEVDKTVRRTRAAVGTVRRL 420

Query: 358 SIAVVVN---KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           S+AVVVN    G+  + L         D+ + ++N +V  A G +++RGD++ + +  F 
Sbjct: 421 SVAVVVNYRADGKTWKPLS--------DAEMTKLNALVKDAVGYDAKRGDSVNVVNSQF- 471

Query: 415 ENQLFNSGTVQVSFMDI-LSR-----HFATVINALVF---LVGTLLVTFLGLHALRRLHN 465
                 SGT+  S  D+ L +     H+A  I A  +    +G L++ F  +  L R  N
Sbjct: 472 ------SGTLPTSKDDLPLWKQPEMIHYA--IQAAKYGALAIGFLILVFAVIRPLIRSMN 523

Query: 466 IDD 468
             D
Sbjct: 524 KKD 526


>gi|146278778|ref|YP_001168937.1| flagellar MS-ring protein [Rhodobacter sphaeroides ATCC 17025]
 gi|145557019|gb|ABP71632.1| flagellar M-ring protein FliF [Rhodobacter sphaeroides ATCC 17025]
          Length = 543

 Score =  158 bits (399), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 120/399 (30%), Positives = 206/399 (51%), Gaps = 18/399 (4%)

Query: 18  GRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS 77
           GR R +++ +   + + +F  ++F  N P    LY  L+ +    +  AL    + + + 
Sbjct: 26  GRRRAIVVGATAAMFLAIFGLSQF-ANKPRMALLYAGLQGAVAGEVVAALEAQGVAYEV- 83

Query: 78  DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137
             G SI V +S   + R+ LA +GLP++ + +GYEL D ++ FG TS M +   +RA EG
Sbjct: 84  -QGDSIHVDASRRDELRMKLAGEGLPATGT-AGYELLDGLSGFGTTSQMFDAAYLRAKEG 141

Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV-YKSAEAIRHLVA 196
           E+ARTI +   + AARVHI  P      +   RPTASV +     ++  + A A +HL+A
Sbjct: 142 ELARTILASPQVKAARVHIA-PAAAQLFQRERRPTASVTVTTSGGNLTMEQARAFKHLIA 200

Query: 197 AAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVD 256
           +AV  +   DV+V+D+ G L+ A +    I G + +       E+  N+ + L A +G  
Sbjct: 201 SAVAGMQPEDVSVIDTVGGLIRAGDTGDGIAGTAGTRA----AELRRNVERLLEARVGPG 256

Query: 257 NFRSAVVAELNMDT--QQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPH 314
             R+ V   L+++T  + I E  +DP  +V  S  L +  + S ++QP   VTV  N+P 
Sbjct: 257 --RAVVEVSLDVETASETIVEKTFDPKGRVPISSELQE--KTSSSTQPAPDVTVASNLPE 312

Query: 315 VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR 374
                    +S  N+ +  E +N+E++            + RL++AV+V+  R+    G+
Sbjct: 313 GDAAGGSAGKS--NSSETRETTNFEVSQTQRELVRQPGTVRRLTVAVLVDGVRMAGEDGQ 370

Query: 375 SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
              Q + +  LA + ++V AA G++  RGD +T+ S+ F
Sbjct: 371 LTWQPRPEEELAVLRELVGAAVGLDESRGDRLTLRSLIF 409


>gi|317492408|ref|ZP_07950837.1| flagellar M-ring protein FliF [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316919747|gb|EFV41077.1| flagellar M-ring protein FliF [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 573

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 151/556 (27%), Positives = 261/556 (46%), Gaps = 79/556 (14%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  SP Y  LY  +   D   I   L++ NI +R +DNG+++ +P+  V + R+ LA QG
Sbjct: 52  WAKSPDYRVLYSNISDRDGGAIVTQLTQMNIPYRFADNGTALLIPADKVHETRLRLAQQG 111

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   +  G+EL D+   FG++ F ++I   RALEGE++RTI+++  +  ARVH+ +P  
Sbjct: 112 LPKGGA-VGFELLDQ-EKFGISQFSEQINYQRALEGELSRTIETLGPVQTARVHLALPKP 169

Query: 162 GSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
             F +   +P+ASV +     RA++        AI ++V+++V  L  G+VTV+D  G L
Sbjct: 170 SLFVREQKQPSASVTLNLQPGRALD---EGQINAIVYMVSSSVAGLPAGNVTVVDQGGHL 226

Query: 217 LTANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LT ++   R++    L     ++  I+  I   L   +G  N  + V A+++   ++  +
Sbjct: 227 LTQSDGTGRDLNATQLKYANEVESRIQRRIEAILQPMVGNGNVHAQVTAQIDNAVREQTD 286

Query: 276 IVYDPDSKVERSI--------------RLSKDAQRSETSQPESAVTVEQNMP-------- 313
             Y P+    ++               +LS     + T+QP  A T     P        
Sbjct: 287 EEYKPNQAPNQAAVRSQQLSDSSQSGGQLSGGVPGALTNQPAPAATGNITNPPQAGGANA 346

Query: 314 HVSDRKVPLPRSLENTD---------KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
           + ++ + P   +++            +++E  NYE++     T      ++RLS+AVVVN
Sbjct: 347 NTANAQRPASSTIDTNGRRSSSASNARRDETINYEVDRTIRHTQQKAGNVDRLSVAVVVN 406

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424
               T   G+S         L ++  +V  A G ++ RGDT+ + +  F  +    SG V
Sbjct: 407 Y--TTNASGKSIP--LTPQQLEQVTALVREAMGFSATRGDTLNVVNTPFTTS-AEESGDV 461

Query: 425 ----QVSFMDI---LSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
               Q SF D+   L R+   +I  + F++   LV  L L+  ++L N   A++ E    
Sbjct: 462 PFWQQSSFFDLLMTLGRYLLVLI--VAFILWRKLVKPL-LN--KQLANAQPARRVE---- 512

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
               P PI   VTT + P        SN++I  + R  Q R     ++Q   R+  M E 
Sbjct: 513 ----PTPI---VTTPVQP-----AKPSNEEI-QNRRKSQQRA---TAEQQAQRVRDMAEQ 556

Query: 538 NEERFAKILRKWARSE 553
           +    A ++R+W  +E
Sbjct: 557 DPRVVALVIRQWMSNE 572


>gi|238912458|ref|ZP_04656295.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 560

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 122/409 (29%), Positives = 199/409 (48%), Gaps = 51/409 (12%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 44  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 103

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 104 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 161

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    P+ASV +     RA++        A+ HLV++AV  L  G+VT++D +G 
Sbjct: 162 PSLFVREQKSPSASVTVTLEPGRALD---EGQISAVVHLVSSAVAGLPPGNVTLVDQSGH 218

Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  
Sbjct: 219 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 278

Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309
           E  Y P+    ++   S+    SE              ++QP    E+ +          
Sbjct: 279 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 338

Query: 310 QNMPHVS---DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
           QN P  S   +     PRS +    + E SNYE++     T  +   +ERLS+AVVVN  
Sbjct: 339 QNTPQTSTSTNSNNAGPRSTQ----RNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYK 394

Query: 367 RLTE--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
            L +   L  +ADQ K      +I  +   A G + +RGDT+ + +  F
Sbjct: 395 TLADGKPLPLTADQMK------QIEDLTREAMGFSDKRGDTLNVVNSPF 437


>gi|213419965|ref|ZP_03353031.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 551

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 128/430 (29%), Positives = 208/430 (48%), Gaps = 52/430 (12%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 44  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 103

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 104 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 161

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    P+ASV +     RA++        A+ HLV++AV  L  G+VT++D +G 
Sbjct: 162 PSLFVREQKSPSASVTVTLEPGRALD---EGQISAVVHLVSSAVAGLPPGNVTLVDQSGH 218

Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  
Sbjct: 219 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 278

Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309
           E  Y P+    ++   S+    SE              ++QP    E+ +          
Sbjct: 279 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 338

Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369
           QN P  S           NT ++ E SNYE++     T  +   +ERLS+AVVVN   L 
Sbjct: 339 QNTPQTSTSTNSNNAGPRNT-QRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLA 397

Query: 370 E--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG----- 422
           +   L  +ADQ K      +I  +   A G + +RGDT+ + +  F  + + N+G     
Sbjct: 398 DGKPLPLTADQMK------QIEDLTREAMGFSDKRGDTLNVVNSPF--SAVDNTGGELPF 449

Query: 423 TVQVSFMDIL 432
             Q SF+D L
Sbjct: 450 WQQQSFIDQL 459


>gi|213053157|ref|ZP_03346035.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|289829461|ref|ZP_06547073.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
          Length = 531

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 127/430 (29%), Positives = 208/430 (48%), Gaps = 52/430 (12%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 15  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 74

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 75  GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 132

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    P+ASV +     RA++        A+ HLV++AV  L  G+VT++D +G 
Sbjct: 133 PSLFVREQKSPSASVTVTLEPGRALDEG---QISAVVHLVSSAVAGLPPGNVTLVDQSGH 189

Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  
Sbjct: 190 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 249

Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309
           E  Y P+    ++   S+    SE              ++QP    E+ +          
Sbjct: 250 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 309

Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369
           QN P  S           NT ++ E SNYE++     T  +   +ERLS+AVVVN   L 
Sbjct: 310 QNTPQTSTSTNSNNAGPRNT-QRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLA 368

Query: 370 E--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG----- 422
           +   L  +ADQ      + +I  +   A G + +RGDT+ + +  F  + + N+G     
Sbjct: 369 DGKPLPLTADQ------MKQIEDLTREAMGFSDKRGDTLNVVNSPF--SAVDNTGGELPF 420

Query: 423 TVQVSFMDIL 432
             Q SF+D L
Sbjct: 421 WQQQSFIDQL 430


>gi|197249147|ref|YP_002146054.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197212850|gb|ACH50247.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
          Length = 579

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 128/430 (29%), Positives = 208/430 (48%), Gaps = 52/430 (12%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 63  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 122

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 123 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 180

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    P+ASV +     RA++        A+ HLV++AV  L  G+VT++D +G 
Sbjct: 181 PSLFVREQKSPSASVTVTLEPGRALD---EGQISAVVHLVSSAVAGLPPGNVTLVDQSGH 237

Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  
Sbjct: 238 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 297

Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309
           E  Y P+    ++   S+    SE              ++QP    E+ +          
Sbjct: 298 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 357

Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369
           QN P  S           NT ++ E SNYE++     T  +   +ERLS+AVVVN   L 
Sbjct: 358 QNTPQTSTSTNSNNAGPRNT-QRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLA 416

Query: 370 E--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG----- 422
           +   L  +ADQ K      +I  +   A G + +RGDT+ + +  F  + + N+G     
Sbjct: 417 DGKPLPLTADQMK------QIEDLTREAMGFSDKRGDTLNVVNSPF--SAVDNTGGELPF 468

Query: 423 TVQVSFMDIL 432
             Q SF+D L
Sbjct: 469 WQQQSFIDQL 478


>gi|120613031|ref|YP_972709.1| flagellar M-ring protein FliF [Acidovorax citrulli AAC00-1]
 gi|120591495|gb|ABM34935.1| flagellar M-ring protein FliF [Acidovorax citrulli AAC00-1]
          Length = 566

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 118/393 (30%), Positives = 194/393 (49%), Gaps = 28/393 (7%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSS 105
           P Y  L+  L   D   I   LS  N+ ++ S+ G +I VP+  V   R+ LA QGLP  
Sbjct: 56  PDYKVLFSNLSDKDGGAIVAQLSTMNVPYKYSEGGGAILVPAERVHDVRLRLATQGLPKG 115

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
           S  +G+EL +  N FG+T F + +   R LEGE+ R+IQ++S + +ARVH+ +P+   F 
Sbjct: 116 SV-TGFELME-TNRFGVTQFQERLNFQRGLEGELTRSIQALSSVQSARVHLALPNQNGFF 173

Query: 166 KIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE- 221
           +   +P+ASV++ ++ P  +        I HLVA++VP +    V+VLD TGKLL+ +  
Sbjct: 174 REQQKPSASVLL-SLYPGRFLDRTQLAGIVHLVASSVPEMSPSAVSVLDDTGKLLSQSPD 232

Query: 222 --MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM----DTQQIRE 275
                 I  + LS VQ I+ +    I   L   +G +N ++ V AE++      T +   
Sbjct: 233 TAAGSAIDAQQLSYVQQIEQQYTRRILDILEPVVGKNNVKAQVTAEVDFSQSEQTSEQHR 292

Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAV--TVEQNMPHVSDRKV----PLPRSLENT 329
               PDS   RS ++ + +  ++ +QP + V        P  S   +    P P +    
Sbjct: 293 PNQTPDSSAVRSQQVVESSGGTQGNQPPAGVPGAASNQPPQPSTAPINGANPAPTAGNGQ 352

Query: 330 D------KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK--I 381
                  K+E  +NYE++     T   +  ++R+S AVVVN   + +  G+ A Q K   
Sbjct: 353 QGQAAGSKRESITNYEVDKTVRVTRAGSGAIKRVSAAVVVNYQAIADAAGK-APQAKAFT 411

Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
              + ++  +V    G +  RGD++ I +  FL
Sbjct: 412 PEQIEQMTALVRETIGYSKDRGDSVNIMNTQFL 444


>gi|161613462|ref|YP_001587427.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|161362826|gb|ABX66594.1| hypothetical protein SPAB_01179 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 531

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 127/430 (29%), Positives = 208/430 (48%), Gaps = 52/430 (12%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 15  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 74

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 75  GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 132

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    P+ASV +     RA++        A+ HLV++AV  L  G+VT++D +G 
Sbjct: 133 PSLFVREQKSPSASVTVTLEPGRALDEG---QISAVVHLVSSAVAGLPPGNVTLVDQSGH 189

Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  
Sbjct: 190 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 249

Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309
           E  Y P+    ++   S+    SE              ++QP    E+ +          
Sbjct: 250 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 309

Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369
           QN P  S           NT ++ E SNYE++     T  +   +ERLS+AVVVN   L 
Sbjct: 310 QNTPQTSTSTNSNNAGPRNT-QRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLA 368

Query: 370 E--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG----- 422
           +   L  +ADQ      + +I  +   A G + +RGDT+ + +  F  + + N+G     
Sbjct: 369 DGKPLPLTADQ------MKQIEDLTREAMGFSDKRGDTLNVVNSPF--SAVDNTGGELPF 420

Query: 423 TVQVSFMDIL 432
             Q SF+D L
Sbjct: 421 WQQQSFIDQL 430


>gi|283785708|ref|YP_003365573.1| flagellar M-ring protein [Citrobacter rodentium ICC168]
 gi|282949162|emb|CBG88770.1| flagellar M-ring protein [Citrobacter rodentium ICC168]
          Length = 560

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 127/427 (29%), Positives = 205/427 (48%), Gaps = 53/427 (12%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V I++ M    +  SP Y  L+  L   D   I   L++ NI +R ++   +
Sbjct: 28  LIIAGSAAVAIIVAMV--LWAKSPDYRTLFSNLSDQDGGAIVTQLTQMNIPYRFTEGSGA 85

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE+ART
Sbjct: 86  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELART 143

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAA 197
           I+++  +  ARVH+ MP    F +    P+ASV I     RA++        A+ HLV++
Sbjct: 144 IETLGPVRRARVHLAMPKPSLFVREQKSPSASVTINLEPGRALDEG---QISAVVHLVSS 200

Query: 198 AVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVD 256
           AV  L  G+VT++D +G+LLT +N   R++    L     +++ I+  I   L+  +G  
Sbjct: 201 AVAGLPPGNVTLVDQSGRLLTQSNTSSRDLNDAQLKYASDVENRIQRRIESILSPIVGNG 260

Query: 257 NFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE--------------TSQP 302
           N  + V A+L+   ++  E  Y P+    ++   S+    SE              ++QP
Sbjct: 261 NVHAQVTAQLDFANKEQTEEQYRPNGDASQAALRSRQVNESEQIGSGLPGGVPGALSNQP 320

Query: 303 ESAVTVEQNMP--------------HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
             A       P                S      PR   NT ++ E SNYE++     T 
Sbjct: 321 APANAAPITTPPANQQNAQNGQNAQQTSTNNAVGPR---NT-QRNETSNYEVDRTIRHTK 376

Query: 349 HDNYKLERLSIAVVVNKGRLTE--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
            +   ++RLS+AVVVN    ++   L  +ADQ K      +I  +   A G + +RGDT+
Sbjct: 377 MNVGDIQRLSVAVVVNYKTPSDGKPLPLTADQMK------QIENLTREAMGFSDKRGDTL 430

Query: 407 TITSMDF 413
            + +  F
Sbjct: 431 NVVNSPF 437


>gi|207856518|ref|YP_002243169.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|206708321|emb|CAR32624.1| flagellar basal-body M-ring protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
          Length = 560

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 121/406 (29%), Positives = 197/406 (48%), Gaps = 45/406 (11%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 44  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 103

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 104 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 161

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    P+ASV +     RA++        A+ HLV++AV  L  G+VT++D +G 
Sbjct: 162 PSLFVREQKSPSASVTVTLEPGRALDEG---QISAVVHLVSSAVAGLPPGNVTLVDQSGH 218

Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  
Sbjct: 219 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 278

Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309
           E  Y P+    ++   S+    SE              ++QP    E+ +          
Sbjct: 279 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 338

Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369
           QN P  S           NT ++ E SNYE++     T  +   +ERLS+AVVVN   L 
Sbjct: 339 QNTPQTSTSTNSNSAGPRNT-QRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLA 397

Query: 370 E--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           +   L  +ADQ K      +I  +   A G + +RGDT+ + +  F
Sbjct: 398 DGKPLPLTADQMK------QIEDLTREAMGFSDKRGDTLNVVNSPF 437


>gi|29141395|ref|NP_804737.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213646788|ref|ZP_03376841.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|29137022|gb|AAO68586.1| flagellar basal-body M-ring protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 560

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 128/430 (29%), Positives = 208/430 (48%), Gaps = 52/430 (12%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 44  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 103

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 104 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 161

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    P+ASV +     RA++        A+ HLV++AV  L  G+VT++D +G 
Sbjct: 162 PSLFVREQKSPSASVTVTLEPGRALDEG---QISAVVHLVSSAVAGLPPGNVTLVDQSGH 218

Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  
Sbjct: 219 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 278

Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309
           E  Y P+    ++   S+    SE              ++QP    E+ +          
Sbjct: 279 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 338

Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369
           QN P  S           NT ++ E SNYE++     T  +   +ERLS+AVVVN   L 
Sbjct: 339 QNTPQTSTSTNSNNAGPRNT-QRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLA 397

Query: 370 E--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG----- 422
           +   L  +ADQ K      +I  +   A G + +RGDT+ + +  F  + + N+G     
Sbjct: 398 DGKPLPLTADQMK------QIEDLTREAMGFSDKRGDTLNVVNSPF--SAVDNTGGELPF 449

Query: 423 TVQVSFMDIL 432
             Q SF+D L
Sbjct: 450 WQQQSFIDQL 459


>gi|268316357|ref|YP_003290076.1| flagellar M-ring protein FliF [Rhodothermus marinus DSM 4252]
 gi|262333891|gb|ACY47688.1| flagellar M-ring protein FliF [Rhodothermus marinus DSM 4252]
          Length = 533

 Score =  157 bits (398), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 126/418 (30%), Positives = 192/418 (45%), Gaps = 42/418 (10%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           + +QL QF    + L   + L L +V +  I+L +   ++   P Y  L+  L  SD +R
Sbjct: 1   MFEQLKQFL---SRLSPGQRLALGAVTIGSILLLLGIAYWAGRPEYALLFGGLSPSDASR 57

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L E N+ +++ + G++I VP   V + R+  A +GL  S    GYELFD+ N+ G+
Sbjct: 58  IVETLQEENVPYQLKEGGTAIWVPRDRVYELRLRFAGEGL-VSDGPVGYELFDQ-NTLGM 115

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T FMQ +   RALEGE+ARTI S+  +  A+VH+V+P+   FR+    P+ASV++   + 
Sbjct: 116 TDFMQRLNYKRALEGELARTIMSLQQVELAKVHLVLPERSPFRETQVAPSASVLLSLKSG 175

Query: 183 S--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAI 237
           +    +  + I  LVA AV  LD  +VTVLD+ G LL+   A   E  +    L + QA+
Sbjct: 176 ARLTEEQIDGITALVAGAVEGLDPANVTVLDARGNLLSNPDAGNAELALSSTQLKLRQAL 235

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK-VERSIRLSKDAQR 296
           +  +       L   LG  N    V A LN D       + DP+S  V    RL +    
Sbjct: 236 EAHLTEKGQSMLDRVLGPGNAIVRVSATLNFDQAVTERQLIDPESATVISEERLEEAGTG 295

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
            E S   S V                              NYE++        +   +E 
Sbjct: 296 GEGSSASSMV-----------------------------RNYELSRTVERIQQNGGDVEY 326

Query: 357 LSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           L+++V++N+ R  E   G    +   +  L EI ++V  A G    RGD   I    F
Sbjct: 327 LTVSVILNQ-RFEEGPDGTPQPRPYTEDELREIEELVKNAVGFRPERGDRFAIHQTRF 383


>gi|161502909|ref|YP_001570021.1| flagellar MS-ring protein [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160864256|gb|ABX20879.1| hypothetical protein SARI_00968 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 560

 Score =  157 bits (398), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 124/424 (29%), Positives = 204/424 (48%), Gaps = 47/424 (11%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V I++ M    +  +P Y  L+  L   D   I   L++ NI +R ++   +
Sbjct: 28  LIVAGSAAVAIIVAMV--LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGA 85

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE+ART
Sbjct: 86  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELART 143

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAA 197
           I+++  + +ARVH+ MP    F +    P+ASV +     RA++        A+ HLV++
Sbjct: 144 IETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEG---QISAVVHLVSS 200

Query: 198 AVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVD 256
           AV  L  G+VT++D +G LLT +N   R++    L     ++  I+  I   L+  +G  
Sbjct: 201 AVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNG 260

Query: 257 NFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMP 313
           N  + V A+L+   ++  E  Y P+    ++   S+    SE      P        N P
Sbjct: 261 NVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQIGAGYPGGVPGALSNQP 320

Query: 314 HVSDRKVPL---PRSLENTD-------------------KKEEQSNYEINTKSIATTHDN 351
              + + P+   P + +N                     ++ E SNYE++     T  + 
Sbjct: 321 APPN-EAPIATPPGNQQNAQNTAQTSTSTNSNSTGPRNTQRNETSNYEVDRTIRHTKMNV 379

Query: 352 YKLERLSIAVVVNKGRLTE--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
             +ERLS+AVVVN   L +   L  +ADQ K      +I  +   A G + +RGDT+ + 
Sbjct: 380 GDIERLSVAVVVNYKTLADGKPLPLTADQMK------QIEDLTREAMGFSDKRGDTLNVV 433

Query: 410 SMDF 413
           +  F
Sbjct: 434 NSPF 437


>gi|56413118|ref|YP_150193.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197362044|ref|YP_002141681.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|56127375|gb|AAV76881.1| flagellar basal-body M-ring protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197093521|emb|CAR58982.1| flagellar basal-body M-ring protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 563

 Score =  157 bits (398), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 121/406 (29%), Positives = 197/406 (48%), Gaps = 45/406 (11%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 47  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 106

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 107 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 164

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    P+ASV +     RA++        A+ HLV++AV  L  G+VT++D +G 
Sbjct: 165 PSLFVREQKSPSASVTVTLEPGRALDEG---QISAVVHLVSSAVAGLPPGNVTLVDQSGH 221

Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  
Sbjct: 222 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 281

Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309
           E  Y P+    ++   S+    SE              ++QP    E+ +          
Sbjct: 282 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 341

Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369
           QN P  S           NT ++ E SNYE++     T  +   +ERLS+AVVVN   L 
Sbjct: 342 QNTPQTSTSTNSNNAGPRNT-QRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLA 400

Query: 370 E--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           +   L  +ADQ K      +I  +   A G + +RGDT+ + +  F
Sbjct: 401 DGKPLPLTADQMK------QIEDLTREAMGFSDKRGDTLNVVNSPF 440


>gi|254474533|ref|ZP_05087919.1| flagellar M-ring protein FliF [Ruegeria sp. R11]
 gi|214028776|gb|EEB69611.1| flagellar M-ring protein FliF [Ruegeria sp. R11]
          Length = 558

 Score =  157 bits (397), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 137/447 (30%), Positives = 221/447 (49%), Gaps = 24/447 (5%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           R R++ + + ++V I+  +A     N+P    LY  LE      +  AL +    + +  
Sbjct: 14  RKRLIAVGATVIV-ILSVLAMSRVANTPTMQLLYAGLESGSAGDVVRALDQRGTQYEV-- 70

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
            G SI VP++   + R+ LA++GLP++    GYEL D ++ FG TS M +    RA EGE
Sbjct: 71  RGGSIYVPATERDELRMTLASEGLPANGGR-GYELLDSLSGFGTTSQMFDAAYWRAKEGE 129

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN-PSVYKSAEAIRHLVAA 197
           +ARTI +   +  ARVHI       F++  A PTASV +  +  P   + A AIR LV++
Sbjct: 130 LARTIVASPHVTQARVHIANTGSNPFQRT-AEPTASVSVVPMGSPITPQQANAIRFLVSS 188

Query: 198 AVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDN 257
           AV  L + +V V+D+ G L+ + E        +    QAI+      + + + A +G  N
Sbjct: 189 AVTGLSVDNVAVIDANGALIGSPEAAAAAGAGTDDRSQAIRE----RVMRLVEARVGHGN 244

Query: 258 FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA-VTVEQNMPHVS 316
               V  E   DT+ IRE   DP+S+V  S  +    +R+++SQ +S  VTV  N+P   
Sbjct: 245 AVVEVSVETVTDTESIREKRVDPESRVAISTDVE---ERADSSQNQSGEVTVASNIPD-- 299

Query: 317 DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA 376
                   S  +T    E+ NYEI+            ++RL++AV++N    T   G + 
Sbjct: 300 GDAASGDGSKASTSATRERVNYEISETEKEIIRGPGAIKRLTVAVLLNGVATTNAAGETV 359

Query: 377 DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF--LENQLFNSGTVQVSFMDILSR 434
            + + +  L  + +++SAA G ++ RGD IT+ SM+   +E Q    GTV  S   IL  
Sbjct: 360 MEPRSEEELGALRELISAAVGFSADRGDVITLKSMEMPTIEPQ----GTVVSS--SILDN 413

Query: 435 HFATVINALVFLVGTLLVTFLGLHALR 461
            +   ++ +      L+   LGL  +R
Sbjct: 414 IYLDAMSLIQMAALALVTLILGLFVIR 440


>gi|259908758|ref|YP_002649114.1| flagellar MS-ring protein [Erwinia pyrifoliae Ep1/96]
 gi|224964380|emb|CAX55889.1| Flagellar basal-body M-ring protein [Erwinia pyrifoliae Ep1/96]
 gi|283478734|emb|CAY74650.1| Flagellar M-ring protein FliF [Erwinia pyrifoliae DSM 12163]
          Length = 569

 Score =  157 bits (397), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 143/554 (25%), Positives = 256/554 (46%), Gaps = 70/554 (12%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  L+  L   D   I   L++ N+ ++  D G ++ VP++ V + R+ LA+Q
Sbjct: 46  LWAKQPDYRVLFSNLSNEDGGTIVTQLTQMNVPYKFDDQGGALLVPAAQVHELRLRLASQ 105

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL DK   FG++ F +++   RALEGE+ARTI ++  +  ARVH+ MP 
Sbjct: 106 GLPKGGA-VGFELLDK-EKFGISQFSEQVNYQRALEGELARTISTLGPVKDARVHLAMPK 163

Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
              F +    P+ASV + A+ P          A+ H+V+++V  +  G+VTV+D  G+LL
Sbjct: 164 PTLFVREQKSPSASVTL-ALQPGRALDEGQINAVVHMVSSSVAGMPPGNVTVVDQAGRLL 222

Query: 218 TANEM-ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           T N+   R++    L     ++   +  I   L   LG  N  + V A+++ + ++  + 
Sbjct: 223 TQNDPGGRDLNDTQLKYANDVETRYQQRIEAILGPILGNGNVHAQVTAQIDFNKREKTDE 282

Query: 277 VYDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPHVSDRKVPLP---------- 323
            Y P+S+ ++    S+    SE     SA  V     N P  ++     P          
Sbjct: 283 QYSPNSQPDQQAIRSRQTSNSEQLGGSSAGGVPGALSNQPAPANAAPVTPANNNANNANA 342

Query: 324 ----------------RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367
                           +++ +  + +  +NYE+N   + T  +  +++RLS+AVVVN   
Sbjct: 343 NANNGQPANNAANAAQKTVPSNTRSDNTTNYEVNRTILHTKMNVGEVQRLSVAVVVNY-- 400

Query: 368 LTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG- 422
                 R+   GK     D+ + +I  +   A G + +RGD++ + +  F +N    +  
Sbjct: 401 ------RADAAGKPIALKDAQIKQIENLTREAMGFSEQRGDSLNVVNSQFTDNSDLAAEL 454

Query: 423 --TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
               Q +F+D L   F      LV +V  +L   L    LRR    +  K  E       
Sbjct: 455 PFWKQPAFIDQL---FNAGRWLLVLIVAFILYRKLVSPQLRR--KAEQQKATEEAA---- 505

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
               I++A ++    ++ +A+ S ++D  +  R  Q R+++ V  Q   R+  M E +  
Sbjct: 506 ----INAARSS--TRDEGVAV-SLSKDELNQERKSQHRMSAEVLSQ---RIREMSENDPR 555

Query: 541 RFAKILRKWARSEI 554
             A ++R+W + E+
Sbjct: 556 VVALVIRQWMKDEL 569


>gi|205360167|ref|ZP_02835012.2| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205340693|gb|EDZ27457.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
          Length = 579

 Score =  157 bits (397), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 121/406 (29%), Positives = 197/406 (48%), Gaps = 45/406 (11%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 63  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 122

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 123 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 180

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    P+ASV +     RA++        A+ HLV++AV  L  G+VT++D +G 
Sbjct: 181 PSLFVREQKSPSASVTVTLEPGRALD---EGQISAVVHLVSSAVAGLPPGNVTLVDQSGH 237

Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  
Sbjct: 238 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 297

Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309
           E  Y P+    ++   S+    SE              ++QP    E+ +          
Sbjct: 298 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 357

Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369
           QN P  S           NT ++ E SNYE++     T  +   +ERLS+AVVVN   L 
Sbjct: 358 QNTPQTSTSNNSNNAGPRNT-QRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLA 416

Query: 370 E--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           +   L  +ADQ K      +I  +   A G + +RGDT+ + +  F
Sbjct: 417 DGKPLPLTADQMK------QIEDLTREAMGFSDKRGDTLNVVNSPF 456


>gi|238796932|ref|ZP_04640436.1| Flagellar M-ring protein [Yersinia mollaretii ATCC 43969]
 gi|238719192|gb|EEQ11004.1| Flagellar M-ring protein [Yersinia mollaretii ATCC 43969]
          Length = 563

 Score =  157 bits (397), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 124/464 (26%), Positives = 218/464 (46%), Gaps = 52/464 (11%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           ++L   +   + L +A   +  +P Y  LY  +   D   I   L++ N+ +R  D G +
Sbjct: 29  IVLLICVSAAVTLLIALLLWAKAPDYRVLYSNISDQDGGAIVAQLAQMNVPYRFEDRGGA 88

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP   V +AR+ LA  GLP   S  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 89  IMVPVDKVYEARLKLAQLGLPKGGS-VGFELLDQ-EKFGISQFSEQVNFQRALEGELSRT 146

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I+++  +  ARVH+ +P    F +     +ASV +   N    +S +  AI +L+A+AVP
Sbjct: 147 IETLGPVNGARVHLAIPKPSMFVREQKPSSASVTVNLSNGRSLESGQVSAISYLIASAVP 206

Query: 201 NLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRS 260
            L+  +VT++D  G LLT     + +    L     ++ + +  I   LA  +G +N ++
Sbjct: 207 GLNADNVTIVDQGGHLLT-QRGGQEVQTSQLKFTSEVEADFQQRIQSILAPIVGRNNVKA 265

Query: 261 AVVAELNMDTQQIREIVYDPDSKVER-SIRLSKDAQRSE--------------TSQPESA 305
            V A+L+  T +     + P++  ++ SIR S+ +  SE              ++QP + 
Sbjct: 266 QVTAQLDFTTHEQTAEQFQPNTASDKMSIR-SRQSSDSEQGSKNGVGGVPGALSNQPPTP 324

Query: 306 VTVEQNMP------------------HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
            T     P                    +    P+P +    ++++  +NYE++      
Sbjct: 325 ATAPITQPVGAKEATPTTPTTPGAKGAATTVATPVPFN----NRRDNTTNYELDRTLTHI 380

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
                 +ERLS+AVVVN     E +  +  + ++D    +IN +V  A G +  RGDT+ 
Sbjct: 381 KRSAGSIERLSVAVVVNYLPAKEGVPAALSKAQMD----QINSLVKEAVGFSVERGDTVN 436

Query: 408 ITSMDF--LENQLFNSGTVQVSFMDIL---SRHFATVINALVFL 446
           I +  F  +E ++      Q  F+++L    R+    I A  F 
Sbjct: 437 IVNSLFSDVEEEVAPPFWKQAGFINLLMAAGRYLLVAIVAWFFW 480


>gi|237731986|ref|ZP_04562467.1| flagellar MS-ring protein [Citrobacter sp. 30_2]
 gi|226907525|gb|EEH93443.1| flagellar MS-ring protein [Citrobacter sp. 30_2]
          Length = 557

 Score =  157 bits (397), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 115/402 (28%), Positives = 197/402 (49%), Gaps = 40/402 (9%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ N+ +R ++   +I VP+  V + R+ LA Q
Sbjct: 44  LWAKAPDYRTLFSNLSDQDGGAIVTQLTQMNVPYRFTEGSGAIEVPADKVHELRLRLAQQ 103

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  +  ARVH+ MP 
Sbjct: 104 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKRARVHLAMPK 161

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    P+ASV +     RA++        A+ HLV++AV  L  G+VT++D  G 
Sbjct: 162 PSLFVREQKAPSASVTVNLEPGRALDEG---QISAVTHLVSSAVAGLPPGNVTLVDQAGH 218

Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT +N   R++    L     ++  ++  I   L+  +G  N  + V A+L+   ++  
Sbjct: 219 LLTQSNTSSRDLNDAQLKYASDVEGRVQRRIESILSPIVGNGNVHAQVTAQLDFANKEQT 278

Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQPESAVTVEQNMPHVSDRKV 320
           E  Y P+    +++  S+    SE              ++QP  A T     P  + +  
Sbjct: 279 EEQYRPNGDDSQAVLRSRQLNVSEQIGSGAPGGVPGALSNQPAPANTAPIANPPANQQNA 338

Query: 321 PLPRSLENTD-------KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTE--V 371
              ++  N++       ++ E SNYE++     T  +   ++RLS+AVVVN   L +   
Sbjct: 339 QTTQTANNSNNAGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGKP 398

Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           L  +ADQ K      +I  +   A G + +RGDT+ + +  F
Sbjct: 399 LPLTADQMK------QIEDLTREAMGFSDKRGDTLNVVNSPF 434


>gi|254466479|ref|ZP_05079890.1| flagellar M-ring protein FliF [Rhodobacterales bacterium Y4I]
 gi|206687387|gb|EDZ47869.1| flagellar M-ring protein FliF [Rhodobacterales bacterium Y4I]
          Length = 556

 Score =  157 bits (397), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 142/448 (31%), Positives = 222/448 (49%), Gaps = 26/448 (5%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           R R++ + + +++ I+  +A     + P    LY  LE      +  AL +    + +  
Sbjct: 14  RKRLIAVGATVIM-ILSVIAMSHVASKPSMTLLYAGLESGSAGDVVRALEQRGTQYEV-- 70

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
            GSSI VPS+   + R+ LA++GLP++    GYEL D ++ FG TS M +    RA EGE
Sbjct: 71  RGSSIYVPSTQRDELRMTLASEGLPANGGK-GYELLDSLSGFGTTSQMFDAAYWRAKEGE 129

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN-PSVYKSAEAIRHLVAA 197
           +ARTI +   +  ARVHI    +  F++    PTASV I  +  P     A AIR LV++
Sbjct: 130 LARTIVASPHVSQARVHIANTGLNPFQRT-VEPTASVSIVPMGSPITPAQANAIRFLVSS 188

Query: 198 AVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDN 257
           AV  L + +V V+D+ G L+ +++        +    Q I+      + + + A +G  N
Sbjct: 189 AVTGLAVENVAVIDANGALIGSSDATAAAGAGTDDRSQTIRE----RVMRLVEARVGQGN 244

Query: 258 FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSD 317
               V  E   DT+ IRE + DP S+V  S  + + A  S     E  VTV  N+P    
Sbjct: 245 AVVEVSVETVTDTESIREKLIDPKSRVAVSTDVEERADSSTNQAGE--VTVASNIPD--G 300

Query: 318 RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSAD 377
                  S  NT    E+ NYEI+            ++RL++AV++N   +T   G +  
Sbjct: 301 DAASGQGSKANTSATRERINYEISETEKEILRGPGAIKRLTVAVLINGTAVTNDAGETVF 360

Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF--LENQLFNSGTV-QVSFMDILSR 434
           Q + +  LA + +++SAA G ++ RGD IT+ SM+   +E Q    GTV   SF D L  
Sbjct: 361 QPRPEDELAAMRELISAAVGFDAERGDVITLKSMELPAVEPQ----GTVATASFFDNL-- 414

Query: 435 HFATVINALVFLVGTLLVTF-LGLHALR 461
           +F  +  +LV +    LV+  LGL  +R
Sbjct: 415 YFDAM--SLVQIGALALVSLILGLFVVR 440


>gi|320085412|emb|CBY95193.1| Flagellar M-ring protein [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 560

 Score =  157 bits (397), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 121/406 (29%), Positives = 197/406 (48%), Gaps = 45/406 (11%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 44  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 103

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 104 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 161

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    P+ASV +     RA++        A+ HLV++AV  L  G+VT++D +G 
Sbjct: 162 PSLFVREQKSPSASVTVTLEPGRALDEG---QISAVVHLVSSAVAGLPPGNVTLVDQSGH 218

Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  
Sbjct: 219 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 278

Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309
           E  Y P+    ++   S+    SE              ++QP    E+ +          
Sbjct: 279 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 338

Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369
           QN P  S           NT ++ E SNYE++     T  +   +ERLS+AVVVN   L 
Sbjct: 339 QNTPQTSTSNNSNNAGPRNT-QRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLA 397

Query: 370 E--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           +   L  +ADQ K      +I  +   A G + +RGDT+ + +  F
Sbjct: 398 DGKPLPLTADQMK------QIEDLTREAMGFSDKRGDTLNVVNSPF 437


>gi|78485783|ref|YP_391708.1| flagellar M-ring protein FliF [Thiomicrospira crunogena XCL-2]
 gi|78364069|gb|ABB42034.1| Flagellar M-ring protein FliF [Thiomicrospira crunogena XCL-2]
          Length = 561

 Score =  157 bits (397), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 124/463 (26%), Positives = 226/463 (48%), Gaps = 33/463 (7%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
             K+ TSL   + + L   +   + L +    +  S  Y  L+  ++  D+N +   L +
Sbjct: 22  LLKNLTSLSVAKQVSLVIALAASVALAIGIILWSQSASYTLLFGSMDAKDMNEVIQTLDQ 81

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
            N+ ++I  N  +I VP+  V   R+ LAAQG P  +  +GY++ D    FG++ F +  
Sbjct: 82  ENVPYKIEQNSGAILVPNEQVHSLRLKLAAQGYPKQAP-TGYQILDIDQGFGISQFKETT 140

Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSV 184
              RALEGE+A+++ SI+ + +ARV + MP    F +    PTASV +     RA+N   
Sbjct: 141 RYQRALEGELAKSVSSINAVKSARVMLGMPKRSVFVRKQQEPTASVTVKLYPGRALN--- 197

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIE 242
            +   AI +LV++++PN+    VTV+D  G LLT++      N+  K L   + ++  + 
Sbjct: 198 EEQVSAIVYLVSSSIPNMKPKGVTVVDQQGNLLTSDSHSGIMNVSLKQLGYTRQVEDTLS 257

Query: 243 MNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE--- 298
             I + L    G D+  R+ V AEL+   Q+     Y+PD +  RS +  K+  R+E   
Sbjct: 258 QRIIRLLTPVAGGDHKVRAQVTAELDFTQQEQTRENYEPDPEAIRSEQEIKEINRNEGPM 317

Query: 299 ------TSQPESA-VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
                 T+QP  A +  E+     +D       +L+N+ K+++  NYE++       +  
Sbjct: 318 GIPGALTNQPPRAGIAPEEGYKPEND------PNLKNS-KEKKTKNYELDRTVSHIKNSV 370

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
             + RLS+AVV++     +  G +      +  L    ++VS A G++  RGDT++I + 
Sbjct: 371 GSIRRLSVAVVLDDKLTVDDNGDTVRTPLTEDELQRYRRLVSDAVGLDEARGDTLSIVNA 430

Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTF 454
            F++ +  +    ++         F T++  ++  +  L++ F
Sbjct: 431 SFIQEKQEDFAGPEI----WEEPWFWTLVKQILAGLAVLIIIF 469


>gi|296103558|ref|YP_003613704.1| flagellar MS-ring protein [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295058017|gb|ADF62755.1| flagellar MS-ring protein [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 559

 Score =  157 bits (397), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 144/555 (25%), Positives = 253/555 (45%), Gaps = 79/555 (14%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  SP Y  LY  L   D   I   L++ NI +R +DNG ++ VP+  V + R+ LA Q
Sbjct: 44  LWAKSPDYRTLYSNLSDQDGGAIVTQLTQMNIPYRFADNGGALEVPADKVHELRLRLAQQ 103

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 104 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 161

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    P+ASV +     RA++        A+ HLV++AV  L  G+VT++D +G 
Sbjct: 162 PSLFVREQKSPSASVTVNLEPGRALDEG---QISAVTHLVSSAVAGLPPGNVTLVDQSGH 218

Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT +N   R++    L     ++  ++  I   L   +G  N  + V A+++   ++  
Sbjct: 219 LLTQSNTAGRDLNDAQLKYAADVEARLQRRIEAILGPVVGNSNVHAQVTAQIDFSNKEQT 278

Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQPESAVTVEQNMPHVSDRKV 320
           E  Y P+    +++  S+    +E              ++QP  A     + P  + +  
Sbjct: 279 EEQYRPNGDPAQAVMRSRQVNENEQVGGAYPGGVPGALSNQPAPANAAPISTPPANQQNG 338

Query: 321 PL-------------PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367
                          PR    T+ + E +NYE++     T  +   ++RLS+AVVVN   
Sbjct: 339 QQNQQTTTSTASNAGPR----TNSRNETTNYEVDRTIRHTKLNVGDIQRLSVAVVVNYKT 394

Query: 368 LT--EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG--- 422
           L   + L  +A+Q      + +I  +   A G + +RGD++ + +  F  N +  +G   
Sbjct: 395 LPNGKPLPLTAEQ------MKQIEDLTREAMGYSEKRGDSLNVVNSPF--NPVDETGGEL 446

Query: 423 --TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
               Q +F+D L    +     LV +V  LL        L+R    + A + ++  +   
Sbjct: 447 PFWQQQAFIDQL---MSAGRWLLVLIVAWLLWRKGVRPQLQRRAEAEKAAREQINARQ-- 501

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
               +  AV   L  ++ +    +NQ           R+ + V  Q   R+  M + +  
Sbjct: 502 ---EVEEAVEVRLSKDEQMQQRRANQ-----------RMGAEVMSQ---RIREMSDNDPR 544

Query: 541 RFAKILRKWARSEIE 555
             A ++R+W  +E E
Sbjct: 545 VVALVIRQWMGNEHE 559


>gi|308273184|emb|CBX29787.1| hypothetical protein N47_F14820 [uncultured Desulfobacterium sp.]
          Length = 520

 Score =  157 bits (396), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 134/465 (28%), Positives = 221/465 (47%), Gaps = 30/465 (6%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           D  +QF     SL   + + ++  +L+ I  F       N   Y  L+  L   D   I 
Sbjct: 3   DSAVQFLNFIKSLPLAKKITISVTVLLLIAAFAVMFMLSNQVDYRVLFNNLSAQDAGAII 62

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L E NI ++I   GS I VPS  V + R+ +   GLP      G+E+FDK + +  T 
Sbjct: 63  EKLKEKNIPYKIEGGGSLILVPSDQVYELRLKMVGDGLPRDGQ-IGFEIFDKTD-YKTTQ 120

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           F+Q +   RAL+GE+ARTI     + ++R+ IV+P    F +     +ASV++   +   
Sbjct: 121 FVQSLNYQRALQGELARTINCFDEVKSSRIFIVLPKETLFAEDTKPASASVLLDLKSNLP 180

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL----TANEMERNILGKSLSIVQAIQHE 240
            +   AI HLVA+AV  L+  +VTV+D+ G+++      N+    +    L     I+ E
Sbjct: 181 PERLSAIVHLVASAVEGLEPEEVTVVDTKGRVIFKGGNGNQTNTFLNNSQLDYKSKIESE 240

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           I  N+   L   +G  N    V A+++ +   + E  YDP + V RS R  +++ R+  +
Sbjct: 241 ISRNVQSMLEGIIGSGNAIVRVTADIDFNKTSMNEEEYDPAAAVVRSKRDIEESFRAGNA 300

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ-SNYEINTKSIATTHDNYKLERLSI 359
             ESA ++      V    +P     +N  +K++  +NYEIN  +   +     ++RLS+
Sbjct: 301 SSESAPSLINQRAGV----IPAESVDQNGKRKKDTLTNYEINKVTRVISKPAGTIKRLSV 356

Query: 360 AVVVNKGRLTEVLGRSADQ-------GKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
           A V++ GR   V  +SAD         + D  L +   IV  A G N  R D I+++S+ 
Sbjct: 357 AAVID-GRYETV--KSADGTDKRNYIPRTDEELKKFEDIVKGAMGYNEDREDKISVSSIP 413

Query: 413 FLENQLFNSGTVQVS-----FMDILSRHFATVINALVFLVGTLLV 452
           F E+     G +Q++     FM +L  +  ++IN    L+    V
Sbjct: 414 FSESL---PGDIQMASEPFDFMALLKDYKNSLIN-FCLLIAVFFV 454


>gi|308187290|ref|YP_003931421.1| Flagellar M-ring protein [Pantoea vagans C9-1]
 gi|308057800|gb|ADO09972.1| Flagellar M-ring protein [Pantoea vagans C9-1]
          Length = 575

 Score =  157 bits (396), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 135/468 (28%), Positives = 215/468 (45%), Gaps = 63/468 (13%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  LY  L   D   I   L++ NI +R ++NG ++ VP + V + R+ LA Q
Sbjct: 47  LWAKQPSYSVLYNNLTDEDGGAIVTQLTQMNIPYRFAENGGALIVPEANVHELRLRLAQQ 106

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   S  G+EL DK   FG++ F +++   RALEGE+ARTI+S+  + +ARVH+ MP 
Sbjct: 107 GLPKGGS-VGFELLDK-EKFGISQFSEQVNYQRALEGELARTIESLGPVKSARVHLAMPK 164

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    P+ASV +     RA++       +AI H+V+++V  L  G+VTV+D TG+
Sbjct: 165 PTLFVREQKAPSASVTLTLQPGRALDEG---QIQAIAHMVSSSVAGLPPGNVTVVDQTGR 221

Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT ++   R++    L     ++   +  I   L   LG  N  + V A++N DT +  
Sbjct: 222 LLTRSDNAGRDLNDAQLKYSSEVEARYQQRIEAILNPILGQGNVHAQVTAQINFDTSEQT 281

Query: 275 EIVYDPDSKVERSIRLSKDAQRSETS--------------QPESAVTVEQNMP------- 313
           +  Y P++    +   S+    S+ S              QP  A T     P       
Sbjct: 282 DEKYQPNANPSNTAIRSRQTSTSDQSGSPYPGGVPGALSNQPAPANTAPVTTPNNNAANG 341

Query: 314 ------------HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIA 360
                                  S     ++++  NYE++ +SI  T  N   ++RLS+A
Sbjct: 342 QNANGQNNAANNASQTTSTAAASSAPTNSRRDDTVNYELD-RSIRHTKVNVGDVQRLSVA 400

Query: 361 VVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           VVVN         R+ D+GK     +  L +I  +   A G +  RGD++ + +  F   
Sbjct: 401 VVVN--------FRADDKGKAVALNEQQLKQIEDLTREAMGYSQTRGDSVNVVNSQFNTT 452

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
           +     T  + F    S  F  ++NA  +L+   LV F+    L R H
Sbjct: 453 EAV---TADLPFWQQQS-FFDQLMNAGKWLL-IALVAFILYRKLVRPH 495


>gi|193222343|emb|CAL62027.2| Flagellar M-ring protein [Herminiimonas arsenicoxydans]
          Length = 562

 Score =  157 bits (396), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 127/438 (28%), Positives = 208/438 (47%), Gaps = 56/438 (12%)

Query: 18  GRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS 77
           GR  +L++    ++ +M+ +    +   P Y  L+      D   I  +L  AN+ ++ +
Sbjct: 24  GRKFLLMVGVAAVIAVMIGLV--LWGQKPEYRVLFSNFSDRDGGAIMTSLQAANVPYKFA 81

Query: 78  DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137
           + G +I VP+  V + R+ LAA+GLP   S  G+EL +     G++ F++++   RALEG
Sbjct: 82  EGGGAILVPADKVHEIRLKLAAEGLPKGGS-VGFELMEN-QKLGVSQFLEQVNFQRALEG 139

Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIR 192
           E+AR+IQS+  + AARVH+ +P    F +   +PTASV++     R ++    +   AI 
Sbjct: 140 ELARSIQSVGAVQAARVHLALPKASVFVRDQQKPTASVLLNLHAGRFLD---QQQVSAIV 196

Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKS-LSIVQAIQHEIEMNINKAL 249
           HLVA++VP L   +VT++D  G LL+ N      N L  S L  VQ +Q  I   I   +
Sbjct: 197 HLVASSVPELSPKNVTIVDQAGNLLSENNKPAGTNTLDPSQLKYVQELQQNIAKRIESII 256

Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPD----SKVERSIRLSKDAQRSE------- 298
              +G++N R+   A+++  T +    +Y P+    S   RS + S+    S        
Sbjct: 257 TPIVGLNNVRAEATADVDFSTSEQAAEIYKPNQVPSSATVRSQQTSESTNGSNNATGVPG 316

Query: 299 --TSQPESAVTVEQN-MPHVSDRKVPLPRSLENTD-------------KKEEQSNYEINT 342
             T+QP  A T   N  P  +                           +++  +NYE++ 
Sbjct: 317 ALTNQPAPAATAPLNTTPQTTAAPGTPGAPGTPGAPAATATAPQATPIQRDTTTNYEVDK 376

Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLA-------EINKIVSAA 395
                      L+RLS+AVVVN  R   V+G+    GK+ S+L        +I  +V  A
Sbjct: 377 TIRYVQQPMGGLKRLSVAVVVNYKR---VVGKD---GKV-SFLPLTEIEKTQITDLVREA 429

Query: 396 TGINSRRGDTITITSMDF 413
            G N  RGDT+ + +  F
Sbjct: 430 MGYNKDRGDTLNVVNSPF 447


>gi|134095076|ref|YP_001100151.1| flagellar MS-ring protein [Herminiimonas arsenicoxydans]
          Length = 545

 Score =  157 bits (396), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 127/438 (28%), Positives = 208/438 (47%), Gaps = 56/438 (12%)

Query: 18  GRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS 77
           GR  +L++    ++ +M+ +    +   P Y  L+      D   I  +L  AN+ ++ +
Sbjct: 7   GRKFLLMVGVAAVIAVMIGLV--LWGQKPEYRVLFSNFSDRDGGAIMTSLQAANVPYKFA 64

Query: 78  DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137
           + G +I VP+  V + R+ LAA+GLP   S  G+EL +     G++ F++++   RALEG
Sbjct: 65  EGGGAILVPADKVHEIRLKLAAEGLPKGGS-VGFELMEN-QKLGVSQFLEQVNFQRALEG 122

Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIR 192
           E+AR+IQS+  + AARVH+ +P    F +   +PTASV++     R ++    +   AI 
Sbjct: 123 ELARSIQSVGAVQAARVHLALPKASVFVRDQQKPTASVLLNLHAGRFLD---QQQVSAIV 179

Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKS-LSIVQAIQHEIEMNINKAL 249
           HLVA++VP L   +VT++D  G LL+ N      N L  S L  VQ +Q  I   I   +
Sbjct: 180 HLVASSVPELSPKNVTIVDQAGNLLSENNKPAGTNTLDPSQLKYVQELQQNIAKRIESII 239

Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPD----SKVERSIRLSKDAQRSE------- 298
              +G++N R+   A+++  T +    +Y P+    S   RS + S+    S        
Sbjct: 240 TPIVGLNNVRAEATADVDFSTSEQAAEIYKPNQVPSSATVRSQQTSESTNGSNNATGVPG 299

Query: 299 --TSQPESAVTVEQN-MPHVSDRKVPLPRSLENTD-------------KKEEQSNYEINT 342
             T+QP  A T   N  P  +                           +++  +NYE++ 
Sbjct: 300 ALTNQPAPAATAPLNTTPQTTAAPGTPGAPGTPGAPAATATAPQATPIQRDTTTNYEVDK 359

Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLA-------EINKIVSAA 395
                      L+RLS+AVVVN  R   V+G+    GK+ S+L        +I  +V  A
Sbjct: 360 TIRYVQQPMGGLKRLSVAVVVNYKR---VVGKD---GKV-SFLPLTEIEKTQITDLVREA 412

Query: 396 TGINSRRGDTITITSMDF 413
            G N  RGDT+ + +  F
Sbjct: 413 MGYNKDRGDTLNVVNSPF 430


>gi|325295413|ref|YP_004281927.1| flagellar M-ring protein FliF [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065861|gb|ADY73868.1| flagellar M-ring protein FliF [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 529

 Score =  156 bits (395), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 130/432 (30%), Positives = 209/432 (48%), Gaps = 46/432 (10%)

Query: 22  ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81
           IL+L+++ LV  + F+A +       Y  LY  L   D   I   L E +I +++  NGS
Sbjct: 24  ILLLSALTLVSFLAFIAIKQSTTE-DYAVLYTHLSPDDAGSILSVLQEEHIPYKVEGNGS 82

Query: 82  SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
            I VP   V   R+ LAA+GLP      G+ELFD+    G+T F + +  +RALEGEI R
Sbjct: 83  IILVPKEKVYDIRLKLAAKGLPHGKV-VGFELFDE-PKLGITQFQENVEFLRALEGEIER 140

Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS---VYKSAEAIRHLVAAA 198
           TI+ I+ I   +V+I +P    F +    P AS+++  + P      +  +AI  LV+ A
Sbjct: 141 TIKRINAIQDVKVNIALPKDSIFVRESEEPKASILVN-LWPGRELTKEQVKAIVFLVSHA 199

Query: 199 VPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLG 254
           VP L   +VTV+D+ G++LT     NE E     K L + + ++ EIE  I   L+  LG
Sbjct: 200 VPGLKPENVTVIDNRGRVLTDLLSGNEDETG-SSKELEVKRKLEKEIERKIQSMLSQVLG 258

Query: 255 VDNFRSAVVAELNMDTQQIREIVYDPDSKV---ERSIRLSKDAQRSETS-QPESAVTVEQ 310
                     E+     + +E +YDPD      ER I      Q  ET  +P+     EQ
Sbjct: 259 SGKVVVRASVEIETGRLEKKEELYDPDMTAVVSERKI------QEKETGIKPK-----EQ 307

Query: 311 NMPHVSDRKVPL-----PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365
            +P  +    P+        +   +KK+  +NY+++     T    +K++R+S+ V+V+ 
Sbjct: 308 GVPGTTTNVPPVLNLNQGNEILKKEKKDVTTNYDVSKTIQKTITPIFKIKRISVGVLVD- 366

Query: 366 GRLTEVLGRSAD---------QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           G+  +   ++ +         Q +I +Y     +IV +A G + +RGDT+T+ S+ F   
Sbjct: 367 GKYQKEKDKAGNEIIKFVPRSQEEIKTY----EEIVKSAIGYDPKRGDTVTVASVPFEAK 422

Query: 417 QLFNSGTVQVSF 428
           Q       Q  F
Sbjct: 423 QFVQKEKSQKKF 434


>gi|288549808|ref|ZP_05968261.2| flagellar M-ring protein FliF [Enterobacter cancerogenus ATCC
           35316]
 gi|288317495|gb|EFC56433.1| flagellar M-ring protein FliF [Enterobacter cancerogenus ATCC
           35316]
          Length = 543

 Score =  156 bits (395), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 117/408 (28%), Positives = 194/408 (47%), Gaps = 50/408 (12%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  SP Y  LY  L   D   I   L++ NI +R +DNG ++ VP+  V + R+ LA Q
Sbjct: 28  LWAKSPDYRTLYSNLSDQDGGAIVTQLTQMNIPYRFADNGGALEVPADKVHELRLRLAQQ 87

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 88  GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 145

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    P+ASV +     RA++        A+ HLV++AV  L  G+VT++D +G 
Sbjct: 146 PSLFVREQKSPSASVTVNLEPGRALDEG---QISAVTHLVSSAVAGLPPGNVTLVDQSGH 202

Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT +N   R++    L     ++  ++  I   L   +G  N  + V A+++   ++  
Sbjct: 203 LLTQSNSAGRDLNDAQLKYAADVEGRLQRRIEAILGPVVGSSNVHAQVTAQIDFANKEQT 262

Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQPESAVTVEQNMPH------ 314
           E  Y P+    +++  S+    +E              ++QP  A       P       
Sbjct: 263 EEQYSPNGNPSQAVMRSRQVNENEQVGGPYPGGVPGALSNQPAPANAAPITTPAANQQNG 322

Query: 315 -------VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367
                   S      PR    T  + E +NYE++     T  +   ++RLS+AVVVN   
Sbjct: 323 QQNNAQTTSTAASSGPR----TSSRNETTNYEVDRTIRHTKLNVGDVQRLSVAVVVNYKT 378

Query: 368 LTE--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           L +   L  + +Q K      +I  +   A G + +RGDT+ + +  F
Sbjct: 379 LPDGKPLPLTTEQMK------QIEDLTREAMGYSEKRGDTLNVVNSPF 420


>gi|77918796|ref|YP_356611.1| flagellar M-ring protein FliF [Pelobacter carbinolicus DSM 2380]
 gi|77544879|gb|ABA88441.1| flagellar M-ring protein FliF [Pelobacter carbinolicus DSM 2380]
          Length = 519

 Score =  156 bits (395), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 134/451 (29%), Positives = 215/451 (47%), Gaps = 30/451 (6%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           R R L L +V+L  ++ F A  F  N   Y  L+  L+ +D   +   L E  + +R+  
Sbjct: 19  RKRQLSLLAVVLACVVFFAAIIFQANKADYQMLFGNLDSADAAAVVDRLKEQKVPYRLEH 78

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
            G +I +P+  V + R+ +A  GLP      G+E+FDK  SFG+T F Q+I  +RAL+GE
Sbjct: 79  GGRAIFIPADKVYEIRLAMAGSGLPRGG-GVGFEIFDK-QSFGMTDFAQKINYLRALQGE 136

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVA 196
           ++RTI S++ + AARVH+ +P+   FR    + +ASV+++       +  +   I +LVA
Sbjct: 137 LSRTIASLAPVEAARVHLALPEKRLFRDQQQKASASVIVKLATGQSLRETQILGIVNLVA 196

Query: 197 AAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS---LSIVQAIQHEIEMNINKALAAFL 253
            +V  LD+  V V+D  G++L+         G +   L   Q ++  +E+     L   L
Sbjct: 197 GSVDGLDVDQVAVIDDNGRVLSQTADHSGTGGTAPDMLEYQQNLEQRLELRAQALLDRAL 256

Query: 254 GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP 313
           G+ N    V A ++   ++  E  YDP+    RS + S     SE     +A  V     
Sbjct: 257 GMGNSMVQVTAAIDYTQRERMEESYDPNQTAVRSEQSS-----SEKGGVANAGGVPGVQT 311

Query: 314 HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGRLTEVL 372
           ++ + K     S   T +  E  NYEI +K ++   D+   ++ LS+AV+V        +
Sbjct: 312 NIKNEKA--GNSFIPTSRSNETINYEI-SKVVSKQVDSVGSIKNLSVAVLV----ADRPV 364

Query: 373 GRSADQGKIDSY-------LAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT-V 424
               D  K  SY       LA I K++S A G+N  RGD I + S  F     FNS   V
Sbjct: 365 DNQGDTDKAPSYQPRDPKELAAIEKMISRALGLNPDRGDQIAVISRPF--ETAFNSEPLV 422

Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFL 455
           + S    + +    +  AL+ L   L   F+
Sbjct: 423 KSSPWSRIYQMVPMIKYALLALTAGLFYFFV 453


>gi|291278937|ref|YP_003495772.1| flagellar M-ring protein FliF [Deferribacter desulfuricans SSM1]
 gi|290753639|dbj|BAI80016.1| flagellar M-ring protein FliF [Deferribacter desulfuricans SSM1]
          Length = 556

 Score =  156 bits (395), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 136/494 (27%), Positives = 245/494 (49%), Gaps = 42/494 (8%)

Query: 1   MAILDQLLQF---FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEV 57
           MA+ D + QF   F S + + +  I+     + + I++ +    + N P Y  LY  L  
Sbjct: 1   MALKDFINQFKAVFNSLSLIQKVSIVTATVAVFLTIIVLV---IWANKPVYKTLYSNLSS 57

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
            D  +I   L    I + + DNG +I VP   V + R++LA +GLPS    +G+ELFDK 
Sbjct: 58  DDAAKIVEELKANKIPYELKDNGKTILVPEKNVYELRLNLAQKGLPSGGG-AGFELFDK- 115

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
           +SFG++ F Q +   RAL+GE+ARTI+S+  +  ARVH+ +P    F    + P A+V++
Sbjct: 116 SSFGISEFAQNVNYQRALQGELARTIKSLDEVEDARVHLTLPKERIFVSEESSPKATVVL 175

Query: 178 RAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKS-L 231
           +  N +    ++ +AI  LVA AV  L + +V V+D+ G+LL+   + + E  +L ++ L
Sbjct: 176 KFRNGANISRENIKAIASLVAGAVKGLTIDNVQVVDTKGRLLSEFLSKDYEPLLLTQTQL 235

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
              + I+  +E  IN  L+  LG DN  + V A+++   + + +  YDP+  V RS +  
Sbjct: 236 EYQKHIEKNLESKINSILSRVLGPDNAVAKVTADIDFTKKVVSKEEYDPNP-VLRSQQTV 294

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIA 346
           +   ++  + P     V  N+          P ++ N       K E   N+E+      
Sbjct: 295 EIESKNTPNAPGGTPGVSSNLAE--------PNNINNGSNSEYSKAETTQNFEVGKTVTK 346

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKI---VSAATGINSRRG 403
                  ++++++AV++N  ++ +  G+ +    +     EI KI   V +A GI+  RG
Sbjct: 347 EEKPIGVVKKITVAVLLNDKKVVKEEGKKSKIEYVKWTPEEIEKIKKLVESAAGIDVNRG 406

Query: 404 DTITITSMDF-----LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           D I +T++ F     LE   F +   ++S +  ++++       L  L+  L    +   
Sbjct: 407 DRIEVTNISFDTTHDLEVASFYNKQEKMSLIFTIAKY------VLALLIVVLFYFLVVRP 460

Query: 459 ALRRLHNIDDAKKG 472
            L+RL  + + ++G
Sbjct: 461 ILKRLETVRETEEG 474


>gi|161511085|ref|NP_773639.2| flagellar MS-ring protein [Bradyrhizobium japonicum USDA 110]
          Length = 537

 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 120/411 (29%), Positives = 204/411 (49%), Gaps = 13/411 (3%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           Q L  F  G    R   +I  +  LV    F+  R  V +P    L+  L V D + I  
Sbjct: 2   QGLADFLKGIGAARFGAMIAVTAALVGFFAFVIMR--VTTPQMTTLFTDLSVEDSSSIIK 59

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L    I F + + G+ I VP   V + R+ LA +G        GYE+FDK ++ G TSF
Sbjct: 60  DLERQAIQFELRNEGTIIMVPKDKVTRLRMKLA-EGGLPKGGGVGYEVFDKSDALGTTSF 118

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
           +Q I  +RALEGE+ARTI++I  I AARVH+V+P+   F +    P+AS+++R       
Sbjct: 119 VQNINHLRALEGELARTIRAIDRIQAARVHLVLPERPLFSREAPEPSASIVVRVRGALEA 178

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQAIQHEIE 242
           +   AIRHLVA+AV  L    V+++D  G+LL    A + E+ +  +  +     +  + 
Sbjct: 179 QQIRAIRHLVASAVNGLKPQRVSIVDEAGQLLADGAATDPEQALGDERRT---TFEKRMR 235

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
             +   +++ +G    R  + A+ + +        +DP+ +V RS +  +++  S T+  
Sbjct: 236 KQVEDIVSSVVGSGRARVQLSADFDFNKITQTSDKFDPEGRVLRSTQTREES--SMTADN 293

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
              VTV   +P   +++     + + + K EE +NYEI+  +     +  ++ R+S+AV+
Sbjct: 294 NGQVTVNNELP--GNQQNNGVAAKDQSKKTEETNNYEISRTTKTEVTEAGRVNRISVAVL 351

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           V+        G  A Q +    L  I  +V +A G + +RGD + + ++ F
Sbjct: 352 VDGIYSKNDKGELAYQDRTKEQLDRIATLVRSAIGFDQKRGDQVEVVNLRF 402


>gi|157371187|ref|YP_001479176.1| flagellar MS-ring protein [Serratia proteamaculans 568]
 gi|157322951|gb|ABV42048.1| flagellar M-ring protein FliF [Serratia proteamaculans 568]
          Length = 563

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 117/410 (28%), Positives = 204/410 (49%), Gaps = 40/410 (9%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  SP Y  LY  +   D   I   L++ NI FR ++NG+++ +P+  V + R+ LA  
Sbjct: 46  LWAKSPDYRVLYSNINDRDGGAIVTQLTQMNIPFRFAENGAALLIPADKVHETRLRLAQL 105

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F ++I   RALEGE++RTI+S+  +  ARVH+ +P 
Sbjct: 106 GLPKGGA-VGFELLDQ-EKFGISQFSEQINYQRALEGELSRTIESLGPVQNARVHLALPK 163

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    P+ASV +     RA++        AI ++V+++V  L  G+VTV+D +G+
Sbjct: 164 PSLFVREQKSPSASVTLTLQPGRALDDG---QINAIVYMVSSSVAGLPPGNVTVVDQSGR 220

Query: 216 LLTANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT ++   R++    L     ++   +  I   LA  +G  N R+ V A+++  T++  
Sbjct: 221 LLTQSDGAGRDLNAAQLKYANEVESRYQRRIEAILAPMVGNGNARAQVTAQIDFATREQT 280

Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQPESAVT--VEQNMPHVSDR 318
           +  Y P+    ++   SK   +S+              ++QP +  T  +E   P  +  
Sbjct: 281 DEEYQPNQLPNKAAVRSKQMSQSDQIGGPLVGGVPGALSNQPSAPATAPIETAKPAATGN 340

Query: 319 KVPLPR----------SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368
                +          S     + +E +NYE++     T      ++RLS+AVVVN  R 
Sbjct: 341 NANATQPNAAATRSAASGPQNSRLDETTNYEVDRTIRHTQQKAGTVQRLSVAVVVNY-RG 399

Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           T+  G+     K    LA+I  +V  + G +S RGDT+ + +  F +N++
Sbjct: 400 TDKDGKPLPMSK--EQLAQIESLVRESMGFSSTRGDTLNVVNTPFTDNEV 447


>gi|207728374|ref|YP_002256768.1| flagellar m-ring protein [Ralstonia solanacearum MolK2]
 gi|206591620|emb|CAQ57232.1| flagellar m-ring protein [Ralstonia solanacearum MolK2]
          Length = 614

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 137/470 (29%), Positives = 228/470 (48%), Gaps = 80/470 (17%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  LY  +  SD   I  AL + N+ +R +D  S+I VP + V + R+ LAAQ
Sbjct: 66  LWSRAPDYRVLYSNVADSDGGAIIAALQQMNVPYRFADGDSAIMVPEANVHEVRLKLAAQ 125

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP     +G+EL +    FG + F +++   RALEGE+ARTIQ++  + +ARVH+ +  
Sbjct: 126 GLPKGGL-AGFELMEN-QKFGTSQFAEQVNYQRALEGELARTIQAMQEVQSARVHLALSK 183

Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
              F +  A+P+ASV+++ + P         +AI HLV+++VPNL + +VTV+D +G+LL
Sbjct: 184 PSVFVREQAKPSASVLLK-LYPGRMLDRSQVQAIGHLVSSSVPNLPLANVTVVDQSGRLL 242

Query: 218 TANEMERNILG---KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQI 273
           +++  + N  G     L+ V+ I+      I   L   +G DN R+ V A++++D T+Q+
Sbjct: 243 SSS-FQDNASGLDPTQLNYVRDIEQGYIKRIEAILGPVVGDDNVRAQVTADVDLDNTEQM 301

Query: 274 REIV---YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVP--------- 321
            E      DP + V RS   S+  Q    +Q         N P  + R +P         
Sbjct: 302 AETYRPNQDPANGVVRSTHTSESTQNKAGAQ-GGVPGALSNQPPTAPRMLPTAPAPASQQ 360

Query: 322 ---------------------------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
                                         S+E++  ++   NYE++     T      +
Sbjct: 361 AAAGQNGQNGQNAPNGQQQAAAAAGQAATNSVESS-ARDTTVNYEVDKTVRRTRAAVGTV 419

Query: 355 ERLSIAVVVN---KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
            RLS+AVVVN    G+  + L         D+ + ++N +V  A G +++RGD++ + + 
Sbjct: 420 RRLSVAVVVNYRADGKTWKPLS--------DADMVKLNALVKDAVGYDAKRGDSVNVVNS 471

Query: 412 DFLENQLFNSGTVQVSFMDI-LSR-----HFATVINALVFLVGTLLVTFL 455
            F       SGT+ +S  D+ L +     H+A  I A  +  G L + FL
Sbjct: 472 QF-------SGTLPMSRDDLPLWKQPEMIHYA--IQAAKY--GALAIGFL 510


>gi|260868531|ref|YP_003234933.1| flagellar basal-body MS-ring and collar protein FliF [Escherichia
           coli O111:H- str. 11128]
 gi|257764887|dbj|BAI36382.1| flagellar basal-body MS-ring and collar protein FliF [Escherichia
           coli O111:H- str. 11128]
 gi|323180809|gb|EFZ66349.1| flagellar M-ring protein FliF [Escherichia coli 1180]
          Length = 552

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 200/418 (47%), Gaps = 40/418 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R+S+   +
Sbjct: 25  LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRVSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFREQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+    ++   S+    SE S    P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPD--------GKPVPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429


>gi|319764515|ref|YP_004128452.1| flagellar m-ring protein flif [Alicycliphilus denitrificans BC]
 gi|330826731|ref|YP_004390034.1| flagellar M-ring protein FliF [Alicycliphilus denitrificans K601]
 gi|317119076|gb|ADV01565.1| flagellar M-ring protein FliF [Alicycliphilus denitrificans BC]
 gi|329312103|gb|AEB86518.1| flagellar M-ring protein FliF [Alicycliphilus denitrificans K601]
          Length = 564

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 112/397 (28%), Positives = 195/397 (49%), Gaps = 26/397 (6%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           F+   P Y  L+  L   D   I   L++ N+ ++ ++ G +I VP+  V   R+ LA Q
Sbjct: 50  FYGRQPEYRVLFSGLNDKDGGAIVAQLAQMNVPYKYTEGGGAIMVPAERVHDVRLRLATQ 109

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP  S  +G+EL +  N FG+T F + +   R LEGE+ R+IQ+++ + +ARVH+ +P+
Sbjct: 110 GLPKGSV-TGFELME-TNRFGVTQFQERLNFQRGLEGELTRSIQALASVQSARVHLALPN 167

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +   +P+ASV++      +    +   I HLVA++VP L    V+VLD TGKLL+
Sbjct: 168 QNGFFREQQKPSASVLLTLYPGRILDRTQIAGIVHLVASSVPELAPSAVSVLDDTGKLLS 227

Query: 219 ANE---MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM----DTQ 271
            +        +  + L+ VQ I+ +    I   L   +G +N ++ V AE++      T 
Sbjct: 228 QSPDGGAGSGVDAQQLAYVQQIEQQYTRRILDLLEPVVGKNNVKAQVTAEVDFSQTESTS 287

Query: 272 QIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV--TVEQNMPHVSDRKV----PLP-- 323
           +       PD+   RS ++ +    +  +QP + V   V    P  S   +    P P  
Sbjct: 288 EQHRPNLSPDASAVRSQQIVESGA-APAAQPPTGVPGAVSNQPPQGSTAPINGANPPPTA 346

Query: 324 -----RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA-D 377
                   +   K+E  +NYE++  +  T      ++R++ AVVVN   ++E  G+ A +
Sbjct: 347 ANAQQAGQQAGGKRESITNYEVDKTTRVTRAGAGAIKRVNAAVVVNYQSVSEAPGKPAVN 406

Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           +      + ++  +V    G N  RGD++ + +  FL
Sbjct: 407 KALSPEQIEQMTALVRETIGFNKERGDSVNLMNAPFL 443


>gi|291613068|ref|YP_003523225.1| flagellar M-ring protein FliF [Sideroxydans lithotrophicus ES-1]
 gi|291583180|gb|ADE10838.1| flagellar M-ring protein FliF [Sideroxydans lithotrophicus ES-1]
          Length = 546

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 115/407 (28%), Positives = 203/407 (49%), Gaps = 40/407 (9%)

Query: 35  LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKAR 94
           LFM    +  +P Y  LY  +   D   +  +L + NI ++ ++ G+ + VP+  V + R
Sbjct: 41  LFM----WGQTPDYRVLYANMSERDGGAVIESLQQQNIPYKFTEGGT-LMVPADRVYEVR 95

Query: 95  IHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARV 154
           + +AA+GLP   +  G+EL +    FG + F++++   RALEGE++R++++I+ + +ARV
Sbjct: 96  LQMAAKGLPKGGT-VGFELMEN-QKFGTSQFLEQVNYQRALEGELSRSVETIASVASARV 153

Query: 155 HIVMPDMGSFRKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDS 212
           H+ +P    F K   +P+ASV+  +RA N        AI HL++++VPN++  +VTV+D 
Sbjct: 154 HLAIPKQSVFVKEQQKPSASVILSLRAGNSLDEGQVSAIVHLISSSVPNMNAQNVTVVDQ 213

Query: 213 TGKLLTA---NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM- 268
           +G LL++   +  E+ +    L  V+ I+ +    I   L    GV N R+ V A L+  
Sbjct: 214 SGTLLSSARDSNAEQLMDATQLKYVRQIEQDYVKRIEDILIPITGVQNVRAQVTASLDFS 273

Query: 269 DTQQIREIV---YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRS 325
            T+Q  E       P+    RS+         +T + ++  T    +P     + P+P +
Sbjct: 274 QTEQTAETFRPNQPPNQAAVRSL---------QTLETQNGTTSTGGVPGALSNQPPVPAT 324

Query: 326 ---------------LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTE 370
                                KE  +NYE++     T      ++RLSIAVVVN    T 
Sbjct: 325 APIVTPASAVVAAAGTAGNMHKELTTNYEVDRTIQHTKLPVGSIKRLSIAVVVNNPSTTG 384

Query: 371 VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
             G++  +   D+  A+I  +V    G +++RGD++ + +  F E Q
Sbjct: 385 KDGKATSRPYTDAEKAQITALVKETVGFDAKRGDSLNLLNSAFNEQQ 431


>gi|170769442|ref|ZP_02903895.1| flagellar M-ring protein FliF [Escherichia albertii TW07627]
 gi|170121766|gb|EDS90697.1| flagellar M-ring protein FliF [Escherichia albertii TW07627]
          Length = 552

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 113/397 (28%), Positives = 193/397 (48%), Gaps = 32/397 (8%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R+S+   +I VP+  V + R+ LA Q
Sbjct: 41  LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRVSETSGAIEVPADKVHELRLRLAQQ 100

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE++RTI++I  +  ARVH+ +P 
Sbjct: 101 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLALPK 158

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +  +        +  AI HLV++AV  L  G++T++D  G LLT
Sbjct: 159 PSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAGLPTGNITLVDQGGHLLT 218

Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            +N  ER++    L     ++  I+  I   L   +G  N  + V A+L+  +++  E  
Sbjct: 219 QSNSSERDLNDIQLKYANDVESRIQQRIEAILTPIVGNGNIHAQVTAQLDFASKEQTEEQ 278

Query: 278 YDPDSKVERSIRLSKDAQRSETS---QPESAVTVEQNMP-HVSDRKVPLPRSLENTDKKE 333
           Y P+    ++   S+    SE S    P        N P   ++  +  P + +N  +++
Sbjct: 279 YRPNGNESQTALRSRQLNESEQSGSGYPGGVPGALSNQPAPANNAPISTPPTTQNNRQQQ 338

Query: 334 ---------------EQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTE--VLGRSA 376
                          E SNYE++     T  +   ++RLS+AVVVN   L +   L  S 
Sbjct: 339 TSTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNDKTLPDGKPLPLST 398

Query: 377 DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           +Q      + +I  +   A G + +RGD++ + +  F
Sbjct: 399 EQ------MKQIEDLTREAMGFSEKRGDSLNVVNSPF 429


>gi|293410294|ref|ZP_06653870.1| flagellar M-ring protein FliF [Escherichia coli B354]
 gi|291470762|gb|EFF13246.1| flagellar M-ring protein FliF [Escherichia coli B354]
          Length = 552

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 117/418 (27%), Positives = 202/418 (48%), Gaps = 40/418 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIIAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQRSETSQPESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+     +   S+   ++++S +S P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSSYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429


>gi|1772459|dbj|BAA14029.1| FliF [Escherichia coli W3110]
          Length = 552

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 119/418 (28%), Positives = 198/418 (47%), Gaps = 40/418 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT +N   R++    L     ++  I+  I   L+  +G  N R
Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIR 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A L+  +++  E  Y P+     +   S+    SE S    P        N P  +
Sbjct: 261 AQVTAHLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429


>gi|162136034|ref|YP_530830.2| flagellar MS-ring protein [Rhodopseudomonas palustris BisB18]
          Length = 539

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 148/555 (26%), Positives = 254/555 (45%), Gaps = 36/555 (6%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           L+ F K    LG  R++ + +V    I  F      V +P    L+  L V D + I   
Sbjct: 4   LVSFLKG---LGAARLMAMIAVTAALIGFFAFVIMRVTTPQMTTLFTDLSVEDSSGIIKD 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L    I F I + GS I VP   V + R+ LA +G        GYE+FDK ++ G TSF+
Sbjct: 61  LERQAIPFEIRNEGSVIMVPKDKVTRLRMKLA-EGGLPKGGGVGYEIFDKSDALGSTSFV 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
           Q I  +RALEGE+ARTI++I  I AARVH+V+P+   F +    P+AS+++R       +
Sbjct: 120 QNINHLRALEGELARTIRAIDRIQAARVHLVLPERPLFSRETPEPSASIVLRVRGALEPQ 179

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL----TANEMERNILGKSLSIVQAIQHEIE 242
              AIRH+VA+AV  L    V+++D  G+LL      +       G         +  + 
Sbjct: 180 QVRAIRHVVASAVNGLKPQRVSIVDEAGQLLADGAAGDPASDGATGDERR--AGFEKRMR 237

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
             +   +++ +G    R  + A+ + +        +DP+ +V RS +  +++ ++  +  
Sbjct: 238 NQVEAIVSSVVGSGRARVQLTADFDYNKVTQTSDKFDPEGRVLRSSQSREESSQTAAAN- 296

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
           +  VTV   +P           + + + K EE +NYEI+  +     +  ++ R+S+AV+
Sbjct: 297 DGQVTVNNELPGAQAGAG-AAVARDQSKKSEETNNYEISRVTKTEITEAGRVNRISVAVL 355

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS- 421
           V+        G    Q +    L  I  +V +A G + +RGD + + ++ F E       
Sbjct: 356 VDGIYGKNDKGEMVYQERSKDQLDRIAALVRSAIGFDQKRGDQVEVVNLRFAEAPSVPPV 415

Query: 422 -------GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
                  G VQ +  D++      VI   V ++  L+V F+ +  L R   I  A+ G  
Sbjct: 416 AEPGGLLGMVQFTKDDVM-----YVIELAVMMLLGLVVMFMVIRPLVR--RILAAEPGAA 468

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
           G   +   P ++ A  T + P D + L +   ++        +++   V  QS  R+  +
Sbjct: 469 GANGV---PALTDASGTAIGP-DGLPLVAPGPNMIDI-----AQVQGQVHAQSVHRVGEL 519

Query: 535 IEINEERFAKILRKW 549
            + N    A I+R+W
Sbjct: 520 ADRNPNETAAIVRQW 534


>gi|300818642|ref|ZP_07098850.1| flagellar M-ring protein FliF [Escherichia coli MS 107-1]
 gi|300528814|gb|EFK49876.1| flagellar M-ring protein FliF [Escherichia coli MS 107-1]
          Length = 552

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 200/418 (47%), Gaps = 40/418 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R+S+   +
Sbjct: 25  LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRVSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+    ++   S+    SE S    P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPD--------GKPVPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429


>gi|294678998|ref|YP_003579613.1| flagellar M-ring protein FliF [Rhodobacter capsulatus SB 1003]
 gi|294477818|gb|ADE87206.1| flagellar M-ring protein FliF [Rhodobacter capsulatus SB 1003]
          Length = 551

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 125/425 (29%), Positives = 212/425 (49%), Gaps = 19/425 (4%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           + QL+  ++    L  TR +++A   ++     +A   F +      LY  LE +    +
Sbjct: 1   MQQLMAVWQG---LDTTRRVLVAGATILMFAAILALSSFASRSDMALLYAGLEGARAGEV 57

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
             AL    + + +   G SI V ++   + R+ LA +GLP++   +GYEL D ++ FG T
Sbjct: 58  VAALDARAVPYEV--RGDSIYVDAARRDELRMALAGEGLPATG-GAGYELLDGLSGFGTT 114

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
           S M +    RA EGE+ARTI +   I AARVHI  P   SFRK    PTASV +   +  
Sbjct: 115 SQMFDAAYWRAKEGELARTIVANPMIRAARVHIAAPSGQSFRKEN-HPTASVTVTTASGG 173

Query: 184 VYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242
           +  + A+A++ LV++AV  +   DV+++DS   L++  +   N      +       E+ 
Sbjct: 174 LSPTHAKALKFLVSSAVQGMSPDDVSIIDSVAGLISTGDDVFNPAANDRA------EELR 227

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
            N+ + L A +G  N    V  +   + + I E   +PDS+V  S    + +++S+ ++P
Sbjct: 228 SNVERLLEARVGYGNAVVEVSVQTVTEREAITEKRIEPDSRVAISTETQERSEKSDDTKP 287

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
             AVTV  N+P          +S     +  EQ N+E++  +     +   ++RL++AV+
Sbjct: 288 -GAVTVASNLPQ--GDAANGGKSQSQASETREQVNFEVSETTREVLRNPGDIKRLTVAVL 344

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           V+     +  G +A   + D  LA + ++V++A G + +RGD ITI SM F    L  +G
Sbjct: 345 VDGVEGKDANGVTAITPRTDEELAALKELVASAVGFDEKRGDVITIRSMAF--EPLAETG 402

Query: 423 TVQVS 427
           T   S
Sbjct: 403 TEATS 407


>gi|238784726|ref|ZP_04628730.1| Flagellar M-ring protein [Yersinia bercovieri ATCC 43970]
 gi|238714405|gb|EEQ06413.1| Flagellar M-ring protein [Yersinia bercovieri ATCC 43970]
          Length = 572

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 142/549 (25%), Positives = 256/549 (46%), Gaps = 67/549 (12%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  SP Y  LY  L   D   I   L++ NI +R +DNG ++ +P+  V + R+ LA Q
Sbjct: 46  LWAKSPDYRVLYSNLSDRDGGEIVTQLTQLNIPYRFADNGGALLIPADKVHETRLRLAQQ 105

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F ++I   RALEGE+ARTI ++  ++  RVH+ MP 
Sbjct: 106 GLPKGGA-VGFELLDQ-EKFGISQFSEQINYQRALEGELARTIGTLGPVLNVRVHLAMPK 163

Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
              F +    PTASV + A+ P          AI ++V+++V  L  G+VTV+D TG+LL
Sbjct: 164 PSLFVREQKSPTASVTL-ALQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLL 222

Query: 218 T-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           T ++   R++    L     +++  +  I   LA  +G  N  + V A+++  +++  + 
Sbjct: 223 TQSDSAGRDLNAAQLKFTNEVENRFQRRIETILAPMVGSGNVHAQVTAQVDFASREQTDE 282

Query: 277 VYDPDSKVERSIRLSKDAQRSE------TSQPESAVTVEQNMPHVSDRKVPLPRSL---- 326
            Y P+    +    S+    SE            A++ + +   V+  +VP P  +    
Sbjct: 283 EYKPNQAANQGAVRSQQTSNSEQLGGSNVGGVPGALSNQPSATPVAPIEVPQPAPVAGAA 342

Query: 327 ------------------------ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
                                    +  + ++ +N+E++     T      ++RLS+AVV
Sbjct: 343 GAAANNANAANRPATTTAARSTATSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVV 402

Query: 363 VNKG--RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           VN G  +  + +  S DQ      LA++  +   A G ++ RGDT+ + +  F  N   +
Sbjct: 403 VNYGSDKAGKPVALSKDQ------LAQVESLTREAMGFSTDRGDTLNVVNTPF--NATDD 454

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
              + + F    S  F  ++N   +L+  LLV ++     R+L     AKK ++  K+  
Sbjct: 455 GSGLSLPFWKQQS-FFDQLLNGGRYLL-ILLVAWI---LWRKLVRPMIAKK-QLADKAAA 508

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
           S   ++S V T         +  S +++    +N Q R+++ V  Q   R+  + + +  
Sbjct: 509 S---VNSMVQTAQTAE---TVKQSKEELALRKKN-QQRVSAEVQAQ---RIRELADKDPR 558

Query: 541 RFAKILRKW 549
             A ++R+W
Sbjct: 559 IVALVIRQW 567


>gi|309795955|ref|ZP_07690368.1| flagellar M-ring protein FliF [Escherichia coli MS 145-7]
 gi|308120405|gb|EFO57667.1| flagellar M-ring protein FliF [Escherichia coli MS 145-7]
          Length = 552

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 199/418 (47%), Gaps = 40/418 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L +G+VT++D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPLGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+     +   S+    SE S    P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429


>gi|317048599|ref|YP_004116247.1| flagellar M-ring protein FliF [Pantoea sp. At-9b]
 gi|316950216|gb|ADU69691.1| flagellar M-ring protein FliF [Pantoea sp. At-9b]
          Length = 571

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 117/412 (28%), Positives = 197/412 (47%), Gaps = 53/412 (12%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I   L++ NI ++ ++NG ++ VP+  V + R+ LA QG
Sbjct: 48  WAKAPDYRVLYSNLSDEDGGAIVTQLTQMNIPYQFAENGGALMVPADKVHELRLRLAQQG 107

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL DK   FG++ F +++   RALEGE+ARTI+++  + +AR+H+ MP  
Sbjct: 108 LPKGGS-VGFELMDK-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARIHLAMPKP 165

Query: 162 GSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
             F +    P+ASV +     RA++       +A+ H+V+++VP L  G+VTV+D  G+L
Sbjct: 166 TLFVREQKAPSASVTLNLQPGRALDEG---QIQAVVHMVSSSVPGLPPGNVTVVDQAGRL 222

Query: 217 LTANEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LT ++ E R++    L     ++   +  I   L   +G  N  + V A+LN D  +  +
Sbjct: 223 LTRSDSEGRDLNDAQLKYTAEVEGRYQQRIEAILNPIVGQGNVHAQVTAQLNFDRSEQTD 282

Query: 276 IVYDPDSKVERSIRLSKDAQRSE--------------TSQPESAVTVEQNMPHVSDRKV- 320
             Y P+   + S   S+    SE              ++QP  A T     P  ++    
Sbjct: 283 EKYQPNGSPDNSAIRSRQTSTSEQNGSPYPGGVPGALSNQPAPANTAPVTNPPANNANGQ 342

Query: 321 ---------------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365
                              S  +  ++++  NYE++     T  +   ++RLS+AVVVN 
Sbjct: 343 NANGQNNAANGTNTSTTQNSGPSNSRRDDTVNYELDRTIRHTKLNVGDVQRLSVAVVVNY 402

Query: 366 GRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
                   R+ D+GK     D  + +I  +   A G +  RGD+I + +  F
Sbjct: 403 --------RADDKGKEVALNDQQIKQIEDLTREAMGYSQTRGDSINVVNSPF 446


>gi|257095338|ref|YP_003168979.1| flagellar MS-ring protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257047862|gb|ACV37050.1| flagellar M-ring protein FliF [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 578

 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 123/438 (28%), Positives = 212/438 (48%), Gaps = 51/438 (11%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           R ++L++ SV  V + L +AA   +    +  L+  +   D   I  AL + N+ ++ S+
Sbjct: 31  RQKVLLIVSVAAV-VTLLIAAATLLRQGEFKVLFSNIGERDGGAIIAALEQMNVPYKFSE 89

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           +GS+I V  S V   R+ LAAQGLP   +  G+EL +    FG++ F +++   R LEGE
Sbjct: 90  SGSAILVHDSRVHDVRLRLAAQGLPRGGA-VGFELME-AQKFGVSQFAEQVNYQRGLEGE 147

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRH 193
           ++RTIQSI+ + AARVH+ +P    F +   +P+ASV++     R++ P   +    I++
Sbjct: 148 LSRTIQSIAAVQAARVHLAIPKPSVFMREELKPSASVLLNLYPGRSLEP---RQIAGIQN 204

Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL-----SIVQAIQHEIEMNINKA 248
           LVAA+VP L    VT+LD +G LL+  +M+  +L   L       +Q ++  +   +   
Sbjct: 205 LVAASVPQLAPTSVTLLDQSGALLS--QMKSKLLEAGLDPTQVKYIQEVEASVIKRVEDI 262

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD-SKVERSIRLSKDAQRSETS------- 300
           LA  +G  N R  + A+++    +     + P+ +  E SIR  + ++ + TS       
Sbjct: 263 LAPIVGPGNARVQIAADIDFSQSEQTAETHRPNATPPEISIRSQQSSETASTSPAAQGVP 322

Query: 301 -----QPESAVTVEQNMPHV------SDRKVPLPRSLEN--------------TDKKEEQ 335
                QP    T     P V      +    P+P  +                +  K   
Sbjct: 323 GALSNQPPVPATAPLTQPPVPGAGGAAPATPPVPGQINVAGVQAPVASVGPPISTSKNST 382

Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395
            NYE++            ++RLS AVVVN+ +     G++ ++   D+ + +I+ +V  A
Sbjct: 383 VNYEVDKTIRHVRQAVGTIKRLSAAVVVNQRKEVAKDGKAVNKPLPDAEVKQISDLVKEA 442

Query: 396 TGINSRRGDTITITSMDF 413
            G N  RGDTI++ +  F
Sbjct: 443 MGFNKERGDTISVANAPF 460


>gi|332095496|gb|EGJ00512.1| flagellar M-ring protein FliF [Shigella dysenteriae 155-74]
          Length = 473

 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 119/416 (28%), Positives = 200/416 (48%), Gaps = 36/416 (8%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+    ++   S+    SE S    P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTE--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L +   L  S +Q      + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPDGKPLPLSNEQ------MKQIEDLTREAMGFSEKRGDSLNVVNSPF 429


>gi|323948358|gb|EGB44345.1| flagellar M-ring protein FliF [Escherichia coli H120]
          Length = 552

 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 200/418 (47%), Gaps = 40/418 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R+S+   +
Sbjct: 25  LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRVSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+    ++   S+    SE S    P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429


>gi|90104474|gb|ABD86511.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris BisB18]
          Length = 547

 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 148/555 (26%), Positives = 254/555 (45%), Gaps = 36/555 (6%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           L+ F K    LG  R++ + +V    I  F      V +P    L+  L V D + I   
Sbjct: 12  LVSFLKG---LGAARLMAMIAVTAALIGFFAFVIMRVTTPQMTTLFTDLSVEDSSGIIKD 68

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L    I F I + GS I VP   V + R+ LA +G        GYE+FDK ++ G TSF+
Sbjct: 69  LERQAIPFEIRNEGSVIMVPKDKVTRLRMKLA-EGGLPKGGGVGYEIFDKSDALGSTSFV 127

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
           Q I  +RALEGE+ARTI++I  I AARVH+V+P+   F +    P+AS+++R       +
Sbjct: 128 QNINHLRALEGELARTIRAIDRIQAARVHLVLPERPLFSRETPEPSASIVLRVRGALEPQ 187

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL----TANEMERNILGKSLSIVQAIQHEIE 242
              AIRH+VA+AV  L    V+++D  G+LL      +       G         +  + 
Sbjct: 188 QVRAIRHVVASAVNGLKPQRVSIVDEAGQLLADGAAGDPASDGATGDERR--AGFEKRMR 245

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
             +   +++ +G    R  + A+ + +        +DP+ +V RS +  +++ ++  +  
Sbjct: 246 NQVEAIVSSVVGSGRARVQLTADFDYNKVTQTSDKFDPEGRVLRSSQSREESSQTAAAN- 304

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
           +  VTV   +P           + + + K EE +NYEI+  +     +  ++ R+S+AV+
Sbjct: 305 DGQVTVNNELPGAQAGAG-AAVARDQSKKSEETNNYEISRVTKTEITEAGRVNRISVAVL 363

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS- 421
           V+        G    Q +    L  I  +V +A G + +RGD + + ++ F E       
Sbjct: 364 VDGIYGKNDKGEMVYQERSKDQLDRIAALVRSAIGFDQKRGDQVEVVNLRFAEAPSVPPV 423

Query: 422 -------GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
                  G VQ +  D++      VI   V ++  L+V F+ +  L R   I  A+ G  
Sbjct: 424 AEPGGLLGMVQFTKDDVM-----YVIELAVMMLLGLVVMFMVIRPLVR--RILAAEPGAA 476

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
           G   +   P ++ A  T + P D + L +   ++        +++   V  QS  R+  +
Sbjct: 477 GANGV---PALTDASGTAIGP-DGLPLVAPGPNMIDI-----AQVQGQVHAQSVHRVGEL 527

Query: 535 IEINEERFAKILRKW 549
            + N    A I+R+W
Sbjct: 528 ADRNPNETAAIVRQW 542


>gi|71906412|ref|YP_283999.1| flagellar MS-ring protein [Dechloromonas aromatica RCB]
 gi|71846033|gb|AAZ45529.1| Flagellar FliF M-ring protein [Dechloromonas aromatica RCB]
          Length = 584

 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 131/452 (28%), Positives = 220/452 (48%), Gaps = 50/452 (11%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P +  L+  L   D   I+  L + NI  R S++G+ + VPS  V + R+ LA+Q
Sbjct: 52  LWSRQPDWKVLFSNLTEKDGGSIAAILEQQNIPHRYSNSGALL-VPSDRVHEVRLKLASQ 110

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP      G+EL +    FG++ F +++   R LEGE+ARTIQSI  + +ARVH+ +P 
Sbjct: 111 GLPRGGM-VGFELMEN-QKFGVSQFAEQVNYQRGLEGELARTIQSIGSVQSARVHLAIPK 168

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +   +PTASVM+           +   I HLV+++VP L   +VTVLD +G LL+
Sbjct: 169 PSVFVREEQKPTASVMLNLYPGRTLDGGQIAGITHLVSSSVPQLPASNVTVLDQSGALLS 228

Query: 219 ---ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM-DTQQIR 274
              +   E  +    +  V  +++ I   I++ L+  LG DNF+  V A+++   T+Q  
Sbjct: 229 QLKSKLTEAGLDPTQIKYVHDVENSIIKRIDEILSPLLGADNFKVQVAADIDFSQTEQTA 288

Query: 275 EIVYDPDSKVER-SIRLSKDAQRSETSQP----ESAVTVEQNMPHVSDRKVPLPRSLENT 329
           E  Y P++  E  SIR  ++ + +  +Q       A+T +  +P  +    P   +    
Sbjct: 289 E-SYRPNNTPESTSIRSQQNNETANVNQAAGGVPGALTNQPPVPATAPLTQPATGTTPGQ 347

Query: 330 DKKEEQSNYEINT-----------KSIATTHD---NYKLE--------------RLSIAV 361
             K  +   +I+            + I+T+ +   NY+L+              RLS AV
Sbjct: 348 PAKPGEPQGKIDAAGVTAPLNAAGQPISTSKNATINYELDKTIRHTRQGMGNIRRLSAAV 407

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI-----TSMDFLEN 416
           VVN  +  +  G+   +   D+ + +IN++V  A G    RGDT+++     T++D  EN
Sbjct: 408 VVNHRKDVDKTGKPLTKAIPDAEMKQINELVREAMGFTKERGDTLSVANAPFTAIDKSEN 467

Query: 417 QL-FNSGTVQVSFM-DILSRHFATVINALVFL 446
           +L        VS++ DIL       I A +++
Sbjct: 468 ELPIWKDPENVSYIKDILKYLLIAAIIAFLYI 499


>gi|296283238|ref|ZP_06861236.1| flagellar MS-ring protein [Citromicrobium bathyomarinum JL354]
          Length = 514

 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 120/431 (27%), Positives = 209/431 (48%), Gaps = 30/431 (6%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110
           LY  L+ +    I+  L   N+ F +S +G+++  P + + + R+ +A + L       G
Sbjct: 31  LYTDLDPTAAQAITEKLRAQNVPFSLSGDGTAVMAPENRLPELRMSMAGEQL---GGAIG 87

Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170
           YE+ D   +FG++S  +++   RA+EGE+ R+I ++  IV ARVH+VMP+   F     +
Sbjct: 88  YEVLDTQQAFGVSSSREKMNETRAIEGELGRSIATLQSIVNARVHLVMPERALFAPEARK 147

Query: 171 PTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS 230
            +ASV ++        + EAIR+LVAAAVP L    ++++D TG LL A   E    G S
Sbjct: 148 ASASVTVKTRGKLSSGNVEAIRYLVAAAVPELSPESISIVDQTGALL-ARAGEAGEAGAS 206

Query: 231 LSIVQAIQHE--IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV-ERS 287
            +  + +  E  I   I   +   +GV   R+ V AE++ D  +    V+DPD++V  R 
Sbjct: 207 QADERQVATEARIRSQIEALIEPIVGVGKVRAEVSAEIDRDQTREESEVFDPDTQVIARQ 266

Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT-DKKEEQSNYEINTKSIA 346
           I +    Q  E +     VTV   +P   D       + E+  ++  E   ++ +++   
Sbjct: 267 ISVESGDQNRENAGATPGVTVGAQLPEGGDVMGGGGDTRESARNETSEDITFQNSSRRTL 326

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
           TT    K+ RL++AV+V+ G          +QG     +  + ++V  A G ++ RGD++
Sbjct: 327 TTRTPGKVSRLTVAVMVDGG----------EQGLPAPQVQRLTRLVENAVGYDAERGDSV 376

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV-TFLGLHALR--RL 463
            + SM F +              D     ++ +    +F +G LLV   +GL  LR  R 
Sbjct: 377 IVESMPFAQPD---------EIADAEGDFWSDLPLGQLFDLGKLLVIAVVGLFVLRMLRP 427

Query: 464 HNIDDAKKGEV 474
            N+  +  G++
Sbjct: 428 KNVPASAAGQL 438


>gi|187926897|ref|YP_001893242.1| flagellar M-ring protein FliF [Ralstonia pickettii 12J]
 gi|241665226|ref|YP_002983585.1| flagellar M-ring protein FliF [Ralstonia pickettii 12D]
 gi|187728651|gb|ACD29815.1| flagellar M-ring protein FliF [Ralstonia pickettii 12J]
 gi|240867253|gb|ACS64913.1| flagellar M-ring protein FliF [Ralstonia pickettii 12D]
          Length = 611

 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 131/483 (27%), Positives = 228/483 (47%), Gaps = 79/483 (16%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  L+  +  +D   I  AL + N+ +R +D G++I VP + V + R+ LA+QG
Sbjct: 67  WSRAPDYRVLFSNVSDADGGAIIAALQQMNVPYRFADGGTAIMVPEANVHETRLKLASQG 126

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP     +G+EL +    FG + F +++   RALEGE+ARTIQ++  + +ARVH+ +   
Sbjct: 127 LPKGGL-AGFELMEN-QKFGTSQFAEQVNYQRALEGELARTIQAMQEVQSARVHLALSKP 184

Query: 162 GSFRKIGARPTASVMIRAINPSVYKS-------AEAIRHLVAAAVPNLDMGDVTVLDSTG 214
             F +  A+P+ASV++     ++Y          +AI HLV+++VPNL + +VTV+D  G
Sbjct: 185 SVFVREQAKPSASVLL-----TLYPGRMLDRSQVQAIGHLVSSSVPNLPLANVTVVDQAG 239

Query: 215 KLLTANEMERNILG---KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-T 270
           +LL+++  + N  G     L+ V+ I+      I   L   +G DN R+ V A++++D T
Sbjct: 240 RLLSSS-FQDNASGLDPTQLNYVREIEQGYIKRIEAILGPVVGDDNVRAQVTADVDLDNT 298

Query: 271 QQIREIV---YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDR--------- 318
           +Q+ E      DP +   RS   ++  Q    +Q         N P  + R         
Sbjct: 299 EQMAETYRPNQDPSTAAVRSTHTAESTQNKADAQ-GGVPGALSNQPPTAPRMLPTAPAPA 357

Query: 319 -------------KVPLP---------RSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
                        +   P          +   +  ++  +NYE++     T      + R
Sbjct: 358 SQPAAAGPNGANGQAQQPAAANTNATTTNGATSSTRDTTTNYEVDKTVRRTRAAVGTVRR 417

Query: 357 LSIAVVVN---KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           LS+AVVVN    G+  + L         D+ +A++N +V  A G +++RGD++ + +  F
Sbjct: 418 LSVAVVVNYRADGKTWKPLS--------DAEMAKLNALVKDAVGFDAKRGDSVNVVNSQF 469

Query: 414 LENQLFNSGTVQVSFMDI-------LSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
                  SGT+ V   D+       + ++       L   +G L++ F  +  L R  N 
Sbjct: 470 -------SGTLPVPKDDLPLWKQPEMIQYAIQAAKYLALAIGFLILVFAVIRPLIRSLNK 522

Query: 467 DDA 469
            DA
Sbjct: 523 KDA 525


>gi|121608098|ref|YP_995905.1| flagellar M-ring protein FliF [Verminephrobacter eiseniae EF01-2]
 gi|121552738|gb|ABM56887.1| flagellar M-ring protein FliF [Verminephrobacter eiseniae EF01-2]
          Length = 562

 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 120/393 (30%), Positives = 199/393 (50%), Gaps = 30/393 (7%)

Query: 44  NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP 103
           + P Y  L+  L   D   I   LS+ N+ +R+++ G +I VP+  V + R+ LA+QGLP
Sbjct: 60  HQPDYRVLFGNLSDKDGGTIVAQLSQMNVPYRLAEGGGAILVPADRVHEVRLRLASQGLP 119

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
             S   G+EL +  + FG+T F + +   R LEGE+ R+IQ++S + +ARVH+ +P+   
Sbjct: 120 KGSV-VGFELMES-SKFGVTQFQERLNFRRGLEGELTRSIQALSPVQSARVHLALPEQNG 177

Query: 164 FRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT--- 218
           F +   +P+ASV++        + A+   I HLVAA+VP +    V+VLD TGKLL+   
Sbjct: 178 FFREQQKPSASVLVSLYPGRFLERAQLAGIVHLVAASVPEMAPSAVSVLDDTGKLLSRSP 237

Query: 219 --ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM-----DTQ 271
             A + E N   + L  VQ I+ +    I   L   +G DN ++ V A+++       ++
Sbjct: 238 DGAADAEVN--AQQLLHVQRIEQQYTRRILDILEPVVGRDNVKAQVTADVDFTQTESSSE 295

Query: 272 QIREIVYDPDSKVERSIRL---SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSL-- 326
           Q R     P+S   RS +L      A +  T  P  AV+ +  +P  +    P P     
Sbjct: 296 QFRP-NQQPESGAVRSQQLLESRSGANKLPTGIP-GAVSNQPPVPSTAPINGPNPAPNAG 353

Query: 327 ------ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380
                 E T+K+E  +NYE++            ++RLS AVVVN   + +  GR+  +  
Sbjct: 354 GQQGPDEQTNKRESTTNYELDRTVRVVRGSTGTVKRLSAAVVVNYQSVLDK-GRAVSRAL 412

Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
               + ++  +V  + G +S RGD++ + +  F
Sbjct: 413 TPEQIGQMTALVRESIGFDSARGDSVNLMNTPF 445


>gi|91776330|ref|YP_546086.1| flagellar M-ring protein FliF [Methylobacillus flagellatus KT]
 gi|91710317|gb|ABE50245.1| flagellar M-ring protein FliF [Methylobacillus flagellatus KT]
          Length = 586

 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 115/416 (27%), Positives = 190/416 (45%), Gaps = 51/416 (12%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  L+      D   I  AL + N+ +RI+D GS+I VP++ V   R+ LA+Q
Sbjct: 51  LWSQKPEYRVLFSSYSDKDGGAIVAALEQMNVPYRIADGGSAILVPANHVHDVRLRLASQ 110

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP    N G+EL +    FG++ F++++   R LEGE+ RTIQSI  + AAR+H+ MP 
Sbjct: 111 GLPKGG-NIGFELLEN-QKFGVSQFVEQVNFQRGLEGELERTIQSIGAVQAARIHLAMPK 168

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +   +PTASVM+     RA++    +   AI HLVA++VP L   +VTV+D  G 
Sbjct: 169 PTVFTRDQQKPTASVMLNLHPGRALD---QRQVSAIVHLVASSVPELPTSNVTVVDQNGN 225

Query: 216 LLTANEME----RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ 271
           LL+ N  +      +    L  V  +Q  I   +   +A  +G  N  +   AE++    
Sbjct: 226 LLSDNGKDAGNHYQLDPTQLKYVDELQQNIARRVESIIAPLVGAKNVHAEASAEVDFSMV 285

Query: 272 QIREIVYDPDSKVERSIRLSKDAQRSE--------------TSQPESAVTVEQNMPHVSD 317
           +    +Y P+   + +   S     S+              T+QP +  T     P V+ 
Sbjct: 286 EQAAEIYKPNQAPDSAAIRSSQTNESQTLPGQGVGGVPGALTNQPPAPATA----PIVAP 341

Query: 318 RKVPLPRSLEN-------------------TDKKEEQSNYEINTKSIATTHDNYKLERLS 358
              P   +  N                     ++   +NYE++            ++RL+
Sbjct: 342 GTEPTTTTNANVVTTTTTTPPGTTVTTPVMNSERNTTTNYEVDKTIRYQQQPMGGIKRLT 401

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           +AVVVN  +  +  G+   +   D    +I+ +   A G N  RGD++++ +  F+
Sbjct: 402 VAVVVNHKQEVDAQGKVITRPLTDDEKTQISDLAKQAMGFNEERGDSLSVVNGSFM 457


>gi|307312476|ref|ZP_07592110.1| flagellar M-ring protein FliF [Escherichia coli W]
 gi|306907647|gb|EFN38150.1| flagellar M-ring protein FliF [Escherichia coli W]
 gi|315061238|gb|ADT75565.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           W]
 gi|323378185|gb|ADX50453.1| flagellar M-ring protein FliF [Escherichia coli KO11]
          Length = 552

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 199/418 (47%), Gaps = 40/418 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R+S+   +
Sbjct: 25  LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRVSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+     +   S+    SE S    P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429


>gi|310767344|gb|ADP12294.1| flagellar MS-ring protein [Erwinia sp. Ejp617]
          Length = 569

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 141/554 (25%), Positives = 258/554 (46%), Gaps = 70/554 (12%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  L+  L   D   I   L++ N+ ++  D G ++ VP++ V + R+ LA+Q
Sbjct: 46  LWAKQPDYRVLFSNLSNEDGGTIVTQLTQMNVPYKFDDQGGALLVPAAQVHELRLRLASQ 105

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL DK   FG++ F +++   RALEGE+ARTI ++  +  ARVH+ MP 
Sbjct: 106 GLPKGGA-VGFELLDK-EKFGISQFSEQVNYQRALEGELARTISTLGPVKDARVHLAMPK 163

Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
              F +    P+ASV + A+ P          A+ H+V+++V  +  G+VTV+D  G+LL
Sbjct: 164 PTLFVREQKSPSASVTL-ALQPGRALDEGQINAVVHMVSSSVAGMPPGNVTVVDQAGRLL 222

Query: 218 TANEM-ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           T N+   R++    L     ++   +  I   L   LG  N  + V A+++ + ++  + 
Sbjct: 223 TQNDSGGRDLNDTQLKYANDVETRYQQRIEAILGPILGNGNVHAQVTAQIDFNKREKTDE 282

Query: 277 VYDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPHVSDRKVPLP---------- 323
            Y P+S+ ++    S+    SE     SA  V     N P  ++     P          
Sbjct: 283 QYSPNSQPDQQAIRSRQTSNSEQLGGSSAGGVPGALSNQPAPANAAPVTPANNNANNANA 342

Query: 324 ----------------RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367
                           +++ +  + +  +NYE+N   + T  +  +++RLS+AVVVN   
Sbjct: 343 NANNGQPANNAANAAQKTVPSNTRSDNTTNYEVNRTILHTKMNVGEVQRLSVAVVVNY-- 400

Query: 368 LTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG- 422
                 R+   GK     D+ + +I  +   A G + +RGD++ + +  F +N    +  
Sbjct: 401 ------RADAAGKPIALKDAQIKQIENLTREAMGFSEQRGDSLNVVNSQFTDNSDLAAEL 454

Query: 423 --TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
               Q +F+D L        NA  +L+  L+V F+     R+L +    +K E    +  
Sbjct: 455 PFWKQPAFIDQL-------FNAGRWLL-VLIVAFI---LYRKLVSPQLRRKAEQQKAAEE 503

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
           +    + + T     ++ +A+ S ++D  +  R  Q R+++ V  Q   R+  M E +  
Sbjct: 504 AAINAARSSTR----DEGVAV-SLSKDELNQERKSQHRMSAEVLSQ---RIREMSENDPR 555

Query: 541 RFAKILRKWARSEI 554
             A ++R+W + E+
Sbjct: 556 VVALVIRQWMKDEL 569


>gi|300923899|ref|ZP_07139914.1| flagellar M-ring protein FliF [Escherichia coli MS 182-1]
 gi|300419862|gb|EFK03173.1| flagellar M-ring protein FliF [Escherichia coli MS 182-1]
          Length = 552

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 200/418 (47%), Gaps = 40/418 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R+S+   +
Sbjct: 25  LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRVSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKEARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+    ++   S+    SE S    P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPD--------GKPVPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429


>gi|323977881|gb|EGB72967.1| flagellar M-ring protein FliF [Escherichia coli TW10509]
          Length = 552

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 199/418 (47%), Gaps = 40/418 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+    ++   S+    SE S    P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDKSQAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNNGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429


>gi|312946531|gb|ADR27358.1| flagellar MS-ring protein [Escherichia coli O83:H1 str. NRG 857C]
          Length = 552

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 199/418 (47%), Gaps = 40/418 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+    ++   S+    SE S    P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429


>gi|238920311|ref|YP_002933826.1| flagellar MS-ring protein [Edwardsiella ictaluri 93-146]
 gi|238869880|gb|ACR69591.1| flagellar M-ring protein FliF, putative [Edwardsiella ictaluri
           93-146]
          Length = 569

 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 126/450 (28%), Positives = 222/450 (49%), Gaps = 53/450 (11%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           L+LAS + + I++ +A   +  +P Y  LY  +   D   I   L++ NI +R ++NG++
Sbjct: 35  LLLASAVAIAIVVVLA--LWARAPDYRVLYSNISDRDGGAIVTQLTQMNIPYRFANNGTT 92

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           + VP+S V   R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE+ART
Sbjct: 93  LMVPASDVYATRLKLAQQGLPRGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELART 150

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I+++  +V+ARV +  P    F +   +P+ASV +      V    +  AI ++V+++V 
Sbjct: 151 IETLGPVVSARVLLAEPKPSLFVREQKQPSASVTLTLEPGRVLDDGQINAIVYMVSSSVA 210

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VTV+D  G LL+  +   R++    L     ++  ++  I   L   LG  N  
Sbjct: 211 GLPPGNVTVVDQYGHLLSQPDGTGRDLNAAQLKFTAEVESRLQRRIETILQPMLGNGNVH 270

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS---QPESAVTVEQNMP--- 313
           + V A+L+  +++  +  Y P+    ++   SK   +S+ S   Q         N P   
Sbjct: 271 AQVTAQLDFASREQTDEEYTPNQPPNQAAVRSKQINQSDQSGGLQSGGVPGALSNEPAPA 330

Query: 314 ---HVSDRKVPLPRSLENTD----------------------KKEEQSNYEINTKSIATT 348
              H++ +    PRS +  +                      +++E  NYE++     T 
Sbjct: 331 PTGHINGK----PRSAQGGNGAANRSNAVSNNGRQSSRSENFRRDETINYEVDRTIRHTK 386

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
                +ERLS+AVVVN    T+    +  Q K+D    +IN +V  A G +  RGDT+++
Sbjct: 387 ARAGTIERLSVAVVVNYASDTKGKEVALSQQKMD----QINNLVREAMGFSQSRGDTLSV 442

Query: 409 TSMDFLENQLFNSG-----TVQVSFMDILS 433
            +  F  N + ++G       + +F+D+L+
Sbjct: 443 VNTPF--NSVEDNGGELPFWQKQAFIDLLT 470


>gi|156933442|ref|YP_001437358.1| flagellar MS-ring protein [Cronobacter sakazakii ATCC BAA-894]
 gi|156531696|gb|ABU76522.1| hypothetical protein ESA_01260 [Cronobacter sakazakii ATCC BAA-894]
          Length = 565

 Score =  154 bits (390), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 120/409 (29%), Positives = 198/409 (48%), Gaps = 48/409 (11%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +   P Y  LY  L   D   I   L++ NI +  +DNG+SI VP+  V   R+ LA QG
Sbjct: 46  WAKQPEYRVLYSNLSDQDGGAIVTQLTQMNIPYNFADNGASIMVPAEKVYDLRLRLAQQG 105

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  +  ARVH+ MP  
Sbjct: 106 LPKGGA-VGFELMDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKNARVHLAMPKP 163

Query: 162 GSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
             F +    P+ASV +     RA++        AI H+V++AV  L  G+VT++D TG+L
Sbjct: 164 SLFVREQKSPSASVTLNLQPGRALDDG---QVAAIVHMVSSAVAGLPPGNVTLVDQTGRL 220

Query: 217 LT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LT +    R++    L     ++  I+  I   LA  +G  N  + V A+++   ++  E
Sbjct: 221 LTQSGTGARDLNDAQLKYASDVEGRIQRRIESILAPIVGTGNVHAQVTAQIDFSNKEQTE 280

Query: 276 IVY----DPDSKVERSIRLSKDAQ----------RSETSQPESAVTVEQNMP-------- 313
             Y    DP     RS +L+ + Q           + ++QP  A +   + P        
Sbjct: 281 EQYRPNSDPSQMAVRSRQLNTNDQVGGAYPGGVPGALSNQPAPANSAPIDAPAGQNNGQN 340

Query: 314 -------HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
                             S  ++ +++E +NYE++     T  +   ++RLS+AVVVN  
Sbjct: 341 ANGQNAQRTQSTSTAGASSGPHSSQRDETTNYEVDRTIRHTKMNVGDVQRLSVAVVVNYR 400

Query: 367 RL--TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           +L   + L  +A+Q      L +I  +   A G + +RGDT+ + +  F
Sbjct: 401 QLGNGKPLALTAEQ------LKQIEDLTREAMGYSDKRGDTLNVVNSQF 443


>gi|317121815|ref|YP_004101818.1| flagellar M-ring protein FliF [Thermaerobacter marianensis DSM
           12885]
 gi|315591795|gb|ADU51091.1| flagellar M-ring protein FliF [Thermaerobacter marianensis DSM
           12885]
          Length = 560

 Score =  154 bits (390), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 112/340 (32%), Positives = 175/340 (51%), Gaps = 26/340 (7%)

Query: 44  NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP 103
            +P ++ L+ +L+ +D   I   L E  + ++++  G +I VP + V + R+ LAAQGLP
Sbjct: 59  GNPRWEPLFTRLDPADAAAIVSQLEEKGVPYQLAQGGQAILVPGTEVDRLRLELAAQGLP 118

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
              +  G EL D +   G T F +++  VR L+GE+ARTI  + G+ AARVH+V+P+   
Sbjct: 119 REGT-VGLELMDSI-PMGATEFERQVQYVRGLQGELARTISRLDGVEAARVHVVLPEDSP 176

Query: 164 FRKIGA-RPTASVMIRAINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLLTA 219
           F  +G  RP  + ++  + P    + E +R   HLVA+AV  L   DVTV+D+TG+LL+A
Sbjct: 177 F--VGQRRPATAAVLVQLKPGASLAPEQVRSIMHLVASAVEGLKPEDVTVVDTTGRLLSA 234

Query: 220 NEMERN-----ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
                      + G    I +  + E++ ++   L   LG  N  + V AELN D Q I 
Sbjct: 235 EVPPEEGQGAVVQGDRFEIERRFEQELQQSLQTLLEQVLGPGNVIARVNAELNFDQQVIE 294

Query: 275 EIVYDPDSKVERSI-RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVP-LPRSLENT--- 329
             ++ P +   + I R  ++ Q + T Q      V   +P   D  +P  P+ +  T   
Sbjct: 295 RHLFQPPADGGQGILRSIQELQETFTGQ-----GVPVGVP--GDSNIPTYPQLVGGTGQY 347

Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369
            + E  +NYEIN            + RLS+AVVVN G LT
Sbjct: 348 QRTERTANYEINEVVDRVQVAPGAVRRLSVAVVVN-GDLT 386


>gi|323961982|gb|EGB57581.1| flagellar M-ring protein FliF [Escherichia coli H489]
          Length = 552

 Score =  154 bits (390), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 199/418 (47%), Gaps = 40/418 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIVAGSAAVAVMVALI--LWAKTPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+    ++   S+    SE S    P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429


>gi|324005863|gb|EGB75082.1| flagellar M-ring protein FliF [Escherichia coli MS 57-2]
          Length = 552

 Score =  154 bits (390), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 199/418 (47%), Gaps = 40/418 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+    ++   S+    SE S    P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429


>gi|15802373|ref|NP_288399.1| flagellar MS-ring protein [Escherichia coli O157:H7 EDL933]
 gi|15831931|ref|NP_310704.1| flagellar MS-ring protein [Escherichia coli O157:H7 str. Sakai]
 gi|168751866|ref|ZP_02776888.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4113]
 gi|168758251|ref|ZP_02783258.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4401]
 gi|168764438|ref|ZP_02789445.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4501]
 gi|168771544|ref|ZP_02796551.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4486]
 gi|168777364|ref|ZP_02802371.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4196]
 gi|168783334|ref|ZP_02808341.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4076]
 gi|168790304|ref|ZP_02815311.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC869]
 gi|168802284|ref|ZP_02827291.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC508]
 gi|195939244|ref|ZP_03084626.1| flagellar MS-ring protein [Escherichia coli O157:H7 str. EC4024]
 gi|208810543|ref|ZP_03252419.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4206]
 gi|208817037|ref|ZP_03258157.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820542|ref|ZP_03260862.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4042]
 gi|209395809|ref|YP_002271054.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4115]
 gi|217328740|ref|ZP_03444821.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           TW14588]
 gi|254793588|ref|YP_003078425.1| flagellar MS-ring protein [Escherichia coli O157:H7 str. TW14359]
 gi|261227567|ref|ZP_05941848.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261254609|ref|ZP_05947142.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           O157:H7 str. FRIK966]
 gi|12516042|gb|AAG56953.1|AE005416_7 flagellar biosynthesis; basal-body MS(membrane and
           supramembrane)-ring and collar protein [Escherichia coli
           O157:H7 str. EDL933]
 gi|13362145|dbj|BAB36100.1| flagellar hook-basal body MS ring protein FliF [Escherichia coli
           O157:H7 str. Sakai]
 gi|187767394|gb|EDU31238.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4196]
 gi|188014158|gb|EDU52280.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999271|gb|EDU68257.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4076]
 gi|189354893|gb|EDU73312.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4401]
 gi|189359720|gb|EDU78139.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365550|gb|EDU83966.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370217|gb|EDU88633.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC869]
 gi|189375710|gb|EDU94126.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC508]
 gi|208725059|gb|EDZ74766.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4206]
 gi|208731380|gb|EDZ80069.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740665|gb|EDZ88347.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4042]
 gi|209157209|gb|ACI34642.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4115]
 gi|209766878|gb|ACI81751.1| flagellar hook-basal body MS ring protein FliF [Escherichia coli]
 gi|209766880|gb|ACI81752.1| flagellar hook-basal body MS ring protein FliF [Escherichia coli]
 gi|209766882|gb|ACI81753.1| flagellar hook-basal body MS ring protein FliF [Escherichia coli]
 gi|209766886|gb|ACI81755.1| flagellar hook-basal body MS ring protein FliF [Escherichia coli]
 gi|217318087|gb|EEC26514.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           TW14588]
 gi|254592988|gb|ACT72349.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           O157:H7 str. TW14359]
 gi|320191912|gb|EFW66559.1| Flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC1212]
 gi|326342348|gb|EGD66129.1| Flagellar M-ring protein FliF [Escherichia coli O157:H7 str. 1044]
 gi|326344853|gb|EGD68600.1| Flagellar M-ring protein FliF [Escherichia coli O157:H7 str. 1125]
          Length = 552

 Score =  154 bits (390), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 199/418 (47%), Gaps = 40/418 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSWRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+    ++   S+    SE S    P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429


>gi|82543597|ref|YP_407544.1| flagellar MS-ring protein [Shigella boydii Sb227]
 gi|81245008|gb|ABB65716.1| FliF [Shigella boydii Sb227]
 gi|320186947|gb|EFW61661.1| Flagellar M-ring protein FliF [Shigella flexneri CDC 796-83]
 gi|332096898|gb|EGJ01887.1| flagellar M-ring protein FliF [Shigella boydii 3594-74]
          Length = 552

 Score =  154 bits (390), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 198/418 (47%), Gaps = 40/418 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTLSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+     +   S+    SE S    P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429


>gi|323186814|gb|EFZ72134.1| flagellar M-ring protein FliF [Escherichia coli RN587/1]
          Length = 552

 Score =  154 bits (389), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 199/418 (47%), Gaps = 40/418 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+    ++   S+    SE S    P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDETQAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPTNQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEALTREAMGFSEKRGDSLNVVNSPF 429


>gi|320182746|gb|EFW57630.1| Flagellar M-ring protein FliF [Shigella boydii ATCC 9905]
          Length = 552

 Score =  154 bits (389), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 199/418 (47%), Gaps = 40/418 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+    ++   S+    SE S    P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429


>gi|218689933|ref|YP_002398145.1| flagellar MS-ring protein [Escherichia coli ED1a]
 gi|291283115|ref|YP_003499933.1| Flagellar M-ring protein FliF precursor [Escherichia coli O55:H7
           str. CB9615]
 gi|293415248|ref|ZP_06657891.1| flagellar M-ring protein FliF [Escherichia coli B185]
 gi|301644603|ref|ZP_07244592.1| flagellar M-ring protein FliF [Escherichia coli MS 146-1]
 gi|331677820|ref|ZP_08378495.1| flagellar M-ring protein FliF [Escherichia coli H591]
 gi|209766884|gb|ACI81754.1| flagellar hook-basal body MS ring protein FliF [Escherichia coli]
 gi|218427497|emb|CAR08270.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           ED1a]
 gi|290762988|gb|ADD56949.1| Flagellar M-ring protein FliF precursor [Escherichia coli O55:H7
           str. CB9615]
 gi|291432896|gb|EFF05875.1| flagellar M-ring protein FliF [Escherichia coli B185]
 gi|301077078|gb|EFK91884.1| flagellar M-ring protein FliF [Escherichia coli MS 146-1]
 gi|320641786|gb|EFX11174.1| flagellar MS-ring protein [Escherichia coli O157:H7 str. G5101]
 gi|320647145|gb|EFX15978.1| flagellar MS-ring protein [Escherichia coli O157:H- str. 493-89]
 gi|320652429|gb|EFX20727.1| flagellar MS-ring protein [Escherichia coli O157:H- str. H 2687]
 gi|320658031|gb|EFX25793.1| flagellar MS-ring protein [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320658603|gb|EFX26297.1| flagellar MS-ring protein [Escherichia coli O55:H7 str. USDA 5905]
 gi|320668501|gb|EFX35328.1| flagellar MS-ring protein [Escherichia coli O157:H7 str. LSU-61]
 gi|331074280|gb|EGI45600.1| flagellar M-ring protein FliF [Escherichia coli H591]
          Length = 552

 Score =  154 bits (389), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 199/418 (47%), Gaps = 40/418 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+    ++   S+    SE S    P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429


>gi|297538194|ref|YP_003673963.1| flagellar M-ring protein FliF [Methylotenera sp. 301]
 gi|297257541|gb|ADI29386.1| flagellar M-ring protein FliF [Methylotenera sp. 301]
          Length = 551

 Score =  154 bits (389), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 113/392 (28%), Positives = 191/392 (48%), Gaps = 22/392 (5%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  L+      D   I   L + N+ ++ SD+G++I VP+S V +AR+ LA+ 
Sbjct: 47  LWSQQPDYRVLFSNYTDKDGGAIVAELEKMNVPYKFSDSGTAILVPASQVHQARLKLASD 106

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP    N G+E+ +    FG++ F++++   RALEGE+ R+IQSI  +  AR+H+ +P 
Sbjct: 107 GLPKGG-NIGFEILEN-QKFGVSQFVEQVNFQRALEGELERSIQSIGAVETARIHLAIPK 164

Query: 161 MGSFRKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL- 217
              F +    PTASV+  +RA      +   A+ HLVA++VPNL   +VTV+D  G LL 
Sbjct: 165 ASVFVRDQQSPTASVLLNLRAGRSLDAQQVGAVVHLVASSVPNLPAANVTVVDQNGNLLS 224

Query: 218 -TANEMERNILGKS-LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
            T+ +M  N L  + L  +  IQ  I   +   +   +G  N R+   AE++  + +   
Sbjct: 225 DTSKKMGANNLDPTQLKYIDDIQQSIIKRVESIITPIVGAKNVRAEASAEIDFSSLEQAA 284

Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPHVSDRKVPLPRSLEN---- 328
            +Y P+ K + +   S  +  S TS   +A  V     N P   +   P+          
Sbjct: 285 EIYKPNQKPDDAAIRSLQSNESLTSNGGAATGVPGALSNQPP-PNATAPITTPAGAAPGA 343

Query: 329 -------TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI 381
                   ++K   +N+E++     +      ++RL++AVVVN   + +  G+   +   
Sbjct: 344 TAEAAPVNNQKNTTTNFEVDKTVRYSQQGMGGIKRLNVAVVVNNMPVVDKKGKVTYRPLT 403

Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
            +   +IN +   A G N  RGD +T+ +  F
Sbjct: 404 AAEKTQINDLAMQAMGFNKERGDALTVVNSSF 435


>gi|324114219|gb|EGC08192.1| flagellar M-ring protein FliF [Escherichia fergusonii B253]
          Length = 552

 Score =  154 bits (389), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 121/419 (28%), Positives = 201/419 (47%), Gaps = 42/419 (10%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +++ +    +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIVAGSAAVAVIVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D +G LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNVH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS--------------QPESA 305
           + V A+L+  +++  E  Y P+    ++   S+    SE S              QP  A
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDQSQATLRSRQVNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 306 VTVEQNMP---------HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
            +   + P           S      PRS +    + E SNYE++     T  +   ++R
Sbjct: 321 NSAPISTPPANQNNRQQQTSTSSNSGPRSTQ----RNETSNYEVDRTIRHTKMNVGDVQR 376

Query: 357 LSIAVVVNKGRLTE--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           LS+AVVVN     +   L  SA+Q      + +I  +   A G + +RGD++ + +  F
Sbjct: 377 LSVAVVVNYKATPDGKPLPLSAEQ------MKQIEDLTREAMGFSEKRGDSLNVVNSPF 429


>gi|331653350|ref|ZP_08354355.1| flagellar M-ring protein FliF [Escherichia coli M718]
 gi|331049448|gb|EGI21520.1| flagellar M-ring protein FliF [Escherichia coli M718]
          Length = 552

 Score =  154 bits (389), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 198/418 (47%), Gaps = 40/418 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT  N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQFNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGKGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+    ++   S+    SE S    P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429


>gi|317052367|ref|YP_004113483.1| flagellar M-ring protein FliF [Desulfurispirillum indicum S5]
 gi|316947451|gb|ADU66927.1| flagellar M-ring protein FliF [Desulfurispirillum indicum S5]
          Length = 558

 Score =  154 bits (389), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 129/419 (30%), Positives = 213/419 (50%), Gaps = 35/419 (8%)

Query: 17  LGRTRILILASVI---LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73
           L RT+ + LA VI   ++ I+  +      + P    L+  L + D   ++  L+E  + 
Sbjct: 19  LSRTQQITLALVIGASVITIITLIIWAVVASRPGNQVLFSNLAMEDAGEVAAKLAELRVP 78

Query: 74  FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
           + I ++G +I VP ++V + R++LA QGLP   S  G+E+FD     G+T F+Q++   R
Sbjct: 79  YEIHNDGRTILVPGNVVHETRLNLAQQGLP-RGSGVGFEIFDSA-GIGMTEFIQKVNFRR 136

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIR- 192
           AL+GE+ RTI +I GI +ARVHI +P+   F        ASV +R ++P    S + ++ 
Sbjct: 137 ALQGELGRTISAIDGIESARVHIALPERSLFISQDRGAEASVALR-LSPHTRLSGDQVKG 195

Query: 193 --HLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI-QHEIEMNINKA- 248
             HLV+++V  L    VTV+D  G++L     ER+    +LS+ Q + Q  +E N+  A 
Sbjct: 196 IIHLVSSSVEGLTPEGVTVVDEQGRILNDLIQERS-EESTLSVTQLMYQRNMERNLQIAL 254

Query: 249 ---LAAFLGVDNFRSAVVAELNMDT--QQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
              L + LG  N  S V  EL+ D   QQI    YDP + V RS       QR E  + E
Sbjct: 255 DNLLVSVLGQGNSYSNVSLELDFDKVEQQIE--AYDP-ANVPRS------EQRIE--ERE 303

Query: 304 SAVTVEQNMP----HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
                +  +P    +++D+  P    +    ++ E +NYE+       T    +++RL++
Sbjct: 304 QGREAQGGIPGVRANIADQDDPEAGLMTTRSREVETTNYEVGRTLTQITRSRGQIKRLTV 363

Query: 360 AVVVNKGRLTEV---LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           AV VN   + +    + +   Q +    L +I  +V +A G N  RGD + +T++ F E
Sbjct: 364 AVAVNGNYVQQQADGVSQVVYQPRSSEELDKITALVQSAIGYNEGRGDRVVVTNLQFGE 422


>gi|312973845|ref|ZP_07788017.1| flagellar M-ring protein FliF [Escherichia coli 1827-70]
 gi|310332440|gb|EFP99675.1| flagellar M-ring protein FliF [Escherichia coli 1827-70]
          Length = 552

 Score =  154 bits (389), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 198/418 (47%), Gaps = 40/418 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT  N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQFNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGKGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+    ++   S+    SE S    P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429


>gi|99082787|ref|YP_614941.1| flagellar MS-ring protein [Ruegeria sp. TM1040]
 gi|99039067|gb|ABF65679.1| Flagellar M-ring protein [Ruegeria sp. TM1040]
          Length = 571

 Score =  154 bits (389), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 128/398 (32%), Positives = 202/398 (50%), Gaps = 18/398 (4%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           R R++ + + + V I  F       N P    LY  LE S    +  AL ++ +D+ +  
Sbjct: 27  RKRMMAIGATLAV-IFTFFLMSLVANKPSMQLLYAGLESSSAGDVVSALEQSGVDYEV-- 83

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
            G SI VPSS   + R+ LA+QGLP++    GYEL D ++ FG TS M +    RA EGE
Sbjct: 84  RGGSIYVPSSKRDELRMTLASQGLPANGGK-GYELLDSLSGFGTTSQMFDAAYWRAKEGE 142

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAA 197
           +ARTI +   +  ARVHI       F++    PTASV +  +   +  S A AIR LVA+
Sbjct: 143 LARTIVANPHVSQARVHIANTGSNPFQRT-IEPTASVSVTPMGSPITPSQANAIRFLVAS 201

Query: 198 AVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDN 257
           AV  L + +V V+D+ G L+ + E        +    Q ++  +     + + A +G  N
Sbjct: 202 AVAGLAVDNVAVIDANGALIGSPEAAAAAGAGTDDRSQTLRERVL----RLVEARVGQGN 257

Query: 258 FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA-VTVEQNMPHVS 316
               +  E   DT+ IRE   DP S+V  S  +    +R ++SQ ++  VTV  N+P   
Sbjct: 258 AVVEISVETITDTESIREKRVDPQSRVAISTDVE---ERIDSSQNQAGEVTVASNIPDGD 314

Query: 317 DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL-GRS 375
                  ++  +T+   E+ NYEI+            ++RL++AV++N G  TE   G +
Sbjct: 315 AGNGEGSKA--STNATRERVNYEISETEKEIVRGPGAIKRLTVAVLIN-GVTTETAEGEA 371

Query: 376 ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           A + + +  L  + +++SAA G ++ RGD IT+ SMD 
Sbjct: 372 AFEPRPEEELEALRELISAAVGFDAERGDVITLKSMDL 409


>gi|291288216|ref|YP_003505032.1| flagellar M-ring protein FliF [Denitrovibrio acetiphilus DSM 12809]
 gi|290885376|gb|ADD69076.1| flagellar M-ring protein FliF [Denitrovibrio acetiphilus DSM 12809]
          Length = 555

 Score =  154 bits (389), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 132/476 (27%), Positives = 233/476 (48%), Gaps = 27/476 (5%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           MA+ D   QF  +   L   + + +A+ +    +      ++ N P Y  L+  +   D 
Sbjct: 1   MALSDIASQFKDTYLKLSLLQKISVAAALAAVFISVAVIVYWANRPVYKTLFAGMTQDDA 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             +  +L E  I +++ D G+ I++P   V + R++LA + +P     +G ELFDK +SF
Sbjct: 61  ALVVDSLKEQRIPYKLEDGGAKITIPDQYVYETRLNLAKENIPRGGG-AGLELFDK-SSF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           G+T FMQ ++  RAL+GE+ARTI ++  I  ARVH+ +     F        A+V++R  
Sbjct: 119 GMTEFMQNVSYQRALQGELARTITALKEIQEARVHLTVSKDRLFIADEEASKAAVVLRLR 178

Query: 181 NPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN----ILGKSLSIV 234
           + +    AE  AI  LV+ AV  L   +V ++D+ G+LL+    E N    +    L   
Sbjct: 179 SGASLGRAEVQAIASLVSGAVKGLSPENVQIVDTQGRLLSEFLDEENSPLMMTQSQLEYT 238

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
           + I+ ++E  +N+ L A LG  N  + V AE++ + + + +  Y  D+ V RS    +  
Sbjct: 239 KKIERDLERKVNEILGATLGKGNAVAKVTAEIDFNKRDVTKEEYG-DTPVLRS---QQSM 294

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-K 353
           + S T++P+    +     ++++  +      +  +K E+  N+EIN K+I      Y  
Sbjct: 295 EISSTNKPDGPQGIPGVQSNLAEPDIGTAGRNQEYNKTEDTQNFEIN-KTITVEQKAYGT 353

Query: 354 LERLSIAVVVN--KGRLTEVLGRSA--DQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
           ++R+++AVVV+  K R  +  G S    Q + D  +  I  +V+ A G N  RGD I +T
Sbjct: 354 IDRVTVAVVVDDRKIRQQDDNGESTIVSQRRSDDEMRSIRNLVAMAVGYNEPRGDQIEVT 413

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALV--FLVGTLLVTFLGLHALRRL 463
           ++ F         T +    D L R     +  +V  +L+  L+V       +RR+
Sbjct: 414 NISF-------DTTSKDHEYDTLKREKTMELVGMVSKYLLAALIVLLFYFLVIRRI 462


>gi|281179000|dbj|BAI55330.1| flagellar hook-basal body MS ring protein FliF [Escherichia coli
           SE15]
          Length = 552

 Score =  154 bits (389), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 198/418 (47%), Gaps = 40/418 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+     +   S+    SE S    P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEALTREAMGFSEKRGDSLNVVNSPF 429


>gi|218705431|ref|YP_002412950.1| flagellar MS-ring protein [Escherichia coli UMN026]
 gi|293405421|ref|ZP_06649413.1| fliF [Escherichia coli FVEC1412]
 gi|298381064|ref|ZP_06990663.1| flagellar M-ring protein [Escherichia coli FVEC1302]
 gi|218432528|emb|CAR13421.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           UMN026]
 gi|291427629|gb|EFF00656.1| fliF [Escherichia coli FVEC1412]
 gi|298278506|gb|EFI20020.1| flagellar M-ring protein [Escherichia coli FVEC1302]
          Length = 552

 Score =  154 bits (389), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 198/418 (47%), Gaps = 40/418 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+     +   S+    SE S    P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429


>gi|300920157|ref|ZP_07136607.1| flagellar M-ring protein FliF [Escherichia coli MS 115-1]
 gi|300412814|gb|EFJ96124.1| flagellar M-ring protein FliF [Escherichia coli MS 115-1]
          Length = 552

 Score =  154 bits (389), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 198/418 (47%), Gaps = 40/418 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+     +   S+    SE S    P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429


>gi|91211156|ref|YP_541142.1| flagellar MS-ring protein [Escherichia coli UTI89]
 gi|215487138|ref|YP_002329569.1| flagellar MS-ring protein [Escherichia coli O127:H6 str. E2348/69]
 gi|218558795|ref|YP_002391708.1| flagellar MS-ring protein [Escherichia coli S88]
 gi|237705897|ref|ZP_04536378.1| flagellar MS-ring protein [Escherichia sp. 3_2_53FAA]
 gi|300940393|ref|ZP_07154978.1| flagellar M-ring protein FliF [Escherichia coli MS 21-1]
 gi|312967135|ref|ZP_07781353.1| flagellar M-ring protein FliF [Escherichia coli 2362-75]
 gi|91072730|gb|ABE07611.1| flagellar M-ring protein [Escherichia coli UTI89]
 gi|215265210|emb|CAS09600.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218365564|emb|CAR03291.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           S88]
 gi|226900654|gb|EEH86913.1| flagellar MS-ring protein [Escherichia sp. 3_2_53FAA]
 gi|294491623|gb|ADE90379.1| flagellar M-ring protein FliF [Escherichia coli IHE3034]
 gi|300454787|gb|EFK18280.1| flagellar M-ring protein FliF [Escherichia coli MS 21-1]
 gi|307626586|gb|ADN70890.1| flagellar MS-ring protein [Escherichia coli UM146]
 gi|312288599|gb|EFR16501.1| flagellar M-ring protein FliF [Escherichia coli 2362-75]
 gi|323952431|gb|EGB48304.1| flagellar M-ring protein FliF [Escherichia coli H252]
 gi|323956334|gb|EGB52077.1| flagellar M-ring protein FliF [Escherichia coli H263]
          Length = 552

 Score =  154 bits (389), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 198/418 (47%), Gaps = 40/418 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+     +   S+    SE S    P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEALTREAMGFSEKRGDSLNVVNSPF 429


>gi|26248206|ref|NP_754246.1| flagellar MS-ring protein [Escherichia coli CFT073]
 gi|227885633|ref|ZP_04003438.1| flagellar MS-ring protein [Escherichia coli 83972]
 gi|300975548|ref|ZP_07173059.1| flagellar M-ring protein FliF [Escherichia coli MS 45-1]
 gi|301050702|ref|ZP_07197563.1| flagellar M-ring protein FliF [Escherichia coli MS 185-1]
 gi|306814239|ref|ZP_07448405.1| flagellar MS-ring protein [Escherichia coli NC101]
 gi|26108610|gb|AAN80813.1|AE016762_66 Flagellar M-ring protein [Escherichia coli CFT073]
 gi|227837206|gb|EEJ47672.1| flagellar MS-ring protein [Escherichia coli 83972]
 gi|300297625|gb|EFJ54010.1| flagellar M-ring protein FliF [Escherichia coli MS 185-1]
 gi|300410317|gb|EFJ93855.1| flagellar M-ring protein FliF [Escherichia coli MS 45-1]
 gi|305852398|gb|EFM52849.1| flagellar MS-ring protein [Escherichia coli NC101]
 gi|307553951|gb|ADN46726.1| flagellar M-ring protein FliF [Escherichia coli ABU 83972]
 gi|315290255|gb|EFU49633.1| flagellar M-ring protein FliF [Escherichia coli MS 153-1]
          Length = 552

 Score =  154 bits (389), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 198/418 (47%), Gaps = 40/418 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+     +   S+    SE S    P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEALTREAMGFSEKRGDSLNVVNSPF 429


>gi|320175473|gb|EFW50572.1| Flagellar M-ring protein FliF [Shigella dysenteriae CDC 74-1112]
          Length = 552

 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 198/418 (47%), Gaps = 40/418 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+     +   S+    SE S    P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429


>gi|218699502|ref|YP_002407131.1| flagellar MS-ring protein [Escherichia coli IAI39]
 gi|218369488|emb|CAR17255.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           IAI39]
          Length = 552

 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 198/418 (47%), Gaps = 40/418 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+     +   S+    SE S    P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEALTREAMGFSEKRGDSLNVVNSPF 429


>gi|191168288|ref|ZP_03030081.1| flagellar M-ring protein FliF [Escherichia coli B7A]
 gi|190901660|gb|EDV61416.1| flagellar M-ring protein FliF [Escherichia coli B7A]
          Length = 552

 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 199/418 (47%), Gaps = 40/418 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVNQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+    ++   S+    SE S    P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429


>gi|16129885|ref|NP_416448.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           str. K-12 substr. MG1655]
 gi|89108770|ref|AP_002550.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           str. K-12 substr. W3110]
 gi|157161409|ref|YP_001458727.1| flagellar MS-ring protein [Escherichia coli HS]
 gi|170081582|ref|YP_001730902.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           str. K-12 substr. DH10B]
 gi|170682432|ref|YP_001743307.1| flagellar MS-ring protein [Escherichia coli SMS-3-5]
 gi|193071157|ref|ZP_03052081.1| flagellar M-ring protein FliF [Escherichia coli E110019]
 gi|218554518|ref|YP_002387431.1| flagellar MS-ring protein [Escherichia coli IAI1]
 gi|238901143|ref|YP_002926939.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           BW2952]
 gi|253773113|ref|YP_003035944.1| flagellar MS-ring protein [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|260855913|ref|YP_003229804.1| flagellar basal-body MS-ring and collar protein FliF [Escherichia
           coli O26:H11 str. 11368]
 gi|300822292|ref|ZP_07102433.1| flagellar M-ring protein FliF [Escherichia coli MS 119-7]
 gi|301018212|ref|ZP_07182727.1| flagellar M-ring protein FliF [Escherichia coli MS 69-1]
 gi|331663434|ref|ZP_08364344.1| flagellar M-ring protein FliF [Escherichia coli TA143]
 gi|331668629|ref|ZP_08369477.1| flagellar M-ring protein FliF [Escherichia coli TA271]
 gi|2506421|sp|P25798|FLIF_ECOLI RecName: Full=Flagellar M-ring protein
 gi|1736604|dbj|BAA15763.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           str. K12 substr. W3110]
 gi|1788248|gb|AAC75005.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           str. K-12 substr. MG1655]
 gi|157067089|gb|ABV06344.1| flagellar M-ring protein FliF [Escherichia coli HS]
 gi|169889417|gb|ACB03124.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           str. K-12 substr. DH10B]
 gi|170520150|gb|ACB18328.1| flagellar M-ring protein FliF [Escherichia coli SMS-3-5]
 gi|192955552|gb|EDV86031.1| flagellar M-ring protein FliF [Escherichia coli E110019]
 gi|218361286|emb|CAQ98870.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           IAI1]
 gi|238861094|gb|ACR63092.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           BW2952]
 gi|253324157|gb|ACT28759.1| flagellar M-ring protein FliF [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|257754562|dbj|BAI26064.1| flagellar basal-body MS-ring and collar protein FliF [Escherichia
           coli O26:H11 str. 11368]
 gi|260448949|gb|ACX39371.1| flagellar M-ring protein FliF [Escherichia coli DH1]
 gi|284921846|emb|CBG34921.1| flagellar M-ring protein [Escherichia coli 042]
 gi|300399799|gb|EFJ83337.1| flagellar M-ring protein FliF [Escherichia coli MS 69-1]
 gi|300525175|gb|EFK46244.1| flagellar M-ring protein FliF [Escherichia coli MS 119-7]
 gi|309702227|emb|CBJ01544.1| flagellar M-ring protein [Escherichia coli ETEC H10407]
 gi|315136575|dbj|BAJ43734.1| flagellar MS-ring protein [Escherichia coli DH1]
 gi|323152731|gb|EFZ39003.1| flagellar M-ring protein FliF [Escherichia coli EPECa14]
 gi|323937208|gb|EGB33488.1| flagellar M-ring protein FliF [Escherichia coli E1520]
 gi|324118987|gb|EGC12876.1| flagellar M-ring protein FliF [Escherichia coli E1167]
 gi|331059233|gb|EGI31210.1| flagellar M-ring protein FliF [Escherichia coli TA143]
 gi|331063823|gb|EGI35734.1| flagellar M-ring protein FliF [Escherichia coli TA271]
          Length = 552

 Score =  154 bits (388), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 198/418 (47%), Gaps = 40/418 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+     +   S+    SE S    P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429


>gi|332161342|ref|YP_004297919.1| flagellar MS-ring protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325665572|gb|ADZ42216.1| flagellar MS-ring protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330863306|emb|CBX73430.1| flagellar M-ring protein [Yersinia enterocolitica W22703]
          Length = 559

 Score =  154 bits (388), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 135/536 (25%), Positives = 243/536 (45%), Gaps = 54/536 (10%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  SP Y  LY  L   D   I   L++ NI +R +DNG ++ +P+  V + R+ LA Q
Sbjct: 46  LWAKSPDYRVLYSNLNDRDGGDIVTQLTQLNIPYRFADNGGALLIPADKVHETRLRLAQQ 105

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI ++  ++  RVH+ MP 
Sbjct: 106 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIGTLGPVLNVRVHLAMPK 163

Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
              F +    PTASV + A+ P          AI ++V+++V  L   +VTV+D TG+LL
Sbjct: 164 PSLFVREQKSPTASVTL-ALQPGRALDDGQINAIVYMVSSSVAGLPPANVTVVDQTGRLL 222

Query: 218 T-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           T ++   R++    L     +++  +  I   LA  +G  N  + V A+++  +++  + 
Sbjct: 223 TQSDSAGRDLNAAQLKFTNEVENRFQRRIETILAPMVGSGNVHAQVTAQVDFASREQTDE 282

Query: 277 VYDPDSKVERSIRLSKDAQRSE------------------TSQPESAVTVEQNMPHVSDR 318
            Y P+    +    S+    SE                  ++ P + + V Q  P     
Sbjct: 283 EYKPNQAANQGAVRSQQVSTSEQLGGTNVGGVPGALSNQPSATPVAPIEVPQATPAAGAG 342

Query: 319 KVPLPRSLENT---DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG--RLTEVLG 373
                     T    + ++ +N+E++     T      ++RLS+AVVVN G  +  + + 
Sbjct: 343 AAANAAKQTATSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVNYGSDKAGKPIA 402

Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433
            S DQ      LA++  +   A G ++ RGDT+ + +  F  N   ++    + F    S
Sbjct: 403 LSKDQ------LAQVESLTREAMGFSTVRGDTLNVVNTPF--NATDDASGSNLPFWQQPS 454

Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493
             F  ++N   +L+  L+   L    +R L  I   ++ +    S+ +    +    T  
Sbjct: 455 -FFDQLLNIGRYLLILLVAWILWRKLVRPL--IAKKQEADKAAASVNNIVQAAQTTETAK 511

Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549
              + +AL   N          Q R+++ V  Q   R+  + + +    A ++R+W
Sbjct: 512 QTKEELALRKKN----------QQRVSAEVQAQ---RIRELADKDPRIVALVIRQW 554


>gi|320194349|gb|EFW68980.1| Flagellar M-ring protein FliF [Escherichia coli WV_060327]
          Length = 552

 Score =  154 bits (388), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 119/416 (28%), Positives = 199/416 (47%), Gaps = 36/416 (8%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+     +   S+    SE S    P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLT--EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L   + L  S +Q      + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPGGKPLPLSNEQ------MKQIEALTREAMGFSEKRGDSLNVVNSPF 429


>gi|37525871|ref|NP_929215.1| flagellar MS-ring protein [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36785300|emb|CAE14241.1| flagellar basal-body M-ring protein [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 567

 Score =  154 bits (388), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 126/424 (29%), Positives = 207/424 (48%), Gaps = 40/424 (9%)

Query: 26  ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISV 85
           A+V +V I LF+    ++ SP Y  LY  L   D   I   L++ NI +R ++NG++I +
Sbjct: 36  AAVAIV-IALFL----WLRSPDYRVLYSNLSDKDGGDIVTQLTQLNIPYRFAENGAAIMI 90

Query: 86  PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145
           P+  V + R+ LA QGLP   + +G+EL DK   FG++ F +++   RALEGE++RTI+S
Sbjct: 91  PAEQVHETRLRLAQQGLPKGGA-AGFELLDK-EKFGISQFSEQVNYQRALEGELSRTIES 148

Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLD 203
           +  +  ARVH+ +P    F +    P+ASV +  +        +  AI H+V+++V  L 
Sbjct: 149 LGPVQNARVHLALPKPSLFVREQKSPSASVTVGLLQGRTLDEGQINAIVHMVSSSVAGLP 208

Query: 204 MGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAV 262
            G+VT++D TG+LLT A+   R++    L  +Q +++  +  I   L   +G  N  + V
Sbjct: 209 PGNVTIVDQTGRLLTQADATGRDLNTSQLKYIQEVENRFQHRIETILTPVVGRGNVHAQV 268

Query: 263 VAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS--------------QPESAV-- 306
            A+++   ++     Y P+    ++   SK    SE S              QP S    
Sbjct: 269 TAQVDFSRREETAEEYKPNQPPNQAAVRSKQLSESEQSGGPQVGGIPGALSNQPSSPPSA 328

Query: 307 ------TVEQNMPHVSDRKV-PLPRSLENT------DKKEEQSNYEINTKSIATTHDNYK 353
                 T E N    SD+K      S E T      ++++E +NYE++            
Sbjct: 329 PIDKPNTKENNKNDKSDKKASSAGNSNERTVNSNRNNRRDETTNYEVDRTIRHVQQQAGG 388

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           +ERLS+AVVVN     E       Q      L +I  +   A G +  RGD++ + +  F
Sbjct: 389 VERLSVAVVVNY-VTVEGKNGPETQALTPEQLTKIEALTREAMGFSKERGDSLNVVNTPF 447

Query: 414 LENQ 417
            E++
Sbjct: 448 TESK 451


>gi|205357292|ref|ZP_02346550.2| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205322643|gb|EDZ10482.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 585

 Score =  154 bits (388), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 122/415 (29%), Positives = 198/415 (47%), Gaps = 57/415 (13%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 63  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 122

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 123 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 180

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    P+ASV +     RA++        A+ HLV++AV  L  G+VT++D +G 
Sbjct: 181 PSLFVREQKSPSASVTVTLEPGRALD---EGQISAVVHLVSSAVAGLPPGNVTLVDQSGH 237

Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  
Sbjct: 238 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 297

Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309
           E  Y P+    ++   S+    SE              ++QP    E+ +          
Sbjct: 298 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 357

Query: 310 QNMPHVSDRKVPL---------PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           QN P  S               PRS +    + E SNYE++     T  +   +ERLS+A
Sbjct: 358 QNTPQTSTSTSTSTSTNSNSAGPRSTQ----RNETSNYEVDRTIRHTKMNVGDIERLSVA 413

Query: 361 VVVNKGRLTE--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           VVVN   L +   L  +ADQ K      +I  +   A G + +RGDT+ + +  F
Sbjct: 414 VVVNYKTLADGKPLPLTADQMK------QIEDLTREAMGFSDKRGDTLNVVNSPF 462


>gi|258404702|ref|YP_003197444.1| flagellar M-ring protein FliF [Desulfohalobium retbaense DSM 5692]
 gi|257796929|gb|ACV67866.1| flagellar M-ring protein FliF [Desulfohalobium retbaense DSM 5692]
          Length = 504

 Score =  154 bits (388), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 120/411 (29%), Positives = 201/411 (48%), Gaps = 29/411 (7%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           R R L L  V L+ + +F           Y  LY  +   + + +   L ++N+ +++ D
Sbjct: 27  RRRKLSLLVVGLLCVAVFTFLILQARVADYQLLYADMTQQEASSVVDWLQDSNVSYQLRD 86

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
            GSSI VP+  V K R+ LA  GLP      G+E+FD+   FG+T F Q++   RAL+GE
Sbjct: 87  QGSSIYVPAGQVYKTRLDLAGDGLPQGQ-GVGFEIFDQ-QRFGVTQFTQQVNYQRALQGE 144

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVA 196
           +AR++ +++ + +ARVH+V+P+    R+   +  ASV++         S +   I  LV+
Sbjct: 145 LARSVATLTSVQSARVHLVLPERQFLREQQEKAKASVVVEFAPGQGLDSNQIKGIIRLVS 204

Query: 197 AAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAFL 253
            +V  +   +VTV+DS G +L+  E E +   I  + L   QA++ + E      L    
Sbjct: 205 GSVEGMAANNVTVVDSQGNVLSGGEEEDSGSPISPEKLEYKQAVEGQYEQRAQALLDRVF 264

Query: 254 GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP 313
           G +     V A ++  ++   E +YDPDS V RS          +TS+  S  T  +   
Sbjct: 265 GPNKALVRVTAAIDFVSKHTTEELYDPDSIVPRS---------EKTSESNSGTTAREE-- 313

Query: 314 HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373
             ++      RS E+T    E  NYEI+      T     ++ LS+AV+V +    + L 
Sbjct: 314 --TEGNAGGQRSSEST----ETVNYEISRTVNEITKTMGGVKNLSVAVLVGQ----QFLQ 363

Query: 374 RSADQGKIDSYLAE-INKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
              + G  + +  E + ++VS+A G+   RGD+I + +M   E    +SGT
Sbjct: 364 NKGNGGAAEGHSVESLQRLVSSALGLQPDRGDSIEVVAMPVQEQAGLSSGT 414


>gi|218695543|ref|YP_002403210.1| flagellar MS-ring protein [Escherichia coli 55989]
 gi|218352275|emb|CAU98032.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           55989]
          Length = 552

 Score =  154 bits (388), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 117/418 (27%), Positives = 197/418 (47%), Gaps = 40/418 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+     V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIVTGSAAVAVMVALI--LWAKTPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+     +   S+    SE S    P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNEGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEALTREAMGFSEKRGDSLNVVNSPF 429


>gi|218549263|ref|YP_002383054.1| flagellar MS-ring protein [Escherichia fergusonii ATCC 35469]
 gi|218356804|emb|CAQ89432.1| flagellar basal-body MS-ring and collar protein [Escherichia
           fergusonii ATCC 35469]
 gi|325497680|gb|EGC95539.1| flagellar MS-ring protein [Escherichia fergusonii ECD227]
          Length = 552

 Score =  153 bits (387), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 121/419 (28%), Positives = 201/419 (47%), Gaps = 42/419 (10%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +++ +    +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIVAGSAAVAVIVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEVSGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D +G LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNVH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS--------------QPESA 305
           + V A+L+  +++  E  Y P+    ++   S+    SE S              QP  A
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDQSQATLRSRQVNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 306 VTVEQNMP---------HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
            +   + P           S      PRS +    + E SNYE++     T  +   ++R
Sbjct: 321 NSAPISTPPANQNNRQQQTSTSSNSGPRSTQ----RNETSNYEVDRTIRHTKMNVGDVQR 376

Query: 357 LSIAVVVNKGRLTE--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           LS+AVVVN     +   L  SA+Q      + +I  +   A G + +RGD++ + +  F
Sbjct: 377 LSVAVVVNYKATPDGKPLPLSAEQ------MKQIEDLTREAMGFSEKRGDSLNVVNSPF 429


>gi|323940403|gb|EGB36594.1| flagellar M-ring protein FliF [Escherichia coli E482]
          Length = 552

 Score =  153 bits (387), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 197/418 (47%), Gaps = 40/418 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT  N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQFNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+     +   S+    SE S    P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429


>gi|157158866|ref|YP_001463240.1| flagellar MS-ring protein [Escherichia coli E24377A]
 gi|157080896|gb|ABV20604.1| flagellar M-ring protein FliF [Escherichia coli E24377A]
          Length = 552

 Score =  153 bits (387), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 119/418 (28%), Positives = 197/418 (47%), Gaps = 40/418 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I +I  +  ARVH+ MP    F +    P+ASV I  +        +  AI HLV++AV 
Sbjct: 141 IATIGPVKGARVHLAMPKPSLFVREQKSPSASVTINLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+     +   S+    SE S    P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429


>gi|167034925|ref|YP_001670156.1| flagellar MS-ring protein [Pseudomonas putida GB-1]
 gi|166861413|gb|ABY99820.1| flagellar M-ring protein FliF [Pseudomonas putida GB-1]
          Length = 592

 Score =  153 bits (387), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 140/564 (24%), Positives = 248/564 (43%), Gaps = 73/564 (12%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92
           + +  A   +   P Y  LY  L   D  ++   L+ A+I + +  N  ++ V +  + +
Sbjct: 50  VAIGFAVVLWSQQPDYRPLYGSLSGMDTKQVMDTLAAADIPYNVEPNSGALLVKADDLSR 109

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
           AR+ LAA G+  S  N G+EL DK    G + FM+     R+LEGE+ART+ S++ + AA
Sbjct: 110 ARLKLAAAGVAPSDGNVGFELLDKEQGLGTSQFMEATRYRRSLEGELARTVSSLNNVKAA 169

Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVL 210
           RVH+ +P    F +   +P+ASV++        ++ +  AI +LVA +VP LD   VTV+
Sbjct: 170 RVHLAIPKSSVFVRDERKPSASVLVELYPGRALEAGQVMAIVNLVATSVPELDKSQVTVV 229

Query: 211 DSTGKLLTANEMERNIL--GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM 268
           D  G LL+    + ++   GK     + ++  +   ++  L   LG D +++ V A+L+ 
Sbjct: 230 DQKGNLLSEQIQDSSLTQAGKQFDYSRRVESMLTQRVHNILQPVLGNDRYKAEVSADLDF 289

Query: 269 DTQQIREIVYDPDSKVERSIRLSKDAQRSET-----------SQPESAVTVEQ------- 310
              +     ++PD    RS + S D QR+ +           +QP  A +  Q       
Sbjct: 290 SAVESTSEQFNPDQPALRSEQ-SVDEQRASSQGPQGVPGALSNQPPGAASAPQTTGGAAT 348

Query: 311 --------------NMPHVSDRKVPLPRSLENTDKKEEQS--NYEINTKSIATTHDNYKL 354
                         N   + D     P        K +QS  N+E++     T     ++
Sbjct: 349 PASAIQPGQPLVDANGQQIMDPATGQPMLAPYPSDKRQQSTKNFELDRSISHTRQQQGRM 408

Query: 355 ERLSIAVVVN-KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
            RLS+AVVV+ + +L    G +         LA   ++V  A G ++ RGD++T+ ++ F
Sbjct: 409 TRLSVAVVVDDQVKLDPATGDATRAPWAAEDLARFTRLVQDAVGFDASRGDSVTVINVPF 468

Query: 414 LENQLFNSGTV----QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
             ++      +    Q  F DI+ +    V+  LV + G L            L+NI   
Sbjct: 469 AADRGEEIADIAFYQQPWFWDIV-KQVLGVVFILVLVFGVLRPV---------LNNITG- 517

Query: 470 KKGEVGGKSILSPPPISSAVTTGL---MPNDNIALDSSNQDIF-SHSRNLQSRINSYVSK 525
                GGK   S   +      GL   + ND ++L      +  S S   ++++N+    
Sbjct: 518 -----GGKQAASDSDMELGGMMGLDGELANDRVSLGGPTSILLPSPSEGYEAQLNA---- 568

Query: 526 QSDLRLLHMIEINEERFAKILRKW 549
                +  ++  +  R A++++ W
Sbjct: 569 -----IKGLVAEDPGRVAQVVKDW 587


>gi|170019729|ref|YP_001724683.1| flagellar MS-ring protein [Escherichia coli ATCC 8739]
 gi|188492347|ref|ZP_02999617.1| flagellar M-ring protein FliF [Escherichia coli 53638]
 gi|300951563|ref|ZP_07165396.1| flagellar M-ring protein FliF [Escherichia coli MS 116-1]
 gi|300956546|ref|ZP_07168828.1| flagellar M-ring protein FliF [Escherichia coli MS 175-1]
 gi|169754657|gb|ACA77356.1| flagellar M-ring protein FliF [Escherichia coli ATCC 8739]
 gi|188487546|gb|EDU62649.1| flagellar M-ring protein FliF [Escherichia coli 53638]
 gi|300316646|gb|EFJ66430.1| flagellar M-ring protein FliF [Escherichia coli MS 175-1]
 gi|300449190|gb|EFK12810.1| flagellar M-ring protein FliF [Escherichia coli MS 116-1]
 gi|332093105|gb|EGI98169.1| flagellar M-ring protein FliF [Shigella boydii 5216-82]
          Length = 552

 Score =  153 bits (387), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 197/418 (47%), Gaps = 40/418 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT  N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQFNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+     +   S+    SE S    P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429


>gi|110642044|ref|YP_669774.1| flagellar MS-ring protein [Escherichia coli 536]
 gi|191173305|ref|ZP_03034835.1| flagellar M-ring protein FliF [Escherichia coli F11]
 gi|110343636|gb|ABG69873.1| flagellar M-ring protein [Escherichia coli 536]
 gi|190906422|gb|EDV66031.1| flagellar M-ring protein FliF [Escherichia coli F11]
          Length = 552

 Score =  153 bits (387), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 125/442 (28%), Positives = 207/442 (46%), Gaps = 47/442 (10%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+     +   S+    SE S    P        N P  +
Sbjct: 261 AQVSAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPTNQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F  
Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEALTREAMGFSEKRGDSLNVVNSPF-- 429

Query: 416 NQLFNSGTV-----QVSFMDIL 432
           N    SG       Q +F+D L
Sbjct: 430 NSSDESGGALPFWQQQAFIDQL 451


>gi|256017869|ref|ZP_05431734.1| flagellar MS-ring protein [Shigella sp. D9]
 gi|332278895|ref|ZP_08391308.1| flagellar basal-body MS-ring and collar protein [Shigella sp. D9]
 gi|332101247|gb|EGJ04593.1| flagellar basal-body MS-ring and collar protein [Shigella sp. D9]
          Length = 552

 Score =  153 bits (387), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 117/418 (27%), Positives = 198/418 (47%), Gaps = 40/418 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R+S+   +
Sbjct: 25  LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRVSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT +    R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQSSTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+     +   S+    SE S    P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429


>gi|331673452|ref|ZP_08374220.1| flagellar M-ring protein FliF [Escherichia coli TA280]
 gi|331069650|gb|EGI41037.1| flagellar M-ring protein FliF [Escherichia coli TA280]
          Length = 552

 Score =  153 bits (387), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 120/422 (28%), Positives = 199/422 (47%), Gaps = 48/422 (11%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+    ++   S+    SE S    P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPL---------------------PRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
           +   P+                     PRS +    + E SNYE++     T  +   ++
Sbjct: 321 N-NAPISTPPANQNNRQQQANTTSNSGPRSTQ----RNETSNYEVDRTIRHTKMNVGDVQ 375

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSM 411
           RLS+AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + + 
Sbjct: 376 RLSVAVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNS 427

Query: 412 DF 413
            F
Sbjct: 428 PF 429


>gi|323968354|gb|EGB63761.1| flagellar M-ring protein FliF [Escherichia coli M863]
 gi|327253070|gb|EGE64724.1| flagellar M-ring protein FliF [Escherichia coli STEC_7v]
          Length = 552

 Score =  153 bits (387), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 116/418 (27%), Positives = 204/418 (48%), Gaps = 40/418 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPAEKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ +P    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLALPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDS-KVERSIRLSK--DAQRSETSQPESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+  K + ++R  +  ++++S +  P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDKSQAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429


>gi|17988496|ref|NP_541129.1| flagellar M-ring protein FLIF [Brucella melitensis bv. 1 str. 16M]
 gi|256042873|ref|ZP_05445819.1| flagellar MS-ring protein [Brucella melitensis bv. 1 str. Rev.1]
 gi|260564110|ref|ZP_05834595.1| flagellar M-ring protein [Brucella melitensis bv. 1 str. 16M]
 gi|265989308|ref|ZP_06101865.1| flagellar M-ring protein [Brucella melitensis bv. 1 str. Rev.1]
 gi|17984287|gb|AAL53393.1| flagellar m-ring protein flif [Brucella melitensis bv. 1 str. 16M]
 gi|260151753|gb|EEW86846.1| flagellar M-ring protein [Brucella melitensis bv. 1 str. 16M]
 gi|262999977|gb|EEZ12667.1| flagellar M-ring protein [Brucella melitensis bv. 1 str. Rev.1]
          Length = 333

 Score =  153 bits (387), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 105/315 (33%), Positives = 176/315 (55%), Gaps = 18/315 (5%)

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  ++ +
Sbjct: 4   SIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNNRND 63

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
           +A  VEQN+P    +      S E TD++EE +NYE+N+ +++T  D Y ++RLSIAVV+
Sbjct: 64  NATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSMTVSTVSDGYSIKRLSIAVVI 123

Query: 364 NKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           ++ RL +  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL++   +  
Sbjct: 124 DQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDSAGADME 183

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA-------KKGEVG 475
            V   + D L R   +  NAL  L    L+ + GL  L R  N+  A       + GEV 
Sbjct: 184 PVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAGEVA 243

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS-RNLQSRINSYVSKQSDLRLLHM 534
                +P  I  A + G      I   ++  D    S  +L+ R+       + LRL  M
Sbjct: 244 -----TPNFIGGAESVGEGVQAVIGGPAAYADQMKTSLSDLRQRMR----MPAKLRLEQM 294

Query: 535 IEINEERFAKILRKW 549
           IE++EER A +L++W
Sbjct: 295 IEMDEERVAAVLKQW 309


>gi|117923585|ref|YP_864202.1| flagellar M-ring protein FliF [Magnetococcus sp. MC-1]
 gi|117607341|gb|ABK42796.1| flagellar M-ring protein FliF [Magnetococcus sp. MC-1]
          Length = 551

 Score =  153 bits (386), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 129/466 (27%), Positives = 214/466 (45%), Gaps = 28/466 (6%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
            F S    GR  ++I A   +  + +  A  +F   P    LY  L   +  RI   L +
Sbjct: 22  LFGSLPLTGRNGVIIAA---MASVFILAAIIWFATRPSMKVLYSGLPDLESARIVEQLGK 78

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
             + + +   G++I +P   V   R+ +A  GLP S+   G+E+FD  +  G+T F+Q +
Sbjct: 79  LGVPYELGSGGTTIRIPEDKVYDVRLEMAKAGLPKSTDGVGFEIFDNQSLMGMTDFVQRM 138

Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE 189
              RAL+GE+AR+++SI+ +  ARVH+V+P    F       TASV++   +       +
Sbjct: 139 NYQRALQGELARSVESIAAVEKARVHLVLPKKSMFAAEERTATASVVMELTHALNKTQID 198

Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME----RNILGKSLSIVQAIQHEIEMNI 245
            I H+VA+AV  L    VT+LD  G L+   + E    R     +L++    + +IE  +
Sbjct: 199 GITHMVASAVEGLSQDQVTLLDQKGNLIAGGKTEDLDGRMPTDDALALQSMKEKKIEERV 258

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS--ETSQPE 303
              L   LG D     + AEL++D +Q +E  YDPD +V  S     ++ R    T    
Sbjct: 259 QSLLDRVLGPDKSIIRITAELDLDKKQRQEESYDPDGQVPLSTNTVTESSRGMFGTGGVP 318

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
             +  + N   V+        S +  D + EQ N+ +  K          + RLS+AV++
Sbjct: 319 GVIPNDPNQTAVAGGT----GSQQTRDVEREQVNFLVPKKVTTVQEAVGDIRRLSVAVMI 374

Query: 364 NKGRLTEVLGRSA--DQGKIDSY-------LAEINKIVSAATGINSRRGDTITITSMDF- 413
           + G    V  +    D  K   Y       + ++ +I+    G +++RGD+I +T+  F 
Sbjct: 375 D-GTYEAVKDKDGNIDPEKPAVYTPRSTEEMEQLKRIIMQTVGFDAKRGDSIEVTNTAFE 433

Query: 414 -LENQL-FNSGTVQVSFMDILSRHFATVINA--LVFLVGTLLVTFL 455
            L   L   S  +   F   ++++ A  + A  LVF V   LVT L
Sbjct: 434 PLPPPLDVKSPWLSREFQLEMAKYGAIALLAFLLVFFVMRPLVTKL 479


>gi|896313|gb|AAB06801.1| flagellar MS ring [Pseudomonas aeruginosa]
          Length = 599

 Score =  153 bits (386), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 120/463 (25%), Positives = 217/463 (46%), Gaps = 50/463 (10%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92
           + +  A   +   P Y  LY  L   D NR+  AL+ A+I +++  N  ++ V +  +G+
Sbjct: 52  VAIGFAVVLWSQQPDYKPLYGSLNGVDANRVVEALTAADIPYKVEPNSGALLVKADDLGR 111

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
           AR+ +A+ G+  + +N G+E+ DK  + G + FM+     R LEGE+ART+ S++ + AA
Sbjct: 112 ARMKVASAGVAPTDNNVGFEILDKEQALGTSQFMEATNYRRGLEGELARTVSSLNNVKAA 171

Query: 153 RVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDV 207
           RVH+ +P    F +   +P+ASV++     R++ PS      AI +LVA +VP LD   V
Sbjct: 172 RVHLAIPKSSVFVRDDRKPSASVLVELYPGRSLEPS---QVMAIVNLVATSVPELDKSQV 228

Query: 208 TVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE 265
           TV+D  G LL+  +   E  +  K     + ++  +   ++  L   L     ++ V A+
Sbjct: 229 TVVDQKGNLLSDQQELSELTMADKQFDFTRRMEGLLTQRVHNILQPVLDNGRNKTEVSAD 288

Query: 266 LNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPH----------- 314
           ++    +    +Y+PD    RS + + + +R  +S P+       N P            
Sbjct: 289 VDFSAVESTSEMYNPDQPALRSEQHNNE-ERQNSSGPQGVPGALSNQPPGPASAPQQATA 347

Query: 315 --------------------VSDRKVPLPR-SLENTDKKEEQS-NYEINTKSIATTHDNY 352
                               + D K   P  +   TDK+++ + NYE++     T     
Sbjct: 348 SAPADYVAPGQPLKDANGQTIIDPKTGKPELAPYPTDKRDQTTRNYELDRSISYTKQQQG 407

Query: 353 KLERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
           +L RLS+AVV+ ++ ++    G  + Q      LA   ++V  + G ++ RGD++++ + 
Sbjct: 408 RLRRLSVAVVLDDQMKVDAKTGEVSHQPWSADELARFTRLVQDSVGYDASRGDSVSVINA 467

Query: 412 DFLENQLFNSGTV----QVSFMDILSRHFATVINALVFLVGTL 450
            F   Q     ++    Q  F DI+ +    V+  LV + G L
Sbjct: 468 PFAPAQAEEIDSIPFYSQPWFWDIV-KQVLGVLFILVLMFGVL 509


>gi|310816845|ref|YP_003964809.1| flagellar M-ring protein FliF, putative [Ketogulonicigenium vulgare
           Y25]
 gi|308755580|gb|ADO43509.1| flagellar M-ring protein FliF, putative [Ketogulonicigenium vulgare
           Y25]
          Length = 500

 Score =  153 bits (386), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 138/459 (30%), Positives = 226/459 (49%), Gaps = 29/459 (6%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           Q L    SG SL R RI+++A+ + + + +   AR  V  P    LY  L+ +    +  
Sbjct: 2   QNLLALWSGFSL-RRRIILVAATLGIFLAVIGLARG-VGRPDMALLYAGLDPAASAEVVA 59

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
           A+ +  + F +   G +I VP++     R+ LA  GLP+  +  GYEL D ++ FG T+ 
Sbjct: 60  AVEQQRLPFEV--RGDAIYVPAASRDLLRMTLAGAGLPAPGAQ-GYELLDNLSGFGTTAQ 116

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV- 184
           M +    RA EGE+ARTI ++ G+ AARVHI  P    F++ G   TA+V +   + S  
Sbjct: 117 MFDAAYWRAKEGELARTILAVPGLQAARVHISPPAARVFQQ-GEPATAAVTVTMASGSAS 175

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN 244
            + A+A R L+AAAVP LD G+V V+D+   L+ A +        +  +    Q E+   
Sbjct: 176 QQQAQAFRSLIAAAVPGLDPGNVAVIDAKAGLIAAPD--------NAQLADTRQDELRNR 227

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           +   L A +G  N    +  E   DT+ I E   DP+ +V  S  +S+ A+RS+ +  + 
Sbjct: 228 VRSLLEARVGAGNAVVELAVETVTDTESIFERRLDPEGRVVVSNDVSETARRSQGNA-DG 286

Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
           +VTV  N+P  +  +     S     +    +NYE++  S         + RL++AV+VN
Sbjct: 287 SVTVASNLPDGAANQE-AGSSSSEDRESRNVTNYELSETSREVLRAPGAVRRLTVAVLVN 345

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424
           +    E   R+ D+      L  + ++V++A G ++ RGD IT+ +M F+   +  +  V
Sbjct: 346 EPTGPEAAPRAPDE------LEALRELVASAVGFDAARGDVITLRAMPFVAPPVLGTEAV 399

Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
                   +R F   +  + F    L+   LGL  LR L
Sbjct: 400 AAP-----ARLF-DPMQLVQFGALALVALILGLFVLRPL 432


>gi|118581826|ref|YP_903076.1| flagellar M-ring protein FliF [Pelobacter propionicus DSM 2379]
 gi|118504536|gb|ABL01019.1| flagellar M-ring protein FliF [Pelobacter propionicus DSM 2379]
          Length = 528

 Score =  153 bits (386), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 127/429 (29%), Positives = 213/429 (49%), Gaps = 35/429 (8%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L +L++ F    +L   + +++A V ++ +  F    F  N   Y  L+  L   D   I
Sbjct: 5   LQRLIEPF---MALSPGKRMLIAGVAILSVAAFAVLIFVANRVDYRPLFTNLSTEDAAEI 61

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L +    ++I+ +G  I VP+ +V + R+ LA++GLP      G+E+FD+ N FG+T
Sbjct: 62  VKKLKDNKTPYQITADGKGIMVPADLVYEQRLALASEGLPQGG-GVGFEIFDRKN-FGMT 119

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
            F+Q+I   RAL+GE++RTI  ++G+  AR+H+V+P+   F++     TAS++++  +  
Sbjct: 120 EFVQKINYQRALQGELSRTISQLNGVEQARIHLVIPEKSLFKENEKPSTASIVLKMKSGR 179

Query: 184 VYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEI 241
             +  E   I HLVA+++  ++   VTVLDS GK+L     + +   K+ S++Q  Q   
Sbjct: 180 SLRQNEVQGIVHLVASSIEGMEADQVTVLDSRGKVLNKGGGDPDPTSKATSVMQETQRIY 239

Query: 242 EMNINKALAAFLG--VDNFRSAVVAELNMDTQQIR--EIVYDPDSKVERSIRLSKDAQRS 297
           E N+ + + + L   V + R+        D +Q+   E  +DP+S   RS       QRS
Sbjct: 240 EKNVEERIQSMLDPVVGSGRAIARVSALFDFKQVERLEEKFDPESIAVRS------EQRS 293

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPR-------SLENTDKKEEQSNYEINTKSIATTHD 350
           E    + A  V  N   V   +  L R             K +E  NYE++  +      
Sbjct: 294 EE---KGATAV--NAAGVPGVQTNLGRTGAGGATQAGGAAKNDETLNYEVSRTTAKIIEP 348

Query: 351 NYKLERLSIAVVVN-KGRLTEVL--GRSADQGKIDSYLAEINKI---VSAATGINSRRGD 404
              L RLS+AV+V+ K  L   +  G++A    I     E+ KI   V +A G N+ RGD
Sbjct: 349 VGALSRLSVAVLVDGKYALPTAVKDGQTATPKYIPRSPEELQKIEALVKSAVGFNAERGD 408

Query: 405 TITITSMDF 413
            + I ++ F
Sbjct: 409 QLAIQNIPF 417


>gi|209919360|ref|YP_002293444.1| flagellar MS-ring protein [Escherichia coli SE11]
 gi|293446318|ref|ZP_06662740.1| flagellar M-ring protein FliF [Escherichia coli B088]
 gi|209912619|dbj|BAG77693.1| flagellar hook-basal body MS ring protein FliF [Escherichia coli
           SE11]
 gi|291323148|gb|EFE62576.1| flagellar M-ring protein FliF [Escherichia coli B088]
          Length = 552

 Score =  153 bits (386), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 197/418 (47%), Gaps = 40/418 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPAEKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I +I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IATIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+     +   S+    SE S    P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429


>gi|27355280|dbj|BAC52264.1| fliF [Bradyrhizobium japonicum USDA 110]
          Length = 519

 Score =  153 bits (386), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 115/394 (29%), Positives = 199/394 (50%), Gaps = 13/394 (3%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           +I  +  LV    F+  R  V +P    L+  L V D + I   L    I F + + G+ 
Sbjct: 1   MIAVTAALVGFFAFVIMR--VTTPQMTTLFTDLSVEDSSSIIKDLERQAIQFELRNEGTI 58

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP   V + R+ LA +G        GYE+FDK ++ G TSF+Q I  +RALEGE+ART
Sbjct: 59  IMVPKDKVTRLRMKLA-EGGLPKGGGVGYEVFDKSDALGTTSFVQNINHLRALEGELART 117

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNL 202
           I++I  I AARVH+V+P+   F +    P+AS+++R       +   AIRHLVA+AV  L
Sbjct: 118 IRAIDRIQAARVHLVLPERPLFSREAPEPSASIVVRVRGALEAQQIRAIRHLVASAVNGL 177

Query: 203 DMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
               V+++D  G+LL    A + E+ +  +  +     +  +   +   +++ +G    R
Sbjct: 178 KPQRVSIVDEAGQLLADGAATDPEQALGDERRT---TFEKRMRKQVEDIVSSVVGSGRAR 234

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRK 319
             + A+ + +        +DP+ +V RS +  +++  S T+     VTV   +P   +++
Sbjct: 235 VQLSADFDFNKITQTSDKFDPEGRVLRSTQTREES--SMTADNNGQVTVNNELP--GNQQ 290

Query: 320 VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQG 379
                + + + K EE +NYEI+  +     +  ++ R+S+AV+V+        G  A Q 
Sbjct: 291 NNGVAAKDQSKKTEETNNYEISRTTKTEVTEAGRVNRISVAVLVDGIYSKNDKGELAYQD 350

Query: 380 KIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           +    L  I  +V +A G + +RGD + + ++ F
Sbjct: 351 RTKEQLDRIATLVRSAIGFDQKRGDQVEVVNLRF 384


>gi|238798572|ref|ZP_04642049.1| Flagellar M-ring protein [Yersinia mollaretii ATCC 43969]
 gi|238717592|gb|EEQ09431.1| Flagellar M-ring protein [Yersinia mollaretii ATCC 43969]
          Length = 572

 Score =  153 bits (386), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 140/549 (25%), Positives = 253/549 (46%), Gaps = 67/549 (12%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  SP Y  LY  L   D   I   L++ NI +R +DNG ++ +P+  V + R+ LA Q
Sbjct: 46  LWAKSPDYRVLYSNLSDRDGGEIVTQLTQLNIPYRFADNGGALLIPAEKVHETRLRLAQQ 105

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI ++  ++  RVH+ MP 
Sbjct: 106 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIGTLGPVLNVRVHLAMPK 163

Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
              F +    PTASV + A+ P          AI ++V+++V  L  G+VTV+D TG+LL
Sbjct: 164 PSLFVREQKSPTASVTL-ALQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLL 222

Query: 218 T-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           T ++   R++    L     +++  +  I   LA  +G  N  + V A+++  +++  + 
Sbjct: 223 TQSDSAGRDLNAAQLKFTNEVENRFQRRIETILAPMVGNGNVHAQVTAQVDFASREQTDE 282

Query: 277 VYDPDSKVERSIRLSKDAQRSE------TSQPESAVTVEQNMPHVSDRKVPLP------- 323
            Y P+    +    S+    SE            A++ + +   V+  +VP P       
Sbjct: 283 EYKPNQAANQGAVRSQQTSNSEQLGGSNVGGVPGALSNQPSATPVAPIEVPQPAPAAGAA 342

Query: 324 ---------------------RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
                                 +  +  + ++ +N+E++     T      ++RLS+AVV
Sbjct: 343 GATANNANAANRPAATTAARSTATSSNSRHDQTTNFEVDRTIRHTQQQAGIVQRLSVAVV 402

Query: 363 VNKG--RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           VN G  +  + +  S DQ      LA++  +   A G ++ RGDT+ + +  F  N   +
Sbjct: 403 VNYGSDKAGKPVALSKDQ------LAQVESLTREAMGFSTDRGDTLNVVNTPF--NATDD 454

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
                + F    S  F  ++NA  +L+  LLV ++    L R        K ++  K+  
Sbjct: 455 GSGSSLPFWQQQS-FFDQLLNAGRYLL-ILLVAWILWRKLVRPM----ITKKQIADKAAA 508

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
           S   ++S V T         +  S +++    +N Q R+++ V  Q   R+  + + +  
Sbjct: 509 S---VNSMVQTAQTAE---TVKQSKEELALRKKN-QQRVSAEVQAQ---RIRELADKDPR 558

Query: 541 RFAKILRKW 549
             A ++R+W
Sbjct: 559 IVALVIRQW 567


>gi|157145268|ref|YP_001452587.1| flagellar MS-ring protein [Citrobacter koseri ATCC BAA-895]
 gi|157082473|gb|ABV12151.1| hypothetical protein CKO_01005 [Citrobacter koseri ATCC BAA-895]
          Length = 558

 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 122/426 (28%), Positives = 203/426 (47%), Gaps = 54/426 (12%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V I++ M    +  +P Y  L+  L   D   I   L++ NI +R ++   +
Sbjct: 28  LIVAGSAAVAIIVAMV--LWAKAPDYRTLFSNLSDQDGGAIVTQLTQMNIPYRFTEGSGA 85

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE+ART
Sbjct: 86  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELART 143

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAA 197
           I+++  +  ARVH+ MP    F +    P+ASV +     RA++        A+ HLV++
Sbjct: 144 IETLGPVKRARVHLAMPKPSLFVREQKSPSASVTVNLEPGRALDEG---QISAVVHLVSS 200

Query: 198 AVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVD 256
           AV  L  G+VT++D  G LLT +N   R++    L     ++  I+  I   L+  +G  
Sbjct: 201 AVAGLPPGNVTLVDQGGHLLTQSNTSSRDLNDAQLKYASDVEGRIQRRIESILSPIVGNG 260

Query: 257 NFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE--------------TSQP 302
           N  + V A+L+   ++  E  Y P+    +++  S+    SE              ++QP
Sbjct: 261 NVHAQVTAQLDFANKEQTEEQYRPNGDASQAVLRSRQLNESEQIGSGYPGGVPGALSNQP 320

Query: 303 ESAVTVEQNMPHVSDRKVP-----------LPRSLENTDKKEEQSNYEINTKSIATTHDN 351
             A     + P  + +              +PR   NT ++ E SNYE++     T  + 
Sbjct: 321 APANAAPISTPPANQQNAQNTQTTNNTNSNVPR---NT-QRNETSNYEVDRTIRHTKLNV 376

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGK----IDSYLAEINKIVSAATGINSRRGDTIT 407
             ++RLS+AVVVN         R+   GK        + +I  +   A G + +RGDT+ 
Sbjct: 377 GDVQRLSVAVVVNY--------RALPDGKPLPLTTEQMKQIEDLTREAMGFSDKRGDTLN 428

Query: 408 ITSMDF 413
           + +  F
Sbjct: 429 VVNSPF 434


>gi|331647532|ref|ZP_08348624.1| flagellar M-ring protein FliF [Escherichia coli M605]
 gi|330911744|gb|EGH40254.1| flagellar M-ring protein FliF [Escherichia coli AA86]
 gi|331043256|gb|EGI15394.1| flagellar M-ring protein FliF [Escherichia coli M605]
          Length = 552

 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 198/418 (47%), Gaps = 40/418 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIVAGSAAVAVMVALI--LWAKAPDYRILFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+     +   S+    SE S    P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEALTREAMGFSEKRGDSLNVVNSPF 429


>gi|193066388|ref|ZP_03047436.1| flagellar M-ring protein FliF [Escherichia coli E22]
 gi|194429948|ref|ZP_03062458.1| flagellar M-ring protein FliF [Escherichia coli B171]
 gi|301327725|ref|ZP_07220930.1| flagellar M-ring protein FliF [Escherichia coli MS 78-1]
 gi|192925973|gb|EDV80619.1| flagellar M-ring protein FliF [Escherichia coli E22]
 gi|194412037|gb|EDX28349.1| flagellar M-ring protein FliF [Escherichia coli B171]
 gi|300845725|gb|EFK73485.1| flagellar M-ring protein FliF [Escherichia coli MS 78-1]
 gi|320198628|gb|EFW73228.1| Flagellar M-ring protein FliF [Escherichia coli EC4100B]
 gi|323158583|gb|EFZ44597.1| flagellar M-ring protein FliF [Escherichia coli E128010]
 gi|323183922|gb|EFZ69309.1| flagellar M-ring protein FliF [Escherichia coli 1357]
          Length = 552

 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 197/418 (47%), Gaps = 40/418 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I +I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IATIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+     +   S+    SE S    P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429


>gi|319790420|ref|YP_004152053.1| flagellar M-ring protein FliF [Thermovibrio ammonificans HB-1]
 gi|317114922|gb|ADU97412.1| flagellar M-ring protein FliF [Thermovibrio ammonificans HB-1]
          Length = 532

 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 126/437 (28%), Positives = 222/437 (50%), Gaps = 41/437 (9%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           D+L  F +   +  R  +L+L ++ LV  +  +  R + N   Y  LY  L   D   I 
Sbjct: 8   DKLTAFLREKAN-PRNIVLVLGALTLVVFLSLVLVRSYSNQ-EYAVLYTHLSPDDAGEIL 65

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L +  I +++  +GS I VP   V + R+ LAA+GLP      G+E+FDK    G+T 
Sbjct: 66  TVLQQEKIPYKVEGDGSIILVPKDKVYEVRLQLAAKGLPHGKV-VGFEIFDK-PKLGITQ 123

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RA 179
           F Q +  +RALEGE+ RTI+ +  + +A+V+I +P    F +    P ASV++     R 
Sbjct: 124 FQQNVEYLRALEGELERTIEQLDAVRSAKVNIALPKDSIFVRPEQEPKASVLVDLWPGRD 183

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQ 235
           + P   K   AI  LV+ AVP L   +VTV+D+ G++L+    ++     +  K L I +
Sbjct: 184 LTPEQVK---AIIFLVSHAVPGLKPENVTVVDTRGRVLSDLVESDNSTYAVSSKELKIKR 240

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI--REIVYDPDSKVERSIRLSKD 293
            ++ +IE  +   L+  LG    +  V A + ++T ++  ++ +YDPD     S R  ++
Sbjct: 241 QLERDIERKVESMLSQVLG--GGKVVVRASVEVETGKVETQKEIYDPDMTAVVSQRKVQE 298

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
            + +   QP+ A     N+P V +   P  + ++  +KK+  +NY+++     +    ++
Sbjct: 299 KEVATQKQPQGAPGTTTNVPPVVNFG-PNAKVVQK-EKKDVTTNYDVSKTIERSVTPVFR 356

Query: 354 LERLSIAVVVNKGRLTEVLG-----------RSADQGKIDSYLAEINKIVSAATGINSRR 402
           ++R+++ V+V+ GR  +V G           RS  +  I +Y     +IV +  G + +R
Sbjct: 357 IKRITVGVLVD-GRYEKVKGPKGTVEYKFVPRSPQE--IKTY----EEIVKSVIGYDPKR 409

Query: 403 GDTITITSMDFLENQLF 419
           GD +T+ S+ F E QL 
Sbjct: 410 GDRVTVASVPF-ETQLL 425


>gi|260844337|ref|YP_003222115.1| flagellar basal-body MS-ring and collar protein FliF [Escherichia
           coli O103:H2 str. 12009]
 gi|257759484|dbj|BAI30981.1| flagellar basal-body MS-ring and collar protein FliF [Escherichia
           coli O103:H2 str. 12009]
          Length = 552

 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 197/418 (47%), Gaps = 40/418 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I +I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IATIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+     +   S+    SE S    P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMMQIEDLTREAMGFSEKRGDSLNVVNSPF 429


>gi|322421735|ref|YP_004200958.1| flagellar M-ring protein FliF [Geobacter sp. M18]
 gi|320128122|gb|ADW15682.1| flagellar M-ring protein FliF [Geobacter sp. M18]
          Length = 524

 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 117/391 (29%), Positives = 188/391 (48%), Gaps = 33/391 (8%)

Query: 44  NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP 103
           N   Y  L+  L   D   I   L E  + ++I+ +G +I VPS  V   R+ +A+ GLP
Sbjct: 42  NKTDYRPLFANLTSEDAGEIVKKLKEQKVPYQIAADGKAIMVPSDKVYDLRLSMASDGLP 101

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
                 GYE+FD+ N FG+T F+Q++   RAL+GE++RTI  I+G+ +ARVH+ +P+   
Sbjct: 102 QGG-GIGYEIFDRKN-FGMTEFVQKLNYQRALQGELSRTISQIAGVESARVHLAIPEKTL 159

Query: 164 FRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN- 220
           F+      TASV+++  +  + + AE   I HLVA+++  +D   VTVLDS GK+L+ N 
Sbjct: 160 FKDAEKPATASVVLKMKSNRMLREAEVQGIVHLVASSIEGMDPEQVTVLDSRGKMLSGNT 219

Query: 221 --EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
             +    + G      +  +   E  +   L   +G     + V A  +    +  E  Y
Sbjct: 220 PSDTASKLTGSRQETQRNFEKTQEEKLQTLLDRVVGSGKCVARVSAAFDFKQVEKYEERY 279

Query: 279 DPDSKVERSIRLSKDAQRSE-----TSQPESAVTVEQNMPHVSDRKVP-LPRSLENTDKK 332
           DP+S   RS       QRSE     T+       V+ N+     R  P  P       K 
Sbjct: 280 DPESAAVRS------EQRSEEKGGVTATASGVPGVQSNL----GRSAPGAPGQTGGGSKT 329

Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY-------L 385
           +E  NYE++  +         L ++S+AV+V+ G+    L   A  G    Y       +
Sbjct: 330 DETLNYEVSRSTARIIEPVGALSKVSVAVLVD-GKYD--LPAGAKPGATPKYQPRTPDEM 386

Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLEN 416
            +I  +V +A G ++ RGD +T+ ++ F E 
Sbjct: 387 QKIEALVKSAVGFSAERGDQVTVANIPFQET 417


>gi|195952552|ref|YP_002120842.1| flagellar M-ring protein FliF [Hydrogenobaculum sp. Y04AAS1]
 gi|195932164|gb|ACG56864.1| flagellar M-ring protein FliF [Hydrogenobaculum sp. Y04AAS1]
          Length = 500

 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 121/417 (29%), Positives = 212/417 (50%), Gaps = 31/417 (7%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           IL+ L + F++   L +T+ +I+ S+ +V  +L     F  +  HY  LY  L   D+  
Sbjct: 6   ILNNLKERFQA---LNKTQQIIVLSIPVVLALLTGLIFFLTSRVHYAVLYGDLNNRDMAA 62

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I+  L + N+ ++I+ +G +I VP     + R+ LAA GLP+     G++L +K+   G+
Sbjct: 63  IAEQLEKDNVKYKITQDGRTILVPKQEARQLRLKLAAMGLPTKGY-PGFKLLNKM-PLGM 120

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T FMQ +   RALE E++ TI     I  A+V++ +P    F     +P+ASV I  + P
Sbjct: 121 TDFMQHVEYQRALEEELSNTILGFRNIEKAKVNLAIPKPSIFITQSQKPSASVFIE-LKP 179

Query: 183 S---VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAI 237
                 +   AIR+LVAA+VP+L    VTV+DS G  LT   N     +  + L +   +
Sbjct: 180 GASITRRQVIAIRNLVAASVPDLTPNRVTVVDSNGVDLTEELNNPSSYLTNEQLRVKTDL 239

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           ++ I  ++ + L   LG +N R AV  E +    + +   Y+P++    +I   +  Q +
Sbjct: 240 ENSITKHLEQVLGQALGYNNVRVAVDVEPDFSQVETKSKNYNPNTT---AIVSQQKKQET 296

Query: 298 ETSQPESAVT-VEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
            T    S V     N+P +S  +   P +   + KKE  +NY+++ +         +++R
Sbjct: 297 TTGTSVSGVPGTASNIPPMSGLR---PNANFQSTKKEVTTNYDVSVEKTHVVDKTIRIKR 353

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           +S+ V+VN           AD   ++  L  I ++V AA G++ +RGDT+++ ++ F
Sbjct: 354 MSVGVIVN-----------ADLKNVN--LNSIRQLVIAAAGVDPKRGDTVSVIAVPF 397


>gi|300904828|ref|ZP_07122654.1| flagellar M-ring protein FliF [Escherichia coli MS 84-1]
 gi|301305281|ref|ZP_07211378.1| flagellar M-ring protein FliF [Escherichia coli MS 124-1]
 gi|300403255|gb|EFJ86793.1| flagellar M-ring protein FliF [Escherichia coli MS 84-1]
 gi|300839487|gb|EFK67247.1| flagellar M-ring protein FliF [Escherichia coli MS 124-1]
 gi|315257230|gb|EFU37198.1| flagellar M-ring protein FliF [Escherichia coli MS 85-1]
          Length = 552

 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 117/418 (27%), Positives = 197/418 (47%), Gaps = 40/418 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+     V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIVTGSAAVAVMVALI--LWAKTPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+     +   S+    SE S    P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEALTREAMGFSEKRGDSLNVVNSPF 429


>gi|260598447|ref|YP_003211018.1| flagellar MS-ring protein [Cronobacter turicensis z3032]
 gi|260217624|emb|CBA31913.1| Flagellar M-ring protein [Cronobacter turicensis z3032]
          Length = 571

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 119/413 (28%), Positives = 196/413 (47%), Gaps = 50/413 (12%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +   P Y  LY  L   D   I   L++ NI +  +DNG+SI VP+  V   R+ LA QG
Sbjct: 46  WAKQPEYRVLYSNLSDQDGGAIVTQLTQMNIPYNFADNGASIMVPAEKVYDLRLRLAQQG 105

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP  
Sbjct: 106 LPKGGA-VGFELMDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPKP 163

Query: 162 GSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
             F +    P+ASV + ++ P          A+ H+V++AV  L  G+VT++D  G+LLT
Sbjct: 164 SLFVREQKSPSASVTL-SLQPGRTLDDGQVAAVVHMVSSAVAGLPPGNVTLVDQAGRLLT 222

Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            +    R++    L     ++  I+  I   LA  +G  N  + V A+++   ++  E  
Sbjct: 223 QSGTGARDLNDAQLKYASDVEGRIQRRIESILAPIVGSGNVHAQVTAQIDFSNKEQTEEQ 282

Query: 278 Y----DPDSKVERSIRLSKDAQRSE----------TSQPESAVTVE-------------- 309
           Y    DP     RS +L+ + Q             ++QP  A +                
Sbjct: 283 YRPNSDPSQMAVRSRQLNTNDQVGAGNPGGVPGALSNQPAPANSAPIDAPAGQNANGQNA 342

Query: 310 -------QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
                  QN             S  ++ +++E +NYE++     T  +   ++RLS+AVV
Sbjct: 343 NGQNANGQNAQRTQSTSTTGASSGPHSSQRDETTNYEVDRTIRHTKMNVGDVQRLSVAVV 402

Query: 363 VNKGRL--TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           VN  +L   + L  +ADQ      L +I  +   A G + +RGDT+ + +  F
Sbjct: 403 VNYRQLGNGKPLALTADQ------LKQIEDLTREAMGYSDKRGDTLNVVNSPF 449


>gi|256112170|ref|ZP_05453091.1| flagellar MS-ring protein [Brucella melitensis bv. 3 str. Ether]
 gi|256261971|ref|ZP_05464503.1| flagellar M-ring protein FliF [Brucella melitensis bv. 2 str. 63/9]
 gi|265993596|ref|ZP_06106153.1| flagellar M-ring protein FliF [Brucella melitensis bv. 3 str.
           Ether]
 gi|262764466|gb|EEZ10498.1| flagellar M-ring protein FliF [Brucella melitensis bv. 3 str.
           Ether]
 gi|263091455|gb|EEZ15991.1| flagellar M-ring protein FliF [Brucella melitensis bv. 2 str. 63/9]
 gi|326411310|gb|ADZ68374.1| flagellar MS-ring protein [Brucella melitensis M28]
 gi|326554599|gb|ADZ89238.1| flagellar MS-ring protein [Brucella melitensis M5-90]
          Length = 333

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/315 (33%), Positives = 175/315 (55%), Gaps = 18/315 (5%)

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  ++ +
Sbjct: 4   SIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNNRND 63

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
           +A  VEQN+P    +      S E TD++EE +NYE+N+ +++T  D Y ++RLSIAVV+
Sbjct: 64  NATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSMTVSTVSDGYSIKRLSIAVVI 123

Query: 364 NKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           ++ RL +  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL+    +  
Sbjct: 124 DQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGADME 183

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA-------KKGEVG 475
            V   + D L R   +  NAL  L    L+ + GL  L R  N+  A       + GEV 
Sbjct: 184 PVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAGEVA 243

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS-RNLQSRINSYVSKQSDLRLLHM 534
                +P  I  A + G      I   ++  D    S  +L+ R+       + LRL  M
Sbjct: 244 -----TPNFIGGAESVGEGVQAVIGGPAAYADQMKTSLSDLRQRMR----MPAKLRLEQM 294

Query: 535 IEINEERFAKILRKW 549
           IE++EER A +L++W
Sbjct: 295 IEMDEERVAAVLKQW 309


>gi|194439576|ref|ZP_03071649.1| flagellar M-ring protein FliF [Escherichia coli 101-1]
 gi|194421485|gb|EDX37499.1| flagellar M-ring protein FliF [Escherichia coli 101-1]
 gi|323972762|gb|EGB67962.1| flagellar M-ring protein FliF [Escherichia coli TA007]
          Length = 552

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 117/418 (27%), Positives = 197/418 (47%), Gaps = 40/418 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+     V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIVTGSAAVAVMVALI--LWAKTPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+     +   S+    SE S    P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429


>gi|331657984|ref|ZP_08358946.1| flagellar M-ring protein FliF [Escherichia coli TA206]
 gi|331056232|gb|EGI28241.1| flagellar M-ring protein FliF [Escherichia coli TA206]
          Length = 552

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 117/418 (27%), Positives = 197/418 (47%), Gaps = 40/418 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+     V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIVTGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+     +   S+    SE S    P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEALTREAMGFSEKRGDSLNVVNSPF 429


>gi|315296472|gb|EFU55769.1| flagellar M-ring protein FliF [Escherichia coli MS 16-3]
          Length = 552

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 117/418 (27%), Positives = 197/418 (47%), Gaps = 40/418 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ L  QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLTQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRTLDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+     +   S+    SE S    P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEALTREAMGFSEKRGDSLNVVNSPF 429


>gi|324013493|gb|EGB82712.1| flagellar M-ring protein FliF [Escherichia coli MS 60-1]
          Length = 552

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 124/442 (28%), Positives = 207/442 (46%), Gaps = 47/442 (10%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +M+ +    +  +P Y  L+  +   D   I   L++ NI +R S+   +
Sbjct: 25  LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNISDQDGGAIVSQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+     +   S+    SE S    P        N P  +
Sbjct: 261 AQVSAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPTNQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F  
Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEALTREAMGFSEKRGDSLNVVNSPF-- 429

Query: 416 NQLFNSGTV-----QVSFMDIL 432
           N    SG       Q +F+D L
Sbjct: 430 NSSDESGGALPFWQQQAFIDQL 451


>gi|332343664|gb|AEE56998.1| flagellar M-ring protein FliF [Escherichia coli UMNK88]
          Length = 552

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 117/418 (27%), Positives = 197/418 (47%), Gaps = 40/418 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+     V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIVTGSAAVAVMVALI--LWAKTPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+     +   S+    SE S    P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429


>gi|307138605|ref|ZP_07497961.1| flagellar MS-ring protein [Escherichia coli H736]
 gi|331642559|ref|ZP_08343694.1| flagellar M-ring protein FliF [Escherichia coli H736]
 gi|331039357|gb|EGI11577.1| flagellar M-ring protein FliF [Escherichia coli H736]
          Length = 552

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 117/418 (27%), Positives = 197/418 (47%), Gaps = 40/418 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+     V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIVTGSAAVAVMVALI--LWAKTPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+     +   S+    SE S    P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEALAREAMGFSEKRGDSLNVVNSPF 429


>gi|88813200|ref|ZP_01128440.1| flagellar M-ring protein [Nitrococcus mobilis Nb-231]
 gi|88789522|gb|EAR20649.1| flagellar M-ring protein [Nitrococcus mobilis Nb-231]
          Length = 580

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 120/402 (29%), Positives = 194/402 (48%), Gaps = 34/402 (8%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  LY  L   D + ++ AL  ANI  R+  N  +I VP+  + +AR+ LA Q
Sbjct: 62  MWAQEPTYRALYANLPTQDASAVADALQTANIPHRLDTNSGAILVPAQRLSEARLKLAGQ 121

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP  +   G+E   +   FG + FM+     RALE E+ARTI ++  +  +RVH+ +P+
Sbjct: 122 GLP-HTGGVGFESLRQEQGFGTSQFMETARFQRALETELARTIDALDPVARSRVHLAIPE 180

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+A+V I      V  S +  AI HLVA+AVP +    VT++D  G+LL+
Sbjct: 181 RSVFVRDRKTPSAAVSIGLYPGRVLSSGQVLAIAHLVASAVPAMTASAVTIVDQRGRLLS 240

Query: 219 --ANEMERNILGKSLSIVQ-AIQHEIE----MNINKALAAFLGVDNFRSAVVAELNMDTQ 271
             ANE E    G + ++ Q A +H +E      I   L   +G  + ++ V A ++   Q
Sbjct: 241 RVANEGE----GLNATVQQLAFRHRVEEAYARRIEDLLTPIVGAGHVKAQVNARVDFSAQ 296

Query: 272 QIREIVYDPDSKVERSIRLSKD-AQRSE---------TSQPESAVTVEQNMPHVSDRKVP 321
           +  E +Y P+  V RS +  K+  +RS+         ++QP    T++   P  S + V 
Sbjct: 297 ERTEELYQPEQSVVRSEQSMKERTERSQKAIGVPGALSNQPPGTGTLQPAQPGKSGKPVD 356

Query: 322 LPRSLENTDKKE-------EQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL---TEV 371
              +   T   E          NYEI+            + RLS+AV++++  +   T+ 
Sbjct: 357 QQEAANQTSAPELVDSRISHTRNYEISKTIHHVRTPRGAITRLSVAVLLDRPAIAAKTKD 416

Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
             ++  Q      LAE+ ++V    G ++ RGDTI + S  F
Sbjct: 417 KTQAPPQVDPQVELAELTELVKQVVGFDADRGDTINLISSPF 458


>gi|256022404|ref|ZP_05436269.1| flagellar MS-ring protein [Escherichia sp. 4_1_40B]
 gi|301029395|ref|ZP_07192489.1| flagellar M-ring protein FliF [Escherichia coli MS 196-1]
 gi|299877699|gb|EFI85910.1| flagellar M-ring protein FliF [Escherichia coli MS 196-1]
          Length = 552

 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 117/418 (27%), Positives = 197/418 (47%), Gaps = 40/418 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+     V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIVTGSAAVAVMVALI--LWAKTPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+     +   S+    SE S    P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEALTREAMGFSEKRGDSLNVVNSPF 429


>gi|224373126|ref|YP_002607498.1| flagellar MS-ring protein [Nautilia profundicola AmH]
 gi|223589285|gb|ACM93021.1| flagellar M-ring protein FliF [Nautilia profundicola AmH]
          Length = 561

 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 137/440 (31%), Positives = 225/440 (51%), Gaps = 35/440 (7%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVI-LVPIMLFMAARFFVNSPH----YDNLYVKLEV 57
           +  Q++ F K+     R +I+I+++++ LV I+ F+   F   S      Y  L+  L  
Sbjct: 6   LFKQIIAFTKNLNK--RQKIVIISAIVALVAIISFLVV-FNTTSSKTKTGYAILFDNLSS 62

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
            D   I   L +  I + I ++G  I VP  +V K R+ +AAQGLP SS   G+ELFDK 
Sbjct: 63  KDAALIVQYLDKKQIPYVIPEDGV-IEVPKDVVQKIRLDVAAQGLPKSSK-VGFELFDK- 119

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
           NSFG+T F Q++  +RALEGE+ RTI+S+  + +A V+I +P    F +    PTASV+I
Sbjct: 120 NSFGITDFEQKVKYLRALEGELGRTIESLDAVESATVNIAIPKDSVFVEKQTPPTASVVI 179

Query: 178 RAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERN--ILGKSL 231
           + + P++    K  + I++LVAAAVP +   +V ++D  G LL  N E+ +N  +L   +
Sbjct: 180 K-LKPNMVLTPKQIQGIKYLVAAAVPKMKPENVKIIDQYGNLLGENDELTQNNELLKAEI 238

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ----QIREIVYDPDSKVERS 287
              + ++  +E  I   LA  +G  N    VVA++N+D      + +  +Y PD+     
Sbjct: 239 IYKKRMEKALEDKIVSILAPVIGGKN---KVVAKVNLDIDFSQVKSKSTIYSPDN----V 291

Query: 288 IRLSKDAQRSETS-QPESAVTVEQNMPHVSDRKVPLPRSLENTD---KKEEQSNYEINTK 343
           +R  +  + S T  +P+    V   + +V    V   +S E  D   K +  +NYEI+T 
Sbjct: 292 VRSEQTLEESRTGYKPKEVGGVPGAVSNVGP--VQGTKSNEVKDKYTKSQTTTNYEISTT 349

Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403
                    K++R++ AVVV+     +  G+          L  I  +V    G + +RG
Sbjct: 350 VKDVKEPLAKIKRITAAVVVDGHYKEDKDGKKEFVPLTKLELTNIENLVKNTIGYDPKRG 409

Query: 404 DTITITSMDFLENQLFNSGT 423
           D+++++S  F  N   N  T
Sbjct: 410 DSVSVSSFQFTGNSANNEPT 429


>gi|331683490|ref|ZP_08384091.1| flagellar M-ring protein FliF [Escherichia coli H299]
 gi|331079705|gb|EGI50902.1| flagellar M-ring protein FliF [Escherichia coli H299]
          Length = 552

 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 117/418 (27%), Positives = 197/418 (47%), Gaps = 40/418 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+     V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIVTGSAAVAVMVALI--LWAKTPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDKGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+     +   S+    SE S    P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEALTREAMGFSEKRGDSLNVVNSPF 429


>gi|253990094|ref|YP_003041450.1| flagellar MS-ring protein [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253781544|emb|CAQ84707.1| flagellar basal-body m-ring protein [Photorhabdus asymbiotica]
          Length = 567

 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 123/427 (28%), Positives = 205/427 (48%), Gaps = 45/427 (10%)

Query: 26  ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISV 85
           ++ I + I LF+    ++ SP Y  LY  L   D   I   L++ NI +R ++NGS+I +
Sbjct: 35  SAAIAIVIALFL----WLRSPDYRVLYSNLSDKDGGEIVTQLTQLNIPYRFAENGSAIMI 90

Query: 86  PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145
           P+  V + R+ LA QGLP   + +G+EL DK   FG++ F +++   RALEGE++RTI+S
Sbjct: 91  PAGQVHETRLRLAQQGLPKGGA-AGFELLDK-EKFGISQFSEQVNYQRALEGELSRTIES 148

Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLD 203
           +  +  ARVH+ +P    F +    P+ASV +  +        +  AI H+V+++V  L 
Sbjct: 149 LGPVQNARVHLALPKPSLFVREQKSPSASVTVGLLQGRTLDEGQINAIVHMVSSSVAGLP 208

Query: 204 MGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAV 262
             +VT++D  G+LLT A+   R++    L  +Q +++  +  I   L   +G  N  + V
Sbjct: 209 PSNVTIVDQAGRLLTQADATGRDLNTSQLKYIQEVENRFQQRIEAILTPVVGRGNVHAQV 268

Query: 263 VAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS--------------QP------ 302
            A+++   ++     Y P+    ++   SK    SE S              QP      
Sbjct: 269 TAQVDFSRREETAEEYKPNQPPNQAAVRSKQLSESEQSGGPLVGGIPGALSNQPSPPPSA 328

Query: 303 --ESAVTVEQNMPHVSDRKVPLPRSLENTDKK----------EEQSNYEINTKSIATTHD 350
             E   T E N    SD+K     S  N++++          +E +NYE++         
Sbjct: 329 PIEKPNTKESNKSDKSDKKT---SSSGNSNERMVNNNRNNRRDETTNYEVDRTIRHVQQQ 385

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
              +ERLS+AVVVN     E       Q      LA+I  +   A G +  RGD++ + +
Sbjct: 386 AGGVERLSVAVVVNY-VTVEGKNGPETQALTPEQLAKIEALTREAMGFSKERGDSLNVVN 444

Query: 411 MDFLENQ 417
             F E++
Sbjct: 445 TPFTESK 451


>gi|270262379|ref|ZP_06190651.1| flagellar M-ring protein FliF [Serratia odorifera 4Rx13]
 gi|270044255|gb|EFA17347.1| flagellar M-ring protein FliF [Serratia odorifera 4Rx13]
          Length = 567

 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 115/414 (27%), Positives = 202/414 (48%), Gaps = 44/414 (10%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  SP Y  LY  L   D   I   L++ NI +R ++NG+++ +P+  V + R+ LA Q
Sbjct: 46  LWAKSPDYRVLYSNLNDRDGGAIVTQLTQMNIPYRFAENGAALMIPADKVHETRLRLAQQ 105

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F ++I   RALEGE++RTI+S+  +  ARVH+ +P 
Sbjct: 106 GLPKGGA-VGFELLDQ-EKFGISQFSEQINYQRALEGELSRTIESLGPVQNARVHLALPK 163

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    P+ASV +     RA++        AI ++V+++V  L  G+VTV+D  G+
Sbjct: 164 PSLFVREQKSPSASVTLTLQPGRALDDG---QINAIVYMVSSSVAGLPPGNVTVVDQAGR 220

Query: 216 LLTANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT ++   R++    L     +++  +  I   LA  +G  N  + V A+++  T++  
Sbjct: 221 LLTQSDGAGRDLNAAQLKYANEVENRYQRRIEAILAPMVGNANVHAQVTAQIDFATREQT 280

Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQPESAVTVE----------- 309
           +  Y P+    ++   S+   +SE              ++QP +  T             
Sbjct: 281 DEEYQPNQLPNQAAVRSQQMSQSEQLGGPQVGGVPGALSNQPSAPATAPIETAKTNAAAG 340

Query: 310 ----QNMPH-VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
                  P+  + R      S     +++E +NYE++     T      ++RLS+AVVVN
Sbjct: 341 NNANGAKPNAAATRSTAANGSGPQNTRRDETTNYEVDRTIRHTQQKAGTVQRLSVAVVVN 400

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
             R  +  G+     K    LA+I  +V  + G +S RGDT+ + +  F + ++
Sbjct: 401 Y-RGVDKDGKPLPMSK--EQLAQIESLVRESMGFSSSRGDTLNVVNTPFTDTEV 451


>gi|148546737|ref|YP_001266839.1| flagellar MS-ring protein [Pseudomonas putida F1]
 gi|148510795|gb|ABQ77655.1| flagellar M-ring protein FliF [Pseudomonas putida F1]
          Length = 592

 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 143/571 (25%), Positives = 253/571 (44%), Gaps = 87/571 (15%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92
           + +  A   +   P Y  LY  L   D  ++   L+ A+I + +  N  ++ V +  + +
Sbjct: 50  VAIGFAVVLWSQQPDYRPLYGSLSGMDTKQVMDTLAAADIPYNVEPNSGALLVKADDLSR 109

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
           AR+ LAA G+  S  N G+EL DK    G + FM+     R+LEGE+ART+ S++ + AA
Sbjct: 110 ARLKLAAAGVAPSDGNVGFELLDKEQGLGTSQFMEATRYRRSLEGELARTVSSLNNVKAA 169

Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVL 210
           RVH+ +P    F +   +P+ASV++        ++ +  AI +LVA +VP LD   VTV+
Sbjct: 170 RVHLAIPKSSVFVRDERKPSASVLVELYPGRALEAGQVMAIVNLVATSVPELDKSQVTVV 229

Query: 211 DSTGKLLTANEMERNIL---GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELN 267
           D  G LL+  +++ + L   GK     + ++  +   ++  L   LG D +++ V A+L+
Sbjct: 230 DQKGNLLS-EQIQDSALTQAGKQFDYSRRVESMLTQRVHNILLPVLGNDRYKAEVSADLD 288

Query: 268 MDTQQIREIVYDPDSKVERSIRLSKDAQRSET-----------SQPESAVTVEQ------ 310
               +     ++PD    RS + S D QR+ +           +QP  A +  Q      
Sbjct: 289 FSAVESTSEQFNPDQPALRSEQ-SVDEQRASSQGPQGVPGALSNQPPGAASAPQTTGGAA 347

Query: 311 ---------------NMPHVSDRKVPLPRSLENTDKKEEQS--NYEINTKSIATTHDNYK 353
                          N   + D     P        K +QS  N+E++     T     +
Sbjct: 348 TPAAAIQPGQPLVDANGQQIMDPATGQPMLAPYPSDKRQQSTKNFELDRSISHTRQQQGR 407

Query: 354 LERLSIAVVVN-KGRLTEVLGRS--ADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
           + RLS+AVVV+ + ++    G +  A  G  D  LA   ++V  A G ++ RGD++T+ +
Sbjct: 408 MTRLSVAVVVDDQVKIDPATGDTTRAPWGAED--LARFTRLVQDAVGFDASRGDSVTVIN 465

Query: 411 MDFLENQLFNSGTV----QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
           + F  ++      +    Q  F DI+ +    V+  LV + G L            L+NI
Sbjct: 466 VPFAADRGEEIADIAFYQQPWFWDIV-KQVLGVVFILVLVFGVLRPV---------LNNI 515

Query: 467 DDAKKG-------EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF-SHSRNLQSR 518
               K        E+GG   L           G + ND ++L      +  S S   +++
Sbjct: 516 TGGGKQAAPDSDMELGGMMGLD----------GELANDRVSLGGPTSILLPSPSEGYEAQ 565

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKW 549
           +N+         +  ++  +  R A++++ W
Sbjct: 566 LNA---------IKGLVAEDPGRVAQVVKDW 587


>gi|238788332|ref|ZP_04632126.1| Flagellar M-ring protein [Yersinia frederiksenii ATCC 33641]
 gi|238723578|gb|EEQ15224.1| Flagellar M-ring protein [Yersinia frederiksenii ATCC 33641]
          Length = 569

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 136/546 (24%), Positives = 247/546 (45%), Gaps = 64/546 (11%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  SP Y  LY  L   D   I   L++ NI +R +D+G ++ +P+  V + R+ LA Q
Sbjct: 46  LWAKSPDYRVLYSNLSDRDGGDIVTQLTQLNIPYRFADHGGALLIPADKVHETRLRLAQQ 105

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI ++  ++  RVH+ MP 
Sbjct: 106 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIGTLGPVLNVRVHLAMPK 163

Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
              F +    PTASV + A+ P          AI ++V+++V  L   +VTV+D TG+LL
Sbjct: 164 PSLFVREQKSPTASVTL-ALQPGRALDDGQINAIVYMVSSSVAGLPPANVTVVDQTGRLL 222

Query: 218 T-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           T ++   R++    L     +++  +  I   LA  +G  N  + V A+++  +++  + 
Sbjct: 223 TQSDSAGRDLNAAQLKFTNEVENRFQRRIETILAPMVGSGNVHAQVTAQVDFASREQTDE 282

Query: 277 VYDPDSKVERSIRLSKDAQRSE--------------TSQPESAVTVEQNMPHVSDRKVPL 322
            Y P+    +    S+    SE              ++QP +       +P  +      
Sbjct: 283 EYKPNQAANQGAVRSQQVSSSEQLGGSNVGGVPGALSNQPSATPVAPIEVPQPAAAPGAT 342

Query: 323 ------------PRSLENT-----DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365
                       P +  +T      + ++ +N+E++     T      ++RLS+AVVVN 
Sbjct: 343 GAAANNANAANSPATTRSTATSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVNY 402

Query: 366 G--RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           G  +  + +  + DQ      LA++  +   A G ++ RGDT+ + +  F  N   N+  
Sbjct: 403 GSDKAGKPIALTKDQ------LAQVESLTREAMGFSTDRGDTLNVVNTPF--NATDNASG 454

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
             + F    S  F  ++NA  +L+  L+   L    +R L  I   +  +    S+ +  
Sbjct: 455 NALPFWQQPS-FFDQLLNAGRYLLILLVAWILWRKLVRPL--IAKKQIADKAAASVNNIV 511

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
             + A  T     + +AL   N          Q R+++ V  Q   R+  + + +    A
Sbjct: 512 QTAQATETAKQSKEELALRKKN----------QQRVSAEVQAQ---RIRELADKDPRVVA 558

Query: 544 KILRKW 549
            ++R+W
Sbjct: 559 LVIRQW 564


>gi|26991058|ref|NP_746483.1| flagellar MS-ring protein [Pseudomonas putida KT2440]
 gi|24986091|gb|AAN69947.1|AE016633_5 flagellar basal-body M-ring protein FliF [Pseudomonas putida
           KT2440]
          Length = 592

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 143/571 (25%), Positives = 253/571 (44%), Gaps = 87/571 (15%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92
           + +  A   +   P Y  LY  L   D  ++   L+ A+I + +  N  ++ V +  + +
Sbjct: 50  VAIGFAVVLWSQQPDYRPLYGSLSGMDTKQVMDTLAAADIPYNVEPNSGALLVKADDLSR 109

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
           AR+ LAA G+  S  N G+EL DK    G + FM+     R+LEGE+ART+ S++ + AA
Sbjct: 110 ARLKLAAAGVAPSDGNVGFELLDKEQGLGTSQFMEATRYRRSLEGELARTVSSLNNVKAA 169

Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVL 210
           RVH+ +P    F +   +P+ASV++        ++ +  AI +LVA +VP LD   VTV+
Sbjct: 170 RVHLAIPKSSVFVRDERKPSASVLVELYPGRALEAGQVMAIVNLVATSVPELDKSQVTVV 229

Query: 211 DSTGKLLTANEMERNIL---GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELN 267
           D  G LL+  +++ + L   GK     + ++  +   ++  L   LG D +++ V A+L+
Sbjct: 230 DQKGNLLS-EQIQDSALTQAGKQFDYSRRVESMLTQRVHNILQPVLGNDRYKAEVSADLD 288

Query: 268 MDTQQIREIVYDPDSKVERSIRLSKDAQRSET-----------SQPESAVTVEQ------ 310
               +     ++PD    RS + S D QR+ +           +QP  A +  Q      
Sbjct: 289 FSAVESTSEQFNPDQPALRSEQ-SVDEQRASSQGPQGVPGALSNQPPGAASAPQTTGGAA 347

Query: 311 ---------------NMPHVSDRKVPLPRSLENTDKKEEQS--NYEINTKSIATTHDNYK 353
                          N   + D     P        K +QS  N+E++     T     +
Sbjct: 348 TPAAAIQPGQPLVDANGQQIMDPATGQPMLAPYPSDKRQQSTKNFELDRSISHTRQQQGR 407

Query: 354 LERLSIAVVVN-KGRLTEVLGRS--ADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
           + RLS+AVVV+ + ++    G +  A  G  D  LA   ++V  A G ++ RGD++T+ +
Sbjct: 408 MARLSVAVVVDDQVKIDPATGDTTRAPWGAED--LARFTRLVQDAVGFDASRGDSVTVIN 465

Query: 411 MDFLENQLFNSGTV----QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
           + F  ++      +    Q  F DI+ +    V+  LV + G L            L+NI
Sbjct: 466 VPFAADRGEEIADIAFYQQPWFWDIV-KQVLGVVFILVLVFGVLRPV---------LNNI 515

Query: 467 DDAKKG-------EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF-SHSRNLQSR 518
               K        E+GG   L           G + ND ++L      +  S S   +++
Sbjct: 516 TGGGKQAAPDSDMELGGMMGLD----------GELANDRVSLGGPTSILLPSPSEGYEAQ 565

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKW 549
           +N+         +  ++  +  R A++++ W
Sbjct: 566 LNA---------IKGLVAEDPGRVAQVVKDW 587


>gi|318605263|emb|CBY26761.1| flagellar M-ring protein FliF [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 559

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 134/536 (25%), Positives = 243/536 (45%), Gaps = 54/536 (10%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  SP Y  LY  L   D   I   L++ NI +R +DNG ++ +P+  V + R+ LA Q
Sbjct: 46  LWAKSPDYRVLYSNLNDRDGGDIVTQLTQLNIPYRFADNGGALLIPADKVHETRLRLAQQ 105

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI ++  ++  RVH+ MP 
Sbjct: 106 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIGTLGPVLNVRVHLAMPK 163

Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
              F +    PTASV + A+ P          AI ++V+++V  L   +VTV++ TG+LL
Sbjct: 164 PSLFVREQKSPTASVTL-ALQPGRALDDGQINAIVYMVSSSVAGLPPANVTVVNQTGRLL 222

Query: 218 T-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           T ++   R++    L     +++  +  I   LA  +G  N  + V A+++  +++  + 
Sbjct: 223 TQSDSAGRDLNAAQLKFTNEVENRFQRRIETILAPMVGSGNVHAQVTAQVDFASREQTDE 282

Query: 277 VYDPDSKVERSIRLSKDAQRSE------------------TSQPESAVTVEQNMPHVSDR 318
            Y P+    +    S+    SE                  ++ P + + V Q  P     
Sbjct: 283 EYKPNQAANQGAVRSQQVSTSEQLGGTNVGGVPGALSNQPSATPVAPIEVPQATPAAGAG 342

Query: 319 KVPLPRSLENT---DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG--RLTEVLG 373
                     T    + ++ +N+E++     T      ++RLS+AVVVN G  +  + + 
Sbjct: 343 AAANAAKQTATSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVNYGSDKAGKPIA 402

Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433
            S DQ      LA++  +   A G ++ RGDT+ + +  F  N   ++    + F    S
Sbjct: 403 LSKDQ------LAQVESLTREAMGFSTVRGDTLNVVNTPF--NATDDASGSNLPFWQQPS 454

Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493
             F  ++N   +L+  L+   L    +R L  I   ++ +    S+ +    +    T  
Sbjct: 455 -FFDQLLNIGRYLLILLVAWILWRKLVRPL--IAKKQEADKAAASVNNIVQAAQTTETAK 511

Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549
              + +AL   N          Q R+++ V  Q   R+  + + +    A ++R+W
Sbjct: 512 QTKEELALRKKN----------QQRVSAEVQAQ---RIRELADKDPRIVALVIRQW 554


>gi|238751780|ref|ZP_04613268.1| Flagellar M-ring protein [Yersinia rohdei ATCC 43380]
 gi|238710051|gb|EEQ02281.1| Flagellar M-ring protein [Yersinia rohdei ATCC 43380]
          Length = 564

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 140/543 (25%), Positives = 250/543 (46%), Gaps = 63/543 (11%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  SP Y  LY  L   D   I   L++ NI +R +D+G ++ +P+  V + R+ LA Q
Sbjct: 46  LWAKSPDYRVLYSNLSDRDGGDIVTQLTQLNIPYRFADSGGALLIPADKVHETRLRLAQQ 105

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI ++  ++  RVH+ MP 
Sbjct: 106 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIGTLGPVLNVRVHLAMPK 163

Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
              F +    PTASV + A+ P          AI ++V+++V  L   +VTV+D TG+LL
Sbjct: 164 PSLFVREQKSPTASVTL-ALQPGRALDDGQINAIVYMVSSSVAGLPPANVTVVDQTGRLL 222

Query: 218 T-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           T ++   R++    L     +++  +  I   LA  +G  N  + V A+++  +++  + 
Sbjct: 223 TQSDSAGRDLNAAQLKFTNEVENRFQRRIETILAPMVGSGNVHAQVTAQVDFASREQTDE 282

Query: 277 VYDPDSKVE----RSIRLSKDAQ--------------RSETSQPESAVTVEQNMPHVSDR 318
            Y P+        RS ++S   Q                 ++ P + + V Q     +  
Sbjct: 283 EYKPNQSANQGAVRSAQISTSEQLGGSNVGGVPGALSNQPSATPVAPIEVTQPAGANNAN 342

Query: 319 KVPLPR--------SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG--RL 368
               P         +  +  + ++ +NYE++     T      ++RLS+AVVVN G  + 
Sbjct: 343 AAARPAATPAARSTATSSNSRHDQTTNYEVDRTIRHTQQQAGMVQRLSVAVVVNYGSDKA 402

Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSF 428
            + +  + DQ      LA++  +   A G ++ RGDT+ + +  F  N   ++    + F
Sbjct: 403 GKPIALTKDQ------LAQVESLTREAMGFSTNRGDTLNVVNTPF--NATDDTTGRALPF 454

Query: 429 MDILSRHFATVINALVFLVGTLLVTFLGLHALRR--LHNIDDAKKGEVGGKSILSPPPIS 486
               S  F  ++NA  +L+  LLVT++    L R  L   + A K      S++    ++
Sbjct: 455 WQQQS-FFDQLLNAGRYLL-ILLVTWILWRKLVRPMLAKKNVADKAAASVNSMVQAAQVT 512

Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546
             V       + +AL   N          Q RI++ V  Q   R+  + + +    A ++
Sbjct: 513 ETVKQS---KEELALRKKN----------QQRISAEVQAQ---RIRELADKDPRVVALVI 556

Query: 547 RKW 549
           R+W
Sbjct: 557 RQW 559


>gi|51246508|ref|YP_066392.1| flagellar M-ring protein (FliF) [Desulfotalea psychrophila LSv54]
 gi|50877545|emb|CAG37385.1| related to flagellar M-ring protein (FliF) [Desulfotalea
           psychrophila LSv54]
          Length = 545

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 120/417 (28%), Positives = 211/417 (50%), Gaps = 42/417 (10%)

Query: 20  TRILILASVILVPIMLFMAARFFVNSPHYDN--LYVKLEVSDVNRISVALSEANIDFRIS 77
           +R L L +V+++ +  F  A   + +   D   LY  L  +D   ++  L    I + + 
Sbjct: 41  SRQLSLGAVLILCLAAF--ATIIIQTRTVDQQLLYANLSATDAAAVTEWLKGQKIPYSLK 98

Query: 78  DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137
           D+G S+ + S+ + +AR+ LAA GLPS     G+E+FDK N F LT+++Q+I   RAL+G
Sbjct: 99  DSGKSVWIGSNKIYQARLDLAANGLPSGG-GVGFEVFDKQN-FALTNYVQKINYSRALQG 156

Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLV 195
           E+ARTI S++ I + RVH+ +P+   F+    + TASV++  +       +  E I +LV
Sbjct: 157 ELARTISSLAPIESTRVHLAIPEKRLFKNQQKQATASVILSLVPGKTLSQEQVEGIAYLV 216

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKSLSIVQAIQHEIEMNINKALAAF 252
           A +VP L+  +V VLDS+G +L   E    +R +    L+  + I+ ++EM     L   
Sbjct: 217 AGSVPGLETDNVKVLDSSGVILGDREQNGGDRALSSDMLAFQKEIETQMEMRAQDLLTRT 276

Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNM 312
           +G D+    V A ++    +  E  +D D  V RS +++ ++ R   ++      VE N+
Sbjct: 277 MGADHALVRVTATVDFAKVEKTEEFFDADDPVIRSEQINNESSRG--AEAGGIPGVESNL 334

Query: 313 PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372
                +    P +++N       +NYEI+       +    +++LS++V+V         
Sbjct: 335 QGTQKKSGTGPSAVKNG----RTTNYEISKTISHIVNPVGTVKKLSVSVLV--------- 381

Query: 373 GRSADQGKID------SY-------LAEINKIVSAATGINSRRGDTITITSMDFLEN 416
              AD+ K+D      SY       L  +  +V++A G+ + RGD I + SM F ++
Sbjct: 382 ---ADRQKLDPDTQEPSYTPFSTTELKALENMVASAIGLVATRGDVINVISMPFFQD 435


>gi|205352337|ref|YP_002226138.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205272118|emb|CAR36971.1| flagellar basal-body M-ring protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326627387|gb|EGE33730.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 558

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 128/430 (29%), Positives = 206/430 (47%), Gaps = 54/430 (12%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R  LA Q
Sbjct: 44  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELR--LAQQ 101

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 102 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 159

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    P+ASV +     RA++        A+ HLV++AV  L  G+VT++D +G 
Sbjct: 160 PSLFVREQKSPSASVTVTLEPGRALD---EGQISAVVHLVSSAVAGLPPGNVTLVDQSGH 216

Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   +   
Sbjct: 217 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKDQT 276

Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309
           E  Y P+    ++   S+    SE              ++QP    E+ +          
Sbjct: 277 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 336

Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369
           QN P  S           NT ++ E SNYE++     T  +   +ERLS+AVVVN   L 
Sbjct: 337 QNTPQTSTSTNSNSAGPRNT-QRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLA 395

Query: 370 E--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG----- 422
           +   L  +ADQ K      +I  +   A G + +RGDT+ + +  F  + + N+G     
Sbjct: 396 DGKPLPLTADQMK------QIEDLTREAMGFSDKRGDTLNVVNSPF--SAVDNTGGELPF 447

Query: 423 TVQVSFMDIL 432
             Q SF+D L
Sbjct: 448 WQQQSFIDQL 457


>gi|313901521|ref|ZP_07834968.1| flagellar M-ring protein FliF [Thermaerobacter subterraneus DSM
           13965]
 gi|313468216|gb|EFR63683.1| flagellar M-ring protein FliF [Thermaerobacter subterraneus DSM
           13965]
          Length = 551

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/339 (32%), Positives = 174/339 (51%), Gaps = 24/339 (7%)

Query: 44  NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP 103
           + P +  L+ +L+ +D   I+  L E  I F+++  G +I VP+  V + R+ LAAQGLP
Sbjct: 48  SGPQWAPLFTQLDPTDAAAIAGQLEEQGIPFQLAQGGQAILVPAEQVDRLRLDLAAQGLP 107

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
              +  G EL + +   G T F +++  +R L+GE+ARTI  + G+ AARVH+V P+   
Sbjct: 108 RQGT-VGLELLENM-PMGATEFERQVQYLRGLQGELARTIGRLEGVEAARVHVVRPERSP 165

Query: 164 FRKIGARPTASVMIRAINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLLTAN 220
           F       TA+V+++ + P      E +R   HLVA+AV  L   DVTV+D+TG+LL+A 
Sbjct: 166 FVSQQRPATAAVLVQ-LKPGAELEPEQVRSIMHLVASAVEGLKPEDVTVVDTTGRLLSAG 224

Query: 221 -----EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
                E    + G    + +  + E++ ++   L   LG  N  + V AELN D Q +  
Sbjct: 225 VELAQEGTAVVPGDRFEVERRFEAELQRSLQTLLEQVLGPGNVIARVNAELNFDQQVVER 284

Query: 276 IVYDPDSKVERSI-RLSKDAQRSETSQP-ESAVTVEQNMPHVSDRKVPLPRSLENT---D 330
            +++P +   + I R  ++ Q + T QP    V  + N+P         P+    T    
Sbjct: 285 HLFEPPADGGQGILRSIQELQETFTGQPAPGGVPGDSNIPT-------YPQVGGGTLDYQ 337

Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369
           + E  +NYE+N            + RLS+AVVVN G LT
Sbjct: 338 RSERTANYEVNQVVDRVQVAPGAVRRLSVAVVVN-GDLT 375


>gi|89094455|ref|ZP_01167395.1| flagellar M-ring protein [Oceanospirillum sp. MED92]
 gi|89081347|gb|EAR60579.1| flagellar M-ring protein [Oceanospirillum sp. MED92]
          Length = 554

 Score =  151 bits (382), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 131/497 (26%), Positives = 228/497 (45%), Gaps = 33/497 (6%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92
           + +  A   +   P    L+  L  SD N+I   L   N+ +    +G +I VP   V +
Sbjct: 35  VAIGFAVVLWSQKPEQRVLFSNLTFSDANQIIEQLRLYNVPYTFDADGRAILVPDEHVHQ 94

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
           AR+ LAA+G  +S    G+E+ D+  S G + FM+     R LEGE+ARTI S++ +  A
Sbjct: 95  ARLKLAAEGF-TSDKTVGFEILDREQSLGTSQFMETTKYRRGLEGELARTISSMTSVRNA 153

Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVL 210
           RVH+ +P    F +   +PTASV +   +    +  +  +I +LVA+++P LD+ DVTV+
Sbjct: 154 RVHLAIPKDTVFIRDTRKPTASVFLELFSGRKLERDQVASIANLVASSIPALDVKDVTVV 213

Query: 211 DSTGKLLTANEMERNIL--GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM 268
           D  G+LL   + + +++   K L   ++I+  +   +N  L   +G+  FR+ V A+++ 
Sbjct: 214 DQRGRLLNMRDKDVDVVLAAKQLEYTRSIEDTLLNRVNSILQPVVGMGRFRAEVSADVDF 273

Query: 269 DTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE- 327
            + +  + +Y+PD    RS + + D  R     P        N P      VP   S E 
Sbjct: 274 TSVEQTDELYNPDLPALRSEQ-TMDESRVGNGAPVGIPGALSNQPP-GQSSVPEQASGEG 331

Query: 328 --------NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK-GRLTEVLGRSADQ 378
                    + +K+   N+E++     T H   ++ RL++AVVV+    +    G ++  
Sbjct: 332 VIAGNGQPGSSRKQATRNFELDRTISYTKHQQGRVRRLTVAVVVDDLASVNAETGETSRT 391

Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSR 434
               + L  +  +V  A G ++ RGD++ + +  F   +   +  +    Q   MD++ +
Sbjct: 392 PWDQNELERLRILVQDAVGFSTLRGDSVNVVNTPFAAEEPIVTEEIPLWKQEWVMDVMKQ 451

Query: 435 HFATVINALVFLVGTLLVTFLGLHALRRLHNIDD-AKKGEV--------GGKSILSPPPI 485
             A +   LV + G L      L A     N+      GEV        GG    S   +
Sbjct: 452 VMAAIF-VLVLVFGILRPILRNLAAAGTAGNVAGLGAAGEVSAELEGLEGGD--FSADSV 508

Query: 486 SSAVTTGLMPNDNIALD 502
           +     GL+P  N + D
Sbjct: 509 TFGSDDGLLPTPNESFD 525


>gi|313497796|gb|ADR59162.1| FliF [Pseudomonas putida BIRD-1]
          Length = 592

 Score =  151 bits (382), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 143/571 (25%), Positives = 253/571 (44%), Gaps = 87/571 (15%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92
           + +  A   +   P Y  LY  L   D  ++   L+ A+I + +  N  ++ V +  + +
Sbjct: 50  VAIGFAVVLWSQQPDYRPLYGSLSGMDTKQVMDTLAAADIPYNVEPNSGALLVKADDLSR 109

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
           AR+ LAA G+  S  N G+EL DK    G + FM+     R+LEGE+ART+ S++ + AA
Sbjct: 110 ARLKLAAAGVAPSDGNVGFELLDKEQGLGTSQFMETTRYRRSLEGELARTVSSLNNVKAA 169

Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVL 210
           RVH+ +P    F +   +P+ASV++        ++ +  AI +LVA +VP LD   VTV+
Sbjct: 170 RVHLAIPKSSVFVRDERKPSASVLVELYPGRALEAGQVMAIVNLVATSVPELDKSQVTVV 229

Query: 211 DSTGKLLTANEMERNIL---GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELN 267
           D  G LL+  +++ + L   GK     + ++  +   ++  L   LG D +++ V A+L+
Sbjct: 230 DQKGNLLS-EQIQDSALTQAGKQFDYSRRVESMLTQRVHNILQPVLGNDRYKAEVSADLD 288

Query: 268 MDTQQIREIVYDPDSKVERSIRLSKDAQRSET-----------SQPESAVTVEQ------ 310
               +     ++PD    RS + S D QR+ +           +QP  A +  Q      
Sbjct: 289 FSAVESTSEQFNPDQPALRSEQ-SVDEQRASSQGPQGVPGALSNQPPGAASAPQTTGGAA 347

Query: 311 ---------------NMPHVSDRKVPLPRSLENTDKKEEQS--NYEINTKSIATTHDNYK 353
                          N   + D     P        K +QS  N+E++     T     +
Sbjct: 348 TPAAAIQPGQPLVDANGQQIMDPATGQPMLAPYPSDKRQQSTKNFELDRSISHTRQQQGR 407

Query: 354 LERLSIAVVVN-KGRLTEVLGRS--ADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
           + RLS+AVVV+ + ++    G +  A  G  D  LA   ++V  A G ++ RGD++T+ +
Sbjct: 408 MTRLSVAVVVDDQVKIDPATGDTTRAPWGAED--LARFTRLVQDAVGFDASRGDSVTVIN 465

Query: 411 MDFLENQLFNSGTV----QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
           + F  ++      +    Q  F DI+ +    V+  LV + G L            L+NI
Sbjct: 466 VPFAADRGEEIADIAFYQQPWFWDIV-KQVLGVVFILVLVFGVLRPV---------LNNI 515

Query: 467 DDAKKG-------EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF-SHSRNLQSR 518
               K        E+GG   L           G + ND ++L      +  S S   +++
Sbjct: 516 TGGGKQAAPDSDMELGGMMGLD----------GELANDRVSLGGPTSILLPSPSEGYEAQ 565

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKW 549
           +N+         +  ++  +  R A++++ W
Sbjct: 566 LNA---------IKGLVAEDPGRVAQVVKDW 587


>gi|241763655|ref|ZP_04761705.1| flagellar M-ring protein FliF [Acidovorax delafieldii 2AN]
 gi|241367130|gb|EER61496.1| flagellar M-ring protein FliF [Acidovorax delafieldii 2AN]
          Length = 561

 Score =  151 bits (382), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 124/434 (28%), Positives = 204/434 (47%), Gaps = 35/434 (8%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSS 105
           P Y  L+  L   D   I   LS+ N+ ++ +D G +I +PS  V   R+ LA QGLP  
Sbjct: 53  PDYRVLFANLSDKDGGAIVAQLSQMNVPYKYADGGGAILIPSDRVHDVRLRLATQGLPKG 112

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
           S  +G+EL +  N FG+T F + +   R LEGE+ R+IQ++S +  ARVH+ +P+   F 
Sbjct: 113 SV-AGFELMES-NRFGITQFQERLNFQRGLEGELTRSIQALSSVQGARVHLALPNQNGFF 170

Query: 166 KIGARPTASVMIRAINPS-VYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE- 221
           +   +P+ASV++ +++P  +   A+   I HLVA++VP L    V+VLD TGKLL+ +  
Sbjct: 171 REQQKPSASVLV-SLHPGRILDRAQLAGIVHLVASSVPELAPSAVSVLDDTGKLLSQSPD 229

Query: 222 --MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM----DTQQIRE 275
                 +  + L  VQ I+ +    I   L   +G +N ++ V AE++      T +   
Sbjct: 230 TAAGTGVDAQQLLYVQQIEQQYTRRIMDILEPVVGRNNVKAQVSAEVDFSQTESTSEQHR 289

Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV-----PLPR------ 324
               PD+   RS ++ +         P        N P  +         P P       
Sbjct: 290 PNQSPDASAVRSQQVVESNGPQGNPLPTGVPGAASNQPPAASTAPINGANPAPTAAGGQQ 349

Query: 325 --SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382
             +L    K+E   NYE++     T   +  ++RL+ AVVVN  +  E  G++  +    
Sbjct: 350 QGALGAGSKRESVINYEVDKTVRVTRGGSGAVKRLTAAVVVNY-QSAEDKGKTVAKALTP 408

Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSF-----MDILSRHFA 437
             L ++  +V    G N  RGD++ + +  F   Q+  +    V       M  L++ FA
Sbjct: 409 EQLEQMTALVRETIGFNKERGDSVNLMNTPF---QVDVTPANDVPLWKQPEMLELAKSFA 465

Query: 438 TVINALVFLVGTLL 451
             + A++F    LL
Sbjct: 466 WPVGAVLFAALVLL 479


>gi|319944162|ref|ZP_08018438.1| flagellar basal-body M-ring protein FliF [Lautropia mirabilis ATCC
           51599]
 gi|319742457|gb|EFV94868.1| flagellar basal-body M-ring protein FliF [Lautropia mirabilis ATCC
           51599]
          Length = 574

 Score =  151 bits (381), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 127/466 (27%), Positives = 221/466 (47%), Gaps = 49/466 (10%)

Query: 20  TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN 79
           T+I   A VI +   + ++A  +   P +  LY  L   +   +   L + N+ ++ ++ 
Sbjct: 30  TKIKAGAGVIAL-GAVAVSAWLWSQQPDWKVLYNNLPDREGGAVIAQLVQMNVPYKYTEG 88

Query: 80  GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEI 139
           G +I VP++MV  AR+ LAAQGLP+S + +GYEL +K   FG T F + +   R LEGE+
Sbjct: 89  GGAIMVPANMVNDARLRLAAQGLPASDT-TGYELLEK-QRFGTTQFQERLNFQRGLEGEL 146

Query: 140 ARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-------AEAIR 192
           AR+IQS++ +  ARVH+ MP    F +   +P+ASVM+     ++Y          + I 
Sbjct: 147 ARSIQSLAAVKQARVHLAMPVQSGFLREQQKPSASVML-----TLYPGRTLERGQVQGIL 201

Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAIQHEIEMNINKAL 249
            LVA++VP++    V+V+D  GKLL+    +  E N     ++    I+  +   I+  L
Sbjct: 202 ALVASSVPDMSPKQVSVVDQYGKLLSDLDGDGSEMNT--AQINYRNRIESTLTRRIDDLL 259

Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVY----DPDSKVERSIRL--SKDAQRSE----- 298
           A  +G  N R+ V A+++    +     Y    +P +   RS +   S+D   +      
Sbjct: 260 APIVGDGNIRAQVAADIDFTQSEATAETYAPNQNPGAAAMRSQQTMASRDGSGASDAAGG 319

Query: 299 -----TSQPESAVTVEQNMPHVSDRKVPLPRSLEN----TDKKEEQSNYEINTKSIATTH 349
                ++QP + V+   N    + R      S +     + ++E  +NYE++     T +
Sbjct: 320 VPGALSNQPPATVSAPINGAAQATRAAGSASSADGGTGVSTRQESVTNYEVDRTVKVTRN 379

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
               + RLS+AV+VN+ +     G+          +  I  +V  A G ++ RGD++ + 
Sbjct: 380 QTGTIRRLSVAVLVNQKQTKGDDGKEVSTPLTPLEMQSIEALVKQAVGFSAERGDSVQVV 439

Query: 410 SMDFL--------ENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447
           +  F         E  L+      VS    L + F  V+ AL+ L+
Sbjct: 440 NAAFTKRPEVVDPEVPLWKDPET-VSLAKDLGKQFGFVLLALIILM 484


>gi|301168113|emb|CBW27699.1| flagellar basal-body M-ring protein [Bacteriovorax marinus SJ]
          Length = 554

 Score =  151 bits (381), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 119/437 (27%), Positives = 209/437 (47%), Gaps = 40/437 (9%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           I+    +FF    SL   + + L S+    +  F+    + +    D LY +L   D  +
Sbjct: 8   IIRNFTEFF---NSLDLNKKIGLVSIAAFIVACFVGIVIWASKTRMDVLYTELNREDSKK 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I+V L E  I + +S++G +IS+P  ++ K R+ +A  G+ + S   GYE+FDK  SFG 
Sbjct: 65  IAVLLEEKKIPYEMSNDGKTISIPEELINKWRLEIATLGV-NFSGTVGYEVFDK-QSFGT 122

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---- 178
           TSF+Q++ + RALEGE+ +TI+ I G+  ARVH+ +P+   F      P+ASV++     
Sbjct: 123 TSFVQKVNKQRALEGELVKTIKYIRGVKRARVHLSIPESSPFVSEKKAPSASVVVDLERG 182

Query: 179 -AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI 237
             + P   K    +  LV++++  +   +V +LD  GK L+ N      +G  ++   A 
Sbjct: 183 VTLTPDEIK---GVASLVSSSIDGMRNENVVILDDRGKKLSEN------IGDPMTAYTAN 233

Query: 238 QHEIEMNINKA--------LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
           +  +E  +N+         L+  +G     + V   L+       +  +D ++K   S  
Sbjct: 234 RMALEGKVNRKYEKQIEDILSKVVGAGKVIAKVTVNLDFTESVSTKTEFDGENKAVLSEV 293

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVP-LPRSLENTDKKEEQSNYEINTKSIATT 348
            +          P+       N+P   ++  P +P +  N DK     NY + +K   + 
Sbjct: 294 SNTQKLNGSRPSPQGIPGARSNLP--GEQPQPGIPETRNNVDKSLATRNYNVPSKVTKSK 351

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY-------LAEINKIVSAATGINSR 401
           +    + ++S AV+++ GR  +V G  AD      Y       LA  + IVS+  GI++R
Sbjct: 352 NPTAGIRKISAAVMID-GRRVQVKG--ADGAISTQYERWSEADLANFSAIVSSTLGIDAR 408

Query: 402 RGDTITITSMDFLENQL 418
           RGD I I +M+F +  +
Sbjct: 409 RGDQIVIKNMEFAQEDM 425


>gi|188534120|ref|YP_001907917.1| flagellar MS-ring protein [Erwinia tasmaniensis Et1/99]
 gi|188029162|emb|CAO97034.1| Flagellar basal-body M-ring protein [Erwinia tasmaniensis Et1/99]
          Length = 571

 Score =  151 bits (381), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 114/415 (27%), Positives = 198/415 (47%), Gaps = 50/415 (12%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  LY  L   D   I   L++ N+ ++  D G ++ VP++ V + R+ LA+Q
Sbjct: 46  LWAKQPDYRVLYNNLSNEDGGAIVTQLTQMNVPYKFDDRGGALLVPAAQVHELRLRLASQ 105

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL DK   FG++ F ++I   RALEGE+ARTI ++  +  ARVH+ MP 
Sbjct: 106 GLPKGGA-VGFELLDK-EKFGISQFSEQINYQRALEGELARTIATLGPVKDARVHLAMPK 163

Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
              F +    P+ASV + A+ P          A+ H+V+++V  +  G+VTV+D +G+LL
Sbjct: 164 PTLFVREQKSPSASVTL-ALQPGRALDEGQINAVVHMVSSSVAGMPQGNVTVVDQSGRLL 222

Query: 218 TANEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           T N+   R++    L     ++   +  I   L   +G  N  + V A+++ + ++  + 
Sbjct: 223 TQNDTTGRDLNDAQLKYASDVETRYQQRIEAILGPIVGNSNVHAQVTAQIDFNKREKTDE 282

Query: 277 VYDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPHVSDR-KVPLP--------- 323
            Y P+S  E+    S+    SE    +SA  V     N P  ++   V  P         
Sbjct: 283 QYAPNSNPEQQAVRSRQTSNSEQLGGQSAGGVPGALSNQPAPANAGPVTTPNNTNANGAN 342

Query: 324 ------------------RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365
                             ++  +  + +  +NYE+N   + T  +  +++RLS+AVVVN 
Sbjct: 343 GANANNGQPANNAASGAQKTSPSNTRSDNTTNYEVNRTILHTKMNVGEVQRLSVAVVVNY 402

Query: 366 GRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
                   RS   GK     ++ + +I  +   A G + +RGD++ + +  F +N
Sbjct: 403 --------RSDAAGKPIALNEAQIKQIEDLTREAMGYSEKRGDSLNVVNSPFTQN 449


>gi|74312478|ref|YP_310897.1| flagellar MS-ring protein [Shigella sonnei Ss046]
 gi|73855955|gb|AAZ88662.1| flagellar basal-body MS(membrane and supramembrane)-ring and collar
           protein [Shigella sonnei Ss046]
 gi|323168943|gb|EFZ54623.1| flagellar M-ring protein FliF [Shigella sonnei 53G]
          Length = 552

 Score =  151 bits (381), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 117/418 (27%), Positives = 197/418 (47%), Gaps = 40/418 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +M+ +    +  +P Y  L+  L   D   I   L++ NI +  S+   +
Sbjct: 25  LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYCFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+     +   S+    SE S    P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429


>gi|320325114|gb|EFW81183.1| flagellar MS-ring protein [Pseudomonas syringae pv. glycinea str.
           B076]
          Length = 594

 Score =  151 bits (381), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 149/556 (26%), Positives = 236/556 (42%), Gaps = 98/556 (17%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L
Sbjct: 24  LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + ANI++ +  N  ++ V S  V +ARI LA  G+  + +N G+E+ DK    G + FM+
Sbjct: 84  TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINP 182
                R LEGE+ARTI +++ +  ARVH+ +P    F +   +P+ASV++     R++ P
Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHE 240
           S      AI +LVA +VP L    +TV+D  G LL+  A   E  + GK     + ++  
Sbjct: 204 S---QVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGM 260

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           +   +   L   LG D +++ V A ++    +     ++PD    RS + S + QRS +S
Sbjct: 261 LTQRVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQ-SVNEQRSSSS 319

Query: 301 -----------QPESAVTVEQNM----------------------PHVSDRKVPLPRSLE 327
                      QP    T  QN                         + D     P    
Sbjct: 320 GTGGVPGALSNQPPGPATAPQNATAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAP 379

Query: 328 NTDKKEEQS--NYEINTKSIATTHDNYKLERLSIAVVVN--------KGRLTEVLGRSAD 377
               K  QS  N+E++     T     +L RLS+AVVV+         G +T     +AD
Sbjct: 380 YPADKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAAD 439

Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF-------LENQLFNSGTVQVSFMD 430
                  LA   ++V  A G ++ RGD++++ ++ F       L    F S   Q  F D
Sbjct: 440 -------LARFTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYS---QPWFWD 489

Query: 431 ILSRHFATVINALVFLVGTL--------------LVTFLGLHALRRLHNIDDAKKGEV-- 474
           I+ +    VI  L+ + G L              L  F G   L R+  +D    GE+  
Sbjct: 490 IV-KQAVGVIFILILVFGVLRPVLTNITTGKSKELAGFGGDAELGRMGGLD----GELSN 544

Query: 475 ------GGKSILSPPP 484
                 G +SIL P P
Sbjct: 545 DRVSLGGPQSILLPSP 560


>gi|320329373|gb|EFW85366.1| flagellar MS-ring protein [Pseudomonas syringae pv. glycinea str.
           race 4]
 gi|330880568|gb|EGH14717.1| flagellar MS-ring protein [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 594

 Score =  150 bits (380), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 149/556 (26%), Positives = 236/556 (42%), Gaps = 98/556 (17%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L
Sbjct: 24  LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + ANI++ +  N  ++ V S  V +ARI LA  G+  + +N G+E+ DK    G + FM+
Sbjct: 84  TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINP 182
                R LEGE+ARTI +++ +  ARVH+ +P    F +   +P+ASV++     R++ P
Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHE 240
           S      AI +LVA +VP L    +TV+D  G LL+  A   E  + GK     + ++  
Sbjct: 204 S---QVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGM 260

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           +   +   L   LG D +++ V A ++    +     ++PD    RS + S + QRS +S
Sbjct: 261 LTQRVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQ-SVNEQRSSSS 319

Query: 301 -----------QPESAVTVEQNM----------------------PHVSDRKVPLPRSLE 327
                      QP    T  QN                         + D     P    
Sbjct: 320 STGGVPGALSNQPPGPATAPQNATAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAP 379

Query: 328 NTDKKEEQS--NYEINTKSIATTHDNYKLERLSIAVVVN--------KGRLTEVLGRSAD 377
               K  QS  N+E++     T     +L RLS+AVVV+         G +T     +AD
Sbjct: 380 YPADKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAAD 439

Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF-------LENQLFNSGTVQVSFMD 430
                  LA   ++V  A G ++ RGD++++ ++ F       L    F S   Q  F D
Sbjct: 440 -------LARFTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYS---QPWFWD 489

Query: 431 ILSRHFATVINALVFLVGTL--------------LVTFLGLHALRRLHNIDDAKKGEV-- 474
           I+ +    VI  L+ + G L              L  F G   L R+  +D    GE+  
Sbjct: 490 IV-KQAVGVIFILILVFGVLRPVLTNITTGKSKELAGFGGDAELGRMGGLD----GELSN 544

Query: 475 ------GGKSILSPPP 484
                 G +SIL P P
Sbjct: 545 DRVSLGGPQSILLPSP 560


>gi|261344120|ref|ZP_05971764.1| flagellar M-ring protein FliF [Providencia rustigianii DSM 4541]
 gi|282567712|gb|EFB73247.1| flagellar M-ring protein FliF [Providencia rustigianii DSM 4541]
          Length = 564

 Score =  150 bits (380), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 144/549 (26%), Positives = 258/549 (46%), Gaps = 77/549 (14%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  SP Y  L   L   D   I   L++ N+ ++I+DNGS+I VP+  V + R+ LA  G
Sbjct: 47  WFRSPDYRVLLSNLSAKDGGDIVGQLTQMNVPYQIADNGSAILVPADKVHELRLKLAQSG 106

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP    N+G+EL DK   FG++ F ++I   RALEGE++RTI+S+S + +ARVH+ +P  
Sbjct: 107 LPKGG-NTGFELLDK-EQFGISQFSEQINYQRALEGELSRTIESLSPVQSARVHLAIPKP 164

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    PTASV +  +   V    +  AI H+V+++V  L   +V ++D TG+LLT 
Sbjct: 165 TLFVREQKLPTASVTVGLLPGRVLDEGQISAIVHMVSSSVTGLTAANVIIVDQTGRLLTN 224

Query: 220 NE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
           N+  +++     + + + ++  ++  I   L+  +G  N  + V A+++    +     Y
Sbjct: 225 NDNSQQSANSAQIKMTKEMETHLKERIEDILSPLVGRANIHAQVTAQMDFSKVEQTSEEY 284

Query: 279 D----PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD---- 330
                PD+   RS + S+  Q S    P        N P VS    P+    EN D    
Sbjct: 285 KPNQTPDAAAIRSRQNSESMQNSNGG-PGGVPGALSNQP-VSAPSAPI--EAENKDNTGK 340

Query: 331 ---------------KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS 375
                          +++E +NYE++ K   T      ++RLS+AV+VN           
Sbjct: 341 NNQNTTTTRNGTLNSQRDETTNYEVDRKISHTQRQIGVVDRLSVAVIVN---------YQ 391

Query: 376 ADQGK--------IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVS 427
           A +G+            + +I+ +   A G +++RGD++ IT      N LF S    + 
Sbjct: 392 AQEGEKGVEMKPLPPEMIKQIDALTREAMGYSTQRGDSLNIT------NSLFTSDAPAIE 445

Query: 428 FMDIL-SRHFATVINALVF---LVGTLLVTFLGLHALR-RLHNIDDAKKGEVGGKSILSP 482
              +L S  F  V  AL +   ++  ++  F+    ++ +      A++ +   ++    
Sbjct: 446 ETSLLNSPQF--VSQALDYGKIILIAIIAWFMWRFGIKPQWVKYRKAQQAQADAETF--- 500

Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRN--LQSRINSYVSKQSDLRLLHMIEINEE 540
             I++  TT  +  + I     N+D+   +R    + R+++ +  Q   R+  M E + +
Sbjct: 501 --IATQSTTPFVVEEEI-----NEDMDEKTRRRLTRQRVSAEIQSQ---RIREMAEKDPQ 550

Query: 541 RFAKILRKW 549
             A ++R+W
Sbjct: 551 VVAMVIRQW 559


>gi|149203111|ref|ZP_01880082.1| flagellar M-ring protein FliF [Roseovarius sp. TM1035]
 gi|149143657|gb|EDM31693.1| flagellar M-ring protein FliF [Roseovarius sp. TM1035]
          Length = 535

 Score =  150 bits (380), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 149/544 (27%), Positives = 254/544 (46%), Gaps = 31/544 (5%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           R RI+++ +  ++   +   AR   ++P    LY  LE S    +  AL +  + + + +
Sbjct: 14  RNRIIVIGAAFVMFWAVLALARM-ASTPSMTLLYAGLESSAAGEVVAALEQQGVTYEVRN 72

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           +  +I V S+   + R+ LA +GLP S + SGYEL D ++ FG TS M +    RA EGE
Sbjct: 73  D--AILVDSTRRDELRMILAGEGLPRSGT-SGYELLDGLSGFGTTSQMFDAAYWRAKEGE 129

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV-YKSAEAIRHLVAA 197
           +ARTI S   IVAARVHI       F++   R +ASV +     +V  K A A++ LVA+
Sbjct: 130 LARTIVSHPAIVAARVHIASTGANPFQRNVHR-SASVSVSTNGAAVSAKHARALQFLVAS 188

Query: 198 AVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDN 257
           AV +L   DV+++D+ G LL+  E  +       +        + +   + L A +G  N
Sbjct: 189 AVADLTPDDVSIIDAEGTLLSGAEEAKT------NTADERAEGLRLRAQRLLEARVGHGN 242

Query: 258 FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSD 317
               +  E    T+  RE  +DP+ +V  S    + A  S  +  ++ VTV  N+P   D
Sbjct: 243 AVVEIALETVTQTESTRERRFDPEGRVAISTDTEERANTSNGT--DNGVTVASNLPD-GD 299

Query: 318 RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSAD 377
                  + ENT+ + E+ NYE+++           ++R+++A+++N     +  G    
Sbjct: 300 AAAAATSASENTETR-ERVNYEVSSTEREVIQQPGAIKRMTVAILINGITTPDASGTPIF 358

Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437
             + +  L  +  +V +A G++  RGD +TI ++ F E        V+   ++ L+    
Sbjct: 359 APRPEEELTALGDLVGSAVGLDETRGDALTIRTLQF-EPSAPTGTLVEAGLLERLAIDTM 417

Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVT--TGLMP 495
           T++ +LV  +  L+   LGL  LR + +             I   P    A+T  +G++ 
Sbjct: 418 TLVQSLVLAIVALV---LGLFVLRPILSRPVPLATPQLSAPIRRAPVQDPALTPLSGVIE 474

Query: 496 NDNIAL----DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWAR 551
           + +I +    D S     S    L    +  VS     RL  +I   +E   +ILR W  
Sbjct: 475 DGDIDVAGLSDVSEAPQISLRPRLDGGTDDPVS-----RLRALIGQRQEETVEILRNWLE 529

Query: 552 SEIE 555
           +E E
Sbjct: 530 AEEE 533


>gi|315286666|gb|EFU46099.1| flagellar M-ring protein FliF [Escherichia coli MS 110-3]
          Length = 510

 Score =  150 bits (380), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 114/398 (28%), Positives = 188/398 (47%), Gaps = 38/398 (9%)

Query: 43  VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL 102
            N P Y  L+  L   D   I   L++ NI +R S+   +I VP+  V + R+ LA QGL
Sbjct: 1   ANPPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGL 60

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162
           P   +  G+EL D+   FG++ F +++   RALEGE++RTI++I  +  ARVH+ MP   
Sbjct: 61  PKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPS 118

Query: 163 SFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-A 219
            F +    P+ASV +  +        +  AI HLV++AV  L  G+VT++D  G LLT +
Sbjct: 119 LFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQS 178

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
           N   R++    L     ++  I+  I   L+  +G  N  + V A+L+  +++  E  Y 
Sbjct: 179 NTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYR 238

Query: 280 PDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ- 335
           P+     +   S+    SE S    P        N P  ++   P+     N + +++Q 
Sbjct: 239 PNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPAN-NAPISTPPANQNNRQQQA 297

Query: 336 ----------------SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQG 379
                           SNYE++     T  +   ++RLS+AVVVN   L +        G
Sbjct: 298 STTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPD--------G 349

Query: 380 KI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           K     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 350 KPLPLSNEQMKQIEALTREAMGFSEKRGDSLNVVNSPF 387


>gi|300899195|ref|ZP_07117471.1| flagellar M-ring protein FliF [Escherichia coli MS 198-1]
 gi|300357176|gb|EFJ73046.1| flagellar M-ring protein FliF [Escherichia coli MS 198-1]
          Length = 511

 Score =  150 bits (380), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 114/398 (28%), Positives = 188/398 (47%), Gaps = 38/398 (9%)

Query: 43  VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL 102
            N P Y  L+  L   D   I   L++ NI +R S+   +I VP+  V + R+ LA QGL
Sbjct: 2   ANPPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGL 61

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162
           P   +  G+EL D+   FG++ F +++   RALEGE++RTI++I  +  ARVH+ MP   
Sbjct: 62  PKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPS 119

Query: 163 SFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-A 219
            F +    P+ASV +  +        +  AI HLV++AV  L  G+VT++D  G LLT +
Sbjct: 120 LFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQS 179

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
           N   R++    L     ++  I+  I   L+  +G  N  + V A+L+  +++  E  Y 
Sbjct: 180 NTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYR 239

Query: 280 PDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ- 335
           P+     +   S+    SE S    P        N P  ++   P+     N + +++Q 
Sbjct: 240 PNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPAN-NAPISTPPANQNNRQQQA 298

Query: 336 ----------------SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQG 379
                           SNYE++     T  +   ++RLS+AVVVN   L +        G
Sbjct: 299 STTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPD--------G 350

Query: 380 KI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           K     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 351 KPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 388


>gi|268678860|ref|YP_003303291.1| flagellar M-ring protein FliF [Sulfurospirillum deleyianum DSM
           6946]
 gi|268616891|gb|ACZ11256.1| flagellar M-ring protein FliF [Sulfurospirillum deleyianum DSM
           6946]
          Length = 574

 Score =  150 bits (379), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 137/458 (29%), Positives = 226/458 (49%), Gaps = 51/458 (11%)

Query: 28  VILVPIMLFMAARFFVNSPH-----YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           V+L+  ++F+    + N+       Y  L+ K    D   I   L +  + +++ D G+ 
Sbjct: 30  VVLIGFLVFLM--LYKNTSSSSMSGYTILFEKTTAGDSALIIQQLEKDKVPYKVLDEGT- 86

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I+VP+ MV K RI +AA G+P +S   G+E+FDK   FG T F Q+I  +RALEGE+ART
Sbjct: 87  IAVPNDMVHKQRIAIAALGIPKNS-KVGFEIFDK-TEFGATDFEQKIKYIRALEGELART 144

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVP 200
           I+S+  I  A VHI +P    F +     TAS++  IR       K    IR+LVAA++ 
Sbjct: 145 IESLGPIANASVHIAIPKESVFAQKQVPATASIVLNIRQGMALSVKQIVGIRNLVAASIA 204

Query: 201 NLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFL-GVD 256
           NL   +V++++  G+ L    +N  +  ++   +   +  +H IE  I   LA  + GVD
Sbjct: 205 NLPAENVSIVNQDGEPLGDEESNLFQGELVKSQIRYKKEFEHNIEQKIINVLAPVIGGVD 264

Query: 257 NFRSAVVAELNMDTQQIREIVYDPDS--KVERSIRLSKDAQRSETSQPESAVTVEQNMPH 314
              + V  + +   Q     VYDP+S  + E+S+      ++ E  +P+    V   + +
Sbjct: 265 KVNAKVTIDFDFSQQDYVSEVYDPNSVPRSEQSVE-----EKREGKEPQDVGGVPGAISN 319

Query: 315 VSDRKVPLPRSLENTDKKE------EQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368
           +     P+ + LE+T K E        +NYEI+ K + +  +  K++RL+ AVVV+    
Sbjct: 320 IG----PV-QGLESTKKGETYQKSSTTTNYEISKKVVNSKDEFAKIKRLTAAVVVDG--- 371

Query: 369 TEVLGRSADQGKIDSY---------LAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           T   G  AD  K +           +  I  +V    G N+ RGD +T+++++F    L 
Sbjct: 372 TYKYGLDADGNKKNELEYFPLSKEQMDAIRDVVRQTVGYNATRGDEVTVSNLEF--KPLS 429

Query: 420 NSGT--VQVSFMDILSRHFATVINALVF-LVGTLLVTF 454
           + GT     SFM+ +  +   +   L + LV  LL  F
Sbjct: 430 SDGTRVPPKSFMEEVLSYLIKLTPLLKYILVAGLLFIF 467


>gi|163732487|ref|ZP_02139932.1| flagellar M-ring protein FliF, putative [Roseobacter litoralis Och
           149]
 gi|161393847|gb|EDQ18171.1| flagellar M-ring protein FliF, putative [Roseobacter litoralis Och
           149]
          Length = 504

 Score =  150 bits (379), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 135/430 (31%), Positives = 214/430 (49%), Gaps = 31/430 (7%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
              +P+   LY  LE      +  AL +    F +   G SI V SS   + R+ LA++G
Sbjct: 1   MATAPNMTLLYAGLENGAAGDVVTALEQRGAVFEV--RGGSIFVDSSQRDELRMTLASEG 58

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP++S+  GYEL D ++ FG TS M +    RA EGE+ARTI S   I  ARVHI     
Sbjct: 59  LPANSTR-GYELLDTLSGFGTTSQMFDAAYWRAKEGELARTIVSSPHIAMARVHIASTGS 117

Query: 162 GSFRKIGARPTASVMIR----AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
             F++ G  P AS+ +     AI P   +  +AIR LV++AV  L   DV V+D+ G L+
Sbjct: 118 NPFQR-GVTPKASISVTPSGAAITP---QQGKAIRFLVSSAVAGLASEDVAVIDANGALI 173

Query: 218 -TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
             A+E+   I G+  + V      ++  + + L A +G  N    V  +   +++ IRE 
Sbjct: 174 GNADEVAPTIGGEDKADV------LKARVQRLLEARVGFGNSVVEVSVDTVTESESIRER 227

Query: 277 VYDPDSKVERSIRLSKDAQRSETSQPESA---VTVEQNMPHVSDRKVPLPRSLENTDKKE 333
            +DP+S+V     +S D +   TS  E+    VTV  N+P   D       S +N + + 
Sbjct: 228 TFDPESRV----AISTDTEERNTSSSEAGGGDVTVASNLPD-EDGAGGENSSSQNNETR- 281

Query: 334 EQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVS 393
           E+ NYE++        +   ++R+++AV+VN+  LT+  G      + ++ L  +  +V+
Sbjct: 282 ERVNYEVSETEREVLREPGAIKRVTVAVLVNEMTLTDEAGEQTVAPRDENELEALRDLVA 341

Query: 394 AATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVT 453
           +A G +  RGD ITI SM      L   GT   +   ++S     V++A+   +  L+  
Sbjct: 342 SAVGFDEARGDIITIKSMGLQSVPL--QGT--AAGTSLMSNFNIDVMSAVQMAILALVTL 397

Query: 454 FLGLHALRRL 463
            LGL  +R L
Sbjct: 398 ILGLFVVRPL 407


>gi|89899361|ref|YP_521832.1| flagellar M-ring protein FliF [Rhodoferax ferrireducens T118]
 gi|89344098|gb|ABD68301.1| flagellar M-ring protein FliF [Rhodoferax ferrireducens T118]
          Length = 588

 Score =  150 bits (379), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 122/462 (26%), Positives = 209/462 (45%), Gaps = 48/462 (10%)

Query: 22  ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81
           +++  ++ ++ +M+   A + V       LY  L   D   I   L+  N+ ++ +D G 
Sbjct: 60  LVVFVAIGIIGLMMGRQAEWRV-------LYANLADKDGGAIVAQLTTMNVPYKYADGGG 112

Query: 82  SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
           +I VP+  V   R+ LA+QGLP  +  +G+E  D  N FG+T F + +   R LEGE+ R
Sbjct: 113 AILVPADKVYDTRLRLASQGLPKGAV-AGFETMD-ANRFGMTQFQERLAFQRGLEGELTR 170

Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAV 199
           +IQ++S + +ARVH+ +P+   F +   +P+ASV++          A+   I HLV+++V
Sbjct: 171 SIQALSSVQSARVHLALPNQNGFFREQQKPSASVLVSLNAGRTLDRAQLAGIVHLVSSSV 230

Query: 200 PNLDMGDVTVLDSTGKLLTANE----MERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255
           P ++   V+VLD +GKLL+              + L  VQ ++      I   L   +G 
Sbjct: 231 PEMNASAVSVLDDSGKLLSTPPEGADGAGGGDAQQLQYVQQLEQLYSRRILDILEPVVGR 290

Query: 256 DNFRSAVVAELNM----DTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311
            N R+ V AEL+      T +  +    PDS   RS ++S+ +  S  S P S V     
Sbjct: 291 GNARAQVTAELDFSQTESTSESHKPNQTPDSSAIRSQQVSESSNGSGISGPPSGV----- 345

Query: 312 MPHVSDRKVPLPRSLE------------------NTDKKEEQSNYEINTKSIATTHDNYK 353
            P  +  K P P S                       ++E   NYE++            
Sbjct: 346 -PGATSNKPPGPSSAPINGAPQTLTAAGAGASAGAGGRRESIINYEVDKTVKVVRGGTGI 404

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           ++R+S AVVVN   +T+  G++         + ++  +V    G N  RGD++ + +  F
Sbjct: 405 VKRISAAVVVNHQSVTDAKGKTTTTPLSAQQIEQMTALVRETVGFNKERGDSVNLMNAPF 464

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455
              ++     V + F          +  +L + +GTLL   L
Sbjct: 465 TTERVV---PVDLPFWK--QSEIQDLARSLAWPLGTLLFGAL 501


>gi|291085209|ref|ZP_06352408.2| flagellar M-ring protein FliF [Citrobacter youngae ATCC 29220]
 gi|291072341|gb|EFE10450.1| flagellar M-ring protein FliF [Citrobacter youngae ATCC 29220]
          Length = 557

 Score =  150 bits (379), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 116/406 (28%), Positives = 195/406 (48%), Gaps = 48/406 (11%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ N+ +R ++   +I VP+  V + R+ LA Q
Sbjct: 44  LWAKAPDYRTLFSNLSDQDGGAIVTQLTQMNVPYRFTEGSGAIEVPADKVHELRLRLAQQ 103

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  +  ARVH+ +P 
Sbjct: 104 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKRARVHLALPK 161

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    P+ASV +     RA++        A+ HLV++AV  L  G+VT++D  G 
Sbjct: 162 PSLFVREQKAPSASVTVNLEPGRALDEG---QISAVTHLVSSAVAGLPPGNVTLVDQAGH 218

Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  
Sbjct: 219 LLTQSNTSSRDLNDAQLKYASDVEGRIQRRIESILSPIVGNGNVHAQVTAQLDFANKEQT 278

Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQPESAVTVEQNMPHVSDRKV 320
           E  Y P+    +++  S+    SE              ++QP  A T     P  + +  
Sbjct: 279 EEQYRPNGDDSQAVLRSRQLNVSEQIGSGAPGGVPGALSNQPAPANTAPIATPPANQQNA 338

Query: 321 PL-----------PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369
                        PRS +    + E SNYE++     T  +   ++RLS+AVVVN   L 
Sbjct: 339 QTTQTTNNSSNAGPRSTQ----RNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLP 394

Query: 370 E--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           +   L  +A+Q K      +I  +   A G + +RGDT+ + +  F
Sbjct: 395 DGKPLPLTAEQMK------QIEDLTREAMGFSDKRGDTLNVVNSPF 434


>gi|222033677|emb|CAP76418.1| flagellar M-ring protein [Escherichia coli LF82]
          Length = 552

 Score =  150 bits (379), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 117/418 (27%), Positives = 198/418 (47%), Gaps = 40/418 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D    LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGLHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVS 316
           + V A+L+  +++  E  Y P+    ++   S+    SE S    P        N P  +
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGGVPGALSNQPAPA 320

Query: 317 DRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATTHDNYKLERLSI 359
           +   P+     N + +++Q                 SNYE++     T  +   ++RLS+
Sbjct: 321 N-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVVVN   L +        GK     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 380 AVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 429


>gi|289627784|ref|ZP_06460738.1| flagellar MS-ring protein [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289651625|ref|ZP_06482968.1| flagellar MS-ring protein [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|298487835|ref|ZP_07005875.1| Flagellar M-ring protein fliF [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157560|gb|EFH98640.1| Flagellar M-ring protein fliF [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330866444|gb|EGH01153.1| flagellar MS-ring protein [Pseudomonas syringae pv. aesculi str.
           0893_23]
 gi|330986489|gb|EGH84592.1| flagellar MS-ring protein [Pseudomonas syringae pv. lachrymans str.
           M301315]
 gi|331011063|gb|EGH91119.1| flagellar MS-ring protein [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 594

 Score =  150 bits (379), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 152/603 (25%), Positives = 258/603 (42%), Gaps = 98/603 (16%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L
Sbjct: 24  LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + ANI++ +  N  ++ V S  V +ARI LA  G+  + +N G+E+ DK    G + FM+
Sbjct: 84  TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINP 182
                R LEGE+ARTI +++ +  ARVH+ +P    F +   +P+ASV++     R++ P
Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHE 240
           S      AI +LVA +VP L    +TV+D  G LL+  A   E  + GK     + ++  
Sbjct: 204 S---QVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGM 260

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           +   +   L   LG D +++ V A ++    +     ++PD    RS + S + QRS +S
Sbjct: 261 LTQRVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQ-SVNEQRSSSS 319

Query: 301 -----------QPESAVTVEQNM----------------------PHVSDRKVPLPRSLE 327
                      QP    T  QN                         + D     P    
Sbjct: 320 STGGVPGALSNQPPGPATAPQNATAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAP 379

Query: 328 NTDKKEEQS--NYEINTKSIATTHDNYKLERLSIAVVVN--------KGRLTEVLGRSAD 377
               K  QS  N+E++     T     +L RLS+AVVV+         G +T     +AD
Sbjct: 380 YPADKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAAD 439

Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF-------LENQLFNSGTVQVSFMD 430
                  LA   ++V  A G ++ RGD++++ ++ F       L    F S   Q  F D
Sbjct: 440 -------LARFTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYS---QPWFWD 489

Query: 431 ILSRHFATVINALVFLVGTL--LVTFLGLHALRRLHNI-DDAKKGEVGGKSILSPPPISS 487
           I+ +    VI  L+ + G L  ++T +     + L     DA+ G +GG           
Sbjct: 490 IV-KQAVGVIFILILVFGVLRPVLTNITTGKSKELAGFGGDAELGGMGG----------- 537

Query: 488 AVTTGLMPNDNIALDSSNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546
               G + ND ++L      +  S +    +++N+  S         ++  +  R A+++
Sbjct: 538 --LDGELSNDRVSLGGPQSILLPSPTEGYDAQLNAIKS---------LVAEDPGRVAQVV 586

Query: 547 RKW 549
           ++W
Sbjct: 587 KEW 589


>gi|238794015|ref|ZP_04637633.1| Flagellar M-ring protein [Yersinia intermedia ATCC 29909]
 gi|238726647|gb|EEQ18183.1| Flagellar M-ring protein [Yersinia intermedia ATCC 29909]
          Length = 572

 Score =  150 bits (378), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 140/553 (25%), Positives = 255/553 (46%), Gaps = 75/553 (13%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  SP Y  LY  L   D   I   L++ NI +R +DNG ++ +P+  V + R+ LA Q
Sbjct: 46  LWAKSPDYRVLYSNLNDRDGGDIVTQLTQLNIPYRFADNGGALLIPADKVHETRLRLAQQ 105

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE++RTI ++  ++  RVH+ MP 
Sbjct: 106 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRTISTLGPVMNVRVHLAMPK 163

Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
              F +    PTASV + A+ P          AI ++V+++V  L  G+VTV+D TG+LL
Sbjct: 164 PSLFVREQKSPTASVTL-ALQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLL 222

Query: 218 T-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           T ++   R++    L     +++  +  I   LA  +G  N  + V A+++  +++  + 
Sbjct: 223 TQSDSAGRDLNAAQLKFTNEVENRFQRRIETILAPMVGNGNVHAQVTAQVDFASREQTDE 282

Query: 277 VYDPDSKVERSIRLSKDAQRSE--------------TSQPESAVTVEQNMPH-------- 314
            Y P+   ++    S+    SE              ++QP +        P         
Sbjct: 283 EYKPNQAADKGAVRSQQVSTSEQLGGTNVGGVPGALSNQPSATPVAPIETPQATPAAGAA 342

Query: 315 ------------VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
                        +        +  +  + ++ +N+E++     T      ++RLS+AVV
Sbjct: 343 GATANNANAANRPATTTAAKSTATSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVV 402

Query: 363 VNKG--RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           VN G  +  + +  + DQ      LA++  +   A G ++ RGDT+ + +  F      +
Sbjct: 403 VNYGSDKAGKPVALTKDQ------LAQVESLTREAMGFSTDRGDTLNVVNTPFSATDDAS 456

Query: 421 SGTV----QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476
             T+    Q SF D        ++NA  +L+  LLV ++     R+L     AKK +V  
Sbjct: 457 GNTLPFWQQQSFFD-------QMLNAGRYLL-ILLVAWI---LWRKLVRPMMAKK-QVAD 504

Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536
           K+  S   I++ V T +   +      S +++    +N Q R+++ V  Q   R+  + +
Sbjct: 505 KAAAS---INNIVQTAVASEN---AKQSKEELALRKKN-QQRVSAEVQAQ---RIRELAD 554

Query: 537 INEERFAKILRKW 549
            +    A ++R+W
Sbjct: 555 KDPRVVALVIRQW 567


>gi|46578729|ref|YP_009537.1| flagellar M-ring protein FliF [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46448141|gb|AAS94796.1| flagellar M-ring protein FliF [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311232601|gb|ADP85455.1| flagellar M-ring protein FliF [Desulfovibrio vulgaris RCH1]
          Length = 538

 Score =  150 bits (378), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 120/421 (28%), Positives = 201/421 (47%), Gaps = 17/421 (4%)

Query: 21  RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80
           R+ I+  + LV + +F     ++N P Y  LY  L   D NR+   L    + +++ ++G
Sbjct: 24  RVFIVG-LALVTVGIFFTLILWINRPDYRVLYSNLAGEDANRVVKLLQANKVPYKLENDG 82

Query: 81  SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140
            ++ VP+  +   RI +A +G        G+E+FD +   G T F+Q+I   RAL+GE+ 
Sbjct: 83  GTVLVPADKLYDLRIKVAGEG-NLVGQGIGFEIFDDLK-VGQTDFVQKINYQRALQGELI 140

Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI--RAINPSVYKSAEAIRHLVAAA 198
           RTI    G+  ARVH+V+P    F +   +P+ASV++  R       +  +AI +LV  A
Sbjct: 141 RTISEFPGVETARVHLVIPHRSLFIEEQQKPSASVVVKLREGKKMEAQDVQAIVNLVVMA 200

Query: 199 VPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255
           V  +D   V+V D++GK+L   T ++  + +    L     +Q  +E  I + L   +G 
Sbjct: 201 VEGMDRNRVSVADTSGKILYYPTEDDSLQGLTTTQLEYKMRLQQNLERRIEELLYPVIGP 260

Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV 315
               + V A+++   + IR  +YDP+  V RS       QRSE S    A  +E   P  
Sbjct: 261 GKVIAKVNADVDFSQRTIRRELYDPEKTVVRS------EQRSEESTRGRA-NLEAGAPDA 313

Query: 316 SDRKVPLPRSLENTDKKEE--QSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373
           + R   +  S    +   E   +N+EIN +      +   L RLS+AV+V+        G
Sbjct: 314 NFRGDGISGSASTQEGTRETRTTNFEINKEEQNIVANVGDLSRLSVAVIVDGTYEKAADG 373

Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433
                 +    +  I ++VS+A G +  RGDT+ + S+ F    L    ++   F+D   
Sbjct: 374 TYTFVPRNAEEMQRIRQLVSSAVGYDRARGDTVEVNSISFGGPDLPQEASLPQLFLDYAL 433

Query: 434 R 434
           R
Sbjct: 434 R 434


>gi|309388817|gb|ADO76697.1| flagellar M-ring protein FliF [Halanaerobium praevalens DSM 2228]
          Length = 512

 Score =  150 bits (378), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 117/378 (30%), Positives = 193/378 (51%), Gaps = 30/378 (7%)

Query: 45  SPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPS 104
           S +Y  L+  L  SD   I   L E  +D+++  NG++I VP S + + R+ +A+ GLP 
Sbjct: 47  SSNYQPLFTNLSTSDTAAIVERLDENQVDYKLGGNGNTILVPESEIHRLRLDMASAGLPD 106

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
                G+E+FD  + FG T F + +   RAL GE++R+IQSISGI  ARV I  P+   F
Sbjct: 107 QGV-VGFEIFDS-SDFGTTEFERRVNYYRALGGELSRSIQSISGIEFARVQITPPEESLF 164

Query: 165 RKIGARPTASVMIRAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-- 219
                  TASV+++ ++     S+E   A+++LVA+ V +L + +VT++D+ G LL+   
Sbjct: 165 LDEEKSATASVVVK-LSAGYKMSSERVRAVQNLVASGVQDLPLEEVTLVDTNGNLLSKPV 223

Query: 220 -NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
            +E  R    ++ +I +  +  ++ ++   L   LG +NF   V A+LN D +      Y
Sbjct: 224 NSEDGRWSDPQNFAIQKEFESALKNDLRVLLTKVLGPNNFAVQVNAKLNFDQRHSESKTY 283

Query: 279 DP---DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ 335
            P   DS + RS  ++ ++Q  E      A   + N+P           S    D++   
Sbjct: 284 APVIDDSGIIRSQEVNTESQ--ENGINGGAPGTDANIPQYQAEGTGEASSY---DRENTI 338

Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395
           +NYEIN +     +   ++ERLS++V++             DQ   +  +A+I   V AA
Sbjct: 339 TNYEINERIEEHIYAPGEVERLSVSVML-------------DQDTDEEKIAQIRNAVGAA 385

Query: 396 TGINSRRGDTITITSMDF 413
            G N  RGD + I+S+ F
Sbjct: 386 IGYNEDRGDVLNISSIAF 403


>gi|209884352|ref|YP_002288208.1| flagellar M-ring protein FliF [Oligotropha carboxidovorans OM5]
 gi|209872548|gb|ACI92344.1| flagellar M-ring protein FliF [Oligotropha carboxidovorans OM5]
          Length = 537

 Score =  150 bits (378), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 105/375 (28%), Positives = 186/375 (49%), Gaps = 5/375 (1%)

Query: 43  VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL 102
           V +P    LY  L   D   +   L    I + + ++G+ I VP   V + R+ LA  GL
Sbjct: 37  VTAPQMITLYTDLGYDDAAGVIKELDRQGIPYEMKNDGAIIMVPKDKVTRLRMKLAESGL 96

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162
           P  S   GYE+FDK  + G TSF+Q +  +RALEGE+ARTI++I  I   RVH+V+P+  
Sbjct: 97  PKGSG-VGYEIFDKSETLGSTSFVQNVNHLRALEGELARTIKAIDRIQGVRVHLVLPERP 155

Query: 163 SFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM 222
            F +    P+A++++R       +   AIRHLVA++V  L    V+++D  G+LL     
Sbjct: 156 LFSREKPEPSAAIVVRVRGALEAQQVRAIRHLVASSVNGLKPQRVSIVDENGQLLADGSG 215

Query: 223 ERNILGKSLSIVQAIQHE--IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP 280
           + N +G   +  + + +E  +   I   + + +G    R  + A+ + +        +DP
Sbjct: 216 DANGMGDVGADERRVAYENRLRKQIESIVTSVVGGGRARVQLSADFDYNKVTETSDKFDP 275

Query: 281 DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEI 340
           + +V RS + +++   + ++     VTV   MP  + ++       +   K EE +NYEI
Sbjct: 276 EGRVLRSSQ-TREESSATSNGLNGQVTVNNEMPG-NQQQNAANAGKDQAKKSEEINNYEI 333

Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400
           +  +     +  +++R+S+AV+V+        G      +    L  I  +V +A G + 
Sbjct: 334 SRTTKTEVTEAGRVQRMSVAVLVDGVYSRNEKGDQVYAPRSQEDLERIATLVRSAIGFDK 393

Query: 401 RRGDTITITSMDFLE 415
            RGD + + ++ F +
Sbjct: 394 ARGDQVEVVNLRFAD 408


>gi|183598654|ref|ZP_02960147.1| hypothetical protein PROSTU_02060 [Providencia stuartii ATCC 25827]
 gi|188020839|gb|EDU58879.1| hypothetical protein PROSTU_02060 [Providencia stuartii ATCC 25827]
          Length = 562

 Score =  150 bits (378), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 117/414 (28%), Positives = 208/414 (50%), Gaps = 51/414 (12%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           ++ SP Y  L   L   D   I   L++ N+ ++I+DNGS+I VP+  V + R+ LA  G
Sbjct: 47  WLRSPDYRVLLSNLSAKDGGDIVSQLTQMNVPYQIADNGSAILVPAEKVHELRLKLAQSG 106

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP    N+G+EL DK   FG++ F +++   RALEGE++RTI+S+S +  ARVH+ +P  
Sbjct: 107 LPKGG-NTGFELLDK-EQFGISQFSEQVNYQRALEGELSRTIESLSPVQNARVHLAIPKP 164

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    PTASV +  +   +    +  AI H+V+++V  L   +VT++D TG+LLT 
Sbjct: 165 TLFVREQKLPTASVTVGLLPGRMLDEGQITAIVHMVSSSVSGLTAANVTIVDQTGRLLTN 224

Query: 220 NE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
           N+  +++     + + + ++  ++  I   ++  +G  N  + V A+++    +     Y
Sbjct: 225 NDNSQQSANNAQIKMTKEMESHLKQRIEDIISPLVGRANVHAQVTAQMDFSKVEQTSEEY 284

Query: 279 DPDSKVER-SIRLSKDAQRSE-------------TSQPESAVTVEQNMPHVSDRKVPLPR 324
            P+      ++R  +++Q S+             ++QP SA +     P  +D K     
Sbjct: 285 KPNQTPNSAAVRSRQNSQSSQNNTSGVGGVPGALSNQPPSAPSA----PISTDNKG--AN 338

Query: 325 SLENT--------DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA 376
           S +N+         + +E +NYE++ K   T      ++RLS+AV++N       L +  
Sbjct: 339 SAQNSPSNNGSSLSQSDETTNYEVDRKISHTQRQIGVIDRLSVAVIIN------YLPQDG 392

Query: 377 DQGKID------SYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424
           + G           + +I  +   A G +S RGD+++IT      N LF + TV
Sbjct: 393 EDGTQQMKPLSPEMMQQIESLTREAMGYSSTRGDSLSIT------NSLFTNDTV 440


>gi|120603707|ref|YP_968107.1| flagellar M-ring protein FliF [Desulfovibrio vulgaris DP4]
 gi|120563936|gb|ABM29680.1| flagellar M-ring protein FliF [Desulfovibrio vulgaris DP4]
          Length = 538

 Score =  150 bits (378), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 123/428 (28%), Positives = 207/428 (48%), Gaps = 31/428 (7%)

Query: 21  RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80
           R+ I+  + LV + +F     ++N P Y  LY  L   D NR+   L    + +++ ++G
Sbjct: 24  RVFIVG-LALVTVGIFFTLILWINRPDYRVLYSNLAGEDANRVVKLLQANKVPYKLENDG 82

Query: 81  SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140
            ++ VP+  +   RI +A +G        G+E+FD +   G T F+Q+I   RAL+GE+ 
Sbjct: 83  GTVLVPADKLYDLRIKVAGEG-NLVGQGIGFEIFDDLK-VGQTDFVQKINYQRALQGELI 140

Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI--RAINPSVYKSAEAIRHLVAAA 198
           RTI    G+  ARVH+V+P    F +   +P+ASV++  R       +  +AI +LV  A
Sbjct: 141 RTISEFPGVETARVHLVIPHRSLFIEEQQKPSASVVVKLREGKKMEAQDVQAIVNLVVMA 200

Query: 199 VPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255
           V  +D   V+V D++GK+L   T ++  + +    L     +Q  +E  I + L   +G 
Sbjct: 201 VEGMDRNRVSVADTSGKILYYPTEDDSLQGLTTTQLEYKMRLQQNLERRIEELLYPVIGP 260

Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV 315
               + V A+++   + IR  +YDP+  V RS       QRSE S    A  +E   P  
Sbjct: 261 GKVIAKVNADVDFSQRTIRRELYDPEKTVVRS------EQRSEESTRGRA-NLEAGAPDA 313

Query: 316 SDRKVPLPRSLENTDKKEE--QSNYEINTKSIATTHDNYKLERLSIAVVVN-------KG 366
           + R   +  S    +   E   +N+EIN +      +   L RLS+AV+V+        G
Sbjct: 314 NFRGDGISGSASTQEGTRETRTTNFEINKEEQNIVANVGDLSRLSVAVIVDGTYEKAADG 373

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
             T  + R+A++      +  I ++VS+A G +  RGDT+ + S+ F    L    ++  
Sbjct: 374 TYT-FVPRNAEE------MQRIRQLVSSAVGYDRARGDTVEVNSISFGGPDLPQEASLPQ 426

Query: 427 SFMDILSR 434
            F+D   R
Sbjct: 427 LFLDYALR 434


>gi|239909140|ref|YP_002955882.1| flagellar M-ring protein [Desulfovibrio magneticus RS-1]
 gi|239799007|dbj|BAH77996.1| flagellar M-ring protein [Desulfovibrio magneticus RS-1]
          Length = 547

 Score =  150 bits (378), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 121/433 (27%), Positives = 213/433 (49%), Gaps = 38/433 (8%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
            ++L+Q++ + ++  R   ++LA +    +  F+   F +N P    LY  +   D +R+
Sbjct: 9   FEKLIQYWSNRSAAQR---IMLAGLAASLVAAFVVMLFILNQPDMRVLYTNMPQEDASRV 65

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L  +   + + DNG+++ VP+  V + R+ +A +G+       G+ELFD++   G T
Sbjct: 66  VELLKASKTPYELRDNGATVLVPAEAVYEQRLKVAGEGV-MRGQGIGFELFDELK-VGQT 123

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAIN 181
            F+Q I   RAL+GE+ARTI     +  ARVH+V+P    F +   + TASV+  +R   
Sbjct: 124 DFVQRINYTRALQGELARTISEFPQVEKARVHLVLPHKSLFIEEQKKATASVVLTLRKGQ 183

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ---AIQ 238
               K  + I +LVA +V  L    +TV D+ G+ L     +  + G + +  +     +
Sbjct: 184 KLDAKQLQGIVNLVAMSVEGLTPDHITVTDTAGQSLYQPRGDGGLDGLTTTQFEYKNTFE 243

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
             +E  + + L   LG     + V AEL+   + IR+ +YDP++ V RS + S+++    
Sbjct: 244 SNLENRLEQILTPILGPGRSLAKVNAELDFAQRTIRKELYDPNATVVRSEQKSEESTSGT 303

Query: 299 TSQPESAVTVEQNMPHVSDRKVP----------LPRSLENTDKKEEQSNYEINTKSIATT 348
            +   S VT     P    + VP             S + ++++ + +NYEIN +     
Sbjct: 304 AAVDASGVTT---TPRGGGQAVPNTNFRGEGYSGTESTQKSNRENKTTNYEINKEEQNVV 360

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLG--------RSADQGKIDSYLAEINKIVSAATGINS 400
                L+R SIAV+V+ G   +V G        RSA++      L  I +IV+ A G+++
Sbjct: 361 TPVGDLKRQSIAVIVD-GTYEKVEGTKNWKFVPRSAEE------LERIKQIVARAAGLDA 413

Query: 401 RRGDTITITSMDF 413
            RGD I ++S +F
Sbjct: 414 ARGDEIQVSSFEF 426


>gi|123442764|ref|YP_001006741.1| flagellar MS-ring protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089725|emb|CAL12578.1| flagellar M-ring protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 566

 Score =  150 bits (378), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 133/543 (24%), Positives = 244/543 (44%), Gaps = 61/543 (11%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  SP Y  LY  L   D   I   L++ NI +R +DNG ++ +P+  V + R+ LA Q
Sbjct: 46  LWAKSPDYRVLYSNLNDRDGGDIVTQLTQLNIPYRFADNGGALLIPADKVHETRLRLAQQ 105

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI ++  ++  RVH+ MP 
Sbjct: 106 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIGTLGPVLNVRVHLAMPK 163

Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
              F +    PTASV + A+ P          AI ++V+++V  L   +VTV+D TG+LL
Sbjct: 164 PSLFVREQKSPTASVTL-ALQPGRALDDGQINAIVYMVSSSVAGLPPANVTVVDQTGRLL 222

Query: 218 T-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           T ++   R++    L     +++  +  I   LA  +G  N  + V A+++  +++  + 
Sbjct: 223 TQSDSAGRDLNAAQLKFTNEVENRFQRRIETILAPMVGSGNVHAQVTAQVDFASREQTDE 282

Query: 277 VYDPDSKVERSIRLSKDAQRSE--------------TSQPESAVTVEQNMPHVSDRKVPL 322
            Y P+    +    S+    SE              ++QP +       +P  +      
Sbjct: 283 EYKPNQAANQGAVRSQQVSTSEQLGGTNVGGVPGALSNQPSATPVAPIEIPQATPAAGAG 342

Query: 323 PR--------------SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG-- 366
                           +  +  + ++ +N+E++     T      ++RLS+AVVVN G  
Sbjct: 343 AAANAANRPATAARQTATSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVNYGSD 402

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
           +  + +  S DQ      LA++  +   A G ++ RGDT+ + +  F  N   ++    +
Sbjct: 403 KAGKPIALSKDQ------LAQVESLTREAMGFSTVRGDTLNVVNTPF--NATDDASGSNL 454

Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486
            F    S  F  ++N   +L+  L+   L    +R L  I   ++ +    S+ +    +
Sbjct: 455 PFWQQPS-FFDQLLNIGRYLLILLVAWILWRKLVRPL--IAKKQEADKAAASVNNIVQAA 511

Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546
               T     + +AL   N          Q R+++ V  Q   R+  + + +    A ++
Sbjct: 512 QTTETAKQTKEELALRKKN----------QQRVSAEVQAQ---RIRELADKDPRIVALVI 558

Query: 547 RKW 549
           R+W
Sbjct: 559 RQW 561


>gi|56695122|ref|YP_165469.1| flagellar MS-ring protein [Ruegeria pomeroyi DSS-3]
 gi|56676859|gb|AAV93525.1| flagellar M-ring protein FliF [Ruegeria pomeroyi DSS-3]
          Length = 534

 Score =  150 bits (378), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 160/555 (28%), Positives = 249/555 (44%), Gaps = 59/555 (10%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           SL + +  I+    LV  +  +       SP+   LY  LE      +  +L +  + + 
Sbjct: 10  SLDKKKQFIVIGAALVVFLGVLGLTRMAGSPNMQLLYAGLESGSAGEVVRSLEQQGVPYE 69

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135
           +   G SI VP++   + R+ LA++GLP++    GYEL D ++ FG TS M +    RA 
Sbjct: 70  V--RGGSIYVPAARRDELRLTLASEGLPANGGR-GYELLDSLSGFGTTSQMFDAAYWRAK 126

Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHL 194
           EGE+ARTI +   +  ARVHI       F++    PTASV +      V  + A AIR+L
Sbjct: 127 EGELARTIVASPHVAQARVHIANSSSNPFQR-SIEPTASVSVVPSGSEVTPAQANAIRYL 185

Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLG 254
           VA+AV  +    VTV+DS G          N++G   +   +   +    + + +   + 
Sbjct: 186 VASAVSGMVAEGVTVVDSNG----------NVIGTPETPTSSTSEDRAQQMRERVLRLVE 235

Query: 255 VDNFRSAVVAELNMD----TQQIREIVYDPDSKVERSIRLSK--DAQRSETSQPESAVTV 308
               R   + E+++D    T+ IRE  +DP+ +V  S  + +  DA +++T+     VTV
Sbjct: 236 ARVGRGNAIVEVSLDTVTETESIRERRFDPNGRVAISTDVEERSDASKNQTTD----VTV 291

Query: 309 EQNMPH----VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
             N+P     V D       S  +T    E+ NYE++            ++RLS+AV+VN
Sbjct: 292 ASNLPDGDGAVGD------ESNSSTSATRERVNYEVSETETEILRTPGAIKRLSVAVLVN 345

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF--LENQ--LFN 420
                   G S    + +  LA + ++V +A G N  RGD IT+ SM+   LE Q  L +
Sbjct: 346 GLPGAAQDGSSQFTPRPEEELAALRELVESAVGFNQDRGDVITLKSMELPNLEPQGTLAS 405

Query: 421 SGTVQVSFMDILSR-HFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK-- 477
           S  +Q    D++S    AT+  ALV LV       LGL  +R +       K  V     
Sbjct: 406 SSMLQGLTFDLMSLIQMATL--ALVTLV-------LGLFVVRPILT-----KPAVSAPLL 451

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL---RLLHM 534
           ++  PP  S A + G      I   S  Q+    +   Q      +   S     RL  M
Sbjct: 452 AVAPPPNQSGAQSAGPALTGEIDDGSPRQNQLPGAATQQRGTVPALVGSSGTPVDRLRAM 511

Query: 535 IEINEERFAKILRKW 549
           I   +E   +ILR W
Sbjct: 512 IGDKQEETVEILRSW 526


>gi|71734724|ref|YP_275541.1| flagellar MS-ring protein [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|71555277|gb|AAZ34488.1| flagellar M-ring protein FliF [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 594

 Score =  150 bits (378), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 152/603 (25%), Positives = 258/603 (42%), Gaps = 98/603 (16%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L
Sbjct: 24  LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + ANI++ +  N  ++ V S  V +ARI LA  G+  + +N G+E+ DK    G + FM+
Sbjct: 84  TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINP 182
                R LEGE+ARTI +++ +  ARVH+ +P    F +   +P+ASV++     R++ P
Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHE 240
           S      AI +LVA +VP L    +TV+D  G LL+  A   E  + GK     + ++  
Sbjct: 204 S---QVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGM 260

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           +   +   L   LG D +++ V A ++    +     ++PD    RS + S + QRS +S
Sbjct: 261 LTQRVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQ-SVNEQRSSSS 319

Query: 301 -----------QPESAVTVEQNM----------------------PHVSDRKVPLPRSLE 327
                      QP    T  QN                         + D     P    
Sbjct: 320 STGGVPGALSNQPPGPATAPQNATAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAP 379

Query: 328 NTDKKEEQS--NYEINTKSIATTHDNYKLERLSIAVVVN--------KGRLTEVLGRSAD 377
               K  QS  N+E++     T     +L RLS+AVVV+         G +T     +AD
Sbjct: 380 YPADKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAAD 439

Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF-------LENQLFNSGTVQVSFMD 430
                  LA   ++V  A G ++ RGD++++ ++ F       L    F S   Q  F D
Sbjct: 440 -------LARFTRLVQDAVGFDASRGDSVSVINVPFSIERAEVLPEASFYS---QPWFWD 489

Query: 431 ILSRHFATVINALVFLVGTL--LVTFLGLHALRRLHNI-DDAKKGEVGGKSILSPPPISS 487
           I+ +    VI  L+ + G L  ++T +     + L     DA+ G +GG           
Sbjct: 490 IV-KQAVGVIFILILVFGVLRPVLTNITTGKSKELAGFGGDAELGGMGG----------- 537

Query: 488 AVTTGLMPNDNIALDSSNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546
               G + ND ++L      +  S +    +++N+  S         ++  +  R A+++
Sbjct: 538 --LDGELSNDRVSLGGPQSILLPSPTEGYDAQLNAIKS---------LVAEDPGRVAQVV 586

Query: 547 RKW 549
           ++W
Sbjct: 587 KEW 589


>gi|51596039|ref|YP_070230.1| flagellar MS-ring protein [Yersinia pseudotuberculosis IP 32953]
 gi|51589321|emb|CAH20942.1| flagellar M-ring protein [Yersinia pseudotuberculosis IP 32953]
          Length = 570

 Score =  150 bits (378), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 141/551 (25%), Positives = 256/551 (46%), Gaps = 73/551 (13%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  SP Y  LY  L   D   I   L++ NI +R +DNG ++ +P+  V + R+ LA Q
Sbjct: 46  LWAKSPDYRVLYSNLSDRDGGDIVTQLTQLNIPYRFADNGGALLIPAEKVHETRLRLAQQ 105

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F ++I   RALEGE++RTI ++  ++  RVH+ MP 
Sbjct: 106 GLPKGGA-VGFELLDQ-EKFGISQFSEQINYQRALEGELSRTIGTLGPVLNVRVHLAMPK 163

Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
              F +    PTASV + A+ P          AI ++V+++V  L  G+VTV+D TG+LL
Sbjct: 164 PSLFVREQKSPTASVTL-ALQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLL 222

Query: 218 T-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           T ++   R++    L     +++  +  I   LA  +G  N  + V A+++  +++  + 
Sbjct: 223 TQSDSAGRDLNASQLKFTSEVENRYQRRIENILAPMVGNGNVHAQVTAQVDFASREQTDE 282

Query: 277 VYDPDSKVE----RSIRLSKDAQRSETS--QPESAVTVEQNMPHVSDRKVPLPRSL---- 326
            Y P+        RS ++S   Q   T+      A++ +  +  ++  ++P P       
Sbjct: 283 EYKPNQAANQGAVRSQQVSTSEQLGGTNVGGVPGALSNQPPVAPIAPIEIPQPAGAAANN 342

Query: 327 ----------------------ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
                                  +  + ++ +N+E++     T      ++RLS+AVVVN
Sbjct: 343 AAPANAATTANANTTATAAKASSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVN 402

Query: 365 --KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
               +  + +  S DQ      LA++  +   A G ++ RGDT+ + +  F  +      
Sbjct: 403 YTSDKAGKPIALSKDQ------LAQVESLTREAMGFSTVRGDTLNVVNTPFTASDDTRGS 456

Query: 423 TV----QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
           ++    Q SF D L       +NA  +L+  L+   L    LR +     AKK +V  K+
Sbjct: 457 SLPFWQQQSFFDQL-------LNAGRYLLILLVAWILWRKLLRPML----AKK-QVADKA 504

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
             S   +++ V T         +  S +++    +N Q R+++ V  Q   R+  + + +
Sbjct: 505 AAS---VNNIVQTAQAAE---TVKQSKEELALRKKN-QQRVSAEVQAQ---RIRELADKD 554

Query: 539 EERFAKILRKW 549
               A ++R+W
Sbjct: 555 PRVVALVIRQW 565


>gi|22126359|ref|NP_669782.1| flagellar MS-ring protein [Yersinia pestis KIM 10]
 gi|45441380|ref|NP_992919.1| flagellar MS-ring protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|108807202|ref|YP_651118.1| flagellar MS-ring protein [Yersinia pestis Antiqua]
 gi|108812454|ref|YP_648221.1| flagellar MS-ring protein [Yersinia pestis Nepal516]
 gi|145598582|ref|YP_001162658.1| flagellar MS-ring protein [Yersinia pestis Pestoides F]
 gi|149366222|ref|ZP_01888257.1| flagellar M-ring protein [Yersinia pestis CA88-4125]
 gi|153947408|ref|YP_001401259.1| flagellar MS-ring protein [Yersinia pseudotuberculosis IP 31758]
 gi|162421303|ref|YP_001606485.1| flagellar MS-ring protein [Yersinia pestis Angola]
 gi|165926013|ref|ZP_02221845.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165938662|ref|ZP_02227217.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166010885|ref|ZP_02231783.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166210437|ref|ZP_02236472.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167401031|ref|ZP_02306534.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167420343|ref|ZP_02312096.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167425776|ref|ZP_02317529.1| flagellar M-ring protein FliF [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|167468921|ref|ZP_02333625.1| flagellar M-ring protein FliF [Yersinia pestis FV-1]
 gi|218928951|ref|YP_002346826.1| flagellar MS-ring protein [Yersinia pestis CO92]
 gi|229897213|ref|ZP_04512369.1| flagellar M-ring protein [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229897940|ref|ZP_04513091.1| flagellar M-ring protein [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229902829|ref|ZP_04517946.1| flagellar M-ring protein [Yersinia pestis Nepal516]
 gi|270486615|ref|ZP_06203689.1| flagellar M-ring protein FliF [Yersinia pestis KIM D27]
 gi|294504003|ref|YP_003568065.1| flagellar M-ring protein [Yersinia pestis Z176003]
 gi|21959343|gb|AAM86033.1|AE013851_5 basal-body MS (membrane and supramembrane)-ring and collar protein
           [Yersinia pestis KIM 10]
 gi|45436240|gb|AAS61796.1| flagellar M-ring protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|108776102|gb|ABG18621.1| flagellar M-ring protein [Yersinia pestis Nepal516]
 gi|108779115|gb|ABG13173.1| flagellar M-ring protein [Yersinia pestis Antiqua]
 gi|115347562|emb|CAL20471.1| flagellar M-ring protein [Yersinia pestis CO92]
 gi|145210278|gb|ABP39685.1| flagellar M-ring protein [Yersinia pestis Pestoides F]
 gi|149292635|gb|EDM42709.1| flagellar M-ring protein [Yersinia pestis CA88-4125]
 gi|152958903|gb|ABS46364.1| flagellar M-ring protein FliF [Yersinia pseudotuberculosis IP
           31758]
 gi|162354118|gb|ABX88066.1| flagellar M-ring protein FliF [Yersinia pestis Angola]
 gi|165913276|gb|EDR31898.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165922217|gb|EDR39394.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165990229|gb|EDR42530.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166207617|gb|EDR52097.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166962038|gb|EDR58059.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167049420|gb|EDR60828.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167055175|gb|EDR64972.1| flagellar M-ring protein FliF [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|229680276|gb|EEO76375.1| flagellar M-ring protein [Yersinia pestis Nepal516]
 gi|229688981|gb|EEO81046.1| flagellar M-ring protein [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229693550|gb|EEO83599.1| flagellar M-ring protein [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|262361812|gb|ACY58533.1| flagellar M-ring protein [Yersinia pestis D106004]
 gi|270335119|gb|EFA45896.1| flagellar M-ring protein FliF [Yersinia pestis KIM D27]
 gi|294354462|gb|ADE64803.1| flagellar M-ring protein [Yersinia pestis Z176003]
 gi|320015431|gb|ADV99002.1| flagellar M-ring protein [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 570

 Score =  150 bits (378), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 141/551 (25%), Positives = 256/551 (46%), Gaps = 73/551 (13%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  SP Y  LY  L   D   I   L++ NI +R +DNG ++ +P+  V + R+ LA Q
Sbjct: 46  LWAKSPDYRVLYSNLSDRDGGDIVTQLTQLNIPYRFADNGGALLIPAEKVHETRLRLAQQ 105

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F ++I   RALEGE++RTI ++  ++  RVH+ MP 
Sbjct: 106 GLPKGGA-VGFELLDQ-EKFGISQFSEQINYQRALEGELSRTIGTLGPVLNVRVHLAMPK 163

Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
              F +    PTASV + A+ P          AI ++V+++V  L  G+VTV+D TG+LL
Sbjct: 164 PSLFVREQKSPTASVTL-ALQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLL 222

Query: 218 T-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           T ++   R++    L     +++  +  I   LA  +G  N  + V A+++  +++  + 
Sbjct: 223 TQSDSAGRDLNASQLKFTSEVENRYQRRIENILAPMVGNGNVHAQVTAQVDFASREQTDE 282

Query: 277 VYDPDSKVE----RSIRLSKDAQRSETS--QPESAVTVEQNMPHVSDRKVPLPRSL---- 326
            Y P+        RS ++S   Q   T+      A++ +  +  ++  ++P P       
Sbjct: 283 EYKPNQAANQGAVRSQQVSTSEQLGGTNVGGVPGALSNQPPVAPIAPIEIPQPAGAAANN 342

Query: 327 ----------------------ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
                                  +  + ++ +N+E++     T      ++RLS+AVVVN
Sbjct: 343 AAPANTAATANANTTATAAKASSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVN 402

Query: 365 --KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
               +  + +  S DQ      LA++  +   A G ++ RGDT+ + +  F  +      
Sbjct: 403 YTSDKAGKPIALSKDQ------LAQVESLTREAMGFSTVRGDTLNVVNTPFTASDDTRGS 456

Query: 423 TV----QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
           ++    Q SF D L       +NA  +L+  L+   L    LR +     AKK +V  K+
Sbjct: 457 SLPFWQQQSFFDQL-------LNAGRYLLILLVAWILWRKLLRPML----AKK-QVADKA 504

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
             S   +++ V T         +  S +++    +N Q R+++ V  Q   R+  + + +
Sbjct: 505 AAS---VNNIVQTAQAAE---TVKQSKEELALRKKN-QQRVSAEVQAQ---RIRELADKD 554

Query: 539 EERFAKILRKW 549
               A ++R+W
Sbjct: 555 PRVVALVIRQW 565


>gi|74317618|ref|YP_315358.1| flagellar MS-ring protein [Thiobacillus denitrificans ATCC 25259]
 gi|74057113|gb|AAZ97553.1| flagellar M-ring protein FliF [Thiobacillus denitrificans ATCC
           25259]
          Length = 548

 Score =  149 bits (377), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 123/439 (28%), Positives = 209/439 (47%), Gaps = 31/439 (7%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M +   +++F +  T+ GR  +L+L     V   +  A   +   P Y  L+      D 
Sbjct: 7   MVVPGNVMEFTR--TAGGRKILLMLGVAASV--AVMAAVWMWGQQPEYRVLFSNFSDRDG 62

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L + N+ ++ ++ G ++ VP+  V  AR+ LA+QGLP    N G+EL +     
Sbjct: 63  GAIVAELEKMNVPYKYAEGGGAVLVPADRVHDARLKLASQGLPKGG-NVGFELMEN-QRL 120

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI--- 177
           G + F++++   RA+EGE+AR+I+S+S + AARVH+ +P    F     +PTASV++   
Sbjct: 121 GASQFVEQVNFQRAMEGELARSIESVSAVQAARVHLALPKDSIFVSEQKQPTASVLLNLH 180

Query: 178 --RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMER-NILGKS-LS 232
             RA++P   +   AI HLVA++VP L   +VTV+D  G LL+ A +  R N +  S + 
Sbjct: 181 PGRALDP---QQVSAIVHLVASSVPELATKNVTVVDQNGNLLSDAGKAPRVNGMDPSQIK 237

Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD----PDSKVERSI 288
            VQ +Q ++   I   +   +G  N R+   A+++    +     Y     PD+   RS 
Sbjct: 238 YVQELQQDVVQRIESIITPIVGPGNVRAEATADVDFSRSEQAVESYKPNQTPDAMAIRSQ 297

Query: 289 RLSKDAQRSET---------SQPESAVTVEQNMP-HVSDRKVPLPRSLENTDKKEEQSNY 338
           + S+    S           +QP +  T    +P   +            + +K+   NY
Sbjct: 298 QTSESLNGSANPAGVPGALINQPPAPATAPITVPGQATPAPAAAAAQPATSTRKDATVNY 357

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++            L+RLS+ VVVN  +  +  G+ A +   ++   +I  +V  A G 
Sbjct: 358 EVDKTIQYVQQAGGGLKRLSVGVVVNYKKTVDKAGKVAMKPLSEAEKTQITNLVKEAMGY 417

Query: 399 NSRRGDTITITSMDFLENQ 417
           N  RGDT+ + +  F   Q
Sbjct: 418 NQARGDTVNVVNSPFASAQ 436


>gi|324018846|gb|EGB88065.1| flagellar M-ring protein FliF [Escherichia coli MS 117-3]
          Length = 512

 Score =  149 bits (377), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 114/398 (28%), Positives = 187/398 (46%), Gaps = 38/398 (9%)

Query: 43  VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL 102
            N P Y  L+  L   D   I   L++ NI +R S+   +I VP+  V + R+ LA QGL
Sbjct: 3   ANPPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGAIEVPAEKVHELRLRLAQQGL 62

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162
           P   +  G+EL D+   FG++ F +++   RALEGE++RTI +I  +  ARVH+ MP   
Sbjct: 63  PKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRTIATIGPVKGARVHLAMPKPS 120

Query: 163 SFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-A 219
            F +    P+ASV +  +        +  AI HLV++AV  L  G+VT++D  G LLT +
Sbjct: 121 LFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQS 180

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
           N   R++    L     ++  I+  I   L+  +G  N  + V A+L+  +++  E  Y 
Sbjct: 181 NTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYR 240

Query: 280 PDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ- 335
           P+     +   S+    SE S    P        N P  ++   P+     N + +++Q 
Sbjct: 241 PNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPAN-NAPISTPPANQNNRQQQA 299

Query: 336 ----------------SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQG 379
                           SNYE++     T  +   ++RLS+AVVVN   L +        G
Sbjct: 300 STTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPD--------G 351

Query: 380 KI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           K     +  + +I  +   A G + +RGD++ + +  F
Sbjct: 352 KPLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 389


>gi|194292866|ref|YP_002008773.1| flagellar ms-ring protein [Cupriavidus taiwanensis LMG 19424]
 gi|193226770|emb|CAQ72721.1| FliF: Flagellar biosynthesis protein, M-ring protein, Belongs to
           the fliF family [Cupriavidus taiwanensis LMG 19424]
          Length = 576

 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 113/429 (26%), Positives = 194/429 (45%), Gaps = 68/429 (15%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  LY  L   D   +  +L + N+ ++ ++ G ++ VP+  V + R+ LA+Q
Sbjct: 42  LWSRGPDYKVLYSNLSERDGGAVLQSLQQMNVPYKFAEGGGAVMVPAEKVHETRLRLASQ 101

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP S + +G EL D    FG++ F +++   R LEGE+AR+I+SI+ + +ARVH+ +P 
Sbjct: 102 GLPKSGT-AGMELMDN-QKFGISQFAEQVNYQRGLEGELARSIESIAAVQSARVHLAIPK 159

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +   +PTAS+++     RAI+        AI HLV+++VP L    ++++D  G 
Sbjct: 160 PTLFVRERQKPTASIVLQLYPGRAID---EGQVAAISHLVSSSVPELTPKSISIVDQHGN 216

Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LL+    ER +    L  VQA++      I   L   +G DN R+ V A+++    +  +
Sbjct: 217 LLSNTGNERMLDATQLKYVQALEQNYLKRIEAILTPIVGKDNVRAQVTADVDFSIVEHTD 276

Query: 276 IVY----DPDSKVERSIRLSKDAQRSET----------SQPESAVTVEQNMPHVSDRKVP 321
             Y    DP     RS + S+  Q+  T          +QP +A       P        
Sbjct: 277 ESYKPNQDPTRTAIRSQQTSESTQQGATPPGGVPGALSNQPPAAAVAPVTTPQT------ 330

Query: 322 LPR-------------------------------------SLENTDKKEEQSNYEINTKS 344
            PR                                     S  ++++++   NYE++   
Sbjct: 331 -PRAGQAPGQAGAPGAGQPGQPGQAGQAGQAAQGATATASSGPSSNRRDSTVNYELDRSV 389

Query: 345 IATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD 404
                    + RLS+AVVVN  +  +  G+   +    + LA+I  +   A G ++ RGD
Sbjct: 390 RHVQQAPGGVRRLSVAVVVNYRQQADAKGKLVAEPLPPALLAQIQNLTKEAMGFSAERGD 449

Query: 405 TITITSMDF 413
           +I + +  F
Sbjct: 450 SINVVNSPF 458


>gi|104782821|ref|YP_609319.1| flagellar MS-ring protein [Pseudomonas entomophila L48]
 gi|95111808|emb|CAK16532.1| flagellar basal-body M-ring protein FliF [Pseudomonas entomophila
           L48]
          Length = 592

 Score =  149 bits (376), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 140/573 (24%), Positives = 249/573 (43%), Gaps = 91/573 (15%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92
           + +  A   +   P Y  LY  L   D  ++   L+ A+I + +  N  ++ V +  + +
Sbjct: 50  VAIGFAVVLWSQQPDYRPLYGSLAGMDTKQVMDTLASADIPYHVEPNSGALLVKADDLSR 109

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
           AR+ LAA G+  S  N G+EL DK    G + FM+     R+LEGE+ART+ S++ + AA
Sbjct: 110 ARLKLAAAGVAPSDGNVGFELLDKEQGLGTSQFMETTRYRRSLEGELARTVSSLNNVKAA 169

Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVL 210
           RVH+ +P    F +   +P+ASV++        ++ +  AI +LVA +VP LD   VTV+
Sbjct: 170 RVHLAIPKSSVFVRDERKPSASVLVELYPGRALEAGQVMAIVNLVATSVPELDKSQVTVV 229

Query: 211 DSTGKLLTANEMERNIL---GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELN 267
           D  G LL+ ++++   L   GK     + ++  +   ++  L   LG D +++ V A+++
Sbjct: 230 DQKGNLLS-DQLQDTALSMAGKQFDYSRRMEGLLTQRVHNILQPVLGNDRYKAEVSADVD 288

Query: 268 MDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP-------------- 313
               +     ++PD    RS + S + QR+ +  P+       N P              
Sbjct: 289 FSAVESTSEQFNPDQPALRSEQ-SVNEQRASSQGPQGVPGALSNQPPAGASAPENARAAA 347

Query: 314 ------------------HVSDRKVPLPRSLENTDKKEEQS--NYEINTKSIATTHDNYK 353
                              + D     P        K +QS  N+E++     T     +
Sbjct: 348 TPAGAIQPGQPLVDANGQQIMDPATGQPMLAPYPSDKRQQSTKNFELDRSISHTRQQQGR 407

Query: 354 LERLSIAVVVN-KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
           L RLS+AVVV+ + +L    G +         LA   ++V  A G ++ RGD++T+ ++ 
Sbjct: 408 LTRLSVAVVVDDQVKLDAASGEATRTPWGAEDLARFTRLVQDAVGFDASRGDSVTVINVP 467

Query: 413 FLENQ-------LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR-LH 464
           F  ++        F S   Q  F DI+ +           ++G L +  L    LR  L 
Sbjct: 468 FAADRGDELVDIPFYS---QPWFWDIVKQ-----------VLGVLFILVLVFGVLRPVLT 513

Query: 465 NIDDAKKG-------EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF-SHSRNLQ 516
           NI    K        E+GG   L           G + ND ++L      +  S S   +
Sbjct: 514 NITGGGKQAATDSDMELGGMIGLD----------GELANDRVSLGGPTSILLPSPSEGYE 563

Query: 517 SRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549
           +++N+         +  ++  +  R A+++++W
Sbjct: 564 AQLNA---------IKGLVAEDPGRVAQVVKEW 587


>gi|95929849|ref|ZP_01312590.1| flagellar M-ring protein FliF [Desulfuromonas acetoxidans DSM 684]
 gi|95134145|gb|EAT15803.1| flagellar M-ring protein FliF [Desulfuromonas acetoxidans DSM 684]
          Length = 521

 Score =  149 bits (376), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 124/408 (30%), Positives = 201/408 (49%), Gaps = 27/408 (6%)

Query: 20  TRILILASVILVPIMLFMAARFFVNSPH--YDNLYVKLEVSDVNRISVALSEANIDFRIS 77
           +R + L +V L  + LF  A   + + H  Y  L+  L  +D + I   L E  + + + 
Sbjct: 19  SRKISLIAVTLFSLTLF--ALIIMQARHTDYQLLFANLSENDASSIVTWLKEQKVPYELR 76

Query: 78  DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137
             G S+ VP+  V + R+ LA  GLP      G+E+FDK  S G+T F+Q++  +RA++G
Sbjct: 77  SGGQSVYVPADRVYETRLDLAGAGLPQGG-GVGFEIFDK-QSLGITDFVQKVNYLRAMQG 134

Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLV 195
           E++RT+ S+S + AARVH+ +P    F+    R TAS++++       K A  + I +LV
Sbjct: 135 ELSRTVASLSPVSAARVHLALPQKRLFKSEQQRVTASIIVKLAPGRTLKEAQVQGIVNLV 194

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEME---RNILGKSLSIVQAIQHEIEMNINKALAAF 252
           A +V  LD   VTV+D+ GK+L+    E     +    L   +A++ ++E      L   
Sbjct: 195 AGSVEGLDSDYVTVVDAAGKVLSKKPDEGLSGPMTPGMLEYQRAVERQMESRAQAMLDRA 254

Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNM 312
           LG+ N    V A L+    +  E +YDP S V RS +L +        Q E + TV   +
Sbjct: 255 LGMANSLVKVTAVLDFAQVEKLEELYDPKSAVPRSEQLQE--------QKEGSSTVGGGV 306

Query: 313 PHVSDRKVP----LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368
           P V     P          N+    E +NYEI+     T      ++ LS++V+V   ++
Sbjct: 307 PGVQANLGPGVNSAGGGGSNSTSSAETTNYEISKVVNRTVAPVGTIKHLSVSVLVAD-KM 365

Query: 369 TEVLGRSADQG---KIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           T+     A+     + +  L  I K+V +A GI+  RGD + + SM F
Sbjct: 366 TDGEEDGAEPALTPRSEQELRTIEKMVQSALGIDKTRGDQLNVVSMPF 413


>gi|224370787|ref|YP_002604951.1| FliF [Desulfobacterium autotrophicum HRM2]
 gi|223693504|gb|ACN16787.1| FliF [Desulfobacterium autotrophicum HRM2]
          Length = 571

 Score =  149 bits (376), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 120/428 (28%), Positives = 202/428 (47%), Gaps = 27/428 (6%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +++Q +  +K    +   R +++  V+L     F A   + N   Y + Y  L   D   
Sbjct: 4   LVEQTINLYKE---MPLARKILMGVVVLAMFGGFAAMFIWANKTEYKSAYSGLNQEDAAA 60

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L  A   +RI   G++I VP+  V   R+ +A  G+P  S   G+E+FDK + FG 
Sbjct: 61  IVDRLKTAKTPYRIEAGGATIMVPADQVYDVRLSMAKDGIPKGS-GVGFEIFDKTD-FGT 118

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T F+Q+I R RA++GE+ARTI++   +  ARV IV P    F +   +P+AS+++   + 
Sbjct: 119 TEFVQKINRRRAIQGELARTIRAFDEVKDARVMIVFPKDSVFVEETKKPSASILLELKSD 178

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--------RNILGKSLSIV 234
                  A+ HLVA+A+ +L    VT++D+TG++L   + E        RN+        
Sbjct: 179 LSEDKVAAVAHLVASAIEDLTPKLVTIVDTTGRILFEGKSEEEKAKIDARNLADSQYKYK 238

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD- 293
              +  +   I   L   +G D     V AE++  T    E +YDP  +    +R SK  
Sbjct: 239 MRYETTLAERIQTMLERIVGKDKAIVRVTAEMDFSTSNTNEEIYDPFERETTFVR-SKQI 297

Query: 294 -AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
            A+  +T Q  + +    N P V         ++E TDKK +  NYE++ ++  T     
Sbjct: 298 LAETGQTRQDSAGIPSSVN-PVVPPGGTADASAMEMTDKKNDTINYELSRRTRQTIKPMA 356

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSY-------LAEINKIVSAATGINSRRGDT 405
            ++R+S+A VV+ G+       S ++ K  +Y       + + + IV  A G N  R D 
Sbjct: 357 VVQRVSVAAVVD-GKYEFKTDDSGNRSK--TYVPRSQVEMQQFSDIVVKAMGFNETRQDQ 413

Query: 406 ITITSMDF 413
           +++    F
Sbjct: 414 VSMECFPF 421


>gi|73538922|ref|YP_299289.1| flagellar MS-ring protein [Ralstonia eutropha JMP134]
 gi|72122259|gb|AAZ64445.1| Flagellar FliF M-ring protein [Ralstonia eutropha JMP134]
          Length = 568

 Score =  149 bits (376), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 109/419 (26%), Positives = 194/419 (46%), Gaps = 55/419 (13%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  LY  L   D   +  +L + N+ ++ ++ G ++ VP+  V + R+ LA+Q
Sbjct: 42  LWSRAPDYKVLYSNLSERDGGAVLQSLQQMNVPYKFAEGGGAVMVPAEKVHETRLRLASQ 101

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP S + +G EL D    FG++ F +++   R LEGE+AR+I+SI+ + +ARVH+ +P 
Sbjct: 102 GLPKSGT-TGLELMDN-QKFGISQFAEQVNYQRGLEGELARSIESIAAVQSARVHLAIPK 159

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +   +PTAS+++     RAI+        AI HLV+++VP L    ++++D  G 
Sbjct: 160 PTLFVRERQKPTASIVLQLYPGRAID---EGQVAAISHLVSSSVPELTPKAISIVDQHGN 216

Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LL+ +  ER +    L  VQA++      I   L   +G DN R+ V A+++    +  +
Sbjct: 217 LLSNSGNERMLDATQLKYVQALEQNYLKRIESILTPIVGKDNVRAQVTADVDFSIVEHTD 276

Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSL--------- 326
             Y P+     +   S+  Q SE++Q     T    +P     + P P +          
Sbjct: 277 ESYKPNQDPTHAAIRSQ--QTSESNQ--QGATPPGGVPGALSNQPPAPATAPITTAQTPR 332

Query: 327 --------------------------------ENTDKKEEQSNYEINTKSIATTHDNYKL 354
                                            ++++++   NYE++            +
Sbjct: 333 AGQAPGQAGAPAQPQGAQAGQAQAATSTASTGPSSNRRDSTVNYELDRTVRHVQQAPGGV 392

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
            RLS+AVVVN  +  +  G+   Q    + LA+I  +     G ++ RGD+I + +  F
Sbjct: 393 RRLSVAVVVNYRQQADAKGKMVAQPLPPALLAQIENLTKETMGFSADRGDSINVVNSPF 451


>gi|327481269|gb|AEA84579.1| flagellar MS-ring protein [Pseudomonas stutzeri DSM 4166]
          Length = 594

 Score =  149 bits (376), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 143/601 (23%), Positives = 267/601 (44%), Gaps = 94/601 (15%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  L   L   D N++   L
Sbjct: 24  LSFLENLSEMSMLRQIGLLVGLAASVAMGFAVVLWSQQPDYRPLLGSLAGMDANQVMETL 83

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + A+I + +  N  ++ V ++ + +AR+ LA  G+  + SN G+E+ DK    G + FM+
Sbjct: 84  AAADIAYTVEPNSGALLVKANDLARARLKLAGAGIAPADSNIGFEILDKDQGLGTSQFME 143

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINP 182
                R LEGE+ RTI S++ +  ARVH+ +P    F +   +P+ASV++     RA+ P
Sbjct: 144 ATRYRRGLEGELGRTISSLNNVKGARVHLAIPKSSVFVRDERKPSASVLVELYPGRALEP 203

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHE 240
           S      AI +LVA +VP L+   +TV+D  G LL+  +   E ++ GK     + ++  
Sbjct: 204 S---QVMAIINLVATSVPELNKSQITVVDQKGNLLSDQQELTELSMAGKQFDYSRRMESL 260

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               ++  L   LG   +++ V A+++    +     ++PD    RS + S + QR  + 
Sbjct: 261 YTQRVHNILQPVLGSGRYKAEVSADVDFSAVESTSETFNPDQPALRSEQ-SVNEQRQSSL 319

Query: 301 QPESAVTVEQNMP------------------------------------HVSDRKV--PL 322
            P+       N P                                     V+ + +  P 
Sbjct: 320 PPQGVPGALSNQPPGPASAPEQANQAAAAAGAVAPGQPLVDANGQQIMDPVTGQPMLAPF 379

Query: 323 PRSLENTDKKEEQS-NYEINTKSIATTHDNYKLERLSIAVVVN-------KGRLTEVLGR 374
           P      DK+E+ + NYE++     T   + +L RLS+AVVV+        G +  V   
Sbjct: 380 P-----ADKREQATRNYELDRSISYTKQQHGRLRRLSVAVVVDDQMSLNAAGEMVRVPWN 434

Query: 375 SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSR 434
           + D       LA   ++V  A G ++ RGD++++ +  F+ +  F     ++ F      
Sbjct: 435 ADD-------LARFTRLVQDAVGFDASRGDSVSVINTAFVADS-FGETFEEIPFYS--QP 484

Query: 435 HFATVINALVFLVGTLLVTFLGLHA-LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493
            F  V+  ++ ++  L++ F  L   L+ L N +  K+ +V G       P       GL
Sbjct: 485 WFWDVVKQVLGVLFILVLVFGVLRPVLKSLTNPNAGKELQVAGM------PGELGEDEGL 538

Query: 494 ---MPNDNIALDSSNQDIF--SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRK 548
              + ND ++L S  Q+I   S S   ++++N+         + +++  +  R A+++++
Sbjct: 539 DGGLANDRVSL-SGPQNILLPSPSEGYEAQLNA---------IKNLVADDPGRVAQVVKE 588

Query: 549 W 549
           W
Sbjct: 589 W 589


>gi|146282929|ref|YP_001173082.1| flagellar MS-ring protein [Pseudomonas stutzeri A1501]
 gi|145571134|gb|ABP80240.1| flagellar M-ring protein [Pseudomonas stutzeri A1501]
          Length = 585

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 143/601 (23%), Positives = 267/601 (44%), Gaps = 94/601 (15%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  L   L   D N++   L
Sbjct: 15  LSFLENLSEMSMLRQIGLLVGLAASVAMGFAVVLWSQQPDYRPLLGSLAGMDANQVMETL 74

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + A+I + +  N  ++ V ++ + +AR+ LA  G+  + SN G+E+ DK    G + FM+
Sbjct: 75  AAADIAYTVEPNSGALLVKANDLARARLKLAGAGIAPADSNIGFEILDKDQGLGTSQFME 134

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINP 182
                R LEGE+ RTI S++ +  ARVH+ +P    F +   +P+ASV++     RA+ P
Sbjct: 135 ATRYRRGLEGELGRTISSLNNVKGARVHLAIPKSSVFVRDERKPSASVLVELYPGRALEP 194

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHE 240
           S      AI +LVA +VP L+   +TV+D  G LL+  +   E ++ GK     + ++  
Sbjct: 195 S---QVMAIINLVATSVPELNKSQITVVDQKGNLLSDQQELTELSMAGKQFDYSRRMESL 251

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               ++  L   LG   +++ V A+++    +     ++PD    RS + S + QR  + 
Sbjct: 252 YTQRVHNILQPVLGSGRYKAEVSADVDFSAVESTSETFNPDQPALRSEQ-SVNEQRQSSL 310

Query: 301 QPESAVTVEQNMP------------------------------------HVSDRKV--PL 322
            P+       N P                                     V+ + +  P 
Sbjct: 311 PPQGVPGALSNQPPGPASAPEQANQAAAAAGAVAPGQPLVDANGQQIMDPVTGQPMLAPF 370

Query: 323 PRSLENTDKKEEQS-NYEINTKSIATTHDNYKLERLSIAVVVNK-------GRLTEVLGR 374
           P      DK+E+ + NYE++     T   + +L RLS+AVVV+        G +  V   
Sbjct: 371 P-----ADKREQATRNYELDRSISYTKQQHGRLRRLSVAVVVDDQMSLNAAGEMVRVPWN 425

Query: 375 SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSR 434
           + D       LA   ++V  A G ++ RGD++++ +  F+ +  F     ++ F      
Sbjct: 426 ADD-------LARFTRLVQDAVGFDASRGDSVSVINTAFVADS-FGETFEEIPFYS--QP 475

Query: 435 HFATVINALVFLVGTLLVTFLGLHA-LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493
            F  V+  ++ ++  L++ F  L   L+ L N +  K+ +V G       P       GL
Sbjct: 476 WFWDVVKQVLGVLFILVLVFGVLRPVLKSLTNPNAGKELQVAGM------PGELGEDEGL 529

Query: 494 ---MPNDNIALDSSNQDIF--SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRK 548
              + ND ++L S  Q+I   S S   ++++N+         + +++  +  R A+++++
Sbjct: 530 DGGLANDRVSL-SGPQNILLPSPSEGYEAQLNA---------IKNLVADDPGRVAQVVKE 579

Query: 549 W 549
           W
Sbjct: 580 W 580


>gi|302185562|ref|ZP_07262235.1| flagellar MS-ring protein [Pseudomonas syringae pv. syringae 642]
          Length = 594

 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 148/579 (25%), Positives = 248/579 (42%), Gaps = 100/579 (17%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92
           + +  A   +   P Y  LY  L   D  +I   L+ ANI++ +  N  ++ V S  V +
Sbjct: 49  VAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTLTAANINYTVEPNSGALLVKSDDVQR 108

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
           ARI LA  G+  + +N G+E+ DK    G + FM+     R LEGE+ARTI +++ +  A
Sbjct: 109 ARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFMEATRYRRGLEGELARTISALNNVKGA 168

Query: 153 RVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDV 207
           RVH+ +P    F +   +P+ASV++     R++ PS      AI +LVA +VP L    +
Sbjct: 169 RVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEPS---QVMAIINLVATSVPELSKSQI 225

Query: 208 TVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE 265
           TV+D  G LL+  A   E  + GK     + ++  +   +   L   LG D +++ V A 
Sbjct: 226 TVVDQKGALLSDQAENSELTMAGKQFDYSRRMESMLTQRVQNILQPILGNDRYKAEVSAV 285

Query: 266 LNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE-----------TSQPESAVTVEQ---- 310
           ++    +     ++PD    RS + S + QRS            ++QP    T  Q    
Sbjct: 286 VDFSAVESTAESFNPDQPALRSEQ-SVNEQRSSGSSSGGVPGALSNQPPGPATAPQTAGG 344

Query: 311 ------------------NMPHVSDRKVPLPRSLENTDKKEEQS--NYEINTKSIATTHD 350
                             N   + D     P        K  QS  N+E++     T   
Sbjct: 345 GAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPADKRVQSTKNFELDRSISHTKQQ 404

Query: 351 NYKLERLSIAVVVN--------KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402
             +L RLS+AVVV+         G +T     +AD       LA   ++V  A G ++ R
Sbjct: 405 QGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAAD-------LARFTRLVQDAVGFDASR 457

Query: 403 GDTITITSMDF-------LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455
           GD++++ ++ F       L    F S   Q  F DI+ +            VG + +  L
Sbjct: 458 GDSVSVINVPFSSERAEVLPEASFYS---QPWFWDIVKQA-----------VGVIFILIL 503

Query: 456 GLHALRR-LHNIDDAKKGEV---GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF-S 510
               LR  L+NI + K+ E+   GG + L           G + ND ++L      +  S
Sbjct: 504 VFGVLRPVLNNITNGKRKELAGFGGDAELG----GMGGLDGELSNDRVSLGGPQSILLPS 559

Query: 511 HSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549
            +    +++N+  S         ++  +  R A+++++W
Sbjct: 560 PTEGYDAQLNAIKS---------LVAEDPGRVAQVVKEW 589


>gi|268589960|ref|ZP_06124181.1| flagellar M-ring protein FliF [Providencia rettgeri DSM 1131]
 gi|291314677|gb|EFE55130.1| flagellar M-ring protein FliF [Providencia rettgeri DSM 1131]
          Length = 561

 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 115/394 (29%), Positives = 201/394 (51%), Gaps = 26/394 (6%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            ++ SP Y  L   L   D   I   L++ N+ ++I+DNGS+I VP+  V + R+ LA  
Sbjct: 46  LWLRSPDYRVLLSNLSAKDGGDIVGQLTQMNVPYQIADNGSAILVPADKVHELRLKLAQS 105

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP    N+G+EL DK   FG++ F ++I   RALEGE++RTI+S+S + +ARVH+ +P 
Sbjct: 106 GLPKGG-NTGFELLDK-EQFGISQFSEQINYQRALEGELSRTIESLSPVQSARVHLAIPK 163

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    PTASV +  +   +    +  AI H+V+++V  L   +V ++D  G+LLT
Sbjct: 164 PTLFVREQKLPTASVTVGLLPGRMLDEGQISAIVHMVSSSVTGLTASNVIIVDQAGRLLT 223

Query: 219 ANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            N+  +++     + + + ++  ++  I   L+  +G  N  + V A+++    +     
Sbjct: 224 NNDNSQQSANSAQIKMTKEMESHLKQRIEDILSPLVGRANIHAQVTAQMDFSKVEQTSEE 283

Query: 278 YD----PDSKVERSIRLSKDAQRSE----------TSQPESAVT--VEQNMPHVSDRKVP 321
           Y     PDS   RS + S+  Q +           ++QP SA +  +E N  +    +  
Sbjct: 284 YKPNQTPDSAAIRSRQNSQSMQNNNGGTGGVPGALSNQPVSAPSAPIETNKDNKDGAQTA 343

Query: 322 LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK- 380
             R+  +  + +E +NYE++ K   T      ++RLS+AV+VN        G +  + K 
Sbjct: 344 NNRNSVSNSQSDETTNYEVDRKISHTQRQIGVVDRLSVAVIVNYHSQD---GENGPEMKP 400

Query: 381 -IDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
                L +I  +   A G ++ RGD++ IT+  F
Sbjct: 401 LPPEMLQQIEALTREAMGFSTARGDSLNITNSLF 434


>gi|299131954|ref|ZP_07025149.1| flagellar M-ring protein FliF [Afipia sp. 1NLS2]
 gi|298592091|gb|EFI52291.1| flagellar M-ring protein FliF [Afipia sp. 1NLS2]
          Length = 517

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 108/375 (28%), Positives = 186/375 (49%), Gaps = 5/375 (1%)

Query: 43  VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL 102
           V +P    LY  L   D + +   L    I + + ++G+ I VP   V + R+ LA +G 
Sbjct: 19  VTAPQMVTLYTDLSYDDASGVMKELDRQGIPYELKNDGAIIMVPKDKVTRLRMKLA-EGG 77

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162
                  GYE+FDK ++ G TSF+Q +  +RALEGE+ARTI+SI  I A RVH+V+PD  
Sbjct: 78  LPKGGGVGYEIFDKSDTLGSTSFVQNVNHLRALEGELARTIKSIDRIQAVRVHLVLPDRP 137

Query: 163 SFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM 222
            F +    P+A++++R       +   AIRHLVA++V  L    V+++D  G+LL     
Sbjct: 138 LFSREKPEPSAAIVVRVRGALEPQQVRAIRHLVASSVNGLKPQRVSIVDENGQLLADGSG 197

Query: 223 ERNILGKSLSIVQAIQHE--IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP 280
           + N +G   +  + I +E  +   I   + + +G    R  + A+ + +        +DP
Sbjct: 198 DANGMGDVGADERRIAYENRLRKQIESIVTSVVGAGRARVQLSADFDYNKVTETSDKFDP 257

Query: 281 DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEI 340
           + +V RS +  +++  +   Q    VTV   MP  + ++       + + K EE +NYEI
Sbjct: 258 EGRVLRSSQTREESSATSNGQ-NGQVTVNNEMPG-NQQQNAANAGKDQSKKSEEINNYEI 315

Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400
           +  +     +  +++R+S+AV+V+        G      +    L  I  +V +A G   
Sbjct: 316 SRTTKTEVTEAGRVQRVSVAVLVDGTYSKNEKGDMVYAPRSKEDLERIATLVRSAIGFEK 375

Query: 401 RRGDTITITSMDFLE 415
            RGD + + ++ F E
Sbjct: 376 NRGDQVDVVNLRFAE 390


>gi|254785458|ref|YP_003072887.1| flagellar MS-ring protein [Teredinibacter turnerae T7901]
 gi|237683992|gb|ACR11256.1| flagellar M-ring protein FliF [Teredinibacter turnerae T7901]
          Length = 558

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 119/442 (26%), Positives = 209/442 (47%), Gaps = 34/442 (7%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92
           + +  A   +     Y  LY  L+  D   +   L   +I ++I  +  ++ VP   + K
Sbjct: 39  VAIGFAVVLWSQGEDYKPLYGSLDRLDSAEVGQVLDFNDIPYKIDGSTGALLVPVDKLQK 98

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
           ARI LA  G+       G+EL D+    G + FM+     R+LEGE+ARTI SI+ + +A
Sbjct: 99  ARILLAENGI-QGDKTIGFELLDQEQPLGTSQFMEATRYRRSLEGELARTIASINSVRSA 157

Query: 153 RVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDV 207
           RVH+ +P    F + G  P+ASV +     R I P   K    I +LVAA++P LD  +V
Sbjct: 158 RVHLAIPKRSVFVRDGREPSASVFLDLYPGRPIKP---KQIAGIANLVAASIPELDSTNV 214

Query: 208 TVLDSTGKLLTANEMERNILGKS--LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE 265
           T++D  G L+     +  +   S  L   + ++ +I + I + L   +G  NF++ V A+
Sbjct: 215 TIVDQKGNLMEVAPEDEKLAQASQHLDYTRKVEDDIVLRIRRLLTPIIGDANFKTEVAAD 274

Query: 266 LNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV--SDRKVPLP 323
           L+    +     ++PD    RS + S++ QR     P        N P    +  +V +P
Sbjct: 275 LDFTEMEQAAETFNPDLPAIRSEQTSEE-QRIGAGGPGGIPGALTNQPPADGAAPEVAVP 333

Query: 324 RSLENTDKKEEQS------NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSAD 377
               +     +QS      NYE++     T H   +L RL++AVVV+     + + R+A+
Sbjct: 334 GGGGDGQTPPQQSQSRATRNYELDRTVSYTKHQKGRLRRLTVAVVVD-----DKVQRNAE 388

Query: 378 QGK------IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDI 431
            G+       ++ L  +  +V  A G ++ RGD++ + +  F+    F+SG + +   D 
Sbjct: 389 TGEATRVPWTEAELERLAILVRDAVGFSAARGDSVNVLNEPFVAQLDFDSGDLPIWKEDW 448

Query: 432 ---LSRHFATVINALVFLVGTL 450
              L++  A  +  +  ++G +
Sbjct: 449 FLSLAKQLAGFLIIVALILGLM 470


>gi|330972435|gb|EGH72501.1| flagellar MS-ring protein [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 594

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 148/579 (25%), Positives = 248/579 (42%), Gaps = 100/579 (17%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92
           + +  A   +   P Y  LY  L   D  +I   L+ ANI++ +  N  ++ V S  V +
Sbjct: 49  VAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTLTAANINYTVEPNSGALLVKSDDVQR 108

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
           ARI LA  G+  + +N G+E+ DK    G + FM+     R LEGE+ARTI +++ +  A
Sbjct: 109 ARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFMEATRYRRGLEGELARTISALNNVKGA 168

Query: 153 RVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDV 207
           RVH+ +P    F +   +P+ASV++     R++ PS      AI +LVA +VP L    +
Sbjct: 169 RVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEPS---QVMAIINLVATSVPELSKSQI 225

Query: 208 TVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE 265
           TV+D  G LL+  A   E  + GK     + ++  +   +   L   LG D +++ V A 
Sbjct: 226 TVVDQKGTLLSDQAENSELTMAGKQFDYSRRMEGMLTQRVQNILQPILGNDRYKAEVSAV 285

Query: 266 LNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE-----------TSQPESAVTVEQ---- 310
           ++    +     ++PD    RS + S + QRS            ++QP    T  Q    
Sbjct: 286 VDFSAVESTAESFNPDQPALRSEQ-SVNEQRSSSSSSGGVPGALSNQPPGPATAPQTAGG 344

Query: 311 ------------------NMPHVSDRKVPLPRSLENTDKKEEQS--NYEINTKSIATTHD 350
                             N   + D     P        K  QS  N+E++     T   
Sbjct: 345 GAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPADKRVQSTKNFELDRSISHTKQQ 404

Query: 351 NYKLERLSIAVVVN--------KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402
             +L RLS+AVVV+         G +T     +AD       LA   ++V  A G ++ R
Sbjct: 405 QGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAAD-------LARFTRLVQDAVGFDASR 457

Query: 403 GDTITITSMDF-------LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455
           GD++++ ++ F       L    F S   Q  F DI+ +            VG + +  L
Sbjct: 458 GDSVSVINVPFSSERAEVLPEASFYS---QPWFWDIVKQA-----------VGVIFILIL 503

Query: 456 GLHALRR-LHNIDDAKKGEV---GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF-S 510
               LR  L+NI + K+ E+   GG + L           G + ND ++L      +  S
Sbjct: 504 VFGVLRPVLNNITNGKRKELAGFGGDAELG----GMGGLDGELSNDRVSLGGPQSILLPS 559

Query: 511 HSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549
            +    +++N+  S         ++  +  R A+++++W
Sbjct: 560 PTEGYDAQLNAIKS---------LVAEDPGRVAQVVKEW 589


>gi|330953748|gb|EGH54008.1| flagellar MS-ring protein [Pseudomonas syringae Cit 7]
          Length = 594

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 148/579 (25%), Positives = 248/579 (42%), Gaps = 100/579 (17%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92
           + +  A   +   P Y  LY  L   D  +I   L+ ANI++ +  N  ++ V S  V +
Sbjct: 49  VAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTLTAANINYTVEPNSGALLVKSDDVQR 108

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
           ARI LA  G+  + +N G+E+ DK    G + FM+     R LEGE+ARTI +++ +  A
Sbjct: 109 ARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFMEATRYRRGLEGELARTISALNNVKGA 168

Query: 153 RVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDV 207
           RVH+ +P    F +   +P+ASV++     R++ PS      AI +LVA +VP L    +
Sbjct: 169 RVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEPS---QVMAIINLVATSVPELSKSQI 225

Query: 208 TVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE 265
           TV+D  G LL+  A   E  + GK     + ++  +   +   L   LG D +++ V A 
Sbjct: 226 TVVDQKGALLSDQAENSELTMAGKQFDYSRRMESMLTQRVQNILQPILGNDRYKAEVSAV 285

Query: 266 LNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE-----------TSQPESAVTVEQ---- 310
           ++    +     ++PD    RS + S + QRS            ++QP    T  Q    
Sbjct: 286 VDFSAVESTAESFNPDQPALRSEQ-SVNEQRSSSSSSGGVPGALSNQPPGPATAPQTAGG 344

Query: 311 ------------------NMPHVSDRKVPLPRSLENTDKKEEQS--NYEINTKSIATTHD 350
                             N   + D     P        K  QS  N+E++     T   
Sbjct: 345 GAAGAAGPIAPGQPLLDANGQQIMDPGTGQPALAPYPADKRVQSTKNFELDRSISHTKQQ 404

Query: 351 NYKLERLSIAVVVN--------KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402
             +L RLS+AVVV+         G +T     +AD       LA   ++V  A G ++ R
Sbjct: 405 QGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAAD-------LARFTRLVQDAVGFDASR 457

Query: 403 GDTITITSMDF-------LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455
           GD++++ ++ F       L    F S   Q  F DI+ +            VG + +  L
Sbjct: 458 GDSVSVINVPFSSERAEVLPEASFYS---QPWFWDIVKQA-----------VGVIFILIL 503

Query: 456 GLHALRR-LHNIDDAKKGEV---GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF-S 510
               LR  L+NI + K+ E+   GG + L           G + ND ++L      +  S
Sbjct: 504 VFGVLRPVLNNITNGKRKELAGFGGDAELG----GMGGLDGELSNDRVSLGGPQSILLPS 559

Query: 511 HSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549
            +    +++N+  S         ++  +  R A+++++W
Sbjct: 560 PTEGYDAQLNAIKS---------LVAEDPGRVAQVVKEW 589


>gi|170024616|ref|YP_001721121.1| flagellar MS-ring protein [Yersinia pseudotuberculosis YPIII]
 gi|169751150|gb|ACA68668.1| flagellar M-ring protein FliF [Yersinia pseudotuberculosis YPIII]
          Length = 570

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 141/551 (25%), Positives = 258/551 (46%), Gaps = 73/551 (13%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  SP Y  LY  L   D   I   L++ NI +R +DNG ++ +P+  V + R+ LA Q
Sbjct: 46  LWAKSPDYRVLYSNLSDRDGGDIVTQLTQLNIPYRFADNGGALLIPAEKVHETRLRLAQQ 105

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F ++I   RALEGE++RTI ++  ++  RVH+ MP 
Sbjct: 106 GLPKGGA-VGFELLDQ-EKFGISQFSEQINYQRALEGELSRTIGTLGPVLNVRVHLAMPK 163

Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
              F +    PTASV + A+ P          AI ++V+++V  L  G+VTV+D TG+LL
Sbjct: 164 PSLFVREQKSPTASVTL-ALQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLL 222

Query: 218 T-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           T ++   R++    L     +++  +  I   LA  +G  N  + V A+++  +++  + 
Sbjct: 223 TQSDSAGRDLNASQLKFTSEVENRYQRRIENILAPMVGNGNVHAQVTAQVDFASREQTDE 282

Query: 277 VYDPDSKVE----RSIRLSKDAQRSETS--QPESAVTVEQNMPHVSDRKVPLP------- 323
            Y P+        RS ++S   Q   T+      A++ +  +  ++  ++P P       
Sbjct: 283 EYKPNQAANQGAVRSQQVSTSEQLGGTNVGGVPGALSNQPPVAPIAPIEIPQPAGAAANN 342

Query: 324 -------------------RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
                              ++  +  + ++ +N+E++     T      ++RLS+AVVVN
Sbjct: 343 AAPANAAATANANTTATAAKASSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVN 402

Query: 365 --KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
               +  + +  S DQ      LA++  +   A G ++ RGDT+ + +  F  +      
Sbjct: 403 YTSDKAGKPIALSKDQ------LAQVESLTREAMGFSTVRGDTLNVVNTPFTASDDTRGS 456

Query: 423 TV----QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
           ++    Q SF D L       +NA  +L+  L+   L    LR +     AKK +V  K+
Sbjct: 457 SLPFWQQQSFFDQL-------LNAGRYLLILLVAWILWRKLLRPML----AKK-QVADKA 504

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
             S   +++ V T         +  S +++    +N Q R+++ V  Q   R+  + + +
Sbjct: 505 AAS---VNNIVQTAQAAE---TVKQSKEELALRKKN-QQRVSAEVQAQ---RIRELADKD 554

Query: 539 EERFAKILRKW 549
               A ++R+W
Sbjct: 555 PRVVALVIRQW 565


>gi|84502563|ref|ZP_01000699.1| flagellar FliF M-ring protein [Oceanicola batsensis HTCC2597]
 gi|84389375|gb|EAQ02172.1| flagellar FliF M-ring protein [Oceanicola batsensis HTCC2597]
          Length = 238

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 87/223 (39%), Positives = 139/223 (62%), Gaps = 12/223 (5%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNS---PHYDNLYVKLEVSDV 60
           +  LL+  K+   LG+ R++ L    +  ++L +A  F V +   P Y  LY  L  S+ 
Sbjct: 1   MQALLENLKA---LGQGRLIALG---VTGVVLVLATFFGVRAVLEPSYSTLYRDLTPSEA 54

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           +R+  AL  A    ++  +GS +SVP   + +AR+ LA QGL    + +G+E+FD+ +  
Sbjct: 55  SRMVGALEGAGFAVQVDSSGSILSVPQEDLARARMELAGQGLVGDGA-AGWEIFDEASGL 113

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI--R 178
           G+ SFMQ+I R+RALEGE+AR+IQ+I G+ AARVH+V+P+  +F +   +P++SV+I  R
Sbjct: 114 GMNSFMQKINRLRALEGELARSIQTIDGVDAARVHLVLPEREAFSRERPQPSSSVIIRSR 173

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE 221
           A +    + A+AIR LV++AVP +  G VTVL + G+ + A E
Sbjct: 174 AGHQVNLRQAQAIRALVSSAVPEMSPGRVTVLTANGETILAEE 216


>gi|66046686|ref|YP_236527.1| flagellar MS-ring protein [Pseudomonas syringae pv. syringae B728a]
 gi|63257393|gb|AAY38489.1| Flagellar FliF M-ring protein [Pseudomonas syringae pv. syringae
           B728a]
          Length = 594

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 148/579 (25%), Positives = 248/579 (42%), Gaps = 100/579 (17%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92
           + +  A   +   P Y  LY  L   D  +I   L+ ANI++ +  N  ++ V S  V +
Sbjct: 49  VAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTLTAANINYTVEPNSGALLVKSDDVQR 108

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
           ARI LA  G+  + +N G+E+ DK    G + FM+     R LEGE+ARTI +++ +  A
Sbjct: 109 ARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFMEATRYRRGLEGELARTISALNNVKGA 168

Query: 153 RVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDV 207
           RVH+ +P    F +   +P+ASV++     R++ PS      AI +LVA +VP L    +
Sbjct: 169 RVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEPS---QVMAIINLVATSVPELSKSQI 225

Query: 208 TVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE 265
           TV+D  G LL+  A   E  + GK     + ++  +   +   L   LG D +++ V A 
Sbjct: 226 TVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGMLTQRVQNILQPILGNDRYKAEVSAV 285

Query: 266 LNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE-----------TSQPESAVTVEQ---- 310
           ++    +     ++PD    RS + S + QRS            ++QP    T  Q    
Sbjct: 286 VDFSAVESTAESFNPDQPALRSEQ-SVNEQRSSSSSSGGVPGALSNQPPGPATAPQTAGG 344

Query: 311 ------------------NMPHVSDRKVPLPRSLENTDKKEEQS--NYEINTKSIATTHD 350
                             N   + D     P        K  QS  N+E++     T   
Sbjct: 345 GAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPADKRVQSTKNFELDRSISHTKQQ 404

Query: 351 NYKLERLSIAVVVN--------KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402
             +L RLS+AVVV+         G +T     +AD       LA   ++V  A G ++ R
Sbjct: 405 QGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAAD-------LARFTRLVQDAVGFDASR 457

Query: 403 GDTITITSMDF-------LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455
           GD++++ ++ F       L    F S   Q  F DI+ +            VG + +  L
Sbjct: 458 GDSVSVINVPFSSERAEVLPEASFYS---QPWFWDIVKQA-----------VGVIFILIL 503

Query: 456 GLHALRR-LHNIDDAKKGEV---GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF-S 510
               LR  L+NI + K+ E+   GG + L           G + ND ++L      +  S
Sbjct: 504 VFGVLRPVLNNITNGKRKELAGFGGDAELG----GMGGLDGELSNDRVSLGGPQSILLPS 559

Query: 511 HSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549
            +    +++N+  S         ++  +  R A+++++W
Sbjct: 560 PTEGYDAQLNAIKS---------LVAEDPGRVAQVVKEW 589


>gi|186895144|ref|YP_001872256.1| flagellar MS-ring protein [Yersinia pseudotuberculosis PB1/+]
 gi|186698170|gb|ACC88799.1| flagellar M-ring protein FliF [Yersinia pseudotuberculosis PB1/+]
          Length = 570

 Score =  148 bits (373), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 123/465 (26%), Positives = 218/465 (46%), Gaps = 58/465 (12%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  SP Y  LY  L   D   I   L++ NI +R +DNG ++ +P+  V + R+ LA Q
Sbjct: 46  LWAKSPDYRVLYSNLSDRDGGDIVTQLTQLNIPYRFADNGGALLIPAEKVHETRLRLAQQ 105

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F ++I   RALEGE++RTI ++  ++  RVH+ MP 
Sbjct: 106 GLPKGGA-VGFELLDQ-EKFGISQFSEQINYQRALEGELSRTIGTLGPVLNVRVHLAMPK 163

Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
              F +    PTASV + A+ P          AI ++V+++V  L  G+VTV+D TG+LL
Sbjct: 164 PSLFVREQKSPTASVTL-ALQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLL 222

Query: 218 T-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           T ++   R++    L     +++  +  I   LA  +G  N  + V A+++  +++  + 
Sbjct: 223 TQSDSAGRDLNASQLKFTSEVENRYQRRIENILAPMVGNGNVHAQVTAQVDFASREQTDE 282

Query: 277 VYDPDSKVE----RSIRLSKDAQRSETS--QPESAVTVEQNMPHVSDRKVPLPRSL---- 326
            Y P+        RS ++S   Q   T+      A++ +  +  ++  ++P P       
Sbjct: 283 EYKPNQAANQGAVRSQQVSTSEQLGGTNVGGVPGALSNQPPVAPIAPIEIPQPAGAAANN 342

Query: 327 ----------------------ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
                                  +  + ++ +N+E++     T      ++RLS+AVVVN
Sbjct: 343 AAPANAATTANANTTATAAKASSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVN 402

Query: 365 --KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
               +  + +  S DQ      LA++  +   A G ++ RGDT+ + +  F  +      
Sbjct: 403 YTSDKAGKPIALSKDQ------LAQVESLTREAMGFSTVRGDTLNVVNTPFTASDDTRGS 456

Query: 423 TV----QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
           ++    Q SF D L       +NA  +L+  L+   L    LR +
Sbjct: 457 SLPFWQQQSFFDQL-------LNAGRYLLILLVAWILWRKLLRPM 494


>gi|225850271|ref|YP_002730505.1| flagellar M-ring protein FliF [Persephonella marina EX-H1]
 gi|225645356|gb|ACO03542.1| flagellar M-ring protein FliF [Persephonella marina EX-H1]
          Length = 529

 Score =  148 bits (373), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 114/425 (26%), Positives = 214/425 (50%), Gaps = 24/425 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           IL +  +F K   +  R   LI+A ++L+  +  +A +  V    Y  LY  L   D   
Sbjct: 6   ILKKTSEFIKKNLN-PRNIALIIAGLLLITFLGIIAFKT-VTKEEYGVLYTHLNPDDAGS 63

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L E NI +++  +GS I VP + V + R+ LAA+GLPS  +  G+E+F++    G+
Sbjct: 64  ILSVLQEENIPYKVEGDGSIILVPRNKVHEIRLKLAAKGLPSGKT-VGFEIFEE-PKMGI 121

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T F + +  +RALEGE++RTI+ +  +  A+V+I +P    F +    P AS++++ + P
Sbjct: 122 TQFQENVNYLRALEGELSRTIRQLDPVRDAKVNIALPKESIFVREEDEPKASIILK-LWP 180

Query: 183 S---VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQA 236
                 +  +A+  LV+ AVP L   +VTV+D+ G++L+    E  +     K++ I + 
Sbjct: 181 GKDLTKEQVKAVVFLVSHAVPKLKPENVTVVDNRGRVLSDILEEDTVTAVSDKNVEIKRK 240

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV---ERSIRLSKD 293
           ++ +IE N+   L+  LG          E+     Q ++ +YDPD      ER I+  + 
Sbjct: 241 LERQIEKNVQTMLSRALGEGKVVVRATVEIETGKLQQQDEIYDPDRTAVVSERKIQEKEK 300

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
             + + + P    T   N+P V D +      ++  ++K+   NY +    + T    + 
Sbjct: 301 EFKQQEALPPGTPT---NVPPVID-ETGQGSIIKQKERKDTTKNYNVTKSLVNTQKPIFN 356

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQG-----KIDSYLAEINKIVSAATGINSRRGDTITI 408
           ++++S+ V+++ G+  +V     ++      + +  L     +V +A G + +RGD +T+
Sbjct: 357 IKKISVGVLID-GKYEKVKDEEGNEKYRFIPRSEEELKVYESLVKSAIGYDPKRGDQVTV 415

Query: 409 TSMDF 413
            S+ F
Sbjct: 416 VSVPF 420


>gi|27904573|ref|NP_777699.1| flagellar M-ring protein [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|38257545|sp|Q89B00|FLIF_BUCBP RecName: Full=Flagellar M-ring protein
 gi|27903970|gb|AAO26804.1| flagellar M-ring protein [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 555

 Score =  148 bits (373), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 131/450 (29%), Positives = 215/450 (47%), Gaps = 67/450 (14%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           F S  SL   R+L+L  V L+ +++F    FF    +Y  LY  L   D   I   L   
Sbjct: 20  FFSNLSLN-VRVLLL--VFLITLIVFYI--FFFKPLNYSILYNNLSNDDEKSIVSRLISL 74

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
            I F+ + N S + +PS+ + K  + LA QGLP      G+EL D    FGL+ F +E+ 
Sbjct: 75  KIPFKFNQNHSELLIPSNALKKVYLDLAEQGLPKEKK-VGFELLD-TEKFGLSQFNEEVN 132

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVY 185
             RALEGE+AR+IQ +  I  ARVHIV+     F +    P+ASV++     R +N   Y
Sbjct: 133 YERALEGELARSIQKLENIKTARVHIVLSKSSVFIREKKIPSASVILEIKPGRYLN---Y 189

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA------NEMERNILGKSLSIVQAIQH 239
               +I H+VA  V NL + ++T++D  G LL++      +    N L  S  I    ++
Sbjct: 190 NQINSILHIVAQGVSNLQIENITIVDQFGNLLSSMNDLYNDSYSNNQLKYSNEIETGYKN 249

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD-SKVERSIRLSKDAQRSE 298
           +IE      L   +GV+N  + V A+++ D Q+  E  + P+ S  ++S+R  ++ +  E
Sbjct: 250 KIE----SVLVPLVGVNNIHAQVTAQISFDKQENSEERFTPNYSNEKQSVRSVQNKKNIE 305

Query: 299 TSQPESAVTVEQNMPHVSDRKV------PLPRSLENTDKKEEQSNYEINTK--------- 343
            S+  S  +   N   +S++K+       L  +  N     EQ +   N+K         
Sbjct: 306 FSEKYSDNSFSSNQGVLSNKKLNDLSNSSLLFNHNNIPNFSEQVSSTKNSKRNLSDESVI 365

Query: 344 SIATTHDNY------------------KLERLSIAVVVN--KGRLTEVLGRSADQGKIDS 383
             ++T+ NY                   ++RLS+AVV+N  K +  + +  S D+     
Sbjct: 366 PQSSTNQNYIVNYELDHVISHNKFNVGNVKRLSVAVVINYVKDKHGKFVSLSTDK----- 420

Query: 384 YLAEINKIVSAATGINSRRGDTITITSMDF 413
            L  I K+V  + G + +RGD++++ +  F
Sbjct: 421 -LNSIKKLVCESVGFSRKRGDSVSVVNFKF 449


>gi|192359622|ref|YP_001982191.1| flagellar MS-ring protein [Cellvibrio japonicus Ueda107]
 gi|190685787|gb|ACE83465.1| flagellar M-ring protein FliF [Cellvibrio japonicus Ueda107]
          Length = 569

 Score =  148 bits (373), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 133/476 (27%), Positives = 227/476 (47%), Gaps = 36/476 (7%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
           F +  +SL   R + L   +   + +  A   ++    Y  LY +++  D   +   L +
Sbjct: 22  FLEGFSSLNLLRQIGLIITLAASVAIGFAVVMWMQGDDYRPLYGRMDNLDAANVIDVLDQ 81

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
             I F++  N  +I V +  V  AR+ LA  GLPSS   +G+EL DK    G + F++  
Sbjct: 82  HKIKFKMDTNTGAILVAADDVHMARLKLAEFGLPSSPV-AGFELMDKEQPLGTSQFVENT 140

Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSV 184
              R++EGE+ARTI SI+ I +ARVH+ MP    F +  A+PTASV +     R + P+ 
Sbjct: 141 RYQRSIEGELARTITSITSIRSARVHLAMPKKTVFVRDAAKPTASVFVEVFAGRTVAPAQ 200

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHEIE 242
            K   AI +LVA++VP++ M +VTV+D  G LL+  E   ++L   +     + ++  + 
Sbjct: 201 VK---AIMNLVASSVPDMKMENVTVVDQHGSLLSTGEESSDLLLATRQHQYAKEVETSVI 257

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSE--- 298
             IN  L   +G   FR+ V A+++    +     ++PD    RS + L++    SE   
Sbjct: 258 QRINSILEPVVGDGKFRAQVNADIDFTAVEQAAETFNPDLPAIRSEQTLNESRTGSELAG 317

Query: 299 ------TSQPE--SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
                 T+QP   +A   EQ  P       P+ +     ++++   NYE++     T H 
Sbjct: 318 GIPGALTNQPPGTAAQAPEQIDPATGQ---PIQQQPPKNNREQATRNYELDRTISYTKHQ 374

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
              L+RL++AVVV+   +    G        D+ L  ++ +V  A G ++ RGD++ + +
Sbjct: 375 QGTLKRLTVAVVVDDKVVRNAEGVETRVPWTDAELERLSILVRDAVGFSAVRGDSVNVLN 434

Query: 411 MDFLENQLFNSG---TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
             F       SG   +VQ    D +      ++  + +L G L++  +    LR L
Sbjct: 435 SPF-------SGIDASVQTQVEDAMPWWQQWIMANIKYLAGILVILIVVFGLLRPL 483


>gi|300994277|ref|ZP_07180829.1| flagellar M-ring protein FliF [Escherichia coli MS 200-1]
 gi|300304942|gb|EFJ59462.1| flagellar M-ring protein FliF [Escherichia coli MS 200-1]
          Length = 508

 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 120/419 (28%), Positives = 196/419 (46%), Gaps = 45/419 (10%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSS 105
           P Y  L+  L   D   I   L++ NI +R S+   +I VP+  V + R+ LA QGLP  
Sbjct: 2   PDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKG 61

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
            +  G+EL D+   FG++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F 
Sbjct: 62  GA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFV 119

Query: 166 KIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEM 222
           +    P+ASV +  +        +  AI HLV++AV  L  G+VT++D  G LLT +N  
Sbjct: 120 REQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTS 179

Query: 223 ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS 282
            R++    L     ++  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+ 
Sbjct: 180 GRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIHAQVSAQLDFASKEQTEEQYRPNG 239

Query: 283 KVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ---- 335
               +   S+    SE S    P        N P  ++   P+     N + +++Q    
Sbjct: 240 DESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPAN-NAPISTPPTNQNNRQQQASTT 298

Query: 336 -------------SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI- 381
                        SNYE++     T  +   ++RLS+AVVVN   L +        GK  
Sbjct: 299 SNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPD--------GKPL 350

Query: 382 ---DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV-----QVSFMDIL 432
              +  + +I  +   A G + +RGD++ + +  F  N    SG       Q +F+D L
Sbjct: 351 PLSNEQMKQIEALTREAMGFSEKRGDSLNVVNSPF--NSSDESGGALPFWQQQAFIDQL 407


>gi|261855054|ref|YP_003262337.1| flagellar M-ring protein FliF [Halothiobacillus neapolitanus c2]
 gi|261835523|gb|ACX95290.1| flagellar M-ring protein FliF [Halothiobacillus neapolitanus c2]
          Length = 590

 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 125/461 (27%), Positives = 227/461 (49%), Gaps = 44/461 (9%)

Query: 21  RILILASVILVPIMLFMAARF-FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN 79
           ++LIL  V L   + FM   F +   P    LY  L   +   +  AL  A  ++++S +
Sbjct: 37  QLLIL--VALAATLSFMVGFFLWGQKPSLVPLYTNLGPKESAAVVEALRAAKKNYQLSAD 94

Query: 80  GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEI 139
           G+ +  P+ +    R+ LA +GLPS +   G E+ DK  S G + F+++     A+E E+
Sbjct: 95  GAILVDPAQLPA-VRMLLAGEGLPSGN-GVGLEMLDKDQSLGTSQFVEQARYQHAIEIEL 152

Query: 140 ARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIR---HLVA 196
           AR+I++I G+ AARVH+  P    F +   +PTASV++  ++P    +A+ +R   HLVA
Sbjct: 153 ARSIETIQGVSAARVHLATPKQSVFVREQQKPTASVVVE-LSPGQSLTADQVRAIVHLVA 211

Query: 197 AAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQAIQHEIEMNINKALAAFL 253
           ++V  +   +V+V+D  G+LL+ N  + + +G   K  +  Q ++      I   L   +
Sbjct: 212 SSVAGMKPENVSVIDQRGELLSQNSDDASGMGLTDKQFAYRQRVERAYARQIEALLTPIV 271

Query: 254 GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR-------------SETS 300
           G +  R+ V A+++   Q+     Y P + V  S + + D  R             + ++
Sbjct: 272 GANQVRAQVSADIDFSRQEGTSETYGPKTGVVLSEQ-TNDTTRALGDQGINGGVPGALSN 330

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLEN-----------TDKKEEQSNYEINTKSIATTH 349
           QP    TV    P  S    P P +L+            + +K E  NY ++     T +
Sbjct: 331 QPPGGGTV---TPQTSGGLQP-PANLDVQQYQQIIQTPISTQKNETRNYNVDKDIRHTQY 386

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
            +  +++L++AV++++  +T+  G++  +   D+ LA I  +VS A G++ +RGD +T+ 
Sbjct: 387 ASGAVDKLNVAVLLDEKTVTDKDGKTKTEPMSDAELARIKDLVSQAVGLDEQRGDKLTLA 446

Query: 410 SMDFLENQLFNSGTV---QVSFMDILSRHFATVINALVFLV 447
           S+ F+E ++         Q  FM +L      V   L+FL+
Sbjct: 447 SIPFVEQKIEKVSVPLWQQEWFMPLLKNLGLGVAMLLIFLM 487


>gi|82702474|ref|YP_412040.1| flagellar MS-ring protein [Nitrosospira multiformis ATCC 25196]
 gi|82410539|gb|ABB74648.1| flagellar M-ring protein FliF [Nitrosospira multiformis ATCC 25196]
          Length = 567

 Score =  147 bits (372), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 111/403 (27%), Positives = 191/403 (47%), Gaps = 27/403 (6%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92
           + L  A   +   P Y  L+  +   D   I  +L + N+ ++ ++ G +I VPSS V  
Sbjct: 56  VALLAAGWMWTQGPDYKVLFSNVSDGDGGAIIASLQQMNVPYKFAEGGGAILVPSSQVHD 115

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
            R+ LA+QGLP      G+EL +    FG + F++++   RALEGE+AR++Q+++ + +A
Sbjct: 116 TRLKLASQGLPRGGL-VGFELMEN-QKFGTSQFLEQVNFQRALEGELARSVQALAAVDSA 173

Query: 153 RVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDV 207
           RVH+ +P    F +   +P+ASV++     R ++P   +   AI HLV+++VPNL + +V
Sbjct: 174 RVHLAIPKQSVFMREQQKPSASVLVNLYPGRTLDP---QQVNAIVHLVSSSVPNLHVKNV 230

Query: 208 TVLDSTGKLLTANEMERNILG---KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVA 264
           TV+D  G LLT  +      G     L  + A++      I   L   +G +N R+ V A
Sbjct: 231 TVVDQQGDLLTRIDESNPNTGLDPAQLKYLHALEQSYIKRIEAILIPIVGQENVRAQVAA 290

Query: 265 ELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET--SQPESAVT------------VEQ 310
           E++    +     Y P+     S   S+ +  S    +Q E  V                
Sbjct: 291 EVDFAHSEQTSETYRPNQDPAGSTIRSQQSSESTNVGTQNEGGVPGALSNQPPVPATAPV 350

Query: 311 NMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTE 370
             P         P    ++ +K+   NYE++            ++RLS+AVVVN  R+ +
Sbjct: 351 TTPPAPPGATASPSRAPSSTRKDATINYEVDKTIQHVRKPVGGIKRLSVAVVVNHRRVVD 410

Query: 371 VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
             G  + +   +   ++I  +V  A G +  RGDT+ + +  F
Sbjct: 411 ENGVVSAKPLSEVEKSQITDLVKEAVGFSRERGDTLNVVNSHF 453


>gi|300931151|ref|ZP_07146498.1| flagellar M-ring protein FliF [Escherichia coli MS 187-1]
 gi|300461008|gb|EFK24501.1| flagellar M-ring protein FliF [Escherichia coli MS 187-1]
          Length = 507

 Score =  147 bits (372), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 112/395 (28%), Positives = 187/395 (47%), Gaps = 38/395 (9%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSS 105
           P Y  L+  L   D   I   L++ NI +R S+   +I VP+  V + R+ LA QGLP  
Sbjct: 1   PDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKG 60

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
            +  G+EL D+   FG++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F 
Sbjct: 61  GA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFV 118

Query: 166 KIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEM 222
           +    P+ASV +  +        +  AI HLV++A+  L  G+VT++D  G LLT +N  
Sbjct: 119 REQKSPSASVTVNLLPGRALDEGQISAIVHLVSSALAGLPPGNVTLVDQGGHLLTQSNTS 178

Query: 223 ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS 282
            R++    L     ++  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+ 
Sbjct: 179 GRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNG 238

Query: 283 KVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ---- 335
               +   S+    SE S    P        N P  ++   P+     N + +++Q    
Sbjct: 239 DESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPAN-NAPISTPPANQNNRQQQASTT 297

Query: 336 -------------SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI- 381
                        SNYE++     T  +   ++RLS+AVVVN   L +        GK  
Sbjct: 298 SNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPD--------GKPL 349

Query: 382 ---DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
              +  + +I  +   A G + +RGD++ + +  F
Sbjct: 350 PLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 384


>gi|58038899|ref|YP_190863.1| flagellar MS-ring protein [Gluconobacter oxydans 621H]
 gi|58001313|gb|AAW60207.1| Flagellar M-ring protein FliF [Gluconobacter oxydans 621H]
          Length = 482

 Score =  147 bits (372), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 109/339 (32%), Positives = 177/339 (52%), Gaps = 19/339 (5%)

Query: 85  VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144
           VP   V +AR+ LA  GLPS  S  GYE+FDK NSF  T F Q I   RALEGE+ R+I+
Sbjct: 2   VPDDDVARARLLLAQSGLPSGGS-VGYEIFDKGNSFTATQFEQTINETRALEGELERSIR 60

Query: 145 SISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAV 199
            I G+  ARVH+V+     F        ASV++     R ++    +S  A+ +LV+AAV
Sbjct: 61  LIHGVRNARVHLVLRHRELFSTDEQNAQASVLLSMDGGRRLD---EESIAAVVNLVSAAV 117

Query: 200 PNLDMGDVTVLDSTGK-LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNF 258
           P LD  +++++D+ G  LL   E   N    +    Q I+  I   +   L + LG  + 
Sbjct: 118 PGLDAHNISLIDNRGHVLLKQGEGNSNGGQSAEEQRQLIEQRIAREVEDLLGSSLGPGHV 177

Query: 259 RSAVVAELNMDTQQIREIV--YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVS 316
           R  V A + M+   +RE    YDPD +V RS +     ++S  +Q  +  TV  N+P+ +
Sbjct: 178 R--VEANVTMNNDHVRETQENYDPDQQVLRSQQTK--TEKSINTQGSTNTTVSNNLPNAN 233

Query: 317 DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA 376
             +    ++   ++++E+ +NYEI+        D  ++ R+S+AV+V+    ++  G ++
Sbjct: 234 AGQ---QQNGSQSNRQEQTNNYEISKTVRTLVQDQPRIARISMAVMVDGISQSDGKGHAS 290

Query: 377 DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
            Q +    L  +  +  +A G +  RGD +T+ SM F +
Sbjct: 291 WQPRNQEELGRLTALTKSAVGFDQSRGDVVTVMSMKFTD 329


>gi|238758092|ref|ZP_04619272.1| Flagellar M-ring protein [Yersinia aldovae ATCC 35236]
 gi|238703630|gb|EEP96167.1| Flagellar M-ring protein [Yersinia aldovae ATCC 35236]
          Length = 569

 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 125/463 (26%), Positives = 213/463 (46%), Gaps = 58/463 (12%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  SP Y  LY  L   D   I   L++ NI +R +DNG ++ VP+  V + R+ LA Q
Sbjct: 46  LWAKSPDYRVLYSNLSDRDGGDIVTQLTQLNIPYRFADNGGALLVPAEKVHETRLRLAQQ 105

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F ++I   RALEGE++RTI ++  ++  RVH+ MP 
Sbjct: 106 GLPKGGA-VGFELLDQ-EKFGISQFSEQINYQRALEGELSRTIGTLGPVMNVRVHLAMPK 163

Query: 161 MGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
              F +    PTASV + A+ P          AI ++V+++V  L  G+VTV+D  G+LL
Sbjct: 164 PSLFVREQKSPTASVTL-ALQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQMGRLL 222

Query: 218 T-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           T ++   R++    L     +++  +  I   LA  +G  N  + V A+++   ++  + 
Sbjct: 223 TQSDSAGRDLNAAQLKFTNEVENRFQRRIENILAPMVGNGNVHAQVTAQVDFANREQTDE 282

Query: 277 VYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLP------------- 323
            Y P+    +    S+    SE    +   T    +P     + P+              
Sbjct: 283 EYKPNQDANQGAVRSQQVSTSE----QLGGTNVGGVPGALSNQPPIAPVAPIEAPQAAPA 338

Query: 324 ------------RSLENTDKK----------EEQSNYEINTKSIATTHDNYKLERLSIAV 361
                       R    T  K          ++ +N+E+N     T      ++RLS+AV
Sbjct: 339 AGATANTANTANRPATTTAAKSSATSSNSRHDQTTNFEVNRTIRHTQQQAGMVQRLSVAV 398

Query: 362 VVNKG--RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           VVN G  +  + +  + DQ      LA++  +   A G ++ RGDT+ + +  F  +   
Sbjct: 399 VVNYGSDKAGKPIALTKDQ------LAQVESLTREAMGFSTTRGDTLNVVNTPFSASD-- 450

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           ++G   + F    S  F  ++NA  +L+  LLV ++    L R
Sbjct: 451 DTGGHSLPFWQQPS-FFDQLLNAGRYLL-ILLVAWILWRKLVR 491


>gi|28869162|ref|NP_791781.1| flagellar M-ring protein FliF [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213967561|ref|ZP_03395709.1| flagellar M-ring protein FliF [Pseudomonas syringae pv. tomato T1]
 gi|301385734|ref|ZP_07234152.1| flagellar MS-ring protein [Pseudomonas syringae pv. tomato Max13]
 gi|302059423|ref|ZP_07250964.1| flagellar MS-ring protein [Pseudomonas syringae pv. tomato K40]
 gi|302134812|ref|ZP_07260802.1| flagellar MS-ring protein [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|28852402|gb|AAO55476.1| flagellar M-ring protein FliF [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213927862|gb|EEB61409.1| flagellar M-ring protein FliF [Pseudomonas syringae pv. tomato T1]
          Length = 594

 Score =  147 bits (371), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 151/604 (25%), Positives = 257/604 (42%), Gaps = 100/604 (16%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L
Sbjct: 24  LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + ANI++ +  N  ++ V S  V +ARI LA  G+  + +N G+E+ DK    G + FM+
Sbjct: 84  TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINP 182
                R LEGE+ARTI +++ +  ARVH+ +P    F +   +P+ASV++     R++ P
Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHE 240
           S      AI +LVA +VP L    +TV+D  G LL+  A   E  + GK     + ++  
Sbjct: 204 S---QVLAIINLVATSVPELSKSQITVVDQKGTLLSDQAENSELTMAGKQFDYSRRMEGM 260

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           +   +   L   LG D +++ V A ++    +     ++PD    RS + S + QRS +S
Sbjct: 261 LTQRVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQ-SVNEQRSSSS 319

Query: 301 -----------QPESAVT----------------------VEQNMPHVSDRKVPLPRSLE 327
                      QP    T                      ++ N   + D     P    
Sbjct: 320 STGGVPGALSNQPPGPATAPQNAAAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAP 379

Query: 328 NTDKKEEQS--NYEINTKSIATTHDNYKLERLSIAVVVN--------KGRLTEVLGRSAD 377
               K  QS  N+E++     T     +L RLS+AVVV+         G ++     +AD
Sbjct: 380 YPADKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVSRAPWSAAD 439

Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF-------LENQLFNSGTVQVSFMD 430
                  LA   ++V  A G ++ RGD++++ ++ F       L    F S   Q  F D
Sbjct: 440 -------LARFTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYS---QPWFWD 489

Query: 431 ILSRHFATVINALVFLVGTLLVTFLGLHALRR-LHNIDDAKKGEV---GGKSILSPPPIS 486
           I+ +            VG + +  L    LR  L+NI   K  E+   GG + L      
Sbjct: 490 IVKQA-----------VGVIFILILVFGVLRPVLNNITSGKSKELAGFGGDAELG----G 534

Query: 487 SAVTTGLMPNDNIALDSSNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545
                G + ND ++L      +  S +    +++N+  S         ++  +  R A++
Sbjct: 535 MGGLDGELSNDRVSLGGPQSILLPSPTEGYDAQLNAIKS---------LVAEDPGRVAQV 585

Query: 546 LRKW 549
           +++W
Sbjct: 586 VKEW 589


>gi|260432137|ref|ZP_05786108.1| flagellar M-ring protein FliF [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415965|gb|EEX09224.1| flagellar M-ring protein FliF [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 531

 Score =  147 bits (370), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 129/406 (31%), Positives = 202/406 (49%), Gaps = 18/406 (4%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           SL R + +I+A   ++  +  +A    V SP    LY  LE      I  AL +  + + 
Sbjct: 10  SLDRRKQIIVAGAAILVFLSVLAMSRVVTSPSMTLLYAGLEAGAAGDIVRALDQRGVTYE 69

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135
           I   G SI VP S   + R+ LA++GLP++  N GYEL D ++ FG TS M +    RA 
Sbjct: 70  I--RGGSIYVPVSKRDELRMTLASEGLPANG-NRGYELLDSLSGFGTTSQMFDAAYWRAK 126

Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV-YKSAEAIRHL 194
           EGE+ARTI S   +  ARVHI       F++  A PTASV +      V  + A+AIR L
Sbjct: 127 EGELARTIVSSPHVSQARVHIANGSSNPFQRSVA-PTASVYLVPAGARVTVEQAKAIRFL 185

Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLG 254
           VA+AV  L   DV V+DS G ++   E    ++    +  +A        + + + A +G
Sbjct: 186 VASAVTGLAPEDVAVIDSNGAVIGPQEA---VVATDTADDKARLL--RERVLRLVEARVG 240

Query: 255 VDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA-VTVEQNMP 313
             N    V  +   +T+ IRE  +DP  +V  S  +    +RS++S+ +S+ VTV  N+P
Sbjct: 241 PGNAVVEVSVDTVTETESIRERRFDPKGRVAISTDIE---ERSDSSRNQSSDVTVASNLP 297

Query: 314 HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373
                      S     +  E+ NYE++   +        ++RL++AV+VN  R  +  G
Sbjct: 298 D--GDAAGGDESNSTATQTRERVNYEVSETELEVHRVPGAIKRLTVAVIVNGTRTVDASG 355

Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF--LENQ 417
               +   +  L  + ++V++A G ++ RGD IT+ SM+   LE Q
Sbjct: 356 TPVFEPMPEPELEALQELVASAVGFDAERGDVITLKSMELPDLEPQ 401


>gi|322833196|ref|YP_004213223.1| flagellar M-ring protein FliF [Rahnella sp. Y9602]
 gi|321168397|gb|ADW74096.1| flagellar M-ring protein FliF [Rahnella sp. Y9602]
          Length = 569

 Score =  147 bits (370), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 141/558 (25%), Positives = 251/558 (44%), Gaps = 81/558 (14%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  L+  L   D   I   L++ NI ++ SDNG ++ +P+  V + R+ LAA 
Sbjct: 46  LWAKQPTYKVLFSNLGDQDGGAIVTQLTQMNIPYQFSDNGGALLIPADKVYETRLKLAAA 105

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F ++I   RALEGE++RTI+++  + +ARVH+ +P 
Sbjct: 106 GLPKGGA-VGFELMDQ-EKFGISQFSEQINYQRALEGELSRTIETLGPVSSARVHLAIPK 163

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    P+ASV +     RA++        AI ++V+++V  L   +VTV+D +G 
Sbjct: 164 PSLFVREQKNPSASVTLNLQPGRALDDG---QINAIVYMVSSSVSGLPPANVTVVDQSGH 220

Query: 216 LLTANEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT ++   R++    L     ++  ++  I   L   +G  N  + + A+++  +++  
Sbjct: 221 LLTQSDNNGRDLNASQLKYANEVEGRLQRRIESILQPVVGNGNVHAQITAQIDYASREQT 280

Query: 275 EIVYDPDSKVE----RSIRLSKDAQRSETS----------QPESAVTVEQNMPHVSDR-- 318
           +  Y P+   +    RS +LS   Q   +S          QP  A T     P  ++   
Sbjct: 281 DENYQPNGSADKAAVRSRQLSTSDQIGASSVGGVPGALSNQPAPAATAPVTNPPAANNAN 340

Query: 319 -------------------KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
                               VP  R      +++E +NYE++     T H    ++RLS 
Sbjct: 341 GTQNQTGNNAQNAATTANANVPSNR------RRDETTNYEVDRTITHTQHSAGAVQRLSA 394

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AVVVN     +V      +   D  L +I+ +V  A G +  RGDT+ + +  F E    
Sbjct: 395 AVVVN----YQVGPDGKAKPLTDDQLKKIDDLVREAMGFSQERGDTLNVVNTPFNE-AAD 449

Query: 420 NSGTV----QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
           +SG +    Q +F D L       +NA  +L+  ++   L    +R +     A+K    
Sbjct: 450 DSGELPFWKQQAFFDQL-------LNAGRWLLVLIVAWLLWRKMVRPMLRKQQAEKDAAA 502

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
                     ++   T   P  +  +  SN ++    R+ Q R++  V  Q   R+  + 
Sbjct: 503 ---------AAALAATMPQPEGSKPVKLSNDELEKRKRS-QQRVSVEVQTQ---RVQELA 549

Query: 536 EINEERFAKILRKWARSE 553
           + +    A ++R+W  +E
Sbjct: 550 DKDPRIVALVIRQWMSTE 567


>gi|315126013|ref|YP_004068016.1| flagellar MS-ring protein FliF [Pseudoalteromonas sp. SM9913]
 gi|315014527|gb|ADT67865.1| flagellar MS-ring protein FliF [Pseudoalteromonas sp. SM9913]
          Length = 575

 Score =  147 bits (370), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 139/479 (29%), Positives = 235/479 (49%), Gaps = 48/479 (10%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L   L F  SG     T I +LA+++   I+L +    + ++ +Y  LY   E  D   I
Sbjct: 23  LSNKLNFGSSGDRSVAT-IALLATLVAATIVLIL----WTSAKNYVPLYGNQESYDKANI 77

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L +  I FRI  +  +I VP   +  ARI LAA+G+ +S       + DKV S G +
Sbjct: 78  LEILDKEQITFRIDTDSGNILVPQEKLADARITLAARGIKASMPEGIENISDKV-SMGTS 136

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMI----- 177
            F++ +    ALEGE+ARTI ++ GI  ARVH+ +P    F  +   +  ASVM+     
Sbjct: 137 QFIESMQYQHALEGELARTIINMQGIRNARVHLAVPKRSLFVGRTEQKTAASVMVDLAPG 196

Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS----LSI 233
             + P   +  EAI  L+  +VP LD   V+V+D  GKLL+ +  +   +GK     L+ 
Sbjct: 197 HELKP---EQVEAIIALIIGSVPGLDSRSVSVVDQRGKLLSGDLFDTTPVGKETDKKLAF 253

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPDSKVERSIRLSK 292
           ++ ++  IE   +  L   LG  NFR  V ++++    ++ RE+V DP +       L++
Sbjct: 254 IEKVERNIEQRASIMLLPILGEGNFRIQVSSDVDFSVVEETREMV-DPQNV------LTQ 306

Query: 293 DAQRSETSQPESAVTVE---QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
           +  +S+++  + A  +     N P V + +     +   + + E +  +E N +S+  TH
Sbjct: 307 EFIKSDSTLDQLAAGIPGSLANEPPVPNEQAEDENNERTSQRSESKRQFE-NGRSV--TH 363

Query: 350 DNYKLER---LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
             +++ R   +S++V++N     E +  +AD G  +  LA + ++V  ATG N  RGD  
Sbjct: 364 TQFEVGRIKNMSLSVLIN-----EQVAGTAD-GWSEEKLASLGEMVKKATGFNDARGDQF 417

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465
            ITS  F+E ++   G     +     + +A       ++VGTL+   L L  +R L N
Sbjct: 418 NITSFAFVEQKILAPGEGLEWWQMPELKEYAR------YIVGTLISLLLILFGVRPLVN 470


>gi|85058031|ref|YP_453733.1| flagellar basal-body M-ring protein FliF [Sodalis glossinidius str.
           'morsitans']
 gi|84778551|dbj|BAE73328.1| flagellar basal-body M-ring protein FliF [Sodalis glossinidius str.
           'morsitans']
          Length = 568

 Score =  147 bits (370), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 123/422 (29%), Positives = 198/422 (46%), Gaps = 65/422 (15%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  LY  +   D   +   L+  NI +R + N  +I VPS  V + R+ LA +
Sbjct: 47  LWARTPDYRILYSNISDQDGGAVVAELTTMNIPYRFAGNSDAIMVPSDRVHETRLLLAQK 106

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F ++I   RALEGEIARTI++++ + +ARVHI MP 
Sbjct: 107 GLPKGGA-LGFELLDR-EKFGMSQFSEQINYQRALEGEIARTIKTLNPVKSARVHIAMPK 164

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +     TASV +     RA++       +AI  LV+  VP+L  G++T++DS G+
Sbjct: 165 PSLFVREHKPATASVTLTLYPGRALD---TGQIQAITWLVSGTVPDLPAGNITMVDSQGQ 221

Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LL      E ++    L+  + ++ + +  I+  LA  +G  N R+ V A+L+    +  
Sbjct: 222 LLAQPGNNELDLSTTQLAYTREVEGDFQRRISAILAPVIGAANVRAEVTAQLDFTAVEQT 281

Query: 275 EIVYDPDSKVE----RSIRLSKDAQ------------RSETSQPESAVTVEQNMPHVSDR 318
              + P+ + E    RS +LS   Q             S    P +  ++E      + +
Sbjct: 282 AEQHKPNGRPEEMAIRSQQLSASDQIGIQAPGGVPGALSNQPTPPATASIESPANAAAGK 341

Query: 319 K----------------VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK---LERLSI 359
           K                V  PRS +N    E+  NYE++      TH  ++   ++RLS 
Sbjct: 342 KPASKDSVPPPAAAAPIVQPPRSSQN----EKTINYEVDR---TLTHSRFRPGVIKRLSG 394

Query: 360 AVVVNKGRLTEVLGRSADQGK----IDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           AVVVN         R    G         + ++  +V  A G +S RGDT+ I +  F+ 
Sbjct: 395 AVVVND--------REDSNGNRVHLTPQEMQDVTALVREAMGFSSERGDTLNIVNTRFVA 446

Query: 416 NQ 417
           NQ
Sbjct: 447 NQ 448


>gi|331017004|gb|EGH97060.1| flagellar MS-ring protein [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 594

 Score =  146 bits (369), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 153/603 (25%), Positives = 258/603 (42%), Gaps = 98/603 (16%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L
Sbjct: 24  LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGIDSKQIMDTL 83

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + ANI++ +  N  ++ V S  V +ARI LA  G+  + +N G+E+ DK    G + FM+
Sbjct: 84  TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINP 182
                R LEGE+ARTI +++ +  ARVH+ +P    F +   +P+ASV++     R++ P
Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHE 240
           S      AI +LVA +VP L    +TV+D  G LL+  A   E  + GK     + ++  
Sbjct: 204 S---QVLAIINLVATSVPELSKSQITVVDQKGTLLSDQAENSELTMAGKQFDYSRRMEGM 260

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           +   +   L   LG D +++ V A ++    +     ++PD    RS + S + QRS +S
Sbjct: 261 LTQRVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQ-SVNEQRSSSS 319

Query: 301 -----------QPESAVT----------------------VEQNMPHVSDRKVPLPRSLE 327
                      QP    T                      ++ N   + D     P    
Sbjct: 320 STGGVPGALSNQPPGPATAPQNAAAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAP 379

Query: 328 NTDKKEEQS--NYEINTKSIATTHDNYKLERLSIAVVVN--------KGRLTEVLGRSAD 377
               K  QS  N+E++     T     +L RLS+AVVV+         G ++     +AD
Sbjct: 380 YPADKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVSRAPWSAAD 439

Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF-------LENQLFNSGTVQVSFMD 430
                  LA   ++V  A G ++ RGD++++ ++ F       L    F S   Q  F D
Sbjct: 440 -------LARFTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYS---QPWFWD 489

Query: 431 ILSRHFATVINALVFLVGTLLVTFLGLHALRR-LHNIDDAKKGEV---GGKSILSPPPIS 486
           I+ +            VG + +  L    LR  L+NI   K  E+   GG + L      
Sbjct: 490 IVKQA-----------VGVIFILILVFGVLRPVLNNITSGKSKELAGFGGDAELG----G 534

Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546
                G + ND ++L    Q I      L S    Y ++ + ++   ++  +  R A+++
Sbjct: 535 MGGLDGELSNDRVSL-GGPQSIL-----LPSPTEGYDAQLNAIK--SLVAEDPGRVAQVV 586

Query: 547 RKW 549
           ++W
Sbjct: 587 KEW 589


>gi|302342347|ref|YP_003806876.1| flagellar M-ring protein FliF [Desulfarculus baarsii DSM 2075]
 gi|301638960|gb|ADK84282.1| flagellar M-ring protein FliF [Desulfarculus baarsii DSM 2075]
          Length = 560

 Score =  146 bits (369), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 114/403 (28%), Positives = 201/403 (49%), Gaps = 51/403 (12%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            ++N P Y  L+  L   D +++   L +  +D+++   G++I VP   V +AR+ LA+ 
Sbjct: 60  LWLNQPDYQTLFSGLSQQDASQVVNQLKDMKLDYKLESGGTTILVPEESVYEARLTLASA 119

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP  ++  G+E+F++V   G T F+Q I   RAL+GE+ARTI S   +  ARVHIV+P 
Sbjct: 120 GLPRGTAGVGFEVFNEVQ-MGATDFVQRINYQRALQGELARTISSFGEVEDARVHIVLPR 178

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +   +P+A+V++R        + +   + HLVA +VP+L    VT++D+ G LL 
Sbjct: 179 ESLFVEDEKKPSAAVVVRLARGQSLSAGQIAGVVHLVAGSVPDLTDDRVTIVDTNGNLLY 238

Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAA--------FLGVDNFRSAVVAELNMDT 270
             +++      +L+   A Q + + N+ +   A         LG       V A+++   
Sbjct: 239 RKDVDTADFPAALT---ASQLDYQKNLERGFVAKVQSMLEEVLGPGRAVVRVNADIDFTR 295

Query: 271 QQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVS-DRKVPL------P 323
               + ++DPD          + A RSET   + ++    NMP  S D++  L      P
Sbjct: 296 TSTTQDLFDPD----------QVAVRSETRASDKSIN-SGNMPIGSPDQRFTLAEANANP 344

Query: 324 RSLEN---TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN---------KGRLTEV 371
              +N   TD + E +NYEI+            L+RL++AV+++         +G  T  
Sbjct: 345 EEGQNQSKTDTENETTNYEISRTQKQVQKAIGGLQRLTVAVMIDGPYKDAADAEGNTTRS 404

Query: 372 LG-RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
              RSA++      + ++ ++V  A G +++RGD +T+ ++ F
Sbjct: 405 FAPRSAEE------MQQLTELVRRAVGYDAQRGDQVTLANIPF 441


>gi|330876010|gb|EGH10159.1| flagellar MS-ring protein [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
 gi|330967111|gb|EGH67371.1| flagellar MS-ring protein [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 594

 Score =  146 bits (369), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 150/604 (24%), Positives = 257/604 (42%), Gaps = 100/604 (16%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L
Sbjct: 24  LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + ANI++ +  N  ++ V S  V +ARI LA  G+  + +N G+E+ DK    G + FM+
Sbjct: 84  TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINP 182
                R LEGE+ARTI +++ +  ARVH+ +P    F +   +P+ASV++     R++ P
Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHE 240
           S      AI +LVA +VP L    +TV+D  G LL+  A   E  + GK     + ++  
Sbjct: 204 S---QVLAIINLVATSVPELSKSQITVVDQKGTLLSDQAENSELTMAGKQFDYSRRMEGM 260

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           +   +   L   LG D +++ V A ++    +     ++PD    RS + S + QRS +S
Sbjct: 261 LTQRVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQ-SVNEQRSSSS 319

Query: 301 -----------QPESAVT----------------------VEQNMPHVSDRKVPLPRSLE 327
                      QP    T                      ++ N   + D     P    
Sbjct: 320 STGGVPGALSNQPPGPATAPQNAAAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAP 379

Query: 328 NTDKKEEQS--NYEINTKSIATTHDNYKLERLSIAVVVN--------KGRLTEVLGRSAD 377
               K  QS  N+E++     T     +L RLS+AVVV+         G ++     +AD
Sbjct: 380 YPADKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVSRAPWSAAD 439

Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF-------LENQLFNSGTVQVSFMD 430
                  LA   ++V  A G ++ RGD++++ ++ F       L    F +   Q  F D
Sbjct: 440 -------LARFTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYT---QPWFWD 489

Query: 431 ILSRHFATVINALVFLVGTLLVTFLGLHALRR-LHNIDDAKKGEV---GGKSILSPPPIS 486
           I+ +            VG + +  L    LR  L+NI   K  E+   GG + L      
Sbjct: 490 IVKQA-----------VGVIFILILVFGVLRPVLNNITSGKSKELAGFGGDAELG----G 534

Query: 487 SAVTTGLMPNDNIALDSSNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545
                G + ND ++L      +  S +    +++N+  S         ++  +  R A++
Sbjct: 535 MGGLDGELSNDRVSLGGPQSILLPSPTEGYDAQLNAIKS---------LVAEDPGRVAQV 585

Query: 546 LRKW 549
           +++W
Sbjct: 586 VKEW 589


>gi|254510010|ref|ZP_05122077.1| flagellar M-ring protein FliF [Rhodobacteraceae bacterium KLH11]
 gi|221533721|gb|EEE36709.1| flagellar M-ring protein FliF [Rhodobacteraceae bacterium KLH11]
          Length = 530

 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 136/452 (30%), Positives = 220/452 (48%), Gaps = 28/452 (6%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           SL R + +I+A  + +  +  +A    V +P    LY  LE      I  AL +  + + 
Sbjct: 10  SLDRRKQIIVAGAVALVFLGVLAMSRIVTAPSMTLLYAGLESGAAGDIVRALDQRGVAYE 69

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135
           I   G SI VP +   + R+ LA++G+P++  N GYEL D ++ FG TS M +    RA 
Sbjct: 70  I--RGGSIYVPGAQRDELRLTLASEGMPANG-NRGYELLDSLSGFGTTSQMFDAAYWRAK 126

Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY-KSAEAIRHL 194
           EGE+ARTI     +  ARVHI       F++  A PTASV +      +    A+AIR L
Sbjct: 127 EGELARTIVGSPYVSQARVHIANGSANPFQRSVA-PTASVYLVPSGAQITGDQAKAIRFL 185

Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLG 254
           VA+A+  L   +VTV+DS G ++ A E        +         ++   + + + A +G
Sbjct: 186 VASAISGLAPENVTVVDSNGAVIGAQETA-----AAADTADDKARQLREKVLRLVEARVG 240

Query: 255 VDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA-VTVEQNMP 313
             N    V  +    T+ IRE  +DP  +V  S  +    +RS+ ++ +S+ VTV  N+P
Sbjct: 241 TGNAVVEVSVDTVTKTESIRERRFDPKGRVAISTDVE---ERSDNTRNQSSDVTVASNLP 297

Query: 314 HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373
                      S  N  +  E+ NYE++   +        ++RL++AV+VN  R+ +  G
Sbjct: 298 DGDGAGGDETNS--NATQTRERVNYEVSETELEVHRAPGAIKRLTVAVLVNGARMVDGNG 355

Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF--LENQ--LFNSGTVQVSFM 429
             + +      L  + ++V++A G ++ RGD IT+ S+D   +E Q  L ++   Q   +
Sbjct: 356 IESFEPMPQPELDALEELVASAVGFDADRGDVITLKSLDLPAVEPQGTLASASIWQRIHL 415

Query: 430 DILSRHFATVINALVFLVGTLLVTFLGLHALR 461
           D +S     V+ ALV LV       LGL  +R
Sbjct: 416 DAMSLIQMAVL-ALVSLV-------LGLFVIR 439


>gi|70729030|ref|YP_258764.1| flagellar MS-ring protein [Pseudomonas fluorescens Pf-5]
 gi|68343329|gb|AAY90935.1| flagellar M-ring protein FliF [Pseudomonas fluorescens Pf-5]
          Length = 595

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 139/572 (24%), Positives = 249/572 (43%), Gaps = 86/572 (15%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92
           + +  A   +   P Y  LY  L   D  ++   L+ A+I + +  N  ++ V +  + +
Sbjct: 50  VAIGFAVVLWSQQPDYRPLYGSLAGMDAKQVMDTLASADIPYTVEPNSGALLVKADDLSR 109

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
           AR+ LAA G+     N G+E+ DK    G + FM+     R LEGE+ARTI S++ +  A
Sbjct: 110 ARLKLAAAGVAPGDGNVGFEILDKEQGLGTSQFMEATRYRRGLEGELARTISSLNNVKGA 169

Query: 153 RVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDV 207
           RVH+ +P    F +   +P+ASV++     R++ P       AI +LVA +VP L+   V
Sbjct: 170 RVHLAIPKSSVFVRDERKPSASVLVELYSGRSLEPG---QVMAIVNLVATSVPELNKSQV 226

Query: 208 TVLDSTGKLLTANEMERNIL---GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVA 264
           TV+D  G LL+ ++ E + L   GK     + ++  +   ++  L   LG D +++ V A
Sbjct: 227 TVVDQKGNLLS-DQAENSALTMAGKQFDYSRRLEGMLTQRVHNILQPVLGNDRYKAEVSA 285

Query: 265 ELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP----------- 313
           +++    +     ++PD    RS + S + QRS ++ P+       N P           
Sbjct: 286 DVDFSAVESTSEQFNPDQPALRSEQ-SVNEQRSSSNGPQGVPGALSNQPPAPASAPQTTG 344

Query: 314 ---------------------HVSDRKVPLPRSLENTDKKEEQS--NYEINTKSIATTHD 350
                                 + D     P        K +QS  N+E++     T   
Sbjct: 345 GATAAAGMVQPGQPLLDANGQQIMDPATGQPMLAPYPSDKRQQSTKNFELDRSISHTKQQ 404

Query: 351 NYKLERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
             +L RLS+AVVV ++ ++    G ++        LA   ++V  A G ++ RGD++++ 
Sbjct: 405 QGRLNRLSVAVVVDDQVKVNPANGETSRAPWSADELARFTRLVQDAVGFDASRGDSVSVI 464

Query: 410 SMDF-------LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL---LVTFLGLHA 459
           ++ F       + +  F S   Q  F DI+ +    V+  LV + G L   L    G   
Sbjct: 465 NVPFSAERGEVIADIPFYS---QPWFWDIV-KQVLGVLFILVLVFGVLRPVLNNITGGGK 520

Query: 460 LRRLHNI-DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF-SHSRNLQS 517
            + L  +  D + G +GG               G + ND ++L      +  S S    +
Sbjct: 521 NKELAGLGSDVELGGMGG-------------LDGELGNDRVSLGGPQSILLPSPSEGYDA 567

Query: 518 RINSYVSKQSDLRLLHMIEINEERFAKILRKW 549
           ++N+  S         ++  +  R A+++++W
Sbjct: 568 QLNAIKS---------LVAEDPGRVAQVVKEW 590


>gi|162147460|ref|YP_001601921.1| flagellar MS-ring protein [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786037|emb|CAP55619.1| putative flagellar M-ring protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 547

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 120/424 (28%), Positives = 210/424 (49%), Gaps = 26/424 (6%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110
           LY  +++ +   +   L++A+I    S +G+SI VP   V  AR+ LA  GLPS  +  G
Sbjct: 45  LYGDVDLGEAAEMIDDLAKAHISSTTSPDGTSIYVPRDKVASARLLLAKDGLPSGGA-VG 103

Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170
           YELFDK  +   T F Q I   RA+EGE+ R+I+ + G+   RVH+V+P    F    + 
Sbjct: 104 YELFDKSGTLTSTQFEQTINETRAMEGELERSIRLVHGVRNVRVHLVLPHRDLFSTQTSP 163

Query: 171 PTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG 228
             ASV+  I           +AI++LVAAAVP L   +++++D+ G +L       +  G
Sbjct: 164 SQASVVLDIGRAGRMAPDGIQAIQNLVAAAVPGLRPQNISIVDTRGDVLVKPGDPDSAAG 223

Query: 229 KSLSIVQAIQHEIE----MNINKALAAFLGVDNFRSAVVAELNMDTQQIREI--VYDPDS 282
           +  S ++ +QH  E     ++   L   LG  + R+   A + M T +I E    YDP+ 
Sbjct: 224 QE-STIEKLQHAEEQRLAQDVEDMLVPTLGAGHVRAR--AAVTMATDEIHETDESYDPNQ 280

Query: 283 KVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINT 342
           +V RS + + D   +  + P +  TV  N+P+ +  +    ++  + D++E+ +NYEI  
Sbjct: 281 QVLRSEQTTSDKSVNTEASPNT--TVSNNLPNANANQD--NKTGSSDDREEDTNNYEIGK 336

Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402
           +    +    ++ R+S+AV+V+     +  G+   Q    + +  I  +   A G +  R
Sbjct: 337 RVRVISQTRPRVSRISLAVMVDGMVTRDKNGKDVWQPLDTAEIQNITTLAKTAIGYDQSR 396

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSR----HFATVINALVFLVGTLLVTFLGLH 458
           GD + + SM F+ +      T   S   +LSR    + A  +  ++  +G +   F+G+ 
Sbjct: 397 GDEVNVVSMRFMPDGGLGFPT---STGSVLSRDTLIYIAEWVIPIILALGAI---FIGIR 450

Query: 459 ALRR 462
            + R
Sbjct: 451 PMLR 454


>gi|209545569|ref|YP_002277798.1| flagellar MS-ring protein [Gluconacetobacter diazotrophicus PAl 5]
 gi|209533246|gb|ACI53183.1| flagellar M-ring protein FliF [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 547

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 120/424 (28%), Positives = 210/424 (49%), Gaps = 26/424 (6%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110
           LY  +++ +   +   L++A+I    S +G+SI VP   V  AR+ LA  GLPS  +  G
Sbjct: 45  LYGDVDLGEAAEMIDDLAKAHISSTTSPDGTSIYVPRDKVASARLLLAKDGLPSGGA-VG 103

Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170
           YELFDK  +   T F Q I   RA+EGE+ R+I+ + G+   RVH+V+P    F    + 
Sbjct: 104 YELFDKSGTLTSTQFEQTINETRAMEGELERSIRLVHGVRNVRVHLVLPHRDLFSTQTSP 163

Query: 171 PTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG 228
             ASV+  I           +AI++LVAAAVP L   +++++D+ G +L       +  G
Sbjct: 164 SQASVVLDIGRAGRMAPDGIQAIQNLVAAAVPGLRPQNISIVDTRGDVLVKPGDPDSAAG 223

Query: 229 KSLSIVQAIQHEIE----MNINKALAAFLGVDNFRSAVVAELNMDTQQIREI--VYDPDS 282
           +  S ++ +QH  E     ++   L   LG  + R+   A + M T +I E    YDP+ 
Sbjct: 224 QE-STIEKLQHAEEQRLAQDVEDMLVPTLGAGHVRAR--AAVTMATDEIHETDESYDPNQ 280

Query: 283 KVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINT 342
           +V RS + + D   +  + P +  TV  N+P+ +  +    ++  + D++E+ +NYEI  
Sbjct: 281 QVLRSEQTTSDKSVNTEASPNT--TVSNNLPNANANQD--NKTGSSDDREEDTNNYEIGK 336

Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402
           +    +    ++ R+S+AV+V+     +  G+   Q    + +  I  +   A G +  R
Sbjct: 337 RVRVISQTRPRVSRISLAVMVDGMVTRDKNGKDVWQPLDTAEIQNITTLAKTAIGYDQSR 396

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSR----HFATVINALVFLVGTLLVTFLGLH 458
           GD + + SM F+ +      T   S   +LSR    + A  +  ++  +G +   F+G+ 
Sbjct: 397 GDEVNVVSMRFMPDGGLGFPT---STGSVLSRDTLIYIAEWVIPIILALGAI---FIGIR 450

Query: 459 ALRR 462
            + R
Sbjct: 451 PMLR 454


>gi|134300247|ref|YP_001113743.1| flagellar MS-ring protein [Desulfotomaculum reducens MI-1]
 gi|134052947|gb|ABO50918.1| flagellar M-ring protein FliF [Desulfotomaculum reducens MI-1]
          Length = 521

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 123/431 (28%), Positives = 208/431 (48%), Gaps = 43/431 (9%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +L++L Q ++  TS  R  ++IL S +++  ++++A    +  P+Y  L   LE  D   
Sbjct: 6   LLERLKQRWQE-TSQNRKVLVILVSTVVLAGLVYLA--MTLTKPNYAILLGDLEPKDAGD 62

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L    I +++ D G++I VP   V + R+ LA+ GL +   N G+ELFDK + FG 
Sbjct: 63  IVAQLESEKIPYQLIDQGTTILVPQEQVDEIRVKLASDGLLTGVGN-GFELFDK-SKFGE 120

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T F Q+I+  RAL+ E+ RTI  + G+  ARVH+V+P    F +     +ASV+++ + P
Sbjct: 121 TDFEQQISYQRALQEELRRTITKVEGVEQARVHLVLPRKSVFIEEEGTASASVVVK-LKP 179

Query: 183 SVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLLT----------ANEMERNILGK 229
                AE ++    L+  +V  L   +V ++D+ G +L            N     IL +
Sbjct: 180 RAKLKAEQVKGLNDLIIGSVEGLQAENVHIIDTEGNVLNDFLKDSSGTPGNGFSGTILER 239

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV-ERSI 288
              I +  + E+E  +   LA  LG +   + V AE++ +  Q       P   V ERSI
Sbjct: 240 QQQIRRTYEKELENRVQNMLAKVLGPNKAVAMVTAEMDFNQLQTNTTEVVPGQVVSERSI 299

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD--KKEEQSNYEINTKSIA 346
           +     ++               MP  S   +P   S       K ++  NY+  T++ +
Sbjct: 300 K-----EQGSDGSGGGVTGSTTQMPGQS---IPAETSTSQNSYIKTDDTKNYQHGTRTQS 351

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
                 KL +LS AVV+++    + L R+           ++ KIV+AA G + +RGD I
Sbjct: 352 EVQAPGKLIKLSTAVVLDES--VKNLDRT-----------QVEKIVTAAIGFDDQRGDQI 398

Query: 407 TITSMDFLENQ 417
           T+++M F  +Q
Sbjct: 399 TVSAMTFDRSQ 409


>gi|88704287|ref|ZP_01102001.1| flagellar M-ring protein FliF [Congregibacter litoralis KT71]
 gi|88701338|gb|EAQ98443.1| flagellar M-ring protein FliF [Congregibacter litoralis KT71]
          Length = 574

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 124/459 (27%), Positives = 211/459 (45%), Gaps = 36/459 (7%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           AI + L   F   +    TR L L   +   I L M    +V  P+Y  LY  +   D N
Sbjct: 4   AIDNNLFNRFSGFSRQPATRQLALLIGLAASIALAMGMVQWVVEPNYKPLYGTMAPEDTN 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            +  +L    +D+R+      ++VP+  V +AR+ LA  G P      G+E   +    G
Sbjct: 64  DVIASLEANGMDYRMDQRTGMVAVPAGEVHRARLLLAGDGYPRGE-GVGFESLYREQEIG 122

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI---- 177
           L+SFM++    RALE E+ARTI ++  +  ARVH+ M    +F +   +P ASVM+    
Sbjct: 123 LSSFMEQARFHRALESELARTISALDNVRGARVHLAMAKQSAFLRQREQPAASVMLNLYA 182

Query: 178 -RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIV 234
            R +N    +    I HLVA++VPNL+   V+V+D  GKLL+    + E           
Sbjct: 183 GRTLND---RQLAGIIHLVASSVPNLESEQVSVVDQQGKLLSQQGRDDEFAFTQDQFQYT 239

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
           + ++  +   I   L   LG +  R+ V A+++    +  E  Y PD++V RS + S++ 
Sbjct: 240 RQLESNLSARIVDILEPILGANAVRAQVAADVDFTRVERTEETYAPDTRV-RSEQTSEET 298

Query: 295 QRSE---------TSQP--ESAVTVEQNMPHVS-----------DRKVPLPRSLENTDKK 332
                        +++P  ++ VT +Q  P++            D    L         +
Sbjct: 299 SNQPYGGGVPGTLSNEPPIDTTVTAQQAQPNLGANAGVNTGVNVDATAQLGAIPPARTSR 358

Query: 333 EEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKI 391
               NYE++ K+I+   +    L++LSIAVV++    T   G +  +      + E+  +
Sbjct: 359 RSTVNYEMD-KTISHVRETPGTLQKLSIAVVLDYIESTADDGTTTREPMPQERIDEVTSL 417

Query: 392 VSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMD 430
           V  A G ++ RGDT+++ S  F+E        ++ S ++
Sbjct: 418 VREAVGFDAARGDTVSVISASFVEAPAIEDAVIESSILE 456


>gi|213425006|ref|ZP_03357756.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
          Length = 429

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 113/373 (30%), Positives = 182/373 (48%), Gaps = 39/373 (10%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 44  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 103

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 104 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 161

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    P+ASV +     RA++        A+ HLV++AV  L  G+VT++D +G 
Sbjct: 162 PSLFVREQKSPSASVTVTLEPGRALD---EGQISAVVHLVSSAVAGLPPGNVTLVDQSGH 218

Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  
Sbjct: 219 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 278

Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309
           E  Y P+    ++   S+    SE              ++QP    E+ +          
Sbjct: 279 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 338

Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369
           QN P  S           NT ++ E SNYE++     T  +   +ERLS+AVVVN   L 
Sbjct: 339 QNTPQTSTSTNSNNAGPRNT-QRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLA 397

Query: 370 E--VLGRSADQGK 380
           +   L  +ADQ K
Sbjct: 398 DGKPLPLTADQMK 410


>gi|160896087|ref|YP_001561669.1| flagellar M-ring protein FliF [Delftia acidovorans SPH-1]
 gi|160361671|gb|ABX33284.1| flagellar M-ring protein FliF [Delftia acidovorans SPH-1]
          Length = 566

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 113/439 (25%), Positives = 211/439 (48%), Gaps = 41/439 (9%)

Query: 15  TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF 74
           T++ R   L   ++ ++ ++   AA  F   P Y  L+  L   D   I   LS+ N+ +
Sbjct: 25  TAMDRGARLRWGAIAVLLVVALGAAAMFYRQPDYKVLFSNLSDKDGGAIVAQLSQMNVPY 84

Query: 75  RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134
           R ++ G +I +PS  V   R+ LA QGLP  S  +G+EL +  + FG+T F + +   R 
Sbjct: 85  RYTEGGGAILIPSDRVHDVRLKLATQGLPKGSV-TGFELMEN-SKFGITQFQERLNFQRG 142

Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIR 192
           LEGE+ R+IQ+++ + +ARVH+ +P+   F +   +P+ASV++      V    +   I 
Sbjct: 143 LEGELTRSIQALAAVQSARVHLALPNQNGFFREQQKPSASVLLSLYPGRVLDRTQIAGIV 202

Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLT------ANEMERNILGKSLSIVQAIQHEIEMNIN 246
           HLVA++VP +    V++LD +GKLL+      AN ++     + L+  Q I+ +    I 
Sbjct: 203 HLVASSVPEMAPTAVSILDDSGKLLSQSPDGNANAVDM----QQLNYTQQIEQQYVRRIL 258

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP----DSKVERSIRLSKDAQRSETSQP 302
           + L   +G +N ++ V AE++    +     + P    D+ V RS ++ +     +  QP
Sbjct: 259 EILEPVVGKNNVKAQVSAEMDFSQTESTSEQHRPNQSSDAGVVRSQQVVESTGEQKPPQP 318

Query: 303 ESAVTVEQNMPHVS-----DRKVPLPRSLENTD------KKEEQSNYEINTKSIATTHDN 351
                   N P  +     +   P P++ +  +      K+E  +NYE++     T    
Sbjct: 319 TGIPGATSNQPPQNASAPVNGANPAPQAADGQNAARSASKRESITNYEVDKTVRHTRGST 378

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL------------AEINKIVSAATGIN 399
             ++RL+ AVV+N   +      +A      + +            A++  +V    G +
Sbjct: 379 GSIKRLTAAVVINAPLVAAPAPAAAGAATDAATVAAAARGLTAAQQAQLLTLVRETVGYS 438

Query: 400 SRRGDTITITSMDFLENQL 418
           + RGD++ + S  F+++++
Sbjct: 439 AERGDSVNLVSTPFVQDEV 457


>gi|94269516|ref|ZP_01291482.1| Flagellar FliF M-ring protein [delta proteobacterium MLMS-1]
 gi|93451190|gb|EAT02103.1| Flagellar FliF M-ring protein [delta proteobacterium MLMS-1]
          Length = 511

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 140/524 (26%), Positives = 239/524 (45%), Gaps = 51/524 (9%)

Query: 45  SPHYDN--LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL 102
           +P  D   L+  L   D   +   L E NI +R+SD G++I VPS+ V + R+ LA +GL
Sbjct: 25  APKLDEQVLFANLSQEDAAEVVERLREMNIPYRLSDTGNAIMVPSNQVHETRLALAGEGL 84

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162
           P      G+E+FD+V   G T F+  +   RAL+GE+ARTI+    I  ARVHI  P   
Sbjct: 85  P-RGGGVGFEVFDEVG-LGTTDFVNRLNLQRALQGELARTIRQFEQIQEARVHIATPRES 142

Query: 163 SFRKIGARPTASV--MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL--T 218
            F +     TASV   +R  +       ++I +LV+ AVP L    +T++D+ G+LL   
Sbjct: 143 VFIEDEKPVTASVSLRMRGRDQLSQHQIQSIVNLVSTAVPGLSDESITLVDTAGRLLYRK 202

Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
             ++   + G  L   Q I+      +   L   +GV+  R++V A+++ +   + E ++
Sbjct: 203 RGDIGPVLSGSQLEYQQNIEESARRKVESMLEEVVGVNRVRASVTADIDFNRVNLTEEIF 262

Query: 279 DPDSKVERSIRLSKDA-QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSN 337
           DP+ +V RS ++  +A QR   +Q       +  +   +D       S  +  + +   N
Sbjct: 263 DPEEQVVRSEQVITEADQRG--NQARGIPGAKGELATFADEGGGGADS--SYQRSDVTRN 318

Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKG--RLTEVLGRSADQ--GKIDSYLAEINKIVS 393
           YEI+ ++  T      ++RLS+AV+V+    R+T+  GR+  +   + +  +    +++S
Sbjct: 319 YEISRQTRQTQEMGGGIQRLSVAVMVDGTYERVTDEEGRTTMEYRPRSEEEMEYFERLIS 378

Query: 394 AATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVT 453
            A G N  RGD + + SM F  + +       +     +++  A  +  L+   G +L  
Sbjct: 379 NAVGYNRDRGDQVEVVSMPFALSAITEPEEDPMDRWREMAQWLAMPLVYLLIAFGVMLFV 438

Query: 454 ---FLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFS 510
              FL L A + L    +AK+              S   T G    +         D+  
Sbjct: 439 VRPFLRLLAAKDL----EAKRA-------------SQRATVGRAEGEA----EDEDDLSM 477

Query: 511 HSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
             R L  +   Y   QSD           +R A ++R+W R E+
Sbjct: 478 GPRGLSDQERIYRLAQSD----------PDRAADLVRRWLREEV 511


>gi|206890854|ref|YP_002248115.1| flagellar M-ring protein FliF [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206742792|gb|ACI21849.1| flagellar M-ring protein FliF [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 505

 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 118/423 (27%), Positives = 206/423 (48%), Gaps = 26/423 (6%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           MAI D++    ++  ++   R L LA + L+   + +    ++    Y  LY  L   D 
Sbjct: 1   MAITDRVKTVLENIKNMPLNRKLALAGLTLIVFAIILTLFLWLPKQDYQVLYSNLSAEDA 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             +   L E  + +++ DN  +I VPS  V + R+ LA+QG+PS     G+E+FDK    
Sbjct: 61  GNVINKLKEKKVPYQVKDN--AIYVPSQKVHELRLELASQGIPSGG-GVGFEIFDK-TQI 116

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLT F Q +  +RAL+GE+ RTI+ +  +   RVHI +P+   F +    PTASV+++ +
Sbjct: 117 GLTEFSQRVNYIRALQGELQRTIKQLQEVDQVRVHIAIPEKSIFTEKEDHPTASVVLK-L 175

Query: 181 NPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS-LSIVQA 236
            P    S E   +I HLV+++V  L    VTV+D  G LL+A +    +   + +   + 
Sbjct: 176 KPGRALSKEQVSSIVHLVSSSVEGLSPQYVTVVDQYGNLLSAPKDSTQLAEATHIEYKRN 235

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           I+   E NI   L   +G       V A+++    +  E  YDPD+           A R
Sbjct: 236 IEKTYEKNIQSMLENIVGKGKAIVRVSADIDFSKVEKVEEKYDPDT----------IAIR 285

Query: 297 SETSQPESAVTVEQ-NMPHVSDRKVPLPRS-----LENTDKKEEQSNYEINTKSIATTHD 350
           +E    E  ++ +Q  +P V   +   P++        + K++E  NYE++         
Sbjct: 286 NEQRTQEKTMSPQQGGIPGVLSNQPGQPQTGATQQNIQSQKQQESINYEVSKSISKILQS 345

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
             +++++S+AV+++ G   E  G+     + D  + +  ++V A+ G N  RGD + + S
Sbjct: 346 TGQIKKISVAVLID-GIYKEEKGKKVYVPRSDEEIKKYQELVQASIGYNKERGDYVIVES 404

Query: 411 MDF 413
           + F
Sbjct: 405 IPF 407


>gi|94264093|ref|ZP_01287892.1| Flagellar FliF M-ring protein [delta proteobacterium MLMS-1]
 gi|93455509|gb|EAT05699.1| Flagellar FliF M-ring protein [delta proteobacterium MLMS-1]
          Length = 530

 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 140/524 (26%), Positives = 239/524 (45%), Gaps = 51/524 (9%)

Query: 45  SPHYDN--LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL 102
           +P  D   L+  L   D   +   L E NI +R+SD G++I VPS+ V + R+ LA +GL
Sbjct: 44  APKLDEQVLFANLSQEDAAEVVERLREMNIPYRLSDTGNAIMVPSNQVHETRLALAGEGL 103

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162
           P      G+E+FD+V   G T F+  +   RAL+GE+ARTI+    I  ARVHI  P   
Sbjct: 104 P-RGGGVGFEVFDEVG-LGTTDFVNRLNLQRALQGELARTIRQFEQIQEARVHIATPRES 161

Query: 163 SFRKIGARPTASV--MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL--T 218
            F +     TASV   +R  +       ++I +LV+ AVP L    +T++D+ G+LL   
Sbjct: 162 VFIEDEKPVTASVSLRMRGRDQLSQHQIQSIVNLVSTAVPGLSDESITLVDTAGRLLYRK 221

Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
             ++   + G  L   Q I+      +   L   +GV+  R++V A+++ +   + E ++
Sbjct: 222 RGDIGPVLSGSQLEYQQNIEESARRKVESMLEEVVGVNRVRASVTADIDFNRVNLTEEIF 281

Query: 279 DPDSKVERSIRLSKDA-QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSN 337
           DP+ +V RS ++  +A QR   +Q       +  +   +D       S  +  + +   N
Sbjct: 282 DPEEQVVRSEQVITEADQRG--NQARGIPGAKGELATFADEGGGGADS--SYQRSDVTRN 337

Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKG--RLTEVLGRSADQ--GKIDSYLAEINKIVS 393
           YEI+ ++  T      ++RLS+AV+V+    R+T+  GR+  +   + +  +    +++S
Sbjct: 338 YEISRQTRQTQEMGGGIQRLSVAVMVDGTYERVTDEEGRTTMEYRPRSEEEMEYFERLIS 397

Query: 394 AATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVT 453
            A G N  RGD + + SM F  + +       +     +++  A  +  L+   G +L  
Sbjct: 398 NAVGYNRDRGDQVEVVSMPFALSAITEPEEDPMDRWREMAQWLAMPLVYLLIAFGVMLFV 457

Query: 454 ---FLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFS 510
              FL L A + L    +AK+              S   T G    +         D+  
Sbjct: 458 VRPFLRLLAAKDL----EAKRA-------------SQRATVGRAEGEA----EDEDDLSM 496

Query: 511 HSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
             R L  +   Y   QSD           +R A ++R+W R E+
Sbjct: 497 GPRGLSDQERIYRLAQSD----------PDRAADLVRRWLREEV 530


>gi|126463732|ref|YP_001044846.1| flagellar MS-ring protein [Rhodobacter sphaeroides ATCC 17029]
 gi|126105396|gb|ABN78074.1| flagellar M-ring protein FliF [Rhodobacter sphaeroides ATCC 17029]
          Length = 542

 Score =  144 bits (364), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 127/450 (28%), Positives = 223/450 (49%), Gaps = 27/450 (6%)

Query: 18  GRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS 77
           GR R +++++ + +  +  +    F   P    LY  L+      +  AL      + + 
Sbjct: 27  GRRRAVVVSATVAM-FLAVLGLSQFAGRPPMALLYAGLQGPAAGEVVTALEAQGAAYEV- 84

Query: 78  DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137
             G S+ V ++   + R+ LA +GLP++ + +GYEL D ++ FG TS M +   +RA EG
Sbjct: 85  -RGDSVYVEAARRDEIRMKLAGEGLPATGA-AGYELLDGLSGFGTTSQMFDAAYLRAKEG 142

Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVA 196
           E+ARTI +   + AARVHI  P    FR+   RPTASV +     +V    A A +HLVA
Sbjct: 143 ELARTILASPKVKAARVHIAQPAAQPFRRE-QRPTASVTVTTSGGAVTADQARAFKHLVA 201

Query: 197 AAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVD 256
           +AV  L   DV+V+DS   L+ + + E++    + +  ++   E+  N+ + L A +G  
Sbjct: 202 SAVAGLQPEDVSVIDSVMGLIRSGD-EKD---SATAAGESRAAELRSNVERLLEARVGPG 257

Query: 257 NFRSAVVAELNMDTQQIREIV----YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNM 312
                 V E+++D +  RE +    +DP  +V   I      + S +++P   VTV  N+
Sbjct: 258 R----AVVEVSVDVETARESIVEKSFDPKGRV--PISSETQEKSSNSTEPSPDVTVASNL 311

Query: 313 PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372
           P    +     +S  +T +  E  N+E++            + RL++AV+V+  +     
Sbjct: 312 PEGDAKGGTGGKS--STSETRETVNFEVSQTQRELMRQPGAIRRLTVAVLVDGIKTVADD 369

Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDIL 432
           G    + + +  LA + ++VS+A G++  RGD +T+ S+ F       +GT  ++    L
Sbjct: 370 GTVGWEPRPEEELAVLRELVSSAVGLDESRGDRLTLRSLAF--ETPPEAGT--LAETGFL 425

Query: 433 SRHFATVINALVFL-VGTLLVTFLGLHALR 461
           SR  A  + +L+ + V  L+   LGL  +R
Sbjct: 426 SRLGAFDLMSLIQIGVLALVALILGLFVVR 455


>gi|124265758|ref|YP_001019762.1| flagellar biosynthesis lipoprotein [Methylibium petroleiphilum PM1]
 gi|124258533|gb|ABM93527.1| flagellar biosynthesis lipoprotein [Methylibium petroleiphilum PM1]
          Length = 567

 Score =  144 bits (364), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 116/424 (27%), Positives = 197/424 (46%), Gaps = 35/424 (8%)

Query: 18  GRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS 77
           GR   L +    LV I   M+   + +  +Y  LY  L   D   I   LS  N+ ++ +
Sbjct: 31  GRKFTLGIGLAALVGIAFAMS--MWSSQGNYKVLYAGLSDKDGGAILAQLSTMNVPYKHA 88

Query: 78  DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137
           D G++I VP+  V   R+ LA+ GLP  S   G+EL D    FG T F + +T  R LEG
Sbjct: 89  DGGAAILVPADKVHDVRLKLASAGLPKGSI-VGFELMDNAK-FGQTQFQERLTFQRGLEG 146

Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY---KSAEAIRHL 194
           E+ R+I +++ + +ARVH+ +P+   F +   +P+ASV++  ++P           I HL
Sbjct: 147 ELTRSIGALAAVQSARVHLALPNQNGFFREQQKPSASVLL-TLHPGRTLDRTQIAGIVHL 205

Query: 195 VAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQAIQHEIEMNINKALAA 251
           V+++VP +D   VTVLD+TG L+           +  + L  V  I+      +   L  
Sbjct: 206 VSSSVPEMDPKAVTVLDATGALISGAGDAGSAGGLDAQQLQYVGQIEGNYTKRVFDILEP 265

Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVE----------RSIRLSKDAQRSETSQ 301
            LG DN R+ V AE++    +     Y P+  +           RS ++S +A    ++Q
Sbjct: 266 VLGRDNLRAQVTAEVDFSQTESTSEAYAPNQGLGADGKPAAATLRSHQVS-EASGGGSAQ 324

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLE------------NTDKKEEQSNYEINTKSIATTH 349
           P        N P V     P+  S +               ++E  +NYE++     T +
Sbjct: 325 PAGVPGAASNQPPVP-ATAPVNGSAQPLQTAQSGGGSGGNSRREATTNYEVDKTVRVTRN 383

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
               ++RL+ AVV+N   +T+  G+++        + ++  +V    G N+ RGD++ + 
Sbjct: 384 ATGTIKRLNAAVVLNHRSVTDAKGKTSTTPISAEEMEKLTALVKETIGFNADRGDSVKLI 443

Query: 410 SMDF 413
           +  F
Sbjct: 444 NAPF 447


>gi|220935138|ref|YP_002514037.1| flagellar FliF M-ring protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996448|gb|ACL73050.1| flagellar FliF M-ring protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 552

 Score =  144 bits (363), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 110/391 (28%), Positives = 190/391 (48%), Gaps = 28/391 (7%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            ++  P Y  LY  L   +  +++ AL   NI +R+     +++VP+  +  AR+ LA +
Sbjct: 42  MWMTRPSYTVLYPNLAEQESGQVAEALGRHNIPYRLDSATGAVTVPARHLHDARLKLATE 101

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP  ++  G+EL ++    G +  ++     RA+EGE+AR+I ++S + +ARVH+ +P 
Sbjct: 102 GLP-RATGFGFELLEQDQGLGTSRLIENARYHRAIEGELARSIATLSSVESARVHLALPA 160

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +  ++P+ASV++     R ++ S       I HLVA++VP+L+   VTV+D  G+
Sbjct: 161 QSVFVRDRSKPSASVLVNLYAGRTLDESRIA---GIVHLVASSVPDLEPERVTVVDQRGR 217

Query: 216 LLT--ANEMERNILG-KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272
           LLT  A +++  +   + L   + ++      I   L   LG D  R+ V A+L+    +
Sbjct: 218 LLTQPAGDVDGVMASTQQLDFTRRMEESYVRRIMDILTPILGADAVRAQVAADLDFSRIE 277

Query: 273 IREIVYDPDSKVERSIRLSKDAQRSE---------TSQ-PESAVTVEQNMPHVSDRKVPL 322
                +DP+  V RS ++S+D  R           T+Q PE+ V  E+        +VP 
Sbjct: 278 RTTEAFDPEFSVVRSEQISEDESRGGGMMGVPGALTNQPPEAGVIAEEGNGANGQAQVP- 336

Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382
                 +  +    NYE++            L RLSIAVVV+        G        +
Sbjct: 337 -----GSSSRRTVRNYEVDRTVSHIREAPGGLRRLSIAVVVDHKEERNEAGELERVPFTE 391

Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413
             +  I  +V  A G ++RRGD+I + +  F
Sbjct: 392 QEMERITTLVREAVGFDARRGDSINVINASF 422


>gi|325526932|gb|EGD04395.1| flagellar MS-ring protein [Burkholderia sp. TJI49]
          Length = 367

 Score =  144 bits (363), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 96/317 (30%), Positives = 159/317 (50%), Gaps = 24/317 (7%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VPS+ V + R+ LAA G
Sbjct: 49  WSRAPDYRVLYSNLSDRDGGAIITALQQANVPYKFADAGGAILVPSNQVHETRLKLAAMG 108

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RTI+SI+ +  ARVH+ +P  
Sbjct: 109 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLAIPKP 166

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV +      V      +AI  +V++ VP++   +VT++D  G LLT 
Sbjct: 167 SVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMSAKNVTIVDQDGNLLTQ 226

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ ++   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 227 PASASGLDASQLKYVQQVEQNTQKRIDAILAPIFGAGNARSQVSADIDFSRLEQTSENYG 286

Query: 280 PDSKVERS-IRLSKDAQRSETSQ--------------PESAVTVEQNMPHVSDRKVPLPR 324
           P+   ++S IR  + +  +E +Q              P+ A     + P V+      P+
Sbjct: 287 PNGSPQQSAIRSQQTSTSTELAQSGASGVPGALSNTPPQPA-----SAPIVAGNGANAPQ 341

Query: 325 SLENTDKKEEQSNYEIN 341
           +   +D+K++ +NYE++
Sbjct: 342 TTPVSDRKDQTTNYELD 358


>gi|237799234|ref|ZP_04587695.1| flagellar MS-ring protein [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331022089|gb|EGI02146.1| flagellar MS-ring protein [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 595

 Score =  144 bits (363), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 150/605 (24%), Positives = 258/605 (42%), Gaps = 101/605 (16%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L
Sbjct: 24  LSFLENLSEMTMLRQVGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGLDSKQIMETL 83

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + ANI++ +  N  ++ V S  V +ARI LA  G+  + +N G+E+ DK    G + FM+
Sbjct: 84  TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINP 182
                R LEGE+ARTI +++ + AARVH+ +P    F +   +P+ASV++     R++ P
Sbjct: 144 ATRYRRGLEGELARTISALNNVKAARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHE 240
           S      AI +LVA +VP L    +TV+D  G LL+  A   E  + GK     + ++  
Sbjct: 204 S---QVLAIINLVATSVPELSKSQITVVDQKGTLLSDQAENSELTMAGKQFDYSRRMEGM 260

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE-- 298
           +   +   L   LG D +++ V A ++    +     ++PD    RS + S + QRS   
Sbjct: 261 LTQRVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQ-SVNEQRSSSS 319

Query: 299 ---------TSQPESAVTVEQ----------------------NMPHVSDRKVPLPRSLE 327
                    ++QP    T  Q                      N   + D     P    
Sbjct: 320 GSGGVPGALSNQPPGPATAPQTAGAGGAGAAGPIAPGQPLLDANGQQIMDPATGQPALAP 379

Query: 328 NTDKKEEQS--NYEINTKSIATTHDNYKLERLSIAVVVN--------KGRLTEVLGRSAD 377
               K  QS  N+E++     T     +L RLS+AVVV+         G ++     +AD
Sbjct: 380 FPADKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVSRAPWSAAD 439

Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF-------LENQLFNSGTVQVSFMD 430
                  LA   ++V  A G ++ RGD++++ ++ F       L    F S   Q  F D
Sbjct: 440 -------LARFTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYS---QPWFWD 489

Query: 431 ILSRHFATVINALVFLVGTLLVTFLGLHALRR-LHNIDDAKKGEV----GGKSILSPPPI 485
           ++ +            VG + +  L    LR  L+NI + K  ++    GG + L     
Sbjct: 490 LVKQA-----------VGVIFILILVFGVLRPVLNNITNGKSKQLAAFGGGDAELG---- 534

Query: 486 SSAVTTGLMPNDNIALDSSNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAK 544
                 G + ND ++L      +  S +    +++N+  S         ++  +  R A+
Sbjct: 535 GMGGLDGELSNDRVSLGGPQSILLPSPTEGYDAQLNAIKS---------LVAEDPGRVAQ 585

Query: 545 ILRKW 549
           ++++W
Sbjct: 586 VVKEW 590


>gi|126738564|ref|ZP_01754269.1| flagellar M-ring protein FliF [Roseobacter sp. SK209-2-6]
 gi|126720363|gb|EBA17069.1| flagellar M-ring protein FliF [Roseobacter sp. SK209-2-6]
          Length = 520

 Score =  144 bits (363), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 134/416 (32%), Positives = 202/416 (48%), Gaps = 25/416 (6%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110
           LY  LE      +  +L +    + +   G SI VPS    + R+ LA++GLP++    G
Sbjct: 4   LYAGLESGSAGDVVRSLEQRGTPYEV--RGGSIYVPSDQRDELRLTLASEGLPANGGK-G 60

Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170
           YEL D ++ FG TS M +    RA EGE+ARTI     I  ARVHI       F++    
Sbjct: 61  YELLDSLSGFGTTSQMFDAAYWRAKEGELARTIVGSPHISQARVHIANTGSNPFQRT-VD 119

Query: 171 PTASVMIRAI-NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK 229
           PTASV +  + +P     A AIR L+A+AV  L + +V V+D+ G L+ + E        
Sbjct: 120 PTASVSVVPLGSPITPAQANAIRFLIASAVTGLAVDNVAVIDANGALIGSTEAAAAAGAG 179

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
           S    Q+I+      + + + A +G  N    V  +   DT+ IRE   DP+S+V  S  
Sbjct: 180 SDDRSQSIRD----RVMRLVEARVGHGNAVVEVSVDTVTDTESIREKRVDPESRVAISTD 235

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
           + + A  S     E  VTV  N+P           S  NT    E+ NYEI+        
Sbjct: 236 VEERADSSSNQTGE--VTVASNLPD--GDAASGEGSKNNTSATRERVNYEISETEKEIIR 291

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
               ++RL++AV++N    T   G +  + + +  LA + +++SAA G +  RGD IT+ 
Sbjct: 292 GPGAIKRLTVAVLINGTTSTTATGETQFEPRPEEELAALRELISAAVGFDESRGDVITLK 351

Query: 410 SMDF--LENQLFNSGT-VQVSFMDILSRHFATVINALVFLVGTLLVTF-LGLHALR 461
           SM+   +E Q    GT    SFMD L  +F T+   ++ +    LV+  LGL  +R
Sbjct: 352 SMELPSIEPQ----GTEATASFMDNL--YFDTM--GIIQVAALALVSLILGLFVVR 399


>gi|317153718|ref|YP_004121766.1| flagellar M-ring protein FliF [Desulfovibrio aespoeensis Aspo-2]
 gi|316943969|gb|ADU63020.1| flagellar M-ring protein FliF [Desulfovibrio aespoeensis Aspo-2]
          Length = 531

 Score =  144 bits (362), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 121/441 (27%), Positives = 214/441 (48%), Gaps = 20/441 (4%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
           F+   T+  R  I  LA  +++   L +   +++N P Y  L   L   D +RI   L  
Sbjct: 15  FWSDRTAAQRILIGGLAVSVVIAFALMI---YWMNKPDYKVLMTNLYPEDASRIVGMLQA 71

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
               + + DNG +I VP+  V + R+ +A +G        G+E+FD V   G T F+Q I
Sbjct: 72  EKEQYVLDDNGKTILVPADRVYELRLKVAGEG-NLHGQGIGFEIFDNVQ-IGQTDFVQHI 129

Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE 189
              RAL+GE++RTI     I  ARVH+V+P    F +    P+AS++++  + +   + E
Sbjct: 130 NFQRALQGELSRTITEFPQIEQARVHLVIPKKSLFIEDQMPPSASIILQLKDNAKLAANE 189

Query: 190 --AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS---LSIVQAIQHEIEMN 244
              + +LV+ AV  L+  ++TV D  G+ L   E +   L  S   L     I++  +  
Sbjct: 190 VQGVVNLVSMAVEGLEPKNITVTDMKGRPLYTPEDDSGGLALSNTQLEYKADIENTTQRR 249

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           I + L   +G +   + V A+L+   + IR+  YDPD  V RS     + +  ET+    
Sbjct: 250 IMELLGPVVGPEKVIARVNADLDFSQKTIRKESYDPDGSVVRS-----ETRSEETTA--G 302

Query: 305 AVTVEQNMPHVSDRKVPL--PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
           A ++    P  + R       R+ +++ ++   +N+EIN +         +L+RLS+AV+
Sbjct: 303 AASLAGGEPDANFRGDGFTGTRTTQDSTRESRTTNFEINKQEENIIAPVGELKRLSVAVI 362

Query: 363 VNKGRLTEV-LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           V+    TE   G+S    +    L  I  +++ A G +S RGD+I ++++ F E  L++ 
Sbjct: 363 VDGTWQTEEDTGKSVYVPRSAEELERIKNLIAGAVGFDSVRGDSIEVSNISFGEPSLYDG 422

Query: 422 GTVQVSFMDILSRHFATVINA 442
            ++  + ++   R     +N 
Sbjct: 423 DSLMRTMLEYAQRLGKPFLNG 443


>gi|121997300|ref|YP_001002087.1| flagellar M-ring protein FliF [Halorhodospira halophila SL1]
 gi|121588705|gb|ABM61285.1| flagellar M-ring protein FliF [Halorhodospira halophila SL1]
          Length = 595

 Score =  144 bits (362), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 113/409 (27%), Positives = 191/409 (46%), Gaps = 23/409 (5%)

Query: 21  RILILASVILVPIMLFMAARFFVNSP-HYDNLYVKLEVSDVNRISVALSEANIDFRISDN 79
           R L L + +L    L +A  F+   P     LY  L   D   +  AL E  +     + 
Sbjct: 59  RKLGLGAGLLAVAGLGVAIFFWAQEPAELRTLYADLSSDDAAEVINALEEQGVRVEFDER 118

Query: 80  GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEI 139
              I VP + V +ARI LA++GLP  S   GYE+ +    FG++ FM+     RALE E+
Sbjct: 119 TGDIKVPENAVHRARIFLASEGLPRGS-GFGYEMLEDDPGFGVSEFMEHARFDRALETEL 177

Query: 140 ARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAA 197
           AR+I+++ G+V+ARVH+  P    F +      ASV++          +  E I HLVA+
Sbjct: 178 ARSIETLRGVVSARVHLDDPQESVFVRDRRDAKASVVLELDQDRQLPDRQVEGIIHLVAS 237

Query: 198 AVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255
           AV +L+ G+V+V+D  G+LLTA +   E     +   + + ++  I+  +   +   +G 
Sbjct: 238 AVSDLEHGNVSVVDHRGRLLTAEDEPTEATRSAQQFELTRRLEERIQRRVEDMVEPIIGP 297

Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV 315
           D  R+ V A LN D ++  E ++DP+S   RS       Q SE S       +   +P  
Sbjct: 298 DRVRAQVSARLNFDERRQIEELFDPESSAIRS------EQMSERSGGGGQWPI--GIPGA 349

Query: 316 SDRKVPLPRSLENTD---------KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
              + P P +L+  +           +E  N+E+             ++RL++ V+V+  
Sbjct: 350 LTNQPPGPGTLDGEELEGGGGTPFSSDETRNWEVGRTLSEVQPAIGVIDRLTVGVLVDHR 409

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
            +    G    +   D  +  +  +V  A G ++ RGD +++ ++ F E
Sbjct: 410 YVQNEDGEVVREALSDEEIQTLENLVQDAVGYDADRGDAVSVATVPFAE 458


>gi|323698502|ref|ZP_08110414.1| flagellar M-ring protein FliF [Desulfovibrio sp. ND132]
 gi|323458434|gb|EGB14299.1| flagellar M-ring protein FliF [Desulfovibrio desulfuricans ND132]
          Length = 530

 Score =  144 bits (362), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 119/436 (27%), Positives = 220/436 (50%), Gaps = 31/436 (7%)

Query: 21  RILI--LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           RILI  L + +++   L +   +++N P Y  L   L   D +R+   L     D+++ +
Sbjct: 24  RILIGGLTAAVVISFALMI---YWMNKPDYRVLMTNLYPEDASRVVGMLQAQKEDYKLEN 80

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           NG++I VP+  V + R+ +A +G        G+E+FD+V   G T F+Q +   RAL+GE
Sbjct: 81  NGTTIMVPADRVYELRLKVAGEG-NLHGQGIGFEIFDEVQ-IGQTDFVQHVNYQRALQGE 138

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVA 196
           +ARTI     +  ARVH+V+P    F +    P+AS++++       +  E   I +LV+
Sbjct: 139 LARTITEFPIVDKARVHLVIPQKSLFIEDQVAPSASIVLQLKGEGKLEPDEIKGIVNLVS 198

Query: 197 AAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQA-----IQHEIEMNINKALAA 251
            AV  L+  ++TV D  G  L   E +    G ++S  Q      ++ +++  I + L  
Sbjct: 199 MAVEGLEPKNITVTDMKGHPLYTPEDQST--GLAMSNAQLLHKADVEGKLQRRILELLGP 256

Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311
            +G D   + V A+L+   + +R+ VYDP+S V RS     + +  ET+    A  +   
Sbjct: 257 AVGPDKVIARVNADLDFSQRTVRKEVYDPNSAVVRS-----ETRNEETTS--GAADLGGG 309

Query: 312 MPHVSDRKVPL--PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369
            P V+ R       ++ +++ ++   +N+EI+ +         +L+RL++AV+V+    T
Sbjct: 310 APDVNFRGDGFSGTKTTQDSTRESRTTNFEIDKQEENIITPVGELKRLTVAVIVDGTWQT 369

Query: 370 EVLGRSADQGKIDSYLAEINKI---VSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
           +  G+   Q  +     EIN+I   +  A G +++RGDTI ++++ F E QL +  ++  
Sbjct: 370 DADGK---QVYVPRSAEEINRIRTLIENAVGFDAQRGDTIEVSNISFGEPQLADGDSLMR 426

Query: 427 SFMDILSRHFATVINA 442
           + ++   R     +N 
Sbjct: 427 TMLEYAQRLGKPFLNG 442


>gi|323703169|ref|ZP_08114822.1| flagellar M-ring protein FliF [Desulfotomaculum nigrificans DSM
           574]
 gi|323531828|gb|EGB21714.1| flagellar M-ring protein FliF [Desulfotomaculum nigrificans DSM
           574]
          Length = 514

 Score =  144 bits (362), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 119/429 (27%), Positives = 210/429 (48%), Gaps = 39/429 (9%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +LD+L Q ++  T+  +  ++ILA  +++  + ++     +  P Y  L   LE  D   
Sbjct: 6   LLDKLKQRWRE-TNQNKKALIILAGAVVLAGVFYLV--LTLTRPRYAVLLGDLEPRDAGN 62

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L    I ++++D G +I VP   V + RI LA++GL  +    G+ELFDK + FG 
Sbjct: 63  IVAQLESDKIPYQLTDQGKTIMVPEDQVDEVRIKLASKGL-LNGMGQGFELFDK-SKFGE 120

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T F Q+++  RAL+ E+ RTI S+ G+  ARVH+V+P    F      P+ASV+I+ + P
Sbjct: 121 TDFEQQVSYQRALQEELRRTITSVEGVEQARVHLVIPTKSVFLDDQGTPSASVVIK-LKP 179

Query: 183 SVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLL---------TANEMERNILGKS 230
                 E ++    L+  +V  L   +V ++D+ G +L          A       + + 
Sbjct: 180 GASLKPEQVKGLNDLIIGSVEGLKPENVHIIDTEGHVLNDFLKDSSDVAGAFGGTAVERQ 239

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV-ERSIR 289
             I +A + E+E  + + L   LG +   + V A+L+ + QQ       P   V ERS +
Sbjct: 240 QQIRRAYEKELENRVQQMLTKLLGPNKAVAMVTADLDFNQQQTNTTEVLPGPVVSERSTK 299

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
            S +      +   +A    Q++P +++ +        +  K ++  NY+  T+  +   
Sbjct: 300 ESGNDAGGGGTAGSTAQMPGQSVPGINNGQ-------SSYTKSDDIKNYQNGTRVQSVVQ 352

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
              K+ RLS AVV+++        ++ D+        +I  IV+AA G N +RGD IT++
Sbjct: 353 APGKVLRLSTAVVLDESV------KNLDK-------TQIQDIVTAAIGFNPQRGDQITVS 399

Query: 410 SMDFLENQL 418
           +M F  ++L
Sbjct: 400 TMTFDHSEL 408


>gi|213028767|ref|ZP_03343214.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 377

 Score =  144 bits (362), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 107/355 (30%), Positives = 174/355 (49%), Gaps = 37/355 (10%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 15  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 74

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 75  GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 132

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    P+ASV +     RA++        A+ HLV++AV  L  G+VT++D +G 
Sbjct: 133 PSLFVREQKSPSASVTVTLEPGRALD---EGQISAVVHLVSSAVAGLPPGNVTLVDQSGH 189

Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  
Sbjct: 190 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 249

Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAVTVE------- 309
           E  Y P+    ++   S+    SE              ++QP    E+ +          
Sbjct: 250 EEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNA 309

Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
           QN P  S           NT ++ E SNYE++     T  +   +ERLS+AVVVN
Sbjct: 310 QNTPQTSTSTNSNNAGPRNT-QRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVN 363


>gi|307721566|ref|YP_003892706.1| flagellar M-ring protein FliF [Sulfurimonas autotrophica DSM 16294]
 gi|306979659|gb|ADN09694.1| flagellar M-ring protein FliF [Sulfurimonas autotrophica DSM 16294]
          Length = 569

 Score =  144 bits (362), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 135/450 (30%), Positives = 234/450 (52%), Gaps = 41/450 (9%)

Query: 19  RTRILILASVI-----LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73
           + +I+I A+V+     L+ +++F A +   +   Y+ L+  L  +D  ++   L + NI 
Sbjct: 20  QQKIIIAAAVVGIVAFLIFLVVFTAKK--TSGSAYEVLFDALTPADAAKVVEQLEKDNIT 77

Query: 74  FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
           ++I  N + I VP  +V K RI +A+ G+P +S   G+ELFDK   FG TSF Q+I  +R
Sbjct: 78  YKIEAN-NVIKVPRDVVYKERISIASLGIPKNS-GVGFELFDK-QEFGATSFDQKIKHLR 134

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSA 188
           ALEGE++RTI ++S +  A V + +P    F      PTASVM+     R + P   K  
Sbjct: 135 ALEGELSRTITALSPVEKATVSLALPKDTLFVSKQVDPTASVMVQLADGRMLTP---KQI 191

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ---AIQHEI--EM 243
             I++LV+AAVP L   +V ++DS G  L  N+    +    LS+VQ    I+ E   + 
Sbjct: 192 RGIKNLVSAAVPKLKSSNVMLIDSDGVTLGDNDEMAQM--SELSVVQQKYKIKEEKKRQE 249

Query: 244 NINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
            I   +A F+ G D   + V  E +   +      YDP++ V RS ++++  ++ E S P
Sbjct: 250 KIIDVIAPFVGGKDKVVAQVTIEFDFSQKNSTSEKYDPENVV-RSEQVNE--EKREGSSP 306

Query: 303 ESAVTVEQNMPHVSD-RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIA 360
           +    V   + ++   + +   +++E   K    +NYE+  K+++TT   + +++R++ A
Sbjct: 307 KEVGGVPGTVSNIGPVQGLASNKTVEKYSKNSGTTNYEVG-KTVSTTKSQFARIKRITAA 365

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYL----AEINKIVSAAT---GINSRRGDTITITSMDF 413
           VVV+ G+    + +  +  +   Y+    A+IN + S A+   GI+  RGD I++ ++ F
Sbjct: 366 VVVD-GKYKTKVDKDGNPTEEMEYVPLDDADINALTSLASRSIGIDPNRGDQISVQNLQF 424

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINAL 443
            E  L N G   V+   I S  +    + L
Sbjct: 425 -ERALTNKGVQGVNQAIIFSETYLAPFSGL 453


>gi|188997543|ref|YP_001931794.1| flagellar M-ring protein FliF [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932610|gb|ACD67240.1| flagellar M-ring protein FliF [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 536

 Score =  144 bits (362), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 112/386 (29%), Positives = 204/386 (52%), Gaps = 34/386 (8%)

Query: 48  YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           Y  LY  L   D   I  ALS+ NI +++  NG+ I VP   V  AR+ LAA+GLPS   
Sbjct: 51  YAVLYSGLAPDDAGNILTALSQENIPYKLEGNGTIIMVPKDKVYDARLKLAAKGLPSGKV 110

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
             G+E+F++    G T F + +  +RA+EGE+ RTI+ +  ++ A+V+I +P    F + 
Sbjct: 111 -VGFEIFEE-PKLGTTQFQENVNYIRAVEGELTRTIKQLDAVMDAKVNIALPKDSIFVRQ 168

Query: 168 GARPTASVMIRAINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLLT--ANEM 222
                ASV+I+ + P    + E I+    LV+ AVPNL   +VTV+D+ G++L+   +E 
Sbjct: 169 EDEAKASVIIK-LWPDKDLTKEQIKAIVFLVSRAVPNLKPENVTVVDNRGRVLSDLIDEE 227

Query: 223 ERNILG-KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI--REIVYD 279
             N  G K++ + + ++ ++E +I   LA  +G +  R  V A + ++T ++  ++ +YD
Sbjct: 228 SANESGDKTVDLKRKLERQLEKDIQSMLAKVVGPE--RVVVKASVELETGKVHQKDEIYD 285

Query: 280 PDSKV---ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQS 336
           PD      ER I+ S+  +    + P    T   N+P V +  V +    +  +K +  +
Sbjct: 286 PDKVAVVSERKIKESETEESQTINAPPGTPT---NVPPVMNTPV-MGGGGKKKEKSDITT 341

Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSAD---------QGKIDSYLAE 387
           NY+++   I T    + ++++S+ V+++ G+  E+  +  +         Q ++ SY   
Sbjct: 342 NYDVSKSMIETQKPLFTIKKVSVGVMID-GKYKEIKDKDGNIIKQFEPRSQQELQSY--- 397

Query: 388 INKIVSAATGINSRRGDTITITSMDF 413
              ++ +A G +  RGD +T+ S+ F
Sbjct: 398 -ENLIKSAIGFDPNRGDQVTVISVPF 422


>gi|159045804|ref|YP_001534598.1| flagellar MS-ring protein [Dinoroseobacter shibae DFL 12]
 gi|157913564|gb|ABV94997.1| flagellar MS-ring protein FliF [Dinoroseobacter shibae DFL 12]
          Length = 558

 Score =  143 bits (361), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 133/461 (28%), Positives = 225/461 (48%), Gaps = 29/461 (6%)

Query: 9   QFFKSGTSLG-RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           Q   + T LG R +++ +A+V+ V   L   +R  + +P Y  LY  LE +    +   L
Sbjct: 5   QIRTTWTGLGLRNQLIAIAAVLGVFGALLALSRTAL-APDYALLYSGLEPAAAGEVIANL 63

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
            +  I  ++   G+ I V  +   + RI LAA+GLP++   +GYEL D ++ FG TS M 
Sbjct: 64  EQRGIAHQV--RGTGIYVDRAQQDRLRIALAAEGLPAAG-GAGYELLDSLSGFGTTSQMF 120

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR--PTASVMIRAINPSVY 185
           +    RA EGE+ARTI S + + +ARVH+      S R   AR  PTASV +     S+ 
Sbjct: 121 DAAYWRAKEGELARTIASSASVRSARVHV---SAASSRPFEARKEPTASVFLTPARGSLS 177

Query: 186 KS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN 244
              A+A+R+LV++A+  +   +V+++D+    +   E   + + +  +   A++    + 
Sbjct: 178 GGQADALRYLVSSAIAGMRPENVSIIDAVSGTMLTGEGPASAIAEQTTKADALK----LR 233

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           I + L A +GV N    V  E   D ++I E V+DP+  V  S R + ++    +   E 
Sbjct: 234 IERLLEARVGVGNAFVEVNIETERDRERIVERVFDPNGTVPVS-RETTESTLQSSRDSEG 292

Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
           +V+V  N+P   D      +  +N  +  E+ NYE++             +RL++AV+VN
Sbjct: 293 SVSVASNLPD-GDANAESAKDAQNETETRERINYEVSETQREIERGPGATKRLTVAVLVN 351

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF----LENQLFN 420
                   G  +   + D  +A++ ++V +  G +  RGD IT+ SM+       + + +
Sbjct: 352 GIPSVSEDGTVSFTPRPDREMADLEELVKSTVGFDETRGDVITLRSMEMPGSAAPDPVES 411

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461
           SG      +D +S     VI      + TL   FLGL  LR
Sbjct: 412 SGWFAPQPVDTMS-----VIQIAALALVTL---FLGLFVLR 444


>gi|54294647|ref|YP_127062.1| flagellar MS-ring protein [Legionella pneumophila str. Lens]
 gi|53754479|emb|CAH15963.1| Flagellar M-ring protein [Legionella pneumophila str. Lens]
          Length = 544

 Score =  143 bits (361), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 118/425 (27%), Positives = 209/425 (49%), Gaps = 50/425 (11%)

Query: 25  LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSIS 84
           LA+ I + + + + +R     P Y  LY +L   D + I   L   +IDF+I  N   + 
Sbjct: 29  LAASIAIGVAVVLWSR----DPSYVPLYSQLNAQDSSEILTVLERNSIDFKIDKNNGLLM 84

Query: 85  VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS-FGLTSFMQEITRVRALEGEIARTI 143
           VP+  +  AR+ LAAQGLP  ++  G++L       F  + FM+     +ALE E+ARTI
Sbjct: 85  VPADELQSARLKLAAQGLPRDTA-IGHDLLGSSGGVFNTSQFMENARYKQALEAELARTI 143

Query: 144 QSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRH-------LVA 196
              + I +ARVH+ +P   +F +    P+ASV I      VY   E  +H       LVA
Sbjct: 144 SKFNNIKSARVHLAIPRESAFVRDSQEPSASVFI-----DVYSGFEIKKHTIAAIVNLVA 198

Query: 197 AAVPNLDMGDVTVLDSTGKLLTA-------NEMERNILGKSLSIVQAIQHEIEMNINKAL 249
           +++PNL  G VTV+D  G+LL         +E ER      L   Q ++H+    I   L
Sbjct: 199 SSIPNLSTGRVTVVDQDGQLLNEGSGYNLFSETER-----FLDYRQNLEHQYAQKIQDIL 253

Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPD---SKVERSIRLSKDAQR---------S 297
              LG    R+ V A+++  + +  + +++P+    + E++++ S++A           S
Sbjct: 254 TPILGYGRVRAKVSADIDFTSYEQTQELFNPELSALRSEQTMQESRNASNEASGVPGTLS 313

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPR-----SLENTD-KKEEQSNYEINTKSIATTHDN 351
            T QP S++  ++N P  +     LP+      ++  D + +   N+E++     T +  
Sbjct: 314 NTPQPNSSLG-QKNNPQQNATPNNLPQQTSSDQMQAKDVRMQTTKNFELDKTISHTKNQP 372

Query: 352 YKLERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
             ++RLS+AV+V N+  + +   +   +      + +I  +VS A G+N +RGD++ + +
Sbjct: 373 GTIKRLSVAVLVDNRPVMNDKTKKLEKKPLTKEEIEQIKLLVSDAIGLNVKRGDSLNVIN 432

Query: 411 MDFLE 415
             F++
Sbjct: 433 SSFVK 437


>gi|290475703|ref|YP_003468592.1| flagellar basal-body MS(membrane and supramembrane)-ring and collar
           protein [Xenorhabdus bovienii SS-2004]
 gi|289175025|emb|CBJ81828.1| flagellar biosynthesis; basal-body MS(membrane and
           supramembrane)-ring and collar protein [Xenorhabdus
           bovienii SS-2004]
          Length = 569

 Score =  143 bits (361), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 121/426 (28%), Positives = 202/426 (47%), Gaps = 60/426 (14%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92
           I + +A   ++ SP Y  LY  L   D   I   L++ NI +R ++N S++ +P+  V +
Sbjct: 38  IAIVVALFLWMRSPDYRVLYSNLSDKDGGEIVTQLTQMNIPYRFAENSSALMIPADKVHE 97

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
           AR+ LA QGLP   +  GYEL DK   FG++ F +++   RA EGE++RTI+S+  + +A
Sbjct: 98  ARLKLAQQGLPKGGA-VGYELLDK-EKFGISQFSEQVNYNRAKEGELSRTIESLDPVESA 155

Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVL 210
           RV + +P    F +    PTASV +R +        +  AI HLV++ V  L   +V ++
Sbjct: 156 RVILSIPKPSLFVREQKSPTASVTVRLLQGRTLDEGQVNAIAHLVSSGVAGLPPSNVKIV 215

Query: 211 DSTGKLLT---ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELN 267
           D +G+LLT   AN ++ N     L  +Q ++   +  I   L   +G  N  + V A+L+
Sbjct: 216 DQSGRLLTQADANGLDLNT--TQLKYIQEVEKRFQHRIETILTPVVGRGNVHAQVTAQLD 273

Query: 268 MDTQQIREIVYDPDSKVERSIRLSKDAQRSE--------------TSQPESAVTVEQNMP 313
              ++     Y P+     +  LSK +  SE              ++QP +A +     P
Sbjct: 274 FSRREQTAEEYKPNQPPNEAAVLSKQSSSSEQSGGSLVGGVPGALSNQPSAAPSAPIEKP 333

Query: 314 HVSDRKVPLPRSLENTDKKEEQ------SNYE-INTKSIATTHD---NYK---------- 353
           +        P +    D+K +Q      +NYE +   S    HD   NY+          
Sbjct: 334 N--------PDTKGKGDEKSDQNRNSTYNNYERLVNNSRNNRHDELINYQVGKTISHTQL 385

Query: 354 ----LERLSIAVVVNKGRLTEVLGRSADQGK--IDSYLAEINKIVSAATGINSRRGDTIT 407
               +ERLS+AVV+N        G +  + K      L++I  +   A G +++RGD++ 
Sbjct: 386 QVGAVERLSVAVVIN---YATTQGENGPETKALTPEQLSQIEALTREAMGFSTKRGDSLN 442

Query: 408 ITSMDF 413
           + +  F
Sbjct: 443 VVNTPF 448


>gi|119385376|ref|YP_916432.1| flagellar MS-ring protein [Paracoccus denitrificans PD1222]
 gi|119375143|gb|ABL70736.1| flagellar M-ring protein FliF [Paracoccus denitrificans PD1222]
          Length = 526

 Score =  143 bits (360), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 118/399 (29%), Positives = 203/399 (50%), Gaps = 28/399 (7%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           +  + P    LY  L+      +  A+ ++ + + I   G SI V  S   + R+ LA +
Sbjct: 39  WMASRPGMALLYSGLDPQQSGAVMAAVEKSGVPYEI--RGDSIWVAESRRDELRMTLAGE 96

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLPS+   SGYE+ D ++ FG TS M +    RA EGE+ARTI ++  + AARVH+ +P 
Sbjct: 97  GLPSAG-GSGYEILDGMSGFGTTSQMFDAAYWRAKEGELARTILALPNVKAARVHLAVPQ 155

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
              +R+  A  TASV +      + ++ A+A++ LV++ VP +    V V+DS   ++++
Sbjct: 156 GRGYRRE-AEATASVTLTTDGTPISRNQAKALKFLVSSGVPGMTADRVAVIDSERGVISS 214

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD----TQQIRE 275
            E   +  G+        + E++ N+ + LAA +G  N     + EL++D    ++ + E
Sbjct: 215 GE---DFDGEDR------EAEMKRNVERILAAHVGHGN----AIVELHLDVVNESELLTE 261

Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ 335
             +DP  +   S    + A +S  +Q + AVT   N+P   D      RS  +  +  ++
Sbjct: 262 QRFDPQERALISQESEESADQSSNAQ-QGAVTAASNLPEGQDSAGDQSRS--SRSETRQR 318

Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395
           SN+E++  +   T       RL++AV+VN    TE  G +    + ++ L  I ++V++A
Sbjct: 319 SNFEVSKITREVTRQPGATRRLTVAVLVNGVARTEANGEATLVPREETELQAIRELVASA 378

Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSR 434
            G +  RGD IT+ S+ F    L  +GT+  S    LSR
Sbjct: 379 VGFDEGRGDAITVKSLPFA--SLSQAGTL-ASAGGFLSR 414


>gi|239817137|ref|YP_002946047.1| flagellar MS-ring protein [Variovorax paradoxus S110]
 gi|239803714|gb|ACS20781.1| flagellar M-ring protein FliF [Variovorax paradoxus S110]
          Length = 560

 Score =  143 bits (360), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 116/457 (25%), Positives = 200/457 (43%), Gaps = 42/457 (9%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  LY  +   D   I  +L + N+ ++ ++ G +I V    V + R+ LA+Q
Sbjct: 47  LWSRAPDYGVLYTNVTDRDGGAIIASLQQMNVPYKFAEGGGAILVARDRVPEVRLKLASQ 106

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP      G+EL D    FG ++F +++   R LEGE+AR+++SI  + +AR+H+ +P 
Sbjct: 107 GLPKGG-GVGFELMDN-QKFGTSNFAEQVNYQRGLEGELARSVESIGSVESARIHLALPK 164

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +   +P+ASV++     R+I+        AI H+V+++VP+LD   VTV+D  G 
Sbjct: 165 PSLFVRDQKKPSASVILTLHRGRSIDEG---QVSAIVHMVSSSVPDLDAKSVTVVDQRGN 221

Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LL+ AN   R +    L   Q I+      I   L   +G  N R+ V AE++    +  
Sbjct: 222 LLSAANAGARGLDVSQLKYAQEIEQGYIRRIEAILQPLVGASNVRAQVAAEIDFSVVERT 281

Query: 275 EIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRS--------- 325
           E  Y P+    +  R +    +  +   +   T    +P     + P   S         
Sbjct: 282 EESYKPN----QDPRAAAVRSQQSSESMQQGATPPGGVPGALSNQPPQTPSAPITAPPNA 337

Query: 326 ----------------LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369
                              + +K+  +NYE++            ++RLS+AVVVN     
Sbjct: 338 AAAAPKAAATATAASTAPGSSRKDTTTNYELDRSIRHVQQGAGGVKRLSVAVVVNHRDTA 397

Query: 370 EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL-ENQLFNSGTVQVSF 428
           +  G+   +    + + +I  +V  A G +  RGD++ + +  F  E     +G     +
Sbjct: 398 DSAGKPGQRALTPAEIEQIRNLVKEAMGFSQERGDSLNVVNSAFAREGGDAEAGPALPFW 457

Query: 429 MDILSRHFATVINALVFLVG-TLLVTFLGLHALRRLH 464
            D  +   A  I   + + G  L   F  L  L R H
Sbjct: 458 RDPANLGLAMSIAQYLLMAGLALFAWFAVLRPLLRKH 494


>gi|54297673|ref|YP_124042.1| flagellar MS-ring protein [Legionella pneumophila str. Paris]
 gi|53751458|emb|CAH12876.1| Flagellar M-ring protein [Legionella pneumophila str. Paris]
          Length = 544

 Score =  143 bits (360), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 118/425 (27%), Positives = 209/425 (49%), Gaps = 50/425 (11%)

Query: 25  LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSIS 84
           LA+ I + + + + +R     P Y  LY +L   D + I   L   +IDF+I  N   + 
Sbjct: 29  LAASIAIGVAVVLWSR----DPSYVPLYSQLNAQDSSEIMTILERNSIDFKIDKNNGLLM 84

Query: 85  VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS-FGLTSFMQEITRVRALEGEIARTI 143
           VP+  +  AR+ LAAQGLP  ++  G++L       F  + FM+     +ALE E+ARTI
Sbjct: 85  VPADELQSARLKLAAQGLPRDTA-IGHDLLGSSGGVFNTSQFMENARYKQALEAELARTI 143

Query: 144 QSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRH-------LVA 196
              + I +ARVH+ +P   +F +    P+ASV I      VY   E  +H       LVA
Sbjct: 144 SKFNNIKSARVHLAIPRESAFVRDSQEPSASVFI-----DVYSGFEIKKHTIAAIVNLVA 198

Query: 197 AAVPNLDMGDVTVLDSTGKLLTA-------NEMERNILGKSLSIVQAIQHEIEMNINKAL 249
           +++PNL  G VTV+D  G+LL         +E ER      L   Q ++H+    I   L
Sbjct: 199 SSIPNLSAGRVTVVDQDGQLLNEGSGYNLFSETER-----FLDYRQNLEHQYAQKIQDIL 253

Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPD---SKVERSIRLSKDAQR---------S 297
              LG    R+ V A+++  + +  + +++P+    + E++++ S++A           S
Sbjct: 254 TPILGYGRVRAKVSADIDFTSYEQTQELFNPELSALRSEQTMQESRNASNEASGVPGTLS 313

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPR-----SLENTD-KKEEQSNYEINTKSIATTHDN 351
            T QP S++  ++N P  +     LP+      ++  D + +   N+E++     T +  
Sbjct: 314 NTPQPNSSLG-QKNNPQQNATPNNLPQQTSSDQMQAKDVRMQTTKNFELDKTISHTKNQP 372

Query: 352 YKLERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
             ++RLS+AV+V N+  + +   +   +      + +I  +VS A G+N +RGD++ + +
Sbjct: 373 GTIKRLSVAVLVDNRPVMNDKTKKLEKKPLTKEEIEQIKLLVSDAIGLNVKRGDSLNVIN 432

Query: 411 MDFLE 415
             F++
Sbjct: 433 SSFVK 437


>gi|114569237|ref|YP_755917.1| flagellar MS-ring protein [Maricaulis maris MCS10]
 gi|114339699|gb|ABI64979.1| flagellar M-ring protein FliF [Maricaulis maris MCS10]
          Length = 551

 Score =  143 bits (360), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 151/563 (26%), Positives = 249/563 (44%), Gaps = 33/563 (5%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++ L + F++  +   T I  LA  +   +M F  A   +       LY  L+ S+    
Sbjct: 1   MNALFEQFRAFGAGRLTAIFGLAVGVAAALMYFSGA---MGGASQSLLYSGLDPSEAVAT 57

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           S  L +ANI + I + G++I V    V +AR+ +A+ G P S ++ GYE+FD+ +SFG  
Sbjct: 58  SQLLDQANIPYEIREGGTAIYVNRDQVDEARVRVASNG-PLSGASVGYEIFDRQDSFGQN 116

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
           SF+Q +   RA EGE+ARTIQS++ + +ARVH+ +P+   F +    PTA+V I      
Sbjct: 117 SFVQNLNAKRATEGELARTIQSLNYVNSARVHLNLPERRLFSRDQQSPTAAVTISTAGRL 176

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS--IVQAIQHEI 241
             +    IR++VA++      G V++ D  G+ L +        G+S    I+   + EI
Sbjct: 177 NSEQVRVIRNIVASSSGIAPTG-VSIADDRGRQLASGSD-----GQSAGSMIMDERRGEI 230

Query: 242 E----MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           E     NI   +   +G    R  V AEL+  +       YDP+  V RS    +D    
Sbjct: 231 EAQLRQNILDIVEGVVGAGAARVQVNAELDRQSITQSSETYDPNGAVIRSRERGEDLSND 290

Query: 298 ETSQPESAVTVEQNMPHVSD-RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
           +    ++ V+  +N+P   D        S  N +   E+ NYEI++ +     +   + R
Sbjct: 291 QDGANQNRVSASENLPDAGDGAGAEGSGSRSNRESTSERVNYEISSTTRTEIIEAGAINR 350

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG---DTITITSMDF 413
           LS+AV V+    T   G    + +  S +  I  +V +A G  S  G   D +T++ ++F
Sbjct: 351 LSVAVAVDGVLETAEDGTVTWRERPQSEIDRIEALVRSAMGFVSEPGVRQDLLTVSQIEF 410

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL-------GLHALRRLHNI 466
                   GT   S M              V  V  LL+ FL       G   +     +
Sbjct: 411 ARTDPL-LGTAAASGMSFSKSDIMRAAEIGVMFVTALLIIFLVARPLVKGASGMAMPQGL 469

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
             A  G  G    ++  P  +A+ +   PN  +AL S+             +I+  V   
Sbjct: 470 ALAGAGMDG---AVAGAPAPTALPS--QPNRPVALPSAGGAGGREDSIDIEKIDGQVKAS 524

Query: 527 SDLRLLHMIEINEERFAKILRKW 549
           S  ++ +++E + E    ILR W
Sbjct: 525 SLKKVANIVESHPEESISILRTW 547


>gi|145297444|ref|YP_001140285.1| flagellar MS-ring protein [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142850216|gb|ABO88537.1| lateral flagellar M-ring protein [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 584

 Score =  143 bits (360), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 113/419 (26%), Positives = 206/419 (49%), Gaps = 50/419 (11%)

Query: 22  ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81
           I +LA+++   I++ +    + +S +Y  LY K E+ D   I   L +  + FR+  +  
Sbjct: 40  IALLAAIVAGTIVVIL----WTSSKNYVPLYGKQELYDTANIMEMLEKEQVPFRLEKSSG 95

Query: 82  SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
            I VP S +   R+ LAA+G+  ++  SG E  D V   G + FM+      ALEGE+AR
Sbjct: 96  QILVPESQLAHVRMALAARGV-RAAMPSGLEGLDTVTGLGTSEFMEGARYRHALEGELAR 154

Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIG---ARPTASVMI-----RAINPSVYKSAEAIRH 193
           TI S+  + +ARVH+ +P    F  +G    +P+ASVM+     +A+ P      EAI +
Sbjct: 155 TIISLDAVRSARVHLAIPKRTLF--VGRDEEKPSASVMMDLQPGQAMEPG---QVEAIAN 209

Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK----SLSIVQAIQHEIEMNINKAL 249
           LVA ++  +  G VT++D  G+LL+A   ++   GK     +  V+ ++  I    +  L
Sbjct: 210 LVAGSISGMKPGAVTIVDQAGQLLSAELGDKAGFGKQSVQQMEYVRKLEQYIRQRASDML 269

Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS--------- 300
              LG  NFR  + A++N +  +  +   DP   V      +K++ +S+ +         
Sbjct: 270 YPMLGTSNFRVQIAADVNFNAVEETQQQLDPQGVV------TKESTKSDKTIDALALGIP 323

Query: 301 ------QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
                  PE+    EQ   +  +      ++   T+++E    YE +   + T +   +L
Sbjct: 324 GALSNRPPETTPKNEQPAQNQVEANTDTQKNDSRTERQEVSKQYENSRTIVHTRYQQGRL 383

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           E++++++++N+    +  G SA+Q      L +I ++V  + G ++ RGD I++   DF
Sbjct: 384 EKMNVSILLNQQSAPKD-GWSAEQ------LEQIRQMVERSVGFDNARGDQISLQVFDF 435


>gi|303248346|ref|ZP_07334607.1| flagellar M-ring protein FliF [Desulfovibrio fructosovorans JJ]
 gi|302490254|gb|EFL50168.1| flagellar M-ring protein FliF [Desulfovibrio fructosovorans JJ]
          Length = 546

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 119/434 (27%), Positives = 208/434 (47%), Gaps = 40/434 (9%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
            ++L+Q++ + T+  R   ++L  +    +  F+   +F+N P    LY +L   D  R+
Sbjct: 9   FEKLIQYWSNRTAAQR---ILLGGLAASTVAAFLVMIYFLNQPEMRVLYTRLAPEDAARV 65

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L  +   + + DNG++I VP+  V + R+ +A +GL       G+ELFD++   G T
Sbjct: 66  VEQLKASKTPYELRDNGATIMVPAESVYEQRLKIAGEGL-MHGQGVGFELFDQLK-VGQT 123

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
            F+Q I   RAL+GE+ARTI     +  ARVH+V+P    F +   + +ASV++      
Sbjct: 124 DFVQRINYTRALQGELARTITEFPQVEKARVHLVLPQKSLFIEEQKQASASVVLTLKRGQ 183

Query: 184 VY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ---AIQ 238
               K  + I +LV+ AV  L    +T+ D+TG+ L   + +  + G S S  +     +
Sbjct: 184 KLDAKQLQGIVNLVSMAVEGLTPEHITITDTTGQSLYQPQGDSGLAGMSNSQFEFKNTYE 243

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ--IREIVYDPDSKVERSIRLSKDAQR 296
             +E  I + L   +G    RS V A +++D  Q  IR+ +YDP+  V RS + +++   
Sbjct: 244 SNLENRIEQLLTPIVGPG--RSIVKANVDLDFSQRTIRKELYDPNVTVVRSEQKNEETTS 301

Query: 297 SETSQPESAVTVEQNMPHVSDRKVP----------LPRSLENTDKKEEQSNYEINTKSIA 346
              +   S  TV    P      VP             S + + ++   +N+EIN +   
Sbjct: 302 GTAAVDASGQTV---TPRGGGAAVPNNNFQGSGYSGTESTQKSSRQNSTTNFEINKEEQN 358

Query: 347 TTHDNYKLERLSIAVVVNKGRLTE-------VLGRSADQGKIDSYLAEINKIVSAATGIN 399
                  L+R SIAV+V+   + +        + R A++      L  I ++V+ A G++
Sbjct: 359 VVTPVGDLKRQSIAVIVDGTYVKDKDKETYTFVPRKAEE------LERIKQVVARAAGLD 412

Query: 400 SRRGDTITITSMDF 413
             RGD I ++S +F
Sbjct: 413 PSRGDEIQVSSFEF 426


>gi|120554914|ref|YP_959265.1| flagellar MS-ring protein [Marinobacter aquaeolei VT8]
 gi|120324763|gb|ABM19078.1| flagellar M-ring protein FliF [Marinobacter aquaeolei VT8]
          Length = 568

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 114/422 (27%), Positives = 204/422 (48%), Gaps = 33/422 (7%)

Query: 17  LGRTRILILASVILV-----PIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71
           LG  R+ +L  V L+      + L +A   +   P+Y  +   L   +   ++  L    
Sbjct: 30  LGFNRLNLLRQVGLMVGLAASVALGVAVVLWAQEPNYQPVVGDLSAYNPQDVTTILDSNG 89

Query: 72  IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131
           ID+++     ++ VPS  V  AR+ LAA+G+ +     GYEL D+    G + FM+ I+ 
Sbjct: 90  IDYKMDPRTGALLVPSEQVYSARLKLAAEGV-TDQKTMGYELLDQERGLGTSQFMETISY 148

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYK 186
            R LEGE+ARTI ++ G+  ARVH+ +P+   F +    PTASV +     R   P   +
Sbjct: 149 RRGLEGELARTIAAMRGVRNARVHLAIPERSVFIRDAREPTASVFLEVFAGRRPEPEQIR 208

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSLSIVQAIQHEIEMN 244
              AI +LVA ++P ++   VTV+D  G LLT +E+  E + +         ++  +   
Sbjct: 209 ---AIVNLVAGSIPMMNRDQVTVVDQNGNLLTGDEVQAETDRMKDQYEYTSRVEERLTRR 265

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQR------- 296
           +   +   +G   +R+ V A+L+    +  E +Y+P+ +  RS R LS+  QR       
Sbjct: 266 VASLIGPIVGEGRYRAEVTADLDFSAVERAEELYNPEQQAVRSERELSE--QRVAGAQGG 323

Query: 297 ---SETSQPESAVTV-EQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
              +  +QP  A TV EQ      +   P    +    + E   NYE++     T  +  
Sbjct: 324 IPGALANQPPGAATVPEQATAAPGEDGAPAAPPVNV--RSESTRNYELDRTVSYTRQELG 381

Query: 353 KLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
            ++R+++A+ V+  ++ +   G  + Q   ++ L  ++ +V  A G ++ RGD++T+ + 
Sbjct: 382 AVKRVTVALAVDDMKVVDPETGEVSYQPWPEAELQRLSMLVRDAVGYSASRGDSVTVMNT 441

Query: 412 DF 413
            F
Sbjct: 442 AF 443


>gi|271500086|ref|YP_003333111.1| flagellar M-ring protein FliF [Dickeya dadantii Ech586]
 gi|270343641|gb|ACZ76406.1| flagellar M-ring protein FliF [Dickeya dadantii Ech586]
          Length = 574

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 127/474 (26%), Positives = 218/474 (45%), Gaps = 61/474 (12%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  LY  L   D   I   L + NI +R ++NG++I +P+  V + R+ LA Q
Sbjct: 46  LWARGPDYRALYTNLNERDGGSIVSELGKMNIPYRFAENGAAILIPADKVYETRLKLAQQ 105

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F ++I   RALEGE+ART++++  I +ARVH+ +P 
Sbjct: 106 GLPKGGA-VGFELLDQ-EKFGISQFSEQINYQRALEGELARTMETLGPIQSARVHLAIPK 163

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    P+A+V +     RA++ S      AI +LV+++V  L    VTV+D TGK
Sbjct: 164 PSLFVREQKSPSAAVTVTLQPGRALDDS---QINAITYLVSSSVAGLPADKVTVVDQTGK 220

Query: 216 LLTANEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT N+   R++    L     ++   +  I   L   +G  N  + V A+++   ++  
Sbjct: 221 LLTQNDGSGRDLNAAQLKYANEVESNYQRRIEAILTPVVGAGNVHAQVTAQIDFANREQT 280

Query: 275 EIVYDPDSKVE----RSIRLSKDAQRSE----------TSQPESAVTVEQNMP------- 313
           +  Y P+        RS + S+  QR            ++ P  A T   + P       
Sbjct: 281 DEQYQPNQTPNQAAVRSQQTSQSDQRGGPNVGGVPGALSNTPTPAPTAPISTPPTNNANN 340

Query: 314 ---------------HVSDRKVPLPRSLENT--DKKEEQSNYEINTKSIATTHDNYKLER 356
                            ++ +     S   T   ++++  NYE++     T      ++R
Sbjct: 341 ANNANNTNNANNANAAGNNTQTSASNSANQTFNSRRDQTINYEVDRTIRHTKQSTGSVQR 400

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           LS+AVVVN  +  +  G+ A     D  L +I  +V  + G +S RGD++ + +  F   
Sbjct: 401 LSVAVVVNYTQGED--GKPA--ALSDEQLKKIEALVRESMGFSSDRGDSVNVVNTPFT-- 454

Query: 417 QLFNSGTVQVSFMDILSRHFATVINA----LVFLVGTLLVTFLGLHALRRLHNI 466
            + ++   ++ F    +  F  +I A    LV +VG ++   L    L+R   I
Sbjct: 455 -VTDTSAGELPFWKKQA-FFDLLIEAGRWLLVLIVGWIMYRKLVRPQLQRRSQI 506


>gi|92114078|ref|YP_574006.1| flagellar M-ring protein FliF [Chromohalobacter salexigens DSM
           3043]
 gi|91797168|gb|ABE59307.1| flagellar M-ring protein FliF [Chromohalobacter salexigens DSM
           3043]
          Length = 594

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 128/469 (27%), Positives = 201/469 (42%), Gaps = 54/469 (11%)

Query: 35  LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKAR 94
           L M AR    +P Y  LY  L  +D  +I   L    + +  S+NG ++ VP+  V K R
Sbjct: 54  LLMWAR----APEYRVLYSTLTDADGGKIVSELDSMGVPYEFSENGQALLVPADQVNKLR 109

Query: 95  IHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARV 154
           + LA QGLP  +S  GYEL D+  SFG++ F + +   RALEGE+ARTI+ +  +  ARV
Sbjct: 110 LQLAEQGLP-EASGVGYELMDE-QSFGISQFTEHVNYQRALEGELARTIEDLGPVSKARV 167

Query: 155 HIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDS 212
           H+ M     F +     +ASVM+      V      +AI H+V+++V  L + DV V+D 
Sbjct: 168 HLAMAKPSVFVRESEPASASVMLDLQRGRVLGEGQVQAIMHMVSSSVSELAISDVAVVDQ 227

Query: 213 TGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ 271
           TG+LL+ A++    + G  L  V  ++      I   LA  LG  N ++ V A+L+   +
Sbjct: 228 TGRLLSPASDGNEALNGSQLDYVARVERNYAERIESILAPILGARNVKAEVSAQLDFSER 287

Query: 272 QIREIVYDPDSKV--------ERSIRLSKDAQ------RSETSQPESAVTVEQNMPHVSD 317
           +     Y P+           + S+  S D         + ++QP        N P   D
Sbjct: 288 EGTSETYGPNQPPNEAAVRSEQTSLSYSGDGDLAMGIPGALSNQPPGTAASPINAPQEDD 347

Query: 318 RKVPLPRSLENTDKKEEQS-------------------NYEINTKSIATTHDNYKLERLS 358
                    ++   ++E                     NYE++       H+   +ERL+
Sbjct: 348 AGDGEGEDAQDDGNQDEDGEATTQENATLGRTSRDNTINYEVDRTVEHIQHETGTIERLN 407

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
            A+VVN     +  G        D  +A I  +   A G +  RGD + +       N  
Sbjct: 408 AAIVVNYRDGVDEDGNPTRVPLSDQEIANIRSLAQQAIGFSQARGDQLEVV------NSP 461

Query: 419 FNSGTVQ----VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
           F+  + Q      +   L    AT +    +L+  L+  FL    LR L
Sbjct: 462 FDDTSEQRPEPAWWESPLLWSLATTLGQ--YLLIGLVALFLWFKVLRPL 508


>gi|52841987|ref|YP_095786.1| flagellar MS-ring protein [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|148359304|ref|YP_001250511.1| flagellar basal body M-ring protein FliF [Legionella pneumophila
           str. Corby]
 gi|52629098|gb|AAU27839.1| flagellar basal body M-ring protein FliF [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|148281077|gb|ABQ55165.1| flagellar basal body M-ring protein FliF [Legionella pneumophila
           str. Corby]
 gi|307610459|emb|CBX00030.1| flagellar M-ring protein [Legionella pneumophila 130b]
          Length = 544

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 118/425 (27%), Positives = 209/425 (49%), Gaps = 50/425 (11%)

Query: 25  LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSIS 84
           LA+ I + + + + +R     P Y  LY +L   D + I   L   +IDF+I  N   + 
Sbjct: 29  LAASIAIGVAVVLWSR----DPSYVPLYSQLNAQDSSEILTILERNSIDFKIDKNNGLLM 84

Query: 85  VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS-FGLTSFMQEITRVRALEGEIARTI 143
           VP+  +  AR+ LAAQGLP  ++  G++L       F  + FM+     +ALE E+ARTI
Sbjct: 85  VPADELQSARLKLAAQGLPRDTA-IGHDLLGSSGGVFNTSQFMENARYRQALEAELARTI 143

Query: 144 QSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRH-------LVA 196
              + I +ARVH+ +P   +F +    P+ASV I      VY   E  +H       LVA
Sbjct: 144 SKFNNIKSARVHLAIPRESAFVRDSQEPSASVFI-----DVYSGFEIKKHTIAAIVNLVA 198

Query: 197 AAVPNLDMGDVTVLDSTGKLLTA-------NEMERNILGKSLSIVQAIQHEIEMNINKAL 249
           +++PNL  G VTV+D  G+LL         +E ER      L   Q ++H+    I   L
Sbjct: 199 SSIPNLSAGRVTVVDQDGQLLNEGSGYNLFSETER-----FLDYRQNLEHQYAQKIQDIL 253

Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPD---SKVERSIRLSKDAQR---------S 297
              LG    R+ V A+++  + +  + +++P+    + E++++ S++A           S
Sbjct: 254 TPILGYGRVRAKVSADIDFTSYEQTQELFNPELSALRSEQTMQESRNASNEASGVPGTLS 313

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPR-----SLENTD-KKEEQSNYEINTKSIATTHDN 351
            T QP S++  ++N P  +     LP+      ++  D + +   N+E++     T +  
Sbjct: 314 NTPQPNSSLG-QKNNPQQNATPNNLPQQTSSDQMQAKDVRMQTTKNFELDKTISHTKNQP 372

Query: 352 YKLERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
             ++RLS+AV+V N+  + +   +   +      + +I  +VS A G+N +RGD++ + +
Sbjct: 373 GTIKRLSVAVLVDNRPVMNDKTKKLEKKPLTKEEIEQIKLLVSDAIGLNVKRGDSLNVIN 432

Query: 411 MDFLE 415
             F++
Sbjct: 433 SSFVK 437


>gi|294636866|ref|ZP_06715198.1| flagellar M-ring protein FliF [Edwardsiella tarda ATCC 23685]
 gi|291089927|gb|EFE22488.1| flagellar M-ring protein FliF [Edwardsiella tarda ATCC 23685]
          Length = 419

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 110/380 (28%), Positives = 190/380 (50%), Gaps = 45/380 (11%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           L+LAS + + I++ +A   +  +P Y  LY  +   D   I   LS+ NI +R ++NG++
Sbjct: 35  LLLASAVAIAIVVVLA--LWARAPDYRVLYSNISDRDGGAIVTQLSQMNIPYRFANNGTT 92

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           + VP+  V   R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE+ART
Sbjct: 93  LMVPADKVYDLRLKLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELART 150

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAA 197
           I+++  +V+ARVH+ +P    F +   +P+ASV +     RA++        AI ++V++
Sbjct: 151 IETLGPVVSARVHLALPKPSLFVREQKQPSASVTLTLEPGRALDDG---QINAIVYMVSS 207

Query: 198 AVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVD 256
           +V  L  G+VTV+D  G LLT  +   R++    L     ++  ++  I   L   LG  
Sbjct: 208 SVAGLPPGNVTVVDQFGHLLTQPDGTGRDLNAAQLKFTSEVEGRLQRRIETILQPMLGSG 267

Query: 257 NFRSAVVAELNMDTQQIREIVYDPDS-KVERSIR-------------LSKDAQRSETSQP 302
           N  + V A+L+   ++  +  Y P+    + +IR             L+     + +++P
Sbjct: 268 NVHAQVTAQLDFANREQTDEEYKPNQLPNQAAIRSQQISQSDQSGGQLNGGVPGALSNEP 327

Query: 303 ESAVTVEQNMPHVS------DRKVPLP---RSLENTD---------KKEEQSNYEINTKS 344
               T   + P  S      +R   +P    +L N           +++E +NYE++   
Sbjct: 328 APPATGNIDKPRNSTGTNGRNRNESMPSRSSTLSNNGRLASRNENIRRDETTNYEVDRTI 387

Query: 345 IATTHDNYKLERLSIAVVVN 364
             T      +ERLS+AVVVN
Sbjct: 388 RHTQERAGGIERLSVAVVVN 407


>gi|296107351|ref|YP_003619051.1| flagellar M-ring protein FliF [Legionella pneumophila 2300/99
           Alcoy]
 gi|295649252|gb|ADG25099.1| flagellar M-ring protein FliF [Legionella pneumophila 2300/99
           Alcoy]
          Length = 544

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 118/425 (27%), Positives = 209/425 (49%), Gaps = 50/425 (11%)

Query: 25  LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSIS 84
           LA+ I + + + + +R     P Y  LY +L   D + I   L   +IDF+I  N   + 
Sbjct: 29  LAASIAIGVAVVLWSR----DPSYVPLYSQLNAQDSSEILTILERNSIDFKIDKNNGLLM 84

Query: 85  VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS-FGLTSFMQEITRVRALEGEIARTI 143
           VP+  +  AR+ LAAQGLP  ++  G++L       F  + FM+     +ALE E+ARTI
Sbjct: 85  VPADELQSARLKLAAQGLPRDTA-IGHDLLGSSGGVFNTSQFMENARYRQALEAELARTI 143

Query: 144 QSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRH-------LVA 196
              + I +ARVH+ +P   +F +    P+ASV I      VY   E  +H       LVA
Sbjct: 144 SKFNNIKSARVHLAIPRESAFVRDSQEPSASVFI-----DVYSGFEIKKHTIAAIVNLVA 198

Query: 197 AAVPNLDMGDVTVLDSTGKLLTA-------NEMERNILGKSLSIVQAIQHEIEMNINKAL 249
           +++PNL  G VTV+D  G+LL         +E ER      L   Q ++H+    I   L
Sbjct: 199 SSIPNLSAGRVTVVDQDGQLLNEGSGYNLFSETER-----FLDYRQNLEHQYAQKIQDIL 253

Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPD---SKVERSIRLSKDAQR---------S 297
              LG    R+ V A+++  + +  + +++P+    + E++++ S++A           S
Sbjct: 254 TPILGYGRVRAKVSADIDFTSYEQTQELFNPELSALRSEQTMQESRNASNEASGVPGTLS 313

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPR-----SLENTD-KKEEQSNYEINTKSIATTHDN 351
            T QP S++  ++N P  +     LP+      ++  D + +   N+E++     T +  
Sbjct: 314 NTPQPNSSLG-QKNNPQQNATPNNLPQQTSSDQMQAKDVRMQTTKNFELDKTISHTKNQP 372

Query: 352 YKLERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
             ++RLS+AV+V N+  + +   +   +      + +I  +VS A G+N +RGD++ + +
Sbjct: 373 GTIKRLSVAVLVDNRPVMNDKTKKLEKKPLTKEEIEQIKLLVSDAIGLNVKRGDSLNVIN 432

Query: 411 MDFLE 415
             F++
Sbjct: 433 SSFVK 437


>gi|260429390|ref|ZP_05783367.1| flagellar M-ring protein FliF [Citreicella sp. SE45]
 gi|260420013|gb|EEX13266.1| flagellar M-ring protein FliF [Citreicella sp. SE45]
          Length = 541

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 137/470 (29%), Positives = 231/470 (49%), Gaps = 42/470 (8%)

Query: 4   LDQLLQFFKSGTSLG-RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           + QL Q ++    LG R RI++LA+ + V + +   AR    +P    LY  LE      
Sbjct: 1   MQQLAQIWEG---LGARRRIIVLAATVGVILAVLTMARM-AGTPSMALLYAGLENGAAGE 56

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +  AL +  + + +   G +I VP       R+ LA++GLP++S N GYEL D ++ FG 
Sbjct: 57  VVEALEQRGVVYEV--RGGAIFVPEMERDALRMTLASEGLPANS-NKGYELLDGLSGFGT 113

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           TS M +    RA EGE+ARTI +   + +ARVHI       F++   +P+AS+ + +   
Sbjct: 114 TSQMFDAAYWRAKEGELARTIVASPYVASARVHIANSSANPFQR-DVQPSASISVTSTGE 172

Query: 183 SVYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEI 241
            +  + A A+++LVA+AVP L    V V+D  G L+ A +     +G S    +     +
Sbjct: 173 VLSPAQARALKYLVASAVPGLVPEQVAVIDGKGGLIGAEDE----VG-SGPTAEDKADLL 227

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDT----QQIREIVYDPDSKVERSIRLSKDA-QR 296
              + + + A +G+ N     V E+++DT    + IR+  +DP+++V     +S D  ++
Sbjct: 228 RDRVQRLVDARVGLGN----AVVEVSVDTVTESETIRQRQFDPENRV----VISTDTEEQ 279

Query: 297 SETSQPESA--VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
           S TSQ   +  VTV  N+P           S  N  +  E+ NYE++      T     +
Sbjct: 280 SSTSQDTGSGNVTVASNLPDGQAGGGDSSSSQSN--ETRERVNYEVSETMREVTRVPGAI 337

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           +RL++AV+VN    T   G        D+ L  +  +V++A G   +RGD ITI S+ F 
Sbjct: 338 KRLTVAVLVNGTYDTAADGTQLFVPLPDNELTALRDLVASAVGFEEQRGDEITIRSLPFE 397

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFL---VGTLLVTFLGLHALR 461
             +   +G ++  +       FA  ++ ++ +   V  L+   LGL  +R
Sbjct: 398 RPEGLGTGPIEPDW-------FALQLDPMMLIQMAVLALVALILGLFVVR 440


>gi|86157820|ref|YP_464605.1| flagellar M-ring protein FliF [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774331|gb|ABC81168.1| flagellar M-ring protein FliF [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 533

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 115/414 (27%), Positives = 201/414 (48%), Gaps = 26/414 (6%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L +LL     G  L    +L+  ++  + +    A R   ++  Y   +  L   D    
Sbjct: 11  LPRLLGALPGGLKL----VLVAGALAAIGVAALTAVR---SAEAYQYAFTNLTPEDSAEA 63

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           + AL  A + +R+   GS+++VP+S V  AR+ LA  GLP      G+E+FD+    G++
Sbjct: 64  AGALGAAGVPYRLEAGGSALAVPASRVYDARLLLAGAGLPRGG-GVGFEIFDR-GDLGVS 121

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
            F Q++   RA EGE+ARTI  ++ + +ARVH+ +P+ G +R    RP A+ ++  + P 
Sbjct: 122 EFTQKVNLRRATEGELARTISRLAQVRSARVHLTLPEKGLYRDQD-RPAAAAVVVNLQPG 180

Query: 184 ---VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240
                +    IRHLV++AVP L    V+V+D  G++++    +   LG+++   + ++ +
Sbjct: 181 RTLGQREISGIRHLVSSAVPGLAPAGVSVVDGRGEVIS----DEGALGEAIGYQRRMERD 236

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           +E  I   L   +G     + V A L+    Q    V DPDS   RS R       S+ +
Sbjct: 237 LERRIVDLLGQAVGAGAVVARVTASLDQTEIQSSAQVLDPDSATLRSERKLTQQSSSDGA 296

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
            P        N P       P  R   +   +++  NY+++T +  +     +LERLS+A
Sbjct: 297 GPAGVAGAAANQPLAPPAPAPGARGRSSASTEDQTRNYDVSTTTTTSVARVPRLERLSVA 356

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           V+V+          +  Q + D+ +A + ++   A G ++ RGDT  I+S  F+
Sbjct: 357 VLVDG---------AGGQPRADAEIARLGELAKRAVGFDADRGDTFEISSSPFV 401


>gi|171057703|ref|YP_001790052.1| flagellar M-ring protein FliF [Leptothrix cholodnii SP-6]
 gi|170775148|gb|ACB33287.1| flagellar M-ring protein FliF [Leptothrix cholodnii SP-6]
          Length = 576

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 120/430 (27%), Positives = 195/430 (45%), Gaps = 38/430 (8%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
           +G  LGR   L LA  +L  I L   A F+    +   L+  L   D   I   L++ N+
Sbjct: 28  AGLPLGRK--LALAGGVLALIGLLAMAVFWNTGNNDKVLFANLSDKDGGAIVAQLTQMNV 85

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
            ++ ++ G++I VP+  V   R+ LA  GLP  S+  G+EL D    FG T F + +   
Sbjct: 86  PYKFTEGGTAILVPAEKVHDVRLKLAQAGLPKGST-VGFELMDNAR-FGTTQFQERLNFQ 143

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--A 190
           R LEGE+ R+I ++S + AARVH+ +P+   F +   +P+ASV++          A+   
Sbjct: 144 RGLEGELVRSITALSAVEAARVHLALPNQNGFFRDQQKPSASVLLTLHPGRTLDRAQLAG 203

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLT--------ANEMERNILGKSLSIVQAIQHEIE 242
           I HLV+A+V  L+   V+VLD +G LL         A      +  + L  V  I+    
Sbjct: 204 IVHLVSASVAELNPKAVSVLDQSGSLLAGPPEGMAGAAGGTNGLDAQQLQYVNQIETVYT 263

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD-SKVERSIRLSKDAQRSETSQ 301
             I   L   LG DN R+ V AE++    +     + P+      ++R    AQ +E S 
Sbjct: 264 KRILDILEPVLGRDNLRAQVSAEIDFSQTESTSEEFKPNQGDAPAAVR---SAQSTEQSN 320

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLE------------------NTDKKEEQSNYEINTK 343
           P +A+     +P     + P P +                     T ++E  +NYE++  
Sbjct: 321 PGAAMPA--GVPGAQSNQPPTPATAPINGQAQQMQAAQGGVGSNGTARREAVTNYEVDKT 378

Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403
              T   + +++RLS AVVVN   +T+  G           L ++  +V    G +  RG
Sbjct: 379 VRVTRAASGQVKRLSAAVVVNSRSVTDKKGNVQVVPLTPEELDKLTALVQETVGFSKDRG 438

Query: 404 DTITITSMDF 413
           D++ + +  F
Sbjct: 439 DSVKVINAPF 448


>gi|124516311|gb|EAY57819.1| Flagellar M-ring protein FliF [Leptospirillum rubarum]
          Length = 531

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 130/454 (28%), Positives = 209/454 (46%), Gaps = 25/454 (5%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110
           L+  L   D   I   L+   + + +S  GS I VPS  V   R+ LA +GLP     +G
Sbjct: 52  LFSNLSPGDSMAIQGRLNRLGVPYHLSKKGSVIRVPSGQVYALRMELADEGLPRHH-GAG 110

Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170
           ++LF+   S   T F+Q +  + AL+ E+ RTI+ ++ I  ARV IV+P    F +   +
Sbjct: 111 FDLFNH-PSLATTDFVQRVQYLEALQTELDRTIEEMTPIALARVSIVLPRRTVFLREPDQ 169

Query: 171 PTASVMIRAINPSV---YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL 227
             ASV++R + P +   +     I HLVA AVP L    VTV+D+ G++L  N   R ++
Sbjct: 170 SHASVLVR-LKPGMTLEHPQVNGIVHLVANAVPGLSASRVTVVDTEGQIL--NRKRRGLV 226

Query: 228 GKSLSIVQ-AIQHEIEMNINKALAAF----LGVDNFRSAVVAELNMDTQQIREIVYDPDS 282
              L+  Q + Q E+E ++   L +     LG D     V AELN    +     +DP+ 
Sbjct: 227 PGELTEAQLSYQREVEQSVQHQLQSMLDKVLGPDQSVVRVSAELNFRQVEKSSRTWDPNG 286

Query: 283 KVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT-----DKKEEQSN 337
           +V +     ++        P     V  NMP  + +    P   +NT      KK++ ++
Sbjct: 287 RVLKDREQIREKSTGSRILPIGVPGVLSNMPGANGKVASPPMGPKNTAETRYSKKKQIAH 346

Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLT---EVLGRSADQGKIDSYLAEINKIVSA 394
           Y ++      T     L R+S++V+VN   +T   +   ++  Q +    + +  +IV  
Sbjct: 347 YHVSRTDQHVTEPVGNLRRISVSVLVNAVPVTIQSKTGPKTVMQPRDPKEIQDFTRIVQN 406

Query: 395 ATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTF 454
           A G +S RGD + + S+ F      +   +  SF + L+  F  ++   +FL G LLV F
Sbjct: 407 AIGFDSARGDQVVVLSVPFSGTAAPSPKNIDQSFQEKLA-PFVPLLE--IFLGGLLLVIF 463

Query: 455 LGLHALRRLHNIDDAKKGEVGGKSILSPPPISSA 488
             L  LR L       K EV        PP+  A
Sbjct: 464 -SLLVLRPLLKAMVQWKPEVSPMQPAEGPPLGKA 496


>gi|307131589|ref|YP_003883605.1| flagellar M-ring protein fliF [Dickeya dadantii 3937]
 gi|306529118|gb|ADM99048.1| Flagellar M-ring protein fliF [Dickeya dadantii 3937]
          Length = 573

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 115/434 (26%), Positives = 210/434 (48%), Gaps = 54/434 (12%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           L++AS   + I++ ++   +   P Y  LY  L   D   I   L + NI +R +++G++
Sbjct: 30  LLIASAATIAIVVALS--LWARGPDYRVLYTNLNERDGGSIVSELGKMNIPYRFTESGAA 87

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I +PS  V + R+ LA QGLP   +  G+EL D+   FG++ F ++I   RALEGE+ART
Sbjct: 88  IMIPSDKVYETRLKLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQINYQRALEGELART 145

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAA 197
           ++++  I  ARVH+ +P    F +    P+A+V +     RA++ S      AI +LV++
Sbjct: 146 METLGPIQNARVHLAIPKPSLFVREQKSPSAAVTVTLQPGRALDDS---QISAITYLVSS 202

Query: 198 AVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVD 256
           +V  L    VTV+D TGKLLT N+   R++    L     ++   +  I   L   +G  
Sbjct: 203 SVAGLPADKVTVVDQTGKLLTQNDSSGRDLNAAQLKYANEVESNYQRRIEAILTPVVGAG 262

Query: 257 NFRSAVVAELNMDTQQIREIVYDPD-SKVERSIRLSKDAQRSE-------------TSQP 302
           N  + V A+++  +++  +  Y P+ +  + ++R  +++Q  +             ++ P
Sbjct: 263 NVHAQVTAQIDFASREQTDEQYQPNQTPNQAAVRSQQNSQSDQRGGPNVGGVPGALSNTP 322

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSL----------------------ENTDKKEEQS-NYE 339
             A T   + P  ++       +                       +  + + +Q+ NYE
Sbjct: 323 TPAPTAPISTPPANNANNANNANNANNANANTAGTNTQTSAGNAANQTYNSRHDQTINYE 382

Query: 340 INTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN 399
           ++     T  +   ++RLS+AVVVN  +  +  G+ A     D  L +I  +V  + G +
Sbjct: 383 VDRTIRHTKQNTGNVQRLSVAVVVNYTQGED--GKPAALN--DDQLKKIEALVRESMGFS 438

Query: 400 SRRGDTITITSMDF 413
           + RGDT+ + +  F
Sbjct: 439 NDRGDTLNVVNTPF 452


>gi|90021833|ref|YP_527660.1| flagellar MS-ring protein [Saccharophagus degradans 2-40]
 gi|89951433|gb|ABD81448.1| flagellar M-ring protein FliF [Saccharophagus degradans 2-40]
          Length = 556

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 112/399 (28%), Positives = 189/399 (47%), Gaps = 23/399 (5%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92
           + +  A   +     Y  LY  L+  D + +   L    I ++I  +  ++ V    V +
Sbjct: 36  VAIGFAVVLWSQGEDYKPLYGSLDRLDSSEVGAILDFNEIPYKIDGSTGALLVAVDEVHR 95

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
           AR+ LA  G+   +S +GYEL D+    G + FM+     R +EGE+ARTI SI+ +  A
Sbjct: 96  ARLVLAENGIQGDNS-TGYELLDQEQPLGTSQFMEATRYKRGIEGELARTIASINSVRGA 154

Query: 153 RVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDV 207
           RVH+ +P    F   G +P+ASV +     R I P   K  + I +LVA+++P L + +V
Sbjct: 155 RVHLAIPKRSVFVGDGRKPSASVFLDLYPGRPIKP---KQIQGIANLVASSIPELQVENV 211

Query: 208 TVLDSTGKLLT---ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVA 264
           TV+D  G LLT   A + +  I G+ L   Q ++  + M + + L+  LG  NF++ V A
Sbjct: 212 TVVDQKGNLLTTGIAEDKDLLIAGQHLEYTQKVEDGMIMRVRRLLSPILGDQNFKTEVAA 271

Query: 265 ELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVP--- 321
           +++    +  E V++PD    RS +  ++ QR  +  P        N P  +D + P   
Sbjct: 272 DIDFTEIEQAEEVFNPDLPAVRSEQTVEE-QRIGSGAPGGIPGALTNQPP-ADGQAPEQA 329

Query: 322 -----LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV-NKGRLTEVLGRS 375
                      +  + +   NYE++     T  +  +L RL++AVV+ +K  +    G  
Sbjct: 330 GQGGEGAGGQPSNTRSQAVRNYELDRTVSYTKREKGRLRRLTVAVVIDDKKTINPETGAV 389

Query: 376 ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
                    L     +V  A G ++ RGD++ I +  FL
Sbjct: 390 ERTQWTQQELERFAILVRDAVGYSAVRGDSVNILNEAFL 428


>gi|206603154|gb|EDZ39634.1| Flagellar M-ring protein FliF [Leptospirillum sp. Group II '5-way
           CG']
          Length = 531

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 130/454 (28%), Positives = 209/454 (46%), Gaps = 25/454 (5%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110
           L+  L   D   I   L+   + + +S  GS I VPS  V   R+ LA +GLP     +G
Sbjct: 52  LFSNLSPGDSMAIQGRLNRLGVPYHLSKKGSVIRVPSGQVYALRMELADEGLPRHH-GAG 110

Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170
           ++LF+   S   T F+Q +  + AL+ E+ RTI+ ++ I  ARV IV+P    F +   +
Sbjct: 111 FDLFNH-PSLATTDFVQRVQYLEALQTELDRTIEEMTPIALARVSIVLPRRTVFLREPDQ 169

Query: 171 PTASVMIRAINPSV---YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL 227
             ASV++R + P +   +     I HLVA AVP L    VTV+D+ G++L  N   R ++
Sbjct: 170 SHASVLVR-LKPGMTLEHPQVNGIVHLVANAVPGLSASRVTVVDTEGQIL--NRKRRGLV 226

Query: 228 GKSLSIVQ-AIQHEIEMNINKALAAF----LGVDNFRSAVVAELNMDTQQIREIVYDPDS 282
              L+  Q + Q E+E ++   L +     LG D     V AELN    +     +DP+ 
Sbjct: 227 PGELTEAQLSYQREVEQSVQHQLQSMLDKVLGPDQSVVRVSAELNFRQVEKSSRTWDPNG 286

Query: 283 KVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT-----DKKEEQSN 337
           +V +     ++        P     V  NMP  + +    P   +NT      KK++ ++
Sbjct: 287 RVLKDREQIREKSTGSRILPIGVPGVLSNMPGANGKVASPPMGPKNTAETRYSKKKQIAH 346

Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLT---EVLGRSADQGKIDSYLAEINKIVSA 394
           Y ++      T     L R+S++V+VN   +T   +   ++  Q +    + +  +IV  
Sbjct: 347 YHVSHTDQHVTEPVGNLRRISVSVLVNAVPVTIQSKTGPKTVMQPRDPKEIRDFTRIVQN 406

Query: 395 ATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTF 454
           A G +S RGD + + S+ F      +   +  SF + L+  F  ++   +FL G LLV F
Sbjct: 407 AIGFDSARGDQVVVLSVPFSGTSAPSPKNIDQSFQEKLA-PFVPLLE--IFLGGLLLVIF 463

Query: 455 LGLHALRRLHNIDDAKKGEVGGKSILSPPPISSA 488
             L  LR L       K EV        PP+  A
Sbjct: 464 -SLLVLRPLLKAMVQWKPEVSPMQPAEGPPLGKA 496


>gi|210134543|ref|YP_002300982.1| flagellar MS-ring protein [Helicobacter pylori P12]
 gi|210132511|gb|ACJ07502.1| flagellar basal-body M-ring protein [Helicobacter pylori P12]
          Length = 567

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 123/410 (30%), Positives = 207/410 (50%), Gaps = 30/410 (7%)

Query: 23  LILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           LI A V++  +++F+    F    +    Y  L+  L+ SD   I   L +  I +++S 
Sbjct: 25  LIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFEGLDSSDNALILQHLQQNQIPYKVSR 84

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           +  +I +P   V + RI LA+QG+P +S   G+E+FD    FG T F Q I  +RA+EGE
Sbjct: 85  D-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFD-TKDFGATDFDQNIKLIRAIEGE 141

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195
           ++RTI+S++ I+ A VHI +P    F      P+ASVM++ +NP +  S      I++L+
Sbjct: 142 LSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLK-LNPDMKLSPTQILGIKNLI 200

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAF 252
           AAAVP L + +V +++  G+ +   ++  N   +  + L   Q  ++ +E  I   LA  
Sbjct: 201 AAAVPKLTIDNVKIVNENGESIGEGDILENSKELALEQLHYKQNFENILENKIVNILAPI 260

Query: 253 LGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311
           +G  N   A V AE +   ++  +  +DP++ V     L +  + +   Q      V  N
Sbjct: 261 VGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSN 320

Query: 312 MPHV---SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGR 367
           +  V    D K P     E  +K +  +NYE+  K+I+     +  L RL+ AVVV+ G+
Sbjct: 321 IGPVQGLKDNKEP-----EKYEKSQNTTNYEVG-KTISEIKGEFGTLVRLNAAVVVD-GK 373

Query: 368 LTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
               L   A+  +     D  L +IN +V  A G N  RGD + +++ +F
Sbjct: 374 YKIALKDGANALEYEPLSDESLKKINALVKQAIGYNQNRGDDVAVSNFEF 423


>gi|331005205|ref|ZP_08328599.1| Flagellar M-ring protein fliF [gamma proteobacterium IMCC1989]
 gi|330420987|gb|EGG95259.1| Flagellar M-ring protein fliF [gamma proteobacterium IMCC1989]
          Length = 565

 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 116/410 (28%), Positives = 200/410 (48%), Gaps = 26/410 (6%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92
           + +  A   +     Y  LY  L   D + I   L +  I F++     ++ V +  +  
Sbjct: 46  VAIGFAVVLWTQEEDYRPLYSNLNQLDSSEIISILEQNAIQFKVDTKTGALLVSAQDIHT 105

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
           AR+ LA  GLP++ S  G+EL DK    G + FM+     R LEGE+ARTI S++ + AA
Sbjct: 106 ARLKLAEVGLPNTGS-VGFELLDKEQPLGSSQFMEATRYRRGLEGELARTITSLNAVRAA 164

Query: 153 RVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDV 207
           RVH+ +P    F +    P ASV +     RAI P   +   A+ +LVA+++  L + +V
Sbjct: 165 RVHLAIPKRSVFVRDAREPRASVFVELYPGRAITP---QQVVAMSNLVASSISELSLKNV 221

Query: 208 TVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE 265
           T++D  G LL+  E +  ++   + L   + ++ +I   I   L   +G D FR+ V A+
Sbjct: 222 TIVDQKGNLLSKGEEDPQLVQAAQELEYTREVEKKIISRIQALLDPIVGGDRFRAEVAAQ 281

Query: 266 LNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE--SAVTVEQNMPHVSDRKVPLP 323
           ++ +  +  E +++PD    RS + + D QR          A+T   N P  +     + 
Sbjct: 282 VDFNQVEQAEEMFNPDLPAIRSEQ-TVDEQRVGGGVGGIPGALT---NQPPANADAPEIA 337

Query: 324 RSLENTDKKEEQS-------NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL-GRS 375
              +N + ++  +       N+E++     T H   K+ RLS+AVVV+   +T+ L G  
Sbjct: 338 AGGDNNNAQQSSNSRSQSTRNFELDRTMSYTKHQVGKVRRLSVAVVVDDRLVTDPLTGEQ 397

Query: 376 ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425
             +   D+ +  ++ +V  A G +  RGD++ I +  FL N  FN+  +Q
Sbjct: 398 KYETWSDNEIERLSILVRDAVGFSPARGDSVNIINTPFL-NDGFNAEEIQ 446


>gi|255021373|ref|ZP_05293421.1| Flagellar M-ring protein fliF [Acidithiobacillus caldus ATCC 51756]
 gi|254969236|gb|EET26750.1| Flagellar M-ring protein fliF [Acidithiobacillus caldus ATCC 51756]
          Length = 568

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 132/439 (30%), Positives = 205/439 (46%), Gaps = 48/439 (10%)

Query: 18  GRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSDVNRISVALSEANIDFRI 76
           G  R  ILA  +L  I   +      + P  Y  LY  L   D   +   L + N+ FRI
Sbjct: 29  GNRRFAILA--VLAAIFAGIVVTLLWSRPQGYGVLYTNLSNRDGGEVIAQLQKLNVPFRI 86

Query: 77  SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136
           +D G+ ISVP++ V   R+ LAA GLP      G+E+ D     G + F++ +   RALE
Sbjct: 87  TDGGAVISVPANEVYATRMKLAAVGLPRGE-GVGFEILDH-EPMGTSDFVEHVNYQRALE 144

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE------- 189
           G + RTI S+S +  A+VH+ +P    F     +PTASV++     S+Y   E       
Sbjct: 145 GSLERTIASLSAVERAKVHLAIPKPSVFLSQEEKPTASVLV-----SLYPGRELSAAQVA 199

Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQAIQHEIEMNIN 246
            I HLVAA+VP L   +VTV+D  G LL+A     N LG     L+  +A+    E  I 
Sbjct: 200 GIVHLVAASVPGLTDKNVTVVDQQGNLLSAQG--GNDLGLQPGQLAYQRAVDRAYEHRIE 257

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV--ERSIRLSKDAQRSE------ 298
           + LA  +G    R AV A+++    +   + Y     +  ++++R S             
Sbjct: 258 QILAPIVGAGGVRVAVSADIDFSHSESSSVTYGNHQILSQQQNVRSSTGGGGPYGVPGAL 317

Query: 299 TSQPESAVTVEQNMPHVSDRK-------VPLPRSLENTDKKEEQS-NYEINTKSIATTHD 350
           ++QP          P VS           P  ++L  T+   + + N++++   + T + 
Sbjct: 318 SNQPPGVAIAPLTAPTVSTLSPGDLIALAPTLKALAPTESSSDSTTNFDVDQTIVHTVNP 377

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGK--IDSYLAEINKIVSAATGINSRRGDTITI 408
              ++RLS+AV+VN  RL       A Q K    + L +I ++V  A G +++RGDT+ +
Sbjct: 378 VGSVKRLSVAVLVND-RLEGTGLGGAKQAKPLTAAQLQQIQQLVEDAIGYDAKRGDTVKV 436

Query: 409 TSMDFLENQLFNSGTVQVS 427
            +M F       SGT  VS
Sbjct: 437 VNMPF-------SGTEAVS 448


>gi|254517007|ref|ZP_05129065.1| flagellar M-ring protein FliF [gamma proteobacterium NOR5-3]
 gi|219674512|gb|EED30880.1| flagellar M-ring protein FliF [gamma proteobacterium NOR5-3]
          Length = 566

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 121/437 (27%), Positives = 205/437 (46%), Gaps = 36/437 (8%)

Query: 20  TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN 79
           TR L L   +   I + M    +V  P+Y  LY  +   D N +  +L    +D+R+   
Sbjct: 22  TRQLALLIGLAASIAMAMGMVQWVVEPNYKPLYGTMAPEDTNDVIASLEANGVDYRMDRR 81

Query: 80  GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEI 139
              ++VP+  V +AR+ LA  G P      G+E   +    GL+SFM++    RALE E+
Sbjct: 82  SGMVAVPAGDVHRARLLLAGDGYPRGE-GVGFESLYREQEIGLSSFMEQARFHRALESEL 140

Query: 140 ARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHL 194
           ARTI ++  +  ARVH+ M    +F +   +P ASVM+     R +N    +    I HL
Sbjct: 141 ARTIGALESVRGARVHLAMAKQSAFLRQREQPAASVMLNLYAGRTLN---ERQLSGIVHL 197

Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEMNINKALAAF 252
           VA++VPNLD   V+V+D  GKLL+    + E           + ++ E+   I   L   
Sbjct: 198 VASSVPNLDSEQVSVVDQQGKLLSGQGTDEEFGFTQDQFRYSRQLESELSGRIVDILEPI 257

Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKV-------ERSIRL-SKDAQRSETSQP-- 302
           LG +  R+ V A+L+    +     Y P+++V       E S RL +     + +++P  
Sbjct: 258 LGANAVRAQVAADLDFTRVERTLETYAPETRVRSEQTSEETSNRLYAGGVPGTLSNEPPI 317

Query: 303 ESAVTVEQNMPHVSDR--------KVPLPRSLENTDKKEEQSNYEINTKSIATTHDN-YK 353
           ++ V   Q  P+V            +P  R+      +    NYE++ K+I+   +    
Sbjct: 318 DTTVATVQAAPNVDANIDANAQAGAIPPART-----SRRSTINYEMD-KTISHVRETPGA 371

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           L++LSIAVV++    T   G ++        + E+  +V  A G ++ RGDT+++ S  F
Sbjct: 372 LQKLSIAVVLDYIETTADDGTTSRVPMPQERIDEVTSLVREAVGFDADRGDTVSVISASF 431

Query: 414 LENQLFNSGTVQVSFMD 430
           +E        ++ S ++
Sbjct: 432 VEVPAIEDSVIESSLLE 448


>gi|332526951|ref|ZP_08403040.1| flagellar M-ring protein FliF [Rubrivivax benzoatilyticus JA2]
 gi|332111390|gb|EGJ11373.1| flagellar M-ring protein FliF [Rubrivivax benzoatilyticus JA2]
          Length = 554

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 108/387 (27%), Positives = 182/387 (47%), Gaps = 28/387 (7%)

Query: 48  YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           Y  L+  +   D   I   L++ N+ +R S+ G +I VP+S V   R+ L+A GLP  S 
Sbjct: 57  YRVLFANVGEKDGGAIVEKLAQMNVPYRFSEGGGTIMVPASQVYDLRLKLSAAGLPKGSI 116

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
            +GYEL DK  +FG T   + I   RALEGE+ RTIQ++S +  ARVH+ +P+   F + 
Sbjct: 117 -TGYELLDK-TAFGQTQGQERINLQRALEGELTRTIQTLSSVETARVHLALPNQNGFFRE 174

Query: 168 GARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MER 224
             +P+ASV++          A+   I HLV+++VP L    V+VLD  G LL++ +   +
Sbjct: 175 QQKPSASVVLTLRPGHTLDRAQLAGIVHLVSSSVPELSAKAVSVLDGDGSLLSSQDNASQ 234

Query: 225 NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM-DTQQIREIVYDPDSK 283
            +  + L  V+ ++      +N  L   LG DN R+ V AE++   T+Q  E        
Sbjct: 235 GLDTQQLQYVREVEATYLRRVNDLLEPVLGRDNLRATVTAEVDFSQTEQTSEEFKPNQGD 294

Query: 284 VERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE---------------- 327
              ++R S+    SE+++P     V   +P     + P+P S                  
Sbjct: 295 NPAAVRASR---VSESTRP--GANVPSGVPGAVSNQPPVPASAPINGPAQALQAANGGAA 349

Query: 328 -NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLA 386
               +++ ++ YE++            + R++ AVVVN     +  G+          L 
Sbjct: 350 GGNAQRDAETRYEVDKTVRVIRGATGTVRRINAAVVVNHRNGVDAKGKPTSTPLSQEELD 409

Query: 387 EINKIVSAATGINSRRGDTITITSMDF 413
           ++  +V    G +  RGD++ + +  F
Sbjct: 410 KLTALVEQGIGFSKERGDSVRVVNAPF 436


>gi|225849149|ref|YP_002729313.1| flagellar M-ring protein FliF [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225643430|gb|ACN98480.1| flagellar M-ring protein FliF [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 534

 Score =  141 bits (355), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 115/412 (27%), Positives = 215/412 (52%), Gaps = 31/412 (7%)

Query: 25  LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSIS 84
           L  + LV I+  +  + F +   Y  LY  L   D   +  ALS+ NI +++  NG+ I 
Sbjct: 29  LIGLFLVVILSIVLLKSF-HKEDYAVLYSGLSPDDAGNVLTALSQENIPYKLEGNGTIIM 87

Query: 85  VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144
           VP   V  AR+ LAA+GLPS     G+E+F++    G T F + +  +RA+EGE+ RTI+
Sbjct: 88  VPKDKVYDARLKLAAKGLPSGKV-VGFEIFEE-PKLGTTQFQENVNYIRAVEGELTRTIK 145

Query: 145 SISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS---VYKSAEAIRHLVAAAVPN 201
            +  ++ A+V+I MP    F +      ASV+I+ + P      +  +AI  LV+ AVP 
Sbjct: 146 QLDAVMDAKVNISMPKDSLFVREDEEAKASVIIK-LWPDKDLTKEQIKAIVFLVSHAVPK 204

Query: 202 LDMGDVTVLDSTGKLLTANEMERNIL----GKSLSIVQAIQHEIEMNINKALAAFLGVDN 257
           L   +VTV+D+ G++L+ + ++ N+      K++ + + ++ ++E +I   LA  +G + 
Sbjct: 205 LKPENVTVVDNRGRVLS-DLIDENVSEASGDKTVELKRKLEKQLEKDIQSMLAKVVGPE- 262

Query: 258 FRSAVVAELNMDTQQI--REIVYDPDSKV---ERSIRLSKDAQRSETSQPESAVTVEQNM 312
            R  V A + ++T ++  ++ +YDPD      ER I+ S+  + +  + P    T   N+
Sbjct: 263 -RVVVKASVELETGKVNQKDEIYDPDKVAVVSERKIKESETEEANTINAPPGTPT---NV 318

Query: 313 PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372
           P V +  +      +  +K +  +NY+++   I T    + ++++S+ V+++ G+  EV 
Sbjct: 319 PPVMNTPI-FGGGGKKKEKSDITTNYDVSKSMIETQKPLFVIKKVSVGVMID-GKYKEVK 376

Query: 373 GRSAD-----QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF--LENQ 417
            +  +     + +    L     ++ +A G +  RGD +T+ S+ F  LE Q
Sbjct: 377 DKDGNVKLEFEPRSPQELQSYENLIKSAIGFDPNRGDQVTVISVPFESLETQ 428


>gi|320107022|ref|YP_004182612.1| flagellar M-ring protein FliF [Terriglobus saanensis SP1PR4]
 gi|319925543|gb|ADV82618.1| flagellar M-ring protein FliF [Terriglobus saanensis SP1PR4]
          Length = 559

 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 115/437 (26%), Positives = 201/437 (45%), Gaps = 36/437 (8%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           ++     +  L+  LE  D+ ++   L  A I ++ + +GS I V +  + KAR+ +AA+
Sbjct: 57  WWTGRTDWRPLFKGLEGRDLQQVEQQLGSAGIAYQPTPDGSGIEVAAEQMDKARMVVAAK 116

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           G+P S    G+ELFDK N  G + F +++   RALEGE+  TI+++  + +ARVH+ +  
Sbjct: 117 GMPGSG-RMGFELFDKPNWVG-SEFDEKVNYQRALEGELEHTIETLGAVRSARVHLTLSR 174

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
              F       TASV+++  N S+ +  A +IR LVA AV NL    V ++D+ G     
Sbjct: 175 QSLFAAEEHPATASVVLKMRNASLARDQAASIRALVAGAVENLHPEQVALVDADGHFDLN 234

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
              +R         VQ  +  +E  +   L    G  N R+ V    + + ++  + VYD
Sbjct: 235 GPTQRG-------EVQEQEQALERKLVAMLEPLAGTGNVRATVNLSFDSEAEERTDEVYD 287

Query: 280 PDSKVERSIRLSKDAQRSETSQPESAVT-VEQNMPHVSDRKVPLPRSLENTDK------- 331
           P      S++ S+  Q S  +  + AV     NMP  +    PL  + E  D        
Sbjct: 288 PQQSAPVSMQRSE--QSSTQANRQGAVAGAAANMPGPAPAVPPLLATPEKKDANGLPVYP 345

Query: 332 ---------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSAD---QG 379
                    +EE S+Y +    + T     +++R+  AVVVN   +TE  G+      + 
Sbjct: 346 QAGGPSQAVREESSSYAVTRHLVHTQRGPGRVQRIVAAVVVNDRAVTEKAGKDGATLWKQ 405

Query: 380 KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATV 439
           +    +  + ++  AA G + +R D + I ++ F E    N+   + ++ +  + H +  
Sbjct: 406 RTPEEMRRLEQLAQAAVGFDPKRADQVVIENIAFSE----NAADARPNWFERQAEHGSNF 461

Query: 440 INALVFLVGTLLVTFLG 456
           +     L+ TL V   G
Sbjct: 462 LRMQPVLIRTLGVVVCG 478


>gi|170722857|ref|YP_001750545.1| flagellar MS-ring protein [Pseudomonas putida W619]
 gi|169760860|gb|ACA74176.1| flagellar M-ring protein FliF [Pseudomonas putida W619]
          Length = 592

 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 138/563 (24%), Positives = 248/563 (44%), Gaps = 71/563 (12%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92
           + +  A   +   P Y  LY  L   D  ++   L+ A+I + +  N  ++ V +  + +
Sbjct: 50  VAIGFAVVLWSQQPDYRPLYGSLAGMDTKQVMDTLAAADIPYNVEPNSGALLVKADDLSR 109

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
           AR+ LAA G+  S  N G+EL DK    G + FM+     R+LEGE+ART+ S++ + AA
Sbjct: 110 ARLKLAAAGVAPSDGNVGFELLDKEQGLGTSQFMEATRYRRSLEGELARTVSSLNNVKAA 169

Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVL 210
           RVH+ +P    F +   +P+ASV++        ++ +  AI +LVA +VP LD   VTV+
Sbjct: 170 RVHLAIPKSSVFVRDERKPSASVLVELYPGRSLEAGQVMAIVNLVATSVPELDKSQVTVV 229

Query: 211 DSTGKLLTANEMERNIL---GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELN 267
           D  G LL+ ++++   L   GK     + ++  +   ++  L   LG D +++ V A+L+
Sbjct: 230 DQKGNLLS-DQLQDTALTMAGKQFDYSRRMEGMLTQRVHNILQPVLGNDRYKAEVSADLD 288

Query: 268 MDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP-------------- 313
               +     ++PD    RS + S + QR+ +S P+       N P              
Sbjct: 289 FSAVESTSEQFNPDQPALRSEQ-SVNEQRASSSGPQGVPGALSNQPPAGAAAPENATAAA 347

Query: 314 ------------------HVSDRKVPLPRSLENTDKKEEQS--NYEINTKSIATTHDNYK 353
                              + D     P        K  Q+  N+E++     T     +
Sbjct: 348 PAAGAIQPGQPLVDANGQQIMDPATGQPMLAPYPADKRLQTTKNFELDRSISHTRQQQGR 407

Query: 354 LERLSIAVVVNKGRLTEVLGRS--ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
           L RLS+AVVV+     +  G +  A  G  D  LA   ++V  A G ++ RGD++T+ ++
Sbjct: 408 LTRLSVAVVVDDQVKVDAAGETTRAPWGAED--LARFTRLVQDAVGFDASRGDSVTVINV 465

Query: 412 DFLENQLFNSGTV----QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
            F  ++      +    Q  F DI+ +    V+  LV + G L      +    +     
Sbjct: 466 PFAADRGEEIADIAFYQQPWFWDIV-KQVLGVVFILVLVFGVLRPVLNNITGGGKQAAAT 524

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF-SHSRNLQSRINSYVSKQ 526
           D+   E+GG   L           G + ND ++L      +  S S   ++++N+     
Sbjct: 525 DSDM-ELGGMIGLD----------GELANDRVSLGGPTSILLPSPSEGYEAQLNA----- 568

Query: 527 SDLRLLHMIEINEERFAKILRKW 549
               +  ++  +  R A+++++W
Sbjct: 569 ----IKGLVAEDPGRVAQVVKEW 587


>gi|330961220|gb|EGH61480.1| flagellar MS-ring protein [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 596

 Score =  140 bits (354), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 151/610 (24%), Positives = 258/610 (42%), Gaps = 110/610 (18%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L
Sbjct: 24  LSFLENLSEMTMLRQVGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGLDSKQIMDTL 83

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + ANI + +  N  ++ V S  V +ARI LA  G+  + +N G+E+ DK    G + FM+
Sbjct: 84  TAANIVYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINP 182
                R LEGE+ARTI +++ +  ARVH+ +P    F +   +P+ASV++     R++ P
Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHE 240
           S      AI +LVA +VP L    +TV+D  G LL+  A   E  + GK     + ++  
Sbjct: 204 S---QVLAIINLVATSVPELSKSQITVVDQKGTLLSDQAENSELTMAGKQFDYSRRMEGM 260

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE-- 298
           +   +   L   LG D +++ V A ++    +     ++PD    RS + S + QRS   
Sbjct: 261 LTQRVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQ-SVNEQRSSSS 319

Query: 299 ---------TSQPESAVTVEQ----------------------NMPHVSDRKVPLPRSLE 327
                    ++QP    T  Q                      N   + D     P    
Sbjct: 320 SSGGVPGALSNQPPGPATAPQTAGGGAAGAAGPIAAGQPLLDANGQQIMDPATGQPALAP 379

Query: 328 NTDKKEEQS--NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID--- 382
               K  QS  N+E++     T     +L RLS+AVVV+     +++  +A  G+I    
Sbjct: 380 FPADKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVD-----DMVKTNAANGEISRAP 434

Query: 383 ---SYLAEINKIVSAATGINSRRGDTITITSMDF-------LENQLFNSGTVQVSFMDIL 432
              + LA   ++V  A G ++ RGD++++ ++ F       L    F S   Q  F DI+
Sbjct: 435 WSATDLARFTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYS---QPWFWDIV 491

Query: 433 SRHFATVINALVFLVGTLLVTFLGLHALRR-LHNIDDAKK-----------GEVGGKSIL 480
            +            VG + +  L    LR  L+NI + K             E+GG   L
Sbjct: 492 KQA-----------VGVIFILILVFGVLRPVLNNITNGKSKQQLAAFGGGDAELGGMGGL 540

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
                      G + ND ++L      +  S +    +++N+  S         ++  + 
Sbjct: 541 D----------GELSNDRVSLGGPQSILLPSPTEGYDAQLNAIKS---------LVAEDP 581

Query: 540 ERFAKILRKW 549
            R A+++++W
Sbjct: 582 GRVAQVVKEW 591


>gi|94968680|ref|YP_590728.1| flagellar M-ring protein FliF [Candidatus Koribacter versatilis
           Ellin345]
 gi|94550730|gb|ABF40654.1| flagellar M-ring protein FliF [Candidatus Koribacter versatilis
           Ellin345]
          Length = 529

 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 118/422 (27%), Positives = 206/422 (48%), Gaps = 33/422 (7%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           Q+  F +S T    T+ L LA   L    L       +  P    LY  L+  D   +  
Sbjct: 13  QIANFLRSLTG---TQKLWLAFAGLTVTTLLYVFVTMLAKPEMKPLYSGLQAQDAQALGS 69

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L+   I+++IS +G+S+SV    +  AR+ +A+ G P S    G+ELFDK N +G + F
Sbjct: 70  KLAAQKIEYQISPDGTSVSVAVDKLDSARLLVASDGGPKSG-RMGFELFDKPN-WGSSDF 127

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINP 182
            +++   RALEGE+ RT+ +I G+ A RVH+V+P    F        ASV+++   A++P
Sbjct: 128 SEKVNYQRALEGELERTLSTIDGVEAVRVHLVLPRESLFADKREEAKASVILKLRGAMSP 187

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI-LGKSLSIVQAIQHEI 241
           +   S  AIR  +A AV  L    VTV+D+          E N+ +GK+ S    ++ E 
Sbjct: 188 N---SDVAIRRFLAGAVEGLRPEGVTVIDA----------ENNLPIGKTSSDGSGVESER 234

Query: 242 EMNINK----ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           +  + K     L   +GV   R++V  E ++ +    +  YDP+S    +++ S++    
Sbjct: 235 DQALAKELVRTLEPIVGVGGARASVHVEYDVTSGDETQETYDPNSTAALTMQKSEETVGG 294

Query: 298 ETSQ--PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
             +Q  P +A     N+P+          S ++   K E   Y +N     T     +++
Sbjct: 295 TLAQGVPGTA----SNIPNTQSPSKST-NSADSQSSKSESGTYAVNRVVRHTLLPAGRIK 349

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           R++ A++V+   +T+ +G ++   +    L +I+ +  A+ GIN  RGD + + ++ F E
Sbjct: 350 RITAALLVDDADVTDAMGNTSRAKRSPEELKKIDSLARASLGINDARGDVLAVENLSFHE 409

Query: 416 NQ 417
           N+
Sbjct: 410 NK 411


>gi|317180754|dbj|BAJ58540.1| flagellar MS-ring protein [Helicobacter pylori F32]
          Length = 567

 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 123/410 (30%), Positives = 206/410 (50%), Gaps = 30/410 (7%)

Query: 23  LILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           LI A V++  +++F+    F    +    Y  L+ +L+ SD   I   L +  I ++I  
Sbjct: 25  LIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFERLDSSDNALILQHLQQNQIPYKILK 84

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           +  +I +P   V + RI LA+QG+P +S   G+E+FD    FG T F Q I  +RA+EGE
Sbjct: 85  D-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFD-TKDFGATDFDQNIKLIRAIEGE 141

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195
           ++RTI+S++ I+ A VHI +P    F      P+ASVM++ I P +  S      I++L+
Sbjct: 142 LSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLK-IKPDMKLSPTQILGIKNLI 200

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAF 252
           AAAVP L + +V +++  G+ +   ++  N   +  + L   Q  ++ +E  I   LA  
Sbjct: 201 AAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLHYKQNFENILENKIVNILAPI 260

Query: 253 LGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311
           +G  N   A V AE +   ++  +  +DP++ V     L +  + +   Q      V  N
Sbjct: 261 VGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSN 320

Query: 312 MPHV---SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGR 367
           +  V    D K P     E  +K +  +NYE+  K+I+     +  L RL+ AVVV+ G+
Sbjct: 321 IGPVQGLKDNKEP-----EKYEKSQNTTNYEVG-KTISEIKGEFGTLVRLNAAVVVD-GK 373

Query: 368 LTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
               L   A+  +     D  L +IN +V  A G N  RGD + +++ +F
Sbjct: 374 YKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDDVAVSNFEF 423


>gi|167644977|ref|YP_001682640.1| flagellar MS-ring protein [Caulobacter sp. K31]
 gi|167347407|gb|ABZ70142.1| flagellar M-ring protein FliF [Caulobacter sp. K31]
          Length = 547

 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 114/361 (31%), Positives = 184/361 (50%), Gaps = 27/361 (7%)

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
           AL  A I +    +GS+I V    V  AR  +  +GL +S S  GYE+FD  ++ G T F
Sbjct: 60  ALDTAGIKYETKSDGSTIYVARDKVNAARQLIFTKGLVTSGS-VGYEIFDTGSALGQTDF 118

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV---MIRAINP 182
           +Q++ R RAL+GE+ RTIQ   G+ AARVH+VMP    F +   +PTA+V   M R  +P
Sbjct: 119 VQQLNRQRALQGELERTIQGWDGVRAARVHLVMPKRQLFEEDAEQPTAAVTVSMAREPSP 178

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK-SLSIVQAIQHEI 241
            + +   A+++LVA +V  +    V V+D  GK L+A   E ++ GK +     A +  I
Sbjct: 179 DMVR---AVQNLVAGSVAGMKPDRVNVIDQHGKTLSAGNDE-SLAGKMAQDAKSATEARI 234

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
              +   +   LG    R  V A+L+++    +E  +DPD +V RS   +  A  SET  
Sbjct: 235 AKTVKDMIDGVLGPGKARVNVTADLDLNRVTTQERKFDPDGQVIRS-ESTNAANNSETKN 293

Query: 302 PES-AVTVEQNMPHVSDRKV-PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
            ++  VT  QN+P  +     PL      +D  E  +NYEI+  +  T  +   + ++++
Sbjct: 294 DDTGGVTSTQNIPGQTPNGFQPL---GSKSDSNESVTNYEISESTKTTVQEPGAVRKVAV 350

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSY-------LAEINKIVSAATGINSRRGDTITITSMD 412
           AV ++      V       GK  +Y       +A+I ++V  A G +  RGD +++ ++ 
Sbjct: 351 AVAIDG-----VAAPPGKDGKPGAYTPRSAEEIAQIEQLVKTAVGFDQTRGDQVSVVNVR 405

Query: 413 F 413
           F
Sbjct: 406 F 406


>gi|289208337|ref|YP_003460403.1| flagellar M-ring protein FliF [Thioalkalivibrio sp. K90mix]
 gi|288943968|gb|ADC71667.1| flagellar M-ring protein FliF [Thioalkalivibrio sp. K90mix]
          Length = 552

 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 120/418 (28%), Positives = 199/418 (47%), Gaps = 42/418 (10%)

Query: 21  RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80
           R L L  ++   I++ +A  ++   P Y  L+ ++E  +   +  ALS+A I +++    
Sbjct: 26  RQLALLGMLAGAIVVIVAVLYWAFRPTYVPLFPRMESEEAAEVVQALSQAGISYQVDATT 85

Query: 81  SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV-RALEGEI 139
             + VP   V +AR+ LA++GLP  S + G+EL  +    G TS M E  R  RA+EGE+
Sbjct: 86  GQVKVPQGDVAEARLQLASEGLP-RSGDVGFELLQEDTGLG-TSRMVEGARFHRAMEGEL 143

Query: 140 ARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHL 194
           ART+ S+  +  ARVHI   +   F +     +ASV++     R+++ S      AI HL
Sbjct: 144 ARTVASLDAVERARVHIAQAEQSVFVRDRRPASASVVVHLRGSRSLSDS---QVAAIVHL 200

Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS--LSIVQAIQHEIEMNINKALAAF 252
           VA++   L+   VTV+D  G+LLT +  +R  +  S  LS  + ++      I+  LA  
Sbjct: 201 VASSTSELEAERVTVVDQRGRLLTQDGADRGGMASSDRLSFSREVEQRYAERIHDLLAPI 260

Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE-----------TSQ 301
           +G D  R  V A+++    +  E +YDP++   RS +  +D +              T+Q
Sbjct: 261 VGSDKVRVQVNADIDFSQVERTEELYDPETIALRSEQTREDERTGMDGGPAGVPGALTNQ 320

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
           P     VE     ++   +P  RS   T       NYE++ +          + R+S AV
Sbjct: 321 PPEGGAVEDPEGEMAPAPLPTSRSANVT------RNYEVDRRINHIREAPGGIRRVSTAV 374

Query: 362 VVN------KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           VV+      +   TE + R A++      L  I  +V  A G +  RGDT+ + +  F
Sbjct: 375 VVDFREQVGEDGATESVARDAEE------LERIEALVREAVGFSEARGDTLNVVTAPF 426


>gi|221640811|ref|YP_002527073.1| flagellar MS-ring protein [Rhodobacter sphaeroides KD131]
 gi|221161592|gb|ACM02572.1| Flagellar M-ring protein FliF [Rhodobacter sphaeroides KD131]
          Length = 542

 Score =  140 bits (353), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 125/450 (27%), Positives = 219/450 (48%), Gaps = 27/450 (6%)

Query: 18  GRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS 77
           GR R +++ + + +  +  +        P    LY  L+      +  AL      + + 
Sbjct: 27  GRRRAVVVGATVAM-FLAVLGLSQLAGRPPMALLYAGLQGPAAGEVVTALEAQGAAYEV- 84

Query: 78  DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137
             G S+ V ++   + R+ LA +GLP++ + +GYEL D ++ FG TS M +   +RA EG
Sbjct: 85  -RGDSVYVEAARRDEIRMKLAGEGLPATGA-AGYELLDGLSGFGTTSQMFDAAYLRAKEG 142

Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVA 196
           E+ARTI +   + AARVHI  P    FR+   RPTASV +     +V    A A +HLVA
Sbjct: 143 ELARTILASPQVKAARVHIAQPAAQPFRRE-QRPTASVTVTTSGGAVTADQARAFKHLVA 201

Query: 197 AAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVD 256
           +AV  L   DV+V+DS   L+ + + E++    + +  ++   E+  N+ + L A +G  
Sbjct: 202 SAVAGLQPEDVSVIDSVMGLIRSGD-EKD---SATAAGESRAAELRSNVERLLEARVGPG 257

Query: 257 NFRSAVVAELNMDTQQIREIV----YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNM 312
                 V E+++D +  RE +    +DP  +V   I      + S +++P   VTV  N+
Sbjct: 258 R----AVVEVSVDVETARESIVEKSFDPKGRV--PISSETQEKSSNSTEPSPDVTVASNL 311

Query: 313 PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372
           P    +     +S   T +  E  N+E++            + RL++AV+V+  +     
Sbjct: 312 PEGDAKGGTGGKS--TTSETRETVNFEVSQTQRELMRQPGAIRRLTVAVLVDGIKTVADD 369

Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDIL 432
           G    + + +  LA + ++V +A G++  RGD +T+ S+ F       +GT  ++    L
Sbjct: 370 GTVGWEPRPEEELAVLRELVGSAVGLDESRGDRLTLRSLAF--ETPPEAGT--LAETGFL 425

Query: 433 SRHFATVINALVFL-VGTLLVTFLGLHALR 461
           SR  A  + +L+ + V  L+   LGL  +R
Sbjct: 426 SRLGAFDLMSLIQIGVLALVALILGLFVVR 455


>gi|302037604|ref|YP_003797926.1| flagellar M-ring protein FliF [Candidatus Nitrospira defluvii]
 gi|300605668|emb|CBK42001.1| Flagellar M-ring protein FliF [Candidatus Nitrospira defluvii]
          Length = 518

 Score =  140 bits (353), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 109/392 (27%), Positives = 184/392 (46%), Gaps = 14/392 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92
           I   +A   +   P    L+  L V D + I   L +A + +  ++ G+++ VPS+ V  
Sbjct: 24  IAGLVAVTLWTQQPDMQVLFANLAVDDASGIIDKLKDAKVPYETANGGTTVLVPSAQVHD 83

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
            R+ LA QGLP      GYE+FD+  + G++ F+Q++   RAL+GE+ARTI  +  +  A
Sbjct: 84  LRLELAGQGLPHGG-GVGYEIFDR-TTMGMSDFVQKLNYRRALQGELARTITQMPEVERA 141

Query: 153 RVHIVMPDMGSFRKIGARPTASVMI--RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
           RVH+ +P+   F     R  ASV++  RA         + + HLV+++V  L   DVTV+
Sbjct: 142 RVHLAIPERRLFATEQDRARASVVVSLRASQTLSKAQIQGVVHLVSSSVEGLQSRDVTVV 201

Query: 211 DSTGKLL--TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM 268
           D  G LL  T+++    + G  +   + ++ +IE  I   L   +GV+     V + L+ 
Sbjct: 202 DGHGNLLSNTSSDESAGLSGTQMEYQRTLEKDIETRIQTMLERIVGVNKAVVRVSSVLDF 261

Query: 269 DTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
              +  E  YDP+ +V RS +  ++              VE N+P  ++ +     S  N
Sbjct: 262 RKIETTEERYDPNGQVVRSEQRGQEKSSGVNGTSGGVPGVESNVPGGTEAEGGQTSS-NN 320

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY---- 384
              K E  NYEI+            +++LS+AV+V+           A   +   Y    
Sbjct: 321 NQTKNETVNYEISRTVSRIVEPTGTIKKLSVAVLVDGTYEGGGKAGEAGADQPKKYVPRS 380

Query: 385 ---LAEINKIVSAATGINSRRGDTITITSMDF 413
              +  I +IV  A G ++ R D + + S+ F
Sbjct: 381 EEEMKRIEEIVKKAMGYSTERQDQVEVVSIQF 412


>gi|117928049|ref|YP_872600.1| flagellar M-ring protein FliF [Acidothermus cellulolyticus 11B]
 gi|117648512|gb|ABK52614.1| flagellar M-ring protein FliF [Acidothermus cellulolyticus 11B]
          Length = 533

 Score =  140 bits (353), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 129/432 (29%), Positives = 206/432 (47%), Gaps = 46/432 (10%)

Query: 2   AILDQLLQFFKSGTSLGR--TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           AILD++   F   T+  +  T +++LA VI    +LF   R +   P Y  L+  L  SD
Sbjct: 5   AILDRIRAVFGEFTAGQKMVTALIVLALVIGA--VLF---RSWAAKPSYAPLFSNLAASD 59

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I+  L+     +R++D GS+I VP   V + R+ +A   LP+SS  SG+ L DK   
Sbjct: 60  AAAITDKLNSLKEPYRLADGGSTILVPQKDVYQLRLDMAKANLPASS-QSGFSLLDK-GG 117

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
              + F Q +   +ALE E+A+TI++I+G+ +A V+IV+P    F +  ++PTASV++  
Sbjct: 118 ITTSEFQQNVAYQQALESELAKTIEAINGVQSAIVNIVLPQTDVFTQDSSKPTASVLV-T 176

Query: 180 INPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ- 235
             PS   + E   AI HLVA++V  L+  DVTV DS G +L+A  M+  +   S    Q 
Sbjct: 177 TQPSSTLTPEQVQAIVHLVASSVEGLNPADVTVADSQGHVLSAPGMDGQLSAASTLQDQQ 236

Query: 236 --AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293
             A +  +   +   L   +G  +    V A LN DT+      Y   S     I LS+ 
Sbjct: 237 TAAYEQRVAQAVQNLLQPLVGPGHVVVQVNAALNFDTKSTTSETYLQPSPGTTPIPLSQS 296

Query: 294 AQ---RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
                 S T+Q  + +    N+       VP P     T     QS       +I    +
Sbjct: 297 WSYETYSGTNQAATGILGPDNI------AVPTPSPSPGT----YQSQSATVDNAIGRVVE 346

Query: 351 NYK-----LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
             K     +ERLS+AV+++      V             L ++  +V++A G+ + RGD+
Sbjct: 347 EVKTAPGSVERLSVAVLLDSAAAKNV------------NLTDVKNLVTSAAGVQTSRGDS 394

Query: 406 ITITSMDFLENQ 417
           +++ +M F  +Q
Sbjct: 395 VSVATMPFDTSQ 406


>gi|254779042|ref|YP_003057147.1| flagellar MS-ring protein [Helicobacter pylori B38]
 gi|254000953|emb|CAX28897.1| Flagellar M-ring protein [Helicobacter pylori B38]
          Length = 567

 Score =  140 bits (353), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 122/410 (29%), Positives = 206/410 (50%), Gaps = 30/410 (7%)

Query: 23  LILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           LI A V++  +++F+    F    +    Y  L+  L+ SD   I   L +  I +++S 
Sbjct: 25  LIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEGLDSSDNALILQHLQQNQIPYKVSK 84

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           +  +I +P   V + RI LA+QG+P +S   G+E+FD    FG T F Q I  +RA+EGE
Sbjct: 85  D-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFD-TKDFGATDFDQNIKLIRAIEGE 141

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195
           ++RTI+S++ I+ A VHI +P    F      P+ASVM++ + P +  S      I++L+
Sbjct: 142 LSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLK-LKPDMKLSPTQILGIKNLI 200

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAF 252
           AAAVP L + +V +++  G+ +   ++  N   +  + L   Q  ++ +E  I   LA  
Sbjct: 201 AAAVPKLTIDNVKIVNENGESIGEGDILENSKELALEQLHYKQNFENILENKIVNILAPI 260

Query: 253 LGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311
           +G  N   A V AE +   ++  +  +DP++ V     L +  + +   Q      V  N
Sbjct: 261 VGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSN 320

Query: 312 MPHV---SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGR 367
           +  V    D K P     E  +K +  +NYE+  K+I+     +  L RL+ AVVV+ G+
Sbjct: 321 IGPVQGLKDNKEP-----EKYEKSQNTTNYEVG-KTISEIKGEFGTLVRLNAAVVVD-GK 373

Query: 368 LTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
               L   A+  +     D  L +IN +V  A G N  RGD + +++ +F
Sbjct: 374 YKIALKDGANTLEYEPLSDESLQKINALVKQAIGYNQNRGDDVAVSNFEF 423


>gi|300717231|ref|YP_003742034.1| flagellar basal-body M-ring protein [Erwinia billingiae Eb661]
 gi|299063067|emb|CAX60187.1| Flagellar basal-body M-ring protein [Erwinia billingiae Eb661]
          Length = 576

 Score =  140 bits (352), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 108/413 (26%), Positives = 191/413 (46%), Gaps = 49/413 (11%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  LY  L   D   I   L++ NI ++  D G ++ VP+  V + R+ LA Q
Sbjct: 46  LWAKQPEYRVLYNNLSDEDGGAIITQLTQMNIPYQFDDKGGALMVPAEKVHELRLRLAQQ 105

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  +   RVH+ MP 
Sbjct: 106 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKNVRVHLAMPK 163

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    PTASV +     RA++        AI H+V+++V  L  G+VTV+D  G 
Sbjct: 164 PSLFVREQKSPTASVTLTLQPGRALD---QGQISAIVHMVSSSVAGLPPGNVTVVDQAGH 220

Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT ++   R++    L     +++  +  I   L   +G  N  + V A+++ + ++  
Sbjct: 221 LLTQSDNAGRDLNDAQLKYATDVENRFQSRIEAILNPIVGTGNVHAQVTAQIDFNAREQT 280

Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQPESAVTVEQNMPHVSDR-- 318
           +  Y P+S        S+    SE              ++QP  A T     P  +++  
Sbjct: 281 DEKYQPNSDPSTQAVRSRQTSDSEQIGGQYPGGVPGALSNQPAPANTAPVTTPAANNQNG 340

Query: 319 ------------------KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
                                  ++  +  + +  +NYE++   + T  +  +++RLS+A
Sbjct: 341 QNGQNGQNGNAAAANQGSSASTAKAGPSNTRTDNTTNYEVDRTILHTKMNVGEVQRLSVA 400

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           VVVN     +  G+       D+ L +I  +   A G + +RGD++ + +  F
Sbjct: 401 VVVNYK--ADAAGKPI--ALTDAQLKQIENLTREAMGYSDKRGDSLNVVNSPF 449


>gi|182412248|ref|YP_001817314.1| flagellar M-ring protein FliF [Opitutus terrae PB90-1]
 gi|177839462|gb|ACB73714.1| flagellar M-ring protein FliF [Opitutus terrae PB90-1]
          Length = 530

 Score =  140 bits (352), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 107/331 (32%), Positives = 165/331 (49%), Gaps = 11/331 (3%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  LY +L   D   I   L   NI   ++  G+++ VPS  V K R+ LA++
Sbjct: 39  LWSRRPDYQLLYARLSEKDAASIIGQLQTQNIPHIVTAGGTAVQVPSDQVYKLRMDLASK 98

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLPS     G+E+FDK   FGL+ F+Q    +RA++GE+ARTI  + G+ AARV IV P+
Sbjct: 99  GLPSGD-GVGFEIFDK-GQFGLSDFVQRTNYLRAVQGELARTIMQLQGVRAARVMIVQPE 156

Query: 161 MG-SFRKIGARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
                     + TASV +      +      AIRHLVA AV  L    V V+D+ G +L+
Sbjct: 157 NRLLLTDQSVKSTASVFVDVGGKRLETDQVNAIRHLVANAVQGLAPDQVAVVDNRGHVLS 216

Query: 219 ANEMERNILGKSLSIV---QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
               +   LG + S +   Q ++      +   LAA +G  N    V AE++ +   I E
Sbjct: 217 EELKQDPTLGTASSQIRYRQQVEDYFAKKVETMLAAVIGPGNAVVRVSAEIDTEAVAITE 276

Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVT-VEQNMPHVSDRKVPLPRSLENTD--KK 332
             +DP+ +V R+  +++D   S  S+    V  V  N+P   +      R + NT+  +K
Sbjct: 277 ERFDPEGQVVRTQTVTEDTSSSAESRSAGGVVGVSANVPE-KNPGTEAARPVSNTEQSRK 335

Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
              + YEIN  ++ TT +   ++ L+ AV V
Sbjct: 336 NRSTTYEINRTTLNTTRNPGSVKNLTAAVFV 366


>gi|108562771|ref|YP_627087.1| flagellar MS-ring protein [Helicobacter pylori HPAG1]
 gi|107836544|gb|ABF84413.1| flagellar basal-body M-ring protein [Helicobacter pylori HPAG1]
          Length = 567

 Score =  140 bits (352), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 122/410 (29%), Positives = 206/410 (50%), Gaps = 30/410 (7%)

Query: 23  LILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           LI A V++  +++F+    F    +    Y  L+  L+ SD   I   L +  I +++S 
Sbjct: 25  LIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEGLDSSDNALILQHLQQNQIPYKVSK 84

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           +  +I +P   V + RI LA+QG+P +S   G+E+FD    FG T F Q I  +RA+EGE
Sbjct: 85  D-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFD-TKDFGATDFDQNIKLIRAIEGE 141

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195
           ++RTI+S++ I+ A VHI +P    F      P+ASVM++ + P +  S      I++L+
Sbjct: 142 LSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLK-LKPDMKLSPTQILGIKNLI 200

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAF 252
           AAAVP L + +V +++  G+ +   ++  N   +  + L   Q  ++ +E  I   LA  
Sbjct: 201 AAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLHYKQNFENILENKIVNILAPI 260

Query: 253 LGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311
           +G  N   A V AE +   ++  +  +DP++ V     L +  + +   Q      V  N
Sbjct: 261 VGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSN 320

Query: 312 MPHV---SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGR 367
           +  V    D K P     E  +K +  +NYE+  K+I+     +  L RL+ AVVV+ G+
Sbjct: 321 IGPVQGLKDNKEP-----EKYEKSQNTTNYEVG-KTISEIKGEFGTLVRLNAAVVVD-GK 373

Query: 368 LTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
               L   A+  +     D  L +IN +V  A G N  RGD + +++ +F
Sbjct: 374 YKIALKDGANTLEYEPLSDESLQKINALVKQAIGYNQNRGDDVAVSNFEF 423


>gi|126730036|ref|ZP_01745848.1| flagellar M-ring protein FliF [Sagittula stellata E-37]
 gi|126709416|gb|EBA08470.1| flagellar M-ring protein FliF [Sagittula stellata E-37]
          Length = 522

 Score =  140 bits (352), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 121/411 (29%), Positives = 204/411 (49%), Gaps = 26/411 (6%)

Query: 22  ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81
           +++L + + + + ++  AR   ++P Y  LY  LE      +  AL    + + I   G 
Sbjct: 1   MVVLGATLAMVLAVWGLARL-ASAPSYSLLYAGLENGAAGDVVKALEARGVQYDI--RGG 57

Query: 82  SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
           +I VP S     R+ LA++GLP++    GYEL D ++ FG TS M +    RA EGE+AR
Sbjct: 58  AIFVPDSDRDGLRLTLASEGLPANGGQ-GYELLDGLSGFGTTSQMFDAAYWRAKEGELAR 116

Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV-YKSAEAIRHLVAAAVP 200
           TI S   I +ARVHI       F++    PTAS+ +     ++  + A A+++LVA+AVP
Sbjct: 117 TIVSNPQIASARVHIANSSANPFQRD-VTPTASISVTTTGGTLSAQQARALKYLVASAVP 175

Query: 201 NLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRS 260
            L+   V V+D  G L+ A E E    G +     A+  +    + + + A +GV N   
Sbjct: 176 GLEPEGVAVIDGKGGLIGA-EAEHGA-GPTADDKAALLRD---RVQRLMEARVGVGN--- 227

Query: 261 AVVAELNMDT----QQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVS 316
             V E+++DT    + IR   +DP+ +V  S    +   RSE +Q    VTV  N+P  +
Sbjct: 228 -AVVEVSVDTVTESELIRSRSFDPEGRVVISTDTEESTDRSE-NQGGGNVTVASNLPDGN 285

Query: 317 DRKVPLPRSLENTDKKE--EQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR 374
                      ++ K E  E+ N+E++  +   T     ++RL++AV+VN     +  G 
Sbjct: 286 AGG----GDTSSSQKAETRERVNFEVSETTREITRVPGAIKRLTVAVLVNGTYTEDGNGN 341

Query: 375 SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425
              +   +  L  +  +V++A G +  RGD IT+ S+ F   +   +G ++
Sbjct: 342 QTFEPLPEDELQALRDLVASAVGYDEERGDQITLKSLSFERPEGLGTGPLE 392


>gi|78776673|ref|YP_392988.1| flagellar MS-ring protein [Sulfurimonas denitrificans DSM 1251]
 gi|78497213|gb|ABB43753.1| Flagellar FliF M-ring protein [Sulfurimonas denitrificans DSM 1251]
          Length = 566

 Score =  139 bits (351), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 120/385 (31%), Positives = 204/385 (52%), Gaps = 29/385 (7%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
            Y+ L+  L   D  ++   L + NI + I DN + I VP + V K RI +A+ G+P +S
Sbjct: 51  KYETLFDSLSSEDAAKVIEQLEKDNIPYEILDN-NIIKVPKNAVYKERIAIASLGIPKNS 109

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
              G+ELFDK   FG TSF Q +  +RA+EGE++RTI S++ I +A V + +P    F +
Sbjct: 110 -GVGFELFDK-QEFGATSFDQNVKYLRAIEGELSRTINSLAPIESASVSLALPKETLFVE 167

Query: 167 IGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER 224
               PTASVMI  I      S +   I++LV+AAVPNL   +V ++D+ G+ L  ++ E 
Sbjct: 168 KQGEPTASVMITLIEGRKLSSKQIRGIKNLVSAAVPNLSASNVMLIDNDGETL-GDDDEM 226

Query: 225 NILGKSLSIVQAIQHEIEM----NINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYD 279
             +G+  S+ Q  + + E      I + ++ F+G +    + V  E +   Q     VYD
Sbjct: 227 AQMGELSSVQQNFKTKEEKKKQRKIIEVVSPFVGGEQKVVAQVTIEFDFSIQNSTSEVYD 286

Query: 280 PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSD-RKVPLPRSLENTDKKEEQSNY 338
           P++ V RS +LS+  ++ + S P     V   + ++     +   +++E  +K    +NY
Sbjct: 287 PENVV-RSEQLSE--EKRDGSAPAEVGGVPGTVSNIGPVEGLASNKTIEKYEKNTGTTNY 343

Query: 339 EINTKSIATTHDNY-KLERLSIAVVVN---------KGRLTEVLGRSADQGKIDSYLAEI 388
           E+  K+++TT   + +++R++ AVVV+          G+ T  L   A     +S L  +
Sbjct: 344 EVG-KTVSTTKSEFARIKRVTAAVVVDGKYNYKSDADGKPTSELEYEALS---ESDLEAL 399

Query: 389 NKIVSAATGINSRRGDTITITSMDF 413
             +VS + GI+  RGD I++ ++ F
Sbjct: 400 RALVSRSIGISEDRGDQISVQNLQF 424


>gi|308184148|ref|YP_003928281.1| flagellar MS-ring protein [Helicobacter pylori SJM180]
 gi|308060068|gb|ADO01964.1| flagellar MS-ring protein [Helicobacter pylori SJM180]
          Length = 567

 Score =  139 bits (351), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 122/410 (29%), Positives = 206/410 (50%), Gaps = 30/410 (7%)

Query: 23  LILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           LI A V++  +++F+    F    +    Y  L+  L+ SD   I   L +  I +++S 
Sbjct: 25  LIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFEGLDSSDNALILQHLQQNQIPYKVSK 84

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           +  +I +P   V + RI LA+QG+P +S   G+E+FD    FG T F Q I  +RA+EGE
Sbjct: 85  D-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFD-TKDFGATDFDQNIKLIRAIEGE 141

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195
           ++RTI+S++ I+ A VHI +P    F      P+ASVM++ + P +  S      I++L+
Sbjct: 142 LSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLK-LKPDMKLSPTQILGIKNLI 200

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAF 252
           AAAVP L + +V +++  G+ +   ++  N   +  + L   Q  ++ +E  I   LA  
Sbjct: 201 AAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLHYKQNFENILENKIVNILAPI 260

Query: 253 LGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311
           +G  N   A V AE +   ++  +  +DP++ V     L +  + +   Q      V  N
Sbjct: 261 VGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSN 320

Query: 312 MPHV---SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGR 367
           +  V    D K P     E  +K +  +NYE+  K+I+     +  L RL+ AVVV+ G+
Sbjct: 321 IGPVQGLKDNKEP-----EKYEKSQNTTNYEVG-KTISEIKGEFGTLVRLNAAVVVD-GK 373

Query: 368 LTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
               L   A+  +     D  L +IN +V  A G N  RGD + +++ +F
Sbjct: 374 YKIALKDGANALEYEPLSDESLKKINALVKQAIGYNQNRGDDVAVSNFEF 423


>gi|188527156|ref|YP_001909843.1| flagellar MS-ring protein [Helicobacter pylori Shi470]
 gi|188143396|gb|ACD47813.1| flagellar MS-ring protein [Helicobacter pylori Shi470]
 gi|308061699|gb|ADO03587.1| flagellar MS-ring protein [Helicobacter pylori Cuz20]
          Length = 567

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 123/410 (30%), Positives = 206/410 (50%), Gaps = 30/410 (7%)

Query: 23  LILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           LI A V++  +++F+    F    +    Y  L+ +L+ SD   I   L +  I ++I  
Sbjct: 25  LIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFERLDSSDNALILQHLQQNQIPYKILK 84

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           +  +I +P   V + RI LA+QG+P +S   G+E+FD    FG T F Q I  +RA+EGE
Sbjct: 85  D-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFD-TKDFGATDFDQNIKLIRAIEGE 141

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195
           ++RTI+S++ I+ A VHI +P    F      P+ASVM++ + P +  S      I++L+
Sbjct: 142 LSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLK-LKPDMKLSPTQILGIKNLI 200

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAF 252
           AAAVP L   +V +++  G+ +   ++  N   +  + L   Q  ++ +E  I   LA  
Sbjct: 201 AAAVPKLTTENVKIVNENGESIGEGDILENSKELALEQLRYKQNFENILENKIVNILAPI 260

Query: 253 LGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311
           +G  N   A V AE +   ++  +  +DP++ V     L +  + +   Q      V  N
Sbjct: 261 VGGKNKVVARVNAEFDFSQRKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSN 320

Query: 312 MPHV---SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGR 367
           +  V    D K P     E  +K +  +NYE+  K+I+     +  L RL+ AVVV+ G+
Sbjct: 321 IGPVQGLKDNKEP-----EKYEKSQNTTNYEVG-KTISEIKGEFGTLVRLNAAVVVD-GK 373

Query: 368 LTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
              VL   A+  +     D  L +IN +V  A G N  RGD + +++ +F
Sbjct: 374 YKIVLKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDDVAVSNFEF 423


>gi|298736711|ref|YP_003729241.1| flagellar M-ring protein FliF [Helicobacter pylori B8]
 gi|298355905|emb|CBI66777.1| flagellar M-ring protein FliF [Helicobacter pylori B8]
          Length = 567

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 121/410 (29%), Positives = 205/410 (50%), Gaps = 30/410 (7%)

Query: 23  LILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           LI A V++  +++F+    F    +    Y  L+  L+ SD   I   L +  I +++S 
Sbjct: 25  LIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEGLDSSDNALILQHLQQNQIPYKVSK 84

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           +  +I +P   V + RI LA+QG+P +S   G+E+FD    FG T F Q I  +RA+EGE
Sbjct: 85  D-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFD-TKDFGATDFDQNIKLIRAIEGE 141

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195
           ++RTI+S++ I+ A VHI +P    F      P+ASVM++ + P +  S      I++L+
Sbjct: 142 LSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLK-LKPDMKLSPTQILGIKNLI 200

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAF 252
           AAAVP L + +V +++  G+ +   ++  N   +  + L   Q  ++ +E  I   LA  
Sbjct: 201 AAAVPKLTIDNVKIVNENGESIGEGDIPENSKELALEQLHYKQNFENILENKIVNILAPI 260

Query: 253 LGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311
           +G  N   A V AE +   ++  +  +DP++ V     L +  + +   Q      V  N
Sbjct: 261 VGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGTPKKQVGGVPGVVSN 320

Query: 312 MPHV---SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGR 367
           +  V    D K P     E  +K +  +NYE+  K+I+     +  L RL+ AVVV+ G+
Sbjct: 321 IGPVQGLKDNKEP-----EKYEKSQNTTNYEVG-KTISEIKGEFGTLVRLNAAVVVD-GK 373

Query: 368 LTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
               L    +  +     D  L +IN +V  A G N  RGD + +++ +F
Sbjct: 374 YKIALKDGTNTLEYEPLSDESLQKINALVKQAIGYNQNRGDDVAVSNFEF 423


>gi|317010623|gb|ADU84370.1| flagellar MS-ring protein [Helicobacter pylori SouthAfrica7]
          Length = 567

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 121/407 (29%), Positives = 206/407 (50%), Gaps = 24/407 (5%)

Query: 23  LILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           LI A V++  +++F+    F    +    Y  L+ +L+ SD   I   L +  I +++S 
Sbjct: 25  LIAAGVLITALIVFLLIYPFKEKNYVQGGYGVLFERLDPSDNALILQHLQQNQIPYKVSK 84

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           +  +I +P   V + RI LA+QG+P +S   G+E+FD    FG T F Q I  +RA+EGE
Sbjct: 85  D-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFD-TKDFGATDFDQNIKLIRAIEGE 141

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195
           ++RTI+S++ I+ A VHI +P    F      P+ASVM++ I P +  S      I++L+
Sbjct: 142 LSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLK-IKPDMKLSPTQILGIKNLI 200

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAF 252
           AAAVP L + +V +++  G+ +   ++  N   +  + L   Q  ++ +E  I   LA  
Sbjct: 201 AAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLHYKQNFENILENKIVNILAPI 260

Query: 253 LGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311
           +G  N   A V AE +   ++  +  +DP++ V     L +  + +   Q      V  N
Sbjct: 261 VGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGTPKKQIGGVPGVVSN 320

Query: 312 MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGRLTE 370
           +  V   K    +  E  +K +  +NYE+  K+I+     +  L RL+ AVVV+ G+   
Sbjct: 321 IGPVQGLKD--NKEQEKYEKSQNTTNYEVG-KTISEIKGEFGTLVRLNAAVVVD-GKYKI 376

Query: 371 VLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
            L   A+  +     D  L +IN +V  A G N  RGD + +++ +F
Sbjct: 377 ALKDGANTLEYEPLSDESLQKINALVKQAIGYNQNRGDDVAVSNFEF 423


>gi|208434294|ref|YP_002265960.1| flagellar basal-body M-ring protein [Helicobacter pylori G27]
 gi|208432223|gb|ACI27094.1| flagellar basal-body M-ring protein [Helicobacter pylori G27]
          Length = 567

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 122/410 (29%), Positives = 206/410 (50%), Gaps = 30/410 (7%)

Query: 23  LILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           LI A V++  +++F+    F    +    Y  L+  L+ SD   I   L +  I +++S 
Sbjct: 25  LIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEGLDPSDNALILQHLQQNQIPYKVSR 84

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           +  +I +P   V + RI LA+QG+P +S   G+E+FD    FG T F Q I  +RA+EGE
Sbjct: 85  D-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFD-TKDFGATDFDQNIKLIRAIEGE 141

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195
           ++RTI+S++ I+ A VHI +P    F      P+ASVM++ + P +  S      I++L+
Sbjct: 142 LSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLK-LKPDMKLSPTQILGIKNLI 200

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAF 252
           AAAVP L + +V +++  G+ +   ++  N   +  + L   Q  ++ +E  I   LA  
Sbjct: 201 AAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLHYKQNFENILENKIVNILAPI 260

Query: 253 LGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311
           +G  N   A V AE +   ++  +  +DP++ V     L +  + +   Q      V  N
Sbjct: 261 VGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGTSKKQVGGVPGVVSN 320

Query: 312 MPHV---SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGR 367
           +  V    D K P     E  +K +  +NYE+  K+I+     +  L RL+ AVVV+ G+
Sbjct: 321 IGPVQGLKDNKEP-----EKYEKSQNTTNYEVG-KTISEIKGEFGTLVRLNAAVVVD-GK 373

Query: 368 LTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
               L   A+  +     D  L +IN +V  A G N  RGD + +++ +F
Sbjct: 374 YKIALKDGANTLEYEPLSDESLQKINALVKQAIGYNQNRGDDVAVSNFEF 423


>gi|116696304|ref|YP_841880.1| flagellar MS-ring protein [Ralstonia eutropha H16]
 gi|113530803|emb|CAJ97150.1| Flagellar M-ring protein [Ralstonia eutropha H16]
          Length = 576

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/266 (32%), Positives = 144/266 (54%), Gaps = 12/266 (4%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  SP Y  LY  L   D   +  +L + N+ ++ ++ G ++ VP+  V + R+ LA+Q
Sbjct: 42  LWSRSPDYKVLYSNLSERDGGAVLQSLQQMNVPYKFAEGGGAVMVPAEKVHETRLRLASQ 101

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP S + +G EL D    FG++ F +++   R LEGE+AR+I+SI+ + +ARVH+ +P 
Sbjct: 102 GLPKSGT-AGMELMDN-QKFGISQFAEQVNYQRGLEGELARSIESIAAVQSARVHLAIPK 159

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +   +PTAS+++     RAI+        AI HLV+++VP L    ++++D  G 
Sbjct: 160 PTLFVRERQKPTASIVLQLYPGRAID---EGQVAAISHLVSSSVPELTPKSISIVDQHGN 216

Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LL+    ER +    L  VQA++      I   L   +G DN R+ V A+++    +  +
Sbjct: 217 LLSNTGNERMLDATQLKYVQALEQNYLKRIEAILTPIVGKDNVRAQVTADVDFSIVEHTD 276

Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQ 301
             Y P+    RS   S+  Q SE++Q
Sbjct: 277 ESYKPNQDPTRSAIRSQ--QTSESTQ 300



 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 44/86 (51%)

Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE 387
           ++++++   NYE++            + RLS+AVVVN  +  +  G+   +    + LA+
Sbjct: 373 SSNRRDSTVNYELDRSVRHVQQAPGGVRRLSVAVVVNYRQQADAKGKLVAEPLPPALLAQ 432

Query: 388 INKIVSAATGINSRRGDTITITSMDF 413
           I  +   A G ++ RGD+I + +  F
Sbjct: 433 IQNLTKEAMGFSADRGDSINVVNSPF 458


>gi|291277395|ref|YP_003517167.1| flagellar M-ring protein [Helicobacter mustelae 12198]
 gi|290964589|emb|CBG40442.1| flagellar M-ring protein [Helicobacter mustelae 12198]
          Length = 566

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 133/473 (28%), Positives = 224/473 (47%), Gaps = 35/473 (7%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVN----SPHYDNLYVKLEV 57
           A+  Q+L FF+  +   + R++++  VI           F  N    S  Y  L+  L  
Sbjct: 5   AVFSQILNFFQRFSK--KQRVIVIGGVIAAIAFFVFLIVFATNGKSRSDGYSVLFEGLTP 62

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
            D   I   L +  I ++I  N  +I +P   V + RI LA+QG+P +S   G+E+FD  
Sbjct: 63  GDNALIIQHLQQNQIPYKIP-NEETILIPRDKVYEQRIELASQGIPKNSK-VGFEIFD-T 119

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
             FG+T     +  +RA+EGE++RTI+S++ I  A V I MP    F      PTASVM+
Sbjct: 120 KDFGMTDEEHRVKFLRAIEGELSRTIESLAPIQKANVLIAMPKSSVFVSQQTPPTASVML 179

Query: 178 RAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKSLS 232
                +   SA+   I++LVAAA+PNL + +V ++   G+ L  ++     + +    L 
Sbjct: 180 GIRQGAALTSAQIFGIKNLVAAAIPNLTVENVKLVSQNGEPLGEDDEITSSKEVAAAQLK 239

Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-----TQQIREIVYDPDSKVERS 287
             Q I+  +E  I   L+  +G ++    VVA++N D      + ++EI YDP++ V   
Sbjct: 240 YKQNIERALEAKILNILSPVVGGED---KVVAKVNADFDFSQRKSLQEI-YDPNNVVRSE 295

Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
             L +  + ++  Q         N+  V        R  E  +K +  +NYE+  K++  
Sbjct: 296 QNLEEKREGAQEKQIGGVPGAVSNIGPVQGLDSQNGR--EKYEKTQNTTNYEVG-KTVNE 352

Query: 348 THDNYK-LERLSIAVVVNKGRLTEVLGRSADQGKI------DSYLAEINKIVSAATGINS 400
               +  L RLS AVVV+ GR   VL +      +      ++ + +IN +V  A G N 
Sbjct: 353 IKGEFGVLTRLSAAVVVD-GRYKRVLNKEDGLEHMEFVPLSEAEMEKINLLVKQAIGYNQ 411

Query: 401 RRGDTITITSMDF-LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452
           +RGD +T+++ +F  ++Q F        F   L  +       L +L+  L++
Sbjct: 412 KRGDDVTVSNFEFNAKSQTFVPEGKMDRFASKLEMYLKPFTPLLKYLIVALII 464


>gi|74101647|gb|AAZ99737.1| FliFL [Aeromonas hydrophila]
          Length = 580

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 114/417 (27%), Positives = 203/417 (48%), Gaps = 46/417 (11%)

Query: 22  ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81
           I +LA+++   I++ +    + +S +Y  LY K E+ D   I   L +  + FR+  +  
Sbjct: 39  IALLAAIVAGTIVVIL----WTSSKNYVPLYGKQELYDTANIMEMLEKEQVPFRLEKSTG 94

Query: 82  SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
            I VP S +   R+ LAA+G+  ++  +G E  D V   G + FM+      ALEGE+AR
Sbjct: 95  QILVPESQLAHVRMALAARGV-RAAMPAGLEGLDNVTGLGTSEFMEGARYRHALEGELAR 153

Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIG---ARPTASVMIRAINPSV---YKSAEAIRHLV 195
           TI S+  + +ARVH+ +P    F  +G    +P+ASVM+  + P         EAI +LV
Sbjct: 154 TIISLDAVRSARVHLAIPKRTLF--VGRDEEKPSASVML-DLQPGQAMELGQVEAIANLV 210

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK----SLSIVQAIQHEIEMNINKALAA 251
           A ++  +  G VT++D  G+LL+A   ++   GK     +  V+ ++  I    +  L  
Sbjct: 211 AGSISGMKPGAVTIVDQAGQLLSAELGDKAGFGKQSVQQMEYVRKLEQYIRQRASDMLYP 270

Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE-- 309
            LG  NFR  + A++N +  +  +   DP   V      +K++ +S+ +    A+ +   
Sbjct: 271 MLGTGNFRVQIAADVNFNAVEETQQQLDPQGVV------TKESTKSDKTIDALALGIPGA 324

Query: 310 -QNMPHVSDRKVPLPRSLENTDKKEEQSN------------YEINTKSIATTHDNYKLER 356
             N P  +  K   P + + T   E Q N            YE +   + T +   +LE+
Sbjct: 325 LSNRPPETTPKSEQPAANQGTTSSETQKNDSRTERQEINKQYENSRTIVHTRYQQGRLEK 384

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           +++++++N+    +  G SA+Q      L +I ++V  + G +  RGD I++   DF
Sbjct: 385 MNVSILLNQQSAPKD-GWSAEQ------LEQIRQMVERSVGFDDARGDQISLQVFDF 434


>gi|317012189|gb|ADU82797.1| flagellar MS-ring protein [Helicobacter pylori Lithuania75]
          Length = 567

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 122/410 (29%), Positives = 206/410 (50%), Gaps = 30/410 (7%)

Query: 23  LILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           LI A V++  +++F+    F    +    Y  L+  L+ SD   I   L +  I +++S 
Sbjct: 25  LIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEGLDSSDNALILQHLQQNQIPYKVSK 84

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           +  +I +P   V + RI LA+QG+P +S   G+E+FD    FG T F Q I  +RA+EGE
Sbjct: 85  D-DTILIPRDKVYEERITLASQGIPKTSK-VGFEIFD-TKDFGATDFDQNIKLIRAIEGE 141

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195
           ++RTI+S++ I+ A VHI +P    F      P+ASVM++ + P +  S      I++L+
Sbjct: 142 LSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLK-LKPDMKLSPTQILGIKNLI 200

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAF 252
           AAAVP L + +V +++  G+ +   ++  N   +  + L   Q  ++ +E  I   LA  
Sbjct: 201 AAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLHYKQNFENILENKIVNILAPI 260

Query: 253 LGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311
           +G  N   A V AE +   ++  +  +DP++ V     L +  + +   Q      V  N
Sbjct: 261 VGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSN 320

Query: 312 MPHV---SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGR 367
           +  V    D K P     E  +K +  +NYE+  K+I+     +  L RL+ AVVV+ G+
Sbjct: 321 IGPVQGLKDNKEP-----EKYEKSQNTTNYEVG-KTISEIKGEFGTLVRLNAAVVVD-GK 373

Query: 368 LTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
               L   A+  +     D  L +IN +V  A G N  RGD + +++ +F
Sbjct: 374 YKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDDVAVSNFEF 423


>gi|225159031|ref|ZP_03725341.1| flagellar M-ring protein FliF [Opitutaceae bacterium TAV2]
 gi|224802410|gb|EEG20672.1| flagellar M-ring protein FliF [Opitutaceae bacterium TAV2]
          Length = 532

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 124/442 (28%), Positives = 201/442 (45%), Gaps = 33/442 (7%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  LY +L   D   I  AL    + +R S  G S+ VP++ V + R+ LAA+
Sbjct: 39  IWSRQPDYQLLYGRLADKDAASIISALQAQGVPYRASAGGGSVYVPANQVHRLRMDLAAK 98

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP      G+E+FDK   FGL+ F+Q     RAL+GE+ARTI  + G+  ARV IV P+
Sbjct: 99  GLPGGE-GVGFEIFDK-GQFGLSDFVQRTNYTRALQGELARTISQLDGVARARVMIVQPE 156

Query: 161 MGSFR-KIGARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
                   G +PTASV +    P +  ++  +IR+LVA AV  L    V V+D  G++L+
Sbjct: 157 NRLLLIDQGVKPTASVFVELTGPRLDTEAVNSIRNLVANAVQGLKPAQVAVVDQKGRVLS 216

Query: 219 ANEMERNILGKSLSIV---QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           +   +   L  + S +   Q ++      +   L   +G  N    V AE++ +     E
Sbjct: 217 SELQDDPTLADASSQMRYRQQVEEYFAKKVESLLLPVVGAGNAVVRVSAEIDTEAATRVE 276

Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN--MPHVSDRKVPLPRSLENTDKKE 333
             YDPD +V R+   ++D   S  ++    V V  N   P  +D+    P    +  +K 
Sbjct: 277 ERYDPDGQVVRTQTSTEDVTNSSEARSGGVVGVTANATTPPPADQA--RPTVTNDQTRKN 334

Query: 334 EQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVS 393
              +YEIN     TT     +  L+ AV +         G +A   + ++ +A + ++V 
Sbjct: 335 RTLSYEINRTLTNTTRSPGTILGLTAAVFIAP--RPPAAGGAAPGPRTEAEIAALRQVVV 392

Query: 394 AATGINSRRG----DTITITSMDFLE-------NQLFNSGTVQVSFMDILSRHFATVINA 442
            A G+    G    + +T+  + F          Q+     VQ  +++  SR+ A  +  
Sbjct: 393 NALGLRPSPGRRIEELVTLQEVPFQAAGVDDRIEQIRTETRVQ-GWIEAASRYVAVAVAV 451

Query: 443 LVFLVGTLLVTFLGLHALRRLH 464
           L+F        F+    L+R H
Sbjct: 452 LIF--------FIFWRMLKRQH 465


>gi|94500269|ref|ZP_01306802.1| flagellar M-ring protein [Oceanobacter sp. RED65]
 gi|94427568|gb|EAT12545.1| flagellar M-ring protein [Oceanobacter sp. RED65]
          Length = 577

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 113/424 (26%), Positives = 200/424 (47%), Gaps = 26/424 (6%)

Query: 48  YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           Y  L   LE  +   I   L E  ID+RI+     ++VP + +  AR+ LA   +    +
Sbjct: 80  YRPLISNLEDYNAKEILQTLDEKGIDYRINPTTGIVTVPEAEIHDARLALAPI-VAEIDT 138

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
             G EL D+    G + F++     R LEGE+ARTI S+  +  ARVH+ +P    F + 
Sbjct: 139 TVGLELLDQEQGLGTSQFIESARYRRGLEGELARTIASLQSVRNARVHLALPKQSVFVRD 198

Query: 168 GARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMER 224
              P ASV +        K   AEAI +L+A+++P L + +VT++D  G LL+   + E 
Sbjct: 199 DREPRASVFLEIYGGKGLKREQAEAIINLIASSIPELPVENVTLVDQKGNLLSKEGQDEE 258

Query: 225 NILG-KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK 283
           ++L  K     + +++ +   + + L   LG DNF++ V A+++    +  + +++PD  
Sbjct: 259 DLLATKQFDYTRKVENSLHQRVQRILEPVLGSDNFQAEVSADVDFTMVEQTQELFNPDLI 318

Query: 284 VERSIRL--SKDAQRSE-------TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEE 334
             RS +    +  ++ E       ++QP  A  V +    V +   P+ + +E   K E 
Sbjct: 319 ALRSEQTLNQEKVEKPEGGIPGALSNQPPGAAEVPE---EVDENGNPVAQPIER--KSEA 373

Query: 335 QSNYEINTKSIATTHDNYKLERLSIAVVVN-KGRLTEVLGRSADQGKIDSYLAEINKIVS 393
             NYE++     T H   +L RL+++V VN + ++    G        ++ L  +  +V 
Sbjct: 374 TRNYEVDRTLSHTQHQVGRLRRLTVSVAVNDREKVNPETGVVESVPWTEAELKRLELLVK 433

Query: 394 AATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVT 453
            + G N+ RGD++++       N LF  G V++   D   + +   I   V     LL+ 
Sbjct: 434 DSVGFNAARGDSVSVV------NSLFLGGAVELGEPDFWKQPWFWEIVKQVLAGLFLLIL 487

Query: 454 FLGL 457
             G+
Sbjct: 488 IFGV 491


>gi|261839198|gb|ACX98963.1| flagellar M-ring protein FliF [Helicobacter pylori 52]
          Length = 567

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 122/410 (29%), Positives = 206/410 (50%), Gaps = 30/410 (7%)

Query: 23  LILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           LI A V++  +++F+    F    +    Y  L+ +L+ SD   I   L +  I ++I  
Sbjct: 25  LIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFERLDSSDNALILQHLQQNQIPYKILK 84

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           +  +I +P   V + RI LA+QG+P +S   G+E+FD    FG T F Q I  +RA+EGE
Sbjct: 85  D-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFD-TKDFGATDFDQNIKLIRAIEGE 141

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195
           ++RTI+S++ I+ A VHI +P    F      P+ASVM++ + P +  S      I++L+
Sbjct: 142 LSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLK-LKPDMKLSPTQILGIKNLI 200

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAF 252
           AAAVP L + +V +++  G+ +   ++  N   +  + L   Q  ++ +E  I   LA  
Sbjct: 201 AAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLRYKQNFENILENKIVNILAPI 260

Query: 253 LGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311
           +G  N   A V AE +   ++  +  +DP++ V     L +  + +   Q      V  N
Sbjct: 261 VGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSN 320

Query: 312 MPHV---SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGR 367
           +  V    D K P     E  +K +  +NYE+  K+I+     +  L RL+ AVVV+ G+
Sbjct: 321 IGPVQGLKDNKEP-----EKYEKSQNTTNYEVG-KTISEIKGEFGTLVRLNAAVVVD-GK 373

Query: 368 LTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
               L   A+  +     D  L +IN +V  A G N  RGD + +++ +F
Sbjct: 374 YKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDDVAVSNFEF 423


>gi|254487125|ref|ZP_05100330.1| flagellar M-ring protein FliF, putative [Roseobacter sp. GAI101]
 gi|214043994|gb|EEB84632.1| flagellar M-ring protein FliF, putative [Roseobacter sp. GAI101]
          Length = 422

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 122/417 (29%), Positives = 207/417 (49%), Gaps = 27/417 (6%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           AI+ Q L  + +G +  R   ++ A++ +   +L M+    V SP    LY  LE     
Sbjct: 3   AIVQQFLNIW-AGLTFRRQLTIVAATLAMFFGVLAMSK--MVASPTLTLLYAGLESGAAG 59

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            +  AL +  + + +   G SI V +    + R+ LA++GLP++  N GYEL D +  FG
Sbjct: 60  DVVRALEQRGVVYEV--RGGSIFVDAKARDELRLTLASEGLPANG-NRGYELLDNLTGFG 116

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
            TS M +    RA EGE+ARTI +   I  ARVHI       F++ G  P ASV +    
Sbjct: 117 TTSQMFDAAYWRAKEGELARTIVANPQISMARVHIAGTGSNPFQR-GVVPKASVSLTPNG 175

Query: 182 PSVYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240
             +  + A+A+R LVA+AV  L   DV V+D+ G L+ +++        ++   Q    +
Sbjct: 176 GEISAAEAKAVRFLVASAVAGLSPDDVAVIDANGSLIGSSD-------DAMPTSQG-DDK 227

Query: 241 IEM---NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
            EM    + + L A +G+ N    V  +   +++ +RE  +DP+ +V     +S D +  
Sbjct: 228 AEMFKEKVQRILEARVGLGNAIVEVSVDTETESESVRERRFDPEGRVA----ISTDTEER 283

Query: 298 ETSQPESA---VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
             S  ++    VTV  N+P  ++ +     S  +  +  E+ NYE++            +
Sbjct: 284 SNSSSDAGSGDVTVASNLPS-NNGQPGGDSSSSSNSETRERVNYEVSETEREIVRAPGAV 342

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
           +R+++AV++N    T+  G    Q + D+ L  + ++VS+A G ++ RGD ITI SM
Sbjct: 343 KRITVAVLINDAIATDESGVETSQPRDDTELEALRELVSSAVGFDAERGDIITIKSM 399


>gi|254496581|ref|ZP_05109449.1| flagellar MS-ring protein [Legionella drancourtii LLAP12]
 gi|254354205|gb|EET12872.1| flagellar MS-ring protein [Legionella drancourtii LLAP12]
          Length = 547

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 116/444 (26%), Positives = 215/444 (48%), Gaps = 37/444 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           MA+ D          SL   R + L   +   + + +A   +   P+Y  LY ++   D 
Sbjct: 1   MALADNASMVAAKFASLSIPRQIGLLIGLAASVAVGLAVVLWSRDPNYVPLYTQMNTRDA 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             +  AL    I+F+I +N S+I +PS+ +   R+ LAA+GLP     S  ELF   N+F
Sbjct: 61  AEVVSALERNGIEFKIDNNNSTILIPSANLQSTRLKLAAEGLPRDPVAS-EELFSSGNAF 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
             + FM+     +ALE E+ARTI   + I AARVH+ +P   +F +   +P+ASV I   
Sbjct: 120 NSSQFMENARYKQALEAELARTISKFNDIKAARVHLAIPRESAFVRDIHQPSASVFI--- 176

Query: 181 NPSVYKSAEAIRH-------LVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL----GK 229
              VY   E  +H       LVA+++PNL    VTV+D  G+LL  NE     L     +
Sbjct: 177 --DVYSGLELKKHTVSAIVNLVASSIPNLSASRVTVVDQDGQLL--NEGSGQTLFTDTER 232

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD---SKVER 286
            L   Q ++ +    I   L   LG    R+ V A+++  + +  + +++P+    + E+
Sbjct: 233 FLDYRQNLEQQYAQKIQDILTPLLGYGRVRAKVSADIDFTSYEQTQEMFNPELPSLRSEQ 292

Query: 287 SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSL-------------ENTDKKE 333
           +++   +A       P +     Q  P ++++    P +              +++D + 
Sbjct: 293 TMQEKHNAASDAIGVPGTLSNTPQPNPSLNNKNPAAPNAQQQQQPAQSSSDANQSSDTRT 352

Query: 334 EQS-NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY-LAEINKI 391
           + + N+E++     T +    ++RLS+AV+V+   + +   ++  +  + +  + +I  +
Sbjct: 353 QSTKNFELDKTISHTKNQPGTIKRLSVAVLVDNPAIMDTKTKTMIKKALTAKEIDQIKLL 412

Query: 392 VSAATGINSRRGDTITITSMDFLE 415
           V+ A G+NS+RGD++ + + DF++
Sbjct: 413 VADAIGLNSQRGDSLNVINSDFVK 436


>gi|297617138|ref|YP_003702297.1| flagellar M-ring protein FliF [Syntrophothermus lipocalidus DSM
           12680]
 gi|297144975|gb|ADI01732.1| flagellar M-ring protein FliF [Syntrophothermus lipocalidus DSM
           12680]
          Length = 512

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 120/401 (29%), Positives = 203/401 (50%), Gaps = 27/401 (6%)

Query: 21  RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80
           ++LI  +V+L  + L M       + +Y+ LY  L V D   I+  L E  I +R+SD G
Sbjct: 27  KVLISGAVLLTLVSLGMLLSS-QTAKNYEPLYSGLSVEDAAAITKKLDELKISYRLSDEG 85

Query: 81  SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140
           S+I VPS    + R+ LA +GLP  +  +G+ELF +  SFG T   + +  + AL+GE+ 
Sbjct: 86  STILVPSEQKYQVRLQLAGEGLPKGT--AGFELF-QSTSFGETETDKRVKYLTALQGELV 142

Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-INPSVY-KSAEAIRHLVAAA 198
           RTI+S+  I +ARVH+V+P+   +    A  TASV+++  I   +  +    I HLVA +
Sbjct: 143 RTIESLDKIESARVHLVLPEPRLYVDQEAPATASVVLKVKIGEELTNREISGIVHLVANS 202

Query: 199 VPNLDMGDVTVLDSTGKLLTANEMERNILGKS-LSIVQ-AIQHEIEMNINKA----LAAF 252
           V  L   +V V+D  G LL+A+    + +  + LS+ Q A++ ++E    +A    L A 
Sbjct: 203 VEKLKPENVVVVDQYGNLLSADIPSADSMASAELSVQQMAVKRQLEREKQQAVQSMLDAT 262

Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNM 312
           LG       V AELN D  +     +DP+ +V  S    +++  S  +   ++  V+ N+
Sbjct: 263 LGPGKSVVRVNAELNFDEVEQYSQDFDPEQRVVVSKHTVEESNTSSNTGAAASPGVDTNV 322

Query: 313 PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372
           P     +     S   ++K E+  NYE +     T      ++R+++AV+V++G      
Sbjct: 323 PTYQGTE-GQGTSSSTSEKTEQTVNYEGDKVETKTKVAPGAIKRMTVAVLVDEG------ 375

Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
                    +S   EI + V  A G + +R D++ ++ M F
Sbjct: 376 --------FESKREEIVEAVKNAVGADEKRNDSVYVSFMKF 408


>gi|220917658|ref|YP_002492962.1| flagellar M-ring protein FliF [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955512|gb|ACL65896.1| flagellar M-ring protein FliF [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 533

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 114/414 (27%), Positives = 201/414 (48%), Gaps = 26/414 (6%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L +LL    +G  L    +L+  +++ + +    A R   +S  Y   +  L   D    
Sbjct: 11  LPRLLGALPAGLKL----VLVAGALVAIGVAALSAVR---SSEAYQYAFTNLTPEDSAEA 63

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           + AL  A + +R+   GS+++VP+S V  AR+ LA  GLP      G+E+FD+    G++
Sbjct: 64  AGALGAAGVPYRLEAGGSALAVPASRVYDARLLLAGAGLPRGG-GVGFEIFDR-GDLGVS 121

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
            F Q++   RA EGE+ARTI  ++ + +ARVH+ +P+ G +R    RP A+ ++  + P 
Sbjct: 122 EFTQKVNLRRATEGELARTISRLAQVRSARVHLTLPEKGLYRDQD-RPAAAAVVVNLQPG 180

Query: 184 V---YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240
                +    IRHLV++AV  L    V+V+D  G++L+    +   LG+++   + ++ +
Sbjct: 181 RTLDQREISGIRHLVSSAVAGLAPAGVSVVDGRGEVLS----DEGPLGEAMGYQRRMERD 236

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           +E  I   L   +G     + V A L+    Q    V DPDS   RS R       S+ +
Sbjct: 237 LERRIVDLLGQAVGPGAVVARVTASLDQTEVQSSAQVLDPDSATLRSERKLTQQSSSDGA 296

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
            P        N P          R   +   +++  NY+++T +  +     +LER+S+A
Sbjct: 297 GPAGVAGAAANQPLAPPAPAAGARGRSSASTEDQTRNYDVSTTTTTSVARVPRLERISVA 356

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           V+V+          +A   + D+ +A + ++   A G ++ RGDT  I+S  F+
Sbjct: 357 VLVDG---------AAGAPRADAEIARLGELAKRAVGFDADRGDTFEISSSPFV 401


>gi|317406225|gb|EFV86471.1| flagellar M-ring protein FliF [Achromobacter xylosoxidans C54]
          Length = 558

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 123/459 (26%), Positives = 209/459 (45%), Gaps = 64/459 (13%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            + + P Y  L+  L+  D   I  AL   N+ ++ +D G+++ VP+  V  AR+ LA+Q
Sbjct: 45  MWSSEPKYKVLFSNLDDRDGGAIVTALGTMNVPYKYNDTGTALLVPADRVYDARLQLASQ 104

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   S  G+EL D    FG + F ++I   R LEGE+AR+I+S+  +  ARVH+ MP 
Sbjct: 105 GLPRGGS-VGFELMDNAR-FGASQFAEQINYQRGLEGELARSIESMHTVQHARVHLAMPR 162

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    PTASV++          A+  AI  LVA++VP L   +V+++D  G+LL+
Sbjct: 163 QSLFVRERQPPTASVLLNVYPGRSLSDAQVSAISWLVASSVPELTAENVSIVDQNGRLLS 222

Query: 219 ANEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
           A   E R +    + +V+  +      I   L   +G  N  +   AE++   ++    V
Sbjct: 223 APTGEGRGMDADQMRMVRETEQRTVERILTILNPLVGPGNVHAQASAEMDFSRREETSEV 282

Query: 278 YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV------SDRKVPLPRSLEN--- 328
           Y P+ +  ++   S+  Q SE++Q    +   Q +P        ++ + P+    +    
Sbjct: 283 YRPNQEPGQAAIRSQ--QTSESNQ--RGINPAQGVPGALSNQPPANAQAPIANPPQTQPP 338

Query: 329 -----------------------------TDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
                                        +D+++  +NYE++            L+RLS+
Sbjct: 339 RPGQPQQQGQQQQQQTATGAGAQGAGGTVSDRRDATTNYEVDRTISHIKQPVGMLKRLSV 398

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AVVVN  R  +       Q      L+++  +V  A G +  RGD++ +       N  F
Sbjct: 399 AVVVNYVRDKD----GEPQALPPEELSKLTNLVREAMGYSESRGDSLNLV------NSQF 448

Query: 420 NSGTVQVSFM---DILSRHFATVINALVFLVGTLLVTFL 455
           N G   V      +++S  F T+   L +LVG +L  +L
Sbjct: 449 NDGPPAVPMWRDPEMIS-LFKTI---LAWLVGGVLALWL 483


>gi|15611393|ref|NP_223044.1| flagellar MS-ring protein [Helicobacter pylori J99]
 gi|4154846|gb|AAD05899.1| FLAGELLAR M-RING PROTEIN [Helicobacter pylori J99]
          Length = 567

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 122/410 (29%), Positives = 206/410 (50%), Gaps = 30/410 (7%)

Query: 23  LILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           LI A V++  +++F+    F    +    Y  L+ +L+ SD   I   L +  I +++  
Sbjct: 25  LIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFERLDSSDNALILQHLQQNQIPYKVLK 84

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           +  +I VP   V + RI LA+QG+P +S   G+E+FD    FG T F Q I  +RA+EGE
Sbjct: 85  D-DTILVPKDKVYEERITLASQGIPKTSK-VGFEIFD-TKDFGATDFDQNIKLIRAIEGE 141

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195
           ++RTI+S++ I+ A VHI +P    F      P+ASVM++ + P +  S      I++L+
Sbjct: 142 LSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLK-LKPDMKLSPTQILGIKNLI 200

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAF 252
           AAAVP L + +V +++  G+ +   ++  N   +  + L   Q  ++ +E  I   LA  
Sbjct: 201 AAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLRYKQNFENILENKIVNILAPI 260

Query: 253 LGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311
           +G  N   A V AE +   ++  +  +DP++ V     L +  + +   Q      V  N
Sbjct: 261 VGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSN 320

Query: 312 MPHV---SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGR 367
           +  V    D K P     E  +K +  +NYE+  K+I+     +  L RL+ AVVV+ G+
Sbjct: 321 IGPVQGLKDNKEP-----EKYEKSQNTTNYEVG-KTISEIKGEFGTLVRLNAAVVVD-GK 373

Query: 368 LTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
               L   A+  +     D  L +IN +V  A G N  RGD + +++ +F
Sbjct: 374 YKIALEDGANALEYEPLSDESLKKINALVKQAIGYNQNRGDDVAVSNFEF 423


>gi|332559789|ref|ZP_08414111.1| FliF2 [Rhodobacter sphaeroides WS8N]
 gi|332277501|gb|EGJ22816.1| FliF2 [Rhodobacter sphaeroides WS8N]
          Length = 533

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 124/450 (27%), Positives = 221/450 (49%), Gaps = 27/450 (6%)

Query: 18  GRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS 77
           GR R +++ + + +  +  +        P    LY  L+ +    +  AL      + + 
Sbjct: 18  GRRRAVVVGATVAM-FLAVLGLSQLAGRPPMALLYAGLQGAAAGEVVTALEAQGAAYEV- 75

Query: 78  DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137
             G S+ V ++   + R+ LA +GLP++ + +GYEL D ++ FG TS M +   +RA EG
Sbjct: 76  -RGDSVYVEAARRDEIRMKLAGEGLPATGA-AGYELLDGLSGFGTTSQMFDAAYLRAKEG 133

Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVA 196
           E+ARTI +   + AARVHI  P    F++   RPTASV +     +V  + A A +HLVA
Sbjct: 134 ELARTILASPQVKAARVHIAQPAAQPFQRE-QRPTASVTVTTSGGAVTANQARAFKHLVA 192

Query: 197 AAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVD 256
           +AV  L   DV+V+DS   L+ + + E++    + +  ++   E+  N+ + L A  G  
Sbjct: 193 SAVAGLQPEDVSVIDSVMGLIRSGD-EKD---SATAAGESRAAELRSNVERLLEARAGPG 248

Query: 257 NFRSAVVAELNMDTQQIREIV----YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNM 312
                 V E+++D +  RE +    +DP  +V   I      + S +++P   VTV  N+
Sbjct: 249 R----AVVEVSVDVETARESIVEKSFDPKGRV--PISSETQEKSSNSTEPSPDVTVASNL 302

Query: 313 PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372
           P    +     +S  +T +  E  N+E++            + RL++AV+V+  +     
Sbjct: 303 PEGDAKGGTGGKS--STSETRETVNFEVSQTQRELMRQPGAIRRLTVAVLVDGIKTVADD 360

Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDIL 432
           G    + + +  LA + ++V +A G++  RGD +T+ S+ F       +GT  ++    L
Sbjct: 361 GTVGWEPRPEEELAVLRELVGSAVGLDESRGDRLTLRSLAF--ETPPEAGT--LAETGFL 416

Query: 433 SRHFATVINALVFL-VGTLLVTFLGLHALR 461
           SR  A  + +L+ + V  L+   LGL  +R
Sbjct: 417 SRLGAFDLMSLIQIGVLALVALILGLFVVR 446


>gi|260574387|ref|ZP_05842391.1| flagellar M-ring protein FliF [Rhodobacter sp. SW2]
 gi|259023283|gb|EEW26575.1| flagellar M-ring protein FliF [Rhodobacter sp. SW2]
          Length = 533

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 120/417 (28%), Positives = 206/417 (49%), Gaps = 20/417 (4%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           R RI+++ + I + + +   +R   N+P    LY  L+      +  AL +  + + +  
Sbjct: 14  RRRIIVIGATIAMFLAVLGLSRM-ANTPSMALLYAGLDNRAAGEVVAALDQRGVAYEV-- 70

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
            G SI V  +     R+ LA +GLP+  + +GYEL D ++ FG TS M +    RA EGE
Sbjct: 71  KGDSILVDVTQRDSLRMTLATEGLPTMGA-AGYELLDGLSGFGTTSQMFDAAYWRAKEGE 129

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAA 198
           +ARTI +   I AARVHI       FR+      +  +           A+A++HL+AAA
Sbjct: 130 LARTILANPQIRAARVHIAQAPAQPFRRDVLATASVTVTTTTGSLPPLQAKALKHLIAAA 189

Query: 199 VPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNF 258
           V  +   DV+V+D+ G L+ A + +  + G      Q    E+  N+ + LAA +G    
Sbjct: 190 VAGMQPEDVSVIDTVGGLIMAAD-DNTLTGNG---GQDRAAELRTNVERLLAARVGPGKS 245

Query: 259 RSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA--QRSETSQPESAVTVEQNMPHVS 316
              V  ++  + + I E  +DP  +V     +S DA  + S  ++P   VTV  N+P  +
Sbjct: 246 VVEVSVDVVTERESITERKFDPQGRVP----ISTDATEKTSSATEPSGDVTVASNLPQGN 301

Query: 317 DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA 376
                  +S   T +  E +N+E++  S         + +LS+AV+V+  ++T   G  +
Sbjct: 302 AAAGGNGQS--QTSETRELTNFEVSETSRELLRVPGAVRKLSVAVLVDGLQVTAADGTIS 359

Query: 377 DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVS--FMDI 431
            Q + +  LA + ++V++A G++  RGD +T+ S+ F    L  +GT+  +  F DI
Sbjct: 360 WQPRPEEELAVLRELVASAVGLDETRGDVLTLKSLAF--EPLAEAGTLAEASMFADI 414


>gi|317181691|dbj|BAJ59475.1| flagellar MS-ring protein [Helicobacter pylori F57]
          Length = 567

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 122/410 (29%), Positives = 205/410 (50%), Gaps = 30/410 (7%)

Query: 23  LILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           LI A V++  +++F+    F    +    Y  L+ +L+ SD   I   L +  I ++I  
Sbjct: 25  LIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFERLDSSDNALILQHLQQNQIPYKILK 84

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           +  +I +P   V + RI LA+QG+P +S   G+E+FD    FG T F Q I  +RA+EGE
Sbjct: 85  D-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFD-TKDFGATDFDQNIKLIRAIEGE 141

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195
           ++RTI+S++ I+ A VHI +P    F      P+ASVM++ + P +  S      I++L+
Sbjct: 142 LSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLK-LKPDMKLSPTQILGIKNLI 200

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAF 252
           AAAVP L   +V +++  G+ +   ++  N   +  + L   Q  ++ +E  I   LA  
Sbjct: 201 AAAVPKLTTENVKIVNENGESIGEGDILENSKELALEQLRYKQNFENILENKIVNILAPI 260

Query: 253 LGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311
           +G  N   A V AE +   ++  +  +DP++ V     L +  + +   Q      V  N
Sbjct: 261 VGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGTPKKQVGGVPGVVSN 320

Query: 312 MPHV---SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGR 367
           +  V    D K P     E  +K +  +NYE+  K+I+     +  L RL+ AVVV+ G+
Sbjct: 321 IGPVQGLKDNKEP-----EKYEKSQNTTNYEVG-KTISEIKGEFGTLVRLNAAVVVD-GK 373

Query: 368 LTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
               L   A+  +     D  L +IN +V  A G N  RGD + +++ +F
Sbjct: 374 YKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDDVAVSNFEF 423


>gi|217031571|ref|ZP_03437076.1| hypothetical protein HPB128_21g129 [Helicobacter pylori B128]
 gi|216946771|gb|EEC25367.1| hypothetical protein HPB128_21g129 [Helicobacter pylori B128]
          Length = 567

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 121/410 (29%), Positives = 205/410 (50%), Gaps = 30/410 (7%)

Query: 23  LILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           LI A V++  +++F+    F    +    Y  L+  L+ SD   I   L +  I +++S 
Sbjct: 25  LIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEGLDSSDNALILQHLQQNQIPYKVSK 84

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           +  +I +P   V + RI LA+QG+P +S   G+E+FD    FG T F Q I  +RA+EGE
Sbjct: 85  D-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFD-TKDFGATDFDQNIKLIRAIEGE 141

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195
           ++RTI+S++ I+ A VHI +P    F      P+ASVM++ + P +  S      I++L+
Sbjct: 142 LSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLK-LKPDMKLSPTQILGIKNLI 200

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAF 252
           AAAVP L + +V +++  G+ +   ++  N   +  + L   Q  ++ +E  I   LA  
Sbjct: 201 AAAVPKLTIDNVKIVNENGESIGEGDILENSKELALEQLHYKQNFENILENKIVNILAPI 260

Query: 253 LGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311
           +G  N   A V AE +   ++  +  +DP++ V     L +  + +   Q      V  N
Sbjct: 261 VGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGTPKKQVGGVPGVVSN 320

Query: 312 MPHV---SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGR 367
           +  V    D K P     E  +K +  +NYE+  K+I+     +  L RL+ AVVV+ G+
Sbjct: 321 IGPVQGLKDNKEP-----EKYEKSQNTTNYEVG-KTISEIKGEFGTLVRLNAAVVVD-GK 373

Query: 368 LTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
               L    +  +     D  L +IN +V  A G N  RGD + +++ +F
Sbjct: 374 YKIALKDGTNTLEYEPLSDESLQKINALVKQAIGYNQNRGDDVAVSNFEF 423


>gi|32490809|ref|NP_871063.1| hypothetical protein WGLp060 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166015|dbj|BAC24206.1| fliF [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 569

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 151/580 (26%), Positives = 264/580 (45%), Gaps = 96/580 (16%)

Query: 24  ILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSI 83
           +L S  ++ I L +    ++ S +Y  LY  +   D   I   LS  NI ++ S N  SI
Sbjct: 32  LLLSFGVIGIALSIVLITWLQSSNYQVLYTNISDQDSGDIISELSTLNIPYKFSKNNGSI 91

Query: 84  SVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTI 143
            VP   + + R  LA + LP   S  G+E+ D  +SFG++ F + I   RALEGEIARTI
Sbjct: 92  MVPEDKIYETRFLLAQKNLPKGGS-IGFEILDN-SSFGISQFNENINYQRALEGEIARTI 149

Query: 144 QSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAA 198
           ++I+ I +ARVHI +P    F +     +AS+ +     R ++ +     +AIR LV+  
Sbjct: 150 ETINSIKSARVHIAIPKSSVFIRDNKPSSASITLGLHAGRTLDKN---EIQAIRWLVSGT 206

Query: 199 VPNLDMGDVTVLDSTGKLLTA---NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255
           VPNL + ++ ++D+ GKLL     N  ++NI    L  ++ I+ E    I + L   +G 
Sbjct: 207 VPNLPVSNIVLVDNYGKLLAYPDNNNDDKNIT--QLQYIKDIELEYRRRIEEILIPIVGF 264

Query: 256 DNFRSAVVAELNM-DTQQIREIVYDPDSKV-ERSIRLSK---------------DAQRSE 298
           +N ++ V A+++   T+Q  E  + P++   E SIR  +                A  ++
Sbjct: 265 NNVKAEVTAQIDFTKTEQTSE-KHKPNTNPNEMSIRSQQITENNNFSQVAEGVPGALSNQ 323

Query: 299 TSQPESAVTVEQN--------------MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKS 344
            SQ  SA   E+N                + S  KV  P +++    KE+  NYEI+   
Sbjct: 324 PSQVSSANIDEENEEIDKDAESEKEIDKKNNSSSKVEKPNNVQ----KEKIINYEIDR-- 377

Query: 345 IATTHDNYK---LERLSIAVVVNKGRLTEVLGRSADQGKIDSY-LAEINKIVSAATGINS 400
              TH  +    L+RLS+AVV+NK        +  +Q   +   + EI  ++    G + 
Sbjct: 378 -TLTHSKFSTGILKRLSVAVVINKKE-----DQKGNQINFEEKEMQEITSLIKEVMGYSE 431

Query: 401 RRGDTITITSMDFL--ENQLFN-----SGTVQVSFMDILSRHFATVINALVFLVGTLLVT 453
            R DT+ + + +F+  ++++FN     +  +Q  F+ ++    +    AL++L     + 
Sbjct: 432 ERNDTLDVVNANFVNKKDEIFNIPFWENIRIQNIFISLIKYILSF---ALMWLFINKFIK 488

Query: 454 FLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR 513
                   +L N  D K  +    SI++    ++ +   +   +NI++         ++ 
Sbjct: 489 IWKTSEQNQLKNKIDKKSFQEKNNSIVNEK--NNEINKKINEEENISI---------YTE 537

Query: 514 NLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
           N   ++     KQ  L             AKI+ +W + E
Sbjct: 538 NSIKKLQEIADKQPKL------------VAKIISQWIKKE 565


>gi|317013789|gb|ADU81225.1| flagellar MS-ring protein [Helicobacter pylori Gambia94/24]
          Length = 567

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 121/410 (29%), Positives = 206/410 (50%), Gaps = 30/410 (7%)

Query: 23  LILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           LI A V++  +++F+    F    +    Y  L+ +L+ SD   I   L +  I +++  
Sbjct: 25  LIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFERLDSSDNALILQHLQQNQIPYKVLK 84

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           +  +I +P   V + RI LA+QG+P +S   G+E+FD    FG T F Q I  +RA+EGE
Sbjct: 85  D-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFD-TKDFGATDFDQNIKLIRAIEGE 141

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195
           ++RTI+S++ I+ A VHI +P    F      P+ASVM++ + P +  S      I++L+
Sbjct: 142 LSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLK-LKPDMKLSPTQILGIKNLI 200

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAF 252
           AAAVP L + +V +++  G+ +   ++  N   +  + L   Q  ++ +E  I   LA  
Sbjct: 201 AAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLRYKQNFENILENKIVNILAPI 260

Query: 253 LGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311
           +G  N   A V AE +   ++  +  +DP++ V     L +  + +   Q      V  N
Sbjct: 261 VGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGASKKQVGGVPGVVSN 320

Query: 312 MPHV---SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGR 367
           +  V    D K P     E  +K +  +NYE+  K+I+     +  L RL+ AVVV+ G+
Sbjct: 321 IGPVQGLKDNKEP-----EKYEKSQNTTNYEVG-KTISEIKGEFGTLVRLNAAVVVD-GK 373

Query: 368 LTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
               L   A+  +     D  L +IN +V  A G N  RGD + +++ +F
Sbjct: 374 YKIALKDGANALEYEPLSDESLKKINALVKQAIGYNQNRGDDVAVSNFEF 423


>gi|315586339|gb|ADU40720.1| flagellar M-ring protein FliF [Helicobacter pylori 35A]
          Length = 567

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 122/410 (29%), Positives = 205/410 (50%), Gaps = 30/410 (7%)

Query: 23  LILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           LI A V++  +++F+    F    +    Y  L+ +L+ SD   I   L +  I ++I  
Sbjct: 25  LIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFERLDSSDNALILQHLQQNQIPYKILK 84

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           +  +I +P   V + RI LA+QG+P +S   G+E+FD    FG T F Q I  +RA+EGE
Sbjct: 85  D-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFD-TKDFGATDFDQNIKLIRAIEGE 141

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195
           ++RTI+S++ I+ A VHI +P    F      P+ASVM++ + P +  S      I++L+
Sbjct: 142 LSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLK-LKPDMKLSPTQILGIKNLI 200

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAF 252
           AAAVP L   +V +++  G+ +   ++  N   +  + L   Q  ++ +E  I   LA  
Sbjct: 201 AAAVPKLTTENVKIVNENGESIGEGDILENSKELALEQLRYKQNFENILENKIVNILAPI 260

Query: 253 LGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311
           +G  N   A V AE +   ++  +  +DP++ V     L +  + +   Q      V  N
Sbjct: 261 VGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSN 320

Query: 312 MPHV---SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGR 367
           +  V    D K P     E  +K +  +NYE+  K+I+     +  L RL+ AVVV+ G+
Sbjct: 321 IGPVQGLKDNKEP-----EKYEKSQNTTNYEVG-KTISEIKGEFGTLVRLNAAVVVD-GK 373

Query: 368 LTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
               L   A+  +     D  L +IN +V  A G N  RGD + +++ +F
Sbjct: 374 YKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDDVAVSNFEF 423


>gi|317008990|gb|ADU79570.1| flagellar MS-ring protein [Helicobacter pylori India7]
          Length = 567

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 128/431 (29%), Positives = 214/431 (49%), Gaps = 33/431 (7%)

Query: 3   ILDQLLQFF-----KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEV 57
           +L +++ FF     K   +L  T +LI A  +LV ++L+           Y  L+  L+ 
Sbjct: 6   LLQRIVDFFIKLNKKQKIALIATGVLITA--LLVFLLLYPFKEKDYAQGGYGVLFEGLDS 63

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
           SD   I   L +  I +++S +  +I +P   V + RI LA+QG+P +S   G+E+FD  
Sbjct: 64  SDNALILQHLQQNQIPYKVSKD-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFD-T 120

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
             FG T F Q I  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+ASVM+
Sbjct: 121 KDFGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180

Query: 178 RAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSL 231
           + + P +  S      I++L+AAAVP L   +V +++  G+ +   ++  N   +  + L
Sbjct: 181 K-LKPDMKLSPTQILGIKNLIAAAVPKLTTDNVKIVNENGESIGEGDILENSKELALEQL 239

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRL 290
              Q  ++ +E  I   LA  +G  N   A V AE +   ++  +  +DP++ V     L
Sbjct: 240 HYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNL 299

Query: 291 SKDAQRSETSQPESAVTVEQNMPHV---SDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
            +  + +   Q      V  N+  V    D K P     E  +K +  +NYE+  K+I+ 
Sbjct: 300 EEKKEGASKKQVGGVPGVVSNIGPVQGLKDNKEP-----EKYEKSQNTTNYEVG-KTISE 353

Query: 348 THDNY-KLERLSIAVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRR 402
               +  L RL+ AVVV+ G+    L   A+  +     D  L +IN +V  A G N  R
Sbjct: 354 IKGEFGTLVRLNAAVVVD-GKYKIALKDGANTLEYEPLSDESLQKINALVKQAIGYNQNR 412

Query: 403 GDTITITSMDF 413
           GD + +++ +F
Sbjct: 413 GDDVAVSNFEF 423


>gi|261837785|gb|ACX97551.1| flagellar basal-body M-ring protein [Helicobacter pylori 51]
          Length = 567

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 122/410 (29%), Positives = 205/410 (50%), Gaps = 30/410 (7%)

Query: 23  LILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           LI A V++  +++F+    F    +    Y  L+ +L+ SD   I   L +  I ++I  
Sbjct: 25  LIAAGVLITTLLVFLLLYPFKEKDYAQGGYGVLFERLDSSDNALILQHLQQNQIPYKILK 84

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           +  +I +P   V + RI LA+QG+P +S   G+E+FD    FG T F Q I  +RA+EGE
Sbjct: 85  D-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFD-TKDFGATDFDQNIKLIRAIEGE 141

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195
           ++RTI+S++ I+ A VHI +P    F      P+ASVM++ + P +  S      I++L+
Sbjct: 142 LSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLK-LKPDMKLSPTQILGIKNLI 200

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAF 252
           AAAVP L   +V +++  G+ +   ++  N   +  + L   Q  ++ +E  I   LA  
Sbjct: 201 AAAVPKLTTENVKIVNENGESIGEGDILENSKELALEQLRYKQNFENILENKIVNILAPI 260

Query: 253 LGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311
           +G  N   A V AE +   ++  +  +DP++ V     L +  + +   Q      V  N
Sbjct: 261 VGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSN 320

Query: 312 MPHV---SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGR 367
           +  V    D K P     E  +K +  +NYE+  K+I+     +  L RL+ AVVV+ G+
Sbjct: 321 IGPVQGLKDNKEP-----EKYEKSQNTTNYEVG-KTISEIKGEFGTLVRLNAAVVVD-GK 373

Query: 368 LTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
               L   A+  +     D  L +IN +V  A G N  RGD + +++ +F
Sbjct: 374 YKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDDVAVSNFEF 423


>gi|217033359|ref|ZP_03438790.1| hypothetical protein HP9810_9g112 [Helicobacter pylori 98-10]
 gi|216944300|gb|EEC23725.1| hypothetical protein HP9810_9g112 [Helicobacter pylori 98-10]
 gi|317177162|dbj|BAJ54951.1| flagellar MS-ring protein [Helicobacter pylori F16]
 gi|317179256|dbj|BAJ57044.1| flagellar MS-ring protein [Helicobacter pylori F30]
 gi|332673195|gb|AEE70012.1| flagellar M-ring protein FliF [Helicobacter pylori 83]
          Length = 567

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 122/410 (29%), Positives = 205/410 (50%), Gaps = 30/410 (7%)

Query: 23  LILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           LI A V++  +++F+    F    +    Y  L+ +L+ SD   I   L +  I ++I  
Sbjct: 25  LIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFERLDSSDNALILQHLQQNQIPYKILK 84

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           +  +I +P   V + RI LA+QG+P +S   G+E+FD    FG T F Q I  +RA+EGE
Sbjct: 85  D-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFD-TKDFGATDFDQNIKLIRAIEGE 141

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195
           ++RTI+S++ I+ A VHI +P    F      P+ASVM++ + P +  S      I++L+
Sbjct: 142 LSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLK-LKPDMKLSPTQILGIKNLI 200

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAF 252
           AAAVP L   +V +++  G+ +   ++  N   +  + L   Q  ++ +E  I   LA  
Sbjct: 201 AAAVPKLTTENVKIVNENGESIGEGDILENSKELALEQLRYKQNFENILENKIVNILAPI 260

Query: 253 LGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311
           +G  N   A V AE +   ++  +  +DP++ V     L +  + +   Q      V  N
Sbjct: 261 VGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSN 320

Query: 312 MPHV---SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGR 367
           +  V    D K P     E  +K +  +NYE+  K+I+     +  L RL+ AVVV+ G+
Sbjct: 321 IGPVQGLKDNKEP-----EKYEKSQNTTNYEVG-KTISEIKGEFGTLVRLNAAVVVD-GK 373

Query: 368 LTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
               L   A+  +     D  L +IN +V  A G N  RGD + +++ +F
Sbjct: 374 YKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDDVAVSNFEF 423


>gi|308182520|ref|YP_003926647.1| flagellar MS-ring protein [Helicobacter pylori PeCan4]
 gi|308064705|gb|ADO06597.1| flagellar MS-ring protein [Helicobacter pylori PeCan4]
          Length = 567

 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 122/410 (29%), Positives = 205/410 (50%), Gaps = 30/410 (7%)

Query: 23  LILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           LI A V++  +++F+    F    +    Y  L+  L+ SD   I   L +  I +++S 
Sbjct: 25  LIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFEGLDSSDNALILQHLQQNQIPYKVSK 84

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           +  +I +P   V + RI LA+QG+P +S   G+E+FD    FG T F Q I  +RA+EGE
Sbjct: 85  D-DTILIPRDKVYEERITLASQGIPKTSK-VGFEIFD-TKDFGATDFDQNIKLIRAIEGE 141

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195
           ++RTI+S++ I+ A VHI +P    F      P+ASVM++ + P +  S      I++L+
Sbjct: 142 LSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLK-LKPDMKLSPTQILGIKNLI 200

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAF 252
           AAAVP L   +V +++  G+ +   ++  N   +  + L   Q  ++ +E  I   LA  
Sbjct: 201 AAAVPKLTTENVKIVNENGESIGEGDILENSKELALEQLRYKQNFENILENKIVNILAPI 260

Query: 253 LGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311
           +G  N   A V AE +   ++  +  +DP++ V     L +  + +   Q      V  N
Sbjct: 261 VGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSN 320

Query: 312 MPHV---SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGR 367
           +  V    D K P     E  +K +  +NYE+  K+I+     +  L RL+ AVVV+ G+
Sbjct: 321 IGPVQGLKDNKEP-----EKYEKSQNTTNYEVG-KTISEIKGEFGTLVRLNAAVVVD-GK 373

Query: 368 LTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
               L   A+  +     D  L +IN +V  A G N  RGD + +++ +F
Sbjct: 374 YKIALKDGANTLEYEPLSDESLQKINALVKQAIGYNQNRGDDVAVSNFEF 423


>gi|225181611|ref|ZP_03735052.1| flagellar M-ring protein FliF [Dethiobacter alkaliphilus AHT 1]
 gi|225167719|gb|EEG76529.1| flagellar M-ring protein FliF [Dethiobacter alkaliphilus AHT 1]
          Length = 519

 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 115/406 (28%), Positives = 199/406 (49%), Gaps = 40/406 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           +++A  I+V +     A   +  P    L+  LE  D  RI+  L E N+ + + D G +
Sbjct: 31  IVMAVAIIVTLFFLGQA---IARPRMALLFTGLEPVDAGRIAARLQEMNVQYSLDDEGRT 87

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I V   MV   RI LA+    +    SG+ELFD+ N  G T F + +  +RAL+ E+ RT
Sbjct: 88  ILVRQDMVDDVRIQLASDESLNIGGGSGFELFDQTN-LGATDFNRRMDYLRALQEELRRT 146

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIR---HLVAAAV 199
           I  +  +  ARVH+ +P+   F +  A P+AS+++ A++P     +E +R   HLVA +V
Sbjct: 147 IVRLDEVEQARVHLALPEPSVFIQDSAEPSASIVL-ALSPVSRLDSERVRGIVHLVAGSV 205

Query: 200 PNLDMGDVTVLDSTGKLLT--------ANEMERNILGKSLSIVQAIQHEIEMNINKALAA 251
            N+   +VTV+D+TG +L+          ++    + + L I ++ + E+E  +   L  
Sbjct: 206 ENMRPENVTVIDTTGNILSDQLDNLDPTKQLAEATMAQ-LDIKRSFEKELERRVQVMLER 264

Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311
            LG     + + A+L+ D+ +   I +D +  V RS  ++++        P  A   + N
Sbjct: 265 ILGPGQAIAMITADLDFDSHESTVITFDSEG-VPRSQTITEEYFEGAGVVPGEA-GADSN 322

Query: 312 MPHVSDRKVPLPRSLENT--DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK--GR 367
           +P       P      ++  ++ +E +NYEIN  +        KL +L+ +VVVN   G+
Sbjct: 323 IP-----GYPWVGGTGDSTYERYDETTNYEINETTERQIRAPGKLVQLNASVVVNDNGGQ 377

Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           L++   R            +I++ V AA G    RGD+I++  M F
Sbjct: 378 LSQAQVR------------QISEAVEAALGYQVGRGDSISVQGMSF 411


>gi|261821173|ref|YP_003259279.1| flagellar MS-ring protein [Pectobacterium wasabiae WPP163]
 gi|261605186|gb|ACX87672.1| flagellar M-ring protein FliF [Pectobacterium wasabiae WPP163]
          Length = 569

 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 119/466 (25%), Positives = 220/466 (47%), Gaps = 59/466 (12%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  LY  +   D   I   L++ NI +R ++NG +I +P++ V + R+ LA  
Sbjct: 46  LWAKGPDYRVLYSNINDRDGGAIVSELTKLNIPYRFAENGGAIMIPAANVYETRLRLAQL 105

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL DK   FG++ F ++I   RALEGE++RTI+++  +  ARVH+ +P 
Sbjct: 106 GLPKGGA-VGFELLDK-EKFGISQFSEQINYQRALEGELSRTIETLGPVQNARVHLAIPK 163

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    P++SV +     RA++     S   I ++V+++V  L   +VTV+D TG+
Sbjct: 164 PSLFVREQKSPSSSVTLTLQPGRALDEGQINS---IVYMVSSSVAGLPPDNVTVVDQTGR 220

Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT A    R++    L     ++   +  I   +A  +G+ N  + V A+++   ++  
Sbjct: 221 LLTQAGGSGRDMNAAQLKYSNEVEAMYQRRIESIIAPMVGMGNVHAQVTAQIDFSAREQT 280

Query: 275 EIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----------------ES 304
           +  Y P+   +++   S+   +SE              T+QP                  
Sbjct: 281 DEQYQPNQPPDKAAVRSQQTSQSEQKGGPNVGGVPGALTNQPAPAPTAPIATPPNNANNQ 340

Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTD-KKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
           A   +QN  +    +      ++ ++ + +  +NYE++   + T H    ++RLS AV+V
Sbjct: 341 AGAGQQNQNNAGGTQANANAVIQTSNVRNDATTNYEVDKTILHTKHSTGGVKRLSAAVIV 400

Query: 364 N---KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           N    G   + +  + DQ      + +I  +   A G ++ RGDT+ + +  F++N    
Sbjct: 401 NYQPPGEDGKPVALTEDQ------IKQIETVAREAMGFSTERGDTLNVVNTPFMDN---T 451

Query: 421 SGTVQVSFMDILSRHFATVINA----LVFLVGTLLVTFLGLHALRR 462
            G+ ++ F    +  F  ++ A    LV +V  +L   L    LR+
Sbjct: 452 EGSSELPFWQKQA-FFDLLMEAGRWLLVLIVAWILWRKLVRPQLRK 496


>gi|218778522|ref|YP_002429840.1| flagellar M-ring protein FliF [Desulfatibacillum alkenivorans
           AK-01]
 gi|218759906|gb|ACL02372.1| Flagellar M-ring protein FliF [Desulfatibacillum alkenivorans
           AK-01]
          Length = 520

 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 130/426 (30%), Positives = 208/426 (48%), Gaps = 31/426 (7%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +L ++ Q F+S T  GR   L++    LV    F A  F+  +P Y  L+ +L   D  +
Sbjct: 4   LLQRIAQIFQSMTP-GRRIALVVVLAGLV--AAFAAMFFWAGTPEYQVLFSQLSQEDAGK 60

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L E  I ++++  G+++ VP   V + R+ LAA+GLP   S  G+E+FD+ +SF  
Sbjct: 61  IVSKLQEQRIPYQLAQGGTAVLVPGEQVYELRLSLAAEGLPKGGS-VGFEIFDE-SSFST 118

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T F+Q++   RAL+GE++RTI   + + +A+V IV      F +  +  TASV++  + P
Sbjct: 119 TEFVQKLNYQRALQGELSRTIGQFNEVRSAKVLIVPAKDTVFVETTSPATASVLLDLVRP 178

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL--TANEMERNILGKS--LSIVQAIQ 238
                   I +LVA AV  L    VTV+D+TGK+    A E +   L  +  L + Q  +
Sbjct: 179 LSSGQVSGIVNLVANAVEGLGTEQVTVVDTTGKVWFKGAGEGDDAALAANNRLEMQQQTE 238

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
             +  ++   L   +G       V AE++ D ++  E  YDPDS V RS +   +    E
Sbjct: 239 DRLAKHVQSMLEQIVGPGKAIVRVRAEMDFDQEEYSEETYDPDSVVVRSQQKRTEDTVKE 298

Query: 299 TSQPESA-VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
           T  P  A V    N P ++     L +S   T K++E +N EIN      T     + RL
Sbjct: 299 T--PGGATVNTMNNQPGMAS-GAALGQS--RTQKQDEVTNNEINRVQRRVTKVLPTITRL 353

Query: 358 SIAVVVNKGRLT----------EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
           S+A V++    T          + + R+A++      L +   IV  A G +  R D +T
Sbjct: 354 SVAAVLDGTYKTVENQDGVSTAQFVPRTAEE------LKQFEGIVKNAMGYSEDREDQVT 407

Query: 408 ITSMDF 413
           ++S  F
Sbjct: 408 VSSFQF 413


>gi|33592502|ref|NP_880146.1| flagellar MS-ring protein [Bordetella pertussis Tohama I]
 gi|33572148|emb|CAE41692.1| flagellar M-ring protein FliF [Bordetella pertussis Tohama I]
 gi|332381920|gb|AEE66767.1| flagellar MS-ring protein [Bordetella pertussis CS]
          Length = 558

 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 125/453 (27%), Positives = 202/453 (44%), Gaps = 52/453 (11%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  L+  L+  D   I  AL + N+ +R SDNGS++ VP+  V   R+ LA+Q
Sbjct: 45  MWSREPDYKVLFSNLDDRDGGAIVSALDQMNVPYRFSDNGSALLVPAERVYDTRMQLASQ 104

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   S  G+EL D    FG + F ++I   R LEGE+AR+I+++  +  ARVH+ MP 
Sbjct: 105 GLPRGGS-VGFELLDNTR-FGASQFAEQINYQRGLEGELARSIEAMHTVQHARVHLAMPR 162

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    PTASV++          A+  A+  LVA++VP L   +V+++D  G+LL+
Sbjct: 163 QSLFVRDRQAPTASVLLNLYPGRSLSDAQVSAVAWLVASSVPELTAENVSIVDQNGRLLS 222

Query: 219 ANEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
           A   E R +    L  V+ ++      I   L   +G  N  +   AE++   ++    V
Sbjct: 223 APLGEGRGMDADQLRFVREMEQRTVERILTILNPLVGPGNVHAQASAEIDFARREETSEV 282

Query: 278 YDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPHVSDRKVPL--PRSL------ 326
           Y P+ +  ++   S+    S  + P +A  V     N P  ++ + P+  P ++      
Sbjct: 283 YRPNQEPGQAAVRSQQTSDSRQTGPNAAQGVPGALSNQPP-ANAQAPIVNPPAVAGTPQQ 341

Query: 327 ------------------------ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
                                    + D+ +   NYE++            L+RLS+AVV
Sbjct: 342 QQQQRAQQQAAGATTTQTQQGAAAPSNDRHDATINYEVDRTISHVKQPVGMLKRLSVAVV 401

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           VN   L    G S  +      L ++  +V  A G +  RGD++ +       N  FN  
Sbjct: 402 VNY--LPNKEGES--EALPPEELNKLTNLVREAMGYSEARGDSLNLV------NSQFNDT 451

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455
            V V          A +  AL +L G +L  +L
Sbjct: 452 PVAVPLWRD-PELIAMIKTALGWLFGLILAFWL 483


>gi|307637039|gb|ADN79489.1| flagellar M-ring protein [Helicobacter pylori 908]
          Length = 567

 Score =  137 bits (346), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 121/410 (29%), Positives = 205/410 (50%), Gaps = 30/410 (7%)

Query: 23  LILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           LI A V++  +++F+    F    +    Y  L+ +L+ SD   I   L +  I +++  
Sbjct: 25  LIAAEVLITALLVFLLLYPFKEKDYAQGGYGVLFERLDSSDNALILQHLQQNQIPYKVLK 84

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           +  +I VP   V + RI LA+QG+P +S   G+E+FD    FG T F Q I  +RA+EGE
Sbjct: 85  D-DTILVPKDKVYEERITLASQGIPKTSK-VGFEIFD-TKDFGATDFDQNIKLIRAIEGE 141

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195
           ++RTI+S++ I+ A VHI +P    F      P+ASVM++ + P +  S      I++L+
Sbjct: 142 LSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLK-LKPDMKLSPTQILGIKNLI 200

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAF 252
           AAAVP L + +V +++  G+ +   ++  N   +  + L   Q  ++ +E  I   LA  
Sbjct: 201 AAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLRYKQNFENILENKIVNILAPI 260

Query: 253 LGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311
           +G  N   A V AE +   ++  +  +DP++ V     L +  + +   Q      V  N
Sbjct: 261 VGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSN 320

Query: 312 MPHV---SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGR 367
           +  V    D K P     E  +K +  +NYE+  K+I+     +  L RL+ AVVV+ G+
Sbjct: 321 IGPVQGLKDNKEP-----EKYEKSQNTTNYEVG-KTISEIKGEFGTLVRLNAAVVVD-GK 373

Query: 368 LTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
                   A+  +     D  L +IN +V  A G N  RGD + +++ +F
Sbjct: 374 YKIAFKDGANALEYEPLSDESLKKINALVKQAIGYNQNRGDDVAVSNFEF 423


>gi|255985845|ref|YP_354394.3| flagellar MS-ring protein [Rhodobacter sphaeroides 2.4.1]
 gi|77389308|gb|ABA80493.1| putative flagellar M-ring protein [Rhodobacter sphaeroides 2.4.1]
          Length = 509

 Score =  137 bits (346), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 122/426 (28%), Positives = 209/426 (49%), Gaps = 26/426 (6%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
               P    LY  L+      +  AL      + +   G S+ V ++   + R+ LA +G
Sbjct: 17  LAGRPPMALLYAGLQGPAAGEVVTALEAQGAAYEV--RGDSVYVEAARRDEIRMKLAGEG 74

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP++ + +GYEL D ++ FG TS M +   +RA EGE+ARTI +   + AARVHI  P  
Sbjct: 75  LPATGA-AGYELLDGLSGFGTTSQMFDAAYLRAKEGELARTILASPQVKAARVHIAQPAA 133

Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN 220
             FR+   RPTASV +     +V    A A +HLVA+AV  L   DV+V+DS   L+ + 
Sbjct: 134 QPFRRE-QRPTASVTVTTSGGAVTADQARAFKHLVASAVAGLQPEDVSVIDSVMGLIRSG 192

Query: 221 EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV--- 277
           + E++    + +  ++   E+  N+ + L A +G        V E+++D +  RE +   
Sbjct: 193 D-EKD---GATAAGESRAAELRSNVERLLEARVGPGR----AVVEVSVDVETARESIVEK 244

Query: 278 -YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQS 336
            +DP  +V   I      + S +++P   VTV  N+P    +     +S  +T +  E  
Sbjct: 245 SFDPKGRV--PISSETQEKSSNSTEPSPDVTVASNLPEGDAKGGTGGKS--STSETREMV 300

Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT 396
           N+E++            + RL++AV+V+  +     G    + + +  LA + ++V +A 
Sbjct: 301 NFEVSQTQRELMRQPGAIRRLTVAVLVDGIKTVADDGTVGWEPRPEEELAVLRELVGSAV 360

Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFL-VGTLLVTFL 455
           G++  RGD +T+ S+ F       +GT  ++    LSR  A  + +L+ + V  L+   L
Sbjct: 361 GLDESRGDRLTLRSLAF--ETPPEAGT--LAETGFLSRLGAFDLMSLIQIGVLALVALIL 416

Query: 456 GLHALR 461
           GL  +R
Sbjct: 417 GLFVVR 422


>gi|325995631|gb|ADZ51036.1| Flagellar M-ring protein [Helicobacter pylori 2018]
 gi|325997227|gb|ADZ49435.1| Flagellar MS-ring protein [Helicobacter pylori 2017]
          Length = 567

 Score =  137 bits (346), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 121/410 (29%), Positives = 205/410 (50%), Gaps = 30/410 (7%)

Query: 23  LILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           LI A V++  +++F+    F    +    Y  L+ +L+ SD   I   L +  I +++  
Sbjct: 25  LIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFERLDSSDNALILQHLQQNQIPYKVLK 84

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           +  +I VP   V + RI LA+QG+P +S   G+E+FD    FG T F Q I  +RA+EGE
Sbjct: 85  D-DTILVPKDKVYEERITLASQGIPKTSK-VGFEIFD-TKDFGATDFDQNIKLIRAIEGE 141

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195
           ++RTI+S++ I+ A VHI +P    F      P+ASVM++ + P +  S      I++L+
Sbjct: 142 LSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLK-LKPDMKLSPTQILGIKNLI 200

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAF 252
           AAAVP L + +V +++  G+ +   ++  N   +  + L   Q  ++ +E  I   LA  
Sbjct: 201 AAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLRYKQNFENILENKIVNILAPI 260

Query: 253 LGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311
           +G  N   A V AE +   ++  +  +DP++ V     L +  + +   Q      V  N
Sbjct: 261 VGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSN 320

Query: 312 MPHV---SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGR 367
           +  V    D K P     E  +K +  +NYE+  K+I+     +  L RL+ AVVV+ G+
Sbjct: 321 IGPVQGLKDNKEP-----EKYEKSQNTTNYEVG-KTISEIKGEFGTLVRLNAAVVVD-GK 373

Query: 368 LTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
                   A+  +     D  L +IN +V  A G N  RGD + +++ +F
Sbjct: 374 YKIAFKDGANALEYEPLSDESLKKINALVKQAIGYNQNRGDDVAVSNFEF 423


>gi|15644979|ref|NP_207149.1| flagellar MS-ring protein [Helicobacter pylori 26695]
 gi|2313452|gb|AAD07419.1| flagellar basal-body M-ring protein (fliF) [Helicobacter pylori
           26695]
          Length = 567

 Score =  137 bits (346), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 121/410 (29%), Positives = 205/410 (50%), Gaps = 30/410 (7%)

Query: 23  LILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           LI A V++  +++F+    F    +    Y  L+  L+ SD   I   L +  I +++S 
Sbjct: 25  LIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEGLDSSDNALILQHLQQNQIPYKVSK 84

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           +  +I +P   V + RI LA+QG+P +S   G+E+FD    FG T F Q I  +RA+EGE
Sbjct: 85  D-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFD-TKDFGATDFDQNIKLIRAIEGE 141

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195
           ++RTI+S++ I+ A VHI +P    F      P+ASVM++ + P +  S      I++L+
Sbjct: 142 LSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLK-LKPDMKLSPTQILGIKNLI 200

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAF 252
           AAAVP L + +V +++  G+ +   ++  N   +  + L   Q  ++ +E  I   LA  
Sbjct: 201 AAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLHYKQNFENILENKIVNILAPI 260

Query: 253 LGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311
           +G  N   A V AE +   ++  +  +DP++ V     L +  + +   Q      V  N
Sbjct: 261 VGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGASKKQVGGVPGVVSN 320

Query: 312 MPHV---SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGR 367
           +  V    D K P     E  +K +  +NYE+  K+I+     +  L RL+ AVVV+ G+
Sbjct: 321 IGPVQGLKDNKEP-----EKYEKSQNTTNYEVG-KTISEIKGEFGTLVRLNAAVVVD-GK 373

Query: 368 LTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
               L    +  +     D  L +IN +V  A G N  RGD + +++ +F
Sbjct: 374 YKIALKDGVNTLEYEPLSDESLQKINALVKQAIGYNQNRGDDVAVSNFEF 423


>gi|288942636|ref|YP_003444876.1| flagellar M-ring protein FliF [Allochromatium vinosum DSM 180]
 gi|288898008|gb|ADC63844.1| flagellar M-ring protein FliF [Allochromatium vinosum DSM 180]
          Length = 577

 Score =  137 bits (345), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 105/397 (26%), Positives = 187/397 (47%), Gaps = 22/397 (5%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92
           ++  +A  F+   P Y  L+ +LE ++   +  AL++  + +R+ ++   I +P   V +
Sbjct: 55  LVAVVAILFWALKPTYVPLFSQLEGAEAAEVMEALTQLGVPYRVDNSSGRIEIPQQRVAE 114

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
            R+ LA QGLP  S++ G+EL  + + FG +  ++     RALEGE+ R+I ++  +  A
Sbjct: 115 TRLQLAGQGLP-KSADIGFELLQQESGFGTSRLIEGARFQRALEGELGRSIAALEPVDKA 173

Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVL 210
           RVHI   +   F +    P+ASV++           +  AI HLV+++VP L    VTV+
Sbjct: 174 RVHIARAERSVFVRERVPPSASVVVHLKGSRGLTDTQVGAIVHLVSSSVPELTPDRVTVV 233

Query: 211 DSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM 268
           D +G+LLT++  +++  +    L     ++      +   L   +G D  R  V A+L+ 
Sbjct: 234 DQSGRLLTSDGEDKSSRLSLDHLEYTHRVESRYVDRVQSLLVPIVGRDRVRVQVSADLDF 293

Query: 269 DTQQIREIVYDPDSKVERSIRLSKDAQ-----------RSETSQPESAVTVEQNMPHVSD 317
              +  +  YDPD    RS +L+++ +            + T+QP +   V Q      +
Sbjct: 294 SRVERTQESYDPDKTAIRSEQLNEEERIGADPLAGGIPGALTNQPPAGGVVGQQQAAQGN 353

Query: 318 RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSAD 377
             VP  RS + T       NYE++            + RL+ AVVV+        G    
Sbjct: 354 ATVPSSRSQQTT------RNYEVDRTISHIQETPGGVRRLTAAVVVDYVDQVNEAGEPIR 407

Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
             + D+ +  +  +V  A G N  RGD++ + S  F+
Sbjct: 408 VPRSDAEMETLRDLVREAIGFNEARGDSLQVRSASFV 444


>gi|297379568|gb|ADI34455.1| flagellar M-ring protein FliF [Helicobacter pylori v225d]
          Length = 567

 Score =  137 bits (345), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 121/410 (29%), Positives = 205/410 (50%), Gaps = 30/410 (7%)

Query: 23  LILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           LI A V++  +++F+    F    +    Y  L+ +L+ SD   I   L +  I ++I  
Sbjct: 25  LIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFERLDSSDNALILQHLQQNQIPYKILK 84

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           +  +I +P   V + RI LA+QG+P +S   G+E+FD    FG T F Q I  +RA+EGE
Sbjct: 85  D-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFD-TKDFGATDFDQNIKLIRAIEGE 141

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195
           ++RTI++++ I+ A VHI +P    F      P+ASVM++ + P +  S      I++L+
Sbjct: 142 LSRTIENLNPILKANVHIAIPKDSVFVAKEVPPSASVMLK-LKPDMKLSPTQILGIKNLI 200

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAF 252
           AAAVP L   +V +++  G+ +   ++  N   +  + L   Q  ++ +E  I   LA  
Sbjct: 201 AAAVPKLTTENVKIVNENGESIGEGDILENSKELALEQLRYKQNFENILENKIVNILAPI 260

Query: 253 LGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311
           +G  N   A V AE +   ++  +  +DP++ V     L +  + +   Q      V  N
Sbjct: 261 VGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSN 320

Query: 312 MPHV---SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAVVVNKGR 367
           +  V    D K P     E  +K +  +NYE+  K+I+     +  L RL+ AVVV+ G+
Sbjct: 321 IGPVQGLKDNKEP-----EKYEKSQNTTNYEVG-KTISEIKGEFGTLVRLNAAVVVD-GK 373

Query: 368 LTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
               L   A+  +     D  L +IN +V  A G N  RGD + +++ +F
Sbjct: 374 YKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDDVAVSNFEF 423


>gi|289523574|ref|ZP_06440428.1| flagellar M-ring protein FliF [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503266|gb|EFD24430.1| flagellar M-ring protein FliF [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 490

 Score =  137 bits (345), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 119/387 (30%), Positives = 192/387 (49%), Gaps = 45/387 (11%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
            Y+ L+  L+V D   I   L E+NI +R+  + ++I VP  +V + R+ L  +GLP   
Sbjct: 22  RYEPLFSNLDVEDQAAIVNYLKESNIPYRVDPSFNAILVPRDVVYETRLSLVGEGLPRGG 81

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
           +  G+ELFDK+   G+T F Q++  +RALEGE+ RTIQSI G+ + +V+IV+P+   F +
Sbjct: 82  A-VGFELFDKMK-MGMTDFQQKVGYLRALEGELTRTIQSIRGVQSCKVNIVIPEQKLFLE 139

Query: 167 IGARPTASVMIRAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME 223
                TASV++ ++ P      E   AI HLV+ +V  L   +V V+DS G +L+     
Sbjct: 140 EQFPATASVLL-SLKPGFEMGPEQVKAIVHLVSHSVEGLSPDNVVVVDSKGAILS----- 193

Query: 224 RNILGKSLSI-----VQAIQH--------EIEMNINKALAAFLGVDNFRSAVVAELNMDT 270
            ++L +S  +     V ++Q         E+E    + L    G       V   LN D 
Sbjct: 194 -DMLDESYFVLRNETVTSVQREMERQQELELERKARQMLERIFGPGKAVVRVRVFLNFDR 252

Query: 271 QQ--IREIVYDPDSK-VERSIRLSKDAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSL 326
           ++   RE V  P  + V RS +  ++        P  A     N+P +V   +   P S 
Sbjct: 253 RRTSTREFVPGPSGRGVPRSDQSLEETYTGPGIPPGGAPGTTTNIPGYVITPQTAGPSSY 312

Query: 327 ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLA 386
           E T   E  +NYEI T+     +    +E+++ +V+V+ G+L + +            L 
Sbjct: 313 ERT---ETTTNYEITTREQEVVYTPGGVEKITASVLVD-GQLEQQM------------LN 356

Query: 387 EINKIVSAATGINSRRGDTITITSMDF 413
            + + V+AA GIN  RGD + + SM F
Sbjct: 357 SLRQAVAAAIGINEERGDELYVASMPF 383


>gi|242310458|ref|ZP_04809613.1| flagellar basal-body m-ring protein flif [Helicobacter pullorum MIT
           98-5489]
 gi|239522856|gb|EEQ62722.1| flagellar basal-body m-ring protein flif [Helicobacter pullorum MIT
           98-5489]
          Length = 575

 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 136/483 (28%), Positives = 234/483 (48%), Gaps = 48/483 (9%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNS---------PHYDNLY 52
           A+ +Q+   +K      + +I+ILA++  V I+ F++A    NS         P Y  L+
Sbjct: 5   ALFEQIRNLYKRLNK--KQKIVILATI--VAIVGFISALIVWNSINNKAGVLYPGYAVLF 60

Query: 53  VKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYE 112
             +   D   I   L +  I ++I  + ++I +P  +V + R+ LA+ G+P SS   G+E
Sbjct: 61  EGVSPEDGALIIQQLQQDKIPYKIPKD-NTILIPQELVYEERMKLASNGIPKSSK-VGFE 118

Query: 113 LFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPT 172
           +FD    FG T F Q I  +RA+EGE+ARTI+S+S I  A VHI  P+   F      PT
Sbjct: 119 IFD-TQDFGATDFDQRIKYLRAIEGELARTIESLSPIQKATVHIAQPEKSVFVSEQTPPT 177

Query: 173 ASVMIRAINPS---VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEM--ERNI 226
           ASV++ A  P+     K    I+++V++A+PNL + +V V++  G+ L+  +E+   R +
Sbjct: 178 ASVVL-AFKPAQTLTPKQISGIKNIVSSAIPNLTIENVEVVNEKGEPLSELDELGGAREL 236

Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVE 285
               L      +  +E  I   LA    G +   + V AE +   ++  +  YDP++ V 
Sbjct: 237 AAAQLRYKSNFEQSLEEKIINILAPITGGKEGVVAKVTAEFDFAQKESTQEYYDPNNVVR 296

Query: 286 RSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEE------QSNYE 339
               L    +  E ++P+    V    P V     P+ + LEN D KE+       +NYE
Sbjct: 297 SEQNLE---ESREGAKPKEIGGV----PGVVSNIGPV-QGLENEDAKEKYEKSQTTTNYE 348

Query: 340 INTKSIATTHDNY-KLERLSIAVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSA 394
           + +K+I+     +  + RLS AVVV+     ++     +Q +        + +I  +V  
Sbjct: 349 V-SKTISNIKGEFATIRRLSAAVVVDGKYQKQLDNNGVEQLEYIALNQQEMEQITALVRQ 407

Query: 395 ATGINSRRGDTITITSMDFLENQL--FNSGTVQVSFMDILSRHFATVINALVF-LVGTLL 451
           A G N +RGD +++++   L  Q+  F + T    F++         +  L + +VG +L
Sbjct: 408 AIGYNQQRGDEVSVSNFQ-LNGQISGFKARTPLERFLETSQELLTPFMPLLKYVVVGIIL 466

Query: 452 VTF 454
             F
Sbjct: 467 FLF 469


>gi|146307847|ref|YP_001188312.1| flagellar MS-ring protein [Pseudomonas mendocina ymp]
 gi|145576048|gb|ABP85580.1| flagellar M-ring protein FliF [Pseudomonas mendocina ymp]
          Length = 594

 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 132/519 (25%), Positives = 231/519 (44%), Gaps = 56/519 (10%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++   +   R L L   +   + +  A   +   P Y  LY  L   D  ++   L
Sbjct: 25  LSFLENLAEMSVLRQLGLLVGLAASVAIGFAVVLWSQQPDYRPLYGSLNGLDATQVVETL 84

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + A I++ +  N  ++ V +  + +AR+ LAA G+  + ++ G+E+ D+    G + FM+
Sbjct: 85  NAAGINYTVEPNSGALLVKADDLSRARLRLAAAGVAPTDNSVGFEILDREQGLGTSQFME 144

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINP 182
                R LEGE+ART+ S++ + AARVH+ MP    F +   +P+ASV++     RA+ P
Sbjct: 145 ATRYRRGLEGELARTVSSLNNVKAARVHLAMPKASVFVRDERKPSASVLVELYPGRALEP 204

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHE 240
           S      AI +LVA +VP LD G VTV+D  G LL+  +   E  + GK     + ++  
Sbjct: 205 S---QVMAIVNLVATSVPELDKGQVTVVDQKGNLLSDQQELSELTMAGKQFDYTRRMETL 261

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               ++  L   LG   +++ V A+++  + +    +++PD    RS +   + ++S  S
Sbjct: 262 FTQRVHNILQPVLGTGRYKAEVSADVDFSSVESTSEMFNPDQPALRSEQQVNEQRQS--S 319

Query: 301 QPESAVT---------------------------------VEQNMPHVSDRKVPLPRSLE 327
            P   V                                  V+ N   ++D     P    
Sbjct: 320 LPPQGVPGALSNQPPGAAAAPEQAGGAAGAAGPVAPGQPLVDANGQQITDPITGQPMLAP 379

Query: 328 NTDKKEEQS--NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS-Y 384
               K EQS  N+E++     T     +L RLS+AVVV+     +     A++    +  
Sbjct: 380 YPADKREQSTRNFELDRSISYTKQQQGRLRRLSVAVVVDDQVRVDPATGEANRVPWSADD 439

Query: 385 LAEINKIVSAATGINSRRGDTITITSMDF---LENQLFN-SGTVQVSFMDILSRHFATVI 440
           LA   ++V  + G ++ RGD++++ +  F   L  ++ +     Q  F DI+ +    V+
Sbjct: 440 LARFTRLVQDSVGFDASRGDSVSVINTAFTASLGEEIPDIPFYTQPWFWDIV-KQVLGVL 498

Query: 441 NALVFLVGTL---LVTFLGLHALRRLHNIDDAKKGEVGG 476
             LV + G L   L    G    + L    D + GE+ G
Sbjct: 499 FILVLVFGVLRPVLNNITGGGKGKGLAETGDVELGEMAG 537


>gi|187478210|ref|YP_786234.1| flagellar MS-ring protein [Bordetella avium 197N]
 gi|115422796|emb|CAJ49324.1| flagellar M-ring protein [Bordetella avium 197N]
          Length = 544

 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 121/453 (26%), Positives = 204/453 (45%), Gaps = 50/453 (11%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +   P Y  L+  L+  D   I  AL++ N+ +R SDNG +I VP + V   R+ LA QG
Sbjct: 46  WSREPDYKVLFSNLDDRDGGAIVTALTQMNVPYRFSDNGGAILVPGNRVYDLRMQLAGQG 105

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG + F +++   RALEGE+AR+I+++  +  ARVH+ +P  
Sbjct: 106 LPRGGS-VGFELMDNAR-FGASQFAEQVNYQRALEGELARSIEAMHTVQHARVHLALPRQ 163

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    PT SV++          A+  AI  LVA++VP+L   +V+++D  G+LL+A
Sbjct: 164 SLFVRDRQPPTGSVLLTLYPGRSLAEAQVSAIAWLVASSVPDLSADNVSIVDQNGRLLSA 223

Query: 220 NEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
              E R +    +   +  +      I   L   +G  N  +    E++   ++    +Y
Sbjct: 224 PAGEGRGLDADQMRFAREYEQRTVERILTILNPLVGPGNVHAQASVEVDFARREETSEIY 283

Query: 279 DPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPHVSDRKVPLPR----------- 324
            P+ +  ++   S+    S  +    A  V     N P  +  + PL             
Sbjct: 284 RPNQEPGQAAVRSQQTSDSRQTNASPAAGVPGALSNQPPAAT-QAPLTNPPAPAQPQAQP 342

Query: 325 -------SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSAD 377
                   +   ++++   NYE++           +++RLS+AVVVN      +  +  D
Sbjct: 343 AAPQQAAQISGNERRDATINYEVDRTISHVKQPVGQVKRLSVAVVVN-----HLPNKDGD 397

Query: 378 -QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFM---DILS 433
            Q      L+++  +V  A G +  RGD++ +       N  FN     V      D++ 
Sbjct: 398 PQALPPEELSKLTTLVREAMGYSEARGDSLNLV------NSQFNDAPPTVPLWRDPDLI- 450

Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
              AT+  AL ++ G LL+ F    A RR+  I
Sbjct: 451 ---ATIKTALGWVFG-LLIAFW---AYRRIRPI 476


>gi|330808215|ref|YP_004352677.1| flagellar MS-ring protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376323|gb|AEA67673.1| flagellar MS-ring protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 594

 Score =  137 bits (344), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 137/570 (24%), Positives = 247/570 (43%), Gaps = 83/570 (14%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92
           + +  A   +   P Y  LY  L   D  ++   L+ A+I + +  N  ++ V +  V +
Sbjct: 50  VAIGFAVVLWSQQPDYRPLYGSLAGMDAKQVMETLASADIPYTVEPNSGALLVKADDVAR 109

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
           AR+ LAA G+  +  N G+E+ DK    G + FM+     R LEGE+ARTI S++ +  A
Sbjct: 110 ARLKLAAAGVTPTDGNIGFEILDKDQGLGTSQFMEATRYRRGLEGELARTISSLNNVKGA 169

Query: 153 RVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDV 207
           RVH+ +P    F +   +P+ASV++     R++ P       AI +LVA +VP L    +
Sbjct: 170 RVHLAIPKSSVFVRDERKPSASVLVELYSGRSLEPG---QVLAIINLVATSVPELSKSQI 226

Query: 208 TVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE 265
           TV+D  G LL+  A   E  + GK     + ++  +   ++  L   LG D +++ V A+
Sbjct: 227 TVVDQKGNLLSDQAENSELTMAGKQFDYSRRMEGMLTQRVHNILQPILGNDRYKAEVSAD 286

Query: 266 LNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP------------ 313
           ++    +     ++PD    RS + S + QR+ ++ P+       N P            
Sbjct: 287 VDFSAVESTSEQFNPDQPALRSEQ-SVNEQRTASNGPQGVPGALSNQPPSPASAPQTTGG 345

Query: 314 --------------------HVSDRKVPLPRSLENTDKKEEQS--NYEINTKSIATTHDN 351
                                + D     P        K +QS  N+E++     T    
Sbjct: 346 ATAAAGMVQPGQPLIDANGQQIMDPATGQPMLAPYPADKRQQSTKNFELDRSISHTKQQQ 405

Query: 352 YKLERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
            +L RLS+AVVV ++ ++    G ++        LA   ++V  A G ++ RGD++++ +
Sbjct: 406 GRLTRLSVAVVVDDQVKVNAANGETSRAPWSADELARFTRLVQDAVGFDASRGDSVSVIN 465

Query: 411 MDF-------LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL---LVTFLGLHAL 460
           + F       + +  F S   Q  F D++ +    V+  LV + G L   L    G    
Sbjct: 466 VPFSLERGEVVADIPFYS---QPWFWDVV-KQVLGVLFILVLVFGVLRPVLNNITGGGKS 521

Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF-SHSRNLQSRI 519
           ++L    D + G +GG               G + ND ++L      +  S S    +++
Sbjct: 522 KQLAGFGDVELGGMGG-------------LDGELANDRVSLGGPQSILLPSPSEGYDAQL 568

Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKW 549
           N+  S         ++  +  R A+++++W
Sbjct: 569 NAIKS---------LVAEDPGRVAQVVKEW 589


>gi|33601565|ref|NP_889125.1| flagellar MS-ring protein [Bordetella bronchiseptica RB50]
 gi|33576001|emb|CAE33081.1| flagellar M-ring protein [Bordetella bronchiseptica RB50]
          Length = 558

 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 124/453 (27%), Positives = 202/453 (44%), Gaps = 52/453 (11%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  L+  L+  D   I  AL + N+ +R SDNGS++ VP+  V   R+ LA+Q
Sbjct: 45  MWSREPDYKVLFSNLDDRDGGAIVSALGQMNVPYRFSDNGSALLVPAERVYDTRMQLASQ 104

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   S  G+EL D    FG + F ++I   R LEGE+AR+I+++  +  ARVH+ MP 
Sbjct: 105 GLPRGGS-VGFELLDNTR-FGASQFAEQINYQRGLEGELARSIEAMHTVQHARVHLAMPR 162

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    PTASV++          A+  A+  LVA++VP L   +V+++D  G+LL+
Sbjct: 163 QSLFVRDRQAPTASVLLNLYPGRSLSDAQVSAVAWLVASSVPELTAENVSIVDQNGRLLS 222

Query: 219 ANEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
           A   E R +    L  V+ ++      I   L   +G  N  +   AE++   ++    V
Sbjct: 223 APLGEGRGMDADQLRFVREMEQRTVERILTILNPLVGPGNVHAQASAEIDFARREETSEV 282

Query: 278 YDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPHVSDRKVPL--PRSL------ 326
           Y P+ +  ++   S+    S  + P +A  V     N P  ++ + P+  P ++      
Sbjct: 283 YRPNQEPGQAAVRSQQTSDSRQTGPNAAQGVPGALSNQPP-ANAQAPIVNPPAVAGTPQQ 341

Query: 327 ------------------------ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
                                    + D+ +   NYE++            L+RLS+AVV
Sbjct: 342 QQQQRAQQQAAGATTTQTQPGAAAPSNDRHDATINYEVDRTISHVKQPVGMLKRLSVAVV 401

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           VN   L    G S  +      L ++  +V  A G +  RGD++ +       N  FN  
Sbjct: 402 VNY--LPNKEGES--EALPPEELNKLTNLVREAMGYSEARGDSLNLV------NSQFNDT 451

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455
            V V          A +  AL ++ G +L  +L
Sbjct: 452 PVAVPLWRD-PELIAMIKTALGWMFGLILAFWL 483


>gi|323225205|gb|EGA09449.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
          Length = 366

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/282 (31%), Positives = 148/282 (52%), Gaps = 13/282 (4%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V I++ M    +  +P Y  L+  L   D   I   L++ NI +R ++   +
Sbjct: 28  LIVAGSATVAIVVAMV--LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGA 85

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE+ART
Sbjct: 86  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELART 143

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAA 197
           I+++  + +ARVH+ MP    F +    P+ASV +     RA++        A+ HLV++
Sbjct: 144 IETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALD---EGQISAVVHLVSS 200

Query: 198 AVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVD 256
           AV  L  G+VT++D +G LLT +N   R++    L     ++  I+  I   L+  +G  
Sbjct: 201 AVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNG 260

Query: 257 NFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
           N  + V A+L+   ++  E  Y P+    ++   S+    SE
Sbjct: 261 NVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISE 302


>gi|77457763|ref|YP_347268.1| flagellar MS-ring protein [Pseudomonas fluorescens Pf0-1]
 gi|77381766|gb|ABA73279.1| flagellar M-ring protein [Pseudomonas fluorescens Pf0-1]
          Length = 595

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 138/578 (23%), Positives = 247/578 (42%), Gaps = 98/578 (16%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92
           + +  A   +   P Y  LY  L   D  ++   L+ A+I + +  N  ++ V +  + +
Sbjct: 50  VAIGFAVVLWSQQPDYRPLYGSLAGMDAKQVMDTLASADIPYTVEPNSGALLVKADDLSR 109

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
           AR+ LAA G+  S  N G+E+ DK    G + FM+     R LEGE+ARTI S++ +  A
Sbjct: 110 ARLKLAAAGVTPSDGNIGFEILDKEQGLGTSQFMEATRYRRGLEGELARTISSLNNVKGA 169

Query: 153 RVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDV 207
           RVH+ +P    F +   +P+ASV++     R++ P       AI +LVA +VP L    +
Sbjct: 170 RVHLAIPKSSVFVRDERKPSASVLVELYSGRSLEPG---QVVAIINLVATSVPELSKSQI 226

Query: 208 TVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE 265
           TV+D  G LL+  A   E  + GK     + ++  +   ++  L   LG D +++ V A+
Sbjct: 227 TVVDQKGNLLSDQAENAEMTMAGKQFDYSRRMESMLTQRVHNILQPVLGNDRYKAEVSAD 286

Query: 266 LNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRS 325
           ++    +     ++PD    RS + S + QR+ ++ P       Q +P     + P P S
Sbjct: 287 VDFSAVESTAEQFNPDQPALRSEQ-SVNEQRTASNGP-------QGVPGALSNQPPSPAS 338

Query: 326 LENT----------------------------------------DKKEEQS-NYEINTKS 344
              T                                        DK+++ + N+E++   
Sbjct: 339 APQTTGGAAAPASMVQPGQPLVDANGQQIMDPATGQPMLAPYPADKRQQSTKNFELDRSI 398

Query: 345 IATTHDNYKLERLS-IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403
             T     +L RLS   VV ++ ++    G +         LA   ++V  A G ++ RG
Sbjct: 399 SHTKQQQGRLNRLSVSVVVDDQVKINPANGETTRAPWSADELARFTRLVQDAVGFDASRG 458

Query: 404 DTITITSMDF-------LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL---LVT 453
           D++++ +M F       + +  F S   Q  F DI+ +    V+  LV + G L   L  
Sbjct: 459 DSVSVINMPFSAERGEVIADIPFYS---QPWFWDIV-KQVLGVLFILVLVFGVLRPVLNN 514

Query: 454 FLGLHALRRLHNI-DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF-SH 511
             G    + L  +  D + G +GG               G + ND ++L      +  S 
Sbjct: 515 ITGGGKSKELAGLGGDMELGGMGG-------------LDGELSNDRVSLGGPTSILLPSP 561

Query: 512 SRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549
           S    +++N+  S         ++  +  R A+++++W
Sbjct: 562 SEGYDAQLNAIKS---------LVAEDPGRVAQVVKEW 590


>gi|117624078|ref|YP_852991.1| flagellar M-ring protein [Escherichia coli APEC O1]
 gi|115513202|gb|ABJ01277.1| Flagellar M-ring protein [Escherichia coli APEC O1]
          Length = 333

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/281 (31%), Positives = 145/281 (51%), Gaps = 7/281 (2%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +M+ +    +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIVAGSAAVAVMVALI--LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I++I  +  ARVH+ MP    F +    P+ASV +  +        +  AI HLV++AV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 201 NLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
            L  G+VT++D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  
Sbjct: 201 GLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIH 260

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           + V A+L+  +++  E  Y P+     +   S+    SE S
Sbjct: 261 AQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQS 301


>gi|152997451|ref|YP_001342286.1| flagellar MS-ring protein [Marinomonas sp. MWYL1]
 gi|150838375|gb|ABR72351.1| flagellar M-ring protein FliF [Marinomonas sp. MWYL1]
          Length = 558

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 116/419 (27%), Positives = 204/419 (48%), Gaps = 38/419 (9%)

Query: 21  RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80
           R L L   +   I + +AA  + N P Y  +   +   + ++I   LS  NI F++  N 
Sbjct: 28  RQLALMVGLAASIAIGLAAVLWSNGPDYKPVLSSITDYNADQIVEILSVNNIPFKLDQNT 87

Query: 81  SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140
            ++ V S    +AR+ LA  G+  S +  G E+ D+    G + F++     R LEGE++
Sbjct: 88  GALLVESDFYHQARLKLAGSGI-VSDNIVGMEIMDQEQGLGTSQFVETTRYRRGLEGELS 146

Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLV 195
           RTI S+  I +ARVH+ +P    F +   +P+ASV +     R ++ S     EAI +LV
Sbjct: 147 RTIASLQSIKSARVHLAIPKESVFVRDTRKPSASVFLELYPGRRLDKS---QVEAIVNLV 203

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMNINKALAAFL 253
           A+++  L   DVTV+D  G LLT   ++ E ++ GK     + ++  +   +N  L   +
Sbjct: 204 ASSISQLSDKDVTVVDQRGTLLTEKDSDSELSVAGKQFDYARKVEEVLLQRVNNILGPVI 263

Query: 254 GVDNFRSAVVAELNMDTQQIREIVYDPD---SKVERSIRLSKDAQRSE-------TSQPE 303
           G   F++ V A+++    +     Y+PD    + E+++R ++ A  S        T+QP 
Sbjct: 264 GQGRFKAEVSADVDFTAVEKTNEQYNPDLLALRSEQTLRENRSAGTSASGIPGALTNQPP 323

Query: 304 SAVTVEQNMPHVSDRKVPLP--RSLENTDKKEEQS-NYEINTKSIATTHDNYKLERLSIA 360
            AVT+ +    V +   P+    S +N   +EE + N+E++     T      + RLS+A
Sbjct: 324 GAVTIPE---AVDENGAPIGGNTSAKNGQSREETTRNFELDRSISYTKRQQGMVRRLSVA 380

Query: 361 VVVNKGRLTEVLGRSADQGKI------DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           VVV+     +++  + D   I      D  L  +  +V  A G +  RGD++++ +  F
Sbjct: 381 VVVD-----DLMSLNPDTSAIVRTPWNDDELGRLTLLVRDAVGYDPSRGDSVSVINSPF 434


>gi|304312787|ref|YP_003812385.1| Flagellar basal-body M-ring protein [gamma proteobacterium HdN1]
 gi|301798520|emb|CBL46750.1| Flagellar basal-body M-ring protein [gamma proteobacterium HdN1]
          Length = 575

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 113/442 (25%), Positives = 207/442 (46%), Gaps = 30/442 (6%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P +  L+  + + + ++++  L+   I F++      + V +  +  AR+ LA +
Sbjct: 56  LWSTEPEFRPLFTDVSMIEASQVADVLAREKIQFKVDPASGLVMVRAEKINDARMALAKE 115

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP  + N GYEL DK   FG + FM++    R++EGE+A+TI S++ +  ARVH+ +P 
Sbjct: 116 GLPGGN-NMGYELLDKEQGFGTSQFMEKTRYFRSIEGELAKTISSLTPVRNARVHLAIPK 174

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE-----AIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F     +PTASV +  + PS  +S E     AI HLVA++VP +   DVTV+D  G+
Sbjct: 175 RSVFINDKRKPTASVFVE-LYPS--RSLERDQVAAIVHLVASSVPEMSSKDVTVVDQRGR 231

Query: 216 LLTAN--EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI 273
           LL+ +    E  I  + L     I+ +    I   L   LG + F+  + A+++ +  + 
Sbjct: 232 LLSEDTSNGEMTIAARQLDYQHNIEEKYLGRIRDLLEPLLGPERFKVQLTADIDFNVVEQ 291

Query: 274 REIVYDPDSKVERSIR-LSKDAQRSE--------TSQPESAVTVEQNMPHVSDRKVPLPR 324
               Y+PD    RS + LS+ +  +         ++QP  A +V +     ++       
Sbjct: 292 TAESYNPDLPALRSEQTLSEKSSAAGPMGVPGALSNQPPGAASVPEQATGSNNAGNNASS 351

Query: 325 SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY 384
           +     +++   NYE++     T      ++RLS+AVV++          +         
Sbjct: 352 TDAGNQRQQATRNYELDRTISHTRRQVGGIKRLSVAVVLDDKWQNPAADAAPGTQPTRVA 411

Query: 385 LAE-----INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRH 435
           L+E     I  ++  A G ++ RGD++++ +  F   Q  +   +    Q  F D++ R 
Sbjct: 412 LSEAELERITLLIKDAVGYDAARGDSVSVINQPFSPVQFDSIPDLPIWQQAWFQDVI-RQ 470

Query: 436 FATVINALVFLVGTLLVTFLGL 457
            A  +  ++ + G L     GL
Sbjct: 471 VAGWLVVIILIFGVLRPILKGL 492


>gi|296135691|ref|YP_003642933.1| flagellar M-ring protein FliF [Thiomonas intermedia K12]
 gi|295795813|gb|ADG30603.1| flagellar M-ring protein FliF [Thiomonas intermedia K12]
          Length = 568

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 111/392 (28%), Positives = 186/392 (47%), Gaps = 30/392 (7%)

Query: 48  YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           Y  LY  L   D   +   L + NI +RI+  G+ I VPS+ V   R+ LAA GLP  + 
Sbjct: 50  YQVLYTNLSERDGGAVIGELQKLNIPYRITGGGAVIEVPSAQVYATRMKLAANGLPKGA- 108

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
             G+E+ D     G + F++ +   RALEG + RTI+S+S + +A VH+ +P    F   
Sbjct: 109 GVGFEVLDH-EPMGTSQFVERVNYQRALEGSLGRTIESLSAVQSATVHLAIPKPSVFLSE 167

Query: 168 GARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MER 224
             +P+ASV+++     V   A+   I HLV++AV  L   +V+V+D  G LLT+ +  + 
Sbjct: 168 AEKPSASVLLKLYPGRVLSGAQVAGIVHLVSSAVAGLGDKNVSVVDQDGNLLTSGQRADS 227

Query: 225 NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV 284
            I    L     I+ +    I   LA  +G +  R AV A+++    +   +VY     +
Sbjct: 228 GIQPDQLMYRNTIEQQYRKQIEALLAPLVGNEGVRVAVSADIDFAKTESSSVVYGQGHLL 287

Query: 285 ERSIR---------LSKDAQRSETSQPESAVTVEQNM--------PHVSDRKVPLPRSLE 327
            +  +         L      + ++QP   VT    M        P    +  P  ++L 
Sbjct: 288 SQQQQSTNSSGGGTLPAGVPGALSNQPPGGVTAPFVMGTASAPLTPQQLTQITPSLKTLA 347

Query: 328 NTDKKEEQ-SNYEINTKSIATTHDNYKLERLSIAVVVN-KGRLTEVLGRSADQGKIDSYL 385
            T       SNY+++     T      ++RLS++V+VN + +  + +  SA Q      L
Sbjct: 348 PTAASSSATSNYDLDKTVSHTQQPVGSVKRLSVSVLVNDQAKGGKPVPLSAAQ------L 401

Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQ 417
            ++ ++V  A G +++RGDT++I +M F   Q
Sbjct: 402 GQMKQLVENAIGFDAKRGDTVSIVNMPFTAAQ 433


>gi|51597648|ref|YP_071839.1| flagellar MS-ring protein [Yersinia pseudotuberculosis IP 32953]
 gi|51590930|emb|CAH22586.1| putative flagellar M-ring protein [Yersinia pseudotuberculosis IP
           32953]
          Length = 546

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 119/426 (27%), Positives = 215/426 (50%), Gaps = 38/426 (8%)

Query: 3   ILDQLLQFFKSGTSLGRTRILIL-ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           +LD++ Q F  G     T+I+++ A+ +LV   +  +   + +S  Y  L+   E   + 
Sbjct: 1   MLDKIKQKFSPGQLGENTKIILMSAAALLVTAAIIFS--LWRSSQGYTALFGSQENIPIT 58

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           ++   L    I +RI+ +   + V  + +GKARI LAA+G+ +++   GYEL DK +  G
Sbjct: 59  QVVEVLEGEAIAYRINPDNGQVLVAENQLGKARILLAAKGI-TATLPIGYELMDKESMLG 117

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRAI 180
            + F+Q +   R+LEGE+A+++ ++S +  ARVH+ M +  SF     A  +ASV++R  
Sbjct: 118 SSQFIQNVRYKRSLEGELAQSMMALSAVEYARVHLGMSEASSFAISNHADNSASVVLRLR 177

Query: 181 NPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIV 234
                 + +  AI  LVA ++P +   +V V+D  G+LL+    AN      +     + 
Sbjct: 178 YGQTLSTEQVGAIVQLVAGSIPGMKPANVRVVDQHGELLSQAYQANSEGVPSVKSGTELA 237

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV--YDPDSKVERSIRLSK 292
             +Q   E NI   L + +G +N+R +V  +L+M   +I E    Y PD       R++ 
Sbjct: 238 HYLQSTTEKNIANLLNSVIGANNYRISVSTQLDMS--RIEETAEHYGPDP------RIND 289

Query: 293 DAQRSETSQPESAVTV-----EQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
           +  + E S  + A+ +      Q +P     + P   S     +K     Y+ N + +  
Sbjct: 290 ENIQQENSNDDMAMGIPGSLSNQPIPQSQAGQTPAAVSRSQAQRK---YIYDRNIRHV-- 344

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
            +  YKLE++++AVV+NK  L  +   + +Q +      E+ +++  A GI+ +RGD++T
Sbjct: 345 RYPGYKLEKMTVAVVLNKS-LPVLEQWTPEQQE------ELKRLIEDAAGIDVKRGDSLT 397

Query: 408 ITSMDF 413
           I  M F
Sbjct: 398 INMMAF 403


>gi|169831911|ref|YP_001717893.1| flagellar MS-ring protein [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169638755|gb|ACA60261.1| flagellar M-ring protein FliF [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 518

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 114/404 (28%), Positives = 194/404 (48%), Gaps = 39/404 (9%)

Query: 22  ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81
           +L++ S++   ++ ++A   FV   +Y  L+  LE  +   I   L    I + +SD G+
Sbjct: 27  LLVIGSLL---VLYYLAQ--FVRQMNYTTLFAGLEPREAGAIVEQLDGMRIPYMLSDGGT 81

Query: 82  SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
           +I VP + V +ARI LA  G    +  +G+ELFD+    G+T F Q++   RAL+ E+ R
Sbjct: 82  TIQVPRAQVDQARIQLATSGA-LGADGAGWELFDR-TKLGVTEFEQQVNYQRALQEELRR 139

Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRH---LVAAA 198
           TI  +  + AARVH+V+P+   F    A PTASV ++ + P    +   +R    LVA +
Sbjct: 140 TIVQLDEVEAARVHLVLPEKSIFATEKAPPTASVAVK-LRPGTDLNQSQVRGVVALVAGS 198

Query: 199 VPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS---IVQAIQHEIEMNINKALAAFLGV 255
           V  L   +V ++D  G+LL  +  +  + G +L+   I +  + E+EM +   L   +G 
Sbjct: 199 VEGLTPENVHLVDMRGRLLHPDGHQDPVSGLALTHQEIKRNYERELEMRLQNMLQRIVGP 258

Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKV--ERSIRLSKDAQRSETSQPESAVTVEQNMP 313
           D     V A+L+   QQ    V   +++V  E+++R   +   +    P +   +    P
Sbjct: 259 DRVVVMVSADLDFSQQQSVSTVPYGEAQVVSEQTVREESEGSGTGGGVPGTDANLPATYP 318

Query: 314 ---HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTE 370
                +D   P      +  ++E  +NY++ T          ++ RLS +VVV+      
Sbjct: 319 LAGRPADAGAPT-----SFVREERTANYQVGTLQQTVIQPPGEVRRLSTSVVVD------ 367

Query: 371 VLGRSADQGKIDSYLAE-INKIVSAATGINSRRGDTITITSMDF 413
                   G + +  AE I  +V+AA G N  RGD I +  M F
Sbjct: 368 --------GDLSAARAEQIQGVVTAALGYNPERGDQILVAPMAF 403


>gi|224825756|ref|ZP_03698860.1| flagellar M-ring protein FliF [Lutiella nitroferrum 2002]
 gi|224601980|gb|EEG08159.1| flagellar M-ring protein FliF [Lutiella nitroferrum 2002]
          Length = 543

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 116/451 (25%), Positives = 210/451 (46%), Gaps = 30/451 (6%)

Query: 25  LASVILVPIMLFMAARFFV--NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           L  ++++ I L +A  F++  +   Y  ++   E      +   L    I +R+      
Sbjct: 9   LLPLLVLAIGLTLAVTFWLWRDDARYKPVFGAQEKVVAADMMAVLDAEKIPYRLHPQTGQ 68

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           + VP + +G+ R+ LAA+G+  +   +G EL DK +  G++ F+Q++   R LEGE+ ++
Sbjct: 69  VLVPDADLGRVRMALAAKGV-VAQLPAGLELLDKNDPLGVSQFVQDVRFRRGLEGELTQS 127

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLVAAAV 199
           I ++  +  ARVH+ +P   SF   G    ++ ++  + P    S E   A+ +LVA +V
Sbjct: 128 ILALEPVQGARVHLSLPRSSSFVTAGEDKGSASVVVTLKPGRQLSNEQIAAVVNLVAGSV 187

Query: 200 PNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQ---HEIEMNINKALAAFLGVD 256
             L+   VT++D  G LL+ + +E    G+  +   A +    E   N+   L   +G D
Sbjct: 188 STLNPAKVTLVDQAGNLLS-SRIELAEGGQPAAESDAAKRYREEALENVRALLTPVIGAD 246

Query: 257 NFRSAVVAELNMD-TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNM 312
           NF+ ++ AE++ D  ++ RE       K   + +++ +A R E S  + A+ +     N 
Sbjct: 247 NFKVSITAEVDNDRVEETRE-------KYGEAPKITNEASREEKSNDKLALGIPGSLSNR 299

Query: 313 PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372
           P  +D   P   S+    K      Y  +   +   H   +L RLS+AVV+N+       
Sbjct: 300 PINTDSSAPAQESVGGNSKNAVTRQYAYDRSIMQIKHARGRLSRLSVAVVLNQAAAPAKG 359

Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDIL 432
           G  A+Q      LA ++K++    GI + RGD + +T+M+F           Q    D L
Sbjct: 360 GWQAEQ------LANVDKVLRNGLGIKAERGDALAVTAMNFPGQVALEPWWQQ---RDTL 410

Query: 433 SRHFATVINALVFLVGTLLVTFLGLHALRRL 463
               + +   +  L+G LL+    L  LR+ 
Sbjct: 411 LDGASWLAYGVALLLGYLLIARPLLKILRQW 441


>gi|89056671|ref|YP_512122.1| flagellar MS-ring protein [Jannaschia sp. CCS1]
 gi|88866220|gb|ABD57097.1| flagellar M-ring protein FliF [Jannaschia sp. CCS1]
          Length = 583

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 117/412 (28%), Positives = 200/412 (48%), Gaps = 15/412 (3%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +L+ LL+ +      GR R L++  +  + ++L +  R   + P +  LY  L+ +    
Sbjct: 16  VLNALLEIWNGMN--GRRRGLLIGGIAALAVVLVILTRI-ASQPSFQLLYSGLDPAAAGE 72

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +  AL+   +  RI  +G  I V ++   + R+ LA +GLP++    GYEL D ++ FG 
Sbjct: 73  VVDALAARGVAHRI--DGDQIFVDATQRDELRMALAGEGLPANGPQ-GYELLDSLSGFGT 129

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           TS M +    RA EGE++RTI +   I AARVHI  P    F+      TASV IR  + 
Sbjct: 130 TSQMFDAAYWRAKEGELSRTILASPAIRAARVHIANPSSDPFQPTN-EVTASVAIRPASG 188

Query: 183 SVYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEI 241
            +    A A+R+LVA++VP L   +VTV+D+    +   + +      +      +Q   
Sbjct: 189 GLAPGHAHALRYLVASSVPGLRPENVTVIDADSGQVLGGQGQMTPAADAAGRATTLQQ-- 246

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
             N+ + LAA +G  N    V  EL    + I E V DP+S+V  +   +++   + T  
Sbjct: 247 --NVERLLAARVGPSNAVVQVSVELETARETILERVIDPESRVIIATD-TEEMDNASTDG 303

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
             + VTV  N+P   D       S + T+ + E+  ++++        +   + R+++AV
Sbjct: 304 AAAGVTVASNLPD-GDGAAGEGSSAQTTESR-ERVTFDMSELQREVEREPGDIRRITVAV 361

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           +VN        G +    +  + L  + ++V +A G +  RGD +TI SM F
Sbjct: 362 LVNGVEEINASGVAETIPRPAAELDALTELVRSAVGYDEARGDIVTIQSMAF 413


>gi|294339862|emb|CAZ88225.1| putative Flagellar M-ring protein FliF [Thiomonas sp. 3As]
          Length = 568

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 111/395 (28%), Positives = 183/395 (46%), Gaps = 36/395 (9%)

Query: 48  YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           Y  LY  L   D   +   L + NI +RI+  G+ I VPS+ V   R+ LAA GLP  + 
Sbjct: 50  YQVLYTNLSERDGGAVIGELQKLNIPYRITGGGAVIEVPSAQVYATRMKLAANGLPKGA- 108

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
             G+E+ D     G + F++ +   RALEG + RTI+S+S + +A VH+ +P    F   
Sbjct: 109 GVGFEVLDH-EPMGTSQFVERVNYQRALEGSLGRTIESLSAVQSATVHLAIPKPSVFLSE 167

Query: 168 GARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MER 224
             +P+ASV+++     V   A+   I HLV++AV  L   +V+V+D  G LLT+ +  + 
Sbjct: 168 AEKPSASVLLKLYPGRVLSGAQVAGIVHLVSSAVAGLGDKNVSVVDQDGNLLTSGQRADS 227

Query: 225 NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV 284
            I    L     I+ +    I   LA  +G +  R AV A+++    +   +VY     +
Sbjct: 228 GIQPDQLMYRNTIEQQYRKQIEALLAPLVGNEGVRVAVSADIDFAKTESSSVVYGQGHLL 287

Query: 285 ERSIR---------LSKDAQRSETSQPESAVTVEQNM--------PHVSDRKVPLPRSLE 327
            +  +         L      + ++QP   VT    M        P    +  P  ++L 
Sbjct: 288 SQQQQSTNSSGGGTLPAGVPGALSNQPPGGVTAPFVMGTASAPLTPQQLTQITPSLKTLA 347

Query: 328 NTDKKEEQ-SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI----D 382
            T       SNY+++     T      ++RLS++V+VN           A  GK      
Sbjct: 348 PTAASSSATSNYDLDKTVSHTQQPVGSVKRLSVSVLVND---------QAKGGKPVPLNP 398

Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           + L ++ ++V  A G +++RGDT++I +M F   Q
Sbjct: 399 AQLGQMKQLVENAIGFDAKRGDTVSIVNMPFTAAQ 433


>gi|109947514|ref|YP_664742.1| flagellar MS-ring protein [Helicobacter acinonychis str. Sheeba]
 gi|109714735|emb|CAJ99743.1| flagellar basal-body M-ring protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 567

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 123/427 (28%), Positives = 214/427 (50%), Gaps = 25/427 (5%)

Query: 3   ILDQLLQFF-----KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEV 57
           +L +++ FF     K   +L    +LI A ++ + +  F    +      Y  L+  L+ 
Sbjct: 6   LLQRIVDFFIKLNKKQKIALIAMGVLITALIVFLLLYPFKEKGYVQGG--YGVLFEGLDP 63

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
           SD   I   L +  I +++S +  +I +P   V + RI LA+QG+P +S   G+E+FD  
Sbjct: 64  SDNALILQYLQQNQIPYKVSKD-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFDS- 120

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
             FG T F Q +  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+ASVM+
Sbjct: 121 KDFGATDFDQNVKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180

Query: 178 RAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSL 231
           + + P +  S      I++L+AAAVP L + +V +++  G+ L   ++  N   +  + L
Sbjct: 181 K-LKPDMRLSPTQILGIKNLIAAAVPKLTIENVKIVNENGEPLGEGDILENSKELALEQL 239

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVV-AELNMDTQQIREIVYDPDSKVERSIRL 290
              Q  ++ +E  I   LA  +G  N   A V AE +   ++  +  +DP++ V     L
Sbjct: 240 HYKQNFENILESKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNL 299

Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
            +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+  K+I+    
Sbjct: 300 EEKKEGAPKKQVGGVPGVVSNIGPVQGLKD--NKDQEKYEKSQNTTNYEVG-KTISEIKG 356

Query: 351 NY-KLERLSIAVVVN-KGRLTEVLGRSADQGKI--DSYLAEINKIVSAATGINSRRGDTI 406
            +  L RL+ AVVV+ K ++    G +A + +   D  L +IN +V  A G N  RGD +
Sbjct: 357 EFGTLVRLNAAVVVDGKYKIALKDGTNALEYEPLSDEALKKINALVKQAIGYNQNRGDDV 416

Query: 407 TITSMDF 413
            +++ +F
Sbjct: 417 AVSNFEF 423


>gi|296103640|ref|YP_003613786.1| flagellar M-ring protein [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295058099|gb|ADF62837.1| flagellar M-ring protein [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 302

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/255 (32%), Positives = 137/255 (53%), Gaps = 5/255 (1%)

Query: 35  LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKAR 94
           + +A  F+   P Y  L+  +   +   I   LS+ N+ +RI   G  I VP+S V + R
Sbjct: 41  VIIALMFWAKEPDYRVLFSNISDEEGGAIVAQLSQLNVPYRIDTPGGVIMVPASQVHEVR 100

Query: 95  IHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARV 154
           + LA QGLP      G+EL D+   FG++ F +++   RALEGE+ARTI+++  I +A V
Sbjct: 101 MKLAQQGLPKGG-GVGFELLDQ-EKFGVSQFTEQVNYQRALEGELARTIENLGPIQSACV 158

Query: 155 HIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDS 212
           H+  P    F +   +PTASV +  +       ++  AI HL+++AV  L  G VT++D 
Sbjct: 159 HLATPKPSMFVREQKKPTASVTVNLLQGRTLDDSQVVAITHLISSAVTGLAAGSVTIVDQ 218

Query: 213 TGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272
            G LLT + + R +    L     I+ + +  I + LA  +G +N R+ V A+++   Q+
Sbjct: 219 RGNLLTQSGL-RGLQTAHLKYTSEIETDYQQRIQRILAPLVGDENIRAQVTAQIDFTEQE 277

Query: 273 IREIVYDPDSKVERS 287
             +  Y P+S  E++
Sbjct: 278 QTQEQYQPNSDPEKN 292


>gi|329298594|ref|ZP_08255930.1| flagellar MS-ring protein [Plautia stali symbiont]
          Length = 573

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 81/247 (32%), Positives = 135/247 (54%), Gaps = 11/247 (4%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I   L++ NI ++ ++NG ++ VP+    +  + LA QG
Sbjct: 48  WAKAPDYRVLYNNLSDEDGGAIVTQLTQMNIPYQFAENGGALMVPADKEHELSLRLAQQG 107

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL DK   FG++ F ++I   RALEGE+ARTI+++  + +ARVH+ MP  
Sbjct: 108 LPKGGS-VGFELMDK-EKFGISQFSEQINYQRALEGELARTIETLGPVKSARVHLAMPKP 165

Query: 162 GSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
             F +    P+ASV +     RA++       +AI+H+V+++V  L +G+VTV+D  G+L
Sbjct: 166 TLFVREQKSPSASVTLNLQPGRALDKG---QIQAIQHMVSSSVAGLPLGNVTVVDQAGRL 222

Query: 217 LTANEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LT ++ E R++    L     ++   +  I   L   L   N  + V A++N D  +  +
Sbjct: 223 LTRSDSEGRDLNDAQLKYASEVEARYQQRIEAILNPILDQGNVHAQVTAQINFDRSEQTD 282

Query: 276 IVYDPDS 282
             Y P++
Sbjct: 283 EKYQPNA 289


>gi|34498454|ref|NP_902669.1| flagellar MS-ring protein [Chromobacterium violaceum ATCC 12472]
 gi|34104309|gb|AAQ60668.1| flagellar M-ring protein [Chromobacterium violaceum ATCC 12472]
          Length = 542

 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 110/411 (26%), Positives = 197/411 (47%), Gaps = 44/411 (10%)

Query: 25  LASVILVPIMLFMAARFFV--NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           L  ++L+ I L + A  ++  +   Y  ++   E      +  AL    I +R+      
Sbjct: 15  LLPIVLLAIGLSVVATLWLWRDDASYKPVFGAQEKVSGADMMAALDAEKIPYRVHPQTGQ 74

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           + VP   + +AR+ LAA+G+  +   +G EL DK +  G++ F+Q++   R LEGE+ ++
Sbjct: 75  VLVPDGDLARARMQLAAKGV-VAQLPAGLELLDKNDPLGVSQFVQDVRFRRGLEGELVQS 133

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLVAAAV 199
           IQ++  + +ARVH+ +P   SF   G    ++ ++  + P    S+E   A+  LVA +V
Sbjct: 134 IQALDPVRSARVHLSLPRSTSFVTAGGEKGSASVVVTLKPGQQLSSEQIAAVVKLVAGSV 193

Query: 200 PNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDN 257
            +LD   VT++D  G LL+A  +  +  I G +    +  + E   N    L   LG  N
Sbjct: 194 ASLDPSQVTLVDQAGNLLSAHVDLSDGGIAGNNSEAARRFRDEALQNARDLLTPALGAGN 253

Query: 258 FRSAVVAELNMD-TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVS 316
           F+ +V A+++ D  ++ RE       K   + +++ +A R ETS    A+ V  ++   S
Sbjct: 254 FKVSVTADVDNDRVEETRE-------KYGEAPKVTNEASREETSTERMALGVPGSL---S 303

Query: 317 DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK------------LERLSIAVVVN 364
           +R V       NTD     ++   N+K+  T    Y             L RLS+AV +N
Sbjct: 304 NRPV-------NTDSSSPAADKAGNSKNAVTRQYAYDRNITNIKRARGTLRRLSVAVALN 356

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           +            +G   + LA I+K++    GIN+ RGD + ++++ F +
Sbjct: 357 QA------AAPGGKGWQPAELANIDKLLRNGLGINAERGDVLAVSTLRFAQ 401


>gi|237752970|ref|ZP_04583450.1| flagellar basal-body m-ring protein flif [Helicobacter winghamensis
           ATCC BAA-430]
 gi|229375237|gb|EEO25328.1| flagellar basal-body m-ring protein flif [Helicobacter winghamensis
           ATCC BAA-430]
          Length = 572

 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 137/487 (28%), Positives = 246/487 (50%), Gaps = 56/487 (11%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNS---------PHYDNLY 52
           A+ +Q+   +K      + +I+ILA++++V  + F++A    NS         P Y  L+
Sbjct: 5   ALFEQIRNLYKKLNK--KQKIVILATIVVV--VGFISALIVWNSTSNKTGILYPGYAVLF 60

Query: 53  VKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYE 112
             +   D   I   L +  I ++I  + ++I +P   V + R+ LA+ G+P SS   G+E
Sbjct: 61  EGVSPEDGALIIQQLQQDKIPYKIPKD-NTILIPQEFVYEERMKLASNGIPKSSK-IGFE 118

Query: 113 LFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPT 172
           +FD    FG T F Q I  +RA+EGE+ARTI+S++ I  A VH+  P+   F      PT
Sbjct: 119 IFD-TKDFGATDFDQRIKYLRAIEGELARTIESLAPIQKATVHLAQPEKTVFISEQTPPT 177

Query: 173 ASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL 227
           ASV++     + + P   K    I+++V++AVPNL + +V V++  G+ L+  E++    
Sbjct: 178 ASVVLVFKPAQTLTP---KQISGIKNIVSSAVPNLTIQNVEVVNEKGEPLS--ELDELGG 232

Query: 228 GKSLSIVQA-----IQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPD 281
            + L++ Q       +H +E  I   L+    G +   + V AE +   ++  +  YDP+
Sbjct: 233 ARELAVAQLRYKTDFEHALEEKIVNILSPIAGGREGVVAKVTAEFDFAQKESTQEYYDPN 292

Query: 282 SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEE------Q 335
           + V RSI+  +  ++ E  +P+    V    P V     P+ + LE+ + KE+       
Sbjct: 293 NVV-RSIQDLE--EKREGFRPKEIGGV----PGVVSNIGPV-QGLEDDNTKEKYEKTQNT 344

Query: 336 SNYEINTKSIATTHDNY-KLERLSIAVVVNKGRLTEVLGRSADQGKI----DSYLAEINK 390
           +N+EI +K+I+     +  + RLS AVVV+     E+     +Q K     +  + +I+ 
Sbjct: 345 TNFEI-SKTISNIKGEFATIRRLSAAVVVDGRYEKELNEEGVEQLKYIALNEEDMTKISA 403

Query: 391 IVSAATGINSRRGDTITITSMDFLENQL--FNSGTVQVSFMDILSRHFATVINALVF-LV 447
           +V  A G N++RGD +++++   L  QL  F + T    F++  ++     +  L + LV
Sbjct: 404 LVRQAIGYNNQRGDEVSVSNFQ-LNGQLSGFKARTPLERFLEASAKLLEPFMPLLKYVLV 462

Query: 448 GTLLVTF 454
           G +L  F
Sbjct: 463 GIILFFF 469


>gi|224418248|ref|ZP_03656254.1| flagellar MS-ring protein [Helicobacter canadensis MIT 98-5491]
 gi|253827573|ref|ZP_04870458.1| flagellar M-ring protein [Helicobacter canadensis MIT 98-5491]
 gi|313141781|ref|ZP_07803974.1| flagellar basal-body m-ring protein flif [Helicobacter canadensis
           MIT 98-5491]
 gi|253510979|gb|EES89638.1| flagellar M-ring protein [Helicobacter canadensis MIT 98-5491]
 gi|313130812|gb|EFR48429.1| flagellar basal-body m-ring protein flif [Helicobacter canadensis
           MIT 98-5491]
          Length = 576

 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 133/482 (27%), Positives = 236/482 (48%), Gaps = 46/482 (9%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNS---------PHYDNLY 52
           A+ +Q+   +K      + +I+ILA++  V I+ F++     NS         P Y  L+
Sbjct: 5   ALFEQIRNLYKRLNK--KQKIVILATI--VAIVAFISGLIVWNSMNNKAGVMYPGYAVLF 60

Query: 53  VKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYE 112
             +   D   I   L +  I ++I  + ++I +P  +V + R+ LA+ G+P SS   G+E
Sbjct: 61  EGVSPEDGALIIQQLQQDKIPYQIPKD-NTILIPQELVYEQRMKLASNGIPKSSK-VGFE 118

Query: 113 LFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPT 172
           +FD    FG T F Q +  +RA+EGE+ARTI+S+S I  A VHI  P+   F      PT
Sbjct: 119 IFD-TQDFGATDFDQRVKYLRAIEGELARTIESLSPIQKATVHIAQPEKSVFVSEQTPPT 177

Query: 173 ASVMIRAINPS---VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEM--ERNI 226
           ASV++ A  P      K    I+++V++A+PNL + +V V++  G+ L+  +E+   R +
Sbjct: 178 ASVVL-AFKPGQTLTPKQISGIKNIVSSAIPNLTIENVEVVNEKGEPLSELDELGGAREL 236

Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGV-DNFRSAVVAELNMDTQQIREIVYDPDSKVE 285
               L      +  +E  I   LA   G  +   + V AE +   ++  +  YDP++ V 
Sbjct: 237 AAAQLRYKNNFEQSLEEKIINILAPIAGGREGVVAKVTAEFDFAQKESTQEYYDPNNVVR 296

Query: 286 RSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKE--EQS----NYE 339
               L    ++ E S+P+    V    P V     P+ + LE+ + +E  E+S    NYE
Sbjct: 297 SEQNLE---EKREGSKPKEIGGV----PGVVSNIGPV-QGLEDENNRERYEKSQTTTNYE 348

Query: 340 INTKSIATTHDNY-KLERLSIAVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSA 394
           + +K+I+     +  + RLS AVVV+     ++     +Q +     +S + +I+ +V  
Sbjct: 349 V-SKTISNIKGEFATIRRLSAAVVVDGKYQKQIDENGIEQLQYTALNESEMQQISALVRQ 407

Query: 395 ATGINSRRGDTITITSMDF-LENQLFNSGTVQVSFMDILSRHFATVINALVF-LVGTLLV 452
           A G N +RGD +++++     ++  F + T    F++         +  L + +VG +L 
Sbjct: 408 AIGFNEQRGDEVSVSNFQLNGQDSGFKARTPLERFLETAQNLLTPFMPLLKYVIVGIILF 467

Query: 453 TF 454
            F
Sbjct: 468 LF 469


>gi|226944512|ref|YP_002799585.1| flagellar M-ring protein [Azotobacter vinelandii DJ]
 gi|226719439|gb|ACO78610.1| flagellar M-ring protein [Azotobacter vinelandii DJ]
          Length = 576

 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 82/243 (33%), Positives = 130/243 (53%), Gaps = 10/243 (4%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSS 105
           P Y  L+  L+ +D  RI   L    I +R+S+ G S+ VP+  +   R+ LA QGLP  
Sbjct: 56  PEYRVLFANLDEADGGRIIGELDRRAIPYRLSEGGHSLLVPADQLHTLRLQLAEQGLPQG 115

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
             N G+EL DK  +FG++ F ++I   R LEGE+AR+I+S+  +  ARVH+ M     F 
Sbjct: 116 G-NVGFELLDK-QAFGVSQFAEQINFQRGLEGELARSIESLGPVSRARVHLAMAKQSVFV 173

Query: 166 KIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN 220
           +      ASV++     R +  S      AI HLV+++VP L +  VTV+D  G+LL+  
Sbjct: 174 REREPARASVVLNLQPGRELGES---QVNAIAHLVSSSVPGLSIDAVTVVDQNGRLLSRQ 230

Query: 221 EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP 280
              R++ G  L  +  ++   +  I   LA  LG  N R+ VVA+++  +++     Y P
Sbjct: 231 GGARDLDGTQLDYIDEVERSYQRRIENILAPILGAQNVRAQVVAQIDFASREQTAERYAP 290

Query: 281 DSK 283
           + +
Sbjct: 291 NQQ 293


>gi|288573030|ref|ZP_06391387.1| flagellar M-ring protein FliF [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288568771|gb|EFC90328.1| flagellar M-ring protein FliF [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 497

 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 117/390 (30%), Positives = 183/390 (46%), Gaps = 50/390 (12%)

Query: 48  YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           ++ L+  LE+ D   I   L E  I +R+    ++I +P   V + R+ LA  GLP    
Sbjct: 23  WEPLFSGLEIQDEASIVAYLKENKIPYRLDPGANAILLPEEHVYEVRLELARAGLPKGGV 82

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
             GYE+FD V   G++ F Q+IT VRALEGE+ART+  I  +  A+++IV+P    F + 
Sbjct: 83  K-GYEIFDDVQ-MGMSEFQQKITYVRALEGELARTVAQIDSVEYAKINIVIPQPHLFLEQ 140

Query: 168 GARPTASVMIR-----AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM 222
               TASV++R     +INP   K   AI HLV+ +V  L   DVTV+D+ G +L+ + +
Sbjct: 141 QQPATASVLVRIHQGASINPEQIK---AIVHLVSHSVEGLQPDDVTVVDTDGNVLS-DLI 196

Query: 223 ERNIL------GKSLSIVQ-----AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ 271
           E ++       G+++S VQ       + E+E  +   L    G  +    +  +L++D +
Sbjct: 197 EDDMFIYSDGAGRTVSSVQRELERQQEKEMERKVRAMLERVFGPGSVVVRIKVDLDLDKK 256

Query: 272 QIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT-- 329
           +     Y P           K   RSE +  ES V               +P    +T  
Sbjct: 257 RNASTQYIPGPT-------GKGVVRSEQNTEESYVGPGGPTGGAPGTTTNIPGYAIDTGA 309

Query: 330 ------DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS 383
                 +K +  +NYEI T           + RL+ +V+V+ G L+E             
Sbjct: 310 GGVGEYNKTDTVTNYEITTHESENVETPGSIRRLTASVLVD-GDLSE------------E 356

Query: 384 YLAEINKIVSAATGINSRRGDTITITSMDF 413
            L +I  +V+ A G++S RGD I I SM F
Sbjct: 357 QLEDIRALVAPAIGLDSGRGDQIAIQSMKF 386


>gi|311105960|ref|YP_003978813.1| flagellar M-ring protein FliF [Achromobacter xylosoxidans A8]
 gi|310760649|gb|ADP16098.1| flagellar M-ring protein FliF [Achromobacter xylosoxidans A8]
          Length = 553

 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 129/466 (27%), Positives = 216/466 (46%), Gaps = 70/466 (15%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            + + P Y  L+  L+  D   I  AL   N+ +R ++ G+++ VP+  V  AR+ LA+Q
Sbjct: 45  MWSSEPKYKVLFSNLDDRDGGAIVAALGTMNVPYRYNETGTAVLVPADRVYDARLQLASQ 104

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   S  G+EL D    FG + F ++I   R LEGE+AR+I+++  +  ARVH+ MP 
Sbjct: 105 GLPRGGS-VGFELMDNAR-FGASQFTEQINYQRGLEGELARSIEAMHTVQHARVHLAMPR 162

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS---AEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
              F +    PTASV++  ++P    S     AI  LVA++VP L   +V+++D  G+LL
Sbjct: 163 QSLFVRERQAPTASVLLN-MHPGRSLSDAQVSAISWLVASSVPELTAENVSIVDQNGRLL 221

Query: 218 TANEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           +A   E R +    +  V+ ++      I   L   +G  N  +   A+++   ++    
Sbjct: 222 SAPMGEGRGMDADQMRFVREMEQRTVERILTILNPLVGPGNVHAQASADVDFARREETSE 281

Query: 277 VYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPL-PRS-LEN------ 328
           VY P+ +  ++   S+  Q S++SQ    V   Q +P     + P  P++ + N      
Sbjct: 282 VYRPNQEPGQAAVRSQ--QTSDSSQ--RGVNAAQGVPGALSNQAPANPQAPIANPPQPQP 337

Query: 329 -------------------------TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
                                     ++++  +NYE++            L+RLS+AVVV
Sbjct: 338 PRPGQPQQPANAQQQTSTQAATGNLNERRDATTNYEVDRTISHIKQPVGNLKRLSVAVVV 397

Query: 364 NKGRLTEVLGRSADQGKIDSYLA-EINK---IVSAATGINSRRGDTITITSMDFLENQLF 419
           N  R  +        G++      E+NK   +V  A G +  RGD++ +       N  F
Sbjct: 398 NYMRDKD--------GELQPLPPEELNKLTNLVREAMGYSEPRGDSLNLV------NSQF 443

Query: 420 NSGTVQVSFM---DILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           N G   V      +++S  F T+   L +LVG +L  +L    LRR
Sbjct: 444 NDGPPPVPMWRDPEMIS-LFKTI---LAWLVGGVLALWL-YRLLRR 484


>gi|311695217|gb|ADP98090.1| flagellar MS-ring protein [marine bacterium HP15]
          Length = 569

 Score =  134 bits (336), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 98/401 (24%), Positives = 192/401 (47%), Gaps = 22/401 (5%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92
           + L +A   +   P+Y  +   L   +   ++  L    ID+++     ++ VPS  V  
Sbjct: 51  VALGLAVVLWAQEPNYQPVVGDLSSYNPQDVTTILESNGIDYKMDPRTGALLVPSDQVYN 110

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
           AR+ LAA+G+ +     GYEL D+    G + FM+ I+  R LEGE+ART+ S+ G+  A
Sbjct: 111 ARLKLAAEGV-TDRQTMGYELLDQERGLGTSQFMETISYRRGLEGELARTVASMRGVRNA 169

Query: 153 RVHIVMPDMGSFRKIGARPTASVMIR--AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
           RVH+ +P+   F +    P+ASV +   A      +   AI +LVA +VP +    VTV+
Sbjct: 170 RVHLAIPERSVFVRDARDPSASVFLEVFAGRRPEQEQINAIVNLVAGSVPMMSKEHVTVV 229

Query: 211 DSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM 268
           D  G LLT  + +     +         ++  +   +   +   +G   +R+ V A+L+ 
Sbjct: 230 DQNGNLLTGKQSQSGADQMADQYEYTAKVEERLTRRVASLIGPIVGDGRYRAEVSADLDF 289

Query: 269 DTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ-----------PESAVTVEQNMPHVSD 317
            + +  E +++P+ +  RS R   + +R+  +Q           P +A   EQ      +
Sbjct: 290 SSVEQAEELFNPEQQAVRSERELTE-RRTAGAQGGIPGALANQPPANATVPEQAAGGDGE 348

Query: 318 RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSA 376
           +  P P ++    + E   NYE++        +  +++R+++A+ V+  ++ +   G  +
Sbjct: 349 QAAPAPVNV----RSESTRNYEMDRTVSYRRQELGRVKRVTVALAVDDMKVVDPQTGEVS 404

Query: 377 DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
            +   +  L  ++ +V  A G ++ RGD++T+ +  F + +
Sbjct: 405 YEPWPEQELQRLSMLVRDAVGYSAARGDSVTVMNTAFAQEE 445


>gi|126734120|ref|ZP_01749867.1| flagellar M-ring protein FliF, putative [Roseobacter sp. CCS2]
 gi|126716986|gb|EBA13850.1| flagellar M-ring protein FliF, putative [Roseobacter sp. CCS2]
          Length = 526

 Score =  134 bits (336), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 117/391 (29%), Positives = 189/391 (48%), Gaps = 17/391 (4%)

Query: 28  VILVPIMLFMAARFFVNSPHYDN---LYVKLEVSDVNRISVALSEANIDFRISDNGSSIS 84
           +I+V  ++FMA           +   L+  LE      +  AL +  + + +   G++I 
Sbjct: 19  LIVVTGVVFMAVLLLARGAGTKDMSLLFGGLEPRAAGDVVTALDQQGVAYEV--RGNAIY 76

Query: 85  VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144
           VP+      R+ LA QGLP++ S  GYEL D ++ F  T+ M +    RA EGE+ARTI 
Sbjct: 77  VPTVQRDGLRMALAGQGLPATGSQ-GYELLDSLSGFSTTAQMFDAAYWRAKEGELARTIV 135

Query: 145 SISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDM 204
           +   I AARVHI  P    F+   ++  A  +  A      +  +A++ L+ AAVP L  
Sbjct: 136 ASPHIRAARVHISTPSQRPFQAAQSQTAAVTVTMAGTTLSTQHLKALQFLIGAAVPGLSP 195

Query: 205 GDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQH--EIEMNINKALAAFLGVDNFRSAV 262
            DV V+D  G LL+  E + N  G     +    H   +     + LAA +GV N    V
Sbjct: 196 ADVAVIDDEGGLLS--EADTNSAG-----MNGDNHAENLRKRAERLLAARVGVGNAVVEV 248

Query: 263 VAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPL 322
             +  ++T+ I E   DPDS++  S  +++ +  S  S+    VTV  N+P         
Sbjct: 249 SVDQVLETEMITERRVDPDSRIAISTDVTESSGNSTDSR-GGDVTVASNLPDGDAGARSG 307

Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382
             S EN++ +   +NYE++      T     + RL++AV+VN    T   G +    + +
Sbjct: 308 SASNENSESR-TLTNYEVSQTERQLTKAPGAIRRLTVAVLVNDLVDTAADGTTTTTPRTE 366

Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413
             LA +  +V++A G++  RGD +T+ SM F
Sbjct: 367 GELAALEDLVASAVGLDVDRGDVLTLRSMPF 397


>gi|167574616|ref|ZP_02367490.1| flagellar MS-ring protein [Burkholderia oklahomensis C6786]
          Length = 448

 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 110/380 (28%), Positives = 193/380 (50%), Gaps = 34/380 (8%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
           +Y  ++   E   + +++  L    I +RI  +   + VP + + +AR+ LAA+G+ +  
Sbjct: 24  NYKPVFGAREPVQLGQLASVLDGERIPYRIHPDTGQVLVPRADLARARMILAARGV-TGQ 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
              G E  D+ +  G + F+Q++   R LE E+A+++ ++  +  ARVH+ +    SF  
Sbjct: 83  PAPGLEQIDRDDPLGTSQFVQDVRFRRGLESELAQSVMTMEAVEKARVHLSIAKSSSFVM 142

Query: 167 I-GARPTASVMIRAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM 222
           + G + +ASVM+  + P      E   AI +LVA +VPNL    V+V+D TG  L+A   
Sbjct: 143 MDGEKSSASVML-TLKPGRRLGKEQIAAILNLVAGSVPNLAPSRVSVVDQTGAFLSARVD 201

Query: 223 ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPD 281
             +  G         + E   ++   LA  LG+DNFR +V A +N D  +++RE      
Sbjct: 202 LDDDFGDGNDAAARFRDETIRSVQDLLAPTLGIDNFRVSVTAAVNNDRVEEMRE------ 255

Query: 282 SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEE------Q 335
            +   + +++ +A R E ++   A+ V  ++   S+R V  P S    D   +      Q
Sbjct: 256 -QFGEAPKVTNEATRDEQNRDRIALGVPGSL---SNRPVDAPASAPQADDGVQRHATTRQ 311

Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR--SADQGKIDSYLAEINKIVS 393
             Y+ N   I   H   +LE+LS+AVV+N   ++   G+  SA+Q      LA I +I+ 
Sbjct: 312 YAYDRNVTQI--KHSRGRLEKLSVAVVLNNA-VSPAKGKPWSAEQ------LAHIEQILR 362

Query: 394 AATGINSRRGDTITITSMDF 413
              GI+++RGD + ++S+DF
Sbjct: 363 NGLGIDAQRGDQLVVSSLDF 382


>gi|119715006|ref|YP_921971.1| flagellar M-ring protein FliF [Nocardioides sp. JS614]
 gi|119535667|gb|ABL80284.1| flagellar M-ring protein FliF [Nocardioides sp. JS614]
          Length = 531

 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 88/275 (32%), Positives = 140/275 (50%), Gaps = 13/275 (4%)

Query: 16  SLGRTRILIL--ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73
           +LG+  + ++  A+++L   M+F     +V++P Y  LY  L  SD + I   L      
Sbjct: 20  TLGQQVVSVIGTAAILLAAFMVFR----WVSTPDYAPLYSNLAASDASAIVDELDSQGTP 75

Query: 74  FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
           +++++ GS++ VP   V   RI L+ QGLP  SS  GY L D       + F ++    R
Sbjct: 76  YKLANGGSTVMVPRDSVYATRISLSGQGLPEQSSGQGYSLLDN-QDISTSEFQEQTDFKR 134

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEAI 191
           A+EGE+A TI+++ G+  A VH+ +P    F      PTASV+I     + +  +  +AI
Sbjct: 135 AMEGELASTIEAVDGVTTAVVHLALPPAKVFSDQQDPPTASVLIDTAAGTTFNAEQVQAI 194

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL--SIVQAIQHEIEMNINKAL 249
            HLVA+++  LD  +VTV DS+GK+L++++     LG S     V + Q +    I   L
Sbjct: 195 VHLVASSIDGLDPDNVTVADSSGKVLSSSDA--GALGASTRDQQVTSFQQQTSQRIQSML 252

Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV 284
              LG  N    V A+L+ D        Y   +KV
Sbjct: 253 DRVLGPGNSTVQVTADLDFDKSVSESTTYGKSNKV 287


>gi|94314180|ref|YP_587389.1| flagellar MS-ring protein [Cupriavidus metallidurans CH34]
 gi|93358032|gb|ABF12120.1| flagellar MS-ring protein [Cupriavidus metallidurans CH34]
          Length = 563

 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 141/264 (53%), Gaps = 19/264 (7%)

Query: 31  VPIMLFMAAR--------FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           +P+ML  AA          +  +P Y  LY  L   D   +  +L + N+ ++ ++ G +
Sbjct: 23  LPMMLGGAALVAAIAVGVMWSRAPDYKVLYSNLSERDGGAVIQSLQQMNVPYKFAEGGGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           + VP+  V + R+ LA+QGLP S + +G EL D    FG++ F +++   R LEGE+AR+
Sbjct: 83  VMVPADKVAETRLRLASQGLPKSGT-TGMELMDN-QKFGISQFAEQVNYQRGLEGELARS 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAA 197
           I+SI  + +ARVH+ +P    F +   +PTASV++     RA++        AI HLV++
Sbjct: 141 IESIGAVQSARVHLAIPKPTLFVRERQKPTASVVLQLYPGRAVDEG---QVAAITHLVSS 197

Query: 198 AVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDN 257
           +VP L    ++++D  G LL+    +R++    L  VQ ++      +   LA  LG DN
Sbjct: 198 SVPELTPKSISIVDQQGNLLSGTN-DRSLDASQLKYVQQVEQGYVKRVESILAPILGKDN 256

Query: 258 FRSAVVAELNMDTQQIREIVYDPD 281
             + V A+++  + +  +  Y P+
Sbjct: 257 IHAQVTADVDFSSVEHTDESYKPN 280


>gi|213622939|ref|ZP_03375722.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 344

 Score =  133 bits (335), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 83/264 (31%), Positives = 139/264 (52%), Gaps = 11/264 (4%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 44  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 103

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 104 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 161

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    P+ASV +     RA++        A+ HLV++AV  L  G+VT++D +G 
Sbjct: 162 PSLFVREQKSPSASVTVTLEPGRALD---EGQISAVVHLVSSAVAGLPPGNVTLVDQSGH 218

Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  
Sbjct: 219 LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQT 278

Query: 275 EIVYDPDSKVERSIRLSKDAQRSE 298
           E  Y P+    ++   S+    SE
Sbjct: 279 EEHYSPNGDASKATLRSRQLNISE 302


>gi|167567191|ref|ZP_02360107.1| flagellar MS-ring protein [Burkholderia oklahomensis EO147]
          Length = 441

 Score =  133 bits (335), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 110/380 (28%), Positives = 193/380 (50%), Gaps = 34/380 (8%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
           +Y  ++   E   + +++  L    I +RI  +   + VP + + +AR+ LAA+G+ +  
Sbjct: 24  NYKPVFGAREPVQLGQLASVLDGERIPYRIHPDTGQVLVPRADLARARMILAARGV-TGQ 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
              G E  D+ +  G + F+Q++   R LE E+A+++ ++  +  ARVH+ +    SF  
Sbjct: 83  PAPGLEQIDRDDPLGTSQFVQDVRFRRGLESELAQSVMTMEAVEKARVHLSIAKSSSFVM 142

Query: 167 I-GARPTASVMIRAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM 222
           + G + +ASVM+  + P      E   AI +LVA +VPNL    V+V+D TG  L+A   
Sbjct: 143 MDGEKSSASVML-TLKPGRRLGKEQIAAILNLVAGSVPNLAPSRVSVVDQTGAFLSARVD 201

Query: 223 ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPD 281
             +  G         + E   ++   LA  LG+DNFR +V A +N D  +++RE      
Sbjct: 202 LDDDFGDGNDAAARFRDETIRSVQDLLAPTLGIDNFRVSVTAGVNNDRVEEMRE------ 255

Query: 282 SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEE------Q 335
            +   + +++ +A R E ++   A+ V  ++   S+R V  P S    D   +      Q
Sbjct: 256 -QFGEAPKVTNEATRDEQNRDRIALGVPGSL---SNRPVDAPASAPQADGGVQRHATTRQ 311

Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR--SADQGKIDSYLAEINKIVS 393
             Y+ N   I   H   +LE+LS+AVV+N   ++   G+  SA+Q      LA I +I+ 
Sbjct: 312 YAYDRNVTQI--KHSRGRLEKLSVAVVLNNA-VSPAKGKPWSAEQ------LAHIEQILR 362

Query: 394 AATGINSRRGDTITITSMDF 413
              GI+++RGD + ++S+DF
Sbjct: 363 NGLGIDAQRGDQLVVSSLDF 382


>gi|225871927|ref|YP_002753381.1| flagellar M-ring protein FliF [Acidobacterium capsulatum ATCC
           51196]
 gi|225792578|gb|ACO32668.1| flagellar M-ring protein FliF [Acidobacterium capsulatum ATCC
           51196]
          Length = 534

 Score =  133 bits (335), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 109/380 (28%), Positives = 192/380 (50%), Gaps = 21/380 (5%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           ++     +  LY  L   D   ++  L+ A I F +S +G+++ VP+  + KAR+ + A 
Sbjct: 53  WYGTRTDWRTLYAGLNPDDARTMAGQLTTAGIPFEVSPDGTALEVPAPDLDKARLTVTAG 112

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           G P SS   G+ LFDK N  G + F +++   RALEGE+ +TI ++  + ++RV++VMP 
Sbjct: 113 GGP-SSGRMGFALFDKPNWVG-SDFDEQVNYQRALEGELEQTIDTLEDVRSSRVNLVMPH 170

Query: 161 MGSFRKIGARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
              F        ASV++R  + ++  + A+AIR+LVAAAV  L   +V ++ + G     
Sbjct: 171 DSLFTSEQRAAKASVVLRLKHRTLSEEEAQAIRNLVAAAVDGLTPANVVLVSANG----- 225

Query: 220 NEMERNILGK-SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
            E +    G+ +L + Q  +  +   +   L    G+ N  +AV  + +  T    + +Y
Sbjct: 226 -EDQFGAHGQNALELAQ--EQALTQQVIGTLQPVAGLGNVHAAVHMDFDTATTSETDEIY 282

Query: 279 DPDSKVERSIRLSKDAQRSETSQPESA--VTVEQNMPHV-SDRKVPL--PRSLENTDKKE 333
           +P+     S++ S    +S  SQP +A       N P+  +  K PL  P++    + +E
Sbjct: 283 NPNQTATLSMQRST---QSTGSQPVAAGVPGAASNAPNSNATGKPPLYPPQATGQQNSQE 339

Query: 334 EQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVS 393
           E S Y ++ K         KL RL++AVV+N+  + +   +   Q +  + +  + ++V 
Sbjct: 340 ESSTYGVSKKIEHRAQGPGKLNRLTVAVVLNEPWVMQGK-KKVWQPRSAAEMQRLTQLVQ 398

Query: 394 AATGINSRRGDTITITSMDF 413
           AA G N  RGD +T+  M F
Sbjct: 399 AAVGYNQARGDIVTVEQMPF 418


>gi|330809237|ref|YP_004353699.1| flagellar M-ring protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377345|gb|AEA68695.1| Putative Flagellar M-ring protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 458

 Score =  133 bits (334), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 104/393 (26%), Positives = 198/393 (50%), Gaps = 46/393 (11%)

Query: 18  GRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS 77
           GRTR+ ++ ++++V   L  A+ ++V  P Y  LY   + +   +I   LS+ ++ +RI+
Sbjct: 12  GRTRVFLIGALLIV--GLLAASAWWVLRPQYVALYRNADEASQAQILATLSQRHVPYRIN 69

Query: 78  DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137
               +I V +     AR++LA  G+P+    +G+ELFDK + +G++ F Q+I   RA+EG
Sbjct: 70  TQQGAIEVLADHAASARMYLAEAGIPTRG-GTGFELFDKAD-YGMSEFSQKINYQRAMEG 127

Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI--RAINPSVYKSAEAIRHLV 195
           E+ARTI S+S +  ARVH+       +++    P ASV++  R+    + +    I+ LV
Sbjct: 128 ELARTIMSMSEVEYARVHLTFKKTSLYQQAEEPPKASVIVRLRSAGTLMPQRVRGIQQLV 187

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255
           ++AV  + +  V+VL+  G++L+A++       + L +   ++  +++   + LA  LG 
Sbjct: 188 SSAVEGMTLERVSVLNEDGQVLSASDGA-AAAPEHLQLTAQVEQVLKLKAEELLARPLGH 246

Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV 315
                +V   +N D  +++ I   P   +   +R  K  + +E S  ES     QN    
Sbjct: 247 RGVDVSVRVLMNFD--RVKSISEQP---LTNKMRREKRTESTENSNGESTSKRSQN---- 297

Query: 316 SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS 375
            +R++                +YE+      T H   K+ER+++ VV++    T V    
Sbjct: 298 -NREI----------------DYEVGKARAETEHAAGKIERITVGVVLS----TPV---- 332

Query: 376 ADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
                 D+ + +I  ++ AA G++ +RGD + +
Sbjct: 333 -----SDAQMKDIQALLEAALGLDLKRGDRLVM 360


>gi|120597294|ref|YP_961868.1| flagellar MS-ring protein [Shewanella sp. W3-18-1]
 gi|146294561|ref|YP_001184985.1| flagellar MS-ring protein [Shewanella putrefaciens CN-32]
 gi|120557387|gb|ABM23314.1| flagellar M-ring protein FliF [Shewanella sp. W3-18-1]
 gi|145566251|gb|ABP77186.1| flagellar M-ring protein FliF [Shewanella putrefaciens CN-32]
          Length = 558

 Score =  133 bits (334), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 112/391 (28%), Positives = 185/391 (47%), Gaps = 43/391 (10%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +  Y  LY   E  D +++   L    I +R+  N  ++ V    VG AR+ LAA+
Sbjct: 57  LWTATAGYRPLYGSQENVDTSQVLNVLEAEGIHYRLEANTGAVLVAEEQVGNARMLLAAK 116

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           G+ +    SG E  D  N+ G + FM++     +LEGE+ARTI S+  + AARVH+ +P 
Sbjct: 117 GVKAKVP-SGMEALDN-NALGTSQFMEQAKYRHSLEGELARTIMSLKLVRAARVHLAIPK 174

Query: 161 MGSF-RKIGARPTASVMIRAINPSVYKS---AEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
              F R+    PTASVM++ ++P+   S    EAI +LVA +V  L   ++ V+D  G+ 
Sbjct: 175 QSLFIRQEPELPTASVMLQ-LDPNTRLSESQVEAIVNLVAGSVTGLTASNIKVVDQDGRY 233

Query: 217 LTAN-------EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
           L+ N          RN   K L   + ++H +  N    L   LG DNF+  V A++N +
Sbjct: 234 LSENISGNQDLSQSRN---KQLQYTRELEHSLVANAASMLEPVLGHDNFQVRVTAKVNFN 290

Query: 270 TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT 329
             +  +   DP + V           +  TS  +S+ ++   +P     K P   +    
Sbjct: 291 QVEETKESLDPQNVVT----------QERTSIDDSSNSIAAGIPGALSNKPPQVGTAATD 340

Query: 330 D-----KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI--D 382
           D     K+EE   Y++        +   +LE LS++V++N          +A QG    +
Sbjct: 341 DKTRNLKQEESRQYDVGRSVRHVRYQQMQLENLSVSVLINS---------AAGQGVFNNE 391

Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413
           + L +   +V  A G ++ RGD+ TI + +F
Sbjct: 392 AQLVKFGNMVKDAIGFSAARGDSFTINAFEF 422


>gi|293605027|ref|ZP_06687421.1| flagellar M-ring protein FliF [Achromobacter piechaudii ATCC 43553]
 gi|292816576|gb|EFF75663.1| flagellar M-ring protein FliF [Achromobacter piechaudii ATCC 43553]
          Length = 558

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 121/452 (26%), Positives = 196/452 (43%), Gaps = 50/452 (11%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            + + P Y  L+  L+  D   I  AL   N+ +R ++ G+++ VP+  V  AR+ LA+Q
Sbjct: 45  MWTSEPKYKVLFSNLDDRDGGAIVTALGTMNVPYRYNETGTALLVPADRVYDARLQLASQ 104

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   S  G+EL D    FG + F ++I   R LEGE+AR+I+++  +  ARVH+ MP 
Sbjct: 105 GLPRGGS-VGFELMDNAR-FGASQFAEQINYQRGLEGELARSIEAMHTVQHARVHLAMPR 162

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    PTASV++          A+  AI  LVA++VP L   +V+++D  G+LL+
Sbjct: 163 QSLFVRERQAPTASVLLNVYPGRSMSDAQVSAISWLVASSVPELTAENVSIVDQNGRLLS 222

Query: 219 ANEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM----DTQQI 273
           A   E R +    +  V+ ++      I   L   +G  N  +   A+++     +T +I
Sbjct: 223 APLGEGRGMDADQMRFVREMEQRTVERILTILNPLVGPGNVHAQASADVDFARREETSEI 282

Query: 274 REIVYDPDSKVERSIRLSKDAQRS-----------ETSQPESAVTVEQNMPHVSDRKVPL 322
                +P     RS + S   QR                P +A     N P     +   
Sbjct: 283 YRPNQEPGQAAVRSQQTSDSTQRGVNPAQGVPGALSNQAPPNAQAPLANPPAAQPPRPGQ 342

Query: 323 PRSLEN-------------------TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
           P +  N                    ++++  +NYE++            L+RLS+AVVV
Sbjct: 343 PPAAANAQQQQQQQQTGTQAATANLNERRDATTNYEVDRTISHIKQPVGNLKRLSVAVVV 402

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           N  R  +       Q      L ++  +V  A G +  RGD++ +       N  FN G 
Sbjct: 403 NYIRDKD----GEPQALPPEELNKLTNLVREAMGYSETRGDSLNLV------NSQFNDGP 452

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFL 455
             +  M       A     L +LVG +L  +L
Sbjct: 453 PPLP-MWRDPEMIALFKTILAWLVGLVLAFWL 483


>gi|42524763|ref|NP_970143.1| flagellar M-ring protein [Bdellovibrio bacteriovorus HD100]
 gi|39576973|emb|CAE78202.1| flagellar M-ring protein [Bdellovibrio bacteriovorus HD100]
          Length = 549

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 117/430 (27%), Positives = 208/430 (48%), Gaps = 43/430 (10%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           Q  +FFK+   LG T+ L + +V ++  +      F  +   Y  L+  +    V+ I  
Sbjct: 11  QFREFFKN---LGPTKRLSVIAVTVIAAVALFTMLFMASGKDYVPLFTNIPTEQVSTIVG 67

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ-GLPSSSSNSGYELFDKVNSFGLTS 124
            L+E N+ F++ D G +I++P  ++   ++ L ++ G P   S  G E+FDK   FG+ S
Sbjct: 68  KLNEKNVPFQLRDGGKTIAIPKELLHSTQMTLMSEIGSPKMGS-IGLEIFDK-QDFGMNS 125

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RA 179
           + Q+I   RAL+GE+ R I +++ +  ++V + +P+  +F + G + +ASV++     + 
Sbjct: 126 YAQKINYQRALQGELMRAINTLTAVKQSKVILALPNKKTFLEEGGQASASVVVELHQGKE 185

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS---LSIVQA 236
           + P   +    +R+LVA +V  +D   VTVLD  GK+LT   +     G S   L +   
Sbjct: 186 LTP---EQVRGVRYLVANSVEGMDADKVTVLDERGKVLT--RVADGTTGGSNELLDLKAK 240

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           I+ ++E  I   L   +G     + V A LN       E   DPD    RS +  +++  
Sbjct: 241 IEGDLEDRIEDILTKVVGHAKVVAKVDATLNHRVISSVEESVDPDKTAIRSQQSEEESLD 300

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEI--NTKSIATTHDNYKL 354
              + P        N+P   D+     R  ++  K+ + +NY++    ++I  +  N  L
Sbjct: 301 GSRTNPAGVPGSRSNLPGAEDQGTVGFR--QDVKKEIKTTNYDVPKTVRNIRESAGN--L 356

Query: 355 ERLSIAVVVNKGRL-----------TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403
           ER+S+AVVV+ G +           T    RSA++      L +   +V  A G N+ RG
Sbjct: 357 ERVSVAVVVD-GMMTTTTKADGTTETTWKPRSAEE------LRKYEDLVKNAIGFNTARG 409

Query: 404 DTITITSMDF 413
           D++ I ++ F
Sbjct: 410 DSVKIENIQF 419


>gi|89069804|ref|ZP_01157139.1| putative flagellar M-ring protein [Oceanicola granulosus HTCC2516]
 gi|89044605|gb|EAR50721.1| putative flagellar M-ring protein [Oceanicola granulosus HTCC2516]
          Length = 514

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 119/371 (32%), Positives = 182/371 (49%), Gaps = 31/371 (8%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110
           LY  L+ +    +  AL      + +   GS I V S+     R+ LA +GLPS  +  G
Sbjct: 22  LYAGLDAAAAGEVVTALDTRGEVYEV--RGSGIYVESARRDLLRMTLAGEGLPSGGAQ-G 78

Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170
           YEL D ++ FG TS M +    RA EGE+ARTIQS  G+ A RVH+ +P    F++ G +
Sbjct: 79  YELLDSLSGFGTTSQMFDAAYWRAKEGELARTIQSSPGVRAVRVHVSVPANRGFQREG-Q 137

Query: 171 PTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK 229
           P A+V + +    +  + A+A RHLVA+AV  L   DV V+D +G           +   
Sbjct: 138 PAAAVTVTSAGGGLSAAQAKAFRHLVASAVTGLAPDDVAVIDESGL----------VAAA 187

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM----DTQQIREIVYDPDSKVE 285
             S   A Q E E  + + L   L         V ELN+    +T+QIRE  +DP+ +V 
Sbjct: 188 DDSSAPAAQGERERLMRERLQRLLEARVGHGNAVVELNIETETETEQIRERQFDPEGRVA 247

Query: 286 RSIRLSKD-AQRSET-SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTK 343
               +++D ++RSE+ S    AVTV  N+P   D       S     +  + +NYE++  
Sbjct: 248 ----IAEDVSERSESASGGTGAVTVASNLP---DGDAAGGGSESQASETRQLTNYEVSQV 300

Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEINKIVSAATGINSRR 402
                     + R+++AV++N     EV  G      + +  LA +  +V++A G +  R
Sbjct: 301 EREVLRAPGAVRRITVAVLIND--PVEVDSGVETATPRSEEELAVLRDLVASAVGFDEAR 358

Query: 403 GDTITITSMDF 413
           GD IT+ SM F
Sbjct: 359 GDVITLRSMPF 369


>gi|186896782|ref|YP_001873894.1| flagellar MS-ring protein [Yersinia pseudotuberculosis PB1/+]
 gi|186699808|gb|ACC90437.1| flagellar M-ring protein FliF [Yersinia pseudotuberculosis PB1/+]
          Length = 546

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 118/425 (27%), Positives = 210/425 (49%), Gaps = 36/425 (8%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +LD++ Q    G  LG     IL S + + +   +    + +S  Y  L+   E   + +
Sbjct: 1   MLDKIKQKLSPG-QLGENTKTILMSAVALLVTAAIIFSLWRSSQGYTALFGSQENIPITQ 59

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +   L    I +RI+ +   + V  + +GKARI LAA+G+ +++   GYEL DK +  G 
Sbjct: 60  VVEVLEGEAIAYRINPDNGQVLVAENQLGKARILLAAKGI-TATLPIGYELMDKESMLGS 118

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRAIN 181
           + F+Q +   R+LEGE+A+++ ++S +  ARVH+ M +  SF     A  +ASV++R   
Sbjct: 119 SQFIQNVRYKRSLEGELAQSMMALSAVEYARVHLGMSEASSFAISNHADNSASVVLRLRY 178

Query: 182 PSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQ 235
                + +  AI  LVA ++P +   +V V+D  G+LL+    AN      +     +  
Sbjct: 179 GQTLSTEQVGAIVQLVAGSIPGMKPANVRVVDQHGELLSQAYQANSEGVPSVKSGTELAH 238

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV--YDPDSKVERSIRLSKD 293
            +Q   E NI   L + +G +N+R +V  +L+M   +I E    Y PD       R++ +
Sbjct: 239 YLQSTTEKNIANLLNSVIGANNYRISVSTQLDMS--RIEETAEHYGPDP------RINDE 290

Query: 294 AQRSETSQPESAVTV-----EQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
             + E S  + A+ +      Q +P     + P   S     +K     Y+ N + +   
Sbjct: 291 NIQQENSNDDMAMGIPGSLSNQPIPQSQAGQTPAAVSRSQAQRK---YIYDRNIRHV--R 345

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
           +  YKLE++++AVV+NK  L  +   + +Q +      E+ +++  A GI+ +RGD++TI
Sbjct: 346 YPGYKLEKMTVAVVLNKS-LPVLEQWTPEQQE------ELKRLIEDAAGIDVKRGDSLTI 398

Query: 409 TSMDF 413
             M F
Sbjct: 399 NMMAF 403


>gi|149377888|ref|ZP_01895617.1| flagellar M-ring protein FliF [Marinobacter algicola DG893]
 gi|149357830|gb|EDM46323.1| flagellar M-ring protein FliF [Marinobacter algicola DG893]
          Length = 565

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 104/401 (25%), Positives = 193/401 (48%), Gaps = 30/401 (7%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92
           + L +A   +   P+Y  +   +   +   ++  L   +ID+R+     ++ VPS  V  
Sbjct: 51  VALGVAVVLWAQEPNYQPVVGDMSGYNPQDVTTILDANSIDYRMDPRTGALLVPSDEVYN 110

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
           AR+ LAA+G+ +     GYEL D+    G + FM+ I+  R LEGE+ARTI S+  + AA
Sbjct: 111 ARLKLAAEGV-TDEQTMGYELLDQDRGLGTSQFMETISFRRGLEGELARTIGSMRTVRAA 169

Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVL 210
           RVH+ +P+   F +    PTASV +  I     +  +  +I +LVA ++P +   +VTV+
Sbjct: 170 RVHLAIPERSVFVRDARTPTASVFLEVIAGRRLEQEQIASIVNLVAGSIPEMSKDNVTVV 229

Query: 211 DSTGKLLTANE--MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM 268
           D +G LLT  E   +   +         ++  +   +   +   +G   FR+ V A+L+ 
Sbjct: 230 DQSGNLLTGREDGGDSQQIEDQYDYTSRVEDRLARRVASMVRPVVGDGRFRAEVTADLDF 289

Query: 269 DTQQIREIVYDPDSKVERSIRLSKDAQRSE--------------TSQPESAVTVEQNMPH 314
            + +  E +++P+ +  RS R     Q SE              ++QP +  TV +    
Sbjct: 290 SSVEQAEELFNPEQQAVRSER-----QMSERRAGGGASGIPGALSNQPPAQPTVPEQATA 344

Query: 315 VSDRKVPLPRSLENTDKKEEQS-NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-L 372
             +  V  P      + +EE + NYE++        +  +++RLS+A+ V+  ++ +   
Sbjct: 345 DDEGNVQAP----PVNVREESTRNYEMDRTVSYIRQELGRIKRLSVALAVDDMKVVDPQT 400

Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           G  + +   +  L  +  +V  A G ++ RGD++T+ +  F
Sbjct: 401 GEVSYEPWPEQELQRLTMLVRDAVGYSAARGDSVTVMNTAF 441


>gi|332669190|ref|YP_004452198.1| flagellar M-ring protein FliF [Cellulomonas fimi ATCC 484]
 gi|332338228|gb|AEE44811.1| flagellar M-ring protein FliF [Cellulomonas fimi ATCC 484]
          Length = 535

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 120/419 (28%), Positives = 201/419 (47%), Gaps = 57/419 (13%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           RT  LI  +V+L   +   A   +++ P    L+  L  +D + +   L+ A + ++++D
Sbjct: 24  RTLGLIGVAVLL---LGAFALSTYLSRPTMSPLFSGLSGADASAVVDELTAAGVQYQLAD 80

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS--FMQEITRVRALE 136
            GS++ VP + +   RI LAA GLP+++   GY L D++    +TS  F Q+ T  RALE
Sbjct: 81  GGSTVLVPDAQLYDQRIRLAAAGLPTNADGGGYSLLDEMP---MTSSEFQQQTTYQRALE 137

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS---AEAIRH 193
           GE+ART+ +I G+ +A V + +P+   F    A PTASV IR   P    S    +AI H
Sbjct: 138 GELARTVGAIDGVESASVKLALPEESVFVSEKADPTASVFIR-TRPGTSLSLDQVQAIVH 196

Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE--IEMNINKALAA 251
           LV+A +  +   DV V+D+TG++L+A           ++  QA  +E  +  ++   L  
Sbjct: 197 LVSAGIDGMTPTDVAVVDATGEVLSAVGTGTT---GGVAGQQASDYEARVAASVQALLDP 253

Query: 252 FLGVDNFRSAVVAELNMDTQQ----IREIVYDPDSKVERSIRLSKDAQRSETSQPESAVT 307
            +G    RSAV     +D  Q    + E    PD+    S         S T++  +   
Sbjct: 254 LVG--PGRSAVTVTAEIDQSQTDRTVEEFTATPDTPPLAS---------STTTETYTGGA 302

Query: 308 VEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA---------TTHDNYKLERLS 358
                  +    + +P    N D    + +YE  T+ +          TT     ++R S
Sbjct: 303 ASGAAGVLGPDNIQVP----NGDGTTGEGSYESTTEDVTNAVNKSTERTTQGPGAIQRQS 358

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           +AVV+++        ++A    ID  LA++ + ++AA GI+  RGDTI + ++ F   Q
Sbjct: 359 VAVVLDE--------KAA--APID--LAQLRETIAAAAGIDPERGDTIAVQAVPFDTTQ 405


>gi|83589623|ref|YP_429632.1| flagellar MS-ring protein [Moorella thermoacetica ATCC 39073]
 gi|83572537|gb|ABC19089.1| flagellar M-ring protein FliF [Moorella thermoacetica ATCC 39073]
          Length = 524

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 103/378 (27%), Positives = 180/378 (47%), Gaps = 33/378 (8%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSS 105
           P Y  L+  ++  D   ++  L E  + +R++ +G++I VP   + + R+ LA+ G+   
Sbjct: 46  PQYAPLFTNMQQQDAAAVTAKLKEMKVPYRLTGDGTTIEVPKDQIYQLRLDLASAGV--L 103

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
           ++  G+ELFD+ N  G+T F + +   RAL+ E+ RTI ++  +  ARVH+V+P    F 
Sbjct: 104 NNGQGFELFDQ-NKLGMTDFERNLDYQRALQEELRRTIVTLDEVEDARVHLVIPQPSVFL 162

Query: 166 KIGARPTASVMIRAINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLL----- 217
           +    P+A+V+++ + P      E ++    L+AA+VP L + ++ V+D  G +L     
Sbjct: 163 QQQQPPSAAVVLK-LKPLARLKPEQVKGIMELIAASVPGLKLENIRVIDMYGNVLSDGVA 221

Query: 218 -TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
            +AN          + I +  + ++E  +   L   LG     + V A+LN D Q+I + 
Sbjct: 222 DSANAPLSQKQQTQMEIKRQFEKDLEQRLQSMLTQILGPGKAVAMVTADLNFDQQEINQT 281

Query: 277 VYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQS 336
            +     + RS  +  +   S       A T   N P        +  +  N +  +   
Sbjct: 282 TWGKQGAL-RSEEIKTEQGTSNGGAGGVAGTAGNNGPGYP----AVNPANGNYNTSDTVH 336

Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL-AEINKIVSAA 395
           NYE++     T     ++ RLS AV VN              G +++ L  +I +IVSAA
Sbjct: 337 NYELDKTDTHTIVAPGQVRRLSTAVAVN--------------GPVNAALNNQIQQIVSAA 382

Query: 396 TGINSRRGDTITITSMDF 413
            G    RGD IT+TS+ F
Sbjct: 383 VGYQPARGDQITVTSLAF 400


>gi|22127339|ref|NP_670762.1| flagellar MS-ring protein [Yersinia pestis KIM 10]
 gi|45442785|ref|NP_994324.1| flagellar MS-ring protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|108809069|ref|YP_652985.1| flagellar MS-ring protein [Yersinia pestis Antiqua]
 gi|108810737|ref|YP_646504.1| flagellar MS-ring protein [Yersinia pestis Nepal516]
 gi|145597806|ref|YP_001161882.1| flagellar MS-ring protein [Yersinia pestis Pestoides F]
 gi|150260260|ref|ZP_01916988.1| lateral flagellar M-ring protein [Yersinia pestis CA88-4125]
 gi|162418149|ref|YP_001604857.1| flagellar MS-ring protein [Yersinia pestis Angola]
 gi|165924858|ref|ZP_02220690.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165939096|ref|ZP_02227648.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166009035|ref|ZP_02229933.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166211925|ref|ZP_02237960.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167398942|ref|ZP_02304466.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167419368|ref|ZP_02311121.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167425084|ref|ZP_02316837.1| flagellar M-ring protein FliF [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|167466352|ref|ZP_02331056.1| flagellar M-ring protein FliF [Yersinia pestis FV-1]
 gi|170022960|ref|YP_001719465.1| flagellar MS-ring protein [Yersinia pseudotuberculosis YPIII]
 gi|218927901|ref|YP_002345776.1| flagellar MS-ring protein [Yersinia pestis CO92]
 gi|229837397|ref|ZP_04457560.1| Flagellar M-ring protein fliF [Yersinia pestis Pestoides A]
 gi|229840610|ref|ZP_04460769.1| Flagellar M-ring protein fliF [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229842839|ref|ZP_04462991.1| Flagellar M-ring protein fliF [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229900934|ref|ZP_04516058.1| Flagellar M-ring protein fliF [Yersinia pestis Nepal516]
 gi|270487684|ref|ZP_06204758.1| flagellar M-ring protein FliF [Yersinia pestis KIM D27]
 gi|294502778|ref|YP_003566840.1| flagellar M-ring protein [Yersinia pestis Z176003]
 gi|21960421|gb|AAM87013.1|AE013949_7 putative flagellar M ring protein [Yersinia pestis KIM 10]
 gi|45437651|gb|AAS63201.1| putative flagellar M-ring protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108774385|gb|ABG16904.1| flagellar M-ring protein [Yersinia pestis Nepal516]
 gi|108780982|gb|ABG15040.1| putative flagellar M-ring protein [Yersinia pestis Antiqua]
 gi|115346512|emb|CAL19388.1| putative flagellar M-ring protein [Yersinia pestis CO92]
 gi|145209502|gb|ABP38909.1| flagellar M-ring protein [Yersinia pestis Pestoides F]
 gi|149289668|gb|EDM39745.1| lateral flagellar M-ring protein [Yersinia pestis CA88-4125]
 gi|162350964|gb|ABX84912.1| flagellar M-ring protein FliF [Yersinia pestis Angola]
 gi|165913052|gb|EDR31677.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165923058|gb|EDR40209.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165992374|gb|EDR44675.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166206671|gb|EDR51151.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166963362|gb|EDR59383.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167051446|gb|EDR62854.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167055847|gb|EDR65628.1| flagellar M-ring protein FliF [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|169749494|gb|ACA67012.1| flagellar M-ring protein FliF [Yersinia pseudotuberculosis YPIII]
 gi|229682273|gb|EEO78365.1| Flagellar M-ring protein fliF [Yersinia pestis Nepal516]
 gi|229690106|gb|EEO82163.1| Flagellar M-ring protein fliF [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229696976|gb|EEO87023.1| Flagellar M-ring protein fliF [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229705520|gb|EEO91530.1| Flagellar M-ring protein fliF [Yersinia pestis Pestoides A]
 gi|262360810|gb|ACY57531.1| flagellar M-ring protein [Yersinia pestis D106004]
 gi|262364755|gb|ACY61312.1| flagellar M-ring protein [Yersinia pestis D182038]
 gi|270336188|gb|EFA46965.1| flagellar M-ring protein FliF [Yersinia pestis KIM D27]
 gi|294353237|gb|ADE63578.1| flagellar M-ring protein [Yersinia pestis Z176003]
 gi|320016722|gb|ADW00294.1| Flagellar M-ring protein fliF [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 546

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 118/425 (27%), Positives = 210/425 (49%), Gaps = 36/425 (8%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +LD++ Q    G  LG     IL S + + +   +    + +S  Y  L+   E   + +
Sbjct: 1   MLDKIKQKLSPG-QLGENTKTILMSAVALLVTAAIIFSLWRSSQGYTALFGSQENIPITQ 59

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +   L    I +RI+ +   + V  + +GKARI LAA+G+ +++   GYEL DK +  G 
Sbjct: 60  VVEVLEGEAIAYRINPDNGQVLVAENQLGKARILLAAKGI-TATLPIGYELMDKESMLGS 118

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRAIN 181
           + F+Q +   R+LEGE+A+++ ++S +  ARVH+ M +  SF     A  +ASV++R   
Sbjct: 119 SQFIQNVRYKRSLEGELAQSMMALSAVEYARVHLGMSEASSFAISNHADNSASVVLRLRY 178

Query: 182 PSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQ 235
                + +  AI  LVA ++P +   +V V+D  G+LL+    AN      +     +  
Sbjct: 179 GQTLSTEQVGAIVQLVAGSIPGMKPANVRVVDQHGELLSQAYQANSEGVPSVKSGTELAH 238

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV--YDPDSKVERSIRLSKD 293
            +Q   E NI   L + +G +N+R +V  +L+M   +I E    Y PD       R++ +
Sbjct: 239 YLQSTTEKNIANLLNSVIGANNYRISVSTQLDMS--RIEETAEHYGPDP------RINDE 290

Query: 294 AQRSETSQPESAVTV-----EQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
             + E S  + A+ +      Q +P     + P   S     +K     Y+ N + +   
Sbjct: 291 NIQQENSNDDMAMGIPGSLSNQPIPQSQAGQTPAAVSRSQAQRK---YIYDRNIRHV--R 345

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
           +  YKLE++++AVV+NK  L  +   + +Q +      E+ +++  A GI+ +RGD++TI
Sbjct: 346 YPGYKLEKMTVAVVLNKS-LPVLEQWTPEQQE------ELKRLIEDAAGIDVKRGDSLTI 398

Query: 409 TSMDF 413
             M F
Sbjct: 399 NMMAF 403


>gi|116619481|ref|YP_821637.1| flagellar M-ring protein FliF [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116222643|gb|ABJ81352.1| flagellar M-ring protein FliF [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 570

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 113/388 (29%), Positives = 184/388 (47%), Gaps = 41/388 (10%)

Query: 48  YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           +  L+  L   D   I   L E+ +++R+ + G S+ VPS+ +   R+ +A  GLP S  
Sbjct: 39  FHPLFTGLSAEDAAGIVQKLKESGVEYRLPEGGGSVLVPSNKLADLRLTMAGIGLPKSG- 97

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
             G+ELFDKVN  G T F + I   RALEGE+ RT+ +++ +  ARVH+  P    F + 
Sbjct: 98  RIGFELFDKVN-LGATEFTEHINYRRALEGELERTVMALAEVETARVHLTFPKDSVFLEA 156

Query: 168 GARPTASVMIRAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER 224
                ASV++R I P    + +   AI HLV +AV  L  G V+VLD  G LL   +   
Sbjct: 157 QQPAKASVLVR-IRPGAKLAPQNVLAITHLVGSAVEGLSPGAVSVLDMNGNLLNRPKAPG 215

Query: 225 NILGK-----SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
              G      +L     ++ E+   +N  L+  LG + FR  V  E +    +  E  +D
Sbjct: 216 LQDGSEPSAATLDYRHQVETELLAKVNATLSPLLGPEKFRVGVSLECDFTGGEQSEETFD 275

Query: 280 PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD-----KKEE 334
           P     RS+ ++  +QR+E S      T    +P  +   +P P S   T      +  E
Sbjct: 276 P----ARSVMVT--SQRTEDS---VGGTTAAGVPGTAS-TLPRPTSRPATGANKTVRTTE 325

Query: 335 QSNYEINTKSIATTH-DNYKLERLSIAVVV--------NKGRLTEVLGRSADQGKIDSYL 385
             +Y+ +++++  TH  +  + ++S+AV+V        +K     VL   + +      L
Sbjct: 326 NISYQ-SSRTVKKTHLPSGVVRKMSLAVLVDQDVSWEKDKNSFKRVLVPPSPE-----KL 379

Query: 386 AEINKIVSAATGINSRRGDTITITSMDF 413
             I  +V+  TG +  RGD + I ++ F
Sbjct: 380 KVIRDLVAGITGFSQERGDQLVIETLPF 407


>gi|167043569|gb|ABZ08264.1| putative Secretory protein of YscJ/FliF family protein [uncultured
           marine microorganism HF4000_APKG2K17]
          Length = 560

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 114/418 (27%), Positives = 195/418 (46%), Gaps = 18/418 (4%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           Q   FF S +   R  IL+   ++L+ ++  +   F  N P +  LY  +E+ D   I  
Sbjct: 38  QFQDFFGSLSLAKRITILVALGIVLIGMVSMI---FVANQPSWAPLYSNMELGDAAAIVE 94

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L E  I + ++  G +I V    V +AR+ LA + +   S     +LF    S G T F
Sbjct: 95  KLQENQIPYLLAPGGRTIMVEPHKVDQARLTLAKEKVTPGSGVGFLDLFS-TPSLGETEF 153

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV- 184
            Q +    A EGE+AR I +I+ + +A+V + +P    F       TA++ +   +    
Sbjct: 154 QQGVKFRVAQEGELARLISTINVVKSAKVSLAIPQKTLFSDNQEETTAAIALNLTSSGAG 213

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK---SLSIVQAIQHEI 241
            K  E I HLVA+AV  L   +V + D +G LL+    + +  GK   + S     ++E+
Sbjct: 214 RKQIETIIHLVASAVEGLSPRNVKITDQSGTLLSRGFSDTSASGKMNDNYSYKSRFENEL 273

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           E  I + +   +G D  R  V A L  D + I+E + DPD     S ++  ++     S 
Sbjct: 274 EAKIVRQIEEVVGKDRVRVNVSATLRFDRRTIKEELVDPDQTSVVSEQVVDESSTGTRSV 333

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
           P     V  N+P  + R+     ++    KK    N+E + + I       ++ RLS++V
Sbjct: 334 PVGPAGVTTNLPEATGREAA---TVSEFSKKNSTRNFESSRREIVLESAVGEVVRLSVSV 390

Query: 362 VVNKGRLTEVLGRSA-DQGKIDSYLAEINK-----IVSAATGINSRRGDTITITSMDF 413
           +++  R +++L  S    G+ ++   E  K     +V AA G N +RGD++ + +M F
Sbjct: 391 LLDN-RRSQILDESGISLGRTNTPWTEAEKETIIGLVKAAMGFNEKRGDSVFVGNMPF 447


>gi|18642464|emb|CAD22875.1| basal-body M-ring protein [Erwinia chrysanthemi]
          Length = 357

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/280 (30%), Positives = 152/280 (54%), Gaps = 14/280 (5%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           L++AS   + I++ ++   +   P Y  LY  L   D   I   L + NI +R +++G++
Sbjct: 30  LLIASAATIAIVVALS--LWARGPDYRVLYTNLNERDGGSIVSELGKMNIPYRFTESGAA 87

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I +PS  V + R+ LA QGLP   +  G+EL D+   FG++ F ++I   RALEGE+ART
Sbjct: 88  IMIPSDKVYETRLKLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQINYQRALEGELART 145

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAA 197
           ++++  I  ARVH+ +P    F +    P+A+V +     RA++ S      AI +LV++
Sbjct: 146 METLGPIQNARVHLAIPKPSLFVREQKSPSAAVTVTLQPGRALDDS---QISAITYLVSS 202

Query: 198 AVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVD 256
           +V  L    VTV+D TGKLLT N+   R++    L     ++   +  I   L   +G  
Sbjct: 203 SVAGLPADKVTVVDQTGKLLTQNDSSGRDLNAAQLKYANEVESNYQRRIEAILTPVVGAG 262

Query: 257 NFRSAVVAELNMDTQQIREIVYDPD-SKVERSIRLSKDAQ 295
           N  + V A+++  +++  +  Y P+ +  + ++R  +++Q
Sbjct: 263 NVHAQVTAQIDFASREQTDEQYQPNQTPNQAAVRSQQNSQ 302


>gi|257871289|ref|ZP_05650942.1| flagellar M-ring protein fliF [Enterococcus gallinarum EG2]
 gi|257805453|gb|EEV34275.1| flagellar M-ring protein fliF [Enterococcus gallinarum EG2]
          Length = 540

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 139/505 (27%), Positives = 252/505 (49%), Gaps = 53/505 (10%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSP-HYDNLYVKLEVSDVNRI 63
           +QL   ++  +SL   +++++ SVI   ++   AA +++N+   Y  L+  L  +D   I
Sbjct: 9   EQLKDRWQMQSSL--KKMIVVLSVI--SVLGITAAVYYLNTRIEYGILFTDLSDADAGTI 64

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG-LPSSSSNSGYELFDKVNSFGL 122
           S  L E  I ++++DNG++I +    V + RI+LA    LP++S+  G+ELFD  N    
Sbjct: 65  SKDLEEQQIAYKLADNGTTILIDKDQVDEYRINLAVDNKLPNTST--GFELFDDANMM-T 121

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T   ++I   RA+ GE+ R I+SI  + +A+V +VMP+   F    + PTAS+++   N 
Sbjct: 122 TDEDRKIMYQRAVTGELQRAIESIDAVKSAKVLLVMPEESVFSSEESAPTASIVLTLKNQ 181

Query: 183 SVY-KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG----KSLSIVQAI 237
            +  +S + I  L + AV  L   +V V+DS G  LT  E E + L     K ++I  + 
Sbjct: 182 QISDESVQGIVTLTSGAVEKLKPENVKVVDSAGNTLTRTEDEASQLSGLNNKYIAIKDSY 241

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY-DPDSKVERSIRLSKDAQR 296
           +  +E  + K L    G D F+ ++  +LN D+ + +++ Y DP+ K E      + A  
Sbjct: 242 EKTLEEKVAKLLTPIYGADKFQVSINLDLNFDSIERKKVTYDDPEIKSE----TVQAAGS 297

Query: 297 SETSQPESAVTVEQNMPHVS----DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
             T Q     TV+ N+ +V+    +      RS+EN          E++T++  T     
Sbjct: 298 QGTVQEAQTGTVDDNVSNVTGTDGEGNNSYSRSVEN----------ELDTETTTTITAPG 347

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
            +ER++ ++V+N   L++     ADQ       AE+ +++++A G ++ RGD I I   D
Sbjct: 348 MIERMTSSIVIN-ANLSQ-----ADQ-------AELQQLIASAVGYDNDRGDQIAIQGFD 394

Query: 413 FLENQLFNSGTVQVSFMDILSRHF--ATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           F + ++  +   Q +     ++ +    +I  +V    TL +  L +  + R    +D  
Sbjct: 395 FAQAEVDPAADPQGNEPIAAAKGYLKYAIIGGIVL---TLFLVILMIVGVIRRRRKEDEL 451

Query: 471 KGEVGGKSILSPPPISSAVTTGLMP 495
           + +V  + +    P  SAV+TG  P
Sbjct: 452 EVDVTEEMVTFAQP--SAVSTGASP 474


>gi|257866378|ref|ZP_05646031.1| flagellar M-ring protein fliF [Enterococcus casseliflavus EC30]
 gi|257873106|ref|ZP_05652759.1| flagellar M-ring protein fliF [Enterococcus casseliflavus EC10]
 gi|257800336|gb|EEV29364.1| flagellar M-ring protein fliF [Enterococcus casseliflavus EC30]
 gi|257807270|gb|EEV36092.1| flagellar M-ring protein fliF [Enterococcus casseliflavus EC10]
          Length = 540

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 123/426 (28%), Positives = 220/426 (51%), Gaps = 46/426 (10%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSP-HYDNLYVKLEVSDVNRI 63
           +QL   ++  +SL   +++++ SVI   ++   AA +++N+   Y  L+  L  +D   I
Sbjct: 9   EQLKDRWQMQSSL--KKMIVVLSVI--SVLGITAAVYYLNTRIEYGILFTDLSDADAGTI 64

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG-LPSSSSNSGYELFDKVNSFGL 122
           S  L E  I ++++DNG++I +    V + RI+LA    LP++S+  G+ELFD  N    
Sbjct: 65  SKDLEEQQIAYKLADNGTTILIDKDQVDEYRINLAVDNKLPNTST--GFELFDDANMM-T 121

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T   ++I   RA+ GE+ R I+SI  + +A+V +VMP+   F    + PTAS+++   N 
Sbjct: 122 TDEDRKIMYQRAVTGELQRAIESIDAVKSAKVLLVMPEESVFSSEESAPTASIVLTLKNQ 181

Query: 183 SVY-KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG----KSLSIVQAI 237
            +  +S + I  L + AV  L   +V V+DS G  LT  E E + L     K ++I  + 
Sbjct: 182 QISDESVQGIVTLTSGAVEKLKPENVKVVDSAGNTLTRTEDEASQLSGLNNKYIAIKDSY 241

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY-DPDSKVERSIRLSKDAQR 296
           +  +E  + K L    G D F+ ++  +LN D+ + +++ Y DP+ K E      + A  
Sbjct: 242 EKTLEEKVAKLLTPIYGADKFQVSINLDLNFDSIERKKVTYDDPEIKSE----TVQAAGS 297

Query: 297 SETSQPESAVTVEQNMPHVS----DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
             T Q     TV+ N+ +V+    +      RS+EN          E++T++  T     
Sbjct: 298 QGTVQEAQTGTVDDNVSNVTGTDGEENNSYSRSVEN----------ELDTETTTTITAPG 347

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
            +ER++ ++V+N   L++     ADQ       AE+ +++++A G ++ RGD I I   D
Sbjct: 348 MIERMTSSIVIN-ANLSQ-----ADQ-------AELQQLIASAVGYDNDRGDQIAIQGFD 394

Query: 413 FLENQL 418
           F + ++
Sbjct: 395 FAQAEV 400


>gi|325567531|ref|ZP_08144198.1| flagellar M-ring protein fliF [Enterococcus casseliflavus ATCC
           12755]
 gi|325158964|gb|EGC71110.1| flagellar M-ring protein fliF [Enterococcus casseliflavus ATCC
           12755]
          Length = 541

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 129/475 (27%), Positives = 240/475 (50%), Gaps = 48/475 (10%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSP-HYDNLYVKLEVSDVNRI 63
           +QL   ++  +SL   +++++ SVI   ++   AA +++N+   Y  L+  L  +D   I
Sbjct: 10  EQLKDRWQMQSSL--KKMIVVLSVI--SVLGITAAVYYLNTRIEYGILFTDLSDADAGTI 65

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG-LPSSSSNSGYELFDKVNSFGL 122
           S  L E  I ++++DNG++I +    V + RI+LA    LP++S+  G+ELFD  N    
Sbjct: 66  SKDLDEQQIAYKLADNGTTILIDKDQVDEYRINLAVDNKLPNTST--GFELFDDANMM-T 122

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T   ++I   RA+ GE+ R I+SI  + +A+V +VMP+   F    + PTAS+++   N 
Sbjct: 123 TDEDRKIMYQRAVTGELQRAIESIDAVKSAKVLLVMPEESVFSSEESAPTASIVLSLKNQ 182

Query: 183 SVY-KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG----KSLSIVQAI 237
            +  +S + I  L + AV  L   +V V+DS G  LT  E E + L     K ++I  + 
Sbjct: 183 QISDESVQGIVTLTSGAVEKLKPENVKVVDSAGNTLTRTEDEASQLSGLNNKYIAIKDSY 242

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY-DPDSKVERSIRLSKDAQR 296
           +  +E  + K L    G D F+ ++  +LN D+ + +++ Y DP+ K E      + A  
Sbjct: 243 EKTLEEKVAKLLTPIYGADKFQVSINLDLNFDSIERKKVTYDDPEIKSE----TVQAAGS 298

Query: 297 SETSQPESAVTVEQNMPHVS----DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
             T Q     TV+ N+ +V+    +      RS+EN          E++T++  T     
Sbjct: 299 QGTVQEAQTGTVDDNVSNVTGTDGEGNNSYSRSVEN----------ELDTETTTTITAPG 348

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
            +ER++ ++V+N   L++     ADQ       AE+ +++++A G ++ RGD I I   D
Sbjct: 349 MIERMTSSIVIN-ANLSQ-----ADQ-------AELQQLIASAVGYDNDRGDQIAIQGFD 395

Query: 413 FLENQLFNSGTVQVSFMDILSRHFA--TVINALVFLVGTLLVTFLGLHALRRLHN 465
           F + ++  +   Q +     ++ +    +I  +V  +  +++  +G+   RR  +
Sbjct: 396 FAQAEVDPAADPQGNEQIAAAKGYVKYAIIGGIVLTLFLVILMIVGVIRRRRKED 450


>gi|153947902|ref|YP_001399623.1| flagellar MS-ring protein [Yersinia pseudotuberculosis IP 31758]
 gi|152959397|gb|ABS46858.1| flagellar M-ring protein FliF [Yersinia pseudotuberculosis IP
           31758]
          Length = 546

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 119/425 (28%), Positives = 212/425 (49%), Gaps = 36/425 (8%)

Query: 3   ILDQLLQFFKSGTSLGRTR-ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           +LD++ Q    G     T+ IL+ A+ +LV   +  +   + +S  Y  L+   E   V 
Sbjct: 1   MLDKIKQKLSPGQLGENTKTILMSAAALLVTAAIIFS--LWRSSQGYTALFGSQENIPVT 58

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           ++   L    I +RI+ +   + V  + +GKARI LAA+G+ +++   GYEL DK +  G
Sbjct: 59  QVVEVLEGEAIAYRINPDNGQVLVAENQLGKARILLAAKGI-TATLPIGYELMDKESMLG 117

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARP--TASVMIRA 179
            + F+Q +   R+LEGE+A+++ ++S +  ARVH+ M +  SF  I  R   +ASV++R 
Sbjct: 118 SSQFIQNVRYKRSLEGELAQSMMALSAVEYARVHLGMSEASSF-AISNRSDNSASVVLRL 176

Query: 180 INPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSI 233
                  + +  AI  LVA ++P +   +V V+D  G+LL+    AN      +     +
Sbjct: 177 RYGQTLSTEQVGAIVQLVAGSIPGMKPANVRVVDQHGELLSQAYQANSEGVPSVKSGTEL 236

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293
              +Q   E NI   L + +G +N+R +V  +L+M   +     Y PD       R++ +
Sbjct: 237 AHYLQSTTEKNIANLLNSVIGANNYRISVSTQLDMSRIEETAERYGPDP------RINDE 290

Query: 294 AQRSETSQPESAVTV-----EQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
             + E S  + A+ +      Q +P     + P   S     +K     Y+ N + +   
Sbjct: 291 NIQQENSNDDMAMGIPGSLSNQPIPQSQAGQTPAAVSRSQAQRK---YIYDRNIRHV--R 345

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
           +  YKLE++++AVV+NK  L  +   + +Q +      E+ +++  A GI+ +RGD++TI
Sbjct: 346 YPGYKLEKMTVAVVLNKS-LPVLEQWTPEQQE------ELKRLIEDAAGIDVKRGDSLTI 398

Query: 409 TSMDF 413
             M F
Sbjct: 399 NVMAF 403


>gi|257875991|ref|ZP_05655644.1| flagellar M-ring protein fliF [Enterococcus casseliflavus EC20]
 gi|257810157|gb|EEV38977.1| flagellar M-ring protein fliF [Enterococcus casseliflavus EC20]
          Length = 540

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 123/426 (28%), Positives = 220/426 (51%), Gaps = 46/426 (10%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSP-HYDNLYVKLEVSDVNRI 63
           +QL   ++  +SL   +++++ SVI   ++   AA +++N+   Y  L+  L  +D   I
Sbjct: 9   EQLKDRWQMQSSL--KKMIVVLSVI--SVLGITAAVYYLNTRIEYGILFTDLSDADAGTI 64

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG-LPSSSSNSGYELFDKVNSFGL 122
           S  L E  I ++++DNG++I +    V + RI+LA    LP++S+  G+ELFD  N    
Sbjct: 65  SKDLEEQQIAYKLADNGTTILIDKDQVDEYRINLAVDNKLPNTST--GFELFDDANMM-T 121

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T   ++I   RA+ GE+ R I+SI  + +A+V +VMP+   F    + PTAS+++   N 
Sbjct: 122 TDEDRKIMYQRAVTGELQRAIESIDAVKSAKVLLVMPEESVFSSEESAPTASIVLTLKNQ 181

Query: 183 SVY-KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG----KSLSIVQAI 237
            +  +S + I  L + AV  L   +V V+DS G  LT  E E + L     K ++I  + 
Sbjct: 182 QISDESVQGIVTLTSGAVEKLKPENVKVVDSAGNTLTRTEDEASQLSGLNNKYIAIKDSY 241

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY-DPDSKVERSIRLSKDAQR 296
           +  +E  + K L    G D F+ ++  +LN D+ + +++ Y DP+ K E      + A  
Sbjct: 242 EKTLEEKVAKLLTPIYGADKFQVSINLDLNFDSIERKKVTYDDPEIKSE----TVQAAGS 297

Query: 297 SETSQPESAVTVEQNMPHVS----DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
             T Q     TV+ N+ +V+    +      RS+EN          E++T++  T     
Sbjct: 298 QGTVQEAQTGTVDDNVSNVTGTDGEGNNSYSRSVEN----------ELDTETTTTITAPG 347

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
            +ER++ ++V+N   L++     ADQ       AE+ +++++A G ++ RGD I I   D
Sbjct: 348 MIERMTSSIVIN-ANLSQ-----ADQ-------AELQQLIASAVGYDNDRGDQIAIQGFD 394

Query: 413 FLENQL 418
           F + ++
Sbjct: 395 FAQAEV 400


>gi|332284042|ref|YP_004415953.1| flagellar MS-ring protein [Pusillimonas sp. T7-7]
 gi|330427995|gb|AEC19329.1| flagellar MS-ring protein [Pusillimonas sp. T7-7]
          Length = 563

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 120/417 (28%), Positives = 190/417 (45%), Gaps = 53/417 (12%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  LE  D   I  AL++ NI +++S  G++I VP + V + R+ LA Q
Sbjct: 41  MWARTPDYGVLFSNLEDRDGGAIVAALTQQNIPYQLSSTGNAILVPRNKVHEVRLQLAQQ 100

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP     +G+EL D+   FG + F ++I   RALEGE+  +IQS+  + +ARVH+ +P 
Sbjct: 101 GLPRGGE-TGFELLDQTR-FGASQFTEQINYQRALEGELVSSIQSMHAVQSARVHLAIPR 158

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    PTASV++          A+  AI  LV+++VP+L    V+V+D  G+LLT
Sbjct: 159 ESLFVRDRQPPTASVLLTLYPGRSLSDAQVAAITWLVSSSVPHLSADKVSVVDQNGRLLT 218

Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
               E    G   +++  I+      I   +   +G  N R+ V A+++   ++    VY
Sbjct: 219 NLNGEAGADGTRRNLINDIEQRTVQRILTLITPLVGPGNVRAQVSADVDFAQREQTSEVY 278

Query: 279 ----DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV----PLPRSL---- 326
                P     RS + S   Q +    PE       N P ++        P P +     
Sbjct: 279 RPNQKPGEAAVRSEQTSSSVQHN-VLPPEGIPGALTNQPPLNAVAPIVTPPAPGAANPND 337

Query: 327 -----------------------ENTDKKEEQS------NYEINTKSIATTHDNY-KLER 356
                                  EN  +    S      NYE++ +SI    D    L R
Sbjct: 338 PNAAPDAAPDAAQNPNGNVLAGGENLQQGTGNSRSDATINYEVD-RSITHVKDPVGSLRR 396

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           LS AVVVN     +V G++      +  LA++N +V  A G +  RGDT+++ +  F
Sbjct: 397 LSAAVVVN---YRDVDGKATP--LPEEELAKLNDLVKQAMGYSPARGDTLSVVNSQF 448


>gi|114800445|ref|YP_758973.1| flagellar MS-ring protein [Hyphomonas neptunium ATCC 15444]
 gi|114740619|gb|ABI78744.1| flagellar M-ring protein FliF [Hyphomonas neptunium ATCC 15444]
          Length = 528

 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 113/368 (30%), Positives = 177/368 (48%), Gaps = 20/368 (5%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110
           LY  LE +    I   L ++   + I   G +I VP       R  LA QGLP  S   G
Sbjct: 44  LYSGLEPAHAGDIIKELEQSGTPYEI--KGEAIFVPQGKRDAIRFTLAQQGLPRPSVQ-G 100

Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170
           YEL D+VN F +TS M      RA EGE+ RTI +I G+ +ARVHI       F +    
Sbjct: 101 YELLDEVNGFSVTSEMYNAAYWRAKEGELTRTILAIPGVSSARVHIGANLRSGFSRSQPN 160

Query: 171 PTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS 230
            TASV +          AEAI+++VA AV  L   DV V+D    +L   +  R    + 
Sbjct: 161 QTASVTLTTARDMTAGQAEAIQYMVALAVAGLRAEDVAVIDPVKGILAGPKANRT---EE 217

Query: 231 LSIVQAIQHE-IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
            ++  A Q   +E  I   L   +GV N R +   +++   Q    + +DP+S+V R+ R
Sbjct: 218 PAVAAATQASLLEQKILSLLEPRVGVGNARVSATVDVSRQRQVTSAVTFDPNSRVIRN-R 276

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
            + D+  +        +TV  N+P   +       + +N+    E  +YEIN        
Sbjct: 277 TTNDSTGASAGA-GGGMTVASNLPQGGEGGGGNTSTNKNS---TETVSYEINETRTEVET 332

Query: 350 DNYKLERLSIAVVVNKGRLTEVLG---RSADQGKIDSYL-AEINKIVSAATGINSRRGDT 405
              +++R++IAV++N+    + LG    +AD   +   + A+  +++++A GI++ RGDT
Sbjct: 333 LPGEVQRITIAVLLNE----QALGIDPAAADVATLTQQMAADFEQLIASAAGIDTARGDT 388

Query: 406 ITITSMDF 413
           I+I  M F
Sbjct: 389 ISIELMPF 396


>gi|322379554|ref|ZP_08053893.1| flagellar MS-ring protein [Helicobacter suis HS1]
 gi|322379773|ref|ZP_08054077.1| flagellar MS-ring protein [Helicobacter suis HS5]
 gi|321147801|gb|EFX42397.1| flagellar MS-ring protein [Helicobacter suis HS5]
 gi|321148014|gb|EFX42575.1| flagellar MS-ring protein [Helicobacter suis HS1]
          Length = 567

 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 127/441 (28%), Positives = 219/441 (49%), Gaps = 52/441 (11%)

Query: 2   AILDQLLQFFKSGTSLGRT-RILILASVILVPIMLFMAARFFVNSPHYDN--------LY 52
           ++L Q++ FF   + L R  +I I+ +V L  I+ F+   F +  P +D         L+
Sbjct: 5   SLLQQVISFF---SKLNRAQKITIVTAVTL--IVAFLV--FLLIYPTHDKGDLSGYGVLF 57

Query: 53  VKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYE 112
             ++ SD   I   L + +I ++I     +I +P   + + RI LA+QG+P +S   GYE
Sbjct: 58  EGMDNSDNALILQHLQQKHIPYKIPKE-DTILIPRDRIYEERISLASQGIPKTSK-VGYE 115

Query: 113 LFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPT 172
           +FD +  FG T F Q I  +RA+EGE++RTI+S++ I  A VHI +P    F      PT
Sbjct: 116 IFD-IKDFGATDFDQNIKYIRAIEGELSRTIESLNPIEKANVHIAIPKDSVFVSHEIPPT 174

Query: 173 ASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNI 226
           ASVM++ I P++    +    I++L+AA+VP L + +V +++  G+ L  N+     R +
Sbjct: 175 ASVMLK-IKPNMRLLPRQIIGIKNLIAASVPKLTVENVKLVNENGEPLGENDQLDTTREL 233

Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVE 285
               L   Q  ++ +E  I   LA  + G D   + V AE +   ++  +  +DP++ V 
Sbjct: 234 AQAQLRYKQNFENMLESKIANILAPIVGGRDKVVARVNAEFDFSQKKSTKETFDPNNVV- 292

Query: 286 RSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLP-----RSLENTDKKEEQSNYEI 340
              R  +  +  +   P+  V     +P V     P+      +  E  +K    +NYE+
Sbjct: 293 ---RSEQTMEEKKEGLPKKQVG---GVPGVVSNIGPVQGIANDQLKEKYEKSTNTTNYEV 346

Query: 341 NTKSIATTHDNYK-LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLA-------EINKIV 392
             K ++     +  L RL+ AVVV+ G+  +V     +  +   Y+A       +IN +V
Sbjct: 347 G-KMVSEIKGEFGVLTRLNAAVVVD-GKYQKVNKNGTESME---YVALSAAEMDQINALV 401

Query: 393 SAATGINSRRGDTITITSMDF 413
             A G N  RGD +T+++ +F
Sbjct: 402 KQAIGYNQNRGDAVTVSNFEF 422


>gi|50954404|ref|YP_061692.1| flagellar M-ring protein [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50950886|gb|AAT88587.1| flagellar M-ring protein [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 441

 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 121/418 (28%), Positives = 198/418 (47%), Gaps = 46/418 (11%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
           +G S  +  + ILA  +LV  +       +++ P    LY  L  +D   I+  L   N+
Sbjct: 17  AGFSFAQKTVSILA--VLVLALGVTGLSLWMSQPQRVPLYTGLSAADAEAITQQLKTDNV 74

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
            ++++D GSSI VP   V   R+  AA GLP+++ N GY L D + S   + F Q +T  
Sbjct: 75  SYQLTDGGSSILVPQESVYTERLKSAAAGLPTAA-NKGYSLLDNM-SITTSEFQQSVTYQ 132

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA--EA 190
           RA+EGE+A TI+++ G+ ++ V + +P+   F    A PTASV I   +         +A
Sbjct: 133 RAMEGELANTIEAMDGVKSSSVKLAIPEKTVFTDQAADPTASVFIATASGHTLTRGQVQA 192

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI----VQAIQHEIEMNIN 246
           I HL +AA+  +   DV+V+DS+G +L+A       +G S S+       +Q  ++  + 
Sbjct: 193 IVHLTSAAIVGMKPADVSVIDSSGAVLSA-------IGGSASVSDGTADTLQASVQSAVQ 245

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET---SQPE 303
             L   LG  N  S V A  N    Q           V     ++  ++  ET   S P 
Sbjct: 246 GMLDKVLGSGN--STVTA--NASLSQATGTKTTQTYTVPTGAPVTSSSEEKETYTGSGPA 301

Query: 304 SAVTVEQ-------NMPHVSDRKVPLPRSLENTD-KKEEQSNYEINTKSIATTHDNYKLE 355
           +A  + Q       N    + R V    S ++    K+   N    T+SI        L+
Sbjct: 302 AAGVLGQPSLDVATNGTRNTTRAVGGNGSYQSAKLVKDNALNSVTETQSIPAGL----LQ 357

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           RL+++VVVNK  + E  G +          A+++++VSAA G+ + RGDT+++  + F
Sbjct: 358 RLTVSVVVNK-TVAEAAGLAT---------AQLSQMVSAAAGVETTRGDTVSVEFVGF 405


>gi|126176167|ref|YP_001052316.1| flagellar MS-ring protein [Shewanella baltica OS155]
 gi|304412519|ref|ZP_07394125.1| flagellar M-ring protein FliF [Shewanella baltica OS183]
 gi|307307178|ref|ZP_07586916.1| flagellar M-ring protein FliF [Shewanella baltica BA175]
 gi|125999372|gb|ABN63447.1| flagellar M-ring protein FliF [Shewanella baltica OS155]
 gi|304349161|gb|EFM13573.1| flagellar M-ring protein FliF [Shewanella baltica OS183]
 gi|306910417|gb|EFN40848.1| flagellar M-ring protein FliF [Shewanella baltica BA175]
          Length = 558

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 121/441 (27%), Positives = 201/441 (45%), Gaps = 50/441 (11%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +  Y  LY   E  D +++   L    ID+R+  N  ++ V    VG AR+ LAA+
Sbjct: 57  LWTATAGYRPLYGSQENVDTSQVLNVLDAEGIDYRLDANSGAVLVAEEQVGNARMILAAK 116

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           G+  +   SG E  D   + G + FM++     +LEGE+ARTI S+  + AARVH+ +P 
Sbjct: 117 GV-KAKVPSGMEALDNT-ALGTSQFMEQAKYRNSLEGELARTIMSLKLVRAARVHLAIPK 174

Query: 161 MGSF-RKIGARPTASVMIRAINPSVYKS---AEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
              F R+    PTASVM++ ++P+   S    EAI +LVA +V  L   ++ V+D  G+ 
Sbjct: 175 QTLFIRQEPELPTASVMLQ-LDPNTRLSESQVEAIVNLVAGSVTGLTASNIKVVDQDGRY 233

Query: 217 LTAN-------EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
           L+ N          RN   K L   + +++ +  N +  L   LG +NF+  V A++N +
Sbjct: 234 LSENISGNQDLSQSRN---KQLQYTRELENSLVANASSMLEPVLGQENFQVRVTAKVNFN 290

Query: 270 TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT 329
             +  +   DP + V           +  TS  +S+ ++   +P     K P        
Sbjct: 291 QVEETKESLDPQNVVT----------QERTSVDDSSNSIAAGIPGALSNKPPQAGKAAAD 340

Query: 330 D-----KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI--D 382
           D     K+EE   Y++        +   +LE LS++V++N          +  QG    +
Sbjct: 341 DKTRNLKQEESRQYDVGRSVRHVRYQQMQLENLSVSVLINS---------ATSQGAFNDE 391

Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINA 442
           + LA+   +V  A G ++ RGD+ TI + +F       + TV   F              
Sbjct: 392 AQLAKFGNMVKDAIGFSAARGDSFTINAFEF-------TPTVTAEFTPSPWWQSENYQAY 444

Query: 443 LVFLVGTLLVTFLGLHALRRL 463
           L +++G +L   L L  LR L
Sbjct: 445 LRYIIGGILGFGLILFVLRPL 465


>gi|302389658|ref|YP_003825479.1| flagellar M-ring protein FliF [Thermosediminibacter oceani DSM
           16646]
 gi|302200286|gb|ADL07856.1| flagellar M-ring protein FliF [Thermosediminibacter oceani DSM
           16646]
          Length = 517

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 119/447 (26%), Positives = 208/447 (46%), Gaps = 48/447 (10%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           Q+ +F+ S   + +  +++ A ++++   L     +F++ P Y  L+  L + D   I  
Sbjct: 10  QVSEFWNSRNKVQKISLILGALLVILTAGLLG---YFISRPSYSPLFTNLSMQDAGEIVK 66

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L +  I ++I+D G +I V S  V K R++LA +GLP        ++F+K    G T +
Sbjct: 67  RLEDMKIPYKIADGGKTILVESKDVYKTRLNLAQEGLPKGGVLGFSDIFNKT-KLGTTDW 125

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR--PTASVMIRAINPS 183
            +++   +AL+GE+ RTI+ +  + +ARVHIV P    F +  A+  P+A+V ++ + P 
Sbjct: 126 ERQLQYTQALQGELTRTIEEMEQVESARVHIVQPRESLFIEPNAQKEPSAAVFLK-LKPG 184

Query: 184 VYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKL-----LTANEMERNILGKSLSIVQ 235
           V  + E IR   +LVA +V  L   ++T++D  G++     L+  +  +  +   L I  
Sbjct: 185 VEIAEEEIRGIINLVAHSVEGLKPENITIVDEFGRVLSNIPLSEEQNTKEEINSQLVIQN 244

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK-----VERSIRL 290
             Q +++ N+   L    G  N    V A+LN D + +   ++ P S      + RS++ 
Sbjct: 245 NFQKQLQANVQSLLEQIFGPGNVAVRVNAQLNFDKKTVESRLFTPVSSETGDGILRSVQE 304

Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
            ++      S P        N+P       P      N  K E   NYE+N      T  
Sbjct: 305 LREHFSGTGSVPTGNPGTGTNIPGYQQ---PNTNGTSNYQKTEVIRNYEMNESKENVTVA 361

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
              +++L+++VVVN         R  +  + D    +I  +V  A G + +R D IT+  
Sbjct: 362 PGTVKKLTVSVVVN---------RDLNDEEKD----KIATLVGNAIGYDIQR-DQITVEG 407

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFA 437
           M F  NQL           DILS+  A
Sbjct: 408 MTF-NNQL----------ADILSKQLA 423


>gi|149191163|ref|ZP_01869421.1| flagellar M-ring protein [Vibrio shilonii AK1]
 gi|148835001|gb|EDL51980.1| flagellar M-ring protein [Vibrio shilonii AK1]
          Length = 557

 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 124/438 (28%), Positives = 202/438 (46%), Gaps = 34/438 (7%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92
           IML+ +A  F        LY K    D +++   L E +I +++S +   I VP   V K
Sbjct: 56  IMLWTSAERF------RPLYSKSANFDSSQVLQLLDEESIRYQLSQDDGQILVPEGDVAK 109

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
            R+ LA++GL      SG++  D   S G + FM+      ALEGE+AR+I ++S +  A
Sbjct: 110 IRMILASKGL-KEQLPSGFDSLDSSKSLGESQFMENARYRHALEGELARSITTMSAVSLA 168

Query: 153 RVHIVMPDMGSF-RKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTV 209
           RVH+ +P    F R+ G +P ASV++  IN    K    E++ +LV+ AV  L    V V
Sbjct: 169 RVHLAIPKESLFMREDGEQPRASVIVHIINGMDLKPTQVESVINLVSGAVIGLKSEHVRV 228

Query: 210 LDSTGKLLTANEMERNI---LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAEL 266
           +D  G+LL+ +    +I    GK     + ++  +       L   LG  NFR  + +++
Sbjct: 229 VDQHGRLLSNDATVGDITVTTGKQSDYKRNLERTLVAQATDMLTPILGASNFRVQIASDI 288

Query: 267 NMD-TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRS 325
           +    ++  EI  DP   V R   L  D   +E+S          N P V+D + P P  
Sbjct: 289 DFSRIEETEEIYADP---VVRKETLLNDV--NESSMALGIPGALSNTPPVTDGE-PQPEP 342

Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385
               ++ E   +Y ++ K     H    L+ LS+++VVN          +A+Q      L
Sbjct: 343 NAKVNRSETSRDYAVSGKVRHIQHQQGVLQNLSVSIVVND-------LANANQTWTPEEL 395

Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445
             +  +V +A G +  RGDTI IT   F+   + +   V   F +        ++  L +
Sbjct: 396 TNVENVVRSAIGFSETRGDTIHITHFPFVVASIPDQAPV-AWFEN------TNIMQPLKY 448

Query: 446 LVGTLLVTFLGLHALRRL 463
           L+G +L   + +  LR L
Sbjct: 449 LLGVMLSGLMIMVVLRPL 466


>gi|257484920|ref|ZP_05638961.1| flagellar MS-ring protein [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 447

 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 110/399 (27%), Positives = 177/399 (44%), Gaps = 46/399 (11%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L
Sbjct: 24  LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + ANI++ +  N  ++ V S  V +ARI LA  G+  + +N G+E+ DK    G + FM+
Sbjct: 84  TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINP 182
                R LEGE+ARTI +++ +  ARVH+ +P    F +   +P+ASV++     R++ P
Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHE 240
           S      AI +LVA +VP L    +TV+D  G LL+  A   E  + GK     + ++  
Sbjct: 204 S---QVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGM 260

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           +   +   L   LG D +++ V A ++    +     ++PD    RS + S + QRS +S
Sbjct: 261 LTQRVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQ-SVNEQRSSSS 319

Query: 301 -----------QPESAVTVEQNM----------------------PHVSDRKVPLPRSLE 327
                      QP    T  QN                         + D     P    
Sbjct: 320 STGGVPGALSNQPPGPATAPQNATAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAP 379

Query: 328 NTDKKEEQS--NYEINTKSIATTHDNYKLERLSIAVVVN 364
               K  QS  N+E++     T     +L RLS+AVVV+
Sbjct: 380 YPADKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVD 418


>gi|269792946|ref|YP_003317850.1| flagellar M-ring protein FliF [Thermanaerovibrio acidaminovorans
           DSM 6589]
 gi|269100581|gb|ACZ19568.1| flagellar M-ring protein FliF [Thermanaerovibrio acidaminovorans
           DSM 6589]
          Length = 524

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 119/392 (30%), Positives = 187/392 (47%), Gaps = 39/392 (9%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           F      YD L+  L + D   +   L E  I F++    ++I VP   V +ARI LA  
Sbjct: 42  FVAGRTAYDPLFSGLTMEDQGAVVEYLKEQKIPFKVDPGANAILVPRRNVYEARIALAQM 101

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           G+P      G+E+FD+    G+  F Q +   RALEGE++RTI  I  +  ARV IV+P+
Sbjct: 102 GIPKGGV-VGFEIFDQ-PKMGMNDFQQRVAYARALEGELSRTISKIDAVEEARVSIVIPE 159

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLL 217
              F +     TASV++R + P      E +R   +LVA +V  L   DVTV+D++GK+L
Sbjct: 160 QRLFLEEQRPSTASVLVR-LKPGREIGQEQVRGIVNLVARSVEGLRPEDVTVVDTSGKVL 218

Query: 218 TANEMERNIL------GKSLSIVQ-----AIQHEIEMNINKALAAFLGVDNFRSAVVAEL 266
           +    + N++      G+++S VQ       + E+E  +   L    G       V  EL
Sbjct: 219 SDLIHDDNLIYMSGSDGRAVSSVQRELERQQEQELERKVRVMLEKVFGPGKAVVRVRVEL 278

Query: 267 NMDTQQI--REIVYDPDSK-VERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLP 323
           + D +    RE +  PD K V RS +  +++     + P  A     N+P      V  P
Sbjct: 279 DFDKKSTSRREFIPGPDGKGVIRSQQNVEESYTGPGTPPGGAPGTTTNIPGY----VVNP 334

Query: 324 RSLENTD--KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI 381
               N +  K +  +NY+I T+   T      ++RLS +V+V+ G+L E   ++      
Sbjct: 335 NQGGNVEYNKTDTVTNYDITTQESQTQSTPGAIKRLSASVIVD-GQLDEAASQN------ 387

Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
                 + + V+AA GI+  RGD + I +M F
Sbjct: 388 ------LRQTVAAAIGIDEARGDRLVIQAMKF 413


>gi|330889061|gb|EGH21722.1| flagellar MS-ring protein [Pseudomonas syringae pv. mori str.
           301020]
          Length = 428

 Score =  130 bits (328), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 110/399 (27%), Positives = 177/399 (44%), Gaps = 46/399 (11%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L
Sbjct: 24  LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + ANI++ +  N  ++ V S  V +ARI LA  G+  + +N G+E+ DK    G + FM+
Sbjct: 84  TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINP 182
                R LEGE+ARTI +++ +  ARVH+ +P    F +   +P+ASV++     R++ P
Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHE 240
           S      AI +LVA +VP L    +TV+D  G LL+  A   E  + GK     + ++  
Sbjct: 204 S---QVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGM 260

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           +   +   L   LG D +++ V A ++    +     ++PD    RS + S + QRS +S
Sbjct: 261 LTQRVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQ-SVNEQRSSSS 319

Query: 301 -----------QPESAVTVEQNM----------------------PHVSDRKVPLPRSLE 327
                      QP    T  QN                         + D     P    
Sbjct: 320 STGGVPGALSNQPPGPATAPQNATAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAP 379

Query: 328 NTDKKEEQS--NYEINTKSIATTHDNYKLERLSIAVVVN 364
               K  QS  N+E++     T     +L RLS+AVVV+
Sbjct: 380 YPADKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVD 418


>gi|126665015|ref|ZP_01735998.1| flagellar M-ring protein [Marinobacter sp. ELB17]
 gi|126630385|gb|EBA01000.1| flagellar M-ring protein [Marinobacter sp. ELB17]
          Length = 569

 Score =  130 bits (328), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 194/408 (47%), Gaps = 28/408 (6%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92
           + L +A   +   P+Y  +   L   +   ++  L  + ID+++     ++ V +  V  
Sbjct: 52  VALGVAVVLWAQEPNYQPVLGDLSSYNPQDVTSILDSSGIDYKMDPRTGALLVVADQVYN 111

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
           AR+ LAA+G+ +     G+EL D+    G + +M+ I+  R LEGE+ARTI S+ G+ +A
Sbjct: 112 ARLRLAAEGV-TDQKTLGFELLDQDRGLGTSQYMETISYRRGLEGELARTIASMRGVRSA 170

Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAI---NPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209
           RVH+ +P+   F +    P+ASV +       P     A AI +LVA +VP +    VTV
Sbjct: 171 RVHLAIPERSVFIRDAREPSASVFLEVFAGRRPEQEYIA-AIVNLVAGSVPMMTQSGVTV 229

Query: 210 LDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELN 267
           +D  G LLT  + E +   +         ++  +   ++  ++  +G   +R+ V A+L+
Sbjct: 230 VDQNGNLLTGADAETDTDRMSDQYDYTDRVEERLSRRVSSLISPIVGEGRYRTEVSADLD 289

Query: 268 MDTQQIREIVYDPDSKVERSIRLSKDAQRSE----------TSQPESAVTVEQNMPHVSD 317
             + +  E +++P+ +  RS R   + + +           ++QP +  TV Q     ++
Sbjct: 290 FSSVERAEELFNPEQQAVRSERQLTERRSAGDGPIGIPGALSNQPPANATVPQQANAGAN 349

Query: 318 RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSAD 377
                P       + E   NYE++        +  +++RL++A+ V+  ++      +AD
Sbjct: 350 ADGAEPAPAPVDVRSESTRNYEMDRTVSYVRQELGRIKRLTVALAVDDIKVV-----NAD 404

Query: 378 QGKI------DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
            G +      +  L  ++ +V  A G ++ RGD++T+ +  F   Q+ 
Sbjct: 405 TGAVTYEPWPEQELQRLSMLVRDAVGYSAARGDSVTVMNTAFAPEQVL 452


>gi|332162913|ref|YP_004299490.1| flagellar M-ring protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325667143|gb|ADZ43787.1| Flagellar M-ring protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 541

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 142/572 (24%), Positives = 265/572 (46%), Gaps = 68/572 (11%)

Query: 3   ILDQLLQFFKSGTSLGRTR--ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           +LD++ Q   +   LG+ +  IL+ A+ ILV   +  +   + +S  Y  L+   E   V
Sbjct: 1   MLDKIKQQLPA-IRLGKNQKSILMGAAAILVTGAIIFS--LWRSSQGYTALFGSQEHIPV 57

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            ++   L    I +RI+ +   I V  + +G+ARI LAA+G+ +++  +GYEL D+    
Sbjct: 58  TQVVEVLDGEAIAYRINPDNGQILVAENQLGRARILLAAKGI-TATLPTGYELMDQETML 116

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR--PTASVMIR 178
           G + F+Q +   R+LEGE+A++I +++ +  ARVH+ M +  SF  I  R   +ASV++R
Sbjct: 117 GSSQFIQNVRYKRSLEGELAQSIMALTSVDYARVHLGMSEASSF-AISNRSESSASVILR 175

Query: 179 AINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLS 232
                  K+ +  AI  LVA ++P +   +V V+D  G+LL+    AN      +     
Sbjct: 176 LKYGQTLKADQVGAIVQLVAGSIPGMKAANVRVVDQHGELLSEAYQANGKGMTNVKNGAE 235

Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI---- 288
           +   +Q   E +I   L++ +G +N+R +V  +L++             S+VE ++    
Sbjct: 236 LAHYLQSTTEKSIANLLSSVVGANNYRISVATQLDL-------------SRVEETLERYG 282

Query: 289 ---RLSKDAQRSETSQPESAVTVE---QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINT 342
              R+S +  + E    + A+ +     N P    +    P ++    + + Q  Y  + 
Sbjct: 283 AEPRVSDENIQQENGNEDMAMGIPGSLSNQPAAQPKNANAPAAM---SRSQAQRKYAYDR 339

Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402
                 H  +KLE++++AV++NK          A +      L E+ +++  A GI+++R
Sbjct: 340 DIRHVRHPGFKLEKMTVAVILNK-------SAPALEKWTPEQLNELKRLIEDAAGIDAKR 392

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           GD++T+  + F    L +   +   + D  +  +  +    +  +  LL     L A  R
Sbjct: 393 GDSLTLNMLAFTVPTLIDEPVI-AWWQDATTFRWVEIAGIGLLSLLFLLFGVRPLMA--R 449

Query: 463 LHNIDD-----AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS 517
           L   DD     A    + G ++ +    SSA T  ++P  +          F    NL  
Sbjct: 450 LSRRDDKHSALAMAENIDGLNVTNTTSESSATTEPMLPGSS----------FKEDDNLPP 499

Query: 518 RINSYVSKQSDLRLLHMIEINEERFAKILRKW 549
           + +    K S L+ L   E   ER A+++++W
Sbjct: 500 QGSGLEIKISHLQQLAQSET--ERVAEVIKQW 529


>gi|322432996|ref|YP_004210245.1| flagellar M-ring protein FliF [Acidobacterium sp. MP5ACTX9]
 gi|321165223|gb|ADW70927.1| flagellar M-ring protein FliF [Acidobacterium sp. MP5ACTX9]
          Length = 525

 Score =  130 bits (327), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 116/428 (27%), Positives = 204/428 (47%), Gaps = 33/428 (7%)

Query: 1   MAILDQLL----QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLE 56
           MA  DQ+     QF+ + T   R  + + A+  +  + LF  A   V +P Y  L   LE
Sbjct: 1   MAGFDQIFVQAKQFWATRTQSQRLFLGVGAAATVGLLALF--ANLMV-TPDYKPLISGLE 57

Query: 57  VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
            +D   IS  L+   I F++S +G SISVP+  V  AR+ +A+    + S   G+E+FDK
Sbjct: 58  SADAQAISADLTAKKIPFQLSPDGKSISVPADQVDAARLDVASN-QSTHSGRLGFEIFDK 116

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
           V S+G T F +++   RALEGE+ RTI ++ G+ +ARVH+VM     F        ASV 
Sbjct: 117 V-SWGQTEFDEKVNYQRALEGELERTIVTLGGVKSARVHLVMATDSVFLDREKSAKASVT 175

Query: 177 IRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ 235
           ++     + +    +I+ LV+ AV  L   DV+++D+       +       G      +
Sbjct: 176 LKLNRGGLSHDETASIQRLVSGAVEGLKPTDVSIIDAD------SNQSMGAAGDGAMGEE 229

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
             + ++   +   L   +G D+ R++V  E +  T +  +  YDP   V  +I+ S ++ 
Sbjct: 230 GAERQLTQRLMATLTPVVGGDHLRASVNVEYDPGTTEENQEKYDPAVSVPLTIQRSDEST 289

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD-KKEEQSNYEINTKSIATTHDNYKL 354
            +         T   N+P  +   VP P   ++    K E + Y +N  +  +     ++
Sbjct: 290 GAGAGVGGVPGTTS-NVPQ-NKANVPPPVGEDSAQVSKTENATYGVNKITRHSLEPAGRI 347

Query: 355 ERLSIAVVVN---------KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
           +R++ A+VV+          G+ TE+  + + Q      L +I  +   A G+++ RGD 
Sbjct: 348 KRITAALVVDDSVKRKLGANGKWTEIRTKRSPQ-----ELKQIETLAQNAIGLDTTRGDV 402

Query: 406 ITITSMDF 413
           I++ ++ F
Sbjct: 403 ISVENLAF 410


>gi|312962276|ref|ZP_07776768.1| flagellar M-ring protein FliF [Pseudomonas fluorescens WH6]
 gi|311283613|gb|EFQ62202.1| flagellar M-ring protein FliF [Pseudomonas fluorescens WH6]
          Length = 592

 Score =  130 bits (327), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 148/606 (24%), Positives = 256/606 (42%), Gaps = 104/606 (17%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L
Sbjct: 22  LSFLENLSEMTMLRQVGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMETL 81

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + A+I + +  N  ++ V +  V +AR+ LAA G+  S SN G+E+ DK    G + FM+
Sbjct: 82  AAADIAYTVEPNSGALLVKADDVARARMKLAAAGVTPSDSNIGFEILDKDQGLGTSQFME 141

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINP 182
                R LEGE+ARTI S++ +  ARVH+ +P    F +   +P+ASV++     R++ P
Sbjct: 142 ATRYRRGLEGELARTISSLNNVKGARVHLAIPKSSVFVRDERKPSASVLVELFSGRSLEP 201

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL----GKSLSIVQAIQ 238
                  AI +LVA +VP L    +TV+D  G LL+  +M  N      GK     + ++
Sbjct: 202 G---QVMAIINLVATSVPELSKSQITVVDQKGNLLS--DMAENSALTQAGKQFDYSRRME 256

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
             +   ++  L   LG D +++ V A+++    +     ++PD    RS + S   QR+ 
Sbjct: 257 SMLTQRVHNILQPILGNDRYKAEVSADVDFSAVESTSEQFNPDQPALRSEQ-STSEQRTA 315

Query: 299 TSQPESAVTVEQNMP--------------------------------HVSDRKVPLPRSL 326
           ++ P+       N P                                 + D     P   
Sbjct: 316 SNGPQGVPGALSNQPPSPASAPQTTGGAAATAGAIQPGQPLLDANGQQIMDPATGQPMLA 375

Query: 327 ENTDKKEEQS--NYEINTKSIATTHDNYKLERLSIAVVVN--------KGRLTEVLGRSA 376
                K  QS  N+E++     T     ++ RLS++VVV+         G +T     SA
Sbjct: 376 PYPADKRNQSTKNFELDRSISHTKQQQGRVNRLSVSVVVDDQVKVNPADGAVTRAP-WSA 434

Query: 377 DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF-------LENQLFNSGTVQVSFM 429
           D+      LA   ++V  A G ++ RGD++++ +M F       +    F S   Q  F 
Sbjct: 435 DE------LARFTRLVQDAVGFDASRGDSVSVINMPFSAERGETIAEPAFYS---QPWFW 485

Query: 430 DILSRHFATVINALVFLVGTLLVTFLGLHALRR-LHNIDDAKKGEV----GGKSILSPPP 484
           DI+ +           ++G L +  L    LR  L+NI    K ++    GG   L    
Sbjct: 486 DIVKQ-----------VLGVLFILVLVFGVLRPVLNNITGNGKKQLAAFGGGDVELG--- 531

Query: 485 ISSAVTTGLMPNDNIALDSSNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
                  G + ND ++L      +  S S    +++N+  S         ++  +  R A
Sbjct: 532 -GMGGLDGELANDRVSLGGPQSILLPSPSEGYDAQLNAIKS---------LVAEDPGRVA 581

Query: 544 KILRKW 549
           +++++W
Sbjct: 582 QVVKEW 587


>gi|258514003|ref|YP_003190225.1| flagellar MS-ring protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257777708|gb|ACV61602.1| flagellar M-ring protein FliF [Desulfotomaculum acetoxidans DSM
           771]
          Length = 512

 Score =  130 bits (327), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 108/422 (25%), Positives = 193/422 (45%), Gaps = 38/422 (9%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +LD+L Q ++S + + +  ++I  + IL   +  +    F+    Y  L   LE  D   
Sbjct: 6   LLDRLKQRWQSLSQVKKAFVIIAGTGILAATLYLIT---FLTQTSYTPLMTNLEPRDAGA 62

Query: 63  ISVALSEANI-DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           I   L      DF+++D G++I VP   V + RI LA+ G+       G+ELFD+ N  G
Sbjct: 63  IEEKLKSLKYEDFKLADQGTTIMVPKEQVYEIRIKLASSGVLQGG-GLGFELFDQ-NQMG 120

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI---- 177
           ++ F Q++   RAL+ E+ RTI  +  +  ARVH+V+P    F  +  +  ASV I    
Sbjct: 121 VSDFEQQVDYQRALQEELRRTIIQLEEVEQARVHLVLPQKSVF--VDEQEPASVSIALKL 178

Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA------NEMERNILGKSL 231
           + +     +  + I  L   ++  L + +V ++D  G +L+       +E    ++ K  
Sbjct: 179 KPLAKLKPEQVKGIADLAVGSIQGLKLENVHIIDMQGHILSDTIDTENDEDSSQVINKQQ 238

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            + +  + E+E  I   L   LG D   S V AE++ + Q+I    + P  KV   +   
Sbjct: 239 QVRREYEKELEKRIQNVLDRVLGTDKAVSMVTAEMDFNKQEINTTTHGPGQKVSEQLINE 298

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           K           +     Q  P  +D       ++E+  + E  +NY+++T         
Sbjct: 299 KSQGTGLGGVTGTDAQNTQTYPTGTD-------NVESASRDESITNYQVDTTQQKVVQPP 351

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
             +++LS +VVV+ G+L+             + + +I  +VS A G +  RGD I +T++
Sbjct: 352 GTIKKLSTSVVVD-GKLSA------------TRIQQIESLVSTAIGYDQARGDQINVTNI 398

Query: 412 DF 413
            F
Sbjct: 399 AF 400


>gi|229591853|ref|YP_002873972.1| flagellar MS-ring protein [Pseudomonas fluorescens SBW25]
 gi|229363719|emb|CAY51114.1| flagellar M-ring protein [Pseudomonas fluorescens SBW25]
          Length = 593

 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 146/612 (23%), Positives = 257/612 (41%), Gaps = 115/612 (18%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L
Sbjct: 22  LSFLENLSEMTMLRQVGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMETL 81

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + A+I + +  N  ++ V +  V +AR+ LAA G+  S SN G+E+ DK    G + FM+
Sbjct: 82  AAADIAYTVEPNSGALLVKADDVARARMKLAAAGVTPSDSNIGFEILDKDQGLGTSQFME 141

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINP 182
                R LEGE+ARTI S++ +  ARVH+ +P    F +   +P+ASV++     R++ P
Sbjct: 142 ATRYRRGLEGELARTISSLNNVKGARVHLAIPKSSVFVRDERKPSASVLVELFSGRSLEP 201

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL---GKSLSIVQAIQH 239
                  AI +LVA +VP L    +TV+D  G LL+ ++ E + L   GK     + ++ 
Sbjct: 202 G---QVLAIVNLVATSVPELSKSQITVVDQKGNLLS-DQGENSALTQAGKQFDYSRRVES 257

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
            +   ++  L   LG D +++ V A+++    +     ++PD    RS       ++S +
Sbjct: 258 MLTQRVHNILQPVLGNDRYKAEVSADVDFSAVESTSEQFNPDQPALRS-------EQSTS 310

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLEN------------------------------- 328
            Q  +A    Q +P     + P P S                                  
Sbjct: 311 EQRTAANGPPQGVPGALSNQPPAPASAPQTTGGAAATAGAIQPGQPLLDANGQQIMDPAT 370

Query: 329 ---------TDKKEEQS-NYEINTKSIATTHDNYKLERLSIAVV--------VNKGRLTE 370
                     DK+ + + N+E++     T     ++ RLS++VV           G +T 
Sbjct: 371 GQPMLAPYPADKRNQSTKNFELDRSISHTKQQQGRVNRLSVSVVVDDQVKVNAADGAVTR 430

Query: 371 VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF-------LENQLFNSGT 423
               SAD+      LA   ++V  A G ++ RGD++++ +M F       +    F S  
Sbjct: 431 AP-WSADE------LARFTRLVQDAVGFDASRGDSVSVINMPFSAERGEVIAEPAFYS-- 481

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLL-----VTFLGLHALRRLHNIDDAKKGEVGGKS 478
            Q  F DI+ +    V+  LV + G L      +T  G   L       D + G +GG  
Sbjct: 482 -QPWFWDIV-KQVLGVLFILVLVFGVLRPVLNNITGNGKKQLAAFGG-SDVELGGMGG-- 536

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEI 537
                        G + ND ++L      +  S S    +++N+  S         ++  
Sbjct: 537 -----------LDGELANDRVSLGGPQSILLPSPSEGYDAQLNAIKS---------LVAE 576

Query: 538 NEERFAKILRKW 549
           +  R A+++++W
Sbjct: 577 DPGRVAQVVKEW 588


>gi|327478787|gb|AEA82097.1| flagellar MS-ring protein [Pseudomonas stutzeri DSM 4166]
          Length = 558

 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 104/360 (28%), Positives = 171/360 (47%), Gaps = 38/360 (10%)

Query: 72  IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131
           + +RI      I V    + +AR+ L A+G+   +  +GYELFDK    G + F+Q++  
Sbjct: 71  LQYRIHPQSGQILVREDQLARARLLLNAKGV-KVAQPAGYELFDKEEPLGTSQFVQDVRL 129

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPT-ASVMIRAINPSVYKSAE- 189
            R+LEGE+ART+ ++ G+  ARVH+   +  SF      P+ ASVM++ + P    S++ 
Sbjct: 130 KRSLEGELARTVMALKGVQQARVHLAQEENSSFVVSKRAPSKASVMLQ-LEPGYKLSSDQ 188

Query: 190 --AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI---QHEIEMN 244
             AI +LVA +VPNL   DV V+D  G LL+      N+ G      QA+   Q +   N
Sbjct: 189 VGAIVNLVANSVPNLKPEDVGVVDQYGALLSRG---LNVGGGPAQNWQAVEDYQQKAAAN 245

Query: 245 INKALAAFLGVDNFRSAVVAELNM-----------DTQQIREIVYDPDSKVERSIRLSKD 293
           I + LA  LG+ NFR +V A+++            DT ++R  V   +S ++R + L   
Sbjct: 246 IEQVLAPVLGLGNFRISVAADIDFSQKEETFQSYGDTPRLRNEVLRNESALDR-LALGVP 304

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
              S    P +    E   P   ++          + ++E     + +   +   H  + 
Sbjct: 305 GSLSNRPMPPAPEGEEAQQPATENKGA-------TSLREESTRQMDYDQSVVHVRHAGFA 357

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           L + S+AVV+N     E        G  D   AE+  +V +A G    RGD ++++ + F
Sbjct: 358 LRQQSVAVVLNSAAAPE-------GGWTDEARAELEAMVRSAVGFKQERGDLLSLSVLPF 410


>gi|294508650|ref|YP_003572709.1| flagellar M-ring protein [Salinibacter ruber M8]
 gi|294344979|emb|CBH25757.1| Flagellar M-ring protein [Salinibacter ruber M8]
          Length = 532

 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 109/415 (26%), Positives = 185/415 (44%), Gaps = 46/415 (11%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           +A + Q L    +G  +G      L  + +  I L +   ++ + P Y  L+  LE    
Sbjct: 5   LARIQQFLGRLSTGQQVG------LGLLAVGTIALLVGTAYWSSQPDYALLFGDLEPEAA 58

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           NR+   L E    + + + GS++ VP + + + R+  ++ G       +GYELFD+  + 
Sbjct: 59  NRVVSRLKEEGTPYELRNQGSAVYVPRASMHELRLQFSSDGT-IDDGQTGYELFDQ-GTL 116

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           G+T FMQ++   RALEGE+A+T+ SI  +  ARVH+V P+   F       +ASV++   
Sbjct: 117 GMTDFMQKLNSKRALEGELAQTVSSIGQVEGARVHLVEPEDDPFEAQQVEASASVVLSLT 176

Query: 181 NPSVYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQ 238
             S+ ++  + +  LVA AV  L    V V+D  G +L+  N  + N+   S  I   +Q
Sbjct: 177 GGSLSQAQVQGVTQLVAGAVEKLSPSQVKVIDQDGNMLSDPNAADENVQMTSTQI--DMQ 234

Query: 239 HEIEMNINKA----LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS-KVERSIRLSKD 293
             +E  + K     L   +G DN    V  EL+ D     + + DP+S  V    R+ ++
Sbjct: 235 RSVEEQLMKQGQSMLREVVGPDNAVVRVSTELDFDRTVTEKNLVDPESATVVSEERMREE 294

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
               E     S V                              N+E++  +  +      
Sbjct: 295 GGGDEAGNSNSVV-----------------------------RNFEVSRTTKRSEKSVGD 325

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
           + RL+++VVV++ R T   G    + +    +A+I  +V  A G +  RGD  TI
Sbjct: 326 VSRLTVSVVVDQERTTGPDGEPTYEPRSQEEIAKIESLVKNAVGFDEERGDRFTI 380


>gi|83815862|ref|YP_446715.1| flagellar M-ring protein FliF [Salinibacter ruber DSM 13855]
 gi|83757256|gb|ABC45369.1| flagellar M-ring protein FliF [Salinibacter ruber DSM 13855]
          Length = 532

 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 109/415 (26%), Positives = 185/415 (44%), Gaps = 46/415 (11%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           +A + Q L    +G  +G      L  + +  I L +   ++ + P Y  L+  LE    
Sbjct: 5   LARIQQFLGRLSTGQQVG------LGLLAVGTIALLVGTAYWSSQPDYALLFGDLEPEAA 58

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           NR+   L E    + + + GS++ VP + + + R+  ++ G       +GYELFD+  + 
Sbjct: 59  NRVVSRLKEEGTPYELRNQGSAVYVPRASMHELRLQFSSDGT-IDDGQTGYELFDQ-GTL 116

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           G+T FMQ++   RALEGE+A+T+ SI  +  ARVH+V P+   F       +ASV++   
Sbjct: 117 GMTDFMQKLNSKRALEGELAQTVSSIGQVEGARVHLVEPEDDPFEAQQVEASASVVLSLT 176

Query: 181 NPSVYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQ 238
             S+ ++  + +  LVA AV  L    V V+D  G +L+  N  + N+   S  I   +Q
Sbjct: 177 GGSLSQAQVQGVTQLVAGAVEKLSPSQVKVIDQDGNMLSDPNAADENVQMTSTQI--DMQ 234

Query: 239 HEIEMNINKA----LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS-KVERSIRLSKD 293
             +E  + K     L   +G DN    V  EL+ D     + + DP+S  V    R+ ++
Sbjct: 235 RSVEEQLMKQGQSMLREVVGPDNAVVRVSTELDFDRTVTEKNLVDPESATVVSEERMREE 294

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
               E     S V                              N+E++  +  +      
Sbjct: 295 GGGDEAGNSNSVV-----------------------------RNFEVSRTTKRSEKSVGD 325

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
           + RL+++VVV++ R T   G    + +    +A+I  +V  A G +  RGD  TI
Sbjct: 326 VSRLTVSVVVDQERTTGPDGEPTYEPRSQEEIAKIESLVKNAVGFDEERGDRFTI 380


>gi|311087544|gb|ADP67623.1| flagellar MS-ring protein [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 545

 Score =  130 bits (326), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 114/425 (26%), Positives = 209/425 (49%), Gaps = 37/425 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           F SG  L  +R LI+  ++    +  ++   ++ SP Y  LY  L   D   I   L+E 
Sbjct: 20  FLSGF-LKNSRFLII--LLTAAAITAVSISVWIKSPEYQVLYNHLSNEDSGSIINELNEM 76

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
            I ++ +D+   I VP   V + R+ LA   LP   S  G+EL DK   FG++ + ++I 
Sbjct: 77  KIPYQFTDSDGPILVPKDKVYEIRLRLAENNLPRGGS-IGFELLDK-EKFGISQYNEQIN 134

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVY 185
             RALEGE+ARTI+ I+ +  AR+HI       F +   + +AS+++     R +N    
Sbjct: 135 YHRALEGELARTIKKINSVKNARIHIAFSKSSLFLQDKKKSSASIILELQPGRNLNTG-- 192

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS-LSIVQAIQHEIEMN 244
               AI HL+++++ +L + ++T++D +GKLL    +E + +  S     + I+      
Sbjct: 193 -QINAIMHLISSSISDLPVENITIVDQSGKLLNQTSVEYDQVNDSQFKYTEEIETRYRNR 251

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVE-RSIR-----LSKDAQRSE 298
           I   L   +G+ N  + V A+++ + Q+  +  Y P+S  + +SIR     +  + ++S 
Sbjct: 252 IKNILEPLVGIGNIYAQVTAQIDFNAQEKTQEKYSPNSDHKNQSIRSHQIIIHNEIEKSN 311

Query: 299 TSQPESAVTVEQNMPHVS-DRKVPLPRSLENT----DKK---EEQSNYEINTKSIATTHD 350
             Q E+ + +  +  HV  +  +   ++L+N     D K   +   NYE+N     T  +
Sbjct: 312 I-QEETPIPLSNSNNHVYFNNNIKNSKNLKNNYIPVDSKINRDNTVNYELNHSVSHTKMN 370

Query: 351 NYKLERLSIAVVVN--KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
             +++RLS AV+VN  K +  + +  S  +      +  I  ++  A G +  RGD++ +
Sbjct: 371 IGEIKRLSAAVIVNFSKDKNGKFVPLSTQK------IKNIEHLIREAIGYSKARGDSVHL 424

Query: 409 TSMDF 413
            +  F
Sbjct: 425 VNASF 429


>gi|219681452|ref|YP_002467837.1| flagellar M-ring protein [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|219682008|ref|YP_002468392.1| flagellar M-ring protein [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471127|ref|ZP_05635126.1| flagellar MS-ring protein [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219621741|gb|ACL29897.1| flagellar M-ring protein [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624295|gb|ACL30450.1| flagellar M-ring protein [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|311086388|gb|ADP66469.1| flagellar MS-ring protein [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
          Length = 545

 Score =  130 bits (326), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 114/425 (26%), Positives = 209/425 (49%), Gaps = 37/425 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           F SG  L  +R LI+  ++    +  ++   ++ SP Y  LY  L   D   I   L+E 
Sbjct: 20  FLSGF-LKNSRFLII--LLTAAAITAVSISVWIKSPEYQVLYNHLSNEDSGSIINELNEM 76

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
            I ++ +D+   I VP   V + R+ LA   LP   S  G+EL DK   FG++ + ++I 
Sbjct: 77  KIPYQFTDSDGPILVPKDKVYEIRLRLAENNLPRGGS-IGFELLDK-EKFGISQYNEQIN 134

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVY 185
             RALEGE+ARTI+ I+ +  AR+HI       F +   + +AS+++     R +N    
Sbjct: 135 YHRALEGELARTIKKINSVKNARIHIAFSKSSLFLQDKKKSSASIILELQPGRNLNTG-- 192

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS-LSIVQAIQHEIEMN 244
               AI HL+++++ +L + ++T++D +GKLL    +E + +  S     + I+      
Sbjct: 193 -QINAIMHLISSSISDLPVENITIVDQSGKLLNQTSVEYDQVNDSQFKYTEEIETRYRNR 251

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVE-RSIR-----LSKDAQRSE 298
           I   L   +G+ N  + V A+++ + Q+  +  Y P+S  + +SIR     +  + ++S 
Sbjct: 252 IKNILEPLVGIGNIYAQVTAQIDFNAQEKTQEKYSPNSDHKNQSIRSHQIIIHNEIEKSN 311

Query: 299 TSQPESAVTVEQNMPHVS-DRKVPLPRSLENT----DKK---EEQSNYEINTKSIATTHD 350
             Q E+ + +  +  HV  +  +   ++L+N     D K   +   NYE+N     T  +
Sbjct: 312 I-QEETPIPLSNSNNHVYFNNNIKNSKNLKNNYIPVDSKINRDNTVNYELNHSVSHTKMN 370

Query: 351 NYKLERLSIAVVVN--KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
             +++RLS AV+VN  K +  + +  S  +      +  I  ++  A G +  RGD++ +
Sbjct: 371 IGEIKRLSAAVIVNFSKDKNGKFVPLSTQK------IKNIEHLIREAIGYSKARGDSVHL 424

Query: 409 TSMDF 413
            +  F
Sbjct: 425 VNASF 429


>gi|15616695|ref|NP_239907.1| flagellar MS-ring protein [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11386782|sp|P57175|FLIF_BUCAI RecName: Full=Flagellar M-ring protein
 gi|25304707|pir||A84938 flagellar M-ring protein [imported] - Buchnera sp. (strain APS)
 gi|10038758|dbj|BAB12793.1| flagellar M-ring protein [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 545

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 114/425 (26%), Positives = 209/425 (49%), Gaps = 37/425 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           F SG  L  +R LI+  ++    +  ++   ++ SP Y  LY  L   D   I   L+E 
Sbjct: 20  FLSGF-LKNSRFLII--LLTAAAITAVSISVWIKSPEYQVLYNHLSNEDRGSIINELNEM 76

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
            I ++ +D+   I VP   V + R+ LA   LP   S  G+EL DK   FG++ + ++I 
Sbjct: 77  KIPYQFTDSDGPILVPKDKVYEIRLRLAENNLPRGGS-IGFELLDK-EKFGISQYNEQIN 134

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVY 185
             RALEGE+ARTI+ I+ +  AR+HI       F +   + +AS+++     R +N    
Sbjct: 135 YHRALEGELARTIKKINSVKNARIHIAFSKSSLFLQDKKKSSASIILELQPGRNLNTG-- 192

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS-LSIVQAIQHEIEMN 244
               AI HL+++++ +L + ++T++D +GKLL    +E + +  S     + I+      
Sbjct: 193 -QINAIMHLISSSISDLPVENITIVDQSGKLLNQTSVEYDQVNDSQFKYTEEIETRYRNR 251

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVE-RSIR-----LSKDAQRSE 298
           I   L   +G+ N  + V A+++ + Q+  +  Y P+S  + +SIR     +  + ++S 
Sbjct: 252 IKNILEPLVGIGNIYAQVTAQIDFNAQEKTQEKYSPNSDHKNQSIRSHQIIIHNEIEKSN 311

Query: 299 TSQPESAVTVEQNMPHVS-DRKVPLPRSLENT----DKK---EEQSNYEINTKSIATTHD 350
             Q E+ + +  +  HV  +  +   ++L+N     D K   +   NYE+N     T  +
Sbjct: 312 I-QEETPIPLSNSNNHVYFNNNIKNSKNLKNNYIPVDSKINRDNTVNYELNHSVSHTKMN 370

Query: 351 NYKLERLSIAVVVN--KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
             +++RLS AV+VN  K +  + +  S  +      +  I  ++  A G +  RGD++ +
Sbjct: 371 IGEIKRLSAAVIVNFSKDKNGKFVPLSTQK------IKNIEHLIREAIGYSKARGDSVHL 424

Query: 409 TSMDF 413
            +  F
Sbjct: 425 VNASF 429


>gi|251789188|ref|YP_003003909.1| flagellar MS-ring protein [Dickeya zeae Ech1591]
 gi|247537809|gb|ACT06430.1| flagellar M-ring protein FliF [Dickeya zeae Ech1591]
          Length = 568

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/247 (32%), Positives = 132/247 (53%), Gaps = 11/247 (4%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  LY  L   D   I   L + NI +R +++G++I +P+  V + R+ LA Q
Sbjct: 46  LWARGPDYRVLYTNLNERDGGSIVSELGKMNIPYRFTESGAAIMIPADKVYETRLKLAQQ 105

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F ++I   RALEGE+ART++++  I  ARVH+ +P 
Sbjct: 106 GLPKGGA-VGFELLDQ-EKFGISQFSEQINYQRALEGELARTMETLGPIQNARVHLAIPK 163

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    P+A+V +     RA++ +      AI +LV+++V  L    VTV+D TGK
Sbjct: 164 PSLFVREQKSPSAAVTVTLQPGRALDDN---QINAITYLVSSSVAGLPADKVTVVDQTGK 220

Query: 216 LLTANEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT N+   R++    L     I+   +  I   LA  +G  N  + V A+++   ++  
Sbjct: 221 LLTQNDGSGRDLNAAQLKYANEIEGNYQRRIEAILAPVVGAGNVHAQVTAQIDFANREQT 280

Query: 275 EIVYDPD 281
           +  Y P+
Sbjct: 281 DEQYQPN 287


>gi|238752878|ref|ZP_04614343.1| Flagellar M-ring protein [Yersinia rohdei ATCC 43380]
 gi|238708917|gb|EEQ01170.1| Flagellar M-ring protein [Yersinia rohdei ATCC 43380]
          Length = 541

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 111/407 (27%), Positives = 203/407 (49%), Gaps = 39/407 (9%)

Query: 22  ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81
           +L+ A+ ILV   +  +   + +S  Y  L+   E   V ++   L +  I +RI+ +  
Sbjct: 21  LLMGAAAILVTGAIIFS--LWRSSQGYTALFGSQENIPVAQMVEVLDQEAIAYRINPDNG 78

Query: 82  SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
            + V  + +GKARI LAA+G+ +++   GYEL DK    G + F+Q +   R+LEGE+A+
Sbjct: 79  QVLVAENQLGKARILLAAKGI-TATLPVGYELMDKETMLGSSQFIQSVRYKRSLEGELAQ 137

Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIG-ARPTASVMIR-----AINPSVYKSAEAIRHLV 195
           +I +++ +  ARVH+ M +  SF     A  +ASV++R     A+ P   +   AI  LV
Sbjct: 138 SIMALTAVDYARVHLGMSEASSFAISNRAESSASVVLRLKYGQALKP---EQVGAIVQLV 194

Query: 196 AAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINKALAA 251
           A ++P +   +V V+D  G+LL+    AN      +     +   +Q   E +I   L++
Sbjct: 195 AGSMPGIKAANVRVVDQHGELLSEAYQANSSGMPSVKSGADLAHYLQSTTEKSIANLLSS 254

Query: 252 FLGVDNFRSAVVAELNMDTQQIREIV--YDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309
            +G +N+R +V  +L  D  +I E +  Y P+       R+S +  + E +  + A+ V 
Sbjct: 255 VVGANNYRISVATQL--DLSRIEETLERYGPEP------RISDENIQQENNNDDMAMGVP 306

Query: 310 ---QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
               N P      +  P ++    + + Q  Y  +       H  +KL+++++AV++NK 
Sbjct: 307 GSLSNQPVAQPGNMTAPTAV---SRSQAQRKYTYDRDIRHVRHPGFKLDKMTVAVILNK- 362

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
                    A +      LAE+ +++  A GI+ +RGD++T+  + F
Sbjct: 363 ------SAPALENWAPEQLAELKRLIEDAAGIDVKRGDSLTLNMLAF 403


>gi|311086968|gb|ADP67048.1| flagellar MS-ring protein [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 545

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 114/425 (26%), Positives = 209/425 (49%), Gaps = 37/425 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           F SG  L  +R LI+  ++    +  ++   ++ SP Y  LY  L   D   I   L+E 
Sbjct: 20  FLSGF-LKNSRFLII--LLTAAAITAVSISVWIKSPEYQVLYNHLSNEDSGSIINELNEM 76

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
            I ++ +D+   I VP   V + R+ LA   LP   S  G+EL DK   FG++ + ++I 
Sbjct: 77  KIPYQFTDSDGLILVPKDKVYEIRLRLAENNLPRGGS-IGFELLDK-EKFGISQYNEQIN 134

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVY 185
             RALEGE+ARTI+ I+ +  AR+HI       F +   + +AS+++     R +N    
Sbjct: 135 YHRALEGELARTIKKINSVKNARIHIAFSKSSLFLQDKKKSSASIILELQPGRNLNTG-- 192

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS-LSIVQAIQHEIEMN 244
               AI HL+++++ +L + ++T++D +GKLL    +E + +  S     + I+      
Sbjct: 193 -QINAIMHLISSSISDLPVENITIVDQSGKLLNQTSVEYDQVNDSQFKYTEEIETRYRNR 251

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVE-RSIR-----LSKDAQRSE 298
           I   L   +G+ N  + V A+++ + Q+  +  Y P+S  + +SIR     +  + ++S 
Sbjct: 252 IKNILEPLVGIGNIYAQVTAQIDFNAQEKTQEKYSPNSDHKNQSIRSHQIIIHNEIEKSN 311

Query: 299 TSQPESAVTVEQNMPHVS-DRKVPLPRSLENT----DKK---EEQSNYEINTKSIATTHD 350
             Q E+ + +  +  HV  +  +   ++L+N     D K   +   NYE+N     T  +
Sbjct: 312 I-QEETPIPLSNSNNHVYFNNNIKNSKNLKNNYIPVDSKINRDNTVNYELNHSVSHTKMN 370

Query: 351 NYKLERLSIAVVVN--KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
             +++RLS AV+VN  K +  + +  S  +      +  I  ++  A G +  RGD++ +
Sbjct: 371 IGEIKRLSAAVIVNFSKDKNGKFVPLSTQK------IKNIEHLIREAIGYSKARGDSVHL 424

Query: 409 TSMDF 413
            +  F
Sbjct: 425 VNASF 429


>gi|119476321|ref|ZP_01616672.1| flagellar M-ring protein FliF [marine gamma proteobacterium
           HTCC2143]
 gi|119450185|gb|EAW31420.1| flagellar M-ring protein FliF [marine gamma proteobacterium
           HTCC2143]
          Length = 562

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 110/424 (25%), Positives = 203/424 (47%), Gaps = 30/424 (7%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
           F     ++G  R L L   +   + +  A   +     Y  LY  L+  D   +   L  
Sbjct: 20  FLNGLGNIGILRQLFLMVGLAASVAMGGAIVLWSVGEEYRPLYSSLDHMDPGEVLNILQS 79

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
           + ID ++ +N  ++ V +  +  AR+ LA  G+ S   + G+E+ DK    G + FM+  
Sbjct: 80  SQIDHKVDENTGALLVAADQIHDARLKLAGAGI-SPDGSFGFEMLDKEQPLGTSQFMESA 138

Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE 189
              R LEGE+ RTI SI  +  ARVH+ +P   +F +   +PTASV +     S   + +
Sbjct: 139 RFKRGLEGELGRTIASIQAVRGARVHLAIPKTSAFIRDVRKPTASVFLDLYGGSGINTEQ 198

Query: 190 --AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEMNI 245
             AI ++VA ++P L + +VTV+D  G LL+  + +++  +  K L  V+ ++  +   +
Sbjct: 199 VRAIANMVAFSIPELTIQNVTVVDQRGNLLSNFDADQDMAMAHKQLDYVREMEGRLVKRV 258

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREI--VYDPDSKVERSIRLSKDAQRSE----- 298
           +  L   LG  NFR+ + A  N+D  Q+ +   +++PD    RS +  ++ +        
Sbjct: 259 SSILEPVLGEGNFRAEISA--NVDFTQVEQTDELFNPDLPAIRSEQTVEEGRGGGGVGGV 316

Query: 299 ----TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
               ++QP       + +  V      L  S+ +T +++   NYE++     T H   +L
Sbjct: 317 PGALSNQPPRDGQAPEQI--VDGGAAALAESV-STSRRQSVRNYELDRTISHTRHQVGRL 373

Query: 355 ERLSIAVVVNK-----GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
            RLS+AV+V+          E++  + +Q ++D    ++  +V  A G ++ RGD++ I 
Sbjct: 374 RRLSVAVLVDNTTNIDSETGEIVSVAIEQSELD----QLAILVRDAVGFDAARGDSVNII 429

Query: 410 SMDF 413
           +  F
Sbjct: 430 NSAF 433


>gi|114764044|ref|ZP_01443283.1| flagellar M-ring protein FliF [Pelagibaca bermudensis HTCC2601]
 gi|114543402|gb|EAU46417.1| flagellar M-ring protein FliF [Roseovarius sp. HTCC2601]
          Length = 546

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 137/473 (28%), Positives = 223/473 (47%), Gaps = 46/473 (9%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +L QL   +  G+  GR R+L++A+ +     +    R   + P    LY  LE      
Sbjct: 2   VLQQLATIW--GSLGGRRRVLVIAATLATIAAVLAMGRM-ASQPSMALLYAGLEQGAAGE 58

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +  AL    I + +   G +I VP       R+ LA++GLP++S N GYEL D ++ FG 
Sbjct: 59  VVAALEARGIPYEV--RGGAILVPDMQRDSLRMTLASEGLPANS-NQGYELLDGLSGFGT 115

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           TS M +    RA EGE+ARTI +   I  ARVHI       F++    P+AS+ +   N 
Sbjct: 116 TSQMFDAAYWRAKEGELARTIVASPYIATARVHIANSTANPFQR-DVSPSASISV-TTNG 173

Query: 183 SVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240
            V     A A+++LVA+AVP L   DV V+D  G L+ A   + +  G +     A+  +
Sbjct: 174 DVLSPVQARALKYLVASAVPGLMPEDVAVIDGKGGLIGAE--DDSGAGPTAEDRAALLRD 231

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDT----QQIREIVYDPDSKVERSIRLSKDAQR 296
               + + + A +G+ N     V E+++DT    + IR+  +DP+ +V  S    +++  
Sbjct: 232 ---RVQRLVEARVGLGN----AVVEVSVDTVTESETIRQRQFDPEGRVVISTDTEEESSS 284

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
           S+ S     V+V  N+P           S   + +  E+ NYE++      T     ++R
Sbjct: 285 SQDSG-GGDVSVASNLPDGEAGGGDS--SQSQSSETRERVNYEVSETMREVTRMPGAIKR 341

Query: 357 LSIAVVVNKGRLTEVLGRSADQGK-----IDSYLAEINKIVSAATGINSRRGDTITITSM 411
           L++AV+VN       L   AD  +      +  LA +  +V++A G    RGD ITI SM
Sbjct: 342 LTVAVLVNG-----TLAAGADGAEQFVPLPEGELAALRDLVASAVGFEEARGDAITIRSM 396

Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFL-VGTLLVT--FLGLHALR 461
            F   +   +G V+  +       F+  ++ +  + +G L V    LGL  +R
Sbjct: 397 PFERPEGLGTGPVEPGW-------FSMPLDPMTLIQIGVLAVVALILGLFVVR 442


>gi|238762371|ref|ZP_04623342.1| Flagellar M-ring protein [Yersinia kristensenii ATCC 33638]
 gi|238699356|gb|EEP92102.1| Flagellar M-ring protein [Yersinia kristensenii ATCC 33638]
          Length = 541

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 113/430 (26%), Positives = 211/430 (49%), Gaps = 46/430 (10%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +LD++ Q   +   LG+ +  IL   + + +   +    +  S  Y  L+   E   V +
Sbjct: 1   MLDKIKQQLPA-IRLGKNQKSILMGAMALLVTGAIIFSLWRGSQGYTALFGSQEHIPVTQ 59

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +   L    I +RI+ +   I V  + +G+ARI LAA+G+ +++  +GYEL D+    G 
Sbjct: 60  VVEVLDGEAIAYRINPDNGQILVAENQLGRARILLAAKGI-TATLPTGYELMDQETMLGS 118

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR--PTASVMIRAI 180
           + F+Q +   R+LEGE+A++I +++ +  ARVH+ M +  SF  I  R   +ASV++R  
Sbjct: 119 SQFIQNVRYKRSLEGELAQSIMALTAVDYARVHLGMSEASSF-AISNRSESSASVILRLK 177

Query: 181 NPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIV 234
                K+ +  AI  LVA ++P +   +V V+D  G+LL+    AN      +     + 
Sbjct: 178 YGQTLKTEQVGAIVQLVAGSIPAMKAANVRVVDQHGELLSEAYQANSKGMTNVKSGAELA 237

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI------ 288
             +Q   E +I   L++ +GV+N+R +V  +L++             S+VE ++      
Sbjct: 238 HYLQSTTEKSIANLLSSVVGVNNYRISVATQLDL-------------SRVEETLERYGAE 284

Query: 289 -RLSKDAQRSETSQPESAVTVE---QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKS 344
            R+S +  + E    + A+ +     N P    R    P  +    + + Q  Y  +   
Sbjct: 285 PRVSDENIQQENGNEDMAMGIPGSLSNQPSAQPRNTNAPAMM---SRSQAQRKYAYDRDI 341

Query: 345 IATTHDNYKLERLSIAVVVNKGRLTEVLGR-SADQGKIDSYLAEINKIVSAATGINSRRG 403
               H  +KLE++++AV++NK      L + +A+Q      L E+ +++  A GI+ +RG
Sbjct: 342 RHVRHPGFKLEKMTVAVILNKS--APALDKWTAEQ------LNELKRLIEDAAGIDVKRG 393

Query: 404 DTITITSMDF 413
           D++T+  + F
Sbjct: 394 DSLTLNMLAF 403


>gi|255264100|ref|ZP_05343442.1| flagellar M-ring protein FliF [Thalassiobium sp. R2A62]
 gi|255106435|gb|EET49109.1| flagellar M-ring protein FliF [Thalassiobium sp. R2A62]
          Length = 531

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 156/543 (28%), Positives = 247/543 (45%), Gaps = 61/543 (11%)

Query: 25  LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSIS 84
           LASV +   +LFM      ++P Y  LY  LE S    +  +L   +  + I   G SI 
Sbjct: 21  LASVAVFLAVLFMTR--VASTPTYALLYSGLESSASGEVIASLEAQSAAYEI--RGDSIF 76

Query: 85  VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144
           V S+   + R+ LA+ GLP  +   GYEL D +  FG TS M +    RA EGE+ARTI 
Sbjct: 77  VDSAKRDQLRMTLASAGLPKPTVQ-GYELLDTLTGFGTTSQMFDAAYWRAKEGELARTIV 135

Query: 145 SISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-AINPSVYKSAEAIRHLVAAAVPNLD 203
           +   I  ARVHI       F++  A  TASV +   +     +  +A+++LVA+AV  + 
Sbjct: 136 ATPAIRTARVHISNGTSRPFQRNQAT-TASVTVNTGVAGLTTQQIKALQYLVASAVAQMS 194

Query: 204 MGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVV 263
             DV ++D    L++   +  +   ++     +    I+ NI + L A +G  N     V
Sbjct: 195 PEDVAIIDDQRGLVSGAGLASDPTTRT-----SETENIKRNIERLLEARVGFGN----AV 245

Query: 264 AELNM----DTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRK 319
            ELN+    D + I E   DP+S+V  S   +++   S T Q   +VTV  N+P   D  
Sbjct: 246 VELNVQRTTDIETILERRVDPNSRVAISTE-TEERSTSSTDQNGGSVTVASNLPD-GDAA 303

Query: 320 VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQG 379
                S     +  E+ N+E++      T    +++R+++AV+V+     +  G +  + 
Sbjct: 304 ADSGTSNSQNSESRERVNFEMSETQREVTRGPGQVQRITVAVLVDGVNGLDSDGNTTIEP 363

Query: 380 KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDIL-SRHFAT 438
           + +  LA++ ++V++A G +  RGD ITI S+ F    L   GTV  S  ++  S +  +
Sbjct: 364 RSEEELADLRELVASAIGFDENRGDKITIRSLAF--EPLPVEGTVAGSSKNLFDSLNLMS 421

Query: 439 VINALVFLVGTLLVTFLGLHALR---------RLHNIDDAKK---GEVGGKSILSPPPIS 486
           +I      V   +   LGL  +R         R   IDD+     GE+     L      
Sbjct: 422 LIQ---IAVAASVAIVLGLFVVRPVLMSGRAYRPALIDDSGPLLDGEIDTSLGL------ 472

Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546
           SA   G M N + A+  ++           S  N  V     +RL  +IE  +E    IL
Sbjct: 473 SATEIGEMKNVDGAVQVAD----------PSMPNDPV-----VRLRALIEERQEETVDIL 517

Query: 547 RKW 549
           R W
Sbjct: 518 RDW 520


>gi|254499113|ref|ZP_05111803.1| truncated flagellar M-ring protein FliF [Legionella drancourtii
           LLAP12]
 gi|254351652|gb|EET10497.1| truncated flagellar M-ring protein FliF [Legionella drancourtii
           LLAP12]
          Length = 403

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/361 (26%), Positives = 174/361 (48%), Gaps = 42/361 (11%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110
           ++  L+  D N++   L + NI +++   G  I +   +V K R+ +   GL   + N G
Sbjct: 1   MFSHLDEQDANKVLSQLEQENISYQVRHGGQDILIDKDLVAKTRLKIMGSGL-QLAGNVG 59

Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170
           +ELFDK N FG+T F Q+I   RAL+GE+ RTI S   I  ARVH+V+P+   F     +
Sbjct: 60  FELFDK-NDFGMTDFSQKINYQRALQGELERTISSFDEIRQARVHLVIPETHLFDHEENQ 118

Query: 171 PTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS 230
           P A++ +        +   +I+ LVAA+V +L + +V V+D  G  L+  + E ++    
Sbjct: 119 PKAAITLHLKQALTNQQVRSIQQLVAASVAHLSLKNVVVVDQNGNTLS--QTEEDLSSTH 176

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290
            +  + I+H +   + + L      +     + AE+N D  Q RE++  P +K +  I  
Sbjct: 177 FASKKNIEHYLNDKVTQMLHKIFAKNQVMVKINAEINYDELQ-RELI-KPQTKGQ--ITH 232

Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
            K+ + S         TV++      ++ + L ++ E   +K      E+  ++  T   
Sbjct: 233 EKEIKHS---------TVDKKGKQKGNQDLTLEKTYEFGSEK------ELFKRASGT--- 274

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
              +ERLSI+VV+              Q      +A++ +++    G N +RGD I++ +
Sbjct: 275 ---IERLSISVVI-------------PQYTDAKTIAQVQRLIKNTVGFNEKRGDVISVEA 318

Query: 411 M 411
           +
Sbjct: 319 L 319


>gi|308050036|ref|YP_003913602.1| flagellar M-ring protein FliF [Ferrimonas balearica DSM 9799]
 gi|307632226|gb|ADN76528.1| flagellar M-ring protein FliF [Ferrimonas balearica DSM 9799]
          Length = 540

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 110/405 (27%), Positives = 202/405 (49%), Gaps = 37/405 (9%)

Query: 22  ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81
           I ++A+V+   I+L +    +  S  Y  LY   E  D   I   L    I +R+  +  
Sbjct: 41  IAVMATVVATVIVLVL----WTASRGYRPLYGSQEGFDSAEIIEVLEAEKIPYRMQADSG 96

Query: 82  SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
            I V    +G+AR+ LAA+G+  +   +G EL DK  + G + F++E      LEGE++R
Sbjct: 97  QILVLEDQLGRARMTLAARGI-RAKMPAGMELLDKAGALGSSQFLEEARYRLGLEGELSR 155

Query: 142 TIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAA 198
           TI ++  + +ARVH+ +P    F R+   +P+A+VM+   + +       EAI +LV  A
Sbjct: 156 TIMAMKAVRSARVHLAIPKRTLFIRQQPEKPSAAVMLELYSGATLSRDQVEAIVNLVVGA 215

Query: 199 VPNLDMGDVTVLDSTGKLLTAN-EMERNIL---GKSLSIVQAIQHEIEMNINKALAAFLG 254
           V  + +  V+V+D  G+LL+A+ E+ + +     + L+  Q ++  +    +  L   LG
Sbjct: 216 VTAMPVDAVSVVDQNGRLLSADLELAQELARSGERQLTYNQQMEQALNQRASDMLQPILG 275

Query: 255 VDNFRSAVVAELNMDT-QQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE---Q 310
             N+R  V A +N D  ++ RE V DP++ V     ++++A RS+T     A+ +     
Sbjct: 276 YGNYRVQVAARVNFDQIEETREQV-DPENTV-----VTREASRSDTRGGNLAIGIPGALS 329

Query: 311 NMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK--GRL 368
           N P  ++         +N   + E+  +E +     T     +LERLS++V++N   G+ 
Sbjct: 330 NQPPATNADEEEAAPAQNLSSESER-YFETSRAVRHTKFQQAQLERLSVSVLLNSEAGQW 388

Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           +        Q ++D    ++ ++V  A G  + RGD++++ +  F
Sbjct: 389 S--------QAQLD----QLGQLVQDAIGFEAARGDSLSLHAFPF 421


>gi|91200223|emb|CAJ73267.1| similar to flagellar MS ring protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 584

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 124/448 (27%), Positives = 215/448 (47%), Gaps = 36/448 (8%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
            I+ S+ L  ++  +    +   P +  LY +L   +   I   L EANI +RIS NG++
Sbjct: 25  FIMISLTLSFLIGIVGVMQWARKPDFGLLYGELSPKESGEIINHLREANIPYRISGNGTT 84

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  + + R+  A++GLP     +GYEL DKV  FG + F+Q+I   RA++GE+A+T
Sbjct: 85  ILVPNDKIYEMRLKFASEGLPHE--QTGYELLDKVG-FGSSDFIQKINYRRAIQGELAKT 141

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           I+ +  +  A+VH+ +P+   F +    PTASV+++       K     +I HLV+++V 
Sbjct: 142 IKHLDFVDWAQVHLAIPEKSLFVEDEKPPTASVVLKLKTGGKLKPERVASIVHLVSSSVE 201

Query: 201 NLDMGDVTVLDSTGKLLTANEMERNILGKS---LSIVQAIQHEIEMNINKALAAFLGVDN 257
            L   +VTV D+ G LL+  E   +  G S   L I + I+          L   +G   
Sbjct: 202 GLIPENVTVTDTRGNLLSEKESPFSQTGASNDQLEIKKKIEEYYVAKAQDMLDRIVGAGK 261

Query: 258 FRSAVVAELNMDTQQIREIVYDPDSKVER----SIRLSKDAQRSETSQPESAVTVEQNMP 313
               V A+L+      ++I +DP+ +V +    + ++S     S    P   +    N+ 
Sbjct: 262 SVVRVSADLDFRHVDEKQIEFDPERRVPKVQTVTTKVSGGTPFSGGGVP--GMQANLNLS 319

Query: 314 HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373
             S  +       E T     Q+ YE++      +     L+RLS+AV+V+ G+  ++  
Sbjct: 320 QSSMLQSSGSSEEEET----AQTQYELSKVERMVSDHGANLKRLSVAVLVD-GKYEKI-- 372

Query: 374 RSADQGKI-DSYLAEINK-------IVSAATGINS-RRGDTITITSMDFLENQLFNSGTV 424
             ++ GKI  +Y++  N+       +V  A G+N   R D+  I ++ F E        +
Sbjct: 373 -ESEDGKIQQTYVSRNNEEMKGIASLVKQALGVNMVSRNDSFEIQNVQFYEADYAEEEAI 431

Query: 425 -----QVSFMDILSRHFATVINALVFLV 447
                Q  FM  L+++ +  I  L+FL+
Sbjct: 432 LKKEQQKEFMLKLAKNGSLGITVLMFLM 459


>gi|148980292|ref|ZP_01815979.1| flagellar M-ring protein [Vibrionales bacterium SWAT-3]
 gi|145961311|gb|EDK26621.1| flagellar M-ring protein [Vibrionales bacterium SWAT-3]
          Length = 557

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 122/435 (28%), Positives = 199/435 (45%), Gaps = 38/435 (8%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            + +S  +  LY K    D +++   L E +I +++S +   I VP   V K R+ LA++
Sbjct: 58  LWTSSERFRPLYSKSANFDSSQVLHMLDEESIRYQLSQDDGQILVPEGDVAKIRMILASK 117

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GL      SG++  D   S G + FM+      ALEGE+AR+I ++S +  ARVH+ +P 
Sbjct: 118 GL-KEQLPSGFDSLDSSKSLGESQFMENARYRHALEGELARSITTMSAVSLARVHLAIPK 176

Query: 161 MGSF-RKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
              F R    +P ASV++  IN    K    E+I +LV+ AV  L    V V+D  G+LL
Sbjct: 177 ESLFMRDDAEQPRASVIVHIINGMDLKPTQVESIINLVSGAVIGLKSEHVRVVDQHGRLL 236

Query: 218 TANEMERNILGKSLSIVQAIQHEIEMNINKALAA--------FLGVDNFRSAVVAELNMD 269
           + +    +I     ++    Q + + N+ K L A         LG  NFR  + ++++  
Sbjct: 237 SNDATVGDI-----TVTTGKQSDYKRNLEKTLVAQATDMLTPILGAANFRVQIASDIDFS 291

Query: 270 -TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
             ++  EI  DP   V R   L  D   +E+S          N P V+D + P P     
Sbjct: 292 KVEETEEIYADP---VVRKETLLSDM--NESSMALGIPGALSNTPPVTDGE-PQPEPNAK 345

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
            ++ E   +Y ++ K   T H    L+ LS+++VVN          + +Q      L  +
Sbjct: 346 VNRSETSRDYAVSGKVRHTQHQQGVLQNLSVSIVVND-------LANPNQTWTPEELTNV 398

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
             +V +A G N+ RGD+I  T   F    +  S   Q       + H   ++  L +L+G
Sbjct: 399 ENVVRSAIGFNTERGDSIHTTHFPF----VIASIPEQAPVAWFENTH---IMQPLKYLLG 451

Query: 449 TLLVTFLGLHALRRL 463
            +L   + +  LR L
Sbjct: 452 VMLSGLMIMVVLRPL 466


>gi|242238981|ref|YP_002987162.1| flagellar MS-ring protein [Dickeya dadantii Ech703]
 gi|242131038|gb|ACS85340.1| flagellar M-ring protein FliF [Dickeya dadantii Ech703]
          Length = 569

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 112/453 (24%), Positives = 210/453 (46%), Gaps = 53/453 (11%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  SP Y  LY  L   D   +   L++ N+ +R +DNG +I +PS  +   R+ LA  G
Sbjct: 48  WAKSPDYRVLYSNLNDRDGGEVVTQLTQMNVPYRFADNGGAILIPSDKIYDTRLRLAQLG 107

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   +  G+EL D+   FG++ F ++I   RALEGE++RTI+++  + +ARVH+ +P  
Sbjct: 108 LPKGGA-VGFELLDQ-EKFGISQFSEQINYQRALEGELSRTIETLGPVHSARVHLAIPKP 165

Query: 162 GSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
             F +    P+ASV +     RA++        AI ++V+++V  L   +VTV+D  G+L
Sbjct: 166 SLFVREQKSPSASVTLNLQPGRALDEG---QINAIVYMVSSSVSGLPPENVTVVDQNGRL 222

Query: 217 LTANEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           L+  +   R++    L     ++   +  I   L   +G+ N  + V A+++   ++  +
Sbjct: 223 LSQTDAAGRDLNAAQLKYATEVEGRYQRRIEAILTPIVGMGNVHAQVTAQIDFSNREQTD 282

Query: 276 IVYDPDSKVE-----------------RSIRLSKDAQRSETS-QPESAVTVEQNMPHVSD 317
             Y P+                     R+I     A  ++ S  P + VT   N  + ++
Sbjct: 283 EQYQPNQTPNQAAVRSQQSSQSEQLGGRNIGGVPGALSNQPSATPTAPVTTPGNQTNQNN 342

Query: 318 RKVPL--------------PRSLENTDKKEEQS-NYEINTKSIATTHDNYKLERLSIAVV 362
                                 L++++ + + + NYE++     T      ++RLS+AVV
Sbjct: 343 ASQTNAANNASAGAQAGTSASGLQSSNTRRDSTINYEVDRTIRHTKQSAGNVQRLSVAVV 402

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           VN    +E  G++A     +  + +I  +     G +S RGDT+ + +  F E      G
Sbjct: 403 VNYALNSE--GKAA--ALSEEQVKQIESLTRETMGFSSDRGDTLNVVNAPFNE---VTDG 455

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455
           + ++ F     + F  ++ ++   +  LLV ++
Sbjct: 456 SGELPFWQ--KQAFLDLVTSIGKWLLVLLVAWI 486


>gi|163856458|ref|YP_001630756.1| flagellar MS-ring protein [Bordetella petrii DSM 12804]
 gi|163260186|emb|CAP42488.1| flagellar M-ring protein FliF [Bordetella petrii]
          Length = 559

 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 123/460 (26%), Positives = 202/460 (43%), Gaps = 69/460 (15%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  L+  L+  D   I  AL + N+ +R S +G ++ VP+  V   R+ LA Q
Sbjct: 45  MWGREPDYKVLFANLDDRDGGAIVSALGQMNVPYRFSGDGRALLVPADRVYATRMQLAGQ 104

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   S  G+EL D    FG + F ++I   R LEGE+AR+I++++ + +ARVH+ +P 
Sbjct: 105 GLPRGGS-VGFELLDNAR-FGASQFAEQINYQRGLEGELARSIEAMNTVQSARVHLALPR 162

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    PTASV++          A+  A+  LVA++VP+L   +++++D  G+LL+
Sbjct: 163 QSLFVRDRQAPTASVLLHLYPGRSLGDAQVAAVAWLVASSVPDLTAENISIVDQNGRLLS 222

Query: 219 ANEMERNILGKSLSIVQA-IQHEIEM----NINKALAAFLGVDNFRSAVVAELNMDTQQI 273
           A   E    G+ L   Q+ ++ +IE      I   L   +G  N ++   AE++   ++ 
Sbjct: 223 APLGE----GRGLDADQSRLRRDIEQRTVERILTILNPLVGPGNVQAQASAEMDFARREQ 278

Query: 274 REIVYDPDSKVERSIRLSKDAQRS--------------ETSQPESAVTV----EQNMPHV 315
              VY P+ +  ++   SK    S               ++QP +A           P  
Sbjct: 279 TSEVYRPNQEPGQAAVRSKQTSDSLQTGIDPAQGVPGALSNQPPAAAQAPIVNPPAAPQA 338

Query: 316 SDRKVP------------------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
           +    P                   PR L   ++ +   NYE++            L+RL
Sbjct: 339 AQGGQPGQLAQAGQNAAQGAATQAAPR-LPTNNRNDATINYEVDRTISHVKQPVGMLKRL 397

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           S+AVVVN   L +  G    Q   +  L ++  +V  A G +  RGD++ +       N 
Sbjct: 398 SVAVVVNY--LPDSSGEP--QPLPEEELTKLTNLVREAMGYSEARGDSLNLV------NS 447

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457
            FN   V+  F              L+ LV T+L    GL
Sbjct: 448 QFNDKPVKPPFWRDPE---------LLDLVKTVLAWVFGL 478


>gi|146277680|ref|YP_001167839.1| flagellar M-ring protein FliF [Rhodobacter sphaeroides ATCC 17025]
 gi|145555921|gb|ABP70534.1| flagellar M-ring protein FliF [Rhodobacter sphaeroides ATCC 17025]
          Length = 572

 Score =  127 bits (319), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 124/440 (28%), Positives = 199/440 (45%), Gaps = 44/440 (10%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            ++ QL QF   G   G  R +  A VIL   +L +A    +  P    LY  L  ++  
Sbjct: 23  GMVSQLRQF---GDQPGLRRAMP-AIVILSVTVLALAGWILMREPSRVTLYPGLPEAEKA 78

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           R+   L+   I   I +    ++VP     +AR+ LAAQGLP    +    L D     G
Sbjct: 79  RVIDTLTGGGIAAVIDERTGEVAVPGGDYHRARMLLAAQGLPQGLPDGNAMLSDL--PMG 136

Query: 122 LTSFMQEITRVR-ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
            TS   E  R+R A E ++AR+I  IS + AARVH+ +P+  +F +    P ASV ++  
Sbjct: 137 -TSKSVETARLRQAQELDLARSITEISAVSAARVHLALPERSAFLRDSQPPRASVFLQVA 195

Query: 181 NPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQ 238
                  A  EAI +LV+++VP +   DVTV+D  G+LL+    +  +L       + +Q
Sbjct: 196 PGRALDGAQVEAIVNLVSSSVPGMARQDVTVVDQMGRLLSRGSDDPAVLLND----RQLQ 251

Query: 239 HEIEMN------INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292
           H ++M       I   L+   G  N    V  +++   Q+IRE   DPD    R+  LS+
Sbjct: 252 HRVQMETLYRNRIESLLSPITGPGNLAVQVTIDMDFTRQEIREEQVDPD----RTAILSE 307

Query: 293 DAQRSETSQPES--------------AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNY 338
            +Q  E++ P++              A   E   P  +    P  RS      +    N+
Sbjct: 308 QSQVEESADPQARGIPGAVANAPPPEAALAEGAPPTEAGAAPPALRSRSQNSTR----NF 363

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI--DSYLAEINKIVSAAT 396
           EI+ K   T     ++ R+S AVV+            A    +  ++  A+++++  +A 
Sbjct: 364 EISRKVETTLPATARIARVSAAVVIRAQPQPAPADPEAPSPPLLPEALQADLDRLTRSAI 423

Query: 397 GINSRRGDTITITSMDFLEN 416
           G +  RGD +TIT+  FL+ 
Sbjct: 424 GFDETRGDVVTITAQPFLDT 443


>gi|146309431|ref|YP_001189896.1| flagellar MS-ring protein [Pseudomonas mendocina ymp]
 gi|145577632|gb|ABP87164.1| flagellar M-ring protein FliF [Pseudomonas mendocina ymp]
          Length = 559

 Score =  127 bits (319), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 113/389 (29%), Positives = 183/389 (47%), Gaps = 45/389 (11%)

Query: 48  YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           +  LY   E      +   L    I +R+      + V    +G+AR+ LAA+G+     
Sbjct: 47  FRPLYGTGEAYPAAEVMQVLDGDAISYRLHPQSGQVLVREDQLGRARMLLAAKGV-QVKV 105

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
            +GYELFDK    G + F+Q++   R+LEGE+ART+ ++ G+  ARVH+ + +  SF  +
Sbjct: 106 PAGYELFDKDEPLGTSQFVQDVRLKRSLEGELARTVMALKGVEGARVHLALQESSSF-VV 164

Query: 168 GARPT--ASVMIRAINPSVYKSAE----AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE 221
           G R    ASVM++ + P  YK A     AI +LVA +VP LD  +V V+D  G LL+   
Sbjct: 165 GKREPGKASVMLQ-LAPG-YKLAPEQVSAIVNLVAGSVPQLDAANVQVVDQYGALLS--- 219

Query: 222 MERNI--LG---KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
             R I  LG   ++  +V   Q++   N    LA  LG  N+R +V A+++   ++    
Sbjct: 220 --RGIDTLGGPVQNWQVVDDYQNKAVANAEAVLAPVLGNGNYRISVAADIDFSQKEETFQ 277

Query: 277 VYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKE--- 333
            Y        + RL  +  R E+   + A+ V  ++ +   +  P P   +   + E   
Sbjct: 278 AYG------ETPRLRNEVLRDESVLDQLALGVPGSLANRPPQPAPEPVEGQPPAEGEAAN 331

Query: 334 -------EQSNYEINTKSIAT--THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY 384
                  ++SN +++     T   H  + L + SIAVV+N     E        G     
Sbjct: 332 KAATSLRKESNRQLDYDQSVTHVKHAPFSLRQQSIAVVLNAAAAPE-------GGWTAEA 384

Query: 385 LAEINKIVSAATGINSRRGDTITITSMDF 413
            AE+  +V +A G N  RGD +T++   F
Sbjct: 385 RAELEAMVKSAVGFNQARGDLLTLSVFPF 413


>gi|285018180|ref|YP_003375891.1| flagellar biosynthesis lipoprotein flif [Xanthomonas albilineans
           GPE PC73]
 gi|283473398|emb|CBA15903.1| probable flagellar biosynthesis lipoprotein flif [Xanthomonas
           albilineans]
          Length = 569

 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 105/394 (26%), Positives = 180/394 (45%), Gaps = 25/394 (6%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           F+   P Y  LY  L+       +  L  A I F++  +  +I+VP   +  AR+ LA  
Sbjct: 49  FWSQKPDYTPLYTGLDEKGTAEATDLLRTAQIPFKLDPSTGAITVPQEKLYDARLKLAGS 108

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GL  SS N G+E+ +K   FG++ F++      ALE E+ARTI S+  +  ARVH+ +P 
Sbjct: 109 GLTDSSGNMGFEVMEKDPGFGVSQFVENARYQHALETELARTIASLRPVREARVHLAIPK 168

Query: 161 MGSFRKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
             +F +     +ASV+  +R  N       +AI ++VA+++P+L    VTV+D +G++LT
Sbjct: 169 PSAFTRQREAASASVVLELRGGNTLERNQVDAIVNMVASSIPDLSPNRVTVVDQSGRMLT 228

Query: 219 ANEMERNILGKSLSIVQAIQHEIEMN--INKALAAFLGVDNFRSAVVAELNMD-TQQIRE 275
             +   +    +    Q  + E   N  I + L    G       V  +++   T++ RE
Sbjct: 229 IADPNSDAALNAAQFDQIRRQESSFNQRIRELLEPMTGPGRVNPEVSVDMDFSVTEEARE 288

Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQ--PESAVTVEQNMPHVSD-------------RKV 320
           + Y+ D    RS ++S     S TS+  P+       N P  +                 
Sbjct: 289 L-YNGDPPKLRSEQVSD----SNTSKGGPQGVPGATSNSPGATPTGQPAAAGTPAAAAGA 343

Query: 321 PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380
               +      K    NYE++     T     +++R+S+AV+V+        G+  +Q  
Sbjct: 344 NQQAANPTESSKSATRNYELDRTLQHTRQPAGRIKRVSVAVLVDHVPRPGPKGKMVEQAL 403

Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
             + L  I  +V  A G N+ RGDT+++ +  F+
Sbjct: 404 SAAELTRIEGLVKQAVGFNAERGDTVSVMNAPFV 437


>gi|256370955|ref|YP_003108779.1| flagellar M-ring protein FliF [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256007539|gb|ACU53106.1| flagellar M-ring protein FliF [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 513

 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 121/459 (26%), Positives = 219/459 (47%), Gaps = 50/459 (10%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L+ F SG + G+  ++++   ++V I + +A+    +SP Y  L+  L   D   I+  L
Sbjct: 14  LRRFASGFTTGQKAVVMVGIALVVAIAVALAS--LTSSPSYGVLFSGLSAQDAGSITAKL 71

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS--F 125
             A + + +++ G+++ VP ++V + R+ LA  GLPS ++         +N   +TS   
Sbjct: 72  QSAGVPYELTNGGTTVLVPQNLVDQERVSLAEAGLPSQTAG-----LTSLNGLSITSSQI 126

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG--ARPTASVMIRAINPS 183
            Q+     AL+ ++A+TI++I+G+ +A+V++ +P   +F  IG  ++P+ASV++  ++  
Sbjct: 127 TQQADYQAALQSQLAQTIEAINGVQSAQVNLALPPTDAF-AIGQSSQPSASVIVT-LDAG 184

Query: 184 V---YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240
           V    +  EAI HLVA+A+P ++  DVTV D  G +L A  +  N  G   S  Q    +
Sbjct: 185 VSLTSQQVEAIVHLVASAIPGMNANDVTVADQNGDVLAAPGLGVNAQGAGQS-AQGFDSQ 243

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMD-----TQQIREIVYDPDSKVERSIRLSKDAQ 295
           +E +I   L   +G  N    V A L+ +     TQ I+     P +   ++   ++   
Sbjct: 244 LEASIQSMLDTIVGPGNANVRVAATLSTNQVTTKTQSIQTQKGKPLTTPTQTQTQTQTFT 303

Query: 296 RSETSQPESAVT--VEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
            + T    +  T  +      VS  K           +    + Y I   +         
Sbjct: 304 GNGTVPGGTLGTTGIATTGNQVSTYK-----------QTSSTTQYAIGQVTQTVQQAPGA 352

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           ++RLS+AV VN    + V G S         LA++ ++V+AA GI   RGDT+++ ++ F
Sbjct: 353 IQRLSVAVAVN----SHVKGLS---------LAKLRQVVAAAAGIVPARGDTLSVVAVPF 399

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452
                  SG     F  IL    A V+  ++  +G +L+
Sbjct: 400 PALATTPSGAGSSLFGSILG--IAKVVLLVLGALGAILL 436


>gi|221069298|ref|ZP_03545403.1| flagellar M-ring protein FliF [Comamonas testosteroni KF-1]
 gi|220714321|gb|EED69689.1| flagellar M-ring protein FliF [Comamonas testosteroni KF-1]
          Length = 568

 Score =  127 bits (318), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 95/344 (27%), Positives = 172/344 (50%), Gaps = 25/344 (7%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           F   P Y  L+  +   D   I   L++ N+ ++ S+ G +I +P+  V   R+ LA QG
Sbjct: 56  FYRQPDYKMLFSNVSDKDGGAIVAQLTQMNVPYKYSEGGGAILIPADRVHDVRLKLATQG 115

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP  S  +G+EL +  + FG+T F + +   R LEGE+ R+I +++ + +ARVH+ +P+ 
Sbjct: 116 LPKGSV-TGFELMEN-SKFGITQFQERLNFQRGLEGELTRSILALNAVQSARVHLALPNQ 173

Query: 162 GSFRKIGARPTASVMIRAINPS-VYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
             F +   +P+ASV++ +++P  +   A+   I HLVA++VP ++   V+V+D TGKLL+
Sbjct: 174 NGFFREQQKPSASVLL-SLHPGRMLDRAQIAGIVHLVASSVPEMEPSAVSVVDDTGKLLS 232

Query: 219 ANEMERNILG---KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
            +  + N  G   +     Q ++ +    I   L   +G +N ++ V AEL+    +   
Sbjct: 233 QSP-DGNAGGVDMQQFLYTQQVEQQYVRRILDILEPVVGKNNVKAQVSAELDFSQTESTS 291

Query: 276 IVYDPDSKVERSIRLSKDAQRS---ETSQPESAV--TVEQNMPHVSDRKV----PLPRSL 326
             + P+   +     S+    +   +T+ P + V        P  S   +    P P++ 
Sbjct: 292 EQHRPNQSTDGGAVRSQQVMETNGDKTATPPTGVPGATSNQPPQNSTAPINGANPAPQAA 351

Query: 327 ------ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
                    +K+E  +NYE++     T      ++RL+ AVVVN
Sbjct: 352 GAGQGNAQGNKRESITNYEVDKTVKVTRGSTGTVKRLTAAVVVN 395


>gi|325918317|ref|ZP_08180454.1| flagellar basal-body M-ring protein/flagellar hook-basal body
           protein FliF [Xanthomonas vesicatoria ATCC 35937]
 gi|325535457|gb|EGD07316.1| flagellar basal-body M-ring protein/flagellar hook-basal body
           protein FliF [Xanthomonas vesicatoria ATCC 35937]
          Length = 574

 Score =  126 bits (317), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 133/569 (23%), Positives = 249/569 (43%), Gaps = 38/569 (6%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
           Q+F    SL  TR L + ++I + +   +A  F+   P Y +LY  L+       +  L 
Sbjct: 19  QWFDRVRSLQITRKLTMMAMIALAVGAGLAVFFWSQKPGYQSLYTGLDEKGNAEAADLLR 78

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
            A I F+I     +ISVP   +  AR+ LA  GL    +  G+EL +K   FG++ F++ 
Sbjct: 79  TAQIPFKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQFVEN 138

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYK 186
                ALE E++RTI ++  +  ARVH+ +P   +F +     +ASV+  +R        
Sbjct: 139 ARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQGLERN 198

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN-- 244
             +AI +LVA+++P++    VTV+D +G++L+  +   +    +    Q  + E   N  
Sbjct: 199 QVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESSYNQR 258

Query: 245 INKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           I + L    G       V  +++    ++ RE+ Y+ +    RS ++S D+  S T  P+
Sbjct: 259 IRELLEPMTGPGRVNPEVSVDMDFSVVEEAREL-YNGEPAKLRSEQVS-DSSTSATG-PQ 315

Query: 304 SAVTVEQNMP--------------HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
                  N P                +        +      K    NYE++     T  
Sbjct: 316 GPPGATSNSPGQPPAPAVAGAPGTPAAANGQAAAPAAPTESSKSATRNYELDRTLQHTRQ 375

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
              +++R+S+AV+++        G+  +Q    + L  I  +V  A G ++ RGDT+++ 
Sbjct: 376 PAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQAVGFDAARGDTVSVM 435

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL--GL--HALRRLHN 465
           +  F+   +  +G     + +        V N L  LVG ++V  L  G+    LR+L  
Sbjct: 436 NAPFVREAV--AGEEGPKWWED-----PRVQNGLRLLVGAVVVLALLFGVVRPTLRQLTG 488

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
           +   K  E G  +  +P     +    ++  DN  +     D     +  ++ I    + 
Sbjct: 489 VTAVKDKERGAGNDGTP----QSADVRMVNEDNDLMPGLEDDTAQIGQEKKTPIALPDAY 544

Query: 526 QSDLRLL-HMIEINEERFAKILRKWARSE 553
           +  +R+    ++ + +R A++++ W  SE
Sbjct: 545 EERMRVAREAVKADSKRVAQVVKGWVASE 573


>gi|330899425|gb|EGH30844.1| flagellar MS-ring protein [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 319

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/275 (30%), Positives = 139/275 (50%), Gaps = 11/275 (4%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92
           + +  A   +   P Y  LY  L   D  +I   L+ ANI++ +  N  ++ V S  V +
Sbjct: 49  VAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTLTAANINYTVEPNSGALLVKSDDVQR 108

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
           ARI LA  G+  + +N G+E+ DK    G + FM+     R LEGE+ARTI +++ +  A
Sbjct: 109 ARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFMEATRYRRGLEGELARTISALNNVKGA 168

Query: 153 RVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDV 207
           RVH+ +P    F +   +P+ASV++     R++ PS      AI +LVA +VP L    +
Sbjct: 169 RVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEPS---QVMAIINLVATSVPELSKSQI 225

Query: 208 TVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE 265
           TV+D  G LL+  A   E  + GK     + ++  +   +   L   LG D +++ V A 
Sbjct: 226 TVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGMLTQRVQNILQPILGNDRYKAEVSAV 285

Query: 266 LNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           ++    +     ++PD    RS + S + QRS +S
Sbjct: 286 VDFSAVESTAESFNPDQPALRSEQ-SVNEQRSSSS 319


>gi|283784015|ref|YP_003363880.1| lateral flagellar M-ring protein [Citrobacter rodentium ICC168]
 gi|282947469|emb|CBG87016.1| lateral flagellar M-ring protein [Citrobacter rodentium ICC168]
          Length = 554

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 112/402 (27%), Positives = 202/402 (50%), Gaps = 50/402 (12%)

Query: 41  FFVNSPH-YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
              NS H Y +LY + E   V++I   L    +++RI      I VP   + K R+ LAA
Sbjct: 42  LLWNSNHGYVSLYGRQENLPVSQIVTVLDGEKLEYRIDPQSGQILVPEEALSKTRMALAA 101

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
           +G+ +   N GYEL DK    G + F+Q I   R+LEGE+A++I ++  + +ARVH+ + 
Sbjct: 102 KGVQALLPN-GYELMDKDEVLGSSQFVQNIRYKRSLEGELAQSIMTLDAVESARVHLALN 160

Query: 160 DMGSFRKIGARP--TASVMIRAINPSVYKSAE-------AIRHLVAAAVPNLDMGDVTVL 210
           +  SF  +  RP  +ASV++R     ++  A+       AI HLV+ ++P L    V+V+
Sbjct: 161 EESSF-VVSDRPQNSASVVVR-----LHYGAKLDMDQVNAIVHLVSGSIPGLKATQVSVV 214

Query: 211 DSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAEL 266
           D  G LLT    A E       K   I+Q IQ +   ++   L + +G  N+R +V+ +L
Sbjct: 215 DQAGNLLTDGTGAGEAVAATTRKHDQILQDIQDKTRASVANVLDSLVGPGNYRISVMPDL 274

Query: 267 NM-DTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ-------------PESAVTVEQNM 312
           ++ D  + RE  Y  + KV R     ++ Q S+T+Q             P +   V  N 
Sbjct: 275 DLSDIDETREH-YGNEPKVNR----EENVQDSDTNQIAMGIPGSLSNRPPVAPNQVTNNA 329

Query: 313 PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372
              +    P P++L    + +   +Y+ + + I   +  + ++RL +AVV+N+     + 
Sbjct: 330 SATTAESNP-PQALSKHSESKRDYSYDRSVQHI--QYPGFTVKRLKVAVVLNQ-EAPALK 385

Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
             + +Q +      ++  +++ A GI+++RGD ++++ + F+
Sbjct: 386 NWTPEQTR------QLTDLLNNAAGIDTQRGDNLSLSLLRFV 421


>gi|167576644|ref|ZP_02369518.1| flagellar MS-ring protein [Burkholderia thailandensis TXDOH]
          Length = 531

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 136/537 (25%), Positives = 240/537 (44%), Gaps = 74/537 (13%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
           +Y  L+   E   ++ +  AL    I +RI  +   + V  S V +AR+ LAA+G+ ++ 
Sbjct: 34  NYKPLFGAREPVQLDDVVSALDAQRIPYRIHPDTGQVLVARSDVARARMMLAARGV-TAK 92

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
           +  G E  D+ +  G + F+Q++   R LE E+A++I ++  +  ARVH+ +    SF  
Sbjct: 93  AAPGLEQIDQDDPLGTSQFVQDVRFRRGLESELAQSIATLDPVERARVHLSIAKSSSFVM 152

Query: 167 IGARPTASVMIRAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EM 222
           +    +A+ ++  + P    + E   A+ +LVA +VPNL  G V+V+D  G  L+A  ++
Sbjct: 153 MDGDKSAASVVLTLKPGARLAKEQIAAVINLVAGSVPNLAPGKVSVVDQHGAFLSARVDL 212

Query: 223 ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPD 281
           + ++ G    I    + ++  N+   LA  LG  NFR +V A +N D  ++ RE      
Sbjct: 213 DGDLTGND-EIAARFRDDVTRNVEDLLAPSLGPGNFRVSVTAVVNNDRVEETRE------ 265

Query: 282 SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKE------EQ 335
            +   + ++  +A R+E ++   A+ V  ++   S+R V +P S  + D          Q
Sbjct: 266 -QFGEAPKVMSEATRNEQNRDRVALGVPGSL---SNRPVDVPASGPDADSGSRRNATTRQ 321

Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395
             Y+ N   I       +LE+LS+AVV+N   ++   G+     +    L  I+ I+ + 
Sbjct: 322 FAYDRNITQI--KRGRGQLEKLSVAVVLNNA-VSPTKGKPWQPDQ----LRRIDDILRSG 374

Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455
            GI+ +RGD + ++S+DF           +    D L +    +  AL  L G LL   L
Sbjct: 375 LGIDKQRGDQLIVSSLDFAAPAPAEPWWKE---RDTLEQGGWYLTYALAALFGYLL---L 428

Query: 456 GLHALRRLHNIDDAKKG--------------EVGGKSILSPPPISSAVTTGLMPN--DNI 499
               LR L      + G              E G      P P  +    G M    D++
Sbjct: 429 ARPMLRMLQQWMQHRYGAPPAAAPASRLQAPEGGDAQAALPAPDDARPPLGAMLPLLDDV 488

Query: 500 AL---DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
            L   DS  + +  H R+L                    E   ER A+++++W R++
Sbjct: 489 ELPPADSGVEVLIGHLRSLS-------------------EKEPERVAEVVKQWIRND 526


>gi|254458688|ref|ZP_05072112.1| flagellar M-ring protein FliF [Campylobacterales bacterium GD 1]
 gi|207084454|gb|EDZ61742.1| flagellar M-ring protein FliF [Campylobacterales bacterium GD 1]
          Length = 570

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 111/383 (28%), Positives = 201/383 (52%), Gaps = 25/383 (6%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
            Y+ L+  L   D  +I   L +  I +++ DN + I VP  +V K RI +A+ G+P + 
Sbjct: 51  EYEILFNSLSSEDAAKIVDQLEKDGIVYKLEDN-NIIKVPKDIVYKERITIASMGIPKNR 109

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
              G+ELFD    FG TSF Q +  +RALEGE++RTI ++  I +A V + +P    F  
Sbjct: 110 -GVGFELFD-TQEFGATSFDQNVKYLRALEGELSRTINALGPIESASVSLAIPKDTLFIA 167

Query: 167 IGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER 224
               P+ASVM++ +       K    I++LVA+AVP +    V +++S G+ L  +E E 
Sbjct: 168 KQVDPSASVMVQLVEEQRLSPKQIRGIKNLVASAVPKMKASAVMLINSEGETL-GDEDEM 226

Query: 225 NILGKSLSIVQAIQHEIEM----NINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYD 279
             +G+  ++ Q  + + E      I + ++ F+ G +   + V  E +   Q      YD
Sbjct: 227 AQMGELSTVQQKFKTKEEKKRQSKIIQVISPFVGGEEKVVAQVTIEFDFSIQNSTSETYD 286

Query: 280 PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSD-RKVPLPRSLENTDKKEEQSNY 338
           P++ V RS ++S+  ++ E   P     V   + ++   + +   ++ E  +K    +NY
Sbjct: 287 PENVV-RSEQVSE--EKREGGSPAEIGGVPGTVSNIGPVQGLKSNQTNEKYEKNTGTTNY 343

Query: 339 EINTKSIATTHDNY-KLERLSIAVVVN---KGRLTEVLGRSADQGKI----DSYLAEINK 390
           E+  K+++TT   + +++R+S AV+V+   K +L +  G+S D+ +     +S L  +  
Sbjct: 344 EVG-KTVSTTKSQFARIKRISAAVIVDGKYKFKL-DAEGKSTDELEYEPLQESDLDALAS 401

Query: 391 IVSAATGINSRRGDTITITSMDF 413
           +V  + GIN +RGD I++ ++ F
Sbjct: 402 LVGRSIGINDQRGDQISVKNLQF 424


>gi|307546949|ref|YP_003899428.1| flagellar MS-ring protein [Halomonas elongata DSM 2581]
 gi|307218973|emb|CBV44243.1| flagellar MS-ring protein [Halomonas elongata DSM 2581]
          Length = 581

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 114/430 (26%), Positives = 182/430 (42%), Gaps = 70/430 (16%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92
           I +  A   + ++P Y  LY  L  +D   I   L   +I +R S  G ++ VP   V K
Sbjct: 42  IAVVAALMLWASAPQYRVLYSNLSEADGGSIIAELDSRSIPYRFSQGGQALMVPGDQVHK 101

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
            R+ LA QGLP    N G EL +   +FG++ F ++I   R LEGE+AR+++S+  +  A
Sbjct: 102 LRLQLAEQGLPKGG-NVGLELMED-QAFGISQFAEQINYQRGLEGELARSMESLGPVAEA 159

Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVL 210
           RVH+ +     F +      ASV++      V    +  A+ H+V+++VP+L    VTVL
Sbjct: 160 RVHLALAKDSVFVRRREPAKASVVLTLEPGRVLGKGQVNAVAHMVSSSVPDLAAEAVTVL 219

Query: 211 DSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
           D  G+LL+  +     + G  L  V  ++      I   L   LG    R+ V A+L+  
Sbjct: 220 DQNGRLLSRPDGGSLGLDGTQLDYVAEVERAYRQRIEAILTPILGRGKVRAQVTAQLDFS 279

Query: 270 TQQIREIVYDPDSKVERSIRLSKDAQRSETSQP--ESAVTVEQNMPHVS--DRKVPLPRS 325
                              R  + A+R   +QP  E+AV   Q    ++  D    +P +
Sbjct: 280 -------------------RREETAERYTPNQPPNEAAVRSRQTSLDLNGDDLANGVPGA 320

Query: 326 LENTDKKEEQS----------------------------------------NYEINTKSI 345
           L NT     +S                                        NYE++ +  
Sbjct: 321 LSNTPPGFAESPIATAPEDGEDAAADADQETNDTASQASQAQRRLSRDDVINYEVDRQVS 380

Query: 346 ATTHDNYKLERLSIAVVVN--KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403
              H   ++ERLS AVVV+  +    +  G        D  LA++ ++V  A G +  RG
Sbjct: 381 HVEHQRGRIERLSAAVVVDYRQTPAEQPDGEPTAAPLDDDELAQVKRLVQQALGFSEARG 440

Query: 404 DTITITSMDF 413
           D +T+ +  F
Sbjct: 441 DQVTVVNRPF 450


>gi|304414645|ref|ZP_07395721.1| flagellar MS-ring protein [Candidatus Regiella insecticola LSR1]
 gi|304283183|gb|EFL91591.1| flagellar MS-ring protein [Candidatus Regiella insecticola LSR1]
          Length = 532

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 132/547 (24%), Positives = 253/547 (46%), Gaps = 62/547 (11%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            + +S  Y  L+   E     ++   L   +I +R++ +   I V  + +G+AR+ LAA+
Sbjct: 16  LWRSSQSYTVLFGSQEQIPTTQVVEVLGSESIPYRVNPDNGQILVAENQLGRARMALAAK 75

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           G+ +++   GYEL DK    G + FMQ +   R+LEGE+A+++ ++  +  ARV + M +
Sbjct: 76  GI-TAALPVGYELMDKETMLGSSQFMQNVRYKRSLEGELAQSVMALDAVEYARVRLGMSE 134

Query: 161 MGSFRKIGARP--TASVMIRAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGK 215
             SF  I  +P  +ASV++R + P    + E   AI  LV+ +VP +    V V++  G+
Sbjct: 135 ASSF-VITTKPDSSASVILR-LKPRHQLTPEQVGAIIQLVSGSVPGMKASQVRVINQNGE 192

Query: 216 LLTANEMERN----ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ 271
           LL+      N     L     + + +Q  +E N+   L   +G +N+R +V  +L++   
Sbjct: 193 LLSEGYQNSNNGLSTLKSGPELARKLQLAVEKNVANLLNPIVGANNYRISVTTQLDLSNI 252

Query: 272 QIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPHVSDRKVPLPRSLEN 328
           + +   Y  D +      L ++  + E+S  E A+ +     N P   +     P ++ N
Sbjct: 253 EEKLERYGADPRT-----LDENVNQ-ESSSDERAMGIPVTLSNQPAAKN-NAQSPSTMLN 305

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
             + + +  Y+ + + +   H +YKLE++++A+V+NK         SA +      L E+
Sbjct: 306 RSQSQRKFAYDRDIRHV--RHPSYKLEKMTVAIVLNK-------AASALEQWTTPQLDEL 356

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDI---LSRHFATVINALVF 445
            ++   A GIN  RGD++T+  + F         T Q  + +      +  A +  A + 
Sbjct: 357 KRLAIDAAGINFDRGDSLTMNLITF---------TPQTEYEETPLPWWQEPAALRWAQMG 407

Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP------PPISSAVTTGLMP--ND 497
            +G +   FL       +  +   ++ +    S+ SP       P ++A      P  ND
Sbjct: 408 GIGLIAFFFLWFGVRPLIQRV--TREEQTSSTSVASPDQPQNLTPETTAAMGDAAPKIND 465

Query: 498 NIAL-DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW------A 550
              L D   +  F    +L S  +   +K S +++L   E +  R A+++++W       
Sbjct: 466 EKVLADVLPKSSFQEEDDLPSPASGLETKISHMQMLAYSETD--RVAEVIKQWINSNERT 523

Query: 551 RSEIEDR 557
           R+E++ R
Sbjct: 524 RAELDTR 530


>gi|58760481|gb|AAW82147.1| FliF [Stenotrophomonas maltophilia]
          Length = 545

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 112/449 (24%), Positives = 200/449 (44%), Gaps = 15/449 (3%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
           Q+F    SL  TR L L ++I V ++      F+   P    LY  L+       +  L 
Sbjct: 17  QWFDRLQSLQITRRLGLMAMIAVAVVSVF---FWSQKPGMVPLYTGLDQKATAEATDLLR 73

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
            A I F +      I+VP   +  AR+ LA  GL + S   G+EL ++   FG++ F++ 
Sbjct: 74  AAQIPFALDPATGGITVPEKNLHDARLKLAGSGL-TDSGKLGFELMERDPGFGVSQFVES 132

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYK 186
                ALE E++RTI ++  +  +RVH+ +P   +F +     +ASV   +R        
Sbjct: 133 ARYQHALETELSRTINTLRPVRDSRVHLAIPKPSAFTRQRDVASASVTLELRGGQQLERS 192

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN-- 244
             +AI H+VAA++P+L    VTV+D +G++L+  +        +    Q  + E   N  
Sbjct: 193 QVDAIVHMVAASIPDLAPERVTVVDQSGRMLSITDPNSEAAVNAAQFEQVRRQETSFNQR 252

Query: 245 INKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           I + L    G       V  +++   T++ RE+ Y+ + +  RS ++S++   + T  P+
Sbjct: 253 IRELLEPMTGPGRVNPEVSVDMDFSVTEEAREL-YNGEPQKLRSEQMSENT--TSTPGPQ 309

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
                  N P    +  P          K    NYE++     T     +++R+S+AV+V
Sbjct: 310 GVPGATSNSPP-GQQAAPATAQTPTESSKNATRNYELDRTLQHTRQPAGRIKRVSVAVLV 368

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           +        G+ + Q    + L  +  +V  A G N+ RGDT+++ +  F+ +     G 
Sbjct: 369 DNVPRAGANGKMSPQPLSAAELTRVEALVKQAVGFNAERGDTVSVMNAPFVRDTTPVEGP 428

Query: 424 V--QVSFMDILSRHFATVINALVFLVGTL 450
              ++ ++    R     +  L  L G L
Sbjct: 429 AWWELPWVHDAGRMLLGAVVVLALLFGVL 457


>gi|167614819|ref|ZP_02383454.1| flagellar MS-ring protein [Burkholderia thailandensis Bt4]
 gi|257141404|ref|ZP_05589666.1| flagellar MS-ring protein [Burkholderia thailandensis E264]
          Length = 531

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 114/428 (26%), Positives = 207/428 (48%), Gaps = 33/428 (7%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
           +Y  L+   E   ++ +  AL    I +RI  +   + V  S V +AR+ LAA+G+ ++ 
Sbjct: 34  NYKPLFGAREPVQLDDVVSALDAQRIPYRIHPDTGQVLVARSDVARARMMLAARGV-TAK 92

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
           +  G E  D+ +  G + F+Q++   R LE E+A++I ++  +  ARVH+ +    SF  
Sbjct: 93  AAPGLEQIDQDDPLGTSQFVQDVRFRRGLESELAQSIATLDPVERARVHLSIAKSSSFVM 152

Query: 167 IGARPTASVMIRAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EM 222
           +    +A+ ++  + P    + E   A+ +LVA +VPNL  G V+V+D  G  L+A  ++
Sbjct: 153 MDGDKSAASVVLTLKPGARLAKEQIAAVINLVAGSVPNLAPGKVSVVDQHGAFLSARVDL 212

Query: 223 ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPD 281
           + ++ G    I    + ++  N+   LA  LG  NFR +V A +N D  ++ RE      
Sbjct: 213 DGDLTGND-EIAARFRDDVTRNVEDLLAPSLGPGNFRVSVTAVVNNDRVEETRE------ 265

Query: 282 SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKE------EQ 335
            +   + ++  +A R+E ++   A+ V  ++   S+R V +P S  + D          Q
Sbjct: 266 -QFGEAPKVMNEATRNEQNRDRVALGVPGSL---SNRPVDVPASGPDVDGGSRRNATTRQ 321

Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395
             Y+ N   I       +LE+LS+AVV+N   ++   G+     +    L  I+ I+ + 
Sbjct: 322 FAYDRNITQI--KRGRGQLEKLSVAVVLNNA-VSPTKGKPWQPDQ----LRRIDDILRSG 374

Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455
            GI+ +RGD + ++S+DF           +    D L +    +  AL  L G LL+   
Sbjct: 375 LGIDKQRGDQLIVSSLDFAAPAPAEPWWKE---RDTLEQGGWYLTYALAALFGYLLLARP 431

Query: 456 GLHALRRL 463
            L  L++ 
Sbjct: 432 MLRMLQQW 439


>gi|157165014|ref|YP_001466462.1| flagellar MS-ring protein [Campylobacter concisus 13826]
 gi|112801613|gb|EAT98957.1| flagellar M-ring protein FliF [Campylobacter concisus 13826]
          Length = 565

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 120/445 (26%), Positives = 215/445 (48%), Gaps = 25/445 (5%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH---YDNLYVKLEVS 58
           A+L Q+ Q ++   SL + +I+  +S++LV   L     +   S     Y  L+  +  S
Sbjct: 5   ALLHQISQIYQK-LSL-KQKIVAGSSIVLVVAFLVFLTLYKSKSDSFVGYSVLFENISPS 62

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
           D   I   L++  I +++++ G+ I VP+S V K RI +A  G+P  S   G+E+FDK  
Sbjct: 63  DSALIVDQLNKDGIKYKLANEGT-ILVPTSDVYKERIAVATLGIPKESK-IGFEIFDK-Q 119

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178
            FG T   Q +   RALEGE+ARTI+S+S I  A V I +P    F +  A PTAS+++ 
Sbjct: 120 EFGATDAEQRVKFQRALEGELARTIESLSSIQKATVRIAIPKESVFTERQALPTASIVVE 179

Query: 179 AINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLL--TANEMERNILGKSLSI 233
            + P V  +A+    I++LVAA+V NL   +V +++  G  L     E + + + + +  
Sbjct: 180 -LKPGVSLNAKQIFGIKNLVAASVTNLSTENVKIVNQDGVALGDEDGEFDSDAIAQQIRY 238

Query: 234 VQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292
            +  ++  E  I   LA  + G D   + V  + + D +  +  VYDP++ V     +  
Sbjct: 239 KREFENNYEQKIVNVLAPIVGGADKVVAKVNIDFDFDKKDTKSEVYDPNNVVRSESNIE- 297

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSL-ENTDKKEEQSNYEINTKSIATTHDN 351
             ++ + S P     V   + ++   +     +L E  +K  +Q+NYEI+ K        
Sbjct: 298 --EKRQGSAPNEVGGVPGAVSNIGPVQGLDDSTLKEQYNKSSQQTNYEISKKVTNVKGQF 355

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKID------SYLAEINKIVSAATGINSRRGDT 405
             + R+S AVV++    ++        G+++           I  ++  + G N  RGD 
Sbjct: 356 ASINRVSAAVVIDGLYQSKKDKDGKPTGELEFAPLTKEQRESITNLIKQSIGYNQNRGDE 415

Query: 406 ITITSMDFLENQLFNSGTVQVSFMD 430
           +++ + +F   +  ++G     FM+
Sbjct: 416 VSLDNFEFKTGKDVSTGEKMDGFMN 440


>gi|21672359|ref|NP_660426.1| flagellar MS-ring protein [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
 gi|25008478|sp|Q8KA45|FLIF_BUCAP RecName: Full=Flagellar M-ring protein
 gi|21622963|gb|AAM67637.1| flagellar M-ring protein [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
          Length = 556

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 107/438 (24%), Positives = 209/438 (47%), Gaps = 46/438 (10%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           L  FFK+      +R+LI+  + ++ ++  ++   +  SP Y  LY  L   D   I   
Sbjct: 21  LSYFFKN------SRVLII--LFVLAVITTVSISMWRKSPDYQVLYNNLSNEDGEMIIDQ 72

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L++  I +++S++   + VP   V + R+H +    P    + GYE+ DK   FG++ F 
Sbjct: 73  LNQMQIPYKLSEDSGQLLVPKDKVYELRLHFSENNSPHR--DIGYEILDK-ERFGVSQFG 129

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSV 184
           ++I   RALEGE+ARTI+ I+ +  A++HI  P    F +   +P+ SV+  +++     
Sbjct: 130 EQINYQRALEGELARTIEKINVVKNAKIHIAFPKNSLFLEDKKKPSVSVILNLKSNQGLD 189

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK-SLSIVQAIQHEIEM 243
           +    AI HL+++++ +L + ++T++D  GKLL  + +  N +    L   + ++     
Sbjct: 190 HSQVNAILHLISSSICDLSIENITIIDQFGKLLNNSSLGLNQIDDLKLRYSEEVESRYRN 249

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD------------SKVERSIRLS 291
            I   L   LG +N  + V A++N ++ +  +  Y P+            S V   I   
Sbjct: 250 RIKNILEPLLGFNNVYAQVTAQINFNSHEKTQEKYTPNTNYKNQAIRSRQSTVNDKINNR 309

Query: 292 KDAQRSETSQPESAVTVEQ--NMPHVSDRKVPLPRSLENTDKK----------EEQSNYE 339
           K+  + +   P+++ +  +  N    S++K+       N D            ++  NYE
Sbjct: 310 KEENKPDELFPQTSFSSNKDLNSTTYSNKKIKKSIIQNNQDNNILHSNSAISHDDTINYE 369

Query: 340 INTKSIATTHDNYKLERLSIAVVVN--KGRLTEVLGRSADQGKIDSYLAEINKIVSAATG 397
           +N     T  +  +++RLS AV+VN  K +  + +  + +Q      + +I  +V  A G
Sbjct: 370 LNHSLSHTKMNIGEIKRLSAAVIVNFVKDKNGKSVPINVEQ------IKKIKNLVREAIG 423

Query: 398 INSRRGDTITITSMDFLE 415
            +  RGD++ + +  F +
Sbjct: 424 YSKVRGDSVYVVNESFFQ 441


>gi|83718135|ref|YP_438373.1| flagellar MS-ring protein [Burkholderia thailandensis E264]
 gi|83651960|gb|ABC36024.1| flagellar M-ring protein FliF [Burkholderia thailandensis E264]
          Length = 551

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 114/428 (26%), Positives = 207/428 (48%), Gaps = 33/428 (7%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
           +Y  L+   E   ++ +  AL    I +RI  +   + V  S V +AR+ LAA+G+ ++ 
Sbjct: 54  NYKPLFGAREPVQLDDVVSALDAQRIPYRIHPDTGQVLVARSDVARARMMLAARGV-TAK 112

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
           +  G E  D+ +  G + F+Q++   R LE E+A++I ++  +  ARVH+ +    SF  
Sbjct: 113 AAPGLEQIDQDDPLGTSQFVQDVRFRRGLESELAQSIATLDPVERARVHLSIAKSSSFVM 172

Query: 167 IGARPTASVMIRAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EM 222
           +    +A+ ++  + P    + E   A+ +LVA +VPNL  G V+V+D  G  L+A  ++
Sbjct: 173 MDGDKSAASVVLTLKPGARLAKEQIAAVINLVAGSVPNLAPGKVSVVDQHGAFLSARVDL 232

Query: 223 ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPD 281
           + ++ G    I    + ++  N+   LA  LG  NFR +V A +N D  ++ RE      
Sbjct: 233 DGDLTGND-EIAARFRDDVTRNVEDLLAPSLGPGNFRVSVTAVVNNDRVEETRE------ 285

Query: 282 SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKE------EQ 335
            +   + ++  +A R+E ++   A+ V  ++   S+R V +P S  + D          Q
Sbjct: 286 -QFGEAPKVMNEATRNEQNRDRVALGVPGSL---SNRPVDVPASGPDVDGGSRRNATTRQ 341

Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395
             Y+ N   I       +LE+LS+AVV+N   ++   G+     +    L  I+ I+ + 
Sbjct: 342 FAYDRNITQI--KRGRGQLEKLSVAVVLNNA-VSPTKGKPWQPDQ----LRRIDDILRSG 394

Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455
            GI+ +RGD + ++S+DF           +    D L +    +  AL  L G LL+   
Sbjct: 395 LGIDKQRGDQLIVSSLDFAAPAPAEPWWKE---RDTLEQGGWYLTYALAALFGYLLLARP 451

Query: 456 GLHALRRL 463
            L  L++ 
Sbjct: 452 MLRMLQQW 459


>gi|114566385|ref|YP_753539.1| flagellar M-ring protein FliF [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337320|gb|ABI68168.1| flagellar M-ring protein FliF [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 540

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 108/388 (27%), Positives = 196/388 (50%), Gaps = 35/388 (9%)

Query: 48  YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           Y+ LY +L+  D ++I+  L E  + +++ + G++I VP  +  K R+ LA++ LP   +
Sbjct: 54  YEVLYTELDKKDASQITAKLDEGKVPYKLENGGTTILVPPDLKDKTRLTLASENLPRGET 113

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
             G+ELF + + FG T   +++    AL+GE+AR+IQS+  + AA+V++ +P+   F   
Sbjct: 114 --GFELFQE-SKFGETQVDKKVKYQVALQGELARSIQSLDKVKAAKVNLALPESTLFSDN 170

Query: 168 GARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-E 221
              P ASV++       ++P   K  + I +LVA +V  L   +V ++D  G L++ N  
Sbjct: 171 EELPKASVVVNTREEEKLSP---KEIQGIINLVANSVDKLTTENVVIVDQHGNLVSENLP 227

Query: 222 MERNILGKSLSIVQAIQHEIEMNINKALAAF----LGVDNFRSAVVAELNMDTQQIREIV 277
           M    + +++    A++ + E     A+ +     LG +N    V AEL+ D ++ ++ +
Sbjct: 228 MANGDISETVKWQMAMKRQYEKEKQDAIQSMLDKSLGQNNSVVRVNAELDFDNKEQKDEL 287

Query: 278 YDPD--SKVERSIRLSKDAQRSETSQPESAVT-VEQNMPHVSDRKVPLPRSLENTDKKEE 334
           Y  D      RS  + K++  ++T+QP   V   + N+P    ++V     +   DK  +
Sbjct: 288 YSHDDAGPFVRSEEIKKESG-TDTTQPVVGVPGTDTNIPQY--QEVDAAGGVSTYDKSSK 344

Query: 335 QSNYEINT--KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV 392
             NYEIN   K       + K + L++AV+VN  + TE L     +   +  +A I  IV
Sbjct: 345 IRNYEINKTEKVTKVAQGDVKYDYLTVAVLVN-SKATEPLKLGETE---EEKIATIRNIV 400

Query: 393 SAATGINSRRG-------DTITITSMDF 413
           + A G+   R        D I++  +DF
Sbjct: 401 ATACGLRENRKDESVRLEDNISVAFVDF 428


>gi|187935660|ref|YP_001885041.1| flagellar MS-ring protein [Clostridium botulinum B str. Eklund 17B]
 gi|187723813|gb|ACD25034.1| flagellar M-ring protein FliF [Clostridium botulinum B str. Eklund
           17B]
          Length = 520

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 117/417 (28%), Positives = 199/417 (47%), Gaps = 36/417 (8%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           L + FK  T   + +I I  S + V I+   +   + +S  Y  L+  L+  D   I   
Sbjct: 11  LWEKFK--TQSKKIKIAIFVSCVAV-IIAIASTAIYTSSNKYQVLFSNLDPKDAQTILAK 67

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L+E  +  +I   G +I VP+  V + R+ LA + L S SS  GYEL D  +SFG+T   
Sbjct: 68  LNEQKVTTKIQ--GDTILVPNDKVDQLRLELAPE-LKSGSS--GYELMDSGSSFGMTDEE 122

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS--V 184
            ++ ++R  EGE+ +TI+S S I +ARVHI       F K      A+V +     S   
Sbjct: 123 FKVKKLRMQEGELEKTIKSFSQIESARVHITPSTDSVFVKESTPGKAAVYLELKTGSEIT 182

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-------EMERNILGKSLSIVQAI 237
               ++I  LV+ +  N+   ++ V+D    LLTAN        M    L K  S+ +  
Sbjct: 183 KDQVKSIVALVSGSTENVPKENIEVIDDKMNLLTANLNDDENEMMSSESLDKQYSLEKNY 242

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           + +++  I   L   +G D  ++ V  +L+ D++Q  + V DP+ KV  S +  K+   +
Sbjct: 243 ESKLQKEIVSLLEPVIGKDKVKATVNVDLDFDSKQQTQTVLDPN-KVVVSQQTIKEVNNT 301

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
           + +   S   V+ N+ + +D       +  N+ ++E+++NYEI            +++R+
Sbjct: 302 DANGNISESPVDNNISNTTD---DTNNTKSNSSREEQKNNYEIGKTETKVISAPGEVKRM 358

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAE-INKIVSAATGINSRRGDTITITSMDF 413
           + +VVV+              G +D+   + I   VS A G NS RGD I++  M+F
Sbjct: 359 TASVVVD--------------GNLDAATQQAIENAVSNAIGFNSVRGDQISVLGMNF 401


>gi|226225737|ref|YP_002759843.1| flagellar M-ring protein [Gemmatimonas aurantiaca T-27]
 gi|226088928|dbj|BAH37373.1| flagellar M-ring protein [Gemmatimonas aurantiaca T-27]
          Length = 540

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/274 (31%), Positives = 149/274 (54%), Gaps = 15/274 (5%)

Query: 18  GRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS 77
           G  + +I+A  ++V  ++F  +R+    P    LY  + V  V  ++  L+EA I + + 
Sbjct: 14  GARQAMIIAVGVVVTALVFGVSRW-ATKPTMVPLYADVPVEQVKAMTDKLTEAGITYELD 72

Query: 78  DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137
             GS+I V S+ + +AR+ LAA  +P +S   G ELFDK  ++G+T F Q++   RALEG
Sbjct: 73  RTGSTIMVQSADLARARVDLAAGTVP-NSGRPGLELFDK-PTWGMTDFTQKVNYRRALEG 130

Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIR---HL 194
           E+ RTI  +  + + +VH+ + D   F++   RP+ + +  A+N S+   AEA+R    L
Sbjct: 131 ELERTISKMKDVKSVKVHLAIEDDQLFKQ-NERPSKASVTLAMNNSIAPRAEAVRGIASL 189

Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERN-----ILGKSLSIVQAIQHEIEMNINKAL 249
           VA++V  L+   VT++D  G+ LT   ME +     +  + LS+ +  +  +E   +K L
Sbjct: 190 VASSVGGLEPEHVTIVDERGEALT---MEDDGSMAGLTSRQLSVQREAESYLEQKADKLL 246

Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK 283
           ++ +G  N R  V A +N D  +      DPD +
Sbjct: 247 SSLVGSGNARVQVSASMNFDKVERTVQAVDPDRQ 280


>gi|283853241|ref|ZP_06370492.1| flagellar M-ring protein FliF [Desulfovibrio sp. FW1012B]
 gi|283571346|gb|EFC19355.1| flagellar M-ring protein FliF [Desulfovibrio sp. FW1012B]
          Length = 546

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 110/433 (25%), Positives = 203/433 (46%), Gaps = 38/433 (8%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
            ++L+Q++ + ++  R  +  LA  + +  ++ +   + +N      LY  +   D +R+
Sbjct: 9   FEKLIQYWSNRSAAQRILLGGLAGSMAIAFLVMV---YLLNQAEMRVLYTNMAPEDASRV 65

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L  +   + + +NG+++ VP+  V + R+ +A +G+       G+ELFD++   G T
Sbjct: 66  VELLKASKTPYELRENGTTVLVPAEAVYEQRLKVAGEGV-MHGQGVGFELFDQLK-VGQT 123

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAIN 181
            F+Q I   RAL+GE++RTI     +  ARVH+V+P    F +   + +ASV+  ++   
Sbjct: 124 DFVQRINYSRALQGELSRTITEFPQVEKARVHLVLPQKSLFIEEQKKASASVVLTLKRGQ 183

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ---AIQ 238
               K  + I +LVA +V  L    +T+ D+TG+ L     +  + G S +  +     +
Sbjct: 184 KLDAKQLQGIVNLVAMSVEGLTPEHITITDTTGQSLYQPRADGGLDGLSTTQFEFKNTFE 243

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
             +E  I + L   +G     +    +L+   + +R+ +YDP+  V RS + S+++    
Sbjct: 244 ANLENRIEQLLTPIVGPGRALAKANVDLDFSQRTVRKELYDPNVTVVRSEQKSEESTSGS 303

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPR-------SLENTDKKEEQ---SNYEINTKSIATT 348
            +      T     P      VP            E+T K   Q   +NYEIN +     
Sbjct: 304 AAVDAGGATT---TPRGGGAAVPNSNFRGDGYSGTESTQKSSRQNSTTNYEINKEEQNVV 360

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLG--------RSADQGKIDSYLAEINKIVSAATGINS 400
                L+R SIAV+V+ G   +V G        R A++      L  I ++V+ A G++ 
Sbjct: 361 TPVGDLKRQSIAVIVD-GTYEKVEGKNTFTFVPRKAEE------LERIKQVVARAAGLDP 413

Query: 401 RRGDTITITSMDF 413
            RGD I ++S +F
Sbjct: 414 ARGDEIQVSSFEF 426


>gi|330862343|emb|CBX72503.1| hypothetical protein YEW_GP28340 [Yersinia enterocolitica W22703]
          Length = 519

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 134/556 (24%), Positives = 251/556 (45%), Gaps = 72/556 (12%)

Query: 17  LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76
           +G   IL+  ++I            + +S  Y  L+   E   V ++   L    I +RI
Sbjct: 1   MGAAAILVTGAIIF---------SLWRSSQGYTALFGSQEHIPVTQVVEVLDGEAIAYRI 51

Query: 77  SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136
           + +   I V  + +G+A I LAA+G+ +++  +GYEL D+    G + F+Q +   R+LE
Sbjct: 52  NPDNGQILVAENQLGRACILLAAKGI-TATLPTGYELMDQETMLGSSQFIQNVRYKRSLE 110

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR--PTASVMIRAINPSVYKSAE--AIR 192
           GE+A++I +++ +  ARVH+ M +  SF  I  R   +ASV++R       K+ +  AI 
Sbjct: 111 GELAQSIMALTSVDYARVHLGMSEASSF-AISNRSESSASVILRLKYGQTLKADQVGAIV 169

Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINKA 248
            LVA ++P +   +V V+D  G+LL+    AN      +     +   +Q   E +I   
Sbjct: 170 QLVAGSIPGMKAANVRVVDQHGELLSEAYQANGKGMTNVKNGAELAHYLQSTTEKSIANL 229

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI-------RLSKDAQRSETSQ 301
           L++ +G +N+R +V  +L++             S+VE ++       R+S +  + E   
Sbjct: 230 LSSVVGANNYRISVATQLDL-------------SRVEETLERYGAEPRVSDENIQQENGN 276

Query: 302 PESAVTVE---QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
            + A+ +     N P    +    P ++    + + Q  Y  +       H  +KLE+++
Sbjct: 277 EDMAMGIPGSLSNQPAAQPKNANAPAAM---SRSQAQRKYAYDRDIRHVRHPGFKLEKMT 333

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           +AV++NK          A +      L E+ +++  A GI+++RGD++T+  + F    L
Sbjct: 334 VAVILNK-------SAPALEKWTPEQLNELKRLIEDAAGIDAKRGDSLTLNMLAFTVPTL 386

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD-----AKKGE 473
            +   +   + D  +  +  +    +  +  LL     L A  RL   DD     A    
Sbjct: 387 IDEPVI-AWWQDATTFRWVEIAGIGLLSLLFLLFGVRPLMA--RLSRRDDKHSALAMAEN 443

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
           + G ++ +    SSA T  ++P  +          F    NL  + +    K S L+ L 
Sbjct: 444 IDGLNVTNTTSESSATTEPMLPGSS----------FKEDDNLPPQGSGLEIKISHLQQLA 493

Query: 534 MIEINEERFAKILRKW 549
             E   ER A+++++W
Sbjct: 494 QSET--ERVAEVIKQW 507


>gi|239815256|ref|YP_002944166.1| flagellar M-ring protein FliF [Variovorax paradoxus S110]
 gi|239801833|gb|ACS18900.1| flagellar M-ring protein FliF [Variovorax paradoxus S110]
          Length = 502

 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 110/411 (26%), Positives = 193/411 (46%), Gaps = 37/411 (9%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           + F++  T   R RI ++  V+ + ++   AA ++V    Y  L+  L+  D   ++  L
Sbjct: 1   MNFWQGLTQ--RARIGLVGGVLAI-VLAMSAAAWWVFHTEYQVLFADLKPQDAQAMTTEL 57

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
               I +R+ D+G+SI V  + V   RI L  + LP   +  G ELF+  + FG+T F Q
Sbjct: 58  DRLKIPYRLGDSGTSILVDKATVHATRIKLMGKELPLQGT-VGLELFNNTD-FGMTEFAQ 115

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187
           +I   RAL+GE+ RTIQS++ +   RV + +P+ G F++  ++  AS+ +        ++
Sbjct: 116 KINYQRALQGELTRTIQSLAQVREVRVLLALPEQGLFKQATSKAKASITLTLRQGQTLRA 175

Query: 188 AE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNI 245
            +   ++ LVAAAVP +   DVT++DS G  LT  E     L  S + +  ++ + E  +
Sbjct: 176 EQVTGVQRLVAAAVPGMATQDVTIVDSHGVALTRAEGSSGELETSSARLD-LKRDTEAYL 234

Query: 246 NKALAAFL----GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS-IRLSKDAQRSETS 300
           ++ +AA L    G     ++V   LNMD  QIR    D      RS ++ +    R   +
Sbjct: 235 SRKVAAVLDRSFGAGQALASVDVMLNMD--QIRTTTEDVLPAATRSGLQSTGVVVRERET 292

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
             ++   ++     V       PRS       +    Y +  +          + R+ + 
Sbjct: 293 LRDAGAALDARASDVGG-----PRS----GSAQRDVEYAVGRRVEQVVSQQGSIRRIQVV 343

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
            VV K         + D  + D    ++ K+++AA G +  RGDTI + S+
Sbjct: 344 AVVRK---------TLDAAQED----QLRKVIAAAAGASIERGDTIVVQSL 381


>gi|171321207|ref|ZP_02910177.1| flagellar M-ring protein FliF [Burkholderia ambifaria MEX-5]
 gi|171093517|gb|EDT38687.1| flagellar M-ring protein FliF [Burkholderia ambifaria MEX-5]
          Length = 495

 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 114/418 (27%), Positives = 190/418 (45%), Gaps = 52/418 (12%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           + +L  +F +G+   R R   LA  +   +     A +    P Y  L   L+  D   +
Sbjct: 5   ISRLGAYFLAGS---RARQFALAGTLTAVVGCAGLAAWLALRPSYQILARDLKPQDAAAV 61

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  L +  I FR  ++ ++I VP++    AR+ L +  L      +G+ELF++ + FGLT
Sbjct: 62  AAQLDKEKIPFRYDESTAAILVPANDARAARVRLTSADL-RLQGVAGFELFNQ-SDFGLT 119

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----R 178
            F Q++   RAL+GE+ARTI ++  I  ARVH+ +P+   FR+   RP ASV +      
Sbjct: 120 EFAQKVNYQRALQGELARTIATLDAIELARVHLSLPEASLFRRDRGRPKASVALFVRDGH 179

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQ 238
           A+ P V K    I+ LVAAAVP +   DV+VL+ +G   +A+    ++     ++  A++
Sbjct: 180 ALEPDVVKG---IQRLVAAAVPEMSAADVSVLNQSGA--SADARGADVDDPKFALKNAVE 234

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
              E  I   +A   G    R+ V  + ++D  QIR           R   L++ A  + 
Sbjct: 235 QRYEHKILAQIAPIAGAG--RATVSVDASLDFDQIR---------TTRESGLTQSA--AN 281

Query: 299 TSQPESAVT--VEQNMPHVSDRKVPLPRS--LENTDKKEEQSNYEINTKSIATTHDNYKL 354
              P  A T       P+     +P  R+  +E    + E+S  +I             +
Sbjct: 282 PGNPPGAPTHSATAGWPNAGLPPLPGARTAPIEPETARSERSVEQI-------VRSPGAI 334

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
            +LS+ +V++     E   R             +  IVSA+ G +  RGDT+ I + D
Sbjct: 335 RKLSVGIVLDDTMTPERATR-------------LRDIVSASIGFDPARGDTLAIYTPD 379


>gi|312879583|ref|ZP_07739383.1| flagellar M-ring protein FliF [Aminomonas paucivorans DSM 12260]
 gi|310782874|gb|EFQ23272.1| flagellar M-ring protein FliF [Aminomonas paucivorans DSM 12260]
          Length = 524

 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 117/404 (28%), Positives = 181/404 (44%), Gaps = 50/404 (12%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +   P Y+ L+  LEV D   I   L E  I FR     ++I +P   V + R+ LA QG
Sbjct: 43  WAGRPAYEPLFSGLEVEDQASIVAYLKEQKIPFRNDPAANAILLPREKVYETRLALAQQG 102

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP      G+ELFD+    G++ F Q++   RALEGE+ARTI  I  +  ARV+IV+P+ 
Sbjct: 103 LPKGGV-VGFELFDQ-PKMGMSDFQQKVAYSRALEGELARTIGQIEAVKFARVNIVIPEQ 160

Query: 162 GSFRKIGARPTASVMIRAINPSV--YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +     TASV++R         +  + I HLVA +V  L+  DVTV+D+ GK+L+ 
Sbjct: 161 RLFLEQQQPSTASVLVRLKEGQEIGQEQVKGIVHLVARSVEGLNPEDVTVVDTAGKVLSD 220

Query: 220 NEMERNIL------GKSLSIVQ-----AIQHEIEMNINKALAAFLGVDNFRSAVVAELNM 268
              + +++      G+++S VQ       + E+E  +   L    G       V  +L+ 
Sbjct: 221 LIQDDSLIYMSGSDGRAVSSVQRELERQQEQELERKVRLMLEKVFGPGKAVVRVRVDLDF 280

Query: 269 DTQQI--REIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSL 326
           D +    +E +  P+          K   RS+ +  ES V               +P  +
Sbjct: 281 DKKSTSRKEFIPGPN---------GKGVVRSQQNTEESYVGPGMPPGGAPGTTTNIPGYV 331

Query: 327 ENT--------DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ 378
            NT        ++ +  +N++I T+          + RLS +V+V+       L     Q
Sbjct: 332 VNTGTGGNVEYNRTDTVTNFDITTQESQQVATPGAIRRLSASVLVDG-----TLNAQQTQ 386

Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDF---LENQLF 419
              DS        V+AA G N  RGD + I  M F   L +QL 
Sbjct: 387 SLKDS--------VAAAIGFNQLRGDQLVIQGMKFDTTLADQLL 422


>gi|332558480|ref|ZP_08412802.1| FliF [Rhodobacter sphaeroides WS8N]
 gi|2494549|sp|Q53151|FLIF_RHOSH RecName: Full=Flagellar M-ring protein
 gi|1419203|emb|CAA67251.1| FliF protein [Rhodobacter sphaeroides]
 gi|332276192|gb|EGJ21507.1| FliF [Rhodobacter sphaeroides WS8N]
          Length = 570

 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 120/441 (27%), Positives = 201/441 (45%), Gaps = 48/441 (10%)

Query: 3   ILDQLLQFF-KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           +LDQ+ +F  + G       ILILA  +L      +A    +  P    LY  L  ++  
Sbjct: 24  MLDQIRRFGDQPGLRRAMPAILILAVTVLA-----LAGWILLREPARVTLYPGLPEAEKA 78

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           R+  +L+   I   I +    ++VP +   +AR+ LAAQGLP    +    L D     G
Sbjct: 79  RVIDSLTGGGIAAVIDERTGEVAVPGAEYHRARMLLAAQGLPQGLPDGNALLSDL--PMG 136

Query: 122 LTSFMQEITRVR-ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
            TS   E  R+R A E ++AR+I  IS + AARVH+ +P+  +F +    P ASV ++ +
Sbjct: 137 -TSKSVETARLRQAQELDLARSITEISAVSAARVHLALPERSAFLRESQPPRASVFLQIV 195

Query: 181 NPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQ 238
                  A  EAI +LV+++VP +   DVTV+D  G+LL+    +  +L       + +Q
Sbjct: 196 PGRTLDGAQVEAIVNLVSSSVPGMARQDVTVVDQMGRLLSRGSDDPAVLLND----RQLQ 251

Query: 239 HEIEMN------INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292
           H +++       I   L    G  N    V  +++   Q+IRE   DPD    R+  L++
Sbjct: 252 HRVQLETLYRNRIESLLTPIAGPGNLAVQVTIDMDFTRQEIREEQVDPD----RTALLAE 307

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE---------------NTDKKEEQSN 337
            +Q  ET+ P++     + +P       P   +LE                +  +    N
Sbjct: 308 QSQIEETADPQA-----RGIPGAVSNSPPPEAALEAGAPPTAAGEAAAPMRSRSQNSTRN 362

Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL--AEINKIVSAA 395
           +E++ K   T     ++ R+S AVVV           +A    +      A++ ++  +A
Sbjct: 363 FEVSRKVETTLPATARIARVSAAVVVRAQPQPAATDPAAPPPPLLPEALKADLERLTRSA 422

Query: 396 TGINSRRGDTITITSMDFLEN 416
            G ++ RGD +TIT+  FL+ 
Sbjct: 423 VGFDADRGDVVTITAQPFLDT 443


>gi|315452715|ref|YP_004072985.1| Flagellar basal-body M-ring protein FliF [Helicobacter felis ATCC
           49179]
 gi|315131767|emb|CBY82395.1| Flagellar basal-body M-ring protein (FliF) [Helicobacter felis ATCC
           49179]
          Length = 567

 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 117/428 (27%), Positives = 207/428 (48%), Gaps = 34/428 (7%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
           +Y  L+  ++ SD   +   L +  I ++I  +  +I +P   + + RI LA+QG+P +S
Sbjct: 52  NYGVLFEGMDNSDNALVLQYLQQKQIPYKIPKD-DTILIPKDKIYEERIALASQGIPKTS 110

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
              GYE+FD    FG T F Q I  +RA+EGE++RTI+S++ I  A VHI +P    F  
Sbjct: 111 K-VGYEIFD-TKDFGATDFDQNIKYIRAIEGELSRTIESLTPIDKASVHIAIPKDSVFVS 168

Query: 167 IGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--- 220
               PTASVM++ I P++    K    I++L+AA+VP L + +V +++  G+ L  +   
Sbjct: 169 REIPPTASVMLK-IKPNMRLLPKQILGIKNLIAASVPKLTVENVKLVNENGEPLGEDDEL 227

Query: 221 EMERNILGKSLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYD 279
           +  + +    L   Q  ++ +E  I+  LA  + G D   + V AE +   ++  +  +D
Sbjct: 228 DTTKELAQAQLHYKQNFENLLESKISNILAPIVGGRDKVVAKVSAEFDFSQKKSTKETFD 287

Query: 280 PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYE 339
           P++ V     + +  +     Q      V  N+  V  + V   +  E  +K    +NYE
Sbjct: 288 PNNVVRSEQSMEEKREGYPKKQVGGVPGVVSNIGPV--QGVANDQLKEKYEKSTNTTNYE 345

Query: 340 INTKSIATTHDNYK-LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE----INKIVSA 394
           +  K+++     +  L RL+ AVVV+ GR  +V     +  +     AE    IN +V  
Sbjct: 346 VG-KTVSEIKGEFGVLTRLNAAVVVD-GRYKKVDKNGTETIEYVPLSAEEMDKINALVKQ 403

Query: 395 ATGINSRRGDTITITSMDFLENQLFNSGTVQV-------SFMDILSRHFATVINALVFL- 446
           A G +  RGD + +++ +      FN+ T +         F++   R+     +   +L 
Sbjct: 404 AIGYSQSRGDAVAVSNFE------FNAKTAKYVPISAYEKFVNTTERYLGPFSSLFKYLI 457

Query: 447 VGTLLVTF 454
           +G +L  F
Sbjct: 458 IGLILYVF 465


>gi|221639466|ref|YP_002525728.1| Flagellar M-ring protein [Rhodobacter sphaeroides KD131]
 gi|221160247|gb|ACM01227.1| Flagellar M-ring protein [Rhodobacter sphaeroides KD131]
          Length = 561

 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 120/442 (27%), Positives = 201/442 (45%), Gaps = 48/442 (10%)

Query: 2   AILDQLLQFF-KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
            +LDQ+ +F  + G       ILILA  +L      +A    +  P    LY  L  ++ 
Sbjct: 14  GMLDQIRRFGDQPGLRRAMPAILILAVTVLA-----LAGWILLREPARVTLYPGLPEAEK 68

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            R+  +L+   I   I +    ++VP +   +AR+ LAAQGLP    +    L D     
Sbjct: 69  ARVIDSLTGGGIAAVIDERTGEVAVPGADYHRARMLLAAQGLPQGLPDGNALLSDL--PM 126

Query: 121 GLTSFMQEITRVR-ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           G TS   E  R+R A E ++AR+I  IS + AARVH+ +P+  +F +    P ASV ++ 
Sbjct: 127 G-TSKSVETARLRQAQELDLARSITEISAVSAARVHLALPERSAFLRESQPPRASVFLQI 185

Query: 180 INPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI 237
           +       A  EAI +LV+++VP +   DVTV+D  G+LL+    +  +L       + +
Sbjct: 186 VPGRTLDGAQVEAIVNLVSSSVPGMARQDVTVVDQMGRLLSRGSDDPAVLLND----RQL 241

Query: 238 QHEIEMN------INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
           QH +++       I   L    G  N    V  +++   Q+IRE   DPD    R+  L+
Sbjct: 242 QHRVQLETLYRNRIESLLTPIAGPGNLAVQVTIDMDFTRQEIREEQVDPD----RTALLA 297

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE---------------NTDKKEEQS 336
           + +Q  ET+ P++     + +P       P   +LE                +  +    
Sbjct: 298 EQSQIEETADPQA-----RGIPGAVSNSPPPEAALEAGAPPTAAGEAAAPMRSRSQNSTR 352

Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL--AEINKIVSA 394
           N+E++ K   T     ++ R+S AVVV           +A    +      A++ ++  +
Sbjct: 353 NFEVSRKVETTLPATARIARVSAAVVVRAQPQPAATDPAAPPPPLLPEALKADLERLTRS 412

Query: 395 ATGINSRRGDTITITSMDFLEN 416
           A G ++ RGD +TIT+  FL+ 
Sbjct: 413 AVGFDADRGDVVTITAQPFLDT 434


>gi|167041778|gb|ABZ06520.1| putative Secretory protein of YscJ/FliF family protein [uncultured
           marine microorganism HF4000_093M11]
          Length = 461

 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 120/422 (28%), Positives = 198/422 (46%), Gaps = 21/422 (4%)

Query: 5   DQLLQF--FKSGTSLGRTRILILASVILVPIMLFMAARFFV-NSPHYDNLYVKLEVSDVN 61
           D  LQF  F    SL + RI ILA++ +  I++ M +  FV N   +  L+  +E  D  
Sbjct: 10  DVRLQFQDFFGALSLPK-RITILAALGI--ILIGMVSMIFVANRSSWAPLFSNVEPGDAA 66

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L E  I + ++  G +I V    V  AR+ LA + +   S     +LF    S G
Sbjct: 67  AIVEKLQENQIPYMLAPGGRTIMVEPHRVDHARLTLAKEKVLPGSGVGFLDLF-ATPSLG 125

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
            T F Q +    A EGE+AR I +I+ + +A+V + +P    F      PTA++ +   +
Sbjct: 126 ETEFQQGVKFRVAQEGELARLISTINVVKSAKVSLAIPQKTLFSDNQVEPTAAIALNLTS 185

Query: 182 PSV-YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK---SLSIVQAI 237
                K  E I HLVA+AV  L   +V + D TG LL+    + +  GK   + S    +
Sbjct: 186 SGASRKQIETIVHLVASAVEGLSPRNVKITDQTGTLLSRGISDDSAGGKMNDNYSYKSRL 245

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           + E+E  + + +   +G D  R  V A L  D + I+E + DPD     S ++  ++   
Sbjct: 246 EKELEAKVVRQIEEVVGKDRVRVNVSATLRFDRRTIKEQLIDPDQTSVVSEQIVDESSTG 305

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
             S P     V  N+P  + R+     ++    KK    N+E + + I       ++ RL
Sbjct: 306 TRSIPVGPAGVTTNLPEATGREAA---TVSEFSKKNSTRNFESSRREIILESAVGEVVRL 362

Query: 358 SIAVVVNKGRLTEVLGRSADQ-GKIDSYLAEINK-----IVSAATGINSRRGDTITITSM 411
           S++V+++  R +++L  S +  G+ ++   E  K     +V AA G N  RGD + + +M
Sbjct: 363 SVSVLLDN-RRSQILDESGNSLGRTNTPWTEGEKETIIGLVKAAMGYNEERGDRVFVGNM 421

Query: 412 DF 413
            F
Sbjct: 422 PF 423


>gi|260893875|ref|YP_003239972.1| flagellar M-ring protein FliF [Ammonifex degensii KC4]
 gi|260866016|gb|ACX53122.1| flagellar M-ring protein FliF [Ammonifex degensii KC4]
          Length = 498

 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 109/396 (27%), Positives = 179/396 (45%), Gaps = 45/396 (11%)

Query: 24  ILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSI 83
           ++A  + +P+ L           +Y  L+  L   D   +   L E  + +R++D G++I
Sbjct: 34  LIACCVFLPLYLAQL--------NYAPLFKGLRPEDAGAVVQKLEEMKVPYRMTDGGTTI 85

Query: 84  SVPSSMVGKARIHLAAQG-LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
            VP   V K R  LAA+G LP +    G+ELFDK    G+T F +++   RAL+ E+ RT
Sbjct: 86  LVPKDQVYKVRAELAAKGALPGA--GKGFELFDKTR-LGITDFEEQVNYQRALQEELRRT 142

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVP 200
           I    G+  ARVH+V+P    F     +P+ASV+  ++ +     +  E I  LV+ AV 
Sbjct: 143 ILQFDGVEDARVHLVLPPRSPFVTEQPKPSASVVLKLKPLEKLKPEQVEGIVALVSGAVQ 202

Query: 201 NLDMGDVTVLDSTGKLLTANEM--ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNF 258
            L   DV V+D+ G++LT      E   +     +V A + E+E  +   L   LG    
Sbjct: 203 GLKPEDVRVIDTRGEVLTPPTQGGEVGAVRNQQELVLAFERELERRVKNLLDQILGPG-- 260

Query: 259 RSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDR 318
           ++AV+   + D  +   +   P  +V  S     +   +E    ++A  V    P     
Sbjct: 261 KAAVMVNADFDFSRREVVTVLPQGQVPVS-----EHTLTEQGAAQAAAGVAPTYPAGGA- 314

Query: 319 KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ 378
                   +N  K+E   NY++  +         +L RL+ +VVV+              
Sbjct: 315 ------GGQNYSKQETTRNYQVGEQREKVIEVPGRLRRLTASVVVD-------------- 354

Query: 379 GKIDSY-LAEINKIVSAATGINSRRGDTITITSMDF 413
           G +D   + +I  +V+ A G N +RGD IT+ S  F
Sbjct: 355 GNLDPVTMQKIQNLVAGALGYNPQRGDQITVDSFTF 390


>gi|332531123|ref|ZP_08407037.1| flagellar M-ring protein FliF [Hylemonella gracilis ATCC 19624]
 gi|332039408|gb|EGI75820.1| flagellar M-ring protein FliF [Hylemonella gracilis ATCC 19624]
          Length = 570

 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 111/454 (24%), Positives = 197/454 (43%), Gaps = 52/454 (11%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110
           L+  L   D   I   L++  + ++ ++ G +I VP+  V   R+ LA+QGLP  S  +G
Sbjct: 50  LFSGLSDKDGGAIIAQLTQMQVPYQYTEGGGAILVPADKVHDTRLRLASQGLPKGSV-TG 108

Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170
           +EL +  + FG T F + +   R LEGE+ R+IQ++S + +ARVH+ +P    F +   +
Sbjct: 109 FELMEN-SRFGATQFQERVNFQRGLEGELTRSIQALSSVQSARVHLALPQQNGFFREQQK 167

Query: 171 PTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE----MER 224
           P+ASV++      +   A+   I HLV+++VP +    V+++D TGKLL+ +      + 
Sbjct: 168 PSASVLLTLYPGRILDRAQIAGIVHLVSSSVPEMKPEAVSIVDDTGKLLSQSPDGAAGQD 227

Query: 225 NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV 284
            +  + L  VQ I+ +    I   L   +G  N ++ V A+++    +     + P+   
Sbjct: 228 GVDTQQLKYVQQIEAQYRQRILDILEPVVGKGNVQAQVTADVDFSQSEQTSETHTPNQAP 287

Query: 285 ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRS------------------- 325
           +     S+  Q  E++ P  A      +P     + P P S                   
Sbjct: 288 DTGAVRSQ--QTLESTNPGPAGP--SGIPGAVSNQPPGPNSAPINAAAQALAPGVPQAQA 343

Query: 326 -------------LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372
                           + +KE   NYE++            ++RLS AVVVN+    +  
Sbjct: 344 QAQGRAGQTAQAAAPVSTRKESVINYEVDKTVRVVRAARGAIKRLSAAVVVNQRTQADAR 403

Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN-------QLFNSGTVQ 425
           G  A        + ++  +V  + G N  RGD++ + +  F+ +         +    VQ
Sbjct: 404 GNVAPVPLTQQQVDQMTALVRESIGFNGDRGDSVNLMNAPFVVDAKADESLAFWQQPAVQ 463

Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHA 459
               D L+     V+ ALV L G +      + A
Sbjct: 464 ELARD-LAWPVGAVLLALVVLFGVVRPVLKAMQA 496


>gi|87119487|ref|ZP_01075384.1| flagellar M-ring protein [Marinomonas sp. MED121]
 gi|86164963|gb|EAQ66231.1| flagellar M-ring protein [Marinomonas sp. MED121]
          Length = 551

 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 105/412 (25%), Positives = 200/412 (48%), Gaps = 30/412 (7%)

Query: 21  RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80
           R L L   +   I + +AA  + + P Y  +   +   + ++I   LS  NI F++ +N 
Sbjct: 28  RQLALMVGLAASIAIGLAAILWTDGPEYKPVLSSITDYNADQIVEVLSINNIPFKLDENT 87

Query: 81  SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140
            ++ V +    +AR+ LA  G+  + +  G E+ D+    G + F++     R LEGE++
Sbjct: 88  GALLVEADQYHQARLKLAGSGI-VNDTIVGMEIMDQEQGLGTSQFVEGTRYRRGLEGELS 146

Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLV 195
           RTI S+  I +ARVH+ +P    F +   +P+ASV +     R ++ S     +AI +LV
Sbjct: 147 RTISSLQSIKSARVHLAIPKESVFVRDTRKPSASVFLEMYPGRRLDRS---QVDAIVNLV 203

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSLSIVQAIQHEIEMNINKALAAFL 253
           ++++  L    VTV+D  G LL+  E   E ++ GK     + ++  +   +N  L   +
Sbjct: 204 SSSISQLSAKSVTVVDQRGTLLSEKETSSELSVAGKQFDYTRKVEDVLLSRVNSILGPVV 263

Query: 254 GVDNFRSAVVAELNMDTQQIREIVYDPD---SKVERSIRLSKDAQR------SETSQPES 304
           G D F++ V  +++  + +  +  Y+PD    + E+++  S++         S T+QP  
Sbjct: 264 GADRFKAEVSTDVDFTSVEQTDEQYNPDLLALRSEQTLNESRNGTTNSGIPGSLTNQPPG 323

Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
           A+T     P V++             ++E   N+E++     T      + RLS+AVVV+
Sbjct: 324 AITA----PEVAN-SAGAASGTNGESRQETTRNFELDRSISYTRRQQGTIRRLSVAVVVD 378

Query: 365 KGRLTEVLGRSADQGKI---DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
              L  +   +++  +    D  L+ +  +V  A G +S RGD++++ +  F
Sbjct: 379 D--LVSIDPETSELVRTPWSDDELSRLTLLVRDAVGYDSARGDSVSVINSPF 428


>gi|325288778|ref|YP_004264959.1| flagellar M-ring protein FliF [Syntrophobotulus glycolicus DSM
           8271]
 gi|324964179|gb|ADY54958.1| flagellar M-ring protein FliF [Syntrophobotulus glycolicus DSM
           8271]
          Length = 534

 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 108/408 (26%), Positives = 202/408 (49%), Gaps = 45/408 (11%)

Query: 21  RILILAS--VILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           R++++A+  V+L  + + +    + ++P Y  L+ KL  ++   I+  L + N  +++ +
Sbjct: 24  RVILIAAPLVVLTALTILI---VWASTPSYAVLFSKLSSTEAGAITTKLKDLNYSYKLEE 80

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           +G++I VP S + + R+ LA  GLP  S+ S +E  ++V+  G T   +++  V  L+ E
Sbjct: 81  SGATIQVPESQLAQIRLDLANAGLPQKSTFS-FENLNEVH-LGETDKDRQLRYVLGLQNE 138

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIR---HLV 195
           +  TIQ++ GI  ARVHIV+P+   F +     TA+V ++  NP    SA+ +R   +L+
Sbjct: 139 LETTIQTMDGIEYARVHIVIPEQSLFTEKQTESTAAVTVKK-NPGTELSADQVRAIANLL 197

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK----SLSIVQAIQHEIEMNINKALAA 251
             +V  L +  VT++D+ G +L ++E+ ++   +     L + Q++++ I+ ++   L  
Sbjct: 198 VYSVEGLQIEKVTIVDTNGNVL-SDELGKDKTNRMSVTDLQLQQSVENNIQKSVQTMLDK 256

Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311
             G         A LN D Q+I    +  D  +E          R ETS+  S       
Sbjct: 257 AFGAGKTIVRTNAALNFDQQKITSQTH-TDGAIES---------RQETSERVSDGQTTGG 306

Query: 312 MPHVSDRKVPLPRSLENTD------KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365
           +P  ++  +P   + E TD      K     NY+ N     T     +++RL+I+V+ + 
Sbjct: 307 VPG-TETNIPTYPADEQTDQGTISEKYTSTENYQPNVVQEETVVSPGQIKRLTISVMADT 365

Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
             +T      A Q      L+ I  IV++A G++  RGD I +  + F
Sbjct: 366 DSIT------AQQ------LSNIEAIVASAAGVDQNRGDVIQVAGLPF 401


>gi|264676594|ref|YP_003276500.1| flagellar M-ring protein FliF [Comamonas testosteroni CNB-2]
 gi|299531261|ref|ZP_07044671.1| flagellar M-ring protein FliF [Comamonas testosteroni S44]
 gi|262207106|gb|ACY31204.1| flagellar M-ring protein FliF [Comamonas testosteroni CNB-2]
 gi|298720668|gb|EFI61615.1| flagellar M-ring protein FliF [Comamonas testosteroni S44]
          Length = 568

 Score =  124 bits (310), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 167/343 (48%), Gaps = 23/343 (6%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           F   P Y  L+  +   D   I   L++ N+ ++ S+ G +I +P+  V   R+ LA QG
Sbjct: 56  FYRQPDYKLLFSNVSDKDGGAIVAQLTQMNVPYKYSEGGGAILIPADRVHDVRLKLATQG 115

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP  S  +G+EL +  + FG+T F + +   R LEGE+ R+I +++ + +ARVH+ +P+ 
Sbjct: 116 LPKGSV-TGFELMEN-SKFGITQFQERLNFQRGLEGELTRSILALNAVQSARVHLALPNQ 173

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +   +P+ASV++      +   A+   I HLVA++VP ++   V+V+D TGKLL+ 
Sbjct: 174 NGFFREQQKPSASVLLSLHPGRMLDRAQIAGIVHLVASSVPEMEPAAVSVVDDTGKLLSQ 233

Query: 220 NEMERNILG---KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           +  + N  G   +     Q ++ +    I   L   +G +N ++ V AEL+    +    
Sbjct: 234 SP-DGNAGGVDMQQFLYTQQVEQQYVRRILDILEPVVGKNNVKAQVSAELDFSQTESTSE 292

Query: 277 VYDPDSKVERSIRLSKDAQRS---ETSQPESAV--TVEQNMPHVSDRKV----PLP---- 323
            + P+   +     S+    +   +T+ P + V        P  S   +    P P    
Sbjct: 293 QHRPNQSADGGAVRSQQVMETNGEKTATPPTGVPGATSNQPPQNSTAPINGANPAPQAAG 352

Query: 324 --RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
             +     +K+E  +NYE++     T      ++RL+ AVVVN
Sbjct: 353 AGQGNGQGNKRESITNYEVDKTVRVTRGSTGTVKRLTAAVVVN 395


>gi|256020214|ref|ZP_05434079.1| flagellar MS-ring protein [Shigella sp. D9]
 gi|332281376|ref|ZP_08393789.1| lateral flagellar M-ring protein [Shigella sp. D9]
 gi|332103728|gb|EGJ07074.1| lateral flagellar M-ring protein [Shigella sp. D9]
          Length = 548

 Score =  124 bits (310), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 113/415 (27%), Positives = 199/415 (47%), Gaps = 51/415 (12%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           L +A+  ++  +L+   R +V+      LY + E   V++I   L    + +RI      
Sbjct: 33  LAVAATAIIVSVLWTGNRGYVS------LYGRQENLPVSQIVTVLDGEKLTYRIDPQSGQ 86

Query: 83  ISVPSSMVGKARIHLAAQG----LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           I VP   + K R+ LAA+G    LPS     GYEL DK    G + F+Q +   R+LEGE
Sbjct: 87  ILVPEEALSKTRMTLAAKGVQAILPS-----GYELMDKDEVLGSSQFVQNVRYKRSLEGE 141

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARP--TASVMIR-----AINPSVYKSAEAI 191
           +A++I S+  + +ARVH+ + +  SF  +   P  +ASV++R      +N        AI
Sbjct: 142 LAQSIMSLDAVESARVHLALNEESSF-VVSDEPQNSASVVVRLHYGAKLN---MDQVNAI 197

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            HLV+ ++P L    V+V+D  G LLT    A E       K   I++ IQ +   ++  
Sbjct: 198 VHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTHASVAN 257

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAV 306
            L + +G  N+R +V+ EL++ T    +  Y    K+ R    L  D  +     P S  
Sbjct: 258 VLDSLVGSGNYRVSVMPELDLSTIDETQEHYGDAPKINREESVLDSDTNQVAMGVPGSL- 316

Query: 307 TVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
               N P V+  ++         P +L    + +   +Y+ + + I   H  + ++RL++
Sbjct: 317 ---SNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHI--QHPGFAVKRLNV 371

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           AVV+N+          A +       A++  +++ A GI+++RGD +T++ ++F+
Sbjct: 372 AVVLNQ-------NAPALKNWKPEQTAQLTALLNNAAGIDAQRGDNLTLSLLNFV 419


>gi|296274027|ref|YP_003656658.1| flagellar M-ring protein FliF [Arcobacter nitrofigilis DSM 7299]
 gi|296098201|gb|ADG94151.1| flagellar M-ring protein FliF [Arcobacter nitrofigilis DSM 7299]
          Length = 580

 Score =  124 bits (310), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 185/365 (50%), Gaps = 36/365 (9%)

Query: 67  LSEANIDFRISDNGSSISVPSS--MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
           L  + I F +  +G+S+++ +S   +  A+I L      ++S + G+E+F+K +S G T+
Sbjct: 66  LEASGILFSVVGSGNSLTLKTSKEFINIAKIKLVTSD-AATSKHVGWEIFEK-SSLGTTN 123

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           F  ++  +RALEGE++R+++S+SGI+ A V + +P    F +    PTAS ++  + P V
Sbjct: 124 FENKVKYLRALEGELSRSLESLSGILRASVKLAIPKETIFTERKTPPTASAVL-TLKPGV 182

Query: 185 Y---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQA----- 236
           Y   K  + I++ +A+A+PNL   ++ ++D  G +L  ++ E + L    S+ Q      
Sbjct: 183 YLTQKQIDGIKNFIASAIPNLTTNNIKLIDQDGSILEQSKEEADNLS---SVTQNKYKKR 239

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           ++ + E  I   L  F+G     + V   LN   +  +E +Y+P    E +IR  +  + 
Sbjct: 240 LEKDFESKIVDLLEPFVGKGRVVARVSLSLNFSKKHTQEEIYEP----EGTIRSQQTTES 295

Query: 297 SETSQPESAVTVEQNMPHV-SDRKVPLPRSLENTDKKEEQS-----NYEINTKSIATTHD 350
             TS  +  V     +P V S+ + P P   + T+  + ++     NYEI+ + I     
Sbjct: 296 --TSSSDGVVKDTAAVPGVQSNIQAPQPEGNKGTNSSKNETSKNIVNYEISKRVIDHEDK 353

Query: 351 NYK-LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
           NY  + +++ AV  +   LT V  +       D ++  I ++V    G + +RGD IT+ 
Sbjct: 354 NYSTINKITAAVTFDSAALTNVQNK-------DEFINNIVEVVQDTIGYDEKRGDKITVK 406

Query: 410 SMDFL 414
              F+
Sbjct: 407 DFKFV 411


>gi|331645402|ref|ZP_08346506.1| flagellar M-ring protein FliF [Escherichia coli M605]
 gi|331045564|gb|EGI17690.1| flagellar M-ring protein FliF [Escherichia coli M605]
          Length = 548

 Score =  124 bits (310), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 109/414 (26%), Positives = 201/414 (48%), Gaps = 38/414 (9%)

Query: 21  RILILASVIL-VPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN 79
           R +++A V L V +   + +  +  +  Y +LY + E   V++I   L    + +RI   
Sbjct: 24  RWVLMAGVGLAVAVTAIIVSVLWTGNRGYVSLYGRQENLPVSQIVTVLDGEKLTYRIDPQ 83

Query: 80  GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEI 139
              I VP   + K R+ LAA+G+  +   SGYEL DK    G + F+Q +   R+LEGE+
Sbjct: 84  SGQILVPEDALSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSSQFVQNVRYKRSLEGEL 142

Query: 140 ARTIQSISGIVAARVHIVMPDMGSFRKIGARP--TASVMIR-----AINPSVYKSAEAIR 192
           A++I S+  + +ARVH+ + +  SF  +   P  +ASV++R      +N        AI 
Sbjct: 143 AQSIMSLDAVESARVHLALNEESSF-VVSDEPQNSASVVVRLHYGAKLN---MDQVNAIV 198

Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINKA 248
           HLV+ ++P L    V+V+D  G LLT    A E       K   I++ IQ +I  ++   
Sbjct: 199 HLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKIRASVANV 258

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVT 307
           L + +G  N+R +V+ +L++ T    +  Y    K+ R    L  D  +     P S   
Sbjct: 259 LDSLVGTGNYRVSVMPDLDLSTIDETQEHYGDAPKINREESVLDSDTNQVAMGVPGSL-- 316

Query: 308 VEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
              N P ++  ++         P +L    + +   +Y+ + + I   H  + ++RL++A
Sbjct: 317 --SNRPPIAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHI--QHPGFAVKRLNVA 372

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           VV+N+          A +        ++  +++ A GI+++RGD ++++ ++F+
Sbjct: 373 VVLNQ-------NAPALKNWKPEQTTQLTALLNNAAGIDAQRGDNLSLSLLNFV 419


>gi|330502763|ref|YP_004379632.1| flagellar MS-ring protein [Pseudomonas mendocina NK-01]
 gi|328917049|gb|AEB57880.1| flagellar MS-ring protein [Pseudomonas mendocina NK-01]
          Length = 594

 Score =  123 bits (309), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 147/604 (24%), Positives = 258/604 (42%), Gaps = 93/604 (15%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++   +   R L L   +   + +  A   +   P Y  LY  L   D  ++   L
Sbjct: 25  LSFLENLAEMSVLRQLGLLVGLAASVAIGFAVVLWSQQPDYRPLYGSLNGMDATQVVETL 84

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + + ID+ I  N  ++ V +  + +AR+ LAA G   + ++ G+E+ D+    G + FM+
Sbjct: 85  TASGIDYTIEPNSGALLVKADDLARARMRLAAAGAAPTDTSVGFEILDREQGLGTSQFME 144

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINP 182
                R LEGE+ART+ S++ + AARVH+ MP    F +   +P+ASV++     RA+ P
Sbjct: 145 ATRYRRGLEGELARTVASLNNVKAARVHLAMPKASVFVRDERKPSASVLVELYPGRALEP 204

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHE 240
           S      AI +LVA +VP LD G VTV+D  G LL+  +   E  + GK     + ++  
Sbjct: 205 S---QVMAIVNLVATSVPELDKGQVTVVDQKGNLLSDQQELSELTMAGKQFDYTRRMEGL 261

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               ++  L   LG   +++ V A+++  + +    +++PD    RS +   + ++S  S
Sbjct: 262 FTQRVHNILQPVLGTGRYKAEVSADVDFSSVESTSEMFNPDQPALRSEQQVNEQRQS--S 319

Query: 301 QPESAVT---------------------------------VEQNMPHVSDRKVPLPRSLE 327
            P   V                                  V+ N   + D     P    
Sbjct: 320 LPPQGVPGALSNQPPGPAAAPQQAAGAAAPAGPVAAGQPLVDANGQQIMDPATGQPMLAP 379

Query: 328 NTDKKEEQS--NYEINTKSIATTHDNYKLERLSIAVVVNK--------GRLTEVLGRSAD 377
               K EQS  N+E++     T     +L RLS+AVVV+         G  T V   + D
Sbjct: 380 YPADKREQSTRNFELDRSISYTRQQQGRLRRLSVAVVVDDQVRVDPATGETTRVPWTADD 439

Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF---LENQLFN-SGTVQVSFMDILS 433
                  LA   ++V  + G ++ RGD++++ +  F   L  ++ +     Q  F DI+ 
Sbjct: 440 -------LARFTRLVQDSVGFDASRGDSVSVINTAFTASLGEEIPDIPFYTQPWFWDIV- 491

Query: 434 RHFATVINALVFLVGTL---LVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVT 490
           +    V+  LV + G L   L    G    + L    D + GE+ G              
Sbjct: 492 KQVLGVLFILVLVFGVLRPVLNNITGGGRGKDLAGSGDVELGEMAG-------------L 538

Query: 491 TGLMPNDNIALDSSNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549
            G + +D ++L      +  S S    +++N+  S         ++  +  R A+++++W
Sbjct: 539 DGELSDDRVSLGGPQSIMLPSPSEGYDAQLNAIKS---------LVAEDPGRVAQVVKEW 589

Query: 550 ARSE 553
             S+
Sbjct: 590 INSD 593


>gi|254519422|ref|ZP_05131478.1| flagellar MS-ring protein [Clostridium sp. 7_2_43FAA]
 gi|226913171|gb|EEH98372.1| flagellar MS-ring protein [Clostridium sp. 7_2_43FAA]
          Length = 523

 Score =  123 bits (309), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 110/404 (27%), Positives = 196/404 (48%), Gaps = 38/404 (9%)

Query: 21  RILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSDVNRISVALSEANIDFRISDN 79
           RI I+A+  LV  ++ + + FF NS + Y  L+  L+ SD   ++  L E  +D +I   
Sbjct: 26  RIAIIAA--LVTFIIAIGSLFFYNSANKYKVLFSNLDASDAQLVTNKLKEKKVDMKIE-- 81

Query: 80  GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEI 139
           G +I VP + V + R+ LA +    S  + GYEL D  NSFG+T    ++ ++R  +GE+
Sbjct: 82  GETIMVPKASVDELRLELAPE---LSDGSKGYELMDTGNSFGMTDEEFKLKKLRMQQGEL 138

Query: 140 ARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI--NPSVYKSAEAIRHLVAA 197
            +TI+S   I   RVHI       F +      A+V ++ +  N    +  E+I  LV+ 
Sbjct: 139 EKTIKSFPQIDTVRVHITPSKDSVFVEDKEPGKAAVYLKLLPGNKLGKEQVESIVALVSG 198

Query: 198 AVPNLDMGDVTVLDSTGKLLTAN-------EMERNILGKSLSIVQAIQHEIEMNINKALA 250
           +  N+   ++ V+D    LLT +       E+    + K  ++ +  + +I+ +I   L 
Sbjct: 199 STENVPKENIEVIDDNMNLLTKDLNNSDGTEVSSETIEKQFNLEKKYEEDIQKSIIDLLE 258

Query: 251 AFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQ 310
             +G +  +S+V  +L+ D++Q  E + DP+ KV  S +  K+     T +  S   V+ 
Sbjct: 259 PVVGKNKVKSSVNVDLDFDSKQKTETIIDPN-KVIVSQQTIKEKNGINTGE-NSGGPVDN 316

Query: 311 NMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTE 370
           NM +  D       +   + ++E  +NYE       T     +++RL+ +V ++      
Sbjct: 317 NMGNTIDEGT----TGNGSSREEVNTNYESGKTETKTISAPGEVKRLTASVFID------ 366

Query: 371 VLGRSADQGKIDSYL-AEINKIVSAATGINSRRGDTITITSMDF 413
                   G ID  + A I K V+ A G+N+ RGD++++  M F
Sbjct: 367 --------GNIDGNVQAAIEKSVANAIGLNTERGDSVSVVGMTF 402


>gi|91795006|ref|YP_564657.1| flagellar MS-ring protein [Shewanella denitrificans OS217]
 gi|91717008|gb|ABE56934.1| flagellar M-ring protein FliF [Shewanella denitrificans OS217]
          Length = 565

 Score =  123 bits (309), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 108/403 (26%), Positives = 195/403 (48%), Gaps = 41/403 (10%)

Query: 24  ILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSI 83
           ++ASVI+  IML+ A      S  Y  LY   E  + +++   L    I +RI  +   +
Sbjct: 48  VVASVIV--IMLWTA------SQGYRPLYGSQENVETSQVIEVLEAEGIYYRIESHTGLV 99

Query: 84  SVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTI 143
            V    +GKAR+ LAA+G+ +    SG +  D  +S G + FM++      LEGE+AR+I
Sbjct: 100 LVADDQLGKARMLLAARGVKAKVP-SGMDELDS-SSLGTSQFMEQAKYRHGLEGELARSI 157

Query: 144 QSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINPSVYKS---AEAIRHLVAAAV 199
            S+  + +ARVH+ +P    F R+    PTASVM++ ++P    S    EA+ +LVA +V
Sbjct: 158 MSLKNVRSARVHLAIPKRSLFIRQTPELPTASVMLQ-LSPGAELSQSQVEAVVNLVAGSV 216

Query: 200 PNLDMGDVTVLDSTGKLLTANEMERNILGKS----LSIVQAIQHEIEMNINKALAAFLGV 255
             ++   V ++D  G+ L+AN  E   + ++    ++  + ++  +  N +  L A LG 
Sbjct: 217 TGMETSGVKIVDQEGRFLSANINEDQDMTQARDRQITYTRELEQNLMHNASSMLEAILGP 276

Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV 315
           +NF+  + A++N +  +  +   DP S +           +  TS  +    + Q +P  
Sbjct: 277 NNFQVKIAAKVNFNQIEETKEALDPQSVL----------VQERTSSDDKNAALAQGIPGA 326

Query: 316 SDRKVPLPRSLENTD-----KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTE 370
              + P     +  D     ++E    +++        +   +LE +S++V+VN    T 
Sbjct: 327 LSNQPPQAAEGDKKDNTRNLRQEANRQFDVGRSVRHIRYQQMQLENISVSVLVNN---TV 383

Query: 371 VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
             G + D    D+ L ++  +V  A G +S RGD+ +I +  F
Sbjct: 384 ATGLTTD----DAELTKLGSMVKDAIGFSSERGDSFSINAFAF 422


>gi|190574239|ref|YP_001972084.1| flagellar MS-ring protein [Stenotrophomonas maltophilia K279a]
 gi|190012161|emb|CAQ45784.1| putative flagellar M-ring protein [Stenotrophomonas maltophilia
           K279a]
          Length = 548

 Score =  123 bits (309), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 112/449 (24%), Positives = 201/449 (44%), Gaps = 12/449 (2%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
           Q+F    SL  TR L L ++I V +   ++  F+   P    LY  L+       +  L 
Sbjct: 17  QWFDRLQSLQITRRLGLMAMIAVAVAAGLSVFFWSQKPGMVPLYTGLDQKATAEATDLLR 76

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
            A I F +      I+VP   +  AR+ LA  GL + S   G+EL ++   FG++ F++ 
Sbjct: 77  AAQIPFALDPATGGITVPEKNLHDARLKLAGSGL-TDSGKLGFELMERDPGFGVSQFVES 135

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYK 186
                ALE E++RTI ++  +  +RVH+ +P   +F +     +ASV   +R        
Sbjct: 136 ARYQHALETELSRTINTLRPVRDSRVHLAIPKPSAFTRQRDVASASVTLELRGGQQLERS 195

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN-- 244
             +AI H+VAA++P+L    VTV+D +G++L+  +        +    Q  + E   N  
Sbjct: 196 QVDAIVHMVAASIPDLAPERVTVVDQSGRMLSITDPNSEAAVNAAQFEQVRRQETSFNQR 255

Query: 245 INKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           I + L    G       V  +++   T++ RE+ Y+ + +  RS ++S++   + T  P+
Sbjct: 256 IRELLEPMTGPGRVNPEVSVDMDFSVTEEAREL-YNGEPQKLRSEQMSENT--TSTPGPQ 312

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
                  N P    +  P          K    NYE++     T     +++R+S+AV+V
Sbjct: 313 GVPGATSNSPP-GQQAAPATAQTPTESSKNATRNYELDRTLQHTRQPAGRIKRVSVAVLV 371

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           +        G+ + Q    + L  +  +V  A G N+ RGDT+++ +  F+ +     G 
Sbjct: 372 DNVPRAGANGKMSPQPLSAAELTRVEALVKQAVGFNAERGDTVSVMNAPFVRDTTPVEGP 431

Query: 424 V--QVSFMDILSRHFATVINALVFLVGTL 450
              ++ ++    R     +  L  L G L
Sbjct: 432 AWWELPWVHDAGRMLLGAVVVLALLFGVL 460


>gi|157147120|ref|YP_001454439.1| flagellar MS-ring protein [Citrobacter koseri ATCC BAA-895]
 gi|157084325|gb|ABV14003.1| hypothetical protein CKO_02897 [Citrobacter koseri ATCC BAA-895]
          Length = 540

 Score =  123 bits (309), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 117/407 (28%), Positives = 194/407 (47%), Gaps = 68/407 (16%)

Query: 48  YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           Y  LY   E   V+++   L   NI +RI+ +   I V  S + +AR+ LAA+G+ S+++
Sbjct: 24  YVALYGSQEHLPVSQVVDVLGAENIAYRINPDNGQILVSESKLPQARMALAAKGI-SAAT 82

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
             GYEL DK    G + F+Q +   R+LEGE+A++I ++  +  ARVH+ + +  SF  +
Sbjct: 83  PDGYELMDKEEMLGSSQFIQNVRYKRSLEGELAKSIMALDPVENARVHLGLNESSSF-VL 141

Query: 168 GARPT--ASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-- 218
             +PT  ASVM+     R ++    +   ++  LVA +VP +  G V V+D +G LL+  
Sbjct: 142 TNKPTSSASVMVQLHYGRKLD---EQQVASVIQLVAGSVPGMQPGAVRVVDQSGNLLSDG 198

Query: 219 ----ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
                  M    +G    ++Q I+ +   NI   L + +G  NFR +V   +++      
Sbjct: 199 IEGPDGGMTSKRMGD--DVMQRIREDTTKNITSLLTSLVGPGNFRISVAPTVDL------ 250

Query: 275 EIVYDPDSKVERSI-RLSKDAQRSETSQPESAVTVEQ--NMP-HVSDRKV-PLPRSLEN- 328
                  S+VE +  RL KD + S+    +   T E    +P  +S+R V P P++  N 
Sbjct: 251 -------SRVEETQERLGKDPRVSDEQLSQENTTNEMAFGIPGSLSNRPVNPTPQTPANP 303

Query: 329 ----------------TDKK------EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
                           TD +      +EQ  Y  +       H  YKLE+LS+AVV+N+ 
Sbjct: 304 AEGNPPAENAANAANNTDPRSLSSRSQEQRKYAFDRDIRHIRHPGYKLEKLSVAVVLNQA 363

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
                L +   +      L  + ++V +A GI   RGD +T+  + F
Sbjct: 364 --APALAKITPE-----QLTSMTRLVESAAGIEKARGDALTLDVLTF 403


>gi|256833241|ref|YP_003161968.1| flagellar M-ring protein FliF [Jonesia denitrificans DSM 20603]
 gi|256686772|gb|ACV09665.1| flagellar M-ring protein FliF [Jonesia denitrificans DSM 20603]
          Length = 534

 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 123/421 (29%), Positives = 201/421 (47%), Gaps = 43/421 (10%)

Query: 3   ILDQLLQFFKSGTSLGRTRILI-LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           +  +L    +  T   RT  LI LA VI+  + L M    +   P    LY  L  +D  
Sbjct: 8   VFTRLFSAIREFTVAQRTLALIGLAGVIVALVALAM----WATRPQMQPLYTDLAPADAA 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L+   + +++++ GS+I VPS  V   R+ +A+ G+ S S+  GY L D   + G
Sbjct: 64  AIVDQLAANGVQYQLTNGGSTILVPSGQVYDQRLKVASSGI-SPSAEGGYSLLD---NMG 119

Query: 122 LTS--FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           +TS  F Q +T  RALEGEIA+TI +++GI  A V + MP+   F    A PTASV ++ 
Sbjct: 120 MTSSDFQQNVTYKRALEGEIAKTITAMNGIEVASVQLAMPEDTVFVSQSADPTASVFVKP 179

Query: 180 INPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI 237
                    +  AI   V+AAV  + + +V V+DS G++L+A        G +L   Q  
Sbjct: 180 KAGVTLADDQVAAITQFVSAAVEGMKVENVAVIDSDGQVLSAMG-GSGTHGTNLKETQQY 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPDSKVERSIRLSKDAQR 296
           +  I  ++   L   LG      +V AEL+ D T+++ E  YD +   E ++ L++    
Sbjct: 239 EQRIAASLQGMLDRILGNGMAVVSVTAELDFDATERVSE-SYDSN---EDALPLTERETT 294

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLEN---TDKKEEQSN-YEINTKSIATTHDNY 352
            E +   +A  V      +    + +P    +   T+   E++N  +  T+ I T     
Sbjct: 295 EEYTGTGNAAGV------LGPDNIAVPEGQTDGNYTNTSSERNNAVDKTTERIVTAPGTV 348

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
           +  R S++V V++            Q      + ++  +V+AA GI+  RGDT+T+T M 
Sbjct: 349 R--RQSVSVAVDQ------------QAAATININDLQAMVTAAAGIDEERGDTVTVTRMA 394

Query: 413 F 413
           F
Sbjct: 395 F 395


>gi|163789650|ref|ZP_02184088.1| flagellar M-ring protein fliF [Carnobacterium sp. AT7]
 gi|159875182|gb|EDP69248.1| flagellar M-ring protein fliF [Carnobacterium sp. AT7]
          Length = 524

 Score =  123 bits (308), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 121/451 (26%), Positives = 220/451 (48%), Gaps = 48/451 (10%)

Query: 15  TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF 74
           T+LG+++ + L  V+   I +  A  ++     Y  L+  LE +D   I   +    ID+
Sbjct: 16  TNLGKSKRIGLVMVLFFVISIVTAMTYYTQKVEYATLFSNLEEADAGTIVNDIKTKGIDY 75

Query: 75  RISDNGSSISVPSSMVGKARIHLAAQG-LPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
           ++ DNG++I +  + V   RI LA    LP S+  +G+E+FD+  S   T   ++I   R
Sbjct: 76  KLEDNGTTILIDQAQVDAYRIELAVNDLLPKST--TGFEIFDET-SMMATDEDRKIMYQR 132

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMIRAINPSVY--KSAE 189
           A+ GE+ R+I ++  I  A+V + +P+   F   +  ++ +ASV++  ++ S     + +
Sbjct: 133 AVTGELERSISALDSIEEAKVMLSLPEDSVFTSEENQSKASASVVLTPLSGSQIPANAVQ 192

Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERN-----ILGKSLSIVQAIQHEIEM 243
            I  L++ AV NL   ++ ++D+ G LL+ A E E N     ++ K  +I  + + ++E 
Sbjct: 193 GIASLISGAVDNLPKENIKIVDTAGNLLSVALEDEVNLNATDLVSKYQAITNSYEQQLEQ 252

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET-SQP 302
            + + L    G+D    AV A++N D+ +  EI+   DS V           RSET S  
Sbjct: 253 KLLQTLGPIYGIDKLTVAVNADMNFDSSE-SEIINYGDSSV-----------RSETVSAG 300

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLE--NTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
              + VE+      D  +    S E       +  +NYE+N+++  T     ++ERLS +
Sbjct: 301 GKTIGVEEGEGF--DNAINQVTSGEEGGNSTYDRTTNYELNSETTNTIKAPGEVERLSTS 358

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           V+ + G L+      AD+  +++       IV+A  G  + R D I+I  +DF  +    
Sbjct: 359 VIFD-GNLS-----PADKESLEA-------IVAATVGTVAEREDVISIQGIDFATSTEVV 405

Query: 421 SGT----VQVSFMDILSRHFATVINALVFLV 447
             T    ++ S  D L R++  ++  LV L+
Sbjct: 406 EPTAPEQLKSSIRDTLLRYWPYLVGGLVLLI 436


>gi|294084401|ref|YP_003551159.1| flagellar M-ring protein FliF [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292663974|gb|ADE39075.1| flagellar M-ring protein FliF [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 572

 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 116/423 (27%), Positives = 200/423 (47%), Gaps = 49/423 (11%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           R  +   A++I     LF+    F+ +P    LY  L  S+  R+  AL  + ++  +  
Sbjct: 39  RRALPTFAAIIFAVAGLFVF--VFMQAPQRTTLYASLPESEKARVVEALINSGVEVTLDP 96

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
               + VP+S   +A++ LAAQGLP+S  + GY     +   G +  ++ +   ++ E E
Sbjct: 97  TTGDVLVPTSDFHQAKMSLAAQGLPTSVPD-GYASVGDI-PMGSSRSVENVRLKQSQEIE 154

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEAIRHLVA 196
           +AR+I  I G+V+ARVH+ +P+   F +    PTASV I+  N     S   EA+ HLV+
Sbjct: 155 LARSIGEIDGVVSARVHLAIPEKSVFARNATPPTASVFIQMNNGRTLGSQQVEAVVHLVS 214

Query: 197 AAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEM-NINK-----A 248
           ++VP++   DVTV+D  G LL+   N+M       SL     +QH I + NI +      
Sbjct: 215 SSVPSMAKTDVTVVDQFGALLSNPTNDM------ASLLSDSQLQHRIRLENIYRNRVISL 268

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308
           ++  +G  N  S +  +++    +  E   DPD    RS + S D +    +        
Sbjct: 269 VSPIVGAGNVTSQINIDIDYTRSETTEERVDPDGNALRSEQKSVDMKSDANA-------- 320

Query: 309 EQNMPHVSDRKVPLPRSLE-------------NTDKKEEQSNYEINTKSIATTHDNYKLE 355
            + +P  +  + PL   ++             +T    E  NYE++     T   + ++ 
Sbjct: 321 -RGIPGATANRPPLQSEIDSVQADDAGAKGSVSTQSSNEVRNYEVSRTVSTTQSPSTRIV 379

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSY----LAEINKIVSAATGINSRRGDTITITSM 411
            +  AV+V   R  EV+       ++  +    LAEI K+V+ A GI++ RGD +T++S 
Sbjct: 380 GIQAAVLV---RDKEVVNPETGLMEVVPFTPEKLAEIEKLVANAIGIDAERGDKLTVSSS 436

Query: 412 DFL 414
            F+
Sbjct: 437 AFV 439


>gi|157738171|ref|YP_001490855.1| flagellar M-ring protein FliF [Arcobacter butzleri RM4018]
 gi|157700025|gb|ABV68185.1| flagellar M-ring protein FliF [Arcobacter butzleri RM4018]
          Length = 574

 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 117/470 (24%), Positives = 233/470 (49%), Gaps = 51/470 (10%)

Query: 4   LDQLLQFFKSGTSLGRTRILILAS------VILVPIMLFMAARFFVNSPHYDNLYVKLEV 57
           +DQLL+F     +L +++ +IL S      +I+V  +++ + +      +Y  +   L  
Sbjct: 1   MDQLLKFI---NNLNKSQRIILVSGFALLFIIVVGFLIYSSIKAEDKKLNY-TIASNLTQ 56

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSS--MVGKARIHLAAQGLPSSSSNSGYELFD 115
           +DV R S  L  + I F +S +G+++++ +S   +  A+I L      +++ + G+E+F+
Sbjct: 57  ADVMRASEELEASGIQFVVSGSGNNLTLKTSQEFINIAKIKLVTSE-AATNKHVGWEIFE 115

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
           K +S G T+F  ++  +RALEGE++R+++S+SG++ A V I +P    F +  A  TAS 
Sbjct: 116 K-SSLGTTNFENKVKYLRALEGELSRSLESLSGVLKANVKIAIPKETIFTEKRADTTASA 174

Query: 176 MIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL- 231
           +I ++   ++   K  + I++ +A+AVP+L   ++ ++D  G LL  N  E N +  +  
Sbjct: 175 VI-SLKQGIHLTKKQIDGIKNFIASAVPDLKQENIQLIDQDGNLLEQNIDEENTIKSAAQ 233

Query: 232 -SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290
                 I+ + E  I   L   +G     + V   L+   + + E +Y P+  + RS ++
Sbjct: 234 NKYKDKIEKDYEAKIISLLEPVVGTGRVVAKVNVALDFVKKDVEEEIYSPEGSI-RSQQV 292

Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSL-------ENTDKKEEQSNYEINTK 343
            ++   ++   P +       +  V D  + +P ++        N++     +NYEI+ K
Sbjct: 293 IENTNNTQGMLPNNG-----GVAGV-DNNIQVPTTVGDGSKISSNSEGSNTVTNYEISRK 346

Query: 344 SIATTHDNY-KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402
            I+    NY  ++R++ +V  +    + +L    D+G+   ++A +  +   A G +  R
Sbjct: 347 VISQKDGNYTNIKRITASVTFD----SAILKDHPDKGE---FIASLESLSGDAIGYDRGR 399

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINA--LVFLVGTL 450
           GDTIT+    F+  +  N     V         F  VIN+   + +VGT+
Sbjct: 400 GDTITVKDFKFVGAKALNENGQLVD-------EFGNVINSGDGISVVGTM 442


>gi|330946121|gb|EGH47363.1| flagellar MS-ring protein [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 236

 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/235 (32%), Positives = 120/235 (51%), Gaps = 10/235 (4%)

Query: 37  MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIH 96
            A   +   P Y  LY  L   D  +I   L+ ANI++ +  N  ++ V S  V +ARI 
Sbjct: 5   FAVVLWSQQPDYRPLYGSLAGMDSKQIMDTLTAANINYTVEPNSGALLVKSDDVQRARIQ 64

Query: 97  LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHI 156
           LA  G+  S +N G+E+ DK    G + FM+     R LEGE+ARTI +++ +  ARVH+
Sbjct: 65  LAQAGVVQSDANIGFEILDKDQGLGTSQFMEATRYRRGLEGELARTISALNNVKGARVHL 124

Query: 157 VMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLD 211
            +P    F +   +P+ASV++     R++ PS      AI +LVA +VP L    +TV+D
Sbjct: 125 AIPKSSVFVRDDRKPSASVLVELYAGRSLEPS---QVLAIINLVATSVPELSKSQITVVD 181

Query: 212 STGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVA 264
             G LL+  A   E  + GK     + ++  +   +   L   LG D +++ V A
Sbjct: 182 QKGTLLSDQAENSELTMAGKQFDYSRRMEGMLTQRVQNILQPILGNDRYKAEVSA 236


>gi|218703511|ref|YP_002411030.1| flagellar MS-ring protein [Escherichia coli UMN026]
 gi|293403341|ref|ZP_06647432.1| predicted protein [Escherichia coli FVEC1412]
 gi|298378953|ref|ZP_06988834.1| flagellar M-ring protein FliF [Escherichia coli FVEC1302]
 gi|300898054|ref|ZP_07116423.1| flagellar M-ring protein FliF [Escherichia coli MS 198-1]
 gi|218430608|emb|CAR11474.1| Lateral flagellar M-ring protein (FliF-like) [Escherichia coli
           UMN026]
 gi|291429194|gb|EFF02214.1| predicted protein [Escherichia coli FVEC1412]
 gi|298280066|gb|EFI21570.1| flagellar M-ring protein FliF [Escherichia coli FVEC1302]
 gi|300358232|gb|EFJ74102.1| flagellar M-ring protein FliF [Escherichia coli MS 198-1]
          Length = 548

 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 112/415 (26%), Positives = 198/415 (47%), Gaps = 51/415 (12%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           L +A+  ++  +L+   R +V+      LY + E   V++I   L    + +RI      
Sbjct: 33  LAVAATAIIVSVLWTGNRGYVS------LYGRQENLPVSQIVTVLDGEKLSYRIDPQSGQ 86

Query: 83  ISVPSSMVGKARIHLAAQG----LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           I VP   + K R+ LAA+G    LPS     GYEL DK    G + F+Q +   R+LEGE
Sbjct: 87  ILVPEDALSKTRMTLAAKGVQAILPS-----GYELMDKDEVLGSSQFVQNVRYKRSLEGE 141

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARP--TASVMIR-----AINPSVYKSAEAI 191
           +A++I S+  + +ARVH+ + +  SF  +   P  +ASV++R      +N        AI
Sbjct: 142 LAQSIMSLDAVESARVHLALNEESSF-VVSDEPQNSASVVVRLHYGAKLN---MDQVNAI 197

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            HLV+ ++P L    V+V+D  G LLT    A E       K   I++ IQ +   ++  
Sbjct: 198 MHLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRASVAN 257

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAV 306
            L + +G  N+R +V+ +L++ T    +  Y    K+ R    L  D  +     P S  
Sbjct: 258 VLDSLVGTGNYRVSVMPDLDLSTIDETQEHYGDAPKINREESVLDSDTNQVAMGVPGSL- 316

Query: 307 TVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
               N P V+  ++         P +L    + +   +Y+ + + I   H  + ++RL++
Sbjct: 317 ---SNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHI--QHPGFAVKRLNV 371

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           AVV+N+          A +       A++  +++ A GI+ +RGD +T++ ++F+
Sbjct: 372 AVVLNQ-------NAPALKNWKPEQTAQLTALLNNAAGIDVQRGDNLTLSLLNFV 419


>gi|332756092|gb|EGJ86445.1| flagellar M-ring protein domain protein [Shigella flexneri 4343-70]
 gi|333003272|gb|EGK22818.1| flagellar M-ring protein domain protein [Shigella flexneri K-218]
          Length = 261

 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 122/231 (52%), Gaps = 5/231 (2%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92
           + + +A   +  +P Y  L+  L   D   I   L++ NI +R S+   +I VP+  V +
Sbjct: 33  VAVMVALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGAIEVPADKVHE 92

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
            R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RTI++I  +  A
Sbjct: 93  LRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRTIETIGPVKGA 150

Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVL 210
           RVH+ MP    F +    P+ASV +  +        +  AI HLV++AV  L  G+VT++
Sbjct: 151 RVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAGLPPGNVTLV 210

Query: 211 DSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRS 260
           D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  +
Sbjct: 211 DQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQQRIEAILSPIVGNGNIHA 261


>gi|256376473|ref|YP_003100133.1| flagellar M-ring protein FliF [Actinosynnema mirum DSM 43827]
 gi|255920776|gb|ACU36287.1| flagellar M-ring protein FliF [Actinosynnema mirum DSM 43827]
          Length = 559

 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 102/420 (24%), Positives = 201/420 (47%), Gaps = 32/420 (7%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +L  FK+ T+    + L+  + +L  +        + + P Y  LY  L   D + I   
Sbjct: 13  VLSGFKAFTA---GQKLVAGATVLAVVGAIAFYFLWASKPTYAPLYTSLASKDASAIVDQ 69

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L+ A + + ++D G +I VP   V   R+ ++A  LPS S ++GY L D+      + FM
Sbjct: 70  LTAAGVTYELTDGGQTIMVPQDQVYPMRLKMSAANLPSQS-DTGYALLDQ-QGVTTSEFM 127

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-RAINPSVY 185
           Q++   RA+EGE+  TI++I G+ +A VH+ +P    F    ++PTA+V++      S+ 
Sbjct: 128 QQVGYQRAMEGELGSTIKAIDGVTSASVHLAIPQKDVFSDSDSKPTAAVLVGTGAGKSLS 187

Query: 186 KS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAIQHEI 241
           ++  + I HLV+++V  +    VTV  + GK+L+   A+    +  G      +A +  +
Sbjct: 188 QAQVQTITHLVSSSVEGMSADGVTVAGTDGKVLSTGGADGASASANGDRDDQTKAFEQRL 247

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD------PDSKVERSIRLSKDAQ 295
             ++ + L+  +G D+    V A+L+ D  + +   Y       P S+   +   + D  
Sbjct: 248 STSLQQMLSQVVGQDHAVVQVTADLDYDQTETKSQTYTSGDGTAPLSESSTTESYTGDGG 307

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY--K 353
           ++       +     N    +             ++++   N  +N  S+  T  +   K
Sbjct: 308 QNAAGGVLGSTNGTLNGLEGNTTNGTGGSGNGTYNQEKSTRNNAVN--SVIETRQSAPGK 365

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           + +L +AV++++        ++A  G +D  +AE+ +I S+A  +++ RGDT+ ++SM F
Sbjct: 366 VRKLGVAVLLDQ--------KTA--GAVD--MAEVERIASSAVALDTARGDTLAVSSMPF 413


>gi|34558286|ref|NP_908101.1| flagellar MS-ring protein [Wolinella succinogenes DSM 1740]
 gi|34484005|emb|CAE11001.1| FLAGELLAR BASAL-BODY M-RING PROTEIN FLIF [Wolinella succinogenes]
          Length = 577

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 114/414 (27%), Positives = 205/414 (49%), Gaps = 45/414 (10%)

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L ++ I +++  + ++I +P   V + RI LA+ G+P SS   G+E+FDK   FG T F 
Sbjct: 72  LEQSKIPYKLPKD-NTILIPEEKVYEERIKLASSGIPKSS-KVGFEIFDK-QEFGATDFD 128

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-----AIN 181
           Q++  VRA EGE++RTI+S++ I  A VHI +P    F      PTASV++R     A+ 
Sbjct: 129 QKVKFVRATEGELSRTIESLTPIEKASVHIAIPKDSVFVSKETPPTASVVLRLRPNMALT 188

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLSIVQAIQ 238
           P+       I++LVAAA+  L+  +V +++  G+ L   +     + +    +   Q  +
Sbjct: 189 PA---QVLGIKNLVAAAITRLEPENVRIVNENGEPLGEGDELTTSKEMAAVQMRYKQNFE 245

Query: 239 HEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
             +E  I   LA  + G D   + V AE +   +Q  + ++DP++ V     L    ++ 
Sbjct: 246 RSVEEKIVNILAPIIGGADRVVAKVTAEFDFSQKQSTQELFDPNNVVRSEQTLE---EKR 302

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD------KKEEQSNYEINTKSIATTHDN 351
           E  +P+    V   + ++     P+ + L++ D      K +  +N+EI +K++++    
Sbjct: 303 EGFKPKEIGGVPGAVSNIG----PV-QGLDSQDVRDKYEKSQTTTNFEI-SKTVSSIKGE 356

Query: 352 Y-KLERLSIAVVVNKGRLTEVLGRSADQGK--------IDSYLAEINKIVSAATGINSRR 402
           +  ++RLS AVVV+    T V     +QG          D  + +IN +V  A G +  R
Sbjct: 357 FATIKRLSAAVVVDGKYKTSV----NEQGNEVLEYIPLSDEEMEKINGLVRQAMGFSGTR 412

Query: 403 GDTITITSMDF-LENQLFNSGTVQVSFMDILSRHFATVINALVF-LVGTLLVTF 454
           GD  T+++ +F  ++  +   T    F+  L +     +  L + +VG +L  F
Sbjct: 413 GDEATVSNFEFDAKSAGYAPKTPVERFVQGLEKFMGPFMPMLKYVIVGLILFVF 466


>gi|313683040|ref|YP_004060778.1| flagellar m-ring protein flif [Sulfuricurvum kujiense DSM 16994]
 gi|313155900|gb|ADR34578.1| flagellar M-ring protein FliF [Sulfuricurvum kujiense DSM 16994]
          Length = 572

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 112/384 (29%), Positives = 200/384 (52%), Gaps = 30/384 (7%)

Query: 48  YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           Y  L+ +L   D +++   L +  I +RI    + I VP  +V K RI +A+ G+P    
Sbjct: 54  YQVLFEQLSGEDASKVIEQLEKDKIPYRIPRE-NVIEVPKEVVYKERIAIASLGIPKEG- 111

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
           + G+ELFDK   FG T+F QE+   RALEGE+AR+I S+S +  + V + +P    F + 
Sbjct: 112 HVGFELFDK-QEFGATNFDQEVKFRRALEGELARSIDSLSPVEKSSVSLALPKETLFVEE 170

Query: 168 GARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM 222
              P+ASVM+     R + P   K    I+ LVAAAVP L   +V ++++ G+ L  N+ 
Sbjct: 171 AVPPSASVMVQLYPDRKLTP---KQIRGIKKLVAAAVPKLTPENVALINAEGETLGDND- 226

Query: 223 ERNILGKSLSIVQ----AIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIV 277
           + + +G+  SI Q      + + E  I   LA F+ G D   + V  E +   Q      
Sbjct: 227 DASAMGELSSIQQQYKTKEEKKQEEKIINVLAPFIGGKDRVVAKVTIEYDFSEQSSTSEK 286

Query: 278 YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSN 337
           +DP++ V RS + S+  ++ E + P+    V   + ++   +       E  +K    +N
Sbjct: 287 FDPENVV-RSEQSSE--EKREGAAPQQVGGVPGAVSNIGPVEGLAGGGGEKFEKTTGTTN 343

Query: 338 YEINTKSIATTHDNY-KLERLSIAVVVNKGRL---TEVLGRSADQGKI----DSYLAEIN 389
           YE+ +K+++TT   + +++R++ AVVV+ G+     +  G+  D+ +     ++ +  I+
Sbjct: 344 YEV-SKTVSTTKMEFARIKRMTAAVVVD-GKYEPKKDASGQPTDEIEYIALDETQIQAID 401

Query: 390 KIVSAATGINSRRGDTITITSMDF 413
            +V  + G + +RGD +T+ + +F
Sbjct: 402 ALVKQSIGADEQRGDQVTVRNFEF 425


>gi|260853453|ref|YP_003227344.1| putative lateral flagellar basal-body M-ring and collar protein
           [Escherichia coli O26:H11 str. 11368]
 gi|257752102|dbj|BAI23604.1| predicted lateral flagellar basal-body M-ring and collar protein
           [Escherichia coli O26:H11 str. 11368]
 gi|323158008|gb|EFZ44109.1| flagellar M-ring protein FliF [Escherichia coli EPECa14]
          Length = 548

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 112/415 (26%), Positives = 199/415 (47%), Gaps = 51/415 (12%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           L +A+  ++  +L+   R +V+      LY + E   V++I   L    + +RI      
Sbjct: 33  LAVAATAIIVSVLWTGNRGYVS------LYGRQENLPVSQIVTVLDGEKLTYRIDPQSGQ 86

Query: 83  ISVPSSMVGKARIHLAAQG----LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           I VP   + K R+ LAA+G    LPS     GYEL DK    G + F+Q +   R+LEGE
Sbjct: 87  ILVPEEALSKTRMTLAAKGVQAILPS-----GYELMDKDEVLGSSQFVQNVRYKRSLEGE 141

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARP--TASVMIR-----AINPSVYKSAEAI 191
           +A++I S+  + +ARVH+ + +  SF  +   P  +ASV++R      +N        AI
Sbjct: 142 LAQSIMSLDAVESARVHLALNEESSF-VVSDEPQNSASVVVRLHYGAKLN---MDQVNAI 197

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            HLV+ ++P L    V+V+D  G LLT    A E       K   I++ IQ +   ++  
Sbjct: 198 VHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTHASVAN 257

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAV 306
            L + +G  N+R +V+ +L++ T    +  Y    K+ R    L  D  +     P S  
Sbjct: 258 VLDSLVGSGNYRVSVMPDLDLSTIDETQEHYGDAPKINREESVLDSDTNQVAMGVPGSL- 316

Query: 307 TVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
               N P V+  ++         P +L    + +   +Y+ + + I   H  + ++RL++
Sbjct: 317 ---SNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHI--QHPGFAVKRLNV 371

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           AVV+N+          A +       A++  +++ A GI+++RGD +T++ ++F+
Sbjct: 372 AVVLNQ-------NAPALKNWKPEQTAQLTALLNNAAGIDAQRGDNLTLSLLNFV 419


>gi|307315211|ref|ZP_07594790.1| flagellar M-ring protein FliF [Escherichia coli W]
 gi|331666532|ref|ZP_08367406.1| flagellar M-ring protein FliF [Escherichia coli TA271]
 gi|306905392|gb|EFN35929.1| flagellar M-ring protein FliF [Escherichia coli W]
 gi|315059474|gb|ADT73801.1| Lateral flagellar M-ring protein [Escherichia coli W]
 gi|323181532|gb|EFZ66952.1| flagellar M-ring protein FliF [Escherichia coli 1357]
 gi|323379968|gb|ADX52236.1| flagellar M-ring protein FliF [Escherichia coli KO11]
 gi|331065756|gb|EGI37640.1| flagellar M-ring protein FliF [Escherichia coli TA271]
          Length = 548

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 112/415 (26%), Positives = 199/415 (47%), Gaps = 51/415 (12%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           L +A+  ++  +L+   R +V+      LY + E   V++I   L    + +RI      
Sbjct: 33  LAVAATAIIVSVLWTGNRGYVS------LYGRQENLPVSQIVTVLDGEKLTYRIDPQSGQ 86

Query: 83  ISVPSSMVGKARIHLAAQG----LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           I VP   + K R+ LAA+G    LPS     GYEL DK    G + F+Q +   R+LEGE
Sbjct: 87  ILVPEEALSKTRMTLAAKGVQAILPS-----GYELMDKDEVLGSSQFVQNVRYKRSLEGE 141

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARP--TASVMIR-----AINPSVYKSAEAI 191
           +A++I S+  + +ARVH+ + +  SF  +   P  +ASV++R      +N        AI
Sbjct: 142 LAQSIMSLDAVESARVHLALNEESSF-VVSDEPQNSASVVVRLHYGAKLN---MDQVNAI 197

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            HLV+ ++P L    V+V+D  G LLT    A E       K   I++ IQ +   ++  
Sbjct: 198 VHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTHASVAN 257

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAV 306
            L + +G  N+R +V+ +L++ T    +  Y    K+ R    L  D  +     P S  
Sbjct: 258 VLDSLVGSGNYRVSVMPDLDLSTIDETQEHYGDAPKINREESVLDSDTNQVAMGVPGSL- 316

Query: 307 TVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
               N P V+  ++         P +L    + +   +Y+ + + I   H  + ++RL++
Sbjct: 317 ---SNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHI--QHPGFAVKRLNV 371

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           AVV+N+          A +       A++  +++ A GI+++RGD +T++ ++F+
Sbjct: 372 AVVLNQ-------NAPALKNWKPEQTAQLTALLNNAAGIDAQRGDNLTLSLLNFV 419


>gi|333003033|gb|EGK22587.1| flagellar M-ring protein domain protein [Shigella flexneri VA-6]
          Length = 261

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 122/231 (52%), Gaps = 5/231 (2%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92
           + + +A   +  +P Y  L+  L   D   I   L++ NI +R S+   +I VP+  V +
Sbjct: 33  VAVMVALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGAIEVPADKVHE 92

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
            R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RTI++I  +  A
Sbjct: 93  LRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRTIETIGPVKGA 150

Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVL 210
           RVH+ MP    F +    P+ASV +  +        +  AI HLV++AV  L  G+VT++
Sbjct: 151 RVHLAMPKPSLFVREQKSPSASVTVNLLPSRALDEGQISAIVHLVSSAVAGLPPGNVTLV 210

Query: 211 DSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRS 260
           D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  +
Sbjct: 211 DQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIHA 261


>gi|170021374|ref|YP_001726328.1| flagellar MS-ring protein [Escherichia coli ATCC 8739]
 gi|169756302|gb|ACA79001.1| flagellar M-ring protein FliF [Escherichia coli ATCC 8739]
          Length = 548

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 112/414 (27%), Positives = 197/414 (47%), Gaps = 51/414 (12%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           L +A+  ++  +L+   R +V+      LY + E   V++I   L    + +RI      
Sbjct: 33  LAVAATAIIVSVLWTGNRGYVS------LYGRQENLPVSQIVTVLDGEKLSYRIDPQSGQ 86

Query: 83  ISVPSSMVGKARIHLAAQG----LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           I VP   + K R+ LAA+G    LPS     GYEL DK    G + FMQ +   R+LEGE
Sbjct: 87  ILVPEDELSKTRMTLAAKGVQAILPS-----GYELMDKDEVLGSSQFMQNVRYKRSLEGE 141

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARP--TASVMIR-----AINPSVYKSAEAI 191
           +A++I S+  + +ARVH+ + +  SF  +   P  +ASV++R      +N        AI
Sbjct: 142 LAQSIMSLDAVESARVHLALNEESSF-VVSDEPQNSASVVVRLHYGAKLN---MDQVNAI 197

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            HLV+ ++P L    V+V+D  G LLT    A E       K   I++ IQ +   ++  
Sbjct: 198 VHLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRASVAN 257

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAV 306
            L + +G  N+R +V+ +L++ T    +  Y    K+ R    L  D  +     P S  
Sbjct: 258 VLDSLVGSRNYRVSVMPDLDLSTIDETQEHYGDAPKINREESVLDSDTNQVAMGVPGSL- 316

Query: 307 TVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
               N P V+  ++         P +L    + +   +Y+ + + I   H  + ++RL++
Sbjct: 317 ---SNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHI--QHPGFAVKRLNV 371

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVV+N+          A +        ++  +++ A GI+++RGD +T++ ++F
Sbjct: 372 AVVLNQ-------NAPALKNWKPEQTTQLTALLNNAAGIDAQRGDNLTLSLLNF 418


>gi|118444659|ref|YP_877975.1| flagellar MS-ring protein [Clostridium novyi NT]
 gi|118135115|gb|ABK62159.1| flagellar M-ring protein FliF [Clostridium novyi NT]
          Length = 523

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 120/425 (28%), Positives = 207/425 (48%), Gaps = 47/425 (11%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           L+  FK   S G+     +  V ++  ++++    F+N+  Y  LY  ++ +D   +   
Sbjct: 11  LIDKFKE-LSKGKKIAFSILGVGIISGLIYLIV--FLNTTKYAVLYKDMDPNDAQTVMTK 67

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L+E  +++++ +  SSI VP   V + R+ LA Q    +S + GYE+ +  +SFG+T   
Sbjct: 68  LNEKKVEYKVEN--SSIKVPEEKVSELRLELAPQ---LTSGSKGYEILENADSFGMTDKE 122

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
           +E+    ALEGE+A+ I+S+  +  A+V +VMP  G+F K      ASV I   N     
Sbjct: 123 RELNYKIALEGELAKNIKSLPEVKDAKVLLVMPQEGNFFKQAENAQASVRIE-FNEGKSI 181

Query: 187 SAEAIR---HLVAAAVPNLDMGDVT---VLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240
           S E I+    LV  +V NL   +V    VL+   K LT +++     GK L+ V   Q++
Sbjct: 182 SKEQIKAIVSLVTGSVKNLKKENVKIIGVLNGKTKDLT-DDLFSEEDGKDLTSVTDKQNK 240

Query: 241 IEMNINKA--------LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292
            + N+ K         L    G +  ++AV  +L+ D  +    V+DP++ V RS  + K
Sbjct: 241 YKKNLEKEYVKKIMNILTPKYG-EGVKAAVNVDLDFDASEKTSTVWDPNNVV-RSEEIEK 298

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQS--NYEINTKSIATTHD 350
           D ++S+  +  SA  V+ NM +  + +        N+    E++  NYE+      T   
Sbjct: 299 DTEKSKDGKV-SAGPVDNNMSNTYNNQDG------NSSSTHEKTTRNYEVGKIEQKTVGA 351

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
             K++++S +V +N   L  V     D+ KI+S       +V+ A   +  RGD IT+  
Sbjct: 352 PGKVKKISASVTINDENLNPV-----DKDKINS-------LVAGAISYDENRGDIITVEG 399

Query: 411 MDFLE 415
           + F E
Sbjct: 400 LKFNE 404


>gi|333004041|gb|EGK23575.1| flagellar M-ring protein domain protein [Shigella flexneri K-272]
 gi|333017814|gb|EGK37121.1| flagellar M-ring protein domain protein [Shigella flexneri K-227]
          Length = 261

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 122/231 (52%), Gaps = 5/231 (2%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92
           + + +A   +  +P Y  L+  L   D   I   L++ NI +R S+   +I VP+  V +
Sbjct: 33  VAVMVALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGAIEVPADKVHE 92

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
            R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RTI++I  +  A
Sbjct: 93  LRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRTIETIGPVKGA 150

Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVL 210
           RVH+ MP    F +    P+ASV +  +        +  AI HLV++AV  L  G+VT++
Sbjct: 151 RVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAGLPPGNVTLV 210

Query: 211 DSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRS 260
           D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  +
Sbjct: 211 DQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIHA 261


>gi|59889767|emb|CAH19122.1| Lateral flagellar M-ring protein (FliF-like) [Escherichia coli]
 gi|284920031|emb|CBG33087.1| lateral flagellar M-ring protein (FliF-like) [Escherichia coli 042]
          Length = 548

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 112/415 (26%), Positives = 198/415 (47%), Gaps = 51/415 (12%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           L +A+  ++  +L+   R +V+      LY + E   V++I   L    + +RI      
Sbjct: 33  LAVAATAIIVSVLWTGNRGYVS------LYGRQENLPVSQIVTVLDGEKLSYRIDPQSGQ 86

Query: 83  ISVPSSMVGKARIHLAAQG----LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           I VP   + K R+ LAA+G    LPS     GYEL DK    G + F+Q +   R+LEGE
Sbjct: 87  ILVPEDALSKTRMTLAAKGVQAILPS-----GYELMDKDEVLGSSQFVQNVRYKRSLEGE 141

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARP--TASVMIR-----AINPSVYKSAEAI 191
           +A++I S+  + +ARVH+ + +  SF  +   P  +ASV++R      +N        AI
Sbjct: 142 LAQSIMSLDSVESARVHLALNEESSF-VVSDEPQNSASVVVRLHYGAKLN---MDQVNAI 197

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            HLV+ ++P L    V+V+D  G LLT    A E       K   I++ IQ +   ++  
Sbjct: 198 VHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRASVAN 257

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAV 306
            L + +G  N+R +V+ +L++ T    +  Y    K+ R    L  D  +     P S  
Sbjct: 258 VLDSLVGTGNYRVSVMPDLDLSTIDETQEHYGDAPKINREENVLDSDTNQVAMGVPGSL- 316

Query: 307 TVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
               N P V+  ++         P +L    + +   +Y+ + + I   H  + ++RL++
Sbjct: 317 ---SNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHI--QHPGFAVKRLNV 371

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           AVV+N+          A +       A++  +++ A GI+ +RGD +T++ ++F+
Sbjct: 372 AVVLNQ-------NAPAMKNWKPEQTAQLTALLNNAAGIDVQRGDNLTLSLLNFV 419


>gi|331671787|ref|ZP_08372583.1| flagellar M-ring protein FliF [Escherichia coli TA280]
 gi|331070776|gb|EGI42135.1| flagellar M-ring protein FliF [Escherichia coli TA280]
          Length = 552

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 111/415 (26%), Positives = 199/415 (47%), Gaps = 47/415 (11%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           L +A+  ++  +L+   R +V+      LY + E   V++I   L    + +RI      
Sbjct: 33  LAVAATAIIVSVLWTGNRGYVS------LYGRQENLPVSQIVTVLDGEKLSYRIDPQSGQ 86

Query: 83  ISVPSSMVGKARIHLAAQG----LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           I VP   + K R+ LAA+G    LPS     GYEL DK    G + F+Q +   R+LEGE
Sbjct: 87  ILVPEDELSKTRMTLAAKGVQAILPS-----GYELMDKDEVLGSSQFVQNVRYKRSLEGE 141

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARP--TASVMIR-----AINPSVYKSAEAI 191
           +A++I S+  + +ARVH+ + +  SF  +   P  +ASV++R      +N        AI
Sbjct: 142 LAQSIMSLDAVESARVHLALNEESSF-VVSDEPQNSASVVVRLHYGAKLN---MDQVNAI 197

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            HLV+ ++P L    V+V+D  G LLT    A E       K   I++ IQ +   ++  
Sbjct: 198 VHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRASVAN 257

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAV 306
            L + +G  N+R +V+ +L++ T    +  Y    K+ R    L  D  +     P S  
Sbjct: 258 VLDSLVGTGNYRVSVMPDLDLSTIDETQEHYGDAPKINREESVLDSDTNQVAMGVPGSL- 316

Query: 307 TVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
               N P V+  ++         P +L    + +   +Y+ + + I   H  + ++RL++
Sbjct: 317 ---SNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHI--QHPGFAVKRLNV 371

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           AVV+N+        +     ++    A++  +++ A GI+ +RGD +T++ ++F+
Sbjct: 372 AVVLNQNAPAMKNWKPEQTAQL---TAQLTALLNNAAGIDVQRGDNLTLSLLNFV 423


>gi|167725912|ref|ZP_02409148.1| flagellar MS-ring protein [Burkholderia pseudomallei DM98]
 gi|167905072|ref|ZP_02492277.1| flagellar MS-ring protein [Burkholderia pseudomallei NCTC 13177]
 gi|125657201|gb|ABN48689.1| flagella biosynthesis/type III secretory pathway lipoprotein
           [Burkholderia pseudomallei]
          Length = 531

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 105/380 (27%), Positives = 191/380 (50%), Gaps = 34/380 (8%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
           +Y  L+   E   ++ +   L    I +RI  +   + V  S V +AR+ LAA+G+ ++ 
Sbjct: 34  NYKPLFGAREPVQLDDVVSTLDAQRIPYRIHPDTGQVLVARSDVARARMTLAARGV-TAK 92

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
           +  G E  D+ +  G + F+Q++   R LE E+A++I ++  +  ARVH+ +    SF  
Sbjct: 93  AAPGLEQIDQDDPLGTSQFVQDVRFRRGLESELAQSIATLEPVERARVHLSIAKSSSFVM 152

Query: 167 IGARPTASVMIRAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EM 222
           +    +A+ ++  + P    + E   A+ +LVA +VPNL    V+V+D  G  L+A  ++
Sbjct: 153 MDGDKSAASVVLTLKPGRRLAKEQIAAVINLVAGSVPNLAPAKVSVVDQHGAFLSARVDL 212

Query: 223 ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPD 281
           + ++ G    I    + ++  N+   LA  LG+ NFR +V A +N D  ++ RE      
Sbjct: 213 DGDLTGTD-EIAARFREDVTRNVEDLLAPSLGLGNFRVSVTALVNNDRVEETRE------ 265

Query: 282 SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEE------Q 335
            +   + ++  +A R+E ++   A+ V  ++   S+R V +P S    D   +      Q
Sbjct: 266 -QFGEAPKVMNEATRNEQNRDRVALGVPGSL---SNRPVDVPASEPQADGGTQRAATTRQ 321

Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS--YLAEINKIVS 393
             Y+ N   I       +LE+LS+AVV+N          S  +GK  S   L  I++I+ 
Sbjct: 322 FAYDRNITQI--KRGRGQLEKLSVAVVLNN-------AVSPAKGKPWSPEQLRRIDEILR 372

Query: 394 AATGINSRRGDTITITSMDF 413
           +  GI+ +RGD + ++S+DF
Sbjct: 373 SGLGIDKQRGDQLIVSSLDF 392


>gi|327254536|gb|EGE66152.1| flagellar M-ring protein FliF [Escherichia coli STEC_7v]
          Length = 548

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 111/415 (26%), Positives = 198/415 (47%), Gaps = 51/415 (12%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           L +A+  ++  +L+   R +V+      LY + E   V++I   L    + +RI      
Sbjct: 33  LAVAATAIIVSVLWTGNRGYVS------LYGRQENLPVSQIVTVLDGEKLTYRIDPQSGQ 86

Query: 83  ISVPSSMVGKARIHLAAQG----LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           I VP   + K R+ LAA+G    LPS     GYEL DK    G + FMQ +   R+LEGE
Sbjct: 87  ILVPEDELSKTRMTLAAKGVQAILPS-----GYELMDKDEVLGSSQFMQNVRYKRSLEGE 141

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARP--TASVMIR-----AINPSVYKSAEAI 191
           +A++I S+  + +ARVH+ + +  SF  +   P  +ASV++R      +N        AI
Sbjct: 142 LAQSIMSLDAVESARVHLALNEESSF-VVSDEPQNSASVVVRLHYGAKLN---MDQVNAI 197

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            HLV+ ++P L    V+V+D  G LLT    A E       K   I++ IQ +   ++  
Sbjct: 198 VHLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRASVAN 257

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAV 306
            L + +G  N+R +V+ +L++ T    +  Y    K+ R    L  D  +     P S  
Sbjct: 258 VLDSLVGSGNYRVSVMPDLDLSTIDETQEHYGDAPKINREESVLDSDTNQVAMGVPGSL- 316

Query: 307 TVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
               N P ++  ++         P +L    + +   +Y+ + + I   H  + ++RL++
Sbjct: 317 ---SNRPPIAANQMTNGAEENRSPEALSKHSESKRDYSYDRSVQHI--QHPGFAVKRLNV 371

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           AVV+N+          A +        ++  +++ A GI+++RGD +T++ ++F+
Sbjct: 372 AVVLNQ-------NAPALKNWKPEQTTQLTALLNNAAGIDAQRGDNLTLSLLNFV 419


>gi|260866399|ref|YP_003232801.1| putative lateral flagellar basal-body M-ring and collar protein
           [Escherichia coli O111:H- str. 11128]
 gi|257762755|dbj|BAI34250.1| predicted lateral flagellar basal-body M-ring and collar protein
           [Escherichia coli O111:H- str. 11128]
 gi|323178508|gb|EFZ64086.1| flagellar M-ring protein FliF [Escherichia coli 1180]
          Length = 548

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 112/415 (26%), Positives = 199/415 (47%), Gaps = 51/415 (12%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           L +A+  ++  +L+   R +V+      LY + E   V++I   L    + +RI      
Sbjct: 33  LAVAATAIIVSVLWTGNRGYVS------LYGRQENLPVSQIVTVLDGEKLTYRIDPQSGQ 86

Query: 83  ISVPSSMVGKARIHLAAQG----LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           I VP   + K R+ LAA+G    LPS     GYEL DK    G   F+Q +   R+LEGE
Sbjct: 87  ILVPEEALSKTRMTLAAKGVQAILPS-----GYELMDKDEVLGSRQFVQNVRYKRSLEGE 141

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARP--TASVMIR-----AINPSVYKSAEAI 191
           +A++I S+  + +ARVH+ + +  SF  +   P  +ASV++R      +N        AI
Sbjct: 142 LAQSIMSLDAVESARVHLALNEESSF-VVSDEPQNSASVVVRLHYGAKLN---MDQVNAI 197

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            HLV+ ++P L    V+V+D +G LLT    A E       K   I++ IQ +   ++  
Sbjct: 198 VHLVSGSIPGLHASKVSVVDQSGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTHASVAN 257

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAV 306
            L + +G  N+R +V+ +L++ T    +  Y    K+ R    L  D  +     P S  
Sbjct: 258 VLDSLVGSGNYRVSVMPDLDLSTIDETQEHYGDAPKINREESVLDSDTNQVAMGVPGSL- 316

Query: 307 TVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
               N P V+  ++         P +L    + +   +Y+ + + I   H  + ++RL++
Sbjct: 317 ---SNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHI--QHPGFAVKRLNV 371

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           AVV+N+          A +       A++  +++ A GI+++RGD +T++ ++F+
Sbjct: 372 AVVLNQ-------NAPALKNWKPEQTAQLTALLNNAAGIDAQRGDNLTLSLLNFV 419


>gi|126442789|ref|YP_001061229.1| flagellar MS-ring protein [Burkholderia pseudomallei 668]
 gi|134280829|ref|ZP_01767539.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 305]
 gi|254182909|ref|ZP_04889502.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1655]
 gi|126222280|gb|ABN85785.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 668]
 gi|134247851|gb|EBA47935.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 305]
 gi|184213443|gb|EDU10486.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1655]
          Length = 532

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 105/380 (27%), Positives = 191/380 (50%), Gaps = 34/380 (8%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
           +Y  L+   E   ++ +   L    I +RI  +   + V  S V +AR+ LAA+G+ ++ 
Sbjct: 35  NYKPLFGAREPVQLDDVVSTLDAQRIPYRIHPDTGQVLVARSDVARARMTLAARGV-TAK 93

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
           +  G E  D+ +  G + F+Q++   R LE E+A++I ++  +  ARVH+ +    SF  
Sbjct: 94  AAPGLEQIDQDDPLGTSQFVQDVRFRRGLESELAQSIATLEPVERARVHLSIAKSSSFVM 153

Query: 167 IGARPTASVMIRAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EM 222
           +    +A+ ++  + P    + E   A+ +LVA +VPNL    V+V+D  G  L+A  ++
Sbjct: 154 MDGDKSAASVVLTLKPGRRLAKEQIAAVINLVAGSVPNLAPAKVSVVDQHGAFLSARVDL 213

Query: 223 ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPD 281
           + ++ G    I    + ++  N+   LA  LG+ NFR +V A +N D  ++ RE      
Sbjct: 214 DGDLTGTD-EIAARFREDVTRNVEDLLAPSLGLGNFRVSVTALVNNDRVEETRE------ 266

Query: 282 SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEE------Q 335
            +   + ++  +A R+E ++   A+ V  ++   S+R V +P S    D   +      Q
Sbjct: 267 -QFGEAPKVMNEATRNEQNRDRVALGVPGSL---SNRPVDVPASEPQADGGTQRAATTRQ 322

Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS--YLAEINKIVS 393
             Y+ N   I       +LE+LS+AVV+N          S  +GK  S   L  I++I+ 
Sbjct: 323 FAYDRNITQI--KRGRGQLEKLSVAVVLNN-------AVSPAKGKPWSPEQLRRIDEILR 373

Query: 394 AATGINSRRGDTITITSMDF 413
           +  GI+ +RGD + ++S+DF
Sbjct: 374 SGLGIDKQRGDQLIVSSLDF 393


>gi|90415352|ref|ZP_01223286.1| flagellar protein [marine gamma proteobacterium HTCC2207]
 gi|90332675|gb|EAS47845.1| flagellar protein [marine gamma proteobacterium HTCC2207]
          Length = 599

 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 124/464 (26%), Positives = 203/464 (43%), Gaps = 41/464 (8%)

Query: 21  RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80
           R  + A +  + + +F+ A  ++  P Y  +Y  L  SD      AL+ A+   RI  + 
Sbjct: 57  RKAMPAIIAFLSVAVFLIAYSWMQDPVYRTVYPGLSESDRQAAFEALAGADFKARIDSST 116

Query: 81  SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140
             + VP S   +ARI LAA+GLP   +  G        S   + FM+++  V A+E E+A
Sbjct: 117 GELKVPDSRYHEARIFLAARGLPQEGTTGGISGLSDEASMTSSQFMEQVRYVSAMEQELA 176

Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAA 198
           R+I  I+ I +ARVH+  P    F +      ASV++      +   +  EAI H+V+++
Sbjct: 177 RSITQINTIRSARVHLASPKQSVFVRNRTPAKASVVVSPYPGRLVSRSQVEAITHMVSSS 236

Query: 199 VPNLDMGDVTVLDSTGKLLT-ANEMERNILGKS-LSIVQAIQHEIEMNINKALAAFLGVD 256
           VP L   DV V+D  GKLLT AN      L  + +   Q ++      I+  L   +G+ 
Sbjct: 237 VPYLAAEDVVVVDQRGKLLTDANNFASMQLNSAQMEHKQRLEETYRNRIDALLMPVVGMG 296

Query: 257 NFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET-SQPESAVTVEQNMPHV 315
           N R+ V  +++   ++     YD ++   ++        RSE  S  + AV+  + +P  
Sbjct: 297 NVRAEVDIQVDYTEEESTYEEYDGNNNGPKA--------RSEVLSLDQDAVSSAEGIPGA 348

Query: 316 SDRKVP----------LPRSLEN----TDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
           +   VP          L  S E+    T       NYE++            +ER+S+AV
Sbjct: 349 TTNTVPLNATAILNGQLDGSAEDGGLRTSSSTTTRNYEMDRTVRHVKRQGGSVERISVAV 408

Query: 362 VVNKGRLTEVLGRSADQGKIDSY----LAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           V+N+    E  G   + G+   +    L   + +V    G +  RGD +TI S  F    
Sbjct: 409 VINEPVAQE--GGVNEAGESKGFSELELERFSDLVKGVVGFDGERGDVVTIVSATFETPV 466

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461
            F S        DI       VI+ +  L   ++  F+ L  +R
Sbjct: 467 PFKS--------DIAWYENGQVISGIKTLGAAIMFLFILLSVVR 502


>gi|311085815|gb|ADP65897.1| flagellar MS-ring protein [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
          Length = 489

 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 103/385 (26%), Positives = 190/385 (49%), Gaps = 34/385 (8%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110
           +Y  L   D   I   L+E  I ++ +D+   I VP   V + R+ LA   LP   S  G
Sbjct: 1   MYNHLSNEDSGSIINELNEMKIPYQFTDSDGPILVPKDKVYEIRLRLAENNLPRGGS-IG 59

Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170
           +EL DK   FG++ + ++I   RALEGE+ARTI+ I+ +  AR+HI       F +   +
Sbjct: 60  FELLDK-EKFGISQYNEQINYHRALEGELARTIKKINSVKNARIHIAFSKSSLFLQDKKK 118

Query: 171 PTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN 225
            +AS+++     R +N        AI HL+++++ +L + ++T++D +GKLL    +E +
Sbjct: 119 SSASIILELQPGRNLNTG---QINAIMHLISSSISDLPVENITIVDQSGKLLNQTSVEYD 175

Query: 226 ILGKS-LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV 284
            +  S     + I+      I   L   +G+ N  + V A+++ + Q+  +  Y P+S  
Sbjct: 176 QVNDSQFKYTEEIETRYRNRIKNILEPLVGIGNIYAQVTAQIDFNAQEKTQEKYSPNSDH 235

Query: 285 E-RSIR-----LSKDAQRSETSQPESAVTVEQNMPHVS-DRKVPLPRSLENT----DKK- 332
           + +SIR     +  + ++S   Q E+ + +  +  HV  +  +   ++L+N     D K 
Sbjct: 236 KNQSIRSHQIIIHNEIEKSNI-QEETPIPLSNSNNHVYFNNNIKNSKNLKNNYIPVDSKI 294

Query: 333 --EEQSNYEINTKSIATTHDNYKLERLSIAVVVN--KGRLTEVLGRSADQGKIDSYLAEI 388
             +   NYE+N     T  +  +++RLS AV+VN  K +  + +  S  +      +  I
Sbjct: 295 NRDNTVNYELNHSVSHTKMNIGEIKRLSAAVIVNFSKDKNGKFVPLSTQK------IKNI 348

Query: 389 NKIVSAATGINSRRGDTITITSMDF 413
             ++  A G +  RGD++ + +  F
Sbjct: 349 EHLIREAIGYSKARGDSVHLVNASF 373


>gi|300817286|ref|ZP_07097504.1| flagellar M-ring protein FliF [Escherichia coli MS 107-1]
 gi|300530262|gb|EFK51324.1| flagellar M-ring protein FliF [Escherichia coli MS 107-1]
          Length = 548

 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 111/414 (26%), Positives = 197/414 (47%), Gaps = 51/414 (12%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           L +A+  ++  +L+   R +V+      LY + E   V++I   L    + +RI      
Sbjct: 33  LAVAATAIIVSVLWTGNRGYVS------LYGRQENLPVSQIVTVLDGEKLTYRIDPQSGQ 86

Query: 83  ISVPSSMVGKARIHLAAQG----LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           I VP   + K R+ LAA+G    LPS     GYEL DK    G + F+Q +   R+LEGE
Sbjct: 87  ILVPEEALSKTRMTLAAKGVQAILPS-----GYELMDKDEVLGSSQFVQNVRYKRSLEGE 141

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARP--TASVMIR-----AINPSVYKSAEAI 191
           +A++I S+  + +ARVH+ + +  SF  +   P  +ASV++R      +N        AI
Sbjct: 142 LAQSIMSLDAVESARVHLALNEESSF-VVSDEPQNSASVVVRMHYGAKLN---MDQVNAI 197

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            HLV+ ++P L    V+V+D  G LLT    A E       K   I++ IQ +   ++  
Sbjct: 198 VHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRASVAN 257

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAV 306
            L + +G  N+R +V+ +L++ T    +  Y    K+ R    L  D  +     P S  
Sbjct: 258 VLDSLVGTGNYRVSVMPDLDLSTIDETQEHYGDAPKINREESVLDSDTNQVAMGVPGSL- 316

Query: 307 TVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
               N P V+  ++         P +L    + +   +Y+ + + I   H  + ++RL++
Sbjct: 317 ---SNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHI--QHPGFAVKRLNV 371

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVV+N+          A +        ++  +++ A GI+++RGD +T++ ++F
Sbjct: 372 AVVLNQ-------NAPALKNWKPEQTTQLTALLNNAAGIDAQRGDNLTLSLLNF 418


>gi|254522751|ref|ZP_05134806.1| flagellar M-ring protein FliF [Stenotrophomonas sp. SKA14]
 gi|219720342|gb|EED38867.1| flagellar M-ring protein FliF [Stenotrophomonas sp. SKA14]
          Length = 547

 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 134/550 (24%), Positives = 248/550 (45%), Gaps = 32/550 (5%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
           Q+F    SL  TR L L ++I V +   ++  F+   P    LY  L+       +  L 
Sbjct: 17  QWFDRLQSLQITRRLGLMAMIAVAVAAGLSVFFWSQKPGMVPLYTGLDQKATAEATDLLR 76

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
            A I F +      I+VP   +  AR+ LA  GL + S   G+EL ++   FG++ F++ 
Sbjct: 77  AAQIPFALDPATGGITVPEKNLHDARLKLAGSGL-TDSGKLGFELMERDPGFGVSQFVES 135

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI--RAINPSVYK 186
                ALE E++RTI ++  +  +RVH+ +P   +F +     +ASV +  R        
Sbjct: 136 ARYQHALETELSRTINTLRPVRDSRVHLAIPKPSAFTRQRDVASASVTLELRGGQQLERS 195

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN-- 244
             +AI H+VAA++P+L    VTV+D +G++L+ ++        +    Q  + E   N  
Sbjct: 196 QVDAIVHMVAASIPDLAPERVTVVDQSGRMLSVSDPNSEAAVNAAQFEQVRRQETSFNQR 255

Query: 245 INKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           I + L    G       V  +++   T++ RE+ Y+ + +  RS ++S+++  + T  P+
Sbjct: 256 IRELLEPMTGPGRVNPEVSVDMDFSVTEEAREL-YNGEPQKLRSEQMSENS--TTTPGPQ 312

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
                  N P          ++   + K   + NYE++     T     +++R+S+AV+V
Sbjct: 313 GVPGATSNSPPGQQAAPATAQAPTESSKNATR-NYELDRTLQHTRQPAGRIKRVSVAVLV 371

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           +        G+ A Q    + L  +  +V  A G N+ RGDT+++ +  F+ +     G 
Sbjct: 372 DNVPRAGANGKVAPQPLSAAELTRVEALVKQAVGFNAERGDTVSVMNAPFVRDTTPVEGP 431

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSP 482
              ++ ++   H     +A   L+G ++V  L    LR  L  I   KK +   +  L P
Sbjct: 432 ---AWWELPWVH-----DAGRMLLGAVVVLALLFGVLRPALRAITGQKKND---EQALEP 480

Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFS--HSRNLQSRINSYVSKQSDLRLL-HMIEINE 539
                     L+ +D + L +   D  S      L   ++SY  +   LR+    ++ + 
Sbjct: 481 ----HTADVQLVDDDGMPLPALGADRASLGGPDALALPVDSYEER---LRMAREAVKTDS 533

Query: 540 ERFAKILRKW 549
           +R A++++ W
Sbjct: 534 KRVAQVVKGW 543


>gi|154174065|ref|YP_001408875.1| flagellar MS-ring protein [Campylobacter curvus 525.92]
 gi|112803763|gb|EAU01107.1| flagellar M-ring protein FliF [Campylobacter curvus 525.92]
          Length = 567

 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 110/385 (28%), Positives = 190/385 (49%), Gaps = 32/385 (8%)

Query: 48  YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           Y  L+  +  +D   I   L++ ++ +++++ G+ I VP+  V K RI +A  G+P  S 
Sbjct: 53  YSVLFENISPNDSALIIDQLNKDSVSYKLANEGT-ILVPTGDVYKERIAVATLGIPKESK 111

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
             G+E+FDK   FG T   Q +   RALEGE+ARTI+S+S I  A V I +P    F + 
Sbjct: 112 -IGFEIFDK-QEFGSTDAEQRVKFQRALEGELARTIESLSSIQKATVRIAIPKESVFTER 169

Query: 168 GARPTASVMIRAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEM 222
            + PTAS+++  + P V  SA+    I++LVAAAV NL+  +V +++  G  L     E 
Sbjct: 170 QSPPTASIVVE-LKPGVSLSAKQIFGIKNLVAAAVTNLNTENVKIVNQDGVALGEEDGEF 228

Query: 223 ERNILGKSLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPD 281
           + +++ + +   +  +   E  I   LA  + G D   + V  + + D +  +   YDP+
Sbjct: 229 DSDMIAQQIRYKREFETNYEQKIINVLAPIVGGTDRVVAKVNIDFDFDKKDSQSETYDPN 288

Query: 282 SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV---SDRKVPLPRSLENTDKKEEQSNY 338
           + V     + +  Q S  ++ +       N+  V   SD  +      E  +K  +Q+NY
Sbjct: 289 NVVRSESNIEEKRQGSAPNEIQGVPGAVSNIGPVQGLSDSNIK-----EQYNKSSQQTNY 343

Query: 339 EINTKSIATTHDNYKLERLSIAVVVN---KGRLTEVLGRSAD-------QGKIDSYLAEI 388
           EI+ K          + R+S AVVV+   + +  E    + D       Q + DS    I
Sbjct: 344 EISKKITNIKGQFASIVRVSAAVVVDGLYQPKKDEAGNPTGDIEYVALTQAQKDS----I 399

Query: 389 NKIVSAATGINSRRGDTITITSMDF 413
             ++  A G +++RGD +T+ + +F
Sbjct: 400 TNLIKQAIGYSAQRGDEVTLDNFEF 424


>gi|77463624|ref|YP_353128.1| flagellar FliF M-ring protein [Rhodobacter sphaeroides 2.4.1]
 gi|77388042|gb|ABA79227.1| Flagellar FliF M-ring protein [Rhodobacter sphaeroides 2.4.1]
          Length = 570

 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 118/442 (26%), Positives = 201/442 (45%), Gaps = 48/442 (10%)

Query: 2   AILDQLLQFF-KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
            +++Q+ +F  + G       ILILA  +L      +A    +  P    LY  L  ++ 
Sbjct: 23  GMVEQIRRFGDQPGLRRAMPAILILAVTVLA-----LAGWILLREPARVTLYPGLPEAEK 77

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            R+  +L+   I   I +    ++VP +   +AR+ LAAQGLP    +    L D     
Sbjct: 78  ARVIDSLTGGGIAAVIDERTGEVAVPGADYHRARMLLAAQGLPQGLPDGNALLSDL--PM 135

Query: 121 GLTSFMQEITRVR-ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           G TS   E  R+R A E ++AR+I  IS + AARVH+ +P+  +F +    P ASV ++ 
Sbjct: 136 G-TSKSVETARLRQAQELDLARSITEISAVSAARVHLALPERSAFLRESQPPRASVFLQI 194

Query: 180 INPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI 237
           +       A  EAI +LV+++VP +   DVTV+D  G+LL+    +  +L       + +
Sbjct: 195 VPGRTLDGAQVEAIVNLVSSSVPGMARQDVTVVDQMGRLLSRGSDDPAVLLND----RQL 250

Query: 238 QHEIEMN------INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
           QH +++       I   L    G  N    V  +++   Q+IRE   DPD    R+  L+
Sbjct: 251 QHRVQLETLYRNRIESLLTPIAGPGNLAVQVTIDMDFTRQEIREEQVDPD----RTALLA 306

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE---------------NTDKKEEQS 336
           + +Q  ET+ P++     + +P       P   +LE                +  +    
Sbjct: 307 EQSQIEETADPQA-----RGIPGAVSNSPPPEAALEAGAPPTAAGEAATPMRSRSQNSTR 361

Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL--AEINKIVSA 394
           N+E++ K   T     ++ R+S AVVV           +A    +      A++ ++  +
Sbjct: 362 NFEVSRKVETTLPATARIARVSAAVVVRAQPQPAATDPAAPPPPLLPEALKADLERLTRS 421

Query: 395 ATGINSRRGDTITITSMDFLEN 416
           A G ++ RGD +TIT+  FL+ 
Sbjct: 422 AVGFDADRGDVVTITAQPFLDT 443


>gi|323171047|gb|EFZ56696.1| flagellar M-ring protein FliF [Escherichia coli LT-68]
          Length = 548

 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 109/411 (26%), Positives = 199/411 (48%), Gaps = 43/411 (10%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           L +A+  ++  +L+   R +V+      LY + E   V++I   L    + +RI      
Sbjct: 33  LAVAATAIIVSVLWTGNRGYVS------LYGRQENLPVSQIVTVLDGEKLSYRIDPQSGQ 86

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP   + K R+ LAA+G+  +   SGY+L DK    G + F+Q +   R+LEGE+A++
Sbjct: 87  ILVPEEALSKTRMTLAAKGV-QAILPSGYDLMDKDEVLGSSQFVQNVRYKRSLEGELAQS 145

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARP--TASVMIR-----AINPSVYKSAEAIRHLV 195
           I S+  + +ARVH+ + +  SF  +   P  +ASV++R      +N        AI HLV
Sbjct: 146 IMSLDAVESARVHLALNEESSF-VVSDEPQNSASVVVRLHYGAKLN---MDQVNAIVHLV 201

Query: 196 AAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINKALAA 251
           + ++P L    V+V+D  G LLT    A E       K   I++ IQ +   ++   L +
Sbjct: 202 SGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRASVANVLDS 261

Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQ 310
            +G  N+R +V+ +L++ T    +  Y    K+ R    L  D  +     P S      
Sbjct: 262 LVGSGNYRVSVMPDLDLSTIDETQEHYGDAPKINREESVLDSDTNQVAMGVPGSL----S 317

Query: 311 NMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
           N P V+  ++         P +L    + +   +Y+ + + I   H  + ++RL++AVV+
Sbjct: 318 NRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHI--QHPGFAVKRLNVAVVL 375

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           N+          A +       A++  +++ A GI+++RGD +T++ ++F+
Sbjct: 376 NQ-------NAPALKNWKPEQTAQLTALLNNAAGIDAQRGDNLTLSLLNFV 419


>gi|323975944|gb|EGB71038.1| flagellar M-ring protein FliF [Escherichia coli TW10509]
          Length = 548

 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 108/411 (26%), Positives = 199/411 (48%), Gaps = 43/411 (10%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           L +A+  ++  +L+   R +V+      LY + E   V++I   L    + +RI      
Sbjct: 33  LAVAATAIIVSVLWTGNRGYVS------LYGRQENLPVSQIVTVLDGEKLTYRIDPQSGQ 86

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP   + K R+ LAA+G+  +   SGYEL DK    G + F+Q +   R+LEGE+A++
Sbjct: 87  ILVPEDELSKTRMTLAAKGV-QAILPSGYELMDKDEMLGSSQFVQNVRYKRSLEGELAQS 145

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARP--TASVMIR-----AINPSVYKSAEAIRHLV 195
           I S+  + +ARVH+ + +  SF  +   P  +ASV++R      +N        AI HLV
Sbjct: 146 IMSLDAVESARVHLALNEESSF-VVSDEPQNSASVVVRLHYGAKLN---MDQVNAIVHLV 201

Query: 196 AAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINKALAA 251
           + ++P L    V+V+D  G LLT    A E       K   I++ IQ +   ++   L +
Sbjct: 202 SGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRASVANVLDS 261

Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQ 310
            +G+ N+R +V+ +L++ T    +  Y    K+ R    L  D  +     P S      
Sbjct: 262 LVGMGNYRVSVMPDLDLSTIDETQEHYGDAPKINREESVLDSDTNQVAMGVPGSL----S 317

Query: 311 NMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
           N P ++  ++         P +L    + +   +Y+ + + I   H  + ++RL++AVV+
Sbjct: 318 NRPPIAANQMTNGAEENRSPEALSKHSESKRDYSYDRSVQHI--QHPGFAVKRLNVAVVL 375

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           N+          A +        ++  +++ A GI+++RGD +T++ ++F+
Sbjct: 376 NQ-------NAPALKNWKPEQTTQLTALLNNAAGIDAQRGDNLTLSLLNFV 419


>gi|227329938|ref|ZP_03833962.1| flagellar MS-ring protein [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 574

 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 140/264 (53%), Gaps = 11/264 (4%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  LY  +   D   I   L++ NI +R ++NG +I +P++ V + R+ LA  
Sbjct: 46  LWAKGPDYRVLYSNINDRDGGAIVSELTKLNIPYRFAENGGAIMIPAANVYETRLRLAQL 105

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F ++I   RALEGE++RTI+++  +  ARVH+ +P 
Sbjct: 106 GLPKGGA-VGFELLDQ-EKFGISQFSEQINYQRALEGELSRTIETLGPVQNARVHLAIPK 163

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    P++SV +     RA++     S   I ++V+++V  L   +VTV+D TG+
Sbjct: 164 PSLFVREQKAPSSSVTLTLQPGRALDEGQINS---IVYMVSSSVAGLPPDNVTVVDQTGR 220

Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT A    R++    L     ++   +  I   +A  +G+ N  + V A+++   ++  
Sbjct: 221 LLTQAGGSGRDLNAAQLKYSNEVEAMYQRRIESIIAPMVGMGNVHAQVTAQIDFSAREQT 280

Query: 275 EIVYDPDSKVERSIRLSKDAQRSE 298
           +  Y P+   +++   S+   +SE
Sbjct: 281 DEQYQPNQPPDKAAVRSQQTSQSE 304


>gi|118475241|ref|YP_891471.1| flagellar MS-ring protein [Campylobacter fetus subsp. fetus 82-40]
 gi|118414467|gb|ABK82887.1| flagellar M-ring protein FliF [Campylobacter fetus subsp. fetus
           82-40]
          Length = 568

 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 114/446 (25%), Positives = 205/446 (45%), Gaps = 47/446 (10%)

Query: 29  ILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSS 88
            LV + L+ ++        Y  L+  L  +D  +I   L +  + +++++ G+ I VP+ 
Sbjct: 35  FLVFLSLYKSSSSGSEYDGYSILFRNLNPADSAQIIAQLEKDGVTYKLANEGT-ILVPTK 93

Query: 89  MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISG 148
            V K RI +A+ G+     N G+E+FDK   FG T   Q +   RA++GE+++TI+ +  
Sbjct: 94  SVYKERIAVASLGIMKDGKN-GFEIFDK-QDFGATDNEQRVKFQRAIQGELSKTIEGLEP 151

Query: 149 IVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGD 206
           I  A V+I  P    F +    PTASV+++  +      K  + I+ +VA +V NL   D
Sbjct: 152 IEKATVYIAFPKDSVFTERQVPPTASVVVKIKDGEKLNRKQIDGIKRIVAGSVTNLKAED 211

Query: 207 VTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVV 263
           V ++   G  +  +E  +E  ++   +   +  ++  E  I   +  F  G D   + V 
Sbjct: 212 VKIVTQDGVAVGDDEIALESELVASQIKYKKEFENTYEQKIIDMIGKFTGGRDKVTAKVS 271

Query: 264 AELNMDTQQIREIVYDPDS--KVERSIRLSKDAQRSETSQPESAVTVEQNMPHVS----- 316
            E +   +  +  +YDP+S  + E++I      ++ E  QP+    V   + ++      
Sbjct: 272 IEFDFSVKDSQSEIYDPNSVIRSEQNIE-----EKREGKQPKEVGGVPGAVSNIGPVEGL 326

Query: 317 DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA 376
           D+  P     +N       +NYEI+ K I        ++R++ AVVV+        G+  
Sbjct: 327 DQNKPDELYTKNV----ANTNYEISKKIIKVKDQYATIKRVTAAVVVD--------GKYE 374

Query: 377 DQGKIDSYLA-----------EINKI---VSAATGINSRRGDTITITSMDFLENQLFNSG 422
            + K D  L+           EINKI   V    G NS RGD +T+++ +F +    N+ 
Sbjct: 375 REKKEDGSLSDTIAYVPLSEDEINKIKSLVEQTIGYNSTRGDEVTVSNFEFKKAGNLNAN 434

Query: 423 TVQVS-FMDILSRHFATVINALVFLV 447
           T ++  F D   +    +I  L+ L+
Sbjct: 435 TTKIGIFYDSYLKPLTPIIKYLIVLL 460


>gi|330505661|ref|YP_004382530.1| flagellar MS-ring protein [Pseudomonas mendocina NK-01]
 gi|328919947|gb|AEB60778.1| flagellar MS-ring protein [Pseudomonas mendocina NK-01]
          Length = 560

 Score =  120 bits (302), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 112/424 (26%), Positives = 197/424 (46%), Gaps = 48/424 (11%)

Query: 22  ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81
           + ++A+++ V ++ ++    + +   +  LY   E      +   L    I++R+     
Sbjct: 25  LAVIAALLAVGVVFYL----WRDQGSFRPLYGAGEAYPAAEVMQVLDGDAINYRLHPQSG 80

Query: 82  SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
            + V    +G+AR+ LAA+G+      +GYELFDK    G + F+Q++   R+LEGE+AR
Sbjct: 81  QVLVREDQLGRARMLLAAKGV-QVKVPAGYELFDKDEPLGTSQFVQDVRLKRSLEGELAR 139

Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPT--ASVMIRAINPSVYKSAE---AIRHLVA 196
           T+ ++ G+  ARVH+ + +  SF  +G R    ASVM++ + P    + E   AI +LVA
Sbjct: 140 TVMALKGVEGARVHLALQESSSF-VVGKREPGKASVMLQ-LAPGYKLTPEQVSAIVNLVA 197

Query: 197 AAVPNLDMGDVTVLDSTGKLLTANEMERNI--LG---KSLSIVQAIQHEIEMNINKALAA 251
            +VP L+ G+V V+D  G LL+     R I  LG   ++  +V   Q +   N    LA 
Sbjct: 198 GSVPQLEAGNVQVVDQYGALLS-----RGIDTLGGPVQNWQVVDDYQSKAVANAEAVLAP 252

Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311
            LG  N+R +V A+++   ++     Y        S RL  +  R E+   + A+ V  +
Sbjct: 253 VLGGGNYRISVSADIDFSQKEETFQAYG------ESPRLRNEVVRDESVLDQLALGVPGS 306

Query: 312 M-------PHVSDRKVPLPRSLENTD------KKEEQSNYEINTKSIATTHDNYKLERLS 358
           +          ++++       EN +      +KE     + +       H  + L + S
Sbjct: 307 LANRPPQPAPPANQQAQAGAQGENANQAATSLRKESNRQLDYDQSITHVKHAPFSLRQQS 366

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           IAVV+N     E        G       E+  +V +A G N  RGD +T++   F +  +
Sbjct: 367 IAVVLNAAVAPE-------GGWTPEAREELAAMVKSAVGFNQARGDLLTLSVFPFTDAGI 419

Query: 419 FNSG 422
             +G
Sbjct: 420 GGAG 423


>gi|301646796|ref|ZP_07246650.1| flagellar M-ring protein FliF [Escherichia coli MS 146-1]
 gi|307136844|ref|ZP_07496200.1| flagellar MS-ring protein [Escherichia coli H736]
 gi|331640699|ref|ZP_08341846.1| flagellar M-ring protein FliF [Escherichia coli H736]
 gi|301075031|gb|EFK89837.1| flagellar M-ring protein FliF [Escherichia coli MS 146-1]
 gi|315616841|gb|EFU97458.1| flagellar M-ring protein FliF [Escherichia coli 3431]
 gi|331040073|gb|EGI12281.1| flagellar M-ring protein FliF [Escherichia coli H736]
          Length = 548

 Score =  120 bits (302), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 111/414 (26%), Positives = 197/414 (47%), Gaps = 51/414 (12%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           L +A+  ++  +L+   R +V+      LY + E   V++I   L    + +RI      
Sbjct: 33  LAVAATAIIVSVLWTGNRGYVS------LYGRQENLPVSQIVTVLDGEKLSYRIDPQSGQ 86

Query: 83  ISVPSSMVGKARIHLAAQG----LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           I VP   + K R+ LAA+G    LPS     GYEL DK    G + F+Q +   R+LEGE
Sbjct: 87  ILVPEDELSKTRMTLAAKGVQAILPS-----GYELMDKDEVLGSSQFVQNVRYKRSLEGE 141

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARP--TASVMIR-----AINPSVYKSAEAI 191
           +A++I S+  + +ARVH+ + +  SF  +   P  +ASV++R      +N        AI
Sbjct: 142 LAQSIMSLDAVESARVHLALNEESSF-VVSDEPQNSASVVVRLHYGAKLN---MDQVNAI 197

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            HLV+ ++P L    V+V+D  G LLT    A E       K   I++ IQ +   ++  
Sbjct: 198 VHLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRASVAN 257

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAV 306
            L + +G  N+R +V+ +L++ T    +  Y    K+ R    L  D  +     P S  
Sbjct: 258 VLDSLVGSGNYRVSVMPDLDLSTIDETQEHYGDAPKINREESVLDSDTNQVAMGVPGSL- 316

Query: 307 TVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
               N P V+  ++         P +L    + +   +Y+ + + I   H  + ++RL++
Sbjct: 317 ---SNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHI--QHPGFAVKRLNV 371

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           AVV+N+          A +        ++  +++ A GI+++RGD +T++ ++F
Sbjct: 372 AVVLNQ-------NAPALKNWKPEQTTQLTALLNNAAGIDAQRGDNLTLSLLNF 418


>gi|227112541|ref|ZP_03826197.1| flagellar MS-ring protein [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 574

 Score =  120 bits (302), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 140/264 (53%), Gaps = 11/264 (4%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  LY  +   D   I   L++ NI +R ++NG +I +P++ V + R+ LA  
Sbjct: 46  LWAKGPDYRVLYSNINDRDGGAIVGELTKLNIPYRFAENGGAIMIPAANVYETRLRLAQL 105

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F ++I   RALEGE++RTI+++  +  ARVH+ +P 
Sbjct: 106 GLPKGGA-VGFELLDQ-EKFGISQFSEQINYQRALEGELSRTIETLGPVQNARVHLAIPK 163

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    P++SV +     RA++     S   I ++V+++V  L   +VTV+D TG+
Sbjct: 164 PSLFVREQKAPSSSVTLTLQPGRALDEGQINS---IVYMVSSSVAGLPPDNVTVVDQTGR 220

Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT A    R++    L     ++   +  I   +A  +G+ N  + V A+++   ++  
Sbjct: 221 LLTQAGGSGRDLNAAQLKYSNEVEAMYQRRIESIIAPMVGMGNVHAQVTAQIDFSAREQT 280

Query: 275 EIVYDPDSKVERSIRLSKDAQRSE 298
           +  Y P+   +++   S+   +SE
Sbjct: 281 DEQYQPNQPPDKAAVRSQQTSQSE 304


>gi|300936110|ref|ZP_07151050.1| flagellar M-ring protein FliF [Escherichia coli MS 21-1]
 gi|300458730|gb|EFK22223.1| flagellar M-ring protein FliF [Escherichia coli MS 21-1]
          Length = 551

 Score =  120 bits (302), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 112/412 (27%), Positives = 197/412 (47%), Gaps = 42/412 (10%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           L +A+  ++  +L+   R +V+      LY + E   V++I   L    + +RI      
Sbjct: 33  LAVAATAIIVSVLWTGNRGYVS------LYGRQENLPVSQIVTVLDGEKLSYRIDPQSGQ 86

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP   + K R+ LAA+G+  +   SGYEL DK    G + F+Q +   R+LEGE+A++
Sbjct: 87  ILVPEDELSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSSQFVQNVRYKRSLEGELAQS 145

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARP--TASVMIR-----AINPSVYKSAEAIRHLV 195
           I S+  + +ARVH+ + +  SF  +   P  +ASV++R      +N        AI HLV
Sbjct: 146 IMSLDAVESARVHLALNEESSF-VVSDEPQNSASVVVRLHYGAKLN---MDQVNAIVHLV 201

Query: 196 AAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINKALAA 251
           + ++P L    V+V+D  G LLT    A E       K   I++ IQ +   ++   L +
Sbjct: 202 SGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRASVANVLDS 261

Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQ 310
            +G  N+R +V+ +L++      +  Y    K+ R    L  D  +     P S      
Sbjct: 262 LVGSGNYRVSVMPDLDLSNIDETQEHYGDAPKINREENVLDSDTNQVAMGVPGSL----S 317

Query: 311 NMPHVSDRKV---PLP----RSLENTDK-KEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
           N P V+  +V    +P    RS E   K  E + +Y  +       H  + ++RL++AVV
Sbjct: 318 NRPPVAPNQVTNGAMPADENRSPEALSKHSESKRDYSYDRSVQHIQHPGFTVKRLNVAVV 377

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           +N+          A +        ++  +++ A GI+++RGD +T++ ++F+
Sbjct: 378 LNQ-------NAPALKNWKPEQTTQLTALLNNAAGIDAQRGDNLTLSLLNFV 422


>gi|222824351|ref|YP_002575925.1| flagellar MS-ring protein FliF [Campylobacter lari RM2100]
 gi|222539572|gb|ACM64673.1| flagellar MS-ring protein FliF [Campylobacter lari RM2100]
          Length = 561

 Score =  120 bits (300), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 134/480 (27%), Positives = 229/480 (47%), Gaps = 45/480 (9%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIM-----LFMAARFFVNSPHYDNLYVKLEV 57
           IL Q+ Q +++  SL R RI+I AS+++V        LF +     +   Y  L+     
Sbjct: 6   ILHQVGQLYQN-LSL-RQRIIIAASIVVVVGFLVFLTLFRSGSTVASEAGYSVLFENANT 63

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
           SD   I   L ++ + + + + G+ I VP+  V K R+ +A+ GL    +  G+ELFDK 
Sbjct: 64  SDSAMIVTQLEKSGVPYILRNEGT-ILVPNDQVYKQRLAIASAGLLPKDNKVGFELFDK- 121

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
             FG T   Q++   RALEGE+ARTI+S+  I +A VHI       F +    PTASV +
Sbjct: 122 QEFGATEAEQKVKYQRALEGELARTIESLEPIHSATVHIAFAKDTLFTQQQVPPTASVAL 181

Query: 178 RAINPSV---YKSAEAIRHLVAAAVPNLDMGDVTVLDSTG-KLLTANEMERNILGKSLSI 233
             I   +    K    I++L+A++V  L   +V ++D  G  L      E +++   +  
Sbjct: 182 -TIKEGLKLNKKQIMGIKNLIASSVTKLTPENVKIMDQKGIPLDDEGAFESDLIAAQIKY 240

Query: 234 VQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKV--ERSIRL 290
            +  ++E+E  I  ++A F  G D   + V  + +   ++ +  VYDP++ V  E+++  
Sbjct: 241 KRDQEYELEQKIVASIALFAGGYDRVVAKVSIDYDFSKEESQSEVYDPNTVVRSEQTLEE 300

Query: 291 SKDAQRSETSQP-ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
            K+  + +  Q    AV+    +  + D+      + E   K +  +N EI+ K   TT 
Sbjct: 301 HKEGYKDKEIQGVPGAVSNIGPVEGLDDKG-----AREVYTKNQTTTNNEISKKITNTTK 355

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKI--------DSYLAEINKIVSAATGINSR 401
               ++R+S AVVV+ G+   +   + DQG I        D  +  I  +   A G N  
Sbjct: 356 QFATIKRISAAVVVD-GKYKVI---TDDQGNITNEYMPLSDKEIQAIENLTKGAIGFNLA 411

Query: 402 RGDTITITSMDF-----LEN--QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTF 454
           RGD + + +++F     +EN  Q F S  V+  F+  +   FA ++  L      ++V F
Sbjct: 412 RGDAVEVNNLEFHRTAKVENKVQTFYSRFVE-PFIPPVKYVFAAIL--LFIFYKKVIVPF 468


>gi|237666941|ref|ZP_04526926.1| flagellar M-ring protein FliF [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|237658140|gb|EEP55695.1| flagellar M-ring protein FliF [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 520

 Score =  120 bits (300), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 117/421 (27%), Positives = 210/421 (49%), Gaps = 42/421 (9%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           +L + FKS     + +I ++AS+  V I + ++A F+  S  Y  L+  L+ +D   +  
Sbjct: 10  ELFEKFKSQNK--KIKIAVIASIAAVLIAI-VSAVFYSTSNKYAVLFSNLDTTDAKTVVD 66

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L+   ++ +I  + ++I VP + V K ++ LA   L S S+  GYEL D+ +SFG+T  
Sbjct: 67  RLTTEKVESKIDSSTNTIWVPKNQVDKLKLELAP-DLKSGST--GYELMDEQSSFGMTDE 123

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
             ++ + R LEGEI + I+S+  I  A+V+I   D   F K  A  +A+V I+    +  
Sbjct: 124 EFKLKKKRMLEGEIEKVIKSLEPIENAKVNITEADNSVFVKDKAVGSAAVTIKLKEGATL 183

Query: 186 --KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQH---- 239
                +AI  +V+ ++ N+   +VTV+D    LLT  ++     G++ S   + QH    
Sbjct: 184 TDDQVKAIVAVVSTSIENVPKENVTVIDQNSNLLT-RDLNEEANGQASSETISKQHRAEE 242

Query: 240 EIEMNINKALAAFL----GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
           E E  + K++ + L    G  N  + V A L+ D++Q  E   DP+      + +S++  
Sbjct: 243 EYEDRLQKSIVSLLEPIVGKGNVTAVVKANLDFDSKQQTETTIDPN-----KVIVSQETL 297

Query: 296 RSETSQPESAVT---VEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
           +   +  +  V+   V+ NM +    ++    S  N+ K+E+++NY+       T     
Sbjct: 298 KEINNNGDGTVSQSPVDNNMSN----EIVNNNSSSNSSKEEQKTNYDSGKSESKTIQAQG 353

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
           K++RL+  V +NK  LT+   +  + G            V+ A GI++ RGD IT++ M 
Sbjct: 354 KVDRLTATVYLNK-TLTQEERQEFEDG------------VANAIGIDATRGDQITVSGMT 400

Query: 413 F 413
           F
Sbjct: 401 F 401


>gi|254299704|ref|ZP_04967153.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 406e]
 gi|157809299|gb|EDO86469.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 406e]
          Length = 532

 Score =  120 bits (300), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 104/380 (27%), Positives = 191/380 (50%), Gaps = 34/380 (8%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
           +Y  L+   E   ++ +   L    I +RI  +   + V  S V +AR+ LAA+G+ ++ 
Sbjct: 35  NYKPLFGAREPVQLDDVVSTLDAQRIPYRIHPDTGQVLVARSDVARARMTLAARGV-TAK 93

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
           +  G E  D+ +  G + F+Q++   R LE E+A++I ++  +  ARVH+ +    SF  
Sbjct: 94  AAPGLEQIDQDDPLGTSQFVQDVRFRRGLESELAQSIATLEPVERARVHLSIAKSSSFVM 153

Query: 167 IGARPTASVMIRAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EM 222
           +    +A+ ++  + P    + E   A+ +LVA +VPNL    V+V+D  G  L+A  ++
Sbjct: 154 MDGDKSAASVVLTLKPGRRLAKEQIAAVINLVAGSVPNLAPAKVSVVDQHGAFLSARVDL 213

Query: 223 ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPD 281
           + ++ G    I    + ++  N+   LA  LG+ NFR +V A +N D  ++ RE      
Sbjct: 214 DGDLTGTD-EIAARFREDVTRNVEDLLAPSLGLGNFRVSVTALVNNDRVEETRE------ 266

Query: 282 SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEE------Q 335
            +   + ++  +A R+E ++   A+ V  ++   S+R V +P S    D   +      Q
Sbjct: 267 -QFGEAPKVMNEATRNEQNRDRVALGVPGSL---SNRPVDVPASEPQADGGTQRAATTRQ 322

Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS--YLAEINKIVS 393
             Y+ N   I       +L++LS+AVV+N          S  +GK  S   L  I++I+ 
Sbjct: 323 FAYDRNITQI--KRGRGQLKKLSVAVVLNN-------AVSPAKGKPWSPEQLRRIDEILR 373

Query: 394 AATGINSRRGDTITITSMDF 413
           +  GI+ +RGD + ++S+DF
Sbjct: 374 SGLGIDKQRGDQLIVSSLDF 393


>gi|288550127|ref|ZP_05969368.2| flagellar M-ring protein FliF [Enterobacter cancerogenus ATCC
           35316]
 gi|288316307|gb|EFC55245.1| flagellar M-ring protein FliF [Enterobacter cancerogenus ATCC
           35316]
          Length = 533

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 116/424 (27%), Positives = 195/424 (45%), Gaps = 60/424 (14%)

Query: 26  ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISV 85
             V+LV  ++F     + ++  Y  LY   E   V ++   L   +I +RI+ +   I V
Sbjct: 4   GGVLLVAAIVF---SLWRSNQGYVALYGSDEKLPVAQVVEVLGAESIAYRINPDNGQILV 60

Query: 86  PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145
           P   + +AR+ LAA+G+ ++    GYEL DK    G + F+Q +   R+LEGE+AR+I +
Sbjct: 61  PEDKLPRARMALAAKGI-TAVMPDGYELMDKDEMLGSSQFVQNVRYKRSLEGELARSIMA 119

Query: 146 ISGIVAARVHIVMPDMGSFRKIGARP--TASVM--IRAINPSVYKSAEAIRHLVAAAVPN 201
           +  +  ARVH+ + +  SF  +  +P  +ASVM  +R       +   AI  LVA +VP 
Sbjct: 120 LDPVENARVHLGLSESSSF-VMTNKPQSSASVMLQLRYGKHLDEQQVAAIVQLVAGSVPG 178

Query: 202 LDMGDVTVLDSTGKLLTANEMERNILGKSL----SIVQAIQHEIEMNINKALAAFLGVDN 257
           +  G V V+D  G LL+ N  +      S+     +++ I++E   NI   L+   G +N
Sbjct: 179 MQPGSVRVVDQAGNLLSENGQQGGTSMASIRQGRDVIERIKNETTNNIAALLSPLFGNEN 238

Query: 258 FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNM---PH 314
           FR +V   ++M + +            E   RL K+ Q S+ +      T E  M     
Sbjct: 239 FRISVTPTVDMSSVE------------ETQERLGKEPQVSDENISHENTTNELAMGIPGS 286

Query: 315 VSDRKVP-----------------------LPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           +S+R V                         P SL  + + +EQ  Y  +       H  
Sbjct: 287 LSNRPVNQPAPATPPMAANAQTAQTETQNRTPSSL--SSRSQEQRKYAFDRDIRHIRHPG 344

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
           YKLE+L +AV +N+     +   + +Q      L  + ++V  A GI   RGD++T+  +
Sbjct: 345 YKLEKLRVAVALNQA-AKPLASMTPEQ------LTALTRLVEDAAGIEKDRGDSLTLDRL 397

Query: 412 DFLE 415
            F++
Sbjct: 398 AFID 401


>gi|315636314|ref|ZP_07891564.1| flagellar M-ring protein FliF [Arcobacter butzleri JV22]
 gi|315479403|gb|EFU70086.1| flagellar M-ring protein FliF [Arcobacter butzleri JV22]
          Length = 574

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 117/470 (24%), Positives = 232/470 (49%), Gaps = 51/470 (10%)

Query: 4   LDQLLQFFKSGTSLGRTRILILAS------VILVPIMLFMAARFFVNSPHYDNLYVKLEV 57
           +DQLL+F     +L +++ +IL S      +I+V  +++ + +      +Y  +   L  
Sbjct: 1   MDQLLKFI---NNLNKSQRIILVSGFALLFIIVVGFLIYSSIKAEDKKLNY-TIASNLTQ 56

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSS--MVGKARIHLAAQGLPSSSSNSGYELFD 115
           +DV R S  L  + I F +S +G+++++ +S   +  A+I L      +++ + G+E+F+
Sbjct: 57  ADVMRASEELEASGIQFVVSGSGNNLTLKTSQEFINIAKIKLVTSE-AATNKHVGWEIFE 115

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
           K +S G T+F  ++  +RALEGE++R+++S+SG++ A V I +P    F +  A  TAS 
Sbjct: 116 K-SSLGTTNFENKVKYLRALEGELSRSLESLSGVLKANVKIAIPKETIFTEKRADTTASA 174

Query: 176 MIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL- 231
           +I ++   ++   K  + I++ +A+AVP+L   ++ ++D  G LL  N  E N +  +  
Sbjct: 175 VI-SLKQGIHLTKKQIDGIKNFIASAVPDLKQENIQLIDQDGNLLEQNIDEENTIKSAAQ 233

Query: 232 -SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290
                 I+ + E  I   L   +      + V   L+   + + E +Y P+  + RS ++
Sbjct: 234 NKYKDKIEKDYEAKIISLLEPVVETGRVVAKVNVALDFVKKDVEEEIYSPEGSI-RSQQV 292

Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSL-------ENTDKKEEQSNYEINTK 343
            ++   ++   P +       +  V D  + +P ++        N++     +NYEI+ K
Sbjct: 293 IENTNNTQGMLPNNG-----GVAGV-DNNIQVPTTVGDGSKISSNSEGSNTVTNYEISRK 346

Query: 344 SIATTHDNY-KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402
            I+    NY  ++R++ +V  +    + VL    D+G+   ++A +  +   A G +  R
Sbjct: 347 VISQKDGNYTNIKRITASVTFD----SAVLKDHPDKGE---FIASLESLSGDAIGYDRGR 399

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINA--LVFLVGTL 450
           GDTIT+    F+  +  N     V         F  VIN+   + +VGT+
Sbjct: 400 GDTITVKDFKFVGAKALNENGQLVD-------EFGNVINSGDGISVVGTM 442


>gi|293408353|ref|ZP_06652192.1| flagellar M-ring protein FliF [Escherichia coli B354]
 gi|291471531|gb|EFF14014.1| flagellar M-ring protein FliF [Escherichia coli B354]
          Length = 548

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 109/411 (26%), Positives = 197/411 (47%), Gaps = 43/411 (10%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           L +A+  ++  +L+   R +V+      LY + E   V++I   L    + +RI      
Sbjct: 33  LAVAATAIIVSVLWTGNRGYVS------LYGRQENLPVSQIVTVLDGEKLSYRIDPQSGQ 86

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP   + K R+ LAA+G+  +   SGYEL DK    G + F+Q +   R+LEGE+A++
Sbjct: 87  ILVPEDELSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSSQFVQNVRYKRSLEGELAQS 145

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARP--TASVMIR-----AINPSVYKSAEAIRHLV 195
           I S+  + +ARVH+ + +  SF  +   P  +ASV++R      +N        AI HLV
Sbjct: 146 IMSLDAVESARVHLALNEESSF-VVSDEPQNSASVVVRLHYGAKLN---MDQVNAIVHLV 201

Query: 196 AAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINKALAA 251
           + ++P L    V+V+D  G LLT    A E       K   I++ IQ +   ++   L +
Sbjct: 202 SGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRASVANVLDS 261

Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQ 310
            +G  N+R +V+ +L++ T    +  Y    K+ R    L  D  +     P S      
Sbjct: 262 LVGSGNYRVSVMPDLDLSTIDETQEHYGDAPKINREENVLDSDTNQVAMGVPGSL----S 317

Query: 311 NMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
           N P V+  ++         P +L    + +   +Y+ + + I   H  + ++RL++AVV+
Sbjct: 318 NRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHI--QHPGFAVKRLNVAVVL 375

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           N+          A +        ++  +++ A GI+ +RGD +T++ ++F+
Sbjct: 376 NQ-------NAPALKNWKPEQTTQLTALLNNAAGIDVQRGDNLTLSLLNFV 419


>gi|188492056|ref|ZP_02999326.1| flagellar M-ring protein FliF [Escherichia coli 53638]
 gi|188487255|gb|EDU62358.1| flagellar M-ring protein FliF [Escherichia coli 53638]
          Length = 548

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 111/415 (26%), Positives = 199/415 (47%), Gaps = 51/415 (12%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           L +A+  ++  +L+ + R +V+       Y + E   V++I   L    + +RI      
Sbjct: 33  LAVAATAIIVSVLWTSNRGYVS------FYGRQENLPVSQIVSVLDGEKLTYRIDPQSGQ 86

Query: 83  ISVPSSMVGKARIHLAAQG----LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           I VP   + K R+ LAA+G    LPS     GYEL DK    G + F+Q +   R+LEGE
Sbjct: 87  ILVPEDELSKTRMTLAAKGVQAILPS-----GYELMDKDEVLGSSQFVQNVRYKRSLEGE 141

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARP--TASVMIR-----AINPSVYKSAEAI 191
           +A++I S+  + +ARVH+ + +  SF  +   P  +ASV++R      +N        AI
Sbjct: 142 LAQSIMSLDAVESARVHLALNEESSF-VVSDVPQNSASVVVRLHYGAKLN---MDQVNAI 197

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            HLV+ ++P L    V+V+D  G LLT    A E       K   I++ IQ +   ++  
Sbjct: 198 VHLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRASVAN 257

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAV 306
            L + +G  N+R +V+ +L++ T    +  Y    K+ R    L  D  +     P S  
Sbjct: 258 VLDSLVGTGNYRVSVMPDLDLSTIDETQEHYGDAPKINREESVLDSDTNQVAMGVPGSL- 316

Query: 307 TVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
               N P V+  ++         P +L    + +   +Y+ + + I   H  + ++RL++
Sbjct: 317 ---SNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHI--QHPGFAVKRLNV 371

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           AVV+N+          A +       A++  +++ A GI+++RGD +T++ ++F+
Sbjct: 372 AVVLNQ-------DAPALKNWKPEQTAQLTALLNNAAGIDAQRGDNLTLSLLNFV 419


>gi|319787100|ref|YP_004146575.1| flagellar M-ring protein FliF [Pseudoxanthomonas suwonensis 11-1]
 gi|317465612|gb|ADV27344.1| flagellar M-ring protein FliF [Pseudoxanthomonas suwonensis 11-1]
          Length = 573

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 136/532 (25%), Positives = 243/532 (45%), Gaps = 40/532 (7%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           F+   P Y  LY  L+       +  L  A I FRI    S+ISVP   +  AR+ LA  
Sbjct: 53  FWSQKPAYTPLYTGLDPKATAEATDLLRAAQIPFRIDQATSAISVPEENLHDARLKLAGS 112

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GL + S   G+EL ++   FG++ F++      ALE E+ RTI ++  +  ARVH+ +P 
Sbjct: 113 GL-TESGRLGFELMERDPGFGVSQFVENARYQHALETELVRTISTLRPVRDARVHLAIPK 171

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
             +F +     +ASV++   + +V +    +AI HLV++++P+L    VTV+D  G++++
Sbjct: 172 PSAFTRAREAASASVVLELRSGAVLERNQVDAIVHLVSSSIPDLAPERVTVVDQNGRMIS 231

Query: 219 ANEMERNILGKSLSIVQAIQ-HEIEMNINKALAAFLGVDNFRSAVVAELNMD-----TQQ 272
            N    N     LS VQ  Q    E + N+ +   L        V AE+ +D     T++
Sbjct: 232 RNG---NDSASELSAVQFEQVRRQETSYNQRIRELLEPLTGSGRVNAEVTVDMDFSVTEE 288

Query: 273 IREIVYDPDSKVERSIRLSKDAQRSETSQ---------PESAVTVEQNMPHVSDRKVPLP 323
            RE+ ++ + +  RS ++S++    E  Q         P  AV  +QN            
Sbjct: 289 AREL-FNAEPQKLRSEQVSENTTAGEGPQGIPGATSNTPPGAV-AQQNADGTPAPGTVAT 346

Query: 324 RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS 383
            +      +    N+E++     T     ++ R++ AV+V+        G+ A Q   + 
Sbjct: 347 ATAAGNSSRSATRNFELDRTLQHTRQPAGRIRRVTAAVLVDHVPRAGGDGKVALQPLSEQ 406

Query: 384 YLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI-NA 442
            LA + ++V  A G +  RGD +++ +  F+      +  ++  + D   R  A V+  A
Sbjct: 407 ELARVQELVRQAVGFDPARGDVVSVVNAPFVREDAPAAEPLKW-WEDPRMRDIARVLAGA 465

Query: 443 LVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND----N 498
           LV L   LL   L   +LR++ +   AKK    G    S  P ++ V+  L+ +D     
Sbjct: 466 LVVLA--LLFGVL-RPSLRQIASPAGAKK---SGSGEASDEPATAEVS--LVEDDLDIPA 517

Query: 499 IALDSSNQDIFSHSRNLQ-SRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549
           +A D++   + +    +     NSY  +  + R    +  + +R A++++ W
Sbjct: 518 LAGDTAQLGLQAPGAPMALPSSNSYEDRLRNAR--EAVRADSKRVAQVVKDW 567


>gi|170737019|ref|YP_001778279.1| flagellar M-ring protein FliF [Burkholderia cenocepacia MC0-3]
 gi|169819207|gb|ACA93789.1| flagellar M-ring protein FliF [Burkholderia cenocepacia MC0-3]
          Length = 548

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 104/380 (27%), Positives = 185/380 (48%), Gaps = 35/380 (9%)

Query: 48  YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           Y  L+   E      +  AL    I +RI  +   + VP   +G AR+ LAA+G+     
Sbjct: 59  YKPLFGSQEAVVAADMMAALDAEGIPYRIHPDSGQVLVPEQKLGAARMMLAAKGV-VGKL 117

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RK 166
             G E  DK +  G++ F+Q++   R LEGE+ ++I ++  + +ARVH+ +    SF   
Sbjct: 118 PEGLEQVDKSDPLGVSQFVQDVRFRRGLEGELTQSIMALEPVSSARVHLSIAKSASFILA 177

Query: 167 IGARPTASVMIRAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EM 222
            G + +ASV++  + P+   + E   AI  LVA +V NLD   VTV+D +G  L+A  ++
Sbjct: 178 DGDKSSASVVL-TLKPNRKLNKEQIAAIVALVAGSVANLDPARVTVIDQSGNHLSAQIDL 236

Query: 223 ERNILGKSL---SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQIREIVY 278
              +LG S     +   ++ ++  NI + L   LG  NFR++V  EL+ D  ++ RE   
Sbjct: 237 ---VLGNSTLDSELGAQMREQVLRNIRELLTPVLGDGNFRASVAVELDHDRVEETREQYG 293

Query: 279 DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVP-----LPRSLENTDKKE 333
           +     + +IR  KD  ++    P S          +S+R  P     +P +  ++ K  
Sbjct: 294 EAPKVTQEAIRDEKDIGQAALGVPGS----------LSNRPAPPSTASMPEA-PHSAKNA 342

Query: 334 EQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVS 393
           +   Y  +   +       +++RL++AVV+N             +    + LA+++ I+ 
Sbjct: 343 QTRQYAYDRNVVQIKRSPVRVKRLNVAVVLNN-----AAAPGGGKAWAPAQLAQVDTILR 397

Query: 394 AATGINSRRGDTITITSMDF 413
              GI++ R D +T++S+DF
Sbjct: 398 DGLGIDADRDDALTVSSLDF 417


>gi|83646781|ref|YP_435216.1| flagellar M-ring protein FliF [Hahella chejuensis KCTC 2396]
 gi|83634824|gb|ABC30791.1| flagellar M-ring protein FliF [Hahella chejuensis KCTC 2396]
          Length = 462

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 116/416 (27%), Positives = 206/416 (49%), Gaps = 60/416 (14%)

Query: 11  FKSGTSLGRTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
           F S  S GR    +LA++I+V   + L+M     + S +Y  LY  L+     +++  L+
Sbjct: 4   FWSEWSGGRRVTFVLAALIVVGAGVALYM----MLTSHNYQVLYKDLDTEQAAKLTEKLN 59

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
           E  I +++   GS + V    +  A++ LA+ G  + +   G+ELFD+ + +G+T F Q+
Sbjct: 60  ELKIPYQLGAQGSQVLVSQDDLYNAKLKLASSGY-ALNGGVGFELFDEAD-YGMTEFAQK 117

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA 188
           I   RAL+GE+ARTI +   I  ARVH+V+P+   F+K   +P ASV I  +    Y S 
Sbjct: 118 INYQRALQGELARTIMAFDEIKFARVHLVLPESSLFKKDNKQPKASVTI-VMEDGKYLSL 176

Query: 189 E---AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE------MERNILGKSLSIVQAIQH 239
           +    I++LVAA+V  L    VT+L+  G  LT  E      +   + GKS S+   +Q 
Sbjct: 177 DQINGIQNLVAASVEGLKPETVTLLNHKGVALTQVETGDQATVSAQLKGKS-SMEAFLQQ 235

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMD---TQQIREIVYDPDSKVERSIRLSKDAQR 296
           +I + +N+        D   +AV  ++ ++    +++RE +  P    ++   +   A R
Sbjct: 236 KIVVILNQIF------DEGTTAVRVDVALNHKRVERVRETLV-PFGDTDKGAVIKSSANR 288

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD-NYKLE 355
                       +  +P    RK   P S+ ++D KEE+  Y    K + T  D   ++E
Sbjct: 289 ------------QYELPDQDGRKK--PSSVISSDVKEEEYAY---GKQVETLSDAGGEVE 331

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
           R++++VV+           S +Q ++      I  ++++A G++  RGD + + +M
Sbjct: 332 RITVSVVIPA-------NASGEQIEV------IKSLIASAIGLDFERGDLVNVAAM 374


>gi|50120659|ref|YP_049826.1| flagellar MS-ring protein [Pectobacterium atrosepticum SCRI1043]
 gi|49611185|emb|CAG74631.1| flagellar M-ring protein [Pectobacterium atrosepticum SCRI1043]
          Length = 574

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 140/264 (53%), Gaps = 11/264 (4%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  LY  +   D   I   L++ NI +R +++G +I +P++ V + R+ LA  
Sbjct: 46  LWAKGPDYRVLYSNINDRDGGAIVSELTKLNIPYRFAESGGAIMIPAANVYETRLRLAQL 105

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F ++I   RALEGE++RTI+++  +  ARVH+ +P 
Sbjct: 106 GLPKGGA-VGFELLDQ-EKFGISQFSEQINYQRALEGELSRTIETLGPVQNARVHLAIPK 163

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    P++SV +     RA++     S   I ++V+++V  L   +VTV+D TG+
Sbjct: 164 PSLFVREQKSPSSSVTLTLQPGRALDEGQINS---IVYMVSSSVAGLPPDNVTVVDQTGR 220

Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT A    R++    L     ++   +  I   +A  +G+ N  + V A+++   ++  
Sbjct: 221 LLTQAGGSGRDLNAAQLKYSNEVEAMYQRRIESIIAPMVGMGNVHAQVTAQIDFSAREQT 280

Query: 275 EIVYDPDSKVERSIRLSKDAQRSE 298
           +  Y P+   +++   S+   +SE
Sbjct: 281 DEQYQPNQPPDKAAVRSQQTSQSE 304


>gi|315180474|gb|ADT87388.1| flagellar M-ring protein [Vibrio furnissii NCTC 11218]
          Length = 568

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 111/402 (27%), Positives = 191/402 (47%), Gaps = 28/402 (6%)

Query: 22  ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81
           I+ + S+I   I++ M    + +S  Y  LY      D +++   L ++ + + ++ +  
Sbjct: 38  IITIFSMISAAIIVIM---LWASSEDYRPLYSNSSNYDSSQVLQLLDQSGLKYELNKDSG 94

Query: 82  SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
            I VP+  V   R+ LAA+GL      SG++  +   + G + FM+      ALEGE+AR
Sbjct: 95  QIMVPAKDVATTRMMLAAKGL-KQQLPSGFDALESKGALGESQFMESARYRHALEGELAR 153

Query: 142 TIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAA 198
           +I ++  I  ARVH+ +P    F RK   +  ASVM++ I+    KSA+  +I +LV+ A
Sbjct: 154 SIVTMESIALARVHLAIPKTSLFKRKDQEQAQASVMVQLIDGMDLKSAQVTSIVNLVSGA 213

Query: 199 VPNLDMGDVTVLDSTGKLLTANEMERNIL---GKSLSIVQAIQHEIEMNINKALAAFLGV 255
           +  L   +V V+D  G+LL+ +    +I     +     + ++  +    +  L   LG 
Sbjct: 214 IIGLKPENVRVIDQYGRLLSKDGSMGDISHSGDRQNDFRRTLETRLVSQASDMLTPILGA 273

Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV 315
            NFR  V A+++   +Q  E  Y   + V RS  +  D   +  S          N P V
Sbjct: 274 ANFRVQVAAKVDFSKRQETEESY--GAPVMRSETIFND--ENSGSMALGIPGALSNTPPV 329

Query: 316 SD---RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372
           +D      P  R++ N  K+E    Y +  + +   H    LE+L+I+V+VN+   T   
Sbjct: 330 TDGDTNTTPESRNVRNEAKRE----YAVGGRVVHVQHQQGVLEKLTISVIVNEHNAT--- 382

Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
                +G  D  LA I  ++  A G ++ RGD I ++S  F+
Sbjct: 383 ----SEGWSDESLARITNVIQNAVGYDAVRGDQIYVSSFPFV 420


>gi|260768771|ref|ZP_05877705.1| flagellar M-ring protein FliF [Vibrio furnissii CIP 102972]
 gi|260616801|gb|EEX41986.1| flagellar M-ring protein FliF [Vibrio furnissii CIP 102972]
          Length = 568

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 111/402 (27%), Positives = 191/402 (47%), Gaps = 28/402 (6%)

Query: 22  ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81
           I+ + S+I   I++ M    + +S  Y  LY      D +++   L ++ + + ++ +  
Sbjct: 38  IITIFSMISAAIIVIM---LWASSEDYRPLYSNSSNYDSSQVLQLLDQSGLKYELNKDSG 94

Query: 82  SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
            I VP+  V   R+ LAA+GL      SG++  +   + G + FM+      ALEGE+AR
Sbjct: 95  QIMVPAKDVATTRMMLAAKGL-KQQLPSGFDALESKGALGESQFMESARYRHALEGELAR 153

Query: 142 TIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAA 198
           +I ++  I  ARVH+ +P    F RK   +  ASVM++ I+    KSA+  +I +LV+ A
Sbjct: 154 SIVTMESIALARVHLAIPKTSLFKRKDQEQAQASVMVQLIDGMDLKSAQVTSIVNLVSGA 213

Query: 199 VPNLDMGDVTVLDSTGKLLTANEMERNIL---GKSLSIVQAIQHEIEMNINKALAAFLGV 255
           +  L   +V V+D  G+LL+ +    +I     +     + ++  +    +  L   LG 
Sbjct: 214 IIGLKPENVRVIDQYGRLLSKDGSMGDISHSGDRQNDFRRTLETRLVSQASDMLTPILGA 273

Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV 315
            NFR  V A+++   +Q  E  Y   + V RS  +  D   +  S          N P V
Sbjct: 274 ANFRVQVAAKVDFSKRQETEESY--GAPVMRSETIFND--ENSGSMALGIPGALSNTPPV 329

Query: 316 SD---RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372
           +D      P  R++ N  K+E    Y +  + +   H    LE+L+I+V+VN+   T   
Sbjct: 330 TDGDTNATPESRNVRNEAKRE----YAVGGRVVHVQHQQGVLEKLTISVIVNEHSAT--- 382

Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
                +G  D  LA I  ++  A G ++ RGD I ++S  F+
Sbjct: 383 ----SEGWSDESLARITNVIQNAVGYDAVRGDQIYVSSFPFV 420


>gi|284041509|ref|YP_003391849.1| flagellar M-ring protein FliF [Conexibacter woesei DSM 14684]
 gi|283945730|gb|ADB48474.1| flagellar M-ring protein FliF [Conexibacter woesei DSM 14684]
          Length = 505

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 104/401 (25%), Positives = 176/401 (43%), Gaps = 24/401 (5%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           R +I++    + + ++LF   +    +P Y  L   ++  D   ++ AL E  I + + +
Sbjct: 13  RGKIVLAGGALAIVVVLFFLFQI-ATAPSYTTLLTGMDPKDTGEVTAALDERGIAYELQN 71

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           NG++++V      +ARI LA  GLP  ++N GY++ D     G ++F Q +   RALEGE
Sbjct: 72  NGTALAVQKGQTAQARIALAGAGLP-GNTNDGYKILDD-QKMGTSNFQQNVNYQRALEGE 129

Query: 139 IARTIQSISGIVAARVHIVMPDMGS--FRKIGARPTASVMIRAINPSVYKSAEAIRHLVA 196
           I  TI+ + G+ +A+V +V+PD  +  F +     TA+V++   +         I  LV 
Sbjct: 130 IGTTIEEVDGVSSAQVQLVLPDREAQLFAENVNPATAAVLLSGASTLDEGQVRGIAQLVT 189

Query: 197 AAVPNLDMGDVTVLDSTGKLL--TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLG 254
            +VP L    VT+ DS+G +L  TA     + L    +       +   NI   LA  +G
Sbjct: 190 NSVPGLKSEKVTITDSSGTMLWPTATSGSSSGLLAKQAAEARYNQQTATNITAMLARTVG 249

Query: 255 VDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPH 314
            D  +  V A+L+ +      +VY  D     S R  ++   S   +         N P 
Sbjct: 250 PDKVQVQVKADLDANEATQDRLVYGRDG-TPLSNRAERETLVSRGGRAGGPAGTAGNNPP 308

Query: 315 VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR 374
           V   +        +  ++ E  N  +N     T      + R  +AV+V           
Sbjct: 309 VYAGQA---GGDSDYRRESEDENLAVNKTVTRTRIAPGAVNRQQVAVLV----------- 354

Query: 375 SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
             D     + L +I   V +A GI+  RGD +T+ S+ F E
Sbjct: 355 --DDSVPAAMLPQIRDAVMSAAGIDEDRGDVLTLGSIPFAE 393


>gi|253688952|ref|YP_003018142.1| flagellar M-ring protein FliF [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251755530|gb|ACT13606.1| flagellar M-ring protein FliF [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 574

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 139/264 (52%), Gaps = 11/264 (4%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  LY  +   D   I   L++ NI +R +++G +I +P+  V + R+ LA  
Sbjct: 46  LWAKGPDYRVLYSNINDRDGGAIVGELTKLNIPYRFAESGGAIMIPAEKVYETRLRLAQL 105

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F ++I   RALEGE++RTI+++  +  ARVH+ +P 
Sbjct: 106 GLPKGGA-VGFELLDQ-EKFGISQFSEQINYQRALEGELSRTIETLGPVQNARVHLAIPK 163

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    P++SV +     RA++     S   I ++V+++V  L   +VTV+D TG+
Sbjct: 164 PSLFVREQKAPSSSVTLTLQPGRALDEGQINS---IVYMVSSSVAGLPPDNVTVVDQTGR 220

Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT A    R++    L     ++   +  I   +A  +G+ N  + V A+++   ++  
Sbjct: 221 LLTQAGGSGRDLNAAQLKYSNEVEAMYQRRIESIIAPMVGMGNVHAQVTAQIDFSAREQT 280

Query: 275 EIVYDPDSKVERSIRLSKDAQRSE 298
           +  Y P+   +++   S+   +SE
Sbjct: 281 DEQYQPNQPPDKAAVRSQQTSQSE 304


>gi|298345990|ref|YP_003718677.1| flagellar M-ring protein FliF [Mobiluncus curtisii ATCC 43063]
 gi|304390252|ref|ZP_07372206.1| flagellar M-ring protein FliF [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|298236051|gb|ADI67183.1| flagellar M-ring protein FliF [Mobiluncus curtisii ATCC 43063]
 gi|304326734|gb|EFL93978.1| flagellar M-ring protein FliF [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 538

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 116/415 (27%), Positives = 196/415 (47%), Gaps = 55/415 (13%)

Query: 16  SLGRTRILIL--ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73
           SLG+  + I+  A +IL  ++L+     +V SP Y  LY  L   D   ++  L    I 
Sbjct: 20  SLGQKTLSIIGVAVLILGGVVLY----SWVASPDYTTLYSGLTDKDQAAVTEQLDSQGIK 75

Query: 74  FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
           ++++DNG  + VP+  V  AR+ LAA  LP+  + SGY + D +     + F Q++ + R
Sbjct: 76  YQVADNGV-VKVPAKDVQSARMSLAAADLPAQPT-SGYAVLDNLG-VAASDFQQQMAKKR 132

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-----SA 188
           ALEGE+A+TI ++  I  + V + +P    F     +P A+     I P   K     + 
Sbjct: 133 ALEGELAKTIDTMDDIDKSSVALAIPQETVFAD-PKKPVATTASVTITPKNRKDVSNDTV 191

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---------ANEMERNILGKSLSIVQAIQH 239
           +AI ++VAA+VPNLD   VTV+D+ G  L+         A+EME++++ K+L++V+ +  
Sbjct: 192 QAIINMVAASVPNLDKTGVTVVDTLGNSLSDKVEGGAAAASEMEKSLVDKALAVVEPL-- 249

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY-DPDSKVERSIRLSKDAQRSE 298
                        +G  N R +   +L+ D Q     VY DP+  V+     +   Q S 
Sbjct: 250 -------------VGAGNARVSAQVDLSQDNQVKTTRVYTDPEGGVKPLSASNAAEQYSG 296

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
                  V    N+ +  +       +  NT   +   N  +N +   +T       R S
Sbjct: 297 GGAVVGGVLGPDNIGNPYELNGNNGGNYTNT---QNVQNNAVNEEVTQSTRAPGAALRKS 353

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           ++VV+N     +   R  D       +A++  +V+AATGI++  GD + I+   F
Sbjct: 354 VSVVLN-----QETARRLD-------MAQVRDMVAAATGIDAATGDVVNISRSPF 396


>gi|315657517|ref|ZP_07910399.1| flagellar M-ring protein [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
 gi|315491989|gb|EFU81598.1| flagellar M-ring protein [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
          Length = 538

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 115/415 (27%), Positives = 196/415 (47%), Gaps = 55/415 (13%)

Query: 16  SLGRTRILIL--ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73
           SLG+  + I+  A +IL  ++L+     +V SP Y  LY  L   D   ++  L    I 
Sbjct: 20  SLGQKTLSIIGVAVLILGGVVLY----SWVASPDYTTLYSGLTDKDQAAVTEQLDSQGIK 75

Query: 74  FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
           ++++DNG  + VP+  V  AR+ LAA  LP+  + SGY + D +     + F Q++ + R
Sbjct: 76  YQVADNGV-VKVPAKDVQSARMSLAAADLPAQPT-SGYAVLDNLG-VAASDFQQQMAKKR 132

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-----SA 188
           ALEGE+A+TI ++  I  + V + +P    F     +P A+     I P   K     + 
Sbjct: 133 ALEGELAKTIDTMDDIDKSSVALAIPQETVFAD-PKKPVATTASVTITPKNRKDVSNDTV 191

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---------ANEMERNILGKSLSIVQAIQH 239
           +AI ++VAA+VPNLD   VTV+D+ G  L+         A+EME++++ K+L++V+ +  
Sbjct: 192 QAIINMVAASVPNLDKTGVTVVDTLGNSLSDKVEGGTAAASEMEKSLVDKALAVVEPL-- 249

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQ-QIREIVYDPDSKVERSIRLSKDAQRSE 298
                        +G  N R +   +L+ D Q +   I  DP+  V+     +   Q S 
Sbjct: 250 -------------VGAGNARVSAQVDLSQDNQVKTTRIYTDPEGGVKPLSASNAAEQYSG 296

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
                  V    N+ +  +       +  NT   +   N  +N +   +T       R S
Sbjct: 297 GGAVVGGVLGPDNIGNPYELNGNNGGNYTNT---QNVQNNAVNEEVTQSTRAPGAALRKS 353

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           ++VV+N     +   R  D       +A++  +V+AATGI++  GD + I+   F
Sbjct: 354 VSVVLN-----QETARRLD-------MAQVRDMVAAATGIDAATGDVVNISRSPF 396


>gi|323191522|gb|EFZ76783.1| flagellar M-ring protein FliF [Escherichia coli RN587/1]
          Length = 548

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 109/415 (26%), Positives = 198/415 (47%), Gaps = 51/415 (12%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           L +A+  ++  +L+   R +V+      LY + E   V++I   L    + +RI      
Sbjct: 33  LAVAATAIIVSVLWTGNRGYVS------LYGRQENLPVSQIVTVLDGEKLSYRIDPQSGL 86

Query: 83  ISVPSSMVGKARIHLAAQG----LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           I VP   + K R+ LAA+G    LPS     GYEL DK    G + F+Q +   R+LEGE
Sbjct: 87  ILVPEDALSKTRMTLAAKGVQAILPS-----GYELMDKDEVLGSSQFVQNVRYKRSLEGE 141

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARP--TASVMIR-----AINPSVYKSAEAI 191
           +A++I S+  + +ARVH+ + +  SF  +   P  +ASV++R      +N        AI
Sbjct: 142 LAQSIMSLDAVESARVHLALNEESSF-VVSDEPQNSASVVVRLHYGAKLN---MDQVTAI 197

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            HLV+ ++P L    V+V+D  G LLT    A E       K   I++ IQ +   ++  
Sbjct: 198 VHLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRASVAN 257

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAV 306
            L + +G  N+R +V+ +L++ T    +  Y    K+ R    L  D  +     P S  
Sbjct: 258 VLDSLVGTGNYRVSVMPDLDLSTIDETQEHYGDAPKINREESVLDSDTNQVAMGVPGSL- 316

Query: 307 TVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
               N P ++  ++         P +L    + +   +Y+ + + I   H  + ++RL++
Sbjct: 317 ---SNRPPIAANQMSNGTEENRSPEALSKHSESKRDYSYDRSVQHI--QHPGFAVKRLNV 371

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           AVV+N+          A +        ++  +++ A GI+++RGD ++++ ++F+
Sbjct: 372 AVVLNQ-------NAPALKNWKPEQTTQLTALLNNAAGIDAQRGDNLSLSLLNFV 419


>gi|315654577|ref|ZP_07907483.1| flagellar M-ring protein [Mobiluncus curtisii ATCC 51333]
 gi|315491041|gb|EFU80660.1| flagellar M-ring protein [Mobiluncus curtisii ATCC 51333]
          Length = 453

 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 115/415 (27%), Positives = 196/415 (47%), Gaps = 55/415 (13%)

Query: 16  SLGRTRILIL--ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73
           SLG+  + I+  A +IL  ++L+     +V SP Y  LY  L   D   ++  L    I 
Sbjct: 20  SLGQKTLSIIGVAVLILGGVVLY----SWVASPDYTTLYSGLTDKDQAAVTEQLDSQGIK 75

Query: 74  FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
           ++++DNG  + VP+  V  AR+ LAA  LP+  + SGY + D +     + F Q++ + R
Sbjct: 76  YQVADNGV-VKVPAKDVQSARMSLAAADLPAQPT-SGYAVLDNL-GVAASDFQQQMAKKR 132

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-----SA 188
           ALEGE+A+TI ++  I  + V + +P    F     +P A+     I P   K     + 
Sbjct: 133 ALEGELAKTIDTMDDIDKSSVALAIPQETVFAD-PKKPVATTASVTITPKNRKDVSNDTV 191

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---------ANEMERNILGKSLSIVQAIQH 239
           +AI ++VAA+VPNLD   VTV+D+ G  L+         A+EME++++ K+L++V+ +  
Sbjct: 192 QAIINMVAASVPNLDKTGVTVVDTLGNSLSDKVEGGTAAASEMEKSLVDKALAVVEPL-- 249

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQ-QIREIVYDPDSKVERSIRLSKDAQRSE 298
                        +G  N R +   +L+ D Q +   I  DP+  V+     +   Q S 
Sbjct: 250 -------------VGAGNARVSAQVDLSQDNQVKTTRIYTDPEGGVKPLSASNAAEQYSG 296

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
                  V    N+ +  +       +  NT   +   N  +N +   +T       R S
Sbjct: 297 GGAVVGGVLGPDNIGNPYELNGNNGGNYTNT---QNVQNNAVNEEVTQSTRAPGAALRKS 353

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           ++VV+N     +   R  D       +A++  +V+AATGI++  GD + I+   F
Sbjct: 354 VSVVLN-----QETARRLD-------MAQVRDMVAAATGIDAATGDVVNISRSPF 396


>gi|78047554|ref|YP_363729.1| flagellar MS-ring protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78035984|emb|CAJ23675.1| flagellar biosynthesis lipoprotein FliF [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 574

 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 133/569 (23%), Positives = 251/569 (44%), Gaps = 38/569 (6%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
           Q+F    SL  TR L + ++I + +   +A  F+   P Y +LY  L+       +  L 
Sbjct: 19  QWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAADLLR 78

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
            A I ++I     +ISVP   +  AR+ LA  GL    +  G+EL +K   FG++ F++ 
Sbjct: 79  TAQIPYKIDQATGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQFVEN 138

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYK 186
                ALE E++RTI ++  +  ARVH+ +P   +F +     +ASV+  +R        
Sbjct: 139 ARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQGLERN 198

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN-- 244
             +AI +LVA+++P++    VTV+D +G++L+  +   +    +    Q  + E   N  
Sbjct: 199 QVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESSYNQR 258

Query: 245 INKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           I + L    G          +++    ++ RE+ Y+ +    RS ++S D   S T  P+
Sbjct: 259 IRELLEPMTGPGRVNPETSVDMDFSVVEEAREL-YNGEPAKLRSEQVS-DTSTSATG-PQ 315

Query: 304 SAVTVEQNMP--------------HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
                  N P                +        +      K    NYE++     T  
Sbjct: 316 GPPGATSNSPGQPPAPAVAGAPGTPAAANGQAAAPATPTESSKSATRNYELDRTLQHTRQ 375

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
              +++R+S+AV+++        G+  +Q    + L  I  +V  A G ++ RGDT+++ 
Sbjct: 376 PAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQAVGFDAARGDTVSVM 435

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL--GL--HALRRLHN 465
           +  F+   +  +G     + +        V N L  LVG ++V  L  G+    LR+L  
Sbjct: 436 NAPFVREAV--AGEEGPKWWED-----PRVQNGLRLLVGAVVVLALLFGVVRPTLRQLTG 488

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
           +   K  +  GK+     P S+ V   ++  D+  +    +D     ++ ++ I    + 
Sbjct: 489 VTAVKDKQ--GKAGKDGTPQSADVR--MVDEDDDLMPRLEEDTAQIGQDKKTPIALPDAY 544

Query: 526 QSDLRLL-HMIEINEERFAKILRKWARSE 553
           +  +RL    ++ + +R A++++ W  SE
Sbjct: 545 EERMRLAREAVKADSKRVAQVVKGWVASE 573


>gi|213861543|ref|ZP_03386013.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 264

 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/200 (35%), Positives = 112/200 (56%), Gaps = 14/200 (7%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 43  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 102

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 103 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 160

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +    P+ASV +     RA++        A+ HLV++AV  L  G+VT++D +G 
Sbjct: 161 PSLFVREQKSPSASVTVTLEPGRALD---EGQISAVVHLVSSAVAGLPPGNVTLVDQSGH 217

Query: 216 LLTANEMERNILGKSLSIVQ 235
           LLT    + N  G+ L+  Q
Sbjct: 218 LLT----QSNTSGRDLNDAQ 233


>gi|325920574|ref|ZP_08182496.1| flagellar basal-body M-ring protein/flagellar hook-basal body
           protein FliF [Xanthomonas gardneri ATCC 19865]
 gi|325548967|gb|EGD19899.1| flagellar basal-body M-ring protein/flagellar hook-basal body
           protein FliF [Xanthomonas gardneri ATCC 19865]
          Length = 576

 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 130/570 (22%), Positives = 250/570 (43%), Gaps = 38/570 (6%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
           Q+F    SL  TR L + ++I + +   +A  ++   P Y +LY  L+       +  L 
Sbjct: 19  QWFDRVRSLQITRKLTMMAMIALAVGAGLAVFYWSQKPGYQSLYTGLDDKGNAEAADLLR 78

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
            A I ++I  N  +ISVP   +  AR+ LA  GL    +  G+EL +K   FG++ F++ 
Sbjct: 79  TAQIPYKIDQNTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQFVEN 138

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYK 186
                ALE E++RTI ++  +  ARVH+ +P   +F +     +ASV+  +R        
Sbjct: 139 ARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQGLERN 198

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN-- 244
             +AI +LVA+++P++    VTV+D +G++L+  +   +    +    Q  + E   N  
Sbjct: 199 QVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESSYNQR 258

Query: 245 INKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPDSKVERSIRLSKDAQRSETSQ-P 302
           I + L    G       V  +++    ++ RE+ Y+ +    RS +++  +  +   Q P
Sbjct: 259 IRELLEPMTGAGRVNPEVSVDMDFSVVEEAREL-YNGEPAKLRSEQINDTSTSATGPQGP 317

Query: 303 ESAVT--------------VEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
             A +                      +        +      K    NYE++     T 
Sbjct: 318 PGATSNSPGQPPAPAANATAGAPGAPAAANGQAAAPAAPTESSKSATRNYELDRTLQHTR 377

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
               +++R+S+AV+++        G+  +Q    + L  I  +V  A G ++ RGDT+++
Sbjct: 378 QPAGRIKRVSVAVLLDNVPRPGAKGKIVEQPLTAAELTRIEGLVKQAVGFDAARGDTVSV 437

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL--GL--HALRRLH 464
            +  F+   +  +G     + +        V N L  LVG ++V  L  G+    LR+L 
Sbjct: 438 MNAPFVREAV--AGEEGPKWWE-----DPRVQNGLRLLVGAVVVLALLFGVVRPTLRQLT 490

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
            +   K  +  GK      P S+ V    M +D+  +    +D     ++ +  I    +
Sbjct: 491 GVTVVKDKQ--GKGGKDGTPQSADVR---MVDDDDLMPRLEEDTAQLGQDKKVPIALPDA 545

Query: 525 KQSDLRLL-HMIEINEERFAKILRKWARSE 553
            +  +R+    ++ + +R A++++ W  SE
Sbjct: 546 YEERMRVAREAVKADSKRVAQVVKGWVASE 575


>gi|157373218|ref|YP_001471818.1| flagellar MS-ring protein [Shewanella sediminis HAW-EB3]
 gi|157315592|gb|ABV34690.1| flagellar M-ring protein FliF [Shewanella sediminis HAW-EB3]
          Length = 570

 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 110/406 (27%), Positives = 200/406 (49%), Gaps = 38/406 (9%)

Query: 22  ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81
           + ILASV+   I+L +    +  S  Y  LY + E  + ++I   L    I++R+  N  
Sbjct: 42  LAILASVVACVIVLLL----WTASQGYRPLYGQQEKVETSQIIEVLEAEGINYRLEANSG 97

Query: 82  SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
            + V    +GKAR+ LAA+G+ +    SG E  D  +  G + FM++     +LEGE++R
Sbjct: 98  LVLVQEDKLGKARMLLAARGVKAKVP-SGMESLDN-SGIGTSQFMEQAKYRHSLEGELSR 155

Query: 142 TIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAA 198
           TI ++  +  ARVH+ +P    F R+    P+ASVM+     S  +    EAI +LVA +
Sbjct: 156 TIMALKAVRTARVHLAIPKRTLFIRQQPELPSASVMLDLYAGSKIQPGQIEAIANLVAGS 215

Query: 199 VPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQAIQHEIEMNINKA---LAA 251
           V  +    V ++D  G  L++    N+       + L   Q ++  +   IN+A   LA 
Sbjct: 216 VTGMTPERVQIVDQEGNHLSSGIAINQDITQARDRQLKYTQELEQSL---INRASSMLAP 272

Query: 252 FLGVDNFRSAVVAELNMD-TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQ 310
            LG +NF+  + A++N +  ++ RE + DP S V      +++ Q    +  + A+ +  
Sbjct: 273 VLGKENFQVQIAAQVNFNQVEETRESL-DPQSVV------TQEKQSINDTNSDIAMGIPG 325

Query: 311 NMPHVSDRKVPLPRSLENTDK---KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367
            + + +  K    ++ ENT +   ++E   YE+      T     +LE LS++V++N   
Sbjct: 326 ALTNQAP-KAQANKTEENTRRNLNQQESRQYEVGRSVRHTRFQQMQLENLSVSVLLNN-- 382

Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
                  + + G  ++ ++++  +V  + G + +RGD  +I S DF
Sbjct: 383 -----QAAGENGWNEAQVSQLGTMVKDSIGYSMQRGDQFSINSFDF 423


>gi|21242698|ref|NP_642280.1| flagellar MS-ring protein [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21108171|gb|AAM36816.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 574

 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 136/574 (23%), Positives = 249/574 (43%), Gaps = 48/574 (8%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
           Q+F    SL  TR L + ++I + +   +A  F+   P Y +LY  L+       +  L 
Sbjct: 19  QWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAADLLR 78

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
            A I ++I     +ISVP   +  AR+ LA  GL    +  G+EL +K   FG++ F++ 
Sbjct: 79  TAQIPYKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQFVEN 138

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYK 186
                ALE E++RTI ++  +  ARVH+ +P   +F +     +ASV+  +R        
Sbjct: 139 ARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQGLERN 198

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN-- 244
             +AI +LVA+++P++    VTV+D +G++L+  +   +    +    Q  + E   N  
Sbjct: 199 QVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESSYNQR 258

Query: 245 INKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           I + L    G          +++    ++ RE+ Y+ +    RS ++S D   S T  P+
Sbjct: 259 IRELLEPMTGPGRVNPETSVDMDFSVVEEAREL-YNGEPAKLRSEQVS-DTSTSATG-PQ 315

Query: 304 SAVTVEQNMP--------------HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
                  N P                +        +      K    NYE++     T  
Sbjct: 316 GPPGATSNSPGQPPAPAVAGAPGTPAAANGQAAAPATPTESSKSATRNYELDRTLQHTRQ 375

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
              +++R+S+AV+++        G+  +Q    + L  I  +V  A G ++ RGDT+++ 
Sbjct: 376 PAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQAVGFDAARGDTVSVM 435

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL--GL--HALRRLHN 465
           +  F+   +  +G     + +        V N L  LVG ++V  L  G+    LR+L  
Sbjct: 436 NAPFVREAV--AGEEGPKWWED-----PRVQNGLRLLVGAVVVLALLFGVVRPTLRQLTG 488

Query: 466 IDDAKKGEVGGKSILSPPPISSAV-----TTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520
           +   K  +  GK+     P S+ V        LMP     L+     I    +   +  +
Sbjct: 489 VTAVKDKQ--GKAGKDGTPQSADVRMVDDDDDLMPR----LEEDTAQIGQDKKTPIALPD 542

Query: 521 SYVSKQSDLRLL-HMIEINEERFAKILRKWARSE 553
           +Y  +   +RL    ++ + +R A++++ W  SE
Sbjct: 543 AYEER---MRLAREAVKADSKRVAQVVKGWVASE 573


>gi|306813320|ref|ZP_07447513.1| flagellar MS-ring protein [Escherichia coli NC101]
 gi|305854083|gb|EFM54522.1| flagellar MS-ring protein [Escherichia coli NC101]
          Length = 548

 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 109/415 (26%), Positives = 197/415 (47%), Gaps = 51/415 (12%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           L +A+  ++  +L+   R +V+      LY + E   V++I   L    + + I      
Sbjct: 33  LAVAATAIIVSVLWTGNRGYVS------LYGRQENLPVSQIVTVLDGEKLTYCIDPQSGQ 86

Query: 83  ISVPSSMVGKARIHLAAQG----LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           I VP   + K R+ LAA+G    LPS     GYEL DK    G + F+Q +   R+LEGE
Sbjct: 87  ILVPEDELSKTRMTLAAKGVQAILPS-----GYELMDKDEVLGSSQFVQNVRYKRSLEGE 141

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARP--TASVMIR-----AINPSVYKSAEAI 191
           +A++I S+  + +ARVH+ + +  SF  +   P  +ASV++R      +N        AI
Sbjct: 142 LAQSIMSLDAVESARVHLALNEESSF-VVSDEPQNSASVVVRLHYGAKLN---MDQVNAI 197

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            HLV+ ++P L    V+V+D  G LLT    A E       K   I++ IQ +   ++  
Sbjct: 198 VHLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRASVAN 257

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAV 306
            L + +G  N+R +V+ +L++ T    +  Y    K+ R    L  D  +     P S  
Sbjct: 258 VLDSLVGTGNYRVSVMPDLDLSTIDETQEHYGDAPKINREESVLDSDTNQVAMGVPGSL- 316

Query: 307 TVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
               N P ++  ++         P +L    + +   +Y+ + + I   H  + ++RL++
Sbjct: 317 ---SNRPPIAANQMSNGTEENRSPEALSKHSESKRDYSYDRSVQHI--QHPGFAVKRLNV 371

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           AVV+N+          A +        ++  +++ A GI+++RGD +T++ ++F+
Sbjct: 372 AVVLNQ-------NAPALKNWKPEQTTQLTALLNNAAGIDAQRGDNLTLSLLNFV 419


>gi|194365657|ref|YP_002028267.1| flagellar MS-ring protein [Stenotrophomonas maltophilia R551-3]
 gi|194348461|gb|ACF51584.1| flagellar M-ring protein FliF [Stenotrophomonas maltophilia R551-3]
          Length = 548

 Score =  117 bits (293), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 112/449 (24%), Positives = 205/449 (45%), Gaps = 12/449 (2%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
           Q+F    SL  TR L L ++I V +   +   F+   P    LY  L+       +  L 
Sbjct: 17  QWFDRLQSLQITRRLGLMAMIAVAVAAGLFVFFWSQKPGMVPLYTGLDQKATAEATDLLR 76

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
            A I F++      I+VP   +  AR+ LA  GL + S   G+EL ++   FG++ F++ 
Sbjct: 77  AAQIPFQLDPATGGITVPEKNLHDARLKLAGSGL-TDSGKLGFELMERDPGFGVSQFVES 135

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYK 186
                ALE E++RTI ++  +  +RVH+ +P   +F +     +ASV   +R        
Sbjct: 136 ARYQHALETELSRTINTLRPVRDSRVHLAIPKPSAFTRQRDVASASVTLELRGGQQLERS 195

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN-- 244
             +AI H+VAA++P+L    VTV+D +G++L+ ++        +    Q  + E   N  
Sbjct: 196 QVDAIVHMVAASIPDLAPERVTVVDQSGRMLSVSDPNSEAAVNAAQFEQVRRQETSFNQR 255

Query: 245 INKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           I + L    G       V  +++   T++ RE+ Y+ + +  RS ++S+++  + T  P+
Sbjct: 256 IRELLEPMTGPGRVNPEVSVDMDFSVTEEAREL-YNGEPQKLRSEQMSENS--TTTPGPQ 312

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
                  N P          ++   + K   + NYE++     T     +++R+S+AV+V
Sbjct: 313 GVPGATSNSPPGQAAAPATAQTPTESSKNATR-NYELDRTLQHTRQPAGRIKRVSVAVLV 371

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           +        G+ A Q    + L  +  +V  A G N+ RGDT+++ +  F+ +     G 
Sbjct: 372 DNVPRAGANGKVAPQPLSAAELTRVEALVKQAVGFNAERGDTVSVMNAPFVRDTTPVEGP 431

Query: 424 V--QVSFMDILSRHFATVINALVFLVGTL 450
              ++ ++    R     +  L  L G L
Sbjct: 432 AWWELPWVHDAGRMLLGAVVVLALLFGVL 460


>gi|313650158|gb|EFS14571.1| flagellar M-ring domain protein [Shigella flexneri 2a str. 2457T]
 gi|332757276|gb|EGJ87613.1| flagellar M-ring protein domain protein [Shigella flexneri 2747-71]
 gi|332757502|gb|EGJ87837.1| flagellar M-ring protein domain protein [Shigella flexneri K-671]
 gi|332766674|gb|EGJ96878.1| hypothetical protein SF293071_2322 [Shigella flexneri 2930-71]
 gi|333017624|gb|EGK36936.1| flagellar M-ring protein domain protein [Shigella flexneri K-304]
          Length = 259

 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 121/231 (52%), Gaps = 7/231 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92
           + + +A   +  +P Y  L+  L   D   I   L++ NI +R S+   +I VP+  V +
Sbjct: 33  VAVMVALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGAIEVPADKVHE 92

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
            R  LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RTI++I  +  A
Sbjct: 93  LR--LAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRTIETIGPVKGA 148

Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVL 210
           RVH+ MP    F +    P+ASV +  +        +  AI HLV++AV  L  G+VT++
Sbjct: 149 RVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAGLPPGNVTLV 208

Query: 211 DSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRS 260
           D  G LLT +N   R++    L     ++  I+  I   L+  +G  N  +
Sbjct: 209 DQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQQRIEAILSPIVGNGNIHA 259


>gi|168187560|ref|ZP_02622195.1| flagellar M-ring protein FliF [Clostridium botulinum C str. Eklund]
 gi|169294591|gb|EDS76724.1| flagellar M-ring protein FliF [Clostridium botulinum C str. Eklund]
          Length = 522

 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 126/427 (29%), Positives = 207/427 (48%), Gaps = 51/427 (11%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPI---MLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L+  FK G + G+    I  SV++V I   ++++    F+N+  Y  LY  ++ +D   +
Sbjct: 11  LIDKFK-GLTKGKK---IAFSVLVVGIISGLIYLIV--FLNTTKYAVLYKDMDPNDAQTV 64

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L+E  +++++    SSI VP   V + R+ LA Q L S S   GYE+ +  +SFG+T
Sbjct: 65  MNKLNEKKVEYKVE--SSSIKVPEDKVSELRLELAPQ-LKSGSK--GYEILENADSFGMT 119

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
              +E+    ALEGE+A+ I+S+  +  ++V +VMP  G+F K      ASV I   N  
Sbjct: 120 DKERELNYKIALEGELAKNIKSLPEVKDSKVLLVMPQEGNFFKQAENAQASVRIE-FNEG 178

Query: 184 VYKSAEAIR---HLVAAAVPNLDMGDVTVL---DSTGKLLTANEMERNILGKSLSIVQAI 237
              S E I+    LV  +V NL   +V V+   +   K LT  ++  +  GK L+ V   
Sbjct: 179 KSISKEQIKAIISLVTGSVKNLKKENVKVIGVVNGQTKDLTE-DLFGDEDGKDLTTVTDK 237

Query: 238 QHEIEMNINKA--------LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
           Q++ + N+ K         L    G +  ++AV  +L+ D  +    V+DP++ V RS  
Sbjct: 238 QNKYKKNLEKEYVKKIMNILTPKYG-EGVKAAVNVDLDFDASEKTSTVWDPNNVV-RSEE 295

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSL-ENTDKKEEQSNYEINTKSIATT 348
             KD   S+  +  SA  V+ NM +  + +     S  E T K     NYE+      T 
Sbjct: 296 TEKDTDTSKGGKV-SAGPVDNNMSNTYNNQDGNGSSTHEKTTK-----NYEVGKIEQKTV 349

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
               K++++S +V +N   L+ V     D+ KI+S       +V+ A   +  RGD IT+
Sbjct: 350 GAPGKIKKVSTSVTINDENLSPV-----DKDKINS-------LVAGAISYDENRGDIITV 397

Query: 409 TSMDFLE 415
             + F E
Sbjct: 398 EGLKFNE 404


>gi|82523970|emb|CAI78781.1| flagellar biosynthesis/type III secretory pathway lipoprotein
           [uncultured epsilon proteobacterium]
          Length = 572

 Score =  116 bits (291), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 120/419 (28%), Positives = 204/419 (48%), Gaps = 63/419 (15%)

Query: 31  VPIMLFMAARFFVNSPH--YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSS 88
           V  ++FM      N+    ++ L+  L  +D  ++   L +  I++ I DN + I VP  
Sbjct: 33  VGFLIFMVVYTSKNTKESKFEVLFDSLSSADAAKVVEQLEKDGIEYEIEDN-NVIRVPRD 91

Query: 89  MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISG 148
           +V K RI +AA G+P  S   G+ELFD    FG TSF Q I  +RALEGE++RTI +++ 
Sbjct: 92  VVYKQRISIAALGIPKDS-GVGFELFD-TQEFGATSFDQNIKYLRALEGELSRTINALAP 149

Query: 149 IVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGD 206
           I +A V + +P    F +    PTASVMI  +      S +   I++LVA+AV  L   +
Sbjct: 150 IESASVSLALPKETLFVEKSVSPTASVMITLVEGRNLSSKQVRGIKNLVASAVTKLTPAN 209

Query: 207 VTVLDSTGKLLTANEMERNILGKSLSI----VQAIQHEIEMNINKALAAFLGVDNFRSAV 262
           V +++S G+ L  +E E   +G+  S+     +  + + +  I + L+ F+G       V
Sbjct: 210 VMLVNSDGETL-GDEDEMAQMGELSSVQQKYKEKEEKKRQKKIIQVLSPFVG---GTKKV 265

Query: 263 VAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVP- 321
           VA++ ++               + SI+ S     SET  PE+ V  EQN     +   P 
Sbjct: 266 VAQVTIE--------------FDFSIKNS----TSETFDPENVVRSEQNSEEKREGGAPA 307

Query: 322 ----LPRSLEN-----------TDKKEEQS----NYEINTKSIATTHDNY-KLERLSIAV 361
               +P ++ N           T +K E+S    NYE+  K+++TT   + ++ R++ AV
Sbjct: 308 EVGGVPGTVSNIGPVQGLKSNQTSEKYEKSTGTTNYEVG-KTVSTTKSQFARINRITAAV 366

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLA-------EINKIVSAATGINSRRGDTITITSMDF 413
           +V+ G+    L       +   YL         I+ +  ++ GI+  RGD +++ ++ F
Sbjct: 367 IVD-GKYKNKLNADGVPTEELEYLPLDETDIQAISSLAGSSIGIDEARGDQLSVKNLQF 424


>gi|170682472|ref|YP_001742357.1| flagellar MS-ring protein [Escherichia coli SMS-3-5]
 gi|170520190|gb|ACB18368.1| lateral flagellar M-ring protein LfiF [Escherichia coli SMS-3-5]
          Length = 548

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 109/415 (26%), Positives = 196/415 (47%), Gaps = 51/415 (12%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           L +A+  ++  +L+   R +V+      LY + E   V++I   L    + +RI      
Sbjct: 33  LAVAATAIIVSVLWTGNRGYVS------LYGRQENLPVSQIVTVLDGEKLSYRIDPQSGQ 86

Query: 83  ISVPSSMVGKARIHLAAQG----LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           I VP   + K R+ LAA+G    LPS     GYEL DK    G + F+Q +   R+LEGE
Sbjct: 87  ILVPEDELSKTRMTLAAKGVQAILPS-----GYELMDKDEVLGSSQFVQNVRYKRSLEGE 141

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARP--TASVMIR-----AINPSVYKSAEAI 191
           +A++I S+  + +ARVH+ + +  SF  +   P  +ASV++R      +N        AI
Sbjct: 142 LAQSIMSLDAVESARVHLALNEESSF-VVSDEPQNSASVVVRLHYGAKLN---MDQVNAI 197

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            HLV+ ++P L    V+V+D  G LLT    A E       K   I++ IQ +   ++  
Sbjct: 198 VHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRASVAN 257

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAV 306
            L + +G  N+R +V+ +L++      +  Y    K+ R    L  D  +     P S  
Sbjct: 258 VLDSLVGSGNYRVSVMPDLDLSNIDETQEHYGDAPKINREENVLDSDTNQVAMGVPGSL- 316

Query: 307 TVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
               N P ++  ++         P +L    + +   +Y+ + + I   H  + ++RL++
Sbjct: 317 ---SNRPPIAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHI--QHPGFAVKRLNV 371

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           AVV+N+          A +        ++  +++ A GI+ +RGD +T++ ++F+
Sbjct: 372 AVVLNQ-------NAPALKNWKPEQTTQLTALLNNAAGIDVQRGDNLTLSLLNFV 419


>gi|332187937|ref|ZP_08389670.1| flagellar M-ring protein FliF [Sphingomonas sp. S17]
 gi|332012098|gb|EGI54170.1| flagellar M-ring protein FliF [Sphingomonas sp. S17]
          Length = 580

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 110/404 (27%), Positives = 190/404 (47%), Gaps = 53/404 (13%)

Query: 44  NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP 103
           +SP    L+  L  +D   ++ ALS ANI  +I+D   +++V      KAR+ LA QGLP
Sbjct: 63  SSPPQKTLFENLSDADKQAVTTALSAANIKSKINDGTGALTVNEEDYSKARMLLAGQGLP 122

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVR-ALEGEIARTIQSISGIVAARVHIVMPDMG 162
             +   GY + D++   G++  + E  R+R A E E+AR+I+ I  +  ARVH+ MP+  
Sbjct: 123 KQAPG-GYAILDQL-PMGVSRAV-EGERLRQARESELARSIEEIDAVAEARVHLAMPEAS 179

Query: 163 SFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
            F +  A P+ASV++     RA++ +  +S   I +LVA++VP +   DVTV+D  G LL
Sbjct: 180 VFVRDKASPSASVVLKLNAGRALSEAQVQS---IINLVASSVPGMKPEDVTVVDQMGGLL 236

Query: 218 TANEMERNILGKS-----LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272
           +    ++   G S     +   + ++ +    + + L   +G  NF + V A++N+D   
Sbjct: 237 S----KKGADGASGDDRRIDFQRRLEEKYRTQLIQLLTPLVGAGNFTAEVQADVNLDETS 292

Query: 273 IREIVYDPDSKVERSIRLSKDAQRSETSQ----------PESAVTVEQ--------NMPH 314
                YD D  +          Q+  T            P  A T++Q          P 
Sbjct: 293 ATSERYDKDGALRAETGNWTGNQKDPTPPGGIPGALSNTPPPASTLQQPQAANGANGAPP 352

Query: 315 VSDRKVPLPRSLENTDKKEE--QSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372
              + V     L N +K+ +  Q  Y++N +   T      ++RL++AV++         
Sbjct: 353 ADGKPVAGGPGL-NPEKQSDAFQRAYDLNKQVSVTRAAPGSIKRLTVAVLL--------- 402

Query: 373 GRSADQGKIDSY-LAEINKIVSAATGINSRRGDTITITSMDFLE 415
            R    GK     + +I+ +V +A G + +R D +T+ S  F +
Sbjct: 403 -RDPATGKRSQMEITQISDLVKSAVGFDQQRNDNVTVISRKFAD 445


>gi|78045011|ref|YP_359840.1| flagellar MS-ring protein [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77997126|gb|ABB16025.1| flagellar M-ring protein FliF [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 528

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 116/457 (25%), Positives = 200/457 (43%), Gaps = 53/457 (11%)

Query: 28  VILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPS 87
           +IL  ++  +    F+  P Y  L   L+  +   I+  L E  I++++ D G++I VP 
Sbjct: 28  LILTAVLSLLLGYIFLGRPSYTPLATGLDAKEAGAIAEKLKEWKINYKLGDEGTTILVPK 87

Query: 88  SMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSIS 147
           S V +ARI LA+ G+  ++S  G+ELFD+    G + F  ++   RAL+ E+ RTI  + 
Sbjct: 88  SQVYEARIKLASAGVLETNSGIGFELFDQ-TKLGASDFENQVNYQRALQEELRRTIVQLD 146

Query: 148 GIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMG 205
            +  ARVH+V+P+   F       TAS++++          E   I +LVA +V  L   
Sbjct: 147 AVEDARVHLVLPEKSVFISEEKPATASILLKLKPLKKLTPQEIKGIIYLVANSVEGLKPE 206

Query: 206 DVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN--------INKALAAFLGVDN 257
           +V V+D+ G +L+    ++  L  SLS     Q E++          IN  L   LG   
Sbjct: 207 NVQVVDTYGNVLS----DQVDLSSSLSAQSGRQQEMKKQFETELTNRINNLLTTILGPGK 262

Query: 258 FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV------EQN 311
              ++ A+L+ + ++    +  P   V       + ++      P ++ TV       QN
Sbjct: 263 AVVSINADLDFNQEETTSQIALPGPLVSE-----QGSKEVVYGSPGASGTVGTGPNTNQN 317

Query: 312 MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV 371
            P+++        + E   K++   NY++             ++RLS A+ ++ G     
Sbjct: 318 YPYINGST-----NGEVQVKEDFTRNYQVGQTVYKLVKAPGTVKRLSAAIAIDSGV---- 368

Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF------LENQLFNSGTVQ 425
              +AD  K       I  IV+AA G +  RGD I I ++ F         +       +
Sbjct: 369 --PAADVNK-------IRDIVAAAMGYDQNRGDQIIINTITFDKTLAKQMEEQQAQAQKE 419

Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
                 L +  A    ALVFL    ++ F G+   R+
Sbjct: 420 QQARQALYKWLAIGAGALVFLS---IIVFFGIRRFRK 453


>gi|188589083|ref|YP_001920202.1| flagellar MS-ring protein [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188499364|gb|ACD52500.1| flagellar M-ring protein FliF [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 520

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 117/417 (28%), Positives = 198/417 (47%), Gaps = 36/417 (8%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           L + FKS +   + +I I  S + V I+  ++   + +S  Y  L+  L+  D   I   
Sbjct: 11  LWEKFKSQSK--KIKIAIFISCVAV-IIAIISTMIYTSSNKYQVLFSNLDPKDAQTILAK 67

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L+E  +  +I   G +I VP+  V + R+ LA + L S SS  GYEL D  +SFG+T   
Sbjct: 68  LNEQKVTTKIQ--GDTILVPNDKVDQLRLELAPE-LKSGSS--GYELMDSGSSFGMTDEE 122

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS--V 184
            ++ ++R  EGE+ +TI+S S I +ARVHI       F K      A+V +     S   
Sbjct: 123 FKVKKLRMQEGELEKTIKSFSQIESARVHITPSTDSVFVKESTPGKAAVYLELKTGSEIT 182

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-------EMERNILGKSLSIVQAI 237
               ++I  LV+ +  N+   ++ V+D    LLTAN        M    L K  S+ +  
Sbjct: 183 KDQVKSIVALVSGSTENVPKENIEVIDDKMNLLTANLNDDENEVMSSESLDKQYSLEKNY 242

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           + +++  I   L   +G D  ++ V  +L+ D++Q  + V DP+ KV  S +  K+   +
Sbjct: 243 EGKLQKEIVSLLEPVIGKDKVKATVNVDLDFDSKQQTQTVLDPN-KVVVSQQTIKEVNNT 301

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
                 S   V+ N   +S+       +  N+ ++E+++NYEI            +++R+
Sbjct: 302 GADGNISESPVDNN---ISNTTDDTNNTNSNSSREEQKNNYEIGKTETKVISAPGEVKRM 358

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAE-INKIVSAATGINSRRGDTITITSMDF 413
           + +VVV+              G +D+   + I   VS A G NS RGD I++  M+F
Sbjct: 359 TASVVVD--------------GNLDAATQQAIENAVSNAIGFNSVRGDQISVLGMNF 401


>gi|283834471|ref|ZP_06354212.1| flagellar M-ring protein FliF [Citrobacter youngae ATCC 29220]
 gi|291070018|gb|EFE08127.1| flagellar M-ring protein FliF [Citrobacter youngae ATCC 29220]
          Length = 560

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 105/394 (26%), Positives = 189/394 (47%), Gaps = 47/394 (11%)

Query: 48  YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           Y +LY   E   V++I   L    +++RI      I VP   + K R+ LAA+G+  +  
Sbjct: 50  YVSLYGSQENLPVSQIVTVLDGEKLEYRIDPQSGQILVPEEALSKTRMTLAAKGV-QAML 108

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
            SGYEL DK    G + F+Q I   R+LEGE+A++I ++  + +ARVH+ + +  SF  +
Sbjct: 109 PSGYELMDKDEVLGASQFVQNIRYKRSLEGELAQSIMTLDAVESARVHLALNEESSF-VV 167

Query: 168 GARP--TASVMIRAINPSV--YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----A 219
              P  +ASV++R    S        AI HLV+ +VP+L    V+V+D  G LL+    A
Sbjct: 168 SDEPQNSASVVVRLHYGSKLDLDQVNAIVHLVSGSVPDLKASLVSVVDQAGNLLSDGIGA 227

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM----------- 268
            E       K   I++ IQ +   ++   L + +G  N+R +V+ +L++           
Sbjct: 228 GEAVSAATRKRDQILKDIQDKTRASLANVLDSLVGTGNYRVSVMPDLDLSNIDETQEHYG 287

Query: 269 DTQQI--REIVYDPDSKVERSIRLSKDAQRSETSQPESAV------TVEQNMPHVSDRKV 320
           DT ++   E V D D+      +++     S +++P  A       T     P  S +  
Sbjct: 288 DTPKVNREETVLDSDTN-----QIAMGIPGSLSNRPPLAANQVANGTAAGTAPEESRQPA 342

Query: 321 PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380
            L +  EN      + +Y  +       H  + ++RL++AVV+N+          A +  
Sbjct: 343 ALSKHSEN------KRDYSWDRSVEHIQHPGFDIKRLNVAVVLNQ-------SAPALKNW 389

Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
                 ++  +++ A GI+++RGD ++++ ++F+
Sbjct: 390 KPEQTTQLTALLNNAAGIDAKRGDNLSLSLLNFV 423


>gi|88597235|ref|ZP_01100470.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|88190296|gb|EAQ94270.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni
           84-25]
          Length = 560

 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 120/434 (27%), Positives = 210/434 (48%), Gaps = 41/434 (9%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +L Q+ Q +++ T   + RI+I AS+I+V   L   A F  +  + +N Y  L V +V+ 
Sbjct: 6   MLHQIGQLYQNLTR--KQRIVIAASIIVVVGFLVFLALFHGSGSNANNGYAVL-VENVSP 62

Query: 63  ISVA-----LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
            S A     L + NI +++ ++ + I VP   V + R+ +A++GL    S  G+E FD  
Sbjct: 63  SSSAAIVAKLEQNNIPYKL-ESENKILVPQDQVYRQRMFIASEGL-IKDSRVGFEAFD-T 119

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM- 176
            +FG T+  Q++   RA+EGE+ARTI+++  I +A VHI  P    F +    PTASV+ 
Sbjct: 120 QAFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASVVV 179

Query: 177 -IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIV 234
            +R       K  + I+++V+AAVP L   +V + D +G  L   E  E +++   +   
Sbjct: 180 NVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIKFK 239

Query: 235 QAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293
              +  +E  I + LA F  G+D  + +V  + +   Q+ +  +YDP+  V     L++ 
Sbjct: 240 SDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLNE- 298

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEIN--------TKSI 345
            +R+    PE      Q +P       P    +E  D K +   Y+ N        +K+I
Sbjct: 299 -ERTGRKDPEI-----QGVPGAVSNIGP----VEGLDNKGQIDTYKKNQVTTNNELSKTI 348

Query: 346 ATTHDNY-KLERLSIAVVVNKGRLTEVLGRSADQGK-----IDSYLAEINKIVSAATGIN 399
             T   +  + R S AV ++ G+  +V+  + D            LA +  IV      +
Sbjct: 349 TNTKKQFATVLRTSAAVTID-GKYQDVVDENGDVKSEYVPLTKEELASVESIVKNTINFS 407

Query: 400 SRRGDTITITSMDF 413
           + RGD++ + ++ F
Sbjct: 408 ATRGDSVVVQNLPF 421


>gi|294664059|ref|ZP_06729461.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292606162|gb|EFF49411.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 572

 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 113/466 (24%), Positives = 205/466 (43%), Gaps = 29/466 (6%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
           Q+F    SL  TR L + ++I + +   +A  F+   P Y +LY  L+       +  L 
Sbjct: 19  QWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAADLLR 78

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
            A I ++I     +ISVP   +  AR+ LA  GL    +  G+EL +K   FG++ F++ 
Sbjct: 79  TAQIPYKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQFVEN 138

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYK 186
                ALE E++RTI ++  +  ARVH+ +P   +F +     +ASV+  +R        
Sbjct: 139 ARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQGLERN 198

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN-- 244
             +AI +LVA+++P++    VTV+D +G++L+  +   +    +    Q  + E   N  
Sbjct: 199 QVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESSYNQR 258

Query: 245 INKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           I + L    G          +++    ++ RE+ Y+ +    RS ++S D   S T  P+
Sbjct: 259 IRELLEPMTGPGRVNPETSVDMDFSVVEEAREL-YNGEPAKLRSEQVS-DTSTSATG-PQ 315

Query: 304 SAVTVEQNMP--------------HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
                  N P                +        +      K    NYE++     T  
Sbjct: 316 GPPGATSNSPGQPPAPAVAGAPGTPAAANGQAAAPATPTESSKSATRNYELDRTLQHTRQ 375

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
              +++R+S+AV+++        G+  +Q    + L  I  +V  A G ++ RGDT+++ 
Sbjct: 376 PAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQAVGFDAARGDTVSVM 435

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455
           +  F+   +  +G     + +        V N L  LVG ++V  L
Sbjct: 436 NAPFVREAV--AGEEGPKWWED-----PRVQNGLRLLVGAVVVLAL 474


>gi|251779126|ref|ZP_04822046.1| flagellar M-ring protein FliF [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243083441|gb|EES49331.1| flagellar M-ring protein FliF [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 520

 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 117/417 (28%), Positives = 198/417 (47%), Gaps = 36/417 (8%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           L + FKS +   + +I I  S + V I+  ++   + +S  Y  L+  L+  D   I   
Sbjct: 11  LWEKFKSQSK--KIKIAIFISCVAV-IIAIVSTIIYTSSNKYQVLFSNLDPKDAQTILAK 67

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L+E  +  +I   G +I VP+  V + R+ LA + L S SS  GYEL D  +SFG+T   
Sbjct: 68  LNEQKVTTKIQ--GDTILVPNDKVDQLRLELAPE-LKSGSS--GYELMDSGSSFGMTDEE 122

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS--V 184
            ++ ++R  EGE+ +TI+S S I +ARVHI       F K      A+V +     S   
Sbjct: 123 FKVKKLRMQEGELEKTIKSFSQIESARVHITPSTDSVFVKESTPGKAAVYLELKTGSEIT 182

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-------EMERNILGKSLSIVQAI 237
               ++I  LV+ +  N+   ++ V+D    LLTAN        M    L K  S+ +  
Sbjct: 183 KDQVKSIVALVSGSTENVPKENIEVIDDKMNLLTANLNDDENEMMSSESLDKQYSLEKNY 242

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           + +++  I   L   +G D  ++ V  +L+ D++Q  + V DP+ KV  S +  K+   +
Sbjct: 243 EGKLQKEIVSLLEPVIGKDKVKATVNVDLDFDSKQQTQTVLDPN-KVVVSQQTIKEVNNT 301

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
                 S   V+ N   +S+       +  N+ ++E+++NYEI            +++R+
Sbjct: 302 GADGNISESPVDNN---ISNTTDDTNNTNSNSSREEQKNNYEIGKTETKVISAPGEVKRM 358

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAE-INKIVSAATGINSRRGDTITITSMDF 413
           + +VVV+              G +D+   + I   VS A G NS RGD I++  M+F
Sbjct: 359 TASVVVD--------------GNLDAATQQAIENAVSNAIGFNSVRGDQISVLGMNF 401


>gi|74317106|ref|YP_314846.1| flagellar biosynthesis/type III secretory pathway lipoprotein FliF
           [Thiobacillus denitrificans ATCC 25259]
 gi|74056601|gb|AAZ97041.1| flagellar biosynthesis/type III secretory pathway lipoprotein FliF
           [Thiobacillus denitrificans ATCC 25259]
          Length = 381

 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 96/280 (34%), Positives = 141/280 (50%), Gaps = 23/280 (8%)

Query: 21  RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80
           R L LA +ILVP+    AA  + N P Y  LY +L       +  AL +  I +R+S   
Sbjct: 19  RRLTLALLILVPLGALAAAYIWFNPPAYRVLYGQLSDRVGGEVIGALEQLGIPYRLSAGD 78

Query: 81  SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140
             I VP   +  AR  LAA GLP S ++   ++ ++  SFGL+S  Q+  + RALE E+A
Sbjct: 79  GRIEVPVDTLHVARYRLAALGLPRSDADVEADV-ERAPSFGLSSLQQQQRQQRALEHELA 137

Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLVAA 197
           R+IQS+  +  ARVH+ +P +  F +   R TA+V++R + P    S E    I+ LVAA
Sbjct: 138 RSIQSLEAVELARVHLALPKVSPFLRDAPRATAAVLVR-LRPRAQLSTEQVTTIQTLVAA 196

Query: 198 AVPNLDMGDVTVLDSTGKLL--TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255
           AVP +   DV VLD  G +L   A E+E      SL +  A++ ++       L  +LG 
Sbjct: 197 AVPRMKRADVQVLDPRGVVLGGAAPEIE-----PSLRV--ALEQDLARRALAVLTPWLGA 249

Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
           +     V A L   T +           VER  R++ + Q
Sbjct: 250 ERVSVQVTATLEDATTR---------ETVERMRRVAGEGQ 280


>gi|86149222|ref|ZP_01067454.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|148926414|ref|ZP_01810097.1| flagellar M-ring protein [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|205356032|ref|ZP_03222800.1| flagellar M ring protein [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|218561977|ref|YP_002343756.1| flagellar MS-ring protein [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|85840580|gb|EAQ57837.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|112359683|emb|CAL34469.1| flagellar M-ring protein [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|145844577|gb|EDK21683.1| flagellar M-ring protein [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|205346156|gb|EDZ32791.1| flagellar M ring protein [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|284925590|gb|ADC27942.1| flagellar MS-ring protein [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|315928381|gb|EFV07695.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni
           DFVF1099]
 gi|315930535|gb|EFV09578.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni
           305]
          Length = 560

 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 120/434 (27%), Positives = 210/434 (48%), Gaps = 41/434 (9%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +L Q+ Q +++ T   + RI+I AS+I+V   L   A F  +  + +N Y  L V +V+ 
Sbjct: 6   MLHQIGQLYQNLTR--KQRIVIAASIIVVVGFLVFLALFRGSGSNANNGYAVL-VENVSP 62

Query: 63  ISVA-----LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
            S A     L + NI +++ ++ + I VP   V + R+ +A++GL    S  G+E FD  
Sbjct: 63  SSSAAIVAKLEQNNIPYKL-ESENKILVPQDQVYRQRMFIASEGL-IKDSRVGFEAFD-T 119

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM- 176
            +FG T+  Q++   RA+EGE+ARTI+++  I +A VHI  P    F +    PTASV+ 
Sbjct: 120 QAFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASVVV 179

Query: 177 -IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIV 234
            +R       K  + I+++V+AAVP L   +V + D +G  L   E  E +++   +   
Sbjct: 180 NVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIKFK 239

Query: 235 QAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293
              +  +E  I + LA F  G+D  + +V  + +   Q+ +  +YDP+  V     L++ 
Sbjct: 240 SDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLNE- 298

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEIN--------TKSI 345
            +R+    PE      Q +P       P    +E  D K +   Y+ N        +K+I
Sbjct: 299 -ERTGRKDPEI-----QGVPGAVSNIGP----VEGLDNKGQIDTYKKNQVTTNNELSKTI 348

Query: 346 ATTHDNY-KLERLSIAVVVNKGRLTEVLGRSADQGK-----IDSYLAEINKIVSAATGIN 399
             T   +  + R S AV ++ G+  +V+  + D            LA +  IV      +
Sbjct: 349 TNTKKQFATVLRTSAAVTID-GKYQDVVDENGDVKSEYVPLTKEELASVESIVKNTINFS 407

Query: 400 SRRGDTITITSMDF 413
           + RGD++ + ++ F
Sbjct: 408 ATRGDSVVVQNLPF 421


>gi|284989556|ref|YP_003408110.1| flagellar M-ring protein FliF [Geodermatophilus obscurus DSM 43160]
 gi|284062801|gb|ADB73739.1| flagellar M-ring protein FliF [Geodermatophilus obscurus DSM 43160]
          Length = 527

 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 99/376 (26%), Positives = 185/376 (49%), Gaps = 23/376 (6%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           ++ +P Y  L+  L  +D + I   L+ A   + ++D G +I VP+  V   R+ ++ +G
Sbjct: 44  WITAPTYAPLFSNLASTDASAIVDELNAAGAAYELADGGGTIMVPNEQVYDLRLSMSGKG 103

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP+ + ++GY L D+      + F Q++T  RAL+ E+ART++S+ G+  A VH+ +P+ 
Sbjct: 104 LPAGN-DTGYALLDE-QGITTSEFQQQVTYQRALQDELARTLESLEGVRTAVVHLALPEE 161

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F    A PTASV++     +   S   +A+ +LV++++  +D   VTV D+TG +L+A
Sbjct: 162 EVFASDEAEPTASVLLDLAPGTGLDSGQVQAVTNLVSSSIEGMDPEQVTVADATGAVLSA 221

Query: 220 -NEMERNILGKSLS-IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
             +   +  G + S + Q  +  +  N    L   LG    + +V A++++D    R   
Sbjct: 222 PGQGVTSAAGDARSQLEQDYEARLASNAQAVLDPILGPGRAKVSVRADVDLDQ---RSTT 278

Query: 278 YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSN 337
            +  +  E +  +S+     E +   +AV       + +D       S  N  K+   +N
Sbjct: 279 SETHTYEEGTPPISESTTTEEYTGNGAAVGGILGPENQADAGGGTGDSAYN--KESTTAN 336

Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG 397
             + T          ++ RL+++VV+++          A  G ++   A+I  +V  A G
Sbjct: 337 NAVGTTVETVEGAPGRINRLTVSVVMDE----------AVAGNLNQ--AQIQALVGNAIG 384

Query: 398 INSRRGDTITITSMDF 413
           ++  RGD IT+ SM F
Sbjct: 385 LDVARGDDITVASMAF 400


>gi|254255067|ref|ZP_04948384.1| Flagellar biosynthesis/type III secretory pathway lipoprotein
           [Burkholderia dolosa AUO158]
 gi|124899712|gb|EAY71555.1| Flagellar biosynthesis/type III secretory pathway lipoprotein
           [Burkholderia dolosa AUO158]
          Length = 537

 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 99/360 (27%), Positives = 173/360 (48%), Gaps = 33/360 (9%)

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L    I +RI      + VP S +G  R+ LAA+G+  +   +G +  DK +  G++ F+
Sbjct: 72  LETEGIPYRIHPESGQVLVPESQLGATRMLLAAKGV-VAKLPAGLDQVDKSDPLGVSQFV 130

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINPSVY 185
           Q++   R LEGE+ R+I S+  + +ARVH+ +    SF    G + +ASV++        
Sbjct: 131 QDVRFRRGLEGELVRSIVSVEPVESARVHLSVAKSSSFILADGDKSSASVVLTLKQGRTL 190

Query: 186 KSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEM 243
           K  +  AI  LVA +V NLD   VTV+D  G  L+A     +           I+ E   
Sbjct: 191 KKDQISAIVALVAGSVANLDPSRVTVVDQAGNHLSALIDPDSAAATDGEFGARIREETLR 250

Query: 244 NINKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
           NI + L   LG  NFR++V AE++ D  ++ RE   D       + ++ ++A R E    
Sbjct: 251 NIRELLLPTLGDGNFRASVTAEIDHDRVEETRERYGD-------TPKVMQEATRDERDGA 303

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSN-----YEINTKSIATTHDNYKLERL 357
           ++AV V  ++   S+R +  P + +  D ++   N     +  +   +       +L+RL
Sbjct: 304 QAAVGVPGSL---SNRPIAPPAASQTADAQQSGRNAQTRQFAYDRNVVKIKRSPARLKRL 360

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAE----INKIVSAATGINSRRGDTITITSMDF 413
           ++AVV+N          +A  G   ++  E    I+ ++    GI+  R D + ++++DF
Sbjct: 361 NVAVVINN---------AAAPGGAKAWTPEQIERIDAVLRNGLGIDGARDDALVVSALDF 411


>gi|89072278|ref|ZP_01158857.1| flagellar M-ring protein [Photobacterium sp. SKA34]
 gi|89051810|gb|EAR57262.1| flagellar M-ring protein [Photobacterium sp. SKA34]
          Length = 582

 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 108/389 (27%), Positives = 186/389 (47%), Gaps = 39/389 (10%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           + +S +Y  LY + E  D   I   L    I +R+ +    + V  S V K R+ LAA+G
Sbjct: 62  WSSSQNYRPLYGQQERFDSGEIISVLETEGIPYRLQEANGQVLVAESEVAKIRMLLAAKG 121

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           + +    +G +   + +S G + FM+       LEGE+ RTI ++  I  ARVH+ +P  
Sbjct: 122 IKAKLP-TGLDSLKEDSSLGTSQFMETARYRHGLEGELVRTIIALDAIANARVHLAIPRK 180

Query: 162 GSFRKIGAR-PTASVMIRAINPS---VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
             F +  A  PTASVM+  + P      +  EAI +LV  +V  +   +V+V+D  G+LL
Sbjct: 181 TLFVRHNAEAPTASVMVE-LKPGEDLKTEQVEAIINLVTGSVTGMKTENVSVVDQYGRLL 239

Query: 218 TAN----EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQ 272
           +A+    EM + +  K L   + +++++       L   +G  N+R  V A+L+    Q+
Sbjct: 240 SADIGSAEMGK-VNAKYLDYQKNLENQVIQRAADMLTPIVGPSNYRVQVAADLDFSHVQE 298

Query: 273 IREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332
            +E+V         S  + K+  R E +   S   +   +P     K P+    EN D K
Sbjct: 299 TKEVV--------DSTPVVKNEHRIENN---SIDNIALGVPGSLSNKPPVTGEEENKDSK 347

Query: 333 EEQSNYEINTK---SIATTHDNY---KLERLSIAVVVNKGRLTEVLGRSADQGK--IDSY 384
                 EIN +     +  H  Y   KL +L+++V++N          +A  GK   ++ 
Sbjct: 348 NTNERTEINRQYALGSSVRHTQYQQGKLNKLNVSVLLN--------STAAPNGKAWTEAE 399

Query: 385 LAEINKIVSAATGINSRRGDTITITSMDF 413
             +I+ ++  A GI++ RGD+++I S +F
Sbjct: 400 TQQISNMIKDAVGISADRGDSLSILSFNF 428


>gi|119947167|ref|YP_944847.1| flagellar MS-ring protein [Psychromonas ingrahamii 37]
 gi|119865771|gb|ABM05248.1| flagellar M-ring protein FliF [Psychromonas ingrahamii 37]
          Length = 582

 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 108/408 (26%), Positives = 195/408 (47%), Gaps = 33/408 (8%)

Query: 27  SVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVP 86
           +V L  ++  +    + +S +Y  LY   E  + + I  AL   NI +++  +   I V 
Sbjct: 66  TVFLTALVTILVILLWSSSSNYRPLYGIQEPYNNSDILAALEAENIKYQMQPDTGLILVE 125

Query: 87  SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146
              V K R+ LAA+G+ ++    G  +  K ++ G + F++       LEGE+A+TI S+
Sbjct: 126 DGEVAKIRMLLAAKGVKATLP-EGLSVLGKQSALGTSQFIENARYNLGLEGELAKTIMSL 184

Query: 147 SGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLD 203
           + I  ARVH+ +P    F   G    TA+VM+   +      A+  +I +LVA +V NL+
Sbjct: 185 NAINNARVHLAIPKENLFVGRGDNIATAAVMLDVKSGDKLSVAQITSIMNLVAGSVNNLN 244

Query: 204 MGDVTVLDSTGKLLT--ANEMERNIL-GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRS 260
              V++ D +G+LL+   N+ E ++   K L     I+ +I+      L   LG +NFR 
Sbjct: 245 PESVSITDQSGRLLSDDVNDGEYSLASSKQLEYKAGIEQQIKKQAKSMLIPILGENNFRI 304

Query: 261 AVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNM---PHVSD 317
              A+++   +Q     +D    +   + +  D       Q + A+ +  ++   P V D
Sbjct: 305 ESAADIDFSKKQETMERFDATPVLLSEMSIEDD------DQSDIAIGIPGSLSSTPPVVD 358

Query: 318 RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK-----GRLTEVL 372
            +   P + +   ++E    Y + +    T +   K+  +S++VV+NK     G  T   
Sbjct: 359 GQESTPNNSKKKLRRELNRKYAVGSSVTHTEYQQGKINHISLSVVINKDIAPDGEWT--- 415

Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
              AD+      L++IN ++S+A G++  RGD+I +TS  F   Q+ N
Sbjct: 416 ---ADE------LSKINAMISSAVGLDLNRGDSINVTSFTFSPIQVTN 454


>gi|255022056|ref|ZP_05294062.1| Flagellar M-ring protein fliF [Acidithiobacillus caldus ATCC 51756]
 gi|254968542|gb|EET26098.1| Flagellar M-ring protein fliF [Acidithiobacillus caldus ATCC 51756]
          Length = 599

 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 175/372 (47%), Gaps = 38/372 (10%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           R R+ IL  + LV +   +     V+   Y  +Y  L       +  AL +  I FR+ D
Sbjct: 24  RQRLTILGGIALV-LAASLGIGEAVSHTSYAVVYSGLSPQTGGSVIAALQKGGIPFRLLD 82

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           NG+ I VP +   + R+ LA QGLP+ ++++ +         G +SF++  T +RALE  
Sbjct: 83  NGNVIEVPKADAARVRLQLAEQGLPAQATSALWHQLQN-EKLGTSSFVEHTTYIRALEAG 141

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195
           +++ I+SI G+ AA V++ +P+   F +    P A+V ++ + P +  + E    I HLV
Sbjct: 142 LSKDIESIQGVEAATVNLAIPNRTPFLERMPSPKAAVTLK-LAPGMMLTQEQVYGITHLV 200

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFL-- 253
           A++VP L  G VTV+D  G+ LTA        G   S +  +Q  +E    K +   L  
Sbjct: 201 ASSVPGLKAGSVTVVDQYGRALTAKPT-----GSQSSAILRLQQRVESAYRKQIVDLLAP 255

Query: 254 ---GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS---------- 300
              G  N R AV A +++   Q   + Y     V  ++  S+    + +S          
Sbjct: 256 IVGGKRNLRVAVDANIDLSHTQKSFVTYGMGHVVTAAVESSRTKGSASSSTFGIPGALSN 315

Query: 301 ----QPESAVTVEQN--MPHVSDRKVP--LPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
                P++ +T       P ++ +++   +PRS     +  ++ +Y ++     T  + +
Sbjct: 316 QPPGNPQAPITAPATSAAPGLTLQEIRAMIPRS----SQANQRFHYVLDKTVGFTKGEPW 371

Query: 353 KLERLSIAVVVN 364
           +L  LS++V++N
Sbjct: 372 RLTSLSVSVLIN 383


>gi|296133049|ref|YP_003640296.1| flagellar M-ring protein FliF [Thermincola sp. JR]
 gi|296031627|gb|ADG82395.1| flagellar M-ring protein FliF [Thermincola potens JR]
          Length = 517

 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 105/400 (26%), Positives = 188/400 (47%), Gaps = 39/400 (9%)

Query: 33  IMLFMAARFFVNS----------PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           I++ ++A F V +          P Y  L+ +L+  D  +    L E  I ++++D G++
Sbjct: 25  IVIIVSALFLVGTLAVLVRGATRPDYAPLFTQLDPQDAGKTVEWLKENKIPYQLADGGTT 84

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VPS  V + RI L+++G P+     G+E FD+   FG T   +    +RAL+GE+ RT
Sbjct: 85  ILVPSKDVDQTRISLSSEGYPTGGV-VGFEAFDQ-TKFGETDTDRRARFIRALQGELTRT 142

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIR---HLVAAAV 199
           I+  S +  ARVHIV+P+   F +     TA+V ++ + P+       ++    LVA +V
Sbjct: 143 IERFSEVDKARVHIVLPEPSLFLEEQKNATAAVWLQ-LKPTKTLDENQVKGLVKLVANSV 201

Query: 200 PNLDMGDVTVLDSTGKLLT-----ANEMERNILGKS-LSIVQAIQHEIEMNINKALAAFL 253
             L   +VTV+D  G +L+     + E ++  L  + L I +  Q +++ ++   L   +
Sbjct: 202 EGLSPENVTVVDMNGNILSESLDFSKEAQQQKLSMTQLEIQKTFQADLQRSLQSMLEKVV 261

Query: 254 GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP 313
           G+      V AEL+ D  Q +   Y  D  V    +  + +  S T+ P++      N+P
Sbjct: 262 GIGKVVCRVRAELDFDQIQKKTENYG-DKHVLSEQKTEQSSSSSNTATPQNTPGTAGNIP 320

Query: 314 HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373
                         ++D      NY  + +    T     ++RLS++V+++K        
Sbjct: 321 GYVATGGNSNSQSSSSDVVR---NYVHDKEETVQTVAPGSVKRLSVSVMIDK-------- 369

Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
            + +Q +  +    I + V  A GIN  RGD +++  M F
Sbjct: 370 -AINQQQQKA----IEEAVVNAAGINRDRGDQVSVIGMPF 404


>gi|58582224|ref|YP_201240.1| flagellar MS-ring protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84624117|ref|YP_451489.1| flagellar MS-ring protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188576784|ref|YP_001913713.1| flagellar MS-ring protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188576976|ref|YP_001913905.1| flagellar MS-ring protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58426818|gb|AAW75855.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84368057|dbj|BAE69215.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188521236|gb|ACD59181.1| flagellar M-ring protein FliF [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188521428|gb|ACD59373.1| flagellar M-ring protein FliF [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 574

 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 128/569 (22%), Positives = 250/569 (43%), Gaps = 38/569 (6%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
           Q+F   +SL  TR L + ++I + +   +A  F+   P Y +LY  L+       +  L 
Sbjct: 19  QWFDRVSSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAADLLR 78

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
            A I ++I     +ISVP   +  AR+ LA  GL    +  G+EL +K   FG++ F++ 
Sbjct: 79  TAQIPYKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQFVEN 138

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYK 186
                ALE E++RTI ++  +  ARVH+ +P   +F +     +ASV+  +R        
Sbjct: 139 ARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQGLERN 198

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN-- 244
             +AI +LVA+++PN+    VTV+D +G++L+  +   +    +    Q  + E   N  
Sbjct: 199 QVDAIVNLVASSIPNITPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESSYNQR 258

Query: 245 INKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           I + L    G          +++    ++ RE+ Y+ +    RS +++  +  +  + P+
Sbjct: 259 IRELLEPMTGPGRVNPETSVDMDFSVVEEAREL-YNGEPAKLRSEQVNDTS--TTATGPQ 315

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE-------- 355
                  N P                    + +     T+S  +   NY+L+        
Sbjct: 316 GPPGATSNSPGQPPAPAAAGAPGTPAAANGQATAAAAPTESSKSATRNYELDRTLQHTRQ 375

Query: 356 ------RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
                 R+S+AV+++        G+  +Q    + L  I  +V  A G ++ RGDT+++ 
Sbjct: 376 PAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQAVGFDAARGDTVSVM 435

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL--GL--HALRRLHN 465
           +  F+   +  +G     + +        V N L  LVG L+V  L  G+    LR+L  
Sbjct: 436 NAPFVREAV--AGEEGPKWWED-----PRVQNGLRLLVGALVVLALLFGVVRPTLRQLTG 488

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
           +   K+ +  G +  +P     +    ++ +++  L    +D  S  +  +  I    + 
Sbjct: 489 VTPIKEKQRKGGNDGTP----QSADVRMVDDEDSLLPHMGEDTASIGQERKPAIALPDAY 544

Query: 526 QSDLRLL-HMIEINEERFAKILRKWARSE 553
           +  +R+    ++ + +R A++++ W  SE
Sbjct: 545 EERMRVAREAVKADSKRVAQVVKGWVASE 573


>gi|103488413|ref|YP_617974.1| flagellar M-ring protein FliF [Sphingopyxis alaskensis RB2256]
 gi|98978490|gb|ABF54641.1| flagellar M-ring protein FliF [Sphingopyxis alaskensis RB2256]
          Length = 551

 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 108/391 (27%), Positives = 184/391 (47%), Gaps = 36/391 (9%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
           A F + +     L+  L+ +D   ++ AL    I   I     +++V +  + +ARI LA
Sbjct: 58  AYFTMQTAPQAQLFAGLDDADKAAVAEALQAQGIGHSIDGTTGALTVDADKLHQARIALA 117

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
            QGLP ++  SG  L   +      +   E  R  A E +++RTI++I  + +ARVHI  
Sbjct: 118 GQGLPKAAP-SGDSLIAALPMGSSRAIEGEALR-SAREADLSRTIETIDAVKSARVHIAA 175

Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
            +   F +     TASVM+   N         +AIR LVA++VP ++   V+V+D  G L
Sbjct: 176 AEPSLFVRDDKPATASVMLTLQNGRALGDGQVQAIRFLVASSVPGMNADQVSVIDQRGAL 235

Query: 217 LTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM-DTQQIRE 275
           L+      ++  K+  +   ++      ++  L   LG  N+   V A+++M ++Q  RE
Sbjct: 236 LSDTASGSDM--KAFQLQLQVEDRFRRALDTLLGPMLGAGNYTVEVHADVDMSESQATRE 293

Query: 276 IVYDPD-----SKVERSIRLSKDAQR-----SETSQPESAVTVEQNMPHVSDRKVPLPRS 325
              + D      ++ RS+  + +A       +  +QP  A T+    P  +    PLP +
Sbjct: 294 SFPENDRALTSEQITRSVSGTANAPAVGIPGALANQPPQATTITAEGPQPAPANAPLPGT 353

Query: 326 LENTDKKEEQSNYEINTKSIATTHD-NYKLERLSIAVVVNKGR--LTEVLGRSADQGKID 382
             N +       YE+  + I+ TH    KL R+S+AV +N+G+  LT+     AD     
Sbjct: 354 ESNENAARA---YEVG-REISVTHSPQGKLRRVSVAVALNQGKKALTQ-----AD----- 399

Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDF 413
             LA+I+ +V  A G ++ RGD + I    F
Sbjct: 400 --LAKIDALVKGAIGYDAARGDMVAINQRPF 428


>gi|28211331|ref|NP_782275.1| flagellar MS-ring protein [Clostridium tetani E88]
 gi|28203771|gb|AAO36212.1| flagellar M-ring protein fliF [Clostridium tetani E88]
          Length = 521

 Score =  114 bits (284), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 111/387 (28%), Positives = 186/387 (48%), Gaps = 45/387 (11%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +++ P Y  L+  +E  D+  +   L ++  +F++  +G++I VP   V   R+ + +Q 
Sbjct: 43  YISKPKYAILFSNMEQEDMGTVYNKLKDSKENFKV--DGNTILVPREKVDSLRMEVMSQ- 99

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           +P  + ++G+EL DK N FG T    +I   RAL+GEI RTI+    I  ARVH+VMP+ 
Sbjct: 100 VPIKNGSNGFELLDK-NKFGATEEEMKINYQRALQGEIERTIKGFPEIENARVHLVMPED 158

Query: 162 GSFRKIGARPTASVMIRAINPSVYKS-----AEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
             F K      AS+ ++ I P  YK       +AI  L + +V NL   +V + D T ++
Sbjct: 159 SVFIKDDTPAKASITLK-IKP--YKKITDNQVKAIVALASGSVKNLPKENVEIND-TNQI 214

Query: 217 LTANEMERNILGKSLSI--VQAIQHE----IEMNINKALAAFLGVDNFRSAVVAELNMDT 270
           LT +  + +    S SI   QA++ E    +E  +   L A  G +  +  + A+LN D 
Sbjct: 215 LTKDLFKEDEFDSSESIQKQQALKKEYEKTLEDKVTSMLEAVYGKERAKIKINADLNFDA 274

Query: 271 QQIREIVYDPDSKV--ERSIRLSKDAQRSETSQPESAVTVEQNMPHVS--DRKVPLPRSL 326
            Q    +YDP + V  E+++   K+              V+ NM + +  + K  L    
Sbjct: 275 IQDESTIYDPKNVVVSEKNV---KETTPGGNDLATGGSPVDDNMRNRAGNNEKDALVTHE 331

Query: 327 ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLA 386
           EN        NYE++ +   T      + RL+++VV++ G L     R+A          
Sbjct: 332 ENV------RNYEVSERKNKTLRAPGSVRRLTVSVVLD-GNLDNAT-RNA---------- 373

Query: 387 EINKIVSAATGINSRRGDTITITSMDF 413
            +   V +A G N +RGDTI++  + F
Sbjct: 374 -VQNTVKSAVGYNEQRGDTISVEGLPF 399


>gi|239826613|ref|YP_002949237.1| flagellar MS-ring protein [Geobacillus sp. WCH70]
 gi|239806906|gb|ACS23971.1| flagellar M-ring protein FliF [Geobacillus sp. WCH70]
          Length = 527

 Score =  114 bits (284), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 107/418 (25%), Positives = 186/418 (44%), Gaps = 26/418 (6%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L +   F+K  T   + + + +AS+ L  +++   A +F     +  LY  L   +  +I
Sbjct: 9   LSRFTLFWKERTK--KQKWIAIASLALF-LLITGVAIYFATRTEFAPLYSNLTPQEAGQI 65

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L +  +   ++DNG++I VP  +V   ++ LAA+G+P+S +   Y  F K  SFG+T
Sbjct: 66  KATLDQRGVKSEVADNGTTIKVPKELVNSLKVDLAAEGIPNSGT-IDYSYFGKNASFGMT 124

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
                + ++ A++ E+A  I+SI G+  A+V I +P    F        ++ ++    P 
Sbjct: 125 DNEFNVVKLEAMQNELANLIKSIDGVEDAKVMINLPQPSVFASDDQGEASASIVLKTKPG 184

Query: 184 VYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240
              S + IR   HLV+ +VPNL   ++ +++   +       E    G + +  Q I+ +
Sbjct: 185 YQFSDQQIRALYHLVSKSVPNLPTDNIVIMNQFFEYFDLKNNENFSTGTTFATQQEIKKQ 244

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMD---TQQIRE--IVYDPDSKVERSIRLS---- 291
           IE +I + +   LG    +  VV  +  D   TQ+ RE  +V   D K    I +S    
Sbjct: 245 IERDIQRQVQQMLGTMMGQDKVVVSVTADVDFTQENREENLVAPVDEKNNEGIAVSVQRI 304

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           K+    + +QP       +N   V   +     +  + ++ EE  N E+N          
Sbjct: 305 KETYSGKGAQPGGVAGTGEN--EVPSYQAGASETNGDYERTEETINNEVNKIKKHIVESP 362

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSA--ATGINSRRGDTIT 407
           YK+  L I V+V           S  Q  ID    +I KI+     T IN + G T+T
Sbjct: 363 YKIRDLGIQVMVEPPNPKN--PNSLPQQTID----DIQKILGTIVRTSINKQDGQTLT 414


>gi|289666081|ref|ZP_06487662.1| flagellar MS-ring protein [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 574

 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 130/569 (22%), Positives = 251/569 (44%), Gaps = 38/569 (6%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
           Q+F    SL  TR L + ++I + +   +A  F+   P Y +LY  L+       +  L 
Sbjct: 19  QWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAADLLR 78

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
            A I ++I     +ISVP   +  AR+ LA  GL    +  G+EL +K   FG++ F++ 
Sbjct: 79  TAQIPYKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQFVEN 138

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYK 186
                ALE E++RTI ++  +  ARVH+ +P   +F +     +ASV+  +R        
Sbjct: 139 ARYQHALETELSRTISTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQGLERN 198

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN-- 244
             +AI +LVA+++P++    VTV+D +G++L+  +   +    +    Q  + E   N  
Sbjct: 199 QVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESSYNQR 258

Query: 245 INKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           I + L    G          +++    ++ RE+ Y+ +    RS +++  +  +  + P+
Sbjct: 259 IRELLEPMTGPGRVNPETSVDMDFSVVEEAREL-YNGEPAKLRSEQVNDTS--TTATGPQ 315

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE-------- 355
                  N P                    + +     T+S  +   NY+L+        
Sbjct: 316 GPPGATSNSPGQPPAPAAAGAPGTPAAANGQATAAAAPTESSKSATRNYELDRTLQHTRQ 375

Query: 356 ------RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
                 R+S+AV+++        G+  +Q    + L  I  +V  A G ++ RGDT+++ 
Sbjct: 376 PAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQAVGFDAARGDTVSVM 435

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL--GL--HALRRLHN 465
           +  F+   +  +G     + +        V N L  LVG ++V  L  G+    LR+L  
Sbjct: 436 NAPFVREAV--AGEEGPKWWED-----PRVQNGLRLLVGAVVVLALLFGVVRPTLRQLTG 488

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
           +   K  +  GK+     P S+ V   ++  D+  L    +D  S  ++ ++ I    + 
Sbjct: 489 VTAVKDKQ--GKAGKDGTPQSADVR--MVDEDDELLPHMGEDTASIGQDRKTPIALPDAY 544

Query: 526 QSDLRLL-HMIEINEERFAKILRKWARSE 553
           +  +R+    ++ + +R A++++ W  SE
Sbjct: 545 EERMRVAREAVKADSKRVAQVVKGWVASE 573


>gi|20807889|ref|NP_623060.1| flagellar biosynthesis/type III secretory pathway lipoprotein
           [Thermoanaerobacter tengcongensis MB4]
 gi|20516454|gb|AAM24664.1| Flagellar biosynthesis/type III secretory pathway lipoprotein
           [Thermoanaerobacter tengcongensis MB4]
          Length = 503

 Score =  113 bits (283), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 127/470 (27%), Positives = 220/470 (46%), Gaps = 57/470 (12%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +QLL F+       + ++ ++A ++ + I L +   +  N P+Y  LY  L + D   + 
Sbjct: 10  EQLLNFWNKFDKKQKIQLTVIAILVFISISLLV---YIANRPNYVVLYSNLSLKDAGIVV 66

Query: 65  VAL-SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV-NSFGL 122
             L S+  + +++SDNG++I VP+    + R+ LA +G+P      G+   D + NS   
Sbjct: 67  EKLKSDFKVPYKLSDNGTTILVPAQYKDEIRMKLATEGIPQ----GGFSFQDAMNNSLST 122

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMIR-- 178
           T   +    +  ++ EI  ++++I G+  A V+IV+PD  +F       + TA+VM+   
Sbjct: 123 TDQERRQKYLYFVQNEIQNSLKTIEGVQDAIVNIVVPDQNAFVLSNTTNQATAAVMLTLK 182

Query: 179 ---AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ 235
               + PS  K    I   V+ +V  L   +VTV+DSTGK+LT    E + + ++ S   
Sbjct: 183 PGATLTPSQVK---GIIDFVSKSVEGLKPENVTVIDSTGKILTP---ESDSIAENASNQF 236

Query: 236 AIQHEIEMNINKALAAFL----GVDNFRSAVVAELNMDTQQIREIVYDP----DSK-VER 286
           A+Q +++ ++  +L   L    G  N        LN D +    I Y P    D+K + R
Sbjct: 237 ALQKKVQEDLQNSLQTLLEQVFGPGNVVVRANVRLNFDKKTEDRIEYTPVQGNDNKGIVR 296

Query: 287 SIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSI 345
           S++ L + A  +++  P    T   N P V +++     +  + DK E   NYEIN    
Sbjct: 297 SVQELKEKATGTQSGSPPGQPT---NNPPVYNQQ---NNNTSSYDKTETTINYEINQIKT 350

Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
                  K+E +S+AVVVNK      L  S  Q        +I  +V+ A G N+ +   
Sbjct: 351 TLVEAQGKIESISVAVVVNKP-----LNASMQQ--------QIADLVANAAGGNNVK--- 394

Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455
           +++  + F ++ L  +   Q      +  +   +I AL   VG  LV FL
Sbjct: 395 VSVQGIPFNQD-LLKAMQAQKKVAQGMPIYLWGIIAALA--VGGGLVAFL 441


>gi|307699904|ref|ZP_07636955.1| flagellar M-ring protein FliF [Mobiluncus mulieris FB024-16]
 gi|307614942|gb|EFN94160.1| flagellar M-ring protein FliF [Mobiluncus mulieris FB024-16]
          Length = 536

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 106/392 (27%), Positives = 187/392 (47%), Gaps = 59/392 (15%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +V  P Y  L+  L   D   ++  L    I ++++DNG  + VPS+ + +AR+ LAA  
Sbjct: 44  WVGRPSYTVLFSGLTEKDQAAVTQQLDATGIKYQVADNGI-VKVPSNDIQRARMDLAANN 102

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP+  + +GY + D +     + F Q++ + RALEGE+A+TI S+  I  + V + +P  
Sbjct: 103 LPAEPT-TGYAVLDNL-GVAASDFQQQMAKKRALEGELAKTINSMDVIEKSSVALAIPAE 160

Query: 162 GSFRKIGARPTASVMIRAINPSVYK-----SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
             F     +P A+     + P   +     + +AI ++V+A++PNL  G V+V+D+ G  
Sbjct: 161 TVFADP-KKPVATTASVTVEPKKGREVDNNTVQAIVNMVSASIPNLAKGGVSVVDTAGNT 219

Query: 217 LT---------ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELN 267
           L+         A E E++++ K+L++V+ +               +GV N + +   EL 
Sbjct: 220 LSDKVSAGSAAATETEKSLVAKALAMVEPL---------------VGVGNAKVSAHVELA 264

Query: 268 MDTQQIREIVY-DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSL 326
            +T+Q    VY DP+  V+   +LS  ++ SE      AV      P      +  P  L
Sbjct: 265 QETEQKTTRVYTDPEGGVK---QLSS-SKASENYSGSGAVVAGVLGPD----NIGNPYEL 316

Query: 327 ENTDKKEEQSNYEINTKSI-----ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI 381
            N +  + ++N  +N  ++      TT         +I+VV+N     +   R  D    
Sbjct: 317 RNGNGGKYENNQTVNNNAVNEELTNTTRSPGAAMSKTISVVLN-----QETARRLD---- 367

Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
              + ++   V+AATGIN+ RGD I ++   F
Sbjct: 368 ---MTQVRDSVAAATGINAARGDVINVSRAPF 396


>gi|332799173|ref|YP_004460672.1| flagellar M-ring protein FliF [Tepidanaerobacter sp. Re1]
 gi|332696908|gb|AEE91365.1| flagellar M-ring protein FliF [Tepidanaerobacter sp. Re1]
          Length = 519

 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 103/401 (25%), Positives = 189/401 (47%), Gaps = 50/401 (12%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92
           IML++ +R     P Y  LY  L++SD   I   L + NI + + D G +I V      K
Sbjct: 39  IMLYLISR-----PKYVPLYTNLDISDAGEIVKKLDDLNISYELEDGGKTILVDPEQKYK 93

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
            R+ LA +GLP S+S+   E+F+K    G T + +++   +AL+GE+ + I+ +  + +A
Sbjct: 94  TRLTLAQEGLPKSNSSGFDEMFNKT-RLGTTDWERQVQYNQALQGELTKAIEMMESVESA 152

Query: 153 RVHIVMPDMGSFRKIGA--RPTASVMIRAINPSVYKSAEAIR---HLVAAAVPNLDMGDV 207
           RV+IV  +   F +  +   P+A++ +  + P    + E I    +LV  +V N+   +V
Sbjct: 153 RVYIVQQEKSLFIEPDSNYEPSAAIFLE-VKPGAQMTKEEIMGIINLVTYSVKNMKQENV 211

Query: 208 TVLDSTGKLL-----TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAV 262
            V+D  GK L     + +E    ++   L I    Q++++ ++   L    G  N    V
Sbjct: 212 VVVDQYGKTLSNAAISQSEDNEELINNQLVIQDNFQNQLQASVQSLLEQIFGPGNVAVRV 271

Query: 263 VAELNMDTQQIREIVYDPDSK-----VERSIRLSKDAQRSETSQPESAVTVEQNMPHVSD 317
            A+LN D + ++  ++ P ++     + RSI+  K+              V+ N+P  + 
Sbjct: 272 NAKLNFDKKIVQNKLFAPVNEETGEGIVRSIQELKEHFSGTGGAYGGTPGVDSNVPGYNQ 331

Query: 318 RKVPLPRSLENTDKKEEQ-----SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372
            +         T + E+Q      N+EIN  +   T     +++L+++VV+N        
Sbjct: 332 TQ---------TGESEQQRSEVIRNFEINETNENLTVAPGAVDKLTVSVVIN-------- 374

Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
            +  +  + DS    I ++V  A G +  R D I+I  M+F
Sbjct: 375 -QELNDAEKDS----ITQVVGNAIGYDPER-DQISIEGMEF 409


>gi|167626144|ref|YP_001676438.1| flagellar MS-ring protein [Shewanella halifaxensis HAW-EB4]
 gi|167356166|gb|ABZ78779.1| flagellar M-ring protein FliF [Shewanella halifaxensis HAW-EB4]
          Length = 572

 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 152/586 (25%), Positives = 256/586 (43%), Gaps = 90/586 (15%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
           QF +         IL + +  ++ +ML+   +       Y  LY   E  + + I   L 
Sbjct: 31  QFSRGDRHAATLAILAIVAACVIVLMLWSTGQ------GYSPLYGNQENVETSHIIEVLE 84

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
              I +R+      I VP   VG AR+ LAA+G+  +   SG E  D  ++ G + FM++
Sbjct: 85  AEGISYRLDPTSGLILVPEDRVGNARMVLAARGV-KAKVPSGMESLDS-SAIGTSQFMEQ 142

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMI-----RAINP 182
                +LEGE++RTI ++  +  ARVH+ +P    F R+    P+ASVM+     + + P
Sbjct: 143 AKYRYSLEGELSRTIMALKSVKTARVHLAIPKKTLFIRQQPELPSASVMLDLYAGQHLQP 202

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQ 238
               S   I +LVA +V  +    V ++D  G  L+    AN+       K L   Q ++
Sbjct: 203 EQITS---IANLVAGSVTGMTPERVQIVDQEGNHLSSEINANQDLTQARDKQLQYTQELE 259

Query: 239 HEIEMNINKA---LAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPDSKVERSIRLSKDA 294
             +   IN+A   L   LG DNF+  V A +N +  ++ RE + DP + V      S++ 
Sbjct: 260 QSL---INRASSMLQPILGQDNFQVQVAALVNFNQVEETRESL-DPQTVV------SQEK 309

Query: 295 QRSETSQPESAVTVE---QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           Q +  +  + A+ +     N P  +D       S  N +++E +  +E+      T +  
Sbjct: 310 QSTNQTSGDMALGIPGALSNQPPTADAAT--NNSTSNLNQQESR-QFEVGRSVKHTRYQQ 366

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
            +LE LSI+V++N     E        G     L +++ +V  A G ++ RGD  +I+S 
Sbjct: 367 MQLENLSISVLLNNQAAGET-------GWTQPQLDQMSTMVQDAIGYSAARGDQFSISS- 418

Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINA-LVFLVGTLLVTFLGLHALRRL------- 463
                  FN   V+++  + L         A L + +G +L   +    LR L       
Sbjct: 419 -------FNFAPVKIAEFEPLPWWQGESYQAYLRYFIGAILGLGMIFFVLRPLVQHLTRT 471

Query: 464 --HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPN------DN-IALDSSN-QDIFSHSR 513
             HNI D     +     L PP  + A T  L  +      DN +AL+++N    ++ + 
Sbjct: 472 VEHNIKDT----LPSTQPLMPP--AEAATAHLSQDAAQEAADNLVALNNANINSNWTSNL 525

Query: 514 NLQSRINSYVSKQSDLRLLHMIEINEE--RFAKILRKWARSEIEDR 557
           NL +  +    +   L LL     N+E  R A+++  W    I DR
Sbjct: 526 NLPAPGSPLTVQMEHLSLL----ANQEPARVAEVISHW----ISDR 563


>gi|260779317|ref|ZP_05888209.1| flagellar M-ring protein FliF [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605481|gb|EEX31776.1| flagellar M-ring protein FliF [Vibrio coralliilyticus ATCC BAA-450]
          Length = 556

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 102/378 (26%), Positives = 182/378 (48%), Gaps = 29/378 (7%)

Query: 48  YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           Y  LY + E  D   I   L    I++R+ +    + VP   V + R+ LAA+G+  +  
Sbjct: 44  YRPLYSQQERFDTGEIVSVLESEGINYRLQEQNGQVLVPEGEVARIRMLLAAKGV-KAKL 102

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RK 166
            +G +   + +S G + FM+       LEGE+ RTI S++ +  ARVH+ +P    F R+
Sbjct: 103 PTGLDSLKEDSSLGTSQFMETARYRHGLEGELIRTIISLNAVSNARVHLAIPRQTLFVRQ 162

Query: 167 IGARPTASVMIRAINPS---VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--- 220
               P+ASVM+  + P      +  EAI +L+  +V  +    V+V+D  G+LL+A+   
Sbjct: 163 NSEAPSASVMLE-LKPGEDLKPEQVEAIINLIVGSVTGMKPEQVSVIDQYGRLLSADVAS 221

Query: 221 EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM-DTQQIREIVYD 279
                +  K L   + ++ +I    +  L   +G  NFR  V A+L+    ++ +EI+ +
Sbjct: 222 AEAGKVNAKYLEYQKNVEKQIIQRASDMLTPIVGPSNFRVQVAADLDFSQVEETQEILDN 281

Query: 280 -PDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPHVSDRKVPLPRSLENTDKKEEQ 335
            P  + E +I        S  S  + A+ V     N P V+  +VP   S     + E  
Sbjct: 282 TPIVRNEHTI--------SNNSIDQIALGVPGTLSNQPPVTG-EVPTQDSQNTNARSEVN 332

Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395
             Y + +    T +   ++E+LS++V++N+         +AD+       A+I+ +V+ A
Sbjct: 333 RQYAVGSSVRRTHYQQGQIEKLSVSVLLNEAAAPNGTAWTADEK------AQISTMVTDA 386

Query: 396 TGINSRRGDTITITSMDF 413
            GI + RGD++++ S  F
Sbjct: 387 VGIAADRGDSLSLMSFSF 404


>gi|223038711|ref|ZP_03609004.1| flagellar M-ring protein FliF [Campylobacter rectus RM3267]
 gi|222880113|gb|EEF15201.1| flagellar M-ring protein FliF [Campylobacter rectus RM3267]
          Length = 564

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 129/474 (27%), Positives = 215/474 (45%), Gaps = 57/474 (12%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLE---VSDVNRISVALSEANIDFR 75
           R R++   S++LV   L   + +  ++  YD   V  E    +D   I   L +  + ++
Sbjct: 20  RQRLVAAGSIVLVVGFLVFLSIYKSSNEGYDGYSVLFENTSAADSALIIQQLEKDKVKYK 79

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135
           I + G+ I VP+S V + RI +A+ G+       G+E+FDK   FG T   Q++   RAL
Sbjct: 80  ILNEGT-ILVPNSDVYRERISIASLGI-LKDGKVGFEIFDK-QEFGATDAEQKVKFQRAL 136

Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEA 190
           EGE+ARTI+S++ I  A V I +P    F +    P+AS+++     +++N    K    
Sbjct: 137 EGELARTIESLAPINKAIVRIAIPKETLFTERATPPSASIVLNLKDGQSLN---LKQIAG 193

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI------QHEIEMN 244
           I++LVAAAV NL    V ++   G  L   + E +    S  I Q I      +H +E  
Sbjct: 194 IKNLVAAAVANLKPEQVKIVSQDGVPLGEEDGEYD----SDQITQQIRYKRDAEHNLEEK 249

Query: 245 INKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           I   L+  + G D   + V  + +   +  +   +DP+S       + +  Q S+ ++ +
Sbjct: 250 IINVLSPIVGGADKVVAKVTIDFDFARKDSQSESFDPNSVARSEQNIEEKRQGSKEAEVQ 309

Query: 304 SAVTVEQNMPHVS---DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSI 359
                  N+  V    D K+      E   K    +NYEI +K +    D + K++RLS 
Sbjct: 310 GVPGAVSNIGPVEGLQDNKMK-----ELYSKSSSTTNYEI-SKKVERVKDQFAKIKRLSA 363

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSY-------LAEINKIVSAATGINSRRGDTITITSMD 412
           AVVV+ G+       + +  K  +Y       LA I+ ++  A   +  RGD IT+++ +
Sbjct: 364 AVVVD-GKYENKKDENGNPTKEIAYVPLDENQLARIDALIRQAICFDQNRGDEITVSNFE 422

Query: 413 FLE----------NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456
           F            N  F      V F+ IL   FA V+  L      ++V F+ 
Sbjct: 423 FQRQDGQTPASKVNSFFE--LYVVPFLPILKYLFAAVL--LYIFYKKVIVPFMA 472


>gi|227876739|ref|ZP_03994848.1| flagellar M-ring protein FliF [Mobiluncus mulieris ATCC 35243]
 gi|306817686|ref|ZP_07451428.1| flagellar M-ring protein FliF [Mobiluncus mulieris ATCC 35239]
 gi|227842636|gb|EEJ52836.1| flagellar M-ring protein FliF [Mobiluncus mulieris ATCC 35243]
 gi|304649500|gb|EFM46783.1| flagellar M-ring protein FliF [Mobiluncus mulieris ATCC 35239]
          Length = 536

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 104/392 (26%), Positives = 183/392 (46%), Gaps = 59/392 (15%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +V  P Y  L+  L   D   ++  L    I ++++DNG  + VPS+ + +AR+ LAA  
Sbjct: 44  WVGRPSYTVLFSGLTEKDQAAVTQQLDATGIKYQVADNGI-VKVPSNDIQRARMDLAANN 102

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP+  + +GY + D +     + F Q++ + RALEGE+A+TI S+  I  + V + +P  
Sbjct: 103 LPAEPT-TGYAVLDNL-GVAASDFQQQMAKKRALEGELAKTINSMDVIEKSSVALAIPAE 160

Query: 162 GSFRKIGARPTASVMIRAINPSVYK-----SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
             F     +P A+     + P   +     + +AI ++V+A++PNL  G V+V+D+ G  
Sbjct: 161 TVFAD-PKKPVATTASVTVEPKKGREVDNNTVQAIVNMVSASIPNLAKGGVSVVDTAGNT 219

Query: 217 LT---------ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELN 267
           L+         A E E++++ K+L++V+ +               +GV N + +   EL 
Sbjct: 220 LSDKVSAGSAAATETEKSLVAKALAMVEPL---------------VGVGNAKVSAHVELA 264

Query: 268 MDTQQIREIVY-DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSL 326
            +T+Q    VY DP+  V       K    S+ S+  S            D  +  P  L
Sbjct: 265 QETEQKTTRVYTDPEGGV-------KQLSSSKASENYSGGGAVVGGVLGPDN-IGNPYEL 316

Query: 327 ENTDKKEEQSNYEINTKSI-----ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI 381
            N +  + ++N  +N  ++      TT         +I+VV+N     +   R  D    
Sbjct: 317 RNGNGGKYENNQTVNNNAVNEELTNTTRSPGAAMSKTISVVLN-----QETARRLD---- 367

Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
              + ++   V+AATGIN+ RGD I ++   F
Sbjct: 368 ---MTQVRDSVAAATGINAARGDVINVSRAPF 396


>gi|304321127|ref|YP_003854770.1| flagellar M-ring protein FliF [Parvularcula bermudensis HTCC2503]
 gi|303300029|gb|ADM09628.1| flagellar M-ring protein FliF [Parvularcula bermudensis HTCC2503]
          Length = 485

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 115/406 (28%), Positives = 183/406 (45%), Gaps = 32/406 (7%)

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L E  + + I  +GS+I VP     + R+ LA  G+P +   +GYE+ D +N F  TS M
Sbjct: 45  LDEMAVPYTI--DGSAIYVPEGERDRLRLELARLGMPPAG-GAGYEILDDLNGFSTTSDM 101

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
            +    RA EGE+ RTI +I  + AARVH+ +    +FR+     +ASV + A       
Sbjct: 102 FDAAYWRAKEGELTRTILAIPTVTAARVHLGVTRQSAFRRARLDKSASVTVEASGGLSKS 161

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE--IEMN 244
            A++I++L A AVP L    V V+D+   ++          G    +   I  E  +   
Sbjct: 162 QAQSIQYLTALAVPELRPESVAVIDTARGVIAGP----GATGDESPMGDEIDREDRLASR 217

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK--VERSIRLSKDAQRSETSQP 302
           +   L A +G  N R +V  +++  +   +E V DPDS+  V RSI    DA+    S  
Sbjct: 218 LTHLLEAHVGPGNARVSVAMDIDRQSIAQKERVIDPDSRQIVSRSISEESDAE----SDA 273

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTD-KKEEQSNY---EINTKSIATTHDNYKLERLS 358
           +  VT+  N+P     + P          +++E+  Y   EI  + I T     +  RLS
Sbjct: 274 DIPVTIASNLPDGDAAEDPEEAGTRLVKRRRDEEVTYTGTEIE-RVIETAAGTVR--RLS 330

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF--LEN 416
           +AV++N+       G +    +    +  +  +V+ A GI   RGD + I  + F   E 
Sbjct: 331 VAVLLNERYTVNEEGETVPAPRSPEEVEALETLVANAAGIEDERGDRLAIRVLPFEGEEP 390

Query: 417 QLFNS-GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461
           QL  + G V+   M          ++   F V  LLV  +    LR
Sbjct: 391 QLVTAPGFVEAHVM-------PRAVDIAQFSVLALLVASIAFFVLR 429


>gi|269976266|ref|ZP_06183262.1| flagellar M-ring protein FliF [Mobiluncus mulieris 28-1]
 gi|269935595|gb|EEZ92133.1| flagellar M-ring protein FliF [Mobiluncus mulieris 28-1]
          Length = 536

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 104/392 (26%), Positives = 183/392 (46%), Gaps = 59/392 (15%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +V  P Y  L+  L   D   ++  L    I ++++DNG  + VPS+ + +AR+ LAA  
Sbjct: 44  WVGRPSYTVLFSGLTEKDQAAVTQQLDATGIKYQVADNGI-VKVPSNDIQRARMDLAANN 102

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP+  + +GY + D +     + F Q++ + RALEGE+A+TI S+  I  + V + +P  
Sbjct: 103 LPAEPT-TGYAVLDNL-GVAASDFQQQMAKKRALEGELAKTINSMDVIEKSSVALAIPAE 160

Query: 162 GSFRKIGARPTASVMIRAINPSVYK-----SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
             F     +P A+     + P   +     + +AI ++V+A++PNL  G V+V+D+ G  
Sbjct: 161 TVFAD-PKKPVATTASVTVEPKKGREVDNNTVQAIVNMVSASIPNLAKGGVSVVDTAGNT 219

Query: 217 LT---------ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELN 267
           L+         A E E++++ K+L++V+ +               +GV N + +   EL 
Sbjct: 220 LSDKVSAGSAAATETEKSLVAKALAMVEPL---------------VGVGNAKVSAHVELA 264

Query: 268 MDTQQIREIVY-DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSL 326
            +T+Q    VY DP+  V       K    S+ S+  S            D  +  P  L
Sbjct: 265 QETEQKTTRVYTDPEGGV-------KQLSSSKASENYSGGGAVVGGVLGPDN-IGNPYEL 316

Query: 327 ENTDKKEEQSNYEINTKSI-----ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI 381
            N +  + ++N  +N  ++      TT         +I+VV+N     +   R  D    
Sbjct: 317 RNGNGGKYENNQTVNNNAVNEELTNTTRSPGAAMSKTISVVLN-----QETARRLD---- 367

Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
              + ++   V+AATGIN+ RGD I ++   F
Sbjct: 368 ---MTQVRDSVAAATGINAARGDVINVSRAPF 396


>gi|90577381|ref|ZP_01233192.1| flagellar M-ring protein [Vibrio angustum S14]
 gi|90440467|gb|EAS65647.1| flagellar M-ring protein [Vibrio angustum S14]
          Length = 581

 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 107/388 (27%), Positives = 183/388 (47%), Gaps = 37/388 (9%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           + +S +Y  LY + E  D   I   L    I +R+ +    + V    V K R+ LAA+G
Sbjct: 62  WSSSQNYRPLYGQQERFDSGEIISVLETEGIPYRLQEANGQVLVAEGEVAKIRMLLAAKG 121

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           + +    +G +   + +S G + FM+       LEGE+ RTI ++  I  ARVH+ +P  
Sbjct: 122 IKAKLP-TGLDSLKEDSSLGTSQFMETARYRHGLEGELVRTIIALDAIANARVHLAIPRK 180

Query: 162 GSFRKIGAR-PTASVMIRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
             F +  A  PTASVM+        K+   EAI +LV  +V  +   +V+V+D  G+LL+
Sbjct: 181 TLFVRHNAEAPTASVMVELKPGEDLKTDQVEAIINLVTGSVTGMKTENVSVVDQYGRLLS 240

Query: 219 AN----EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQI 273
           A+    EM + +  K L   + ++ ++       L   +G  N+R  V A+L+    Q+ 
Sbjct: 241 ADIGSSEMGK-VNAKYLDYQKNLEKQVIQRAADMLTPIVGPSNYRVQVAADLDFSHVQET 299

Query: 274 REIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKE 333
           +E+V         S  + K+  R E +   S   +   +P     K P+    EN D K 
Sbjct: 300 KEVV--------DSTPVVKNEHRIENN---SIDNIALGVPGSLSNKPPVTGEEENKDSKN 348

Query: 334 EQSNYEINTK---SIATTHDNY---KLERLSIAVVVNKGRLTEVLGRSADQGK--IDSYL 385
                EIN +     +  H  Y   KL +L+++V++N          +A  GK   ++  
Sbjct: 349 TNERTEINRQYALGSSVRHTQYQQGKLNKLNVSVLLNS--------TAAPNGKAWTEAET 400

Query: 386 AEINKIVSAATGINSRRGDTITITSMDF 413
            +I+ ++  A GI++ RGD+++I S +F
Sbjct: 401 QQISNMIKDAVGISADRGDSLSILSFNF 428


>gi|54307259|ref|YP_128279.1| flagellar MS-ring protein [Photobacterium profundum SS9]
 gi|46911679|emb|CAG18477.1| Hypothetical FliF Flagellar M-ring transmembrane protein
           [Photobacterium profundum SS9]
          Length = 560

 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 109/432 (25%), Positives = 202/432 (46%), Gaps = 48/432 (11%)

Query: 3   ILDQLLQFFKSGTSLGR----TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           ++ Q L    S +++GR    TR+++L  +I   +   +    +  +  Y  LY + E  
Sbjct: 4   LMKQRLSNMASPSAMGRLLTGTRLIVLLGLIAALVTTAVVIGLWQGNSQYRPLYGEQEKF 63

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
           D +++   L +  +D+ I     ++ V    VGKAR+ LAA G+  +   +G ++  + +
Sbjct: 64  DRSQVISVLEQQGMDYYIEPQQGNVMVDRDSVGKARLALAAAGI-EAQLPAGLDILSQDS 122

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMI 177
           S G + F++       LEGE+A +I ++  I   RVH+ +P    F R+   +P+ASV++
Sbjct: 123 SLGTSQFIESARYRHGLEGELALSIMALDAISNVRVHLAIPKKTLFVRREKEQPSASVVL 182

Query: 178 RAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-----NEMERNILGKS 230
              +     + +  AI +LVA +VP+L+   V V+D  G+LL++      +  RN     
Sbjct: 183 SLSSGRELTTEQVTAIVNLVAGSVPDLNAERVNVIDQKGRLLSSVINREGKHSRNS-SSY 241

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290
           L  VQ ++        + L   +G+DNF+  V A++N D  +  E  Y PD  V      
Sbjct: 242 LEYVQKLEQSYIKRAARMLRPMVGIDNFQVEVAADINYDRTEATEESYAPDGSV------ 295

Query: 291 SKDAQRSETSQPESAV-TVEQNMPHVSDRKVPLPRSLENTDKKEEQS----NYEINTKSI 345
                R+E S  +  +    Q +P     + P     E+ +   E+S    +Y ++    
Sbjct: 296 -----RNEFSTIDRRIGKAAQGVPGALSNRPPEDGEEEDPNAGNERSESSRDYALDRVLK 350

Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY----LAEINKIVSAATGINSR 401
            T +   +++ LS+++++N              G+ D++    LA I ++++ A GIN  
Sbjct: 351 HTLYQQGQVKSLSVSILLN--------------GQPDTFPPEQLANIKQMLADAIGINEV 396

Query: 402 RGDTITITSMDF 413
           RGD  +I    F
Sbjct: 397 RGDQFSILVYPF 408


>gi|323705446|ref|ZP_08117021.1| flagellar M-ring protein FliF [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535348|gb|EGB25124.1| flagellar M-ring protein FliF [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 502

 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 116/465 (24%), Positives = 206/465 (44%), Gaps = 51/465 (10%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           I +Q+  F+       + +I I+A +++  I L +   + +N P+Y+ LY  L   D   
Sbjct: 8   IREQIDNFWNKFDKKQKIQIGIIALLLIGSIALLL---YILNRPNYEVLYSGLSTKDAGT 64

Query: 63  ISVAL-SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV-NSF 120
           +   L +E  I ++I  +GS+I VP+    +AR+ LA +G+P      G+   D + NS 
Sbjct: 65  VVDKLKNELKIPYKIEGDGSTILVPAQYKDEARMQLATEGIPQ----DGFSFSDAMNNSL 120

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMIR 178
             T   +    +  ++ EI  T+++I G+  A+V+IV+PD  +F         TA+VM++
Sbjct: 121 ATTDQERREKYIYFVQNEIQNTLKTIDGVQDAKVNIVVPDQSNFVLSNSDNSSTAAVMLQ 180

Query: 179 AINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIV 234
            + P V    +    I + V+ +V  L    VT++D  GK+L A N+   +      ++ 
Sbjct: 181 -LKPGVTLTNQQINGITNFVSKSVQGLSPDKVTIIDGNGKVLVAQNDSSLDGASSQYALQ 239

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLS 291
             +Q++++ NI   L    G  N        LN D Q   ++ + P   ++ + RS +  
Sbjct: 240 MKVQNDLQNNIQSLLEQVFGPGNVIVRASVNLNFDKQVQDKVEWQPVIDNNGIIRSTQTI 299

Query: 292 KD-AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
           K+ A  S    P    T   N P  S           +  K +   NYEIN      T  
Sbjct: 300 KEIANGSSNGAPAGTAT---NNPPGSTTYTTQNNGNSSYSKTDTTINYEINQIKTTLTSA 356

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
             K++ +S++VVVN   LT  + +            ++  +VS A G     G  ++++ 
Sbjct: 357 QGKIQNISLSVVVNNSNLTPAMKQ------------QLTDLVSNAAG-----GKNVSVSV 399

Query: 411 MDF-----LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL 450
           M       L NQ+ N+G     ++      +  ++ ALV   G  
Sbjct: 400 MGIKFNNDLLNQMKNNGKQSFPYV------WLIILGALVLAGGVF 438


>gi|251772444|gb|EES53011.1| flagellar M-ring protein FliF [Leptospirillum ferrodiazotrophum]
          Length = 530

 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 120/429 (27%), Positives = 196/429 (45%), Gaps = 43/429 (10%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110
           LY  L  +D   IS  L    I +     G+ I VP   V   R+ LA  GLP     +G
Sbjct: 52  LYSHLSPTDSFEISQKLDRMGISYDTDAKGTEIRVPKKQVYMLRMQLADDGLPRHH-GAG 110

Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170
           + +F+   S   T F+Q +  ++AL+ E+ RTI+ +S I  ARV IV+P    F +    
Sbjct: 111 FAIFNH-PSLTTTDFVQHVQYLQALQSELDRTIEEMSPIALARVSIVLPRRSVFLRHQKG 169

Query: 171 PTASVMIRAINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL 227
             ASV++R + P    S   ++   HLVA +V  L    VTV+D+TG +L  NE    ++
Sbjct: 170 AHASVLVR-LKPGRSLSRAQVKGVVHLVANSVEGLTPDHVTVVDNTGTIL--NEKHPGLI 226

Query: 228 GKSLSIVQ-----AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI--VYDP 280
              L+  Q      ++H +   +   L   LG    ++ V     +D +++ E   +YDP
Sbjct: 227 PGELTKAQLAYQAMVEHRLRNRVQSMLDQVLG--EGQAVVRVNATLDFRRVEETRELYDP 284

Query: 281 DSKVERSIRLSKDAQRSETSQ-----PESAVTVEQNMPHVSDRKV---PL-PRSLENTD- 330
             +      LS+  +  E S      P     V  N+P  S+ KV   PL P+    T  
Sbjct: 285 KGRA-----LSEREKLREKSSGTRIVPVGVPGVLSNVPG-SNGKVASPPLGPKDGTQTKY 338

Query: 331 -KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSAD----QGKIDSYL 385
            KK++  +Y+++            + R+S++V+VN G+   V G++ +    + +    L
Sbjct: 339 SKKKDIEHYDVSHTMSHIVLPTGTVSRISVSVLVN-GKTRTVTGKTGETQIYEPRTPEEL 397

Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445
           A   +IV  A G ++ RGDT+ + S+ F        G  Q   M    + F  ++   +F
Sbjct: 398 ASFTRIVQNAIGFDATRGDTVVVDSVPFAAAA--PEGKTQEVRMAERLKPFMPLLE--IF 453

Query: 446 LVGTLLVTF 454
           L G L++ F
Sbjct: 454 LGGLLVLVF 462


>gi|304316908|ref|YP_003852053.1| flagellar M-ring protein FliF [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778410|gb|ADL68969.1| flagellar M-ring protein FliF [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 505

 Score =  110 bits (276), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 164/347 (47%), Gaps = 22/347 (6%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVAL-SEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
           + +N P+Y+ LY  L V D   +   L +E  I ++I  NGS+I VP+    +ARI LA 
Sbjct: 43  YIINRPNYEVLYSDLSVKDAGAVVDKLKNELKIPYKIEGNGSTILVPAQYKDEARIQLAT 102

Query: 100 QGLPSSSSNSGYELFDKV-NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
           +G+P      G+   D + NS   T   ++   +  ++ EI  T+++I G+  A+V+IV+
Sbjct: 103 EGIPQ----DGFSFSDAMNNSLATTDQERKQKYIYFVQNEIQNTLKAIDGVQDAKVNIVV 158

Query: 159 PDMGSF--RKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDST 213
           PD  +F         TA+VM++ + P V    +    I + V+ +V  L    VT++D  
Sbjct: 159 PDENNFVLSNNDNSSTAAVMLQ-LKPGVTLTNQQINGITNFVSKSVEGLSPDKVTIIDGN 217

Query: 214 GKLLTANEMERNILGKS--LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ 271
           GK+L A + + ++ G S   ++   +Q++++ NI   L    G  N        LN D Q
Sbjct: 218 GKVLVA-QNDNSLDGASSQYALQMKVQNDLQNNIQSLLEQVFGPGNVIVRASVNLNFDKQ 276

Query: 272 QIREIVYDP---DSKVERSIRLSKD-AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE 327
              ++ + P   ++ + RS +  K+ A  S    P    T   N P  S           
Sbjct: 277 VQDKVEWQPVIDNNGIIRSTQTIKEIANGSSNGAPAGTAT---NNPPGSTTYTTQNNGNS 333

Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR 374
           N  K +   NYEIN      T    K++ +S++VVVN   L+  + +
Sbjct: 334 NYSKTDTTINYEINQIKTTLTSAQGKIQNISLSVVVNNNNLSPTMKQ 380


>gi|167630289|ref|YP_001680788.1| flagellar m-ring protein flif, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167593029|gb|ABZ84777.1| flagellar m-ring protein flif, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 511

 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 103/366 (28%), Positives = 173/366 (47%), Gaps = 32/366 (8%)

Query: 17  LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76
           L R + LIL   ++  I+   A  +    P Y  L+  L+ +D   I   L E  +DF++
Sbjct: 4   LSRQQKLILGGSLVAIIVSLAAFVYLAGRPDYVPLFQNLDPADAGAIQAKLKEQKVDFQV 63

Query: 77  SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136
           S++G +I VPS      RI LA  GLP   +  G+E F++ + FG T   +EI    A E
Sbjct: 64  SEDGKTILVPSKDQASLRIELANSGLP-KGTGWGFETFNE-SRFGETEKEKEIRLKIATE 121

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIR---H 193
            E++RT+Q+I G+  ARV IV      F+      TASVM+  + P      + IR   H
Sbjct: 122 TELSRTLQNIPGVENARVMIVPATDSLFKGNATDATASVML-ILKPYATLEEKQIRGIIH 180

Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLT--------ANEMERNILGKS-LSIVQAIQHEIEMN 244
           LV+ +V  L   +VTV+D+TG +L+        ++++  + L K+ L + +  +  +E  
Sbjct: 181 LVSRSVKQLKPENVTVVDNTGNVLSEGLFTAGGSDKVNLDGLAKAQLQMKKDFEASLEQK 240

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
               L   LG  N    V  EL+   Q+++++       V  S R +++A +  T     
Sbjct: 241 AQDMLNRALGAGNAVVKVSTELDFSQQEVKDVKL--GKPVPLSTRETEEAGQGSTG---- 294

Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEIN-----TKSIATTHDNYKLERLSI 359
                   P  S   +P  ++  N      +++  +N     T++   T     L+RLS+
Sbjct: 295 -----SGTPGTS-ANIPTQQATNNNTSSYSKTDSIVNNEIPKTETHTVTPPGSSLKRLSV 348

Query: 360 AVVVNK 365
           +V+VN+
Sbjct: 349 SVMVNR 354


>gi|57506034|ref|ZP_00371957.1| flagellar M-ring protein FliF [Campylobacter upsaliensis RM3195]
 gi|57015642|gb|EAL52433.1| flagellar M-ring protein FliF [Campylobacter upsaliensis RM3195]
          Length = 560

 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 113/438 (25%), Positives = 201/438 (45%), Gaps = 43/438 (9%)

Query: 41  FFVNSPHYDNLYVKL----EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIH 96
            F N P   N YV L      S    I   L +  + +R+ +N S+I VP   V + ++ 
Sbjct: 41  LFRNGPAGSNGYVPLIENANPSTAGAIVTRLEQNGVPYRL-ENESTILVPQDQVNRQKMF 99

Query: 97  LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHI 156
           +A++GL    +  G+E+FDK   FG TS  +++   RAL+GEIAR I+++  I +A V +
Sbjct: 100 IASEGL-IKDNRVGFEVFDK-QIFGATSAEEKVRAQRALQGEIARIIETLEPIRSASVIL 157

Query: 157 VMPDMGSFRKIGARPTASVMIRAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTG 214
            +P    F +    PTASV I   +      K  + ++++VAA+VP L   +V + D  G
Sbjct: 158 ALPKESVFTERQIPPTASVTINIKDGFRLTRKQIDGVKNIVAASVPRLTKENVKISDQNG 217

Query: 215 KLLTANEMERN-ILGKSLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQ 272
             L   ++E   +L   +   +  + E+E  I  +LA F  G D  + +V  E +   Q+
Sbjct: 218 NTLDEQQLESGEVLAMQIRYKRDSERELEEKIINSLAPFAGGRDKLQVSVNIEYDFSKQE 277

Query: 273 IREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT--- 329
            +  +YDP++ V     L++  +++    PE      Q +P       P+   L N    
Sbjct: 278 SKSEIYDPNTVVRSEQTLNE--EKTGRKDPEI-----QGVPGAVSNIGPV-EGLANNGVI 329

Query: 330 ---DKKEEQSNYEINTKSIATTHDNYKLE-RLSIAVVVNKGRLTEVLGRSADQGKIDS-- 383
               K +  +N EI +K+I  T  ++ +  R+S AV ++ G+  +V+    + G++ S  
Sbjct: 330 DSYKKNQVTTNNEI-SKTITNTQKSFGVPLRISAAVTID-GKYEDVVD---ENGEVKSEY 384

Query: 384 ------YLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437
                  L  +  IV      N+ RGD++ + ++ F    +     V+        R   
Sbjct: 385 VPLPQAQLNGVESIVRNTINFNAARGDSVVVQNLPFYRESI----KVESKVKTFYGRFIE 440

Query: 438 TVINALVFLVGTLLVTFL 455
             I  + + +  +L+ F 
Sbjct: 441 PFIPPVKYFIAAILLFFF 458


>gi|157959913|ref|YP_001499947.1| flagellar MS-ring protein [Shewanella pealeana ATCC 700345]
 gi|157844913|gb|ABV85412.1| flagellar M-ring protein FliF [Shewanella pealeana ATCC 700345]
          Length = 566

 Score =  110 bits (275), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 125/492 (25%), Positives = 222/492 (45%), Gaps = 64/492 (13%)

Query: 22  ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81
           + I+A+ ++V +ML+ A++       Y  LY   E  + ++I   L    I +RI  N  
Sbjct: 44  LAIVAACVIV-LMLWSASQ------GYRPLYGNQEGVETSQIIEVLEAEGISYRIDANSG 96

Query: 82  SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
            I V    +G AR+ LAA+G+  +   SG E  +  N  G + FM++     +LEGE++R
Sbjct: 97  LILVTEDKLGPARMLLAARGV-KAKVPSGMESLENSN-IGTSQFMEQAKYRYSLEGELSR 154

Query: 142 TIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRA-----INPSVYKSAEAIRHLV 195
           TI ++  +  ARVH+ +P    F R+    PTASVM+       I P   +  E+I +LV
Sbjct: 155 TIMALKAVKTARVHLAIPKKTLFIRQQPELPTASVMLELYAGSNIQP---EQIESIVNLV 211

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTAN-EMERNIL---GKSLSIVQAIQHEIEMNINKALAA 251
           A +V  +    V V+D  G  L+++  + ++I     + L   Q ++  +    +  L  
Sbjct: 212 AGSVTGMTPDRVQVVDQEGNHLSSSISVNKDITQARDRQLKYTQELEQSLIDRASSMLLP 271

Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311
            LG D+F   V A +N +  +  +   DP + V      +K+   S  +  + A+ +   
Sbjct: 272 ILGRDHFEVQVAANVNFNQVEETKESLDPLAVV------TKENLTSNETNSDMALGI--- 322

Query: 312 MPHVSDRKVPLPRSLENTDKK----EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367
            P     + P   + E+  ++    +E   ++       T +   +LE LS++V++NK  
Sbjct: 323 -PGALSNQPPAAEADESNARRNLNSQESRQFDTGRSVRHTRYQQMQLENLSVSVLINKQS 381

Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL-------FN 420
             E        G   + L +++ +V  A G ++ RGD  +I S DF   Q+       + 
Sbjct: 382 AGET-------GWTQTQLDQLSSMVQDAIGFSAARGDQFSINSFDFAPTQIAEFEPMPWW 434

Query: 421 SGTVQVSFMDILSRHF--ATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
            G    +++    R+F  A +  A++F V   LV  L       L +ID+  +  +    
Sbjct: 435 QGESYQTYL----RYFIGALLGLAMIFFVLRPLVKHLTKTVEHNLKSIDEPAQPSL---- 486

Query: 479 ILSPPPISSAVT 490
               PP  + VT
Sbjct: 487 ----PPAQATVT 494


>gi|315638805|ref|ZP_07893977.1| flagellar M-ring protein FliF [Campylobacter upsaliensis JV21]
 gi|315481023|gb|EFU71655.1| flagellar M-ring protein FliF [Campylobacter upsaliensis JV21]
          Length = 564

 Score =  110 bits (275), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 113/438 (25%), Positives = 201/438 (45%), Gaps = 43/438 (9%)

Query: 41  FFVNSPHYDNLYVKL----EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIH 96
            F N P   N YV L      S    I   L +  + +R+ +N S+I VP   V + ++ 
Sbjct: 45  LFRNGPAGSNGYVPLIENANPSTAGAIVTRLEQNGVPYRL-ENESTILVPQDQVNRQKMF 103

Query: 97  LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHI 156
           +A++GL    +  G+E+FDK   FG TS  +++   RAL+GEIAR I+++  I +A V +
Sbjct: 104 IASEGL-IKDNRVGFEVFDK-QIFGATSAEEKVRAQRALQGEIARIIETLEPIRSASVIL 161

Query: 157 VMPDMGSFRKIGARPTASVMIRAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTG 214
            +P    F +    PTASV I   +      K  + ++++VAA+VP L   +V + D  G
Sbjct: 162 ALPKESVFTERQIPPTASVTINIKDGFRLTRKQIDGVKNIVAASVPRLTKENVKISDQNG 221

Query: 215 KLLTANEMERN-ILGKSLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQ 272
             L   ++E   +L   +   +  + E+E  I  +LA F  G D  + +V  E +   Q+
Sbjct: 222 NTLDEQQLESGEVLAMQIRYKRDSERELEEKIINSLAPFAGGRDKLQVSVNIEYDFSKQE 281

Query: 273 IREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT--- 329
            +  +YDP++ V     L++  +++    PE      Q +P       P+   L N    
Sbjct: 282 SKSEIYDPNTVVRSEQTLNE--EKTGRKDPEI-----QGVPGAVSNIGPV-EGLANNGVI 333

Query: 330 ---DKKEEQSNYEINTKSIATTHDNYKLE-RLSIAVVVNKGRLTEVLGRSADQGKIDS-- 383
               K +  +N EI +K+I  T  ++ +  R+S AV ++ G+  +V+    + G++ S  
Sbjct: 334 DSYKKNQVTTNNEI-SKTITNTQKSFGVPLRISAAVTID-GKYEDVVD---ENGEVKSEY 388

Query: 384 ------YLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437
                  L  +  IV      N+ RGD++ + ++ F    +     V+        R   
Sbjct: 389 VPLPQAQLNGVESIVRNTINFNAARGDSVVVQNLPFYRESI----KVESKVKTFYGRFIE 444

Query: 438 TVINALVFLVGTLLVTFL 455
             I  + + +  +L+ F 
Sbjct: 445 PFIPPVKYFIAAILLFFF 462


>gi|254478876|ref|ZP_05092240.1| flagellar M-ring protein FliF [Carboxydibrachium pacificum DSM
           12653]
 gi|214035189|gb|EEB75899.1| flagellar M-ring protein FliF [Carboxydibrachium pacificum DSM
           12653]
          Length = 506

 Score =  110 bits (274), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 125/469 (26%), Positives = 214/469 (45%), Gaps = 52/469 (11%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +QLL F+       + ++ ++A ++ + I L +   +  N P+Y  LY  L + D   + 
Sbjct: 10  EQLLNFWNKFDKKQKIQLTVIAILVFISISLLV---YIANRPNYVVLYSNLSLKDAGIVV 66

Query: 65  VAL-SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV-NSFGL 122
             L SE  + +++SDNG++I VP+    + R+ LA +G+P      G+   D + NS   
Sbjct: 67  EKLKSEFKVPYKLSDNGTTILVPAQYKDEIRMKLATEGIPQ----GGFSFQDAMNNSLST 122

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMIR-- 178
           T   +    +  ++ EI  ++++I G+  A V+IV+PD  +F       + TA+VM+   
Sbjct: 123 TDQERRQKYLYFVQNEIQNSLKTIEGVQDAVVNIVVPDQNAFVLSNTTNQATAAVMLTLK 182

Query: 179 ---AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ 235
               + PS  K    I   V+ +V  L   +VTV+DSTGK+LT    E + + ++ S   
Sbjct: 183 PGATLTPSQVK---GIIDFVSKSVEGLKPENVTVIDSTGKILTP---ESDSIAENASNQF 236

Query: 236 AIQHEIEMNINKALAAFL----GVDNFRSAVVAELNMDTQQIREIVYDP----DSK-VER 286
           A+Q +++ ++  +L   L    G  N        LN D +    I Y P    D+K + R
Sbjct: 237 ALQKKVQEDLQNSLQTLLEQVFGPGNVVVRANVRLNFDKKTEDRIEYTPVQGNDNKGIVR 296

Query: 287 SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346
           S++  K+  ++  +Q  S        P           +  + DK E   NYEIN     
Sbjct: 297 SVQELKE--KATGTQNGSPTGTASTTPPGGGALSTQSNNTSSYDKTETTINYEINQIKTT 354

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
                 K+E +S+AVVVNK      L  S  Q        +I  +V+ A G N+ +   +
Sbjct: 355 LVEAQGKIESISVAVVVNKP-----LNASMQQ--------QIADLVANAAGGNNVK---V 398

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455
           ++  + F ++ L  +   Q      +  +   +I AL   VG  LV FL
Sbjct: 399 SVQGIPFNQD-LLKAMQAQKKVAQGMPLYLWGIIAALA--VGGGLVAFL 444


>gi|157961189|ref|YP_001501223.1| flagellar MS-ring protein [Shewanella pealeana ATCC 700345]
 gi|157846189|gb|ABV86688.1| flagellar M-ring protein FliF [Shewanella pealeana ATCC 700345]
          Length = 566

 Score =  110 bits (274), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 107/428 (25%), Positives = 199/428 (46%), Gaps = 32/428 (7%)

Query: 14  GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73
           G  + R   +ILA  I + + +F+    +   P Y  L  ++  +++ ++  AL +  + 
Sbjct: 32  GVDMLRQLTMILALAICLAVAVFVM--IWAQEPEYRPLG-QMSTAEMVQVLDALDKNQVK 88

Query: 74  FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
           + I   G  + VP       ++ L+ +GL +  +N+ +   +K + FG++  M++     
Sbjct: 89  YEI--QGDVVKVPEDKYQDVKMLLSREGLDNQEANNDF--LNKDSGFGVSQRMEQARLKH 144

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV-YKSAEAIR 192
           + E  +AR I+ +  +  A+V + +P    F +  ++P+A+V++      +  +  ++I 
Sbjct: 145 SQEQNLARVIEELKSVTRAKVILALPRENVFARNRSKPSATVVVSTRRSGLSQEEVDSIV 204

Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNINKALA 250
            +VA+AV NL+   VTV D+ G+LL +   +    I  + L IVQ  + E    +   L 
Sbjct: 205 DIVASAVHNLEPNKVTVTDANGRLLNSGTQDGASAIARRELEIVQQKESEYRTKVESILM 264

Query: 251 AFLGVDNFRSAVVAELNMDTQQIREIV--YDPDSKVERSIRLSKDAQRSETS-------- 300
             LG +NF S V  +++MD   + +    Y+PD    RS  + ++     TS        
Sbjct: 265 PILGPENFTSQV--DVSMDFTAVEQTAKRYNPDLPALRSEMVVENNSAGGTSGGIPGALS 322

Query: 301 -QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
            QP  A  + Q +       V        T  KE   N+E+NT    T      L R+S+
Sbjct: 323 NQPPMAADIPQEVNAEESLAVS-----SGTSHKEATRNFELNTTISHTRQQVGTLRRVSV 377

Query: 360 AVVVN--KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           +V V+   G ++E  G      + +  LA I +++  A G N++RGD I + S+ F+ +Q
Sbjct: 378 SVAVDFKNGPVSED-GSVNRVPRTEQELANIRRLLEGAVGFNTQRGDIIEVVSVPFM-DQ 435

Query: 418 LFNSGTVQ 425
           L      Q
Sbjct: 436 LIEDAPPQ 443


>gi|328469325|gb|EGF40271.1| flagellar MS-ring protein [Vibrio parahaemolyticus 10329]
          Length = 571

 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 111/436 (25%), Positives = 199/436 (45%), Gaps = 40/436 (9%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           + +S  +  LY + E  D+  I   L    + +R+ +    + VP   V + R+ LA++G
Sbjct: 52  WSSSQSFRPLYSQQERFDIGEIVSVLESEGVSYRMQEQNGQVLVPEGEVARIRMLLASKG 111

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           +  +   +G +   + +S G + FM+       LEGE+ RTI S++ +  ARVH+ +P  
Sbjct: 112 V-KAKLPTGLDSLKEDSSLGTSQFMETARYRHGLEGELVRTIMSLNSVANARVHLAIPRQ 170

Query: 162 GSF-RKIGARPTASVMIRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
             F R+ G  P+ASVM+        KS   EAI +L+  +V  +    V+V+D  G+LL+
Sbjct: 171 TLFVRQNGENPSASVMLELKPGEDLKSEQVEAIINLIVGSVTAMKPEFVSVIDQYGRLLS 230

Query: 219 AN---EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           A+        +  K L   + ++ +I       L   +G  NFR  V A  +MD  Q+ E
Sbjct: 231 ADVASAEAGKVNAKYLEYQKNVEKQIIQRAADMLTPIVGPSNFRVQVAA--DMDFSQVEE 288

Query: 276 IVYDPDSKVERSIRLSKDAQRSE-TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEE 334
                     R I  +    R+E T Q  S   +   +P     + P+       D +  
Sbjct: 289 T---------REILDNAPVVRNEHTIQNNSIDQIALGVPGSLSNQPPVTGDAATNDSQNT 339

Query: 335 QSNYEINTKSIA------TTHDNYKLERLSIAVVVN-KGRLTEVLGRSADQGKIDSYLAE 387
            +  E+N +         T +   ++E+LS++V++N K     V    AD+       A+
Sbjct: 340 NARSEVNRQYAVGSSVRRTQYQQGQIEKLSVSVLLNSKASPDGVAWSDADK-------AQ 392

Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447
           I+ +++ A GI++ RGD++++ S +F    + ++ T    + D       TV   L +++
Sbjct: 393 ISTMITDAVGISAARGDSLSLMSFNFTPIDI-DAPTALPWWQD------PTVQQPLRYVI 445

Query: 448 GTLLVTFLGLHALRRL 463
           G +L   +    LR L
Sbjct: 446 GGMLGLAMIFFVLRPL 461


>gi|330447943|ref|ZP_08311591.1| flagellar M-ring protein FliF [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492134|dbj|GAA06088.1| flagellar M-ring protein FliF [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 580

 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 107/387 (27%), Positives = 183/387 (47%), Gaps = 35/387 (9%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           + +S +Y  LY + E  D   I   L    I +R+ +    + V    V K R+ LAA+G
Sbjct: 62  WSSSQNYRPLYGQQERFDSGEIISVLETEGIPYRLQEANGQVLVAEGEVAKIRMLLAAKG 121

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           +  +   +G +   + +S G + FM+       LEGE+ RTI ++  I  ARVH+ +P  
Sbjct: 122 I-KAKLPTGLDSLKEDSSLGTSQFMETARYRHGLEGELVRTIIALDAIANARVHLAIPRK 180

Query: 162 GSFRKIGAR-PTASVMIRAINPS---VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
             F +  A  PTASVM+  + P      +  EAI +LV  +V  +   +V+V+D  G+LL
Sbjct: 181 TLFVRHNAEAPTASVMVE-LKPGEDLKTEQVEAIINLVTGSVTGMKTENVSVVDQYGRLL 239

Query: 218 TAN----EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQ 272
           +A+    EM + +  K L   + ++ ++       L   +G  N+R  V A+L+    Q+
Sbjct: 240 SADIGSTEMGK-VNAKYLDYQKNLEKQVIQRAADMLTPIVGPSNYRVQVAADLDFSHVQE 298

Query: 273 IREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332
            +E+V         S  + K+  R E +   S   +   +P     K P+    EN D K
Sbjct: 299 TKEVV--------DSAPVVKNEHRIENN---SIDNIALGVPGSLSNKPPVTGEEENKDSK 347

Query: 333 EEQSNYEINTK---SIATTHDNY---KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLA 386
                 EIN +     +  H  Y   KL +L+++V++N    T     SA     ++   
Sbjct: 348 NTNERTEINRQYALGSSVRHTQYQQGKLNKLNVSVLLNS---TAAPNGSA---WTEAETQ 401

Query: 387 EINKIVSAATGINSRRGDTITITSMDF 413
           +I+ ++  A GI++ RGD+++I S +F
Sbjct: 402 QISAMIKDAVGISADRGDSLSILSFNF 428


>gi|150019080|ref|YP_001311334.1| flagellar MS-ring protein [Clostridium beijerinckii NCIMB 8052]
 gi|149905545|gb|ABR36378.1| flagellar M-ring protein FliF [Clostridium beijerinckii NCIMB 8052]
          Length = 522

 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 116/445 (26%), Positives = 204/445 (45%), Gaps = 51/445 (11%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           F+ +S  Y  L+  L+ +D   +  +L+E  +D +I  N ++I VP   V K R+ LA  
Sbjct: 42  FYSSSNKYQVLFSDLDAADAQTVVNSLNEKKVDTKIDSNTNTIWVPKDQVDKLRLELA-- 99

Query: 101 GLPSSSSNS-GYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
             P+ +S S GYEL D  +SFG+T    +I +VR  +GE+ +TI+S   +  ARVHI   
Sbjct: 100 --PTLTSGSKGYELMDSGSSFGMTDEEFKIKKVRMQQGELEKTIKSFPQVEEARVHITEA 157

Query: 160 DMGSFRKIGARPTASVMIRAINPSV--YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
               F K      A+V ++    +       ++I  LV+ A  N+   ++ V+D    LL
Sbjct: 158 KDSVFVKDKEPGKAAVYLKLKKGTTIGEDQVKSIVALVSGATENIPRENIDVIDDNMNLL 217

Query: 218 TAN---EMERNILGKSLSIVQAIQHEIEMNINKALAAFL----GVDNFRSAVVAELNMDT 270
           T +   +   ++  +++S  Q  +   E  + KA+ + L    G    ++ V   L+ D+
Sbjct: 218 TKDINSDKNNSVSSEAISKQQDAEKNYEDRMQKAIVSLLEPIVGKGKVKATVNVNLDFDS 277

Query: 271 QQIREIVYDPDSKVERSIRLSKDAQRS-ETSQPESAVTVEQNMPHVSDRKVPLPRSLENT 329
           +Q  + V DP+ KV  S   SK+   S  T+  +S V    +    +    P   S    
Sbjct: 278 KQKTQTVVDPN-KVIVSQENSKETNNSGSTATSQSPVDNNMSNTTTATNNNPSASS---- 332

Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE-I 388
            K+++++NYE+            +++RL+ +V+V+              G +D+   + +
Sbjct: 333 -KEDQKTNYEVGKSESKVISAPGEVKRLTASVMVD--------------GNLDAATQQTL 377

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ---VSFMDILSRHFATV-INALV 444
              V  A G+++ RGD +++  M F         T Q    S +D ++   AT   N ++
Sbjct: 378 ENAVGNAIGLDALRGDKVSVVGMAF-------DTTAQDQAKSEIDAMNAEAATAGKNKMM 430

Query: 445 FLVGTLLVTFLGLH----ALRRLHN 465
            + G L    LG+     A RR  N
Sbjct: 431 IVAGVLGALLLGMVIFFIARRRKKN 455


>gi|312884805|ref|ZP_07744497.1| flagellar MS-ring protein [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367457|gb|EFP95017.1| flagellar MS-ring protein [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 582

 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 98/373 (26%), Positives = 178/373 (47%), Gaps = 25/373 (6%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110
           LY + E  D   I   L   NI++R+ +    + VP   V + R+ LAA+G+  +    G
Sbjct: 73  LYSQQESFDTGDIISVLEAENINYRLQEQNGQVLVPEGEVARIRMLLAAKGV-KAKLPMG 131

Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGA 169
            +   + +S G + F++       LEGE+ RTI S++ +  ARVH+ +P    F R+   
Sbjct: 132 LDSLQEDSSLGTSQFIETARYRHGLEGELIRTIISLNSVANARVHLAIPRQTLFVRQDRE 191

Query: 170 RPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA---NEME 223
            P+ASVM+  + P      +  EAI +LV  +V  +    V+V+D  G+LL+A   +E  
Sbjct: 192 APSASVMLE-LRPGEELNSEQVEAIVNLVVGSVTGMKPEQVSVVDQYGRLLSAEIGSEQA 250

Query: 224 RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK 283
             +  K L   + ++ +I    +  L   LG  N+R  V A++N    +  + + D    
Sbjct: 251 GKVNAKYLEYQKNVEKQIIQRASDMLTPILGPSNYRVQVSADMNFSQVEETQEILDATPV 310

Query: 284 VERSIRLSKDAQRSETSQPESAVTVE---QNMPHVSDRKVPLPRSLENTDKKEEQSNYEI 340
           V++   ++ +      S  + A+ V     N P V+  + P   S     + E    Y +
Sbjct: 311 VQKEHTITNN------SVDQIALGVPGTLSNQPPVTG-EAPTQDSQNTNARAEINRQYAV 363

Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400
            +    T +   K+E+LS++V++N+    + L  + D+        +I+ +++ A GI +
Sbjct: 364 GSSVRRTQYQQGKVEKLSMSVLLNESAAPDGLAWTDDEKN------QISTMLADAVGITN 417

Query: 401 RRGDTITITSMDF 413
            RGD+++I S  F
Sbjct: 418 DRGDSLSIMSFSF 430


>gi|297544710|ref|YP_003677012.1| flagellar M-ring protein FliF [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842485|gb|ADH61001.1| flagellar M-ring protein FliF [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 503

 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 113/424 (26%), Positives = 199/424 (46%), Gaps = 45/424 (10%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +QL  F+       + ++ ++A ++ + + L +   + VN P+Y  LY  L + D   + 
Sbjct: 10  EQLTNFWNKFDKKQKMQLGVIAILLFIGVSLLV---YIVNRPNYVVLYSDLSIKDAGVVV 66

Query: 65  VAL-SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN-SFGL 122
             L +E  + ++IS++G +I VP+    + R+ LA +G+P      G+   D +N S   
Sbjct: 67  EKLKTEFKVPYKISNDGKTILVPAQYKDEVRMKLATEGIPEG----GFSFQDAMNNSLAT 122

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMIRAI 180
           T   +    +  L+ EI  ++++I G+  A V+IV+PD  +F       + TA+VM+  +
Sbjct: 123 TDQERRQKYLYFLQNEIQNSLKTIDGVQDAIVNIVVPDQNAFVLSNTTNQATAAVML-TL 181

Query: 181 NPSVYKSAEAIRHL---VAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQ 235
            P V  S+  ++ +   V+ +V  L   +VTV+D+ GK+LTA  ++   N      ++ +
Sbjct: 182 KPGVTLSSSQVKGIIDFVSKSVEGLKPENVTVIDNNGKILTAESDDTAEN-ANSQFALQK 240

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP----DSK-VERSIR- 289
            +Q +++ N+   L    G  N        LN D +    I Y P    D+K + RSI+ 
Sbjct: 241 KVQEDLQQNLQTLLEQVFGPGNVVVRANVTLNFDKKTEDRIEYLPVEGNDNKGIVRSIQE 300

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
           L + A  ++   P  A T   N P           +  + +K E   NYEIN    +   
Sbjct: 301 LKEKATGTQGGNP--AGTSSNNPPTTQTTG----SNTSDYNKTETTINYEINQIKTSLIE 354

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
              K+E +S+AVVVNK      L  S  Q        +I  +V+ A G +SR    +++ 
Sbjct: 355 AQGKIESISVAVVVNKN-----LNNSMKQ--------QIADLVAKAAGGDSRV--QVSVQ 399

Query: 410 SMDF 413
            M F
Sbjct: 400 GMQF 403


>gi|289578434|ref|YP_003477061.1| flagellar M-ring protein FliF [Thermoanaerobacter italicus Ab9]
 gi|289528147|gb|ADD02499.1| flagellar M-ring protein FliF [Thermoanaerobacter italicus Ab9]
          Length = 503

 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 113/424 (26%), Positives = 199/424 (46%), Gaps = 45/424 (10%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +QL  F+       + ++ ++A ++ + + L +   + VN P+Y  LY  L + D   + 
Sbjct: 10  EQLTNFWNKFDKKQKMQLGVIAILLFIGVSLLV---YIVNRPNYVVLYSDLSIKDAGVVV 66

Query: 65  VAL-SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN-SFGL 122
             L +E  + ++IS++G +I VP+    + R+ LA +G+P      G+   D +N S   
Sbjct: 67  EKLKTEFKVPYKISNDGKTILVPAQYKDEVRMKLATEGIPEG----GFSFQDAMNNSLAT 122

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMIRAI 180
           T   +    +  L+ EI  ++++I G+  A V+IV+PD  +F       + TA+VM+  +
Sbjct: 123 TDQERRQKYLYFLQNEIQNSLKTIDGVQDAIVNIVVPDQNAFVLSNTTNQATAAVML-TL 181

Query: 181 NPSVYKSAEAIRHL---VAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQ 235
            P V  S+  ++ +   V+ +V  L   +VTV+D+ GK+LTA  ++   N      ++ +
Sbjct: 182 KPGVTLSSSQVKGIIDFVSKSVEGLKPENVTVIDNNGKILTAESDDTAEN-ANSQFALQK 240

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP----DSK-VERSIR- 289
            +Q +++ N+   L    G  N        LN D +    I Y P    D+K + RSI+ 
Sbjct: 241 KVQEDLQQNLQTLLEQVFGPGNVVVRANVTLNFDKKTEDRIEYLPVEGNDNKGIVRSIQE 300

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
           L + A  ++   P  A T   N P           +  + +K E   NYEIN    +   
Sbjct: 301 LKEKATGTQGGNP--AGTSSNNPPTTQTTG----SNTSDYNKTETTINYEINQIKTSLIE 354

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
              K+E +S+AVVVNK      L  S  Q        +I  +V+ A G +SR    +++ 
Sbjct: 355 AQGKIESISVAVVVNKN-----LNNSMKQ--------QIADLVAKAAGGDSRV--QVSVQ 399

Query: 410 SMDF 413
            M F
Sbjct: 400 GMQF 403


>gi|253682590|ref|ZP_04863387.1| flagellar M-ring protein FliF [Clostridium botulinum D str. 1873]
 gi|253562302|gb|EES91754.1| flagellar M-ring protein FliF [Clostridium botulinum D str. 1873]
          Length = 524

 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 114/425 (26%), Positives = 204/425 (48%), Gaps = 36/425 (8%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           I +Q  + F+    L + + +  + ++L  I+  +     +N+  Y  LY  ++ +D   
Sbjct: 4   IKEQFRKLFEKFKELSKIKKIAFSILVLGIIIGIVYLVISLNTTKYAVLYKDMDPNDAQT 63

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +   L++  +++++ +N  SI VP     + R+ LA Q    +S + GYE+ D  ++FG+
Sbjct: 64  VMAKLADKKLEYKVENN--SIKVPEDKAAELRMELAPQ---LTSGSKGYEILDDGDTFGM 118

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-AIN 181
           T   +E+   RALEGE+AR I+S+  +  A+V +VM   G+F K     +ASV +     
Sbjct: 119 TDKERELKYKRALEGELARDIKSLPEVKEAKVLLVMQQEGNFFKQEDPGSASVTLEFETG 178

Query: 182 PSVYKSA-EAIRHLVAAAVPNLDMGDVTVLD-STGKLLTANE-MERNILGKSLSIVQAIQ 238
             V K   +AI  LV+ +V NL   ++ V+    GK    +E + +    K +S V   Q
Sbjct: 179 KKVTKEQIKAIVALVSGSVKNLPKENIKVVGVVNGKTQDLSEDLFKEDGNKDISSVTEKQ 238

Query: 239 HEIEMNINKA-LAAFLGV------DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
              + N+ K  +   + V      +  ++AV  ++N D  +    ++DP++ V RS    
Sbjct: 239 ENYKKNLEKEYVKKIMNVLTPKYGEGVKAAVNVDVNFDASEKTSTLWDPNNVV-RSEETE 297

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSL-ENTDKKEEQSNYEINTKSIATTHD 350
           KD + S+ S+  SA  V+ NM +  + K     S  E T K     NYE+          
Sbjct: 298 KDTENSKGSKT-SASPVDNNMSNTYNSKDENGTSTHEKTTK-----NYEVGKIEQKVVGA 351

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
             K++++S +V +N   L+ V     D+ KI+S       +V+ A   +  RGD +++  
Sbjct: 352 PGKIKKISASVTINDENLSPV-----DKDKINS-------LVAGAISYDESRGDIVSVEG 399

Query: 411 MDFLE 415
           M F E
Sbjct: 400 MKFNE 404


>gi|224438214|ref|ZP_03659149.1| flagellar MS-ring protein [Helicobacter cinaedi CCUG 18818]
 gi|313144660|ref|ZP_07806853.1| flagellar basal body M-ring protein FliF [Helicobacter cinaedi CCUG
           18818]
 gi|313129691|gb|EFR47308.1| flagellar basal body M-ring protein FliF [Helicobacter cinaedi CCUG
           18818]
          Length = 569

 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 116/457 (25%), Positives = 213/457 (46%), Gaps = 34/457 (7%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVSDVNRISVALSEANIDF 74
           + RI+IL + +++   L     F V + +    YD L+  L   D   I   L +  I +
Sbjct: 20  KQRIIILTTFVVIIAFLTYLVLFRVETKNEYENYDVLFSNLNPEDSAAILQRLQQDKIPY 79

Query: 75  RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134
           +I  + + I VP   V + RI L + GLP +S N G+++  + N+ G T F Q++  + A
Sbjct: 80  KIPQD-NIILVPKDKVYEQRISLGSLGLPKTSKNVGFDILLE-NNVGETPFTQDMKYLVA 137

Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AI 191
            + E+ARTI+S+  I  A V+I MP    F + G  P+ASV I  +  +++ S E    I
Sbjct: 138 KQNELARTIESLKPIEKAIVNISMPKESLFVQGGHPPSASVKI-TVQDNMFLSIEQVVGI 196

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIEMNINKAL 249
           +HLVAAAV  L   +V +++  G+LL  ++   +++ LGK  +  +  Q   E  +   +
Sbjct: 197 KHLVAAAVERLTPQNVKIINQDGELLGEDDEATQQSALGKQAAFQRKYQQNAENAMEAKI 256

Query: 250 AAFLGV---DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306
             FL     D   + V  + +   ++    V+  +  V  +    K+ +     Q     
Sbjct: 257 VKFLKPSVGDGVEAQVTMDFDFSVRKSVAEVFGQNPVVRGTREYEKERKGFRPPQIGGVP 316

Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK-LERLSIAVVVNK 365
            V  N+  V   K      +E   + E   N EI+ K+++   +++  L+R+S +V+++ 
Sbjct: 317 GVVSNIGPVQGLKD--DEMMEWEKESEVVINNEID-KTVSDIKEHFGVLKRVSASVMID- 372

Query: 366 GRLTEVLGRSAD---------QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           G   E +G   +         Q ++D +L  + K    A G N  RGD + + +M F  +
Sbjct: 373 GTYKEAVGEDGEPRLEYIPRSQEEMDKFLEGVKK----AIGYNEARGDQVEVINMQFRNS 428

Query: 417 QL-FNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452
            L +        F D + R+    +  L +++  +++
Sbjct: 429 LLDYRPKDSWELFSDKVERYLGPFMPLLKYVIVAVII 465


>gi|153836097|ref|ZP_01988764.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AQ3810]
 gi|260362945|ref|ZP_05775814.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus K5030]
 gi|260880232|ref|ZP_05892587.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AN-5034]
 gi|260895349|ref|ZP_05903845.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus Peru-466]
 gi|149750851|gb|EDM61596.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AQ3810]
 gi|308085629|gb|EFO35324.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus Peru-466]
 gi|308092563|gb|EFO42258.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AN-5034]
 gi|308112147|gb|EFO49687.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus K5030]
          Length = 571

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 110/437 (25%), Positives = 200/437 (45%), Gaps = 42/437 (9%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           + +S  +  LY + E  D+  I   L    + +R+ +    + VP   V + R+ LA++G
Sbjct: 52  WSSSQSFRPLYSQQERFDIGEIVSVLESEGVSYRMQEQNGQVLVPEGEVARIRMLLASKG 111

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           +  +   +G +   + +S G + FM+       LEGE+ RTI S++ +  ARVH+ +P  
Sbjct: 112 V-KAKLPTGLDSLKEDSSLGTSQFMETARYRHGLEGELVRTIMSLNSVANARVHLAIPRQ 170

Query: 162 GSF-RKIGARPTASVMIRAINPS---VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
             F R+ G  P+ASVM+  + P      +  EAI +L+  +V  +    V+V+D  G+LL
Sbjct: 171 TLFVRQNGENPSASVMLE-LKPGEDLKPEQVEAIINLIVGSVTAMKPEFVSVIDQYGRLL 229

Query: 218 TAN---EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           +A+        +  K L   + ++ +I       L   +G  NFR  V A  +MD  Q+ 
Sbjct: 230 SADVASAEAGKVNAKYLEYQKNVEKQIIQRAADMLTPIVGPSNFRVQVAA--DMDFSQVE 287

Query: 275 EIVYDPDSKVERSIRLSKDAQRSE-TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKE 333
           E          R I  +    R+E T Q  S   +   +P     + P+       D + 
Sbjct: 288 ET---------REILDNAPVVRNEHTIQNNSIDQIALGVPGSLSNQPPVTGEAATNDSQN 338

Query: 334 EQSNYEINTKSIA------TTHDNYKLERLSIAVVVN-KGRLTEVLGRSADQGKIDSYLA 386
             +  E+N +         T +   ++E+LS++V++N K     V    AD+       A
Sbjct: 339 TNARSEVNRQYAVGSSVRRTQYQQGQIEKLSVSVLLNSKASPDGVAWSDADK-------A 391

Query: 387 EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFL 446
           +I+ +++ A GI++ RGD++++ S +F    + ++ T    + D       TV   L ++
Sbjct: 392 QISTMITDAVGISAARGDSLSLMSFNFTPIDI-DAPTALPWWQD------PTVQQPLRYV 444

Query: 447 VGTLLVTFLGLHALRRL 463
           +G +L   +    LR L
Sbjct: 445 IGGMLGLAMIFFVLRPL 461


>gi|260752868|ref|YP_003225761.1| flagellar M-ring protein FliF [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258552231|gb|ACV75177.1| flagellar M-ring protein FliF [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 619

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 122/465 (26%), Positives = 210/465 (45%), Gaps = 72/465 (15%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           F +++P   +LY     +D   I+ AL    I + I+     I+V      KAR+ LA Q
Sbjct: 71  FLLSAPPQRDLYPGAGDADRASIASALETGGIHYNINRGNGVITVSEKDYYKARMLLAQQ 130

Query: 101 GLPSSSSNSGYELFDKVNSFGL-TSFMQEITRVRAL-EGEIARTIQSISGIVAARVHIVM 158
           GLP S+ +  +     ++S  L  S   E  R+RA  E ++ARTI++I  +  ARVHI  
Sbjct: 131 GLPKSAPDGDH----VISSLPLGASRAVEGERLRAAREVDLARTIETIDVVNQARVHIAE 186

Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           P    F +     TASVM++ +      +A  +AI++LVAA+VP +    V+V+D  G L
Sbjct: 187 PQPSPFVREQVHGTASVMLKLMTGRNLSNAQVQAIQNLVAASVPGMAPEAVSVVDQAGHL 246

Query: 217 LTA-NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM-DTQQIR 274
           L+A +  + +I  + L + Q ++      +NK L   LG +N+ + V  +L+  ++Q  R
Sbjct: 247 LSATSNADNDINDRQLRLQQTVEARYMDALNKLLVPLLGENNYTAEVHTDLDFTESQATR 306

Query: 275 EIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRS--------- 325
           E      S    S   +KD    +      A++   NMP       P P +         
Sbjct: 307 ESYPKEGSLRSESGSWNKDGGPDQNGGIPGAMS---NMP-------PTPANPTQNPPPNL 356

Query: 326 -----------------------LENTDKKEEQSN--------YEINTKSIATTHDN--- 351
                                    N    ++  N         E   ++ A T +N   
Sbjct: 357 QPPAQPNNQQNAQNGQQGQNAQGQPNGQNAQQGQNARAPGSVPAETAQQAQARTSENFNR 416

Query: 352 -YKLERLSIAVVVNK----GRLTEVLG-RSADQGKIDS--YLAEINKIVSAATGINSRRG 403
            Y+L R  ++V+ N      R+T  +  R  + GK  S   +A++ K++  A G ++ RG
Sbjct: 417 YYELGR-EVSVIRNPTGSVKRVTVAIALRQINHGKPPSPEQVAQLEKLIKGAIGFDASRG 475

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
           D + I+S DF+   +F+    Q S++ +L+R+ + ++ A + + G
Sbjct: 476 DVVAISSSDFMGGSVFSMPWYQNSWVPLLARNLSALLVAALVIFG 520


>gi|126462456|ref|YP_001043570.1| flagellar M-ring protein FliF [Rhodobacter sphaeroides ATCC 17029]
 gi|126104120|gb|ABN76798.1| flagellar M-ring protein FliF [Rhodobacter sphaeroides ATCC 17029]
          Length = 570

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/313 (30%), Positives = 152/313 (48%), Gaps = 26/313 (8%)

Query: 2   AILDQLLQFF-KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
            +LDQ+ +F  + G       ILILA  +L      +A    +  P    LY  L  ++ 
Sbjct: 23  GMLDQIRRFGDQPGLRRAMPAILILAVTVLA-----LAGWILLREPARVTLYPGLPEAEK 77

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            R+  +L+   I   I +    ++VP +   +AR+ LAAQGLP    +    L D     
Sbjct: 78  ARVIDSLTGGGIAAVIDERTGEVAVPGADYHRARMLLAAQGLPQGLPDGNALLSDL--PM 135

Query: 121 GLTSFMQEITRVR-ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           G TS   E  R+R A E ++AR+I  IS + AARVH+ +P+  +F +    P ASV ++ 
Sbjct: 136 G-TSKSVETARLRQAQELDLARSITEISAVSAARVHLALPERSAFLRESQPPRASVFLQI 194

Query: 180 INPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI 237
           +       A  EAI +LV+++VP +   DVTV+D  G+LL+    +  +L       + +
Sbjct: 195 VPGRTLDGAQVEAIVNLVSSSVPGMARQDVTVVDQMGRLLSRGSDDPAVLLND----RQL 250

Query: 238 QHEIEMN------INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
           QH +++       I   L    G  N    V  +++   Q+IRE   DPD    R+  L+
Sbjct: 251 QHRVQLETLYRNRIESLLTPIAGPGNLAVQVTIDMDFTRQEIREEQVDPD----RTALLA 306

Query: 292 KDAQRSETSQPES 304
           + +Q  ET+ P++
Sbjct: 307 EQSQIEETADPQA 319


>gi|260901174|ref|ZP_05909569.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AQ4037]
 gi|308109395|gb|EFO46935.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AQ4037]
          Length = 571

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 110/437 (25%), Positives = 200/437 (45%), Gaps = 42/437 (9%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           + +S  +  LY + E  D+  I   L    + +R+ +    + VP   V + R+ LA++G
Sbjct: 52  WSSSQSFRPLYSQQERFDIGEIVSVLESEGVSYRMQEQNGQVLVPEGEVARIRMLLASKG 111

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           +  +   +G +   + +S G + FM+       LEGE+ RTI S++ +  ARVH+ +P  
Sbjct: 112 V-KAKLPTGLDSLKEDSSLGTSQFMETARYRHGLEGELVRTIMSLNSVANARVHLAIPRQ 170

Query: 162 GSF-RKIGARPTASVMIRAINPS---VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
             F R+ G  P+ASVM+  + P      +  EAI +L+  +V  +    V+V+D  G+LL
Sbjct: 171 TLFVRQNGETPSASVMLE-LKPGEDLKPEQVEAIINLIVGSVTAMKPEFVSVIDQYGRLL 229

Query: 218 TANEMER---NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           +A+        +  K L   + ++ +I       L   +G  NFR  V A  +MD  Q+ 
Sbjct: 230 SADVASAEAGKVNAKYLEYQKNVEKQIIQRAADMLTPIVGPSNFRVQVAA--DMDFSQVE 287

Query: 275 EIVYDPDSKVERSIRLSKDAQRSE-TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKE 333
           E          R I  +    R+E T Q  S   +   +P     + P+       D + 
Sbjct: 288 ET---------REILDNAPVVRNEHTIQNNSIDQIALGVPGSLSNQPPVTGDAATNDSQN 338

Query: 334 EQSNYEINTKSIA------TTHDNYKLERLSIAVVVN-KGRLTEVLGRSADQGKIDSYLA 386
             +  E+N +         T +   ++E+LS++V++N K     V    AD+       A
Sbjct: 339 TNARSEVNRQYAVGSSVRRTQYQQGQIEKLSVSVLLNSKASPDGVAWSDADK-------A 391

Query: 387 EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFL 446
           +I+ +++ A GI++ RGD++++ S +F    + ++ T    + D       TV   L ++
Sbjct: 392 QISTMITDAVGISAARGDSLSLMSFNFTPIDI-DAPTALPWWQD------PTVQQPLRYV 444

Query: 447 VGTLLVTFLGLHALRRL 463
           +G +L   +    LR L
Sbjct: 445 IGGMLGLAMIFFVLRPL 461


>gi|167037669|ref|YP_001665247.1| flagellar M-ring protein FliF [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|320116084|ref|YP_004186243.1| flagellar M-ring protein FliF [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166856503|gb|ABY94911.1| flagellar M-ring protein FliF [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|319929175|gb|ADV79860.1| flagellar M-ring protein FliF [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 503

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 105/378 (27%), Positives = 185/378 (48%), Gaps = 34/378 (8%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +QL  F+       + ++ I+A ++ + I L +   + VN P+Y  LY  L + D   + 
Sbjct: 10  EQLTNFWNKFDKKQKIQLGIIAILLFIGISLLV---YIVNRPNYVVLYSDLSIKDAGAVV 66

Query: 65  VAL-SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV-NSFGL 122
             L +E  I ++IS++G++I VP+    + R+ LA +G+P      G+   D + NS   
Sbjct: 67  EKLKTEFKIPYKISNDGTTILVPAQYKDEVRMKLATEGIPQ----GGFSFQDAMNNSLAT 122

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMIRAI 180
           T   +    +  L+ EI  ++++I G+  A V+IV+PD  +F       + TA+VM+  +
Sbjct: 123 TDQERRQKYLYFLQNEIQNSLKTIDGVQDAIVNIVVPDQNAFVLSNTTNQATAAVML-TL 181

Query: 181 NPSVYKSAEAIRHL---VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI 237
            P V  S+  ++ +   V+ +V  L   +VTV+D+ GK+LTA   E +   ++ +   A+
Sbjct: 182 KPGVTLSSSQVKGIIDFVSKSVEGLKPENVTVIDNNGKILTA---ESDTTAENANTQFAL 238

Query: 238 QHEIEMNINKALAAFL----GVDNFRSAVVAELNMDTQQIREIVYDP----DSK-VERSI 288
           Q +++ ++  +L   L    G  N        LN D +    I Y P    D+K + RSI
Sbjct: 239 QKKVQEDLQNSLQTLLEQVFGPGNVVVRANVTLNFDKKTQDTIEYLPVQGNDNKGIVRSI 298

Query: 289 R-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
           + L + A  ++   P  A T   N P +S           + ++ E   NYEIN    + 
Sbjct: 299 QELKEKATGTQGGSP--AGTATNNPPVISTTG----NGTSDYNRTEITINYEINQIKTSL 352

Query: 348 THDNYKLERLSIAVVVNK 365
                K+E +SIAVV+N+
Sbjct: 353 VQAQGKIENISIAVVINQ 370


>gi|147678424|ref|YP_001212639.1| flagellar MS-ring protein [Pelotomaculum thermopropionicum SI]
 gi|146274521|dbj|BAF60270.1| flagellar biosynthesis/type III secretory pathway lipoprotein
           [Pelotomaculum thermopropionicum SI]
          Length = 506

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 125/470 (26%), Positives = 215/470 (45%), Gaps = 50/470 (10%)

Query: 9   QFFKSGTSLGRTRILI---LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           +F +   SL +T+ +I   +AS  LV   LF   +     P Y  L+  LE  D   I  
Sbjct: 9   RFRERWQSLSQTQKVISVLVASGALV--CLFYLGQL-ATRPAYAPLFTGLEPKDAGVIVD 65

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L    I ++I+D G +I VP   V + RI LA+ G        G+ELFD+ +  G T F
Sbjct: 66  ELKALKIPYQIADEGKTIKVPEDKVYEVRIQLASSGA-LGGGGMGFELFDQ-SKLGQTDF 123

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR--PTASVMIRAINPS 183
            Q++   RAL+ E+ RTI  + G+  ARVH+V+P    F  IG R  P+A+V ++ + P+
Sbjct: 124 EQQVGYQRALQEELRRTIVQLEGVEQARVHLVIPQKSVF--IGERGTPSAAVALK-LKPA 180

Query: 184 VY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQH- 239
                +  + I  L+  +V  L   +V ++D+ G +L+ ++++      ++    A++H 
Sbjct: 181 ARLKPEQVQGICDLLVGSVEGLKPENVHIIDTEGNVLS-DDLKSGEW--AVGTKTALEHQ 237

Query: 240 --------EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
                   E+E  + + L   +G +   + V A+L+ + QQ    V    S    ++R+S
Sbjct: 238 KARREYEKELEKRVQQMLTQIMGQNKAVAMVTADLDFNQQQTTSTV----SSNPNNLRIS 293

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           +   R      E+      +  ++S           N  ++E   NY++NT         
Sbjct: 294 EHIVRETGGGTEAGGPPGTD-SNLSTYPALQGAGTTNYSREESTINYQVNTVQETVVKAP 352

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
             + RLS +VV+N+             G +D  + ++  +V+AA G +  RGD I ++SM
Sbjct: 353 GTVRRLSASVVLNE-----------TDGPVD--VQKVRDVVAAAIGYDQARGDQINVSSM 399

Query: 412 DFLENQLFNSGTVQVSFMDILSR-HFATVINALVFLVGTLLVTFLGLHAL 460
            F ++ L     V+    +  SR  F   +       G LL+  L + AL
Sbjct: 400 AFDDSYL---KKVEAEMAEAESRARFKERLYLYALSGGALLLVVLSILAL 446


>gi|269796398|ref|YP_003315853.1| flagellar basal-body M-ring protein/flagellar hook-basal body
           protein FliF [Sanguibacter keddieii DSM 10542]
 gi|269098583|gb|ACZ23019.1| flagellar basal-body M-ring protein/flagellar hook-basal body
           protein FliF [Sanguibacter keddieii DSM 10542]
          Length = 530

 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 103/385 (26%), Positives = 178/385 (46%), Gaps = 43/385 (11%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            + + P +  LY  L  +D + I   L+   + +++++ GS++ VP+  V   R+ +AA 
Sbjct: 43  MWFSRPQFSPLYTDLAPADASAIVDQLTAQGVKYQLTNGGSTVLVPTESVYDMRLKVAAS 102

Query: 101 GLPSSSSNSGYELFDKVNSFGLTS--FMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
           G+ S S++ GY L D     G+TS  F Q++T  RALEGE+ +T+ S+ G+  A V + M
Sbjct: 103 GM-SPSADGGYSLLDD---MGMTSSEFQQDVTYKRALEGEMGKTVSSMQGVELATVKLAM 158

Query: 159 PDMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           P    F      PTASV ++  +         ++I +LV+A+V  +   DV V+DS+G +
Sbjct: 159 PAESVFVDQATDPTASVFVKTRSGVTLTDDQVQSIVNLVSASVEGMKATDVAVIDSSGAV 218

Query: 217 LTANEMERNILGKSLSIVQAIQHE--IEMNINKALAAFLGVDNFRSAVVAELNMD-TQQI 273
           L+A       L  S    Q +++E  +  +I   L   +GV      V A+L+ D T++ 
Sbjct: 219 LSAV---GTGLAGSGGNKQTVEYEQRVAQSIQAMLEPIVGVGKAVVTVTADLDYDATERT 275

Query: 274 REIVYDPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDRKVPLPRSLENTD 330
           +E      S  E  + L++     E      P + V    N+      +VP      N  
Sbjct: 276 QESF----SSAEGVLPLTERTTTEEFAGGGNPATGVLGPDNI------QVP------NGT 319

Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG--RLTEVLGRSADQGKIDSYLAEI 388
                +N         T+  N  +++L+   V   G  R   V             +A++
Sbjct: 320 ADGSYTN--------ETSEANNAVDKLTEHTVTAPGTVRRQSVAVAVDAAAAAAVDMAQL 371

Query: 389 NKIVSAATGINSRRGDTITITSMDF 413
             +VS+A+G +  RGD +T++ M F
Sbjct: 372 QAMVSSASGFDEARGDVVTVSQMPF 396


>gi|28901391|ref|NP_801046.1| flagellar MS-ring protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|28809938|dbj|BAC62879.1| putative flagellar M-ring protein [Vibrio parahaemolyticus RIMD
           2210633]
          Length = 584

 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 108/436 (24%), Positives = 200/436 (45%), Gaps = 40/436 (9%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           + +S  +  LY + E  D+  I   L    + +R+ +    + VP   V + R+ LA++G
Sbjct: 65  WSSSQSFRPLYSQQERFDIGEIVSVLESEGVSYRMQEQNGQVLVPEGEVARIRMLLASKG 124

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           +  +   +G +   + +S G + FM+       LEGE+ RTI S++ +  ARVH+ +P  
Sbjct: 125 V-KAKLPTGLDSLKEDSSLGTSQFMETARYRHGLEGELVRTIMSLNSVANARVHLAIPRQ 183

Query: 162 GSF-RKIGARPTASVMIRAINPS---VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
             F R+ G  P+ASVM+  + P      +  EAI +L+  +V  +    V+V+D  G+LL
Sbjct: 184 TLFVRQNGENPSASVMLE-LKPGEDLKPEQVEAIINLIVGSVTAMKPEFVSVIDQYGRLL 242

Query: 218 TANEMER---NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           +A+        +  K L   + ++ +I       L   +G  NFR  V A  +MD  Q+ 
Sbjct: 243 SADVASAEAGKVNAKYLEYQKNVEKQIIQRAADMLTPIVGPSNFRVQVAA--DMDFSQVE 300

Query: 275 EIVYDPDSKVERSIRLSKDAQRSE-TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKE 333
           E          R I  +    R+E T Q  S   +   +P     + P+       D + 
Sbjct: 301 ET---------REILDNAPVVRNEHTIQNNSIDQIALGVPGSLSNQPPVTGEAATNDSQN 351

Query: 334 EQSNYEINTKSIA------TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE 387
             +  E+N +         T +   ++E+LS++V++N     + +  S      D+  A+
Sbjct: 352 TNARSEVNRQYAVGSSVRRTQYQQGQIEKLSVSVLLNSKASPDGVAWS------DADKAQ 405

Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447
           I+ +++ A GI++ RGD++++ S +F    + ++ T    + D       TV   L +++
Sbjct: 406 ISTMITDAVGISAARGDSLSLMSFNFTPIDI-DAPTALPWWQD------PTVQQPLRYVI 458

Query: 448 GTLLVTFLGLHALRRL 463
           G +L   +    LR L
Sbjct: 459 GGMLGLAMIFFVLRPL 474


>gi|331269314|ref|YP_004395806.1| flagellar M-ring protein FliF [Clostridium botulinum BKT015925]
 gi|329125864|gb|AEB75809.1| flagellar M-ring protein FliF [Clostridium botulinum BKT015925]
          Length = 524

 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 114/423 (26%), Positives = 201/423 (47%), Gaps = 41/423 (9%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           +L++ FK  + + +    +L   I+  I+  + +   +N+  Y  LY  ++ +D   +  
Sbjct: 10  KLVEKFKELSKIKKIAFSVLVLGIITGIIYLVIS---LNTTKYAVLYKDMDPNDAQTVMA 66

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L++  I++++ +N  SI VP     + R+ LA Q    ++ + GYE+ D  ++FG+T  
Sbjct: 67  KLADKKIEYKVENN--SIRVPEDKAAELRMELAPQ---LTNGSKGYEILDNGDTFGMTDK 121

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-AINPSV 184
            +E+   RALEGE+AR I+S+  +  A+V +VM   G+F K     +ASV +       V
Sbjct: 122 ERELKYKRALEGELARDIKSLPEVKDAKVLLVMQQEGNFFKQDDPGSASVTLEFETGKKV 181

Query: 185 YKSA-EAIRHLVAAAVPNLDMGDVTVLD-STGKLLTANE-MERNILGKSLSIVQAIQHEI 241
            K   +AI  LV+ +V NL   ++ V+    GK    +E + +    K +S V   Q   
Sbjct: 182 TKEQIKAIVALVSGSVKNLPKENIKVVGVVNGKTQDLSEDLFKEDGNKDISSVTEKQESY 241

Query: 242 EMNINKA--------LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293
           + N+ K         L    G D  ++AV  +++ D  +    ++DP++ V RS    KD
Sbjct: 242 KKNLEKEYVKKIMNILTPKYG-DGVKAAVNVDVDFDASEKTSTLWDPNNVV-RSEETEKD 299

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSL-ENTDKKEEQSNYEINTKSIATTHDNY 352
              S+  +  SA  V+ NM +  + K     S  E T K     NYE+            
Sbjct: 300 TDNSKGGKT-SAGPVDNNMSNTYNAKDQNGTSTHEKTTK-----NYEVGKVEQKVVGAPG 353

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
           K++++S +V +N   L+ V     D+ KI+S       +V+ A   +  RGD +++  M 
Sbjct: 354 KIKKISASVTINDENLSPV-----DKDKINS-------LVAGAISYDESRGDIVSVEGMK 401

Query: 413 FLE 415
           F E
Sbjct: 402 FNE 404


>gi|29423531|gb|AAO73593.1| lateral flagellar FliF-like M-ring protein [Vibrio
           parahaemolyticus]
          Length = 584

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 110/437 (25%), Positives = 200/437 (45%), Gaps = 42/437 (9%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           + +S  +  LY + E  D+  I   L    + +R+ +    + VP   V + R+ LA++G
Sbjct: 65  WSSSQSFRPLYSQQERFDIGEIVSVLESEGVSYRMQEQNGQVLVPEGEVARIRMLLASKG 124

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           +  +   +G +   + +S G + FM+       LEGE+ RTI S++ +  ARVH+ +P  
Sbjct: 125 V-KAKLPTGLDSLKEDSSLGTSQFMETARYRHGLEGELVRTIMSLNSVANARVHLAIPRQ 183

Query: 162 GSF-RKIGARPTASVMIRAINPS---VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
             F R+ G  P+ASVM+  + P      +  EAI +L+  +V  +    V+V+D  G+LL
Sbjct: 184 TLFVRQNGENPSASVMLE-LKPGEDLKPEQVEAIINLIVGSVTAMKPEFVSVIDQYGRLL 242

Query: 218 TAN---EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           +A+        +  K L   + ++ +I       L   +G  NFR  V A  +MD  Q+ 
Sbjct: 243 SADVASAEAGKVNAKYLEYQKNVEKQIIQRAADMLTPIVGPSNFRVQVAA--DMDFSQVE 300

Query: 275 EIVYDPDSKVERSIRLSKDAQRSE-TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKE 333
           E          R I  +    R+E T Q  S   +   +P     + P+       D + 
Sbjct: 301 ET---------REILDNAPVVRNEHTIQNNSIDQIALGVPGSLSNQPPVTGDAATNDSQN 351

Query: 334 EQSNYEINTKSIA------TTHDNYKLERLSIAVVVN-KGRLTEVLGRSADQGKIDSYLA 386
             +  E+N +         T +   ++E+LS++V++N K     V    AD+       A
Sbjct: 352 TNARSEVNRQYAVGSSVRRTQYQQGQIEKLSVSVLLNSKASPDGVAWSDADK-------A 404

Query: 387 EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFL 446
           +I+ +++ A GI++ RGD++++ S +F    + ++ T    + D       TV   L ++
Sbjct: 405 QISTMITDAVGISAARGDSLSLMSFNFTPIDI-DAPTALPWWQD------PTVQQPLRYV 457

Query: 447 VGTLLVTFLGLHALRRL 463
           +G +L   +    LR L
Sbjct: 458 IGGMLGLAMIFFVLRPL 474


>gi|68164520|gb|AAY87249.1| predicted flagellar basal-body M-ring protein [uncultured bacterium
           BAC17H8]
          Length = 573

 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 109/400 (27%), Positives = 191/400 (47%), Gaps = 43/400 (10%)

Query: 41  FFVNS--PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
           FFV S  P    LY  L  ++  R+  AL  A +D  +  +   + VP      +R+ LA
Sbjct: 56  FFVVSQQPERTTLYASLPEAEKARVVDALKNAGVDVVLDPSTGDVIVPVKDYHSSRMTLA 115

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
           AQGLP+S  + GY+    +   G +  ++ +   ++ E E+AR+I  I G+V ARVH+ +
Sbjct: 116 AQGLPASIPD-GYDSLSDI-PMGSSRSVENVRLKQSQEIELARSISEIDGLVTARVHLAI 173

Query: 159 PDMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           P+   F +    PTASV ++  N      +  +AI HLV+++VP +   DVTV+D  G L
Sbjct: 174 PEKSVFARSATPPTASVFVQMENGRSLSRQQVDAIVHLVSSSVPFMAKNDVTVVDQYGNL 233

Query: 217 LTANEMERNILGKSLSIVQAIQHEIEMNINKALA---AFLGVDNFRSAVVAELNMDTQQI 273
           L+    +   +     +   I+ E E+  N+ +A     +G  N  + V  +++    ++
Sbjct: 234 LSRPPQDSAGMMSDAQLEHRIRLE-EIYRNRVIALVSPIVGAGNVTAQVNLDIDFTRSEV 292

Query: 274 REIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE------ 327
            E V DP+    RS + S ++         SA  + + +P  +  + P    ++      
Sbjct: 293 TEEVMDPEGTALRSEQSSSES---------SAEIIAKGVPGATSNRAPTQTDIDTQQNVD 343

Query: 328 ----NTDKKEEQS---NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380
               N ++   QS   NYE++     T   + ++  +  AV+V   R  EV+  +A+ G 
Sbjct: 344 SSDPNANRARSQSSTRNYEVSRTVSTTQRPSSQITGIQAAVLV---REMEVM--NAETGL 398

Query: 381 I------DSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           +      +  L EI  +V+ A GI+  RGD +T++S  F+
Sbjct: 399 MEVSEIPEEKLKEIEALVANAIGIDDGRGDRLTVSSSTFV 438


>gi|152965616|ref|YP_001361400.1| flagellar M-ring protein FliF [Kineococcus radiotolerans SRS30216]
 gi|151360133|gb|ABS03136.1| flagellar M-ring protein FliF [Kineococcus radiotolerans SRS30216]
          Length = 537

 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 99/378 (26%), Positives = 177/378 (46%), Gaps = 37/378 (9%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           + ++P Y  ++  L  +D N +   L    + ++++DNG++I VP+ +V   R+ ++  G
Sbjct: 49  WASTPSYTPMFSNLSGADANAMVEKLDADGVPYQLADNGATILVPADVVDSERLAMSGAG 108

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP + + SGY L  +      + FMQ+ T  + L+GE+  TI+SI G+ +A V++ +P  
Sbjct: 109 LP-ADTGSGYTLLTE-QKVTTSEFMQQKTYQKVLQGELESTIESIDGVESAVVNLAIPQK 166

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
             F       TASV+++ + P    S +   +I +LV+  V  +D  +V+V+D  G  L+
Sbjct: 167 DVFLDEQDPTTASVLVK-LRPGKELSNDQVTSIVNLVSGGVEGMDPANVSVVDDKGNTLS 225

Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFL----GVDNFRSAVVAELNMDTQQIR 274
            +       G   S  Q    +   + +  L  FL    G  N ++ V A LN D +   
Sbjct: 226 TD-------GSGSSAQQEKTSDYNASASADLQTFLESVYGKGNVKATVKATLNYDDKTES 278

Query: 275 EIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRS-LENTD--- 330
              Y    +++  +  +K  +  E +   +A  V      +    + +P    EN     
Sbjct: 279 STTYSQPQEID-PLAEAKTEETYEGTTGAAATGV------LGPDNIAVPGGDAENGGGYA 331

Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINK 390
           KK E +N  IN     T     KLE+ +++VVVN G          +Q         I +
Sbjct: 332 KKSETNNNAINKIDTVTKQAPGKLEKQTVSVVVNAGAKGAAGAADVNQ---------ITQ 382

Query: 391 IVSAATGINSRRGDTITI 408
           IV+ A GI++ RGD++++
Sbjct: 383 IVNQAAGIDATRGDSVSV 400


>gi|167040330|ref|YP_001663315.1| flagellar M-ring protein FliF [Thermoanaerobacter sp. X514]
 gi|300914414|ref|ZP_07131730.1| flagellar M-ring protein FliF [Thermoanaerobacter sp. X561]
 gi|307724350|ref|YP_003904101.1| flagellar M-ring protein FliF [Thermoanaerobacter sp. X513]
 gi|166854570|gb|ABY92979.1| flagellar M-ring protein FliF [Thermoanaerobacter sp. X514]
 gi|300889349|gb|EFK84495.1| flagellar M-ring protein FliF [Thermoanaerobacter sp. X561]
 gi|307581411|gb|ADN54810.1| flagellar M-ring protein FliF [Thermoanaerobacter sp. X513]
          Length = 503

 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 101/374 (27%), Positives = 181/374 (48%), Gaps = 26/374 (6%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +QL  F+       + ++ I+A ++ + I L +   + VN P+Y  LY  L + D   + 
Sbjct: 10  EQLTNFWNKFDKKQKIQLGIIAILLFIGISLLV---YIVNRPNYVVLYSDLSIKDAGAVV 66

Query: 65  VAL-SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV-NSFGL 122
             L +E  I ++IS++G++I VP+    + R+ LA +G+P      G+   D + NS   
Sbjct: 67  EKLKTEFKIPYKISNDGTTILVPAQYKDEVRMKLATEGIPQ----GGFSFQDAMNNSLAT 122

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMIRAI 180
           T   +    +  L+ EI  ++++I G+  A V+IV+PD  +F       + TA+VM+  +
Sbjct: 123 TDQERRQKYLYFLQNEIQNSLKTIDGVQDAIVNIVVPDQNAFVLSNTTNQATAAVML-TL 181

Query: 181 NPSVYKSAEAIRHL---VAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQA 236
            P V  S+  ++ +   V+ +V  L   +VTV+D+ GK+LTA ++          ++ + 
Sbjct: 182 KPGVTLSSSQVKGIIDFVSKSVEGLKPENVTVIDNNGKILTAESDTTAENANTQFTLQKK 241

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP----DSK-VERSIRLS 291
           +Q +++ ++   L    G  N        LN D +    I Y P    D+K + RSI+  
Sbjct: 242 VQEDLQNSLQTLLEQVFGPGNVVVRANVTLNFDKKTQDTIEYLPVQGNDNKGIVRSIQEL 301

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           K+  ++  +Q  S+     N P V+           +  + E   NYEIN    +     
Sbjct: 302 KE--KATGTQGGSSPGTASNNPPVASTT---GNGTSDYSRTETTINYEINQIKTSLVQAQ 356

Query: 352 YKLERLSIAVVVNK 365
            K+E +SIAVVVN+
Sbjct: 357 GKIENISIAVVVNQ 370


>gi|163800134|ref|ZP_02194035.1| flagellar M-ring protein [Vibrio sp. AND4]
 gi|159175577|gb|EDP60371.1| flagellar M-ring protein [Vibrio sp. AND4]
          Length = 583

 Score =  107 bits (267), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 109/430 (25%), Positives = 204/430 (47%), Gaps = 28/430 (6%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           + +S  +  LY + E  D+  I   L    I +R+ +    + VP   V + R+ LA++G
Sbjct: 65  WSSSQSFRPLYSQQERFDIGEIVSVLESEGISYRMQEQNGQVLVPEGEVARIRMLLASKG 124

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           +  +   +G +   + +S G + FM+       LEGE+ RTI S++ I  ARVH+ +P  
Sbjct: 125 V-KAKLPTGLDSLKEDSSLGTSQFMETARYRHGLEGELVRTIMSLNSIANARVHLAIPRQ 183

Query: 162 GSF-RKIGARPTASVMIRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
             F R+    P+ASVM+        KS   EAI +LV  +V  +    V+V+D  G+LL+
Sbjct: 184 TLFVRQNTENPSASVMLELKPGEDLKSEQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLS 243

Query: 219 AN---EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDT-QQIR 274
           A+        +  K L   ++++ +I       L   +G  NFR  V A++N    ++ +
Sbjct: 244 ADIASAEAGKVNAKYLEYQKSVEKQIIQRAADMLTPIVGPSNFRVQVAADMNFSQIEETQ 303

Query: 275 EIVYD-PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKE 333
           EI+ + P  + E +I+ +   Q +    P S      N P V+  + P   S  +  + E
Sbjct: 304 EILDNAPVVRNEHTIQNNSIDQIA-LGIPGSL----SNQPPVTG-EAPTNDSQNSNARSE 357

Query: 334 EQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVS 393
               Y + +    T +   ++E+LS++V++N     + +  S      ++  ++I+ ++ 
Sbjct: 358 VNRQYAVGSSVRRTQYQQGQVEKLSVSVLLNSKVAPDGVAWS------EAEKSQISTMIM 411

Query: 394 AATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVT 453
            A GI+  RGD++++ S +F   + F++ +    + D       TV   L +++G +L  
Sbjct: 412 DAAGISDARGDSLSLMSFNFTPIE-FDAPSAMPWWQD------PTVQQPLRYVIGGVLGL 464

Query: 454 FLGLHALRRL 463
            +    LR L
Sbjct: 465 AMIFFVLRPL 474


>gi|328958284|ref|YP_004375670.1| flagellar M-ring protein [Carnobacterium sp. 17-4]
 gi|328674608|gb|AEB30654.1| flagellar M-ring protein [Carnobacterium sp. 17-4]
          Length = 524

 Score =  107 bits (267), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 113/443 (25%), Positives = 214/443 (48%), Gaps = 43/443 (9%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           +LG+++ + L  V++  + +  +  ++     Y  L+  LE +D   I   +    I ++
Sbjct: 17  NLGKSKQIGLVFVLIFVVSIVTSLTYYTQKVEYATLFSDLEEADAGTIVNDIKTKGIKYK 76

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQG-LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134
           + D+G++I +  + V   RI LA    LP S++  G+E+FD+  S   T   ++I   RA
Sbjct: 77  LEDDGTTILIDQAQVDTYRIELAVNDMLPKSTT--GFEIFDET-SMMATDEDRKIMYQRA 133

Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMIRAINPSV--YKSAEA 190
           + GE+ R+I ++  I  A+V + +P+   F   +  ++ +AS+++  I+ S     + + 
Sbjct: 134 VTGELERSISALDSIEQAKVMLSLPEDSVFTSEENQSQASASIVLTPISGSQIPMSAVQG 193

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNI-----LGKSLSIVQAIQHEIEMN 244
           I  LV+ AV NL   ++ ++D+ G LL TA E E N+     + K  +I ++ + E+E  
Sbjct: 194 IASLVSGAVDNLPKENIKIVDTAGNLLSTALEDEGNLNATDLVSKYQAITKSYEQELEQK 253

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           + + L    G+D    AV A++N D+ +  EI+   DS V RS  +S      +  + E 
Sbjct: 254 LLQTLGPIYGMDKMTVAVNAKMNFDSNE-SEIINYGDSSV-RSEAVSAGGGTIDVEEGEG 311

Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
               E ++  +   +     +   T      +NYE+N+++  T     ++E+LS +V+ +
Sbjct: 312 ---FENSINQIQSGEEGGNSTYNRT------TNYELNSETTNTIKAPGEVEKLSASVIFD 362

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT- 423
            G L       ADQ  +++       IV+   G    R DTI+I  +DF         T 
Sbjct: 363 -GNL-----NPADQESLEA-------IVATTIGSVEER-DTISIQGIDFATTTDATDTTA 408

Query: 424 ---VQVSFMDILSRHFATVINAL 443
              ++ S  D L R++  ++  L
Sbjct: 409 PEQLKSSIRDTLVRYWPYLVGGL 431


>gi|326389483|ref|ZP_08211050.1| flagellar M-ring protein FliF [Thermoanaerobacter ethanolicus JW
           200]
 gi|325994488|gb|EGD52913.1| flagellar M-ring protein FliF [Thermoanaerobacter ethanolicus JW
           200]
          Length = 506

 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 103/377 (27%), Positives = 184/377 (48%), Gaps = 32/377 (8%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +QL  F+       + ++ I+A ++ + I L +   + VN P+Y  LY  L + D   + 
Sbjct: 10  EQLTNFWNKFDKKQKIQLGIIAILLFIGISLLV---YIVNRPNYVVLYSDLSIKDAGAVV 66

Query: 65  VAL-SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV-NSFGL 122
             L +E  I ++IS++G++I VP+    + R+ LA +G+P      G+   D + NS   
Sbjct: 67  EKLKTEFKIPYKISNDGTTILVPAQYKDEVRMKLATEGIPQ----GGFSFQDAMNNSLAT 122

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMIRAI 180
           T   +    +  L+ EI  ++++I G+  A V+IV+PD  +F       + TA+VM+  +
Sbjct: 123 TDQERRQKYLYFLQNEIQNSLKTIDGVQDAIVNIVVPDQNAFVLSNTTNQATAAVML-TL 181

Query: 181 NPSVYKSAEAIRHL---VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI 237
            P V  S+  ++ +   V+ +V  L   +VTV+D+ GK+LTA   E +   ++ +   A+
Sbjct: 182 KPGVTLSSSQVKGIIDFVSKSVEGLKPENVTVIDNNGKILTA---ESDTTAENANTQFAL 238

Query: 238 QHEIEMNINKALAAFL----GVDNFRSAVVAELNMDTQQIREIVYDP----DSK-VERSI 288
           Q +++ ++  +L   L    G  N        LN D +    I Y P    D+K + RSI
Sbjct: 239 QKKVQEDLQNSLQTLLEQMFGPGNVVVRANVTLNFDKKTQDTIEYLPVQGNDNKGIVRSI 298

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           +  K+  ++  +Q  S+     N P V+           +  + E   NYEIN    +  
Sbjct: 299 QELKE--KATGTQGGSSPGTASNNPPVASTT---GNGTSDYSRTETTINYEINQIKTSLV 353

Query: 349 HDNYKLERLSIAVVVNK 365
               K+E +S+AVVVN+
Sbjct: 354 QAQGKIESISVAVVVNQ 370


>gi|255099415|ref|ZP_05328392.1| flagellar MS-ring protein [Clostridium difficile QCD-63q42]
          Length = 516

 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 113/414 (27%), Positives = 187/414 (45%), Gaps = 53/414 (12%)

Query: 20  TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN 79
           T+I +   VI + + L   A    +   Y  L+ +L+V D   IS  L    ID ++   
Sbjct: 27  TKIALGIGVIAICLALVFTA-ISASKNKYAVLFSELDVQDAADISAELESKKIDTKV--K 83

Query: 80  GSSISVPSSMVGKARIHLAAQGLPSSSSNS-GYELFDKVNSFGLTSFMQEITRVRALEGE 138
           GS+I VP + V K R+ LA    PS +S S G+ L D  +S GLT    +I + R ++GE
Sbjct: 84  GSTIYVPRTEVDKLRLELA----PSLTSGSKGFALMDDSSSIGLTDEEFQIKKQRMIQGE 139

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRH---LV 195
           I +TI+S   +   RVHI   +   F K  A P ++ +   + P        I+    L+
Sbjct: 140 IEKTIKSFPQVEDTRVHITFGESSVFEK-EAVPGSAAVYLMLKPGTTLEKNQIKSVMALI 198

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEME-RNI------------LGKSLSIVQAIQHEIE 242
           + +V N+   +V V+D+   LL+   +E  N+            + K+ +  QA+  ++E
Sbjct: 199 SGSVTNIPEKNVQVIDNKMNLLSEGILEDENVNENNQPINSGISVDKNKASEQALNKQLE 258

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS-- 300
            +I + L    G    ++ V A+L+ DT +  EI  DPD    +  R SK++ +S T+  
Sbjct: 259 KSILEILEPIFGKGKVKATVNADLSFDTAEKTEIKIDPDKVAIKETR-SKNSSKSATNNV 317

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           Q   A    Q   + ++ +  L  S E                        Y+  ++   
Sbjct: 318 QGVDANMNNQGNNNGTNTEDSLDESFE------------------------YETGKIETH 353

Query: 361 VVVNKGRLTEVLGRSADQGKI-DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
            +V  G L  +    A  GKI     A++  IV+ A G++  RGDT+++ SM F
Sbjct: 354 TIVAPGELNRLTASVAIDGKIAKGVQADVEDIVNNAIGMDGARGDTLSVVSMVF 407


>gi|166712032|ref|ZP_02243239.1| flagellar MS-ring protein [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 574

 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 124/569 (21%), Positives = 247/569 (43%), Gaps = 38/569 (6%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
           Q+F    SL  TR L + ++I + +   +A  F+   P Y +LY  L+       +  L 
Sbjct: 19  QWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAADLLR 78

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
            A I ++I     +ISVP   +  AR+ LA  GL    +  G+EL +K   FG++ F++ 
Sbjct: 79  TAQIPYKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQFVEN 138

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYK 186
                ALE E++RTI ++  +  ARVH+ +P   +F +     +ASV+  +R        
Sbjct: 139 ARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQGLERN 198

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN-- 244
             +AI +LVA+++P++    VTV+D +G++L+  +   +    +    Q  + E   N  
Sbjct: 199 QVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESSYNQR 258

Query: 245 INKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           I + L    G          +++    ++ RE+ Y+ +    RS +++  +  +  + P+
Sbjct: 259 IRELLEPMTGPGRVNPETSVDMDFSVVEEAREL-YNGEPAKLRSEQVNDTS--TTATGPQ 315

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE-------- 355
                  N P                    + +     T+S  +   NY+L+        
Sbjct: 316 GPPGATSNSPGQPPAPAAAGAPGTPAAANGQATAAAAPTESSKSATRNYELDRTLQHTRQ 375

Query: 356 ------RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
                 R+S+AV+++        G+  +Q    + L  I  +V  A G ++ RGDT+++ 
Sbjct: 376 PAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQAVGFDAARGDTVSVM 435

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL--GL--HALRRLHN 465
           +  F+   +  +G     + +     +      L  LVG ++V  L  G+    LR+L  
Sbjct: 436 NAPFVREAV--AGEEGPKWWEDPRVQY-----GLRLLVGAVVVLALLFGVVRPTLRQLTG 488

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
           +   K+ +  G +  +P          ++ +++  L    +D  S  +  +  I    + 
Sbjct: 489 VTPIKEKQRKGGNDDTP----QNADVRMVDDEDSLLPQMGEDTASIGQERKPAIALPDAY 544

Query: 526 QSDLRLL-HMIEINEERFAKILRKWARSE 553
           +  +R+    ++ + +R A++++ W  SE
Sbjct: 545 EERMRVAREAVKADSKRVAQVVKGWVASE 573


>gi|315179670|gb|ADT86584.1| Flagellar biosynthesis/type III secretory pathway lipoprotein
           [Vibrio furnissii NCTC 11218]
          Length = 579

 Score =  107 bits (266), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 109/431 (25%), Positives = 204/431 (47%), Gaps = 30/431 (6%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           + +S  +  LY + E  DV  I   L   +I +R+ +    + VP   V + R+ LAA+G
Sbjct: 61  WSSSQSFRPLYGQQEQFDVGDIVSVLEAESISYRLQEQNGQVLVPEGEVARVRMLLAAKG 120

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           +  +   +G +   + +S G + FM+       LEGE+ RTI +++ +  ARVH+ +P  
Sbjct: 121 I-KAKLPTGLDSLQEDSSLGTSQFMETARYRHGLEGELVRTIIALNAVSNARVHLAIPRQ 179

Query: 162 GSF-RKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
             F R+ G  P+ASVM  ++A      +  EAI +LV  +V  +    V+V+D  G+LL+
Sbjct: 180 TLFVRQNGEAPSASVMLELKAGEDLKPEQVEAIINLVVGSVTGMKPEFVSVIDQYGRLLS 239

Query: 219 ANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQIR 274
           A+    +   +  K L   + ++ ++       L   +G  NFR  V A+++    ++ +
Sbjct: 240 ADVASGDSGKVNAKYLDYQKNLEKQVIQRAADMLTPIVGPSNFRVQVAADMDFSRVEETQ 299

Query: 275 EIVYD-PDSKVERSIRLSKDAQRSETSQPESAVTVE-QNMPHVSDRKVPLPRSLENTDKK 332
           EI+ + P  + E ++      Q +   Q    +     N P V+  K P   S  +  + 
Sbjct: 300 EILDNTPVVQNEHTV------QNNSIDQIALGIPGSLSNQPPVTGEK-PTQDSQNSNARS 352

Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV 392
           E    Y + +    T +   ++++L+++V++N        G S DQ K      EI+ ++
Sbjct: 353 EINRQYAVGSSVRRTQYQQGQVKKLNVSVLLNSAAAPNGTGWS-DQEK-----TEISAML 406

Query: 393 SAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452
             A GI++ RGD++++ S +F   ++    ++   + D       TV   L +++G LL 
Sbjct: 407 MDAVGISAARGDSLSLMSFNFTPIEIEAPPSIPW-WQD------PTVQQPLRYVIGGLLG 459

Query: 453 TFLGLHALRRL 463
             +    LR L
Sbjct: 460 MAMIFFVLRPL 470


>gi|256750740|ref|ZP_05491625.1| flagellar M-ring protein FliF [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256750323|gb|EEU63342.1| flagellar M-ring protein FliF [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 503

 Score =  107 bits (266), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 103/375 (27%), Positives = 180/375 (48%), Gaps = 28/375 (7%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +QL  F+       + ++ I+A ++ + I L +   + VN P+Y  LY  L + D   + 
Sbjct: 10  EQLTDFWNKFDKKQKIQLGIIAILLFIGISLLV---YLVNRPNYVVLYSDLSIKDAGAVV 66

Query: 65  VAL-SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN-SFGL 122
             L +E  I ++IS++G++I VP     + R+ LA +G+P      G+   D +N S   
Sbjct: 67  EKLKTEFKIPYKISNDGTTILVPVQYKDEVRMKLATEGIPQG----GFSFQDAMNNSLAT 122

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMIRAI 180
           T   +    +  L+ EI  ++++I G+  A V+I +PD  +F       + TA+VM+  +
Sbjct: 123 TDQERRQKHLYFLQNEIQNSLKTIDGVQDAIVNIAVPDQNAFVLSNTTNQATAAVML-TL 181

Query: 181 NPSVYKSAEAIRHL---VAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQA 236
            P V  S+  ++ +   V+ +V  L   +VTV+D+ GK+LTA ++          ++ + 
Sbjct: 182 KPGVTLSSSQVKGIIDFVSKSVEGLKPENVTVIDNNGKILTAESDSTAENANTQFTLQKK 241

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP----DSK-VERSIR-L 290
           +Q +++ +I   L    G  N        LN D +    I Y P    D+K + RSI+ L
Sbjct: 242 VQEDLQNSIQTLLEQVFGPGNVVVRANVTLNFDKKTQDTIEYLPVQGNDNKGIVRSIQEL 301

Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
            + A  ++   P  A T   N P +S           + ++ E   NYEIN    +    
Sbjct: 302 KEKATGTQGGSP--AGTATNNPPVISTTG----NGTSDYNRTEITINYEINQIKTSLVQA 355

Query: 351 NYKLERLSIAVVVNK 365
             K+E +SIAVVVN+
Sbjct: 356 QGKIENISIAVVVNQ 370


>gi|94495429|ref|ZP_01302009.1| flagellar M-Ring protein [Sphingomonas sp. SKA58]
 gi|94424817|gb|EAT09838.1| flagellar M-Ring protein [Sphingomonas sp. SKA58]
          Length = 586

 Score =  107 bits (266), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 109/443 (24%), Positives = 195/443 (44%), Gaps = 52/443 (11%)

Query: 38  AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97
           AA   +  P   +L+  L  SD + ++  L +  + +   DN  +++V      KA++ L
Sbjct: 67  AAWLALREPPQRDLFRGLPDSDKSAVAQVLDQNGVRYDF-DNSGAMTVAEDDYFKAKMML 125

Query: 98  AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
           AAQGLP S+ + G  + D +   G +  ++      A E ++ARTI++I  +  A+VH+ 
Sbjct: 126 AAQGLPKSAPD-GNSMIDSL-PMGASRAVEGEKLRSAREMDLARTIEAIDSVETAKVHLA 183

Query: 158 MPDMGSFRKIGARPTASVMIRAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
           +     F +   +P+ASVM+R         +   AI HLVA+++P L   D++++D  G+
Sbjct: 184 VEPPSVFLRERTKPSASVMLRLAQGRQLTQQQVSAIVHLVASSIPELSPDDISLVDQNGR 243

Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LLT N+       + L++   I+     ++   L   LG  NF + V AELN   +Q   
Sbjct: 244 LLTDNDGNAGD-DRQLAMQGKIEDRYRQSVIALLTPILGDGNFSTEVHAELNFAERQATR 302

Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE-QNMPHVSDRKVPLPRSLENTD---- 330
             Y  D       RL  +A  S  S P      E   +P     + P+  ++  T+    
Sbjct: 303 ETYPQD-----EARLRSEAG-SWASDPRGQGKGEASGIPGALSNQAPVDPTVTQTNPNGQ 356

Query: 331 ---------------------KKEE--QSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367
                                K EE    N+E+  +          ++RLS+AV ++ G 
Sbjct: 357 AVTQGQTAQAQGPGTPADPLMKTEETFNRNFELGREVSVVRDATGTVKRLSVAVALDNG- 415

Query: 368 LTEVLGRSADQGKIDS--YLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425
                      GK  S   +A +  +V  A G +  RGD + ++S  F++     +   +
Sbjct: 416 ---------PDGKPRSPQEIAALEALVKGAVGFDQTRGDVVALSSRSFVKEATAETPWYE 466

Query: 426 VSFMDILSRHFATVINALVFLVG 448
             ++  L+R+ + ++ AL+ + G
Sbjct: 467 ADWIAPLARNVSALLVALLVIFG 489


>gi|295399809|ref|ZP_06809790.1| flagellar M-ring protein FliF [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312111679|ref|YP_003989995.1| flagellar M-ring protein FliF [Geobacillus sp. Y4.1MC1]
 gi|294978212|gb|EFG53809.1| flagellar M-ring protein FliF [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311216780|gb|ADP75384.1| flagellar M-ring protein FliF [Geobacillus sp. Y4.1MC1]
          Length = 529

 Score =  107 bits (266), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 101/388 (26%), Positives = 172/388 (44%), Gaps = 31/388 (7%)

Query: 38  AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97
           A  FF        LY  L   +  +I   L + NI   ++DNG++I VP  +    ++ L
Sbjct: 40  ATVFFATRTEMVPLYSNLTPQEAGQIKETLDQRNIKSEVADNGTTIKVPKDLADSLKVEL 99

Query: 98  AAQGLPSSSSNSG---YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARV 154
           AA+G+P    NSG   Y  F K  SFG+T     + ++ A++ E+A  I+SI+G+  A+V
Sbjct: 100 AAEGIP----NSGMIDYSFFGKNASFGMTDNEFNVVKLEAMQNELANLIKSINGVEDAKV 155

Query: 155 HIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLD 211
            I +P    F        ++ ++    P    S + I+   HLV+ +VPNL   ++ +++
Sbjct: 156 MINLPQPSVFASDNQGEASASIVLKTKPGYQFSDQQIKALYHLVSKSVPNLPTDNIVIMN 215

Query: 212 STGKLLTANEMERNILGKSLSIVQAIQHEIEMNI----NKALAAFLGVDNFRSAVVAELN 267
              +       E+N  G + +  Q I+ +IE +I     + L   +G D    +V A+++
Sbjct: 216 QFFEYFDLKNDEKNSTGTTFAAQQEIKQQIERDIQQRVQRMLGTMMGQDKVAVSVTADID 275

Query: 268 MDTQQIRE--IVYDPDSKVERSIRLS----KDAQRSETSQPESAVTVEQNMPHVSDRKVP 321
             TQ+ RE  +V   D +    I +S    ++      + P        N   V + +  
Sbjct: 276 F-TQERREENLVAPVDEENNEGIAISVQRIQETYSGNGAPPGGTAGTGAN--EVPNYQAG 332

Query: 322 LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI 381
              +  N ++ EE  N E+N          YK+  L I V+V      +    S  Q  I
Sbjct: 333 ANEANGNYERTEETINNEVNRIKKNIVESPYKIRDLGIQVMVEPPDPKD--PNSLPQQTI 390

Query: 382 DSYLAEINKIVSA--ATGINSRRGDTIT 407
           D    +I KI+     T I+ + G T+T
Sbjct: 391 D----DIQKILGTIVRTSIDKQYGQTLT 414


>gi|229896276|ref|ZP_04511446.1| Flagellar M-ring protein fliF [Yersinia pestis Pestoides A]
 gi|229701199|gb|EEO89228.1| Flagellar M-ring protein fliF [Yersinia pestis Pestoides A]
          Length = 475

 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 117/482 (24%), Positives = 220/482 (45%), Gaps = 72/482 (14%)

Query: 110 GYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA 169
           G+EL D+   FG++ F ++I   RALEGE++RTI ++  ++  RVH+ MP    F +   
Sbjct: 19  GFELLDQ-EKFGISQFSEQINYQRALEGELSRTIGTLGPVLNVRVHLAMPKPSLFVREQK 77

Query: 170 RPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERN 225
            PTASV + A+ P          AI ++V+++V  L  G+VTV+D TG+LLT ++   R+
Sbjct: 78  SPTASVTL-ALQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLLTQSDSAGRD 136

Query: 226 ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVE 285
           +    L     +++  +  I   LA  +G  N  + V A+++  +++  +  Y P+    
Sbjct: 137 LNASQLKFTSEVENRYQRRIENILAPMVGNGNVHAQVTAQVDFASREQTDEEYKPNQAAN 196

Query: 286 ----RSIRLSKDAQRSETS--QPESAVTVEQNMPHVSDRKVPLPRSL------------- 326
               RS ++S   Q   T+      A++ +  +  ++  ++P P                
Sbjct: 197 QGAVRSQQVSTSEQLGGTNVGGVPGALSNQPPVAPIAPIEIPQPAGAAANNAAPANTAAT 256

Query: 327 -------------ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN--KGRLTEV 371
                         +  + ++ +N+E++     T      ++RLS+AVVVN    +  + 
Sbjct: 257 ANANTTATAAKASSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVNYTSDKAGKP 316

Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVS 427
           +  S DQ      LA++  +   A G ++ RGDT+ + +  F  +      ++    Q S
Sbjct: 317 IALSKDQ------LAQVESLTREAMGFSTVRGDTLNVVNTPFTASDDTRGSSLPFWQQQS 370

Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISS 487
           F D L       +NA  +L+  L+   L    LR +     AKK +V  K+  S   +++
Sbjct: 371 FFDQL-------LNAGRYLLILLVAWILWRKLLRPML----AKK-QVADKAAAS---VNN 415

Query: 488 AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILR 547
            V T         +  S +++    +N Q R+++ V  Q   R+  + + +    A ++R
Sbjct: 416 IVQTAQAAE---TVKQSKEELALRKKN-QQRVSAEVQAQ---RIRELADKDPRVVALVIR 468

Query: 548 KW 549
           +W
Sbjct: 469 QW 470


>gi|85711042|ref|ZP_01042102.1| flagellar M-ring protein [Idiomarina baltica OS145]
 gi|85694955|gb|EAQ32893.1| flagellar M-ring protein [Idiomarina baltica OS145]
          Length = 570

 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 119/478 (24%), Positives = 205/478 (42%), Gaps = 55/478 (11%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           +I+D+L  F      + R  ++ILA  I V I +F+    +     +  L  K+E   + 
Sbjct: 29  SIVDKLANF-----DMLRQVVVILALAICVAIAIFIM--LWAQESTFRPL-AKMETEQLV 80

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNS-GYELFDKVNSF 120
                L   NI++++  +G+ +SVP       ++ L   G+    S S G ++      F
Sbjct: 81  GTLDYLDANNIEYKV--DGNVVSVPEENYDAVKLQLTRAGVDYGQSESNGSDILMSEPGF 138

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           G++  ++    + + E ++AR I+ +  + AARV + +P    F +   +P ASVM+   
Sbjct: 139 GVSQRLERERLIHSREIQLARAIEEMRAVSAARVLLAVPKENVFARREKQPKASVMLNVK 198

Query: 181 NPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQ 238
                   E  +I  +VA++V +L+   VTV D  G+LL +          +L+   + +
Sbjct: 199 GNQSLSEEEIASIVDMVASSVTSLETSQVTVTDQNGRLLNSGSQ------SALAATNSRE 252

Query: 239 HEIEMN--------INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290
           +++E          I+  L   LG DN+ + V   ++    +  + +Y+PD         
Sbjct: 253 YQLERKREEEYLNKIDSILIPVLGYDNYTAQVDVTMDFTQSEKTQRLYNPDMP------- 305

Query: 291 SKDAQRSE-TSQPESAVTVEQNMPHVSDRKVPLP-------------RSLENTDKKEEQS 336
              A RSE T +  SA T    +P     + PL              R    +  +E   
Sbjct: 306 ---AIRSEMTVENRSAGTAVGGIPGALSNQPPLESNIPEQATGAGSQRDATGSMHREATR 362

Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT 396
           NYE++     T   +  +ERLS++V VN+   T   G    Q      LA I +++    
Sbjct: 363 NYELDNTVSYTRSQSGTIERLSVSVAVNQPMTTNADGEQVPQPASPEQLANIRRLLQGGI 422

Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMD--ILSRHFATVINALVFLVGTLLV 452
           G +  RGDTI + S+ F   QL + G  + +  D     R    V+  LV LV  L V
Sbjct: 423 GFDLSRGDTIEVVSVPFA--QLPDLGAGETAMWDEPWFWRAARLVMGGLVILVLILAV 478


>gi|310659045|ref|YP_003936766.1| flagellar m-ring protein flif [Clostridium sticklandii DSM 519]
 gi|308825823|emb|CBH21861.1| Flagellar M-ring protein FliF [Clostridium sticklandii]
          Length = 521

 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 108/403 (26%), Positives = 189/403 (46%), Gaps = 45/403 (11%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           ++L  + +  +++  A  F+   P+Y  LY  +++   + ++  L E  I +R++ + +S
Sbjct: 24  IMLGGLAVGLVVITTAMIFYFTRPNYVTLYRDIDLKTASEVTSQLDELKIPYRLNQD-NS 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           ISVP + + KA++ LA  GLP ++ +  Y      NS  ++   +   R  AL+ EIA  
Sbjct: 83  ISVPDTYINKAKVDLAGAGLPEATFD--YNDLINRNSMFMSDDEKNQARNYALQNEIANV 140

Query: 143 IQSISGIVAARVHIVMPDMGSF----RKIGARPTASVMIRAINPSV---YKSAEAIRHLV 195
           IQSI G+  A V++ +P    F     KI A+  ASV +  ++  +     S + I  LV
Sbjct: 141 IQSIPGVKKAFVNLSIPKTQEFILQENKIDAK--ASVFLN-LDDKISLDQTSIQGITMLV 197

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAF 252
           A +V  L   +VTV    G++L  +  + N   +   +L +   ++ ++E ++N  LA  
Sbjct: 198 ANSVEGLKPENVTVHGPNGQVLNEDSTDTNNILVSQTNLELQNKVKLDVEKSLNNFLAPI 257

Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDP--DSKVERSIR-LSKDAQRSETSQ-----PES 304
            G  N       +LN DT   +   + P  + + +  +R L ++ ++ E SQ     P  
Sbjct: 258 YGYGNVSVMASVKLNFDTDNTQSKSFAPPIEGETDGLVRSLQENIEKVENSQEAVGNPGV 317

Query: 305 AVTVEQNMPHVSDRKVPLPRSLE-NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
               E+    V D     P +L  N DK E   NYE+N           ++E L++AVV+
Sbjct: 318 DANAEE---EVVDYATLDPNALNSNYDKNERIVNYELNEIVKTVEKAKGQIENLTVAVVL 374

Query: 364 NK-----GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR 401
           NK     G LTE                EI  +++AATG+ ++
Sbjct: 375 NKDSLEGGELTE------------EQRTEIASLINAATGLETK 405


>gi|254461781|ref|ZP_05075197.1| flagellar M-ring protein FliF [Rhodobacterales bacterium HTCC2083]
 gi|206678370|gb|EDZ42857.1| flagellar M-ring protein FliF [Rhodobacteraceae bacterium HTCC2083]
          Length = 567

 Score =  106 bits (265), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 108/428 (25%), Positives = 200/428 (46%), Gaps = 52/428 (12%)

Query: 24  ILASVILVPIMLFMAARFFV--NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81
           ++A+V LV I LF    F+V    P    L+  L  S+   +  AL     D +I     
Sbjct: 19  VVAAVFLVAIGLF----FYVTLQVPDRTTLFASLPESEKPAVMEALRANGTDVQIDPITG 74

Query: 82  SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
            ++VP      +R+ LA+QGLP+S  + GY +   +   G +  ++ +   ++ E E++ 
Sbjct: 75  EMTVPVGDYHNSRLSLASQGLPTSMPD-GYSVLSDM-PMGTSRSVERMRLKQSQELELSL 132

Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVA 196
           +I +I  +  +RVH+ +P+  +F +    PTASV +     RA++    +  +AI HLV+
Sbjct: 133 SIDNIDVVAGSRVHLAIPERSAFARNAQNPTASVFVQLKLGRALS---SQQVQAIVHLVS 189

Query: 197 AAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLG 254
           ++V NL    VTV+D  G+LL+   ++    +  + L     ++      I   L   +G
Sbjct: 190 SSVANLPKSAVTVIDQNGRLLSDSVDDPATTLADRQLDYQLKLEDIYRRRIESLLTPVVG 249

Query: 255 VDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV-----TVE 309
             N  + V  +++   +++ + +  PD   + ++   + A   E S P   V        
Sbjct: 250 PGNVSAQVSLDIDFTRREVTQDMVVPD---QSALLSEQSALEEEISAPSRGVPGAFTNTP 306

Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQS------------NYEINTKSIATTHDNYKLERL 357
             MP    R   +  + E  D + E+S            NYE++ K  + +     L  +
Sbjct: 307 PQMPSFERR---VESNGEEGDAQAEESSSAKMRSSNNLRNYEVSRKVSSESSPMALLTGV 363

Query: 358 SIAVVVNKGRLTEVLGRSADQGK-------ID-SYLAEINKIVSAATGINSRRGDTITIT 409
            +AV++   R    +G S + G+       ID   + EI  +V++  GIN+RRGDT+T++
Sbjct: 364 HVAVLL---RELSPIGESVEGGEAPLMQIGIDPEKIEEIKALVASTVGINARRGDTLTVS 420

Query: 410 SMDFLENQ 417
           SM ++ ++
Sbjct: 421 SMPYISSE 428


>gi|299066535|emb|CBJ37725.1| putative Flagellar M-ring protein FliF [Ralstonia solanacearum
           CMR15]
          Length = 506

 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 106/415 (25%), Positives = 183/415 (44%), Gaps = 36/415 (8%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
            ++  ++L R  ++  A  I V + +F    ++     Y  L+  L   D   +   L  
Sbjct: 11  LWEGLSALARAGLVAGAICIAVAMGVFS---YWALHTDYQVLFSDLTPQDSAAMVAELDR 67

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
             + +++ D G+SI V    V K RI L  + LP   +  G ELF+  + FG+T F Q+I
Sbjct: 68  LKVPYQLGDQGTSILVARDQVYKTRIKLMGKDLPLHGA-VGLELFNN-SDFGMTEFAQKI 125

Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE 189
              RAL+GE+ RTI S+S I   RVH+ +P+ G F++ G+R  A+V +      V +  +
Sbjct: 126 NYQRALQGELTRTILSLSEIHDVRVHLALPEQGLFKQAGSRAKAAVTLTLKQGQVLRPEQ 185

Query: 190 --AIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAIQHEIEMN 244
              I+ LV+A+VP +   DVT++D  G  LT     E E +     L + +  ++ ++  
Sbjct: 186 ITGIQRLVSASVPGIATQDVTIVDQHGVALTRASGAEGEIDATSGRLDLKKETENYLQRK 245

Query: 245 INKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           +   L    G     ++V   L+MD  Q   E V    S+   +              P 
Sbjct: 246 VADVLERSFGPGQSIASVDVTLDMDRIQTTTEDVIPAASRTGHT--------------PS 291

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
             VT E+    V D   PL   + +        + +  T        +Y + R    VV 
Sbjct: 292 GVVTRERE--SVRDNGAPLDTRVADASGGARGGSSQRET--------DYAVGRRVEQVVS 341

Query: 364 NKGRLTEVLGRSADQGKIDSYLAE-INKIVSAATGINSRRGDTITITSMDFLENQ 417
             G +  +   +  +  +D+   E + ++V+AA G +  RGD++ +  +  L  Q
Sbjct: 342 QPGSVRRIQVVAMVRTPLDADQQERLRRLVAAAAGASFERGDSVVVQPLGALVTQ 396


>gi|149189866|ref|ZP_01868146.1| flagellar M-ring protein [Vibrio shilonii AK1]
 gi|148836352|gb|EDL53309.1| flagellar M-ring protein [Vibrio shilonii AK1]
          Length = 582

 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 112/435 (25%), Positives = 201/435 (46%), Gaps = 38/435 (8%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           + +S  Y  LY + E  D+  I   L    I +R+ +    + V    V K R+ LAA+G
Sbjct: 64  WSSSQSYRPLYSQQERFDIGEIVSVLESEGIAYRLQEQNGQVLVAEGQVAKIRMLLAAKG 123

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           +  +   +G +   + +S G + FM+       LEGE+ RTI S++ I  ARVH+ +P  
Sbjct: 124 V-KAQLPTGLDSLKEDSSLGTSQFMENARYRHGLEGELVRTIISLNAISNARVHLAIPRQ 182

Query: 162 GSF-RKIGARPTASVMIRAINPS---VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
             F R+ G  P+ASVMI  + P         EAI +LV  +V  +    V+V+D  G+LL
Sbjct: 183 TLFVRQQGEEPSASVMIE-LKPGEDLKPDQVEAIINLVVGSVTGMKPEFVSVIDQYGRLL 241

Query: 218 TAN---EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM----DT 270
           +A+        +  K L   + ++ +I       L   +G  N+R  V A+++     +T
Sbjct: 242 SADVGSAEAGKVNAKYLEYQKNVEKQIIQRAADMLTPIVGPSNYRVQVAADMDFSRVEET 301

Query: 271 QQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD 330
           Q+I +   +P  + E SI+ +    +     P S      N P V+  +VP   S     
Sbjct: 302 QEILDT--NPVVRNEHSIQ-NNTIDKIALGIPGSL----SNQPPVTG-EVPTNDSQNTNA 353

Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK--IDSYLAEI 388
           + E    Y + +    T +   ++ +LS++V++N+         +A  G     +  A+I
Sbjct: 354 RSELNRQYAVGSSVRRTQYQQGQISKLSVSVLLNES--------AAPNGTAWTPAERAQI 405

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
           + +++ A GI++ RGD++++ S +F   ++  +      + D       TV   L +++G
Sbjct: 406 STMITDAVGISADRGDSLSLMSFNFTPIEI-EAPPAMPWWQD------PTVQQPLRYVIG 458

Query: 449 TLLVTFLGLHALRRL 463
            +L   +    LR L
Sbjct: 459 GMLGMAMIFFVLRPL 473


>gi|119503663|ref|ZP_01625746.1| flagellar M-ring protein [marine gamma proteobacterium HTCC2080]
 gi|119460725|gb|EAW41817.1| flagellar M-ring protein [marine gamma proteobacterium HTCC2080]
          Length = 243

 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/195 (33%), Positives = 106/195 (54%), Gaps = 15/195 (7%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEAN-IDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           +   P +  LY  +  +D N  +V+L +AN I + ++     +SVPS  + +AR+ LA++
Sbjct: 41  WAMKPDFQPLYGAMSPAD-NATAVSLLQANGIPYTMAGGSGLLSVPSDQIPQARMALASE 99

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           G P      G+E   +    GL+SFM++    RA+E E+ARTI ++  +  ARVH+    
Sbjct: 100 GFPRGG-GVGFESLYQEQEMGLSSFMEQARYNRAVEAELARTISAMDSVKGARVHVAASK 158

Query: 161 MGSFRKIGARPTASVMIRAINPSVY-------KSAEAIRHLVAAAVPNLDMGDVTVLDST 213
             +F + G  P+ASVM+     S+Y       +    I HLVA+++P L    V+V+D  
Sbjct: 159 QSAFIRRGQEPSASVMV-----SLYPGRGLSERQLAGIVHLVASSIPELQASKVSVVDQA 213

Query: 214 GKLLTANEMERNILG 228
           GKLL++ + E N  G
Sbjct: 214 GKLLSSQDGEDNDFG 228


>gi|219670159|ref|YP_002460594.1| flagellar M-ring protein FliF [Desulfitobacterium hafniense DCB-2]
 gi|219540419|gb|ACL22158.1| flagellar M-ring protein FliF [Desulfitobacterium hafniense DCB-2]
          Length = 537

 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 105/400 (26%), Positives = 186/400 (46%), Gaps = 23/400 (5%)

Query: 21  RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80
           +I+ +A+ + V I L ++  ++ ++P Y  ++ +L       I+  L E  + +++  NG
Sbjct: 24  KIITVAAPLAVAIAL-ISLLYWASNPSYVAIFTELTDIQAGEITSELDELKVKYKLGSNG 82

Query: 81  SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140
           S+I VP       R+ LA  GLP  S  S  E  +K    G T   + +     L+ E+ 
Sbjct: 83  SAILVPEKEAAGVRLKLANSGLPKGSEFSWSESLNKTR-VGETESDRRLRYNLGLQTELE 141

Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAA 198
            T++++S +  ARVH+ +P+   F +     TA+V +     S     +   I +L+AA+
Sbjct: 142 ATLKTLSNVKDARVHLNIPEETLFIEQQEATTAAVTLTLKEGSSITEDQIRGIANLLAAS 201

Query: 199 VPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFL----G 254
           V  L + DVT+LDS G  L+    E N  GK  +    ++   E N  K++ + L    G
Sbjct: 202 VKGLKLEDVTILDSNGNTLSDVLNEDNQPGKMTATQIQLKQLTEENTRKSVQSMLDKAFG 261

Query: 255 VDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP- 313
                    A LN D      + + P S +  S         + TS   +A  V+ N+P 
Sbjct: 262 AGKTIVRTNATLNFDQVTTDTVTHGPGSVLSES---HTTENTTNTSPGGTAPGVDTNVPG 318

Query: 314 HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373
           +++     +  S E T    +  N++++T           + RLS++V+++   +     
Sbjct: 319 YLAPDGTWITSSSEKTS---DTLNHQVDTTQEQRIKSPGDIARLSVSVLLDADSI----- 370

Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
            SADQ  ID  + +I  IV++A GI+  RGD I + ++ F
Sbjct: 371 -SADQ--IDDQIEKIEAIVASAAGIDRERGDEIQVAALPF 407


>gi|323341386|ref|ZP_08081630.1| putative flagellar M-ring protein fliF [Lactobacillus ruminis ATCC
           25644]
 gi|323091263|gb|EFZ33891.1| putative flagellar M-ring protein fliF [Lactobacillus ruminis ATCC
           25644]
          Length = 537

 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 116/454 (25%), Positives = 213/454 (46%), Gaps = 40/454 (8%)

Query: 23  LILASVILVPIMLF--MAARFFVNSP-HYDNLYVKLEVSDVNRISVALSEANIDFRISDN 79
           L+  +++L  I LF  +   +++N+   Y  L+  L  +D   IS  L   NI ++++D+
Sbjct: 21  LVKIAIVLGVISLFAIIGTVYYMNTRVEYSVLFSNLSEADAGTISQDLDSQNIKYKLADD 80

Query: 80  GSSISVPSSMVGKARIHLAAQG-LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           G +I V  + V + RI LA    LPSSS   G+ELFD   S   T   ++I   RAL GE
Sbjct: 81  GKTIMVDKTKVDQYRIDLAVDNKLPSSS--KGFELFDSA-SMMTTDEDRKIMYQRALTGE 137

Query: 139 IARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMIRAINPSVYKSA-EAIRHLV 195
           +  +I ++  +  A+V++ +P   +        +  AS+++     S+ K A + I  L 
Sbjct: 138 LENSIAALDDVDKAKVNLTIPKSDNVFDNSTSKKAKASIVLTLKGTSISKDAVQGIVALT 197

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANE-----MERNILGKSLSIVQAIQHEIEMNINKALA 250
             AV  LD  +V V+D TGK+L  NE        +   K + +    + ++E  I   + 
Sbjct: 198 TGAVQGLDKKNVKVVDQTGKILNKNEEDDASDSSSATSKYMKLKSQYEKQMEKKITGLIE 257

Query: 251 AFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQ 310
             +G    +++V  +LN D  + ++I    + ++ RS  +    +++E  Q ++   V  
Sbjct: 258 PVVGKGKVKASVNVDLNFDAVE-KKITNYSNPQI-RSENVQASGKQAEIKQAQTG-QVND 314

Query: 311 NMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTE 370
           N+ +V+        S   T       N E+NT++    +    + R++ +VV+N G L+ 
Sbjct: 315 NVDNVTGDANNDNASYNRT------VNNELNTETTKVINAPGSINRMTSSVVIN-GDLSA 367

Query: 371 VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMD 430
              R+            I K++  A G + +RGDT+++ +++F   +     TV    + 
Sbjct: 368 GDARN------------IRKLIQGALGYDKQRGDTVSVQAVNFARAKSTKKKTVAKKPVK 415

Query: 431 ILSRHF-ATVINALVFLVGTLLVTFLGLHALRRL 463
             +      +I A V  +GT++  FL +   RRL
Sbjct: 416 KTNWVLIGALIAAGVLTLGTII--FLVIRRRRRL 447


>gi|261407984|ref|YP_003244225.1| flagellar MS-ring protein [Paenibacillus sp. Y412MC10]
 gi|329929286|ref|ZP_08283039.1| flagellar M-ring protein FliF [Paenibacillus sp. HGF5]
 gi|261284447|gb|ACX66418.1| flagellar M-ring protein FliF [Paenibacillus sp. Y412MC10]
 gi|328936655|gb|EGG33098.1| flagellar M-ring protein FliF [Paenibacillus sp. HGF5]
          Length = 526

 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 185/366 (50%), Gaps = 32/366 (8%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           + +I+++A+V  V I L +    F  +  Y+  +  L  SD   I   L    I +++S+
Sbjct: 22  KQKIMLIATVAFVLIALVVLTMQFSKT-KYEVAFRDLNSSDAAGIISHLETQGISYKLSE 80

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK-VNSFGLTSFMQEITRVRALEG 137
           +G SI VPS+   K +I + +QGL  + +  G+E F+K  ++ G+T    E+  V AL G
Sbjct: 81  DGRSILVPSTSAAKVQIDVGSQGLVQNGT-IGFETFEKNASAIGMTDNEFEVKYVNALNG 139

Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGA--RPTASVMIRAINPSVYKSAEAI---R 192
           E+ R ++ + G+  A V + +P    F K G   + +ASV+++   P    + E I    
Sbjct: 140 EVERLLEKMQGVQDATVLLNLPKESVFAKNGNEDQASASVVVQ-FKPGYRPNQEVIDGYY 198

Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGK---SLSIVQAIQHEIEMNINKA 248
           +LV  A+PNL + ++T+ +   +LL TA   +  ++GK   + ++ +  ++++  N+ + 
Sbjct: 199 NLVKTAIPNLPIENITITNDEVELLATAKGGQGGLIGKVEENFALQKKFENDVRQNVQQF 258

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-DSKVERSIRLS-KDAQR--SETSQPES 304
           L+ ++G +     V ++LN D  Q +E +  P D +  + I LS ++ Q+  S T  P  
Sbjct: 259 LSQYMGSNKVNVLVASKLNFDQVQSKENIVTPVDEEEMKGIELSVQEIQKNYSGTGSPTG 318

Query: 305 AVTVEQNMPHVSDRKVP-LP----RSLENTDKKEEQSNYEIN--TKSIATTHDNYKLERL 357
            V        V +  VP  P        N+++  +  NYE+N  TK I  +   Y ++ L
Sbjct: 319 GVA------GVGEEAVPGYPSDSGSGETNSEELSKTVNYEVNRITKDIIASP--YTVKDL 370

Query: 358 SIAVVV 363
           +I V V
Sbjct: 371 TINVSV 376


>gi|254228798|ref|ZP_04922221.1| flagellar M-ring protein FliF [Vibrio sp. Ex25]
 gi|262396483|ref|YP_003288336.1| flagellar M-ring protein FliF [Vibrio sp. Ex25]
 gi|151938745|gb|EDN57580.1| flagellar M-ring protein FliF [Vibrio sp. Ex25]
 gi|262340077|gb|ACY53871.1| flagellar M-ring protein FliF [Vibrio sp. Ex25]
          Length = 569

 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 180/381 (47%), Gaps = 22/381 (5%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           + +S  +  LY + E  D+  I   L    + +R+ +    + VP   V K R+ LA++G
Sbjct: 52  WSSSQSFRPLYSQQERFDIGEIVSVLESEGVSYRMQEQNGQVLVPEGEVAKVRMLLASKG 111

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           +  +   +G +   + +S G + FM+       LEGE+ RTI S++ +  ARVH+ +P  
Sbjct: 112 V-KAKLPTGLDSLKEDSSLGTSQFMETARYRHGLEGELVRTIMSLNSVANARVHLAIPRQ 170

Query: 162 GSF-RKIGARPTASVMIRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
             F R+    P+ASVM+        KS   EAI +LV  +V  +    V+V+D  G+LL+
Sbjct: 171 TLFVRQNSENPSASVMLELKPGEDLKSEQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLS 230

Query: 219 AN---EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM-DTQQIR 274
           A+        +  K L   + ++ +I       L   +G  NFR  V A+++    ++ +
Sbjct: 231 ADVASAEAGKVNAKYLEYQKNVEKQIIQRAADMLTPIVGPSNFRVQVAADMDFSQVEETQ 290

Query: 275 EIVYD-PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKE 333
           EI+ + P  + E +I  +    +     P S      N P V+  +V    S     + E
Sbjct: 291 EILDNAPVVRNEHTIH-NNSVDQIALGVPGSL----SNQPPVTGEEVETNDSQNTNARSE 345

Query: 334 EQSNYEINTKSIATTHDNYKLERLSIAVVVN-KGRLTEVLGRSADQGKIDSYLAEINKIV 392
               Y + +    T +   ++E++S++V++N K     V    AD+        +I+ ++
Sbjct: 346 VNRQYAVGSSVRRTQYQQGQIEKMSVSVLLNSKASPDGVAWSEADK-------EQISNMI 398

Query: 393 SAATGINSRRGDTITITSMDF 413
             A GI++ RGD++++ S +F
Sbjct: 399 MDAVGISAARGDSLSLMSFNF 419


>gi|89895735|ref|YP_519222.1| hypothetical protein DSY2989 [Desulfitobacterium hafniense Y51]
 gi|89335183|dbj|BAE84778.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 537

 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 106/418 (25%), Positives = 192/418 (45%), Gaps = 25/418 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           I   +L+F+     L R + +I  +  L   +  ++  ++ ++P Y  ++ +L   +   
Sbjct: 8   IKQSILEFWGK---LSRPQKIITVAAPLAVAIALISLLYWASNPSYVAIFTELTDIEAGE 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I+  L E   ++++  NGS+I VP       R+ LA+ GLP  S  S  E  +K    G 
Sbjct: 65  ITSELDELKANYKLGSNGSAILVPEKEAAAIRLKLASAGLPKGSEFSWSESLNKTR-VGE 123

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T   + +     L+ E+  T++++S +  ARVH+ +P+   F +     TA+V +     
Sbjct: 124 TESDRRLRYNLGLQTELEATLKTLSNVKDARVHLNIPEETLFIEQQEATTAAVTLTLKEG 183

Query: 183 SVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240
           S     +   I +L+AA+V  L + DVT+LDS G  L+    E N  GK  +    ++  
Sbjct: 184 SSITEDQIRGIANLLAASVKGLKLEDVTILDSNGNTLSDVLSEDNQPGKMTATQIQLKQL 243

Query: 241 IEMNINKALAAFL----GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
            E N  K++ + L    G         A LN D      + + P + +  S         
Sbjct: 244 TEENTRKSVQSMLDKAFGAGKTIVRTNATLNFDQVTTDTVTHGPGAVLSES---HTTENT 300

Query: 297 SETSQPESAVTVEQNMP-HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
           + TS   +A  V+ N+P +++     +  S E T    +  N++++T           + 
Sbjct: 301 TNTSPGGTAPGVDTNVPGYLAADGTWITSSSEKTS---DTLNHQVDTTQEQRIKSPGDIA 357

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           RLS++V+++   +      SADQ  ID  + +I  IV++A GI+  RGD I + ++ F
Sbjct: 358 RLSVSVLLDADSI------SADQ--IDDQIEKIEAIVASAAGIDRDRGDVIQVAALPF 407


>gi|153951308|ref|YP_001398635.1| flagellar MS-ring protein [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152938754|gb|ABS43495.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 560

 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 118/434 (27%), Positives = 208/434 (47%), Gaps = 41/434 (9%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +L Q+ Q +++ T   + RI+I  S+++V   L   A F  +  + +N Y  L V +V+ 
Sbjct: 6   MLYQIGQLYQNLTR--KQRIVIATSIVVVVGFLVFLALFRGSGSNANNGYAVL-VENVSP 62

Query: 63  ISVA-----LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
            S A     L + NI +++ ++ + I VP   + + R+ +A++G     S  G+E FD  
Sbjct: 63  SSSAAIVAKLEQNNIPYKL-ESENKILVPQDQIYRQRMFIASEGF-IKDSRVGFEAFD-T 119

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM- 176
            +FG T+  Q++   RA+EGE+ARTI+++  I +A VHI  P    F +    PTASV+ 
Sbjct: 120 QAFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASVVV 179

Query: 177 -IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIV 234
            +R       K  + I+++V+AAVP L   +V + D +G  L   E  E +++   +   
Sbjct: 180 NVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIKFK 239

Query: 235 QAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293
              +  +E  I + LA F  G+D  + +V  + +   Q+ +  +YDP+  V     L++ 
Sbjct: 240 SDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLNE- 298

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEIN----TKSIATTH 349
            +R+    PE      Q +P       P    +E  D K +   Y+ N       ++ T 
Sbjct: 299 -ERTGRKDPEI-----QGVPGAVSNIGP----VEGLDNKGQIDTYKKNQVTTNNELSKTI 348

Query: 350 DNYKLE-----RLSIAVVVNKGRLTEVLGRSADQGK-----IDSYLAEINKIVSAATGIN 399
            N K +     R S AV ++ GR  +V+  + D            LA +  IV  A   +
Sbjct: 349 TNIKKQFATVLRTSAAVTID-GRYQDVVDENGDVKSEYVPLTKEELASVESIVKNAINFS 407

Query: 400 SRRGDTITITSMDF 413
           + RGD++ + ++ F
Sbjct: 408 ATRGDSVVVQNLPF 421


>gi|206895778|ref|YP_002246683.1| flagellar M-ring protein FliF [Coprothermobacter proteolyticus DSM
           5265]
 gi|206738395|gb|ACI17473.1| flagellar M-ring protein FliF [Coprothermobacter proteolyticus DSM
           5265]
          Length = 521

 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 91/379 (24%), Positives = 166/379 (43%), Gaps = 23/379 (6%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           +++N P Y  L+  L       I   L   N+ +++S +G+SI VP+  V   R+ LA+ 
Sbjct: 43  YYLNRPQYALLFSDLMPEQAQAIVSQLESQNVRYKLSSDGASIYVPNDKVTSLRLELASS 102

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GL   S+  GYELFD +++  LT   Q+I   RALEGE+ RTI  + G+ +  VH+ +P 
Sbjct: 103 GL-VGSTKPGYELFDNISNIFLTQEEQQIMYQRALEGELERTISGMPGVKSVSVHLSLPQ 161

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSA---EAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
              +     +     +   + P    SA   EAIR LVA AV  +   +V + +++  +L
Sbjct: 162 RSLWTVTSTQTAQGAVYLTLKPGYSLSANQVEAIRQLVAHAVEGMSPENVVIAEASTGIL 221

Query: 218 TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
             +  +  +    L I + +       I   L    G +N   +   ++ +  Q I+   
Sbjct: 222 AGDLAQSGVDKGYLEIKKQLDELYASKIRSFLGQTFGPENIMVSADVDVEVTKQNIQSET 281

Query: 278 YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP---HVSDRKVPLPRSLENTDKKEE 334
           +   +    S   S  +  S      +A  V   +P   + S  + P          +++
Sbjct: 282 WGNTATKNVSDTESWSSSSSSGGPVGTATNVPGAIPSYVYTSTGEGPY------NYYRQQ 335

Query: 335 QSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSA 394
           Q NYEI+           +++ + IA +V+     +    ++           +  ++++
Sbjct: 336 QINYEISRTISEIVPQEVEIKNVKIAAIVDSSVFKDYAVTAST----------VESLIAS 385

Query: 395 ATGINSRRGDTITITSMDF 413
           A G+++ RGD   +TSM F
Sbjct: 386 AAGLDNARGDVALVTSMPF 404


>gi|56460308|ref|YP_155589.1| flagellar MS-ring protein [Idiomarina loihiensis L2TR]
 gi|56179318|gb|AAV82040.1| Flagellar basal body M-ring protein [Idiomarina loihiensis L2TR]
          Length = 570

 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 111/448 (24%), Positives = 197/448 (43%), Gaps = 24/448 (5%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           R  I++LA  I V I +F+    +     Y  L  +LE  ++      +    I++++  
Sbjct: 42  RQVIVVLALAICVAIAVFIM--LWAQESTYRPLG-QLETEELISTLDYMDANGIEYQVE- 97

Query: 79  NGSSISVPSSMVGKARIHLAAQGLP-SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137
            G+++SVP       ++ L   G+   +S+N+G E+      FG++  ++    + + E 
Sbjct: 98  -GNTVSVPEENYDAIKLQLTRAGVDYGNSTNNGSEILMSEPGFGVSQRLERERLIHSREV 156

Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLV 195
           ++AR I+ I  + AARV + +P    F +    P ASVM+     +     E  +I  +V
Sbjct: 157 QLARAIEEIKKVSAARVLLAVPKENVFARREKEPKASVMLNVRGGTSLSEEEVASIVDMV 216

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEM---NINKALAAF 252
           A++V  L+   VTV D  G+LL +   +  +  KS    Q  Q   E     I+  L   
Sbjct: 217 ASSVTGLNTESVTVTDQAGRLLNSGS-QSALAAKSSREYQIEQKREEAYLEKIDSILIPV 275

Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS-IRLSKDAQRSETSQPESAVTVEQN 311
           LG DN+ + V   ++   ++  +  ++PD    RS + +   +  S       A+T   N
Sbjct: 276 LGYDNYTAQVDVTMDFTQREETQRQFNPDMPAIRSEMTVENRSMGSAIGGIPGALT---N 332

Query: 312 MPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
            P + D  +P              +  +E   NYE++     T +    ++RLS++V VN
Sbjct: 333 QPPL-DSDIPEEAGDGTAGGGATGSTHREATRNYELDNSVTYTRNQTGTIKRLSVSVAVN 391

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424
              +T   G    Q +    +A I +++    G +  RGD+I + S+ F +     +G  
Sbjct: 392 HEAITNEAGEGETQARSAEEIANIRRLLQGGLGFDINRGDSIEVVSVPFAQLPDLGAGET 451

Query: 425 QVSFMDILSRHFATVINALVFLVGTLLV 452
            V       R F  V+ ALV +V  L V
Sbjct: 452 PVWEEPWFWRAFRLVMGALVIMVLILAV 479


>gi|153831728|ref|ZP_01984395.1| flagellar M-ring protein FliF [Vibrio harveyi HY01]
 gi|148872238|gb|EDL71055.1| flagellar M-ring protein FliF [Vibrio harveyi HY01]
          Length = 556

 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 98/382 (25%), Positives = 184/382 (48%), Gaps = 25/382 (6%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           + +S  +  LY + E  D+  I   L    I +R+ +    + VP   V + R+ LA++G
Sbjct: 38  WSSSQSFRPLYSQQERFDIGEIVSVLESEGISYRMQEQNGQVLVPEGEVARIRMLLASKG 97

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           +  +   +G +   + +S G + FM+       LEGE+ RTI S++ +  ARVH+ +P  
Sbjct: 98  V-KAKLPTGLDSLKEDSSLGTSQFMETARYRHGLEGELVRTIMSLNAVANARVHLAIPRQ 156

Query: 162 GSF-RKIGARPTASVMIRAINPS---VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
             F R+    P+ASVM+  + P      +  EAI +LV  +V  +    V+V+D  G+LL
Sbjct: 157 TLFVRQNTENPSASVMLE-LKPGEDLKPEQVEAIINLVVGSVTAMKPEFVSVIDQYGRLL 215

Query: 218 TANEMER---NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM-DTQQI 273
           +A+        +  K L   ++++ +I       L   +G  NFR  V A++N    ++ 
Sbjct: 216 SADVASAEAGKVNAKYLEYQKSVEKQIIQRAADMLTPIVGPSNFRVQVAADMNFSQVEET 275

Query: 274 REIVYD-PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332
           +EI+ + P  + E +I+ +    +     P S      N P V+  + P   S     + 
Sbjct: 276 QEILDNAPVVRNEHTIQ-NNSVDQIALGIPGSL----SNQPPVTG-ETPTNDSQNTNARS 329

Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS-ADQGKIDSYLAEINKI 391
           E    Y + +    T +   ++E+LS++V++N     + +  S AD+ +I + + +    
Sbjct: 330 EVNRQYAVGSSVRRTQYQQGQVEKLSVSVLLNSQAAPDGVAWSEADKSQISTMIMD---- 385

Query: 392 VSAATGINSRRGDTITITSMDF 413
              A GI++ RGD++++ S +F
Sbjct: 386 ---AVGISNARGDSLSLMSFNF 404


>gi|212637769|ref|YP_002314294.1| flagellar MS-ring protein [Shewanella piezotolerans WP3]
 gi|212559253|gb|ACJ31707.1| Flagellar FliF M-ring protein [Shewanella piezotolerans WP3]
          Length = 572

 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 103/397 (25%), Positives = 186/397 (46%), Gaps = 29/397 (7%)

Query: 24  ILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSI 83
           I+A+ ++V +ML+ A++       Y  LY   E  D  +I   L    I +R+  +   +
Sbjct: 47  IVAACVIV-LMLWSASQ------GYRPLYGNQENVDTAQIIEVLESEGISYRLDASSGLV 99

Query: 84  SVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTI 143
            V    +G+AR+ LAA+G+  +   SG +  D  +  G + FM++     +LEGE++RTI
Sbjct: 100 LVVEDKLGRARMLLAARGV-KAKVPSGMDSLDS-SGIGTSQFMEQAKYRYSLEGELSRTI 157

Query: 144 QSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVP 200
            ++  + +ARVH+ +P    F R+    P+ASVM+   + S  +    E+I +LVA +V 
Sbjct: 158 MALKAVRSARVHLAIPKKTLFIRQQPELPSASVMLDLYSGSNIQPENIESIVNLVAGSVT 217

Query: 201 NLDMGDVTVLDSTGKLL----TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVD 256
            +    V V+D  G  L    +AN+       + L   Q ++  +    +  L   LG D
Sbjct: 218 GMTPERVQVVDQNGNHLSSAISANKDITQARDRQLKYTQELEQSLIGRASSMLQPILGQD 277

Query: 257 NFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVS 316
           NF+  V A++N +  +  +   DP S V      +++ Q S  +  + A+ +   + +  
Sbjct: 278 NFQVQVSAKVNFNQVEETKESLDPVSVV------TQENQSSNETNADMALGIPGALSNQP 331

Query: 317 DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA 376
               P   +      ++E   +++      T     +LE LS++V++N     E  G S 
Sbjct: 332 PAATPEENNNRRNINQKESRQFDVGRSVRHTRFQQMQLENLSVSVLLNSQAAGET-GWSQ 390

Query: 377 DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
            Q      L +++ +V  A G +  RGD  +I S +F
Sbjct: 391 PQ------LQQLSSMVQDAIGFSQARGDQFSINSFEF 421


>gi|269960163|ref|ZP_06174539.1| flagellar M-ring protein [Vibrio harveyi 1DA3]
 gi|269835134|gb|EEZ89217.1| flagellar M-ring protein [Vibrio harveyi 1DA3]
          Length = 583

 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 99/389 (25%), Positives = 182/389 (46%), Gaps = 39/389 (10%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           + +S  +  LY + E  D+  I   L    I +R+ +    + VP   V + R+ LA++G
Sbjct: 65  WSSSQSFRPLYSQQERFDIGEIVSVLETEGISYRMQEQNGQVLVPEGEVARIRMLLASKG 124

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           +  +   +G +   + +S G + FM+       LEGE+ RTI S++ +  ARVH+ +P  
Sbjct: 125 V-KAKLPTGLDSLKEDSSLGTSQFMETARYRHGLEGELVRTIMSLNAVANARVHLAIPRQ 183

Query: 162 GSF-RKIGARPTASVMIRAINPS---VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
             F R+    P+ASVM+  + P      +  EAI +LV  +V  +    V+V+D  G+LL
Sbjct: 184 TLFVRQNTENPSASVMLE-LKPGEDLKPEQVEAIINLVVGSVTAMKPEFVSVIDQYGRLL 242

Query: 218 TANEMER---NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           +A+        +  K L   ++++ +I       L   +G  NFR  V A++N       
Sbjct: 243 SADVASAEAGKVNAKYLEYQKSVEKQIIQRAADMLTPIVGPSNFRVQVAADMNF------ 296

Query: 275 EIVYDPDSKVERSIRLSKDAQ--RSE-TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDK 331
                  S+VE +  +  +A   R+E T Q  S   +   +P     + P+       D 
Sbjct: 297 -------SQVEETQEILDNAPVVRNEHTIQNNSVDQIALGIPGSLSNQPPVTGETPTNDS 349

Query: 332 KEEQSNYEINTKSIA------TTHDNYKLERLSIAVVVNKGRLTEVLGRS-ADQGKIDSY 384
           +   +  EIN +         T +   ++E+LS++V++N     + +  S AD+ +I + 
Sbjct: 350 QNTNARSEINRQYAVGSSVRRTQYQQGQIEKLSVSVLLNSQAAPDGVAWSEADKTQISTM 409

Query: 385 LAEINKIVSAATGINSRRGDTITITSMDF 413
           + +       A GI++ RGD++++ S +F
Sbjct: 410 IMD-------AVGISNTRGDSLSLMSFNF 431


>gi|254973912|ref|ZP_05270384.1| flagellar MS-ring protein [Clostridium difficile QCD-66c26]
 gi|255091298|ref|ZP_05320776.1| flagellar MS-ring protein [Clostridium difficile CIP 107932]
 gi|255312956|ref|ZP_05354539.1| flagellar MS-ring protein [Clostridium difficile QCD-76w55]
 gi|255515715|ref|ZP_05383391.1| flagellar MS-ring protein [Clostridium difficile QCD-97b34]
 gi|255648809|ref|ZP_05395711.1| flagellar MS-ring protein [Clostridium difficile QCD-37x79]
 gi|260682028|ref|YP_003213313.1| flagellar MS-ring protein [Clostridium difficile CD196]
 gi|260685626|ref|YP_003216759.1| flagellar MS-ring protein [Clostridium difficile R20291]
 gi|306518924|ref|ZP_07405271.1| flagellar MS-ring protein [Clostridium difficile QCD-32g58]
 gi|260208191|emb|CBA60528.1| flagellar M-ring protein [Clostridium difficile CD196]
 gi|260211642|emb|CBE01895.1| flagellar M-ring protein [Clostridium difficile R20291]
          Length = 516

 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 111/414 (26%), Positives = 185/414 (44%), Gaps = 53/414 (12%)

Query: 20  TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN 79
           T+I +   VI + + L   A    +   Y  L+ +L+V D   IS  L    ID ++   
Sbjct: 27  TKIALGIGVIAICLALVFTA-ISASKNKYAVLFSELDVQDAADISAELESKKIDTKV--K 83

Query: 80  GSSISVPSSMVGKARIHLAAQGLPSSSSNS-GYELFDKVNSFGLTSFMQEITRVRALEGE 138
           GS+I VP + V K R+ LA    PS +  S G+ L D  +S GLT    +I + R ++GE
Sbjct: 84  GSTIYVPRTEVDKLRLELA----PSLTGGSKGFALMDDSSSIGLTDEEFQIKKQRMIQGE 139

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRH---LV 195
           I +TI+S   +   RVHI   +   F K  A P ++ +   + P        I+    L+
Sbjct: 140 IEKTIKSFPQVEDTRVHITFGESSVFEK-EAIPGSAAVYLMLKPGTTLEKNQIKSVMALI 198

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERNI-------------LGKSLSIVQAIQHEIE 242
           + +V N+   +V V+D+   LL+   +E                + K+ +  QA+  ++E
Sbjct: 199 SGSVTNIPEKNVQVIDNKMNLLSEGILEDEDVDENNQPTNSLINVDKNKASEQALNKQLE 258

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS-- 300
            +I + L    G    ++ V A+L+ DT +  EI  DPD    +  R SK++ +S T+  
Sbjct: 259 KSILEMLEPIFGKGKVKATVNADLSFDTAEKTEIKIDPDKVAIKETR-SKNSSKSATNNV 317

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           Q   A    Q   + ++ +  L  S E                        Y+  ++   
Sbjct: 318 QGVDANMNNQGNNNGTNTEDSLDESFE------------------------YETGKIETH 353

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYL-AEINKIVSAATGINSRRGDTITITSMDF 413
            +V  G L  +    A  GKI   + A++  IV+ A G++  RGDT+++ SM F
Sbjct: 354 TIVAPGELNRLTASVAIDGKIAKGVQADVEDIVNNAIGMDGARGDTLSVVSMVF 407


>gi|255305272|ref|ZP_05349444.1| flagellar MS-ring protein [Clostridium difficile ATCC 43255]
          Length = 516

 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 112/414 (27%), Positives = 186/414 (44%), Gaps = 53/414 (12%)

Query: 20  TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN 79
           T+I +   V+ + + L   A    +   Y  L+ +L+V D   IS  L    ID ++   
Sbjct: 27  TKIALGIGVVAICLALVFTA-ISASKNKYAVLFSELDVQDAADISAELESKKIDTKV--K 83

Query: 80  GSSISVPSSMVGKARIHLAAQGLPSSSSNS-GYELFDKVNSFGLTSFMQEITRVRALEGE 138
           GS+I VP + V K R+ LA    PS +  S G+ L D  +S GLT    +I + R ++GE
Sbjct: 84  GSTIYVPRTEVDKLRLELA----PSLTGGSKGFALMDDSSSIGLTDEEFQIKKQRMIQGE 139

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRH---LV 195
           I +TI+S   +   RVHI   +   F K  A P ++ +   + P        I+    L+
Sbjct: 140 IEKTIKSFPQVEDTRVHITFGESSVFEK-EAVPGSAAVYLMLKPGTTLEKNQIKSVMALI 198

Query: 196 AAAVPNLDMGDVTVLDSTGKLLT--------ANEMERNILG-----KSLSIVQAIQHEIE 242
           + +V N+   +V V+D+   LL+         +E  + I G     K+ +  QA+  ++E
Sbjct: 199 SGSVTNIPEKNVQVIDNKMNLLSEGILEDEDVDENNQPINGGISVDKNKASEQALNKQLE 258

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS-- 300
            +I + L    G    ++ V A+L+ DT +  EI  DPD    +  R SK++ +S T+  
Sbjct: 259 KSILEMLEPIFGKGKVKATVNADLSFDTAEKTEIKIDPDKVAIKETR-SKNSSKSATNNV 317

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           Q   A    Q   + ++ +  L  S E                        Y+  ++   
Sbjct: 318 QGVDANMNNQGNNNGTNTEDSLDESFE------------------------YETGKIETH 353

Query: 361 VVVNKGRLTEVLGRSADQGKI-DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
            +V  G L  +    A  GKI     A++  IV+ A G++  RGDT+++ SM F
Sbjct: 354 TIVAPGELNRLTASVAIDGKIAKGVQADVEDIVNNAIGMDGARGDTLSVVSMVF 407


>gi|91223211|ref|ZP_01258477.1| flagellar M-ring protein [Vibrio alginolyticus 12G01]
 gi|91192024|gb|EAS78287.1| flagellar M-ring protein [Vibrio alginolyticus 12G01]
          Length = 570

 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 98/388 (25%), Positives = 183/388 (47%), Gaps = 35/388 (9%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           + +S  +  LY + E  D+  I   L    + +R+ +    + VP   V K R+ LA++G
Sbjct: 52  WSSSQSFRPLYSQQERFDIGEIVSVLESEGVSYRMQEQNGQVLVPEGEVAKVRMLLASKG 111

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           +  +   +G +   + +S G + FM+       LEGE+ RTI S++ +  ARVH+ +P  
Sbjct: 112 V-KAKLPTGLDSLKEDSSLGTSQFMETARYRHGLEGELVRTIMSLNSVANARVHLAIPRQ 170

Query: 162 GSF-RKIGARPTASVMIRAINPS---VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
             F R+    P+ASVM+  + P      +  EAI +LV  +V  +    V+V+D  G+LL
Sbjct: 171 TLFVRQNSENPSASVMLE-LKPGEDLKPEQVEAIINLVVGSVTAMKPEFVSVIDQYGRLL 229

Query: 218 TAN---EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM-DTQQI 273
           +A+        +  K L   ++++ +I       L   +G  NFR  V A+L+    ++ 
Sbjct: 230 SADVASAEAGKVNAKYLEYQKSVEKQIIQRAADMLTPIVGPSNFRVQVAADLDFSQVEET 289

Query: 274 REIVYD-PDSKVERSI------RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSL 326
           +EI+ + P  + E +I      +++     S ++QP          P     +V    S 
Sbjct: 290 QEILDNAPVVRNEHTIHNNSVDQIALGVPGSLSNQP----------PVTGSGEVETSDSQ 339

Query: 327 ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN-KGRLTEVLGRSADQGKIDSYL 385
               + E    Y + +    T +   ++E+LS++V++N K     V    AD+       
Sbjct: 340 NTNARSEVNRQYAVGSSVRRTQYQQGQIEKLSVSVLLNSKASPDGVAWSEADK------- 392

Query: 386 AEINKIVSAATGINSRRGDTITITSMDF 413
            +I+ ++  A GI++ RGD++++ S +F
Sbjct: 393 EQISNMIMDAVGISATRGDSLSLMSFNF 420


>gi|156976202|ref|YP_001447108.1| flagellar MS-ring protein [Vibrio harveyi ATCC BAA-1116]
 gi|156527796|gb|ABU72881.1| hypothetical protein VIBHAR_04973 [Vibrio harveyi ATCC BAA-1116]
          Length = 583

 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 98/382 (25%), Positives = 184/382 (48%), Gaps = 25/382 (6%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           + +S  +  LY + E  D+  I   L    I +R+ +    + VP   V + R+ LA++G
Sbjct: 65  WSSSQSFRPLYSQQERFDIGEIVSVLESEGISYRMQEQNGQVLVPEGEVARIRMLLASKG 124

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           +  +   +G +   + +S G + FM+       LEGE+ RTI S++ +  ARVH+ +P  
Sbjct: 125 V-KAKLPTGLDSLKEDSSLGTSQFMETARYRHGLEGELVRTIMSLNAVANARVHLAIPRQ 183

Query: 162 GSF-RKIGARPTASVMIRAINPS---VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
             F R+    P+ASVM+  + P      +  EAI +LV  +V  +    V+V+D  G+LL
Sbjct: 184 TLFVRQNTENPSASVMLE-LKPGEDLKPEQVEAIINLVVGSVTAMKPEFVSVIDQYGRLL 242

Query: 218 TANEMER---NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM-DTQQI 273
           +A+        +  K L   ++++ +I       L   +G  NFR  V A++N    ++ 
Sbjct: 243 SADVASAEAGKVNAKYLEYQKSVEKQIIQRAADMLTPIVGPSNFRVQVAADMNFSQVEET 302

Query: 274 REIVYD-PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332
           +EI+ + P  + E +I+ +    +     P S      N P V+  + P   S     + 
Sbjct: 303 QEILDNAPVVRNEHTIQ-NNSVDQIALGIPGSL----SNQPPVTG-ETPTNDSQNTNARS 356

Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS-ADQGKIDSYLAEINKI 391
           E    Y + +    T +   ++E+LS++V++N     + +  S AD+ +I + + +    
Sbjct: 357 EVNRQYAVGSSVRRTQYQQGQVEKLSVSVLLNSQAAPDGVAWSEADKSQISTMIMD---- 412

Query: 392 VSAATGINSRRGDTITITSMDF 413
              A GI++ RGD++++ S +F
Sbjct: 413 ---AVGISNARGDSLSLMSFNF 431


>gi|323493122|ref|ZP_08098253.1| flagellar MS-ring protein [Vibrio brasiliensis LMG 20546]
 gi|323312593|gb|EGA65726.1| flagellar MS-ring protein [Vibrio brasiliensis LMG 20546]
          Length = 582

 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 97/374 (25%), Positives = 177/374 (47%), Gaps = 27/374 (7%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110
           LY + E  D   I   L    I++R+ +    + V    V + R+ LAA+G+  +   +G
Sbjct: 73  LYSQQERFDTGEIVSVLESEGINYRLQEKNGQVLVAEGEVARIRMLLAAKGV-KAKLPTG 131

Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGA 169
            +   + +S G + FM+       LEGE+ RTI S++ +  ARVH+ +P    F R+   
Sbjct: 132 LDSLQEDSSLGTSQFMETARYRHGLEGELVRTIISLNAVSNARVHLAIPRQTLFVRQNSE 191

Query: 170 RPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMER 224
            P+ASVM+        K    EAI +L+  +V  +    V+V+D  G+LL+A+       
Sbjct: 192 APSASVMLELKPGEELKPPQVEAIINLLVGSVTGMKPEQVSVIDQYGRLLSADVASAEAG 251

Query: 225 NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM-DTQQIREIVYD-PDS 282
            +  K L   ++++ +I       L   +G  NFR  V A++N    ++ +EI+ + P  
Sbjct: 252 KVNAKYLDYQKSVEKQIIQRAADMLTPIVGPSNFRVQVAADMNFSQVEETQEILDNTPIV 311

Query: 283 KVERSIRLSKDAQRSETSQPESAVTVE---QNMPHVSDRKVPLPRSLENTDKKEEQSNYE 339
           + E +I        +  S  + A+ V     N P V+  +VP   S     + E    Y 
Sbjct: 312 RNEHTI--------TNNSIDQIALGVPGTLSNQPPVTG-EVPTQDSQNTNARSEINRQYA 362

Query: 340 INTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN 399
           + +    T +   ++E+LS++V++N+         + D+       ++I+ +++ A GI 
Sbjct: 363 VGSSVRRTQYQQGQIEKLSVSVLLNEAAAPNGTAWTEDEK------SQISTMITDAVGIA 416

Query: 400 SRRGDTITITSMDF 413
            +RGD+ +I S +F
Sbjct: 417 DQRGDSFSIMSFNF 430


>gi|148554208|ref|YP_001261790.1| flagellar M-ring protein FliF [Sphingomonas wittichii RW1]
 gi|148499398|gb|ABQ67652.1| flagellar M-ring protein FliF [Sphingomonas wittichii RW1]
          Length = 578

 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 110/393 (27%), Positives = 190/393 (48%), Gaps = 43/393 (10%)

Query: 44  NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP 103
            +P  D L+  +  +D   ++ AL  ANI ++I     +++VP +   +A++ LA QGLP
Sbjct: 66  GAPQRD-LFAGMGDADKAAVAEALKTANIPYQIDRGTGALTVPETSFYQAKMLLAQQGLP 124

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
            S+ + G  L   +   G +  ++      A E ++ARTI++I  + +A+VH+       
Sbjct: 125 KSAPD-GDALISSL-PLGASRAVEGEKLRTAREMDLARTIEAIDAVESAKVHVAAEQPSV 182

Query: 164 FRKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE 221
           F +  A+P ASVM  +RA         +AI HLVA++VPNL    V+++D  G+LL+A+ 
Sbjct: 183 FLRDEAKPQASVMLRLRAGRALADSQVQAIVHLVASSVPNLTPDGVSIVDQAGRLLSASG 242

Query: 222 MERNILGKSLSIVQAIQHEIEMN----INKALAAFLGVDNFRSAVVAELNM-DTQQIREI 276
              + + ++ +    IQ++IE      + K L   +G  NF + V A+++  +TQ  RE 
Sbjct: 243 G--DPMSQASTRQVDIQNKIEQRYLDALTKILTPIVGPGNFTAEVHADVDFTETQATRE- 299

Query: 277 VYDPDSKVERSIRLS-----KDAQRSE-----TSQPESAVTVEQNMPHVSDRKVPLPRS- 325
            Y  D+ V R  + S     KD + +      ++QP +A  V        ++ V  P + 
Sbjct: 300 SYPKDTAVVRQEQGSWTGDKKDGEATGIPGALSNQPPAASQVA----AAPNQTVAAPTAG 355

Query: 326 ---LENTDKKEEQSN--YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380
                N  K  E  N  YE+  +   T      ++RLS+AV + +G  +    R      
Sbjct: 356 TTDAANAGKTSENYNRTYELGREVSVTRAPIGTVKRLSVAVALREG--SRKFSR------ 407

Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
             + LA I  +V  A G +  RGD + +++  F
Sbjct: 408 --AELASIETLVRGAIGADQARGDVVALSARSF 438


>gi|255321871|ref|ZP_05363021.1| flagellar M-ring protein FliF [Campylobacter showae RM3277]
 gi|255300975|gb|EET80242.1| flagellar M-ring protein FliF [Campylobacter showae RM3277]
          Length = 564

 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 120/440 (27%), Positives = 199/440 (45%), Gaps = 54/440 (12%)

Query: 44  NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP 103
           N   Y  L+     +D   I   L +  + ++I + G+ I VP+S V + RI +A+ G+ 
Sbjct: 48  NYDGYSVLFENTSAADSALIIQQLEKDKVKYKILNEGT-ILVPNSDVYRERISIASLGI- 105

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
                 G+E+FDK   FG T   Q++   RALEGE+ARTI+S++ I  A V I +P    
Sbjct: 106 LKDGKVGFEIFDK-QEFGATDAEQKVKFQRALEGELARTIESLAPINKAIVRIAIPKETI 164

Query: 164 FRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
           F +    P+AS+++     +++N    K    I++LVAAAV NL    V ++   G  L 
Sbjct: 165 FTERATPPSASIVLNLKDGQSLN---LKQITGIKNLVAAAVANLKPEQVKIVSQDGVPLG 221

Query: 219 ANEMERNILGKSLSIVQAI------QHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQ 271
             + E +    S  I Q I      +H +E  I   L+  + G D   + V  + +   +
Sbjct: 222 EEDGEYD----SDQITQQIRYKRDAEHNLEEKIINVLSPIVGGSDKVVAKVTIDFDFARK 277

Query: 272 QIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDK 331
             +   +DP+S       +++  Q  E  +  S     Q +P       P+   L++   
Sbjct: 278 DSQSETFDPNS-------VARSEQNVEEKRQGSKEAEVQGVPGAVSNIGPV-EGLQDGKM 329

Query: 332 KE------EQSNYEINTKSIATTHDNY-KLERLSIAVVVN---------KGRLT-EVLGR 374
           KE        +NYEI +K +    D + K+ RLS AVVV+         KG  T E+   
Sbjct: 330 KELYSKSSSTTNYEI-SKKVERVKDQFAKINRLSAAVVVDGKYENKKDEKGNPTSEIAYV 388

Query: 375 SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSR 434
             D+ +    LA I+ ++  + G +  RGD +T+++ +F         +   SF ++   
Sbjct: 389 PLDKEQ----LARIDALIRQSIGFDQNRGDEVTVSNFEFQRQDGQTPASKVQSFFELYVV 444

Query: 435 HFATVINALVFLVGTLLVTF 454
            F  ++  L   V  LL  F
Sbjct: 445 PFLPILKYL--FVAILLYVF 462


>gi|56964034|ref|YP_175765.1| flagellar MS-ring protein [Bacillus clausii KSM-K16]
 gi|56910277|dbj|BAD64804.1| flagellar M-ring protein FliF [Bacillus clausii KSM-K16]
          Length = 527

 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 106/429 (24%), Positives = 197/429 (45%), Gaps = 26/429 (6%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +Q+  F+   ++L ++ ++ +  ++L+ I L  A  F  N   Y  LY +L +++  +I 
Sbjct: 10  NQVQTFWTESSTLRKSAVISVVLLLLLAIALAAALLFRTN---YAPLYSQLTLAEAGQIQ 66

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
            AL +  +  R+S++G++I VP + V + ++ LAA+GLP S S   Y  F     FG+T 
Sbjct: 67  EALEQRGVAARVSNDGTTIHVPEADVDRLKVDLAAEGLPKSGSID-YAFFQNQMGFGMTD 125

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
               +     ++ E+A  I+ + G+  A V I +P+   +   G   + + ++  + P  
Sbjct: 126 NEFTVIERSLMQTELAELIRGVQGVEQANVIITLPEESVWLNSGQESSTAAVVLQLEPGY 185

Query: 185 Y---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS---IVQAIQ 238
                  +A+ HL++ +VPNL + ++ + DS     T  E E +      S   I Q I+
Sbjct: 186 TLDSSQVKALYHLISKSVPNLPIENIVLSDSQFNNYTYQEEETSPAASFQSQREIKQEIE 245

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVER-----SIRLSKD 293
            +++  IN+ L+A +G +N   +V A+++   +Q  E + +P  + E      S+    +
Sbjct: 246 SDLKQTINQLLSAVVGPENAIVSVTADIDFTQEQRTEDLVEPVDEEEVSGLAISVERINE 305

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
                T   E    V   +P+ +          E T   EE+ NYE+N          Y+
Sbjct: 306 MYEGTTGNEEGVAGVGDEIPNYTGAAGGGDSESERT---EERINYEVNRIHKEIIESPYE 362

Query: 354 LERLSIAVVVNKGRLTEVL--GRSADQGKIDSYLAEINKIVSAATGINSRR---GDTITI 408
           +  L I V+VN     + L   ++AD   I + L  I +      G        GD + +
Sbjct: 363 IRDLGIQVMVNPPEGMQALPPQQTAD---ITAMLETIIRTTLPDDGEEEGEQDVGDRVVV 419

Query: 409 TSMDFLENQ 417
           TSM F + +
Sbjct: 420 TSMPFAQTE 428


>gi|269965409|ref|ZP_06179529.1| flagellar M-ring protein [Vibrio alginolyticus 40B]
 gi|269830055|gb|EEZ84284.1| flagellar M-ring protein [Vibrio alginolyticus 40B]
          Length = 583

 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 99/383 (25%), Positives = 183/383 (47%), Gaps = 25/383 (6%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           + +S  +  LY + E  D+  I   L    + +R+ +    + VP   V K R+ LA++G
Sbjct: 65  WSSSQSFRPLYSQQERFDIGEIVSVLESEGVSYRMQEQNGQVLVPEGEVAKVRMLLASKG 124

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           +  +   +G +   + +S G + FM+       LEGE+ RTI S++ +  ARVH+ +P  
Sbjct: 125 V-KAKLPTGLDSLKEDSSLGTSQFMETARYRHGLEGELVRTIMSLNSVANARVHLAIPRQ 183

Query: 162 GSF-RKIGARPTASVMIRAINPS---VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
             F R+    P+ASVM+  + P      +  EAI +LV  +V  +    V+V+D  G+LL
Sbjct: 184 TLFVRQNSENPSASVMLE-LKPGEDLKPEQVEAIINLVVGSVTAMKPEFVSVIDQYGRLL 242

Query: 218 TAN---EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM-DTQQI 273
           +A+        +  K L   ++++ +I       L   +G  NFR  V A+L+    ++ 
Sbjct: 243 SADVASAEAGKVNAKYLEYQKSVEKQIIQRAADMLTPIVGPSNFRVQVAADLDFSQVEET 302

Query: 274 REIVYD-PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332
           +EI+ + P  + E +I  +    +     P S      N P V+          +NT+ +
Sbjct: 303 QEILDNAPVVRNEHTIH-NNSVDQIALGVPGSL----SNQPPVTGSGEVETNDSQNTNAR 357

Query: 333 EE-QSNYEINTKSIATTHDNYKLERLSIAVVVN-KGRLTEVLGRSADQGKIDSYLAEINK 390
            E    Y + +    T +   ++E+LS++V++N K     V    AD+        +I+ 
Sbjct: 358 SEVNRQYAVGSSVRRTQYQQGQIEKLSVSVLLNSKASPDGVAWSEADK-------EQISN 410

Query: 391 IVSAATGINSRRGDTITITSMDF 413
           ++  A GI++ RGD++++ S +F
Sbjct: 411 MIMDAVGISATRGDSLSLMSFNF 433


>gi|296282266|ref|ZP_06860264.1| flagellar M-ring protein FliF [Citromicrobium bathyomarinum JL354]
          Length = 526

 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 103/380 (27%), Positives = 176/380 (46%), Gaps = 37/380 (9%)

Query: 51  LYVKLEVSDVNRISV--ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108
           LY  L+  D +R SV   L +A ID++I++N  ++SV  S + +AR+ +A+ G   ++  
Sbjct: 56  LYSSLD--DASRASVVATLDQAGIDYQINNNTGALSVSESDLYRARMVVASNG-SIAAPE 112

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRAL-EGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
           +G ++ + +   G +  + E  R+RA  E E+  T+Q I G+ + RVHI   +   F + 
Sbjct: 113 TGAQMIENL-PLGASRTL-EGDRLRAAQERELMLTVQEIDGVESVRVHIAKAERSVFVRE 170

Query: 168 GARPTASVMIRAINPS---VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER 224
              P+AS+M+R + P          AI +LVA +VP L    V V+D  GKLLT  +   
Sbjct: 171 NVAPSASIMVR-MAPGRELADSQVSAIVNLVAGSVPGLSPDAVRVVDQHGKLLT--DKRE 227

Query: 225 NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV 284
               + L +   ++ ++   +++ L+  +G D F S V  EL+M+        YD D  +
Sbjct: 228 GAGNERLDLQTQMEAKLTAQVDQLLSPMIGADAFSSQVQVELDMNEVTSARESYDKDGAI 287

Query: 285 ERSIRLSKDAQRSETSQ------PESAVTVEQNMPHVSDRK---VPLPRSLENTDKKEEQ 335
            R     +  Q+S TSQ      P +        P ++DR     P     +        
Sbjct: 288 RR-----ETTQQSSTSQAPAAGIPGATANTPPADPQLADRAPQDTPPADGAQTMGDTSAS 342

Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395
             YE+  +   +      L+R+S+AV ++K  +                + +I ++VSAA
Sbjct: 343 RTYELGREVSVSNLTPGALKRVSVAVAIDKNAMANANAAD---------IKKIEELVSAA 393

Query: 396 TGINSRRGDTITITSMDFLE 415
            G    RGD +T+    F E
Sbjct: 394 VGAQDARGDKVTVMIRPFTE 413


>gi|260767966|ref|ZP_05876900.1| flagellar M-ring protein FliF [Vibrio furnissii CIP 102972]
 gi|260615996|gb|EEX41181.1| flagellar M-ring protein FliF [Vibrio furnissii CIP 102972]
          Length = 579

 Score =  103 bits (258), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 108/431 (25%), Positives = 203/431 (47%), Gaps = 30/431 (6%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           + +S  +  LY + E  DV  I   L   +I +R+ +    + VP   V + R+ LAA+G
Sbjct: 61  WSSSQSFRALYGQQEQFDVGDIVSVLEAESISYRLQEQNGQVLVPEGEVARVRMLLAAKG 120

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           +  +   +G +   + +S G + FM+       LEGE+ RTI +++ +  ARVH+ +P  
Sbjct: 121 I-KAKLPTGLDSLQEDSSLGTSQFMETARYRHGLEGELVRTIIALNAVSNARVHLAIPRQ 179

Query: 162 GSF-RKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
             F R+ G  P+ASVM  ++A      +  EAI +LV  +V  +    V+V+D  G+LL+
Sbjct: 180 TLFVRQNGEAPSASVMLELKAGEDLKPEQVEAIINLVVGSVTGMKPEFVSVIDQYGRLLS 239

Query: 219 ANEMERN---ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQIR 274
           A+    +   +  K L   + ++ ++       L   +G  NFR  V A+++    ++ +
Sbjct: 240 ADVASGDSGKVNAKYLDYQKNLEKQVIQRAADMLTPIVGPSNFRVQVAADMDFSRVEETQ 299

Query: 275 EIVYD-PDSKVERSIRLSKDAQRSETSQPESAVTVE-QNMPHVSDRKVPLPRSLENTDKK 332
           EI+ + P  + E ++      Q +   Q    +     N P V+  K P   S  +  + 
Sbjct: 300 EILDNTPVVQNEHTV------QNNSIDQIALGIPGSLSNQPPVTGEK-PTQDSQNSNARS 352

Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV 392
           E    Y + +    T +   ++++L+++V++N          S DQ K      EI+ ++
Sbjct: 353 EINRQYAVGSSVRRTQYQQGQVKKLNVSVLLNSAAAPNGTAWS-DQEK-----TEISAML 406

Query: 393 SAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452
             A GI++ RGD++++ S +F   ++    ++   + D       TV   L +++G LL 
Sbjct: 407 MDAVGISAARGDSLSLMSFNFTPIEIEAPPSIPW-WQD------PTVQQPLRYVIGGLLG 459

Query: 453 TFLGLHALRRL 463
             +    LR L
Sbjct: 460 MAMIFFVLRPL 470


>gi|283955743|ref|ZP_06373234.1| flagellar M-ring protein [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792698|gb|EFC31476.1| flagellar M-ring protein [Campylobacter jejuni subsp. jejuni 1336]
          Length = 560

 Score =  103 bits (258), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 176/369 (47%), Gaps = 33/369 (8%)

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L + NI +++ ++ + I VP   V + R+ +A++GL    S  G+E FD   +FG 
Sbjct: 68  IVAKLEQNNIPYKL-ESENKILVPQDQVYRQRMFIASEGL-IKDSRVGFEAFD-TQAFGA 124

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAI 180
           T+  Q++   RA+EGE+ARTI+++  I +A VHI  P    F +    PTASV+  +R  
Sbjct: 125 TNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASVVVNVREG 184

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQH 239
                K  + I+++V+AAVP L   +V + D +G  L   E  E +++   +      + 
Sbjct: 185 LKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIKFKSDQEK 244

Query: 240 EIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
            +E  I + LA F  G+D  + +V  + +   Q+ +  +YDP+  V     L++  +R+ 
Sbjct: 245 ALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLNE--ERTG 302

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEIN--------TKSIATTHD 350
              PE      Q +P       P    +E  D K +   Y+ N        +K+I  T  
Sbjct: 303 RKDPEI-----QGVPGAVSNIGP----VEGLDNKGQIDTYKKNQVTTNNELSKTITNTKK 353

Query: 351 NY-KLERLSIAVVVNKGRLTEVLGRSADQGK-----IDSYLAEINKIVSAATGINSRRGD 404
            +  + R S AV ++ G+  +V+  + D            LA +  IV      ++ RGD
Sbjct: 354 QFATVLRTSAAVTID-GKYQDVVDENGDVKSEYVPLTKEELASVESIVKNTINFSATRGD 412

Query: 405 TITITSMDF 413
           ++ + ++ F
Sbjct: 413 SVVVQNLPF 421


>gi|86151498|ref|ZP_01069713.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|85841845|gb|EAQ59092.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni
           260.94]
          Length = 560

 Score =  103 bits (258), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 176/369 (47%), Gaps = 33/369 (8%)

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L + NI +++ ++ + I VP   V + R+ +A++GL    S  G+E FD   +FG 
Sbjct: 68  IVAKLEQNNIPYKL-ESENKILVPQDQVYRQRMFIASEGL-IKDSRVGFEAFD-TQAFGA 124

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAI 180
           T+  Q++   RA+EGE+ARTI+++  I +A VHI  P    F +    PTASV+  +R  
Sbjct: 125 TNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASVVVNVREG 184

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQH 239
                K  + I+++V+AAVP L   +V + D +G  L   E  E +++   +      + 
Sbjct: 185 LKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIKFKSDQEK 244

Query: 240 EIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
            +E  I + LA F  G+D  + +V  + +   Q+ +  +YDP+  V     L++  +R+ 
Sbjct: 245 ALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLNE--ERTG 302

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEIN--------TKSIATTHD 350
              PE      Q +P       P    +E  D K +   Y+ N        +K+I  T  
Sbjct: 303 RKDPEI-----QGVPGAVSNIGP----VEGLDNKGQIDTYKKNQVTTNNELSKTITNTKK 353

Query: 351 NY-KLERLSIAVVVNKGRLTEVLGRSADQGK-----IDSYLAEINKIVSAATGINSRRGD 404
            +  + R S AV ++ G+  +V+  + D            LA +  IV      ++ RGD
Sbjct: 354 QFATVLRTSAAVTID-GKYQDVVDENGDVKSEYVPLTKEELASVESIVKNTINFSATRGD 412

Query: 405 TITITSMDF 413
           ++ + ++ F
Sbjct: 413 SVVVQNLPF 421


>gi|311030130|ref|ZP_07708220.1| flagellar MS-ring protein [Bacillus sp. m3-13]
          Length = 529

 Score =  103 bits (258), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 98/379 (25%), Positives = 178/379 (46%), Gaps = 30/379 (7%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           I  +   F+ S T   +T +L   S ++V I    A  +F+N      LY  L V +  +
Sbjct: 8   IKTKTFSFWTSRTKAQKTAML---STVIVSIFAIAAMVYFLNKTDMAPLYKDLTVQETGQ 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L    I  +I++NG++I VP   V   ++ LAA+GLP S S   Y  F + + FG+
Sbjct: 65  IKEVLDGRGIQSQITNNGTAILVPQQSVDSLKVELAAEGLPKSGS-IDYGFFGERSGFGM 123

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAIN 181
           T     I ++ A++ E+A  ++SI G+  A+V + +P+ G F R+     +AS++I   N
Sbjct: 124 TDNEFRIMKLDAMQTELANLVKSIEGVKEAQVMLSLPEEGVFVRESTQEASASIVIE--N 181

Query: 182 PSVYK----SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL--LTANEMERNILGKS--LSI 233
              Y+       A+ HLV+ ++PNL   ++ +++   +   L  N+   N    S  L +
Sbjct: 182 DPGYQFDQNHVNALYHLVSKSIPNLATDNIVIMNQNFEYFDLNNNQSSGNTFNASTQLEL 241

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE----IVYDPDSKVERSIR 289
            + I+ +I+  + + L   +G +    +V  +++  TQ+ RE       DP++    ++ 
Sbjct: 242 KKEIERDIQRQVQQMLGMMMGYNKVVVSVTTDIDF-TQEAREENRVTPVDPENMEGIAVS 300

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPL-----PRSLENTDKKEEQSNYEINTKS 344
           + +  + S T   ++A  V    P   +  +P           + +K EE+ N E+N   
Sbjct: 301 VERITE-SYTGSEDTAGGV----PGTGEADIPAYVAGGGSGSGDYEKMEERINNEVNRIR 355

Query: 345 IATTHDNYKLERLSIAVVV 363
                  YK+  L I V+V
Sbjct: 356 SEIVESPYKVRDLGIQVMV 374


>gi|167623379|ref|YP_001673673.1| flagellar MS-ring protein [Shewanella halifaxensis HAW-EB4]
 gi|167353401|gb|ABZ76014.1| flagellar M-ring protein FliF [Shewanella halifaxensis HAW-EB4]
          Length = 566

 Score =  103 bits (258), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 107/452 (23%), Positives = 209/452 (46%), Gaps = 27/452 (5%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  L  ++  +++ ++   L    + + I   G  + VP       R+ L+ +
Sbjct: 57  IWAQEPEYRPLG-QMSTAEMVQVLDVLDNNQVKYEIQ--GDVVKVPEDKFQDVRMLLSRE 113

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GL ++ +N+ +   +K + FG++  M++     + E  +AR I+ +  +  A+V + +P 
Sbjct: 114 GLDNTDANNDF--LNKDSGFGVSQRMEQARLKHSQEQNLARIIEELKSVTRAKVILALPK 171

Query: 161 MGSFRKIGARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
              F +  ++P+A+V++      +  +  ++I  +VA+AV NL+   VTV D+ G+LL +
Sbjct: 172 ENVFARNRSKPSATVVVSTRRSGLSQEEVDSIVDIVASAVHNLEPNKVTVTDANGRLLNS 231

Query: 220 NEMERN--ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
              + +  I  + L IVQ  + E    +   L   LG +NF S V  +++MD   + +  
Sbjct: 232 GTQDGSSAIARRELEIVQQKESEYRNKVESILMPILGPENFTSQV--DVSMDFTAVEQTA 289

Query: 278 --YDPDSKVERSIRLSKDAQRSETS---------QPESAVTVEQNMPHVSDRKVPLPRSL 326
             Y+PD    RS  + ++     TS         QP  A     ++P   + +  + R+ 
Sbjct: 290 KRYNPDLPSLRSEMVVENNSNGGTSGGIPGALSNQPPMA----SDIPQEVNAEETVTRNS 345

Query: 327 ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN-KGRLTEVLGRSADQGKIDSYL 385
            +T  KE   N+E++T    T      L R+S++V V+ K       G      + +  L
Sbjct: 346 GST-HKEATRNFELDTTISHTRQQIGTLRRVSVSVAVDFKNAPMAEDGSVNRVPRTEQEL 404

Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445
           A I +++  A G N++RGD I + ++ F++  +  +   ++       R    V+ ALV 
Sbjct: 405 ANIRRLLEGAVGFNTQRGDVIEVVTVPFMDQLIEAAPAPELWEQPWFWRVLRLVLGALVI 464

Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
           LV  L V    L  L    +++   + + GG+
Sbjct: 465 LVLILAVVRPMLKKLVYPDSVNMPDEPQRGGE 496


>gi|11095419|gb|AAG29859.1|AF313764_2 flagellar M-Ring protein [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 619

 Score =  103 bits (258), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 121/465 (26%), Positives = 206/465 (44%), Gaps = 72/465 (15%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           F +++P   +LY      D   I+ AL    I + I      I+V      KAR  LA Q
Sbjct: 71  FLLSAPTQRDLYPGARDGDRASIARALETGGIHYNIKRGNGVITVSEKEFYKARDLLAQQ 130

Query: 101 GLPSSSSNSGYELFDKVNSFGL-TSFMQEITRVRAL-EGEIARTIQSISGIVAARVHIVM 158
           GLP S+ +  +     ++S  L  S   E  R+RA  E  +ARTI++I  +  ARVHI  
Sbjct: 131 GLPKSAPDGVH----VISSLPLGASRAVEAKRLRAAREVVLARTIETIDVVNQARVHIAE 186

Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           P    F +     TASVM++ +      +A  +AI++LVAA+VP +    V+V+D  G L
Sbjct: 187 PQPSPFVREQVHGTASVMLKLMTGRNLSNAQVQAIQNLVAASVPGMAPEAVSVVDQAGHL 246

Query: 217 LTA-NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM-DTQQIR 274
           L+A +  + +I  + L + Q ++      +NK L   LG +N+ + V  +L+  ++Q  R
Sbjct: 247 LSATSNADNDINDRQLRLQQTVEARYMDALNKLLVPLLGENNYTAEVHTDLDFTESQATR 306

Query: 275 EIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRS--------- 325
           E      S    S   +KD    +      A++   NMP       P P +         
Sbjct: 307 ESYPKEGSLRSESGSWNKDGGPDQNGGIPGAMS---NMP-------PTPANPTQNPPPNL 356

Query: 326 -----------------------LENTDKKEEQSN--------YEINTKSIATTHDN--- 351
                                    N    ++  N         E   ++ A T +N   
Sbjct: 357 QPPAQPNNQQNAQNGQQGQNAQGQPNGQNAQQGQNARAPGSVPAETAQQAQARTSENFNR 416

Query: 352 -YKLERLSIAVVVNK----GRLTEVLG-RSADQGKIDS--YLAEINKIVSAATGINSRRG 403
            Y+L R  ++V+ N      R++  +  R  + GK  S   +A++ K++  A G ++ RG
Sbjct: 417 YYELGR-EVSVIRNPTGSVKRVSVAIALRQINHGKPPSPEQVAQLEKLIKGAIGFDASRG 475

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
           D + I+S DF+   +F+    Q S++ +L+R+ + ++ A + + G
Sbjct: 476 DVVAISSSDFMGGSVFSMPWYQNSWVPLLARNLSALLVAALVIFG 520


>gi|57237369|ref|YP_178382.1| flagellar MS-ring protein [Campylobacter jejuni RM1221]
 gi|86153720|ref|ZP_01071923.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|57166173|gb|AAW34952.1| flagellar M-ring protein FliF [Campylobacter jejuni RM1221]
 gi|85842681|gb|EAQ59893.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|315057739|gb|ADT72068.1| Flagellar M-ring protein fliF [Campylobacter jejuni subsp. jejuni
           S3]
          Length = 560

 Score =  103 bits (258), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 176/369 (47%), Gaps = 33/369 (8%)

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L + NI +++ ++ + I VP   V + R+ +A++GL    S  G+E FD   +FG 
Sbjct: 68  IVAKLEQNNIPYKL-ESENKILVPQDQVYRQRMFIASEGL-IKDSRVGFEAFD-TQAFGA 124

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAI 180
           T+  Q++   RA+EGE+ARTI+++  I +A VHI  P    F +    PTASV+  +R  
Sbjct: 125 TNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASVVVNVREG 184

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQH 239
                K  + I+++V+AAVP L   +V + D +G  L   E  E +++   +      + 
Sbjct: 185 LKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIKFKSDQEK 244

Query: 240 EIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
            +E  I + LA F  G+D  + +V  + +   Q+ +  +YDP+  V     L++  +R+ 
Sbjct: 245 ALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLNE--ERTG 302

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEIN--------TKSIATTHD 350
              PE      Q +P       P    +E  D K +   Y+ N        +K+I  T  
Sbjct: 303 RKDPEI-----QGVPGAVSNIGP----VEGLDNKGQIDTYKKNQVTTNNELSKTITNTKK 353

Query: 351 NY-KLERLSIAVVVNKGRLTEVLGRSADQGK-----IDSYLAEINKIVSAATGINSRRGD 404
            +  + R S AV ++ G+  +V+  + D            LA +  IV      ++ RGD
Sbjct: 354 QFATVLRTSAAVTID-GKYQDVVDENGDVKSEYVPLTKEELASVESIVKNTINFSATRGD 412

Query: 405 TITITSMDF 413
           ++ + ++ F
Sbjct: 413 SVVVQNLPF 421


>gi|168698710|ref|ZP_02730987.1| Flagellar FliF M-ring protein [Gemmata obscuriglobus UQM 2246]
          Length = 523

 Score =  103 bits (258), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 92/297 (30%), Positives = 151/297 (50%), Gaps = 22/297 (7%)

Query: 1   MAILDQLLQ---FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYV-KLE 56
           M + ++LL+    + +G S GR RI ++ S + V ++   A  +      Y  L    L 
Sbjct: 1   MDVFNRLLEQARAYWAGLSAGR-RIGVVLSFLGV-LLALGAVVYLSPGGRYTPLGAGPLP 58

Query: 57  VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
             DV+ +   LS   I FR+S  G+ I VP     +A + LA  G+P+     G+E+FD+
Sbjct: 59  PEDVSAMRTRLSGDGIPFRLSSGGTGIEVPDERYAEAVVSLAGAGIPARGGK-GFEVFDE 117

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
             S   T F+Q +   RAL+ E+AR+I  +  + +ARV I  P+   F +    PTASV+
Sbjct: 118 -TSLMTTPFVQSVNYQRALQAELARSIMQMESVQSARVMIAKPEPSPFVRDQKNPTASVV 176

Query: 177 IR-----AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILG-K 229
           I+      +NP+   +A AI  LVA ++  L   +VTV+++ G+LL+  N   R+ L   
Sbjct: 177 IKLKPRMTMNPA---TAGAIVSLVAHSIEGLRPENVTVMETGGRLLSDPNAAARSGLPTP 233

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV--YDPDSKV 284
            L  ++ ++  +     + L+  LG       V A++N   Q+I+E V  Y PD +V
Sbjct: 234 QLEYIERLETYLSTKAEEMLSKTLGPGRAVIRVSADVNF--QKIKERVKTYSPDGRV 288


>gi|322382303|ref|ZP_08056210.1| flagellar MS-ring protein-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321153656|gb|EFX46031.1| flagellar MS-ring protein-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 527

 Score =  103 bits (257), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 93/401 (23%), Positives = 193/401 (48%), Gaps = 21/401 (5%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           +T+I ++A+ + + I+      + ++   Y   +  L+ +    I   L +  I +++S 
Sbjct: 22  KTKITLIAAAVFM-ILTVGIISYNLSKTEYSTAFTNLQPNAAADIKAYLDQEKIPYKLSA 80

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           +G SI VP++ V + +I + ++GL +   N GY +FD+  SFG T    E+ ++ A++GE
Sbjct: 81  DGKSIGVPTAQVAEVKIAVESKGL-NKGGNVGYGIFDQSGSFGTTDNQFEMQKLNAMQGE 139

Query: 139 IARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINPSVYKSAE--AIRHLV 195
           + + I S   I  ++V I +P+ G F  K   + +ASV++           +   I +LV
Sbjct: 140 LQQLINSNQAIANSKVLINIPEQGVFLSKNEEKASASVVLEVKQGYTLDQNQIDTIYNLV 199

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS-----LSIVQAIQHEIEMNINKALA 250
           + +V NL + ++T+ D  G+ +  ++ + +  G +       + +  + +++ NI   LA
Sbjct: 200 SHSVKNLPLDNITIADQFGQYMVPSKADGSPQGSTQVANQFQVKKQFESDMQRNIVNLLA 259

Query: 251 AFLGVDNFRSAVVAELNMDTQQIRE-IVYDPDSKVERSIRLS-KDAQRSETSQPESAVTV 308
              G +     VV+ +N D ++ +E +V  P+   ++ + +S ++ Q+S +S   +A  V
Sbjct: 260 PMYGQNKVVVNVVSTMNFDQKKTKEQLVSAPNQDEQKGLEISVQELQKSASSDGATAGGV 319

Query: 309 EQNMPHVSDRKVPLPRSLENT--DKKEEQS---NYEINTKSIATTHDNYKLERLSIAVVV 363
                      VP   S  N+   K EE     NYE+N  +       Y ++ L+I V +
Sbjct: 320 ----AGSGTNDVPGYESTSNSGNSKSEENQKTVNYEVNRITNDIIRAPYVVKDLNITVAI 375

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD 404
           +   +    G+  +   +++ +  I K   A +G+   + D
Sbjct: 376 DTKSVNGNPGKIENAELLENAMKGIVKTALADSGVEYEQAD 416


>gi|218508171|ref|ZP_03506049.1| flagellar MS-ring protein [Rhizobium etli Brasil 5]
          Length = 92

 Score =  103 bits (256), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 49/93 (52%), Positives = 70/93 (75%), Gaps = 1/93 (1%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           +IL  V  + I + +AA  FVN P  + LYV L+  D+N+IS+AL+EANI+F++  +G+S
Sbjct: 1   MILGGVGALSIAIILAAALFVNKPAQETLYVGLDAPDLNQISMALAEANINFQVGTDGAS 60

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115
           ISVP+ M GKAR+ LA +GLP +S+N+GYELFD
Sbjct: 61  ISVPAGMTGKARLMLAERGLP-NSANAGYELFD 92


>gi|157414615|ref|YP_001481871.1| flagellar MS-ring protein [Campylobacter jejuni subsp. jejuni
           81116]
 gi|157385579|gb|ABV51894.1| flagellar M-ring protein [Campylobacter jejuni subsp. jejuni 81116]
 gi|307747255|gb|ADN90525.1| Flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni
           M1]
 gi|315931604|gb|EFV10570.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni
           327]
          Length = 560

 Score =  103 bits (256), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 175/369 (47%), Gaps = 33/369 (8%)

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L + NI +++ ++ + I VP   V + R+ +A++GL    S  G+E FD   +FG 
Sbjct: 68  IVAKLEQNNIPYKL-ESENKILVPQDQVYRQRMFIASEGL-IKDSRVGFEAFD-TQAFGA 124

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAI 180
           T+  Q +   RA+EGE+ARTI+++  I +A VHI  P    F +    PTASV+  +R  
Sbjct: 125 TNEEQRVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASVVVNVREG 184

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQH 239
                K  + I+++V+AAVP L   +V + D +G  L   E  E +++   +      + 
Sbjct: 185 LKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIKFKSDQEK 244

Query: 240 EIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
            +E  I + LA F  G+D  + +V  + +   Q+ +  +YDP+  V     L++  +R+ 
Sbjct: 245 ALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLNE--ERTG 302

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEIN--------TKSIATTHD 350
              PE      Q +P       P    +E  D K +   Y+ N        +K+I  T  
Sbjct: 303 RKDPEI-----QGVPGAVSNIGP----VEGLDNKGQIDTYKKNQVTTNNELSKTITNTKK 353

Query: 351 NY-KLERLSIAVVVNKGRLTEVLGRSADQGK-----IDSYLAEINKIVSAATGINSRRGD 404
            +  + R S AV ++ G+  +V+  + D            LA +  IV      ++ RGD
Sbjct: 354 QFATVLRTSAAVTID-GKYQDVVDENGDVKSEYVPLTKEELASVESIVKNTINFSATRGD 412

Query: 405 TITITSMDF 413
           ++ + ++ F
Sbjct: 413 SVVVQNLPF 421


>gi|21231374|ref|NP_637291.1| flagellar MS-ring protein [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66768573|ref|YP_243335.1| flagellar MS-ring protein [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188991617|ref|YP_001903627.1| flagellar MS-ring protein [Xanthomonas campestris pv. campestris
           str. B100]
 gi|21113037|gb|AAM41215.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66573905|gb|AAY49315.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004]
 gi|167733377|emb|CAP51578.1| Flagellar biosynthesis lipoprotein FliF [Xanthomonas campestris pv.
           campestris]
          Length = 573

 Score =  103 bits (256), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 132/571 (23%), Positives = 248/571 (43%), Gaps = 43/571 (7%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
           Q+F    S+  TR L + ++I + +   +A  F+   P Y  LY  L+       +  L 
Sbjct: 19  QWFDRIRSMQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQALYTGLDDKGNAEAADLLR 78

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
            A I F+I  +  +ISVP   +  AR+ LA  GL    +  G+EL +K   FG++ F++ 
Sbjct: 79  TAQIPFKIDQSTGAISVPQDRLYDARLKLAGSGLTGQQTGGGFELMEKDPGFGVSQFVEN 138

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYK 186
                ALE E++RTI ++  +  ARVH+ +P   +F +     +ASV+  +R        
Sbjct: 139 ARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQGLERN 198

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN-- 244
             +AI +LVA+++P++    VTV+D +G++L+  +   +    +    Q  + E   N  
Sbjct: 199 QVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESSYNQR 258

Query: 245 INKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPDSKVERSIRLSKDAQRSETSQ-P 302
           I + L    G       V  +++    ++ RE+ Y+ +    RS ++S  +  +   Q P
Sbjct: 259 IRELLEPMTGAGRVNPEVSVDMDFSVVEEAREL-YNGEPAKLRSEQVSDSSTSATGPQGP 317

Query: 303 ESAVT----------VEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
             A +               P           +      K    NYE++     T     
Sbjct: 318 PGATSNSPGQPPAPAATAGAPGAPAAGQAATPAAPTESSKSATRNYELDRTLQHTRQPAG 377

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
           +++R+S+AV+++        G+  +Q    + L  I  +V  A G ++ RGDT+++ +  
Sbjct: 378 RIKRVSVAVLLDNVPRPGAKGKIVEQPLTAAELTRIEGLVKQAVGFDAARGDTVSVMNAP 437

Query: 413 FLEN--------QLFNSGTVQVSFMDILSRHFATVINALVF-LVGTLLVTFLGLHALRRL 463
           F+          + +    VQ     ++    A V+ AL+F +V   L    G  A++  
Sbjct: 438 FVREAVAGEEGPKWWEDPRVQNGLRLLVG---AVVVLALLFGVVRPTLRQLTGTAAVKEK 494

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
           H     KKG   G       P S+ V   ++  D+  +    +D     ++ +  I    
Sbjct: 495 H-----KKGGNDGT------PQSADVR--MVDEDDDLMPRLEEDTAQIGQDKKLPIALPD 541

Query: 524 SKQSDLRLL-HMIEINEERFAKILRKWARSE 553
           + +  +RL    ++ + +R A++++ W  SE
Sbjct: 542 AYEERVRLAREAVKADSKRVAQVVKGWVASE 572


>gi|57168454|ref|ZP_00367588.1| flagellar M-ring protein FliF [Campylobacter coli RM2228]
 gi|305432873|ref|ZP_07402031.1| flagellar M-ring protein FliF [Campylobacter coli JV20]
 gi|57020262|gb|EAL56936.1| flagellar M-ring protein FliF [Campylobacter coli RM2228]
 gi|304444027|gb|EFM36682.1| flagellar M-ring protein FliF [Campylobacter coli JV20]
          Length = 560

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 174/369 (47%), Gaps = 33/369 (8%)

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L + N+ + I ++ S I VP   V + R+ +A++GL    S  G+E FD   SFG 
Sbjct: 68  IVAKLEQNNVPY-ILESESKILVPQDQVYRQRMFIASEGL-IKDSRVGFEAFD-TQSFGA 124

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAI 180
           T+  Q +   RA+EGE+ARTI+++  I +A VHI  P    F +    PTASV+  +R  
Sbjct: 125 TNEEQRVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASVVVNVREG 184

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQH 239
                K  + I+++V+AA+P L   +V + D +G  L   E  E +++   +      + 
Sbjct: 185 LKLTRKQIDGIKNIVSAAIPKLTKENVRISDQSGVPLDEQEAYEDDLVRAQIKYKSDQER 244

Query: 240 EIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
            +E  I + LA +  G D  R +V  + +   Q+ +  +YDP+  V     L++  +R+ 
Sbjct: 245 ALEDKIIETLAPYAGGTDKVRVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLNE--ERTG 302

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEIN--------TKSIATTHD 350
             +PE      Q +P       P    +E  D K +   Y+ N        +K+I  T  
Sbjct: 303 RKEPEI-----QGVPGAVSNIGP----VEGLDNKGQIDTYKKNQVTTNNELSKTITNTKK 353

Query: 351 NY-KLERLSIAVVVNKGRLTEVLGRSADQGK-----IDSYLAEINKIVSAATGINSRRGD 404
            +  + R S AV ++ G+  +V+  + D            LA +  IV      ++ RGD
Sbjct: 354 QFATVVRTSAAVTID-GKYQDVVDENGDVKSEYVPLSKEELASVESIVKNTINYSANRGD 412

Query: 405 TITITSMDF 413
           ++ + ++ F
Sbjct: 413 SVVVQNLPF 421


>gi|330946240|gb|EGH47422.1| flagellar MS-ring protein [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 227

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/202 (32%), Positives = 104/202 (51%), Gaps = 10/202 (4%)

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
           ARI LA  G+  S +N G+E+ DK    G + FM+     R LEGE+ARTI +++ +  A
Sbjct: 1   ARIQLAQAGVVQSDANIGFEILDKDQGLGTSQFMEATRYRRGLEGELARTISALNNVKGA 60

Query: 153 RVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDV 207
           RVH+ +P    F +   +P+ASV++     R++ PS      AI +LVA +VP L    +
Sbjct: 61  RVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEPS---QVLAIINLVATSVPELSKSQI 117

Query: 208 TVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE 265
           TV+D  G LL+  A   E  + GK     + ++  +   +   L   LG D +++ V A 
Sbjct: 118 TVVDQKGTLLSDQAENSELTMAGKQFDYSRRMEGMLTQRVQNILQPILGNDRYKAEVSAV 177

Query: 266 LNMDTQQIREIVYDPDSKVERS 287
           ++    +     ++PD    RS
Sbjct: 178 VDFSAVESTAESFNPDQPALRS 199


>gi|167465322|ref|ZP_02330411.1| flagellar MS-ring protein [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 425

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 93/401 (23%), Positives = 193/401 (48%), Gaps = 21/401 (5%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           +T+I ++A+ + + I+      + ++   Y   +  L+ +    I   L +  I +++S 
Sbjct: 22  KTKITLIAAAVFM-ILTVGIISYNLSKTEYSTAFTNLQPNAAADIKAYLDQEKIPYKLSA 80

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           +G SI VP++ V + +I + ++GL +   N GY +FD+  SFG T    E+ ++ A++GE
Sbjct: 81  DGKSIGVPTAQVAEVKIAVESKGL-NKGGNVGYGIFDQSGSFGTTDNQFEMQKLNAMQGE 139

Query: 139 IARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINPSVYKSAE--AIRHLV 195
           + + I S   I  ++V I +P+ G F  K   + +ASV++           +   I +LV
Sbjct: 140 LQQLINSNQAIANSKVLINIPEQGVFLSKNEEKASASVVLEVKQGYTLDQNQIDTIYNLV 199

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS-----LSIVQAIQHEIEMNINKALA 250
           + +V NL + ++T+ D  G+ +  ++ + +  G +       + +  + +++ NI   LA
Sbjct: 200 SHSVKNLPLDNITIADQFGQYMVPSKADGSPQGSTQVANQFQVKKQFESDMQRNIVNLLA 259

Query: 251 AFLGVDNFRSAVVAELNMDTQQIRE-IVYDPDSKVERSIRLS-KDAQRSETSQPESAVTV 308
              G +     VV+ +N D ++ +E +V  P+   ++ + +S ++ Q+S +S   +A  V
Sbjct: 260 PMYGQNKVVVNVVSTMNFDQKKTKEQLVSAPNQDEQKGLEISVQELQKSASSDGATAGGV 319

Query: 309 EQNMPHVSDRKVPLPRSLENT--DKKEEQS---NYEINTKSIATTHDNYKLERLSIAVVV 363
                      VP   S  N+   K EE     NYE+N  +       Y ++ L+I V +
Sbjct: 320 ----AGSGTNDVPGYESTSNSGNSKSEENQKTVNYEVNRITNDIIRAPYVVKDLNITVAI 375

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD 404
           +   +    G+  +   +++ +  I K   A +G+   + D
Sbjct: 376 DTKSVNGNPGKIENAELLENAMKGIVKTALADSGVEYEQAD 416


>gi|121612614|ref|YP_001000028.1| flagellar MS-ring protein [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167004986|ref|ZP_02270744.1| flagellar MS-ring protein [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|87250495|gb|EAQ73453.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 560

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 176/369 (47%), Gaps = 33/369 (8%)

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L + NI +++ ++ + I VP   V + R+ +A++GL    S  G+E FD   +FG 
Sbjct: 68  IVAKLEQNNIPYKL-ESENKILVPQDQVYRQRMFIASEGL-IKDSRVGFEAFD-TQAFGA 124

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAI 180
           T+  Q++   RA+EGE+ARTI+++  I +A VHI  P    F +    PTASV+  +R  
Sbjct: 125 TNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASVVVNVREG 184

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQH 239
                K  + I+++V+AAVP L   +V + D +G  L   E  E +++   +      + 
Sbjct: 185 LKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRVQIKFKSDQEK 244

Query: 240 EIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
            +E  I + LA F  G+D  + +V  + +   Q+ +  +YDP+  V     L++  +R+ 
Sbjct: 245 ALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLNE--ERTG 302

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEIN--------TKSIATTHD 350
              PE      Q +P       P    +E  D K +   Y+ N        +K+I  T  
Sbjct: 303 RKDPEI-----QGVPGAVSNIGP----VEGLDNKGQIDTYKKNQVTTNNELSKTITNTKK 353

Query: 351 NY-KLERLSIAVVVNKGRLTEVLGRSADQGK-----IDSYLAEINKIVSAATGINSRRGD 404
            +  + R S AV ++ G+  +V+  + D            LA +  IV      ++ RGD
Sbjct: 354 QFATVLRTSAAVTID-GKYQDVVDENGDVKSEYVPLTKEELASVESIVKNTINFSATRGD 412

Query: 405 TITITSMDF 413
           ++ + ++ F
Sbjct: 413 SVVVQNLPF 421


>gi|220913732|ref|YP_002489041.1| flagellar M-ring protein FliF [Arthrobacter chlorophenolicus A6]
 gi|219860610|gb|ACL40952.1| flagellar M-ring protein FliF [Arthrobacter chlorophenolicus A6]
          Length = 532

 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 116/420 (27%), Positives = 191/420 (45%), Gaps = 39/420 (9%)

Query: 6   QLLQFFK------SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           Q+  FF        G S  +  + I+   +LV  +  +A   ++  P Y  L+  L+ +D
Sbjct: 4   QITAFFTRMGSGIKGFSAAQRTLAIIGVAVLV--LGTVALTSWLAKPAYTPLFSGLKDTD 61

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
            N I   L + N+ + I++ GS+I VP   V   R+  AA GL  S++ +GY L DK   
Sbjct: 62  ANGIVEQLRKDNVPYEIANGGSTILVPEEKVYDERLKAAAAGL-PSAAATGYSLLDK--- 117

Query: 120 FGLTS--FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
            G+TS  F Q +T  RALEGE+A TIQ++ G+ AA V + +P+   F       TASV +
Sbjct: 118 LGVTSSEFQQSVTYKRALEGELATTIQAMEGVKAAAVRLAIPEKSVFVDKTPDATASVFV 177

Query: 178 RAINPSVYKSA---EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIV 234
               P    S    +A+ HL +AA+ NL   +V+V+DS G +L+   +     G S    
Sbjct: 178 E-TQPGTTLSPDKVQAVVHLTSAAIENLKPANVSVVDSQGNVLST--VGGGAAGSSSKQA 234

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
              Q     ++   L + +G  N   AV A++  ++ Q R   +   + V     LS ++
Sbjct: 235 GEYQERTTDSVKAVLDSVVGPGNATVAVAADVTGESAQQRSETFTAAADVP---ALS-ES 290

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT-DKKEEQSNYEINTKSIATTHDNYK 353
            +SET             P   +  VP   +  +T D  +   N  +N  +         
Sbjct: 291 TKSETYTGTGGGAAGVLGPD--NIAVPGGTNGNSTFDSTDSTKNNAVNKVTEDRIIPQGA 348

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           ++R +I+V +N+     V             LA +  +V++A G +  RGD +T+  + F
Sbjct: 349 VKRQTISVAINQAAAAGV------------NLASVRSLVTSAAGADPARGDVVTVEVLPF 396


>gi|332305659|ref|YP_004433510.1| flagellar M-ring protein FliF [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172988|gb|AEE22242.1| flagellar M-ring protein FliF [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 568

 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 110/467 (23%), Positives = 215/467 (46%), Gaps = 41/467 (8%)

Query: 15  TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF 74
           T + R  +L++A VI V I +F+    +   P Y  L  K++  ++        +  ID+
Sbjct: 38  TDMVRQLMLVVALVICVAIAVFIM--IWAQEPDYRPL-AKMQTQELIEALDYFDQNQIDY 94

Query: 75  RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134
           R+   G+++ V S      ++ +A QGL S   + G ++  +   FG++  ++++    A
Sbjct: 95  RL--EGNTVYVSSDQYQDIKLGMARQGL-SQGVSEGTDIIMQDMGFGVSQRVEKVRLKHA 151

Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIR 192
            E ++ART++ +S +  A+V + +P    F +   + +A+V+I A   ++  S E  +I 
Sbjct: 152 REQQLARTLEEMSAVTRAKVLLALPKENVFARREKKASATVVITARRGAIMGSEEVSSIV 211

Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHEIEMNINKALA 250
            +VA+AV  L+   VTV DS G+LL +   +       K   + +  + E    I+  L 
Sbjct: 212 DIVASAVQGLEPERVTVTDSNGRLLNSGSQDSEAARSKKEFEMERKRESEYLQKIDSILI 271

Query: 251 AFLGVDNFRSAVVAELNMDTQQIREI--VYDPDSKVERSIRLSKDAQ---------RSET 299
             LG+ N+ +   A++ MD   + +    Y+PD    RS    +D            + T
Sbjct: 272 PVLGLGNYTAQ--ADVTMDFTAVEQTKRSYNPDLPAVRSEMTVEDNSVGGVLGGIPGALT 329

Query: 300 SQPESAVTVEQNMPH---VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
           +QP     ++ N+P     S+ +  +P      + KEE  NYE++T    T      + R
Sbjct: 330 NQP----PLDSNIPEEAIASNTQTTMP----GRNHKEETRNYELDTTISHTKQQTGVIRR 381

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           LS++V ++    T   G +    +  + L +I +++    G +  RGD++ + S+ F   
Sbjct: 382 LSVSVALDHIATTGEDGTTTFSPRSQAELLDIRRLLQGGLGFDVTRGDSLEVVSIPF--- 438

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
               S   +V+  ++        +  L  ++G L++  L L  +R +
Sbjct: 439 ----SREGEVALEEVPIWEDPKFMPILKLVIGGLVIIVLLLAVVRPM 481


>gi|149908770|ref|ZP_01897431.1| flagellar M-ring protein [Moritella sp. PE36]
 gi|149808312|gb|EDM68251.1| flagellar M-ring protein [Moritella sp. PE36]
          Length = 580

 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 122/503 (24%), Positives = 219/503 (43%), Gaps = 79/503 (15%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNS----PHYDNLYVKLEVSDVNRISVA 66
            +SG  L R ++    S+  + ++  + A   V S      Y  LY K E+ D   I   
Sbjct: 25  MRSGLKLTREKLYRFRSLFFIGLLSSLIAAAIVASLWTAEQYVPLYGKQEMYDKANILEL 84

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L +   DF++      I V  S + + R+ LAA G+  +       L  K+   G + FM
Sbjct: 85  LEQQKADFQLDTESGQILVAKSQLAQLRMALAALGVKKNIPMGMGGLEGKMG-LGTSQFM 143

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG---ARPTASVMIRAINPS 183
           +  +   ALEGE+A +I +I  +  ARVH+ +P+   F  IG    + +ASVM+  + P 
Sbjct: 144 ESKSYRFALEGELALSIITIDAVRNARVHLALPERTLF--IGRHEEQASASVMLD-LQPG 200

Query: 184 VYKS---AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240
              S     AI +LVA++V NL   +++V+D  G+LLT +  + +  G+  +     +++
Sbjct: 201 RELSQGQVSAIINLVASSVTNLKPDNISVVDQAGRLLTLSGSQSSNRGQVATQQVTFKND 260

Query: 241 IEMNINKALAAFL----GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           +E  + + ++  L    G +NFR  + A+L+ +             +VE ++        
Sbjct: 261 LEARLTRRISELLYPLVGAENFRIQLTADLDFN-------------EVEETV-------- 299

Query: 297 SETSQPESAVTVEQNMPHVSD--RKVPLPRSLEN------------------------TD 330
            ET  PE+ +T E     VS     V +P SL N                        T 
Sbjct: 300 -ETVSPETVLTKENIREQVSGDVNAVGIPGSLSNLPPVKKVTKKGKKTASSEAESSMITK 358

Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINK 390
           + +    Y +    +   ++  ++  LS++V++N    T        +G  D  LA+I+ 
Sbjct: 359 RNDYSKEYVVGRSVMHKKYEFGRINNLSVSVILNNKIAT------GKEGWSDEELAKISI 412

Query: 391 IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL 450
            +  A GI + RGD + I+  DF+         +    MD++  +   ++   + ++G  
Sbjct: 413 TIKNAIGIVASRGDQLNISGYDFIAVPEITLEALPWWQMDVIQAYLRYIV---ITILGLA 469

Query: 451 LVTF----LGLHALRRLHNIDDA 469
           L+ F    L  H + +L   D+A
Sbjct: 470 LIMFVIRPLTKHFVSQLRQADNA 492


>gi|300854208|ref|YP_003779192.1| flagellar M-ring protein FliF [Clostridium ljungdahlii DSM 13528]
 gi|300434323|gb|ADK14090.1| flagellar M-ring protein FliF [Clostridium ljungdahlii DSM 13528]
          Length = 532

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 115/430 (26%), Positives = 194/430 (45%), Gaps = 48/430 (11%)

Query: 4   LDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           + ++ Q FK+       L R + +  + + +  +   +     +    Y  L+  L+ +D
Sbjct: 1   MGKISQIFKNLIGKWKDLSRNKKIAFSVIAVGIVAALIFGGLTLGKTKYAVLFSNLDATD 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I   L    +D ++   GSSI VP   V K R+   ++ +  ++ + G+EL DK N 
Sbjct: 61  SATIYKQLQSDKVDAKVQ--GSSILVPKDQVDKIRMQTLSE-VQLTNGSQGFELLDKSN- 116

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           FG T     I   RAL+GEI RTI+S+  I  ARVH+V+PD   F K     +ASV I+ 
Sbjct: 117 FGQTDQQMNINYQRALQGEIERTIKSLPQIENARVHLVLPDNTEFVKDTQPGSASVTIK- 175

Query: 180 INPSVYKSAEAIRHLVA---AAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIV-- 234
           + P    S +  + LVA    +V N+   +V V+D    LL+  ++ +N  G S S    
Sbjct: 176 LKPGQTLSQDQTKALVALVSGSVKNIPKENVEVIDDKLNLLS-RDLYQNKSGDSSSSTIP 234

Query: 235 ----QAIQHEIEMNINKALAAFL----GVDNFRSAVVAELNMDTQQIREIVYDPDSKVER 286
               Q +Q + E ++ K L A L    G +  +  + A+L+ D  Q     YDP     +
Sbjct: 235 ADKQQELQQKYEDDMEKRLLAMLEPIYGKNKVKVQINADLDFDAVQQDSTTYDP-----K 289

Query: 287 SIRLSK---DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTK 343
           ++ +S+   +   +  +   S   V+ NM + S        S +N    E   NY+++  
Sbjct: 290 NVVVSEHTVNNTNTGATNNASTSPVDNNMSNTSVNNANGGNSTQN----EVTRNYDVS-- 343

Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403
                    K+E+ +I    +  RLT  +  + D    D+    I  +  +A G N  RG
Sbjct: 344 ---------KVEQKTIKAPGSVKRLTASV--ALDGTVDDATKTSIRNLAVSAIGYNQTRG 392

Query: 404 DTITITSMDF 413
           DTI + ++ F
Sbjct: 393 DTINVEAIPF 402


>gi|251797445|ref|YP_003012176.1| flagellar MS-ring protein [Paenibacillus sp. JDR-2]
 gi|247545071|gb|ACT02090.1| flagellar M-ring protein FliF [Paenibacillus sp. JDR-2]
          Length = 527

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 93/382 (24%), Positives = 185/382 (48%), Gaps = 27/382 (7%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           +L QF+     +G+ + + L + I   ++  +   +      Y+  +  L+ +D   I  
Sbjct: 11  RLTQFWGQ---MGKKQKIGLGASIGALLLTIVILTYIFTRTDYEVAFQNLDTTDAAAIMT 67

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L    I +++S +G SISVPS++  + R+ + +QGL  + S  G+E F+  ++FG T  
Sbjct: 68  YLDGNGIPYKLSADGQSISVPSAVATRTRVDVGSQGLVQNGS-IGFEAFEGGSAFGQTEN 126

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMIR---AI 180
              +  + AL GE+ + +  + G+ +++V I +P    F   +   + +AS+M+      
Sbjct: 127 EFNVKYINALNGEVQQLLNRMQGVQSSKVLINLPKESVFLTPEEKEQASASIMMNFTPGY 186

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS-------LSI 233
            PS  +  +   +LV  AVP L + D+T+    G+L+++ E++ N +G +         I
Sbjct: 187 RPS-QQEVDGYYNLVKTAVPKLAVQDITISSPQGELVSS-EIDGNKIGAATDAAESHFMI 244

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-DSKVERSIRLSK 292
            +  + E++ NI + L+  LG DN   +V +  N D +  +E +  P ++     I +S+
Sbjct: 245 QRKYEAEVKKNIQQFLSPMLG-DNLVISVASSFNFDKKVTQENLVRPLENNNNNGIIVSE 303

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQS----NYEINTKSIATT 348
               S T+   +       +    +  VP   + +NT+   EQS    NY+ +  +    
Sbjct: 304 QQDNSTTTNGSANAG---GVAGTGETDVPGYTATDNTNGSSEQSSRVTNYDYDRINNQIE 360

Query: 349 HDNYKLERLSIAVVVNKGRLTE 370
              Y+L+ LSI++ V + +LT+
Sbjct: 361 SAPYQLKDLSISIGVEQSKLTD 382


>gi|187778748|ref|ZP_02995221.1| hypothetical protein CLOSPO_02343 [Clostridium sporogenes ATCC
           15579]
 gi|187772373|gb|EDU36175.1| hypothetical protein CLOSPO_02343 [Clostridium sporogenes ATCC
           15579]
          Length = 526

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 104/437 (23%), Positives = 196/437 (44%), Gaps = 60/437 (13%)

Query: 4   LDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           +++L +FFK      T   + + +  + + L  I   +A   +     Y  L+  ++ +D
Sbjct: 1   MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              +   L +  ++ ++   G++I VP   V + R+ + ++ +P ++ + G+E+ DK + 
Sbjct: 61  SGAVLQKLKDKKVEAKVE--GNNILVPKDQVDELRMQMLSE-VPLTNGSQGFEILDK-SQ 116

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-- 177
           FG T    +I   RAL+GE+ RTI+    +  +RVH+V+P+  +F K      ASV +  
Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNSRVHLVLPEETAFVKETQPGRASVTLNL 176

Query: 178 ---RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIV 234
              + I+    KS   I  LV+ +V N+   +V V+D+   LLT     +N+   S S+ 
Sbjct: 177 KKGQTISKEQVKS---IVALVSGSVKNIPKENVEVIDNNMNLLT-----KNLFDASGSLE 228

Query: 235 QAI-----QHEIEMNINK--------ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD 281
           +A      Q +++ N  K         L A  G D  +  +  +L+ D  +   + YDP 
Sbjct: 229 EATTSAEKQQQLQKNYEKDLQNRLVSMLEAVYGKDKVKVNINTDLDFDAVKTNSVTYDPK 288

Query: 282 SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEIN 341
           + V     + +  Q +      +   V+ NM +   R        E + + E   NYEI+
Sbjct: 289 NVVVSEHSIKEKNQNNADGNNTNGSIVDNNMVN---RTTQNNNGSETSSRDETTKNYEIS 345

Query: 342 TKSIATTHDNYK----LERLSIAVVVNKGRLTEVLGRSADQGKIDSYL-AEINKIVSAAT 396
                T  D+ K    ++RL+ ++V++              G ID      +  +  +A 
Sbjct: 346 ----KTQQDSIKAPGSVKRLTASIVLD--------------GNIDEETRTAVRNLAVSAI 387

Query: 397 GINSRRGDTITITSMDF 413
           G + +RGD I+I  + F
Sbjct: 388 GYDEKRGDAISIEGLPF 404


>gi|295319980|gb|ADG00358.1| fliF; flagellar M-ring protein FliF [Clostridium botulinum F str.
           230613]
          Length = 526

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 106/435 (24%), Positives = 198/435 (45%), Gaps = 56/435 (12%)

Query: 4   LDQLLQFFK----SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           +++L +FFK      T   + + +  + + L  I   +A   +     Y  L+  ++ +D
Sbjct: 1   MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              +   L +  ++ ++   G++I VP   V + R+ + ++ +P ++ + G+E+ DK + 
Sbjct: 61  SGTVLQKLKDKKVEAKVE--GNNILVPKDKVDELRMQMLSE-VPLTNGSQGFEILDK-SQ 116

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           FG T    +I   RAL+GE+ RTI+    +  +RVH+V+P+  +F K      ASV +  
Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNSRVHLVLPEETAFVKETQPGRASVTLNL 176

Query: 180 INPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI 237
                   +  ++I  LV+ +V N+   +V V+D+   LLT     +N+   S S+ +A 
Sbjct: 177 KQGQTLSKEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLT-----KNLFDASGSLEEAT 231

Query: 238 -----QHEIEMNINK--------ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV 284
                Q +++ N  K         L A  G D  +  +  +L+ D  +   + YDP + V
Sbjct: 232 TSAEKQQQLQKNYEKDLQNRLVSMLEAVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNVV 291

Query: 285 --ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINT 342
             E SI+          +   S   V+ NM +   R        E + + E   NYEI+ 
Sbjct: 292 VSEHSIKEKNQNNAGGNNTNGSV--VDNNMVN---RTTQNNNGSETSSRDENTKNYEIS- 345

Query: 343 KSIATTHDNYK----LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
               T  D+ K    ++RL+ ++V++ G + E   RSA           +  +  +A G 
Sbjct: 346 ---KTQQDSIKAPGSVKRLTASIVLD-GNIDEET-RSA-----------VRNLAVSAIGY 389

Query: 399 NSRRGDTITITSMDF 413
           + +RGDTI +  + F
Sbjct: 390 DEKRGDTINVEGLPF 404


>gi|212639567|ref|YP_002316087.1| flagellar MS-ring protein [Anoxybacillus flavithermus WK1]
 gi|212561047|gb|ACJ34102.1| Flagellar basal body M-ring protein FliF [Anoxybacillus
           flavithermus WK1]
          Length = 529

 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 141/289 (48%), Gaps = 15/289 (5%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +++L  F+   T   +   L L  +++V + L     FF    ++  LY  L   +  +I
Sbjct: 9   IERLKLFWSERTKQQKMMALGLIGLLVVSVAL---TAFFATRTNFVPLYSNLSPQEAGQI 65

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L +  I  +I+DNG++I VP  +V   ++ LAA+G+P S S   Y  F K + FG+T
Sbjct: 66  KATLDQRGIKSQITDNGTTILVPEQLVNTLKVELAAEGIPDSGS-IDYSFFGKNSGFGMT 124

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG-ARPTASVMIRAINP 182
                + ++ A++ E+A  I+SI G+  A+V I +P    F  +G  +  AS  I     
Sbjct: 125 DNEFNVLKIEAMQTELANLIKSIDGVEDAKVMINLPQPTIF--VGDQQEEASASIVLKTK 182

Query: 183 SVYKSAE----AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS----IV 234
           + YK  E    ++ HLV+ +VPNL   ++ +++   +       E    GK+ +    + 
Sbjct: 183 AGYKFNEQQIKSLYHLVSKSVPNLPTDNIVIMNQYFEYFDLKNEENFSSGKTFAEQYEVK 242

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK 283
           Q I+ +I+  + + L   +G D    +V A+++   +  +E + +P  K
Sbjct: 243 QQIERDIQRRVQQMLGTMIGQDKVVVSVTADVDFTQENRQEELVEPVDK 291


>gi|126697819|ref|YP_001086716.1| flagellar MS-ring protein [Clostridium difficile 630]
 gi|115249256|emb|CAJ67069.1| Flagellar M-ring protein FliF [Clostridium difficile]
          Length = 516

 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 110/414 (26%), Positives = 184/414 (44%), Gaps = 53/414 (12%)

Query: 20  TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN 79
           T+I +   VI + + L   A    +   Y  L+ +L+  D   IS  L    ID ++   
Sbjct: 27  TKIALGIGVIAICLALVFTA-ISASKNKYAVLFSELDAQDAADISAELESKKIDTKV--K 83

Query: 80  GSSISVPSSMVGKARIHLAAQGLPSSSSNS-GYELFDKVNSFGLTSFMQEITRVRALEGE 138
           GS+I VP + V K R+ LA    PS +  S G+ L D  +S GLT    +I + R ++GE
Sbjct: 84  GSTIYVPRTEVDKLRLELA----PSLTGGSKGFALMDDSSSIGLTDEEFQIKKQRMIQGE 139

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRH---LV 195
           I +TI+S   +   RVHI   +   F K  A P ++ +   + P        I+    L+
Sbjct: 140 IEKTIKSFPQVEDTRVHITFGESSVFEK-EAVPGSAAVYLMLKPGTTLEKNQIKSVMALI 198

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEME-RNI------------LGKSLSIVQAIQHEIE 242
           + +V N+   +V V+D+   LL+   +E  N+            + K+ +  QA+  ++E
Sbjct: 199 SGSVTNIPEKNVQVIDNKMNLLSEGILEDENVDENNQPINSGISVDKNKASEQALNKQLE 258

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS-- 300
            +I + L    G    ++ V A+L+ DT +  EI  DPD    +  R SK++ +S  +  
Sbjct: 259 KSILEMLEPIFGKGKVKATVNADLSFDTAEKTEIKIDPDKVAIKETR-SKNSSKSAANNV 317

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           Q   A    Q   + ++ +  L  S E                        Y+  ++   
Sbjct: 318 QGVDANMNNQGNNNGTNTEDSLDESFE------------------------YETGKIETH 353

Query: 361 VVVNKGRLTEVLGRSADQGKI-DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
            +V  G L  +    A  GKI     A++  IV+ A G++  RGDT+++ SM F
Sbjct: 354 TIVAPGELNRLTASVAIDGKIAKGVQADVEDIVNNAIGMDGARGDTLSVVSMVF 407


>gi|289670544|ref|ZP_06491619.1| flagellar MS-ring protein [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 335

 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 112/212 (52%), Gaps = 2/212 (0%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
           Q+F    SL  TR L + ++I + +   +A  F+   P Y +LY  L+       +  L 
Sbjct: 19  QWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAADLLR 78

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
            A I ++I     +ISVP   +  AR+ LA  GL    +  G+EL +K   FG++ F++ 
Sbjct: 79  TAQIPYKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQFVEN 138

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYK 186
                ALE E++RTI ++  +  ARVH+ +P   +F +     +ASV+  +R        
Sbjct: 139 ARYQHALETELSRTISTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQGLERN 198

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
             +AI +LVA+++P++    VTV+D +G++L+
Sbjct: 199 QVDAIVNLVASSIPDMTPERVTVVDQSGRMLS 230


>gi|168183269|ref|ZP_02617933.1| flagellar M-ring protein FliF [Clostridium botulinum Bf]
 gi|237796102|ref|YP_002863654.1| flagellar MS-ring protein [Clostridium botulinum Ba4 str. 657]
 gi|182673721|gb|EDT85682.1| flagellar M-ring protein FliF [Clostridium botulinum Bf]
 gi|229262258|gb|ACQ53291.1| flagellar M-ring protein FliF [Clostridium botulinum Ba4 str. 657]
          Length = 526

 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 108/436 (24%), Positives = 200/436 (45%), Gaps = 58/436 (13%)

Query: 4   LDQLLQFFK----SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           +++L +FFK      T   + + +  + + L  I   +A   +     Y  L+  ++ +D
Sbjct: 1   MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              +   L +  ++ ++   G++I VP   V + R+ + ++ +P ++ + G+E+ DK + 
Sbjct: 61  SGTVLQKLKDKKVEAKVE--GNNILVPKDQVDELRMQMLSE-VPLTNGSQGFEILDK-SQ 116

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-- 177
           FG T    +I   RAL+GE+ RTI+    +   RVH+V+P+  +F K      ASV +  
Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNTRVHLVLPEETAFVKETQPGRASVTLNL 176

Query: 178 -RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQA 236
            +  N S  +  ++I  LV+ +V N+   +V V+D+   LLT     +N+   S S+ +A
Sbjct: 177 KQGQNLS-KEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLT-----KNLFDASGSLEEA 230

Query: 237 I-----QHEIEMNINK--------ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK 283
                 Q +++ N  K         L A  G D  +  +  +L+ D  +   + YDP + 
Sbjct: 231 TTSAEKQQQLQKNYEKDLQNRLVSMLEAVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNV 290

Query: 284 V--ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEIN 341
           V  E SI+          +   S   V+ NM +   R        E + + E   NYEI+
Sbjct: 291 VVSEHSIKEKNQNNAGGNNTNGSV--VDNNMVN---RTTQNNNGSETSSRDENTKNYEIS 345

Query: 342 TKSIATTHDNYK----LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG 397
                T  D+ K    ++RL+ ++V++ G + E   RSA           +  +  +A G
Sbjct: 346 ----KTQQDSIKAPGSVKRLTASIVLD-GNIDEET-RSA-----------VRNLAVSAIG 388

Query: 398 INSRRGDTITITSMDF 413
            + +RGDTI +  + F
Sbjct: 389 YDEKRGDTINVEGLPF 404


>gi|170755222|ref|YP_001782279.1| flagellar MS-ring protein [Clostridium botulinum B1 str. Okra]
 gi|169120434|gb|ACA44270.1| flagellar M-ring protein FliF [Clostridium botulinum B1 str. Okra]
          Length = 526

 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 106/435 (24%), Positives = 197/435 (45%), Gaps = 56/435 (12%)

Query: 4   LDQLLQFFK----SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           +++L +FFK      T   + + +  + + L  I   +A   +     Y  L+  ++ +D
Sbjct: 1   MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              +   L +  ++ ++   G++I VP   V + R+ + ++ +P ++ + G+E+ DK + 
Sbjct: 61  SGTVLQKLKDKKVEAKVE--GNNILVPKDKVDELRMQMLSE-VPLTNGSQGFEILDK-SQ 116

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           FG T    +I   RAL+GE+ RTI+    +   RVH+V+P+  +F K      ASV +  
Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNTRVHLVLPEETAFVKETQPGRASVTLNL 176

Query: 180 INPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI 237
                   +  ++I  LV+ +V N+   +V V+D+   LLT     +N+   S S+ +A 
Sbjct: 177 KQGQTLSKEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLT-----KNLFDASGSLEEAT 231

Query: 238 -----QHEIEMNINK--------ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV 284
                Q +++ N  K         L A  G D  +  +  +L+ D  +   + YDP + V
Sbjct: 232 TSAEKQQQLQKNYEKDLQNRLVSMLEAVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNVV 291

Query: 285 --ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINT 342
             E SI+          +   S   V+ NM +   R        E + + E   NYEI+ 
Sbjct: 292 VSEHSIKEKNQNNAGGNNTNGSV--VDNNMVN---RTTQNNNGSETSSRDENTKNYEIS- 345

Query: 343 KSIATTHDNYK----LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
               T  D+ K    ++RL+ ++V++ G + E   RSA           +  +  +A G 
Sbjct: 346 ---KTQQDSIKAPGSVKRLTASIVLD-GNIDEET-RSA-----------VRNLAVSAIGY 389

Query: 399 NSRRGDTITITSMDF 413
           + +RGDTI +  + F
Sbjct: 390 DEKRGDTINVEGLPF 404


>gi|212634367|ref|YP_002310892.1| flagellar MS-ring protein [Shewanella piezotolerans WP3]
 gi|212555851|gb|ACJ28305.1| Flagellar FliF M-ring protein [Shewanella piezotolerans WP3]
          Length = 531

 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 108/445 (24%), Positives = 200/445 (44%), Gaps = 25/445 (5%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  L  ++   ++ ++   L +  I ++I   G  + VP       ++ L+  
Sbjct: 23  IWAQEPEYRPLG-QMSTQEMVQVLDELDKNKIKYQI--QGDVVKVPEDKYQDVKMMLSRA 79

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GL  +++N  Y    K + FG++  M++     + E  +AR I+ +  +  A+V + +P 
Sbjct: 80  GLDQAAANDDY--LSKDSGFGVSQRMEQARLKHSQEQNLARAIEELKSVSRAKVILALPK 137

Query: 161 MGSFRKIGARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
              F +  ++P+A+V++      +  +  ++I  +VA+AV NL+   VTV DS G+LL +
Sbjct: 138 ENVFARNRSKPSATVVVNTRRGGLGQEEVDSIVDIVASAVHNLEPNKVTVTDSNGRLLNS 197

Query: 220 NEME--RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
              +    I  + L IVQ  + E    +   L   LG +NF S V  +++MD   + +  
Sbjct: 198 GSQDGVSAIARRELEIVQQKESEYRNKVESILMPILGPENFTSQV--DVSMDFTAVEQTA 255

Query: 278 --YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT------ 329
             Y+PD    RS  + ++     T+         Q  P  SD  +P     E T      
Sbjct: 256 KRYNPDLPALRSEMVVENNSNGGTTGGIPGALSNQP-PMNSD--IPQEVGTETTSVSSGS 312

Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN-KGRLTEVLGRSADQGKIDSYLAEI 388
             KE   N+E++T    T      L R+S++V V+ K       G  +   + +  LA I
Sbjct: 313 SHKEATRNFELDTTISHTRQQIGTLRRVSVSVAVDFKNAPAAEDGSVSRVPRTEQELANI 372

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            +++  A G N++RGD I + ++ F++  + ++   ++       R     +  LV L  
Sbjct: 373 RRLLEGAVGFNTQRGDMIEVVTVPFMDQLIEDAPAPEMWEQPWFWRAVKLGLGTLVALA- 431

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGE 473
             +V F+    L+R+   D AK  E
Sbjct: 432 --IVMFIISPMLKRIVYPDSAKLPE 454


>gi|326796470|ref|YP_004314290.1| flagellar M-ring protein FliF [Marinomonas mediterranea MMB-1]
 gi|326547234|gb|ADZ92454.1| flagellar M-ring protein FliF [Marinomonas mediterranea MMB-1]
          Length = 558

 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 101/392 (25%), Positives = 182/392 (46%), Gaps = 23/392 (5%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            + + P Y  +   +   + ++I   L+  +I F++  N  ++ V      +AR+ LA  
Sbjct: 48  LWSSGPDYKPVLSSITDYNADQIVEILNTNSIPFKLDQNTGALLVEDEYYHQARLKLAGS 107

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           G+  S    G E+ D+  + G + F++     R LEGE++RTI S+  + +ARVH+ +P 
Sbjct: 108 GI-VSDKIVGLEIMDQDQALGTSQFIETARYRRGLEGELSRTITSLQSVKSARVHLAIPK 166

Query: 161 MGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
              F +   +PTASV +     R ++ S     +AI +LVA+++  L   DVTV+D  G 
Sbjct: 167 ESVFVRDTRKPTASVFLELYPGRRLDRS---QVDAIVNLVASSISQLSDKDVTVVDQRGT 223

Query: 216 LLTANE--MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI 273
           LLT  +   E +I GK     + ++  +   +N  L   +G   F++ V A+++    + 
Sbjct: 224 LLTDKDSSSELSIAGKQFDYTRRVEEVMLRRVNNILMPVVGSGRFKAEVSADIDFTAVEQ 283

Query: 274 REIVYDPDSKVERSIRLSKDAQRSE----------TSQPESAVTV-EQNMPHVSDRKVPL 322
            +  Y+PD    RS +  K+ + S           T+QP  A+   EQ   + +      
Sbjct: 284 TDEQYNPDLLALRSEQTLKERRSSAGGNNGVPGALTNQPPGAINAPEQAAVNGAPIGGGS 343

Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI- 381
             S     K+E   N+E++     T      + RLS+AVVV+            ++    
Sbjct: 344 GSSGTGQSKEETTRNFELDRSISYTKRQQGTVRRLSVAVVVDDVASLNTETSEIERAPWS 403

Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           D  L+ +  +V  A G +  RGD++++ +  F
Sbjct: 404 DEELSRLTLLVRDAVGYDPSRGDSVSVINSPF 435


>gi|168180913|ref|ZP_02615577.1| flagellar M-ring protein fliF [Clostridium botulinum NCTC 2916]
 gi|182668331|gb|EDT80310.1| flagellar M-ring protein fliF [Clostridium botulinum NCTC 2916]
          Length = 526

 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 106/435 (24%), Positives = 197/435 (45%), Gaps = 56/435 (12%)

Query: 4   LDQLLQFFK----SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           +++L +FFK      T   + + +  + + L  I   +A   +     Y  L+  ++ +D
Sbjct: 1   MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              +   L +  ++ ++   G++I VP   V + R+ + ++ +P ++ + G+E+ DK + 
Sbjct: 61  SGTVLQKLKDKKVEAKVE--GNNILVPKDKVDELRMQMLSE-VPLTNGSQGFEILDK-SQ 116

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           FG T    +I   RAL+GE+ RTI+    +   RVH+V+P+  +F K      ASV +  
Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNTRVHLVLPEETAFVKETQPGRASVTLNL 176

Query: 180 INPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI 237
                   +  ++I  LV+ +V N+   +V V+D+   LLT     +N+   S S+ +A 
Sbjct: 177 KQGQTLSKEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLT-----KNLFDASGSLEEAT 231

Query: 238 -----QHEIEMNINK--------ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV 284
                Q +++ N  K         L A  G D  +  +  +L+ D  +   + YDP + V
Sbjct: 232 TSAEKQQQLQKNYEKDLQNRLVSMLEAVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNVV 291

Query: 285 --ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINT 342
             E SI+          +   S   V+ NM +   R        E + + E   NYEI+ 
Sbjct: 292 VSEHSIKEKNQNNAGGNNTNGSV--VDNNMVN---RTTQNNNGSETSSRDENTKNYEIS- 345

Query: 343 KSIATTHDNYK----LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
               T  D+ K    ++RL+ ++V++ G + E   RSA           +  +  +A G 
Sbjct: 346 ---KTQQDSIKAPGSVKRLTASIVLD-GNIDEET-RSA-----------VRNLAVSAIGY 389

Query: 399 NSRRGDTITITSMDF 413
           + +RGDTI +  + F
Sbjct: 390 DEKRGDTINVEGLPF 404


>gi|226950075|ref|YP_002805166.1| flagellar M-ring protein fliF [Clostridium botulinum A2 str. Kyoto]
 gi|226842546|gb|ACO85212.1| flagellar M-ring protein fliF [Clostridium botulinum A2 str. Kyoto]
          Length = 526

 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 108/436 (24%), Positives = 200/436 (45%), Gaps = 58/436 (13%)

Query: 4   LDQLLQFFK----SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           +++L +FFK      T   + + +  + + L  I   +A   +     Y  L+  ++ +D
Sbjct: 1   MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              +   L +  ++ ++   G++I VP   V + R+ + ++ +P ++ + G+E+ DK + 
Sbjct: 61  SGTVLQKLKDKKVEAKVE--GNNILVPKDKVDELRMQMLSE-VPLTNGSQGFEILDK-SQ 116

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-- 177
           FG T    +I   RAL+GE+ RTI+    +   RVH+V+P+  +F K      ASV +  
Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNTRVHLVLPEETAFVKETQPGRASVTLNL 176

Query: 178 -RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQA 236
            +  N S  +  ++I  LV+ +V N+   +V V+D+   LLT     +N+   S S+ +A
Sbjct: 177 KQGQNLS-KEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLT-----KNLFDASGSLEEA 230

Query: 237 I-----QHEIEMNINK--------ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK 283
                 Q +++ N  K         L A  G D  +  +  +L+ D  +   + YDP + 
Sbjct: 231 TTSAEKQQQLQKNYEKDLQNRLVSMLEAVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNV 290

Query: 284 V--ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEIN 341
           V  E SI+          +   S   V+ NM +   R        E + + E   NYEI+
Sbjct: 291 VVSEHSIKEKNQNNAGGNNTNGSV--VDNNMVN---RTTQNNNGSETSSRDENTKNYEIS 345

Query: 342 TKSIATTHDNYK----LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG 397
                T  D+ K    ++RL+ ++V++ G + E   RSA           +  +  +A G
Sbjct: 346 ----KTQQDSIKAPGSVKRLTASIVLD-GNIDEET-RSA-----------VRNLAVSAIG 388

Query: 398 INSRRGDTITITSMDF 413
            + +RGDTI +  + F
Sbjct: 389 YDEKRGDTINVEGLPF 404


>gi|148380620|ref|YP_001255161.1| flagellar MS-ring protein [Clostridium botulinum A str. ATCC 3502]
 gi|153933327|ref|YP_001384906.1| flagellar MS-ring protein [Clostridium botulinum A str. ATCC 19397]
 gi|153935162|ref|YP_001388375.1| flagellar MS-ring protein [Clostridium botulinum A str. Hall]
 gi|148290104|emb|CAL84223.1| flagellar M-ring protein [Clostridium botulinum A str. ATCC 3502]
 gi|152929371|gb|ABS34871.1| flagellar M-ring protein FliF [Clostridium botulinum A str. ATCC
           19397]
 gi|152931076|gb|ABS36575.1| flagellar M-ring protein FliF [Clostridium botulinum A str. Hall]
          Length = 526

 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 106/435 (24%), Positives = 197/435 (45%), Gaps = 56/435 (12%)

Query: 4   LDQLLQFFK----SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           +++L +FFK      T   + + +  + + L  I   +A   +     Y  L+  ++ +D
Sbjct: 1   MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              +   L +  ++ ++   G++I VP   V + R+ + ++ +P ++ + G+E+ DK + 
Sbjct: 61  SGTVLQKLKDKKVEAKVE--GNNILVPKDKVDELRMQMLSE-VPLTNGSQGFEILDK-SQ 116

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           FG T    +I   RAL+GE+ RTI+    +   RVH+V+P+  +F K      ASV +  
Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNTRVHLVLPEETAFVKETQPGRASVTLNL 176

Query: 180 INPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI 237
                   +  ++I  LV+ +V N+   +V V+D+   LLT     +N+   S S+ +A 
Sbjct: 177 KQGQTLSKEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLT-----KNLFDASGSLEEAT 231

Query: 238 -----QHEIEMNINK--------ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV 284
                Q +++ N  K         L A  G D  +  +  +L+ D  +   + YDP + V
Sbjct: 232 TSAEKQQQLQKNYEKDLQNRLVSMLEAVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNVV 291

Query: 285 --ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINT 342
             E SI+          +   S   V+ NM +   R        E + + E   NYEI+ 
Sbjct: 292 VSEHSIKEKNQNNAGGNNTNGSV--VDNNMVN---RTTQNNNGSETSSRDENTKNYEIS- 345

Query: 343 KSIATTHDNYK----LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
               T  D+ K    ++RL+ ++V++ G + E   RSA           +  +  +A G 
Sbjct: 346 ---KTQQDSIKAPGSVKRLTASIVLD-GNIDEET-RSA-----------VRNLAVSAIGY 389

Query: 399 NSRRGDTITITSMDF 413
           + +RGDTI +  + F
Sbjct: 390 DEKRGDTINVEGLPF 404


>gi|322806993|emb|CBZ04563.1| flagellar M-ring protein FliF [Clostridium botulinum H04402 065]
          Length = 526

 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 106/435 (24%), Positives = 197/435 (45%), Gaps = 56/435 (12%)

Query: 4   LDQLLQFFK----SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           +++L +FFK      T   + + +  + + L  I   +A   +     Y  L+  ++ +D
Sbjct: 1   MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              +   L +  ++ ++   G++I VP   V + R+ + ++ +P ++ + G+E+ DK + 
Sbjct: 61  SGTVLQKLKDKKVEAKVE--GNNILVPKDKVDELRMQMLSE-VPLTNGSQGFEILDK-SQ 116

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           FG T    +I   RAL+GE+ RTI+    +   RVH+V+P+  +F K      ASV +  
Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNTRVHLVLPEETAFVKETQPGRASVTLNL 176

Query: 180 INPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI 237
                   +  ++I  LV+ +V N+   +V V+D+   LLT     +N+   S S+ +A 
Sbjct: 177 KQGQTLSKEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLT-----KNLFDASGSLEEAT 231

Query: 238 -----QHEIEMNINK--------ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV 284
                Q +++ N  K         L A  G D  +  +  +L+ D  +   + YDP + V
Sbjct: 232 TSAEKQQQLQKNYEKDLQNRLVSMLEAVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNVV 291

Query: 285 --ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINT 342
             E SI+          +   S   V+ NM +   R        E + + E   NYEI+ 
Sbjct: 292 VSEHSIKEKNQNNAGGNNTNGSV--VDNNMVN---RTTQNNNGSETSSRDENTKNYEIS- 345

Query: 343 KSIATTHDNYK----LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
               T  D+ K    ++RL+ ++V++ G + E   RSA           +  +  +A G 
Sbjct: 346 ---KTQQDSIKAPGSVKRLTASIVLD-GNIDEET-RSA-----------VRNLAVSAIGY 389

Query: 399 NSRRGDTITITSMDF 413
           + +RGDTI +  + F
Sbjct: 390 DEKRGDTINVEGLPF 404


>gi|258622516|ref|ZP_05717538.1| flagellar M-ring protein [Vibrio mimicus VM573]
 gi|258585216|gb|EEW09943.1| flagellar M-ring protein [Vibrio mimicus VM573]
          Length = 585

 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 115/497 (23%), Positives = 227/497 (45%), Gaps = 53/497 (10%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           ++D+L Q + S       R L+L++V+   +   +    + +  ++  LY + E  D+  
Sbjct: 31  LIDKLKQLWSSSQ-----RNLVLSAVLAAIVAAIIVVALWSSVQNFRPLYSQQERFDIGE 85

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L    I +R+ +    + V    V + R+ LA +G+ +    +G++   + +S G 
Sbjct: 86  IVSVLESEGISYRMQEENGQVLVQEGEVARIRMLLATKGVKAKLP-TGFDSLKEDSSLGT 144

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMI---- 177
           + FM+       LEGE+ RTI S++ +  ARVH+ +P+   F R+    P+ASV++    
Sbjct: 145 SQFMETARYRHGLEGELVRTILSLNAVTNARVHLAIPNQTLFVRQNRENPSASVLLELKP 204

Query: 178 -RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSI 233
            + + P   +  EAI +LV  +V  +    V+V+D  G+LL+A+     E  +  K L  
Sbjct: 205 GKNLKP---QQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLSADVTSAAEGEVNAKYLEY 261

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293
            + ++ +I       L   +G  NFR  V A+++    +  E + D D+ V R       
Sbjct: 262 QKNVEKQIIQRAADMLTPIVGPTNFRIQVAADMDFSQVEETEEILD-DTPVVRD------ 314

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPL--------PRSLENTDKKEE-QSNYEINTKS 344
                T Q  S   +   +P     + P+         +  +NT+ + E    Y + +  
Sbjct: 315 ---EHTIQNNSVDQIALGVPGSLSNQPPITGKAGEKQTKDSQNTNARSEVNRQYAVGSNI 371

Query: 345 IATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK--IDSYLAEINKIVSAATGINSRR 402
             T +   ++++LS++V++N         ++A  GK    +   +I+ +V  A G++  R
Sbjct: 372 RRTQYQQGQIKKLSVSVLLN--------SQAAPNGKAWTSAEKKQISTMVMDAVGVSQGR 423

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN-----ALVFLVGTLLVTFLGL 457
           GD++++ S +F    +  + T+       + +    VI      A++F V   L+  L  
Sbjct: 424 GDSLSLMSFNFTPIDIEAAPTIPWWQDPTVQQPMRYVIGGMLGIAMIFFVLRPLIMHL-T 482

Query: 458 HALRRLHNIDDAKKGEV 474
            A RR+  ++ A++ E+
Sbjct: 483 GADRRVQELEFAEQEEL 499


>gi|325926946|ref|ZP_08188226.1| flagellar basal-body M-ring protein/flagellar hook-basal body
           protein FliF [Xanthomonas perforans 91-118]
 gi|325542683|gb|EGD14145.1| flagellar basal-body M-ring protein/flagellar hook-basal body
           protein FliF [Xanthomonas perforans 91-118]
          Length = 687

 Score =  100 bits (250), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 112/212 (52%), Gaps = 2/212 (0%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
           Q+F    SL  TR L + ++I + +   +A  F+   P Y +LY  L+       +  L 
Sbjct: 19  QWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAADLLR 78

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
            A I ++I     +ISVP   +  AR+ LA  GL    +  G+EL +K   FG++ F++ 
Sbjct: 79  TAQIPYKIDQATGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQFVEN 138

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYK 186
                ALE E++RTI ++  +  ARVH+ +P   +F +     +ASV+  +R        
Sbjct: 139 ARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQGLERN 198

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
             +AI +LVA+++P++    VTV+D +G++L+
Sbjct: 199 QVDAIVNLVASSIPDMTPERVTVVDQSGRMLS 230


>gi|283955204|ref|ZP_06372705.1| flagellar M-ring protein [Campylobacter jejuni subsp. jejuni 414]
 gi|283793241|gb|EFC32009.1| flagellar M-ring protein [Campylobacter jejuni subsp. jejuni 414]
          Length = 560

 Score =  100 bits (250), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 174/369 (47%), Gaps = 33/369 (8%)

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L + NI +++ ++ + I VP   V + R+ +A++GL    S  G+E FD   +FG 
Sbjct: 68  IVAKLEQNNIPYKL-ESENKILVPQDQVYRQRMFIASEGL-IKDSRVGFEAFD-TQAFGA 124

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAI 180
           TS  Q++   RA+EGE+ARTI+++  I  A VHI  P    F +    PTASV+  +R  
Sbjct: 125 TSEEQKVKYQRAIEGELARTIETLEPIRNAVVHIAFPKDSVFTERQIPPTASVVVNVREG 184

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQH 239
                K  + I+++V+AAVP L   +V + D +G  L   E  E +++   +      + 
Sbjct: 185 LKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIKFKSDQEK 244

Query: 240 EIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
            +E  I + LA F  G+D  + +V  + +   Q+ +  +YDP+  V     L++  +++ 
Sbjct: 245 ALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLNE--EKTG 302

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEIN----TKSIATTHDNYKL 354
              PE      Q +P       P    +E  D K +   Y+ N       ++ T  N K 
Sbjct: 303 RKDPEI-----QGVPGAVSNIGP----VEGLDNKGQIDTYKKNQVTTNNELSKTITNIKK 353

Query: 355 E-----RLSIAVVVNKGRLTEVLGRSADQGK-----IDSYLAEINKIVSAATGINSRRGD 404
           +     R S AV ++ G+  +V+  + D            LA +  IV      ++ RGD
Sbjct: 354 QFATVLRTSAAVTID-GKYQDVVDENGDVKSEYVPLTKEELASVESIVKNTINFSATRGD 412

Query: 405 TITITSMDF 413
           ++ + ++ F
Sbjct: 413 SVVVQNLPF 421


>gi|170760264|ref|YP_001787983.1| flagellar MS-ring protein [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407253|gb|ACA55664.1| flagellar M-ring protein FliF [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 526

 Score =  100 bits (250), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 105/435 (24%), Positives = 198/435 (45%), Gaps = 56/435 (12%)

Query: 4   LDQLLQFFK----SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           +++L +FFK      T   + + +  + + L  I   +A   +     Y  L+  ++ +D
Sbjct: 1   MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              +   L +  ++ ++   G++I VP   V + R+ + ++ +P ++ + G+E+ DK + 
Sbjct: 61  SGTVLQKLKDKKVEAKVE--GNNILVPKDKVDELRMQMLSE-VPLTNGSQGFEILDK-SQ 116

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           FG T    +I   RAL+GE+ RTI+    +   RVH+V+P+  +F K      ASV +  
Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNTRVHLVLPEETAFVKETQPGRASVTLNL 176

Query: 180 INPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI 237
                   +  ++I  LV+ +V N+   +V V+D+   LLT     +N+   S S+ +A 
Sbjct: 177 KQGQTLSKEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLT-----KNLFDASGSLEEAT 231

Query: 238 -----QHEIEMNINK--------ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV 284
                Q +++ N  K         L +  G D  +  +  +L+ D  +   + YDP + V
Sbjct: 232 TSAEKQQQLQKNYEKDLQNRLVSMLESVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNVV 291

Query: 285 --ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINT 342
             E SI+          +   S   V+ NM +   R        E + + E   NYEI+ 
Sbjct: 292 VSEHSIKEKNQNNAGGNNTNGSV--VDNNMVN---RTTQNNNGSETSSRDENTKNYEIS- 345

Query: 343 KSIATTHDNYK----LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
               T  D+ K    ++RL+ ++V++ G + E   RSA           +  +  +A G 
Sbjct: 346 ---KTQQDSIKAPGSVKRLTASIVLD-GNIDEET-RSA-----------VRNLAVSAIGY 389

Query: 399 NSRRGDTITITSMDF 413
           + +RGDTI++  + F
Sbjct: 390 DEKRGDTISVEGLPF 404


>gi|331005448|ref|ZP_08328827.1| Flagellar M-ring protein fliF [gamma proteobacterium IMCC1989]
 gi|330420724|gb|EGG95011.1| Flagellar M-ring protein fliF [gamma proteobacterium IMCC1989]
          Length = 469

 Score =  100 bits (249), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/199 (34%), Positives = 109/199 (54%), Gaps = 6/199 (3%)

Query: 22  ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81
           IL + S+IL+ I+L   A++ +N  +Y +L+V LE  D   I   L     ++RI+    
Sbjct: 12  ILAVVSIILL-IILGFTAQWALNK-NYQSLFVGLEPKDSAAIVQQLDALKAEYRINKETG 69

Query: 82  SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
           ++ VPSS V   R+ L    + + S   GYE+FD  + FG+T F Q I   RALEGE+ R
Sbjct: 70  NVEVPSSQVHSTRLQLMGTDV-TISGGVGYEIFDN-SDFGMTEFAQRINYQRALEGELQR 127

Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASV--MIRAINPSVYKSAEAIRHLVAAAV 199
           TI S+S +  +RVH+V+P+   FR+   +P+ASV  +++            I+ LV+++V
Sbjct: 128 TITSLSQVKKSRVHLVLPERSLFRENKEQPSASVTLIVKKGMSLTGTQISGIQRLVSSSV 187

Query: 200 PNLDMGDVTVLDSTGKLLT 218
             L    V + D  G  L+
Sbjct: 188 SGLKEPMVIINDQQGVTLS 206


>gi|307293804|ref|ZP_07573648.1| flagellar M-ring protein FliF [Sphingobium chlorophenolicum L-1]
 gi|306879955|gb|EFN11172.1| flagellar M-ring protein FliF [Sphingobium chlorophenolicum L-1]
          Length = 587

 Score =  100 bits (249), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 106/429 (24%), Positives = 202/429 (47%), Gaps = 47/429 (10%)

Query: 38  AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97
           AA   +  P   +L+  L  +D + ++  L ++ I +   DN   ++V      KA++ L
Sbjct: 68  AAWLALREPPQRDLFRALPDADKSAVAQVLDQSGIRYDF-DNSGGMTVGEDDYFKAKMML 126

Query: 98  AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
           AAQGLP S+ + G  + D +   G +  ++      A E ++ARTI++I  + +A+VH+ 
Sbjct: 127 AAQGLPKSAPD-GNSMIDSL-PMGASRAVEGEKLRSAREMDLARTIEAIDSVESAKVHLA 184

Query: 158 MPDMGSFRKIGARPTASVMIR-AINPSVY-KSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
           +     F +  ++P+ASVM+R A   S+  +   AI HLVA+++P L+  D++V+D  G+
Sbjct: 185 VEPPSVFLRERSKPSASVMLRLASGRSLTDQQVSAIVHLVASSIPELNPEDISVVDQNGR 244

Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LL+ N+       + L++   ++     ++   L   LG   F + V AELN   +Q   
Sbjct: 245 LLSNNDGN-AADDRQLAVQTKMEDRYRQSVIALLTPILGAGKFSTEVHAELNFAERQATR 303

Query: 276 IVYDPDSKVERSIRLSKDAQRSE-----------------TSQPESAVTVEQNMPH---- 314
             Y  D   E  +R    + +S+                 ++Q     TV Q  P+    
Sbjct: 304 ETYPQD---EARLRTETGSWQSDPRGQGAGGEASGIPGALSNQAPVNPTVTQTNPNGQAV 360

Query: 315 ----VSDRKVPLPRSLENTDKKEEQS---NYEINTKSIATTHDNY-KLERLSIAVVVNKG 366
                S +    P +  N   K E++   ++E+  + ++ T D    ++RLS+AV ++ G
Sbjct: 361 AQGTQSAQTAAQPGTPGNPLMKTEETFNRSFELG-REVSVTKDAIGTVKRLSVAVALDNG 419

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
              +   R+A +      +A +  +V  A G +  RGD + ++S  F + ++  +   + 
Sbjct: 420 --ADGKPRTAQE------IAALEALVKGAVGFDQARGDVVALSSRSFAKEEVVEAPWYEA 471

Query: 427 SFMDILSRH 435
            ++  L R+
Sbjct: 472 EWVSPLVRN 480


>gi|32266110|ref|NP_860142.1| flagellar MS-ring protein [Helicobacter hepaticus ATCC 51449]
 gi|32262159|gb|AAP77208.1| flagellar basal body M-ring protein FliF [Helicobacter hepaticus
           ATCC 51449]
          Length = 570

 Score =  100 bits (249), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 120/466 (25%), Positives = 221/466 (47%), Gaps = 47/466 (10%)

Query: 19  RTRILILAS-VILVPIMLFMAARFFVNSPHYDN---LYVKLEVSDVNRISVALSEANIDF 74
           + RI+IL + V+L+  + ++          Y+N   L+  L   D   I   L +  I +
Sbjct: 20  KQRIIILTTFVVLISFLTYLVLFKVETKNEYENYEVLFSNLSAEDSALILQKLQQDKIPY 79

Query: 75  RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134
           +I  + + I VP   V + RI L + GLP +S N G+++  + +  G T F Q++  + A
Sbjct: 80  KIPQD-NIIMVPKDNVYEQRITLGSLGLPKTSKNVGFDILLE-SPVGETPFTQDMKYLIA 137

Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AI 191
            + E+ARTI+S+  I  A V+I MP    F + G  P+ASV +  +  +++ S E    +
Sbjct: 138 KQNELARTIESLRPIEKAIVNISMPKESLFVQGGHPPSASVKL-TVRDNMFLSTEQVIGV 196

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSI----VQAIQHEIEMNI 245
           +HLVAAAV  L   +V +++  G+LL   +    + +L K  +      QA ++ +E  I
Sbjct: 197 KHLVAAAVERLTPENVKIINQEGELLGEEDEAALQGVLAKKAAFQRRYQQAAENAMEAKI 256

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305
            K L   +G D  ++ V  + +   +   +  +D  + V R IR   + +R     P+  
Sbjct: 257 IKFLQPSVG-DGVQAQVTMDYDFSVRNSTQEEFD-QNPVIRGIR-EYEKERKGFRPPQIG 313

Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINT-----KSIATTHDNYK-LERLSI 359
                 +P V     P+ + L++ +  E +   E+       K +++  ++Y  L+R+S 
Sbjct: 314 -----GVPGVVSNIGPV-QGLKDDEMMEWEKESEVVQNNEIGKKVSSISEHYGVLKRVSA 367

Query: 360 AVVVNKGRLTEVLGRSAD---------QGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
           +V+++ G   EV+G   +         Q  +D +L  + K    A G N  RGD + + +
Sbjct: 368 SVMID-GTYEEVVGEDGETRLEYSPRSQEDMDKFLEGVKK----AIGYNEARGDQVEVIN 422

Query: 411 MDFLENQL-FNSGTVQVSFMDILSRHFATVINALVF-LVGTLLVTF 454
           M F   QL +       +F D + R+ +  +  L + +V  +L+ F
Sbjct: 423 MPFRNTQLDYRPKDAWEAFSDKVERYLSPFMPLLKYVIVAVILLVF 468


>gi|295706285|ref|YP_003599360.1| flagellar M-ring protein FliF [Bacillus megaterium DSM 319]
 gi|294803944|gb|ADF41010.1| flagellar M-ring protein FliF [Bacillus megaterium DSM 319]
          Length = 530

 Score =  100 bits (249), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 93/356 (26%), Positives = 168/356 (47%), Gaps = 27/356 (7%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92
           +++   A  F+N   +  LY  L   +  +I   L   ++   ISDNG++ISVP   V  
Sbjct: 35  VLVISLASVFLNQDKFVPLYSNLSAQETGQIKAELDARSVPSEISDNGTTISVPEQSVDS 94

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
            ++ LAAQG+P S S   Y  F K  SFG+T     + ++ A++ E+A  +++I G+  A
Sbjct: 95  LKVDLAAQGIPDSGS-IDYSFFGKNASFGMTDNEFNVLKLDAMQTELANLMKNIQGVNDA 153

Query: 153 RVHIVMPDMGSF-RKIGARPTASVMIRAINPSVYK----SAEAIRHLVAAAVPNLDMGDV 207
           +V I +P+   +  +     +AS+++     + YK      +++ HLV+ +VPNL   ++
Sbjct: 154 KVMITLPNESVWANEKQGEASASIVLNT--KAGYKFDDQQIKSLYHLVSKSVPNLPTDNI 211

Query: 208 TVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKA----LAAFLGVDNFRSAVV 263
            +++   +       E N    S +     + E+E +I +     L   +G D    +V 
Sbjct: 212 VIMNQYFEYFDLKGNETNSASSSFASQNEAKKEVERDIQRQVQQMLGRLVGQDKVMVSVT 271

Query: 264 AELNMDTQQIREIVYDP-DSKVERSIRLSKDAQRSETSQPESAV------TVEQNMPHVS 316
           A+L+   +   E + +P D    + I +S + + +ET   E+A       T E++  + S
Sbjct: 272 ADLDFTQENREEKLVEPVDKDNMQGIAVSAE-KINETFSGENAQDGGVAGTGEEDTTNYS 330

Query: 317 DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN----KGRL 368
                     E   K EE+ NYE+N          YK++ L I V+++    KG+L
Sbjct: 331 SSTTSGDGDYE---KNEERINYEVNRIHKEIVESPYKIQDLGIQVMIDPSNAKGKL 383


>gi|332981431|ref|YP_004462872.1| flagellar M-ring protein FliF [Mahella australiensis 50-1 BON]
 gi|332699109|gb|AEE96050.1| flagellar M-ring protein FliF [Mahella australiensis 50-1 BON]
          Length = 533

 Score =  100 bits (249), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 166/347 (47%), Gaps = 26/347 (7%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
            Y  LY  L++ +   I+  L E  + +R +  G++I VP     K R+ LA QG+P + 
Sbjct: 51  QYTVLYSGLDIKEAGEITQKLDEMGVPWRTAAGGTAIEVPKGQDAKIRMQLATQGIPKTG 110

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-R 165
            N  Y+LF + ++FG T + ++   +   +  +  +I +I G+  A V+I +P+  SF  
Sbjct: 111 GN--YDLFMQSSAFGTTDYKEQKLYIFQQQERLQESIMTIQGVDQAVVNISVPEKDSFVL 168

Query: 166 KIGARP-TASVMIRAINPSV-YKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE 221
           K   +P TASV+++ ++P V  KSA+   I+ LVA +V  L   +VTV+D    +L+  +
Sbjct: 169 KNDVQPATASVLLK-LSPGVEMKSAQVSGIQQLVAKSVIGLKSENVTVIDDKANILSVEQ 227

Query: 222 MERNI--LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
            E +I    + + + + +Q E++  + + L    G       V  +L+ D +    I + 
Sbjct: 228 KEDDIRTADQQVDLEKKVQDELQQKLLQLLEPIFGPKKVVVGVGVQLDFDKRSSESIQWQ 287

Query: 280 P---DSKVERSIRLSKD------AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD 330
           P   D  +  S++  K+      A     +    A T  Q  P V D     P     T+
Sbjct: 288 PVLDDEGIAVSMQTIKESMINMPAGEVPGTANNGADTGGQGPPPVEDDTGNNPDGYPGTN 347

Query: 331 K------KEEQS-NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTE 370
           +      KEE + NYE+N           KL+ ++I+VVV+   ++E
Sbjct: 348 QGNSEYNKEENTINYEVNQLKQQVEEAQGKLKSMTISVVVDGENISE 394


>gi|262273540|ref|ZP_06051354.1| flagellar M-ring protein FliF [Grimontia hollisae CIP 101886]
 gi|262222518|gb|EEY73829.1| flagellar M-ring protein FliF [Grimontia hollisae CIP 101886]
          Length = 548

 Score =  100 bits (248), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 103/380 (27%), Positives = 172/380 (45%), Gaps = 45/380 (11%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
            Y  LY + E  D N++  AL +   D+ +     +I V  S V  ARI +AA G+ +  
Sbjct: 51  EYRPLYGEQEQYDRNQVIAALEQNRFDYYVEPQKGNIMVERSQVAAARIAMAAAGIEAKV 110

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             +G E+ +K  + G + F++       LEGE+AR+I ++ G+  ARVH+ +P    F  
Sbjct: 111 P-AGLEILNKDFALGTSQFIENARYRHGLEGELARSIMTLDGVSNARVHLALPKQTLF-- 167

Query: 167 IGAR---PTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE 221
           +G     P+ASV++      V  S    AI +LVA +VP+L    V V+D  G LL+ N+
Sbjct: 168 VGRNKELPSASVVVVLTPGRVLHSDNIAAIVNLVAGSVPDLQADRVNVIDQHGNLLS-NQ 226

Query: 222 MERNI----LGKS--LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           + +      LG S  LS  Q ++ E   +  K L   +GV+NF+  V A +N D  +  E
Sbjct: 227 IGQGTGIGELGNSQYLSYTQKLEAEYIESAAKMLRPMVGVNNFQVEVAASVNFDRVEATE 286

Query: 276 IVYDPDSKVERSI-RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD---- 330
             Y P   V         + Q+    +PE     + N          LP   E+ D    
Sbjct: 287 ESYGPKGTVRNEFSSFDNEGQK----EPEGVPGTQSNR---------LPEGKEDGDGTLV 333

Query: 331 --KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
             + E   +Y ++       +    +ERL+++V++N             +   D+    I
Sbjct: 334 NKRGESSKDYAVDRTLKHIKYQQGSVERLTVSVLLN----------GEAESFSDAQRENI 383

Query: 389 NKIVSAATGINSRRGDTITI 408
             ++  A G++  RGD +++
Sbjct: 384 RTMLIDALGLDEARGDKLSL 403


>gi|262173382|ref|ZP_06041059.1| flagellar M-ring protein FliF [Vibrio mimicus MB-451]
 gi|261890740|gb|EEY36727.1| flagellar M-ring protein FliF [Vibrio mimicus MB-451]
          Length = 585

 Score =  100 bits (248), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 107/453 (23%), Positives = 207/453 (45%), Gaps = 48/453 (10%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
           ++  LY + E  D+  I   L    I +R+ +    + V    V + R+ LA +G+ +  
Sbjct: 70  NFRPLYSQQERFDIGEIVSVLESEGISYRMQEENGQVLVQEGEVARIRMLLATKGVKAKL 129

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-R 165
             +G++   + +S G + FM+       LEGE+ RTI S++ +  ARVH+ +P+   F R
Sbjct: 130 P-TGFDSLKEDSSLGTSQFMETARYRHGLEGELVRTILSLNAVTNARVHLAIPNQTLFVR 188

Query: 166 KIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN 220
           +    P+ASV++     + + P   +  EAI +LV  +V  +    V+V+D  G+LL+A+
Sbjct: 189 QNRENPSASVLLELKPGKNLKP---QQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLSAD 245

Query: 221 ---EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
                E  +  K L   + ++ +I       L   +G  NFR  V A+++    +  E +
Sbjct: 246 VTSAAEGKVNAKYLEYQKNVEKQIIQRAADMLTPIVGPTNFRIQVAADMDFSQVEETEEI 305

Query: 278 YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPL--------PRSLENT 329
            D D+ V R            T Q  S   +   +P     + P+         +  +NT
Sbjct: 306 LD-DTPVVRD---------EHTIQNNSVDQIALGVPGSLSNQPPITGKAGEKQTKDSQNT 355

Query: 330 DKKEE-QSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK--IDSYLA 386
           + + E    Y + +    T +   ++++LS++V++N         ++A  GK    +   
Sbjct: 356 NARSEVNRQYAVGSNIRRTQYQQGQIKKLSVSVLLN--------SQAAPNGKAWTSAEKK 407

Query: 387 EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN----- 441
           +I+ +V  A G++  RGD++++ S +F    +  + T+       + +    VI      
Sbjct: 408 QISTMVMDAVGVSQGRGDSLSLMSFNFTPIDIEAAPTIPWWQDPTVQQPMRYVIGGMLGI 467

Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
           A++F V   L+  L   A RR+  ++ A++ E+
Sbjct: 468 AMIFFVLRPLIMHL-TGADRRVQELEFAEQEEL 499


>gi|294013069|ref|YP_003546529.1| flagellar M-ring protein FliF [Sphingobium japonicum UT26S]
 gi|292676399|dbj|BAI97917.1| flagellar M-ring protein FliF [Sphingobium japonicum UT26S]
          Length = 583

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 106/426 (24%), Positives = 199/426 (46%), Gaps = 41/426 (9%)

Query: 38  AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97
           AA   +  P   +L+  L  +D + ++  L +  I +   DN   ++V      KA++ L
Sbjct: 64  AAWLALREPPQRDLFRALPDADKSAVAQVLDQNGIRYDF-DNSGGMTVGEDEYFKAKMML 122

Query: 98  AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
           AAQGLP S+ + G  + D +   G +  ++      A E ++ARTI++I  + +A+VH+ 
Sbjct: 123 AAQGLPKSAPD-GNSMIDSL-PMGASRAVEGEKLRSAREMDLARTIEAIDSVESAKVHLA 180

Query: 158 MPDMGSFRKIGARPTASVMIR-AINPSVY-KSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
           +     F +  ++P+ASVM+R A   S+  +   AI HLVA+++P L+  D++++D  G+
Sbjct: 181 VEPPSVFLRERSKPSASVMLRLASGRSLTDQQVSAIVHLVASSIPELNPEDISLVDQNGR 240

Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LL+ N+       + L++   ++     ++   L   LG   F + V AELN   +Q   
Sbjct: 241 LLSNNDGN-AADDRQLAVQTRMEDRYRQSVIALLTPILGAGKFSTEVHAELNFAERQATR 299

Query: 276 IVYDPDSKVERSIR--LSKDAQRSETSQPESAV------------TVEQNMPH------- 314
             Y  D    RS +   + D +        S +            TV Q  P+       
Sbjct: 300 ETYPQDEARLRSEQGTWASDPRGQGAGGEASGIPGALSNQAPVNPTVTQTNPNGQAVAQG 359

Query: 315 -VSDRKVPLPRSLENTDKKEEQS---NYEINTKSIATTHDNY-KLERLSIAVVVNKGRLT 369
             S +    P +  N   K E++   ++E+  + ++ T D    ++RLS+AV ++ G   
Sbjct: 360 TESAQTAAQPGTPGNPLMKTEETFNRSFELG-REVSVTKDAVGTVKRLSVAVALDNG--P 416

Query: 370 EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFM 429
           +   RSA +      +A +  +V  A G +  RGD + ++S  F + ++  +   +  ++
Sbjct: 417 DGKPRSAQE------IAALEALVKGAVGFDQARGDVVALSSRSFAKEEVVEAPWYEAQWV 470

Query: 430 DILSRH 435
             L R+
Sbjct: 471 SPLVRN 476


>gi|261419419|ref|YP_003253101.1| flagellar MS-ring protein [Geobacillus sp. Y412MC61]
 gi|319766234|ref|YP_004131735.1| flagellar M-ring protein FliF [Geobacillus sp. Y412MC52]
 gi|261375876|gb|ACX78619.1| flagellar M-ring protein FliF [Geobacillus sp. Y412MC61]
 gi|317111100|gb|ADU93592.1| flagellar M-ring protein FliF [Geobacillus sp. Y412MC52]
          Length = 528

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 149/338 (44%), Gaps = 21/338 (6%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           FF        LY  L   +  +I   L +  +   ++D G++I VP   V   ++ LAA+
Sbjct: 43  FFATRTEMVPLYSNLSPQEAGQIKATLDQRGVPAEVADGGTTIKVPKEQVDALKVELAAE 102

Query: 101 GLPSSSSNSG---YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
           G+P    NSG   Y  F +  SFG+T     + +++A++ E+A  I++I G+  A+V I 
Sbjct: 103 GIP----NSGVIDYSFFGQNASFGMTDNEFNMVKLKAMQTELANLIKTIDGVEDAKVMIN 158

Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTG 214
           +P    F        ++ ++    P    S E I+   HLVA +VPNL   ++ +++   
Sbjct: 159 LPQPSVFVSDEKGEASASIVLKTKPGYQFSDEQIKALYHLVAKSVPNLSTDNIVIMNQFF 218

Query: 215 KLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD---TQ 271
           +         N  G + +  Q I+ +IE +I + +   LG    +  VV  +  D   TQ
Sbjct: 219 EYYDLKNDGENSTGTTFASQQQIKKQIERDIQRQVQQLLGTMMGQDKVVVSVTADVDFTQ 278

Query: 272 QIRE--IVYDPDSKVERSIRLS----KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRS 325
           + RE  +V   D K ++ I +S    K+      + P  A     N   V   +     +
Sbjct: 279 EKREENLVSPVDEKTKQGIAVSVQRIKETYSGSGAPPGGAAGTGAN--EVPGYQNANGAT 336

Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
             N ++ EE  N E+N          YK+  L I V+V
Sbjct: 337 NGNYERTEETINNEVNKIKKQIVESPYKIRDLGIQVMV 374


>gi|56419754|ref|YP_147072.1| flagellar MS-ring protein [Geobacillus kaustophilus HTA426]
 gi|56379596|dbj|BAD75504.1| flagellar basal-body M-ring protein [Geobacillus kaustophilus
           HTA426]
          Length = 528

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 149/338 (44%), Gaps = 21/338 (6%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           FF        LY  L   +  +I   L +  +   ++D G++I VP   V   ++ LAA+
Sbjct: 43  FFATRTEMVPLYSNLSPQEAGQIKATLDQRGVPAEVADGGTTIKVPKEQVDALKVELAAE 102

Query: 101 GLPSSSSNSG---YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
           G+P    NSG   Y  F +  SFG+T     + +++A++ E+A  I++I G+  A+V I 
Sbjct: 103 GIP----NSGVIDYSFFGQNASFGMTDNEFNMVKLKAMQTELANLIKTIDGVEDAKVMIN 158

Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTG 214
           +P    F        ++ ++    P    S E I+   HLVA +VPNL   ++ +++   
Sbjct: 159 LPQPSVFVSDEKGEASASIVLKTKPGYQFSDEQIKALYHLVAKSVPNLSTDNIVIMNQFF 218

Query: 215 KLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD---TQ 271
           +         N  G + +  Q I+ +IE +I + +   LG    +  VV  +  D   TQ
Sbjct: 219 EYYDLKNDGENSTGTTFASQQQIKKQIERDIQRQVQQLLGTMMGQDKVVVSVTADVDFTQ 278

Query: 272 QIRE--IVYDPDSKVERSIRLS----KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRS 325
           + RE  +V   D K ++ I +S    K+      + P  A     N   V   +     +
Sbjct: 279 EKREENLVSPVDEKTKQGIAVSVQRIKETYSGSGAPPGGAAGTGAN--EVPGYQNANGAT 336

Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
             N ++ EE  N E+N          YK+  L I V+V
Sbjct: 337 NGNYERTEETINNEVNKIKKQIVESPYKIRDLGIQVMV 374


>gi|297530606|ref|YP_003671881.1| flagellar M-ring protein FliF [Geobacillus sp. C56-T3]
 gi|297253858|gb|ADI27304.1| flagellar M-ring protein FliF [Geobacillus sp. C56-T3]
          Length = 528

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 149/338 (44%), Gaps = 21/338 (6%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           FF        LY  L   +  +I   L +  +   ++D G++I VP   V   ++ LAA+
Sbjct: 43  FFATRTEMVPLYSNLSPQEAGQIKATLDQRGVPAEVADGGTTIKVPKEQVDALKVELAAE 102

Query: 101 GLPSSSSNSG---YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
           G+P    NSG   Y  F +  SFG+T     + +++A++ E+A  I++I G+  A+V I 
Sbjct: 103 GIP----NSGVIDYSFFGQNASFGMTDNEFNMVKLKAMQTELANLIKTIDGVEDAKVMIN 158

Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTG 214
           +P    F        ++ ++    P    S E I+   HLVA +VPNL   ++ +++   
Sbjct: 159 LPQPSVFVSDEKGEASASIVLKTKPGYQFSDEQIKALYHLVAKSVPNLSTDNIVIMNQFF 218

Query: 215 KLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD---TQ 271
           +         N  G + +  Q I+ +IE +I + +   LG    +  VV  +  D   TQ
Sbjct: 219 EYYDLKNDGENSTGTTFASQQQIKKQIERDIQRQVQQLLGTMMGQDKVVVSVTADVDFTQ 278

Query: 272 QIRE--IVYDPDSKVERSIRLS----KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRS 325
           + RE  +V   D K ++ I +S    K+      + P  A     N   V   +     +
Sbjct: 279 EKREENLVSPVDEKTKQGIAVSVQRIKETYSGSGAPPGGAAGTGAN--EVPGYQNANGAT 336

Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
             N ++ EE  N E+N          YK+  L I V+V
Sbjct: 337 NGNYERTEETINNEVNKIKKQIVESPYKIRDLGIQVMV 374


>gi|255594469|ref|XP_002536098.1| Flagellar M-ring protein, putative [Ricinus communis]
 gi|223520885|gb|EEF26286.1| Flagellar M-ring protein, putative [Ricinus communis]
          Length = 263

 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 141/269 (52%), Gaps = 13/269 (4%)

Query: 22  ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81
           +L+LA  I   +ML+M        P +   + K+  SD+  +   L   ++ +RI  +  
Sbjct: 1   MLVLAIGITAAVMLYMWNDQAGYKPVF-GAHEKVAASDMMSV---LDAEHVPYRIHPDSG 56

Query: 82  SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
            + VP+  +GK R+ LAA+G+ ++   +G EL DK +  G++ F+Q++   R LEGE+A+
Sbjct: 57  QVMVPTGQLGKVRMLLAAKGV-TAQLPAGLELMDKNDPLGVSQFVQDVRFRRGLEGELAQ 115

Query: 142 TIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINPSVYKSAE---AIRHLVAA 197
           +I ++  I +ARVH+ +    SF    G + +ASV++ A+ P    S E   AI ++V+ 
Sbjct: 116 SILTLDAIASARVHLAIAKSSSFVANDGDKSSASVVV-AVKPGRTLSNEQIAAIVNMVSG 174

Query: 198 AVPNLDMGDVTVLDSTGKLLTAN-EMERNI--LGKSLSIVQAIQHEIEMNINKALAAFLG 254
           +V  L    V+++D  G  L++  ++        +  +  +  Q E+  N+   L   LG
Sbjct: 175 SVAGLAPARVSLVDQNGNYLSSRVDLTEGFDGAAQGDAAAKRYQDEVRTNVAGLLGPVLG 234

Query: 255 VDNFRSAVVAELNMDTQQIREIVYDPDSK 283
            DNF+ +V A+++ D  +  +  Y  D K
Sbjct: 235 ADNFKVSVTADVDNDKVEETQEKYGADPK 263


>gi|222099438|ref|YP_002534006.1| Flagellar M-ring protein [Thermotoga neapolitana DSM 4359]
 gi|221571828|gb|ACM22640.1| Flagellar M-ring protein [Thermotoga neapolitana DSM 4359]
          Length = 537

 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 103/391 (26%), Positives = 188/391 (48%), Gaps = 44/391 (11%)

Query: 1   MAILDQLLQFFKS----GTSLGRTRILI---LASVILVPIMLFMAARFFVNSPHYDNLYV 53
           M + +Q+   +K       S+ R R  +   +A+ +++ I+LF        +PHY  L  
Sbjct: 5   MNLFEQIKNLWKKIFDLWNSMPRERRFLVGGIAAALIISIVLFA---IIAATPHYRLLVA 61

Query: 54  KLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYEL 113
            L   +   I   L E NI +++S  G         V + R+ LA++G+    +  G+ +
Sbjct: 62  GLSEEEAGTIIQKLEEMNIPYKVSPGGDIYVSDKYNVYELRMKLASEGI-LGGTRQGFSI 120

Query: 114 FDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPT 172
             + NSFG TSF +++    AL+ E+ R+I +I G+  ARVH+V+P    + R   A P 
Sbjct: 121 LSE-NSFGATSFDKQVKYQIALQQELERSIMTIRGVKDARVHLVLPKYTYYVRGEMAEPR 179

Query: 173 ASVMIRAINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNI 226
           ASV++  + P    + E +R    LV+ AV  L   +V V+D+  + L+    ++ E  +
Sbjct: 180 ASVLV-VLEPGAELTREQVRGIVELVSGAVEGLKPENVRVVDNYSRSLSDMLESDEETFL 238

Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV--YDPDSKV 284
               L + Q ++   E  + KAL +  G    R  V+ +++++  +I   +  Y+  ++ 
Sbjct: 239 ASSKLELKQQLEKYYENKLKKALESVFGPG--RVEVIPDVSLNWTKIETEMKRYEAPARR 296

Query: 285 ERSIRLSKDAQRSETSQPES------AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ--- 335
           E  +R    +Q +ET + ++       V  E N+P +S   V    S E T   E     
Sbjct: 297 EGLVR----SQETETERSQNLPVSGGEVGTESNIPPLSYPSV----SGEGTSTYERTHTI 348

Query: 336 SNYEINT--KSIATTHDNYKLERLSIAVVVN 364
           +NYE+N   + I   H+  ++  LS+AV+++
Sbjct: 349 TNYELNEIYQKILQNHEG-EISSLSVAVIID 378


>gi|258624661|ref|ZP_05719596.1| flagellar M-ring protein [Vibrio mimicus VM603]
 gi|258583053|gb|EEW07867.1| flagellar M-ring protein [Vibrio mimicus VM603]
          Length = 585

 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 114/497 (22%), Positives = 226/497 (45%), Gaps = 53/497 (10%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           ++D+L Q + S       R L+L++V+   +   +    + +  ++  LY + E  D+  
Sbjct: 31  LIDKLKQLWSSSQ-----RNLVLSAVLAAIVAAIIVVALWSSVQNFRPLYSQQERFDIGE 85

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L    I +R+ +    + V    V + R+ LA +G+ +    +G++   + +S G 
Sbjct: 86  IVSVLESEGISYRMQEENGQVLVQEGEVARIRMLLATKGVKAKLP-TGFDSLKEDSSLGT 144

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMI---- 177
           + FM+       LEGE+ RTI S++ +  ARVH+ +P+   F R+    P+ASV++    
Sbjct: 145 SQFMETARYRHGLEGELVRTILSLNAVTNARVHLAIPNQTLFVRQNRENPSASVLLELKP 204

Query: 178 -RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSI 233
            + + P   +  EAI +LV  +V  +    V+V+D  G+LL+A+     E  +  K L  
Sbjct: 205 GKNLKP---QQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLSADVTSAAEGKVNAKYLEY 261

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293
            + ++ +I       L   +   NFR  V A+++    +  E + D D+ V R       
Sbjct: 262 QKNVEKQIIQRAADMLTPIVSPTNFRIQVAADMDFSQVEETEEILD-DTPVVRD------ 314

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPL--------PRSLENTDKKEE-QSNYEINTKS 344
                T Q  S   +   +P     + P+         +  +NT+ + E    Y + +  
Sbjct: 315 ---EHTIQNNSVDQIALGVPGSLSNQPPITGKAGEKQTKDSQNTNARSEVNRQYAVGSNI 371

Query: 345 IATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK--IDSYLAEINKIVSAATGINSRR 402
             T +   ++++LS++V++N         ++A  GK    +   +I+ +V  A G++  R
Sbjct: 372 RRTQYQQGQIKKLSVSVLLN--------SQAAPNGKAWTSAEKKQISTMVMDAVGVSQGR 423

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN-----ALVFLVGTLLVTFLGL 457
           GD++++ S +F    +  + T+       + +    VI      A++F V   L+  L  
Sbjct: 424 GDSLSLMSFNFTPIDIEAAPTIPWWQDPTVQQPMRYVIGGMLGIAMIFFVLRPLIMHL-T 482

Query: 458 HALRRLHNIDDAKKGEV 474
            A RR+  ++ A++ E+
Sbjct: 483 GADRRVQELEFAEQEEL 499


>gi|257140592|ref|ZP_05588854.1| flagellar MS-ring protein [Burkholderia thailandensis E264]
          Length = 592

 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 82/136 (60%), Gaps = 2/136 (1%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 78  WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 137

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++S++ + AARVH+ +P  
Sbjct: 138 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESVNAVRAARVHLAIPKP 195

Query: 162 GSFRKIGARPTASVMI 177
             F +    P+ASV++
Sbjct: 196 SVFVRDREAPSASVLV 211


>gi|323174686|gb|EFZ60306.1| flagellar M-ring protein domain protein [Escherichia coli LT-68]
          Length = 173

 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/153 (36%), Positives = 86/153 (56%), Gaps = 4/153 (2%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +M+  A   +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
           I++I  +  ARVH+ MP    F +    P+ASV
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASV 173


>gi|294500939|ref|YP_003564639.1| flagellar M-ring protein FliF [Bacillus megaterium QM B1551]
 gi|294350876|gb|ADE71205.1| flagellar M-ring protein FliF [Bacillus megaterium QM B1551]
          Length = 530

 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 124/246 (50%), Gaps = 13/246 (5%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
           A  F+N   +  LY  L   +  +I   L   ++   ISDNG++ISVP   V   ++ LA
Sbjct: 41  ASVFLNQDKFVPLYSNLSAQETGQIKAELDARSVPSEISDNGTTISVPEQSVDSLKVDLA 100

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
           AQG+P S S   Y  F K  SFG+T    ++ ++ A++ E+A  +++I G+  A+V I +
Sbjct: 101 AQGIPDSGS-IDYSFFGKNASFGMTDNEFDVLKLDAMQTELANLMKNIQGVNDAKVMITL 159

Query: 159 PDMGSF-RKIGARPTASVMIRAINPSVYK----SAEAIRHLVAAAVPNLDMGDVTVLDST 213
           P+   +  +     +AS+++     + YK      +++ HLV+ +VPNL   ++ +++  
Sbjct: 160 PNESVWANEKQGEASASIVLNT--KAGYKFDDQQIKSLYHLVSKSVPNLPTDNIVIMNQY 217

Query: 214 GKLLTANEMERNILGKSLSIVQAIQHEIEMNINKA----LAAFLGVDNFRSAVVAELNMD 269
            +       E N    S +    ++ E+E +I +     L   +G D    +V A+L+  
Sbjct: 218 FEYFDLKGNETNSASSSFASQNEVKKEVERDIQRQVQQMLGRLVGQDKVMVSVTADLDF- 276

Query: 270 TQQIRE 275
           TQ+ RE
Sbjct: 277 TQENRE 282


>gi|149201593|ref|ZP_01878567.1| Flagellar FliF M-ring protein [Roseovarius sp. TM1035]
 gi|149144641|gb|EDM32670.1| Flagellar FliF M-ring protein [Roseovarius sp. TM1035]
          Length = 564

 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 126/520 (24%), Positives = 220/520 (42%), Gaps = 67/520 (12%)

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
           AL+ A +D R+  +  +++V +     AR+ LA QGLP  +++ G    D++   G TS 
Sbjct: 83  ALTAAGMDARLDPSSGALTVAADQFHSARMLLATQGLPEGATD-GMSAIDEM-PMG-TSR 139

Query: 126 MQEITRVRAL-EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
             E  R+R + E ++AR+IQ +  + AARVH+ +P+  +F +    P ASV +       
Sbjct: 140 QIESARLRRMQELDLARSIQELRPVRAARVHLALPERSAFVRDSQPPRASVFLELAPGMA 199

Query: 185 YKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242
              A+  AI  LVAAAVP++  G+V+V+D TG LLT+ E E  +  ++    + +QH+  
Sbjct: 200 LDQAQVRAIVSLVAAAVPDMPRGNVSVVDQTGTLLTSPE-EDPVQSEA---DRQMQHQRR 255

Query: 243 MN------INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           +       +   L   +G  N    V  +++    +I    Y PD+ +      S+    
Sbjct: 256 LETLYRDRVLSLLTPIVGAGNAAVEVTLDMDFTRSEITSEEYLPDTALRSEQSSSQQTSG 315

Query: 297 SETSQ-PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEIN---------TKSIA 346
           ++    P +      N   +++      +S           NYE++         T  I 
Sbjct: 316 AQAGGIPGAVANTPPNEAQMAEAATQGAKSGTTNSATSSTRNYEVSRRVETRQPQTAQIN 375

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
             H    L RL       +G  T     +         LAEI  +  +A G N+ RGD +
Sbjct: 376 RVHAAVLLHRLPTPAAPAEGEATSAAPEAVP-------LAEIEALTRSAIGYNAERGDIV 428

Query: 407 TITSMDFLENQLFNSGT--VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
           T+ S  F+      S       +++  L R  A +      L G ++     L  +R + 
Sbjct: 429 TVASAPFVVAPSVISAERWYDAAWLPTLGRTLAQLA-----LFGIIV-----LGVVRPIL 478

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNI------ALDSSNQDIFSHSRNLQSR 518
           N             +L  PP+ +  TTG+   D I      +L +  Q + + + N +  
Sbjct: 479 N------------RLL--PPVGATATTGMTYGDAIEVPRGESLSALRQRLETAAPNAED- 523

Query: 519 INSYVSKQSDLRLLHMIEINE-ERFAKILRKWARSEIEDR 557
           +N  ++ +  + LL  +  +E  R A + +       EDR
Sbjct: 524 LNGAITYEEKIDLLRQMAGSETNRIAGVFKSMITPTGEDR 563


>gi|148269839|ref|YP_001244299.1| flagellar M-ring protein FliF [Thermotoga petrophila RKU-1]
 gi|281412278|ref|YP_003346357.1| flagellar M-ring protein FliF [Thermotoga naphthophila RKU-10]
 gi|147735383|gb|ABQ46723.1| flagellar M-ring protein FliF [Thermotoga petrophila RKU-1]
 gi|281373381|gb|ADA66943.1| flagellar M-ring protein FliF [Thermotoga naphthophila RKU-10]
          Length = 532

 Score = 97.4 bits (241), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 119/429 (27%), Positives = 203/429 (47%), Gaps = 56/429 (13%)

Query: 1   MAILDQLLQFFKS----GTSLGRTRILILASV---ILVPIMLFMAARFFVNSPHYDNLYV 53
           M I+++L   +K       S+ R R  ++  +   +++ I+LF       + PHY  L  
Sbjct: 1   MNIVERLRDLWKKIVELWNSMSRERKFLVGGIGIALVITIVLFAVV---ASVPHYRLLVA 57

Query: 54  KLEVSDVNRISVALSEANIDFRISDNGSSISVPSSM-VGKARIHLAAQGLPSSSSNSGYE 112
            L   +   I   L E NI +++S  G  I VP S  V + R+ LA++G+   SS  G+ 
Sbjct: 58  GLNEDEAGVIIQKLEEMNIPYKVSPGGD-IYVPDSYNVYELRMKLASEGV-LGSSRKGFS 115

Query: 113 LFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARP 171
           + ++ NSFG TSF +++    AL+ E+ R+I +I G+  ARVH+V+P    + R   A P
Sbjct: 116 ILNE-NSFGATSFDKQVKYQIALQEELERSIMTIKGVKDARVHLVLPKYTYYVRGEMAEP 174

Query: 172 TASVMIRAINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNI 226
            ASV++  + P    + E +R    LV+ AV  L   +V V+D+  + L+      E   
Sbjct: 175 RASVLV-VLEPGAELTREQVRGIVELVSGAVEGLKPENVRVVDNYSRSLSDMLETDEGTF 233

Query: 227 LGKS-LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVE 285
           L  S L + Q ++   E  I KAL +  G    R  V+ +++++            SK+E
Sbjct: 234 LASSKLELKQQLEKYYESKIKKALESVFGPG--RVEVIPDISINW-----------SKIE 280

Query: 286 RSIRLSKDAQRSE--TSQPESAVTVEQNM-----PHVSDRKVP---LPRSL-ENTDKKEE 334
             ++  +   R E      E+ V   QN+     P  +D  +P    P +  E T   E 
Sbjct: 281 TEMKKYEAPARREGLVRSQETQVEKSQNLSPTGGPAGTDSNIPPLTYPSATSEGTSTYER 340

Query: 335 Q---SNYEINT--KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE-- 387
               +NYE+N   + I    +  ++  LS+AV+++    + VL  S+D   + + L E  
Sbjct: 341 THTITNYELNEVYQKIIQNREG-EISSLSVAVIIDAS--SSVLQNSSDWSGVINDLVEKG 397

Query: 388 INKIVSAAT 396
           +  I S+A+
Sbjct: 398 VGSITSSAS 406


>gi|229544393|ref|ZP_04433451.1| flagellar M-ring protein FliF [Bacillus coagulans 36D1]
 gi|229324878|gb|EEN90555.1| flagellar M-ring protein FliF [Bacillus coagulans 36D1]
          Length = 529

 Score = 97.1 bits (240), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 95/369 (25%), Positives = 168/369 (45%), Gaps = 21/369 (5%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAA--RFFVNSPHYDNLYVKLEVSDVNRIS 64
           L  F+KS     R++      +  V +ML +AA   +F+    Y  LY  L+VS+   I 
Sbjct: 12  LKGFWKS-----RSKKQKTIGISAVALMLVLAAGITYFMTKTKYAPLYSGLDVSETGSIK 66

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L +  +  +I+D G +I VP   V   ++ LAA+GLP + S   Y  F +   FG+T 
Sbjct: 67  DELDQEGVPSKITDGGKTIEVPEDQVDDLKVTLAAKGLPKTGSID-YSFFSQNAKFGMTD 125

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINPS 183
               + ++ A++ E+   I+ + G+  A+V I +P+   F     A+ +ASV++  + P 
Sbjct: 126 NEFNVVKLDAMQTELENLIEQMDGVEKAKVMINLPNQSVFVADSQAKASASVVL-TLKPG 184

Query: 184 V---YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240
                   +A+ +LV+ +VPNL   ++ +++   +    N    N  G + +  QAI+ +
Sbjct: 185 YELDQNQIKAVYNLVSKSVPNLPTDNIVIMNQNFEYYDLN--SSNSSGNAYTQQQAIKKQ 242

Query: 241 IEMNINKA----LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVE-RSIRLS-KDA 294
           IE +I +     L+  +G       V A+++   ++  E + +P  K   + I +S K  
Sbjct: 243 IERDIQQQVQTMLSTLMGAGKAVVTVTADIDFTQEKREEDLVEPVDKTNMKGIEISAKKI 302

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
           Q +      +A T   +   V    V          K  +  NYE+N      T   YK+
Sbjct: 303 QETYQGTGAAAGTPSGSTDSVGSSYVSGSNGNGTYSKTSDTINYEVNRIKRKITESPYKI 362

Query: 355 ERLSIAVVV 363
             L I V+V
Sbjct: 363 RDLGIEVMV 371


>gi|150020374|ref|YP_001305728.1| flagellar M-ring protein FliF [Thermosipho melanesiensis BI429]
 gi|149792895|gb|ABR30343.1| flagellar M-ring protein FliF [Thermosipho melanesiensis BI429]
          Length = 489

 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 153/314 (48%), Gaps = 27/314 (8%)

Query: 43  VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSM-VGKARIHLAAQG 101
           +N+P Y  L      +D   I   L  + I +++ + G+ I +PSS  V + R+ LA+ G
Sbjct: 1   MNAPRYVLLITANNETDAGAIVQQLESSGIPYKV-EAGNRILIPSSYNVYEVRMKLASSG 59

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           +  +SS  G+E+ D+  SFG TSF +++   RAL+GE+ RTI +I+G+  ARVH+ +P  
Sbjct: 60  ILGASSK-GFEILDQT-SFGATSFDKQVNYQRALQGELERTIATINGVKYARVHLTLPKY 117

Query: 162 GSF-RKIGARPTASVMIRAINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLL 217
             + R   A   ASV +  + P    S E ++   +L+  AV  L   +V V+D+ G+ L
Sbjct: 118 TYYVRGDMAETRASVQL-VLEPGASLSKEQVKGIIYLLTGAVEGLKPENVKVVDNFGRAL 176

Query: 218 T-ANEMERNILGKSLSIVQAIQHE--IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           +     + N    S      +Q E      I  AL A  G+   +  V+ ++N++ Q+  
Sbjct: 177 SDLVNFDENTYAASTKAELKMQLERYYRSKIQPALEAVFGLG--KVEVITDINLNWQKTE 234

Query: 275 EIVYDPDSKVERSIRLSKDAQRSETSQPESA--VTVEQNMPHVSDRKVPLPRSLENT--- 329
           + +    S     IR  +      T+ P     V  E N+P          +SLE++   
Sbjct: 235 KTITTYSSPKGGFIRSKETESEKSTTFPSDGGPVGTESNIP------TTYYQSLESSNST 288

Query: 330 --DKKEEQSNYEIN 341
             +KK E +NYE+N
Sbjct: 289 LYEKKHEITNYELN 302


>gi|51894139|ref|YP_076830.1| flagellar basal-body M-ring protein [Symbiobacterium thermophilum
           IAM 14863]
 gi|51857828|dbj|BAD41986.1| flagellar basal-body M-ring protein [Symbiobacterium thermophilum
           IAM 14863]
          Length = 576

 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 168/341 (49%), Gaps = 14/341 (4%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           ++N P ++  Y   + S+V+ +   L E  +  R++ NG  I VP+     A +  A  G
Sbjct: 43  YLNRPRWEVFYKASDPSEVSTLVAHLDELGVPSRVTGNGLVIEVPARERSAANLAKAQAG 102

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP SS + G E+F +   FG T F +++   RA+EGE++R++  I+ I  A+V++ +P+ 
Sbjct: 103 LP-SSGHVGLEIFAQPQ-FGATEFDRQVNYKRAMEGELSRSLMRIADIEYAKVNLNVPEK 160

Query: 162 GSFRKIGARPTASVMI--RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK-LLT 218
             F +    P+A+V++  R+       +  AI + VA++V  L    VTV+DS G+ L  
Sbjct: 161 SVFVRDEEPPSAAVLVQLRSGRTLDADNVTAIINFVASSVEGLTPDRVTVIDSQGRELRP 220

Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
           A++  + +  ++L+  +  + ++   + + L    G  N  ++V  EL+  + +  E + 
Sbjct: 221 ADDDAQRLDAEALAFQRQREEQLTQKLLQVLEPIFGRGNVAASVTVELDHQSSRTEERIV 280

Query: 279 DPDSKVERSIRLSKDAQRSETSQPESAVTV---EQNMPHVSDRKVPLPR----SLENTD- 330
                V      S    +  +++P    T    +   P V+   VP+ +    S E+ + 
Sbjct: 281 GQGVPVATVSERSGSQTQGTSTEPAPVSTQLPGQGETPGVTAPAVPIYQEPSVSTESGES 340

Query: 331 -KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTE 370
            +   ++ Y++  ++  T      ++R+S AV +N+  LT+
Sbjct: 341 YQSRTETRYDVGERNQVTVSPAGSVKRISAAVTINQDTLTQ 381


>gi|15642994|ref|NP_228036.1| flagellar M-ring protein [Thermotoga maritima MSB8]
 gi|4980719|gb|AAD35313.1|AE001706_12 flagellar M-ring protein [Thermotoga maritima MSB8]
          Length = 532

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 131/502 (26%), Positives = 228/502 (45%), Gaps = 74/502 (14%)

Query: 1   MAILDQLLQFFKS----GTSLGRTRILILASV---ILVPIMLFMAARFFVNSPHYDNLYV 53
           M I+++L   +K       S+ R R  ++  +   +++ I+LF       + PHY  L  
Sbjct: 1   MNIVERLRDLWKKIVDLWNSMPRERKFLVGGIGIALVIAIVLFAVV---ASVPHYRLLVS 57

Query: 54  KLEVSDVNRISVALSEANIDFRISDNGSSISVPSSM-VGKARIHLAAQGLPSSSSNSGYE 112
            L   +   I   L E N+ +++S  G  I VP S  V + R+ LA++G+   SS  G+ 
Sbjct: 58  GLNEDEAGVIIQKLEEMNVPYKVSPGGD-IYVPDSYNVYELRMKLASEGV-LGSSRKGFS 115

Query: 113 LFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARP 171
           +  + NSFG TSF +++    AL+ E+ R+I +I G+  ARVH+V+P    + R   A P
Sbjct: 116 ILSE-NSFGATSFDKQVKYQIALQEELERSIMTIKGVKDARVHLVLPKYTYYVRGEMAEP 174

Query: 172 TASVMIRAINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNI 226
            ASV++  + P    + E +R    LV+ AV  L   +V V+D+  + L+      E   
Sbjct: 175 RASVLV-VLEPGAELTREQVRGIVELVSGAVEGLKPENVRVVDNYSRSLSDMLETDEGTF 233

Query: 227 LGKS-LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVE 285
           L  S L + Q ++   E  I KAL +  G    R  V+ +++++            SK+E
Sbjct: 234 LASSKLELKQQLEKYYESKIKKALESVFGPG--RVEVIPDISINW-----------SKIE 280

Query: 286 RSIRLSKDAQRSE--TSQPESAVTVEQNMPHV-----SDRKVPLPRSL-----ENTDKKE 333
             ++  +   R E      E+ V   QN+P       +D  +P P +      E T   E
Sbjct: 281 TEMKKYEAPARREGLVRSQETQVEKSQNLPPTGGPAGTDSNIP-PLTYPSVTSEGTSTYE 339

Query: 334 EQ---SNYEINT--KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
                +NYE+N   + I    +  ++  LS+AV+++    + VL  S+D   +      I
Sbjct: 340 RTHTITNYELNEVYQKIIQNREG-EISSLSVAVIIDAS--SSVLQNSSDWSSV------I 390

Query: 389 NKIVSAATG-INSRRGDTITITSMDF---LENQLFNSGTVQVSFMDILSRHFATVINALV 444
           N +V    G I S    ++ +  + F   +E  L      Q     I +R    + +  +
Sbjct: 391 NDLVEKGVGSITSSASLSVAVAFLPFDRSIERAL------QEELKQIETRRRFVLYSVGI 444

Query: 445 FLVG--TLLVTFLGLHALRRLH 464
            L+G  T ++ +L +  +RR+ 
Sbjct: 445 ALLGFLTFMLIYLMIVQIRRIR 466


>gi|323186389|gb|EFZ71738.1| flagellar M-ring protein domain protein [Escherichia coli 1357]
          Length = 173

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/153 (36%), Positives = 85/153 (55%), Gaps = 4/153 (2%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LI+A    V +M+  A   +  +P Y  L+  L   D   I   L++ NI +R S+   +
Sbjct: 25  LIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGA 82

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE++RT
Sbjct: 83  IEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELSRT 140

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
           I +I  +  ARVH+ MP    F +    P+ASV
Sbjct: 141 IATIGPVKGARVHLAMPKPSLFVREQKSPSASV 173


>gi|154249519|ref|YP_001410344.1| flagellar M-ring protein FliF [Fervidobacterium nodosum Rt17-B1]
 gi|154153455|gb|ABS60687.1| flagellar M-ring protein FliF [Fervidobacterium nodosum Rt17-B1]
          Length = 535

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 114/469 (24%), Positives = 224/469 (47%), Gaps = 57/469 (12%)

Query: 22  ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81
           I+I+ASVIL  I+L +     VN+P Y  L       D   +   L    I +++ + G+
Sbjct: 30  IMIIASVILAIILLAI-----VNAPKYVLLLTTRTEQDAGSVIQQLETLGIPYKV-EAGN 83

Query: 82  SISVPSSM-VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140
            I +PSS  V + R+ LA+ G+ S SS  G+E+ D+  S G TSF +++    AL+GE+ 
Sbjct: 84  RILIPSSYNVYEVRMRLASTGILSGSSR-GFEILDQ-TSLGATSFDKQVRYQIALQGELE 141

Query: 141 RTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINPSVYKSAEAIR---HLVA 196
           RTI +I G+ ++RV + +P    + R   + P ASVM+  ++P    S E ++    L+ 
Sbjct: 142 RTISTIKGVQSSRVVLTLPKYTYYVRGEMSEPRASVMV-VMDPGQSLSKEQVKGIVSLIQ 200

Query: 197 AAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAIQHEIEMNINKALAAFL 253
            AV  +   ++ ++D TG+ LTA    +    +    + +   +++  +  I   L    
Sbjct: 201 GAVEGIKTENIKIIDQTGQDLTAMLNLDQSTALASTKMELKVNLENYYKQKIKVPLENIF 260

Query: 254 GVDNFRSAVVAELNMDTQQIREIV--YDPDSKVERSIRLSK-DAQRSETSQPESA-VTVE 309
           G    R  V+ ++ ++ +++ + +  Y   +K E  +R  + +++ S TSQ     V  E
Sbjct: 261 GPG--RVEVIPDVKLNWEKVEKQITTYTAPNKKEGLVRSKETESEYSTTSQGAGGPVGTE 318

Query: 310 QNMPHVSDRKVPLPRSLENTD--------KKEEQSNYEINT--KSIATTHDNYKLERLSI 359
            N+P         P + E+T+        K  E  NYE+N   ++I    +  ++E +++
Sbjct: 319 SNIP---------PTTYESTEGTGVTTYQKSHEIVNYELNQVIENIVKNTEG-EIENITV 368

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD-TITITSMDF---LE 415
           +VV++    + VL R++ + ++ +Y   I  I+  +   N+  G  T  +  + F   ++
Sbjct: 369 SVVIDSS--STVLERTS-KDEVQNY---IKTIIEKSISANTPNGSVTYAVAFLPFSREIQ 422

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
            Q +           + +R    ++ +++        ++LGL   R++ 
Sbjct: 423 EQFYKELQTTTEIQKLRTRLILVLLASILI----FFASYLGLIQFRKIK 467


>gi|153001452|ref|YP_001367133.1| flagellar MS-ring protein [Shewanella baltica OS185]
 gi|217972616|ref|YP_002357367.1| flagellar MS-ring protein [Shewanella baltica OS223]
 gi|304409960|ref|ZP_07391579.1| flagellar M-ring protein FliF [Shewanella baltica OS183]
 gi|307302327|ref|ZP_07582085.1| flagellar M-ring protein FliF [Shewanella baltica BA175]
 gi|151366070|gb|ABS09070.1| flagellar M-ring protein FliF [Shewanella baltica OS185]
 gi|217497751|gb|ACK45944.1| flagellar M-ring protein FliF [Shewanella baltica OS223]
 gi|304351369|gb|EFM15768.1| flagellar M-ring protein FliF [Shewanella baltica OS183]
 gi|306914365|gb|EFN44786.1| flagellar M-ring protein FliF [Shewanella baltica BA175]
          Length = 560

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 102/449 (22%), Positives = 201/449 (44%), Gaps = 26/449 (5%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  L  K+E  ++ ++   L +  + ++I  +   I VP     + ++ L+  
Sbjct: 53  LWAQEPEYRPLG-KMETQEMVQVLDVLDKNKVKYQI--DVDVIKVPEDKYQEVKMMLSRA 109

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           G+ S +++  +   ++ + FG++  M++     + E  +AR I+ +  +  A+V + +P 
Sbjct: 110 GVDSPAASQDF--LNQDSGFGVSQRMEQARLKHSQEENLARAIEQLQSVSRAKVILALPK 167

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
              F +  ++P+A+V+I      + +   +AI  +VA+AV  L+   VTV DS G+LL +
Sbjct: 168 ENVFARNASKPSATVVINTRRGGLGQGEVDAIVDIVASAVQGLEPSRVTVTDSNGRLLNS 227

Query: 220 NEME--RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
              +       + L +VQ  + E    I   L   LG DNF S V  +++MD   + +  
Sbjct: 228 GSQDGASATARRELELVQQKEAEYRTKIESILVPILGPDNFTSQV--DVSMDFTAVEQTS 285

Query: 278 --YDPDSKVERSIRLSKDAQRSETSQPESAV--------TVEQNMPHVSDRKVPLPRSLE 327
             Y+PD     S+R     + + T      +         +E N+P   D       +  
Sbjct: 286 KRYNPDLP---SLRSEMTVENNTTGGSSGGIPGALSNQPPMESNIPQ--DATKATESATA 340

Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN-KGRLTEVLGRSADQGKIDSYLA 386
               +E   N+E++T    T      + R+S++V V+ K       G+ A   + +  L 
Sbjct: 341 GNSHREATRNFELDTTISHTRQQVGAVRRISVSVAVDFKPGAAGENGQVARVARTEQELT 400

Query: 387 EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFL 446
            I +++  A G +S+RGD + + ++ F++  + +   +++       R     I ALV L
Sbjct: 401 NIRRLLEGAVGFSSQRGDVLEVVTVPFMDQLVEDLPALELWEQPWFWRAIKLGIGALVIL 460

Query: 447 VGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
           V  L V    L  L    +++  + G +G
Sbjct: 461 VLILAVVRPMLKRLIYPDSVNMPEDGRLG 489


>gi|170288525|ref|YP_001738763.1| flagellar M-ring protein FliF [Thermotoga sp. RQ2]
 gi|170176028|gb|ACB09080.1| flagellar M-ring protein FliF [Thermotoga sp. RQ2]
          Length = 532

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 118/429 (27%), Positives = 203/429 (47%), Gaps = 56/429 (13%)

Query: 1   MAILDQLLQFFKS----GTSLGRTRILILASV---ILVPIMLFMAARFFVNSPHYDNLYV 53
           M I+++L   +K      +S+ R R  ++  +   +++ I+LF       + PHY  L  
Sbjct: 1   MNIVERLRDLWKKIVDMWSSMPRERKFLVGGIGIALVITIVLFAVV---TSVPHYRLLVA 57

Query: 54  KLEVSDVNRISVALSEANIDFRISDNGSSISVPSSM-VGKARIHLAAQGLPSSSSNSGYE 112
            L   +   I   L E NI +++S  G  I VP S  V + R+ LA++G+   SS  G+ 
Sbjct: 58  GLNEDEAGVIIQKLEEMNIPYKVSPGGD-IYVPDSYNVYELRMKLASEGV-LGSSRKGFS 115

Query: 113 LFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARP 171
           +  + NSFG TSF +++    AL+ E+ R+I +I G+  ARVH+V+P    + R   A P
Sbjct: 116 ILSE-NSFGATSFDKQVKYQIALQEELERSIMTIKGVKDARVHLVLPKYTYYVRGEMAEP 174

Query: 172 TASVMIRAINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNI 226
            ASV++  + P    + E +R    LV+ AV  L   +V V+D+  + L+      E   
Sbjct: 175 RASVLV-VLEPGAELTREQVRGIVELVSGAVEGLKPENVRVVDNYSRSLSDMLETDEGTF 233

Query: 227 LGKS-LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVE 285
           L  S L + Q ++   E  I KAL +  G    R  V+ +++++            SK+E
Sbjct: 234 LASSKLELKQQLEKYYESKIKKALESVFGPG--RVEVIPDISINW-----------SKIE 280

Query: 286 RSIRLSKDAQRSE--TSQPESAVTVEQNM-----PHVSDRKVP---LPRSL-ENTDKKEE 334
             ++  +   R E      E+ V   QN+     P  +D  +P    P +  E T   E 
Sbjct: 281 TEMKKYEAPARREGLVRSQETQVEKSQNLSPTGGPAGTDSNIPPFTYPSATSEGTSTYER 340

Query: 335 Q---SNYEINT--KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE-- 387
               +NYE+N   + I    +  ++  LS+AV+++    + VL  ++D   + + L E  
Sbjct: 341 THTITNYELNEVYQKIIQNREG-EISSLSVAVIIDAS--SSVLQNNSDWSSVINDLVEKG 397

Query: 388 INKIVSAAT 396
           +  I S+A+
Sbjct: 398 VGSITSSAS 406


>gi|196247639|ref|ZP_03146341.1| flagellar M-ring protein FliF [Geobacillus sp. G11MC16]
 gi|196212423|gb|EDY07180.1| flagellar M-ring protein FliF [Geobacillus sp. G11MC16]
          Length = 527

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/339 (25%), Positives = 147/339 (43%), Gaps = 23/339 (6%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           FF        LY  L   +  +I   L    +   ++D G++I VP   V   ++ LAA+
Sbjct: 43  FFATRTEMVPLYSNLTPQEAGQIKATLDGRGVSAEVADGGTTIKVPKEQVDALKVELAAE 102

Query: 101 GLPSSSSNSG---YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
           G+P    NSG   Y  F +  SFG+T     + +++A++ E+A  +++I G+  A+V I 
Sbjct: 103 GIP----NSGVIDYSFFGQNASFGMTDNEFNMVKLKAMQTELANLMKTIDGVEDAKVMIN 158

Query: 158 MPDMGSF-RKIGARPTASVMIRAINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDST 213
           +P    F        +AS+++R   P    S E IR   HLVA +VPNL   ++ +++  
Sbjct: 159 LPQPSVFVSDEKGEASASIVLRT-KPGYQFSDEQIRALYHLVAKSVPNLSTDNIVIMNQF 217

Query: 214 GKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD---T 270
            +         N  G + +  Q I+ +IE +I + +   LG    +  VV  +  D   T
Sbjct: 218 FEYFDLKNDSGNSTGATFASQQQIKKQIERDIQRQVQQMLGTMMGQDKVVVSVTADVDFT 277

Query: 271 QQIRE------IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPR 324
           Q+ RE      +  + D  +  S++  K+      + P        N       +     
Sbjct: 278 QEKREENLVAPVGEENDEGIAVSVQRIKETYAGSGAPPGGTAGTGTN--ETPGYQGASGA 335

Query: 325 SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
           +  N ++ EE  N E+N          YK+  L I V+V
Sbjct: 336 TNGNYERTEETINNEVNKIKKQIVESPYKIRDLGIQVMV 374


>gi|109899352|ref|YP_662607.1| flagellar MS-ring protein [Pseudoalteromonas atlantica T6c]
 gi|109701633|gb|ABG41553.1| flagellar M-ring protein FliF [Pseudoalteromonas atlantica T6c]
          Length = 568

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 98/413 (23%), Positives = 194/413 (46%), Gaps = 26/413 (6%)

Query: 15  TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF 74
           T + R   L++A VI V I +F+    +   P Y  L  K++  ++        +  +D+
Sbjct: 38  TDMVRQLTLVVALVICVAIAVFIM--IWAQEPDYRPL-AKMQTQELIEALDYFDQNQVDY 94

Query: 75  RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134
           R+   G+++ V +      ++ +A QGL S   + G ++  +   FG++  ++++    A
Sbjct: 95  RL--EGNTVYVSADQYQNIKLGMARQGL-SQGVSEGTDIIMQDMGFGVSQRVEKVRLKHA 151

Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIR 192
            E ++ART++ +S +  A+V + +P    F +   + +A+V++ +   ++  + E  +I 
Sbjct: 152 REQQLARTLEEMSAVTRAKVLLALPKENVFARREKKASATVVVTSRRGAIMGNEEVSSIV 211

Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHEIEMNINKALA 250
            +VA+AV  L+   VTV DS G+LL +   +       K   + +  + E    I+  L 
Sbjct: 212 DIVASAVQGLEPERVTVTDSNGRLLNSGSQDSEAARSKKEFEMERKRETEYLQKIDSILI 271

Query: 251 AFLGVDNFRSAVVAELNMDTQQIREI--VYDPDSKVERS-IRLSKDAQRSETSQPESAVT 307
             LG+ N+ +   A++ MD   + +    Y+PD    RS + + +++          A+T
Sbjct: 272 PVLGLGNYTAQ--ADVTMDFTAVEQTKRSYNPDLPAVRSEMTVEENSVGGMLGGIPGALT 329

Query: 308 VEQNMPHVSDRKVPLPRSLENT-------DKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
              N P + D  +P   S  NT       + KEE  NYE++T    T      + RLS++
Sbjct: 330 ---NQPPL-DSNIPEEASASNTQTTVPGRNHKEETRNYELDTTISHTKQQTGVIRRLSVS 385

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           V ++        G S    +  + L +I +++    G +  RGD++ + S+ F
Sbjct: 386 VALDHVSTVGEDGTSTLVPRSQAELLDIRRLLQGGIGFDVTRGDSLEVVSIPF 438


>gi|315123886|ref|YP_004065890.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315017608|gb|ADT65701.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 317

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 129/248 (52%), Gaps = 9/248 (3%)

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L + NI +++ ++ + I VP   V + R+ +A++GL    S  G+E FD   +FG 
Sbjct: 68  IVAKLEQNNIPYKL-ESENKILVPQDQVYRQRMFIASEGL-IKDSRVGFEAFD-TQAFGA 124

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAI 180
           T+  Q++   RA+EGE+ARTI+++  I +A VHI  P    F +    PTASV+  +R  
Sbjct: 125 TNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASVVVNVREG 184

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQH 239
                K  + I+++V+AAVP L   +V + D +G  L   E  E +++   +      + 
Sbjct: 185 LKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIKFKSDQEK 244

Query: 240 EIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
            +E  I + LA F  G+D  + +V  + +   Q+ +  +YDP+  V     L+++  R+ 
Sbjct: 245 ALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLNEE--RTG 302

Query: 299 TSQPESAV 306
              PE  V
Sbjct: 303 RKDPEIQV 310


>gi|126175128|ref|YP_001051277.1| flagellar MS-ring protein [Shewanella baltica OS155]
 gi|125998333|gb|ABN62408.1| flagellar M-ring protein FliF [Shewanella baltica OS155]
          Length = 560

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 102/446 (22%), Positives = 202/446 (45%), Gaps = 20/446 (4%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  L  K+E  ++ ++   L +  + ++I  +   I VP     + ++ L+  
Sbjct: 53  LWAQEPEYRPLG-KMETQEMVQVLDVLDKNKVKYQI--DVDVIKVPEDKYQEVKMMLSRA 109

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           G+ S +++  +   ++ + FG++  M++     + E  +AR I+ +  +  A+V + +P 
Sbjct: 110 GVDSPAASQDF--LNQDSGFGVSQRMEQARLKHSQEENLARAIEQLQSVSRAKVILALPK 167

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
              F +  ++P+A+V+I      + +   +AI  +VA+AV  L+   VTV DS G+LL +
Sbjct: 168 ENVFARNASKPSATVVINTRRGGLGQGEVDAIVDIVASAVQGLEPSRVTVTDSNGRLLNS 227

Query: 220 NEME--RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
              +       + L +VQ  + E    I   L   LG DNF S V  +++MD   + +  
Sbjct: 228 GSQDGASATARRELELVQQKEAEYRTKIESILVPILGPDNFTSQV--DVSMDFTAVEQTS 285

Query: 278 --YDPDSKVERS-IRLSKDAQRSETSQPESAVT----VEQNMPHVSDRKVPLPRSLENTD 330
             Y+PD    RS + +  +     +     A++    +E N+P   D             
Sbjct: 286 KRYNPDLPALRSEMTVENNTTGGSSGGIPGALSNQPPMESNIPQ--DATKATESVTAGNS 343

Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN-KGRLTEVLGRSADQGKIDSYLAEIN 389
            +E   N+E++T    T      + R+S++V V+ K       G+ A   + +  L  I 
Sbjct: 344 HREATRNFELDTTISHTRQQVGAVRRISVSVAVDFKPGAAGENGQVARVARTEQELTNIR 403

Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGT 449
           +++  A G +S+RGD + + ++ F++  + +   +++       R     I ALV LV  
Sbjct: 404 RLLEGAVGFSSQRGDVLEVVTVPFMDQLVEDLPALELWEQPWFWRAIKLGIGALVILVLI 463

Query: 450 LLVTFLGLHALRRLHNIDDAKKGEVG 475
           L V    L  L    +++  + G +G
Sbjct: 464 LAVVRPMLKRLIYPDSVNMPEDGRLG 489


>gi|188586017|ref|YP_001917562.1| flagellar M-ring protein FliF [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350704|gb|ACB84974.1| flagellar M-ring protein FliF [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 519

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 132/562 (23%), Positives = 231/562 (41%), Gaps = 94/562 (16%)

Query: 15  TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF 74
           T+LG   + I+ +++L   ML            Y  +   L+  D + I+  + +  + +
Sbjct: 29  TALG---LFIIGTLVLSVSML---------QTDYTEVARDLDPRDASEIAEMIEDMGVSY 76

Query: 75  RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134
           +I D GS I VP     + R+ LA  GLP      GYE  D     GLT   +E+ +  A
Sbjct: 77  QIEDGGSRILVPEDDHDQVRLELAGAGLPRGGV-LGYEELD-TQQLGLTESEREMRQKIA 134

Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS---VYKSAEAI 191
           LEGE+ RTI+    +  ARVH+V+P+   F +      A+V +  + P      +   +I
Sbjct: 135 LEGELVRTIRRYPEVEDARVHLVLPERSIFEETREDSQAAVFL-DLEPHRELTEQQISSI 193

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---------ILGKSLSIVQAIQHEIE 242
            +LVA +V  L   +VT+  ++G  + +++ + +          + K LSI +  Q+ ++
Sbjct: 194 VNLVAHSVEGLTPKNVTL--TSGDRMLSDKTQSDDKNSPSAGSEVEKRLSIQEEFQNTLQ 251

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQRSE- 298
            ++   L   +G  N  + V AEL+ D  +    +++P   D  +  S+   ++    E 
Sbjct: 252 SSVESMLENIVGRGNVTARVNAELDFDEFESFSELFEPVEGDEGILVSMHREEEFYSGED 311

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
            SQ        +  P    ++V       + ++ +E  NYE+N     +      L +LS
Sbjct: 312 VSQGGVPGDPAEGTPEY--QEVTGEGGSFDYERIDETRNYEVNKIEERSRLAPGALNKLS 369

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN-SRRGDTITITSMDFLENQ 417
           +AV VN+           D+ ++DS    I  +V  A GIN       IT+  MDF    
Sbjct: 370 VAVAVNQ---------ELDEDEMDS----IEALVEDAVGINLENENHQITVEQMDF---- 412

Query: 418 LFNSGTVQVSFMDILS------RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471
                    S  D+L+      +  A     +   +G  ++  L L   +    I D K+
Sbjct: 413 -------DTSLQDMLAAQHEKKQQMAAQQRWITLGIGAAVLVVLALIGRKIYKTIRDRKE 465

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
                        I   +    M  D  A   +++DI      +Q +I+ +  K+     
Sbjct: 466 -------------IEDRLEREQMVQDQAA---ASEDIEPEVPKVQKQISDFAEKKP---- 505

Query: 532 LHMIEINEERFAKILRKWARSE 553
                   E FAK+L+ W   E
Sbjct: 506 --------EEFAKVLKAWLAEE 519


>gi|321315387|ref|YP_004207674.1| flagellar MS-ring protein [Bacillus subtilis BSn5]
 gi|320021661|gb|ADV96647.1| flagellar MS-ring protein [Bacillus subtilis BSn5]
          Length = 531

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 176/379 (46%), Gaps = 25/379 (6%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M + ++  +F+K+ + L +   +++ S +   I++ +    F ++     LY  L   + 
Sbjct: 1   MQMKNKTSEFWKNRSKLQK---ILMVSALAAIIIIGIIISVFASNSKMAPLYKDLSAEEA 57

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +I   L    +   +S+ G+ ISVP   V   ++ +AA+GLP + S   Y  F +   F
Sbjct: 58  GQIKEELDAKKVPNELSNGGTVISVPEDQVDSLKVQMAAEGLPKTGS-IDYSFFGQNAGF 116

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTA--SVMIR 178
           GLT    ++ +V+A + E++  I  + GI +++V I +P    F  +G   +A  + ++ 
Sbjct: 117 GLTDNEFDMVKVKATQTELSNLINEMDGIKSSKVMINLPKDAVF--VGEEQSAASASIVL 174

Query: 179 AINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ 235
            I P        I    HLV+ +VPNL   ++ ++D        ++ +      S S  Q
Sbjct: 175 QIQPGYTLDQSQINGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSDSDAGSYADSYSSQQ 234

Query: 236 AIQHEIEMNINKALAAFLGV----DNFRSAVVAELNMDTQQIREIVYDP-DSKVERSIRL 290
            I+ ++E +I K + + LG     D    +V A+++   +   E + +P D +    I +
Sbjct: 235 GIKSQVEKDIQKHVQSLLGTMMGQDKVVVSVTADIDFTKENRTEDIVEPVDKENMEGIAV 294

Query: 291 SKDAQRSETSQPESAV---TVEQNMPHVSDRKVPLPRSLE-NTDKKEEQSNYEINT--KS 344
           S + + SET Q + A    T       V++ K     +   N +K   + NYE+N   K 
Sbjct: 295 SAE-KVSETYQGDGAANGGTAGTGEEDVTNYKADGENTESGNYEKNSNKINYEVNRIHKE 353

Query: 345 IATTHDNYKLERLSIAVVV 363
           IA +   YK+  L I V+V
Sbjct: 354 IAESP--YKVRDLGIQVMV 370


>gi|160876177|ref|YP_001555493.1| flagellar MS-ring protein [Shewanella baltica OS195]
 gi|160861699|gb|ABX50233.1| flagellar M-ring protein FliF [Shewanella baltica OS195]
 gi|315268373|gb|ADT95226.1| flagellar M-ring protein FliF [Shewanella baltica OS678]
          Length = 560

 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 98/426 (23%), Positives = 191/426 (44%), Gaps = 26/426 (6%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  L  K+E  ++ ++   L +  + ++I  +   I VP     + ++ L+  
Sbjct: 53  LWAQEPEYRPLG-KMETQEMVQVLDVLDKNKVKYQI--DVDVIKVPEDKYQEVKMMLSRA 109

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           G+ S +++  +   ++ + FG++  M++     + E  +AR I+ +  +  A+V + +P 
Sbjct: 110 GVDSPAASQDF--LNQDSGFGVSQRMEQARLKHSQEENLARAIEQLQSVSRAKVILALPK 167

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
              F +  ++P+A+V+I      + +   +AI  +VA+AV  L+   VTV DS G+LL +
Sbjct: 168 ENVFARNASKPSATVVINTRRGGLGQGEVDAIVDIVASAVQGLEPSRVTVTDSNGRLLNS 227

Query: 220 NEME--RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
              +       + L +VQ  + E    I   L   LG DNF S V  +++MD   + +  
Sbjct: 228 GSQDGASATARRELELVQQKEAEYRTKIESILVPILGPDNFTSQV--DVSMDFTAVEQTS 285

Query: 278 --YDPDSKVERSIRLSKDAQRSETSQPESAV--------TVEQNMPHVSDRKVPLPRSLE 327
             Y+PD     S+R     + + T      +         +E N+P   D          
Sbjct: 286 KRYNPDLP---SLRSEMTVENNTTGGSSGGIPGALSNQPPMESNIPQ--DATKATESVTA 340

Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN-KGRLTEVLGRSADQGKIDSYLA 386
               +E   N+E++T    T      + R+S++V V+ K       G+ A   + +  L 
Sbjct: 341 GNSHREATRNFELDTTISHTRQQVGAVRRISVSVAVDFKPGAAGENGQVARVARTEQELT 400

Query: 387 EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFL 446
            I +++  A G +S+RGD + + ++ F++  + +   +++       R     I ALV L
Sbjct: 401 NIRRLLEGAVGFSSQRGDVLEVVTVPFMDQLVEDLPALELWEQPWFWRAIKLGIGALVIL 460

Query: 447 VGTLLV 452
           V  L V
Sbjct: 461 VLILAV 466


>gi|304404244|ref|ZP_07385906.1| flagellar M-ring protein FliF [Paenibacillus curdlanolyticus YK9]
 gi|304347222|gb|EFM13054.1| flagellar M-ring protein FliF [Paenibacillus curdlanolyticus YK9]
          Length = 527

 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 97/433 (22%), Positives = 202/433 (46%), Gaps = 40/433 (9%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           D+L Q++   +  G+ + + L   +   I+  +   +  +   Y+  +  L+ +D   + 
Sbjct: 10  DRLSQWW---SQTGKKQKIWLGGTLGFLILAIILLTYIFSRTDYEIAFQNLDTTDSAAVM 66

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS-FGLT 123
             L  + I +++S +G SI VPS++  + +I + +QGL  + S  G++ F++ +S +G T
Sbjct: 67  TYLDSSGIKYQLSSDGKSILVPSAVASRVKIDVGSQGLVRNGS-IGFDSFNQNSSQWGTT 125

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRAIN- 181
                +    AL GE+ + + ++ G+ +++V + +P    F  +      AS+ ++  N 
Sbjct: 126 DNEFNVKYRNALNGEVQQLLNNMQGVESSKVLVTLPQESVFADREEEHAIASITLKFTNG 185

Query: 182 --PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS------LSI 233
             PS  K  +    LV  AVPNL + D+T+  + G+L+++        G +        I
Sbjct: 186 YRPS-QKEVDGYFKLVKTAVPNLAIDDITIASTEGELVSSEAGGSPANGGTEVADQLFQI 244

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-DSKVERSIRLSK 292
            +  + E++ NI + L+  +G  N    + + LN D +   + + +P  +   + + LS+
Sbjct: 245 QRKYETELKKNIQQYLSTMIGEGNVAVYIASSLNFDQKTSEQNLVEPIANNNNKGVVLSE 304

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVP---LPRSLENTDKKEEQS--NYEINTKSIAT 347
                 ++  +SAV     +P   +  VP         N+  +E  S  NYEIN      
Sbjct: 305 QETSKTSTNTDSAVG---GVPGSGETDVPGYTAANGAGNSSNEETSSIRNYEINRIKNIV 361

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN-------S 400
               + ++ L+I++ VN+  L     +   Q +I +Y+ +I +   A +G++       S
Sbjct: 362 ESSPFMIKDLNISIGVNRASL-----QGEAQTQITNYVKQILRTQLAQSGLDVTSDSVVS 416

Query: 401 RRGDTITITSMDF 413
           +R   +T+ + DF
Sbjct: 417 QR---VTVMAQDF 426


>gi|15895431|ref|NP_348780.1| flagellar MS-ring protein [Clostridium acetobutylicum ATCC 824]
 gi|15025155|gb|AAK80120.1|AE007716_9 Flagellar basal body M-ring protein FliF [Clostridium
           acetobutylicum ATCC 824]
 gi|325509577|gb|ADZ21213.1| flagellar MS-ring protein [Clostridium acetobutylicum EA 2018]
          Length = 544

 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 108/412 (26%), Positives = 188/412 (45%), Gaps = 43/412 (10%)

Query: 22  ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81
            LI+   I+  +++F+ +        Y  L+ KL+ SD   +   L    I  +   + +
Sbjct: 26  FLIIVVAIIASLVVFLVS---TTRTKYAVLFSKLDSSDAATVISKLDSDKIAHKEDSSTN 82

Query: 82  SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK-VNSFGLTSFMQEITRVRALEGEIA 140
           +I VP++ V K R+  A   L   S  +G+ELFD   N FG T     +   RAL+GE+ 
Sbjct: 83  TIYVPAADVDKLRLQYAT-NLKGGS--TGFELFDNSANKFGTTDSEFNVEYQRALQGELE 139

Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI--RAINPSVYKSAEAIRHLVAAA 198
           RTI++   I  ARVH+VM +  +F K     +ASV +  +A         +AI  LV+ +
Sbjct: 140 RTIKNFDEISDARVHLVMSEDSAFVKDSTPASASVTVKMKAGETLSKDQVKAIISLVSGS 199

Query: 199 VPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS------------IVQAIQHEIEMNIN 246
           V NL   +V V+D    LL+ +    N  GK  S            +   ++ E+E    
Sbjct: 200 VKNLPKENVQVVDDKMALLSKDLY--NSKGKDDSSDTTDSAENRNKMESNVESELEKKAL 257

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVY-----DPDSKVERSIRLSKDAQRSETSQ 301
            +L +  G    +  + A+LN D Q+     Y     +P+     +I +S+ +Q S T+ 
Sbjct: 258 DSLESIYGKGKVKVKINADLNFDAQETNSQTYYDNKGNPNDPKNPTI-VSQHSQES-TNS 315

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
              + +      + +   +    S   +  K+  +NY++++++  T      + RL+I+V
Sbjct: 316 QPQSTSSSPLDNNTNSNTIANNNSNSTSSSKDVTTNYDVSSETNKTVKAPGDVRRLTISV 375

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           +V+ G++          G   S L     +VS A G N +RGDTI++  + F
Sbjct: 376 IVD-GKI---------NGDTQSTLTN---VVSNAVGYNQQRGDTISVEGLPF 414


>gi|153953778|ref|YP_001394543.1| flagellar MS-ring protein [Clostridium kluyveri DSM 555]
 gi|219854394|ref|YP_002471516.1| hypothetical protein CKR_1051 [Clostridium kluyveri NBRC 12016]
 gi|146346659|gb|EDK33195.1| FliF [Clostridium kluyveri DSM 555]
 gi|219568118|dbj|BAH06102.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 527

 Score = 94.0 bits (232), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 97/378 (25%), Positives = 172/378 (45%), Gaps = 37/378 (9%)

Query: 48  YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           Y  L+  ++  D++ +   L E  +D ++   G+SI VP   V   R+ + ++ +  ++ 
Sbjct: 49  YAVLFSNMDSKDLSSVYKQLQEDKVDVKVE--GNSILVPEGEVDATRMKVLSE-VEITNG 105

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
           + G+EL D+ +  G T    +I   RAL+GE+ RTI+S+  +  ARVH+V+PD   F K 
Sbjct: 106 SEGFELLDQ-SKLGSTDTEIKINYQRALQGELERTIKSLPEVENARVHLVLPDDTEFVKD 164

Query: 168 GARPTASVMIRAINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLLTANEMER 224
            +  +ASV ++ +      S E ++    LV+ AV N+   +V V+D    LL+ +  E 
Sbjct: 165 TSPGSASVTLK-LKEGEELSKEQVKALVSLVSGAVKNVPKENVQVIDDNMTLLSKDLFED 223

Query: 225 NILGKSLSI----VQAIQHEIEMNINKALAAFL----GVDNFRSAVVAELNMDTQQIREI 276
               +  +I     Q ++ + E N+ K L + L    G D  +  V A+L+ D  Q    
Sbjct: 224 EANSEDSTIPAEKQQQLKEQYEKNLEKNLLSMLEAVYGKDKVQVKVNADLDFDAVQQNST 283

Query: 277 VYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQS 336
            YD +S V     +++  Q   T+Q  S                P+  ++ NT      +
Sbjct: 284 TYDNNSVVVSEHTINETNQGDTTNQTGS----------------PVDNNMSNT----ITN 323

Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI-DSYLAEINKIVSAA 395
           N      +   T  NY + ++    V   G +  +    A  G + D+    I  +  +A
Sbjct: 324 NTTGGNSTYNETTRNYNVPKVEQKTVKAPGSVKRLTASVALDGDVDDATTTAIRNLAVSA 383

Query: 396 TGINSRRGDTITITSMDF 413
            G +  RGDTI++  + F
Sbjct: 384 IGYDGNRGDTISVEGLPF 401


>gi|312126819|ref|YP_003991693.1| flagellar m-ring protein flif [Caldicellulosiruptor hydrothermalis
           108]
 gi|311776838|gb|ADQ06324.1| flagellar M-ring protein FliF [Caldicellulosiruptor hydrothermalis
           108]
          Length = 560

 Score = 94.0 bits (232), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 180/367 (49%), Gaps = 24/367 (6%)

Query: 15  TSLGRTRILIL---ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71
           +SL +++ ++L   +S+IL+ ++   AA +    PHY  ++  L+  +   I   LSE  
Sbjct: 17  SSLSKSQKIMLVVSSSIILLSVI---AAIYITTRPHYVTIFSGLDPKEAAEIQNILSEQK 73

Query: 72  IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131
           ID + ++ G++I V  + V +A++  A  G P +SS +  +     +S   T   +  T 
Sbjct: 74  IDSKAANGGTTILVRDTDVDRAKMAAAQAGYPKNSSITFEDALKLSSSMTATEADKRRTF 133

Query: 132 VRALEGEIARTIQSISGIVA-ARVHIVMPDMGSF--RKIGARPTASVMIRAINPSVYKSA 188
           ++  E EI + ++ +S  +  A V++ +P+  +F  +    +PTASV +           
Sbjct: 134 IKLKESEIQQALKQMSDYIEDAVVNLSIPEDYTFALKSEATKPTASVKLTLKKSLSSDQI 193

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEMNIN 246
           E I+  VAA+V  L   +V ++D+ G  L++N  +    +  K L +  A ++EIE  + 
Sbjct: 194 EGIQRFVAASVEGLLPENVVIIDNKGNYLSSNSSDTTEGLSSKQLQLKIATKNEIEKKVK 253

Query: 247 KALAAFLGV-DNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQRSETSQP 302
           + L +++   ++ + +V  ++N D Q+I E  Y P   DS +  S + +K+  +S T+  
Sbjct: 254 ELLGSYVSSPEDVKVSVNLDMNFDMQKISETKYSPVLEDSGIVVSKKTTKEEAQS-TNSS 312

Query: 303 ESAVTVEQNMPHVSDRKVPLPRS--LENTDKKEEQSNYEINTKSIATTHD----NYKLER 356
            S V      P  +  + P+          K +E  NY+ N K I T       NY  ++
Sbjct: 313 SSGVPGTDTNPTQNTTQYPISSQGGQSTYTKTDETVNYQNNEKKIETIKAPGTINY--DK 370

Query: 357 LSIAVVV 363
            SIAVV+
Sbjct: 371 SSIAVVL 377


>gi|229918627|ref|YP_002887273.1| flagellar MS-ring protein [Exiguobacterium sp. AT1b]
 gi|229470056|gb|ACQ71828.1| flagellar M-ring protein FliF [Exiguobacterium sp. AT1b]
          Length = 523

 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 143/288 (49%), Gaps = 26/288 (9%)

Query: 5   DQLLQFFKSGT----SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           +QL + FKS T    ++   R L+    I V ++  +   FF++ P+   LY  L   + 
Sbjct: 3   EQLKERFKSMTDALKAMPAKRKLVWGISIAVILIAALVLTFFLSRPNMAPLYTNLSAQEA 62

Query: 61  NRISVALSEANI--DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
             ++  L+   +  + + + NG S+ VP+ MV + ++ LAA G+P S S   Y  F +  
Sbjct: 63  GEVTEKLTADGVQSEIKATSNGVSVYVPTEMVDQLKVSLAAAGIPKSGS-IDYSFFSENA 121

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMI 177
            FG T     +    A++ E+ R I  I GI  A+V I +P+   F  +    PTAS+++
Sbjct: 122 GFGTTDREMAVIERSAMQTELERLITQIEGINQAKVIISLPEKSVFLAEDQGEPTASIVL 181

Query: 178 RA-----INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKS 230
                  + P+  K    + HL++ +VPNL   +++++D   +  T  ++++ ++  G S
Sbjct: 182 NIGAGTNLEPNTVK---GLYHLISKSVPNLKPENISIMD---QYFTYYDLDQTVVAGGSS 235

Query: 231 ---LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
              L++ + ++ ++   I + L+  LG  +   +V A  ++DT Q  E
Sbjct: 236 SDPLALKRQVEKDVRQQIQQMLSVLLGERSVLVSVTA--DIDTTQTAE 281


>gi|326386946|ref|ZP_08208560.1| flagellar M-ring protein FliF [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208626|gb|EGD59429.1| flagellar M-ring protein FliF [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 561

 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 166/376 (44%), Gaps = 29/376 (7%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110
           LY  L  S+  +++ AL +A I + I++   +++V    + KAR+  AA G   ++  +G
Sbjct: 72  LYTDLNDSERAQVTAALDKAAIRYTINNQTGAVTVGEDDLYKARMVAAADGA-LATPETG 130

Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170
            ++ DK+   G +  ++      A E E+  TI  I G+ A RVH+  P+   F +  A 
Sbjct: 131 EQMIDKL-PMGASRTVEGQRLQAARERELELTIMQIEGVEAVRVHLAEPEKSVFVRDNAP 189

Query: 171 PTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG 228
            TASVM++         ++  AI +LVA +V  L +  V V+D  G LL++    R    
Sbjct: 190 ATASVMVKLAKGRQLSDSQVTAIVNLVAGSVAGLSVDAVKVIDQQGHLLSSG---RPGDD 246

Query: 229 KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288
             + +   ++ ++   +   L   LG  NF S +  +L+MD Q      YD    V    
Sbjct: 247 DRIEMQARLEDKLRQQVETLLTPMLGTGNFSSEIQVDLDMDQQTSARESYDKQGVVRSET 306

Query: 289 RLSKDAQRSETSQPESAVTVEQNM-----------PHVSDRKVPLPRSLENTDKKEEQSN 337
           + +  +Q +    P     V  N            P  +      P     +       N
Sbjct: 307 QTA--SQTTGNGAPVGVPGVLSNTPPPQTQPSPGAPTANTTPASPPAPSPTSSDTSSTRN 364

Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG 397
           YE+  +   T     K+ RLS+AV ++   + +     A  G+ID    +I ++VSAA G
Sbjct: 365 YELGREVAVTNASPGKVRRLSVAVALSGAAMAK-----AKPGEID----QIKQLVSAAVG 415

Query: 398 INSRRGDTITITSMDF 413
            +  RGD +T+   +F
Sbjct: 416 ADPTRGDQVTVVVRNF 431


>gi|312135854|ref|YP_004003192.1| flagellar m-ring protein flif [Caldicellulosiruptor owensensis OL]
 gi|311775905|gb|ADQ05392.1| flagellar M-ring protein FliF [Caldicellulosiruptor owensensis OL]
          Length = 560

 Score = 93.6 bits (231), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 94/357 (26%), Positives = 174/357 (48%), Gaps = 21/357 (5%)

Query: 22  ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81
           ++I +S+IL+ +++   A +    PHY  ++  L+  +   I   L+E  ID ++++ G+
Sbjct: 27  LVISSSIILLSVII---ALYITTRPHYVTIFSGLDPKEAAEIQNILNEQKIDSKVANGGT 83

Query: 82  SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
           +I V  + V +A++  A  G P +SS +  +     +S   T   +  T ++  E EI  
Sbjct: 84  TILVRDTDVDRAKMAAAQAGYPKNSSITFEDALKLSSSMTATESDKRRTFIKLKESEIQE 143

Query: 142 TIQSISGIVA-ARVHIVMPDMGSF--RKIGARPTASVMIRAINPSVYKSAEAIRHLVAAA 198
            ++ +S  +  A V++ +P+  +F  +    +PTASV +           E I+  VAA+
Sbjct: 144 ALKQMSDYIEDAVVNLSVPEDYTFALKDEATKPTASVKLTLKKSLGSNQIEGIQRFVAAS 203

Query: 199 VPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV- 255
           V  L   +V ++D+ G  L++N  +    +  K L I  A ++EIE  + + L +++   
Sbjct: 204 VEGLLPENVVIIDNKGNYLSSNSSDTTEGLSSKQLQIKIATKNEIEKKVKELLGSYVSSP 263

Query: 256 DNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQRSETSQPESAVTVEQNM 312
           ++ + +V  ++N D Q+I E  Y P   DS +  S + +K+  +S T+   S V      
Sbjct: 264 EDVKVSVNLDMNFDMQKISETKYFPVLEDSGIVVSKKTTKEEAQS-TNSSSSGVPGTDTN 322

Query: 313 PHVSDRKVPLPRS--LENTDKKEEQSNYEINTKSIATTHD----NYKLERLSIAVVV 363
           P  +  + P+          K +E  NY+ N K I T       NY  +R SIAVV+
Sbjct: 323 PTQNTTQYPISSQGGQSTYTKTDETVNYQNNEKKIETIKAPGTINY--DRSSIAVVL 377


>gi|221309496|ref|ZP_03591343.1| flagellar MS-ring protein [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221313821|ref|ZP_03595626.1| flagellar MS-ring protein [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221318745|ref|ZP_03600039.1| flagellar MS-ring protein [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221323016|ref|ZP_03604310.1| flagellar MS-ring protein [Bacillus subtilis subsp. subtilis str.
           SMY]
          Length = 531

 Score = 93.6 bits (231), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 175/379 (46%), Gaps = 25/379 (6%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M + ++  +F+K+ + L +   +++ S +   I++ +    F ++     LY  L   + 
Sbjct: 1   MQMKNKTSEFWKNRSKLQK---ILMVSALAAIIIIGIIISVFASNSKMAPLYKDLSAEEA 57

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +I   L    +   +S+ G+ ISVP   V   ++ +AA+GLP + S   Y  F +   F
Sbjct: 58  GQIKEELDAKKVPNELSNGGTVISVPEDQVDSLKVQMAAEGLPKTGS-IDYSFFGQNAGF 116

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTA--SVMIR 178
           GLT    ++ +V+A + E++  I  + GI  ++V I +P    F  +G   +A  + ++ 
Sbjct: 117 GLTDNEFDMVKVKATQTELSNLINEMDGIKNSKVMINLPKDAVF--VGEEQSAASASIVL 174

Query: 179 AINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ 235
            I P        I    HLV+ +VPNL   ++ ++D        ++ +      S S  Q
Sbjct: 175 QIQPGYTLDQSQINGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSDSDAGSYADSYSSQQ 234

Query: 236 AIQHEIEMNINKALAAFLGV----DNFRSAVVAELNMDTQQIREIVYDP-DSKVERSIRL 290
            I+ ++E +I K + + LG     D    +V A+++   +   E + +P D +    I +
Sbjct: 235 GIKSQVEKDIQKHVQSLLGTMMGQDKVVVSVTADIDFTKENRTEDIVEPVDKENMEGIAV 294

Query: 291 SKDAQRSETSQPESAV---TVEQNMPHVSDRKVPLPRSLE-NTDKKEEQSNYEINT--KS 344
           S + + SET Q + A    T       V++ K     +   N +K   + NYE+N   K 
Sbjct: 295 SAE-KVSETYQGDGAANGGTAGTGEEDVTNYKADGENTESGNYEKNSNKINYEVNRIHKE 353

Query: 345 IATTHDNYKLERLSIAVVV 363
           IA +   YK+  L I V+V
Sbjct: 354 IAESP--YKVRDLGIQVMV 370


>gi|127512297|ref|YP_001093494.1| flagellar MS-ring protein [Shewanella loihica PV-4]
 gi|126637592|gb|ABO23235.1| flagellar M-ring protein FliF [Shewanella loihica PV-4]
          Length = 565

 Score = 93.6 bits (231), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 101/446 (22%), Positives = 203/446 (45%), Gaps = 31/446 (6%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  L  K++  ++ ++   L +  ++++I  +   + VP       ++ L+  
Sbjct: 56  LWAQEPEYRPLG-KMDTQEMVQVLDVLDKNKVNYQI--DVDVLKVPEDQYQDVKMMLSRA 112

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           G+ +S S   Y    K + FG++  M+      + E  +ARTI+ +  +  A+V + +P 
Sbjct: 113 GIDNSPSRDDY--LSKDSGFGVSQRMEAARLKNSQEQNLARTIEELKSVSRAKVILAIPK 170

Query: 161 MGSFRKIGARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
              F +  ++P+A+V++      +  +  ++I  +VA+AV  L+   VTV D+ G+LL +
Sbjct: 171 ENVFARNRSKPSATVVVNTRRGGLGQEEVDSIVDIVASAVHGLEPTRVTVTDANGRLLNS 230

Query: 220 NEMERNI--LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
                      + L +VQ  + E    I   L   LG +NF + V  ++NMD   + +  
Sbjct: 231 GSQTAGSARARRELELVQQKEAEYRSKIESILMPILGPENFTAQV--DVNMDFTSVEQTA 288

Query: 278 --YDPDSKVERS-IRLSKDAQRSETSQPESAVT----VEQNMPHVSDRKVPLPRSLENTD 330
             Y+PD    RS + +  ++  + T     A++    +E N+P  +       ++L  + 
Sbjct: 289 KRYNPDLPAVRSEMTVENNSTGASTGGIAGALSNQPPMEANIPQQATGTSAQEQTLPGSS 348

Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI------DSY 384
            KE   NYE++T +I+ T     + R     V    +     G + + G++      +  
Sbjct: 349 HKEATRNYELDT-TISHTRQQVGVVRRVSVSVAVDFK----TGPAGEDGQVTRVARTEQE 403

Query: 385 LAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALV 444
           L+ I +++  A G N++RGD I + ++ F++  +  +  + +       R    V+  L+
Sbjct: 404 LSNIRRLLEGAVGFNTQRGDMIEVVTVPFMDQLVEEAPALAIYEEPWFWRAIKLVMGGLI 463

Query: 445 FLVGTLLVTFLGLHALRRLHNIDDAK 470
            LV   L+ F+    L+RL   D  K
Sbjct: 464 ILV---LILFVVRPMLKRLIYPDGQK 486


>gi|16078684|ref|NP_389503.1| flagellar MS-ring protein [Bacillus subtilis subsp. subtilis str.
           168]
 gi|120324|sp|P23447|FLIF_BACSU RecName: Full=Flagellar M-ring protein
 gi|2633993|emb|CAB13494.1| flagellar basal-body M-ring protein [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 536

 Score = 93.2 bits (230), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 172/377 (45%), Gaps = 21/377 (5%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M + ++  +F+K+ + L +   +++ S +   I++ +    F ++     LY  L   + 
Sbjct: 6   MQMKNKTSEFWKNRSKLQK---ILMVSALAAIIIIGIIISVFASNSKMAPLYKDLSAEEA 62

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +I   L    +   +S+ G+ ISVP   V   ++ +AA+GLP + S   Y  F +   F
Sbjct: 63  GQIKEELDAKKVPNELSNGGTVISVPEDQVDSLKVQMAAEGLPKTGS-IDYSFFGQNAGF 121

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLT    ++ +V+A + E++  I  + GI  ++V I +P    F        ++ ++  I
Sbjct: 122 GLTDNEFDMVKVKATQTELSNLINEMDGIKNSKVMINLPKDAVFVGEEQSAASASIVLQI 181

Query: 181 NPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI 237
            P        I    HLV+ +VPNL   ++ ++D        ++ +      S S  Q I
Sbjct: 182 QPGYTLDQSQINGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSDSDAGSYADSYSSQQGI 241

Query: 238 QHEIEMNINKALAAFLGV----DNFRSAVVAELNMDTQQIREIVYDP-DSKVERSIRLSK 292
           + ++E +I K + + LG     D    +V A+++   +   E + +P D +    I +S 
Sbjct: 242 KSQVEKDIQKHVQSLLGTMMGQDKVVVSVTADIDFTKENRTEDIVEPVDKENMEGIAVSA 301

Query: 293 DAQRSETSQPESAV---TVEQNMPHVSDRKVPLPRSLE-NTDKKEEQSNYEINT--KSIA 346
           + + SET Q + A    T       V++ K     +   N +K   + NYE+N   K IA
Sbjct: 302 E-KVSETYQGDGAANGGTAGTGEEDVTNYKADGENTESGNYEKNSNKINYEVNRIHKEIA 360

Query: 347 TTHDNYKLERLSIAVVV 363
            +   YK+  L I V+V
Sbjct: 361 ESP--YKVRDLGIQVMV 375


>gi|149188085|ref|ZP_01866380.1| flagellar M-ring protein [Vibrio shilonii AK1]
 gi|148838073|gb|EDL55015.1| flagellar M-ring protein [Vibrio shilonii AK1]
          Length = 582

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 93/413 (22%), Positives = 190/413 (46%), Gaps = 28/413 (6%)

Query: 19  RTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76
           R  +L+L+  I V   +MLF    F+V  P    L V  E  ++  +   L +  + +++
Sbjct: 55  RQIVLVLSISICVALIVMLF----FWVKEPEMRPLGV-YETEELIPVLDYLDQKKVQYKL 109

Query: 77  SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136
              G+++SVP+S     ++ +   G+ + +SN+G ++  +   FG++  +++     + E
Sbjct: 110 E--GNALSVPASEYNNLKLDMVRAGI-NRASNTGDDILMQDMGFGVSQRLEQERLKLSRE 166

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHL 194
            ++ + I+ +  +  ARV + +P    F +     +ASV +     +V +  E  ++  +
Sbjct: 167 RQLGKAIEQMKQVRTARVLLALPKQSVFVRHNQEASASVFLTLATGAVLRQQEVDSVVDM 226

Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKALAAF 252
           VA+AVP +    +TV D  G+LL++   +   +   K   + Q  +  +   I+  L   
Sbjct: 227 VASAVPGMKPSRITVTDQHGRLLSSGSQDAASMARRKEQELEQNQEQALREKIDSVLIPI 286

Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------TSQPE 303
           LG+ N+ + V  EL+    +     +DP++   RS    +D              ++QP 
Sbjct: 287 LGLGNYTAQVDIELDFSAVEQTRKRFDPNTPATRSEYTLEDYNNGNVVAGVPGALSNQPP 346

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
           +  ++  ++  + D  +    S+     KE   N+E++T        +  + R ++AV +
Sbjct: 347 ADASIPTDVAQMKDGSIMGQGSVH----KEATRNFELDTTISHERKQSGVVNRQTVAVAI 402

Query: 364 -NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
            N+  +    G    Q + +S LA I +++  A G N  RGD + + SM F E
Sbjct: 403 KNRSSVNPDTGEVTYQPRSESELAAIRQVLIGAVGFNENRGDLLNVLSMTFEE 455


>gi|332994121|gb|AEF04176.1| flagellar MS-ring protein [Alteromonas sp. SN2]
          Length = 564

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 109/440 (24%), Positives = 209/440 (47%), Gaps = 47/440 (10%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           R   L++  VI V I +F+    +   P +  L  K+E  ++      +    I++R+  
Sbjct: 39  RQMALVVVLVICVAIAVFIL--IWAQEPDFRPL-AKMETQELIETLDYMDANQIEYRL-- 93

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR-ALEG 137
            G+++ V S      R+ +  QGL + SS++G ++  +   FG++  + E+ R++ A E 
Sbjct: 94  EGNTVYVRSDEFQTIRLGMTRQGL-TGSSDAGTDIIMQDMGFGVSQRV-EMERLKHAREQ 151

Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLV 195
           +IA TI+ IS I  ARV + MP    F +   + +A+V++ A    V    E  ++  +V
Sbjct: 152 QIAATIEDISSIQKARVLLAMPKENVFARREKKASATVVLTAKRGKVIAGEEVDSVIDIV 211

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN--------INK 247
           A+AV N++   VTV DS G+LL +   +      SLS     ++EIE          I+ 
Sbjct: 212 ASAVQNMEPSAVTVTDSNGRLLNSGSQD------SLSARARKEYEIERQREQEYLEKIDA 265

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREI--VYDPDSKVERSIRLSKDAQ---------R 296
            L   LG+ N+ +   A+++MD   + +    Y+PD    RS  +++             
Sbjct: 266 ILIPVLGIGNYTAQ--ADVSMDFTALEQTQRSYNPDLPAVRSEMINEQNSVGGGAMGIPG 323

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
           + T+QP     ++ N+P   + +     +L  +  K    NYE++T    T   +  + R
Sbjct: 324 ALTNQP----PLDSNIPE--NPEAGAQATLPGSTSKVSTRNYELDTTISHTKKQSGVIRR 377

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF--L 414
           LS++V V+  ++    G ++ + +    L  I +++    G +  RGD++ + S+ F  +
Sbjct: 378 LSVSVAVDYLQVAGEDGTTSAEPRNQEALLNIRRLLQGGVGFDVTRGDSLEVVSVPFTRM 437

Query: 415 ENQLFNSGTV--QVSFMDIL 432
           ++ +     +  Q +F+ IL
Sbjct: 438 DDGVIEDAPIWEQPAFLPIL 457


>gi|205373372|ref|ZP_03226176.1| flagellar MS-ring protein [Bacillus coahuilensis m4-4]
          Length = 504

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 167/353 (47%), Gaps = 22/353 (6%)

Query: 28  VILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPS 87
           V+L+ I+L +A  FF        LY  L  ++   I  +L    I   IS+ G++I VP+
Sbjct: 4   VVLLTILLIVAVTFFSTRTALVPLYSNLSPAETGSIKESLDSKGITSEISEGGTTILVPT 63

Query: 88  SMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSIS 147
            MV   ++ LA++GLP + S   Y  F +   FG+T     + ++ A++ E+A  I+SI 
Sbjct: 64  EMVDTLKVQLASEGLPKTGSID-YSFFSQNAGFGMTDNEFNVLKLDAMQTELALLIKSIE 122

Query: 148 GIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA----IRHLVAAAVPNLD 203
           G+  A V I +P+ G F     +  ++ ++    P  Y+  ++    + +LV+ +VPNL 
Sbjct: 123 GVQDASVMISLPEQGIFVNDQTQQASASIVLQTQPG-YQFEQSQISGLYNLVSKSVPNLP 181

Query: 204 MGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVV 263
             ++ +++   +      +  +    ++S    ++ +IE +I + + + LG     + VV
Sbjct: 182 TDNIVIMNQFFEYFELENVNNSSFAGNISSQMDVKKQIERDIQQQVQSMLGTLIGFNKVV 241

Query: 264 AELNMD---TQQIRE--IVYDPDSKVERSIRLSKDAQR-SETSQPESAVTVEQNMPHVSD 317
             ++ D   TQ+ RE  +V   D +    I +S  AQR +ET   E A      +P   D
Sbjct: 242 VSVSTDIDFTQEAREENLVVPVDEENLEGITMS--AQRITETFTGEGA-NAAGGVPAGED 298

Query: 318 RKVPLPRS-LENTD------KKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
               L  + + +TD      + EE  NYE++          YK+  + I V+V
Sbjct: 299 PADSLGTTYVGSTDGDGDYERIEETMNYEVSRVMKEIVESPYKVRDIGIQVMV 351


>gi|255523704|ref|ZP_05390670.1| flagellar M-ring protein FliF [Clostridium carboxidivorans P7]
 gi|296186708|ref|ZP_06855110.1| flagellar M-ring protein FliF [Clostridium carboxidivorans P7]
 gi|255512573|gb|EET88847.1| flagellar M-ring protein FliF [Clostridium carboxidivorans P7]
 gi|296048745|gb|EFG88177.1| flagellar M-ring protein FliF [Clostridium carboxidivorans P7]
          Length = 529

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 96/403 (23%), Positives = 180/403 (44%), Gaps = 39/403 (9%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           +I  +VI   I L +    +  S  YD L+  +  +D   +   L    +D ++   G+S
Sbjct: 28  IIFTAVIGALIYLGI----YFGSTKYDVLFSNMSSTDSAAVYKQLQADKVDAKV--QGNS 81

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP   V K R+ + ++ +  ++ + G+EL DK    G T    +I   RAL+GE+ RT
Sbjct: 82  ILVPKGQVDKLRMQMLSE-VNMTNGSQGFELLDKTK-LGSTDAEMKINYQRALQGELERT 139

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEAIRHLVAAAVP 200
           I+ +  I  ARV +V+PD   F K     +ASV ++        S   +A+  LV+ +V 
Sbjct: 140 IKGLPEIQNARVSLVLPDDTQFVKDTQPGSASVTLQMKQGQKLNSDQVKALVALVSGSVK 199

Query: 201 NLDMGDVTVLDSTGKLLTANEM--ERNILGKSLS-------IVQAIQHEIEMNINKALAA 251
           N+   +V ++D    LL+ +    +++I   S +       + Q  + E+E  ++  L A
Sbjct: 200 NVPKENVQIIDDKLALLSKDLFNDKKDITSDSTTSAEKQQELKQQYEKELEKKLSNMLEA 259

Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311
             G D  +  V A+L+ D  Q     YDP     +S+ +S+   +  ++  +   T    
Sbjct: 260 VYGKDKVKVKVNADLDFDAVQQDSTTYDP-----KSVVVSEHNVKDTSTGGQGTATSSSP 314

Query: 312 MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV 371
           + +             ++   E   NY+++     T      ++RL+ +V ++       
Sbjct: 315 VDNNMTNTTTNNTGNGSSTHDESTKNYDVSEVKQKTIKAPGAVKRLTASVALD------- 367

Query: 372 LGRSADQGKID-SYLAEINKIVSAATGINSRRGDTITITSMDF 413
                  G +D +    I+ +  +A G +++RGDTI +  + F
Sbjct: 368 -------GNVDPTTKTSISNLAVSAIGYDAKRGDTINVEGIPF 403


>gi|312876496|ref|ZP_07736479.1| flagellar M-ring protein FliF [Caldicellulosiruptor lactoaceticus
           6A]
 gi|311796707|gb|EFR13053.1| flagellar M-ring protein FliF [Caldicellulosiruptor lactoaceticus
           6A]
          Length = 560

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 102/391 (26%), Positives = 184/391 (47%), Gaps = 29/391 (7%)

Query: 15  TSLGRTRILIL---ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71
           +SL +++ ++L   +S+IL+ ++   AA +    PHY  ++  L+  +   I   LSE  
Sbjct: 17  SSLSKSQKIMLVVSSSIILLSVI---AAIYITTRPHYVTIFSGLDPKEAAEIQNILSEQK 73

Query: 72  IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131
           ID + ++ G++I V  + V +A++  A  G P +SS +  +     +S   T   +  T 
Sbjct: 74  IDSKAANGGTTILVRDTDVDRAKMAAAQAGYPKNSSITFEDALKLSSSMTATEADKRRTF 133

Query: 132 VRALEGEIARTIQSISGIVA-ARVHIVMPDMGSF--RKIGARPTASVMIRAINPSVYKSA 188
           ++  E EI   ++ +S  +  A V++ +P+  +F  +    +PTASV +           
Sbjct: 134 IKLKESEIQEALKQMSDYIEDAVVNLSVPEDYTFALKSEATKPTASVKLTLKKSLSSDQI 193

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNIN 246
           E I+  VAA+V  L   +V ++D+ G  L+ N  +    +  K L +  A ++EIE  + 
Sbjct: 194 EGIQRFVAASVEGLLPENVVIIDNKGNYLSENSSDSTEGLSSKQLQLKIATKNEIEKKVK 253

Query: 247 KALAAFLGV-DNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQRSETSQ- 301
           + L +++   ++ + +V  ++N D Q+I E  Y P   DS +  S + +K+  +S  S  
Sbjct: 254 ELLGSYVSSPEDVKVSVNLDMNFDMQKISETKYSPVLEDSGIVVSKKTTKEEAQSTNSSS 313

Query: 302 ---PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD----NYKL 354
              P +     QN P           +   TD   E  NY+ N K I T       NY  
Sbjct: 314 SGVPGTDTNPTQNTPQYPISSQGGQSTYTKTD---ETVNYQNNEKKIETIKAPGTINY-- 368

Query: 355 ERLSIAVVVNKG-RLTEVLGRSADQGKIDSY 384
           +  SIAVV+ +    T+     +DQ K  S+
Sbjct: 369 DNSSIAVVLYRYVTYTQEDFEKSDQAKTMSW 399


>gi|239996428|ref|ZP_04716952.1| flagellar MS-ring protein [Alteromonas macleodii ATCC 27126]
          Length = 564

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 100/415 (24%), Positives = 187/415 (45%), Gaps = 39/415 (9%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           R   L++  VI V I +F+    +   P Y  L  K+E  ++      +    ID+++  
Sbjct: 39  RQMALVVVLVICVAIAIFIL--IWSQEPDYRPL-AKMETQELIETLDYMDANQIDYKLE- 94

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR-ALEG 137
            G+ + V S      R+ +  QGL + +S++G ++  +   FG++  + E+ R++ A E 
Sbjct: 95  -GNIVYVRSDEFQNIRLGMTRQGL-TKASDAGTDIIMQDMGFGVSQRV-EMERLKHAREQ 151

Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLV 195
           +IA TI+ I+ I  ARV + MP    F +   + +A+V++ A   +V    E  A+  +V
Sbjct: 152 QIAATIEDIASIQKARVLLAMPKENVFARREKKASATVVLTAKRGAVIAGEEVDAVVDIV 211

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN--------INK 247
           A+AV N++   VTV DS G+LL +   +      S+S     ++EIE          I+ 
Sbjct: 212 ASAVQNMEPSKVTVTDSNGRLLNSGSQD------SMSARARKEYEIERQREQEYLEKIDA 265

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE--------- 298
            L   LG+ N+ +     ++    +  +  Y+PD    RS  + ++              
Sbjct: 266 ILIPVLGIGNYTAQADVTMDFTAMEQTQRSYNPDLPAVRSEMIMEENSVGGGVGGIPGAL 325

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
           ++QP     + +N    S + +P          KE   NYE++T    T      + RLS
Sbjct: 326 SNQPPLDSNIPENAVGGSQQTMP------GRTAKESTRNYELDTTISHTKKQTGVIRRLS 379

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           ++V V+  ++    G      +    +  I +++    G +  RGD++ + S+ F
Sbjct: 380 VSVAVDYTQVAGEDGAMTPTPRKQEEILNIRRLLQGGIGFDVTRGDSLEVVSVPF 434


>gi|138894740|ref|YP_001125193.1| flagellar MS-ring protein [Geobacillus thermodenitrificans NG80-2]
 gi|134266253|gb|ABO66448.1| Flagellar basal-body M-ring protein [Geobacillus
           thermodenitrificans NG80-2]
          Length = 527

 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 146/339 (43%), Gaps = 23/339 (6%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           FF        LY  L   +  +I   L    +   ++D G++I VP   V   ++ LAA+
Sbjct: 43  FFATRTEMVPLYSNLTPQEAGQIKATLDGRGVSAEVADGGTTIKVPKEQVDALKVELAAE 102

Query: 101 GLPSSSSNSG---YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
           G+P    NSG   Y  F +  SFG+T     + +++A++ E+A  +++I G+  A+V I 
Sbjct: 103 GIP----NSGVIDYSFFGQNASFGMTDNEFNMVKLKAMQTELANLMKTIDGVEDAKVMIN 158

Query: 158 MPDMGSF-RKIGARPTASVMIRAINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDST 213
           +P    F        +AS+++R   P    S E IR   HLVA +VPNL   ++ +++  
Sbjct: 159 LPQPSVFVSDEKGEASASIVLRT-KPGYQFSDEQIRALYHLVAKSVPNLSTDNIVIMNQF 217

Query: 214 GKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD---T 270
            +         N    + +  Q I+ +IE +I + +   LG    +  VV  +  D   T
Sbjct: 218 FEYFDLKNDSGNSTRATFASQQQIKKQIERDIQRQVQQMLGTMMGQDKVVVSVTADVDFT 277

Query: 271 QQIRE------IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPR 324
           Q+ RE      +  + D  +  S++  K+      + P        N       +     
Sbjct: 278 QEKREENLVAPVGEENDEGIAVSVQRIKETYAGSGAPPGGTAGTGTN--ETPGYQGASGA 335

Query: 325 SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
           +  N ++ EE  N E+N          YK+  L I V+V
Sbjct: 336 TNGNYERTEETINNEVNKIKKQIVESPYKIRDLGIQVMV 374


>gi|332140582|ref|YP_004426320.1| flagellar MS-ring protein [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550604|gb|AEA97322.1| flagellar MS-ring protein [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 564

 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 103/417 (24%), Positives = 193/417 (46%), Gaps = 43/417 (10%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           R   L++  VI V I +F+    +   P Y  L  K+E  ++      +    I++++  
Sbjct: 39  RQMALVVVLVICVAIAIFIL--IWSQEPDYRPL-AKMETQELIETLDYMDANQIEYKLE- 94

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR-ALEG 137
            G+++ V S      R+ +  QGL ++SS++G ++  +   FG++  + E+ R++ A E 
Sbjct: 95  -GNTVYVRSDEFQNIRLGMTRQGL-TNSSDAGTDIIMQDMGFGVSQRV-EMERLKHAREQ 151

Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLV 195
           +IA TI+ I+ I  ARV +  P    F +   + +A+V++ A   +V   + A+A+  +V
Sbjct: 152 QIAATIEDIASIQKARVLLATPKENVFARREKKASATVVLTAKRGAVIAGEEADAVVDIV 211

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN--------INK 247
           A+AV N++   VTV DS G+LL +   +      S+S     ++EIE          I+ 
Sbjct: 212 ASAVQNMEPSKVTVTDSNGRLLNSGSQD------SMSARARKEYEIERQREQEYLEKIDA 265

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREI--VYDPDSKVERSIRLSKDAQRSE------- 298
            L   LG+ N+ +   A++ MD   I +    Y+PD    RS  + ++            
Sbjct: 266 ILIPVLGIGNYTAQ--ADVAMDFTAIEQTQRSYNPDLPAVRSEMIVEENSVGGGVGGIPG 323

Query: 299 --TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
             ++QP     + +N    S + +P          KE   NYE++T    T      + R
Sbjct: 324 ALSNQPPLDSNIPENAVGGSQQTMP------GRTAKESTRNYELDTTISHTKKQTGVIRR 377

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           LS++V V+  ++    G      +    +  I +++    G +  RGD++ + S+ F
Sbjct: 378 LSVSVAVDYTQVAGEDGAMTPTPRKQEEILNIRRLLQGGIGFDVTRGDSLEVVSVPF 434


>gi|52080223|ref|YP_079014.1| flagellar MS-ring protein [Bacillus licheniformis ATCC 14580]
 gi|52785600|ref|YP_091429.1| flagellar MS-ring protein [Bacillus licheniformis ATCC 14580]
 gi|319645998|ref|ZP_08000228.1| FliF protein [Bacillus sp. BT1B_CT2]
 gi|52003434|gb|AAU23376.1| flagellar basal-body M-ring protein [Bacillus licheniformis ATCC
           14580]
 gi|52348102|gb|AAU40736.1| FliF [Bacillus licheniformis ATCC 14580]
 gi|317391748|gb|EFV72545.1| FliF protein [Bacillus sp. BT1B_CT2]
          Length = 533

 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 90/379 (23%), Positives = 173/379 (45%), Gaps = 25/379 (6%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           + I  ++  F+K+ + L +   ++L  ++ + ++L +      +S     LY  L   + 
Sbjct: 6   LQIKTKITDFWKNRSKLQK---ILLIGIVALAVILSIIIGIVASSNKMVPLYKDLSAEET 62

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +I   L E  I   ++ +GS I VP   V + ++ LAA+GLP S S   Y  F +   F
Sbjct: 63  GQIKQVLDEKGIPSEVATDGSVIKVPEEKVDELKVDLAAEGLPKSGSID-YSFFGENAGF 121

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG-ARPTASV-MIR 178
           G+T    ++ +V+A + E++  I+ I GI  ++V I +P    F  +G  +P AS  ++ 
Sbjct: 122 GMTDNEFDVLKVKATQTELSNLIKGIDGIKDSKVMINLPKESVF--VGEEKPEASASIVL 179

Query: 179 AINPS---VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ 235
            + P           + HLV+ +VPNLD  ++ ++D           E      S S  +
Sbjct: 180 QVKPGHTLDQNEINGLYHLVSKSVPNLDPKNIVIMDQNSTYYDQTGKESGSYADSYSSQR 239

Query: 236 AIQHEIEMNINKA----LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            ++ +IE ++ +     L   +G D    +V ++++   +   E + +P  K E    ++
Sbjct: 240 EVKAQIEKDLQRQIQTMLGTMMGQDKVVVSVTSDIDFTKENRTEDLVEPVDK-ENMEGIT 298

Query: 292 KDAQR-SETSQPESAV------TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKS 344
             A+R SET   + A       T E ++ + ++ +        + +K EE+ N E+N   
Sbjct: 299 VSAERVSETYSGQGAQAGGVNGTGENDVTNYAETEGGTGNG--DYEKSEERINNEVNRIH 356

Query: 345 IATTHDNYKLERLSIAVVV 363
                  YK+  L + V+V
Sbjct: 357 KEIAESPYKIRDLGVQVMV 375


>gi|312792647|ref|YP_004025570.1| flagellar m-ring protein flif [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312179787|gb|ADQ39957.1| flagellar M-ring protein FliF [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 560

 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 99/381 (25%), Positives = 178/381 (46%), Gaps = 26/381 (6%)

Query: 22  ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81
           +++ +S+IL+ ++   AA +    PHY  ++  L+  +   I   LSE  ID + ++ G+
Sbjct: 27  LVVSSSIILLSVI---AAIYITTRPHYVTIFSGLDPKEAAEIQNILSEQKIDSKAANGGT 83

Query: 82  SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
           +I V  + V +A++  A  G P +SS +  +     +S   T   +  T ++  E EI  
Sbjct: 84  TILVRDTDVDRAKMAAAQAGYPKNSSITFEDALKLSSSMTATEADKRRTFIKLKESEIQE 143

Query: 142 TIQSISGIVA-ARVHIVMPDMGSF--RKIGARPTASVMIRAINPSVYKSAEAIRHLVAAA 198
            ++ +S  +  A V++ +P+  +F  +    +PTASV +           E I+  VAA+
Sbjct: 144 ALKQMSDYIEDAVVNLSVPEDYTFALKSEATKPTASVKLTLKKSLSSDQIEGIQRFVAAS 203

Query: 199 VPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNINKALAAFLGV- 255
           V  L   +V ++D+ G  L+ N  +    +  K L +  A ++EIE  + + L +++   
Sbjct: 204 VEGLLPENVVIIDNKGNYLSENSSDSTEGLSSKQLQLKIATKNEIEKKVKELLGSYVSSP 263

Query: 256 DNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQRSETSQ----PESAVTV 308
           ++ + +V  ++N D Q+I E  Y P   DS +  S + +K+  +S  S     P +    
Sbjct: 264 EDVKVSVNLDMNFDMQKISETKYSPVLEDSGIVVSKKTTKEEAQSTNSSSSGVPGTDTNP 323

Query: 309 EQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD----NYKLERLSIAVVVN 364
            QN P           +   TD   E  NY+ N K I T       NY  +  SIAVV+ 
Sbjct: 324 TQNTPQYPISSQGGQSTYTKTD---ETVNYQNNEKKIETIKAPGTINY--DNSSIAVVLY 378

Query: 365 KG-RLTEVLGRSADQGKIDSY 384
           +    T+     +DQ K  S+
Sbjct: 379 RYVTYTQEDFEKSDQAKTMSW 399


>gi|120598250|ref|YP_962824.1| flagellar MS-ring protein [Shewanella sp. W3-18-1]
 gi|146293672|ref|YP_001184096.1| flagellar MS-ring protein [Shewanella putrefaciens CN-32]
 gi|120558343|gb|ABM24270.1| flagellar M-ring protein FliF [Shewanella sp. W3-18-1]
 gi|145565362|gb|ABP76297.1| flagellar M-ring protein FliF [Shewanella putrefaciens CN-32]
          Length = 560

 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 100/431 (23%), Positives = 192/431 (44%), Gaps = 36/431 (8%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  L  K+E  ++ ++   L +  I ++I  +   I VP     + ++ L+  
Sbjct: 53  LWAQEPEYRPLG-KMETQEMVQVLDVLDKNKIKYQIEVD--VIKVPEDKYQEVKLMLSRA 109

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           G+   +++  +   D  + FG++  M++     + E  +AR I+ +  +  A+V + +P 
Sbjct: 110 GIDGGTTSKDFLTQD--SGFGVSQRMEQARLKHSQEENLARAIEQLQSVSRAKVILALPK 167

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
              F +  ++P+A+V+I      + +   +AI  +VA+AV  L+   VTV DS G+LL +
Sbjct: 168 ENVFARNTSQPSATVVINTRRGGLGQGEVDAIVDIVASAVQGLEPSRVTVTDSNGRLLNS 227

Query: 220 NEME--RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
              +       + L +VQ  + E    I   L   LG DNF S V  +++MD   + +  
Sbjct: 228 GSQDGVSARARRELELVQQKEAEYRTKIESILVPILGPDNFTSQV--DVSMDFTAVEQTA 285

Query: 278 --YDPDSKVERSIRLSKDAQRSE-TSQPESAVTVEQNMPHVSDRKVPL----PRSLENTD 330
             ++PD            A RSE T +  S       +P     + P+    P    N  
Sbjct: 286 KRFNPDLP----------ALRSEMTVENNSTGGTTGGIPGALSNQPPMESDIPEDATNAS 335

Query: 331 KK--------EEQSNYEINTKSIATTHDNYKLERLSIAVVVN-KGRLTEVLGRSADQGKI 381
           +K        E   N+E++T    T      + R+S++V V+ K    +  G+ A   + 
Sbjct: 336 EKVVAGNSHREATRNFELDTTISHTRQQIGVVRRISVSVAVDFKPGAADENGQVARVART 395

Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441
           +  L  I +++  A G +++RGD + + ++ F++  + +  + ++       R     + 
Sbjct: 396 EQELTNIRRLLEGAVGFSTQRGDVLEVVTVPFMDQLMEDIPSPELWEQPWFWRAVKLGVG 455

Query: 442 ALVFLVGTLLV 452
           ALV LV  L V
Sbjct: 456 ALVILVLILAV 466


>gi|170725973|ref|YP_001759999.1| flagellar MS-ring protein [Shewanella woodyi ATCC 51908]
 gi|169811320|gb|ACA85904.1| flagellar M-ring protein FliF [Shewanella woodyi ATCC 51908]
          Length = 568

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 100/471 (21%), Positives = 210/471 (44%), Gaps = 40/471 (8%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
            G  + R   ++LA  I + + +F+    +   P +  L  K+   D+ ++   L +  +
Sbjct: 31  GGVDMLRQVTMVLALAICLAVAVFVM--LWAQEPEFRPLG-KMATEDMIQVLDVLDKNKV 87

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
            ++I   G  + VP     + ++ L+ +G+ S+S+++ Y    + + FG++  M++    
Sbjct: 88  AYKIE--GDVVKVPEEKYQEVKLMLSREGVDSASNSTDY--LSQDSGFGVSQRMEQARLK 143

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV-YKSAEAI 191
            + E  +AR I+ +  +  A+V + +P    F +  ++P+A+V+I A    +  +  ++I
Sbjct: 144 HSQELNLARAIEELRSVTRAKVILAIPKENVFARNRSKPSATVVISARRAGLGQEEVDSI 203

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNINKAL 249
             +VA+AV  L+   VTV DS G+LL +   +       + L +VQ  + E    +   L
Sbjct: 204 VDIVASAVQGLEPTRVTVTDSNGRLLNSGSQDGVSARARRELELVQQKESEYRNKVESIL 263

Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIV--YDPDSKVERSIRLSKDAQRSE--------- 298
              LG +NF S V  +++MD   + +    ++PD    RS    +++  S          
Sbjct: 264 MPILGPENFTSQV--DVSMDFTAVEQTAKRFNPDLPALRSEMTVENSSNSGAIGGIPGAL 321

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
           ++QP     + QN     D +         +  KE   N+E++T     +H   ++  + 
Sbjct: 322 SNQPPMEANIPQN---ALDGEQSEANKNPGSSHKEATRNFELDT---TISHTRQQIGVVR 375

Query: 359 IAVVVNKGRLTEVLGRSADQGKI------DSYLAEINKIVSAATGINSRRGDTITITSMD 412
              V          G + + G++      D  +A I +++  A G +++RGD I + ++ 
Sbjct: 376 RVSVSVAVDFKP--GPAGEDGQVNRVPRTDQEMANIRRLLEGAVGFSTQRGDVIEVVTVP 433

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
           F++  +  +   ++       R     +  LV L    L+ F+    L++L
Sbjct: 434 FMDQLIDEAPAPELWEQPWFWRAIKLAMGGLVILA---LILFIVRPMLKKL 481


>gi|283856295|ref|YP_162369.2| flagellar M-ring protein FliF [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|283775291|gb|AAV89258.2| flagellar M-ring protein FliF [Zymomonas mobilis subsp. mobilis
           ZM4]
          Length = 619

 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 126/241 (52%), Gaps = 10/241 (4%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           F +++P   +LY     +D   I+ AL    I + I+     I+V      KAR+ LA Q
Sbjct: 71  FLLSAPPQRDLYPGAGDADRASIASALETGGIHYNINRGNGVITVSEKDYYKARMLLAQQ 130

Query: 101 GLPSSSSNSGYELFDKVNSFGL-TSFMQEITRVRAL-EGEIARTIQSISGIVAARVHIVM 158
           GLP S+ +  +     ++S  L  S   E  R+RA  E ++ARTI++I  +  ARVHI  
Sbjct: 131 GLPKSAPDGDH----VISSLPLGASRAVEGERLRAAREVDLARTIETIDVVNQARVHIAE 186

Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           P    F +     TASVM++ +      +A  +AI++LVAA+VP +    V+V+D  G L
Sbjct: 187 PQPSPFVREQVHGTASVMLKLMTGRNLSNAQVQAIQNLVAASVPGMAPEAVSVVDQAGHL 246

Query: 217 LTA-NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM-DTQQIR 274
           L+A +  + +I  + L + Q ++      +NK L   LG +N+ + V  +L+  ++Q  R
Sbjct: 247 LSATSNADNDINDRQLRLQQTVEARYMDALNKLLVPLLGENNYTAEVHTDLDFTESQATR 306

Query: 275 E 275
           E
Sbjct: 307 E 307



 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/113 (23%), Positives = 59/113 (52%), Gaps = 12/113 (10%)

Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS--YLAEINKIVSAA 395
           YE+  +     +    ++R+S+A+ +          R  + GK  S   +A++ K++  A
Sbjct: 418 YELGREVSVIRNPTGSVKRVSVAIAL----------RQINHGKPPSPEQVAQLEKLIKGA 467

Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            G ++ RGD + I+S DF+   +F+    Q S++ +L+R+ + ++ A + + G
Sbjct: 468 IGFDASRGDVVAISSSDFMGGSVFSMPWYQNSWVPLLARNLSALLVAALVIFG 520


>gi|15615021|ref|NP_243324.1| flagellar MS-ring protein [Bacillus halodurans C-125]
 gi|10175078|dbj|BAB06177.1| flagellar basal-body M-ring protein [Bacillus halodurans C-125]
          Length = 525

 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 164/373 (43%), Gaps = 39/373 (10%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           FF    HY  LY  L + +   I   L    I   I+++G++I VP + V   ++ LAA+
Sbjct: 43  FFSTRTHYVPLYSNLTLQETGNIKETLDARGISSEIANDGTTILVPETQVDALKVELAAE 102

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP S + + Y  F     FG+T     +    A+E E+A  I+S+ G+  A V I +P+
Sbjct: 103 GLPQSGTIN-YSTFRDSMGFGMTDNEFSLMERAAIESELADLIRSVDGVNQANVMITLPE 161

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLD------ 211
              +     +   + ++  + P     A  +R   HLV+ +VPNL + ++ +++      
Sbjct: 162 QTLWVSDSQQEATASVVVDLAPGFQLDASQVRALYHLVSRSVPNLPIENIVIMNQMFEDY 221

Query: 212 ------STGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE 265
                 STG  L+  E +R       +I + I+ ++  N+ + L   +G D    +V  +
Sbjct: 222 LYDDHHSTGSTLSVYEQQR-------AIQRDIERDLTRNLQQMLGTLVGRDKVLVSVTTD 274

Query: 266 LNMDTQQIREIVYDP-DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPR 324
           ++   +  +E   +P D +    I +S +   +ET   E   T E  +  V D     P 
Sbjct: 275 IDFTQENRQEERVEPVDEENMEGIAVSVE-NITETYSGEG--TPEGGIEGVGDDIPNFPG 331

Query: 325 SLE----NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380
                  + +  E++ NYE+N          YK+  L I V+V      E L   AD+  
Sbjct: 332 VYGTGEVDYELTEDRINYEVNRIRSDIVESPYKIRDLGIQVMVEPPEGMEEL--PADR-- 387

Query: 381 IDSYLAEINKIVS 393
               LA+I +I+ 
Sbjct: 388 ----LADIQQILG 396


>gi|319427071|gb|ADV55145.1| flagellar M-ring protein FliF [Shewanella putrefaciens 200]
          Length = 560

 Score = 90.5 bits (223), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 100/431 (23%), Positives = 191/431 (44%), Gaps = 36/431 (8%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  L  K+E  ++ ++   L +  I ++I  +   I VP     + ++ L+  
Sbjct: 53  LWAQEPEYRPLG-KMETQEMVQVLDVLDKNRIKYQIEVD--VIKVPEDKYQEVKLMLSRA 109

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           G+   +++  +   D  + FG++  M++     + E  +AR I+ +  +  A+V + +P 
Sbjct: 110 GIDGGTTSKDFLTQD--SGFGVSQRMEQARLKHSQEENLARAIEQLQSVSRAKVILALPK 167

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
              F +  ++P+A+V+I      + +   +AI  +VA+AV  L+   VTV DS G+LL +
Sbjct: 168 ENVFARNTSQPSATVVINTRRGGLGQGEVDAIVDIVASAVQGLEPSRVTVTDSNGRLLNS 227

Query: 220 NEME--RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
              +       + L +VQ  + E    I   L   LG DNF S V  +++MD   + +  
Sbjct: 228 GSQDGVSARARRELELVQQKEAEYRTKIESILVPILGPDNFTSQV--DVSMDFTAVEQTA 285

Query: 278 --YDPDSKVERSIRLSKDAQRSE-TSQPESAVTVEQNMPHVSDRKVPL----PRSLENTD 330
             ++PD            A RSE T +  S       +P     + P+    P    N  
Sbjct: 286 KRFNPDLP----------ALRSEMTVENNSTGGTTGGIPGALSNQPPMESDIPEDATNAS 335

Query: 331 KK--------EEQSNYEINTKSIATTHDNYKLERLSIAVVVN-KGRLTEVLGRSADQGKI 381
           +K        E   N+E++T    T      + R+S++V V+ K    +  G+ A   + 
Sbjct: 336 EKVVAGNSHREATRNFELDTTISHTRQQIGVVRRISVSVAVDFKPGAADENGQVARVART 395

Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441
           +  L  I +++  A G +++RGD + + ++ F++  + +    ++       R     + 
Sbjct: 396 EQELTNIRRLLEGAVGFSTQRGDVLEVVTVPFMDQLMEDIPAPELWEQPWFWRAVKLGVG 455

Query: 442 ALVFLVGTLLV 452
           ALV LV  L V
Sbjct: 456 ALVILVLILAV 466


>gi|149182503|ref|ZP_01860976.1| flagellar M-ring protein [Bacillus sp. SG-1]
 gi|148849763|gb|EDL63940.1| flagellar M-ring protein [Bacillus sp. SG-1]
          Length = 529

 Score = 90.1 bits (222), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 133/280 (47%), Gaps = 15/280 (5%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +QL  F+ + T   +    + A VI++ I +     F     +   LY  L  S+   I 
Sbjct: 11  EQLNTFWSARTKKQKGMYGVAALVIILAIAV---TGFLSTRTNLVPLYSNLAPSETGSIK 67

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L    I   I+D GS+I VPS MV   ++ LAA+G+P+S S   Y  F +   FG+T 
Sbjct: 68  ENLDGRGIVSEITDGGSTIMVPSEMVDTLKVELAAEGIPNSGSID-YSFFSQNAGFGMTD 126

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
               + ++ A++ E+A  ++ I G+  A V I +P+ G F        ++ ++    P  
Sbjct: 127 NEFNVMKLDAMQTELANLMKGIEGVQDANVMITLPEKGVFISDAVEQASASIVLNTKPGF 186

Query: 185 ---YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQA--IQH 239
               K  +++ HLV+ +VP+L   ++ +++   +L    EME        ++VQ   I+ 
Sbjct: 187 NFDQKQIKSLYHLVSKSVPDLPTDNIVIMN---QLFEYFEMENENSSFGGTVVQQMDIKD 243

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMD---TQQIREI 276
            +E +I K + + LG     + VV  +  D   TQ+ RE+
Sbjct: 244 RVEKDIQKQVQSMLGTLIGFNKVVVSVTTDIDFTQENREV 283


>gi|296330835|ref|ZP_06873310.1| flagellar MS-ring protein [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305674353|ref|YP_003866025.1| flagellar basal-body M-ring protein [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296151840|gb|EFG92714.1| flagellar MS-ring protein [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305412597|gb|ADM37716.1| flagellar basal-body M-ring protein [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 531

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 170/379 (44%), Gaps = 25/379 (6%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M + ++  +F+K+ + L +   +++ S +   I++ +    F +S     LY  L   + 
Sbjct: 1   MQMKNKTSEFWKNRSKLQK---ILMISALAAIIIIGIIISVFASSSKMAPLYKDLSAEEA 57

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +I   L    +   +S+ G+ ISVP   V   ++ +AA+GLP + S   Y  F +   F
Sbjct: 58  GQIKEELDAKKVPNELSNGGTVISVPEDQVDSLKVQMAAEGLPKTGS-IDYSFFGQNAGF 116

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLT    ++ +V+A + E++  I  + GI  ++V I +P    F        ++ ++  I
Sbjct: 117 GLTDNEFDMVKVKATQTELSNLINEMDGIKNSKVMINLPKDAVFVGEEQSAASASIVLQI 176

Query: 181 NPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI 237
            P        I    HLV+ +VPNL   ++ ++D        ++ +      S S  Q I
Sbjct: 177 QPGYTLEQSQINGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSDSDAGSYADSYSSQQGI 236

Query: 238 QHEIEMNINKALAAFLGV----DNFRSAVVAELNMDTQQIREIVYDP-DSKVERSIRLSK 292
           + ++E +I K + + LG     D    +V A+++   +   E + +P D +    I +S 
Sbjct: 237 KSQVEKDIQKHVQSLLGTMMGQDKVVVSVTADIDFTKENRTEDIVEPVDKENMEGIAVSA 296

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVP-LPRSLENT-----DKKEEQSNYEINT--KS 344
           + + SET Q + A           D  V       ENT     +K   + NYE+N   K 
Sbjct: 297 E-KVSETYQGDGAAN--GGTAGTGDEDVTNYEADGENTESGNYEKSSNKINYEVNRIHKE 353

Query: 345 IATTHDNYKLERLSIAVVV 363
           IA +   YK+  L I V+V
Sbjct: 354 IAESP--YKVRDLGIQVMV 370


>gi|306820113|ref|ZP_07453761.1| flagellar M-ring protein FliF [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304551891|gb|EFM39834.1| flagellar M-ring protein FliF [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 521

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 91/402 (22%), Positives = 191/402 (47%), Gaps = 34/402 (8%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           + +I+ +   I+V +++ ++   +     Y  LY  L+++ +++++ +L    + +++ D
Sbjct: 23  KKQIITVGISIVVILIVMVSMIMYFTRTKYVTLYSNLDLNTMSKVTQSLDSMGVQYKV-D 81

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS-FMQE----ITRVR 133
           + +SISVP S   K  I LA Q +P++        FD  N   + S FM +      +  
Sbjct: 82  SQNSISVPESSRNKIMIDLAGQNIPNAK-------FDFSNLINMNSMFMSDDEKNTAKQY 134

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMI--RAINPSVYKSAE 189
           AL  +I+  I+SI  +  A+V + +P    F   +   +P ASVM+  ++ +     S  
Sbjct: 135 ALTNQISSIIESIPAVEKAQVTLAIPKNSEFVLSENKQQPKASVMLILKSGSQLSQDSIN 194

Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIVQAIQHEIEMNIN 246
            I  +VA +V  L+  +VT+    G++L  N   +N     G +L + + ++ +IE ++ 
Sbjct: 195 GIASMVAGSVEGLEPQNVTIHGPNGQILNQNSTGQNANMQTGTNLEMQEKVKRDIENSLQ 254

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES-- 304
             LA   G +NF   V  +LN D +  +   + P  + E S  +  + Q+ E  + ++  
Sbjct: 255 NFLAPMFGYNNFSVMVSVKLNFDNETTQTKTFAPPVEGETSGLVRSEQQQKEQVENKNNA 314

Query: 305 ----AVTVEQNMPHVSDRKVPLPRSLENT-DKKEEQSNYEINTKSIATTHDNYKLERLSI 359
                VT   N    +   V +  +  ++ ++ E   NYE+N            ++ +++
Sbjct: 315 LGTPGVTSNNNEAGGTTNYVTVDENGNSSYNRSESTVNYELNEIVKNVEKARGTIDSVTV 374

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR 401
           +V++NK  L    G  +D+ +      +I  +++ ATG++++
Sbjct: 375 SVILNKDTLEG--GELSDEKR-----TQIVNLITTATGLDTK 409


>gi|302874589|ref|YP_003843222.1| flagellar M-ring protein FliF [Clostridium cellulovorans 743B]
 gi|307690800|ref|ZP_07633246.1| flagellar MS-ring protein [Clostridium cellulovorans 743B]
 gi|302577446|gb|ADL51458.1| flagellar M-ring protein FliF [Clostridium cellulovorans 743B]
          Length = 522

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 108/464 (23%), Positives = 204/464 (43%), Gaps = 45/464 (9%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
            F   + + +  I ++ +V++V I+  +          Y  L+  L+ +D   I   L E
Sbjct: 14  IFNGMSKVRKISIGLITAVVIVAIVALI---ITTGKTKYTALFNNLDATDSQNIVTKLKE 70

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
             I +++ ++ ++I VP   VG+ R+  AA      S + G E+FD  +  G++     +
Sbjct: 71  EGIPYKVENSTNTIMVPDEQVGQLRLQYAAD---IKSGSIGLEIFDTSSQLGISDAEFNV 127

Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE 189
              RAL+GEI RT++S   +  A+V+IV+P+  +F K  A  + S+ ++ + P    S E
Sbjct: 128 KYQRALQGEIERTVKSFEQVEDAKVNIVLPEDSTFVKDTAPASVSITLK-LKPGTELSEE 186

Query: 190 ---AIRHLVAAAVPNLDMGDVTVLDS-----TGKLLTANEMERNILGKSLSIVQAIQHE- 240
              AI  LV+ +V NL   ++ ++D+     T KL   +E E ++   S  + + ++ E 
Sbjct: 187 QVKAIVSLVSTSVKNLPKENIQIVDNNMRLLTDKLFKGSEDESSVTA-STQLEEKMKFED 245

Query: 241 -IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK-VERSIRL-SKDAQRS 297
            +E  I   L    G    ++ V A LN D+        D     V ++I + + DA  +
Sbjct: 246 YLEEKILSQLEPMYGQGKVKANVNAVLNFDSVSTETTTVDKTPPIVSQNISINASDANNT 305

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLER 356
             + P     V+ N+ +V +  +       N     + +NY  + K I    +    +  
Sbjct: 306 TGNSP-----VDNNLSNVINEYMQNG----NISSANQTTNYSTDGKVIERKQNALGNVTA 356

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           +S AV ++   LTE              LA++ K+V+   G   +  D   + + +F  N
Sbjct: 357 VSAAVAIDNAELTE------------RQLADVKKLVNKTIGQAKQNEDETIVMAYEF--N 402

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460
               + ++Q S  ++ +   A     L  ++G      +GL A 
Sbjct: 403 PELKA-SIQKSLEEMEAAQKAEAQKKLYTMIGLGAAVVIGLVAF 445


>gi|312621568|ref|YP_004023181.1| flagellar m-ring protein flif [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312202035|gb|ADQ45362.1| flagellar M-ring protein FliF [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 560

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 97/379 (25%), Positives = 178/379 (46%), Gaps = 28/379 (7%)

Query: 5   DQLLQFFKSGTSLGRTRILIL---ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           D L    +  +SL +++ ++    +S+IL+ +++   A +    PHY  ++  L+  +  
Sbjct: 7   DYLKNIKEKWSSLSKSQKIMFVVSSSIILLSVIV---AIYITTRPHYVTIFSGLDPKEAA 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   LS+  ID + ++ G++I V    V +A++  A  G P +SS +  +     +S  
Sbjct: 64  EIQNILSDQKIDSKAANGGTTILVRDKDVDRAKMAAAQAGYPKNSSITFEDALKLSSSMT 123

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVA-ARVHIVMPDMGSF--RKIGARPTASVMIR 178
            T   +  T ++  E EI + ++ +S  +  A V++ +P+  +F  +    +PTASV + 
Sbjct: 124 ATETDKRRTFIKLKESEIQQALKQMSDYIEDAVVNLSIPEDYTFALKSEAEKPTASVKLT 183

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQA 236
                     E I+  VAA+V  L   +V ++D+ G  L+ N  +    +  K L +  A
Sbjct: 184 LKKSLSSDQIEGIQRFVAASVEGLLPENVVIIDNKGNYLSDNSSDTTEGLSSKQLQLKIA 243

Query: 237 IQHEIEMNINKALAAFLGV-DNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSK 292
            ++EIE  I + L +++   ++ + +V  ++N D Q+I E  Y P   DS +  S + +K
Sbjct: 244 TKNEIEKKIKELLGSYVSSPEDVKVSVNLDMNFDMQKISETKYSPVLEDSGIVVSKKTTK 303

Query: 293 DAQRSETSQ----PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           +  +S  S     P +     QN P           +   TD   E  NY+ N K I T 
Sbjct: 304 EEAQSTNSSSSGVPGTDTNPTQNAPQYPITSQGGQSTYTKTD---ETVNYQNNEKKIETI 360

Query: 349 HD----NYKLERLSIAVVV 363
                 NY  ++ SIAVV+
Sbjct: 361 KAPGTINY--DKSSIAVVL 377


>gi|241761170|ref|ZP_04759259.1| flagellar M-ring protein FliF [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|241374789|gb|EER64250.1| flagellar M-ring protein FliF [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
          Length = 619

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 126/241 (52%), Gaps = 10/241 (4%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           F +++P   +LY     +D   I+ AL    I + I+     I+V      KAR+ LA Q
Sbjct: 71  FLLSAPPQRDLYPGAGDADRASIASALETGGIHYNINRGNGVITVSEKDYYKARMLLAQQ 130

Query: 101 GLPSSSSNSGYELFDKVNSFGL-TSFMQEITRVRAL-EGEIARTIQSISGIVAARVHIVM 158
           GLP S+ +  +     ++S  L  S   E  R+RA  E ++ARTI++I  +  ARVHI  
Sbjct: 131 GLPKSAPDGDH----VISSLPLGASRAVEGERLRAAREVDLARTIETIDVVNQARVHIAE 186

Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           P    F +     TASVM++ +      +A  +AI++LVAA++P +    V+V+D  G L
Sbjct: 187 PQPSPFVREQVHGTASVMLKLMTGRNLSNAQVQAIQNLVAASLPGMAPEAVSVVDQAGHL 246

Query: 217 LTA-NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM-DTQQIR 274
           L+A +  + +I  + L + Q ++      +NK L   LG +N+ + V  +L+  ++Q  R
Sbjct: 247 LSATSNADNDINDRQLRLQQTLEARYMDALNKLLVPLLGENNYTAEVHTDLDFTESQATR 306

Query: 275 E 275
           E
Sbjct: 307 E 307



 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/113 (23%), Positives = 59/113 (52%), Gaps = 12/113 (10%)

Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS--YLAEINKIVSAA 395
           YE+  +     +    ++R+S+A+ +          R  + GK  S   +A++ K++  A
Sbjct: 418 YELGREVSVIRNPTGSVKRVSVAIAL----------RQINHGKPPSPEQVAQLEKLIKGA 467

Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            G ++ RGD + I+S DF+   +F+    Q S++ +L+R+ + ++ A + + G
Sbjct: 468 IGFDASRGDVVAISSSDFMGGSVFSMPWYQNSWVPLLARNLSALLVAALVIFG 520


>gi|85710179|ref|ZP_01041244.1| flagellar M-Ring protein [Erythrobacter sp. NAP1]
 gi|85688889|gb|EAQ28893.1| flagellar M-Ring protein [Erythrobacter sp. NAP1]
          Length = 547

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 125/436 (28%), Positives = 201/436 (46%), Gaps = 50/436 (11%)

Query: 24  ILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV--ALSEANIDFRISDNGS 81
           + A V L+ +++  A  F +       LY  L  SDV R  V  AL    I + I ++  
Sbjct: 44  LAALVGLIAVVVAGALYFAIAQGPQRILYSDL--SDVERAKVVQALETGGIGYAIDNSTG 101

Query: 82  SISVPSSMVGKARIHLAAQ-GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR-ALEGEI 139
           +I+V  + + +AR+ +A+  GL +    S   + D +   G +S   E  R+R A E E+
Sbjct: 102 AITVAETDLYRARMLVASDTGLAAPEGASA--MLDAI-PLG-SSRTLEGERLRLAREREL 157

Query: 140 ARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP-SVYKS-AEAIRHLVAA 197
             TI+ I GI + RVH+  P+  +F +    P+ASVM+R ++  S+ +S  EAI +LV+ 
Sbjct: 158 MLTIREIDGIESVRVHLATPERSAFVRENNPPSASVMVRLVSGRSLGRSQVEAIVNLVSG 217

Query: 198 AVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDN 257
           +VP L    V V+D  G+LL+A   E   LG  L + +  + ++   +   LA  LG  N
Sbjct: 218 SVPGLTPDKVRVVDQNGRLLSAAREE--ALG-GLVLQREFEAKLREQLGTLLAPLLGEGN 274

Query: 258 FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV----TVEQNMP 313
           F S V  EL  +        YD      R   +  +++RS T     AV     V  N P
Sbjct: 275 FSSQVQVELEQEESTSARESYD------REGVIRSESERSATRMAGGAVGGIPGVAANTP 328

Query: 314 HVSDRKVPLPRSL------ENTDKKEE---QSNYEINTKSIATTHDNYKLERLSIAVVVN 364
               + V  P         +  D+ +E   Q NYE+  +   T+     L +LS+AV V+
Sbjct: 329 PPDAQLVDGPPEATAVDGEQAADRDQEVSTQRNYELGREVAVTSTRPGGLVKLSVAVAVS 388

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424
              L      +A+Q         +  ++SAA G +  RGDT+ +    F      N+ T 
Sbjct: 389 DAALAAAAPMTAEQ---------LQSLISAAVGADEGRGDTVEVVVSAF-----ENAQTQ 434

Query: 425 QVSFMDILSRHFATVI 440
            ++F +   + FA V+
Sbjct: 435 PLAFYE--QKWFADVL 448


>gi|222530139|ref|YP_002574021.1| flagellar M-ring protein FliF [Caldicellulosiruptor bescii DSM
           6725]
 gi|222456986|gb|ACM61248.1| flagellar M-ring protein FliF [Caldicellulosiruptor bescii DSM
           6725]
          Length = 560

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 93/359 (25%), Positives = 170/359 (47%), Gaps = 25/359 (6%)

Query: 22  ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81
            ++ +S+IL+ +++   A +    PHY  ++  L+  +   I   LS+  ID + ++ G+
Sbjct: 27  FVVSSSIILLSVIV---AIYITTRPHYITIFSGLDPKEAAEIQNILSDQKIDSKAANGGT 83

Query: 82  SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
           +I V  + V +A++  A  G P +SS +  +     +S   T   +  T ++  E EI +
Sbjct: 84  TILVRDTDVDRAKMAAAQAGYPKNSSITFEDALKLSSSMTATEADKRRTFIKLKESEIQQ 143

Query: 142 TIQSISGIVA-ARVHIVMPDMGSF--RKIGARPTASVMIRAINPSVYKSAEAIRHLVAAA 198
            ++ +S  +  A V++ +P+  +F  +    +PTASV +           E I+  VAA+
Sbjct: 144 ALKQMSDYIEDAVVNLSIPEDYTFALKSEAEKPTASVKLTLKKSLSSDQIEGIQRFVAAS 203

Query: 199 VPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV- 255
           V  L   +V ++D+ G  L+ N  +    +  K L +  A ++EIE  I + L +++   
Sbjct: 204 VEGLLPENVVIIDNKGNYLSDNSSDTTEGLSSKQLQLKIATKNEIEKKIKELLGSYVSSP 263

Query: 256 DNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQRSETSQ----PESAVTV 308
           ++ + +V  ++N D Q+I E  Y P   DS +  S + +K+  +S  S     P +    
Sbjct: 264 EDVKVSVNLDMNFDMQKISETKYSPVLEDSGIVVSKKTTKEEAQSTNSSSSGVPGTDTNP 323

Query: 309 EQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD----NYKLERLSIAVVV 363
            QN P           +   TD   E  NY+ N K I T       NY  ++ SIAVV+
Sbjct: 324 TQNAPQYPITSQGGQSTYTKTD---ETVNYQNNEKKIETIKAPGTINY--DKSSIAVVL 377


>gi|260776484|ref|ZP_05885379.1| flagellar M-ring protein FliF [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607707|gb|EEX33972.1| flagellar M-ring protein FliF [Vibrio coralliilyticus ATCC BAA-450]
          Length = 582

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 93/422 (22%), Positives = 193/422 (45%), Gaps = 40/422 (9%)

Query: 19  RTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76
           R  +L+L+  I V   +MLF    F+V  P    L    +  ++  +   L +  +++++
Sbjct: 55  RQVVLVLSISICVALIVMLF----FWVREPEMRPLGA-YDTEELIPVLDYLDQEKVEYKL 109

Query: 77  SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136
             +G++ISVP+S     ++++   GL ++   +G E+  +   FG++  +++     + E
Sbjct: 110 --DGNTISVPASDYNSLKLNMVRAGL-NNERQAGDEILMQDMGFGVSQRLEQERLKLSRE 166

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHL 194
            ++A+ I+ +  +  ARV + +P    F +     +ASV +     +  K  E  ++  +
Sbjct: 167 RQLAKAIEEMKQVRKARVLLALPKQSVFVRHNQEASASVFLTLRTGTSLKQEEVDSVVDM 226

Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN--------IN 246
           VA+AVP +    +TV D  G+LL++   +      + S  +  +HE+E          I+
Sbjct: 227 VASAVPGMKPTRITVTDQHGRLLSSGSQD------AASAARRKEHELERKQEQALRDKID 280

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE-------- 298
             L   LG  N+ + V  +L+    +     +DP++   RS    +D             
Sbjct: 281 SVLIPILGFGNYTAQVDIQLDFSAIEQTRKSFDPNTPSTRSEYTLEDYNNGNVVAGVPGA 340

Query: 299 -TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
            ++QP +  ++ Q++  + D  +    S+     KE   N+E++T        +  + R 
Sbjct: 341 LSNQPPADASIPQDVAQMKDGSLMGQGSVH----KEATRNFELDTTISHERRQSGIVNRQ 396

Query: 358 SIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           ++AV + N+  +    G +  Q   D+ L  I +++  A G +  RGD + + SM F E 
Sbjct: 397 TVAVAIKNRASVNPDTGETTYQPLSDAELQSIRQVLIGAVGFSESRGDLLNVLSMQFAEP 456

Query: 417 QL 418
           ++
Sbjct: 457 EV 458


>gi|302872571|ref|YP_003841207.1| flagellar M-ring protein FliF [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302575430|gb|ADL43221.1| flagellar M-ring protein FliF [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 560

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 161/342 (47%), Gaps = 18/342 (5%)

Query: 37  MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIH 96
           +AA +    PHY  ++  L+  +   I   LSE  ID + ++ G++I V  + V +A++ 
Sbjct: 39  IAAIYITTRPHYVTIFSGLDPKEAAEIQNILSEQKIDSKAANGGTTILVRDTDVDRAKMA 98

Query: 97  LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVA-ARVH 155
            A  G P +SS +  +     +S   T   +  T ++  E EI   ++ +S  +  A V+
Sbjct: 99  AAQAGYPKNSSITFEDALKLSSSMTATESDKRRTFIKLKESEIQEALKQMSDYIEDAVVN 158

Query: 156 IVMPDMGSF--RKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDST 213
           + +P+  +F  +    +PTASV +           E I+  VAA+V  L   +V ++D+ 
Sbjct: 159 LSIPEDYTFALKDEATKPTASVKLTLKKSLGSDQIEGIQRFVAASVEGLLPENVVIIDNK 218

Query: 214 GKLLTAN--EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV-DNFRSAVVAELNMDT 270
           G  L+ N  +    +  K L I  A ++EIE  + + L  ++   ++ + +V  ++N D 
Sbjct: 219 GNYLSDNSSDTTEGLSSKQLQIKVATKNEIEKKVKELLGNYVNSPEDVKVSVNLDMNFDM 278

Query: 271 QQIREIVYDP---DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRS-- 325
           Q+I E  Y P   DS +  S + +K+  +S T+   S V      P  +  + P+     
Sbjct: 279 QKISETKYSPVLEDSGIVVSKKTTKEEAQS-TNSSSSGVPGTDTNPTQNTTQYPITSQGG 337

Query: 326 LENTDKKEEQSNYEINTKSIATTHD----NYKLERLSIAVVV 363
                K +E  NY+ N K I T       NY  ++ SIAVV+
Sbjct: 338 QSTYTKSDETVNYQNNEKKIETIKAPGTINY--DKSSIAVVL 377


>gi|226327718|ref|ZP_03803236.1| hypothetical protein PROPEN_01591 [Proteus penneri ATCC 35198]
 gi|225203422|gb|EEG85776.1| hypothetical protein PROPEN_01591 [Proteus penneri ATCC 35198]
          Length = 158

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 67/109 (61%), Gaps = 2/109 (1%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            ++ SP Y  LY  L   D   I   L++ N+ +R+S NGS+I VP + V + R+ LA  
Sbjct: 46  LWLQSPDYKVLYSNLSDKDGGEIVTQLTQMNVPYRLSQNGSAIMVPDNQVHELRLKLAQA 105

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149
           GLP   + +G+EL DK   FG++ F ++I   RALEGE+ARTI+++  +
Sbjct: 106 GLPKGGA-AGFELLDK-EKFGISQFSEQINYQRALEGELARTIETLGPV 152


>gi|269103174|ref|ZP_06155871.1| flagellar M-ring protein FliF [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163072|gb|EEZ41568.1| flagellar M-ring protein FliF [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 581

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 94/415 (22%), Positives = 188/415 (45%), Gaps = 36/415 (8%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           R  IL+LA  I V +++ +    ++  P    L    E S++  +  AL +  I++++  
Sbjct: 50  RQVILVLAVAICVSLIIMVM--MWIKEPEMRPLG-NYETSELITVLDALDQKKIEYQL-- 104

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           +G++I VP+      ++ LA  G  S+    G ++  K   FG++  +++     + E +
Sbjct: 105 DGNTIRVPADQYSAIKLTLARDGW-SAPEAQGDDILLKNMGFGVSQRLEQERLKLSRERQ 163

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVA 196
           +AR I+ I  +  A+V + +P    F +     +A+V +   + +     E  +I  +VA
Sbjct: 164 LARAIEQIKQVRKAQVLLALPKQSVFVRNNQDASATVFLTLSSGATLGQQEVDSIVDMVA 223

Query: 197 AAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKALAAFLG 254
           +AVP L    VTV D  G+LL++   + +     K   + +  +  +   I+  L   LG
Sbjct: 224 SAVPGLKPTRVTVTDQHGRLLSSGTEDPSATAKRKEYELERKQEQTLREKIDAILMPILG 283

Query: 255 VDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------TSQPESA 305
           + N+ S V   ++  + +  +  +DP     RS  + +D   S          ++QP + 
Sbjct: 284 LGNYTSQVDVSMDFSSLEETQKQFDPSKPATRSEFILEDLNNSNRVGGIPGALSNQPPAD 343

Query: 306 VTVEQNMPHVSDRKVPLPRSL-ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
             + Q++  +   K     SL + +  +EE  NYE++T           + R +++V V+
Sbjct: 344 SAIPQDVKDLQSGK-----SLSDGSVHREETRNYELDTTIRHKRSQTGTIARQTVSVAVD 398

Query: 365 KGRLTEVLGRSADQGKI------DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
              +T+        GK+      D+ L +I +++    G +  RGD + + SM F
Sbjct: 399 YKNITD-----PKTGKVTRVPVSDAELEKIRRLLMGGVGFSQARGDLLEVISMPF 448


>gi|84514816|ref|ZP_01002179.1| Flagellar FliF M-ring protein [Loktanella vestfoldensis SKA53]
 gi|84510975|gb|EAQ07429.1| Flagellar FliF M-ring protein [Loktanella vestfoldensis SKA53]
          Length = 616

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 124/505 (24%), Positives = 213/505 (42%), Gaps = 68/505 (13%)

Query: 24  ILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSI 83
           ++A+ +LV + L +     + +P    L+  L  ++   +  AL     D +I      I
Sbjct: 43  VIAAALLVVLGLIL--YLILQAPQRTTLFAALPEAEKAAVMDALRNNGTDVQIDPVTGDI 100

Query: 84  SVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTI 143
           +VP+     +R+ LAAQGLP S  + GY +   +   G +  ++ +   ++ E E+AR+I
Sbjct: 101 TVPTGEFYNSRMSLAAQGLPQSMPD-GYSVLTDM-PMGTSRSVESMRLKQSQEVELARSI 158

Query: 144 QSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLVAAAVP 200
             I  + A+RVH+ +P+  +F +    PTASV ++ + P    S +   AI +LV+++V 
Sbjct: 159 NEIDVVSASRVHLAIPERSAFARNAQNPTASVFVQVM-PGRSLSEQQVMAIVNLVSSSVA 217

Query: 201 NLDMGDVTVLDSTGKLL--TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNF 258
           NL    VTV++  G+LL  T N+   ++  + L     +++     I   L   +G  N 
Sbjct: 218 NLPKTSVTVVNQNGQLLSDTVNDPATDLADRQLEYQLRLENIYRTRIESLLTPIVGPGNV 277

Query: 259 RSAVVAELNMDTQQIREIVYDPDSKVERSIRL------------------SKDAQRSETS 300
            + V  +++    +  E +  PD     S ++                  +    R E  
Sbjct: 278 SAQVSLDIDFTRTERTEDMVIPDQSALLSEQVAVEEEVAEASQGIPGTVGNTPPPRPELE 337

Query: 301 QPESAV-----------------TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTK 343
           QP  A                  TV +    V     P    L ++D      NYE+   
Sbjct: 338 QPAGAADGQAPAEAGATAEAGANTVAEIYAPVDRNTGPGQPRLRSSDST--MRNYEV--- 392

Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI--------DSYLAEINKIVSAA 395
           S   T +N  + R++   V    R T  +  + D   +         S L E+  +VS  
Sbjct: 393 SRTVTSENSPMTRINGVHVAVLLRETLPVAPTEDGDAVAAPAIGLDPSRLDEVKSLVSRT 452

Query: 396 TGINSRRGDTITITSMDFLENQL----FNSGTVQVSFMDILSRHFATVINALVFLVGTLL 451
            GI+  RGDT+ ++S+ F+  +      +  T  V   D   R    + NAL+ +V  L 
Sbjct: 453 VGIDESRGDTLIVSSLPFISPEAVISSLSGSTELVWHEDPWIREM--MRNALMVIV--LA 508

Query: 452 VTFLGLHALRRLHNIDDAKKGEVGG 476
           V  LGL  ++ L     A  GE GG
Sbjct: 509 VVTLGL--IKPLLTQFLASSGESGG 531


>gi|307264866|ref|ZP_07546428.1| secretory protein YscJ/FliF family protein [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306920124|gb|EFN50336.1| secretory protein YscJ/FliF family protein [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 253

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 117/222 (52%), Gaps = 15/222 (6%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +QL  F+       + ++ I+A ++ + I L +   + VN P+Y  LY  L + D   + 
Sbjct: 10  EQLTNFWNKFDKKQKIQLGIIAILLFIGISLLV---YIVNRPNYVVLYSDLSIKDAGAVV 66

Query: 65  VAL-SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV-NSFGL 122
             L +E  I ++IS++G++I VP+    + R+ LA +G+P      G+   D + NS   
Sbjct: 67  EKLKTEFKIPYKISNDGTTILVPAQYKDEVRMKLATEGIPQ----GGFSFQDAMNNSLAT 122

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMIRAI 180
           T   +    +  L+ EI  ++++I G+  A V+IV+PD  +F       + TA+VM+  +
Sbjct: 123 TDQERRQKYLYFLQNEIQNSLKTIDGVQDAIVNIVVPDQNAFVLSNTTNQATAAVML-TL 181

Query: 181 NPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLLTA 219
            P V  S+  ++     V+ +V  L   +VTV+D+ GK+LTA
Sbjct: 182 KPGVTLSSSQVKGIIDFVSKSVEGLKPENVTVIDNNGKILTA 223


>gi|308173583|ref|YP_003920288.1| flagellar basal-body M-ring protein [Bacillus amyloliquefaciens DSM
           7]
 gi|307606447|emb|CBI42818.1| flagellar basal-body M-ring protein [Bacillus amyloliquefaciens DSM
           7]
          Length = 536

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 117/239 (48%), Gaps = 12/239 (5%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110
           LY  L   +  +I   L    +   ++D G+ I VP S V   ++ LAA+GLP + S   
Sbjct: 53  LYKDLSAEEAGQIKEELDTKKVSSELADGGTVIMVPESQVDSLKVQLAAEGLPKTGSID- 111

Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA- 169
           Y  F K   FGLT    ++ +V A + E++  I  + GI +++V I MP    F  +G  
Sbjct: 112 YSFFGKNAGFGLTDNEFDVLKVDATQTELSNLINEMDGIKSSKVMINMPKEAVF--VGED 169

Query: 170 RPTASV-MIRAINP--SVYKSA-EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN 225
           +P AS  ++  I P  S+ +S    + HLV+ +VPNL   ++ ++D        ++    
Sbjct: 170 QPEASASIVLQIKPGYSLDQSQINGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSDSGAG 229

Query: 226 ILGKSLSIVQAIQHEIEMNINKALAAFLGV----DNFRSAVVAELNMDTQQIREIVYDP 280
            +  S +  Q I+ ++E +I K + + LG     D    +V A+++   ++  E + +P
Sbjct: 230 SVSDSYASQQGIKSQVEKDIQKHVQSLLGTMMGQDKVVVSVTADIDFTKEKRTEDIVEP 288


>gi|328553485|gb|AEB23977.1| flagellar MS-ring protein [Bacillus amyloliquefaciens TA208]
          Length = 531

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 117/239 (48%), Gaps = 12/239 (5%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110
           LY  L   +  +I   L    +   ++D G+ I VP S V   ++ LAA+GLP + S   
Sbjct: 48  LYKDLSAEEAGQIKEELDTKKVSSELADGGTVIMVPESQVDSLKVQLAAEGLPKTGSID- 106

Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA- 169
           Y  F K   FGLT    ++ +V A + E++  I  + GI +++V I MP    F  +G  
Sbjct: 107 YSFFGKNAGFGLTDNEFDVLKVDATQTELSNLINEMDGIKSSKVMINMPKEAVF--VGED 164

Query: 170 RPTASV-MIRAINP--SVYKSA-EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN 225
           +P AS  ++  I P  S+ +S    + HLV+ +VPNL   ++ ++D        ++    
Sbjct: 165 QPEASASIVLQIKPGYSLDQSQINGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSDSGAG 224

Query: 226 ILGKSLSIVQAIQHEIEMNINKALAAFLGV----DNFRSAVVAELNMDTQQIREIVYDP 280
            +  S +  Q I+ ++E +I K + + LG     D    +V A+++   ++  E + +P
Sbjct: 225 SVSDSYASQQGIKSQVEKDIQKHVQSLLGTMMGQDKVVVSVTADIDFTKEKRTEDIVEP 283


>gi|74055034|gb|AAZ95839.1| FliF [Aeromonas hydrophila]
          Length = 570

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 100/427 (23%), Positives = 189/427 (44%), Gaps = 28/427 (6%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           F S T + R   LIL   I + I +F+    +   P    L        V+ +   L + 
Sbjct: 31  FLSNTDVLRQITLILGLAICLAIAVFIL--LWGKEPDMRPLGTYSTQELVSTLDY-LDQQ 87

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS--SNSGYELFDKVNSFGLTSFMQE 128
            I + +   G S+ V +      R+ L   GL +++  SN G  +  K +SFG++  M E
Sbjct: 88  KIPYEVE--GKSVLVSAEKYADIRLRLTRAGLATNTDASNDGESILLKDSSFGVSQRM-E 144

Query: 129 ITRVR-ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187
             R++ + E ++A  I+    +  A+V + +P    F +   +P+A+V++     ++ + 
Sbjct: 145 TERLKLSRERQLASAIEQFQNVAKAQVLLAIPKDNVFARNERKPSATVVLNLKGNALGQG 204

Query: 188 -AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMN 244
             ++I  +VA+AV  L+   VTV D  G+LL +   +       K  ++ Q  + E +  
Sbjct: 205 EVDSIVDMVASAVHGLEPTRVTVTDQNGRLLNSGSQDPVSAQTRKEFAMQQKQEVEYKQK 264

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS-IRLSKDAQRSE----- 298
           I+  L   LG DN+ + V   L+   Q+     Y+PD    RS + L +++         
Sbjct: 265 IDAILIPVLGADNYTAEVDLSLDFSQQEQTRKTYNPDLPAVRSEMTLEENSANGSSGGVP 324

Query: 299 ---TSQPESAVTVEQNM--PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
              ++QP +A  + Q    P+         RS     +KE   N+E++T           
Sbjct: 325 GALSNQPPAASNIPQQATGPNADASAAASGRS-----RKEATRNFELDTTVSHIRRQMGG 379

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           + R++++V V+    T   G+   + +    L  + +++S   G +  RGDT+ + ++ F
Sbjct: 380 IRRMTVSVAVDYKSATAADGKVTREARTQPELDTLRRLLSGGLGFDVTRGDTLEVVAIPF 439

Query: 414 LENQLFN 420
              +L N
Sbjct: 440 NRPELEN 446


>gi|319649567|ref|ZP_08003723.1| flagellar M-ring protein [Bacillus sp. 2_A_57_CT2]
 gi|317398729|gb|EFV79411.1| flagellar M-ring protein [Bacillus sp. 2_A_57_CT2]
          Length = 533

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 167/377 (44%), Gaps = 25/377 (6%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           + ++ +++ S T   +T ++I A+ I   I+L  AA F         LY  L  S+   I
Sbjct: 9   IGKVKEYWSSRTKKQKT-VMIGAAAIC--ILLIAAAAFLSTRTTLVPLYSNLTPSETGTI 65

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
             +L    +   I+D G++I VP   V   ++ LAA+G+P S S   Y  F +    G+T
Sbjct: 66  KESLDTRGVVSEIADGGTTIKVPEEAVDSLKVELAAEGIPKSGS-IDYSFFSQNAGIGMT 124

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
                + ++ A++ E+A  ++ I G+  A+V I +P+ G F    +   ++ ++    P 
Sbjct: 125 ENEFNVLKLEAMQTELANLMKGIDGVNDAKVMINLPEKGIFVNDSSEEASASIVLNTKPG 184

Query: 184 VYKSAE----AIRHLVAAAVPNLDMGDVTVLDSTGKLL----TANEMERNILGKSLSIVQ 235
            Y+  E    A+ HL A ++PNL   ++ + +   +        N    +       I +
Sbjct: 185 -YQFEESQIQALYHLAAKSIPNLPTDNIVITNQFFEYFDLKNKQNSSSESTFAAQHEIKK 243

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE--IVYDPDSKVERSIRLSKD 293
            I+ +++  +   L   +G D    +V A+++  TQ+ RE  +V   D +    I +S  
Sbjct: 244 EIERDVQRQVQNMLGTLMGQDKVVVSVTADIDF-TQENREENLVTPVDEENMEGIAIS-- 300

Query: 294 AQR---SETSQPESAVTVE----QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346
           AQ+   + T   E A         + P  +D  V    S  + ++ EE  N E+N     
Sbjct: 301 AQKITETFTGNGEGAGGTPALGGNDEPAGTDSYVATGDSSGDYERIEETINNEVNKIRRE 360

Query: 347 TTHDNYKLERLSIAVVV 363
                YK+  L I V+V
Sbjct: 361 IVESPYKVRDLGIQVMV 377


>gi|23099010|ref|NP_692476.1| flagellar MS-ring protein [Oceanobacillus iheyensis HTE831]
 gi|22777238|dbj|BAC13511.1| flagellar basal-body M-ring protein [Oceanobacillus iheyensis
           HTE831]
          Length = 532

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 156/340 (45%), Gaps = 16/340 (4%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           F   + +Y  LY  L   +  +I+  L    + F + +  S+I+VP   V    + LA+ 
Sbjct: 43  FASTNTNYVPLYNNLSTQEAGQITTELESRGVPFELENGRSTITVPEEQVDTLLLDLASM 102

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP++ S   Y  F +  S+G+T     + ++ A++ E+A  I+S+ GI  A+V I +P+
Sbjct: 103 GLPNNGS-IDYSFFSENTSWGITDNEFNVMKLDAMQTELANLIKSVEGIQDAQVMINVPE 161

Query: 161 MGSF-RKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
              F   +    +AS+++       ++    E + HLVA AVPNL   ++ +++   +  
Sbjct: 162 EPVFATDVTGEASASIVLNTQPGYQFEGNQIEGLHHLVAKAVPNLPEENIVIMNQYFEYF 221

Query: 218 TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV----DNFRSAVVAELNMDTQQI 273
             N  ++     + +  Q ++ E+E +I + L   LG     +N   +V A+++   +  
Sbjct: 222 DQN-TQQTANQDTYTHQQTVKKEVERDIQRRLQQMLGTMVGNENIVVSVTADIDFTQENR 280

Query: 274 REIVYDP-DSKVERSIRLSKDA-QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDK 331
           +E + +P D +    + +S +  Q S   +  +     + +    +  VP   S +N D 
Sbjct: 281 KEELVEPVDIENMEGLPVSLETIQESYVGEGAAEAGTNEEV-GTGEGDVPGYNSGDNGDG 339

Query: 332 K----EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367
           +    +E  NYE N          YKL  L I V VN  R
Sbjct: 340 EYELDKETINYEFNRIRRDIVESPYKLRDLGIQVAVNNTR 379


>gi|328911724|gb|AEB63320.1| flagellar basal-body M-ring protein [Bacillus amyloliquefaciens
           LL3]
          Length = 510

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 117/239 (48%), Gaps = 12/239 (5%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110
           LY  L   +  +I   L    +   ++D G+ I VP S V   ++ LAA+GLP + S   
Sbjct: 27  LYKDLSAEEAGQIKEELDTKKVSSELADGGTVIMVPESQVDSLKVQLAAEGLPKTGSID- 85

Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA- 169
           Y  F K   FGLT    ++ +V A + E++  I  + GI +++V I MP    F  +G  
Sbjct: 86  YSFFGKNAGFGLTDNEFDVLKVDATQTELSNLINEMDGIKSSKVMINMPKEAVF--VGED 143

Query: 170 RPTASV-MIRAINP--SVYKSA-EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN 225
           +P AS  ++  I P  S+ +S    + HLV+ +VPNL   ++ ++D        ++    
Sbjct: 144 QPEASASIVLQIKPGYSLDQSQINGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSDSGAG 203

Query: 226 ILGKSLSIVQAIQHEIEMNINKALAAFLGV----DNFRSAVVAELNMDTQQIREIVYDP 280
            +  S +  Q I+ ++E +I K + + LG     D    +V A+++   ++  E + +P
Sbjct: 204 SVSDSYASQQGIKSQVEKDIQKHVQSLLGTMMGQDKVVVSVTADIDFTKEKRTEDIVEP 262


>gi|289811515|ref|ZP_06542144.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 158

 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 69/117 (58%), Gaps = 2/117 (1%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 44  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 103

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ 
Sbjct: 104 GLPKGGA-VGFELLDQ-EKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLA 158


>gi|254506888|ref|ZP_05119027.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus 16]
 gi|219550173|gb|EED27159.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus 16]
          Length = 582

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 96/423 (22%), Positives = 192/423 (45%), Gaps = 42/423 (9%)

Query: 19  RTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76
           R  +L+L+  I V   +MLF    F+V  P    L    E  ++  +   L +  +D+++
Sbjct: 55  RQVVLVLSISICVALIVMLF----FWVKEPEMRPLGA-YETEELIPVLDYLDQQKLDYKL 109

Query: 77  SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR-AL 135
             +G++I VPSS     ++ +   GL +   N+G ++  +   FG++  + E+ R++ + 
Sbjct: 110 --DGNTILVPSSEYNTLKLDMVRAGL-NQEKNAGDDILLQDMGFGVSQRL-ELERLKLSR 165

Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRH 193
           E ++++ I+ +  +  ARV + +P    F +     +ASV +     +  K  E  ++  
Sbjct: 166 ERQLSKAIEEMKQVRKARVLLALPKQSVFVRHNQEASASVFLTLATGANLKQEEVDSVVD 225

Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN--------I 245
           +V++AVP +    +TV D  G+LL++   +        S  +  +HE+E          I
Sbjct: 226 MVSSAVPGMKPNRITVTDQHGRLLSSGSQD------PASAARRKEHELERKQEQALRDKI 279

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE------- 298
           +  L   LG  N+ + V  +L+    +     +DP++   RS    +D            
Sbjct: 280 DSVLIPILGFGNYTAQVDIQLDFSAVEQTRKSFDPNTPSTRSEYTLEDYNNGSVVAGVPG 339

Query: 299 --TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
             ++QP +  ++ Q++  + D       S+     KE   NYE++T           + R
Sbjct: 340 ALSNQPPADASIPQDVAQMKDGTGLGQGSVH----KEATRNYELDTTISHERRQTGVVNR 395

Query: 357 LSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
            ++AV + N+  +    G +  Q   D+ L+ I +++  A G +  RGD + + SM F E
Sbjct: 396 QTVAVAIKNRAIVNPDTGETTYQPLSDADLSSIRQVLIGAVGYSEARGDLLNVLSMQFAE 455

Query: 416 NQL 418
            ++
Sbjct: 456 PEV 458


>gi|146296280|ref|YP_001180051.1| flagellar M-ring protein FliF [Caldicellulosiruptor saccharolyticus
           DSM 8903]
 gi|145409856|gb|ABP66860.1| flagellar M-ring protein FliF [Caldicellulosiruptor saccharolyticus
           DSM 8903]
          Length = 562

 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 160/340 (47%), Gaps = 18/340 (5%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
           A +    PHY  L+  L+  D  +I   L E  ID ++++ G++I V  + + KA++  A
Sbjct: 41  ALYVTTRPHYVVLFSGLDPKDAAQIQQTLLEQKIDSKVTNGGTTILVKDTDIDKAKMVAA 100

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV-AARVHIV 157
             G P SS  +  +     +S   T   +  T ++  E EI R ++ ++  +  A V++ 
Sbjct: 101 LSGYPKSSEITFEDALKLSSSMTATESDKRRTFIKLKESEIQRALKEMTDYIDDAVVNLS 160

Query: 158 MPDMGSF--RKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
           +P+  +F  +    +PTASV +           E I+  VAA+V  L   +V ++D+ G 
Sbjct: 161 VPEDYTFALKDETTKPTASVKLTLKKSLSSDQIEGIQRFVAASVEGLLPENVVIIDNKGN 220

Query: 216 LLTANEME--RNILGKSLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQ 272
            L+ N  +    I  K L I  A ++EIE  + + L  ++   ++ + +V  ++N D Q+
Sbjct: 221 YLSDNSFDSSEGISSKQLQIKIATKNEIERKVKELLGNYVSSPEDVKVSVNLDMNFDMQK 280

Query: 273 IREIVYDP---DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPL--PRSLE 327
           + E  Y P   D  +  S + +K+  +S  +        + N P  ++ + PL       
Sbjct: 281 VSETKYSPVLEDGGIVVSRKTTKEEAQSTNAGANGIPGTDTN-PTQNNPQYPLSSQGGQS 339

Query: 328 NTDKKEEQSNYEINTKSIATTHD----NYKLERLSIAVVV 363
           +  K +E  NY+ N K I T       NY  ++ SIAVV+
Sbjct: 340 SYSKTDETVNYQNNEKKIETIKAPGTINY--DKSSIAVVL 377


>gi|312884912|ref|ZP_07744602.1| flagellar MS-ring protein [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367389|gb|EFP94951.1| flagellar MS-ring protein [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 583

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 101/430 (23%), Positives = 185/430 (43%), Gaps = 40/430 (9%)

Query: 8   LQFFKSGTSLGRTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           L F      L R  +L+L+  I V   +MLF    F+V  P    L V  +  ++  I  
Sbjct: 45  LDFGAGDLDLLRQVVLVLSISICVALIVMLF----FWVREPEMRPLGV-YDTEELIPILD 99

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L +  +D+ +   G++I VP S     ++ +   GL +    +G ++  +   FG++  
Sbjct: 100 YLDQQKLDYELE--GNTILVPVSDFNSLKLDMVRAGL-NQEREAGDDILMQDMGFGVSQR 156

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
           +++     + E ++++ I+ +  +  ARV + +P    F +     +ASV +     +  
Sbjct: 157 LEQERLKLSRERQLSKAIEELKQVRKARVLLALPKQSVFVRHNQEASASVFLTLKTGANL 216

Query: 186 KSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEM 243
           K  E  ++  +VA+AVP +    VTV D  G+LL++   +        S  +  +HE+E 
Sbjct: 217 KQEEVDSVVDMVASAVPGMKPNRVTVTDQHGRLLSSGSED------PASSARRKEHELER 270

Query: 244 N--------INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
                    I+  L   LG  N+ + V  EL+    +    V+DPD    RS    +D  
Sbjct: 271 KQEQALREKIDSVLIPILGFGNYTAQVDIELDFSAVEQTRKVFDPDKPATRSEYTLEDYN 330

Query: 296 RSE---------TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346
                       ++QP +  ++ Q++  + D       S+     KE   N+EI+T    
Sbjct: 331 NGNMVAGIPGALSNQPPADASIPQDVAQMKDGTALGQGSVH----KEATRNFEIDTTISH 386

Query: 347 TTHDNYKLERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
                  + R ++AV V N+  +    G +  Q   ++ L  I +I+    G +  RGD 
Sbjct: 387 ERRQTGVVNRQTVAVAVKNRSVVNPDTGETTYQPISEAELNSIKQILIGTVGFSESRGDL 446

Query: 406 ITITSMDFLE 415
           + + SM F E
Sbjct: 447 LNVLSMQFAE 456


>gi|114562360|ref|YP_749873.1| flagellar MS-ring protein [Shewanella frigidimarina NCIMB 400]
 gi|114333653|gb|ABI71035.1| flagellar M-ring protein FliF [Shewanella frigidimarina NCIMB 400]
          Length = 558

 Score = 87.0 bits (214), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 105/450 (23%), Positives = 200/450 (44%), Gaps = 31/450 (6%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  L  K+E +++  +   L +  ID++I  N   + VP     + ++ L+  
Sbjct: 51  MWAQEPDYRPLG-KMETAEMILVLDVLDKNQIDYQI--NVDVVKVPEDKYQEVKLLLSRA 107

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           G+ SS+  + Y   ++ + FG++  M++    ++ E  +AR I+ +  I  A+V + +P 
Sbjct: 108 GVQSSTQANDY--LNQDSGFGVSQRMEQARLKQSQEQNLARAIEELKSISRAKVILALPK 165

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
              F +  ++P+A+V++      + +   +AI  +V +AV  L+   VTV DS G+LL +
Sbjct: 166 ENVFARNASKPSATVVVNVRRGGLGQEEIDAIVDIVGSAVQGLEPARVTVTDSNGRLLNS 225

Query: 220 NEME--RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
              +   +   +   +VQ  + E    I   L   LG +NF S V   +N    +     
Sbjct: 226 GSQDGASSRARREQELVQQQEAEYRKKIESILMPILGPENFTSQVDVNMNFTAVEQTAKR 285

Query: 278 YDPDSKVERS---IRLSKDAQRSE------TSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
           + PD    RS   I  +   Q S       ++QP     +E ++P V+        ++  
Sbjct: 286 FSPDLPAIRSEMIIERNSSGQNSGGIPGALSNQP----PMESDIPQVAGEAT--ASTMSG 339

Query: 329 TDKKEEQSNYEINTKSIATTHDN---YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385
              KE   NYE++T +I+ T       +   +S+A+    G++ E  G  A   + +  L
Sbjct: 340 DSSKEATRNYELDT-TISHTRQQIGVVRRVSVSVAINFKPGQVDEN-GVVARVPRTEQEL 397

Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445
             I +++  A G +++RGD + + ++ F++  +       +       R     + A+V 
Sbjct: 398 TNIRRLLEGAVGFSTQRGDALEVVTVPFMDQLIEALPEPDMWEEPWFWRAIKLALGAIVI 457

Query: 446 LVGTLLVTFLGLHALRRLHNI---DDAKKG 472
           LV  L V    L  L   + I   DD + G
Sbjct: 458 LVLILAVVRPMLKKLTNPNGINMPDDIRPG 487


>gi|163750550|ref|ZP_02157788.1| flagellar M-ring protein [Shewanella benthica KT99]
 gi|161329705|gb|EDQ00694.1| flagellar M-ring protein [Shewanella benthica KT99]
          Length = 567

 Score = 87.0 bits (214), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 100/441 (22%), Positives = 198/441 (44%), Gaps = 34/441 (7%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  L  K++  ++ ++   L +  ID+RI  +   I VP       ++ L+ +
Sbjct: 56  LWAQEPEYRPLG-KMDTQEMVKVLDVLDKNKIDYRIDID--VIKVPEDQYQAVKLMLSRE 112

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR-ALEGEIARTIQSISGIVAARVHIVMP 159
           G+  +S ++ Y    + + FG++  M E+ R++ + E  +AR I+ +  I  A+V + +P
Sbjct: 113 GIDGASRSNDY--LSQDSGFGVSQRM-ELARLKHSQELNLARAIEELRSINRAKVILAIP 169

Query: 160 DMGSFRKIGARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
               F +  A+P+A+V++      +  +  +A+  +VA+AV  L    VTV DS G+LL 
Sbjct: 170 KENVFARNRAKPSATVVLNVRRGGLGQEEVDAVVDIVASAVQGLIPTRVTVTDSNGRLLN 229

Query: 219 ANEME--RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           +   +       +   + Q  + E    +   L   LG +NF S V  ++ MD   + + 
Sbjct: 230 SGSQDAVSARARRESDLAQQKEAEYRTKVQSILMPILGPENFTSQV--DVTMDFTAVEQT 287

Query: 277 V--YDPDSKVERSIRLSKDAQRSETS---------QPESAVTVEQNMPHVSDRKVPLPRS 325
              Y+PD    RS  + ++     ++         QP     + QN    +D ++   R 
Sbjct: 288 SKRYNPDLPALRSEMIVENNSNGGSASGIPGALSNQPPMESDIPQNA-LTTDAQLNSAR- 345

Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI---D 382
              +  +E   N+E+NT    T      + R+S++V VN    T  LG      ++   +
Sbjct: 346 -RGSSHREATRNFELNTTISHTRQQVGTVRRISVSVAVNYK--TGTLGEDGQINRVPRTE 402

Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINA 442
             LA I +++  A G +++RGD + + ++ F++  +      ++       R     +  
Sbjct: 403 QELANIRRLLEGAVGFSTQRGDVLEVVTVPFMDQLIEELPAPELWEQPWFWRALKLGMGG 462

Query: 443 LVFLVGTLLVTFLGLHALRRL 463
           ++ L    L+ F+    L+RL
Sbjct: 463 VIILA---LILFIVRPMLKRL 480


>gi|154686037|ref|YP_001421198.1| flagellar MS-ring protein [Bacillus amyloliquefaciens FZB42]
 gi|154351888|gb|ABS73967.1| FliF [Bacillus amyloliquefaciens FZB42]
          Length = 536

 Score = 87.0 bits (214), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 107/230 (46%), Gaps = 8/230 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110
           LY  L   +  +I   L    +   ++D G+ I VP S V   ++ LAA+GLP + S   
Sbjct: 53  LYKDLSAEEAGKIKEELDTKKVSSELADGGTVIKVPESQVDSLKVQLAAEGLPKTGS-ID 111

Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA- 169
           Y  F +   FGLT    ++ +V A + E++  I  + GI +++V I MP    F  +G  
Sbjct: 112 YSFFGQNAGFGLTDNEFDVLKVEATQTELSNLINEMDGIKSSKVMINMPKEAVF--VGED 169

Query: 170 RPTASV-MIRAINPSV---YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN 225
           +P AS  ++  + P           + HLV+ +VPNL   ++ ++D        ++    
Sbjct: 170 QPAASASIVLQMKPGYSLDQNQINGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSDSGAG 229

Query: 226 ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
            +  S +  Q I+ ++E +I K + + LG    +  VV  +  D    +E
Sbjct: 230 SVSDSYASQQGIKSQVEKDIQKHVQSLLGTMMGQDKVVVSVTADVDFTKE 279


>gi|4378873|gb|AAD19741.1| flagellar M-Ring protein [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 555

 Score = 86.7 bits (213), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 121/241 (50%), Gaps = 10/241 (4%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           F +++P   +LY      D   I+ AL    I + I      I+V      KAR  LA Q
Sbjct: 71  FLLSAPTQRDLYPGARDGDRASIARALETGGIHYNIKRGNGVITVSEKEFYKARDLLAQQ 130

Query: 101 GLPSSSSNSGYELFDKVNSFGL-TSFMQEITRVRAL-EGEIARTIQSISGIVAARVHIVM 158
           GLP S+ +        ++S  L  S   E  R+RA  E  +ARTI++I  +  ARVHI  
Sbjct: 131 GLPKSAPDG----VHVISSLPLGASRAVEAKRLRAAREVVLARTIETIDVVNQARVHIAE 186

Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           P    F +     TASVM++ +      +A  +AI++LVAA+VP +    V+V+D  G L
Sbjct: 187 PQPSPFVREQVHGTASVMLKLMTGRNLSNAQVQAIQNLVAASVPGMAPEAVSVVDQAGHL 246

Query: 217 LTA-NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM-DTQQIR 274
           L+A +  + +I  + L + Q ++      +NK L   LG +N+ + V  +L+  ++Q  R
Sbjct: 247 LSATSNADNDINDRQLRLQQTVEARYMDALNKLLVPLLGENNYTAEVHTDLDFTESQATR 306

Query: 275 E 275
           E
Sbjct: 307 E 307



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/113 (23%), Positives = 59/113 (52%), Gaps = 12/113 (10%)

Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS--YLAEINKIVSAA 395
           YE+  +     +    ++R+S+A+ +          R  + GK  S   +A++ K++  A
Sbjct: 418 YELGREVSVIRNPTGSVKRVSVAIAL----------RQINHGKPPSPEQVAQLEKLIKGA 467

Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            G ++ RGD + I+S DF+   +F+    Q S++ +L+R+ + ++ A + + G
Sbjct: 468 IGFDASRGDVVAISSSDFMGGSVFSMPWYQNSWVPLLARNLSALLVAALVIFG 520


>gi|323496555|ref|ZP_08101609.1| flagellar MS-ring protein [Vibrio sinaloensis DSM 21326]
 gi|323318399|gb|EGA71356.1| flagellar MS-ring protein [Vibrio sinaloensis DSM 21326]
          Length = 582

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 94/423 (22%), Positives = 193/423 (45%), Gaps = 42/423 (9%)

Query: 19  RTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76
           R  +L+L+  I V   +MLF    F+V  P    L    E  ++  +   L +  +++++
Sbjct: 55  RQVVLVLSISICVALIVMLF----FWVKEPEMRPLGA-YETEELIPVLDYLDQQKMEYKL 109

Query: 77  SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR-AL 135
             +G++I VP+S     R+ +   GL +   N+G ++  +   FG++  + E+ R++ + 
Sbjct: 110 --DGNTILVPTSEYNSLRLDMVRAGL-NQEKNAGDDILLQDMGFGVSQRL-ELERLKLSR 165

Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRH 193
           E ++++ I+ +  +  ARV + +P    F +     +ASV +     +  K  E  ++  
Sbjct: 166 ERQLSKAIEEMKQVRKARVLLALPKQSVFVRHNQEASASVFLTLKTGANLKQEEVDSVVD 225

Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN--------I 245
           +V++AVP +    +TV D  G+LL++   +        S  +  +HE+E          I
Sbjct: 226 MVSSAVPGMKPNRITVTDQHGRLLSSGSQD------PASAARRKEHELERKQEQALRDKI 279

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE------- 298
           +  L   LG  N+ + V  EL+    +     +DP++   RS    +D            
Sbjct: 280 DSVLIPILGFGNYTAQVDIELDFSAVEQTRKSFDPNTPSTRSEYTLEDYNNGSVVAGVPG 339

Query: 299 --TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
             ++QP +  ++ Q++  + D       + + +  KE   N+E++T           + R
Sbjct: 340 ALSNQPPADASIPQDVAQMKDGS----GTGQGSVHKEATRNFELDTTISHERRQTGVVNR 395

Query: 357 LSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
            ++AV + N+  +    G +  Q   ++ LA I +++  A G +  RGD + + SM F E
Sbjct: 396 QTVAVAIKNRAIVNPDTGETTYQPLSEADLASIRQVLIGAVGFSEARGDLLNVLSMQFAE 455

Query: 416 NQL 418
            ++
Sbjct: 456 PEV 458


>gi|295696113|ref|YP_003589351.1| flagellar M-ring protein FliF [Bacillus tusciae DSM 2912]
 gi|295411715|gb|ADG06207.1| flagellar M-ring protein FliF [Bacillus tusciae DSM 2912]
          Length = 506

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/265 (30%), Positives = 120/265 (45%), Gaps = 26/265 (9%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           R R LI  +     ++L +A  ++  +P Y  +Y  L+      ++  L E  I +R S 
Sbjct: 23  RRRWLIAGAA--AGLVLLVALSWYALAPRYVVIYQNLDAKAAGEVTNKLDELKIPYRTS- 79

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYE-LFDKVNSFGLTSFMQEITRVRALEG 137
            G  + VP     +AR+ LA  GLP S    GYE LF   N  G++     +  + ALEG
Sbjct: 80  -GGQVMVPEQDADRARMQLAIAGLPKSGY-VGYEDLFGNTNIGGMSDNEFNVKSLMALEG 137

Query: 138 EIARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMIRAINPSVYKSAE---AIR 192
            +A TI+ I G+   +VH+VMP+   F  + +G +  ASV ++ I P      +    I+
Sbjct: 138 SLAGTIRQIDGVEDVQVHLVMPEQHMFVEQPVG-QAKASVFLK-IAPGAQLGPDQVAGIQ 195

Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLTANE--------MERNILGKSLSIVQAIQHEIEMN 244
            LV+ +V  L+  DV V+D  G  L   E         +R IL     I +  +  I   
Sbjct: 196 QLVSHSVKGLNATDVAVVDQNGVRLDHPEDAGTAVSNADRQIL-----IQKQYEQLISDR 250

Query: 245 INKALAAFLGVDNFRSAVVAELNMD 269
           +  AL   LG  N      A LN D
Sbjct: 251 LQSALGRILGPGNVVVLANARLNFD 275


>gi|225569979|ref|ZP_03779004.1| hypothetical protein CLOHYLEM_06074 [Clostridium hylemonae DSM
           15053]
 gi|225161449|gb|EEG74068.1| hypothetical protein CLOHYLEM_06074 [Clostridium hylemonae DSM
           15053]
          Length = 536

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 113/433 (26%), Positives = 191/433 (44%), Gaps = 44/433 (10%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L QL  F   G    +T+I I  +  +  I   +     +N   Y  L+  +   +  +I
Sbjct: 8   LGQLKDFL--GKYSKKTKI-IAGTAAVAVIAAAVIIALVLNHKDYTTLFTGVTEEEATKI 64

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L E+ +DF+  +NG  I V   +  K R  L  +G P S     Y++F + NS G+T
Sbjct: 65  IGKLQESGVDFQYKENG-DILVDEKVADKTRADLVYEGYPKSGFT--YDVFTE-NSGGMT 120

Query: 124 SFMQ-EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF------RKIGARPTASVM 176
           +  + E  ++  L+  I  TI+   G+  A+V+I + +   +       K G  P+ASV+
Sbjct: 121 TDSEKETYKLYDLQDRIGATIRFFDGVKDAKVNIALKEEQKYVLEEDGEKAGT-PSASVV 179

Query: 177 I---RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS- 232
           +      +PS  K A AI+ LVA +VP ++M +V V D  G  ++ N+   +  G + + 
Sbjct: 180 VTMESGESPS-EKQAAAIQRLVAKSVPEMEMENVAVFDGNGIEVSVNKDGSSASGSNATE 238

Query: 233 -IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE-IVYDPDSKVERSIRL 290
            I Q I+ +I   +   L +F G +N R +   ++NM+ + IRE   Y    K++   + 
Sbjct: 239 EIAQLIEMQISKKVINVLGSFYGAENIRVSARGKVNME-KVIRESTTYTTPEKIDEKDKT 297

Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQS-------NYEINTK 343
              +  S T++              S+     P     TD     S       +Y +N  
Sbjct: 298 GIVSSES-TTKDTVNGGGAGTGVAGSETNADTPEYNAGTDNNASGSASESATRDYLVNQV 356

Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI-NSRR 402
                 D   LE L+++V +N        G++A  G I   + E+  +V  ATGI  + R
Sbjct: 357 KEQGELDTGVLEDLTVSVAIN--------GKNA--GNIS--MNELRDLVGNATGIAAADR 404

Query: 403 GDTITITSMDFLE 415
            + ITI +  F E
Sbjct: 405 LEKITIVNAPFYE 417


>gi|217076889|ref|YP_002334605.1| flagellar M-ring protein FliF [Thermosipho africanus TCF52B]
 gi|217036742|gb|ACJ75264.1| flagellar M-ring protein FliF [Thermosipho africanus TCF52B]
          Length = 534

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 107/403 (26%), Positives = 195/403 (48%), Gaps = 31/403 (7%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
            LD   +F      L + + + + S +LV I++ +     +N+P Y  L      +D   
Sbjct: 7   FLDSFSKFPDFWKGLKKNQKITMLS-LLVAILIAVVLTVILNAPKYVLLISANNETDAGA 65

Query: 63  ISVALSEANIDFRISDNGSSISVPSSM-VGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           I   L    I +++ + G+ I +PSS  V + R+ LA+ G    SS+ G+EL D+ +SFG
Sbjct: 66  IIQQLEAQGIPYKV-EAGNRIFIPSSYNVYEVRMKLASSGA-LGSSSKGFELLDQ-SSFG 122

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAI 180
            TSF +++   RAL+GE+ RTI +I+G+  ARVH+ +P    + R   A   ASV +  +
Sbjct: 123 ATSFDKQVNYQRALQGELERTIATINGVKFARVHLTLPKYTYYVRGEMAETRASVQL-VL 181

Query: 181 NPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQA 236
           +P V  S E I+   +L+  AV  L   +V V+D+ G+ L+     + N +  S  +   
Sbjct: 182 DPGVSLSKEQIKGIIYLLTGAVEGLKPENVKVVDNYGRALSDLVNFDDNTVAASTKVELK 241

Query: 237 IQHE--IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
           +Q E   +  I  AL    G       V+ ++ ++ Q+  + +    +     IR  +  
Sbjct: 242 MQLESYYKKKIQPALETVFGFGTVE--VIPDVKLNWQKAEKTITTYSTPKGGLIRSQETE 299

Query: 295 QRSETSQPESA--VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEIN--TKSIATTHD 350
               T+ P     V  E N+P    + +    S+   +K  + +NYE+N   ++I   ++
Sbjct: 300 SEKSTTAPADGGPVGTESNIPTTYYQSIE-GSSVTLYEKNHQITNYELNQIVENIVQNNE 358

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVS 393
             ++E +S++V+++    + V  + + +        EINK+VS
Sbjct: 359 G-EIENISLSVIIDSS--STVFNKISKE--------EINKMVS 390


>gi|325273535|ref|ZP_08139767.1| flagellar MS-ring protein [Pseudomonas sp. TJI-51]
 gi|324101328|gb|EGB98942.1| flagellar MS-ring protein [Pseudomonas sp. TJI-51]
          Length = 424

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 108/454 (23%), Positives = 189/454 (41%), Gaps = 91/454 (20%)

Query: 152 ARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGD 206
           ARVH+ +P    F +   +P+ASV++     RA+ P       AI +LVA +VP LD   
Sbjct: 1   ARVHLAIPKSSVFVRDERKPSASVLVELYPGRALEPG---QVMAIVNLVATSVPELDKSQ 57

Query: 207 VTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVA 264
           VTV+D  G LL+    +  +   GK     + ++  +   ++  L   LG D +++ V A
Sbjct: 58  VTVVDQKGNLLSEQIQDSALTQAGKQFDYSRRVESMLTQRVHNILQPVLGNDRYKAEVSA 117

Query: 265 ELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET-----------SQPESAVTVEQ--- 310
           +L+    +     ++PD    RS + S D QR+ +           +QP  A T  Q   
Sbjct: 118 DLDFSAVESTSEQFNPDQPALRSEQ-SVDEQRASSQGPQGVPGALSNQPPGAATAPQTTG 176

Query: 311 ------------------NMPHVSDRKVPLPRSLENTDKKEEQS--NYEINTKSIATTHD 350
                             N   + D     P        K +QS  N+E++     T   
Sbjct: 177 GAATPAAAIQPGQPLVDANGQQIMDPATGQPMLAPYPSDKRQQSTKNFELDRSISHTRQQ 236

Query: 351 NYKLERLSIAVVVN-KGRLTEVLGRS--ADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
             ++ RLS+AVVV+ + ++    G +  A  G  D  LA   ++V  A G ++ RGD++T
Sbjct: 237 QGRMTRLSVAVVVDDQVKIDPATGDATRAPWGSED--LARFTRLVQDAVGFDASRGDSVT 294

Query: 408 ITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
           + ++ F  ++      +    Q  F DI+ +    V+  LV + G L            L
Sbjct: 295 VINVPFAADRGEEIADIAFYQQPWFWDIV-KQVLGVVFILVLVFGVLRPV---------L 344

Query: 464 HNIDDAKKG-------EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF-SHSRNL 515
           +NI    K        E+GG   L           G + ND ++L      +  S S   
Sbjct: 345 NNITGGGKQAAPDSDMELGGMMGLD----------GELANDRVSLGGPTSILLPSPSEGY 394

Query: 516 QSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549
           ++++N+         +  ++  +  R A+++++W
Sbjct: 395 EAQLNA---------IKGLVAEDPGRVAQVVKEW 419


>gi|311068142|ref|YP_003973065.1| flagellar MS-ring protein [Bacillus atrophaeus 1942]
 gi|310868659|gb|ADP32134.1| flagellar MS-ring protein [Bacillus atrophaeus 1942]
          Length = 530

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 144/329 (43%), Gaps = 22/329 (6%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110
           LY  L   +  +I   L    +   +SD G+ I VP   V   ++ LAA+GLP + S   
Sbjct: 48  LYKDLSAEEAGQIKEELDAKKVPSELSDGGTVIKVPEEQVDTLKVQLAAEGLPKTGS-ID 106

Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170
           Y  F +   FGLT    ++ +V A + E++  I  + GI  ++V I +P    F      
Sbjct: 107 YSFFGQNAGFGLTDNEFDMLKVEATQTELSNLINEMKGIKNSKVMINLPKDAVFVGEEQS 166

Query: 171 PTASVMIRAINPSV---YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL 227
             ++ ++  +NP           + HLV+ +VPNL   ++ ++D        +  +    
Sbjct: 167 TASASIVLQMNPGYTLDQSQVNGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSNGDAGSY 226

Query: 228 GKSLSIVQAIQHEIEMNINK----ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-DS 282
             S S  Q I+ ++E +I K     L   +G D    +V  +++   +   E + +P D 
Sbjct: 227 ADSYSSQQGIKTQVEKDIQKHVQTLLGTMMGQDKVVVSVTTDIDFTKENRTEDLVEPVDK 286

Query: 283 KVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVP-LPRSLENT-----DKKEEQS 336
           +    I +S + + +ET Q ++A           D       ++ EN+     DK   + 
Sbjct: 287 ENMEGIAVSAE-KVAETYQGDNAAN--GGTAGTGDEDTTGYAQTDENSENGNYDKSSNKI 343

Query: 337 NYEINT--KSIATTHDNYKLERLSIAVVV 363
           NYE+N   K IA +   YK+  L I V+V
Sbjct: 344 NYEVNRIHKEIAESP--YKVRDLGIQVMV 370


>gi|160902819|ref|YP_001568400.1| flagellar M-ring protein FliF [Petrotoga mobilis SJ95]
 gi|160360463|gb|ABX32077.1| flagellar M-ring protein FliF [Petrotoga mobilis SJ95]
          Length = 516

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 139/266 (52%), Gaps = 19/266 (7%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           + R  I+  + +V +++F +    ++  +Y+     L+ ++   I   L E  I++++ D
Sbjct: 19  KKRNYIVLLITVVALIVFFS--ILLSRKNYEFFIGGLDQANAGNIVTKLEEMGIEYKVDD 76

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSN-SGYELFDKVNSFGLTSFMQEITRVRALEG 137
            G+ I V +  V + R+ LA++G  S   N  GYEL      FG TS+ +++    ALEG
Sbjct: 77  FGN-IYVANQNVSELRMKLASEG--SLGYNLQGYELLQN-QGFGATSYDKQVNYQIALEG 132

Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIG--ARPTASVMIRAINPSVYKSAEAIR--- 192
           E++R+I S+  + +ARVH+V+P   ++ ++G   +P+ASV++  +NP    ++  I+   
Sbjct: 133 ELSRSIASMDSVQSARVHLVIPPR-TYYQVGESPKPSASVLL-VLNPGASVTSSQIKGII 190

Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS---LSIVQAIQHEIEMNINKAL 249
           +LVA AV  L   ++ V+D+    L+A       +G +     +   I+   +  +   L
Sbjct: 191 NLVAGAVAGLQPENIKVVDNFSNDLSAQIALGEDIGSADTKFKLKAEIERYYKEKVESGL 250

Query: 250 AAFLGVDNFRSAVVAELNMDTQQIRE 275
            +  G+ N    VV E+ ++ Q+I E
Sbjct: 251 QSVFGLGNV--VVVPEIELNWQKIEE 274


>gi|289678989|ref|ZP_06499879.1| flagellar MS-ring protein [Pseudomonas syringae pv. syringae FF5]
          Length = 178

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 69/127 (54%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92
           + +  A   +   P Y  LY  L   D  +I   L+ ANI++ +  N  ++ V S  V +
Sbjct: 49  VAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTLTAANINYTVEPNSGALLVKSDDVQR 108

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
           ARI LA  G+  + +N G+E+ DK    G + FM+     R LEGE+ARTI +++ +  A
Sbjct: 109 ARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFMEATRYRRGLEGELARTISALNNVKGA 168

Query: 153 RVHIVMP 159
           RVH+ +P
Sbjct: 169 RVHLAIP 175


>gi|113969625|ref|YP_733418.1| flagellar MS-ring protein [Shewanella sp. MR-4]
 gi|114046855|ref|YP_737405.1| flagellar MS-ring protein [Shewanella sp. MR-7]
 gi|113884309|gb|ABI38361.1| flagellar M-ring protein FliF [Shewanella sp. MR-4]
 gi|113888297|gb|ABI42348.1| flagellar M-ring protein FliF [Shewanella sp. MR-7]
          Length = 561

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 98/425 (23%), Positives = 196/425 (46%), Gaps = 23/425 (5%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  L  K+E  ++ ++   L +  I ++I  +   + VP     + ++ L+  
Sbjct: 53  IWAQEPEYRPLG-KMETQEMVQVLDVLDKNKIKYQI--DVDVVKVPEDKYQEVKMMLSRA 109

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           G+ S++++S  +   + + FG++  M++     + E  +AR I+ +  +  A+V + +P 
Sbjct: 110 GIDSAAASS-KDFLTQDSGFGVSQRMEQARLKHSQEENLARAIEQLQSVSRAKVILALPK 168

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
              F +  A+P+A+V+I      + +   +AI  +VA+AV  L+   VTV DS G+LL +
Sbjct: 169 ENVFARNTAQPSATVVINTRRGGLGQGEVDAIVDIVASAVQGLEPSRVTVTDSNGRLLNS 228

Query: 220 NEME--RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
              +       + L +VQ  + E    I+  L+  LG DNF S V  +++MD   + +  
Sbjct: 229 GSQDGVSARARRELELVQQKEAEYRTKIDSILSPILGPDNFTSQV--DVSMDFTAVEQTA 286

Query: 278 --YDPDSKVERS-IRLSKDAQRSETSQPESAVT----VEQNMPHVSDRKVPLPRSLENTD 330
             ++PD    RS + +  ++    T     A++    +E N+P  +D+            
Sbjct: 287 KRFNPDLPSLRSEMTVENNSTGGSTGGIPGALSNQPPMESNIPQEADKAT--ESVTAGNS 344

Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVV---VNKGRLTEVLGRSADQGKIDSYLAE 387
            +E   N+E++T +I+ T     + R     V      G   E  G+ A   + +  L  
Sbjct: 345 HREATRNFELDT-TISHTRQQIGVVRRVSVSVAVDFKPGAAGEN-GQVARVARTEQELTN 402

Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447
           I +++  A G +++RGD + + ++ F++  + +    ++       R     + ALV LV
Sbjct: 403 IRRLLEGAVGFSAQRGDVLEVVTVPFMDQLVEDVPAPELWEQPWFWRAVKLGVGALVILV 462

Query: 448 GTLLV 452
             L V
Sbjct: 463 LILAV 467


>gi|145298346|ref|YP_001141187.1| flagellar MS-ring protein [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142851118|gb|ABO89439.1| flagellar M-ring protein FliF [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 569

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 98/425 (23%), Positives = 188/425 (44%), Gaps = 25/425 (5%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           F S T + R   LIL   I + I +F+    +   P    L       ++ +    L   
Sbjct: 31  FLSNTDVLRQITLILGLAICLAIAVFIL--LWGKEPDMRPLGT-YSTQELVKTLDYLDAQ 87

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS--SNSGYELFDKVNSFGLTSFMQE 128
            I + +  +G S+ V +      R+ L   GL +++  SN G  +  K +SFG++  M E
Sbjct: 88  KIPYEV--DGKSVLVSAEKYADIRLRLTRAGLATNTDASNDGESILLKDSSFGVSQRM-E 144

Query: 129 ITRVR-ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187
             R++ + E ++A  I+    +  A+V + +P    F +   +P+A+V++     ++ + 
Sbjct: 145 TERLKLSRERQLASAIEQFQNVAKAQVLLAIPKDNVFARNERKPSATVVLSLKGNALGQG 204

Query: 188 -AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMN 244
             ++I  +VA+AV  L+   VTV D  G+LL +   +       K  ++ Q  + E +  
Sbjct: 205 EVDSIVDMVASAVHGLEPTRVTVTDQNGRLLNSGSQDPVSAQTRKEFAMQQKQEVEYKQK 264

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS-IRLSKDAQRSE----- 298
           I+  L   LG DN+ + V   L+   Q+     Y+PD    RS + L +++         
Sbjct: 265 IDAILIPVLGADNYTAEVDLSLDFSQQEQTRKTYNPDLPAVRSEMTLEENSASGSNGGVP 324

Query: 299 ---TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
              T+QP +A     N+P  +        S     +KE   N+E++T           + 
Sbjct: 325 GALTNQPPAA----SNIPEEAAGGDGGAASSSGRSRKEATRNFELDTTVSHIRRQMGGIR 380

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           R++++V V+   +    G    + +  + L  + +++S   G +  RGDT+ + ++ F  
Sbjct: 381 RMTVSVAVDYKSIAGADGAVTREARSQAELDTLRRLLSGGLGFDVTRGDTLEVVAIPFNR 440

Query: 416 NQLFN 420
            +L N
Sbjct: 441 PELEN 445


>gi|289805827|ref|ZP_06536456.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 410

 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 95/339 (28%), Positives = 152/339 (44%), Gaps = 53/339 (15%)

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMG 205
           +ARVH+ MP    F +    P+ASV +     RA++        A+ HLV++AV  L  G
Sbjct: 2   SARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALD---EGQISAVVHLVSSAVAGLPPG 58

Query: 206 DVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVA 264
           +VT++D +G LLT +N   R++    L     ++  I+  I   L+  +G  N  + V A
Sbjct: 59  NVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTA 118

Query: 265 ELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE--------------TSQP----ESAV 306
           +L+   ++  E  Y P+    ++   S+    SE              ++QP    E+ +
Sbjct: 119 QLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPI 178

Query: 307 TVE-------QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
                     QN P  S           NT ++ E SNYE++     T  +   +ERLS+
Sbjct: 179 ATPPTNQQNAQNTPQTSTSTNSNNAGPRNT-QRNETSNYEVDRTIRHTKMNVGDIERLSV 237

Query: 360 AVVVNKGRLTE--VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           AVVVN   L +   L  +ADQ K      +I  +   A G + +RGDT+ + +  F  + 
Sbjct: 238 AVVVNYKTLADGKPLPLTADQMK------QIEDLTREAMGFSDKRGDTLNVVNSPF--SA 289

Query: 418 LFNSG-----TVQVSFMDILSRHFATVINALVFLVGTLL 451
           + N+G       Q SF+D L    A     LV +V  +L
Sbjct: 290 VDNTGGELPFWQQQSFIDQL---LAAGRWLLVLVVAWIL 325


>gi|260767706|ref|ZP_05876641.1| flagellar M-ring protein FliF [Vibrio furnissii CIP 102972]
 gi|260617215|gb|EEX42399.1| flagellar M-ring protein FliF [Vibrio furnissii CIP 102972]
 gi|315179462|gb|ADT86376.1| flagellar M-ring protein FliF [Vibrio furnissii NCTC 11218]
          Length = 580

 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 102/434 (23%), Positives = 195/434 (44%), Gaps = 42/434 (9%)

Query: 8   LQFFKSGTSLGRTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           L F      L R  +L+L+  I V   +MLF    F+V  P    L    E  ++  +  
Sbjct: 43  LDFAMGDLDLLRQIVLVLSISICVALIVMLF----FWVKEPEMRPLGA-YETEELIPVLD 97

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L +    +++  +G++I VP+S     ++++   GL + S  +G ++  +   FG++  
Sbjct: 98  YLDQQKQTYKL--DGNTILVPNSDYNSIKLNMVRAGL-NQSRQAGDDILLQDMGFGVSQR 154

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
           +++     + E ++ + I+ +  +  ARV + +P    F +     +ASV +     S  
Sbjct: 155 LEQERLKLSRERQLGKAIEEMRQVNKARVLLALPKQSVFVRHNQEASASVFLTLRTGSNL 214

Query: 186 KSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEM 243
           K  E  +I  +VA+AVP +    VTV D  G+LL++    ++ +  +    Q ++ + E 
Sbjct: 215 KQEEVDSIVDMVASAVPGMTPTRVTVTDQHGRLLSSGS--QDPVSAARRKEQELERKQEQ 272

Query: 244 N----INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE- 298
           N    I+  L   LG+ N+ + V  EL+    +     +DP++   RS    +D      
Sbjct: 273 NLRDKIDSVLIPILGLGNYTAQVDIELDFSAIEQTRKRFDPNTPATRSEYTLEDYNNGNV 332

Query: 299 --------TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
                   ++QP +  ++ Q++  + D  V    S+     KE   N+E++T        
Sbjct: 333 VAGVPGALSNQPPADASIPQDVAQMKDGSVMGQGSVH----KEATRNFELDTTISHERKQ 388

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKI------DSYLAEINKIVSAATGINSRRGD 404
              + R ++AV V K R +     +AD G++      +S L  I +++    G N  RGD
Sbjct: 389 TGVINRQTVAVAV-KNRSS----VNADTGEVTYTPLSESELNSIRQVLIGTVGYNENRGD 443

Query: 405 TITITSMDFLENQL 418
            + + SM F E ++
Sbjct: 444 LLNVLSMQFAEPEM 457


>gi|257140593|ref|ZP_05588855.1| flagellar MS-ring protein [Burkholderia thailandensis E264]
          Length = 377

 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 109/241 (45%), Gaps = 23/241 (9%)

Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKAL 249
           AI  LV+++VP++   +VT++D  G LLT       +    L  VQ I+   +  I+  L
Sbjct: 9   AITRLVSSSVPDMPAKNVTIVDQDGNLLTQTASATGLDASQLKYVQQIERNTQKRIDAIL 68

Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS-IRLSKDAQRSE---------- 298
           A   G  N RS V A+++    +     Y P+   ++S IR  + +  +E          
Sbjct: 69  APIFGAGNARSQVSADVDFSKIEQTSESYAPNGTPQQSAIRSQQTSTSTELAQSGTSGVP 128

Query: 299 ------TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
                   QP SA  V  N    +    P+      +D+K+  +NYE++           
Sbjct: 129 GALSNTPPQPASAPIVASNGQPAAPAATPV------SDRKDSTTNYELDKTVRHVEQSMG 182

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
            ++RLS+AVVVN    T+  GR   Q      LA++ ++V  A G + +RGD++ + +  
Sbjct: 183 TIKRLSVAVVVNYQPSTDAKGRVTMQPLTADKLAQVQQLVKDAMGYDEKRGDSVNVVNSA 242

Query: 413 F 413
           F
Sbjct: 243 F 243


>gi|89098644|ref|ZP_01171526.1| flagellar M-ring protein [Bacillus sp. NRRL B-14911]
 gi|89086606|gb|EAR65725.1| flagellar M-ring protein [Bacillus sp. NRRL B-14911]
          Length = 528

 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 113/241 (46%), Gaps = 28/241 (11%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110
           LY  L  S+   I  +L    I   I+D GS+I VP  +V   ++ LAA+G+P S S   
Sbjct: 53  LYSNLSPSETGAIKESLDGRGIASEIADGGSTIMVPEEVVDTLKVELAAEGIPKSGSID- 111

Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170
           Y  F +    G+T     + ++ A++ E++  I+ I G+  A+V I +P+ G F      
Sbjct: 112 YSFFSQNAGIGMTENEFNVLKLDAMQTELSNLIKGIEGVNDAKVMINLPEKGIFINDQTE 171

Query: 171 PTASVMIRAINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVL-------------DSTG 214
             ++ ++    P      E I+   HL++ +VPNL   ++ V              D++G
Sbjct: 172 EASASIVLNTKPGYQFETEQIKSLYHLISKSVPNLPTDNIVVTNQFFEYFDLENSNDTSG 231

Query: 215 KLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           K +TA           L + + I+ +++  +   L+  +G +    +V A+++  TQ+ R
Sbjct: 232 KTITAQ----------LDVKKQIERDVQRQVQSMLSTLMGPEKVVVSVSADIDF-TQENR 280

Query: 275 E 275
           E
Sbjct: 281 E 281


>gi|149908457|ref|ZP_01897120.1| flagellar biosynthesis; basal-body MS(membrane
           andsupramembrane)-ring and collar protein [Moritella sp.
           PE36]
 gi|149808620|gb|EDM68555.1| flagellar biosynthesis; basal-body MS(membrane
           andsupramembrane)-ring and collar protein [Moritella sp.
           PE36]
          Length = 569

 Score = 83.6 bits (205), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 98/426 (23%), Positives = 192/426 (45%), Gaps = 43/426 (10%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
           FF +   L R  ILILA  I + +++F+    +   P    L        +  +   L +
Sbjct: 35  FFTNADIL-RQIILILALAISLTLVVFIL--LWGKEPEMRPLGTYPTAELIETLDF-LDQ 90

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
             ID+ I  NG ++SV +      ++ L   GL +++   G ++  +   FG++   Q +
Sbjct: 91  EKIDYTI--NGDTVSVSAEQYQNIKLRLRRSGL-TTTELQGDDILMQDMGFGVS---QRV 144

Query: 130 TRVR---ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY- 185
            R R     E +IAR ++    +  A+V + +P    F K   +P+A+V++   N +   
Sbjct: 145 ERERLKLGRERQIARALEEFKQVSKAQVLLAIPKENVFAKRNKKPSATVVLTVRNSAALS 204

Query: 186 -KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG----KSLSIVQAIQHE 240
            ++ +++  LVA+AV  L+   VT+ D  G+LL  N   +++L     +   +V+  + E
Sbjct: 205 QENIDSMVQLVASAVQGLEPTRVTLTDQNGRLL--NSGSQDMLAAKGRREFEMVKNHERE 262

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL---------S 291
               I+  L   LGV N+ + V   ++    +  +  ++PD    RS  L         +
Sbjct: 263 YRTKIDSILMPILGVSNYTAEVDVSMDFSVTEQTQKRFNPDLPAVRSEMLLERQSFGNGN 322

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDR----KVPLPRSLENTDKKEEQSNYEINTKSIAT 347
           +    + T+QP     ++ ++P  +D       P+ +S     +KE   NYE++T    T
Sbjct: 323 QGIPGALTNQP----PLDADIPEEADAGNAAAGPIGQS-----QKESTRNYELDTTISHT 373

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
                 ++RLS++V ++        G    + +  + +A I +++    G N  RGD + 
Sbjct: 374 KSQTGVIQRLSVSVAIDYINSVGADGALVREPRSQAEIANIRRVLQGGIGFNVNRGDNLE 433

Query: 408 ITSMDF 413
           + ++ F
Sbjct: 434 VVAIPF 439


>gi|148976413|ref|ZP_01813119.1| flagellar M-ring protein [Vibrionales bacterium SWAT-3]
 gi|145964236|gb|EDK29492.1| flagellar M-ring protein [Vibrionales bacterium SWAT-3]
          Length = 580

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 90/417 (21%), Positives = 185/417 (44%), Gaps = 40/417 (9%)

Query: 19  RTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76
           R  +L+L+  I V   +MLF    F+V  P    L    E  ++  +   L +  I++ +
Sbjct: 54  RQVVLVLSISICVALIVMLF----FWVKEPEMRPLGA-YETEELIPVLDYLDQQKIEYSL 108

Query: 77  SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136
              G++ISVP+S     ++++   GL +   N+G ++  +   FG++  +++     + E
Sbjct: 109 E--GNTISVPASEYNSLKLNMVRAGL-NQERNAGDDILMQDMGFGVSQRLEQERLKLSRE 165

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHL 194
            ++A+ I+ +  +  A+V + +P    F +     +ASV +     +  K  E  ++  +
Sbjct: 166 RQLAKAIEQMKQVRKAQVLLALPKQSVFVRHNQEASASVFLTLKTGTNLKQQEVDSVVDM 225

Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN--------IN 246
           VA+AVP +    +TV D  G+LL++   +       +S  +  +HE+E N        I+
Sbjct: 226 VASAVPGMKTSRITVTDQHGRLLSSGSQD------PMSAARRKEHELERNQEQALREKID 279

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET------- 299
             L   LG  N+ + V  +L+    +     +DP++   RS    +D     T       
Sbjct: 280 SILIPILGFGNYTAQVDIQLDFSAVEQTRKRFDPNTPATRSEYTLEDYNNGNTVAGIPGA 339

Query: 300 --SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
             +QP S  ++ Q++  + D  +    + + +  KE   N+E++T           + R 
Sbjct: 340 LSNQPPSDASIPQDVAQMKDGAM----TGQGSVHKEATRNFELDTTISHERKQTGTVNRQ 395

Query: 358 SIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           +++V + ++  +    G         S +  I +++    G +  RGD + + SM F
Sbjct: 396 TVSVAIKDRQSINPDTGEVVHTPIPASEINAIRQVLIGTVGFDESRGDLLNVLSMQF 452


>gi|157364749|ref|YP_001471516.1| flagellar M-ring protein FliF [Thermotoga lettingae TMO]
 gi|157315353|gb|ABV34452.1| flagellar M-ring protein FliF [Thermotoga lettingae TMO]
          Length = 536

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 108/485 (22%), Positives = 228/485 (47%), Gaps = 42/485 (8%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           I + L  F++    L R   ++ + + +  I++ +    FV +P Y  L   L       
Sbjct: 7   IQEYLKGFYEKWKGLPRGNKILFSGIAVSIIIVGILTIIFVAAPRYTLLVSGLTDEQSGY 66

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +   L    +++++ + G  +      V + R+ LA+ G+  +++  G+E+ D+  SFG 
Sbjct: 67  LIQQLETMGVEYKV-EPGRVLVSDKYNVYELRMRLASMGVLGATTK-GFEILDQ-QSFGA 123

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAIN 181
           TSF +++    AL+GE+ R+I +ISG+ +ARVH+ +P    + R   A P ASV++  + 
Sbjct: 124 TSFDKQVRYQVALQGELERSIMTISGVRSARVHLTLPKYTYYVRGEMAEPKASVLV-VLQ 182

Query: 182 PSVYKSAEAIR----HLVAAAVPNLDMGDVTVLDSTGKLL----TANEMERNILGKSLSI 233
           P    S   I+     LVA AV  + + +V V+D   ++L    TA++ +  +      +
Sbjct: 183 PGQDLSQNQIKGIMVELVAGAVEGMKLENVKVIDQMSRVLSDKVTASQ-DMLLASNRAEL 241

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI-REIV-YDPDSKVERSIRLS 291
             +++   +  I + L +  G    R  V+ ++ ++ +++ R++  Y+P ++    +R  
Sbjct: 242 KMSLESYYQKKIKQTLESVFGPS--RVEVIPDIKLNWERVERQLTKYEPATRQGGIVRSQ 299

Query: 292 KDAQRSETSQPES--AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQS----NYEINT--K 343
           +       + P +  AV  + N+P         P +        E+S    NYE+NT  +
Sbjct: 300 EQESEKSANLPATGGAVGTDSNIPPT------YPTTTSQGTSTYERSHTITNYELNTVVE 353

Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403
           ++    +  +++ LS++V+++    +  + ++ D+ + + +   ++ +V    G NS   
Sbjct: 354 NVVQNKEG-EIDTLSLSVIIDA---SSSVFQNFDEAERERWANIVSDLVEKGIGANS--S 407

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDI-LSRHFATVIN--ALVFLVGTLLVTFLGLHAL 460
           D     S+ FL          Q S  +I   R F  ++   +L+F +G +L  +L +   
Sbjct: 408 DPNLAVSVAFLPFDRTFEEEYQKSLSEIERKRRFTMMVTGVSLLFALGFMLF-YLMIIQF 466

Query: 461 RRLHN 465
           RR+ +
Sbjct: 467 RRIRS 471


>gi|299534787|ref|ZP_07048117.1| flagellar MS-ring protein [Lysinibacillus fusiformis ZC1]
 gi|298729875|gb|EFI70420.1| flagellar MS-ring protein [Lysinibacillus fusiformis ZC1]
          Length = 531

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 132/282 (46%), Gaps = 17/282 (6%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
           QF+ S +   + +I+++ SV+ V I L     FF +   Y  LY  L   ++ ++  AL 
Sbjct: 14  QFWTSRSK--KQKIVMIGSVVGV-IALAAIVTFFASKTTYVPLYKDLSTREIGQVKEALD 70

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
              + ++I+  G+SI VP   V    + LA++G P + S   Y  F   + FG+T     
Sbjct: 71  SQGVTYQIAPGGTSILVPEEQVDSLLVQLASEGYPQTGS-IDYS-FANSSGFGMTDNEFN 128

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINPSVYKS 187
           + +  A E EIA+  +++ G+  A+V I +P+ G F   +    TAS+++   +P  YK 
Sbjct: 129 LLKKAATETEIAKLFKNLEGVKDAKVMITVPEEGVFVTDVQGEATASIVLNT-DPG-YKF 186

Query: 188 AE----AIRHLVAAAVPNLDMGDVTVLDSTGKLL-----TANEMERNILGKSLSIVQAIQ 238
            E     + +LV+ ++PNL   ++ + +   +       TA+          L + + ++
Sbjct: 187 TEQQITTMYNLVSKSIPNLKTENIVISNQFSEYFDLNAATADGTSTTTAEGQLQMKKLVE 246

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP 280
            +++  +   L   +G D    +V  +++   +   E +  P
Sbjct: 247 RDLQRQVQNMLGTLMGQDKVMVSVTTDIDFKKENREENLVTP 288


>gi|91791422|ref|YP_561073.1| secretory protein YscJ/FliF [Shewanella denitrificans OS217]
 gi|91713424|gb|ABE53350.1| secretory protein YscJ/FliF [Shewanella denitrificans OS217]
          Length = 439

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 99/413 (23%), Positives = 188/413 (45%), Gaps = 61/413 (14%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M  + + ++FF +G SL               ++L +   ++V       L+  L  + +
Sbjct: 4   MEKITKKMRFFIAGISL---------------MLLTLITLWWVIQDSKQVLFSGLSQATL 48

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
              +  L  + I +++   G+SI V SS   +AR+ +A +    S++ +G+EL++  +  
Sbjct: 49  TEYTAKLEASGIGYQV--EGTSIFVASSDSNQARV-VAMEDSIQSNNVTGFELYEN-SDL 104

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           G T   Q    +RAL+GEI RT+   + I  ARVH+ +P    F        ASV +  +
Sbjct: 105 GATERAQHANYLRALQGEIERTLTGFNYIKKARVHLTLPQKRLFMSQNQLTKASVTLFTV 164

Query: 181 NPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQ 238
           +    ++   EAI+ LV +AV +L +  V V+D  G+     E + ++   +L++ ++ +
Sbjct: 165 DHYQPRTIDIEAIKQLVVSAVEDLTIDQVVVIDGAGQ-WGVFEPQGDLSSPNLALRRSTE 223

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR--LSKDAQR 296
             +E  + + L A+    +  +AV  ELN DT +I E          ++I+   S+    
Sbjct: 224 SYLEQKVLQVLVAYFSASSISAAVAVELNTDTVKIHET---------KAIKGDGSQGLIS 274

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
           SET   E+         H+SD   P  ++L N      +  Y     +  T     ++ R
Sbjct: 275 SETKFEET---------HLSDDNKPGSKTLRN------EVTYAHGALTQETEQAPGQILR 319

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
           L+ AV +N     E+              A+I++++    G +S+R D+I+++
Sbjct: 320 LTAAVSINAEVAPEL-------------QAQISELIKNTIGFDSQRDDSISVS 359


>gi|308068652|ref|YP_003870257.1| flagellar M-ring protein FliF [Paenibacillus polymyxa E681]
 gi|305857931|gb|ADM69719.1| flagellar M-ring protein FliF [Paenibacillus polymyxa E681]
          Length = 527

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 91/364 (25%), Positives = 168/364 (46%), Gaps = 28/364 (7%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           + +IL+++++  + I + +    F  +  Y+  +  L  +D   +   L  A I ++++ 
Sbjct: 22  KQKILLVSTLAFIIIAVVVLTMQFTKT-EYEVAFRDLNANDAAGVIKYLDSAGIPYQLNA 80

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS-FGLTSFMQEITRVRALEG 137
            G+ ISVP++   KA++ + +QGL    S  G   FD+ +S  G+T     +    AL G
Sbjct: 81  GGTQISVPTANADKAKVDVGSQGLIQKGS-IGMSAFDQSSSAIGMTENEFNVKYNNALNG 139

Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-AINPSVYKSAEAIR---H 193
           EI + ++ + G+ +++  I MP    F  +  +  AS  I+    P    + +AI    +
Sbjct: 140 EIQQLLERMDGVQSSKAVINMPKENIFAGLEEKDKASASIQMEFEPGFTPNQQAIDGYFN 199

Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEM----NINKAL 249
           LV  AVPNL + ++T+ +   +L+   +  +  L   +    A+Q + E     N+ + L
Sbjct: 200 LVKTAVPNLPVENITITNKEYELIPTAKGGQGGLTSGVQENMALQKKFESDVRNNVQQFL 259

Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDP-DSKVERSIRLSKDAQRSETSQPES---- 304
           +  +G D     V+++LN D    +E +  P D    + I +S  AQ+ + S   S    
Sbjct: 260 SKIVGDDKVNVLVMSQLNFDKVTSKEQMVTPVDQTKMKGIEIS--AQQIQESYTGSSGQT 317

Query: 305 ---AVTVEQNMPHVSDRKVPLPRSLENT--DKKEEQSNYEINTKSIATTHDNYKLERLSI 359
              A T  Q++P       P   +  NT  DK     NYE+N  +       Y ++ L+I
Sbjct: 318 GGVAGTGTQDVPG-----YPGGANSGNTSSDKSSSTINYEVNRIARDIIQSPYTVKDLTI 372

Query: 360 AVVV 363
            V V
Sbjct: 373 NVAV 376


>gi|308048752|ref|YP_003912318.1| flagellar M-ring protein FliF [Ferrimonas balearica DSM 9799]
 gi|307630942|gb|ADN75244.1| flagellar M-ring protein FliF [Ferrimonas balearica DSM 9799]
          Length = 583

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 94/417 (22%), Positives = 180/417 (43%), Gaps = 44/417 (10%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LILA  I + I +F+    +   P Y  L  ++E  ++      L +  + +++  NG++
Sbjct: 57  LILALAISLAIAVFLI--IWAQEPSYRPLG-QMETQELIDTLDFLDQQKLPYQL--NGNT 111

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           ISVP       R+ L   GL  +     +   D  + FG++  M++     + E  +A  
Sbjct: 112 ISVPEDRFADIRLMLTRNGLGPARPQQDFLTQD--SGFGVSQRMEQARLKHSQEQTLASA 169

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVP 200
           ++ +  +  ARV + +P    F +    P+A+V++     +  + +E  A+  +VA+AV 
Sbjct: 170 VEELRSVQRARVILALPQQNVFARQQREPSATVVVTLNRGTELRQSEVDAVVDIVASAVH 229

Query: 201 NLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKA----------LA 250
            L    VTV D  G+LL +        G    I    + E+E+ I +           L 
Sbjct: 230 GLKPARVTVTDQHGRLLNS--------GSQDGISAQARRELELRIQQEQLYREKIDSILI 281

Query: 251 AFLGVDNFRSAVVAELNMDTQQIREIV--YDPDSKVERSIRLSKDAQRSE---------T 299
             LG+  + + V  ++ MD   + E    Y+PD    RS  L +D Q            T
Sbjct: 282 PVLGIGRYSAQV--DVTMDFSAVEETSRRYNPDMPAVRSEMLIEDNQSGSGPVGIPGALT 339

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           +QP  A  + Q +      +    R     ++ E   N+E+++    T      + R+++
Sbjct: 340 NQPPIASEIPQQVEGAGQDE----RLASGRNRSEVTRNFELDSTISHTRQQVGTVRRVTL 395

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           +V V+   +    G +      ++ LA I +++  + G N+ RGD + + S+ F ++
Sbjct: 396 SVAVDHKPVAGADGATTMAPLSETELASIRRLLMGSVGFNAARGDVLEVVSVPFADD 452


>gi|288553065|ref|YP_003425000.1| flagellar MS-ring protein [Bacillus pseudofirmus OF4]
 gi|288544225|gb|ADC48108.1| flagellar MS-ring protein [Bacillus pseudofirmus OF4]
          Length = 524

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 152/339 (44%), Gaps = 25/339 (7%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110
           LY  L + +  +I   L    I   ISDNG++I VP +MV   ++ LAA+G+P S S   
Sbjct: 53  LYSNLTLQETGQIKETLDARGIPAEISDNGTTILVPEAMVDSLKVDLAAEGIPRSGSID- 111

Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170
           Y  F     FG+T     +     ++ E+   I++I+G+  A V I +P+   +      
Sbjct: 112 YSFFQDQMGFGMTDNEFSVMERGLMQTELQDLIRNINGVNHANVMITLPEESVWLNTTQE 171

Query: 171 PTASVMIRAINPSV---YKSAEAIRHLVAAAVPNLDMGDVTVL---------DSTGK--- 215
              + ++  + P         +A+ HLV+ +VPNL + ++ ++         D+ G    
Sbjct: 172 AATASIVVDLAPGYQLDQNQVKALYHLVSKSVPNLPIENIVIMNQMFEDYFYDNDGNQST 231

Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
            L+A E +R       +I + I+ ++ +N+ + L   +G D    +V  +++   +  +E
Sbjct: 232 TLSAFEQQR-------TIQREIERDLTLNLQRMLGTVVGQDKVLVSVTTDIDFTQENRQE 284

Query: 276 IVYDP-DSKVERSIRLS-KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKE 333
            + +P D +    I +S +    + T +   A  VE     + +    + +     ++ E
Sbjct: 285 SLVEPVDPENIEGIAVSIERVTETYTGEGTPAGGVEGTGEGIPNFPGAVGQGESEYERTE 344

Query: 334 EQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372
           ++ N E+N  +       YK+  L I V+V      +VL
Sbjct: 345 DRINNEVNRINRDIVESPYKIRDLGIQVMVEPPEGMDVL 383


>gi|261252322|ref|ZP_05944895.1| flagellar M-ring protein FliF [Vibrio orientalis CIP 102891]
 gi|260935713|gb|EEX91702.1| flagellar M-ring protein FliF [Vibrio orientalis CIP 102891]
          Length = 562

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 91/417 (21%), Positives = 186/417 (44%), Gaps = 40/417 (9%)

Query: 19  RTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76
           R  +L+L+  I V   +MLF    F+V  P    L V  E  ++  +   L +  +D+++
Sbjct: 35  RQVVLVLSISICVALIVMLF----FWVKEPEMRPLGV-YETEELIPVLDYLDQQKLDYKL 89

Query: 77  SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136
              G++I VP+S     ++ +   GL ++   +G ++  +   FG++  +++     + E
Sbjct: 90  E--GNTILVPTSDFNTLKLDMVRAGL-NNEKQAGDDILLQDMGFGVSQRLEQERLKLSRE 146

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHL 194
            ++++ I+ +  +  ARV + +P    F +     +ASV +     +  K  E  ++  +
Sbjct: 147 RQLSKAIEEMKQVRKARVLLALPKQSVFVRHNQEASASVFLTLKTGTNLKQEEVDSVVDM 206

Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN--------IN 246
           V++AVP +    +TV D  G+LL++   +      + S  +  +HE+E          I+
Sbjct: 207 VSSAVPGMKPNRITVTDQHGRLLSSGTQD------AASSARRKEHELERKQEQALREKID 260

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE-------- 298
             L   LG  N+ + V  +L+    +     +DP++   RS    +D             
Sbjct: 261 SVLIPILGFGNYTAQVDIQLDFSAVEQTRKSFDPNTPSTRSEYTLEDYNNGSVVAGVPGA 320

Query: 299 -TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
            ++QP +  ++ Q++  + D  +    S+     KE   N+E++T           + R 
Sbjct: 321 LSNQPPADASIPQDVAQMKDGSLLGQGSVH----KEATRNFELDTTISHERRQTGVVNRQ 376

Query: 358 SIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           ++AV V N+  +    G +  Q   D+ L  I +++    G +  RGD + + SM F
Sbjct: 377 TVAVAVKNRAIVNPDTGETTYQPMSDAELNSIKQLLIGTVGFSEARGDLLNVLSMQF 433


>gi|225619610|ref|YP_002720867.1| flagellar MS-ring protein [Brachyspira hyodysenteriae WA1]
 gi|225214429|gb|ACN83163.1| flagellar MS-ring protein [Brachyspira hyodysenteriae WA1]
          Length = 542

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 100/416 (24%), Positives = 179/416 (43%), Gaps = 56/416 (13%)

Query: 91  GKARIHLAAQG-LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149
            KA + L  +G +P+     G+ELFD     G+T    +I + R+L   I + +  +  +
Sbjct: 68  AKAELELVKEGRMPTGVD--GWELFD-APRIGITDVELDINKRRSLTKAITQLLTKLDFV 124

Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSAEAIR---HLVAAAVPNLDM 204
             A V +  P       I +  TASV+I+A      V +  + +R    L+A  V  L  
Sbjct: 125 QEATVDLAFPKKEYLTDIDSPVTASVVIKAQPFKEEVLRDPKTVRGLQQLIAMGVDKLKP 184

Query: 205 GDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
             VT+ DSTG +LT     A  ++  +  + L IV   + +IE  I + L      +   
Sbjct: 185 EFVTITDSTGYVLTDFTDEAANLKLKVAQEELKIVDRERKKIENKIRQTLGRIY-TNRVE 243

Query: 260 SAVVAELNMDTQQIRE-----IVYDPD------------SKVERSIRLSKDAQRSETSQP 302
           + +  EL  D   I       I+   D            +KV+ S R   +  + +   P
Sbjct: 244 TTIALELIWDDVSITNNLVLPIILKEDDPATPYDDSQFTNKVQVSTRTVTEDWKGQQFIP 303

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
           + A   E+N+P     K    ++   TD    Q NYE++ +  A    +Y++ ++S AV 
Sbjct: 304 QGAAGAEENVPPGYKDKSDRWQTYTKTDS---QDNYELSKRYEAIKKGSYQIGKISAAVA 360

Query: 363 VNKGRLTEVLGRSADQGKID--SYLAE-----------INKIVSAATGINSRRGDTITIT 409
           ++ GR T+   ++ D    +  SY+ E           +  +V AA G + +RGD +++T
Sbjct: 361 LD-GRWTKSYDQNGDPIITNGTSYVREYHPVTAEEIRNVTSLVQAAIGYDLKRGDQVSVT 419

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465
            + F     FN+   +     ++   F  +   L+  + +LL+ F+   A+R +  
Sbjct: 420 HIQFDHWDRFNAEDAK-----LMRDRF--IRKTLIITMISLLILFVLALAIRAIQK 468


>gi|88858108|ref|ZP_01132750.1| flagellar M-ring protein [Pseudoalteromonas tunicata D2]
 gi|88819725|gb|EAR29538.1| flagellar M-ring protein [Pseudoalteromonas tunicata D2]
          Length = 574

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 96/426 (22%), Positives = 189/426 (44%), Gaps = 43/426 (10%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
            G  + R   LI+A  I V I +F+    +   P    L   +   ++ +    L    +
Sbjct: 40  GGVDVLRQVTLIIALTICVAIAVFII--IWARQPDMRPLGT-MPTDELIQTLDFLDAQKV 96

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
           D+++   G++I VP +     ++ +A +GL   + NSG ++  +   FG++  ++     
Sbjct: 97  DYKLE--GNTIYVPETGYQNIKLMMAREGL-DQAPNSGTDILMQDMGFGVSQRLERERLK 153

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--A 190
            + E ++ARTI+ +  +V A+V + +P    F +    P+A+V++      +    E  +
Sbjct: 154 HSREQQLARTIEELQNVVRAKVLLALPKENVFARQEKSPSATVVLTLKRGRILNGEEVDS 213

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEM------- 243
           I  ++A+AV  L+   VTV D  G+LL +   +      SL+     ++E+E        
Sbjct: 214 IVDIIASAVQGLEPARVTVTDQNGRLLNSGSQD------SLAARSRKEYEVERKREQEYI 267

Query: 244 -NINKALAAFLGVDNFRSAVVAELNMDTQQIREIV--YDPDSKVERSIRLSKDAQRSETS 300
             I+  +   +G+ N+ + V  +L MD   + E    Y+PD    RS     +  R E +
Sbjct: 268 EKIDSIMIPVVGLGNYTAQV--DLVMDFSSVEETQKRYNPDLPAVRS-----EMTREENN 320

Query: 301 QPESAVTVE---QNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHD 350
               AV +     N P V +  +P          S  + ++KE   NYE++T        
Sbjct: 321 IGGLAVGIPGALSNQPPV-NSAIPEKAGQGSASNSAPSRNQKEATRNYELDTTISHKRQQ 379

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSAD-QGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
              + R+S++V +N        G  A  + +    L+ I +++    G + +RGD + + 
Sbjct: 380 TGVIRRISVSVAINYNSTAGADGAQATREPRSQQELSNIRRLLQGGIGFDMQRGDALEVV 439

Query: 410 SMDFLE 415
           ++ F++
Sbjct: 440 TVPFVQ 445


>gi|300871679|ref|YP_003786552.1| flagellar M-ring protein FliF [Brachyspira pilosicoli 95/1000]
 gi|300689380|gb|ADK32051.1| flagellar M-ring FliF protein, FliF [Brachyspira pilosicoli
           95/1000]
          Length = 562

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 116/500 (23%), Positives = 206/500 (41%), Gaps = 68/500 (13%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVK-LEVSDVN 61
           ++ Q+   F   T + +    IL  V++V +   +A  FF +      L+   L   D  
Sbjct: 4   LIGQVKNIFAKTTKVQKA---ILIGVLVVALGAIVATVFFTSRRAGTLLFQNALTQEDAR 60

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG-LPSSSSNSGYELFDKVNSF 120
            +   L   NI ++   NG       +   KA + L  +G +P      G+ELFD     
Sbjct: 61  NVIAVLDANNIKYQYR-NGFITLNNEADKAKAELELVKEGRMPMGVD--GWELFD-APRI 116

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA- 179
           G+T    +I + R+L   I + +  +  +  A V +  P       + +  TASV+I+A 
Sbjct: 117 GITDAELDINKRRSLTKAITQLLTKLDFVQEATVDLAFPKKEYLTDVDSPVTASVVIKAQ 176

Query: 180 -INPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKS 230
                + +  + +R    L+A  V  L    VT+ DSTG +LT     A  ++  +  + 
Sbjct: 177 PFKEEILRDPKTVRGLQQLIAMGVDKLKPEFVTITDSTGYVLTDFTDEAANLKLKVAQEE 236

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE-----IVYDPD---- 281
           L IV   + +IE  I + L      +   + +  EL  D   I       I+   D    
Sbjct: 237 LKIVDRERKKIENKIRQTLGRIY-TNRVETTIALELIWDDISITNNLVLPIILKEDDPAT 295

Query: 282 --------SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKE 333
                   +KV+ S R   +  + +   P+ A   E+N+P     K    ++   TD   
Sbjct: 296 PYDDSQFTNKVQVSSRTVTEDWKGQQFIPQGAAGAEENVPPGYKDKTDRWQTYTKTD--- 352

Query: 334 EQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ--GKIDSYLAE---- 387
            Q NYE++ +  A    +Y++ ++S AV ++ GR T+V   + +       SYL E    
Sbjct: 353 SQDNYELSKRYEAIKKGSYQIGKISAAVALD-GRWTKVYDANGNAIITNGSSYLREYHPV 411

Query: 388 -------INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440
                  +  +V AA G + +RGD +++T + F     FN+   ++   + + R      
Sbjct: 412 TADEIKNVTALVQAAIGYDLKRGDQVSVTHIQFDHWDRFNAEDAKLLRNNFIKR------ 465

Query: 441 NALVFLVGTLLVTFLGLHAL 460
                    L+++ +GL AL
Sbjct: 466 --------VLIISMIGLLAL 477


>gi|310641543|ref|YP_003946301.1| flagellar m-ring protein flif [Paenibacillus polymyxa SC2]
 gi|309246493|gb|ADO56060.1| Flagellar M-ring protein FliF [Paenibacillus polymyxa SC2]
          Length = 527

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 168/364 (46%), Gaps = 28/364 (7%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           + +IL+++++  + I + +    F  +  Y+  +  L  +D   +   L  A I ++++ 
Sbjct: 22  KQKILLVSTLAFIIIAIVVLTMQFTKT-EYEVAFQDLNANDAAGVIKYLDSAGIPYQLNA 80

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS-FGLTSFMQEITRVRALEG 137
            G+ ISVP++   KA++ + +QGL    S  G   FD+ +S  G+T     +    AL G
Sbjct: 81  GGTQISVPTANADKAKVDVGSQGLIQKGS-IGMSAFDQSSSAIGMTENEFNVKYNNALNG 139

Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-AINPSVYKSAEAIR---H 193
           E+ + ++ + G+ +++  I MP    F  +  +  AS  ++    P    + +AI    +
Sbjct: 140 EVQQLLERMDGVQSSKAVINMPKENIFAGLEEKDKASASVQMEFEPGFTPNQQAIDGYFN 199

Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEM----NINKAL 249
           LV  AVPNL + ++T+ +   +L+   +  +  L   +    A+Q + E     N+ + L
Sbjct: 200 LVKTAVPNLPVENITITNKEYELIPTAKGGQGGLTSGVQENMALQKKFESDVRNNVQQFL 259

Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDP-DSKVERSIRLSKDAQRSETSQPES---- 304
           +  +G D     V+++LN D    +E +  P D    + I +S  AQ+ + S   S    
Sbjct: 260 SKIVGDDKVNVLVMSQLNFDKVTSKEQMVTPVDQTKMKGIEIS--AQQIQESYTGSSGQT 317

Query: 305 ---AVTVEQNMPHVSDRKVPLPRSLENT--DKKEEQSNYEINTKSIATTHDNYKLERLSI 359
              A T  Q++P       P   +  NT  DK     NYE+N  +       Y ++ L+I
Sbjct: 318 GGVAGTGTQDVPG-----YPGGANSGNTSSDKSSSTINYEVNRIARDIIQSPYTVKDLTI 372

Query: 360 AVVV 363
            V V
Sbjct: 373 NVAV 376


>gi|117620247|ref|YP_855904.1| flagellar MS-ring protein [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117561654|gb|ABK38602.1| flagellar M-ring protein FliF [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 560

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 93/419 (22%), Positives = 185/419 (44%), Gaps = 26/419 (6%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           F S T + R   LIL   I + I +F+    +   P    L        V  +   L + 
Sbjct: 21  FLSNTDVLRQITLILGLAICLAIAVFIL--LWGKEPDMRPLGTYTTQELVKTLDY-LDQQ 77

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS--SNSGYELFDKVNSFGLTSFMQE 128
            I +++  +G S+ V +      R+ L   GL +++  ++ G ++  K +SFG++  M+ 
Sbjct: 78  KIPYQV--DGKSVLVSAENYSSIRLALTRAGLANATDTTSDGEDILLKDSSFGVSQRMES 135

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS- 187
                + E ++A  I+    +  A+V + +P    F +   +P+A+V++     ++ +  
Sbjct: 136 ERLKLSRERQLASAIEQFQNVAKAQVLLAIPKDNVFARNERKPSATVVLSLKGNALGQGE 195

Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNI 245
            ++I  +VA+AV  L+   VTV D  G+LL +   +       K  ++ Q  + E +  I
Sbjct: 196 VDSIVDMVASAVHGLEPTRVTVTDQNGRLLNSGSQDPVSAQTRKEFAMQQKQELEYKQKI 255

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS-IRLSKDAQRSE------ 298
           +  L   LG DN+ + V   L+   Q+     Y+PD    RS + + +++          
Sbjct: 256 DAILIPVLGADNYTAEVDLSLDFSQQEQTRKTYNPDLPAVRSEMTMEENSANGSNGGVPG 315

Query: 299 --TSQPESAVTVEQNM--PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
             ++QP +A  + Q    P+         RS     +KE   N+E++T           +
Sbjct: 316 ALSNQPPAASNIPQQATGPNAETTASSSGRS-----RKEATRNFELDTTVSHIRRQMGGI 370

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
            R++++V V+    T   G+   + +    L  + +++S   G +  RGDT+ + ++ F
Sbjct: 371 RRMTVSVAVDYKASTAADGKVTREPRTQPELDTLRRLLSGGLGFDVTRGDTLEVVAIPF 429


>gi|323490142|ref|ZP_08095362.1| flagellar MS-ring protein [Planococcus donghaensis MPA1U2]
 gi|323396190|gb|EGA89016.1| flagellar MS-ring protein [Planococcus donghaensis MPA1U2]
          Length = 546

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 112/234 (47%), Gaps = 10/234 (4%)

Query: 20  TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN 79
           T+  ++ S  L  I+L +   FF N  ++  LY  L  ++   I  A+    I   +S +
Sbjct: 23  TKWSVIGSFFLTLIILGVFV-FFSNQSNFSVLYSDLTPAEAGEIKTAIEAQAIPVEVSSD 81

Query: 80  GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEI 139
           G +ISVP   +   ++ LAA+G+P  + N  Y  F +    G+T    ++    A++ E+
Sbjct: 82  GKTISVPEEHLANLKVSLAAEGIP-KNGNVNYGTFSENMGLGMTDRHFDVVERDAMQNEL 140

Query: 140 ARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAINPSVY--KSAEAIRHLVA 196
           A  I+ I G+  A V I +P    +     +  TAS++++  +      K    + HL++
Sbjct: 141 AYLIKQIDGVTEANVMITLPKENIWITDEEQTSTASIVVKGDSTLQLDQKQINGLYHLIS 200

Query: 197 AAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ---AIQHEIEMNINK 247
            +VP+L    + ++D  G++      + N L  +LS+ Q    IQ  IE +I +
Sbjct: 201 KSVPSLPADQIVIMDQNGQVFEV--QDENQLDTNLSVYQQHREIQKGIEQDIQR 252


>gi|24374740|ref|NP_718783.1| flagellar MS-ring protein [Shewanella oneidensis MR-1]
 gi|24349402|gb|AAN56227.1|AE015760_6 flagellar M-ring protein FliF [Shewanella oneidensis MR-1]
          Length = 553

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 98/425 (23%), Positives = 195/425 (45%), Gaps = 22/425 (5%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  L  K+E  ++ ++   L +  I ++I  +   + VP     + ++ L+  
Sbjct: 44  IWAQEPEYRPLG-KMETQEMVQVLDVLDKNKIKYQI--DVDVVKVPEDKYQEVKMMLSRA 100

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           G+  S++ S  +   + + FG++  M++     + E  +AR I+ +  +  A+V + +P 
Sbjct: 101 GI-DSAATSKQDFLTQDSGFGVSQRMEQARLKHSQEENLARAIEQLQSVSRAKVILALPK 159

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
              F +  A+P+A+V+I      + +   +AI  +VA+AV  L+   VTV DS G+LL +
Sbjct: 160 ENVFARNTAQPSATVVINTRRGGLGQGEVDAIVDIVASAVQGLEPSRVTVTDSNGRLLNS 219

Query: 220 NEME--RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
              +       + L +VQ  + E    I+  L+  LG DNF S V  +++MD   + +  
Sbjct: 220 GSQDGVSARARRELELVQQKETEYRTKIDSILSPILGHDNFTSQV--DVSMDFTAVEQTA 277

Query: 278 --YDPDSKVERS-IRLSKDAQRSETSQPESAVT----VEQNMPHVSDRKVPLPRSLENTD 330
             ++PD    RS + +  ++    T     A++    +E N+P  +        +  N+ 
Sbjct: 278 KRFNPDLPSLRSEMTVENNSTGGSTGGIPGALSNQPPMESNIPQEAATAATESVAAGNS- 336

Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVV---VNKGRLTEVLGRSADQGKIDSYLAE 387
            +E   N+E++T +I+ T     + R     V      G   E  G+ A   + +  L  
Sbjct: 337 HREATRNFELDT-TISHTRQQIGVVRRVSVSVAVDFKPGAAGEN-GQVARVARTEQELTN 394

Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447
           I +++  A G +++RGD + + ++ F++  + +    ++       R     + ALV LV
Sbjct: 395 IRRLLEGAVGFSAQRGDVLEVVTVPFMDQLVEDVPAPELWEQPWFWRAVKLGVGALVILV 454

Query: 448 GTLLV 452
             L V
Sbjct: 455 LILAV 459


>gi|296125414|ref|YP_003632666.1| flagellar M-ring protein FliF [Brachyspira murdochii DSM 12563]
 gi|296017230|gb|ADG70467.1| flagellar M-ring protein FliF [Brachyspira murdochii DSM 12563]
          Length = 567

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 98/404 (24%), Positives = 174/404 (43%), Gaps = 50/404 (12%)

Query: 91  GKARIHLAAQG-LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149
            +A + L  +G +P+     G+ELFD     G+T    +I + R+L   I + +  +  +
Sbjct: 93  ARAELELVKEGRMPTGVD--GWELFD-APRIGITDVELDINKRRSLTKAITQLLTKLDFV 149

Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSAEAIR---HLVAAAVPNLDM 204
             A V +  P       I +  TASV+I+A      V +  + +R    L+A  V  L  
Sbjct: 150 QEATVDLAFPKKEYLTDIDSPVTASVVIKAQPFKEDVLRDPKTVRGLQQLIAMGVDKLKP 209

Query: 205 GDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
             VT+ DSTG +LT     A  ++  +  + L IV   +  IE  I + L      +   
Sbjct: 210 EFVTITDSTGYVLTDFTDEAANLKLKVAQEELKIVDRERKNIENKIRQTLGRIY-TNRVE 268

Query: 260 SAVVAELNMDTQQIRE-----IVYDPD------------SKVERSIRLSKDAQRSETSQP 302
           + +  EL  D   I       I+   D            +KV+ S R   +  + +   P
Sbjct: 269 TTIALELIWDDVSITNNLVLPIILKEDDPTTPYDDSQFTNKVQVSSRTVTEDWKGQQFIP 328

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
           + A   E+N+P     K    ++   TD    Q NYE++ +  A    +Y++ ++S AV 
Sbjct: 329 QGAAGAEENVPPGYKDKSDRWQTYTKTD---SQDNYELSKRYEAIKKGSYQIGKISAAVA 385

Query: 363 VNKGRLTEVLGRSADQ--GKIDSYLAE-----------INKIVSAATGINSRRGDTITIT 409
           ++ GR T+V   + D      +SY+ E           +  +V AA G + +RGD +++T
Sbjct: 386 LD-GRWTKVYDVNGDPVITNGNSYVREYHPVTTEEIRNVTSLVQAAIGYDLKRGDQVSVT 444

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHF-ATVINALVFLVGTLLV 452
            + F     FN+   ++     + +    T+I+ L+  V  L++
Sbjct: 445 HIQFDHWDRFNAEDAKLMRDRFIKKTLIITMISLLILFVLALVI 488


>gi|27365280|ref|NP_760808.1| flagellar MS-ring protein [Vibrio vulnificus CMCP6]
 gi|320155664|ref|YP_004188043.1| flagellar M-ring protein FliF [Vibrio vulnificus MO6-24/O]
 gi|27361427|gb|AAO10335.1| flagellar M-ring protein FliF [Vibrio vulnificus CMCP6]
 gi|319930976|gb|ADV85840.1| flagellar M-ring protein FliF [Vibrio vulnificus MO6-24/O]
          Length = 581

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 100/428 (23%), Positives = 194/428 (45%), Gaps = 58/428 (13%)

Query: 19  RTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76
           R  +L+L+  I V   +MLF    F+V  P    L V  E  ++  +   L +  I++++
Sbjct: 55  RQVVLVLSISICVALIVMLF----FWVKEPEMRPLGV-FETEELIPVLDHLDQQKINYKL 109

Query: 77  SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136
             +G++I V +S     ++ +   GL + S+ +G ++  +   FG++  +++     + E
Sbjct: 110 --DGNTILVETSEFNSIKLDMVRSGL-NQSTQAGDDILLQDMGFGVSQRLEQERLKLSRE 166

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHL 194
            ++ + I+ +  +  A+V + +P    F +     +ASV +     S  K  E  +I  +
Sbjct: 167 RQLGKAIEEMKQVRKAKVLLALPKQSVFVRHNQEASASVFLTLNTGSNLKQQEVDSIVDM 226

Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN--------IN 246
           VA+AVP +    VTV D  G+LL +   +       +S  +  + E+E N        I+
Sbjct: 227 VASAVPGMKTSRVTVTDQHGRLLNSGSQD------PVSAARRKEQELERNQEQALREKID 280

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE-------- 298
             L   LG  N+ + V  E++    +     +DP++   RS    +D             
Sbjct: 281 SVLIPILGFGNYTAQVDIEMDFSAVEQTRKQFDPNTPATRSEYALEDYNNGNMVAGVPGA 340

Query: 299 -TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL--- 354
            ++QP +  ++ Q++  + D  V    S+    +KE   N+E++T     +H+  ++   
Sbjct: 341 LSNQPPADASIPQDVAQMKDGSVLGQGSV----RKESTRNFELDT---TISHERKQMGVI 393

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYL----AEIN---KIVSAATGINSRRGDTIT 407
            R ++AV + K R T     + D G + +Y     AEIN   +++    G +  RGD + 
Sbjct: 394 NRQTVAVAI-KDRAT----INPDTGDV-TYTPRSEAEINAIRQVLVGTVGFSENRGDLLN 447

Query: 408 ITSMDFLE 415
           + SM F E
Sbjct: 448 VLSMPFAE 455


>gi|194014358|ref|ZP_03052975.1| flagellar M-ring protein FliF [Bacillus pumilus ATCC 7061]
 gi|194013384|gb|EDW22949.1| flagellar M-ring protein FliF [Bacillus pumilus ATCC 7061]
          Length = 525

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 140/292 (47%), Gaps = 22/292 (7%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M +  + ++F+++ + L   +IL++  V  + I++ + +  F +S     L+  L  ++ 
Sbjct: 1   MQLRTKTVEFWRNRSKL--QKILMIGGVAALAIIITVVS-IFASSEKMVPLFRDLSEAEA 57

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +I   L   N+   +++NG++I VP       ++ LA++GLP  + N  Y  F   + F
Sbjct: 58  GQIKQELDGKNVKSELANNGTTILVPEKQADSLKVTLASEGLP-KTGNIDYSFFANNSGF 116

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG---ARPTASVMI 177
           GLT    ++ +V A + E++  I +I GI  ++V I +P    F  +G   +  +AS+++
Sbjct: 117 GLTDNEFDVLKVDATQTELSNLINTIDGIKDSKVMINLPKDSVF--VGEEQSNASASIVL 174

Query: 178 R-----AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS 232
           +      + P   K    + HL++ +VPNL   ++ ++D        N    +     + 
Sbjct: 175 QVERGYTLAPQQVK---GLYHLISKSVPNLKTENIVIMDQDSNYYDLNS-SSDSYASGMD 230

Query: 233 IVQAIQHEIEMN----INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP 280
             Q  + EIE N    I + L   +G +    +V  +++   ++ +E + +P
Sbjct: 231 AQQQKKEEIEKNLQRKIQQLLGTMMGQEKVAVSVTTDIDFTEEKRKEDLVEP 282


>gi|37680665|ref|NP_935274.1| flagellar MS-ring protein [Vibrio vulnificus YJ016]
 gi|37199414|dbj|BAC95245.1| polar flagellar M-ring protein FliF [Vibrio vulnificus YJ016]
          Length = 581

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 100/428 (23%), Positives = 194/428 (45%), Gaps = 58/428 (13%)

Query: 19  RTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76
           R  +L+L+  I V   +MLF    F+V  P    L V  E  ++  +   L +  I++++
Sbjct: 55  RQVVLVLSISICVALIVMLF----FWVKEPEMRPLGV-FETEELIPVLDHLDQQKINYKL 109

Query: 77  SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136
             +G++I V +S     ++ +   GL + S+ +G ++  +   FG++  +++     + E
Sbjct: 110 --DGNTILVETSEFNSIKLDMVRSGL-NQSTQAGDDILLQDMGFGVSQRLEQERLKLSRE 166

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHL 194
            ++ + I+ +  +  A+V + +P    F +     +ASV +     S  K  E  +I  +
Sbjct: 167 RQLGKAIEEMKQVRKAKVLLALPKQSVFVRHNQEASASVFLTLNTGSNLKQQEVDSIVDM 226

Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN--------IN 246
           VA+AVP +    VTV D  G+LL +   +       +S  +  + E+E N        I+
Sbjct: 227 VASAVPGMKTSRVTVTDQHGRLLNSGSQD------PVSAARRKEQELERNQEQALREKID 280

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE-------- 298
             L   LG  N+ + V  E++    +     +DP++   RS    +D             
Sbjct: 281 SVLIPILGFGNYTAQVDIEMDFSAVEQTRKQFDPNTPATRSEYALEDYNNGNMVAGVPGA 340

Query: 299 -TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL--- 354
            ++QP +  ++ Q++  + D  V    S+    +KE   N+E++T     +H+  ++   
Sbjct: 341 LSNQPPADASIPQDVAQMKDGSVLGQGSV----RKESTRNFELDT---TISHERKQMGVI 393

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYL----AEIN---KIVSAATGINSRRGDTIT 407
            R ++AV + K R T     + D G + +Y     AEIN   +++    G +  RGD + 
Sbjct: 394 NRQTVAVAI-KDRAT----INPDTGDV-TYTPRSEAEINAIRQVLVGTVGFSENRGDLLN 447

Query: 408 ITSMDFLE 415
           + SM F E
Sbjct: 448 VLSMPFAE 455


>gi|90406819|ref|ZP_01215011.1| flagellar M-ring protein [Psychromonas sp. CNPT3]
 gi|90312056|gb|EAS40149.1| flagellar M-ring protein [Psychromonas sp. CNPT3]
          Length = 571

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 92/431 (21%), Positives = 195/431 (45%), Gaps = 46/431 (10%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHY--------DNLYVKLEVSD 59
           L  F S   + R   +I+  +I++ I++ + +  +   P Y        D L   L+  D
Sbjct: 31  LATFFSNVDVLRQISMIIGLLIVLAIVVIIWS--WGKQPDYRPLGNYQTDELISTLDFLD 88

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
             +I+  L            G+S+ V +    K ++ +   GL   +++SG ++  +   
Sbjct: 89  KEKITYQLE-----------GNSVLVEAEQYQKIKLLMTRAGLTQDTNDSGDDILLQDMG 137

Query: 120 FGLTSFMQEITRVR---ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
           FG++   Q + R R   + E +I+  I S+  I  A+V + +P    F +   + +A+V+
Sbjct: 138 FGVS---QRVERERLKLSRERQISVAIMSMKNITKAQVLLAIPKQSVFARKERKASATVV 194

Query: 177 IRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS---L 231
           I         + E  +I  +VA++V  L    VTV D  G+LL +   +  +  +S    
Sbjct: 195 ITTSKSYTLSAQEIDSIVDIVASSVQGLSPNSVTVSDQRGRLLHSGSQD-GLSSRSSAEF 253

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
           ++ +  ++E +  I+  L   LG+ N+ S V   ++   ++  + +++P  K  RS  L 
Sbjct: 254 ALERGRENEYKSKIDAILIPILGLSNYTSEVDLAMDFTIKEETQKIFNPSKKSVRSEMLV 313

Query: 292 KDAQRSE---------TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINT 342
           +    +          ++QP +A ++ + +    D+K    +S+      EE  NYE++T
Sbjct: 314 ETKSTNSILGNIPGALSNQPPAASSIPEELRKDGDKK----KSVIGNSHNEETRNYEMDT 369

Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402
             +   H    ++RL+++V ++    T   G      + D+ + ++ +++    G++  R
Sbjct: 370 TVVHIKHKVGTIDRLAVSVALDYVPTTNEAGEVTYAPRTDAEVEKLRRLLMGGLGLDIER 429

Query: 403 GDTITITSMDF 413
           GD + + S+ F
Sbjct: 430 GDILEMASVRF 440


>gi|157692300|ref|YP_001486762.1| flagellar MS-ring protein [Bacillus pumilus SAFR-032]
 gi|157681058|gb|ABV62202.1| flagellar basal-body M-ring protein [Bacillus pumilus SAFR-032]
          Length = 530

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 139/292 (47%), Gaps = 22/292 (7%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M +  + ++F+++ + L   +IL++  V  + I++ + +  F +S     L+  L  S+ 
Sbjct: 6   MQLRTKTVEFWRNRSKL--QKILMIGGVAALAIIITVVS-IFASSEKMVPLFKDLSESEA 62

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +I   L    I   +++NG++I VP       ++ LA+QGLP +     Y  F   + F
Sbjct: 63  GQIKQELDGKKIKSELANNGTTILVPEKQADSLKVTLASQGLPKTGK-IDYSFFANNSGF 121

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG---ARPTASVMI 177
           GLT    ++ +V A + E++  I +I GI  ++V I +P    F  +G   +  +AS+++
Sbjct: 122 GLTDNEFDVLKVDATQTELSNLINTIDGIKDSKVMINLPKDSVF--VGEEQSNASASIVL 179

Query: 178 R-----AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS 232
           +      ++P   K    + HL++ +VPNL   ++ ++D        N    +     + 
Sbjct: 180 QVERGYTLSPQQVK---GLYHLISKSVPNLKTENIVIMDQDSNYYDLNS-SSDSYASGMD 235

Query: 233 IVQAIQHEIEMN----INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP 280
             Q  + EIE N    I + L   +G +    +V  +++   ++ +E + +P
Sbjct: 236 AQQQKKEEIEKNLQRKIQQLLGTMMGQEKVAVSVTTDIDFTEEKRKEDLVEP 287


>gi|329896193|ref|ZP_08271387.1| Flagellar M-ring protein fliF [gamma proteobacterium IMCC3088]
 gi|328921936|gb|EGG29302.1| Flagellar M-ring protein fliF [gamma proteobacterium IMCC3088]
          Length = 640

 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 96/188 (51%), Gaps = 2/188 (1%)

Query: 29  ILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSS 88
           +L+ ++LF+     +NS  Y ++   +   D      AL  +    RI+     I VP  
Sbjct: 73  VLLAVLLFVIFGSMLNSTGYRSISNGMSEPDRQASYDALLASQYKVRINPASGMIEVPDG 132

Query: 89  MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISG 148
              +A++ LA+QGLP S+   GY   ++  S   + FM+++    A+E E+A+TI  I  
Sbjct: 133 SYQQAKLFLASQGLPRSAIAGGYSALNENASMTQSQFMEQVQYNNAMELELAKTISQIDS 192

Query: 149 IVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGD 206
           I +ARVHI +     F +      ASV+++     V      ++I HLV+++VP +   D
Sbjct: 193 IESARVHIAVNKQSVFVRERMPSKASVVVKPYFGRVVTQPQVQSIIHLVSSSVPYMSTTD 252

Query: 207 VTVLDSTG 214
           VTV+D+ G
Sbjct: 253 VTVVDNYG 260


>gi|163801845|ref|ZP_02195742.1| flagellar M-ring protein [Vibrio sp. AND4]
 gi|159174353|gb|EDP59157.1| flagellar M-ring protein [Vibrio sp. AND4]
          Length = 580

 Score = 80.5 bits (197), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 89/422 (21%), Positives = 195/422 (46%), Gaps = 40/422 (9%)

Query: 19  RTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76
           R  +L+L+  I V   +MLF    F+V  P    L    E  ++  +   L +  I++++
Sbjct: 53  RQVVLVLSISICVALIVMLF----FWVKEPEMRPLGA-YETEELIPVLDYLDQQKINYKL 107

Query: 77  SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136
             +GS++SV SS     ++ +   G+ + ++ +G ++  +   FG++  +++     + E
Sbjct: 108 --DGSTVSVESSDYNSIKLGMVRAGV-NQATAAGDDILLQDMGFGVSQRLEQERLKLSRE 164

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV---YKSAEAIRH 193
            ++A+ I+ +  +  ARV + +P    F +     +ASV +  I+  V    +  ++I  
Sbjct: 165 RQLAQAIEEMKQVRKARVLLALPKHSVFVRHNQEASASVSL-TISTGVNLKQQEVDSIVD 223

Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKALAA 251
           +VA+AVP +    +TV D  G+LL++   +       K   + ++ +  +   I+  L  
Sbjct: 224 MVASAVPGMKTSRITVTDQHGRLLSSGSQDPASAARRKEQELERSQEQGLREKIDSVLLP 283

Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------TSQP 302
            LG  N+ + V  +++  T +     +DP++   RS    +D              ++QP
Sbjct: 284 ILGFGNYTAQVDIQMDFSTVEQTRKNFDPNTPSTRSEYALEDYNNGNMVAGIPGALSNQP 343

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
            +  ++ Q++  + D  +    + + + +KE   N+E++T           L R +++V 
Sbjct: 344 PADASIPQDVAQMKDGTL----TGQGSVRKESTRNFELDTTISHERKQTGTLARQTVSVA 399

Query: 363 VNKGRLTEVLGRSADQGKI------DSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           +   R+      + D G++      +S +  I +++  A G +  RGD + + S+ F E 
Sbjct: 400 IKDRRVV-----NPDTGEVTYTPLSESEINAIRQVLIGAVGFDESRGDLLNVLSVKFAEP 454

Query: 417 QL 418
           +L
Sbjct: 455 EL 456


>gi|84388111|ref|ZP_00991007.1| flagellar M-ring protein [Vibrio splendidus 12B01]
 gi|84377178|gb|EAP94048.1| flagellar M-ring protein [Vibrio splendidus 12B01]
          Length = 580

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 90/417 (21%), Positives = 184/417 (44%), Gaps = 40/417 (9%)

Query: 19  RTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76
           R  +L+L+  I V   +MLF    F+V  P    L    E  ++  +   L    I++ +
Sbjct: 54  RQVVLVLSISICVALIVMLF----FWVKEPEMRPLGA-YETEELIPVLDYLDLQKIEYTL 108

Query: 77  SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136
              G++ISVP+S     ++++   GL +   N+G ++  +   FG++  +++     + E
Sbjct: 109 E--GNTISVPASEYNSLKLNMVRAGL-NQERNAGDDILMQDMGFGVSQRVEQERLKLSRE 165

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHL 194
            ++A+ I+ +  +  A+V + +P    F +     +ASV +     +  K  E  ++  +
Sbjct: 166 RQLAKAIEQMKQVRKAQVLLALPKQSVFVRHNQEASASVFLTLKTGTNLKQQEVDSVVDM 225

Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN--------IN 246
           VA+AVP +    +TV D  G+LL +   +       +S  +  +HE+E N        I+
Sbjct: 226 VASAVPGMKTSRITVTDQHGRLLNSGSQD------PMSAARRKEHELERNQEQALREKID 279

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET------- 299
             L   LG  N+ + V  +L+    +     +DP++   RS    +D     T       
Sbjct: 280 SILIPILGFGNYTAQVDIQLDFSAVEQTRKRFDPNTPATRSEYTLEDYNNGNTVAGIPGA 339

Query: 300 --SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
             +QP +  ++ Q++  + D  +    + + +  KE   N+E++T        +  + R 
Sbjct: 340 LSNQPPADASIPQDVAQMKDGSM----TGQGSVHKEATRNFELDTTISHERKQSGTVNRQ 395

Query: 358 SIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           +++V + ++  L    G         S +  I +++    G +  RGD + + SM F
Sbjct: 396 TVSVAIKDRQSLNPDTGEVVHTPIPASEINAIRQVLIGTVGFDENRGDLLNVLSMQF 452


>gi|269961618|ref|ZP_06175980.1| flagellar M-ring protein [Vibrio harveyi 1DA3]
 gi|269833659|gb|EEZ87756.1| flagellar M-ring protein [Vibrio harveyi 1DA3]
          Length = 580

 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 88/421 (20%), Positives = 191/421 (45%), Gaps = 38/421 (9%)

Query: 19  RTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76
           R  +L+L+  I V   +MLF    F+V  P    L    E  ++  +   L +  I++++
Sbjct: 53  RQVVLVLSISICVALIVMLF----FWVKEPEMRPLGA-YETEELIPVLDYLDQQKINYKL 107

Query: 77  SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136
             +G++ISV SS     ++ +   G+ + ++ +G ++  +   FG++  +++     + E
Sbjct: 108 --DGNTISVESSDYNSIKLGMVRAGV-NQATAAGDDILLQDMGFGVSQRLEQERLKLSRE 164

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHL 194
            ++A+ I+ +  +  ARV + +P    F +     +ASV +     +  K  E  +I  +
Sbjct: 165 RQLAQAIEEMKQVRKARVLLALPKHSVFVRHNQEASASVFLTLSTGANLKQQEVDSIVDM 224

Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKALAAF 252
           VA+AVP +    +TV D  G+LL++   +       K   + ++ +  +   I+  L   
Sbjct: 225 VASAVPGMKTSRITVTDQHGRLLSSGSQDPASAARRKEQELERSQEQALREKIDSVLLPI 284

Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------TSQPE 303
           LG  N+ + V  +++  T +     +DP++   RS    +D              ++QP 
Sbjct: 285 LGFGNYTAQVDIQMDFSTVEQTRKNFDPNTPATRSEYALEDYNNGNMVAGIPGALSNQPP 344

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
           +  ++ Q++  + D  +    + + + +KE   N+E++T           L R +++V +
Sbjct: 345 ADASIPQDVAQMKDGSL----TGQGSVRKESTRNFELDTTISHERKQTGTLARQTVSVAI 400

Query: 364 NKGRLTEVLGRSADQGKI------DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
              R       + D G++      +S +  I +++    G +  RGD + + S+ F E +
Sbjct: 401 KDRRTV-----NPDTGEVTYTPLSESEINAIRQVLIGTVGFDQNRGDLLNVLSVKFAEPE 455

Query: 418 L 418
           L
Sbjct: 456 L 456


>gi|294140203|ref|YP_003556181.1| flagellar M-ring protein FliF [Shewanella violacea DSS12]
 gi|293326672|dbj|BAJ01403.1| flagellar M-ring protein FliF [Shewanella violacea DSS12]
          Length = 571

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 97/445 (21%), Positives = 199/445 (44%), Gaps = 31/445 (6%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  L  +++  ++ ++   L +  I+++I  N   I VP       ++ L+ +
Sbjct: 61  LWAQEPEYRPLG-QMDTQEMVKVLDVLDKNKINYQI--NVDVIKVPEDQYQAVKLLLSRE 117

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           G+ S+SS + Y    + + FG++  M++     + E  +AR I+ +  I  A+V + +P 
Sbjct: 118 GIDSASSQNDY--LSQDSGFGVSQRMEQARLKHSQELNLARAIEELRSISRAKVILAIPK 175

Query: 161 MGSFRKIGARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
              F +  A+P+A+V++      +  +  +A+  +VA+AV  L    VTV DS G+LL +
Sbjct: 176 ENVFSRNRAKPSATVVLNVRRGGLGQEEVDAVVDIVASAVQGLIPTRVTVTDSNGRLLNS 235

Query: 220 NEME--RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
              +       + L +VQ  + E    +   L   LG +NF S V  ++ MD   + +  
Sbjct: 236 GSQDAVSARARRELELVQQKEVEYRTKVQSILMPILGPENFTSQV--DVTMDFTAVEQTS 293

Query: 278 --YDPDSKVERS-IRLSKDAQRSETSQPESAVT----VEQNMPHVSDRKVPLPRSLENTD 330
             Y+PD    RS + +  ++     S    A++    +E ++P  +        +   + 
Sbjct: 294 KRYNPDLPALRSEMTVENNSDGGSASGIPGALSNQPPMESDIPQDALNAEETSSASRGSS 353

Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY------ 384
            +E   N+E++T +I+ T       R     V    +     G + + G+I+        
Sbjct: 354 HREATRNFELDT-TISHTRQQVGTVRRVSVSVAVDYK----SGAAGEDGQINRVPRTELE 408

Query: 385 LAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALV 444
           L+ I +++  A G +++RGD + + ++ F++  L  +   ++       R     +  ++
Sbjct: 409 LSNIRRLLEGAVGFSTQRGDVLEVVTVPFMDQLLEEAPAPELWEQPWFWRALKLGVGGMI 468

Query: 445 FLVGTLLVTFLGLHALRRLHNIDDA 469
            L    L+ F+    L+RL   D A
Sbjct: 469 ILA---LILFIVRPMLKRLIYPDSA 490


>gi|117919790|ref|YP_868982.1| flagellar MS-ring protein [Shewanella sp. ANA-3]
 gi|117612122|gb|ABK47576.1| flagellar M-ring protein FliF [Shewanella sp. ANA-3]
          Length = 561

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 99/426 (23%), Positives = 194/426 (45%), Gaps = 25/426 (5%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  L  K+E  ++ ++   L +  I ++I  +   + VP     + ++ L+  
Sbjct: 53  IWAQEPEYRPLG-KMETQEMVQVLDVLDKNKIKYQIEVD--VVKVPEDKYQEVKMMLSRA 109

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           G+ +S + S  +   + + FG++  M++     + E  +AR I+ +  +  A+V + +P 
Sbjct: 110 GV-NSPAASTQDFLTQDSGFGVSQRMEQARLKHSQEENLARAIEQLQSVSRAKVILALPK 168

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
              F +  ++P+A+V+I      + +   +AI  +VA+AV  L+   VTV DS G+LL +
Sbjct: 169 ENVFARNTSQPSATVVINTRRGGLGQGEVDAIVDIVASAVQGLEPSRVTVTDSNGRLLNS 228

Query: 220 NEMERNILGKS---LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
              +  I  ++   L +VQ  + E    I+  L+  LG DNF S V  +++MD   + + 
Sbjct: 229 GSQD-GISARARRELELVQQKEAEYRTKIDSILSPILGPDNFTSQV--DVSMDFTAVEQT 285

Query: 277 V--YDPDSKVERS-IRLSKDAQRSETSQPESAVT----VEQNMPHVSDRKVPLPRSLENT 329
              ++PD    RS + +  ++    T     A++    +E N+P   D            
Sbjct: 286 AKRFNPDLPSLRSEMTVENNSTGGSTGGIPGALSNQPPMESNIPQ--DATKATESVTAGN 343

Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVV---VNKGRLTEVLGRSADQGKIDSYLA 386
             +E   N+E++T +I+ T     + R     V      G   E  G+ A   + +  L 
Sbjct: 344 SHREATRNFELDT-TISHTRQQIGVVRRVSVSVAVDFKPGAAGEN-GQVARVARTEQELT 401

Query: 387 EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFL 446
            I +++  A G +++RGD + + ++ F++  + +    ++       R     I ALV L
Sbjct: 402 NIRRLLEGAVGFSAQRGDVLEVVTVPFMDQLVEDVPAPELWEQPWFWRAVKLGIGALVIL 461

Query: 447 VGTLLV 452
           V  L V
Sbjct: 462 VLILAV 467


>gi|169827120|ref|YP_001697278.1| flagellar MS-ring protein [Lysinibacillus sphaericus C3-41]
 gi|168991608|gb|ACA39148.1| Flagellar M-ring protein [Lysinibacillus sphaericus C3-41]
          Length = 531

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 132/282 (46%), Gaps = 17/282 (6%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
           QF+KS +   + +I+++ S++ V I L     FF +   Y  LY  L   ++ ++  AL 
Sbjct: 14  QFWKSRSK--KQKIVMIGSLVGV-IALAAIVTFFASKTTYVPLYKDLSTREIGQVKEALD 70

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
              + ++I+  G+SI VP   V    + LA++G P + +   Y  F   + FG+T     
Sbjct: 71  SQGVTYQIAPGGTSILVPEEQVDSLLVQLASEGYPQTGT-IDYS-FANSSGFGMTDNEFN 128

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINPSVYKS 187
           + +  A E EIA+  +++ G+  A+V I +P+ G F   +    TAS+++   +P  YK 
Sbjct: 129 LLKKAATETEIAKLFRNLEGVKDAKVMITVPEEGVFVTDVKEDATASIVLNT-DPG-YKF 186

Query: 188 AE----AIRHLVAAAVPNLDMGDVTVLDSTGKLL-----TANEMERNILGKSLSIVQAIQ 238
            E     + +LV+ ++PNL   ++ + +   +       T +          L + + ++
Sbjct: 187 TEQQITTMYNLVSKSIPNLKTENIVISNQFSEYFDLNAATTDGASTTTAEGQLQMKKLVE 246

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP 280
            +++  +   L   +G D    +V  +++   +   E +  P
Sbjct: 247 RDLQRQVQNMLGTLMGQDKVMVSVTTDIDFKKENREENLVTP 288


>gi|218708823|ref|YP_002416444.1| flagellar MS-ring protein [Vibrio splendidus LGP32]
 gi|218321842|emb|CAV17815.1| Flagellar M-ring protein [Vibrio splendidus LGP32]
          Length = 580

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 90/417 (21%), Positives = 184/417 (44%), Gaps = 40/417 (9%)

Query: 19  RTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76
           R  +L+L+  I V   +MLF    F+V  P    L    E  ++  +   L    I++ +
Sbjct: 54  RQVVLVLSISICVALIVMLF----FWVKEPEMRPLGA-YETEELIPVLDYLDTQKIEYSL 108

Query: 77  SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136
              G++ISVP+S     ++++   GL +   N+G ++  +   FG++  +++     + E
Sbjct: 109 E--GNTISVPASEYNSLKLNMVRAGL-NQERNTGDDILMQDMGFGVSQRLEKERLKLSRE 165

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHL 194
            ++A+ I+ +  +  A+V + +P    F +     +ASV +     +  K  E  ++  +
Sbjct: 166 RQLAKAIEQMKQVRKAQVLLALPKQSVFVRHNQEASASVFLTLKTGTNLKQQEVDSVVDM 225

Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN--------IN 246
           VA+AVP +    +TV D  G+LL++   +       +S  +  +HE+E N        I+
Sbjct: 226 VASAVPGMKTSRITVTDQHGRLLSSGSQD------PMSAARRKEHELERNQEQALREKID 279

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE-------- 298
             L   LG  N+ + V  +L+    +     +DP++   RS    +D             
Sbjct: 280 SILIPILGFGNYTAQVDIQLDFSAVEQTRKRFDPNTPATRSEYTLEDYNNGNVVAGIPGA 339

Query: 299 -TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
            ++QP +  ++ Q++  + D  +    S+     KE   N+E++T        +  + R 
Sbjct: 340 LSNQPPADASIPQDVAQMKDGTMMGQGSVH----KEATRNFELDTTISHERKQSGTVNRQ 395

Query: 358 SIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           +++V + ++  L    G         S +  I +++    G +  RGD + + SM F
Sbjct: 396 TVSVAIKDRQSLNPDTGEVVHTPIPASEINAIRQVLIGTVGFDENRGDLLNVLSMQF 452


>gi|86146136|ref|ZP_01064462.1| flagellar M-ring protein [Vibrio sp. MED222]
 gi|85836083|gb|EAQ54215.1| flagellar M-ring protein [Vibrio sp. MED222]
          Length = 580

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 90/417 (21%), Positives = 184/417 (44%), Gaps = 40/417 (9%)

Query: 19  RTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76
           R  +L+L+  I V   +MLF    F+V  P    L    E  ++  +   L    I++ +
Sbjct: 54  RQVVLVLSISICVALIVMLF----FWVKEPEMRPLGA-YETEELIPVLDYLDTQKIEYSL 108

Query: 77  SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136
              G++ISVP+S     ++++   GL +   N+G ++  +   FG++  +++     + E
Sbjct: 109 E--GNTISVPASEYNSLKLNMVRAGL-NQERNTGDDILMQDMGFGVSQRLEKERLKLSRE 165

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHL 194
            ++A+ I+ +  +  A+V + +P    F +     +ASV +     +  K  E  ++  +
Sbjct: 166 RQLAKAIEQMKQVRKAQVLLALPKQSVFVRHNQEASASVFLTLKTGTNLKQQEVDSVVDM 225

Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN--------IN 246
           VA+AVP +    +TV D  G+LL++   +       +S  +  +HE+E N        I+
Sbjct: 226 VASAVPGMKTSRITVTDQHGRLLSSGSQD------PMSAARRKEHELERNQEQALREKID 279

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE-------- 298
             L   LG  N+ + V  +L+    +     +DP++   RS    +D             
Sbjct: 280 SILIPILGFGNYTAQVDIQLDFSAVEQTRKRFDPNTPATRSEYTLEDYNNGNVVAGIPGA 339

Query: 299 -TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
            ++QP +  ++ Q++  + D  +    S+     KE   N+E++T        +  + R 
Sbjct: 340 LSNQPPADASIPQDVAQMKDGTMMGQGSVH----KEATRNFELDTTISHERKQSGTVNRQ 395

Query: 358 SIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           +++V + ++  L    G         S +  I +++    G +  RGD + + SM F
Sbjct: 396 TVSVAIKDRQSLNPDTGEVVHTPIPASEINAIRQVLIGTVGFDENRGDLLNVLSMQF 452


>gi|330828799|ref|YP_004391751.1| flagellar M-ring protein FliF [Aeromonas veronii B565]
 gi|328803935|gb|AEB49134.1| Flagellar M-ring protein FliF [Aeromonas veronii B565]
          Length = 569

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 91/417 (21%), Positives = 182/417 (43%), Gaps = 23/417 (5%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           F S T + R   LIL   I + I +F+    +   P    L        V  +   L + 
Sbjct: 31  FLSNTDVLRQITLILGLAICLAIAVFIL--LWGKEPDMRPLGTYTTQELVKTLDF-LDQQ 87

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNS--GYELFDKVNSFGLTSFMQE 128
            I + +  +G S+ V +      ++ L   GL +++ ++  G ++  K +SFG++  M+ 
Sbjct: 88  KIPYEV--DGKSVLVNAESYPTIQLALTRAGLANATDSNIGGEDILLKDSSFGVSQRMES 145

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS- 187
                + E ++A  I+    +  A+V + +P    F +   +P+A+V++     ++ +  
Sbjct: 146 ERLKLSRERQLASAIEQFQNVAKAQVLLAIPKDNVFARNERKPSATVVLNLKGAALGQGE 205

Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNI 245
            ++I  +VA+AV  L+   VTV D  G+LL +   +       K  ++ Q  + E +  I
Sbjct: 206 VDSIVDMVASAVHGLEPTRVTVTDQNGRLLNSGSQDPISAQTRKEFAMQQKQELEYKQKI 265

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS----- 300
           +  L   LG DN+ + V   L+   Q+     Y+PD    RS    ++   S ++     
Sbjct: 266 DAILIPVLGADNYTAEVDLSLDFSQQEQTRKTYNPDLPAVRSEMTMEENSASGSNGGVPG 325

Query: 301 ----QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
               QP +A     N+P  +        +     +KE   N+E++T    T      + R
Sbjct: 326 ALSNQPPAA----SNIPEEATGGDGASAAASGRSRKEATRNFELDTTVSHTRRQMGGIRR 381

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           ++++V V+   +    G    + +  + L  + +++S   G +  RGDT+ + ++ F
Sbjct: 382 MTVSVAVDYKAVPGADGAVTREARTQAELDTLRRLLSGGLGFDVTRGDTLEVVAIPF 438


>gi|156975431|ref|YP_001446338.1| flagellar MS-ring protein [Vibrio harveyi ATCC BAA-1116]
 gi|156527025|gb|ABU72111.1| hypothetical protein VIBHAR_03162 [Vibrio harveyi ATCC BAA-1116]
          Length = 580

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 88/421 (20%), Positives = 191/421 (45%), Gaps = 38/421 (9%)

Query: 19  RTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76
           R  +L+L+  I V   +MLF    F+V  P    L    E  ++  +   L +  I++++
Sbjct: 53  RQVVLVLSISICVALIVMLF----FWVKEPEMRPLGA-YETEELIPVLDYLDQQKINYKL 107

Query: 77  SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136
             +G++ISV SS     ++ +   G+ + ++ +G ++  +   FG++  +++     + E
Sbjct: 108 --DGNTISVESSDYNSIKLGMVRAGV-NQATAAGDDILLQDMGFGVSQRLEQERLKLSRE 164

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHL 194
            ++A+ I+ +  +  ARV + +P    F +     +ASV +     +  K  E  +I  +
Sbjct: 165 RQLAQAIEEMKQVRKARVLLALPKHSVFVRHNQEASASVFLTLSTGANLKQQEVDSIVDM 224

Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKALAAF 252
           VA+AVP +    +TV D  G+LL++   +       K   + ++ +  +   I+  L   
Sbjct: 225 VASAVPGMKTSRITVTDQHGRLLSSGSQDPASAARRKEQELERSQEQALREKIDSVLLPI 284

Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------TSQPE 303
           LG  N+ + V  +++  T +     +DP++   RS    +D              ++QP 
Sbjct: 285 LGFGNYTAQVDIQMDFSTVEQTRKNFDPNTPSTRSEYALEDYNNGNMVAGIPGALSNQPP 344

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
           +  ++ Q++  + D  +    + + + +KE   N+E++T           L R +++V +
Sbjct: 345 ADASIPQDVAQMKDGTL----TGQGSVRKESTRNFELDTTISHERKQTGTLARQTVSVAI 400

Query: 364 NKGRLTEVLGRSADQGKI------DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
              R       + D G++      +S +  I +++    G +  RGD + + S+ F E +
Sbjct: 401 KDRRTV-----NPDTGEVTYTPLSESEINAIRQVLIGTVGFDENRGDLLNVLSVKFAEPE 455

Query: 418 L 418
           L
Sbjct: 456 L 456


>gi|317129209|ref|YP_004095491.1| flagellar M-ring protein FliF [Bacillus cellulosilyticus DSM 2522]
 gi|315474157|gb|ADU30760.1| flagellar M-ring protein FliF [Bacillus cellulosilyticus DSM 2522]
          Length = 532

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 112/229 (48%), Gaps = 14/229 (6%)

Query: 36  FMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARI 95
           F+A  +F +  +Y  LY  L V +   I   L    +   +S +G+SI VP + V + ++
Sbjct: 38  FLAFMWFGSRTNYVPLYSNLTVQETGEIKNTLDARGVPSEVSSDGTSILVPEAQVNELKV 97

Query: 96  HLAAQGLPSSSSNSG---YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
            LAA+GLP    NSG   Y  F +   FG T     +    AL+  I   I++I G+  A
Sbjct: 98  SLAAEGLP----NSGRIDYSTFSENMGFGTTDNTFNLLERAALQTSIEDLIRNIDGVRNA 153

Query: 153 RVHIVMPDMGSFRKIGAR-PTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTV 209
           +V I +P+   +        TASV++   +       +  A+ HLV+ ++PNL + ++ +
Sbjct: 154 QVMITLPEESVWLSDDREAATASVLLNLDHGYSLDQNQVRALYHLVSRSIPNLPVENIVM 213

Query: 210 LDSTGKLLTANEMERNILGKSLSIVQ---AIQHEIEMNINKALAAFLGV 255
           +D   + L  ++ +   +  SL+I +    IQ +IE ++ + +   LG 
Sbjct: 214 MDQMSRYLELDD-QTTTVDSSLTIYEQQRQIQRDIERDLQRQVQQMLGT 261


>gi|237751136|ref|ZP_04581616.1| flagellar M-ring protein [Helicobacter bilis ATCC 43879]
 gi|229373581|gb|EEO23972.1| flagellar M-ring protein [Helicobacter bilis ATCC 43879]
          Length = 563

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 173/369 (46%), Gaps = 46/369 (12%)

Query: 67  LSEANIDFR-ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
           L + NI ++ I+DN  +I+VP   V   R  LAAQG+     +  Y++F++ NSFG T  
Sbjct: 74  LKQQNIPYKMINDN--TIAVPQDQVFVLRNELAAQGIIKGRVD--YDIFNE-NSFGATQS 128

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
             ++ ++RA++G++ +T+ +++ I  ARV I  P    F K  A P+ASV +   +    
Sbjct: 129 EFDVKKLRAIKGQLEKTLMALAPIQDARVEIAEPKDDVFVKTRAVPSASVALTLRDGMTL 188

Query: 186 KSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLSIVQAIQHE 240
              +   I++L+A +   L   +V ++D  G  L   +   +E     K+ +     + E
Sbjct: 189 TQNQIFGIQNLIANSFNGLKPENVIMVDQYGNPLNKRDEATIENEQAFKNFAYKVQAEQE 248

Query: 241 IEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS-- 297
           I   I ++L+    G D    +V  + +   Q+  E +Y  +S V  +    K+ +R   
Sbjct: 249 IANKIRQSLSRLAGGTDRMTVSVNLDYDFGKQESTEEIYSKESAV--ASESGKEIERKGL 306

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ-----SNYEINTKSIATTHDNY 352
               P     V  N+  V D        L++ +++E +      NY  + K+        
Sbjct: 307 APKDPGGVPGVINNIAEVKD--------LDSNNREEYRESQFVKNYMPDKKTTTMRLQTP 358

Query: 353 KLERLSIAVVVN----------KGRLT-EVLGRSADQGKIDSYLAEINKIVSAATGINSR 401
           +L+R+++ VV++           G +T +   RS ++      LAEI KIV A++G +  
Sbjct: 359 QLKRMTVGVVIDGTYTEETNEETGFITMKYTPRSPEE------LAEIKKIVEASSGYDES 412

Query: 402 RGDTITITS 410
           R D +++ +
Sbjct: 413 RNDIVSVIA 421


>gi|262404479|ref|ZP_06081034.1| flagellar M-ring protein FliF [Vibrio sp. RC586]
 gi|262349511|gb|EEY98649.1| flagellar M-ring protein FliF [Vibrio sp. RC586]
          Length = 580

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 101/437 (23%), Positives = 186/437 (42%), Gaps = 54/437 (12%)

Query: 8   LQFFKSGTSLGRTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           + F      L R  +L+L+  I V   +MLF    F+V  P    L    E  ++  +  
Sbjct: 43  MDFTVGDLDLLRQVVLVLSISICVALIVMLF----FWVREPDMRPLGA-YETEELIPVLD 97

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L +    +++  +G++I VP S     ++ +   GL +    +G E+  +   FG++  
Sbjct: 98  YLDQQKQQYKL--DGNTILVPVSDYNSLKLSMVRAGL-NQERQAGDEILMQDMGFGVSQR 154

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
           +++     + E ++A+ I+ +  I  ARV + +P    F +     +ASV +     +  
Sbjct: 155 LEQERLKLSRERQLAKAIEEMRQINKARVLLALPKQSVFVRQNQEASASVFLSLRTGANL 214

Query: 186 KSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEM 243
           K  E  A+  +VA+AVP +    VTV D  G+LL++   +       +S  +  + E+E 
Sbjct: 215 KQEEIDAVVDMVASAVPGMKPSRVTVTDQHGRLLSSGSQD------PVSAARRKEQELEK 268

Query: 244 N--------INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
                    I+  L   LG+ N+ + V  EL+    +    V+DP++   RS    +D  
Sbjct: 269 QQEDVLRDKIDSVLIPILGLGNYTAQVDIELDFSAVEQTRKVFDPNTPATRSEYTLEDYN 328

Query: 296 RSE---------TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346
                       ++QP +  ++ Q++  + D  V    S+     KE   N+E++T    
Sbjct: 329 NGNVVAGVPGALSNQPPADASIPQDVAQMKDGSVMGQGSVH----KEATRNFELDTTISH 384

Query: 347 TTHDNYKLERLSIAVVV--------NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
               +  + R ++AV V        + G +T      AD       L  I +I+    G 
Sbjct: 385 ERKQSGVVNRQTVAVAVKSRSNVNPDTGEITYTPLSEAD-------LNSIRQILIGTVGY 437

Query: 399 NSRRGDTITITSMDFLE 415
           +  RGD + + SM F E
Sbjct: 438 SENRGDLLNVLSMQFAE 454


>gi|126653749|ref|ZP_01725667.1| flagellar M-ring protein [Bacillus sp. B14905]
 gi|126589713|gb|EAZ83849.1| flagellar M-ring protein [Bacillus sp. B14905]
          Length = 531

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 134/284 (47%), Gaps = 21/284 (7%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
           QF+KS +   + +I+++ S++ V I L     FF +   Y  LY  L   ++ ++  AL 
Sbjct: 14  QFWKSRSK--KQKIVMVGSLVGV-IALAAIVTFFASKTTYVPLYKDLSTREIGQVKEALD 70

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
              + ++I+  G+SI VP   V    + LA++G P + +   Y  F   + FG+T     
Sbjct: 71  SQGVTYQIAPGGTSILVPEEQVDSLLVQLASEGYPQTGT-IDYS-FANSSGFGMTDNEFN 128

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINPSVYKS 187
           + +  A E EIA+  +++ G+  A+V I +P+ G F   +    TAS+++   +P  YK 
Sbjct: 129 LLKKAATETEIAKLFRNLEGVKDAKVMITVPEEGVFVTDVKEDATASIVLNT-DPG-YKF 186

Query: 188 AE----AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS-------LSIVQA 236
            E     + +LV+ ++PNL   ++ + +   +    N    +  G S       L + + 
Sbjct: 187 TEQQITTMYNLVSKSIPNLKTENIVISNQFSEYFDLNAATTD--GTSTATAEGQLQMKKL 244

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP 280
           ++ +++  +   L   +G D    +V  +++   +   E +  P
Sbjct: 245 VERDLQRQVQNMLGTLMGQDKVMVSVTTDIDFKKENREENLVTP 288


>gi|153834153|ref|ZP_01986820.1| flagellar M-ring protein FliF [Vibrio harveyi HY01]
 gi|148869523|gb|EDL68521.1| flagellar M-ring protein FliF [Vibrio harveyi HY01]
          Length = 580

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 88/421 (20%), Positives = 191/421 (45%), Gaps = 38/421 (9%)

Query: 19  RTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76
           R  +L+L+  I V   +MLF    F+V  P    L    E  ++  +   L +  I++++
Sbjct: 53  RQVVLVLSISICVALIVMLF----FWVKEPEMRPLGA-YETEELIPVLDYLDQQKINYKL 107

Query: 77  SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136
             +G++ISV SS     ++ +   G+ + ++ +G ++  +   FG++  +++     + E
Sbjct: 108 --DGNTISVESSDYNSIKLGMVRAGV-NQATAAGDDILLQDMGFGVSQRLEQERLKLSRE 164

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHL 194
            ++A+ I+ +  +  ARV + +P    F +     +ASV +     +  K  E  +I  +
Sbjct: 165 RQLAQAIEEMKQVRKARVLLALPKHSVFVRHNQEASASVFLTLSTGANLKQQEVDSIVDM 224

Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKALAAF 252
           VA+AVP +    +TV D  G+LL++   +       K   + ++ +  +   I+  L   
Sbjct: 225 VASAVPGMKTSRITVTDQHGRLLSSGSQDPASAARRKEQELERSQEQALREKIDSVLLPI 284

Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------TSQPE 303
           LG  N+ + V  +++  T +     +DP++   RS    +D              ++QP 
Sbjct: 285 LGFGNYTAQVDIQMDFSTVEQTRKNFDPNTPSTRSEYALEDYNNGNMVAGIPGALSNQPP 344

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
           +  ++ Q++  + D  +    + + + +KE   N+E++T           L R +++V +
Sbjct: 345 ADASIPQDVAQMKDGTL----TGQGSVRKESTRNFELDTTISHERKQTGTLARQTVSVAI 400

Query: 364 NKGRLTEVLGRSADQGKI------DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
              R       + D G++      +S +  I +++    G +  RGD + + S+ F E +
Sbjct: 401 KDRRTV-----NPDTGEVTYTPLSESEINAIRQVLIGTVGFDENRGDLLNVLSVKFAEPE 455

Query: 418 L 418
           L
Sbjct: 456 L 456


>gi|224174161|ref|XP_002339855.1| predicted protein [Populus trichocarpa]
 gi|222832385|gb|EEE70862.1| predicted protein [Populus trichocarpa]
          Length = 312

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 100/203 (49%), Gaps = 3/203 (1%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
           Q+F    SL  TR L L ++I V +   ++  F+   P    LY  L+       +  L 
Sbjct: 111 QWFDRLQSLQITRRLGLMAMIAVAVAAGLSVFFWSQKPGMVPLYTGLDQKATAEATDLLR 170

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
            A I F +      I+VP   +  AR+ LA  GL + S   G+EL ++   FG++ F++ 
Sbjct: 171 AAQIPFALDPATGGITVPEKNLHDARLKLAGSGL-TDSGKLGFELMERDPGFGVSQFVES 229

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYK 186
                ALE E++RTI ++  +  +RVH+ +P   +F +     +ASV   +R        
Sbjct: 230 ARYQHALETELSRTINTLRPVRDSRVHLAIPKPSAFTRQRDVASASVTLELRGGQQLERS 289

Query: 187 SAEAIRHLVAAAVPNLDMGDVTV 209
             +AI H+VAA++P+L    VTV
Sbjct: 290 QVDAIVHMVAASIPDLAPERVTV 312


>gi|77359741|ref|YP_339316.1| flagellar MS-ring protein [Pseudoalteromonas haloplanktis TAC125]
 gi|76874652|emb|CAI85873.1| flagellar biosynthesis; basal-body MS(membrane and
           supramembrane)-ring and collar protein
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 571

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 102/461 (22%), Positives = 203/461 (44%), Gaps = 49/461 (10%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
           SG  + R   LI+A  I + I +F+    +   P    L  K+   ++ +    L    I
Sbjct: 37  SGVDVLRQVTLIIALAICLAIAIFVI--IWARQPDMRPLG-KMPTEELIQTLDFLDAQKI 93

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
           D+++  +G+ +SV  S     ++ +  +GL      SG ++  +   FG++  ++     
Sbjct: 94  DYQL--DGNVVSVDESEYQNIKLLMTREGL-DQGPTSGSDIIMQDMGFGVSQRLERERLK 150

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKS 187
              E ++ARTI+ ++ I  A+V + +P    F +   +P+A+V++     R++N    + 
Sbjct: 151 HGREQQLARTIEELNNITRAKVLLAIPKENVFARREKKPSATVVLTLKRGRSLN---SEE 207

Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG----KSLSIVQAIQHEIEM 243
            +++  ++A+AV  L+   VTV D  G+LL  N   ++ L     K   + +  + E   
Sbjct: 208 VDSVVDMIASAVQGLEPARVTVTDQNGRLL--NSGSQSSLSARSRKEYDLERKREQEYLE 265

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIV--YDPDSKVERSIRLSKDAQRSETSQ 301
            I+  L   +G+ N+ + V  +L+MD   + E    Y+PD            A RSET+ 
Sbjct: 266 KIDSILIPIVGLSNYTAQV--DLSMDFSSLEETQKRYNPDLP----------AVRSETTF 313

Query: 302 PESAV---------------TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346
            E+ +                V  ++P V+ +      +  +   KE   NYE++T    
Sbjct: 314 EENNIGGLAVGIPGALSNQPPVNSDIPEVAGQGGAGSVTSPSRTHKEATRNYELDTTISH 373

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
               +  + R+S++V V+        G +    +    L+ I +++    G + +RGD +
Sbjct: 374 KRQQSGTIRRISVSVAVDYLPTVGENGETTMTPRSVEALSNIRRLLQGGVGFDIQRGDAL 433

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447
            + ++ F+   +  S  V +   D   +    V+ ALV +V
Sbjct: 434 EVVTVPFVREAVDMSFEVPLWEQDWFMKIVRLVLAALVIIV 474


>gi|262276395|ref|ZP_06054204.1| flagellar M-ring protein FliF [Grimontia hollisae CIP 101886]
 gi|262220203|gb|EEY71519.1| flagellar M-ring protein FliF [Grimontia hollisae CIP 101886]
          Length = 586

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 97/440 (22%), Positives = 199/440 (45%), Gaps = 48/440 (10%)

Query: 13  SGTSLGRTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            G  + R  IL+ A  I +   ++LFM    +V  P    L    E  ++  +   L + 
Sbjct: 46  GGMDIARQLILVAAVAICISLVVLLFM----WVQEPEMRPLGT-YETEELIPVLDHLDQQ 100

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
            ID+ +  +G++I VP+      +++L+  GL +S++  G ++  +   FG++   Q++ 
Sbjct: 101 KIDYTL--DGNTIRVPAKDYSSIKLNLSRAGL-NSATEEGDDILMQDMGFGVS---QQLE 154

Query: 131 RVR---ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVY 185
           R R   + E ++A  I+ I  +  ARV + MP    F +     +A+V   +R       
Sbjct: 155 RERLKLSRERQLAAAIEKIRAVSKARVLLAMPKQSVFVRHNQEASATVFLTVRGTTQLGQ 214

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEM 243
           +  ++I  +VA+AVP+L    VTV D  G+LL++   +   +   K   + +  +  +  
Sbjct: 215 EEVDSIVDMVASAVPSLKPSRVTVTDQHGRLLSSGSQDPIASQRRKEYELERKQEQALRE 274

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREI--VYDPDSKVERSIRLSKDAQRSE--- 298
            I+  L   LG+ N+ S V  ++ MD   + E    +DP +   RS    ++   ++   
Sbjct: 275 KIDAILIPVLGLGNYTSQV--DVTMDFSAVEETRKRFDPATPSTRSEYTRENYNNTDYVA 332

Query: 299 ------TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
                 ++QP    ++ +++  + +       SL     +E   NYE++T          
Sbjct: 333 GVPGALSNQPPVDSSIPEDIQDLRNGGAGDKGSL----SREATRNYELDTTISHRRGQTG 388

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKI------DSYLAEINKIVSAATGINSRRGDTI 406
            + R +++V V+      +   + + G+I      D+ L +I +++    G    RGD +
Sbjct: 389 TIARQTVSVAVDY-----IASTNPETGEITRTPVSDAELEKIRRLLVGGVGYTENRGDIL 443

Query: 407 TITSMDFLENQLFNSGTVQV 426
            + ++ F+E ++ + G V +
Sbjct: 444 EVLAVPFVEPEVVSLGDVPI 463


>gi|116327841|ref|YP_797561.1| flagellar MS-ring protein [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116330717|ref|YP_800435.1| flagellar MS-ring protein [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116120585|gb|ABJ78628.1| Endoflagellar biosynthesis/type III secretory pathway protein
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116124406|gb|ABJ75677.1| Endoflagellar biosynthesis/type III secretory pathway protein
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
          Length = 566

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 116/458 (25%), Positives = 202/458 (44%), Gaps = 71/458 (15%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASV---ILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           IL+ + +FF   T+L  T+ LIL  V   +LV I +        N      L+  L   D
Sbjct: 8   ILNNIREFF---TTLDTTKKLILGGVALTVLVAIGILSTISLQKNRVV---LFKDLTSKD 61

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              ++  L      +  SD  S I+V      +    LA + L  +    G+ELF+ V+ 
Sbjct: 62  FAEVTKKLDSLGYQYGSSDT-SVITVDPEQRQEIVTKLAQENLIPAGVQ-GWELFN-VDK 118

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           F  T F ++I + RAL+G I +++ ++  +  A V+I  P+   F    +   ASV++  
Sbjct: 119 FTETQFDKDIKKYRALKGAIEQSLMTLRSVDKAYVNIAFPEDELFSSNSSPVKASVILHY 178

Query: 180 INPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-------MERNILG 228
           I P V     K  + I +LV+ AVP L   +V+V D+ GK+++  E       +E  I+ 
Sbjct: 179 I-PGVESLSRKEVKGIVNLVSRAVPKLKPENVSVADADGKIISDFEEDLEKERLELRIVQ 237

Query: 229 KSLSI--VQAIQHEIEMNINKALAAFLGVDNFRSAVVAE--LNMDTQQIRE-----IVYD 279
           + L I   Q IQ  I+M     L   LG ++       E  LN D +  ++     +V  
Sbjct: 238 EKLRIGEEQRIQRLIDM--RNTLRWLLGGEDRVDITRFEYNLNWDKESYKDNSVSPVVAI 295

Query: 280 PDS--------------KVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRS 325
           PD+               ++ S + +K+  +     P+     E N+P            
Sbjct: 296 PDNPNTPYSELKLVDGYSLKVSSKETKEDFKGRGFTPDGPAGTEPNIPP----------G 345

Query: 326 LENTD-------KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN--KGRLTEVLGRSA 376
            ++TD       K E  +NYE N +        +K+E+++++VV++    +  +  G   
Sbjct: 346 YKDTDYQKSEYSKSENINNYEFNRRVSEVQKQPWKVEKVNLSVVIDGMWEKKEKEDGTGY 405

Query: 377 DQGKI---DSYLAEINKIVSAATGINSRRGDTITITSM 411
           D+  I   +  L +I K + +A GI+  RGD I++ ++
Sbjct: 406 DRKYIPVSEDELRQIRKNLESAVGIDKARGDQISVITI 443


>gi|297584035|ref|YP_003699815.1| flagellar M-ring protein FliF [Bacillus selenitireducens MLS10]
 gi|297142492|gb|ADH99249.1| flagellar M-ring protein FliF [Bacillus selenitireducens MLS10]
          Length = 528

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 130/256 (50%), Gaps = 19/256 (7%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNS-PHYDNLYVKLEVSDVNRISVAL 67
           +F++S +   + R L++ +V+L  I+ F+ A  +V S  +   LY  L + +   I   L
Sbjct: 14  EFWQSRSK--KQRGLLIGAVVL--IIAFIIALSWVGSRTNLVPLYSNLTIQETGEIKANL 69

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
               I   +S +G+SI VP + V   ++ LAA+G+P  +    Y  F     FG T    
Sbjct: 70  DGRGIQNEVSADGTSILVPETAVDNLKVELAAEGIP-QTGRIDYGTFGDNMGFGTTDSEF 128

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIR-----AIN 181
           ++    AL+  +   I+++ G+  A+V I +P+   + ++  +  TAS+++      +++
Sbjct: 129 QLLERAALQTTLEDLIRNVDGVTNAQVMITLPEESVWLQETPSEATASILLNMQAGYSLD 188

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ---AIQ 238
            S  +S   + HL + +VPNL + ++ ++D   + L   E +  +   SLS+ +   AIQ
Sbjct: 189 ESQIRS---LYHLASRSVPNLPVENIVIMDQFSRYLEL-EDQPGMADSSLSVYEQHRAIQ 244

Query: 239 HEIEMNINKALAAFLG 254
            +IE ++ + L   LG
Sbjct: 245 RDIERDLQRDLQQMLG 260


>gi|258511371|ref|YP_003184805.1| flagellar M-ring protein FliF [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257478097|gb|ACV58416.1| flagellar M-ring protein FliF [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 507

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/183 (33%), Positives = 95/183 (51%), Gaps = 18/183 (9%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSS 105
           PHY  +   L+   + ++   L    I   I   G+++ VP+    +ARI LA  GLP  
Sbjct: 48  PHYVTIMEGLDDKSLGQVQQELDTLKIPNEI--QGTAVLVPARYADEARIQLAMAGLP-- 103

Query: 106 SSNSGYELFDKVN-SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
              SGY+ +  V  S G T     +  + AL+  ++ TI  I+G+ +A+VHIVMP    F
Sbjct: 104 --QSGYDAYSGVTTSLGETQDEFNLQVLNALQQSLSTTISDINGVESAQVHIVMPQQQLF 161

Query: 165 RKIGARPT----ASVMIRAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
                +PT    ASV +  + P V  S+     I+ LVA +VP L +G+VTV+D  G +L
Sbjct: 162 V---TQPTTDAKASVFVD-LGPGVQLSSAQVYGIQQLVAHSVPGLTVGNVTVVDQYGNVL 217

Query: 218 TAN 220
           +++
Sbjct: 218 SSD 220


>gi|15642132|ref|NP_231764.1| flagellar MS-ring protein [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121727194|ref|ZP_01680361.1| flagellar M-ring protein FliF [Vibrio cholerae V52]
 gi|147674591|ref|YP_001217656.1| flagellar MS-ring protein [Vibrio cholerae O395]
 gi|153801651|ref|ZP_01956237.1| flagellar M-ring protein FliF [Vibrio cholerae MZO-3]
 gi|153818978|ref|ZP_01971645.1| flagellar M-ring protein FliF [Vibrio cholerae NCTC 8457]
 gi|153822880|ref|ZP_01975547.1| flagellar M-ring protein FliF [Vibrio cholerae B33]
 gi|227082258|ref|YP_002810809.1| flagellar M-ring protein FliF [Vibrio cholerae M66-2]
 gi|229507782|ref|ZP_04397287.1| flagellar M-ring protein FliF [Vibrio cholerae BX 330286]
 gi|229511981|ref|ZP_04401460.1| flagellar M-ring protein FliF [Vibrio cholerae B33]
 gi|229513784|ref|ZP_04403246.1| flagellar M-ring protein FliF [Vibrio cholerae TMA 21]
 gi|229519117|ref|ZP_04408560.1| flagellar M-ring protein FliF [Vibrio cholerae RC9]
 gi|229522086|ref|ZP_04411503.1| flagellar M-ring protein FliF [Vibrio cholerae TM 11079-80]
 gi|229607327|ref|YP_002877975.1| flagellar MS-ring protein [Vibrio cholerae MJ-1236]
 gi|254226365|ref|ZP_04919954.1| flagellar M-ring protein FliF [Vibrio cholerae V51]
 gi|254849219|ref|ZP_05238569.1| flagellar MS-ring protein [Vibrio cholerae MO10]
 gi|262153482|ref|ZP_06028612.1| flagellar M-ring protein FliF [Vibrio cholerae INDRE 91/1]
 gi|262167493|ref|ZP_06035199.1| flagellar M-ring protein FliF [Vibrio cholerae RC27]
 gi|298497845|ref|ZP_07007652.1| flagellar M-ring protein FliF [Vibrio cholerae MAK 757]
 gi|9656684|gb|AAF95278.1| flagellar M-ring protein FliF [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121630439|gb|EAX62832.1| flagellar M-ring protein FliF [Vibrio cholerae V52]
 gi|124122828|gb|EAY41571.1| flagellar M-ring protein FliF [Vibrio cholerae MZO-3]
 gi|125621115|gb|EAZ49460.1| flagellar M-ring protein FliF [Vibrio cholerae V51]
 gi|126510473|gb|EAZ73067.1| flagellar M-ring protein FliF [Vibrio cholerae NCTC 8457]
 gi|126519576|gb|EAZ76799.1| flagellar M-ring protein FliF [Vibrio cholerae B33]
 gi|146316474|gb|ABQ21013.1| flagellar M-ring protein FliF [Vibrio cholerae O395]
 gi|227010146|gb|ACP06358.1| flagellar M-ring protein FliF [Vibrio cholerae M66-2]
 gi|227014029|gb|ACP10239.1| flagellar M-ring protein FliF [Vibrio cholerae O395]
 gi|229341011|gb|EEO06016.1| flagellar M-ring protein FliF [Vibrio cholerae TM 11079-80]
 gi|229343806|gb|EEO08781.1| flagellar M-ring protein FliF [Vibrio cholerae RC9]
 gi|229348965|gb|EEO13922.1| flagellar M-ring protein FliF [Vibrio cholerae TMA 21]
 gi|229351946|gb|EEO16887.1| flagellar M-ring protein FliF [Vibrio cholerae B33]
 gi|229355287|gb|EEO20208.1| flagellar M-ring protein FliF [Vibrio cholerae BX 330286]
 gi|229369982|gb|ACQ60405.1| flagellar M-ring protein FliF [Vibrio cholerae MJ-1236]
 gi|254844924|gb|EET23338.1| flagellar MS-ring protein [Vibrio cholerae MO10]
 gi|262024065|gb|EEY42760.1| flagellar M-ring protein FliF [Vibrio cholerae RC27]
 gi|262030719|gb|EEY49353.1| flagellar M-ring protein FliF [Vibrio cholerae INDRE 91/1]
 gi|297542178|gb|EFH78228.1| flagellar M-ring protein FliF [Vibrio cholerae MAK 757]
          Length = 580

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 99/436 (22%), Positives = 192/436 (44%), Gaps = 46/436 (10%)

Query: 8   LQFFKSGTSLGRTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           + F      L R  +L+L+  I V   +MLF    F+V  P    L    E  ++  +  
Sbjct: 43  MDFTVGDLDLLRQVVLVLSISICVALIVMLF----FWVREPDMRPLGA-YETEELIPVLD 97

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L +    +++  +G++I VP S     ++ +   GL + +  +G E+  +   FG++  
Sbjct: 98  YLDQQKQQYKL--DGNTILVPVSDYNSLKLSMVRAGL-NQNRQAGDEILMQDMGFGVSQR 154

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
           +++     + E ++A+ I+ +  +  ARV + +P    F +     +ASV +     +  
Sbjct: 155 LEQERLKLSRERQLAKAIEEMRQVNKARVLLALPKQSVFVRHNQEASASVFLTVRTGANL 214

Query: 186 KSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME------RNILGKSLSIVQAI 237
           K  E  A+  +VA+AVP +    VTV D  G+LL++   +      R          +A+
Sbjct: 215 KQEEIDAVVDMVASAVPGMKPSRVTVTDQHGRLLSSGSQDPVSAARRKEQELEKQQEEAL 274

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           + +I+      L   LG+ N+ + V  EL+    +    V+DP++   RS    +D    
Sbjct: 275 RGKID----SVLIPILGLGNYTAQVDIELDFSAVEQTRKVFDPNTPATRSEYTLEDYNNG 330

Query: 298 E---------TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
                     ++QP +  ++ Q++  + D  V    S+     KE   NYE++T      
Sbjct: 331 NVVAGVPGALSNQPPADASIPQDVAQMKDGSVMGQGSVH----KEATRNYELDTTISHER 386

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI------DSYLAEINKIVSAATGINSRR 402
             +  + R ++AV V K R +     + D G++      ++ L  I +++    G +  R
Sbjct: 387 KQSGVINRQTVAVAV-KSRSS----VNPDTGEVTYTPLSEADLNSIRQVLIGTVGYSENR 441

Query: 403 GDTITITSMDFLENQL 418
           GD + + SM F E ++
Sbjct: 442 GDLLNVLSMPFAEPEM 457


>gi|254291370|ref|ZP_04962163.1| flagellar M-ring protein FliF [Vibrio cholerae AM-19226]
 gi|150422700|gb|EDN14654.1| flagellar M-ring protein FliF [Vibrio cholerae AM-19226]
          Length = 580

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 99/436 (22%), Positives = 192/436 (44%), Gaps = 46/436 (10%)

Query: 8   LQFFKSGTSLGRTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           + F      L R  +L+L+  I V   +MLF    F+V  P    L    E  ++  +  
Sbjct: 43  MDFTVGDLDLLRQVVLVLSISICVALIVMLF----FWVREPDMRPLGA-YETEELIPVLD 97

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L +    +++  +G++I VP S     ++ +   GL + +  +G E+  +   FG++  
Sbjct: 98  YLDQQKQQYKL--DGNTILVPVSDYNSLKLSMVRAGL-NQNRQAGDEILMQDMGFGVSQR 154

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
           +++     + E ++A+ I+ +  +  ARV + +P    F +     +ASV +     +  
Sbjct: 155 LEQERLKLSRERQLAKAIEEMRQVNKARVLLALPKQSVFVRHNQEASASVFLTVRTGANL 214

Query: 186 KSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME------RNILGKSLSIVQAI 237
           K  E  A+  +VA+AVP +    VTV D  G+LL++   +      R          +A+
Sbjct: 215 KQEEVDAVVDMVASAVPGMKPSRVTVTDQHGRLLSSGSQDPVSAARRKEQELEKQQEEAL 274

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           + +I+      L   LG+ N+ + V  EL+    +    V+DP++   RS    +D    
Sbjct: 275 RGKID----SVLIPILGLGNYTAQVDIELDFSAVEQTRKVFDPNTPATRSEYTLEDYNNG 330

Query: 298 E---------TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
                     ++QP +  ++ Q++  + D  V    S+     KE   NYE++T      
Sbjct: 331 NVVAGVPGALSNQPPADASIPQDVAQMKDGSVMGQGSVH----KEATRNYELDTTISHER 386

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI------DSYLAEINKIVSAATGINSRR 402
             +  + R ++AV V K R +     + D G++      ++ L  I +++    G +  R
Sbjct: 387 KQSGVINRQTVAVAV-KSRSS----VNPDTGEVTYTPLSEADLNSIRQVLIGTVGYSENR 441

Query: 403 GDTITITSMDFLENQL 418
           GD + + SM F E ++
Sbjct: 442 GDLLNVLSMPFAEPEM 457


>gi|121586818|ref|ZP_01676600.1| flagellar M-ring protein FliF [Vibrio cholerae 2740-80]
 gi|153213259|ref|ZP_01948671.1| flagellar M-ring protein FliF [Vibrio cholerae 1587]
 gi|153825593|ref|ZP_01978260.1| flagellar M-ring protein FliF [Vibrio cholerae MZO-2]
 gi|153828635|ref|ZP_01981302.1| flagellar M-ring protein FliF [Vibrio cholerae 623-39]
 gi|229528855|ref|ZP_04418245.1| flagellar M-ring protein FliF [Vibrio cholerae 12129(1)]
 gi|262191383|ref|ZP_06049573.1| flagellar M-ring protein FliF [Vibrio cholerae CT 5369-93]
 gi|297582031|ref|ZP_06943950.1| flagellar M-ring protein FliF [Vibrio cholerae RC385]
 gi|121548985|gb|EAX59024.1| flagellar M-ring protein FliF [Vibrio cholerae 2740-80]
 gi|124116059|gb|EAY34879.1| flagellar M-ring protein FliF [Vibrio cholerae 1587]
 gi|148875906|gb|EDL74041.1| flagellar M-ring protein FliF [Vibrio cholerae 623-39]
 gi|149740744|gb|EDM54843.1| flagellar M-ring protein FliF [Vibrio cholerae MZO-2]
 gi|229332629|gb|EEN98115.1| flagellar M-ring protein FliF [Vibrio cholerae 12129(1)]
 gi|262032758|gb|EEY51306.1| flagellar M-ring protein FliF [Vibrio cholerae CT 5369-93]
 gi|297533726|gb|EFH72568.1| flagellar M-ring protein FliF [Vibrio cholerae RC385]
 gi|327484662|gb|AEA79069.1| Flagellar M-ring protein FliF [Vibrio cholerae LMA3894-4]
          Length = 580

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 99/436 (22%), Positives = 192/436 (44%), Gaps = 46/436 (10%)

Query: 8   LQFFKSGTSLGRTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           + F      L R  +L+L+  I V   +MLF    F+V  P    L    E  ++  +  
Sbjct: 43  MDFTVGDLDLLRQVVLVLSISICVALIVMLF----FWVREPDMRPLGA-YETEELIPVLD 97

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L +    +++  +G++I VP S     ++ +   GL + +  +G E+  +   FG++  
Sbjct: 98  YLDQQKQQYKL--DGNTILVPVSDYNSLKLSMVRAGL-NQNRQAGDEILMQDMGFGVSQR 154

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
           +++     + E ++A+ I+ +  +  ARV + +P    F +     +ASV +     +  
Sbjct: 155 LEQERLKLSRERQLAKAIEEMRQVNKARVLLALPKQSVFVRHNQEASASVFLTVRTGANL 214

Query: 186 KSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME------RNILGKSLSIVQAI 237
           K  E  A+  +VA+AVP +    VTV D  G+LL++   +      R          +A+
Sbjct: 215 KQEEIDAVVDMVASAVPGMKPSRVTVTDQHGRLLSSGSQDPVSAARRKEQELEKQQEEAL 274

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           + +I+      L   LG+ N+ + V  EL+    +    V+DP++   RS    +D    
Sbjct: 275 RGKID----SVLIPILGLGNYTAQVDIELDFSAVEQTRKVFDPNTPATRSEYTLEDYNNG 330

Query: 298 E---------TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
                     ++QP +  ++ Q++  + D  V    S+     KE   NYE++T      
Sbjct: 331 NVVAGVPGALSNQPPADASIPQDVAQMKDGSVMGQGSVH----KEATRNYELDTTISHER 386

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI------DSYLAEINKIVSAATGINSRR 402
             +  + R ++AV V K R +     + D G++      ++ L  I +++    G +  R
Sbjct: 387 KQSGVINRQTVAVAV-KSRSS----VNPDTGEVTYTPLSEADLNSIRQVLIGTVGYSENR 441

Query: 403 GDTITITSMDFLENQL 418
           GD + + SM F E ++
Sbjct: 442 GDLLNVLSMPFAEPEM 457


>gi|218288294|ref|ZP_03492593.1| flagellar M-ring protein FliF [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218241653|gb|EED08826.1| flagellar M-ring protein FliF [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 507

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/183 (32%), Positives = 95/183 (51%), Gaps = 18/183 (9%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSS 105
           PHY  +   L+   + ++   L    I   I   G+++ VP+    +ARI LA  GLP  
Sbjct: 48  PHYVTIMEGLDDKSLGQVQQELDTLKIPNEI--QGTAVLVPARYADEARIQLAMAGLP-- 103

Query: 106 SSNSGYELFDKVN-SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
              SGY+ +  +  S G T     +  + AL+  ++ TI  I+G+ +A+VHIVMP    F
Sbjct: 104 --QSGYDAYSGITTSLGETQDEFNLQVLNALQQSLSSTISDINGVESAQVHIVMPQQQLF 161

Query: 165 RKIGARPT----ASVMIRAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
                +PT    ASV +  + P V  S+     I+ LVA +VP L +G+VTV+D  G +L
Sbjct: 162 V---TQPTTDAKASVFVD-LGPGVQLSSAQVYGIQQLVAHSVPGLTVGNVTVVDQYGNVL 217

Query: 218 TAN 220
           +++
Sbjct: 218 SSD 220


>gi|85706154|ref|ZP_01037249.1| flagellar M-ring protein FliF [Roseovarius sp. 217]
 gi|85669318|gb|EAQ24184.1| flagellar M-ring protein FliF [Roseovarius sp. 217]
          Length = 268

 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 130/267 (48%), Gaps = 15/267 (5%)

Query: 295 QRSETSQPESA-VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
           +R+ TS  +S+ VTV  N+P   D       + ENT+ +E + NYE+++     T     
Sbjct: 9   ERANTSNDQSSDVTVASNLPD-GDVAANGASASENTETRE-RINYEVSSTEREITQQPGA 66

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           ++R+S+A+++N     +  G  +   + +  L  +  +V AA GI+  RGD +TI ++ F
Sbjct: 67  IKRMSVAILINGLTTLDASGTPSFALRPEEELTALRDLVVAAVGIDEARGDVVTIRTLQF 126

Query: 414 LENQLFNSGT-VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR-LHNIDDAKK 471
               +  SGT V+ S +D L+    T++ +LV  +  L+   LGL  LR  L        
Sbjct: 127 --EPIEPSGTLVEASLLDRLAIDVMTLVQSLVLAIVALI---LGLFVLRPILSRPPLMAS 181

Query: 472 GEVGGKSILSPP---PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
            ++G  ++ S P   P+S  +  G +    ++ D S + +   SR   SRI+    +   
Sbjct: 182 SQIGRLAVASQPEIMPLSGVIDDGEIDESGLS-DVSEKALIDRSRQPLSRIDGP-PEDPV 239

Query: 529 LRLLHMIEINEERFAKILRKWARSEIE 555
           +RL  +I   +E   +ILR W   E E
Sbjct: 240 VRLRSLIGQRQEETVEILRNWLEGEEE 266


>gi|119469985|ref|ZP_01612790.1| flagellar M-ring protein [Alteromonadales bacterium TW-7]
 gi|119446695|gb|EAW27968.1| flagellar M-ring protein [Alteromonadales bacterium TW-7]
          Length = 571

 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 99/425 (23%), Positives = 188/425 (44%), Gaps = 43/425 (10%)

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L    I++++  +G+ + VP +     ++ +  +GL    + SG ++  +   FG++  +
Sbjct: 88  LDAQKIEYQV--DGNVVLVPETEYQNIKLLMTREGLEQGPT-SGSDIIMQDMGFGVSQRL 144

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
           +        E ++ARTI+ ++ I  ARV + +P    F +   +P+A+V++         
Sbjct: 145 ERERLKHGREQQLARTIEELNNITRARVLLAIPKENVFARREKKPSATVVLTLKRGRSLD 204

Query: 187 SAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG----KSLSIVQAIQHE 240
           S E  ++  +VA+AV  L+   VTV D  G+LL  N   +  L     K   I +  + E
Sbjct: 205 SEEVDSVVDMVASAVQGLEPARVTVTDQNGRLL--NSGSQTSLAARSRKEYDIERKREQE 262

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV--YDPDSKVERSIR--------- 289
               I+  L   +G+ N+ + V  +L+MD   + E    Y+PD    RS           
Sbjct: 263 YLEKIDSILIPVVGLANYTAQV--DLSMDFSAVEETQKRYNPDLPAVRSETTFEENNIGG 320

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
           L+     + T+QP     V  N+P V+ +      +  +   KE   NYE++T       
Sbjct: 321 LAVGIPGALTNQP----PVNSNIPEVAGQGGAGSATSPSRTHKEATRNYELDTTISHKRQ 376

Query: 350 DNYKLERLSIAVVVN------KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403
               + R+S++V V+      +   T +  RS ++      L+ I +++    G + +RG
Sbjct: 377 QTGVIRRISVSVAVDYIPKVGENGETTMTPRSVEE------LSNIRRLLQGGVGFDMQRG 430

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
           D + + ++ F+        +V +   D   +    V+ ALV +V   L+  +    L+RL
Sbjct: 431 DALEVVTVPFVREATDFDISVPLWEQDWFMKIIRLVLGALVIIV---LIMAVVKPMLKRL 487

Query: 464 HNIDD 468
              DD
Sbjct: 488 IYPDD 492


>gi|254436608|ref|ZP_05050102.1| flagellar M-ring protein FliF [Octadecabacter antarcticus 307]
 gi|198252054|gb|EDY76368.1| flagellar M-ring protein FliF [Octadecabacter antarcticus 307]
          Length = 602

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 94/177 (53%), Gaps = 4/177 (2%)

Query: 44  NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP 103
            +P    L+  L  ++   +  AL    +D +I      I+VP +    +R+ LAAQGLP
Sbjct: 37  QAPQRTTLFASLPEAEKAAVMDALRNNGMDVQIDSTTGDITVPVADYHSSRMSLAAQGLP 96

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
            S  + GY +   +   G +  ++ +   ++ E E+AR+I  I+ I A+RVH+ +P+  +
Sbjct: 97  QSMPD-GYSVLSDM-PMGTSRSVENMRLKQSQEIELARSINEINVISASRVHLAIPERSA 154

Query: 164 FRKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
           F +    PTASV   ++A      +   AI +LV+++V NL    VTV+D  G+LL+
Sbjct: 155 FARNAQNPTASVFLQVQAGRSLSEQQVMAIVNLVSSSVANLPRTSVTVVDQNGRLLS 211


>gi|157376198|ref|YP_001474798.1| flagellar MS-ring protein [Shewanella sediminis HAW-EB3]
 gi|157318572|gb|ABV37670.1| flagellar M-ring protein FliF [Shewanella sediminis HAW-EB3]
          Length = 569

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 92/430 (21%), Positives = 194/430 (45%), Gaps = 30/430 (6%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  L  K+   ++ ++   L +  I + I  +   + VP       ++ L  +
Sbjct: 57  LWAQEPEYRPLG-KMSTQEMIQVLDVLDKNKIKYEI--DVDVVKVPEDKYQDVKLMLTRE 113

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           G+ S++S+S Y    + + FG++  M++     + E  +AR I+ +  +  A+V + +P 
Sbjct: 114 GVDSAASSSDY--LSQDSGFGVSQRMEQARLKHSQELNLARAIEELRNVTRAKVILAIPK 171

Query: 161 MGSFRKIGARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
              F +  ++P+A+V+I A   S+  +  ++I  +VA+AV  L+   VTV DS G+LL +
Sbjct: 172 ENVFARNRSKPSATVVINARRGSLGQEEVDSIVDIVASAVQGLEPTRVTVTDSNGRLLNS 231

Query: 220 NEME--RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
              +       +   +VQ  + E    +   L   LG +NF S V  +++MD   + +  
Sbjct: 232 GSQDAVSARARREQELVQQKESEYRNKVESILMPILGPENFTSQV--DVSMDFTSVEQTA 289

Query: 278 --YDPDSKVERS-IRLSKDAQRSETSQPESAVT----VEQNMPH--VSDRKVPLPRSLEN 328
             Y+PD    RS + +  ++  + T     A++    +E N+P   ++++      S   
Sbjct: 290 KRYNPDLPALRSEMTVENNSNGATTGGIPGALSNQPPMEANIPQEALNNQADAESNSSSG 349

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI------D 382
           +  +E   N+E++T     +H   ++  +    V          G + + G++      +
Sbjct: 350 SSHREATRNFELDT---TISHTRQQIGVVRRVSVSVAVDFKS--GSAGEDGQVSRVPRTE 404

Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINA 442
             L+ I +++  A G  ++RGD I + ++ F++  + +    ++       R     +  
Sbjct: 405 QELSNIRRLLEGAVGFTTQRGDIIEVVTVPFMDQLIEDVPAPELWEQPWFWRAIKLALGG 464

Query: 443 LVFLVGTLLV 452
           +V LV  L V
Sbjct: 465 IVILVLILAV 474


>gi|260772323|ref|ZP_05881239.1| flagellar M-ring protein FliF [Vibrio metschnikovii CIP 69.14]
 gi|260611462|gb|EEX36665.1| flagellar M-ring protein FliF [Vibrio metschnikovii CIP 69.14]
          Length = 500

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/363 (22%), Positives = 163/363 (44%), Gaps = 21/363 (5%)

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L +   ++R+  +G++I VPS      R+++   GL   + ++G ++  +   FG++  +
Sbjct: 19  LDQQKQNYRL--DGNTILVPSKDFNSIRLNMVRSGL-HQTRHAGDDILLQDMGFGVSQRL 75

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
           ++     + E ++A+ I+ +  +  ARV + +P    F +     +ASV +        K
Sbjct: 76  EQERLKLSRERQLAKAIEEMRQVNRARVLLALPQQSVFVRHNQEASASVSLTLRTGMNLK 135

Query: 187 SAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIE 242
             E  +I  +VA+AVP +    VTV D  G+LL++   +       K   + +  +  + 
Sbjct: 136 QEEVDSIVDMVASAVPGMRPTRVTVTDQHGRLLSSGSQDPIATARRKEQELERRQEENLR 195

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---- 298
             I+  L   LG+ N+ + V  EL+    +    V+DP++   RS    +D         
Sbjct: 196 NKIDSVLIPILGLGNYTAQVDIELDFSAIEQTRKVFDPNTPATRSEYTLEDYNNGNVVAG 255

Query: 299 -----TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
                ++QP +  ++ Q++  + D  + L R    +  +E   N+E++T           
Sbjct: 256 IPGALSNQPPADASIPQDIAQMKDGSI-LGRG---SVHREATRNFELDTTISHERRQTGV 311

Query: 354 LERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
           + R ++AV + N+  +    G+   Q   +S +  I  ++    G N  RGD + + SM 
Sbjct: 312 INRQTVAVAIKNRAVVNPETGQVTYQALSESEINAIRTLLIGTVGFNENRGDLLKVLSMQ 371

Query: 413 FLE 415
           F E
Sbjct: 372 FAE 374


>gi|183220151|ref|YP_001838147.1| flagellar MS-ring protein [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189910271|ref|YP_001961826.1| flagellar MS-ring protein [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167774947|gb|ABZ93248.1| Endoflagellar biosynthesis/type III secretory pathway protein
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167778573|gb|ABZ96871.1| Flagellar M-ring FliF protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 566

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 156/347 (44%), Gaps = 56/347 (16%)

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           +G+ELFD +  F  T F ++I + RAL+G I +++ ++  I  A V+I +P+ G   +  
Sbjct: 109 TGWELFD-IEKFTETQFDKDIKKYRALKGAIEKSLNTLRPIEKADVNIAIPE-GDLFESN 166

Query: 169 ARPTASVMIRAINPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--- 221
           + P  + +I    P V     K  + I +LVA AVP L   +V+V D  GK+++  E   
Sbjct: 167 SYPVKASVILHFRPGVEGISKKEIKGIVNLVARAVPKLKPENVSVADPDGKIISDFEEDL 226

Query: 222 ----MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE--LNMDTQQIRE 275
               +E  I+ + L I +  + +  ++I   L  +LG ++       E   N D + + E
Sbjct: 227 EKERLELRIVQEKLRIEEEERVKRLIDIRNTLRWYLGGEDRVDITRFEYSFNWDQESLTE 286

Query: 276 -----IVYD---PDSKV-ERSI----------RLSKDAQRSETSQPESAVTVEQNMPHVS 316
                +V +   PD+   ER +          + +K++ +     P+     E N     
Sbjct: 287 NEVLPVVAEEDNPDTPYNERKLVDGYSLKVSSKETKESFKGRGFTPDGPAGTEPN----- 341

Query: 317 DRKVPLPRSLENTD-------KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN--KGR 367
                LP   ++TD       K E  +NYE N +        +K+E++ ++VVV+    R
Sbjct: 342 -----LPPGYKDTDYQKAEYSKDENINNYEFNKRVKDIKRQPWKIEKIGLSVVVDGVWER 396

Query: 368 LTEVLGRSADQGKI---DSYLAEINKIVSAATGINSRRGDTITITSM 411
                G   D+  I   +  L  I K + AA G    RGD I++ ++
Sbjct: 397 KEREDGLGYDRKYIPVAEPDLKLIRKNLEAAIGYTRSRGDQISVITI 443


>gi|254228436|ref|ZP_04921862.1| flagellar M-ring protein FliF [Vibrio sp. Ex25]
 gi|262393588|ref|YP_003285442.1| flagellar M-ring protein FliF [Vibrio sp. Ex25]
 gi|47080313|dbj|BAD18882.1| basal body protein [Vibrio alginolyticus]
 gi|151939024|gb|EDN57856.1| flagellar M-ring protein FliF [Vibrio sp. Ex25]
 gi|262337182|gb|ACY50977.1| flagellar M-ring protein FliF [Vibrio sp. Ex25]
          Length = 580

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 87/418 (20%), Positives = 187/418 (44%), Gaps = 38/418 (9%)

Query: 19  RTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76
           R  +L+L+  I V   +MLF    F+V  P    L    E  ++  +   L +  I++++
Sbjct: 53  RQVVLVLSISICVALIVMLF----FWVKEPEMRPLGA-YETEELIPVLDYLDQQKINYKL 107

Query: 77  SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136
             +G++ISV SS     ++ +   G+ + ++ +G ++  +   FG++  +++     + E
Sbjct: 108 --DGNTISVESSEYNSIKLGMVRSGV-NQATEAGDDILLQDMGFGVSQRLEQERLKLSRE 164

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHL 194
            ++A+ I+ +  +  ARV + +P    F +     +ASV +     +  K  E  +I  +
Sbjct: 165 RQLAQAIEEMKQVRKARVLLALPKHSVFVRHNQEASASVFLTLSTGTNLKQQEVDSIVDM 224

Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKALAAF 252
           VA+AVP +    +TV D  G+LL++   +       K   + ++ +  +   I+  L   
Sbjct: 225 VASAVPGMKTSRITVTDQHGRLLSSGSQDPASAARRKEQELERSQEQALREKIDSVLLPI 284

Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------TSQPE 303
           LG  N+ + V  +++    +     +DP++   RS    +D              ++QP 
Sbjct: 285 LGYGNYTAQVDIQMDFSAVEQTRKRFDPNTPATRSEYALEDYNNGNMVAGIPGALSNQPP 344

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
           +  ++ Q++  + D  V    S+    +KE   N+E++T           + R +++V +
Sbjct: 345 ADASIPQDVAQMKDGSVMGQGSV----RKESTRNFELDTTISHERKQTGTVARQTVSVAI 400

Query: 364 NKGRLTEVLGRSADQGKI------DSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
              R       + D G++      +S +  I +++    G +  RGD + + S+ F E
Sbjct: 401 KDRRQV-----NPDTGEVTYTPMSESEINAIRQVLIGTVGFDQGRGDLLNVLSVKFAE 453


>gi|258621104|ref|ZP_05716138.1| flagellar M-ring protein [Vibrio mimicus VM573]
 gi|258626177|ref|ZP_05721025.1| flagellar M-ring protein [Vibrio mimicus VM603]
 gi|262170880|ref|ZP_06038558.1| flagellar M-ring protein FliF [Vibrio mimicus MB-451]
 gi|258581532|gb|EEW06433.1| flagellar M-ring protein [Vibrio mimicus VM603]
 gi|258586492|gb|EEW11207.1| flagellar M-ring protein [Vibrio mimicus VM573]
 gi|261891956|gb|EEY37942.1| flagellar M-ring protein FliF [Vibrio mimicus MB-451]
          Length = 579

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 97/431 (22%), Positives = 187/431 (43%), Gaps = 36/431 (8%)

Query: 8   LQFFKSGTSLGRTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           + F      L R  +L+L+  I V   +MLF    F+V  P    L    E  ++  +  
Sbjct: 42  MDFTVGDLDLLRQVVLVLSISICVALIVMLF----FWVREPDMRPLGA-YETEELIPVLD 96

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L +    +++  +G++I VP S     ++ +   GL +    +G E+  +   FG++  
Sbjct: 97  YLDQQKQQYKL--DGNTILVPVSDYNSLKLSMVRAGL-NQERQAGDEILMQDMGFGVSQR 153

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
           +++     + E ++A+ I+ +  I  ARV + +P    F +     +ASV +     +  
Sbjct: 154 LEQERLKLSRERQLAKAIEEMRQINKARVLLALPKQSVFVRQNQEASASVFLSLRTGANL 213

Query: 186 KSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME------RNILGKSLSIVQAI 237
           K  E  A+  +VA+AVP +    VTV D  G+LL++   +      R          +A+
Sbjct: 214 KQEEIDAVVDMVASAVPGMKPSRVTVTDQHGRLLSSGSQDPVSAARRKEQELEKQQEEAL 273

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           + +I+      L   LG+ N+ + V  EL+    +    V+DP++   RS    +D    
Sbjct: 274 RGKID----SVLIPILGLGNYTAQVDIELDFSAVEQTRKVFDPNTPATRSEYTLEDYNNG 329

Query: 298 E---------TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
                     ++QP +  ++ Q++  + D  V    S+     KE   N+E++T      
Sbjct: 330 NVVAGVPGALSNQPPADASIPQDVAQMKDGSVMGQGSVH----KEATRNFELDTTISHER 385

Query: 349 HDNYKLERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
             +  + R ++AV V ++  +    G        ++ L  I +I+    G +  RGD + 
Sbjct: 386 KQSGVVNRQTVAVAVKSRSNVNSETGEVTYTPLSEADLNSIRQILIGTVGYSENRGDLLN 445

Query: 408 ITSMDFLENQL 418
           + SM F E ++
Sbjct: 446 VLSMPFAEPEV 456


>gi|261209869|ref|ZP_05924170.1| flagellar M-ring protein FliF [Vibrio sp. RC341]
 gi|260841055|gb|EEX67580.1| flagellar M-ring protein FliF [Vibrio sp. RC341]
          Length = 580

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 103/437 (23%), Positives = 193/437 (44%), Gaps = 48/437 (10%)

Query: 8   LQFFKSGTSLGRTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           + F      L R  +L+L+  I V   +MLF    F+V  P    L    E  ++  +  
Sbjct: 43  MDFTVGDLDLLRQVVLVLSISICVALIVMLF----FWVREPDMRPLGA-YETEELIPVLD 97

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L +    +++  +G++I VP S     ++ +   GL +    +G E+  +   FG++  
Sbjct: 98  YLDQQKQQYKL--DGNTILVPVSDYNSLKLSMVRAGL-NQERQAGDEILMQDMGFGVSQR 154

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
           +++     + E ++A+ I+ +  I  ARV + +P    F +     +ASV +     +  
Sbjct: 155 LEQERLKLSRERQLAKAIEEMRQINKARVLLALPKQSVFVRQNQEASASVFLSLRTGANL 214

Query: 186 KSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME------RNILGKSLSIVQAI 237
           K  E  A+  +VA+AVP +    VTV D  G+LL++   +      R          +A+
Sbjct: 215 KQEEIDAVVDMVASAVPGMKPSRVTVTDQHGRLLSSGSQDPVSAARRKEQELEKQQEEAL 274

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           + +I+      L   LG+ N+ + V  EL+    +    V+DP++   RS    +D    
Sbjct: 275 RGKID----SVLIPILGLGNYTAQVDIELDFSAVEQTRKVFDPNTPATRSEYTLEDYNNG 330

Query: 298 E---------TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
                     ++QP +  ++ Q++  + D  V    S+     KE   N+E++T      
Sbjct: 331 NVVAGVPGALSNQPPADASIPQDVAQMKDGSVLGQGSVH----KEATRNFELDTTISHER 386

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL----AEIN---KIVSAATGINSR 401
             +  + R ++AV V K R +     + D G++ +Y     AEIN   +I+    G +  
Sbjct: 387 KQSGVVNRQTVAVAV-KSRSS----VNPDTGEV-TYTPLSEAEINSIRQILIGTVGYSEN 440

Query: 402 RGDTITITSMDFLENQL 418
           RGD + + SM F E ++
Sbjct: 441 RGDLLNVLSMPFAEPEV 457


>gi|149184178|ref|ZP_01862496.1| flagellar M-ring protein FliF [Erythrobacter sp. SD-21]
 gi|148831498|gb|EDL49931.1| flagellar M-ring protein FliF [Erythrobacter sp. SD-21]
          Length = 517

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 101/403 (25%), Positives = 169/403 (41%), Gaps = 53/403 (13%)

Query: 34  MLFMAARFFVNSPHYDN-LYVKLEVSDVNRISV--ALSEANIDFRISDNGSSISVPSSMV 90
           M  +A  +   SP     LY  L   D  R SV   L +A I + I  +  +++V    V
Sbjct: 28  MGLLALTWAALSPAPQRVLYSSL--GDAERASVVTTLDKAGISYTIDSSTGALTVGEDDV 85

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL-EGEIARTIQSISGI 149
            +AR+ +A+ G   ++  +G +L   +   G +  + E  R+RA  E E+  TI  I G+
Sbjct: 86  YRARMLVASDG-SLAAPETGSDLIASL-PMGASRTL-EGDRLRAAQERELTMTIMEIVGV 142

Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDV 207
            A RVHI   +   F +    P+AS+M+R          +  AI +LVA +VP L +  V
Sbjct: 143 EAVRVHIAKAERSVFVREDVAPSASIMVRLARGRQLTDGQVVAITNLVAGSVPGLSIDAV 202

Query: 208 TVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELN 267
            V+D  GKLLT     R+     + +   ++ ++   +++ L    G   F + V  EL+
Sbjct: 203 KVVDQHGKLLT---QARDPHSGRIDLQAQMEAKLNSQVSQLLTPMFGAGAFTAQVQVELD 259

Query: 268 MDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLP-RSL 326
           M+        YD D  V          +R  T Q +S+      +P V     P    + 
Sbjct: 260 MNEVTSARESYDKDGTV----------RRETTQQSQSSDVTAGGIPGVLANTPPAEGEAR 309

Query: 327 ENTDKKEEQSN-------------YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373
           +      +Q N             YE+  + + +      ++ LS+AV +++        
Sbjct: 310 QGAPNDTQQGNTAGGIGESSATRVYELGREVLVSNLSPGSVKYLSVAVAIDQ-------- 361

Query: 374 RSADQGKIDSYLAEINKI---VSAATGINSRRGDTITITSMDF 413
                    +  A+INK+   V+AA G    RGD +T+    F
Sbjct: 362 ----AALAKASAADINKVKELVTAAVGAREDRGDKVTVVMRPF 400


>gi|269965705|ref|ZP_06179818.1| flagellar M-ring protein [Vibrio alginolyticus 40B]
 gi|269829773|gb|EEZ84009.1| flagellar M-ring protein [Vibrio alginolyticus 40B]
          Length = 580

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 86/418 (20%), Positives = 187/418 (44%), Gaps = 38/418 (9%)

Query: 19  RTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76
           R  +L+L+  I V   +MLF    F+V  P    L    E  ++  +   L +  I++++
Sbjct: 53  RQVVLVLSISICVALIVMLF----FWVKEPEMRPLGA-YETEELIPVLDYLDQQKINYKL 107

Query: 77  SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136
             +G+++SV SS     ++ +   G+ + ++ +G ++  +   FG++  +++     + E
Sbjct: 108 --DGNTVSVESSEYNSIKLGMVRSGV-NQATEAGDDILLQDMGFGVSQRLEQERLKLSRE 164

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHL 194
            ++A+ I+ +  +  ARV + +P    F +     +ASV +     +  K  E  +I  +
Sbjct: 165 RQLAQAIEEMKQVRKARVLLALPKHSVFVRHNQEASASVFLTLSTGTNLKQQEVDSIVDM 224

Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKALAAF 252
           VA+AVP +    +TV D  G+LL++   +       K   + ++ +  +   I+  L   
Sbjct: 225 VASAVPGMKTSRITVTDQHGRLLSSGSQDPASAARRKEQELERSQEQALREKIDSVLLPI 284

Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------TSQPE 303
           LG  N+ + V  +++    +     +DP++   RS    +D              ++QP 
Sbjct: 285 LGYGNYTAQVDIQMDFSAVEQTRKRFDPNTPATRSEYALEDYNNGNMVAGIPGALSNQPP 344

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
           +  ++ Q++  + D  V    S+    +KE   N+E++T           + R +++V +
Sbjct: 345 ADASIPQDVAQMKDGSVMGQGSV----RKESTRNFELDTTISHERKQTGTVARQTVSVAI 400

Query: 364 NKGRLTEVLGRSADQGKI------DSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
              R       + D G++      +S +  I +++    G +  RGD + + S+ F E
Sbjct: 401 KDRRQV-----NPDTGEVTYTPMSESEINAIRQVLIGTVGFDQGRGDLLNVLSVKFAE 453


>gi|91223544|ref|ZP_01258809.1| flagellar M-ring protein [Vibrio alginolyticus 12G01]
 gi|91191630|gb|EAS77894.1| flagellar M-ring protein [Vibrio alginolyticus 12G01]
          Length = 580

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 86/418 (20%), Positives = 187/418 (44%), Gaps = 38/418 (9%)

Query: 19  RTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76
           R  +L+L+  I V   +MLF    F+V  P    L    E  ++  +   L +  I++++
Sbjct: 53  RQVVLVLSISICVALIVMLF----FWVKEPEMRPLGA-YETEELIPVLDYLDQQKINYKL 107

Query: 77  SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136
             +G+++SV SS     ++ +   G+ + ++ +G ++  +   FG++  +++     + E
Sbjct: 108 --DGNTVSVESSEYNSIKLGMVRSGV-NQATEAGDDILLQDMGFGVSQRLEQERLKLSRE 164

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHL 194
            ++A+ I+ +  +  ARV + +P    F +     +ASV +     +  K  E  +I  +
Sbjct: 165 RQLAQAIEEMKQVRKARVLLALPKHSVFVRHNQEASASVFLTLSTGTNLKQQEVDSIVDM 224

Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKALAAF 252
           VA+AVP +    +TV D  G+LL++   +       K   + ++ +  +   I+  L   
Sbjct: 225 VASAVPGMKTSRITVTDQHGRLLSSGSQDPASAARRKEQELERSQEQALREKIDSVLLPI 284

Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------TSQPE 303
           LG  N+ + V  +++    +     +DP++   RS    +D              ++QP 
Sbjct: 285 LGYGNYTAQVDIQMDFSAVEQTRKRFDPNTPATRSEYALEDYNNGNMVAGIPGALSNQPP 344

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
           +  ++ Q++  + D  V    S+    +KE   N+E++T           + R +++V +
Sbjct: 345 ADASIPQDVAQMKDGSVMGQGSV----RKESTRNFELDTTISHERKQTGTVARQTVSVAI 400

Query: 364 NKGRLTEVLGRSADQGKI------DSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
              R       + D G++      +S +  I +++    G +  RGD + + S+ F E
Sbjct: 401 KDRRQV-----NPDTGEVTYTPMSESEINAIRQVLIGTVGFDQGRGDLLNVLSVKFAE 453


>gi|91792682|ref|YP_562333.1| flagellar MS-ring protein [Shewanella denitrificans OS217]
 gi|91714684|gb|ABE54610.1| flagellar M-ring protein FliF [Shewanella denitrificans OS217]
          Length = 566

 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 105/440 (23%), Positives = 196/440 (44%), Gaps = 34/440 (7%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  L  K++ +++ ++   L +  I + I  +   I VP       ++ L+  
Sbjct: 56  MWAQEPEYRPLG-KMDTAEMIQVLDVLDKNQIKYEIQLD--VIKVPEDQYQDIKLILSRA 112

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           G+ S+   + Y    K + FG++  M++     + E  +AR I+ +  +  A+V + +P 
Sbjct: 113 GIESNVDTNDY--LSKDSGFGVSQRMEQARLKHSQELNLARVIEELKSVSRAKVILALPK 170

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
              F +  ++P+A+V++     S+ +   +AI  +VA+AV  L+   VTV DS G+LL +
Sbjct: 171 ENVFARNQSQPSATVVVNVRRGSLGQEEIDAIVDIVASAVQGLEPERVTVTDSNGRLLNS 230

Query: 220 NEME--RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
              +       + L +VQ  + E    I   L   LG +NF S V  ++ MD   I +  
Sbjct: 231 GSQDGASARARRELELVQNQEAEYRKKIESILMPILGPENFTSEV--DVTMDFTAIEQTA 288

Query: 278 --YDPDSKVERS---IRLSKDAQR------SETSQPESAVTVEQNMPHVSDRKVPLPRSL 326
             + PD    RS   I  + + +R      + ++QP     +E ++P  +        S 
Sbjct: 289 KRFAPDLPALRSEMTIETNTNGERVGGIPGALSNQP----PMESDIPENAGEATESVASN 344

Query: 327 ENTDKKEEQSNYEINTKSIATTHDN---YKLERLSIAVVVNKGRLTEVLGRSADQGKIDS 383
            N   +E   N+E++T +I+ T       +   +S+A+    G   E  G+     + + 
Sbjct: 345 GNV-HREATRNFELDT-TISHTRQQIGVVRRVSVSVAIDFKAGAAGED-GQVTRVARTEQ 401

Query: 384 YLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINAL 443
            LA I +++  A G +++RGD + + ++ F++  L       +       R     I A+
Sbjct: 402 ELANIRRLLEGAVGFSAQRGDMLEVVTVPFMDQLLEELPAPDLWEQPWFWRAIKLGIGAI 461

Query: 444 VFLVGTLLVTFLGLHALRRL 463
           V LV  L V       LRRL
Sbjct: 462 VILVLILAVV---RPMLRRL 478


>gi|45657269|ref|YP_001355.1| flagellar MS-ring protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45600507|gb|AAS69992.1| FliF [Leptospira interrogans serovar Copenhageni str. Fiocruz
           L1-130]
          Length = 566

 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 111/449 (24%), Positives = 197/449 (43%), Gaps = 53/449 (11%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           IL+ + +FF   T+L  T+ LIL  V L  ++            +   L+  L   D   
Sbjct: 8   ILNNIREFF---TTLDTTKKLILGGVALTVLIAIGILSTISLQKNRMVLFKDLTSKDFAE 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           ++  L      +  SD  S I+V      +    LA + L  +    G+ELF+ V+ F  
Sbjct: 65  VTKKLDSLGYQYGSSDT-SVITVDPEQRQEIVTKLAQENLIPAGVQ-GWELFN-VDKFTE 121

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T F ++I + RAL+G I +++ ++  +  A V+I  P+   F    +   ASV++  I P
Sbjct: 122 TQFDKDIKKYRALKGAIEQSLMTLRSVDKAYVNIAFPEDELFSSNSSPVKASVILHYI-P 180

Query: 183 SV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-------MERNILGKSL 231
            V     K  + I +LV+ AVP L   +V+V D+ GK+++  E       +E  I+ + L
Sbjct: 181 GVESLSRKEVKGIVNLVSRAVPKLKPENVSVADADGKIISDFEEDLEKERLELRIVQEKL 240

Query: 232 SI--VQAIQHEIEMNINKALAAFLGVDNFRSAVVAE--LNMDTQQIRE-----IVYDPDS 282
            I   Q IQ  I+M     L   LG ++       E  LN D +  ++     +V  PD+
Sbjct: 241 RIGEEQRIQRLIDMR--NTLRWLLGGEDRVDITRFEYNLNWDKESYKDNSVSPVVAIPDN 298

Query: 283 --------------KVERSIRLSKDAQRSETSQPESAVTVEQNM-PHVSDRKVPLPRSLE 327
                          ++ S + +K+  +     P+     E N+ P   D          
Sbjct: 299 PNTPYSELKLVDGYSLKVSSKETKEDFKGRGFTPDGPAGTEPNIAPGYKDTDY----QKA 354

Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN--KGRLTEVLGRSADQGKI---D 382
              K E  +NYE N +        +K+E+++++VV++    +  +  G   D+  +   +
Sbjct: 355 EYSKAENINNYEFNRRVSEVQKQPWKVEKVNLSVVIDGVWEKKEKEDGTGYDRKYVPVSE 414

Query: 383 SYLAEINKIVSAATGINSRRGDTITITSM 411
             L +I K + +A GI+  RGD I++ ++
Sbjct: 415 DELRQIRKNLESAVGIDKARGDQISVITI 443


>gi|24215291|ref|NP_712772.1| flagellar MS-ring protein [Leptospira interrogans serovar Lai str.
           56601]
 gi|24196388|gb|AAN49790.1|AE011426_5 flagellar MS-ring protein [Leptospira interrogans serovar Lai str.
           56601]
          Length = 565

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 111/449 (24%), Positives = 197/449 (43%), Gaps = 53/449 (11%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           IL+ + +FF   T+L  T+ LIL  V L  ++            +   L+  L   D   
Sbjct: 8   ILNNIREFF---TTLDTTKKLILGGVALTVLIAIGILSTISLQKNRMVLFKDLTSKDFAE 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           ++  L      +  SD  S I+V      +    LA + L  +    G+ELF+ V+ F  
Sbjct: 65  VTKKLDSLGYQYGSSDT-SVITVDPEQRQEIVTKLAQENLIPAGVQ-GWELFN-VDKFTE 121

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T F ++I + RAL+G I +++ ++  +  A V+I  P+   F    +   ASV++  I P
Sbjct: 122 TQFDKDIKKYRALKGAIEQSLMTLRSVDKAYVNIAFPEDELFSSNSSPVKASVILHYI-P 180

Query: 183 SV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-------MERNILGKSL 231
            V     K  + I +LV+ AVP L   +V+V D+ GK+++  E       +E  I+ + L
Sbjct: 181 GVESLSRKEVKGIVNLVSRAVPKLKPENVSVADADGKIISDFEEDLEKERLELRIVQEKL 240

Query: 232 SI--VQAIQHEIEMNINKALAAFLGVDNFRSAVVAE--LNMDTQQIRE-----IVYDPDS 282
            I   Q IQ  I+M     L   LG ++       E  LN D +  ++     +V  PD+
Sbjct: 241 RIGEEQRIQRLIDMR--NTLRWLLGGEDRVDITRFEYNLNWDKESYKDNSVSPVVAIPDN 298

Query: 283 --------------KVERSIRLSKDAQRSETSQPESAVTVEQNM-PHVSDRKVPLPRSLE 327
                          ++ S + +K+  +     P+     E N+ P   D          
Sbjct: 299 PNTPYSELKLVDGYSLKVSSKETKEDFKGRGFTPDGPAGTEPNIAPGYKDTDY----QKA 354

Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN--KGRLTEVLGRSADQGKI---D 382
              K E  +NYE N +        +K+E+++++VV++    +  +  G   D+  +   +
Sbjct: 355 EYSKAENINNYEFNRRVSEVQKQPWKVEKVNLSVVIDGVWEKKEKEDGTGYDRKYVPVSE 414

Query: 383 SYLAEINKIVSAATGINSRRGDTITITSM 411
             L +I K + +A GI+  RGD I++ ++
Sbjct: 415 DELRQIRKNLESAVGIDKARGDQISVITI 443


>gi|291558199|emb|CBL35316.1| flagellar basal-body M-ring protein/flagellar hook-basal body
           protein (fliF) [Eubacterium siraeum V10Sc8a]
          Length = 541

 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 123/249 (49%), Gaps = 19/249 (7%)

Query: 43  VNSPHYDNLYVKLEVSDVNRISVALSEANI-DFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +N   Y  +Y  L+  + +++  A++E  I D ++  +GS ISVPS      R+ L+ QG
Sbjct: 45  LNQKGYTAIYTGLDSEESSQVVSAINELGITDVKMGTDGS-ISVPSDQADNVRMQLSIQG 103

Query: 102 LPSSSSNSGYELFDKVNS-FGL--TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
            P S+ N     FD  NS  G+  T   +++ +++ L+  + + I +IS +  + V I M
Sbjct: 104 YPKSTFN-----FDVWNSGIGIWSTDTEKKVLQIQQLQTHLMKAINTISAVKNSYVIITM 158

Query: 159 PDMGSF--RKIGARPTASVMIRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTG 214
           P+  ++        P  SV +   N +   S   E I  LV  ++P L+  ++++LDS G
Sbjct: 159 PENSNYVISTDSEEPRVSVKLDLKNDAQLTSDQVEGIYALVLNSLPGLERENISILDSDG 218

Query: 215 KLLTANE--MERNILGKS-LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ 271
           KLL+     +E ++L +S L+  + +Q  ++  +N  L       ++   V  +LN D  
Sbjct: 219 KLLSGENTTVEEDVLYQSRLNFQEQMQSLLKSQLNDTLKKLY--KDYTINVNVKLNYDNS 276

Query: 272 QIREIVYDP 280
           +    +Y P
Sbjct: 277 KSEYTIYTP 285


>gi|167750730|ref|ZP_02422857.1| hypothetical protein EUBSIR_01708 [Eubacterium siraeum DSM 15702]
 gi|167656409|gb|EDS00539.1| hypothetical protein EUBSIR_01708 [Eubacterium siraeum DSM 15702]
          Length = 542

 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 123/249 (49%), Gaps = 19/249 (7%)

Query: 43  VNSPHYDNLYVKLEVSDVNRISVALSEANI-DFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +N   Y  +Y  L+  + +++  A++E  I D ++  +GS ISVPS      R+ L+ QG
Sbjct: 45  LNQKGYTAIYTGLDSEESSQVVSAINELGITDVKMGTDGS-ISVPSDQADNVRMQLSIQG 103

Query: 102 LPSSSSNSGYELFDKVNS-FGL--TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
            P S+ N     FD  NS  G+  T   +++ +++ L+  + + I +IS +  + V I M
Sbjct: 104 YPKSTFN-----FDVWNSGIGIWSTDTEKKVLQIQQLQTHLMKAINTISAVKNSYVIITM 158

Query: 159 PDMGSF--RKIGARPTASVMIRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTG 214
           P+  ++        P  SV +   N +   S   E I  LV  ++P L+  ++++LDS G
Sbjct: 159 PENSNYVISTDSEEPRVSVKLDLKNGAQLTSDQVEGIYALVLNSLPGLERENISILDSDG 218

Query: 215 KLLTANE--MERNILGKS-LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ 271
           KLL+     +E ++L +S L+  + +Q  ++  +N  L       ++   V  +LN D  
Sbjct: 219 KLLSGENTTVEEDVLYQSRLNFQEQMQSLLKSQLNDTLKKLY--KDYTINVNVKLNYDNS 276

Query: 272 QIREIVYDP 280
           +    +Y P
Sbjct: 277 KSEYTIYTP 285


>gi|116514986|ref|YP_802615.1| hypothetical protein BCc_043 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116256840|gb|ABJ90522.1| flagellar basal-body MS-ring and collar protein [Buchnera
           aphidicola str. Cc (Cinara cedri)]
          Length = 489

 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 92/381 (24%), Positives = 158/381 (41%), Gaps = 62/381 (16%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
           HY  LY  L   D   I   L   +I +R +++  ++ VP   +    + L         
Sbjct: 51  HYVVLYNNLSQEDSKWIISRLKILHIPYRCNNSFKTLLVPEDKINILNLSLLKNNN-ILK 109

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            N G+EL DK   FG++ F + I   R LEGE+++T++ I  I  ARVH+V      F +
Sbjct: 110 KNFGFELLDK-EKFGISQFHEHINYHRGLEGELSKTLEQIFPIQCARVHLVCKKDTDFFE 168

Query: 167 IGARPTASVMIRAINPSV---YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME 223
               P+ASV+I    P++   Y+   AI  L++ +VP+L   ++ ++D  G +L   ++ 
Sbjct: 169 NNQIPSASVIITLF-PNMHLTYEQINAIILLISGSVPDLSSDNIVLVDQFGNILNKYDLN 227

Query: 224 RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP--D 281
                                       F     ++   + E    +Q+I++I+  P  D
Sbjct: 228 H-------------------------TKFFNNSQYKKITILE-EYYSQRIKDILL-PILD 260

Query: 282 SK---VERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNY 338
           SK   V+ + +L KD   S  S     V  + +   +S                    N+
Sbjct: 261 SKDFVVQVTTKLKKDNHASTFSDKNYNVNQKIDNSFIS-------------------PNF 301

Query: 339 -EINTKSIA-TTHDNYKLERLSIAVVVNKGRLTEV--LGRSADQGKIDSYLAEINKIVSA 394
            E+N K+I  T   NYK       V ++K  L  +  L +S      +  L  I  +V +
Sbjct: 302 KELNIKNIKITVLINYKKNNSGKMVPLSKNELNNIENLVKSVINLSKNK-LNNIENLVKS 360

Query: 395 ATGINSRRGDTITITSMDFLE 415
              ++  +GD I + +  FL+
Sbjct: 361 VINLSKNKGDRINLINYMFLD 381


>gi|59712459|ref|YP_205235.1| flagellar MS-ring protein [Vibrio fischeri ES114]
 gi|59480560|gb|AAW86347.1| flagellar M ring protein FliF [Vibrio fischeri ES114]
          Length = 577

 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 93/418 (22%), Positives = 184/418 (44%), Gaps = 42/418 (10%)

Query: 19  RTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76
           R  IL+L+  I V   +MLF    F+V  P    L V  E  ++ ++   L     ++++
Sbjct: 54  RQVILVLSVSICVALIVMLF----FWVQEPEMRPLGV-YETDELIQVLDHLDAQKAEYKL 108

Query: 77  SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136
             +G++I VP+S   K  + L+  GL + +   G ++  +   FG++  +++     + E
Sbjct: 109 --DGNTILVPASEFSKMNLDLSRAGL-NKAVGEGDDILLQDMGFGVSQRLEQERLKLSRE 165

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHL 194
            ++A T + +  I  A+V + MP    F +     +A+V +     ++ K  E  +I  +
Sbjct: 166 RQLASTFEQMRPIRKAQVLLAMPKQSVFVRHNQEASATVFLTMRMGAMLKQEEVDSIVDM 225

Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKALAAF 252
           VA+AVP +    VTV D  G+LL++   +   +   K   + +  +  +   I+  L   
Sbjct: 226 VASAVPGMKPTRVTVTDQHGRLLSSGTQDPMAMAHRKEQELERKQEQSLRDKIDAILIPI 285

Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------TSQPE 303
           LG+ N+ + V   ++    +     +DP +   RS    +D              ++QP 
Sbjct: 286 LGLGNYTAQVDVSMDFSAVEQTRKQFDPQTPSTRSEYTLEDYNNGNVIAGVPGALSNQPP 345

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
               + Q++  + D  V    S+     KE   N+E++T           + R +++V V
Sbjct: 346 VDSAIPQDIAELKDGSVLGQGSVH----KEATRNFELDTTISHERKQTGTVARQTVSVAV 401

Query: 364 NK--------GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
            +        G +T     +A+       L +I +I+  + G+N +RGD + + S+ F
Sbjct: 402 KERQSVNPETGEVTYTPISAAE-------LDKIRQIIIGSVGLNEQRGDLLNVLSVKF 452


>gi|197334317|ref|YP_002156678.1| flagellar M-ring protein FliF [Vibrio fischeri MJ11]
 gi|197315807|gb|ACH65254.1| flagellar M-ring protein FliF [Vibrio fischeri MJ11]
          Length = 577

 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 92/418 (22%), Positives = 184/418 (44%), Gaps = 42/418 (10%)

Query: 19  RTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76
           R  IL+L+  I V   +MLF    F+V  P    L V  E  ++ ++   L     ++++
Sbjct: 54  RQVILVLSVSICVALIVMLF----FWVQEPEMRPLGV-YETDELIQVLDHLDAQKAEYKL 108

Query: 77  SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136
             +G++I VP+S   K  + L+  GL + +   G ++  +   FG++  +++     + E
Sbjct: 109 --DGNTILVPASEFSKMNLDLSRAGL-NKAVGEGDDILLQDMGFGVSQRLEQERLKLSRE 165

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHL 194
            ++A T + +  I  A+V + MP    F +     +A+V +     ++ K  E  +I  +
Sbjct: 166 RQLASTFEQMRPIRKAQVLLAMPKQSVFVRHNQEASATVFLTMRMGAMLKQEEVDSIVDM 225

Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKALAAF 252
           VA+AVP +    VTV D  G+LL++   +   +   K   + +  +  +   I+  L   
Sbjct: 226 VASAVPGMKPTRVTVTDQHGRLLSSGTQDPMAMAHRKEQELERKQEQSLRDKIDAILIPI 285

Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------TSQPE 303
           LG+ N+ + V   ++    +     +DP +   RS    +D              ++QP 
Sbjct: 286 LGLGNYTAQVDVSMDFSAVEQTRKQFDPQTPSTRSEYTLEDYNNGNVIAGVPGALSNQPP 345

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
               + Q++  + D  V    S+     KE   N+E++T           + R +++V +
Sbjct: 346 VDSAIPQDIAELKDGSVLGQGSVH----KEATRNFELDTTISHERKQTGTVARQTVSVAI 401

Query: 364 NK--------GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
            +        G +T     +A+       L +I +I+  + G+N +RGD + + S+ F
Sbjct: 402 KERQSVNPETGEVTYTPISAAE-------LDKIRQIIIGSVGLNEQRGDLLNVLSVKF 452


>gi|291532064|emb|CBK97649.1| flagellar basal-body M-ring protein/flagellar hook-basal body
           protein (fliF) [Eubacterium siraeum 70/3]
          Length = 542

 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 123/249 (49%), Gaps = 19/249 (7%)

Query: 43  VNSPHYDNLYVKLEVSDVNRISVALSEANI-DFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +N   Y  +Y  L+  + +++  A++E  I D ++  +GS ISVPS      R+ L+ QG
Sbjct: 45  LNQKGYTAIYTGLDSEESSQVVSAINELGITDVKMGTDGS-ISVPSDQADNVRMQLSIQG 103

Query: 102 LPSSSSNSGYELFDKVNS-FGL--TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
            P S+ N     FD  NS  G+  T   +++ +++ L+  + + I +IS +  + V I M
Sbjct: 104 YPKSTFN-----FDVWNSGIGIWSTDTEKKVLQIQQLQTHLMKAINTISAVKNSYVIITM 158

Query: 159 PDMGSF--RKIGARPTASVMIRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTG 214
           P+  ++        P  SV +   N +   S   E I  LV  ++P L+  ++++LDS G
Sbjct: 159 PENSNYVISTDSEEPRVSVKLDLKNGAQLTSDQVEGIYALVLNSLPGLERENISILDSDG 218

Query: 215 KLLTANE--MERNILGKS-LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ 271
           KLL+     +E ++L +S L+  + +Q  ++  +N  L       ++   V  +LN D  
Sbjct: 219 KLLSGENTTVEEDVLYQSRLNFQEQMQSLLKSQLNDTLKKLY--KDYTINVNVKLNYDNS 276

Query: 272 QIREIVYDP 280
           +    +Y P
Sbjct: 277 KSEYPIYTP 285


>gi|28899023|ref|NP_798628.1| flagellar MS-ring protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|153836977|ref|ZP_01989644.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AQ3810]
 gi|260365231|ref|ZP_05777788.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus K5030]
 gi|260878781|ref|ZP_05891136.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AN-5034]
 gi|260897376|ref|ZP_05905872.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus Peru-466]
 gi|260899935|ref|ZP_05908330.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AQ4037]
 gi|4322017|gb|AAD15920.1| polar flagellar M-ring protein FliF [Vibrio parahaemolyticus]
 gi|28807242|dbj|BAC60512.1| polar flagellar M-ring protein FliF [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149749750|gb|EDM60495.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AQ3810]
 gi|308088295|gb|EFO37990.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus Peru-466]
 gi|308094213|gb|EFO43908.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AN-5034]
 gi|308107383|gb|EFO44923.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AQ4037]
 gi|308115404|gb|EFO52944.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus K5030]
 gi|328474440|gb|EGF45245.1| flagellar MS-ring protein [Vibrio parahaemolyticus 10329]
          Length = 580

 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 86/417 (20%), Positives = 187/417 (44%), Gaps = 36/417 (8%)

Query: 19  RTRILILASVILVP--IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76
           R  +L+L+  I V   +MLF    F+V  P    L    +  ++  +   L +  I++++
Sbjct: 53  RQVVLVLSISICVALIVMLF----FWVKEPEMRPLGA-YDTEELIPVLDYLDQQKINYKL 107

Query: 77  SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136
             +G+++SV SS     ++ +   G+ + ++ +G ++  +   FG++  +++     + E
Sbjct: 108 --DGNTVSVESSEYNSIKLGMVRSGV-NQATEAGDDILLQDMGFGVSQRLEQERLKLSRE 164

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHL 194
            ++A+ I+ +  +  ARV + +P    F +     +ASV +     +  K  E  +I  +
Sbjct: 165 RQLAQAIEEMKQVRKARVLLALPKHSVFVRHNQEASASVFLTLSTGANLKQQEVDSIVDM 224

Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKALAAF 252
           VA+AVP +    +TV D  G+LL++   +       K   + ++ +  +   I+  L   
Sbjct: 225 VASAVPGMKTSRITVTDQHGRLLSSGSQDPASAARRKEQELERSQEQALREKIDSVLLPI 284

Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------TSQPE 303
           LG  N+ + V  +++    +     +DP++   RS    +D              ++QP 
Sbjct: 285 LGFGNYTAQVDIQMDFSAVEQTRKRFDPNTPSTRSEYALEDYNNGNMVAGIPGALSNQPP 344

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
           +  ++ Q++  + D  V    S+    +KE   N+E++T           + R +++V +
Sbjct: 345 ADASIPQDVAQMKDGSVMGQGSV----RKESTRNFELDTTISHERKQTGTVARQTVSVAI 400

Query: 364 NKGR-----LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
              R       EV      +G+I++    I +++    G +  RGD + + S+ F E
Sbjct: 401 KDRRQVNPDTGEVTYTPMSEGEINA----IRQVLIGTVGFDQSRGDLLNVLSVKFAE 453


>gi|158320512|ref|YP_001513019.1| flagellar M-ring protein FliF [Alkaliphilus oremlandii OhILAs]
 gi|158140711|gb|ABW19023.1| flagellar M-ring protein FliF [Alkaliphilus oremlandii OhILAs]
          Length = 515

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 98/425 (23%), Positives = 188/425 (44%), Gaps = 52/425 (12%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           I +QL ++F+    + + + ++LAS  +  ++      ++ + P Y  LY  L       
Sbjct: 8   IRNQLNEYFQG---MDKKKKIMLASGTIFILLALTGIIYYFSRPEYVELYSNLRPEQTGE 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L+E NI  +       I VP     +A++ +A +GLPS+  +  +E     NSF +
Sbjct: 65  IIERLTENNIKAKFGQTSGIILVPKEDQKRAQVVVATEGLPSAKFS--FEDVFSGNSFMM 122

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMIRAI 180
           TS  +    V AL+  +A  I+ I+G+ +A V +V+P+   F  +       ASV +   
Sbjct: 123 TSEEKSKQYVYALQNYLASIIEEINGVKSANVALVVPENSGFILKNNNNLAKASVRLDLQ 182

Query: 181 NPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS---LSIVQ 235
             ++    S   I  LV+ AV  L   +VT+  S G++L  +  E + +  S   L++ Q
Sbjct: 183 GNAILDKNSINGIAILVSNAVEGLSPENVTIHGSDGRVLNTDSDEDSDVFASNNNLALQQ 242

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ--QIREI---VYDPDSKVERSIR- 289
           +++ ++E +I   L+   G  N       +L+ D++  +I+E    +    + + RS++ 
Sbjct: 243 SVKEKLEESITNFLSNVYGYGNIVVMANVKLDFDSEVTEIKEFAPPIEGETTGIPRSLQE 302

Query: 290 LSKDA-------------QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQS 336
           LSK++                + + P   V  ++     S+      R++          
Sbjct: 303 LSKESVNGGTGGAPGTPTNADDDTDPAQYVVGDEEYSTYSEAS----RTI---------- 348

Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT 396
           NYEIN           +++ +++AV VN   L       AD         ++  I+SAA 
Sbjct: 349 NYEINELYKKIVKAQGQVKDITVAVFVNSAAL-------ADGDLTAEQRTDLANIISAAA 401

Query: 397 GINSR 401
           G++++
Sbjct: 402 GLDTK 406


>gi|150388445|ref|YP_001318494.1| flagellar M-ring protein FliF [Alkaliphilus metalliredigens QYMF]
 gi|149948307|gb|ABR46835.1| flagellar M-ring protein FliF [Alkaliphilus metalliredigens QYMF]
          Length = 517

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 101/414 (24%), Positives = 191/414 (46%), Gaps = 33/414 (7%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           I +QL ++ +      + +I + A  IL+ +   +   +F + P Y  LY  L   +   
Sbjct: 8   IRNQLNEYIQGLDKNKKIKIGLSALFILISLTGII---YFFSRPDYVVLYNNLNPEESGS 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +   L  +NI     D   +I V      +A++ +A QGLP++  +  YE     NS+ +
Sbjct: 65  VMETLQGSNIRADFGDTSGTILVRKQDEKRAQVVVATQGLPTARFS--YEDAFSGNSWMM 122

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI--GARPTASVMIRAI 180
           TS  +    + A +  +A T++ I G+  A V++ +P+   F      A   ASV +   
Sbjct: 123 TSEERAQRILIAQQNYLASTMEEIPGVSKAVVNLTIPERTGFMMADNNANAKASVWLDIS 182

Query: 181 NPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKS--LSIVQ 235
           + +  +S   + I  LV+ AV  L+  +VT+    G++L      + ++LG S  +++ Q
Sbjct: 183 SNANLESGSIKGIAILVSNAVQGLEPENVTIHGPDGRVLNQEAGSDSSLLGASDQMNLQQ 242

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
           A+Q ++E +I   L++  G  N        L  D+     + + P  + + +  +    +
Sbjct: 243 AVQKDLEKSITDFLSSVYGHGNVVVMAGVRLGFDSNVTELVEFAPPIEGQETGIIRSMHE 302

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT------DKKEEQSNYEINT--KSIAT 347
            + T+       +    P+V D    +P+++E+       D+  +  NYEIN   + I  
Sbjct: 303 LTHTAIDGPGGGIPGVDPNVGD----IPQNVEDDEYLSRYDEASQTINYEINELRQKIVK 358

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR 401
            H   ++  +S+AV VNK  L +  G  +DQ +      E+  IVSAA G+++R
Sbjct: 359 AHG--QVHDISVAVYVNKSTLAD--GDLSDQER-----RELINIVSAAAGLDTR 403


>gi|254706489|ref|ZP_05168317.1| flagellar MS-ring protein [Brucella pinnipedialis M163/99/10]
          Length = 207

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 84/177 (47%), Gaps = 17/177 (9%)

Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440
           +D  + +I  +V+ A G+N+ RGD I +T+++FL+    +   V   + D L R   +  
Sbjct: 16  VDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGADMEPVSAPWTDTLLRQSGSYA 75

Query: 441 NALVFLVGTLLVTFLGLHALRRLHNIDDA-------KKGEVGGKSILSPPPISSAVTTGL 493
           NAL  L    L+ + GL  L R  N+  A       + GEV      +P  I  A + G 
Sbjct: 76  NALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAGEVA-----TPNFIGGAESVGE 130

Query: 494 MPNDNIALDSSNQDIFSHS-RNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549
                I   ++  D    S  +L+ R+       + LRL  MIE++EER A +L++W
Sbjct: 131 GVQAVIGGPAAYADQMKTSLSDLRQRMR----MPAKLRLEQMIEMDEERVAAVLKQW 183


>gi|150390487|ref|YP_001320536.1| flagellar M-ring protein FliF [Alkaliphilus metalliredigens QYMF]
 gi|149950349|gb|ABR48877.1| flagellar M-ring protein FliF [Alkaliphilus metalliredigens QYMF]
          Length = 517

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 99/412 (24%), Positives = 189/412 (45%), Gaps = 29/412 (7%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           I +QL ++ +      + +I + A  IL+ +   +   +F + P Y  LY  L   +   
Sbjct: 8   IRNQLNEYVQGLDKNKKIKIGLSALFILISLTGII---YFFSRPDYVVLYNNLNPEESGS 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +   L  +NI     D   +I V      +A++ +A QGLP++  +  YE     NS+ +
Sbjct: 65  VMETLQGSNIRADFGDTSGTILVRKQDEKRAQVVVATQGLPTARFS--YEDAFSGNSWMM 122

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI--GARPTASVMIRAI 180
           TS  +    + A +  +A T++ I G+  A V++ +P+   F      A   ASV +   
Sbjct: 123 TSEERAQRILIAQQNYLASTMEEIPGVSKAVVNLTIPERTGFMMADNNANAKASVWLDIS 182

Query: 181 NPSVYKSA--EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKS--LSIVQ 235
           + +  +S   + I  LV+ AV  L+  +VT+    G++L      + ++LG S  +++ Q
Sbjct: 183 SNANLESGSIKGIAILVSNAVQGLEPENVTIHGPDGRVLNQEAGSDSSLLGASDQMNLQQ 242

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
           A+Q ++E +I   L++  G  N        L  D+     + + P  + + +  +    +
Sbjct: 243 AVQKDLEKSITDFLSSVYGHGNVVVMAGVRLGFDSNVTELVEFAPPIEGQETGIIRSMHE 302

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT------DKKEEQSNYEINTKSIATTH 349
            + T+       +    P+V D    +P+++E+       D+  +  NYEIN        
Sbjct: 303 LTHTAIDGPGGGIPGVDPNVGD----IPQNVEDDEYLSRYDEASQTINYEINELRQKIVR 358

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR 401
            + ++  +S+AV VNK  L +  G  +DQ +      E+  IVSAA G+++R
Sbjct: 359 AHGQVHDISVAVYVNKSTLAD--GDLSDQER-----RELINIVSAAAGLDTR 403


>gi|90579927|ref|ZP_01235735.1| flagellar M-ring protein [Vibrio angustum S14]
 gi|90438812|gb|EAS63995.1| flagellar M-ring protein [Vibrio angustum S14]
          Length = 582

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 92/420 (21%), Positives = 187/420 (44%), Gaps = 34/420 (8%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           R  IL+L+  I V +++ +    ++  P    L    E  ++  I     +  I++++  
Sbjct: 52  RQVILVLSVAICVALIVLVT--MWIKEPEMRPLGT-YETEELIPILDHFDQKKIEYQL-- 106

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           +G++I VP+      ++ L   GL ++ +  G ++  +   FG++  M+      + E +
Sbjct: 107 DGNTIRVPADEYSAIKLDLTRTGL-NAQTAEGDDILLQDMGFGVSQRMESERLKLSRERQ 165

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVA 196
           +AR I+ IS +  A+V +  P    F +     TA+V +   +       E  +I  +VA
Sbjct: 166 LARAIEQISQVRKAQVLLATPKQSVFVRHNQEATATVFLTLSSGGSLGQQEVDSIVDMVA 225

Query: 197 AAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKALAAFLG 254
            AVP L    VTV D  G+LL++   + +     K   + +  +  +   I+  L   LG
Sbjct: 226 TAVPGLRPTRVTVTDQHGRLLSSGTEDPSTTAKRKEYELERKQEQALREKIDAILMPVLG 285

Query: 255 VDNFRSAVVAELNMDTQQIREI--VYDPDSKVERSIRLSKDAQRSE---------TSQPE 303
           + N+ S V  ++ MD   + E    YDP +   RS    +D              ++QP 
Sbjct: 286 LGNYTSQV--DVAMDFSALEETRKRYDPSTAATRSEFTLEDINGGNQVAGIPGALSNQPP 343

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
               + QN+  +           + +  +E   NYE++T           ++R +++V V
Sbjct: 344 VESAIPQNVKDMQSGT----NGSDGSVHRESTRNYELDTTISHKRAQTGVIDRQTVSVAV 399

Query: 364 NKGRLTEVLGRSADQGKI---DSYLAEINKIVSAATGINSRRGDTITITSMDFL--ENQL 418
           +   +T+   ++ D  ++   ++ +A+I +++    G +  RGD + + S+ F+  E+QL
Sbjct: 400 DYKTITDP--KTGDVTRVPVSEAEIAKIRRLLMGGIGFSEARGDLLEVLSVPFVLPESQL 457


>gi|261313943|ref|ZP_05953140.1| flagellar MS-ring protein FliF [Brucella pinnipedialis M163/99/10]
 gi|261302969|gb|EEY06466.1| flagellar MS-ring protein FliF [Brucella pinnipedialis M163/99/10]
          Length = 192

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 84/177 (47%), Gaps = 17/177 (9%)

Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440
           +D  + +I  +V+ A G+N+ RGD I +T+++FL+    +   V   + D L R   +  
Sbjct: 1   MDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGADMEPVSAPWTDTLLRQSGSYA 60

Query: 441 NALVFLVGTLLVTFLGLHALRRLHNIDDA-------KKGEVGGKSILSPPPISSAVTTGL 493
           NAL  L    L+ + GL  L R  N+  A       + GEV      +P  I  A + G 
Sbjct: 61  NALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAGEVA-----TPNFIGGAESVGE 115

Query: 494 MPNDNIALDSSNQDIFSHS-RNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549
                I   ++  D    S  +L+ R+       + LRL  MIE++EER A +L++W
Sbjct: 116 GVQAVIGGPAAYADQMKTSLSDLRQRMR----MPAKLRLEQMIEMDEERVAAVLKQW 168


>gi|262166236|ref|ZP_06033973.1| flagellar M-ring protein FliF [Vibrio mimicus VM223]
 gi|262025952|gb|EEY44620.1| flagellar M-ring protein FliF [Vibrio mimicus VM223]
          Length = 510

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 80/358 (22%), Positives = 158/358 (44%), Gaps = 27/358 (7%)

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           +G++I VP S     ++ +   GL +    +G E+  +   FG++  +++     + E +
Sbjct: 39  DGNTILVPVSDYNSLKLSMVRAGL-NQERQAGDEILMQDMGFGVSQRLEQERLKLSRERQ 97

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVA 196
           +A+ I+ +  I  ARV + +P    F +     +ASV +     +  K  E  A+  +VA
Sbjct: 98  LAKAIEEMRQINKARVLLALPKQSVFVRQNQEASASVFLSLRTGANLKQEEIDAVVDMVA 157

Query: 197 AAVPNLDMGDVTVLDSTGKLLTANEME------RNILGKSLSIVQAIQHEIEMNINKALA 250
           +AVP +    VTV D  G+LL++   +      R          +A++ +    I+  L 
Sbjct: 158 SAVPGMKPSRVTVTDQHGRLLSSGSQDPVSAARRKEQELEKQQEEALRGK----IDSVLI 213

Query: 251 AFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------TSQ 301
             LG+ N+ + V  EL+    +    V+DP++   RS    +D              ++Q
Sbjct: 214 PILGLGNYTAQVDIELDFSAVEQTRKVFDPNTPATRSEYTLEDYNNGNVVAGVPGALSNQ 273

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
           P +  ++ Q++  + D  V      + +  KE   N+E++T        +  + R ++AV
Sbjct: 274 PPADASIPQDVAQMKDGSV----MGQGSVHKEATRNFELDTTISHERKQSGVVNRQTVAV 329

Query: 362 VV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
            V ++  +    G        ++ L  I +I+    G +  RGD + + SM F E ++
Sbjct: 330 AVKSRSNVNSETGEVTYTPLSEADLNSIRQILIGTVGYSENRGDLLNVLSMPFAEPEV 387


>gi|88800453|ref|ZP_01116017.1| flagellar M-ring protein FliF [Reinekea sp. MED297]
 gi|88776783|gb|EAR07994.1| flagellar M-ring protein FliF [Reinekea sp. MED297]
          Length = 268

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 1/117 (0%)

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
           D   +   L   NIDF I  +   + V  + + +AR+ +A  GL S     GYEL D+  
Sbjct: 103 DARELIEVLQANNIDFDIDPSSGVLLVRQNDLHQARLAVAGAGL-SDDQTVGYELLDQDQ 161

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
             G + FM+    +R+LEGE+ARTI SI+ +  ARVH+ +P+   F +     TASV
Sbjct: 162 PLGQSQFMENARYLRSLEGELARTISSINQVKTARVHLAIPERSVFVRDRRETTASV 218


>gi|226313070|ref|YP_002772964.1| flagellar M-ring protein [Brevibacillus brevis NBRC 100599]
 gi|226096018|dbj|BAH44460.1| probable flagellar M-ring protein [Brevibacillus brevis NBRC
           100599]
          Length = 220

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 103/200 (51%), Gaps = 16/200 (8%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLY-VKLEVSDVNRISVALSEANIDFRIS 77
           +  IL ++  +L+ + L++   +  + P Y  LY  KL   ++  I   L  + I ++I+
Sbjct: 24  KWMILGISLFLLISLGLYI---YIASQPVYKPLYNQKLSEQEIGTIKQELEASQIPYQIT 80

Query: 78  DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137
            NG+SI VP  M     + LAAQG+PS +  +  E+F   ++ G+T    ++ +  AL+ 
Sbjct: 81  GNGTSIEVPEKMAQDVIVDLAAQGIPSQAGINA-EIFS--STLGVTDRQFDVMKKEALQQ 137

Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARP---TASVMIRAINPSV---YKSAEAI 191
           E+ + ++ + G+ +A+V I +P    +  +   P   TASV++  + P      K   ++
Sbjct: 138 ELRKMLERVKGVRSAQVMITLPQESVW--VTETPDTATASVIVD-VEPGTTLDQKQINSL 194

Query: 192 RHLVAAAVPNLDMGDVTVLD 211
             LV+ +VP L M  + + D
Sbjct: 195 YLLVSRSVPKLPMEAIAITD 214


>gi|119775432|ref|YP_928172.1| flagellar MS-ring protein [Shewanella amazonensis SB2B]
 gi|119767932|gb|ABM00503.1| flagellar M-ring protein FliF [Shewanella amazonensis SB2B]
          Length = 565

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 91/397 (22%), Positives = 182/397 (45%), Gaps = 40/397 (10%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  L  K E  ++ ++   L +  I +++  +   + VP       R+ L+  
Sbjct: 55  MWAQEPEYRPLG-KFEAQEMIQVLDVLDKNKIPYQV--DFDVLRVPEDKYQDIRLLLSRN 111

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           G+  ++S +  +   +   FG++  +++     + E  +ARTI+ +  +  A+V + +P 
Sbjct: 112 GV-DAASTTNQDFLSQDMGFGVSQRLEQARLKHSQEQNLARTIEELKSVSRAKVILALPK 170

Query: 161 MGSFRKIGARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
              F +  ++ +A+V++ +    +  +  +AI  +VA+AV  L+   VTV DS G+LL +
Sbjct: 171 ENVFARNQSKASATVVVTSRRGGLGQEEVDAIVDIVASAVQGLEPTRVTVTDSNGRLLNS 230

Query: 220 NEME--RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
              +       + L +V+  + E    ++  L   LG +N+ S V  ++ MD   + +  
Sbjct: 231 GSQDGASARARRELELVKQKEAEYRAKVDAILMPILGPENYTSQV--DVTMDFTAVEQT- 287

Query: 278 YDPDSKVERSIRLSKD--AQRSETSQPESAVTVEQNM--PHVSDRKVPL----PRSL-EN 328
                    S R + D  A RSE +  E+  + E NM  P     + P+    P++L E 
Sbjct: 288 ---------SKRFNPDLPAVRSEMTL-ETQTSGEANMGIPGALSNQPPMESNIPQTLQEA 337

Query: 329 TDK--------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTE--VLGRSADQ 378
            DK        +E   NYE++T +I+ T     + R     V    +  E    G+    
Sbjct: 338 QDKAQANGNSHREATRNYELDT-TISHTRQQIGVVRRVSVSVAVDYKTGEANTEGQVNRV 396

Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
            + ++ LA I +++  A G + +RGD+I + ++ F++
Sbjct: 397 ARTEAELANIRRLLEGAVGFSGQRGDSIEVVTVPFMD 433


>gi|307718598|ref|YP_003874130.1| flagellar M-ring protein [Spirochaeta thermophila DSM 6192]
 gi|306532323|gb|ADN01857.1| flagellar M-ring protein [Spirochaeta thermophila DSM 6192]
          Length = 569

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 97/397 (24%), Positives = 171/397 (43%), Gaps = 58/397 (14%)

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I+  L E N+ ++++ +   +        + R  L  + L    ++  +ELFD +  + +
Sbjct: 67  ITTRLEEENVPYQVTADNRILVSDEKTARRMRAILVREDLVPRGTDP-WELFD-IERWTI 124

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T F + +   RA+   +   ++++  I  A V +V+P+   F +    P+AS++I    P
Sbjct: 125 TDFERNVNLRRAITRTVEEHLKALDDIDDASVTLVLPEKALFAEDQEPPSASIII-VPKP 183

Query: 183 -----SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MER----NILGKSLS 232
                S  K  E I  LV  AV  LD  ++T+ D  G +L   E ME+     +  + L 
Sbjct: 184 GSDITSNRKKIEGIVKLVQFAVEGLDPENITITDQRGVVLNDFEGMEQFDRLELARRQLK 243

Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVV---AELNMDTQQIR-----EIVYDPD--- 281
             Q +++E +  I  ALA     D  R  +V    EL+M   +++      I   PD   
Sbjct: 244 TKQELENEYKKRILSALATVFRPD--RVEIVNLDIELDMSDVEVKTEEHFPITMKPDNPR 301

Query: 282 -----SKVERSIRLSKDAQRSETS----QPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332
                S+V  SI LSK+ Q  +       PE     E   P       P  + LE    K
Sbjct: 302 TPYDESEVVPSITLSKEIQDEKFEGTGFNPEGPPGQEGQTP-------PAYKDLEGLVGK 354

Query: 333 EEQS----NYEINTKSIATTHDNYKLERLSIAVVVN---------KGRLTEVLGRSADQG 379
             ++    N  +NT++I    D ++++R+S+AV ++         KG +      S  + 
Sbjct: 355 YSRNSVIQNEVVNTRNITERKDPWEIKRISVAVALDGVWKWEYNEKGEVVFNPDGSIKRT 414

Query: 380 KI---DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
            +   D  + +  +++ AA G    RGD IT+  + F
Sbjct: 415 YLPVSDEDIRKAEELIKAAVGYKRERGDLITVQHIQF 451


>gi|313624697|gb|EFR94654.1| flagellar M-ring protein FliF [Listeria innocua FSL J1-023]
          Length = 549

 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 93/412 (22%), Positives = 182/412 (44%), Gaps = 55/412 (13%)

Query: 42  FVNSPHYD-NLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           ++N+P  +  LY  L  +   +++  L++  +D+ +  +G+ I V   +    R   A  
Sbjct: 33  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91

Query: 101 GLPSSSSNSGYELFDKVNSFGLTS---FMQEITRVRA-LEGEIARTIQSISGIV-AARVH 155
           G+P +  +    L +  +S G +     MQE    +  LE EI   +QS    V +A V 
Sbjct: 92  GIPYTGQDGNDILLN--SSLGASEEDKKMQEKVGTKVNLEKEI---VQSYGTTVDSASVQ 146

Query: 156 IVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDS 212
           + +P+  S F +   + TA+V ++  N       +   I+  V+AAVPN+   DV ++D+
Sbjct: 147 LTLPESSSIFEEASQKGTAAVTLKTKNNQTLTKEQVLGIQRTVSAAVPNVASDDVAIIDT 206

Query: 213 TGKLL----TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM 268
              ++    T+ E   +     + I  AI   ++ +I   L++   +DNFR      +N 
Sbjct: 207 KNGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVTVNF 266

Query: 269 DTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE 327
           D  +     Y  D KV  + +  S D  +  T+Q ES      ++P+ +++      +  
Sbjct: 267 DEIKQNTEHYPNDGKVRSNQKDTSTDTSKGSTNQTESGTASNADVPNYTEQNGDDTNTY- 325

Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE 387
            ++K  E +NYE+++ +I     +  L + ++ V V++        +S ++  +D  +AE
Sbjct: 326 TSEKSSETTNYELDS-TIQEIKKHPALAKTNVVVWVDQ--------QSLNKNGVD--MAE 374

Query: 388 INKIVSAATGINS----------------------RRGDTITITSMDFLENQ 417
             K +  + G+                        + GD +TI  + FL+NQ
Sbjct: 375 FTKAIGVSAGLTPNMTTEEAGEGGEAATPTFEGTFQNGD-VTIMPIQFLDNQ 425


>gi|253573518|ref|ZP_04850861.1| flagellar M-ring protein FliF [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251847046|gb|EES75051.1| flagellar M-ring protein FliF [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 527

 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 166/351 (47%), Gaps = 37/351 (10%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
            Y+  +  L+ +D   I   L    I +++  +G++ISVPS    + ++ + +QG+  + 
Sbjct: 49  EYEVAFTGLDSTDAAGIINYLESGGISYKLGPDGTTISVPSKDAARVKVDVGSQGIVQNG 108

Query: 107 SNSGYELFDKVNSF-GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
           S  G E F++ +S  G+T     +    A+ GE+ + ++ + G+  A+V I +P    F 
Sbjct: 109 S-IGLEAFNESSSLIGMTDNEFNVKYKNAINGEVEQLLKRMQGVNDAKVLINLPAENVFA 167

Query: 166 KIG--ARPTASVMIRAINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLLTAN 220
                 + TAS+++    P    + EAI    +LV  +VPNL + ++++  S   +L  +
Sbjct: 168 SPDEQEKATASIVL-TFKPGYRPNQEAIDGYFNLVKTSVPNLPVENISLSSSDDTILLPS 226

Query: 221 EMERNILGKSLSIVQ---AIQHEIEMNINKALAAFL----GVDNFRSAVVAELNMDTQQI 273
             +    G   S VQ   A+Q + E ++ +++  FL    G D     V ++LN D    
Sbjct: 227 -GQGGTTGSLTSAVQENMALQKKFESDVRQSVKQFLSRLTGPDKIEVLVASKLNFDQVSQ 285

Query: 274 REIVYDP-DSKVERSIRLS-KDAQRSET--SQPESAV--TVEQNMPHVSDRKVPLPRSLE 327
           ++ +  P D++  + I +S +  Q+S T  + P S V  T E+++       V  P S  
Sbjct: 286 KDNLVTPVDTENMKGIEISAQKVQKSYTGSANPTSGVPGTGEEDV-------VNYPSSET 338

Query: 328 NTDKKEEQS----NYEIN--TKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372
           N     E+S    NYE+N  TK I  +   Y ++ L+I V V      E L
Sbjct: 339 NGGSSSEESSSTINYEVNRITKDIIASP--YVIKDLTINVAVEPPEGQETL 387


>gi|313620042|gb|EFR91558.1| flagellar M-ring protein FliF [Listeria innocua FSL S4-378]
          Length = 550

 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 85/371 (22%), Positives = 170/371 (45%), Gaps = 32/371 (8%)

Query: 42  FVNSPHYD-NLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           ++N+P  +  LY  L  +   +++  L++  +D+ +  +G+ I V   +    R   A  
Sbjct: 33  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91

Query: 101 GLPSSSSNSGYELFDKVNSFGLTS---FMQEITRVRA-LEGEIARTIQSISGIV-AARVH 155
           G+P +  +    L +  +S G +     MQE    +  LE EI   +QS    V +A V 
Sbjct: 92  GIPYTGQDGNDILLN--SSLGASEEDKKMQEKVGTKVNLEKEI---VQSYGTTVDSASVQ 146

Query: 156 IVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDS 212
           + +P+  S F +   + TA+V ++  N       +   I+  V+AAVPN+   DV ++D+
Sbjct: 147 LTLPESSSIFEEASQKGTAAVTLKTKNNQTLTKEQVLGIQRTVSAAVPNVASDDVAIIDT 206

Query: 213 TGKLL----TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM 268
              ++    T+ E   +     + I  AI   ++ +I   L++   +DNFR      +N 
Sbjct: 207 KNGVISEADTSQEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVTVNF 266

Query: 269 DTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE 327
           D  +     Y  D KV  + +  S D  +  T+Q ES      ++P+ +++      +  
Sbjct: 267 DEIKQNTEHYPNDGKVRSNQKETSTDTSKGSTNQTESGTASNADVPNYTEQNGDDTNTY- 325

Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE 387
            ++K  E +NYE+++ +I     +  L + ++ V V++        +S ++  +D  +AE
Sbjct: 326 TSEKSSETTNYELDS-TIQEIKKHPALAKTNVVVWVDQ--------QSLNKNGVD--MAE 374

Query: 388 INKIVSAATGI 398
             K +  + G+
Sbjct: 375 FTKAIGVSAGL 385


>gi|315186389|gb|EFU20149.1| flagellar M-ring protein FliF [Spirochaeta thermophila DSM 6578]
          Length = 569

 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 110/450 (24%), Positives = 191/450 (42%), Gaps = 70/450 (15%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD---VNRISVALSEANI 72
           SL +  I I   V+LV  ++F+A+     +P    L  K  ++D   +  I+  L E N+
Sbjct: 20  SLVQKIIFISIVVVLVGSLVFLAS--LSGAPSMVPLLNKA-ITDPQVLEDITTRLEEENV 76

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
            ++++ +   +        + R  L  + L    ++  +ELFD +  + +T F + +   
Sbjct: 77  PYQVTADNRILVSDEKTARRMRAILVREDLVPRGTDP-WELFD-IERWTITDFERNVNLR 134

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP-----SVYKS 187
           RA+   +   ++++  I  A V +V+P+   F +    P+AS++I    P     S  K 
Sbjct: 135 RAITRTVEEHLKALDDIDDASVTLVLPEKALFAEDQEPPSASIII-VPKPGSDITSNRKK 193

Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MER----NILGKSLSIVQAIQHEIE 242
            E I  LV  AV  LD   +T+ D  G +L   E ME+     +  + L   Q +++E +
Sbjct: 194 IEGIVKLVQFAVEGLDPDYITITDQRGVVLNDFEGMEQFDRLELARRQLKTKQELENEYK 253

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMD-----------TQQIREIVYDPD--------SK 283
             I  AL        FRS  V  +N+D           T++   I   PD        S+
Sbjct: 254 KRILSALGTV-----FRSDRVEIVNLDIELDMSDVEVKTEEHFPITMKPDNPRTPYDESE 308

Query: 284 VERSIRLSKDAQRSETS----QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQS--- 336
           V  SI LSK+ Q  +       PE     E   P       P  + LE    K  ++   
Sbjct: 309 VVPSITLSKEIQDEKFEGTGFNPEGPPGQEGQTP-------PAYKDLEGLVGKYSRNSLI 361

Query: 337 -NYEINTKSIATTHDNYKLERLSIAVVVN---------KGRLTEVLGRSADQGKI---DS 383
            N  +NT++I    D ++++R+S+AV ++         KG +      S  +  +   D 
Sbjct: 362 QNEVVNTRNITERKDPWEIKRISVAVALDGVWKWEYNEKGEVVFNPDGSIKRTYLPVSDE 421

Query: 384 YLAEINKIVSAATGINSRRGDTITITSMDF 413
            L +  +++  A G    RGD IT+  + F
Sbjct: 422 DLRKAEELIKGAVGYKRERGDLITVQHIQF 451


>gi|16799796|ref|NP_470064.1| flagellar MS-ring protein [Listeria innocua Clip11262]
 gi|16413173|emb|CAC95953.1| lin0721 [Listeria innocua Clip11262]
          Length = 550

 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 85/371 (22%), Positives = 170/371 (45%), Gaps = 32/371 (8%)

Query: 42  FVNSPHYD-NLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           ++N+P  +  LY  L  +   +++  L++  +D+ +  +G+ I V   +    R   A  
Sbjct: 33  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91

Query: 101 GLPSSSSNSGYELFDKVNSFGLTS---FMQEITRVRA-LEGEIARTIQSISGIV-AARVH 155
           G+P +  +    L +  +S G +     MQE    +  LE EI   +QS    V +A V 
Sbjct: 92  GIPYTGQDGNDILLN--SSLGASEEDKKMQEKVGTKVNLEKEI---VQSYGTTVDSASVQ 146

Query: 156 IVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDS 212
           + +P+  S F +   + TA+V ++  N       +   I+  V+AAVPN+   DV ++D+
Sbjct: 147 LTLPESSSIFEEASQKGTAAVTLKTKNNQTLTKEQVLGIQRTVSAAVPNVASDDVAIIDT 206

Query: 213 TGKLL----TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM 268
              ++    T+ E   +     + I  AI   ++ +I   L++   +DNFR      +N 
Sbjct: 207 KNGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVTVNF 266

Query: 269 DTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE 327
           D  +     Y  D KV  + +  S D  +  T+Q ES      ++P+ +++      +  
Sbjct: 267 DEIKQNTEHYPNDGKVRSNQKETSTDTSKGSTNQTESGTASNADVPNYTEQNGDDTNTY- 325

Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE 387
            ++K  E +NYE+++ +I     +  L + ++ V V++        +S ++  +D  +AE
Sbjct: 326 TSEKSSETTNYELDS-TIQEIKKHPALAKTNVVVWVDQ--------QSLNKNGVD--MAE 374

Query: 388 INKIVSAATGI 398
             K +  + G+
Sbjct: 375 FTKAIGVSAGL 385


>gi|289433991|ref|YP_003463863.1| flagellar M-ring protein [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170235|emb|CBH26775.1| flagellar M-ring protein [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 547

 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 95/423 (22%), Positives = 184/423 (43%), Gaps = 56/423 (13%)

Query: 29  ILVPIMLFMAARFFVNSPHYD-NLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPS 87
           + V + +F+    ++N+P  +  LY  L  +   +++  L++  +D+ +  +G+ I V  
Sbjct: 23  LFVVVTVFL---LYLNTPKTEITLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDE 78

Query: 88  SMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS---FMQEITRVRA-LEGEIARTI 143
            +    R   A  G+P +  +    L +  +S G +     MQE    +  LE EI   +
Sbjct: 79  KVETLVRDKFADLGIPYTGQDGNDILLN--SSLGASEEDKKMQEKVGTKVNLEKEI---V 133

Query: 144 QSISGIV-AARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAV 199
           QS    V +A V + +P+  S F +   + +A+V ++  N     S +   I+  V+AAV
Sbjct: 134 QSYGTTVDSASVQLTLPESSSIFEEASQKGSAAVTLKTKNNQTLTSEQVLGIQRTVSAAV 193

Query: 200 PNLDMGDVTVLDSTGKLL----TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255
           PN+   DV ++D+   ++    T  E   +     + I  AI   ++ +I   L++   +
Sbjct: 194 PNVASEDVAIIDTKNGVISEADTTKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFAL 253

Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPH 314
           DNFR      +N D  +     Y  D KV  + +  S D  +  T+  ES      ++P+
Sbjct: 254 DNFRVNTSVTVNFDEIKQNTERYPNDGKVRSNQKDTSTDTSKGSTNTTESGTAANADVPN 313

Query: 315 VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR 374
            ++       +   ++K  E +NYE+++ +I     +  L + ++ V V++  L      
Sbjct: 314 YTEENGGDTNTY-TSEKSSETTNYELDS-TIQEIKKHPALAKTNVVVWVDQQAL------ 365

Query: 375 SADQGKIDSYLAEINKIVSAATGINS--------------------RRGDTITITSMDFL 414
             +   +D  +AE  K V  + G+                      + GD +TI  + FL
Sbjct: 366 --NNNGVD--MAEFTKAVGVSAGLTPNMATPEGAEEGATPTFEGTFQNGD-VTIMPIQFL 420

Query: 415 ENQ 417
           +NQ
Sbjct: 421 DNQ 423


>gi|315281378|ref|ZP_07870015.1| flagellar M-ring protein FliF [Listeria marthii FSL S4-120]
 gi|313614975|gb|EFR88482.1| flagellar M-ring protein FliF [Listeria marthii FSL S4-120]
          Length = 550

 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 83/370 (22%), Positives = 169/370 (45%), Gaps = 30/370 (8%)

Query: 42  FVNSPHYD-NLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           ++N+P  +  LY  L  +   +++  L++  +D+ +  +G+ I V   +    R   A  
Sbjct: 33  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91

Query: 101 GLPSSSSNSGYELFDKVNSFGLTS---FMQEITRVRA-LEGEIARTIQSISGIVAARVHI 156
           G+P +  +    L +  +S G +     MQE    +  LE EI ++  +   I +A V +
Sbjct: 92  GIPYTGQDGNDILLN--SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGTT--IDSASVQL 147

Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDST 213
            +P+  S F +   + TA+V ++  N     S +   I+  V+AAVPN+   DV ++D+ 
Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207

Query: 214 GKLL----TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
             ++    T+ E   +     + I  AI   ++ +I   L++   +DNFR      +N D
Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVTVNFD 267

Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
             +     Y  D KV  + +  S D  +  T+  ES      ++P+ +++      +   
Sbjct: 268 EIKQNTEHYPSDGKVRSNQKDTSTDTSKGSTNTTESGTASNADVPNYTEQNGDDTNTY-T 326

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           ++K  E +NYE+++ +I     +  L + ++ V V++  L        ++  +D  +AE 
Sbjct: 327 SEKSSETTNYELDS-TIQEIKKHPALAKTNVVVWVDQNAL--------NKNGVD--MAEF 375

Query: 389 NKIVSAATGI 398
            K +  + G+
Sbjct: 376 TKAIGVSAGL 385


>gi|116872102|ref|YP_848883.1| flagellar MS-ring protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116740980|emb|CAK20100.1| flagellar M-ring protein FliF [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 550

 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 98/406 (24%), Positives = 182/406 (44%), Gaps = 42/406 (10%)

Query: 42  FVNSPHYD-NLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           ++N+P  +  LY  L  +   +++  L++  +D+ +  +G+ I V   +    R   A  
Sbjct: 33  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91

Query: 101 GLPSSSSNSGYELFDKVNSFGLTS---FMQEITRVRA-LEGEIARTIQSISGIV--AARV 154
           G+P +  +    L +  +S G +     MQE    +  LE EI   +QS  GI   +A V
Sbjct: 92  GIPYTGQDGNDILLN--SSLGASEEDKKMQEKVGTKVNLEKEI---VQSY-GITVDSASV 145

Query: 155 HIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLD 211
            + +P+  S F +   + TA+V ++  N       +   I+  V+AAVPN+   DV ++D
Sbjct: 146 QLTLPESSSIFEEASQKGTAAVTLKTKNNQTLTKEQVLGIQRTVSAAVPNVASEDVAIID 205

Query: 212 STGKLL----TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELN 267
           +   ++    TANE   +     + I  AI   ++ +I   L++   +DNFR      +N
Sbjct: 206 TKNGVISEADTANEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVAVN 265

Query: 268 MDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSL 326
            D  +     Y  D KV  + +  S D  +  T+  ES      ++P+ ++      ++ 
Sbjct: 266 FDEIKQNTERYPNDGKVRSNQKDTSTDTSKGSTNTTESGTASNADVPNYTEENGG-DQNT 324

Query: 327 ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL----------TEVLGRSA 376
             ++K  E +NYE+++ +I     +  L + ++ V V++  L          T+ +G SA
Sbjct: 325 YTSEKSSETTNYELDS-TIQEIEKHPSLAKTNVVVWVDQQTLNKNGVDMAEFTKAIGVSA 383

Query: 377 DQGKIDSYLAEINKIVSAATGINS-----RRGDTITITSMDFLENQ 417
             G   +   E       AT   +     + GD +TI  + FL+NQ
Sbjct: 384 --GLTPNMTTEEAGAGGEATATPTFEGTFQNGD-VTIMPIQFLDNQ 426


>gi|327441055|dbj|BAK17420.1| flagellar biosynthesis/type III secretory pathway lipoprotein
           [Solibacillus silvestris StLB046]
          Length = 531

 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 57/265 (21%), Positives = 117/265 (44%), Gaps = 12/265 (4%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           +F        L+ ++  ++V RI+  L+   + + +++ G+ I VP + V   ++ LAAQ
Sbjct: 43  YFSTRTTMAQLFPEMSQAEVGRITEVLASQGVKYEVTNGGTVILVPENQVQDLQVSLAAQ 102

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           G P S        F     FG+T     + +   +E ++A  ++   G+  A V I +P+
Sbjct: 103 GYPDSGEID-TSFFTSNAGFGMTDNEFNVIKQATIETDLANLVRKFEGVKDASVMITLPE 161

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAEAIR---HLVAAAVPNLDMGDVTVLDSTGKLL 217
            G F K       + ++    P    S + I+   +LV+ ++PNL   ++T+++   +  
Sbjct: 162 EGVFLKDAKGEAQAAIVLDTAPGHKFSDDQIKGLFNLVSMSIPNLPKENITIMNQYSEYY 221

Query: 218 TANEMERNILG-----KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272
                E    G       + + + I+ +++  + + L   +G D     V A+++   + 
Sbjct: 222 DLASAENGDGGIDSVTGQMEVKKTIERDLQRQVQQMLGTLIGPDKVVVNVSADIDFKKEN 281

Query: 273 IREIVYDP-DSKVERSIRLSKDAQR 296
             E +  P D +    I +S  AQR
Sbjct: 282 REENLVRPVDEENMEGIEIS--AQR 304


>gi|315127319|ref|YP_004069322.1| flagellar MS-ring protein [Pseudoalteromonas sp. SM9913]
 gi|315015833|gb|ADT69171.1| flagellar MS-ring protein [Pseudoalteromonas sp. SM9913]
          Length = 571

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 102/475 (21%), Positives = 199/475 (41%), Gaps = 67/475 (14%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
            G  + R   LI+A  I + I +F+    +   P    L  K++  ++      L    I
Sbjct: 37  GGVDVLRQITLIVALAICLAIAIFVI--IWARQPDMRPLG-KMQTEELIETLDFLDAQKI 93

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
           D+++  +G+ +SV  +     ++ +  +GL      SG ++  +   FG++  ++     
Sbjct: 94  DYQL--DGNVVSVDETEYQNIKLLMTREGL-DQGPTSGSDIIMQDMGFGVSQRLERERLK 150

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKS 187
              E ++ARTI+ ++ +  A+V + +P    F +   +P+A+V++     R+++    + 
Sbjct: 151 HGREQQLARTIEELNNVTRAKVLLAIPKENVFARREKKPSATVVLTLKRGRSLDG---EE 207

Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG----KSLSIVQAIQHEIEM 243
            +++  ++A+AV  L+   VTV D  G+LL  N   +  L     K   I +  + E   
Sbjct: 208 VDSVVDMIASAVQGLEPSRVTVTDQNGRLL--NSGSQTSLAARSRKEYDIERKREQEYLE 265

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIV--YDPDSKVERSIRLSKDAQRSETSQ 301
            I+  L   +G+ N+ + V  +L+MD   + E    Y+PD            A RSET  
Sbjct: 266 KIDSILIPVVGLGNYTAQV--DLSMDFSAVEETQKRYNPDLP----------AVRSET-- 311

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDK------------------------KEEQSN 337
                T E+N  ++    V +P +L N                           KE   N
Sbjct: 312 -----TFEEN--NIGGLAVGIPGALTNQPPVNSTIPEDAMAGGAGTATSPSRTHKEATRN 364

Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG 397
           YE++T           + R+S++V V+        G +    +    L+ I +++    G
Sbjct: 365 YELDTTISHKRQQTGVIRRISVSVAVDYLPTVGENGETTMTPRSVEALSNIRRLLQGGVG 424

Query: 398 INSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452
            + +RGD + + ++ F+         + +   D   +    V+ ALV +V  L V
Sbjct: 425 FDMQRGDALEVVTVPFVREDSALDFELPLWEQDWFMKMMRLVLGALVIIVLILAV 479


>gi|299822289|ref|ZP_07054175.1| flagellar M-ring protein FliF [Listeria grayi DSM 20601]
 gi|299815818|gb|EFI83056.1| flagellar M-ring protein FliF [Listeria grayi DSM 20601]
          Length = 554

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 93/394 (23%), Positives = 176/394 (44%), Gaps = 38/394 (9%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYD-NLYVKLEVSDVNRISVALSEANIDFRIS 77
           +  IL+   VI+   +L+M      N P     L+  L  +   +++  L +  +D+ I 
Sbjct: 16  KVAILVGFFVIVTVALLYM------NQPSTKVTLFKNLSETSQTQVTDELGKIGVDYTID 69

Query: 78  DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS---FMQEITRVRA 134
            NG  I V  S+    R  +   G+P + ++    L +  +S G +     MQE    +A
Sbjct: 70  KNGD-ILVDKSVEKLVRDKMEEDGIPYTGTDGNDILLN--SSLGASEEDKKMQEQVGTKA 126

Query: 135 -LEGEIARTIQSISGIV-AARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE-- 189
            LE EI   +QS S +V +A V + MP+  S F +   + +A+V I+        +A+  
Sbjct: 127 NLEKEI---LQSYSNVVDSATVQMTMPESDSIFEEASQKGSAAVTIKTKGQMSLSTAQVQ 183

Query: 190 AIRHLVAAAVPNLDMGDVTVLDS-----TGKLLTANEMERNILGKSLSIVQAIQHEIEMN 244
            I+  V+AA+PN++  +V V+DS     +    TA +   +     + I  AI  +I+ +
Sbjct: 184 GIQRTVSAAIPNINAEEVAVIDSKRGVVSDSATTAKDEGSSAYKNEVDIQDAIGKDIKTD 243

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           I   L++   + NFR      +N D  + +   Y  D KV    + S   + + ++   S
Sbjct: 244 IEDTLSSIFALKNFRVNTNVTVNFDEIKQKTEKYPRDGKVRSEQKDSTTDKSTGSAGQAS 303

Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
                 ++P+ ++       S   ++K  E +NYE+++ ++     +  L + ++ V V+
Sbjct: 304 GTESNADVPNYTENG-GNSDSTYTSEKNSETTNYELDS-TMQEIKKHPALAKTNVVVWVD 361

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           +  L        D  ++D  + E  K V  A G+
Sbjct: 362 QNTL--------DANRVD--MNEFTKAVGVAAGL 385


>gi|172057888|ref|YP_001814348.1| flagellar MS-ring protein [Exiguobacterium sibiricum 255-15]
 gi|171990409|gb|ACB61331.1| flagellar M-ring protein FliF [Exiguobacterium sibiricum 255-15]
          Length = 522

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 76/342 (22%), Positives = 148/342 (43%), Gaps = 24/342 (7%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAA 99
           +++ P    LY KL   +  +++  L+E  +   +    +G +I VP       ++ LA 
Sbjct: 44  WLSKPTMTPLYSKLSPQEAGQVTEKLNEDGVKSEVVSGTDGVTILVPEESAENLKVELAT 103

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
            G+P S     Y  F +   FG T     I     ++ E+   I  ++GI AA+V I +P
Sbjct: 104 AGIPKSGQID-YSFFSENAGFGTTDKEMNILERDTMQTELENLITQVNGIDAAKVMITLP 162

Query: 160 DMGSFRKIGARP-TASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           +   F        T SV++ +   S    ++ + + HL+A ++PNL   ++T++D     
Sbjct: 163 EKSVFLSDKEETSTVSVVLTSSAGSDLNQQTVQGLYHLIAKSIPNLKEENITIMDQYFTY 222

Query: 217 LTANEMERNILGKS-LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM----DTQ 271
               +  +   G   + + +  + ++   I + L+  LG      +V A++++    + Q
Sbjct: 223 YEPGKGAQTAGGTDPMQLKKTTEKDLRQQIQQMLSVVLGPQKALVSVTADVDVTQRQEEQ 282

Query: 272 QIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDK 331
           ++ E V DPD K+E  +  ++    + T         E       +  +  P+    T  
Sbjct: 283 KLVEPV-DPD-KIEGIVTSAEKVAEAYT-----GAANEGTAGTGENETINFPQGTGTTGD 335

Query: 332 KEEQS----NYEINTKSIATTHDNYKLERLSIAVVVN--KGR 367
             E++    NYE+N  +   T   Y++  L I V+V   KG+
Sbjct: 336 TSEKTHDIINYEVNRITKQITGAPYEIRDLGIQVIVEPPKGQ 377


>gi|90411023|ref|ZP_01219037.1| flagellar M-ring protein [Photobacterium profundum 3TCK]
 gi|90328236|gb|EAS44547.1| flagellar M-ring protein [Photobacterium profundum 3TCK]
          Length = 580

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 84/414 (20%), Positives = 180/414 (43%), Gaps = 34/414 (8%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           R  IL+L+  I V +++ M    ++  P    L    + +++  I     +  + + +  
Sbjct: 51  RQVILVLSVSICVALIVMMV--MWIKEPEMRPLGT-YDTAELITILDHFDQTKVKYEL-- 105

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           +G++I VP+      ++ L   GL +++   G E+  +   FG++  ++      + E +
Sbjct: 106 DGNTIRVPADNFSSIQLGLTRAGL-NNAVAEGDEILLQDMGFGVSQRLEGERLKLSRERQ 164

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVA 196
           +AR I+ I  +  A+V + MP    F +     +A+V +        K  E  +I  +VA
Sbjct: 165 LARAIEQIRQVRKAQVLLAMPKQSVFVRHNQEASATVFLTLGTNGSLKQPEVDSIVDMVA 224

Query: 197 AAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKALAAFLG 254
           +AVP+L    VTV D  G+LL++   + +     K   + +  +  +   I+  L   LG
Sbjct: 225 SAVPSLKPNRVTVTDQHGRLLSSGTEDASATAQRKEYELERKQEQAMREKIDSILIPILG 284

Query: 255 VDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------TSQPESA 305
             N+ S V   ++   Q+     +DP +   RS    ++              ++QP + 
Sbjct: 285 FGNYTSQVDVAMDFSAQEETRKRFDPSTPSTRSEYTVENYNNGNIVAGIPGALSNQPPAD 344

Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365
            ++ Q++  +   +     S +    +E   N+E++T           + R +++V V+ 
Sbjct: 345 ASIPQDIADMQSGR----GSSDGASHREATRNFELDTVISHLRAQTGTVSRQTVSVAVDY 400

Query: 366 GRLTEVLGRSADQGKI------DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
             LT     + + G++      ++ L +I +++    G +  RGD + + +M F
Sbjct: 401 KSLT-----NPETGEVTRVPVSEAELLKIRRLLMGGVGFSEARGDMLEVIAMPF 449


>gi|254853083|ref|ZP_05242431.1| flagellar MS-ring protein [Listeria monocytogenes FSL R2-503]
 gi|258606431|gb|EEW19039.1| flagellar MS-ring protein [Listeria monocytogenes FSL R2-503]
          Length = 425

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 82/370 (22%), Positives = 168/370 (45%), Gaps = 30/370 (8%)

Query: 42  FVNSPHYD-NLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           ++N+P  +  LY  L  +   +++  L++  +D+ +  +G+ I V   +    R   A  
Sbjct: 33  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91

Query: 101 GLPSSSSNSGYELFDKVNSFGLTS---FMQEITRVRA-LEGEIARTIQSISGIVAARVHI 156
           G+P +  +    L +  +S G +     MQE    +  LE EI ++  +   I +A V +
Sbjct: 92  GIPYTGQDGNDILLN--SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGTT--IDSASVQL 147

Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDST 213
            +P+  S F +   + TA+V ++  N     S +   I+  V+AAVPN+   DV ++D+ 
Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207

Query: 214 GKLL----TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
             ++    T+ E   +     + I  AI   ++ +I   L++   +DNFR      +N D
Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVSVNFD 267

Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
             +     Y  D KV  + +  S D  +   +  ES      ++P+ +++      +   
Sbjct: 268 EIKQNTEHYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTY-T 326

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           ++K  E +NYE+++ +I     +  L + ++ V V++  L        ++  +D  +AE 
Sbjct: 327 SEKSSETTNYELDS-TIQEIKKHPALAKTNVVVWVDQNAL--------NKNGVD--MAEF 375

Query: 389 NKIVSAATGI 398
            K +  + G+
Sbjct: 376 TKAIGVSAGL 385


>gi|330445366|ref|ZP_08309018.1| flagellar M-ring protein FliF [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489557|dbj|GAA03515.1| flagellar M-ring protein FliF [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 582

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 89/413 (21%), Positives = 180/413 (43%), Gaps = 32/413 (7%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           R  IL+L+  I V +++ +    ++  P    L    E  ++  I     +  I++++  
Sbjct: 52  RQVILVLSVAICVALIVLVT--MWIKEPEMRPLGT-YETEELIPILDHFDQKKIEYQL-- 106

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           +G++I VP+      ++ L   GL ++ +  G ++  +   FG++  ++      + E +
Sbjct: 107 DGNTIRVPAEEYSAIKLDLTRSGL-NTRTVEGDDILLQDMGFGVSQRLESERLKLSRERQ 165

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVA 196
           +AR I+ IS +  A+V +  P    F +     TA+V +   +       E  +I  +VA
Sbjct: 166 LARAIEQISQVRKAQVLLATPKQSVFVRHNQEATATVFLTLSSGGSLGQQEVDSIVDMVA 225

Query: 197 AAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKALAAFLG 254
            AVP L    VTV D  G+LL++   + +     K   + +  +  +   I+  L   LG
Sbjct: 226 TAVPGLRPTRVTVTDQHGRLLSSGTEDPSATAKRKEYELERKQEQSLREKIDAILMPVLG 285

Query: 255 VDNFRSAVVAELNMDTQQIREI--VYDPDSKVERSIRLSKDAQRSET---------SQPE 303
           + N+ S V  ++ MD   + E    YDP +   RS    +D     T         +QP 
Sbjct: 286 LGNYTSQV--DVAMDFSALEETRKRYDPATAATRSEFTLEDINGGNTVSGIPGALSNQPP 343

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
               + QN+  +           + +  +E   NYE++T           + R +++V V
Sbjct: 344 VDSAIPQNVKDMQSGS----GGADGSVHRESTRNYELDTTISHKRAQTGTIARQTVSVAV 399

Query: 364 NKGRLTEVLGRSADQGKI---DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           +   +T+    + D  ++   ++ +A+I +++    G +  RGD + + S+ F
Sbjct: 400 DYKTITDPA--TGDVTRVPVSEAEIAKIRRLLMGGIGFSEARGDLLEVLSVPF 450


>gi|254993621|ref|ZP_05275811.1| flagellar MS-ring protein [Listeria monocytogenes FSL J2-064]
          Length = 544

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 82/370 (22%), Positives = 168/370 (45%), Gaps = 30/370 (8%)

Query: 42  FVNSPHYD-NLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           ++N+P  +  LY  L  +   +++  L++  +D+ +  +G+ I V   +    R   A  
Sbjct: 33  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91

Query: 101 GLPSSSSNSGYELFDKVNSFGLTS---FMQEITRVRA-LEGEIARTIQSISGIVAARVHI 156
           G+P +  +    L +  +S G +     MQE    +  LE EI ++  +   I +A V +
Sbjct: 92  GIPYTGQDGNDILLN--SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGTT--IDSASVQL 147

Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDST 213
            +P+  S F +   + TA+V ++  N     S +   I+  V+AAVPN+   DV ++D+ 
Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207

Query: 214 GKLL----TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
             ++    T+ E   +     + I  AI   ++ +I   L++   +DNFR      +N D
Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVSVNFD 267

Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
             +     Y  D KV  + +  S D  +   +  ES      ++P+ +++      +   
Sbjct: 268 EIKQNTEHYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTY-T 326

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           ++K  E +NYE+++ +I     +  L + ++ V V++  L        ++  +D  +AE 
Sbjct: 327 SEKSSETTNYELDS-TIQEIKKHPALAKTNVVVWVDQNAL--------NKNGVD--MAEF 375

Query: 389 NKIVSAATGI 398
            K +  + G+
Sbjct: 376 TKAIGVSAGL 385


>gi|89075513|ref|ZP_01161924.1| flagellar M-ring protein [Photobacterium sp. SKA34]
 gi|89048785|gb|EAR54356.1| flagellar M-ring protein [Photobacterium sp. SKA34]
          Length = 582

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 92/420 (21%), Positives = 184/420 (43%), Gaps = 34/420 (8%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           R  IL+L+  I V +++ +    ++  P    L    E  ++  I     +  I +++  
Sbjct: 52  RQVILVLSVAICVALIVLVT--MWIKEPEMRPLG-SYETEELIPILDHFDQKKIAYQL-- 106

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           +G++I VP+      ++ L   GL ++ +  G ++  +   FG++  M+      + E +
Sbjct: 107 DGNTIRVPADEYSAIKLDLTRTGL-NAQTVEGDDILLQDMGFGVSQRMESERLKLSRERQ 165

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVA 196
           +AR I+ IS +  A+V +  P    F +     TA+V +   +       E  +I  +VA
Sbjct: 166 LARAIEQISQVRKAQVLLATPKQSVFVRHNQEATATVFLTLSSGGSLGQQEVDSIVDMVA 225

Query: 197 AAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKALAAFLG 254
            AVP L    VTV D  G+LL++   + +     K   + +  +  +   I+  L   LG
Sbjct: 226 TAVPGLRPTRVTVTDQHGRLLSSGTEDPSTTAKRKEYELERKQEQALREKIDAILMPVLG 285

Query: 255 VDNFRSAVVAELNMDTQQIREI--VYDPDSKVERSIRLSKDAQRSE---------TSQPE 303
           + N+ S V  ++ MD   + E    YDP +   RS    +D              ++QP 
Sbjct: 286 LGNYTSQV--DVAMDFSALEETRKRYDPSTAATRSEFTLEDINGGNQVAGIPGALSNQPP 343

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
               + QN+  +           + +  +E   NYE++T           ++R +++V V
Sbjct: 344 VESAIPQNVKDMQSGT----NGSDGSVHRESTRNYELDTTISHKRAQTGVIDRQTVSVAV 399

Query: 364 NKGRLTEVLGRSADQGKI---DSYLAEINKIVSAATGINSRRGDTITITSMDFL--ENQL 418
           +   +T+   ++ D  ++   ++ +A+I +++    G    RGD + + S+ F   E+QL
Sbjct: 400 DYKTITDP--KTGDVTRVPVSEAEIAKIRRLLMGGIGFLEARGDLLEVLSVPFALPESQL 457


>gi|328467278|gb|EGF38358.1| flagellar MS-ring protein [Listeria monocytogenes 1816]
          Length = 544

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 82/370 (22%), Positives = 168/370 (45%), Gaps = 30/370 (8%)

Query: 42  FVNSPHYD-NLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           ++N+P  +  LY  L  +   +++  L++  +D+ +  +G+ I V   +    R   A  
Sbjct: 27  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 85

Query: 101 GLPSSSSNSGYELFDKVNSFGLTS---FMQEITRVRA-LEGEIARTIQSISGIVAARVHI 156
           G+P +  +    L +  +S G +     MQE    +  LE EI ++  +   I +A V +
Sbjct: 86  GIPYTGQDGNDILLN--SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGTT--IDSASVQL 141

Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDST 213
            +P+  S F +   + TA+V ++  N     S +   I+  V+AAVPN+   DV ++D+ 
Sbjct: 142 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 201

Query: 214 GKLL----TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
             ++    T+ E   +     + I  AI   ++ +I   L++   +DNFR      +N D
Sbjct: 202 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVSVNFD 261

Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
             +     Y  D KV  + +  S D  +   +  ES      ++P+ +++      +   
Sbjct: 262 EIKQNTEHYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTY-T 320

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           ++K  E +NYE+++ +I     +  L + ++ V V++  L        ++  +D  +AE 
Sbjct: 321 SEKSSETTNYELDS-TIQEIKKHPALAKTNVVVWVDQNAL--------NKNGVD--MAEF 369

Query: 389 NKIVSAATGI 398
            K +  + G+
Sbjct: 370 TKAIGVSAGL 379


>gi|226223344|ref|YP_002757451.1| flagellar basal-body M-ring protein FliF [Listeria monocytogenes
           Clip81459]
 gi|225875806|emb|CAS04509.1| Putative flagellar basal-body M-ring protein FliF [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
          Length = 550

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 82/370 (22%), Positives = 168/370 (45%), Gaps = 30/370 (8%)

Query: 42  FVNSPHYD-NLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           ++N+P  +  LY  L  +   +++  L++  +D+ +  +G+ I V   +    R   A  
Sbjct: 33  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91

Query: 101 GLPSSSSNSGYELFDKVNSFGLTS---FMQEITRVRA-LEGEIARTIQSISGIVAARVHI 156
           G+P +  +    L +  +S G +     MQE    +  LE EI ++  +   I +A V +
Sbjct: 92  GIPYTGQDGNDILLN--SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGTT--IDSASVQL 147

Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDST 213
            +P+  S F +   + TA+V ++  N     S +   I+  V+AAVPN+   DV ++D+ 
Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207

Query: 214 GKLL----TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
             ++    T+ E   +     + I  AI   ++ +I   L++   +DNFR      +N D
Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVSVNFD 267

Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
             +     Y  D KV  + +  S D  +   +  ES      ++P+ +++      +   
Sbjct: 268 EIKQNTEHYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTY-T 326

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           ++K  E +NYE+++ +I     +  L + ++ V V++  L        ++  +D  +AE 
Sbjct: 327 SEKSSETTNYELDS-TIQEIKKHPALAKTNVVVWVDQNAL--------NKNGVD--MAEF 375

Query: 389 NKIVSAATGI 398
            K +  + G+
Sbjct: 376 TKAIGVSAGL 385


>gi|332533127|ref|ZP_08408996.1| flagellar M-ring protein FliF [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332037409|gb|EGI73863.1| flagellar M-ring protein FliF [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 571

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 92/422 (21%), Positives = 188/422 (44%), Gaps = 37/422 (8%)

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L    I++++  +G+ +SV  S     ++ +  +GL    + SG ++  +   FG++  +
Sbjct: 88  LDAQKIEYQL--DGNVVSVDESEYQNIKLLMTREGLEQGPA-SGSDIIMQDMGFGVSQRL 144

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAIN 181
           +        E ++ARTI+ ++ I  A+V + +P    F +   +P+A+V++     R+++
Sbjct: 145 ERERLKHGREQQLARTIEELNNITRAKVLLAIPKENVFARREKKPSATVVLTLKRGRSLD 204

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG----KSLSIVQAI 237
               +  +++  ++A+AV  L+   VTV D  G+LL  N   ++ L     K   + +  
Sbjct: 205 ---REEVDSVVDMIASAVQGLEPARVTVTDQNGRLL--NSGSQSSLAARSRKEYDLERKR 259

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV--YDPDSKVERSIR------ 289
           + E    I+  L   +G+ N+ + V  +L+MD   + E    Y+PD    RS        
Sbjct: 260 EQEYLEKIDSILIPVVGLANYTAQV--DLSMDFSSVEETQKRYNPDLPAVRSETTFEENN 317

Query: 290 ---LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346
              L+     + T+QP     +  N+P  + +      +      KE   NYE++T    
Sbjct: 318 IGGLAVGIPGALTNQP----PLNSNIPEDAGQGGAGTATSPTRSHKEATRNYELDTTISH 373

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
               +  + R+S++V V+        G +    +    L+ I +++    G + +RGD +
Sbjct: 374 KRQQSGVIRRISVSVAVDYVPKVGENGETTMAPRSVEALSNIRRLLQGGVGFDMQRGDAL 433

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
            + ++ F+      +  V +   D   +    V+ ALV +V   L+  +    L+RL   
Sbjct: 434 EVVTVPFVREATNLAIEVPLWEQDWFMKIARLVLGALVIIV---LIMAVVKPMLKRLIYP 490

Query: 467 DD 468
           DD
Sbjct: 491 DD 492


>gi|47091676|ref|ZP_00229472.1| flagellar M-ring protein FliF [Listeria monocytogenes str. 4b
           H7858]
 gi|254824007|ref|ZP_05229008.1| flagellar M-ring protein FliF [Listeria monocytogenes FSL J1-194]
 gi|254932007|ref|ZP_05265366.1| flagellar M-ring protein FliF [Listeria monocytogenes HPB2262]
 gi|255521223|ref|ZP_05388460.1| flagellar MS-ring protein [Listeria monocytogenes FSL J1-175]
 gi|300764526|ref|ZP_07074519.1| flagellar M-ring protein FliF [Listeria monocytogenes FSL N1-017]
 gi|47019995|gb|EAL10732.1| flagellar M-ring protein FliF [Listeria monocytogenes str. 4b
           H7858]
 gi|293583558|gb|EFF95590.1| flagellar M-ring protein FliF [Listeria monocytogenes HPB2262]
 gi|293593234|gb|EFG00995.1| flagellar M-ring protein FliF [Listeria monocytogenes FSL J1-194]
 gi|300514880|gb|EFK41934.1| flagellar M-ring protein FliF [Listeria monocytogenes FSL N1-017]
 gi|328475674|gb|EGF46423.1| flagellar MS-ring protein [Listeria monocytogenes 220]
 gi|332311137|gb|EGJ24232.1| Flagellar M-ring protein FliF [Listeria monocytogenes str. Scott A]
          Length = 550

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 82/370 (22%), Positives = 168/370 (45%), Gaps = 30/370 (8%)

Query: 42  FVNSPHYD-NLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           ++N+P  +  LY  L  +   +++  L++  +D+ +  +G+ I V   +    R   A  
Sbjct: 33  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91

Query: 101 GLPSSSSNSGYELFDKVNSFGLTS---FMQEITRVRA-LEGEIARTIQSISGIVAARVHI 156
           G+P +  +    L +  +S G +     MQE    +  LE EI ++  +   I +A V +
Sbjct: 92  GIPYTGQDGNDILLN--SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGTT--IDSASVQL 147

Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDST 213
            +P+  S F +   + TA+V ++  N     S +   I+  V+AAVPN+   DV ++D+ 
Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207

Query: 214 GKLL----TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
             ++    T+ E   +     + I  AI   ++ +I   L++   +DNFR      +N D
Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVSVNFD 267

Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
             +     Y  D KV  + +  S D  +   +  ES      ++P+ +++      +   
Sbjct: 268 EIKQNTEHYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTY-T 326

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           ++K  E +NYE+++ +I     +  L + ++ V V++  L        ++  +D  +AE 
Sbjct: 327 SEKSSETTNYELDS-TIQEIKKHPALAKTNVVVWVDQNAL--------NKNGVD--MAEF 375

Query: 389 NKIVSAATGI 398
            K +  + G+
Sbjct: 376 TKAIGVSAGL 385


>gi|255025681|ref|ZP_05297667.1| flagellar MS-ring protein [Listeria monocytogenes FSL J2-003]
          Length = 550

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 82/370 (22%), Positives = 168/370 (45%), Gaps = 30/370 (8%)

Query: 42  FVNSPHYD-NLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           ++N+P  +  LY  L  +   +++  L++  +D+ +  +G+ I V   +    R   A  
Sbjct: 33  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91

Query: 101 GLPSSSSNSGYELFDKVNSFGLTS---FMQEITRVRA-LEGEIARTIQSISGIVAARVHI 156
           G+P +  +    L +  +S G +     MQE    +  LE EI ++  +   I +A V +
Sbjct: 92  GIPYTGQDGNDILLN--SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGTT--IDSASVQL 147

Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDST 213
            +P+  S F +   + TA+V ++  N     S +   I+  V+AAVPN+   DV ++D+ 
Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207

Query: 214 GKLL----TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
             ++    T+ E   +     + I  AI   ++ +I   L++   +DNFR      +N D
Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVAVNFD 267

Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
             +     Y  D KV  + +  S D  +   +  ES      ++P+ +++      +   
Sbjct: 268 EIKQNTEHYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTY-T 326

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           ++K  E +NYE+++ +I     +  L + ++ V V++  L        ++  +D  +AE 
Sbjct: 327 SEKSSETTNYELDS-TIQEIKKHPALAKTNVVVWVDQNAL--------NKNGVD--MAEF 375

Query: 389 NKIVSAATGI 398
            K +  + G+
Sbjct: 376 TKAIGVSAGL 385


>gi|313610108|gb|EFR85433.1| flagellar M-ring protein FliF [Listeria monocytogenes FSL F2-208]
          Length = 550

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 82/370 (22%), Positives = 168/370 (45%), Gaps = 30/370 (8%)

Query: 42  FVNSPHYD-NLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           ++N+P  +  LY  L  +   +++  L++  +D+ +  +G+ I V   +    R   A  
Sbjct: 33  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91

Query: 101 GLPSSSSNSGYELFDKVNSFGLTS---FMQEITRVRA-LEGEIARTIQSISGIVAARVHI 156
           G+P +  +    L +  +S G +     MQE    +  LE EI ++  +   I +A V +
Sbjct: 92  GIPYTGQDGNDILLN--SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGTT--IDSASVQL 147

Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDST 213
            +P+  S F +   + TA+V ++  N     S +   I+  V+AAVPN+   DV ++D+ 
Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207

Query: 214 GKLL----TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
             ++    T+ E   +     + I  AI   ++ +I   L++   +DNFR      +N D
Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVTVNFD 267

Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
             +     Y  D KV  + +  S D  +   +  ES      ++P+ +++      +   
Sbjct: 268 EIKQNTEHYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTY-T 326

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           ++K  E +NYE+++ +I     +  L + ++ V V++  L        ++  +D  +AE 
Sbjct: 327 SEKSSETTNYELDS-TIQEIKKHPALAKTNVVVWVDQNAL--------NKNGVD--MAEF 375

Query: 389 NKIVSAATGI 398
            K +  + G+
Sbjct: 376 TKAIGVSAGL 385


>gi|16802755|ref|NP_464240.1| flagellar MS-ring protein [Listeria monocytogenes EGD-e]
 gi|47095279|ref|ZP_00232890.1| flagellar M-ring protein FliF [Listeria monocytogenes str. 1/2a
           F6854]
 gi|224498795|ref|ZP_03667144.1| flagellar MS-ring protein [Listeria monocytogenes Finland 1988]
 gi|224501982|ref|ZP_03670289.1| flagellar MS-ring protein [Listeria monocytogenes FSL R2-561]
 gi|254829370|ref|ZP_05234057.1| flagellar MS-ring protein [Listeria monocytogenes FSL N3-165]
 gi|254830296|ref|ZP_05234951.1| flagellar MS-ring protein [Listeria monocytogenes 10403S]
 gi|254900051|ref|ZP_05259975.1| flagellar MS-ring protein [Listeria monocytogenes J0161]
 gi|254911396|ref|ZP_05261408.1| flagellar MS-ring protein [Listeria monocytogenes J2818]
 gi|254935723|ref|ZP_05267420.1| flagellar MS-ring protein [Listeria monocytogenes F6900]
 gi|255028428|ref|ZP_05300379.1| flagellar MS-ring protein [Listeria monocytogenes LO28]
 gi|284801043|ref|YP_003412908.1| flagellar MS-ring protein [Listeria monocytogenes 08-5578]
 gi|284994185|ref|YP_003415953.1| flagellar MS-ring protein [Listeria monocytogenes 08-5923]
 gi|16410102|emb|CAC98791.1| lmo0713 [Listeria monocytogenes EGD-e]
 gi|47016350|gb|EAL07272.1| flagellar M-ring protein FliF [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258601784|gb|EEW15109.1| flagellar MS-ring protein [Listeria monocytogenes FSL N3-165]
 gi|258608307|gb|EEW20915.1| flagellar MS-ring protein [Listeria monocytogenes F6900]
 gi|284056605|gb|ADB67546.1| flagellar MS-ring protein [Listeria monocytogenes 08-5578]
 gi|284059652|gb|ADB70591.1| flagellar MS-ring protein [Listeria monocytogenes 08-5923]
 gi|293589334|gb|EFF97668.1| flagellar MS-ring protein [Listeria monocytogenes J2818]
          Length = 550

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 82/370 (22%), Positives = 168/370 (45%), Gaps = 30/370 (8%)

Query: 42  FVNSPHYD-NLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           ++N+P  +  LY  L  +   +++  L++  +D+ +  +G+ I V   +    R   A  
Sbjct: 33  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91

Query: 101 GLPSSSSNSGYELFDKVNSFGLTS---FMQEITRVRA-LEGEIARTIQSISGIVAARVHI 156
           G+P +  +    L +  +S G +     MQE    +  LE EI ++  +   I +A V +
Sbjct: 92  GIPYTGQDGNDILLN--SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGTT--IDSASVQL 147

Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDST 213
            +P+  S F +   + TA+V ++  N     S +   I+  V+AAVPN+   DV ++D+ 
Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207

Query: 214 GKLL----TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
             ++    T+ E   +     + I  AI   ++ +I   L++   +DNFR      +N D
Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVAVNFD 267

Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
             +     Y  D KV  + +  S D  +   +  ES      ++P+ +++      +   
Sbjct: 268 EIKQNTEHYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTY-T 326

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           ++K  E +NYE+++ +I     +  L + ++ V V++  L        ++  +D  +AE 
Sbjct: 327 SEKSSETTNYELDS-TIQEIKKHPALAKTNVVVWVDQNAL--------NKNGVD--MAEF 375

Query: 389 NKIVSAATGI 398
            K +  + G+
Sbjct: 376 TKAIGVSAGL 385


>gi|46906964|ref|YP_013353.1| flagellar MS-ring protein [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|46880230|gb|AAT03530.1| flagellar M-ring protein FliF [Listeria monocytogenes serotype 4b
           str. F2365]
          Length = 550

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 82/370 (22%), Positives = 168/370 (45%), Gaps = 30/370 (8%)

Query: 42  FVNSPHYD-NLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           ++N+P  +  LY  L  +   +++  L++  +D+ +  +G+ I V   +    R   A  
Sbjct: 33  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91

Query: 101 GLPSSSSNSGYELFDKVNSFGLTS---FMQEITRVRA-LEGEIARTIQSISGIVAARVHI 156
           G+P +  +    L +  +S G +     MQE    +  LE EI ++  +   I +A V +
Sbjct: 92  GIPYTGQDGNDILLN--SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGTT--IDSASVQL 147

Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDST 213
            +P+  S F +   + TA+V ++  N     S +   I+  V+AAVPN+   DV ++D+ 
Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207

Query: 214 GKLL----TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
             ++    T+ E   +     + I  AI   ++ +I   L++   +DNFR      +N D
Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVSVNFD 267

Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
             +     Y  D KV  + +  S D  +   +  ES      ++P+ +++      +   
Sbjct: 268 EIKQNTEHYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTY-T 326

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           ++K  E +NYE+++ +I     +  L + ++ V V++  L        ++  +D  +AE 
Sbjct: 327 SEKSSETTNYELDS-TIQEIKKHPALAKTNVVVWVDQNAL--------NKNGVD--MAEF 375

Query: 389 NKIVSAATGI 398
            K +  + G+
Sbjct: 376 TKAIGVSAGL 385


>gi|217965189|ref|YP_002350867.1| flagellar M-ring protein FliF [Listeria monocytogenes HCC23]
 gi|217334459|gb|ACK40253.1| flagellar M-ring protein FliF [Listeria monocytogenes HCC23]
 gi|307570252|emb|CAR83431.1| flagellar M-ring protein [Listeria monocytogenes L99]
          Length = 550

 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 84/371 (22%), Positives = 168/371 (45%), Gaps = 32/371 (8%)

Query: 42  FVNSPHYD-NLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           ++N+P  +  LY  L  +   +++  L++  +D+ +  +G+ I V   +    R   A  
Sbjct: 33  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91

Query: 101 GLPSSSSNSGYELFDKVNSFGLTS---FMQEITRVRA-LEGEIARTIQSISGIV-AARVH 155
           G+P +  +    L +  +S G +     MQE    +  LE EI   +QS    V +A V 
Sbjct: 92  GIPYTGQDGNDILLN--SSLGASEEDKKMQEKVGTKVNLEKEI---VQSYGTTVDSASVQ 146

Query: 156 IVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDS 212
           + +P+  S F +   + TA+V ++  N     S +   I+  V+AAVPN+   DV ++D+
Sbjct: 147 LTLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDT 206

Query: 213 TGKLL----TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM 268
              ++    T+ E   +     + I  AI   ++ +I   L++   +DNFR      +N 
Sbjct: 207 KNGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVTVNF 266

Query: 269 DTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE 327
           D  +     Y  D KV  + +  S D  +   +  ES      ++P+ +++      +  
Sbjct: 267 DEIKQNTEHYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTY- 325

Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE 387
            ++K  E +NYE+++ +I     +  L + ++ V V++  L        ++  +D  +AE
Sbjct: 326 TSEKSSETTNYELDS-TIQEIKKHPALAKTNVVVWVDQNAL--------NKNGVD--MAE 374

Query: 388 INKIVSAATGI 398
             K +  + G+
Sbjct: 375 FTKAIGVSAGL 385


>gi|290894011|ref|ZP_06556986.1| flagellar M-ring protein FliF [Listeria monocytogenes FSL J2-071]
 gi|290556457|gb|EFD89996.1| flagellar M-ring protein FliF [Listeria monocytogenes FSL J2-071]
          Length = 550

 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 84/371 (22%), Positives = 168/371 (45%), Gaps = 32/371 (8%)

Query: 42  FVNSPHYD-NLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           ++N+P  +  LY  L  +   +++  L++  +D+ +  +G+ I V   +    R   A  
Sbjct: 33  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91

Query: 101 GLPSSSSNSGYELFDKVNSFGLTS---FMQEITRVRA-LEGEIARTIQSISGIV-AARVH 155
           G+P +  +    L +  +S G +     MQE    +  LE EI   +QS    V +A V 
Sbjct: 92  GIPYTGQDGNDILLN--SSLGASEEDKKMQEKVGTKVNLEKEI---VQSYGTTVDSASVQ 146

Query: 156 IVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDS 212
           + +P+  S F +   + TA+V ++  N     S +   I+  V+AAVPN+   DV ++D+
Sbjct: 147 LTLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDT 206

Query: 213 TGKLL----TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM 268
              ++    T+ E   +     + I  AI   ++ +I   L++   +DNFR      +N 
Sbjct: 207 KNGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVTVNF 266

Query: 269 DTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE 327
           D  +     Y  D KV  + +  S D  +   +  ES      ++P+ +++      +  
Sbjct: 267 DEIKQNTEHYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTY- 325

Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE 387
            ++K  E +NYE+++ +I     +  L + ++ V V++  L        ++  +D  +AE
Sbjct: 326 TSEKSSETTNYELDS-TIQEIKKHPALAKTNVVVWVDQNAL--------NKNGVD--MAE 374

Query: 388 INKIVSAATGI 398
             K +  + G+
Sbjct: 375 FTKAIGVSAGL 385


>gi|54308116|ref|YP_129136.1| flagellar MS-ring protein [Photobacterium profundum SS9]
 gi|46912542|emb|CAG19334.1| Putative polar flagellar M-ring protein FliF [Photobacterium
           profundum SS9]
          Length = 580

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 83/414 (20%), Positives = 182/414 (43%), Gaps = 34/414 (8%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           R  IL+L+  I V +++ M    ++  P    L    + +++  I     +  + + +  
Sbjct: 51  RQVILVLSVSICVALIVMMV--MWIKEPEMRPLGT-YDTAELISILDHFDQTKVQYEL-- 105

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           +G++I VP+      ++ L   GL ++S   G ++  +   FG++  ++      + E +
Sbjct: 106 DGNTIRVPADDFSSIQLGLTRAGL-NNSVAEGDDILLQDMGFGVSQRLEGERLKLSRERQ 164

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-AINPSV-YKSAEAIRHLVA 196
           +AR I+ I  +  A+V + +P    F +     +A+V +    N S+  +  ++I  +VA
Sbjct: 165 LARAIEQIRQVRKAQVLLALPKQSVFVRHNQEASATVFLTLGTNGSLKQQEVDSIVDMVA 224

Query: 197 AAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKALAAFLG 254
           +AVP+L    VTV D  G+LL++   + +     K   + +  +  +   I+  L   LG
Sbjct: 225 SAVPSLKPNRVTVTDQHGRLLSSGTEDPSATAQRKEYELERKQEQGMREKIDSILIPILG 284

Query: 255 VDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------TSQPESA 305
             N+ S V   ++   Q+     +DP +   RS    ++              ++QP + 
Sbjct: 285 FGNYTSQVDVTMDFSAQEETRKRFDPSTPSTRSEYTVENYNNGNIVAGIPGALSNQPPAD 344

Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365
            ++ Q++  +   +     S      +E   N+E++T           + R +++V V+ 
Sbjct: 345 ASIPQDIADMQSGR----GSSNGASHREATRNFELDTVISHRRAQTGTVSRQTVSVAVDY 400

Query: 366 GRLTEVLGRSADQGKI------DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
             LT     + + G++      ++ L +I +++    G +  RGD + + +M F
Sbjct: 401 KSLT-----NPETGEVTRVPVSEAELLKIRRLLMGGVGFSEARGDMLEVIAMPF 449


>gi|326791543|ref|YP_004309364.1| flagellar M-ring protein FliF [Clostridium lentocellum DSM 5427]
 gi|326542307|gb|ADZ84166.1| flagellar M-ring protein FliF [Clostridium lentocellum DSM 5427]
          Length = 529

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 116/229 (50%), Gaps = 12/229 (5%)

Query: 30  LVPIMLFMAARFFVNSPHYDNLYVK-LEVSDVNRISVALSEANIDFRISDNGSSISVPSS 88
           ++ +++ + A   +  P   NL+ + L+   + +++  L+E  I +++ ++ ++I V  +
Sbjct: 31  VLALIIAITAVVLLTRPKMKNLFSENLDSKSIGQVATVLNENGIKYKLINDSTNIQVQEN 90

Query: 89  MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT--RVRALEGEIARTIQSI 146
              +A ++ A   +P S        FD+V +  +++   E+T       + ++ RT++S+
Sbjct: 91  QYEQALMYTAMSDVPESGMT-----FDQVINNTMSTTQTEMTAKNNEYKKQQLERTLRSM 145

Query: 147 SGIVAARVHIVMPDM-GSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMG 205
            GI +ARV +V+P+   ++ +      AS+ +        K  E I   ++++V NLD  
Sbjct: 146 EGIESARVELVIPEQKNAYLQSQVESRASIFLTLSKTLTTKQCEGIATYISSSVANLDKK 205

Query: 206 DVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLG 254
           ++ V+DS G  L +   E + LG  L+  Q I+   E ++ + ++  LG
Sbjct: 206 NIVVIDSQGNTLYSGS-EESQLG--LNKQQEIKLLAEQDVTQKVSNLLG 251


>gi|323174683|gb|EFZ60303.1| flagellar M-ring protein FliF [Escherichia coli LT-68]
          Length = 380

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 109/249 (43%), Gaps = 34/249 (13%)

Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQAIQHEIEMNINKA 248
           AI HLV++AV  L  G+VT++D  G LLT  N   R++    L     ++  I+  I   
Sbjct: 18  AIVHLVSSAVAGLPPGNVTLVDQGGHLLTQFNTSGRDLNDAQLKYASDVEGRIQRRIEAI 77

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESA 305
           L+  +G  N  + V A+L+  +++  E  Y P+    ++   S+    SE S    P   
Sbjct: 78  LSPIVGKGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGGV 137

Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQ-----------------SNYEINTKSIATT 348
                N P  ++   P+     N + +++Q                 SNYE++     T 
Sbjct: 138 PGALSNQPAPAN-NAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTK 196

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI----DSYLAEINKIVSAATGINSRRGD 404
            +   ++RLS+AVVVN   L +        GK     +  + +I  +   A G + +RGD
Sbjct: 197 MNVGDVQRLSVAVVVNYKTLPD--------GKPLPLSNEQMKQIEDLTREAMGFSEKRGD 248

Query: 405 TITITSMDF 413
           ++ + +  F
Sbjct: 249 SLNVVNSPF 257


>gi|260775676|ref|ZP_05884572.1| type III secretion bridge between inner and outermembrane
           lipoprotein (yscJ,HrcJ,EscJ PscJ) [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260608092|gb|EEX34261.1| type III secretion bridge between inner and outermembrane
           lipoprotein (yscJ,HrcJ,EscJ PscJ) [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 268

 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 85/150 (56%), Gaps = 10/150 (6%)

Query: 59  DVNRISVALSEANI--DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
           D N +  ALS+ NI  + R+  NG +I V S+ +GKA   L+  GLP +  +S   +F  
Sbjct: 39  DANAVLSALSDKNISAEKRMDKNGVTILVNSNQMGKALRVLSIAGLPKAPHDSLGSMFP- 97

Query: 117 VNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
            N   +++ ++E  R + AL  E+  T+  I G+V ARVH+V+P+  +  +  +  +ASV
Sbjct: 98  -NDGVISTPLEEQARYIHALSQELEYTLSEIDGVVLARVHVVLPEKIAPGEPISPASASV 156

Query: 176 MIR---AINPSVYKSAEAIRHLVAAAVPNL 202
            I+    ++P V K+   I+ LVA ++P L
Sbjct: 157 FIKHQTTLDPDVIKN--RIQRLVAGSIPGL 184


>gi|328947994|ref|YP_004365331.1| flagellar M-ring protein FliF [Treponema succinifaciens DSM 2489]
 gi|328448318|gb|AEB14034.1| flagellar M-ring protein FliF [Treponema succinifaciens DSM 2489]
          Length = 568

 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 98/386 (25%), Positives = 173/386 (44%), Gaps = 66/386 (17%)

Query: 77  SDNGSSISVPSSMVGKA-RIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135
           SDN   ISV +S + K  R  L A+G   SS ++ Y LFD V  +  T F  ++   RA 
Sbjct: 82  SDN--YISVENSDIAKKYRSRLIAEGYAPSSLDA-YSLFD-VTRWSRTDFDDKVNWQRAT 137

Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI-NPSVYKSAEAIR-- 192
           E  + + ++S+ GI  A V++V+PD   F +     +AS+++ A  N  V      IR  
Sbjct: 138 ETALKQQLESLDGIQRAEVNLVLPDEALFTENQNPTSASIVLYAKGNSDVLTDKRKIRGI 197

Query: 193 -HLVAAAVPNLDMGDVTVLDSTGKL-------------LTANEMERNILGKSLSIVQAIQ 238
            +L+ A V  L   ++ + D    +             ++  E +R ++ K  +    + 
Sbjct: 198 QNLIKACVEGLRDENIVINDGASNVQINDFEGMAESDRISNIEKQRKLILKQETTYTGL- 256

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVA-ELNMDTQQIREIVY--------DP-----DSKV 284
                 + KAL      D  R A +  ++NM  ++     Y        +P     DS++
Sbjct: 257 ------VLKALKGTFSDDRVRVANIKIDMNMSERKTTSKEYTGITIRPDNPNTPYDDSEI 310

Query: 285 ERSIRLSKDA-QRSETS---QPESAVTVE-QNMPHVSDRKVPLPRSLENTDKKEEQSNYE 339
             S+ LS++   +S T     PE    VE QN P  SD    + +S E   K+    NY 
Sbjct: 311 VNSLTLSEETVNKSFTGTGYNPEGPAGVEGQNPPVYSDMSNVVGKSTEEGVKR----NYA 366

Query: 340 INTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA----DQGKID--------SYLAE 387
           +N K+++    + +++R++++V ++ G+  +V   +     + G +           L  
Sbjct: 367 LNEKNVSEIT-SPQIDRITVSVNID-GQWRKVYDENNRPILENGHLKREYIPITPEQLVN 424

Query: 388 INKIVSAATGINSRRGDTITITSMDF 413
             K+V  A G N  RGD++T+T++ F
Sbjct: 425 TTKLVQDAVGYNKSRGDSVTVTNIPF 450


>gi|289678988|ref|ZP_06499878.1| flagellar MS-ring protein [Pseudomonas syringae pv. syringae FF5]
          Length = 395

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 96/416 (23%), Positives = 166/416 (39%), Gaps = 90/416 (21%)

Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINK 247
           AI +LVA +VP L    +TV+D  G LL+  A   E  + GK     + ++  +   +  
Sbjct: 9   AIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGMLTQRVQN 68

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE--------- 298
            L   LG D +++ V A ++    +     ++PD    RS + S + QRS          
Sbjct: 69  ILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQ-SVNEQRSSSSSSGGVPG 127

Query: 299 --TSQPESAVT----------------------VEQNMPHVSDRKVPLPRSLENTDKKEE 334
             ++QP    T                      ++ N   + D     P        K  
Sbjct: 128 ALSNQPPGPATAPQTAGAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPADKRV 187

Query: 335 QS--NYEINTKSIATTHDNYKLERLSIAVVVN--------KGRLTEVLGRSADQGKIDSY 384
           QS  N+E++     T     +L RLS+AVVV+         G ++     +AD       
Sbjct: 188 QSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVSRAPWSAAD------- 240

Query: 385 LAEINKIVSAATGINSRRGDTITITSMDF-------LENQLFNSGTVQVSFMDILSRHFA 437
           LA   ++V  A G ++ RGD++++ ++ F       L    F S   Q  F DI+ +   
Sbjct: 241 LARFTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYS---QPWFWDIVKQA-- 295

Query: 438 TVINALVFLVGTLLVTFLGLHALRR-LHNIDDAKKGEV---GGKSILSPPPISSAVTTGL 493
                    VG + +  L    LR  L+NI + K+ E+   GG + L           G 
Sbjct: 296 ---------VGVIFILILVFGVLRPVLNNITNGKRKELAGFGGDAELG----GMGGLDGE 342

Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549
           + ND ++L    Q I      L S    Y ++ + ++   ++  +  R A+++++W
Sbjct: 343 LSNDRVSL-GGPQSIL-----LPSPTEGYDAQLNAIK--SLVAEDPGRVAQVVKEW 390


>gi|326204626|ref|ZP_08194482.1| flagellar M-ring protein FliF [Clostridium papyrosolvens DSM 2782]
 gi|325985193|gb|EGD46033.1| flagellar M-ring protein FliF [Clostridium papyrosolvens DSM 2782]
          Length = 524

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 124/270 (45%), Gaps = 23/270 (8%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +L  LL F+K      +TRI I+  +++V + + +   F +  P Y  +       +V  
Sbjct: 8   LLKPLLDFWKGLDKSQKTRIFIITGIVVVSVSIGL---FLITRPTYTTVINNASTEEVAA 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +   L E  I ++++++ S I V      +A   LA     +  S +G    D +++  +
Sbjct: 65  MQKILKEKGISYKLTEDKSGIIVNEKDSDEAHFELA-----TGYSKNGLTFADALSNIKI 119

Query: 123 TSFMQEITRVRAL--EGEIARTIQSISGIVAARVHIVMPD----MGSFRKIGARPTASVM 176
            +   +   +     E +IAR +     I  A V IV P+    +       A+  ASV+
Sbjct: 120 NTTESDKKHIWQQLDESDIARQLMHFQNIENADVTIVRPEKTLLIDDNNSKDAK--ASVV 177

Query: 177 IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSI 233
           I   +    K AE+I  +VA++V  LD  +VTV+D+ G +L   + + +E+        +
Sbjct: 178 ITPKDEISAKQAESIVKIVASSVEGLDPKNVTVVDNKGNVLNTDSGDGIEKT--STQYDM 235

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVV 263
            +  ++++E N+ + L   L  D+F +A V
Sbjct: 236 KKKYKNDLEKNVKEVLVGQL--DSFDTAKV 263


>gi|171319020|ref|ZP_02908147.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia ambifaria MEX-5]
 gi|171095775|gb|EDT40728.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia ambifaria MEX-5]
          Length = 264

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 7/164 (4%)

Query: 51  LYVKLEVSDVNRISVALSEANI----DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
           L+ ++   D N +   L  A +    D R +D G  +SV S+ V  A   L++ GLP   
Sbjct: 19  LFDQINERDANEMLSVLGRAGVAAEKDQRSAD-GWRLSVASADVSVALEILSSAGLPRER 77

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             S  ELF K      T   + +  V A+  E++RTI +I G++ ARVH+ +P      +
Sbjct: 78  YKSIGELFPKEGLIS-TPVEEHMRSVYAISQELSRTISNIDGVITARVHLNIPRREPLLR 136

Query: 167 IGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209
           +   PTASV+++     S+  +  AI+ LV  A+ +LD  +VTV
Sbjct: 137 VQQTPTASVLVKYRAEVSMQPNTLAIKDLVVGAIKDLDRANVTV 180


>gi|71281873|ref|YP_268244.1| flagellar MS-ring protein [Colwellia psychrerythraea 34H]
 gi|71147613|gb|AAZ28086.1| flagellar M-ring protein FliF [Colwellia psychrerythraea 34H]
          Length = 563

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 122/273 (44%), Gaps = 15/273 (5%)

Query: 12  KSG--TSLGRTRILILASVILVPIMLFMAARFFV---NSPHYDNLYVKLEVSDVNRISVA 66
           KSG   SLG   IL   ++++   +    A F +   N P Y  +  KL    +      
Sbjct: 15  KSGFAASLGSVDILRQVTIVVALAICLAIAVFVIMLANEPEY-RVISKLPTKQLITTMDF 73

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L    ++++  +N  +ISVP+      ++ LA +GL    S  G ++  K   FG++  +
Sbjct: 74  LDANQVEYQQENN--TISVPADEYQNVKLLLAREGLTDEPSQ-GEDILMKDMGFGVSQRL 130

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
           +        E +IA+TI+ +  I  A+V + +P    F +    P+A+V++      +  
Sbjct: 131 ERERLKFGREQQIAKTIEQLKSISRAKVLLAIPRENIFARREKNPSATVVLTMQRGKILS 190

Query: 187 SAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIE 242
             E  A+  +VA+AV  L    VTV D  G+LL +   +   +   K   I Q  + E  
Sbjct: 191 EEEVDAVVDIVASAVQGLTPNRVTVTDQNGRLLNSGSQDSISSRSRKEFEIEQKREQEYM 250

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
             I+  L   +G+ N+ + V  ++ MD   + E
Sbjct: 251 EKIDSILIPVVGLGNYTAQV--DITMDFTNVEE 281


>gi|207111036|ref|ZP_03245198.1| flagellar MS-ring protein [Helicobacter pylori HPKX_438_CA4C1]
          Length = 69

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 47/69 (68%), Gaps = 2/69 (2%)

Query: 82  SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
           +I +P   V + RI LA+QG+P +S   G+E+FD    FG T F Q I  +RA+EGE++R
Sbjct: 2   TILIPKDKVYEERITLASQGIPKTS-KVGFEIFD-TKDFGATDFDQNIKLIRAIEGELSR 59

Query: 142 TIQSISGIV 150
           TI+S++ I+
Sbjct: 60  TIESLNPIL 68


>gi|149926067|ref|ZP_01914330.1| putative type III secretion protein [Limnobacter sp. MED105]
 gi|149825355|gb|EDM84566.1| putative type III secretion protein [Limnobacter sp. MED105]
          Length = 265

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 86/163 (52%), Gaps = 7/163 (4%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSS 106
             L+  L   + N I  +L EA I    S    G  ISVP  M   A   L +QGLP + 
Sbjct: 28  SQLFSGLSQEEGNEIYSSLLEAGIPVEKSSGKEGVIISVPKQMSSDALRILQSQGLPRAK 87

Query: 107 SNSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
             S  E+F K +   ++S ++E  R + AL  E+  T+ S+ G+++ARVHIV+P+  +  
Sbjct: 88  KTSMGEVFKKESM--ISSPLEERARYLYALSQELEETLMSMDGVLSARVHIVLPERANPG 145

Query: 166 KIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDV 207
           ++ +  +A+V ++  N S + +    +R L+  ++P +  G+V
Sbjct: 146 EVLSPSSAAVFVKYENGSSFPAYVPRVRELIFKSIPGIT-GEV 187


>gi|220929468|ref|YP_002506377.1| flagellar M-ring protein FliF [Clostridium cellulolyticum H10]
 gi|219999796|gb|ACL76397.1| flagellar M-ring protein FliF [Clostridium cellulolyticum H10]
          Length = 523

 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 125/268 (46%), Gaps = 20/268 (7%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +L  LL F+K      +TRI I+  V++V + + +   F +  P Y  +      +DV  
Sbjct: 8   LLKPLLDFWKGLDKSQKTRIFIITGVVVVSVGIGL---FLITRPTYTTVISNASSADVAA 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +   L E  I ++++D+ S I V      +A   L      S+ S SG+   D +++  +
Sbjct: 65  MQKILKEKGISYKLTDDKSGIIVNEKDSDEAHFEL------STGSKSGFTFADALSNLKI 118

Query: 123 TSFMQEITRVRAL--EGEIARTIQSISGIVAARVHIVMPD----MGSFRKIGARPTASVM 176
            +   +   +     E +IAR ++    I  A V IV P+    +       A+  ASV+
Sbjct: 119 NTTESDKKHIWQQLDESDIARQLKLFQNIEDANVTIVRPEKTLLIDDSNSKDAK--ASVV 176

Query: 177 IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQ 235
           I   +    K AE+I  LVA++V  LD  +VTV+D+ G +L  + E   +       + +
Sbjct: 177 ITPKDEISAKQAESIVKLVASSVEGLDPKNVTVVDNKGNILNIDSESGMDKTSTQYDMKK 236

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVV 263
             ++++E N+ + L   L  D+F +A V
Sbjct: 237 KYKNDLERNLREVLVDQL--DSFDTAKV 262


>gi|330975997|gb|EGH76063.1| flagellar MS-ring protein [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 153

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 48/97 (49%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  LY  L   D  +I   L+ ANI++ +  N  ++ V S  V +ARI LA  
Sbjct: 57  LWSQQPDYRPLYGSLAGMDSKQIMDTLTAANINYTVEPNSGALLVKSDDVQRARIQLAQA 116

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137
           G   + +N G+E+ DK    G + FM+     R LEG
Sbjct: 117 GGVQNDANIGFEILDKDQGLGTSQFMEATRYRRGLEG 153


>gi|84502358|ref|ZP_01000494.1| flagellar M-ring protein [Oceanicola batsensis HTCC2597]
 gi|84389170|gb|EAQ01967.1| flagellar M-ring protein [Oceanicola batsensis HTCC2597]
          Length = 246

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 67/130 (51%)

Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINK 390
           K +E  NYEI      T  +  +++R+S+AV+VN     +  G  A + + +  L  +N+
Sbjct: 1   KTDEVVNYEIGNTQSETVREPGEIQRISVAVLVNGIYNIQDNGEVAYEERSEEELQRLNQ 60

Query: 391 IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL 450
           +V AA G + +RGD++++ S+ F++  +     V  SF+ IL  +   ++ A+  L    
Sbjct: 61  LVQAAIGFDEQRGDSVSVDSLRFMDYSMDVGEPVSTSFVQILKDNMMAILRAVFALAVIA 120

Query: 451 LVTFLGLHAL 460
            +   G+  L
Sbjct: 121 AILVFGVRPL 130


>gi|23011692|ref|ZP_00051978.1| COG1766: Flagellar biosynthesis/type III secretory pathway
           lipoprotein [Magnetospirillum magnetotacticum MS-1]
          Length = 285

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 81/155 (52%), Gaps = 3/155 (1%)

Query: 262 VVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVP 321
           V AEL+++  + R   +DP+S+V RS +    ++ S T   E  V+V   +P  +  +  
Sbjct: 3   VAAELDLNRVESRSESFDPESRVVRSTQTR--SENSLTGGAEGQVSVGNELPGANQNQAQ 60

Query: 322 LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI 381
             +  +++ K EE +NYEI+  +   T +  +L RLS+AV+V+        G+   Q + 
Sbjct: 61  PQQK-DSSQKNEETTNYEISRVTKVETLEGGRLRRLSVAVLVDGVYAPGADGKPVYQPRP 119

Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           D+ +  I  +V  A G +  RGD + + ++ F E+
Sbjct: 120 DAEIERIAALVRTAVGYDKGRGDQVEVVNLRFAES 154


>gi|229172393|ref|ZP_04299952.1| Flagellar M-ring protein fliF [Bacillus cereus MM3]
 gi|228610864|gb|EEK68127.1| Flagellar M-ring protein fliF [Bacillus cereus MM3]
          Length = 524

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 79/373 (21%), Positives = 171/373 (45%), Gaps = 35/373 (9%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           SL     L++ + +L   ++  A  +F     Y  +Y  L  +D   I+  LS+  +D++
Sbjct: 10  SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDTDKQEITAELSKLGVDYQ 67

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132
           ++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   +++ ++   
Sbjct: 68  LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124

Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189
            + LE +I R   ++     A V I +P+  + F +  A+ TA++ +      +  + + 
Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181

Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243
             I+ +++AAVP +   +V+V+DS   +++     A+    +   K + + Q I+ +++ 
Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEVEMQQQIEGKLKQ 241

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           +I+  L      + ++      +N D     E+    +   ++ +  SK  Q   ++  E
Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355
            A T +Q     ++ +VP   +  N + K         +  NYEI+ K++ T   + +L 
Sbjct: 297 GAET-KQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEID-KTVETIKKHPELT 354

Query: 356 RLSIAVVVNKGRL 368
           + ++ V V+   L
Sbjct: 355 KTNVVVWVDNDTL 367


>gi|332297609|ref|YP_004439531.1| flagellar M-ring protein FliF [Treponema brennaborense DSM 12168]
 gi|332180712|gb|AEE16400.1| flagellar M-ring protein FliF [Treponema brennaborense DSM 12168]
          Length = 568

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 105/437 (24%), Positives = 192/437 (43%), Gaps = 57/437 (13%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV---NRISVALSEANIDFRISDN 79
           +IL  +I V I   +    F   P    L+  + ++DV   + I   LS+ N++  ++  
Sbjct: 25  IILFGIIAVVIAALVFMLRFSAKPATVPLF-NVAITDVSARDNILYRLSQENVEAEVNAA 83

Query: 80  GSSISVPSSMVGK-ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           G  ISV      +  R  L  + L  ++ +  + LFD    + +T F + +   R++   
Sbjct: 84  GV-ISVKDEQTARRMRSVLVREDLVPTNVDP-WALFD-TERWTITDFERNVNLQRSITQM 140

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY----KSAEAIRHL 194
           + + I+++  I +A V I +P+   F       TASV+I     S      K  + I+ L
Sbjct: 141 VKQHIEALDDIDSANVVITLPERTLFASDQNPTTASVIIYPKPGSDIADNKKKIQGIQKL 200

Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANE----MER-NILGKSLSIVQAIQHEIEMNINKAL 249
           +  AV  L   ++T+ DSTG+++   E     ER +I+ K   +++ ++ E   ++ K+L
Sbjct: 201 LLRAVEGLKEENITIADSTGRIVNDFEGMAASERVDIVAKEQKLIKQLEMEYRASVLKSL 260

Query: 250 AAFLGVDNFRSA-VVAELNMDTQQIREIVYDP-------------DSKVERSIRLSKDA- 294
               G D  R   +  +++M  +Q+    Y P             DS++   + +S +  
Sbjct: 261 QQIFGTDRVRDLNIKIDMDMSKKQVAGTEYSPIVIKADNPNTPYDDSELRDYLPISSETV 320

Query: 295 ---QRSETSQPESAVTVE-QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
                     PE    VE QN P  SD      +S E   K+    N  INTK       
Sbjct: 321 TKVWTGTGYNPEGPAGVEGQNPPVYSDMSNLYGKSEETGVKQ----NNVINTKEY-QEEK 375

Query: 351 NYKLERLSIAVVV---------NKGRLTEVLGRSADQGK----IDS-YLAEINKIVSAAT 396
           +  ++R++++V +         +KG+L  VL  +    +    +DS  L+   K+V  A 
Sbjct: 376 SPSIDRVTVSVNIDGTWRRTYDDKGQL--VLNPNGTIAREYVPVDSAVLSSAAKLVQDAI 433

Query: 397 GINSRRGDTITITSMDF 413
           G N  RGD++T+ ++ +
Sbjct: 434 GYNRNRGDSVTVQNIQY 450


>gi|302387796|ref|YP_003823618.1| flagellar M-ring protein FliF [Clostridium saccharolyticum WM1]
 gi|302198424|gb|ADL05995.1| flagellar M-ring protein FliF [Clostridium saccharolyticum WM1]
          Length = 534

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 117/248 (47%), Gaps = 13/248 (5%)

Query: 48  YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           Y+ ++  +   +  +I   L E  +D++   NG  I VP++ +   +  L ++G P S  
Sbjct: 44  YEVMFTSVGNEEAKQIIGKLQEEKVDYQYL-NGD-ILVPAAQMDVTKARLVSEGYPKSGF 101

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF--- 164
              Y++F    +   T   ++  ++  LE  I  TIQ   G+  A V I + +   +   
Sbjct: 102 T--YDVFKNNVNLMTTDSDRQTFKLYDLETRIGSTIQLFDGVKEAYVTIALGETSKYALS 159

Query: 165 --RKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM 222
                 A   A V+++       + A++I+ L++ ++P + + +V+V D  GK ++ +  
Sbjct: 160 EDDAQEASAQAVVVMKDGGSPTEEQAKSIQLLISRSIPGMVISNVSVFDGNGKEVSTDSG 219

Query: 223 ERNI-LGKSL-SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE-IVYD 279
           E +I  GK+   I + I+ +I   +   L    G  N R +V   +NMD + IRE  VY+
Sbjct: 220 EEDINSGKTAEEISKLIEDQIAAKVMNVLGPVYGNGNVRVSVKGTVNMD-KLIRESTVYN 278

Query: 280 PDSKVERS 287
              K++ +
Sbjct: 279 VPEKIDEN 286


>gi|291484172|dbj|BAI85247.1| hypothetical protein BSNT_02643 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 196

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 79/158 (50%), Gaps = 4/158 (2%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M + ++  +F+K+ + L +   +++ S +   I++ +    F ++     LY  L   + 
Sbjct: 1   MQMKNKTSEFWKNRSKLQK---ILMVSALAAIIIIGIIISVFASNSKMAPLYKDLSAEEA 57

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +I   L    +   +S+ G+ ISVP   V   ++ +AA+GLP + S   Y  F +   F
Sbjct: 58  GQIKKELDAKKVPNELSNGGTVISVPEDQVDSLKVQMAAEGLPKTGS-IDYSFFGQNAGF 116

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
           GLT    ++ +V+A + E++  I  + GI  ++V I +
Sbjct: 117 GLTDNEFDMVKVKATQTELSNLINEMDGIKNSKVMITL 154


>gi|167770218|ref|ZP_02442271.1| hypothetical protein ANACOL_01561 [Anaerotruncus colihominis DSM
           17241]
 gi|167667540|gb|EDS11670.1| hypothetical protein ANACOL_01561 [Anaerotruncus colihominis DSM
           17241]
          Length = 530

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 118/267 (44%), Gaps = 18/267 (6%)

Query: 15  TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDN-LYVKLEVSDVNRISVALSEANID 73
           T L R + +I  S     +++       +N P  +  L+  +   +  ++   L +  + 
Sbjct: 17  TGLPRKKKIIFTSSAAGIVVIAAVVALILNRPSGNQVLFPDMTREESQQVYAKLQDMGVQ 76

Query: 74  FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ-EITRV 132
             I+ +G  + VP+     A   +AAQG P S  N  Y+ F   + +  + F Q ++ ++
Sbjct: 77  AEINRDGQVV-VPTEDWDNAIFEMAAQGYPKSEPN--YDFFLSNSGWTKSEFEQRQVLKM 133

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--- 189
           +A E  + + +    GI +A V   +P+   +  I  +        AI   + K AE   
Sbjct: 134 QA-EDRMRQILMGQDGIESADVSFSIPETSDY--IWDQNNKEESTAAITIKMRKGAELSP 190

Query: 190 ----AIRHLVAAAVPNLDMGDVTVLD-STGKLLTANEMERNIL--GKSLSIVQAIQHEIE 242
               A+++L A ++PNL   +V V+D +TG  + A + E   +   K L   + I   IE
Sbjct: 191 ERVQAVKNLAAYSIPNLTADNVVVVDAATGVQMEAADDESASMFSDKRLEFERQIARGIE 250

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMD 269
            NI + L+   GVD   +    EL+ D
Sbjct: 251 DNIIRILSPRYGVDGVTAVARVELDYD 277


>gi|222095370|ref|YP_002529430.1| flagellar ms-ring protein [Bacillus cereus Q1]
 gi|221239428|gb|ACM12138.1| flagellar M-ring protein [Bacillus cereus Q1]
          Length = 524

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 78/373 (20%), Positives = 168/373 (45%), Gaps = 35/373 (9%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           SL     L++ + +L   ++  A  +F     Y  +Y  L  +D   I+  LS+  +D++
Sbjct: 10  SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132
           ++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   +++ ++   
Sbjct: 68  LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124

Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189
            + LE +I R   ++     A V I +P+  + F +  A+ TA++ +      +  + + 
Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181

Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSLSIVQAIQHEIEM 243
             I+ +++AAVP +   +V+V+DS   +++    E +        K + +   I+ +++ 
Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHATSSSSYEKEVEMQHQIEGKLKQ 241

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           +I+  L      + ++      +N D     E+    +   ++ +  SK  Q  ETS  +
Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQE-ETSTAQ 295

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355
                +Q     ++ +VP   +  N + K         +  NYEI+ K++ T   + +L 
Sbjct: 296 EGADTKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEID-KTVETIKKHPELT 354

Query: 356 RLSIAVVVNKGRL 368
           + ++ V V+   L
Sbjct: 355 KTNVVVWVDNDTL 367


>gi|206974945|ref|ZP_03235860.1| putative flagellar M-ring protein FliF [Bacillus cereus H3081.97]
 gi|206746964|gb|EDZ58356.1| putative flagellar M-ring protein FliF [Bacillus cereus H3081.97]
          Length = 524

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 80/385 (20%), Positives = 175/385 (45%), Gaps = 38/385 (9%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +++L   F+S   L     L++ + +L   ++  A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKLKNVFQS---LKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +
Sbjct: 56  TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSS 112

Query: 124 SFMQEITRV----RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIR 178
              +++ ++    + LE +I R   ++     A V I +P+  + F +  A+ TA++ + 
Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVG 169

Query: 179 AINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSL 231
                +  + +   I+ +++AAVP +   +V+V+DS   +++     A+    +   K +
Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            +   I+ +++ +I+  L      + ++      +N D     E+    +   ++ +  S
Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRS 284

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTK 343
           K  Q  ETS  +     +Q     ++ +VP   +  N + K         +  NYEI+ K
Sbjct: 285 KQEQE-ETSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEID-K 342

Query: 344 SIATTHDNYKLERLSIAVVVNKGRL 368
           ++ T   + +L + ++ V V+   L
Sbjct: 343 TVETIKKHPELTKTNVVVWVDNDTL 367


>gi|229155317|ref|ZP_04283428.1| Flagellar M-ring protein fliF [Bacillus cereus ATCC 4342]
 gi|228628242|gb|EEK84958.1| Flagellar M-ring protein fliF [Bacillus cereus ATCC 4342]
          Length = 524

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 80/372 (21%), Positives = 166/372 (44%), Gaps = 33/372 (8%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           SL     L++ + +L   ++  A  +F     Y  +Y  L  +D   I+  LS+  +D++
Sbjct: 10  SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF--DKVNSFGLTSFMQEITRVR 133
           ++ +G SI V  +     R  +   GLP +S  SG E+     + S      M++I   R
Sbjct: 68  LATDG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLESSLGSSEQDKKMKQIVGTR 125

Query: 134 A-LEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE-- 189
             LE +I R   ++     A V I +P+  + F +  A+ TA++ +      +  + +  
Sbjct: 126 KQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQVA 182

Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEMN 244
            I+ +++AAVP +   +V+V+DS   +++     A+    +   K + +   I+ +++ +
Sbjct: 183 GIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEVEMQHQIEGKLKQD 242

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           I+  L      + ++      +N D     E+    +   ++ +  SK  Q   ++  E 
Sbjct: 243 IDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQEG 297

Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLER 356
           A T +Q     ++ +VP   +  N + K         +  NYEI+ K++ T   + +L +
Sbjct: 298 AET-KQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEID-KTVETIKKHPELTK 355

Query: 357 LSIAVVVNKGRL 368
            ++ V V+   L
Sbjct: 356 TNVVVWVDNDTL 367


>gi|228933030|ref|ZP_04095893.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228826631|gb|EEM72402.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 524

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 78/373 (20%), Positives = 170/373 (45%), Gaps = 35/373 (9%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           SL     L++ + +L   ++  A  +F     Y  +Y  L  +D   I+  LS+  +D++
Sbjct: 10  SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132
           ++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   +++ ++   
Sbjct: 68  LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124

Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189
            + LE +I R   ++     A V I +P+  + F +  A+ TA++ +      +  + + 
Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181

Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243
             I+ +++AAVP +   +V+V+DS   +++     A+    +   K + + Q I+ +++ 
Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEVEMQQQIEGKLKQ 241

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           +I+  L      + ++      +N D     E+    +   ++ +  SK  Q  E+S  +
Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQE-ESSTAQ 295

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355
                +Q     ++ +VP   +  N + K         +  NYEI+ K++ T   + +L 
Sbjct: 296 EGAEAKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEID-KTVETIKKHPELT 354

Query: 356 RLSIAVVVNKGRL 368
           + ++ V V+   L
Sbjct: 355 KTNVVVWVDNDTL 367


>gi|229058380|ref|ZP_04196764.1| Flagellar M-ring protein fliF [Bacillus cereus AH603]
 gi|229132559|ref|ZP_04261408.1| Flagellar M-ring protein fliF [Bacillus cereus BDRD-ST196]
 gi|228650905|gb|EEL06891.1| Flagellar M-ring protein fliF [Bacillus cereus BDRD-ST196]
 gi|228719889|gb|EEL71479.1| Flagellar M-ring protein fliF [Bacillus cereus AH603]
          Length = 526

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 81/373 (21%), Positives = 170/373 (45%), Gaps = 35/373 (9%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           SL     L++ + +L   +   A  +F     Y  +Y  L  +D   I+  LS+  +D++
Sbjct: 10  SLKTWHKLVIGAALLA--IATGALLYFTLPDKYVVVYQNLNDTDKQEITAELSKLGVDYQ 67

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132
           ++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   +++ ++   
Sbjct: 68  LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124

Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189
            + LE +I R   +I     A V I +P+  + F +  A+ TA++ +      +  + + 
Sbjct: 125 KKQLEQDIVRNFATIE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181

Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERN---ILGKSLSIVQAIQHEIEM 243
             I+ +++AAVP +   +V+V+DS   +++  A+E   N      K + +   I+ +++ 
Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGIISKGADEAHSNSSSSYEKEVEMQHQIEGKLKQ 241

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           +I+  L      + ++      +N D     E+    +   ++ +  SK  Q   ++  E
Sbjct: 242 DIDATLMTMFKSNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355
            A T +Q     ++ +VP   +  N + K         +  NYEI+ K++ T   + +L 
Sbjct: 297 GADT-KQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEID-KTVETIKKHPELT 354

Query: 356 RLSIAVVVNKGRL 368
           + ++ V V+   L
Sbjct: 355 KTNVVVWVDNDTL 367


>gi|163939552|ref|YP_001644436.1| flagellar MS-ring protein [Bacillus weihenstephanensis KBAB4]
 gi|163861749|gb|ABY42808.1| flagellar M-ring protein FliF [Bacillus weihenstephanensis KBAB4]
          Length = 524

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 81/373 (21%), Positives = 170/373 (45%), Gaps = 35/373 (9%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           SL     L++ + +L   +   A  +F     Y  +Y  L  +D   I+  LS+  +D++
Sbjct: 10  SLKTWHKLVIGAALLA--IATGALLYFTLPDKYVVVYQNLNDTDKQEITAELSKLGVDYQ 67

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132
           ++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   +++ ++   
Sbjct: 68  LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124

Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189
            + LE +I R   +I     A V I +P+  + F +  A+ TA++ +      +  + + 
Sbjct: 125 KKQLEQDIVRNFATIE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181

Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERN---ILGKSLSIVQAIQHEIEM 243
             I+ +++AAVP +   +V+V+DS   +++  A+E   N      K + +   I+ +++ 
Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGIISKGADEAHSNSSSSYEKEVEMQHQIEGKLKQ 241

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           +I+  L      + ++      +N D     E+    +   ++ +  SK  Q   ++  E
Sbjct: 242 DIDATLMTMFKSNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355
            A T +Q     ++ +VP   +  N + K         +  NYEI+ K++ T   + +L 
Sbjct: 297 GADT-KQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEID-KTVETIKKHPELT 354

Query: 356 RLSIAVVVNKGRL 368
           + ++ V V+   L
Sbjct: 355 KTNVVVWVDNDTL 367


>gi|167566308|ref|ZP_02359224.1| lipoprotein transmembrane protein [Burkholderia oklahomensis EO147]
          Length = 258

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 84/167 (50%), Gaps = 12/167 (7%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSMVGKARIHLAAQGLPSSS 106
           LY  L   D N +  AL +  +D   +  D G +  ++V    + KA   L A+GLP++ 
Sbjct: 39  LYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPATR 98

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMGS 163
            +    LF K    GL S   E  RVR + G   E++ T+  I G+V ARVHIV+P+   
Sbjct: 99  YDDLGALFKK---DGLVSTPTE-ERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDP 154

Query: 164 FRKIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209
           F ++    +ASV I+   N ++      I++LV  +V  L   +V+V
Sbjct: 155 FAQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSV 201


>gi|239628992|ref|ZP_04672023.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519138|gb|EEQ59004.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 537

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 130/288 (45%), Gaps = 28/288 (9%)

Query: 13  SGTSLGRTRIL------ILASVILVPIMLFMAARFFVN---SPHYDNLYVKLEVSDVNRI 63
           SG   G  R+L       +A+ I   +++ +AA   +N   S +Y  L+  +   + N +
Sbjct: 11  SGEKGGIGRVLDTGKKKAVAAGITAAVVIALAASVLLNTKKSGNYVALFPGISKEENNEV 70

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L+   ++ R +  G  ++VP   +G   + ++  G P ++    +++F     F  T
Sbjct: 71  LTVLNARGVEARRNSEGE-VTVPEDQLGDIMLDMSELGYPKTAL--PFDIFSDNMGFTTT 127

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMIRAIN 181
            F +    +  L+  I RT++ ++G+  A V + +PD  ++   + G+  T S+ +  + 
Sbjct: 128 EFEKRQYLLMNLQDRIERTLKDMTGVKNAIVTLNVPDESNYVWDEGGSNSTGSISL-TLM 186

Query: 182 PSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS------LS 232
           PS   S E   AI++LVA +VP L   +VTV+++     T  EM  + +G +      L 
Sbjct: 187 PSYELSPEKVSAIKNLVADSVPRLLPENVTVVNAE----TMQEMVADDIGTTSYGLNRLD 242

Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP 280
               ++  +E  I   L      D  R +    ++ D     ++ Y+P
Sbjct: 243 FEAKVEERLENKIKNVLTLAYSPDKLRVSATVVIDYDRMITEDLHYEP 290


>gi|229160710|ref|ZP_04288702.1| Flagellar M-ring protein fliF [Bacillus cereus R309803]
 gi|228622725|gb|EEK79559.1| Flagellar M-ring protein fliF [Bacillus cereus R309803]
          Length = 524

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 79/373 (21%), Positives = 169/373 (45%), Gaps = 35/373 (9%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           SL     L++ + +L   ++  A  +F     Y  +Y  L  +D   I+  LS+  +D++
Sbjct: 10  SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132
           ++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   +++ ++   
Sbjct: 68  LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124

Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189
            + LE +I R   ++     A V I +P+  + F +  A+ TA++ +      +  + + 
Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181

Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243
             I+ +++AAVP +   +V+V+DS   L++     AN    +   K + +   I+ +++ 
Sbjct: 182 AGIQQMISAAVPGVKPEEVSVIDSKKGLISKGADAANTNSSSSYEKEVEMQHQIEGKLKQ 241

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           +I+  L      + ++      +N D     E+    +   ++ +  SK  Q  E+S  +
Sbjct: 242 DIDATLMTMFKPNEYKVNTKVTVNYD-----EVTRQSEKYGDKGVLRSKQEQE-ESSTAQ 295

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355
                +Q     ++ +VP   +  N + K         +  NYEI+ K++ T   + +L 
Sbjct: 296 EGADAKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEID-KTVETIKKHPELT 354

Query: 356 RLSIAVVVNKGRL 368
           + ++ V V+   L
Sbjct: 355 KTNVVVWVDNDTL 367


>gi|2105148|gb|AAB57899.1| FliF [Treponema denticola]
          Length = 567

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 122/268 (45%), Gaps = 33/268 (12%)

Query: 53  VKLEVSDVN---RISVALSEANIDFRISDNG--SSISVPSSMVGKARIHLAAQGLPSSSS 107
           + + ++DV+   RI + ++E N+   IS +G  S   V ++      I L    +P ++S
Sbjct: 54  IDMAITDVDLRDRIILRINEGNVKTSISSDGIISVADVEATARRMRTILLREDLIPKNTS 113

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
              +  FD V  +  T F +EI   RA+  E+ R ++++  I  A V + +P+   F   
Sbjct: 114 --PWAFFD-VERYSRTDFEREIDVRRAITEEVKRHLKALDDIDDANVVVRIPEKALFESE 170

Query: 168 GARPTASVMIRAINPSVY----KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME 223
               TA+V+I     S      K  E I+ ++  AVP L   D+T+ D++G  L   E+ 
Sbjct: 171 QLPATATVVITPAPGSDISTNRKKIEGIQKMLRLAVPGLKNEDITISDASGIPLNDFEIM 230

Query: 224 RN-----ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVV------AELNMDTQQ 272
           ++     ++ K    +  ++ +   NI   L    G D  R   V      +E + DT +
Sbjct: 231 KDADRLTLIEKQQKFIAKLERQYGANILTPLQKIYGEDRVRDINVKIDMDMSERSADTTE 290

Query: 273 IR---------EIVYDPDSKVERSIRLS 291
           IR         E  YD DS+V +S+ +S
Sbjct: 291 IRPTVIKEDNPETSYD-DSQVVQSVTVS 317


>gi|229102345|ref|ZP_04233053.1| Flagellar M-ring protein fliF [Bacillus cereus Rock3-28]
 gi|228680992|gb|EEL35161.1| Flagellar M-ring protein fliF [Bacillus cereus Rock3-28]
          Length = 524

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 76/372 (20%), Positives = 168/372 (45%), Gaps = 33/372 (8%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           SL     L++ + +L   ++  A  +F     Y  +Y  L  +D   I+  LS+  +D++
Sbjct: 10  SLKTWHKLVIGAALLA--VVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132
           ++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   +++ ++   
Sbjct: 68  LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124

Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189
            + LE +I R   ++     A V I +P+  + F +  A+ TA++ +      +  + + 
Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181

Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERN---ILGKSLSIVQAIQHEIEM 243
             I+ +++AAVP +   +V+V+DS   +++  A+E   N      K + +   I+ +++ 
Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGIISKGADEAHSNSSSSYEKEVEMQHQIEGKLKQ 241

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           +I+  L      + ++      +N D     E+    +   ++ +  SK  Q   ++  E
Sbjct: 242 DIDATLMTMFKSNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296

Query: 304 SA-------VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
            A       +T   ++P+         + + +     +  NYEI+ K++ T   + +L +
Sbjct: 297 GADTKQGAGITANGDVPNYGTNNNQNGKVVYDNKNGNKIENYEID-KTVETIKKHPELTK 355

Query: 357 LSIAVVVNKGRL 368
            ++ V V+   L
Sbjct: 356 TNVVVWVDNDTL 367


>gi|325473786|gb|EGC76974.1| FliF protein [Treponema denticola F0402]
          Length = 567

 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 122/268 (45%), Gaps = 34/268 (12%)

Query: 53  VKLEVSDVN---RISVALSEANIDFRISDNGSSISVPSSMVGKA--RIHLAAQGLPSSSS 107
           + + ++DV+   RI + ++E N+   IS +G  ISV      +    I L    +P ++S
Sbjct: 54  IDMAITDVDLRDRIILRINEENVKTTISSDGI-ISVADEATARRMRTILLREDLIPKNTS 112

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
              +  FD V  +  T F +EI   RA+  E+ R ++++  I  A V + +P+   F   
Sbjct: 113 --PWAFFD-VERYSRTDFEREIDVRRAITEEVKRHLKALDDIDDANVVVRIPEKALFESE 169

Query: 168 GARPTASVMIRAINPSVY----KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME 223
               TA+V+I     S      K  E I+ ++  AVP L   D+T+ D++G  L   E+ 
Sbjct: 170 QLPATATVVITPAPGSDISTNRKKIEGIQKMLRLAVPGLKNEDITISDASGIPLNDFEIM 229

Query: 224 RN-----ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVV------AELNMDTQQ 272
           ++     ++ K    +  ++ +   NI   L    G D  R   V      +E + DT +
Sbjct: 230 KDADRLTLIEKQQKFIAKLERQYGANILTPLQKIYGEDRVRDINVKIDMDMSERSADTTE 289

Query: 273 IR---------EIVYDPDSKVERSIRLS 291
           IR         E  YD DS+V +S+ +S
Sbjct: 290 IRPTVIKEDNPETSYD-DSQVVQSVTVS 316


>gi|317407862|gb|EFV87788.1| BscJ protein [Achromobacter xylosoxidans C54]
          Length = 284

 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 100/207 (48%), Gaps = 17/207 (8%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIML-FMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           +F + G   G  R+ ++ S++L+  ML    AR         +L   +   + N +   L
Sbjct: 7   EFRRLGARRGYRRVWLIGSLLLLLAMLTACGARV--------DLLAAVPEGEANEVLSVL 58

Query: 68  SEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            +A I  + S    G +I+V +  V +A   L A+GLP    +   ++F K     ++S 
Sbjct: 59  LDAGIAAQKSAGKAGVAINVQADQVAQALAVLRARGLPRERFDGMGQIFRKEGL--VSSP 116

Query: 126 MQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           ++E  R + AL  E+A T+  + G++AARVH+V+P+ G   +     TA+V I+   P  
Sbjct: 117 LEERARYIYALSQELANTLSQMDGVIAARVHVVLPERGGVGEEATPSTAAVFIK-TQPGY 175

Query: 185 YKSA--EAIRHLVAAAVPNLDMGDVTV 209
              A    IR LV  A+P L    V+V
Sbjct: 176 ALDALLPQIRRLVIHAIPGLSEDKVSV 202


>gi|229096232|ref|ZP_04227205.1| Flagellar M-ring protein fliF [Bacillus cereus Rock3-29]
 gi|229115187|ref|ZP_04244597.1| Flagellar M-ring protein fliF [Bacillus cereus Rock1-3]
 gi|228668327|gb|EEL23759.1| Flagellar M-ring protein fliF [Bacillus cereus Rock1-3]
 gi|228687192|gb|EEL41097.1| Flagellar M-ring protein fliF [Bacillus cereus Rock3-29]
          Length = 524

 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 76/372 (20%), Positives = 168/372 (45%), Gaps = 33/372 (8%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           SL     L++ + +L   ++  A  +F     Y  +Y  L  +D   I+  LS+  +D++
Sbjct: 10  SLKTWHKLVIGAALLA--VVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132
           ++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   +++ ++   
Sbjct: 68  LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124

Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189
            + LE +I R   ++     A V I +P+  + F +  A+ TA++ +      +  + + 
Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181

Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERN---ILGKSLSIVQAIQHEIEM 243
             I+ +++AAVP +   +V+V+DS   +++  A+E   N      K + +   I+ +++ 
Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGIISKGADEAHSNSSSSYEKEVEMQHQIEGKLKQ 241

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           +I+  L      + ++      +N D     E+    +   ++ +  SK  Q   ++  E
Sbjct: 242 DIDATLMTMFKSNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296

Query: 304 SA-------VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
            A       +T   ++P+         + + +     +  NYEI+ K++ T   + +L +
Sbjct: 297 GADTKQGAGITANGDVPNYGTNNNQNGKVVYDNKNGNKIENYEID-KTVETIKKHPELTK 355

Query: 357 LSIAVVVNKGRL 368
            ++ V V+   L
Sbjct: 356 TNVVVWVDNDTL 367


>gi|42526724|ref|NP_971822.1| flagellar MS-ring protein [Treponema denticola ATCC 35405]
 gi|41817039|gb|AAS11733.1| flagellar M-ring protein FliF [Treponema denticola ATCC 35405]
          Length = 567

 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 122/268 (45%), Gaps = 34/268 (12%)

Query: 53  VKLEVSDVN---RISVALSEANIDFRISDNGSSISVPSSMVGKA--RIHLAAQGLPSSSS 107
           + + ++DV+   RI + ++E N+   IS +G  ISV      +    I L    +P ++S
Sbjct: 54  IDMAITDVDLRDRIILRINEENVKTTISSDGI-ISVADEATARRMRTILLREDLIPKNTS 112

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
              +  FD V  +  T F +EI   RA+  E+ R ++++  I  A V + +P+   F   
Sbjct: 113 --PWAFFD-VERYSRTDFEREIDVRRAITEEVKRHLKALDDIDDANVVVRIPEKALFESE 169

Query: 168 GARPTASVMIRAINPSVY----KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME 223
               TA+V+I     S      K  E I+ ++  AVP L   D+T+ D++G  L   E+ 
Sbjct: 170 QLPATATVVITPAPGSDISTNRKKIEGIQKMLRLAVPGLKNEDITISDASGIPLNDFEIM 229

Query: 224 RN-----ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVV------AELNMDTQQ 272
           ++     ++ K    +  ++ +   NI   L    G D  R   V      +E + DT +
Sbjct: 230 KDADRLTLIEKQQKFIAKLERQYGANILTPLQKIYGEDRVRDINVKIDMDMSERSADTTE 289

Query: 273 IR---------EIVYDPDSKVERSIRLS 291
           IR         E  YD DS+V +S+ +S
Sbjct: 290 IRPTVIKEDNPETSYD-DSQVVQSVTVS 316


>gi|196033494|ref|ZP_03100906.1| putative flagellar M-ring protein FliF [Bacillus cereus W]
 gi|195993928|gb|EDX57884.1| putative flagellar M-ring protein FliF [Bacillus cereus W]
          Length = 524

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 78/373 (20%), Positives = 170/373 (45%), Gaps = 35/373 (9%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           SL     L++ + +L   ++  A  +F     Y  +Y  L  +D   I+  LS+  +D++
Sbjct: 10  SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132
           ++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   +++ ++   
Sbjct: 68  LATDG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124

Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189
            + LE +I R   ++     A V I +P+  + F +  A+ TA++ +      +  + + 
Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181

Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243
             I+ +++AAVP +   +V+V+DS   +++     A+    +   K + +   I+ +++ 
Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEVEMQHQIEGKLKQ 241

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           +I+  L      + ++      +N D     E+    +   ++ +  SK  Q   ++  E
Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355
            A T +Q     ++ +VP   +  N + K         +  NYEI+ K++ T   + +L 
Sbjct: 297 GAET-KQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEID-KTVETIKKHPELT 354

Query: 356 RLSIAVVVNKGRL 368
           + ++ V V+   L
Sbjct: 355 KTNVVVWVDNDTL 367


>gi|225375317|ref|ZP_03752538.1| hypothetical protein ROSEINA2194_00942 [Roseburia inulinivorans DSM
           16841]
 gi|225212806|gb|EEG95160.1| hypothetical protein ROSEINA2194_00942 [Roseburia inulinivorans DSM
           16841]
          Length = 536

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 60/288 (20%), Positives = 129/288 (44%), Gaps = 15/288 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +LD++L+++K   +  +T ++ + +V+LV + +  A    V+ P    L      ++  +
Sbjct: 10  VLDRILEWWKKFNTKQKTLLISIVAVVLVALAILAAV---VSKPKMVTLVTCATTAESGQ 66

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +   L   NI + +S +G +  V       A I L    +P+S +    ++FD     G 
Sbjct: 67  VKNILDSENISYELSADGLAFQVNEKDYANASIVLGTNDIPTSGTKLS-DVFDG----GF 121

Query: 123 TSFMQEITRVRA--LEGEIARTIQSISGIVAARVHIVMPDM-GSFRKIGARPTASVMIRA 179
           +S   + T+     LE   A  ++++S + AA V + +PD  G+    G +   + ++  
Sbjct: 122 SSTEADKTKKYKLYLEEYYAEKLETLSNVDAAAVTLDLPDEDGTILSKGEQAYVTAILTL 181

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS---LSIVQA 236
                 + A  +   +A  V N D  +V +LD++  +L + + + ++ G +   LS+   
Sbjct: 182 NGTMDDEQAAGLAKYLATNVGNDDTSNVLILDNSSNVLFSGQDDTSVTGNANNQLSLKTK 241

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPDSK 283
            +++++  +   L      DN    +   +N D T +     Y PD +
Sbjct: 242 AENQVKGQVKDVLVGSSLFDNVEVGLNLAMNFDQTTESTHEYYAPDGQ 289


>gi|152975158|ref|YP_001374675.1| flagellar MS-ring protein [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152023910|gb|ABS21680.1| flagellar M-ring protein FliF [Bacillus cytotoxicus NVH 391-98]
          Length = 521

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 73/369 (19%), Positives = 167/369 (45%), Gaps = 34/369 (9%)

Query: 21  RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80
           +++I A+++ +     +   +F     Y  +Y  L  +D   I+  LS+  +D+++ ++G
Sbjct: 16  KMVIGAAILAIGTGALL---YFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQLVNDG 72

Query: 81  SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS----FMQEITRVRALE 136
           + I VP+      R  +   GLP +S  SG E+  + +S G +       Q +   + LE
Sbjct: 73  A-IKVPTKDAPWIRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQLVGTKKQLE 129

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE--AIRH 193
            +I R   +I    +A V I +P+  + F +  A+ TA++ +      +    +   I+ 
Sbjct: 130 QDIVRNFATIE---SANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTEDQVAGIQQ 186

Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEMNINKA 248
           +++AAV  +   +V+V+DS   +++     +     +   K + + Q I+++++ +I+  
Sbjct: 187 MISAAVSGVKPEEVSVIDSKKGIVSKGADASTHASSSSYEKEVEMQQQIENKLKQDIDAT 246

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA--- 305
           L      + F+      +N D     E+    +   ++ +  S+  Q+  ++  E A   
Sbjct: 247 LMTMFKANEFKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSRQDQQERSTAQEGADAK 301

Query: 306 ----VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
               +T    +P+         + + + +   +  NYEI+ K++ T   + +L + ++ V
Sbjct: 302 QGAGITANGEVPNYGTNNNQNGKVVYDNNNGNKIENYEID-KTVETIKKHPELTKTNVVV 360

Query: 362 VVNKGRLTE 370
            V+   LT+
Sbjct: 361 WVDNDTLTK 369


>gi|49184575|ref|YP_027827.1| flagellar MS-ring protein [Bacillus anthracis str. Sterne]
 gi|65319014|ref|ZP_00391973.1| COG1766: Flagellar biosynthesis/type III secretory pathway
           lipoprotein [Bacillus anthracis str. A2012]
 gi|227815496|ref|YP_002815505.1| putative flagellar M-ring protein FliF [Bacillus anthracis str. CDC
           684]
 gi|254683235|ref|ZP_05147096.1| flagellar MS-ring protein [Bacillus anthracis str. CNEVA-9066]
 gi|254734587|ref|ZP_05192299.1| flagellar MS-ring protein [Bacillus anthracis str. Western North
           America USA6153]
 gi|254740996|ref|ZP_05198684.1| flagellar MS-ring protein [Bacillus anthracis str. Kruger B]
 gi|254755239|ref|ZP_05207273.1| flagellar MS-ring protein [Bacillus anthracis str. Vollum]
 gi|254759775|ref|ZP_05211799.1| flagellar MS-ring protein [Bacillus anthracis str. Australia 94]
 gi|49178502|gb|AAT53878.1| secretory protein of YscJ/FliF family (flagellar M-ring protein)
           [Bacillus anthracis str. Sterne]
 gi|227005826|gb|ACP15569.1| putative flagellar M-ring protein FliF [Bacillus anthracis str. CDC
           684]
          Length = 460

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 78/373 (20%), Positives = 170/373 (45%), Gaps = 35/373 (9%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           SL     L++ + +L   ++  A  +F     Y  +Y  L  +D   I+  LS+  +D++
Sbjct: 10  SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132
           ++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   +++ ++   
Sbjct: 68  LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124

Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189
            + LE +I R   ++     A V I +P+  + F +  A+ TA++ +      +  + + 
Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181

Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243
             I+ +++AAVP +   +V+V+DS   +++     A+    +   K + +   I+ +++ 
Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEVEMQHQIEGKLKQ 241

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           +I+  L      + ++      +N D     E+    +   ++ +  SK  Q   ++  E
Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355
            A T +Q     ++ +VP   +  N + K         +  NYEI+ K++ T   + +L 
Sbjct: 297 GAET-KQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEID-KTVETIKKHPELT 354

Query: 356 RLSIAVVVNKGRL 368
           + ++ V V+   L
Sbjct: 355 KTNVVVWVDNDTL 367


>gi|228984830|ref|ZP_04145002.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228775028|gb|EEM23422.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 524

 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 78/373 (20%), Positives = 170/373 (45%), Gaps = 35/373 (9%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           SL     L++ + +L   ++  A  +F     Y  +Y  L  +D   I+  LS+  +D++
Sbjct: 10  SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132
           ++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   +++ ++   
Sbjct: 68  LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124

Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189
            + LE +I R   ++     A V I +P+  + F +  A+ TA++ +      +  + + 
Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181

Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243
             I+ +++AAVP +   +V+V+DS   +++     A+    +   K + +   I+ +++ 
Sbjct: 182 TGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEVEMQHQIEGKLKQ 241

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           +I+  L      + ++      +N D     E+    +   ++ +  SK  Q   ++  E
Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355
            A T +Q     ++ +VP   +  N + K         +  NYEI+ K++ T   + +L 
Sbjct: 297 GAET-KQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEID-KTVETIKKHPELT 354

Query: 356 RLSIAVVVNKGRL 368
           + ++ V V+   L
Sbjct: 355 KTNVVVWVDNDTL 367


>gi|332526232|ref|ZP_08402363.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Rubrivivax benzoatilyticus JA2]
 gi|332110068|gb|EGJ10696.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Rubrivivax benzoatilyticus JA2]
          Length = 239

 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 7/167 (4%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDF---RISDNGSSISVPSSMVGKARIHLAAQGLPSS 105
           + LY +L+  + N +   L+ A ID    R+     ++ V      +A   L A G P  
Sbjct: 33  EELYAQLDEREANEMVALLTHAGIDAAKQRVDGGQFALRVGGGEFARAVQVLHAAGYPRE 92

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
              S   +F K   F  T   +    + AL  E+A T+Q+I G+V ARVH+ +P+   F 
Sbjct: 93  GHESLGTMFKK-EGFVTTQLEERARFMHALSQELAGTLQNIDGVVLARVHLAVPEKRRFA 151

Query: 166 KIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVL 210
           +    P+A+ +   + P V  + +  +I+ LV  A+  L    VTV+
Sbjct: 152 EK-PEPSAAAVFLKVRPGVDLAPQIGSIKALVVNAIEGLPYEQVTVV 197


>gi|196045123|ref|ZP_03112356.1| putative flagellar M-ring protein FliF [Bacillus cereus 03BB108]
 gi|196024125|gb|EDX62799.1| putative flagellar M-ring protein FliF [Bacillus cereus 03BB108]
          Length = 524

 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 78/373 (20%), Positives = 170/373 (45%), Gaps = 35/373 (9%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           SL     L++ + +L   ++  A  +F     Y  +Y  L  +D   I+  LS+  +D++
Sbjct: 10  SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132
           ++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   +++ ++   
Sbjct: 68  LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124

Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189
            + LE +I R   ++     A V I +P+  + F +  A+ TA++ +      +  + + 
Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181

Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243
             I+ +++AAVP +   +V+V+DS   +++     A+    +   K + +   I+ +++ 
Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEVEMQHQIEGKLKQ 241

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           +I+  L      + ++      +N D     E+    +   ++ +  SK  Q   ++  E
Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355
            A T +Q     ++ +VP   +  N + K         +  NYEI+ K++ T   + +L 
Sbjct: 297 GAET-KQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEID-KTVETIKKHPELT 354

Query: 356 RLSIAVVVNKGRL 368
           + ++ V V+   L
Sbjct: 355 KTNVVVWVDNDTL 367


>gi|2935534|gb|AAC38609.1| BscJ [Bordetella bronchiseptica]
          Length = 274

 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 18/161 (11%)

Query: 59  DVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
           + N +  AL EA I  +      G ++SVP+  V ++   L A GLP    +    +F K
Sbjct: 43  EANEVLAALLEAGIAAQKQSGKAGYAVSVPAEAVARSLEILRASGLPREQFDGMGRIFRK 102

Query: 117 VNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
                ++S ++E  R + AL  E+A T+  I G+++ARVH+V+P+ G+  +     TA V
Sbjct: 103 EGL--VSSPLEERARYIYALSQELADTLSQIDGVLSARVHVVLPERGAVGEPATPSTAGV 160

Query: 176 MIRAINPSVYKSAEA-------IRHLVAAAVPNLDMGDVTV 209
            ++      Y+  ++       IR LV  A+P L    V+V
Sbjct: 161 FLK------YRDGQSLDALVPEIRKLVTHAIPGLAEDRVSV 195


>gi|33600610|ref|NP_888170.1| putative type III secretion protein [Bordetella bronchiseptica
           RB50]
 gi|33568209|emb|CAE32122.1| putative type III secretion protein [Bordetella bronchiseptica
           RB50]
          Length = 274

 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 18/161 (11%)

Query: 59  DVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
           + N +  AL EA I  +      G ++SVP+  V ++   L A GLP    +    +F K
Sbjct: 43  EANEVLAALLEAGIAAQKQSGKAGYAVSVPAEAVARSLEILRASGLPREQFDGMGRIFRK 102

Query: 117 VNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
                ++S ++E  R + AL  E+A T+  I G+++ARVH+V+P+ G+  +     TA V
Sbjct: 103 EGL--VSSPLEERARYIYALSQELADTLSQIDGVLSARVHVVLPERGAVGEPATPSTAGV 160

Query: 176 MIRAINPSVYKSAEA-------IRHLVAAAVPNLDMGDVTV 209
            ++      Y+  ++       IR LV  A+P L    V+V
Sbjct: 161 FLK------YRDGQSLDALVPEIRKLVTHAIPGLAEDRVSV 195


>gi|229121298|ref|ZP_04250529.1| Flagellar M-ring protein fliF [Bacillus cereus 95/8201]
 gi|228662143|gb|EEL17752.1| Flagellar M-ring protein fliF [Bacillus cereus 95/8201]
          Length = 524

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 78/373 (20%), Positives = 170/373 (45%), Gaps = 35/373 (9%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           SL     L++ + +L   ++  A  +F     Y  +Y  L  +D   I+  LS+  +D++
Sbjct: 10  SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132
           ++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   +++ ++   
Sbjct: 68  LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124

Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189
            + LE +I R   ++     A V I +P+  + F +  A+ TA++ +      +  + + 
Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181

Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243
             I+ +++AAVP +   +V+V+DS   +++     A+    +   K + +   I+ +++ 
Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEVEMQHQIEGKLKQ 241

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           +I+  L      + ++      +N D     E+    +   ++ +  SK  Q   ++  E
Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355
            A T +Q     ++ +VP   +  N + K         +  NYEI+ K++ T   + +L 
Sbjct: 297 GAET-KQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEID-KTVETIKKHPELT 354

Query: 356 RLSIAVVVNKGRL 368
           + ++ V V+   L
Sbjct: 355 KTNVVVWVDNDTL 367


>gi|228914325|ref|ZP_04077940.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228845319|gb|EEM90355.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 524

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 78/373 (20%), Positives = 170/373 (45%), Gaps = 35/373 (9%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           SL     L++ + +L   ++  A  +F     Y  +Y  L  +D   I+  LS+  +D++
Sbjct: 10  SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132
           ++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   +++ ++   
Sbjct: 68  LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124

Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189
            + LE +I R   ++     A V I +P+  + F +  A+ TA++ +      +  + + 
Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181

Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243
             I+ +++AAVP +   +V+V+DS   +++     A+    +   K + +   I+ +++ 
Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEVEMQHQIEGKLKQ 241

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           +I+  L      + ++      +N D     E+    +   ++ +  SK  Q   ++  E
Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355
            A T +Q     ++ +VP   +  N + K         +  NYEI+ K++ T   + +L 
Sbjct: 297 GAET-KQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEID-KTVETIKKHPELT 354

Query: 356 RLSIAVVVNKGRL 368
           + ++ V V+   L
Sbjct: 355 KTNVVVWVDNDTL 367


>gi|49477313|ref|YP_035866.1| flagellar MS-ring protein [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|52143713|ref|YP_083117.1| flagellar MS-ring protein [Bacillus cereus E33L]
 gi|196038966|ref|ZP_03106273.1| putative flagellar M-ring protein FliF [Bacillus cereus NVH0597-99]
 gi|218902861|ref|YP_002450695.1| putative flagellar M-ring protein FliF [Bacillus cereus AH820]
 gi|225863605|ref|YP_002748983.1| putative flagellar M-ring protein FliF [Bacillus cereus 03BB102]
 gi|228926782|ref|ZP_04089850.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228945349|ref|ZP_04107704.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229183938|ref|ZP_04311154.1| Flagellar M-ring protein fliF [Bacillus cereus BGSC 6E1]
 gi|254723823|ref|ZP_05185609.1| flagellar MS-ring protein [Bacillus anthracis str. A1055]
 gi|301053283|ref|YP_003791494.1| flagellar M-ring protein [Bacillus anthracis CI]
 gi|49328869|gb|AAT59515.1| flagellar M-ring protein [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|51977182|gb|AAU18732.1| flagellar M-ring protein [Bacillus cereus E33L]
 gi|196030111|gb|EDX68711.1| putative flagellar M-ring protein FliF [Bacillus cereus NVH0597-99]
 gi|218537965|gb|ACK90363.1| putative flagellar M-ring protein FliF [Bacillus cereus AH820]
 gi|225787831|gb|ACO28048.1| putative flagellar M-ring protein FliF [Bacillus cereus 03BB102]
 gi|228599590|gb|EEK57194.1| Flagellar M-ring protein fliF [Bacillus cereus BGSC 6E1]
 gi|228814321|gb|EEM60587.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228832895|gb|EEM78464.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|300375452|gb|ADK04356.1| flagellar M-ring protein [Bacillus cereus biovar anthracis str. CI]
          Length = 524

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 78/373 (20%), Positives = 170/373 (45%), Gaps = 35/373 (9%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           SL     L++ + +L   ++  A  +F     Y  +Y  L  +D   I+  LS+  +D++
Sbjct: 10  SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132
           ++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   +++ ++   
Sbjct: 68  LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124

Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189
            + LE +I R   ++     A V I +P+  + F +  A+ TA++ +      +  + + 
Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181

Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243
             I+ +++AAVP +   +V+V+DS   +++     A+    +   K + +   I+ +++ 
Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEVEMQHQIEGKLKQ 241

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           +I+  L      + ++      +N D     E+    +   ++ +  SK  Q   ++  E
Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355
            A T +Q     ++ +VP   +  N + K         +  NYEI+ K++ T   + +L 
Sbjct: 297 GAET-KQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEID-KTVETIKKHPELT 354

Query: 356 RLSIAVVVNKGRL 368
           + ++ V V+   L
Sbjct: 355 KTNVVVWVDNDTL 367


>gi|300117335|ref|ZP_07055125.1| flagellar MS-ring protein [Bacillus cereus SJ1]
 gi|298725170|gb|EFI65822.1| flagellar MS-ring protein [Bacillus cereus SJ1]
          Length = 520

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 78/373 (20%), Positives = 170/373 (45%), Gaps = 35/373 (9%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           SL     L++ + +L   ++  A  +F     Y  +Y  L  +D   I+  LS+  +D++
Sbjct: 10  SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132
           ++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   +++ ++   
Sbjct: 68  LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124

Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189
            + LE +I R   ++     A V I +P+  + F +  A+ TA++ +      +  + + 
Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181

Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243
             I+ +++AAVP +   +V+V+DS   +++     A+    +   K + +   I+ +++ 
Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEVEMQHQIEGKLKQ 241

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           +I+  L      + ++      +N D     E+    +   ++ +  SK  Q   ++  E
Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355
            A T +Q     ++ +VP   +  N + K         +  NYEI+ K++ T   + +L 
Sbjct: 297 GAET-KQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEID-KTVETIKKHPELT 354

Query: 356 RLSIAVVVNKGRL 368
           + ++ V V+   L
Sbjct: 355 KTNVVVWVDNDTL 367


>gi|217959230|ref|YP_002337778.1| flagellar MS-ring protein [Bacillus cereus AH187]
 gi|229138446|ref|ZP_04267035.1| Flagellar M-ring protein fliF [Bacillus cereus BDRD-ST26]
 gi|217064704|gb|ACJ78954.1| putative flagellar M-ring protein FliF [Bacillus cereus AH187]
 gi|228644983|gb|EEL01226.1| Flagellar M-ring protein fliF [Bacillus cereus BDRD-ST26]
          Length = 524

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 80/385 (20%), Positives = 177/385 (45%), Gaps = 38/385 (9%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +++L   F+S   L     L++++ +L   ++  A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKLKNVFQS---LKTWHKLVISAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +
Sbjct: 56  TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSS 112

Query: 124 SFMQEITRV----RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIR 178
              +++ ++    + LE +I R   ++     A V I +P+  + F +  A+ TA++ + 
Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVG 169

Query: 179 AINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSL 231
                +  + +   I+ +++AAVP +   +V+V+DS   +++     A+    +   K +
Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            +   I+ +++ +I+  L      + ++      +N D     E+    +   ++ +  S
Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRS 284

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTK 343
           K  Q   ++  E A T +Q     ++ +VP   +  N + K         +  NYEI+ K
Sbjct: 285 KQEQEESSTAQEGADT-KQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEID-K 342

Query: 344 SIATTHDNYKLERLSIAVVVNKGRL 368
           ++ T   + +L + ++ V V+   L
Sbjct: 343 TVETIKKHPELTKTNVVVWVDNDTL 367


>gi|324325764|gb|ADY21024.1| flagellar MS-ring protein [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 524

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 78/373 (20%), Positives = 169/373 (45%), Gaps = 35/373 (9%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           SL     L++ + +L   ++  A  +F     Y  +Y  L  +D   I+  LS+  +D++
Sbjct: 10  SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132
           ++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   +++ ++   
Sbjct: 68  LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124

Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189
            + LE +I R   ++     A V I +P+  + F +  A+ TA++ +      +  + + 
Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181

Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSLSIVQAIQHEIEM 243
             I+ +++AAVP +   +V+V+DS   +++    E +        K + +   I+ +++ 
Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHATSSSSYEKEVEMQHQIEGKLKQ 241

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           +I+  L      + ++      +N D     E+    +   ++ +  SK  Q   ++  E
Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355
            A T +Q     ++ +VP   +  N + K         +  NYEI+ K++ T   + +L 
Sbjct: 297 GADT-KQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEID-KTVETIKKHPELT 354

Query: 356 RLSIAVVVNKGRL 368
           + ++ V V+   L
Sbjct: 355 KTNVVVWVDNDTL 367


>gi|33596836|ref|NP_884479.1| putative type III secretion protein [Bordetella parapertussis
           12822]
 gi|33573537|emb|CAE37528.1| putative type III secretion protein [Bordetella parapertussis]
          Length = 274

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 18/161 (11%)

Query: 59  DVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
           + N +  AL EA I  +      G ++SVP+  V ++   L A GLP    +    +F K
Sbjct: 43  EANEVLAALLEAGIAAQKQSGKAGYAVSVPAEAVARSLEILRASGLPREQFDGMGRIFRK 102

Query: 117 VNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
                ++S ++E  R + AL  E+A T+  I G+++ARVH+V+P+ G+  +     TA V
Sbjct: 103 EGL--VSSPLEERARYIYALSQELADTLSQIDGVLSARVHVVLPERGAVGEPATPSTAGV 160

Query: 176 MIRAINPSVYKSAEA-------IRHLVAAAVPNLDMGDVTV 209
            ++      Y+  ++       IR LV  A+P L    V+V
Sbjct: 161 FLK------YRDGQSLDALVPEIRKLVTHAIPGLAEDRVSV 195


>gi|229029426|ref|ZP_04185509.1| Flagellar M-ring protein fliF [Bacillus cereus AH1271]
 gi|228731885|gb|EEL82784.1| Flagellar M-ring protein fliF [Bacillus cereus AH1271]
          Length = 524

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 80/385 (20%), Positives = 176/385 (45%), Gaps = 38/385 (9%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +++L   F+S   L     L++ + +L   ++  A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKLKNVFQS---LKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +
Sbjct: 56  TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSS 112

Query: 124 SFMQEITRV----RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIR 178
              +++ ++    + LE +I R   +I     A V I +P+  + F +  A+ TA++ + 
Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAAIE---TANVQITLPEKETIFDEEKAKGTAAITVG 169

Query: 179 AINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSL 231
                +  + +   ++ +++AAVP +   +V+V+DS   +++     A+    +   K +
Sbjct: 170 VKRGQLLTADQVAGVQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            +   I+ +++ +I+  L      + ++      +N D     E+    +   ++ +  S
Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRS 284

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTK 343
           K  Q   ++  E A T +Q     ++ +VP   +  N + K         +  NYEI+ K
Sbjct: 285 KQEQEESSTAQEGADT-KQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEID-K 342

Query: 344 SIATTHDNYKLERLSIAVVVNKGRL 368
           ++ T   + +L + ++ V V+   L
Sbjct: 343 TVETIKKHPELTKTNVVVWVDNDTL 367


>gi|33593247|ref|NP_880891.1| putative type III secretion protein [Bordetella pertussis Tohama I]
 gi|29603227|emb|CAC79572.1| bscJ [Bordetella pertussis Tohama I]
 gi|33563622|emb|CAE42523.1| putative type III secretion protein [Bordetella pertussis Tohama I]
 gi|332382656|gb|AEE67503.1| putative type III secretion protein [Bordetella pertussis CS]
          Length = 274

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 18/161 (11%)

Query: 59  DVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
           + N +  AL EA I  +      G ++SVP+  V ++   L A GLP    +    +F K
Sbjct: 43  EANEVLAALLEAGIAAQKQSGKAGYAVSVPAEAVARSLEILRASGLPREQFDGMGRIFRK 102

Query: 117 VNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
                ++S ++E  R + AL  E+A T+  I G+++ARVH+V+P+ G+  +     TA V
Sbjct: 103 EGL--VSSPLEERARYIYALSQELADTLSQIDGVLSARVHVVLPERGAVGEPATPSTAGV 160

Query: 176 MIRAINPSVYKSAEA-------IRHLVAAAVPNLDMGDVTV 209
            ++      Y+  ++       IR LV  A+P L    V+V
Sbjct: 161 FLK------YRDGQSLDALVPEIRKLVTHAIPGLAEDRVSV 195


>gi|229090707|ref|ZP_04221940.1| Flagellar M-ring protein fliF [Bacillus cereus Rock3-42]
 gi|228692649|gb|EEL46375.1| Flagellar M-ring protein fliF [Bacillus cereus Rock3-42]
          Length = 524

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 78/373 (20%), Positives = 169/373 (45%), Gaps = 35/373 (9%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           SL     L++ + +L   ++  A  +F     Y  +Y  L  +D   I+  LS+  +D++
Sbjct: 10  SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132
           ++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   +++ ++   
Sbjct: 68  LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124

Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189
            + LE +I R   ++     A V I +P+  + F +  A+ TA++ +      +  + + 
Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181

Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243
             I+ +++AAVP +   +V+V+DS   +++     A+        K + +   I+ +++ 
Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSTSYEKEVEMQHQIEGKLKQ 241

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           +I+  L      + ++      +N D     E+    +   ++ +  SK  Q   ++  E
Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355
            A T +Q     ++ +VP   +  N + K         +  NYEI+ K++ T   + +L 
Sbjct: 297 GAET-KQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEID-KTVETIKKHPELT 354

Query: 356 RLSIAVVVNKGRL 368
           + ++ V V+   L
Sbjct: 355 KTNVVVWVDNDTL 367


>gi|42780839|ref|NP_978086.1| flagellar MS-ring protein [Bacillus cereus ATCC 10987]
 gi|42736759|gb|AAS40694.1| flagellar M-ring protein [Bacillus cereus ATCC 10987]
          Length = 524

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 80/385 (20%), Positives = 175/385 (45%), Gaps = 38/385 (9%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +++L   F+S   L     L++ + +L   ++  A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKLKNVFQS---LKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +
Sbjct: 56  TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSS 112

Query: 124 SFMQEITRV----RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIR 178
              +++ ++    + LE +I R   ++     A V I +P+  + F +  A+ TA++ + 
Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVG 169

Query: 179 AINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSL 231
                +  + +   I+ +++AAVP +   +V+V+DS   +++    E +        K +
Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHATSSSSYEKEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            +   I+ +++ +I+  L      + ++      +N D     E+    +   ++ +  S
Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRS 284

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTK 343
           K  Q   ++  E A T +Q     ++ +VP   +  N + K         +  NYEI+ K
Sbjct: 285 KQEQEESSTAQEGADT-KQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEID-K 342

Query: 344 SIATTHDNYKLERLSIAVVVNKGRL 368
           ++ T   + +L + ++ V V+   L
Sbjct: 343 TVETIKKHPELTKTNVVVWVDNDTL 367


>gi|75761142|ref|ZP_00741134.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218896679|ref|YP_002445090.1| putative flagellar M-ring protein FliF [Bacillus cereus G9842]
 gi|228900328|ref|ZP_04064558.1| Flagellar M-ring protein fliF [Bacillus thuringiensis IBL 4222]
 gi|74491370|gb|EAO54594.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218541808|gb|ACK94202.1| putative flagellar M-ring protein FliF [Bacillus cereus G9842]
 gi|228859363|gb|EEN03793.1| Flagellar M-ring protein fliF [Bacillus thuringiensis IBL 4222]
          Length = 525

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 75/368 (20%), Positives = 168/368 (45%), Gaps = 25/368 (6%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           SL     L++ + +L   ++  A  +F     Y  +Y  L  +D   I+  LS+  +D++
Sbjct: 10  SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDTDKQEITAELSKLGVDYQ 67

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132
           ++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   +++ ++   
Sbjct: 68  LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124

Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189
            + LE +I R   ++     A V I +P+  + F +  A+ TA++ +      +  + + 
Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181

Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243
             I+ +++AAVP +   +V+V+DS   +++     A+    +   K + +   ++ +++ 
Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEVEMQHQLEGKLKQ 241

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD---AQRSETS 300
           +I+  L      + ++      +N D +  R+     D  V RS +  ++   AQ    +
Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-EVTRQSEKYGDKGVLRSKQEQEESSTAQEGTDT 300

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           +  + +T    +P+         + + N     +  NYEI+ K++ T   + +L + ++ 
Sbjct: 301 KQSAGITANGEVPNYGTNNNQNGKVVYNNKNGNKIENYEID-KTVETIKKHPELTKTNVV 359

Query: 361 VVVNKGRL 368
           V V+   L
Sbjct: 360 VWVDNDTL 367


>gi|228907379|ref|ZP_04071237.1| Flagellar M-ring protein fliF [Bacillus thuringiensis IBL 200]
 gi|228852240|gb|EEM97036.1| Flagellar M-ring protein fliF [Bacillus thuringiensis IBL 200]
          Length = 524

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 77/373 (20%), Positives = 170/373 (45%), Gaps = 35/373 (9%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           SL     L++ + +L   ++  A  +F     Y  +Y  L  +D   I+  LS+  +D++
Sbjct: 10  SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDTDKQEITAELSKLGVDYQ 67

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132
           ++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   +++ ++   
Sbjct: 68  LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124

Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189
            + LE +I R   ++     A V I +P+  + F +  A+ TA++ +      +  + + 
Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181

Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243
             I+ +++AAVP +   +V+V+DS   +++     A+    +   K + +   ++ +++ 
Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGTDEAHSSSSSSYEKEVEMQHQLEGKLKQ 241

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           +I+  L      + ++      +N D     E+    +   ++ +  SK  Q   ++  E
Sbjct: 242 DIDATLMTMFKSNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355
            A T +Q     ++ +VP   +  N + K         +  NYEI+ K++ T   + +L 
Sbjct: 297 GADT-KQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEID-KTVETIKKHPELT 354

Query: 356 RLSIAVVVNKGRL 368
           + ++ V V+   L
Sbjct: 355 KTNVVVWVDNDTL 367


>gi|313905127|ref|ZP_07838496.1| flagellar M-ring protein FliF [Eubacterium cellulosolvens 6]
 gi|313470030|gb|EFR65363.1| flagellar M-ring protein FliF [Eubacterium cellulosolvens 6]
          Length = 563

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/289 (21%), Positives = 128/289 (44%), Gaps = 25/289 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFV----NSPHYDNLYVKLE 56
           M IL++L + ++  +++ R R+LI   ++LV  + F+A    +     +  Y  L+  L 
Sbjct: 1   MKILNKLKETWQQLSAMAR-RLLI---IVLVGAVAFVAIGIVLLNQKKTTEYTTLFTGLN 56

Query: 57  VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
             +   I   + E    +       +I VP     K R  + ++G P S     Y ++  
Sbjct: 57  QEESREIVSMIQEEGKQYLYDAGSGTIQVPVEQADKLRAEILSKGYPQSGFT--YSMYVG 114

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF------------ 164
            +    T   +E   +  L+  +  TI+   G+  A+V I   D   +            
Sbjct: 115 NSGIMATESDKEQYTLYDLQDRLGATIRLFDGVRDAKVTIAQADDDGYVLDEDGDTKSNS 174

Query: 165 -RKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLD-STGKLLTANEM 222
              + A  +  V ++  +    K+A+AIR+LVA +V  ++  +V+V D +T + +  N  
Sbjct: 175 DDDVNASASVVVTMKRGSELTEKNADAIRNLVARSVRGINFTNVSVFDAATMQEIGGNAD 234

Query: 223 ERNILGKSLS-IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDT 270
           + +   ++++ + + +++ I  N+ K LA    ++N   AV  +L+  T
Sbjct: 235 DESANSEAVNELTKQVENNIAANVKKVLAKLYHMENVEVAVRGKLDTST 283


>gi|229069298|ref|ZP_04202588.1| Flagellar M-ring protein fliF [Bacillus cereus F65185]
 gi|228713785|gb|EEL65670.1| Flagellar M-ring protein fliF [Bacillus cereus F65185]
          Length = 524

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 77/373 (20%), Positives = 170/373 (45%), Gaps = 35/373 (9%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           SL     L++ + +L   ++  A  +F     Y  +Y  L  +D   I+  LS+  +D++
Sbjct: 10  SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDTDKQEITAELSKLGVDYQ 67

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132
           ++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   +++ ++   
Sbjct: 68  LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124

Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189
            + LE +I R   ++     A V I +P+  + F +  A+ TA++ +      +  + + 
Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181

Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243
             I+ +++AAVP +   +V+V+DS   +++     A+    +   K + +   ++ +++ 
Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGTDEAHSSSSSSYEKEVEMQHQLEGKLKQ 241

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           +I+  L      + ++      +N D     E+    +   ++ +  SK  Q   ++  E
Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355
            A T +Q     ++ +VP   +  N + K         +  NYEI+ K++ T   + +L 
Sbjct: 297 GADT-KQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEID-KTVETIKKHPELT 354

Query: 356 RLSIAVVVNKGRL 368
           + ++ V V+   L
Sbjct: 355 KTNVVVWVDNDTL 367


>gi|218232102|ref|YP_002366431.1| flagellar MS-ring protein [Bacillus cereus B4264]
 gi|218160059|gb|ACK60051.1| putative flagellar M-ring protein FliF [Bacillus cereus B4264]
          Length = 524

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 77/373 (20%), Positives = 170/373 (45%), Gaps = 35/373 (9%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           SL     L++ + +L   ++  A  +F     Y  +Y  L  +D   I+  LS+  +D++
Sbjct: 10  SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDTDKQEITAELSKLGVDYQ 67

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132
           ++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   +++ ++   
Sbjct: 68  LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124

Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189
            + LE +I R   ++     A V I +P+  + F +  A+ TA++ +      +  + + 
Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181

Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243
             I+ +++AAVP +   +V+V+DS   +++     A+    +   K + +   ++ +++ 
Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEVEMQHQLEGKLKQ 241

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           +I+  L      + ++      +N D     E+    +   ++ +  SK  Q   ++  E
Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355
            A T +Q     ++ +VP   +  N + K         +  NYEI+ K++ T   + +L 
Sbjct: 297 GADT-KQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEID-KTVETIKKHPELT 354

Query: 356 RLSIAVVVNKGRL 368
           + ++ V V+   L
Sbjct: 355 KTNVVVWVDNDTL 367


>gi|229189843|ref|ZP_04316854.1| Flagellar M-ring protein fliF [Bacillus cereus ATCC 10876]
 gi|228593651|gb|EEK51459.1| Flagellar M-ring protein fliF [Bacillus cereus ATCC 10876]
          Length = 524

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 77/373 (20%), Positives = 170/373 (45%), Gaps = 35/373 (9%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           SL     L++ + +L   ++  A  +F     Y  +Y  L  +D   I+  LS+  +D++
Sbjct: 10  SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDTDKQEITAELSKLGVDYQ 67

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132
           ++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   +++ ++   
Sbjct: 68  LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124

Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189
            + LE +I R   ++     A V I +P+  + F +  A+ TA++ +      +  + + 
Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181

Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243
             I+ +++AAVP +   +V+V+DS   +++     A+    +   K + +   ++ +++ 
Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEVEMQHQLEGKLKQ 241

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           +I+  L      + ++      +N D     E+    +   ++ +  SK  Q   ++  E
Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355
            A T +Q     ++ +VP   +  N + K         +  NYEI+ K++ T   + +L 
Sbjct: 297 GADT-KQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEID-KTVETIKKHPELT 354

Query: 356 RLSIAVVVNKGRL 368
           + ++ V V+   L
Sbjct: 355 KTNVVVWVDNDTL 367


>gi|206970714|ref|ZP_03231666.1| putative flagellar M-ring protein FliF [Bacillus cereus AH1134]
 gi|228964729|ref|ZP_04125836.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|229178155|ref|ZP_04305526.1| Flagellar M-ring protein fliF [Bacillus cereus 172560W]
 gi|206734350|gb|EDZ51520.1| putative flagellar M-ring protein FliF [Bacillus cereus AH1134]
 gi|228605285|gb|EEK62735.1| Flagellar M-ring protein fliF [Bacillus cereus 172560W]
 gi|228794979|gb|EEM42478.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar sotto
           str. T04001]
          Length = 524

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 77/373 (20%), Positives = 170/373 (45%), Gaps = 35/373 (9%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           SL     L++ + +L   ++  A  +F     Y  +Y  L  +D   I+  LS+  +D++
Sbjct: 10  SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDTDKQEITAELSKLGVDYQ 67

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132
           ++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   +++ ++   
Sbjct: 68  LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124

Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189
            + LE +I R   ++     A V I +P+  + F +  A+ TA++ +      +  + + 
Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181

Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243
             I+ +++AAVP +   +V+V+DS   +++     A+    +   K + +   ++ +++ 
Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEVEMQHQLEGKLKQ 241

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           +I+  L      + ++      +N D     E+    +   ++ +  SK  Q   ++  E
Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355
            A T +Q     ++ +VP   +  N + K         +  NYEI+ K++ T   + +L 
Sbjct: 297 GADT-KQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEID-KTVETIKKHPELT 354

Query: 356 RLSIAVVVNKGRL 368
           + ++ V V+   L
Sbjct: 355 KTNVVVWVDNDTL 367


>gi|229195959|ref|ZP_04322712.1| Flagellar M-ring protein fliF [Bacillus cereus m1293]
 gi|228587518|gb|EEK45583.1| Flagellar M-ring protein fliF [Bacillus cereus m1293]
          Length = 524

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 80/384 (20%), Positives = 172/384 (44%), Gaps = 36/384 (9%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +++L   F+S   L     L++ + +L   ++  A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKLKNVFQS---LKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF--DKVNSFG 121
           +  LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+     + S  
Sbjct: 56  TAELSKLGVDYQLATDG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLESSLGSSE 113

Query: 122 LTSFMQEITRVRA-LEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRA 179
               M++I   +  LE +I R   ++     A V I +P+  + F +  A+ TA++ +  
Sbjct: 114 QDKRMKQIVGTKKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGV 170

Query: 180 INPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLS 232
               +  + +   ++ +++AAVP +   +V+V+DS   +++     A+    +   K + 
Sbjct: 171 KRGQLLMADQVAGVQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEVE 230

Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292
           +   I+ +++ +I+  L      + ++      +N D     E+    +   ++ +  SK
Sbjct: 231 MQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSK 285

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKS 344
             Q   ++  E A T +Q     ++ +VP   +  N + K         +  NYEI+ K+
Sbjct: 286 QEQEESSTAQEGADT-KQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEID-KT 343

Query: 345 IATTHDNYKLERLSIAVVVNKGRL 368
           + T   + +L + ++ V V+   L
Sbjct: 344 VETIKKHPELTKTNVVVWVDNDTL 367


>gi|228958026|ref|ZP_04119762.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228801651|gb|EEM48532.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 524

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 77/373 (20%), Positives = 170/373 (45%), Gaps = 35/373 (9%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           SL     L++ + +L   ++  A  +F     Y  +Y  L  +D   I+  LS+  +D++
Sbjct: 10  SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132
           ++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   +++ ++   
Sbjct: 68  LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124

Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189
            + LE +I R   ++     A V I +P+  + F +  A+ TA++ +      +  + + 
Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181

Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243
             I+ +++AAVP +   +V+V+DS   +++     A+    +   K + +   ++ +++ 
Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEVEMQHQLEGKLKQ 241

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           +I+  L      + ++      +N D     E+    +   ++ +  SK  Q   ++  E
Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355
            A T +Q     ++ +VP   +  N + K         +  NYEI+ K++ T   + +L 
Sbjct: 297 GADT-KQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEID-KTVETIKKHPELT 354

Query: 356 RLSIAVVVNKGRL 368
           + ++ V V+   L
Sbjct: 355 KTNVVVWVDNDTL 367


>gi|167924750|ref|ZP_02511841.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei BCC215]
          Length = 243

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 12/167 (7%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSMVGKARIHLAAQGLPSSS 106
           LY  L   D N +  AL +  +D   +  D G +  ++V    + KA   L A+GLP++ 
Sbjct: 38  LYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPATR 97

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMGS 163
            +    LF K    GL S   E  RVR + G   E++ T+  I G+V ARVHIV+P+   
Sbjct: 98  YDDLGALFKK---DGLVSTPTE-ERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDP 153

Query: 164 FRKIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209
             ++    +ASV I+   N ++      I++LV  +V  L   +V+V
Sbjct: 154 LAQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSV 200


>gi|167907276|ref|ZP_02494481.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei NCTC 13177]
          Length = 244

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 12/167 (7%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSMVGKARIHLAAQGLPSSS 106
           LY  L   D N +  AL +  +D   +  D G +  ++V    + KA   L A+GLP++ 
Sbjct: 38  LYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPATR 97

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMGS 163
            +    LF K    GL S   E  RVR + G   E++ T+  I G+V ARVHIV+P+   
Sbjct: 98  YDDLGALFKK---DGLVSTPTE-ERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDP 153

Query: 164 FRKIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209
             ++    +ASV I+   N ++      I++LV  +V  L   +V+V
Sbjct: 154 LAQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSV 200


>gi|167850348|ref|ZP_02475856.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei B7210]
          Length = 242

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 12/167 (7%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSMVGKARIHLAAQGLPSSS 106
           LY  L   D N +  AL +  +D   +  D G +  ++V    + KA   L A+GLP++ 
Sbjct: 38  LYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPATR 97

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMGS 163
            +    LF K    GL S   E  RVR + G   E++ T+  I G+V ARVHIV+P+   
Sbjct: 98  YDDLGALFKK---DGLVSTPTE-ERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDP 153

Query: 164 FRKIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209
             ++    +ASV I+   N ++      I++LV  +V  L   +V+V
Sbjct: 154 LAQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSV 200


>gi|228920457|ref|ZP_04083802.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228839087|gb|EEM84383.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 524

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 77/373 (20%), Positives = 170/373 (45%), Gaps = 35/373 (9%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           SL     L++ + +L   ++  A  +F     Y  +Y  L  +D   I+  LS+  +D++
Sbjct: 10  SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132
           ++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   +++ ++   
Sbjct: 68  LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124

Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189
            + LE +I R   ++     A V I +P+  + F +  A+ TA++ +      +  + + 
Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181

Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243
             I+ +++AAVP +   +V+V+DS   +++     A+    +   K + +   ++ +++ 
Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEVEMQHQLEGKLKQ 241

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           +I+  L      + ++      +N D     E+    +   ++ +  SK  Q   ++  E
Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355
            A T +Q     ++ +VP   +  N + K         +  NYEI+ K++ T   + +L 
Sbjct: 297 GADT-KQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEID-KTVETIKKHPELT 354

Query: 356 RLSIAVVVNKGRL 368
           + ++ V V+   L
Sbjct: 355 KTNVVVWVDNDTL 367


>gi|228952126|ref|ZP_04114221.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228807658|gb|EEM54182.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 524

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 76/369 (20%), Positives = 169/369 (45%), Gaps = 35/369 (9%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           SL     L++ + +L   ++  A  +F     Y  +Y  L  +D   I+  LS+  +D++
Sbjct: 10  SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132
           ++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   +++ ++   
Sbjct: 68  LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124

Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189
            + LE +I R   ++     A V I +P+  + F +  A+ TA++ +      +  + + 
Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181

Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243
             I+ +++AAVP +   +V+V+DS   +++     A+    +   K + +   ++ +++ 
Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEVEMQHQLEGKLKQ 241

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           +I+  L      + ++      +N D     E+    +   ++ +  SK  Q   ++  E
Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355
            A T +Q     ++ +VP   +  N + K         +  NYEI+ K++ T   + +L 
Sbjct: 297 GADT-KQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEID-KTVETIKKHPELT 354

Query: 356 RLSIAVVVN 364
           + ++ V V+
Sbjct: 355 KTNVVVWVD 363


>gi|229149948|ref|ZP_04278176.1| Flagellar M-ring protein fliF [Bacillus cereus m1550]
 gi|228633629|gb|EEK90230.1| Flagellar M-ring protein fliF [Bacillus cereus m1550]
          Length = 524

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 77/373 (20%), Positives = 170/373 (45%), Gaps = 35/373 (9%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           SL     L++ + +L   ++  A  +F     Y  +Y  L  +D   I+  LS+  +D++
Sbjct: 10  SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132
           ++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   +++ ++   
Sbjct: 68  LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124

Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189
            + LE +I R   ++     A V I +P+  + F +  A+ TA++ +      +  + + 
Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181

Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243
             I+ +++AAVP +   +V+V+DS   +++     A+    +   K + +   ++ +++ 
Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGTDEAHSSSSSSYEKEVEMQHQLEGKLKQ 241

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           +I+  L      + ++      +N D     E+    +   ++ +  SK  Q   ++  E
Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355
            A T +Q     ++ +VP   +  N + K         +  NYEI+ K++ T   + +L 
Sbjct: 297 GADT-KQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEID-KTVETIKKHPELT 354

Query: 356 RLSIAVVVNKGRL 368
           + ++ V V+   L
Sbjct: 355 KTNVVVWVDNDTL 367


>gi|167743335|ref|ZP_02416109.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 14]
          Length = 230

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 12/167 (7%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSMVGKARIHLAAQGLPSSS 106
           LY  L   D N +  AL +  +D   +  D G +  ++V    + KA   L A+GLP++ 
Sbjct: 38  LYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPATR 97

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMGS 163
            +    LF K    GL S   E  RVR + G   E++ T+  I G+V ARVHIV+P+   
Sbjct: 98  YDDLGALFKK---DGLVSTPTE-ERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDP 153

Query: 164 FRKIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209
             ++    +ASV I+   N ++      I++LV  +V  L   +V+V
Sbjct: 154 LAQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSV 200


>gi|229166587|ref|ZP_04294339.1| Flagellar M-ring protein fliF [Bacillus cereus AH621]
 gi|228616841|gb|EEK73914.1| Flagellar M-ring protein fliF [Bacillus cereus AH621]
          Length = 524

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 78/373 (20%), Positives = 169/373 (45%), Gaps = 35/373 (9%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           SL     L++ + +L   +   A  +F     Y  +Y  L  +D   I+  LS+  +D++
Sbjct: 10  SLKTWHKLVIGAALLA--IATGALLYFTLPDKYVVVYQNLNDTDKQEITAELSKLGVDYQ 67

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132
           ++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   +++ ++   
Sbjct: 68  LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124

Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189
            + LE +I R   ++     A V I +P+  + F +  A+ TA++ +      +  + + 
Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181

Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243
             I+ +++AAVP +   +V+V+DS   +++     A+    +   K + +   I+ +++ 
Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGIISKGTDEAHSNSSSSYEKEVEMQHQIEGKLKQ 241

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           +I+  L      + ++      +N D     E+    +   ++ +  SK  Q   ++  E
Sbjct: 242 DIDATLMTMFKSNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355
            A T +Q     ++ +VP   +  N + K         +  NYEI+ K++ T   + +L 
Sbjct: 297 GADT-KQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEID-KTVETIKKHPELT 354

Query: 356 RLSIAVVVNKGRL 368
           + ++ V V+   L
Sbjct: 355 KTNVVVWVDNDTL 367


>gi|229078928|ref|ZP_04211480.1| Flagellar M-ring protein fliF [Bacillus cereus Rock4-2]
 gi|228704342|gb|EEL56776.1| Flagellar M-ring protein fliF [Bacillus cereus Rock4-2]
          Length = 524

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 77/373 (20%), Positives = 170/373 (45%), Gaps = 35/373 (9%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           SL     L++ + +L   ++  A  +F     Y  +Y  L  +D   I+  LS+  +D++
Sbjct: 10  SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132
           ++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   +++ ++   
Sbjct: 68  LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124

Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189
            + LE +I R   ++     A V I +P+  + F +  A+ TA++ +      +  + + 
Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181

Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243
             I+ +++AAVP +   +V+V+DS   +++     A+    +   K + +   ++ +++ 
Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEVEMQHQLEGKLKQ 241

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           +I+  L      + ++      +N D     E+    +   ++ +  SK  Q   ++  E
Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355
            A T +Q     ++ +VP   +  N + K         +  NYEI+ K++ T   + +L 
Sbjct: 297 GADT-KQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEID-KTVETIKKHPELT 354

Query: 356 RLSIAVVVNKGRL 368
           + ++ V V+   L
Sbjct: 355 KTNVVVWVDNDTL 367


>gi|228938860|ref|ZP_04101460.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228971741|ref|ZP_04132362.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978350|ref|ZP_04138727.1| Flagellar M-ring protein fliF [Bacillus thuringiensis Bt407]
 gi|228781367|gb|EEM29568.1| Flagellar M-ring protein fliF [Bacillus thuringiensis Bt407]
 gi|228787831|gb|EEM35789.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228820709|gb|EEM66734.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326939360|gb|AEA15256.1| flagellar MS-ring protein [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 524

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 77/373 (20%), Positives = 170/373 (45%), Gaps = 35/373 (9%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           SL     L++ + +L   ++  A  +F     Y  +Y  L  +D   I+  LS+  +D++
Sbjct: 10  SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDTDKQEITAELSKLGVDYQ 67

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132
           ++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   +++ ++   
Sbjct: 68  LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124

Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189
            + LE +I R   ++     A V I +P+  + F +  A+ TA++ +      +  + + 
Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181

Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243
             I+ +++AAVP +   +V+V+DS   +++     A+    +   K + +   ++ +++ 
Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGTDEAHSSSSSSYEKEVEMQHQLEGKLKQ 241

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           +I+  L      + ++      +N D     E+    +   ++ +  SK  Q   ++  E
Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355
            A T +Q     ++ +VP   +  N + K         +  NYEI+ K++ T   + +L 
Sbjct: 297 GADT-KQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEID-KTVETIKKHPELT 354

Query: 356 RLSIAVVVNKGRL 368
           + ++ V V+   L
Sbjct: 355 KTNVVVWVDNDTL 367


>gi|229043500|ref|ZP_04191210.1| Flagellar M-ring protein fliF [Bacillus cereus AH676]
 gi|228725878|gb|EEL77125.1| Flagellar M-ring protein fliF [Bacillus cereus AH676]
          Length = 524

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 77/373 (20%), Positives = 170/373 (45%), Gaps = 35/373 (9%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           SL     L++ + +L   ++  A  +F     Y  +Y  L  +D   I+  LS+  +D++
Sbjct: 10  SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132
           ++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   +++ ++   
Sbjct: 68  LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124

Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189
            + LE +I R   ++     A V I +P+  + F +  A+ TA++ +      +  + + 
Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181

Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243
             I+ +++AAVP +   +V+V+DS   +++     A+    +   K + +   ++ +++ 
Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEVEMQHQLEGKLKQ 241

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           +I+  L      + ++      +N D     E+    +   ++ +  SK  Q   ++  E
Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355
            A T +Q     ++ +VP   +  N + K         +  NYEI+ K++ T   + +L 
Sbjct: 297 GADT-KQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEID-KTVETIKKHPELT 354

Query: 356 RLSIAVVVNKGRL 368
           + ++ V V+   L
Sbjct: 355 KTNVVVWVDNDTL 367


>gi|30019791|ref|NP_831422.1| flagellar MS-ring protein [Bacillus cereus ATCC 14579]
 gi|229127072|ref|ZP_04256071.1| Flagellar M-ring protein fliF [Bacillus cereus BDRD-Cer4]
 gi|229144358|ref|ZP_04272764.1| Flagellar M-ring protein fliF [Bacillus cereus BDRD-ST24]
 gi|29895336|gb|AAP08623.1| Flagellar M-ring protein fliF [Bacillus cereus ATCC 14579]
 gi|228639145|gb|EEK95569.1| Flagellar M-ring protein fliF [Bacillus cereus BDRD-ST24]
 gi|228656425|gb|EEL12264.1| Flagellar M-ring protein fliF [Bacillus cereus BDRD-Cer4]
          Length = 524

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 77/373 (20%), Positives = 170/373 (45%), Gaps = 35/373 (9%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           SL     L++ + +L   ++  A  +F     Y  +Y  L  +D   I+  LS+  +D++
Sbjct: 10  SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132
           ++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   +++ ++   
Sbjct: 68  LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124

Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189
            + LE +I R   ++     A V I +P+  + F +  A+ TA++ +      +  + + 
Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181

Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243
             I+ +++AAVP +   +V+V+DS   +++     A+    +   K + +   ++ +++ 
Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEVEMQHQLEGKLKQ 241

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           +I+  L      + ++      +N D     E+    +   ++ +  SK  Q   ++  E
Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355
            A T +Q     ++ +VP   +  N + K         +  NYEI+ K++ T   + +L 
Sbjct: 297 GADT-KQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEID-KTVETIKKHPELT 354

Query: 356 RLSIAVVVNKGRL 368
           + ++ V V+   L
Sbjct: 355 KTNVVVWVDNDTL 367


>gi|229109203|ref|ZP_04238802.1| Flagellar M-ring protein fliF [Bacillus cereus Rock1-15]
 gi|228674213|gb|EEL29458.1| Flagellar M-ring protein fliF [Bacillus cereus Rock1-15]
          Length = 524

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 77/373 (20%), Positives = 170/373 (45%), Gaps = 35/373 (9%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           SL     L++ + +L   ++  A  +F     Y  +Y  L  +D   I+  LS+  +D++
Sbjct: 10  SLKMWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132
           ++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   +++ ++   
Sbjct: 68  LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124

Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189
            + LE +I R   ++     A V I +P+  + F +  A+ TA++ +      +  + + 
Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181

Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243
             I+ +++AAVP +   +V+V+DS   +++     A+    +   K + +   ++ +++ 
Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEVEMQHQLEGKLKQ 241

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           +I+  L      + ++      +N D     E+    +   ++ +  SK  Q   ++  E
Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355
            A T +Q     ++ +VP   +  N + K         +  NYEI+ K++ T   + +L 
Sbjct: 297 GADT-KQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEID-KTVETIKKHPELT 354

Query: 356 RLSIAVVVNKGRL 368
           + ++ V V+   L
Sbjct: 355 KTNVVVWVDNDTL 367


>gi|134282063|ref|ZP_01768769.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 305]
 gi|134246592|gb|EBA46680.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 305]
          Length = 284

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 88/185 (47%), Gaps = 20/185 (10%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSS 88
           + LF   R          LY  L   D N +  AL +  +D   +  D+G +  ++V   
Sbjct: 28  VALFAGCR--------QELYGGLAERDCNEMMAALLQNGVDAQKKTPDDGKTWTLAVDDK 79

Query: 89  MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQS 145
            + KA   L A+GLP++  +    LF K    GL S   E  RVR + G   E++ T+  
Sbjct: 80  QIVKAMEVLRARGLPATRYDDLGALFKK---DGLVSTPTE-ERVRFIYGVSQELSDTLSK 135

Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDM 204
           I G+V ARVHIV+P+     ++    +ASV I+   N ++      I++LV  +V  L  
Sbjct: 136 IDGVVVARVHIVLPNNDPLAQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTY 195

Query: 205 GDVTV 209
            +V+V
Sbjct: 196 DEVSV 200


>gi|118477182|ref|YP_894333.1| flagellar MS-ring protein [Bacillus thuringiensis str. Al Hakam]
 gi|118416407|gb|ABK84826.1| flagellar M-ring protein [Bacillus thuringiensis str. Al Hakam]
          Length = 524

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 78/373 (20%), Positives = 170/373 (45%), Gaps = 35/373 (9%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           SL     L++ + +L   ++  A  +F     Y  +Y  L  +D   I+  LS+  +D++
Sbjct: 10  SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKLEITAELSKLGVDYQ 67

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132
           ++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   +++ ++   
Sbjct: 68  LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124

Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189
            + LE +I R   ++     A V I +P+  + F +  A+ TA++ +      +  + + 
Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181

Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243
             I+ +++AAVP +   +V+V+DS   +++     A+    +   K + +   I+ +++ 
Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEVEMQHQIEGKLKQ 241

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           +I+  L      + ++      +N D     E+    +   ++ +  SK  Q   ++  E
Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355
            A T +Q     ++ +VP   +  N + K         +  NYEI+ K++ T   + +L 
Sbjct: 297 GAET-KQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEID-KTVETIKKHPELT 354

Query: 356 RLSIAVVVNKGRL 368
           + ++ V V+   L
Sbjct: 355 KTNVVVWVDNDTL 367


>gi|296502346|ref|YP_003664046.1| flagellar MS-ring protein [Bacillus thuringiensis BMB171]
 gi|296323398|gb|ADH06326.1| flagellar MS-ring protein [Bacillus thuringiensis BMB171]
          Length = 524

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 77/373 (20%), Positives = 170/373 (45%), Gaps = 35/373 (9%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           SL     L++ + +L   ++  A  +F     Y  +Y  L  +D   I+  LS+  +D++
Sbjct: 10  SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132
           ++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   +++ ++   
Sbjct: 68  LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124

Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189
            + LE +I R   ++     A V I +P+  + F +  A+ TA++ +      +  + + 
Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181

Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243
             I+ +++AAVP +   +V+V+DS   +++     A+    +   K + +   ++ +++ 
Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEVEMQHQLEGKLKQ 241

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           +I+  L      + ++      +N D     E+    +   ++ +  SK  Q   ++  E
Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQEESSTAQE 296

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTHDNYKLE 355
            A T +Q     ++ +VP   +  N + K         +  NYEI+ K++ T   + +L 
Sbjct: 297 GADT-KQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEID-KTVETIKKHPELT 354

Query: 356 RLSIAVVVNKGRL 368
           + ++ V V+   L
Sbjct: 355 KTNVVVWVDNDTL 367


>gi|167820515|ref|ZP_02452195.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 91]
 gi|167828888|ref|ZP_02460359.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 9]
          Length = 235

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 12/167 (7%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSMVGKARIHLAAQGLPSSS 106
           LY  L   D N +  AL +  +D   +  D G +  ++V    + KA   L A+GLP++ 
Sbjct: 38  LYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPATR 97

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMGS 163
            +    LF K    GL S   E  RVR + G   E++ T+  I G+V ARVHIV+P+   
Sbjct: 98  YDDLGALFKK---DGLVSTPTE-ERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDP 153

Query: 164 FRKIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209
             ++    +ASV I+   N ++      I++LV  +V  L   +V+V
Sbjct: 154 LAQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSV 200


>gi|167584002|ref|ZP_02376390.1| lipoprotein transmembrane protein [Burkholderia ubonensis Bu]
          Length = 227

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 12/167 (7%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSMVGKARIHLAAQGLPSSS 106
           LY  L   D N +  AL +  +D   +  D G +  ++V    + KA   L A+GLP++ 
Sbjct: 24  LYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPATR 83

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMGS 163
            +    LF K    GL S   E  RVR + G   E++ T+  I G+V ARVHIV+P+   
Sbjct: 84  YDDLGALFKK---DGLVSTPTE-ERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDP 139

Query: 164 FRKIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209
             ++    +ASV I+   N ++      I++LV  +V  L   +V+V
Sbjct: 140 LAQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSV 186


>gi|47566129|ref|ZP_00237167.1| flagellar M-ring protein, putative [Bacillus cereus G9241]
 gi|47557046|gb|EAL15376.1| flagellar M-ring protein, putative [Bacillus cereus G9241]
          Length = 515

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 77/365 (21%), Positives = 167/365 (45%), Gaps = 28/365 (7%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
           SL     L++ + +L   ++  A  +F     Y  +Y  L  +D   I+  LS+  +D++
Sbjct: 10  SLKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQ 67

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV--- 132
           ++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   +++ ++   
Sbjct: 68  LAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSSEQDKKMKQIVGT 124

Query: 133 -RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKSAE- 189
            + LE +I R   ++     A V I +P+  + F +  A+ TA++ +      +  + + 
Sbjct: 125 KKQLEQDIVRNFATVE---TANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQV 181

Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243
             I+ +++AAVP +   +V+V+DS   +++     A+    +   K + +   I+ +++ 
Sbjct: 182 AGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEVEMQHQIEGKLKQ 241

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           +I+  L      + ++      +N D     E+    +   ++ +  SK  Q  ETS  +
Sbjct: 242 DIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRSKQEQE-ETSTAQ 295

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
                +Q     ++ +VP   +  N     +  NYEI+ K++ T   + +L + ++ V V
Sbjct: 296 EGADTKQGAGITANGEVPNYGTNNNK-NGNKIENYEID-KTVETIKKHPELTKTNVVVWV 353

Query: 364 NKGRL 368
           +   L
Sbjct: 354 DNDTL 358


>gi|167724370|ref|ZP_02407606.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei DM98]
          Length = 236

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 12/167 (7%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSMVGKARIHLAAQGLPSSS 106
           LY  L   D N +  AL +  +D   +  D G +  ++V    + KA   L A+GLP++ 
Sbjct: 38  LYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPATR 97

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMGS 163
            +    LF K    GL S   E  RVR + G   E++ T+  I G+V ARVHIV+P+   
Sbjct: 98  YDDLGALFKK---DGLVSTPTE-ERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDP 153

Query: 164 FRKIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209
             ++    +ASV I+   N ++      I++LV  +V  L   +V+V
Sbjct: 154 LAQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSV 200


>gi|167898945|ref|ZP_02486346.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 7894]
          Length = 235

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 12/167 (7%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSMVGKARIHLAAQGLPSSS 106
           LY  L   D N +  AL +  +D   +  D G +  ++V    + KA   L A+GLP++ 
Sbjct: 38  LYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPATR 97

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMGS 163
            +    LF K    GL S   E  RVR + G   E++ T+  I G+V ARVHIV+P+   
Sbjct: 98  YDDLGALFKK---DGLVSTPTE-ERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDP 153

Query: 164 FRKIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209
             ++    +ASV I+   N ++      I++LV  +V  L   +V+V
Sbjct: 154 LAQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSV 200


>gi|167915637|ref|ZP_02502728.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 112]
          Length = 239

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 12/167 (7%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSMVGKARIHLAAQGLPSSS 106
           LY  L   D N +  AL +  +D   +  D G +  ++V    + KA   L A+GLP++ 
Sbjct: 38  LYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPATR 97

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMGS 163
            +    LF K    GL S   E  RVR + G   E++ T+  I G+V ARVHIV+P+   
Sbjct: 98  YDDLGALFKK---DGLVSTPTE-ERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDP 153

Query: 164 FRKIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209
             ++    +ASV I+   N ++      I++LV  +V  L   +V+V
Sbjct: 154 LAQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSV 200


>gi|238916746|ref|YP_002930263.1| flagellar M-ring protein FliF [Eubacterium eligens ATCC 27750]
 gi|238872106|gb|ACR71816.1| flagellar M-ring protein FliF [Eubacterium eligens ATCC 27750]
          Length = 536

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 132/281 (46%), Gaps = 24/281 (8%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           +LL+ +K+ T   R + +I+ S ++V I   +   + ++ P Y  L    + S++N ++ 
Sbjct: 11  RLLEIWKNWT---RNQKIIIVSAVVVFIAAVIVIAYVLSRPTYQELTKCEDYSEMNTVTT 67

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L++    ++I  N  +++V    +  A++ +A+  +  S    GY L D +NS  LT+ 
Sbjct: 68  LLTDNGYTYQI--NNMTVNVKKQDLTNAKMLIASNDIKPS----GYSLDDALNS-SLTTT 120

Query: 126 MQEITR--VRALEGEIARTIQSISGIVAARVHI-VMPDMGSFRKIGARPTASVMIRAINP 182
             +  +   + LE + A  I S+ GI  A V + +  D  SF       T +V +     
Sbjct: 121 EADKNKKYAKYLETKFATDIASLDGIKKASVTVHLSDDTNSFYSTKKDTTVAVTVDTSKT 180

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK-LLTANEMERNILGKSLSIVQAIQHEI 241
               +AE+I   +A AV +     +T++D+TGK L   ++   ++   S S     + +I
Sbjct: 181 VSDDAAESIAVFLATAVGSSTTNGITIIDTTGKTLFNGSDNSGSVSNISYSSKLKYKSQI 240

Query: 242 EMNI-----NKALAAFLGVDNFRSAVVA-ELNMDTQQIREI 276
           E  +     N AL+  L    F  A VA  L++D   + +I
Sbjct: 241 ESTVAAGVKNTALSTSL----FNDATVAINLDLDWDTVNKI 277


>gi|317133489|ref|YP_004092803.1| flagellar M-ring protein FliF [Ethanoligenens harbinense YUAN-3]
 gi|315471468|gb|ADU28072.1| flagellar M-ring protein FliF [Ethanoligenens harbinense YUAN-3]
          Length = 528

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 105/229 (45%), Gaps = 13/229 (5%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
            Y+ +Y  L  ++  +I   L    I +++  +G+SI V  S+  +AR+ LA  G P ++
Sbjct: 49  QYELIYSGLSDAESGQIVADLQTRGIKYKL--DGNSIYVDKSVADQARMELAVDGYPQTT 106

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-- 164
            N  Y +++  N++ +T   ++   +  ++  +  TIQ+I G+  A V I   +  ++  
Sbjct: 107 LN--YSVYESGNNWAMTDKDKQQLALYQIQDRLQSTIQTIPGVKNAIVTITQGNDDTYVL 164

Query: 165 RKIGARPTASV--MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM 222
                 PTASV   +        K    I ++V+ +V  L   +VTV DS G  L  N  
Sbjct: 165 ESDKVSPTASVKLTLTPGTTLTQKQVTGIVNIVSHSVSGLSADNVTVADSDGNTL--NNT 222

Query: 223 ERNILGKS---LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM 268
             ++ G +   L++   ++ EI   +   L    G  N + +  A L+ 
Sbjct: 223 GDDLSGATSDQLALRVQVESEIRQKVLSVLGPVYGAANVQVSPAAILDF 271


>gi|237799989|ref|ZP_04588450.1| type III secretion protein HrcJ [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331022844|gb|EGI02901.1| type III secretion protein HrcJ [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 269

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 85/159 (53%), Gaps = 10/159 (6%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           +L+  L   D N +   L++ +ID R  +   G  ++V +S + +A   L A GLP  S 
Sbjct: 24  DLFTGLSEQDSNEVVARLADQHIDARKRMEKTGVVVTVATSDMNRAVRVLDAAGLPRHSR 83

Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            S  E+F K     +++ ++E  R + AL  E+  T+  I G++ ARVH+V+P+  +  +
Sbjct: 84  TSLGEIFKKEGV--ISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERVAPGE 141

Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202
                +A+V I+   A++P   +    I+ +VA+++P +
Sbjct: 142 PIQPASAAVFIKHSAALDPDSVRG--RIQQMVASSIPGM 178


>gi|226198447|ref|ZP_03794015.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei Pakistan 9]
 gi|254186953|ref|ZP_04893469.1| lipoprotein transmembrane protein [Burkholderia pseudomallei
           Pasteur 52237]
 gi|157934637|gb|EDO90307.1| lipoprotein transmembrane protein [Burkholderia pseudomallei
           Pasteur 52237]
 gi|225929504|gb|EEH25523.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei Pakistan 9]
          Length = 270

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 87/185 (47%), Gaps = 20/185 (10%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSS 88
           + LF   R          LY  L   D N +  AL +  +D   +  D G +  ++V   
Sbjct: 28  VALFAGCR--------QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDK 79

Query: 89  MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQS 145
            + KA   L A+GLP++  +    LF K    GL S   E  RVR + G   E++ T+  
Sbjct: 80  QIVKAMEVLRARGLPATRYDDLGALFKK---DGLVSTPTE-ERVRFIYGVSQELSDTLSK 135

Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDM 204
           I G+V ARVHIV+P+     ++    +ASV I+   N ++      I++LV  +V  L  
Sbjct: 136 IDGVVVARVHIVLPNNDPLAQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTY 195

Query: 205 GDVTV 209
            +V+V
Sbjct: 196 DEVSV 200


>gi|330872935|gb|EGH07084.1| type III secretion protein HrcJ [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330963064|gb|EGH63324.1| type III secretion protein HrcJ [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 268

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 85/159 (53%), Gaps = 10/159 (6%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           +L+  L   D N +   L++ +ID R  +   G  ++V +S + +A   L A GLP  S 
Sbjct: 24  DLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSEMNRAVRVLDAAGLPRRSR 83

Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            +  E+F K     +++ ++E  R + AL  E+  T+  I G++ ARVH+V+P+  +  +
Sbjct: 84  TTLGEIFKKEGV--ISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141

Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202
                +A+V I+   A++P   +    I+ +VA+++P +
Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRG--RIQQMVASSIPGM 178


>gi|167573409|ref|ZP_02366283.1| lipoprotein transmembrane protein [Burkholderia oklahomensis C6786]
          Length = 262

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 12/167 (7%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSMVGKARIHLAAQGLPSSS 106
           LY  L   D N +  AL +  +D   +  D G +  ++V    + KA   L A+GLP++ 
Sbjct: 39  LYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPATR 98

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMGS 163
            +    LF K    GL S   E  RVR + G   E++ T+  I G+V ARVHIV+P+   
Sbjct: 99  YDDLGALFKK---DGLVSTPTE-ERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDP 154

Query: 164 FRKIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209
             ++    +ASV I+   N ++      I++LV  +V  L   +V+V
Sbjct: 155 LAQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSV 201


>gi|167840290|ref|ZP_02466974.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia thailandensis MSMB43]
          Length = 253

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 12/167 (7%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSMVGKARIHLAAQGLPSSS 106
           LY  L   D N +  AL +  +D   +  D G +  ++V    + KA   L A+GLP++ 
Sbjct: 37  LYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPAAR 96

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMGS 163
            +    LF K    GL S   E  RVR + G   E++ T+  I G+V ARVHIV+P+   
Sbjct: 97  YDDLGALFKK---DGLVSTPTE-ERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDP 152

Query: 164 FRKIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209
             ++    +ASV I+   N ++      I++LV  +V  L   +V+V
Sbjct: 153 LAQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSV 199


>gi|28868592|ref|NP_791211.1| type III secretion protein HrcJ [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213968275|ref|ZP_03396419.1| type III secretion protein HrcJ [Pseudomonas syringae pv. tomato
           T1]
 gi|301383410|ref|ZP_07231828.1| type III secretion protein HrcJ [Pseudomonas syringae pv. tomato
           Max13]
 gi|302061714|ref|ZP_07253255.1| type III secretion protein HrcJ [Pseudomonas syringae pv. tomato
           K40]
 gi|302129971|ref|ZP_07255961.1| type III secretion protein HrcJ [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|790910|gb|AAB00129.1| HrpC [Pseudomonas syringae pv. tomato]
 gi|28851830|gb|AAO54906.1| type III secretion protein HrcJ [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213926913|gb|EEB60464.1| type III secretion protein HrcJ [Pseudomonas syringae pv. tomato
           T1]
 gi|331015115|gb|EGH95171.1| type III secretion protein HrcJ [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 268

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 85/159 (53%), Gaps = 10/159 (6%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           +L+  L   D N +   L++ +ID R  +   G  ++V +S + +A   L A GLP  S 
Sbjct: 24  DLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSEMNRAVRVLDAAGLPRRSR 83

Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            +  E+F K     +++ ++E  R + AL  E+  T+  I G++ ARVH+V+P+  +  +
Sbjct: 84  TTLGEIFKKEGV--ISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141

Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202
                +A+V I+   A++P   +    I+ +VA+++P +
Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRG--RIQQMVASSIPGM 178


>gi|76819642|ref|YP_335842.1| lipoprotein transmembrane protein [Burkholderia pseudomallei 1710b]
 gi|76584115|gb|ABA53589.1| lipoprotein transmembrane protein [Burkholderia pseudomallei 1710b]
          Length = 282

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 87/185 (47%), Gaps = 20/185 (10%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSS 88
           + LF   R          LY  L   D N +  AL +  +D   +  D G +  ++V   
Sbjct: 26  VALFAGCR--------QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDK 77

Query: 89  MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQS 145
            + KA   L A+GLP++  +    LF K    GL S   E  RVR + G   E++ T+  
Sbjct: 78  QIVKAMEVLRARGLPATRYDDLGALFKK---DGLVSTPTE-ERVRFIYGVSQELSDTLSK 133

Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDM 204
           I G+V ARVHIV+P+     ++    +ASV I+   N ++      I++LV  +V  L  
Sbjct: 134 IDGVVVARVHIVLPNNDPLAQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTY 193

Query: 205 GDVTV 209
            +V+V
Sbjct: 194 DEVSV 198


>gi|229017034|ref|ZP_04173954.1| Flagellar M-ring protein fliF [Bacillus cereus AH1273]
 gi|229023215|ref|ZP_04179726.1| Flagellar M-ring protein fliF [Bacillus cereus AH1272]
 gi|228738140|gb|EEL88625.1| Flagellar M-ring protein fliF [Bacillus cereus AH1272]
 gi|228744305|gb|EEL94387.1| Flagellar M-ring protein fliF [Bacillus cereus AH1273]
          Length = 525

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 79/381 (20%), Positives = 174/381 (45%), Gaps = 38/381 (9%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +++L   F+S   L     L++ + +L   ++  A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKLKNVFQS---LKTWHKLVIGAALLA--IVTGALLYFTLPDKYVVVYQNLNDADKQEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +
Sbjct: 56  TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSK-SGEEILLE-SSLGSS 112

Query: 124 SFMQEITRV----RALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIR 178
              +++ ++    + LE +I R    I     A V I +P+  + F +  A+ TA++ + 
Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAVIE---TANVQITLPEKETIFDEEKAKGTAAITVG 169

Query: 179 AINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSL 231
                +  + +   I+ +++AAVP +   +V+V+DS   +++     A+    +   K +
Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGAGEAHSSSSSSYEKEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            +   I+ +++ +I+  L      + ++      +N D     E+    +   ++ +  S
Sbjct: 230 EMQHQIEGKLKRDIDATLMTMFKPNEYKVNTKVSVNYD-----EVTRQSEKYGDKGVLRS 284

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTK 343
           K  Q  E+S  +    ++Q     ++ +VP   +  N + K         +  NYEI+ K
Sbjct: 285 KQEQE-ESSTAQEGADMKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEID-K 342

Query: 344 SIATTHDNYKLERLSIAVVVN 364
           ++ T   + +L + ++ V V+
Sbjct: 343 TVETIKKHPELTKTNVVVWVD 363


>gi|254193798|ref|ZP_04900230.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei S13]
 gi|169650549|gb|EDS83242.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei S13]
          Length = 284

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 87/185 (47%), Gaps = 20/185 (10%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSS 88
           + LF   R          LY  L   D N +  AL +  +D   +  D G +  ++V   
Sbjct: 28  VALFAGCR--------QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDK 79

Query: 89  MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQS 145
            + KA   L A+GLP++  +    LF K    GL S   E  RVR + G   E++ T+  
Sbjct: 80  QIVKAMEVLRARGLPATRYDDLGALFKK---DGLVSTPTE-ERVRFIYGVSQELSDTLSK 135

Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDM 204
           I G+V ARVHIV+P+     ++    +ASV I+   N ++      I++LV  +V  L  
Sbjct: 136 IDGVVVARVHIVLPNNDPLAQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTY 195

Query: 205 GDVTV 209
            +V+V
Sbjct: 196 DEVSV 200


>gi|126442814|ref|YP_001063279.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Burkholderia pseudomallei 668]
 gi|126222305|gb|ABN85810.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 668]
          Length = 284

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 87/185 (47%), Gaps = 20/185 (10%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSS 88
           + LF   R          LY  L   D N +  AL +  +D   +  D G +  ++V   
Sbjct: 28  VALFAGCR--------QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDK 79

Query: 89  MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQS 145
            + KA   L A+GLP++  +    LF K    GL S   E  RVR + G   E++ T+  
Sbjct: 80  QIVKAMEVLRARGLPATRYDDLGALFKK---DGLVSTPTE-ERVRFIYGVSQELSDTLSK 135

Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDM 204
           I G+V ARVHIV+P+     ++    +ASV I+   N ++      I++LV  +V  L  
Sbjct: 136 IDGVVVARVHIVLPNNDPLAQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTY 195

Query: 205 GDVTV 209
            +V+V
Sbjct: 196 DEVSV 200


>gi|53722647|ref|YP_111632.1| type III secretion protein [Burkholderia pseudomallei K96243]
 gi|126457668|ref|YP_001076235.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Burkholderia pseudomallei 1106a]
 gi|217422397|ref|ZP_03453900.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 576]
 gi|242312420|ref|ZP_04811437.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 1106b]
 gi|254264523|ref|ZP_04955388.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 1710a]
 gi|52213061|emb|CAH39099.1| putative type III secretion protein [Burkholderia pseudomallei
           K96243]
 gi|126231436|gb|ABN94849.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 1106a]
 gi|217394628|gb|EEC34647.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 576]
 gi|242135659|gb|EES22062.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 1106b]
 gi|254215525|gb|EET04910.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 1710a]
          Length = 284

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 87/185 (47%), Gaps = 20/185 (10%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSS 88
           + LF   R          LY  L   D N +  AL +  +D   +  D G +  ++V   
Sbjct: 28  VALFAGCR--------QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDK 79

Query: 89  MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQS 145
            + KA   L A+GLP++  +    LF K    GL S   E  RVR + G   E++ T+  
Sbjct: 80  QIVKAMEVLRARGLPATRYDDLGALFKK---DGLVSTPTE-ERVRFIYGVSQELSDTLSK 135

Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDM 204
           I G+V ARVHIV+P+     ++    +ASV I+   N ++      I++LV  +V  L  
Sbjct: 136 IDGVVVARVHIVLPNNDPLAQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTY 195

Query: 205 GDVTV 209
            +V+V
Sbjct: 196 DEVSV 200


>gi|153003620|ref|YP_001377945.1| secretory protein YscJ/FliF family protein [Anaeromyxobacter sp.
           Fw109-5]
 gi|152027193|gb|ABS24961.1| secretory protein YscJ/FliF family protein [Anaeromyxobacter sp.
           Fw109-5]
          Length = 239

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 24/178 (13%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDF-----RISDNGSSISVPSSMVGKARIHLAAQGLP 103
           + L   L+ +  N + VAL E  +         SD    ++V +    +A   LA + LP
Sbjct: 20  EELLHGLDEAQANEVLVALDEGGLPATKRREEGSDGQWMVAVGAHDAARAHRVLAERELP 79

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
            +      E+F K  S   T   +    + AL GE++R+++SI G+V ARVH+ +P    
Sbjct: 80  RARPPGFGEVFGK-GSMVPTPTEEHALYLHALAGELSRSVESIDGVVEARVHLGLPQPDP 138

Query: 164 FRK-----------IGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
            R            +  RP A   +RA+          IR LVA A   L+ G ++V+
Sbjct: 139 LRPGDVPAPRGAVLVKCRPAACDAVRALE-------AGIRALVAGAAGGLEPGAISVV 189


>gi|88800454|ref|ZP_01116018.1| flagellar M-ring protein FliF [Reinekea sp. MED297]
 gi|88776784|gb|EAR07995.1| flagellar M-ring protein FliF [Reinekea sp. MED297]
          Length = 318

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 138/316 (43%), Gaps = 33/316 (10%)

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE------ 298
           +N  L+  +G D F++ V A+++    +  E +++PD   +RS +   + +  E      
Sbjct: 20  VNSILSPIIGGDKFQAEVSADIDFTKVEQAEELFNPDLIAKRSEQTISEERVGEEQGGIP 79

Query: 299 ---TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
              T+QP +     + +        P PRS     + E   NYE++     T     ++ 
Sbjct: 80  GALTNQPPTDAEAPEEVDGQGQANGP-PRS----SRDEATINYEVDRTLSYTQFQQGRVR 134

Query: 356 RLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           RL++AVVV+   +T+   G +  Q   ++ L  +  +V  A G ++ RGD+I + + +FL
Sbjct: 135 RLTVAVVVDDLEVTDPETGETVTQAWDEASLQRLRTLVQDAVGYDASRGDSINVINSEFL 194

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH-ALRRLHNIDDAKKGE 473
             Q       QV F       F  +   ++  +  L++ F  L  A+R L    + ++ E
Sbjct: 195 AEQ---DAVEQVPFY--AEPWFWEIAKQILAGLFVLILIFGILRPAVRNLLAKGEDEQAE 249

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
               + L+       V   L+ +D ++L + ++       NL     S+  +   LR   
Sbjct: 250 SDEDAALA----QLDVDEDLIADDKVSLSAVDE------YNLPGPSESFERQLDALR--G 297

Query: 534 MIEINEERFAKILRKW 549
           +I  +  R A +L++W
Sbjct: 298 LIAEDPGRVALVLKRW 313


>gi|331009141|gb|EGH89197.1| type III secretion component protein HrcJ [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 444

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 85/159 (53%), Gaps = 10/159 (6%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           +L+  L   D N +   L++ +ID R  +   G  ++V +S + +A   L A GLP  S 
Sbjct: 24  DLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQSR 83

Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            S  ++F K     +++ ++E  R + AL  E+  T+  I G++ ARVH+V+P+  +  +
Sbjct: 84  ASLGDIFKKEGV--ISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141

Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202
                +A+V I+   A++P   +    I+ +VA+++P +
Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRG--RIQQMVASSIPGM 178


>gi|237509505|ref|ZP_04522220.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei MSHR346]
 gi|235001710|gb|EEP51134.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei MSHR346]
          Length = 277

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 87/185 (47%), Gaps = 20/185 (10%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSS 88
           + LF   R          LY  L   D N +  AL +  +D   +  D G +  ++V   
Sbjct: 28  VALFAGCR--------QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDK 79

Query: 89  MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQS 145
            + KA   L A+GLP++  +    LF K    GL S   E  RVR + G   E++ T+  
Sbjct: 80  QIVKAMEVLRARGLPATRYDDLGALFKK---DGLVSTPTE-ERVRFIYGVSQELSDTLSK 135

Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDM 204
           I G+V ARVHIV+P+     ++    +ASV I+   N ++      I++LV  +V  L  
Sbjct: 136 IDGVVVARVHIVLPNNDPLAQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTY 195

Query: 205 GDVTV 209
            +V+V
Sbjct: 196 DEVSV 200


>gi|330894451|gb|EGH27112.1| type III secretion protein HrcJ [Pseudomonas syringae pv. mori str.
           301020]
          Length = 269

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 84/159 (52%), Gaps = 10/159 (6%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           +L+  L   D N +   L++ +ID R  +   G  ++V +  + +A   L A GLP  S 
Sbjct: 24  DLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATRDMNRAVRVLNAAGLPRQSR 83

Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            S  E+F K     +++ ++E  R + AL  E+  T+  I G++ ARVH+V+P+  +  +
Sbjct: 84  TSLGEIFKKEGV--ISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141

Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202
                +A+V I+   A++P   +    I+ +VA+++P +
Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRG--RIQQMVASSIPGM 178


>gi|257142047|ref|ZP_05590309.1| lipoprotein transmembrane protein [Burkholderia thailandensis E264]
          Length = 287

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 14/168 (8%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSMVGKARIHLAAQGLPSSS 106
           LY  L   D N +  AL +  +D   +  D G +  ++V    + KA   L A+GLP++ 
Sbjct: 41  LYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPATR 100

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMGS 163
            +    LF K    GL S   E  RVR + G   E++ T+  I G+V ARVHIV+P+   
Sbjct: 101 YDDLGALFKK---DGLVSTPTE-ERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDP 156

Query: 164 FRKIGARPTASVMIRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTV 209
             ++    +ASV I+   PS   +     I++LV  +V  L   +V+V
Sbjct: 157 LAQVAKPSSASVFIK-YRPSANLATLTPQIKNLVVHSVEGLTYDEVSV 203


>gi|82795289|gb|ABB91658.1| type III secretion protein HrcJ [Pseudomonas syringae pv. tagetis]
          Length = 268

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 85/159 (53%), Gaps = 10/159 (6%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           +L+  L   D N +   L++ +ID R  +   G  ++V +S + +A   L A GLP  S 
Sbjct: 24  DLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLDAAGLPRHSR 83

Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            S  E+F K     +++ ++E  R + AL  E+  T+  I G++ ARVH+V+P+  +  +
Sbjct: 84  TSLGEIFKKEGV--ISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141

Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202
                +A+V I+   +++P   +    I+ +VA+++P +
Sbjct: 142 PVQPASAAVFIKHSASLDPDSVRG--RIQQMVASSIPGM 178


>gi|330957475|gb|EGH57735.1| type III secretion protein HrcJ [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 269

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 84/159 (52%), Gaps = 10/159 (6%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           +L+  L   D N +   L++ +ID R  +   G  ++V +  + +A   L A GLP  S 
Sbjct: 24  DLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATRDMNRAVRVLNAAGLPRQSR 83

Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            S  E+F K     +++ ++E  R + AL  E+  T+  I G++ ARVH+V+P+  +  +
Sbjct: 84  TSLGEIFKKEGV--ISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141

Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202
                +A+V I+   A++P   +    I+ +VA+++P +
Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRG--RIQQMVASSIPGM 178


>gi|83716240|ref|YP_438944.1| lipoprotein transmembrane protein [Burkholderia thailandensis E264]
 gi|83650065|gb|ABC34129.1| lipoprotein transmembrane protein [Burkholderia thailandensis E264]
          Length = 285

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 14/168 (8%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSMVGKARIHLAAQGLPSSS 106
           LY  L   D N +  AL +  +D   +  D G +  ++V    + KA   L A+GLP++ 
Sbjct: 39  LYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPATR 98

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMGS 163
            +    LF K    GL S   E  RVR + G   E++ T+  I G+V ARVHIV+P+   
Sbjct: 99  YDDLGALFKK---DGLVSTPTE-ERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDP 154

Query: 164 FRKIGARPTASVMIRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTV 209
             ++    +ASV I+   PS   +     I++LV  +V  L   +V+V
Sbjct: 155 LAQVAKPSSASVFIK-YRPSANLATLTPQIKNLVVHSVEGLTYDEVSV 201


>gi|330937050|gb|EGH41134.1| type III secretion protein HrcJ [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 229

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 85/159 (53%), Gaps = 10/159 (6%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           +L+  L   D N +   L++ +ID R  +   G  ++V +S + +A   L A GLP  S 
Sbjct: 24  DLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQSR 83

Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            S  ++F K     +++ ++E  R + AL  E+  T+  I G++ ARVH+V+P+  +  +
Sbjct: 84  ASLGDIFKKEGV--ISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141

Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202
                +A+V I+   A++P   +    I+ +VA+++P +
Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRG--RIQQMVASSIPGM 178


>gi|330984953|gb|EGH83056.1| type III secretion protein HrcJ [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 269

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 84/159 (52%), Gaps = 10/159 (6%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           +L+  L   D N +   L++ +ID R  +   G  ++V +  + +A   L A GLP  S 
Sbjct: 24  DLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATRDMNRAVRVLNAAGLPRQSR 83

Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            S  E+F K     +++ ++E  R + AL  E+  T+  I G++ ARVH+V+P+  +  +
Sbjct: 84  TSLGEIFKKEGV--ISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141

Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202
                +A+V I+   A++P   +    I+ +VA+++P +
Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRG--RIQQMVASSIPGM 178


>gi|319795607|ref|YP_004157247.1| type III secretion apparatus lipoprotein, yscj/hrcj family
           [Variovorax paradoxus EPS]
 gi|315598070|gb|ADU39136.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Variovorax paradoxus EPS]
          Length = 267

 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 61/114 (53%), Gaps = 8/114 (7%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF---RISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           ++  L   + N I VAL+   ID    R+      + V  S +G A   L AQGLP+   
Sbjct: 37  IFSNLNEVEANEIVVALAAEGIDASKTRLEGTNWQVDVEESRMGTALEILRAQGLPAERY 96

Query: 108 NSGYELFDKVNSFGLTSFMQE--ITRVRALEGEIARTIQSISGIVAARVHIVMP 159
            S  ++F K    GL S   E  +  + A+  E+A+T++++ G+VAARVH+V+P
Sbjct: 97  ASMGDVFQKQ---GLVSTPSEERMRYIYAVSQELAQTLRTVDGVVAARVHVVIP 147


>gi|167577322|ref|ZP_02370196.1| lipoprotein transmembrane protein [Burkholderia thailandensis
           TXDOH]
          Length = 260

 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 14/168 (8%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSMVGKARIHLAAQGLPSSS 106
           LY  L   D N +  AL +  +D   +  D G +  ++V    + KA   L A+GLP++ 
Sbjct: 41  LYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPATR 100

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMGS 163
            +    LF K    GL S   E  RVR + G   E++ T+  I G+V ARVHIV+P+   
Sbjct: 101 YDDLGALFKK---DGLVSTPTE-ERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDP 156

Query: 164 FRKIGARPTASVMIRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTV 209
             ++    +ASV I+   PS   +     I++LV  +V  L   +V+V
Sbjct: 157 LAQVAKPSSASVFIK-YRPSANLATLTPQIKNLVVHSVEGLTYDEVSV 203


>gi|312602780|ref|YP_004022625.1| type III secretion cytoplasmic membrane protein SctJ [Burkholderia
           rhizoxinica HKI 454]
 gi|306431583|emb|CBK52135.1| type III secretion cytoplasmic membrane protein SctJ [Burkholderia
           rhizoxinica HKI 454]
 gi|312170094|emb|CBW77106.1| type III secretion cytoplasmic membrane protein SctJ [Burkholderia
           rhizoxinica HKI 454]
          Length = 265

 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 73/139 (52%), Gaps = 13/139 (9%)

Query: 48  YDNLYVKLEVSDVNRISVALSEANIDFRIS--DNGS--SISVPSSMVGKARIHLAAQGLP 103
           +  LY  L   DVN + VAL E  +D   S  DNG   S+SV  + + +A   L A+GLP
Sbjct: 29  HKELYNNLSEQDVNEMMVALLERGVDASKSTPDNGKTWSLSVEEAEIVRAMEVLRARGLP 88

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPD 160
            +  +    LF +    GL S   E  RVR + G   E++ T+  I G+V ARV IV+P+
Sbjct: 89  HAKYDDLGSLFKR---DGLVSTPTE-ERVRFIYGLSQELSNTLSKIDGVVVARVQIVLPN 144

Query: 161 MGSFRKIGARP-TASVMIR 178
                 + A+P +ASV I+
Sbjct: 145 NDPL-ALQAKPSSASVFIK 162


>gi|289623695|ref|ZP_06456649.1| type III secretion component protein HrcJ [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289647631|ref|ZP_06478974.1| type III secretion component protein HrcJ [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330871299|gb|EGH06008.1| type III secretion component protein HrcJ [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 268

 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 85/159 (53%), Gaps = 10/159 (6%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           +L+  L   D N +   L++ +ID R  +   G  ++V +S + +A   L A GLP  S 
Sbjct: 24  DLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQSR 83

Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            S  ++F K     +++ ++E  R + AL  E+  T+  I G++ ARVH+V+P+  +  +
Sbjct: 84  ASLGDIFKKEGV--ISTPLEERARYIYALSQELESTLSQIDGVIVARVHVVLPERIAPGE 141

Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202
                +A+V I+   A++P   +    I+ +VA+++P +
Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRG--RIQQMVASSIPGM 178


>gi|167615471|ref|ZP_02384106.1| lipoprotein transmembrane protein [Burkholderia thailandensis Bt4]
          Length = 252

 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 14/168 (8%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSMVGKARIHLAAQGLPSSS 106
           LY  L   D N +  AL +  +D   +  D G +  ++V    + KA   L A+GLP++ 
Sbjct: 41  LYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPATR 100

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMGS 163
            +    LF K    GL S   E  RVR + G   E++ T+  I G+V ARVHIV+P+   
Sbjct: 101 YDDLGALFKK---DGLVSTPTE-ERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDP 156

Query: 164 FRKIGARPTASVMIRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTV 209
             ++    +ASV I+   PS   +     I++LV  +V  L   +V+V
Sbjct: 157 LAQVAKPSSASVFIK-YRPSANLATLTPQIKNLVVHSVEGLTYDEVSV 203


>gi|51103010|gb|AAT96157.1| HrcJ [Pseudomonas viridiflava]
 gi|51103065|gb|AAT96211.1| HrcJ [Pseudomonas viridiflava]
          Length = 268

 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 84/159 (52%), Gaps = 10/159 (6%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           +L+  +   D N +   L++ +ID R  +   G  ++V +  + +A   L A GLP  S 
Sbjct: 24  DLFTGMSEQDSNEVIARLADQHIDARKRLEKGGVVVTVATQDMNRAVRVLDAAGLPRQSR 83

Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            S  E+F K     +++ ++E  R + AL  E+  T+  I G++ ARVH+V+P+  +  +
Sbjct: 84  TSLGEIFKKEGV--ISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141

Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202
                +A+V I+   A++P   +    I+ +VA+++P +
Sbjct: 142 PVQPASAAVFIKHSTALDPDSVRG--RIQQMVASSIPGM 178


>gi|257487247|ref|ZP_05641288.1| type III secretion component protein HrcJ [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|50508099|dbj|BAD30075.1| HrcJ [Pseudomonas syringae pv. tabaci]
 gi|238577776|gb|ACR46687.1| HrcJ [Pseudomonas syringae pv. tabaci]
          Length = 268

 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 85/159 (53%), Gaps = 10/159 (6%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           +L+  L   D N +   L++ +ID R  +   G  ++V +S + +A   L A GLP  S 
Sbjct: 24  DLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQSR 83

Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            S  ++F K     +++ ++E  R + AL  E+  T+  I G++ ARVH+V+P+  +  +
Sbjct: 84  ASLGDIFKKEGV--ISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141

Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202
                +A+V I+   A++P   +    I+ +VA+++P +
Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRG--RIQQMVASSIPGM 178


>gi|298485938|ref|ZP_07004013.1| type III secretion system lipoprotein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159524|gb|EFI00570.1| type III secretion system lipoprotein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 268

 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 85/159 (53%), Gaps = 10/159 (6%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           +L+  L   D N +   L++ +ID R  +   G  ++V +S + +A   L A GLP  S 
Sbjct: 24  DLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQSR 83

Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            S  ++F K     +++ ++E  R + AL  E+  T+  I G++ ARVH+V+P+  +  +
Sbjct: 84  ASLGDIFKKEGV--ISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141

Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202
                +A+V I+   A++P   +    I+ +VA+++P +
Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRG--RIQQMVASSIPGM 178


>gi|9800448|gb|AAF99294.1|AF268940_4 HrcJ [Pseudomonas syringae pv. phaseolicola]
          Length = 268

 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 85/159 (53%), Gaps = 10/159 (6%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           +L+  L   D N +   L++ +ID R  +   G  ++V +S + +A   L A GLP  S 
Sbjct: 24  DLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQSR 83

Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            S  ++F K     +++ ++E  R + AL  E+  T+  I G++ ARVH+V+P+  +  +
Sbjct: 84  ASLGDIFKKEGV--ISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141

Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202
                +A+V I+   A++P   +    I+ +VA+++P +
Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRG--RIQQMVASSIPGM 178


>gi|71734078|ref|YP_273534.1| type III secretion component protein HrcJ [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|37528863|gb|AAQ92361.1| HrcJ [Pseudomonas syringae]
 gi|71554631|gb|AAZ33842.1| type III secretion component protein HrcJ [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320322966|gb|EFW79056.1| type III secretion component protein HrcJ [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329911|gb|EFW85899.1| type III secretion component protein HrcJ [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330874585|gb|EGH08734.1| type III secretion component protein HrcJ [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 268

 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 85/159 (53%), Gaps = 10/159 (6%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           +L+  L   D N +   L++ +ID R  +   G  ++V +S + +A   L A GLP  S 
Sbjct: 24  DLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQSR 83

Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            S  ++F K     +++ ++E  R + AL  E+  T+  I G++ ARVH+V+P+  +  +
Sbjct: 84  ASLGDIFKKEGV--ISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141

Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202
                +A+V I+   A++P   +    I+ +VA+++P +
Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRG--RIQQMVASSIPGM 178


>gi|330969118|gb|EGH69184.1| type III secretion protein HrcJ [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 268

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 85/159 (53%), Gaps = 10/159 (6%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           +L+  L   D N +   L++ +ID R  +   G  ++V +S + +A   L A GLP  S 
Sbjct: 24  DLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQSR 83

Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            S  ++F K     +++ ++E  R + AL  E+  T+  I G++ ARVH+V+P+  +  +
Sbjct: 84  ASLGDIFKKEGV--ISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141

Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202
                +A+V I+   A++P   +    I+ +VA+++P +
Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRG--RIQQMVASSIPGM 178


>gi|289678028|ref|ZP_06498918.1| type III secretion protein HrcJ [Pseudomonas syringae pv. syringae
           FF5]
 gi|330895842|gb|EGH28130.1| type III secretion protein HrcJ [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 268

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 85/159 (53%), Gaps = 10/159 (6%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           +L+  L   D N +   L++ +ID R  +   G  ++V +S + +A   L A GLP  S 
Sbjct: 24  DLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQSR 83

Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            S  ++F K     +++ ++E  R + AL  E+  T+  I G++ ARVH+V+P+  +  +
Sbjct: 84  ASLGDIFKKEGV--ISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141

Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202
                +A+V I+   A++P   +    I+ +VA+++P +
Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRG--RIQQMVASSIPGM 178


>gi|66044446|ref|YP_234287.1| type III secretion protein HrcJ [Pseudomonas syringae pv. syringae
           B728a]
 gi|63255153|gb|AAY36249.1| type III secretion protein HrcJ [Pseudomonas syringae pv. syringae
           B728a]
          Length = 268

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 85/159 (53%), Gaps = 10/159 (6%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           +L+  L   D N +   L++ +ID R  +   G  ++V +S + +A   L A GLP  S 
Sbjct: 24  DLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQSR 83

Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            S  ++F K     +++ ++E  R + AL  E+  T+  I G++ ARVH+V+P+  +  +
Sbjct: 84  ASLGDIFKKEGV--ISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141

Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202
                +A+V I+   A++P   +    I+ +VA+++P +
Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRG--RIQQMVASSIPGM 178


>gi|194350697|gb|ACF53779.1| HrcJ [Erwinia psidii]
          Length = 146

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 77/149 (51%), Gaps = 8/149 (5%)

Query: 59  DVNRISVALSEANI--DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
           D N ++  L   +I  D R S +G ++ V ++ + +A   L A GLP  +  +  E+F K
Sbjct: 1   DANEVAAELGRYHIQADKRTSKDGITVLVDAAELNRAVHILDAAGLPRPARTNLGEVFQK 60

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
            N    T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +     +A+V 
Sbjct: 61  -NGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAPGEPVQPASAAVF 119

Query: 177 IRA---INPSVYKSAEAIRHLVAAAVPNL 202
           I+    ++P V +    IR +VA+++P L
Sbjct: 120 IKYRPDLDPDVIEP--RIRQMVASSLPGL 146


>gi|330950834|gb|EGH51094.1| type III secretion protein HrcJ [Pseudomonas syringae Cit 7]
          Length = 268

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 85/159 (53%), Gaps = 10/159 (6%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           +L+  L   D N +   L++ +ID R  +   G  ++V +S + +A   L A GLP  S 
Sbjct: 24  DLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQSR 83

Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            S  ++F K     +++ ++E  R + AL  E+  T+  I G++ ARVH+V+P+  +  +
Sbjct: 84  ASLGDIFKKEGV--ISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141

Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202
                +A+V I+   A++P   +    I+ +VA+++P +
Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRG--RIQQMVASSIPGM 178


>gi|818896|gb|AAB05080.1| HrcJ [Pseudomonas syringae pv. syringae]
          Length = 268

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 85/159 (53%), Gaps = 10/159 (6%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           +L+  L   D N +   L++ +ID R  +   G  ++V +S + +A   L A GLP  S 
Sbjct: 24  DLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQSR 83

Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            S  ++F K     +++ ++E  R + AL  E+  T+  I G++ ARVH+V+P+  +  +
Sbjct: 84  ASLGDIFKKEGV--ISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141

Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202
                +A+V I+   A++P   +    I+ +VA+++P +
Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRG--RIQQMVASSIPGM 178


>gi|226327719|ref|ZP_03803237.1| hypothetical protein PROPEN_01592 [Proteus penneri ATCC 35198]
 gi|225203423|gb|EEG85777.1| hypothetical protein PROPEN_01592 [Proteus penneri ATCC 35198]
          Length = 396

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/261 (22%), Positives = 111/261 (42%), Gaps = 39/261 (14%)

Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKA 248
           AI H+VA++V  +    VT++D +GKLLT  + + R++    L  VQ ++   +  I   
Sbjct: 16  AIVHIVASSVAGMPDSSVTIVDQSGKLLTQPDALGRDLNSIQLKYVQELESRYQQRIETL 75

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------- 298
           L   +G  N  + V A+++    +     Y P+    ++   SK   +SE          
Sbjct: 76  LGPIVGRGNVHAQVTAQVDFSHTEETAEEYKPNQPPNQAAVRSKQLSQSEQNGGMLAGGV 135

Query: 299 ----TSQPESAVTVEQNMPHVSDRKV-----------PLPRSLENTDKKEEQSNYEINTK 343
               ++QP +        P   + +             L R+  +  + +E +NYE++ +
Sbjct: 136 PGALSNQPVAPPQAPIETPKAQEGEKTEGTNATGTNRSLTRNPNSNSRLDETTNYEVDRR 195

Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK-----------IDSYLAEINKIV 392
                     +ERLS+AV+VN   +     + A +G+            D  + +I  +V
Sbjct: 196 IRHIKRPVGNVERLSVAVIVNYKTVEN--KKEAAEGEEPVVETKLVPLTDEQIQQIEGLV 253

Query: 393 SAATGINSRRGDTITITSMDF 413
             A G +  RGD++++ +  F
Sbjct: 254 REAMGYSQERGDSLSVVNSQF 274


>gi|302338077|ref|YP_003803283.1| flagellar M-ring protein FliF [Spirochaeta smaragdinae DSM 11293]
 gi|301635262|gb|ADK80689.1| flagellar M-ring protein FliF [Spirochaeta smaragdinae DSM 11293]
          Length = 569

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 91/395 (23%), Positives = 165/395 (41%), Gaps = 48/395 (12%)

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
           +++ISV L E  ++  I+  G  I VP     +  + + A+     +  S +++F K++ 
Sbjct: 64  LDKISVRLDEEGVEHTITAEGL-ILVPDKRTAQRMVSILAREDLIPADTSPWDIF-KMDR 121

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           + LT F + +   RA+   + + I+++  +  A+V +V+P+   F++     TASV+I  
Sbjct: 122 WTLTDFERNVNLRRAITENLEQHIEALEDVDNAQVTLVLPEDKLFQEDQNPVTASVIITP 181

Query: 180 -----INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGK- 229
                I  S  K  E I  LV  AV  L   ++ + D  G +L       + +R  L K 
Sbjct: 182 RPGSDITQSRSK-IEGIVKLVRLAVEGLKDENIVISDQRGVVLNDFADMADFDRLELSKR 240

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVD-----------NFRSAVVA-ELNMDTQQIREIV 277
            L   Q ++   +  I   ++   G D           +FR   V+ E +     + +  
Sbjct: 241 QLDQKQRLEATYKNQIFTEMSQIFGSDRVSILKVDIDLDFRKETVSTEEHFPVTTVEDNP 300

Query: 278 YDPDSKVE------RSIRLSKDAQRSETSQPESAVTVE-QNMPHVSDRKVPLPRSLENTD 330
             P ++ E      RS  + K+  +     PE     E Q  P   D    +   + N +
Sbjct: 301 NTPYNEREYVLSIPRSSEIVKEEFKGTGFNPEGPPGQEGQTPPAYKD----MNNLVGNYN 356

Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN---KGRLTEVLGRSAD-QGKI----- 381
           K  E  N E+NT++I      + + R+++ V V+   +    E      D  G I     
Sbjct: 357 KNSEIINQEVNTRNIVEEKSPWTIRRITVGVAVDGVWRWSYNENGTVKLDTDGSIEREYT 416

Query: 382 ---DSYLAEINKIVSAATGINSRRGDTITITSMDF 413
              D  L +   ++  A G N  RGD++T+  + F
Sbjct: 417 PVSDEDLNKAQTLIEHAVGFNRERGDSVTVQHIQF 451


>gi|42562013|gb|AAS20455.1| HrcJ [Pseudomonas syringae pv. phaseolicola]
          Length = 268

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 85/159 (53%), Gaps = 10/159 (6%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           +L+  L   D N +   L++ +ID R  +   G  ++V +S + +A   L A GLP  S 
Sbjct: 24  DLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQSR 83

Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            S  ++F K     +++ ++E  R + AL  E+  T+  I G++ ARVH+V+P+  +  +
Sbjct: 84  ASLGDIFKKEGV--ISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141

Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202
                +A+V I+   A++P   +    I+ +VA+++P +
Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRG--RIQQMVASSIPGM 178


>gi|330975852|gb|EGH75918.1| type III secretion protein HrcJ [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 268

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 85/159 (53%), Gaps = 10/159 (6%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           +L+  L   D N +   L++ +ID R  +   G  ++V +S + +A   L A GLP  S 
Sbjct: 24  DLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQSR 83

Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            S  ++F K     +++ ++E  R + AL  E+  T+  I G++ ARVH+V+P+  +  +
Sbjct: 84  ASLGDIFKKEGV--ISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141

Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202
                +A+V I+   A++P   +    I+ +VA+++P +
Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRG--RIQQMVASSIPGM 178


>gi|307947525|ref|ZP_07662858.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Roseibium sp. TrichSKD4]
 gi|307769343|gb|EFO28571.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Roseibium sp. TrichSKD4]
          Length = 250

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 9/165 (5%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF---RISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           LY KL+  DVN ++  L    I     R S+   ++ +      +A   LA  GLP    
Sbjct: 33  LYSKLDERDVNEMAFVLESNGISVSRERDSEGTYTLFIERGDTARAYGILAQNGLPRQKF 92

Query: 108 NSGYELF--DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
           +   E+F  DK+ S   T+F ++   + A+  E++++I  I+G+ +A VHI +P+     
Sbjct: 93  DGLGEVFSSDKLVS---TAFEEKARFIHAVTEELSKSISRIAGVTSAEVHITLPEKAPLE 149

Query: 166 KIGARPTASVMI-RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209
           +  A   A+V I  +    +      I++LVA++V  L   DV+V
Sbjct: 150 EETAPSRAAVFIYHSQGTDLNAQIPVIKNLVASSVERLSYEDVSV 194


>gi|312597814|gb|ADQ89929.1| RscJ [Pseudomonas fluorescens]
          Length = 293

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 84/164 (51%), Gaps = 12/164 (7%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108
           L+  L   D N +   L+  N++   ++  +G ++ V  + +  A   L A GLP  S +
Sbjct: 22  LHSHLSEQDANEVIAELANKNVEASKQVDKDGLTVLVEPADMNSAVQVLEAAGLPRRSRS 81

Query: 109 SGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
           S  E+F K     +++ M+E  R + AL  E+  T+  I G+V ARVH+V+P+  +  + 
Sbjct: 82  SLGEIFRKEGV--ISTPMEERARYIYALSQELESTLSQIDGVVLARVHVVLPERVAPGEP 139

Query: 168 GARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNLDMGDVT 208
               +ASV I+   A++P        +R+LVA+ +P   M D T
Sbjct: 140 VQPASASVFIKHTNALDPD--SITPRVRNLVASGIPG--MADAT 179


>gi|3603315|gb|AAC35801.1| putative hrp type III secretion pathway protein [Pseudomonas
           syringae pv. glycinea]
          Length = 268

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 84/159 (52%), Gaps = 10/159 (6%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           +L+  L   D N +   L++ +ID R  +   G  ++V +S + +A   L A GLP  S 
Sbjct: 24  DLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQSR 83

Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            S  ++F K     +++ ++E  R + AL  E+  T   I G++ ARVH+V+P+  +  +
Sbjct: 84  ASLGDIFKKEGV--ISTPLEERARYIYALSQELEATWSQIDGVIVARVHVVLPERIAPGE 141

Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202
                +A+V I+   A++P   +    I+ +VA+++P +
Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRG--RIQQMVASSIPGM 178


>gi|330812416|ref|YP_004356878.1| type III secretion protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380524|gb|AEA71874.1| putative type III secretion protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 295

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 84/164 (51%), Gaps = 12/164 (7%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108
           L+  L   D N +   L+  N++   ++  +G ++ V  + +  A   L A GLP  S +
Sbjct: 24  LHSHLSEQDANEVIAELANKNVEASKQVDKDGLTVLVEPADMNSAVQVLEAAGLPRRSRS 83

Query: 109 SGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
           S  E+F K     +++ M+E  R + AL  E+  T+  I G+V ARVH+V+P+  +  + 
Sbjct: 84  SLGEIFRKEGV--ISTPMEERARYIYALSQELESTLSQIDGVVLARVHVVLPERVAPGEP 141

Query: 168 GARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNLDMGDVT 208
               +ASV I+   A++P        +R+LVA+ +P   M D T
Sbjct: 142 VQPASASVFIKHTNALDPD--SITPRVRNLVASGIPG--MADAT 181


>gi|27376924|ref|NP_768453.1| RhcJ protein [Bradyrhizobium japonicum USDA 110]
 gi|12620520|gb|AAG60796.1|AF322012_101 RhcJ [Bradyrhizobium japonicum]
 gi|27350066|dbj|BAC47078.1| RhcJ protein [Bradyrhizobium japonicum USDA 110]
          Length = 287

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 99/207 (47%), Gaps = 18/207 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            K G+S GR     L   + +P++L +            +LY K++  + N +   L   
Sbjct: 5   MKRGSSGGRQSWRRLRVFLAMPLLLSLIG-------CKTDLYTKIQEREANEMLALLLGK 57

Query: 71  NID-FRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
            +D  R+   D  S+I V    +  +   L  +GLP  S  +  E+F    S  + S ++
Sbjct: 58  GVDAVRVVAKDGTSTIQVEEKQLAYSIDLLNVEGLPRQSFKNLGEVFK--GSGLVASPIE 115

Query: 128 EITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARP-TASVMIRAINPSVY 185
           E  R V AL  E++RTI  I G+++ARVH+V+P     R+ GA P +ASV IR    S  
Sbjct: 116 ERARYVYALSEELSRTISDIDGVLSARVHVVLPKNDLLRQ-GATPSSASVFIRH-GSSAR 173

Query: 186 KSA--EAIRHLVAAAVPNLDMGDVTVL 210
            SA    I+ LVA ++  L    V V+
Sbjct: 174 LSALLPQIKMLVANSIEGLSYDKVAVV 200


>gi|227873553|ref|ZP_03991796.1| flagellar M-ring protein FliF [Oribacterium sinus F0268]
 gi|227840599|gb|EEJ50986.1| flagellar M-ring protein FliF [Oribacterium sinus F0268]
          Length = 557

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 102/241 (42%), Gaps = 12/241 (4%)

Query: 36  FMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARI 95
           F+ AR       Y  L+  L   +  +I   L E N+ +       ++ VPS  V   R 
Sbjct: 35  FLLARG--QKTEYQTLFSSLSQGEAQQIVSLLQEQNVPYLYDGKSGALKVPSESVDTLRA 92

Query: 96  HLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVH 155
            L ++G P S     Y+++   +    T   ++   +  L+  +  TI+   G+  A+V 
Sbjct: 93  QLLSKGYPKSG--FAYDMYIGNSGLMTTESDKKQYTLYDLQDRLGATIRLFDGVRDAKVT 150

Query: 156 IVMPDMGSFRKIGARP---TASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVL 210
           I      ++      P   +ASV++          K+AEAI++L+A +V  ++  +V+V 
Sbjct: 151 IAEGTDQTYAIEDENPVQASASVVVTMEEGQSLSEKNAEAIKNLIARSVKGMNFTNVSVF 210

Query: 211 DSTGKLLTANEMERNILGKSLSIVQ---AIQHEIEMNINKALAAFLGVDNFRSAVVAELN 267
           D+      A +   +  G   S+      +++ I  NI + L    G +N   +V   LN
Sbjct: 211 DAGTMEEVAADAGDSASGSGTSMANLTTTVENNIANNIKRVLGKIYGGENLAVSVKGTLN 270

Query: 268 M 268
           M
Sbjct: 271 M 271


>gi|229896277|ref|ZP_04511447.1| Flagellar M-ring protein fliF [Yersinia pestis Pestoides A]
 gi|229701200|gb|EEO89229.1| Flagellar M-ring protein fliF [Yersinia pestis Pestoides A]
          Length = 115

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 36/67 (53%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  SP Y  LY  L   D   I   L++ NI +R +DNG ++ +P+  V + R+ LA Q
Sbjct: 46  LWAKSPDYRVLYSNLSDRDGGDIVTQLTQLNIPYRFADNGGALLIPAEKVHETRLRLAQQ 105

Query: 101 GLPSSSS 107
           GLP   S
Sbjct: 106 GLPKGGS 112


>gi|298487098|ref|ZP_07005148.1| type III secretion system lipoprotein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298158341|gb|EFH99411.1| type III secretion system lipoprotein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 259

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 4/132 (3%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDF--RISDNGS-SISVPSSMVGKARIHLAAQGLPSSS 106
           +LY  L   + N +   L    I    ++ DNG   + V      +A   L   GLP  S
Sbjct: 26  DLYTNLGEREANAMLAVLLRDGIPASRKVQDNGQLKVMVDEKRFAQAMAALDDAGLPGQS 85

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            ++  E+F K N    +   +    V AL  E++ T+  I GI++ARVH+V+PD    ++
Sbjct: 86  FSNMGEIF-KGNGLVSSPVQERAQMVYALSEELSHTVSQIDGILSARVHVVLPDNDLLKR 144

Query: 167 IGARPTASVMIR 178
           + +  +ASV++R
Sbjct: 145 VISPSSASVLVR 156


>gi|16520038|ref|NP_444158.1| outermembrane protein RhcJ; component of type III secretion
           apparatus [Sinorhizobium fredii NGR234]
 gi|2497732|sp|P55714|NOLT_RHISN RecName: Full=Nodulation protein nolT; Flags: Precursor
 gi|2182731|gb|AAB91945.1| outermembrane protein RhcJ; component of type III secretion
           apparatus [Sinorhizobium fredii NGR234]
          Length = 289

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 69/133 (51%), Gaps = 6/133 (4%)

Query: 50  NLYVKLEVSDVNRISVALSEANID-FRIS--DNGSSISVPSSMVGKARIHLAAQGLPSSS 106
           +LY +L+  + N +   L ++ +D  R++  D  S+I V   ++  +   L A+GLP  S
Sbjct: 37  DLYTQLQEREANEMLALLMDSGVDAVRVAGKDGTSTIQVDEKLLAFSIKLLNAKGLPRQS 96

Query: 107 SNSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
             +  E+F    S  + S  +E  R V AL  E++ TI  I G+ +ARVH+V+P     R
Sbjct: 97  FKNLGEIFQ--GSGLIASPTEERARYVYALSEELSHTISDIDGVFSARVHVVLPHNDLLR 154

Query: 166 KIGARPTASVMIR 178
                 +ASV IR
Sbjct: 155 AGDTPSSASVFIR 167


>gi|170738287|ref|YP_001779547.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Burkholderia cenocepacia MC0-3]
 gi|169820475|gb|ACA95057.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia cenocepacia MC0-3]
          Length = 287

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 61/117 (52%), Gaps = 11/117 (9%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSIS--VPSSMVGKARIHLAAQGLPSSS 106
           LY  L   D N I  AL +A ID +   +D G + S  V  + + +A   L   GLP+  
Sbjct: 34  LYGNLSEQDCNEIVAALLQAGIDAKKESADGGKTWSAKVDDAHIVQAMNVLREHGLPAHK 93

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPD 160
            +   +LF K    GL S   E  RVR + G   E+++T+  I G++ ARVHIV+PD
Sbjct: 94  YDDLGDLFKK---DGLVSTPTE-ERVRFIYGVSQELSKTLSQIDGVMVARVHIVLPD 146


>gi|71734790|ref|YP_274723.1| type III secretion component [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|71555343|gb|AAZ34554.1| type III secretion component, putative [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320324510|gb|EFW80587.1| type III secretion component, putative [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320328370|gb|EFW84373.1| type III secretion component, putative [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330882195|gb|EGH16344.1| type III secretion component [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 259

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 4/132 (3%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDF--RISDNGS-SISVPSSMVGKARIHLAAQGLPSSS 106
           +LY  L   + N +   L    I    ++ DNG   + V      +A   L   GLP  S
Sbjct: 26  DLYTNLGEREANAMLAVLLRDGIPASRKVQDNGQLKVMVDEKRFAQAMAALDDAGLPGQS 85

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            ++  E+F K N    +   +    V AL  E++ T+  I GI++ARVH+V+PD    ++
Sbjct: 86  FSNMGEVF-KGNGLVSSPVQERAQMVYALSEELSHTVSQIDGILSARVHVVLPDNDLLKR 144

Query: 167 IGARPTASVMIR 178
           + +  +ASV++R
Sbjct: 145 VISPSSASVLVR 156


>gi|330985209|gb|EGH83312.1| type III secretion component [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 259

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 7/165 (4%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDF--RISDNGS-SISVPSSMVGKARIHLAAQGLPSSS 106
           +LY  L   + N +   L    I    ++ DNG   + V      +A   L   GLP  S
Sbjct: 26  DLYTNLGEREANAMLAVLLRDGIPASRKVQDNGQLKVMVDEKRFAQAMAALDDAGLPGQS 85

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            ++  E+F K N    +   +    V AL  E++ T+  I GI++ARVH+V+PD    ++
Sbjct: 86  FSNMGEVF-KGNGLVSSPVQERAQMVYALSEELSHTVSQIDGILSARVHVVLPDNDLLKR 144

Query: 167 IGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTV 209
           + +  +ASV++R  +P   +      I+ LVA  +  L    V+V
Sbjct: 145 VISPSSASVLVR-FDPRTDINVLIPQIKTLVANGISGLGYDGVSV 188


>gi|330876200|gb|EGH10349.1| type III secretion component [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
          Length = 259

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 4/132 (3%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDF--RISDNGS-SISVPSSMVGKARIHLAAQGLPSSS 106
           +LY  L   + N +   L    I    ++ DNG   + V      +A   L   GLP  S
Sbjct: 26  DLYTNLGEREANAMLAVLLRDGIPASRKVQDNGQLKVMVDEKRFAQAMAALDDAGLPGQS 85

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            ++  E+F K N    +   +    V AL  E++ T+  I GI++ARVH+V+PD    ++
Sbjct: 86  FSNMGEVF-KGNGLVSSPVQERAQMVYALSEELSHTVSQIDGILSARVHVVLPDNDLLKR 144

Query: 167 IGARPTASVMIR 178
           + +  +ASV++R
Sbjct: 145 VISPSSASVLVR 156


>gi|197121159|ref|YP_002133110.1| secretory protein YscJ/FliF family protein [Anaeromyxobacter sp. K]
 gi|196171008|gb|ACG71981.1| secretory protein YscJ/FliF family protein [Anaeromyxobacter sp. K]
          Length = 239

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 7/134 (5%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRIS-----DNGSSISVPSSMVGKARIHLAAQGLP 103
           + L   L+    N + VAL E  I    +     D G  + V  +   +AR  LA + LP
Sbjct: 20  EALLHGLDEPQANDVLVALDEGGIAAEKAREDGADAGWEVRVAPADAVRARRVLAERDLP 79

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
                +G++      S   T+  +    + AL GE+AR+I++I G+V ARVH+ +P    
Sbjct: 80  RQRP-AGFDAVLAKGSMVPTATEEHALYLHALSGELARSIEAIDGVVGARVHLGLPQADP 138

Query: 164 FRKIGARPTASVMI 177
           FR  G RP     +
Sbjct: 139 FRP-GERPAPRAAV 151


>gi|331008651|gb|EGH88707.1| type III secretion component [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 259

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 7/165 (4%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDF--RISDNGS-SISVPSSMVGKARIHLAAQGLPSSS 106
           +LY  L   + N +   L    I    ++ DNG   + V      +A   L   GLP  S
Sbjct: 26  DLYTNLGEREANAMLAVLLRDGIPASRKVQDNGQLKVMVDEKRFAQAMAALDDAGLPGQS 85

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            ++  E+F K N    +   +    V AL  E++ T+  I GI++ARVH+V+PD    ++
Sbjct: 86  FSNMGEVF-KGNGLVSSPVQERAQMVYALSEELSHTVSQIDGILSARVHVVLPDNDLLKR 144

Query: 167 IGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTV 209
           + +  +ASV++R  +P   +      I+ LVA  +  L    V+V
Sbjct: 145 VISPSSASVLVR-FDPRTDINVLIPQIKTLVANGISGLGYDGVSV 188


>gi|161520293|ref|YP_001583720.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Burkholderia multivorans ATCC 17616]
 gi|189353528|ref|YP_001949155.1| type III secretion protein SctJ [Burkholderia multivorans ATCC
           17616]
 gi|160344343|gb|ABX17428.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia multivorans ATCC 17616]
 gi|189337550|dbj|BAG46619.1| type III secretion protein SctJ [Burkholderia multivorans ATCC
           17616]
          Length = 293

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 82/173 (47%), Gaps = 18/173 (10%)

Query: 51  LYVKLEVSDVNRISVALSEANI------DFR-ISD-NGSSISVPSSMVGKARIHLAAQGL 102
           LY  L   D N++   L +A I      D R  SD N   +SV    +  A   L A GL
Sbjct: 36  LYSGLSEHDANQMIAVLGDAGISASKDNDARDASDRNAWQVSVADGDMQSALTVLQANGL 95

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMP 159
           P  S  S  ELF K    GL S   E  RVR L G   +++RT+Q I G++ ARV +V+P
Sbjct: 96  PKPSYASLGELFQKQ---GLVSTPAE-ERVRYLYGVSQDLSRTLQDIEGVIVARVQVVIP 151

Query: 160 DMGSFRKIGARPTASVMIRAINPSVYKSAEA--IRHLVAAAVPNLDMGDVTVL 210
           +           +A+V IR   P V   A A  ++ LVA ++  L   +V++ 
Sbjct: 152 ENDPLADKIKPSSAAVYIR-YRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSLF 203


>gi|108759625|ref|YP_633790.1| YscJ/FliF family type III secretion lipoprotein [Myxococcus xanthus
           DK 1622]
 gi|108463505|gb|ABF88690.1| type III secretion lipoprotein, YscJ/FliF family [Myxococcus
           xanthus DK 1622]
          Length = 267

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 81/170 (47%), Gaps = 21/170 (12%)

Query: 55  LEVSDVNRISVALSEANIDFR-ISDNGS----SISVPSSMVGKARIHLAAQGLPSSSSNS 109
           L+    N +   L E  +D R + + G     SI V       A   L+  GLP      
Sbjct: 28  LDERQANELQSVLVERGLDARKVPEAGKKPTWSIEVADEHASDAVRILSELGLPRPKEEV 87

Query: 110 GYELFDKVNSFGL--TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
           G ++F      GL  T   + + RVR +E  + +T+QS+ G++ ARVH+V+P   +  ++
Sbjct: 88  GCDVF---GGGGLVRTPVEESVCRVRVMERSLEKTLQSVEGVLLARVHLVVP---APPRV 141

Query: 168 GARP---TASVMIRAINPS----VYKSAEAIRHLVAAAVPNLDMGDVTVL 210
           G  P    AS M+R + P     V +S+E ++ L+A  V  L    V++L
Sbjct: 142 GQAPGPSKASAMLR-VAPGNAARVRQSSETLKVLLAGGVEGLSPEAVSLL 190


>gi|7025353|gb|AAF35844.1|AF220002_1 flagellar M ring protein FliF [Rhodospirillum centenum]
          Length = 132

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110
           LY  L+ ++  RI   L    + +++S  G +I +P   + + R+ LA QGLPS+   +G
Sbjct: 29  LYAGLDDAEAGRILTQLQSMKVPYQVSGTGGAILLPQDQIARTRMLLAQQGLPSAGG-AG 87

Query: 111 YELFDK 116
           YELFD+
Sbjct: 88  YELFDE 93


>gi|330963702|gb|EGH63962.1| type III secretion component [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 259

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 4/132 (3%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDF--RISDNGS-SISVPSSMVGKARIHLAAQGLPSSS 106
           +LY  L   + N +   L    I    ++ DNG   + V      +A   L   GLP  S
Sbjct: 26  DLYTNLGEREANAMLAVLLRDGIPASRKVQDNGQLKVMVDEKRFAQAMAALDDAGLPGQS 85

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            ++  E+F K N    +   +    V AL  E++ T+  I GI++ARVH+V+PD    ++
Sbjct: 86  FSNMGEVF-KGNGLVSSPVQERAQMVYALSEELSHTVSQIDGILSARVHVVLPDNDLLKR 144

Query: 167 IGARPTASVMIR 178
           + +  +ASV++R
Sbjct: 145 VISPSSASVLVR 156


>gi|221209594|ref|ZP_03582575.1| bcscJ [Burkholderia multivorans CGD1]
 gi|221170282|gb|EEE02748.1| bcscJ [Burkholderia multivorans CGD1]
          Length = 293

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 82/173 (47%), Gaps = 18/173 (10%)

Query: 51  LYVKLEVSDVNRISVALSEANI------DFR-ISD-NGSSISVPSSMVGKARIHLAAQGL 102
           LY  L   D N++   L +A I      D R  SD N   +SV    +  A   L A GL
Sbjct: 36  LYSGLSEHDANQMIAVLGDAGISASKDNDARDASDRNAWQVSVADGDMQSALTVLQANGL 95

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMP 159
           P  S  S  ELF K    GL S   E  RVR L G   +++RT+Q I G++ ARV +V+P
Sbjct: 96  PKPSYASLGELFQKQ---GLVSTPAE-ERVRYLYGVSQDLSRTLQDIEGVIVARVQVVIP 151

Query: 160 DMGSFRKIGARPTASVMIRAINPSVYKSAEA--IRHLVAAAVPNLDMGDVTVL 210
           +           +A+V IR   P V   A A  ++ LVA ++  L   +V++ 
Sbjct: 152 ENDPLADKIKPSSAAVYIR-YRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSLF 203


>gi|221200558|ref|ZP_03573600.1| bcscJ [Burkholderia multivorans CGD2M]
 gi|221209215|ref|ZP_03582206.1| bcscJ [Burkholderia multivorans CGD2]
 gi|221170905|gb|EEE03361.1| bcscJ [Burkholderia multivorans CGD2]
 gi|221179899|gb|EEE12304.1| bcscJ [Burkholderia multivorans CGD2M]
          Length = 293

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 82/173 (47%), Gaps = 18/173 (10%)

Query: 51  LYVKLEVSDVNRISVALSEANI------DFR-ISD-NGSSISVPSSMVGKARIHLAAQGL 102
           LY  L   D N++   L +A I      D R  SD N   +SV    +  A   L A GL
Sbjct: 36  LYSGLSEHDANQMIAVLGDAGISASKDNDARDASDRNAWQVSVADGDMQSALTVLQANGL 95

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMP 159
           P  S  S  ELF K    GL S   E  RVR L G   +++RT+Q I G++ ARV +V+P
Sbjct: 96  PKPSYASLGELFQKQ---GLVSTPAE-ERVRYLYGVSQDLSRTLQDIEGVIVARVQVVIP 151

Query: 160 DMGSFRKIGARPTASVMIRAINPSVYKSAEA--IRHLVAAAVPNLDMGDVTVL 210
           +           +A+V IR   P V   A A  ++ LVA ++  L   +V++ 
Sbjct: 152 ENDPLADKIKPSSAAVYIR-YRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSLF 203


>gi|38639339|gb|AAR25805.1| BcscJ [Burkholderia multivorans E243]
          Length = 293

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 82/173 (47%), Gaps = 18/173 (10%)

Query: 51  LYVKLEVSDVNRISVALSEANI------DFR-ISD-NGSSISVPSSMVGKARIHLAAQGL 102
           LY  L   D N++   L +A I      D R  SD N   +SV    +  A   L A GL
Sbjct: 36  LYSGLSEHDANQMIAVLGDAGISASKDNDARDASDRNAWQVSVADGDMQSALTVLQANGL 95

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMP 159
           P  S  S  ELF K    GL S   E  RVR L G   +++RT+Q I G++ ARV +V+P
Sbjct: 96  PKPSYASLGELFQKQ---GLVSTPAE-ERVRYLYGVSQDLSRTLQDIEGVIVARVQVVIP 151

Query: 160 DMGSFRKIGARPTASVMIRAINPSVYKSAEA--IRHLVAAAVPNLDMGDVTVL 210
           +           +A+V IR   P V   A A  ++ LVA ++  L   +V++ 
Sbjct: 152 ENDPLADKIKPSSAAVYIR-YRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSLF 203


>gi|237678823|emb|CAQ57550.1| RhcJ protein [Bradyrhizobium elkanii]
          Length = 291

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 81/166 (48%), Gaps = 7/166 (4%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDF-RI--SDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
           +LY K++  + N +   L    +D  R+   D  S+I V    +  +   L  +GLP  S
Sbjct: 40  DLYSKIQEREANEMLALLLGKGVDAARVVAKDGTSTIQVEERQLAYSIDLLNVEGLPRQS 99

Query: 107 SNSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
             +  E+F    S  + S ++E  R V AL  E++RTI  I G+++ARVH+V+P     R
Sbjct: 100 FKNLGEVFK--GSGLVASPIEERARYVYALSEELSRTISDIDGVLSARVHVVLPKNDLLR 157

Query: 166 KIGARPTASVMIR-AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
           +     +ASV IR   N  +      I+ LVA ++  L    V V+
Sbjct: 158 QDATPSSASVFIRHGSNAKLSALLPQIKMLVANSIEGLSYDKVAVV 203


>gi|218681694|ref|ZP_03529495.1| nodulation protein [Rhizobium etli CIAT 894]
          Length = 268

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 11/140 (7%)

Query: 24  ILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI-SDNGSS 82
           +L    ++ + LF+AA          ++   L+  D     V L  A I   + S+ G +
Sbjct: 21  VLPKAAMLALCLFLAA-------CSQDVLTGLDQRDALDAQVLLERAGISVTMKSEKGGT 73

Query: 83  ISVPSSMVGKARI--HLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140
            ++ +     AR    LA  GLP  S  +  ELF   N F +T + Q+     A+E ++A
Sbjct: 74  YAIAAETADHARAIELLAGAGLPRQSFGNVAELFPG-NGFLVTPYEQKARMSYAIEQQLA 132

Query: 141 RTIQSISGIVAARVHIVMPD 160
            T+  + G+  ARVH+V+P+
Sbjct: 133 ETLSGLDGVATARVHVVLPE 152


>gi|257487964|ref|ZP_05642005.1| type III secretion component, putative [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 222

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 5/138 (3%)

Query: 75  RISDNGS-SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
           ++ DNG   + V      +A   L   GLP  S ++  E+F K N    +   +    V 
Sbjct: 16  KVQDNGQLKVMVDEKRFAQAMAALDDAGLPGQSFSNMGEVF-KGNGLVSSPVQERAQMVY 74

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYKSAEAI 191
           AL  E++ T+  I GI++ARVH+V+PD    +++ +  +ASV++R  +P   +      I
Sbjct: 75  ALSEELSHTVSQIDGILSARVHVVLPDNDLLKRVISPSSASVLVR-FDPRTDINVLIPQI 133

Query: 192 RHLVAAAVPNLDMGDVTV 209
           + LVA  +  L    V+V
Sbjct: 134 KTLVANGISGLGYDGVSV 151


>gi|289624381|ref|ZP_06457335.1| type III secretion component, putative [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289646620|ref|ZP_06477963.1| type III secretion component, putative [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330868635|gb|EGH03344.1| type III secretion component [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 259

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 7/165 (4%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDF--RISDNGS-SISVPSSMVGKARIHLAAQGLPSSS 106
           +LY  L   + N +   L    I    ++ DNG   + V      +A   L   GLP  S
Sbjct: 26  DLYTNLGEREANAMLAVLLRDGIPASRKVQDNGQLKVMVDEKRFVQAMAALDDAGLPGQS 85

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            ++  E+F K N    +   +    V AL  E++ T+  I GI++ARVH+V+PD    ++
Sbjct: 86  FSNMGEIF-KGNGLVSSPVQERAQMVYALSEELSHTVSQIDGILSARVHVVLPDNDLLKR 144

Query: 167 IGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTV 209
           + +  +ASV++R  +P   +      I+ LVA  +  L    V+V
Sbjct: 145 VISPSSASVLVR-FDPRTDINVLIPQIKTLVANGISGLGYDGVSV 188


>gi|462730|sp|P33209|NOLT_RHIFR RecName: Full=Nodulation protein nolT; Flags: Precursor
 gi|152385|gb|AAB17677.1| nodulation protein [Sinorhizobium fredii]
 gi|19749322|gb|AAL98692.1| NolT [Sinorhizobium fredii]
          Length = 289

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 6/133 (4%)

Query: 50  NLYVKLEVSDVNRISVALSEANID-FRIS--DNGSSISVPSSMVGKARIHLAAQGLPSSS 106
           +LY +L+  + N I   L +  +D  R++  D  S+I V   ++  +   L  +GLP  S
Sbjct: 37  DLYTQLQEREANEIVALLMDNGVDAVRVAGKDGTSTIQVDEKLLAFSIKLLNGKGLPRQS 96

Query: 107 SNSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
             +  E+F    S  + S  +E  R V AL  E++ TI  I G+ +ARVH+V+P     R
Sbjct: 97  FKNLGEIFQ--GSGLIASPTEERARYVYALSEELSHTISDIDGVFSARVHVVLPHNDLLR 154

Query: 166 KIGARPTASVMIR 178
                 +ASV IR
Sbjct: 155 AGDTPSSASVFIR 167


>gi|313634347|gb|EFS00945.1| flagellar M-ring protein FliF [Listeria seeligeri FSL N1-067]
          Length = 380

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 57/253 (22%), Positives = 108/253 (42%), Gaps = 38/253 (15%)

Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLL----TANEMERNILGKSLSIVQAIQHEIEMNI 245
            I+  V+AAVPN+   DV ++D+   ++    T  E   +     + I  AI   ++ +I
Sbjct: 17  GIQRTVSAAVPNVASEDVAIIDTKNGVISEADTTKEEGSSAYKNEVDIQNAIGKNVKTDI 76

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPES 304
              L++   +DNFR      +N D  +     Y  D KV  + +  S D  +  T+  ES
Sbjct: 77  EGTLSSIFALDNFRVNTSVTVNFDEIKQNTERYPNDGKVRSNQKDTSTDTSKGSTNTTES 136

Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
                 ++P+ ++       +   ++K  E +NYE+++ +I     +  L + ++ V V+
Sbjct: 137 GTAANADVPNYTEENGGDTNTY-TSEKSSETTNYELDS-TIQEIKKHPALAKTNVVVWVD 194

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS--------------------RRGD 404
           +        +S +   +D  +AE  K V  + G+                      + GD
Sbjct: 195 Q--------QSLNNNGVD--MAEFTKAVGVSAGLTPNMATPEGAEEGATPTFEGTFQNGD 244

Query: 405 TITITSMDFLENQ 417
            +TI  + FL+NQ
Sbjct: 245 -VTIMPIQFLDNQ 256


>gi|9885635|gb|AAG01458.1|AF282857_7 HrcJ [Pantoea stewartii subsp. stewartii]
          Length = 259

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 20/186 (10%)

Query: 25  LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSIS 84
           L S+IL+ ++L       V   H       L  +D N ++  L   +I      N   I+
Sbjct: 6   LKSLILMSVLLLFGCNDQVELNH------GLTENDANEVAAELGRYHIKAEKHTNKDGIT 59

Query: 85  VPSSMVGKARIH-----LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEI 139
           V   MV  A ++     L A GLP  +  +  E+F K N    T   +    + AL  E+
Sbjct: 60  V---MVDTADLNRAVHILDAAGLPRPTRTNLGEVFQK-NGVISTPLEERARYIYALSQEV 115

Query: 140 ARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEAIRHLVA 196
             T+  I G++ ARVH+V+P+  +  +     +A+V I+    ++P V +    IR +VA
Sbjct: 116 ESTLSQIDGVIVARVHVVLPERVAPGEPILPASAAVFIKYRPELDPDVIEP--RIRQMVA 173

Query: 197 AAVPNL 202
           +++P L
Sbjct: 174 SSLPGL 179


>gi|237800789|ref|ZP_04589250.1| type III secretion component [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331023647|gb|EGI03704.1| type III secretion component [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 259

 Score = 50.4 bits (119), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 4/132 (3%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDF--RISDNGS-SISVPSSMVGKARIHLAAQGLPSSS 106
           +LY  L   + N +   L    I    ++ DNG   + V      +A   L   GLP  +
Sbjct: 26  DLYTNLGEREANAMLAVLLRDGIPASRKVQDNGQLKVMVDEKRFAEAMAALDDAGLPGQT 85

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            ++  E+F K N    +   +    V AL  E++ T+  I GI++ARVH+V+PD    ++
Sbjct: 86  FSNMGEVF-KGNGLVSSPVQERAQMVYALSEELSHTVSQIDGILSARVHVVLPDNDLLKR 144

Query: 167 IGARPTASVMIR 178
           + +  +ASV++R
Sbjct: 145 VISPSSASVLVR 156


>gi|315301967|ref|ZP_07872962.1| flagellar M-ring protein FliF [Listeria ivanovii FSL F6-596]
 gi|313629662|gb|EFR97800.1| flagellar M-ring protein FliF [Listeria ivanovii FSL F6-596]
          Length = 380

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/253 (22%), Positives = 108/253 (42%), Gaps = 38/253 (15%)

Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLL----TANEMERNILGKSLSIVQAIQHEIEMNI 245
            I+  V+AAVPN+   DV ++D+   ++    T+ E   +     + I  AI   ++ +I
Sbjct: 17  GIQRTVSAAVPNVASEDVAIIDTKNGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDI 76

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPES 304
              L++   +DNFR      +N D  +     Y  D KV  + +  S D  +  T+  ES
Sbjct: 77  EGTLSSIFALDNFRVNTSVTVNFDEIKQNTERYPNDGKVRSNQKDTSTDTSKGSTNTTES 136

Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
                 ++P+ ++       +   ++K  E +NYE+++ +I     +  L + ++ V V+
Sbjct: 137 GTAANADVPNYTEENGGDTNTY-TSEKSSETTNYELDS-TIQEIKKHPALAKTNVVVWVD 194

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS--------------------RRGD 404
           +  L        +   +D  +AE  K V  + G+                      + GD
Sbjct: 195 QQAL--------NNNGVD--MAEFTKAVGVSAGLTPNMATPEGAEEGATPTFEGTFQNGD 244

Query: 405 TITITSMDFLENQ 417
            +TI  + FL+NQ
Sbjct: 245 -VTIMPIQFLDNQ 256


>gi|86157134|ref|YP_463919.1| secretory protein YscJ/FliF [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773645|gb|ABC80482.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 239

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 56/105 (53%), Gaps = 9/105 (8%)

Query: 114 FDKVNSFG---LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170
           FD V + G    T+  +    + AL GE+AR+I++I G+V ARVH+ +P    FR  G R
Sbjct: 86  FDAVLAKGSMVPTATEEHAMYLHALSGELARSIEAIDGVVGARVHLGLPQADPFRP-GER 144

Query: 171 PT--ASVMIRAINPSVYKSA---EAIRHLVAAAVPNLDMGDVTVL 210
           P   A+V++R    +          +R LVA A   LD G V+V+
Sbjct: 145 PAPRAAVLVRCRAAACAAVRALEPGLRALVAGAADGLDAGAVSVV 189


>gi|171915741|ref|ZP_02931211.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Verrucomicrobium spinosum DSM 4136]
          Length = 248

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 67/153 (43%), Gaps = 10/153 (6%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS---DNGSSISVPSSM 89
           I L +     V+      L+  L   + N +  AL E ++    +   ++  ++ V S  
Sbjct: 7   ITLCLCGLLLVSCAKQVPLFSDLREEEANEVMAALMERDVACTKTPGKEDKWALQVKSED 66

Query: 90  VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR---ALEGEIARTIQSI 146
              A   L A GLP  S     E+F K    GL S   E  RVR   AL  E++ T   I
Sbjct: 67  FPFAMQTLQAMGLPRQSFQRMGEIFQKS---GLVSSPTE-ERVRFIYALSQELSETFMKI 122

Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
            G+VAARVHI +PD     +     +A+V I+ 
Sbjct: 123 DGVVAARVHIALPDTDPLAEETNPASAAVFIKC 155


>gi|302185345|ref|ZP_07262018.1| putative type III secretion protein [Pseudomonas syringae pv.
           syringae 642]
 gi|256259415|gb|ACU65052.1| HrcJ [Pseudomonas syringae pv. syringae]
          Length = 276

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 90/173 (52%), Gaps = 14/173 (8%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
            L+ KL  +D N +   LS  +I+   R +  G S+ + +S + +A   L A GLP  + 
Sbjct: 25  ELHGKLSENDANDVIAELSSKHIEATKRSNKEGVSVLLSASDINRAVRVLEAAGLPRRTR 84

Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            +  E+F K     +++ ++E  R + AL  E+  T+  I G++ ARVH+V+P+  +  +
Sbjct: 85  TNLGEIFKKEGV--ISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERVAPGE 142

Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
                +A+V I+   +++P        IR +V++++P    G    LD+T KL
Sbjct: 143 PVQPASAAVFIKHAASLDPDTV--LPRIRRMVSSSIP----GMAGALDNTEKL 189


>gi|190894055|ref|YP_001984349.1| nodulation protein [Rhizobium etli CIAT 652]
 gi|190699716|gb|ACE93799.1| nodulation protein [Rhizobium etli CIAT 652]
          Length = 273

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 11/140 (7%)

Query: 24  ILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI-SDNGSS 82
           +L    ++ + LF+AA          ++   L+  D     V L  A I   + S+ G +
Sbjct: 18  VLPKAAMLALCLFLAA-------CSQDVLTGLDQRDALDAQVLLERAGISVTMKSEKGGT 70

Query: 83  ISVPSSMVGKARI--HLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140
            ++ +     AR    LA  GLP  S  +  ELF   N F +T + Q+     A E ++A
Sbjct: 71  YAITAETADHARAIELLAGAGLPRQSFGNVAELFPG-NGFLVTPYEQKARMSYATEQQLA 129

Query: 141 RTIQSISGIVAARVHIVMPD 160
            T+  + G+  ARVH+V+P+
Sbjct: 130 ETLSGLDGVATARVHVVLPE 149


>gi|229588272|ref|YP_002870391.1| putative type III secretion protein [Pseudomonas fluorescens SBW25]
 gi|229360138|emb|CAY46995.1| putative type III secretion protein [Pseudomonas fluorescens SBW25]
          Length = 271

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 93/173 (53%), Gaps = 14/173 (8%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
            L+ +L   + N +   L++ +I  R   + +G ++SV ++ +G+A   L A GLP  + 
Sbjct: 32  ELHRQLSEQEANEVIAELADKHIRARKIPTKDGVTVSVDTNDIGRAVRTLEAVGLPKLAR 91

Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            +  + F K     +++ ++E  R + AL  E+  T+ +I G++ ARVH+V+P+  +  +
Sbjct: 92  ATLGDTFRKEGV--ISTPLEERARYIYALSQELEATLSNIDGVIVARVHVVLPERIAPGE 149

Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
                +ASV I+    ++P   ++   +R +VA+++P    G  T +D+  KL
Sbjct: 150 PVQPASASVFIKHDPRLDPDNIRA--RVRRMVASSIP----GMTTAVDNPQKL 196


>gi|89255318|ref|NP_659983.2| nodulation protein [Rhizobium etli CFN 42]
 gi|89213272|gb|AAM54996.2| nodulation protein [Rhizobium etli CFN 42]
          Length = 273

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 11/140 (7%)

Query: 24  ILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI-SDNGSS 82
           +L    ++   LF+AA          ++   L+  D     V L  A I   + S+ G +
Sbjct: 18  VLPKAAMLAFCLFLAA-------CSQDVLTGLDQRDALDAQVLLERAGISVTMRSEKGGT 70

Query: 83  ISVPSSMVGKARI--HLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140
            ++ +     AR    LA  GLP  S  +  ELF   N F +T + Q+     A+E ++A
Sbjct: 71  YAIAAESADHARAIELLAGAGLPRQSFGNVAELFPG-NGFLVTPYEQKARMSYAIEQQLA 129

Query: 141 RTIQSISGIVAARVHIVMPD 160
            T+  + G+  ARVH+V+P+
Sbjct: 130 ETLSGLDGVATARVHVVLPE 149


>gi|119034700|gb|ABL59995.1| SctJ [Lysobacter enzymogenes]
          Length = 281

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 5/114 (4%)

Query: 51  LYVKLEVSDVNRISVALSEANI----DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
           LY +L+    N +  AL +A I    D   S  G  + V    +  A   L ++GLP + 
Sbjct: 45  LYSQLDEQQANELMAALLDAGIPAEKDPSPSKTGWEVMVNRGDIPYAMQVLNSRGLPRAQ 104

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
             S  E+F K   F  ++  ++   +  L  E++RT+  I G+V ARVHI +PD
Sbjct: 105 YRSLGEVFKK-EGFASSALEEKARYLYGLSQELSRTLTRIDGVVEARVHIALPD 157


>gi|160939666|ref|ZP_02087014.1| hypothetical protein CLOBOL_04558 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437457|gb|EDP15221.1| hypothetical protein CLOBOL_04558 [Clostridium bolteae ATCC
           BAA-613]
          Length = 535

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 107/248 (43%), Gaps = 19/248 (7%)

Query: 44  NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP 103
           N+  Y  L+  +   + N I   L    +  + +D G  ++VP   +G   I ++  G P
Sbjct: 51  NAGSYVTLFPGISREENNEILAVLGGRGVAAKRNDEGE-VTVPEDQLGDIMIEMSELGYP 109

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
            ++    +++F     F  T F +    +  L+  + RT++ ++GI  A V + +PD  +
Sbjct: 110 KTALP--FDIFSDNMGFTTTEFEKRQYLLMNLQDRLERTLKDMTGIKNAIVTLNVPDESA 167

Query: 164 F--RKIGARPTASVMIRAINPSVYKSAE---AIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
           +      +  T SV +  + PS   S E   AI++LVA +VP L    VTV+++     T
Sbjct: 168 YVWEDEDSGSTGSVSL-TLMPSYDLSPEKVSAIKNLVADSVPRLAPERVTVVNAE----T 222

Query: 219 ANEMERNILGKS------LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272
             EM  + +G +      L     ++  ++  I   L      D  R +    ++ D   
Sbjct: 223 MQEMVSDDIGNTAYGLNRLDFEAKVEERLQNKIKNVLTLAYSPDKIRVSATVVIDYDKMI 282

Query: 273 IREIVYDP 280
              + Y+P
Sbjct: 283 TENLEYEP 290


>gi|313639030|gb|EFS04021.1| flagellar M-ring protein FliF [Listeria seeligeri FSL S4-171]
          Length = 380

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/253 (22%), Positives = 107/253 (42%), Gaps = 38/253 (15%)

Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLL----TANEMERNILGKSLSIVQAIQHEIEMNI 245
            I+  V+AAVPN+   DV ++D+   ++    T  E   +     + I  AI   ++ +I
Sbjct: 17  GIQRTVSAAVPNVASEDVAIIDTKNGVISEADTTKEEGSSAYKNEVDIQNAIGKNVKTDI 76

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPES 304
              L++   +DNFR      +N D  +     Y  D KV  + +  S D  +  T+  ES
Sbjct: 77  EGTLSSIFALDNFRVNTSVTVNFDEIKQNTERYPNDGKVRSNQKDTSTDTSKGSTNTTES 136

Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
                 ++P+ ++       +   ++K  E +NYE+++ +I     +  L + ++ V V+
Sbjct: 137 GTASNADVPNYTEENGGDTNTY-TSEKSSETTNYELDS-TIQEIKKHPALAKTNVVVWVD 194

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS--------------------RRGD 404
           +  L        +   +D  +AE  K V  + G+                      + GD
Sbjct: 195 QQAL--------NNNGVD--MAEFTKAVGVSAGLTPNMATPEGAEEGATPTFEGTFQNGD 244

Query: 405 TITITSMDFLENQ 417
            +TI  + FL+NQ
Sbjct: 245 -VTIMPIQFLDNQ 256


>gi|52631916|gb|AAU85366.1| nodulation protein [Sinorhizobium fredii]
          Length = 289

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 6/133 (4%)

Query: 50  NLYVKLEVSDVNRISVALSEANID-FRIS--DNGSSISVPSSMVGKARIHLAAQGLPSSS 106
           +LY +L+  + N +   L +  +D  R++  D  S+I V   ++  +   L  +GLP  S
Sbjct: 37  DLYTQLQEREANEMLALLMDNGVDAVRVAGKDGTSTIQVDEKLLAFSIKLLNGKGLPRQS 96

Query: 107 SNSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
             +  E+F    S  + S  +E  R V AL  E++ TI  I G+ +ARVH+V+P     R
Sbjct: 97  FKNLGEIFQ--GSGLIASPTEERARYVYALSEELSHTISDIDGVFSARVHVVLPHNDLLR 154

Query: 166 KIGARPTASVMIR 178
                 +ASV IR
Sbjct: 155 AGDTPSSASVFIR 167


>gi|307944360|ref|ZP_07659701.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Roseibium sp. TrichSKD4]
 gi|307772706|gb|EFO31926.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Roseibium sp. TrichSKD4]
          Length = 259

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 85/178 (47%), Gaps = 6/178 (3%)

Query: 37  MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI--DFRISDNGSSISVPSSMVGKAR 94
           + A  F+ +     LY  L   + N+I+  L +A I  D     +G SI V  S    A 
Sbjct: 13  LLACLFILAGCKVELYSNLSEQEANQIAATLIDAGISVDKEKLRDGVSILVADSEFANAV 72

Query: 95  IHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAAR 153
             L   GLP+    +  E+F K  S  ++S  +E  R V AL  E+  TI  I G+++AR
Sbjct: 73  NLLNENGLPARRYQNMGEIFQK--SGIVSSPTEEKARFVFALSQELENTIAEIDGVLSAR 130

Query: 154 VHIVMPDMGSFRKIGARPTASVMIRAINP-SVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
           VH+V+P+     +     +AS+ +R +    V K    I+ LV+ ++  L    V+V+
Sbjct: 131 VHVVLPEEDILGRQTEPSSASLFVRHVEGVPVEKLIPRIKMLVSNSIEGLVYERVSVV 188


>gi|188532680|ref|YP_001906477.1| HrcJ protein (hrp cluster) [Erwinia tasmaniensis Et1/99]
 gi|188027722|emb|CAO95575.1| HrcJ protein (hrp cluster) [Erwinia tasmaniensis Et1/99]
          Length = 257

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 77/150 (51%), Gaps = 8/150 (5%)

Query: 58  SDVNRISVALSEANI--DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115
           +D N ++  L   +I  + R + +G ++ V +  + +A   L A GLP  +  +  E+F 
Sbjct: 33  NDANEVAAELGRYHIQAEKRNNKDGITVLVNAEELNRAVHILDAAGLPRPARTNLGEVFQ 92

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
           K N    T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +     +A+V
Sbjct: 93  K-NGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAPGEPVQPASAAV 151

Query: 176 MIRA---INPSVYKSAEAIRHLVAAAVPNL 202
            I+    ++P V +    IR +VA+++P L
Sbjct: 152 FIKYRPDLDPDVIEP--RIRRMVASSLPGL 179


>gi|120609169|ref|YP_968847.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Acidovorax citrulli AAC00-1]
 gi|58700620|gb|AAW81011.1| HrcJ [Acidovorax citrulli]
 gi|120587633|gb|ABM31073.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Acidovorax citrulli AAC00-1]
          Length = 287

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 12/169 (7%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSMVGKARIHLAAQGLPS 104
           D+LY K   +D N +  AL E+ ID     SD G +  + V  S V ++   L + GLP 
Sbjct: 33  DDLYTKQTEADANDMVAALLESGIDAGKATSDAGKTWNVQVEKSDVVRSLAVLRSYGLPR 92

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDM 161
               +  E+F K    GL S   E  RVR + G   ++  T+  I G+V ARV IV+P+ 
Sbjct: 93  ERHATLGEMFKKE---GLISTPTE-ERVRFIYGVAQQLEATLSQIDGVVTARVQIVLPNN 148

Query: 162 GSFRKIGARPTASVMIRAINPS-VYKSAEAIRHLVAAAVPNLDMGDVTV 209
                     +ASV I+    + +      I+++VA +V  L   +VTV
Sbjct: 149 DPLASTVKPASASVFIKYRESANIAGLTAGIKNMVARSVEGLTYENVTV 197


>gi|83647792|ref|YP_436227.1| type III secretory pathway, lipoprotein EscJ [Hahella chejuensis
           KCTC 2396]
 gi|83635835|gb|ABC31802.1| Type III secretory pathway, lipoprotein EscJ [Hahella chejuensis
           KCTC 2396]
          Length = 251

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 74/148 (50%), Gaps = 6/148 (4%)

Query: 78  DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR-VRALE 136
           D    + +P   V +A   L  QG P     +  E+F K     ++S  +E  R + A+ 
Sbjct: 58  DQNVRLKLPEQQVARAISVLQRQGYPKQHFATMGEIFAKDGL--ISSPTEEKARFIYAIS 115

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLV 195
            E++ T+ +I G++ ARVH+VM +   F K     TASV I+ +  +  ++    I+ LV
Sbjct: 116 QELSHTLSNIDGVLVARVHVVMQEGDKFDKNPKPSTASVFIKYVEDAPIETLTPKIKALV 175

Query: 196 AAAVPNLDMGDVTV--LDSTGKLLTANE 221
           + ++  LD   V+V    S+ K +T+ E
Sbjct: 176 SNSILGLDYDQVSVALFPSSLKRITSPE 203


>gi|167567951|ref|ZP_02360867.1| type III secretion associated protein [Burkholderia oklahomensis
           EO147]
 gi|167573175|ref|ZP_02366049.1| type III secretion associated protein [Burkholderia oklahomensis
           C6786]
          Length = 260

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 11/135 (8%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF--RISDNGS--SISVPSSMVGKARIHLAAQGLPSSS 106
           LY  L   DVN + VAL E  +D     +D G   ++ V S  +  A   L A+GLP S 
Sbjct: 18  LYGGLSEQDVNEMLVALLENGVDASKETADGGKNWTLGVESDQLVHAMGVLRARGLPRSK 77

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMGS 163
            +    LF K    GL S   E  R+R + G   E++ T+  I G++ ARV IV+P+   
Sbjct: 78  FDDLGNLFKK---DGLVSTPTE-ERIRFIYGMSQELSSTLSKIDGVLVARVQIVLPNNDP 133

Query: 164 FRKIGARPTASVMIR 178
             +     +ASV I+
Sbjct: 134 LAQAAKPSSASVFIK 148


>gi|307725653|ref|YP_003908866.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia sp. CCGE1003]
 gi|307586178|gb|ADN59575.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia sp. CCGE1003]
          Length = 276

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 65/135 (48%), Gaps = 11/135 (8%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRIS--DNGSS--ISVPSSMVGKARIHLAAQGLPSSS 106
           LY  L   D N + VAL E  +D   S  DNG S  + V    + +A   L  +GLP S 
Sbjct: 35  LYRNLTEQDANEMVVALLEQGVDASKSTVDNGKSWTLEVDDKQLVRAMQVLRERGLPHSR 94

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMGS 163
            +    LF K    GL S   E  RVR + G   E++ T+  I G++ ARV IV+P+   
Sbjct: 95  YDDLGSLFKK---DGLVSTPTE-ERVRFIYGLSQELSATLSKIDGVIVARVQIVLPNNDP 150

Query: 164 FRKIGARPTASVMIR 178
             +     +ASV I+
Sbjct: 151 LAQQMKPSSASVFIK 165


>gi|327192836|gb|EGE59762.1| nodulation protein [Rhizobium etli CNPAF512]
          Length = 250

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 11/134 (8%)

Query: 30  LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI-SDNGSSISVPSS 88
           ++   LF+AA          ++   L+  D     V L  A I   + S+ G + ++ + 
Sbjct: 1   MLAFCLFLAA-------CSQDVLTGLDQRDALDAQVLLERAGISVTMRSEKGGTYAIAAE 53

Query: 89  MVGKARI--HLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146
               AR    LA  GLP  S  +  ELF   N F +T + Q+     A+E ++A T+  +
Sbjct: 54  SADHARAIELLAGAGLPRQSFGNVAELFPG-NGFLVTPYEQKARMSYAIEQQLAETLSGL 112

Query: 147 SGIVAARVHIVMPD 160
            G+  ARVH+V+P+
Sbjct: 113 DGVATARVHVVLPE 126


>gi|320535381|ref|ZP_08035495.1| flagellar M-ring protein FliF [Treponema phagedenis F0421]
 gi|320147783|gb|EFW39285.1| flagellar M-ring protein FliF [Treponema phagedenis F0421]
          Length = 571

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 128/279 (45%), Gaps = 27/279 (9%)

Query: 12  KSGTSL----GRTRI---LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV---N 61
           K+GT L    G+  +   L+LA VIL  I + MA  F  +S       + + +SD     
Sbjct: 11  KTGTKLKELWGKWSVVQKLVLAGVILAAI-IGMAVLFTWSSAPTTVPLIDVPISDEAARE 69

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGK-ARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           +I + L+E NI   +S  G  ISVP     +  R  L  + L   + +  + +FD V  +
Sbjct: 70  KIILRLNEENISASVSATGL-ISVPDEKTARRMRSILIREDLIPKNVDP-WAIFD-VERW 126

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
             T F +++   RA+   +   I+++  +  A V I +P+   F K   +P  + ++   
Sbjct: 127 TRTDFERKVDVRRAINKMVTDHIKALDDVDDANVIINVPEDTLF-KADQKPITASVVLFT 185

Query: 181 NP-----SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMER-NILGKS 230
            P     +  K  + I+ L+  AVP L   ++T+ DS  K+L       +M+R  ++ K 
Sbjct: 186 KPGSDIETDRKKIQGIQKLLKLAVPGLLDENITIADSNAKILNDFEGMKDMDRLTLIEKQ 245

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
             ++  ++ + E+ I   L    G D  R   + +++MD
Sbjct: 246 QKMIAKLETQYEIKILTLLQKTYGKDRVRDLNI-KIDMD 283


>gi|115360597|ref|YP_777734.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Burkholderia ambifaria AMMD]
 gi|115285925|gb|ABI91400.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia ambifaria AMMD]
          Length = 263

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 84/170 (49%), Gaps = 16/170 (9%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDFRIS--DNGSSISVPSSMVGKARIH----LAAQGLP 103
           +LY +L  SD N +  AL  + +D + S  D G + SV  S+  K  +H    L A+G+P
Sbjct: 32  DLYGQLSESDCNEMVAALLSSGVDAQKSTPDGGKTWSV--SVDEKQIVHAVEVLRARGIP 89

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPD 160
               +    LF K    GL S   E  RVR + G   E+  T+  I G+V ARV IV+P+
Sbjct: 90  RKKFDDLGSLFKK---DGLVSTPTE-ERVRFIYGLSQELDDTLSKIDGVVVARVQIVLPN 145

Query: 161 MGSFRKIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209
                +     +ASV I+   + ++ +   AI++LV  ++  L    V+V
Sbjct: 146 NDPLAQSVKPSSASVFIKYRPDANLERMTPAIKNLVVHSIEGLTYDQVSV 195


>gi|326794378|ref|YP_004312198.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Marinomonas mediterranea MMB-1]
 gi|326545142|gb|ADZ90362.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Marinomonas mediterranea MMB-1]
          Length = 265

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 80/159 (50%), Gaps = 10/159 (6%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
            L+ KL   D N +   L+  +I+   + +  G ++ V +S + +A   L A GLP    
Sbjct: 25  ELHKKLSEEDANEVIAELASRHIEAEKKATKEGVTVLVEASSMARAVRILEAAGLPRKPR 84

Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            +  E+F K     ++S ++E  R + AL  E+  TI  I GI+ ARVH+V+P+  +  +
Sbjct: 85  ANFGEVFKKEGV--ISSPLEERARYIYALSQELESTISQIDGILIARVHVVLPERIAPGE 142

Query: 167 IGARPTASVMIRA---INPSVYKSAEAIRHLVAAAVPNL 202
                +++V I+    ++P V +    I  LV  ++P L
Sbjct: 143 AVQPASSAVFIKHRPDLDPDVIRP--RIERLVRTSIPGL 179


>gi|194350719|gb|ACF53790.1| HrcJ [Pantoea stewartii]
          Length = 146

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 14/152 (9%)

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIH-----LAAQGLPSSSSNSGYEL 113
           D N ++  L   +I      N   I+V   MV  A ++     L A GLP  +  +  E+
Sbjct: 1   DANEVAAELGRYHIKAEKHTNKDGITV---MVDTADLNRAVHILDAAGLPRPTRTNLGEV 57

Query: 114 FDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTA 173
           F K N    T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +     +A
Sbjct: 58  FQK-NGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERVAPGEPILPASA 116

Query: 174 SVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202
           +V I+    ++P V +    IR +VA+++P L
Sbjct: 117 AVFIKYRPELDPDVIEP--RIRQMVASSLPGL 146


>gi|170701293|ref|ZP_02892259.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia ambifaria IOP40-10]
 gi|170133816|gb|EDT02178.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia ambifaria IOP40-10]
          Length = 244

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 83/170 (48%), Gaps = 16/170 (9%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDFRIS--DNGSSISVPSSMVGKARIH----LAAQGLP 103
            LY +L  SD N +  AL  + +D + S  D G + SV  S+  K  +H    L A+G+P
Sbjct: 12  ELYGQLSESDCNEMVAALLSSGVDAQKSTPDGGKTWSV--SVDEKQIVHAVEVLRARGIP 69

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPD 160
               +    LF K    GL S   E  RVR + G   E+  T+  I G+V ARV IV+P+
Sbjct: 70  RKKFDDLGSLFKK---DGLVSTPTE-ERVRFIYGLSQELDDTLSKIDGVVVARVQIVLPN 125

Query: 161 MGSFRKIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209
                +     +ASV I+   + ++ +   AI++LV  ++  L    V+V
Sbjct: 126 NDPLAQSVKPSSASVFIKYRPDANLERMTPAIKNLVVHSIEGLTYDQVSV 175


>gi|187919914|ref|YP_001888945.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia phytofirmans PsJN]
 gi|187718352|gb|ACD19575.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia phytofirmans PsJN]
          Length = 273

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 89/189 (47%), Gaps = 31/189 (16%)

Query: 27  SVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF---RISDNGSSI 83
           ++I++P +  +  +         +L+  LE    N+I   LS+  I+    R +D   ++
Sbjct: 4   ALIMLPFLFLIGCK--------SSLFEGLEEDQANQIIAVLSQHGIEGVKDRSADKKWNV 55

Query: 84  SVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIA 140
           SV    V  A        LP  +  +  +LF +    GL S   E  RVR + G   E++
Sbjct: 56  SVDVDDVVSATEITREYALPRDNHANLGDLFSRQ---GLISNPDE-DRVRYVYGLTQELS 111

Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-------AEAIRH 193
            T++ I G++ ARVHIV P+     +  A P+ASVM+R      Y+S        + IR+
Sbjct: 112 ETLEKIDGVLVARVHIVQPERDPLMRQVAPPSASVMLR------YRSDYNLEYMRDKIRN 165

Query: 194 LVAAAVPNL 202
           LVA +V  L
Sbjct: 166 LVAGSVEGL 174


>gi|218458744|ref|ZP_03498835.1| nodulation protein [Rhizobium etli Kim 5]
          Length = 246

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 11/130 (8%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI-SDNGSSISVPSSMVGK 92
            LF+AA          ++   L+  D     V L  A I   + S+ G + ++ +     
Sbjct: 1   CLFLAA-------CSQDVLTGLDQRDALDAQVLLERAGISVTMRSEKGGTYAIAAESADH 53

Query: 93  ARI--HLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
           AR    LA  GLP  S  +  ELF   N F +T + Q+     A+E ++A T+  + G+ 
Sbjct: 54  ARAIELLAGAGLPRQSFENVAELFPG-NGFLVTPYEQKARMSYAIEQQLAETLSGLDGVA 112

Query: 151 AARVHIVMPD 160
            ARVH+V+P+
Sbjct: 113 TARVHVVLPE 122


>gi|172064921|ref|YP_001815633.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Burkholderia ambifaria MC40-6]
 gi|171997163|gb|ACB68080.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia ambifaria MC40-6]
          Length = 264

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 83/169 (49%), Gaps = 16/169 (9%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRIS--DNGSSISVPSSMVGKARIH----LAAQGLPS 104
           LY +L  SD N +  AL  + +D + S  D G + SV  S+  K  +H    L A+G+P 
Sbjct: 33  LYGQLSESDCNEMVAALLSSGVDAQKSTPDGGKTWSV--SVDEKQIVHAVEVLRARGIPR 90

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDM 161
              +    LF K    GL S   E  RVR + G   E+  T+  I G+V ARV IV+P+ 
Sbjct: 91  KKFDDLGSLFKK---DGLVSTPTE-ERVRFIYGLSQELDDTLSKIDGVVVARVQIVLPNN 146

Query: 162 GSFRKIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209
               +     +ASV I+   + ++ +   AI++LV  ++  L    V+V
Sbjct: 147 DPLAQSVKPSSASVFIKYRPDANLERMTPAIKNLVVHSIEGLTYDQVSV 195


>gi|254469855|ref|ZP_05083260.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Pseudovibrio sp. JE062]
 gi|211961690|gb|EEA96885.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Pseudovibrio sp. JE062]
          Length = 267

 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 78/165 (47%), Gaps = 7/165 (4%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
           +LY  L   + N +   L E  +  +   + D   ++ V    + +A   L A GLP  +
Sbjct: 22  DLYTNLSEQEANTMLSLLLENGVSAQKVGLGDGLVTLQVDDDDIQRAVTILNANGLPKRA 81

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            ++  ++F K      + F + I  + AL  E++ TI  I GIV+ARVHIV+P+     +
Sbjct: 82  RDTLGQVFQKSGIIS-SPFEERIRFIYALSEEVSETITEIDGIVSARVHIVLPEKADLGE 140

Query: 167 IGARPTASVMIRAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTV 209
              +P+++ +     P   +      I+ LV+ A+  ++   V+V
Sbjct: 141 -EVKPSSAAIFIKHRPEFDIEFLIPQIKRLVSNAIEGVEYASVSV 184


>gi|167906939|ref|ZP_02494144.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei NCTC 13177]
          Length = 269

 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 18/170 (10%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIH----LAAQGLPS 104
           LY  L   DVN + VAL E  +D     +D G S  +  ++ G   +H    L  +GLP 
Sbjct: 27  LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKL--NVDGDQLVHAMEVLRTRGLPR 84

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDM 161
           S  +    LF K    GL S   E  R+R + G   E++ T+  I G++ ARV IV+P+ 
Sbjct: 85  SKFDDLGNLFKK---DGLVSTPTE-ERIRFIYGMSQELSSTLSKIDGVLVARVQIVLPNN 140

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTV 209
               +  A+P+++ +     PS   +A    I+ LV  +V  L    V+V
Sbjct: 141 DPLAQT-AKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTYDQVSV 189


>gi|167915298|ref|ZP_02502389.1| type III secretion associated protein [Burkholderia pseudomallei
           112]
          Length = 262

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 18/170 (10%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIH----LAAQGLPS 104
           LY  L   DVN + VAL E  +D     +D G S  +  ++ G   +H    L  +GLP 
Sbjct: 20  LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKL--NVDGDQLVHAMEVLRTRGLPR 77

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDM 161
           S  +    LF K    GL S   E  R+R + G   E++ T+  I G++ ARV IV+P+ 
Sbjct: 78  SKFDDLGNLFKK---DGLVSTPTE-ERIRFIYGMSQELSSTLSKIDGVLVARVQIVLPNN 133

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTV 209
               +  A+P+++ +     PS   +A    I+ LV  +V  L    V+V
Sbjct: 134 DPLAQT-AKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTYDQVSV 182


>gi|76818699|ref|YP_335583.1| lipoprotein transmembrane protein [Burkholderia pseudomallei 1710b]
 gi|76583172|gb|ABA52646.1| lipoprotein transmembrane protein [Burkholderia pseudomallei 1710b]
          Length = 262

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 18/170 (10%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIH----LAAQGLPS 104
           LY  L   DVN + VAL E  +D     +D G S  +  ++ G   +H    L  +GLP 
Sbjct: 20  LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKL--NVDGDQLVHAMEVLRTRGLPR 77

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDM 161
           S  +    LF K    GL S   E  R+R + G   E++ T+  I G++ ARV IV+P+ 
Sbjct: 78  SKFDDLGNLFKK---DGLVSTPTE-ERIRFIYGMSQELSSTLSKIDGVLVARVQIVLPNN 133

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTV 209
               +  A+P+++ +     PS   +A    I+ LV  +V  L    V+V
Sbjct: 134 DPLAQT-AKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTYDQVSV 182


>gi|254186712|ref|ZP_04893228.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|254263992|ref|ZP_04954857.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 1710a]
 gi|157934396|gb|EDO90066.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|254214994|gb|EET04379.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 1710a]
          Length = 269

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 18/170 (10%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIH----LAAQGLPS 104
           LY  L   DVN + VAL E  +D     +D G S  +  ++ G   +H    L  +GLP 
Sbjct: 27  LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKL--NVDGDQLVHAMEVLRTRGLPR 84

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDM 161
           S  +    LF K    GL S   E  R+R + G   E++ T+  I G++ ARV IV+P+ 
Sbjct: 85  SKFDDLGNLFKK---DGLVSTPTE-ERIRFIYGMSQELSSTLSKIDGVLVARVQIVLPNN 140

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTV 209
               +  A+P+++ +     PS   +A    I+ LV  +V  L    V+V
Sbjct: 141 DPLAQT-AKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTYDQVSV 189


>gi|126442940|ref|YP_001062988.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Burkholderia pseudomallei 668]
 gi|126458134|ref|YP_001075935.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Burkholderia pseudomallei 1106a]
 gi|167828530|ref|ZP_02460001.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 9]
 gi|226199084|ref|ZP_03794646.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei Pakistan 9]
 gi|242313688|ref|ZP_04812705.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 1106b]
 gi|254183797|ref|ZP_04890389.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 1655]
 gi|254193806|ref|ZP_04900238.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei S13]
 gi|254301608|ref|ZP_04969052.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 406e]
 gi|126222431|gb|ABN85936.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 668]
 gi|126231902|gb|ABN95315.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 1106a]
 gi|157811474|gb|EDO88644.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 406e]
 gi|169650557|gb|EDS83250.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei S13]
 gi|184214330|gb|EDU11373.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 1655]
 gi|225928859|gb|EEH24884.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei Pakistan 9]
 gi|242136927|gb|EES23330.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 1106b]
          Length = 269

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 18/170 (10%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIH----LAAQGLPS 104
           LY  L   DVN + VAL E  +D     +D G S  +  ++ G   +H    L  +GLP 
Sbjct: 27  LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKL--NVDGDQLVHAMEVLRTRGLPR 84

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDM 161
           S  +    LF K    GL S   E  R+R + G   E++ T+  I G++ ARV IV+P+ 
Sbjct: 85  SKFDDLGNLFKK---DGLVSTPTE-ERIRFIYGMSQELSSTLSKIDGVLVARVQIVLPNN 140

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTV 209
               +  A+P+++ +     PS   +A    I+ LV  +V  L    V+V
Sbjct: 141 DPLAQT-AKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTYDQVSV 189


>gi|167898597|ref|ZP_02485998.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 7894]
 gi|237509740|ref|ZP_04522455.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei MSHR346]
 gi|235001945|gb|EEP51369.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei MSHR346]
          Length = 269

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 18/170 (10%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIH----LAAQGLPS 104
           LY  L   DVN + VAL E  +D     +D G S  +  ++ G   +H    L  +GLP 
Sbjct: 27  LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKL--NVDGDQLVHAMEVLRTRGLPR 84

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDM 161
           S  +    LF K    GL S   E  R+R + G   E++ T+  I G++ ARV IV+P+ 
Sbjct: 85  SKFDDLGNLFKK---DGLVSTPTE-ERIRFIYGMSQELSSTLSKIDGVLVARVQIVLPNN 140

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTV 209
               +  A+P+++ +     PS   +A    I+ LV  +V  L    V+V
Sbjct: 141 DPLAQT-AKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTYDQVSV 189


>gi|167820155|ref|ZP_02451835.1| type III secretion associated protein [Burkholderia pseudomallei
           91]
          Length = 262

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 18/170 (10%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIH----LAAQGLPS 104
           LY  L   DVN + VAL E  +D     +D G S  +  ++ G   +H    L  +GLP 
Sbjct: 20  LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKL--NVDGDQLVHAMEVLRTRGLPR 77

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDM 161
           S  +    LF K    GL S   E  R+R + G   E++ T+  I G++ ARV IV+P+ 
Sbjct: 78  SKFDDLGNLFKK---DGLVSTPTE-ERIRFIYGMSQELSSTLSKIDGVLVARVQIVLPNN 133

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTV 209
               +  A+P+++ +     PS   +A    I+ LV  +V  L    V+V
Sbjct: 134 DPLAQT-AKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTYDQVSV 182


>gi|167724015|ref|ZP_02407251.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei DM98]
 gi|167849989|ref|ZP_02475497.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei B7210]
          Length = 262

 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 18/170 (10%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIH----LAAQGLPS 104
           LY  L   DVN + VAL E  +D     +D G S  +  ++ G   +H    L  +GLP 
Sbjct: 20  LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKL--NVDGDQLVHAMEVLRTRGLPR 77

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDM 161
           S  +    LF K    GL S   E  R+R + G   E++ T+  I G++ ARV IV+P+ 
Sbjct: 78  SKFDDLGNLFKK---DGLVSTPTE-ERIRFIYGMSQELSSTLSKIDGVLVARVQIVLPNN 133

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTV 209
               +  A+P+++ +     PS   +A    I+ LV  +V  L    V+V
Sbjct: 134 DPLAQT-AKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTYDQVSV 182


>gi|217425426|ref|ZP_03456920.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 576]
 gi|217391677|gb|EEC31705.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 576]
          Length = 274

 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 18/170 (10%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIH----LAAQGLPS 104
           LY  L   DVN + VAL E  +D     +D G S  +  ++ G   +H    L  +GLP 
Sbjct: 32  LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKL--NVDGDQLVHAMEVLRTRGLPR 89

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDM 161
           S  +    LF K    GL S   E  R+R + G   E++ T+  I G++ ARV IV+P+ 
Sbjct: 90  SKFDDLGNLFKK---DGLVSTPTE-ERIRFIYGMSQELSSTLSKIDGVLVARVQIVLPNN 145

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTV 209
               +  A+P+++ +     PS   +A    I+ LV  +V  L    V+V
Sbjct: 146 DPLAQT-AKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTYDQVSV 194


>gi|282890725|ref|ZP_06299245.1| type III secretion lipoprotein SctJ [Parachlamydia acanthamoebae
           str. Hall's coccus]
 gi|281499318|gb|EFB41617.1| type III secretion lipoprotein SctJ [Parachlamydia acanthamoebae
           str. Hall's coccus]
          Length = 304

 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 88/199 (44%), Gaps = 20/199 (10%)

Query: 30  LVPIMLFMAARFFVNSPHYDNLYVK-LEVSDVNRISVALSEANID---FRISDNGSS--- 82
           +V I+    + F + S   +   V  +   D N I V L+  NI+      S+ G +   
Sbjct: 5   IVKIVYLFISLFLLTSCSSERTIVHGIREQDANEIIVFLNSKNIESTKVESSEGGGTGPQ 64

Query: 83  ------ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA-L 135
                 I VP +    A   L  +GLP     S  ++F   +S  + S  QE  R +A L
Sbjct: 65  KAVFWDIQVPENKAMDAMSFLDEEGLPRKHQESLLDIFG--SSSLVPSETQERIRYQAGL 122

Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARP-TASVMIR---AINPSVYKSAEAI 191
             +IA TI+ I G++ A V I  P+        + P TASV I+    ++    +    I
Sbjct: 123 AQQIANTIKEIDGVIDANVMISFPEENPITGTTSGPITASVYIKHNGILDDPNSQLRSKI 182

Query: 192 RHLVAAAVPNLDMGDVTVL 210
           R LVAA+V  L   +VT++
Sbjct: 183 RQLVAASVTGLKYDNVTII 201


>gi|310766432|gb|ADP11382.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
           pathway-hrcJ protein [Erwinia sp. Ejp617]
          Length = 259

 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 14/153 (9%)

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIH-----LAAQGLPSSSSNSGYE 112
           +D N ++  L   +I      N   I+V   MV  A ++     L A GLP  +  +  E
Sbjct: 33  NDANEVAAELGRYHIQAEKLANKDGITV---MVDAAELNRAVHILDAAGLPRPARTNLGE 89

Query: 113 LFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPT 172
           +F K N    T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +     +
Sbjct: 90  VFQK-NGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAPGEPVQPAS 148

Query: 173 ASVMIRA---INPSVYKSAEAIRHLVAAAVPNL 202
           A+V I+    ++P + +    IR +VA+++P L
Sbjct: 149 AAVFIKYRPDLDPDIIEP--RIRRMVASSLPGL 179


>gi|53722424|ref|YP_111409.1| type III secretion associated protein [Burkholderia pseudomallei
           K96243]
 gi|52212838|emb|CAH38872.1| putative type III secretion associated protein [Burkholderia
           pseudomallei K96243]
          Length = 274

 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 18/170 (10%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIH----LAAQGLPS 104
           LY  L   DVN + VAL E  +D     +D G S  +  ++ G   +H    L  +GLP 
Sbjct: 32  LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKL--NVDGDQLVHAMEVLRTRGLPR 89

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDM 161
           S  +    LF K    GL S   E  R+R + G   E++ T+  I G++ ARV IV+P+ 
Sbjct: 90  SKFDDLGNLFKK---DGLVSTPTE-ERIRFIYGMSQELSSTLSKIDGVLVARVQIVLPNN 145

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTV 209
               +  A+P+++ +     PS   +A    I+ LV  +V  L    V+V
Sbjct: 146 DPLAQT-AKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTYDQVSV 194


>gi|254253717|ref|ZP_04947034.1| Type III secretory pathway lipoprotein EscJ [Burkholderia dolosa
           AUO158]
 gi|124898362|gb|EAY70205.1| Type III secretory pathway lipoprotein EscJ [Burkholderia dolosa
           AUO158]
          Length = 263

 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 82/169 (48%), Gaps = 16/169 (9%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRIS--DNGSSISVPSSMVGKARIH----LAAQGLPS 104
           LY +L  SD N +  AL  + +D + S  D G + SV   +  K  +H    L A+GLP 
Sbjct: 33  LYGQLTESDCNEMVAALLMSGVDAQKSTPDGGKTWSV--GVDEKQIVHAVEVLRARGLPR 90

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDM 161
              +    LF K    GL S   E  RVR + G   E+  T+  I G+V ARV IV+P+ 
Sbjct: 91  KKFDDLGSLFKK---DGLVSTPTE-ERVRFIYGLSQELDDTLSKIDGVVVARVQIVLPNN 146

Query: 162 GSFRKIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209
               +     +ASV I+   + ++ +   AI++LV  ++  L    V+V
Sbjct: 147 DPLAQSVKPSSASVFIKYRPDANLERMTPAIKNLVVHSIEGLTYDQVSV 195


>gi|167742984|ref|ZP_02415758.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 14]
          Length = 274

 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 18/170 (10%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIH----LAAQGLPS 104
           LY  L   DVN + VAL E  +D     +D G S  +  ++ G   +H    L  +GLP 
Sbjct: 32  LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKL--NVDGDQLVHAMEVLRTRGLPR 89

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDM 161
           S  +    LF K    GL S   E  R+R + G   E++ T+  I G++ ARV IV+P+ 
Sbjct: 90  SKFDDLGNLFKK---DGLVSTPTE-ERIRFIYGMSQELSSTLSKIDGVLVARVQIVLPNN 145

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTV 209
               +  A+P+++ +     PS   +A    I+ LV  +V  L    V+V
Sbjct: 146 DPLAQT-AKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTYDQVSV 194


>gi|259909704|ref|YP_002650060.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
           pathway-hrcJ protein [Erwinia pyrifoliae Ep1/96]
 gi|76152302|gb|ABA39803.1| HrcJ [Erwinia pyrifoliae]
 gi|224965326|emb|CAX56858.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
           pathway-hrcJ protein [Erwinia pyrifoliae Ep1/96]
 gi|283479790|emb|CAY75706.1| Type III secretion inner-membreane protein HrcJ [Erwinia pyrifoliae
           DSM 12163]
          Length = 259

 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 14/153 (9%)

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIH-----LAAQGLPSSSSNSGYE 112
           +D N ++  L   +I      N   I+V   MV  A ++     L A GLP  +  +  E
Sbjct: 33  NDANEVAAELGRYHIQAEKLANKDGITV---MVDAAELNRAVHILDAAGLPRPARTNLGE 89

Query: 113 LFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPT 172
           +F K N    T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +     +
Sbjct: 90  VFQK-NGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAPGEPVQPAS 148

Query: 173 ASVMIRA---INPSVYKSAEAIRHLVAAAVPNL 202
           A+V I+    ++P + +    IR +VA+++P L
Sbjct: 149 AAVFIKYRPDLDPDIIEP--RIRRMVASSLPGL 179


>gi|14719872|gb|AAK73236.1| SctJ [Burkholderia pseudomallei]
 gi|48479054|gb|AAT44850.1| lipoprotein transmembrane protein [Burkholderia pseudomallei]
          Length = 274

 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 18/170 (10%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIH----LAAQGLPS 104
           LY  L   DVN + VAL E  +D     +D G S  +  ++ G   +H    L  +GLP 
Sbjct: 32  LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKL--NVDGDQLVHAMEVLRTRGLPR 89

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDM 161
           S  +    LF K    GL S   E  R+R + G   E++ T+  I G++ ARV IV+P+ 
Sbjct: 90  SKFDDLGNLFKK---DGLVSTPTE-ERIRFIYGMSQELSSTLSKIDGVLVARVQIVLPNN 145

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTV 209
               +  A+P+++ +     PS   +A    I+ LV  +V  L    V+V
Sbjct: 146 DPLAQT-AKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTYDQVSV 194


>gi|134282581|ref|ZP_01769285.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 305]
 gi|134246138|gb|EBA46228.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 305]
          Length = 269

 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 18/170 (10%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIH----LAAQGLPS 104
           LY  L   DVN + VAL E  +D     +D G S  +  ++ G   +H    L  +GLP 
Sbjct: 27  LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKL--NVDGDQLVHAMEVLRTRGLPR 84

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDM 161
           S  +    LF K    GL S   E  R+R + G   E++ T+  I G++ ARV IV+P+ 
Sbjct: 85  SKFDDLGNLFKK---DGLVSTPTE-ERIRFIYGMSQELSSTLSKIDGVLVARVQIVLPNN 140

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTV 209
               +  A+P+++ +     PS   +A    I+ LV  +V  L    V+V
Sbjct: 141 DPLAQT-AKPSSAAVFIKYRPSADITALTPQIKTLVMHSVEGLTYDQVSV 189


>gi|296103639|ref|YP_003613785.1| flagellar M-ring protein FliF [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295058098|gb|ADF62836.1| flagellar M-ring protein FliF [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 268

 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 5/85 (5%)

Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI-DSYLAEI 388
           ++ +E +N+E++   I T  +  +++RLS+AVV+N   L +  G     G I ++ L  I
Sbjct: 68  NRSDETTNFEVDRTLIHTKSNAGRIQRLSVAVVIN--HLPQ--GEEGKPGPISEAELTRI 123

Query: 389 NKIVSAATGINSRRGDTITITSMDF 413
           N +V  A G N+ RGD++ I +  F
Sbjct: 124 NALVKEAIGFNASRGDSVNILNSAF 148


>gi|146305070|ref|YP_001185535.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Pseudomonas mendocina ymp]
 gi|145573271|gb|ABP82803.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Pseudomonas mendocina ymp]
          Length = 272

 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 80/159 (50%), Gaps = 10/159 (6%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           +L+  L   D N +  +L E  I  R      G  ++V ++ + +A   L A GLP  + 
Sbjct: 23  DLFSGLSELDANEVIASLGEHRISARKRAEKAGVVVTVDTAEINRAVRVLEAAGLPRRAR 82

Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            S  E+F K     +++ ++E  R + AL  E+  T+  I G++ ARVH+V+P+  +  +
Sbjct: 83  TSLGEIFKKEGV--ISTPLEERARYIYALSQELESTLSQIDGVIVARVHVVLPERIAPGE 140

Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202
                +A+V I+   ++ P   +    I+ +V +++P L
Sbjct: 141 PVQPASAAVFIKHAASLEPDAVQ--RRIQQMVVSSIPGL 177


>gi|15042153|gb|AAK81934.1|AF292566_18 RscJ [Pseudomonas fluorescens]
          Length = 271

 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 94/173 (54%), Gaps = 14/173 (8%)

Query: 50  NLYVKLEVSDVNRISVALSEANID-FRI-SDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
            L+ +L   + N +   L++ +I   +I + +G ++SV ++ +G+A   L A GLP  + 
Sbjct: 32  ELHRQLSEQEANEVIAELADKHIRALQIPTKDGVTVSVDTNDIGRAVRTLEAVGLPKLAR 91

Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            +  + F K     +++ ++E  R + AL  E+  T+ +I G++ ARVH+V+P+  +  +
Sbjct: 92  ATLGDTFRKEGV--ISTPLEERARYIYALSQELEATLSNIDGVIVARVHVVLPERIAPGE 149

Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
                +ASV I+    ++P   ++   +R +VA+++P    G  T +D+  KL
Sbjct: 150 PVQPASASVFIKHDPRLDPDNIRA--RVRRMVASSIP----GMTTAVDNPQKL 196


>gi|168334480|ref|ZP_02692651.1| flagellar M-ring protein FliF [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 533

 Score = 47.0 bits (110), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 80/178 (44%), Gaps = 7/178 (3%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           F +SP    LY  L++  +++I   L   NI + + D G +I V    +  A+I L  + 
Sbjct: 44  FFSSPQTAILYQNLDMEAISQIDEVLGANNITYELID-GRTIQVNEEDLNTAKIILTREN 102

Query: 102 LPSSSSNSGYELFDKV-NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP- 159
           +P       Y  +D + NS   T   +    +   + ++   +  + GI  A V + +P 
Sbjct: 103 VPRGD----YTFYDAITNSMSTTEAEKRTKLIYLKQVDLENILMGMEGIAEATVQLNVPE 158

Query: 160 DMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
           +  SF       +ASV++           E I  L++ AV NL + ++T+LDS   +L
Sbjct: 159 EKNSFIASQMESSASVVLTLHRQISDNQIEGIARLLSNAVDNLKLENITILDSDSNVL 216


>gi|329889303|ref|ZP_08267646.1| hypothetical protein BDIM_09830 [Brevundimonas diminuta ATCC 11568]
 gi|328844604|gb|EGF94168.1| hypothetical protein BDIM_09830 [Brevundimonas diminuta ATCC 11568]
          Length = 240

 Score = 47.0 bits (110), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 76/165 (46%), Gaps = 6/165 (3%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSM--VGKARIHLAAQGLPSSSS 107
            LY  L   D N +   L    +D   + +G +  + +      +A   L  +G P  + 
Sbjct: 23  ELYGGLTERDANEMVAVLKAQGLDASKTRDGDNWVLKADRGDFSRAVALLHDRGYPRQNF 82

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
            S  E+F K   F  +   Q +  + AL+ E+ +TI SI G+V ARVHI +P+     + 
Sbjct: 83  ASMGEVFQK-EGFVSSPMEQRMRMMYALQQELGQTISSIDGVVQARVHIAVPESDPLAQE 141

Query: 168 GARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVL 210
               +ASV I+   P    SA+  +I+ LV  ++  L    VTV+
Sbjct: 142 KPPSSASVFIKH-RPDYDISAQTGSIKALVVNSIEGLPYDKVTVV 185


>gi|312171103|emb|CBX79362.1| Type III secretion inner-membreane protein HrcJ [Erwinia amylovora
           ATCC BAA-2158]
          Length = 260

 Score = 47.0 bits (110), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 75/150 (50%), Gaps = 8/150 (5%)

Query: 58  SDVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115
           +D N ++  L   +I      N  G ++ V ++ + +A   L A GLP  +  +  E+F 
Sbjct: 33  NDANEVAAELGRYHIQAEKLTNKEGITVLVDAAELNRAVHILDAAGLPRPARTNLGEVFQ 92

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
           K N    T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +     +A+V
Sbjct: 93  K-NGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAPGEPVQPASAAV 151

Query: 176 MIRA---INPSVYKSAEAIRHLVAAAVPNL 202
            I+    ++P V +    IR +VA+++P L
Sbjct: 152 FIKYRPDLDPDVIEP--RIRRMVASSLPGL 179


>gi|302670718|ref|YP_003830678.1| flagellar M-ring protein FliF [Butyrivibrio proteoclasticus B316]
 gi|302395191|gb|ADL34096.1| flagellar M-ring protein FliF [Butyrivibrio proteoclasticus B316]
          Length = 539

 Score = 47.0 bits (110), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 103/224 (45%), Gaps = 18/224 (8%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           A   ++L ++   T+  +T I+   +V+L+ I++ +     +N P Y  L       + +
Sbjct: 7   AAWQKVLDWWNQFTAKQKTLIVGAGTVVLLTIIILVTV---LNQPQYVLLAQATSTKEAS 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN--S 119
            I   L   +I++++SD+G    V       A + L A  + S +        D V   S
Sbjct: 64  EIKDLLDSNSINYKMSDDGLEFRVLKKDQANANLILGANDIQSYAYT-----IDNVTEGS 118

Query: 120 FGLTSFMQEITRVRALEGEIART-IQSISGIVAARVHIVMP-DMGSFRKIGARPTAS--V 175
           F  T + ++   V+ LE ++    +     I +A V + +P D G+   IG +  AS  +
Sbjct: 119 FSTTEYDKQKKYVKYLESKLEHDMLAKFDTIDSANVTLHIPDDDGTL--IGNKDEASAWI 176

Query: 176 MIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
           ++   +P+ +  ++A  +   VAA++      D+ +LD +G LL
Sbjct: 177 LLNINDPNGFGEENANFVAKAVAASLGKKSTNDIVILDYSGNLL 220


>gi|194350691|gb|ACF53776.1| HrcJ [Brenneria lupinicola]
          Length = 146

 Score = 47.0 bits (110), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 8/149 (5%)

Query: 59  DVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
           D N ++  L   +I      N  G ++ V ++ + +A   L A GLP  +  +  E+F K
Sbjct: 1   DANEVAAELGRYHIQAEKLTNKEGITVLVDAAELNRAVHILDAAGLPRPARTNLGEVFQK 60

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
            N    T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +     +A+V 
Sbjct: 61  -NGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAPGEPVQPASAAVF 119

Query: 177 IRA---INPSVYKSAEAIRHLVAAAVPNL 202
           I+    ++P V +    IR +VA+++P L
Sbjct: 120 IKYRPDLDPDVVEP--RIRRMVASSLPGL 146


>gi|292487032|ref|YP_003529902.1| type III secretion inner-membreane protein HrcJ [Erwinia amylovora
           CFBP1430]
 gi|292900583|ref|YP_003539952.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|1336088|gb|AAB49174.1| HrcJ [Erwinia amylovora]
 gi|291200431|emb|CBJ47559.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|291552449|emb|CBA19494.1| Type III secretion inner-membreane protein HrcJ [Erwinia amylovora
           CFBP1430]
          Length = 260

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 75/150 (50%), Gaps = 8/150 (5%)

Query: 58  SDVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115
           +D N ++  L   +I      N  G ++ V ++ + +A   L A GLP  +  +  E+F 
Sbjct: 33  NDANEVAAELGRYHIQAEKLTNKEGITVLVDAAELNRAVHILDAAGLPRPARTNLGEVFQ 92

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
           K N    T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +     +A+V
Sbjct: 93  K-NGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAPGEPVQPASAAV 151

Query: 176 MIRA---INPSVYKSAEAIRHLVAAAVPNL 202
            I+    ++P V +    IR +VA+++P L
Sbjct: 152 FIKYRPDLDPDVIEP--RIRRMVASSLPGL 179


>gi|194350683|gb|ACF53772.1| HrcJ [Erwinia mallotivora]
 gi|194350685|gb|ACF53773.1| HrcJ [Erwinia mallotivora]
 gi|194350693|gb|ACF53777.1| HrcJ [Brenneria lupinicola]
          Length = 146

 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 8/149 (5%)

Query: 59  DVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
           D N ++  L   +I      N  G ++ V ++ + +A   L A GLP  +  +  E+F K
Sbjct: 1   DANEVAAELGRYHIQAEKLTNKEGITVLVDAAELNRAVHILDAAGLPRPARTNLGEVFQK 60

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
            N    T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +     +A+V 
Sbjct: 61  -NGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAPGEPVQPASAAVF 119

Query: 177 IRA---INPSVYKSAEAIRHLVAAAVPNL 202
           I+    ++P V +    IR +VA+++P L
Sbjct: 120 IKYRPDLDPDVIEP--RIRRMVASSLPGL 146


>gi|167923131|ref|ZP_02510222.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei BCC215]
          Length = 243

 Score = 46.6 bits (109), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 81/170 (47%), Gaps = 18/170 (10%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIH----LAAQGLPS 104
           +Y  L   DVN + VAL E  +D     +D G S  +  ++ G   +H    L  +GLP 
Sbjct: 1   MYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKL--NVDGDQLVHAMEVLRTRGLPR 58

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDM 161
           S  +    LF K    GL S   E  R+R + G   E++ T+  I G++ ARV IV+P+ 
Sbjct: 59  SKFDDLGNLFKK---DGLVSTPTE-ERIRFIYGMSQELSSTLSKIDGVLVARVQIVLPNN 114

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTV 209
               +  A+P+++ +     PS   +A    I+ LV  +V  L    V+V
Sbjct: 115 DPLAQT-AKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTYDQVSV 163


>gi|194350699|gb|ACF53780.1| HrcJ [Erwinia pyrifoliae]
          Length = 146

 Score = 46.6 bits (109), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 14/152 (9%)

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIH-----LAAQGLPSSSSNSGYEL 113
           D N ++  L   +I      N   I+V   MV  A ++     L A GLP  +  +  E+
Sbjct: 1   DANEVAAELGRYHIQAEKLANKDGITV---MVDAAELNRAVHILDAAGLPRPARTNLGEV 57

Query: 114 FDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTA 173
           F K N    T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +     +A
Sbjct: 58  FQK-NGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAPGEPVQPASA 116

Query: 174 SVMIRA---INPSVYKSAEAIRHLVAAAVPNL 202
           +V I+    ++P + +    IR +VA+++P L
Sbjct: 117 AVFIKYRPDLDPDIIEP--RIRRMVASSLPGL 146


>gi|13475299|ref|NP_106863.1| nodulation protein NOLT [Mesorhizobium loti MAFF303099]
 gi|14026050|dbj|BAB52649.1| nodulation protein; NolT [Mesorhizobium loti MAFF303099]
          Length = 279

 Score = 46.6 bits (109), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 69/134 (51%), Gaps = 8/134 (5%)

Query: 50  NLYVKLEVSDVNRISVALSEANID-FRIS--DNGSSISVPSSMVGKARIHLAAQGLPSSS 106
           +LY +L+  + N +   L +  +   R++  D  S++ V   ++  +   L  +GLP  S
Sbjct: 27  DLYTQLQEREANEMLALLMDNGVHAVRVAAKDGTSTVQVDEKLLAYSIDLLNGKGLPRQS 86

Query: 107 SNSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
             +  E+F    S  + S  +E  R V AL  E++RTI  I G+ + RVH+V+P     R
Sbjct: 87  FKNLGEIFQ--GSGLIASPTEERARYVYALSEELSRTISDIDGVFSVRVHVVLPHNDLLR 144

Query: 166 KIGARP-TASVMIR 178
             GA P +ASV IR
Sbjct: 145 A-GATPSSASVFIR 157


>gi|170690590|ref|ZP_02881757.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia graminis C4D1M]
 gi|170145025|gb|EDT13186.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia graminis C4D1M]
          Length = 282

 Score = 46.2 bits (108), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 66/138 (47%), Gaps = 15/138 (10%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDFRIS--DNGSSISVPSSMVGKARIH----LAAQGLP 103
            LY  L   D N + VAL E  +D   S  DNG + ++   +  K  +H    L  +GLP
Sbjct: 40  ELYRNLTEQDANEMVVALLEQGVDASKSTIDNGKTWTL--EVDDKQLVHAMQVLRERGLP 97

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPD 160
            S  +    LF K    GL S   E  RVR + G   E++ T+  I G++ ARV IV+P+
Sbjct: 98  HSRYDDLGSLFKK---DGLVSTPTE-ERVRFIYGLSQELSATLSKIDGVIVARVQIVLPN 153

Query: 161 MGSFRKIGARPTASVMIR 178
                +     +ASV I+
Sbjct: 154 NDPLAQQMKPSSASVFIK 171


>gi|323143306|ref|ZP_08077997.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Succinatimonas hippei YIT 12066]
 gi|322416923|gb|EFY07566.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Succinatimonas hippei YIT 12066]
          Length = 252

 Score = 46.2 bits (108), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 85/198 (42%), Gaps = 15/198 (7%)

Query: 21  RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR-ISD- 78
           R   L S +++  ML    R        + LY  L  SD N +   L +  +D + IS+ 
Sbjct: 2   RFKFLGSAVILSAMLLCGCR--------EALYSNLTESDANEMLSTLLQRGVDAKKISEG 53

Query: 79  -NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV-RALE 136
            NG +I V    + ++   +    LP     S   +F       ++S  +E  R+  AL 
Sbjct: 54  KNGFTIEVDEQDLVRSLEIIKEHSLPREQFQSLGSVFSGQGM--ISSQTEEQARLAYALS 111

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS-VYKSAEAIRHLV 195
            E++ T   I G++ ARVH+V+        +   P+A+V IR    S V     +I+   
Sbjct: 112 QELSATFSRIDGVLDARVHVVLVQHEQSSGVTTPPSAAVFIRHTKESPVVDMISSIKDTT 171

Query: 196 AAAVPNLDMGDVTVLDST 213
           A +VP L    V V+  T
Sbjct: 172 ARSVPGLTHDRVAVMTET 189


>gi|171316789|ref|ZP_02906000.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia ambifaria MEX-5]
 gi|171098047|gb|EDT42863.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia ambifaria MEX-5]
          Length = 241

 Score = 46.2 bits (108), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 6/165 (3%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDFRISDNGSS----ISVPSSMVGKARIHLAAQGLPSS 105
           +LY  L   D N +  AL E  ID      G+     +SVP      A   L  +GLP  
Sbjct: 16  SLYENLTEQDANEMIAALFENGIDASKQRGGNGKFWMVSVPEGEFAGAINVLRDRGLPQE 75

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
             +    LF K + F  T   + +  +  L  E++ TI +I G++ ARV IV+P+     
Sbjct: 76  KRDDLGNLFKK-DGFVSTPTEERVRFLYGLSQELSSTISAIDGVMVARVQIVLPNNDPLA 134

Query: 166 KIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209
           +     +ASV I+   + SV +    I+ LV  +V  L    V+V
Sbjct: 135 EQVKPSSASVFIKYNADSSVGQIVPQIKTLVVNSVEGLAYERVSV 179


>gi|323530318|ref|YP_004232470.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia sp. CCGE1001]
 gi|323387320|gb|ADX59410.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia sp. CCGE1001]
          Length = 282

 Score = 46.2 bits (108), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 65/136 (47%), Gaps = 11/136 (8%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDFRIS--DNGSS--ISVPSSMVGKARIHLAAQGLPSS 105
            LY  L   D N + VAL E  +D   S  DNG +  + V    + +A   L  +GLP +
Sbjct: 40  ELYRNLTEQDANEMVVALLEQGVDASKSTVDNGKTWTLEVDDKQLVRAMQVLRERGLPHN 99

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMG 162
             +    LF K    GL S   E  RVR + G   E++ T+  I G++ ARV IV+P+  
Sbjct: 100 RYDDLGSLFKK---DGLVSTPTE-ERVRFIYGLSQELSATLSKIDGVIVARVQIVLPNND 155

Query: 163 SFRKIGARPTASVMIR 178
              +     +ASV I+
Sbjct: 156 PLAQQMKPSSASVFIK 171


>gi|330819406|ref|YP_004348268.1| Type III secretion apparatus lipoprotein, YscJ/HrcJ family protein
           [Burkholderia gladioli BSR3]
 gi|327371401|gb|AEA62756.1| Type III secretion apparatus lipoprotein, YscJ/HrcJ family protein
           [Burkholderia gladioli BSR3]
          Length = 277

 Score = 45.8 bits (107), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 60/117 (51%), Gaps = 11/117 (9%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSMVGKARIHLAAQGLPSSS 106
           LY  L   DVN + VAL E  +D      D G +  + V    + +A   L ++GLP S 
Sbjct: 30  LYGNLSEQDVNEMVVALLENGVDAAKETPDGGKTWTLEVDGDQMVRAMEALRSRGLPKSR 89

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPD 160
            ++  +LF K    GL S   E  RVR + G   E++ T+  I G++ ARV IV+P+
Sbjct: 90  FDNLGDLFKK---DGLVSTPTE-ERVRFIYGMSQELSSTLSKIDGVLVARVQIVLPN 142


>gi|195941355|ref|ZP_03086737.1| flagellar MS-ring protein [Borrelia burgdorferi 80a]
 gi|224533205|ref|ZP_03673805.1| flagellar M-ring protein FliF [Borrelia burgdorferi WI91-23]
 gi|226320592|ref|ZP_03796152.1| flagellar M-ring protein FliF [Borrelia burgdorferi 29805]
 gi|224511932|gb|EEF82333.1| flagellar M-ring protein FliF [Borrelia burgdorferi WI91-23]
 gi|226234011|gb|EEH32732.1| flagellar M-ring protein FliF [Borrelia burgdorferi 29805]
 gi|312149702|gb|ADQ29773.1| flagellar M-ring protein FliF [Borrelia burgdorferi N40]
          Length = 569

 Score = 45.8 bits (107), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 51/236 (21%), Positives = 107/236 (45%), Gaps = 27/236 (11%)

Query: 55  LEVSD---VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGY 111
           +E+ D   ++RIS  L   N+ + +S +G        +  K R  L  + L     +  +
Sbjct: 56  VEIKDQYLLDRISQRLDRENVKYFLSSDGRIYLDDEKLAKKMRAILVREELVPVHMDP-W 114

Query: 112 ELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR------ 165
            LFD ++ + +T F + I   R++   + + I ++  + A  V++VMP+   F+      
Sbjct: 115 ALFD-IDRWTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKESQEPV 173

Query: 166 ----KIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---- 217
               +I  RP + ++         K  E +  L+  A+  L+  ++ ++D++G +L    
Sbjct: 174 KASVRITPRPGSDIITNR------KKVEGLVKLIQYAIEGLESDNIAIVDNSGTILNDFS 227

Query: 218 TANEMER-NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272
             + ++R ++  K   +    +  +   I+ AL+  L VD F  A V  + +DT +
Sbjct: 228 NLDGIDRIDLAEKERKLKLKYEAMLRSEIDSALSKVLSVDRFMIARV-NVKLDTSK 282


>gi|94496761|ref|ZP_01303336.1| hrp conserved lipoprotein hrcj transmembrane [Sphingomonas sp.
           SKA58]
 gi|94423774|gb|EAT08800.1| hrp conserved lipoprotein hrcj transmembrane [Sphingomonas sp.
           SKA58]
          Length = 246

 Score = 45.8 bits (107), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 11/168 (6%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDFRIS---DNGSSISVPSSMVGKARIHLAAQGLPSSS 106
            +Y +L+    N +  AL +A+ID   S   D   +++V      KA   L A+GLP   
Sbjct: 25  EIYGQLKEGQANDMIAALRDAHIDAAKSADKDGQWAVAVSPDDFSKAIQLLRAKGLPRED 84

Query: 107 SNSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
             +   LF+K     ++S ++E  R +  L  E++ T+  I G+V ARVH+ MP+     
Sbjct: 85  FANLGSLFEKKGL--VSSPVEERARLIYGLSQELSHTVSEIDGVVQARVHLAMPEADPLS 142

Query: 166 -KIGARPTASVMIRAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVL 210
            KI  +P ++ +     P   +     AI+ LV  ++  L    V+V+
Sbjct: 143 DKI--KPASAAIFVKYQPGYDLRSQTGAIKSLVTNSIEGLAYDKVSVV 188


>gi|224531746|ref|ZP_03672378.1| flagellar M-ring protein FliF [Borrelia valaisiana VS116]
 gi|224511211|gb|EEF81617.1| flagellar M-ring protein FliF [Borrelia valaisiana VS116]
          Length = 569

 Score = 45.8 bits (107), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 53/245 (21%), Positives = 109/245 (44%), Gaps = 27/245 (11%)

Query: 55  LEVSD---VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGY 111
           +E+ D   ++RIS  L   N+ + +S +G        +  K R  L  + L     +  +
Sbjct: 56  VEIKDQYLLDRISQRLDRENVKYFLSSDGRIYLDDEKLAKKMRAILVREELVPIHMDP-W 114

Query: 112 ELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR------ 165
            LFD ++ + +T F + I   R++   + + I ++  + A  V++VMP+   F+      
Sbjct: 115 ALFD-IDRWTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKEAQEPV 173

Query: 166 ----KIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---- 217
               +I  RP + ++         K  E +  L+  A+  L+  ++ ++D++G +L    
Sbjct: 174 KASVRITPRPGSDIITNR------KKVEGLVKLIQYAIEGLESDNIAIVDNSGTILNDFS 227

Query: 218 TANEMER-NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVV-AELNMDTQQIRE 275
             + ++R ++  K   +    +  +   I+ AL+  L VD F  A V  +L+   + I  
Sbjct: 228 NLDGIDRIDLAEKERKLKLKYEAMLRGEIDSALSKVLSVDRFMIARVNVKLDTSKETIES 287

Query: 276 IVYDP 280
             Y P
Sbjct: 288 KEYAP 292


>gi|15594636|ref|NP_212425.1| flagellar MS-ring protein [Borrelia burgdorferi B31]
 gi|216264746|ref|ZP_03436738.1| flagellar M-ring protein FliF [Borrelia burgdorferi 156a]
 gi|218249820|ref|YP_002374814.1| flagellar M-ring protein FliF [Borrelia burgdorferi ZS7]
 gi|221217640|ref|ZP_03589108.1| flagellar M-ring protein FliF [Borrelia burgdorferi 72a]
 gi|223888733|ref|ZP_03623324.1| flagellar M-ring protein FliF [Borrelia burgdorferi 64b]
 gi|224533718|ref|ZP_03674306.1| flagellar M-ring protein FliF [Borrelia burgdorferi CA-11.2a]
 gi|225549084|ref|ZP_03770059.1| flagellar M-ring protein FliF [Borrelia burgdorferi 94a]
 gi|225550193|ref|ZP_03771153.1| flagellar M-ring protein FliF [Borrelia burgdorferi 118a]
 gi|226321609|ref|ZP_03797135.1| flagellar M-ring protein FliF [Borrelia burgdorferi Bol26]
 gi|3915695|sp|Q44912|FLIF_BORBU RecName: Full=Flagellar M-ring protein
 gi|1165275|gb|AAA85614.1| FliF [Borrelia burgdorferi]
 gi|1196318|gb|AAB51410.1| flagellar basal body rod protein [Borrelia burgdorferi]
 gi|2688175|gb|AAC66657.1| flagellar basal-body rod protein (fliF) [Borrelia burgdorferi B31]
 gi|215981219|gb|EEC22026.1| flagellar M-ring protein FliF [Borrelia burgdorferi 156a]
 gi|218165008|gb|ACK75069.1| flagellar M-ring protein FliF [Borrelia burgdorferi ZS7]
 gi|221192317|gb|EEE18536.1| flagellar M-ring protein FliF [Borrelia burgdorferi 72a]
 gi|223885549|gb|EEF56648.1| flagellar M-ring protein FliF [Borrelia burgdorferi 64b]
 gi|224513011|gb|EEF83374.1| flagellar M-ring protein FliF [Borrelia burgdorferi CA-11.2a]
 gi|225369305|gb|EEG98758.1| flagellar M-ring protein FliF [Borrelia burgdorferi 118a]
 gi|225370310|gb|EEG99748.1| flagellar M-ring protein FliF [Borrelia burgdorferi 94a]
 gi|226232798|gb|EEH31551.1| flagellar M-ring protein FliF [Borrelia burgdorferi Bol26]
 gi|312147990|gb|ADQ30649.1| flagellar M-ring protein FliF [Borrelia burgdorferi JD1]
          Length = 569

 Score = 45.8 bits (107), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 51/236 (21%), Positives = 107/236 (45%), Gaps = 27/236 (11%)

Query: 55  LEVSD---VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGY 111
           +E+ D   ++RIS  L   N+ + +S +G        +  K R  L  + L     +  +
Sbjct: 56  VEIKDQYLLDRISQRLDRENVKYFLSSDGRIYLDDEKLAKKMRAILVREELVPVHMDP-W 114

Query: 112 ELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR------ 165
            LFD ++ + +T F + I   R++   + + I ++  + A  V++VMP+   F+      
Sbjct: 115 ALFD-IDRWTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKESQEPV 173

Query: 166 ----KIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---- 217
               +I  RP + ++         K  E +  L+  A+  L+  ++ ++D++G +L    
Sbjct: 174 KASVRITPRPGSDIITNR------KKVEGLVKLIQYAIEGLESDNIAIVDNSGTILNDFS 227

Query: 218 TANEMER-NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272
             + ++R ++  K   +    +  +   I+ AL+  L VD F  A V  + +DT +
Sbjct: 228 NLDGIDRIDLAEKERKLKLKYEAMLRGEIDSALSKVLSVDRFMIARV-NVKLDTSK 282


>gi|238023713|ref|YP_002907945.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family protein
           [Burkholderia glumae BGR1]
 gi|237878378|gb|ACR30710.1| Type III secretion apparatus lipoprotein, YscJ/HrcJ family protein
           [Burkholderia glumae BGR1]
          Length = 280

 Score = 45.8 bits (107), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 12/167 (7%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSMVGKARIHLAAQGLPSSS 106
           LY  L   DVN + VAL E  +D      D G +  + V    + +A   L ++GLP S 
Sbjct: 30  LYGNLSEQDVNEMVVALLENGVDASKETPDAGKTWTLEVDGDQMVRAMEALRSRGLPKSR 89

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMGS 163
            ++  +LF K    GL S   E  RVR + G   E++ T+  I G++ ARV IV+P+   
Sbjct: 90  FDNLGDLFKK---DGLVSTPTE-ERVRFIYGMSQELSSTLSKIDGVLVARVQIVLPNNDP 145

Query: 164 FRKIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209
             +     +A+V I+   N  V      I+ LV  +V  L    V+V
Sbjct: 146 LAQTIKPSSAAVFIKYRPNSDVGALVPQIKTLVMHSVEGLTYDQVSV 192


>gi|89111146|dbj|BAE80236.1| HrcJ [Acidovorax avenae subsp. avenae]
          Length = 287

 Score = 45.4 bits (106), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 81/169 (47%), Gaps = 12/169 (7%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSMVGKARIHLAAQGLPS 104
           D+LY +   +D N +  AL E+ ID     +D G +  + V  S V ++   L + GLP 
Sbjct: 33  DDLYTRQTEADANDMVAALLESGIDAGKASADAGKTWNVQVEKSDVVRSLAVLRSYGLPR 92

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDM 161
               +  E+F K    GL S   E  RVR + G   ++  T+  I G+V ARV IV+P+ 
Sbjct: 93  ERHATLGEMFKKE---GLISTPTE-ERVRFIYGVAQQLEATLSQIDGVVTARVQIVLPNN 148

Query: 162 GSFRKIGARPTASVMIRAINPS-VYKSAEAIRHLVAAAVPNLDMGDVTV 209
                     +ASV I+    + +      I+++VA +V  L   +VTV
Sbjct: 149 DPLASTVKPASASVFIKYRESANIAGLTAGIKNMVARSVEGLTYENVTV 197


>gi|227820519|ref|YP_002824490.1| type III secretion component, RhcJ protein [Sinorhizobium fredii
           NGR234]
 gi|227339518|gb|ACP23737.1| type III secretion component, RhcJ protein [Sinorhizobium fredii
           NGR234]
          Length = 267

 Score = 45.4 bits (106), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 80/169 (47%), Gaps = 13/169 (7%)

Query: 50  NLYVKLEVSDVNR-ISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
           +LY  L+  + N  ++  LS+     R+   D   +++V  +   +A   L   GLP   
Sbjct: 29  DLYTNLDEREANEMVATLLSKGIAAGRVVQKDGKLTVTVDENEFSEAVTALNMAGLPKQK 88

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             +   +F +      +   +    + AL  E++RT+  I G+++ARVH+V+PD    ++
Sbjct: 89  FATLGSVFQQ-EGLVASPVQERAQMIYALSEELSRTVSEIDGVLSARVHVVLPDNDPLQR 147

Query: 167 IGARPTASVMIRA-----INPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
                +ASV IR      +NP + +    I+ LVA ++  L    V+V+
Sbjct: 148 NAIPASASVFIRHEAGLDVNPLIPR----IKTLVANSISGLTYEKVSVV 192


>gi|111115116|ref|YP_709734.1| flagellar MS-ring protein [Borrelia afzelii PKo]
 gi|216264082|ref|ZP_03436076.1| flagellar M-ring protein FliF [Borrelia afzelii ACA-1]
 gi|110890390|gb|ABH01558.1| flagellar basal-body rod protein [Borrelia afzelii PKo]
 gi|215980126|gb|EEC20948.1| flagellar M-ring protein FliF [Borrelia afzelii ACA-1]
          Length = 569

 Score = 45.4 bits (106), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 51/236 (21%), Positives = 106/236 (44%), Gaps = 27/236 (11%)

Query: 55  LEVSD---VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGY 111
           +E+ D   ++RIS  L   N+ + +S +G        +  K R  L  + L     +  +
Sbjct: 56  VEIKDQYLLDRISQRLDRENVKYFLSSDGRIYLDDEKLAKKMRAILVREELVPVHMDP-W 114

Query: 112 ELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR------ 165
            LFD ++ + +T F + I   R++   + + I ++  + A  V++VMP+   F+      
Sbjct: 115 ALFD-IDRWTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKESQEPV 173

Query: 166 ----KIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---- 217
               +I  RP + ++         K  E +  L+  A+  L+  ++ ++D++G +L    
Sbjct: 174 KASVRITPRPGSDIITNR------KKVEGLVKLIQYAIEGLESDNIAIVDNSGTILNDFS 227

Query: 218 TANEMER-NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272
             + ++R ++  K   +    +  +   I+ AL   L VD F  A V  + +DT +
Sbjct: 228 NLDGIDRIDLAEKERKLKLKYEAMLRGEIDTALGKVLSVDRFMIARV-NVKLDTSK 282


>gi|220915860|ref|YP_002491164.1| secretory protein YscJ/FliF family protein [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219953714|gb|ACL64098.1| secretory protein YscJ/FliF family protein [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 239

 Score = 45.4 bits (106), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 7/134 (5%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRIS-----DNGSSISVPSSMVGKARIHLAAQGLP 103
           + L   L+    N + VAL E  I    +     D G  + V ++   +AR  LA + LP
Sbjct: 20  EALLHGLDEPQANDVLVALDEGGIAAEKAREDGADAGWEVRVAAADAVRARRVLAERDLP 79

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
                +G++      S   T+  +    + AL GE+AR+I++I G+V ARVH+ +P    
Sbjct: 80  RQRP-AGFDAVLAKGSMVPTATEEHALYLHALSGELARSIEAIDGVVGARVHLGLPQADP 138

Query: 164 FRKIGARPTASVMI 177
           FR  G RP     +
Sbjct: 139 FRP-GERPAPRAAV 151


>gi|15605288|ref|NP_220074.1| Yop proteins translocation lipoprotein J [Chlamydia trachomatis
           D/UW-3/CX]
 gi|76789296|ref|YP_328382.1| SctJ [Chlamydia trachomatis A/HAR-13]
 gi|237804910|ref|YP_002889064.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis B/TZ1A828/OT]
 gi|3329000|gb|AAC68161.1| Yop proteins translocation lipoprotein J [Chlamydia trachomatis
           D/UW-3/CX]
 gi|76167826|gb|AAX50834.1| SctJ [Chlamydia trachomatis A/HAR-13]
 gi|231273210|emb|CAX10123.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis B/TZ1A828/OT]
 gi|296436092|gb|ADH18266.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis G/9768]
 gi|296437020|gb|ADH19190.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis G/11222]
 gi|296437953|gb|ADH20114.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis G/11074]
 gi|297140453|gb|ADH97211.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis G/9301]
          Length = 326

 Score = 45.4 bits (106), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 94/198 (47%), Gaps = 31/198 (15%)

Query: 34  MLFMAARFFVNSPHYDNLYVK-LEVSDVNRISVALSEANIDFR-----ISDNGSS----- 82
           + F+ A FF ++    ++    L   D N I V L    +  +      S  G S     
Sbjct: 10  LFFILALFFCSACDSRSMITHGLSGRDANEIVVLLVSKGVAAQKVPQAASSTGGSGEQLW 69

Query: 83  -ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT-SFMQEITRVRALEG--- 137
            ISVP++ + +A   L   GLP     S  +LF K    GL  S MQE  ++R  EG   
Sbjct: 70  DISVPAAQITEALAILNQAGLPRMKGTSLLDLFAKQ---GLVPSEMQE--KIRYQEGLSE 124

Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARP-TASVMI--RAI--NPSVYKSAEAIR 192
           ++A TI+ + GIV A V I      S  +   RP TASV I  R +  NP+    ++ I+
Sbjct: 125 QMATTIRKMDGIVDASVQISF----SPEEEDQRPLTASVYIKHRGVLDNPNSIMVSK-IK 179

Query: 193 HLVAAAVPNLDMGDVTVL 210
            LVA+AVP L   +V+V+
Sbjct: 180 RLVASAVPGLCPENVSVV 197


>gi|255311377|ref|ZP_05353947.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis 6276]
 gi|255317678|ref|ZP_05358924.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis 6276s]
          Length = 326

 Score = 45.4 bits (106), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 94/198 (47%), Gaps = 31/198 (15%)

Query: 34  MLFMAARFFVNSPHYDNLYVK-LEVSDVNRISVALSEANIDFR-----ISDNGSS----- 82
           + F+ A FF ++    ++    L   D N I V L    +  +      S  G S     
Sbjct: 10  LFFILALFFCSACDSRSMITHGLSGRDANEIVVLLVSKGVAAQKVPQAASSTGGSGEQLW 69

Query: 83  -ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT-SFMQEITRVRALEG--- 137
            ISVP++ + +A   L   GLP     S  +LF K    GL  S MQE  ++R  EG   
Sbjct: 70  DISVPAAQITEALAILNQAGLPRMKGTSLLDLFAKQ---GLVPSEMQE--KIRYQEGLSE 124

Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARP-TASVMI--RAI--NPSVYKSAEAIR 192
           ++A TI+ + GIV A V I      S  +   RP TASV I  R +  NP+    ++ I+
Sbjct: 125 QMATTIRKMDGIVDASVQISF----SPEEEDQRPLTASVYIKHRGVLDNPNSIMVSK-IK 179

Query: 193 HLVAAAVPNLDMGDVTVL 210
            LVA+AVP L   +V+V+
Sbjct: 180 RLVASAVPGLCPENVSVV 197


>gi|326315351|ref|YP_004233023.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|89111179|dbj|BAE80268.1| HrcJ [Acidovorax avenae subsp. avenae]
 gi|323372187|gb|ADX44456.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 287

 Score = 45.1 bits (105), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 81/169 (47%), Gaps = 12/169 (7%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSMVGKARIHLAAQGLPS 104
           D+L+ +   +D N +  AL E+ ID     SD G +  + V  S V ++   L + GLP 
Sbjct: 33  DDLFTRQTEADANDMVAALLESGIDAGKATSDAGKTWNVQVEKSDVVRSLAVLRSYGLPR 92

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDM 161
               +  E+F K    GL S   E  RVR + G   ++  T+  I G+V ARV IV+P+ 
Sbjct: 93  ERHATLGEMFKKE---GLISTPTE-ERVRFIYGVAQQLEATLSQIDGVVTARVQIVLPNN 148

Query: 162 GSFRKIGARPTASVMIRAINPS-VYKSAEAIRHLVAAAVPNLDMGDVTV 209
                     +A+V I+    + +      I+++VA +V  L   +VTV
Sbjct: 149 DPLASTVKPASAAVFIKYRESANIAGLTAGIKNMVARSVEGLTYENVTV 197


>gi|255348939|ref|ZP_05380946.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis 70]
 gi|255503478|ref|ZP_05381868.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis 70s]
 gi|255507156|ref|ZP_05382795.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis D(s)2923]
 gi|289525604|emb|CBJ15082.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis Sweden2]
 gi|296435164|gb|ADH17342.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis E/150]
 gi|296438884|gb|ADH21037.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis E/11023]
          Length = 326

 Score = 45.1 bits (105), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 94/198 (47%), Gaps = 31/198 (15%)

Query: 34  MLFMAARFFVNSPHYDNLYVK-LEVSDVNRISVALSEANIDFR-----ISDNGSS----- 82
           + F+ A FF ++    ++    L   D N I V L    +  +      S  G S     
Sbjct: 10  LFFILALFFCSACDSRSMITHGLSGRDANEIVVLLVSKGVAAQKVPQAASSTGGSGEQLW 69

Query: 83  -ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT-SFMQEITRVRALEG--- 137
            ISVP++ + +A   L   GLP     S  +LF K    GL  S MQE  ++R  EG   
Sbjct: 70  DISVPAAQITEALAILNQAGLPRMKGTSLLDLFAKQ---GLVPSEMQE--KIRYQEGLSE 124

Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARP-TASVMI--RAI--NPSVYKSAEAIR 192
           ++A TI+ + GIV A V I      S  +   RP TASV I  R +  NP+    ++ I+
Sbjct: 125 QMATTIRKMDGIVDASVQISF----SPEEEDQRPLTASVYIKHRGVLDNPNSIMVSK-IK 179

Query: 193 HLVAAAVPNLDMGDVTVL 210
            LVA+AVP L   +V+V+
Sbjct: 180 RLVASAVPGLCPENVSVV 197


>gi|297748689|gb|ADI51235.1| type III secretion cytoplasmic membrane protein SctJ [Chlamydia
           trachomatis D-EC]
 gi|297749569|gb|ADI52247.1| type III secretion cytoplasmic membrane protein SctJ [Chlamydia
           trachomatis D-LC]
          Length = 333

 Score = 45.1 bits (105), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 94/198 (47%), Gaps = 31/198 (15%)

Query: 34  MLFMAARFFVNSPHYDNLYVK-LEVSDVNRISVALSEANIDFR-----ISDNGSS----- 82
           + F+ A FF ++    ++    L   D N I V L    +  +      S  G S     
Sbjct: 17  LFFILALFFCSACDSRSMITHGLSGRDANEIVVLLVSKGVAAQKVPQAASSTGGSGEQLW 76

Query: 83  -ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT-SFMQEITRVRALEG--- 137
            ISVP++ + +A   L   GLP     S  +LF K    GL  S MQE  ++R  EG   
Sbjct: 77  DISVPAAQITEALAILNQAGLPRMKGTSLLDLFAKQ---GLVPSEMQE--KIRYQEGLSE 131

Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARP-TASVMI--RAI--NPSVYKSAEAIR 192
           ++A TI+ + GIV A V I      S  +   RP TASV I  R +  NP+    ++ I+
Sbjct: 132 QMATTIRKMDGIVDASVQISF----SPEEEDQRPLTASVYIKHRGVLDNPNSIMVSK-IK 186

Query: 193 HLVAAAVPNLDMGDVTVL 210
            LVA+AVP L   +V+V+
Sbjct: 187 RLVASAVPGLCPENVSVV 204


>gi|237802988|ref|YP_002888182.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis B/Jali20/OT]
 gi|231274222|emb|CAX11016.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis B/Jali20/OT]
          Length = 326

 Score = 45.1 bits (105), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 94/198 (47%), Gaps = 31/198 (15%)

Query: 34  MLFMAARFFVNSPHYDNLYVK-LEVSDVNRISVALSEANIDFR-----ISDNGSS----- 82
           + F+ A FF ++    ++    L   D N I V L    +  +      S  G S     
Sbjct: 10  LFFILALFFCSACDSRSMITHGLSGRDANEIVVLLVSKGVAAQKVPQAASSTGGSGEQLW 69

Query: 83  -ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT-SFMQEITRVRALEG--- 137
            ISVP++ + +A   L   GLP     S  +LF K    GL  S MQE  ++R  EG   
Sbjct: 70  DISVPAAQITEALAILNQAGLPRMKGTSLLDLFAKQ---GLVPSEMQE--KIRYQEGLSE 124

Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARP-TASVMI--RAI--NPSVYKSAEAIR 192
           ++A TI+ + GIV A V I      S  +   RP TASV I  R +  NP+    ++ I+
Sbjct: 125 QMATTIRKMDGIVDASVQISF----SPEEEDQRPLTASVYIKYRGVLDNPNSIMVSK-IK 179

Query: 193 HLVAAAVPNLDMGDVTVL 210
            LVA+AVP L   +V+V+
Sbjct: 180 RLVASAVPGLCPENVSVV 197


>gi|194350695|gb|ACF53778.1| HrcJ [Erwinia psidii]
          Length = 146

 Score = 45.1 bits (105), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 73/149 (48%), Gaps = 8/149 (5%)

Query: 59  DVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
           D N ++  L   +I      N  G ++ V ++ + +A   L A GLP  +  +  E+F K
Sbjct: 1   DANEVAAELGRYHIQAEKLTNKEGITVLVDAAELNRAVHILDAAGLPRPARTNLGEVFQK 60

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
                 T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +     +A+V 
Sbjct: 61  DGVIS-TPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAPGEPVQPASAAVF 119

Query: 177 IRA---INPSVYKSAEAIRHLVAAAVPNL 202
           I+    ++P V +    IR +VA+++P L
Sbjct: 120 IKYRPDLDPDVIEP--RIRRMVASSLPGL 146


>gi|51598551|ref|YP_072739.1| flagellar MS-ring protein [Borrelia garinii PBi]
 gi|51573122|gb|AAU07147.1| flagellar basal-body rod protein [Borrelia garinii PBi]
          Length = 569

 Score = 45.1 bits (105), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 50/236 (21%), Positives = 107/236 (45%), Gaps = 27/236 (11%)

Query: 55  LEVSD---VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGY 111
           +E+ D   ++RIS  L   N+ + +S +G        +  K R  L  + L     +  +
Sbjct: 56  VEIKDQYLLDRISQRLDRENVKYFLSSDGRIYLDDEKLAKKMRAILVREELVPVHMDP-W 114

Query: 112 ELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR------ 165
            LFD ++ + +T F + I   R++   + + I ++  + A  V++VMP+   F+      
Sbjct: 115 ALFD-IDRWTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKEAQEPV 173

Query: 166 ----KIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---- 217
               +I  RP + ++         K  E +  L+  A+  L+  ++ ++D++G +L    
Sbjct: 174 KASVRITPRPGSDIITNR------KKVEGLVKLIQYAIEGLESDNIAIVDNSGTILNDFS 227

Query: 218 TANEMER-NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272
             + ++R ++  K   +    +  +   I+ AL+  L +D F  A V  + +DT +
Sbjct: 228 NLDGIDRIDLAEKERKLKLKYEAMLRGEIDSALSKVLSIDRFMIARV-NVKLDTSK 282


>gi|330982829|gb|EGH80932.1| flagellar MS-ring protein [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 317

 Score = 45.1 bits (105), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 107/256 (41%), Gaps = 64/256 (25%)

Query: 313 PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN-------- 364
           P+ +D++V            +   N+E++     T     +L RLS+AVVV+        
Sbjct: 102 PYPADKRV------------QSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAA 149

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF-------LENQ 417
            G ++     +AD       LA   ++V  A G ++ RGD++++ ++ F       L   
Sbjct: 150 NGEVSRAPWSAAD-------LARFTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEA 202

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR-LHNIDDAKKGEV-- 474
            F S   Q  F DI+ +            VG + +  L    LR  L+NI + K+ E+  
Sbjct: 203 SFYS---QPWFWDIVKQA-----------VGVIFILILVFGVLRPVLNNITNGKRKELAG 248

Query: 475 -GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
            GG + L           G + ND ++L    Q I      L S    Y ++ + ++   
Sbjct: 249 FGGDAELG----GMGGLDGELSNDRVSL-GGPQSIL-----LPSPTEGYDAQLNAIK--S 296

Query: 534 MIEINEERFAKILRKW 549
           ++  +  R A+++++W
Sbjct: 297 LVAEDPGRVAQVVKEW 312


>gi|219685754|ref|ZP_03540565.1| flagellar M-ring protein FliF [Borrelia garinii Far04]
 gi|219672693|gb|EED29721.1| flagellar M-ring protein FliF [Borrelia garinii Far04]
          Length = 569

 Score = 45.1 bits (105), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 50/236 (21%), Positives = 107/236 (45%), Gaps = 27/236 (11%)

Query: 55  LEVSD---VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGY 111
           +E+ D   ++RIS  L   N+ + +S +G        +  K R  L  + L     +  +
Sbjct: 56  VEIKDQYLLDRISQRLDRENVKYFLSSDGRIYLDDEKLAKKMRAILVREELVPVHMDP-W 114

Query: 112 ELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR------ 165
            LFD ++ + +T F + I   R++   + + I ++  + A  V++VMP+   F+      
Sbjct: 115 ALFD-IDRWTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKEAQEPV 173

Query: 166 ----KIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---- 217
               +I  RP + ++         K  E +  L+  A+  L+  ++ ++D++G +L    
Sbjct: 174 KASVRITPRPGSDIITNR------KKVEGLVKLIQYAIEGLESDNIAIVDNSGTILNDFS 227

Query: 218 TANEMER-NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272
             + ++R ++  K   +    +  +   I+ AL+  L +D F  A V  + +DT +
Sbjct: 228 NLDGIDRIDLAEKERKLKLKYEAMLRGEIDSALSKVLSIDRFMIARV-NVKLDTSK 282


>gi|219684584|ref|ZP_03539527.1| flagellar M-ring protein FliF [Borrelia garinii PBr]
 gi|219671946|gb|EED29000.1| flagellar M-ring protein FliF [Borrelia garinii PBr]
          Length = 569

 Score = 45.1 bits (105), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 50/236 (21%), Positives = 107/236 (45%), Gaps = 27/236 (11%)

Query: 55  LEVSD---VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGY 111
           +E+ D   ++RIS  L   N+ + +S +G        +  K R  L  + L     +  +
Sbjct: 56  VEIKDQYLLDRISQRLDRENVKYFLSSDGRIYLDDEKLAKKMRAILVREELVPVHMDP-W 114

Query: 112 ELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR------ 165
            LFD ++ + +T F + I   R++   + + I ++  + A  V++VMP+   F+      
Sbjct: 115 ALFD-IDRWTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKEAQEPV 173

Query: 166 ----KIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---- 217
               +I  RP + ++         K  E +  L+  A+  L+  ++ ++D++G +L    
Sbjct: 174 KASVRITPRPGSDIITNR------KKVEGLVKLIQYAIEGLESDNIAIVDNSGTILNDFS 227

Query: 218 TANEMER-NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272
             + ++R ++  K   +    +  +   I+ AL+  L +D F  A V  + +DT +
Sbjct: 228 NLDGIDRIDLAEKERKLKLKYEAMLRGEIDSALSKVLSIDRFMIARV-NVKLDTSK 282


>gi|310823558|ref|YP_003955916.1| type III secretion lipoprotein, yscj/flif family [Stigmatella
           aurantiaca DW4/3-1]
 gi|309396630|gb|ADO74089.1| Type III secretion lipoprotein, YscJ/FliF family [Stigmatella
           aurantiaca DW4/3-1]
          Length = 267

 Score = 45.1 bits (105), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 76/164 (46%), Gaps = 9/164 (5%)

Query: 55  LEVSDVNRISVALSEANIDFR-ISDNGS----SISVPSSMVGKARIHLAAQGLPSSSSNS 109
           L+    N +   L E  ++ R + + G     SI V  +    A   LA  GLP   + +
Sbjct: 28  LDERQANELQTVLLERGLEARKVPEAGKKPSWSIEVDEAQASAAVRILAELGLPRPVAET 87

Query: 110 GYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA 169
           G ++F    +   T   +++ R R LE  I +T+Q + G++ ARVH+++P         +
Sbjct: 88  GCDVFGG-GALLRTPIEEQLCRTRVLERGIEKTLQGMEGVLVARVHLMVPPPARPGHAPS 146

Query: 170 RPTASVMIRAINPS---VYKSAEAIRHLVAAAVPNLDMGDVTVL 210
              AS ++R  +     + +S + ++ L+A  V  L    V++L
Sbjct: 147 AAKASALLRTASGQADRLRQSQDRLQALIAGGVEGLSPEAVSLL 190


>gi|227328506|ref|ZP_03832530.1| type III secretion protein [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 255

 Score = 45.1 bits (105), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 72/136 (52%), Gaps = 8/136 (5%)

Query: 75  RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR-VR 133
           R+   G ++ + +  + +A   L A GLP  S  +  E+F K  S  +++ ++E  R + 
Sbjct: 50  RVDKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK--SGVISTPLEERARYIY 107

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEA 190
           AL  E+  T+  I G++ ARVH+V+P+  +  +     +A+V I+    + P   +  + 
Sbjct: 108 ALSQEVEATLAQIDGVLVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGME--QR 165

Query: 191 IRHLVAAAVPNLDMGD 206
           IR +VA+++P L   D
Sbjct: 166 IRRMVASSIPGLSGKD 181


>gi|225552378|ref|ZP_03773318.1| flagellar M-ring protein FliF [Borrelia sp. SV1]
 gi|225371376|gb|EEH00806.1| flagellar M-ring protein FliF [Borrelia sp. SV1]
          Length = 569

 Score = 44.7 bits (104), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 51/236 (21%), Positives = 106/236 (44%), Gaps = 27/236 (11%)

Query: 55  LEVSD---VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGY 111
           +E+ D   ++RIS  L   N+ + +S +G        +  K R  L  + L     +  +
Sbjct: 56  VEIKDQYLLDRISQRLDRENVKYFLSSDGRIYLDDEKLAKKMRAILVREELVPVHMDP-W 114

Query: 112 ELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR------ 165
            LFD ++ + +T F + I   R++   + + I ++  + A  V++VMP+   F+      
Sbjct: 115 ALFD-IDRWTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKESQEPV 173

Query: 166 ----KIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---- 217
               +I  RP + ++         K  E +  L+  A+  L+  ++ ++D+ G +L    
Sbjct: 174 KASVRITPRPGSDIITNR------KKVEGLVKLIQYAIEGLESDNIAIVDNRGTILNDFS 227

Query: 218 TANEMER-NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272
             + ++R ++  K   +    +  +   I+ AL+  L VD F  A V  + +DT +
Sbjct: 228 NLDGIDRIDLAEKERKLKLKYEAMLRGEIDSALSKVLSVDRFMIARV-NVKLDTSK 282


>gi|227114184|ref|ZP_03827840.1| type III secretion protein [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 255

 Score = 44.7 bits (104), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 72/136 (52%), Gaps = 8/136 (5%)

Query: 75  RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR-VR 133
           R+   G ++ + +  + +A   L A GLP  S  +  E+F K  S  +++ ++E  R + 
Sbjct: 50  RVDKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK--SGVISTPLEERARYIY 107

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEA 190
           AL  E+  T+  I G++ ARVH+V+P+  +  +     +A+V I+    + P   +  + 
Sbjct: 108 ALSQEVEATLAQIDGVLVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGME--QR 165

Query: 191 IRHLVAAAVPNLDMGD 206
           IR +VA+++P L   D
Sbjct: 166 IRRMVASSIPGLSGKD 181


>gi|160880849|ref|YP_001559817.1| flagellar M-ring protein FliF [Clostridium phytofermentans ISDg]
 gi|160429515|gb|ABX43078.1| flagellar M-ring protein FliF [Clostridium phytofermentans ISDg]
          Length = 531

 Score = 44.7 bits (104), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 103/233 (44%), Gaps = 12/233 (5%)

Query: 52  YVKL-EVSDVNRISVA---LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           YV+L ++ D    S A   L E  I +++ D+G ++ V +S   +A++ +A   + S + 
Sbjct: 50  YVELIKLEDTKTASQAIDILKENGIAYQLKDDGVTVLVDNSKKTEAKLLIADSEIASKAK 109

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
            S  +L +  N    T++ ++       +G++   ++   GI  AR+  +  D  S    
Sbjct: 110 LSLEQLLN--NDMSTTNYDKQTKLHLYYQGDLEELLKKQEGIDDARISYLPSDKRSSILE 167

Query: 168 GARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMER 224
             +  +  +   IN    KS AEAI   VA ++ N     V V+D  G LL     + E 
Sbjct: 168 QEKEISCSIFLTINSKFKKSSAEAIAITVANSLGNETTNKVKVIDQYGNLLYNGPEDEES 227

Query: 225 NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD--TQQIRE 275
               K+L   QA+  +    + +      G D    +   ++N D  T++IRE
Sbjct: 228 EYTNKNLEFRQAVLGDYTERVVR-FGLMNGFDYVEPSFALDINFDKTTEEIRE 279


>gi|166154774|ref|YP_001654892.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis 434/Bu]
 gi|301336048|ref|ZP_07224292.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis L2tet1]
 gi|165930762|emb|CAP04259.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis 434/Bu]
          Length = 325

 Score = 44.7 bits (104), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 92/197 (46%), Gaps = 30/197 (15%)

Query: 34  MLFMAARFFVNSPHYDNLYVK-LEVSDVNRISVALSEANIDFR-----ISDNGSS----- 82
           + F+ A FF ++    ++    L   D N I V L    +  +      S  G S     
Sbjct: 10  LFFILALFFCSACDSRSMITHGLSGRDANEIVVLLVSKGVAAQKVPQAASSTGGSGEQLW 69

Query: 83  -ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT-SFMQEITRVRALEG--- 137
            ISVP++ + +A   L   GLP     S  +LF K    GL  S MQE  ++R  EG   
Sbjct: 70  DISVPAAQITEALAILNQAGLPRMKGTSLLDLFSKQ---GLVPSEMQE--KIRYQEGLSE 124

Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI--RAI--NPSVYKSAEAIRH 193
           ++A TI+ + GIV A V I        R +    TASV I  R +  NP+    ++ I+ 
Sbjct: 125 QMATTIRKMDGIVDASVQISFSPEEDQRPL----TASVYIKHRGVLDNPNSIMVSK-IKR 179

Query: 194 LVAAAVPNLDMGDVTVL 210
           LVA+AVP L   +V+V+
Sbjct: 180 LVASAVPGLYPENVSVV 196


>gi|167030900|gb|ABZ05768.1| HrcJ [Pectobacterium carotovorum subsp. carotovorum]
          Length = 212

 Score = 44.7 bits (104), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 72/136 (52%), Gaps = 8/136 (5%)

Query: 75  RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR-VR 133
           R+   G ++ + +  + +A   L A GLP  S  +  E+F K  S  +++ ++E  R + 
Sbjct: 50  RMDKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK--SGVISTPLEERARYIY 107

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEA 190
           AL  E+  T+  I G++ ARVH+V+P+  +  +     +A+V I+    + P   +  + 
Sbjct: 108 ALSQEVEATLAQIDGVLVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGME--QR 165

Query: 191 IRHLVAAAVPNLDMGD 206
           IR +VA+++P L   D
Sbjct: 166 IRRMVASSIPGLSGKD 181


>gi|330940716|gb|EGH43724.1| flagellar MS-ring protein [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 251

 Score = 44.3 bits (103), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 60/271 (22%), Positives = 110/271 (40%), Gaps = 73/271 (26%)

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
           T QP  A       P+ +D++V            +   N+E++     T     +L RLS
Sbjct: 29  TGQPALA-------PYPADKRV------------QSTKNFELDRSISHTKQQQGRLTRLS 69

Query: 359 IAVVVN--------KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
           +AVVV+         G ++     +AD       LA   ++V  A G ++ RGD++++ +
Sbjct: 70  VAVVVDDMVKTNAANGEVSRAPWSAAD-------LARFTRLVQDAVGFDASRGDSVSVIN 122

Query: 411 MDF-------LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR- 462
           + F       L    F S   Q  F DI+ +            VG + +  L    LR  
Sbjct: 123 VPFSSERAEVLPEASFYS---QPWFWDIVKQA-----------VGVIFILILVFGVLRPV 168

Query: 463 LHNIDDAKKGEV---GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF-SHSRNLQSR 518
           L+NI + K+ E+   GG + L           G + ND ++L      +  S +    ++
Sbjct: 169 LNNITNGKRKELAGFGGDAELG----GMGGLDGELSNDRVSLGGPQSILLPSPTEGYDAQ 224

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKW 549
           +N+  S         ++  +  R A+++++W
Sbjct: 225 LNAIKS---------LVAEDPGRVAQVVKEW 246


>gi|166155649|ref|YP_001653904.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis L2b/UCH-1/proctitis]
 gi|165931637|emb|CAP07213.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis L2b/UCH-1/proctitis]
          Length = 325

 Score = 44.3 bits (103), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 92/197 (46%), Gaps = 30/197 (15%)

Query: 34  MLFMAARFFVNSPHYDNLYVK-LEVSDVNRISVALSEANIDFR-----ISDNGSS----- 82
           + F+ A FF ++    ++    L   D N I V L    +  +      S  G S     
Sbjct: 10  LFFILALFFCSACDSRSMITHGLSGRDANEIVVLLVSKGVAAQKVPQAASSTGGSGEQLW 69

Query: 83  -ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT-SFMQEITRVRALEG--- 137
            ISVP++ + +A   L   GLP     S  +LF K    GL  S MQE  ++R  EG   
Sbjct: 70  DISVPAAQITEALAILNQAGLPRMKGTSLLDLFSKQ---GLVPSEMQE--KIRYQEGLSE 124

Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI--RAI--NPSVYKSAEAIRH 193
           ++A TI+ + GIV A V I        R +    TASV I  R +  NP+    ++ I+ 
Sbjct: 125 QMATTIRKMDGIVDASVQISFSPEEDQRPL----TASVYIKHRGVLDNPNSIMVSK-IKR 179

Query: 194 LVAAAVPNLDMGDVTVL 210
           LVA+AVP L   +V+V+
Sbjct: 180 LVASAVPGLYPENVSVV 196


>gi|218133660|ref|ZP_03462464.1| hypothetical protein BACPEC_01529 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991035|gb|EEC57041.1| hypothetical protein BACPEC_01529 [Bacteroides pectinophilus ATCC
           43243]
          Length = 542

 Score = 44.3 bits (103), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 46/233 (19%), Positives = 103/233 (44%), Gaps = 10/233 (4%)

Query: 43  VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL 102
           VN P Y+ L      + +  ++  L++ +I + ++DN   + V    +  A++ LA+  +
Sbjct: 44  VNRPQYETLTTCSSYAQMQEVTNLLTDNSISYNVADNSMVVKVRKEDLTNAKMALASSNI 103

Query: 103 PSSSSNSGYELFDKVN-SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
            S     GY + D ++ SF  T   ++    + LE +    ++S  G+  A V + + + 
Sbjct: 104 QS----DGYTIEDALSGSFSTTENDKQKKWQKYLESKFKTDLESFDGVKEASVTVTLGEA 159

Query: 162 GS-FRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTG-KLLTA 219
            + +       T  V+++       + A  +  L+A +V N    ++T++ + G  L + 
Sbjct: 160 TNIYYSTKQEATVGVVLQLTKQIDDEVAAGMAQLLATSVGNKTTDNITIISTDGTTLFSK 219

Query: 220 NEMERNILGKS---LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
           ++ + ++ G S   L+     Q +IE +I   L   +           ++N+D
Sbjct: 220 SDTDLSVSGTSTVGLNGRLKYQSQIESSITSHLRQGMLATGLYDEAYVQMNLD 272


>gi|325273533|ref|ZP_08139766.1| flagellar MS-ring protein [Pseudomonas sp. TJI-51]
 gi|324101334|gb|EGB98947.1| flagellar MS-ring protein [Pseudomonas sp. TJI-51]
          Length = 154

 Score = 44.3 bits (103), Expect = 0.051,   Method: Composition-based stats.
 Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 1/101 (0%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92
           + +  A   +   P Y  LY  L   D  ++   L+ A+I + +  N  ++ V S  + +
Sbjct: 50  VAIGFAVVLWSQQPDYRPLYGSLSGMDTKQVMDTLAAADIPYNVEPNSGALLVKSDDLAR 109

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
           AR+ LAA G+  S  N G+EL DK    G + FM E TR R
Sbjct: 110 ARLKLAAAGVAPSDGNVGFELLDKEQGLGTSQFM-EATRYR 149


>gi|253688582|ref|YP_003017772.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251755160|gb|ACT13236.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 255

 Score = 44.3 bits (103), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 71/136 (52%), Gaps = 8/136 (5%)

Query: 75  RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR-VR 133
           R+   G ++ + +  + +A   L A GLP  S  +  E+F K  S  +++ ++E  R + 
Sbjct: 50  RVDKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK--SGVISTPLEERARYIY 107

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEA 190
           AL  E+  T+  I G++ ARVH+V+P+  +  +     +A+V I+    + P   +    
Sbjct: 108 ALSQEVEATLAQIDGVLVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGMEP--R 165

Query: 191 IRHLVAAAVPNLDMGD 206
           IR +VA+++P L   D
Sbjct: 166 IRRMVASSIPGLSGKD 181


>gi|194350681|gb|ACF53771.1| HrcJ [Erwinia amylovora]
          Length = 120

 Score = 44.3 bits (103), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 6/109 (5%)

Query: 97  LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHI 156
           L A GLP  +  +  E+F K N    T   +    + AL  E+  T+  I G++ ARVH+
Sbjct: 15  LDAAGLPRPARTNLGEVFQK-NGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHV 73

Query: 157 VMPDMGSFRKIGARPTASVMIRA---INPSVYKSAEAIRHLVAAAVPNL 202
           V+P+  +  +     +A+V I+    ++P V +    IR +VA+++P L
Sbjct: 74  VLPERIAPGEPVQPASAAVFIKYRPDLDPDVIEP--RIRRMVASSLPGL 120


>gi|224534391|ref|ZP_03674969.1| flagellar M-ring protein FliF [Borrelia spielmanii A14S]
 gi|224514493|gb|EEF84809.1| flagellar M-ring protein FliF [Borrelia spielmanii A14S]
          Length = 569

 Score = 44.3 bits (103), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 51/238 (21%), Positives = 108/238 (45%), Gaps = 31/238 (13%)

Query: 55  LEVSD---VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGY 111
           +E+ D   ++RIS  L   N+ + +S +G        +  K R  L  + L     +  +
Sbjct: 56  VEIKDQYLLDRISQRLDRENVKYILSSDGRIYLDDEKLAKKMRAILVREELVPVHMDP-W 114

Query: 112 ELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR------ 165
            LFD ++ + +T F + I   R++   + + I ++  + A  V++VMP+   F+      
Sbjct: 115 ALFD-IDRWTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKESQEPV 173

Query: 166 ----KIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---- 217
               +I  RP + ++         K  E +  L+  A+  L+  ++ ++D++G +L    
Sbjct: 174 KASVRITPRPGSDIITNR------KKIEGLVKLIQYAIEGLESDNIAIVDNSGTILNDFS 227

Query: 218 TANEMER-NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELN--MDTQQ 272
             + ++R ++  K   +    +  +   I+ AL   L VD F   ++A +N  +DT +
Sbjct: 228 NLDGIDRIDLAEKERKLKLKYEAMLRGEIDSALGKVLSVDRF---MIARINVKLDTSK 282


>gi|307131216|ref|YP_003883232.1| type III secretion bridge between inner and outermembrane
           lipoprotein (YscJ,HrcJ,EscJ, PscJ) [Dickeya dadantii
           3937]
 gi|306528745|gb|ADM98675.1| Type III secretion bridge between inner and outermembrane
           lipoprotein (YscJ,HrcJ,EscJ, PscJ) [Dickeya dadantii
           3937]
          Length = 236

 Score = 43.9 bits (102), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 79/158 (50%), Gaps = 8/158 (5%)

Query: 50  NLYVKLEVSDVNRISVALSEANI--DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
            L+  L  +D N +  AL   +I  + R    G SI +    + +A   L A GLP  + 
Sbjct: 2   ELHRGLSENDANEVIAALGGYHIGAEKRTEKTGVSILIDVKDMERAVNILNAAGLPRQAR 61

Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            +  ++F K     +++ ++E  R + AL  E+  T+  I G++ ARVH+V+P+  +  +
Sbjct: 62  TNLGQVFQKTGV--ISTPLEERARYIYALSQEVESTLTQIDGVLVARVHVVLPERIAPGE 119

Query: 167 IGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNL 202
                +A+V I+   P +   +    IR +VA+++P L
Sbjct: 120 PIQPASAAVFIK-YRPELEPDSIEPRIRRMVASSIPGL 156


>gi|194350711|gb|ACF53786.1| HrcJ [Pectobacterium carotovorum subsp. brasiliensis]
          Length = 128

 Score = 43.9 bits (102), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 71/132 (53%), Gaps = 8/132 (6%)

Query: 75  RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR-VR 133
           R+   G ++ + +  + +A   L A GLP  S  +  E+F K  S  +++ ++E  R + 
Sbjct: 1   RVEKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK--SGVISTPLEERARYIY 58

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEA 190
           AL  E+  T+  I G++ ARVH+V+P+  +  +     +A+V I+    + P   +  + 
Sbjct: 59  ALSQEVEATLAQIDGVLVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGME--QR 116

Query: 191 IRHLVAAAVPNL 202
           IR +VA+++P L
Sbjct: 117 IRRMVASSIPGL 128


>gi|149178729|ref|ZP_01857312.1| probable polar flagellar M-ring protein FliF [Planctomyces maris
           DSM 8797]
 gi|148842427|gb|EDL56807.1| probable polar flagellar M-ring protein FliF [Planctomyces maris
           DSM 8797]
          Length = 538

 Score = 43.9 bits (102), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 104/248 (41%), Gaps = 30/248 (12%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD--- 59
           I  Q    F+  T  G  R ++L+  +L  +ML     FF +S    + YV L +     
Sbjct: 7   IYQQFSNLFQ--TMSGSQRAILLSVPLL--MMLAFGFLFFRDS---QSSYVSLSLGKDFT 59

Query: 60  ----VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL-AAQGLPSSSSNSGYELF 114
               ++   V L     DF  S  G  I VP + V +    L    GLP+  ++   E F
Sbjct: 60  TEEVIHAEEVLLRAGLTDF--SRKGQRIMVPQNEVPRYNAALIEGGGLPTDWASEWQEQF 117

Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARP--T 172
           +K + F     +Q + R  AL  ++ R I++I  I  A V          R     P  T
Sbjct: 118 EKSSMFVSKDQLQ-VMRDIALGNQLRRMIRAIPAIEDASVMWAR-SKKRLRWNNTTPEVT 175

Query: 173 ASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLD-STGKLLTANEMERNI 226
           A+VM+     R + P +  S   +R  V+  VP+L    VTV D STG   TA++     
Sbjct: 176 ATVMVKPRPGRELTPVLVTS---LRAAVSTMVPDLTTDSVTVFDQSTGTSFTADDKNEAF 232

Query: 227 LGKSLSIV 234
             K +S V
Sbjct: 233 DSKFISWV 240


>gi|91782699|ref|YP_557905.1| secretory protein YscJ/FliF [Burkholderia xenovorans LB400]
 gi|91686653|gb|ABE29853.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia xenovorans LB400]
          Length = 281

 Score = 43.9 bits (102), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 28/169 (16%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDF---RISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
           +L+  L+    NRI  ALS   I+    R  D   +I+V  +    A    +A  LP   
Sbjct: 20  SLFEGLDEDQANRIVAALSHHGINGYKERNPDRTWNITVDDADAVVATELASAYALPRGG 79

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPD--- 160
             +  +LF +    GL S  +E  RVR + G   E++ T++ + G++ ARVHIV+P+   
Sbjct: 80  HANLGDLFSRQ---GLISSPEE-DRVRYVYGLSQELSETLEKMDGVLLARVHIVLPEKDP 135

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS-------AEAIRHLVAAAVPNL 202
           M S +     P+ASVM+R      Y+S        + IR LVA  V  L
Sbjct: 136 MDSTQDT--LPSASVMMR------YRSDYNLEPMRDRIRALVAGGVEGL 176


>gi|194350707|gb|ACF53784.1| HrcJ [Pectobacterium carotovorum subsp. carotovorum]
          Length = 146

 Score = 43.9 bits (102), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 71/132 (53%), Gaps = 8/132 (6%)

Query: 75  RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR-VR 133
           R+   G ++ + +  + +A   L A GLP  S  +  E+F K  S  +++ ++E  R + 
Sbjct: 19  RVDKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK--SGVISTPLEERARYIY 76

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEA 190
           AL  E+  T+  I G++ ARVH+V+P+  +  +     +A+V I+    + P   +  + 
Sbjct: 77  ALSQEVEATLAQIDGVLVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGME--QR 134

Query: 191 IRHLVAAAVPNL 202
           IR +VA+++P L
Sbjct: 135 IRRMVASSIPGL 146


>gi|34500890|gb|AAQ73918.1| HrcJ [Pectobacterium carotovorum subsp. carotovorum]
          Length = 255

 Score = 43.9 bits (102), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 72/136 (52%), Gaps = 8/136 (5%)

Query: 75  RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR-VR 133
           R+   G ++ + +  + +A   L A GLP  S  +  E+F K  S  +++ ++E  R + 
Sbjct: 50  RMDKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK--SGVISTPLKERARYIY 107

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEA 190
           AL  E+  T+  I G++ ARVH+V+P+  +  +     +A+V I+    + P   +  + 
Sbjct: 108 ALSQEVEATLAQIDGVLVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGME--QR 165

Query: 191 IRHLVAAAVPNLDMGD 206
           IR +VA+++P L   D
Sbjct: 166 IRRMVASSIPGLSGKD 181


>gi|296162486|ref|ZP_06845277.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia sp. Ch1-1]
 gi|295887299|gb|EFG67126.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia sp. Ch1-1]
          Length = 281

 Score = 43.9 bits (102), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 77/167 (46%), Gaps = 24/167 (14%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDF---RISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
           +L+  L+    NRI  ALS   I+    R  D   +I+V       A    +A  LP   
Sbjct: 20  SLFEGLDEDQANRIVAALSHHGINGYKERNPDRTWNITVDDEDAVIATELASAYALPRGG 79

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMGS 163
             +  +LF +    GL S  +E  RVR + G   E++ T++ + G++ ARVHIV+P+   
Sbjct: 80  HANLGDLFSRQ---GLISSPEE-DRVRYVYGLSQELSETLEKMDGVLLARVHIVLPEKDP 135

Query: 164 FRKI-GARPTASVMIRAINPSVYKS-------AEAIRHLVAAAVPNL 202
                   P+ASVM+R      Y+S        + IR LVA  V  L
Sbjct: 136 MDPAQDTLPSASVMMR------YRSDYNLEPMRDRIRALVAGGVEGL 176


>gi|160875378|ref|YP_001554694.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Shewanella baltica OS195]
 gi|160860900|gb|ABX49434.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Shewanella baltica OS195]
 gi|315267578|gb|ADT94431.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Shewanella baltica OS678]
          Length = 239

 Score = 43.9 bits (102), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 2/91 (2%)

Query: 122 LTSFMQEITRVRAL-EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-A 179
           +TS  QE  ++  L E ++ RT+ S+ G+++ARV I  P   S R+I    +ASV I+ +
Sbjct: 95  VTSPAQEEAKMGYLKEQQLERTLSSMDGVISARVSIAEPAPDSGRQIALTKSASVYIKYS 154

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
              ++  +   I+ LV  AVP L   +++V 
Sbjct: 155 PQANLTNTENQIKSLVQNAVPGLSYDNISVF 185


>gi|118592619|ref|ZP_01550009.1| Type III secretion component protein SctJ [Stappia aggregata IAM
           12614]
 gi|118434670|gb|EAV41321.1| Type III secretion component protein SctJ [Stappia aggregata IAM
           12614]
          Length = 239

 Score = 43.9 bits (102), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 68/135 (50%), Gaps = 2/135 (1%)

Query: 77  SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136
            D+G S+ V  + +  A   L+  G P +   S   +F K +    + F + +  + AL 
Sbjct: 26  GDDGVSLLVDEADLAPAIGILSENGFPRTERESIGSVFQK-SGIMSSPFEERVRYIHALG 84

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-AINPSVYKSAEAIRHLV 195
            E++ T+  I G++ ARVH+V+P+     ++    +A+V I+ + N  +      IR LV
Sbjct: 85  EEVSGTLNEIDGVLMARVHVVLPEKPELGEVIVPSSAAVFIKHSKNVDLDFITPQIRRLV 144

Query: 196 AAAVPNLDMGDVTVL 210
           + ++  ++   VTV+
Sbjct: 145 SNSIQGVEYDSVTVV 159


>gi|194350715|gb|ACF53788.1| HrcJ [Pectobacterium atrosepticum SCRI1043]
          Length = 133

 Score = 43.9 bits (102), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 71/132 (53%), Gaps = 8/132 (6%)

Query: 75  RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR-VR 133
           R+   G ++ + +  + +A   L A GLP  S  +  E+F K  S  +++ ++E  R + 
Sbjct: 6   RVDKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK--SGVISTPLEERARYIY 63

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEA 190
           AL  E+  T+  I G++ ARVH+V+P+  +  +     +A+V I+    + P   +  + 
Sbjct: 64  ALSQEVEATLAQIDGVLVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGME--QR 121

Query: 191 IRHLVAAAVPNL 202
           IR +VA+++P L
Sbjct: 122 IRRMVASSIPGL 133


>gi|325926453|ref|ZP_08187774.1| flagellar biosynthesis/type III secretory pathway lipoprotein
           [Xanthomonas perforans 91-118]
 gi|325543152|gb|EGD14594.1| flagellar biosynthesis/type III secretory pathway lipoprotein
           [Xanthomonas perforans 91-118]
          Length = 241

 Score = 43.9 bits (102), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 102/222 (45%), Gaps = 16/222 (7%)

Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT 396
           NYE++     T     +++R+S+AV+++        G+  +Q    + L  I  +V  A 
Sbjct: 30  NYELDRTLQHTRQPAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQAV 89

Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL- 455
           G ++ RGDT+++ +  F+   +  +G     + +        V N L  LVG ++V  L 
Sbjct: 90  GFDAARGDTVSVMNAPFVREAV--AGEEGPKWWE-----DPRVQNGLRLLVGAVVVLALL 142

Query: 456 -GL--HALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS 512
            G+    LR+L  +   K  +  GK+     P S+ V   ++  D+  +    +D     
Sbjct: 143 FGVVRPTLRQLTGVTAVKDKQ--GKAGKDGTPQSADVR--MVDEDDDLMPRLEEDTAQIG 198

Query: 513 RNLQSRINSYVSKQSDLRLL-HMIEINEERFAKILRKWARSE 553
           ++ ++ I    + +  +RL    ++ + +R A++++ W  SE
Sbjct: 199 QDKKTPIALPDAYEERMRLAREAVKADSKRVAQVVKGWVASE 240


>gi|194350709|gb|ACF53785.1| HrcJ [Pectobacterium carotovorum subsp. carotovorum]
          Length = 143

 Score = 43.5 bits (101), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 71/132 (53%), Gaps = 8/132 (6%)

Query: 75  RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR-VR 133
           R+   G ++ + +  + +A   L A GLP  S  +  E+F K  S  +++ ++E  R + 
Sbjct: 16  RVDKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK--SGVISTPLEERARYIY 73

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEA 190
           AL  E+  T+  I G++ ARVH+V+P+  +  +     +A+V I+    + P   +  + 
Sbjct: 74  ALSQEVEATLAQIDGVLVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGME--QR 131

Query: 191 IRHLVAAAVPNL 202
           IR +VA+++P L
Sbjct: 132 IRRMVASSIPGL 143


>gi|212702675|ref|ZP_03310803.1| hypothetical protein DESPIG_00703 [Desulfovibrio piger ATCC 29098]
 gi|212673947|gb|EEB34430.1| hypothetical protein DESPIG_00703 [Desulfovibrio piger ATCC 29098]
          Length = 260

 Score = 43.5 bits (101), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-AINPSVYKSAEAIR 192
           AL  E+A T+  I G++ ARVH+V+        I   P+A+V +R  ++  V      IR
Sbjct: 104 ALSQELADTLSRIDGVLTARVHVVLGVNDKVNNITIAPSAAVFLRHTLDSPVVNLVPEIR 163

Query: 193 HLVAAAVPNLDMGDVTVL 210
            LVA AV +L   +V+V+
Sbjct: 164 ELVAGAVASLKYDNVSVM 181


>gi|50121023|ref|YP_050190.1| type III secretion system protein [Pectobacterium atrosepticum
           SCRI1043]
 gi|42560409|gb|AAS20369.1| HrcJ [Pectobacterium atrosepticum]
 gi|49611549|emb|CAG74997.1| type III secretion protein [Pectobacterium atrosepticum SCRI1043]
          Length = 255

 Score = 43.5 bits (101), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 71/136 (52%), Gaps = 8/136 (5%)

Query: 75  RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR-VR 133
           R+   G ++ + +  + +A   L A GLP  S  +  E+F K  S  +++ ++E  R + 
Sbjct: 50  RVEKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK--SGVISTPLEERARYIY 107

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEA 190
           AL  E+  T+  I G++ ARVH+V+P+  +  +     +A+V I+    + P   +    
Sbjct: 108 ALSQEVEATLAQIDGVMVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGMEP--R 165

Query: 191 IRHLVAAAVPNLDMGD 206
           IR +VA+++P L   D
Sbjct: 166 IRRMVASSIPGLSGKD 181


>gi|194292006|ref|YP_002007913.1| sctj: non flagellar t3S system conserved transmembrane lipoprotein.
           yscj/flif family. [Cupriavidus taiwanensis LMG 19424]
 gi|193225910|emb|CAQ71857.1| SctJ: non flagellar T3S system conserved transmembrane lipoprotein.
           yscJ/FliF family [Cupriavidus taiwanensis LMG 19424]
          Length = 262

 Score = 43.5 bits (101), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 10/119 (8%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDF---RISDNGSS------ISVPSSMVGKARIHLAAQ 100
           +LY  L   + N++  AL+   ID    R   +G +      + V  S +  A   L ++
Sbjct: 29  DLYASLNEPEANQVLAALTAEGIDAEKARADTSGGTGEGQWRVRVEESQLPAALEILRSE 88

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
           GLP     S  ++F K      T   + +  + AL  E++ T+++I G+V ARVH+V+P
Sbjct: 89  GLPGERFASLGQVFQK-QGLVATPTEERMRYIFALSQELSETLRNIDGVVTARVHVVIP 146


>gi|251789507|ref|YP_003004228.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Dickeya
           zeae Ech1591]
 gi|247538128|gb|ACT06749.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Dickeya
           zeae Ech1591]
          Length = 261

 Score = 43.5 bits (101), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 79/158 (50%), Gaps = 8/158 (5%)

Query: 50  NLYVKLEVSDVNRISVALSEANI--DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
            L+  L  +D N +  AL   +I  + R    G SI +    + +A   L A GLP  + 
Sbjct: 27  ELHRGLSENDANEVIAALGGYHIGAEKRTDKAGVSILIDVKDMERAVNILNAAGLPRQAR 86

Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            +  ++F K     +++ ++E  R + AL  E+  T+  I G++ ARVH+V+P+  +  +
Sbjct: 87  TNLGQVFQKTGV--ISTPLEERARYIYALSQEVESTLTQIDGVLVARVHVVLPERIAPGE 144

Query: 167 IGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNL 202
                +A+V I+   P +   +    IR +VA+++P L
Sbjct: 145 PIQPASAAVFIK-YRPELEPDSIEPRIRRMVASSIPGL 181


>gi|296123331|ref|YP_003631109.1| secretory protein YscJ/FliF family protein [Planctomyces
           limnophilus DSM 3776]
 gi|296015671|gb|ADG68910.1| secretory protein YscJ/FliF family protein [Planctomyces
           limnophilus DSM 3776]
          Length = 532

 Score = 43.5 bits (101), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 116/248 (46%), Gaps = 34/248 (13%)

Query: 66  ALSEANI-DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
           AL EA + DF+    G  + VP++   K R + A     +   + G +L     S  L+ 
Sbjct: 52  ALMEAGLTDFQ--RQGRMLLVPAAE--KDRYNAALLEFDAMPEDLGSQLLKHYES--LSP 105

Query: 125 FMQEITRVRALEG----EIARTIQSISGIVAARVHIVMPDM-GSFRKIGARPTASVMI-- 177
           F+ E  R    E     E+A+T+++I  +  ARV I  P+   S+ + G   TA+V I  
Sbjct: 106 FITEKQRHEMREAMLLKEVAQTLKAIPNVEDARVVIANPNRRNSWSQKGTV-TANVTITP 164

Query: 178 ---RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL-SI 233
              R ++  +  S   IR  VA+ VP+L   DVTV D   ++  A +   + L   L   
Sbjct: 165 KKGRELSTRLVAS---IRAAVASMVPDLKTSDVTVFDPVNEVTYAGDAADDPLSSQLVQR 221

Query: 234 VQAIQHEIEMNINKALAAFLGV--------DNFRSAVVAELNMDTQQIREIVYDP----D 281
           ++ +  + E  I+K+L+   GV        +N +S+V+    +D ++   ++ +     D
Sbjct: 222 IRELTKQYESQISKSLSYIPGVNVTVHVDIENLKSSVIRTQQIDPKKSAPVISNEFTVND 281

Query: 282 SKVERSIR 289
           ++ +R+ R
Sbjct: 282 TQTQRAPR 289


>gi|21311402|gb|AAM46696.1|AF448202_7 HrcJ [Erwinia chrysanthemi]
          Length = 245

 Score = 43.1 bits (100), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 79/158 (50%), Gaps = 8/158 (5%)

Query: 50  NLYVKLEVSDVNRISVALSEANI--DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
            L+  L  +D N +  AL   +I  + R    G SI +    + +A   L A GLP  + 
Sbjct: 11  ELHRGLSENDANEVIAALGGYHIGAEKRTDKAGVSILIDVKDMERAVNILNAAGLPRQAR 70

Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            +  ++F K     +++ ++E  R + AL  E+  T+  I G++ ARVH+V+P+  +  +
Sbjct: 71  TNLGQVFQKTGV--ISTPLEERARYIYALSQEVESTLTQIDGVLVARVHVVLPERIAPGE 128

Query: 167 IGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNL 202
                +A+V I+   P +   +    IR +VA+++P L
Sbjct: 129 PIQPASAAVFIK-YRPELEPDSIEPRIRRMVASSIPGL 165


>gi|329901481|ref|ZP_08272819.1| Type III secretory pathway, lipoprotein EscJ [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327549089|gb|EGF33689.1| Type III secretory pathway, lipoprotein EscJ [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 245

 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 75/160 (46%), Gaps = 12/160 (7%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           NL   L+ +D N I   L    I+ +   +  G +++V  + V +A   + A GLP  S 
Sbjct: 3   NLQTNLQDADANEIVALLRHNGIEAKKVTAKEGITLTVHEADVPRATDIMRAAGLPKRSL 62

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
            +   +F K      T   + +  + AL  E+  T+Q    +V+ARVH+V+P+    R  
Sbjct: 63  ANLGTVFKKEGMIS-TPLEERVRYIHALSEELEFTLQQFDHVVSARVHVVLPE----RIA 117

Query: 168 GARP----TASVMIRAINP-SVYKSAEAIRHLVAAAVPNL 202
              P    +A+V ++   P     +   I +LVA+++P L
Sbjct: 118 PGEPIQPSSAAVFVKYTEPFDEDTNIPRITNLVASSIPGL 157


>gi|194350701|gb|ACF53781.1| HrcJ [Brenneria nigrifluens]
 gi|194350703|gb|ACF53782.1| HrcJ [Brenneria nigrifluens]
 gi|194350705|gb|ACF53783.1| HrcJ [Brenneria alni]
          Length = 146

 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 70/132 (53%), Gaps = 8/132 (6%)

Query: 75  RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR-VR 133
           R+   G ++ + +  + +A   L A GLP  S  +  E+F K  S  +++ ++E  R + 
Sbjct: 19  RVDKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK--SGVISTPLEERARYIY 76

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEA 190
           AL  E+  T+  I G++ ARVH+V+P+  +  +     +A+V I+    + P   +    
Sbjct: 77  ALSQEVEATLAQIDGVLVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGMEP--R 134

Query: 191 IRHLVAAAVPNL 202
           IR +VA+++P L
Sbjct: 135 IRRMVASSIPGL 146


>gi|119503664|ref|ZP_01625747.1| flagellar M-ring protein [marine gamma proteobacterium HTCC2080]
 gi|119460726|gb|EAW41818.1| flagellar M-ring protein [marine gamma proteobacterium HTCC2080]
          Length = 300

 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 87/183 (47%), Gaps = 27/183 (14%)

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD----------A 294
           I   L   LGV   R+ V A+L+    +     Y P++ + RS + ++D          A
Sbjct: 5   IESILEPILGVGAARAQVTADLDFTRVESTSEQYSPET-IMRSEQTTEDLTLKSIAAEGA 63

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD-NYK 353
               T QP  A   +     V+    P   S + T       N+E++ K+I+   +   K
Sbjct: 64  PGQLTEQPPGAADPDDAENAVAQAPSPTRESRKAT------RNFEMD-KTISHVREVPGK 116

Query: 354 LERLSIAVVVNKGRLTEVLG-RSA-DQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
           L RLSIAVV++   +T+  G R+A +QG++D    EI  +V  A G +  RGDT+++ + 
Sbjct: 117 LRRLSIAVVIDY--VTDEDGNRTALEQGRLD----EITALVREAVGFDDARGDTVSVINS 170

Query: 412 DFL 414
            F+
Sbjct: 171 PFV 173


>gi|194350717|gb|ACF53789.1| HrcJ [Pectobacterium carotovorum subsp. odoriferum]
          Length = 146

 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 70/132 (53%), Gaps = 8/132 (6%)

Query: 75  RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR-VR 133
           R+   G ++ + +  + +A   L A GLP  S  +  E+F K  S  +++ ++E  R + 
Sbjct: 19  RVEKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK--SGVISTPLEERARYIY 76

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEA 190
           AL  E+  T+  I G++ ARVH+V+P+  +  +     +A+V I+    + P   +    
Sbjct: 77  ALSQEVEATLAQIDGVMVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGMEP--R 134

Query: 191 IRHLVAAAVPNL 202
           IR +VA+++P L
Sbjct: 135 IRRMVASSIPGL 146


>gi|289670545|ref|ZP_06491620.1| flagellar MS-ring protein [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 230

 Score = 42.7 bits (99), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 46/222 (20%), Positives = 102/222 (45%), Gaps = 16/222 (7%)

Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT 396
           NYE++     T     +++R+S+AV+++        G+  +Q    + L  I  +V  A 
Sbjct: 19  NYELDRTLQHTRQPAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQAV 78

Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL- 455
           G ++ RGDT+++ +  F+   +  +G     + +        V N L  LVG ++V  L 
Sbjct: 79  GFDAARGDTVSVMNAPFVREAV--AGEEGPKWWE-----DPRVQNGLRLLVGAVVVLALL 131

Query: 456 -GL--HALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS 512
            G+    LR+L  +   K+ +  G +  +P     +    ++ +++  L    +D  S  
Sbjct: 132 FGVVRPTLRQLTGVTAIKEKQRKGGNDGTP----QSADVRMVDDEDSLLPHMGEDTASIG 187

Query: 513 RNLQSRINSYVSKQSDLRLL-HMIEINEERFAKILRKWARSE 553
           ++ +  I    + +  +R+    ++ + +R A++++ W  SE
Sbjct: 188 QDRKPAIALPDAYEERMRVAREAVKADSKRVAQVVKGWVASE 229


>gi|323388146|gb|ADX60342.1| inner/outer membrane type III secretion protein RscJ [Pseudomonas
           fluorescens]
          Length = 268

 Score = 42.7 bits (99), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 89/173 (51%), Gaps = 14/173 (8%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
            L+ +L   + N +   L++  I  +   + +G  + V +S + +A   L A GLP  + 
Sbjct: 25  ELHSRLSEQEANEVVAELADKQIRAQKVPAKDGVVVRVNASDISRAVRTLEAAGLPKLAR 84

Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
           ++  ++F K     +++ ++E  R + AL  E+  T+ +I G++ ARVH+V+P+  +  +
Sbjct: 85  STLGDIFRKEGV--ISTPLEERARYIYALSQELEATLSNIDGVIVARVHVVLPERIAPGE 142

Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
                +ASV I+    + P   +    +R +VA+++P    G    +++T KL
Sbjct: 143 PVQPASASVFIKHDPRLEPDNIRP--RVRRMVASSIP----GMAAAVENTQKL 189


>gi|229826302|ref|ZP_04452371.1| hypothetical protein GCWU000182_01674 [Abiotrophia defectiva ATCC
           49176]
 gi|229789172|gb|EEP25286.1| hypothetical protein GCWU000182_01674 [Abiotrophia defectiva ATCC
           49176]
          Length = 536

 Score = 42.7 bits (99), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 65/302 (21%), Positives = 130/302 (43%), Gaps = 19/302 (6%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           + L+F+   + + R  ++ +   + + I+L     +FV  P    L    + S+  +I  
Sbjct: 14  RFLEFWNKYSPVQRILMIAVGVGVFLAIIL---VSYFVTRPVMTTLVKAEKTSETAKIKD 70

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L +  I + +S +  +ISV       A + LA   +PS    S  ELF+  N F  T  
Sbjct: 71  LLDDNGISYELSSDALTISVDQKDYSNALLVLAKNDIPSIGM-SIDELFN--NGFSTTES 127

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTA-SVMIRAINPSV 184
            +++      +  + + + ++  I  A V I  P  G+      + T+ SV++   +   
Sbjct: 128 EKKLKANIYKQDWLRQVLLNMDNIENAVVSITSPTTGNTLFAETKDTSVSVILTVSSDFK 187

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEI--- 241
            ++A+ I +++A AV N     +T+ D +G LL  N  + ++    ++ +   +  +   
Sbjct: 188 QENAKTIANILAGAVGNDSTKAITIADQSGNLL-FNGADNDVFSGGINSISDYEKNVTGV 246

Query: 242 -EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV--YDPDSKVERSIR---LSKDAQ 295
            +  I K L      D+ +  V A    D  +I  +   Y P +  E+ ++    S +AQ
Sbjct: 247 KKEEIYKLLVGLPAYDDAK--VAANFIFDMNKISSVYTEYTPPTGAEQGLKSHDYSYEAQ 304

Query: 296 RS 297
            S
Sbjct: 305 NS 306


>gi|695778|emb|CAA55109.1| lcrKa [Yersinia pestis]
          Length = 236

 Score = 42.7 bits (99), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 4/103 (3%)

Query: 78  DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR-ALE 136
           D    + V  S V +A   L  +G P  S ++  ++F K     ++S ++E+ R+  A  
Sbjct: 45  DGKIKLLVEESDVAQAIDILKRKGYPHESFSTLQDVFPKDGL--ISSPIEELARLNYAKA 102

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIR 178
            EI+RT+  I G++ ARVH+V+P+  + + K G   +ASV I+
Sbjct: 103 QEISRTLSEIDGVLVARVHVVLPEEQNNKGKKGVAASASVFIK 145


>gi|300310135|ref|YP_003774227.1| type III secretion HrcJ lipoprotein [Herbaspirillum seropedicae
           SmR1]
 gi|300072920|gb|ADJ62319.1| type III secretion HrcJ lipoprotein [Herbaspirillum seropedicae
           SmR1]
          Length = 292

 Score = 42.7 bits (99), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 94/190 (49%), Gaps = 19/190 (10%)

Query: 51  LYVKLEVSDVNRISVALSEANI--DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108
           L   L  +D N I + L+   I  D +   +G ++ V    + +A   + A GLP  S +
Sbjct: 29  LQAALNDADANEIILVLNRKGIEVDKQKGKDGVTLLVKDVELSRATETMNAAGLPRRSLS 88

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPD-MGSF 164
           +  E+F K     ++S M+E  R+R + G   E+  T+     +V+ARVH+V+P+ +   
Sbjct: 89  NLGEVFKKQGM--ISSPMEE--RIRYIHGLSEELESTMLQFDHVVSARVHVVLPERIAPG 144

Query: 165 RKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGD----VTVLDSTGKLLT 218
             I  +P+++ +     P + + A    IR LVA+++P L   D    V+V+   G+  T
Sbjct: 145 EPI--QPSSAAVFVKYRPPLDEDAVMPRIRRLVASSIPGLASEDGRSKVSVVMMPGEPPT 202

Query: 219 ANEMERNILG 228
              +E  +LG
Sbjct: 203 PG-IEWTMLG 211


>gi|312958838|ref|ZP_07773357.1| type III secretion system rscJ [Pseudomonas fluorescens WH6]
 gi|311286608|gb|EFQ65170.1| type III secretion system rscJ [Pseudomonas fluorescens WH6]
          Length = 265

 Score = 42.7 bits (99), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 71/131 (54%), Gaps = 12/131 (9%)

Query: 90  VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISG 148
           +G+A   L A GLP  +  +  + F K     +++ ++E  R + AL  E+  T+ +I G
Sbjct: 67  IGRAVRTLEAVGLPKVARTTLGDTFRKDGV--ISTPLEERARYIYALSQELEATLSNIDG 124

Query: 149 IVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNLDMG 205
           ++ ARVH+V+P+  +  +     +ASV I+    ++P   +S   +R +VA+++P +   
Sbjct: 125 VIVARVHVVLPERIAPGEPVQPASASVFIKHDPRLDPDNIRS--RVRRMVASSIPGMS-- 180

Query: 206 DVTVLDSTGKL 216
             T +D+  KL
Sbjct: 181 --TTVDNPQKL 189


>gi|16082747|ref|NP_395193.1| needle complex inner membrane lipoprotein [Yersinia pestis CO92]
 gi|31795324|ref|NP_857723.1| needle complex inner membrane lipoprotein [Yersinia pestis KIM]
 gi|31795467|ref|NP_857918.1| needle complex inner membrane lipoprotein [Yersinia pestis KIM]
 gi|45478525|ref|NP_995352.1| putative type III secretion lipoprotein YscJ [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51593928|ref|YP_068495.1| yscJ, ylpB; putative type III secretion lipoprotein [Yersinia
           pseudotuberculosis IP 32953]
 gi|108793648|ref|YP_636797.1| type III secretion lipoprotein [Yersinia pestis Antiqua]
 gi|145597125|ref|YP_001154589.1| type III secretion lipoprotein [Yersinia pestis Pestoides F]
 gi|149192680|ref|YP_001293912.1| putative type III secretion lipoprotein [Yersinia pestis CA88-4125]
 gi|162417757|ref|YP_001604492.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           Angola]
 gi|165927768|ref|ZP_02223600.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165940079|ref|ZP_02228613.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166011735|ref|ZP_02232633.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166214472|ref|ZP_02240507.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167401937|ref|ZP_02307423.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167422389|ref|ZP_02314142.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167422456|ref|ZP_02314209.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167422890|ref|ZP_02314643.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167426845|ref|ZP_02318598.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|186897504|ref|YP_001874615.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Yersinia
           pseudotuberculosis PB1/+]
 gi|229896875|ref|ZP_04512035.1| putative type III secretion lipoprotein [Yersinia pestis Pestoides
           A]
 gi|229900230|ref|ZP_04515366.1| putative type III secretion lipoprotein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|270491089|ref|ZP_06208161.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Yersinia pestis KIM D27]
 gi|294496851|ref|YP_003560548.1| needle complex inner membrane lipoprotein [Yersinia pestis Z176003]
 gi|322836586|ref|YP_004210082.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis Java
           9]
 gi|57015226|sp|P69972|YSCJ_YERPE RecName: Full=Yop proteins translocation lipoprotein J; AltName:
           Full=Lipoprotein ylpB; AltName: Full=Low calcium
           response locus protein KA; Flags: Precursor
 gi|57015227|sp|P69973|YSCJ_YERPS RecName: Full=Yop proteins translocation lipoprotein J; AltName:
           Full=Lipoprotein ylpB; AltName: Full=Low calcium
           response locus protein KA; Flags: Precursor
 gi|155466|gb|AAA27651.1| lcrKa [Yersinia pseudotuberculosis]
 gi|2996284|gb|AAC62607.1| Yop proteins translocation lipoprotein J [Yersinia pestis KIM 10]
 gi|3822055|gb|AAC69775.1| type III secretion protein [Yersinia pestis KIM 10]
 gi|5832479|emb|CAB54936.1| putative type III secretion lipoprotein [Yersinia pestis CO92]
 gi|45357147|gb|AAS58543.1| putative type III secretion lipoprotein YscJ [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51591625|emb|CAF25429.1| yscJ, ylpB; putative type III secretion lipoprotein [Yersinia
           pseudotuberculosis IP 32953]
 gi|108782195|gb|ABG16250.1| type III secretion lipoprotein [Yersinia pestis Antiqua]
 gi|145212893|gb|ABP42299.1| type III secretion lipoprotein [Yersinia pestis Pestoides F]
 gi|148872338|gb|ABR14828.1| putative type III secretion lipoprotein [Yersinia pestis CA88-4125]
 gi|162354777|gb|ABX88724.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           Angola]
 gi|165911989|gb|EDR30632.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165920204|gb|EDR37505.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165989342|gb|EDR41643.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166204365|gb|EDR48845.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166958180|gb|EDR55201.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|166958626|gb|EDR55647.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|166958693|gb|EDR55714.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167048665|gb|EDR60073.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167054144|gb|EDR63971.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|186700530|gb|ACC91158.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Yersinia pseudotuberculosis PB1/+]
 gi|229686750|gb|EEO78830.1| putative type III secretion lipoprotein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229700146|gb|EEO88185.1| putative type III secretion lipoprotein [Yersinia pestis Pestoides
           A]
 gi|262363863|gb|ACY60583.1| needle complex inner membrane lipoprotein [Yersinia pestis D106004]
 gi|262364019|gb|ACY64356.1| needle complex inner membrane lipoprotein [Yersinia pestis D182038]
 gi|270334832|gb|EFA45611.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Yersinia pestis KIM D27]
 gi|294352439|gb|ADE66496.1| needle complex inner membrane lipoprotein [Yersinia pestis Z176003]
 gi|317374463|gb|ADV16638.1| type III secretion bridge between inner and outermembrane
           lipoprotein [Yersinia pestis]
 gi|320017494|gb|ADW01065.1| putative type III secretion lipoprotein [Yersinia pestis biovar
           Medievalis str. Harbin 35]
 gi|321161360|gb|ADW67066.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis Java
           9]
          Length = 244

 Score = 42.7 bits (99), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 4/103 (3%)

Query: 78  DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR-ALE 136
           D    + V  S V +A   L  +G P  S ++  ++F K     ++S ++E+ R+  A  
Sbjct: 53  DGKIKLLVEESDVAQAIDILKRKGYPHESFSTLQDVFPKDGL--ISSPIEELARLNYAKA 110

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIR 178
            EI+RT+  I G++ ARVH+V+P+  + + K G   +ASV I+
Sbjct: 111 QEISRTLSEIDGVLVARVHVVLPEEQNNKGKKGVAASASVFIK 153


>gi|238924170|ref|YP_002937686.1| flagellar biosynthesis/type III secretory pathway lipoprotein
           [Eubacterium rectale ATCC 33656]
 gi|238875845|gb|ACR75552.1| flagellar biosynthesis/type III secretory pathway lipoprotein
           [Eubacterium rectale ATCC 33656]
 gi|291524899|emb|CBK90486.1| flagellar basal-body M-ring protein/flagellar hook-basal body
           protein (fliF) [Eubacterium rectale DSM 17629]
 gi|291529040|emb|CBK94626.1| flagellar basal-body M-ring protein/flagellar hook-basal body
           protein (fliF) [Eubacterium rectale M104/1]
          Length = 533

 Score = 42.7 bits (99), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 83/385 (21%), Positives = 164/385 (42%), Gaps = 37/385 (9%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           AILD++  ++K   +  R+   +L S++ V I+  +     ++ P    L      S+ +
Sbjct: 7   AILDKITAWWKKFNTKQRS---VLISIVAVVIVALVILGVVISRPTQVELVEAQSASEAS 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN--S 119
            I   L + NI + + D+     V  S    A + L   G+P+ + +      D V   S
Sbjct: 64  TIKGVLEDNNISYEV-DSKLVFFVNKSDEVNAIMALGDNGIPAQAYS-----IDNVTDGS 117

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM-GSFRKIGARPTASVMIR 178
           F  T   ++      LE ++   ++  S +  A V I MPD  G+  K     TA+V + 
Sbjct: 118 FSTTEADKQKKYQVYLEDKLKDHLEKQSYVNEASVDITMPDKDGTILKSKEEATAAVTLG 177

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA---NEMERNILGKSLSIVQ 235
             +      A AI  LVA A+ N     +T++D    +L +   ++    +    LS  Q
Sbjct: 178 LKDSITDDQAYAIARLVATALGNDTTKGITIIDKKANVLYSGGDSDTSAGLATSQLSYKQ 237

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-----TQQIREIVYDPDSKVERSIRL 290
            ++ +++  + K L +     N  S +   +N+D     T+  ++    PD + +  +  
Sbjct: 238 KLEEQVKNEVKKTLES----SNIFSNIEVGMNLDIDFSKTETAQKNYTLPDGQTDTGLLD 293

Query: 291 SKDAQRSETSQPESAV----TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346
           S+   +S+ +  ++AV    +   +  + +    P   S+ + DKK       +N + I 
Sbjct: 294 SESNYQSDATNGQAAVPGTDSNSDDTTYTTQDGTPSESSITDNDKK------YLNDEKIT 347

Query: 347 TTHDN---YKLERLSIAVVVNKGRL 368
           T+ ++    K +  SI VV  + ++
Sbjct: 348 TSKNDGGSIKYDSSSITVVATRYKV 372


>gi|310923250|emb|CBW54716.1| YscJ, lipoprotein, signal peptidase II cleavage site LFLTG-CKVDL,
           length difference in automated annotation (should start
           at 35114 gtg/V, point mutation here from M to V), PMID
           18227263 [Yersinia enterocolitica (type O:8)]
 gi|318608181|emb|CBY78155.1| type III secretion bridge between inner and outermembrane
           lipoprotein (YscJ,HrcJ,EscJ, PscJ) [Yersinia
           enterocolitica subsp. palearctica Y11]
          Length = 210

 Score = 42.7 bits (99), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 4/103 (3%)

Query: 78  DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR-ALE 136
           D    + V  S V +A   L  +G P  S ++  ++F K     ++S ++E+ R+  A  
Sbjct: 19  DGKIKLLVEESDVAQAIDILKRKGYPHESFSTLQDVFPKDGL--ISSPIEELARLNYAKA 76

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIR 178
            EI+RT+  I G++ ARVH+V+P+  + + K G   +ASV I+
Sbjct: 77  QEISRTLSEIDGVLVARVHVVLPEEQNNKGKKGVAASASVFIK 119


>gi|194350687|gb|ACF53774.1| HrcJ [Erwinia rhapontici]
          Length = 144

 Score = 42.7 bits (99), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 70/132 (53%), Gaps = 8/132 (6%)

Query: 75  RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR-VR 133
           R+   G ++ + +  + +A   L A GLP  S  +  E+F K  S  +++ ++E  R + 
Sbjct: 17  RVEKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK--SGVISTPLEERARYIY 74

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEA 190
           AL  E+  T+  I G++ ARVH+V+P+  +  +     +A+V I+    + P   +    
Sbjct: 75  ALSQEVEATLAQIDGVMVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGMEP--R 132

Query: 191 IRHLVAAAVPNL 202
           IR +VA+++P L
Sbjct: 133 IRRMVASSIPGL 144


>gi|10955579|ref|NP_052420.1| hypothetical protein pYVe227_p43 [Yersinia enterocolitica]
 gi|28373017|ref|NP_783695.1| hypothetical protein pYVa12790_p42 [Yersinia enterocolitica]
 gi|32470307|ref|NP_863542.1| hypothetical protein pYVe8081_p37 [Yersinia enterocolitica]
 gi|122815831|ref|YP_001004097.1| type III secretion lipoprotein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|332163601|ref|YP_004424943.1| type III secretion lipoprotein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|267571|sp|Q01251|YSCJ_YEREN RecName: Full=Yop proteins translocation lipoprotein J; AltName:
           Full=Lipoprotein ylpB; Flags: Precursor
 gi|14579365|gb|AAK69242.1|AF336309_37 YscJ [Yersinia enterocolitica]
 gi|155559|gb|AAC37027.1| yscJ [Yersinia enterocolitica]
 gi|4324366|gb|AAD16843.1| YscJ [Yersinia enterocolitica W22703]
 gi|28302112|gb|AAN37545.2| YscJ [Yersinia enterocolitica]
 gi|121663705|emb|CAL10067.1| type III secretion lipoprotein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|325667831|gb|ADZ44474.1| type III secretion lipoprotein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 244

 Score = 42.7 bits (99), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 4/103 (3%)

Query: 78  DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR-ALE 136
           D    + V  S V +A   L  +G P  S ++  ++F K     ++S ++E+ R+  A  
Sbjct: 53  DGKIKLLVEESDVAQAIDILKRKGYPHESFSTLQDVFPKDGL--ISSPIEELARLNYAKA 110

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIR 178
            EI+RT+  I G++ ARVH+V+P+  + + K G   +ASV I+
Sbjct: 111 QEISRTLSEIDGVLVARVHVVLPEEQNNKGKKGVAASASVFIK 153


>gi|282891204|ref|ZP_06299707.1| type III secretion lipoprotein SctJ [Parachlamydia acanthamoebae
           str. Hall's coccus]
 gi|281498897|gb|EFB41213.1| type III secretion lipoprotein SctJ [Parachlamydia acanthamoebae
           str. Hall's coccus]
          Length = 321

 Score = 42.4 bits (98), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 91/208 (43%), Gaps = 26/208 (12%)

Query: 24  ILASVILVPIMLFMAARFFVNSPHYDNLYVK-LEVSDVNRISVALSEANID-FRI----- 76
           IL+ ++    +L MA  F + S       V  L+  + N I V LS   ID  ++     
Sbjct: 6   ILSKLVGTVFLLCMA--FLLTSCESRKTIVNGLDEKEANEIVVFLSSKGIDAMKVQSTEG 63

Query: 77  SDNGSS------ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT-SFMQEI 129
           +  G S      ISV +    +A   L   GLP     S   +F  V   GL  S +QE 
Sbjct: 64  AGGGGSKIVLWDISVSADKATQAMSILNQSGLPRRKPQSLLGIFSNV---GLVPSELQER 120

Query: 130 TRVRA-LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARP---TASVMIR---AINP 182
            R +A L  +IA TI+ I G++ A V I  P+       G +     ASV ++    ++ 
Sbjct: 121 IRYQAGLAEQIASTIRKIDGVLDAEVQISFPEEDPLNPTGEKKGKIVASVYVKHSGVLDD 180

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
                   I+ LVAA+V  LD  +VTV+
Sbjct: 181 PNSHLVTKIKRLVAASVTGLDYDNVTVI 208


>gi|83645997|ref|YP_434432.1| type III secretory pathway, lipoprotein EscJ [Hahella chejuensis
           KCTC 2396]
 gi|83634040|gb|ABC30007.1| Type III secretory pathway, lipoprotein EscJ [Hahella chejuensis
           KCTC 2396]
          Length = 265

 Score = 42.4 bits (98), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 3/98 (3%)

Query: 82  SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR-VRALEGEIA 140
           ++SV  + + +A   L ++G P     S  ELF K     ++S ++E  R +  L  EIA
Sbjct: 68  ALSVERAQLSQAIRLLKSRGYPRDDFTSVGELFKKDGL--ISSPLEERARYIYGLSQEIA 125

Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178
            T+  + G++ ARVH+VMP++ + +      +ASV I+
Sbjct: 126 ATLSQLDGVITARVHVVMPEVENKKAPLKVSSASVFIK 163


>gi|126174186|ref|YP_001050335.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Shewanella baltica OS155]
 gi|125997391|gb|ABN61466.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Shewanella baltica OS155]
          Length = 239

 Score = 42.4 bits (98), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 2/91 (2%)

Query: 122 LTSFMQEITRVRAL-EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-A 179
           +TS  QE  ++  L E ++ RT+ S+ G+++ARV I  P   + R++    +ASV I+ +
Sbjct: 95  VTSPAQEEAKMGYLKEQQLERTLSSMDGVISARVSIAEPAPDTGRQLAQTKSASVYIKYS 154

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
              ++  +   I+ LV  AVP L   +++V 
Sbjct: 155 PQANLTNTENQIKSLVQNAVPGLSYDNISVF 185


>gi|271500435|ref|YP_003333460.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Dickeya
           dadantii Ech586]
 gi|270343990|gb|ACZ76755.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Dickeya
           dadantii Ech586]
          Length = 268

 Score = 42.4 bits (98), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 79/158 (50%), Gaps = 8/158 (5%)

Query: 50  NLYVKLEVSDVNRISVALSEANI--DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
            L+  L  +D N +  AL   +I  + R    G SI +    + ++   L A GLP  + 
Sbjct: 27  ELHRGLSENDANEVIAALGGYHIGAEKRTDKAGVSILIDVKDMERSVNILNAAGLPRQAR 86

Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            +  ++F K     +++ ++E  R + AL  E+  T+  I G++ ARVH+V+P+  +  +
Sbjct: 87  TNLGQVFQKTGV--ISTPLEERARYIYALSQEVESTLTQIDGVLVARVHVVLPERIAPGE 144

Query: 167 IGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNL 202
                +A+V I+   P +   +    IR +VA+++P L
Sbjct: 145 PIQPASAAVFIK-YRPELEPDSIEPRIRRMVASSIPGL 181


>gi|194350713|gb|ACF53787.1| HrcJ [Pectobacterium carotovorum subsp. brasiliensis]
          Length = 120

 Score = 42.0 bits (97), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 61/110 (55%), Gaps = 8/110 (7%)

Query: 97  LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVH 155
           L A GLP  S  +  E+F K  S  +++ ++E  R + AL  E+  T+  I G++ ARVH
Sbjct: 15  LNAAGLPKQSRTNLGEVFQK--SGVISTPLEERARYIYALSQEVEATLAQIDGVLVARVH 72

Query: 156 IVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNL 202
           +V+P+  +  +     +A+V I+    + P   +  + IR +VA+++P L
Sbjct: 73  VVLPERIAPGEPVHPASAAVFIKYRAELEPDGME--QRIRRMVASSIPGL 120


>gi|62185504|ref|YP_220289.1| putative type III export protein [Chlamydophila abortus S26/3]
 gi|62148571|emb|CAH64343.1| putative type III export protein [Chlamydophila abortus S26/3]
          Length = 330

 Score = 42.0 bits (97), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 52/139 (37%), Positives = 72/139 (51%), Gaps = 23/139 (16%)

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT-SFMQEITRVRALEG---E 138
           ISVP++ + +A   L   GLP     S  +LF K    GL  S MQE  ++R  EG   +
Sbjct: 72  ISVPAAQITEALAILNQAGLPRMKGTSLLDLFAKQ---GLVPSEMQE--KIRYQEGLSEQ 126

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGAR--P-TASVMI--RAI--NPSVYKSAEAI 191
           +A TI+ + GIV A V I      SF        P TASV I  R +  NP+    ++ I
Sbjct: 127 MASTIRKMDGIVDASVQI------SFTTEAEDNLPLTASVYIKHRGVLDNPNSIMVSK-I 179

Query: 192 RHLVAAAVPNLDMGDVTVL 210
           + LVA+AVP L   +V+V+
Sbjct: 180 KRLVASAVPGLSTENVSVI 198


>gi|254228230|ref|ZP_04921659.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio
           sp. Ex25]
 gi|262394115|ref|YP_003285969.1| type III secretion bridge between inner and outermembrane
           lipoprotein (YscJ,HrcJ,EscJ PscJ) [Vibrio sp. Ex25]
 gi|151939303|gb|EDN58132.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio
           sp. Ex25]
 gi|262337709|gb|ACY51504.1| type III secretion bridge between inner and outermembrane
           lipoprotein (YscJ,HrcJ,EscJ PscJ) [Vibrio sp. Ex25]
          Length = 247

 Score = 42.0 bits (97), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 12/158 (7%)

Query: 78  DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR-VRALE 136
           DN   + V SS +  A   L  +G P    ++  E+F K +   ++S + E  R V A  
Sbjct: 53  DNTVKLMVDSSQIAFAVDALKRKGYPREQFSTLKEVFPKDDL--ISSPLAERARLVYAKS 110

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPT---ASVMIR-AINPSVYKSAEAIR 192
            E++ T+  I G++ ARVH+V+ D     + G RPT   ASV I+ A + ++      I+
Sbjct: 111 QELSSTLSQIDGVLVARVHVVLEDQD--LRPGERPTPASASVFIKHAADIALDSYVPQIK 168

Query: 193 HLVAAAVPNLDMGDVTVL---DSTGKLLTANEMERNIL 227
            LV  ++  L+   ++V+    S  ++ T N   ++IL
Sbjct: 169 LLVNNSIEGLNYDRISVVMVPSSEVRIATQNNQFKSIL 206


>gi|73532528|dbj|BAE19822.1| flagellar M-ring protein [Edwardsiella tarda]
          Length = 125

 Score = 41.6 bits (96), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 4/83 (4%)

Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINK 390
           +++E +NYE++     T      +ERLS+AVVVN    T     +  Q K+D    +IN 
Sbjct: 38  RRDETTNYEVDRTIRHTQARAGNIERLSVAVVVNYATDTNGKEIALSQEKMD----QINN 93

Query: 391 IVSAATGINSRRGDTITITSMDF 413
           +V  A G +  RGDT+++ +  F
Sbjct: 94  LVREAMGFSQSRGDTLSVVNTPF 116


>gi|194350689|gb|ACF53775.1| HrcJ [Erwinia rhapontici]
          Length = 146

 Score = 41.6 bits (96), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 70/132 (53%), Gaps = 8/132 (6%)

Query: 75  RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR-VR 133
           R+   G ++ + +  + +A   L A GLP  S  +  E+F +  S  +++ ++E  R + 
Sbjct: 19  RVEKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQR--SGVISTPLEERARYIY 76

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEA 190
           AL  E+  T+  I G++ ARVH+V+P+  +  +     +A+V I+    + P   +    
Sbjct: 77  ALSQEVEATLAQIDGVMVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGMEP--R 134

Query: 191 IRHLVAAAVPNL 202
           IR +VA+++P L
Sbjct: 135 IRRMVASSIPGL 146


>gi|269967253|ref|ZP_06181317.1| putative type III secretion lipoprotein [Vibrio alginolyticus 40B]
 gi|269828109|gb|EEZ82379.1| putative type III secretion lipoprotein [Vibrio alginolyticus 40B]
          Length = 237

 Score = 41.2 bits (95), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 12/158 (7%)

Query: 78  DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR-VRALE 136
           DN   + V SS +  A   L  +G P    ++  E+F K +   ++S + E  R V A  
Sbjct: 43  DNTVKLMVDSSQIAFAVDALKRKGYPREQFSTLKEVFPKDDL--ISSPLAERARLVYAKS 100

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPT---ASVMIR-AINPSVYKSAEAIR 192
            E++ T+  I G++ ARVH+V+ D     + G RPT   ASV I+ A + ++      I+
Sbjct: 101 QELSSTLSQIDGVLVARVHVVLEDQD--LRPGERPTPASASVFIKHAADIALDSYVPQIK 158

Query: 193 HLVAAAVPNLDMGDVTVL---DSTGKLLTANEMERNIL 227
            LV  ++  L+   ++V+    S  ++ T N   ++IL
Sbjct: 159 LLVNNSIEGLNYDRISVVMVPSSEVRVATQNNQFKSIL 196


>gi|91224456|ref|ZP_01259718.1| putative type III secretion lipoprotein [Vibrio alginolyticus
           12G01]
 gi|91190798|gb|EAS77065.1| putative type III secretion lipoprotein [Vibrio alginolyticus
           12G01]
 gi|262284512|gb|ACY41049.1| VscJ [Vibrio alginolyticus]
          Length = 247

 Score = 41.2 bits (95), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 12/158 (7%)

Query: 78  DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR-VRALE 136
           DN   + V SS +  A   L  +G P    ++  E+F K +   ++S + E  R V A  
Sbjct: 53  DNTVKLMVDSSQIAFAVDALKRKGYPREQFSTLKEVFPKDDL--ISSPLAERARLVYAKS 110

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPT---ASVMIR-AINPSVYKSAEAIR 192
            E++ T+  I G++ ARVH+V+ D     + G RPT   ASV I+ A + ++      I+
Sbjct: 111 QELSSTLSQIDGVLVARVHVVLEDQD--LRPGERPTPASASVFIKHAADIALDSYVPQIK 168

Query: 193 HLVAAAVPNLDMGDVTVL---DSTGKLLTANEMERNIL 227
            LV  ++  L+   ++V+    S  ++ T N   ++IL
Sbjct: 169 LLVNNSIEGLNYDRISVVMVPSSEVRVATQNNQFKSIL 206


>gi|15835462|ref|NP_297221.1| type III secretion protein SctJ [Chlamydia muridarum Nigg]
 gi|270285642|ref|ZP_06195036.1| type III secretion protein SctJ [Chlamydia muridarum Nigg]
 gi|270289651|ref|ZP_06195953.1| type III secretion protein SctJ [Chlamydia muridarum Weiss]
 gi|301337038|ref|ZP_07225240.1| type III secretion protein SctJ [Chlamydia muridarum MopnTet14]
 gi|7190875|gb|AAF39646.1| type III secretion protein SctJ [Chlamydia muridarum Nigg]
          Length = 328

 Score = 41.2 bits (95), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 50/137 (36%), Positives = 71/137 (51%), Gaps = 20/137 (14%)

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT-SFMQEITRVRALEG---E 138
           ISVP++ + +A   L   GLP     S  +LF K    GL  S MQE  ++R  EG   +
Sbjct: 72  ISVPAAQITEALAILNQAGLPRMKGTSLLDLFAKQ---GLVPSEMQE--KIRYQEGLSEQ 126

Query: 139 IARTIQSISGIVAARVHIVM-PDMGSFRKIGARPTASVMI--RAI--NPSVYKSAEAIRH 193
           +A TI+ + GIV A V I   P+           TASV I  R +  NP+    ++ I+ 
Sbjct: 127 MATTIRKMDGIVDASVQISFSPEEDQLPL-----TASVYIKHRGVLDNPNSIMVSK-IKR 180

Query: 194 LVAAAVPNLDMGDVTVL 210
           LVA+AVP L   +V+V+
Sbjct: 181 LVASAVPGLCPENVSVV 197


>gi|153836290|ref|ZP_01988957.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio
           parahaemolyticus AQ3810]
 gi|149750565|gb|EDM61310.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio
           parahaemolyticus AQ3810]
          Length = 248

 Score = 41.2 bits (95), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 78/155 (50%), Gaps = 11/155 (7%)

Query: 63  ISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           +S+ LSE  +  +    DN   + V SS +  A   L  +G P    ++  E+F K +  
Sbjct: 37  LSILLSEGVVATKEPDKDNKVKLMVDSSQIAFAVDALKRKGYPREQFSTLKEVFPKDDL- 95

Query: 121 GLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPT---ASVM 176
            ++S + E  R V A   E++ T+  I G++ ARVH+V+ D     + G RPT   ASV 
Sbjct: 96  -ISSPLAERARLVYAKSQELSSTLSQIDGVLVARVHVVLEDQD--LRPGERPTPASASVF 152

Query: 177 IR-AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
           I+ A + ++      I+ LV  ++  L+   ++V+
Sbjct: 153 IKHAADVALDSYVPQIKLLVNNSIEGLNYDRISVV 187


>gi|328468926|gb|EGF39886.1| putative type III secretion lipoprotein [Vibrio parahaemolyticus
           10329]
          Length = 248

 Score = 40.8 bits (94), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 78/155 (50%), Gaps = 11/155 (7%)

Query: 63  ISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           +S+ LSE  +  +    DN   + V SS +  A   L  +G P    ++  E+F K +  
Sbjct: 37  LSILLSEGVVATKEPDKDNKVKLMVDSSQIAFAVDALKRKGYPREQFSTLKEVFPKDDL- 95

Query: 121 GLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPT---ASVM 176
            ++S + E  R V A   E++ T+  I G++ ARVH+V+ D     + G RPT   ASV 
Sbjct: 96  -ISSPLAERARLVYAKSQELSSTLSQIDGVLVARVHVVLEDQD--LRPGERPTPASASVF 152

Query: 177 IR-AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
           I+ A + ++      I+ LV  ++  L+   ++V+
Sbjct: 153 IKHAADVALDSYVPQIKLLVNNSIEGLNYDRISVV 187


>gi|89897886|ref|YP_514996.1| type III secretion flagellar biosynthesis M-ring protein
           [Chlamydophila felis Fe/C-56]
 gi|89331258|dbj|BAE80851.1| type III secretion flagellar biosynthesis M-ring protein
           [Chlamydophila felis Fe/C-56]
          Length = 330

 Score = 40.8 bits (94), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 72/139 (51%), Gaps = 23/139 (16%)

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT-SFMQEITRVRALEG---E 138
           I+VP++ + +A   L   GLP     S  +LF K    GL  S MQE  ++R  EG   +
Sbjct: 72  IAVPAAQITEALAILNQAGLPRMKGTSLLDLFAKQ---GLVPSEMQE--KIRYQEGLSEQ 126

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGAR--P-TASVMI--RAI--NPSVYKSAEAI 191
           +A TI+ + GIV A V I      SF        P TASV I  R +  NP+    ++ I
Sbjct: 127 MASTIRKMDGIVDASVQI------SFTTEAEENLPLTASVYIKHRGVLDNPNSIMVSK-I 179

Query: 192 RHLVAAAVPNLDMGDVTVL 210
           + LVA+AVP L   +V+V+
Sbjct: 180 KRLVASAVPGLSTENVSVI 198


>gi|28898464|ref|NP_798069.1| putative type III secretion lipoprotein [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|260365094|ref|ZP_05777665.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio
           parahaemolyticus K5030]
 gi|260879510|ref|ZP_05891865.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio
           parahaemolyticus AN-5034]
 gi|260895015|ref|ZP_05903511.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio
           parahaemolyticus Peru-466]
 gi|28806682|dbj|BAC59953.1| putative type III secretion lipoprotein [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308085933|gb|EFO35628.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio
           parahaemolyticus Peru-466]
 gi|308093438|gb|EFO43133.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio
           parahaemolyticus AN-5034]
 gi|308111628|gb|EFO49168.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio
           parahaemolyticus K5030]
          Length = 248

 Score = 40.8 bits (94), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 78/155 (50%), Gaps = 11/155 (7%)

Query: 63  ISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           +S+ LSE  +  +    DN   + V SS +  A   L  +G P    ++  E+F K +  
Sbjct: 37  LSILLSEGVVATKEPDKDNKVKLMVDSSQIAFAVDALKRKGYPREQFSTLKEVFPKDDL- 95

Query: 121 GLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPT---ASVM 176
            ++S + E  R V A   E++ T+  I G++ ARVH+V+ D     + G RPT   ASV 
Sbjct: 96  -ISSPLAERARLVYAKSQELSSTLSQIDGVLVARVHVVLEDQD--LRPGERPTPASASVF 152

Query: 177 IR-AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
           I+ A + ++      I+ LV  ++  L+   ++V+
Sbjct: 153 IKHAADVALDSYVPQIKLLVNNSIEGLNYDRISVV 187


>gi|253988512|ref|YP_003039868.1| type III secretion component protein sctj [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211637906|emb|CAR66535.1| type iii secretion component protein sctj [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253779962|emb|CAQ83123.1| type iii secretion component protein sctj [Photorhabdus
           asymbiotica]
          Length = 245

 Score = 40.8 bits (94), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 6/115 (5%)

Query: 50  NLYVKLEVSDVNRISVALSEANI--DFRISDNGS-SISVPSSMVGKARIHLAAQGLPSSS 106
            LY  +   + N +   L EA I  D +   +G+  + V  S V +A   L ++G P  +
Sbjct: 22  ELYTGVSQKEGNEMLALLREAGISSDKQPDKDGNIKLLVEESDVAQAVEVLKSKGYPREN 81

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVR-ALEGEIARTIQSISGIVAARVHIVMPD 160
            +S  ++F K     ++S ++E  R+  A   EIART+  I G++ ARVH+V+P+
Sbjct: 82  FSSLQDVFPKDGL--ISSPVEERARLNFAKAQEIARTLSEIDGVLVARVHVVLPE 134


>gi|325917018|ref|ZP_08179257.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Xanthomonas vesicatoria ATCC 35937]
 gi|325536769|gb|EGD08526.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Xanthomonas vesicatoria ATCC 35937]
          Length = 254

 Score = 40.8 bits (94), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 11/117 (9%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR--ISDNGSS--ISVPSSMVGKARIHLAAQGLPSSS 106
           LY  L  +D N +   L  A +D      D+G +  I+ P + V  +   L A G+P   
Sbjct: 23  LYSGLTENDANDMLAVLLTAGVDAEKVTPDDGKTWAINAPHAQVAYSLEVLRAHGMPHER 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPD 160
             +  E+F K    GL S   E  RVR + G   ++++T+ +I G++AA V IV+P+
Sbjct: 83  HANLGEMFKKD---GLISTPTE-ERVRFIYGVSQQLSQTLSNIDGVIAADVEIVLPN 135


>gi|256004783|ref|ZP_05429758.1| flagellar M-ring protein FliF [Clostridium thermocellum DSM 2360]
 gi|281417197|ref|ZP_06248217.1| flagellar M-ring protein FliF [Clostridium thermocellum JW20]
 gi|255991233|gb|EEU01340.1| flagellar M-ring protein FliF [Clostridium thermocellum DSM 2360]
 gi|281408599|gb|EFB38857.1| flagellar M-ring protein FliF [Clostridium thermocellum JW20]
 gi|316940778|gb|ADU74812.1| flagellar M-ring protein FliF [Clostridium thermocellum DSM 1313]
          Length = 517

 Score = 40.8 bits (94), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 109/250 (43%), Gaps = 24/250 (9%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILV--PIMLFMAARFFVNSPHYDNLYVKL-EVSDVNR 62
           Q+  F+K+     +TRIL+ + +++V   I + M  R           YV L  V D + 
Sbjct: 11  QVTDFWKNLDKSQKTRILVTSGILVVVLTIAIVMLTR---------TTYVPLITVEDPDS 61

Query: 63  ISV---ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL--PSSSSNSGYELFDKV 117
           IS    AL E NI ++  + G  I V S    +A   LA+ GL  P  +    + L    
Sbjct: 62  ISAIEEALKERNIKYKHGE-GRRILVDSKDKNEAEFALASAGLTEPGMTFEDAWSLLKVS 120

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMGSFRKIGARPTASVM 176
           +S      + +  +  +L   IA+ ++    +  A + + +P D   F    +   A+V 
Sbjct: 121 SSESDKKQLWQNFKKNSL---IAK-LKMFDNVKDADIELTIPEDTMFFTDSKSEAKAAVR 176

Query: 177 IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIVQ 235
           I        +  E I  +VA+++  LD  +VTV+D+   +L  +  +  NI      +  
Sbjct: 177 ITPKGELTPEQVEGIVMVVASSIEGLDPKNVTVVDNNFNILNQDLSDGMNIPSSHYKLKL 236

Query: 236 AIQHEIEMNI 245
            I+ E+E NI
Sbjct: 237 RIKEELEKNI 246


>gi|329943273|ref|ZP_08292047.1| hypothetical protein G5Q_0963 [Chlamydophila psittaci Cal10]
 gi|332287851|ref|YP_004422752.1| putative type III secretion system protein [Chlamydophila psittaci
           6BC]
 gi|313848423|emb|CBY17427.1| putative type III export protein [Chlamydophila psittaci RD1]
 gi|325506893|gb|ADZ18531.1| putative type III secretion system protein [Chlamydophila psittaci
           6BC]
 gi|328814820|gb|EGF84810.1| hypothetical protein G5Q_0963 [Chlamydophila psittaci Cal10]
 gi|328915113|gb|AEB55946.1| type III secretion protein SctJ [Chlamydophila psittaci 6BC]
          Length = 330

 Score = 40.8 bits (94), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 52/139 (37%), Positives = 71/139 (51%), Gaps = 23/139 (16%)

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT-SFMQEITRVRALEG---E 138
           ISVP+  + +A   L   GLP     S  +LF K    GL  S MQE  ++R  EG   +
Sbjct: 72  ISVPAEQITEALAILNQAGLPRMKGTSLLDLFAKQ---GLVPSEMQE--KIRYQEGLSEQ 126

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGAR--P-TASVMI--RAI--NPSVYKSAEAI 191
           +A TI+ + GIV A V I      SF        P TASV I  R +  NP+    ++ I
Sbjct: 127 MASTIRKMDGIVDASVQI------SFTTEAEDNLPLTASVYIKHRGVLDNPNSIMVSK-I 179

Query: 192 RHLVAAAVPNLDMGDVTVL 210
           + LVA+AVP L   +V+V+
Sbjct: 180 KRLVASAVPGLSTENVSVI 198


>gi|166714023|ref|ZP_02245230.1| HrpB3 [Xanthomonas oryzae pv. oryzicola BLS256]
 gi|61219462|gb|AAX40639.1| HrpB3 [Xanthomonas oryzae pv. oryzicola]
          Length = 254

 Score = 40.8 bits (94), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 11/117 (9%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106
           LY  L  +D N +   L  A +D      D+G + +V  PS  V  +   L A GLP   
Sbjct: 23  LYSGLTENDANAMLEVLLHAGVDASKVTPDDGKTWAVNAPSDQVSYSLETLRAHGLPHER 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPD 160
             +  E+F K    GL S   E  RVR + G   ++++T+ +I G+++A V IV+P+
Sbjct: 83  HANLGEMFKK---DGLISTPTE-ERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPN 135


>gi|125972986|ref|YP_001036896.1| flagellar M-ring protein FliF [Clostridium thermocellum ATCC 27405]
 gi|125713211|gb|ABN51703.1| flagellar M-ring protein FliF [Clostridium thermocellum ATCC 27405]
          Length = 517

 Score = 40.8 bits (94), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 109/250 (43%), Gaps = 24/250 (9%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILV--PIMLFMAARFFVNSPHYDNLYVKL-EVSDVNR 62
           Q+  F+K+     +TRIL+ + +++V   I + M  R           YV L  V D + 
Sbjct: 11  QVTDFWKNLDKSQKTRILVTSGILVVVLTIAIVMLTR---------TTYVPLITVQDPDS 61

Query: 63  ISV---ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL--PSSSSNSGYELFDKV 117
           IS    AL E NI ++  + G  I V S    +A   LA+ GL  P  +    + L    
Sbjct: 62  ISAIEEALKERNIKYKHGE-GRRILVDSKDKNEAEFALASAGLTEPGMTFEDAWSLLKVS 120

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMGSFRKIGARPTASVM 176
           +S      + +  +  +L   IA+ ++    +  A + + +P D   F    +   A+V 
Sbjct: 121 SSESDKKQLWQNFKKNSL---IAK-LKMFDNVKDADIELTIPEDTMFFTDSKSEAKAAVR 176

Query: 177 IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIVQ 235
           I        +  E I  +VA+++  LD  +VTV+D+   +L  +  +  NI      +  
Sbjct: 177 ITPKGELTPEQVEGIVMVVASSIEGLDPKNVTVVDNNFNILNQDLSDGMNIPSSHYKLKL 236

Query: 236 AIQHEIEMNI 245
            I+ E+E NI
Sbjct: 237 RIKEELEKNI 246


>gi|330443944|ref|YP_004376930.1| type III secretion protein SctJ [Chlamydophila pecorum E58]
 gi|328807054|gb|AEB41227.1| type III secretion protein SctJ [Chlamydophila pecorum E58]
          Length = 330

 Score = 40.8 bits (94), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 69/136 (50%), Gaps = 18/136 (13%)

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT-SFMQEITRVRALEG---E 138
           ISVPS+ + +A   L   GLP     S  +LF K    GL  S +QE  ++R  EG   +
Sbjct: 72  ISVPSAQITEALAILNQAGLPRMKGTSLLDLFAKQ---GLVPSELQE--KIRYQEGLSEQ 126

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI--RAI--NPSVYKSAEAIRHL 194
           +A TI+ + GIV A V I          +    TASV +  R +  NP+    A  I+ L
Sbjct: 127 MASTIRKMDGIVDASVQISFSTEEDVVPL----TASVYVKHRGVLDNPNSIM-ASKIKRL 181

Query: 195 VAAAVPNLDMGDVTVL 210
           +A+AVP L   +V+V+
Sbjct: 182 IASAVPGLTPENVSVV 197


>gi|266623336|ref|ZP_06116271.1| flagellar M-ring protein FliF [Clostridium hathewayi DSM 13479]
 gi|288864874|gb|EFC97172.1| flagellar M-ring protein FliF [Clostridium hathewayi DSM 13479]
          Length = 539

 Score = 40.8 bits (94), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 69/137 (50%), Gaps = 8/137 (5%)

Query: 81  SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140
             ++VP + VG   + ++  G P ++    +++F     F  T F +    +  L+  I 
Sbjct: 87  GEVTVPENQVGDIMLDMSELGYPKTALP--FDIFSDNMGFTTTEFEKRQYLLLNLQDRIE 144

Query: 141 RTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMIRAINPSVYKSAE---AIRHLV 195
           RT++ ++GI  A V + + D  ++     GA  T +V +  + P    S E   AI++L+
Sbjct: 145 RTLKDMNGIKNAIVTLNVSDDSNYVWDDQGADSTGAVSL-TLMPDCELSPEKVGAIKNLI 203

Query: 196 AAAVPNLDMGDVTVLDS 212
           A +VP L   +VTV+++
Sbjct: 204 ANSVPRLLPENVTVVNA 220


>gi|84785890|gb|ABC62084.1| secretion and cellular translocation protein J [Chlamydophila
           psittaci]
          Length = 330

 Score = 40.8 bits (94), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 52/139 (37%), Positives = 71/139 (51%), Gaps = 23/139 (16%)

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT-SFMQEITRVRALEG---E 138
           ISVP+  + +A   L   GLP     S  +LF K    GL  S MQE  ++R  EG   +
Sbjct: 72  ISVPAEQITEALAILNQAGLPRMKGTSLLDLFAKQ---GLVPSEMQE--KIRYQEGLSEQ 126

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGAR--P-TASVMI--RAI--NPSVYKSAEAI 191
           +A TI+ + GIV A V I      SF        P TASV I  R +  NP+    ++ I
Sbjct: 127 MASTIRKMDGIVDASVQI------SFTTEAEDNLPLTASVYIKHRGVLDNPNSIMVSK-I 179

Query: 192 RHLVAAAVPNLDMGDVTVL 210
           + LVA+AVP L   +V+V+
Sbjct: 180 KRLVASAVPGLSTENVSVI 198


>gi|303240288|ref|ZP_07326807.1| flagellar M-ring protein FliF [Acetivibrio cellulolyticus CD2]
 gi|302592198|gb|EFL61927.1| flagellar M-ring protein FliF [Acetivibrio cellulolyticus CD2]
          Length = 524

 Score = 40.8 bits (94), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 53/254 (20%), Positives = 112/254 (44%), Gaps = 31/254 (12%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIM--LFMAARFFVNSPHYDNLYVKL----EVSD 59
           ++ + +K+     + RI ++++++++ I   + M  R           YV L    +  D
Sbjct: 11  RITELWKNLDKSQKGRIYVISAILVIAITVSIVMLTR---------TTYVPLVTIDDTKD 61

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I   L +  I+++  + G+ I V S    KA   LA+ G  SS    G    D  N 
Sbjct: 62  AAEIEKVLQDKGINYKPGE-GNKILVDSKEKNKAEFALASSGFTSS----GMNFEDAWNL 116

Query: 120 FGLTSFMQEITRVRA--LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
             +TS   +  ++     +  +   ++    +  A + + MP    F    +   A+  +
Sbjct: 117 VSITSTESDKKQLWENFKKNSLVAKLKMFDNVRDADIEVTMPKDSLFFDDTSSDKATAFV 176

Query: 178 RAINPSVYKSAEAIRHLVA---AAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIV 234
           R I+P    ++E ++ +V+   A++  LD  DVTV+D+   +L+ +    + +G + +  
Sbjct: 177 R-IDPKGEITSEQVKGIVSVVSASIDGLDPKDVTVVDNNFNILSTD--ASDAIGDTSTQY 233

Query: 235 Q---AIQHEIEMNI 245
           +    ++ E+E NI
Sbjct: 234 KMKLKVKQELEKNI 247


>gi|37527647|ref|NP_930991.1| Type III secretion component protein SctJ [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36787082|emb|CAE16157.1| Type III secretion component protein SctJ [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 245

 Score = 40.4 bits (93), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 6/115 (5%)

Query: 50  NLYVKLEVSDVNRISVALSEANI--DFRISDNGS-SISVPSSMVGKARIHLAAQGLPSSS 106
            LY  +   + N +   L EA I  D +   +G+  + V  S V +A   L  +G P  +
Sbjct: 22  ELYTDVSQKEGNEMLALLREAGISSDKQPDKDGNIKLLVEESDVAQAVEVLKRKGYPREN 81

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVR-ALEGEIARTIQSISGIVAARVHIVMPD 160
            +S  ++F K     ++S ++E  R+  A   EIART+  I G++ ARVH+V+P+
Sbjct: 82  FSSLQDVFPKDGL--ISSPIEERARLNFAKAQEIARTLSEIDGVLVARVHVVLPE 134


>gi|119953090|ref|YP_945299.1| flagellar MS-ring protein [Borrelia turicatae 91E135]
 gi|119861861|gb|AAX17629.1| flagellar M-ring protein FliF [Borrelia turicatae 91E135]
          Length = 568

 Score = 40.4 bits (93), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 48/220 (21%), Positives = 101/220 (45%), Gaps = 12/220 (5%)

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
           ++RI   L   ++++ I+ +G       +M  K R  L  + L     +  + LFD ++ 
Sbjct: 64  LDRIVQRLDRESVEYIITADGKIYLSDENMSKKMRAILVREELVPVHMDP-WSLFD-IDR 121

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           + +T F + +   R++   + + I ++  + A  +++VMP+   F++      ASV I  
Sbjct: 122 WTITDFERNVNLRRSITRAVEQHIVALDDVDAVSINLVMPEKALFKESQEAVKASVRITP 181

Query: 180 INPSVY----KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL----TANEMER-NILGKS 230
              S      K  E +  L+  A+  L+  ++ ++D+ G +L      + ++R ++  K 
Sbjct: 182 KPGSDIVTNRKKVEGLVKLIQYAIEGLESDNIAIVDNKGTVLNDFSNLDGIDRIDLAEKE 241

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDT 270
             +    +  +   I+ AL+  L VD F  A V  + +DT
Sbjct: 242 RKLKLKYESMLRDEIDSALSKVLSVDRFMIARV-NVTLDT 280


>gi|325921922|ref|ZP_08183733.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Xanthomonas gardneri ATCC 19865]
 gi|325547624|gb|EGD18667.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Xanthomonas gardneri ATCC 19865]
          Length = 254

 Score = 40.4 bits (93), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 11/117 (9%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106
           LY  L  +D N +   L  A +D      D+G + +V  P   V  A   L   G+P   
Sbjct: 23  LYSGLTENDANDMLAVLLTAGVDAEKLTPDDGKTWAVNAPHDQVAYALNVLRTHGMPHER 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPD 160
             +  E+F K    GL S   E  RVR + G   ++++T+ +I G++AA V IV+P+
Sbjct: 83  HANLGEMFKK---DGLISTPTE-ERVRFIYGVSQQLSQTLSNIDGVIAADVQIVLPN 135


>gi|188992467|ref|YP_001904477.1| HrcJ protein [Xanthomonas campestris pv. campestris str. B100]
 gi|167734227|emb|CAP52435.1| HrcJ protein [Xanthomonas campestris pv. campestris]
          Length = 254

 Score = 40.4 bits (93), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 11/117 (9%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106
           LY  L  +D N +   L  A +D      D+G + +V  P   V  A   L   G+P   
Sbjct: 23  LYSGLTENDANDMLAVLLTAGVDAEKLTPDDGKTWAVNAPHDQVAYALNVLRTHGMPHER 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPD 160
             +  E+F K    GL S   E  RVR + G   ++++T+ +I G++AA V IV+P+
Sbjct: 83  HANLGEMFKKD---GLISTPTE-ERVRFIYGVSQQLSQTLSNIDGVIAADVQIVLPN 135


>gi|27550044|gb|AAO18027.1| LscJ [Photorhabdus luminescens]
          Length = 245

 Score = 40.4 bits (93), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 6/115 (5%)

Query: 50  NLYVKLEVSDVNRISVALSEANI--DFRISDNGS-SISVPSSMVGKARIHLAAQGLPSSS 106
            LY  +   + N +   L EA I  D +   +G+  + V  S V +A   L  +G P  +
Sbjct: 22  ELYTGVSQKEGNEMLALLREAGISSDKQPDKDGNIKLLVEESDVAQAVEVLKRKGYPREN 81

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVR-ALEGEIARTIQSISGIVAARVHIVMPD 160
            +S  ++F K     ++S ++E  R+  A   EIART+  I G++ ARVH+V+P+
Sbjct: 82  FSSLQDVFPKDGL--ISSPIEERARLNFAKAQEIARTLSEIDGVLVARVHVVLPE 134


>gi|21230690|ref|NP_636607.1| HrcJ protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66769315|ref|YP_244077.1| HrcJ protein [Xanthomonas campestris pv. campestris str. 8004]
 gi|21112279|gb|AAM40531.1| HrcJ protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66574647|gb|AAY50057.1| HrcJ protein [Xanthomonas campestris pv. campestris str. 8004]
          Length = 254

 Score = 40.4 bits (93), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 11/117 (9%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106
           LY  L  +D N +   L  A +D      D+G + +V  P   V  A   L   G+P   
Sbjct: 23  LYSGLTENDANDMLAVLLTAGVDAEKLTPDDGKTWAVNAPHDQVAYALNVLRTHGMPHER 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPD 160
             +  E+F K    GL S   E  RVR + G   ++++T+ +I G++AA V IV+P+
Sbjct: 83  HANLGEMFKKD---GLISTPTE-ERVRFIYGVSQQLSQTLSNIDGVIAADVQIVLPN 135


>gi|29840690|ref|NP_829796.1| type III secretion protein SctJ [Chlamydophila caviae GPIC]
 gi|29835040|gb|AAP05674.1| type III secretion protein SctJ [Chlamydophila caviae GPIC]
          Length = 330

 Score = 40.4 bits (93), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 52/139 (37%), Positives = 71/139 (51%), Gaps = 23/139 (16%)

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT-SFMQEITRVRALEG---E 138
           ISVP+  + +A   L   GLP     S  +LF K    GL  S MQE  ++R  EG   +
Sbjct: 72  ISVPAPQITEALAILNQAGLPRMKGTSLLDLFAKQ---GLVPSEMQE--KIRYQEGLSEQ 126

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGAR--P-TASVMI--RAI--NPSVYKSAEAI 191
           +A TI+ + GIV A V I      SF        P TASV I  R +  NP+    ++ I
Sbjct: 127 MASTIRKMDGIVDASVQI------SFTTDAEDNLPLTASVYIKHRGVLDNPNSIMVSK-I 179

Query: 192 RHLVAAAVPNLDMGDVTVL 210
           + LVA+AVP L   +V+V+
Sbjct: 180 KRLVASAVPGLSTENVSVI 198


>gi|257457887|ref|ZP_05623046.1| flagellar M-ring protein FliF [Treponema vincentii ATCC 35580]
 gi|257444600|gb|EEV19684.1| flagellar M-ring protein FliF [Treponema vincentii ATCC 35580]
          Length = 567

 Score = 40.0 bits (92), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 107/230 (46%), Gaps = 14/230 (6%)

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGK-ARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           RI + L+E N+   +S +G  ISV      +  R  L  + L   +++  + LFD V  +
Sbjct: 66  RIVLRLNEENVKATVSQSGI-ISVNDEQTARRMRAILLREDLIPQNTDP-WALFD-VERW 122

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
             T F + I   RA+  E+ + I+++  +  A V + +P+   F+      TASV++   
Sbjct: 123 TRTDFERNIDVRRAVIEEVRKHIKALDDVDDASVVVNLPEDKLFQADQNPVTASVILYPK 182

Query: 181 NPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMER-NILGKSL 231
             S      K  E I+ L+  AV  L   ++T+ D++G +L       + +R +I+ K  
Sbjct: 183 PGSDISTNRKKIEGIQKLLKYAVEGLTDDNITIADNSGNILNDFAGLKDFDRLSIIEKQQ 242

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRS-AVVAELNMDTQQIREIVYDP 280
            I+  ++ + E+ I   L    G D  R  ++  +++M  +    + Y P
Sbjct: 243 KIIAKLETQYEIKILNILQKTYGTDRVRDLSIKIDMDMSEKTAETVEYLP 292


>gi|15639390|ref|NP_218839.1| flagellar MS-ring protein [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189025632|ref|YP_001933404.1| flagellar MS-ring protein [Treponema pallidum subsp. pallidum SS14]
 gi|6016022|sp|O83414|FLIF_TREPA RecName: Full=Flagellar M-ring protein
 gi|3322682|gb|AAC65387.1| flagellar basal-body M ring protein (fliF) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189018207|gb|ACD70825.1| flagellar basal-body M ring protein [Treponema pallidum subsp.
           pallidum SS14]
 gi|291059789|gb|ADD72524.1| flagellar M-ring protein FliF [Treponema pallidum subsp. pallidum
           str. Chicago]
          Length = 567

 Score = 40.0 bits (92), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 155/382 (40%), Gaps = 52/382 (13%)

Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170
           + +FD V  +  T F + +   RA+   +   I+++  I  A V I +P+   F+     
Sbjct: 114 WAIFD-VERWTRTDFERRVDVRRAINNTVTNHIKALDDIDDAHVVINVPEDALFQADQKP 172

Query: 171 PTASVMI----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN- 225
            TASV+I     +   S  K  E I+ L+  AVP L   ++T++DS   +L   E  ++ 
Sbjct: 173 ITASVVIFPKPSSTIASERKKIEGIQKLLKLAVPGLKDENITIVDSDATVLNDFEGFKDA 232

Query: 226 ----ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRS---AVVAELNMDTQQIR---- 274
               ++ K   ++  ++ + E  +   L    G D  R     +  +L+  T Q      
Sbjct: 233 DRLSLIEKQQKMIAKLESQYEAKVLALLQKTYGKDRVRDLNIKIEMDLSEKTSQTTKYLP 292

Query: 275 -EIVYD-PDSKVERSIRLSKDAQRSETS---------QPESAVTVE-QNMPHVSDRKVPL 322
            EI  D PD+  + S  +      SET+          PE    VE Q  P   D    +
Sbjct: 293 IEIRQDNPDTPWDDSQVVPSVTSISETATTTWQGTGLNPEGPPGVEGQTPPAYKDMSNQV 352

Query: 323 PRSLENTDKKEEQ-SNYEIN----------TKSIATTHDNYKLERLSIAVVVNKGRLT-E 370
             S ++  KK+E  S  EIN          T S+    +  K        +V +G +  E
Sbjct: 353 GLSNQSVVKKQEAISKSEINEVVSPVLGRRTVSVNIDGEWRKKRDEHGRFIVKEGHIERE 412

Query: 371 VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT-----VQ 425
            +  SA++      L E  K V  A G ++ R D++++ ++ F     F+        VQ
Sbjct: 413 YIPISAEE------LREATKAVQDAIGFDAGRKDSVSVLNIKFDRTSEFDREDEHYLRVQ 466

Query: 426 VSFMDILSRHFATVINALVFLV 447
              M IL    +  I   +F+V
Sbjct: 467 QRNMIILYSLASVAIVLFIFMV 488


>gi|289663765|ref|ZP_06485346.1| HrcJ protein [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 254

 Score = 40.0 bits (92), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 11/117 (9%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106
           LY  L  +D N +   L  A +D      D+G + +V  P   V  +   L A G+P   
Sbjct: 23  LYSGLTENDANDMLAVLLRAGVDASKVTPDDGKTWAVNAPRDQVAYSLDVLRAHGMPHER 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPD 160
             +  E+F K    GL S   E  RVR + G   ++++T+ +I G++AA V IV+P+
Sbjct: 83  HANLGEMFKK---DGLISTPTE-ERVRFIYGVSQQLSQTLSNIDGVIAADVEIVLPN 135


>gi|169771395|ref|XP_001820167.1| G-patch domain protein (TFIP11) [Aspergillus oryzae RIB40]
 gi|83768026|dbj|BAE58165.1| unnamed protein product [Aspergillus oryzae]
          Length = 769

 Score = 40.0 bits (92), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 10/119 (8%)

Query: 165 RKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNL--DMGDVT-----VLDSTGKLL 217
           RK G+R      +    P    + E    +    VPN+   + D T     VL ST  L+
Sbjct: 168 RKQGSRSGTGTPVPRAKPQFRTAREMEEDMAGLEVPNVLKSLVDATGKEQRVLTSTAGLM 227

Query: 218 TANEMERNILGKSLSIVQAIQHEIEMNIN--KALAAFLGVDNFRSAVVAELNMDTQQIR 274
           T +E  +   G++L I Q  +H++E   +  K LA      +   A + E  MDTQQ+R
Sbjct: 228 TPSEFVKPGEGEALKIAQRARHDLEAFADEWKGLAERKKFIDLEEAQLVE-QMDTQQLR 285


>gi|120586845|ref|YP_961190.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Desulfovibrio vulgaris subsp. vulgaris DP4]
 gi|120564259|gb|ABM30002.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Desulfovibrio vulgaris DP4]
          Length = 271

 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 66/138 (47%), Gaps = 12/138 (8%)

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG--LTSFMQEITRVR-AL 135
           NG ++SV    V +A   L    LP       Y+   KV S    + S  +E  R+  A+
Sbjct: 65  NGYTLSVERRQVVQALEVLRENSLPREQ----YQSLGKVFSGDGMIASPSEEKARLSYAI 120

Query: 136 EGEIARTIQSISGIVAARVHIVMP--DMGSFRKIGARPTASVMIRAINPS-VYKSAEAIR 192
             E+A T   I G++ AR H+V+   D+G+  +  A  +A+V +R    S V      IR
Sbjct: 121 SQELADTFSRIDGVLTARAHVVLASSDVGTDTRTPA--SAAVFLRHTEDSPVVNLIPKIR 178

Query: 193 HLVAAAVPNLDMGDVTVL 210
            + A AVP LD   V+V+
Sbjct: 179 EMTAKAVPGLDYEKVSVM 196


>gi|325522916|gb|EGD01366.1| type III secretion protein SctJ [Burkholderia sp. TJI49]
          Length = 263

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 82/173 (47%), Gaps = 18/173 (10%)

Query: 51  LYVKLEVSDVNRISVALSEANI------DFR-ISD-NGSSISVPSSMVGKARIHLAAQGL 102
           LY  L   D N++   L +A I      D R  SD N   +SV    +  A   L A GL
Sbjct: 36  LYSGLSERDANQMVAVLGDAGISASKDNDARDTSDRNAWQVSVADGDMQSALTVLQANGL 95

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMP 159
           P  S  S  ELF K    GL S   E  RVR L G   +++RT+Q I G+V ARV +V+P
Sbjct: 96  PKPSYASLGELFQKQ---GLVSTPAE-ERVRYLYGVSQDLSRTLQDIEGVVVARVQVVIP 151

Query: 160 DMGSFRKIGARPTASVMIRAINPSVYKSAEA--IRHLVAAAVPNLDMGDVTVL 210
           +           +A+V IR   P V   A A  ++ LVA ++  L   +V++ 
Sbjct: 152 ENDPLADKIKPSSAAVYIR-YRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSLF 203


>gi|289668187|ref|ZP_06489262.1| HrcJ protein [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 246

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 11/117 (9%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106
           LY  L  +D N +   L  A +D      D+G + +V  P   V  +   L A G+P   
Sbjct: 15  LYSGLTENDANDMLAVLLRAGVDASKVTPDDGKTWAVNAPRDQVAYSLDVLRAHGMPHER 74

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPD 160
             +  E+F K    GL S   E  RVR + G   ++++T+ +I G++AA V IV+P+
Sbjct: 75  HANLGEMFKKD---GLISTPTE-ERVRFIYGVSQQLSQTLSNIDGVIAADVEIVLPN 127


>gi|222082184|ref|YP_002541549.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Agrobacterium radiobacter K84]
 gi|221726863|gb|ACM29952.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Agrobacterium radiobacter K84]
          Length = 274

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 97  LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHI 156
           L+  GLP     +  ELF   + F +T   Q+     A+E ++  T+ ++ G+ +ARVHI
Sbjct: 90  LSDAGLPRLPHRTMAELFPG-DGFLVTPLEQKARMTYAVEQQLGETLSALDGVASARVHI 148

Query: 157 VMPD 160
           V+P+
Sbjct: 149 VLPE 152


>gi|46562142|ref|YP_009157.1| type III secretion lipoprotein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46447679|gb|AAS94345.1| type III secretion lipoprotein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311235505|gb|ADP88358.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Desulfovibrio vulgaris RCH1]
          Length = 271

 Score = 39.7 bits (91), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 66/138 (47%), Gaps = 12/138 (8%)

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG--LTSFMQEITRVR-AL 135
           NG ++SV    V +A   L    LP       Y+   KV S    + S  +E  R+  A+
Sbjct: 65  NGYTLSVERRQVVQALEVLRENSLPREQ----YQSLGKVFSGDGMIASPSEEKARLSYAI 120

Query: 136 EGEIARTIQSISGIVAARVHIVMP--DMGSFRKIGARPTASVMIRAINPS-VYKSAEAIR 192
             E+A T   I G++ AR H+V+   D+G+  +  A  +A+V +R    S V      IR
Sbjct: 121 SQELADTFSRIDGVLTARAHVVLASSDVGTDTRTPA--SAAVFLRHTEDSPVVNLIPKIR 178

Query: 193 HLVAAAVPNLDMGDVTVL 210
            + A AVP LD   V+V+
Sbjct: 179 EMTAKAVPGLDYEKVSVM 196


>gi|304408569|ref|ZP_07390190.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Shewanella baltica OS183]
 gi|307305397|ref|ZP_07585145.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Shewanella baltica BA175]
 gi|304352390|gb|EFM16787.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Shewanella baltica OS183]
 gi|306911700|gb|EFN42125.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Shewanella baltica BA175]
          Length = 239

 Score = 39.7 bits (91), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 2/91 (2%)

Query: 122 LTSFMQEITRVRAL-EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-A 179
           +TS  QE  ++  L E ++ RT+ S+ G+++A V I  P   + R++    +ASV I+ +
Sbjct: 95  VTSPAQEEAKMGYLKEQQLERTLSSMDGVISASVSIAEPAPDTGRQLAQTKSASVYIKYS 154

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
              ++  +   I+ LV  AVP L   +++V 
Sbjct: 155 PQANLTNTENQIKSLVQNAVPGLSYDNISVF 185


>gi|317486819|ref|ZP_07945635.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Bilophila wadsworthia 3_1_6]
 gi|316921982|gb|EFV43252.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Bilophila wadsworthia 3_1_6]
          Length = 269

 Score = 39.7 bits (91), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 1/78 (1%)

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS-VYKSAEAIR 192
           A+  E++ T   I G++ ARVH+V+            P+A+V +R    S V      IR
Sbjct: 119 AISQELSDTFSRIDGVLTARVHVVLGGTDQATDTRTLPSAAVFLRHTPDSPVVNLVAKIR 178

Query: 193 HLVAAAVPNLDMGDVTVL 210
            L + AVP+LD   V+V+
Sbjct: 179 ELTSKAVPDLDYERVSVM 196


>gi|254250200|ref|ZP_04943520.1| Secretory protein YscJ/FliF [Burkholderia cenocepacia PC184]
 gi|124876701|gb|EAY66691.1| Secretory protein YscJ/FliF [Burkholderia cenocepacia PC184]
          Length = 238

 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 82/173 (47%), Gaps = 18/173 (10%)

Query: 51  LYVKLEVSDVNRISVALSEANI------DFR-ISD-NGSSISVPSSMVGKARIHLAAQGL 102
           LY  L   D N++   L +A I      D R  SD N   +SV    +  A   L A GL
Sbjct: 36  LYSGLSERDANQMVAVLGDAGISASKDNDARDTSDRNAWLVSVADGDMQAALTVLQANGL 95

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMP 159
           P  S  S  ELF K    GL S   E  RVR L G   +++RT+Q I G+V ARV +V+P
Sbjct: 96  PKPSYASLGELFQKQ---GLVSTPAE-ERVRYLYGVSQDLSRTLQDIEGVVVARVQVVIP 151

Query: 160 DMGSFRKIGARPTASVMIRAINPSVYKSAEA--IRHLVAAAVPNLDMGDVTVL 210
           +           +A+V IR   P V   A A  ++ LVA ++  L   +V++ 
Sbjct: 152 ENDPLADKIKPSSAAVYIR-YRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSLF 203


>gi|82940561|emb|CAJ44290.1| putative flagellar M-ring protein FliF [Rhizobium leguminosarum bv.
           viciae]
          Length = 78

 Score = 39.3 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 504 SNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
           S +D+ S   +     N  V +  + +L  M+EINEER AKILRKWA
Sbjct: 28  STEDLLSLGDD-DGNFNRRVKEGPERKLSRMVEINEERAAKILRKWA 73


>gi|17549088|ref|NP_522428.1| Hrp conserved lipoprotein HRCJ transmembrane [Ralstonia
           solanacearum GMI1000]
 gi|6066708|emb|CAB58254.1| HrpI protein [Ralstonia solanacearum]
 gi|17431339|emb|CAD18018.1| hrp conserved lipoprotein hrcj transmembrane [Ralstonia
           solanacearum GMI1000]
 gi|1097287|prf||2113360N hrpI gene
          Length = 269

 Score = 39.3 bits (90), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 14/169 (8%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDFRIS--DNGSSISV--PSSMVGKARIHLAAQGLPSS 105
            L+ +L  +D N +   L +A ID + +  D+G + SV        ++   L A GLP  
Sbjct: 30  QLFAQLTEADANDMLTVLLQAGIDAQKTSPDDGKTWSVLVDDDAFARSMEVLHAHGLPRE 89

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMG 162
              +  ++F K    GL S   E  RVR + G   ++++T+  I G+  A V IV+P+  
Sbjct: 90  KYANLGDIFKK---DGLISTPTE-ERVRFIYGVSQQLSQTLSRIDGVAVASVQIVLPNND 145

Query: 163 SFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTV 209
               +    +ASV I+   P+   +A   +I++LV  +V  L   +V V
Sbjct: 146 PLASVVKPSSASVFIK-YRPTANVTALLPSIKNLVVHSVEGLTYENVAV 193


>gi|238764898|ref|ZP_04625838.1| Flagellar M-ring protein [Yersinia kristensenii ATCC 33638]
 gi|238696917|gb|EEP89694.1| Flagellar M-ring protein [Yersinia kristensenii ATCC 33638]
          Length = 572

 Score = 39.3 bits (90), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 4/83 (4%)

Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINK 390
           + ++ +N+E++     T      ++RLS+AVVVN G  T+  G+     K    LA++  
Sbjct: 371 RHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVNYG--TDKAGKPIALSK--EQLAQVES 426

Query: 391 IVSAATGINSRRGDTITITSMDF 413
           +   A G ++ RGDT+ + +  F
Sbjct: 427 LTREAMGFSTDRGDTLNVVNTPF 449


>gi|153832501|ref|ZP_01985168.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio
           harveyi HY01]
 gi|156973996|ref|YP_001444903.1| hypothetical protein VIBHAR_01707 [Vibrio harveyi ATCC BAA-1116]
 gi|148871296|gb|EDL70168.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio
           harveyi HY01]
 gi|156525590|gb|ABU70676.1| hypothetical protein VIBHAR_01707 [Vibrio harveyi ATCC BAA-1116]
          Length = 252

 Score = 39.3 bits (90), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 80/158 (50%), Gaps = 17/158 (10%)

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA-----QGLPSSSSNSGYELFDKV 117
           +S+ LSE  +  +  D  +++ +   MV  A+I  A      +G P    ++  E+F K 
Sbjct: 41  LSILLSEGVVATKEPDKDNTVKL---MVDNAQIAFAVDALKRKGYPREQFSTLKEVFPKD 97

Query: 118 NSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPT---A 173
           +   ++S + E  R + A   E++ T+  I G++ ARVH+V+ D     + G RPT   A
Sbjct: 98  DL--ISSPLAERARLIYAKSQELSSTLSQIDGVLVARVHVVLEDQN--LRPGERPTPASA 153

Query: 174 SVMIR-AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
           SV I+ A + ++      I+ LV  ++  L+   ++V+
Sbjct: 154 SVFIKHAADVALDSYVPQIKLLVNNSIEGLNYDRISVV 191


>gi|218680631|ref|ZP_03528528.1| flagellar MS-ring protein [Rhizobium etli CIAT 894]
          Length = 98

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 504 SNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
           S +D+ S   +     N  V +  + +L  M+EINEER AKILRKWA
Sbjct: 48  STEDLLSLGDD-DGNFNRRVKEGPERKLSRMVEINEERAAKILRKWA 93


>gi|325526929|gb|EGD04393.1| flagellar MS-ring protein [Burkholderia sp. TJI49]
          Length = 185

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           +RLS+AVVVN   + +  G    Q    + LA+I ++V  A G + +RGD++ + +  F
Sbjct: 1   KRLSVAVVVNSQPVADAKGHVTMQPLPPAKLAQIEQLVKDAMGYDEKRGDSVNVVNSAF 59


>gi|188574352|ref|YP_001911281.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188518804|gb|ACD56749.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 246

 Score = 39.3 bits (90), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 11/117 (9%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106
           LY  L  +D N +   L  A +D      D+G + +V  P   V  +   L A GLP   
Sbjct: 15  LYSGLTENDANDMLEVLLHAGVDASKVTPDDGKTWAVNAPHDQVSYSLEALRAHGLPHER 74

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPD 160
             +  E+F K    GL S   E  RVR + G   ++++T+ +I G+++A V IV+P+
Sbjct: 75  HANLGEMFKK---DGLISTPTE-ERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPN 127


>gi|269963158|ref|ZP_06177493.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832122|gb|EEZ86246.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 247

 Score = 39.3 bits (90), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 16/125 (12%)

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA-----QGLPSSSSNSGYELFDKV 117
           +S+ LSE  +  +  D  +++ +   MV  A+I  A      +G P    ++  E+F K 
Sbjct: 36  LSILLSEGVVATKEPDKDNTVKL---MVDNAQIAFAVDALKRKGYPREQFSTLKEVFPKD 92

Query: 118 NSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPT---A 173
           +   ++S + E  R + A   E++ T+  I G++ ARVH+V+ D     + G RPT   A
Sbjct: 93  DL--ISSPLAERARLIYAKSQELSSTLSQIDGVLVARVHVVLEDQN--LRPGERPTPASA 148

Query: 174 SVMIR 178
           SV I+
Sbjct: 149 SVFIK 153


>gi|58579711|ref|YP_198727.1| HrpB3 [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84621745|ref|YP_449117.1| HrcJ protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|7350916|gb|AAF61284.1| HrpB3 [Xanthomonas oryzae pv. oryzae]
 gi|9711586|dbj|BAB07855.1| HrpB3 [Xanthomonas oryzae pv. oryzae]
 gi|24251290|gb|AAN46409.1| HrpB3 [Xanthomonas oryzae pv. oryzae]
 gi|50428349|dbj|BAD29986.1| HrcJ [Xanthomonas oryzae pv. oryzae]
 gi|58424305|gb|AAW73342.1| HrpB3 [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84365685|dbj|BAE66843.1| HrcJ protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 253

 Score = 39.3 bits (90), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 11/117 (9%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106
           LY  L  +D N +   L  A +D      D+G + +V  P   V  +   L A GLP   
Sbjct: 22  LYSGLTENDANDMLEVLLHAGVDASKVTPDDGKTWAVNAPHDQVSYSLEALRAHGLPHER 81

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPD 160
             +  E+F K    GL S   E  RVR + G   ++++T+ +I G+++A V IV+P+
Sbjct: 82  HANLGEMFKK---DGLISTPTE-ERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPN 134


>gi|219566957|dbj|BAH04988.1| Hrp conserved lipoprotein transmembrane protein [Ralstonia
           solanacearum]
          Length = 269

 Score = 39.3 bits (90), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 81/169 (47%), Gaps = 14/169 (8%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDFRIS--DNGSSISVPSSMVGKARIH--LAAQGLPSS 105
            L+ +L  +D N +   L +A ID + +  D+G + SV       AR    L A GLP  
Sbjct: 30  QLFAQLTEADANDMLTVLLQAGIDAQKTSPDDGKTWSVLVDDDAFARSMEVLHAHGLPRE 89

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMG 162
              +  ++F K    GL S   E  RVR + G   ++++T+  I G+  A V IV+P+  
Sbjct: 90  KYANLGDIFKK---DGLISTPTE-ERVRFIYGVSQQLSQTLSRIDGVAVASVQIVLPNND 145

Query: 163 SFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTV 209
               +    +ASV I+   P+   +A   +I++LV  +V  L   +V V
Sbjct: 146 PLASVVKPSSASVFIK-YRPTANVTALLPSIKNLVVHSVEGLTYENVAV 193


>gi|207739223|ref|YP_002257616.1| hrp lipoprotein hrcj [Ralstonia solanacearum IPO1609]
 gi|206592596|emb|CAQ59502.1| hrp conserved lipoprotein hrcj [Ralstonia solanacearum IPO1609]
          Length = 267

 Score = 38.9 bits (89), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 14/169 (8%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIH--LAAQGLPSS 105
            L+ +L   D N +   L +A ID +    D+G + SV       AR    L A GLP  
Sbjct: 28  QLFAQLTEVDANDMLTVLLQAGIDAQKTTPDDGKTWSVLVDDEAFARSMEVLHAHGLPRE 87

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMG 162
              +  ++F K    GL S   E  RVR + G   ++++T+  I G+  A V IV+P+  
Sbjct: 88  KYANLGDIFKK---DGLISTPTE-ERVRFIYGVSQQLSQTLSRIDGVAVANVQIVLPNND 143

Query: 163 SFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTV 209
               +    +ASV I+   P+   +A   +I++LV  +V  L   +V V
Sbjct: 144 PLASVVKPSSASVFIK-YRPTANVTALLPSIKNLVVHSVEGLTYENVAV 191


>gi|207724588|ref|YP_002254985.1| hrp lipoprotein hrcj [Ralstonia solanacearum MolK2]
 gi|206589810|emb|CAQ36771.1| hrp conserved lipoprotein hrcj [Ralstonia solanacearum MolK2]
          Length = 268

 Score = 38.9 bits (89), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 14/169 (8%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIH--LAAQGLPSS 105
            L+ +L   D N +   L +A ID +    D+G + SV       AR    L A GLP  
Sbjct: 29  QLFAQLTEVDANDMLTVLLQAGIDAQKTTPDDGKTWSVLVDDEAFARSMEVLHAHGLPRE 88

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMG 162
              +  ++F K    GL S   E  RVR + G   ++++T+  I G+  A V IV+P+  
Sbjct: 89  KYANLGDIFKK---DGLISTPTE-ERVRFIYGVSQQLSQTLSRIDGVAVANVQIVLPNND 144

Query: 163 SFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTV 209
               +    +ASV I+   P+   +A   +I++LV  +V  L   +V V
Sbjct: 145 PLASVVKPSSASVFIK-YRPTANVTALLPSIKNLVVHSVEGLTYENVAV 192


>gi|83747854|ref|ZP_00944887.1| HrcJ [Ralstonia solanacearum UW551]
 gi|83725501|gb|EAP72646.1| HrcJ [Ralstonia solanacearum UW551]
          Length = 269

 Score = 38.9 bits (89), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 14/169 (8%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIH--LAAQGLPSS 105
            L+ +L   D N +   L +A ID +    D+G + SV       AR    L A GLP  
Sbjct: 30  QLFAQLTEVDANDMLTVLLQAGIDAQKTTPDDGKTWSVLVDDEAFARSMEVLHAHGLPRE 89

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMG 162
              +  ++F K    GL S   E  RVR + G   ++++T+  I G+  A V IV+P+  
Sbjct: 90  KYANLGDIFKK---DGLISTPTE-ERVRFIYGVSQQLSQTLSRIDGVAVANVQIVLPNND 145

Query: 163 SFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTV 209
               +    +ASV I+   P+   +A   +I++LV  +V  L   +V V
Sbjct: 146 PLASVVKPSSASVFIK-YRPTANVTALLPSIKNLVVHSVEGLTYENVAV 193


>gi|134294015|ref|YP_001117751.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Burkholderia vietnamiensis G4]
 gi|134137172|gb|ABO58286.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia vietnamiensis G4]
          Length = 297

 Score = 38.9 bits (89), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 81/173 (46%), Gaps = 18/173 (10%)

Query: 51  LYVKLEVSDVNRISVALSEANI------DFR-ISD-NGSSISVPSSMVGKARIHLAAQGL 102
           LY  L   D N +   L +A I      D R  SD N   +SV    +  A   L A GL
Sbjct: 36  LYSGLSERDANEMVAVLGDAGIGASKDNDARDTSDRNAWQVSVADGDMQSALTVLQANGL 95

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMP 159
           P  S  S  ELF K    GL S   E  RVR L G   +++RT+Q I G+V ARV +V+P
Sbjct: 96  PKPSYASLGELFQKQ---GLVSTPAE-ERVRYLYGVSQDLSRTLQDIEGVVVARVQVVIP 151

Query: 160 DMGSFRKIGARPTASVMIRAINPSVYKSAEA--IRHLVAAAVPNLDMGDVTVL 210
           +           +A+V IR   P V   A A  ++ LVA ++  L   +V++ 
Sbjct: 152 ENDPLADKIKPSSAAVYIR-YRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSLF 203


>gi|21241182|ref|NP_640764.1| HrcJ protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|21106489|gb|AAM35300.1| HrcJ protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 253

 Score = 38.9 bits (89), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 11/117 (9%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR--ISDNGSS--ISVPSSMVGKARIHLAAQGLPSSS 106
           LY  L  +D N +   L  A +D      D+G +  I+ P   V  +   L A GLP   
Sbjct: 23  LYSGLTENDANDMLEVLLHAGVDASKVTPDDGKTWAINAPHDQVSYSLEVLRAHGLPHER 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPD 160
             +  E+F K    GL S   E  RVR + G   ++++T+ +I G+++A V IV+P+
Sbjct: 83  HANLGEMFKKD---GLISTPTE-ERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPN 135


>gi|294665985|ref|ZP_06731248.1| HrcJ protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292604233|gb|EFF47621.1| HrcJ protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 253

 Score = 38.9 bits (89), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 11/117 (9%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106
           LY  L  +D N +   L  A +D      D+G + +V  P   V  +   L A GLP   
Sbjct: 23  LYSGLTENDANDMLEVLLHAGVDASKVTPDDGKTWAVNAPHDQVSYSLEVLRAHGLPHER 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPD 160
             +  E+F K    GL S   E  RVR + G   ++++T+ +I G+++A V IV+P+
Sbjct: 83  HANLGEMFKKD---GLISTPTE-ERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPN 135


>gi|269105034|ref|ZP_06157729.1| type III secretion bridge between inner and outermembrane
           lipoprotein (YscJ,HrcJ,EscJ PscJ) [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268160669|gb|EEZ39167.1| type III secretion bridge between inner and outermembrane
           lipoprotein (YscJ,HrcJ,EscJ PscJ) [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 265

 Score = 38.9 bits (89), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 16/125 (12%)

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA-----QGLPSSSSNSGYELFDKV 117
           +SV LSE  +  +  D  +++ +   MV  A+I  A      +G P    ++  E+F K 
Sbjct: 54  LSVLLSEGVVATKEPDKDNTVKL---MVDNAQIAFAIDALKRKGYPREQFSTLKEVFPKD 110

Query: 118 NSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPT---A 173
           +   ++S + E  R + A   E++ T+  I G++ ARVH+V+ D     + G RPT   A
Sbjct: 111 DL--ISSPLAERARLIYAKSQELSATLSQIDGVLVARVHVVLKDQN--LRPGERPTPASA 166

Query: 174 SVMIR 178
           SV I+
Sbjct: 167 SVFIK 171


>gi|294625833|ref|ZP_06704449.1| HrcJ protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|159024050|gb|ABW87278.1| HrcJ [Xanthomonas fuscans subsp. fuscans]
 gi|292599861|gb|EFF43982.1| HrcJ protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 253

 Score = 38.9 bits (89), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 11/117 (9%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106
           LY  L  +D N +   L  A +D      D+G + +V  P   V  +   L A GLP   
Sbjct: 23  LYSGLTENDANDMLEVLLHAGVDASKVTPDDGKTWAVNAPHDQVSYSLEVLRAHGLPHER 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPD 160
             +  E+F K    GL S   E  RVR + G   ++++T+ +I G+++A V IV+P+
Sbjct: 83  HANLGEMFKKD---GLISTPTE-ERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPN 135


>gi|30524897|gb|AAP34342.1|AF499777_10 HrcJ [Xanthomonas axonopodis pv. glycines]
          Length = 253

 Score = 38.9 bits (89), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 11/117 (9%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR--ISDNGSS--ISVPSSMVGKARIHLAAQGLPSSS 106
           LY  L  +D N +   L  A +D      D+G +  I+ P   V  +   L A GLP   
Sbjct: 23  LYSGLTENDANDMLEVLLHAGVDASKVTPDDGKTWAINAPHDQVSYSLEVLRAHGLPHER 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPD 160
             +  E+F K    GL S   E  RVR + G   ++++T+ +I G+++A V IV+P+
Sbjct: 83  HANLGEMFKKD---GLISTPTE-ERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPN 135


>gi|300697469|ref|YP_003748130.1| type III secretion system lipoprotein HrcJ [Ralstonia solanacearum
           CFBP2957]
 gi|299074193|emb|CBJ53738.1| Type III secretion system lipoprotein HrcJ [Ralstonia solanacearum
           CFBP2957]
          Length = 269

 Score = 38.5 bits (88), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 14/169 (8%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDFRIS--DNGSSISVPSSMVGKARIH--LAAQGLPSS 105
            L+ +L   D N +   L +A ID + +  D+G + SV       AR    L A GLP  
Sbjct: 30  QLFAQLTEVDANDMLTVLLQAGIDAQKTSPDDGKTWSVLVDDEAFARSMEVLHAHGLPRE 89

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMG 162
              +  ++F K    GL S   E  RVR + G   ++++T+  I G+  A V IV+P+  
Sbjct: 90  KYANLGDIFKK---DGLISTPTE-ERVRFIYGVSQQLSQTLSRIDGVAVANVQIVLPNND 145

Query: 163 SFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTV 209
               +    +ASV I+   P+   +A   +I++LV  +V  L   +V V
Sbjct: 146 PLASVVKPSSASVFIK-YRPTANVTALLPSIKNLVVHSVEGLTYENVAV 193


>gi|78045985|ref|YP_362160.1| HrcJ protein [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|325927680|ref|ZP_08188908.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Xanthomonas perforans 91-118]
 gi|462305|sp|P80152|HRB3_XANEU RecName: Full=Protein hrpB3; Flags: Precursor
 gi|398111|gb|AAA27604.1| hrpB3 [Xanthomonas campestris]
 gi|984880|gb|AAB08458.1| HrpB3 [Xanthomonas euvesicatoria]
 gi|78034415|emb|CAJ22060.1| HrcJ protein [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|325541881|gb|EGD13395.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Xanthomonas perforans 91-118]
          Length = 253

 Score = 38.5 bits (88), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 11/117 (9%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106
           LY  L  +D N +   L  A +D      D+G + +V  P   V  +   L A GLP   
Sbjct: 23  LYSGLTENDANDMLEVLLHAGVDASKVTPDDGKTWAVNAPHDQVSYSLEVLRAHGLPHER 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPD 160
             +  E+F K    GL S   E  RVR + G   ++++T+ +I G+++A V IV+P+
Sbjct: 83  HANLGEMFKKD---GLISTPTE-ERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPN 135


>gi|2905649|gb|AAC03547.1| cytoplasmic linker protein CLIP-170 [Gallus gallus]
          Length = 1099

 Score = 38.5 bits (88), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 83/191 (43%), Gaps = 35/191 (18%)

Query: 265  ELNMDTQQIREIVYDPDSKVERSIRLSKD----AQRSETSQPESAVTVEQNMPHVSDRKV 320
            EL +  +Q+ +I  +     E++++L K+    AQ++E SQ E+  T ++ +  + D+  
Sbjct: 900  ELRLKERQLEQIQLELTKANEKAVQLQKNVEQTAQKAEQSQQETLKTHQEELKKMQDQLT 959

Query: 321  PLPRSLENTDK--KEEQSNYEINTKSIATTHD----NYKL------ERLSIAVVVNKGRL 368
             + + +E +    K+ Q+ YE  T  + T HD     +K       E L  A   N    
Sbjct: 960  DMKKQMETSQNQYKDLQAKYEKETSEMITKHDADIKGFKQNLLDAEEALKAAQKKNDELE 1019

Query: 369  T--EVLGRSADQGKIDSYLAEI----------------NKIVSAATGINSRRGDTITITS 410
            T  E L + A+Q K D    E+                 KI + A+  NSR+ +      
Sbjct: 1020 TQAEELKKQAEQAKADKRAEEVLQTMEKVTKEKDAIHQEKIETLASLENSRQTNEKLQNE 1079

Query: 411  MDFL-ENQLFN 420
            +D L +N L N
Sbjct: 1080 LDMLKQNNLKN 1090


>gi|269302618|gb|ACZ32718.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Chlamydophila pneumoniae LPCoLN]
          Length = 335

 Score = 38.5 bits (88), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 71/136 (52%), Gaps = 17/136 (12%)

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT-SFMQEITRVRALEG---E 138
           I+VPS+ + +A   L   GLP     S  +LF K    GL  S +QE  ++R  EG   +
Sbjct: 72  IAVPSAQITEALAILNQAGLPRMKGTSLLDLFAKQ---GLVPSELQE--KIRYQEGLSEQ 126

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI--RAI--NPSVYKSAEAIRHL 194
           +A TI+ + GIV A V I      +  +     TASV I  R +  NP+    ++ I+ L
Sbjct: 127 MASTIRKMDGIVDASVQI---SFTTENEDNLPLTASVYIKHRGVLDNPNSIMVSK-IKRL 182

Query: 195 VAAAVPNLDMGDVTVL 210
           +A+AVP L   +V+V+
Sbjct: 183 IASAVPGLVPENVSVV 198


>gi|115358974|ref|YP_776112.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Burkholderia ambifaria AMMD]
 gi|115284262|gb|ABI89778.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia ambifaria AMMD]
          Length = 309

 Score = 38.5 bits (88), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 82/173 (47%), Gaps = 18/173 (10%)

Query: 51  LYVKLEVSDVNRISVALSEANI------DFR-ISD-NGSSISVPSSMVGKARIHLAAQGL 102
           LY  L   D N++   L +A I      D R  SD N   +SV    +  A   L A GL
Sbjct: 50  LYSGLSERDANQMVAVLGDAGISASKDNDARDTSDRNAWLVSVADGDMQSALTVLQANGL 109

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMP 159
           P  S  S  ELF K    GL S   E  RVR L G   +++RT+Q I G+V ARV +V+P
Sbjct: 110 PKPSYASLGELFQKQ---GLVSTPAE-ERVRYLYGVSQDLSRTLQDIEGVVVARVQVVIP 165

Query: 160 DMGSFRKIGARPTASVMIRAINPSVYKSAEA--IRHLVAAAVPNLDMGDVTVL 210
           +           +A+V IR   P V   A A  ++ LVA ++  L   +V++ 
Sbjct: 166 ENDPLADKIKPSSAAVYIR-YRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSLF 217


>gi|124382226|ref|YP_001025747.1| type III secretion inner membrane protein SctJ [Burkholderia mallei
           NCTC 10229]
          Length = 174

 Score = 38.5 bits (88), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 4/83 (4%)

Query: 131 RVRALEG---EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-INPSVYK 186
           RVR + G   E++ T+  I G+V ARVHIV+P+     ++    +ASV I+   N ++  
Sbjct: 8   RVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPLAQVAKPSSASVFIKYRPNANLAT 67

Query: 187 SAEAIRHLVAAAVPNLDMGDVTV 209
               I++LV  +V  L   +V+V
Sbjct: 68  LTPQIKNLVVHSVEGLTYDEVSV 90


>gi|167589321|ref|ZP_02381709.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia ubonensis Bu]
          Length = 264

 Score = 38.1 bits (87), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 83/175 (47%), Gaps = 20/175 (11%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDFR-------ISD-NGSSISVPSSMVGKARIHLAAQG 101
            LY  L  +D N++   L +A ID          SD +   +SV    +  A   L A G
Sbjct: 35  ELYSGLSEADANQMIAVLGDAGIDASKDNDARDTSDRDAWQVSVADGDLHAALTVLRANG 94

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVM 158
           LP     S  ELF K    GL S   E  RVR L G   +++RT+Q I G+V ARV +V+
Sbjct: 95  LPKPRHASLGELFQKQ---GLVSTPAE-ERVRYLYGVSQDLSRTLQDIEGVVVARVQVVI 150

Query: 159 PDMGSFR-KIGARPTASVMIRAINPSVYKSAEA--IRHLVAAAVPNLDMGDVTVL 210
           P+      KI  RP+++ +     P V   A A  ++ LVA ++  L   +V++ 
Sbjct: 151 PENDPLADKI--RPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSLF 203


>gi|45384404|ref|NP_990273.1| CAP-Gly domain-containing linker protein 1 [Gallus gallus]
 gi|3024541|sp|O42184|CLIP1_CHICK RecName: Full=CAP-Gly domain-containing linker protein 1; AltName:
            Full=Cytoplasmic linker protein 170; Short=CLIP-170;
            AltName: Full=Restin
 gi|2338714|gb|AAC60344.1| restin [Gallus gallus]
          Length = 1433

 Score = 38.1 bits (87), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 74/164 (45%), Gaps = 22/164 (13%)

Query: 265  ELNMDTQQIREIVYDPDSKVERSIRLSKD----AQRSETSQPESAVTVEQNMPHVSDRKV 320
            EL +  +Q+ +I  +     E++++L K+    AQ++E SQ E+  T ++ +  + D+  
Sbjct: 934  ELRLKERQLEQIQLELTKANEKAVQLQKNVEQTAQKAEQSQQETLKTHQEELKKMQDQLT 993

Query: 321  PLPRSLENTDK--KEEQSNYEINTKSIATTHD----NYKL------ERLSIAVVVNKGRL 368
             + + +E +    K+ Q+ YE  T  + T HD     +K       E L  A   N    
Sbjct: 994  DMKKQMETSQNQYKDLQAKYEKETSEMITKHDADIKGFKQNLLDAEEALKAAQKKNDELE 1053

Query: 369  T--EVLGRSADQGKIDSYLAEI----NKIVSAATGINSRRGDTI 406
            T  E L + A+Q K D    E+     K+      I+  + +T+
Sbjct: 1054 TQAEELKKQAEQAKADKRAEEVLQTMEKVTKEKDAIHQEKIETL 1097


>gi|207110812|ref|ZP_03244974.1| flagellar MS-ring protein [Helicobacter pylori HPKX_438_CA4C1]
          Length = 82

 Score = 38.1 bits (87), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 4/73 (5%)

Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE---AIRHLVAAAVPNL 202
           ++ I+ A VHI +P    F      P+ASVM++ + P +  S      I++L+AAAVP L
Sbjct: 1   LNPILKANVHIAIPKDSVFVAKEVPPSASVMLK-LKPDMKLSPTQILGIKNLIAAAVPKL 59

Query: 203 DMGDVTVLDSTGK 215
              +V +++  G+
Sbjct: 60  TTENVKIVNENGE 72


>gi|15618737|ref|NP_225023.1| Yop proteins translocation lipoprotein J [Chlamydophila pneumoniae
           CWL029]
 gi|15836361|ref|NP_300885.1| Yop translocation J [Chlamydophila pneumoniae J138]
 gi|16752212|ref|NP_445580.1| type III secretion protein SctJ [Chlamydophila pneumoniae AR39]
 gi|33242188|ref|NP_877129.1| secretion protein [Chlamydophila pneumoniae TW-183]
 gi|4377140|gb|AAD18965.1| Yop proteins translocation lipoprotein J [Chlamydophila pneumoniae
           CWL029]
 gi|6672018|dbj|BAA88646.1| Yop translocation J [Chlamydophila pneumoniae]
 gi|7189957|gb|AAF38818.1| type III secretion protein SctJ [Chlamydophila pneumoniae AR39]
 gi|8979202|dbj|BAA99036.1| Yop translocation J [Chlamydophila pneumoniae J138]
 gi|33236699|gb|AAP98786.1| secretion protein [Chlamydophila pneumoniae TW-183]
          Length = 335

 Score = 38.1 bits (87), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 71/136 (52%), Gaps = 17/136 (12%)

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT-SFMQEITRVRALEG---E 138
           I+VPS+ + +A   L   GLP     S  +LF K    GL  S +QE  ++R  EG   +
Sbjct: 72  IAVPSAQITEALAILNQAGLPRMKGTSLLDLFAKQ---GLVPSELQE--KIRYQEGLSEQ 126

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI--RAI--NPSVYKSAEAIRHL 194
           +A TI+ + G+V A V I      +  +     TASV I  R +  NP+    ++ I+ L
Sbjct: 127 MASTIRKMDGVVDASVQI---SFTTENEDNLPLTASVYIKHRGVLDNPNSIMVSK-IKRL 182

Query: 195 VAAAVPNLDMGDVTVL 210
           +A+AVP L   +V+V+
Sbjct: 183 IASAVPGLVPENVSVV 198


>gi|168334544|ref|ZP_02692700.1| flagellar M-ring protein FliF [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 459

 Score = 38.1 bits (87), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 6/141 (4%)

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV-NSFGLTSFMQEITRVRALEG 137
           +G +I V    +  A+I L  + +P       Y  +D + NS   T   +    +   + 
Sbjct: 6   DGRTIQVNEEDLNTAKIILTRENVPRGD----YTFYDAITNSMSTTEAEKRTKLIYLKQV 61

Query: 138 EIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVA 196
           ++   +  + GI  A V + +P+   SF       +ASV++           E I  L++
Sbjct: 62  DLENILMGMEGIAEATVQLNVPEEKNSFIASQMESSASVVLTLHRQISDNQIEGIARLLS 121

Query: 197 AAVPNLDMGDVTVLDSTGKLL 217
            AV NL + ++T+LDS   +L
Sbjct: 122 NAVDNLKLENITILDSDSNVL 142


>gi|299069234|emb|CBJ40494.1| Type III secretion system lipoprotein HrcJ [Ralstonia solanacearum
           CMR15]
          Length = 269

 Score = 37.7 bits (86), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 14/169 (8%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDFRIS--DNGSSISV--PSSMVGKARIHLAAQGLPSS 105
            L+ +L  +D N +   L +A ID + +  D+G + SV        ++   L   GLP  
Sbjct: 30  QLFAQLTEADANDMLTVLLQAGIDAQKTSPDDGKTWSVLVDDDAFARSMEVLHGHGLPRE 89

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMG 162
              +  ++F K    GL S   E  RVR + G   ++++T+  I G+  A V IV+P+  
Sbjct: 90  KYANLGDIFKK---DGLISTPTE-ERVRFIYGVSQQLSQTLSRIDGVAVASVQIVLPNND 145

Query: 163 SFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTV 209
               +    +ASV I+   P+   +A   +I++LV  +V  L   +V V
Sbjct: 146 PLASVVKPSSASVFIK-YRPTANVTALLPSIKNLVVHSVEGLTYENVAV 193


>gi|107025872|ref|YP_623383.1| Type III secretion system lipoprotein HrcJ/YscJ [Burkholderia
           cenocepacia AU 1054]
 gi|116692944|ref|YP_838477.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Burkholderia cenocepacia HI2424]
 gi|105895246|gb|ABF78410.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia cenocepacia AU 1054]
 gi|116650944|gb|ABK11584.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia cenocepacia HI2424]
          Length = 292

 Score = 37.7 bits (86), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 82/173 (47%), Gaps = 18/173 (10%)

Query: 51  LYVKLEVSDVNRISVALSEANI------DFR-ISD-NGSSISVPSSMVGKARIHLAAQGL 102
           LY  L   D N++   L +A I      D R  SD N   +SV    +  A   L A GL
Sbjct: 36  LYSGLSERDANQMVAVLGDAGISASKDNDARDTSDRNAWLVSVADGDMQAALTVLQANGL 95

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMP 159
           P  S  S  ELF K    GL S   E  RVR L G   +++RT+Q I G+V ARV +V+P
Sbjct: 96  PKPSYASLGELFQKQ---GLVSTPAE-ERVRYLYGVSQDLSRTLQDIEGVVVARVQVVIP 151

Query: 160 DMGSFRKIGARPTASVMIRAINPSVYKSAEA--IRHLVAAAVPNLDMGDVTVL 210
           +           +A+V IR   P V   A A  ++ LVA ++  L   +V++ 
Sbjct: 152 ENDPLADKIKPSSAAVYIR-YRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSLF 203


>gi|163802017|ref|ZP_02195913.1| putative type III secretion lipoprotein [Vibrio sp. AND4]
 gi|159174158|gb|EDP58966.1| putative type III secretion lipoprotein [Vibrio sp. AND4]
          Length = 247

 Score = 37.7 bits (86), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 69/138 (50%), Gaps = 17/138 (12%)

Query: 51  LYVKLEVSDVNR-ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA-----QGLPS 104
           LY  ++  + N  +S+ LSE  +  +  D  +++ +   +V  A+I  A       G P 
Sbjct: 23  LYTGVDQQEGNEMLSILLSEGVVATKEPDKDNTVKL---LVDNAQIAFAVDALKRNGYPK 79

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
              ++  E+F K +   ++S + E  R + A   E++ T+  I G++ ARVH+V+ D   
Sbjct: 80  EQFSTLKEVFPKDDL--ISSPLAERARLIYAKSQELSSTLSQIDGVLVARVHVVLEDQN- 136

Query: 164 FRKIGARPT---ASVMIR 178
             + G RPT   ASV I+
Sbjct: 137 -LRPGERPTPASASVFIK 153


>gi|300693814|ref|YP_003749787.1| type III secretion system lipoprotein hrcj [Ralstonia solanacearum
           PSI07]
 gi|299075851|emb|CBJ35160.1| Type III secretion system lipoprotein HrcJ [Ralstonia solanacearum
           PSI07]
          Length = 269

 Score = 37.7 bits (86), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 80/169 (47%), Gaps = 14/169 (8%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDFRIS--DNGSSISVPSSMVGKARIH--LAAQGLPSS 105
            L+ +L  +D N +   L +A +D + +  D+G + SV       AR    L A GLP  
Sbjct: 30  QLFAQLTEADANDMLTVLLQAGVDAQKTSPDDGKTWSVLVDDDAFARSMEVLHAHGLPRE 89

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMPDMG 162
              +  ++F K    GL S   E  RVR + G   ++++T+  I G+  A V IV+P+  
Sbjct: 90  KYANLGDIFKK---DGLISTPTE-ERVRFIYGVSQQLSQTLSRIDGVAVASVQIVLPNND 145

Query: 163 SFRKIGARPTASVMIRAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTV 209
               +    +ASV I+   P+  V     +I++LV  +V  L   +V V
Sbjct: 146 PLASVVKPSSASVFIK-YRPTANVTSLLPSIKNLVVHSVEGLTYENVAV 193


>gi|182441001|dbj|BAG24126.1| HrcJ [Pseudomonas cichorii]
          Length = 263

 Score = 37.7 bits (86), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 83/162 (51%), Gaps = 8/162 (4%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
            L+  L   D N +   L+  NID   R+   G ++ V +  + +A   L A GLP  S 
Sbjct: 26  ELHRDLTEQDANEVLAELAGKNIDAQKRLDKGGVAVLVSTQDISRAVKVLEAVGLPRRSR 85

Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
           ++  E+F K     ++S M+E  R + AL  E+ +T+  I G+V ARVH+V+P+  +  +
Sbjct: 86  STLGEVFRKEGV--ISSPMEERARYIYALSQELEQTLSQIDGVVVARVHVVLPERIAPGE 143

Query: 167 IGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGD 206
                +A+V I+   P +   +    IR +VA+++P +   D
Sbjct: 144 PVQPASAAVFIK-YRPDLEPDSVLPRIRRMVASSIPGMANAD 184


>gi|170737791|ref|YP_001779051.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Burkholderia cenocepacia MC0-3]
 gi|169819979|gb|ACA94561.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia cenocepacia MC0-3]
          Length = 295

 Score = 37.4 bits (85), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 82/173 (47%), Gaps = 18/173 (10%)

Query: 51  LYVKLEVSDVNRISVALSEANI------DFR-ISD-NGSSISVPSSMVGKARIHLAAQGL 102
           LY  L   D N++   L +A I      D R  SD N   +SV    +  A   L A GL
Sbjct: 36  LYSGLSERDANQMVAVLGDAGISASKDNDARDTSDRNAWLVSVADGDMQAALTVLQANGL 95

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMP 159
           P  S  S  ELF K    GL S   E  RVR L G   +++RT+Q I G+V ARV +V+P
Sbjct: 96  PKPSYASLGELFQKQ---GLVSTPAE-ERVRYLYGVSQDLSRTLQDIEGVVVARVQVVIP 151

Query: 160 DMGSFRKIGARPTASVMIRAINPSVYKSAEA--IRHLVAAAVPNLDMGDVTVL 210
           +           +A+V IR   P V   A A  ++ LVA ++  L   +V++ 
Sbjct: 152 ENDPLADKIKPSSAAVYIR-YRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSLF 203


>gi|206563892|ref|YP_002234655.1| type III secretion system protein [Burkholderia cenocepacia J2315]
 gi|18092671|gb|AAL59400.1| BcscJ [Burkholderia cenocepacia]
 gi|28394252|gb|AAO31727.1| BcscJ [Burkholderia cenocepacia]
 gi|198039932|emb|CAR55910.1| type III secretion system protein [Burkholderia cenocepacia J2315]
          Length = 294

 Score = 37.4 bits (85), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 82/173 (47%), Gaps = 18/173 (10%)

Query: 51  LYVKLEVSDVNRISVALSEANI------DFR-ISD-NGSSISVPSSMVGKARIHLAAQGL 102
           LY  L   D N++   L +A I      D R  SD N   +SV    +  A   L A GL
Sbjct: 36  LYSGLSERDANQMVAVLGDAGISASKDNDARDTSDRNAWLVSVADGDMQAALTVLQANGL 95

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMP 159
           P  S  S  ELF K    GL S   E  RVR L G   +++RT+Q I G+V ARV +V+P
Sbjct: 96  PKPSYASLGELFQKQ---GLVSTPAE-ERVRYLYGVSQDLSRTLQDIEGVVVARVQVVIP 151

Query: 160 DMGSFRKIGARPTASVMIRAINPSVYKSAEA--IRHLVAAAVPNLDMGDVTVL 210
           +           +A+V IR   P V   A A  ++ LVA ++  L   +V++ 
Sbjct: 152 ENDPLADKIKPSSAAVYIR-YRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSLF 203


>gi|172063766|ref|YP_001811417.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Burkholderia ambifaria MC40-6]
 gi|171996283|gb|ACB67201.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia ambifaria MC40-6]
          Length = 295

 Score = 37.4 bits (85), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 81/173 (46%), Gaps = 18/173 (10%)

Query: 51  LYVKLEVSDVNRISVALSEANI------DFR-ISD-NGSSISVPSSMVGKARIHLAAQGL 102
           LY  L   D N++   L  A I      D R  SD N   +SV    +  A   L A GL
Sbjct: 36  LYSGLSERDANQMVAVLGAAGISASKDNDARDTSDRNAWLVSVADGDMQSALTVLQANGL 95

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG---EIARTIQSISGIVAARVHIVMP 159
           P  S  S  ELF K    GL S   E  RVR L G   +++RT+Q I G+V ARV +V+P
Sbjct: 96  PKPSYASLGELFQKQ---GLVSTPAE-ERVRYLYGVSQDLSRTLQDIEGVVVARVQVVIP 151

Query: 160 DMGSFRKIGARPTASVMIRAINPSVYKSAEA--IRHLVAAAVPNLDMGDVTVL 210
           +           +A+V IR   P V   A A  ++ LVA ++  L   +V++ 
Sbjct: 152 ENDPLADKIKPSSAAVYIR-YRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSLF 203


>gi|76574834|gb|ABA47308.1| HrcJ [Pseudomonas cichorii]
          Length = 263

 Score = 37.0 bits (84), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 82/161 (50%), Gaps = 6/161 (3%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
            L+  L   D N +   L+  NID   R+   G ++ V +  + +A   L A GLP  S 
Sbjct: 26  ELHRDLTEQDANEVLAELAGKNIDAQKRLDKGGVAVLVSTQDISRAVRVLEAVGLPRRSR 85

Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
           ++  E+F K     ++S M+E  R + AL  E+ +T+  I G+V ARVH+V+P+  +  +
Sbjct: 86  STLGEVFRKEGV--ISSPMEERARYIYALSQELEQTLSQIDGVVVARVHVVLPERIAPGE 143

Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGD 206
                +A+V I+  N     S    IR +VA+++P +   D
Sbjct: 144 PVQPASAAVFIKYRNDLEPDSILPRIRRMVASSIPGMANAD 184


>gi|291562020|emb|CBL40835.1| Flagellar biosynthesis/type III secretory pathway lipoprotein
           [butyrate-producing bacterium SS3/4]
          Length = 110

 Score = 37.0 bits (84), Expect = 8.0,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 6/90 (6%)

Query: 18  GRTRILILASVILVPIMLFMAARFFV----NSPHYDNLYVKLEVSDVNRISVALSEANID 73
           G+T+ +I  +VI    ++  AA   V        Y  L+  +   D   +   L +  +D
Sbjct: 17  GKTKKMI--AVIAAGTIILAAAGLLVLNIGTKKGYSTLFTGMSSDDAQAVVSLLQDEGVD 74

Query: 74  FRISDNGSSISVPSSMVGKARIHLAAQGLP 103
           +R +D   S+ V S  V K R  L ++G P
Sbjct: 75  YRYNDKNGSVQVMSDTVDKTRAELLSKGYP 104


>gi|46398281|gb|AAS91835.1| AscJ [Aeromonas hydrophila]
          Length = 246

 Score = 37.0 bits (84), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 8/105 (7%)

Query: 78  DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR---A 134
           D    + V  S V +A   L  +G P  S ++  ++F K    GL S   E  R R   A
Sbjct: 53  DGNIKLLVEESDVAQAIETLKRKGYPRESFSTLQDVFPK---DGLISSPTE-ERARLTYA 108

Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMG-SFRKIGARPTASVMIR 178
              EI+ T+  I G++ ARVH+V+P+    F K  +  +ASV I+
Sbjct: 109 KAQEISNTLSEIDGVLVARVHVVLPEGNEGFNKKTSPASASVFIK 153


>gi|308126335|ref|ZP_07663715.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio
           parahaemolyticus AQ4037]
 gi|308110706|gb|EFO48246.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio
           parahaemolyticus AQ4037]
          Length = 190

 Score = 37.0 bits (84), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 9/131 (6%)

Query: 85  VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTI 143
           V SS +  A   L  +G P    ++  E+F K +   ++S + E  R V A   E++ T+
Sbjct: 3   VDSSQIAFAVDALKRKGYPREQFSTLKEVFPKDDL--ISSPLAERARLVYAKSQELSSTL 60

Query: 144 QSISGIVAARVHIVMPDMGSFRKIGARPT---ASVMIR-AINPSVYKSAEAIRHLVAAAV 199
             I G++ ARVH+V+ D     + G RPT   ASV I+ A + ++      I+ LV  ++
Sbjct: 61  SQIDGVLVARVHVVLEDQD--LRPGERPTPASASVFIKHAADVALDSYVPQIKLLVNNSI 118

Query: 200 PNLDMGDVTVL 210
             L+   ++V+
Sbjct: 119 EGLNYDRISVV 129


>gi|297206189|ref|ZP_06923584.1| methionyl-tRNA formyltransferase [Lactobacillus jensenii JV-V16]
 gi|297149315|gb|EFH29613.1| methionyl-tRNA formyltransferase [Lactobacillus jensenii JV-V16]
          Length = 329

 Score = 37.0 bits (84), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 10/90 (11%)

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           ++  E  +N     FLG  NF + V+  L  D  Q+  +V  PD KV R  +L       
Sbjct: 7   EYHNERGMNMTSVIFLGTPNFGATVLEGLIKDNYQVLAVVTQPDKKVGRKQKL------- 59

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLE 327
            TS P   +  + ++P     +  LPRS E
Sbjct: 60  -TSSPVKEMAQKYDLPVYQPAR--LPRSEE 86


Searching..................................................done


Results from round 2




>gi|254780695|ref|YP_003065108.1| flagellar MS-ring protein [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040372|gb|ACT57168.1| flagellar MS-ring protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 563

 Score =  675 bits (1743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 563/563 (100%), Positives = 563/563 (100%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV
Sbjct: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF
Sbjct: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI
Sbjct: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240
           NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE
Sbjct: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS
Sbjct: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA
Sbjct: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN
Sbjct: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
           SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL
Sbjct: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
           SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE
Sbjct: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540

Query: 541 RFAKILRKWARSEIEDRYTQHIS 563
           RFAKILRKWARSEIEDRYTQHIS
Sbjct: 541 RFAKILRKWARSEIEDRYTQHIS 563


>gi|315121860|ref|YP_004062349.1| flagellar MS-ring protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495262|gb|ADR51861.1| flagellar MS-ring protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 560

 Score =  580 bits (1494), Expect = e-163,   Method: Composition-based stats.
 Identities = 420/560 (75%), Positives = 480/560 (85%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           MAI+DQLLQFFKS  SLGR R+ I+ +V+   I L +AA FF++SP YD+LYVKLE SDV
Sbjct: 1   MAIIDQLLQFFKSAMSLGRMRLFIVGAVMFASIALLLAASFFMSSPIYDSLYVKLEASDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           N+ISVALSEA+IDFRI+ NGSSI VPS ++ KAR+ LA QGLP+SS+NSGYELFDKVNSF
Sbjct: 61  NKISVALSEASIDFRIAGNGSSILVPSHLLSKARLRLAEQGLPNSSNNSGYELFDKVNSF 120

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQEITRVRALEGEI+RTIQ ISGIVAARVHIVMPDMGSFR+IGA+PTASVM+R +
Sbjct: 121 GLTSFMQEITRVRALEGEISRTIQDISGIVAARVHIVMPDMGSFRRIGAKPTASVMVRVV 180

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240
           NPSVYKSAEAIRHLVAAAVP LD+ DVTVLDSTGKLL ANE+ERNI GKSL IVQA+QHE
Sbjct: 181 NPSVYKSAEAIRHLVAAAVPGLDISDVTVLDSTGKLLVANEIERNIFGKSLGIVQAVQHE 240

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           IEMNINKALA FLG+DNFRSAV+AELN D QQI+EIVYDPDS+VERS+RLSKD QRSE+ 
Sbjct: 241 IEMNINKALAPFLGIDNFRSAVIAELNTDIQQIKEIVYDPDSRVERSVRLSKDVQRSESH 300

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           Q ESAVTVEQNMPHVS++    PR+LENTDKKEEQSNYEINTKSI+TTH+NYKLERLSIA
Sbjct: 301 QQESAVTVEQNMPHVSEKNATSPRALENTDKKEEQSNYEINTKSISTTHNNYKLERLSIA 360

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           VVVNKGRL E+LG S +Q K+DSYLAEIN+IVSAATGINS RGD ITITSMDFL++QL N
Sbjct: 361 VVVNKGRLMEMLGPSMEQSKVDSYLAEINRIVSAATGINSIRGDNITITSMDFLDDQLLN 420

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
           S TVQVSFMDILSR+F+ +INAL FL   LL+   G+H LR  +NID  K+ E+  KS L
Sbjct: 421 SSTVQVSFMDILSRNFSIIINALFFLTLVLLMALFGVHVLRGFNNIDLIKRKEMEAKSAL 480

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
           S P I+S   T LM +D++A DS  QDI S + N QS IN+YV++QSD RLL MIEINEE
Sbjct: 481 STPSIASTAETTLMSSDDMASDSFRQDILSRNNNFQSDINNYVAEQSDRRLLRMIEINEE 540

Query: 541 RFAKILRKWARSEIEDRYTQ 560
           RF+KI+RKW RSEIE RYTQ
Sbjct: 541 RFSKIIRKWVRSEIESRYTQ 560


>gi|241203091|ref|YP_002974187.1| flagellar MS-ring protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240856981|gb|ACS54648.1| flagellar M-ring protein FliF [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 563

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 295/564 (52%), Positives = 395/564 (70%), Gaps = 10/564 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M +L+QL+Q FK+  SLGRTR++IL  V  V I + +AA  FVN P  + LYV L+  D+
Sbjct: 1   MNLLNQLVQIFKNFGSLGRTRLMILGGVGAVSIAIVLAAALFVNKPAQETLYVGLDSPDL 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           N+IS+AL+EANI+F++  +G+SISVP+ M GKAR+ LA +GLP +S+N+GYELFD V S 
Sbjct: 61  NQISMALAEANINFQVGTDGTSISVPAGMTGKARLMLAERGLP-NSANAGYELFDNVGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEIARTIQSISGI AARVHIVMP++G+FRK   +PTASVMIRA 
Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQSISGITAARVHIVMPEVGNFRKAEQKPTASVMIRAS 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239
             +   +A +IRHLVA+AVP LD+ DVT+LDS G+LL + +E   + L +SL+IVQ +Q 
Sbjct: 180 ATTGRSAATSIRHLVASAVPGLDVDDVTILDSAGQLLASGDEASNSSLNRSLNIVQNVQQ 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           E+E NI+KALA FLG+DNFRS+V A+LN D QQI+E  YDP+SKVERS+R +K+AQ+S+ 
Sbjct: 240 EVESNIDKALAPFLGMDNFRSSVTADLNTDAQQIQETTYDPESKVERSVRSTKEAQQSQQ 299

Query: 300 SQPESAVTVEQNMPHVSDRKVP--LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
            Q +SA TVEQN+P  +        P S + +DK+EEQ+NYEIN+K+ ATT  +YK+E+L
Sbjct: 300 KQSDSATTVEQNIPQAAPEAGGSAGPESQDKSDKREEQTNYEINSKTTATTRSSYKVEKL 359

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           SIAVVVNKGR+ +++G  ADQ K+D+YLAE+ KIV++A GI+++RGD +T+T+MDFLENQ
Sbjct: 360 SIAVVVNKGRIAKMVGEPADQTKVDAYLAEMQKIVASAAGIDAKRGDVVTVTAMDFLENQ 419

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG----- 472
           L    T  V  MD+LSR+ A +IN+L F+    LV ++GL  L R  + + +        
Sbjct: 420 LLEDATGGVRVMDMLSRNLAGIINSLAFVAVAFLVVWMGLRPLVRSVSGNGSSAAFGDAT 479

Query: 473 -EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
            E  G  +    P S A    LM          + +      +     N  V +  + +L
Sbjct: 480 PEAAGLELPDFAPASGAPGGALMDGFGSDFGFDSTEDLLSLGDDDGNFNRRVKEGPERKL 539

Query: 532 LHMIEINEERFAKILRKWARSEIE 555
             M+EINEER AKILRKWA  E  
Sbjct: 540 SRMVEINEERAAKILRKWAIDEAA 563


>gi|116250467|ref|YP_766305.1| flagellar MS-ring protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255115|emb|CAK06189.1| putative flagellar M-ring protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 561

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 297/562 (52%), Positives = 395/562 (70%), Gaps = 8/562 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M +L+QL+Q FK+  SLGRTR++IL  V  + I + +AA  FVN P  + LYV L+  D+
Sbjct: 1   MNLLNQLVQIFKNFGSLGRTRLMILGGVGALSIAIILAAALFVNKPAQETLYVGLDSPDL 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           N+IS+AL+EANI+F++  +GSSISVP+ M GKAR+ LA +GLP +S+N+GYELFD V S 
Sbjct: 61  NQISMALAEANINFQVGTDGSSISVPAGMTGKARLMLAERGLP-NSANAGYELFDNVGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEIARTIQSISGI AARVHIVMP++G+FRK   +PTASVMIRA 
Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQSISGITAARVHIVMPEVGNFRKAEQKPTASVMIRAS 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239
             +   +A +IRHLVA+AVP LD+ DVT+LDS G+LL + +E   + L +SL+IVQ +Q 
Sbjct: 180 ATTGRSAATSIRHLVASAVPGLDVDDVTILDSAGQLLASGDEASNSSLNRSLNIVQNVQQ 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           E+E NI+KALA FLG+DNFRS+V A+LN D QQI+E  YDP+SKVERS+R +K+AQ+S+ 
Sbjct: 240 EVESNIDKALAPFLGMDNFRSSVTADLNTDAQQIQETTYDPESKVERSVRSTKEAQQSQQ 299

Query: 300 SQPESAVTVEQNMPHVSDRKVP--LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
            Q +SA TVEQN+P  +        P S + +DK+EEQ+NYEIN+K+ ATT  +YK+E+L
Sbjct: 300 KQSDSATTVEQNIPQAAPEAGGSAGPESQDKSDKREEQTNYEINSKTTATTRSSYKVEKL 359

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           SIAVVVNKGR+ +++G  ADQ K+D+YLAE+ KIV++A GI+++RGD +T+T+MDFLENQ
Sbjct: 360 SIAVVVNKGRIAKMVGEPADQAKVDAYLAEMQKIVASAAGIDAKRGDVVTVTAMDFLENQ 419

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG----E 473
           L    T  V  MD+LSR+ A +IN+L F+    +V ++GL  L R  N   A  G    E
Sbjct: 420 LLEDATGGVRVMDMLSRNLAGIINSLAFVAVAFVVVWMGLRPLVRSINGTSAAFGDATPE 479

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
             G  +    P S A    LM          + +      +     N  V +  + +L  
Sbjct: 480 AAGLELPDFAPASGAPGGALMDGFGSDFGFDSTEDLLSLGDDDGNFNRRVKEGPERKLSR 539

Query: 534 MIEINEERFAKILRKWARSEIE 555
           M+EINEER AKILRKWA  E  
Sbjct: 540 MVEINEERAAKILRKWAIDEAA 561


>gi|15964399|ref|NP_384752.1| flagellar MS-ring protein [Sinorhizobium meliloti 1021]
 gi|307311541|ref|ZP_07591182.1| flagellar M-ring protein FliF [Sinorhizobium meliloti BL225C]
 gi|307318896|ref|ZP_07598327.1| flagellar M-ring protein FliF [Sinorhizobium meliloti AK83]
 gi|17380368|sp|O54239|FLIF_RHIME RecName: Full=Flagellar M-ring protein
 gi|15073576|emb|CAC45218.1| Flagellar M-ring transmembrane protein [Sinorhizobium meliloti
           1021]
 gi|306895310|gb|EFN26065.1| flagellar M-ring protein FliF [Sinorhizobium meliloti AK83]
 gi|306899558|gb|EFN30187.1| flagellar M-ring protein FliF [Sinorhizobium meliloti BL225C]
          Length = 557

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 272/554 (49%), Positives = 366/554 (66%), Gaps = 6/554 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M + DQ   F K+ ++LG+ +++ LA   +V I   + A  +VN P ++ LYV LE SDV
Sbjct: 1   MNLFDQFSTFTKNLSNLGQGKLIALAVAGVVAIGFVLGAGIYVNRPSFETLYVGLERSDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +IS+AL+EAN+DF +  +G SI VP  M GKAR+ LA +GLP SS+N+GYELFD V S 
Sbjct: 61  TQISIALAEANVDFEVGTDGGSIQVPVGMTGKARLLLAERGLP-SSANAGYELFDNVGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEIARTIQ ISGI AARVHIVMP+ GSFRK    PTASVMIRA 
Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQQISGIAAARVHIVMPERGSFRKAEQTPTASVMIRAS 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239
                 +A +IRHLVA++VP LD+ DVTVLDSTG+LL + ++   + L +SL +VQ +Q 
Sbjct: 180 ATVGRSAASSIRHLVASSVPGLDVDDVTVLDSTGQLLASGDDPSNSALNQSLGVVQNVQS 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           ++E  I+ ALA FLG+DNFR++V A LN D QQI+E V+DP+S+VERS R+ K+ Q+S  
Sbjct: 240 DLEKKIDNALAPFLGMDNFRTSVTARLNTDAQQIQETVFDPESRVERSTRVIKEEQKSSQ 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
            QP++A TV+QN+P  + R     +S +  +KKEEQ+NYEIN+K+IAT  ++Y +ERLSI
Sbjct: 300 QQPDNAATVQQNVPQAAPRGGAGQQSSDEAEKKEEQTNYEINSKTIATVKNSYSIERLSI 359

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AVVVN+GRL  + G  ADQ KID+YL E+ KIVS+A GI+  RGD +T+ +MDF+E QL 
Sbjct: 360 AVVVNRGRLAAMAGEPADQAKIDAYLQEMQKIVSSAAGIDPGRGDVVTLNAMDFVETQLL 419

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK---KGEVGG 476
           +        M++L+R+   +INAL F+    LV + G+  L R           +GE  G
Sbjct: 420 DQAVPGPGIMEMLTRNLGGIINALAFVAVAFLVVWFGMRPLARQLGFGGQAGKLEGEAAG 479

Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536
             +    P  +     LM            D   +    ++  N  V +  + RL  M+E
Sbjct: 480 LELPDFSPAGAGAGGALMEGFGSDFGFDGGDDLLNL-GDEAGFNRRVKEGPERRLARMVE 538

Query: 537 INEERFAKILRKWA 550
           I+EER AKILRKWA
Sbjct: 539 ISEERAAKILRKWA 552


>gi|222149996|ref|YP_002550953.1| flagellar MS-ring protein [Agrobacterium vitis S4]
 gi|221736978|gb|ACM37941.1| flagellar M-ring protein [Agrobacterium vitis S4]
          Length = 568

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 280/560 (50%), Positives = 381/560 (68%), Gaps = 9/560 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M + +QLLQ FK+ +SLG T++  LA V +V + L + A FF+N P ++ LYV LE +DV
Sbjct: 7   MNLFNQLLQVFKNLSSLGPTKLWTLAGVGVVSVALVIGAAFFINKPAFETLYVGLEATDV 66

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           N+IS+AL+EA + F+   +G SI V + M GKAR+ LA +GLP +S+N+GYELFD V S 
Sbjct: 67  NQISIALAEAGVGFQTGADGKSIQVQAGMTGKARLLLAERGLP-NSTNAGYELFDNVGSL 125

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEIARTIQ I+GI AARVHIVMPD+G+FR+   +PTASVMIRA 
Sbjct: 126 GLTSFMQEVTRVRALEGEIARTIQQINGIAAARVHIVMPDVGNFRRGAQKPTASVMIRAG 185

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240
           + +  KSA +IRHLVA+AVP L++ DVT+LDSTG+LL + +       ++L + Q++Q E
Sbjct: 186 SDAGRKSAASIRHLVASAVPGLEIDDVTILDSTGQLLASGDETGGAANRNLGVAQSVQQE 245

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           IE NI+KALA FLG+DNFRS+V A+LN D QQI+E VYDP+SKVERS R +K+AQ+S+  
Sbjct: 246 IESNIDKALAPFLGMDNFRSSVTAQLNTDQQQIQETVYDPESKVERSTRTTKEAQKSQQR 305

Query: 301 QPESAVTVEQNMPHVSDRKVP-LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           Q ++A TVEQN+P  + +     P S +  DKKEEQ+NYEIN+K+IAT  + Y L++LS+
Sbjct: 306 QSDTAATVEQNIPQAAPQAGGAGPESSDQQDKKEEQTNYEINSKTIATVKNGYTLDKLSV 365

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AVVVNK R+  ++G   DQ KID+YLAE+ KIV +A G++ +RGD +T+T+MDFLENQL 
Sbjct: 366 AVVVNKQRIATMVGEPVDQAKIDAYLAEMQKIVKSAAGLDDKRGDVVTLTAMDFLENQLL 425

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
           +        M+ILSR+ A +IN+L FL    LV ++G+  + R          E G  ++
Sbjct: 426 SEAPTGPGVMEILSRNMAGIINSLAFLAVAFLVVWMGIRPMVRSMGGGGTAALEGGSDAV 485

Query: 480 LS------PPPISSAVTTGLMPNDNIALD-SSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
                    P + +    GLM          S  D+ +   +     N  V +  + RL 
Sbjct: 486 AGLELPDFSPGLDAGAGGGLMDGFGSDFGFDSADDVLALDNDPNGGFNRRVKEGPERRLA 545

Query: 533 HMIEINEERFAKILRKWARS 552
            M+EI+EER AKILRKWA  
Sbjct: 546 RMVEISEERAAKILRKWAVE 565


>gi|327193018|gb|EGE59930.1| flagellar M-ring protein [Rhizobium etli CNPAF512]
          Length = 563

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 290/564 (51%), Positives = 394/564 (69%), Gaps = 10/564 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M +L+QL+Q FK+  +LGRTR++IL  V  + I + +AA  FVN P  + LYV L+  D+
Sbjct: 1   MNLLNQLVQIFKNFGALGRTRLMILGGVGALSIAIILAAALFVNKPAQETLYVGLDAPDL 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           N+IS+AL+EANI+F++  +G+SISVP+ M GKAR+ LA +GLP +S+N+GYELFD V S 
Sbjct: 61  NQISMALAEANINFQVGTDGASISVPAGMTGKARLMLAERGLP-NSANAGYELFDNVGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEIARTIQSISGI AARVHIVMP++G+FRK   +PTASVMIRA 
Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQSISGITAARVHIVMPEVGNFRKAEQKPTASVMIRAS 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239
             +   +A +IRHLVA+AVP LD+ DVT+LDS G+LL + +E   + L +SL+IVQ +Q 
Sbjct: 180 AATGRSAATSIRHLVASAVPGLDVDDVTILDSAGQLLASGDEASNSSLNRSLNIVQNVQQ 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           E+E NI+KALA FLG+DNFRS+V A+LN D QQI+E  YDP+SKVERS+R +K+AQ+S+ 
Sbjct: 240 EVESNIDKALAPFLGMDNFRSSVTADLNTDAQQIQETTYDPESKVERSVRSTKEAQQSQQ 299

Query: 300 SQPESAVTVEQNMPHVSD--RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
            Q ++A TVEQN+P  +        P S + +DK+EEQ+NYEIN+K+ ATT ++YK+E+L
Sbjct: 300 KQSDNATTVEQNIPQAAPDAGGASGPESQDKSDKREEQTNYEINSKTTATTRNSYKVEKL 359

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           SIAVVVNKGR+ +++G  ADQ K+D+YLAE+ KIV++A GI+++RGD +T+T+MDFLENQ
Sbjct: 360 SIAVVVNKGRIAKMVGEPADQAKVDAYLAEMQKIVASAAGIDAKRGDVVTVTAMDFLENQ 419

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA------KK 471
           L    T  V  MD+LSR+ A +IN+L F+    +V ++GL  L R    + A        
Sbjct: 420 LLEDATGGVRVMDMLSRNLAGIINSLAFVAVAFVVVWMGLRPLVRSVTGNGASAVLGDAT 479

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
            E  G  +    P   A    LM          + +      +     N  V +  + +L
Sbjct: 480 PEAAGLELPDFAPAVGAPGGALMDGFGSDFGFDSTEDLLSLGDDDGNFNRRVKEGPERKL 539

Query: 532 LHMIEINEERFAKILRKWARSEIE 555
             M+EINEER AKILRKWA  +  
Sbjct: 540 ARMVEINEERAAKILRKWAIDDAA 563


>gi|190890348|ref|YP_001976890.1| flagellar M-ring protein [Rhizobium etli CIAT 652]
 gi|190695627|gb|ACE89712.1| flagellar M-ring protein [Rhizobium etli CIAT 652]
          Length = 563

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 290/564 (51%), Positives = 395/564 (70%), Gaps = 10/564 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M +L+QL+Q FK+  +LGRTR++IL  V  + I + +AA  FVN P  + LYV L+  D+
Sbjct: 1   MNLLNQLVQIFKNFGALGRTRLMILGGVGALSIAIILAAALFVNKPAQETLYVGLDAPDL 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           N+IS+AL+EANI+F++  +G+SISVP+ M GKAR+ LA +GLP +S+N+GYELFD V S 
Sbjct: 61  NQISMALAEANINFQVGTDGASISVPAGMTGKARLMLAERGLP-NSANAGYELFDNVGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEIARTIQSISGI AARVHIVMP++G+FRK   +PTASVMIRA 
Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQSISGITAARVHIVMPEVGNFRKAEQKPTASVMIRAS 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239
             +   +A +IRHLVA+AVP LD+ DVT+LDS G+LL + +E   + L +SL+IVQ +Q 
Sbjct: 180 AATGRSAATSIRHLVASAVPGLDVDDVTILDSAGQLLASGDEASNSSLNRSLNIVQNVQQ 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           E+E NI+KALA FLG+DNFRS+V A+LN D QQI+E  YDP+SKVERS+R +K+AQ+S+ 
Sbjct: 240 EVESNIDKALAPFLGMDNFRSSVTADLNTDAQQIQETTYDPESKVERSVRSTKEAQQSQQ 299

Query: 300 SQPESAVTVEQNMPHVSD--RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
            Q ++A TVEQN+P  +        P S + +DK+EEQ+NYEIN+++ ATT ++YK+E+L
Sbjct: 300 KQSDNATTVEQNIPQAAPDAGGASGPESQDKSDKREEQTNYEINSRTTATTRNSYKVEKL 359

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           SIAVVVNKGR+ +++G  ADQ KID+YLAE+ KIV++A GI+++RGD +T+T+MDFLENQ
Sbjct: 360 SIAVVVNKGRIAKMVGEPADQAKIDAYLAEMQKIVASAAGIDAKRGDVVTVTAMDFLENQ 419

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA------KK 471
           L    T  V  MD+LSR+ A +IN+L F+    +V ++GL  L R  + + A        
Sbjct: 420 LLEDATGGVRVMDMLSRNLAGIINSLAFVAVAFVVVWMGLRPLVRSVSGNGASAVLGDAT 479

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
            E  G  +    P   A    LM          + +      +     N  V +  + +L
Sbjct: 480 PEAAGLELPDFAPAVGAPGGALMDGFGSDFGFDSTEDLLSLGDDDGNFNRRVKEGPERKL 539

Query: 532 LHMIEINEERFAKILRKWARSEIE 555
             M+EINEER AKILRKWA  +  
Sbjct: 540 ARMVEINEERAAKILRKWAIDDAA 563


>gi|2916780|emb|CAA11947.1| flagellar basal-body MS-ring protein [Sinorhizobium meliloti]
          Length = 557

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 270/554 (48%), Positives = 364/554 (65%), Gaps = 6/554 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M + DQ   F K+ ++LG+ +++ LA   +V I   + A  +VN   ++ LYV LE SDV
Sbjct: 1   MNLFDQFSTFTKNLSNLGQGKLIALAVAGVVAIGFVLGAGIYVNRRSFETLYVGLERSDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +IS+AL+EAN+DF +  +G SI VP  M GKAR+ LA +GLP SS+N+GYELFD V S 
Sbjct: 61  TQISIALAEANVDFEVGTDGGSIQVPVGMTGKARLLLAERGLP-SSANAGYELFDNVGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEI RTIQ ISGI AARVHIVMP+ GSFRK    PTASVMIRA 
Sbjct: 120 GLTSFMQEVTRVRALEGEIGRTIQQISGIAAARVHIVMPERGSFRKAEQTPTASVMIRAS 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239
                 +A +IRHLVA++VP LD+ DVTVLDSTG+LL + ++   + L +SL +VQ +Q 
Sbjct: 180 ATVGRSAASSIRHLVASSVPGLDVDDVTVLDSTGQLLASGDDPSNSALNQSLGVVQNVQS 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           ++E  I+ ALA FLG+DNFR++V A LN D QQI+E V+DP+S+VERS R+ K+ Q+S  
Sbjct: 240 DLEKKIDNALAPFLGMDNFRTSVTARLNTDAQQIQETVFDPESRVERSTRVIKEEQKSSQ 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
            QP++A TV+QN+P  + R     +S +  +KKEEQ+NYEIN+K+IAT  ++Y +ERLSI
Sbjct: 300 QQPDNAATVQQNVPQAAPRGGAGQQSSDEAEKKEEQTNYEINSKTIATVKNSYSIERLSI 359

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AVVVN+GRL  + G  ADQ KID+YL E+ KIVS+A GI+  RGD +T+ +MDF+E QL 
Sbjct: 360 AVVVNRGRLAAMAGEPADQAKIDAYLQEMQKIVSSAAGIDPGRGDVVTLNAMDFVETQLL 419

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK---KGEVGG 476
           +        M++L+R+   +INAL F+    LV + G+  L R           +GE  G
Sbjct: 420 DQAVPGPGIMEMLTRNLGGIINALAFVAVAFLVVWFGMRPLARQLGFGGQAGKLEGEAAG 479

Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536
             +    P  +     LM            D   +    ++  N  V +  + RL  M+E
Sbjct: 480 LELPDFSPAGAGAGGALMEGFGSDFGFDGGDDLLNL-GDEAGFNRRVKEGPERRLARMVE 538

Query: 537 INEERFAKILRKWA 550
           I+EER AKILRKWA
Sbjct: 539 ISEERAAKILRKWA 552


>gi|150395469|ref|YP_001325936.1| flagellar MS-ring protein [Sinorhizobium medicae WSM419]
 gi|150026984|gb|ABR59101.1| flagellar M-ring protein FliF [Sinorhizobium medicae WSM419]
          Length = 557

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 269/554 (48%), Positives = 364/554 (65%), Gaps = 6/554 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M + DQ   F K+ ++LG+ +++ LA   +V I   + A  +VN P ++ LYV LE SDV
Sbjct: 1   MNLFDQFSTFTKNLSNLGQGKLIALAVAGIVAIGFVLGAGVYVNRPSFETLYVGLERSDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +IS+AL+EAN+DF +  +G SI VP  M GKAR+ LA +GLP SS+N+GYELFD V S 
Sbjct: 61  TQISIALAEANVDFEVGTDGGSIQVPVGMTGKARLLLAERGLP-SSANAGYELFDNVGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEIARTIQ ISGI AARVHIVMP+ GSFRK    PTASVMIRA 
Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQQISGIAAARVHIVMPERGSFRKAEQTPTASVMIRAS 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239
                 +A +IRHLVA++VP LD+ DVTVLDSTG+LL + ++   + L +SL +VQ +Q 
Sbjct: 180 ATVGRSAAASIRHLVASSVPGLDVDDVTVLDSTGQLLASGDDPANSALNQSLGVVQNVQT 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           ++E  I+ ALA FLG+DNFR++V A LN D QQI+E V+DP+S+VERS R+ K+ Q+S  
Sbjct: 240 DLEKKIDNALAPFLGMDNFRTSVTARLNTDAQQIQETVFDPESRVERSTRVIKEEQKSSQ 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
            QP++A TV+QN+P  +       +S +   KKEEQ+NYEIN+K+IAT  ++Y +ERLSI
Sbjct: 300 QQPDNAATVQQNVPQAAPTGGAGQQSSDEAAKKEEQTNYEINSKTIATVKNSYSIERLSI 359

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AVVVN+GRL  + G  ADQ KID+YL ++ KIV++A GI+  RGD +T+ +MDF+E QL 
Sbjct: 360 AVVVNRGRLAAMAGEPADQAKIDAYLVQMQKIVASAAGIDPGRGDVVTLNAMDFVETQLL 419

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK---KGEVGG 476
           +        M++L+R+   +INAL F+    LV + G+  L R            GE  G
Sbjct: 420 DQAVPGPGMMEVLTRNIGGIINALAFVAVAFLVVWFGMRPLARQMGFGGQSGQLAGEAAG 479

Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536
             +    P ++     LM            D   +    ++  N  V +  + RL  M+E
Sbjct: 480 LELPDFSPAAAGAGGALMEGFGSDFGFDGGDDLLNL-GDEAGFNRRVKEGPERRLARMVE 538

Query: 537 INEERFAKILRKWA 550
           I+EER AKILRKWA
Sbjct: 539 ISEERAAKILRKWA 552


>gi|325291912|ref|YP_004277776.1| flagellar MS-ring protein [Agrobacterium sp. H13-3]
 gi|325059765|gb|ADY63456.1| flagellar MS-ring protein [Agrobacterium sp. H13-3]
          Length = 560

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 271/558 (48%), Positives = 385/558 (68%), Gaps = 7/558 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M +L+Q+ Q  K+  +LG+TR+L+L  V ++ + + +AA  +VN P Y+ LYV LE SD+
Sbjct: 1   MNLLNQIPQVLKNFAALGQTRLLMLGGVGILSMAIILAAALYVNRPAYETLYVGLEKSDL 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           N+IS+AL+EA +DF++  +G+S+ VP  +  KAR+ LA +GLP  S+N+GYELFD V S 
Sbjct: 61  NKISIALAEAGLDFQVGTDGASLQVPVGLTSKARLLLAERGLP-DSANAGYELFDNVGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEI+R+IQ I GI AARVHIVMPD+G+FR+   +PTASVMIRA 
Sbjct: 120 GLTSFMQEVTRVRALEGEISRSIQQIDGIAAARVHIVMPDVGNFRRGEQKPTASVMIRAN 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-GKSLSIVQAIQH 239
             +  K++ +IRHLVA+AVP L++ DVT+LDSTG+LL + +   N    +SL++ Q +Q 
Sbjct: 180 ATAGRKASASIRHLVASAVPGLEVDDVTLLDSTGQLLASGDDVTNAAMNRSLTLAQNVQQ 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           EI  NI+KALA FLG+DNFRS+V A+LN D++QI+E VYDP+S+VERS+R  K+ Q+S+ 
Sbjct: 240 EITTNIDKALAPFLGMDNFRSSVTAQLNTDSRQIQETVYDPESRVERSVRTVKEDQKSQE 299

Query: 300 SQPESAVTVEQNMPHVSDRK-VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
           +QP++A TVEQN+P  + +     P+S + + KKEEQ+NYEIN+K++AT  + Y +E++S
Sbjct: 300 TQPDTAATVEQNVPQAAPQGGAGGPQSSDQSAKKEEQTNYEINSKTVATVKNGYTVEKIS 359

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           +AVVVNKGR+ +++G   DQ KID+YLAE+ KIV++A G++S RGD +T+T+MDFLE QL
Sbjct: 360 VAVVVNKGRIAKMVGEPVDQAKIDAYLAEMQKIVTSAAGVSSDRGDIVTLTAMDFLETQL 419

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG----EV 474
            +        M++LSR+ A +IN+L F+    LV +LG+  L R    + A  G    E 
Sbjct: 420 LDEAASGPGIMEVLSRNSAGIINSLAFVAVAFLVVWLGVRPLVRTVTGNGAAAGQISQET 479

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
            G  +    P   A   GLM          + D      + +   N  V +  + RL  M
Sbjct: 480 AGLELPDFSPGMDAGAGGLMEGFGADFGFDSTDDLLAGGDSEGTFNRRVREGPERRLSRM 539

Query: 535 IEINEERFAKILRKWARS 552
           +EI+EER AKILRKWA  
Sbjct: 540 VEISEERAAKILRKWAVE 557


>gi|227820842|ref|YP_002824812.1| flagellar MS-ring protein [Sinorhizobium fredii NGR234]
 gi|227339841|gb|ACP24059.1| flagellar M-ring protein FliF [Sinorhizobium fredii NGR234]
          Length = 559

 Score =  495 bits (1274), Expect = e-138,   Method: Composition-based stats.
 Identities = 270/554 (48%), Positives = 372/554 (67%), Gaps = 6/554 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M + DQ   F K+ ++LG+++++ LA   +V I   + A  +VN P Y+ LYV LE SDV
Sbjct: 1   MNLFDQFSTFTKNLSNLGQSKLIALAVAGIVAIGFVLGAAIYVNKPAYETLYVGLERSDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +IS+AL+EAN+DF +  +G SI VP  M GKAR+ LA +GLP SS+N+GYELFD V S 
Sbjct: 61  TQISIALAEANLDFEVGSDGGSIQVPVGMTGKARLLLAERGLP-SSANAGYELFDNVGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEIARTIQ ISGI AARVHIVMP+ GSFRK    PTASVMIRA 
Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQQISGIAAARVHIVMPERGSFRKAEQTPTASVMIRAS 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239
                 +A +IRHLVA++VP LD+ DVT+LDSTG+LL + ++   + L +SL +VQ +Q 
Sbjct: 180 ATVGRGAASSIRHLVASSVPGLDIDDVTILDSTGQLLASGDDPANSALNQSLGVVQNVQT 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           ++E  I+ ALA FLG+DNFR++V A LN D QQI+E V+DP+S+VERS R+ K+ Q+S  
Sbjct: 240 DLEKKIDNALAPFLGMDNFRTSVTASLNTDAQQIQETVFDPESRVERSTRVIKEEQKSSQ 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
            QP++A TV+QN+P  + R     +S +   KKEEQ+NYEIN+K+IAT  ++Y +ERLSI
Sbjct: 300 QQPDNAATVQQNVPQAAPRGGAGQQSNDEAAKKEEQTNYEINSKTIATVKNSYSIERLSI 359

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AVVVN+GRL  ++G  ADQ KID+YL ++ KIV++A G+++ RGD +T+ +MDF+E QL 
Sbjct: 360 AVVVNRGRLAAMVGEGADQAKIDAYLQDMQKIVASAAGVDTNRGDVVTLNAMDFVETQLL 419

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK---KGEVGG 476
           +        M++L+R+   +IN+L F++   LV +LG+  L R           +GE  G
Sbjct: 420 DQAVAGPGVMEMLTRNLGGIINSLAFILVAFLVVWLGMRPLARQMGFGGQSGHLEGEGAG 479

Query: 477 KSILSPPP-ISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
             +    P  +SA    LM          + D   +  +  +  N  V +  + RL  M+
Sbjct: 480 LELPDFSPAGASAAGGALMEGFGSDFGFDSTDDLLNISDEGNGFNRRVKEGPERRLARMV 539

Query: 536 EINEERFAKILRKW 549
           EI+EER AKILRKW
Sbjct: 540 EISEERAAKILRKW 553


>gi|86356297|ref|YP_468189.1| flagellar MS-ring protein [Rhizobium etli CFN 42]
 gi|86280399|gb|ABC89462.1| flagellar M-ring protein [Rhizobium etli CFN 42]
          Length = 563

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 291/564 (51%), Positives = 398/564 (70%), Gaps = 10/564 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M +L+QL+Q FK+  +LGRTR++IL  V  V I + +AA  FVN P  + LYV L+  D+
Sbjct: 1   MNLLNQLVQIFKNFGALGRTRLMILGGVGSVSIAIILAAALFVNKPAQETLYVGLDAPDL 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           N+IS+AL+EANI+F++  +GSSI+VP+ M GKAR+ LA +GLP +S+N+GYELFD V S 
Sbjct: 61  NQISMALAEANINFQVGTDGSSITVPAGMTGKARLMLAERGLP-NSANAGYELFDNVGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEIARTIQSISGI AARVHIVMP++G+FRK   +PTASVMIRA 
Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQSISGITAARVHIVMPEVGNFRKAEQKPTASVMIRAS 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239
             +   +A +IRHLVA+AVP LD+ DVT+LDS G+LL + +E   + L +SL+IVQ +Q 
Sbjct: 180 AATGRSAATSIRHLVASAVPGLDVDDVTILDSAGQLLASGDEASNSSLNRSLNIVQNVQQ 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           E+E NI+KALA FLG+DNFRS+V A+LN D QQI+E VYDP+SKVERS+R +K+AQ+S+ 
Sbjct: 240 EVESNIDKALAPFLGMDNFRSSVTADLNTDAQQIQETVYDPESKVERSVRSTKEAQQSQQ 299

Query: 300 SQPESAVTVEQNMPHVSDRKVP--LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
            Q ++A TVEQN+P  +        P S + +DK+EEQ+NYEIN+K+ ATT ++Y++E+L
Sbjct: 300 RQSDNATTVEQNIPQAAPDAGGSGGPESQDKSDKREEQTNYEINSKTTATTRNSYQVEKL 359

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           SIAVVVNKGR+ +++G  ADQ KID+YLAE++KIV++A GI+++RGD +T+T+MDFLENQ
Sbjct: 360 SIAVVVNKGRIAKMVGEPADQAKIDAYLAEMHKIVASAAGIDAKRGDVVTVTAMDFLENQ 419

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA------KK 471
           L    T  V  MD+LSR+ A +IN+L F+    +V ++GL  L R  + + +        
Sbjct: 420 LLEDATGGVRVMDMLSRNLAGIINSLAFVAVAFVVVWMGLRPLVRSVSGNGSSSVLGDAT 479

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
            E  G  +    P + A    LM          + +      +     N  V +  + +L
Sbjct: 480 PEAAGLELPDFAPAAGAAGGALMDGFGSDFGFDSTEDLLSLGDDDGNFNRRVKEGPERKL 539

Query: 532 LHMIEINEERFAKILRKWARSEIE 555
             M+EINEER AKILRKWA  +  
Sbjct: 540 ARMVEINEERAAKILRKWAIDDAA 563


>gi|209547913|ref|YP_002279830.1| flagellar MS-ring protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209533669|gb|ACI53604.1| flagellar M-ring protein FliF [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 563

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 293/564 (51%), Positives = 397/564 (70%), Gaps = 10/564 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M +L+QL+Q FK+  SLGRTR++IL  V  V I + +AA  FVN P  + LYV L+  D+
Sbjct: 1   MNLLNQLVQIFKNFGSLGRTRLMILGGVGAVSIAIVLAAALFVNKPAQETLYVGLDSPDL 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           N+IS+AL+EAN+DF++  +G+SISVP+ M GKAR+ LA +GLP +S+N+GYELFD V S 
Sbjct: 61  NQISMALAEANVDFQVGTDGTSISVPAGMTGKARLLLAERGLP-NSANAGYELFDNVGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEIARTIQSISGI AARVHIVMP++G+FRK   +PTASVMIRA 
Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQSISGITAARVHIVMPEVGNFRKAEQKPTASVMIRAS 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239
             +   +A +IRHLVA+AVP LD+ DVT+LDS G+LL + +E   + L +SL+IVQ +Q 
Sbjct: 180 ATTGRSAATSIRHLVASAVPGLDVDDVTILDSAGQLLASGDEASNSSLNRSLNIVQNVQQ 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           E+E NI+KALA FLG+DNFRS+V A+LN D QQI+E  YDP+SKVERS+R +K+AQ+S+ 
Sbjct: 240 EVESNIDKALAPFLGMDNFRSSVTADLNTDAQQIQETTYDPESKVERSVRSTKEAQQSQQ 299

Query: 300 SQPESAVTVEQNMPHVSDRKVP--LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
            Q +SA TVEQN+P  +        P S + +DK+EEQ+NYEIN+++ ATT ++YK+E+L
Sbjct: 300 KQSDSATTVEQNIPQAAPEAGGSAGPESQDKSDKREEQTNYEINSRTTATTRNSYKVEKL 359

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           SIAVVVNKGR+ +++G  ADQ KID+YLAE+ KIV++A+GI+++RGD +T+T+MDFLENQ
Sbjct: 360 SIAVVVNKGRIAKMVGEPADQAKIDAYLAEMQKIVASASGIDAKRGDVVTVTAMDFLENQ 419

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA------KK 471
           L    T  V  MD+LSR+ A +IN+L F+    +V ++GL  L R  + + +        
Sbjct: 420 LLEDATGGVRVMDMLSRNLAGIINSLAFVAVAFVVVWMGLRPLVRSVSGNGSSSVLGDAT 479

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
            E  G  +    P + A    LM          + +      +     N  V +  + +L
Sbjct: 480 PEAAGLELPDFAPAAGASGGALMDGFGSDFGFDSTEDLLSLGDDDGNFNRRVKEGPERKL 539

Query: 532 LHMIEINEERFAKILRKWARSEIE 555
             M+EINEER AKILRKWA  E  
Sbjct: 540 SRMVEINEERAAKILRKWAIDEAA 563


>gi|222084850|ref|YP_002543379.1| flagellar M-ring protein [Agrobacterium radiobacter K84]
 gi|221722298|gb|ACM25454.1| flagellar M-ring protein [Agrobacterium radiobacter K84]
          Length = 559

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 270/555 (48%), Positives = 385/555 (69%), Gaps = 6/555 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M +L+QL+  F++  +LGRTR+L LA V ++ + L + A  +VN P  + LYV L+ +D+
Sbjct: 1   MNLLNQLVPLFRNLQNLGRTRLLTLAGVGILSVALVLFAALYVNKPAQETLYVGLDATDL 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           N+IS+AL+EA I+F++  +G+S++VP+ M GKAR  LA +GLP +S+N+GYELFD V S 
Sbjct: 61  NQISIALAEAKINFQVGADGTSLTVPTGMTGKARALLAERGLP-NSTNAGYELFDNVGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEI RTI SISGI AARVHIVM D+G+FRK   +PTASVMIRA 
Sbjct: 120 GLTSFMQEVTRVRALEGEIGRTITSISGISAARVHIVMQDVGNFRKADQKPTASVMIRAN 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQH 239
             +  K+A+AIRHLVA+AVP L++ DVT+LDSTG+LL + + + N  L ++L IVQ +Q 
Sbjct: 180 AEAARKAAQAIRHLVASAVPGLEVDDVTILDSTGQLLASGDDQSNGALNRNLGIVQNVQG 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           EI  NI+KALA FLG+DNFRS+V A+LN D+QQ++E  YDP+SKVERS+R +K+AQ+S+ 
Sbjct: 240 EIASNIDKALAPFLGMDNFRSSVTAQLNTDSQQVQETTYDPESKVERSVRTTKEAQKSQQ 299

Query: 300 SQPESAVTVEQNMPHVSDRKVP-LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
            Q ++A TVEQN+P  + +     P S + TDK+EEQ+NYEIN+K+ AT  ++Y++E+LS
Sbjct: 300 RQSDTAATVEQNIPQAAPQAGGNGPTSNDQTDKREEQTNYEINSKTTATVRNSYRIEKLS 359

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           +AVVVN+GR+ +++G+ AD  K+D+Y+AE+ KIV+ A G++  RGD +T+ +MDFL+ QL
Sbjct: 360 VAVVVNRGRIAQMVGQPADPAKVDAYIAEMQKIVATAAGLDPSRGDVVTVNAMDFLDTQL 419

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH--NIDDAKKGEVGG 476
            +     ++ MD+LSR+ A +IN+L F+   +L+ +LG   L R      +     +  G
Sbjct: 420 LDDNASGLNIMDVLSRNIAGIINSLAFVAVAVLIIWLGFRPLIRSLGGGANGTALPDAAG 479

Query: 477 KSILSPPPIS-SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
             +    P +       LM          + D         S  N  V +  + RL  M+
Sbjct: 480 LELPDFAPGAVGGPGAALMDGFGSDFGFDSTDDLLTMGEDNSTFNRRVKEGPERRLSRMV 539

Query: 536 EINEERFAKILRKWA 550
           EI+EER AKILRKWA
Sbjct: 540 EISEERAAKILRKWA 554


>gi|15887871|ref|NP_353552.1| flagellar MS-ring protein [Agrobacterium tumefaciens str. C58]
 gi|15155457|gb|AAK86337.1| flagellar M-ring protein [Agrobacterium tumefaciens str. C58]
          Length = 566

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 266/558 (47%), Positives = 383/558 (68%), Gaps = 7/558 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M +L+Q+ Q  K+  +LG+TR+L+L  V ++ + + +AA  +VN P Y+ LYV LE SD+
Sbjct: 7   MNLLNQIPQVLKNVAALGQTRLLMLGGVGVLSMAIILAAALYVNRPAYETLYVGLEKSDL 66

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           N+IS+AL+E+ +DF++  +GSS+ VP  +  KAR+ LA +GLP  S+N+GYELFD V S 
Sbjct: 67  NKISIALAESGLDFQVGTDGSSLQVPVGLTSKARLLLAERGLP-DSANAGYELFDNVGSL 125

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEI R+IQ I G+ AARVHIV+PD+G+FR+   +PTASVMIRA 
Sbjct: 126 GLTSFMQEVTRVRALEGEIGRSIQQIDGVSAARVHIVLPDVGNFRRGEQKPTASVMIRAS 185

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-GKSLSIVQAIQH 239
             +  K++ +IRHLVA+AVP L++ DVT+LDSTG+LL + +   N    +SL++ Q +Q 
Sbjct: 186 ASAGRKASASIRHLVASAVPGLEVDDVTLLDSTGQLLASGDDVTNAAMNRSLTLAQNVQQ 245

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           EI  NI+KALA FLG+DNFRS+V A++N D++Q++E VYDP+S+VERS+R  K+ Q+S+ 
Sbjct: 246 EITTNIDKALAPFLGIDNFRSSVTAQINTDSRQVQETVYDPESRVERSVRTVKEDQKSQE 305

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPR-SLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
           +QP++A TVEQN+P  + +       S + + KKEEQ+NYEIN+K++AT  + Y LE++S
Sbjct: 306 TQPDTAATVEQNVPQAAPQGGGGGPQSSDQSAKKEEQTNYEINSKTVATVKNGYTLEKIS 365

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           +AVVVNKGR+ +++G  ADQ KID+YLAE+ KIV++A GI+S RGD +T+T+MDFLE QL
Sbjct: 366 VAVVVNKGRIAKMVGEPADQAKIDAYLAEMQKIVTSAAGISSDRGDIVTLTAMDFLETQL 425

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV---- 474
            +        M++LSR+ A +IN+L F+    LV +LG+  L R    + +   ++    
Sbjct: 426 LDEAASGPGVMEVLSRNSAGIINSLAFVAVAFLVVWLGVRPLVRTVTANGSAAAQLSQES 485

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
            G  +    P   A   GLM          + D      + +   N  V +  + RL  M
Sbjct: 486 AGLELPDFSPGMEAGAGGLMEGFGADFGFDSTDDLLAGGDGEGTFNRRVREGPERRLSRM 545

Query: 535 IEINEERFAKILRKWARS 552
           +EI+EER AKILRKWA  
Sbjct: 546 VEISEERAAKILRKWAVE 563


>gi|256059797|ref|ZP_05449992.1| flagellar MS-ring protein [Brucella neotomae 5K33]
 gi|261323777|ref|ZP_05962974.1| flagellar M-ring protein FliF [Brucella neotomae 5K33]
 gi|261299757|gb|EEY03254.1| flagellar M-ring protein FliF [Brucella neotomae 5K33]
          Length = 580

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 217/563 (38%), Positives = 328/563 (58%), Gaps = 9/563 (1%)

Query: 4   LDQLLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
             QL++  K     LG  ++++L  V    +   +    ++  P Y+ LYV L   DVNR
Sbjct: 10  FQQLIEQLKGTLGKLGARKLIVLGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVNR 69

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           + +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S GL
Sbjct: 70  MGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGL 128

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           TSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA   
Sbjct: 129 TSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGG 188

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEI 241
              +SA++IR LVAAAVP+LD   VTVLD+ G LL +A E        + S+ Q +   +
Sbjct: 189 FSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASHV 248

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           + +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  ++
Sbjct: 249 DDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNNR 308

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
            ++A  VEQN+P    +      S E TD++EE +NYE+N+K+++T  D Y ++RLSIAV
Sbjct: 309 NDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIAV 368

Query: 362 VVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           V+++ RL +  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL+    +
Sbjct: 369 VIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGAD 428

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA--KKGEVGGKS 478
              V   + D L R   +  NAL  L    L+ + GL  L R  N+  A  +        
Sbjct: 429 MEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAGE 488

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
           + +P  I  A + G      I   ++  D    S    S +   +   + LRL  MIE++
Sbjct: 489 VATPNFIGGAESVGEGVQAVIGGPAAYADQMKTS---LSDLRQRMRMPAKLRLEQMIEMD 545

Query: 539 EERFAKILRKWARSEIEDRYTQH 561
           EER A +L++W       R    
Sbjct: 546 EERVAAVLKQWIHETASGREADP 568


>gi|260568707|ref|ZP_05839176.1| flagellar M-ring protein FliF [Brucella suis bv. 4 str. 40]
 gi|260155372|gb|EEW90453.1| flagellar M-ring protein FliF [Brucella suis bv. 4 str. 40]
          Length = 580

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 217/563 (38%), Positives = 327/563 (58%), Gaps = 9/563 (1%)

Query: 4   LDQLLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
             QL++  K     LG  +++ L  V    +   +    ++  P Y+ LYV L   DVNR
Sbjct: 10  FQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYMSIYLGRPSYETLYVGLSRDDVNR 69

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           + +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S GL
Sbjct: 70  MGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGL 128

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           TSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA   
Sbjct: 129 TSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGG 188

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEI 241
              +SA++IR LVAAAVP+LD   VTVLD+ G LL +A E        + S+ Q +   +
Sbjct: 189 FSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASHV 248

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           + +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  ++
Sbjct: 249 DDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNNR 308

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
            ++A  VEQN+P    +      S E TD++EE +NYE+N+K+++T  D Y ++RLSIAV
Sbjct: 309 NDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIAV 368

Query: 362 VVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           V+++ RL +  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL+    +
Sbjct: 369 VIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGAD 428

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA--KKGEVGGKS 478
              V   + D L R   +  NAL  L    L+ + GL  L R  N+  A  +        
Sbjct: 429 MEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAGE 488

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
           + +P  I  A + G      I   ++  D    S    S +   +   + LRL  MIE++
Sbjct: 489 VATPNFIGGAESVGEGVQAVIGGPAAYADQMKTS---LSDLRQRMRMPAKLRLEQMIEMD 545

Query: 539 EERFAKILRKWARSEIEDRYTQH 561
           EER A +L++W       R    
Sbjct: 546 EERVAAVLKQWIHETASGREADP 568


>gi|261219820|ref|ZP_05934101.1| flagellar M-ring protein FliF [Brucella ceti B1/94]
 gi|265996839|ref|ZP_06109396.1| flagellar M-ring protein FliF [Brucella ceti M490/95/1]
 gi|260918404|gb|EEX85057.1| flagellar M-ring protein FliF [Brucella ceti B1/94]
 gi|262551136|gb|EEZ07297.1| flagellar M-ring protein FliF [Brucella ceti M490/95/1]
          Length = 580

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 217/563 (38%), Positives = 326/563 (57%), Gaps = 9/563 (1%)

Query: 4   LDQLLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
             QL++  K     LG  +++ L  V    +   +    ++  P Y+ LYV L   DVNR
Sbjct: 10  FQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVNR 69

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +  AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S GL
Sbjct: 70  MGRALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGL 128

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           TSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA   
Sbjct: 129 TSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGG 188

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEI 241
              +SA++IR LVAAAVP+LD   VTVLD+ G LL +A E        + S+ Q +   +
Sbjct: 189 FSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASHV 248

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           + +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  ++
Sbjct: 249 DDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNNR 308

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
            ++A  VEQN+P    +      S E TD++EE +NYE+N+K+++T  D Y ++RLSIAV
Sbjct: 309 NDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIAV 368

Query: 362 VVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           V+++ RL +  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL+    +
Sbjct: 369 VIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGAD 428

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA--KKGEVGGKS 478
              V   + D L R   +  NAL  L    L+ + GL  L R  N+  A  +        
Sbjct: 429 MEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAGE 488

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
           + +P  I  A + G      I   ++  D    S    S +   +   + LRL  MIE++
Sbjct: 489 VATPNFIGGAESVGEGVQAVIGGPAAYADQMKTS---LSDLRQRMRMPAKLRLEQMIEMD 545

Query: 539 EERFAKILRKWARSEIEDRYTQH 561
           EER A +L++W       R    
Sbjct: 546 EERVAAVLKQWIHETASGREADP 568


>gi|23500860|ref|NP_700300.1| flagellar MS-ring protein [Brucella suis 1330]
 gi|83269941|ref|YP_419232.1| flagellar MS-ring protein [Brucella melitensis biovar Abortus 2308]
 gi|225628435|ref|ZP_03786469.1| flagellar M-ring protein FliF [Brucella ceti str. Cudo]
 gi|237817511|ref|ZP_04596501.1| flagellar M-ring protein FliF [Brucella abortus str. 2308 A]
 gi|256015905|ref|YP_003105914.1| flagellar M-ring protein FliF [Brucella microti CCM 4915]
 gi|260166802|ref|ZP_05753613.1| flagellar MS-ring protein [Brucella sp. F5/99]
 gi|260544149|ref|ZP_05819970.1| flagellar M-ring protein FliF [Brucella abortus NCTC 8038]
 gi|260757235|ref|ZP_05869583.1| flagellar M-ring protein FliF [Brucella abortus bv. 6 str. 870]
 gi|260759400|ref|ZP_05871748.1| flagellar M-ring protein FliF [Brucella abortus bv. 4 str. 292]
 gi|260762643|ref|ZP_05874975.1| flagellar M-ring protein FliF [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883039|ref|ZP_05894653.1| flagellar M-ring protein FliF [Brucella abortus bv. 9 str. C68]
 gi|261318817|ref|ZP_05958014.1| flagellar M-ring protein FliF [Brucella pinnipedialis B2/94]
 gi|261749710|ref|ZP_05993419.1| flagellar M-ring protein [Brucella suis bv. 5 str. 513]
 gi|261752953|ref|ZP_05996662.1| flagellar M-ring protein FliF [Brucella suis bv. 3 str. 686]
 gi|261756180|ref|ZP_05999889.1| flagellar M-ring protein FliF [Brucella sp. F5/99]
 gi|265987176|ref|ZP_06099733.1| flagellar M-ring protein FliF [Brucella pinnipedialis M292/94/1]
 gi|294852976|ref|ZP_06793648.1| flagellar M-ring protein FliF [Brucella sp. NVSL 07-0026]
 gi|297250144|ref|ZP_06933845.1| flagellar M-ring protein FliF [Brucella abortus bv. 5 str. B3196]
 gi|38257618|sp|Q8FUS3|FLIF_BRUSU RecName: Full=Flagellar M-ring protein FliF
 gi|23464525|gb|AAN34305.1| flagellar M-ring protein FliF [Brucella suis 1330]
 gi|82940215|emb|CAJ13271.1| Flagellar FliF M-ring protein:Type III secretion system outer
           membrane K protein:Secretory protein YscJ/FliF [Brucella
           melitensis biovar Abortus 2308]
 gi|225616281|gb|EEH13329.1| flagellar M-ring protein FliF [Brucella ceti str. Cudo]
 gi|237787266|gb|EEP61484.1| flagellar M-ring protein FliF [Brucella abortus str. 2308 A]
 gi|255998565|gb|ACU50252.1| flagellar M-ring protein FliF [Brucella microti CCM 4915]
 gi|260097420|gb|EEW81294.1| flagellar M-ring protein FliF [Brucella abortus NCTC 8038]
 gi|260669718|gb|EEX56658.1| flagellar M-ring protein FliF [Brucella abortus bv. 4 str. 292]
 gi|260673064|gb|EEX59885.1| flagellar M-ring protein FliF [Brucella abortus bv. 2 str. 86/8/59]
 gi|260677343|gb|EEX64164.1| flagellar M-ring protein FliF [Brucella abortus bv. 6 str. 870]
 gi|260872567|gb|EEX79636.1| flagellar M-ring protein FliF [Brucella abortus bv. 9 str. C68]
 gi|261298040|gb|EEY01537.1| flagellar M-ring protein FliF [Brucella pinnipedialis B2/94]
 gi|261736164|gb|EEY24160.1| flagellar M-ring protein FliF [Brucella sp. F5/99]
 gi|261739463|gb|EEY27389.1| flagellar M-ring protein [Brucella suis bv. 5 str. 513]
 gi|261742706|gb|EEY30632.1| flagellar M-ring protein FliF [Brucella suis bv. 3 str. 686]
 gi|264659373|gb|EEZ29634.1| flagellar M-ring protein FliF [Brucella pinnipedialis M292/94/1]
 gi|294818631|gb|EFG35631.1| flagellar M-ring protein FliF [Brucella sp. NVSL 07-0026]
 gi|297174013|gb|EFH33377.1| flagellar M-ring protein FliF [Brucella abortus bv. 5 str. B3196]
          Length = 580

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 217/563 (38%), Positives = 327/563 (58%), Gaps = 9/563 (1%)

Query: 4   LDQLLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
             QL++  K     LG  +++ L  V    +   +    ++  P Y+ LYV L   DVNR
Sbjct: 10  FQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVNR 69

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           + +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S GL
Sbjct: 70  MGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGL 128

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           TSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA   
Sbjct: 129 TSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGG 188

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEI 241
              +SA++IR LVAAAVP+LD   VTVLD+ G LL +A E        + S+ Q +   +
Sbjct: 189 FSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASHV 248

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           + +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  ++
Sbjct: 249 DDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNNR 308

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
            ++A  VEQN+P    +      S E TD++EE +NYE+N+K+++T  D Y ++RLSIAV
Sbjct: 309 NDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIAV 368

Query: 362 VVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           V+++ RL +  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL+    +
Sbjct: 369 VIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGAD 428

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA--KKGEVGGKS 478
              V   + D L R   +  NAL  L    L+ + GL  L R  N+  A  +        
Sbjct: 429 MEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAGE 488

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
           + +P  I  A + G      I   ++  D    S    S +   +   + LRL  MIE++
Sbjct: 489 VATPNFIGGAESVGEGVQAVIGGPAAYADQMKTS---LSDLRQRMRMPAKLRLEQMIEMD 545

Query: 539 EERFAKILRKWARSEIEDRYTQH 561
           EER A +L++W       R    
Sbjct: 546 EERVAAVLKQWIHETASGREADP 568


>gi|256158325|ref|ZP_05456229.1| flagellar MS-ring protein [Brucella ceti M490/95/1]
 gi|256252741|ref|ZP_05458277.1| flagellar MS-ring protein [Brucella ceti B1/94]
          Length = 575

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 217/563 (38%), Positives = 326/563 (57%), Gaps = 9/563 (1%)

Query: 4   LDQLLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
             QL++  K     LG  +++ L  V    +   +    ++  P Y+ LYV L   DVNR
Sbjct: 5   FQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVNR 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +  AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S GL
Sbjct: 65  MGRALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGL 123

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           TSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA   
Sbjct: 124 TSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGG 183

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEI 241
              +SA++IR LVAAAVP+LD   VTVLD+ G LL +A E        + S+ Q +   +
Sbjct: 184 FSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASHV 243

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           + +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  ++
Sbjct: 244 DDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNNR 303

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
            ++A  VEQN+P    +      S E TD++EE +NYE+N+K+++T  D Y ++RLSIAV
Sbjct: 304 NDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIAV 363

Query: 362 VVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           V+++ RL +  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL+    +
Sbjct: 364 VIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGAD 423

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA--KKGEVGGKS 478
              V   + D L R   +  NAL  L    L+ + GL  L R  N+  A  +        
Sbjct: 424 MEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAGE 483

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
           + +P  I  A + G      I   ++  D    S    S +   +   + LRL  MIE++
Sbjct: 484 VATPNFIGGAESVGEGVQAVIGGPAAYADQMKTS---LSDLRQRMRMPAKLRLEQMIEMD 540

Query: 539 EERFAKILRKWARSEIEDRYTQH 561
           EER A +L++W       R    
Sbjct: 541 EERVAAVLKQWIHETASGREADP 563


>gi|261215451|ref|ZP_05929732.1| flagellar M-ring protein FliF [Brucella abortus bv. 3 str. Tulya]
 gi|260917058|gb|EEX83919.1| flagellar M-ring protein FliF [Brucella abortus bv. 3 str. Tulya]
          Length = 580

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 217/563 (38%), Positives = 327/563 (58%), Gaps = 9/563 (1%)

Query: 4   LDQLLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
             QL++  K     LG  +++ L  V    +   +    ++  P Y+ LYV L   DVNR
Sbjct: 10  FQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVNR 69

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           + +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S GL
Sbjct: 70  MGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGL 128

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           TSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA   
Sbjct: 129 TSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGG 188

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEI 241
              +SA++IR LVAAAVP+LD   VTVLD+ G LL +A E        + S+ Q +   +
Sbjct: 189 FSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASHV 248

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           + +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  ++
Sbjct: 249 DDSIRKALAPYLGLGHFQTSVQAVLDTDRRQTKETTYDPESRVERSVRVVRESGDSRNNR 308

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
            ++A  VEQN+P    +      S E TD++EE +NYE+N+K+++T  D Y ++RLSIAV
Sbjct: 309 NDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIAV 368

Query: 362 VVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           V+++ RL +  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL+    +
Sbjct: 369 VIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGAD 428

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA--KKGEVGGKS 478
              V   + D L R   +  NAL  L    L+ + GL  L R  N+  A  +        
Sbjct: 429 MEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAGE 488

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
           + +P  I  A + G      I   ++  D    S    S +   +   + LRL  MIE++
Sbjct: 489 VATPNFIGGAESVGEGVQAVIGGPAAYADQMKTS---LSDLRQRMRMPAKLRLEQMIEMD 545

Query: 539 EERFAKILRKWARSEIEDRYTQH 561
           EER A +L++W       R    
Sbjct: 546 EERVAAVLKQWIHETASGREADP 568


>gi|189023215|ref|YP_001932956.1| flagellar MS-ring protein [Brucella abortus S19]
 gi|254691603|ref|ZP_05154857.1| flagellar MS-ring protein [Brucella abortus bv. 6 str. 870]
 gi|254698196|ref|ZP_05160024.1| flagellar MS-ring protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|254699268|ref|ZP_05161096.1| flagellar MS-ring protein [Brucella suis bv. 5 str. 513]
 gi|254702392|ref|ZP_05164220.1| flagellar MS-ring protein [Brucella suis bv. 3 str. 686]
 gi|254711225|ref|ZP_05173036.1| flagellar MS-ring protein [Brucella pinnipedialis B2/94]
 gi|254731641|ref|ZP_05190219.1| flagellar MS-ring protein [Brucella abortus bv. 4 str. 292]
 gi|256030146|ref|ZP_05443760.1| flagellar MS-ring protein [Brucella pinnipedialis M292/94/1]
 gi|256256791|ref|ZP_05462327.1| flagellar MS-ring protein [Brucella abortus bv. 9 str. C68]
 gi|189021789|gb|ACD74510.1| flagellar M-ring protein FliF [Brucella abortus S19]
          Length = 575

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 217/563 (38%), Positives = 327/563 (58%), Gaps = 9/563 (1%)

Query: 4   LDQLLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
             QL++  K     LG  +++ L  V    +   +    ++  P Y+ LYV L   DVNR
Sbjct: 5   FQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVNR 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           + +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S GL
Sbjct: 65  MGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGL 123

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           TSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA   
Sbjct: 124 TSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGG 183

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEI 241
              +SA++IR LVAAAVP+LD   VTVLD+ G LL +A E        + S+ Q +   +
Sbjct: 184 FSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASHV 243

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           + +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  ++
Sbjct: 244 DDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNNR 303

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
            ++A  VEQN+P    +      S E TD++EE +NYE+N+K+++T  D Y ++RLSIAV
Sbjct: 304 NDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIAV 363

Query: 362 VVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           V+++ RL +  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL+    +
Sbjct: 364 VIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGAD 423

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA--KKGEVGGKS 478
              V   + D L R   +  NAL  L    L+ + GL  L R  N+  A  +        
Sbjct: 424 MEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAGE 483

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
           + +P  I  A + G      I   ++  D    S    S +   +   + LRL  MIE++
Sbjct: 484 VATPNFIGGAESVGEGVQAVIGGPAAYADQMKTS---LSDLRQRMRMPAKLRLEQMIEMD 540

Query: 539 EERFAKILRKWARSEIEDRYTQH 561
           EER A +L++W       R    
Sbjct: 541 EERVAAVLKQWIHETASGREADP 563


>gi|254695100|ref|ZP_05156928.1| flagellar MS-ring protein [Brucella abortus bv. 3 str. Tulya]
          Length = 575

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 217/563 (38%), Positives = 327/563 (58%), Gaps = 9/563 (1%)

Query: 4   LDQLLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
             QL++  K     LG  +++ L  V    +   +    ++  P Y+ LYV L   DVNR
Sbjct: 5   FQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVNR 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           + +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S GL
Sbjct: 65  MGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGL 123

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           TSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA   
Sbjct: 124 TSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGG 183

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEI 241
              +SA++IR LVAAAVP+LD   VTVLD+ G LL +A E        + S+ Q +   +
Sbjct: 184 FSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASHV 243

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           + +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  ++
Sbjct: 244 DDSIRKALAPYLGLGHFQTSVQAVLDTDRRQTKETTYDPESRVERSVRVVRESGDSRNNR 303

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
            ++A  VEQN+P    +      S E TD++EE +NYE+N+K+++T  D Y ++RLSIAV
Sbjct: 304 NDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIAV 363

Query: 362 VVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           V+++ RL +  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL+    +
Sbjct: 364 VIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGAD 423

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA--KKGEVGGKS 478
              V   + D L R   +  NAL  L    L+ + GL  L R  N+  A  +        
Sbjct: 424 MEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAGE 483

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
           + +P  I  A + G      I   ++  D    S    S +   +   + LRL  MIE++
Sbjct: 484 VATPNFIGGAESVGEGVQAVIGGPAAYADQMKTS---LSDLRQRMRMPAKLRLEQMIEMD 540

Query: 539 EERFAKILRKWARSEIEDRYTQH 561
           EER A +L++W       R    
Sbjct: 541 EERVAAVLKQWIHETASGREADP 563


>gi|170741410|ref|YP_001770065.1| flagellar MS-ring protein [Methylobacterium sp. 4-46]
 gi|168195684|gb|ACA17631.1| flagellar M-ring protein FliF [Methylobacterium sp. 4-46]
          Length = 572

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 192/571 (33%), Positives = 310/571 (54%), Gaps = 18/571 (3%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M+  +Q  + + +   LG  R+  L  + L   +      ++++ P  + LY  L   DV
Sbjct: 1   MSGREQAERLWNNIIELGARRLAALGIIGLTVFLAVGLGAYYLSRPAQETLYGGLSRDDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            RI   L +ANI F +S +G+++ VP     +AR+ LA +GLP SS  SGYELF+ + S 
Sbjct: 61  GRIGSVLKDANIPFDVSTDGTAVLVPYGHTAQARMLLAEKGLPQSSK-SGYELFNDLGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEIARTIQ++ G+ AARVHIV+PD GSFR+    P+ASV++R  
Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQTMKGVKAARVHIVLPDRGSFRREQQPPSASVVVRTE 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239
                  A+AIRHLVA+A+P +    VTV+ + G LL + +++     GK  ++ + +  
Sbjct: 180 PADDGSGAQAIRHLVASAIPGMKPERVTVIGTDGTLLLSGDDVGNAPTGKMANLEKLVNR 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           EI+ NI + L  +LGV NF  +V A LN D     E +++PD +VERS++ +++ + S+ 
Sbjct: 240 EIQDNIRRTLTPYLGVGNFEVSVAARLNTDKTSTNETIFNPDQRVERSVKATRETENSQN 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
              +   T +QN+P    R      S   T K+E+ +NYEI++K+I T  D Y ++++S+
Sbjct: 300 RSSQRPTTAQQNLPDQRTRSDGNDTSSTETQKREDLTNYEISSKTIQTVSDGYGIKQISV 359

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AV+VNK RL+ + G +A    ID  + EI ++V++A G +  RGD + + ++ F+ +   
Sbjct: 360 AVLVNKSRLSSLAGPNAPPAAIDQQIGEIEQLVASAAGFSKERGDHVKVAAVGFVNDGAP 419

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNIDDAKKGEVGGKS 478
                 +S  ++L R  AT+INA   LV   L+ + GL   LR +  +  A++      +
Sbjct: 420 LEPVPPLSLTEVLMRQSATLINAATILVVASLLIWFGLRPALRAILEVPAAEQEIAALAA 479

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRN---------------LQSRINSYV 523
             +   + +             L+ S +     +                 L   + + +
Sbjct: 480 EGAAGAVPALPGAEAGSAAAGLLEGSPEAAALAAAGGTPGPAQLGPPVMASLIDDLTNRM 539

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEI 554
           +     +L  MIE +EE+ A IL++W   E 
Sbjct: 540 NSSPQKKLEQMIEFDEEQAANILKRWLMREE 570


>gi|161621189|ref|YP_001595075.1| flagellar MS-ring protein [Brucella canis ATCC 23365]
 gi|161338000|gb|ABX64304.1| flagellar M-ring protein FliF [Brucella canis ATCC 23365]
          Length = 580

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 217/563 (38%), Positives = 327/563 (58%), Gaps = 9/563 (1%)

Query: 4   LDQLLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
             QL++  K     LG  +++ L  V    +   +    ++  P Y+ LYV L   DVNR
Sbjct: 10  FQQLIEQLKGTLGKLGARKLIALGLVGAALMSAILYMSIYLGRPSYETLYVGLSRDDVNR 69

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           + +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S GL
Sbjct: 70  MGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGL 128

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           TSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA   
Sbjct: 129 TSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGG 188

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEI 241
              +SA++IR LVAAAVP+LD   VTVLD+ G LL +A E        + S+ Q +   +
Sbjct: 189 FSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASHV 248

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           + +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  ++
Sbjct: 249 DDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNNR 308

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
            ++A  VEQN+P    +      S E TD++EE +NYE+N+K+++T  D Y ++RLSIAV
Sbjct: 309 NDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIAV 368

Query: 362 VVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           V+++ RL +  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL+    +
Sbjct: 369 VIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGAD 428

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA--KKGEVGGKS 478
              V   + D L R   +  NAL  L    L+ + GL  L R  N+  A  +        
Sbjct: 429 MEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAGE 488

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
           + +P  I  A + G      I   ++  D    S    S +   +   + LRL  MIE++
Sbjct: 489 VATPNFIGGAESVGEGVQAVIGGPAAYADQMKTS---LSDLRQRMRMPAKLRLEQMIEMD 545

Query: 539 EERFAKILRKWARSEIEDRYTQH 561
           EER A +L++W       R    
Sbjct: 546 EERVAAVLKQWIHETASGREADP 568


>gi|148558201|ref|YP_001258009.1| flagellar MS-ring protein [Brucella ovis ATCC 25840]
 gi|148369486|gb|ABQ62358.1| flagellar M-ring protein FliF [Brucella ovis ATCC 25840]
          Length = 568

 Score =  466 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 216/563 (38%), Positives = 328/563 (58%), Gaps = 11/563 (1%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +++QL     +   LG  +++ L  V    +   +    ++  P Y+ LYV L   DVNR
Sbjct: 1   MIEQLK---GTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVNR 57

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           + +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S GL
Sbjct: 58  MGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGL 116

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           TSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA   
Sbjct: 117 TSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGG 176

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEI 241
              +SA++IR LVAAAVP+LD   VTVLD+ G LL +A E        + S+ Q +   +
Sbjct: 177 FSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASHV 236

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           + +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  ++
Sbjct: 237 DDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNNR 296

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
            ++A  VEQN+P    +      S E TD++EE +NYE+N+K+++T  D Y ++RLSIAV
Sbjct: 297 NDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIAV 356

Query: 362 VVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           V+++ RL +  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL+    +
Sbjct: 357 VIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGAD 416

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA--KKGEVGGKS 478
              V   + D L R   +  NAL  L    L+ + GL  L R  N+  A  +        
Sbjct: 417 MEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAGE 476

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
           + +P  I  A + G      I   ++  D    S    S +   +   + LRL  MIE++
Sbjct: 477 VATPNFIGGAESVGEGVQAVIGGPAAYADQMKTS---LSDLRQRMRMPAKLRLEQMIEMD 533

Query: 539 EERFAKILRKWARSEIEDRYTQH 561
           EER A +L++W       R    
Sbjct: 534 EERVAAVLKQWIHETASGREADP 556


>gi|163757999|ref|ZP_02165087.1| flagellar M-ring protein [Hoeflea phototrophica DFL-43]
 gi|162284288|gb|EDQ34571.1| flagellar M-ring protein [Hoeflea phototrophica DFL-43]
          Length = 560

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 249/563 (44%), Positives = 364/563 (64%), Gaps = 11/563 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M++L+QL Q  K+  SLG+ R+L L  V    + L +AA  F+N P  + LY+ L   D+
Sbjct: 1   MSLLNQLSQIGKNLASLGQARMLTLGGVGAASVALIIAAALFLNKPARETLYIGLSGEDM 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +IS+ L+E+NIDF    +G+SI+VP+ M  +AR+ LA +GLP SS+ +GYELFDKV S 
Sbjct: 61  TQISLVLAESNIDFASGLDGNSITVPAGMTSRARMLLAERGLP-SSNTAGYELFDKVGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEIARTIQSI+GI AARVH+VM D G+FR+   +P+ASVM+R  
Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQSINGISAARVHLVMADRGNFRRGEQQPSASVMVRTG 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239
                ++A +IRHLVA++VP L++ +VTVLD+TG+LL T ++   + L +SLSIVQ +Q+
Sbjct: 180 TNLAPRTANSIRHLVASSVPGLNVDEVTVLDATGQLLATGDDFSNSNLNRSLSIVQLVQN 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           E+E NI KALA FLG++NFR++V A +N D+QQ++E ++DP+S+VERS R++++ Q S  
Sbjct: 240 EVETNIEKALAPFLGIENFRASVTATVNTDSQQVQETIFDPESRVERSTRVTRENQTSNQ 299

Query: 300 SQPESAVTVEQNMPHV--SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
           S  ++  TVEQN+P    +      P+S E  ++KEEQ+NYEIN+K I+T  ++Y +E L
Sbjct: 300 SATDTPATVEQNIPDQGPAAGGAAGPQSSELAERKEEQTNYEINSKVISTVRNSYTVEGL 359

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           S+AVVVN+ R+ ++ G +  + +  ++LAE+  +V+ A G++  RGD   IT MDF+ ++
Sbjct: 360 SVAVVVNRARIADMYGGAPTEEQTAAFLAEVQTLVNLAAGVDDERGDRANITVMDFMASE 419

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
           L  +   Q  F D L  H  T+INA+ F+   +L+   G   L  L     A++ E    
Sbjct: 420 LLTADAAQGGFGDTLKTHIGTIINAIAFITVAVLLIMFGFRPL--LGAGKTAEQAEDAVD 477

Query: 478 SILSPPPI---SSAVTTGLMPNDNIALD-SSNQDIFSHSRNLQSR-INSYVSKQSDLRLL 532
            I    P    ++    G MP +    D    +D  S     +S   N  V +  + RL 
Sbjct: 478 DIGLELPDFSPAAMGGPGAMPMEGFGADFGFGEDGDSELEMEESGSFNRRVKEGPERRLA 537

Query: 533 HMIEINEERFAKILRKWARSEIE 555
            M+EINEER AKILR+W+  E  
Sbjct: 538 RMVEINEERAAKILRQWSSGEAA 560


>gi|62317964|ref|YP_223817.1| flagellar MS-ring protein [Brucella abortus bv. 1 str. 9-941]
 gi|68067522|sp|O52069|FLIF_BRUAB RecName: Full=Flagellar M-ring protein
 gi|62198157|gb|AAX76456.1| FliF, flagellar M-ring protein [Brucella abortus bv. 1 str. 9-941]
          Length = 580

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 216/563 (38%), Positives = 326/563 (57%), Gaps = 9/563 (1%)

Query: 4   LDQLLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
             QL++  K     LG  +++ L  V    +   +    ++  P Y+ LYV L   DVNR
Sbjct: 10  FQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVNR 69

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           + +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S GL
Sbjct: 70  MGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGL 128

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           TSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA   
Sbjct: 129 TSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGG 188

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEI 241
              +SA++IR LVAAAVP+LD   VTVLD+ G LL +A E        + S+ Q +   +
Sbjct: 189 FSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASHV 248

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           + +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  ++
Sbjct: 249 DDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNNR 308

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
            ++A  VEQN+P    +      S E  D++EE +NYE+N+K+++T  D Y ++RLSIAV
Sbjct: 309 NDNATGVEQNIPQEQIQNRNGESSTEKMDRREELTNYEVNSKTVSTVSDGYSIKRLSIAV 368

Query: 362 VVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           V+++ RL +  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL+    +
Sbjct: 369 VIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGAD 428

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA--KKGEVGGKS 478
              V   + D L R   +  NAL  L    L+ + GL  L R  N+  A  +        
Sbjct: 429 MEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAGE 488

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
           + +P  I  A + G      I   ++  D    S    S +   +   + LRL  MIE++
Sbjct: 489 VATPNFIGGAESVGEGVQAVIGGPAAYADQMKTS---LSDLRQRMRMPAKLRLEQMIEMD 545

Query: 539 EERFAKILRKWARSEIEDRYTQH 561
           EER A +L++W       R    
Sbjct: 546 EERVAAVLKQWIHETASGREADP 568


>gi|122065185|sp|Q8YDM4|FLIF_BRUME RecName: Full=Flagellar M-ring protein
          Length = 580

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 216/563 (38%), Positives = 327/563 (58%), Gaps = 9/563 (1%)

Query: 4   LDQLLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
             QL++  K     LG  +++ L  V    +   +    ++  P Y+ LYV L   DVNR
Sbjct: 10  FQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVNR 69

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           + +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S GL
Sbjct: 70  MGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGL 128

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           TSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA   
Sbjct: 129 TSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGG 188

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEI 241
              +SA++IR LVAAAVP+LD   VTVLD+ G LL +A E        + S+ Q +   +
Sbjct: 189 FSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASHV 248

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           + +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  ++
Sbjct: 249 DDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNNR 308

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
            ++A  VEQN+P    +      S E TD++EE +NYE+N+ +++T  D Y ++RLSIAV
Sbjct: 309 NDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSMTVSTVSDGYSIKRLSIAV 368

Query: 362 VVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           V+++ RL +  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL++   +
Sbjct: 369 VIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDSAGAD 428

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA--KKGEVGGKS 478
              V   + D L R   +  NAL  L    L+ + GL  L R  N+  A  +        
Sbjct: 429 MEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAGE 488

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
           + +P  I  A + G      I   ++  D    S    S +   +   + LRL  MIE++
Sbjct: 489 VATPNFIGGAESVGEGVQAVIGGPAAYADQMKTS---LSDLRQRMRMPAKLRLEQMIEMD 545

Query: 539 EERFAKILRKWARSEIEDRYTQH 561
           EER A +L++W       R    
Sbjct: 546 EERVAAVLKQWIHETASGREADP 568


>gi|306845426|ref|ZP_07478000.1| flagellar M-ring protein FliF [Brucella sp. BO1]
 gi|306274169|gb|EFM55985.1| flagellar M-ring protein FliF [Brucella sp. BO1]
          Length = 575

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 216/563 (38%), Positives = 326/563 (57%), Gaps = 9/563 (1%)

Query: 4   LDQLLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
             QL++  K     LG  +++ L  V    +   +    ++  P Y+ LYV L   DVNR
Sbjct: 5   FQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVNR 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           + +AL EA+I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S GL
Sbjct: 65  MGLALGEADIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGL 123

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           TSFMQEIT VRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA   
Sbjct: 124 TSFMQEITHVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGG 183

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEI 241
              +SA++IR LVAAAVP+LD   VTVLD+ G LL +A E        + S+ Q +   +
Sbjct: 184 FSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALITASLEQQVASHV 243

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           + +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  ++
Sbjct: 244 DDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNNR 303

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
            ++A  VEQN+P    +      S E TD++EE +NYE+N+K+++T  D Y ++RLSIAV
Sbjct: 304 NDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIAV 363

Query: 362 VVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           V+++ RL +  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL+    +
Sbjct: 364 VIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNANRGDVINVTAVNFLDPAGAD 423

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA--KKGEVGGKS 478
              V   + D L R   +  NAL  L    L+ + GL  L R  N+  A  +        
Sbjct: 424 MEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAGE 483

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
           +  P  I  A + G      I   ++  D    S    S +   +   + LRL  MIE++
Sbjct: 484 VAMPNFIGGAESVGEGVQAVIGGPAAYADQMKTS---LSDLRQRMRMPAKLRLEQMIEMD 540

Query: 539 EERFAKILRKWARSEIEDRYTQH 561
           EER A +L++W       R    
Sbjct: 541 EERVAAVLKQWIHETASGREADP 563


>gi|239834433|ref|ZP_04682761.1| flagellar M-ring protein FliF [Ochrobactrum intermedium LMG 3301]
 gi|239822496|gb|EEQ94065.1| flagellar M-ring protein FliF [Ochrobactrum intermedium LMG 3301]
          Length = 590

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 213/566 (37%), Positives = 327/566 (57%), Gaps = 8/566 (1%)

Query: 4   LDQLLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
             QL++  K     LG  +++ L  V    +   +    +++ P Y+ LYV L   DVNR
Sbjct: 10  FQQLIEQLKGTLGKLGARKLVALGLVGAALMAAILYTSIYLSRPSYETLYVGLSRDDVNR 69

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           + +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S GL
Sbjct: 70  MGLALGEAGIPFDVKADGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGL 128

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           TSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA   
Sbjct: 129 TSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGG 188

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEI 241
              +SA++IR LVAAAVP+LD   VTVLD+ G+LL +A E        + S+ Q +   +
Sbjct: 189 FAAESAQSIRQLVAAAVPSLDASAVTVLDTNGRLLASAGEAANGAALMTASLEQQVAGNV 248

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           + +I KALA +LG+ +F+++V A L+ D +Q  E ++DP+S+VERS+R+ +++  S  ++
Sbjct: 249 DDSIRKALAPYLGMGHFQTSVQAVLDTDRRQTNETIFDPESRVERSVRVVRESGDSRNNR 308

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
            ++A  VEQN+P    +      S E TD++EE +NYE+N+K+++T  D Y ++RLSIAV
Sbjct: 309 NDNATGVEQNIPQEEIQNRNGESSSEKTDRREELTNYEMNSKTVSTVSDGYTVKRLSIAV 368

Query: 362 VVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           V+++ RL E  G +      +D  +A+I  +V+ A G+N+ RGD I +T+++FL+    +
Sbjct: 369 VIDQARLLETAGTTPPPANFVDQQIAKIRDLVATAAGLNADRGDVINVTAVNFLDPAGAD 428

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG----EVGG 476
              V   + D + R   + +NAL  L    L+ + GL  L R  N   A       E   
Sbjct: 429 MEPVSTPWTDTVLRQSGSYVNALAILAAVGLLIWFGLRPLLRDQNARTAGTEVAIRETSD 488

Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536
            +        +A           A+    +      +   S +   +   + LRL  MI+
Sbjct: 489 VAAPDFVGGQAAGEGVQGAQGVQAVIGGPEAYADQMKTSLSDLRQRMRMPAKLRLEQMID 548

Query: 537 INEERFAKILRKWARSEIEDRYTQHI 562
           ++EER A +L++W       R  Q +
Sbjct: 549 MDEERVAAVLKQWIHETAASREGQPL 574


>gi|260466610|ref|ZP_05812798.1| flagellar M-ring protein FliF [Mesorhizobium opportunistum WSM2075]
 gi|259029616|gb|EEW30904.1| flagellar M-ring protein FliF [Mesorhizobium opportunistum WSM2075]
          Length = 549

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 225/554 (40%), Positives = 329/554 (59%), Gaps = 7/554 (1%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           + +Q+     +    G  R+ +LA + ++ + +   A  ++N P YD LYV L+ SDVN+
Sbjct: 1   MPEQIQSIISNLRGFGVKRLAMLAGIAVLVMGVIGIASVYLNRPAYDTLYVGLDRSDVNQ 60

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I + L EA I F +  +G+S+ VP+    +AR+ LA +GLP+ S+N+GYELFD V + GL
Sbjct: 61  IGLVLGEAGIGFDVGADGTSVLVPAGTTAQARMLLAEKGLPT-SANAGYELFDNVGAMGL 119

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           TSFMQ+ITRVRALEGEIARTIQSI+GI AARVHIVM +  +FR+   +P+ASV+IR    
Sbjct: 120 TSFMQQITRVRALEGEIARTIQSIAGIKAARVHIVMSERANFRRDEQQPSASVVIRYAGI 179

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEI 241
              KSA +IRHLVAAAVP L    VTVLDS G LL A +   N    ++L + Q ++ +I
Sbjct: 180 DAEKSAMSIRHLVAAAVPGLSADKVTVLDSNGNLLAAGDDPSNTSAARTLGVEQTVEAQI 239

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
             NI +AL  +LG DNFR++V AE+N DT+Q  E ++DP+S+VERS++  +  + S   Q
Sbjct: 240 GDNIRRALTPYLGPDNFRASVKAEVNTDTRQTEETIFDPNSRVERSVQSVRANENSNQKQ 299

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
             +  +VEQN+P         P++    D+KEE +NYEIN+K IAT  + Y + ++SIAV
Sbjct: 300 ASTPASVEQNLPETQAASTEGPQTSSANDRKEEITNYEINSKKIATVSNGYTVTKMSIAV 359

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           VVN+ RL  +LG+ A   +I   +AEI K+VS+ATG + +RGD I +++++F++  L   
Sbjct: 360 VVNQDRLKTILGKDATPEQIAKRVAEIQKMVSSATGFDDKRGDVIDVSAVEFIDG-LDGE 418

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
              Q   +D + +H  T+INA  F+V   LV F GL  +             + G +   
Sbjct: 419 AVPQAGMLDSIGQHAGTLINAGAFIVVVFLVAFFGLRPMAAALTAKATPTPAISGPNFDE 478

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
                         N  +    S +   +   +L+ +I          RL  M++INEER
Sbjct: 479 VQRSLPTPEAAASANAAVGALPSARPGATPLDDLRQKIR----PAPQERLARMVDINEER 534

Query: 542 FAKILRKWARSEIE 555
            A+ILRKWA  E+ 
Sbjct: 535 TAQILRKWAAQEVA 548


>gi|153011515|ref|YP_001372729.1| flagellar MS-ring protein [Ochrobactrum anthropi ATCC 49188]
 gi|151563403|gb|ABS16900.1| flagellar M-ring protein FliF [Ochrobactrum anthropi ATCC 49188]
          Length = 579

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 219/563 (38%), Positives = 328/563 (58%), Gaps = 8/563 (1%)

Query: 4   LDQLLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
             QL++  K     LG  +++ L  V    +   +    +++ P Y+ LYV L   DVNR
Sbjct: 5   FQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLSRPSYETLYVGLSRDDVNR 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           + +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S GL
Sbjct: 65  MGLALGEAGIPFDVKADGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGL 123

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           TSFMQEITRVRALEGEIARTIQ+I G+ AARVHIVM + GSFR+   +P+ASV+IRA   
Sbjct: 124 TSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVMAEKGSFRRGDQKPSASVVIRAEGG 183

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEI 241
              +SA++IR LVAAAVP+LD   VTVLD+ G+LL +A E        + S+ Q +   +
Sbjct: 184 FAAESAQSIRQLVAAAVPSLDASAVTVLDTNGRLLASAGEAANGAALMTASLEQQVAGNV 243

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           + +I KALA +LG+ +F+++V A L+ D +QI E  YDP+S+VERS+R+ +++  S  ++
Sbjct: 244 DDSIRKALAPYLGIGHFQTSVQAVLDTDRRQINETTYDPESRVERSVRVVRESGDSRNNR 303

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
            ++A  VEQN+P    +      S E TD++EE +NYE+N+K+++T  D Y ++RLSIAV
Sbjct: 304 NDNATGVEQNIPQEEIQNRNGESSTEKTDRREELTNYEMNSKTVSTVSDGYTVKRLSIAV 363

Query: 362 VVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           V+++ RL E  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL+    +
Sbjct: 364 VIDQARLLETAGTTPPPANFVDQQITKIRDLVATAAGLNADRGDVINVTAVNFLDPAGAD 423

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK-KGEVGGKSI 479
              V   + D + R   + +NAL  L    L+ + GL  L R  N      +  V   S 
Sbjct: 424 MEPVSTPWTDTVLRQSGSYVNALAILAAVGLLIWFGLRPLLRDQNAKPTGTEVAVRETSE 483

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
           ++ P        G      I    +  D    S    S +   +   + LRL  MI+++E
Sbjct: 484 VAMPNFVGGQAAGEGVQAVIGGPEAYADQMKTS---LSDLRQRMRMPAKLRLEQMIDMDE 540

Query: 540 ERFAKILRKWARSEIEDRYTQHI 562
           ER A IL++W       R  Q +
Sbjct: 541 ERVASILKQWIHETAASREAQPL 563


>gi|158422251|ref|YP_001523543.1| flagellar MS-ring protein [Azorhizobium caulinodans ORS 571]
 gi|158329140|dbj|BAF86625.1| flagellar M-ring protein [Azorhizobium caulinodans ORS 571]
          Length = 559

 Score =  459 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 209/561 (37%), Positives = 312/561 (55%), Gaps = 13/561 (2%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M   +QL +   +   LG  R++ L  +    + +      +++ P  + LY  L   DV
Sbjct: 1   MNAREQLERLLSNLRQLGARRLVALGLIAFTVMAVIGLGAMYLSQPERETLYANLSRDDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            RI  AL +A I F +S +G+++ V  S   +AR+ LA +GLP SSS SGYELF+ V SF
Sbjct: 61  TRIGGALKDAGIPFDVSSDGATVLVAHSDTARARMLLAVKGLPQSSS-SGYELFNDVRSF 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+T+VRALEGEIARTIQ++ GI AARVHIV+PD GSFR+     TASV+IR  
Sbjct: 120 GLTSFMQEVTKVRALEGEIARTIQTMKGIKAARVHIVLPDRGSFRRDQQLATASVVIRTE 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS-LSIVQAIQH 239
           N +   +A+AIRHLVAAA+P + + +VTVL++ G +LT+ E           ++ Q +  
Sbjct: 180 NSADSSTAQAIRHLVAAAIPGMKLDNVTVLNTEGTILTSTEDGVTAAATRKSALQQQVNR 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           E E  I + L  FLG+ NF  +V + LN D   I E  YDP SK ERS R+ K+  +++ 
Sbjct: 240 ETEEKIRRTLTPFLGLGNFEVSVSSRLNTDRSTINETTYDPASKAERSTRVVKEQGQTQN 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
              +   TV+QN+P           + EN  ++EE +N+EI+T+   T  D Y +E LSI
Sbjct: 300 RSQQPNTTVQQNIPPPPGTPGTGTENNENNQRREELTNFEISTRQSQTVRDAYSVENLSI 359

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AV+VNK RLT       D   +++   EI ++VS+A G +  RGD + + ++ F +    
Sbjct: 360 AVLVNKERLTGTK----DGTPLETQTYEIEQLVSSAAGFDKERGDKLKVVAVPFADGGNN 415

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNIDDAKKGEVGGKS 478
                 +++ ++L R   T++NA+  LV  +L+ + GL   LR +    +  + E    +
Sbjct: 416 MEPIPPLTWSELLFRQAGTIVNAVTILVVAILLIWFGLRPALRAILARPEPDEAEAIEAA 475

Query: 479 ILSP----PPISSAVTTGLMPN--DNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
           +L+     PP +   +T   PN  D +   +      S   NL   + S V++    RL 
Sbjct: 476 MLAAPTELPPDTVLPSTAQNPNTLDGVTTLAGFTGGDSGPVNLIGDVTSKVNRSPQRRLE 535

Query: 533 HMIEINEERFAKILRKWARSE 553
            MIE +EE+ A ILR+W   E
Sbjct: 536 QMIEYDEEQAAAILRQWLHQE 556


>gi|170748099|ref|YP_001754359.1| flagellar MS-ring protein [Methylobacterium radiotolerans JCM 2831]
 gi|170654621|gb|ACB23676.1| flagellar M-ring protein FliF [Methylobacterium radiotolerans JCM
           2831]
          Length = 546

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 195/560 (34%), Positives = 310/560 (55%), Gaps = 17/560 (3%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M   + L + + +   LG  R++ L  V L   +      ++++ P  + LY  L   DV
Sbjct: 1   MPGREHLQKLWTNILDLGPRRLIALGLVGLTVFLAVGLGAYYLSRPLRETLYSGLSRDDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           +R+  AL +A I F IS +G+S+ V      +AR+ LA +GLP S   +GYELF+ + S 
Sbjct: 61  SRMGAALKDAGIPFDISADGTSVLVSYGQTAQARMLLAEKGLPQSGK-AGYELFNDLGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQ+ITRVRALEGEIARTIQ++  + AARVHIVMPD GSFR+     +ASV++R  
Sbjct: 120 GLTSFMQDITRVRALEGEIARTIQTLKSVKAARVHIVMPDPGSFRREQQPASASVVVRTE 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS-IVQAIQH 239
             +    A AIR LVAAA+P +    VTVL++ G +L A +         L+ + Q++  
Sbjct: 180 PANDATVAPAIRQLVAAAIPGMKPDKVTVLNTDGTVLLAGDDATTAPAGRLANLEQSVNR 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           EI+ NI + L  +LG +NF  +VVA LN D  +  E +++PD KVERS+R  K++  S+ 
Sbjct: 240 EIQDNIRRTLTPYLGPNNFEVSVVARLNTDKTKTDETIFNPDQKVERSLRTIKESDSSQN 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
             P+   T +QN+P    R      S   + ++EE +N+EI++K++ T  D Y ++ LS+
Sbjct: 300 RAPQKPTTAQQNLPDQRVRSEGAENSSAESQRREELTNFEISSKTVQTVSDGYSIKTLSV 359

Query: 360 AVVVNKGRLTEVLG--RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           AV+VN+ RL  + G  +      +D  +AEI ++V++A G+N  RGD + + ++ F++  
Sbjct: 360 AVLVNRSRLEALAGGAKGGTAPPLDPQVAEIEQLVTSAAGVNRARGDQLKVAAVSFIDEG 419

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
              +    + F D+L R   T+INA   L+   L+ + G   LR   N   A+  E G +
Sbjct: 420 QPLAPAPALGFTDVLMRQSGTLINAATILIVGCLLIWFG---LRPAVNAILARPAETGTE 476

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
             L+ P   S +             S+ +   S   +L   +  ++++    +L  ++E+
Sbjct: 477 LALATPDAGSGLDG----------PSAEKGGTSPEPSLIEDLTEHMARSPIRKLEQLVEL 526

Query: 538 NEERFAKILRKWARSEIEDR 557
           +EE+ A IL++W   E   R
Sbjct: 527 DEEQVANILKQWLTREEVAR 546


>gi|13472585|ref|NP_104152.1| flagellar MS-ring protein [Mesorhizobium loti MAFF303099]
 gi|14023331|dbj|BAB49938.1| flagellar basal-body MS-ring protein; FliF [Mesorhizobium loti
           MAFF303099]
          Length = 549

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 224/555 (40%), Positives = 328/555 (59%), Gaps = 9/555 (1%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           + +Q+     +    G  R+ +LA + ++ + +   A  ++N P YD LYV L+ +DVN+
Sbjct: 1   MPEQIQSIISNLRGFGVKRLAMLAGIAVLVMGVIGIASVYLNRPAYDTLYVGLDRADVNQ 60

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I + L EA I F +  +G+S+ VP+    +AR+ LA +GLP+ S+N+GYELFD V + GL
Sbjct: 61  IGLVLGEAGIGFDVGSDGTSVLVPAGTTAQARMLLAEKGLPT-SANAGYELFDNVGAMGL 119

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           TSFMQ+ITRVRALEGEIARTIQSISGI AARVHIVM +  +FR+   +P+ASV+IR    
Sbjct: 120 TSFMQQITRVRALEGEIARTIQSISGIKAARVHIVMSERANFRRDEQQPSASVVIRYAGI 179

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEI 241
              KSA++IRHLVAAAVP L    VTVLDS G LL A +   N    ++L + Q ++ +I
Sbjct: 180 DAEKSAQSIRHLVAAAVPGLSADKVTVLDSNGNLLAAGDDPSNTSAARTLGVEQTVEAQI 239

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
             NI +AL  +LG DNFR++V AE+N DT+Q  E ++DP+S+VERS++  +  + S   Q
Sbjct: 240 GDNIRRALTPYLGPDNFRASVKAEVNTDTRQTEETIFDPNSRVERSVQSVRANENSNQKQ 299

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
             +  +VEQN+P         P++    D+KEE +NYEIN+K IAT  + Y + ++SIAV
Sbjct: 300 ASTPASVEQNLPETQATSTEGPQTTSANDRKEEITNYEINSKKIATVSNGYTVTKMSIAV 359

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           VVN+ RL  +LG+ A   +I   +AEI K+V++ATG++ +RGD I +++++F++  L   
Sbjct: 360 VVNQDRLKTILGKDATPEQIAKRVAEIQKMVTSATGLDDKRGDVIDVSAVEFIDG-LDGE 418

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG-KSIL 480
              Q   +D + +H  T+INA  F+V   LV F GL  +                   + 
Sbjct: 419 AIPQAGMLDSIGQHAGTLINAGAFIVVVFLVAFFGLRPMAAALTARATPALSGPNFDEVQ 478

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
              P   A  +        AL  S         N    +   +      RL  M+++NEE
Sbjct: 479 RSLPTPEAAASADAGAAIGALPGSR-----PGTNPLDDLRQKIRPAPQERLARMVDLNEE 533

Query: 541 RFAKILRKWARSEIE 555
           R A+ILRKWA  E+ 
Sbjct: 534 RTAQILRKWAAQEVA 548


>gi|319781672|ref|YP_004141148.1| flagellar M-ring protein FliF [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167560|gb|ADV11098.1| flagellar M-ring protein FliF [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 548

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 227/554 (40%), Positives = 332/554 (59%), Gaps = 8/554 (1%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           + +Q+     +    G  R+ +LA + ++ + +   A  ++N P YD LYV L+ +DVN+
Sbjct: 1   MPEQIQSIISNLRGFGVKRLAMLAGIAVLVMGVIGIASVYLNRPAYDTLYVGLDRADVNQ 60

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I + L EA I F +  +G+S+ VP+    +AR+ LA +GLP+ S+N+GYELFD V S GL
Sbjct: 61  IGLVLGEAGIGFDVGADGTSVLVPAGTTAQARMLLAEKGLPT-SANAGYELFDNVGSLGL 119

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           TSFMQ+ITRVRALEGEIARTIQSISGI AARVHIVM +  +FR+   +P+ASV+IR    
Sbjct: 120 TSFMQQITRVRALEGEIARTIQSISGIKAARVHIVMSERANFRRDEQQPSASVVIRYAGI 179

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEI 241
              KSA +IRHLVAAAVP L    VTVLDS+G LL A +   N    ++L + Q ++ +I
Sbjct: 180 DAEKSAMSIRHLVAAAVPGLSADKVTVLDSSGNLLAAGDDPSNTSAARTLGVEQTVEAQI 239

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
             NI +AL A+LG DNFR++V AE+N DT+Q  E ++DP+S+VERS++  +  + +   Q
Sbjct: 240 GDNIRRALTAYLGPDNFRASVKAEVNTDTRQTEETIFDPNSRVERSVQSVRANENNNQKQ 299

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
             +  +VEQN+P         P+S    D++EE +NYEIN+K IAT  + Y + ++SIAV
Sbjct: 300 ASTPASVEQNLPETQATATDGPQSSSQNDRREEITNYEINSKKIATVSNGYTVTKMSIAV 359

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           VVN+ RLT +LG+ A   +I   +AEI K+V++ATG++ +RGD I +++++F++  L   
Sbjct: 360 VVNQQRLTTILGKDATPEQIAKRVAEIQKMVTSATGLDEKRGDIIDVSAVEFIDG-LDGE 418

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
              Q   +D + +H  T+INA  F+V   LV F G   LR +     AK           
Sbjct: 419 AIPQAGMLDSIGQHAGTMINAGAFIVVVFLVAFFG---LRPMAAALTAKAAPALAGPSFD 475

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
               S      +   DN A+ +               +   +      RL  M+++NEER
Sbjct: 476 DVQRSLPTPEAMAATDNAAVGALPG--TRPGPTPLDDLRQKIRPAPQDRLARMVDLNEER 533

Query: 542 FAKILRKWARSEIE 555
            A+ILRKWA  E+ 
Sbjct: 534 TAQILRKWASQEVA 547


>gi|296447983|ref|ZP_06889889.1| flagellar M-ring protein FliF [Methylosinus trichosporium OB3b]
 gi|296254493|gb|EFH01614.1| flagellar M-ring protein FliF [Methylosinus trichosporium OB3b]
          Length = 551

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 193/555 (34%), Positives = 316/555 (56%), Gaps = 8/555 (1%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +D+  Q   +   LG  ++  LA +  + + +     ++V+ P ++ LY  L+  DV+RI
Sbjct: 1   MDRFNQLRDNLIGLGPRKLSALALIFTLVLAITGLGAYYVSRPDFEVLYSGLDREDVSRI 60

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L  + + F I+  G+++ V      +AR+ LA +GLP  S+N+GYELFDKV S GLT
Sbjct: 61  GAVLKSSGVAFDINPEGNAVLVRYGQTAQARMLLAERGLPQ-SANAGYELFDKVGSLGLT 119

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
           SFMQE+TRVRALEGE+ARTIQ I G+ AARVHIV+PD GSFR++   P+ASV+IR  +P 
Sbjct: 120 SFMQEVTRVRALEGELARTIQLIRGVKAARVHIVLPDEGSFRRVRQPPSASVVIRTESPD 179

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHEI 241
             K+A+AIRHLVAA++P + +  VTVL++ G LL+A++ +       K+L++ + +  +I
Sbjct: 180 DSKAAQAIRHLVAASIPGMTVDQVTVLNTDGMLLSASDGDATDAAPAKTLTLEKTVSKDI 239

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           + NI + L  +L + NF+ +V A +N D +Q  E ++DP+S+VERS+R+ K+   S+ + 
Sbjct: 240 QDNIRRTLTPYLRLANFQVSVRARINTDRKQTNETIFDPESRVERSVRVVKENSTSQNNS 299

Query: 302 PESAVTVEQNMPHVSDRKVPLP-RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
              A +VE+N+P    +      +S +   K EE +N+E++TK++ T    Y LE LSIA
Sbjct: 300 TSQAASVERNVPQEKPQAGGEGKQSNDENKKSEELTNFELSTKTVTTVSGGYTLENLSIA 359

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           V+VN+G L      +     ++  L EI ++V++A G+   RGDT+ ++++DF  N+   
Sbjct: 360 VLVNRGSLAGSGKDAPKPEALERQLKEIEQLVASAAGVRKDRGDTVKVSAVDFAINENDL 419

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
           +      + + L+    +VINA   ++ TLL+ F GL    R    +     E    +  
Sbjct: 420 APVEPAGWSEALTHQLGSVINAGALILVTLLLVFFGLRPASRALLAEAPAPMETA-LADD 478

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
             PP+  A  +  +P   + +      + +    L   I          +L  +IE +E 
Sbjct: 479 VGPPLLGAEPSIELPFAPMEMPQFTGQMDT---GLIEDIGGREKFNQQKKLEQLIEADEM 535

Query: 541 RFAKILRKWARSEIE 555
           + A IL++W  +E  
Sbjct: 536 QAAAILKQWMYAEGS 550


>gi|188579876|ref|YP_001923321.1| flagellar MS-ring protein [Methylobacterium populi BJ001]
 gi|179343374|gb|ACB78786.1| flagellar M-ring protein FliF [Methylobacterium populi BJ001]
          Length = 570

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 190/570 (33%), Positives = 313/570 (54%), Gaps = 18/570 (3%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M   +Q  + + +   LG  R++ L  V L+  +      ++++ P  + LY  L   DV
Sbjct: 1   MFGREQAERLWSNIVDLGARRLIALGLVGLLVFLGVGIGAYYLSRPAQETLYTGLSREDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           +RI   L +  I F +S +G+++ V      +AR+ LA +GLP SS  SGYELF+ + S 
Sbjct: 61  SRIGGVLKDNGIPFDVSSDGTAVLVSFGHTAQARMLLAEKGLPQSSK-SGYELFNDLGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           G+TSFMQE+TRVRALEGEIARTIQ + G+ AARVH+V+PD GSFR+     +ASV++R  
Sbjct: 120 GMTSFMQEVTRVRALEGEIARTIQGMKGVRAARVHLVLPDRGSFRRDQQPASASVVVRTE 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK-LLTANEMERNILGKSLSIVQAIQH 239
                  A+AIR LVA+A+P +    VTV+ S G  LL  ++      GK  ++ +++  
Sbjct: 180 PADDVSGAQAIRQLVASAIPGMKPDRVTVIGSEGTVLLAGDDAGTAPTGKMATLEKSVSR 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           E++ NI + L+ +LGV NF  +V  +LN D     E +Y+PD +VERS+R  ++++ ++ 
Sbjct: 240 EMQDNIRRTLSPYLGVGNFEVSVATQLNTDKTSTNETIYNPDQRVERSVRSVRESENAQN 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
              +   + ++N+P    R     +S   + KKE+ +NYEI+ K++ T  D Y + RLS+
Sbjct: 300 RNSQRPTSAQENLPDQRTRSDGNDQSSNESSKKEDLTNYEISQKTVQTVSDGYAIRRLSV 359

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AV+VN+ RLT + G   D+  +D  +AEI ++V +A G +  RGDTI + ++ F+ +   
Sbjct: 360 AVLVNRSRLTALAGPD-DKAALDKQIAEIEELVGSAAGFSKERGDTIKVAAVGFVNDGQP 418

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNIDDAKKGEVGGKS 478
                 +S  D++ +   T+INA   LV   L+ + GL   LR +    +A + EV   +
Sbjct: 419 LEPVPPLSLTDVMMKQSGTLINAATILVVAGLLIWFGLRPALRAILATPEAAQSEVAALA 478

Query: 479 ILSPPPI-SSAVTTGLMPNDNIALDSSNQDI-------------FSHSRNLQSRINSYVS 524
                P  ++ + +GL  + N+AL +    +                   L   +   ++
Sbjct: 479 GPEGAPALAAGMASGLAADGNMALAAPGTALPGAVGAGEAAKLPAPGVAGLLEELEDKMA 538

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEI 554
           +    RL  +I+I+EE+ A +L++W   E 
Sbjct: 539 RSPQKRLEQLIDIDEEQVAAVLKRWLMREE 568


>gi|182679604|ref|YP_001833750.1| flagellar MS-ring protein [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|182635487|gb|ACB96261.1| flagellar M-ring protein FliF [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 547

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 195/556 (35%), Positives = 308/556 (55%), Gaps = 11/556 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M + +Q+ + + +   LG  R++ LA V +    +   A +F++ P  + LY  L+  DV
Sbjct: 1   MTVREQIERLWANLLKLGTKRLITLAVVGVSVFAMTGLAGYFLSRPALEVLYSGLDRQDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           +RI+ AL EA+I F ++ +G+S+ V      +AR+ LA +GLP +S N+G ELFDK+ S 
Sbjct: 61  SRIASALKEADIPFDVNADGNSVLVRFGETARARMLLAEKGLP-NSPNAGNELFDKLGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGE+ARTIQ + G+ AARVHIVMPD GSFR+    P+ASV++R  
Sbjct: 120 GLTSFMQEVTRVRALEGELARTIQLMHGVKAARVHIVMPDEGSFRRTRQPPSASVVVRME 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239
           +     +A+AIRHLVA+AVP + + +VTVL++ G LL +  +         + + +A+  
Sbjct: 180 SNDDPSAAKAIRHLVASAVPGMTVEEVTVLNTEGVLLASGADTVDGAPSGMIMLEKAVSR 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           EI  NI K L  +LG+ NF+ +V A LN D +Q  E +Y+PDSKVERSI +++  Q S+ 
Sbjct: 240 EIIDNIRKTLTPYLGLRNFQISVAARLNTDKRQTNETIYNPDSKVERSIHVTRQNQNSQN 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           S  +S  +VE+N+P  + R     +S E + K++E +NYEI++K + T    Y ++ LS+
Sbjct: 300 STVQSPTSVERNLPQENARSDDGKQSTEESQKRDELTNYEISSKVVNTVSGGYGIDNLSV 359

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AV+VN+  L   LG       +   + EI  +V++A G +  RGD + I+++DF++    
Sbjct: 360 AVLVNRASLISSLGEKPTPDALAKQMNEIEMLVASAAGAHKERGDIVKISAVDFIDPSHE 419

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
                  S  ++  R    ++NA   LV  +L+ + GL           A K  +     
Sbjct: 420 LEPQPPPSIGEMFLRQSTNLVNAATILVVAILLIWFGLRP---------ATKAILANTRS 470

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
            +               D+ A  +          NL   + S        RL  ++E +E
Sbjct: 471 TATAIDLRDEEEFQALEDDDAPPALPVWSPPSEPNLIEDLTSTPRHTPQKRLEQIVEYDE 530

Query: 540 ERFAKILRKWARSEIE 555
           ++ A +L++W     E
Sbjct: 531 QQAAAVLKQWIHQGEE 546


>gi|288960029|ref|YP_003450369.1| flagellar M-ring protein [Azospirillum sp. B510]
 gi|288912337|dbj|BAI73825.1| flagellar M-ring protein [Azospirillum sp. B510]
          Length = 553

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 160/553 (28%), Positives = 279/553 (50%), Gaps = 11/553 (1%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
              ++  +LG  R+  +  V L+ I  F+     +++P  + LY +L+ ++   I+  L 
Sbjct: 3   NLLQTLRNLGPARLAAIGGVGLLLIGFFVYLTTRLSTPEMELLYAELQPTEAAAIAKKLE 62

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
           EA + F +  +G+ I VP+  VG  R+ +AAQGLP S  + GYELFDK   FG TSFMQ 
Sbjct: 63  EAKVPFSVDKSGTKIMVPADQVGPMRMRMAAQGLP-SGGSVGYELFDKGEGFGATSFMQN 121

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYK 186
           I  +RALEGE+ART+Q+++G+  ARVH+V+P    F +     TASV ++         +
Sbjct: 122 INHLRALEGEMARTVQTLNGVQQARVHLVLPKRELFARQQNPATASVFLKLRPGAQLSRE 181

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQAIQHEIEM 243
           + +AI+ L+AA+VPNLD   ++++D  GKLL   T ++    ++  +    QA +  +  
Sbjct: 182 NIQAIQQLIAASVPNLDPNRISIVDDKGKLLARGTGSDTAEAMMASAEEKKQAYEGRLAR 241

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            I   L   LG    R+ V A+L+ D    +  ++DPDS+V RS +   ++  S    P 
Sbjct: 242 TIEDLLGRTLGYGKVRAEVSADLDFDRITTQSEIFDPDSQVVRSTQTVNESNESSDRDPL 301

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
           + VTV+QN+P         P S   +++ EE  NYEI   + +   ++ ++ RLS+AV+V
Sbjct: 302 APVTVDQNLPTAQSSSSASPLSSNKSNRAEETINYEITKTTKSHVRESGQVRRLSVAVLV 361

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           +           A Q + D  +  I  +V +A G+++ RGD++ + +M F   +      
Sbjct: 362 DGTYQLSKDAPPAYQPRSDQEIESIKALVRSAVGLDAVRGDSLEVINMRFWSPEDDIQKP 421

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL--RRLHNIDDAKKGEVGG-KSIL 480
            ++ FM +       +   +V  +  +L+  L +  L  R     +  ++ E+    +  
Sbjct: 422 DEL-FMGMTKDDLFRIAEMVVLGIVAVLIILLVIRPLIARAFEKAEMQEEDEMDRLLTDQ 480

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
           +  P + A  TG +  D +AL+++  D         +R+   V   S  ++  +++ + E
Sbjct: 481 AGMPAALAAPTGALAQD-LALEAAQADEELEQMIDINRVEGRVRASSLRKVGEIVDKHPE 539

Query: 541 RFAKILRKWARSE 553
               ILR W   E
Sbjct: 540 EAVSILRNWLYQE 552


>gi|319898649|ref|YP_004158742.1| flagellar M-ring protein [Bartonella clarridgeiae 73]
 gi|319402613|emb|CBI76158.1| Flagellar M-ring protein [Bartonella clarridgeiae 73]
          Length = 557

 Score =  452 bits (1162), Expect = e-125,   Method: Composition-based stats.
 Identities = 212/558 (37%), Positives = 331/558 (59%), Gaps = 14/558 (2%)

Query: 3   ILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           ++D+ L F  S       LG  R++ L  + L      + + F++  P Y+ LYV L   
Sbjct: 1   MIDKFLAFLSSSGNALHKLGAKRLIALGIIGLTLFGTILFSSFYLTRPVYETLYVGLSRD 60

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
           DVNR+ +AL E  I F +S +GS++ VP     +AR+ LA +GLP+S+ N+GYELFD + 
Sbjct: 61  DVNRMGMALGEVGIAFDVSADGSTVQVPVGQAEQARMFLAEKGLPTSN-NAGYELFDNMG 119

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178
           S GLTSFMQEITR RALEGEIARTIQ + G+ AARVHIV+PD GSFRK   +PTASV+IR
Sbjct: 120 SLGLTSFMQEITRQRALEGEIARTIQVVQGVKAARVHIVLPDKGSFRKANQKPTASVVIR 179

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL-SIVQAI 237
                  +SA++IR LVAAAVP+L+   VTV+D+ G+LL +     N     + S+ Q +
Sbjct: 180 TNGGFAVESAQSIRQLVAAAVPSLEASSVTVMDTRGQLLASGVDAMNGTSMMMASLEQQV 239

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
             +I+ NI K L  +LG+D+F+++V   L+ D +Q  E V+DP+S+V RS+R  +D   S
Sbjct: 240 ASQIDANIRKQLVPYLGLDHFQTSVQVVLDTDRRQTNETVFDPESQVVRSVRSVRDQADS 299

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
           + ++   AV VEQN+P          RS +  D++EE +NYEIN+K+I+T  D Y +++L
Sbjct: 300 QNNRNSDAVGVEQNIPQEEIANGSGERSTDKKDRREETTNYEINSKTISTVSDGYSVKKL 359

Query: 358 SIAVVVNKGRLTEVLG-RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           ++A+VV++ RLT     +   +  ++  +  I ++V+ A G++ +RGD I +T++DF+ +
Sbjct: 360 AVAIVVDRARLTLPDSTKPTSESALNEEINRIQQMVATAAGLDPKRGDIINVTAVDFIGH 419

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476
              +   VQ+    +LSR+ + +IN +  ++  LL+ FLG+  L R   + + KK     
Sbjct: 420 TESDMIPVQMPLWKLLSRYTSALINGVALVIAVLLILFLGVRPLMR--EMREGKKALENS 477

Query: 477 KSILSPPPISSAVTTGLMPNDNIA-LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
           K+ ++      A+      N   + +  ++ D      NL++R+          RL  MI
Sbjct: 478 KNAMADLENIPALEHQYQANAEFSGITGTSDDTHDALHNLRNRMRVP----PQNRLEQMI 533

Query: 536 EINEERFAKILRKWARSE 553
            ++EERFA +LR+W    
Sbjct: 534 AMDEERFAGVLREWINDT 551


>gi|78067882|ref|YP_370651.1| flagellar MS-ring protein [Burkholderia sp. 383]
 gi|77968627|gb|ABB10007.1| Flagellar FliF M-ring protein [Burkholderia sp. 383]
          Length = 587

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 135/562 (24%), Positives = 232/562 (41%), Gaps = 35/562 (6%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
             +     + +     L     +   + +  A   +  +P Y  LY  L   D   I  A
Sbjct: 45  FAERIPGISRMKGNPKLPFLIAVAFAVAVITALVLWSRAPDYRVLYSNLSDRDGGAIIAA 104

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L +AN+ ++ +D G +I VPS+ V + R+ LAA GLP   S  G+EL D    FG++ F 
Sbjct: 105 LQQANVPYKFADAGGAILVPSNQVHETRLKLAAMGLPKGGS-VGFELMD-NQKFGISQFA 162

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
           ++I   RALEGE+ RTI+SI+ +  ARVH+ +P    F +    P+ASV +      V  
Sbjct: 163 EQINYQRALEGELQRTIESINAVRGARVHLAIPKPSVFVRDKEAPSASVFVDLYPGRVLD 222

Query: 187 --SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN 244
               +AI  +V++ VP++   +VT++D  G LLT       +    L  VQ ++H  +  
Sbjct: 223 EGQVQAITRMVSSGVPDMPAKNVTIVDQDGNLLTQTASASGLDASQLKYVQQVEHNTQKR 282

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           I+  LA   G  N RS V A+L+    +     Y P+   ++S   S+    +       
Sbjct: 283 IDAILAPIFGTGNARSQVSADLDFSKIEQTSESYGPNGNPQQSAIRSQQTSSATELAQGG 342

Query: 305 AVTVE---QNMPH-------VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
           A  V     N P        V+      P++   +D+K++ +NYE++            +
Sbjct: 343 ASGVPGALSNTPPQPASAPIVAGNGQNAPQTTPVSDRKDQTTNYEVDKTIRHLEQPMGSV 402

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           +RLS+AVVVN   + +  G    Q    + LA++ ++V  A G + +RGD++ + +  F 
Sbjct: 403 KRLSVAVVVNYQPVADAKGHVTMQPLPPAKLAQVEQLVKDAMGYDEKRGDSVNVVNSAFS 462

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
                 +        D+++          +      L       A+RR            
Sbjct: 463 TVSDPYADLPWWRQPDMIAMAKEAAKWLGIAAAAAALYFMFVRPAMRR------------ 510

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL--- 531
                 + PP          P D++ALD       S   +           + +  L   
Sbjct: 511 ------AFPPPEPVAPALAAPEDSVALDGLPGPEKSEEPDALLLGFESEKNRYERNLDYA 564

Query: 532 LHMIEINEERFAKILRKWARSE 553
             +   + +  A +++ W   E
Sbjct: 565 RTIARQDPKIVATVVKNWVSDE 586


>gi|240137205|ref|YP_002961674.1| Flagellar M-ring protein FliF [Methylobacterium extorquens AM1]
 gi|240007171|gb|ACS38397.1| Flagellar M-ring protein FliF [Methylobacterium extorquens AM1]
          Length = 559

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 190/560 (33%), Positives = 308/560 (55%), Gaps = 7/560 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M   +Q  + + +   LG  R++ L  V L+  +      ++++ P  + LY  L   DV
Sbjct: 1   MFGREQAERLWSNIVDLGARRLIALGLVGLLVFLGVGVGAYYLSRPAQEMLYTGLSREDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           +RI   L +  I F +S +G+++ V      +AR+ LA +GLP SS  SGYELF+ + S 
Sbjct: 61  SRIGGVLKDNGIPFDVSSDGTAVLVSFGHTAQARMLLAEKGLPQSSK-SGYELFNDLGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           G+TSFMQE+TRVRALEGEIARTIQ + G+ AARVH+V+PD GSFR+     +ASV++R  
Sbjct: 120 GMTSFMQEVTRVRALEGEIARTIQGMKGVRAARVHLVLPDRGSFRRDQQPASASVVVRTE 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK-LLTANEMERNILGKSLSIVQAIQH 239
                  A+AIR LVA+A+P +    VTV+ S G  LL  ++      GK  ++ +++  
Sbjct: 180 PADDTSGAQAIRQLVASAIPGMKPDRVTVIGSEGTVLLAGDDAGTAPTGKMATLEKSVSR 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           E++ NI + LA +LGV NF  +V  +LN D     E +++PD +VERS+R  ++++ ++ 
Sbjct: 240 EMQDNIRRTLAPYLGVGNFEISVATQLNTDKTSTNETIFNPDQRVERSVRSVRESENAQN 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
              +   + ++N+P    R     +S   + KKE+ +NYEI+ K++ T  D Y + RLS+
Sbjct: 300 RNSQRPTSAQENLPDQRTRSDGNDQSSNESSKKEDLTNYEISQKTVQTVSDGYAIRRLSV 359

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AV+VN+ RLT + G   D+  +D  +AEI ++V +A G +  RGDTI + ++ F+ +   
Sbjct: 360 AVLVNRSRLTALAGPD-DKASLDKQIAEIEELVGSAAGFSKERGDTIKVAAVGFVNDGQP 418

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNIDDAKKGEVGGKS 478
                 +S  D++ +   T+INA   LV   L+ + GL   LR +    +  + EV   +
Sbjct: 419 MEPVPPLSLTDVMMKQSGTLINAATILVVAGLLIWFGLRPALRAILATPETAQSEVAALA 478

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR---NLQSRINSYVSKQSDLRLLHMI 535
                P  +A  T  +     AL  S +     S     L   +   +++    RL  +I
Sbjct: 479 GPEGAPALAADGTMALAAPGAALPGSGEAAKLPSPGVAGLLEELEDKMARSPQKRLEQLI 538

Query: 536 EINEERFAKILRKWARSEIE 555
           +I+EE+ A +L++W   E  
Sbjct: 539 DIDEEQVAAVLKRWLMREEA 558


>gi|170696757|ref|ZP_02887869.1| flagellar M-ring protein FliF [Burkholderia graminis C4D1M]
 gi|170138336|gb|EDT06552.1| flagellar M-ring protein FliF [Burkholderia graminis C4D1M]
          Length = 600

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 143/565 (25%), Positives = 250/565 (44%), Gaps = 33/565 (5%)

Query: 9   QFFKSGTSLGRTR---ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
            F +  + L + R      L   + + + +      +  +P Y  LY  L   D   I  
Sbjct: 48  NFGQRLSGLAQMRGNPRAPLIFAVALLVAIVAGLFLWSRAPDYKVLYSNLSDRDGGAIIT 107

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
           AL +ANI ++ S+ G +I VPS  V + R+ LA+QGLP S S  G+EL D    FG++ F
Sbjct: 108 ALQQANIPYKFSEAGGAILVPSEQVHEMRLRLASQGLPKSGS-VGFELMD-NQKFGISQF 165

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
            ++I   RALEGE+ RTI+S+S + +ARVH+ +P    F +    P+ASV++        
Sbjct: 166 AEQINYQRALEGELERTIESVSSVKSARVHLAIPKPSVFVRDKEAPSASVLVNLYPGRAL 225

Query: 186 KSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEM 243
              +  AI H+V++AVP + +  VT+LD  G LLT   +   +    L   Q I+   + 
Sbjct: 226 DEGQVLAITHMVSSAVPEMPVKGVTILDQDGNLLTQPSVGGGLDASQLKYRQQIERSTQQ 285

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSE- 298
            I+  LA   G  N  S V A+++    +     Y P+        RS + S   + S+ 
Sbjct: 286 RIDAILAPLFGSGNAHSQVSADIDFSRSEQTSENYGPNGNPQQAAIRSQQSSTATEMSQG 345

Query: 299 ---------TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
                    ++QP    +   N P  +   V    +   +D+K+  +NYE++        
Sbjct: 346 GASGVPGALSNQPPQPASAPINAPAGASGGV---TTTPVSDRKDMTTNYELDKTVRHLEQ 402

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
               ++RLS+AVVVN  R+ +  G +  Q      LA++N++V  A G +++RGD++ + 
Sbjct: 403 PMGGIKRLSVAVVVNYLRVVDAKGHATMQPVTADKLAQVNQLVKDAMGFDAQRGDSVNVV 462

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
           +  F      N+        D+L+ +        +  V   L   +   ALRR     + 
Sbjct: 463 NSPFTTALDPNADLPWWRTPDMLALYKQIATYLGIGAVALFLYFVMVKPALRRAFPPPEP 522

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
                   +   P P    +  G+   +     ++  ++ +    LQ+  N+    + +L
Sbjct: 523 ------VVAAALPSPDEPILLDGIPAAER--AGNAALEMDNGDAELQALENAKHKYERNL 574

Query: 530 RLLH-MIEINEERFAKILRKWARSE 553
                +   + +  A +++ W   E
Sbjct: 575 EFARSIARQDPKIVATVVKNWVTDE 599


>gi|163850071|ref|YP_001638114.1| flagellar MS-ring protein [Methylobacterium extorquens PA1]
 gi|163661676|gb|ABY29043.1| flagellar M-ring protein FliF [Methylobacterium extorquens PA1]
          Length = 559

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 189/560 (33%), Positives = 308/560 (55%), Gaps = 7/560 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M   +Q  + + +   LG  R++ L  V L+  +      ++++ P  + LY  L   DV
Sbjct: 1   MFGREQAERLWSNIVDLGARRLIALGLVGLLVFLGVGVGAYYLSRPAQEMLYTGLSREDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           +RI   L +  I F +S +G+++ V      +AR+ LA +GLP SS  SGYELF+ + S 
Sbjct: 61  SRIGGVLKDNGIPFDVSSDGTAVLVSFGHTAQARMLLAEKGLPQSSK-SGYELFNDLGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           G+TSFMQE+TRVRALEGEIARTIQ + G+ AARVH+V+PD GSFR+     +ASV++R  
Sbjct: 120 GMTSFMQEVTRVRALEGEIARTIQGMKGVRAARVHLVLPDRGSFRRDQQPASASVVVRTE 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK-LLTANEMERNILGKSLSIVQAIQH 239
                  A+AIR LVA+A+P +    VTV+ S G  LL  ++      GK  ++ +++  
Sbjct: 180 PADDTSGAQAIRQLVASAIPGMKPDRVTVIGSEGTVLLAGDDAGTAPTGKMATLEKSVSR 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           E++ NI + LA +LGV NF  +V  +LN D     E +++PD +VERS+R  ++++ ++ 
Sbjct: 240 EMQDNIRRTLAPYLGVGNFEISVATQLNTDKTSTNETIFNPDQRVERSVRSVRESENAQN 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
              +   + ++N+P    R     +S   + KKE+ +NYEI+ K++ T  D Y + RLS+
Sbjct: 300 RNSQRPTSAQENLPDQRTRSDGNDQSSNESSKKEDLTNYEISQKTVQTVSDGYAIRRLSV 359

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AV+VN+ RLT + G   D+  +D  +AEI ++V +A G +  RGDTI + ++ F+ +   
Sbjct: 360 AVLVNRSRLTALAGPD-DKASLDKQIAEIEELVGSAAGFSKERGDTIKVAAVGFVNDGQP 418

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNIDDAKKGEVGGKS 478
                 +S  D++ +   T+INA   LV   L+ + GL   LR +    +  + EV   +
Sbjct: 419 MEPVPPLSLTDVMMKQSGTLINAATILVVAGLLIWFGLRPALRAILATPETAQSEVAALA 478

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR---NLQSRINSYVSKQSDLRLLHMI 535
                P  +A  T  +     AL  S +     +     L   +   +++    RL  +I
Sbjct: 479 GPEGAPALAADGTMALAAPGAALPGSGEAAKLPAPGIAGLLEELEDKMARSPQKRLEQLI 538

Query: 536 EINEERFAKILRKWARSEIE 555
           +I+EE+ A +L++W   E  
Sbjct: 539 DIDEEQVAAVLKRWLMREEA 558


>gi|218528674|ref|YP_002419490.1| flagellar MS-ring protein [Methylobacterium chloromethanicum CM4]
 gi|218520977|gb|ACK81562.1| flagellar M-ring protein FliF [Methylobacterium chloromethanicum
           CM4]
          Length = 559

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 189/560 (33%), Positives = 308/560 (55%), Gaps = 7/560 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M   +Q  + + +   LG  R++ L  V L+  +      ++++ P  + LY  L   DV
Sbjct: 1   MFGREQAERLWSNIVDLGARRLIALGLVGLLVFLGVGVGAYYLSRPAQEMLYTGLSREDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           +RI   L +  I F +S +G+++ V      +AR+ LA +GLP SS  SGYELF+ + S 
Sbjct: 61  SRIGGVLKDNGIPFDVSSDGTAVLVSFGHTAQARMLLAEKGLPQSSK-SGYELFNDLGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           G+TSFMQE+TRVRALEGEIARTIQ + G+ AARVH+V+PD GSFR+     +ASV++R  
Sbjct: 120 GMTSFMQEVTRVRALEGEIARTIQGMKGVRAARVHLVLPDRGSFRRDQQPASASVVVRTE 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK-LLTANEMERNILGKSLSIVQAIQH 239
                  A+AIR LVA+A+P +    VTV+ S G  LL  ++      GK  ++ +++  
Sbjct: 180 PADDTSGAQAIRQLVASAIPGMKPDRVTVIGSEGTVLLAGDDAGTAPTGKMATLEKSVSR 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           E++ NI + LA +LGV NF  +V  +LN D     E +++PD +VERS+R  ++++ ++ 
Sbjct: 240 EMQDNIRRTLAPYLGVGNFEISVATQLNTDKTSTNETIFNPDQRVERSVRSVRESENAQN 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
              +   + ++N+P    R     +S   + KKE+ +NYEI+ K++ T  D Y + RLS+
Sbjct: 300 RNSQRPTSAQENLPDQRTRSDGNDQSSNESSKKEDLTNYEISQKTVQTVSDGYAIRRLSV 359

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AV+VN+ RLT + G   D+  +D  +AEI ++V +A G +  RGDTI + ++ F+ +   
Sbjct: 360 AVLVNRSRLTALAGPD-DKASLDKQIAEIEELVGSAAGFSKERGDTIKVAAVGFVNDGQP 418

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNIDDAKKGEVGGKS 478
                 +S  D++ +   T+INA   LV   L+ + GL   LR +    +  + EV   +
Sbjct: 419 MEPVPPLSLTDVMMKQSGTLINAATILVVAGLLIWFGLRPALRAILATPETAQSEVAALA 478

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR---NLQSRINSYVSKQSDLRLLHMI 535
                P  +A  T  +     AL  S +     +     L   +   +++    RL  +I
Sbjct: 479 GPEGAPALAADGTMALAAPGAALPGSGEAAKLPAPGVAGLLEELEDKMARSPQKRLEQLI 538

Query: 536 EINEERFAKILRKWARSEIE 555
           +I+EE+ A +L++W   E  
Sbjct: 539 DIDEEQVAAVLKRWLMREEA 558


>gi|306841269|ref|ZP_07473980.1| flagellar M-ring protein FliF [Brucella sp. BO2]
 gi|306288671|gb|EFM60002.1| flagellar M-ring protein FliF [Brucella sp. BO2]
          Length = 542

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 211/533 (39%), Positives = 316/533 (59%), Gaps = 8/533 (1%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92
           +   +    ++  P Y+ LYV L   DVNR+ +AL EA I F +  +GSSI VP      
Sbjct: 2   MGAILYTSIYLGRPSYETLYVGLSRDDVNRMGLALGEAGIPFDVKSDGSSILVPIGKAEN 61

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
           AR++LA +GLP+S+ N+GYELFD + S GLTSFMQEITRVRALEGEIARTIQ+I G+ AA
Sbjct: 62  ARMYLAEKGLPTSN-NAGYELFDNMGSLGLTSFMQEITRVRALEGEIARTIQAIRGVKAA 120

Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDS 212
           RVHIV+ + GSFR+   +P+ASV+IRA      +SA++IR LVAAAVP+LD   VTVLD+
Sbjct: 121 RVHIVLAEKGSFRRGDQKPSASVVIRAEGGFSAESAQSIRQLVAAAVPSLDASSVTVLDT 180

Query: 213 TGKLL-TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ 271
            G LL +A E        + S+ Q +   ++ +I KALA +LG+ +F+++V A L+ D +
Sbjct: 181 NGHLLASAGEGANGAALMTASLEQQVASHVDDSIRKALAPYLGLGHFQTSVQAALDTDRR 240

Query: 272 QIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDK 331
           Q +E  YDP+S+VERS+R+ +++  S  ++ ++A  VEQN+P    +      S E TD+
Sbjct: 241 QTKETTYDPESRVERSVRVVRESGDSRNNRNDNATGVEQNIPQEQIQNRNGESSTEKTDR 300

Query: 332 KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK-IDSYLAEINK 390
           +EE +NYE+N+K+++T  D Y ++RLSIAVV+++ RL +  G +      +D  + +I  
Sbjct: 301 REELTNYEVNSKTVSTVSDGYSIKRLSIAVVIDQARLLQTAGTTPPPANFVDQQITKIRD 360

Query: 391 IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL 450
           +V+ A G+N+ RGD I +T+++FL+    +   V   + D L R   +  NAL  L    
Sbjct: 361 LVATAAGLNANRGDVINVTAVNFLDPAGADMEPVSAPWTDTLLRQSGSYANALAILAAVG 420

Query: 451 LVTFLGLHALRRLHNIDDA--KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
           L+ + GL  L R  N+  A  +        + +P  I SA + G      I   ++  D 
Sbjct: 421 LLIWFGLRPLLRDQNVKPAGTEVAIREAGEVATPNFIGSAESVGEGAQAVIGGPAAYADQ 480

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQH 561
              S    S +   +   + LRL  MIE++EER A +L++W       R    
Sbjct: 481 MKTS---LSDLRQRMRMPAKLRLEQMIEMDEERVAAVLKQWIHETASGREADP 530


>gi|254504967|ref|ZP_05117118.1| flagellar M-ring protein FliF [Labrenzia alexandrii DFL-11]
 gi|222441038|gb|EEE47717.1| flagellar M-ring protein FliF [Labrenzia alexandrii DFL-11]
          Length = 548

 Score =  449 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 214/563 (38%), Positives = 323/563 (57%), Gaps = 22/563 (3%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M   +   + + +   LG  R++ LA + L  I    A  F+++ P    LY  L   DV
Sbjct: 1   MPGREHAEKLWANLMELGMRRLIALALIGLATIATVGAGAFYLSRPETTPLYTGLTGEDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           +RI  AL +A I F +S  G ++ V      KAR+ LA +GLP   +NSGYELFD + S 
Sbjct: 61  SRIGSALRDAGIPFDVSSEGDAVMVSHGQTAKARMLLAEKGLPR-GANSGYELFDDLGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGE+ARTIQ + GI AARVHIV+P+ GSFR+    P+ASV+IR+ 
Sbjct: 120 GLTSFMQEVTRVRALEGELARTIQLMKGIRAARVHIVLPEKGSFRRDQQPPSASVVIRSD 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQAIQH 239
            P   ++A+AIRHLVAA VP ++   VTVLD+TG +L A  +  +   G+  ++  A+ +
Sbjct: 180 IPDDVRTADAIRHLVAAGVPGMEAAKVTVLDTTGGILAAGKDPTKASAGQMATLETAVSN 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
            I+ N+ K L  +LG+DNF+ +V A+LN D + I E ++DPDS++ERS+R  ++ + +E 
Sbjct: 240 RIQENVRKTLTPYLGLDNFQVSVAAKLNTDRKMIAETIFDPDSRIERSVRTIRENENAEN 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           S   + VT EQN+P  +       RSLE T+++EE  NYEI++K I T+ D Y+++RLSI
Sbjct: 300 SSAATPVTAEQNLPDENVEADGGERSLEETERREETVNYEISSKRIETSQDGYRVDRLSI 359

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AV+V++ RL   LG S  Q +I+  + EI  +V+++ G+   RGD + I+ +DF++    
Sbjct: 360 AVLVDRTRLAASLGGSPTQSQIEEQVREIEALVASSAGVTEERGDLVKISVVDFVDGGRD 419

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA----LRRLHNIDDAKKGEVG 475
                 +   + L R    +INAL  L  ++LV + GL      L    + + A+  E+G
Sbjct: 420 LEPIPPIGVTEYLLRQSGNIINALAILTVSMLVIWFGLRPAVAALVPQVSSEQAEMAEIG 479

Query: 476 --GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
              + +          T  LMP D+               +L   +NS  +K +  +L  
Sbjct: 480 LLPEGLEDAADAMDGETGFLMPPDH--------------SDLLHDLNSKRNKSALKKLES 525

Query: 534 MIEINEERFAKILRKWARSEIED 556
           ++E NEE+ A ILR+W       
Sbjct: 526 LLEFNEEQSAAILRQWLYDTERT 548


>gi|254559216|ref|YP_003066311.1| flagellar M-ring protein FliF [Methylobacterium extorquens DM4]
 gi|254266494|emb|CAX22258.1| Flagellar M-ring protein FliF [Methylobacterium extorquens DM4]
          Length = 559

 Score =  449 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 190/560 (33%), Positives = 311/560 (55%), Gaps = 7/560 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M   +Q  + + +   LG  R++ L  V L+  +      ++++ P  + LY  L   DV
Sbjct: 1   MFGREQAERLWSNIVDLGARRLIALGLVGLLVFLGVGVGAYYLSRPAQEMLYTGLSREDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           +RI   L +  I F +S +G+++ V      +AR+ LA +GLP SS  SGYELF+ + S 
Sbjct: 61  SRIGGVLKDNGIPFDVSSDGAAVLVSFGHTAQARMLLAEKGLPQSSK-SGYELFNDLGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           G+TSFMQE+TRVRALEGEIARTIQ + G+ AARVH+V+PD GSFR+     +ASV++R  
Sbjct: 120 GMTSFMQEVTRVRALEGEIARTIQGMKGVRAARVHLVLPDRGSFRRDQQPASASVVVRTE 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK-LLTANEMERNILGKSLSIVQAIQH 239
                  A+AIR LVA+A+P +    VTV+ S G  LL  ++      GK  ++ +++  
Sbjct: 180 PADDTSGAQAIRQLVASAIPGMKPDRVTVIGSEGTVLLAGDDAGTAPTGKMATLEKSVSR 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           E++ NI + LA +LGV NF  +V  +LN D     E +++PD +VERS+R  ++++ ++ 
Sbjct: 240 EMQDNIRRTLAPYLGVGNFEISVATQLNTDKTSTNETIFNPDQRVERSVRSVRESENAQN 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
              +   + ++N+P    R     +S   + KKE+ +NYEI+ K++ T  D Y + RLS+
Sbjct: 300 RNSQRPTSAQENLPDQRTRSDGNDQSSNESSKKEDLTNYEISQKTVQTVSDGYAIRRLSV 359

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AV+VN+ RLT + G   D+  +D  +AEI ++V +A G +  RGDTI + ++ F+ +   
Sbjct: 360 AVLVNRSRLTALAGPD-DKASLDKQIAEIEELVGSAAGFSKERGDTIKVAAVGFVNDGQP 418

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNIDDAKKGEVGGKS 478
                 +S  D++ +   T+INA   LV   L+ + GL   LR +    +  + EV   +
Sbjct: 419 MEPVPPLSLTDVMMKQSGTLINAATILVVAGLLIWFGLRPALRAILATPETAQSEVAALA 478

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR---NLQSRINSYVSKQSDLRLLHMI 535
            L   P+ +A  T  +     AL  S++     +     L   +   +++    RL  +I
Sbjct: 479 GLEGAPVLAADGTMALAAPGAALPGSSEAAKLPAPGVAGLLEELEDKMARSPQKRLEQLI 538

Query: 536 EINEERFAKILRKWARSEIE 555
           +I+EE+ A +L++W   E  
Sbjct: 539 DIDEEQVAAVLKRWLMREEA 558


>gi|323139667|ref|ZP_08074709.1| flagellar M-ring protein FliF [Methylocystis sp. ATCC 49242]
 gi|322395099|gb|EFX97658.1| flagellar M-ring protein FliF [Methylocystis sp. ATCC 49242]
          Length = 565

 Score =  448 bits (1153), Expect = e-123,   Method: Composition-based stats.
 Identities = 195/554 (35%), Positives = 311/554 (56%), Gaps = 6/554 (1%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +D++     +  +LG  ++  L     + + +   + ++++ P ++ LY  L+  DV+RI
Sbjct: 13  MDRITLLLDNLKALGTRKLAALGLTFALVVAIVSISAYYLSRPTFEVLYAGLDREDVSRI 72

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    I F I+  G+++SVP     +AR+ LA +GLP  S+N+GYELFDKV + GLT
Sbjct: 73  GSVLKSTGIPFDINTEGNAVSVPYGQTAQARMLLAERGLPQ-SANAGYELFDKVGALGLT 131

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
           SFMQE+TRVRALEGE+ARTIQ I G+ AARVHIVMPD GSFR+    P+ASV+IR   P 
Sbjct: 132 SFMQEVTRVRALEGELARTIQLIRGVKAARVHIVMPDEGSFRRAKQPPSASVIIRTEGPD 191

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEI 241
              +A+AIRHLVA+++P +++  VTVL++ G +L++++ +       K+L++ + IQ +I
Sbjct: 192 DTSAAQAIRHLVASSLPGMNVDQVTVLNTDGMILSSSDGDATDAVPVKTLTLEKNIQKDI 251

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           + NI + L  +L + NF+  V A +N D +QI E +YDPDSKVERS+R  K++ RS+ S 
Sbjct: 252 QDNIRRTLTPYLRLPNFQVTVRARVNTDRKQINETIYDPDSKVERSVRTVKESSRSQDSS 311

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
             +A TV  N+P          +S +   K EE +NYE+++K++ T    Y +E LS+AV
Sbjct: 312 SAAATTVTNNIPQNGVNNADGKQSNDENKKNEELTNYEMSSKTVTTVSGGYNIEHLSVAV 371

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           ++N+    E       Q  ID  L EI +++S+A G+   RGD + +T++DF+ N+   +
Sbjct: 372 LINRSAFAEPNKEPPKQEAIDRQLKEIEQLISSAAGLKKERGDALKVTAVDFMFNEHEMT 431

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSIL 480
                 F+ +L  H  +++N +  L    LV   GL   RR L      ++ E      +
Sbjct: 432 PVESPGFVAMLGSHLGSILNMIAALGIAALVVIFGLAPARRALLAESSTERTEPPPLIGM 491

Query: 481 SPPPISSAVTTGLMPND--NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
                 S        +    +A  +    I      L   I+      +  +L  +I+ +
Sbjct: 492 GDQSFESPTFEAPTFDGIPGLAGATPGGAIAMSGPTLLEDISERRQDIARRKLEELIQND 551

Query: 539 EERFAKILRKWARS 552
           E + A IL++W RS
Sbjct: 552 EAQAAAILKQWMRS 565


>gi|302878299|ref|YP_003846863.1| flagellar M-ring protein FliF [Gallionella capsiferriformans ES-2]
 gi|302581088|gb|ADL55099.1| flagellar M-ring protein FliF [Gallionella capsiferriformans ES-2]
          Length = 566

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 133/557 (23%), Positives = 233/557 (41%), Gaps = 26/557 (4%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           F     L   + + L   I   I L + A  +  +P Y  LY  L   D   I  +L + 
Sbjct: 15  FSRFEQLSAQQKMGLGVGIAALIALIVGAWMWGQTPDYRILYSNLSDRDGGAIIESLQQL 74

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI ++ +D G ++ +P+  V +AR+ LA+QGLP   +  G+EL +    FG+T F +++ 
Sbjct: 75  NIPYKFADGGGALMIPADQVHEARLKLASQGLPKGGT-VGFELME-NQKFGITQFAEQVN 132

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE- 189
             RALEGE+AR++QSI  + +ARVH+ +P    F K   +P+ASV++      +  SA+ 
Sbjct: 133 YQRALEGELARSVQSIGAVASARVHLAIPKPSVFIKEQQKPSASVVLTLHGGRLLDSAQV 192

Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMNIN 246
            AI HL++++VP++   +VT++D  G LL++  +     +    L  VQ I+      I 
Sbjct: 193 TAIVHLISSSVPDMSAKNVTIVDQDGSLLSSLQDSNGLGLDANQLKYVQQIEQNYIKRIE 252

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS---KDAQRSETSQPE 303
             L   LG +N  + V A ++    +     Y P+     S   S    +          
Sbjct: 253 DILTPLLGANNVHAQVTANIDFARTEQTAETYKPNQNPADSSVRSLQNSETLNGSGLNAS 312

Query: 304 SAVTVEQNMPHVSDRKV----------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
                  N P V               P      +   KE   NYE++     T      
Sbjct: 313 GVPGALSNQPPVPATAPIVSAPPGATDPANAPKIDNLHKENTINYEVDRTISHTILPVGM 372

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           ++RLS+AVVVN  + T+  G+ + +   D+  A+I+ +V  A G +  RGD++ I +  F
Sbjct: 373 IKRLSVAVVVNNRKATDPKGKVSSKPLTDAEKAQIDNLVKDAVGFDKNRGDSLNIQNAAF 432

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
            + +   S        DI+      +   L+     L+V F  +    R      A+  +
Sbjct: 433 NDEKEALSELPWWKQADIIE-LAKLLAKYLIIAAVMLIVVFKIIKPAFRPLEPFHAETDD 491

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
               + +   P        +          +       S +    +  Y    +  R   
Sbjct: 492 EEHVATVDHTPGEGEGEGEIATGAA----GTQHANEPGSEHYTPPVEPYEKNLNIAR--Q 545

Query: 534 MIEINEERFAKILRKWA 550
           + + + +  A +++ W 
Sbjct: 546 ITQQDPKIVASVIKDWV 562


>gi|209964124|ref|YP_002297039.1| flagellar MS-ring protein [Rhodospirillum centenum SW]
 gi|209957590|gb|ACI98226.1| flagellar M-ring protein FliF [Rhodospirillum centenum SW]
          Length = 556

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 152/551 (27%), Positives = 258/551 (46%), Gaps = 9/551 (1%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
            F ++  +LG  R+  +    LV + LF+      +SP    LY  L  +D   I   L 
Sbjct: 8   SFLQTLRNLGAVRLAAIGGATLVIVGLFVYMMSQWSSPGMSLLYSDLTPADGGAIVQQLE 67

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
           +  I ++ S +G+ I VPS  VG+ R+ +A QGLP S  N GYELF++    G TSFMQ 
Sbjct: 68  QQQIPYKASPDGTRIEVPSDQVGRVRMLMAQQGLP-SGGNVGYELFNQPEGLGTTSFMQN 126

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--K 186
           I ++RALEGE++RT+Q++  + AAR+H+V+P    F +     TASV +R    +    +
Sbjct: 127 IQQLRALEGELSRTVQTLQPVQAARIHLVLPKRELFSRQNQTATASVFVRLRPGASLGKE 186

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAIQHEIEM 243
              AI+ LVAAAVP L+   V ++D  G +L     ++ +  +L  +     A +  +  
Sbjct: 187 QVLAIQTLVAAAVPQLEPDMVAIVDDKGNVLARGMGSDSQEAMLATAEEKKLAYEQRLTQ 246

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            +   L+  +G    R+ V AEL+ D       +YDPDS+V RS +   +    +     
Sbjct: 247 TVEDLLSRTVGFGRVRAQVSAELDFDRITTNSEIYDPDSQVVRSTQTVNEQSEDQNRDGI 306

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
             VTV  N+P           S   T + EE  NYEIN        +  ++ RLS+AV+V
Sbjct: 307 DPVTVANNLPTADATNTASGLSSSKTSRAEESINYEINRTVKVHERETGQIRRLSVAVLV 366

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           +        G S  Q + ++ L ++ ++V +A G ++ RGDT+ + +M F       +G 
Sbjct: 367 DGTYAAAEDGTSTYQPRPEAELDQLRRLVESAIGFDAARGDTVEVVNMRFATPDDL-AGL 425

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR-RLHNIDDAKKGEVGGKSILSP 482
            + +   +       +   +V  +  +LV  L +  L  R  +     + E    +    
Sbjct: 426 GEETIFGLPKEDVFRIAQTIVLAIVAILVILLVIKPLVARALDRTPQLEDEPDLLAGGDG 485

Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542
            P  +    G +  + +AL+++  +         +R++  V   S  ++  ++E + E  
Sbjct: 486 VPQLAGPGGGALARE-LALEAAQANEELEQMIDINRVDGRVRASSLRKVGEIVEKHPEEA 544

Query: 543 AKILRKWARSE 553
             I+R W   E
Sbjct: 545 VSIIRNWLYQE 555


>gi|121602745|ref|YP_989390.1| flagellar MS-ring protein [Bartonella bacilliformis KC583]
 gi|120614922|gb|ABM45523.1| flagellar M-ring protein FliF [Bartonella bacilliformis KC583]
          Length = 553

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 209/557 (37%), Positives = 322/557 (57%), Gaps = 15/557 (2%)

Query: 3   ILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           +LD+   F  S       LG  R++ L  V +      + + F++  P ++ LYV L   
Sbjct: 1   MLDKFFVFLSSSGSALYKLGAKRLIALGLVGVTLFGTILFSSFYLTRPSHETLYVGLSRD 60

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
           DVNRI +AL EA I F +S +G S+ VP      AR+ LA +GLP+S+ N+GYELFD + 
Sbjct: 61  DVNRIGMALGEAGIAFDVSSDGGSVQVPVGQAEHARMFLAEKGLPTSN-NAGYELFDNMG 119

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178
           S GLTSFMQEITR RALEGEIARTIQ++ G+ AARVHIV+PD GSFR+   +PTASV+IR
Sbjct: 120 SLGLTSFMQEITRQRALEGEIARTIQAVQGVKAARVHIVLPDKGSFRRANQKPTASVVIR 179

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQAI 237
                  +SA++IRHLVAAAVP+L+   VTV+D+ G++L +  +          S+   +
Sbjct: 180 TDGGFSVESAQSIRHLVAAAVPSLEASSVTVMDTRGQMLASGVDAINGAPVVMASLEHQV 239

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
             +I+ NI K L  +LG+D+F+++V   L+ D +QI E ++DP+S+V RSIR  +D   S
Sbjct: 240 ASQIDANIRKQLVPYLGLDHFQTSVQVALDTDRRQINETIFDPESQVVRSIRSVRDQADS 299

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
           + S+   AV VEQN+P           S +  D++EE +NYEIN+K I+T  D Y +++L
Sbjct: 300 QNSRNSDAVGVEQNIPQEEIANGSGETSTDKKDRREETTNYEINSKIISTVRDGYSVKKL 359

Query: 358 SIAVVVNKGRLTEVLGRSA-DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           +IA+VV++ RL    G +   +  I+  +  I ++VSAA G++  RGD I +T++DF+ +
Sbjct: 360 AIAIVVDRARLVPANGETTVSEDFINDEVNRIQQMVSAAAGLDPNRGDIINVTAVDFIGH 419

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476
              +   ++      +SR+   V+N +  ++  LL+ FLG+  L R   + + +K    G
Sbjct: 420 NDADLTPIETPLWKSVSRYIPGVVNGVALVIAVLLILFLGVRPLMR--EMREGQKARNSG 477

Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536
           ++ L+      A+         +   +   D      +    + + +      RL  MI+
Sbjct: 478 ENALAGLGAVPALDNQSQAAAGVGGVTKTND------DTLRDLRNRMRVPPQNRLEKMID 531

Query: 537 INEERFAKILRKWARSE 553
           ++EERFA ILR+W    
Sbjct: 532 MDEERFAGILREWVNDT 548


>gi|118589973|ref|ZP_01547377.1| flagellar M-ring protein [Stappia aggregata IAM 12614]
 gi|118437470|gb|EAV44107.1| flagellar M-ring protein [Stappia aggregata IAM 12614]
          Length = 548

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 210/554 (37%), Positives = 313/554 (56%), Gaps = 12/554 (2%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M   +   + + +   LG  R++ LA + L  I    A  ++++ P    LY  L+  DV
Sbjct: 1   MPGREHAEKLWANLMELGVRRLVALALIGLATIATVGAGAYYLSRPEQTVLYTGLDGEDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            RI  AL +A I F I+  G+++ V  +   KAR+ LA +GLP   +NSGYELFD++ S 
Sbjct: 61  TRIGSALRDAGIPFDINSEGTAVMVSHAQTAKARMLLAEKGLPR-GANSGYELFDELGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGE+ARTIQ + GI AARVHIV+P+ GSFR+    P+ASV+IR+ 
Sbjct: 120 GLTSFMQEVTRVRALEGELARTIQLMKGIRAARVHIVLPEKGSFRRDQQPPSASVVIRSD 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL-SIVQAIQH 239
            P   ++A+AIRHLVAA VP +    VTVLD++G +L A +         L S+  A+ +
Sbjct: 180 VPDDVRTADAIRHLVAAGVPGMQADKVTVLDTSGGILAAGKDPTKASAGQLASLETAVSN 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
            I+ NI K L  +LG+DNF+ +V AELN D + I E ++DPDS+ ERSIR  ++ + ++ 
Sbjct: 240 RIQENIRKTLTPYLGLDNFQVSVAAELNTDRKTIAETIFDPDSRTERSIRTIRENENAQN 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           S   +  TVEQN+P          RS E  +++EE  NYEI++K I T+ D Y+++RLSI
Sbjct: 300 SSVSAPTTVEQNLPEEDVSADNGERSSEENERREETVNYEISSKRIETSQDGYRVDRLSI 359

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AV+V+K RL + LG    Q ++   L EI  +V+++ GI   RGD + +  +DF++    
Sbjct: 360 AVLVDKSRLAQSLGGEPTQAQMQEQLTEIEALVASSAGIEKERGDLVKVAVVDFVDGGRA 419

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
                 +S  + L R    +INAL  L  ++LV + GL           AK      +  
Sbjct: 420 MEPIPPISITEYLMRQSGNIINALAILTVSMLVIWFGLRPAVAALVPQIAKPQVEMAELG 479

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR-NLQSRINSYVSKQSDLRLLHMIEIN 538
           ++P      V          A+D     +      ++   +NS  +K +  +L  ++E N
Sbjct: 480 MTPETAEGTVE---------AVDGEQTFLMPPDHSDMLQDLNSRRNKSALRKLESLLEFN 530

Query: 539 EERFAKILRKWARS 552
           EE+ A ILR+W   
Sbjct: 531 EEQSAAILRQWLYE 544


>gi|319403971|emb|CBI77559.1| Flagellar M-ring protein [Bartonella rochalimae ATCC BAA-1498]
          Length = 554

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 208/557 (37%), Positives = 324/557 (58%), Gaps = 15/557 (2%)

Query: 3   ILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           +LD+ L F  S       LG  R++ L  V L      + + F++  P Y+ LYV L   
Sbjct: 1   MLDKFLAFLSSSGNALHKLGVKRLIALGMVGLTLFGTILFSSFYLTRPIYEILYVGLSRD 60

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
           DVNR+ +AL EA I F +S +GS++ VP     +AR+ LA +GLP+S+ N+GYELFD + 
Sbjct: 61  DVNRMGMALGEAGIAFDVSSDGSTVQVPVGQAEQARMFLAEKGLPTSN-NAGYELFDNMG 119

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178
           S GLTSFMQEITR RALEGEIARTIQ++ G+ AARVHIV+PD GSFRK   +PTASV+IR
Sbjct: 120 SLGLTSFMQEITRQRALEGEIARTIQAVQGLKAARVHIVLPDKGSFRKANQKPTASVVIR 179

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQAI 237
             +    + A++IR LVAAAVP+L+   VTV+D+ G+LL +  +          S+ Q +
Sbjct: 180 TNSGFAVEFAQSIRQLVAAAVPSLEASSVTVMDTRGQLLASGVDAMNGASMMMASLEQQV 239

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
             +I+ NI K L  +LG+D+F+++V   L+ D +Q  E V+DP+S+V RS+R  +D   S
Sbjct: 240 ASQIDANIRKQLVPYLGLDHFQTSVQVVLDTDRRQTNETVFDPESQVVRSVRSVRDQADS 299

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
           + ++   AV VEQN+P          RS +  D++EE +NYEIN+K+I+T  D Y +++L
Sbjct: 300 QNNRNSDAVGVEQNIPQEEIANGGGERSTDKKDRREEITNYEINSKTISTVSDGYSVKKL 359

Query: 358 SIAVVVNKGRLTEVLG-RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           ++A+VV++ RL    G +   +  ++  +  I ++V+ A G++ +RGD I +T++DF+ N
Sbjct: 360 AVAIVVDRARLVLPDGTKPTSENALNDEVNRIQQMVATAAGLDPKRGDIINVTAVDFVGN 419

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476
              +   VQ      LSR+ + +IN +  ++   L+ FLG+  L R   + + KK     
Sbjct: 420 SEADMAPVQEPLWKSLSRYTSGLINGVALVIAVFLILFLGVRPLMR--EMREGKKALENS 477

Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536
           ++ ++      A+      N      +   +      +    + + +      RL  MI 
Sbjct: 478 ENAVAGLGNIPALEHQYQDNAEFGGVTGTNN------DTLHNLRNRMRVPPQNRLEQMIA 531

Query: 537 INEERFAKILRKWARSE 553
           ++EERFA +LR+W    
Sbjct: 532 MDEERFAGVLREWVHDT 548


>gi|319406987|emb|CBI80624.1| Flagellar M-ring protein [Bartonella sp. 1-1C]
          Length = 554

 Score =  446 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 211/558 (37%), Positives = 324/558 (58%), Gaps = 17/558 (3%)

Query: 3   ILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           +LD+   F  S       LG  R++ L  V L      + + F++  P Y+ LYV L   
Sbjct: 1   MLDKFWVFLSSSGNALHKLGVKRLIALGMVGLTLFGTILFSSFYLTRPIYETLYVGLSRD 60

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
           DVNR+ +ALSEA I F +S +G ++ VP     +AR+ LA +GLP+S+ N+GYELFD + 
Sbjct: 61  DVNRMGMALSEAGIAFDVSSDGGTVQVPVGQAEQARMFLAEKGLPTSN-NAGYELFDNMG 119

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178
           S GLTSFMQEITR RALEGEIARTIQ + G+ AARVHIV+PD GSFRK   +PTASV+IR
Sbjct: 120 SLGLTSFMQEITRQRALEGEIARTIQVVQGVKAARVHIVLPDKGSFRKANQKPTASVVIR 179

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQAI 237
             +    + A++IR LVAAAVP+L+   VTV+D+ G+LL +  +          S+ Q +
Sbjct: 180 TNSSFSVEFAQSIRQLVAAAVPSLEASSVTVMDTRGQLLASGVDAMNGASMMMASLEQQV 239

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
             +I+ NI K L  +LG+D+F+++V   L+ D +Q  E V+DP+S+V RS+R  +D   S
Sbjct: 240 ASQIDANIRKQLVPYLGLDHFQTSVQVVLDTDRRQTNETVFDPESQVVRSVRSVRDQADS 299

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
           + ++   AV VEQN+P          RS +  D++EE +NYEIN+K+I+T  D Y +++L
Sbjct: 300 QNNRNSDAVGVEQNIPQEEIANGGGERSTDKKDRREEITNYEINSKTISTVSDGYSVKKL 359

Query: 358 SIAVVVNKGRLTEVLG-RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           ++A+VV++ RL    G +   +  ++  +  I ++V+ A G++ +RGD I +T++DF+ N
Sbjct: 360 AVAIVVDRARLVLPDGTKPTSENALNDEVNRIQQMVATAAGLDPKRGDIINVTAVDFVGN 419

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476
              +   +Q      LSR+ + +IN +  ++   L+ FLG+  L R   + + KK     
Sbjct: 420 SEADMAPIQEPLWKSLSRYTSGLINGVALVIAVFLILFLGVRPLMR--EMREGKKALENS 477

Query: 477 KSILSPPPISSAVTTGLMPNDNI-ALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
            + ++      A+      N     +  +N D  S+ RN        +      RL  MI
Sbjct: 478 ANAVAGLGNIPALEHQYQDNAEFGGVTGTNNDTLSNLRN-------RMRVPPQNRLEQMI 530

Query: 536 EINEERFAKILRKWARSE 553
            ++EERFA +LR+W    
Sbjct: 531 AMDEERFAGVLREWVHDT 548


>gi|92116309|ref|YP_576038.1| flagellar MS-ring protein [Nitrobacter hamburgensis X14]
 gi|91799203|gb|ABE61578.1| flagellar M-ring protein FliF [Nitrobacter hamburgensis X14]
          Length = 540

 Score =  446 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 146/552 (26%), Positives = 250/552 (45%), Gaps = 17/552 (3%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +  LL F K    LG +R++ + +V    I  F      V +P    L+  L V D + I
Sbjct: 1   MQGLLAFLKG---LGPSRLMAMVAVTTALIGFFAFVIMRVTAPQMTTLFTDLSVEDSSGI 57

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    I + + ++G+ I VP   V + R+ LA  GLP      GYE+FDK ++ G T
Sbjct: 58  IKDLERQAIPYELRNDGAVIMVPKDKVTRLRMKLAEAGLPKGGG-VGYEIFDKSDALGTT 116

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
           SF+Q I R+RALEGE++RTI++I  I  ARVH+V+PD   F +   +P+AS+++R     
Sbjct: 117 SFVQNINRLRALEGELSRTIKAIDRIQDARVHLVLPDRPLFSREAPQPSASIVLRVRGGL 176

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEM 243
             +   AIRHLVA+AV  L    V+++D TG+LL                  A +  +  
Sbjct: 177 EPQQIRAIRHLVASAVNGLKPQRVSIVDETGQLLADGSATDADGTTGDERRTAFEKRMRN 236

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            +   +++ +G    R  + A+ + +        +DP+ +V RS +  +++  S T+   
Sbjct: 237 QVEAIVSSVVGSGRARVQLSADFDYNKITQTSDKFDPEGRVLRSSQTREES--SVTADNN 294

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
             VTV   +P       P P + + + K EE +NYEI+  +     +  ++ R+S+AV+V
Sbjct: 295 GQVTVNNELPGNQQSDNPSP-ARDQSKKSEETNNYEISRTTKTEVTEAGRVNRISVAVLV 353

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           +        G+     +    L  I  +V +A G + +RGD + + ++ F E        
Sbjct: 354 DGTYTKNDQGQMVYAERSKEQLDRIATLVRSAIGFDQKRGDQVEVVNLKFAEPPAAVPLA 413

Query: 424 VQVSFMDIL---SRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
                + ++         VI+  V L+  L+VTF+ +  L R     +          + 
Sbjct: 414 EPAGLLGMMALTKDDVMYVIDLAVMLLLGLVVTFMVIRPLVRRILASEPAPAGAAPSQL- 472

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
            P P  +    G    + +   S+   +        +++   V  QS  R+  + E N  
Sbjct: 473 -PAPADATAQAGATGQNLVPGGSATAQLID-----VAQVQGQVHAQSVHRVGELAERNPA 526

Query: 541 RFAKILRKWARS 552
             A I+R+W   
Sbjct: 527 ETASIIRQWLAE 538


>gi|254239470|ref|ZP_04932792.1| Flagella M-ring outer membrane protein precursor [Pseudomonas
           aeruginosa 2192]
 gi|126192848|gb|EAZ56911.1| Flagella M-ring outer membrane protein precursor [Pseudomonas
           aeruginosa 2192]
          Length = 598

 Score =  446 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 132/593 (22%), Positives = 255/593 (43%), Gaps = 67/593 (11%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F  + + +   R + L   +   + +  A   +   P Y  LY  L   D NR+  AL
Sbjct: 27  LSFLDNLSEMTMLRQIGLLVGLAASVAIGFAVVLWSQQPDYKPLYGSLNGVDANRVVEAL 86

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + A+I +++  N  ++ V +  +G+AR+ +A+ G+  + SN G+E+ DK  + G + FM+
Sbjct: 87  TAADIPYKVEPNSGALLVKADDLGRARMKVASAGVAPTDSNVGFEILDKEQALGTSQFME 146

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
                R LEGE+ART+ S++ + AARVH+ +P    F +   +P+ASV++        + 
Sbjct: 147 ATNYRRGLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDDRKPSASVLVELYPGRSLEP 206

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP LD   VTV+D  G LL+  +   E  + GK     + ++  +  
Sbjct: 207 SQVMAIVNLVATSVPELDKSQVTVVDQKGNLLSDQQELSELTMAGKQFDFTRRMEGLLTQ 266

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            ++  L   LG   +++ V A+++    +    +Y+PD    RS + + +  R  +S P+
Sbjct: 267 RVHNILQPVLGNGRYKAEVSADVDFSAVESTSEMYNPDQPALRSEQRNNEE-RQNSSGPQ 325

Query: 304 SAVTVEQNMPHVSDRKVPLPRSL---------------------------------ENTD 330
                  N P           +                                      
Sbjct: 326 GVPGALSNQPPGPASAPQQATASAPADYVAPGQPLKDANGQTIIDPKTGKPELAPYPTDK 385

Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEIN 389
           + +   NYE++     T     +L RLS+AVV++     +   G  + Q      LA   
Sbjct: 386 RDQTTRNYELDRSISYTKQQQGRLRRLSVAVVLDDQMKVDAKTGEVSHQPWSADELARFT 445

Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALVF 445
           ++V  + G ++ RGD++++ +  F   Q     ++    Q  F DI+ +           
Sbjct: 446 RLVQDSVGYDASRGDSVSVINAPFAPAQAEEIDSIPFYSQPWFWDIVKQ----------- 494

Query: 446 LVGTLLVTFLGLHALRR-LHNIDDAKKGE--VGGKSILSPPPISSAVTTGLMPNDNIALD 502
           ++G L +  L    LR  L NI    KG+   GG        +  +   G + +D +++ 
Sbjct: 495 VLGVLFILVLVFGVLRPVLSNITGGGKGKSLAGGGGRDGDLALGESGLEGSLADDRVSIG 554

Query: 503 SSNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
             +  +  S +    +++N+         + +++  +  R A+++++W  ++ 
Sbjct: 555 GPSSILLPSPTEGYDAQLNA---------IKNLVAQDPGRVAQVVKEWINADE 598


>gi|319409176|emb|CBI82820.1| Flagellar M-ring protein [Bartonella schoenbuchensis R1]
          Length = 555

 Score =  446 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 213/556 (38%), Positives = 327/556 (58%), Gaps = 15/556 (2%)

Query: 3   ILDQLLQFF----KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           +LD+LL F     ++   LG  R++ L  V +      + + F++  P Y+ LY+ L   
Sbjct: 1   MLDKLLAFLSSSGQALQKLGVKRLVALGLVGITLFGTILFSSFYLTRPSYETLYIGLSRD 60

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
           DVNR+ VAL E  I F +S +GSSI VP     KAR+ LA +GLP+S+ N+GYELFD + 
Sbjct: 61  DVNRMGVALGETGIAFDVSSDGSSIQVPVGQAEKARMFLAEKGLPTSN-NAGYELFDNMG 119

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178
           S GLTSFMQEITR RALEGEIARTIQ + G+ AARVHIV+PD GSFRK   +PTASV+IR
Sbjct: 120 SLGLTSFMQEITRQRALEGEIARTIQVVQGVKAARVHIVLPDKGSFRKANQKPTASVVIR 179

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQAI 237
                  +SA++IR LV+AAVP+L+   VTV+D+ G+LL +  +       +   + Q +
Sbjct: 180 TDGGFSAESAQSIRQLVSAAVPSLEASSVTVMDTRGQLLASGVDAANGASVRMALLEQQV 239

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
             +I+ NI K L  +LG+D+F+++V  +L+ + QQI E V+DP+S+V RS+R  +D   S
Sbjct: 240 ASQIDANIRKQLVPYLGLDHFQTSVQVDLDTNRQQINETVFDPESQVVRSVRSVRDQADS 299

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
           + S+   AV VEQN+P          RS +  D++EE +NYEIN+K I+T  D Y +++L
Sbjct: 300 QNSRNNDAVGVEQNIPQEEIANGGGERSTDKKDRREETTNYEINSKIISTVKDGYSVKKL 359

Query: 358 SIAVVVNKGRLTEVLGRSAD-QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           ++A+VV++ RL    G + D +  I+  +  I ++V+ A G++ +RGD I +T++DF+  
Sbjct: 360 AVAIVVDRARLALAKGNNGDSESFINDEINRIQQMVATAAGLDPKRGDVINVTAVDFMGY 419

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476
              +   +Q      LS + +T +N L  +V  LL+ FLG+  L R        +   G 
Sbjct: 420 SDKDLTPMQTPIWKSLSPYLSTFVNGLALVVAVLLILFLGVRPLMR--------EMREGQ 471

Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536
           K++ +     + +       +   ++     I     +  + + S +      RL  MIE
Sbjct: 472 KALDNEQNALAGLQDVPALENQSNINGEFGGIAGAKDDTLNDLRSRMRVAPQNRLEKMIE 531

Query: 537 INEERFAKILRKWARS 552
           I+E+RFA++LR+W   
Sbjct: 532 IDEQRFAEVLREWVND 547


>gi|91785611|ref|YP_560817.1| flagellar MS-ring protein [Burkholderia xenovorans LB400]
 gi|91689565|gb|ABE32765.1| Flagellar FliF M-ring protein [Burkholderia xenovorans LB400]
          Length = 600

 Score =  445 bits (1145), Expect = e-123,   Method: Composition-based stats.
 Identities = 138/531 (25%), Positives = 233/531 (43%), Gaps = 25/531 (4%)

Query: 38  AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97
               +  +P Y  LY  L   D   I  AL  ANI ++ SD G +I VP+  V + R+ L
Sbjct: 79  GLFLWSRAPDYKVLYSNLSDRDGGAIITALQAANIPYKFSDAGGAILVPAEQVHEMRLRL 138

Query: 98  AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
           A+QGLP S S  G+EL D    FG++ F ++I   RALEGE+ RT++SIS + +ARVH+ 
Sbjct: 139 ASQGLPKSGS-VGFELMD-NQKFGISQFAEQINYQRALEGELERTVESISSVKSARVHLA 196

Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGK 215
           +P    F +    P+ASV++           +  AI H+V++AVP++ +  VT+LD  G 
Sbjct: 197 IPKPSVFVRDKEAPSASVLVNLYPGRALDEGQVLAITHMVSSAVPDMPVKGVTILDQDGN 256

Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LLT       +    L   Q I+   +  I+  LA   G  N  S V A+++    +   
Sbjct: 257 LLTQPSTGSGLDASQLKYRQQIERSTQQRIDAILAPLFGSGNAHSQVSADIDFSRSEQTS 316

Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLP----------RS 325
             Y P+   +++   S+ +  +       A  V   + +   +    P           +
Sbjct: 317 ENYGPNGNPQQAAIRSQQSSSATEMSQGGASGVPGALSNQPPQPASAPINAPTGASGVTT 376

Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385
              +D+K+  +NYE++            ++RLS+AVVVN  R+ +  G +  Q      L
Sbjct: 377 TPVSDRKDSTTNYELDKTVRHLERPMGGIKRLSVAVVVNYLRVVDAKGHATMQPVTADKL 436

Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDI--LSRHFATVINAL 443
           A++N++V  A G ++ RGD++ + +  F  +   N+        D+  L+R  AT +   
Sbjct: 437 AQVNQLVKDAMGFDAARGDSVNVVNSPFTTDLDPNADLPWWRTPDMIALARQVATYLGIG 496

Query: 444 VFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDS 503
              V   L   +   ALRR     +         +   P P    +  G+   +      
Sbjct: 497 A--VALFLYFVMVKPALRRAFPPPEP------VVAGALPSPDEPILLDGIPAAERAGAGG 548

Query: 504 SNQDIFSHSRNLQSRINSYVSKQSDLRLLH-MIEINEERFAKILRKWARSE 553
           S+         L +  NS    + +L     +   + +  A +++ W   E
Sbjct: 549 SSVAELESDSELLALENSKHKYERNLEFARNIARQDPKIVATVVKNWVSDE 599


>gi|70729030|ref|YP_258764.1| flagellar MS-ring protein [Pseudomonas fluorescens Pf-5]
 gi|68343329|gb|AAY90935.1| flagellar M-ring protein FliF [Pseudomonas fluorescens Pf-5]
          Length = 595

 Score =  445 bits (1145), Expect = e-123,   Method: Composition-based stats.
 Identities = 128/592 (21%), Positives = 247/592 (41%), Gaps = 66/592 (11%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  ++   L
Sbjct: 25  LSFLENLSQMTMLRQVGLLVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDAKQVMDTL 84

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + A+I + +  N  ++ V +  + +AR+ LAA G+     N G+E+ DK    G + FM+
Sbjct: 85  ASADIPYTVEPNSGALLVKADDLSRARLKLAAAGVAPGDGNVGFEILDKEQGLGTSQFME 144

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
                R LEGE+ARTI S++ +  ARVH+ +P    F +   +P+ASV++   +    + 
Sbjct: 145 ATRYRRGLEGELARTISSLNNVKGARVHLAIPKSSVFVRDERKPSASVLVELYSGRSLEP 204

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEM 243
               AI +LVA +VP L+   VTV+D  G LL+       +   GK     + ++  +  
Sbjct: 205 GQVMAIVNLVATSVPELNKSQVTVVDQKGNLLSDQAENSALTMAGKQFDYSRRLEGMLTQ 264

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            ++  L   LG D +++ V A+++    +     ++PD    RS +   + QRS ++ P+
Sbjct: 265 RVHNILQPVLGNDRYKAEVSADVDFSAVESTSEQFNPDQPALRSEQSVNE-QRSSSNGPQ 323

Query: 304 SAVTVEQNMPHVSDRKV----------------------------------PLPRSLENT 329
                  N P                                         P+     + 
Sbjct: 324 GVPGALSNQPPAPASAPQTTGGATAAAGMVQPGQPLLDANGQQIMDPATGQPMLAPYPSD 383

Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN-KGRLTEVLGRSADQGKIDSYLAEI 388
            +++   N+E++     T     +L RLS+AVVV+ + ++    G ++        LA  
Sbjct: 384 KRQQSTKNFELDRSISHTKQQQGRLNRLSVAVVVDDQVKVNPANGETSRAPWSADELARF 443

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALV 444
            ++V  A G ++ RGD++++ ++ F   +      +    Q  F DI+ +          
Sbjct: 444 TRLVQDAVGFDASRGDSVSVINVPFSAERGEVIADIPFYSQPWFWDIVKQ---------- 493

Query: 445 FLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDS 503
            ++G L +  L    LR  L+NI    K +                  G + ND ++L  
Sbjct: 494 -VLGVLFILVLVFGVLRPVLNNITGGGKNKELAGLGSDVELGGMGGLDGELGNDRVSLGG 552

Query: 504 SNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
               +  S S    +++N+         +  ++  +  R A+++++W  ++ 
Sbjct: 553 PQSILLPSPSEGYDAQLNA---------IKSLVAEDPGRVAQVVKEWINADE 595


>gi|15596298|ref|NP_249792.1| flagellar MS-ring protein [Pseudomonas aeruginosa PAO1]
 gi|107100552|ref|ZP_01364470.1| hypothetical protein PaerPA_01001577 [Pseudomonas aeruginosa PACS2]
 gi|116049030|ref|YP_792168.1| flagellar MS-ring protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296390533|ref|ZP_06880008.1| flagellar MS-ring protein [Pseudomonas aeruginosa PAb1]
 gi|12230924|sp|Q51463|FLIF_PSEAE RecName: Full=Flagellar M-ring protein
 gi|9947018|gb|AAG04490.1|AE004540_10 Flagella M-ring outer membrane protein precursor [Pseudomonas
           aeruginosa PAO1]
 gi|115584251|gb|ABJ10266.1| Flagella M-ring outer membrane protein precursor [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 598

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 131/593 (22%), Positives = 255/593 (43%), Gaps = 67/593 (11%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F  + + +   R + L   +   + +  A   +   P Y  LY  L   D NR+  AL
Sbjct: 27  LSFLDNLSEMTMLRQIGLLVGLAASVAIGFAVVLWSQQPDYKPLYGSLNGVDANRVVEAL 86

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + A+I +++  N  ++ V +  +G+AR+ +A+ G+  + +N G+E+ DK  + G + FM+
Sbjct: 87  TAADIPYKVEPNSGALLVKADDLGRARMKVASAGVAPTDNNVGFEILDKEQALGTSQFME 146

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
                R LEGE+ART+ S++ + AARVH+ +P    F +   +P+ASV++        + 
Sbjct: 147 ATNYRRGLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDDRKPSASVLVELYPGRSLEP 206

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP LD   VTV+D  G LL+  +   E  + GK     + ++  +  
Sbjct: 207 SQVMAIVNLVATSVPELDKSQVTVVDQKGNLLSDQQELSELTMAGKQFDFTRRMEGLLTQ 266

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            ++  L   LG   +++ V A+++    +    +Y+PD    RS + + +  R  +S P+
Sbjct: 267 RVHNILQPVLGNGRYKAEVSADVDFSAVESTSEMYNPDQPALRSEQRNNEE-RQNSSGPQ 325

Query: 304 SAVTVEQNMPHVSDRKVPLPRSL---------------------------------ENTD 330
                  N P           +                                      
Sbjct: 326 GVPGALSNQPPGPASAPQQATASAPADYVAPGQPLKDANGQTIIDPKTGKPELAPYPTDK 385

Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEIN 389
           + +   NYE++     T     +L RLS+AVV++     +   G  + Q      LA   
Sbjct: 386 RDQTTRNYELDRSISYTKQQQGRLRRLSVAVVLDDQMKVDAKTGEVSHQPWSADELARFT 445

Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALVF 445
           ++V  + G ++ RGD++++ +  F   Q     ++    Q  F DI+ +           
Sbjct: 446 RLVQDSVGYDASRGDSVSVINAPFAPAQAEEIDSIPFYSQPWFWDIVKQ----------- 494

Query: 446 LVGTLLVTFLGLHALRR-LHNIDDAKKGE--VGGKSILSPPPISSAVTTGLMPNDNIALD 502
           ++G L +  L    LR  L NI    KG+   GG        +  +   G + +D +++ 
Sbjct: 495 VLGVLFILVLVFGVLRPVLSNITGGGKGKSLAGGGGRDGDLALGESGLEGSLADDRVSIG 554

Query: 503 SSNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
             +  +  S +    +++N+         + +++  +  R A+++++W  ++ 
Sbjct: 555 GPSSILLPSPTEGYDAQLNA---------IKNLVAQDPGRVAQVVKEWINADE 598


>gi|152984140|ref|YP_001349624.1| flagellar MS-ring protein [Pseudomonas aeruginosa PA7]
 gi|150959298|gb|ABR81323.1| flagellar M-ring protein FliF [Pseudomonas aeruginosa PA7]
          Length = 597

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 129/592 (21%), Positives = 253/592 (42%), Gaps = 66/592 (11%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F  + + +   R + L   +   + +  A   +   P Y  LY  L   D NR+  AL
Sbjct: 27  LSFLDNLSEMTMLRQIGLLVGLAASVAIGFAVVLWSQQPDYKPLYGSLNGVDANRVVEAL 86

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + A+I +++  N  ++ V +  +G+AR+ +A+ G+  + +N G+E+ DK  + G + FM+
Sbjct: 87  TAADIPYKVEPNSGALLVKADDLGRARMKVASAGVAPTDNNIGFEILDKEQALGTSQFME 146

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
                R LEGE+ART+ S++ + AARVH+ +P    F +   +P+ASV++        + 
Sbjct: 147 ATNYRRGLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDDRKPSASVLVELYPGRSLEP 206

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP LD   VTV+D  G LL+  +   E  + GK     + ++  +  
Sbjct: 207 SQVMAIVNLVATSVPELDKSQVTVVDQKGNLLSDQQELSELTMAGKQFDFTRRMEGLLTQ 266

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            ++  L   LG   +++ V A+++    +    +Y+PD    RS + + +  R  +S P+
Sbjct: 267 RVHNILQPVLGNGRYKAEVSADVDFSAVESTSEMYNPDQPALRSEQRNNEE-RQNSSGPQ 325

Query: 304 SAVTVEQNMPHVSDRKVPLPRS---------------------------------LENTD 330
                  N P           +                                      
Sbjct: 326 GVPGALSNQPPGPATAPQQATAGAPADYVAPGQPLKDANGQTIIDPKTGKPELAPYPTDK 385

Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEIN 389
           + +   NYE++     T     +L RLS+AVV++     +   G  + Q      LA   
Sbjct: 386 RDQTTRNYELDRSISYTKQQQGRLRRLSVAVVLDDQMKVDAKTGEVSHQPWSADELARFT 445

Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALVF 445
           ++V  + G ++ RGD++++ +  F   Q     ++    Q  F DI+ +           
Sbjct: 446 RLVQDSVGYDASRGDSVSVINAPFAPAQAEEIDSIPFYSQPWFWDIVKQ----------- 494

Query: 446 LVGTLLVTFLGLHALRR-LHNIDDAKKG-EVGGKSILSPPPISSAVTTGLMPNDNIALDS 503
           ++G L +  L    LR  L NI    KG  +          +  +   G + +D +++  
Sbjct: 495 VLGVLFILVLVFGVLRPVLSNISGGGKGKALADGGRDGDLALGDSGLEGSLADDRVSIGG 554

Query: 504 SNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
            +  +  S +    +++N+         + +++  +  R A+++++W  ++ 
Sbjct: 555 PSSILLPSPTEGYDAQLNA---------IKNLVAQDPGRVAQVVKEWINADE 597


>gi|319405414|emb|CBI79033.1| Flagellar M-ring protein FliF [Bartonella sp. AR 15-3]
          Length = 554

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 211/558 (37%), Positives = 326/558 (58%), Gaps = 17/558 (3%)

Query: 3   ILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           + D+ L F  S       LG  R++ L  V L      + + F++  P Y+ LYV L   
Sbjct: 1   MFDKFLAFLSSSGNALYKLGVKRLIALGMVGLTLFGTILFSSFYLTRPVYETLYVGLSRD 60

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
           DVNR+ +AL EA I F +S +GS + VP     +AR+ LA +GLP+S+ N+GYELFD + 
Sbjct: 61  DVNRMGMALGEAGIAFDVSSDGSVVQVPVGQAEQARMFLAEKGLPTSN-NAGYELFDNMG 119

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178
           S GLTSFMQEITR RALEGEIARTIQ + G+ AARVHIV+PD GSFRK   +PTASV+IR
Sbjct: 120 SLGLTSFMQEITRQRALEGEIARTIQVVQGVKAARVHIVLPDKGSFRKANQKPTASVVIR 179

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQAI 237
             +    +SA++IR LVAAAVP+L+   VTV+D+ G+LL +  +          S+ Q +
Sbjct: 180 TNSGFAVESAQSIRQLVAAAVPSLEASSVTVMDTRGQLLASGVDAMNGASIMMASLEQQV 239

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
             +I+ NI K L  +LG+D+F+++V   L+ D +Q  E V+DP+S+V RS+R  +D   S
Sbjct: 240 ASQIDANIRKQLVPYLGLDHFQTSVQVVLDTDRRQTNETVFDPESQVVRSVRSVRDQADS 299

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
           + ++   AV VEQN+P           S +  D++EE +NYEIN+K+I+T  D Y +++L
Sbjct: 300 QNNRNSDAVGVEQNIPQEEIANGGGETSTDKKDRREEITNYEINSKTISTVSDGYSVKKL 359

Query: 358 SIAVVVNKGRLTEVLG-RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           ++A+VV++ RL    G +   +  ++  +  I ++V+AA G++ +RGD I +T++DF+ +
Sbjct: 360 AVAIVVDRARLILPDGTKPTSENALNDEVNRIQQMVAAAAGLDPKRGDIINVTAVDFVGH 419

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476
              +   VQ      LSR+ + +IN +  ++   L+ FLG+  L R   + + KK     
Sbjct: 420 SEADMAPVQTPIWKSLSRYTSGLINGVALVIAVFLILFLGVRPLMR--EMREGKKALENN 477

Query: 477 KSILSPPPISSAVTTGLMPNDNI-ALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
           ++ ++      A+      N    ++  +N D  ++ RN        +      RL  MI
Sbjct: 478 ENTVAGLGNIPALEHQYQANAEFGSVRGTNNDTLNNLRN-------RMRVPPQNRLEQMI 530

Query: 536 EINEERFAKILRKWARSE 553
            ++EERFA +LR+W    
Sbjct: 531 AMDEERFAGVLREWVNDT 548


>gi|323527692|ref|YP_004229845.1| flagellar M-ring protein FliF [Burkholderia sp. CCGE1001]
 gi|323384694|gb|ADX56785.1| flagellar M-ring protein FliF [Burkholderia sp. CCGE1001]
          Length = 600

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 141/533 (26%), Positives = 237/533 (44%), Gaps = 30/533 (5%)

Query: 38  AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97
               +  +P Y  LY  L   D   I  AL +ANI ++ SD G +I VP+  V + R+ L
Sbjct: 80  GLFLWSRAPDYKVLYSNLSDRDGGAIITALQQANIPYKFSDAGGAILVPAEQVHEMRLRL 139

Query: 98  AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
           A+QGLP S S  G+EL D    FG++ F ++I   RALEGE+ RTI+SIS + +ARVH+ 
Sbjct: 140 ASQGLPKSGS-VGFELMD-NQKFGISQFAEQINYQRALEGELERTIESISSVKSARVHLA 197

Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGK 215
           +P    F +    P+ASV++           +  AI H+V++AVP + +  VT+LD  G 
Sbjct: 198 IPKPSVFVRDKEAPSASVLVNLFPGRALDEGQVLAITHMVSSAVPEMPVKGVTILDQDGN 257

Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LLT       +    L   Q I+   +  I+  LA   G  N  S V A+++    +   
Sbjct: 258 LLTQPSTGGGLDASQLKYRQQIERNTQQRIDAILAPLFGAGNAHSQVSADIDFSRSEQTS 317

Query: 276 IVYDPDS----KVERSIRLSKDAQRSE----------TSQPESAVTVEQNMPHVSDRKVP 321
             Y P+        RS + S   + S+          ++QP    +   N P+ +   V 
Sbjct: 318 ENYGPNGNPQQAAIRSQQSSTATEMSQGGASGVPGALSNQPPQPASAPINAPNGASSSV- 376

Query: 322 LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI 381
              +   +D+K+  +NYE++            + RLS+AVVVN  R+ +  G +  Q   
Sbjct: 377 --TTTPVSDRKDMTTNYELDKTVRHLEQPMGGIRRLSVAVVVNYLRVVDGKGHATMQPVS 434

Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441
              LA++N++V  A G +++RGD++ + +  F      N+        D+L+ +      
Sbjct: 435 ADKLAQVNQLVKDAMGFDAQRGDSVNVVNSPFTAELDPNADLPWWRTPDMLALYKQIATY 494

Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501
             +  V   L   +   ALRR     +         +   P P    +  G+   +    
Sbjct: 495 LGIGAVALFLYFVMVKPALRRAFPPPEP------VVAAALPSPDEPILLDGIPAAER--A 546

Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH-MIEINEERFAKILRKWARSE 553
            + N +I +    L +  N+    + +L     +   + +  A +++ W   E
Sbjct: 547 GNGNVEIDNSDSELLALENAKHKYERNLEFARNIARQDPKIVATVVKNWVTDE 599


>gi|218892935|ref|YP_002441804.1| flagellar MS-ring protein [Pseudomonas aeruginosa LESB58]
 gi|218773163|emb|CAW28975.1| Flagella M-ring outer membrane protein precursor [Pseudomonas
           aeruginosa LESB58]
          Length = 598

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 131/593 (22%), Positives = 255/593 (43%), Gaps = 67/593 (11%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F  + + +   R + L   +   + +  A   +   P Y  LY  L   D NR+  AL
Sbjct: 27  LSFLDNLSEMTMLRQIGLLVGLAASVAIGFAVVLWSQQPDYKPLYGSLNGVDANRVVEAL 86

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + A+I +++  N  ++ V +  +G+AR+ +A+ G+  + +N G+E+ DK  + G + FM+
Sbjct: 87  TAADIPYKVEPNSGALLVKADDLGRARMKVASAGVAPTDNNVGFEILDKEQALGTSQFME 146

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
                R LEGE+ART+ S++ + AARVH+ +P    F +   +P+ASV++        + 
Sbjct: 147 ATNYRRGLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDDRKPSASVLVELYPGRSLEP 206

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP LD   VTV+D  G LL+  +   E  + GK     + ++  +  
Sbjct: 207 SQVMAIVNLVATSVPELDKSQVTVVDQKGNLLSDQQELSELTMAGKQFDFTRRMEGLLTQ 266

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            ++  L   LG   +++ V A+++    +    +Y+PD    RS + + +  R  +S P+
Sbjct: 267 RVHNILQPVLGNGRYKAEVSADVDFSAVESTSEMYNPDQPALRSEQRNNEE-RQNSSGPQ 325

Query: 304 SAVTVEQNMPHVSDRKVPLPRSL---------------------------------ENTD 330
                  N P           +                                      
Sbjct: 326 GVPGALSNQPPGPASAPQQATASAPADYVAPGQPLKDANGQTIIDPKTGKPELAPYPTDK 385

Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEIN 389
           + +   NYE++     T     +L RLS+AVV++     +   G  + Q      LA   
Sbjct: 386 RDQTTRNYELDRSISYTKQQQGRLRRLSVAVVLDDQMKVDAKTGEVSHQPWSADELARFT 445

Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALVF 445
           ++V  + G ++ RGD++++ +  F   Q     ++    Q  F DI+ +           
Sbjct: 446 RLVQDSVGYDASRGDSVSVINAPFAPVQAEEIDSIPFYSQPWFWDIVKQ----------- 494

Query: 446 LVGTLLVTFLGLHALRR-LHNIDDAKKGE--VGGKSILSPPPISSAVTTGLMPNDNIALD 502
           ++G L +  L    LR  L NI    KG+   GG        +  +   G + +D +++ 
Sbjct: 495 VLGVLFILVLVFGVLRPVLSNITGGGKGKSLAGGGGRDGDLALGESGLEGSLADDRVSIG 554

Query: 503 SSNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
             +  +  S +    +++N+         + +++  +  R A+++++W  ++ 
Sbjct: 555 GPSSILLPSPTEGYDAQLNA---------IKNLVAQDPGRVAQVVKEWINADE 598


>gi|296157432|ref|ZP_06840267.1| flagellar M-ring protein FliF [Burkholderia sp. Ch1-1]
 gi|295892204|gb|EFG71987.1| flagellar M-ring protein FliF [Burkholderia sp. Ch1-1]
          Length = 600

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 140/531 (26%), Positives = 232/531 (43%), Gaps = 29/531 (5%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
             +  +P Y  LY  L   D   I  AL  ANI ++ SD G +I VP+  V + R+ LA+
Sbjct: 81  FLWSRAPDYKVLYSNLSDRDGGAIITALQAANIPYKFSDAGGAILVPAEQVHEMRLRLAS 140

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
           QGLP S S  G+EL D    FG++ F ++I   RALEGE+ RT++SIS + +ARVH+ +P
Sbjct: 141 QGLPKSGS-VGFELMD-NQKFGISQFAEQINYQRALEGELERTVESISSVKSARVHLAIP 198

Query: 160 DMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
               F +    P+ASV++           +  AI H+V++AVP++ +  VT+LD  G LL
Sbjct: 199 KPSVFVRDKEAPSASVLVNLYPGRALDEGQVLAITHMVSSAVPDMPVKGVTILDQDGNLL 258

Query: 218 TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
           T       +    L   Q I+   +  I+  LA   G  N  S V A+++    +     
Sbjct: 259 TQPSTGNGLDASQLKYRQQIERSTQQRIDAILAPLFGSGNAHSQVSADIDFSHSEQTSEN 318

Query: 278 YDPDS----KVERSIRLSKDAQRSE----------TSQPESAVTVEQNMPHVSDRKVPLP 323
           Y P+        RS + S   + S+          ++QP    +   N P  +      P
Sbjct: 319 YGPNGNPQQAAIRSQQSSSATEMSQGAASGVPGALSNQPPQPASAPINAPTGASGVTTTP 378

Query: 324 RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS 383
            S    D+K+  +NYE++            ++RLS+AVVVN  R+ +  G +  Q     
Sbjct: 379 VS----DRKDSTTNYELDKTVRHLERPMGGIKRLSVAVVVNYLRVVDAKGHATMQPVTAD 434

Query: 384 YLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINAL 443
            LA++N++V  A G +  RGD++ + +  F  +   N+        D+++          
Sbjct: 435 KLAQVNQLVKDAMGFDQARGDSVNVVNSAFSTDLDPNADLPWWRTPDMIALAKQIATYLG 494

Query: 444 VFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDS 503
           +  V   L   +   ALRR     +         +   P P    +  G+   + +    
Sbjct: 495 IGAVALFLYFVMVKPALRRAFPPPEPP------VAGALPSPDEPILLDGIPAAERVGAGG 548

Query: 504 SNQDIFSHSRNLQSRINSYVSKQSDLRLLH-MIEINEERFAKILRKWARSE 553
           S+         L +  NS    + +L     +   + +  A +++ W   E
Sbjct: 549 SSVAELESDSELLALENSKHKYERNLEFARNIARQDPKIVATVVKNWVSDE 599


>gi|209522223|ref|ZP_03270859.1| flagellar M-ring protein FliF [Burkholderia sp. H160]
 gi|209497337|gb|EDZ97556.1| flagellar M-ring protein FliF [Burkholderia sp. H160]
          Length = 555

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 139/560 (24%), Positives = 239/560 (42%), Gaps = 27/560 (4%)

Query: 9   QFFKSGTSLGRTR---ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
            F +  + L + R      L   I + + +      +  +P Y  LY  L   D   I  
Sbjct: 7   NFGQRLSGLAQMRGNPRAPLVFAIALLVAVVAGLFLWSRTPDYKVLYSNLSDRDGGSIIA 66

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
           AL +ANI +++SD+G +I VP+  V + R+ LA+QGLP S S  G+EL D    FG++ F
Sbjct: 67  ALQQANIPYKLSDSGGAILVPAEQVHEMRLRLASQGLPKSGS-VGFELMD-NQKFGISQF 124

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
            ++I   R+LEGE+ RTI+SIS + +ARVH+ +P    F +    P+A+V++      V 
Sbjct: 125 NEQINYQRSLEGELERTIESISSVKSARVHLAIPKPSVFVRDKEAPSAAVLVNLYPGRVL 184

Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEM 243
                 AI H+V++AVP + +  VT+LD  G LLT       +    L   Q I+   + 
Sbjct: 185 DEGQVVAITHMVSSAVPEMPVRGVTILDQDGNLLTQPSNGSGLDATQLKFRQQIERNTQQ 244

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            I+  LA   G  N RS V A+++    +     Y P+   +++   S+ +  +      
Sbjct: 245 RIDAILAPLFGPGNARSQVSADIDFSHSEQTSENYGPNGSPQQAAIRSQQSSSATEMSQG 304

Query: 304 SAVTVE---QNMPH-------VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
            A  V     N P        V+        +   +D K+  +NYE++            
Sbjct: 305 GASGVPGALSNQPPQPASAPIVAANGASSVATTPISDHKDSTTNYELDKTVRHVDQPMGG 364

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           + RLS+AVVVN  R+ +  G    Q      L +I ++V  A G ++ RGD++ + +  F
Sbjct: 365 IHRLSVAVVVNYLRVVDAKGHVTMQPVSADKLMQITQLVKDAMGFDASRGDSVNVVNSAF 424

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
             +   N+        D+L+ +        +  V   L   +   ALRR           
Sbjct: 425 TTDLDPNADLPWWRTPDMLALYKQIATYLGIGAVALFLYFVMVKPALRR-------AFPP 477

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
                     P    +  G+   +    + +  +I + S  L      +  +++      
Sbjct: 478 PPEPVPALMSPDEPVLLDGIPAEER---EGAIVEIETDSETLALENAKHKYERNLEFARS 534

Query: 534 MIEINEERFAKILRKWARSE 553
           +   + +  A +++ W   E
Sbjct: 535 IARQDPKIVATVVKNWVSDE 554


>gi|307731342|ref|YP_003908566.1| flagellar M-ring protein FliF [Burkholderia sp. CCGE1003]
 gi|307585877|gb|ADN59275.1| flagellar M-ring protein FliF [Burkholderia sp. CCGE1003]
          Length = 600

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 142/533 (26%), Positives = 241/533 (45%), Gaps = 30/533 (5%)

Query: 38  AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97
               +  +P Y  LY  L   D   I  AL +ANI ++ SD G +I VP+  V + R+ L
Sbjct: 80  GLFLWSRAPDYKVLYSNLSDRDGGAIITALQQANIPYKFSDAGGAILVPAEQVHEMRLRL 139

Query: 98  AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
           A+ GLP S S  G+EL D    FG++ F ++I   RALEGE+ RTIQSIS + +ARVH+ 
Sbjct: 140 ASLGLPKSGS-VGFELMD-NQKFGISQFAEQINYQRALEGELERTIQSISSVKSARVHLA 197

Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGK 215
           +P    F +    P+ASV++           +  AI H+V++AVP + +  VT+LD  G 
Sbjct: 198 IPKPSVFVRDKEAPSASVLVNLYPGRALDEGQVLAITHMVSSAVPEMPVKGVTILDQDGN 257

Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LLT   +   +    L   Q I+   +  I+  LA   G  N  S V A+++    +   
Sbjct: 258 LLTQPSVGGGLDASQLKYRQQIERNTQQRIDAILAPLFGAGNAHSQVSADIDFSRSEQTS 317

Query: 276 IVYDPDS----KVERSIRLSKDAQRSE----------TSQPESAVTVEQNMPHVSDRKVP 321
             Y P+        RS + S   + S+          ++QP    +   N P+ +   V 
Sbjct: 318 EAYGPNGNPQQAAIRSQQSSTATEMSQGGASGVPGALSNQPPQPASAPINAPNGASSSV- 376

Query: 322 LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI 381
              +   +D+K+  +NYE++            ++RLS+AVVVN  R+ +  GR+  Q   
Sbjct: 377 --TTTPVSDRKDMTTNYELDKTVRHLEQPMGGIKRLSVAVVVNYLRVVDGKGRATMQPVS 434

Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441
              LA++N++V  A G +++RGD++ + +  F      N+        D+L+ +      
Sbjct: 435 ADKLAQVNQLVKDAMGFDAQRGDSVNVVNSPFTAELDPNADLPWWRTPDMLALYKQIATY 494

Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501
             +  V   L   +   ALRR     +         +   P P    +  G+   +  A 
Sbjct: 495 LGIGAVALFLYFVMVKPALRRAFPPPEP------VVAAALPSPDEPILLDGIPAAERAA- 547

Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH-MIEINEERFAKILRKWARSE 553
            +++ +I +    L +  N+    + +L     +   + +  A +++ W   E
Sbjct: 548 -NASVEIDTGDAELLALENAKHKYERNLEFARSIARQDPKIVATVVKNWVTDE 599


>gi|291617848|ref|YP_003520590.1| FliF [Pantoea ananatis LMG 20103]
 gi|291152878|gb|ADD77462.1| FliF [Pantoea ananatis LMG 20103]
          Length = 572

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 138/548 (25%), Positives = 241/548 (43%), Gaps = 56/548 (10%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P+Y  L+  L   D   I   L++ N+ +R +DNG ++ VP   V + R+ LA Q
Sbjct: 47  LWAKTPNYSVLFSNLSNEDGGAIVTQLTQMNVPYRFADNGGALMVPEDKVHELRLRLAEQ 106

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP    N G+EL DK   FG++ F +++   RALEGE+ARTI+S+  +  ARVH+ MP 
Sbjct: 107 GLPKGG-NVGFELLDKE-KFGISQFSEQVNYQRALEGELARTIESLGPVKTARVHLAMPK 164

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +             +AI H+V+++V  L  G+VTV+D +G LLT
Sbjct: 165 PTLFVREQKAPSASVTLTLQPGRALDEGQIQAITHMVSSSVAGLPPGNVTVVDQSGHLLT 224

Query: 219 ANEM-ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            ++   R++    L     ++   +  I   L   LG  N  + V A++N DT +  +  
Sbjct: 225 RSDAVGRDLNDAQLKYAAEVEARYQQRIEAILNPILGQGNVHAQVTAQINFDTSEQTDEK 284

Query: 278 YDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVSDRK--------------- 319
           Y P+   + +   S+    SE S    P        N P  ++                 
Sbjct: 285 YQPNGDPKNASIRSQQTSTSEQSGSPYPGGVPGALSNQPAPANTAPVNAPNTNAANGQNA 344

Query: 320 -------------VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
                             S+    ++++  NYE++     T  +   ++RLS+AVVVN  
Sbjct: 345 NGQNNAANGQRTSTASASSVPTNSRRDDTVNYELDRTIRHTKMNVGDVQRLSVAVVVNYR 404

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
              +    + +    +  L +I  +   A G + +RGD++ + +  F   +       ++
Sbjct: 405 EDDKGKALALN----EQQLKQIEDLTREAMGYSQQRGDSVNVVNSQFNTTE---PTVSEL 457

Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486
            F    S  F  +I+A  +L+  L+   L    +R  H +   +  E G +S     P  
Sbjct: 458 PFWQQQS-FFDQLISAGKWLLVALVAFILYRKTVRP-HVLRKKEAEESGCRS--DGCPCC 513

Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546
           +A  +G +         + Q      R   +R+++ V  Q   R+  M E +    A ++
Sbjct: 514 TAKRSGSLQ------RPAQQREMEQERKTNNRMSAEVMSQ---RIRDMSENDPRVVALVI 564

Query: 547 RKWARSEI 554
           R+W  +E+
Sbjct: 565 REWMGNEL 572


>gi|75674797|ref|YP_317218.1| flagellar MS-ring protein [Nitrobacter winogradskyi Nb-255]
 gi|74419667|gb|ABA03866.1| flagellar FliF M-ring protein [Nitrobacter winogradskyi Nb-255]
          Length = 541

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 142/549 (25%), Positives = 248/549 (45%), Gaps = 10/549 (1%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +  LL F K    LG +R++ + +V  V I  F      V +P    L+  L V D + I
Sbjct: 1   MQGLLAFLKG---LGASRLMAMVAVTAVLIGFFAFVIMRVTTPQMTTLFTDLSVEDSSGI 57

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    I F + ++G+ I VP   V + R+ LA  GLP      GYE+FDK ++ G T
Sbjct: 58  IKDLERQAIPFELRNDGAVIMVPKDKVTRLRMKLAEAGLPKGGG-VGYEIFDKSDALGTT 116

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
           SF+Q I R+RALEGE+ARTI++I  +  ARVH+V+P+   F +   +P+AS+++R     
Sbjct: 117 SFVQNINRLRALEGELARTIRAIDRVQDARVHLVLPERPLFTREAPQPSASIVLRVRGGL 176

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEM 243
             +   AIRHLVA+AV  L    V+++D TG+LL                  A +  +  
Sbjct: 177 EPQQIRAIRHLVASAVNGLKPQRVSIVDETGQLLADGSATDADGVSGDERRAAFEKRMRS 236

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            +   +++ +G    R  + A+ + +        +DP+ +V RS +  +++  S T+   
Sbjct: 237 QVEAIVSSVVGNGRARVQLSADFDYNKITQTSDKFDPEGRVLRSSQTREES--SLTADNN 294

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
             VTV   +P       P   + + + K EE +NYEI+  +     +  ++ R+S+AV+V
Sbjct: 295 GQVTVNNELPGNQPSDNPN-TARDQSKKSEETNNYEISRTTKTEVTEAGRVNRISVAVLV 353

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           +        G+   + +    L  I  +V +A G + +RGD + + ++ F E  +     
Sbjct: 354 DGAYARNDKGQMVYEERSQEQLDRIATLVRSAIGFDQKRGDQVEVVNLKFAEPPVVVPLA 413

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
               ++ +++     V+      V  LL   +    +R L     A +         +  
Sbjct: 414 EPTGWLGMMTLTKDDVMYVFELGVMALLGLVVTFMVIRPLVQRILAAEPATPSAQPAAAL 473

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
           P+ +  +          +  SN    +      +++   V  QS  R+  + E N    A
Sbjct: 474 PVPADASAQPTETGQNLIPGSNA---TAQLIDVAQVQGQVHAQSVHRVGELAERNPAETA 530

Query: 544 KILRKWARS 552
            I+R+W   
Sbjct: 531 SIIRQWLAE 539


>gi|170700811|ref|ZP_02891802.1| flagellar M-ring protein FliF [Burkholderia ambifaria IOP40-10]
 gi|170134298|gb|EDT02635.1| flagellar M-ring protein FliF [Burkholderia ambifaria IOP40-10]
          Length = 587

 Score =  439 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 126/528 (23%), Positives = 218/528 (41%), Gaps = 29/528 (5%)

Query: 38  AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97
           A   +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VPS+ V + R+ L
Sbjct: 76  ALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSNQVHETRLKL 135

Query: 98  AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
           AA GLP   S  G+EL D    FG++ F +++   RALEGE+ RTI+SI+ +  ARVH+ 
Sbjct: 136 AALGLPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLA 193

Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
           +P    F +    P+ASV +      V      +AI  +V++ VP++   +VT++D  G 
Sbjct: 194 IPKPSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGN 253

Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LLT       +    L  VQ ++   +  I+  LA   G  N RS V A+++    +   
Sbjct: 254 LLTQTASASGLDASQLKYVQQVEGNTQKRIDAILAPIFGTGNARSQVSADIDFSKLEQTS 313

Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPH-------VSDRKVPLPRS 325
             Y P+   +++   S+    +       A  V     N P        V+       +S
Sbjct: 314 ESYGPNGTPQQAAIRSQQTSSATELAQGGASGVPGALSNTPPQPASAPIVAGNGQNGAQS 373

Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385
              +D+K++ +NYE++            ++RLS+AVVVN   + +  G    Q      L
Sbjct: 374 TPVSDRKDQTTNYELDKTIRHVEQPMGNVKRLSVAVVVNYQPVADAKGHVTMQPLPPPKL 433

Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445
           A+I ++V  A G + +RGD++ + +  F       +        D+++          + 
Sbjct: 434 AQIEQLVKDAMGYDEKRGDSVNVVNSAFSSVGDPYADLPWWRQPDMIAMAKEAAKWLGIA 493

Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505
                L       A+RR     +     +             A      P+         
Sbjct: 494 AAAAALYFMFVRPAMRRAFPPPEPVAPALAAPDDPVALDGLPAPDKADEPDP-------- 545

Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             +     N ++R    +          +   + +  A +++ W   E
Sbjct: 546 --LLLGFENEKNRYERNLDYA-----RTIARQDPKIVATVVKNWVSDE 586


>gi|292487992|ref|YP_003530869.1| flagellar M-ring protein FliF [Erwinia amylovora CFBP1430]
 gi|292899212|ref|YP_003538581.1| flagellar M-ring protein [Erwinia amylovora ATCC 49946]
 gi|291199060|emb|CBJ46171.1| flagellar M-ring protein [Erwinia amylovora ATCC 49946]
 gi|291553416|emb|CBA20461.1| Flagellar M-ring protein FliF [Erwinia amylovora CFBP1430]
 gi|312172117|emb|CBX80374.1| Flagellar M-ring protein FliF [Erwinia amylovora ATCC BAA-2158]
          Length = 573

 Score =  439 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 136/550 (24%), Positives = 241/550 (43%), Gaps = 58/550 (10%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  L+  L   D   I   L++ N+ ++  D G ++ VP++ V + R+ LA+Q
Sbjct: 46  LWAKQPDYRVLFSNLSNEDGGTIVTQLTQMNVPYKFDDRGGALLVPAAQVHELRLRLASQ 105

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL DK   FG++ F +++   RALEGE+ARTI ++  +  ARVH+ MP 
Sbjct: 106 GLPKGGA-VGFELLDKE-KFGISQFSEQVNYQRALEGELARTISTLGPVKDARVHLAMPK 163

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +              A+ H+V+++V  +  G+VTV+D +G+LLT
Sbjct: 164 PTLFVREQKSPSASVTLALQPGRALDEGQINAVVHMVSSSVAGMPPGNVTVVDQSGRLLT 223

Query: 219 ANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            N+   R++    L     ++   +  I   L   LG  N  + V A+++ + ++  +  
Sbjct: 224 QNDPGGRDLNDTQLKYANDVETRYQQRIEAILGPILGNGNVHAQVTAQIDFNKREKTDEQ 283

Query: 278 YDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPHVSDRKV-------------- 320
           Y P++  +R    S+    SE     SA  V     N P  ++                 
Sbjct: 284 YSPNTNPDRQAIRSRQTSNSEQLGGPSAGGVPGALSNQPAPANAAPVTTANPNANNANAA 343

Query: 321 ----------------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
                              +++ ++ + +  +NYE+N   + T  +  +++RLS+AVVVN
Sbjct: 344 NAANANNGQPANNAASGAQKTVPSSTRSDNTTNYEVNRTILHTKMNVGEVQRLSVAVVVN 403

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424
               T+  G+       DS + +I  +   A G + +RGD++ + +  F +N    +   
Sbjct: 404 --FRTDAAGKPI--ALKDSQIKQIENLTREAMGFSEQRGDSLNVVNSQFTDNSDLAAELP 459

Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPP 484
                  + + F      LV +V  +L   L    LRR      A +   G     S   
Sbjct: 460 FWKQPAFIDQLFNAGRWLLVLIVAFILYRKLVSPQLRRKAEQQKAAEEAAGNALRSSTQD 519

Query: 485 ISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAK 544
              AV             S ++D  +  R  Q R+++ V  Q   R+  M E +    A 
Sbjct: 520 EGVAV-------------SLSKDELNQERKSQHRMSAEVLSQ---RIREMSENDPRVVAL 563

Query: 545 ILRKWARSEI 554
           ++R+W + E+
Sbjct: 564 VIRQWMKDEL 573


>gi|187925740|ref|YP_001897382.1| flagellar MS-ring protein [Burkholderia phytofirmans PsJN]
 gi|187716934|gb|ACD18158.1| flagellar M-ring protein FliF [Burkholderia phytofirmans PsJN]
          Length = 603

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 136/535 (25%), Positives = 230/535 (42%), Gaps = 31/535 (5%)

Query: 38  AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97
               +  +P Y  LY  L   D   I  AL  ANI ++ SD G +I VP+  V + R+ L
Sbjct: 80  GLFLWSRAPDYKVLYSNLSDRDGGAIITALQAANIPYKFSDAGGAILVPAEQVHEMRLRL 139

Query: 98  AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
           A+QGLP S S  G+EL D    FG++ F ++I   RALEGE+ RTI+SIS + +ARVH+ 
Sbjct: 140 ASQGLPKSGS-VGFELMD-NQKFGISQFAEQINYQRALEGELERTIESISSVKSARVHLA 197

Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGK 215
           +P    F +    P+ASV++           +  AI H+V++AVP++ +  VT+LD  G 
Sbjct: 198 IPKPSVFVRDKEAPSASVLVNLYPGRALDEGQVLAITHMVSSAVPDMPVKGVTILDQDGN 257

Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LLT       +    L   Q I+   +  I+  LA   G  N  S V A+++    +   
Sbjct: 258 LLTQLSTGSGLDASQLKYRQQIERSTQQRIDAILAPLFGSGNAHSQVSADIDFSHSEQTS 317

Query: 276 IVYDPDS----KVERSIRLSKDAQRSE----------TSQPESAVTVEQNMPHVSDRKVP 321
             Y P+        RS + S   + S+          ++QP    +   N P+ +     
Sbjct: 318 ENYGPNGNPQQAAIRSQQSSSATEMSQGAASGVPGALSNQPPQPASAPINAPNGASGVTT 377

Query: 322 LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI 381
            P S    D+K+  +NYE++            ++RLS+AVVVN  R+ +  G +  Q   
Sbjct: 378 TPVS----DRKDSTTNYELDKTVRHLERPMGGIKRLSVAVVVNYLRVVDAKGHATMQPVT 433

Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441
              LA++N++V  A G +  RGD++ + +  F      N+        D+++        
Sbjct: 434 ADKLAQVNQLVKDAMGFDQARGDSVNVVNSPFSTEVDPNADLPWWRTPDMIALAKQIATY 493

Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501
             +  V   L   +   ALRR     +               P    +  G+   + +  
Sbjct: 494 LGIGAVALFLYFVMVKPALRRAFPPPEPA------AVAALASPDEPILLDGIPAAERMGA 547

Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRL---LHMIEINEERFAKILRKWARSE 553
           + ++  +     + +         + +  L     +   + +  A +++ W   E
Sbjct: 548 NGTSSSVAELEGDSELLALESAKHKYERNLEFARSIARQDPKIVATVVKNWVSDE 602


>gi|172062015|ref|YP_001809667.1| flagellar MS-ring protein [Burkholderia ambifaria MC40-6]
 gi|171994532|gb|ACB65451.1| flagellar M-ring protein FliF [Burkholderia ambifaria MC40-6]
          Length = 587

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 126/528 (23%), Positives = 219/528 (41%), Gaps = 29/528 (5%)

Query: 38  AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97
           A   +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VPS+ V + R+ L
Sbjct: 76  ALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSNQVHETRLKL 135

Query: 98  AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
           AA GLP   S  G+EL D    FG++ F +++   RALEGE+ RTI+SI+ +  ARVH+ 
Sbjct: 136 AALGLPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLA 193

Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
           +P    F +    P+ASV +      V      +AI  +V++ VP++   +VT++D  G 
Sbjct: 194 IPKPSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGN 253

Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LLT       +    L  VQ ++H  +  I+  LA   G  N RS V A+++    +   
Sbjct: 254 LLTQTASASGLDASQLKYVQQVEHNTQKRIDAILAPIFGTGNARSQVSADIDFSKLEQTS 313

Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPH-------VSDRKVPLPRS 325
             Y P+   +++   S+    +       A  V     N P        V+       +S
Sbjct: 314 ESYGPNGTPQQAAIRSQQTSSATELAQGGASGVPGALSNTPPQPASAPIVAGNGQNGAQS 373

Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385
              +D+K++ +NYE++            ++RLS+AVVVN   + +  G    Q      L
Sbjct: 374 TPVSDRKDQTTNYELDKTIRHVEQPMGNVKRLSVAVVVNYQPVADAKGHVTMQPLPPPKL 433

Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445
           A++ ++V  A G + +RGD++ + +  F       +        D+++          + 
Sbjct: 434 AQVEQLVKDAMGYDEKRGDSVNVVNSAFSSVGDPYADLPWWRQPDMIAMAKEAAKWLGIA 493

Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505
                L       A+RR     +     +             A      P+         
Sbjct: 494 AAAAALYFMFVRPAMRRAFPPPEPVAPALAAPDDPVALDGLPAPDKADEPDP-------- 545

Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             +     N ++R    +          +   + +  A +++ W   E
Sbjct: 546 --LLLGFENEKNRYERNLDYA-----RTIARQDPKIVATVVKNWVSDE 586


>gi|206558926|ref|YP_002229686.1| flagellar MS-ring protein [Burkholderia cenocepacia J2315]
 gi|198034963|emb|CAR50835.1| flagellar M-ring protein FliF [Burkholderia cenocepacia J2315]
          Length = 587

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 131/528 (24%), Positives = 222/528 (42%), Gaps = 28/528 (5%)

Query: 38  AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97
           A   +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VPS+ V + R+ L
Sbjct: 75  ALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSNQVHETRLKL 134

Query: 98  AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
           AA GLP   S  G+EL D    FG++ F ++I   RALEGE+ RTI+SI+ +  ARVH+ 
Sbjct: 135 AAMGLPKGGS-VGFELMD-NQKFGISQFAEQINYQRALEGELQRTIESINAVRGARVHLA 192

Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
           +P    F +    P+ASV +      V      +AI  +V++ VP++   +VT++D  G 
Sbjct: 193 IPKPSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGN 252

Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LLT       +    L  VQ ++H  +  I+  LA   G  N RS V A+L+    +   
Sbjct: 253 LLTQTASASGLDASQLKYVQQVEHNTQKRIDAILAPIFGAGNARSQVSADLDFSKIEQTS 312

Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPH-------VSDRKVPLPRS 325
             Y P+   +++   S+    +       A  V     N P        V+      P++
Sbjct: 313 ESYGPNGTPQQAAIRSQQTSSATELAQGGASGVPGALSNTPPQPASAPIVAGNGQNAPQT 372

Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385
              +D+K++ +NYE++     T      ++RLS+AVVVN   + +  G    Q    + L
Sbjct: 373 TPVSDRKDQTTNYELDKTIRHTEQPMGSVKRLSVAVVVNYQPVADAKGHVTMQPLPPAKL 432

Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445
           A++ ++V  A G + +RGD++ + +  F       +        D+++          + 
Sbjct: 433 AQVEQLVKDAMGYDEKRGDSVNVVNSAFSTVSDPYADLPWWRQPDMIAMAKEAAKWLGIA 492

Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505
                L       A+RR     +     +             A        D + L    
Sbjct: 493 AAAAALYFMFVRPAMRRAFPPPEPAAPALAAPEDAVALDGLPAPDKAAEEPDPLLL---- 548

Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                     ++  N Y       R   +   + +  A +++ W   E
Sbjct: 549 --------GFENEKNRYERNLDYAR--TIARQDPKIVATVVKNWVSDE 586


>gi|295098292|emb|CBK87382.1| flagellar basal-body M-ring protein/flagellar hook-basal body
           protein (fliF) [Enterobacter cloacae subsp. cloacae NCTC
           9394]
          Length = 543

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 131/543 (24%), Positives = 233/543 (42%), Gaps = 51/543 (9%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
              +  SP Y  LY  L   D   I   L++ NI +R +DNG ++ VP+  V + R+ LA
Sbjct: 26  MVLWAKSPDYRTLYSNLSDQDGGAIVTQLTQMNIPYRFADNGGALEVPADKVHELRLRLA 85

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
            QGLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ M
Sbjct: 86  QQGLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAM 143

Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           P    F +    P+ASV +              A+ HLV++AV  L  G+VT++D +G L
Sbjct: 144 PKPSLFVREQKSPSASVTVNLEPGRALDEGQISAVTHLVSSAVAGLPPGNVTLVDQSGHL 203

Query: 217 LT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LT +N   R++    L     ++  ++  I   L   +G  N  + V A+++   ++  E
Sbjct: 204 LTQSNTAGRDLNDAQLKYAADVEGRLQRRIEAILGPVVGSSNVHAQVTAQIDFSNKEQTE 263

Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVSDRKV------------ 320
             Y P+    R++  S+    +E      P        N P  ++               
Sbjct: 264 EQYAPNGDASRAVLRSRQINETEQVGGQYPGGVPGALSNQPAPANAAPISTPPANPQNGQ 323

Query: 321 --------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372
                       +      + E +NYE++     T  +   ++RLS+AVVVN   L +  
Sbjct: 324 QTNQQTTSTANSTGPRNSSRNETTNYEVDRTIRHTKLNTGDIQRLSVAVVVNYKTLPDGK 383

Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDIL 432
                       + +I  +   A G + +RGDT+ + +  F      +    ++ F    
Sbjct: 384 PL----PLTAEQMKQIEDLTREAMGFSEKRGDTLNVVNSPFNP---VDETGGELPFWQQQ 436

Query: 433 SRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTG 492
           +  F  +++A  +L+  ++   L    +R       A+  +   +   + P    AV   
Sbjct: 437 A-FFDQLMSAGRWLLVLIVAWLLWRKGVRPQLQRR-AEAEKAALEQKNARPDEEEAVEVR 494

Query: 493 LMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
           L  ++ +    +NQ           R+ + V  Q   R+  M + +    A ++R W  +
Sbjct: 495 LSKDEQMQQRRANQ-----------RMGAEVMSQ---RIREMSDNDPRVVALVIRGWMGN 540

Query: 553 EIE 555
           E E
Sbjct: 541 EHE 543


>gi|115353160|ref|YP_774999.1| flagellar MS-ring protein [Burkholderia ambifaria AMMD]
 gi|115283148|gb|ABI88665.1| flagellar M-ring protein FliF [Burkholderia ambifaria AMMD]
          Length = 587

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 127/528 (24%), Positives = 219/528 (41%), Gaps = 29/528 (5%)

Query: 38  AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97
           A   +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VPS+ V + R+ L
Sbjct: 76  ALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSNQVHETRLKL 135

Query: 98  AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
           AA GLP   S  G+EL D    FG++ F +++   RALEGE+ RTI+SI+ +  ARVH+ 
Sbjct: 136 AALGLPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLA 193

Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
           +P    F +    P+ASV +      V      +AI  +V++ VP++   +VT++D  G 
Sbjct: 194 IPKPSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGN 253

Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LLT       +    L  VQ ++   +  I+  LA   G  N RS V A+++    +   
Sbjct: 254 LLTQTASASGLDASQLKYVQQVERNTQKRIDSILAPIFGTGNARSQVSADIDFSKLEQTS 313

Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPH-------VSDRKVPLPRS 325
             Y P+   +++   S+    +       A  V     N P        V+       +S
Sbjct: 314 ESYSPNGTPQQAAIRSQQTSSATELAQGGASGVPGALSNTPPQPASAPIVAGNGQNGAQS 373

Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385
              +D+K++ +NYE++            ++RLS+AVVVN   + +  G    Q      L
Sbjct: 374 TPVSDRKDQTTNYELDKTIRHVEQPMGNVKRLSVAVVVNYQPVADAKGHVTMQPLPPPKL 433

Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445
           A++ ++V  A G + +RGD++ + +  F       +        D+++          + 
Sbjct: 434 AQVEQLVKDAMGYDEKRGDSVNVVNSAFSSVGDPYADLPWWRQPDMIAMAKEAAKWLGIA 493

Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505
                L       A+RR     +     +         P       GL   D        
Sbjct: 494 AAAAALYFMFVRPAMRRAFPPPEPVAPALAA-------PDDPVALDGLPAPDRADEPDP- 545

Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             +     N ++R    +          +   + +  A +++ W   E
Sbjct: 546 --LLLGFENEKNRYERNLDYA-----RTIARQDPKIVATVVKNWVSDE 586


>gi|254246925|ref|ZP_04940246.1| Flagellar biosynthesis/type III secretory pathway lipoprotein
           [Burkholderia cenocepacia PC184]
 gi|124871701|gb|EAY63417.1| Flagellar biosynthesis/type III secretory pathway lipoprotein
           [Burkholderia cenocepacia PC184]
          Length = 587

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 131/528 (24%), Positives = 221/528 (41%), Gaps = 28/528 (5%)

Query: 38  AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97
           A   +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VPS  V + R+ L
Sbjct: 75  ALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSGQVHETRLKL 134

Query: 98  AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
           AA GLP   S  G+EL D    FG++ F ++I   RALEGE+ RTI+SI+ +  ARVH+ 
Sbjct: 135 AAMGLPKGGS-VGFELMD-NQKFGISQFAEQINYQRALEGELQRTIESINAVRGARVHLA 192

Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
           +P    F +    P+ASV +      V      +AI  +V++ VP++   +VT++D  G 
Sbjct: 193 IPKPSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGN 252

Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LLT       +    L  VQ ++H  +  I+  LA   G  N RS V A+L+    +   
Sbjct: 253 LLTQTASASGLDASQLKYVQQVEHNTQKRIDAILAPIFGAGNARSQVSADLDFSKIEQTS 312

Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPH-------VSDRKVPLPRS 325
             Y P+   +++   S+    +       A  V     N P        V+      P++
Sbjct: 313 ESYGPNGTPQQAAIRSQQTSSATELAQGGASGVPGALSNTPPQPASAPIVAGNGQNGPQT 372

Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385
              +D+K++ +NYE++     T      ++RLS+AVVVN   + +  G    Q    + L
Sbjct: 373 TPVSDRKDQTTNYELDKTIRHTEQPMGSVKRLSVAVVVNYQPVADAKGHVTMQPLPPAKL 432

Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445
           A++ ++V  A G + +RGD++ + +  F       +        D+++          + 
Sbjct: 433 AQVEQLVKDAMGYDEKRGDSVNVVNSAFSTASDPYADLPWWRQPDMIAMAKEAAKWLGIA 492

Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505
                L       A+RR     +     +             A        D + L    
Sbjct: 493 AAAAALYFMFVRPAMRRAFPPPEPAAPALAAPEDTVALDGLPAPEKAAEEADPLLL---- 548

Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                     ++  N Y       R   +   + +  A +++ W   E
Sbjct: 549 --------GFENEKNRYERNLDYAR--TIARQDPKIVATVVKNWVSDE 586


>gi|134297240|ref|YP_001120975.1| flagellar MS-ring protein [Burkholderia vietnamiensis G4]
 gi|134140397|gb|ABO56140.1| flagellar M-ring protein FliF [Burkholderia vietnamiensis G4]
          Length = 587

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 131/527 (24%), Positives = 222/527 (42%), Gaps = 29/527 (5%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
              +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VPS+ V + R+ LA
Sbjct: 77  LVLWSRTPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSNQVHETRLKLA 136

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
           A GLP   S  G+EL D    FG++ F +++   RALEGE+ RTI+SI+ +  ARVH+ +
Sbjct: 137 AMGLPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLAI 194

Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           P    F +    P+ASV I      V      +AI  +V++ VP++   +VT++D  G L
Sbjct: 195 PKPSVFVRDKEAPSASVFIDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGNL 254

Query: 217 LTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           LT       +    L  VQ ++   +  I+  LA   G  N RS V A+++    +    
Sbjct: 255 LTQPASASGLDASQLKYVQQVERNTQKRIDSILAPIFGTGNARSQVSADIDFSKLEQTSE 314

Query: 277 VYDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPH-------VSDRKVPLPRSL 326
            Y P+   +++   S+    +       A  V     N P        V+      P+S 
Sbjct: 315 SYGPNGTPQQAAIRSQQTSSATELAQGGASGVPGALSNTPPQPASAPIVAGNGQSGPQST 374

Query: 327 ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLA 386
             +D+K++ +NYE++            ++RLS+AVVVN   + +  G    Q    + LA
Sbjct: 375 PVSDRKDQTTNYELDKTIRHVEQPMGNVKRLSVAVVVNYQPVADAKGHVTMQPLPPAKLA 434

Query: 387 EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFL 446
           +I ++V  A G + +RGD++ + +  F       +        D++           +  
Sbjct: 435 QIEQLVKDAMGYDEKRGDSVNVVNSAFSTANDPYADLPWWRQPDMIEMAKEAAKWLGIAA 494

Query: 447 VGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQ 506
               L       A+RR                   PP  + A   G +  D +    +  
Sbjct: 495 AAAALYFMFVRPAMRR-------------AFPPPEPPAPALAAPEGTVVLDGLPAPEAAA 541

Query: 507 DIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
           +        ++  N Y       R   +   + +  A +++ W   E
Sbjct: 542 EPDPMLLGFENEKNRYERNLDYAR--TIARQDPKIVATVVKNWVSDE 586


>gi|317048599|ref|YP_004116247.1| flagellar M-ring protein FliF [Pantoea sp. At-9b]
 gi|316950216|gb|ADU69691.1| flagellar M-ring protein FliF [Pantoea sp. At-9b]
          Length = 571

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 130/546 (23%), Positives = 230/546 (42%), Gaps = 55/546 (10%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I   L++ NI ++ ++NG ++ VP+  V + R+ LA QG
Sbjct: 48  WAKAPDYRVLYSNLSDEDGGAIVTQLTQMNIPYQFAENGGALMVPADKVHELRLRLAQQG 107

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL DK   FG++ F +++   RALEGE+ARTI+++  + +AR+H+ MP  
Sbjct: 108 LPKGGS-VGFELMDKE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARIHLAMPKP 165

Query: 162 GSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV +             +A+ H+V+++VP L  G+VTV+D  G+LLT 
Sbjct: 166 TLFVREQKAPSASVTLNLQPGRALDEGQIQAVVHMVSSSVPGLPPGNVTVVDQAGRLLTR 225

Query: 220 NEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
           ++ E R++    L     ++   +  I   L   +G  N  + V A+LN D  +  +  Y
Sbjct: 226 SDSEGRDLNDAQLKYTAEVEGRYQQRIEAILNPIVGQGNVHAQVTAQLNFDRSEQTDEKY 285

Query: 279 DPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVSD------------------ 317
            P+   + S   S+    SE +    P        N P  ++                  
Sbjct: 286 QPNGSPDNSAIRSRQTSTSEQNGSPYPGGVPGALSNQPAPANTAPVTNPPANNANGQNAN 345

Query: 318 ---------RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368
                           S  +  ++++  NYE++     T  +   ++RLS+AVVVN    
Sbjct: 346 GQNNAANGTNTSTTQNSGPSNSRRDDTVNYELDRTIRHTKLNVGDVQRLSVAVVVNY--- 402

Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSF 428
                +  +    D  + +I  +   A G +  RGD+I + +  F   +           
Sbjct: 403 -RADDKGKEVALNDQQIKQIEDLTREAMGYSQTRGDSINVVNSPFNMTEPAGGDLPFWQQ 461

Query: 429 MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSA 488
                +  +     LV LV  +L   L    + R    + A       ++       + +
Sbjct: 462 QSFFDQLMSAGRWLLVALVAFILYRKLVRPQIMRKREQEQAAAEAAAARATAQEEEQAYS 521

Query: 489 VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRK 548
           V               ++D     R   +R+++ V  Q   R+  M E +    A ++R+
Sbjct: 522 VQ-------------LSKDELDQERKSTNRMSAEVMSQ---RIRDMSENDPRVVALVIRE 565

Query: 549 WARSEI 554
           W  +E+
Sbjct: 566 WMSNEL 571


>gi|107023995|ref|YP_622322.1| flagellar MS-ring protein [Burkholderia cenocepacia AU 1054]
 gi|116691082|ref|YP_836705.1| flagellar MS-ring protein [Burkholderia cenocepacia HI2424]
 gi|170734416|ref|YP_001766363.1| flagellar MS-ring protein [Burkholderia cenocepacia MC0-3]
 gi|105894184|gb|ABF77349.1| flagellar M-ring protein FliF [Burkholderia cenocepacia AU 1054]
 gi|116649171|gb|ABK09812.1| flagellar M-ring protein FliF [Burkholderia cenocepacia HI2424]
 gi|169817658|gb|ACA92241.1| flagellar M-ring protein FliF [Burkholderia cenocepacia MC0-3]
          Length = 587

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 131/528 (24%), Positives = 222/528 (42%), Gaps = 28/528 (5%)

Query: 38  AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97
           A   +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VPS  V + R+ L
Sbjct: 75  ALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSGQVHETRLKL 134

Query: 98  AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
           AA GLP   S  G+EL D    FG++ F ++I   RALEGE+ RTI+SI+ +  ARVH+ 
Sbjct: 135 AAMGLPKGGS-VGFELMD-NQKFGISQFAEQINYQRALEGELQRTIESINAVRGARVHLA 192

Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
           +P    F +    P+ASV +      V      +AI  +V++ VP++   +VT++D  G 
Sbjct: 193 IPKPSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGN 252

Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LLT       +    L  VQ ++H  +  I+  LA   G  N RS V A+L+    +   
Sbjct: 253 LLTQTASASGLDASQLKYVQQVEHNTQKRIDAILAPIFGAGNARSQVSADLDFSKIEQTS 312

Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPH-------VSDRKVPLPRS 325
             Y P+   +++   S+    +       A  V     N P        V+      P++
Sbjct: 313 ESYGPNGTPQQAAIRSQQTSSATELAQGGASGVPGALSNTPPQPASAPIVAGNGQNGPQT 372

Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385
              +D+K++ +NYE++     T      ++RLS+AVVVN   + +  G    Q    + L
Sbjct: 373 TPVSDRKDQTTNYELDKTIRHTEQPMGSVKRLSVAVVVNYQPVADAKGHVTMQPLPPAKL 432

Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445
           A++ ++V  A G +++RGD++ + +  F       +        D+++          + 
Sbjct: 433 AQVEQLVKDAMGYDAKRGDSVNVVNSAFSTVSDPYADLPWWRQPDMIAMAKEAAKWLGIA 492

Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505
                L       A+RR     +     +             A        D + L    
Sbjct: 493 AAAAALYFMFVRPAMRRAFPPPEPAAPALAAPEDTVALDGLPAPEKAAEEADPLLL---- 548

Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                     ++  N Y       R   +   + +  A +++ W   E
Sbjct: 549 --------GFENEKNRYERNLDYAR--TIARQDPKIVATVVKNWVSDE 586


>gi|328545497|ref|YP_004305606.1| flagellar M-ring protein [polymorphum gilvum SL003B-26A1]
 gi|326415238|gb|ADZ72301.1| Flagellar M-ring protein [Polymorphum gilvum SL003B-26A1]
          Length = 546

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 203/554 (36%), Positives = 322/554 (58%), Gaps = 14/554 (2%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M   +   +   +   LG  R++ LA + +  I       ++++ P    LY  L+  DV
Sbjct: 1   MPGREHAEKLLANLLELGTRRLIALALIGVATIATVGLGAYYLSRPQQTTLYTGLQGEDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           +RI  AL +A I + +S +G+++ V      +AR+ LA +GLP   +++GYELFD + S 
Sbjct: 61  SRIGSALQDAGIPYDVSSDGTAVLVNHGAAARARMLLAERGLPR-GADAGYELFDDLGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGE+ARTIQ + G+ AARVHIV+P+ GSFR+    P+ASV+IR+ 
Sbjct: 120 GLTSFMQEVTRVRALEGELARTIQLMQGVRAARVHIVLPEKGSFRRDQQPPSASVVIRSD 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL-SIVQAIQH 239
            P   ++A+AIRHLV+AAVP +    VTVLD++G LL A +   N     + S+  A+  
Sbjct: 180 VPDDLRTADAIRHLVSAAVPGMSADKVTVLDTSGGLLAAGKDPANASAGQIASLEAAVSG 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
            I+ NI K L  +LG+DNF+ +V A+LN D ++I E +YDP+S+VERS+R  +  + S+ 
Sbjct: 240 RIQENIRKTLTPYLGLDNFQVSVAADLNTDRRRIAETIYDPESRVERSVRTLRQNEMSQN 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           S  E+  TV+QN+P  +       RS E   ++EE  NYEI++K+I T+ D Y +ERLSI
Sbjct: 300 SSTETPTTVQQNLPDETVTAENGERSSEENQRREETVNYEISSKTIETSQDGYSVERLSI 359

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AV+V++ RL   LG S D   + + L EI ++V+++ G++SRRGD I ++ +DF+     
Sbjct: 360 AVLVDRARLEASLGGSPDPDTVAAQLVEIEQLVASSAGVSSRRGDVIKVSVVDFVNGGRA 419

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNIDDAKKGEVGGKS 478
                 +S  ++L R    +INA   L    L+ + GL   L  L     A   E+G  +
Sbjct: 420 MEPVPPMSVSELLIRQSGNLINAFAILTVAGLLIWFGLRPALAVLVPQKSAAPAEIGELA 479

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
           +++          GL    + A   +  D     ++L +++N    +    +L  +++++
Sbjct: 480 MMTE-------GEGLAGEFSEARQLAGPDHSGMLQDLTNKLN----QSPLKKLESLLDLD 528

Query: 539 EERFAKILRKWARS 552
           E++ A IL++W   
Sbjct: 529 EQQSAAILKQWMYE 542


>gi|167034925|ref|YP_001670156.1| flagellar MS-ring protein [Pseudomonas putida GB-1]
 gi|166861413|gb|ABY99820.1| flagellar M-ring protein FliF [Pseudomonas putida GB-1]
          Length = 592

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 126/591 (21%), Positives = 247/591 (41%), Gaps = 67/591 (11%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           + F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  ++   L
Sbjct: 25  MAFLENISQMPMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLSGMDTKQVMDTL 84

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + A+I + +  N  ++ V +  + +AR+ LAA G+  S  N G+EL DK    G + FM+
Sbjct: 85  AAADIPYNVEPNSGALLVKADDLSRARLKLAAAGVAPSDGNVGFELLDKEQGLGTSQFME 144

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
                R+LEGE+ART+ S++ + AARVH+ +P    F +   +P+ASV++        + 
Sbjct: 145 ATRYRRSLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDERKPSASVLVELYPGRALEA 204

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEM 243
               AI +LVA +VP LD   VTV+D  G LL+    + ++   GK     + ++  +  
Sbjct: 205 GQVMAIVNLVATSVPELDKSQVTVVDQKGNLLSEQIQDSSLTQAGKQFDYSRRVESMLTQ 264

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            ++  L   LG D +++ V A+L+    +     ++PD    RS +   + + S    P+
Sbjct: 265 RVHNILQPVLGNDRYKAEVSADLDFSAVESTSEQFNPDQPALRSEQSVDEQRASSQG-PQ 323

Query: 304 SAVTVEQNMPHVSDRKVPLPRSL----------------------------------ENT 329
                  N P  +                                             + 
Sbjct: 324 GVPGALSNQPPGAASAPQTTGGAATPASAIQPGQPLVDANGQQIMDPATGQPMLAPYPSD 383

Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEI 388
            +++   N+E++     T     ++ RLS+AVVV ++ +L    G +         LA  
Sbjct: 384 KRQQSTKNFELDRSISHTRQQQGRMTRLSVAVVVDDQVKLDPATGDATRAPWAAEDLARF 443

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALV 444
            ++V  A G ++ RGD++T+ ++ F  ++      +    Q  F DI+ +          
Sbjct: 444 TRLVQDAVGFDASRGDSVTVINVPFAADRGEEIADIAFYQQPWFWDIVKQ---------- 493

Query: 445 FLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSS 504
            ++G + +  L    LR + N       +    S +    +      G + ND ++L   
Sbjct: 494 -VLGVVFILVLVFGVLRPVLNNITGGGKQAASDSDMELGGMMG--LDGELANDRVSLGGP 550

Query: 505 NQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
              +  S S   ++++N+         +  ++  +  R A++++ W  ++ 
Sbjct: 551 TSILLPSPSEGYEAQLNA---------IKGLVAEDPGRVAQVVKDWINADE 592


>gi|313497796|gb|ADR59162.1| FliF [Pseudomonas putida BIRD-1]
          Length = 592

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 126/591 (21%), Positives = 248/591 (41%), Gaps = 67/591 (11%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           + F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  ++   L
Sbjct: 25  MAFLENISQMPMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLSGMDTKQVMDTL 84

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + A+I + +  N  ++ V +  + +AR+ LAA G+  S  N G+EL DK    G + FM+
Sbjct: 85  AAADIPYNVEPNSGALLVKADDLSRARLKLAAAGVAPSDGNVGFELLDKEQGLGTSQFME 144

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
                R+LEGE+ART+ S++ + AARVH+ +P    F +   +P+ASV++        + 
Sbjct: 145 TTRYRRSLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDERKPSASVLVELYPGRALEA 204

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEM 243
               AI +LVA +VP LD   VTV+D  G LL+    +  +   GK     + ++  +  
Sbjct: 205 GQVMAIVNLVATSVPELDKSQVTVVDQKGNLLSEQIQDSALTQAGKQFDYSRRVESMLTQ 264

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            ++  L   LG D +++ V A+L+    +     ++PD    RS +   + + S    P+
Sbjct: 265 RVHNILQPVLGNDRYKAEVSADLDFSAVESTSEQFNPDQPALRSEQSVDEQRASSQG-PQ 323

Query: 304 SAVTVEQNMPHVSDRKV----------------------------------PLPRSLENT 329
                  N P  +                                      P+     + 
Sbjct: 324 GVPGALSNQPPGAASAPQTTGGAATPAAAIQPGQPLVDANGQQIMDPATGQPMLAPYPSD 383

Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEI 388
            +++   N+E++     T     ++ RLS+AVVV ++ ++    G +         LA  
Sbjct: 384 KRQQSTKNFELDRSISHTRQQQGRMTRLSVAVVVDDQVKIDPATGDTTRAPWGAEDLARF 443

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALV 444
            ++V  A G ++ RGD++T+ ++ F  ++      +    Q  F DI+ +          
Sbjct: 444 TRLVQDAVGFDASRGDSVTVINVPFAADRGEEIADIAFYQQPWFWDIVKQ---------- 493

Query: 445 FLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSS 504
            ++G + +  L    LR + N       +    S +    +      G + ND ++L   
Sbjct: 494 -VLGVVFILVLVFGVLRPVLNNITGGGKQAAPDSDMELGGMMG--LDGELANDRVSLGGP 550

Query: 505 NQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
              +  S S   ++++N+         +  ++  +  R A++++ W  ++ 
Sbjct: 551 TSILLPSPSEGYEAQLNA---------IKGLVAEDPGRVAQVVKDWINADE 592


>gi|157145268|ref|YP_001452587.1| flagellar MS-ring protein [Citrobacter koseri ATCC BAA-895]
 gi|157082473|gb|ABV12151.1| hypothetical protein CKO_01005 [Citrobacter koseri ATCC BAA-895]
          Length = 558

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 128/572 (22%), Positives = 239/572 (41%), Gaps = 52/572 (9%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L++     +  R  +++  S     + + +A   +  +P Y  L+  L   D   I   L
Sbjct: 14  LEWLNRLRANPRIPLIVAGS---AAVAIIVAMVLWAKAPDYRTLFSNLSDQDGGAIVTQL 70

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           ++ NI +R ++   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +
Sbjct: 71  TQMNIPYRFTEGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSE 128

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
           ++   RALEGE+ARTI+++  +  ARVH+ MP    F +    P+ASV +          
Sbjct: 129 QVNYQRALEGELARTIETLGPVKRARVHLAMPKPSLFVREQKSPSASVTVNLEPGRALDE 188

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-NILGKSLSIVQAIQHEIEMN 244
               A+ HLV++AV  L  G+VT++D  G LLT +     ++    L     ++  I+  
Sbjct: 189 GQISAVVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSSRDLNDAQLKYASDVEGRIQRR 248

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---TSQ 301
           I   L+  +G  N  + V A+L+   ++  E  Y P+    +++  S+    SE   +  
Sbjct: 249 IESILSPIVGNGNVHAQVTAQLDFANKEQTEEQYRPNGDASQAVLRSRQLNESEQIGSGY 308

Query: 302 PESAVTVEQNMPHVSDRKV------------------PLPRSLENTDKKEEQSNYEINTK 343
           P        N P  ++                         ++    ++ E SNYE++  
Sbjct: 309 PGGVPGALSNQPAPANAAPISTPPANQQNAQNTQTTNNTNSNVPRNTQRNETSNYEVDRT 368

Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403
              T  +   ++RLS+AVVVN   L +              + +I  +   A G + +RG
Sbjct: 369 IRHTKLNVGDVQRLSVAVVVNYRALPDGKPL----PLTTEQMKQIEDLTREAMGFSDKRG 424

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
           DT+ + +  F           ++ F    +     +I+A  +L+  L+   L   A+R  
Sbjct: 425 DTLNVVNSPFTATDDLGG---ELPFWKQQA-FIEQLISAGRWLLVLLVAWILWRKAVRPQ 480

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                 +      ++ +                +       ++D  +  R    R+ + V
Sbjct: 481 LARRAEETKAAQEQAQVR------------QETEEAVEVRLSKDEQTQQRRANQRLGAEV 528

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
             Q   R+  M + +    A ++R+W  ++ E
Sbjct: 529 MSQ---RIREMSDNDPRVVALVIRQWMNNDHE 557


>gi|110632647|ref|YP_672855.1| flagellar MS-ring protein [Mesorhizobium sp. BNC1]
 gi|110283631|gb|ABG61690.1| flagellar M-ring protein FliF [Chelativorans sp. BNC1]
          Length = 545

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 226/554 (40%), Positives = 341/554 (61%), Gaps = 13/554 (2%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           + +QL    ++  +LG  R+ ++  V+ + + +      ++N P Y+ LYV LE SDVN+
Sbjct: 1   MPEQLRTIVENLRALGPRRLAMMGGVLALTLAVVTGGAIYLNRPAYETLYVGLERSDVNQ 60

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I + L EA I F +  +G+++ VP+    +AR+ LA +GLP SS+N+GYELFD V S GL
Sbjct: 61  IGLVLGEAGIRFDVVSDGTAVLVPTGKTAEARMLLAEKGLP-SSANAGYELFDTVGSLGL 119

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T+FMQE+TRVRALEGEIARTI+SI+GI AARVHIVMP+ G+FR+ G  P+ASV+IR    
Sbjct: 120 TTFMQEVTRVRALEGEIARTIRSIAGIRAARVHIVMPERGNFRREGQEPSASVVIRTSGI 179

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQAIQHEI 241
                A +IR+LVAAAVP L    VTVLDS+G LL A +    N   +S+ I + ++ ++
Sbjct: 180 DGAAKAASIRYLVAAAVPGLSAEKVTVLDSSGMLLAAGDDPANNTAQRSIGIERTVEAQV 239

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           E NI +ALA +LG DNFR++V AE+N DT+Q+ E+++DPDS+VERS+++ + A  +    
Sbjct: 240 EENIRRALAPYLGPDNFRASVKAEVNTDTRQVEEVIFDPDSRVERSVQIVRTADSATRET 299

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
             +  TV QN+P        LPRS E ++++EE +NYE+NTK IAT+ + Y++ RLSIAV
Sbjct: 300 AATPTTVLQNLPQEEPAPAELPRSSEESERREETTNYELNTKRIATSSNGYQVTRLSIAV 359

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           VVN+GRL  +LG +A    + + + EI  +V++A G+N  RGD + + +++F++      
Sbjct: 360 VVNEGRLAAILGDNAAPDALQTRIREIETVVASAAGLNETRGDVLNVAAVEFVDGLDGVE 419

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
                     L RH  T+INAL F++    +T+ GL  L          +    G+ I  
Sbjct: 420 MAEPGPLA-ALGRHSGTMINALAFVLAAFFITWFGLRPLATALTRGPEIEASAAGEEI-- 476

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
                    +    ++ +AL + N    S   N + ++    + Q+   L  M+++NEER
Sbjct: 477 ------QALSQEGADERLALTAGNGVQSSEEANDEPQLKIKPAPQAL--LARMVDLNEER 528

Query: 542 FAKILRKWARSEIE 555
            A ILRKWAR+E+E
Sbjct: 529 TADILRKWARAEVE 542


>gi|161502909|ref|YP_001570021.1| flagellar MS-ring protein [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160864256|gb|ABX20879.1| hypothetical protein SARI_00968 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 560

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 133/575 (23%), Positives = 242/575 (42%), Gaps = 55/575 (9%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L++     +  R  +++  S     + + +A   +  +P Y  L+  L   D   I   L
Sbjct: 14  LEWLNRLRANPRIPLIVAGS---AAVAIIVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQL 70

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           ++ NI +R ++   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +
Sbjct: 71  TQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSE 128

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
           ++   RALEGE+ARTI+++  + +ARVH+ MP    F +    P+ASV +          
Sbjct: 129 QVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDE 188

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMN 244
               A+ HLV++AV  L  G+VT++D +G LLT +N   R++    L     ++  I+  
Sbjct: 189 GQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRR 248

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET---SQ 301
           I   L+  +G  N  + V A+L+   ++  E  Y P+    ++   S+    SE      
Sbjct: 249 IEAILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQIGAGY 308

Query: 302 PESAVTVEQNMPHVSD-----RKVPLPRSLENT----------------DKKEEQSNYEI 340
           P        N P   +           ++ +NT                 ++ E SNYE+
Sbjct: 309 PGGVPGALSNQPAPPNEAPIATPPGNQQNAQNTAQTSTSTNSNSTGPRNTQRNETSNYEV 368

Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400
           +     T  +   +ERLS+AVVVN   L +              + +I  +   A G + 
Sbjct: 369 DRTIRHTKMNVGDIERLSVAVVVNYKTLADGKPL----PLTADQMKQIEDLTREAMGFSD 424

Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460
           +RGDT+ + +  F      +    ++ F    S     ++ A  +L+  L+   L   A+
Sbjct: 425 KRGDTLNVVNSPF---SAVDETGGELPFWQQQS-FIDQLLAAGRWLLVLLVAWILWRKAV 480

Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520
           R        +      ++ +                +       ++D     R    R+ 
Sbjct: 481 RPQLTRRVEETKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQRLG 528

Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 529 AEVMSQ---RIREMSDNDPRVVALVIRQWMSNDHE 560


>gi|104782821|ref|YP_609319.1| flagellar MS-ring protein [Pseudomonas entomophila L48]
 gi|95111808|emb|CAK16532.1| flagellar basal-body M-ring protein FliF [Pseudomonas entomophila
           L48]
          Length = 592

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 127/591 (21%), Positives = 248/591 (41%), Gaps = 67/591 (11%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           + F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  ++   L
Sbjct: 25  MAFLENISQMPMLRQVGLLVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDTKQVMDTL 84

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + A+I + +  N  ++ V +  + +AR+ LAA G+  S  N G+EL DK    G + FM+
Sbjct: 85  ASADIPYHVEPNSGALLVKADDLSRARLKLAAAGVAPSDGNVGFELLDKEQGLGTSQFME 144

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
                R+LEGE+ART+ S++ + AARVH+ +P    F +   +P+ASV++        + 
Sbjct: 145 TTRYRRSLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDERKPSASVLVELYPGRALEA 204

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP LD   VTV+D  G LL+    +   ++ GK     + ++  +  
Sbjct: 205 GQVMAIVNLVATSVPELDKSQVTVVDQKGNLLSDQLQDTALSMAGKQFDYSRRMEGLLTQ 264

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            ++  L   LG D +++ V A+++    +     ++PD    RS +   + + S    P+
Sbjct: 265 RVHNILQPVLGNDRYKAEVSADVDFSAVESTSEQFNPDQPALRSEQSVNEQRASSQG-PQ 323

Query: 304 SAVTVEQNMPHVSDRKV----------------------------------PLPRSLENT 329
                  N P                                         P+     + 
Sbjct: 324 GVPGALSNQPPAGASAPENARAAATPAGAIQPGQPLVDANGQQIMDPATGQPMLAPYPSD 383

Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN-KGRLTEVLGRSADQGKIDSYLAEI 388
            +++   N+E++     T     +L RLS+AVVV+ + +L    G +         LA  
Sbjct: 384 KRQQSTKNFELDRSISHTRQQQGRLTRLSVAVVVDDQVKLDAASGEATRTPWGAEDLARF 443

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALV 444
            ++V  A G ++ RGD++T+ ++ F  ++      +    Q  F DI+ +          
Sbjct: 444 TRLVQDAVGFDASRGDSVTVINVPFAADRGDELVDIPFYSQPWFWDIVKQ---------- 493

Query: 445 FLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSS 504
            ++G L +  L    LR +         +    S +    +      G + ND ++L   
Sbjct: 494 -VLGVLFILVLVFGVLRPVLTNITGGGKQAATDSDMELGGMIG--LDGELANDRVSLGGP 550

Query: 505 NQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
              +  S S   ++++N+         +  ++  +  R A+++++W  ++ 
Sbjct: 551 TSILLPSPSEGYEAQLNA---------IKGLVAEDPGRVAQVVKEWINADE 592


>gi|289627784|ref|ZP_06460738.1| flagellar MS-ring protein [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289651625|ref|ZP_06482968.1| flagellar MS-ring protein [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|298487835|ref|ZP_07005875.1| Flagellar M-ring protein fliF [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157560|gb|EFH98640.1| Flagellar M-ring protein fliF [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330866444|gb|EGH01153.1| flagellar MS-ring protein [Pseudomonas syringae pv. aesculi str.
           0893_23]
 gi|330986489|gb|EGH84592.1| flagellar MS-ring protein [Pseudomonas syringae pv. lachrymans str.
           M301315]
 gi|331011063|gb|EGH91119.1| flagellar MS-ring protein [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 594

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 135/592 (22%), Positives = 244/592 (41%), Gaps = 66/592 (11%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L
Sbjct: 24  LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + ANI++ +  N  ++ V S  V +ARI LA  G+  + +N G+E+ DK    G + FM+
Sbjct: 84  TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
                R LEGE+ARTI +++ +  ARVH+ +P    F +   +P+ASV++        + 
Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP L    +TV+D  G LL+  A   E  + GK     + ++  +  
Sbjct: 204 SQVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE----- 298
            +   L   LG D +++ V A ++    +     ++PD    RS +   + + S      
Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNEQRSSSSSTGG 323

Query: 299 -----TSQPESAVTVEQNM----------------------PHVSDRKVPLPRSLENTDK 331
                ++QP    T  QN                         + D     P        
Sbjct: 324 VPGALSNQPPGPATAPQNATAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPAD 383

Query: 332 K--EEQSNYEINTKSIATTHDNYKLERLSIAVVVNK-GRLTEVLGRSADQGKIDSYLAEI 388
           K  +   N+E++     T     +L RLS+AVVV+   +     G         + LA  
Sbjct: 384 KRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAADLARF 443

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALV 444
            ++V  A G ++ RGD++++ ++ F   +           Q  F DI+ +          
Sbjct: 444 TRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYSQPWFWDIVKQ---------- 493

Query: 445 FLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDS 503
             VG + +  L    LR  L NI   K  E+ G    +       +  G + ND ++L  
Sbjct: 494 -AVGVIFILILVFGVLRPVLTNITTGKSKELAGFGGDAELGGMGGL-DGELSNDRVSLGG 551

Query: 504 SNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
               +  S +    +++N+         +  ++  +  R A+++++W  ++ 
Sbjct: 552 PQSILLPSPTEGYDAQLNA---------IKSLVAEDPGRVAQVVKEWINTDE 594


>gi|322616962|gb|EFY13870.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322618201|gb|EFY15093.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625872|gb|EFY22691.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322626324|gb|EFY23134.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322632739|gb|EFY29484.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322639081|gb|EFY35774.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322640397|gb|EFY37053.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322647242|gb|EFY43741.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322649910|gb|EFY46331.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322660296|gb|EFY56534.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322662977|gb|EFY59184.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322668162|gb|EFY64321.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322674079|gb|EFY70173.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322675569|gb|EFY71643.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322686714|gb|EFY82692.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323195398|gb|EFZ80578.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323198074|gb|EFZ83191.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323207544|gb|EFZ92492.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323211017|gb|EFZ95877.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323217529|gb|EGA02248.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323219604|gb|EGA04088.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323231551|gb|EGA15664.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235994|gb|EGA20073.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323240564|gb|EGA24607.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323245456|gb|EGA29456.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323250226|gb|EGA34118.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323253963|gb|EGA37787.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323255510|gb|EGA39271.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323262107|gb|EGA45670.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323266230|gb|EGA49720.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323270661|gb|EGA54102.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 560

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 132/575 (22%), Positives = 243/575 (42%), Gaps = 55/575 (9%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L++     +  R  +++  S     + + +A   +  +P Y  L+  L   D   I   L
Sbjct: 14  LEWLNRLRANPRIPLIVAGS---ATVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQL 70

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           ++ NI +R ++   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +
Sbjct: 71  TQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSE 128

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
           ++   RALEGE+ARTI+++  + +ARVH+ MP    F +    P+ASV +          
Sbjct: 129 QVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDE 188

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMN 244
               A+ HLV++AV  L  G+VT++D +G LLT +N   R++    L     ++  I+  
Sbjct: 189 GQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRR 248

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET---SQ 301
           I   L+  +G  N  + V A+L+   ++  E  Y P+    ++   S+    SE      
Sbjct: 249 IEAILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGY 308

Query: 302 PESAVTVEQNMP--------------HVSDRKVPLPRSLENTDK-------KEEQSNYEI 340
           P        N P                + +  P   +  N++        + E SNYE+
Sbjct: 309 PGGVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRNTQRNETSNYEV 368

Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400
           +     T  +   +ERLS+AVVVN   L +              + +I  +   A G + 
Sbjct: 369 DRTIRHTKMNVGDIERLSVAVVVNYKTLADGKPL----PLTADQMKQIEDLTREAMGFSD 424

Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460
           +RGDT+ + +  F      ++   ++ F    S     ++ A  +L+  ++   L   A+
Sbjct: 425 KRGDTLNVVNSPF---SAVDNTGGELPFWQQQS-FIDQLLAAGRWLLVLVVAWILWRKAV 480

Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520
           R        +      ++ +                +       ++D     R    R+ 
Sbjct: 481 RPQLTRRVEETKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQRLG 528

Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 529 AEVMSQ---RIREMSDNDPRVVALVIRQWMSNDHE 560


>gi|295678025|ref|YP_003606549.1| flagellar M-ring protein FliF [Burkholderia sp. CCGE1002]
 gi|295437868|gb|ADG17038.1| flagellar M-ring protein FliF [Burkholderia sp. CCGE1002]
          Length = 598

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 136/527 (25%), Positives = 231/527 (43%), Gaps = 26/527 (4%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
             +  +P Y  LY  L   D   I  AL +ANI +++S++G+++ VP+  V + R+ LA+
Sbjct: 84  FLWSRAPSYKVLYSNLSDRDGGSIITALQQANIPYKLSESGTAVLVPAEQVHETRLRLAS 143

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
           QGLP S S  G+EL D    FG++ F +++   RALEGE+ RTI SIS + +ARVH+ +P
Sbjct: 144 QGLPKSGS-VGFELMD-NQKFGISQFDEQVNYQRALEGELERTIGSISSVKSARVHLAIP 201

Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
               F +    P+ASV++      V       AI H+VA+AVP + +  VT+LD  G LL
Sbjct: 202 KPSVFVRDKEPPSASVLVNLYPGRVLDEGQVVAITHMVASAVPQMPVRGVTILDQDGNLL 261

Query: 218 TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
           T       +    L   Q I+   +  I+  LA   G  N RS V A+++    +     
Sbjct: 262 TQPTNGSGLDATQLKFRQQIERNTQQRIDTILAPLFGAGNARSQVSADIDFSHSEQTSEK 321

Query: 278 YDPDS----KVERSIRLSKDAQRSETSQPESAVTVEQNMPH-------VSDRKVPLPRSL 326
           Y P++       RS + S   + S+            N P        V+        + 
Sbjct: 322 YGPNANPQDAAIRSQQTSSATEMSQGG-ASGVPGALSNQPPQPASAPIVAGNGASSVSTT 380

Query: 327 ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLA 386
             +D K+  +NYE++            + RL++AVVVN  R+ +  G    Q      LA
Sbjct: 381 PISDHKDSTTNYELDKTVRHIDQPMGGIRRLTVAVVVNYMRVVDPKGHVTMQPVSADKLA 440

Query: 387 EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFL 446
           +I ++V  A G ++ RGD++ + +  F  +   N+        D+L+ +        +  
Sbjct: 441 QITQLVKDAMGYDASRGDSVNVVNSAFTTDLDPNADLPWWRTPDMLALYKQIATYLGIGA 500

Query: 447 VGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQ 506
           V   L   +   ALRR           +         P    +  G+  ++    D +  
Sbjct: 501 VALFLYFVMVKPALRRAFPPPPEPVPAL-------MSPDEPVLLDGIPADER---DGAVV 550

Query: 507 DIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
           +I + S  L      +  +++     ++   + +  A +++ W   E
Sbjct: 551 EIEADSEKLALENAKHKYERNLEFARNIARQDPKIVATVVKNWVSDE 597


>gi|71734724|ref|YP_275541.1| flagellar MS-ring protein [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|71555277|gb|AAZ34488.1| flagellar M-ring protein FliF [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 594

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 135/592 (22%), Positives = 244/592 (41%), Gaps = 66/592 (11%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L
Sbjct: 24  LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + ANI++ +  N  ++ V S  V +ARI LA  G+  + +N G+E+ DK    G + FM+
Sbjct: 84  TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
                R LEGE+ARTI +++ +  ARVH+ +P    F +   +P+ASV++        + 
Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP L    +TV+D  G LL+  A   E  + GK     + ++  +  
Sbjct: 204 SQVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE----- 298
            +   L   LG D +++ V A ++    +     ++PD    RS +   + + S      
Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNEQRSSSSSTGG 323

Query: 299 -----TSQPESAVTVEQNM----------------------PHVSDRKVPLPRSLENTDK 331
                ++QP    T  QN                         + D     P        
Sbjct: 324 VPGALSNQPPGPATAPQNATAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPAD 383

Query: 332 K--EEQSNYEINTKSIATTHDNYKLERLSIAVVVNK-GRLTEVLGRSADQGKIDSYLAEI 388
           K  +   N+E++     T     +L RLS+AVVV+   +     G         + LA  
Sbjct: 384 KRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAADLARF 443

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALV 444
            ++V  A G ++ RGD++++ ++ F   +           Q  F DI+ +          
Sbjct: 444 TRLVQDAVGFDASRGDSVSVINVPFSIERAEVLPEASFYSQPWFWDIVKQ---------- 493

Query: 445 FLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDS 503
             VG + +  L    LR  L NI   K  E+ G    +       +  G + ND ++L  
Sbjct: 494 -AVGVIFILILVFGVLRPVLTNITTGKSKELAGFGGDAELGGMGGL-DGELSNDRVSLGG 551

Query: 504 SNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
               +  S +    +++N+         +  ++  +  R A+++++W  ++ 
Sbjct: 552 PQSILLPSPTEGYDAQLNA---------IKSLVAEDPGRVAQVVKEWINTDE 594


>gi|320325114|gb|EFW81183.1| flagellar MS-ring protein [Pseudomonas syringae pv. glycinea str.
           B076]
          Length = 594

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 135/592 (22%), Positives = 244/592 (41%), Gaps = 66/592 (11%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L
Sbjct: 24  LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + ANI++ +  N  ++ V S  V +ARI LA  G+  + +N G+E+ DK    G + FM+
Sbjct: 84  TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
                R LEGE+ARTI +++ +  ARVH+ +P    F +   +P+ASV++        + 
Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP L    +TV+D  G LL+  A   E  + GK     + ++  +  
Sbjct: 204 SQVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE----- 298
            +   L   LG D +++ V A ++    +     ++PD    RS +   + + S      
Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNEQRSSSSGTGG 323

Query: 299 -----TSQPESAVTVEQNM----------------------PHVSDRKVPLPRSLENTDK 331
                ++QP    T  QN                         + D     P        
Sbjct: 324 VPGALSNQPPGPATAPQNATAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPAD 383

Query: 332 K--EEQSNYEINTKSIATTHDNYKLERLSIAVVVNK-GRLTEVLGRSADQGKIDSYLAEI 388
           K  +   N+E++     T     +L RLS+AVVV+   +     G         + LA  
Sbjct: 384 KRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAADLARF 443

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALV 444
            ++V  A G ++ RGD++++ ++ F   +           Q  F DI+ +          
Sbjct: 444 TRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYSQPWFWDIVKQ---------- 493

Query: 445 FLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDS 503
             VG + +  L    LR  L NI   K  E+ G    +       +  G + ND ++L  
Sbjct: 494 -AVGVIFILILVFGVLRPVLTNITTGKSKELAGFGGDAELGRMGGL-DGELSNDRVSLGG 551

Query: 504 SNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
               +  S +    +++N+         +  ++  +  R A+++++W  ++ 
Sbjct: 552 PQSILLPSPTEGYDAQLNA---------IKSLVAEDPGRVAQVVKEWINTDE 594


>gi|259908758|ref|YP_002649114.1| flagellar MS-ring protein [Erwinia pyrifoliae Ep1/96]
 gi|224964380|emb|CAX55889.1| Flagellar basal-body M-ring protein [Erwinia pyrifoliae Ep1/96]
 gi|283478734|emb|CAY74650.1| Flagellar M-ring protein FliF [Erwinia pyrifoliae DSM 12163]
          Length = 569

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 131/546 (23%), Positives = 235/546 (43%), Gaps = 54/546 (9%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  L+  L   D   I   L++ N+ ++  D G ++ VP++ V + R+ LA+Q
Sbjct: 46  LWAKQPDYRVLFSNLSNEDGGTIVTQLTQMNVPYKFDDQGGALLVPAAQVHELRLRLASQ 105

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL DK   FG++ F +++   RALEGE+ARTI ++  +  ARVH+ MP 
Sbjct: 106 GLPKGGA-VGFELLDKE-KFGISQFSEQVNYQRALEGELARTISTLGPVKDARVHLAMPK 163

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +              A+ H+V+++V  +  G+VTV+D  G+LLT
Sbjct: 164 PTLFVREQKSPSASVTLALQPGRALDEGQINAVVHMVSSSVAGMPPGNVTVVDQAGRLLT 223

Query: 219 ANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            N+   R++    L     ++   +  I   L   LG  N  + V A+++ + ++  +  
Sbjct: 224 QNDPGGRDLNDTQLKYANDVETRYQQRIEAILGPILGNGNVHAQVTAQIDFNKREKTDEQ 283

Query: 278 YDPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDRKVPLP----------- 323
           Y P+S+ ++    S+    SE    S          N P  ++     P           
Sbjct: 284 YSPNSQPDQQAIRSRQTSNSEQLGGSSAGGVPGALSNQPAPANAAPVTPANNNANNANAN 343

Query: 324 ---------------RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368
                          +++ +  + +  +NYE+N   + T  +  +++RLS+AVVVN    
Sbjct: 344 ANNGQPANNAANAAQKTVPSNTRSDNTTNYEVNRTILHTKMNVGEVQRLSVAVVVNY--- 400

Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSF 428
                        D+ + +I  +   A G + +RGD++ + +  F +N    +       
Sbjct: 401 -RADAAGKPIALKDAQIKQIENLTREAMGFSEQRGDSLNVVNSQFTDNSDLAAELPFWKQ 459

Query: 429 MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSA 488
              + + F      LV +V  +L   L    LRR      A +      +  S      A
Sbjct: 460 PAFIDQLFNAGRWLLVLIVAFILYRKLVSPQLRRKAEQQKATEEAAINAARSSTRDEGVA 519

Query: 489 VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRK 548
           V             S ++D  +  R  Q R+++ V  Q   R+  M E +    A ++R+
Sbjct: 520 V-------------SLSKDELNQERKSQHRMSAEVLSQ---RIREMSENDPRVVALVIRQ 563

Query: 549 WARSEI 554
           W + E+
Sbjct: 564 WMKDEL 569


>gi|148546737|ref|YP_001266839.1| flagellar MS-ring protein [Pseudomonas putida F1]
 gi|148510795|gb|ABQ77655.1| flagellar M-ring protein FliF [Pseudomonas putida F1]
          Length = 592

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 126/591 (21%), Positives = 248/591 (41%), Gaps = 67/591 (11%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           + F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  ++   L
Sbjct: 25  MAFLENISQMPMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLSGMDTKQVMDTL 84

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + A+I + +  N  ++ V +  + +AR+ LAA G+  S  N G+EL DK    G + FM+
Sbjct: 85  AAADIPYNVEPNSGALLVKADDLSRARLKLAAAGVAPSDGNVGFELLDKEQGLGTSQFME 144

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
                R+LEGE+ART+ S++ + AARVH+ +P    F +   +P+ASV++        + 
Sbjct: 145 ATRYRRSLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDERKPSASVLVELYPGRALEA 204

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEM 243
               AI +LVA +VP LD   VTV+D  G LL+    +  +   GK     + ++  +  
Sbjct: 205 GQVMAIVNLVATSVPELDKSQVTVVDQKGNLLSEQIQDSALTQAGKQFDYSRRVESMLTQ 264

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            ++  L   LG D +++ V A+L+    +     ++PD    RS +   + + S    P+
Sbjct: 265 RVHNILLPVLGNDRYKAEVSADLDFSAVESTSEQFNPDQPALRSEQSVDEQRASSQG-PQ 323

Query: 304 SAVTVEQNMPHVSDRKV----------------------------------PLPRSLENT 329
                  N P  +                                      P+     + 
Sbjct: 324 GVPGALSNQPPGAASAPQTTGGAATPAAAIQPGQPLVDANGQQIMDPATGQPMLAPYPSD 383

Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEI 388
            +++   N+E++     T     ++ RLS+AVVV ++ ++    G +         LA  
Sbjct: 384 KRQQSTKNFELDRSISHTRQQQGRMTRLSVAVVVDDQVKIDPATGDTTRAPWGAEDLARF 443

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALV 444
            ++V  A G ++ RGD++T+ ++ F  ++      +    Q  F DI+ +          
Sbjct: 444 TRLVQDAVGFDASRGDSVTVINVPFAADRGEEIADIAFYQQPWFWDIVKQ---------- 493

Query: 445 FLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSS 504
            ++G + +  L    LR + N       +    S +    +      G + ND ++L   
Sbjct: 494 -VLGVVFILVLVFGVLRPVLNNITGGGKQAAPDSDMELGGMMG--LDGELANDRVSLGGP 550

Query: 505 NQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
              +  S S   ++++N+         +  ++  +  R A++++ W  ++ 
Sbjct: 551 TSILLPSPSEGYEAQLNA---------IKGLVAEDPGRVAQVVKDWINADE 592


>gi|89094455|ref|ZP_01167395.1| flagellar M-ring protein [Oceanospirillum sp. MED92]
 gi|89081347|gb|EAR60579.1| flagellar M-ring protein [Oceanospirillum sp. MED92]
          Length = 554

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 123/555 (22%), Positives = 240/555 (43%), Gaps = 28/555 (5%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
               L   R + L   +   + +  A   +   P    L+  L  SD N+I   L   N+
Sbjct: 15  GFNKLSIVRQIGLMVGLAASVAIGFAVVLWSQKPEQRVLFSNLTFSDANQIIEQLRLYNV 74

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
            +    +G +I VP   V +AR+ LAA+G  +S    G+E+ D+  S G + FM+     
Sbjct: 75  PYTFDADGRAILVPDEHVHQARLKLAAEGF-TSDKTVGFEILDREQSLGTSQFMETTKYR 133

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAEA 190
           R LEGE+ARTI S++ +  ARVH+ +P    F +   +PTASV +   +    +     +
Sbjct: 134 RGLEGELARTISSMTSVRNARVHLAIPKDTVFIRDTRKPTASVFLELFSGRKLERDQVAS 193

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEMNINKA 248
           I +LVA+++P LD+ DVTV+D  G+LL   + + +  +  K L   ++I+  +   +N  
Sbjct: 194 IANLVASSIPALDVKDVTVVDQRGRLLNMRDKDVDVVLAAKQLEYTRSIEDTLLNRVNSI 253

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308
           L   +G+  FR+ V A+++  + +  + +Y+PD    RS +   +++      P      
Sbjct: 254 LQPVVGMGRFRAEVSADVDFTSVEQTDELYNPDLPALRSEQTMDESRVG-NGAPVGIPGA 312

Query: 309 EQNMPH--------VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
             N P          S   V        + +K+   N+E++     T H   ++ RL++A
Sbjct: 313 LSNQPPGQSSVPEQASGEGVIAGNGQPGSSRKQATRNFELDRTISYTKHQQGRVRRLTVA 372

Query: 361 VVVNK-GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           VVV+    +    G ++      + L  +  +V  A G ++ RGD++ + +  F   +  
Sbjct: 373 VVVDDLASVNAETGETSRTPWDQNELERLRILVQDAVGFSTLRGDSVNVVNTPFAAEEPI 432

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
            +  + +   + +      V+ A    +  L++ F  L  + R            G  + 
Sbjct: 433 VTEEIPLWKQEWVMDVMKQVMAA----IFVLVLVFGILRPILRNLAAAGTAGNVAGLGAA 488

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
                    +  G    D++   S +  + + + +   ++N+         +  M+  + 
Sbjct: 489 GEVSAELEGLEGGDFSADSVTFGSDDGLLPTPNESFDYQLNA---------IRSMVAEDP 539

Query: 540 ERFAKILRKWARSEI 554
            R A+ +++W   + 
Sbjct: 540 ARVAQAVKQWVGDDE 554


>gi|16760913|ref|NP_456530.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|25304719|pir||AB0752 flagellar basal-body M-ring protein [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503210|emb|CAD05717.1| flagellar basal-body M-ring protein [Salmonella enterica subsp.
           enterica serovar Typhi]
          Length = 560

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 134/575 (23%), Positives = 246/575 (42%), Gaps = 55/575 (9%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L++     +  R  +++  S     + + +A   +  +P Y  L+  L   D   I   L
Sbjct: 14  LEWLNRLRANPRIPLIVAGST---AVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQL 70

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           ++ NI +R ++   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +
Sbjct: 71  TQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSE 128

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
           ++   RALEGE+ARTI+++  + +ARVH+ MP    F +    P+ASV +          
Sbjct: 129 QVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDE 188

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMN 244
               A+ HLV++AV  L  G+VT++D +G LLT +N   R++    L     ++  I+  
Sbjct: 189 GQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRR 248

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET---SQ 301
           I   L+  +G  N  + V A+L+   ++  E  Y P+    ++   S+    SE      
Sbjct: 249 IEAILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGY 308

Query: 302 PESAVTVEQNMP--------------HVSDRKVPLPRSLENTDK-------KEEQSNYEI 340
           P        N P                + +  P   +  N++        + E SNYE+
Sbjct: 309 PGGVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNNAGPRNTQRNETSNYEV 368

Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400
           +     T  +   +ERLS+AVVVN   L +              + +I  +   A G + 
Sbjct: 369 DRTIRHTKMNVGDIERLSVAVVVNYKTLADGKPL----PLTADQMKQIEDLTREAMGFSD 424

Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460
           +RGDT+ + +  F      ++   ++ F    S     ++ A  +L+  ++   L   A+
Sbjct: 425 KRGDTLNVVNSPF---SAVDNTGGELPFWQQQS-FIDQLLAAGRWLLVLVVAWILWRKAV 480

Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520
                    ++ +   +          AV   L  ++ +    +NQ           R+ 
Sbjct: 481 HPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQ-----------RLG 528

Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 529 AEVMSQ---RIREMSDNDPRVVALVIRQWMSNDHE 560


>gi|320329373|gb|EFW85366.1| flagellar MS-ring protein [Pseudomonas syringae pv. glycinea str.
           race 4]
 gi|330880568|gb|EGH14717.1| flagellar MS-ring protein [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 594

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 135/592 (22%), Positives = 244/592 (41%), Gaps = 66/592 (11%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L
Sbjct: 24  LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + ANI++ +  N  ++ V S  V +ARI LA  G+  + +N G+E+ DK    G + FM+
Sbjct: 84  TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
                R LEGE+ARTI +++ +  ARVH+ +P    F +   +P+ASV++        + 
Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP L    +TV+D  G LL+  A   E  + GK     + ++  +  
Sbjct: 204 SQVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE----- 298
            +   L   LG D +++ V A ++    +     ++PD    RS +   + + S      
Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNEQRSSSSSTGG 323

Query: 299 -----TSQPESAVTVEQNM----------------------PHVSDRKVPLPRSLENTDK 331
                ++QP    T  QN                         + D     P        
Sbjct: 324 VPGALSNQPPGPATAPQNATAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPAD 383

Query: 332 K--EEQSNYEINTKSIATTHDNYKLERLSIAVVVNK-GRLTEVLGRSADQGKIDSYLAEI 388
           K  +   N+E++     T     +L RLS+AVVV+   +     G         + LA  
Sbjct: 384 KRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAADLARF 443

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALV 444
            ++V  A G ++ RGD++++ ++ F   +           Q  F DI+ +          
Sbjct: 444 TRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYSQPWFWDIVKQ---------- 493

Query: 445 FLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDS 503
             VG + +  L    LR  L NI   K  E+ G    +       +  G + ND ++L  
Sbjct: 494 -AVGVIFILILVFGVLRPVLTNITTGKSKELAGFGGDAELGRMGGL-DGELSNDRVSLGG 551

Query: 504 SNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
               +  S +    +++N+         +  ++  +  R A+++++W  ++ 
Sbjct: 552 PQSILLPSPTEGYDAQLNA---------IKSLVAEDPGRVAQVVKEWINTDE 594


>gi|217976233|ref|YP_002360380.1| flagellar MS-ring protein [Methylocella silvestris BL2]
 gi|217501609|gb|ACK49018.1| flagellar M-ring protein FliF [Methylocella silvestris BL2]
          Length = 546

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 196/553 (35%), Positives = 312/553 (56%), Gaps = 12/553 (2%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M    QL Q + +   LG  R++ LA + +    +   A +F++ P  + LY  L+  DV
Sbjct: 1   MIGQKQLEQIWANLLKLGSRRLIALAMIGVSIFAMTGLAGYFLSRPALETLYAGLDRQDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           +RI  AL EA+I F ++  G++I V      +AR+ LA +GLP +S N+G ELFDK+ S 
Sbjct: 61  SRIGAALKEADIAFDVNAEGNTILVRYGETARARMLLAEKGLP-NSPNAGNELFDKLGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLT+FMQE+TRVRALEGE+ARTIQ + G+ AARVH+VMPD GSFR+    P+ASV+IR  
Sbjct: 120 GLTTFMQEVTRVRALEGELARTIQLMRGVKAARVHVVMPDEGSFRRTREPPSASVVIRTE 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239
                 +A++IRHLVA+AVP + M +VTVL++ G LL + N++  +  G  L++ + +  
Sbjct: 180 MADDVGAAKSIRHLVASAVPGMTMEEVTVLNTEGVLLASGNDLADSAPGGMLTLERTVSQ 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           EI  NI K L  +LG+ NF+ +V   LN D +Q  E +Y+PDS+VERS+++++  Q S+ 
Sbjct: 240 EILDNIRKTLTPYLGLRNFQVSVATRLNTDKKQTNETIYNPDSRVERSVKVTRQNQLSQN 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           S  +S  TVE+N+P  + +     +S E + K EE +NYE+++K+IATT   + ++ +S+
Sbjct: 300 STAQSPTTVERNLPQENVKADDGKQSNEESKKSEELTNYEVSSKTIATTSGGFAIDNISV 359

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AV++N+  L   LG       +   L E+ +++++A G    RGD I I+++DF++    
Sbjct: 360 AVLINRASLMASLGDRPAPEALGKQLGELEQLIASAAGARKERGDAIKISAVDFIDAGRD 419

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
                     ++L R    V+NA+  LV TLL+ + GL                    + 
Sbjct: 420 LEPQPPPPVSELLMRQSGNVLNAVTILVVTLLLIWFGL-------RPAARAILAAPAPAA 472

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
           +    + +    G   + N+ +            NL   + S   +    RL  ++E +E
Sbjct: 473 VEVAELETLSGEGAAGDANMEIGGWGP---QGEVNLIEDLTSAPRRSPQKRLEQIVEFDE 529

Query: 540 ERFAKILRKWARS 552
           E+ A IL++W   
Sbjct: 530 EQAAAILKQWMSQ 542


>gi|896313|gb|AAB06801.1| flagellar MS ring [Pseudomonas aeruginosa]
          Length = 599

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 125/594 (21%), Positives = 248/594 (41%), Gaps = 68/594 (11%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F  + + +   R + L   +   + +  A   +   P Y  LY  L   D NR+  AL
Sbjct: 27  LSFLDNLSEMTMLRQIGLLVGLAASVAIGFAVVLWSQQPDYKPLYGSLNGVDANRVVEAL 86

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + A+I +++  N  ++ V +  +G+AR+ +A+ G+  + +N G+E+ DK  + G + FM+
Sbjct: 87  TAADIPYKVEPNSGALLVKADDLGRARMKVASAGVAPTDNNVGFEILDKEQALGTSQFME 146

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
                R LEGE+ART+ S++ + AARVH+ +P    F +   +P+ASV++        + 
Sbjct: 147 ATNYRRGLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDDRKPSASVLVELYPGRSLEP 206

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP LD   VTV+D  G LL+  +   E  +  K     + ++  +  
Sbjct: 207 SQVMAIVNLVATSVPELDKSQVTVVDQKGNLLSDQQELSELTMADKQFDFTRRMEGLLTQ 266

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            ++  L   L     ++ V A+++    +    +Y+PD    RS + + +  R  +S P+
Sbjct: 267 RVHNILQPVLDNGRNKTEVSADVDFSAVESTSEMYNPDQPALRSEQHNNEE-RQNSSGPQ 325

Query: 304 SAVTVEQNMPHVSDRKVPLPRSL---------------------------------ENTD 330
                  N P           +                                      
Sbjct: 326 GVPGALSNQPPGPASAPQQATASAPADYVAPGQPLKDANGQTIIDPKTGKPELAPYPTDK 385

Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEIN 389
           + +   NYE++     T     +L RLS+AVV++     +   G  + Q      LA   
Sbjct: 386 RDQTTRNYELDRSISYTKQQQGRLRRLSVAVVLDDQMKVDAKTGEVSHQPWSADELARFT 445

Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALVF 445
           ++V  + G ++ RGD++++ +  F   Q     ++    Q  F DI+ +           
Sbjct: 446 RLVQDSVGYDASRGDSVSVINAPFAPAQAEEIDSIPFYSQPWFWDIVKQ----------- 494

Query: 446 LVGTLLVTFLGLHALRR----LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501
           ++G L +  L    LR     +      K    GG        +  +   G + +D +++
Sbjct: 495 VLGVLFILVLMFGVLRPVLSNITGGGKGKSLAGGGGGRDGDLALGESGLEGSLADDRVSI 554

Query: 502 DSSNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
              +  +  S +    +++N+         + +++  +  R A+++++W  ++ 
Sbjct: 555 GGPSSILLPSPTEGYDAQLNA---------IKNLVAQDPGRVAQVVKEWINADE 599


>gi|161526230|ref|YP_001581242.1| flagellar MS-ring protein [Burkholderia multivorans ATCC 17616]
 gi|189349056|ref|YP_001944684.1| flagellar MS-ring protein [Burkholderia multivorans ATCC 17616]
 gi|160343659|gb|ABX16745.1| flagellar M-ring protein FliF [Burkholderia multivorans ATCC 17616]
 gi|189333078|dbj|BAG42148.1| flagellar M-ring protein [Burkholderia multivorans ATCC 17616]
          Length = 587

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 124/525 (23%), Positives = 220/525 (41%), Gaps = 29/525 (5%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA 
Sbjct: 79  LWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPAAQVHETRLKLAAL 138

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D    FG++ F +++   RALEGE+ RTI+SI+ +  ARVH+ +P 
Sbjct: 139 GLPKGGA-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLAIPK 196

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +      V      +AI  +V++ VP++   +VT++D  G LLT
Sbjct: 197 PSVFVRDREAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGNLLT 256

Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
                  +    L  VQ ++   +  I+  LA   G  N RS V A+++    +     Y
Sbjct: 257 QPASATGLDASQLKYVQQVERNTQKRIDAILAPIFGAGNARSQVSADIDFSKLEQTSESY 316

Query: 279 DPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH-------VSDRKVPLPRSLEN 328
            P+   +++   S+    S     S          N P        V+      P++   
Sbjct: 317 GPNGSPQQAAIRSQQTSTSTELAQSGASGVPGALSNTPPQPASAPIVAGNGANAPQTTPV 376

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           +D+K++ +NYE++            ++RLS+AVVVN   + +  G    Q    + LA+I
Sbjct: 377 SDRKDQTTNYELDKTIRHVEQPMGTVKRLSVAVVVNYQPVADAKGHVTMQPLPPAKLAQI 436

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G +++RGD++ + +  F      N+        D+++          +    
Sbjct: 437 EQLVKDAMGYDAKRGDSVNVMNSAFSTATDPNADLPWWRQPDMIALAKEAAKWLGIAAAA 496

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
             L       A+RR     +     +                   +  D +       + 
Sbjct: 497 AALYFMFVRPAMRRAFPPPEPAAPALALPGEP-------------VVLDGLPAPEPEDES 543

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                  ++  N Y       R   +   + +  A +++ W   E
Sbjct: 544 DPALLAFENEKNRYERNLDYAR--TIARQDPKIVATVVKNWVSDE 586


>gi|254251157|ref|ZP_04944475.1| Flagellar biosynthesis/type III secretory pathway lipoprotein
           [Burkholderia dolosa AUO158]
 gi|124893766|gb|EAY67646.1| Flagellar biosynthesis/type III secretory pathway lipoprotein
           [Burkholderia dolosa AUO158]
          Length = 588

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 129/528 (24%), Positives = 220/528 (41%), Gaps = 28/528 (5%)

Query: 38  AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97
           A   +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VPSS V + R+ L
Sbjct: 76  ALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSSQVHETRLKL 135

Query: 98  AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
           AA GLP   S  G+EL D    FG++ F ++I   RALEGE+ RTI+SI+ +  ARVH+ 
Sbjct: 136 AAMGLPKGGS-VGFELMD-NQKFGISQFAEQINYQRALEGELQRTIESINAVRGARVHLA 193

Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
           +P    F +    P+ASV +      V      +AI  +V++ VP++   +VT++D  G 
Sbjct: 194 IPKPSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGN 253

Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LLT       +    L  VQ ++   +  I+  LA   G  N RS V A+++    +   
Sbjct: 254 LLTQTASATGLDASQLKYVQQVERNTQKRIDAILAPIFGAGNARSQVSADIDFSKLEQTS 313

Query: 276 IVYDPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH-------VSDRKVPLPRS 325
             Y P+   +++   S+    S     S          N P        V+      P++
Sbjct: 314 ESYAPNGTPQQAAIRSQQTSTSTELAQSGASGVPGALSNTPPQPASAPIVAGNGQNGPQT 373

Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385
              +D+K++ +NYE++            ++RLS+AVVVN   + +  G    Q    + L
Sbjct: 374 TPVSDRKDQTTNYELDKTIRHVEQPMGSVKRLSVAVVVNYQPVADAKGHVTMQPLPPAKL 433

Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445
           A+I ++V  A G + +RGD++ + +  F       +        DI++          + 
Sbjct: 434 AQIEQLVKDAMGYDQKRGDSVNVVNSAFSTATDPYADLPWWRQPDIIAIAKEAAKWLGIA 493

Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505
                L       A+RR     +     +     +       A           + D   
Sbjct: 494 AAAAALYFMFVRPAMRRAFPPPEPAAPALAAPEDVVALDGLPAPA---------SADDEP 544

Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             +     N ++R    +          +   + +  A +++ W   E
Sbjct: 545 DTLLLGFENEKNRYERNLDYA-----RTIARQDPKIVATVVKNWVSDE 587


>gi|322833196|ref|YP_004213223.1| flagellar M-ring protein FliF [Rahnella sp. Y9602]
 gi|321168397|gb|ADW74096.1| flagellar M-ring protein FliF [Rahnella sp. Y9602]
          Length = 569

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 126/547 (23%), Positives = 237/547 (43%), Gaps = 55/547 (10%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
              +   P Y  L+  L   D   I   L++ NI ++ SDNG ++ +P+  V + R+ LA
Sbjct: 44  MMLWAKQPTYKVLFSNLGDQDGGAIVTQLTQMNIPYQFSDNGGALLIPADKVYETRLKLA 103

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
           A GLP   +  G+EL D+   FG++ F ++I   RALEGE++RTI+++  + +ARVH+ +
Sbjct: 104 AAGLPKGGA-VGFELMDQE-KFGISQFSEQINYQRALEGELSRTIETLGPVSSARVHLAI 161

Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           P    F +    P+ASV +              AI ++V+++V  L   +VTV+D +G L
Sbjct: 162 PKPSLFVREQKNPSASVTLNLQPGRALDDGQINAIVYMVSSSVSGLPPANVTVVDQSGHL 221

Query: 217 LT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LT ++   R++    L     ++  ++  I   L   +G  N  + + A+++  +++  +
Sbjct: 222 LTQSDNNGRDLNASQLKYANEVEGRLQRRIESILQPVVGNGNVHAQITAQIDYASREQTD 281

Query: 276 IVYDPDSKVERSIRLSKDAQRSE--------------TSQPESAVTVEQNMPHVSDRKVP 321
             Y P+   +++   S+    S+              ++QP  A T     P  ++    
Sbjct: 282 ENYQPNGSADKAAVRSRQLSTSDQIGASSVGGVPGALSNQPAPAATAPVTNPPAANNANG 341

Query: 322 LPRSL---------------ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
                                +  +++E +NYE++     T H    ++RLS AVVVN  
Sbjct: 342 TQNQTGNNAQNAATTANANVPSNRRRDETTNYEVDRTITHTQHSAGAVQRLSAAVVVNYQ 401

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
              +   +       D  L +I+ +V  A G +  RGDT+ + +  F E    +SG +  
Sbjct: 402 VGPDGKAK----PLTDDQLKKIDDLVREAMGFSQERGDTLNVVNTPFNEAA-DDSGELPF 456

Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486
                    F  ++NA  +L+  ++   L    +R +     A+K      ++ +  P  
Sbjct: 457 WKQQAF---FDQLLNAGRWLLVLIVAWLLWRKMVRPMLRKQQAEKDAAAAAALAATMPQP 513

Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546
                  + ND               +  Q R++  V  Q   R+  + + +    A ++
Sbjct: 514 EGSKPVKLSNDE----------LEKRKRSQQRVSVEVQTQ---RVQELADKDPRIVALVI 560

Query: 547 RKWARSE 553
           R+W  +E
Sbjct: 561 RQWMSTE 567


>gi|221201939|ref|ZP_03574976.1| flagellar M-ring protein FliF [Burkholderia multivorans CGD2M]
 gi|221207554|ref|ZP_03580562.1| flagellar M-ring protein FliF [Burkholderia multivorans CGD2]
 gi|221172400|gb|EEE04839.1| flagellar M-ring protein FliF [Burkholderia multivorans CGD2]
 gi|221178359|gb|EEE10769.1| flagellar M-ring protein FliF [Burkholderia multivorans CGD2M]
          Length = 587

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 127/525 (24%), Positives = 224/525 (42%), Gaps = 29/525 (5%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA 
Sbjct: 79  LWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPAAQVHETRLKLAAL 138

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D    FG++ F +++   RALEGE+ RTI+SI+ +  ARVH+ +P 
Sbjct: 139 GLPKGGA-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLAIPK 196

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +      V      +AI  +V++ VP++   +VT++D  G LLT
Sbjct: 197 PSVFVRDREAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGNLLT 256

Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
                  +    L  VQ ++   +  I+  LA   G  N RS V A+++    +     Y
Sbjct: 257 QPASATGLDASQLKYVQQVERNTQKRIDAILAPIFGAGNARSQVSADIDFSKLEQTSESY 316

Query: 279 DPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH-------VSDRKVPLPRSLEN 328
            P+   +++   S+    S     S          N P        V+      P++   
Sbjct: 317 GPNGSPQQAAIRSQQTSTSTELAQSGASGVPGALSNTPPQPASAPIVAGNGANAPQTTPV 376

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           +D+K++ +NYE++            ++RLS+AVVVN   + +  G    Q    + LA+I
Sbjct: 377 SDRKDQTTNYELDKTIRHVEQPMGTVKRLSVAVVVNYQPVADAKGHVTMQPLPPAKLAQI 436

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G +++RGD++ + +  F      N+        D+++          +    
Sbjct: 437 EQLVKDAMGYDAKRGDSVNVMNSAFSTATDPNADLPWWRQPDMIALAKEAAKWLGIAAAA 496

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
             L       A+RR                   PP  + A+    +  D +       + 
Sbjct: 497 AALYFMFVRPAMRR-------------AFPPPEPPAPALALPGEPVVLDGLPAPEPENES 543

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
            +     ++  N Y       R   +   + +  A +++ W   E
Sbjct: 544 DTALLAFENEKNRYERNLDYAR--TIARQDPKIVATVVKNWVSDE 586


>gi|221215779|ref|ZP_03588738.1| flagellar M-ring protein FliF [Burkholderia multivorans CGD1]
 gi|221164315|gb|EED96802.1| flagellar M-ring protein FliF [Burkholderia multivorans CGD1]
          Length = 587

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 127/525 (24%), Positives = 224/525 (42%), Gaps = 29/525 (5%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA 
Sbjct: 79  LWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPAAQVHETRLKLAAL 138

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D    FG++ F +++   RALEGE+ RTI+SI+ +  ARVH+ +P 
Sbjct: 139 GLPKGGA-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLAIPK 196

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +      V      +AI  +V++ VP++   +VT++D  G LLT
Sbjct: 197 PSVFVRDREAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGNLLT 256

Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
                  +    L  VQ ++   +  I+  LA   G  N RS V A+++    +     Y
Sbjct: 257 QPASATGLDASQLKYVQQVERNTQKRIDAILAPIFGAGNARSQVSADIDFSKLEQTSESY 316

Query: 279 DPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH-------VSDRKVPLPRSLEN 328
            P+   +++   S+    S     S          N P        V+      P++   
Sbjct: 317 GPNGSPQQAAIRSQQTSTSTELAQSGASGVPGALSNTPPQPASAPIVAGNGANAPQTTPV 376

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           +D+K++ +NYE++            ++RLS+AVVVN   + +  G    Q    + LA+I
Sbjct: 377 SDRKDQTTNYELDKTIRHVEQPMGTVKRLSVAVVVNYQPVADAKGHVTMQPLPPAKLAQI 436

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G +++RGD++ + +  F      N+        D+++          +    
Sbjct: 437 EQLVKDAMGYDAKRGDSVNVVNSAFSTATDPNADLPWWRQPDMIALAKEAAKWLGIAAAA 496

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
             L       A+RR                   PP  + A+    +  D +       + 
Sbjct: 497 AALYFMFVRPAMRR-------------AFPPPEPPAPALALPGEPVVLDGLPAPEPEDES 543

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
            +     ++  N Y       R   +   + +  A +++ W   E
Sbjct: 544 DTALLAFENEKNRYERNLDYAR--TIARQDPKIVATVVKNWVSDE 586


>gi|26991058|ref|NP_746483.1| flagellar MS-ring protein [Pseudomonas putida KT2440]
 gi|24986091|gb|AAN69947.1|AE016633_5 flagellar basal-body M-ring protein FliF [Pseudomonas putida
           KT2440]
          Length = 592

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 126/591 (21%), Positives = 248/591 (41%), Gaps = 67/591 (11%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           + F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  ++   L
Sbjct: 25  MAFLENISQMPMLRQIGLLVGLAASVAIGFAVVLWSQQPDYRPLYGSLSGMDTKQVMDTL 84

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + A+I + +  N  ++ V +  + +AR+ LAA G+  S  N G+EL DK    G + FM+
Sbjct: 85  AAADIPYNVEPNSGALLVKADDLSRARLKLAAAGVAPSDGNVGFELLDKEQGLGTSQFME 144

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
                R+LEGE+ART+ S++ + AARVH+ +P    F +   +P+ASV++        + 
Sbjct: 145 ATRYRRSLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDERKPSASVLVELYPGRALEA 204

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEM 243
               AI +LVA +VP LD   VTV+D  G LL+    +  +   GK     + ++  +  
Sbjct: 205 GQVMAIVNLVATSVPELDKSQVTVVDQKGNLLSEQIQDSALTQAGKQFDYSRRVESMLTQ 264

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            ++  L   LG D +++ V A+L+    +     ++PD    RS +   + + S    P+
Sbjct: 265 RVHNILQPVLGNDRYKAEVSADLDFSAVESTSEQFNPDQPALRSEQSVDEQRASSQG-PQ 323

Query: 304 SAVTVEQNMPHVSDRKV----------------------------------PLPRSLENT 329
                  N P  +                                      P+     + 
Sbjct: 324 GVPGALSNQPPGAASAPQTTGGAATPAAAIQPGQPLVDANGQQIMDPATGQPMLAPYPSD 383

Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEI 388
            +++   N+E++     T     ++ RLS+AVVV ++ ++    G +         LA  
Sbjct: 384 KRQQSTKNFELDRSISHTRQQQGRMARLSVAVVVDDQVKIDPATGDTTRAPWGAEDLARF 443

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALV 444
            ++V  A G ++ RGD++T+ ++ F  ++      +    Q  F DI+ +          
Sbjct: 444 TRLVQDAVGFDASRGDSVTVINVPFAADRGEEIADIAFYQQPWFWDIVKQ---------- 493

Query: 445 FLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSS 504
            ++G + +  L    LR + N       +    S +    +      G + ND ++L   
Sbjct: 494 -VLGVVFILVLVFGVLRPVLNNITGGGKQAAPDSDMELGGMMG--LDGELANDRVSLGGP 550

Query: 505 NQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
              +  S S   ++++N+         +  ++  +  R A++++ W  ++ 
Sbjct: 551 TSILLPSPSEGYEAQLNA---------IKGLVAEDPGRVAQVVKDWINADE 592


>gi|330972435|gb|EGH72501.1| flagellar MS-ring protein [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 594

 Score =  434 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 133/592 (22%), Positives = 246/592 (41%), Gaps = 66/592 (11%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           + F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L
Sbjct: 24  MSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + ANI++ +  N  ++ V S  V +ARI LA  G+  + +N G+E+ DK    G + FM+
Sbjct: 84  TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
                R LEGE+ARTI +++ +  ARVH+ +P    F +   +P+ASV++        + 
Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP L    +TV+D  G LL+  A   E  + GK     + ++  +  
Sbjct: 204 SQVMAIINLVATSVPELSKSQITVVDQKGTLLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA--------- 294
            +   L   LG D +++ V A ++    +     ++PD    RS +   +          
Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNEQRSSSSSSGG 323

Query: 295 -QRSETSQPESAVTVEQ----------------------NMPHVSDRKVPLPRSLENTDK 331
              + ++QP    T  Q                      N   + D     P        
Sbjct: 324 VPGALSNQPPGPATAPQTAGGGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPAD 383

Query: 332 K--EEQSNYEINTKSIATTHDNYKLERLSIAVVVNK-GRLTEVLGRSADQGKIDSYLAEI 388
           K  +   N+E++     T     +L RLS+AVVV+   +     G         + LA  
Sbjct: 384 KRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAADLARF 443

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALV 444
            ++V  A G ++ RGD++++ ++ F   +           Q  F DI+ +          
Sbjct: 444 TRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYSQPWFWDIVKQ---------- 493

Query: 445 FLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDS 503
             VG + +  L    LR  L+NI + K+ E+ G    +       +  G + ND ++L  
Sbjct: 494 -AVGVIFILILVFGVLRPVLNNITNGKRKELAGFGGDAELGGMGGL-DGELSNDRVSLGG 551

Query: 504 SNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
               +  S +    +++N+         +  ++  +  R A+++++W  ++ 
Sbjct: 552 PQSILLPSPTEGYDAQLNA---------IKSLVAEDPGRVAQVVKEWINTDE 594


>gi|238028887|ref|YP_002913118.1| flagellar MS-ring protein [Burkholderia glumae BGR1]
 gi|237878081|gb|ACR30414.1| Flagellar M-ring protein FliF [Burkholderia glumae BGR1]
          Length = 599

 Score =  434 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 133/526 (25%), Positives = 221/526 (42%), Gaps = 25/526 (4%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +ANI ++ +D G +I VP+S V + R+ LAA G
Sbjct: 84  WSRAPDYRVLYSNLSDRDGGAIITALQQANIPYQFADAGGAILVPASQVHETRLRLAAMG 143

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RTI SI+ + +ARVH+ +P  
Sbjct: 144 LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELERTIASINAVRSARVHLAIPKP 201

Query: 162 GSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV +      V       AI  +VA+ VP++   +VT++D  G LL+ 
Sbjct: 202 SVFVRDREAPSASVFVDLYPGRVLDDGQVLAITRMVASGVPDMPAKNVTIVDQDGNLLSQ 261

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ ++H  +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 262 QPSSSGLDANQLKYVQQVEHNTQKRIDAILAPMFGAGNTRSQVSADIDFTRSEQTSESYA 321

Query: 280 PDSK----VERSIRLSKDAQRSETSQPESAVTVEQNMPH-------VSDRKVPLPRSLEN 328
           P+        RS + S  +  S  S          N P                      
Sbjct: 322 PNGTQQQAAIRSQQTS-SSVESAQSGAGGVPGALSNTPPQPASAPITGASGAAGTPPTPI 380

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           +D+K+  +NYE++     T      ++RLS+AVVVN   + +  G    Q      L ++
Sbjct: 381 SDRKDSTTNYELDKTVRHTEAPTGGIKRLSVAVVVNNLPVVDAKGHVTMQPLTADKLKQV 440

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G +++RGD++ + +  F       +        D+++          +    
Sbjct: 441 EQLVKDAMGYDAKRGDSVNVVNSVFTTTADPLADLPWWRQPDMIALAKDAAKWLGIAAAA 500

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
             L       A+RR     +A        + L   P   A+     P+  +A DS    +
Sbjct: 501 AALYFMFVRPAMRRAFPPPEAAVANPALAAAL-GSPDEPALDGLPAPDSVVAEDSPEAAL 559

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIE-INEERFAKILRKWARSE 553
            +   +           + +L    MI   + +  A +++ W   E
Sbjct: 560 LAFEAD-------KHRYERNLDYAKMIARQDPKIVAAVVKNWVSDE 598


>gi|167568365|ref|ZP_02361239.1| flagellar MS-ring protein [Burkholderia oklahomensis C6786]
          Length = 554

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 130/525 (24%), Positives = 220/525 (41%), Gaps = 21/525 (4%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G ++ VP++ V + R+ LA+ G
Sbjct: 37  WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAVLVPANQVHETRLKLASMG 96

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RTI+SI+ + +ARVH+ +P  
Sbjct: 97  LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTIESINTVRSARVHLAIPKP 154

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++      V    +  A+  +V+++VP++   +VT++D  G LLT 
Sbjct: 155 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 214

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 215 TASASGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 274

Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH--------VSDRKVPLPRSLEN 328
           P+   +++   S+    +     S          N P          S+ +   P +   
Sbjct: 275 PNGAPQQTAIRSQQTSTATELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 334

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           +D+K+  +NYE++            ++RLS+AVVVN     +  GR   Q      LA+I
Sbjct: 335 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPAADAKGRVTMQPLTAEKLAQI 394

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G + +RGD++ + +  F       +        D++           V    
Sbjct: 395 QQLVKDAMGYDEKRGDSVNVVNSAFSTAADPFADLPWWRQPDMIELGKDIAKWLGVAAAA 454

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
             L       ALRR                     P  +    GL   D   L +   D 
Sbjct: 455 AALYFMFVRPALRRAFPPPAEPAA---AAVPALDGPNDAIALDGLPSPDKKQL-ADEDDE 510

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                  +S  N Y       R   +   + +  A +++ W   E
Sbjct: 511 HPALLAFESEKNRYERNLDYAR--TIARQDPKIVATVVKNWVSDE 553


>gi|146282929|ref|YP_001173082.1| flagellar MS-ring protein [Pseudomonas stutzeri A1501]
 gi|145571134|gb|ABP80240.1| flagellar M-ring protein [Pseudomonas stutzeri A1501]
          Length = 585

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 126/591 (21%), Positives = 247/591 (41%), Gaps = 64/591 (10%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  L   L   D N++   L
Sbjct: 15  LSFLENLSEMSMLRQIGLLVGLAASVAMGFAVVLWSQQPDYRPLLGSLAGMDANQVMETL 74

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + A+I + +  N  ++ V ++ + +AR+ LA  G+  + SN G+E+ DK    G + FM+
Sbjct: 75  AAADIAYTVEPNSGALLVKANDLARARLKLAGAGIAPADSNIGFEILDKDQGLGTSQFME 134

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
                R LEGE+ RTI S++ +  ARVH+ +P    F +   +P+ASV++        + 
Sbjct: 135 ATRYRRGLEGELGRTISSLNNVKGARVHLAIPKSSVFVRDERKPSASVLVELYPGRALEP 194

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP L+   +TV+D  G LL+  +   E ++ GK     + ++     
Sbjct: 195 SQVMAIINLVATSVPELNKSQITVVDQKGNLLSDQQELTELSMAGKQFDYSRRMESLYTQ 254

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            ++  L   LG   +++ V A+++    +     ++PD    RS +   + ++S +  P+
Sbjct: 255 RVHNILQPVLGSGRYKAEVSADVDFSAVESTSETFNPDQPALRSEQSVNEQRQS-SLPPQ 313

Query: 304 SAVTVEQNMPHVSD----------------------------------RKVPLPRSLENT 329
                  N P                                         P+       
Sbjct: 314 GVPGALSNQPPGPASAPEQANQAAAAAGAVAPGQPLVDANGQQIMDPVTGQPMLAPFPAD 373

Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEIN 389
            +++   NYE++     T   + +L RLS+AVVV+        G           LA   
Sbjct: 374 KREQATRNYELDRSISYTKQQHGRLRRLSVAVVVDDQMSLNAAGEMVRVPWNADDLARFT 433

Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTV-----QVSFMDILSRHFATVINALV 444
           ++V  A G ++ RGD++++ +  F+ +    +        Q  F D++ +    V+  LV
Sbjct: 434 RLVQDAVGFDASRGDSVSVINTAFVADSFGETFEEIPFYSQPWFWDVV-KQVLGVLFILV 492

Query: 445 FLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSS 504
            + G L         L+ L N +  K+ +V G               G + ND ++L   
Sbjct: 493 LVFGVL------RPVLKSLTNPNAGKELQVAGMPGELGEDEG---LDGGLANDRVSLSGP 543

Query: 505 NQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
              +  S S   ++++N+         + +++  +  R A+++++W  ++ 
Sbjct: 544 QNILLPSPSEGYEAQLNA---------IKNLVADDPGRVAQVVKEWINADE 585


>gi|310767344|gb|ADP12294.1| flagellar MS-ring protein [Erwinia sp. Ejp617]
          Length = 569

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 131/546 (23%), Positives = 235/546 (43%), Gaps = 54/546 (9%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  L+  L   D   I   L++ N+ ++  D G ++ VP++ V + R+ LA+Q
Sbjct: 46  LWAKQPDYRVLFSNLSNEDGGTIVTQLTQMNVPYKFDDQGGALLVPAAQVHELRLRLASQ 105

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL DK   FG++ F +++   RALEGE+ARTI ++  +  ARVH+ MP 
Sbjct: 106 GLPKGGA-VGFELLDKE-KFGISQFSEQVNYQRALEGELARTISTLGPVKDARVHLAMPK 163

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +              A+ H+V+++V  +  G+VTV+D  G+LLT
Sbjct: 164 PTLFVREQKSPSASVTLALQPGRALDEGQINAVVHMVSSSVAGMPPGNVTVVDQAGRLLT 223

Query: 219 ANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            N+   R++    L     ++   +  I   L   LG  N  + V A+++ + ++  +  
Sbjct: 224 QNDSGGRDLNDTQLKYANDVETRYQQRIEAILGPILGNGNVHAQVTAQIDFNKREKTDEQ 283

Query: 278 YDPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDRKVPLP----------- 323
           Y P+S+ ++    S+    SE    S          N P  ++     P           
Sbjct: 284 YSPNSQPDQQAIRSRQTSNSEQLGGSSAGGVPGALSNQPAPANAAPVTPANNNANNANAN 343

Query: 324 ---------------RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368
                          +++ +  + +  +NYE+N   + T  +  +++RLS+AVVVN    
Sbjct: 344 ANNGQPANNAANAAQKTVPSNTRSDNTTNYEVNRTILHTKMNVGEVQRLSVAVVVNY--- 400

Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSF 428
                        D+ + +I  +   A G + +RGD++ + +  F +N    +       
Sbjct: 401 -RADAAGKPIALKDAQIKQIENLTREAMGFSEQRGDSLNVVNSQFTDNSDLAAELPFWKQ 459

Query: 429 MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSA 488
              + + F      LV +V  +L   L    LRR      A +      +  S      A
Sbjct: 460 PAFIDQLFNAGRWLLVLIVAFILYRKLVSPQLRRKAEQQKAAEEAAINAARSSTRDEGVA 519

Query: 489 VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRK 548
           V             S ++D  +  R  Q R+++ V  Q   R+  M E +    A ++R+
Sbjct: 520 V-------------SLSKDELNQERKSQHRMSAEVLSQ---RIREMSENDPRVVALVIRQ 563

Query: 549 WARSEI 554
           W + E+
Sbjct: 564 WMKDEL 569


>gi|66046686|ref|YP_236527.1| flagellar MS-ring protein [Pseudomonas syringae pv. syringae B728a]
 gi|63257393|gb|AAY38489.1| Flagellar FliF M-ring protein [Pseudomonas syringae pv. syringae
           B728a]
          Length = 594

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 133/592 (22%), Positives = 246/592 (41%), Gaps = 66/592 (11%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           + F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L
Sbjct: 24  MSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + ANI++ +  N  ++ V S  V +ARI LA  G+  + +N G+E+ DK    G + FM+
Sbjct: 84  TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
                R LEGE+ARTI +++ +  ARVH+ +P    F +   +P+ASV++        + 
Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP L    +TV+D  G LL+  A   E  + GK     + ++  +  
Sbjct: 204 SQVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA--------- 294
            +   L   LG D +++ V A ++    +     ++PD    RS +   +          
Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNEQRSSSSSSGG 323

Query: 295 -QRSETSQPESAVTVEQ----------------------NMPHVSDRKVPLPRSLENTDK 331
              + ++QP    T  Q                      N   + D     P        
Sbjct: 324 VPGALSNQPPGPATAPQTAGGGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPAD 383

Query: 332 K--EEQSNYEINTKSIATTHDNYKLERLSIAVVVNK-GRLTEVLGRSADQGKIDSYLAEI 388
           K  +   N+E++     T     +L RLS+AVVV+   +     G         + LA  
Sbjct: 384 KRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAADLARF 443

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALV 444
            ++V  A G ++ RGD++++ ++ F   +           Q  F DI+ +          
Sbjct: 444 TRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYSQPWFWDIVKQ---------- 493

Query: 445 FLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDS 503
             VG + +  L    LR  L+NI + K+ E+ G    +       +  G + ND ++L  
Sbjct: 494 -AVGVIFILILVFGVLRPVLNNITNGKRKELAGFGGDAELGGMGGL-DGELSNDRVSLGG 551

Query: 504 SNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
               +  S +    +++N+         +  ++  +  R A+++++W  ++ 
Sbjct: 552 PQSILLPSPTEGYDAQLNA---------IKSLVAEDPGRVAQVVKEWINTDE 594


>gi|330876010|gb|EGH10159.1| flagellar MS-ring protein [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
 gi|330967111|gb|EGH67371.1| flagellar MS-ring protein [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 594

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 133/593 (22%), Positives = 240/593 (40%), Gaps = 68/593 (11%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L
Sbjct: 24  LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + ANI++ +  N  ++ V S  V +ARI LA  G+  + +N G+E+ DK    G + FM+
Sbjct: 84  TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
                R LEGE+ARTI +++ +  ARVH+ +P    F +   +P+ASV++        + 
Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP L    +TV+D  G LL+  A   E  + GK     + ++  +  
Sbjct: 204 SQVLAIINLVATSVPELSKSQITVVDQKGTLLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            +   L   LG D +++ V A ++    +     ++PD    RS +   + QRS +S   
Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNE-QRSSSSSTG 322

Query: 304 SAVTVEQNMPHV-----------------------------------SDRKVPLPRSLEN 328
                  N P                                          P       
Sbjct: 323 GVPGALSNQPPGPATAPQNAAAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPA 382

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK-GRLTEVLGRSADQGKIDSYLAE 387
             + +   N+E++     T     +L RLS+AVVV+   +     G  +      + LA 
Sbjct: 383 DKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVSRAPWSAADLAR 442

Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINAL 443
             ++V  A G ++ RGD++++ ++ F   +           Q  F DI+ +         
Sbjct: 443 FTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYTQPWFWDIVKQ--------- 493

Query: 444 VFLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALD 502
              VG + +  L    LR  L+NI   K  E+ G               G + ND ++L 
Sbjct: 494 --AVGVIFILILVFGVLRPVLNNITSGKSKELAGFGG-DAELGGMGGLDGELSNDRVSLG 550

Query: 503 SSNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
                +  S +    +++N+         +  ++  +  R A+++++W  ++ 
Sbjct: 551 GPQSILLPSPTEGYDAQLNA---------IKSLVAEDPGRVAQVVKEWINTDE 594


>gi|85713555|ref|ZP_01044545.1| flagellar M-ring protein [Nitrobacter sp. Nb-311A]
 gi|85699459|gb|EAQ37326.1| flagellar M-ring protein [Nitrobacter sp. Nb-311A]
          Length = 541

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 146/552 (26%), Positives = 252/552 (45%), Gaps = 16/552 (2%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +  LL F K    LG +R++ + +V  V I  F      V +P    L+  L V D + I
Sbjct: 1   MQGLLAFLKG---LGASRLMAMVAVTTVLIAFFAFVIMRVTTPQMTTLFTDLSVEDSSGI 57

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    I F + ++G+ I VP   V + R+ LA  GLP      GYE+FDK ++ G T
Sbjct: 58  IKDLERQAIPFELRNDGAVIMVPKDKVTRLRMKLAEAGLPKGGG-VGYEIFDKSDALGTT 116

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
           SF+Q I R+RALEGE+ARTI++I  I  ARVH+V+P+   F +   +P+AS+++R     
Sbjct: 117 SFVQNINRLRALEGELARTIRAIDRIQDARVHLVLPERPLFTREAPQPSASIVVRVRGGL 176

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEM 243
             +   AIRHLVA+AV  L    V+++D TG+LL                  A +  +  
Sbjct: 177 EPQQIRAIRHLVASAVNGLKPQRVSIVDETGQLLADGSTTDADGVTGDERRTAFEKRMRS 236

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            +   +++ +G    R  + A+ + +        +DP+ +V RS +  +++  S T+   
Sbjct: 237 QVEAIVSSVVGNGRARVQLSADFDYNKITQTSDTFDPEGRVLRSSQTREES--SLTADNN 294

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
             VTV   +P       P  ++ + + K EE +NYEI+  +     +  ++ R+S+AV+V
Sbjct: 295 GQVTVNNELPGNQPSDNPN-QARDQSKKSEETNNYEISRTTKTEVSEAGRVNRISVAVLV 353

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           +     +  G+     +    L  I  +V +A G + +RGD + + ++ F E        
Sbjct: 354 DGTYAKDDKGQMVYTERSKEQLDRIATLVRSAIGFDQKRGDQVEVVNLRFAEPPAIVPLA 413

Query: 424 VQVSFMDIL---SRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
                + ++          +   V  +  L+V F+ +  L +     +     V   + L
Sbjct: 414 EPAGLLGMIALTKDDVMYFVELAVMALLGLVVVFMVIRPLVQRILAAEPAAASVPPAAAL 473

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
             P  ++A  T    N     +++ Q I        +++   V  QS  R+  + E N  
Sbjct: 474 PVPADANAQPTATGQNLIPGSNATAQLI------DVAQVQGQVHAQSVHRVGELAERNPT 527

Query: 541 RFAKILRKWARS 552
             A I+R+W   
Sbjct: 528 ETASIIRQWLAE 539


>gi|28869162|ref|NP_791781.1| flagellar M-ring protein FliF [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213967561|ref|ZP_03395709.1| flagellar M-ring protein FliF [Pseudomonas syringae pv. tomato T1]
 gi|301385734|ref|ZP_07234152.1| flagellar MS-ring protein [Pseudomonas syringae pv. tomato Max13]
 gi|302059423|ref|ZP_07250964.1| flagellar MS-ring protein [Pseudomonas syringae pv. tomato K40]
 gi|302134812|ref|ZP_07260802.1| flagellar MS-ring protein [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|28852402|gb|AAO55476.1| flagellar M-ring protein FliF [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213927862|gb|EEB61409.1| flagellar M-ring protein FliF [Pseudomonas syringae pv. tomato T1]
          Length = 594

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 133/593 (22%), Positives = 240/593 (40%), Gaps = 68/593 (11%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L
Sbjct: 24  LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + ANI++ +  N  ++ V S  V +ARI LA  G+  + +N G+E+ DK    G + FM+
Sbjct: 84  TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
                R LEGE+ARTI +++ +  ARVH+ +P    F +   +P+ASV++        + 
Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP L    +TV+D  G LL+  A   E  + GK     + ++  +  
Sbjct: 204 SQVLAIINLVATSVPELSKSQITVVDQKGTLLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            +   L   LG D +++ V A ++    +     ++PD    RS +   + QRS +S   
Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNE-QRSSSSSTG 322

Query: 304 SAVTVEQNMPHV-----------------------------------SDRKVPLPRSLEN 328
                  N P                                          P       
Sbjct: 323 GVPGALSNQPPGPATAPQNAAAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPA 382

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK-GRLTEVLGRSADQGKIDSYLAE 387
             + +   N+E++     T     +L RLS+AVVV+   +     G  +      + LA 
Sbjct: 383 DKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVSRAPWSAADLAR 442

Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINAL 443
             ++V  A G ++ RGD++++ ++ F   +           Q  F DI+ +         
Sbjct: 443 FTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYSQPWFWDIVKQ--------- 493

Query: 444 VFLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALD 502
              VG + +  L    LR  L+NI   K  E+ G               G + ND ++L 
Sbjct: 494 --AVGVIFILILVFGVLRPVLNNITSGKSKELAGFGG-DAELGGMGGLDGELSNDRVSLG 550

Query: 503 SSNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
                +  S +    +++N+         +  ++  +  R A+++++W  ++ 
Sbjct: 551 GPQSILLPSPTEGYDAQLNA---------IKSLVAEDPGRVAQVVKEWINTDE 594


>gi|330953748|gb|EGH54008.1| flagellar MS-ring protein [Pseudomonas syringae Cit 7]
          Length = 594

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 133/592 (22%), Positives = 244/592 (41%), Gaps = 66/592 (11%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           + F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L
Sbjct: 24  MSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + ANI++ +  N  ++ V S  V +ARI LA  G+  + +N G+E+ DK    G + FM+
Sbjct: 84  TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
                R LEGE+ARTI +++ +  ARVH+ +P    F +   +P+ASV++        + 
Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP L    +TV+D  G LL+  A   E  + GK     + ++  +  
Sbjct: 204 SQVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMESMLTQ 263

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA--------- 294
            +   L   LG D +++ V A ++    +     ++PD    RS +   +          
Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNEQRSSSSSSGG 323

Query: 295 -QRSETSQPESAVTVEQ----------------------NMPHVSDRKVPLPRSLENTDK 331
              + ++QP    T  Q                      N   + D     P        
Sbjct: 324 VPGALSNQPPGPATAPQTAGGGAAGAAGPIAPGQPLLDANGQQIMDPGTGQPALAPYPAD 383

Query: 332 K--EEQSNYEINTKSIATTHDNYKLERLSIAVVVNK-GRLTEVLGRSADQGKIDSYLAEI 388
           K  +   N+E++     T     +L RLS+AVVV+   +     G         + LA  
Sbjct: 384 KRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAADLARF 443

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALV 444
            ++V  A G ++ RGD++++ ++ F   +           Q  F DI+ +          
Sbjct: 444 TRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYSQPWFWDIVKQ---------- 493

Query: 445 FLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDS 503
             VG + +  L    LR  L+NI + K+ E+ G               G + ND ++L  
Sbjct: 494 -AVGVIFILILVFGVLRPVLNNITNGKRKELAGFGG-DAELGGMGGLDGELSNDRVSLGG 551

Query: 504 SNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
               +  S +    +++N+         +  ++  +  R A+++++W  ++ 
Sbjct: 552 PQSILLPSPTEGYDAQLNA---------IKSLVAEDPGRVAQVVKEWINTDE 594


>gi|237799234|ref|ZP_04587695.1| flagellar MS-ring protein [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331022089|gb|EGI02146.1| flagellar MS-ring protein [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 595

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 131/592 (22%), Positives = 244/592 (41%), Gaps = 65/592 (10%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L
Sbjct: 24  LSFLENLSEMTMLRQVGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGLDSKQIMETL 83

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + ANI++ +  N  ++ V S  V +ARI LA  G+  + +N G+E+ DK    G + FM+
Sbjct: 84  TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
                R LEGE+ARTI +++ + AARVH+ +P    F +   +P+ASV++        + 
Sbjct: 144 ATRYRRGLEGELARTISALNNVKAARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP L    +TV+D  G LL+  A   E  + GK     + ++  +  
Sbjct: 204 SQVLAIINLVATSVPELSKSQITVVDQKGTLLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA--------- 294
            +   L   LG D +++ V A ++    +     ++PD    RS +   +          
Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNEQRSSSSGSGG 323

Query: 295 -QRSETSQPESAVTVEQ----------------------NMPHVSDRKVPLPRSLE--NT 329
              + ++QP    T  Q                      N   + D     P        
Sbjct: 324 VPGALSNQPPGPATAPQTAGAGGAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPFPAD 383

Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK-GRLTEVLGRSADQGKIDSYLAEI 388
            + +   N+E++     T     +L RLS+AVVV+   +     G  +      + LA  
Sbjct: 384 KRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVSRAPWSAADLARF 443

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALV 444
            ++V  A G ++ RGD++++ ++ F   +           Q  F D++ +          
Sbjct: 444 TRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYSQPWFWDLVKQ---------- 493

Query: 445 FLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDS 503
             VG + +  L    LR  L+NI + K  ++                 G + ND ++L  
Sbjct: 494 -AVGVIFILILVFGVLRPVLNNITNGKSKQLAAFGGGDAELGGMGGLDGELSNDRVSLGG 552

Query: 504 SNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
               +  S +    +++N+         +  ++  +  R A+++++W  ++ 
Sbjct: 553 PQSILLPSPTEGYDAQLNA---------IKSLVAEDPGRVAQVVKEWINTDE 595


>gi|284159411|ref|YP_440758.3| flagellar MS-ring protein [Burkholderia thailandensis E264]
 gi|83653465|gb|ABC37528.1| flagellar M-ring protein FliF [Burkholderia thailandensis E264]
          Length = 677

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 135/525 (25%), Positives = 221/525 (42%), Gaps = 22/525 (4%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 161 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 220

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++S++ + AARVH+ +P  
Sbjct: 221 LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTVESVNAVRAARVHLAIPKP 278

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++      V    +  AI  LV+++VP++   +VT++D  G LLT 
Sbjct: 279 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAITRLVSSSVPDMPAKNVTIVDQDGNLLTQ 338

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 339 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYA 398

Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH--------VSDRKVPLPRSLEN 328
           P+   ++S   S+    S     S          N P          S+ +   P +   
Sbjct: 399 PNGTPQQSAIRSQQTSTSTELAQSGTSGVPGALSNTPPQPASAPIVASNGQPAAPAATPV 458

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           +D+K+  +NYE++            ++RLS+AVVVN    T+  GR   Q      LA++
Sbjct: 459 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLTADKLAQV 518

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G + +RGD++ + +  F       +        D++           V    
Sbjct: 519 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 578

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
             L       ALRR           V         P  +    GL   D   L     + 
Sbjct: 579 AALYFMFVRPALRRAFPPPAEPAAAVPALDG----PDDALALDGLPSPDKKQLAE-EDEE 633

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                  +S  N Y       R   +   + +  A +++ W   E
Sbjct: 634 HPALLAFESEKNRYERNLDYAR--TIARQDPKIVATVVKNWVSDE 676


>gi|171321708|ref|ZP_02910625.1| flagellar M-ring protein FliF [Burkholderia ambifaria MEX-5]
 gi|171093009|gb|EDT38241.1| flagellar M-ring protein FliF [Burkholderia ambifaria MEX-5]
          Length = 587

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 126/528 (23%), Positives = 218/528 (41%), Gaps = 29/528 (5%)

Query: 38  AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97
           A   +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VPS+ V + R+ L
Sbjct: 76  ALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSNQVHETRLKL 135

Query: 98  AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
           AA GLP   S  G+EL D    FG++ F +++   RALEGE+ RTI+SI+ +  ARVH+ 
Sbjct: 136 AALGLPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLA 193

Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
           +P    F +    P+ASV +      V      +AI  +V++ VP++   +VT++D  G 
Sbjct: 194 IPKPSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGN 253

Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LLT       +    L  VQ ++   +  I+  LA   G  N RS V A+++    +   
Sbjct: 254 LLTQTASASGLDASQLKYVQQVERNTQKRIDAILAPIFGTGNARSQVSADIDFSKLEQTS 313

Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPH-------VSDRKVPLPRS 325
             Y P+   +++   S+    +       A  V     N P        V+       +S
Sbjct: 314 ESYAPNGTPQQAAIRSQQTSSATELAQGGASGVPGALSNTPPQPASAPIVAGNGQNGAQS 373

Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385
              +D+K++ +NYE++            ++RLS+AVVVN   + +  G    Q      L
Sbjct: 374 TPVSDRKDQTTNYELDKTIRHVEQPMGNVKRLSVAVVVNYQPVADAKGHVTMQPLPPPKL 433

Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445
           A+I ++V  A G + +RGD++ + +  F       +        D+++          + 
Sbjct: 434 AQIEQLVKDAMGYDEKRGDSVNVVNSAFSSVGDPYADLPWWRQPDMIAMAKEAAKWLGIA 493

Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505
                L       A+RR     +     +             A      P+         
Sbjct: 494 AAAAALYFMFVRPAMRRAFPPPEPAAPALAAPDDPVALDGLPAPERADEPDP-------- 545

Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             +     N ++R    +          +   + +  A +++ W   E
Sbjct: 546 --LLLGFENEKNRYERNLDYA-----RTIARQDPKIVATVVKNWVSDE 586


>gi|331017004|gb|EGH97060.1| flagellar MS-ring protein [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 594

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 133/593 (22%), Positives = 240/593 (40%), Gaps = 68/593 (11%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L
Sbjct: 24  LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGIDSKQIMDTL 83

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + ANI++ +  N  ++ V S  V +ARI LA  G+  + +N G+E+ DK    G + FM+
Sbjct: 84  TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
                R LEGE+ARTI +++ +  ARVH+ +P    F +   +P+ASV++        + 
Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP L    +TV+D  G LL+  A   E  + GK     + ++  +  
Sbjct: 204 SQVLAIINLVATSVPELSKSQITVVDQKGTLLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            +   L   LG D +++ V A ++    +     ++PD    RS +   + QRS +S   
Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNE-QRSSSSSTG 322

Query: 304 SAVTVEQNMPHV-----------------------------------SDRKVPLPRSLEN 328
                  N P                                          P       
Sbjct: 323 GVPGALSNQPPGPATAPQNAAAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPA 382

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK-GRLTEVLGRSADQGKIDSYLAE 387
             + +   N+E++     T     +L RLS+AVVV+   +     G  +      + LA 
Sbjct: 383 DKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVSRAPWSAADLAR 442

Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINAL 443
             ++V  A G ++ RGD++++ ++ F   +           Q  F DI+ +         
Sbjct: 443 FTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYSQPWFWDIVKQ--------- 493

Query: 444 VFLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALD 502
              VG + +  L    LR  L+NI   K  E+ G               G + ND ++L 
Sbjct: 494 --AVGVIFILILVFGVLRPVLNNITSGKSKELAGFGG-DAELGGMGGLDGELSNDRVSLG 550

Query: 503 SSNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
                +  S +    +++N+         +  ++  +  R A+++++W  ++ 
Sbjct: 551 GPQSILLPSPTEGYDAQLNA---------IKSLVAEDPGRVAQVVKEWINTDE 594


>gi|302185562|ref|ZP_07262235.1| flagellar MS-ring protein [Pseudomonas syringae pv. syringae 642]
          Length = 594

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 133/592 (22%), Positives = 246/592 (41%), Gaps = 66/592 (11%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           + F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L
Sbjct: 24  MSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + ANI++ +  N  ++ V S  V +ARI LA  G+  + +N G+E+ DK    G + FM+
Sbjct: 84  TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
                R LEGE+ARTI +++ +  ARVH+ +P    F +   +P+ASV++        + 
Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP L    +TV+D  G LL+  A   E  + GK     + ++  +  
Sbjct: 204 SQVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMESMLTQ 263

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA--------- 294
            +   L   LG D +++ V A ++    +     ++PD    RS +   +          
Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNEQRSSGSSSGG 323

Query: 295 -QRSETSQPESAVTVEQ----------------------NMPHVSDRKVPLPRSLENTDK 331
              + ++QP    T  Q                      N   + D     P        
Sbjct: 324 VPGALSNQPPGPATAPQTAGGGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPAD 383

Query: 332 K--EEQSNYEINTKSIATTHDNYKLERLSIAVVVNK-GRLTEVLGRSADQGKIDSYLAEI 388
           K  +   N+E++     T     +L RLS+AVVV+   +     G         + LA  
Sbjct: 384 KRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAADLARF 443

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALV 444
            ++V  A G ++ RGD++++ ++ F   +           Q  F DI+ +          
Sbjct: 444 TRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYSQPWFWDIVKQ---------- 493

Query: 445 FLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDS 503
             VG + +  L    LR  L+NI + K+ E+ G    +       +  G + ND ++L  
Sbjct: 494 -AVGVIFILILVFGVLRPVLNNITNGKRKELAGFGGDAELGGMGGL-DGELSNDRVSLGG 551

Query: 504 SNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
               +  S +    +++N+         +  ++  +  R A+++++W  ++ 
Sbjct: 552 PQSILLPSPTEGYDAQLNA---------IKSLVAEDPGRVAQVVKEWINTDE 594


>gi|205360167|ref|ZP_02835012.2| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205340693|gb|EDZ27457.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
          Length = 579

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 131/542 (24%), Positives = 233/542 (42%), Gaps = 52/542 (9%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 63  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 122

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 123 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 180

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +              A+ HLV++AV  L  G+VT++D +G LLT
Sbjct: 181 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 240

Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  E  
Sbjct: 241 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 300

Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------------HVSDRKV 320
           Y P+    ++   S+    SE      P        N P                + +  
Sbjct: 301 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 360

Query: 321 PLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373
           P   +  N++        + E SNYE++     T  +   +ERLS+AVVVN   L +   
Sbjct: 361 PQTSTSNNSNNAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP 420

Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433
                      + +I  +   A G + +RGDT+ + +  F      +    ++ F    S
Sbjct: 421 L----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDDTGGELPFWQQQS 473

Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493
                ++ A  +L+  ++   L   A+R        ++ +   +          AV   L
Sbjct: 474 -FIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRL 531

Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             ++ +    +NQ           R+ + V  Q   R+  M + +    A ++R+W  ++
Sbjct: 532 SKDEQLQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 577

Query: 554 IE 555
            E
Sbjct: 578 HE 579


>gi|327481269|gb|AEA84579.1| flagellar MS-ring protein [Pseudomonas stutzeri DSM 4166]
          Length = 594

 Score =  432 bits (1110), Expect = e-119,   Method: Composition-based stats.
 Identities = 126/591 (21%), Positives = 247/591 (41%), Gaps = 64/591 (10%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  L   L   D N++   L
Sbjct: 24  LSFLENLSEMSMLRQIGLLVGLAASVAMGFAVVLWSQQPDYRPLLGSLAGMDANQVMETL 83

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + A+I + +  N  ++ V ++ + +AR+ LA  G+  + SN G+E+ DK    G + FM+
Sbjct: 84  AAADIAYTVEPNSGALLVKANDLARARLKLAGAGIAPADSNIGFEILDKDQGLGTSQFME 143

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
                R LEGE+ RTI S++ +  ARVH+ +P    F +   +P+ASV++        + 
Sbjct: 144 ATRYRRGLEGELGRTISSLNNVKGARVHLAIPKSSVFVRDERKPSASVLVELYPGRALEP 203

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP L+   +TV+D  G LL+  +   E ++ GK     + ++     
Sbjct: 204 SQVMAIINLVATSVPELNKSQITVVDQKGNLLSDQQELTELSMAGKQFDYSRRMESLYTQ 263

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            ++  L   LG   +++ V A+++    +     ++PD    RS +   + ++S +  P+
Sbjct: 264 RVHNILQPVLGSGRYKAEVSADVDFSAVESTSETFNPDQPALRSEQSVNEQRQS-SLPPQ 322

Query: 304 SAVTVEQNMPHVSD----------------------------------RKVPLPRSLENT 329
                  N P                                         P+       
Sbjct: 323 GVPGALSNQPPGPASAPEQANQAAAAAGAVAPGQPLVDANGQQIMDPVTGQPMLAPFPAD 382

Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEIN 389
            +++   NYE++     T   + +L RLS+AVVV+        G           LA   
Sbjct: 383 KREQATRNYELDRSISYTKQQHGRLRRLSVAVVVDDQMSLNAAGEMVRVPWNADDLARFT 442

Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTV-----QVSFMDILSRHFATVINALV 444
           ++V  A G ++ RGD++++ +  F+ +    +        Q  F D++ +    V+  LV
Sbjct: 443 RLVQDAVGFDASRGDSVSVINTAFVADSFGETFEEIPFYSQPWFWDVV-KQVLGVLFILV 501

Query: 445 FLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSS 504
            + G L         L+ L N +  K+ +V G               G + ND ++L   
Sbjct: 502 LVFGVL------RPVLKSLTNPNAGKELQVAGMPGELGEDEG---LDGGLANDRVSLSGP 552

Query: 505 NQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
              +  S S   ++++N+         + +++  +  R A+++++W  ++ 
Sbjct: 553 QNILLPSPSEGYEAQLNA---------IKNLVADDPGRVAQVVKEWINADE 594


>gi|229591853|ref|YP_002873972.1| flagellar MS-ring protein [Pseudomonas fluorescens SBW25]
 gi|229363719|emb|CAY51114.1| flagellar M-ring protein [Pseudomonas fluorescens SBW25]
          Length = 593

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 127/592 (21%), Positives = 239/592 (40%), Gaps = 65/592 (10%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L
Sbjct: 22  LSFLENLSEMTMLRQVGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMETL 81

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + A+I + +  N  ++ V +  V +AR+ LAA G+  S SN G+E+ DK    G + FM+
Sbjct: 82  AAADIAYTVEPNSGALLVKADDVARARMKLAAAGVTPSDSNIGFEILDKDQGLGTSQFME 141

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
                R LEGE+ARTI S++ +  ARVH+ +P    F +   +P+ASV++   +    + 
Sbjct: 142 ATRYRRGLEGELARTISSLNNVKGARVHLAIPKSSVFVRDERKPSASVLVELFSGRSLEP 201

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEM 243
               AI +LVA +VP L    +TV+D  G LL+       +   GK     + ++  +  
Sbjct: 202 GQVLAIVNLVATSVPELSKSQITVVDQKGNLLSDQGENSALTQAGKQFDYSRRVESMLTQ 261

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            ++  L   LG D +++ V A+++    +     ++PD    RS + + + + +    P+
Sbjct: 262 RVHNILQPVLGNDRYKAEVSADVDFSAVESTSEQFNPDQPALRSEQSTSEQRTAANGPPQ 321

Query: 304 SAVTVEQNMPHVSDRKV----------------------------------PLPRSLENT 329
                  N P                                         P+       
Sbjct: 322 GVPGALSNQPPAPASAPQTTGGAAATAGAIQPGQPLLDANGQQIMDPATGQPMLAPYPAD 381

Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEI 388
            + +   N+E++     T     ++ RLS++VVV+         G           LA  
Sbjct: 382 KRNQSTKNFELDRSISHTKQQQGRVNRLSVSVVVDDQVKVNAADGAVTRAPWSADELARF 441

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALV 444
            ++V  A G ++ RGD++++ +M F   +           Q  F DI+ +          
Sbjct: 442 TRLVQDAVGFDASRGDSVSVINMPFSAERGEVIAEPAFYSQPWFWDIVKQ---------- 491

Query: 445 FLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDS 503
            ++G L +  L    LR  L+NI    K ++                 G + ND ++L  
Sbjct: 492 -VLGVLFILVLVFGVLRPVLNNITGNGKKQLAAFGGSDVELGGMGGLDGELANDRVSLGG 550

Query: 504 SNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
               +  S S    +++N+         +  ++  +  R A+++++W  ++ 
Sbjct: 551 PQSILLPSPSEGYDAQLNA---------IKSLVAEDPGRVAQVVKEWINADE 593


>gi|198243509|ref|YP_002215117.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|197938025|gb|ACH75358.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
          Length = 576

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 131/542 (24%), Positives = 234/542 (43%), Gaps = 52/542 (9%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 60  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 119

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 120 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 177

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +              A+ HLV++AV  L  G+VT++D +G LLT
Sbjct: 178 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 237

Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  E  
Sbjct: 238 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 297

Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------------HVSDRKV 320
           Y P+    ++   S+    SE      P        N P                + +  
Sbjct: 298 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 357

Query: 321 PLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373
           P   +  N++        + E SNYE++     T  +   +ERLS+AVVVN   L +   
Sbjct: 358 PQTSTSTNSNSAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP 417

Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433
                      + +I  +   A G + +RGDT+ + +  F      ++   ++ F    S
Sbjct: 418 L----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDNTGGELPFWQQQS 470

Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493
                ++ A  +L+  ++   L   A+R        ++ +   +          AV   L
Sbjct: 471 -FIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRL 528

Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             ++ +    +NQ           R+ + V  Q   R+  M + +    A ++R+W  ++
Sbjct: 529 SKDEQLQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 574

Query: 554 IE 555
            E
Sbjct: 575 HE 576


>gi|296103558|ref|YP_003613704.1| flagellar MS-ring protein [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295058017|gb|ADF62755.1| flagellar MS-ring protein [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 559

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 129/543 (23%), Positives = 236/543 (43%), Gaps = 51/543 (9%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
              +  SP Y  LY  L   D   I   L++ NI +R +DNG ++ VP+  V + R+ LA
Sbjct: 42  MVLWAKSPDYRTLYSNLSDQDGGAIVTQLTQMNIPYRFADNGGALEVPADKVHELRLRLA 101

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
            QGLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ M
Sbjct: 102 QQGLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAM 159

Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           P    F +    P+ASV +              A+ HLV++AV  L  G+VT++D +G L
Sbjct: 160 PKPSLFVREQKSPSASVTVNLEPGRALDEGQISAVTHLVSSAVAGLPPGNVTLVDQSGHL 219

Query: 217 LT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LT +N   R++    L     ++  ++  I   L   +G  N  + V A+++   ++  E
Sbjct: 220 LTQSNTAGRDLNDAQLKYAADVEARLQRRIEAILGPVVGNSNVHAQVTAQIDFSNKEQTE 279

Query: 276 IVYDPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDRKV------------ 320
             Y P+    +++  S+    +E    + P        N P  ++               
Sbjct: 280 EQYRPNGDPAQAVMRSRQVNENEQVGGAYPGGVPGALSNQPAPANAAPISTPPANQQNGQ 339

Query: 321 --------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372
                       +   T+ + E +NYE++     T  +   ++RLS+AVVVN   L    
Sbjct: 340 QNQQTTTSTASNAGPRTNSRNETTNYEVDRTIRHTKLNVGDIQRLSVAVVVNYKTLPNGK 399

Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDIL 432
                       + +I  +   A G + +RGD++ + +  F      +    ++ F    
Sbjct: 400 PL----PLTAEQMKQIEDLTREAMGYSEKRGDSLNVVNSPFNP---VDETGGELPFWQQQ 452

Query: 433 SRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTG 492
           +     +++A  +L+  ++   L    +R       A+  +   + I +   +  AV   
Sbjct: 453 A-FIDQLMSAGRWLLVLIVAWLLWRKGVRPQLQRR-AEAEKAAREQINARQEVEEAVEVR 510

Query: 493 LMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
           L  ++ +    +NQ           R+ + V  Q   R+  M + +    A ++R+W  +
Sbjct: 511 LSKDEQMQQRRANQ-----------RMGAEVMSQ---RIREMSDNDPRVVALVIRQWMGN 556

Query: 553 EIE 555
           E E
Sbjct: 557 EHE 559


>gi|194469863|ref|ZP_03075847.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|200390157|ref|ZP_03216768.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205358799|ref|ZP_02659200.2| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|194456227|gb|EDX45066.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|199602602|gb|EDZ01148.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205331875|gb|EDZ18639.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
          Length = 579

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 131/542 (24%), Positives = 233/542 (42%), Gaps = 52/542 (9%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 63  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 122

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 123 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 180

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +              A+ HLV++AV  L  G+VT++D +G LLT
Sbjct: 181 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 240

Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  E  
Sbjct: 241 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 300

Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------------HVSDRKV 320
           Y P+    ++   S+    SE      P        N P                + +  
Sbjct: 301 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 360

Query: 321 PLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373
           P   +  N++        + E SNYE++     T  +   +ERLS+AVVVN   L +   
Sbjct: 361 PQTSTSTNSNSAGPRSTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP 420

Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433
                      + +I  +   A G + +RGDT+ + +  F      +    ++ F    S
Sbjct: 421 L----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDDTGGELPFWQQQS 473

Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493
                ++ A  +L+  ++   L   A+R        ++ +   +          AV   L
Sbjct: 474 -FIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRL 531

Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             ++ +    +NQ           R+ + V  Q   R+  M + +    A ++R+W  ++
Sbjct: 532 SKDEQLQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 577

Query: 554 IE 555
            E
Sbjct: 578 HE 579


>gi|197249147|ref|YP_002146054.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197212850|gb|ACH50247.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
          Length = 579

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 131/542 (24%), Positives = 234/542 (43%), Gaps = 52/542 (9%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 63  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 122

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 123 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 180

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +              A+ HLV++AV  L  G+VT++D +G LLT
Sbjct: 181 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 240

Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  E  
Sbjct: 241 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 300

Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------------HVSDRKV 320
           Y P+    ++   S+    SE      P        N P                + +  
Sbjct: 301 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 360

Query: 321 PLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373
           P   +  N++        + E SNYE++     T  +   +ERLS+AVVVN   L +   
Sbjct: 361 PQTSTSTNSNNAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP 420

Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433
                      + +I  +   A G + +RGDT+ + +  F      ++   ++ F    S
Sbjct: 421 L----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDNTGGELPFWQQQS 473

Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493
                ++ A  +L+  ++   L   A+R        ++ +   +          AV   L
Sbjct: 474 -FIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRL 531

Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             ++ +    +NQ           R+ + V  Q   R+  M + +    A ++R+W  ++
Sbjct: 532 SKDEQLQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 577

Query: 554 IE 555
            E
Sbjct: 578 HE 579


>gi|194445262|ref|YP_002041234.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194736346|ref|YP_002115003.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197301177|ref|ZP_02664267.2| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|204931028|ref|ZP_03221854.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|194403925|gb|ACF64147.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194711848|gb|ACF91069.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197288091|gb|EDY27478.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|204320072|gb|EDZ05277.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 579

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 131/542 (24%), Positives = 234/542 (43%), Gaps = 52/542 (9%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 63  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 122

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 123 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 180

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +              A+ HLV++AV  L  G+VT++D +G LLT
Sbjct: 181 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 240

Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  E  
Sbjct: 241 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 300

Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------------HVSDRKV 320
           Y P+    ++   S+    SE      P        N P                + +  
Sbjct: 301 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 360

Query: 321 PLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373
           P   +  N++        + E SNYE++     T  +   +ERLS+AVVVN   L +   
Sbjct: 361 PQTSTSTNSNSAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP 420

Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433
                      + +I  +   A G + +RGDT+ + +  F      ++   ++ F    S
Sbjct: 421 L----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDNTGGELPFWQQQS 473

Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493
                ++ A  +L+  ++   L   A+R        ++ +   +          AV   L
Sbjct: 474 -FIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRL 531

Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             ++ +    +NQ           R+ + V  Q   R+  M + +    A ++R+W  ++
Sbjct: 532 SKDEQLQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 577

Query: 554 IE 555
            E
Sbjct: 578 HE 579


>gi|197264219|ref|ZP_03164293.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197242474|gb|EDY25094.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
          Length = 579

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 131/542 (24%), Positives = 233/542 (42%), Gaps = 52/542 (9%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 63  LWAKAPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 122

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 123 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 180

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +              A+ HLV++AV  L  G+VT++D +G LLT
Sbjct: 181 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 240

Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  E  
Sbjct: 241 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 300

Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------------HVSDRKV 320
           Y P+    ++   S+    SE      P        N P                + +  
Sbjct: 301 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 360

Query: 321 PLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373
           P   +  N++        + E SNYE++     T  +   +ERLS+AVVVN   L +   
Sbjct: 361 PQTSTSTNSNSAGPRSTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP 420

Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433
                      + +I  +   A G + +RGDT+ + +  F      +    ++ F    S
Sbjct: 421 L----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDDTGGELPFWQQQS 473

Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493
                ++ A  +L+  ++   L   A+R        ++ +   +          AV   L
Sbjct: 474 -FIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRL 531

Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             ++ +    +NQ           R+ + V  Q   R+  M + +    A ++R+W  ++
Sbjct: 532 SKDEQLQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 577

Query: 554 IE 555
            E
Sbjct: 578 HE 579


>gi|194451642|ref|YP_002046020.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|195873172|ref|ZP_02696421.2| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|205357978|ref|ZP_03223896.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205359405|ref|ZP_02669752.2| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194409946|gb|ACF70165.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|195633848|gb|EDX52200.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|205328375|gb|EDZ15139.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205336392|gb|EDZ23156.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|323130248|gb|ADX17678.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
          Length = 579

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 131/542 (24%), Positives = 234/542 (43%), Gaps = 52/542 (9%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 63  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 122

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 123 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 180

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +              A+ HLV++AV  L  G+VT++D +G LLT
Sbjct: 181 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 240

Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  E  
Sbjct: 241 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 300

Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------------HVSDRKV 320
           Y P+    ++   S+    SE      P        N P                + +  
Sbjct: 301 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 360

Query: 321 PLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373
           P   +  N++        + E SNYE++     T  +   +ERLS+AVVVN   L +   
Sbjct: 361 PQTSTSTNSNSAGPRSTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP 420

Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433
                      + +I  +   A G + +RGDT+ + +  F      ++   ++ F    S
Sbjct: 421 L----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDNTGGELPFWQQQS 473

Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493
                ++ A  +L+  ++   L   A+R        ++ +   +          AV   L
Sbjct: 474 -FIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRL 531

Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             ++ +    +NQ           R+ + V  Q   R+  M + +    A ++R+W  ++
Sbjct: 532 SKDEQLQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 577

Query: 554 IE 555
            E
Sbjct: 578 HE 579


>gi|76581502|gb|ABA50977.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1710b]
          Length = 627

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 132/525 (25%), Positives = 219/525 (41%), Gaps = 21/525 (4%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 110 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 169

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++SI+ + AARVH+ +P  
Sbjct: 170 LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 227

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++      V    +  A+  +V+++VP++   +VT++D  G LLT 
Sbjct: 228 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 287

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 288 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 347

Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH--------VSDRKVPLPRSLEN 328
           P+   ++S   S+    S     S          N P          S+ +   P +   
Sbjct: 348 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 407

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           +D+K+  +NYE++            ++RLS+AVVVN    T+  GR   Q      LA++
Sbjct: 408 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQV 467

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G + +RGD++ + +  F       +        D++           V    
Sbjct: 468 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 527

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
             L       ALRR                     P       GL   D   L     + 
Sbjct: 528 AALYFMFVRPALRRAFPPPAEPAA---AAVPALDGPDDMLALDGLPSPDKKQLAE-EDEE 583

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                  ++  N Y       R   +   + +  A +++ W   E
Sbjct: 584 HPALLAFENERNRYERNLDYAR--TIARQDPKIVATVVKNWVSDE 626


>gi|322655518|gb|EFY51826.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322683020|gb|EFY79036.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|323204454|gb|EFZ89460.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
          Length = 531

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 129/555 (23%), Positives = 234/555 (42%), Gaps = 52/555 (9%)

Query: 28  VILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPS 87
                + + +A   +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+
Sbjct: 2   AGSATVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPA 61

Query: 88  SMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSIS 147
             V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++ 
Sbjct: 62  DKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLG 119

Query: 148 GIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMG 205
            + +ARVH+ MP    F +    P+ASV +              A+ HLV++AV  L  G
Sbjct: 120 PVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPG 179

Query: 206 DVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVA 264
           +VT++D +G LLT +N   R++    L     ++  I+  I   L+  +G  N  + V A
Sbjct: 180 NVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTA 239

Query: 265 ELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP-------- 313
           +L+   ++  E  Y P+    ++   S+    SE      P        N P        
Sbjct: 240 QLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPI 299

Query: 314 ------HVSDRKVPLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIA 360
                   + +  P   +  N++        + E SNYE++     T  +   +ERLS+A
Sbjct: 300 ATPPTNQQNAQNTPQTSTSTNSNSAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVA 359

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           VVVN   L +              + +I  +   A G + +RGDT+ + +  F      +
Sbjct: 360 VVVNYKTLADGKPL----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVD 412

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
           +   ++ F    S     ++ A  +L+  ++   L   A+R        +      ++ +
Sbjct: 413 NTGGELPFWQQQS-FIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRRVEETKAAQEQAQV 471

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
                           +       ++D     R    R+ + V  Q   R+  M + +  
Sbjct: 472 R------------QETEEAVEVRLSKDEQLQQRRANQRLGAEVMSQ---RIREMSDNDPR 516

Query: 541 RFAKILRKWARSEIE 555
             A ++R+W  ++ E
Sbjct: 517 VVALVIRQWMSNDHE 531


>gi|238755308|ref|ZP_04616651.1| Flagellar M-ring protein [Yersinia ruckeri ATCC 29473]
 gi|238706444|gb|EEP98818.1| Flagellar M-ring protein [Yersinia ruckeri ATCC 29473]
          Length = 574

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 141/550 (25%), Positives = 248/550 (45%), Gaps = 59/550 (10%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
             +  SP Y  LY  L   D   I   L++ NI +R ++NG ++ +P+  V + R+ LA 
Sbjct: 47  MLWAKSPDYRVLYSNLSDRDGGAIVTQLTQLNIPYRFAENGGALLIPADKVHETRLRLAQ 106

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
           QGLP   +  G+EL D+   FG++ F ++I   RALEGE++RTI+++  ++  RVH+ MP
Sbjct: 107 QGLPKGGA-VGFELLDQE-KFGISQFSEQINYQRALEGELSRTIETLGPVLNVRVHLAMP 164

Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
               F +    P+ASV +              AI ++V+++V  L  G+VTV+D TG+LL
Sbjct: 165 KPSLFVREQKSPSASVTLTLQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLL 224

Query: 218 TANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           T ++   R++    L     ++   +  I   LA  +G  N  + V A+++  T++  + 
Sbjct: 225 TQSDSAGRDLNAAQLKFTNEVEVRFQRRIESILAPMVGNGNVHAQVTAQVDFATREQTDE 284

Query: 277 VYDPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDRK-------------- 319
            Y P+ + E+    S+   +SE    +          N P  +                 
Sbjct: 285 EYKPNQRPEQGAVRSQQLSQSEQVGGTPIGGVPGALSNQPSATPAAPIETPAAPGATGAA 344

Query: 320 ----------------VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
                                ++  + +++E +NYE++     T      ++RLS+AVVV
Sbjct: 345 ANTATATPATRNTSAGTAGKNAVPGSSRRDETTNYEVDRTIRHTQQQAGMVQRLSVAVVV 404

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           N   + +  G+          LA+I  +   A G +++RGDT+ + +  F E +  NS  
Sbjct: 405 NYLGIDKKSGKPI--ALSKDQLAQIEALTREAMGFSTQRGDTLNVVNTPFTEAEETNSA- 461

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
             + F    S  F  V+NA  +L+  L+   L    +R L     AKK EV        P
Sbjct: 462 --LPFWKSQS-FFDQVLNAGRYLLILLVAWILWRKLVRPLM----AKKMEVN-------P 507

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
            I++A T         +   SN D  +  +  Q R+++ V  Q   R+  + + +    A
Sbjct: 508 VIAAAKTVAQTAEAAESAKQSN-DELAQRKKSQQRVSAEVQAQ---RIRELADKDPRVVA 563

Query: 544 KILRKWARSE 553
            ++R+W  ++
Sbjct: 564 LVIRQWMSND 573


>gi|300717231|ref|YP_003742034.1| flagellar basal-body M-ring protein [Erwinia billingiae Eb661]
 gi|299063067|emb|CAX60187.1| Flagellar basal-body M-ring protein [Erwinia billingiae Eb661]
          Length = 576

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 129/554 (23%), Positives = 228/554 (41%), Gaps = 59/554 (10%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
              +   P Y  LY  L   D   I   L++ NI ++  D G ++ VP+  V + R+ LA
Sbjct: 44  MALWAKQPEYRVLYNNLSDEDGGAIITQLTQMNIPYQFDDKGGALMVPAEKVHELRLRLA 103

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
            QGLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  +   RVH+ M
Sbjct: 104 QQGLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKNVRVHLAM 161

Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           P    F +    PTASV +           +  AI H+V+++V  L  G+VTV+D  G L
Sbjct: 162 PKPSLFVREQKSPTASVTLTLQPGRALDQGQISAIVHMVSSSVAGLPPGNVTVVDQAGHL 221

Query: 217 LT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LT ++   R++    L     +++  +  I   L   +G  N  + V A+++ + ++  +
Sbjct: 222 LTQSDNAGRDLNDAQLKYATDVENRFQSRIEAILNPIVGTGNVHAQVTAQIDFNAREQTD 281

Query: 276 IVYDPDS----KVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRK------------ 319
             Y P+S    +  RS + S   Q      P        N P  ++              
Sbjct: 282 EKYQPNSDPSTQAVRSRQTSDSEQIGGQY-PGGVPGALSNQPAPANTAPVTTPAANNQNG 340

Query: 320 -------------------VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
                                  ++  +  + +  +NYE++   + T  +  +++RLS+A
Sbjct: 341 QNGQNGQNGNAAAANQGSSASTAKAGPSNTRTDNTTNYEVDRTILHTKMNVGEVQRLSVA 400

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           VVVN     +           D+ L +I  +   A G + +RGD++ + +  F   +  +
Sbjct: 401 VVVNY----KADAAGKPIALTDAQLKQIENLTREAMGYSDKRGDSLNVVNSPFTVTEDTS 456

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
                      + +        LV +V  +L   L    LRR   ++ A           
Sbjct: 457 DDVPFWKQPAFIDQMMELGRWLLVLIVAWILYRKLVRPQLRRKAELEKAAVEAAAVAKQA 516

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
                  AV             S ++D     R  Q R+++ V  Q   R+  M E +  
Sbjct: 517 REESGDDAVAV-----------SLSKDEQDQERKSQHRMSAEVMSQ---RIRDMSENDPR 562

Query: 541 RFAKILRKWARSEI 554
             A ++R+W + E+
Sbjct: 563 VVALVIRQWMKDEL 576


>gi|167813742|ref|ZP_02445422.1| flagellar MS-ring protein [Burkholderia pseudomallei 91]
          Length = 559

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 132/525 (25%), Positives = 219/525 (41%), Gaps = 21/525 (4%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 42  WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 101

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++SI+ + AARVH+ +P  
Sbjct: 102 LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 159

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++      V    +  A+  +V+++VP++   +VT++D  G LLT 
Sbjct: 160 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 219

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 220 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 279

Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH--------VSDRKVPLPRSLEN 328
           P+   ++S   S+    S     S          N P          S+ +   P +   
Sbjct: 280 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 339

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           +D+K+  +NYE++            ++RLS+AVVVN    T+  GR   Q      LA++
Sbjct: 340 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQV 399

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G + +RGD++ + +  F       +        D++           V    
Sbjct: 400 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 459

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
             L       ALRR                     P       GL   D   L     + 
Sbjct: 460 AALYFMFVRPALRRAFPPPAEPAA---AAVPALDGPDDMLALDGLPSPDKKQLAE-EDEE 515

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                  ++  N Y       R   +   + +  A +++ W   E
Sbjct: 516 HPALLAFENERNRYERNLDYAR--TIARQDPKIVATVVKNWVSDE 558


>gi|56384261|gb|AAV85779.1| FliF [Azospirillum brasilense]
          Length = 521

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 155/520 (29%), Positives = 262/520 (50%), Gaps = 12/520 (2%)

Query: 43  VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL 102
           +++P  + LY +L+ ++   I+  L EA + F +   G+ I V +  VG  R+ +AA GL
Sbjct: 4   LSTPEMELLYAELQPTEAAAIAKKLEEAKVPFTVDKTGTKIMVAAEQVGPTRMRMAAAGL 63

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162
           P S  + GYELFDK   FG TSFMQ I  +RALEGE+ART+Q+++G+ +ARVH+V+P   
Sbjct: 64  P-SGGSIGYELFDKGEGFGATSFMQNINHLRALEGEMARTVQTLNGVQSARVHLVLPKRE 122

Query: 163 SFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL--- 217
            F +     TAS+ I+         ++ +AI+HL+AA+VPNLD   ++++D  G LL   
Sbjct: 123 LFARQQNPATASIFIKLRPGAQLSRENIQAIQHLIAASVPNLDPSRISIVDDKGTLLARG 182

Query: 218 TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
           T N+    +L  +     A +  +   I   L   +G    R+ V A+L+ D    +  +
Sbjct: 183 TGNDSADAMLASAEEKKVAYESRVARIIEDLLGRTVGYGKVRAEVSADLDFDRITTQSEI 242

Query: 278 YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSN 337
           +DP+S+V RS +   +A  S    P S VTV+QN+P         P S    ++ EE  N
Sbjct: 243 FDPESQVVRSTQTVTEANESHDRDPLSPVTVDQNLPTAQSGNNAGPISQNKQNRSEETIN 302

Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS-ADQGKIDSYLAEINKIVSAAT 396
           YEI+  +     ++ ++ RLS+AV+V+        G   A Q + +  L  I  +V +A 
Sbjct: 303 YEISRTTKNHVRESGQVRRLSVAVLVDGTYSLPRDGNPAAYQPRPEQELESIKALVRSAV 362

Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456
           G+++ RGDT+ + +M F   +       ++ F+ +       +   +V  +  +L+  L 
Sbjct: 363 GLDAVRGDTLEVINMRFWSPEDDVQKPEEL-FLGMTKDDLFRIAEMVVLGIVAVLIILLV 421

Query: 457 LHAL--RRLHNIDDAKKGEVGG-KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR 513
           +  L  R     D  ++ ++    +  S  P + A  TG +  D +AL+++  D      
Sbjct: 422 IRPLITRAFEKADQQEEDDMDRLLADQSGMPAALAAPTGALAQD-LALEAAQADEELEQM 480

Query: 514 NLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
              +R+   V   S  ++  ++E + E    ILR W   E
Sbjct: 481 IDINRVEGRVRASSLRKVGEIVEKHPEEAVSILRNWLYQE 520


>gi|312962276|ref|ZP_07776768.1| flagellar M-ring protein FliF [Pseudomonas fluorescens WH6]
 gi|311283613|gb|EFQ62202.1| flagellar M-ring protein FliF [Pseudomonas fluorescens WH6]
          Length = 592

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 130/592 (21%), Positives = 242/592 (40%), Gaps = 66/592 (11%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L
Sbjct: 22  LSFLENLSEMTMLRQVGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMETL 81

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + A+I + +  N  ++ V +  V +AR+ LAA G+  S SN G+E+ DK    G + FM+
Sbjct: 82  AAADIAYTVEPNSGALLVKADDVARARMKLAAAGVTPSDSNIGFEILDKDQGLGTSQFME 141

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
                R LEGE+ARTI S++ +  ARVH+ +P    F +   +P+ASV++   +    + 
Sbjct: 142 ATRYRRGLEGELARTISSLNNVKGARVHLAIPKSSVFVRDERKPSASVLVELFSGRSLEP 201

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP L    +TV+D  G LL+  A        GK     + ++  +  
Sbjct: 202 GQVMAIINLVATSVPELSKSQITVVDQKGNLLSDMAENSALTQAGKQFDYSRRMESMLTQ 261

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            ++  L   LG D +++ V A+++    +     ++PD    RS + + + QR+ ++ P+
Sbjct: 262 RVHNILQPILGNDRYKAEVSADVDFSAVESTSEQFNPDQPALRSEQSTSE-QRTASNGPQ 320

Query: 304 SAVTVEQNMPHVSDRKV----------------------------------PLPRSLENT 329
                  N P                                         P+       
Sbjct: 321 GVPGALSNQPPSPASAPQTTGGAAATAGAIQPGQPLLDANGQQIMDPATGQPMLAPYPAD 380

Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL-TEVLGRSADQGKIDSYLAEI 388
            + +   N+E++     T     ++ RLS++VVV+         G           LA  
Sbjct: 381 KRNQSTKNFELDRSISHTKQQQGRVNRLSVSVVVDDQVKVNPADGAVTRAPWSADELARF 440

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALV 444
            ++V  A G ++ RGD++++ +M F   +           Q  F DI+ +          
Sbjct: 441 TRLVQDAVGFDASRGDSVSVINMPFSAERGETIAEPAFYSQPWFWDIVKQ---------- 490

Query: 445 FLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDS 503
            ++G L +  L    LR  L+NI    K ++                 G + ND ++L  
Sbjct: 491 -VLGVLFILVLVFGVLRPVLNNITGNGKKQLAAFGGGDVELGGMGGLDGELANDRVSLGG 549

Query: 504 SNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
               +  S S    +++N+         +  ++  +  R A+++++W  ++ 
Sbjct: 550 PQSILLPSPSEGYDAQLNA---------IKSLVAEDPGRVAQVVKEWINADE 592


>gi|167843852|ref|ZP_02469360.1| flagellar MS-ring protein [Burkholderia pseudomallei B7210]
          Length = 565

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 132/525 (25%), Positives = 219/525 (41%), Gaps = 21/525 (4%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 48  WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 107

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++SI+ + AARVH+ +P  
Sbjct: 108 LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 165

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++      V    +  A+  +V+++VP++   +VT++D  G LLT 
Sbjct: 166 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 225

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 226 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 285

Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH--------VSDRKVPLPRSLEN 328
           P+   ++S   S+    S     S          N P          S+ +   P +   
Sbjct: 286 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 345

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           +D+K+  +NYE++            ++RLS+AVVVN    T+  GR   Q      LA++
Sbjct: 346 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQV 405

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G + +RGD++ + +  F       +        D++           V    
Sbjct: 406 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 465

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
             L       ALRR                     P       GL   D   L     + 
Sbjct: 466 AALYFMFVRPALRRAFPPPAEPAA---AAVPALDGPDDMLALDGLPSPDKKQLAE-EDEE 521

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                  ++  N Y       R   +   + +  A +++ W   E
Sbjct: 522 HPALLAFENERNRYERNLDYAR--TIARQDPKIVATVVKNWVSDE 564


>gi|90418370|ref|ZP_01226282.1| putative flagellar M-ring protein [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90338042|gb|EAS51693.1| putative flagellar M-ring protein [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 563

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 205/558 (36%), Positives = 320/558 (57%), Gaps = 7/558 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           +A+  +  Q   + T+LG  R+  L  V L+ + L     ++++ P  + LY  L+ +DV
Sbjct: 3   LAVGGKAQQLLTNLTALGPRRLGALGLVGLLVVALVGLGSYYLSRPDMETLYSGLDRTDV 62

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            RI  AL+EA I F +   G +I  P S    AR+ LA +GLP  S N+GYELFD + S 
Sbjct: 63  TRIGAALTEAGIPFDVDSKGDAILTPFSQTAPARMLLAEKGLPR-SENAGYELFDNLGSI 121

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQEITRVRALEGEIARTIQ++  + AARVHIV+PD GSFR+   +P+ASV++R  
Sbjct: 122 GLTSFMQEITRVRALEGEIARTIQTLRNVRAARVHIVLPDKGSFRREQQKPSASVVVRTE 181

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL-SIVQAIQH 239
           N + + SA+AIR LVA+A+P++   +VT+L++ G LL + +   +     L  I   +  
Sbjct: 182 NGNDFGSAQAIRSLVASAIPSMTPEEVTILNADGTLLASGDEGVSAAPTKLFGIESVVSK 241

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           +IE +I + LA +LG+ NF+++VVA L+ D +QI E ++DP+S+VERS R  ++  +S  
Sbjct: 242 DIEQSIRRTLAPYLGIGNFQTSVVARLDTDRKQISERIFDPESRVERSTRTIRENNQSAN 301

Query: 300 SQPESAVTVEQNMPHVSDRKVPL---PRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
              E+ V VEQ++  V           +S E T+++EE +NYEIN K+I+TT D Y++ER
Sbjct: 302 RASETPVGVEQDVREVDAAPAGGGGGEQSSEETERREELTNYEINEKTISTTSDGYQVER 361

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           LS+AVVV++ R+ E +G +    +ID+ + EI  +V++A+G ++ RGD I +T++DF+ +
Sbjct: 362 LSVAVVVDRKRVLEAIGENPTDAQIDARIGEIKALVASASGFSADRGDQIEVTAVDFIAS 421

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476
                     S  ++  R   T+INAL  L   +++ + GL    R      A +G    
Sbjct: 422 DDALEPIPAPSLGEMFMRQSGTLINALTILAVAIMLIWFGLKPAVRAIAAMPAAEGTTLA 481

Query: 477 KSILSPPPISSAVTTGLMPN--DNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
                  P        L  +  +N+  DS       +       +N  V      RL  +
Sbjct: 482 ALDDDEMPELDDDARALSESLLENLNYDSDPAGGSGNEIGFLDDLNFNVGNSPRARLERL 541

Query: 535 IEINEERFAKILRKWARS 552
           ++ NEE  A ++++W   
Sbjct: 542 LDHNEEHAATVMKQWLNQ 559


>gi|227355980|ref|ZP_03840372.1| flagellar M-ring protein [Proteus mirabilis ATCC 29906]
 gi|227163968|gb|EEI48870.1| flagellar M-ring protein [Proteus mirabilis ATCC 29906]
          Length = 573

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 129/548 (23%), Positives = 243/548 (44%), Gaps = 56/548 (10%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            ++ SP Y  LY  L   D   I   L++ N+ +R+S NGS+I VP + V + R+ LA  
Sbjct: 46  LWLQSPDYKVLYSNLSDKDGGEIVTQLTQMNVPYRLSQNGSAIMVPDNQVHELRLKLAQA 105

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   + +G+EL DK   FG++ F ++I   RALEGE+ARTI+++  +  ARVH+ +P 
Sbjct: 106 GLPKGGA-AGFELLDKE-KFGISQFSEQINYQRALEGELARTIETLGPVQNARVHLALPK 163

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +  +           AI H+VA++V  +   +VT++D +GKLLT
Sbjct: 164 PSLFVREQKSPSASVTVGLLQGRALDEGQINAIVHIVASSVAGMPDSNVTIVDQSGKLLT 223

Query: 219 ANEM-ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
             +   R++    L  VQ ++   +  I   L   +G  N  + V A+++    +     
Sbjct: 224 QPDALGRDLNSIQLKYVQELESRYQQRIETLLGPIVGRGNVHAQVTAQVDFSHTEETAEE 283

Query: 278 YDPDSKVERSIRLSKDAQRSETSQP---ESAVTVEQNMPHVSDRKV-------------- 320
           Y P+    ++   SK   +SE +             N P    +                
Sbjct: 284 YKPNQPPNQAAVRSKQVSQSEQNGGMLAGGVPGALSNQPVAPPQAPIEKAKDTAADEKAT 343

Query: 321 ------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTE---- 370
                  + R+  +  + +E +NYE++ +          +ERLS+AV+VN   + +    
Sbjct: 344 STNANRSMTRNPNSNSRLDETTNYEVDRRIRHVKRPVGNIERLSVAVIVNYKTVEDKKKA 403

Query: 371 -----VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425
                 +  +      D  L +I  +V  A G +  RGD++++ +  F + +      + 
Sbjct: 404 TEGEEPIVENKQVPLTDEQLQQIESLVREAMGYSQERGDSLSVVNSQFNDTE---EPVIS 460

Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485
           V   +   +  A  ++   +L+  ++   L    ++    ++  ++ EV  +  +     
Sbjct: 461 VPMWEN-PQILAKALDLGRWLLLVIIAWILWRKLVKP--QLEKRREAEVAAQKAI----- 512

Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545
              + T L   D++  + +  D  S  +  + R+++ +  Q   R+  M E +    A +
Sbjct: 513 ---LKTKLEVTDDV--NEAELDEESRRKQARQRVSAELQSQ---RIREMAEKDPRVVAMV 564

Query: 546 LRKWARSE 553
           +R+W   E
Sbjct: 565 IRQWMSKE 572


>gi|197285489|ref|YP_002151361.1| flagellar MS-ring protein [Proteus mirabilis HI4320]
 gi|194682976|emb|CAR43401.1| flagellar M-ring protein [Proteus mirabilis HI4320]
          Length = 573

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 129/548 (23%), Positives = 243/548 (44%), Gaps = 56/548 (10%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            ++ SP Y  LY  L   D   I   L++ N+ +R+S NGS+I VP + V + R+ LA  
Sbjct: 46  LWLQSPDYKVLYSNLSDKDGGEIVTQLTQMNVPYRLSQNGSAIMVPDNQVHELRLKLAQA 105

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   + +G+EL DK   FG++ F ++I   RALEGE+ARTI+++  +  ARVH+ +P 
Sbjct: 106 GLPKGGA-AGFELLDKE-KFGISQFSEQINYQRALEGELARTIETLGPVQNARVHLALPK 163

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +  +           AI H+VA++V  +   +VT++D +GKLLT
Sbjct: 164 PSLFVREQKSPSASVTVGLLQGRALDEGQINAIVHIVASSVAGMPDSNVTIVDQSGKLLT 223

Query: 219 ANEM-ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
             +   R++    L  VQ ++   +  I   L   +G  N  + V A+++    +     
Sbjct: 224 QPDALGRDLNSIQLKYVQELESRYQQRIETLLGPIVGRGNVHAQVTAQVDFSHTEETAEE 283

Query: 278 YDPDSKVERSIRLSKDAQRSETSQP---ESAVTVEQNMPHVSDRKV-------------- 320
           Y P+    ++   SK   +SE +             N P    +                
Sbjct: 284 YKPNQPPNQAAVRSKQVSQSEQNGGMLAGGVPGALSNQPVAPPQAPIEKAKDTTADEKTT 343

Query: 321 ------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTE---- 370
                  + R+  +  + +E +NYE++ +          +ERLS+AV+VN   + +    
Sbjct: 344 STNANRSMTRNPNSNSRLDETTNYEVDRRIRHVKRPVGNIERLSVAVIVNYKTVEDKKKA 403

Query: 371 -----VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425
                 +  +      D  L +I  +V  A G +  RGD++++ +  F + +      + 
Sbjct: 404 TEGEEPIVENKQVPLTDEQLQQIESLVREAMGYSQERGDSLSVVNSQFNDTE---EPVIS 460

Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485
           V   +   +  A  ++   +L+  ++   L    ++    ++  ++ EV  +  +     
Sbjct: 461 VPVWEN-PQILAKALDLGRWLLLVIIAWILWRKLVKP--QLEKRREAEVAAQKAI----- 512

Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545
              + T L   D++  + +  D  S  +  + R+++ +  Q   R+  M E +    A +
Sbjct: 513 ---LKTKLEVTDDV--NEAELDEESRRKQARQRVSAELQSQ---RIREMAEKDPRVVAMV 564

Query: 546 LRKWARSE 553
           +R+W   E
Sbjct: 565 IRQWMSKE 572


>gi|83591884|ref|YP_425636.1| flagellar MS-ring protein [Rhodospirillum rubrum ATCC 11170]
 gi|83574798|gb|ABC21349.1| Flagellar FliF M-ring protein [Rhodospirillum rubrum ATCC 11170]
          Length = 551

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 148/553 (26%), Positives = 256/553 (46%), Gaps = 13/553 (2%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
            F ++  +LG  R+  LA V +  I   +     ++    + LY  L  +D  +I   L 
Sbjct: 3   SFVQTMRNLGPVRLAALAGVAIALIGFVIYVASRLSGTSMELLYGDLAPADAKQIIAQLE 62

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
           E NI ++++++G S+ VPS  V K R+ +A   LP S +  GYE+FD  ++ G T F Q 
Sbjct: 63  ERNIPYQMANDGRSVLVPSDQVLKLRVQMAESALP-SGATVGYEIFDSASALGSTQFTQN 121

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY-KS 187
           I  VRALEGE+ART+++I G+  ARVH+V+P    F +    P+ASV++      +  + 
Sbjct: 122 INMVRALEGELARTVRTIQGVEGARVHLVLPKREPFTRDQVAPSASVVLLMKGRRLQPEQ 181

Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEMNI 245
             A+++LVAAAVP +  G V+++D  G LLT    E           + +A +  +  +I
Sbjct: 182 VVAVQNLVAAAVPGMKPGQVSIIDERGTLLTRGMGEEGALIAQNQDELRKAEERRLAQSI 241

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305
            + L   +GV   R+ VVA+++ +        +DP+ +V RS     +  +S  S   S 
Sbjct: 242 EQLLERTIGVGKVRAEVVADMDFNRIVTSRESFDPNGQVVRSTTTVDEQNKS--SDAVSN 299

Query: 306 VTVEQNMPHVS-DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
           V+V+QN+P          P S  + ++ EE  NYEI         +   ++RLS+AV+V+
Sbjct: 300 VSVQQNLPEAQFAGNGGAPTSQTSENRTEETVNYEITKIVTNEVKEAGVVKRLSVAVMVD 359

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424
               T   G +  Q + D  + +I  +V +A G +  RGD I + +M F++         
Sbjct: 360 GTSTTNDAGVTTWQPRSDDEMQKITSLVRSAMGYDQARGDQIEVVNMQFIDPGALFDDAA 419

Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP- 483
              F+         +   L   V  +L+  L +  L +    +     + GG  +L+   
Sbjct: 420 AWEFLGFTKAEVMKMAEGLGVAVVAILIILLVVRPLVQRAFENLPSGADQGGAGLLTAEM 479

Query: 484 ---PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
              P  +    G +P   + +     D  +       ++   V   S  ++  +++ + E
Sbjct: 480 QSHPQLTGPGGGSIPAGMLGMPDEMDD--AEELIDIDKVEGRVKASSLRKIGEIVDKHPE 537

Query: 541 RFAKILRKWARSE 553
               I+R W   E
Sbjct: 538 EALSIIRNWLYQE 550


>gi|2832233|gb|AAC01568.1| M-ring [Brucella abortus]
          Length = 540

 Score =  429 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 202/512 (39%), Positives = 303/512 (59%), Gaps = 6/512 (1%)

Query: 4   LDQLLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
             QL++  K     LG  +++ L  V    +   +    ++  P Y+ LYV L   DVNR
Sbjct: 10  FQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVNR 69

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           + +AL EA I F +   GSSI VP      AR++LA +GLP+S+ N+GYELFD + S GL
Sbjct: 70  MGLALGEAGIPFDVKSYGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGL 128

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           TSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA   
Sbjct: 129 TSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGG 188

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEI 241
              +SA++IR LVAAAVP+LD   VTVLD+ G LL +A E        + S+ Q +   +
Sbjct: 189 FSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASHV 248

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           + +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  ++
Sbjct: 249 DDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNNR 308

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
            ++A  VEQN+P    +      S E TD++EE +NYE+N+K+++T  D Y ++RLSIAV
Sbjct: 309 NDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIAV 368

Query: 362 VVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           V+++ RL +  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL+    +
Sbjct: 369 VIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGAD 428

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA--KKGEVGGKS 478
              V   + D L R   +  NAL  L    L+ + GL  L R  N+  A  +        
Sbjct: 429 MEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAGE 488

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFS 510
           + +P  I  A + G      I   ++  D   
Sbjct: 489 VATPNFIGGAESVGEGVQAVIGGPAAYADQMK 520


>gi|292492381|ref|YP_003527820.1| flagellar M-ring protein FliF [Nitrosococcus halophilus Nc4]
 gi|291580976|gb|ADE15433.1| flagellar M-ring protein FliF [Nitrosococcus halophilus Nc4]
          Length = 566

 Score =  429 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 136/559 (24%), Positives = 249/559 (44%), Gaps = 42/559 (7%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
           +   L   + + L  +I V + L +    +  SP+Y  LY  +   +   I  AL +ANI
Sbjct: 31  NIARLSPLKQVGLLLMIAVSVALGVGIFLWSQSPNYQILYGAVSGKEKGEIVEALQKANI 90

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
           D+++ +   ++ VP+S V + R+ LA +GLP S+  +G+EL ++   FG++ F+++    
Sbjct: 91  DYQLDEATGALMVPASQVHEVRLQLAMEGLPRSAG-TGFELLEQNPGFGVSEFLEKARYQ 149

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEA 190
           R LEGE+ARTI +++ + +ARVH+ +P    F +    P+ASV++      +       A
Sbjct: 150 RVLEGELARTISTLNNVKSARVHLALPKRSVFIRDRKVPSASVVLDLYPGRMLAPGQVAA 209

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEMNINKA 248
           I HLVA+++P L+   VTV++  G LLT  E  + +          + I+ E    I + 
Sbjct: 210 ITHLVASSIPELESAGVTVVNQEGDLLTQPERSQTLEMTASQFEYTRRIEEEYGHRIQRI 269

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308
           LA  +G D  R+ VVAE++    +  +  Y+P+ +  RS + +++ +      P      
Sbjct: 270 LAPLVGADKVRAQVVAEVDFTVTEQTQERYEPEKRALRSEQTAEEERIG-GRLPGGIPGA 328

Query: 309 EQNMPH----------VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
             N P            ++     P    ++       NYE++            + RLS
Sbjct: 329 LSNQPPDEAQVPETLNGANEGESQPSEPPSSRSLRATRNYELDRTISHIRLAPGDIRRLS 388

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           +AV+V++  +T+  G  +   +    L  I  +V  A G N  RGDTI + +  F+ N+ 
Sbjct: 389 VAVLVDEKLVTDAEGNVSTSPRSPQELEHITGLVKEAVGFNPDRGDTINVINAPFVPNEE 448

Query: 419 FNSGTV----QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
                     Q  +  +  +    ++  L  L+G L  TF      RRL  + +      
Sbjct: 449 LEPLPEPPFWQQEWFWVAVKQGGGILAVLFLLLGVLRPTF------RRLTTVPEP----- 497

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
              ++ S P  S     GL  +      ++     S   +L++ +          R+  M
Sbjct: 498 --VTVPSLPKGSDEDKEGLKEDRLTLSSNAPTLQLSGPDSLEANLE---------RVRKM 546

Query: 535 IEINEERFAKILRKWARSE 553
              + ER A++++ W   +
Sbjct: 547 AADDSERVAQVVKNWVSGD 565


>gi|311279120|ref|YP_003941351.1| flagellar M-ring protein FliF [Enterobacter cloacae SCF1]
 gi|308748315|gb|ADO48067.1| flagellar M-ring protein FliF [Enterobacter cloacae SCF1]
          Length = 556

 Score =  429 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 133/537 (24%), Positives = 233/537 (43%), Gaps = 48/537 (8%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  SP Y  L+  L   D   I   L + NI +R +D+G +I VP+  V + R+ LA QG
Sbjct: 45  WAKSPDYRTLFSNLSDQDGGAIVTQLQQMNIPYRFADSGGAIEVPADKVHELRLRLAQQG 104

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  +  ARVH+ MP  
Sbjct: 105 LPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKGARVHLAMPKP 162

Query: 162 GSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV +              A+ HLV++AV  L  G+VT++D  G LLT 
Sbjct: 163 SLFVREQKLPSASVTLNLEPGRALDEGQIAAVVHLVSSAVAGLPPGNVTLVDQAGHLLTQ 222

Query: 220 NEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
           +    R++    L     ++  I+  I   L+  +G  N  + V A+LN D ++  E  Y
Sbjct: 223 SNTGARDLNDAQLKYASDVEGRIQRRIETILSPIVGNGNVHAQVTAQLNFDNKEQTEEQY 282

Query: 279 DPDSKVERSIRLSKDAQRSE--------------TSQPESAVTVEQNMPHVSDRKVPLP- 323
            P+    +++  S+    SE              ++ P  A     + P  +        
Sbjct: 283 RPNGDSSQAVLRSRQVNESEQIGSPYPGGVPGALSNSPAPAPNAPISTPPANQNNGQQQT 342

Query: 324 -----RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ 378
                 S      + E SNYE++     T  +   ++RLS+AVVVN   L +        
Sbjct: 343 TSTTNASGPRNTSRNETSNYEVDRTIRHTKTNIGDVQRLSVAVVVNYKNLPDGKPL---- 398

Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFAT 438
                 + +I  +   A G + +RGDT+ + +  F      +    ++ F    S     
Sbjct: 399 PLTADQMKQIEDLTREAMGYSDKRGDTLNVVNSQF---SAGDETGGELPFWKQQS-FIDQ 454

Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498
           +++A  +L+  ++   L   A+R        ++ +V  +       ++ AV   L  ++ 
Sbjct: 455 LMSAGRWLLVLIVAWLLWRKAIRPQLARRQ-EEAKVAQEEARVQREMADAVEVRLSKDEQ 513

Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
                         R    R+++ V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 514 -----------HQQRRTNQRLSAEVMSQ---RIREMSDNDPRVVALVIRQWMSNDHE 556


>gi|205360218|ref|ZP_02681717.2| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|205350665|gb|EDZ37296.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 579

 Score =  429 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 131/542 (24%), Positives = 235/542 (43%), Gaps = 52/542 (9%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 63  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 122

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 123 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 180

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +              A+ HLV++AV +L  G+VT++D +G LLT
Sbjct: 181 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVASLPPGNVTLVDQSGHLLT 240

Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  E  
Sbjct: 241 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 300

Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------------HVSDRKV 320
           Y P+    ++   S+    SE      P        N P                + +  
Sbjct: 301 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 360

Query: 321 PLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373
           P   +  N++        + E SNYE++     T  +   +ERLS+AVVVN   L +   
Sbjct: 361 PQTSTSTNSNSAGPRSTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP 420

Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433
                      + +I  +   A G + +RGDT+ + +  F      ++   ++ F    S
Sbjct: 421 L----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDNTGGELPFWQQQS 473

Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493
                ++ A  +L+  ++   L   A+R        ++ +   +          AV   L
Sbjct: 474 -FIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRL 531

Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             ++ +    +NQ           R+ + V  Q   R+  M + +    A ++R+W  ++
Sbjct: 532 SKDEQLQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 577

Query: 554 IE 555
            E
Sbjct: 578 HE 579


>gi|56413118|ref|YP_150193.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197362044|ref|YP_002141681.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|56127375|gb|AAV76881.1| flagellar basal-body M-ring protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197093521|emb|CAR58982.1| flagellar basal-body M-ring protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 563

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 131/542 (24%), Positives = 233/542 (42%), Gaps = 52/542 (9%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 47  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 106

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 107 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 164

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +              A+ HLV++AV  L  G+VT++D +G LLT
Sbjct: 165 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 224

Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  E  
Sbjct: 225 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 284

Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------------HVSDRKV 320
           Y P+    ++   S+    SE      P        N P                + +  
Sbjct: 285 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 344

Query: 321 PLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373
           P   +  N++        + E SNYE++     T  +   +ERLS+AVVVN   L +   
Sbjct: 345 PQTSTSTNSNNAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP 404

Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433
                      + +I  +   A G + +RGDT+ + +  F      +    ++ F    S
Sbjct: 405 L----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDDTGGELPFWQQQS 457

Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493
                ++ A  +L+  ++   L   A+R        ++ +   +          AV   L
Sbjct: 458 -FIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRL 515

Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             ++ +    +NQ           R+ + V  Q   R+  M + +    A ++R+W  ++
Sbjct: 516 SKDEQLQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 561

Query: 554 IE 555
            E
Sbjct: 562 HE 563


>gi|330961220|gb|EGH61480.1| flagellar MS-ring protein [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 596

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 129/593 (21%), Positives = 240/593 (40%), Gaps = 66/593 (11%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L
Sbjct: 24  LSFLENLSEMTMLRQVGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGLDSKQIMDTL 83

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + ANI + +  N  ++ V S  V +ARI LA  G+  + +N G+E+ DK    G + FM+
Sbjct: 84  TAANIVYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
                R LEGE+ARTI +++ +  ARVH+ +P    F +   +P+ASV++        + 
Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP L    +TV+D  G LL+  A   E  + GK     + ++  +  
Sbjct: 204 SQVLAIINLVATSVPELSKSQITVVDQKGTLLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA--------- 294
            +   L   LG D +++ V A ++    +     ++PD    RS +   +          
Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNEQRSSSSSSGG 323

Query: 295 -QRSETSQPESAVTVEQ----------------------NMPHVSDRKVPLPRSL--ENT 329
              + ++QP    T  Q                      N   + D     P        
Sbjct: 324 VPGALSNQPPGPATAPQTAGGGAAGAAGPIAAGQPLLDANGQQIMDPATGQPALAPFPAD 383

Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK-GRLTEVLGRSADQGKIDSYLAEI 388
            + +   N+E++     T     +L RLS+AVVV+   +     G  +      + LA  
Sbjct: 384 KRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEISRAPWSATDLARF 443

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALV 444
            ++V  A G ++ RGD++++ ++ F   +           Q  F DI+ +          
Sbjct: 444 TRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYSQPWFWDIVKQ---------- 493

Query: 445 FLVGTLLVTFLGLHALRRLHN--IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALD 502
             VG + +  L    LR + N   +   K ++                 G + ND ++L 
Sbjct: 494 -AVGVIFILILVFGVLRPVLNNITNGKSKQQLAAFGGGDAELGGMGGLDGELSNDRVSLG 552

Query: 503 SSNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
                +  S +    +++N+         +  ++  +  R A+++++W  ++ 
Sbjct: 553 GPQSILLPSPTEGYDAQLNA---------IKSLVAEDPGRVAQVVKEWINTDE 596


>gi|320085412|emb|CBY95193.1| Flagellar M-ring protein [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 560

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 131/542 (24%), Positives = 233/542 (42%), Gaps = 52/542 (9%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 44  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 103

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 104 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 161

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +              A+ HLV++AV  L  G+VT++D +G LLT
Sbjct: 162 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 221

Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  E  
Sbjct: 222 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 281

Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------------HVSDRKV 320
           Y P+    ++   S+    SE      P        N P                + +  
Sbjct: 282 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 341

Query: 321 PLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373
           P   +  N++        + E SNYE++     T  +   +ERLS+AVVVN   L +   
Sbjct: 342 PQTSTSNNSNNAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP 401

Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433
                      + +I  +   A G + +RGDT+ + +  F      +    ++ F    S
Sbjct: 402 L----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDDTGGELPFWQQQS 454

Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493
                ++ A  +L+  ++   L   A+R        ++ +   +          AV   L
Sbjct: 455 -FIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRL 512

Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             ++ +    +NQ           R+ + V  Q   R+  M + +    A ++R+W  ++
Sbjct: 513 SKDEQLQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 558

Query: 554 IE 555
            E
Sbjct: 559 HE 560


>gi|167909065|ref|ZP_02496156.1| flagellar MS-ring protein [Burkholderia pseudomallei 112]
          Length = 573

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 132/525 (25%), Positives = 219/525 (41%), Gaps = 21/525 (4%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 56  WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 115

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++SI+ + AARVH+ +P  
Sbjct: 116 LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 173

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++      V    +  A+  +V+++VP++   +VT++D  G LLT 
Sbjct: 174 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 233

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 234 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 293

Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH--------VSDRKVPLPRSLEN 328
           P+   ++S   S+    S     S          N P          S+ +   P +   
Sbjct: 294 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 353

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           +D+K+  +NYE++            ++RLS+AVVVN    T+  GR   Q      LA++
Sbjct: 354 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQV 413

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G + +RGD++ + +  F       +        D++           V    
Sbjct: 414 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 473

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
             L       ALRR                     P       GL   D   L     + 
Sbjct: 474 AALYFMFVRPALRRAFPPPAEPAA---AAVPALDGPDDMLALDGLPSPDKKQLAE-EDEE 529

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                  ++  N Y       R   +   + +  A +++ W   E
Sbjct: 530 HPALLAFENERNRYERNLDYAR--TIARQDPKIVATVVKNWVSDE 572


>gi|224826633|ref|ZP_03699734.1| flagellar M-ring protein FliF [Lutiella nitroferrum 2002]
 gi|224601234|gb|EEG07416.1| flagellar M-ring protein FliF [Lutiella nitroferrum 2002]
          Length = 576

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 133/573 (23%), Positives = 241/573 (42%), Gaps = 35/573 (6%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           ++ +      +L   + ++L + +     + +       +P Y  L+  L   D  +I+ 
Sbjct: 15  RVNEASDRFKALPNNKKILLFAALAAVFSVIVGLLILNRTPDYKVLFANLADRDGGQITA 74

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
           AL + N+ ++I   G  ISVPS  V   R+ LAAQGLP +    G+EL D    FG++ F
Sbjct: 75  ALQQMNVPYQI-GGGGVISVPSDKVYDVRLKLAAQGLPKAGG-VGFELMD-NQKFGISQF 131

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
            +++   RA+EGE+ARTI++I  + +ARVHI +P    F +   +PTASVM+      V 
Sbjct: 132 AEQVNYQRAIEGELARTIEAIGAVESARVHIAIPKQSVFVRDQQQPTASVMLNLYPGRVL 191

Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQAIQHE 240
                  I HLV+++VPNL   +VTV+D  G LL++     N  G   + L  V  I+ +
Sbjct: 192 DGGQISGILHLVSSSVPNLSARNVTVVDQDGNLLSSQSDVNNAAGLDQRQLGYVHQIESD 251

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQRS 297
               I   L    G  N R+ V A ++    +     + P+S    S   S+   +   S
Sbjct: 252 FVKRIEGILEPIFGKGNVRAQVTANVDFSEVEQTSETFRPNSTPNPSATRSQQIVEKLGS 311

Query: 298 ETSQPESAVTVEQNMPHVSDRKV---------------PLPRSLENTDKKEEQSNYEINT 342
            ++ P        N P  +                     P       +++  +NYE++ 
Sbjct: 312 GSNLPGGVPGALSNQPPSAASAPLTLPPGAAPGTATLSGQPLGQNGALERQLITNYEVDK 371

Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402
               T      L+RLS AVVVN   + +  G           + +IN +V    G N+ R
Sbjct: 372 TIQHTKLPKGVLKRLSAAVVVNYRLMPDRNGEVKPTPLTAQEIQQINNLVRETMGYNTER 431

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           GDT+ + +  F  N      ++Q   +D +S +   ++  ++  +  L + F  +  + R
Sbjct: 432 GDTLNVVNAAFAGNA--PPASLQEKVVDYVSSNATDLVKYVLLAIAVLYLLFGVVRPIVR 489

Query: 463 -LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521
            +       KG+ G     +       +       +  A      ++       +  +++
Sbjct: 490 DVLKPAKGDKGQPGAAGEEAGGVPGRLLAVAREEGEAGAAAVEEANLDPRELQRRQYMSN 549

Query: 522 YVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
             +         +++ +    A+I+++W  S+ 
Sbjct: 550 LEAA------RELVKADPRMAAQIIKEWISSDE 576


>gi|327394264|dbj|BAK11686.1| flagellar M-ring protein FliF [Pantoea ananatis AJ13355]
          Length = 572

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 133/548 (24%), Positives = 234/548 (42%), Gaps = 56/548 (10%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P+Y  L+  L   D   I   L++ N+ +R +DNG ++ VP   V + R+ LA Q
Sbjct: 47  LWAKTPNYSVLFSNLSNEDGGAIVTQLTQMNVPYRFADNGGALMVPEDKVHELRLRLAEQ 106

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP    N G+EL DK   FG++ F +++   RALEGE+ARTI+S+  +  ARVH+ MP 
Sbjct: 107 GLPKGG-NVGFELLDKE-KFGISQFSEQVNYQRALEGELARTIESLGPVKTARVHLAMPK 164

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +             +AI H+V+++V  L  G+VTV+D +G LLT
Sbjct: 165 PTLFVREQKAPSASVTLTLQPGRALDEGQIQAITHMVSSSVAGLPPGNVTVVDQSGHLLT 224

Query: 219 ANEM-ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            ++   R++    L     ++   +  I   L   LG  N  + V A++N DT +  +  
Sbjct: 225 RSDAVGRDLNDAQLKYAAEVEARYQQRIEAILNPILGQGNVHAQVTAQINFDTSEQTDEK 284

Query: 278 YDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVSDRK--------------- 319
           Y P+   + +   S+    SE S    P        N P  ++                 
Sbjct: 285 YQPNGDPKNASIRSQQTSTSEQSGSPYPGGVPGALSNQPAPANTAPVNAPNTNAANGQNA 344

Query: 320 -------------VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
                             S+    ++++  NYE++     T  +   ++RLS+AVVVN  
Sbjct: 345 NGQNNAANGQRTSTASASSVPTNSRRDDTVNYELDRTIRHTKMNVGDVQRLSVAVVVNYR 404

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
              +    + +    +  L +I  +   A G + +RGD++ + +  F   +       ++
Sbjct: 405 EDDKGKALALN----EQQLKQIEDLTREAMGYSQQRGDSVNVVNSQFNTTE---PTVSEL 457

Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486
            F    S  F  +I+A  +L+  L+   L    +R            +  K        +
Sbjct: 458 PFWQQQS-FFDQLISAGKWLLVALVAFILYRKTVRPHV---------LRKKEAEKAAAEA 507

Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546
            A       +        ++D     R   +R+++ V  Q   R+  M E +    A ++
Sbjct: 508 MAARAAQQNDQEAYSVQLSKDEMEQERKTNNRMSAEVMSQ---RIRDMSENDPRVVALVI 564

Query: 547 RKWARSEI 554
           R+W  +E+
Sbjct: 565 REWMGNEL 572


>gi|207856518|ref|YP_002243169.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|206708321|emb|CAR32624.1| flagellar basal-body M-ring protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
          Length = 560

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 130/542 (23%), Positives = 233/542 (42%), Gaps = 52/542 (9%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 44  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 103

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 104 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 161

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +              A+ HLV++AV  L  G+VT++D +G LLT
Sbjct: 162 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 221

Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  E  
Sbjct: 222 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 281

Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------------HVSDRKV 320
           Y P+    ++   S+    SE      P        N P                + +  
Sbjct: 282 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 341

Query: 321 PLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373
           P   +  N++        + E SNYE++     T  +   +ERLS+AVVVN   L +   
Sbjct: 342 PQTSTSTNSNSAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP 401

Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433
                      + +I  +   A G + +RGDT+ + +  F      ++   ++ F     
Sbjct: 402 L----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDNTGGELPFWQQ-Q 453

Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493
                ++ A  +L+  ++   L   A+R        ++ +   +          AV   L
Sbjct: 454 FFIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRL 512

Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             ++ +    +NQ           R+ + V  Q   R+  M + +    A ++R+W  ++
Sbjct: 513 SKDEQLQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 558

Query: 554 IE 555
            E
Sbjct: 559 HE 560


>gi|238912458|ref|ZP_04656295.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 560

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 131/542 (24%), Positives = 233/542 (42%), Gaps = 52/542 (9%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 44  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 103

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 104 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 161

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +              A+ HLV++AV  L  G+VT++D +G LLT
Sbjct: 162 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 221

Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  E  
Sbjct: 222 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 281

Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------------HVSDRKV 320
           Y P+    ++   S+    SE      P        N P                + +  
Sbjct: 282 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 341

Query: 321 PLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373
           P   +  N++        + E SNYE++     T  +   +ERLS+AVVVN   L +   
Sbjct: 342 PQTSTSTNSNNAGPRSTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP 401

Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433
                      + +I  +   A G + +RGDT+ + +  F      +    ++ F    S
Sbjct: 402 L----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDDTGGELPFWQQQS 454

Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493
                ++ A  +L+  ++   L   A+R        ++ +   +          AV   L
Sbjct: 455 -FIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRL 512

Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             ++ +    +NQ           R+ + V  Q   R+  M + +    A ++R+W  ++
Sbjct: 513 SKDEQLQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 558

Query: 554 IE 555
            E
Sbjct: 559 HE 560


>gi|167617536|ref|ZP_02386167.1| flagellar MS-ring protein [Burkholderia thailandensis Bt4]
          Length = 594

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 135/525 (25%), Positives = 221/525 (42%), Gaps = 22/525 (4%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 78  WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 137

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++S++ + AARVH+ +P  
Sbjct: 138 LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTVESVNAVRAARVHLAIPKP 195

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++      V    +  AI  LV+++VP++   +VT++D  G LLT 
Sbjct: 196 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAITRLVSSSVPDMPAKNVTIVDQDGNLLTQ 255

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 256 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYA 315

Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH--------VSDRKVPLPRSLEN 328
           P+   ++S   S+    S     S          N P          S+ +   P +   
Sbjct: 316 PNGTPQQSAIRSQQTSTSTELAQSGTSGVPGALSNTPPQPASAPIVASNGQPAAPAATPV 375

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           +D+K+  +NYE++            ++RLS+AVVVN    T+  GR   Q      LA++
Sbjct: 376 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLTADKLAQV 435

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G + +RGD++ + +  F       +        D++           V    
Sbjct: 436 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 495

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
             L       ALRR           V         P  +    GL   D   L     + 
Sbjct: 496 AALYFMFVRPALRRAFPPPAEPAAAVPALDG----PDDALALDGLPSPDKKQLAE-EDEE 550

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                  +S  N Y       R   +   + +  A +++ W   E
Sbjct: 551 HPALLAFESEKNRYERNLDYAR--TIARQDPKIVATVVKNWVSDE 593


>gi|224583532|ref|YP_002637330.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224468059|gb|ACN45889.1| flagellar M-ring protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 560

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 131/542 (24%), Positives = 234/542 (43%), Gaps = 52/542 (9%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 44  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 103

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 104 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 161

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +              A+ HLV++AV  L  G+VT++D +G LLT
Sbjct: 162 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 221

Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  E  
Sbjct: 222 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 281

Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------------HVSDRKV 320
           Y P+    ++   S+    SE      P        N P                + +  
Sbjct: 282 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 341

Query: 321 PLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373
           P   +  N++        + E SNYE++     T  +   +ERLS+AVVVN   L +   
Sbjct: 342 PQTSTSTNSNSAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP 401

Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433
                      + +I  +   A G + +RGDT+ + +  F      ++   ++ F    S
Sbjct: 402 L----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDNTGGELPFWQQQS 454

Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493
                ++ A  +L+  ++   L   A+R        ++ +   +          AV   L
Sbjct: 455 -FIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRL 512

Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             ++ +    +NQ           R+ + V  Q   R+  M + +    A ++R+W  ++
Sbjct: 513 SKDEQLQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 558

Query: 554 IE 555
            E
Sbjct: 559 HE 560


>gi|16765307|ref|NP_460922.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|120326|sp|P15928|FLIF_SALTY RecName: Full=Flagellar M-ring protein
 gi|154023|gb|AAA27096.1| fliF flagellar M-protein precursor [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|16420504|gb|AAL20881.1| basal-body MS (membrane and supramembrane)-ring and collar protein
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|261247135|emb|CBG24958.1| flagellar basal-body M-ring protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267993958|gb|ACY88843.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301158483|emb|CBW17993.1| flagellar basal-body M-ring protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312912959|dbj|BAJ36933.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|332988858|gb|AEF07841.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 560

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 131/542 (24%), Positives = 234/542 (43%), Gaps = 52/542 (9%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 44  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 103

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 104 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 161

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +              A+ HLV++AV  L  G+VT++D +G LLT
Sbjct: 162 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 221

Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  E  
Sbjct: 222 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 281

Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------------HVSDRKV 320
           Y P+    ++   S+    SE      P        N P                + +  
Sbjct: 282 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 341

Query: 321 PLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373
           P   +  N++        + E SNYE++     T  +   +ERLS+AVVVN   L +   
Sbjct: 342 PQTSTSTNSNSAGPRSTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP 401

Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433
                      + +I  +   A G + +RGDT+ + +  F      ++   ++ F    S
Sbjct: 402 L----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDNTGGELPFWQQQS 454

Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493
                ++ A  +L+  ++   L   A+R        ++ +   +          AV   L
Sbjct: 455 -FIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRL 512

Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             ++ +    +NQ           R+ + V  Q   R+  M + +    A ++R+W  ++
Sbjct: 513 SKDEQLQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 558

Query: 554 IE 555
            E
Sbjct: 559 HE 560


>gi|53717872|ref|YP_106858.1| flagellar MS-ring protein [Burkholderia pseudomallei K96243]
 gi|126453288|ref|YP_001064517.1| flagellar MS-ring protein [Burkholderia pseudomallei 1106a]
 gi|134283661|ref|ZP_01770360.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 305]
 gi|162210024|ref|YP_331831.2| flagellar MS-ring protein [Burkholderia pseudomallei 1710b]
 gi|226199798|ref|ZP_03795349.1| flagellar M-ring protein FliF [Burkholderia pseudomallei Pakistan
           9]
 gi|242317746|ref|ZP_04816762.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1106b]
 gi|254182183|ref|ZP_04888780.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1655]
 gi|254188113|ref|ZP_04894625.1| flagellar M-ring protein FliF [Burkholderia pseudomallei Pasteur
           52237]
 gi|254196619|ref|ZP_04903043.1| flagellar M-ring protein FliF [Burkholderia pseudomallei S13]
 gi|254259466|ref|ZP_04950520.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1710a]
 gi|52208286|emb|CAH34218.1| flagellar M-ring protein [Burkholderia pseudomallei K96243]
 gi|126226930|gb|ABN90470.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1106a]
 gi|134245070|gb|EBA45165.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 305]
 gi|157935793|gb|EDO91463.1| flagellar M-ring protein FliF [Burkholderia pseudomallei Pasteur
           52237]
 gi|169653362|gb|EDS86055.1| flagellar M-ring protein FliF [Burkholderia pseudomallei S13]
 gi|184212721|gb|EDU09764.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1655]
 gi|225928149|gb|EEH24185.1| flagellar M-ring protein FliF [Burkholderia pseudomallei Pakistan
           9]
 gi|242140985|gb|EES27387.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1106b]
 gi|254218155|gb|EET07539.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1710a]
          Length = 598

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 132/525 (25%), Positives = 219/525 (41%), Gaps = 21/525 (4%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 81  WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 140

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++SI+ + AARVH+ +P  
Sbjct: 141 LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 198

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++      V    +  A+  +V+++VP++   +VT++D  G LLT 
Sbjct: 199 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 258

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 259 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 318

Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH--------VSDRKVPLPRSLEN 328
           P+   ++S   S+    S     S          N P          S+ +   P +   
Sbjct: 319 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 378

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           +D+K+  +NYE++            ++RLS+AVVVN    T+  GR   Q      LA++
Sbjct: 379 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQV 438

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G + +RGD++ + +  F       +        D++           V    
Sbjct: 439 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 498

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
             L       ALRR                     P       GL   D   L     + 
Sbjct: 499 AALYFMFVRPALRRAFPPPAEPAA---AAVPALDGPDDMLALDGLPSPDKKQLAE-EDEE 554

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                  ++  N Y       R   +   + +  A +++ W   E
Sbjct: 555 HPALLAFENERNRYERNLDYAR--TIARQDPKIVATVVKNWVSDE 597


>gi|146312175|ref|YP_001177249.1| flagellar MS-ring protein [Enterobacter sp. 638]
 gi|145319051|gb|ABP61198.1| flagellar M-ring protein FliF [Enterobacter sp. 638]
          Length = 565

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 132/549 (24%), Positives = 232/549 (42%), Gaps = 57/549 (10%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
              +  SP Y  LY  +   D   I   L++ NI +R +DNG +I VP+  V + R+ LA
Sbjct: 42  MVLWAKSPDYRTLYSNVSDQDGGAIVTQLTQLNIPYRFADNGGAIEVPADKVHELRLRLA 101

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
            QGLP   +  G+EL D+   FG++ F ++I   RALEGE+ARTI+++  +  ARVH+ M
Sbjct: 102 QQGLPKGGA-VGFELLDQE-KFGISQFSEQINYQRALEGELARTIETLGPVKTARVHLAM 159

Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           P    F +    P+ASV +              A+ HLV++AV  L  G+VTV+D +G L
Sbjct: 160 PKPSLFVREQKNPSASVTVTLEPGRALDEGQISAVTHLVSSAVAGLPTGNVTVVDQSGHL 219

Query: 217 LTANEMER-NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LT +     ++    L     ++  I+  I   L   +G  N  + V A++N D ++  E
Sbjct: 220 LTQSNTSSRDLNDAQLKYANDVEGRIQRRIEAILGPIVGSSNIHAQVTAQINFDNKEQTE 279

Query: 276 IVYDPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDRKV------------ 320
             Y P+    +++  S+    +E      P        N P  ++               
Sbjct: 280 EQYSPNGDAAQAVMRSRQLNTTEQIGGQNPGGVPGALSNQPAPANSAPISTPPANQQNGQ 339

Query: 321 --------------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
                             S      + E +NYE++     T  +   ++RLS+AVVVN  
Sbjct: 340 QNGQQNNQQQQTTSTAASSGPRNSSRNETTNYEVDRTIRHTKMNVGDVQRLSVAVVVNYK 399

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
            L +              + +I  +   A G   +RGD++ + +  F      +    ++
Sbjct: 400 TLPDGKPL----PLTTDQMKQIEDLTREAMGFTEKRGDSLNVVNSPFTAT---DETGGEL 452

Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486
            F    S     +++A  +L+  ++   L   A+R       A++ +   + + +   I 
Sbjct: 453 PFWQQQS-FIEQMLSAGRWLLVLIVAWLLWRKAIRPQLTRR-AEEAKAAQEMMSARQDIE 510

Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546
            AV   L  ++            +  R +  R+ + V  Q   R+  M + +    A ++
Sbjct: 511 EAVEVRLSKDEQ-----------TQQRRVNQRLGAEVMSQ---RIREMSDNDPRVVALVI 556

Query: 547 RKWARSEIE 555
           R+W  ++ E
Sbjct: 557 RQWMSNDHE 565


>gi|205357292|ref|ZP_02346550.2| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205322643|gb|EDZ10482.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 585

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 130/548 (23%), Positives = 234/548 (42%), Gaps = 58/548 (10%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 63  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 122

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 123 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 180

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +              A+ HLV++AV  L  G+VT++D +G LLT
Sbjct: 181 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 240

Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  E  
Sbjct: 241 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 300

Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP-HVSDRKVPLPRSLEN----- 328
           Y P+    ++   S+    SE      P        N P   ++  +  P + +      
Sbjct: 301 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 360

Query: 329 ---------------------TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367
                                + ++ E SNYE++     T  +   +ERLS+AVVVN   
Sbjct: 361 PQTSTSTSTSTSTNSNSAGPRSTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKT 420

Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVS 427
           L +              + +I  +   A G + +RGDT+ + +  F      +    ++ 
Sbjct: 421 LADGKPL----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDDTGGELP 473

Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISS 487
           F    S     ++ A  +L+  ++   L   A+R        ++ +   +          
Sbjct: 474 FWQQQS-FIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRR-VEEAKAAQEQAQVRQETEE 531

Query: 488 AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILR 547
           AV   L  ++ +    +NQ           R+ + V  Q   R+  M + +    A ++R
Sbjct: 532 AVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIR 577

Query: 548 KWARSEIE 555
           +W  ++ E
Sbjct: 578 QWMSNDHE 585


>gi|126441455|ref|YP_001057275.1| flagellar MS-ring protein [Burkholderia pseudomallei 668]
 gi|217425051|ref|ZP_03456547.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 576]
 gi|254295774|ref|ZP_04963231.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 406e]
 gi|126220948|gb|ABN84454.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 668]
 gi|157805913|gb|EDO83083.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 406e]
 gi|217392071|gb|EEC32097.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 576]
          Length = 598

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 132/525 (25%), Positives = 219/525 (41%), Gaps = 21/525 (4%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 81  WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 140

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++SI+ + AARVH+ +P  
Sbjct: 141 LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 198

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++      V    +  A+  +V+++VP++   +VT++D  G LLT 
Sbjct: 199 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 258

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 259 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 318

Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH--------VSDRKVPLPRSLEN 328
           P+   ++S   S+    S     S          N P          S+ +   P +   
Sbjct: 319 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 378

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           +D+K+  +NYE++            ++RLS+AVVVN    T+  GR   Q      LA++
Sbjct: 379 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQV 438

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G + +RGD++ + +  F       +        D++           V    
Sbjct: 439 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 498

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
             L       ALRR                     P       GL   D   L     + 
Sbjct: 499 AALYFMFVRPALRRAFPPPAEPAA---AAVPALDGPDDVLALDGLPSPDKKQLAE-EDEE 554

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                  ++  N Y       R   +   + +  A +++ W   E
Sbjct: 555 HPALLAFENERNRYERNLDYAR--TIARQDPKIVATVVKNWVSDE 597


>gi|237810412|ref|YP_002894863.1| flagellar M-ring protein FliF [Burkholderia pseudomallei MSHR346]
 gi|237505247|gb|ACQ97565.1| flagellar M-ring protein FliF [Burkholderia pseudomallei MSHR346]
          Length = 598

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 131/526 (24%), Positives = 223/526 (42%), Gaps = 23/526 (4%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 81  WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 140

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++SI+ + AARVH+ +P  
Sbjct: 141 LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 198

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++      V    +  A+  +V+++VP++   +VT++D  G LLT 
Sbjct: 199 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 258

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 259 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 318

Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH--------VSDRKVPLPRSLEN 328
           P+   ++S   S+    S     S          N P          S+ +   P +   
Sbjct: 319 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 378

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           +D+K+  +NYE++            ++RLS+AVVVN    T+  GR   Q      LA++
Sbjct: 379 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQV 438

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G + +RGD++ + +  F       +        D++           V    
Sbjct: 439 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 498

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQ-D 507
             L       ALRR        +        L  P    A+     P+ N   +   +  
Sbjct: 499 AALYFMFVRPALRR--AFPPPAEPAAAAVPALDGPDDVLALDGLPSPDKNQLAEEDEEHP 556

Query: 508 IFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                 N ++R    +          +   + +  A +++ W   E
Sbjct: 557 ALLAFENERNRYERNLDYA-----RTIARQDPKIVATVVKNWVSDE 597


>gi|161613462|ref|YP_001587427.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|161362826|gb|ABX66594.1| hypothetical protein SPAB_01179 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 531

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 131/542 (24%), Positives = 234/542 (43%), Gaps = 52/542 (9%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 15  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 74

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 75  GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 132

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +              A+ HLV++AV  L  G+VT++D +G LLT
Sbjct: 133 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 192

Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  E  
Sbjct: 193 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 252

Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------------HVSDRKV 320
           Y P+    ++   S+    SE      P        N P                + +  
Sbjct: 253 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 312

Query: 321 PLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373
           P   +  N++        + E SNYE++     T  +   +ERLS+AVVVN   L +   
Sbjct: 313 PQTSTSTNSNNAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP 372

Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433
                      + +I  +   A G + +RGDT+ + +  F      ++   ++ F    S
Sbjct: 373 L----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDNTGGELPFWQQQS 425

Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493
                ++ A  +L+  ++   L   A+R        ++ +   +          AV   L
Sbjct: 426 -FIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRL 483

Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             ++ +    +NQ           R+ + V  Q   R+  M + +    A ++R+W  ++
Sbjct: 484 SKDEQLQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 529

Query: 554 IE 555
            E
Sbjct: 530 HE 531


>gi|326622865|gb|EGE29210.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 531

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 131/542 (24%), Positives = 234/542 (43%), Gaps = 52/542 (9%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 15  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 74

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 75  GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 132

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +              A+ HLV++AV  L  G+VT++D +G LLT
Sbjct: 133 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 192

Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  E  
Sbjct: 193 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 252

Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------------HVSDRKV 320
           Y P+    ++   S+    SE      P        N P                + +  
Sbjct: 253 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 312

Query: 321 PLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373
           P   +  N++        + E SNYE++     T  +   +ERLS+AVVVN   L +   
Sbjct: 313 PQTSTSTNSNSAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP 372

Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433
                      + +I  +   A G + +RGDT+ + +  F      ++   ++ F    S
Sbjct: 373 L----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDNTGGELPFWQQQS 425

Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493
                ++ A  +L+  ++   L   A+R        ++ +   +          AV   L
Sbjct: 426 -FIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRL 483

Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             ++ +    +NQ           R+ + V  Q   R+  M + +    A ++R+W  ++
Sbjct: 484 SKDEQLQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 529

Query: 554 IE 555
            E
Sbjct: 530 HE 531


>gi|18182538|gb|AAL65160.1|AF453480_2 flagellar MS ring protein [Burkholderia cepacia]
          Length = 587

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 126/528 (23%), Positives = 219/528 (41%), Gaps = 28/528 (5%)

Query: 38  AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97
           A   +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VPS+ V + R+ L
Sbjct: 75  ALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSNQVHETRLKL 134

Query: 98  AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
           AA GLP   S  G+EL D    FG++ F ++I   RALEGE+ RTI+SI+ +  ARVH+ 
Sbjct: 135 AAMGLPKGGS-VGFELMD-NQKFGISQFAEQINYQRALEGELQRTIESINAVRGARVHLA 192

Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
           +P    F +    P+ASV +      V      +AI  +V++ VP++   +VT++D  G 
Sbjct: 193 IPKPSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGN 252

Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LLT       +    L  VQ ++H  +  I+  LA   G  N RS V A+L+    +   
Sbjct: 253 LLTQTASASGLDASQLKYVQQVEHNTQKRIDAILAPIFGAGNARSQVSADLDFSKIEQTS 312

Query: 276 IVYDPDSKVERSIRLSKDAQRSE----------TSQPESAVTVEQNMPHVSDRKVPLPRS 325
             Y P+   +++   S+    +            ++  +                  P++
Sbjct: 313 ESYGPNGTPQQAAIRSQQTSSATELAQAARRACRARCRTRRRSRPPRRSSPGNGQNAPQT 372

Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385
              +D+K++ +NYE++     T      ++RLS+AVVVN   + +  G    Q    + L
Sbjct: 373 TPVSDRKDQTTNYELDKTIRHTEQPMGSVKRLSVAVVVNYQPVADAKGHVTMQPLPPAKL 432

Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445
           A++ ++V  A G + +RGD++ + +  F       +        D+++          + 
Sbjct: 433 AQVEQLVKDAMGYDEKRGDSVNVVNSAFSTVSDPYADLPWWRQPDMIAMAKEAAKWLGIA 492

Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505
                L       A+RR     +     +             A        D + L    
Sbjct: 493 AAAAALYFMFVRPAMRRAFPPPEPAAPALAAPEDAVALDGLPAPDKAAEEPDPLLL---- 548

Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                     ++  N Y       R   +   + +  A +++ W   E
Sbjct: 549 --------GFENEKNRYERNLDYAR--TIARQDPKIVATVVKNWVSDE 586


>gi|330818622|ref|YP_004362327.1| Flagellar M-ring protein FliF [Burkholderia gladioli BSR3]
 gi|327371015|gb|AEA62371.1| Flagellar M-ring protein FliF [Burkholderia gladioli BSR3]
          Length = 599

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 123/525 (23%), Positives = 218/525 (41%), Gaps = 25/525 (4%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL ++NI ++ +D G +I VP+S+V + R+ LA+ G
Sbjct: 86  WSRAPDYKVLYSNLSDRDGGAIIAALQQSNIPYQFTDAGGAILVPASLVHETRLKLASMG 145

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RTI SI+ + AARVH+ +P  
Sbjct: 146 LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELERTIASINAVRAARVHLAIPKP 203

Query: 162 GSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV +      V       AI  +VA+ VP++   +VT++D  G LL+ 
Sbjct: 204 SVFVREREAPSASVFVDLYPGRVLDDGQVLAITRMVASGVPDMPAKNVTIVDQDGNLLSQ 263

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
            +    +    L  VQ ++   +  I+  LA   G  N R+ V A+++    +     + 
Sbjct: 264 QQSAAGLDANQLKYVQQVERNTQKRIDAILAPMFGAGNTRAQVSADVDFSRAEQTSESFS 323

Query: 280 PDSK----VERSIRLSKDAQRSETSQPESAVTVEQNMPH-------VSDRKVPLPRSLEN 328
           P+        RS + S   + S++           N P                      
Sbjct: 324 PNGTQQQAAIRSQQTSSSTEMSQSG-AGGVPGALSNTPPQPASAPITGASGAAGTPPTPI 382

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           +D+K+  +NYE+N            ++RLS+AVVVN   + +  G    Q      L ++
Sbjct: 383 SDRKDSTTNYELNKTVSHVEQATGGIKRLSVAVVVNNLPVADAKGHVTMQPLSADKLRQV 442

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G +++RGD++ + +  F E     +        D+++          + +  
Sbjct: 443 EQLVKDAMGFDAKRGDSVNVVNSQFTELADPLANVPWWRTPDMIAMAKDIAKWLGIGVAA 502

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
             L       A+RR     +         +   P P   A+        ++   +S +  
Sbjct: 503 AALYFMFVRPAMRRAFPPPEPAAA----SAGALPGPDEPALDGLPALESSLGAQASPEAA 558

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                  + R    +          +   + +  A +++ W   E
Sbjct: 559 LLSFEADKQRYERNLDYAKM-----IARQDPKIVATVVKNWVTDE 598


>gi|321224614|gb|EFX49677.1| Flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
          Length = 531

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 131/542 (24%), Positives = 234/542 (43%), Gaps = 52/542 (9%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 15  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 74

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 75  GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 132

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +              A+ HLV++AV  L  G+VT++D +G LLT
Sbjct: 133 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 192

Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  E  
Sbjct: 193 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 252

Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------------HVSDRKV 320
           Y P+    ++   S+    SE      P        N P                + +  
Sbjct: 253 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 312

Query: 321 PLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373
           P   +  N++        + E SNYE++     T  +   +ERLS+AVVVN   L +   
Sbjct: 313 PQTSTSTNSNSAGPRSTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP 372

Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433
                      + +I  +   A G + +RGDT+ + +  F      ++   ++ F    S
Sbjct: 373 L----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDNTGGELPFWQQQS 425

Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493
                ++ A  +L+  ++   L   A+R        ++ +   +          AV   L
Sbjct: 426 -FIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRL 483

Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             ++ +    +NQ           R+ + V  Q   R+  M + +    A ++R+W  ++
Sbjct: 484 SKDEQLQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 529

Query: 554 IE 555
            E
Sbjct: 530 HE 531


>gi|29141395|ref|NP_804737.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213646788|ref|ZP_03376841.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|29137022|gb|AAO68586.1| flagellar basal-body M-ring protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 560

 Score =  425 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 130/542 (23%), Positives = 233/542 (42%), Gaps = 52/542 (9%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 44  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 103

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 104 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 161

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +              A+ HLV++AV  L  G+VT++D +G LLT
Sbjct: 162 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 221

Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  E  
Sbjct: 222 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 281

Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------------HVSDRKV 320
           Y P+    ++   S+    SE      P        N P                + +  
Sbjct: 282 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 341

Query: 321 PLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373
           P   +  N++        + E SNYE++     T  +   +ERLS+AVVVN   L +   
Sbjct: 342 PQTSTSTNSNNAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP 401

Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433
                      + +I  +   A G + +RGDT+ + +  F      ++   ++ F    S
Sbjct: 402 L----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDNTGGELPFWQQQS 454

Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493
                ++ A  +L+  ++   L   A+         ++ +   +          AV   L
Sbjct: 455 -FIDQLLAAGRWLLVLVVAWILWRKAVHPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRL 512

Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             ++ +    +NQ           R+ + V  Q   R+  M + +    A ++R+W  ++
Sbjct: 513 SKDEQLQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 558

Query: 554 IE 555
            E
Sbjct: 559 HE 560


>gi|188534120|ref|YP_001907917.1| flagellar MS-ring protein [Erwinia tasmaniensis Et1/99]
 gi|188029162|emb|CAO97034.1| Flagellar basal-body M-ring protein [Erwinia tasmaniensis Et1/99]
          Length = 571

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 127/548 (23%), Positives = 240/548 (43%), Gaps = 56/548 (10%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  LY  L   D   I   L++ N+ ++  D G ++ VP++ V + R+ LA+Q
Sbjct: 46  LWAKQPDYRVLYNNLSNEDGGAIVTQLTQMNVPYKFDDRGGALLVPAAQVHELRLRLASQ 105

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL DK   FG++ F ++I   RALEGE+ARTI ++  +  ARVH+ MP 
Sbjct: 106 GLPKGGA-VGFELLDKE-KFGISQFSEQINYQRALEGELARTIATLGPVKDARVHLAMPK 163

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +              A+ H+V+++V  +  G+VTV+D +G+LLT
Sbjct: 164 PTLFVREQKSPSASVTLALQPGRALDEGQINAVVHMVSSSVAGMPQGNVTVVDQSGRLLT 223

Query: 219 ANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            N+   R++    L     ++   +  I   L   +G  N  + V A+++ + ++  +  
Sbjct: 224 QNDTTGRDLNDAQLKYASDVETRYQQRIEAILGPIVGNSNVHAQVTAQIDFNKREKTDEQ 283

Query: 278 YDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMP--------------------- 313
           Y P+S  E+    S+    SE    +SA  V     N P                     
Sbjct: 284 YAPNSNPEQQAVRSRQTSNSEQLGGQSAGGVPGALSNQPAPANAGPVTTPNNTNANGANG 343

Query: 314 -------HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
                    ++      ++  +  + +  +NYE+N   + T  +  +++RLS+AVVVN  
Sbjct: 344 ANANNGQPANNAASGAQKTSPSNTRSDNTTNYEVNRTILHTKMNVGEVQRLSVAVVVNYR 403

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
              +  G+       ++ + +I  +   A G + +RGD++ + +  F +N          
Sbjct: 404 S--DAAGKPI--ALNEAQIKQIEDLTREAMGYSEKRGDSLNVVNSPFTQNSDLGDELPFW 459

Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486
                + + F      LV +V  +L   L    L R   ++ + +              +
Sbjct: 460 KQPAFIDQMFEAGRWLLVLIVAFILYRKLLRPQLLRKAALEKSTRE------------AA 507

Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546
           ++        + +++   ++D     R  + R+++ V  Q   R+  M E +    A ++
Sbjct: 508 TSAARNSTQQEGVSVK-LSKDELDQERKSEHRMSAEVMSQ---RIREMSENDPRVVALVI 563

Query: 547 RKWARSEI 554
           R+W + E+
Sbjct: 564 RQWMKDEL 571


>gi|186477678|ref|YP_001859148.1| flagellar MS-ring protein [Burkholderia phymatum STM815]
 gi|184194137|gb|ACC72102.1| flagellar M-ring protein FliF [Burkholderia phymatum STM815]
          Length = 593

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 136/532 (25%), Positives = 229/532 (43%), Gaps = 31/532 (5%)

Query: 38  AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97
               +  +P Y  LY  +   D   I  AL +AN+ ++ S+ G +I +P+  V + R+ L
Sbjct: 78  GLVLWSRAPDYKVLYSNVSDQDGGAIVAALQQANVPYKFSEAGGAILIPADQVHEMRLRL 137

Query: 98  AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
           A+QGLP S S  G+EL D    FG++ F ++I   RALEGE+ RTI+SIS +  ARVH+ 
Sbjct: 138 ASQGLPKSGS-VGFELMD-NQKFGISQFAEQINYQRALEGELQRTIESISTVKTARVHLA 195

Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
           +P    F +    P+ASV++      +       AI H+VA+AVP++ +  VT++D  G 
Sbjct: 196 IPKPTVFVRDREAPSASVLVNLYPGRMLDEGQVVAITHMVASAVPDMSVRGVTIVDQDGN 255

Query: 216 LLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LLT A      +    L   Q I+   +  I+  L    G  N  S+V A+++   Q++ 
Sbjct: 256 LLTQAGANGAGLDATQLKYRQQIERNTQQRIDAILGPMFGTGNAHSSVSADIDFSRQELT 315

Query: 275 EIVY----DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPH--------VSDRKVPL 322
              Y    DP     RS + S   + S++           N P          S      
Sbjct: 316 SEKYAPNNDPQQAAIRSQQTSTATEMSQSG-ASGVPGALSNQPPQPASAPITASANGASG 374

Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382
             +   +D K+  +NYE++     T      ++RLS+AVVVN  R+ +  G +  Q    
Sbjct: 375 VTTTPISDHKDSTTNYELSKTVSHTEAAVGGIKRLSVAVVVNYMRVFDAKGHATMQPISA 434

Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINA 442
             LA+++++V  A G +  RGDT+ + S  F +    ++        D+++ +       
Sbjct: 435 DKLAQVDQLVKEAMGYDQARGDTVKVISSAFQQIADPDADLPWWRTKDMIAMYKQIATYL 494

Query: 443 LVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALD 502
            + LV   L   +   ALRR           +          + +A       +   +L 
Sbjct: 495 GIGLVALFLYFVMVKPALRRAFPPPPEAVAALPSPDEPVLDGLPTAAAVAAEEDVEGSLV 554

Query: 503 SSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
           +   D   + RNL+                 +   + +  A +++ W   E 
Sbjct: 555 ALESDKAKYERNLEYA-------------RQIARQDPKIVATVVKSWVSDEH 593


>gi|291085209|ref|ZP_06352408.2| flagellar M-ring protein FliF [Citrobacter youngae ATCC 29220]
 gi|291072341|gb|EFE10450.1| flagellar M-ring protein FliF [Citrobacter youngae ATCC 29220]
          Length = 557

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 125/541 (23%), Positives = 229/541 (42%), Gaps = 53/541 (9%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ N+ +R ++   +I VP+  V + R+ LA Q
Sbjct: 44  LWAKAPDYRTLFSNLSDQDGGAIVTQLTQMNVPYRFTEGSGAIEVPADKVHELRLRLAQQ 103

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  +  ARVH+ +P 
Sbjct: 104 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKRARVHLALPK 161

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +              A+ HLV++AV  L  G+VT++D  G LLT
Sbjct: 162 PSLFVREQKAPSASVTVNLEPGRALDEGQISAVTHLVSSAVAGLPPGNVTLVDQAGHLLT 221

Query: 219 ANEMER-NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            +     ++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  E  
Sbjct: 222 QSNTSSRDLNDAQLKYASDVEGRIQRRIESILSPIVGNGNVHAQVTAQLDFANKEQTEEQ 281

Query: 278 YDPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDRKV-------------- 320
           Y P+    +++  S+    SE   +  P        N P  ++                 
Sbjct: 282 YRPNGDDSQAVLRSRQLNVSEQIGSGAPGGVPGALSNQPAPANTAPIATPPANQQNAQTT 341

Query: 321 ----PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA 376
                   +   + ++ E SNYE++     T  +   ++RLS+AVVVN   L +      
Sbjct: 342 QTTNNSSNAGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPL-- 399

Query: 377 DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHF 436
                   + +I  +   A G + +RGDT+ + +  F      + G + +          
Sbjct: 400 --PLTAEQMKQIEDLTREAMGFSDKRGDTLNVVNSPFTATD-DSMGELPLWKQPFFIDQ- 455

Query: 437 ATVINALVFLVGTLLVTFLGLHALRR--LHNIDDAKKGEVGGKSILSPPPISSAVTTGLM 494
             +++A  +L+  L+   L   A+R   L   ++AK  +                T    
Sbjct: 456 --LMSAGRWLLVLLVAWILWRKAVRPQLLRRSEEAKAAQEQ--------------TRIRQ 499

Query: 495 PNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
             +       ++D  +  R    R+ + V  Q   R+  M + +    A ++R+W  ++ 
Sbjct: 500 ETEEAVEVRLSKDEQTQQRRTNQRLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSNDH 556

Query: 555 E 555
           E
Sbjct: 557 E 557


>gi|304398855|ref|ZP_07380725.1| flagellar M-ring protein FliF [Pantoea sp. aB]
 gi|304353559|gb|EFM17936.1| flagellar M-ring protein FliF [Pantoea sp. aB]
          Length = 575

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 136/552 (24%), Positives = 231/552 (41%), Gaps = 57/552 (10%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
              +   P Y  LY  L   D   I   L++ NI +R ++NG ++ VP + V + R+ LA
Sbjct: 45  MVLWAKQPSYSVLYNNLTDEDGGAIVTQLTQMNIPYRFAENGGALMVPEANVHELRLRLA 104

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
            QGLP   S  G+EL DK   FG++ F +++   RALEGE+ARTI+S+  + +ARVH+ M
Sbjct: 105 QQGLPKGGS-VGFELLDKE-KFGISQFSEQVNYQRALEGELARTIESLGPVKSARVHLAM 162

Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           P    F +    P+ASV +             +AI H+V+++V  L  G+VTV+D TG+L
Sbjct: 163 PKPTLFVREQKAPSASVTLTLQPGRALDEGQIQAIAHMVSSSVAGLPPGNVTVVDQTGRL 222

Query: 217 LT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LT ++   R++    L     ++   +  I   L   LG  N  + V A++N DT +  +
Sbjct: 223 LTRSDSAGRDLNDAQLKYSSEVEARYQQRIEAILNPILGQGNVHAQVTAQINFDTAEQTD 282

Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVSDRK------------- 319
             Y P++    S   S+    S+ S    P        N P  ++               
Sbjct: 283 EKYQPNANPSNSAIRSRQTSTSDQSGSPYPGGVPGALSNQPAPANTAPVTTPNNNAANGQ 342

Query: 320 -----------------VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
                                 S     ++++  NYE++     T  +   ++RLS+AVV
Sbjct: 343 AANGQNNAANNASQTTSTAPASSGPTNSRRDDTVNYELDRTIRHTKVNVGDVQRLSVAVV 402

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           VN         +       +  L +I  +   A G +  RGD+I + +  F   +     
Sbjct: 403 VNF----RADDKGKAVALNEQQLKQIEDLTREAMGYSQSRGDSINVVNSQFNTTEPV--- 455

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482
           T  + F    S  F  +++A  +L+  L+   L    +R                +  + 
Sbjct: 456 TTDLPFWQQQS-FFDQLMDAGKWLLVALVAFVLYRKMVRPHLVRKQ--------AAEKAA 506

Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542
               +A      P +       ++D     R   +R+++ V  Q   R+  M E +    
Sbjct: 507 AEAVAARAATDQPQEEAFNVQLSKDELDQERKSNNRMSAEVMSQ---RIRDMSENDPRVV 563

Query: 543 AKILRKWARSEI 554
           A ++R+W   E+
Sbjct: 564 ALVIREWMSKEL 575


>gi|325918317|ref|ZP_08180454.1| flagellar basal-body M-ring protein/flagellar hook-basal body
           protein FliF [Xanthomonas vesicatoria ATCC 35937]
 gi|325535457|gb|EGD07316.1| flagellar basal-body M-ring protein/flagellar hook-basal body
           protein FliF [Xanthomonas vesicatoria ATCC 35937]
          Length = 574

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 119/569 (20%), Positives = 238/569 (41%), Gaps = 30/569 (5%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++  Q+F    SL  TR L + ++I + +   +A  F+   P Y +LY  L+       +
Sbjct: 15  EKAGQWFDRVRSLQITRKLTMMAMIALAVGAGLAVFFWSQKPGYQSLYTGLDEKGNAEAA 74

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L  A I F+I     +ISVP   +  AR+ LA  GL    +  G+EL +K   FG++ 
Sbjct: 75  DLLRTAQIPFKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQ 134

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           F++      ALE E++RTI ++  +  ARVH+ +P   +F +     +ASV++       
Sbjct: 135 FVENARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQG 194

Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240
            +    +AI +LVA+++P++    VTV+D +G++L+  +   +          V+  +  
Sbjct: 195 LERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESS 254

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I + L    G       V  +++    +    +Y+ +    RS ++S  +  +   
Sbjct: 255 YNQRIRELLEPMTGPGRVNPEVSVDMDFSVVEEARELYNGEPAKLRSEQVSDSSTSATG- 313

Query: 301 QPESAVTVEQNMPHV--------------SDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346
            P+       N P                +        +      K    NYE++     
Sbjct: 314 -PQGPPGATSNSPGQPPAPAVAGAPGTPAAANGQAAAPAAPTESSKSATRNYELDRTLQH 372

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
           T     +++R+S+AV+++        G+  +Q    + L  I  +V  A G ++ RGDT+
Sbjct: 373 TRQPAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQAVGFDAARGDTV 432

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHN 465
           ++ +  F+   +      +      +      ++ A    V  L + F  +   LR+L  
Sbjct: 433 SVMNAPFVREAVAGEEGPKWWEDPRVQNGLRLLVGA----VVVLALLFGVVRPTLRQLTG 488

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
           +   K  E G  +  +P     +    ++  DN  +     D     +  ++ I    + 
Sbjct: 489 VTAVKDKERGAGNDGTP----QSADVRMVNEDNDLMPGLEDDTAQIGQEKKTPIALPDAY 544

Query: 526 QSDLRL-LHMIEINEERFAKILRKWARSE 553
           +  +R+    ++ + +R A++++ W  SE
Sbjct: 545 EERMRVAREAVKADSKRVAQVVKGWVASE 573


>gi|213053157|ref|ZP_03346035.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|289829461|ref|ZP_06547073.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
          Length = 531

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 130/542 (23%), Positives = 233/542 (42%), Gaps = 52/542 (9%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 15  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 74

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 75  GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 132

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +              A+ HLV++AV  L  G+VT++D +G LLT
Sbjct: 133 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 192

Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  E  
Sbjct: 193 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 252

Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------------HVSDRKV 320
           Y P+    ++   S+    SE      P        N P                + +  
Sbjct: 253 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 312

Query: 321 PLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373
           P   +  N++        + E SNYE++     T  +   +ERLS+AVVVN   L +   
Sbjct: 313 PQTSTSTNSNNAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP 372

Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433
                      + +I  +   A G + +RGDT+ + +  F      ++   ++ F    S
Sbjct: 373 L----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDNTGGELPFWQQQS 425

Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493
                ++ A  +L+  ++   L   A+         ++ +   +          AV   L
Sbjct: 426 -FIDQLLAAGRWLLVLVVAWILWRKAVHPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRL 483

Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             ++ +    +NQ           R+ + V  Q   R+  M + +    A ++R+W  ++
Sbjct: 484 SKDEQLQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 529

Query: 554 IE 555
            E
Sbjct: 530 HE 531


>gi|62180544|ref|YP_216961.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62128177|gb|AAX65880.1| flagellar biosynthesis; basal-body MS(membrane and
           supramembrane)-ring and collar protein [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|322715020|gb|EFZ06591.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 560

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 131/542 (24%), Positives = 235/542 (43%), Gaps = 52/542 (9%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 44  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 103

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 104 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 161

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +              A+ HLV++AV  L +G+VT++D +G LLT
Sbjct: 162 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPLGNVTLVDQSGHLLT 221

Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  E  
Sbjct: 222 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 281

Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------------HVSDRKV 320
           Y P+    ++   S+    SE      P        N P                + +  
Sbjct: 282 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 341

Query: 321 PLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373
           P   +  N++        + E SNYE++     T  +   +ERLS+AVVVN   L +   
Sbjct: 342 PQTSTSTNSNSAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP 401

Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433
                      + +I  +   A G + +RGDT+ + +  F      ++   ++ F    S
Sbjct: 402 L----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDNTGGELPFWQQQS 454

Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493
                ++ A  +L+  ++   L   A+R        ++ +   +          AV   L
Sbjct: 455 -FIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRL 512

Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             ++ +    +NQ           R+ + V  Q   R+  M + +    A ++R+W  ++
Sbjct: 513 SKDEQLQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 558

Query: 554 IE 555
            E
Sbjct: 559 HE 560


>gi|304312787|ref|YP_003812385.1| Flagellar basal-body M-ring protein [gamma proteobacterium HdN1]
 gi|301798520|emb|CBL46750.1| Flagellar basal-body M-ring protein [gamma proteobacterium HdN1]
          Length = 575

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 114/567 (20%), Positives = 236/567 (41%), Gaps = 31/567 (5%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           + ++       +L   R + L   +   + +      +   P +  L+  + + + ++++
Sbjct: 20  NPIMAALDGLGNLPWLRQVGLMVGLAASVAIGFGVVLWSTEPEFRPLFTDVSMIEASQVA 79

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L+   I F++      + V +  +  AR+ LA +GLP   +N GYEL DK   FG + 
Sbjct: 80  DVLAREKIQFKVDPASGLVMVRAEKINDARMALAKEGLP-GGNNMGYELLDKEQGFGTSQ 138

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           FM++    R++EGE+A+TI S++ +  ARVH+ +P    F     +PTASV +       
Sbjct: 139 FMEKTRYFRSIEGELAKTISSLTPVRNARVHLAIPKRSVFINDKRKPTASVFVELYPSRS 198

Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHE 240
            +     AI HLVA++VP +   DVTV+D  G+LL+ +    E  I  + L     I+ +
Sbjct: 199 LERDQVAAIVHLVASSVPEMSSKDVTVVDQRGRLLSEDTSNGEMTIAARQLDYQHNIEEK 258

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE-- 298
               I   L   LG + F+  + A+++ +  +     Y+PD    RS +   +   +   
Sbjct: 259 YLGRIRDLLEPLLGPERFKVQLTADIDFNVVEQTAESYNPDLPALRSEQTLSEKSSAAGP 318

Query: 299 -------TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
                  ++QP  A +V +     ++       +     +++   NYE++     T    
Sbjct: 319 MGVPGALSNQPPGAASVPEQATGSNNAGNNASSTDAGNQRQQATRNYELDRTISHTRRQV 378

Query: 352 YKLERLSIAVVVNKGRLTEVLG-----RSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
             ++RLS+AVV++              +       ++ L  I  ++  A G ++ RGD++
Sbjct: 379 GGIKRLSVAVVLDDKWQNPAADAAPGTQPTRVALSEAELERITLLIKDAVGYDAARGDSV 438

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHN 465
           ++ +  F   Q  +   + +         F  VI  +   +  +++ F  L   L+ L  
Sbjct: 439 SVINQPFSPVQFDSIPDLPIWQQAW----FQDVIRQVAGWLVVIILIFGVLRPILKGLAF 494

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
                + +   +S L+      ++        ++    S  +      +          +
Sbjct: 495 QGKEDEVDSSLESALASVGADGSLGDSSFAGADVTFSGSGPNPLLPGPDAS-------FE 547

Query: 526 QSDLRLLHMIEINEERFAKILRKWARS 552
           Q    +  ++  +  R A++++ W  +
Sbjct: 548 QHIDAIRALVAEDPRRVAQVVKSWIEA 574


>gi|77457763|ref|YP_347268.1| flagellar MS-ring protein [Pseudomonas fluorescens Pf0-1]
 gi|77381766|gb|ABA73279.1| flagellar M-ring protein [Pseudomonas fluorescens Pf0-1]
          Length = 595

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 128/592 (21%), Positives = 244/592 (41%), Gaps = 66/592 (11%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  ++   L
Sbjct: 25  LSFLENLSEMTVLRQVGLLVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDAKQVMDTL 84

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + A+I + +  N  ++ V +  + +AR+ LAA G+  S  N G+E+ DK    G + FM+
Sbjct: 85  ASADIPYTVEPNSGALLVKADDLSRARLKLAAAGVTPSDGNIGFEILDKEQGLGTSQFME 144

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
                R LEGE+ARTI S++ +  ARVH+ +P    F +   +P+ASV++   +    + 
Sbjct: 145 ATRYRRGLEGELARTISSLNNVKGARVHLAIPKSSVFVRDERKPSASVLVELYSGRSLEP 204

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP L    +TV+D  G LL+  A   E  + GK     + ++  +  
Sbjct: 205 GQVVAIINLVATSVPELSKSQITVVDQKGNLLSDQAENAEMTMAGKQFDYSRRMESMLTQ 264

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            ++  L   LG D +++ V A+++    +     ++PD    RS +   + QR+ ++ P+
Sbjct: 265 RVHNILQPVLGNDRYKAEVSADVDFSAVESTAEQFNPDQPALRSEQSVNE-QRTASNGPQ 323

Query: 304 SAVTVEQNMPHVSDRKVPLPRSL----------------------------------ENT 329
                  N P                                                  
Sbjct: 324 GVPGALSNQPPSPASAPQTTGGAAAPASMVQPGQPLVDANGQQIMDPATGQPMLAPYPAD 383

Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG-RLTEVLGRSADQGKIDSYLAEI 388
            +++   N+E++     T     +L RLS++VVV+   ++    G +         LA  
Sbjct: 384 KRQQSTKNFELDRSISHTKQQQGRLNRLSVSVVVDDQVKINPANGETTRAPWSADELARF 443

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALV 444
            ++V  A G ++ RGD++++ +M F   +      +    Q  F DI+ +          
Sbjct: 444 TRLVQDAVGFDASRGDSVSVINMPFSAERGEVIADIPFYSQPWFWDIVKQ---------- 493

Query: 445 FLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDS 503
            ++G L +  L    LR  L+NI    K +                  G + ND ++L  
Sbjct: 494 -VLGVLFILVLVFGVLRPVLNNITGGGKSKELAGLGGDMELGGMGGLDGELSNDRVSLGG 552

Query: 504 SNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
               +  S S    +++N+         +  ++  +  R A+++++W  ++ 
Sbjct: 553 PTSILLPSPSEGYDAQLNA---------IKSLVAEDPGRVAQVVKEWINADE 595


>gi|161610775|ref|NP_946615.2| flagellar MS-ring protein [Rhodopseudomonas palustris CGA009]
          Length = 538

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 142/554 (25%), Positives = 242/554 (43%), Gaps = 24/554 (4%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +  LL F K    LG  R++ + +V +  +  F      V+ P    LY  L V D + I
Sbjct: 1   MQNLLGFLKG---LGAARLMAMIAVTVALVGFFAFVIMRVSQPQMTTLYTDLSVEDSSSI 57

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    I F + ++G+ + VP   V + R+ LA           GYE+FDK ++ G T
Sbjct: 58  IKELERQGIPFEMRNDGAILLVPKDKVTRLRMKLAEG-GLPKGGGVGYEIFDKSDALGTT 116

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
           SF+Q I  +RALEGE++RTI++I  + AARVH+V+P+   F +    P+AS+++R     
Sbjct: 117 SFVQNINHLRALEGELSRTIRAIDRVQAARVHLVLPERPLFSREAPEPSASIVLRVRGAL 176

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQA--IQHEI 241
             +   AIRHLVA+AV  L    V+++D  G+LL         +  + S  +    +  +
Sbjct: 177 EPQQVRAIRHLVASAVNGLKPQRVSIVDEAGQLLADGSASGEQVEGATSDERRAAFEKRM 236

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
              I   +++ +G    R  V A+ + +        +DP+ +V RS +  +++  + TS 
Sbjct: 237 RNQIEGIVSSVVGSGRARVQVSADFDYNKITQTSDKFDPEGRVLRSSQTREES--AATSA 294

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
            +  VTV   +P  +  +    R +    K EE +NYEI+  +     +  ++ RLS+AV
Sbjct: 295 ADGQVTVNNELPGANQGQGAGARDVSK--KSEETNNYEISRVTKTEVTEAGRVNRLSVAV 352

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           +V+        G      +    L  I  +V +A G + +RGD I + ++ F E      
Sbjct: 353 LVDGAYTKNDKGELVYAERPKEQLDRIAALVRSAIGFDQKRGDQIEVVNLKFAEAPQVEK 412

Query: 422 GTVQVSFMDIL---SRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
                  M +          +I   V  +  L+V F+ +  L +           +  + 
Sbjct: 413 LPEPAGLMGMFQFTKDDIMNMIQLGVMFLLGLVVLFMVIRPLVKRI---------LAAEP 463

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
                    A+  G +P   I  D         S    +++   V  QS  R+  + E N
Sbjct: 464 APEAAGGLPALADGTVPQ--IGADGQPVPASVPSMIDIAQVQGQVHAQSVHRVGELAERN 521

Query: 539 EERFAKILRKWARS 552
               A I+R+W   
Sbjct: 522 PNETAAIIRQWLAE 535


>gi|237731986|ref|ZP_04562467.1| flagellar MS-ring protein [Citrobacter sp. 30_2]
 gi|226907525|gb|EEH93443.1| flagellar MS-ring protein [Citrobacter sp. 30_2]
          Length = 557

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 125/541 (23%), Positives = 230/541 (42%), Gaps = 49/541 (9%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
              +  +P Y  L+  L   D   I   L++ N+ +R ++   +I VP+  V + R+ LA
Sbjct: 42  MVLWAKAPDYRTLFSNLSDQDGGAIVTQLTQMNVPYRFTEGSGAIEVPADKVHELRLRLA 101

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
            QGLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  +  ARVH+ M
Sbjct: 102 QQGLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKRARVHLAM 159

Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           P    F +    P+ASV +              A+ HLV++AV  L  G+VT++D  G L
Sbjct: 160 PKPSLFVREQKAPSASVTVNLEPGRALDEGQISAVTHLVSSAVAGLPPGNVTLVDQAGHL 219

Query: 217 LTANEMER-NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LT +     ++    L     ++  ++  I   L+  +G  N  + V A+L+   ++  E
Sbjct: 220 LTQSNTSSRDLNDAQLKYASDVEGRVQRRIESILSPIVGNGNVHAQVTAQLDFANKEQTE 279

Query: 276 IVYDPDSKVERSIRLSKDAQRSE--------------TSQPESAVTVEQNMPHVSDRKVP 321
             Y P+    +++  S+    SE              ++QP  A T     P  + +   
Sbjct: 280 EQYRPNGDDSQAVLRSRQLNVSEQIGSGAPGGVPGALSNQPAPANTAPIANPPANQQNAQ 339

Query: 322 LPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR 374
             ++  N++        + E SNYE++     T  +   ++RLS+AVVVN   L +    
Sbjct: 340 TTQTANNSNNAGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPL 399

Query: 375 SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSR 434
                     + +I  +   A G + +RGDT+ + +  F      + G +          
Sbjct: 400 ----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPFTATD-DSMGELPFWKQPFFID 454

Query: 435 HFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLM 494
               ++ A  +L+  L+   L   A+R        +   V  ++ +              
Sbjct: 455 Q---LMTAGRWLLVLLVAWILWRKAVRPQLVRRSEEAKAVQEQTRIR------------Q 499

Query: 495 PNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
             +       ++D  +  R    R+ + V  Q   R+  M + +    A ++R+W  ++ 
Sbjct: 500 ETEEAVEVRLSKDEQTQQRRTNQRLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSNDH 556

Query: 555 E 555
           E
Sbjct: 557 E 557


>gi|288549808|ref|ZP_05968261.2| flagellar M-ring protein FliF [Enterobacter cancerogenus ATCC
           35316]
 gi|288317495|gb|EFC56433.1| flagellar M-ring protein FliF [Enterobacter cancerogenus ATCC
           35316]
          Length = 543

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 132/543 (24%), Positives = 236/543 (43%), Gaps = 51/543 (9%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
              +  SP Y  LY  L   D   I   L++ NI +R +DNG ++ VP+  V + R+ LA
Sbjct: 26  MVLWAKSPDYRTLYSNLSDQDGGAIVTQLTQMNIPYRFADNGGALEVPADKVHELRLRLA 85

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
            QGLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ M
Sbjct: 86  QQGLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAM 143

Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           P    F +    P+ASV +              A+ HLV++AV  L  G+VT++D +G L
Sbjct: 144 PKPSLFVREQKSPSASVTVNLEPGRALDEGQISAVTHLVSSAVAGLPPGNVTLVDQSGHL 203

Query: 217 LT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LT +N   R++    L     ++  ++  I   L   +G  N  + V A+++   ++  E
Sbjct: 204 LTQSNSAGRDLNDAQLKYAADVEGRLQRRIEAILGPVVGSSNVHAQVTAQIDFANKEQTE 263

Query: 276 IVYDPDSKVERSIRLSKDAQRSE--------------TSQPESAVTVEQNMP-------- 313
             Y P+    +++  S+    +E              ++QP  A       P        
Sbjct: 264 EQYSPNGNPSQAVMRSRQVNENEQVGGPYPGGVPGALSNQPAPANAAPITTPAANQQNGQ 323

Query: 314 -HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372
            + +        S   T  + E +NYE++     T  +   ++RLS+AVVVN   L +  
Sbjct: 324 QNNAQTTSTAASSGPRTSSRNETTNYEVDRTIRHTKLNVGDVQRLSVAVVVNYKTLPDGK 383

Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDIL 432
                       + +I  +   A G + +RGDT+ + +  F      +    ++ F    
Sbjct: 384 PL----PLTTEQMKQIEDLTREAMGYSEKRGDTLNVVNSPF---SSVDETGGELPFWQQQ 436

Query: 433 SRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTG 492
           +     +++A  +L+  ++   L    +R       A+      +  ++      AV   
Sbjct: 437 A-FIDQLMSAGRWLLVLIVAWLLWRKGVRPQLQRR-AEAERAAQEQQVTRQDTEEAVEVR 494

Query: 493 LMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
           L  ++ I    +NQ           R+ + V  Q   R+  M + +    A ++R+W  +
Sbjct: 495 LSKDEQIQQRRANQ-----------RMGAEVMSQ---RIREMSDNDPRVVALVIRQWMGN 540

Query: 553 EIE 555
           E E
Sbjct: 541 EHE 543


>gi|192289867|ref|YP_001990472.1| flagellar MS-ring protein [Rhodopseudomonas palustris TIE-1]
 gi|192283616|gb|ACE99996.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris TIE-1]
          Length = 538

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 142/554 (25%), Positives = 242/554 (43%), Gaps = 24/554 (4%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +  LL F K    LG  R++ + +V +  +  F      V+ P    LY  L V D + I
Sbjct: 1   MQNLLGFLKG---LGAARLMAMIAVTVALVGFFAFVIMRVSQPQMTTLYTDLSVEDSSSI 57

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    I F + ++G+ + VP   V + R+ LA           GYE+FDK ++ G T
Sbjct: 58  IKELERQGIPFEMRNDGAILMVPKDKVTRLRMKLAEG-GLPKGGGVGYEIFDKSDALGTT 116

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
           SF+Q I  +RALEGE++RTI++I  + AARVH+V+P+   F +    P+AS+++R     
Sbjct: 117 SFVQNINHLRALEGELSRTIRAIDRVQAARVHLVLPERPLFSREAPEPSASIVLRVRGAL 176

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQA--IQHEI 241
             +   AIRHLVA+AV  L    V+++D  G+LL         +  + S  +    +  +
Sbjct: 177 EPQQVRAIRHLVASAVNGLKPQRVSIVDEAGQLLADGSASGEQVEGATSDERRAAFEKRM 236

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
              I   +++ +G    R  V A+ + +        +DP+ +V RS +  +++  + TS 
Sbjct: 237 RNQIEGIVSSVVGSGRARVQVSADFDYNKITQTSDKFDPEGRVLRSSQTREES--AATSA 294

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
            +  VTV   +P  +  +    R +    K EE +NYEI+  +     +  ++ RLS+AV
Sbjct: 295 ADGQVTVNNELPGANQGQGAGARDVSK--KSEETNNYEISRVTKTEVTEAGRVNRLSVAV 352

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           +V+        G      +    L  I  +V +A G + +RGD I + ++ F E      
Sbjct: 353 LVDGAYTKNDKGELVYAERPKEQLDRIAALVRSAIGFDQKRGDQIEVVNLKFAEAPQVEK 412

Query: 422 GTVQVSFMDIL---SRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
                  M +          +I   V  +  L+V F+ +  L +           +  + 
Sbjct: 413 LPEPAGLMGMFQFTKDDIMNMIQLGVMFLLGLVVLFMVIRPLVKRI---------LAAEP 463

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
                    A+  G +P   I  D         S    +++   V  QS  R+  + E N
Sbjct: 464 APEAAGGLPALADGTVPQ--IGADGQPVPASVPSMIDIAQVQGQVHAQSVHRVGELAERN 521

Query: 539 EERFAKILRKWARS 552
               A I+R+W   
Sbjct: 522 PNETAAIIRQWLAE 535


>gi|285018180|ref|YP_003375891.1| flagellar biosynthesis lipoprotein flif [Xanthomonas albilineans
           GPE PC73]
 gi|283473398|emb|CBA15903.1| probable flagellar biosynthesis lipoprotein flif [Xanthomonas
           albilineans]
          Length = 569

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 126/567 (22%), Positives = 237/567 (41%), Gaps = 29/567 (5%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++   +F    SL  TR + L ++I V +   +   F+   P Y  LY  L+       +
Sbjct: 13  EKAGAWFDRLQSLQITRRIGLMAMIAVAVAAGLFVFFWSQKPDYTPLYTGLDEKGTAEAT 72

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L  A I F++  +  +I+VP   +  AR+ LA  GL  SS N G+E+ +K   FG++ 
Sbjct: 73  DLLRTAQIPFKLDPSTGAITVPQEKLYDARLKLAGSGLTDSSGNMGFEVMEKDPGFGVSQ 132

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           F++      ALE E+ARTI S+  +  ARVH+ +P   +F +     +ASV++     + 
Sbjct: 133 FVENARYQHALETELARTIASLRPVREARVHLAIPKPSAFTRQREAASASVVLELRGGNT 192

Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240
            +    +AI ++VA+++P+L    VTV+D +G++LT  +   +          ++  +  
Sbjct: 193 LERNQVDAIVNMVASSIPDLSPNRVTVVDQSGRMLTIADPNSDAALNAAQFDQIRRQESS 252

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I + L    G       V  +++    +    +Y+ D    RS ++S     +   
Sbjct: 253 FNQRIRELLEPMTGPGRVNPEVSVDMDFSVTEEARELYNGDPPKLRSEQVSDSN--TSKG 310

Query: 301 QPESAVTVEQNMPHVSDRK-------------VPLPRSLENTDKKEEQSNYEINTKSIAT 347
            P+       N P  +                     +      K    NYE++     T
Sbjct: 311 GPQGVPGATSNSPGATPTGQPAAAGTPAAAAGANQQAANPTESSKSATRNYELDRTLQHT 370

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
                +++R+S+AV+V+        G+  +Q    + L  I  +V  A G N+ RGDT++
Sbjct: 371 RQPAGRIKRVSVAVLVDHVPRPGPKGKMVEQALSAAELTRIEGLVKQAVGFNAERGDTVS 430

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + +  F+      +                 V++ L  ++G  +V  L    LR      
Sbjct: 431 VMNAPFVHEATETTDKPSWW-------QDPRVMSGLRMVLGAAVVLALLFGVLRPALRQI 483

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
                  G K   +  P  + ++  ++ + N  L S  +D  S + +    I    + + 
Sbjct: 484 AGPAPAAGAKDKDNATPHDAKLS--MLEDGNPMLQSLGEDTASIAGSGNPAIALPDAYEE 541

Query: 528 DLRL-LHMIEINEERFAKILRKWARSE 553
            LRL    ++ + +R A++++ W  SE
Sbjct: 542 RLRLAREAVKQDSKRVAQVVKGWVASE 568


>gi|34498591|ref|NP_902806.1| flagellar M-ring protein [Chromobacterium violaceum ATCC 12472]
 gi|34104445|gb|AAQ60803.1| flagellar M-ring protein [Chromobacterium violaceum ATCC 12472]
          Length = 579

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 134/572 (23%), Positives = 249/572 (43%), Gaps = 31/572 (5%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           +L +      +L   R ++  + +     + + A     +P Y  L+  L   D  +++ 
Sbjct: 16  RLNEAGDRFKALPNNRKILFLTALAAIFAVVVGAVLLNRTPSYKILFSNLADRDGGQVTA 75

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
           AL + N+ +++ + G  ISVP+  V   R+ LAAQGLP +S   G+EL D    FG++ F
Sbjct: 76  ALQQMNVPYQLGE-GGVISVPADKVYDVRLKLAAQGLPKASG-VGFELMD-NQKFGISQF 132

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
            +++   R++EGE+ARTI++IS + +ARVHI  P    F +    PTASVM++     + 
Sbjct: 133 AEQVNYQRSIEGELARTIEAISSVQSARVHIATPKQSVFVREQQSPTASVMLQLYPGRML 192

Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAIQHE 240
                  I HLV+++VPNL + +VT++D  G LL+     +    +  + L  V+ I+  
Sbjct: 193 DGGQVAGILHLVSSSVPNLPLKNVTIVDQDGNLLSKQAGPDENSGLDQRQLGFVRQIEEG 252

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK----VERSIRLSKDAQR 296
               I   L    G  N R+ V A ++    +     Y P+S       RS ++S+    
Sbjct: 253 YVKRIEDILEPIFGRGNARAQVTANVDFSETEQTSETYRPNSSPNPSATRSQQISEKLVN 312

Query: 297 SE----------TSQPESAVTVEQNMPHVSDRKV----PLPRSLENTDKKEEQSNYEINT 342
                       ++QP SA +    +P  +            S   T +++  +NYE++ 
Sbjct: 313 GSANPTGVPGALSNQPPSAASAPITLPPGAAPGTANLSGGSVSASGTLQRDITTNYEVDK 372

Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402
               T      ++RLS AVVVN  R+ +  G           + +IN +V  A G NS R
Sbjct: 373 TIQHTKVPTGVVKRLSAAVVVNYRRMPDKSGEMKPTPLTPQEVQQINNLVKEAMGYNSGR 432

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           GDT+ + +  F +N      T+Q   +D +S +  +++   +  +  L + F  +  + R
Sbjct: 433 GDTLNVVNAAFADNAQPV--TMQERVIDYVSGNGTSLVKYGLLGIAVLYLLFGVVRPIMR 490

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
                 A      G++  +          G+   +     ++             +    
Sbjct: 491 DLVRPPAPAPGAEGEAAAAGAAGPGGRLLGVAGEEGEPGVAAAMAGGGEDPREAQK---R 547

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
               +   +  +++ +    A+I+++W  ++ 
Sbjct: 548 QYSSNLEAVRELVKSDPRMAAQIIKEWISADE 579


>gi|316935488|ref|YP_004110470.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris DX-1]
 gi|315603202|gb|ADU45737.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris DX-1]
          Length = 537

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 140/554 (25%), Positives = 239/554 (43%), Gaps = 25/554 (4%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +  LL F K    LG  R++ + +V +  +  F      V+ P    LY  L V D + I
Sbjct: 1   MQNLLSFLKG---LGAARLMAMIAVTVALVGFFAFVIMRVSQPQMTTLYTDLSVEDSSSI 57

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    I F + + G+ + VP   V + R+ LA           GYE+FDK ++ G T
Sbjct: 58  IKELERQGIPFEMRNEGAILLVPKDKVTRLRMKLAEG-GLPKGGGVGYEIFDKSDALGTT 116

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
           SF+Q I  +RALEGE++RTI++I  + AARVH+V+P    F +    P+AS+++R     
Sbjct: 117 SFVQNINHLRALEGELSRTIRAIDRVQAARVHLVLPARPLFSREAPEPSASIVLRVRGAL 176

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQA--IQHEI 241
             +   AIRHLVA+AV  L    V+++D  G+LL         +  + S  +    +  +
Sbjct: 177 EPQQVRAIRHLVASAVNGLKPQRVSIVDEAGQLLADGSASGEQMEGATSDERRAAFEKRM 236

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
              I   +++ +G    R  V A+ + +        +DP+ +V RS +  +++  + TS 
Sbjct: 237 RHQIEGIVSSVVGSGRARVQVSADFDYNKITQTSDTFDPEGRVLRSSQTREES--AATSA 294

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
            +  VTV   +P  +  +    R +    K EE +NYEI+  +     +  ++ RLS+AV
Sbjct: 295 ADGQVTVNNELPGANQGQGAGARDVSK--KSEETNNYEISRVTKTEVTEAGRVNRLSVAV 352

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           +V+     +  G      +    L  I  +V +A G + +RGD I + ++ F E      
Sbjct: 353 LVDGAYTKDDKGELVYAERSKEQLDRIAALVRSAIGFDQKRGDQIEVVNLKFAEAPQIEK 412

Query: 422 GTVQVSFMDIL---SRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
                  M +          +I   V  +  L+V F+ +  L +     +      G  +
Sbjct: 413 LPEPAGLMGMFQFTKDDIMNMIQLGVMFLLGLVVLFMVIRPLVKRVLAAEQTPEAAGLPA 472

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
           +                   I +D         S    +++   V  QS  R+  + E N
Sbjct: 473 LADGTV------------PQIGVDGQPVAPGMPSMIDIAQVQGQVHAQSVHRVGELAERN 520

Query: 539 EERFAKILRKWARS 552
               A I+R+W   
Sbjct: 521 PNETAAIVRQWLAE 534


>gi|330808215|ref|YP_004352677.1| flagellar MS-ring protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376323|gb|AEA67673.1| flagellar MS-ring protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 594

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 125/591 (21%), Positives = 244/591 (41%), Gaps = 65/591 (10%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  ++   L
Sbjct: 25  LSFLENLSEMTMLRQVGLLVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDAKQVMETL 84

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + A+I + +  N  ++ V +  V +AR+ LAA G+  +  N G+E+ DK    G + FM+
Sbjct: 85  ASADIPYTVEPNSGALLVKADDVARARLKLAAAGVTPTDGNIGFEILDKDQGLGTSQFME 144

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
                R LEGE+ARTI S++ +  ARVH+ +P    F +   +P+ASV++   +    + 
Sbjct: 145 ATRYRRGLEGELARTISSLNNVKGARVHLAIPKSSVFVRDERKPSASVLVELYSGRSLEP 204

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP L    +TV+D  G LL+  A   E  + GK     + ++  +  
Sbjct: 205 GQVLAIINLVATSVPELSKSQITVVDQKGNLLSDQAENSELTMAGKQFDYSRRMEGMLTQ 264

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            ++  L   LG D +++ V A+++    +     ++PD    RS +   + QR+ ++ P+
Sbjct: 265 RVHNILQPILGNDRYKAEVSADVDFSAVESTSEQFNPDQPALRSEQSVNE-QRTASNGPQ 323

Query: 304 SAVTVEQNMPHVSDRKV----------------------------------PLPRSLENT 329
                  N P                                         P+       
Sbjct: 324 GVPGALSNQPPSPASAPQTTGGATAAAGMVQPGQPLIDANGQQIMDPATGQPMLAPYPAD 383

Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN-KGRLTEVLGRSADQGKIDSYLAEI 388
            +++   N+E++     T     +L RLS+AVVV+ + ++    G ++        LA  
Sbjct: 384 KRQQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDQVKVNAANGETSRAPWSADELARF 443

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALV 444
            ++V  A G ++ RGD++++ ++ F   +      +    Q  F D++ +          
Sbjct: 444 TRLVQDAVGFDASRGDSVSVINVPFSLERGEVVADIPFYSQPWFWDVVKQ---------- 493

Query: 445 FLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSS 504
            ++G L +  L    LR + N                          G + ND ++L   
Sbjct: 494 -VLGVLFILVLVFGVLRPVLNNITGGGKSKQLAGFGDVELGGMGGLDGELANDRVSLGGP 552

Query: 505 NQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
              +  S S    +++N+         +  ++  +  R A+++++W  ++ 
Sbjct: 553 QSILLPSPSEGYDAQLNA---------IKSLVAEDPGRVAQVVKEWINADE 594


>gi|238758092|ref|ZP_04619272.1| Flagellar M-ring protein [Yersinia aldovae ATCC 35236]
 gi|238703630|gb|EEP96167.1| Flagellar M-ring protein [Yersinia aldovae ATCC 35236]
          Length = 569

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 127/549 (23%), Positives = 232/549 (42%), Gaps = 60/549 (10%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
             +  SP Y  LY  L   D   I   L++ NI +R +DNG ++ VP+  V + R+ LA 
Sbjct: 45  MLWAKSPDYRVLYSNLSDRDGGDIVTQLTQLNIPYRFADNGGALLVPAEKVHETRLRLAQ 104

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
           QGLP   +  G+EL D+   FG++ F ++I   RALEGE++RTI ++  ++  RVH+ MP
Sbjct: 105 QGLPKGGA-VGFELLDQE-KFGISQFSEQINYQRALEGELSRTIGTLGPVMNVRVHLAMP 162

Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
               F +    PTASV +              AI ++V+++V  L  G+VTV+D  G+LL
Sbjct: 163 KPSLFVREQKSPTASVTLALQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQMGRLL 222

Query: 218 TANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           T ++   R++    L     +++  +  I   LA  +G  N  + V A+++   ++  + 
Sbjct: 223 TQSDSAGRDLNAAQLKFTNEVENRFQRRIENILAPMVGNGNVHAQVTAQVDFANREQTDE 282

Query: 277 VYDP----DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSD--------------- 317
            Y P    +    RS ++S   Q   T+          N P ++                
Sbjct: 283 EYKPNQDANQGAVRSQQVSTSEQLGGTNV-GGVPGALSNQPPIAPVAPIEAPQAAPAAGA 341

Query: 318 -------------RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
                               +  +  + ++ +N+E+N     T      ++RLS+AVVVN
Sbjct: 342 TANTANTANRPATTTAAKSSATSSNSRHDQTTNFEVNRTIRHTQQQAGMVQRLSVAVVVN 401

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424
            G                  LA++  +   A G ++ RGDT+ + +  F  +      ++
Sbjct: 402 YGSDKAGK----PIALTKDQLAQVESLTREAMGFSTTRGDTLNVVNTPFSASDDTGGHSL 457

Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPP 484
                      F  ++NA  +L+  L+   L    +R +         +    S+ +   
Sbjct: 458 PFWQQPSF---FDQLLNAGRYLLILLVAWILWRKLVRPMIAKKQV--ADNAAASVNNIVQ 512

Query: 485 ISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAK 544
            ++A  T     + +AL   N          Q ++++ V  Q   R+  + + +    A 
Sbjct: 513 TAAASETAKQSKEELALRKKN----------QQKVSAEVQAQ---RIRELADKDPRVVAL 559

Query: 545 ILRKWARSE 553
           ++R+W  ++
Sbjct: 560 VIRQWMSND 568


>gi|170722857|ref|YP_001750545.1| flagellar MS-ring protein [Pseudomonas putida W619]
 gi|169760860|gb|ACA74176.1| flagellar M-ring protein FliF [Pseudomonas putida W619]
          Length = 592

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 127/590 (21%), Positives = 245/590 (41%), Gaps = 65/590 (11%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           + F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  ++   L
Sbjct: 25  MAFLENISQMPMLRQVGLLVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDTKQVMDTL 84

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + A+I + +  N  ++ V +  + +AR+ LAA G+  S  N G+EL DK    G + FM+
Sbjct: 85  AAADIPYNVEPNSGALLVKADDLSRARLKLAAAGVAPSDGNVGFELLDKEQGLGTSQFME 144

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
                R+LEGE+ART+ S++ + AARVH+ +P    F +   +P+ASV++        + 
Sbjct: 145 ATRYRRSLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDERKPSASVLVELYPGRSLEA 204

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP LD   VTV+D  G LL+    +    + GK     + ++  +  
Sbjct: 205 GQVMAIVNLVATSVPELDKSQVTVVDQKGNLLSDQLQDTALTMAGKQFDYSRRMEGMLTQ 264

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            ++  L   LG D +++ V A+L+    +     ++PD    RS +   + + S +  P+
Sbjct: 265 RVHNILQPVLGNDRYKAEVSADLDFSAVESTSEQFNPDQPALRSEQSVNEQRASSSG-PQ 323

Query: 304 SAVTVEQNMPHVS----------------------------------DRKVPLPRSLENT 329
                  N P                                         P+       
Sbjct: 324 GVPGALSNQPPAGAAAPENATAAAPAAGAIQPGQPLVDANGQQIMDPATGQPMLAPYPAD 383

Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEIN 389
            + +   N+E++     T     +L RLS+AVVV+     +  G +         LA   
Sbjct: 384 KRLQTTKNFELDRSISHTRQQQGRLTRLSVAVVVDDQVKVDAAGETTRAPWGAEDLARFT 443

Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALVF 445
           ++V  A G ++ RGD++T+ ++ F  ++      +    Q  F DI+ +           
Sbjct: 444 RLVQDAVGFDASRGDSVTVINVPFAADRGEEIADIAFYQQPWFWDIVKQ----------- 492

Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505
           ++G + +  L    LR + N +    G+    +             G + ND ++L    
Sbjct: 493 VLGVVFILVLVFGVLRPVLN-NITGGGKQAAATDSDMELGGMIGLDGELANDRVSLGGPT 551

Query: 506 QDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
             +  S S   ++++N+         +  ++  +  R A+++++W  ++ 
Sbjct: 552 SILLPSPSEGYEAQLNA---------IKGLVAEDPGRVAQVVKEWINADE 592


>gi|331673452|ref|ZP_08374220.1| flagellar M-ring protein FliF [Escherichia coli TA280]
 gi|331069650|gb|EGI41037.1| flagellar M-ring protein FliF [Escherichia coli TA280]
          Length = 552

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 136/567 (23%), Positives = 248/567 (43%), Gaps = 49/567 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           + +         LI+A    V +M+  A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 13  WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 71  NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +          
Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++  I+  I  
Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQRSETSQPES 304
            L+  +G  N  + V A+L+  +++  E  Y P+    ++   S+   ++++S +  P  
Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGG 308

Query: 305 AVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIATT 348
                 N P  ++                       S   + ++ E SNYE++     T 
Sbjct: 309 VPGALSNQPAPANNAPISTPPANQNNRQQQANTTSNSGPRSTQRNETSNYEVDRTIRHTK 368

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
            +   ++RLS+AVVVN   L +           +  + +I  +   A G + +RGD++ +
Sbjct: 369 MNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLNV 424

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
            +  F  +   +    ++ F    +     ++ A  +L+  L+   L   A+R       
Sbjct: 425 VNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRRA 480

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
                V  ++      +  AV   L  ++ +    +NQ           R+ + V  Q  
Sbjct: 481 EAMQAVQQQAQAREE-VEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ-- 526

Query: 529 LRLLHMIEINEERFAKILRKWARSEIE 555
            R+  M + +    A ++R+W  ++ E
Sbjct: 527 -RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|149928162|ref|ZP_01916408.1| flagellar M-ring protein FliF [Limnobacter sp. MED105]
 gi|149823147|gb|EDM82385.1| flagellar M-ring protein FliF [Limnobacter sp. MED105]
          Length = 575

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 130/577 (22%), Positives = 243/577 (42%), Gaps = 44/577 (7%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           + +    +    L +   + +   + + I +  +   + N   Y  L+  L   D   I 
Sbjct: 17  NPITNMQQRFAKLPQKNKMGILIGVPLLIAVIASLLMWANQTSYRVLFSGLNDQDGGAIV 76

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
            AL++  + +  +  G++I VPS+ V   R+ LA+QGLP  S  SG+E  D     G+T 
Sbjct: 77  EALTQMKVPYEFNTAGTAILVPSNKVYDTRLALASQGLPKGSV-SGFEAMD-NQKLGITQ 134

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           F +++   RALEGE+ R+IQSIS + +ARVH+ +P    F +    P+AS+++       
Sbjct: 135 FQEQVNYQRALEGELVRSIQSISAVQSARVHLAIPKPSIFIREKQTPSASIVLNLFGSRT 194

Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQAIQHEI 241
                   I HLVA+++P ++  DV+++D +G+LLT   ++E  +    L+    I+  +
Sbjct: 195 LSEPQINGIVHLVASSLPGMNPEDVSIVDQSGRLLTGKTQLESGLNPTQLAYTNQIEQSL 254

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRS 297
              I   L+   G +N R+ V A ++    +  + +Y P+        RS ++S+    S
Sbjct: 255 TSRIVDILSPVFGSENVRATVTANMDYSMSERTDEIYKPNGDTTQATIRSQQISESNDGS 314

Query: 298 ETSQPESAVTVEQNMPHVS-----------------DRKVPLPRSLENTDKKEEQSNYEI 340
             + P+    V  N P                    +     P    ++ +K+   NYE+
Sbjct: 315 SNANPQGIPGVMANTPPGEAAANIGQNPQQALANGVNGGTSTPTQTNSSTRKDSTVNYEV 374

Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400
           +     T     K+ERLS AVVVN   +T+  G +         + +++ +V  A G + 
Sbjct: 375 DKSVQYTKSQVGKIERLSAAVVVNYKTITDPKGETRQVPLTPEEITQLDSLVKQAIGFDE 434

Query: 401 RRGDTITITSMDFLENQLFNSG-TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA 459
           +RGD + + +  F + +        Q   MD+       +          L+   L    
Sbjct: 435 QRGDAVNVVNQAFTKVEEETIPMWAQQETMDLAKSLGMPI-------GVALIAAILVFGV 487

Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519
           LR +    +    + G + +        A   G   ND   L+   ++      N Q ++
Sbjct: 488 LRPMMKPAEVDLFDEGPELLPGQRMPLLANQVG-GDNDAELLEQLQREGTLPGMNRQEKM 546

Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIED 556
                     +L  + + + +  A I++ W   E ++
Sbjct: 547 E---------KLRQLAKEHPQIVASIVKNWVNGETQN 574


>gi|52428288|gb|AAU48881.1| flagellar M-ring protein FliF [Burkholderia mallei ATCC 23344]
          Length = 543

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 130/525 (24%), Positives = 218/525 (41%), Gaps = 21/525 (4%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 26  WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 85

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++S + + AARV++ +P  
Sbjct: 86  LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTVESSNAVRAARVYLAIPKP 143

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++      V    +  A+  +V+++VP++   +VT++D  G LLT 
Sbjct: 144 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 203

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 204 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 263

Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH--------VSDRKVPLPRSLEN 328
           P+   ++S   S+    S     S          N P          S+ +   P +   
Sbjct: 264 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 323

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           +D+K+  +NYE++            ++RLS+AVVVN    T+  GR   Q      LA++
Sbjct: 324 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQV 383

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G + +RGD++ + +  F       +        D++           V    
Sbjct: 384 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 443

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
             L       ALRR                     P       GL   D   L     + 
Sbjct: 444 AALYFMFVRPALRRAFPPPAEPAA---AAVPALDGPDDMLALDGLPSPDKKQLAE-EDEE 499

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                  ++  N Y       R   +   + +  A +++ W   E
Sbjct: 500 HPALLAFENERNRYERNLDYAR--TIARQDPKIVATVVKNWVSDE 542


>gi|192359622|ref|YP_001982191.1| flagellar MS-ring protein [Cellvibrio japonicus Ueda107]
 gi|190685787|gb|ACE83465.1| flagellar M-ring protein FliF [Cellvibrio japonicus Ueda107]
          Length = 569

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 130/560 (23%), Positives = 246/560 (43%), Gaps = 27/560 (4%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
            F +  +SL   R + L   +   + +  A   ++    Y  LY +++  D   +   L 
Sbjct: 21  DFLEGFSSLNLLRQIGLIITLAASVAIGFAVVMWMQGDDYRPLYGRMDNLDAANVIDVLD 80

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
           +  I F++  N  +I V +  V  AR+ LA  GLP SS  +G+EL DK    G + F++ 
Sbjct: 81  QHKIKFKMDTNTGAILVAADDVHMARLKLAEFGLP-SSPVAGFELMDKEQPLGTSQFVEN 139

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV--YK 186
               R++EGE+ARTI SI+ I +ARVH+ MP    F +  A+PTASV +           
Sbjct: 140 TRYQRSIEGELARTITSITSIRSARVHLAMPKKTVFVRDAAKPTASVFVEVFAGRTVAPA 199

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEMN 244
             +AI +LVA++VP++ M +VTV+D  G LL+  E   ++    +     + ++  +   
Sbjct: 200 QVKAIMNLVASSVPDMKMENVTVVDQHGSLLSTGEESSDLLLATRQHQYAKEVETSVIQR 259

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           IN  L   +G   FR+ V A+++    +     ++PD    RS +   ++ R+ +     
Sbjct: 260 INSILEPVVGDGKFRAQVNADIDFTAVEQAAETFNPDLPAIRSEQTLNES-RTGSELAGG 318

Query: 305 AVTVEQNMPHVSDRKVP----------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
                 N P  +  + P          + +     ++++   NYE++     T H    L
Sbjct: 319 IPGALTNQPPGTAAQAPEQIDPATGQPIQQQPPKNNREQATRNYELDRTISYTKHQQGTL 378

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           +RL++AVVV+   +    G        D+ L  ++ +V  A G ++ RGD++ + +  F 
Sbjct: 379 KRLTVAVVVDDKVVRNAEGVETRVPWTDAELERLSILVRDAVGFSAVRGDSVNVLNSPFS 438

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
                    V+ + M    +     I  L  ++  L+V F  L  L +  +   +   + 
Sbjct: 439 GIDASVQTQVEDA-MPWWQQWIMANIKYLAGILVILIVVFGLLRPLFKSLSRTGSSIADE 497

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFS-HSRNLQSRINSYVSKQSDLRLLH 533
                L+    + A     + ++ + L   +  +     +  + +IN+         +  
Sbjct: 498 EEARELAALEAAGAGKLDGISDETVTLTGGSAFMLPGPEQGYEEQINA---------IKG 548

Query: 534 MIEINEERFAKILRKWARSE 553
           +I  +  R A++++KW   +
Sbjct: 549 LIADDPGRVAQVVKKWINRD 568


>gi|148266223|ref|YP_001232929.1| flagellar M-ring protein FliF [Geobacter uraniireducens Rf4]
 gi|146399723|gb|ABQ28356.1| flagellar M-ring protein FliF [Geobacter uraniireducens Rf4]
          Length = 525

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 127/563 (22%), Positives = 247/563 (43%), Gaps = 55/563 (9%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           + +   +  +   +L   + LI+A V +  ++ F A     N   Y  L+  L   D   
Sbjct: 1   MQEGFKKLLEPFLTLPPAKRLIVAGVAVASLVAFAALIVVANKTDYRPLFANLTTEDAGE 60

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L +  + ++I+ +G +I VPS  V   R+ LA++GLP      G+E+FD+ N FG+
Sbjct: 61  IVKKLKDQKVPYQIAADGKAILVPSDKVYDLRLSLASEGLPQGGG-VGFEIFDRKN-FGM 118

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T F+Q++   RAL+GE++RTI  ++G+  ARVH+ + +   F+      TASV+++  + 
Sbjct: 119 TEFVQKLNYQRALQGELSRTIAQLAGVEQARVHLAIAEKSLFKDNEKPTTASVVLKMKSN 178

Query: 183 SVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAI 237
              +    + + HLVA+++  +D  +VTVLDS GK+L+   A+++   +        +  
Sbjct: 179 HTLRENEVQGVVHLVASSIEGMDPENVTVLDSRGKMLSKVGASDLTSKMTSTMQETQRTY 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           +  +E  +   L   +G     + V A  +    +  E  YDP+S   RS + S++    
Sbjct: 239 EKNLEDRLQTLLDKVVGTGKSVARVSATFDFKQVEKYEERYDPESAAVRSEQRSEEK--- 295

Query: 298 ETSQPESAVTVEQNMPHVSDR---KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
                  A TV   +P V        P   +     K +E  NYE++  +         +
Sbjct: 296 -----GGASTVAAGVPGVQSNMAKAAPAGVTSGGGSKSDETLNYEVSRSTARIIEPVGSM 350

Query: 355 ERLSIAVVVNKGRLTE------VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
            ++S+A++V+   +           ++  Q +    L +I  +V +A G N+ RGD +T+
Sbjct: 351 NKVSVAILVDGKYVAPASAKEGATAKAKYQPRTPDELQKIEALVKSAVGFNAERGDQVTV 410

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
            ++ F E     +      +   + +    ++  L+  +G   + FL +  L        
Sbjct: 411 ANIPFQETDDGGASDQDKWWNAPIMQ---ALLKNLLIALGFFALLFLVIRPL-------- 459

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
                     + +  P  +A T   +P D+ A+  +             +    +   + 
Sbjct: 460 ----------LKTLKPHKAASTFQPLPEDDAAMQLAE----------VHKQQLEMQSLNQ 499

Query: 529 LRLLHMIEINEERFAKILRKWAR 551
           L L+  ++ +  + A+IL+ W  
Sbjct: 500 LELIEKVKQDPYQVAQILQNWLS 522


>gi|329901251|ref|ZP_08272776.1| Flagellar M-ring protein fliF [Oxalobacteraceae bacterium IMCC9480]
 gi|327549183|gb|EGF33775.1| Flagellar M-ring protein fliF [Oxalobacteraceae bacterium IMCC9480]
          Length = 564

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 131/575 (22%), Positives = 243/575 (42%), Gaps = 47/575 (8%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           A+ + L+ F  + +  GR  +L+L + I++ +M  +    +   P Y  L+      D  
Sbjct: 9   AVPNPLISF--AESQGGRNLLLMLGAAIVIAVMAGVW--MWSQQPDYRVLFSNFTDRDGG 64

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L + N+ ++ ++ G +I VP+  V  AR+ +AA GLP    N G+EL +     G
Sbjct: 65  AIVTQLQQMNVPYKFAEGGGAILVPADQVHDARLRIAAMGLPKGG-NVGFELME-NQKLG 122

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           ++ F++++   RALEGE+AR++QSI  + +ARVH+ MP    F +   +PTASV++    
Sbjct: 123 VSQFLEQVNFQRALEGELARSVQSIGAVESARVHLAMPKASVFVRDQQKPTASVVLNLNP 182

Query: 182 PSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQA 236
                 +   AI HLVA++VP+L  G+++V+D  G LL+         G     L  +Q 
Sbjct: 183 GRSLSEQQVSAIVHLVASSVPDLPPGNISVIDQNGNLLSDTSKAAKATGLDPTQLKYIQE 242

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           +Q  I   I   +   +G +N R+   A+++  T +     Y P+S   +S   S+ +  
Sbjct: 243 VQQNIVRRIESIITPIVGPNNVRAEATADIDFSTSEQAAETYKPNSPPNQSTMRSQQSSE 302

Query: 297 SETSQPE--SAVTVEQNMPHVSDR------------------KVPLPRSLENTDKKEEQS 336
           S+ S P          N P  +                          +     +K+   
Sbjct: 303 SQGSNPGAGGVPGALSNQPAANATAPINPPAPAPAPAAGQGVSTGATATAAVPSQKDMTV 362

Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT 396
           NYE++            ++R+S+AVVVN  ++T+  G+       ++   +I  +V  A 
Sbjct: 363 NYEVDKTVRYVQQPMGGVKRISVAVVVNYKQVTDKAGKVTATPLTEAERVQITDLVKEAM 422

Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456
           G N  RGDT+ + +  F          V +     + +    +     +L+G + + +L 
Sbjct: 423 GFNKDRGDTLNVVNSAFAGVPKEVFPEVPIWKRPEMIQLAKEL---GKYLLGGIALLYLF 479

Query: 457 LHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ 516
              LR +    +  + ++                T  M   + A  ++     S S   Q
Sbjct: 480 FGVLRPMLKKFNTPQPKIRAVVDDE----DDEAETPEMRAMHAAERTTEVPAESASMAYQ 535

Query: 517 SRINSYVSKQSDLRLLHMIEINEERFAKILRKWAR 551
             ++             + + + +  A I++ W  
Sbjct: 536 QNLDLA---------KQLAKDDPKVVANIVKNWVS 561


>gi|308187290|ref|YP_003931421.1| Flagellar M-ring protein [Pantoea vagans C9-1]
 gi|308057800|gb|ADO09972.1| Flagellar M-ring protein [Pantoea vagans C9-1]
          Length = 575

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 136/553 (24%), Positives = 233/553 (42%), Gaps = 59/553 (10%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
              +   P Y  LY  L   D   I   L++ NI +R ++NG ++ VP + V + R+ LA
Sbjct: 45  MVLWAKQPSYSVLYNNLTDEDGGAIVTQLTQMNIPYRFAENGGALIVPEANVHELRLRLA 104

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
            QGLP   S  G+EL DK   FG++ F +++   RALEGE+ARTI+S+  + +ARVH+ M
Sbjct: 105 QQGLPKGGS-VGFELLDKE-KFGISQFSEQVNYQRALEGELARTIESLGPVKSARVHLAM 162

Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           P    F +    P+ASV +             +AI H+V+++V  L  G+VTV+D TG+L
Sbjct: 163 PKPTLFVREQKAPSASVTLTLQPGRALDEGQIQAIAHMVSSSVAGLPPGNVTVVDQTGRL 222

Query: 217 LT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LT ++   R++    L     ++   +  I   L   LG  N  + V A++N DT +  +
Sbjct: 223 LTRSDNAGRDLNDAQLKYSSEVEARYQQRIEAILNPILGQGNVHAQVTAQINFDTSEQTD 282

Query: 276 IVYDPD----SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV----------- 320
             Y P+    +   RS + S  + +S +  P        N P  ++              
Sbjct: 283 EKYQPNANPSNTAIRSRQTST-SDQSGSPYPGGVPGALSNQPAPANTAPVTTPNNNAANG 341

Query: 321 -------------------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
                                  S     ++++  NYE++     T  +   ++RLS+AV
Sbjct: 342 QNANGQNNAANNASQTTSTAAASSAPTNSRRDDTVNYELDRSIRHTKVNVGDVQRLSVAV 401

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           VVN         +       +  L +I  +   A G +  RGD++ + +  F   +    
Sbjct: 402 VVNF----RADDKGKAVALNEQQLKQIEDLTREAMGYSQTRGDSVNVVNSQFNTTEAV-- 455

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
            T  + F    S  F  ++NA  +L+  L+   L    +R                +  +
Sbjct: 456 -TADLPFWQQQS-FFDQLMNAGKWLLIALVAFILYRKLVRPHLVRKQ--------AAEKA 505

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
                +A      P +       ++D     R   +R+++ V  Q   R+  M E +   
Sbjct: 506 AAEAVAARAAAQQPEEEAFNVQLSKDELDQERKSNNRMSAEVMSQ---RIRDMSENDPRV 562

Query: 542 FAKILRKWARSEI 554
            A ++R+W   E+
Sbjct: 563 VALVIREWMSKEL 575


>gi|67641495|ref|ZP_00440272.1| flagellar M-ring protein FliF [Burkholderia mallei GB8 horse 4]
 gi|121601133|ref|YP_994240.1| flagellar MS-ring protein [Burkholderia mallei SAVP1]
 gi|124383455|ref|YP_001028106.1| flagellar MS-ring protein [Burkholderia mallei NCTC 10229]
 gi|126448962|ref|YP_001082916.1| flagellar MS-ring protein [Burkholderia mallei NCTC 10247]
 gi|161579508|ref|YP_104753.2| flagellar MS-ring protein [Burkholderia mallei ATCC 23344]
 gi|167004331|ref|ZP_02270091.1| flagellar M-ring protein FliF [Burkholderia mallei PRL-20]
 gi|254175223|ref|ZP_04881884.1| flagellar M-ring protein FliF [Burkholderia mallei ATCC 10399]
 gi|254201855|ref|ZP_04908219.1| flagellar M-ring protein FliF [Burkholderia mallei FMH]
 gi|254207184|ref|ZP_04913535.1| flagellar M-ring protein FliF [Burkholderia mallei JHU]
 gi|254359688|ref|ZP_04975959.1| flagellar M-ring protein FliF [Burkholderia mallei 2002721280]
 gi|121229943|gb|ABM52461.1| flagellar M-ring protein FliF [Burkholderia mallei SAVP1]
 gi|124291475|gb|ABN00744.1| flagellar M-ring protein FliF [Burkholderia mallei NCTC 10229]
 gi|126241832|gb|ABO04925.1| flagellar M-ring protein FliF [Burkholderia mallei NCTC 10247]
 gi|147747749|gb|EDK54825.1| flagellar M-ring protein FliF [Burkholderia mallei FMH]
 gi|147752726|gb|EDK59792.1| flagellar M-ring protein FliF [Burkholderia mallei JHU]
 gi|148028902|gb|EDK86834.1| flagellar M-ring protein FliF [Burkholderia mallei 2002721280]
 gi|160696268|gb|EDP86238.1| flagellar M-ring protein FliF [Burkholderia mallei ATCC 10399]
 gi|238522438|gb|EEP85882.1| flagellar M-ring protein FliF [Burkholderia mallei GB8 horse 4]
 gi|243060331|gb|EES42517.1| flagellar M-ring protein FliF [Burkholderia mallei PRL-20]
          Length = 598

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 130/525 (24%), Positives = 218/525 (41%), Gaps = 21/525 (4%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 81  WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 140

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++S + + AARV++ +P  
Sbjct: 141 LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTVESSNAVRAARVYLAIPKP 198

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++      V    +  A+  +V+++VP++   +VT++D  G LLT 
Sbjct: 199 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 258

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 259 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 318

Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH--------VSDRKVPLPRSLEN 328
           P+   ++S   S+    S     S          N P          S+ +   P +   
Sbjct: 319 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 378

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           +D+K+  +NYE++            ++RLS+AVVVN    T+  GR   Q      LA++
Sbjct: 379 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQV 438

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G + +RGD++ + +  F       +        D++           V    
Sbjct: 439 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 498

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
             L       ALRR                     P       GL   D   L     + 
Sbjct: 499 AALYFMFVRPALRRAFPPPAEPAA---AAVPALDGPDDMLALDGLPSPDKKQLAE-EDEE 554

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                  ++  N Y       R   +   + +  A +++ W   E
Sbjct: 555 HPALLAFENERNRYERNLDYAR--TIARQDPKIVATVVKNWVSDE 597


>gi|323940403|gb|EGB36594.1| flagellar M-ring protein FliF [Escherichia coli E482]
          Length = 552

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 139/568 (24%), Positives = 250/568 (44%), Gaps = 51/568 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           + +         LI+A    V +M+  A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 13  WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 71  NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +          
Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQAIQHEIEMNINK 247
            AI HLV++AV  L  G+VT++D  G LLT  N   R++    L     ++  I+  I  
Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQFNTSGRDLNDAQLKYASDVEGRIQRRIEA 248

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303
            L+  +G  N  + V A+L+  +++  E  Y P+        RS +L  ++++S +  P 
Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307

Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347
                  N P  ++                       S   + ++ E SNYE++     T
Sbjct: 308 GVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
             +   ++RLS+AVVVN   L +           +  + +I  +   A G + +RGD++ 
Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLN 423

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + +  F  +   +    ++ F    +   A ++ A  +L+  L+   L   A+R      
Sbjct: 424 VVNSPFNSS---DESGGELPFWQQQA-FIAQLLAAGRWLLVLLVAWLLWRKAVRPQLTRR 479

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
            A+  +   +   +   +  AV   L  ++ +    +NQ           R+ + V  Q 
Sbjct: 480 -AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526

Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555
             R+  M + +    A ++R+W  ++ E
Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|293410294|ref|ZP_06653870.1| flagellar M-ring protein FliF [Escherichia coli B354]
 gi|291470762|gb|EFF13246.1| flagellar M-ring protein FliF [Escherichia coli B354]
          Length = 552

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 139/568 (24%), Positives = 251/568 (44%), Gaps = 51/568 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           + +         LI+A    V +M+  A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 13  WLNRLRANPKIPLIIAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 71  NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +          
Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++  I+  I  
Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303
            L+  +G  N  + V A+L+  +++  E  Y P+        RS +L  ++++S +S P 
Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSSYPG 307

Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347
                  N P  ++                       S   + ++ E SNYE++     T
Sbjct: 308 GVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
             +   ++RLS+AVVVN   L +           +  + +I  +   A G + +RGD++ 
Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLN 423

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + +  F  +   +    ++ F    +     ++ A  +L+  L+   L   A+R      
Sbjct: 424 VVNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLT-R 478

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
            A+  +   +   +   +  AV   L  ++ +    +NQ           R+ + V  Q 
Sbjct: 479 HAEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526

Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555
             R+  M + +    A ++R+W  ++ E
Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|332161342|ref|YP_004297919.1| flagellar MS-ring protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325665572|gb|ADZ42216.1| flagellar MS-ring protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330863306|emb|CBX73430.1| flagellar M-ring protein [Yersinia enterocolitica W22703]
          Length = 559

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 127/538 (23%), Positives = 234/538 (43%), Gaps = 48/538 (8%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
             +  SP Y  LY  L   D   I   L++ NI +R +DNG ++ +P+  V + R+ LA 
Sbjct: 45  MLWAKSPDYRVLYSNLNDRDGGDIVTQLTQLNIPYRFADNGGALLIPADKVHETRLRLAQ 104

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
           QGLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI ++  ++  RVH+ MP
Sbjct: 105 QGLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIGTLGPVLNVRVHLAMP 162

Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
               F +    PTASV +              AI ++V+++V  L   +VTV+D TG+LL
Sbjct: 163 KPSLFVREQKSPTASVTLALQPGRALDDGQINAIVYMVSSSVAGLPPANVTVVDQTGRLL 222

Query: 218 TANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           T ++   R++    L     +++  +  I   LA  +G  N  + V A+++  +++  + 
Sbjct: 223 TQSDSAGRDLNAAQLKFTNEVENRFQRRIETILAPMVGSGNVHAQVTAQVDFASREQTDE 282

Query: 277 VYDP----DSKVERSIRLSKDAQRSET----------SQPESAVTVEQNMPHVSDRKVPL 322
            Y P    +    RS ++S   Q   T          +QP +       +P  +      
Sbjct: 283 EYKPNQAANQGAVRSQQVSTSEQLGGTNVGGVPGALSNQPSATPVAPIEVPQATPAAGAG 342

Query: 323 -------PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS 375
                    +  +  + ++ +N+E++     T      ++RLS+AVVVN G         
Sbjct: 343 AAANAAKQTATSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVNYGSDKAGK--- 399

Query: 376 ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435
                    LA++  +   A G ++ RGDT+ + +  F      +   +           
Sbjct: 400 -PIALSKDQLAQVESLTREAMGFSTVRGDTLNVVNTPFNATDDASGSNLPFWQQPSF--- 455

Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495
           F  ++N   +L+  L+   L    +R L  I   ++ +    S+ +    +    T    
Sbjct: 456 FDQLLNIGRYLLILLVAWILWRKLVRPL--IAKKQEADKAAASVNNIVQAAQTTETAKQT 513

Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
            + +AL   N          Q R+++ V  Q   R+  + + +    A ++R+W  ++
Sbjct: 514 KEELALRKKN----------QQRVSAEVQAQ---RIRELADKDPRIVALVIRQWMSND 558


>gi|90422618|ref|YP_530988.1| flagellar MS-ring protein [Rhodopseudomonas palustris BisB18]
 gi|90104632|gb|ABD86669.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris BisB18]
          Length = 544

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 186/555 (33%), Positives = 310/555 (55%), Gaps = 14/555 (2%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M   +   + + +   LG  R+ +LA V L          ++++ P ++ LY  L   D+
Sbjct: 1   MVNREYAQKLWSNLLELGPRRLTVLAMVGLAVFFGVGGGAYYLSRPEFNVLYSGLSREDI 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            R+S  L +AN+ F ++  G +I V      +AR  LA +GLP SS++ GYELFDK+ S 
Sbjct: 61  TRVSAVLRDANVPFDVNATGDTILVRPGQAAQARTLLADKGLP-SSTSGGYELFDKIGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEIARTIQ I G+ AARVHIVMP  GSFR+  A PTASV++R  
Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQVIKGVKAARVHIVMPARGSFRREQAPPTASVVLRTD 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS-IVQAIQH 239
            P+  K+A ++RHLVAAAVP +    VTVLDS G LL A++        +++ + + +  
Sbjct: 180 GPADAKTARSVRHLVAAAVPGMTPDKVTVLDSDGSLLGADDDGTGTTPTTMANLQRVVSR 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
            I+ N++KAL  +LG+DNF  +V  +L+ D +Q  E VYDP+S+V+RS+R  ++ + S++
Sbjct: 240 LIQDNVSKALTPYLGLDNFEVSVATQLSTDKRQTNETVYDPESRVQRSVRAVRERETSQS 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
              ++  TV+QN+P           S +   ++E+ +NYE+++K+  T  D Y + ++ +
Sbjct: 300 LDRQTPTTVQQNLPDQQLNAGGGKNSNDEKQRREDVTNYEVSSKTTTTVSDGYVVNKMFL 359

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AV+VN+ RL   LG    +  +++ +AEI+++ + A G++  RGD I +++++F+E    
Sbjct: 360 AVLVNRPRLIASLGDKVSESAMEAKVAEISQLAATAAGLDRPRGDQIQVSAVEFIEGARD 419

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
            +    ++F ++L R     ++A+  L    ++ + GL     +  +  +K  E      
Sbjct: 420 LAPVPGITFTEVLMRQSGNFVSAITILAVAGMLIWFGLRPAINVV-LASSKSSEGAPLLA 478

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
                +  A           A+ +  QD           ++         RL  +++++E
Sbjct: 479 AEAAALLGADAAVAAQIAREAMPNLVQD-----------VSRRAQHAPQKRLEQIVQLDE 527

Query: 540 ERFAKILRKWARSEI 554
           ++ A IL++W R E 
Sbjct: 528 KQAAAILKQWIRQEE 542


>gi|300904828|ref|ZP_07122654.1| flagellar M-ring protein FliF [Escherichia coli MS 84-1]
 gi|301305281|ref|ZP_07211378.1| flagellar M-ring protein FliF [Escherichia coli MS 124-1]
 gi|300403255|gb|EFJ86793.1| flagellar M-ring protein FliF [Escherichia coli MS 84-1]
 gi|300839487|gb|EFK67247.1| flagellar M-ring protein FliF [Escherichia coli MS 124-1]
 gi|315257230|gb|EFU37198.1| flagellar M-ring protein FliF [Escherichia coli MS 85-1]
          Length = 552

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 136/573 (23%), Positives = 252/573 (43%), Gaps = 52/573 (9%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           + L++     +  +  +++  S     + + +A   +  +P Y  L+  L   D   I  
Sbjct: 9   KSLEWLNRLRANPKIPLIVTGS---AAVAVMVALILWAKTPDYRTLFSNLSDQDGGAIVS 65

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F
Sbjct: 66  QLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQF 123

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
            +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +     
Sbjct: 124 SEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRAL 183

Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIE 242
                 AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++  I+
Sbjct: 184 DEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQ 243

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSE 298
             I   L+  +G  N  + V A+L+  +++  E  Y P+        RS +L  ++++S 
Sbjct: 244 RRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSG 302

Query: 299 TSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINT 342
           +  P        N P  ++                       S   + ++ E SNYE++ 
Sbjct: 303 SGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDR 362

Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402
               T  +   ++RLS+AVVVN   L +           +  + +I  +   A G + +R
Sbjct: 363 TIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEALTREAMGFSEKR 418

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           GD++ + +  F  +   + G +              ++ A  +L+  L+   L   A+R 
Sbjct: 419 GDSLNVVNSPF-NSSDESGGALPFWQQQAFIDQ---LLAAGRWLLVLLVAWLLWRKAVRP 474

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
                 A+  +   +  L+   +  AV   L  ++ +    +NQ           R+ + 
Sbjct: 475 QLTRR-AEAVKTVQQQALAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAE 522

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 523 VMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|281179000|dbj|BAI55330.1| flagellar hook-basal body MS ring protein FliF [Escherichia coli
           SE15]
          Length = 552

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 139/568 (24%), Positives = 249/568 (43%), Gaps = 51/568 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           + +         LI+A    V +M+  A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 13  WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 71  NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +          
Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++  I+  I  
Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303
            L+  +G  N  + V A+L+  +++  E  Y P+        RS +L  ++++S +  P 
Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307

Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347
                  N P  ++                       S   + ++ E SNYE++     T
Sbjct: 308 GVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
             +   ++RLS+AVVVN   L +           +  + +I  +   A G + +RGD++ 
Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEALTREAMGFSEKRGDSLN 423

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + +  F  +   + G +              ++ A  +L+  L+   L   A+R      
Sbjct: 424 VVNSPF-NSSDESGGALPFWQQQAFIDQ---LLAAGRWLLVLLVAWLLWRKAVRPQLTRR 479

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
            A+  +   +  L+   +  AV   L  ++ +    +NQ           R+ + V  Q 
Sbjct: 480 -AEAVKTVQQQALAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526

Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555
             R+  M + +    A ++R+W  ++ E
Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|51596039|ref|YP_070230.1| flagellar MS-ring protein [Yersinia pseudotuberculosis IP 32953]
 gi|51589321|emb|CAH20942.1| flagellar M-ring protein [Yersinia pseudotuberculosis IP 32953]
          Length = 570

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 130/550 (23%), Positives = 235/550 (42%), Gaps = 61/550 (11%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
             +  SP Y  LY  L   D   I   L++ NI +R +DNG ++ +P+  V + R+ LA 
Sbjct: 45  MLWAKSPDYRVLYSNLSDRDGGDIVTQLTQLNIPYRFADNGGALLIPAEKVHETRLRLAQ 104

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
           QGLP   +  G+EL D+   FG++ F ++I   RALEGE++RTI ++  ++  RVH+ MP
Sbjct: 105 QGLPKGGA-VGFELLDQE-KFGISQFSEQINYQRALEGELSRTIGTLGPVLNVRVHLAMP 162

Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
               F +    PTASV +              AI ++V+++V  L  G+VTV+D TG+LL
Sbjct: 163 KPSLFVREQKSPTASVTLALQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLL 222

Query: 218 TANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           T ++   R++    L     +++  +  I   LA  +G  N  + V A+++  +++  + 
Sbjct: 223 TQSDSAGRDLNASQLKFTSEVENRYQRRIENILAPMVGNGNVHAQVTAQVDFASREQTDE 282

Query: 277 VYDP----DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV---PLP------ 323
            Y P    +    RS ++S   Q   T+          N P V+       P P      
Sbjct: 283 EYKPNQAANQGAVRSQQVSTSEQLGGTNV-GGVPGALSNQPPVAPIAPIEIPQPAGAAAN 341

Query: 324 --------------------RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
                               ++  +  + ++ +N+E++     T      ++RLS+AVVV
Sbjct: 342 NAAPANAATTANANTTATAAKASSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVV 401

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           N                    LA++  +   A G ++ RGDT+ + +  F  +      +
Sbjct: 402 NYTSDKAGK----PIALSKDQLAQVESLTREAMGFSTVRGDTLNVVNTPFTASDDTRGSS 457

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
           +           F  ++NA  +L+  L+   L    LR +         +    S+ +  
Sbjct: 458 LPFWQQQSF---FDQLLNAGRYLLILLVAWILWRKLLRPMLAKKQV--ADKAAASVNNIV 512

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
             + A  T     + +AL   N          Q R+++ V  Q   R+  + + +    A
Sbjct: 513 QTAQAAETVKQSKEELALRKKN----------QQRVSAEVQAQ---RIRELADKDPRVVA 559

Query: 544 KILRKWARSE 553
            ++R+W  ++
Sbjct: 560 LVIRQWMSND 569


>gi|22126359|ref|NP_669782.1| flagellar MS-ring protein [Yersinia pestis KIM 10]
 gi|45441380|ref|NP_992919.1| flagellar MS-ring protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|108807202|ref|YP_651118.1| flagellar MS-ring protein [Yersinia pestis Antiqua]
 gi|108812454|ref|YP_648221.1| flagellar MS-ring protein [Yersinia pestis Nepal516]
 gi|145598582|ref|YP_001162658.1| flagellar MS-ring protein [Yersinia pestis Pestoides F]
 gi|149366222|ref|ZP_01888257.1| flagellar M-ring protein [Yersinia pestis CA88-4125]
 gi|153947408|ref|YP_001401259.1| flagellar MS-ring protein [Yersinia pseudotuberculosis IP 31758]
 gi|162421303|ref|YP_001606485.1| flagellar MS-ring protein [Yersinia pestis Angola]
 gi|165926013|ref|ZP_02221845.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165938662|ref|ZP_02227217.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166010885|ref|ZP_02231783.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166210437|ref|ZP_02236472.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167401031|ref|ZP_02306534.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167420343|ref|ZP_02312096.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167425776|ref|ZP_02317529.1| flagellar M-ring protein FliF [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|167468921|ref|ZP_02333625.1| flagellar M-ring protein FliF [Yersinia pestis FV-1]
 gi|218928951|ref|YP_002346826.1| flagellar MS-ring protein [Yersinia pestis CO92]
 gi|229897213|ref|ZP_04512369.1| flagellar M-ring protein [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229897940|ref|ZP_04513091.1| flagellar M-ring protein [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229902829|ref|ZP_04517946.1| flagellar M-ring protein [Yersinia pestis Nepal516]
 gi|270486615|ref|ZP_06203689.1| flagellar M-ring protein FliF [Yersinia pestis KIM D27]
 gi|294504003|ref|YP_003568065.1| flagellar M-ring protein [Yersinia pestis Z176003]
 gi|21959343|gb|AAM86033.1|AE013851_5 basal-body MS (membrane and supramembrane)-ring and collar protein
           [Yersinia pestis KIM 10]
 gi|45436240|gb|AAS61796.1| flagellar M-ring protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|108776102|gb|ABG18621.1| flagellar M-ring protein [Yersinia pestis Nepal516]
 gi|108779115|gb|ABG13173.1| flagellar M-ring protein [Yersinia pestis Antiqua]
 gi|115347562|emb|CAL20471.1| flagellar M-ring protein [Yersinia pestis CO92]
 gi|145210278|gb|ABP39685.1| flagellar M-ring protein [Yersinia pestis Pestoides F]
 gi|149292635|gb|EDM42709.1| flagellar M-ring protein [Yersinia pestis CA88-4125]
 gi|152958903|gb|ABS46364.1| flagellar M-ring protein FliF [Yersinia pseudotuberculosis IP
           31758]
 gi|162354118|gb|ABX88066.1| flagellar M-ring protein FliF [Yersinia pestis Angola]
 gi|165913276|gb|EDR31898.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165922217|gb|EDR39394.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165990229|gb|EDR42530.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166207617|gb|EDR52097.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166962038|gb|EDR58059.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167049420|gb|EDR60828.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167055175|gb|EDR64972.1| flagellar M-ring protein FliF [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|229680276|gb|EEO76375.1| flagellar M-ring protein [Yersinia pestis Nepal516]
 gi|229688981|gb|EEO81046.1| flagellar M-ring protein [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229693550|gb|EEO83599.1| flagellar M-ring protein [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|262361812|gb|ACY58533.1| flagellar M-ring protein [Yersinia pestis D106004]
 gi|270335119|gb|EFA45896.1| flagellar M-ring protein FliF [Yersinia pestis KIM D27]
 gi|294354462|gb|ADE64803.1| flagellar M-ring protein [Yersinia pestis Z176003]
 gi|320015431|gb|ADV99002.1| flagellar M-ring protein [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 570

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 130/550 (23%), Positives = 235/550 (42%), Gaps = 61/550 (11%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
             +  SP Y  LY  L   D   I   L++ NI +R +DNG ++ +P+  V + R+ LA 
Sbjct: 45  MLWAKSPDYRVLYSNLSDRDGGDIVTQLTQLNIPYRFADNGGALLIPAEKVHETRLRLAQ 104

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
           QGLP   +  G+EL D+   FG++ F ++I   RALEGE++RTI ++  ++  RVH+ MP
Sbjct: 105 QGLPKGGA-VGFELLDQE-KFGISQFSEQINYQRALEGELSRTIGTLGPVLNVRVHLAMP 162

Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
               F +    PTASV +              AI ++V+++V  L  G+VTV+D TG+LL
Sbjct: 163 KPSLFVREQKSPTASVTLALQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLL 222

Query: 218 TANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           T ++   R++    L     +++  +  I   LA  +G  N  + V A+++  +++  + 
Sbjct: 223 TQSDSAGRDLNASQLKFTSEVENRYQRRIENILAPMVGNGNVHAQVTAQVDFASREQTDE 282

Query: 277 VYDP----DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV---PLP------ 323
            Y P    +    RS ++S   Q   T+          N P V+       P P      
Sbjct: 283 EYKPNQAANQGAVRSQQVSTSEQLGGTNV-GGVPGALSNQPPVAPIAPIEIPQPAGAAAN 341

Query: 324 --------------------RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
                               ++  +  + ++ +N+E++     T      ++RLS+AVVV
Sbjct: 342 NAAPANTAATANANTTATAAKASSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVV 401

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           N                    LA++  +   A G ++ RGDT+ + +  F  +      +
Sbjct: 402 NYTSDKAGK----PIALSKDQLAQVESLTREAMGFSTVRGDTLNVVNTPFTASDDTRGSS 457

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
           +           F  ++NA  +L+  L+   L    LR +         +    S+ +  
Sbjct: 458 LPFWQQQSF---FDQLLNAGRYLLILLVAWILWRKLLRPMLAKKQV--ADKAAASVNNIV 512

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
             + A  T     + +AL   N          Q R+++ V  Q   R+  + + +    A
Sbjct: 513 QTAQAAETVKQSKEELALRKKN----------QQRVSAEVQAQ---RIRELADKDPRVVA 559

Query: 544 KILRKWARSE 553
            ++R+W  ++
Sbjct: 560 LVIRQWMSND 569


>gi|300920157|ref|ZP_07136607.1| flagellar M-ring protein FliF [Escherichia coli MS 115-1]
 gi|300412814|gb|EFJ96124.1| flagellar M-ring protein FliF [Escherichia coli MS 115-1]
          Length = 552

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 138/568 (24%), Positives = 250/568 (44%), Gaps = 51/568 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           + +         LI+A    V +M+  A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 13  WLNRLHANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 71  NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +          
Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++  I+  I  
Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303
            L+  +G  N  + V A+L+  +++  E  Y P+        RS +L  ++++S +  P 
Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307

Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347
                  N P  ++                       S   + ++ E SNYE++     T
Sbjct: 308 GVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
             +   ++RLS+AVVVN   L +           +  + +I  +   A G + +RGD++ 
Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLN 423

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + +  F  +   +    ++ F    +     ++ A  +L+  L+   L   A+R      
Sbjct: 424 VVNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTSR 479

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
            A+  +   +   +   +  AV   L  ++ +    +NQ           R+ + V  Q 
Sbjct: 480 -AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526

Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555
             R+  M + +    A ++R+W  ++ E
Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|170019729|ref|YP_001724683.1| flagellar MS-ring protein [Escherichia coli ATCC 8739]
 gi|188492347|ref|ZP_02999617.1| flagellar M-ring protein FliF [Escherichia coli 53638]
 gi|300951563|ref|ZP_07165396.1| flagellar M-ring protein FliF [Escherichia coli MS 116-1]
 gi|300956546|ref|ZP_07168828.1| flagellar M-ring protein FliF [Escherichia coli MS 175-1]
 gi|169754657|gb|ACA77356.1| flagellar M-ring protein FliF [Escherichia coli ATCC 8739]
 gi|188487546|gb|EDU62649.1| flagellar M-ring protein FliF [Escherichia coli 53638]
 gi|300316646|gb|EFJ66430.1| flagellar M-ring protein FliF [Escherichia coli MS 175-1]
 gi|300449190|gb|EFK12810.1| flagellar M-ring protein FliF [Escherichia coli MS 116-1]
 gi|332093105|gb|EGI98169.1| flagellar M-ring protein FliF [Shigella boydii 5216-82]
          Length = 552

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 138/568 (24%), Positives = 249/568 (43%), Gaps = 51/568 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           + +         LI+A    V +M+  A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 13  WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 71  NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +          
Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQAIQHEIEMNINK 247
            AI HLV++AV  L  G+VT++D  G LLT  N   R++    L     ++  I+  I  
Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQFNTSGRDLNDAQLKYASDVEGRIQRRIEA 248

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303
            L+  +G  N  + V A+L+  +++  E  Y P+        RS +L  ++++S +  P 
Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307

Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347
                  N P  ++                       S   + ++ E SNYE++     T
Sbjct: 308 GVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
             +   ++RLS+AVVVN   L +           +  + +I  +   A G + +RGD++ 
Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLN 423

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + +  F  +   +    ++ F    +     ++ A  +L+  L+   L   A+R      
Sbjct: 424 VVNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRR 479

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
            A+  +   +   +   +  AV   L  ++ +    +NQ           R+ + V  Q 
Sbjct: 480 -AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526

Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555
             R+  M + +    A ++R+W  ++ E
Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|82543597|ref|YP_407544.1| flagellar MS-ring protein [Shigella boydii Sb227]
 gi|81245008|gb|ABB65716.1| FliF [Shigella boydii Sb227]
 gi|320186947|gb|EFW61661.1| Flagellar M-ring protein FliF [Shigella flexneri CDC 796-83]
 gi|332096898|gb|EGJ01887.1| flagellar M-ring protein FliF [Shigella boydii 3594-74]
          Length = 552

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 138/568 (24%), Positives = 250/568 (44%), Gaps = 51/568 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           + +         LI+A    V +M+  A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 13  WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 71  NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +          
Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++  I+  I  
Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTLSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303
            L+  +G  N  + V A+L+  +++  E  Y P+        RS +L  ++++S +  P 
Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307

Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347
                  N P  ++                       S   + ++ E SNYE++     T
Sbjct: 308 GVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
             +   ++RLS+AVVVN   L +           +  + +I  +   A G + +RGD++ 
Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLN 423

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + +  F  +   +    ++ F    +     ++ A  +L+  L+   L   A+R      
Sbjct: 424 VVNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTSR 479

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
            A+  +   +   +   +  AV   L  ++ +    +NQ           R+ + V  Q 
Sbjct: 480 -AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526

Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555
             R+  M + +    A ++R+W  ++ E
Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|238788332|ref|ZP_04632126.1| Flagellar M-ring protein [Yersinia frederiksenii ATCC 33641]
 gi|238723578|gb|EEQ15224.1| Flagellar M-ring protein [Yersinia frederiksenii ATCC 33641]
          Length = 569

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 126/548 (22%), Positives = 230/548 (41%), Gaps = 58/548 (10%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
             +  SP Y  LY  L   D   I   L++ NI +R +D+G ++ +P+  V + R+ LA 
Sbjct: 45  MLWAKSPDYRVLYSNLSDRDGGDIVTQLTQLNIPYRFADHGGALLIPADKVHETRLRLAQ 104

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
           QGLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI ++  ++  RVH+ MP
Sbjct: 105 QGLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIGTLGPVLNVRVHLAMP 162

Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
               F +    PTASV +              AI ++V+++V  L   +VTV+D TG+LL
Sbjct: 163 KPSLFVREQKSPTASVTLALQPGRALDDGQINAIVYMVSSSVAGLPPANVTVVDQTGRLL 222

Query: 218 TANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           T ++   R++    L     +++  +  I   LA  +G  N  + V A+++  +++  + 
Sbjct: 223 TQSDSAGRDLNAAQLKFTNEVENRFQRRIETILAPMVGSGNVHAQVTAQVDFASREQTDE 282

Query: 277 VYDPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSD---------------- 317
            Y P+    +    S+    SE    S          N P  +                 
Sbjct: 283 EYKPNQAANQGAVRSQQVSSSEQLGGSNVGGVPGALSNQPSATPVAPIEVPQPAAAPGAT 342

Query: 318 ------------RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365
                              +  +  + ++ +N+E++     T      ++RLS+AVVVN 
Sbjct: 343 GAAANNANAANSPATTRSTATSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVNY 402

Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425
           G                  LA++  +   A G ++ RGDT+ + +  F      +   + 
Sbjct: 403 GSDKAGK----PIALTKDQLAQVESLTREAMGFSTDRGDTLNVVNTPFNATDNASGNALP 458

Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485
                     F  ++NA  +L+  L+   L    +R L  I   +  +    S+ +    
Sbjct: 459 FWQQPSF---FDQLLNAGRYLLILLVAWILWRKLVRPL--IAKKQIADKAAASVNNIVQT 513

Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545
           + A  T     + +AL   N          Q R+++ V  Q   R+  + + +    A +
Sbjct: 514 AQATETAKQSKEELALRKKN----------QQRVSAEVQAQ---RIRELADKDPRVVALV 560

Query: 546 LRKWARSE 553
           +R+W  ++
Sbjct: 561 IRQWMSND 568


>gi|186895144|ref|YP_001872256.1| flagellar MS-ring protein [Yersinia pseudotuberculosis PB1/+]
 gi|186698170|gb|ACC88799.1| flagellar M-ring protein FliF [Yersinia pseudotuberculosis PB1/+]
          Length = 570

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 130/550 (23%), Positives = 235/550 (42%), Gaps = 61/550 (11%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
             +  SP Y  LY  L   D   I   L++ NI +R +DNG ++ +P+  V + R+ LA 
Sbjct: 45  MLWAKSPDYRVLYSNLSDRDGGDIVTQLTQLNIPYRFADNGGALLIPAEKVHETRLRLAQ 104

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
           QGLP   +  G+EL D+   FG++ F ++I   RALEGE++RTI ++  ++  RVH+ MP
Sbjct: 105 QGLPKGGA-VGFELLDQE-KFGISQFSEQINYQRALEGELSRTIGTLGPVLNVRVHLAMP 162

Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
               F +    PTASV +              AI ++V+++V  L  G+VTV+D TG+LL
Sbjct: 163 KPSLFVREQKSPTASVTLALQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLL 222

Query: 218 TANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           T ++   R++    L     +++  +  I   LA  +G  N  + V A+++  +++  + 
Sbjct: 223 TQSDSAGRDLNASQLKFTSEVENRYQRRIENILAPMVGNGNVHAQVTAQVDFASREQTDE 282

Query: 277 VYDP----DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV---PLP------ 323
            Y P    +    RS ++S   Q   T+          N P V+       P P      
Sbjct: 283 EYKPNQAANQGAVRSQQVSTSEQLGGTNV-GGVPGALSNQPPVAPIAPIEIPQPAGAAAN 341

Query: 324 --------------------RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
                               ++  +  + ++ +N+E++     T      ++RLS+AVVV
Sbjct: 342 NAAPANAATTANANTTATAAKASSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVV 401

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           N                    LA++  +   A G ++ RGDT+ + +  F  +      +
Sbjct: 402 NYTSDKAGK----PIALSKDQLAQVESLTREAMGFSTVRGDTLNVVNTPFTASDDTRGSS 457

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
           +           F  ++NA  +L+  L+   L    LR +         +    S+ +  
Sbjct: 458 LPFWQQQSF---FDQLLNAGRYLLILLVAWILWRKLLRPMLAKKQV--ADNAAASVNNIV 512

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
             + A  T     + +AL   N          Q R+++ V  Q   R+  + + +    A
Sbjct: 513 QTAQAAETVKQSKEELALRKKN----------QQRVSAEVQAQ---RIRELADKDPRVVA 559

Query: 544 KILRKWARSE 553
            ++R+W  ++
Sbjct: 560 LVIRQWMSND 569


>gi|187926897|ref|YP_001893242.1| flagellar M-ring protein FliF [Ralstonia pickettii 12J]
 gi|241665226|ref|YP_002983585.1| flagellar M-ring protein FliF [Ralstonia pickettii 12D]
 gi|187728651|gb|ACD29815.1| flagellar M-ring protein FliF [Ralstonia pickettii 12J]
 gi|240867253|gb|ACS64913.1| flagellar M-ring protein FliF [Ralstonia pickettii 12D]
          Length = 611

 Score =  419 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 128/553 (23%), Positives = 241/553 (43%), Gaps = 49/553 (8%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  L+  +  +D   I  AL + N+ +R +D G++I VP + V + R+ LA+QG
Sbjct: 67  WSRAPDYRVLFSNVSDADGGAIIAALQQMNVPYRFADGGTAIMVPEANVHETRLKLASQG 126

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP     +G+EL +    FG + F +++   RALEGE+ARTIQ++  + +ARVH+ +   
Sbjct: 127 LPKGGL-AGFELME-NQKFGTSQFAEQVNYQRALEGELARTIQAMQEVQSARVHLALSKP 184

Query: 162 GSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +  A+P+ASV++      +      +AI HLV+++VPNL + +VTV+D  G+LL++
Sbjct: 185 SVFVREQAKPSASVLLTLYPGRMLDRSQVQAIGHLVSSSVPNLPLANVTVVDQAGRLLSS 244

Query: 220 N--EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
           +  +    +    L+ V+ I+      I   L   +G DN R+ V A++++D  +     
Sbjct: 245 SFQDNASGLDPTQLNYVREIEQGYIKRIEAILGPVVGDDNVRAQVTADVDLDNTEQMAET 304

Query: 278 Y----DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDR--------------- 318
           Y    DP +   RS   ++  Q    +Q         N P  + R               
Sbjct: 305 YRPNQDPSTAAVRSTHTAESTQNKADAQ-GGVPGALSNQPPTAPRMLPTAPAPASQPAAA 363

Query: 319 --KVPLPRSLE--------------NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
                  ++ +               +  ++  +NYE++     T      + RLS+AVV
Sbjct: 364 GPNGANGQAQQPAAANTNATTTNGATSSTRDTTTNYEVDKTVRRTRAAVGTVRRLSVAVV 423

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           VN     +       +   D+ +A++N +V  A G +++RGD++ + +  F         
Sbjct: 424 VNYRADGK-----TWKPLSDAEMAKLNALVKDAVGFDAKRGDSVNVVNSQFSGTLPVPKD 478

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE--VGGKSIL 480
            + +     + ++       L   +G L++ F  +  L R  N  DA      VG +   
Sbjct: 479 DLPLWKQPEMIQYAIQAAKYLALAIGFLILVFAVIRPLIRSLNKKDAPATPTFVGREGED 538

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
              PI +       P       S+         +   ++ +   +     +  + + N  
Sbjct: 539 PNAPIITGAAASAGPELEGPSSSAIGAGGEDVPDSLPQLKNADFEHKLETMRRVAQQNPR 598

Query: 541 RFAKILRKWARSE 553
             A ++++W  +E
Sbjct: 599 AVAAVIKQWVSNE 611


>gi|205352337|ref|YP_002226138.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205272118|emb|CAR36971.1| flagellar basal-body M-ring protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326627387|gb|EGE33730.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 558

 Score =  419 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 131/542 (24%), Positives = 232/542 (42%), Gaps = 54/542 (9%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R  LA Q
Sbjct: 44  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELR--LAQQ 101

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 102 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 159

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +              A+ HLV++AV  L  G+VT++D +G LLT
Sbjct: 160 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 219

Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   +   E  
Sbjct: 220 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKDQTEEH 279

Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------------HVSDRKV 320
           Y P+    ++   S+    SE      P        N P                + +  
Sbjct: 280 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 339

Query: 321 PLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373
           P   +  N++        + E SNYE++     T  +   +ERLS+AVVVN   L +   
Sbjct: 340 PQTSTSTNSNSAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP 399

Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433
                      + +I  +   A G + +RGDT+ + +  F      ++   ++ F    S
Sbjct: 400 L----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDNTGGELPFWQQQS 452

Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493
                ++ A  +L+  ++   L   A+R        ++ +   +          AV   L
Sbjct: 453 -FIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRL 510

Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             ++ +    +NQ           R+ + V  Q   R+  M + +    A ++R+W  ++
Sbjct: 511 SKDEQLQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 556

Query: 554 IE 555
            E
Sbjct: 557 HE 558


>gi|238784726|ref|ZP_04628730.1| Flagellar M-ring protein [Yersinia bercovieri ATCC 43970]
 gi|238714405|gb|EEQ06413.1| Flagellar M-ring protein [Yersinia bercovieri ATCC 43970]
          Length = 572

 Score =  419 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 131/551 (23%), Positives = 235/551 (42%), Gaps = 61/551 (11%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
             +  SP Y  LY  L   D   I   L++ NI +R +DNG ++ +P+  V + R+ LA 
Sbjct: 45  MLWAKSPDYRVLYSNLSDRDGGEIVTQLTQLNIPYRFADNGGALLIPADKVHETRLRLAQ 104

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
           QGLP   +  G+EL D+   FG++ F ++I   RALEGE+ARTI ++  ++  RVH+ MP
Sbjct: 105 QGLPKGGA-VGFELLDQE-KFGISQFSEQINYQRALEGELARTIGTLGPVLNVRVHLAMP 162

Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
               F +    PTASV +              AI ++V+++V  L  G+VTV+D TG+LL
Sbjct: 163 KPSLFVREQKSPTASVTLALQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLL 222

Query: 218 TANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           T ++   R++    L     +++  +  I   LA  +G  N  + V A+++  +++  + 
Sbjct: 223 TQSDSAGRDLNAAQLKFTNEVENRFQRRIETILAPMVGSGNVHAQVTAQVDFASREQTDE 282

Query: 277 VYDPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMP---HVSDRKVPLPRSL---- 326
            Y P+    +    S+    SE    S          N P    V+  +VP P  +    
Sbjct: 283 EYKPNQAANQGAVRSQQTSNSEQLGGSNVGGVPGALSNQPSATPVAPIEVPQPAPVAGAA 342

Query: 327 ------------------------ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
                                    +  + ++ +N+E++     T      ++RLS+AVV
Sbjct: 343 GAAANNANAANRPATTTAARSTATSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVV 402

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           VN G                  LA++  +   A G ++ RGDT+ + +  F      +  
Sbjct: 403 VNYGSDKAGK----PVALSKDQLAQVESLTREAMGFSTDRGDTLNVVNTPFNATDDGSGL 458

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482
           ++           F  ++N   +L+  L+   L    +R +  I   +  +    S+ S 
Sbjct: 459 SLPFWKQQSF---FDQLLNGGRYLLILLVAWILWRKLVRPM--IAKKQLADKAAASVNSM 513

Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542
              +    T     + +AL   N          Q R+++ V  Q   R+  + + +    
Sbjct: 514 VQTAQTAETVKQSKEELALRKKN----------QQRVSAEVQAQ---RIRELADKDPRIV 560

Query: 543 AKILRKWARSE 553
           A ++R+W  ++
Sbjct: 561 ALVIRQWMSND 571


>gi|194439576|ref|ZP_03071649.1| flagellar M-ring protein FliF [Escherichia coli 101-1]
 gi|194421485|gb|EDX37499.1| flagellar M-ring protein FliF [Escherichia coli 101-1]
 gi|323972762|gb|EGB67962.1| flagellar M-ring protein FliF [Escherichia coli TA007]
          Length = 552

 Score =  419 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 135/573 (23%), Positives = 253/573 (44%), Gaps = 52/573 (9%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           + L++     +  +  +++  S     + + +A   +  +P Y  L+  L   D   I  
Sbjct: 9   KSLEWLNRLHANPKIPLIVTGS---AAVAVMVALILWAKTPDYRTLFSNLSDQDGGAIVS 65

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F
Sbjct: 66  QLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQF 123

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
            +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +     
Sbjct: 124 SEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRAL 183

Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIE 242
                 AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++  I+
Sbjct: 184 DEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQ 243

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSE 298
             I   L+  +G  N  + V A+L+  +++  E  Y P+        RS +L  ++++S 
Sbjct: 244 RRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSG 302

Query: 299 TSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINT 342
           +  P        N P  ++                       S   + ++ E SNYE++ 
Sbjct: 303 SGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDR 362

Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402
               T  +   ++RLS+AVVVN   L +           +  + +I  +   A G + +R
Sbjct: 363 TIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKR 418

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           GD++ + +  F  +   +    ++ F    +     ++ A  +L+  L+   L   A+R 
Sbjct: 419 GDSLNVVNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRP 474

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
                 A+  +   +   +   +  AV   L  ++ +    +NQ           R+ + 
Sbjct: 475 QLTRR-AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAE 522

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 523 VMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|238764898|ref|ZP_04625838.1| Flagellar M-ring protein [Yersinia kristensenii ATCC 33638]
 gi|238696917|gb|EEP89694.1| Flagellar M-ring protein [Yersinia kristensenii ATCC 33638]
          Length = 572

 Score =  419 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 130/552 (23%), Positives = 233/552 (42%), Gaps = 63/552 (11%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
             +  SP Y  LY  L   D   I   L++ NI +R +DNG ++ +P+  V + R+ LA 
Sbjct: 45  MLWAKSPDYRVLYSNLSDRDGGDIVTQLTQLNIPYRFADNGGALLIPADKVHETRLRLAQ 104

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
           QGLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI ++  ++  RVH+ MP
Sbjct: 105 QGLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTISTLGPVLNVRVHLAMP 162

Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
               F +    PTASV +              AI ++V+++V  L    VTV+D TG+LL
Sbjct: 163 KPSLFVREQKSPTASVTLALQPGRALDDGQINAIVYMVSSSVAGLPPASVTVVDQTGRLL 222

Query: 218 TANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           T ++   R++    L     +++  +  I   LA  +G  N  + V A+++  +++  + 
Sbjct: 223 TQSDSAGRDLNAAQLKFTNEVENRFQRRIETILAPMVGSGNIHAQVTAQVDFSSREQTDE 282

Query: 277 VYDP----DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV------------ 320
            Y P    +    RS ++S   Q   T+          N P V+                
Sbjct: 283 EYKPNQAANQGAVRSQQVSTSEQLGGTNV-GGVPGALSNQPPVTPVAPIEVPPATPAAGA 341

Query: 321 -------------------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
                                  +  +  + ++ +N+E++     T      ++RLS+AV
Sbjct: 342 GAPANTANAANRPAATTTAARQTATSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAV 401

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           VVN G  T+  G+          LA++  +   A G ++ RGDT+ + +  F        
Sbjct: 402 VVNYG--TDKAGKPI--ALSKEQLAQVESLTREAMGFSTDRGDTLNVVNTPFSATGDDTG 457

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
            ++           F  +IN   +L+  L+   L    +R L         +    S+ +
Sbjct: 458 SSLPFWQQQSF---FDQLINIGRYLLILLVAWILWRKLVRPLMEKKQV--ADKATASVNT 512

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
               + A  T     + +AL   N          Q R+++ V  Q   R+  + + +   
Sbjct: 513 LVQTAQASETAKQTKEELALRKKN----------QQRVSAEVQAQ---RIRELADKDPRV 559

Query: 542 FAKILRKWARSE 553
            A ++R+W  ++
Sbjct: 560 VALVIRQWMSND 571


>gi|325920574|ref|ZP_08182496.1| flagellar basal-body M-ring protein/flagellar hook-basal body
           protein FliF [Xanthomonas gardneri ATCC 19865]
 gi|325548967|gb|EGD19899.1| flagellar basal-body M-ring protein/flagellar hook-basal body
           protein FliF [Xanthomonas gardneri ATCC 19865]
          Length = 576

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 115/570 (20%), Positives = 236/570 (41%), Gaps = 30/570 (5%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++  Q+F    SL  TR L + ++I + +   +A  ++   P Y +LY  L+       +
Sbjct: 15  EKAGQWFDRVRSLQITRKLTMMAMIALAVGAGLAVFYWSQKPGYQSLYTGLDDKGNAEAA 74

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L  A I ++I  N  +ISVP   +  AR+ LA  GL    +  G+EL +K   FG++ 
Sbjct: 75  DLLRTAQIPYKIDQNTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQ 134

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           F++      ALE E++RTI ++  +  ARVH+ +P   +F +     +ASV++       
Sbjct: 135 FVENARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQG 194

Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240
            +    +AI +LVA+++P++    VTV+D +G++L+  +   +          V+  +  
Sbjct: 195 LERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESS 254

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I + L    G       V  +++    +    +Y+ +    RS +++  +  +   
Sbjct: 255 YNQRIRELLEPMTGAGRVNPEVSVDMDFSVVEEARELYNGEPAKLRSEQINDTSTSATGP 314

Query: 301 QPESAVTVEQ---------------NMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSI 345
           Q     T                       +        +      K    NYE++    
Sbjct: 315 QGPPGATSNSPGQPPAPAANATAGAPGAPAAANGQAAAPAAPTESSKSATRNYELDRTLQ 374

Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
            T     +++R+S+AV+++        G+  +Q    + L  I  +V  A G ++ RGDT
Sbjct: 375 HTRQPAGRIKRVSVAVLLDNVPRPGAKGKIVEQPLTAAELTRIEGLVKQAVGFDAARGDT 434

Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLH 464
           +++ +  F+   +      +      +      ++ A    V  L + F  +   LR+L 
Sbjct: 435 VSVMNAPFVREAVAGEEGPKWWEDPRVQNGLRLLVGA----VVVLALLFGVVRPTLRQLT 490

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
            +   K  +  G    +P           M +D+  +    +D     ++ +  I    +
Sbjct: 491 GVTVVKDKQGKGGKDGTPQSADVR-----MVDDDDLMPRLEEDTAQLGQDKKVPIALPDA 545

Query: 525 KQSDLRL-LHMIEINEERFAKILRKWARSE 553
            +  +R+    ++ + +R A++++ W  SE
Sbjct: 546 YEERMRVAREAVKADSKRVAQVVKGWVASE 575


>gi|331647532|ref|ZP_08348624.1| flagellar M-ring protein FliF [Escherichia coli M605]
 gi|330911744|gb|EGH40254.1| flagellar M-ring protein FliF [Escherichia coli AA86]
 gi|331043256|gb|EGI15394.1| flagellar M-ring protein FliF [Escherichia coli M605]
          Length = 552

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 139/568 (24%), Positives = 249/568 (43%), Gaps = 51/568 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           + +         LI+A    V +M+  A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 13  WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRILFSNLSDQDGGAIVSQLTQM 70

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 71  NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +          
Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++  I+  I  
Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303
            L+  +G  N  + V A+L+  +++  E  Y P+        RS +L  ++++S +  P 
Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307

Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347
                  N P  ++                       S   + ++ E SNYE++     T
Sbjct: 308 GVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
             +   ++RLS+AVVVN   L +           +  + +I  +   A G + +RGD++ 
Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEALTREAMGFSEKRGDSLN 423

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + +  F  +   + G +              ++ A  +L+  L+   L   A+R      
Sbjct: 424 VVNSPF-NSSDESGGALPFWQQQAFIDQ---LLAAGRWLLVLLVAWLLWRKAVRPQLTRR 479

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
            A+  +   +  L+   +  AV   L  ++ +    +NQ           R+ + V  Q 
Sbjct: 480 -AEAVKTVQQQALAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526

Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555
             R+  M + +    A ++R+W  ++ E
Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|218705431|ref|YP_002412950.1| flagellar MS-ring protein [Escherichia coli UMN026]
 gi|293405421|ref|ZP_06649413.1| fliF [Escherichia coli FVEC1412]
 gi|298381064|ref|ZP_06990663.1| flagellar M-ring protein [Escherichia coli FVEC1302]
 gi|218432528|emb|CAR13421.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           UMN026]
 gi|291427629|gb|EFF00656.1| fliF [Escherichia coli FVEC1412]
 gi|298278506|gb|EFI20020.1| flagellar M-ring protein [Escherichia coli FVEC1302]
          Length = 552

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 138/568 (24%), Positives = 250/568 (44%), Gaps = 51/568 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           + +         LI+A    V +M+  A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 13  WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 71  NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +          
Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++  I+  I  
Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303
            L+  +G  N  + V A+L+  +++  E  Y P+        RS +L  ++++S +  P 
Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307

Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347
                  N P  ++                       S   + ++ E SNYE++     T
Sbjct: 308 GVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
             +   ++RLS+AVVVN   L +           +  + +I  +   A G + +RGD++ 
Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLN 423

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + +  F  +   +    ++ F    +     ++ A  +L+  L+   L   A+R      
Sbjct: 424 VVNSPFNSS---DESGGELPFWQQQA-FIDQLMAAGRWLLVLLVAWLLWRKAVRPQLTRR 479

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
            A+  +   +   +   +  AV   L  ++ +    +NQ           R+ + V  Q 
Sbjct: 480 -AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526

Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555
             R+  M + +    A ++R+W  ++ E
Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|16129885|ref|NP_416448.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           str. K-12 substr. MG1655]
 gi|89108770|ref|AP_002550.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           str. K-12 substr. W3110]
 gi|157161409|ref|YP_001458727.1| flagellar MS-ring protein [Escherichia coli HS]
 gi|170081582|ref|YP_001730902.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           str. K-12 substr. DH10B]
 gi|170682432|ref|YP_001743307.1| flagellar MS-ring protein [Escherichia coli SMS-3-5]
 gi|193071157|ref|ZP_03052081.1| flagellar M-ring protein FliF [Escherichia coli E110019]
 gi|218554518|ref|YP_002387431.1| flagellar MS-ring protein [Escherichia coli IAI1]
 gi|238901143|ref|YP_002926939.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           BW2952]
 gi|253773113|ref|YP_003035944.1| flagellar MS-ring protein [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|260855913|ref|YP_003229804.1| flagellar basal-body MS-ring and collar protein FliF [Escherichia
           coli O26:H11 str. 11368]
 gi|300822292|ref|ZP_07102433.1| flagellar M-ring protein FliF [Escherichia coli MS 119-7]
 gi|301018212|ref|ZP_07182727.1| flagellar M-ring protein FliF [Escherichia coli MS 69-1]
 gi|331663434|ref|ZP_08364344.1| flagellar M-ring protein FliF [Escherichia coli TA143]
 gi|331668629|ref|ZP_08369477.1| flagellar M-ring protein FliF [Escherichia coli TA271]
 gi|2506421|sp|P25798|FLIF_ECOLI RecName: Full=Flagellar M-ring protein
 gi|1736604|dbj|BAA15763.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           str. K12 substr. W3110]
 gi|1788248|gb|AAC75005.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           str. K-12 substr. MG1655]
 gi|157067089|gb|ABV06344.1| flagellar M-ring protein FliF [Escherichia coli HS]
 gi|169889417|gb|ACB03124.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           str. K-12 substr. DH10B]
 gi|170520150|gb|ACB18328.1| flagellar M-ring protein FliF [Escherichia coli SMS-3-5]
 gi|192955552|gb|EDV86031.1| flagellar M-ring protein FliF [Escherichia coli E110019]
 gi|218361286|emb|CAQ98870.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           IAI1]
 gi|238861094|gb|ACR63092.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           BW2952]
 gi|253324157|gb|ACT28759.1| flagellar M-ring protein FliF [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|257754562|dbj|BAI26064.1| flagellar basal-body MS-ring and collar protein FliF [Escherichia
           coli O26:H11 str. 11368]
 gi|260448949|gb|ACX39371.1| flagellar M-ring protein FliF [Escherichia coli DH1]
 gi|284921846|emb|CBG34921.1| flagellar M-ring protein [Escherichia coli 042]
 gi|300399799|gb|EFJ83337.1| flagellar M-ring protein FliF [Escherichia coli MS 69-1]
 gi|300525175|gb|EFK46244.1| flagellar M-ring protein FliF [Escherichia coli MS 119-7]
 gi|309702227|emb|CBJ01544.1| flagellar M-ring protein [Escherichia coli ETEC H10407]
 gi|315136575|dbj|BAJ43734.1| flagellar MS-ring protein [Escherichia coli DH1]
 gi|323152731|gb|EFZ39003.1| flagellar M-ring protein FliF [Escherichia coli EPECa14]
 gi|323937208|gb|EGB33488.1| flagellar M-ring protein FliF [Escherichia coli E1520]
 gi|324118987|gb|EGC12876.1| flagellar M-ring protein FliF [Escherichia coli E1167]
 gi|331059233|gb|EGI31210.1| flagellar M-ring protein FliF [Escherichia coli TA143]
 gi|331063823|gb|EGI35734.1| flagellar M-ring protein FliF [Escherichia coli TA271]
          Length = 552

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 138/568 (24%), Positives = 250/568 (44%), Gaps = 51/568 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           + +         LI+A    V +M+  A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 13  WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 71  NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +          
Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++  I+  I  
Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303
            L+  +G  N  + V A+L+  +++  E  Y P+        RS +L  ++++S +  P 
Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307

Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347
                  N P  ++                       S   + ++ E SNYE++     T
Sbjct: 308 GVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
             +   ++RLS+AVVVN   L +           +  + +I  +   A G + +RGD++ 
Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLN 423

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + +  F  +   +    ++ F    +     ++ A  +L+  L+   L   A+R      
Sbjct: 424 VVNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRR 479

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
            A+  +   +   +   +  AV   L  ++ +    +NQ           R+ + V  Q 
Sbjct: 480 -AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526

Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555
             R+  M + +    A ++R+W  ++ E
Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|332343664|gb|AEE56998.1| flagellar M-ring protein FliF [Escherichia coli UMNK88]
          Length = 552

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 135/573 (23%), Positives = 253/573 (44%), Gaps = 52/573 (9%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           + L++     +  +  +++  S     + + +A   +  +P Y  L+  L   D   I  
Sbjct: 9   KSLEWLNRLRANPKIPLIVTGS---AAVAVMVALILWAKTPDYRTLFSNLSDQDGGAIVS 65

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F
Sbjct: 66  QLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQF 123

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
            +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +     
Sbjct: 124 SEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRAL 183

Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIE 242
                 AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++  I+
Sbjct: 184 DEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQ 243

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSE 298
             I   L+  +G  N  + V A+L+  +++  E  Y P+        RS +L  ++++S 
Sbjct: 244 RRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSG 302

Query: 299 TSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINT 342
           +  P        N P  ++                       S   + ++ E SNYE++ 
Sbjct: 303 SGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDR 362

Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402
               T  +   ++RLS+AVVVN   L +           +  + +I  +   A G + +R
Sbjct: 363 TIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKR 418

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           GD++ + +  F  +   +    ++ F    +     ++ A  +L+  L+   L   A+R 
Sbjct: 419 GDSLNVVNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRP 474

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
                 A+  +   +   +   +  AV   L  ++ +    +NQ           R+ + 
Sbjct: 475 QLTRR-AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAE 522

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 523 VMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|83747628|ref|ZP_00944664.1| FliF [Ralstonia solanacearum UW551]
 gi|207739709|ref|YP_002258102.1| flagellar m-ring protein [Ralstonia solanacearum IPO1609]
 gi|83725680|gb|EAP72822.1| FliF [Ralstonia solanacearum UW551]
 gi|206593091|emb|CAQ59997.1| flagellar m-ring protein [Ralstonia solanacearum IPO1609]
          Length = 611

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 137/555 (24%), Positives = 245/555 (44%), Gaps = 49/555 (8%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
             +  +P Y  LY  +  SD   I  AL + N+ +R +D GS+I VP + V +AR+ LAA
Sbjct: 65  TLWSRAPDYRVLYSNVADSDGGAIIAALQQMNVPYRFADGGSAIMVPEANVHEARLKLAA 124

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
           QGLP     +G+EL +    FG + F +++   RALEGE+ARTIQ++  + +ARVH+ + 
Sbjct: 125 QGLPKGGL-AGFELME-NQKFGTSQFAEQVNYQRALEGELARTIQAMQEVQSARVHLALS 182

Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
               F +  A+P+ASV+++     +      +AI HLV+++VPNL + +VTV+D +G+LL
Sbjct: 183 KPSVFVREQAKPSASVLLKLYPGRMLDRSQVQAIGHLVSSSVPNLPLANVTVVDQSGRLL 242

Query: 218 TAN--EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           +++  +    +    L+ V+ I+      I   L   +G DN R+ V A++++D  +   
Sbjct: 243 SSSFQDNASGLDPTQLNYVRDIEQGYIKRIEAILGPVVGEDNVRAQVTADVDLDNTEQMA 302

Query: 276 IVY----DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVP---------- 321
             Y    DP + V RS   S+  Q    +Q         N P  + R +P          
Sbjct: 303 ETYRPNQDPANGVVRSTHTSESTQNKAGAQ-GGVPGALSNQPPTAPRMLPTAPAPASQQA 361

Query: 322 ----LPRSLEN-----------------TDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
                 ++  N                 +  ++   NYE++     T      + RLS+A
Sbjct: 362 AAGQNGQNAPNGQQQAAATGQAATNNVESSARDTTVNYEVDKTVRRTRAAVGIVRRLSVA 421

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           VVVN     +       +   D+ + ++N +V  A G +++RGD++ + +  F      +
Sbjct: 422 VVVNYRADGK-----TWKPLSDADMVKLNALVKDAVGYDAKRGDSVNVVNSQFSGTLPTS 476

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD--AKKGEVGGKS 478
              + +     +  +           +G L++ F  +  L R  N  +  A    VG + 
Sbjct: 477 RDDLPLWKQPEMIHYAIQAAKYGALAIGFLILVFAVIRPLIRSMNKKEELATATFVGREG 536

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
                PI +       P       +S  D  +    L     ++  +Q    +  + + N
Sbjct: 537 DDPNAPIITGAAAPAGPGLEGPSSASAADGDAVPEELPQLKQNHEFEQKLETMRRIAQQN 596

Query: 539 EERFAKILRKWARSE 553
               A ++++W   E
Sbjct: 597 PRAVAAVIKQWVSIE 611


>gi|83647861|ref|YP_436296.1| flagellar MS-ring protein [Hahella chejuensis KCTC 2396]
 gi|83635904|gb|ABC31871.1| flagellar M-ring protein FliF [Hahella chejuensis KCTC 2396]
          Length = 572

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 131/566 (23%), Positives = 243/566 (42%), Gaps = 27/566 (4%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +++           L   R L+L   +   I +  A   + N P Y  LY  + V D   
Sbjct: 20  LVENRSDMMLGFNRLSLLRQLVLMVGVAASIAMGAAIILWANEPAYQPLYPDMSVYDSTE 79

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +S  LS+ NI F++     ++ V +  V  AR+ LAA G+ +     GYEL DK    G 
Sbjct: 80  VSDILSQNNIHFKVEPKSGALLVAAEDVSAARMRLAAAGV-TQDRTIGYELLDKDQGLGS 138

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           + FM+     R LEGE+ARTI S+  +  ARVH+ +P    F +   RP+ASV++     
Sbjct: 139 SQFMESTRYRRGLEGELARTISSLRNVKNARVHLAIPKQSVFVRDKRRPSASVLVELTGS 198

Query: 183 SV--YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQ 238
                   EAI +LVA +VP +D  DVTV+D  G LL+ N +  +     +     + ++
Sbjct: 199 RSLHQDQVEAIVNLVAGSVPEMDHRDVTVVDQRGNLLSQNNLTEDDLRTSREFQYARRME 258

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR--------- 289
             +   +N  L   LG   FR+ V A+++    +  +  ++PD +  RS +         
Sbjct: 259 EVLTGRVNSILEPILGPGRFRAEVSADVDFTAVEQAQETFNPDPQAVRSEQEIGEQRIAG 318

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
            ++    + ++QP     V +              S     +K+   NYE++     T  
Sbjct: 319 SNQGVPGALSNQPPGVAAVPEQAGVAGAAANATANSQATDIRKQTVRNYEVDRTVSYTKQ 378

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
              K++RL++AVVV+  R     G    +   ++ L  +  +V  A G ++ RGD++ + 
Sbjct: 379 HQGKVQRLTVAVVVDDLRRVGADGAVTTEAWPEAELQRLTVLVRDAVGYSAARGDSVNVI 438

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
           +  F+  ++  S      +     R    +I   V  +  L++ F  +    +  +   A
Sbjct: 439 NTPFMAEEVEISDYEAPLWEQPWIRE---LIKWGVAFLIVLILVFGVIRPTFKNLSSGGA 495

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSH-SRNLQSRINSYVSKQSD 528
               +             ++ +G+   +++ L+++   +    S   + +IN+       
Sbjct: 496 DAKNLALAGDEDGLAELESLGSGVGEGESVGLNAAGDFLLPGSSEGYEKKINA------- 548

Query: 529 LRLLHMIEINEERFAKILRKWARSEI 554
             L  +I  +  R A+++R+W  ++ 
Sbjct: 549 --LKGLIAEDPGRVAQVVRQWVMADE 572


>gi|1772459|dbj|BAA14029.1| FliF [Escherichia coli W3110]
          Length = 552

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 139/568 (24%), Positives = 250/568 (44%), Gaps = 51/568 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           + +         LI+A    V +M+  A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 13  WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 71  NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +          
Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++  I+  I  
Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303
            L+  +G  N R+ V A L+  +++  E  Y P+        RS +L  ++++S +  P 
Sbjct: 249 ILSPIVGNGNIRAQVTAHLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307

Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347
                  N P  ++                       S   + ++ E SNYE++     T
Sbjct: 308 GVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
             +   ++RLS+AVVVN   L +           +  + +I  +   A G + +RGD++ 
Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLN 423

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + +  F  +   +    ++ F    +     ++ A  +L+  L+   L   A+R      
Sbjct: 424 VVNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRR 479

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
            A+  +   +   +   +  AV   L  ++ +    +NQ           R+ + V  Q 
Sbjct: 480 -AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526

Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555
             R+  M + +    A ++R+W  ++ E
Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|318605263|emb|CBY26761.1| flagellar M-ring protein FliF [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 559

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 126/538 (23%), Positives = 234/538 (43%), Gaps = 48/538 (8%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
             +  SP Y  LY  L   D   I   L++ NI +R +DNG ++ +P+  V + R+ LA 
Sbjct: 45  MLWAKSPDYRVLYSNLNDRDGGDIVTQLTQLNIPYRFADNGGALLIPADKVHETRLRLAQ 104

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
           QGLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI ++  ++  RVH+ MP
Sbjct: 105 QGLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIGTLGPVLNVRVHLAMP 162

Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
               F +    PTASV +              AI ++V+++V  L   +VTV++ TG+LL
Sbjct: 163 KPSLFVREQKSPTASVTLALQPGRALDDGQINAIVYMVSSSVAGLPPANVTVVNQTGRLL 222

Query: 218 TANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           T ++   R++    L     +++  +  I   LA  +G  N  + V A+++  +++  + 
Sbjct: 223 TQSDSAGRDLNAAQLKFTNEVENRFQRRIETILAPMVGSGNVHAQVTAQVDFASREQTDE 282

Query: 277 VYDP----DSKVERSIRLSKDAQRSET----------SQPESAVTVEQNMPHVSDRKVPL 322
            Y P    +    RS ++S   Q   T          +QP +       +P  +      
Sbjct: 283 EYKPNQAANQGAVRSQQVSTSEQLGGTNVGGVPGALSNQPSATPVAPIEVPQATPAAGAG 342

Query: 323 -------PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS 375
                    +  +  + ++ +N+E++     T      ++RLS+AVVVN G         
Sbjct: 343 AAANAAKQTATSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVNYGSDKAGK--- 399

Query: 376 ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435
                    LA++  +   A G ++ RGDT+ + +  F      +   +           
Sbjct: 400 -PIALSKDQLAQVESLTREAMGFSTVRGDTLNVVNTPFNATDDASGSNLPFWQQPSF--- 455

Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495
           F  ++N   +L+  L+   L    +R L  I   ++ +    S+ +    +    T    
Sbjct: 456 FDQLLNIGRYLLILLVAWILWRKLVRPL--IAKKQEADKAAASVNNIVQAAQTTETAKQT 513

Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
            + +AL   N          Q R+++ V  Q   R+  + + +    A ++R+W  ++
Sbjct: 514 KEELALRKKN----------QQRVSAEVQAQ---RIRELADKDPRIVALVIRQWMSND 558


>gi|86748397|ref|YP_484893.1| flagellar MS-ring protein [Rhodopseudomonas palustris HaA2]
 gi|86571425|gb|ABD05982.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris HaA2]
          Length = 532

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 142/554 (25%), Positives = 248/554 (44%), Gaps = 29/554 (5%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +  LL F K    LG  R++ + +V +  +  F      V+ P    LY  L V D + I
Sbjct: 1   MQSLLGFLKG---LGAARVMAMIAVTMALLGFFAFVIMRVSQPQMTTLYTDLSVEDSSSI 57

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    I F + ++G+ + VP   V + R+ LA           GYE+FDK ++ G T
Sbjct: 58  IKELERQAIPFEMRNDGAILMVPKDKVTRLRMKLAEG-GLPKGGGVGYEIFDKSDALGTT 116

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
           SF+Q I  +RALEGE++RTI++I  + AARVH+V+P+   F +    P+AS+++R     
Sbjct: 117 SFVQNINHLRALEGELSRTIRAIDRVQAARVHLVLPERPLFSRETPEPSASIVLRVRGAL 176

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQA--IQHEI 241
             +   AIRHLVA+AV  L    V+++D  G+LL       N    +    +    +  +
Sbjct: 177 EPQQVRAIRHLVASAVNGLKPQRVSIVDEGGQLLADGSASANAADGAAGDERRTSFEKRM 236

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
              I   +++ +G    R  V A+ + +        +DP+ +V RS +  ++  +++TS 
Sbjct: 237 RNEIEGIVSSVVGSGRARVQVTADFDYNKITQTSDKFDPEGRVLRSSQTREE--QAQTSA 294

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
            +  VTV   +P   ++      + + + K EE +NYEI+  +     +  ++ RLS+AV
Sbjct: 295 ADGQVTVNNELPG--NQAPGGAGARDQSKKSEETNNYEISRVTKTEVTEAGRVNRLSVAV 352

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           +V+     +  G      +    L  I  +V +A G + +RGD I + ++ F E      
Sbjct: 353 LVDGSYTKDEKGELVYAERPKEQLDRIAALVRSAIGFDQKRGDQIEVVNLRFAEAPQVEK 412

Query: 422 GTVQVSFMDIL---SRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
                  + +L         +I   V  V  L+V F+ +  L +                
Sbjct: 413 LPEPAGLLGMLQFTKDDIMNMIQLGVMFVLGLVVLFMVIRPLVK---------------R 457

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
           +L+  P S A     + + ++    S+      S    +++   V  QS  R+  + E N
Sbjct: 458 VLASDPASEASGLPALADGSLPQIGSDG-QAGTSMIDIAQVQGQVHAQSVHRVGELAERN 516

Query: 539 EERFAKILRKWARS 552
               A I+R+W   
Sbjct: 517 PNETAAIVRQWLAE 530


>gi|218699502|ref|YP_002407131.1| flagellar MS-ring protein [Escherichia coli IAI39]
 gi|218369488|emb|CAR17255.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           IAI39]
          Length = 552

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 138/568 (24%), Positives = 249/568 (43%), Gaps = 51/568 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           + +         LI+A    V +M+  A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 13  WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 71  NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +          
Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++  I+  I  
Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303
            L+  +G  N  + V A+L+  +++  E  Y P+        RS +L  ++++S +  P 
Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307

Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347
                  N P  ++                       S   + ++ E SNYE++     T
Sbjct: 308 GVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
             +   ++RLS+AVVVN   L +           +  + +I  +   A G + +RGD++ 
Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEALTREAMGFSEKRGDSLN 423

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + +  F  +   + G +      +       ++ A  +L+  L+   L   A+R      
Sbjct: 424 VVNSPF-NSSDESGGALPFWQQQVF---IDELLAAGRWLLVLLVAWLLWRKAVRPQLTRR 479

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
            A+  +   +   +   +  AV   L  ++ +    +NQ           R+ + V  Q 
Sbjct: 480 -AEAVKTVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526

Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555
             R+  M + +    A ++R+W  ++ E
Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|123442764|ref|YP_001006741.1| flagellar MS-ring protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089725|emb|CAL12578.1| flagellar M-ring protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 566

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 126/546 (23%), Positives = 231/546 (42%), Gaps = 57/546 (10%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
             +  SP Y  LY  L   D   I   L++ NI +R +DNG ++ +P+  V + R+ LA 
Sbjct: 45  MLWAKSPDYRVLYSNLNDRDGGDIVTQLTQLNIPYRFADNGGALLIPADKVHETRLRLAQ 104

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
           QGLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI ++  ++  RVH+ MP
Sbjct: 105 QGLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIGTLGPVLNVRVHLAMP 162

Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
               F +    PTASV +              AI ++V+++V  L   +VTV+D TG+LL
Sbjct: 163 KPSLFVREQKSPTASVTLALQPGRALDDGQINAIVYMVSSSVAGLPPANVTVVDQTGRLL 222

Query: 218 TANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           T ++   R++    L     +++  +  I   LA  +G  N  + V A+++  +++  + 
Sbjct: 223 TQSDSAGRDLNAAQLKFTNEVENRFQRRIETILAPMVGSGNVHAQVTAQVDFASREQTDE 282

Query: 277 VYDP----DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV------------ 320
            Y P    +    RS ++S   Q   T+          N P  +                
Sbjct: 283 EYKPNQAANQGAVRSQQVSTSEQLGGTNV-GGVPGALSNQPSATPVAPIEIPQATPAAGA 341

Query: 321 -------------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367
                            +  +  + ++ +N+E++     T      ++RLS+AVVVN G 
Sbjct: 342 GAAANAANRPATAARQTATSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVNYGS 401

Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVS 427
                            LA++  +   A G ++ RGDT+ + +  F      +   +   
Sbjct: 402 DKAGK----PIALSKDQLAQVESLTREAMGFSTVRGDTLNVVNTPFNATDDASGSNLPFW 457

Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISS 487
                   F  ++N   +L+  L+   L    +R L  I   ++ +    S+ +    + 
Sbjct: 458 QQPSF---FDQLLNIGRYLLILLVAWILWRKLVRPL--IAKKQEADKAAASVNNIVQAAQ 512

Query: 488 AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILR 547
              T     + +AL   N          Q R+++ V  Q   R+  + + +    A ++R
Sbjct: 513 TTETAKQTKEELALRKKN----------QQRVSAEVQAQ---RIRELADKDPRIVALVIR 559

Query: 548 KWARSE 553
           +W  ++
Sbjct: 560 QWMSND 565


>gi|91211156|ref|YP_541142.1| flagellar MS-ring protein [Escherichia coli UTI89]
 gi|215487138|ref|YP_002329569.1| flagellar MS-ring protein [Escherichia coli O127:H6 str. E2348/69]
 gi|218558795|ref|YP_002391708.1| flagellar MS-ring protein [Escherichia coli S88]
 gi|237705897|ref|ZP_04536378.1| flagellar MS-ring protein [Escherichia sp. 3_2_53FAA]
 gi|300940393|ref|ZP_07154978.1| flagellar M-ring protein FliF [Escherichia coli MS 21-1]
 gi|312967135|ref|ZP_07781353.1| flagellar M-ring protein FliF [Escherichia coli 2362-75]
 gi|91072730|gb|ABE07611.1| flagellar M-ring protein [Escherichia coli UTI89]
 gi|215265210|emb|CAS09600.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218365564|emb|CAR03291.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           S88]
 gi|226900654|gb|EEH86913.1| flagellar MS-ring protein [Escherichia sp. 3_2_53FAA]
 gi|294491623|gb|ADE90379.1| flagellar M-ring protein FliF [Escherichia coli IHE3034]
 gi|300454787|gb|EFK18280.1| flagellar M-ring protein FliF [Escherichia coli MS 21-1]
 gi|307626586|gb|ADN70890.1| flagellar MS-ring protein [Escherichia coli UM146]
 gi|312288599|gb|EFR16501.1| flagellar M-ring protein FliF [Escherichia coli 2362-75]
 gi|323952431|gb|EGB48304.1| flagellar M-ring protein FliF [Escherichia coli H252]
 gi|323956334|gb|EGB52077.1| flagellar M-ring protein FliF [Escherichia coli H263]
          Length = 552

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 138/568 (24%), Positives = 249/568 (43%), Gaps = 51/568 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           + +         LI+A    V +M+  A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 13  WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 71  NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +          
Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++  I+  I  
Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303
            L+  +G  N  + V A+L+  +++  E  Y P+        RS +L  ++++S +  P 
Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307

Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347
                  N P  ++                       S   + ++ E SNYE++     T
Sbjct: 308 GVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
             +   ++RLS+AVVVN   L +           +  + +I  +   A G + +RGD++ 
Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEALTREAMGFSEKRGDSLN 423

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + +  F  +   + G +      +       ++ A  +L+  L+   L   A+R      
Sbjct: 424 VVNSPF-NSSDESGGALPFWQQQVFIDQ---LLAAGRWLLVLLVAWLLWRKAVRPQLTRR 479

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
            A+  +   +   +   +  AV   L  ++ +    +NQ           R+ + V  Q 
Sbjct: 480 -AEAVKTVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526

Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555
             R+  M + +    A ++R+W  ++ E
Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|324114219|gb|EGC08192.1| flagellar M-ring protein FliF [Escherichia fergusonii B253]
          Length = 552

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 131/572 (22%), Positives = 252/572 (44%), Gaps = 50/572 (8%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           + L++     +  R  +++  S     + + +A   +  +P Y  L+  L   D   I  
Sbjct: 9   KSLEWLNRLRANPRIPLIVAGS---AAVAVIVALILWAKAPDYRTLFSNLSDQDGGAIVS 65

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F
Sbjct: 66  QLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQF 123

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
            +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +     
Sbjct: 124 SEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRAL 183

Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIE 242
                 AI HLV++AV  L  G+VT++D +G LLT +N   R++    L     ++  I+
Sbjct: 184 DEGQISAIVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKYASDVEGRIQ 243

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQRSET 299
             I   L+  +G  N  + V A+L+  +++  E  Y P+    ++   S+   ++++S +
Sbjct: 244 RRIEAILSPIVGNGNVHAQVTAQLDFASKEQTEEQYRPNGDQSQATLRSRQVNESEQSGS 303

Query: 300 SQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTK 343
             P        N P  ++                       S   + ++ E SNYE++  
Sbjct: 304 GYPGGVPGALSNQPAPANSAPISTPPANQNNRQQQTSTSSNSGPRSTQRNETSNYEVDRT 363

Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403
              T  +   ++RLS+AVVVN     +              + +I  +   A G + +RG
Sbjct: 364 IRHTKMNVGDVQRLSVAVVVNYKATPDGKPL----PLSAEQMKQIEDLTREAMGFSEKRG 419

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
           D++ + +  F  +   + G +      +       +++A  +L+  L+   L   A+R  
Sbjct: 420 DSLNVVNSPFNTSD-ESGGELPFWQQQVFIDQ---LLSAGRWLLVLLVAWLLWRKAVRPQ 475

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                 +  +   +   +   +  AV   L  ++ +    +NQ           R+++ +
Sbjct: 476 LTRR-VEAVKAVQQQAQARQEVEDAVEVRLSKDEQLQQRRANQ-----------RMSAEM 523

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
             Q   R+  M + +    A ++R+W  ++ E
Sbjct: 524 MSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|307312476|ref|ZP_07592110.1| flagellar M-ring protein FliF [Escherichia coli W]
 gi|306907647|gb|EFN38150.1| flagellar M-ring protein FliF [Escherichia coli W]
 gi|315061238|gb|ADT75565.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           W]
 gi|323378185|gb|ADX50453.1| flagellar M-ring protein FliF [Escherichia coli KO11]
          Length = 552

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 138/568 (24%), Positives = 251/568 (44%), Gaps = 51/568 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           + +         LI+A    V +M+  A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 13  WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R+S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 71  NIPYRVSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +          
Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++  I+  I  
Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303
            L+  +G  N  + V A+L+  +++  E  Y P+        RS +L  ++++S +  P 
Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307

Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347
                  N P  ++                       S   + ++ E SNYE++     T
Sbjct: 308 GVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
             +   ++RLS+AVVVN   L +           +  + +I  +   A G + +RGD++ 
Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLN 423

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + +  F  +   +    ++ F    +     ++ A  +L+  L+   L   A+R      
Sbjct: 424 VVNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRR 479

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
            A+  +   +   +   +  AV   L  ++ +    +NQ           R+ + V  Q 
Sbjct: 480 -AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526

Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555
             R+  M + +    A ++R+W  ++ E
Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|320175473|gb|EFW50572.1| Flagellar M-ring protein FliF [Shigella dysenteriae CDC 74-1112]
          Length = 552

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 137/568 (24%), Positives = 250/568 (44%), Gaps = 51/568 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           + +         LI+A    V +M+  A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 13  WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 71  NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +          
Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++  I+  I  
Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303
            L+  +G  N  + V A+L+  +++  E  Y P+        RS +L  ++++S +  P 
Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307

Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347
                  N P  ++                       S   + ++ E SNYE++     T
Sbjct: 308 GVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
             +   ++RLS+AVVVN   L +           +  + +I  +   A G + +RGD++ 
Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLN 423

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + +  F  +   +    ++ F    +     ++ A  +L+  L+   L   A+R      
Sbjct: 424 VVNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTSR 479

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
            A+  +   +   +   +  AV   L  ++ +    +NQ           R+ + +  Q 
Sbjct: 480 -AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEIMSQ- 526

Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555
             R+  M + +    A ++R+W  ++ E
Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|312973845|ref|ZP_07788017.1| flagellar M-ring protein FliF [Escherichia coli 1827-70]
 gi|310332440|gb|EFP99675.1| flagellar M-ring protein FliF [Escherichia coli 1827-70]
          Length = 552

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 136/567 (23%), Positives = 249/567 (43%), Gaps = 49/567 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           + +         LI+A    V +M+  A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 13  WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 71  NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +          
Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQAIQHEIEMNINK 247
            AI HLV++AV  L  G+VT++D  G LLT  N   R++    L     ++  I+  I  
Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQFNTSGRDLNDAQLKYASDVEGRIQRRIEA 248

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQRSETSQPES 304
            L+  +G  N  + V A+L+  +++  E  Y P+    ++   S+   ++++S +  P  
Sbjct: 249 ILSPIVGKGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGG 308

Query: 305 AVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIATT 348
                 N P  ++                       S   + ++ E SNYE++     T 
Sbjct: 309 VPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTK 368

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
            +   ++RLS+AVVVN   L +           +  + +I  +   A G + +RGD++ +
Sbjct: 369 MNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLNV 424

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
            +  F  +   +    ++ F    +     ++ A  +L+  L+   L   A+R       
Sbjct: 425 VNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRR- 479

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
           A+  +   +   +   +  AV   L  ++ +    +NQ           R+ + V  Q  
Sbjct: 480 AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ-- 526

Query: 529 LRLLHMIEINEERFAKILRKWARSEIE 555
            R+  M + +    A ++R+W  ++ E
Sbjct: 527 -RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|110642044|ref|YP_669774.1| flagellar MS-ring protein [Escherichia coli 536]
 gi|191173305|ref|ZP_03034835.1| flagellar M-ring protein FliF [Escherichia coli F11]
 gi|110343636|gb|ABG69873.1| flagellar M-ring protein [Escherichia coli 536]
 gi|190906422|gb|EDV66031.1| flagellar M-ring protein FliF [Escherichia coli F11]
          Length = 552

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 138/568 (24%), Positives = 248/568 (43%), Gaps = 51/568 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           + +         LI+A    V +M+  A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 13  WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 71  NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +          
Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++  I+  I  
Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303
            L+  +G  N  + V A+L+  +++  E  Y P+        RS +L  ++++S +  P 
Sbjct: 249 ILSPIVGNGNIHAQVSAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307

Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347
                  N P  ++                       S   + ++ E SNYE++     T
Sbjct: 308 GVPGALSNQPAPANNAPISTPPTNQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
             +   ++RLS+AVVVN   L +           +  + +I  +   A G + +RGD++ 
Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEALTREAMGFSEKRGDSLN 423

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + +  F  +   + G +              ++ A  +L+  L+   L   A+R      
Sbjct: 424 VVNSPF-NSSDESGGALPFWQQQAFIDQ---LLAAGRWLLVLLVAWLLWRKAVRPQLTRR 479

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
            A+  +   +   +   +  AV   L  ++ +    +NQ           R+ + V  Q 
Sbjct: 480 -AEAVKTVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526

Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555
             R+  M + +    A ++R+W  ++ E
Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|323977881|gb|EGB72967.1| flagellar M-ring protein FliF [Escherichia coli TW10509]
          Length = 552

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 135/567 (23%), Positives = 250/567 (44%), Gaps = 49/567 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           + +         LI+A    V +M+  A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 13  WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 71  NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +          
Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++  I+  I  
Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQRSETSQPES 304
            L+  +G  N  + V A+L+  +++  E  Y P+    ++   S+   ++++S +  P  
Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDKSQAALRSRQLNESEQSGSGYPGG 308

Query: 305 AVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIATT 348
                 N P  ++                       +   + ++ E SNYE++     T 
Sbjct: 309 VPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNNGPRSTQRNETSNYEVDRTIRHTK 368

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
            +   ++RLS+AVVVN   L +           +  + +I  +   A G + +RGD++ +
Sbjct: 369 MNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLNV 424

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
            +  F  +   + G +      +       +++A  +L+  L+   L   A+R       
Sbjct: 425 VNSPF-NSSDESGGELPFWQQQVFIDQ---LLSAGRWLLVLLVAWLLWRKAVRPQLTRR- 479

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
           A+  +   +   +   +  AV   L  ++ +    +NQ           R+ + V  Q  
Sbjct: 480 AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ-- 526

Query: 529 LRLLHMIEINEERFAKILRKWARSEIE 555
            R+  M + +    A ++R+W  ++ E
Sbjct: 527 -RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|260868531|ref|YP_003234933.1| flagellar basal-body MS-ring and collar protein FliF [Escherichia
           coli O111:H- str. 11128]
 gi|257764887|dbj|BAI36382.1| flagellar basal-body MS-ring and collar protein FliF [Escherichia
           coli O111:H- str. 11128]
 gi|323180809|gb|EFZ66349.1| flagellar M-ring protein FliF [Escherichia coli 1180]
          Length = 552

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 136/567 (23%), Positives = 251/567 (44%), Gaps = 49/567 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           + +         LI+A    V +M+  A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 13  WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R+S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 71  NIPYRVSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFREQVN 128

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +          
Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++  I+  I  
Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQRSETSQPES 304
            L+  +G  N  + V A+L+  +++  E  Y P+    ++   S+   ++++S +  P  
Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGG 308

Query: 305 AVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIATT 348
                 N P  ++                       S   + ++ E SNYE++     T 
Sbjct: 309 VPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTK 368

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
            +   ++RLS+AVVVN   L +           +  + +I  +   A G + +RGD++ +
Sbjct: 369 MNVGDVQRLSVAVVVNYKTLPDGK----PVPLSNEQMKQIEDLTREAMGFSEKRGDSLNV 424

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
            +  F  +   +    ++ F    +     ++ A  +L+  L+   L   A+R       
Sbjct: 425 VNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRR- 479

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
           A+  +   +   +   +  AV   L  ++ +    +NQ           R+ + V  Q  
Sbjct: 480 AEAMKAVQQQAQAHEEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ-- 526

Query: 529 LRLLHMIEINEERFAKILRKWARSEIE 555
            R+  M + +    A ++R+W  ++ E
Sbjct: 527 -RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|324005863|gb|EGB75082.1| flagellar M-ring protein FliF [Escherichia coli MS 57-2]
          Length = 552

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 134/576 (23%), Positives = 255/576 (44%), Gaps = 50/576 (8%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           A+  + L++     +  +  +++  S     + + +A   +  +P Y  L+  L   D  
Sbjct: 5   AVQTKSLEWLNRLRANPKIPLIVAGS---AAVAVMVALILWAKAPDYRTLFSNLSDQDGG 61

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG
Sbjct: 62  AIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFG 119

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           ++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  + 
Sbjct: 120 ISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLP 179

Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQ 238
                     AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++
Sbjct: 180 GRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVE 239

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQ 295
             I+  I   L+  +G  N  + V A+L+  +++  E  Y P+    ++   S+   +++
Sbjct: 240 GRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESE 299

Query: 296 RSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYE 339
           +S +  P        N P  ++                       S   + ++ E SNYE
Sbjct: 300 QSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYE 359

Query: 340 INTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN 399
           ++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G +
Sbjct: 360 VDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFS 415

Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA 459
            +RGD++ + +  F  ++       ++ F    +     ++ A  +L+  L+   L   A
Sbjct: 416 EKRGDSLNVVNSPFNSSE---ESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKA 471

Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519
           +R       A+  +   +   +   +  AV   L  ++ +    +NQ           R+
Sbjct: 472 VRPQLTRR-AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RL 519

Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
            + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 520 GAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|26248206|ref|NP_754246.1| flagellar MS-ring protein [Escherichia coli CFT073]
 gi|227885633|ref|ZP_04003438.1| flagellar MS-ring protein [Escherichia coli 83972]
 gi|300975548|ref|ZP_07173059.1| flagellar M-ring protein FliF [Escherichia coli MS 45-1]
 gi|301050702|ref|ZP_07197563.1| flagellar M-ring protein FliF [Escherichia coli MS 185-1]
 gi|306814239|ref|ZP_07448405.1| flagellar MS-ring protein [Escherichia coli NC101]
 gi|26108610|gb|AAN80813.1|AE016762_66 Flagellar M-ring protein [Escherichia coli CFT073]
 gi|227837206|gb|EEJ47672.1| flagellar MS-ring protein [Escherichia coli 83972]
 gi|300297625|gb|EFJ54010.1| flagellar M-ring protein FliF [Escherichia coli MS 185-1]
 gi|300410317|gb|EFJ93855.1| flagellar M-ring protein FliF [Escherichia coli MS 45-1]
 gi|305852398|gb|EFM52849.1| flagellar MS-ring protein [Escherichia coli NC101]
 gi|307553951|gb|ADN46726.1| flagellar M-ring protein FliF [Escherichia coli ABU 83972]
 gi|315290255|gb|EFU49633.1| flagellar M-ring protein FliF [Escherichia coli MS 153-1]
          Length = 552

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 138/568 (24%), Positives = 248/568 (43%), Gaps = 51/568 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           + +         LI+A    V +M+  A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 13  WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 71  NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +          
Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++  I+  I  
Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303
            L+  +G  N  + V A+L+  +++  E  Y P+        RS +L  ++++S +  P 
Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307

Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347
                  N P  ++                       S   + ++ E SNYE++     T
Sbjct: 308 GVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
             +   ++RLS+AVVVN   L +           +  + +I  +   A G + +RGD++ 
Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEALTREAMGFSEKRGDSLN 423

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + +  F  +   + G +              ++ A  +L+  L+   L   A+R      
Sbjct: 424 VVNSPF-NSSDESGGALPFWQQQAFIDQ---LLAAGRWLLVLLVAWLLWRKAVRPQLTRR 479

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
            A+  +   +   +   +  AV   L  ++ +    +NQ           R+ + V  Q 
Sbjct: 480 -AEAVKTVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526

Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555
             R+  M + +    A ++R+W  ++ E
Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|238751780|ref|ZP_04613268.1| Flagellar M-ring protein [Yersinia rohdei ATCC 43380]
 gi|238710051|gb|EEQ02281.1| Flagellar M-ring protein [Yersinia rohdei ATCC 43380]
          Length = 564

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 126/544 (23%), Positives = 229/544 (42%), Gaps = 55/544 (10%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
             +  SP Y  LY  L   D   I   L++ NI +R +D+G ++ +P+  V + R+ LA 
Sbjct: 45  MLWAKSPDYRVLYSNLSDRDGGDIVTQLTQLNIPYRFADSGGALLIPADKVHETRLRLAQ 104

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
           QGLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI ++  ++  RVH+ MP
Sbjct: 105 QGLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIGTLGPVLNVRVHLAMP 162

Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
               F +    PTASV +              AI ++V+++V  L   +VTV+D TG+LL
Sbjct: 163 KPSLFVREQKSPTASVTLALQPGRALDDGQINAIVYMVSSSVAGLPPANVTVVDQTGRLL 222

Query: 218 TANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           T ++   R++    L     +++  +  I   LA  +G  N  + V A+++  +++  + 
Sbjct: 223 TQSDSAGRDLNAAQLKFTNEVENRFQRRIETILAPMVGSGNVHAQVTAQVDFASREQTDE 282

Query: 277 VYDP----DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV------------ 320
            Y P    +    RS ++S   Q   ++          N P  +                
Sbjct: 283 EYKPNQSANQGAVRSAQISTSEQLGGSNV-GGVPGALSNQPSATPVAPIEVTQPAGANNA 341

Query: 321 -----------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369
                          +  +  + ++ +NYE++     T      ++RLS+AVVVN G   
Sbjct: 342 NAAARPAATPAARSTATSSNSRHDQTTNYEVDRTIRHTQQQAGMVQRLSVAVVVNYGSDK 401

Query: 370 EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFM 429
                          LA++  +   A G ++ RGDT+ + +  F          +     
Sbjct: 402 AGK----PIALTKDQLAQVESLTREAMGFSTNRGDTLNVVNTPFNATDDTTGRALPFWQQ 457

Query: 430 DILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAV 489
                 F  ++NA  +L+  L+   L    +R +    +    +    S+ S    +   
Sbjct: 458 QSF---FDQLLNAGRYLLILLVTWILWRKLVRPMLAKKNV--ADKAAASVNSMVQAAQVT 512

Query: 490 TTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549
            T     + +AL   N          Q RI++ V  Q   R+  + + +    A ++R+W
Sbjct: 513 ETVKQSKEELALRKKN----------QQRISAEVQAQ---RIRELADKDPRVVALVIRQW 559

Query: 550 ARSE 553
             ++
Sbjct: 560 MSND 563


>gi|15802373|ref|NP_288399.1| flagellar MS-ring protein [Escherichia coli O157:H7 EDL933]
 gi|15831931|ref|NP_310704.1| flagellar MS-ring protein [Escherichia coli O157:H7 str. Sakai]
 gi|168751866|ref|ZP_02776888.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4113]
 gi|168758251|ref|ZP_02783258.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4401]
 gi|168764438|ref|ZP_02789445.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4501]
 gi|168771544|ref|ZP_02796551.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4486]
 gi|168777364|ref|ZP_02802371.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4196]
 gi|168783334|ref|ZP_02808341.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4076]
 gi|168790304|ref|ZP_02815311.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC869]
 gi|168802284|ref|ZP_02827291.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC508]
 gi|195939244|ref|ZP_03084626.1| flagellar MS-ring protein [Escherichia coli O157:H7 str. EC4024]
 gi|208810543|ref|ZP_03252419.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4206]
 gi|208817037|ref|ZP_03258157.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820542|ref|ZP_03260862.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4042]
 gi|209395809|ref|YP_002271054.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4115]
 gi|217328740|ref|ZP_03444821.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           TW14588]
 gi|254793588|ref|YP_003078425.1| flagellar MS-ring protein [Escherichia coli O157:H7 str. TW14359]
 gi|261227567|ref|ZP_05941848.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261254609|ref|ZP_05947142.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           O157:H7 str. FRIK966]
 gi|12516042|gb|AAG56953.1|AE005416_7 flagellar biosynthesis; basal-body MS(membrane and
           supramembrane)-ring and collar protein [Escherichia coli
           O157:H7 str. EDL933]
 gi|13362145|dbj|BAB36100.1| flagellar hook-basal body MS ring protein FliF [Escherichia coli
           O157:H7 str. Sakai]
 gi|187767394|gb|EDU31238.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4196]
 gi|188014158|gb|EDU52280.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999271|gb|EDU68257.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4076]
 gi|189354893|gb|EDU73312.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4401]
 gi|189359720|gb|EDU78139.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365550|gb|EDU83966.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370217|gb|EDU88633.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC869]
 gi|189375710|gb|EDU94126.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC508]
 gi|208725059|gb|EDZ74766.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4206]
 gi|208731380|gb|EDZ80069.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740665|gb|EDZ88347.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4042]
 gi|209157209|gb|ACI34642.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4115]
 gi|209766878|gb|ACI81751.1| flagellar hook-basal body MS ring protein FliF [Escherichia coli]
 gi|209766880|gb|ACI81752.1| flagellar hook-basal body MS ring protein FliF [Escherichia coli]
 gi|209766882|gb|ACI81753.1| flagellar hook-basal body MS ring protein FliF [Escherichia coli]
 gi|209766886|gb|ACI81755.1| flagellar hook-basal body MS ring protein FliF [Escherichia coli]
 gi|217318087|gb|EEC26514.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           TW14588]
 gi|254592988|gb|ACT72349.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           O157:H7 str. TW14359]
 gi|320191912|gb|EFW66559.1| Flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC1212]
 gi|326342348|gb|EGD66129.1| Flagellar M-ring protein FliF [Escherichia coli O157:H7 str. 1044]
 gi|326344853|gb|EGD68600.1| Flagellar M-ring protein FliF [Escherichia coli O157:H7 str. 1125]
          Length = 552

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 135/567 (23%), Positives = 249/567 (43%), Gaps = 49/567 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           + +         LI+A    V +M+  A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 13  WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 71  NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +          
Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIVQAIQHEIEMNINK 247
            AI HLV++AV  L  G+VT++D  G LLT +    R++    L     ++  I+  I  
Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSWRDLNDAQLKYASDVEGRIQRRIEA 248

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQRSETSQPES 304
            L+  +G  N  + V A+L+  +++  E  Y P+    ++   S+   ++++S +  P  
Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGG 308

Query: 305 AVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIATT 348
                 N P  ++                       S   + ++ E SNYE++     T 
Sbjct: 309 VPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTK 368

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
            +   ++RLS+AVVVN   L +           +  + +I  +   A G + +RGD++ +
Sbjct: 369 MNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLNV 424

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
            +  F  +   +    ++ F    +     ++ A  +L+  L+   L   A+R       
Sbjct: 425 VNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRR- 479

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
           A+  +   +   +   +  AV   L  ++ +    +NQ           R+ + V  Q  
Sbjct: 480 AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ-- 526

Query: 529 LRLLHMIEINEERFAKILRKWARSEIE 555
            R+  M + +    A ++R+W  ++ E
Sbjct: 527 -RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|157158866|ref|YP_001463240.1| flagellar MS-ring protein [Escherichia coli E24377A]
 gi|157080896|gb|ABV20604.1| flagellar M-ring protein FliF [Escherichia coli E24377A]
          Length = 552

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 139/568 (24%), Positives = 249/568 (43%), Gaps = 51/568 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           + +         LI+A    V +M+  A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 13  WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 71  NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE++RTI +I  +  ARVH+ MP    F +    P+ASV I  +          
Sbjct: 129 YQRALEGELSRTIATIGPVKGARVHLAMPKPSLFVREQKSPSASVTINLLPGRALDEGQI 188

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++  I+  I  
Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303
            L+  +G  N  + V A+L+  +++  E  Y P+        RS +L  ++++S +  P 
Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307

Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347
                  N P  ++                       S   + ++ E SNYE++     T
Sbjct: 308 GVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
             +   ++RLS+AVVVN   L +           +  + +I  +   A G + +RGD++ 
Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLN 423

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + +  F  +   +    ++ F    +     ++ A  +L+  L+   L   A+R      
Sbjct: 424 VVNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRR 479

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
            A+  +   +   +   +  AV   L  ++ +    +NQ           R+ + V  Q 
Sbjct: 480 -AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526

Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555
             R+  M + +    A ++R+W  ++ E
Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|256017869|ref|ZP_05431734.1| flagellar MS-ring protein [Shigella sp. D9]
 gi|332278895|ref|ZP_08391308.1| flagellar basal-body MS-ring and collar protein [Shigella sp. D9]
 gi|332101247|gb|EGJ04593.1| flagellar basal-body MS-ring and collar protein [Shigella sp. D9]
          Length = 552

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 137/568 (24%), Positives = 250/568 (44%), Gaps = 51/568 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           + +         LI+A    V +M+  A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 13  WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R+S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 71  NIPYRVSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +          
Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247
            AI HLV++AV  L  G+VT++D  G LLT +    R++    L     ++  I+  I  
Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSSTSGRDLNDAQLKYASDVEGRIQRRIEA 248

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303
            L+  +G  N  + V A+L+  +++  E  Y P+        RS +L  ++++S +  P 
Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307

Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347
                  N P  ++                       S   + ++ E SNYE++     T
Sbjct: 308 GVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
             +   ++RLS+AVVVN   L +           +  + +I  +   A G + +RGD++ 
Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLN 423

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + +  F  +   +    ++ F    +     ++ A  +L+  L+   L   A+R      
Sbjct: 424 VVNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRR 479

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
            A+  +   +   +   +  AV   L  ++ +    +NQ           R+ + V  Q 
Sbjct: 480 -AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526

Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555
             R+  M + +    A ++R+W  ++ E
Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|312946531|gb|ADR27358.1| flagellar MS-ring protein [Escherichia coli O83:H1 str. NRG 857C]
          Length = 552

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 134/576 (23%), Positives = 253/576 (43%), Gaps = 50/576 (8%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           A+  + L++     +  +  +++  S     + + +A   +  +P Y  L+  L   D  
Sbjct: 5   AVQTKSLEWLNRLRANPKIPLIVAGS---AAVAVMVALILWAKAPDYRTLFSNLSDQDGG 61

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG
Sbjct: 62  AIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFG 119

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           ++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  + 
Sbjct: 120 ISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLP 179

Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQ 238
                     AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++
Sbjct: 180 GRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVE 239

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQ 295
             I+  I   L+  +G  N  + V A+L+  +++  E  Y P+    ++   S+   +++
Sbjct: 240 GRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESE 299

Query: 296 RSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYE 339
           +S +  P        N P  ++                       S   + ++ E SNYE
Sbjct: 300 QSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYE 359

Query: 340 INTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN 399
           ++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G +
Sbjct: 360 VDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFS 415

Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA 459
            +RGD++ + +  F  +   + G +              ++ A  +L+  L+   L   A
Sbjct: 416 EKRGDSLNVVNSPF-NSSDESGGALPFWQQQAFIDQ---LLAAGRWLLVLLVAWLLWRKA 471

Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519
           +R       A+  +   +   +   +  AV   L  ++ +    +NQ           R+
Sbjct: 472 VRPQLTRR-AEAVKTVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RL 519

Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
            + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 520 GAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|323961982|gb|EGB57581.1| flagellar M-ring protein FliF [Escherichia coli H489]
          Length = 552

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 136/567 (23%), Positives = 250/567 (44%), Gaps = 49/567 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           + +         LI+A    V +M+  A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 13  WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKTPDYRTLFSNLSDQDGGAIVSQLTQM 70

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 71  NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +          
Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++  I+  I  
Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQRSETSQPES 304
            L+  +G  N  + V A+L+  +++  E  Y P+    ++   S+   ++++S +  P  
Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGG 308

Query: 305 AVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIATT 348
                 N P  ++                       S   + ++ E SNYE++     T 
Sbjct: 309 VPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTK 368

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
            +   ++RLS+AVVVN   L +           +  + +I  +   A G + +RGD++ +
Sbjct: 369 MNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLNV 424

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
            +  F  ++       ++ F    +     ++ A  +L+  L+   L   A+R       
Sbjct: 425 VNSPFNSSE---ESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRR- 479

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
           A+  +   +   +   +  AV   L  ++ +    +NQ           R+ + V  Q  
Sbjct: 480 AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ-- 526

Query: 529 LRLLHMIEINEERFAKILRKWARSEIE 555
            R+  M + +    A ++R+W  ++ E
Sbjct: 527 -RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|307131589|ref|YP_003883605.1| flagellar M-ring protein fliF [Dickeya dadantii 3937]
 gi|306529118|gb|ADM99048.1| Flagellar M-ring protein fliF [Dickeya dadantii 3937]
          Length = 573

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 128/587 (21%), Positives = 239/587 (40%), Gaps = 66/587 (11%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
             F +    L     + L       I + +A   +   P Y  LY  L   D   I   L
Sbjct: 13  KSFGEILNRLRANPKIPLLIASAATIAIVVALSLWARGPDYRVLYTNLNERDGGSIVSEL 72

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
            + NI +R +++G++I +PS  V + R+ LA QGLP   +  G+EL D+   FG++ F +
Sbjct: 73  GKMNIPYRFTESGAAIMIPSDKVYETRLKLAQQGLPKGGA-VGFELLDQE-KFGISQFSE 130

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
           +I   RALEGE+ART++++  I  ARVH+ +P    F +    P+A+V +          
Sbjct: 131 QINYQRALEGELARTMETLGPIQNARVHLAIPKPSLFVREQKSPSAAVTVTLQPGRALDD 190

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMN 244
               AI +LV+++V  L    VTV+D TGKLLT N+   R++    L     ++   +  
Sbjct: 191 SQISAITYLVSSSVAGLPADKVTVVDQTGKLLTQNDSSGRDLNAAQLKYANEVESNYQRR 250

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE------ 298
           I   L   +G  N  + V A+++  +++  +  Y P+    ++   S+   +S+      
Sbjct: 251 IEAILTPVVGAGNVHAQVTAQIDFASREQTDEQYQPNQTPNQAAVRSQQNSQSDQRGGPN 310

Query: 299 --------TSQPESAVTVEQNMPH-----------------------VSDRKVPLPRSLE 327
                   ++ P  A T   + P                         +        +  
Sbjct: 311 VGGVPGALSNTPTPAPTAPISTPPANNANNANNANNANNANANTAGTNTQTSAGNAANQT 370

Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE 387
              + ++  NYE++     T  +   ++RLS+AVVVN  +  +    + +    D  L +
Sbjct: 371 YNSRHDQTINYEVDRTIRHTKQNTGNVQRLSVAVVVNYTQGEDGKPAALN----DDQLKK 426

Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447
           I  +V  + G ++ RGDT+ + +  F    + ++   ++ F    +  F  +     +L+
Sbjct: 427 IEALVRESMGFSNDRGDTLNVVNTPFT---ITDATGGELPFWQKQA-FFDLLTEVGRWLL 482

Query: 448 GTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQD 507
             ++   L    +R         +      + L        VT   M  +          
Sbjct: 483 VLIVGWILYRKLVRPQLQRRAQVQEAAEAAASLRGQDADVTVTLSTMEEE---------- 532

Query: 508 IFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
                R  + R ++ +  Q   R+  + E +    A ++R W  +E+
Sbjct: 533 ---LQRKSEQRAHAEMHSQ---RVRELAENDPRVVALVIRHWMSNEL 573


>gi|74312478|ref|YP_310897.1| flagellar MS-ring protein [Shigella sonnei Ss046]
 gi|73855955|gb|AAZ88662.1| flagellar basal-body MS(membrane and supramembrane)-ring and collar
           protein [Shigella sonnei Ss046]
 gi|323168943|gb|EFZ54623.1| flagellar M-ring protein FliF [Shigella sonnei 53G]
          Length = 552

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 137/568 (24%), Positives = 249/568 (43%), Gaps = 51/568 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           + +         LI+A    V +M+  A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 13  WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +  S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 71  NIPYCFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +          
Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++  I+  I  
Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303
            L+  +G  N  + V A+L+  +++  E  Y P+        RS +L  ++++S +  P 
Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307

Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347
                  N P  ++                       S   + ++ E SNYE++     T
Sbjct: 308 GVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
             +   ++RLS+AVVVN   L +           +  + +I  +   A G + +RGD++ 
Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLN 423

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + +  F  +   +    ++ F    +     ++ A  +L+  L+   L   A+R      
Sbjct: 424 VVNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRR 479

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
            A+  +   +   +   +  AV   L  ++ +    +NQ           R+ + V  Q 
Sbjct: 480 -AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526

Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555
             R+  M + +    A ++R+W  ++ E
Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|193066388|ref|ZP_03047436.1| flagellar M-ring protein FliF [Escherichia coli E22]
 gi|194429948|ref|ZP_03062458.1| flagellar M-ring protein FliF [Escherichia coli B171]
 gi|301327725|ref|ZP_07220930.1| flagellar M-ring protein FliF [Escherichia coli MS 78-1]
 gi|192925973|gb|EDV80619.1| flagellar M-ring protein FliF [Escherichia coli E22]
 gi|194412037|gb|EDX28349.1| flagellar M-ring protein FliF [Escherichia coli B171]
 gi|300845725|gb|EFK73485.1| flagellar M-ring protein FliF [Escherichia coli MS 78-1]
 gi|320198628|gb|EFW73228.1| Flagellar M-ring protein FliF [Escherichia coli EC4100B]
 gi|323158583|gb|EFZ44597.1| flagellar M-ring protein FliF [Escherichia coli E128010]
 gi|323183922|gb|EFZ69309.1| flagellar M-ring protein FliF [Escherichia coli 1357]
          Length = 552

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 138/568 (24%), Positives = 249/568 (43%), Gaps = 51/568 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           + +         LI+A    V +M+  A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 13  WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 71  NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE++RTI +I  +  ARVH+ MP    F +    P+ASV +  +          
Sbjct: 129 YQRALEGELSRTIATIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++  I+  I  
Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303
            L+  +G  N  + V A+L+  +++  E  Y P+        RS +L  ++++S +  P 
Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307

Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347
                  N P  ++                       S   + ++ E SNYE++     T
Sbjct: 308 GVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
             +   ++RLS+AVVVN   L +           +  + +I  +   A G + +RGD++ 
Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLN 423

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + +  F  +   +    ++ F    +     ++ A  +L+  L+   L   A+R      
Sbjct: 424 VVNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRR 479

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
            A+  +   +   +   +  AV   L  ++ +    +NQ           R+ + V  Q 
Sbjct: 480 -AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526

Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555
             R+  M + +    A ++R+W  ++ E
Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|320194349|gb|EFW68980.1| Flagellar M-ring protein FliF [Escherichia coli WV_060327]
          Length = 552

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 138/568 (24%), Positives = 248/568 (43%), Gaps = 51/568 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           + +         LI+A    V +M+  A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 13  WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 71  NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +          
Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++  I+  I  
Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303
            L+  +G  N  + V A+L+  +++  E  Y P+        RS +L  ++++S +  P 
Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307

Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347
                  N P  ++                       S   + ++ E SNYE++     T
Sbjct: 308 GVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
             +   ++RLS+AVVVN   L             +  + +I  +   A G + +RGD++ 
Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPGGKPL----PLSNEQMKQIEALTREAMGFSEKRGDSLN 423

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + +  F  +   + G +      +       ++ A  +L+  L+   L   A+R      
Sbjct: 424 VVNSPF-NSSDESGGALPFWQQQVFIDQ---LLAAGRWLLVLLVAWLLWRKAVRPQLTRR 479

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
            A+  +   +   +   +  AV   L  ++ +    +NQ           R+ + V  Q 
Sbjct: 480 -AEAVKTVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526

Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555
             R+  M + +    A ++R+W  ++ E
Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|331653350|ref|ZP_08354355.1| flagellar M-ring protein FliF [Escherichia coli M718]
 gi|331049448|gb|EGI21520.1| flagellar M-ring protein FliF [Escherichia coli M718]
          Length = 552

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 136/567 (23%), Positives = 247/567 (43%), Gaps = 49/567 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           + +         LI+A    V +M+  A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 13  WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 71  NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +          
Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQAIQHEIEMNINK 247
            AI HLV++AV  L  G+VT++D  G LLT  N   R++    L     ++  I+  I  
Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQFNTSGRDLNDAQLKYASDVEGRIQRRIEA 248

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQRSETSQPES 304
            L+  +G  N  + V A+L+  +++  E  Y P+    ++   S+   ++++S +  P  
Sbjct: 249 ILSPIVGKGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGG 308

Query: 305 AVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIATT 348
                 N P  ++                       S   + ++ E SNYE++     T 
Sbjct: 309 VPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTK 368

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
            +   ++RLS+AVVVN   L +           +  + +I  +   A G + +RGD++ +
Sbjct: 369 MNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLNV 424

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
            +  F  +   + G +              ++ A  +L+  L+   L   A+R       
Sbjct: 425 VNSPF-NSSDESGGELPFWQQQAFVDQ---LLAAGRWLLVLLVAWLLWRKAVRPQLTRR- 479

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
           A+  +   +   +   +  AV   L  ++ +    +NQ           R+ + V  Q  
Sbjct: 480 AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ-- 526

Query: 529 LRLLHMIEINEERFAKILRKWARSEIE 555
            R+  M + +    A ++R+W  ++ E
Sbjct: 527 -RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|218689933|ref|YP_002398145.1| flagellar MS-ring protein [Escherichia coli ED1a]
 gi|291283115|ref|YP_003499933.1| Flagellar M-ring protein FliF precursor [Escherichia coli O55:H7
           str. CB9615]
 gi|293415248|ref|ZP_06657891.1| flagellar M-ring protein FliF [Escherichia coli B185]
 gi|301644603|ref|ZP_07244592.1| flagellar M-ring protein FliF [Escherichia coli MS 146-1]
 gi|331677820|ref|ZP_08378495.1| flagellar M-ring protein FliF [Escherichia coli H591]
 gi|209766884|gb|ACI81754.1| flagellar hook-basal body MS ring protein FliF [Escherichia coli]
 gi|218427497|emb|CAR08270.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           ED1a]
 gi|290762988|gb|ADD56949.1| Flagellar M-ring protein FliF precursor [Escherichia coli O55:H7
           str. CB9615]
 gi|291432896|gb|EFF05875.1| flagellar M-ring protein FliF [Escherichia coli B185]
 gi|301077078|gb|EFK91884.1| flagellar M-ring protein FliF [Escherichia coli MS 146-1]
 gi|320641786|gb|EFX11174.1| flagellar MS-ring protein [Escherichia coli O157:H7 str. G5101]
 gi|320647145|gb|EFX15978.1| flagellar MS-ring protein [Escherichia coli O157:H- str. 493-89]
 gi|320652429|gb|EFX20727.1| flagellar MS-ring protein [Escherichia coli O157:H- str. H 2687]
 gi|320658031|gb|EFX25793.1| flagellar MS-ring protein [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320658603|gb|EFX26297.1| flagellar MS-ring protein [Escherichia coli O55:H7 str. USDA 5905]
 gi|320668501|gb|EFX35328.1| flagellar MS-ring protein [Escherichia coli O157:H7 str. LSU-61]
 gi|331074280|gb|EGI45600.1| flagellar M-ring protein FliF [Escherichia coli H591]
          Length = 552

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 136/567 (23%), Positives = 250/567 (44%), Gaps = 49/567 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           + +         LI+A    V +M+  A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 13  WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 71  NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +          
Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++  I+  I  
Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQRSETSQPES 304
            L+  +G  N  + V A+L+  +++  E  Y P+    ++   S+   ++++S +  P  
Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGG 308

Query: 305 AVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIATT 348
                 N P  ++                       S   + ++ E SNYE++     T 
Sbjct: 309 VPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTK 368

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
            +   ++RLS+AVVVN   L +           +  + +I  +   A G + +RGD++ +
Sbjct: 369 MNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLNV 424

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
            +  F  +   +    ++ F    +     ++ A  +L+  L+   L   A+R       
Sbjct: 425 VNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRR- 479

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
           A+  +   +   +   +  AV   L  ++ +    +NQ           R+ + V  Q  
Sbjct: 480 AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ-- 526

Query: 529 LRLLHMIEINEERFAKILRKWARSEIE 555
            R+  M + +    A ++R+W  ++ E
Sbjct: 527 -RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|191168288|ref|ZP_03030081.1| flagellar M-ring protein FliF [Escherichia coli B7A]
 gi|190901660|gb|EDV61416.1| flagellar M-ring protein FliF [Escherichia coli B7A]
          Length = 552

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 136/567 (23%), Positives = 250/567 (44%), Gaps = 49/567 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           + +         LI+A    V +M+  A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 13  WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVNQLTQM 70

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 71  NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +          
Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++  I+  I  
Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQRSETSQPES 304
            L+  +G  N  + V A+L+  +++  E  Y P+    ++   S+   ++++S +  P  
Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGG 308

Query: 305 AVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIATT 348
                 N P  ++                       S   + ++ E SNYE++     T 
Sbjct: 309 VPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTK 368

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
            +   ++RLS+AVVVN   L +           +  + +I  +   A G + +RGD++ +
Sbjct: 369 MNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLNV 424

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
            +  F  +   +    ++ F    +     ++ A  +L+  L+   L   A+R       
Sbjct: 425 VNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRR- 479

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
           A+  +   +   +   +  AV   L  ++ +    +NQ           R+ + V  Q  
Sbjct: 480 AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ-- 526

Query: 529 LRLLHMIEINEERFAKILRKWARSEIE 555
            R+  M + +    A ++R+W  ++ E
Sbjct: 527 -RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|218549263|ref|YP_002383054.1| flagellar MS-ring protein [Escherichia fergusonii ATCC 35469]
 gi|218356804|emb|CAQ89432.1| flagellar basal-body MS-ring and collar protein [Escherichia
           fergusonii ATCC 35469]
 gi|325497680|gb|EGC95539.1| flagellar MS-ring protein [Escherichia fergusonii ECD227]
          Length = 552

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 131/572 (22%), Positives = 252/572 (44%), Gaps = 50/572 (8%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           + L++     +  R  +++  S     + + +A   +  +P Y  L+  L   D   I  
Sbjct: 9   KSLEWLNRLRANPRIPLIVAGS---AAVAVIVALILWAKAPDYRTLFSNLSDQDGGAIVS 65

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F
Sbjct: 66  QLTQMNIPYRFSEVSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQF 123

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
            +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +     
Sbjct: 124 SEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRAL 183

Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIE 242
                 AI HLV++AV  L  G+VT++D +G LLT +N   R++    L     ++  I+
Sbjct: 184 DEGQISAIVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKYASDVEGRIQ 243

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQRSET 299
             I   L+  +G  N  + V A+L+  +++  E  Y P+    ++   S+   ++++S +
Sbjct: 244 RRIEAILSPIVGNGNVHAQVTAQLDFASKEQTEEQYRPNGDQSQATLRSRQVNESEQSGS 303

Query: 300 SQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTK 343
             P        N P  ++                       S   + ++ E SNYE++  
Sbjct: 304 GYPGGVPGALSNQPAPANSAPISTPPANQNNRQQQTSTSSNSGPRSTQRNETSNYEVDRT 363

Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403
              T  +   ++RLS+AVVVN     +              + +I  +   A G + +RG
Sbjct: 364 IRHTKMNVGDVQRLSVAVVVNYKATPDGKPL----PLSAEQMKQIEDLTREAMGFSEKRG 419

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
           D++ + +  F  +   + G +      +       +++A  +L+  L+   L   A+R  
Sbjct: 420 DSLNVVNSPFNTSD-ESGGELPFWQQQVFIDQ---LLSAGRWLLVLLVAWLLWRKAVRPQ 475

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                 +  +   +   +   +  AV   L  ++ +    +NQ           R+++ +
Sbjct: 476 LTRR-VEAVKAVQQQAQARQEVEDAVEVRLSKDEQLQQRRANQ-----------RMSAEM 523

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
             Q   R+  M + +    A ++R+W  ++ E
Sbjct: 524 MSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|323948358|gb|EGB44345.1| flagellar M-ring protein FliF [Escherichia coli H120]
          Length = 552

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 136/567 (23%), Positives = 251/567 (44%), Gaps = 49/567 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           + +         LI+A    V +M+  A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 13  WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R+S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 71  NIPYRVSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +          
Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++  I+  I  
Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQRSETSQPES 304
            L+  +G  N  + V A+L+  +++  E  Y P+    ++   S+   ++++S +  P  
Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGG 308

Query: 305 AVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIATT 348
                 N P  ++                       S   + ++ E SNYE++     T 
Sbjct: 309 VPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTK 368

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
            +   ++RLS+AVVVN   L +           +  + +I  +   A G + +RGD++ +
Sbjct: 369 MNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLNV 424

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
            +  F  +   +    ++ F    +     ++ A  +L+  L+   L   A+R       
Sbjct: 425 VNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRR- 479

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
           A+  +   +   +   +  AV   L  ++ +    +NQ           R+ + V  Q  
Sbjct: 480 AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ-- 526

Query: 529 LRLLHMIEINEERFAKILRKWARSEIE 555
            R+  M + +    A ++R+W  ++ E
Sbjct: 527 -RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|331683490|ref|ZP_08384091.1| flagellar M-ring protein FliF [Escherichia coli H299]
 gi|331079705|gb|EGI50902.1| flagellar M-ring protein FliF [Escherichia coli H299]
          Length = 552

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 134/573 (23%), Positives = 253/573 (44%), Gaps = 52/573 (9%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           + L++     +  +  +++  S     + + +A   +  +P Y  L+  L   D   I  
Sbjct: 9   KSLEWLNRLRANPKIPLIVTGS---AAVAVMVALILWAKTPDYRTLFSNLSDQDGGAIVS 65

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F
Sbjct: 66  QLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQF 123

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
            +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +     
Sbjct: 124 SEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRAL 183

Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIE 242
                 AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++  I+
Sbjct: 184 DKGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQ 243

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSE 298
             I   L+  +G  N  + V A+L+  +++  E  Y P+        RS +L  ++++S 
Sbjct: 244 RRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSG 302

Query: 299 TSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINT 342
           +  P        N P  ++                       S   + ++ E SNYE++ 
Sbjct: 303 SGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDR 362

Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402
               T  +   ++RLS+AVVVN   L +           +  + +I  +   A G + +R
Sbjct: 363 TIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEALTREAMGFSEKR 418

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           GD++ + +  F  +   +    ++ F    +     ++ A  +L+  L+   L   A+R 
Sbjct: 419 GDSLNVVNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRP 474

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
                 A+  +   +   +   +  AV   L  ++ +    +NQ           R+ + 
Sbjct: 475 QLTRR-AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAE 522

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           V  Q   R+  + + +    A ++R+W  ++ E
Sbjct: 523 VMSQ---RIREISDNDPRVVALVIRQWINNDHE 552


>gi|300818642|ref|ZP_07098850.1| flagellar M-ring protein FliF [Escherichia coli MS 107-1]
 gi|300528814|gb|EFK49876.1| flagellar M-ring protein FliF [Escherichia coli MS 107-1]
          Length = 552

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 136/567 (23%), Positives = 251/567 (44%), Gaps = 49/567 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           + +         LI+A    V +M+  A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 13  WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R+S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 71  NIPYRVSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +          
Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++  I+  I  
Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQRSETSQPES 304
            L+  +G  N  + V A+L+  +++  E  Y P+    ++   S+   ++++S +  P  
Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGG 308

Query: 305 AVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIATT 348
                 N P  ++                       S   + ++ E SNYE++     T 
Sbjct: 309 VPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTK 368

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
            +   ++RLS+AVVVN   L +           +  + +I  +   A G + +RGD++ +
Sbjct: 369 MNVGDVQRLSVAVVVNYKTLPDGK----PVPLSNEQMKQIEDLTREAMGFSEKRGDSLNV 424

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
            +  F  +   +    ++ F    +     ++ A  +L+  L+   L   A+R       
Sbjct: 425 VNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRR- 479

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
           A+  +   +   +   +  AV   L  ++ +    +NQ           R+ + V  Q  
Sbjct: 480 AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ-- 526

Query: 529 LRLLHMIEINEERFAKILRKWARSEIE 555
            R+  M + +    A ++R+W  ++ E
Sbjct: 527 -RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|238798572|ref|ZP_04642049.1| Flagellar M-ring protein [Yersinia mollaretii ATCC 43969]
 gi|238717592|gb|EEQ09431.1| Flagellar M-ring protein [Yersinia mollaretii ATCC 43969]
          Length = 572

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 131/551 (23%), Positives = 236/551 (42%), Gaps = 61/551 (11%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
             +  SP Y  LY  L   D   I   L++ NI +R +DNG ++ +P+  V + R+ LA 
Sbjct: 45  MLWAKSPDYRVLYSNLSDRDGGEIVTQLTQLNIPYRFADNGGALLIPAEKVHETRLRLAQ 104

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
           QGLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI ++  ++  RVH+ MP
Sbjct: 105 QGLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIGTLGPVLNVRVHLAMP 162

Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
               F +    PTASV +              AI ++V+++V  L  G+VTV+D TG+LL
Sbjct: 163 KPSLFVREQKSPTASVTLALQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLL 222

Query: 218 TANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           T ++   R++    L     +++  +  I   LA  +G  N  + V A+++  +++  + 
Sbjct: 223 TQSDSAGRDLNAAQLKFTNEVENRFQRRIETILAPMVGNGNVHAQVTAQVDFASREQTDE 282

Query: 277 VYDPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMP---HVSDRKVPLP------- 323
            Y P+    +    S+    SE    S          N P    V+  +VP P       
Sbjct: 283 EYKPNQAANQGAVRSQQTSNSEQLGGSNVGGVPGALSNQPSATPVAPIEVPQPAPAAGAA 342

Query: 324 ---------------------RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
                                 +  +  + ++ +N+E++     T      ++RLS+AVV
Sbjct: 343 GATANNANAANRPAATTAARSTATSSNSRHDQTTNFEVDRTIRHTQQQAGIVQRLSVAVV 402

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           VN G                  LA++  +   A G ++ RGDT+ + +  F      +  
Sbjct: 403 VNYGSDKAGK----PVALSKDQLAQVESLTREAMGFSTDRGDTLNVVNTPFNATDDGSGS 458

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482
           ++           F  ++NA  +L+  L+   L    +R +  I   +  +    S+ S 
Sbjct: 459 SLPFWQQQSF---FDQLLNAGRYLLILLVAWILWRKLVRPM--ITKKQIADKAAASVNSM 513

Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542
              +    T     + +AL   N          Q R+++ V  Q   R+  + + +    
Sbjct: 514 VQTAQTAETVKQSKEELALRKKN----------QQRVSAEVQAQ---RIRELADKDPRIV 560

Query: 543 AKILRKWARSE 553
           A ++R+W  ++
Sbjct: 561 ALVIRQWMSND 571


>gi|299068777|emb|CBJ40017.1| FliF: Flagellar biosynthesis protein, M-ring protein, Belongs to
           the fliF family [Ralstonia solanacearum CMR15]
          Length = 611

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 132/555 (23%), Positives = 240/555 (43%), Gaps = 49/555 (8%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
             +  +P Y  LY  +  SD   I  AL + N+ +R +D GS+I VP + V +AR+ LAA
Sbjct: 65  TLWSRAPDYRVLYSNVADSDGGAIIAALQQMNVPYRFADGGSAIMVPEANVHEARLKLAA 124

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
           QGLP     +G+EL +    FG + F++++   RALEGE+ARTIQ++  + +ARVH+ + 
Sbjct: 125 QGLPKGGL-AGFELME-NQKFGTSQFVEQVNYQRALEGELARTIQAMQEVQSARVHLALS 182

Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
               F +   +P+ASV+++     +      +AI HL+A++VP+L + +VTV+D +G+LL
Sbjct: 183 KPSVFVREQVKPSASVLLKLYPGRMLDRSQVQAIGHLLASSVPDLPLANVTVVDQSGRLL 242

Query: 218 TA--NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           +A   +    +    L+ V+ I+      I   L   LG DN R+ V A++++D  +   
Sbjct: 243 SAAFQDNASGLDPTQLNYVRDIEQGYIKRIEAILGPVLGDDNVRAQVTADVDLDNTEQMA 302

Query: 276 IVY----DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPL--------- 322
             Y    DP +   RS   S+  Q    +Q         N P  + R +P          
Sbjct: 303 ETYRPNQDPANGAVRSTHTSESTQNKAGAQ-GGVPGALSNQPPTAPRMLPTAPAPAAQQA 361

Query: 323 -----------------------PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
                                    +   +  ++  +NYE++     T      + RLS+
Sbjct: 362 AAGQNGQNGQNGQQQGAAGTGQAAANSVESSARDITTNYEVDKTVRRTRAAVGTVRRLSV 421

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AVVVN     +       +   D+ + ++N +V  A G +++RGD++ + +  F      
Sbjct: 422 AVVVNYRADGK-----TWKPLSDAEMTKLNALVKDAVGYDAKRGDSVNVVNSQFSGTLPT 476

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL-RRLHNIDDAKKGEVGGKS 478
           +   + +     +  +           +G L++ F  +  L R ++  D+       G+ 
Sbjct: 477 SKDDLPLWKQPEMIHYAIQAAKYGALAIGFLILVFAVIRPLIRSMNKKDEPATATFVGRE 536

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
              P              +     S++ D       L     S   +Q    +  + + N
Sbjct: 537 GEDPNAPIITGAAAPAGPELEGPSSASIDGDDIPEELPQLKQSRDFEQKLETMRRVAQQN 596

Query: 539 EERFAKILRKWARSE 553
               A ++++W  +E
Sbjct: 597 PRAVAAVIKQWVSNE 611


>gi|300923899|ref|ZP_07139914.1| flagellar M-ring protein FliF [Escherichia coli MS 182-1]
 gi|300419862|gb|EFK03173.1| flagellar M-ring protein FliF [Escherichia coli MS 182-1]
          Length = 552

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 136/567 (23%), Positives = 251/567 (44%), Gaps = 49/567 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           + +         LI+A    V +M+  A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 13  WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R+S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 71  NIPYRVSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +          
Sbjct: 129 YQRALEGELSRTIETIGPVKEARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++  I+  I  
Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQRSETSQPES 304
            L+  +G  N  + V A+L+  +++  E  Y P+    ++   S+   ++++S +  P  
Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGG 308

Query: 305 AVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIATT 348
                 N P  ++                       S   + ++ E SNYE++     T 
Sbjct: 309 VPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTK 368

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
            +   ++RLS+AVVVN   L +           +  + +I  +   A G + +RGD++ +
Sbjct: 369 MNVGDVQRLSVAVVVNYKTLPDGK----PVPLSNEQMKQIEDLTREAMGFSEKRGDSLNV 424

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
            +  F  +   +    ++ F    +     ++ A  +L+  L+   L   A+R       
Sbjct: 425 VNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRR- 479

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
           A+  +   +   +   +  AV   L  ++ +    +NQ           R+ + V  Q  
Sbjct: 480 AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ-- 526

Query: 529 LRLLHMIEINEERFAKILRKWARSEIE 555
            R+  M + +    A ++R+W  ++ E
Sbjct: 527 -RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|260844337|ref|YP_003222115.1| flagellar basal-body MS-ring and collar protein FliF [Escherichia
           coli O103:H2 str. 12009]
 gi|257759484|dbj|BAI30981.1| flagellar basal-body MS-ring and collar protein FliF [Escherichia
           coli O103:H2 str. 12009]
          Length = 552

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 138/568 (24%), Positives = 249/568 (43%), Gaps = 51/568 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           + +         LI+A    V +M+  A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 13  WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 71  NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE++RTI +I  +  ARVH+ MP    F +    P+ASV +  +          
Sbjct: 129 YQRALEGELSRTIATIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++  I+  I  
Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303
            L+  +G  N  + V A+L+  +++  E  Y P+        RS +L  ++++S +  P 
Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307

Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347
                  N P  ++                       S   + ++ E SNYE++     T
Sbjct: 308 GVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
             +   ++RLS+AVVVN   L +           +  + +I  +   A G + +RGD++ 
Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMMQIEDLTREAMGFSEKRGDSLN 423

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + +  F  +   +    ++ F    +     ++ A  +L+  L+   L   A+R      
Sbjct: 424 VVNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRR 479

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
            A+  +   +   +   +  AV   L  ++ +    +NQ           R+ + V  Q 
Sbjct: 480 -AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526

Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555
             R+  M + +    A ++R+W  ++ E
Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|323968354|gb|EGB63761.1| flagellar M-ring protein FliF [Escherichia coli M863]
 gi|327253070|gb|EGE64724.1| flagellar M-ring protein FliF [Escherichia coli STEC_7v]
          Length = 552

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 135/567 (23%), Positives = 250/567 (44%), Gaps = 49/567 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           + +         LI+A    V +M+  A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 13  WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 71  NIPYRFSEASGAIEVPAEKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE++RTI++I  +  ARVH+ +P    F +    P+ASV +  +          
Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLALPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++  I+  I  
Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQRSETSQPES 304
            L+  +G  N  + V A+L+  +++  E  Y P+    ++   S+   ++++S +  P  
Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDKSQAALRSRQLNESEQSGSGYPGG 308

Query: 305 AVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIATT 348
                 N P  ++                       S   + ++ E SNYE++     T 
Sbjct: 309 VPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTK 368

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
            +   ++RLS+AVVVN   L +           +  + +I  +   A G + +RGD++ +
Sbjct: 369 MNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLNV 424

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
            +  F  +   + G +      +       +++A  +L+  L+   L   A+R       
Sbjct: 425 VNSPF-NSSDESGGELPFWQQQVFIDQ---LLSAGRWLLVLLVAWLLWRKAVRPQLTRR- 479

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
           A+  +   +   +   +  AV   L  ++ +    +NQ           R+ + V  Q  
Sbjct: 480 AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ-- 526

Query: 529 LRLLHMIEINEERFAKILRKWARSEIE 555
            R+  M + +    A ++R+W  ++ E
Sbjct: 527 -RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|238794015|ref|ZP_04637633.1| Flagellar M-ring protein [Yersinia intermedia ATCC 29909]
 gi|238726647|gb|EEQ18183.1| Flagellar M-ring protein [Yersinia intermedia ATCC 29909]
          Length = 572

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 127/552 (23%), Positives = 231/552 (41%), Gaps = 63/552 (11%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
             +  SP Y  LY  L   D   I   L++ NI +R +DNG ++ +P+  V + R+ LA 
Sbjct: 45  MLWAKSPDYRVLYSNLNDRDGGDIVTQLTQLNIPYRFADNGGALLIPADKVHETRLRLAQ 104

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
           QGLP   +  G+EL D+   FG++ F +++   RALEGE++RTI ++  ++  RVH+ MP
Sbjct: 105 QGLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELSRTISTLGPVMNVRVHLAMP 162

Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
               F +    PTASV +              AI ++V+++V  L  G+VTV+D TG+LL
Sbjct: 163 KPSLFVREQKSPTASVTLALQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLL 222

Query: 218 TANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           T ++   R++    L     +++  +  I   LA  +G  N  + V A+++  +++  + 
Sbjct: 223 TQSDSAGRDLNAAQLKFTNEVENRFQRRIETILAPMVGNGNVHAQVTAQVDFASREQTDE 282

Query: 277 VYDPDS----KVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV------------ 320
            Y P+        RS ++S   Q   T+          N P  +                
Sbjct: 283 EYKPNQAADKGAVRSQQVSTSEQLGGTNV-GGVPGALSNQPSATPVAPIETPQATPAAGA 341

Query: 321 -------------------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
                                  +  +  + ++ +N+E++     T      ++RLS+AV
Sbjct: 342 AGATANNANAANRPATTTAAKSTATSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAV 401

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           VVN G                  LA++  +   A G ++ RGDT+ + +  F      + 
Sbjct: 402 VVNYGSDKAGK----PVALTKDQLAQVESLTREAMGFSTDRGDTLNVVNTPFSATDDASG 457

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
            T+           F  ++NA  +L+  L+   L    +R +         +    SI +
Sbjct: 458 NTLPFWQQQSF---FDQMLNAGRYLLILLVAWILWRKLVRPMMAKKQV--ADKAAASINN 512

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
               + A        + +AL   N          Q R+++ V  Q   R+  + + +   
Sbjct: 513 IVQTAVASENAKQSKEELALRKKN----------QQRVSAEVQAQ---RIRELADKDPRV 559

Query: 542 FAKILRKWARSE 553
            A ++R+W  ++
Sbjct: 560 VALVIRQWMSND 571


>gi|170024616|ref|YP_001721121.1| flagellar MS-ring protein [Yersinia pseudotuberculosis YPIII]
 gi|169751150|gb|ACA68668.1| flagellar M-ring protein FliF [Yersinia pseudotuberculosis YPIII]
          Length = 570

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 130/550 (23%), Positives = 235/550 (42%), Gaps = 61/550 (11%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
             +  SP Y  LY  L   D   I   L++ NI +R +DNG ++ +P+  V + R+ LA 
Sbjct: 45  MLWAKSPDYRVLYSNLSDRDGGDIVTQLTQLNIPYRFADNGGALLIPAEKVHETRLRLAQ 104

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
           QGLP   +  G+EL D+   FG++ F ++I   RALEGE++RTI ++  ++  RVH+ MP
Sbjct: 105 QGLPKGGA-VGFELLDQE-KFGISQFSEQINYQRALEGELSRTIGTLGPVLNVRVHLAMP 162

Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
               F +    PTASV +              AI ++V+++V  L  G+VTV+D TG+LL
Sbjct: 163 KPSLFVREQKSPTASVTLALQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLL 222

Query: 218 TANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           T ++   R++    L     +++  +  I   LA  +G  N  + V A+++  +++  + 
Sbjct: 223 TQSDSAGRDLNASQLKFTSEVENRYQRRIENILAPMVGNGNVHAQVTAQVDFASREQTDE 282

Query: 277 VYDP----DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV---PLP------ 323
            Y P    +    RS ++S   Q   T+          N P V+       P P      
Sbjct: 283 EYKPNQAANQGAVRSQQVSTSEQLGGTNV-GGVPGALSNQPPVAPIAPIEIPQPAGAAAN 341

Query: 324 --------------------RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
                               ++  +  + ++ +N+E++     T      ++RLS+AVVV
Sbjct: 342 NAAPANAAATANANTTATAAKASSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVV 401

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           N                    LA++  +   A G ++ RGDT+ + +  F  +      +
Sbjct: 402 NYTSDKAGK----PIALSKDQLAQVESLTREAMGFSTVRGDTLNVVNTPFTASDDTRGSS 457

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
           +           F  ++NA  +L+  L+   L    LR +         +    S+ +  
Sbjct: 458 LPFWQQQSF---FDQLLNAGRYLLILLVAWILWRKLLRPMLAKKQV--ADKAAASVNNIV 512

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
             + A  T     + +AL   N          Q R+++ V  Q   R+  + + +    A
Sbjct: 513 QTAQAAETVKQSKEELALRKKN----------QQRVSAEVQAQ---RIRELADKDPRVVA 559

Query: 544 KILRKWARSE 553
            ++R+W  ++
Sbjct: 560 LVIRQWMSND 569


>gi|331657984|ref|ZP_08358946.1| flagellar M-ring protein FliF [Escherichia coli TA206]
 gi|331056232|gb|EGI28241.1| flagellar M-ring protein FliF [Escherichia coli TA206]
          Length = 552

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 135/573 (23%), Positives = 249/573 (43%), Gaps = 52/573 (9%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           + L++     +  +  +++  S     + + +A   +  +P Y  L+  L   D   I  
Sbjct: 9   KSLEWLNRLRANPKIPLIVTGS---AAVAVMVALILWAKAPDYRTLFSNLSDQDGGAIVS 65

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F
Sbjct: 66  QLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQF 123

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
            +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +     
Sbjct: 124 SEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRAL 183

Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIE 242
                 AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++  I+
Sbjct: 184 DEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQ 243

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSE 298
             I   L+  +G  N  + V A+L+  +++  E  Y P+        RS +L  ++++S 
Sbjct: 244 RRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSG 302

Query: 299 TSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINT 342
           +  P        N P  ++                       S   + ++ E SNYE++ 
Sbjct: 303 SGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDR 362

Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402
               T  +   ++RLS+AVVVN   L +           +  + +I  +   A G + +R
Sbjct: 363 TIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEALTREAMGFSEKR 418

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           GD++ + +  F  +   + G +              ++ A  +L+  L+   L   A+R 
Sbjct: 419 GDSLNVVNSPF-NSSDESGGALPFWQQQAFIDQ---LLAAGRWLLVLLVAWLLWRKAVRP 474

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
                      V  ++      +  AV   L  ++ +    +NQ           R+ + 
Sbjct: 475 QLTRRAQAVKAVQQQAQAREE-VEDAVEVRLSKDEQLQQRRANQ-----------RLGAE 522

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 523 VMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|193222343|emb|CAL62027.2| Flagellar M-ring protein [Herminiimonas arsenicoxydans]
          Length = 562

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 133/573 (23%), Positives = 237/573 (41%), Gaps = 59/573 (10%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
           +       R  +L   +   I + +    +   P Y  L+      D   I  +L  AN+
Sbjct: 17  NMAKSPNGRKFLLMVGVAAVIAVMIGLVLWGQKPEYRVLFSNFSDRDGGAIMTSLQAANV 76

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
            ++ ++ G +I VP+  V + R+ LAA+GLP   S  G+EL +     G++ F++++   
Sbjct: 77  PYKFAEGGGAILVPADKVHEIRLKLAAEGLPKGGS-VGFELME-NQKLGVSQFLEQVNFQ 134

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS--VYKSAEA 190
           RALEGE+AR+IQS+  + AARVH+ +P    F +   +PTASV++          +   A
Sbjct: 135 RALEGELARSIQSVGAVQAARVHLALPKASVFVRDQQKPTASVLLNLHAGRFLDQQQVSA 194

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLSIVQAIQHEIEMNINK 247
           I HLVA++VP L   +VT++D  G LL+ N        +    L  VQ +Q  I   I  
Sbjct: 195 IVHLVASSVPELSPKNVTIVDQAGNLLSENNKPAGTNTLDPSQLKYVQELQQNIAKRIES 254

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV----ERSIRLSKDAQRSE----- 298
            +   +G++N R+   A+++  T +    +Y P+        RS + S+    S      
Sbjct: 255 IITPIVGLNNVRAEATADVDFSTSEQAAEIYKPNQVPSSATVRSQQTSESTNGSNNATGV 314

Query: 299 ----TSQPESAVTVEQNMPHVSDRKVPLPRSLENTD--------------KKEEQSNYEI 340
               T+QP  A T   N    +      P +                   +++  +NYE+
Sbjct: 315 PGALTNQPAPAATAPLNTTPQTTAAPGTPGAPGTPGAPAATATAPQATPIQRDTTTNYEV 374

Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400
           +            L+RLS+AVVVN  R+    G+ +     +    +I  +V  A G N 
Sbjct: 375 DKTIRYVQQPMGGLKRLSVAVVVNYKRVVGKDGKVSFLPLTEIEKTQITDLVREAMGYNK 434

Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460
            RGDT+ + +  F  +    +  + +             +    +L+  +++  L    L
Sbjct: 435 DRGDTLNVVNSPFAGSNKEEAPKLPLWERPEA---IDMGMQGAKYLLLGIVLLILYFKVL 491

Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520
           + L N              L+PPP++    +G        L+     +  H  + Q  + 
Sbjct: 492 KPLLNK-------------LNPPPLALTDESGQPVGMAQELEEEVGPMGIHMHSYQQNLE 538

Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
           +            +   + +  A I++ W  +E
Sbjct: 539 AA---------KELARQDPKVVANIVKAWVGNE 562


>gi|315296472|gb|EFU55769.1| flagellar M-ring protein FliF [Escherichia coli MS 16-3]
          Length = 552

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 137/568 (24%), Positives = 247/568 (43%), Gaps = 51/568 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           + +         LI+A    V +M+  A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 13  WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R S+   +I VP+  V + R+ L  QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 71  NIPYRFSEASGAIEVPADKVHELRLRLTQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +          
Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRTLDEGQI 188

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++  I+  I  
Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303
            L+  +G  N  + V A+L+  +++  E  Y P+        RS +L  ++++S +  P 
Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307

Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347
                  N P  ++                       S   + ++ E SNYE++     T
Sbjct: 308 GVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
             +   ++RLS+AVVVN   L +           +  + +I  +   A G + +RGD++ 
Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEALTREAMGFSEKRGDSLN 423

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + +  F  +   + G +              ++ A  +L+  L+   L   A+R      
Sbjct: 424 VVNSPF-NSSDESGGALPFWQQQAFIDQ---LLAAGRWLLVLLVAWLLWRKAVRPQLTRR 479

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
            A+  +   +   +   +  AV   L  ++ +    +NQ           R+ + V  Q 
Sbjct: 480 -AEAVKTVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526

Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555
             R+  M + +    A ++R+W  ++ E
Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|320182746|gb|EFW57630.1| Flagellar M-ring protein FliF [Shigella boydii ATCC 9905]
          Length = 552

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 135/567 (23%), Positives = 241/567 (42%), Gaps = 49/567 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           + +         LI+A    V +M+  A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 13  WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 71  NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +          
Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++  I+  I  
Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQRSETSQPES 304
            L+  +G  N  + V A+L+  +++  E  Y P+    ++   S+   ++++S +  P  
Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGG 308

Query: 305 AVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIATT 348
                 N P  ++                       S   + ++ E SNYE++     T 
Sbjct: 309 VPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTK 368

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
            +   ++RLS+AVVVN   L +           +  + +I  +   A G + +RGD++ +
Sbjct: 369 MNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLNV 424

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
            +  F  +               + +  A     LV LV  LL        L R      
Sbjct: 425 VNSPFNSSDESGGELPFWQQQAFIDQLLAAGRWLLVLLVAWLLWRKTVRPQLTRRAEAMK 484

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
           A + +   +       +  AV   L  ++ +    +NQ + +   +              
Sbjct: 485 AVQQQAQAREE-----VEDAVEVRLSKDEQLQQRRANQRLGTEVMS-------------- 525

Query: 529 LRLLHMIEINEERFAKILRKWARSEIE 555
            R+  M + +    A ++R+W  ++ E
Sbjct: 526 QRIREMSDNDPRVVALVIRQWINNDHE 552


>gi|78047554|ref|YP_363729.1| flagellar MS-ring protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78035984|emb|CAJ23675.1| flagellar biosynthesis lipoprotein FliF [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 574

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 115/568 (20%), Positives = 232/568 (40%), Gaps = 28/568 (4%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++  Q+F    SL  TR L + ++I + +   +A  F+   P Y +LY  L+       +
Sbjct: 15  EKAGQWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAA 74

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L  A I ++I     +ISVP   +  AR+ LA  GL    +  G+EL +K   FG++ 
Sbjct: 75  DLLRTAQIPYKIDQATGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQ 134

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           F++      ALE E++RTI ++  +  ARVH+ +P   +F +     +ASV++       
Sbjct: 135 FVENARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQG 194

Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240
            +    +AI +LVA+++P++    VTV+D +G++L+  +   +          V+  +  
Sbjct: 195 LERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESS 254

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I + L    G          +++    +    +Y+ +    RS ++S  +  +   
Sbjct: 255 YNQRIRELLEPMTGPGRVNPETSVDMDFSVVEEARELYNGEPAKLRSEQVSDTSTSATG- 313

Query: 301 QPESAVTVEQNMPHV--------------SDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346
            P+       N P                +        +      K    NYE++     
Sbjct: 314 -PQGPPGATSNSPGQPPAPAVAGAPGTPAAANGQAAAPATPTESSKSATRNYELDRTLQH 372

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
           T     +++R+S+AV+++        G+  +Q    + L  I  +V  A G ++ RGDT+
Sbjct: 373 TRQPAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQAVGFDAARGDTV 432

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
           ++ +  F+   +      +             V N L  LVG ++V  L    +R     
Sbjct: 433 SVMNAPFVREAVAGEEGPKWWEDP-------RVQNGLRLLVGAVVVLALLFGVVRPTLRQ 485

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
                     +          +    ++  D+  +    +D     ++ ++ I    + +
Sbjct: 486 LTGVTAVKDKQGKAGKDGTPQSADVRMVDEDDDLMPRLEEDTAQIGQDKKTPIALPDAYE 545

Query: 527 SDLRL-LHMIEINEERFAKILRKWARSE 553
             +RL    ++ + +R A++++ W  SE
Sbjct: 546 ERMRLAREAVKADSKRVAQVVKGWVASE 573


>gi|209919360|ref|YP_002293444.1| flagellar MS-ring protein [Escherichia coli SE11]
 gi|293446318|ref|ZP_06662740.1| flagellar M-ring protein FliF [Escherichia coli B088]
 gi|209912619|dbj|BAG77693.1| flagellar hook-basal body MS ring protein FliF [Escherichia coli
           SE11]
 gi|291323148|gb|EFE62576.1| flagellar M-ring protein FliF [Escherichia coli B088]
          Length = 552

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 138/568 (24%), Positives = 249/568 (43%), Gaps = 51/568 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           + +         LI+A    V +M+  A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 13  WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 71  NIPYRFSEASGAIEVPAEKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE++RTI +I  +  ARVH+ MP    F +    P+ASV +  +          
Sbjct: 129 YQRALEGELSRTIATIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++  I+  I  
Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303
            L+  +G  N  + V A+L+  +++  E  Y P+        RS +L  ++++S +  P 
Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307

Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347
                  N P  ++                       S   + ++ E SNYE++     T
Sbjct: 308 GVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
             +   ++RLS+AVVVN   L +           +  + +I  +   A G + +RGD++ 
Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLN 423

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + +  F  +   +    ++ F    +     ++ A  +L+  L+   L   A+R      
Sbjct: 424 VVNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRR 479

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
            A+  +   +   +   +  AV   L  ++ +    +NQ           R+ + V  Q 
Sbjct: 480 -AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526

Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555
             R+  M + +    A ++R+W  ++ E
Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|309779486|ref|ZP_07674247.1| flagellar M-ring protein FliF [Ralstonia sp. 5_7_47FAA]
 gi|308921727|gb|EFP67363.1| flagellar M-ring protein FliF [Ralstonia sp. 5_7_47FAA]
          Length = 610

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 132/570 (23%), Positives = 247/570 (43%), Gaps = 49/570 (8%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           L++       + +  AA  +  +P Y  LY  +  SD   I  AL + N+ +R ++ G++
Sbjct: 51  LLMMIGGAALVAVIAAAMLWSRAPDYRVLYSNVSDSDGGAIIAALQQMNVPYRFAEGGTA 110

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP + V +AR+ LA+QGLP     +G+EL +    FG + F +++   RALEGE+ART
Sbjct: 111 IMVPEASVHEARLKLASQGLPKGG-QAGFELME-NQKFGTSQFTEQVNYQRALEGELART 168

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVP 200
           IQ++  + +ARVH+ M     F +  A+P+ASV+++     +      +AI HLV+++VP
Sbjct: 169 IQAMQEVQSARVHLAMTKPSVFVREQAKPSASVLLKLYPGRMLDRSQVQAIGHLVSSSVP 228

Query: 201 NLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNF 258
           NL + +VTV+D +G+LL+++  +    +    LS V+ ++      I   L   +G DN 
Sbjct: 229 NLPLANVTVVDQSGRLLSSSFQDNASGLDPTQLSYVRDVEQGYIKRIEAILGPVVGEDNV 288

Query: 259 RSAVVAELNMDTQQIREIVY----DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPH 314
           R+ V A++++D  +     Y    DP +   RS   ++  Q    +Q         N P 
Sbjct: 289 RAQVTADVDLDNTEQMAESYRPNQDPANAAVRSTHTAEATQNKADAQ-GGVPGALSNQPP 347

Query: 315 VSDRKVPL------------------------------PRSLENTDKKEEQSNYEINTKS 344
            + R +P                                 S  ++  ++  +NYE++   
Sbjct: 348 TAPRMLPTAPAPASASQPAATGPNGQPQQVAAANTGGTAASGNSSSTRDTTTNYEVDKTV 407

Query: 345 IATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD 404
             T      + RLS+AVVVN     +       +   ++ + ++N +V  A G +++RGD
Sbjct: 408 RRTRAAVGTVRRLSVAVVVNYRGDGK-----TWKPLSEAEMVKLNALVKDAVGFDAKRGD 462

Query: 405 TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
           ++ + +  F      +   + +     + ++       L   +G L++ F  +    R  
Sbjct: 463 SVNVVNSQFSGTLPMSKDDLPLWKQPDMIQYAIQAAKYLALAIGFLILVFAVIRPAIRSM 522

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS-RINSYV 523
              DA             P               +   ++  D       L   + N + 
Sbjct: 523 GEKDAPATPTFVGREGEDPNAPIITGAAASAGPELEGPAAGADSEELPDALPQLKNNDFE 582

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSE 553
            K   +R   + + N    A ++++W  +E
Sbjct: 583 KKLETMR--RVAQSNPRAVAAVIKQWVSNE 610


>gi|256022404|ref|ZP_05436269.1| flagellar MS-ring protein [Escherichia sp. 4_1_40B]
 gi|301029395|ref|ZP_07192489.1| flagellar M-ring protein FliF [Escherichia coli MS 196-1]
 gi|299877699|gb|EFI85910.1| flagellar M-ring protein FliF [Escherichia coli MS 196-1]
          Length = 552

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 134/573 (23%), Positives = 253/573 (44%), Gaps = 52/573 (9%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           + L++     +  +  +++  S     + + +A   +  +P Y  L+  L   D   I  
Sbjct: 9   KSLEWLNRLRANPKIPLIVTGS---AAVAVMVALILWAKTPDYRTLFSNLSDQDGGAIVS 65

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F
Sbjct: 66  QLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQF 123

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
            +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +     
Sbjct: 124 SEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRAL 183

Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIE 242
                 AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++  I+
Sbjct: 184 DEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQ 243

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSE 298
             I   L+  +G  N  + V A+L+  +++  E  Y P+        RS +L  ++++S 
Sbjct: 244 RRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSG 302

Query: 299 TSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINT 342
           +  P        N P  ++                       S   + ++ E SNYE++ 
Sbjct: 303 SGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDR 362

Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402
               T  +   ++RLS+AVVVN   L +           +  + +I  +   A G + +R
Sbjct: 363 TIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEALTREAMGFSEKR 418

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           GD++ + +  F  +   +    ++ F    +     ++ A  +L+  L+   L   A+R 
Sbjct: 419 GDSLNVVNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRP 474

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
                 A+  +   +   +   +  AV   L  ++ +    +NQ           R+ + 
Sbjct: 475 QLTRR-AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAE 522

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           V  Q   R+  + + +    A ++R+W  ++ E
Sbjct: 523 VMSQ---RIREISDNDPRVVALVIRQWINNDHE 552


>gi|323186814|gb|EFZ72134.1| flagellar M-ring protein FliF [Escherichia coli RN587/1]
          Length = 552

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 130/569 (22%), Positives = 233/569 (40%), Gaps = 53/569 (9%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           + +         LI+A    V +M+  A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 13  WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 71  NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +          
Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++  I+  I  
Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQRSETSQPES 304
            L+  +G  N  + V A+L+  +++  E  Y P+    ++   S+   ++++S +  P  
Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDETQAALRSRQLNESEQSGSGYPGG 308

Query: 305 AVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIATT 348
                 N P  ++                       S   + ++ E SNYE++     T 
Sbjct: 309 VPGALSNQPAPANNAPISTPPTNQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTK 368

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
            +   ++RLS+AVVVN   L +           +  + +I  +   A G + +RGD++ +
Sbjct: 369 MNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEALTREAMGFSEKRGDSLNV 424

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
            +  F  +   + G +                                L   R L  +  
Sbjct: 425 VNSPF-NSSDESGGALPFWQQQAFIDQL--------------------LAVGRWLLVLLV 463

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
           A                 +  T          ++ + +   S    LQ R  +       
Sbjct: 464 AWLLWRKAVRPQLTRRAEAVKTVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQRLGAEV 523

Query: 529 L--RLLHMIEINEERFAKILRKWARSEIE 555
           +  R+  M + +    A ++R+W  ++ E
Sbjct: 524 MSQRIREMSDNDPRVVALVIRQWINNDHE 552


>gi|309795955|ref|ZP_07690368.1| flagellar M-ring protein FliF [Escherichia coli MS 145-7]
 gi|308120405|gb|EFO57667.1| flagellar M-ring protein FliF [Escherichia coli MS 145-7]
          Length = 552

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 138/568 (24%), Positives = 251/568 (44%), Gaps = 51/568 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           + +         LI+A    V +M+  A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 13  WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 71  NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +          
Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            AI HLV++AV  L +G+VT++D  G LLT +N   R++    L     ++  I+  I  
Sbjct: 189 SAIVHLVSSAVAGLPLGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303
            L+  +G  N  + V A+L+  +++  E  Y P+        RS +L  ++++S +  P 
Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307

Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347
                  N P  ++                       S   + ++ E SNYE++     T
Sbjct: 308 GVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
             +   ++RLS+AVVVN   L +           +  + +I  +   A G + +RGD++ 
Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLN 423

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + +  F  +   +    ++ F    +     ++ A  +L+  L+   L   A+R      
Sbjct: 424 VVNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRR 479

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
            A+  +   +   +   +  AV   L  ++ +    +NQ           R+ + V  Q 
Sbjct: 480 -AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526

Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555
             R+  M + +    A ++R+W  ++ E
Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|134095076|ref|YP_001100151.1| flagellar MS-ring protein [Herminiimonas arsenicoxydans]
          Length = 545

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 133/565 (23%), Positives = 236/565 (41%), Gaps = 59/565 (10%)

Query: 21  RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80
           R  +L   +   I + +    +   P Y  L+      D   I  +L  AN+ ++ ++ G
Sbjct: 8   RKFLLMVGVAAVIAVMIGLVLWGQKPEYRVLFSNFSDRDGGAIMTSLQAANVPYKFAEGG 67

Query: 81  SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140
            +I VP+  V + R+ LAA+GLP   S  G+EL +     G++ F++++   RALEGE+A
Sbjct: 68  GAILVPADKVHEIRLKLAAEGLPKGGS-VGFELME-NQKLGVSQFLEQVNFQRALEGELA 125

Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS--VYKSAEAIRHLVAAA 198
           R+IQS+  + AARVH+ +P    F +   +PTASV++          +   AI HLVA++
Sbjct: 126 RSIQSVGAVQAARVHLALPKASVFVRDQQKPTASVLLNLHAGRFLDQQQVSAIVHLVASS 185

Query: 199 VPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255
           VP L   +VT++D  G LL+ N        +    L  VQ +Q  I   I   +   +G+
Sbjct: 186 VPELSPKNVTIVDQAGNLLSENNKPAGTNTLDPSQLKYVQELQQNIAKRIESIITPIVGL 245

Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKV----ERSIRLSKDAQRSE---------TSQP 302
           +N R+   A+++  T +    +Y P+        RS + S+    S          T+QP
Sbjct: 246 NNVRAEATADVDFSTSEQAAEIYKPNQVPSSATVRSQQTSESTNGSNNATGVPGALTNQP 305

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTD--------------KKEEQSNYEINTKSIATT 348
             A T   N    +      P +                   +++  +NYE++       
Sbjct: 306 APAATAPLNTTPQTTAAPGTPGAPGTPGAPAATATAPQATPIQRDTTTNYEVDKTIRYVQ 365

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
                L+RLS+AVVVN  R+    G+ +     +    +I  +V  A G N  RGDT+ +
Sbjct: 366 QPMGGLKRLSVAVVVNYKRVVGKDGKVSFLPLTEIEKTQITDLVREAMGYNKDRGDTLNV 425

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
            +  F  +    +  + +             +    +L+  +++  L    L+ L N   
Sbjct: 426 VNSPFAGSNKEEAPKLPLWERPEA---IDMGMQGAKYLLLGIVLLILYFKVLKPLLNK-- 480

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
                      L+PPP++    +G        L+     +  H  + Q  + +       
Sbjct: 481 -----------LNPPPLALTDESGQPVGMAQELEEEVGPMGIHMHSYQQNLEAA------ 523

Query: 529 LRLLHMIEINEERFAKILRKWARSE 553
                +   + +  A I++ W  +E
Sbjct: 524 ---KELARQDPKVVANIVKAWVGNE 545


>gi|218695543|ref|YP_002403210.1| flagellar MS-ring protein [Escherichia coli 55989]
 gi|218352275|emb|CAU98032.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           55989]
          Length = 552

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 134/573 (23%), Positives = 253/573 (44%), Gaps = 52/573 (9%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           + L++     +  +  +++  S     + + +A   +  +P Y  L+  L   D   I  
Sbjct: 9   KSLEWLNRLRANPKIPLIVTGS---AAVAVMVALILWAKTPDYRTLFSNLSDQDGGAIVS 65

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F
Sbjct: 66  QLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQF 123

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
            +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +     
Sbjct: 124 SEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRAL 183

Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIE 242
                 AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++  I+
Sbjct: 184 DEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQ 243

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSE 298
             I   L+  +G  N  + V A+L+  +++  E  Y P+        RS +L  ++++S 
Sbjct: 244 RRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSG 302

Query: 299 TSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINT 342
           +  P        N P  ++                       S   + ++ E SNYE++ 
Sbjct: 303 SGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDR 362

Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402
               T  +   ++RLS+AVVVN   L +           +  + +I  +   A G + +R
Sbjct: 363 TIRHTKMNEGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEALTREAMGFSEKR 418

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           GD++ + +  F  +   +    ++ F    +     ++ A  +L+  L+   L   A+R 
Sbjct: 419 GDSLNVVNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRP 474

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
                 A+  +   +   +   +  AV   L  ++ +    +NQ           R+ + 
Sbjct: 475 QLTRR-AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAE 522

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           V  Q   R+  + + +    A ++R+W  ++ E
Sbjct: 523 VMSQ---RIREISDNDPRVVALVIRQWINNDHE 552


>gi|156933442|ref|YP_001437358.1| flagellar MS-ring protein [Cronobacter sakazakii ATCC BAA-894]
 gi|156531696|gb|ABU76522.1| hypothetical protein ESA_01260 [Cronobacter sakazakii ATCC BAA-894]
          Length = 565

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 134/546 (24%), Positives = 237/546 (43%), Gaps = 59/546 (10%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +   P Y  LY  L   D   I   L++ NI +  +DNG+SI VP+  V   R+ LA QG
Sbjct: 46  WAKQPEYRVLYSNLSDQDGGAIVTQLTQMNIPYNFADNGASIMVPAEKVYDLRLRLAQQG 105

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  +  ARVH+ MP  
Sbjct: 106 LPKGGA-VGFELMDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKNARVHLAMPKP 163

Query: 162 GSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT- 218
             F +    P+ASV +              AI H+V++AV  L  G+VT++D TG+LLT 
Sbjct: 164 SLFVREQKSPSASVTLNLQPGRALDDGQVAAIVHMVSSAVAGLPPGNVTLVDQTGRLLTQ 223

Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
           +    R++    L     ++  I+  I   LA  +G  N  + V A+++   ++  E  Y
Sbjct: 224 SGTGARDLNDAQLKYASDVEGRIQRRIESILAPIVGTGNVHAQVTAQIDFSNKEQTEEQY 283

Query: 279 DPDSK----VERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRK--------------- 319
            P+S       RS +L+ + Q    + P        N P  ++                 
Sbjct: 284 RPNSDPSQMAVRSRQLNTNDQVG-GAYPGGVPGALSNQPAPANSAPIDAPAGQNNGQNAN 342

Query: 320 -----------VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368
                           S  ++ +++E +NYE++     T  +   ++RLS+AVVVN  +L
Sbjct: 343 GQNAQRTQSTSTAGASSGPHSSQRDETTNYEVDRTIRHTKMNVGDVQRLSVAVVVNYRQL 402

Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSF 428
               G           L +I  +   A G + +RGDT+ + +  F  +   +    ++ F
Sbjct: 403 ----GNGKPLALTAEQLKQIEDLTREAMGYSDKRGDTLNVVNSQFTAS---DESGGELPF 455

Query: 429 MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSA 488
               +     +++A  +LV  ++   L   A+R        +   V              
Sbjct: 456 WKQQA-FIDQLLSAGRWLVVLIVAWLLWRKAVRPQLQRRAEEVKRVQEMQ---------- 504

Query: 489 VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRK 548
                   +++ +   ++D  +  R    R+++ V  Q   R+  M + +    A ++R+
Sbjct: 505 -QQRKEVEESVEVR-LSKDEQTQQRRANQRLSAEVMSQ---RIREMSDNDPRVVALVIRQ 559

Query: 549 WARSEI 554
           W  +E+
Sbjct: 560 WMSNEL 565


>gi|324013493|gb|EGB82712.1| flagellar M-ring protein FliF [Escherichia coli MS 60-1]
          Length = 552

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 137/568 (24%), Positives = 248/568 (43%), Gaps = 51/568 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           + +         LI+A    V +M+  A   +  +P Y  L+  +   D   I   L++ 
Sbjct: 13  WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNISDQDGGAIVSQLTQM 70

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 71  NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +          
Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++  I+  I  
Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303
            L+  +G  N  + V A+L+  +++  E  Y P+        RS +L  ++++S +  P 
Sbjct: 249 ILSPIVGNGNIHAQVSAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307

Query: 304 SAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIAT 347
                  N P  ++                       S   + ++ E SNYE++     T
Sbjct: 308 GVPGALSNQPAPANNAPISTPPTNQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHT 367

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
             +   ++RLS+AVVVN   L +           +  + +I  +   A G + +RGD++ 
Sbjct: 368 KMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEALTREAMGFSEKRGDSLN 423

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + +  F  +   + G +              ++ A  +L+  L+   L   A+R      
Sbjct: 424 VVNSPF-NSSDESGGALPFWQQQAFIDQ---LLAAGRWLLVLLVAWLLWRKAVRPQLTRR 479

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
            A+  +   +   +   +  AV   L  ++ +    +NQ           R+ + V  Q 
Sbjct: 480 -AEAVKTVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ- 526

Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555
             R+  M + +    A ++R+W  ++ E
Sbjct: 527 --RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|307138605|ref|ZP_07497961.1| flagellar MS-ring protein [Escherichia coli H736]
 gi|331642559|ref|ZP_08343694.1| flagellar M-ring protein FliF [Escherichia coli H736]
 gi|331039357|gb|EGI11577.1| flagellar M-ring protein FliF [Escherichia coli H736]
          Length = 552

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 134/573 (23%), Positives = 253/573 (44%), Gaps = 52/573 (9%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           + L++     +  +  +++  S     + + +A   +  +P Y  L+  L   D   I  
Sbjct: 9   KSLEWLNRLRANPKIPLIVTGS---AAVAVMVALILWAKTPDYRTLFSNLSDQDGGAIVS 65

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F
Sbjct: 66  QLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQF 123

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
            +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +     
Sbjct: 124 SEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRAL 183

Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIE 242
                 AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++  I+
Sbjct: 184 DEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQ 243

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSE 298
             I   L+  +G  N  + V A+L+  +++  E  Y P+        RS +L  ++++S 
Sbjct: 244 RRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSG 302

Query: 299 TSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINT 342
           +  P        N P  ++                       S   + ++ E SNYE++ 
Sbjct: 303 SGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDR 362

Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402
               T  +   ++RLS+AVVVN   L +           +  + +I  +   A G + +R
Sbjct: 363 TIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEALAREAMGFSEKR 418

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           GD++ + +  F  +   +    ++ F    +     ++ A  +L+  L+   L   A+R 
Sbjct: 419 GDSLNVVNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRP 474

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
                 A+  +   +   +   +  AV   L  ++ +    +NQ           R+ + 
Sbjct: 475 QLTRR-AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RLGAE 522

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           V  Q   R+  + + +    A ++R+W  ++ E
Sbjct: 523 VMSQ---RIREISDNDPRVVALVIRQWINNDHE 552


>gi|21242698|ref|NP_642280.1| flagellar MS-ring protein [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21108171|gb|AAM36816.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 574

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 115/568 (20%), Positives = 233/568 (41%), Gaps = 28/568 (4%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++  Q+F    SL  TR L + ++I + +   +A  F+   P Y +LY  L+       +
Sbjct: 15  EKAGQWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAA 74

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L  A I ++I     +ISVP   +  AR+ LA  GL    +  G+EL +K   FG++ 
Sbjct: 75  DLLRTAQIPYKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQ 134

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           F++      ALE E++RTI ++  +  ARVH+ +P   +F +     +ASV++       
Sbjct: 135 FVENARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQG 194

Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240
            +    +AI +LVA+++P++    VTV+D +G++L+  +   +          V+  +  
Sbjct: 195 LERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESS 254

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I + L    G          +++    +    +Y+ +    RS ++S  +  +   
Sbjct: 255 YNQRIRELLEPMTGPGRVNPETSVDMDFSVVEEARELYNGEPAKLRSEQVSDTSTSATG- 313

Query: 301 QPESAVTVEQNMPHV--------------SDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346
            P+       N P                +        +      K    NYE++     
Sbjct: 314 -PQGPPGATSNSPGQPPAPAVAGAPGTPAAANGQAAAPATPTESSKSATRNYELDRTLQH 372

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
           T     +++R+S+AV+++        G+  +Q    + L  I  +V  A G ++ RGDT+
Sbjct: 373 TRQPAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQAVGFDAARGDTV 432

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
           ++ +  F+   +      +             V N L  LVG ++V  L    +R     
Sbjct: 433 SVMNAPFVREAVAGEEGPKWWEDP-------RVQNGLRLLVGAVVVLALLFGVVRPTLRQ 485

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
                     +          +    ++ +D+  +    +D     ++ ++ I    + +
Sbjct: 486 LTGVTAVKDKQGKAGKDGTPQSADVRMVDDDDDLMPRLEEDTAQIGQDKKTPIALPDAYE 545

Query: 527 SDLRL-LHMIEINEERFAKILRKWARSE 553
             +RL    ++ + +R A++++ W  SE
Sbjct: 546 ERMRLAREAVKADSKRVAQVVKGWVASE 573


>gi|283785708|ref|YP_003365573.1| flagellar M-ring protein [Citrobacter rodentium ICC168]
 gi|282949162|emb|CBG88770.1| flagellar M-ring protein [Citrobacter rodentium ICC168]
          Length = 560

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 134/575 (23%), Positives = 241/575 (41%), Gaps = 55/575 (9%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L++     +  +  ++I  S     + + +A   +  SP Y  L+  L   D   I   L
Sbjct: 14  LEWLNRLRANPKIPLIIAGS---AAVAIIVAMVLWAKSPDYRTLFSNLSDQDGGAIVTQL 70

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           ++ NI +R ++   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +
Sbjct: 71  TQMNIPYRFTEGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSE 128

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
           ++   RALEGE+ARTI+++  +  ARVH+ MP    F +    P+ASV I          
Sbjct: 129 QVNYQRALEGELARTIETLGPVRRARVHLAMPKPSLFVREQKSPSASVTINLEPGRALDE 188

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-NILGKSLSIVQAIQHEIEMN 244
               A+ HLV++AV  L  G+VT++D +G+LLT +     ++    L     +++ I+  
Sbjct: 189 GQISAVVHLVSSAVAGLPPGNVTLVDQSGRLLTQSNTSSRDLNDAQLKYASDVENRIQRR 248

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---TSQ 301
           I   L+  +G  N  + V A+L+   ++  E  Y P+    ++   S+    SE   +  
Sbjct: 249 IESILSPIVGNGNVHAQVTAQLDFANKEQTEEQYRPNGDASQAALRSRQVNESEQIGSGL 308

Query: 302 PESAVTVEQNMPHVSDRKV---------------------PLPRSLENTDKKEEQSNYEI 340
           P        N P  ++                                  ++ E SNYE+
Sbjct: 309 PGGVPGALSNQPAPANAAPITTPPANQQNAQNGQNAQQTSTNNAVGPRNTQRNETSNYEV 368

Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400
           +     T  +   ++RLS+AVVVN    ++              + +I  +   A G + 
Sbjct: 369 DRTIRHTKMNVGDIQRLSVAVVVNYKTPSDGKPL----PLTADQMKQIENLTREAMGFSD 424

Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460
           +RGDT+ + +  F      N+G V              + +A  +L+  L+   L   A+
Sbjct: 425 KRGDTLNVVNSPFSATD-ENAGEVPFWKQQFFIEQ---LFSAGRWLLVLLVGWLLWRKAV 480

Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520
           R       A++ +   +          AV   L  ++      +NQ           R+ 
Sbjct: 481 RPQLQRR-AEEAKAAREREQLRQETKEAVEVRLSKDEQTQQQRANQ-----------RLG 528

Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 529 AEVLSQ---RIREMSDNDPRVVALVIRQWMSNDHE 560


>gi|115522990|ref|YP_779901.1| flagellar MS-ring protein [Rhodopseudomonas palustris BisA53]
 gi|115516937|gb|ABJ04921.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris BisA53]
          Length = 535

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 145/554 (26%), Positives = 242/554 (43%), Gaps = 26/554 (4%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++ L+ F K    LG  R++ + +V    I  F      V +P    L+  L V D + I
Sbjct: 1   MEGLVNFLKG---LGAARLMAMIAVTAALIGFFAFVILRVTTPQMTTLFTDLSVEDSSGI 57

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    I F I + GS I VP   V + R+ LA  GLP      GYE+FDK  + G T
Sbjct: 58  IKDLERQAIPFEIRNEGSVIMVPKDKVTRLRMKLAEAGLPKGGG-VGYEIFDKSEALGST 116

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
           SF+Q I  +RALEGE+ARTI++I  I AARVH+V+P+   F +    P+AS+++R     
Sbjct: 117 SFVQNINHLRALEGELARTIRAIDRIQAARVHLVLPERPLFSRETPEPSASIVLRVRGAL 176

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEI 241
             +   AIRH+VA+AV  L    V+++D  G+LL                    A +  +
Sbjct: 177 EPQQVRAIRHVVASAVNGLKPQRVSIVDEAGQLLADGAAGDPSTEGVTGDERRAAFEKRM 236

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
              +   +++ +G    R  + A+ + +        +DP+ +V R    S++   +  + 
Sbjct: 237 RNQVEAIVSSVVGTGRARVQLTADFDYNKITQTSDKFDPEGRVLR-SSQSREESSATLNP 295

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
            +  VTV   +P          R  + + K EE +NYEI+  +     +  ++ R+S+AV
Sbjct: 296 TDGQVTVNNELPGAQGGAGAAAR--DQSKKSEETNNYEISRVTKTEVTEVGRVNRVSVAV 353

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL--- 418
           +V+        G    Q +    L  I  +V +A G + +RGD + I ++ F E      
Sbjct: 354 LVDGLYNKNDKGELVYQERSKEELDRIAALVRSAIGFDQKRGDQVEIVNLRFAEGPAVVP 413

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
            N  T  +  +         VI   V ++  ++V F+ +  L R     +          
Sbjct: 414 INEPTGILGMLKFTKDDVMYVIELGVMMLLGMVVIFMVIRPLVRRILAAEPGS------- 466

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
               P    A+T G +   ++  D         S    +++   V  QS  R+  + + N
Sbjct: 467 ----PTALPALTDGTV---SVGADGQPLPTPGPSMIDIAQVQGQVHAQSVHRVGELADRN 519

Query: 539 EERFAKILRKWARS 552
               A I+R+W + 
Sbjct: 520 PNETAAIIRQWLQE 533


>gi|300693364|ref|YP_003749337.1| flif: flagellar biosynthesis protein, m-ring protein, belongs to
           the flif family [Ralstonia solanacearum PSI07]
 gi|299075401|emb|CBJ34696.1| FliF: Flagellar biosynthesis protein, M-ring protein, Belongs to
           the fliF family [Ralstonia solanacearum PSI07]
          Length = 611

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 141/556 (25%), Positives = 246/556 (44%), Gaps = 51/556 (9%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
             +  +P+Y  LY  +  SD   I  AL + N+ +R +D GS+I VP + V +AR+ LAA
Sbjct: 65  MLWSRTPNYGVLYSNVADSDGGAIIAALQQMNVPYRFADGGSAIMVPEANVHEARLKLAA 124

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
           QGLP     +G+EL +    FG + F +++   RALEGE+ARTIQ++  + +ARVH+ + 
Sbjct: 125 QGLPKGGL-AGFELME-NQKFGTSQFAEQVNYQRALEGELARTIQAMQEVQSARVHLALS 182

Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
               F +  A+P+ASV+++     +      +AI HLV+++VPNL + +VTV+D +G+LL
Sbjct: 183 KPSVFVREQAKPSASVLLKLYPGRMLDRSQVQAIGHLVSSSVPNLPLANVTVVDQSGRLL 242

Query: 218 TAN--EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           +++  +    +    L+ V+ I+      I   L   LG DN R+ V A++++D  +   
Sbjct: 243 SSSFQDNASGLDPTQLNYVRDIEQGYIKRIEAILGPVLGEDNVRAQVTADVDLDNTEQMA 302

Query: 276 IVY----DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE---- 327
             Y    DP + V RS   S+  Q    +Q         N P  + R +P   +      
Sbjct: 303 ETYRPNQDPSNGVVRSTHTSESTQNKAGAQ-GGVPGALSNQPPSAPRMLPTAPAPASQQA 361

Query: 328 ----------------------------NTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
                                        +  ++   NYE++     T      + RLS+
Sbjct: 362 AAGQNGQNGQNGQQQAAAATGQTAANGVESSARDTTINYEVDKTVRRTRAAVGTVRRLSV 421

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AVVVN     +     A +   D+ + ++N +V  A G +++RGD++ + +  F      
Sbjct: 422 AVVVNYRADGK-----AWKPLSDAEMVKLNALVKDAVGYDAKRGDSVNVVNSQFSGTLPV 476

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD--AKKGEVGGK 477
               + +     +  +           +G L++ F  +  L R  N  D  A    VG +
Sbjct: 477 AKDDLPLWKQPEMIHYAIQAAKYGALAIGFLILVFAVIRPLIRSMNKKDEHAAATFVGRE 536

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
                 PI +       P       +S Q         Q ++N +  +Q    +  + + 
Sbjct: 537 GEDPNAPIITGAAAPAGPELEGPSAASAQGDEVQIEVPQLKMN-HDFEQKLETMRRIAQQ 595

Query: 538 NEERFAKILRKWARSE 553
           N    A ++++W  SE
Sbjct: 596 NPRAVAAVVKQWVSSE 611


>gi|167561148|ref|ZP_02354064.1| flagellar MS-ring protein [Burkholderia oklahomensis EO147]
          Length = 490

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 117/443 (26%), Positives = 198/443 (44%), Gaps = 15/443 (3%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G ++ VP++ V + R+ LA+ G
Sbjct: 50  WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAVLVPANQVHETRLKLASIG 109

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RTI+SI+ + +ARVH+ +P  
Sbjct: 110 LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTIESINTVRSARVHLAIPKP 167

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++      V    +  A+  +V+++VP++   +VT++D  G LLT 
Sbjct: 168 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 227

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 228 TASASGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 287

Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH--------VSDRKVPLPRSLEN 328
           P+   +++   S+    +     S          N P          S+ +   P +   
Sbjct: 288 PNGAPQQTAIRSQQTSTATELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 347

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           +D+K+  +NYE++            ++RLS+AVVVN     +  GR   Q      LA+I
Sbjct: 348 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPAADAKGRVTMQPLTAEKLAQI 407

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G + +RGD++ + +  F       +        D++           V    
Sbjct: 408 QQLVKDAMGYDEKRGDSVNVVNSAFSTAADPFADLPWWRQPDMIELGKDIAKWLGVAAAA 467

Query: 449 TLLVTFLGLHALRRLHNIDDAKK 471
             L       ALRR         
Sbjct: 468 AALYFMFVRPALRRAFPPPAEPA 490


>gi|209884352|ref|YP_002288208.1| flagellar M-ring protein FliF [Oligotropha carboxidovorans OM5]
 gi|209872548|gb|ACI92344.1| flagellar M-ring protein FliF [Oligotropha carboxidovorans OM5]
          Length = 537

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 129/554 (23%), Positives = 242/554 (43%), Gaps = 25/554 (4%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +  L+ F +   SLG  R+  + +V +  +  F      V +P    LY  L   D   +
Sbjct: 1   MQGLVSFIR---SLGAARLAAMLAVAMALLGFFGFVILRVTAPQMITLYTDLGYDDAAGV 57

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    I + + ++G+ I VP   V + R+ LA  GLP  S   GYE+FDK  + G T
Sbjct: 58  IKELDRQGIPYEMKNDGAIIMVPKDKVTRLRMKLAESGLPKGSG-VGYEIFDKSETLGST 116

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
           SF+Q +  +RALEGE+ARTI++I  I   RVH+V+P+   F +    P+A++++R     
Sbjct: 117 SFVQNVNHLRALEGELARTIKAIDRIQGVRVHLVLPERPLFSREKPEPSAAIVVRVRGAL 176

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI--QHEI 241
             +   AIRHLVA++V  L    V+++D  G+LL     + N +G   +  + +  ++ +
Sbjct: 177 EAQQVRAIRHLVASSVNGLKPQRVSIVDENGQLLADGSGDANGMGDVGADERRVAYENRL 236

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
              I   + + +G    R  + A+ + +        +DP+ +V RS +  +++  + ++ 
Sbjct: 237 RKQIESIVTSVVGGGRARVQLSADFDYNKVTETSDKFDPEGRVLRSSQTREES-SATSNG 295

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
               VTV   MP  + ++       +   K EE +NYEI+  +     +  +++R+S+AV
Sbjct: 296 LNGQVTVNNEMPG-NQQQNAANAGKDQAKKSEEINNYEISRTTKTEVTEAGRVQRMSVAV 354

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           +V+        G      +    L  I  +V +A G +  RGD + + ++ F +      
Sbjct: 355 LVDGVYSRNEKGDQVYAPRSQEDLERIATLVRSAIGFDKARGDQVEVVNLRFADAPSAIP 414

Query: 422 GTVQVSFMDIL---SRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
                 ++ +           I   V  + +++V F+ +  L +    +D          
Sbjct: 415 LPDSNGWLSVFQFTKDDVMYFIELGVMSLLSIVVVFMVVRPLVKRVLAEDVPLANAAPAL 474

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
             +P P              +A+        +      +++   V  QS  R+  + + N
Sbjct: 475 PEAPQP--------------VAVAGPVHTAATAQMIDVAQVQGQVHAQSVHRVGELADRN 520

Query: 539 EERFAKILRKWARS 552
                 I+R+W   
Sbjct: 521 PNETVAIIRQWLTE 534


>gi|300722640|ref|YP_003711930.1| flagellar basal-body MS-ring and collar protein [Xenorhabdus
           nematophila ATCC 19061]
 gi|297629147|emb|CBJ89743.1| flagellar biosynthesis; basal-body MS(membrane and
           supramembrane)-ring and collar protein [Xenorhabdus
           nematophila ATCC 19061]
          Length = 574

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 135/589 (22%), Positives = 246/589 (41%), Gaps = 64/589 (10%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +Q   F    + +     + L       I + +A   ++ SP Y  LY  L   D   I 
Sbjct: 9   NQKKGFSAIISRIKADPKVPLLVAGSAAIAIVVALFLWLRSPDYRVLYSNLSDKDGGEIV 68

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L++ N+ +R ++NGS+I +P+  V + R+ LA QGLP   + +G+EL DK   FG++ 
Sbjct: 69  TQLTQMNVPYRFAENGSAIMIPTEKVHETRLKLAQQGLPKGGA-TGFELLDKE-KFGISQ 126

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           F +++   RALEGE+ART++S+  + +ARVH+ MP    F +    P+ASV +  +   V
Sbjct: 127 FSEQVNYQRALEGELARTVESLGPVQSARVHLAMPKPSLFVREQKSPSASVTVGLLQGRV 186

Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQAIQHEI 241
                  AI H+V+++V  L  G+VT++D +G+LLT ++   R++    L   Q I++  
Sbjct: 187 LDEGQINAIVHMVSSSVAGLPAGNVTIVDQSGRLLTQSDATGRDLNTTQLKYTQEIENRF 246

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE--- 298
              I   LA  +G  N  + V A+++   ++     Y P+    ++   SK +  SE   
Sbjct: 247 RHRIETILAPVVGRGNVHAQVTAQVDFSRREETTEEYKPNQPPNQAAVRSKQSSSSEQSG 306

Query: 299 -----------TSQPESAVTVEQNMPHVSDRKVPLPRSLEN------------------- 328
                      ++QP +A +     P+ +        S E                    
Sbjct: 307 GPLVGGVPGALSNQPSAAPSAPIEKPNTNANTNAKDNSDEKPDQQQRNGNNRNNSYERMV 366

Query: 329 ----TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY 384
                ++ +E +NYE++     T      +ERLS+AVVVN   +    G    +  +   
Sbjct: 367 SNNHNNRYDETTNYEVDRTIRHTQLQAGAVERLSVAVVVNYTMVQGENGPET-KPLMPEQ 425

Query: 385 LAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALV 444
           LA+I  +   A G ++ RGD++ +T+  F +               +L +          
Sbjct: 426 LAQIEALTREAIGFSTDRGDSLNVTNTPFNDTTEVIEALPFWQHPVLLDKLLDAG----- 480

Query: 445 FLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSS 504
                          L          +  +  +         +A+          A  ++
Sbjct: 481 -------------RWLLLALAAWLLWRKMIVPQIAKKRAAEKAALDAQKNQQKRSAETNA 527

Query: 505 NQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             D     +  + R+N+ +  Q   R+  + E +    A ++R+W  +E
Sbjct: 528 EMDEKMRRQMARQRVNAELQSQ---RIRELAEKDPRVVALVIRQWMSNE 573


>gi|254785458|ref|YP_003072887.1| flagellar MS-ring protein [Teredinibacter turnerae T7901]
 gi|237683992|gb|ACR11256.1| flagellar M-ring protein FliF [Teredinibacter turnerae T7901]
          Length = 558

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 125/561 (22%), Positives = 235/561 (41%), Gaps = 33/561 (5%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
              +   +L   R   L   +   + +  A   +     Y  LY  L+  D   +   L 
Sbjct: 15  DLIEGFNNLNLIRQAGLMVGLAASVAIGFAVVLWSQGEDYKPLYGSLDRLDSAEVGQVLD 74

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
             +I ++I  +  ++ VP   + KARI LA  G+       G+EL D+    G + FM+ 
Sbjct: 75  FNDIPYKIDGSTGALLVPVDKLQKARILLAENGI-QGDKTIGFELLDQEQPLGTSQFMEA 133

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI--NPSVYK 186
               R+LEGE+ARTI SI+ + +ARVH+ +P    F + G  P+ASV +      P   K
Sbjct: 134 TRYRRSLEGELARTIASINSVRSARVHLAIPKRSVFVRDGREPSASVFLDLYPGRPIKPK 193

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS--LSIVQAIQHEIEMN 244
               I +LVAA++P LD  +VT++D  G L+     +  +   S  L   + ++ +I + 
Sbjct: 194 QIAGIANLVAASIPELDSTNVTIVDQKGNLMEVAPEDEKLAQASQHLDYTRKVEDDIVLR 253

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE------ 298
           I + L   +G  NF++ V A+L+    +     ++PD    RS + S++ +         
Sbjct: 254 IRRLLTPIIGDANFKTEVAADLDFTEMEQAAETFNPDLPAIRSEQTSEEQRIGAGGPGGI 313

Query: 299 ----TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
               T+QP +     +             ++     +     NYE++     T H   +L
Sbjct: 314 PGALTNQPPADGAAPE---VAVPGGGGDGQTPPQQSQSRATRNYELDRTVSYTKHQKGRL 370

Query: 355 ERLSIAVVVNKG-RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
            RL++AVVV+   +     G +      ++ L  +  +V  A G ++ RGD++ + +  F
Sbjct: 371 RRLTVAVVVDDKVQRNAETGEATRVPWTEAELERLAILVRDAVGFSAARGDSVNVLNEPF 430

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
           +    F+SG + +   D        +     FL+   L+  L    L+ L     AK   
Sbjct: 431 VAQLDFDSGDLPIWKEDWFLSLAKQLAG---FLIIVALILGLMRPVLKSLAGA-GAKTKA 486

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQ-DIFSHSRNLQSRINSYVSKQSDLRLL 532
                 L     +   +   + ++ + L   +   + S     + ++N+         + 
Sbjct: 487 EEEAKELEALQAAGIDSFDSLSDETVTLTGGDALALPSPEETYEQQLNA---------VK 537

Query: 533 HMIEINEERFAKILRKWARSE 553
            ++  +  R A+++++W   E
Sbjct: 538 GLVAEDPGRVAQVIKRWINEE 558


>gi|27381975|ref|NP_773504.1| flagellar MS-ring protein [Bradyrhizobium japonicum USDA 110]
 gi|27355145|dbj|BAC52129.1| flagellar M-ring protein [Bradyrhizobium japonicum USDA 110]
          Length = 553

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 189/551 (34%), Positives = 308/551 (55%), Gaps = 17/551 (3%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           Q+ Q   +   LG  R++ L  +    ++  +   ++++ P ++ LY  L   DV R+  
Sbjct: 18  QIQQLLNNLLELGPRRLMALGLIGFAVLVTVVGGAYYLSRPEFETLYTGLSREDVTRMGA 77

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
           AL E NI F ++  G ++SV  S   +AR+ LA +GLP+ S+NSGYELFDK+ S GLTSF
Sbjct: 78  ALREQNIAFDVNTAGDAVSVRPSQTMQARMLLAEKGLPT-SANSGYELFDKIGSLGLTSF 136

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
           MQE+T++RALEGEIART+Q + G+ AARVHIVMP  GSFR     P+ASV++R       
Sbjct: 137 MQEVTKLRALEGEIARTVQLMKGVKAARVHIVMPVRGSFRATQQPPSASVVLRTDGAIEA 196

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-GKSLSIVQAIQHEIEMN 244
           ++A++IRHLVAAA+P +    VTVLD+ G +L A E E      K  S+ + +   ++ N
Sbjct: 197 RTAQSIRHLVAAAIPGMSRDKVTVLDADGSMLLAEEDEATAAPTKMASLQKTVGGMVQEN 256

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           I KAL  +LG+DNF  +V  +L+ D +Q  E VYDP+ + ERS+R  ++ + S+ +   +
Sbjct: 257 IRKALTPYLGLDNFEVSVAPQLSTDKRQTNETVYDPEGRAERSVRNVREKESSQNADRST 316

Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
             TV+QN+P           S E+  ++E+ +N+E+++K+  T  D Y +++L IAV+VN
Sbjct: 317 PTTVQQNLPDQQVNAGGSKNSSEDKTRREDVTNFEVSSKTTTTVSDGYLVKKLFIAVLVN 376

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424
           + RL   LG  ++Q  +DS LAEI+++ + A G++ +RGD I +T++DF+E     +   
Sbjct: 377 RARLVADLGDKSNQAIVDSKLAEISQLAATAGGLDKQRGDQIQVTAVDFIEGSRELAPVP 436

Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPP 484
            +SF++++++   +VINA+  L    ++ + GL                     IL+   
Sbjct: 437 PISFVEMINKQLGSVINAVTILAVASMLVWFGLRP---------------AVNGILTHRA 481

Query: 485 ISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAK 544
                          A   +  +      NL   +   + +    RL  ++ +++ + A 
Sbjct: 482 AQEQTEAAEAAELEAATALALAESQDPELNLVEDLEGKMQRTPQKRLEQIVRLDQAQAAA 541

Query: 545 ILRKWARSEIE 555
           IL+ W R E  
Sbjct: 542 ILKDWMRREEA 552


>gi|212709512|ref|ZP_03317640.1| hypothetical protein PROVALCAL_00554 [Providencia alcalifaciens DSM
           30120]
 gi|212687850|gb|EEB47378.1| hypothetical protein PROVALCAL_00554 [Providencia alcalifaciens DSM
           30120]
          Length = 563

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 136/534 (25%), Positives = 252/534 (47%), Gaps = 40/534 (7%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
              +  SP Y  L   L   D   I   L++ N+ ++I+DNGS+I VP+  V + R+ LA
Sbjct: 44  LLLWFRSPDYRVLLSNLSAKDGGDIVSQLTQMNVPYQIADNGSAILVPADKVHELRLKLA 103

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
             GLP    N+G+EL DK   FG++ F ++I   RALEGE++RTI+S+S + +ARVH+ +
Sbjct: 104 QSGLPKGG-NTGFELLDKE-KFGISQFSEQINYQRALEGELSRTIESLSPVQSARVHLAI 161

Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           P    F +    PTASV +  +   +       AI H+V+++V  L   +V ++D TG+L
Sbjct: 162 PKPTLFVREQKLPTASVTVGLLPGRMLDEGQISAIVHMVSSSVTGLTAANVIIVDQTGRL 221

Query: 217 LTANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LT N+  +++     + + + ++  ++  I   L+  +G  N  + V A+++    +   
Sbjct: 222 LTNNDNSQQSANSAQIKMTKEMEAHLKERIEDILSPLVGRANIHAQVTAQMDFSKVEQTS 281

Query: 276 IVYDPDSK----VERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD- 330
             Y P+        RS + S+  Q S    P        N P VS    P+  + ENTD 
Sbjct: 282 EEYKPNQTPDAAAVRSRQSSESLQNS-NGGPSGVPGALSNQP-VSAPSAPIDGNKENTDG 339

Query: 331 -------------KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSAD 377
                        +++E +NYE++ K   T      ++RLS+AV+VN        G    
Sbjct: 340 KTAGNTRNGTLNTQRDETTNYEVDRKISHTQRQIGVVDRLSVAVIVNYQSQEGEKG-PEM 398

Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437
           +      L +I+ +   A G +++RGD+I IT+  F ++         +S   ++S+   
Sbjct: 399 KPLPPEMLQQIDALTREAMGYSAQRGDSINITNSLFTDDTPVIEEPSLLSSPQVISQ--- 455

Query: 438 TVINALVFLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPN 496
             ++    ++  L+  F+    ++         ++ ++  +  ++    +S V    +  
Sbjct: 456 -ALDYGKIVLIALIAWFMWRFGIKPQWVKYRKTQQAQIDAEMSIA---NASQVKAPFVVE 511

Query: 497 DNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
           + I+ D    D  +  R  + R+++ +  Q   R+  M E + +  A ++R+W 
Sbjct: 512 EEISED---MDEKTRRRLTRQRVSAEIQSQ---RIREMAEKDPQVVAMVIRQWL 559


>gi|289666081|ref|ZP_06487662.1| flagellar MS-ring protein [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 574

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 114/568 (20%), Positives = 233/568 (41%), Gaps = 28/568 (4%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++  Q+F    SL  TR L + ++I + +   +A  F+   P Y +LY  L+       +
Sbjct: 15  EKAGQWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAA 74

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L  A I ++I     +ISVP   +  AR+ LA  GL    +  G+EL +K   FG++ 
Sbjct: 75  DLLRTAQIPYKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQ 134

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           F++      ALE E++RTI ++  +  ARVH+ +P   +F +     +ASV++       
Sbjct: 135 FVENARYQHALETELSRTISTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQG 194

Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240
            +    +AI +LVA+++P++    VTV+D +G++L+  +   +          V+  +  
Sbjct: 195 LERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESS 254

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I + L    G          +++    +    +Y+ +    RS +++  +  +  +
Sbjct: 255 YNQRIRELLEPMTGPGRVNPETSVDMDFSVVEEARELYNGEPAKLRSEQVNDTS--TTAT 312

Query: 301 QPESAVTVEQN--------------MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346
            P+       N                  +        +      K    NYE++     
Sbjct: 313 GPQGPPGATSNSPGQPPAPAAAGAPGTPAAANGQATAAAAPTESSKSATRNYELDRTLQH 372

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
           T     +++R+S+AV+++        G+  +Q    + L  I  +V  A G ++ RGDT+
Sbjct: 373 TRQPAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQAVGFDAARGDTV 432

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
           ++ +  F+   +      +             V N L  LVG ++V  L    +R     
Sbjct: 433 SVMNAPFVREAVAGEEGPKWWEDP-------RVQNGLRLLVGAVVVLALLFGVVRPTLRQ 485

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
                     +          +    ++  D+  L    +D  S  ++ ++ I    + +
Sbjct: 486 LTGVTAVKDKQGKAGKDGTPQSADVRMVDEDDELLPHMGEDTASIGQDRKTPIALPDAYE 545

Query: 527 SDLRL-LHMIEINEERFAKILRKWARSE 553
             +R+    ++ + +R A++++ W  SE
Sbjct: 546 ERMRVAREAVKADSKRVAQVVKGWVASE 573


>gi|115523187|ref|YP_780098.1| flagellar MS-ring protein [Rhodopseudomonas palustris BisA53]
 gi|115517134|gb|ABJ05118.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris BisA53]
          Length = 544

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 193/555 (34%), Positives = 314/555 (56%), Gaps = 14/555 (2%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M   +   + + +   LG  R+++LA V L   +      ++++ P ++ LY  L   DV
Sbjct: 1   MVNREYAQKLWGNLLELGPRRLVLLALVGLAVFIGVGGGAYYISRPEFNVLYSGLSREDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            R+S AL +ANI F ++  G ++ V      +AR  LA +GLP SS++ GYELFDK+ S 
Sbjct: 61  TRVSAALRDANIAFDVNATGDTVLVRPGQAAQARTLLADKGLP-SSTSGGYELFDKIGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEIARTIQ I G+ AARVHIVMP  GSFR+    P+ASV++R  
Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQVIKGVKAARVHIVMPARGSFRREQPVPSASVVLRTE 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS-IVQAIQH 239
            P+  ++A ++RHLVAAAVP +    VTVLDS G LL ++E        +L+ + + +  
Sbjct: 180 GPAEARTARSVRHLVAAAVPGMTPDKVTVLDSDGSLLGSDEDGVGSTPTTLANLQRVVSR 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
            I+ N++KAL  +LG+DNF  +V  +L+ D +Q  E +YDPDS+V+RS+R  ++ + S++
Sbjct: 240 SIQDNVSKALTPYLGLDNFEVSVATQLSTDKRQTNETIYDPDSRVQRSVRAVREKETSQS 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
              ++  TV+QN+P           S E   ++E+ +N+E+++K+I TT D + + ++ +
Sbjct: 300 LDRQTPTTVQQNLPDQQVNAGNGNNSNEEKQRREDVTNFEVSSKTITTTSDGFAVTKMFL 359

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AV+VN+ RL   LG  A +  I++ +AEI ++ + A GI+  RGD I +++++F+E    
Sbjct: 360 AVLVNRPRLVASLGDKASEAAIEAKVAEIAQLAATAAGIDRPRGDQIQVSAVEFIEGGRD 419

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
            +    VSF D+L R   +V++A+  L    ++ + GL                    + 
Sbjct: 420 LAPVPGVSFTDVLMRQAGSVVSAVTILAVAGMLIWFGLRP------------AINTVLAG 467

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
                 S  +          A  ++ Q     + NL   ++         RL  +++++E
Sbjct: 468 TKSNEASQLLMNEGAGLLAGAGGAAAQLGHEATPNLVGDVSMRAQHAPQRRLEQIVQLDE 527

Query: 540 ERFAKILRKWARSEI 554
           ++ A IL++W R E 
Sbjct: 528 KQAAAILKQWIRQEE 542


>gi|222033677|emb|CAP76418.1| flagellar M-ring protein [Escherichia coli LF82]
          Length = 552

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 133/576 (23%), Positives = 252/576 (43%), Gaps = 50/576 (8%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           A+  + L++     +  +  +++  S     + + +A   +  +P Y  L+  L   D  
Sbjct: 5   AVQTKSLEWLNRLRANPKIPLIVAGS---AAVAVMVALILWAKAPDYRTLFSNLSDQDGG 61

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG
Sbjct: 62  AIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFG 119

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           ++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  + 
Sbjct: 120 ISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLP 179

Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQ 238
                     AI HLV++AV  L  G+VT++D    LLT +N   R++    L     ++
Sbjct: 180 GRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGLHLLTQSNTSGRDLNDAQLKYASDVE 239

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQ 295
             I+  I   L+  +G  N  + V A+L+  +++  E  Y P+    ++   S+   +++
Sbjct: 240 GRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESE 299

Query: 296 RSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYE 339
           +S +  P        N P  ++                       S   + ++ E SNYE
Sbjct: 300 QSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYE 359

Query: 340 INTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN 399
           ++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G +
Sbjct: 360 VDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFS 415

Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA 459
            +RGD++ + +  F  +   + G +              ++ A  +L+  L+   L   A
Sbjct: 416 EKRGDSLNVVNSPF-NSSDESGGALPFWQQQAFIDQ---LLAAGRWLLVLLVAWLLWRKA 471

Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519
           +R       A+  +   +   +   +  AV   L  ++ +    +NQ           R+
Sbjct: 472 VRPQLTRR-AEAVKTVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ-----------RL 519

Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
            + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 520 GAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|332095496|gb|EGJ00512.1| flagellar M-ring protein FliF [Shigella dysenteriae 155-74]
          Length = 473

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 119/447 (26%), Positives = 206/447 (46%), Gaps = 33/447 (7%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           + +         LI+A    V +M+  A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 13  WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 71  NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +          
Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++  I+  I  
Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQRSETSQPES 304
            L+  +G  N  + V A+L+  +++  E  Y P+    ++   S+   ++++S +  P  
Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSGSGYPGG 308

Query: 305 AVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNYEINTKSIATT 348
                 N P  ++                       S   + ++ E SNYE++     T 
Sbjct: 309 VPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTK 368

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
            +   ++RLS+AVVVN   L +           +  + +I  +   A G + +RGD++ +
Sbjct: 369 MNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLNV 424

Query: 409 TSMDFL---ENQLFNSGTVQVSFMDIL 432
            +  F    E+        Q +F+D L
Sbjct: 425 VNSPFNSSDESGGELPFWQQQAFIDQL 451


>gi|118593642|ref|ZP_01551018.1| flagellar M-ring protein [Stappia aggregata IAM 12614]
 gi|118433753|gb|EAV40414.1| flagellar M-ring protein [Stappia aggregata IAM 12614]
          Length = 537

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 148/556 (26%), Positives = 262/556 (47%), Gaps = 23/556 (4%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++ L++F K   +LG  RI  + +V  + + +F    F V +P    LY +L + D   I
Sbjct: 1   MNGLVEFIK---TLGAARIAAMGAVAAILVGVFAFIIFRVTAPQMTTLYNELTLEDSAAI 57

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    + F I+  G+SI VP+  V + R+ LAA+GLP+  S  GYE+FD+ ++ G T
Sbjct: 58  VSQLESQGVQFEIARQGASILVPNEQVARLRMQLAAEGLPTGGS-IGYEIFDRSDTLGAT 116

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
           SF+Q I  +RA+EGE++RTI S+  I AARVH+V+P+   F+K    P+AS+++      
Sbjct: 117 SFVQNINHLRAMEGELSRTIGSLDRIRAARVHLVIPERQLFQKDRRPPSASIVLNVRGAL 176

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA---NEMERNILGKSLSIVQAIQHE 240
                 A++HLVA AV  L+   V+++D +G+LL +   N+ +  +          ++  
Sbjct: 177 GPGEIRAVQHLVATAVDGLEPDRVSIVDESGRLLASGVGNDEDGLLTNSLQERTVEVEGR 236

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           +   I + L + +G    R  V AE++ +        +DPD +V RS +  ++A  + + 
Sbjct: 237 LRNQIEEILNSVVGPGRARVRVNAEVDYNRLTETTETFDPDGQVVRSTQSKEEASSAVSR 296

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
                VTV   +P+    +    R  + +   EE  NYEI+  +     +  K++RLS+A
Sbjct: 297 N--GQVTVANQLPNADAGQGGAER--DTSSVTEEIVNYEISHSTRTEVVEAGKIKRLSVA 352

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           V+V+     +  G S    +    L  I  +V +A G +S RGD + + ++ F      +
Sbjct: 353 VLVDGTYQPDGNGGSTYTPRSQETLDRIAVLVRSAVGFDSERGDVVEVVNLQFALPPQDD 412

Query: 421 SGTVQVSFMDILSRHFATVIN-ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
                 S  D             ++FL+  +L+ F+    LRR+   ++ +  E      
Sbjct: 413 LLAESDSLFDFTRNDIIRFAELGVLFLIAVMLLLFVVRPLLRRIVTPEEKQPQE------ 466

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
           L   P  + V    +P +      + +D F      Q++    +   S  ++  MI+ + 
Sbjct: 467 LMIGPDGTLVIETEVPQEE-----AVEDEFVIEWLEQAKQEGAMQASSIAKVGDMIKDHP 521

Query: 540 ERFAKILRKWARSEIE 555
                I+R W   +  
Sbjct: 522 TEAVTIVRGWLDEQAA 537


>gi|39648187|emb|CAE26707.1| putative flagellar M-ring protein [Rhodopseudomonas palustris
           CGA009]
          Length = 522

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 135/535 (25%), Positives = 233/535 (43%), Gaps = 21/535 (3%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           + + +V +  +  F      V+ P    LY  L V D + I   L    I F + ++G+ 
Sbjct: 1   MAMIAVTVALVGFFAFVIMRVSQPQMTTLYTDLSVEDSSSIIKELERQGIPFEMRNDGAI 60

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           + VP   V + R+ LA           GYE+FDK ++ G TSF+Q I  +RALEGE++RT
Sbjct: 61  LLVPKDKVTRLRMKLAEG-GLPKGGGVGYEIFDKSDALGTTSFVQNINHLRALEGELSRT 119

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNL 202
           I++I  + AARVH+V+P+   F +    P+AS+++R       +   AIRHLVA+AV  L
Sbjct: 120 IRAIDRVQAARVHLVLPERPLFSREAPEPSASIVLRVRGALEPQQVRAIRHLVASAVNGL 179

Query: 203 DMGDVTVLDSTGKLLTANEMERNILGKSLSIVQA--IQHEIEMNINKALAAFLGVDNFRS 260
               V+++D  G+LL         +  + S  +    +  +   I   +++ +G    R 
Sbjct: 180 KPQRVSIVDEAGQLLADGSASGEQVEGATSDERRAAFEKRMRNQIEGIVSSVVGSGRARV 239

Query: 261 AVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV 320
            V A+ + +        +DP+ +V RS +  +++  + TS  +  VTV   +P  +  + 
Sbjct: 240 QVSADFDYNKITQTSDKFDPEGRVLRSSQTREES--AATSAADGQVTVNNELPGANQGQG 297

Query: 321 PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380
              R +    K EE +NYEI+  +     +  ++ RLS+AV+V+        G      +
Sbjct: 298 AGARDVSK--KSEETNNYEISRVTKTEVTEAGRVNRLSVAVLVDGAYTKNDKGELVYAER 355

Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDIL---SRHFA 437
               L  I  +V +A G + +RGD I + ++ F E             M +         
Sbjct: 356 PKEQLDRIAALVRSAIGFDQKRGDQIEVVNLKFAEAPQVEKLPEPAGLMGMFQFTKDDIM 415

Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497
            +I   V  +  L+V F+ +  L +           +  +          A+  G +P  
Sbjct: 416 NMIQLGVMFLLGLVVLFMVIRPLVKRI---------LAAEPAPEAAGGLPALADGTVPQ- 465

Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
            I  D         S    +++   V  QS  R+  + E N    A I+R+W   
Sbjct: 466 -IGADGQPVPASVPSMIDIAQVQGQVHAQSVHRVGELAERNPNETAAIIRQWLAE 519


>gi|291278937|ref|YP_003495772.1| flagellar M-ring protein FliF [Deferribacter desulfuricans SSM1]
 gi|290753639|dbj|BAI80016.1| flagellar M-ring protein FliF [Deferribacter desulfuricans SSM1]
          Length = 556

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 131/560 (23%), Positives = 243/560 (43%), Gaps = 16/560 (2%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           MA+ D + QF     SL   + + + +  +   +  +    + N P Y  LY  L   D 
Sbjct: 1   MALKDFINQFKAVFNSLSLIQKVSIVTATVAVFLTIIVLVIWANKPVYKTLYSNLSSDDA 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +I   L    I + + DNG +I VP   V + R++LA +GLP S   +G+ELFDK +SF
Sbjct: 61  AKIVEELKANKIPYELKDNGKTILVPEKNVYELRLNLAQKGLP-SGGGAGFELFDK-SSF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           G++ F Q +   RAL+GE+ARTI+S+  +  ARVH+ +P    F    + P A+V+++  
Sbjct: 119 GISEFAQNVNYQRALQGELARTIKSLDEVEDARVHLTLPKERIFVSEESSPKATVVLKFR 178

Query: 181 NPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN----ILGKSLSIV 234
           N +    ++ +AI  LVA AV  L + +V V+D+ G+LL+    +      +    L   
Sbjct: 179 NGANISRENIKAIASLVAGAVKGLTIDNVQVVDTKGRLLSEFLSKDYEPLLLTQTQLEYQ 238

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
           + I+  +E  IN  L+  LG DN  + V A+++   + + +  YDP+  V RS +  +  
Sbjct: 239 KHIEKNLESKINSILSRVLGPDNAVAKVTADIDFTKKVVSKEEYDPN-PVLRSQQTVEIE 297

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
            ++  + P     V  N+   ++       S     K E   N+E+             +
Sbjct: 298 SKNTPNAPGGTPGVSSNLAEPNNIN---NGSNSEYSKAETTQNFEVGKTVTKEEKPIGVV 354

Query: 355 ERLSIAVVVNK---GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
           +++++AV++N     +      +          + +I K+V +A GI+  RGD I +T++
Sbjct: 355 KKITVAVLLNDKKVVKEEGKKSKIEYVKWTPEEIEKIKKLVESAAGIDVNRGDRIEVTNI 414

Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471
            F         +      + +S  F      L  L+  L    +    L+RL  + + ++
Sbjct: 415 SFDTTHDLEVASFYNK-QEKMSLIFTIAKYVLALLIVVLFYFLVVRPILKRLETVRETEE 473

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
           G                     +       +   +       +    +++  +K    +L
Sbjct: 474 GTFVAAGATGKGESVDISIGEEIKFPKTIEELEKEIENELEESAPVDVDTVKTKVMLKKL 533

Query: 532 LHMIEINEERFAKILRKWAR 551
                 + E  A +++ W +
Sbjct: 534 EEAANEDPETIANLIKVWIK 553


>gi|288942636|ref|YP_003444876.1| flagellar M-ring protein FliF [Allochromatium vinosum DSM 180]
 gi|288898008|gb|ADC63844.1| flagellar M-ring protein FliF [Allochromatium vinosum DSM 180]
          Length = 577

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 114/554 (20%), Positives = 222/554 (40%), Gaps = 19/554 (3%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            +S   +   R + L   +   ++  +A  F+   P Y  L+ +LE ++   +  AL++ 
Sbjct: 33  LQSFREMPVGRQIALLGTLAGGLVAVVAILFWALKPTYVPLFSQLEGAEAAEVMEALTQL 92

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
            + +R+ ++   I +P   V + R+ LA QGLP  S++ G+EL  + + FG +  ++   
Sbjct: 93  GVPYRVDNSSGRIEIPQQRVAETRLQLAGQGLPK-SADIGFELLQQESGFGTSRLIEGAR 151

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYKSA 188
             RALEGE+ R+I ++  +  ARVHI   +   F +    P+ASV++             
Sbjct: 152 FQRALEGELGRSIAALEPVDKARVHIARAERSVFVRERVPPSASVVVHLKGSRGLTDTQV 211

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEMNIN 246
            AI HLV+++VP L    VTV+D +G+LLT++  +++  +    L     ++      + 
Sbjct: 212 GAIVHLVSSSVPELTPDRVTVVDQSGRLLTSDGEDKSSRLSLDHLEYTHRVESRYVDRVQ 271

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306
             L   +G D  R  V A+L+    +  +  YDPD    RS +L+++ +           
Sbjct: 272 SLLVPIVGRDRVRVQVSADLDFSRVERTQESYDPDKTAIRSEQLNEEERIGADPLAGGIP 331

Query: 307 TVEQNMPHVSD-----RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
               N P         +      ++ ++  ++   NYE++            + RL+ AV
Sbjct: 332 GALTNQPPAGGVVGQQQAAQGNATVPSSRSQQTTRNYEVDRTISHIQETPGGVRRLTAAV 391

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           VV+        G      + D+ +  +  +V  A G N  RGD++ + S  F+     + 
Sbjct: 392 VVDYVDQVNEAGEPIRVPRSDAEMETLRDLVREAIGFNEARGDSLQVRSASFVPESDEDE 451

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
             +               +  +  + G LL   + L  ++   N    K  E        
Sbjct: 452 EPIWTQPW---------FLELVKIVGGLLLALIVMLTVVKPALNQILPKPPEPEKPQEDE 502

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
                +    G    +      S     S    L         +     +  M+  + +R
Sbjct: 503 ETRALTDGIEGEGEGEEGEEIVSLTHEPSGLAALMGPKGPDRQQLDLEAVREMVREDPKR 562

Query: 542 FAKILRKWARSEIE 555
             +++++W   +  
Sbjct: 563 VVQVMKQWLAEDGS 576


>gi|58582224|ref|YP_201240.1| flagellar MS-ring protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84624117|ref|YP_451489.1| flagellar MS-ring protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188576784|ref|YP_001913713.1| flagellar MS-ring protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188576976|ref|YP_001913905.1| flagellar MS-ring protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58426818|gb|AAW75855.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84368057|dbj|BAE69215.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188521236|gb|ACD59181.1| flagellar M-ring protein FliF [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188521428|gb|ACD59373.1| flagellar M-ring protein FliF [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 574

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 116/568 (20%), Positives = 242/568 (42%), Gaps = 28/568 (4%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++  Q+F   +SL  TR L + ++I + +   +A  F+   P Y +LY  L+       +
Sbjct: 15  EKAGQWFDRVSSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAA 74

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L  A I ++I     +ISVP   +  AR+ LA  GL    +  G+EL +K   FG++ 
Sbjct: 75  DLLRTAQIPYKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQ 134

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           F++      ALE E++RTI ++  +  ARVH+ +P   +F +     +ASV++       
Sbjct: 135 FVENARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQG 194

Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240
            +    +AI +LVA+++PN+    VTV+D +G++L+  +   +          V+  +  
Sbjct: 195 LERNQVDAIVNLVASSIPNITPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESS 254

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I + L    G          +++    +    +Y+ +    RS +++  +  +  +
Sbjct: 255 YNQRIRELLEPMTGPGRVNPETSVDMDFSVVEEARELYNGEPAKLRSEQVNDTS--TTAT 312

Query: 301 QPESAVTVEQN--------------MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346
            P+       N                  +        +      K    NYE++     
Sbjct: 313 GPQGPPGATSNSPGQPPAPAAAGAPGTPAAANGQATAAAAPTESSKSATRNYELDRTLQH 372

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
           T     +++R+S+AV+++        G+  +Q    + L  I  +V  A G ++ RGDT+
Sbjct: 373 TRQPAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQAVGFDAARGDTV 432

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
           ++ +  F+   +      +      +      ++ ALV L    L+  +    LR+L  +
Sbjct: 433 SVMNAPFVREAVAGEEGPKWWEDPRVQNGLRLLVGALVVLA---LLFGVVRPTLRQLTGV 489

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
              K+ +  G +  +P     +    ++ +++  L    +D  S  +  +  I    + +
Sbjct: 490 TPIKEKQRKGGNDGTP----QSADVRMVDDEDSLLPHMGEDTASIGQERKPAIALPDAYE 545

Query: 527 SDLRL-LHMIEINEERFAKILRKWARSE 553
             +R+    ++ + +R A++++ W  SE
Sbjct: 546 ERMRVAREAVKADSKRVAQVVKGWVASE 573


>gi|317492408|ref|ZP_07950837.1| flagellar M-ring protein FliF [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316919747|gb|EFV41077.1| flagellar M-ring protein FliF [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 573

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 134/549 (24%), Positives = 235/549 (42%), Gaps = 65/549 (11%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  SP Y  LY  +   D   I   L++ NI +R +DNG+++ +P+  V + R+ LA QG
Sbjct: 52  WAKSPDYRVLYSNISDRDGGAIVTQLTQMNIPYRFADNGTALLIPADKVHETRLRLAQQG 111

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   +  G+EL D+   FG++ F ++I   RALEGE++RTI+++  +  ARVH+ +P  
Sbjct: 112 LPKGGA-VGFELLDQE-KFGISQFSEQINYQRALEGELSRTIETLGPVQTARVHLALPKP 169

Query: 162 GSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +   +P+ASV +              AI ++V+++V  L  G+VTV+D  G LLT 
Sbjct: 170 SLFVREQKQPSASVTLNLQPGRALDEGQINAIVYMVSSSVAGLPAGNVTVVDQGGHLLTQ 229

Query: 220 NEM-ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
           ++   R++    L     ++  I+  I   L   +G  N  + V A+++   ++  +  Y
Sbjct: 230 SDGTGRDLNATQLKYANEVESRIQRRIEAILQPMVGNGNVHAQVTAQIDNAVREQTDEEY 289

Query: 279 DPDSKVERSI--------------RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLP- 323
            P+    ++               +LS     + T+QP  A T     P  +        
Sbjct: 290 KPNQAPNQAAVRSQQLSDSSQSGGQLSGGVPGALTNQPAPAATGNITNPPQAGGANANTA 349

Query: 324 ----------------RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367
                            S  +  +++E  NYE++     T      ++RLS+AVVVN   
Sbjct: 350 NAQRPASSTIDTNGRRSSSASNARRDETINYEVDRTIRHTQQKAGNVDRLSVAVVVNY-- 407

Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF---LENQLFNSGTV 424
            T   G+S         L ++  +V  A G ++ RGDT+ + +  F    E         
Sbjct: 408 TTNASGKSI--PLTPQQLEQVTALVREAMGFSATRGDTLNVVNTPFTTSAEESGDVPFWQ 465

Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPP 484
           Q SF D+L       +    +L+  ++   L    ++ L N       ++          
Sbjct: 466 QSSFFDLL-------MTLGRYLLVLIVAFILWRKLVKPLLNK------QLANAQPARRVE 512

Query: 485 ISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAK 544
            +  VTT + P         + +   + R  Q R  +    Q   R+  M E +    A 
Sbjct: 513 PTPIVTTPVQPA------KPSNEEIQNRRKSQQRATAEQQAQ---RVRDMAEQDPRVVAL 563

Query: 545 ILRKWARSE 553
           ++R+W  +E
Sbjct: 564 VIRQWMSNE 572


>gi|167717602|ref|ZP_02400838.1| flagellar MS-ring protein [Burkholderia pseudomallei DM98]
          Length = 476

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 121/434 (27%), Positives = 199/434 (45%), Gaps = 15/434 (3%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 44  WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 103

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++SI+ + AARVH+ +P  
Sbjct: 104 LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 161

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++      V    +  A+  +V+++VP++   +VT++D  G LLT 
Sbjct: 162 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 221

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 222 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 281

Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH--------VSDRKVPLPRSLEN 328
           P+   ++S   S+    S     S          N P          S+ +   P +   
Sbjct: 282 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 341

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           +D+K+  +NYE++            ++RLS+AVVVN    T+  GR   Q      LA++
Sbjct: 342 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQV 401

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G + +RGD++ + +  F       +        D++           V    
Sbjct: 402 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 461

Query: 449 TLLVTFLGLHALRR 462
             L       ALRR
Sbjct: 462 AALYFMFVRPALRR 475


>gi|161511085|ref|NP_773639.2| flagellar MS-ring protein [Bradyrhizobium japonicum USDA 110]
          Length = 537

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 137/553 (24%), Positives = 238/553 (43%), Gaps = 23/553 (4%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +  L  F K    +G  R   + +V    +  F      V +P    L+  L V D + I
Sbjct: 1   MQGLADFLKG---IGAARFGAMIAVTAALVGFFAFVIMRVTTPQMTTLFTDLSVEDSSSI 57

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    I F + + G+ I VP   V + R+ LA           GYE+FDK ++ G T
Sbjct: 58  IKDLERQAIQFELRNEGTIIMVPKDKVTRLRMKLAEG-GLPKGGGVGYEVFDKSDALGTT 116

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
           SF+Q I  +RALEGE+ARTI++I  I AARVH+V+P+   F +    P+AS+++R     
Sbjct: 117 SFVQNINHLRALEGELARTIRAIDRIQAARVHLVLPERPLFSREAPEPSASIVVRVRGAL 176

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEM 243
             +   AIRHLVA+AV  L    V+++D  G+LL                    +  +  
Sbjct: 177 EAQQIRAIRHLVASAVNGLKPQRVSIVDEAGQLLADGAATDPEQALGDERRTTFEKRMRK 236

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            +   +++ +G    R  + A+ + +        +DP+ +V RS +  +++  S T+   
Sbjct: 237 QVEDIVSSVVGSGRARVQLSADFDFNKITQTSDKFDPEGRVLRSTQTREES--SMTADNN 294

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
             VTV   +P   +++     + + + K EE +NYEI+  +     +  ++ R+S+AV+V
Sbjct: 295 GQVTVNNELPG--NQQNNGVAAKDQSKKTEETNNYEISRTTKTEVTEAGRVNRISVAVLV 352

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           +        G  A Q +    L  I  +V +A G + +RGD + + ++ F +        
Sbjct: 353 DGIYSKNDKGELAYQDRTKEQLDRIATLVRSAIGFDQKRGDQVEVVNLRFADAPSTAPIA 412

Query: 424 VQVSFMDIL---SRHFATVINALVFLVGTLLVTFLGLHAL-RRLHNIDDAKKGEVGGKSI 479
               F+ +L          +   V ++  L+V F+ +  L +R+   D+      G  S 
Sbjct: 413 EPSGFLGMLQFTKDDVMYFVELGVMMLLGLVVLFMVIRPLVKRILASDEVAAAISGVLSG 472

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
            +    ++      +     A           S    + I   V  QS  R+  + E N 
Sbjct: 473 PAASDEAAPAAGQALLPGGAA-----------SAIDVATIQGQVHAQSVHRVGELAERNP 521

Query: 540 ERFAKILRKWARS 552
                I+R+W   
Sbjct: 522 NETVAIIRQWLTE 534


>gi|78485783|ref|YP_391708.1| flagellar M-ring protein FliF [Thiomicrospira crunogena XCL-2]
 gi|78364069|gb|ABB42034.1| Flagellar M-ring protein FliF [Thiomicrospira crunogena XCL-2]
          Length = 561

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 123/553 (22%), Positives = 237/553 (42%), Gaps = 25/553 (4%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
             K+ TSL   + + L   +   + L +    +  S  Y  L+  ++  D+N +   L +
Sbjct: 22  LLKNLTSLSVAKQVSLVIALAASVALAIGIILWSQSASYTLLFGSMDAKDMNEVIQTLDQ 81

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
            N+ ++I  N  +I VP+  V   R+ LAAQG P  +  +GY++ D    FG++ F +  
Sbjct: 82  ENVPYKIEQNSGAILVPNEQVHSLRLKLAAQGYPKQAP-TGYQILDIDQGFGISQFKETT 140

Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KS 187
              RALEGE+A+++ SI+ + +ARV + MP    F +    PTASV ++         + 
Sbjct: 141 RYQRALEGELAKSVSSINAVKSARVMLGMPKRSVFVRKQQEPTASVTVKLYPGRALNEEQ 200

Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQAIQHEIEMNI 245
             AI +LV++++PN+    VTV+D  G LLT++      N+  K L   + ++  +   I
Sbjct: 201 VSAIVYLVSSSIPNMKPKGVTVVDQQGNLLTSDSHSGIMNVSLKQLGYTRQVEDTLSQRI 260

Query: 246 NKALAAFLGVD-NFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
            + L    G D   R+ V AEL+   Q+     Y+PD +  RS +  K+  R+E   P  
Sbjct: 261 IRLLTPVAGGDHKVRAQVTAELDFTQQEQTRENYEPDPEAIRSEQEIKEINRNEG--PMG 318

Query: 305 AVTVEQNMPHVSDRKV-----PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
                 N P  +         P         K+++  NYE++       +    + RLS+
Sbjct: 319 IPGALTNQPPRAGIAPEEGYKPENDPNLKNSKEKKTKNYELDRTVSHIKNSVGSIRRLSV 378

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AVV++     +  G +      +  L    ++VS A G++  RGDT++I +  F++ +  
Sbjct: 379 AVVLDDKLTVDDNGDTVRTPLTEDELQRYRRLVSDAVGLDEARGDTLSIVNASFIQEKQE 438

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
           +    ++            ++  L  L+    V       L+ L   ++           
Sbjct: 439 DFAGPEIWEEPWFWTLVKQILAGLAVLIIIFGVI---RPMLKDLSKREEVAMDYPEDVPE 495

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
                 ++   +  +   N  ++   +++   S   +  +          ++  ++  + 
Sbjct: 496 EEEELENADEISRALEQMNEEVEQKAEEVDEDSEKDKEMLE---------KVKAVVSADP 546

Query: 540 ERFAKILRKWARS 552
           +  A I+++W   
Sbjct: 547 KLAAHIIKQWMSK 559


>gi|119899006|ref|YP_934219.1| flagellar MS-ring protein [Azoarcus sp. BH72]
 gi|119671419|emb|CAL95332.1| flagellar M-ring protein [Azoarcus sp. BH72]
          Length = 562

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 144/571 (25%), Positives = 249/571 (43%), Gaps = 44/571 (7%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           +L Q  ++  +L   + +  A+ + + + L + A  +   P Y  L+  L+  D  ++  
Sbjct: 19  RLQQVVQNINALSMRQKIAGAAALALAVALIVGALMWNRQPDYGVLFSNLDERDGGQVIA 78

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
           AL + N+ +R+S NG SI VP   V + R+ LAA GLP      G+EL D     G++ F
Sbjct: 79  ALQQQNVPYRMSPNGLSILVPQEQVHELRLRLAAAGLPRGGL-VGFELMD-TQKLGVSQF 136

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
            +++   RALEGE++RTIQSI+ + AARVH+ MP   +F +   +PTASVM+      V 
Sbjct: 137 NEQVNYQRALEGELSRTIQSIAAVAAARVHLAMPKQTAFLRDDQKPTASVMVTLRPGRVL 196

Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKSLSIVQAIQHE 240
                  I HLV+++VP +    V ++D  G+LLT       +  +    L  V+ ++  
Sbjct: 197 DANQVAGIVHLVSSSVPRMVESGVNIIDQNGELLTTKNDPLRQTGLDATQLEYVKEVEAG 256

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS---KVERSIRLSKDAQRS 297
               I   L   +G +NFR+ V A+++ +  +     + P+    +  RS + +++  R 
Sbjct: 257 FIRRIENILQPMVGKNNFRAQVAADVDFNQVEQTAETFKPNPSPDQAIRSQQTTEETNRQ 316

Query: 298 E---------TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
                     ++QP    T     P V   +    ++   T  +    NYE++       
Sbjct: 317 PGPQGVPGALSNQPPVPATAPITTPPVGPNQAGAAQT--GTTSRSAVLNYEVDRTIQHVK 374

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
               +L+RLS+AVVVN    T   G++      D  +A IN +V  A G N  RGDTI +
Sbjct: 375 QSLGQLKRLSVAVVVNHRTETLPNGQTQTVPLTDEEVARINNLVREAVGYNPARGDTINV 434

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
            S  F    +     V +     +          L+  +  L   F  +  L R      
Sbjct: 435 ASSPFA--GIGPEPAVPLWKDPEMIELGKEGFKYLLVALAVLFAYFAIIRPLMR------ 486

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
                    +++ PPP       G         +   +   S +    ++ N+Y +K + 
Sbjct: 487 ---------TVMPPPPEPEVAEAGEPGEPGFEGEEDVEVTLSGA----AQANTYEAKLA- 532

Query: 529 LRLLHMIEINEERFAKILRKWARSEIEDRYT 559
            R   + + + +  A ++R+W     E R +
Sbjct: 533 -RARELAKEDPKMVANLIREWMGLNEEGRKS 562


>gi|329298594|ref|ZP_08255930.1| flagellar MS-ring protein [Plautia stali symbiont]
          Length = 573

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 128/549 (23%), Positives = 229/549 (41%), Gaps = 59/549 (10%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I   L++ NI ++ ++NG ++ VP+    +  + LA QG
Sbjct: 48  WAKAPDYRVLYNNLSDEDGGAIVTQLTQMNIPYQFAENGGALMVPADKEHELSLRLAQQG 107

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL DK   FG++ F ++I   RALEGE+ARTI+++  + +ARVH+ MP  
Sbjct: 108 LPKGGS-VGFELMDKE-KFGISQFSEQINYQRALEGELARTIETLGPVKSARVHLAMPKP 165

Query: 162 GSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV +             +AI+H+V+++V  L +G+VTV+D  G+LLT 
Sbjct: 166 TLFVREQKSPSASVTLNLQPGRALDKGQIQAIQHMVSSSVAGLPLGNVTVVDQAGRLLTR 225

Query: 220 NEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
           ++ E R++    L     ++   +  I   L   L   N  + V A++N D  +  +  Y
Sbjct: 226 SDSEGRDLNDAQLKYASEVEARYQQRIEAILNPILDQGNVHAQVTAQINFDRSEQTDEKY 285

Query: 279 ----DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV-------------- 320
               +P++   RS + S + Q   +  P        N P  ++                 
Sbjct: 286 QPNANPNNTAIRSHQTSTNVQNG-SPYPGGVPGALSNQPAPANTAPVTNPQQQNNNTANG 344

Query: 321 ---------------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365
                              S  ++  + +  NYE++     T  +   ++RLS+AVVVN 
Sbjct: 345 QQNNNNAQNAGTSTSTAQSSGPSSSSRNDTVNYELDRTIRHTKLNVGDVQRLSVAVVVNY 404

Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425
               +      +    D  + +I  +   A G +  RGD++ + +  F   +        
Sbjct: 405 RDDRKGKAVVLN----DQQIKQIEDLTREAMGYSQTRGDSVNVVNSQFNTTEPTGGD--- 457

Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485
           + F    S  F  ++ A  +L+  L+   L    +R         +      +       
Sbjct: 458 LPFWQQQS-FFEQLMTAGRWLLVALVAFILYRKMVRPQLLRKREAEKAAAEAAAARAAAR 516

Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545
                  +  N         +D     R   +R+++ V  Q   R+  M E +    A +
Sbjct: 517 EEEAAYSVQIN---------KDELDKERKSNNRMSAEVMSQ---RIRDMSENDPRVVALV 564

Query: 546 LRKWARSEI 554
           +R+W  +E+
Sbjct: 565 IREWMSNEL 573


>gi|288962688|ref|YP_003452982.1| flagellar M-ring protein [Azospirillum sp. B510]
 gi|288914954|dbj|BAI76438.1| flagellar M-ring protein [Azospirillum sp. B510]
          Length = 579

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 173/580 (29%), Positives = 276/580 (47%), Gaps = 28/580 (4%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +   +     +  SLGR R+L+LA   L  ++        ++ PH   LY  LE ++  R
Sbjct: 1   MRGTVDSLIDTLRSLGRGRLLVLAGTGLGIVLAVAGMALLLSQPHMTALYSGLEPAEAGR 60

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I+ A+ E  +      +G++ISVP + V + R+ LA +GLPS     GYELFD     G+
Sbjct: 61  IAKAVQEMGVPVNAGFDGTTISVPQADVSRVRMALAEKGLPSRGG-VGYELFDTDKPLGI 119

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN- 181
           TSFMQ I R+RA+EGE+ RTI+++SG+ AARVHIV+P+   F +   +PTASV++R    
Sbjct: 120 TSFMQRINRLRAMEGELGRTIETLSGVEAARVHIVLPEREEFSRSAPKPTASVVVRMRGR 179

Query: 182 -PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS-IVQAIQH 239
                K A +IRHLV+AAVPNL    VTV+DS+G+LL   +    +       +  A + 
Sbjct: 180 AAMDRKQALSIRHLVSAAVPNLKPSAVTVMDSSGELLLTEDDGPGLASARTDGLRVAAET 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
            +   + + L A LG  N R  V AE+    + +R   +DP+S+V RS +  ++ +RS+ 
Sbjct: 240 RVARAVEQMLTARLGAGNVRVQVAAEVETKREVVRSQSFDPNSQVVRSTQTVQEQERSQD 299

Query: 300 SQPESAVTVEQNMPHVS-DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
           S  E  VT EQN+P      +   P+S  +T ++EE  NYEI+  S  T  +   + RLS
Sbjct: 300 SNGEPPVTAEQNLPQRDVRAQSQGPQSSNDTKRQEETVNYEISNVSRETVIEPGDVRRLS 359

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE-NQ 417
           +AV+VN    T   G    + +    L  + ++V +A G +  RGD +T+ +++F++   
Sbjct: 360 VAVLVNGTWKTAPDGTRQYEPRSTEELRRLGELVRSAMGFSEARGDRVTVDNLEFVDLAP 419

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR--------------- 462
                 +     + L+R+  T+I  ++ LV + LV  +GL  L R               
Sbjct: 420 DLTPRPLGDEIAETLTRNIMTLIQWVILLVLSALVILVGLRPLIRRVFPAPGPVAAEASA 479

Query: 463 --LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS--- 517
             L         ++ G +I        A              +           +     
Sbjct: 480 PALAAPAGGPMPQLTGPAIAGAGAAGLAPADAGEAEAAAFGAAPMAPQLGIEETMDQLIE 539

Query: 518 --RINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
              +   V   S  RL  +++   +    ILR W   E+ 
Sbjct: 540 LRTVEGRVRASSIRRLGELVDQYPDEAIDILRSWLYEEVA 579


>gi|261855054|ref|YP_003262337.1| flagellar M-ring protein FliF [Halothiobacillus neapolitanus c2]
 gi|261835523|gb|ACX95290.1| flagellar M-ring protein FliF [Halothiobacillus neapolitanus c2]
          Length = 590

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 118/569 (20%), Positives = 234/569 (41%), Gaps = 35/569 (6%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
             T     R L++   +   +   +    +   P    LY  L   +   +  AL  A  
Sbjct: 28  GFTQSSSFRQLLILVALAATLSFMVGFFLWGQKPSLVPLYTNLGPKESAAVVEALRAAKK 87

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
           ++++S +G +I V  + +   R+ LA +GLP S +  G E+ DK  S G + F+++    
Sbjct: 88  NYQLSADG-AILVDPAQLPAVRMLLAGEGLP-SGNGVGLEMLDKDQSLGTSQFVEQARYQ 145

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEA 190
            A+E E+AR+I++I G+ AARVH+  P    F +   +PTASV++              A
Sbjct: 146 HAIEIELARSIETIQGVSAARVHLATPKQSVFVREQQKPTASVVVELSPGQSLTADQVRA 205

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER---NILGKSLSIVQAIQHEIEMNINK 247
           I HLVA++V  +   +V+V+D  G+LL+ N  +     +  K  +  Q ++      I  
Sbjct: 206 IVHLVASSVAGMKPENVSVIDQRGELLSQNSDDASGMGLTDKQFAYRQRVERAYARQIEA 265

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR-SETSQPESAV 306
            L   +G +  R+ V A+++   Q+     Y P + V  S + +   +   +        
Sbjct: 266 LLTPIVGANQVRAQVSADIDFSRQEGTSETYGPKTGVVLSEQTNDTTRALGDQGINGGVP 325

Query: 307 TVEQNMPHVSDRKVPLPRS------------------LENTDKKEEQSNYEINTKSIATT 348
               N P       P                         + +K E  NY ++     T 
Sbjct: 326 GALSNQPPGGGTVTPQTSGGLQPPANLDVQQYQQIIQTPISTQKNETRNYNVDKDIRHTQ 385

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
           + +  +++L++AV++++  +T+  G++  +   D+ LA I  +VS A G++ +RGD +T+
Sbjct: 386 YASGAVDKLNVAVLLDEKTVTDKDGKTKTEPMSDAELARIKDLVSQAVGLDEQRGDKLTL 445

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
            S+ F+E ++                 F  ++  L   V  LL+  + +  L ++     
Sbjct: 446 ASIPFVEQKIEKVSVPL-----WQQEWFMPLLKNLGLGVAMLLIFLMVVRPLLKMLADKS 500

Query: 469 AKKG--EVGGKSILSPPPISSAVTTGLMPNDNIALDS--SNQDIFSHSRNLQSRINSYVS 524
             +      G ++ +    +     G+      +        D   +   +   + +   
Sbjct: 501 RPEALPHQPGAALPNGTEDNGMNEEGVSFTRQASEGGQIPGPDDEDNLEGVPQLVGAASY 560

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSE 553
                +L   I  + +  A ++++W  SE
Sbjct: 561 ADKLRQLKQSINHDPKAVAAVIKQWTHSE 589


>gi|17548611|ref|NP_521951.1| flagellar M-ring transmembrane protein [Ralstonia solanacearum
           GMI1000]
 gi|17430859|emb|CAD17541.1| probable flagellar m-ring transmembrane protein [Ralstonia
           solanacearum GMI1000]
          Length = 611

 Score =  412 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 130/556 (23%), Positives = 234/556 (42%), Gaps = 49/556 (8%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
              +  +P Y  LY  +  SD   I  AL + N+ +R +D GS+I VP + V +AR+ LA
Sbjct: 64  GMLWSRAPSYRVLYSNVADSDGGAIIAALQQMNVPYRFADGGSAIMVPEANVHEARLKLA 123

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
           AQGLP     +G+EL +    FG + F++++   RALEGE+ARTIQ++  + +ARVH+ +
Sbjct: 124 AQGLPKGGL-AGFELME-NQKFGTSQFVEQVNYQRALEGELARTIQAMQEVQSARVHLAL 181

Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
                F +   +P+ASV+++     +      +AI HL+A++VP+L + +VTV+D +G+L
Sbjct: 182 SKPSVFVREQVKPSASVLLKLYPGRMLDRSQVQAIGHLLASSVPDLPLANVTVVDQSGRL 241

Query: 217 LTAN--EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           L+A+  +    +    L+ V+ I+      I   L   +G DN R+ V A +++D  +  
Sbjct: 242 LSASFQDNASGLDPTQLNYVRDIEQGYIKRIEAILGPVVGEDNVRAQVTANVDLDNTEQM 301

Query: 275 EIVY----DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVP--------- 321
              Y    DP +   RS   S+  Q    +Q         N P  + R +P         
Sbjct: 302 AETYRPNQDPANGAVRSTHTSESTQNKAGAQ-GGVPGALSNQPPTAPRMLPTAPAPAAQQ 360

Query: 322 ------------------------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
                                      +   +  ++   NYE++     T      + RL
Sbjct: 361 AAAGQNGQNGQNGQQQGAAAGTGQAAANTAESSARDTTINYEVDKTVRRTRAAVGTVRRL 420

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           S+AVVVN     +       +   D+ + ++N +V  A G +++RGD++ + +  F    
Sbjct: 421 SVAVVVNYRADGK-----TWKPLSDAEMTKLNALVKDAVGYDAKRGDSVNVVNSQFSGTL 475

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
             +   + +     +  +           +G L++ F  +  L R  N  D         
Sbjct: 476 PTSKDDLPLWKQPEMIHYAIQAAKYGALAIGFLILVFAVIRPLIRSMNKKDEPVTATFVG 535

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
                P               +   S   D       L     ++  +Q    +  + + 
Sbjct: 536 REGEDPNAPIITGAAAPAGPELEGPSVVTDGDEVPDELPQLKQNHDFEQKLETMRRVAQQ 595

Query: 538 NEERFAKILRKWARSE 553
           N    A ++++W  +E
Sbjct: 596 NPRAVAAVIKQWVSNE 611


>gi|114705807|ref|ZP_01438710.1| flagellar M-ring protein [Fulvimarina pelagi HTCC2506]
 gi|114538653|gb|EAU41774.1| flagellar M-ring protein [Fulvimarina pelagi HTCC2506]
          Length = 551

 Score =  412 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 202/550 (36%), Positives = 317/550 (57%), Gaps = 13/550 (2%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           Q  Q   + + LG  ++  L  V L+ ++L     +F++    + LY  L+  DV RI  
Sbjct: 8   QAQQIVSNLSQLGPKKLGALGIVGLLVVVLVGLGSYFLSRADMETLYSGLDRQDVTRIGA 67

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
           AL+EA I F ++  G ++  P S  G+AR+ LA +GLP  S N+GYELFD + S GLTSF
Sbjct: 68  ALTEAGIPFDVTAEGDAVQTPFSQTGEARMLLAEKGLPR-SENAGYELFDNIGSIGLTSF 126

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
           MQE+TRVRALEGEIARTIQ+++ I AARVH+V+ D GSFR+   +P+ASV+IR      +
Sbjct: 127 MQEVTRVRALEGEIARTIQTLANIRAARVHVVLADEGSFRRERRKPSASVVIRTDGSEDF 186

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIVQAIQHEIEMN 244
            SA AIR LVAAA+P +   +VTVL+S G LL + E    +   K   I + +   +E +
Sbjct: 187 GSASAIRSLVAAAIPGMTPQEVTVLNSDGTLLASGEEGVSSAPSKLFGIEKIMSGSVEES 246

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           I + LA +LGV NF+++V A LN D QQI E ++DP+S+VERS+R  K+  +S+ +    
Sbjct: 247 IRRTLAPYLGVGNFQTSVTASLNTDRQQISERIFDPESRVERSVRSMKEMDQSQNTTQNE 306

Query: 305 AVTVEQNMPHVSD--RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
           AV +EQ++    +         S +  +++EE +NYEIN K+I TT + Y++E+LSIAVV
Sbjct: 307 AVGIEQDIQAADEVEGAPGGESSSDEKERREELTNYEINEKTIQTTSEGYEVEKLSIAVV 366

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           +N+ RL   +G +A    ID+ +AEI  +V++A+G +  RGD + +T++DF++       
Sbjct: 367 INRQRLAAAIGENATDTDIDARIAEIESLVASASGYSEARGDQLKVTAVDFVDAAGSLEP 426

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482
                F ++  R   T+INAL  LV  +LV + GL    R     +  + E    + +  
Sbjct: 427 IPGPGFSEMFMRQSGTLINALTILVVAVLVIWFGLKPAIRALAAPEPAESEADNDNSIET 486

Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542
                 V  G+      +L  +N      ++     ++   ++    RL  +++I+E + 
Sbjct: 487 L---QRVGEGMESGSVGSLAPAN-----GTQGFVEDLSG-AARSPQARLEALVDIDENQA 537

Query: 543 AKILRKWARS 552
           A +L++W + 
Sbjct: 538 ANVLKQWLKQ 547


>gi|268589960|ref|ZP_06124181.1| flagellar M-ring protein FliF [Providencia rettgeri DSM 1131]
 gi|291314677|gb|EFE55130.1| flagellar M-ring protein FliF [Providencia rettgeri DSM 1131]
          Length = 561

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 122/532 (22%), Positives = 237/532 (44%), Gaps = 38/532 (7%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
              ++ SP Y  L   L   D   I   L++ N+ ++I+DNGS+I VP+  V + R+ LA
Sbjct: 44  LLLWLRSPDYRVLLSNLSAKDGGDIVGQLTQMNVPYQIADNGSAILVPADKVHELRLKLA 103

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
             GLP    N+G+EL DK   FG++ F ++I   RALEGE++RTI+S+S + +ARVH+ +
Sbjct: 104 QSGLPKGG-NTGFELLDKEQ-FGISQFSEQINYQRALEGELSRTIESLSPVQSARVHLAI 161

Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           P    F +    PTASV +  +   +       AI H+V+++V  L   +V ++D  G+L
Sbjct: 162 PKPTLFVREQKLPTASVTVGLLPGRMLDEGQISAIVHMVSSSVTGLTASNVIIVDQAGRL 221

Query: 217 LTANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LT N+  +++     + + + ++  ++  I   L+  +G  N  + V A+++    +   
Sbjct: 222 LTNNDNSQQSANSAQIKMTKEMESHLKQRIEDILSPLVGRANIHAQVTAQMDFSKVEQTS 281

Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMP-------------HVSDRK 319
             Y P+   + +   S+   +S  +       V     N P             +    +
Sbjct: 282 EEYKPNQTPDSAAIRSRQNSQSMQNNNGGTGGVPGALSNQPVSAPSAPIETNKDNKDGAQ 341

Query: 320 VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQG 379
               R+  +  + +E +NYE++ K   T      ++RLS+AV+VN        G    + 
Sbjct: 342 TANNRNSVSNSQSDETTNYEVDRKISHTQRQIGVVDRLSVAVIVNYHSQDGENG-PEMKP 400

Query: 380 KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATV 439
                L +I  +   A G ++ RGD++ IT+  F            +       +  A +
Sbjct: 401 LPPEMLQQIEALTREAMGFSTARGDSLNITNSLFTNEAPVEEAPSLLE----SPQFIAQL 456

Query: 440 INALVFLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498
           ++    L+  ++  F+    ++        A++ +   +  ++    +  V    +  + 
Sbjct: 457 LDYGKILLIAIIAWFMWRFGIKPQWVKYRKAQQAQAEAEVFVATQLKTPLVVDEAIDEE- 515

Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
                   D  +  R  + R+++ +  Q   R+  M E + +  A ++R+W 
Sbjct: 516 -------MDEQTRRRLTRQRVSAEIQSQ---RIREMAEKDPQIVAMVIRQWL 557


>gi|260598447|ref|YP_003211018.1| flagellar MS-ring protein [Cronobacter turicensis z3032]
 gi|260217624|emb|CBA31913.1| Flagellar M-ring protein [Cronobacter turicensis z3032]
          Length = 571

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 132/552 (23%), Positives = 235/552 (42%), Gaps = 65/552 (11%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +   P Y  LY  L   D   I   L++ NI +  +DNG+SI VP+  V   R+ LA QG
Sbjct: 46  WAKQPEYRVLYSNLSDQDGGAIVTQLTQMNIPYNFADNGASIMVPAEKVYDLRLRLAQQG 105

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP  
Sbjct: 106 LPKGGA-VGFELMDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPKP 163

Query: 162 GSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT- 218
             F +    P+ASV +              A+ H+V++AV  L  G+VT++D  G+LLT 
Sbjct: 164 SLFVREQKSPSASVTLSLQPGRTLDDGQVAAVVHMVSSAVAGLPPGNVTLVDQAGRLLTQ 223

Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
           +    R++    L     ++  I+  I   LA  +G  N  + V A+++   ++  E  Y
Sbjct: 224 SGTGARDLNDAQLKYASDVEGRIQRRIESILAPIVGSGNVHAQVTAQIDFSNKEQTEEQY 283

Query: 279 DPDSK----VERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRK--------------- 319
            P+S       RS +L+ + Q    + P        N P  ++                 
Sbjct: 284 RPNSDPSQMAVRSRQLNTNDQVGAGN-PGGVPGALSNQPAPANSAPIDAPAGQNANGQNA 342

Query: 320 -----------------VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
                                 S  ++ +++E +NYE++     T  +   ++RLS+AVV
Sbjct: 343 NGQNANGQNAQRTQSTSTTGASSGPHSSQRDETTNYEVDRTIRHTKMNVGDVQRLSVAVV 402

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           VN  +L    G           L +I  +   A G + +RGDT+ + +  F  +   +  
Sbjct: 403 VNYRQL----GNGKPLALTADQLKQIEDLTREAMGYSDKRGDTLNVVNSPFTAS---DEA 455

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482
             ++ F    +     +++A  +LV  ++   L   A+R        +   V        
Sbjct: 456 GAELPFWKQQA-FIDQLLSAGRWLVVLIVAWLLWRKAVRPQLQRRAEEVKRV-------- 506

Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542
                 +       +       ++D  +  R    R+++ V  Q   R+  M + +    
Sbjct: 507 ----QEIQQQRQEVEESVEVRLSKDEQTQQRRANQRLSAEVMSQ---RIREMSDNDPRVV 559

Query: 543 AKILRKWARSEI 554
           A ++R+W  +E+
Sbjct: 560 ALVIRQWMSNEL 571


>gi|299131954|ref|ZP_07025149.1| flagellar M-ring protein FliF [Afipia sp. 1NLS2]
 gi|298592091|gb|EFI52291.1| flagellar M-ring protein FliF [Afipia sp. 1NLS2]
          Length = 517

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 126/533 (23%), Positives = 228/533 (42%), Gaps = 24/533 (4%)

Query: 25  LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSIS 84
           + +V +  +  F      V +P    LY  L   D + +   L    I + + ++G+ I 
Sbjct: 1   MLAVTMALLGFFGFVILRVTAPQMVTLYTDLSYDDASGVMKELDRQGIPYELKNDGAIIM 60

Query: 85  VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144
           VP   V + R+ LA           GYE+FDK ++ G TSF+Q +  +RALEGE+ARTI+
Sbjct: 61  VPKDKVTRLRMKLAEG-GLPKGGGVGYEIFDKSDTLGSTSFVQNVNHLRALEGELARTIK 119

Query: 145 SISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDM 204
           SI  I A RVH+V+PD   F +    P+A++++R       +   AIRHLVA++V  L  
Sbjct: 120 SIDRIQAVRVHLVLPDRPLFSREKPEPSAAIVVRVRGALEPQQVRAIRHLVASSVNGLKP 179

Query: 205 GDVTVLDSTGKLLTANEMERNILGKSLSIVQAI--QHEIEMNINKALAAFLGVDNFRSAV 262
             V+++D  G+LL     + N +G   +  + I  ++ +   I   + + +G    R  +
Sbjct: 180 QRVSIVDENGQLLADGSGDANGMGDVGADERRIAYENRLRKQIESIVTSVVGAGRARVQL 239

Query: 263 VAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPL 322
            A+ + +        +DP+ +V RS +  +++  +   Q    VTV   MP  + ++   
Sbjct: 240 SADFDYNKVTETSDKFDPEGRVLRSSQTREESSATSNGQ-NGQVTVNNEMPG-NQQQNAA 297

Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382
               + + K EE +NYEI+  +     +  +++R+S+AV+V+        G      +  
Sbjct: 298 NAGKDQSKKSEEINNYEISRTTKTEVTEAGRVQRVSVAVLVDGTYSKNEKGDMVYAPRSK 357

Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDIL---SRHFATV 439
             L  I  +V +A G    RGD + + ++ F E            ++ +           
Sbjct: 358 EDLERIATLVRSAIGFEKNRGDQVDVVNLRFAEAPAAVPLPEPTGWLSVFQFTKDDVMYF 417

Query: 440 INALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNI 499
           I   V  +  ++V F+ +  L +    +D     V       P  ++  V T        
Sbjct: 418 IELGVMSLLAIVVVFMVVRPLVKRVLAEDPPPASVPALPEAEPAAVAGPVHTAATAQ--- 474

Query: 500 ALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
                            +++   V  QS  R+  + + N      I+R+W   
Sbjct: 475 -------------MIDVAQVQGQVHAQSVHRVGELADRNPNETVSIIRQWLTE 514


>gi|148253400|ref|YP_001237985.1| flagellar MS-ring protein [Bradyrhizobium sp. BTAi1]
 gi|146405573|gb|ABQ34079.1| Flagellar basal body M-ring protein [Bradyrhizobium sp. BTAi1]
          Length = 535

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 137/549 (24%), Positives = 227/549 (41%), Gaps = 18/549 (3%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +  LL F K    LG  R+  + +V    I  F      V +P    L+  L + D + I
Sbjct: 1   MQGLLDFLKG---LGAARLTAMIAVTAALIGFFGFVIMRVTAPQMTTLFTDLGMDDSSSI 57

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    I F I + GS I VP   V + R+ LA           GYE+FDK ++ G T
Sbjct: 58  IKDLERQGIPFEIRNEGSVILVPKDKVTRLRMKLAEG-GLPKGGGVGYEIFDKSDALGTT 116

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
           SF+Q I  +RALEGE+ARTI++I  I AARVH+V+P+   F +    P+AS+++R     
Sbjct: 117 SFVQNINHLRALEGELARTIRAIDRIQAARVHLVLPERPLFSRETPEPSASIVVRVRGAL 176

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEM 243
                 AIRHLVA+AV  L    V+++D  G+LL                    +  +  
Sbjct: 177 DAAQIRAIRHLVASAVNGLKPQRVSIVDEAGQLLADGTQTDIDQQVGDERRNTFEKRMRK 236

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            +   +++ +G    R  + A+ + +        YDP+ +V RS +  ++  +S +S+  
Sbjct: 237 QVEDIVSSVVGAGRARVQLSADFDFNRITQTSDRYDPEGRVLRSSQTREE--QSASSESN 294

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
             VTV   +P     +       + + K EE +NYEI+  +     +  ++ R+S+AV+V
Sbjct: 295 GQVTVNNELPGNQQNQQQQQPPRDQSKKTEETNNYEISRTTKTEVTEAGRVNRISVAVLV 354

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           +        G    + +    L  I  +V +A G + +RGD + + ++ F +        
Sbjct: 355 DGAYSKNEKGELVYKERSKEELDRIAALVRSAIGFDQKRGDQVEVVNLKFADAPTVPQIN 414

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
               F+ +L      V+  +   V  LL   +    +R L     A            P 
Sbjct: 415 EPSGFLGMLQFTKDDVMYVIELAVMMLLGIVVVFMVVRPLVKKIIASDEVAAALKSAVPA 474

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
                            L               +++   V  QS  R+  + + N    A
Sbjct: 475 LTDETAQAQAHAQQTATL------------IDVAQVQGQVHAQSVHRVGELADRNPGEAA 522

Query: 544 KILRKWARS 552
            I+R+W   
Sbjct: 523 AIIRQWLAE 531


>gi|58760481|gb|AAW82147.1| FliF [Stenotrophomonas maltophilia]
          Length = 545

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 119/553 (21%), Positives = 229/553 (41%), Gaps = 24/553 (4%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++  Q+F    SL  TR L L ++I V +   ++  F+   P    LY  L+       +
Sbjct: 13  EKAGQWFDRLQSLQITRRLGLMAMIAVAV---VSVFFWSQKPGMVPLYTGLDQKATAEAT 69

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L  A I F +      I+VP   +  AR+ LA  GL + S   G+EL ++   FG++ 
Sbjct: 70  DLLRAAQIPFALDPATGGITVPEKNLHDARLKLAGSGL-TDSGKLGFELMERDPGFGVSQ 128

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           F++      ALE E++RTI ++  +  +RVH+ +P   +F +     +ASV +       
Sbjct: 129 FVESARYQHALETELSRTINTLRPVRDSRVHLAIPKPSAFTRQRDVASASVTLELRGGQQ 188

Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHE 240
            +    +AI H+VAA++P+L    VTV+D +G++L+      E  +       V+  +  
Sbjct: 189 LERSQVDAIVHMVAASIPDLAPERVTVVDQSGRMLSITDPNSEAAVNAAQFEQVRRQETS 248

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I + L    G       V  +++    +    +Y+ + +  RS ++S++   + T 
Sbjct: 249 FNQRIRELLEPMTGPGRVNPEVSVDMDFSVTEEARELYNGEPQKLRSEQMSENT--TSTP 306

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
            P+       N P    +  P          K    NYE++     T     +++R+S+A
Sbjct: 307 GPQGVPGATSNSPPGQ-QAAPATAQTPTESSKNATRNYELDRTLQHTRQPAGRIKRVSVA 365

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           V+V+        G+ + Q    + L  +  +V  A G N+ RGDT+++ +  F+ +    
Sbjct: 366 VLVDNVPRAGANGKMSPQPLSAAELTRVEALVKQAVGFNAERGDTVSVMNAPFVRDTTPV 425

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
            G                V +A   L+G ++V  L    LR        +      +   
Sbjct: 426 EGPA--------WWELPWVHDAGRMLLGAVVVLALLFGVLRPALRAITGQ-----NRKND 472

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
            P          L+ +D + L +   D  S +      +     ++        ++ + +
Sbjct: 473 EPALEPHTADVQLVDDDGMPLPALGADRASLAGPDALALPVDSYEERLRMAREAVKTDSK 532

Query: 541 RFAKILRKWARSE 553
           R A++++ W  ++
Sbjct: 533 RVAQVVKGWVAND 545


>gi|167892353|ref|ZP_02479755.1| flagellar MS-ring protein [Burkholderia pseudomallei 7894]
          Length = 495

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 121/434 (27%), Positives = 199/434 (45%), Gaps = 15/434 (3%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 58  WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 117

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++SI+ + AARVH+ +P  
Sbjct: 118 LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 175

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++      V    +  A+  +V+++VP++   +VT++D  G LLT 
Sbjct: 176 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 235

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 236 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 295

Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH--------VSDRKVPLPRSLEN 328
           P+   ++S   S+    S     S          N P          S+ +   P +   
Sbjct: 296 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 355

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           +D+K+  +NYE++            ++RLS+AVVVN    T+  GR   Q      LA++
Sbjct: 356 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQV 415

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G + +RGD++ + +  F       +        D++           V    
Sbjct: 416 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 475

Query: 449 TLLVTFLGLHALRR 462
             L       ALRR
Sbjct: 476 AALYFMFVRPALRR 489


>gi|254470345|ref|ZP_05083749.1| flagellar M-ring protein FliF [Pseudovibrio sp. JE062]
 gi|211960656|gb|EEA95852.1| flagellar M-ring protein FliF [Pseudovibrio sp. JE062]
          Length = 528

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 141/530 (26%), Positives = 249/530 (46%), Gaps = 9/530 (1%)

Query: 28  VILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPS 87
           +  + I LF        +P    L+  L + D   I   +    + + +  NG S+ VP 
Sbjct: 1   MAALLIGLFSFIIVRATAPQMVPLFTDLTLEDAAAIVSQVESQGVSYELGVNGRSVLVPQ 60

Query: 88  SMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSIS 147
             V + R+ LA  GLP S    GYE+FDK ++ G TSF+Q + R RALEGE++RTI+SI 
Sbjct: 61  ENVHRLRMTLAEAGLP-SGGGVGYEIFDKTDTLGATSFVQNLNRTRALEGELSRTIRSIG 119

Query: 148 GIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDV 207
            I +ARVH+V+P+   F++    PTAS+ I+           AI+HLVA AV  L+   V
Sbjct: 120 RIASARVHLVIPEKQLFQRDREPPTASIAIKVQGSLTNGQIRAIQHLVATAVEGLEPSYV 179

Query: 208 TVLDSTGKLLTANEMERNILGKSLSIVQA---IQHEIEMNINKALAAFLGVDNFRSAVVA 264
           +++D  G LL +   ++  L    S+ +    ++  +   + + L   +G    R  V A
Sbjct: 180 SIVDERGTLLASGTGDKEGLAGGSSLDERRLTMESRLRQQVEEILNNVVGTGRARVRVAA 239

Query: 265 ELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPR 324
           E+N + +   + ++DPD +V RS +  ++   S     E  V+V   +P+  D       
Sbjct: 240 EINYNRKTETQELFDPDGQVLRSSQSKEENASSTNG--EDTVSVGNQLPNA-DAAGSSAG 296

Query: 325 SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY 384
           S ++++  EE  NYEI+  ++   ++   LERLS+AV+V+    T   G    Q +    
Sbjct: 297 SKDSSNVSEEILNYEISKSTVTEIYEAGGLERLSVAVLVDGTYTTSEDGTQTYQPRSREE 356

Query: 385 LAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN-AL 443
           L +I  +V  A G +  RGDT+ + +M F+E  L +    +    D             +
Sbjct: 357 LEQIATLVRTAVGFSKHRGDTVEVVNMRFVEAPLSDFADGEGGLFDFTRADIMKFAELGV 416

Query: 444 VFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIA-LD 502
           +F++  LL+ F     ++R+   DD  +  + G  +   P  +    +       +  ++
Sbjct: 417 LFVITVLLLIFAVSPLMKRILAKDDEPEAAIEGGGVQMLPDGTLVTESPAQVEGIVGEME 476

Query: 503 SSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
           +   +I +      +++ + + + S  ++  MIE +      I+R W   
Sbjct: 477 AVPTEIPTAEWIEDAKMQAALHQSSIKQISEMIEDSPSEAVNIVRGWLNE 526


>gi|167917106|ref|ZP_02504197.1| flagellar MS-ring protein [Burkholderia pseudomallei BCC215]
          Length = 490

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 121/434 (27%), Positives = 199/434 (45%), Gaps = 15/434 (3%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 56  WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 115

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++SI+ + AARVH+ +P  
Sbjct: 116 LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 173

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++      V    +  A+  +V+++VP++   +VT++D  G LLT 
Sbjct: 174 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 233

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 234 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 293

Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH--------VSDRKVPLPRSLEN 328
           P+   ++S   S+    S     S          N P          S+ +   P +   
Sbjct: 294 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 353

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           +D+K+  +NYE++            ++RLS+AVVVN    T+  GR   Q      LA++
Sbjct: 354 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQV 413

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G + +RGD++ + +  F       +        D++           V    
Sbjct: 414 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 473

Query: 449 TLLVTFLGLHALRR 462
             L       ALRR
Sbjct: 474 AALYFMFVRPALRR 487


>gi|167822258|ref|ZP_02453729.1| flagellar MS-ring protein [Burkholderia pseudomallei 9]
          Length = 488

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 121/434 (27%), Positives = 199/434 (45%), Gaps = 15/434 (3%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 54  WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 113

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++SI+ + AARVH+ +P  
Sbjct: 114 LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 171

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++      V    +  A+  +V+++VP++   +VT++D  G LLT 
Sbjct: 172 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 231

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 232 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 291

Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH--------VSDRKVPLPRSLEN 328
           P+   ++S   S+    S     S          N P          S+ +   P +   
Sbjct: 292 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 351

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           +D+K+  +NYE++            ++RLS+AVVVN    T+  GR   Q      LA++
Sbjct: 352 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQV 411

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G + +RGD++ + +  F       +        D++           V    
Sbjct: 412 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 471

Query: 449 TLLVTFLGLHALRR 462
             L       ALRR
Sbjct: 472 AALYFMFVRPALRR 485


>gi|222053602|ref|YP_002535964.1| flagellar M-ring protein FliF [Geobacter sp. FRC-32]
 gi|221562891|gb|ACM18863.1| flagellar M-ring protein FliF [Geobacter sp. FRC-32]
          Length = 522

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 132/558 (23%), Positives = 245/558 (43%), Gaps = 51/558 (9%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           + + L +      SL  ++ LI+A V    ++ F A  F  N   Y  L+  L   D   
Sbjct: 1   MPEGLKKLLDPFLSLPTSKRLIVAGVAACSLLAFAALIFVANRTDYRPLFANLTTEDAGE 60

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L +  + ++IS +G +I VPS  V + R+ LA +GLP      G+E+FD+ N FG+
Sbjct: 61  IVKKLKDQKVAYQISADGKAILVPSDKVYELRLSLAGEGLPQGGG-IGFEIFDRKN-FGM 118

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T F+Q++   RAL+GE++RTI  ++G+  ARVH+V+P+   F+     PTASV+++  + 
Sbjct: 119 TEFVQKLNYQRALQGELSRTIAQLAGVEQARVHLVIPEKSLFKDSEKPPTASVVLKMKSN 178

Query: 183 SVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAI 237
              +    + + HLV++A+  +D  +VTVLDS GK+L+    ++    +        +  
Sbjct: 179 RTLRENEVQGVVHLVSSAIEGMDTENVTVLDSRGKVLSRTGPSDATGKLTSTMQETQRNY 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           +  +E  +   L   +G     + V A  +    +  E  YDP++   RS + S++ +  
Sbjct: 239 EKNLEERLQSLLDKVVGSGRSVARVSATFDFKQVEKYEEKYDPETAAVRSEQRSEE-KAG 297

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
            T+       V+ NM     R  P   +     K +E  NYE++  +         L ++
Sbjct: 298 ATNIAAGVPGVQTNM----GRTAPGAGTTGGGSKSDETLNYEVSRTTARIIEPVGSLTKV 353

Query: 358 SIAVVVNKGR-----LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
           S+A++V+              ++  Q +    L +I  +V ++ G N+ RGD +T+ ++ 
Sbjct: 354 SVAILVDGKYEAPAAAKAGAAKAKYQPRTPDELQKIESLVKSSVGFNAERGDQVTVANIP 413

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F E     S         I+     T++  L+   G   + F  +  L R+         
Sbjct: 414 FQETGDMGSAEDAWWNAPIV----MTLLKNLLIAGGFFAIIFFVIKPLMRM--------- 460

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
                                +P+   +     +D+     N   +    +   + L L+
Sbjct: 461 ---------------------LPHRPPSFQPVQEDLEMIQLNEAHKQELALQTLNQLELI 499

Query: 533 HMIEINEERFAKILRKWA 550
             ++ +  + A+IL+ W 
Sbjct: 500 EKVKQDPYQVAQILQNWL 517


>gi|271500086|ref|YP_003333111.1| flagellar M-ring protein FliF [Dickeya dadantii Ech586]
 gi|270343641|gb|ACZ76406.1| flagellar M-ring protein FliF [Dickeya dadantii Ech586]
          Length = 574

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 126/557 (22%), Positives = 231/557 (41%), Gaps = 67/557 (12%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
              +   P Y  LY  L   D   I   L + NI +R ++NG++I +P+  V + R+ LA
Sbjct: 44  LSLWARGPDYRALYTNLNERDGGSIVSELGKMNIPYRFAENGAAILIPADKVYETRLKLA 103

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
            QGLP   +  G+EL D+   FG++ F ++I   RALEGE+ART++++  I +ARVH+ +
Sbjct: 104 QQGLPKGGA-VGFELLDQE-KFGISQFSEQINYQRALEGELARTMETLGPIQSARVHLAI 161

Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           P    F +    P+A+V +              AI +LV+++V  L    VTV+D TGKL
Sbjct: 162 PKPSLFVREQKSPSAAVTVTLQPGRALDDSQINAITYLVSSSVAGLPADKVTVVDQTGKL 221

Query: 217 LTANEM-ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LT N+   R++    L     ++   +  I   L   +G  N  + V A+++   ++  +
Sbjct: 222 LTQNDGSGRDLNAAQLKYANEVESNYQRRIEAILTPVVGAGNVHAQVTAQIDFANREQTD 281

Query: 276 IVYDPDSK----VERSIRLSKDAQRSE----------TSQPESAVTVEQNMPH------- 314
             Y P+        RS + S+  QR            ++ P  A T   + P        
Sbjct: 282 EQYQPNQTPNQAAVRSQQTSQSDQRGGPNVGGVPGALSNTPTPAPTAPISTPPTNNANNA 341

Query: 315 -----------------VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
                             +        +     ++++  NYE++     T      ++RL
Sbjct: 342 NNANNTNNANNANAAGNNTQTSASNSANQTFNSRRDQTINYEVDRTIRHTKQSTGSVQRL 401

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           S+AVVVN  +  +           D  L +I  +V  + G +S RGD++ + +  F    
Sbjct: 402 SVAVVVNYTQGEDGK----PAALSDEQLKKIEALVRESMGFSSDRGDSVNVVNTPFT--- 454

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
           + ++   ++ F    +  F  +I A  +L+  ++   +    +R         +      
Sbjct: 455 VTDTSAGELPFWKKQA-FFDLLIEAGRWLLVLIVGWIMYRKLVRPQLQRRSQIQQAAEAA 513

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
           + L       +VT   M  +               +  + R ++ +  Q   R+  + E 
Sbjct: 514 AALRGQDSDVSVTISAMEEE-------------IQKKSEQRAHAEMHSQ---RIRELAEN 557

Query: 538 NEERFAKILRKWARSEI 554
           +    A ++R W  +E+
Sbjct: 558 DPRVVALVIRHWMSNEL 574


>gi|261821173|ref|YP_003259279.1| flagellar MS-ring protein [Pectobacterium wasabiae WPP163]
 gi|261605186|gb|ACX87672.1| flagellar M-ring protein FliF [Pectobacterium wasabiae WPP163]
          Length = 569

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 119/550 (21%), Positives = 241/550 (43%), Gaps = 58/550 (10%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
              +   P Y  LY  +   D   I   L++ NI +R ++NG +I +P++ V + R+ LA
Sbjct: 44  LTLWAKGPDYRVLYSNINDRDGGAIVSELTKLNIPYRFAENGGAIMIPAANVYETRLRLA 103

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
             GLP   +  G+EL DK   FG++ F ++I   RALEGE++RTI+++  +  ARVH+ +
Sbjct: 104 QLGLPKGGA-VGFELLDKE-KFGISQFSEQINYQRALEGELSRTIETLGPVQNARVHLAI 161

Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           P    F +    P++SV +              +I ++V+++V  L   +VTV+D TG+L
Sbjct: 162 PKPSLFVREQKSPSSSVTLTLQPGRALDEGQINSIVYMVSSSVAGLPPDNVTVVDQTGRL 221

Query: 217 LT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LT A    R++    L     ++   +  I   +A  +G+ N  + V A+++   ++  +
Sbjct: 222 LTQAGGSGRDMNAAQLKYSNEVEAMYQRRIESIIAPMVGMGNVHAQVTAQIDFSAREQTD 281

Query: 276 IVYDPDSKVERSIRLSKDAQRSE------------------------------TSQPESA 305
             Y P+   +++   S+   +SE                               +    A
Sbjct: 282 EQYQPNQPPDKAAVRSQQTSQSEQKGGPNVGGVPGALTNQPAPAPTAPIATPPNNANNQA 341

Query: 306 VTVEQNMPHVSDRKVPLPRSLENTD-KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
              +QN  +    +      ++ ++ + +  +NYE++   + T H    ++RLS AV+VN
Sbjct: 342 GAGQQNQNNAGGTQANANAVIQTSNVRNDATTNYEVDKTILHTKHSTGGVKRLSAAVIVN 401

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424
                   G+       +  + +I  +   A G ++ RGDT+ + +  F++N     G+ 
Sbjct: 402 YQP-PGEDGKPV--ALTEDQIKQIETVAREAMGFSTERGDTLNVVNTPFMDN---TEGSS 455

Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPP 484
           ++ F    +  F  ++ A  +L+  ++   L    +R      + ++      + L+   
Sbjct: 456 ELPFWQKQA-FFDLLMEAGRWLLVLIVAWILWRKLVRPQLRKKELQQEAALAAASLNK-- 512

Query: 485 ISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAK 544
                      ND+  + + +       R  Q R+++ +      R+  + E +    A 
Sbjct: 513 ----------GNDDDVVVNLSTSEIEQQRKSQQRVSAEMQS---NRIRELAENDPRVVAL 559

Query: 545 ILRKWARSEI 554
           ++R+W  +E+
Sbjct: 560 VIRQWMSTEL 569


>gi|220935138|ref|YP_002514037.1| flagellar FliF M-ring protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996448|gb|ACL73050.1| flagellar FliF M-ring protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 552

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 125/566 (22%), Positives = 234/566 (41%), Gaps = 40/566 (7%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           L    +    L   R + L   +   + L  +   ++  P Y  LY  L   +  +++ A
Sbjct: 8   LSNQVRGFGRLPMERQIGLIVALAAAVALVSSLFMWMTRPSYTVLYPNLAEQESGQVAEA 67

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L   NI +R+     +++VP+  +  AR+ LA +GLP ++   G+EL ++    G +  +
Sbjct: 68  LGRHNIPYRLDSATGAVTVPARHLHDARLKLATEGLPRATG-FGFELLEQDQGLGTSRLI 126

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
           +     RA+EGE+AR+I ++S + +ARVH+ +P    F +  ++P+ASV++         
Sbjct: 127 ENARYHRAIEGELARSIATLSSVESARVHLALPAQSVFVRDRSKPSASVLVNLYAGRTLD 186

Query: 187 S--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEI 241
                 I HLVA++VP+L+   VTV+D  G+LLT    + +      + L   + ++   
Sbjct: 187 ESRIAGIVHLVASSVPDLEPERVTVVDQRGRLLTQPAGDVDGVMASTQQLDFTRRMEESY 246

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
              I   L   LG D  R+ V A+L+    +     +DP+  V RS ++S+D   S    
Sbjct: 247 VRRIMDILTPILGADAVRAQVAADLDFSRIERTTEAFDPEFSVVRSEQISEDE--SRGGG 304

Query: 302 PESAVTVEQNMPHVSD------RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
                    N P  +               +  +  +    NYE++            L 
Sbjct: 305 MMGVPGALTNQPPEAGVIAEEGNGANGQAQVPGSSSRRTVRNYEVDRTVSHIREAPGGLR 364

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           RLSIAVVV+        G        +  +  I  +V  A G ++RRGD+I + +  F  
Sbjct: 365 RLSIAVVVDHKEERNEAGELERVPFTEQEMERITTLVREAVGFDARRGDSINVINASFRP 424

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL------HNIDDA 469
            +          + +        V++    ++  ++V  L L  +R L            
Sbjct: 425 VEALELPPEPPIWQEPW------VVDLAKTILAVIMVIVLALTVVRPLLKGLAERGAAAR 478

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
           ++ ++G  ++         +  G  P    AL   N       +N + +++S        
Sbjct: 479 REDQLGHLALPEGELGEEQLRLGQQPQVQGALPGPNT-----KKNYEDQLDSA------- 526

Query: 530 RLLHMIEINEERFAKILRKWARSEIE 555
               M+  + +R A++++ W  S+  
Sbjct: 527 --RGMVREDPKRVAQLMKTWIASDGA 550


>gi|166712032|ref|ZP_02243239.1| flagellar MS-ring protein [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 574

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 114/569 (20%), Positives = 239/569 (42%), Gaps = 30/569 (5%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++  Q+F    SL  TR L + ++I + +   +A  F+   P Y +LY  L+       +
Sbjct: 15  EKAGQWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAA 74

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L  A I ++I     +ISVP   +  AR+ LA  GL    +  G+EL +K   FG++ 
Sbjct: 75  DLLRTAQIPYKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQ 134

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           F++      ALE E++RTI ++  +  ARVH+ +P   +F +     +ASV++       
Sbjct: 135 FVENARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQG 194

Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240
            +    +AI +LVA+++P++    VTV+D +G++L+  +   +          V+  +  
Sbjct: 195 LERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESS 254

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I + L    G          +++    +    +Y+ +    RS +++  +  +  +
Sbjct: 255 YNQRIRELLEPMTGPGRVNPETSVDMDFSVVEEARELYNGEPAKLRSEQVNDTS--TTAT 312

Query: 301 QPESAVTVEQN--------------MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346
            P+       N                  +        +      K    NYE++     
Sbjct: 313 GPQGPPGATSNSPGQPPAPAAAGAPGTPAAANGQATAAAAPTESSKSATRNYELDRTLQH 372

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
           T     +++R+S+AV+++        G+  +Q    + L  I  +V  A G ++ RGDT+
Sbjct: 373 TRQPAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQAVGFDAARGDTV 432

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHN 465
           ++ +  F+   +      +      +      ++ A    V  L + F  +   LR+L  
Sbjct: 433 SVMNAPFVREAVAGEEGPKWWEDPRVQYGLRLLVGA----VVVLALLFGVVRPTLRQLTG 488

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
           +   K+ +  G +  +P          ++ +++  L    +D  S  +  +  I    + 
Sbjct: 489 VTPIKEKQRKGGNDDTPQN----ADVRMVDDEDSLLPQMGEDTASIGQERKPAIALPDAY 544

Query: 526 QSDLRL-LHMIEINEERFAKILRKWARSE 553
           +  +R+    ++ + +R A++++ W  SE
Sbjct: 545 EERMRVAREAVKADSKRVAQVVKGWVASE 573


>gi|213419965|ref|ZP_03353031.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 551

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 127/533 (23%), Positives = 227/533 (42%), Gaps = 52/533 (9%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 44  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 103

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 104 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 161

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +              A+ HLV++AV  L  G+VT++D +G LLT
Sbjct: 162 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 221

Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  E  
Sbjct: 222 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 281

Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------------HVSDRKV 320
           Y P+    ++   S+    SE      P        N P                + +  
Sbjct: 282 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 341

Query: 321 PLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373
           P   +  N++        + E SNYE++     T  +   +ERLS+AVVVN   L +   
Sbjct: 342 PQTSTSTNSNNAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP 401

Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433
                      + +I  +   A G + +RGDT+ + +  F      ++   ++ F    S
Sbjct: 402 L----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDNTGGELPFWQQQS 454

Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493
                ++ A  +L+  ++   L   A+         ++ +   +          AV   L
Sbjct: 455 -FIDQLLAAGRWLLVLVVAWILWRKAVHPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRL 512

Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546
             ++ +    +NQ           R+ + V  Q   R+  M + +    A ++
Sbjct: 513 SKDEQLQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVI 551


>gi|167900849|ref|ZP_02488054.1| flagellar MS-ring protein [Burkholderia pseudomallei NCTC 13177]
          Length = 500

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 121/434 (27%), Positives = 199/434 (45%), Gaps = 15/434 (3%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 56  WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 115

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++SI+ + AARVH+ +P  
Sbjct: 116 LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 173

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++      V    +  A+  +V+++VP++   +VT++D  G LLT 
Sbjct: 174 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 233

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 234 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 293

Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH--------VSDRKVPLPRSLEN 328
           P+   ++S   S+    S     S          N P          S+ +   P +   
Sbjct: 294 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 353

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           +D+K+  +NYE++            ++RLS+AVVVN    T+  GR   Q      LA++
Sbjct: 354 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQV 413

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G + +RGD++ + +  F       +        D++           V    
Sbjct: 414 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 473

Query: 449 TLLVTFLGLHALRR 462
             L       ALRR
Sbjct: 474 AALYFMFVRPALRR 487


>gi|167579440|ref|ZP_02372314.1| flagellar MS-ring protein [Burkholderia thailandensis TXDOH]
          Length = 518

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 122/443 (27%), Positives = 199/443 (44%), Gaps = 15/443 (3%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 78  WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 137

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++S++ + AARVH+ +P  
Sbjct: 138 LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTVESVNAVRAARVHLAIPKP 195

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++      V    +  AI  LV+++VP++   +VT++D  G LLT 
Sbjct: 196 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAITRLVSSSVPDMPAKNVTIVDQDGNLLTQ 255

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 256 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYA 315

Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH--------VSDRKVPLPRSLEN 328
           P+   ++S   S+    S     S          N P          S+ +   P +   
Sbjct: 316 PNGTPQQSAIRSQQTSTSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAAPAATPV 375

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           +D+K+  +NYE++            ++RLS+AVVVN    T+  GR   Q      LA++
Sbjct: 376 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLTADKLAQV 435

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G + +RGD++ + +  F       +        D++           V    
Sbjct: 436 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 495

Query: 449 TLLVTFLGLHALRRLHNIDDAKK 471
             L       ALRR         
Sbjct: 496 AALYFMFVRPALRRAFPPPAEPA 518


>gi|300114783|ref|YP_003761358.1| flagellar M-ring protein FliF [Nitrosococcus watsonii C-113]
 gi|299540720|gb|ADJ29037.1| flagellar M-ring protein FliF [Nitrosococcus watsonii C-113]
          Length = 567

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 138/565 (24%), Positives = 263/565 (46%), Gaps = 39/565 (6%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           +L     +   L   + + L   I   + L +    +  +P Y  +Y  +   +   I  
Sbjct: 24  RLAALQANIGRLSLQKQVGLLLAIAASVALVVGVVMWALAPTYQVMYGAVTGEEKGEIVA 83

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
           AL +ANI++R+++N  +I VP+S V + R+ LA +GLP  S+++G+EL ++   FG + F
Sbjct: 84  ALQKANIEYRLAENTGAIMVPASKVHEVRLQLAMEGLPR-SADTGFELLEQNPGFGASEF 142

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
           +++    RALEGE+ARTI +++ +  ARVH+ +P    F +    P+ASV++        
Sbjct: 143 LEKARYQRALEGELARTIGTLNNVRNARVHLALPKQSVFIRNRQAPSASVVLDLYAGRAL 202

Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEI 241
                 AI HLV++++PNL+   VT++D  G LLT  +  +++          + ++ + 
Sbjct: 203 DPGQVAAITHLVSSSIPNLESSGVTLVDQRGNLLTRQDRSQSLGMTEGQFEYTRRLEEKY 262

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE--- 298
              I   LA  +G D  R+ VVAE++    +  +  Y+P+S   RS ++S++ +      
Sbjct: 263 IRRIQHILAPMIGSDKARAQVVAEVDFTVTEQTQEYYNPESAALRSEQMSEEERTGSRFP 322

Query: 299 -------TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
                  ++QP +     + +P  +D + P+  ++  T  +    NYE++     +    
Sbjct: 323 QGIPGALSNQPPAEAQAPEVVPEANDDEAPI-EAVPTTRSQRATRNYELDRTISHSRLSP 381

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
             + RLS+AV+V++  + +  G  +   +    LA++  +V  A G N+ RGDTI + + 
Sbjct: 382 GSIRRLSVAVLVDEKAVADAEGTVSTVPRSPQELAQVTALVKEAVGFNAERGDTINVINA 441

Query: 412 DFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
            F+  N+  +     +   D   +    V      L   LL+  +   A RRL  +    
Sbjct: 442 PFVPANEEESFPEPSLWQQDWFWQ---AVKQGGGVLAILLLLLGVLRPAFRRLTAL---- 494

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS-RINSYVSKQSDL 529
                        P S  +      ++  + D   +D  S S N  + R+    S +++L
Sbjct: 495 -------------PESVTLPAIPNKDEEKSDDGLQEDQLSLSSNKPTLRLAGPHSLEANL 541

Query: 530 RL-LHMIEINEERFAKILRKWARSE 553
            +   M   +  R A++++ W  S+
Sbjct: 542 EIVRDMATGDSRRVAQVVKNWLVSD 566


>gi|78224304|ref|YP_386051.1| flagellar FliF M-ring protein [Geobacter metallireducens GS-15]
 gi|78195559|gb|ABB33326.1| Flagellar FliF M-ring protein [Geobacter metallireducens GS-15]
          Length = 527

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 123/564 (21%), Positives = 244/564 (43%), Gaps = 48/564 (8%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           + + L +  +   +L   +  I+  V+ V I+ F       N   Y  L+  L   D   
Sbjct: 1   MPEGLKKLLEPFMALPPAKRWIVGGVVGVSIIAFALLIMVANRTDYRPLFTNLTTEDAGE 60

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L E  + +RI+ +G +I VPS  V   R+ +A+ GLP      G+E+FD+ N FG+
Sbjct: 61  IVTKLKEQKVPYRIAADGKAILVPSDKVYDLRLTMASAGLPQGGG-VGFEIFDRKN-FGM 118

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T F+Q++   RAL+GE++RTI  I+G+  ARVH+ +P+   F++     TASV+++    
Sbjct: 119 TEFVQKLNYQRALQGELSRTIGQIAGVEQARVHLAIPEKALFKEDEKPATASVVLKVKGN 178

Query: 183 SVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAI 237
                   + + HLVA+++  ++   VTVLD  GKLL+ N   +    +      + +  
Sbjct: 179 RQLNDSDVQGVVHLVASSIEGMNPEHVTVLDQKGKLLSKNGPTDAAGKMTASMQEVQRTY 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           +   E  +   L   +G     + V A  +    +  E  YDP++ V RS + S+++   
Sbjct: 239 ERGTEERLQSLLDKAVGSGKSVARVSAVFDFRQVERYEEKYDPET-VVRSEQRSEESMGG 297

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
             +        + N+            +  N  K +E  NYE++  +  T      L ++
Sbjct: 298 ANAT-AGVPGAQTNL--GRTPAGAGGATGPNGSKNDETLNYEVSRSTARTIEPVGALSKV 354

Query: 358 SIAVVVNKGRLTEVLGRSA------DQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
           S+A++V+       +G+           +  + L +I  +V  A G N+ RGD +T+ ++
Sbjct: 355 SVAILVDGKYDAPAVGKDGKNAKPKYTPRSPAELQQIEALVKGAVGFNAVRGDQVTVANI 414

Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471
            F +     +      +    +  F +++   +   G L +    +  L ++   +    
Sbjct: 415 PFQDTAEAGTDEGSQWWN---APIFLSLLKNGLIGFGFLALLLFVVRPLMKMLKPEKKTS 471

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
            E                           + ++ + I   +   +++I +   +Q +  L
Sbjct: 472 FE--------------------------PISTAEETINQIAEVHRAQIQNQTIRQVE--L 503

Query: 532 LHMIEINEERFAKILRKWARSEIE 555
           ++ ++    + A+IL+ W R++ +
Sbjct: 504 MNKVKEEPYQAAQILQNWLRAKEQ 527


>gi|207728374|ref|YP_002256768.1| flagellar m-ring protein [Ralstonia solanacearum MolK2]
 gi|206591620|emb|CAQ57232.1| flagellar m-ring protein [Ralstonia solanacearum MolK2]
          Length = 614

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 133/559 (23%), Positives = 241/559 (43%), Gaps = 54/559 (9%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
             +  +P Y  LY  +  SD   I  AL + N+ +R +D  S+I VP + V + R+ LAA
Sbjct: 65  TLWSRAPDYRVLYSNVADSDGGAIIAALQQMNVPYRFADGDSAIMVPEANVHEVRLKLAA 124

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
           QGLP     +G+EL +    FG + F +++   RALEGE+ARTIQ++  + +ARVH+ + 
Sbjct: 125 QGLPKGGL-AGFELME-NQKFGTSQFAEQVNYQRALEGELARTIQAMQEVQSARVHLALS 182

Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
               F +  A+P+ASV+++     +      +AI HLV+++VPNL + +VTV+D +G+LL
Sbjct: 183 KPSVFVREQAKPSASVLLKLYPGRMLDRSQVQAIGHLVSSSVPNLPLANVTVVDQSGRLL 242

Query: 218 TAN--EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           +++  +    +    L+ V+ I+      I   L   +G DN R+ V A++++D  +   
Sbjct: 243 SSSFQDNASGLDPTQLNYVRDIEQGYIKRIEAILGPVVGDDNVRAQVTADVDLDNTEQMA 302

Query: 276 IVY----DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSD-------------- 317
             Y    DP + V RS   S+  Q    +Q         N P  +               
Sbjct: 303 ETYRPNQDPANGVVRSTHTSESTQNKAGAQ-GGVPGALSNQPPTAPRMLPTAPAPASQQA 361

Query: 318 ---RKVPLPRSLEN------------------TDKKEEQSNYEINTKSIATTHDNYKLER 356
              +     ++  N                  +  ++   NYE++     T      + R
Sbjct: 362 AAGQNGQNGQNAPNGQQQAAAAAGQAATNSVESSARDTTVNYEVDKTVRRTRAAVGTVRR 421

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           LS+AVVVN     +       +   D+ + ++N +V  A G +++RGD++ + +  F   
Sbjct: 422 LSVAVVVNYRADGK-----TWKPLSDADMVKLNALVKDAVGYDAKRGDSVNVVNSQFSGT 476

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD--AKKGEV 474
              +   + +     +  +           +G L++ F  +  L R  N  +  A    V
Sbjct: 477 LPMSRDDLPLWKQPEMIHYAIQAAKYGALAIGFLILVFAVIRPLIRSMNKKEELATATFV 536

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
           G +      PI +       P       +S  D  +    L     ++  +Q    +  +
Sbjct: 537 GREGDDPNAPIITGAAAPAGPELEGP-SASAADGNAVPEELPQLKQNHEFEQKLETMRRI 595

Query: 535 IEINEERFAKILRKWARSE 553
            + N    A ++++W   E
Sbjct: 596 AQQNPRAVAAVIKQWVSIE 614


>gi|167835057|ref|ZP_02461940.1| flagellar MS-ring protein [Burkholderia thailandensis MSMB43]
          Length = 486

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 118/442 (26%), Positives = 198/442 (44%), Gaps = 15/442 (3%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 46  WSRAPDYRVLYSNLSDRDGGAIITALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 105

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++SI+ + AARVH+ +P  
Sbjct: 106 LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 163

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++      V    +  A+  +V+++VP++   +VT++D  G LLT 
Sbjct: 164 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 223

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N R+ V A+++    +     Y 
Sbjct: 224 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARAQVSADVDFSKIEQTSESYG 283

Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH--------VSDRKVPLPRSLEN 328
           P+   ++S   S+    +     S          N P          S+ +   P +   
Sbjct: 284 PNGTPQQSAIRSQQTSTATELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 343

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           +D+K+  +NYE++            ++RLS+AVVVN     +  GR   Q      LA++
Sbjct: 344 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPAADAKGRVTMQPLAADKLAQV 403

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G + +RGD++ + +  F       +        D++           V    
Sbjct: 404 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 463

Query: 449 TLLVTFLGLHALRRLHNIDDAK 470
             L       ALRR        
Sbjct: 464 AALYFMFVRPALRRAFPPPAQP 485


>gi|269139487|ref|YP_003296188.1| flagellar biosynthesis/type III secretory pathway lipoprotein
           [Edwardsiella tarda EIB202]
 gi|267985148|gb|ACY84977.1| flagellar biosynthesis/type III secretory pathway lipoprotein
           [Edwardsiella tarda EIB202]
 gi|304559376|gb|ADM42040.1| Flagellar M-ring protein FliF [Edwardsiella tarda FL6-60]
          Length = 572

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 135/568 (23%), Positives = 242/568 (42%), Gaps = 65/568 (11%)

Query: 22  ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81
            + L     V I + +    +  +P Y  LY  +   D   I   L++ NI +R ++NG+
Sbjct: 32  KIPLLLASAVAIAIVVVLALWARAPDYRVLYSNISDRDGGAIVTQLTQMNIPYRFANNGA 91

Query: 82  SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
           ++ VP+  V   R+ LA QGLP   +  G+EL D+   FG++ F ++I   RALEGE+AR
Sbjct: 92  TLMVPADKVYDTRLKLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQINYQRALEGELAR 149

Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAV 199
           TI+++  +V+ARVH+ MP    F +   +P+ASV +              AI ++V+++V
Sbjct: 150 TIETLGPVVSARVHLAMPKPSLFVREQKQPSASVTLTLEPGRALDDGQINAIVYMVSSSV 209

Query: 200 PNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNF 258
             L  G+VTV+D  G LLT  +   R++    L     ++  ++  I   L   LG  N 
Sbjct: 210 AGLPPGNVTVVDQFGHLLTQPDGTGRDLNAAQLKFTSEVEGRLQRRIETILQPMLGSGNV 269

Query: 259 RSAVVAELNMDTQQIREIVYDPDSKVERSI--------------RLSKDAQRSETSQPES 304
            + V A+L+  +++  +  Y P+    ++               +L+     + +++P  
Sbjct: 270 HAQVTAQLDFASREQTDEEYKPNQLPNQAAIRSQQISQSDQSGGQLNGGVPGALSNEPAP 329

Query: 305 AVTVEQNMP----HVSDRKVPLPR------------SLENTDKKEEQSNYEINTKSIATT 348
             T   + P      + R  P P             S     +++E +NYE++     T 
Sbjct: 330 PATGNIDKPRSAQGTAGRNTPTPSRSSAISNNGRLTSRNENIRRDETTNYEVDRTIRHTQ 389

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
                +ERLS+AVVVN    T+      +       + +IN +V  A G +  RGDT+++
Sbjct: 390 ARAGNIERLSVAVVVNYATDTKGK----EIALSQEKMDQINNLVREAMGFSQSRGDTLSV 445

Query: 409 TSMDFL---ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465
            +  F    +N        + SF+D+L+           +L+  L+   L    ++ +  
Sbjct: 446 VNTPFNSVEDNGGELPFWQKQSFIDLLT-------TLGRYLLVALVAWLLWRKLVKPMLT 498

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
                      +    P  +  A                + +     R LQ R  +    
Sbjct: 499 KQQRAAAAAQQRVDAPPLSVQPA-------------KQPSNEELQQRRKLQQRSTAEAQT 545

Query: 526 QSDLRLLHMIEINEERFAKILRKWARSE 553
           +   R+  M E +    A ++R+W  +E
Sbjct: 546 E---RVREMAEQDPRVVALVIRQWMSTE 570


>gi|154252631|ref|YP_001413455.1| flagellar M-ring protein FliF [Parvibaculum lavamentivorans DS-1]
 gi|154156581|gb|ABS63798.1| flagellar M-ring protein FliF [Parvibaculum lavamentivorans DS-1]
          Length = 552

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 133/553 (24%), Positives = 241/553 (43%), Gaps = 22/553 (3%)

Query: 14  GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73
             SLG  R+  L  V +     F      + +     L+  + V D  ++   L  A + 
Sbjct: 8   LQSLGTMRLAALGLVAIALFSFFAFIALRMGNEPKALLFSDVGVEDAAKMIAELDAAKVS 67

Query: 74  FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
           + +  NG  I VP + V + R+ LA +GLP +    GYE+FD  ++ G TSF+Q I  +R
Sbjct: 68  YELRGNGGMIYVPQADVLRLRMMLAGKGLP-AGGTVGYEIFDNADALGTTSFLQNINHLR 126

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-INPSVYKSAEAIR 192
           ALEGE+ARTI++I GI  ARVH+V+P+   F +    PTAS++++   N    +  +AI+
Sbjct: 127 ALEGELARTIRAIEGIGGARVHLVLPERELFSRDRREPTASIVLKVSRNSLTTQQVKAIQ 186

Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAIQHEIEMNINKAL 249
           +LVA+AV  L  G V+++D  G LL +    + +  ++          ++ +  ++   L
Sbjct: 187 YLVASAVDGLSPGRVSIVDERGALLASGVGEDTQSLLVTSVDERRTGYENRLRTHLENIL 246

Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309
              +G D  R  V A+++ +        +DP+ +V RS +   D   S        VTV 
Sbjct: 247 QRVVGADKARVEVTAQMDYNRITQTSDTFDPNGQVVRSTQTVDDNSTSADGAQNDGVTVG 306

Query: 310 QNMPHVS-DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368
            N+P+ +         S + +++ EE  NYEI+  +     +  +++RLS+AV+V+    
Sbjct: 307 NNLPNANLGGAEAETGSRQASNRTEETVNYEISRTTKTEVLEPGRVKRLSVAVLVDGSYA 366

Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN----SGTV 424
            +  G +    + +  L +I  +V +A G ++ RGD + I ++ F      +        
Sbjct: 367 ADAEGNTVYTPRTEQELGKIEALVKSAIGFDTSRGDQVEIVNLQFAAAPDLDVGLSEEEE 426

Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG----GKSIL 480
              FMD        +    V  +  L+     L  +           G++         +
Sbjct: 427 AKGFMDFTRAEVMRMAEMAVLTILALVAMLFVLRPMLSRAFSGSTTTGQIAYTNNSAQAV 486

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
              P    V  G +P        +   +        +++   V + S  ++  ++  + +
Sbjct: 487 LESPDGLDVPAGALP--------APDQLSEDMMIDIAQVAGKVKQSSVRKIGELVTSHPD 538

Query: 541 RFAKILRKWARSE 553
               ILR W    
Sbjct: 539 ESISILRSWLHET 551


>gi|152980320|ref|YP_001353131.1| flagellar MS-ring protein [Janthinobacterium sp. Marseille]
 gi|151280397|gb|ABR88807.1| flagellar basal-body M-ring protein [Janthinobacterium sp.
           Marseille]
          Length = 585

 Score =  409 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 127/588 (21%), Positives = 230/588 (39%), Gaps = 66/588 (11%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
            +   F         R ++L       I + +A   +   P Y  L+      D   I  
Sbjct: 24  NMQNSFMDMAKSPNGRKVMLMLGSAAVIAIMIALVLWSQKPEYKVLFSNFSDRDGGAIMS 83

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
           +L  +N+ ++ ++ G +I VP+  V + R+ LAA+GLP      G+EL +     G++ F
Sbjct: 84  SLQASNVPYKFAEGGGAILVPADKVHEIRLKLAAEGLPKGGG-VGFELME-NQKLGVSQF 141

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
           ++++   RALEGE+AR+IQS+  + AARVH+ MP    F +   +PTASV++        
Sbjct: 142 LEQVNFQRALEGELARSIQSVGAVQAARVHLAMPKASVFVRDQQKPTASVLLNLRQGRAL 201

Query: 186 KSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA---NEMERNILGKSLSIVQAIQHE 240
              +  AI HLVA++VP L   +VT++D +G LL+          +    L  VQ +Q  
Sbjct: 202 DQQQVSAIVHLVASSVPELSPKNVTIVDQSGNLLSETNKPAGSNTLDPSQLKYVQELQQS 261

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV----ERSIRLSKDAQR 296
           I   I   +   +G  N R+   A+++  T +    +Y P+        RS++ S+    
Sbjct: 262 ITKRIESIITPIVGASNIRAEATADVDFSTSEQAAEIYKPNQVPNSATVRSLQTSESRGN 321

Query: 297 SE---------TSQPESAVTVEQNMPHVSDRKVPLPRSLENTD----------------- 330
                      T+QP    T     P ++    P   +                      
Sbjct: 322 GTGASGVPGALTNQPAPNATAPLTAPPLAADGTPSTATNPPAPGTPAAAAAAAAAATAAA 381

Query: 331 -----KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385
                +K+  +N+E++            L+RLS+AVVVN  R+    G+       ++  
Sbjct: 382 NATPTQKDTTTNFEVDKTVRYVQQPMGGLKRLSVAVVVNYKRVVAKDGKVTIAPLSETEK 441

Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445
            +I  +V  A G N  RGDT+ + +  F   +        +     +       I A  +
Sbjct: 442 NQITDLVKEAMGYNKDRGDTLNVVNSPFAGVEKDEIVQPPLWERPEI---IEMAIQAAKY 498

Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505
           L   +++  L    L+ + N    K      + +      + A+    +  D   +    
Sbjct: 499 LAIGIVLFLLYRKLLKPMLN----KLNPPPPEPLALEDESAEALEKMHLEEDGKPMG--- 551

Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                     Q  + +            +   + +  A I++ W  ++
Sbjct: 552 -----IQNTYQQNLEAA---------KELARKDPKVVANIVKSWVGND 585


>gi|251789188|ref|YP_003003909.1| flagellar MS-ring protein [Dickeya zeae Ech1591]
 gi|247537809|gb|ACT06430.1| flagellar M-ring protein FliF [Dickeya zeae Ech1591]
          Length = 568

 Score =  409 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 127/551 (23%), Positives = 227/551 (41%), Gaps = 61/551 (11%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
              +   P Y  LY  L   D   I   L + NI +R +++G++I +P+  V + R+ LA
Sbjct: 44  LSLWARGPDYRVLYTNLNERDGGSIVSELGKMNIPYRFTESGAAIMIPADKVYETRLKLA 103

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
            QGLP   +  G+EL D+   FG++ F ++I   RALEGE+ART++++  I  ARVH+ +
Sbjct: 104 QQGLPKGGA-VGFELLDQE-KFGISQFSEQINYQRALEGELARTMETLGPIQNARVHLAI 161

Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           P    F +    P+A+V +              AI +LV+++V  L    VTV+D TGKL
Sbjct: 162 PKPSLFVREQKSPSAAVTVTLQPGRALDDNQINAITYLVSSSVAGLPADKVTVVDQTGKL 221

Query: 217 LTANEM-ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LT N+   R++    L     I+   +  I   LA  +G  N  + V A+++   ++  +
Sbjct: 222 LTQNDGSGRDLNAAQLKYANEIEGNYQRRIEAILAPVVGAGNVHAQVTAQIDFANREQTD 281

Query: 276 IVYDPDSKV--------------ERSIRLSKDAQRSETSQPESAVTVEQNMPH------- 314
             Y P+                 +R          + ++ P  A T   + P        
Sbjct: 282 EQYQPNQSPNQSAVRSQQSSQSDQRGGSNVGGVPGALSNTPSPAPTAPISTPPANNANNT 341

Query: 315 -----------VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
                       +        +     + ++  NYE++     T      ++RLS+AVVV
Sbjct: 342 NNTNNTNTAGTNTQTSGNNAANQTYNSRHDQTINYEVDRTIRHTKQSTGNIQRLSVAVVV 401

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           N  +  +           D  L +I  +V  + G ++ RGD++ + +  F          
Sbjct: 402 NYTQGEDGK----PAALSDEQLKKIEALVRESMGFSTERGDSLNVVNTPFTITDTSGGEL 457

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
                        A     LV +VG +L   L    L+R   I +A              
Sbjct: 458 PFWQKQVFFDLLTAAGRWLLVLIVGWILYRKLVRPQLQRRVQIQEAA------------- 504

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
             ++A   G  P+ ++ + S  +++    +  + R ++ +  Q   R+  + E +    A
Sbjct: 505 -AAAAALRGQDPDVSVTISSMEEEL---QKKSEQRAHTEMHSQ---RIRELAENDPRVVA 557

Query: 544 KILRKWARSEI 554
            ++R W  +E+
Sbjct: 558 LVIRHWMSNEL 568


>gi|300696960|ref|YP_003747621.1| FliF: flagellar biosynthesis protein, M-ring protein, Belongs to
           the fliF family [Ralstonia solanacearum CFBP2957]
 gi|299073684|emb|CBJ53204.1| FliF: Flagellar biosynthesis protein, M-ring protein, Belongs to
           the fliF family [Ralstonia solanacearum CFBP2957]
          Length = 616

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 133/561 (23%), Positives = 242/561 (43%), Gaps = 56/561 (9%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
             +  +P Y  LY  +  SD   I  AL + N+ +R +D GS+I VP + V +AR+ LAA
Sbjct: 65  TLWSRAPDYRVLYSNVADSDGGAIIAALQQMNVPYRFADGGSAIMVPEANVHEARLKLAA 124

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
           QGLP     +G+EL +    FG + F +++   RALEGE+ARTIQ++  + +ARVH+ + 
Sbjct: 125 QGLPKGGL-AGFELME-NQKFGTSQFAEQVNYQRALEGELARTIQAMQEVQSARVHLALS 182

Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
               F +   +P+ASV+++     +      +AI HL++++VPNL + +VTV+D +G+LL
Sbjct: 183 KPSVFVREQVKPSASVLLKLYPGRMLDRSQVQAIGHLLSSSVPNLPLANVTVVDQSGRLL 242

Query: 218 TAN--EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           +++  +    +    L+ V+ I+      I   L   +G DN R+ V A++++D  +   
Sbjct: 243 SSSFQDNASGLDPTQLNYVRDIEQGYIKRIEAILGPVVGEDNVRAQVTADVDLDNTEQMA 302

Query: 276 IVY----DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVP---------- 321
             Y    DP + V RS   S+   +S+            N P  + R +P          
Sbjct: 303 ETYRPNQDPANGVVRSTHTSEST-QSKAGAQGGVPGALSNQPPTAPRMLPTAPAPASQQA 361

Query: 322 ---------------------------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
                                         +   +  ++   NYE++     T      +
Sbjct: 362 AAGQNGQNGQNGPNAQNGQQQGAATGQAATNNVESSARDTTVNYEVDKTVRRTRAAVGTV 421

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
            RLS+AVVVN     +       +   D+ + ++N +V  A G +++RGD++ + +  F 
Sbjct: 422 RRLSVAVVVNYRADGK-----TWKPLSDADMVKLNALVKDAVGYDAKRGDSVNVVNSQFS 476

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD--AKKG 472
                +   + +     +  +           +G L++ F  +  L R  N  +  A   
Sbjct: 477 GTLPTSKDDLPLWKQPEMIHYAIQAAKYGALAIGFLILVFAVIRPLIRSMNKKEELATAT 536

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
            VG +      PI +       P       +S  D  +    L     ++  +Q    + 
Sbjct: 537 FVGREGDDPNAPIITGAAAPAGPELEGP-SASAADGNAVPEELPQLKQNHEFEQKLETMR 595

Query: 533 HMIEINEERFAKILRKWARSE 553
            + + N    A ++++W   E
Sbjct: 596 RIAQQNPRAVAAVIKQWVSIE 616


>gi|190574239|ref|YP_001972084.1| flagellar MS-ring protein [Stenotrophomonas maltophilia K279a]
 gi|190012161|emb|CAQ45784.1| putative flagellar M-ring protein [Stenotrophomonas maltophilia
           K279a]
          Length = 548

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 121/553 (21%), Positives = 232/553 (41%), Gaps = 21/553 (3%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++  Q+F    SL  TR L L ++I V +   ++  F+   P    LY  L+       +
Sbjct: 13  EKAGQWFDRLQSLQITRRLGLMAMIAVAVAAGLSVFFWSQKPGMVPLYTGLDQKATAEAT 72

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L  A I F +      I+VP   +  AR+ LA  GL + S   G+EL ++   FG++ 
Sbjct: 73  DLLRAAQIPFALDPATGGITVPEKNLHDARLKLAGSGL-TDSGKLGFELMERDPGFGVSQ 131

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           F++      ALE E++RTI ++  +  +RVH+ +P   +F +     +ASV +       
Sbjct: 132 FVESARYQHALETELSRTINTLRPVRDSRVHLAIPKPSAFTRQRDVASASVTLELRGGQQ 191

Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHE 240
            +    +AI H+VAA++P+L    VTV+D +G++L+      E  +       V+  +  
Sbjct: 192 LERSQVDAIVHMVAASIPDLAPERVTVVDQSGRMLSITDPNSEAAVNAAQFEQVRRQETS 251

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I + L    G       V  +++    +    +Y+ + +  RS ++S++   + T 
Sbjct: 252 FNQRIRELLEPMTGPGRVNPEVSVDMDFSVTEEARELYNGEPQKLRSEQMSENT--TSTP 309

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
            P+       N P    +  P          K    NYE++     T     +++R+S+A
Sbjct: 310 GPQGVPGATSNSPPGQ-QAAPATAQTPTESSKNATRNYELDRTLQHTRQPAGRIKRVSVA 368

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           V+V+        G+ + Q    + L  +  +V  A G N+ RGDT+++ +  F+ +    
Sbjct: 369 VLVDNVPRAGANGKMSPQPLSAAELTRVEALVKQAVGFNAERGDTVSVMNAPFVRDTTPV 428

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
            G                V +A   L+G ++V  L    LR        +  +    ++ 
Sbjct: 429 EGPA--------WWELPWVHDAGRMLLGAVVVLALLFGVLRPALRAITGQNKKNDEPALE 480

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
                   V    MP   +  D ++    +    L   ++SY  +    R    ++ + +
Sbjct: 481 PHTADVQLVDDDGMPLPALGADRAS---LAGPDALALPVDSYEERLRMAR--EAVKTDSK 535

Query: 541 RFAKILRKWARSE 553
           R A++++ W  ++
Sbjct: 536 RVAQVVKGWVAND 548


>gi|83309602|ref|YP_419866.1| flagellar MS-ring protein [Magnetospirillum magneticum AMB-1]
 gi|82944443|dbj|BAE49307.1| Flagellar biosynthesis/type III secretory pathway lipoprotein
           [Magnetospirillum magneticum AMB-1]
          Length = 574

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 146/556 (26%), Positives = 263/556 (47%), Gaps = 9/556 (1%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           D +  F +    LG  R+  +A V +  +  F+     V +P  + LY  L++ D  +I 
Sbjct: 20  DDVNAFLQMLRGLGPMRLAAIAGVGVSILGFFIYLMSRVAAPQMELLYGDLDLGDSKQII 79

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L+   I + +  +G+ + VP       R+ +A Q LP+    +GYELFDK ++ G TS
Sbjct: 80  EKLTADKIPYELRKDGTEVWVPKDRKLDLRVRMAEQALPAGGRMAGYELFDKQDALGSTS 139

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           F Q IT VRALEGE+++TI+SI  + AARVH+V+P   +F +    P+ASV+I+      
Sbjct: 140 FQQNITMVRALEGELSKTIRSIDRVKAARVHLVLPKREAFSRDTQEPSASVIIKMNGAQR 199

Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL--SIVQAIQHE 240
                  AI+HL+AAAVP +    ++++D  G LL                 +    + +
Sbjct: 200 LDKGQVSAIQHLIAAAVPKMKPSRISIVDDKGTLLAKGFENSKEYQAQTAEEMKVKTEAK 259

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           +   I   L   LG    R+ V  +++M      E  +DP++KV RS     + ++S+ +
Sbjct: 260 LVKTIEDLLERSLGPGRVRAEVTVDMDMSQATTTEETFDPETKVVRSQVTVNEGEQSQDA 319

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           +P + VTV+QN+P  +       R+    +K +E  NYEI+ K+ +T  +  ++ ++S A
Sbjct: 320 EP-TPVTVQQNLPDPNASSSGNIRTSTKINKNQETVNYEISRKTKSTVREMGEIRKVSAA 378

Query: 361 VVVNKGRLTEVLGR-SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           V+V+  R     G+ ++ + +    L++I  +V +A G    R D + + SM F + +  
Sbjct: 379 VIVDGVREQSADGKQTSYRERTAEELSQIEALVKSAIGYTKDRDDQVKVASMPFYKGEEL 438

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG--GK 477
                   F+  + R F   I +    +  + + FL L     +    ++ +G+VG  G+
Sbjct: 439 LQAEEPGEFIFGMRRDFVEKIAS-NLGLSVVAILFLLLVLRPLISRAIESMQGQVGPDGR 497

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
            +L+    +    TG       A     +++ +       ++   V   S  ++  ++E 
Sbjct: 498 RLLTTDGGAMPQLTGPGAAAMPAPLGGEEEVIADELIDIDKVEGRVKASSIRKIGEIVEK 557

Query: 538 NEERFAKILRKWARSE 553
           + E    I+R W   E
Sbjct: 558 HPEEALSIIRNWLYQE 573


>gi|307822872|ref|ZP_07653103.1| flagellar M-ring protein FliF [Methylobacter tundripaludum SV96]
 gi|307736476|gb|EFO07322.1| flagellar M-ring protein FliF [Methylobacter tundripaludum SV96]
          Length = 611

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 137/572 (23%), Positives = 245/572 (42%), Gaps = 36/572 (6%)

Query: 12  KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71
           K    L   R + L   + + + + +A   +   P Y  LY ++  SDV+ I   L++ N
Sbjct: 45  KGLAGLTIARQIGLMLGLALSVAIGVAIVLWSQEPSYGRLYSEIGESDVSEILEILNKEN 104

Query: 72  IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131
           I +++     +I VP   V   ++ LAAQGLP S+S  GYEL DK   FG +  ++ +  
Sbjct: 105 IKYKVETGSGAIMVPMDQVSAVKLKLAAQGLPKSNS-LGYELLDKEQGFGASKGVETVRF 163

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAE 189
            RALEGEIARTI SI  +  ARV + +P    F +   +P+ASV++             E
Sbjct: 164 QRALEGEIARTIMSIQNVKTARVLLAIPAQSVFVRERKKPSASVIVNLYQGRSLDKGQVE 223

Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNINK 247
           +I HLVA++VP L+   VTV+D  G+LL +N+     N+  K     + I+  +   I  
Sbjct: 224 SIIHLVASSVPQLEAEQVTVVDQKGQLLNSNDSSVAGNLTSKQFEYKKNIEEHLMGRIEN 283

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVT 307
            L+  +G D  R  + A+++       + +++PD    RS + S++  +S  S  +    
Sbjct: 284 ILSPLVGSDGMRVQISADVDFTETDRTQEMFNPDLPALRSEQTSEE--QSTQSAIQGVPG 341

Query: 308 VEQNMPHVSDRKVPLPRSLE-------------------NTDKKEEQSNYEINTKSIATT 348
              N P  +        +                      +  K    NYE++     T 
Sbjct: 342 ALSNQPTPAGAAPDPAAAPAAPGSSATTAAAAPTSTATPGSAAKNATRNYELDKTITHTR 401

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
                L RLS+AVVV+   + +  G    Q      +   + +V  A G +S RGD +T+
Sbjct: 402 LATGALRRLSVAVVVDDRHVPQSDGTVKGQSYSQEDINRFSDLVKQAVGFDSSRGDQVTV 461

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNID 467
           T++ F  ++L  +      +       F  ++  +  ++  L + F  L   +R L   D
Sbjct: 462 TNVTFKIDELIEALPAIPVWEQG---WFLDLMKQVAAVLAVLFLLFGVLRPTMRSLVGRD 518

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRN---LQSRINSYVS 524
             +K  +                        +A+ +  Q++     N   +Q  +   V 
Sbjct: 519 IEEKKALALAEAQEKAIAIGGSVRFNDQGAPVAVPAGQQNVSFAKPNEMEMQDLLLLDVP 578

Query: 525 KQSDLRLL---HMIEINEERFAKILRKWARSE 553
           +  + RL     +++ + +  A++++ W + +
Sbjct: 579 QSYEHRLEYVKRLVDDDSKVVAQVIKSWIKKD 610


>gi|238920311|ref|YP_002933826.1| flagellar MS-ring protein [Edwardsiella ictaluri 93-146]
 gi|238869880|gb|ACR69591.1| flagellar M-ring protein FliF, putative [Edwardsiella ictaluri
           93-146]
          Length = 569

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 131/562 (23%), Positives = 232/562 (41%), Gaps = 56/562 (9%)

Query: 22  ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81
            + L     V I + +    +  +P Y  LY  +   D   I   L++ NI +R ++NG+
Sbjct: 32  KIPLLLASAVAIAIVVVLALWARAPDYRVLYSNISDRDGGAIVTQLTQMNIPYRFANNGT 91

Query: 82  SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
           ++ VP+S V   R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE+AR
Sbjct: 92  TLMVPASDVYATRLKLAQQGLPRGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELAR 149

Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAV 199
           TI+++  +V+ARV +  P    F +   +P+ASV +      V       AI ++V+++V
Sbjct: 150 TIETLGPVVSARVLLAEPKPSLFVREQKQPSASVTLTLEPGRVLDDGQINAIVYMVSSSV 209

Query: 200 PNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNF 258
             L  G+VTV+D  G LL+  +   R++    L     ++  ++  I   L   LG  N 
Sbjct: 210 AGLPPGNVTVVDQYGHLLSQPDGTGRDLNAAQLKFTAEVESRLQRRIETILQPMLGNGNV 269

Query: 259 RSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS---QPESAVTVEQNMPHV 315
            + V A+L+  +++  +  Y P+    ++   SK   +S+ S   Q         N P  
Sbjct: 270 HAQVTAQLDFASREQTDEEYTPNQPPNQAAVRSKQINQSDQSGGLQSGGVPGALSNEPAP 329

Query: 316 SDR------------------------KVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           +                                S     +++E  NYE++     T    
Sbjct: 330 APTGHINGKPRSAQGGNGAANRSNAVSNNGRQSSRSENFRRDETINYEVDRTIRHTKARA 389

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
             +ERLS+AVVVN    T+      +       + +IN +V  A G +  RGDT+++ + 
Sbjct: 390 GTIERLSVAVVVNYASDTKGK----EVALSQQKMDQINNLVREAMGFSQSRGDTLSVVNT 445

Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471
            F   +  N G +             T+     +L+  L+   L    ++ L        
Sbjct: 446 PFNSVE-DNGGELPFWQKQAFIDLLTTL---GRYLLVALVAWLLWRKLVKPLLTKQQQAA 501

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
                ++   P     +                + +     R LQ R  +    +   R+
Sbjct: 502 AAAQQRADTPPLSAQPS-------------KQLSNEELQQRRKLQQRSTAEAQTE---RV 545

Query: 532 LHMIEINEERFAKILRKWARSE 553
             M E +    A ++R+W  +E
Sbjct: 546 REMAEQDPRVVALVIRQWMSTE 567


>gi|254294565|ref|YP_003060588.1| flagellar M-ring protein FliF [Hirschia baltica ATCC 49814]
 gi|254043096|gb|ACT59891.1| flagellar M-ring protein FliF [Hirschia baltica ATCC 49814]
          Length = 568

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 146/564 (25%), Positives = 267/564 (47%), Gaps = 15/564 (2%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           + + +   K  T+ G+ RI+  A +++  +   +             LY  L++++   I
Sbjct: 1   MAETVSIIKKITNGGQMRIIA-ALMVVALVGAGLGFIMLRGGADEALLYSGLDLTESAEI 59

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           S  L +ANI + I  +G+SI V    V  AR+ L+ +GLP+  +  GYE+FDK  + G T
Sbjct: 60  SGRLDQANISYTIRGDGASIFVNRDQVLDARMMLSEEGLPTRGA-MGYEIFDKSEALGTT 118

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-RAINP 182
           SF+Q I RVRALEGE+ARTI S+  I  +RVH+V+P+   F +    P+ASV+I  A   
Sbjct: 119 SFVQNINRVRALEGELARTISSLDNIRGSRVHLVLPERRLFERGTQTPSASVVISVAGRG 178

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQH 239
            +     AIR+L+A +VPNL++  +T+LD  G+LL A           G +      I+ 
Sbjct: 179 MLPSQVRAIRNLIAGSVPNLEVNRITLLDDKGRLLAAGAENSENGFSGGSADERQTGIED 238

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           +I   +   + +  G    R  V A+++ +       ++DP+ +V RS   ++D+ R  +
Sbjct: 239 QIRNKVLSVVESVTGPGAARVQVAADIDFNRITQSSEIFDPEGRVIRSSTTTEDSSRESS 298

Query: 300 SQPESAVTVEQNMPHVSDRKVPL-PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
           ++P  AVT E N+P  +    P  P S   T+  +E +NYEI+  +     +  ++ ++S
Sbjct: 299 TEPAGAVTAENNIPAGTAADGPADPTSQAETNHLQETTNYEISKTTKTEITEGGRIRKIS 358

Query: 359 IAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           +AV ++  R+       +    +    +A I  +V +A G +  RGD + + ++ F+  +
Sbjct: 359 VAVALDDVRVPGADETEATFAPRTPEEIANIKTLVRSAVGYDEARGDIVEVVNVSFMRPE 418

Query: 418 LFNSGTVQVSFMDILSRH-FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476
              +  ++   M  L+++    +       VG +L+    L  L +      A+ G+   
Sbjct: 419 SSVNLAIEDPGMLGLTKNDIMRISELAALFVGAVLLIIFVLRPLVKGLMSPSAESGDSFY 478

Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ------SRINSYVSKQSDLR 530
                 P  S      +  ++N+ L  S                  +RI+  V+  S  +
Sbjct: 479 VGEAKLPGGSGNAAQKVTLSENLVLPGSGDGGNGQITEDDQFGLDVARISGKVNASSVKK 538

Query: 531 LLHMIEINEERFAKILRKWARSEI 554
           +  ++E + +   +I+R W   + 
Sbjct: 539 ISEVVESHPDESIQIIRAWLSEDH 562


>gi|146307847|ref|YP_001188312.1| flagellar MS-ring protein [Pseudomonas mendocina ymp]
 gi|145576048|gb|ABP85580.1| flagellar M-ring protein FliF [Pseudomonas mendocina ymp]
          Length = 594

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 124/591 (20%), Positives = 242/591 (40%), Gaps = 65/591 (10%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++   +   R L L   +   + +  A   +   P Y  LY  L   D  ++   L
Sbjct: 25  LSFLENLAEMSVLRQLGLLVGLAASVAIGFAVVLWSQQPDYRPLYGSLNGLDATQVVETL 84

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + A I++ +  N  ++ V +  + +AR+ LAA G+  + ++ G+E+ D+    G + FM+
Sbjct: 85  NAAGINYTVEPNSGALLVKADDLSRARLRLAAAGVAPTDNSVGFEILDREQGLGTSQFME 144

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
                R LEGE+ART+ S++ + AARVH+ MP    F +   +P+ASV++        + 
Sbjct: 145 ATRYRRGLEGELARTVSSLNNVKAARVHLAMPKASVFVRDERKPSASVLVELYPGRALEP 204

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP LD G VTV+D  G LL+  +   E  + GK     + ++     
Sbjct: 205 SQVMAIVNLVATSVPELDKGQVTVVDQKGNLLSDQQELSELTMAGKQFDYTRRMETLFTQ 264

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            ++  L   LG   +++ V A+++  + +    +++PD    RS +   + ++S +  P+
Sbjct: 265 RVHNILQPVLGTGRYKAEVSADVDFSSVESTSEMFNPDQPALRSEQQVNEQRQS-SLPPQ 323

Query: 304 SAVTVEQNM--------------------------------PHVSDRKVPLP--RSLENT 329
                  N                                   ++D     P        
Sbjct: 324 GVPGALSNQPPGAAAAPEQAGGAAGAAGPVAPGQPLVDANGQQITDPITGQPMLAPYPAD 383

Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLS-IAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
            +++   N+E++     T     +L RLS   VV ++ R+    G +         LA  
Sbjct: 384 KREQSTRNFELDRSISYTKQQQGRLRRLSVAVVVDDQVRVDPATGEANRVPWSADDLARF 443

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALV 444
            ++V  + G ++ RGD++++ +  F  +       +    Q  F DI+ +          
Sbjct: 444 TRLVQDSVGFDASRGDSVSVINTAFTASLGEEIPDIPFYTQPWFWDIVKQ---------- 493

Query: 445 FLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSS 504
            ++G L +  L    LR + N         G            A   G +  D ++L   
Sbjct: 494 -VLGVLFILVLVFGVLRPVLNNITGGGKGKGLAETGDVELGEMAGLDGELSEDRVSLGGP 552

Query: 505 NQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
              +  S S    +++N+         +  ++  +  R A+++++W  ++ 
Sbjct: 553 QSILLPSPSEGYDAQLNA---------IKSLVAEDPGRVAQVVKEWINADE 594


>gi|91978309|ref|YP_570968.1| flagellar MS-ring protein [Rhodopseudomonas palustris BisB5]
 gi|91684765|gb|ABE41067.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris BisB5]
          Length = 532

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 148/551 (26%), Positives = 245/551 (44%), Gaps = 23/551 (4%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +  LL F K    LG  R++ + +V +  +  F      V+ P    LY  L V D + I
Sbjct: 1   MQSLLGFLKG---LGAARVMAMIAVTVALLGFFAFVIMRVSQPQMTTLYTDLSVEDSSSI 57

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    I F + + G+++ VP   V + R+ LA           GYE+FDK ++ G T
Sbjct: 58  IKELERQAIPFEMRNEGTTLMVPKDKVTRLRMKLAEG-GLPKGGGVGYEIFDKSDALGTT 116

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
           SF+Q I  +RALEGE+ARTI++I  I  ARVH+V+P+   F +    P+AS+++R     
Sbjct: 117 SFVQNINHLRALEGELARTIRAIDRIQQARVHLVLPERPLFSRETPEPSASIVLRVRGAL 176

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQA--IQHEI 241
             +   AIRHLVA+AV  L    V+++D  G+LL       N    +    +    +  +
Sbjct: 177 EPQQVRAIRHLVASAVNGLKPQRVSIVDEGGQLLADGSASANAADGAAGDERRTSFEKRM 236

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
              I   +++ +G    R  V A+ + +        +DP+ +V RS +  ++  +S+TS 
Sbjct: 237 RNEIEGIVSSVVGSGRARVQVTADFDYNKITQTSDKFDPEGRVLRSSQTREE--QSQTSA 294

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
            +  VTV   +P    +    PR  + + K EE +NYEI+  +     +  ++ RLS+AV
Sbjct: 295 ADGQVTVNNELPGNQGQAGTGPR--DQSKKSEETNNYEISRITKTEVTEAGRVNRLSVAV 352

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           +V+        G      +    L  I  +V +A G + +RGD I + ++ F E      
Sbjct: 353 LVDGIYTKNEKGELVYAERPKEQLDRIAALVRSAIGFDQKRGDQIEVVNLKFAEAPQVEK 412

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
              Q   + +       ++N +   V  +L   +    +R L     A      G     
Sbjct: 413 LPEQAGLLGMFQFTKDDIMNMIQLGVMLVLGLVVLFMVIRPLVKRVLASDPGPEG----- 467

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
             P   A+T G +P   I  D   Q     S    +++   V  QS  R+  + + N   
Sbjct: 468 --PGLPALTDGSVPQ--IGADGQPQ----PSMIDIAQVQGQVHAQSVHRVGELADRNPNE 519

Query: 542 FAKILRKWARS 552
            A I+R+W   
Sbjct: 520 TAAIVRQWLAE 530


>gi|300311375|ref|YP_003775467.1| hypothetical protein Hsero_2059 [Herbaspirillum seropedicae SmR1]
 gi|300074160|gb|ADJ63559.1| hypothetical protein Hsero_2059 [Herbaspirillum seropedicae SmR1]
          Length = 569

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 132/548 (24%), Positives = 237/548 (43%), Gaps = 48/548 (8%)

Query: 38  AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97
               +     Y  L+      D   I  +L + N+ ++ SD G++I VP +MV  AR+ L
Sbjct: 38  GIWLWSQKVEYRVLFSNFNDRDGGAIVASLQQMNVPYKYSDGGTAILVPENMVHDARLKL 97

Query: 98  AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
           AAQGLP    N G+EL +     G++ F++++   RALEGE+AR++ S++ +  ARVH+ 
Sbjct: 98  AAQGLPKGG-NVGFELME-NQKLGISQFLEQVNFQRALEGELARSVGSLASVQTARVHLA 155

Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
           +P    F +   +PTASV++          +   AI HLVA++VP L    VT++D  G 
Sbjct: 156 LPKASVFVRDQQKPTASVVLSLYPGRYLDPQQVSAIVHLVASSVPELSPKAVTIVDQNGN 215

Query: 216 LLTANEME---RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272
           LL+    +     +    L  VQ +Q +I   +   +A  +G  N R+   A+++    +
Sbjct: 216 LLSDTTKQAQPNTLDPTQLKYVQDMQQDIVKRVESIIAPIVGNGNVRAEATADVDFSRSE 275

Query: 273 IREIVYDP----DSKVERSIRLSKDAQRSE---------TSQPESAVTVEQNMPHVSDRK 319
                Y P    DS   RS + S+    S          ++QP +  T     P V++  
Sbjct: 276 QASEAYKPNQTKDSAAVRSKQSSEANSASNGTSGVPGALSNQPPAPATAPIVNPAVANGA 335

Query: 320 VPLPR-----------SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368
                           +     +K+E  NYE++     T      + RL++AVVVN  R 
Sbjct: 336 ANQTGAATPNGALPTPTATGNSRKDETINYEVDKTVRYTQQPMGGVRRLTVAVVVNYKRT 395

Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSF 428
            +  G+   +   ++   +I  +V  A G N  RGD++ + +  F  +        +   
Sbjct: 396 MDNTGKIVMRPLTEAERNQITDLVKEAMGYNKDRGDSLNVVNTQFSTDMEPEVPLWKQPG 455

Query: 429 MDILSRHFATVINALVFLVGTLLVTFLGLHALRRL---HNIDDAKKGEVGGKSILSPPPI 485
           M  L++          +++   ++ FL    LR +    +  + ++     K+       
Sbjct: 456 MIDLAKEIG------KYVLVAAVLLFLYFRVLRPIVWKLSGREERERLAKEKAEAEAAAA 509

Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545
           ++AV  G  P+D  A+ + + +        Q + N   +KQ         + + +  A I
Sbjct: 510 AAAVAAGFDPDDPDAIVNLSGE-SEVDERAQYKANLETAKQW-------AKNDPKLVASI 561

Query: 546 LRKWARSE 553
           ++ W  +E
Sbjct: 562 IKSWVNNE 569


>gi|325981191|ref|YP_004293593.1| flagellar M-ring protein FliF [Nitrosomonas sp. AL212]
 gi|325530710|gb|ADZ25431.1| flagellar M-ring protein FliF [Nitrosomonas sp. AL212]
          Length = 571

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 134/571 (23%), Positives = 228/571 (39%), Gaps = 49/571 (8%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
              +  +SL   + L L +     I L + A  +  +P Y  LY  L   D   I  AL 
Sbjct: 17  NRLEHLSSLSNQKKLGLITSAAAVIALLVGALMWSQAPEYRALYNNLSDHDGAAIISALQ 76

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
           + N+ +  S++G +I +P   V + R+ LA QGLP      G+EL +    FG + F+++
Sbjct: 77  QMNVPYTFSESGGTILIPEKQVHEVRLKLAGQGLPKGGL-VGFELME-NQKFGSSQFLEQ 134

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--K 186
           +   RALEGE+AR++QS+S + +ARVH+ +     F +   +P+ SV++      V   +
Sbjct: 135 VNYQRALEGELARSVQSLSAVQSARVHLAIAKPSVFSREKQQPSVSVLLNLYPGRVLSIE 194

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKSLSIVQAIQHEIEM 243
              AI HL+A++VPNL + +VTV+D  G LL++      +     K L+ +Q ++     
Sbjct: 195 QVSAIVHLMASSVPNLPVKNVTVVDQNGNLLSSQNDKKEDSRFDAKQLAYIQELEENYIR 254

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS-KVERSIRLSKDAQRSE---- 298
            I   L    G  N R+ V A+++    +  E  Y P++ + +R+   S+    S     
Sbjct: 255 RIETILTPITGATNVRAQVTADVDFSRIERAEETYRPNNTEADRASIRSQQTHESMSIGS 314

Query: 299 ----------TSQPESAVTVEQNMPHVSDRKVPLPRSLENTD---------KKEEQSNYE 339
                     T++P                        E TD         KKE   NYE
Sbjct: 315 KFDGGIPGALTNRPPEPAIAPIEAGGKKPAGDKAEGDEEETDSTPPLPTDKKKESTINYE 374

Query: 340 INTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN 399
           ++     T      ++RLS AVVVN  +  +  G    +      + EIN +V  A G N
Sbjct: 375 VDKTVQHTQQSTGNIKRLSAAVVVNYRKKVDESGAITYEPLSAEEIKEINNLVREAMGYN 434

Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA 459
            RRGD++T+T+  F   +      V       +          L+ +   L      L  
Sbjct: 435 ERRGDSLTVTNGLFT-GETETVLEVPFWKDPDVIMLAKDFAKQLLIIGVVLFFLLKILRP 493

Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519
              L ++           +        +A+       D  A+ +  + +F          
Sbjct: 494 F--LKSLAPPPPLPALTDNTTQVAADGTALEQLPGQTDGTAMQAIQKSMFDE-------- 543

Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
                  +  R   +        A +++ W 
Sbjct: 544 -------NLKRAKQLAMDEPAIVANVVKDWI 567


>gi|293395603|ref|ZP_06639886.1| flagellar M-ring protein [Serratia odorifera DSM 4582]
 gi|291421922|gb|EFE95168.1| flagellar M-ring protein [Serratia odorifera DSM 4582]
          Length = 573

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 129/555 (23%), Positives = 238/555 (42%), Gaps = 64/555 (11%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
              +  SP Y  LY  L   D   I   L++ NI +R ++NG+++ +P+  V + R+ LA
Sbjct: 44  LLLWAKSPDYRVLYSNLNDRDGGAIVTQLTQMNIPYRFAENGAALMIPAEKVHETRLRLA 103

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
            QGLP   +  G+EL D+   FG++ F ++I   RALEGE++RTI+S+  +  ARVH+ +
Sbjct: 104 QQGLPKGGA-VGFELLDQE-KFGISQFSEQINYQRALEGELSRTIESLGPVQNARVHLAL 161

Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           P    F +    P+ASV +              AI ++VA++V  L  G+VTV+D  G+L
Sbjct: 162 PKPSLFVREQKSPSASVTLNLQPGRALDDGQINAIVYMVASSVAGLPPGNVTVVDQAGRL 221

Query: 217 LTANEM-ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LT ++   R++    L     +++  +  I   LA  +G  N R+ V A+++   ++  +
Sbjct: 222 LTQSDGSGRDLNASQLKYTSEVENRYQRRIEAILAPIVGSANVRAQVTAQIDFSIREQTD 281

Query: 276 IVYDPDSKVERSIRLSKDAQRSE--------------TSQPESAVTVEQNMPHV------ 315
             Y P+   E++   S+   +S+              ++QP +A T     P        
Sbjct: 282 EQYQPNPTPEKAAIRSRQLSQSDQLGGQPVGGVPGALSNQPSAAPTAPIETPAADATANT 341

Query: 316 ----------------SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
                           +              +++E +NYE++     T H +  ++RLS+
Sbjct: 342 NTTANNAPPAARQTSNTATGNGNGNGQPQNSRRDETTNYEVDRTIRHTQHKSGAVQRLSV 401

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AVV+N    ++  G+          L +I  +V  A G +  RGDT+ + +  F E ++ 
Sbjct: 402 AVVLN-TLGSDKDGKPL--PMSKQQLTQIESLVREAMGYSGTRGDTLNVVNSPFTETEM- 457

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
                ++ F    S    +++NA  +L+  L+   L    +                   
Sbjct: 458 --TAGELPFWQTQS-FIDSLLNAGRYLLILLVAWLLWRKLV-------------RPQLQQ 501

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
                 ++                 + D     +  Q R+++ V  Q   R+  + + + 
Sbjct: 502 RQAQQQAAIAAASAPAARPADAGKPSNDELVQHKRSQQRVSAEVQSQ---RIRDLADKDP 558

Query: 540 ERFAKILRKWARSEI 554
              A ++R+W  +EI
Sbjct: 559 RVVALVIRQWMSNEI 573


>gi|270262379|ref|ZP_06190651.1| flagellar M-ring protein FliF [Serratia odorifera 4Rx13]
 gi|270044255|gb|EFA17347.1| flagellar M-ring protein FliF [Serratia odorifera 4Rx13]
          Length = 567

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 132/549 (24%), Positives = 244/549 (44%), Gaps = 58/549 (10%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
              +  SP Y  LY  L   D   I   L++ NI +R ++NG+++ +P+  V + R+ LA
Sbjct: 44  LLLWAKSPDYRVLYSNLNDRDGGAIVTQLTQMNIPYRFAENGAALMIPADKVHETRLRLA 103

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
            QGLP   +  G+EL D+   FG++ F ++I   RALEGE++RTI+S+  +  ARVH+ +
Sbjct: 104 QQGLPKGGA-VGFELLDQE-KFGISQFSEQINYQRALEGELSRTIESLGPVQNARVHLAL 161

Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           P    F +    P+ASV +              AI ++V+++V  L  G+VTV+D  G+L
Sbjct: 162 PKPSLFVREQKSPSASVTLTLQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQAGRL 221

Query: 217 LTANEM-ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LT ++   R++    L     +++  +  I   LA  +G  N  + V A+++  T++  +
Sbjct: 222 LTQSDGAGRDLNAAQLKYANEVENRYQRRIEAILAPMVGNANVHAQVTAQIDFATREQTD 281

Query: 276 IVYDPDSKVERSIRLSKDAQRSE--------------TSQPESAVTVEQNMP-------- 313
             Y P+    ++   S+   +SE              ++QP +  T              
Sbjct: 282 EEYQPNQLPNQAAVRSQQMSQSEQLGGPQVGGVPGALSNQPSAPATAPIETAKTNAAAGN 341

Query: 314 --------HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365
                     + R      S     +++E +NYE++     T      ++RLS+AVVVN 
Sbjct: 342 NANGAKPNAAATRSTAANGSGPQNTRRDETTNYEVDRTIRHTQQKAGTVQRLSVAVVVNY 401

Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425
            R  +  G+          LA+I  +V  + G +S RGDT+ + +  F + ++       
Sbjct: 402 -RGVDKDGKPL--PMSKEQLAQIESLVRESMGFSSSRGDTLNVVNTPFTDTEVTGGELPF 458

Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485
               + + R F     A  +L+  L    L    +R           ++  +  +    +
Sbjct: 459 WQTQNFIDRLFD----AGRYLLVLLAAWLLWRKLVRP----------QLQNRQAVQQAAL 504

Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545
           ++A      P DN   +  + +  +  R  Q R+++ V  Q   R+  + + +    A +
Sbjct: 505 AAANAPMAKPADN---NKPSNEELAQHRKSQQRVSAEVQSQ---RIRDLADKDPRVVALV 558

Query: 546 LRKWARSEI 554
           +R+W  +E+
Sbjct: 559 IRQWMSNEL 567


>gi|242238981|ref|YP_002987162.1| flagellar MS-ring protein [Dickeya dadantii Ech703]
 gi|242131038|gb|ACS85340.1| flagellar M-ring protein FliF [Dickeya dadantii Ech703]
          Length = 569

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 119/549 (21%), Positives = 228/549 (41%), Gaps = 63/549 (11%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  SP Y  LY  L   D   +   L++ N+ +R +DNG +I +PS  +   R+ LA  G
Sbjct: 48  WAKSPDYRVLYSNLNDRDGGEVVTQLTQMNVPYRFADNGGAILIPSDKIYDTRLRLAQLG 107

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   +  G+EL D+   FG++ F ++I   RALEGE++RTI+++  + +ARVH+ +P  
Sbjct: 108 LPKGGA-VGFELLDQE-KFGISQFSEQINYQRALEGELSRTIETLGPVHSARVHLAIPKP 165

Query: 162 GSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV +              AI ++V+++V  L   +VTV+D  G+LL+ 
Sbjct: 166 SLFVREQKSPSASVTLNLQPGRALDEGQINAIVYMVSSSVSGLPPENVTVVDQNGRLLSQ 225

Query: 220 NE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
            +   R++    L     ++   +  I   L   +G+ N  + V A+++   ++  +  Y
Sbjct: 226 TDAAGRDLNAAQLKYATEVEGRYQRRIEAILTPIVGMGNVHAQVTAQIDFSNREQTDEQY 285

Query: 279 DPDSKVERSI--------------RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPR 324
            P+    ++               R       + ++QP +  T     P     +    +
Sbjct: 286 QPNQTPNQAAVRSQQSSQSEQLGGRNIGGVPGALSNQPSATPTAPVTTPGNQTNQNNASQ 345

Query: 325 S-------------------LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365
           +                     +  +++   NYE++     T      ++RLS+AVVVN 
Sbjct: 346 TNAANNASAGAQAGTSASGLQSSNTRRDSTINYEVDRTIRHTKQSAGNVQRLSVAVVVNY 405

Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425
              +E           +  + +I  +     G +S RGDT+ + +  F E      G+ +
Sbjct: 406 ALNSEGKAA----ALSEEQVKQIESLTRETMGFSSDRGDTLNVVNAPFNE---VTDGSGE 458

Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485
           + F    +     V +   +L+  L+   L    +R        ++  + G S       
Sbjct: 459 LPFWQKQA-FLDLVTSIGKWLLVLLVAWILWRKTVRPQMQKRAQQQALMEGLSAAK---- 513

Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545
                      ++I +  S ++     R  Q R+++    Q   R+  + E      A +
Sbjct: 514 ---------QEEDIVVQLSREEQEQQ-RKSQQRVHAENQSQ---RIRDLAESEPRVCALV 560

Query: 546 LRKWARSEI 554
           +R+W  +E+
Sbjct: 561 IRQWMSTEL 569


>gi|74317618|ref|YP_315358.1| flagellar MS-ring protein [Thiobacillus denitrificans ATCC 25259]
 gi|74057113|gb|AAZ97553.1| flagellar M-ring protein FliF [Thiobacillus denitrificans ATCC
           25259]
          Length = 548

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 133/571 (23%), Positives = 236/571 (41%), Gaps = 50/571 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M +   +++F  + T+ GR  +L+L     V +M   A   +   P Y  L+      D 
Sbjct: 7   MVVPGNVMEF--TRTAGGRKILLMLGVAASVAVM--AAVWMWGQQPEYRVLFSNFSDRDG 62

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L + N+ ++ ++ G ++ VP+  V  AR+ LA+QGLP    N G+EL +     
Sbjct: 63  GAIVAELEKMNVPYKYAEGGGAVLVPADRVHDARLKLASQGLPKGG-NVGFELME-NQRL 120

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           G + F++++   RA+EGE+AR+I+S+S + AARVH+ +P    F     +PTASV++   
Sbjct: 121 GASQFVEQVNFQRAMEGELARSIESVSAVQAARVHLALPKDSIFVSEQKQPTASVLLNLH 180

Query: 181 NPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME---RNILGKSLSIVQ 235
                  +   AI HLVA++VP L   +VTV+D  G LL+          +    +  VQ
Sbjct: 181 PGRALDPQQVSAIVHLVASSVPELATKNVTVVDQNGNLLSDAGKAPRVNGMDPSQIKYVQ 240

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK----VERSIRLS 291
            +Q ++   I   +   +G  N R+   A+++    +     Y P+        RS + S
Sbjct: 241 ELQQDVVQRIESIITPIVGPGNVRAEATADVDFSRSEQAVESYKPNQTPDAMAIRSQQTS 300

Query: 292 KDAQRSET---------SQPESAVTVEQNMPHVSDRKVPLPRSLEN-TDKKEEQSNYEIN 341
           +    S           +QP +  T    +P  +        +    + +K+   NYE++
Sbjct: 301 ESLNGSANPAGVPGALINQPPAPATAPITVPGQATPAPAAAAAQPATSTRKDATVNYEVD 360

Query: 342 TKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR 401
                       L+RLS+ VVVN  +  +  G+ A +   ++   +I  +V  A G N  
Sbjct: 361 KTIQYVQQAGGGLKRLSVGVVVNYKKTVDKAGKVAMKPLSEAEKTQITNLVKEAMGYNQA 420

Query: 402 RGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461
           RGDT+ + +  F   Q  +            + +F    N   +L+  + +  L L   +
Sbjct: 421 RGDTVNVVNSPFASAQEEDLPQPPFWKQPEYAEYFDIARNVGKYLLMGIALLLLYLKVAK 480

Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521
            L      ++            P        L  ++  AL           RN Q  ++ 
Sbjct: 481 PLLKKMSEQQALAA--------PNHPLHLEQLATDERAALPG--------QRNYQENLS- 523

Query: 522 YVSKQSDLRLLHMIEINEERFAKILRKWARS 552
                   R   +   +    A I++ W  +
Sbjct: 524 --------RAQRLANEDPRVVANIVKTWVAN 546


>gi|197120199|ref|YP_002140626.1| flagellar M-ring mounting plate protein FliF [Geobacter
           bemidjiensis Bem]
 gi|197089559|gb|ACH40830.1| flagellar M-ring mounting plate protein FliF [Geobacter
           bemidjiensis Bem]
          Length = 523

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 135/557 (24%), Positives = 244/557 (43%), Gaps = 47/557 (8%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           + + L +  +   +L   + L++  V L  ++ F A     N   Y  L+  L   D   
Sbjct: 1   MPEGLKKLLEPFLALSTAKRLVVGGVALASLLGFAALIAVANKTDYRPLFANLTQEDAGE 60

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L E  + ++IS +G +I VPS  V   R+ LA+ GLP      G+E+FD+ N FG+
Sbjct: 61  IVKKLKEQKVPYQISPDGKAILVPSDNVYDLRLSLASDGLPQGGG-VGFEIFDRKN-FGM 118

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T F+Q++   RAL+GE+ RTI  I+G+ +ARVH+ +P+   F+      TASV+++  + 
Sbjct: 119 TEFVQKLNYQRALQGELGRTIAQIAGVESARVHLALPEKALFKDQEKPATASVVLKMKSN 178

Query: 183 SVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA---NEMERNILGKSLSIVQAI 237
              +    + I HLVA+++  +D   VTVLD+ GK+L++   N+    + G      +A 
Sbjct: 179 RQLREGEVQGIVHLVASSIEGMDPEQVTVLDTRGKVLSSHSPNDPTSKVAGARQDTQRAF 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           +   E  +   L   +G     + V A  +    +  E  YDP+S   RS + S++ +  
Sbjct: 239 EKTEEEKLQSLLDRVVGSGKSVARVSASFDFKQVEKYEERYDPESAAVRSEQRSEE-KGG 297

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
            +S       V+ NM      +     +     K +E  NYE++  +         L ++
Sbjct: 298 GSSTASGVPGVQSNM---GRAQGAAGSTTGGGSKTDETLNYEVSRSTARIIEPVGSLSKV 354

Query: 358 SIAVVVNKGRLTEVLGRSA----DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           S+A++V+         +       Q +    + +I  +V +A G N+ RGD +T+ ++ F
Sbjct: 355 SVAILVDGKYELSPGAKPGATPKYQPRSPDEMQKIESLVKSAVGFNAERGDQVTVANIPF 414

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
            E    + G  Q S+ D  +    T+I   +  +  L + F  +  L ++  I+ A    
Sbjct: 415 QETG--DQGGEQPSWYD--APIVQTLIKNGLIGLAFLALLFYVIRPLMKMLKIEKAAH-- 468

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
                     PI   V    M                       ++     + + L L+ 
Sbjct: 469 -------HFLPIQDDVEQQQMLEM-------------------QKVEHEKMRVTQLELVE 502

Query: 534 MIEINEERFAKILRKWA 550
            ++ +  + A+IL+ W 
Sbjct: 503 KVKQDPYQAAQILQNWL 519


>gi|46201261|ref|ZP_00055409.2| COG1766: Flagellar biosynthesis/type III secretory pathway
           lipoprotein [Magnetospirillum magnetotacticum MS-1]
          Length = 560

 Score =  405 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 143/556 (25%), Positives = 256/556 (46%), Gaps = 9/556 (1%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           D +  F +    LG  R+  +A V +  +  F+     V +P  + LY  L++ D  +I 
Sbjct: 6   DDVNAFLQMLRGLGPMRLAAIAGVGVSILGFFIYLMSRVAAPQMELLYGDLDLGDSKQII 65

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L+   I + +  +G+ + VP       R+ +A Q LP+    +GYELFDK ++ G TS
Sbjct: 66  EKLTADKIPYELRKDGTEVWVPKDRKLDLRVRMAEQALPAGGRMAGYELFDKQDALGSTS 125

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           F Q IT VRALEGE+++TI+SI  + AARVH+V+P   +F +    P+ASV+I+      
Sbjct: 126 FQQNITMVRALEGELSKTIRSIDKVKAARVHLVLPKREAFSRDTQEPSASVIIKMNGSQR 185

Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL--SIVQAIQHE 240
                  AI+HL+AAAVP +    ++++D  G LL                 +    + +
Sbjct: 186 LDKGQVSAIQHLIAAAVPKMKPSRISIVDDKGTLLAKGFENSKEYQAQTAEDMKVKTEAK 245

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           +   I   L   LG    R+ V  ++++      E  +DP++KV RS     + ++S+ +
Sbjct: 246 LVKTIEDLLERSLGPGRVRAEVTVDMDLSQATTTEETFDPETKVVRSQVTVNEGEQSQDA 305

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           +P + VTV+QN+P  +       R+    +K +E  NYEI+ K+ +T  +  ++ ++S A
Sbjct: 306 EP-TPVTVQQNLPDPNASSGGNIRTSTKINKNQETVNYEISRKTKSTVREMGEIRKVSAA 364

Query: 361 VVVNKGRLTEVLGR-SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           V+V+  R     G+ ++ + +    L++I  +V +A G    R D + + SM F + +  
Sbjct: 365 VIVDGVREQSADGKQTSYRDRTAEELSQIEALVKSAIGYTKDRDDQVKVASMPFYKGEEL 424

Query: 420 NSGTVQVSFMDILSRHFATVI--NALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
                   F+  + R F   I  N  + +V  L +  +    + R       + G  G +
Sbjct: 425 LQAEEPGEFIFGMRRDFVEKIASNLGLSVVAILFLLLVLRPLISRAIESMQGQVGPDGRR 484

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
            + +       +T          L    + I     +   ++   V   S  ++  ++E 
Sbjct: 485 LLTTDGGAMPQLTGPSGAAMPAPLGGEEEVIADELID-IDKVEGRVKASSIRKIGEIVEK 543

Query: 538 NEERFAKILRKWARSE 553
           + E    I+R W   E
Sbjct: 544 HPEEALSIIRNWLYQE 559


>gi|302037604|ref|YP_003797926.1| flagellar M-ring protein FliF [Candidatus Nitrospira defluvii]
 gi|300605668|emb|CBK42001.1| Flagellar M-ring protein FliF [Candidatus Nitrospira defluvii]
          Length = 518

 Score =  405 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 124/553 (22%), Positives = 227/553 (41%), Gaps = 49/553 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           F         +  I+   +   I   +A   +   P    L+  L V D + I   L +A
Sbjct: 2   FSKFNQFTINQRFIILLALAGSIAGLVAVTLWTQQPDMQVLFANLAVDDASGIIDKLKDA 61

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
            + +  ++ G+++ VPS+ V   R+ LA QGLP      GYE+FD+    G++ F+Q++ 
Sbjct: 62  KVPYETANGGTTVLVPSAQVHDLRLELAGQGLP-HGGGVGYEIFDRTT-MGMSDFVQKLN 119

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI--RAINPSVYKSA 188
             RAL+GE+ARTI  +  +  ARVH+ +P+   F     R  ASV++  RA         
Sbjct: 120 YRRALQGELARTITQMPEVERARVHLAIPERRLFATEQDRARASVVVSLRASQTLSKAQI 179

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNIN 246
           + + HLV+++V  L   DVTV+D  G LL+  +++    + G  +   + ++ +IE  I 
Sbjct: 180 QGVVHLVSSSVEGLQSRDVTVVDGHGNLLSNTSSDESAGLSGTQMEYQRTLEKDIETRIQ 239

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306
             L   +GV+     V + L+    +  E  YDP+ +V RS +  ++             
Sbjct: 240 TMLERIVGVNKAVVRVSSVLDFRKIETTEERYDPNGQVVRSEQRGQEKSSGVNGTSGGVP 299

Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
            VE N+P  ++ +     S  N   K E  NYEI+            +++LS+AV+V+  
Sbjct: 300 GVESNVPGGTEAE-GGQTSSNNNQTKNETVNYEISRTVSRIVEPTGTIKKLSVAVLVDGT 358

Query: 367 RLTEV-------LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
                               + +  +  I +IV  A G ++ R D + + S+ F      
Sbjct: 359 YEGGGKAGEAGADQPKKYVPRSEEEMKRIEEIVKKAMGYSTERQDQVEVVSIQFGLGAEE 418

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
            +G V+ +     S+ +   +   V  +   L+ F+ +  L  +        G     ++
Sbjct: 419 PTGGVEAA--PDASKAWMPYVRYAVGGLLFFLIFFMVVRPLMVMLVQSAPAAGGGETPAL 476

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
            +      A  +G  P                                  ++L M + N 
Sbjct: 477 PASVGQVEAAISGKQPG---------------------------------QILDMAKNNP 503

Query: 540 ERFAKILRKWARS 552
              A ++++W ++
Sbjct: 504 ANTAVVVKQWLKN 516


>gi|290475703|ref|YP_003468592.1| flagellar basal-body MS(membrane and supramembrane)-ring and collar
           protein [Xenorhabdus bovienii SS-2004]
 gi|289175025|emb|CBJ81828.1| flagellar biosynthesis; basal-body MS(membrane and
           supramembrane)-ring and collar protein [Xenorhabdus
           bovienii SS-2004]
          Length = 569

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 127/582 (21%), Positives = 234/582 (40%), Gaps = 56/582 (9%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +Q   F    + +     + L       I + +A   ++ SP Y  LY  L   D   I 
Sbjct: 10  NQNKGFSAIISRIKADPKVPLLVAGSAAIAIVVALFLWMRSPDYRVLYSNLSDKDGGEIV 69

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L++ NI +R ++N S++ +P+  V +AR+ LA QGLP   +  GYEL DK   FG++ 
Sbjct: 70  TQLTQMNIPYRFAENSSALMIPADKVHEARLKLAQQGLPKGGA-VGYELLDKE-KFGISQ 127

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           F +++   RA EGE++RTI+S+  + +ARV + +P    F +    PTASV +R +    
Sbjct: 128 FSEQVNYNRAKEGELSRTIESLDPVESARVILSIPKPSLFVREQKSPTASVTVRLLQGRT 187

Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-NILGKSLSIVQAIQHEI 241
                  AI HLV++ V  L   +V ++D +G+LLT  +    ++    L  +Q ++   
Sbjct: 188 LDEGQVNAIAHLVSSGVAGLPPSNVKIVDQSGRLLTQADANGLDLNTTQLKYIQEVEKRF 247

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS-------------- 287
           +  I   L   +G  N  + V A+L+   ++     Y P+     +              
Sbjct: 248 QHRIETILTPVVGRGNVHAQVTAQLDFSRREQTAEEYKPNQPPNEAAVLSKQSSSSEQSG 307

Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN----------------TDK 331
             L      + ++QP +A +     P+   +     +S +N                 ++
Sbjct: 308 GSLVGGVPGALSNQPSAAPSAPIEKPNPDTKGKGDEKSDQNRNSTYNNYERLVNNSRNNR 367

Query: 332 KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKI 391
            +E  NY++      T      +ERLS+AVV+N        G    +      L++I  +
Sbjct: 368 HDELINYQVGKTISHTQLQVGAVERLSVAVVINYATTQGENGPET-KALTPEQLSQIEAL 426

Query: 392 VSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLL 451
              A G +++RGD++ + +  F +               +L +                 
Sbjct: 427 TREAMGFSTKRGDSLNVVNTPFNDTAEVIEPLPFWQHPVLLEKTLE-------------- 472

Query: 452 VTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSH 511
              LG   L  L      +K  V   +       ++               ++  D    
Sbjct: 473 ---LGRWLLLALVAWLLWRKMIVPQIAKKRAAEKAALNAQKNQQKQQAPESNAELDEKMR 529

Query: 512 SRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
            +  + R+N+ +  Q   R+  + E +    A ++R+W  +E
Sbjct: 530 RKLARQRVNAEIQSQ---RIRELAEKDPRVVALVIRQWMSNE 568


>gi|90021833|ref|YP_527660.1| flagellar MS-ring protein [Saccharophagus degradans 2-40]
 gi|89951433|gb|ABD81448.1| flagellar M-ring protein FliF [Saccharophagus degradans 2-40]
          Length = 556

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 124/559 (22%), Positives = 232/559 (41%), Gaps = 28/559 (5%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
                  +L   R   L   +   + +  A   +     Y  LY  L+  D + +   L 
Sbjct: 12  DLIDGFNNLNIIRQAGLMVGLAASVAIGFAVVLWSQGEDYKPLYGSLDRLDSSEVGAILD 71

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
              I ++I  +  ++ V    V +AR+ LA  G+    +++GYEL D+    G + FM+ 
Sbjct: 72  FNEIPYKIDGSTGALLVAVDEVHRARLVLAENGI-QGDNSTGYELLDQEQPLGTSQFMEA 130

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI--NPSVYK 186
               R +EGE+ARTI SI+ +  ARVH+ +P    F   G +P+ASV +      P   K
Sbjct: 131 TRYKRGIEGELARTIASINSVRGARVHLAIPKRSVFVGDGRKPSASVFLDLYPGRPIKPK 190

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAIQHEIEM 243
             + I +LVA+++P L + +VTV+D  G LLT   A + +  I G+ L   Q ++  + M
Sbjct: 191 QIQGIANLVASSIPELQVENVTVVDQKGNLLTTGIAEDKDLLIAGQHLEYTQKVEDGMIM 250

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            + + L+  LG  NF++ V A+++    +  E V++PD    RS +  ++ QR  +  P 
Sbjct: 251 RVRRLLSPILGDQNFKTEVAADIDFTEIEQAEEVFNPDLPAVRSEQTVEE-QRIGSGAPG 309

Query: 304 SAVTVEQNMPHVSDRKV-------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
                  N P    +                +  + +   NYE++     T  +  +L R
Sbjct: 310 GIPGALTNQPPADGQAPEQAGQGGEGAGGQPSNTRSQAVRNYELDRTVSYTKREKGRLRR 369

Query: 357 LSIAVVVNKGR-LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL- 414
           L++AVV++  + +    G           L     +V  A G ++ RGD++ I +  FL 
Sbjct: 370 LTVAVVIDDKKTINPETGAVERTQWTQQELERFAILVRDAVGYSAVRGDSVNILNEAFLP 429

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
           E  +     +     + + +    +  AL+ +    L+  L    L+ L       + + 
Sbjct: 430 EPAIEVLDDLPFWQNESILKLIKPIAGALIIVA---LLVGLVRPVLKSLAVAGVKTREQD 486

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
             K + +           L              + S     + ++N+         +  +
Sbjct: 487 EAKEMAALQAAGMDGFDSLSDETVTLTGGDALALPSPEEGYEQQLNA---------VKGL 537

Query: 535 IEINEERFAKILRKWARSE 553
           +  +  R A+++++W   E
Sbjct: 538 VAEDAGRVAQVIKRWINEE 556


>gi|27355280|dbj|BAC52264.1| fliF [Bradyrhizobium japonicum USDA 110]
          Length = 519

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 132/532 (24%), Positives = 231/532 (43%), Gaps = 20/532 (3%)

Query: 25  LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSIS 84
           + +V    +  F      V +P    L+  L V D + I   L    I F + + G+ I 
Sbjct: 1   MIAVTAALVGFFAFVIMRVTTPQMTTLFTDLSVEDSSSIIKDLERQAIQFELRNEGTIIM 60

Query: 85  VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144
           VP   V + R+ LA           GYE+FDK ++ G TSF+Q I  +RALEGE+ARTI+
Sbjct: 61  VPKDKVTRLRMKLAEG-GLPKGGGVGYEVFDKSDALGTTSFVQNINHLRALEGELARTIR 119

Query: 145 SISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDM 204
           +I  I AARVH+V+P+   F +    P+AS+++R       +   AIRHLVA+AV  L  
Sbjct: 120 AIDRIQAARVHLVLPERPLFSREAPEPSASIVVRVRGALEAQQIRAIRHLVASAVNGLKP 179

Query: 205 GDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVA 264
             V+++D  G+LL                    +  +   +   +++ +G    R  + A
Sbjct: 180 QRVSIVDEAGQLLADGAATDPEQALGDERRTTFEKRMRKQVEDIVSSVVGSGRARVQLSA 239

Query: 265 ELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPR 324
           + + +        +DP+ +V RS +  +++  S T+     VTV   +P   +++     
Sbjct: 240 DFDFNKITQTSDKFDPEGRVLRSTQTREES--SMTADNNGQVTVNNELPG--NQQNNGVA 295

Query: 325 SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY 384
           + + + K EE +NYEI+  +     +  ++ R+S+AV+V+        G  A Q +    
Sbjct: 296 AKDQSKKTEETNNYEISRTTKTEVTEAGRVNRISVAVLVDGIYSKNDKGELAYQDRTKEQ 355

Query: 385 LAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDIL---SRHFATVIN 441
           L  I  +V +A G + +RGD + + ++ F +            F+ +L          + 
Sbjct: 356 LDRIATLVRSAIGFDQKRGDQVEVVNLRFADAPSTAPIAEPSGFLGMLQFTKDDVMYFVE 415

Query: 442 ALVFLVGTLLVTFLGLHAL-RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIA 500
             V ++  L+V F+ +  L +R+   D+      G  S  +    ++      +     A
Sbjct: 416 LGVMMLLGLVVLFMVIRPLVKRILASDEVAAAISGVLSGPAASDEAAPAAGQALLPGGAA 475

Query: 501 LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
                      S    + I   V  QS  R+  + E N      I+R+W   
Sbjct: 476 -----------SAIDVATIQGQVHAQSVHRVGELAERNPNETVAIIRQWLTE 516


>gi|170769442|ref|ZP_02903895.1| flagellar M-ring protein FliF [Escherichia albertii TW07627]
 gi|170121766|gb|EDS90697.1| flagellar M-ring protein FliF [Escherichia albertii TW07627]
          Length = 552

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 130/537 (24%), Positives = 242/537 (45%), Gaps = 47/537 (8%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R+S+   +I VP+  V + R+ LA Q
Sbjct: 41  LWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRVSETSGAIEVPADKVHELRLRLAQQ 100

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE++RTI++I  +  ARVH+ +P 
Sbjct: 101 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLALPK 158

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +  +           AI HLV++AV  L  G++T++D  G LLT
Sbjct: 159 PSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAGLPTGNITLVDQGGHLLT 218

Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            +N  ER++    L     ++  I+  I   L   +G  N  + V A+L+  +++  E  
Sbjct: 219 QSNSSERDLNDIQLKYANDVESRIQQRIEAILTPIVGNGNIHAQVTAQLDFASKEQTEEQ 278

Query: 278 YDPDSKVERSIRLSK---DAQRSETSQPESAVTVEQNMPHVSDRKV-------------- 320
           Y P+    ++   S+   ++++S +  P        N P  ++                 
Sbjct: 279 YRPNGNESQTALRSRQLNESEQSGSGYPGGVPGALSNQPAPANNAPISTPPTTQNNRQQQ 338

Query: 321 --PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ 378
                 S   + ++ E SNYE++     T  +   ++RLS+AVVVN   L +        
Sbjct: 339 TSTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNDKTLPDGKPL---- 394

Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFAT 438
                 + +I  +   A G + +RGD++ + +  F  +   N  + ++ F    +     
Sbjct: 395 PLSTEQMKQIEDLTREAMGFSEKRGDSLNVVNSPFNSS---NESSGELPFWQQQA-FIDQ 450

Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498
           +++A  +L+  L+   L   A+R       A+  +   +   +   +  AV   L  ++ 
Sbjct: 451 LLSAGRWLLVLLVAWLLWRKAVRPQLTRR-AEAVKTVQQQAQARQEVEDAVEVRLSKDEQ 509

Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           +    +NQ           R+++ V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 510 LQQRRANQ-----------RMSAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|254502238|ref|ZP_05114389.1| flagellar M-ring protein FliF [Labrenzia alexandrii DFL-11]
 gi|222438309|gb|EEE44988.1| flagellar M-ring protein FliF [Labrenzia alexandrii DFL-11]
          Length = 538

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 142/555 (25%), Positives = 260/555 (46%), Gaps = 20/555 (3%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++ L++F K   +LG  RI  + +V  + + +F    F V +P    LY +L + D   I
Sbjct: 1   MNGLIEFIK---TLGPARIAAMGAVAAILVGVFAFIIFRVTAPQMTTLYNELTLEDSAAI 57

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    + F+++  G+SI VP   V + R+ LAA+GLP+  S  GYE+FD+ ++ G T
Sbjct: 58  VSQLESQGVQFKLAREGASIMVPQEQVARLRMQLAAEGLPTGGS-IGYEIFDRSDTLGAT 116

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
           SF+Q I  +RA+EGE++RTI S+  I +ARVH+V+P+   F++    P+AS+++      
Sbjct: 117 SFVQNINHLRAMEGELSRTISSLDRIRSARVHLVIPERQLFQRDRRPPSASIVLNVRGGL 176

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAIQHE 240
                 A++HLVA AV  LD   V+++D +G+LL +    + E  +  +      AI+  
Sbjct: 177 GPGEIRAVQHLVATAVDGLDPDKVSIVDESGRLLASGASSDDEGMVSARLQERSTAIESR 236

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           +   + + L + +G    R  V A+++ +        +DP+ +V RS +  ++A  S  +
Sbjct: 237 LRNQVEEILNSVVGPGRARVRVNADIDFNRLTETTETFDPEGQVVRSTQSKEEATSS--T 294

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           + +  VTV   +P+    +       + +   EE  NYEI+  +     +  ++ RLS+A
Sbjct: 295 RQDGQVTVGNELPNADANQNNDAEEQDTSSLTEEIVNYEISRSTRTEVVEAGRITRLSVA 354

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           V+V+    T+  G S    +    L  I  +V +A G +  RGD + + ++ F      +
Sbjct: 355 VLVDGTYQTDEDGNSIYTPRAQEALDRIAVLVRSAVGFDEARGDVVEVINLQFALPPELD 414

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
                  F    S         ++FL+  LL+ F+    LRR+   ++ +  E+      
Sbjct: 415 IAEPDGLFDFTRSDIMRFAELGVLFLIAILLLLFVVRPLLRRIVTPEERQPQEL------ 468

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
                       L+ +  +  +   +D F      Q++    +   S  ++  MI  +  
Sbjct: 469 -----VIGPDGTLVADSEVPKEEEEEDEFVIEWLEQAKQEGALQASSIAKVGEMISDHPT 523

Query: 541 RFAKILRKWARSEIE 555
               I+R W   +  
Sbjct: 524 EAVNIVRGWLDEQAA 538


>gi|77165822|ref|YP_344347.1| flagellar FliF M-ring protein [Nitrosococcus oceani ATCC 19707]
 gi|254434642|ref|ZP_05048150.1| flagellar M-ring protein FliF [Nitrosococcus oceani AFC27]
 gi|76884136|gb|ABA58817.1| Flagellar FliF M-ring protein [Nitrosococcus oceani ATCC 19707]
 gi|207090975|gb|EDZ68246.1| flagellar M-ring protein FliF [Nitrosococcus oceani AFC27]
          Length = 567

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 137/566 (24%), Positives = 259/566 (45%), Gaps = 39/566 (6%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           +L     +   L   + + L   I   + L +    +  +P Y  +Y  +   +   I  
Sbjct: 24  RLAALQANIGRLSLQKQVGLLLAIAASVALVVGIFMWSWAPTYQVMYGAVTGKEKGEIVA 83

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
           AL +ANI++R+++N  +I VP+S V + R+ LA +GLP  S+++G+EL ++   FG + F
Sbjct: 84  ALQKANIEYRLAENTGAIMVPASKVHEVRLQLAMEGLPR-SADTGFELLEQNPGFGASEF 142

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
           +++    RALEGE+ARTI +++ +  ARVH+ +P    F +    P+ASV++        
Sbjct: 143 LEKARYQRALEGELARTIGALNNVRNARVHLALPKQSVFIRNRRAPSASVVLDLYAGRTL 202

Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEI 241
                 AI HLVA+++PNL+   VT++D  G LLT  +  +++          + ++ + 
Sbjct: 203 DPGQVAAITHLVASSIPNLESSGVTLVDQRGNLLTRQDRSQSLGMTEGQFEHTRRLEEKY 262

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
              I   LA  +G +  R+ VVAE++    +  +  Y+P S   RS ++S++  R+ +  
Sbjct: 263 ISRIQHILAPMIGSNKVRAQVVAEVDFTVTEQTQEYYNPGSAALRSEQMSEEE-RTGSRL 321

Query: 302 PESAVTVEQNMPHVSDRKV----------PLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           P+       N P    +                 +  T  +    NYE++     +    
Sbjct: 322 PQGIPGALSNQPPADAQAPETVPEANGDEAQIEPVPTTRSQRATRNYELDRTISHSRLSP 381

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
             + RLS+AV+V++  +T+  G  +   +    LA++  +V  A G N+ RGDTI + + 
Sbjct: 382 GSIRRLSVAVLVDEKAVTDAEGAVSTLPRSPQELAQVTALVKEAVGFNAERGDTINVINA 441

Query: 412 DFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
            F+  N+      + +   D   +    V      L   LL+  +   A RRL  +    
Sbjct: 442 PFVPANEEEAFPELSLWQQDWFWQ---AVKQGGGILAILLLLLGVLRPAFRRLTAL---- 494

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS-RINSYVSKQSDL 529
                        P   A++     ++  + D   +D  S S N  + +++   S +++L
Sbjct: 495 -------------PEPVALSAIPNKDEEESDDGLQEDQLSLSSNKPTLQLSGPHSLEANL 541

Query: 530 RL-LHMIEINEERFAKILRKWARSEI 554
            +   M   +  R A++++ W  S++
Sbjct: 542 EIVREMATGDSRRVAQVVKNWLVSDV 567


>gi|261344120|ref|ZP_05971764.1| flagellar M-ring protein FliF [Providencia rustigianii DSM 4541]
 gi|282567712|gb|EFB73247.1| flagellar M-ring protein FliF [Providencia rustigianii DSM 4541]
          Length = 564

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 125/532 (23%), Positives = 245/532 (46%), Gaps = 41/532 (7%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  SP Y  L   L   D   I   L++ N+ ++I+DNGS+I VP+  V + R+ LA  G
Sbjct: 47  WFRSPDYRVLLSNLSAKDGGDIVGQLTQMNVPYQIADNGSAILVPADKVHELRLKLAQSG 106

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP    N+G+EL DK   FG++ F ++I   RALEGE++RTI+S+S + +ARVH+ +P  
Sbjct: 107 LPKGG-NTGFELLDKEQ-FGISQFSEQINYQRALEGELSRTIESLSPVQSARVHLAIPKP 164

Query: 162 GSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    PTASV +  +   V       AI H+V+++V  L   +V ++D TG+LLT 
Sbjct: 165 TLFVREQKLPTASVTVGLLPGRVLDEGQISAIVHMVSSSVTGLTAANVIIVDQTGRLLTN 224

Query: 220 NE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
           N+  +++     + + + ++  ++  I   L+  +G  N  + V A+++    +     Y
Sbjct: 225 NDNSQQSANSAQIKMTKEMETHLKERIEDILSPLVGRANIHAQVTAQMDFSKVEQTSEEY 284

Query: 279 DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN---------- 328
            P+   + +   S+    S  +       V   + +        P   EN          
Sbjct: 285 KPNQTPDAAAIRSRQNSESMQNSNGGPGGVPGALSNQPVSAPSAPIEAENKDNTGKNNQN 344

Query: 329 ---------TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQG 379
                      +++E +NYE++ K   T      ++RLS+AV+VN        G    + 
Sbjct: 345 TTTTRNGTLNSQRDETTNYEVDRKISHTQRQIGVVDRLSVAVIVNYQAQEGEKG-VEMKP 403

Query: 380 KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATV 439
                + +I+ +   A G +++RGD++ IT+  F  +    +  ++ + +    +  +  
Sbjct: 404 LPPEMIKQIDALTREAMGYSTQRGDSLNITNSLFTSD----APAIEETSLLNSPQFVSQA 459

Query: 440 INALVFLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498
           ++    ++  ++  F+    ++        A++ +   ++      I++  TT  +  + 
Sbjct: 460 LDYGKIILIAIIAWFMWRFGIKPQWVKYRKAQQAQADAETF-----IATQSTTPFVVEEE 514

Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
           I  D    D  +  R  + R+++ +  Q   R+  M E + +  A ++R+W 
Sbjct: 515 INED---MDEKTRRRLTRQRVSAEIQSQ---RIREMAEKDPQVVAMVIRQWL 560


>gi|167588531|ref|ZP_02380919.1| flagellar MS-ring protein [Burkholderia ubonensis Bu]
          Length = 487

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 114/416 (27%), Positives = 196/416 (47%), Gaps = 17/416 (4%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
              +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LA
Sbjct: 50  LVLWTRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLA 109

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
           A GLP   S  G+EL D    FG++ F ++I   RALEGE+ RTI+S++ + AARVH+ +
Sbjct: 110 ALGLPKGGS-VGFELMD-NQKFGISQFAEQINYQRALEGELQRTIESVNAVKAARVHLAI 167

Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           P    F +    P+ASV +      V    +  AI  +V++ VP++   +VT++D  G L
Sbjct: 168 PKPSVFVRDKEAPSASVFVDLYPGRVLDEGQVLAITRMVSSGVPDMPAKNVTIVDQDGNL 227

Query: 217 LTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           LT       +    L  VQ ++   +  I+  LA   G  N RS V A+++    +    
Sbjct: 228 LTQPASATGLDASQLKYVQQVERNTQKRIDAILAPIFGTGNARSQVSADIDFSRLEQTSE 287

Query: 277 VYDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPH-------VSDRKVPLPRSL 326
            Y P+   +++   S+    +       A  V     N P        V+      P++ 
Sbjct: 288 SYGPNGTPQQTAIRSQQTSTATELAQGGASGVPGALSNTPPQPASAPIVAGNGQNGPQAT 347

Query: 327 ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLA 386
             +D+K+  +NYE++            ++RLS+AVVVN   + +  G    Q    + LA
Sbjct: 348 PVSDRKDSTTNYELDKTIRHVEQPMGSVKRLSVAVVVNYQPVADSKGHVTMQPLPPAKLA 407

Query: 387 EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV---QVSFMDILSRHFATV 439
           ++ ++V  A G +++RGD++ + +  F       +      Q + +D+       +
Sbjct: 408 QVEQLVKDAMGYDAKRGDSVNVVNSTFTAAGDPYANLPWYRQPAIIDMAKEAAKWL 463


>gi|322421735|ref|YP_004200958.1| flagellar M-ring protein FliF [Geobacter sp. M18]
 gi|320128122|gb|ADW15682.1| flagellar M-ring protein FliF [Geobacter sp. M18]
          Length = 524

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 128/557 (22%), Positives = 239/557 (42%), Gaps = 46/557 (8%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           + + L +  +   +L   + L++  V L  ++ F A     N   Y  L+  L   D   
Sbjct: 1   MPEGLKKLLEPFLALSAGKRLVVGGVALASLLAFAALITVANKTDYRPLFANLTSEDAGE 60

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L E  + ++I+ +G +I VPS  V   R+ +A+ GLP      GYE+FD+ N FG+
Sbjct: 61  IVKKLKEQKVPYQIAADGKAIMVPSDKVYDLRLSMASDGLPQGGG-IGYEIFDRKN-FGM 118

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T F+Q++   RAL+GE++RTI  I+G+ +ARVH+ +P+   F+      TASV+++  + 
Sbjct: 119 TEFVQKLNYQRALQGELSRTISQIAGVESARVHLAIPEKTLFKDAEKPATASVVLKMKSN 178

Query: 183 SVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAI 237
            + +    + I HLVA+++  +D   VTVLDS GK+L+ N   +    + G      +  
Sbjct: 179 RMLREAEVQGIVHLVASSIEGMDPEQVTVLDSRGKMLSGNTPSDTASKLTGSRQETQRNF 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           +   E  +   L   +G     + V A  +    +  E  YDP+S   RS + S++ +  
Sbjct: 239 EKTQEEKLQTLLDRVVGSGKCVARVSAAFDFKQVEKYEERYDPESAAVRSEQRSEE-KGG 297

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
            T+       V+ N+          P       K +E  NYE++  +         L ++
Sbjct: 298 VTATASGVPGVQSNL---GRSAPGAPGQTGGGSKTDETLNYEVSRSTARIIEPVGALSKV 354

Query: 358 SIAVVVNKGRLTEVLGRSA----DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           S+AV+V+         +       Q +    + +I  +V +A G ++ RGD +T+ ++ F
Sbjct: 355 SVAVLVDGKYDLPAGAKPGATPKYQPRTPDEMQKIEALVKSAVGFSAERGDQVTVANIPF 414

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
            E    ++G     + D  +    T+I  L+  +G L +    +  L +   I+      
Sbjct: 415 QETG--DTGGEPPKWYD--APIVQTLIKNLLIGLGFLALIMFVIRPLLKTLKIERPASS- 469

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
                                     +      D          ++     + + + L+ 
Sbjct: 470 --------------------------SFLPVQDDAEHAHMIEMQKLAQEKMRMTQIELVE 503

Query: 534 MIEINEERFAKILRKWA 550
            ++ +  + A+IL+ W 
Sbjct: 504 KVKQDPYQAAQILQNWL 520


>gi|226941278|ref|YP_002796352.1| FliF1 [Laribacter hongkongensis HLHK9]
 gi|226716205|gb|ACO75343.1| FliF1 [Laribacter hongkongensis HLHK9]
          Length = 571

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 123/576 (21%), Positives = 248/576 (43%), Gaps = 44/576 (7%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
            ++ +  +   +L   + L+L   +     + +AA  +   P Y  L+  L   +  +++
Sbjct: 14  QRVREALERYRALPGNKKLLLFGGMAAVASILVAAYLYTREPAYKVLFSNLPDREGGQVT 73

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
            AL++ N+ ++++ +G  I VP+  V   R+ LA++GLP +S   G+EL D    FG++ 
Sbjct: 74  EALTKLNVPYQLA-DGGVIRVPAEQVYSTRLKLASEGLPKASG-IGFELMD-NQKFGISQ 130

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           F +++   RA+EGE+ARTI+++  + +ARVH+ MP    F +    PTASV++      +
Sbjct: 131 FAEQVNYQRAVEGELARTIEALGVVESARVHLAMPKQSVFVREQQLPTASVLLNLRPGFI 190

Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQAIQ 238
                   IR+LVA+AVP L   ++T++D  G L++      +    +  + L  V+ I+
Sbjct: 191 LDAGQIAGIRNLVASAVPGLPQKNITIVDQEGNLISRMPDMEDGSAGLSRRQLDYVRQIE 250

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK----VERSIRLSKDA 294
             +   I   L   +G  N R+ V A ++    +     ++P++       RS + S+  
Sbjct: 251 TSLTKRIEAILEPIVGSGNARAQVTAAVDFSEVEQTAETFNPNTPPNAGAIRSQQTSESQ 310

Query: 295 QRSE----------TSQPESAVTVEQNMPHVSDRK-VPLPRSLENT-----DKKEEQSNY 338
            R E          ++QP +A      +P  +    +P P   +N        KE  +NY
Sbjct: 311 TREEAPQGGVPGALSNQPPNAAAAPVTLPPGTQAGLMPAPNGQQNQARPVKSSKEATTNY 370

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++            L+R++ AVVVN  R T   G +      +  + +++K+V  A G 
Sbjct: 371 EVDRTIQHVRQQTGALKRVTAAVVVNFKRTTTADGNAKMTPLSEQEMQQLDKLVREAMGF 430

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
              RGD++ + +  F +     +  +Q    D  S +   ++  ++  +  L + F  + 
Sbjct: 431 TQARGDSVQVVNASFADTAGSKAA-LQDRLFDYASNNPGEILKWVLGALVVLYLLFGVIR 489

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
            + R            G  +  +     +      + +      ++        R   S 
Sbjct: 490 PVVRDIVKPKPVLPPPGSDAAAAEGEGVAGEGGMTLED-----LANLDPKELARREYDSM 544

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
           +              ++  +    A+I+++W  ++ 
Sbjct: 545 LEGA---------RQVVRADPRMAAQIIKEWVNNDE 571


>gi|73538922|ref|YP_299289.1| flagellar MS-ring protein [Ralstonia eutropha JMP134]
 gi|72122259|gb|AAZ64445.1| Flagellar FliF M-ring protein [Ralstonia eutropha JMP134]
          Length = 568

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 118/555 (21%), Positives = 223/555 (40%), Gaps = 70/555 (12%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  LY  L   D   +  +L + N+ ++ ++ G ++ VP+  V + R+ LA+Q
Sbjct: 42  LWSRAPDYKVLYSNLSERDGGAVLQSLQQMNVPYKFAEGGGAVMVPAEKVHETRLRLASQ 101

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP S + +G EL D    FG++ F +++   R LEGE+AR+I+SI+ + +ARVH+ +P 
Sbjct: 102 GLPKSGT-TGLELMD-NQKFGISQFAEQVNYQRGLEGELARSIESIAAVQSARVHLAIPK 159

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +   +PTAS++++             AI HLV+++VP L    ++++D  G LL+
Sbjct: 160 PTLFVRERQKPTASIVLQLYPGRAIDEGQVAAISHLVSSSVPELTPKAISIVDQHGNLLS 219

Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
            +  ER +    L  VQA++      I   L   +G DN R+ V A+++    +  +  Y
Sbjct: 220 NSGNERMLDATQLKYVQALEQNYLKRIESILTPIVGKDNVRAQVTADVDFSIVEHTDESY 279

Query: 279 DPDS----KVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRK--------------- 319
            P+        RS + S+  Q+  T  P        N P                     
Sbjct: 280 KPNQDPTHAAIRSQQTSESNQQGATP-PGGVPGALSNQPPAPATAPITTAQTPRAGQAPG 338

Query: 320 -------------------VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
                                   +  ++++++   NYE++            + RLS+A
Sbjct: 339 QAGAPAQPQGAQAGQAQAATSTASTGPSSNRRDSTVNYELDRTVRHVQQAPGGVRRLSVA 398

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           VVVN  +  +  G+   Q    + LA+I  +     G ++ RGD+I + +  F  +    
Sbjct: 399 VVVNYRQQADAKGKMVAQPLPPALLAQIENLTKETMGFSADRGDSINVVNSPFTVD-REV 457

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNIDDAKKGEVGGKSI 479
           +  + +     +     T    L+  +  L   F      LRR               + 
Sbjct: 458 TPELPLWKQPEMIDLAKTGAGYLLLALLALFAWFKIARPILRRYTTPPLPAPTPAAETTA 517

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
              PP                   +N ++   +   +S +           +    + + 
Sbjct: 518 ELLPPEEP----------------TNPEVLRLAAKYESDLAL---------VRDAAQRDP 552

Query: 540 ERFAKILRKWARSEI 554
              A +++ W  +++
Sbjct: 553 RLVASVIKNWIGNDL 567


>gi|254522751|ref|ZP_05134806.1| flagellar M-ring protein FliF [Stenotrophomonas sp. SKA14]
 gi|219720342|gb|EED38867.1| flagellar M-ring protein FliF [Stenotrophomonas sp. SKA14]
          Length = 547

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 121/553 (21%), Positives = 233/553 (42%), Gaps = 22/553 (3%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++  Q+F    SL  TR L L ++I V +   ++  F+   P    LY  L+       +
Sbjct: 13  EKAGQWFDRLQSLQITRRLGLMAMIAVAVAAGLSVFFWSQKPGMVPLYTGLDQKATAEAT 72

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L  A I F +      I+VP   +  AR+ LA  GL + S   G+EL ++   FG++ 
Sbjct: 73  DLLRAAQIPFALDPATGGITVPEKNLHDARLKLAGSGL-TDSGKLGFELMERDPGFGVSQ 131

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           F++      ALE E++RTI ++  +  +RVH+ +P   +F +     +ASV +       
Sbjct: 132 FVESARYQHALETELSRTINTLRPVRDSRVHLAIPKPSAFTRQRDVASASVTLELRGGQQ 191

Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHE 240
            +    +AI H+VAA++P+L    VTV+D +G++L+ ++   E  +       V+  +  
Sbjct: 192 LERSQVDAIVHMVAASIPDLAPERVTVVDQSGRMLSVSDPNSEAAVNAAQFEQVRRQETS 251

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I + L    G       V  +++    +    +Y+ + +  RS ++S+++  + T 
Sbjct: 252 FNQRIRELLEPMTGPGRVNPEVSVDMDFSVTEEARELYNGEPQKLRSEQMSENS--TTTP 309

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
            P+       N P          ++   +  K    NYE++     T     +++R+S+A
Sbjct: 310 GPQGVPGATSNSPPGQQAAPATAQAPTESS-KNATRNYELDRTLQHTRQPAGRIKRVSVA 368

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           V+V+        G+ A Q    + L  +  +V  A G N+ RGDT+++ +  F+ +    
Sbjct: 369 VLVDNVPRAGANGKVAPQPLSAAELTRVEALVKQAVGFNAERGDTVSVMNAPFVRDTTPV 428

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
            G                V +A   L+G ++V  L    LR       A +   G K   
Sbjct: 429 EGPA--------WWELPWVHDAGRMLLGAVVVLALLFGVLRP------ALRAITGQKKND 474

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
                       L+ +D + L +   D  S        +     ++        ++ + +
Sbjct: 475 EQALEPHTADVQLVDDDGMPLPALGADRASLGGPDALALPVDSYEERLRMAREAVKTDSK 534

Query: 541 RFAKILRKWARSE 553
           R A++++ W  ++
Sbjct: 535 RVAQVVKGWVAND 547


>gi|300024598|ref|YP_003757209.1| flagellar M-ring protein FliF [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299526419|gb|ADJ24888.1| flagellar M-ring protein FliF [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 561

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 186/559 (33%), Positives = 303/559 (54%), Gaps = 15/559 (2%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           Q    + S   LGR R++ L +   +   L     +F +   ++ LYV L   D++ +  
Sbjct: 5   QFQNLYSSLKGLGRQRLMALGAAGFLVFALISIGSYFASRSSFETLYVGLTPPDISSMGR 64

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L++A I F  S +G+ + V      +AR  LA +GLP  S N+GYELFDK+ + GLTSF
Sbjct: 65  ELAQAGIPFEASLDGTKLGVAVGQAEQARALLAEKGLP-GSPNAGYELFDKLGALGLTSF 123

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
           MQE+TRVRALEGE++RTIQ + GI AARVH+ +PD    R     PTASV+I+    S  
Sbjct: 124 MQEVTRVRALEGELSRTIQYLKGIRAARVHLYLPDQNGLRTKKQTPTASVVIKTDVASDA 183

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEIEMN 244
            +A AI+HL+AAA+P++   +V V+ + G LL  +     ++  + L + + I  +++ +
Sbjct: 184 TAAPAIKHLIAAAIPDMKPDEVQVIGTDGTLLGGSGSPSGDVPVQMLDLERTISTQVQDS 243

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           + +AL+ +LG+DNF  + +A LN+D  Q  E  YDP+SKVERS R+ K+AQ S      +
Sbjct: 244 VRRALSPYLGIDNFEVSAIARLNIDKHQTTETKYDPESKVERSTRVIKEAQSSTDGSGRT 303

Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
            V+VEQN+P+ +       ++    D+KEE +NYEI++ S +TT + YK+  +S+AVVVN
Sbjct: 304 DVSVEQNIPNEAP--TTKEQNKRAQDRKEETTNYEISSHSASTTSEGYKVNNISLAVVVN 361

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424
           K R+ E++G+ A    I+  +AEI K+  +A G++++RGD I++ +++F ++   +    
Sbjct: 362 KKRIAEIIGKDAKTEDIEKQVAEIEKVALSAAGLDTKRGDRISVAAVEFAQSPFGDITAP 421

Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG--EVGGKSILSP 482
              +  +L     T I +L  L+   +V F G     RL     A       G  + L+ 
Sbjct: 422 STDWSVMLMGLAGTGIKSLTILLIAAIVVFAGFKPAMRLLLTGSAATAIEGNGAVAALAG 481

Query: 483 PPISSAVTTGL---MPNDNIALDSSNQDIFSHSRNLQS------RINSYVSKQSDLRLLH 533
           PPI+ A        MP     L     + F                   ++     +L  
Sbjct: 482 PPIADAGGVTAPLDMPEMASPLLEPGANPFDSDFGSSGFAGDGMSFGRSLAFGPVEKLGA 541

Query: 534 MIEINEERFAKILRKWARS 552
           +I+ +E++   I++ W ++
Sbjct: 542 IIDRDEDQATAIMKHWVKN 560


>gi|146342729|ref|YP_001207777.1| flagellar MS-ring protein [Bradyrhizobium sp. ORS278]
 gi|146195535|emb|CAL79562.1| Flagellar basal body M-ring protein [Bradyrhizobium sp. ORS278]
          Length = 532

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 136/552 (24%), Positives = 238/552 (43%), Gaps = 27/552 (4%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +  LL F K    LG  R+  + +V    +  F      V +P    L+  L + D + I
Sbjct: 1   MQGLLDFLKG---LGAARLAAMVAVTAALVGFFGFVIMRVTAPQMTTLFTDLSMDDSSSI 57

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    I F I + GS I VP   V + R+ LA           GYE+FDK ++ G T
Sbjct: 58  IKDLERQGIAFEIRNEGSVIMVPKDKVTRLRMKLAEG-GLPKGGGVGYEIFDKSDALGTT 116

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
           SF+Q I  +RALEGE+ARTI++I  + AARVH+V+P+   F +    P+AS+++R     
Sbjct: 117 SFVQNINHLRALEGELARTIRAIDRVQAARVHLVLPERPLFSRETPEPSASIVVRVRGSL 176

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEM 243
                 AIRHLVA+AV  L    V+++D  G+LL                  A +  +  
Sbjct: 177 EANQIRAIRHLVASAVNGLKPQRVSIVDEAGQLLADGTQTDIDQQVGDERRNAFEKRMRK 236

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            +   +++ +G    R  + A+ + +        YDP+ +V RS +  ++  +S TS+  
Sbjct: 237 QVEDIVSSVVGSGRARVQLSADFDFNRITQTSDRYDPEGRVLRSSQTREE--QSATSESN 294

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
             VTV   +   + +     +  + + K EE +NYEI+  +     +  ++ R+S+AV+V
Sbjct: 295 GQVTVNNEL-PGNQQNQQGQQPKDQSKKTEETNNYEISRTTKTEVTEAGRVNRISVAVLV 353

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           +        G    + +    L  I  +V +A G + +RGD + + ++ F +  +    +
Sbjct: 354 DGAYSKNEKGDLVYKERSKEELDRIAALVRSAIGFDQKRGDQVEVVNLKFADGPVVPQIS 413

Query: 424 VQVSFMDIL---SRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
               F+ +L         VI   V ++  ++V F+ +  L +     +         +I 
Sbjct: 414 EPTGFLGMLHFTKDDVMYVIELAVMMLLGIVVVFMVVRPLVKKIISTEEIAAANAVPAIT 473

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
                + A         ++A                 ++   V  QS  R+  + + N  
Sbjct: 474 DETAQAQAHAQQTAQLIDVA-----------------QVQGQVHAQSVHRVGELADRNPG 516

Query: 541 RFAKILRKWARS 552
             A I+R+W   
Sbjct: 517 EAAAIIRQWLAE 528


>gi|312115289|ref|YP_004012885.1| flagellar M-ring protein FliF [Rhodomicrobium vannielii ATCC 17100]
 gi|311220418|gb|ADP71786.1| flagellar M-ring protein FliF [Rhodomicrobium vannielii ATCC 17100]
          Length = 547

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 184/553 (33%), Positives = 291/553 (52%), Gaps = 20/553 (3%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           MAI DQ+     S   LG  R+  L +V +  + +     ++V+    D LYV L  SDV
Sbjct: 13  MAIRDQIDALRVSLLGLGARRLAALVAVGVAIVAIVGVGSYYVSRAEKDVLYVGLTASDV 72

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           +RI   L EA I F  +   + I V      +AR+ LA +GLP++++ +GYELFDK+ S 
Sbjct: 73  SRIGAVLKEAGIPFDSNSEANKIFVNRGDTARARMILAERGLPNNAT-AGYELFDKLGSL 131

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQ ITRVRALEGEIARTI+++  + +ARVH+VM D GSFR+     TASV+++  
Sbjct: 132 GLTSFMQNITRVRALEGEIARTIEAMRAVNSARVHLVMADAGSFRREPQAATASVVVKPA 191

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-GKSLSIVQAIQH 239
             +   SA AIR +VA+AVP +    V+VL + G +L+A +    +  GK L + + +  
Sbjct: 192 -GAEPPSAAAIRQIVASAVPGMKPDHVSVLSTDGTILSAGDDGPGVASGKMLDLEKQVSR 250

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           EI  NI K L   LG+ NF ++V   LN+D +QI E  +DP+SK ERS R  K++  S+ 
Sbjct: 251 EINDNIRKTLTPVLGLGNFETSVTVRLNLDRKQINETAFDPESKAERSTRTVKESSNSQN 310

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           +  +  ++VEQN+P       P  +S   +++KEE +NYE+++KS+ T  + Y++E +++
Sbjct: 311 TNQKWNISVEQNIPTDQQNTKPSDQSKRASERKEETTNYEVSSKSVTTQSEGYRVENIAV 370

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AVV+N+  L      +      D  +  + ++VS+A G++S RGD  T+ ++DF     F
Sbjct: 371 AVVLNRKPLLAAADSAKTAP--DEQIRVVERLVSSAAGLDSLRGDKATVVALDFAGGNEF 428

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
           +     ++F D +     + + A   L+ T+L   +GL    R+   +  K         
Sbjct: 429 DQA-PSLTFWDHVMEGLGSYVIAAALLISTILFVAVGLRPSLRMILENKPKPAPQIAADK 487

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
            + P + +   T   P++                       S         +   I  +E
Sbjct: 488 RTTPVLETVAATVETPDNA--------------EGPPLPTPSAKKNSPLKSVEKAIAEDE 533

Query: 540 ERFAKILRKWARS 552
           E+ A +L  W R 
Sbjct: 534 EKAAAVLIDWIRE 546


>gi|242278626|ref|YP_002990755.1| flagellar M-ring protein FliF [Desulfovibrio salexigens DSM 2638]
 gi|242121520|gb|ACS79216.1| flagellar M-ring protein FliF [Desulfovibrio salexigens DSM 2638]
          Length = 534

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 132/559 (23%), Positives = 241/559 (43%), Gaps = 40/559 (7%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L +   F+   T   R   +++  +    ++ F+   F++N   Y  LY KL   D +R+
Sbjct: 9   LGKFQTFWSDRTVSQR---IMIGGLAATVVIAFILMVFWLNQTEYRVLYTKLYAEDASRV 65

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L      ++I DNGS+I VP+  V   R+ +A +G        GYE+FD+V   G T
Sbjct: 66  VSILQSTKEPYKIQDNGSTILVPADKVYDLRLKIAGEG-ALHGQGIGYEIFDEVQ-IGQT 123

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP- 182
            F+Q I   RAL+GE+ARTI     +  ARVH+V+P    F +    P+ASV+++  +  
Sbjct: 124 DFIQRINYQRALQGELARTISEFPQVERARVHLVLPAKSLFIEEQVDPSASVVLKLKDGE 183

Query: 183 -SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI----LGKSLSIVQAI 237
               K  + + +LV  +V  L    VT+ D  G++L   E +  +        L     +
Sbjct: 184 KLADKQIKGVLNLVVMSVEGLKPEHVTITDMRGQVLYQPEDDGGLGLNITNSQLEYKSGL 243

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           + +IE  I + L   +G D   + V A+L+   + I+   YDPD +V RS + S++  R 
Sbjct: 244 ESKIEQRIQRLLMPIVGPDKVIAKVNADLDFRQRTIKTEAYDPDGQVARSEQTSEETTRG 303

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
             +             +          + +++ ++   +NYEIN +         +L+RL
Sbjct: 304 TANVDGGVPEA-----NFRGDGFTGTATTQDSARETRTTNYEINKEEQQIIVPVGELKRL 358

Query: 358 SIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           S+AV+V+         G      + +  +  I ++VS+A G +  RGD + +++M F   
Sbjct: 359 SVAVIVDGTYTKNPDTGEMTYVPRSEEEMQRIRELVSSAVGYDEVRGDIVEVSNMSFGMQ 418

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476
            +F    +  + ++   R     +N L+  +  +LV    + AL +       +  E   
Sbjct: 419 DMFGDEGLMRTMLEYAQRLGKPFLNGLLIFLFLILVVRPVIMALIK------PRVAEEEI 472

Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536
             +   P     +       D  ALD+                 +   + +  + L + E
Sbjct: 473 DEVAGLPEAGERLAIDESDLDEEALDT-----------------ARRLENAKAQALQLSE 515

Query: 537 INEERFAKILRKWARSEIE 555
            N ++  ++L+ W + E  
Sbjct: 516 KNMDQAVQVLKSWLKQEAA 534


>gi|87119487|ref|ZP_01075384.1| flagellar M-ring protein [Marinomonas sp. MED121]
 gi|86164963|gb|EAQ66231.1| flagellar M-ring protein [Marinomonas sp. MED121]
          Length = 551

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 116/554 (20%), Positives = 229/554 (41%), Gaps = 31/554 (5%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           ++       L   R L L   +   I + +AA  + + P Y  +   +   + ++I   L
Sbjct: 15  VELLTGFNKLTVIRQLALMVGLAASIAIGLAAILWTDGPEYKPVLSSITDYNADQIVEVL 74

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           S  NI F++ +N  ++ V +    +AR+ LA  G+  + +  G E+ D+    G + F++
Sbjct: 75  SINNIPFKLDENTGALLVEADQYHQARLKLAGSGIV-NDTIVGMEIMDQEQGLGTSQFVE 133

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
                R LEGE++RTI S+  I +ARVH+ +P    F +   +P+ASV +          
Sbjct: 134 GTRYRRGLEGELSRTISSLQSIKSARVHLAIPKESVFVRDTRKPSASVFLEMYPGRRLDR 193

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQAIQHEIEM 243
              +AI +LV++++  L    VTV+D  G LL+  E     ++ GK     + ++  +  
Sbjct: 194 SQVDAIVNLVSSSISQLSAKSVTVVDQRGTLLSEKETSSELSVAGKQFDYTRKVEDVLLS 253

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            +N  L   +G D F++ V  +++  + +  +  Y+PD    RS +   +++   T+   
Sbjct: 254 RVNSILGPVVGADRFKAEVSTDVDFTSVEQTDEQYNPDLLALRSEQTLNESRNGTTNS-- 311

Query: 304 SAVTVEQNMPHVS------DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
                  N P  +                    ++E   N+E++     T      + RL
Sbjct: 312 GIPGSLTNQPPGAITAPEVANSAGAASGTNGESRQETTRNFELDRSISYTRRQQGTIRRL 371

Query: 358 SIAVVVNK-GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           S+AVVV+    +             D  L+ +  +V  A G +S RGD++++ +  F   
Sbjct: 372 SVAVVVDDLVSIDPETSELVRTPWSDDELSRLTLLVRDAVGYDSARGDSVSVINSPFAVP 431

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476
           +   +      +        + +   LV     +L+  +    L+ L   +     E   
Sbjct: 432 EPLPTPEELPFYQQ--EWFLSLIQPTLVGFFVLILLMVVVRPILKTLGEQNKIAVAEDAE 489

Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536
            SI        A  T  + +D ++L S+   +         +I   ++      +  +I 
Sbjct: 490 ASIF-------ADETDEISDDQVSLVSAEDIMV---PGSPEKIERQLNA-----IRGLIA 534

Query: 537 INEERFAKILRKWA 550
              ER A+++++W 
Sbjct: 535 EEPERVAQVVKQWV 548


>gi|39995518|ref|NP_951469.1| flagellar M-ring protein FliF [Geobacter sulfurreducens PCA]
 gi|39982281|gb|AAR33742.1| flagellar M-ring protein FliF [Geobacter sulfurreducens PCA]
 gi|298504518|gb|ADI83241.1| flagellar M-ring mounting plate protein FliF [Geobacter
           sulfurreducens KN400]
          Length = 527

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 129/565 (22%), Positives = 245/565 (43%), Gaps = 49/565 (8%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           + + L +  +   +L   +  ++  V+ + ++ F       N   Y  L+  L   D   
Sbjct: 1   MPEALNKLIQPFMALPPAKRWVVGGVVGLSVIAFTILILVANRTDYRPLFTNLTSEDAGE 60

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L E  + +RI+ +G +I VPS  V   R+ LA+ GLP      G+E+FD+ N FG+
Sbjct: 61  IVTKLKEQKVPYRIAADGKAILVPSDKVYDLRLSLASDGLPQGGG-VGFEIFDRKN-FGM 118

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T F+Q++   RAL+GE++RTI  ISG+  ARVH+V+P+   F++     TASV+++    
Sbjct: 119 TDFVQKLNYQRALQGELSRTISQISGVEQARVHLVIPEKSLFKEDEKPATASVVLKVKGQ 178

Query: 183 SVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAI 237
              +    + I HLVA+A+  ++   VTVLD  GKLL+ N   +    +      + +A 
Sbjct: 179 RQLRENDVQGIVHLVASAIEGMNPEHVTVLDQKGKLLSKNTPGDAAGKMTASMQEVQRAY 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           +   E  +   L   +G     + V A  +    +  E  YDP++ V RS + S++ Q  
Sbjct: 239 ERSTEERLQSLLDKAVGAGKSVARVSAVFDFRQVERYEEKYDPET-VVRSEQRSEEKQDG 297

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
            T        V+ N+   + +      +     K +E  NYE++  +  T      L ++
Sbjct: 298 ST-VTGGVPGVQTNLGRTAGQPAG---TSGGGSKNDETLNYEVSRATARTIEPVGTLSKV 353

Query: 358 SIAVVVNKGRLTEVLGRSADQ------GKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
           S+A++V+        G+   +       +    L +I+ +V ++ G N  RGD +T+ ++
Sbjct: 354 SVAILVDGKYDAAAAGKDGKEAKPKYTPRSPDELQKIDALVKSSVGFNVERGDQVTVVNI 413

Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471
            F +     +G     +    +  F +++   +   G L +    +  L +    + +  
Sbjct: 414 PFQDTGDVGAGEADKWWN---APIFLSLLKNGLIGFGFLALLLFVVRPLLKTLKPEKSTS 470

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
            E                           + S+   +   +     R+       S + L
Sbjct: 471 FE--------------------------PIPSAEDALNQIAE--IHRLQIGNQTVSQMEL 502

Query: 532 LHMIEINEERFAKILRKWARSEIED 556
           ++ I+    + A+I++ W R + E+
Sbjct: 503 INKIKQEPYQAAQIIQNWLRDKGEE 527


>gi|300899195|ref|ZP_07117471.1| flagellar M-ring protein FliF [Escherichia coli MS 198-1]
 gi|300357176|gb|EFJ73046.1| flagellar M-ring protein FliF [Escherichia coli MS 198-1]
          Length = 511

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 133/536 (24%), Positives = 238/536 (44%), Gaps = 49/536 (9%)

Query: 43  VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL 102
            N P Y  L+  L   D   I   L++ NI +R S+   +I VP+  V + R+ LA QGL
Sbjct: 2   ANPPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGL 61

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162
           P   +  G+EL D+   FG++ F +++   RALEGE++RTI++I  +  ARVH+ MP   
Sbjct: 62  PKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPS 119

Query: 163 SFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-A 219
            F +    P+ASV +  +           AI HLV++AV  L  G+VT++D  G LLT +
Sbjct: 120 LFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQS 179

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
           N   R++    L     ++  I+  I   L+  +G  N  + V A+L+  +++  E  Y 
Sbjct: 180 NTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYR 239

Query: 280 PDS----KVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV--------------- 320
           P+        RS +L  ++++S +  P        N P  ++                  
Sbjct: 240 PNGDESHAALRSRQL-NESEQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQA 298

Query: 321 -PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQG 379
                S   + ++ E SNYE++     T  +   ++RLS+AVVVN   L +         
Sbjct: 299 STTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPL----P 354

Query: 380 KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATV 439
             +  + +I  +   A G + +RGD++ + +  F  +   +    ++ F    +     +
Sbjct: 355 LSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPFNSS---DESGGELPFWQQQA-FIDQL 410

Query: 440 INALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNI 499
           + A  +L+  L+   L   A+R       A+  +   +   +   +  AV   L  ++ +
Sbjct: 411 MAAGRWLLVLLVAWLLWRKAVRPQLTRR-AEAMKAVQQQAQAREEVEDAVEVRLSKDEQL 469

Query: 500 ALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
               +NQ           R+ + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 470 QQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 511


>gi|157371187|ref|YP_001479176.1| flagellar MS-ring protein [Serratia proteamaculans 568]
 gi|157322951|gb|ABV42048.1| flagellar M-ring protein FliF [Serratia proteamaculans 568]
          Length = 563

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 133/545 (24%), Positives = 244/545 (44%), Gaps = 54/545 (9%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
              +  SP Y  LY  +   D   I   L++ NI FR ++NG+++ +P+  V + R+ LA
Sbjct: 44  LLLWAKSPDYRVLYSNINDRDGGAIVTQLTQMNIPFRFAENGAALLIPADKVHETRLRLA 103

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
             GLP   +  G+EL D+   FG++ F ++I   RALEGE++RTI+S+  +  ARVH+ +
Sbjct: 104 QLGLPKGGA-VGFELLDQE-KFGISQFSEQINYQRALEGELSRTIESLGPVQNARVHLAL 161

Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           P    F +    P+ASV +              AI ++V+++V  L  G+VTV+D +G+L
Sbjct: 162 PKPSLFVREQKSPSASVTLTLQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQSGRL 221

Query: 217 LTANEM-ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LT ++   R++    L     ++   +  I   LA  +G  N R+ V A+++  T++  +
Sbjct: 222 LTQSDGAGRDLNAAQLKYANEVESRYQRRIEAILAPMVGNGNARAQVTAQIDFATREQTD 281

Query: 276 IVYDPDSKVERSIRLSKDAQRSE--------------TSQPESAVTVE------------ 309
             Y P+    ++   SK   +S+              ++QP +  T              
Sbjct: 282 EEYQPNQLPNKAAVRSKQMSQSDQIGGPLVGGVPGALSNQPSAPATAPIETAKPAATGNN 341

Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369
            N    +        S     + +E +NYE++     T      ++RLS+AVVVN  R T
Sbjct: 342 ANATQPNAAATRSAASGPQNSRLDETTNYEVDRTIRHTQQKAGTVQRLSVAVVVNY-RGT 400

Query: 370 EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFM 429
           +  G+          LA+I  +V  + G +S RGDT+ + +  F +N++      ++ F 
Sbjct: 401 DKDGKPL--PMSKEQLAQIESLVRESMGFSSTRGDTLNVVNTPFTDNEVTGG---ELPFW 455

Query: 430 DILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAV 489
              +     + +A  +L+  L+   L    +R       A +         +  P++   
Sbjct: 456 QSQA-FIDRLFDAGRYLLVLLVGWLLWRKLVRPQLQNRQAVQK---AAIAAANTPMAKPA 511

Query: 490 TTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549
            +    N+ +A            R  Q R+++ V  Q   R+  + + +    A ++R+W
Sbjct: 512 ESNKQSNEELA----------QHRKSQQRVSAEVQSQ---RIRDLADKDPRVVALVIRQW 558

Query: 550 ARSEI 554
             +E+
Sbjct: 559 MSNEL 563


>gi|194292866|ref|YP_002008773.1| flagellar ms-ring protein [Cupriavidus taiwanensis LMG 19424]
 gi|193226770|emb|CAQ72721.1| FliF: Flagellar biosynthesis protein, M-ring protein, Belongs to
           the fliF family [Cupriavidus taiwanensis LMG 19424]
          Length = 576

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 120/561 (21%), Positives = 222/561 (39%), Gaps = 76/561 (13%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  LY  L   D   +  +L + N+ ++ ++ G ++ VP+  V + R+ LA+Q
Sbjct: 42  LWSRGPDYKVLYSNLSERDGGAVLQSLQQMNVPYKFAEGGGAVMVPAEKVHETRLRLASQ 101

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP S + +G EL D    FG++ F +++   R LEGE+AR+I+SI+ + +ARVH+ +P 
Sbjct: 102 GLPKSGT-AGMELMD-NQKFGISQFAEQVNYQRGLEGELARSIESIAAVQSARVHLAIPK 159

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +   +PTAS++++             AI HLV+++VP L    ++++D  G LL+
Sbjct: 160 PTLFVRERQKPTASIVLQLYPGRAIDEGQVAAISHLVSSSVPELTPKSISIVDQHGNLLS 219

Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
               ER +    L  VQA++      I   L   +G DN R+ V A+++    +  +  Y
Sbjct: 220 NTGNERMLDATQLKYVQALEQNYLKRIEAILTPIVGKDNVRAQVTADVDFSIVEHTDESY 279

Query: 279 DPDS----KVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSD----------------- 317
            P+        RS + S+  Q+  T  P        N P  +                  
Sbjct: 280 KPNQDPTRTAIRSQQTSESTQQGATP-PGGVPGALSNQPPAAAVAPVTTPQTPRAGQAPG 338

Query: 318 ------------------------RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
                                          S  ++++++   NYE++            
Sbjct: 339 QAGAPGAGQPGQPGQAGQAGQAAQGATATASSGPSSNRRDSTVNYELDRSVRHVQQAPGG 398

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           + RLS+AVVVN  +  +  G+   +    + LA+I  +   A G ++ RGD+I + +  F
Sbjct: 399 VRRLSVAVVVNYRQQADAKGKLVAEPLPPALLAQIQNLTKEAMGFSAERGDSINVVNSPF 458

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNIDDAKKG 472
              +      + +     +     ++   L+  +  L   F      LRR          
Sbjct: 459 TAEREKAEPELPLWKQPDMIALGKSLAGYLLLALLALFAWFKVARPILRRYTAPPLPAPE 518

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
                  +  PP   A                N +I   +   +S +           + 
Sbjct: 519 PKDETEAVLLPPEEPA----------------NPEILRLAAKYESDLAL---------VR 553

Query: 533 HMIEINEERFAKILRKWARSE 553
              + +    A +++ W  ++
Sbjct: 554 DAAQRDPRLVASVIKNWISND 574


>gi|188583761|ref|YP_001927206.1| flagellar MS-ring protein [Methylobacterium populi BJ001]
 gi|179347259|gb|ACB82671.1| flagellar M-ring protein FliF [Methylobacterium populi BJ001]
          Length = 538

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 145/541 (26%), Positives = 254/541 (46%), Gaps = 15/541 (2%)

Query: 15  TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF 74
           T LG  RI  +A+V L  +  F      V+ P    L+  L + D + +   L    I +
Sbjct: 9   TKLGPARIAAMAAVTLTLVGFFAFVILRVSRPDMGVLFSDLSMQDSSAVIRELDARGIAY 68

Query: 75  RISDN-GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
                 G ++  P + + K R+  A +GLP+     GYE+FDK ++F  TSF+Q +  +R
Sbjct: 69  ETKGELGQTVLAPRADLAKLRMDFAGKGLPAQGG-IGYEIFDKGDAFSSTSFVQNVNHLR 127

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRH 193
           A+EGE+AR+I++I  + AARVH+V+P+   F +    P+A+++++ +         AIRH
Sbjct: 128 AMEGELARSIRAIGRVQAARVHLVIPERRLFERDREAPSAAIVVKLMGDLDPSQVRAIRH 187

Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEMNINKALAA 251
           L A+AV  L    V+++D  G+LL       E    G        I+  +   I + +A 
Sbjct: 188 LAASAVEGLKPERVSIVDERGRLLADGARGAEAEGAGALEERQAGIERRMRAQIEEIVAG 247

Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311
            +G    R  V AEL+++  + R   +DP+S+V RS +   +   S T   E  V+V   
Sbjct: 248 IVGQGRARVQVTAELDLNRVESRSESFDPESRVVRSTQTRSEN--SLTGGAEGQVSVGNE 305

Query: 312 MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV 371
           +P  +  + P P+  +++ K EE +NYEI+  +   T +  +L+RLS+AV+V+       
Sbjct: 306 LPGANQNQPP-PQQKDSSQKNEEVTNYEISRVTKVETLEGGRLKRLSVAVLVDGVYAPGA 364

Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDI 431
            G++A Q + D+ +A I  +V  A G +  RGD + + ++ F E                
Sbjct: 365 DGKAAYQPRSDAEIARIAALVRTAVGYDKARGDQVEVVNLRFAETPAAAEFAEPGLIQSF 424

Query: 432 LSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTT 491
           LS     V+  +   V +LL   + +  +R L      +  E          P  +    
Sbjct: 425 LSPSKEDVMRLVELAVLSLLTLIVLMAVVRPLLR----RVLESDAPVAALAGPALALAGA 480

Query: 492 GLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWAR 551
           G      IA+  ++ + F  S    ++IN  +  ++  R++ M+  +     ++LR W  
Sbjct: 481 GGEGPTEIAVRENSTNKFLES----AKINGQIQAETVERVVDMVRASPTETVEVLRNWIH 536

Query: 552 S 552
            
Sbjct: 537 D 537


>gi|315286666|gb|EFU46099.1| flagellar M-ring protein FliF [Escherichia coli MS 110-3]
          Length = 510

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 133/536 (24%), Positives = 237/536 (44%), Gaps = 49/536 (9%)

Query: 43  VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL 102
            N P Y  L+  L   D   I   L++ NI +R S+   +I VP+  V + R+ LA QGL
Sbjct: 1   ANPPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGL 60

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162
           P   +  G+EL D+   FG++ F +++   RALEGE++RTI++I  +  ARVH+ MP   
Sbjct: 61  PKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPS 118

Query: 163 SFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-A 219
            F +    P+ASV +  +           AI HLV++AV  L  G+VT++D  G LLT +
Sbjct: 119 LFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQS 178

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
           N   R++    L     ++  I+  I   L+  +G  N  + V A+L+  +++  E  Y 
Sbjct: 179 NTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYR 238

Query: 280 PDS----KVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV--------------- 320
           P+        RS +L  ++++S +  P        N P  ++                  
Sbjct: 239 PNGDESHAALRSRQL-NESEQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQA 297

Query: 321 -PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQG 379
                S   + ++ E SNYE++     T  +   ++RLS+AVVVN   L +         
Sbjct: 298 STTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPL----P 353

Query: 380 KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATV 439
             +  + +I  +   A G + +RGD++ + +  F  +   + G +      +       +
Sbjct: 354 LSNEQMKQIEALTREAMGFSEKRGDSLNVVNSPF-NSSDESGGALPFWQQQVFIDQ---L 409

Query: 440 INALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNI 499
           + A  +L+  L+   L   A+R       A+  +   +   +   +  AV   L  ++ +
Sbjct: 410 LAAGRWLLVLLVAWLLWRKAVRPQLTRR-AEAVKTVQQQAQAREEVEDAVEVRLSKDEQL 468

Query: 500 ALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
               +NQ           R+ + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 469 QQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 510


>gi|194365657|ref|YP_002028267.1| flagellar MS-ring protein [Stenotrophomonas maltophilia R551-3]
 gi|194348461|gb|ACF51584.1| flagellar M-ring protein FliF [Stenotrophomonas maltophilia R551-3]
          Length = 548

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 121/553 (21%), Positives = 236/553 (42%), Gaps = 21/553 (3%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++  Q+F    SL  TR L L ++I V +   +   F+   P    LY  L+       +
Sbjct: 13  EKAGQWFDRLQSLQITRRLGLMAMIAVAVAAGLFVFFWSQKPGMVPLYTGLDQKATAEAT 72

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L  A I F++      I+VP   +  AR+ LA  GL + S   G+EL ++   FG++ 
Sbjct: 73  DLLRAAQIPFQLDPATGGITVPEKNLHDARLKLAGSGL-TDSGKLGFELMERDPGFGVSQ 131

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           F++      ALE E++RTI ++  +  +RVH+ +P   +F +     +ASV +       
Sbjct: 132 FVESARYQHALETELSRTINTLRPVRDSRVHLAIPKPSAFTRQRDVASASVTLELRGGQQ 191

Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHE 240
            +    +AI H+VAA++P+L    VTV+D +G++L+ ++   E  +       V+  +  
Sbjct: 192 LERSQVDAIVHMVAASIPDLAPERVTVVDQSGRMLSVSDPNSEAAVNAAQFEQVRRQETS 251

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I + L    G       V  +++    +    +Y+ + +  RS ++S+++  + T 
Sbjct: 252 FNQRIRELLEPMTGPGRVNPEVSVDMDFSVTEEARELYNGEPQKLRSEQMSENS--TTTP 309

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
            P+       N P          ++   +  K    NYE++     T     +++R+S+A
Sbjct: 310 GPQGVPGATSNSPPGQAAAPATAQTPTESS-KNATRNYELDRTLQHTRQPAGRIKRVSVA 368

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           V+V+        G+ A Q    + L  +  +V  A G N+ RGDT+++ +  F+ +    
Sbjct: 369 VLVDNVPRAGANGKVAPQPLSAAELTRVEALVKQAVGFNAERGDTVSVMNAPFVRDTTPV 428

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
            G                V +A   L+G ++V  L    LR        +  +   +++ 
Sbjct: 429 EGPA--------WWELPWVHDAGRMLLGAVVVLALLFGVLRPALRAITGQNKKNDEQALE 480

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
                   V    MP   +  D ++         L   ++SY  +    R    ++ + +
Sbjct: 481 PHTADVQLVDDDGMPLPALGADRAS---LGGPDALALPVDSYEERLRMAR--EAVKTDSK 535

Query: 541 RFAKILRKWARSE 553
           R A++++ W  ++
Sbjct: 536 RVAQVVKGWVAND 548


>gi|254473325|ref|ZP_05086722.1| flagellar M-ring protein FliF [Pseudovibrio sp. JE062]
 gi|211957441|gb|EEA92644.1| flagellar M-ring protein FliF [Pseudovibrio sp. JE062]
          Length = 562

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 193/566 (34%), Positives = 326/566 (57%), Gaps = 19/566 (3%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           MA  +   + + +   LG  R+++LA + L   +   AA + ++ P  + LY  LE  DV
Sbjct: 1   MAARENAEKIYSNLAELGAKRLMVLAFIGLFTFVAIGAAAYLLSRPEQEVLYANLERDDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +I +AL  + I F +S +GS+ISV      +AR+ LA +GLP  S  +GYELFD++ S 
Sbjct: 61  TQIGMALQASGIPFDVSADGSAISVGVGATARARMLLAEKGLPRGSG-AGYELFDEMGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQ +T++RALEGE+AR++QS+ G+ AARVH+V+P+  +FR+   +PTASV+IR  
Sbjct: 120 GLTSFMQSVTKIRALEGEVARSVQSMQGVKAARVHLVLPEKATFRRENQKPTASVLIRTE 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQAIQH 239
                  A++IR+LVAAAVP L    VTVLD+ G+LL A E  +    G+   +   +  
Sbjct: 180 GIQTNSIAQSIRYLVAAAVPGLTAEAVTVLDTEGQLLAAGEDAQSASTGRKAMLESNLAS 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
             E  I +ALA +LGV+NF  +V A +N D Q++ E  YDP+++VERS R+ ++   S+ 
Sbjct: 240 RKENAIRQALAPYLGVNNFEVSVSASVNTDNQRVSETSYDPETRVERSFRVVRENATSQN 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           +  E+  TVEQN+P  +       RS E  +++EE +NYEI+++++ T  D+Y++ER+SI
Sbjct: 300 ASLENPTTVEQNLPEEAVSSQSGERSSEENERREELTNYEISSRTVETIFDDYRIERMSI 359

Query: 360 AVVVNKGRLTEVLGRSADQGKID-----------SYLAEINKIVSAATGINSRRGDTITI 408
           AV+VN+ RL E + R  +  K D           + + EI +I++ A G+++ RGD +++
Sbjct: 360 AVLVNRDRLVEEMSRRVEGQKGDAVVEGEAADLTAKVEEIEEIIATAAGVDTARGDKVSV 419

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
           ++++F+      +   + ++ D+L R+  +V+NA   L+ TL++ + G   LR       
Sbjct: 420 SAVNFVLAGQQLAAIPERTWQDVLMRNMGSVVNAGAILIVTLMIIWFG---LRPAVAFLI 476

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
            K   V     +     S+AV  G +  ++  L   +         + + +   V++ + 
Sbjct: 477 PKTEVVEEGLPVGANSNSAAVRDGEIEGEDGQLPDYSNGDGLSGEGVDATV---VNRDNL 533

Query: 529 LRLLHMIEINEERFAKILRKWARSEI 554
            +L   +E+++ + A IL++W   + 
Sbjct: 534 RKLERAVEMDDMQAAIILKQWMYDQE 559


>gi|116696304|ref|YP_841880.1| flagellar MS-ring protein [Ralstonia eutropha H16]
 gi|113530803|emb|CAJ97150.1| Flagellar M-ring protein [Ralstonia eutropha H16]
          Length = 576

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 123/563 (21%), Positives = 224/563 (39%), Gaps = 74/563 (13%)

Query: 38  AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97
               +  SP Y  LY  L   D   +  +L + N+ ++ ++ G ++ VP+  V + R+ L
Sbjct: 39  VGVLWSRSPDYKVLYSNLSERDGGAVLQSLQQMNVPYKFAEGGGAVMVPAEKVHETRLRL 98

Query: 98  AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
           A+QGLP S + +G EL D    FG++ F +++   R LEGE+AR+I+SI+ + +ARVH+ 
Sbjct: 99  ASQGLPKSGT-AGMELMD-NQKFGISQFAEQVNYQRGLEGELARSIESIAAVQSARVHLA 156

Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
           +P    F +   +PTAS++++             AI HLV+++VP L    ++++D  G 
Sbjct: 157 IPKPTLFVRERQKPTASIVLQLYPGRAIDEGQVAAISHLVSSSVPELTPKSISIVDQHGN 216

Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LL+    ER +    L  VQA++      I   L   +G DN R+ V A+++    +  +
Sbjct: 217 LLSNTGNERMLDATQLKYVQALEQNYLKRIEAILTPIVGKDNVRAQVTADVDFSIVEHTD 276

Query: 276 IVYDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMPHVSDR-------------- 318
             Y P+    RS   S+    S     + P        N P  +                
Sbjct: 277 ESYKPNQDPTRSAIRSQQTSESTQQGVTPPGGVPGALSNQPPAAAAAPVTTPQTPRAGQA 336

Query: 319 ---------------------------KVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
                                            S  ++++++   NYE++          
Sbjct: 337 PGQAGAPAAGQPGQPGQAAQPGQGAQVANATASSGPSSNRRDSTVNYELDRSVRHVQQAP 396

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
             + RLS+AVVVN  +  +  G+   +    + LA+I  +   A G ++ RGD+I + + 
Sbjct: 397 GGVRRLSVAVVVNYRQQADAKGKLVAEPLPPALLAQIQNLTKEAMGFSADRGDSINVVNS 456

Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNIDDAK 470
            F   +   +  V +     +     T+   L+  +  L V F      LRR  +     
Sbjct: 457 PFTAEREKAAPEVPLWKQPDMIELGKTLAGYLLLALLALFVWFKVARPVLRRYTSPPLPA 516

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
                    +  PP   A                N +I   +   +S +           
Sbjct: 517 PEPRDETEAVLLPPDEPA----------------NPEILRLAAKYESDLAL--------- 551

Query: 531 LLHMIEINEERFAKILRKWARSE 553
           +    + +    A +++ W  ++
Sbjct: 552 VRDAAQRDPRLVASVIKNWIAND 574


>gi|37525871|ref|NP_929215.1| flagellar MS-ring protein [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36785300|emb|CAE14241.1| flagellar basal-body M-ring protein [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 567

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 133/581 (22%), Positives = 249/581 (42%), Gaps = 56/581 (9%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +Q   F      +     + L       + + +A   ++ SP Y  LY  L   D   I 
Sbjct: 10  NQTKGFSAIINQIKADPKVPLLVAGSAAVAIVIALFLWLRSPDYRVLYSNLSDKDGGDIV 69

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L++ NI +R ++NG++I +P+  V + R+ LA QGLP   + +G+EL DK   FG++ 
Sbjct: 70  TQLTQLNIPYRFAENGAAIMIPAEQVHETRLRLAQQGLPKGGA-AGFELLDKE-KFGISQ 127

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           F +++   RALEGE++RTI+S+  +  ARVH+ +P    F +    P+ASV +  +    
Sbjct: 128 FSEQVNYQRALEGELSRTIESLGPVQNARVHLALPKPSLFVREQKSPSASVTVGLLQGRT 187

Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQAIQHEI 241
                  AI H+V+++V  L  G+VT++D TG+LLT  +   R++    L  +Q +++  
Sbjct: 188 LDEGQINAIVHMVSSSVAGLPPGNVTIVDQTGRLLTQADATGRDLNTSQLKYIQEVENRF 247

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK----VERSIRLSKDAQRS 297
           +  I   L   +G  N  + V A+++   ++     Y P+        RS +LS+  Q  
Sbjct: 248 QHRIETILTPVVGRGNVHAQVTAQVDFSRREETAEEYKPNQPPNQAAVRSKQLSESEQSG 307

Query: 298 E----------TSQPESAVTVEQNMPHVSDRKVPLPR---------------SLENTDKK 332
                      ++QP S  +   + P+  +                      +    +++
Sbjct: 308 GPQVGGIPGALSNQPSSPPSAPIDKPNTKENNKNDKSDKKASSAGNSNERTVNSNRNNRR 367

Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV 392
           +E +NYE++            +ERLS+AVVVN   +    G    Q      L +I  + 
Sbjct: 368 DETTNYEVDRTIRHVQQQAGGVERLSVAVVVNYVTVEGKNGPET-QALTPEQLTKIEALT 426

Query: 393 SAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452
             A G +  RGD++ + +  F E++  N   + V    +L            +L+  L+ 
Sbjct: 427 REAMGFSKERGDSLNVVNTPFTESK-ENIEVIPVWQNPVLLEKAFDF---GRYLLLILVA 482

Query: 453 TFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS 512
             L    +        A +               +A+    +    +   S+  D  +  
Sbjct: 483 WLLWRKMVVPQLAKKRAAE--------------KAALDAQKVQKRQVTESSAEMDEKTRQ 528

Query: 513 RNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
           +  + R+++ +  Q   R+  + E +    A ++R+W  +E
Sbjct: 529 KLTRQRVSAEIQSQ---RIRELAEKDPRVVALVIRQWMSNE 566


>gi|253702508|ref|YP_003023697.1| flagellar M-ring protein FliF [Geobacter sp. M21]
 gi|251777358|gb|ACT19939.1| flagellar M-ring protein FliF [Geobacter sp. M21]
          Length = 522

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 130/557 (23%), Positives = 242/557 (43%), Gaps = 48/557 (8%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           + + L +  +   +L   + L++  V L  ++ F A     N   Y  L+  L   D   
Sbjct: 1   MPEGLKKLLEPFLALSSAKRLVVGGVALASLLGFAALIAVANKTDYRPLFANLTQEDAGE 60

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L E  + ++IS +G +I VPS  V   R+ LA+ GLP      G+E+FD+ N FG+
Sbjct: 61  IVKKLKEQKVPYQISPDGKAILVPSDNVYDLRLSLASDGLPQGGG-IGFEIFDRKN-FGM 118

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T F+Q++   RAL+GE+ RTI  I+G+ +ARVH+ +P+   F++     TASV+I+  + 
Sbjct: 119 TEFVQKLNYQRALQGELGRTIAQIAGVESARVHLALPEKALFQEQEKPATASVVIKMKSN 178

Query: 183 SVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQAI 237
              +    + + HLVA+++  +D   VTVLD+ GK+L   ++N+    + G      +A 
Sbjct: 179 RQLREGEVQGVVHLVASSIEGMDPEQVTVLDTRGKVLSSHSSNDPTSKLAGARQDTQRAF 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           +   E  +   L   +G     + V A  +    +  E  YDP+S   RS + S++ +  
Sbjct: 239 EKTEEEKLQSLLDRVVGSGKSVARVSASFDFKQVEKYEERYDPESAAVRSEQRSEE-KGG 297

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
            ++    A  V+ NM     R      +     K +E  NYE++  +         L ++
Sbjct: 298 ISTTASGAPGVQTNM----GRAQGAAGTTGGGSKTDETLNYEVSRSTARIVEPVGSLSKV 353

Query: 358 SIAVVVNKGRL----TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           S+A++V+         +       Q +    + +I  +V +A G N+ RGD +T+ ++ F
Sbjct: 354 SVAILVDGKYELAPGAKPDAAPKYQPRSPDEMQKIEALVKSAVGFNAERGDQVTVANIPF 413

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
            ++     G     +   + +   T+I   +  +  L + F  +  L +L  I+      
Sbjct: 414 -QDTGDQVGEPPAWYDAPVVQ---TLIKNGLIGLAFLALLFYVIRPLMKLLKIEKPAH-- 467

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
                     PI        +                       ++     + + L L+ 
Sbjct: 468 -------HFLPIQDDAEQAQLLEM-------------------QKVEHEKMRITQLELVE 501

Query: 534 MIEINEERFAKILRKWA 550
            ++ +  + A+IL+ W 
Sbjct: 502 KVKQDPYQAAQILQNWL 518


>gi|206890854|ref|YP_002248115.1| flagellar M-ring protein FliF [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206742792|gb|ACI21849.1| flagellar M-ring protein FliF [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 505

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 132/557 (23%), Positives = 240/557 (43%), Gaps = 57/557 (10%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           MAI D++    ++  ++   R L LA + L+   + +    ++    Y  LY  L   D 
Sbjct: 1   MAITDRVKTVLENIKNMPLNRKLALAGLTLIVFAIILTLFLWLPKQDYQVLYSNLSAEDA 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             +   L E  + +++ DN  +I VPS  V + R+ LA+QG+P S    G+E+FDK    
Sbjct: 61  GNVINKLKEKKVPYQVKDN--AIYVPSQKVHELRLELASQGIP-SGGGVGFEIFDKTQ-I 116

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLT F Q +  +RAL+GE+ RTI+ +  +   RVHI +P+   F +    PTASV+++  
Sbjct: 117 GLTEFSQRVNYIRALQGELQRTIKQLQEVDQVRVHIAIPEKSIFTEKEDHPTASVVLKLK 176

Query: 181 NPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS-LSIVQAI 237
                  +   +I HLV+++V  L    VTV+D  G LL+A +    +   + +   + I
Sbjct: 177 PGRALSKEQVSSIVHLVSSSVEGLSPQYVTVVDQYGNLLSAPKDSTQLAEATHIEYKRNI 236

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           +   E NI   L   +G       V A+++    +  E  YDPD+   R+ + +++   S
Sbjct: 237 EKTYEKNIQSMLENIVGKGKAIVRVSADIDFSKVEKVEEKYDPDTIAIRNEQRTQEKTMS 296

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
              Q      V  N P     +    +    + K++E  NYE++           +++++
Sbjct: 297 --PQQGGIPGVLSNQPG--QPQTGATQQNIQSQKQQESINYEVSKSISKILQSTGQIKKI 352

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           S+AV+++ G   E  G+     + D  + +  ++V A+ G N  RGD + + S+ F   +
Sbjct: 353 SVAVLID-GIYKEEKGKKVYVPRSDEEIKKYQELVQASIGYNKERGDYVIVESIPF---E 408

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
           +       + +  I +     +I  ++  +  L V    +  L++       KK  V  +
Sbjct: 409 IVPEEKPGIDYWGIATTILKYLIPLVIIALIILFVVKPIIELLKKPVEEKIKKKEIVISE 468

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR--LLHMI 535
             + P                                        V K+ D+R  + H+ 
Sbjct: 469 EAVPP----------------------------------------VMKERDIREEIRHIA 488

Query: 536 EINEERFAKILRKWARS 552
             N ++   ILR+W   
Sbjct: 489 RTNPKKVIAILREWITE 505


>gi|324018846|gb|EGB88065.1| flagellar M-ring protein FliF [Escherichia coli MS 117-3]
          Length = 512

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 133/536 (24%), Positives = 237/536 (44%), Gaps = 49/536 (9%)

Query: 43  VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL 102
            N P Y  L+  L   D   I   L++ NI +R S+   +I VP+  V + R+ LA QGL
Sbjct: 3   ANPPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGAIEVPAEKVHELRLRLAQQGL 62

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162
           P   +  G+EL D+   FG++ F +++   RALEGE++RTI +I  +  ARVH+ MP   
Sbjct: 63  PKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELSRTIATIGPVKGARVHLAMPKPS 120

Query: 163 SFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-A 219
            F +    P+ASV +  +           AI HLV++AV  L  G+VT++D  G LLT +
Sbjct: 121 LFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQS 180

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
           N   R++    L     ++  I+  I   L+  +G  N  + V A+L+  +++  E  Y 
Sbjct: 181 NTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYR 240

Query: 280 PDS----KVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV--------------- 320
           P+        RS +L  ++++S +  P        N P  ++                  
Sbjct: 241 PNGDESHAALRSRQL-NESEQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQA 299

Query: 321 -PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQG 379
                S   + ++ E SNYE++     T  +   ++RLS+AVVVN   L +         
Sbjct: 300 STTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPL----P 355

Query: 380 KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATV 439
             +  + +I  +   A G + +RGD++ + +  F  +   +    ++ F    +     +
Sbjct: 356 LSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPFNSS---DESGGELPFWQQQA-FIDQL 411

Query: 440 INALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNI 499
           + A  +L+  L+   L   A+R       A+  +   +   +   +  AV   L  ++ +
Sbjct: 412 LAAGRWLLVLLVAWLLWRKAVRPQLTRR-AEAMKAVQQQAQAREEVEDAVEVRLSKDEQL 470

Query: 500 ALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
               +NQ           R+ + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 471 QQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 512


>gi|300994277|ref|ZP_07180829.1| flagellar M-ring protein FliF [Escherichia coli MS 200-1]
 gi|300304942|gb|EFJ59462.1| flagellar M-ring protein FliF [Escherichia coli MS 200-1]
          Length = 508

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 132/533 (24%), Positives = 235/533 (44%), Gaps = 49/533 (9%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSS 105
           P Y  L+  L   D   I   L++ NI +R S+   +I VP+  V + R+ LA QGLP  
Sbjct: 2   PDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKG 61

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
            +  G+EL D+   FG++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F 
Sbjct: 62  GA-VGFELLDQE-KFGISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFV 119

Query: 166 KIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEM 222
           +    P+ASV +  +           AI HLV++AV  L  G+VT++D  G LLT +N  
Sbjct: 120 REQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTS 179

Query: 223 ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS 282
            R++    L     ++  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+ 
Sbjct: 180 GRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIHAQVSAQLDFASKEQTEEQYRPNG 239

Query: 283 ----KVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV----------------PL 322
                  RS +L  ++++S +  P        N P  ++                     
Sbjct: 240 DESHAALRSRQL-NESEQSGSGYPGGVPGALSNQPAPANNAPISTPPTNQNNRQQQASTT 298

Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382
             S   + ++ E SNYE++     T  +   ++RLS+AVVVN   L +           +
Sbjct: 299 SNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSN 354

Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINA 442
             + +I  +   A G + +RGD++ + +  F  +   + G +              ++ A
Sbjct: 355 EQMKQIEALTREAMGFSEKRGDSLNVVNSPF-NSSDESGGALPFWQQQAFIDQ---LLAA 410

Query: 443 LVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALD 502
             +L+  L+   L   A+R       A+  +   +   +   +  AV   L  ++ +   
Sbjct: 411 GRWLLVLLVAWLLWRKAVRPQLTRR-AEAVKTVQQQAQAREEVEDAVEVRLSKDEQLQQR 469

Query: 503 SSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
            +NQ           R+ + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 470 RANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 508


>gi|167736645|ref|ZP_02409419.1| flagellar MS-ring protein [Burkholderia pseudomallei 14]
          Length = 465

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 115/405 (28%), Positives = 193/405 (47%), Gaps = 15/405 (3%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 53  WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 112

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++SI+ + AARVH+ +P  
Sbjct: 113 LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 170

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++      V    +  A+  +V+++VP++   +VT++D  G LLT 
Sbjct: 171 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 230

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 231 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 290

Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH--------VSDRKVPLPRSLEN 328
           P+   ++S   S+    S     S          N P          S+ +   P +   
Sbjct: 291 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 350

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           +D+K+  +NYE++            ++RLS+AVVVN    T+  GR   Q      LA++
Sbjct: 351 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQV 410

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433
            ++V  A G + +RGD++ + +  F       +        D++ 
Sbjct: 411 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIE 455


>gi|197104328|ref|YP_002129705.1| flagellar M-ring protein FliF [Phenylobacterium zucineum HLK1]
 gi|196477748|gb|ACG77276.1| flagellar M-ring protein FliF [Phenylobacterium zucineum HLK1]
          Length = 548

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 140/559 (25%), Positives = 241/559 (43%), Gaps = 21/559 (3%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++QLL   +     G  R+  +  +      +  A    +  P    LY  L++ +   I
Sbjct: 1   MNQLLAAIQRF---GIGRLAAILGIGAGLAAVLFAMTMGLGEPK-ALLYSNLDLKEAGSI 56

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           + AL +A I + +  +GS+I V    V   R+ L+++GLP++ S  GYE+FD   + G T
Sbjct: 57  TQALDQAGIKYEVKGDGSTILVGRDKVAATRLMLSSRGLPTAGS-VGYEIFDDAKALGQT 115

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
            F+Q++ R RALEGE+ARTI+S+ GI +ARVH+V+P    F++   +P+ASV I     +
Sbjct: 116 DFVQQLNRQRALEGELARTIRSLDGITSARVHLVLPKRQLFQEEAEQPSASVNIGVGGRA 175

Query: 184 -VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242
              +   AI++L+A AVPNL    VTV+D   K L+  +    +  ++ S    ++  I 
Sbjct: 176 PSPEQVRAIQNLIAGAVPNLRPDRVTVVDQHAKTLSGGD--TGMAAEADSRKSEVEQRIA 233

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
             +   +   +G    R  V AEL +    +++  +DPD +V RS   + +  R      
Sbjct: 234 KQVKNLIEGVVGPGKARVNVSAELELARVTVQQETFDPDGQVIRSESTTDENSRENQEDG 293

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
                V  N+   +            + ++E  +NYEI+        +  +++RLS+AV 
Sbjct: 294 AGQAGVAGNL-PGAAALGGGGLVGSQSGRQESTTNYEISKTVRTEVQEPGQVKRLSVAVA 352

Query: 363 VNKGRLTEVLGRS-ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           V+        G+  A   +    +  I ++V  A G N  RGD +++ ++ F        
Sbjct: 353 VDGVTAIGADGQPGAYTPRTAEEMQRIEQLVRTAVGFNQDRGDQVSVINVRFPTPDTVGG 412

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
                  M          +   V  +  +L+       L +         G  G   ++ 
Sbjct: 413 VEAANPLMGFDKNDIMRAVEIGVMAIVGILMLIFVARPLLK----SATGGGGGGLPMMMG 468

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ-------SRINSYVSKQSDLRLLHM 534
            P ++  VTT       IA D + Q       + +       +RI   V   S  R+   
Sbjct: 469 GPQVTRVVTTADGQPMQIAADGTAQLALPGPGHTELESKIDMARIEGQVKASSVKRVAEF 528

Query: 535 IEINEERFAKILRKWARSE 553
           +E + E    ILR W    
Sbjct: 529 VEKHPEESVAILRSWLHET 547


>gi|78355400|ref|YP_386849.1| flagellar M-ring protein FliF [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78217805|gb|ABB37154.1| flagellar M-ring protein FliF [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 539

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 138/555 (24%), Positives = 254/555 (45%), Gaps = 39/555 (7%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +D+   F+   +   R   + +  + +V + +F    F++N P Y  LY KL   D NR+
Sbjct: 8   VDKAKTFWTRISMSQR---VFIVGLTVVVVGIFFGLIFWINQPDYRVLYSKLTPEDANRV 64

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    + +R+ + GS+I VP+  V   R+ +A +G        G+E+FD++   G T
Sbjct: 65  VTVLQAQKVRYRLDNGGSTIMVPADRVYDMRLMVAGEGSVV-GQGVGFEIFDQI-KVGQT 122

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP- 182
            F+Q+I   RAL+GE++RTI     + +ARVH+V+P    F +   +P+ASV+++  +  
Sbjct: 123 DFVQKINYQRALQGELSRTIAEFPAVESARVHLVIPHRSLFIEEQMQPSASVVLKLQDGK 182

Query: 183 -SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQAIQ 238
               K  +A+ +LV  +V  LD G ++V D++GK+L   + E+++ G     L     +Q
Sbjct: 183 KMDEKDVQAVVNLVTMSVEGLDQGKISVADTSGKILYYPKDEQSLDGMTSTQLEHKLTMQ 242

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
              E  I + L   +G     + V A+L+   + IR+ ++DP+S V RS   +++A++  
Sbjct: 243 QNFERRIEELLYPVIGPGKVIAKVNADLDFSQKTIRKKLFDPESSVVRSEIRTEEARKGT 302

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
           ++             +     +    S E+++++   +NYEIN +         +L+RLS
Sbjct: 303 SNVNAGVPEA-----NFRGDGMSGGTSTEDSNRETRNTNYEINEEEQNIIAPVGQLDRLS 357

Query: 359 IAVVVNKGRLT-EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           +AV+V+      E  G      + D  +A I ++V++A G +  RGD + ++S+ F   +
Sbjct: 358 VAVIVDGTYEKNEETGEWTYVPRSDEEVARIRQLVASAVGFDRARGDVLEVSSISFGGPE 417

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
                ++    MD   R    ++NAL+      L   + +  +         +   V G 
Sbjct: 418 ADTYMSLAEVIMDYALRLGKPLLNALL----VFLFLVMVVRPVVLALIRPKVEGEVVEGL 473

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
             L       A+  G    D +       DI +H+                   L + E 
Sbjct: 474 EGLPTGEERLALIEGEEDMDAMDALKKIDDIKAHA-------------------LQLSEQ 514

Query: 538 NEERFAKILRKWARS 552
           N E+   IL+ W + 
Sbjct: 515 NMEQAVGILKSWLKD 529


>gi|238796932|ref|ZP_04640436.1| Flagellar M-ring protein [Yersinia mollaretii ATCC 43969]
 gi|238719192|gb|EEQ11004.1| Flagellar M-ring protein [Yersinia mollaretii ATCC 43969]
          Length = 563

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 125/582 (21%), Positives = 237/582 (40%), Gaps = 59/582 (10%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +  +    +   +  +  ++L   +   + L +A   +  +P Y  LY  +   D   I 
Sbjct: 11  NNTVNLMAALERIRASPKIVLLICVSAAVTLLIALLLWAKAPDYRVLYSNISDQDGGAIV 70

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L++ N+ +R  D G +I VP   V +AR+ LA  GLP   S  G+EL D+   FG++ 
Sbjct: 71  AQLAQMNVPYRFEDRGGAIMVPVDKVYEARLKLAQLGLPKGGS-VGFELLDQE-KFGISQ 128

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           F +++   RALEGE++RTI+++  +  ARVH+ +P    F +     +ASV +   N   
Sbjct: 129 FSEQVNFQRALEGELSRTIETLGPVNGARVHLAIPKPSMFVREQKPSSASVTVNLSNGRS 188

Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242
            +     AI +L+A+AVP L+  +VT++D  G LLT     + +    L     ++ + +
Sbjct: 189 LESGQVSAISYLIASAVPGLNADNVTIVDQGGHLLTQR-GGQEVQTSQLKFTSEVEADFQ 247

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---- 298
             I   LA  +G +N ++ V A+L+  T +     + P++  ++    S+ +  SE    
Sbjct: 248 QRIQSILAPIVGRNNVKAQVTAQLDFTTHEQTAEQFQPNTASDKMSIRSRQSSDSEQGSK 307

Query: 299 ----------TSQPESAVTVEQNMP--------------HVSDRKVPLPRSLENTDKKEE 334
                     ++QP +  T     P                      +   +   ++++ 
Sbjct: 308 NGVGGVPGALSNQPPTPATAPITQPVGAKEATPTTPTTPGAKGAATTVATPVPFNNRRDN 367

Query: 335 QSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSA 394
            +NYE++            +ERLS+AVVVN     E            + + +IN +V  
Sbjct: 368 TTNYELDRTLTHIKRSAGSIERLSVAVVVNYLPAKE----GVPAALSKAQMDQINSLVKE 423

Query: 395 ATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTF 454
           A G +  RGDT+ I +  F +        V   F          ++ A  +L+  ++  F
Sbjct: 424 AVGFSVERGDTVNIVNSLFSD----VEEEVAPPFWKQAG-FINLLMAAGRYLLVAIVAWF 478

Query: 455 LGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRN 514
               A++                 + +   I + +             +  +        
Sbjct: 479 FWRKAIQP--------------AWMRNQELILARLELEKEARQAELDANKRKAESGAKNK 524

Query: 515 LQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIED 556
            + R+   ++ QS   L  + E      A +LR+W   +++ 
Sbjct: 525 AEQRVEVELNTQS---LRELAEQEPRVIALVLRQWMNKDLDS 563


>gi|189426353|ref|YP_001953530.1| flagellar M-ring protein FliF [Geobacter lovleyi SZ]
 gi|189422612|gb|ACD97010.1| flagellar M-ring protein FliF [Geobacter lovleyi SZ]
          Length = 530

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 130/563 (23%), Positives = 243/563 (43%), Gaps = 48/563 (8%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           + + L +  +   +L   + L++  V+L  ++ F       N   Y  L+  L   D   
Sbjct: 1   MPEGLKRIVEPFMALAPGKRLLVGGVVLACLLSFALLIMLANRTDYRPLFTNLASEDAGE 60

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L EA   ++I+ +G  I VP+  V + R+ LA++GLP      G+E+FD+ N FG+
Sbjct: 61  IVKKLKEAKTPYQITPDGKGIMVPADKVYELRLSLASEGLPQGGG-VGFEIFDRKN-FGM 118

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T F+Q++   RAL+GE+ARTI  ISG+  ARVH+V+P+   F++    PTASV+++    
Sbjct: 119 TEFVQKLNYQRALQGELARTITQISGVEQARVHLVIPEKTLFKEAEKPPTASVVLKMKGN 178

Query: 183 SVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-----EMERNILGKSLSIVQ 235
              +    + + HLV++++  ++  +VTVLDS GK+L+       +             +
Sbjct: 179 KNLRDNEVQGVVHLVSSSIEGMNADNVTVLDSRGKILSKGGNGMADASAKATSAMQETQR 238

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
             +  +E  +   L   +G     + V A  +    +  E  +DP++   RS + S++ +
Sbjct: 239 GYERNVEERLQTLLDRVVGGGKSVARVSATFDFKQVERVEEKFDPETIAVRSEQRSEE-K 297

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
              ++       V+ N+   +        +     K +E  NYE++  +  T      L 
Sbjct: 298 AGGSAVSTGVPGVQTNLGRTAPGAG---GAAGGGSKNDETLNYEVSRSTSRTVEPVGTLS 354

Query: 356 RLSIAVVVNKGRLTEVLGRSA------DQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
           ++S+A++V+    T   G+           +    L +I  +V  A G N  RGD I+I 
Sbjct: 355 KVSVAILVDGKYETGAPGKDGAAGKAKYVPRSPDELQKIEALVKGAVGFNQERGDQISIQ 414

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
           ++ F +       T    +   ++  F T+   L+  +G L    L L  ++ + N   A
Sbjct: 415 NIAFQDAGEAAGSTESAKWW--MNPFFLTLFKNLMIALGFLA---LMLFVVKPMLNTLRA 469

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
            +            P    +   ++P+    + +S             R    +      
Sbjct: 470 AR------------PARPDILEAIVPDAQEKMSASE------------RAQLAMHMAEQQ 505

Query: 530 RLLHMIEINEERFAKILRKWARS 552
            L+   + N  + A+IL+ W   
Sbjct: 506 ELMEKAKTNPYQVAQILQNWLGE 528


>gi|118581826|ref|YP_903076.1| flagellar M-ring protein FliF [Pelobacter propionicus DSM 2379]
 gi|118504536|gb|ABL01019.1| flagellar M-ring protein FliF [Pelobacter propionicus DSM 2379]
          Length = 528

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 123/563 (21%), Positives = 249/563 (44%), Gaps = 49/563 (8%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           + + L +  +   +L   + +++A V ++ +  F    F  N   Y  L+  L   D   
Sbjct: 1   MPEGLQRLIEPFMALSPGKRMLIAGVAILSVAAFAVLIFVANRVDYRPLFTNLSTEDAAE 60

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L +    ++I+ +G  I VP+ +V + R+ LA++GLP      G+E+FD+ N FG+
Sbjct: 61  IVKKLKDNKTPYQITADGKGIMVPADLVYEQRLALASEGLPQGGG-VGFEIFDRKN-FGM 118

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T F+Q+I   RAL+GE++RTI  ++G+  AR+H+V+P+   F++     TAS++++  + 
Sbjct: 119 TEFVQKINYQRALQGELSRTISQLNGVEQARIHLVIPEKSLFKENEKPSTASIVLKMKSG 178

Query: 183 SVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQA---- 236
              +    + I HLVA+++  ++   VTVLDS GK+L     + +   K+ S++Q     
Sbjct: 179 RSLRQNEVQGIVHLVASSIEGMEADQVTVLDSRGKVLNKGGGDPDPTSKATSVMQETQRI 238

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
            +  +E  I   L   +G     + V A  +    +  E  +DP+S   RS + S++   
Sbjct: 239 YEKNVEERIQSMLDPVVGSGRAIARVSALFDFKQVERLEEKFDPESIAVRSEQRSEEKGA 298

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
           +  +    A  V     ++               K +E  NYE++  +         L R
Sbjct: 299 TAVN----AAGVPGVQTNLGRTGAGGATQAGGAAKNDETLNYEVSRTTAKIIEPVGALSR 354

Query: 357 LSIAVVVNKGRLTEVLGRSADQ------GKIDSYLAEINKIVSAATGINSRRGDTITITS 410
           LS+AV+V+         +           +    L +I  +V +A G N+ RGD + I +
Sbjct: 355 LSVAVLVDGKYALPTAVKDGQTATPKYIPRSPEELQKIEALVKSAVGFNAERGDQLAIQN 414

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           + F +     +   Q  + +     F ++   L+  +G + +    +  L     I    
Sbjct: 415 IPFQDTGELGNIETQKWWNNPF---FMSLFKNLLIGLGFMALIIFVIRPLLVSLKI---- 467

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
                                 + P+   ++++ ++     +   +++I+  +++Q +  
Sbjct: 468 ----------------------VRPSARESIETVHEISDKLTSAERAQISMQMAEQQN-- 503

Query: 531 LLHMIEINEERFAKILRKWARSE 553
           L+   + +  + A+IL+ W   +
Sbjct: 504 LIDTAKKDPYQVAQILQNWIGED 526


>gi|332702978|ref|ZP_08423066.1| flagellar M-ring protein FliF [Desulfovibrio africanus str. Walvis
           Bay]
 gi|332553127|gb|EGJ50171.1| flagellar M-ring protein FliF [Desulfovibrio africanus str. Walvis
           Bay]
          Length = 533

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 132/559 (23%), Positives = 254/559 (45%), Gaps = 41/559 (7%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L++L  F+   +   R   +++  +    +++F+    ++N P Y  LY  L   D  R+
Sbjct: 9   LNKLTAFWSDRSMAQR---VMIGGLAASLVVIFLLLIVWLNQPDYKILYSNLPPEDAGRV 65

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  L +  ID+++ D+G ++ VPS  V + R+ +A +GL    +  G+ELFD+V   G T
Sbjct: 66  AEQLKKQKIDYKLEDSGKTVLVPSDQVYQLRLDMAGEGL-LHGTGLGFELFDEV-KIGQT 123

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
            F+Q I   RAL+GE++RTI     +  ARVHIVMP    F +  + PTAS++++     
Sbjct: 124 DFVQRINYQRALQGELSRTITEFPEVERARVHIVMPHKSLFIEEQSPPTASIILKLAEGR 183

Query: 184 --VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQAIQ 238
               K  EAI +LV+ +V  LD   +TV D  GKLL   + + ++ G     L     +Q
Sbjct: 184 ELNQKQIEAIVNLVSLSVEGLDKSQITVADVAGKLLFQADSDDSVKGLTLGQLEYRTTLQ 243

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
             +E  I + L   +GV    + V A+++   + I + +YDP S V RS + +++  +  
Sbjct: 244 RNLEQRIEQLLTPVVGVGKVIARVNADVDFSQKTITKDIYDPSSAVVRSEQRTEEQTKGR 303

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
            +            P+          S ++++++   +N+EIN +  +      +++RLS
Sbjct: 304 ANIEGGEPD-----PNFRGDGFNGSLSSQDSNRETRTTNFEINKEQQSIVVPVGEIDRLS 358

Query: 359 IAVVVNKGRLTEV--LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           +AV+V+          G      +    +  I ++V    G +  RGD I ++++ F E 
Sbjct: 359 VAVIVDGTWQAPAEGEGEPVWVPRSQEEIQRITELVRNTVGFSQSRGDAIEVSNISFGEP 418

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476
            +F   ++  + ++ + R    ++N L+  +       +    +  L     A +     
Sbjct: 419 DMFGEPSLMQTMLEYMQRLGKPILNGLLIFLFL---LLIVRPVVLSLIKPKVAAEEIEEL 475

Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536
            S+                ++ +AL+   QD      +L  R+       +  + L + E
Sbjct: 476 ISLPE-------------ADERLALEEGVQDEVL---DLNRRLE-----LAKAQALQLAE 514

Query: 537 INEERFAKILRKWARSEIE 555
            + ++   +L+ W + E  
Sbjct: 515 KDMDQAVAVLKTWLKQEAA 533


>gi|90104474|gb|ABD86511.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris BisB18]
          Length = 547

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 139/554 (25%), Positives = 241/554 (43%), Gaps = 22/554 (3%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +  L+ F K    LG  R++ + +V    I  F      V +P    L+  L V D + I
Sbjct: 9   VQGLVSFLKG---LGAARLMAMIAVTAALIGFFAFVIMRVTTPQMTTLFTDLSVEDSSGI 65

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    I F I + GS I VP   V + R+ LA           GYE+FDK ++ G T
Sbjct: 66  IKDLERQAIPFEIRNEGSVIMVPKDKVTRLRMKLAEG-GLPKGGGVGYEIFDKSDALGST 124

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
           SF+Q I  +RALEGE+ARTI++I  I AARVH+V+P+   F +    P+AS+++R     
Sbjct: 125 SFVQNINHLRALEGELARTIRAIDRIQAARVHLVLPERPLFSRETPEPSASIVLRVRGAL 184

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQA--IQHEI 241
             +   AIRH+VA+AV  L    V+++D  G+LL            +    +    +  +
Sbjct: 185 EPQQVRAIRHVVASAVNGLKPQRVSIVDEAGQLLADGAAGDPASDGATGDERRAGFEKRM 244

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
              +   +++ +G    R  + A+ + +        +DP+ +V RS +  +++ ++  + 
Sbjct: 245 RNQVEAIVSSVVGSGRARVQLTADFDYNKVTQTSDKFDPEGRVLRSSQSREESSQTAAAN 304

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
            +  VTV   +P           + + + K EE +NYEI+  +     +  ++ R+S+AV
Sbjct: 305 -DGQVTVNNELPGAQAGAG-AAVARDQSKKSEETNNYEISRVTKTEITEAGRVNRISVAV 362

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           +V+        G    Q +    L  I  +V +A G + +RGD + + ++ F E      
Sbjct: 363 LVDGIYGKNDKGEMVYQERSKDQLDRIAALVRSAIGFDQKRGDQVEVVNLRFAEAPSVPP 422

Query: 422 GTVQ---VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
                  +  +         VI   V ++  L+V F+ +  L R   I  A+ G  G   
Sbjct: 423 VAEPGGLLGMVQFTKDDVMYVIELAVMMLLGLVVMFMVIRPLVR--RILAAEPGAAGANG 480

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
           + +    S            I  D         +    +++   V  QS  R+  + + N
Sbjct: 481 VPALTDASGTA---------IGPDGLPLVAPGPNMIDIAQVQGQVHAQSVHRVGELADRN 531

Query: 539 EERFAKILRKWARS 552
               A I+R+W + 
Sbjct: 532 PNETAAIVRQWLQE 545


>gi|71906412|ref|YP_283999.1| flagellar MS-ring protein [Dechloromonas aromatica RCB]
 gi|71846033|gb|AAZ45529.1| Flagellar FliF M-ring protein [Dechloromonas aromatica RCB]
          Length = 584

 Score =  399 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 137/585 (23%), Positives = 236/585 (40%), Gaps = 61/585 (10%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +D+L + F     LG  + ++    I   I + + A  +   P +  L+  L   D   I
Sbjct: 18  VDRLREAF---NRLGSQQKIVFMVAIAALIAIIVGAILWSRQPDWKVLFSNLTEKDGGSI 74

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  L + NI  R S++G ++ VPS  V + R+ LA+QGLP      G+EL +    FG++
Sbjct: 75  AAILEQQNIPHRYSNSG-ALLVPSDRVHEVRLKLASQGLPRGGM-VGFELME-NQKFGVS 131

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
            F +++   R LEGE+ARTIQSI  + +ARVH+ +P    F +   +PTASVM+      
Sbjct: 132 QFAEQVNYQRGLEGELARTIQSIGSVQSARVHLAIPKPSVFVREEQKPTASVMLNLYPGR 191

Query: 184 VYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAIQ 238
                    I HLV+++VP L   +VTVLD +G LL+   +   E  +    +  V  ++
Sbjct: 192 TLDGGQIAGITHLVSSSVPQLPASNVTVLDQSGALLSQLKSKLTEAGLDPTQIKYVHDVE 251

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
           + I   I++ L+  LG DNF+  V A+++    +     Y P++  E +   S+    + 
Sbjct: 252 NSIIKRIDEILSPLLGADNFKVQVAADIDFSQTEQTAESYRPNNTPESTSIRSQQNNETA 311

Query: 299 -------------TSQPESAVTVEQNMPHVSDRKVP--------------------LPRS 325
                        T+QP    T     P                                
Sbjct: 312 NVNQAAGGVPGALTNQPPVPATAPLTQPATGTTPGQPAKPGEPQGKIDAAGVTAPLNAAG 371

Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385
              +  K    NYE++     T      + RLS AVVVN  +  +  G+   +   D+ +
Sbjct: 372 QPISTSKNATINYELDKTIRHTRQGMGNIRRLSAAVVVNHRKDVDKTGKPLTKAIPDAEM 431

Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445
            +IN++V  A G    RGDT+++ +  F    +  S      + D    + + + + L +
Sbjct: 432 KQINELVREAMGFTKERGDTLSVANAPF--TAIDKSENELPIWKD--PENVSYIKDILKY 487

Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505
           L+   ++ FL +  ++         + E G K                   +    D S 
Sbjct: 488 LLIAAIIAFLYIKLIQPSLKTMFPARHE-GEKHAGDGTGPGGIFGGITGSAEEAGEDGST 546

Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
           Q    +      +                 E + +  A I++ W 
Sbjct: 547 QVTIDNYAIKIQKA------------REFAEKDSKAVANIIKDWM 579


>gi|162136034|ref|YP_530830.2| flagellar MS-ring protein [Rhodopseudomonas palustris BisB18]
          Length = 539

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 139/554 (25%), Positives = 246/554 (44%), Gaps = 22/554 (3%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +  L+ F K    LG  R++ + +V    I  F      V +P    L+  L V D + I
Sbjct: 1   MQGLVSFLKG---LGAARLMAMIAVTAALIGFFAFVIMRVTTPQMTTLFTDLSVEDSSGI 57

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    I F I + GS I VP   V + R+ LA           GYE+FDK ++ G T
Sbjct: 58  IKDLERQAIPFEIRNEGSVIMVPKDKVTRLRMKLAEG-GLPKGGGVGYEIFDKSDALGST 116

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
           SF+Q I  +RALEGE+ARTI++I  I AARVH+V+P+   F +    P+AS+++R     
Sbjct: 117 SFVQNINHLRALEGELARTIRAIDRIQAARVHLVLPERPLFSRETPEPSASIVLRVRGAL 176

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQA--IQHEI 241
             +   AIRH+VA+AV  L    V+++D  G+LL            +    +    +  +
Sbjct: 177 EPQQVRAIRHVVASAVNGLKPQRVSIVDEAGQLLADGAAGDPASDGATGDERRAGFEKRM 236

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
              +   +++ +G    R  + A+ + +        +DP+ +V RS +  +++ ++  + 
Sbjct: 237 RNQVEAIVSSVVGSGRARVQLTADFDYNKVTQTSDKFDPEGRVLRSSQSREESSQTAAAN 296

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
            +  VTV   +P           + + + K EE +NYEI+  +     +  ++ R+S+AV
Sbjct: 297 -DGQVTVNNELPGAQAGAG-AAVARDQSKKSEETNNYEISRVTKTEITEAGRVNRISVAV 354

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           +V+        G    Q +    L  I  +V +A G + +RGD + + ++ F E      
Sbjct: 355 LVDGIYGKNDKGEMVYQERSKDQLDRIAALVRSAIGFDQKRGDQVEVVNLRFAEAPSVPP 414

Query: 422 GTVQ---VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
                  +  +         VI   V ++  L+V F+ +  L R   I  A+ G  G   
Sbjct: 415 VAEPGGLLGMVQFTKDDVMYVIELAVMMLLGLVVMFMVIRPLVR--RILAAEPGAAGANG 472

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
           +    P  +  +   +  D + L +   ++        +++   V  QS  R+  + + N
Sbjct: 473 V----PALTDASGTAIGPDGLPLVAPGPNMID-----IAQVQGQVHAQSVHRVGELADRN 523

Query: 539 EERFAKILRKWARS 552
               A I+R+W + 
Sbjct: 524 PNETAAIVRQWLQE 537


>gi|300931151|ref|ZP_07146498.1| flagellar M-ring protein FliF [Escherichia coli MS 187-1]
 gi|300461008|gb|EFK24501.1| flagellar M-ring protein FliF [Escherichia coli MS 187-1]
          Length = 507

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 131/533 (24%), Positives = 237/533 (44%), Gaps = 49/533 (9%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSS 105
           P Y  L+  L   D   I   L++ NI +R S+   +I VP+  V + R+ LA QGLP  
Sbjct: 1   PDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKG 60

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
            +  G+EL D+   FG++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F 
Sbjct: 61  GA-VGFELLDQE-KFGISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFV 118

Query: 166 KIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEM 222
           +    P+ASV +  +           AI HLV++A+  L  G+VT++D  G LLT +N  
Sbjct: 119 REQKSPSASVTVNLLPGRALDEGQISAIVHLVSSALAGLPPGNVTLVDQGGHLLTQSNTS 178

Query: 223 ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS 282
            R++    L     ++  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+ 
Sbjct: 179 GRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNG 238

Query: 283 ----KVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV----------------PL 322
                  RS +L  ++++S +  P        N P  ++                     
Sbjct: 239 DESHAALRSRQL-NESEQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTT 297

Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382
             S   + ++ E SNYE++     T  +   ++RLS+AVVVN   L +           +
Sbjct: 298 SNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSN 353

Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINA 442
             + +I  +   A G + +RGD++ + +  F  +   +    ++ F    +     ++ A
Sbjct: 354 EQMKQIEDLTREAMGFSEKRGDSLNVVNSPFNSS---DESGGELPFWQQQA-FIDQLLAA 409

Query: 443 LVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALD 502
             +L+  L+   L   A+R       A+  +   +   +   +  AV   L  ++ +   
Sbjct: 410 GRWLLVLLVAWLLWRKAVRPQLTRR-AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQR 468

Query: 503 SSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
            +NQ           R+ + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 469 RANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 507


>gi|284007155|emb|CBA72437.1| flagellar M-ring protein FliF [Arsenophonus nasoniae]
          Length = 554

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 141/566 (24%), Positives = 246/566 (43%), Gaps = 38/566 (6%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L  L   F    S  +  +++  +   + I  F+AA F++    Y  +Y  L   D   I
Sbjct: 12  LKGLSTIFDKIKSDPKVPLIVAGA---LAITFFIAAMFWLQGADYRPVYTNLSDKDGGEI 68

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              LS+ NI +++S +GS + VP+  V + R+ LA QGLP    N+G+EL D+   FGL+
Sbjct: 69  VTQLSQMNIPYQLSADGSMVKVPADQVHEVRLKLAQQGLPKGG-NAGFELLDQE-KFGLS 126

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
            F ++I   RALEGE+A+TI+S+  +  ARVH+ +P    F +    PTASV +   N  
Sbjct: 127 QFSEQINYQRALEGELAKTIESLGVVQRARVHLAIPKPSLFVREQKNPTASVTLNLQNGR 186

Query: 184 VYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQAIQHE 240
                   AI H+++++V  L   +VT++D  G LLT  +   R++    L+ VQ+I++ 
Sbjct: 187 KLDEGQIAAIVHMISSSVSGLASSNVTIVDQLGNLLTQPDGISRDLNLTQLNYVQSIENR 246

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
            +  I   +   +G  N  + V A++N    +     Y P+     S   SK   RSE +
Sbjct: 247 YKQRIESIIMPLVGRGNVHAQVTAQINFARTEETAEEYKPNQPPNESAVRSKQTSRSEQN 306

Query: 301 QP---ESAVTVEQNMPH---------VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
                        N P           +D+  P P +  +  + +E +NYEI+ +   T 
Sbjct: 307 GQLLVGGVPGALSNQPTPAPKAPIDKPNDKNAPQPINNNHNSRVDETTNYEIDRRIRHTQ 366

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
           H    L+RLS+A++VN    ++           D  L +I  +   A   + +RGD++ +
Sbjct: 367 HQIGNLQRLSVAIIVNYAD-SDKKENDDSLPLTDEKLTQIKTLAQEAMEFSEQRGDSLYV 425

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
            +  F + Q      ++     +     A V+    +L+  LL   L    ++   +   
Sbjct: 426 VNAPF-QAQDAELKPLEFWQQPVF---IANVLEIGRYLLLLLLAWLLWRLVVKPQLHKKR 481

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
             +      + L     +       +  D  A               + R+N+ +  Q  
Sbjct: 482 QAEKAAKMAAELKVKKDAEQAARQKIEQDEAA----------RQEQTRQRVNAEMHTQ-- 529

Query: 529 LRLLHMIEINEERFAKILRKWARSEI 554
            RL  M++ +    A ++R W   E+
Sbjct: 530 -RLREMVQKDPRVVAMVVRDWMSKEL 554


>gi|94314180|ref|YP_587389.1| flagellar MS-ring protein [Cupriavidus metallidurans CH34]
 gi|93358032|gb|ABF12120.1| flagellar MS-ring protein [Cupriavidus metallidurans CH34]
          Length = 563

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 111/565 (19%), Positives = 228/565 (40%), Gaps = 62/565 (10%)

Query: 25  LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSIS 84
           +       +        +  +P Y  LY  L   D   +  +L + N+ ++ ++ G ++ 
Sbjct: 25  MMLGGAALVAAIAVGVMWSRAPDYKVLYSNLSERDGGAVIQSLQQMNVPYKFAEGGGAVM 84

Query: 85  VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144
           VP+  V + R+ LA+QGLP S +            FG++ F +++   R LEGE+AR+I+
Sbjct: 85  VPADKVAETRLRLASQGLPKSGTTGME--LMDNQKFGISQFAEQVNYQRGLEGELARSIE 142

Query: 145 SISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNL 202
           SI  + +ARVH+ +P    F +   +PTASV+++             AI HLV+++VP L
Sbjct: 143 SIGAVQSARVHLAIPKPTLFVRERQKPTASVVLQLYPGRAVDEGQVAAITHLVSSSVPEL 202

Query: 203 DMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAV 262
               ++++D  G LL+    +R++    L  VQ ++      +   LA  LG DN  + V
Sbjct: 203 TPKSISIVDQQGNLLSGTN-DRSLDASQLKYVQQVEQGYVKRVESILAPILGKDNIHAQV 261

Query: 263 VAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPESAVT----------- 307
            A+++  + +  +  Y P+        RS + S+   +  T                   
Sbjct: 262 TADVDFSSVEHTDESYKPNQDPTKAAIRSQQTSESNSQGGTPVGGVPGALSNQPPAAAAA 321

Query: 308 -----------------VEQNMPHVSDRKVP-LPRSLENTDKKEEQSNYEINTKSIATTH 349
                             + N P  + +      ++  +  +++  +NYE++        
Sbjct: 322 PVTTPQPPRQPGQPNPPAQANQPAQTTQTTQTAEKTGPSNSRRDSTTNYELDRVVRHVQQ 381

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
               ++RLS+AVVVN     +  G+   +      LA+I  +   A G ++ RGD++ + 
Sbjct: 382 AAGGVKRLSVAVVVNYRTKVDAKGKPVTEALSAKELAQIENLTKEAMGFSADRGDSLNVV 441

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
           +  F  + +     V V     +     T +  L+  +  + + F     + R +     
Sbjct: 442 NSPFT-SDIKTEPEVPVWKQPQMIDLAKTGVGYLLLALLAVFLWFKVARPVLRKYTAPP- 499

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
                    + +P   ++A    L+P +      +N ++   +   +S +          
Sbjct: 500 ---------LPAPTETAAATEAVLLPPEE----ETNPEVLRLAAKYESDLAL-------- 538

Query: 530 RLLHMIEINEERFAKILRKWARSEI 554
            +    + +    A +++ W  ++ 
Sbjct: 539 -VRDAAQRDPRLVASVIKTWMANDE 562


>gi|119476321|ref|ZP_01616672.1| flagellar M-ring protein FliF [marine gamma proteobacterium
           HTCC2143]
 gi|119450185|gb|EAW31420.1| flagellar M-ring protein FliF [marine gamma proteobacterium
           HTCC2143]
          Length = 562

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 123/560 (21%), Positives = 243/560 (43%), Gaps = 38/560 (6%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
            F     ++G  R L L   +   + +  A   +     Y  LY  L+  D   +   L 
Sbjct: 19  DFLNGLGNIGILRQLFLMVGLAASVAMGGAIVLWSVGEEYRPLYSSLDHMDPGEVLNILQ 78

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
            + ID ++ +N  ++ V +  +  AR+ LA  G+    S  G+E+ DK    G + FM+ 
Sbjct: 79  SSQIDHKVDENTGALLVAADQIHDARLKLAGAGISPDGS-FGFEMLDKEQPLGTSQFMES 137

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS--VYK 186
               R LEGE+ RTI SI  +  ARVH+ +P   +F +   +PTASV +     S    +
Sbjct: 138 ARFKRGLEGELGRTIASIQAVRGARVHLAIPKTSAFIRDVRKPTASVFLDLYGGSGINTE 197

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEMN 244
              AI ++VA ++P L + +VTV+D  G LL+  + +++  +  K L  V+ ++  +   
Sbjct: 198 QVRAIANMVAFSIPELTIQNVTVVDQRGNLLSNFDADQDMAMAHKQLDYVREMEGRLVKR 257

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE------ 298
           ++  L   LG  NFR+ + A ++    +  + +++PD    RS +  ++ +         
Sbjct: 258 VSSILEPVLGEGNFRAEISANVDFTQVEQTDELFNPDLPAIRSEQTVEEGRGGGGVGGVP 317

Query: 299 ---TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
              ++QP       +    + D          +T +++   NYE++     T H   +L 
Sbjct: 318 GALSNQPPRDGQAPE---QIVDGGAAALAESVSTSRRQSVRNYELDRTISHTRHQVGRLR 374

Query: 356 RLSIAVVVNKGR-LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           RLS+AV+V+    +    G         S L ++  +V  A G ++ RGD++ I +  F 
Sbjct: 375 RLSVAVLVDNTTNIDSETGEIVSVAIEQSELDQLAILVRDAVGFDAARGDSVNIINSAFA 434

Query: 415 ---ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471
                ++     V +     + R+      A  F++  +L+ F+   A R L +     +
Sbjct: 435 VKEAPEVVPMEEVPIWQQPTIERYIKY---AGAFVLIMMLLFFVMRPAFRNLTDGSKELR 491

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFS-HSRNLQSRINSYVSKQSDLR 530
                +++       S      + ++ + L      + S  ++N + ++++         
Sbjct: 492 ELEAQRALGDL----SGDLGSGLADETVTLSGGESLLLSGPNKNYEQQLST--------- 538

Query: 531 LLHMIEINEERFAKILRKWA 550
           +  +I  +  R A++++KW 
Sbjct: 539 VRGLIAEDPGRVAQVVKKWV 558


>gi|253688952|ref|YP_003018142.1| flagellar M-ring protein FliF [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251755530|gb|ACT13606.1| flagellar M-ring protein FliF [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 574

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 117/555 (21%), Positives = 234/555 (42%), Gaps = 63/555 (11%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
              +   P Y  LY  +   D   I   L++ NI +R +++G +I +P+  V + R+ LA
Sbjct: 44  LTLWAKGPDYRVLYSNINDRDGGAIVGELTKLNIPYRFAESGGAIMIPAEKVYETRLRLA 103

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
             GLP   +  G+EL D+   FG++ F ++I   RALEGE++RTI+++  +  ARVH+ +
Sbjct: 104 QLGLPKGGA-VGFELLDQE-KFGISQFSEQINYQRALEGELSRTIETLGPVQNARVHLAI 161

Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           P    F +    P++SV +              +I ++V+++V  L   +VTV+D TG+L
Sbjct: 162 PKPSLFVREQKAPSSSVTLTLQPGRALDEGQINSIVYMVSSSVAGLPPDNVTVVDQTGRL 221

Query: 217 LT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LT A    R++    L     ++   +  I   +A  +G+ N  + V A+++   ++  +
Sbjct: 222 LTQAGGSGRDLNAAQLKYSNEVEAMYQRRIESIIAPMVGMGNVHAQVTAQIDFSAREQTD 281

Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE-------- 327
             Y P+   +++   S+   +SE     +   V   + +        P + +        
Sbjct: 282 EQYQPNQPPDKAAVRSQQTSQSEQRGGPNVGGVPGALSNQPAPAPTAPIATQPNNANANA 341

Query: 328 ----------------------------NTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
                                       +  + +  +NYE++   + T H    ++RLS 
Sbjct: 342 NNQAGQQNQNNAAGAQANAANANTAIQTSNIRNDATTNYEVDKTILHTKHSTGGVKRLSA 401

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AV+VN        G+       +  + +I  +   A G ++ RGDT+ + +  F+++   
Sbjct: 402 AVIVNYQP-PGEDGKPV--ALTEEQIKQIETVAREAMGFSAERGDTLNVVNTPFMDS--- 455

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
             G+ ++ F    +  F  ++ A  +L+  ++   L    +R        ++        
Sbjct: 456 TDGSGELPFWQKQA-FFDLLMEAGRWLLVLIVAWILWRKLVRPQLQRKAQQQE------- 507

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
                 + A        DN  + + +       R  Q R+N+ +      R+  M E + 
Sbjct: 508 -----AALAAAALSQGADNDVMVNLSSSEVEQQRKSQQRVNAEMQS---NRIREMAENDP 559

Query: 540 ERFAKILRKWARSEI 554
              A ++R+W  +E+
Sbjct: 560 RVVALVIRQWMSTEL 574


>gi|21231374|ref|NP_637291.1| flagellar MS-ring protein [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66768573|ref|YP_243335.1| flagellar MS-ring protein [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188991617|ref|YP_001903627.1| flagellar MS-ring protein [Xanthomonas campestris pv. campestris
           str. B100]
 gi|21113037|gb|AAM41215.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66573905|gb|AAY49315.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004]
 gi|167733377|emb|CAP51578.1| Flagellar biosynthesis lipoprotein FliF [Xanthomonas campestris pv.
           campestris]
          Length = 573

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 116/565 (20%), Positives = 229/565 (40%), Gaps = 23/565 (4%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++  Q+F    S+  TR L + ++I + +   +A  F+   P Y  LY  L+       +
Sbjct: 15  EKAGQWFDRIRSMQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQALYTGLDDKGNAEAA 74

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L  A I F+I  +  +ISVP   +  AR+ LA  GL    +  G+EL +K   FG++ 
Sbjct: 75  DLLRTAQIPFKIDQSTGAISVPQDRLYDARLKLAGSGLTGQQTGGGFELMEKDPGFGVSQ 134

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           F++      ALE E++RTI ++  +  ARVH+ +P   +F +     +ASV++       
Sbjct: 135 FVENARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQG 194

Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240
            +    +AI +LVA+++P++    VTV+D +G++L+  +   +          V+  +  
Sbjct: 195 LERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESS 254

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I + L    G       V  +++    +    +Y+ +    RS ++S  +  +   
Sbjct: 255 YNQRIRELLEPMTGAGRVNPEVSVDMDFSVVEEARELYNGEPAKLRSEQVSDSSTSATGP 314

Query: 301 QPESAVTVEQ-----------NMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
           Q     T                P           +      K    NYE++     T  
Sbjct: 315 QGPPGATSNSPGQPPAPAATAGAPGAPAAGQAATPAAPTESSKSATRNYELDRTLQHTRQ 374

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
              +++R+S+AV+++        G+  +Q    + L  I  +V  A G ++ RGDT+++ 
Sbjct: 375 PAGRIKRVSVAVLLDNVPRPGAKGKIVEQPLTAAELTRIEGLVKQAVGFDAARGDTVSVM 434

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
           +  F+   +      +             V N L  LVG ++V  L    +R        
Sbjct: 435 NAPFVREAVAGEEGPKWWEDP-------RVQNGLRLLVGAVVVLALLFGVVRPTLRQLTG 487

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
                             +    ++  D+  +    +D     ++ +  I    + +  +
Sbjct: 488 TAAVKEKHKKGGNDGTPQSADVRMVDEDDDLMPRLEEDTAQIGQDKKLPIALPDAYEERV 547

Query: 530 RL-LHMIEINEERFAKILRKWARSE 553
           RL    ++ + +R A++++ W  SE
Sbjct: 548 RLAREAVKADSKRVAQVVKGWVASE 572


>gi|82702474|ref|YP_412040.1| flagellar MS-ring protein [Nitrosospira multiformis ATCC 25196]
 gi|82410539|gb|ABB74648.1| flagellar M-ring protein FliF [Nitrosospira multiformis ATCC 25196]
          Length = 567

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 118/558 (21%), Positives = 225/558 (40%), Gaps = 50/558 (8%)

Query: 14  GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73
            T L   + + L   +   + L  A   +   P Y  L+  +   D   I  +L + N+ 
Sbjct: 37  LTRLSSQQKIGLMLTVSSLVALLAAGWMWTQGPDYKVLFSNVSDGDGGAIIASLQQMNVP 96

Query: 74  FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
           ++ ++ G +I VPSS V   R+ LA+QGLP      G+EL +    FG + F++++   R
Sbjct: 97  YKFAEGGGAILVPSSQVHDTRLKLASQGLPRGGL-VGFELME-NQKFGTSQFLEQVNFQR 154

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEAI 191
           ALEGE+AR++Q+++ + +ARVH+ +P    F +   +P+ASV++          +   AI
Sbjct: 155 ALEGELARSVQALAAVDSARVHLAIPKQSVFMREQQKPSASVLVNLYPGRTLDPQQVNAI 214

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAIQHEIEMNINKA 248
            HLV+++VPNL + +VTV+D  G LLT    +     +    L  + A++      I   
Sbjct: 215 VHLVSSSVPNLHVKNVTVVDQQGDLLTRIDESNPNTGLDPAQLKYLHALEQSYIKRIEAI 274

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308
           L   +G +N R+ V AE++    +     Y P+     S   S+ +  S     ++   V
Sbjct: 275 LIPIVGQENVRAQVAAEVDFAHSEQTSETYRPNQDPAGSTIRSQQSSESTNVGTQNEGGV 334

Query: 309 EQNMPHVSD--------------RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
              + +                      P    ++ +K+   NYE++            +
Sbjct: 335 PGALSNQPPVPATAPVTTPPAPPGATASPSRAPSSTRKDATINYEVDKTIQHVRKPVGGI 394

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           +RLS+AVVVN  R+ +  G  + +   +   ++I  +V  A G +  RGDT+ + +  F 
Sbjct: 395 KRLSVAVVVNHRRVVDENGVVSAKPLSEVEKSQITDLVKEAVGFSRERGDTLNVVNSHFT 454

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNIDDAKKGE 473
             +   +  + +     +      +   L+     L +    L   L+R+   +     E
Sbjct: 455 GVEREAAPELPLWKQPEVVELAQQIGKTLLIGGLILYLVLGVLRPSLKRISQPEPPLLAE 514

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
                                         ++         L+        +Q       
Sbjct: 515 ----------------------------PRNDDQDVQPVPALKPAAQPSEYEQRLTLARQ 546

Query: 534 MIEINEERFAKILRKWAR 551
           + +   +  A ++++W  
Sbjct: 547 LAKKEPKLVANVVKQWVA 564


>gi|227329938|ref|ZP_03833962.1| flagellar MS-ring protein [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 574

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 118/555 (21%), Positives = 235/555 (42%), Gaps = 63/555 (11%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
              +   P Y  LY  +   D   I   L++ NI +R ++NG +I +P++ V + R+ LA
Sbjct: 44  LTLWAKGPDYRVLYSNINDRDGGAIVSELTKLNIPYRFAENGGAIMIPAANVYETRLRLA 103

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
             GLP   +  G+EL D+   FG++ F ++I   RALEGE++RTI+++  +  ARVH+ +
Sbjct: 104 QLGLPKGGA-VGFELLDQE-KFGISQFSEQINYQRALEGELSRTIETLGPVQNARVHLAI 161

Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           P    F +    P++SV +              +I ++V+++V  L   +VTV+D TG+L
Sbjct: 162 PKPSLFVREQKAPSSSVTLTLQPGRALDEGQINSIVYMVSSSVAGLPPDNVTVVDQTGRL 221

Query: 217 LT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LT A    R++    L     ++   +  I   +A  +G+ N  + V A+++   ++  +
Sbjct: 222 LTQAGGSGRDLNAAQLKYSNEVEAMYQRRIESIIAPMVGMGNVHAQVTAQIDFSAREQTD 281

Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRS---------- 325
             Y P+   +++   S+   +SE     +   V   + +        P +          
Sbjct: 282 EQYQPNQPPDKAAVRSQQTSQSEQRGGPNVGGVPGALTNQPAPAPTAPIATPPNNANANA 341

Query: 326 --------------------------LENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
                                       +  + +  +NYE++   + T H +  ++RLS 
Sbjct: 342 NNQAGQQNQNNAAGAQANAANANTVIQTSNVRNDATTNYEVDKTILHTKHSSGGVKRLSA 401

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AV+VN        G+       +  + +I  +   A G ++ RGDT+ + +  F+++   
Sbjct: 402 AVIVNYQP-PGEDGKPV--ALTEEQIKQIETVAREAMGFSAERGDTLNVVNTPFMDS--- 455

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
             G+ ++ F    +  F  ++ A  +L+  ++   L    +R        ++        
Sbjct: 456 TDGSGELPFWQKQA-FFDLLMEAGRWLLVLIVAWILWRKLVRPQLQRKAQQQE------- 507

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
                 + A        DN  + + +       R  Q R+N+ +      R+  M E + 
Sbjct: 508 -----AALAAAALSQGADNDVMVNLSSSEVEQQRKSQQRVNAEMQS---NRIREMAENDP 559

Query: 540 ERFAKILRKWARSEI 554
              A ++R+W  +E+
Sbjct: 560 RVVALVIRQWMSTEL 574


>gi|320354317|ref|YP_004195656.1| flagellar M-ring protein FliF [Desulfobulbus propionicus DSM 2032]
 gi|320122819|gb|ADW18365.1| flagellar M-ring protein FliF [Desulfobulbus propionicus DSM 2032]
          Length = 550

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 131/538 (24%), Positives = 239/538 (44%), Gaps = 25/538 (4%)

Query: 21  RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80
           R + LA+V  + + LF        +  Y  LY  L  SD + +   L   NI +++++NG
Sbjct: 30  RKIALAAVTAITLGLFAFIIVQARTADYQLLYGNLAESDASSVVEWLKGQNIPYKLANNG 89

Query: 81  SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140
            +I +P+  V + R+ LA+ GLP      G+E+FDK  SF LT F+Q++   RAL+GE+A
Sbjct: 90  HNILIPAKDVYETRLSLASLGLPQGGG-VGFEIFDK-QSFALTDFVQKVNYSRALQGELA 147

Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAA 198
           RTI S+  +  ARVH+ +P+   F+      TASV+I+            E + HLV+++
Sbjct: 148 RTIASLGPVETARVHLALPEKRLFKDQQKPATASVIIKLAPGKRLSEAQIEGVVHLVSSS 207

Query: 199 VPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255
           +  LD G VTV+D  G +L+      +  N+    L     ++  +E      L   LG 
Sbjct: 208 IEGLDPGQVTVIDQNGNVLSRIGEKGLSGNLSPDMLEFQMQVEQRLEDRAQALLDKSLGA 267

Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV 315
            N    V A L+    +  E  +DP+  V RS +LS++   SE +       V+ N+   
Sbjct: 268 KNAMVRVSATLDFAQTEKTEETFDPEEPVIRSEQLSEEKSGSEIT--GGVPGVQSNLEG- 324

Query: 316 SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS 375
                    +   + + +  +NYEI+     TT     + +LS++V+V    +       
Sbjct: 325 --NTAQTAGATPPSSRSQRTTNYEISKVVSKTTQPVGTISKLSVSVLVADKVVPGKDKEP 382

Query: 376 A-DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSR 434
           A  + + ++ L  +  +V++A GI++ RGD I +TSM FLE+        Q      L  
Sbjct: 383 AKTEPRSETELKTLQTMVASALGIDTARGDKIEVTSMPFLESAEDGG---QEGMAANLLY 439

Query: 435 HFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLM 494
            +   I   + ++G +L+    +  L +  + D  +          +   + +       
Sbjct: 440 QYLPFIRYGLLILGAVLIYLFMIRPLMKTLHRDVTEH-------YKTVEEMEAEQVQAAA 492

Query: 495 PNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
             +  A  +    +   +   ++  ++ +      ++   +E +    A +L+ W   
Sbjct: 493 AREPGAGPAGAGALVGGAAYREAMESAPL--DPLEKIRKGVEQDPVFSAHVLKGWIHE 548


>gi|239817137|ref|YP_002946047.1| flagellar MS-ring protein [Variovorax paradoxus S110]
 gi|239803714|gb|ACS20781.1| flagellar M-ring protein FliF [Variovorax paradoxus S110]
          Length = 560

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 115/537 (21%), Positives = 210/537 (39%), Gaps = 46/537 (8%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
             +  +P Y  LY  +   D   I  +L + N+ ++ ++ G +I V    V + R+ LA+
Sbjct: 46  LLWSRAPDYGVLYTNVTDRDGGAIIASLQQMNVPYKFAEGGGAILVARDRVPEVRLKLAS 105

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
           QGLP      G+EL D    FG ++F +++   R LEGE+AR+++SI  + +AR+H+ +P
Sbjct: 106 QGLPKGGG-VGFELMD-NQKFGTSNFAEQVNYQRGLEGELARSVESIGSVESARIHLALP 163

Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
               F +   +P+ASV++              AI H+V+++VP+LD   VTV+D  G LL
Sbjct: 164 KPSLFVRDQKKPSASVILTLHRGRSIDEGQVSAIVHMVSSSVPDLDAKSVTVVDQRGNLL 223

Query: 218 TANEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           +A     R +    L   Q I+      I   L   +G  N R+ V AE++    +  E 
Sbjct: 224 SAANAGARGLDVSQLKYAQEIEQGYIRRIEAILQPLVGASNVRAQVAAEIDFSVVERTEE 283

Query: 277 VYDPDSKVERSIRLSKDAQRS---ETSQPESAVTVEQNMPHVSDRKVPLPRSLE------ 327
            Y P+     +   S+ +  S     + P        N P  +                 
Sbjct: 284 SYKPNQDPRAAAVRSQQSSESMQQGATPPGGVPGALSNQPPQTPSAPITAPPNAAAAAPK 343

Query: 328 ------------NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS 375
                        + +K+  +NYE++            ++RLS+AVVVN     +  G+ 
Sbjct: 344 AAATATAASTAPGSSRKDTTTNYELDRSIRHVQQGAGGVKRLSVAVVVNHRDTADSAGKP 403

Query: 376 ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435
             +    + + +I  +V  A G +  RGD++ + +  F            + F    + +
Sbjct: 404 GQRALTPAEIEQIRNLVKEAMGFSQERGDSLNVVNSAFAREGGDAEAGPALPFWRDPA-N 462

Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495
               ++   +L+   L  F     LR L     A       ++  + P  +    T    
Sbjct: 463 LGLAMSIAQYLLMAGLALFAWFAVLRPLLRKHLAPPAAAVPEAAPAAPGAADDDGTAAQN 522

Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
           N  +      +    ++                       + +    A +++ W  S
Sbjct: 523 NARLREIERQKADLDYAHQT-------------------ADQDPRLVATLIKHWMNS 560


>gi|183598654|ref|ZP_02960147.1| hypothetical protein PROSTU_02060 [Providencia stuartii ATCC 25827]
 gi|188020839|gb|EDU58879.1| hypothetical protein PROSTU_02060 [Providencia stuartii ATCC 25827]
          Length = 562

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 123/529 (23%), Positives = 241/529 (45%), Gaps = 37/529 (6%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           ++ SP Y  L   L   D   I   L++ N+ ++I+DNGS+I VP+  V + R+ LA  G
Sbjct: 47  WLRSPDYRVLLSNLSAKDGGDIVSQLTQMNVPYQIADNGSAILVPAEKVHELRLKLAQSG 106

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP    N+G+EL DK   FG++ F +++   RALEGE++RTI+S+S +  ARVH+ +P  
Sbjct: 107 LPKGG-NTGFELLDKEQ-FGISQFSEQVNYQRALEGELSRTIESLSPVQNARVHLAIPKP 164

Query: 162 GSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    PTASV +  +   +       AI H+V+++V  L   +VT++D TG+LLT 
Sbjct: 165 TLFVREQKLPTASVTVGLLPGRMLDEGQITAIVHMVSSSVSGLTAANVTIVDQTGRLLTN 224

Query: 220 NE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
           N+  +++     + + + ++  ++  I   ++  +G  N  + V A+++    +     Y
Sbjct: 225 NDNSQQSANNAQIKMTKEMESHLKQRIEDIISPLVGRANVHAQVTAQMDFSKVEQTSEEY 284

Query: 279 DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT--------- 329
            P+     +   S+   +S  +       V   + +        P S +N          
Sbjct: 285 KPNQTPNSAAVRSRQNSQSSQNNTSGVGGVPGALSNQPPSAPSAPISTDNKGANSAQNSP 344

Query: 330 -------DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382
                   + +E +NYE++ K   T      ++RLS+AV++N        G    +    
Sbjct: 345 SNNGSSLSQSDETTNYEVDRKISHTQRQIGVIDRLSVAVIINYLPQDGEDGTQQMKPLSP 404

Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINA 442
             + +I  +   A G +S RGD+++IT+  F  + +      Q S ++   +  A V++ 
Sbjct: 405 EMMQQIESLTREAMGYSSTRGDSLSITNSLFTNDTVVEE---QPSMLEN-PQFIAQVLDY 460

Query: 443 LVFLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501
              ++  ++   +    ++         ++ +   +  ++  P +  V    +  D    
Sbjct: 461 GKIILIAIIAWLMWRFGVKPQWVKYRQTQQAQSAAEVFVAAQPKTPLVVDEEINED---- 516

Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
                D  +  R  + R+++ +  Q   R+  M E + +  A ++R+W 
Sbjct: 517 ----MDEQTRRRLTRQRVSAEIQSQ---RIREMAEKDPQVVAMVIRQWL 558


>gi|50120659|ref|YP_049826.1| flagellar MS-ring protein [Pectobacterium atrosepticum SCRI1043]
 gi|49611185|emb|CAG74631.1| flagellar M-ring protein [Pectobacterium atrosepticum SCRI1043]
          Length = 574

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 117/555 (21%), Positives = 235/555 (42%), Gaps = 63/555 (11%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
              +   P Y  LY  +   D   I   L++ NI +R +++G +I +P++ V + R+ LA
Sbjct: 44  LTLWAKGPDYRVLYSNINDRDGGAIVSELTKLNIPYRFAESGGAIMIPAANVYETRLRLA 103

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
             GLP   +  G+EL D+   FG++ F ++I   RALEGE++RTI+++  +  ARVH+ +
Sbjct: 104 QLGLPKGGA-VGFELLDQE-KFGISQFSEQINYQRALEGELSRTIETLGPVQNARVHLAI 161

Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           P    F +    P++SV +              +I ++V+++V  L   +VTV+D TG+L
Sbjct: 162 PKPSLFVREQKSPSSSVTLTLQPGRALDEGQINSIVYMVSSSVAGLPPDNVTVVDQTGRL 221

Query: 217 LT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LT A    R++    L     ++   +  I   +A  +G+ N  + V A+++   ++  +
Sbjct: 222 LTQAGGSGRDLNAAQLKYSNEVEAMYQRRIESIIAPMVGMGNVHAQVTAQIDFSAREQTD 281

Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRS---------- 325
             Y P+   +++   S+   +SE     +   V   + +        P +          
Sbjct: 282 EQYQPNQPPDKAAVRSQQTSQSEQKGGPNVGGVPGALTNQPAPAPTAPIATPPNNANANA 341

Query: 326 --------------------------LENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
                                       +  + +  +NYE++   + T H    ++RLS 
Sbjct: 342 NNQAGQQNQNNAAGAQANAANTNTTIQTSNVRNDATTNYEVDKTILHTKHSTGGVKRLSA 401

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           A++VN        G+       +  + +I  +   A G ++ RGDT+ + +  F+++   
Sbjct: 402 AIIVNYQP-PGEDGKPV--ALTEDQIKQIETVAREAMGFSAERGDTLNVVNTPFMDS--- 455

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
             G+ ++ F    +  F  ++ A  +L+  ++   L    +R        ++      + 
Sbjct: 456 TDGSGELPFWQKQA-FFDLLMEAGRWLLVLIVAWILWRKLVRPQLQKKAQQQEAALAAAT 514

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
           LS               DN  + + +       R  Q R+N+ +      R+  M E + 
Sbjct: 515 LS------------QGTDNDVMVNLSSSEVEQQRKSQQRVNAEMQS---NRIREMAENDP 559

Query: 540 ERFAKILRKWARSEI 554
              A ++R+W  +E+
Sbjct: 560 RVVALVIRQWMSTEL 574


>gi|295097226|emb|CBK86316.1| flagellar basal-body M-ring protein/flagellar hook-basal body
           protein (fliF) [Enterobacter cloacae subsp. cloacae NCTC
           9394]
          Length = 511

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 138/548 (25%), Positives = 233/548 (42%), Gaps = 68/548 (12%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
            F+   P Y  L+  +   D   I   LS+ N+ +RI   G +I VP   V + R+ LA 
Sbjct: 1   MFWAKEPGYRVLFSNISDEDGGAIVAQLSQMNVPYRIDAPGGAILVPEGQVHEVRMKLAQ 60

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
           QGLP   S  G+EL DK   FG++ F +++   RALEGE+ARTI+++  I +ARVH+  P
Sbjct: 61  QGLPKGGS-VGFELLDKE-KFGISQFSEQVNYQRALEGELARTIENLGPIRSARVHLATP 118

Query: 160 DMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
               F +   +PTASV +  I        +  AI HL+++AV  L   +VT++D  G+LL
Sbjct: 119 KQTMFVREQKQPTASVTVNLIQGRTLDEGQVIAITHLISSAVTGLTAENVTIVDQRGELL 178

Query: 218 TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
           T + + R +    L     I+ + +  I + LA  +G  N R+ V A+++   Q+  +  
Sbjct: 179 TQSGL-RGLQTSQLKYTSEIESDYQQRIQRILAPLVGSKNIRAQVTAQIDFTQQEQTQEQ 237

Query: 278 Y----DPDSKVERSIRLSKDAQRSE----------TSQPESAVTVEQNMP------HVSD 317
           Y    DP   V RS + S+  Q +           T+QP +  T     P        S 
Sbjct: 238 YQPNADPQKMVIRSRQTSQSEQGNGRGNGGVPGALTNQPPAPATAPLTQPLDKPAAQTST 297

Query: 318 RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSAD 377
                 RS    +  +E +N+E++       +   +++RLS+AVV+N             
Sbjct: 298 AGTGNDRSQPYNNHNDETTNFEVDRTLTHIKNAMGRIDRLSVAVVINHLPQG---AEGKP 354

Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437
               ++ L  IN +V  A G  + RGD++ I +  F  N +           D   +   
Sbjct: 355 GPLSEAELNRINALVKEAVGYTASRGDSVNILNSPF--NGVEEEELPPFWKQDKFYQLMM 412

Query: 438 TVINALVFLVGTLLVTFLGLHA---------LRRLHNIDDAKKGEVGGKSILSPPPISSA 488
            +   LV  +   ++    +H          LRR+    +A++ E+  +   S       
Sbjct: 413 AIARYLVIAIIAWVMWRKLVHPAWIRHQETSLRRMEMEKEARQEELAARKKASEKDARDR 472

Query: 489 VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRK 548
                                      Q R+++ ++ Q   +L  + E      A ++R+
Sbjct: 473 A--------------------------QQRVDTELNSQ---QLRELAEQEPRVIALVIRQ 503

Query: 549 WARSEIED 556
           W   E++ 
Sbjct: 504 WMNQELKS 511


>gi|227112541|ref|ZP_03826197.1| flagellar MS-ring protein [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 574

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 118/555 (21%), Positives = 236/555 (42%), Gaps = 63/555 (11%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
              +   P Y  LY  +   D   I   L++ NI +R ++NG +I +P++ V + R+ LA
Sbjct: 44  LTLWAKGPDYRVLYSNINDRDGGAIVGELTKLNIPYRFAENGGAIMIPAANVYETRLRLA 103

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
             GLP   +  G+EL D+   FG++ F ++I   RALEGE++RTI+++  +  ARVH+ +
Sbjct: 104 QLGLPKGGA-VGFELLDQE-KFGISQFSEQINYQRALEGELSRTIETLGPVQNARVHLAI 161

Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           P    F +    P++SV +              +I ++V+++V  L   +VTV+D TG+L
Sbjct: 162 PKPSLFVREQKAPSSSVTLTLQPGRALDEGQINSIVYMVSSSVAGLPPDNVTVVDQTGRL 221

Query: 217 LT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LT A    R++    L     ++   +  I   +A  +G+ N  + V A+++   ++  +
Sbjct: 222 LTQAGGSGRDLNAAQLKYSNEVEAMYQRRIESIIAPMVGMGNVHAQVTAQIDFSAREQTD 281

Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE-------- 327
             Y P+   +++   S+   +SE     +   V   + +        P + +        
Sbjct: 282 EQYQPNQPPDKAAVRSQQTSQSEQRGGPNVGGVPGALTNQPAPAPTAPIATQPNNANANA 341

Query: 328 ----------------------------NTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
                                       +  + +  +NYE++   + T H    ++RLS 
Sbjct: 342 NNQAGQQNQNNAAGAQANAANANTVIQTSNVRNDATTNYEVDKTILHTKHSTGGVKRLSA 401

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AV+VN        G+       +  + +I  +   A G ++ RGDT+ + +  F+++   
Sbjct: 402 AVIVNYQP-PGEDGKPV--ALTEEQIKQIETVAREAMGFSAERGDTLNVVNTPFMDS--- 455

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
             G+ ++ F    +  F  ++ A  +L+  ++   L    +R        ++      + 
Sbjct: 456 TDGSGELPFWQKQA-FFDLLMEAGRWLLVLIVAWILWRKLVRPQLQRKTQQQEAALAAAA 514

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
           LS               D+  + + +       R  Q R+N+ +      R+  M E + 
Sbjct: 515 LS------------QGADSDVMVNLSSSEVEQQRKSQQRVNAEMQS---NRIREMAENDP 559

Query: 540 ERFAKILRKWARSEI 554
              A ++R+W  +E+
Sbjct: 560 RVVALVIRQWMSTEL 574


>gi|253990094|ref|YP_003041450.1| flagellar MS-ring protein [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253781544|emb|CAQ84707.1| flagellar basal-body m-ring protein [Photorhabdus asymbiotica]
          Length = 567

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 139/583 (23%), Positives = 248/583 (42%), Gaps = 56/583 (9%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           I +Q   F      +     + L       I + +A   ++ SP Y  LY  L   D   
Sbjct: 8   IENQTNGFSTIINRIKADPKVPLLVAGSAAIAIVIALFLWLRSPDYRVLYSNLSDKDGGE 67

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L++ NI +R ++NGS+I +P+  V + R+ LA QGLP   + +G+EL DK   FG+
Sbjct: 68  IVTQLTQLNIPYRFAENGSAIMIPAGQVHETRLRLAQQGLPKGGA-AGFELLDKE-KFGI 125

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           + F +++   RALEGE++RTI+S+  +  ARVH+ +P    F +    P+ASV +  +  
Sbjct: 126 SQFSEQVNYQRALEGELSRTIESLGPVQNARVHLALPKPSLFVREQKSPSASVTVGLLQG 185

Query: 183 SVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQAIQH 239
                    AI H+V+++V  L   +VT++D  G+LLT  +   R++    L  +Q +++
Sbjct: 186 RTLDEGQINAIVHMVSSSVAGLPPSNVTIVDQAGRLLTQADATGRDLNTSQLKYIQEVEN 245

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK----VERSIRLSKDAQ 295
             +  I   L   +G  N  + V A+++   ++     Y P+        RS +LS+  Q
Sbjct: 246 RFQQRIEAILTPVVGRGNVHAQVTAQVDFSRREETAEEYKPNQPPNQAAVRSKQLSESEQ 305

Query: 296 RSE----------TSQPESAVTVEQNMPHV-----SDRKVPLPRSLENTDKK-------- 332
                        ++QP    +     P+      SD+      S  N++++        
Sbjct: 306 SGGPLVGGIPGALSNQPSPPPSAPIEKPNTKESNKSDKSDKKTSSSGNSNERMVNNNRNN 365

Query: 333 --EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINK 390
             +E +NYE++            +ERLS+AVVVN   +    G    Q      LA+I  
Sbjct: 366 RRDETTNYEVDRTIRHVQQQAGGVERLSVAVVVNYVTVEGKNGPET-QALTPEQLAKIEA 424

Query: 391 IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL 450
           +   A G +  RGD++ + +  F E++  N   + V    IL            +L+  L
Sbjct: 425 LTREAMGFSKERGDSLNVVNTPFTESK-ENIEVIPVWQNPILLEKAFDF---GRYLLLIL 480

Query: 451 LVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFS 510
           +   L    +        A +              + +              S+  D  +
Sbjct: 481 VAWLLWRKMVVPQLAKKRAAEKAALEAQKAQKKQATES--------------SAEMDERT 526

Query: 511 HSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             R  + R+++ +  Q   R+  + E +    A ++R+W  +E
Sbjct: 527 RQRLTRQRVSAEIQSQ---RIRELAEKDPRVVALVIRQWMSNE 566


>gi|92114078|ref|YP_574006.1| flagellar M-ring protein FliF [Chromohalobacter salexigens DSM
           3043]
 gi|91797168|gb|ABE59307.1| flagellar M-ring protein FliF [Chromohalobacter salexigens DSM
           3043]
          Length = 594

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 127/550 (23%), Positives = 211/550 (38%), Gaps = 47/550 (8%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
              +  +P Y  LY  L  +D  +I   L    + +  S+NG ++ VP+  V K R+ LA
Sbjct: 54  LLMWARAPEYRVLYSTLTDADGGKIVSELDSMGVPYEFSENGQALLVPADQVNKLRLQLA 113

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
            QGLP +S   GYEL D+  SFG++ F + +   RALEGE+ARTI+ +  +  ARVH+ M
Sbjct: 114 EQGLPEASG-VGYELMDE-QSFGISQFTEHVNYQRALEGELARTIEDLGPVSKARVHLAM 171

Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
                F +     +ASVM+      V      +AI H+V+++V  L + DV V+D TG+L
Sbjct: 172 AKPSVFVRESEPASASVMLDLQRGRVLGEGQVQAIMHMVSSSVSELAISDVAVVDQTGRL 231

Query: 217 LT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           L+ A++    + G  L  V  ++      I   LA  LG  N ++ V A+L+   ++   
Sbjct: 232 LSPASDGNEALNGSQLDYVARVERNYAERIESILAPILGARNVKAEVSAQLDFSEREGTS 291

Query: 276 IVYDPDSKVERSIRLSKDAQRSET--------------SQPESAVTVEQNMPHVSDRKVP 321
             Y P+     +   S+    S +              +QP        N P   D    
Sbjct: 292 ETYGPNQPPNEAAVRSEQTSLSYSGDGDLAMGIPGALSNQPPGTAASPINAPQEDDAGDG 351

Query: 322 LPRSLE-------------------NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
                +                       ++   NYE++       H+   +ERL+ A+V
Sbjct: 352 EGEDAQDDGNQDEDGEATTQENATLGRTSRDNTINYEVDRTVEHIQHETGTIERLNAAIV 411

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           VN     +  G        D  +A I  +   A G +  RGD + + +  F +       
Sbjct: 412 VNYRDGVDEDGNPTRVPLSDQEIANIRSLAQQAIGFSQARGDQLEVVNSPFDDTS--EQR 469

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482
                +   L    AT +    +L+  L+  FL    LR L      +       +  + 
Sbjct: 470 PEPAWWESPLLWSLATTLG--QYLLIGLVALFLWFKVLRPLIQRQTERPAFTPATAAPAG 527

Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542
               +            A +              +        Q+   +  + + +    
Sbjct: 528 AAGGAEAYAATAAEGTGAEEEPPAPPQKRRERRSASYE-----QNLRDVREIAQEDPRLV 582

Query: 543 AKILRKWARS 552
           A I+R W  S
Sbjct: 583 AMIVRGWMSS 592


>gi|187478210|ref|YP_786234.1| flagellar MS-ring protein [Bordetella avium 197N]
 gi|115422796|emb|CAJ49324.1| flagellar M-ring protein [Bordetella avium 197N]
          Length = 544

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 123/536 (22%), Positives = 221/536 (41%), Gaps = 61/536 (11%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +   P Y  L+  L+  D   I  AL++ N+ +R SDNG +I VP + V   R+ LA QG
Sbjct: 46  WSREPDYKVLFSNLDDRDGGAIVTALTQMNVPYRFSDNGGAILVPGNRVYDLRMQLAGQG 105

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG + F +++   RALEGE+AR+I+++  +  ARVH+ +P  
Sbjct: 106 LPRGGS-VGFELMDNA-RFGASQFAEQVNYQRALEGELARSIEAMHTVQHARVHLALPRQ 163

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    PT SV++          A+  AI  LVA++VP+L   +V+++D  G+LL+A
Sbjct: 164 SLFVRDRQPPTGSVLLTLYPGRSLAEAQVSAIAWLVASSVPDLSADNVSIVDQNGRLLSA 223

Query: 220 NEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
              E R +    +   +  +      I   L   +G  N  +    E++   ++    +Y
Sbjct: 224 PAGEGRGLDADQMRFAREYEQRTVERILTILNPLVGPGNVHAQASVEVDFARREETSEIY 283

Query: 279 DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSL------------ 326
            P+ +  ++   S+    S  +    A  V   + +        P +             
Sbjct: 284 RPNQEPGQAAVRSQQTSDSRQTNASPAAGVPGALSNQPPAATQAPLTNPPAPAQPQAQPA 343

Query: 327 --------ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ 378
                      ++++   NYE++           +++RLS+AVVVN     +       Q
Sbjct: 344 APQQAAQISGNERRDATINYEVDRTISHVKQPVGQVKRLSVAVVVNHLPNKDGD----PQ 399

Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFAT 438
                 L+++  +V  A G +  RGD++ + +  F +       TV +     L    AT
Sbjct: 400 ALPPEELSKLTTLVREAMGYSEARGDSLNLVNSQFNDA----PPTVPLWRDPDL---IAT 452

Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498
           +  AL ++ G LL+ F     +R +                       S      +  + 
Sbjct: 453 IKTALGWVFG-LLIAFWAYRRIRPIV----------------------SEYLYPQIDPEA 489

Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
           +A + +  +  + +      +N Y  + +  R   M   +    A +LR W   + 
Sbjct: 490 VAAERAEIEREAVAAARAKEVNRY--EDNLQRARDMATKDPRAVAMVLRAWMTKDE 543


>gi|254496581|ref|ZP_05109449.1| flagellar MS-ring protein [Legionella drancourtii LLAP12]
 gi|254354205|gb|EET12872.1| flagellar MS-ring protein [Legionella drancourtii LLAP12]
          Length = 547

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 130/573 (22%), Positives = 247/573 (43%), Gaps = 52/573 (9%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           MA+ D          SL   R + L   +   + + +A   +   P+Y  LY ++   D 
Sbjct: 1   MALADNASMVAAKFASLSIPRQIGLLIGLAASVAVGLAVVLWSRDPNYVPLYTQMNTRDA 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             +  AL    I+F+I +N S+I +PS+ +   R+ LAA+GLP     S  ELF   N+F
Sbjct: 61  AEVVSALERNGIEFKIDNNNSTILIPSANLQSTRLKLAAEGLPRDPVAS-EELFSSGNAF 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
             + FM+     +ALE E+ARTI   + I AARVH+ +P   +F +   +P+ASV I   
Sbjct: 120 NSSQFMENARYKQALEAELARTISKFNDIKAARVHLAIPRESAFVRDIHQPSASVFIDVY 179

Query: 181 NPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS--LSIVQA 236
           +    K  +  AI +LVA+++PNL    VTV+D  G+LL     +         L   Q 
Sbjct: 180 SGLELKKHTVSAIVNLVASSIPNLSASRVTVVDQDGQLLNEGSGQTLFTDTERFLDYRQN 239

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           ++ +    I   L   LG    R+ V A+++  + +  + +++P+    RS +  ++   
Sbjct: 240 LEQQYAQKIQDILTPLLGYGRVRAKVSADIDFTSYEQTQEMFNPELPSLRSEQTMQEKHN 299

Query: 297 SETSQPESAVTVEQNMPHVSDR------------------KVPLPRSLENTDKKEEQSNY 338
           +  S          N P  +                    +     +  +  + +   N+
Sbjct: 300 AA-SDAIGVPGTLSNTPQPNPSLNNKNPAAPNAQQQQQPAQSSSDANQSSDTRTQSTKNF 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA-DQGKIDSYLAEINKIVSAATG 397
           E++     T +    ++RLS+AV+V+   + +   ++   +      + +I  +V+ A G
Sbjct: 359 ELDKTISHTKNQPGTIKRLSVAVLVDNPAIMDTKTKTMIKKALTAKEIDQIKLLVADAIG 418

Query: 398 INSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457
           +NS+RGD++ + + DF++     +   +  F       F +++  +    G L V  +  
Sbjct: 419 LNSQRGDSLNVINSDFVKPDPI-APIPEERFWQ--KDIFWSIVKQVA---GALFVLAMIF 472

Query: 458 HALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS 517
             LR +     + KG   G  +      +      L  +  IA+  +N        + +S
Sbjct: 473 GVLRPMLKTLASNKGVGEGAYLED----TDEPQGDLTYDGTIAIKDAN--------DYES 520

Query: 518 RINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
           ++N          L  +++   +R A++++ W 
Sbjct: 521 QLNL---------LRQVVDKEPKRVAQVVKTWV 544


>gi|313200543|ref|YP_004039201.1| flagellar m-ring protein flif [Methylovorus sp. MP688]
 gi|312439859|gb|ADQ83965.1| flagellar M-ring protein FliF [Methylovorus sp. MP688]
          Length = 580

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 128/548 (23%), Positives = 227/548 (41%), Gaps = 50/548 (9%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
             +   P Y  L+      D   I  +L + NI ++ S++G++I VP+S V + R+ LAA
Sbjct: 49  WLWSQQPEYRVLFSNYADKDGGAIVASLEQMNIPYKFSESGTAILVPASQVHQVRLKLAA 108

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
           QGLP    N G+EL +    FG++ F++++   R LEGE+ R+IQ+IS +  AR+H+ +P
Sbjct: 109 QGLPKGG-NIGFELLE-NQKFGVSQFVEQVNFQRGLEGELERSIQTISAVEVARIHLAIP 166

Query: 160 DMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
               F +   +PTASV++      +    +  AI HLVA++VP L + +VTV+D  G LL
Sbjct: 167 KPSVFVRDQQKPTASVLLNLRPGRMLDQQQVSAIVHLVASSVPELPIANVTVVDQNGNLL 226

Query: 218 TANE---MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           +  +      N+    L  +  +Q  I   +   +A  +G  N  +   AE++  TQ+  
Sbjct: 227 SDTDKKAGRNNLDPTQLKYIDELQQNIVRRVESIIAPMVGAKNVHAEASAEVDFSTQEQA 286

Query: 275 EIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPHVS-----DRKVPLPRSL 326
              Y P+   +     S+ +  S+++ P     V     N P        +  VP     
Sbjct: 287 AETYRPNQAPDAMSVRSQQSNESQSTSPAGVGGVPGALSNQPPAPATAPLNTAVPANAGA 346

Query: 327 EN---------------------TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365
                                    +K   +NYE++            ++RL++AVVVN 
Sbjct: 347 PGAGTPANAAAANAANATPAVPVNTQKNVTTNYELDKTIRYVQQPMGGVKRLTVAVVVNH 406

Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425
            ++ +  G+  ++   D+   EI+ +   A G N  RGD++T+ +  F  +Q+     + 
Sbjct: 407 KQVVDKNGKVTNRPLTDAEKTEISDLAKQAMGFNQERGDSLTVVNSSFAGDQIEAIPDLP 466

Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485
           +        +       L    G LLV FL    L +       K  E            
Sbjct: 467 LWKQP---ENIEMAKEWLKMAAG-LLVIFLLYRKLMKPMMQKLVKSDEKEALPAPGDDDA 522

Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545
           +    TG                  +   +  ++ +   +Q+      + + N +  A +
Sbjct: 523 AVVTLTGAAEGAE----------GENMVGVPRKLAAKGYEQNLEAAKQLAKENPKLVASL 572

Query: 546 LRKWARSE 553
           +  W   E
Sbjct: 573 VTNWVSKE 580


>gi|124265758|ref|YP_001019762.1| flagellar biosynthesis lipoprotein [Methylibium petroleiphilum PM1]
 gi|124258533|gb|ABM93527.1| flagellar biosynthesis lipoprotein [Methylibium petroleiphilum PM1]
          Length = 567

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 126/572 (22%), Positives = 232/572 (40%), Gaps = 51/572 (8%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
           F     +L   R   L   +   + +  A   + +  +Y  LY  L   D   I   LS 
Sbjct: 21  FGSRLAALPAGRKFTLGIGLAALVGIAFAMSMWSSQGNYKVLYAGLSDKDGGAILAQLST 80

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
            N+ ++ +D G++I VP+  V   R+ LA+ GLP   S  G+EL D    FG T F + +
Sbjct: 81  MNVPYKHADGGAAILVPADKVHDVRLKLASAGLPK-GSIVGFELMDNA-KFGQTQFQERL 138

Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--S 187
           T  R LEGE+ R+I +++ + +ARVH+ +P+   F +   +P+ASV++            
Sbjct: 139 TFQRGLEGELTRSIGALAAVQSARVHLALPNQNGFFREQQKPSASVLLTLHPGRTLDRTQ 198

Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMN 244
              I HLV+++VP +D   VTVLD+TG L++      +   +  + L  V  I+      
Sbjct: 199 IAGIVHLVSSSVPEMDPKAVTVLDATGALISGAGDAGSAGGLDAQQLQYVGQIEGNYTKR 258

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV----------ERSIRLSKDA 294
           +   L   LG DN R+ V AE++    +     Y P+  +           RS ++S +A
Sbjct: 259 VFDILEPVLGRDNLRAQVTAEVDFSQTESTSEAYAPNQGLGADGKPAAATLRSHQVS-EA 317

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE-----------NTDKKEEQSNYEINTK 343
               ++QP        N P V         +                ++E  +NYE++  
Sbjct: 318 SGGGSAQPAGVPGAASNQPPVPATAPVNGSAQPLQTAQSGGGSGGNSRREATTNYEVDKT 377

Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403
              T +    ++RL+ AVV+N   +T+  G+++        + ++  +V    G N+ RG
Sbjct: 378 VRVTRNATGTIKRLNAAVVLNHRSVTDAKGKTSTTPISAEEMEKLTALVKETIGFNADRG 437

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
           D++ + +  F   +      + +           T+       +  +++ F  +      
Sbjct: 438 DSVKLINAPFKVEKPPVEEALPLWKQPETQDLLRTLAVPGALTLLAMIIVFGAVRP---- 493

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                         ++ +  P         + +D  AL S +    +    L++ +    
Sbjct: 494 --------------ALKAAQPAQPQRQLDAVVDDVPALPSPSSAQAAALPALEAPVVDTR 539

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
             Q+      + + N    A I+R W+  E  
Sbjct: 540 LNQA----RALAKENPAAMANIVRGWSAKEAA 567


>gi|46578729|ref|YP_009537.1| flagellar M-ring protein FliF [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46448141|gb|AAS94796.1| flagellar M-ring protein FliF [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311232601|gb|ADP85455.1| flagellar M-ring protein FliF [Desulfovibrio vulgaris RCH1]
          Length = 538

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 138/560 (24%), Positives = 247/560 (44%), Gaps = 38/560 (6%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           D+   F+   +   R  I+ LA   LV + +F     ++N P Y  LY  L   D NR+ 
Sbjct: 10  DKARAFWSRISMSQRVFIVGLA---LVTVGIFFTLILWINRPDYRVLYSNLAGEDANRVV 66

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L    + +++ ++G ++ VP+  +   RI +A +G        G+E+FD +   G T 
Sbjct: 67  KLLQANKVPYKLENDGGTVLVPADKLYDLRIKVAGEG-NLVGQGIGFEIFDDL-KVGQTD 124

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP-- 182
           F+Q+I   RAL+GE+ RTI    G+  ARVH+V+P    F +   +P+ASV+++      
Sbjct: 125 FVQKINYQRALQGELIRTISEFPGVETARVHLVIPHRSLFIEEQQKPSASVVVKLREGKK 184

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQAIQH 239
              +  +AI +LV  AV  +D   V+V D++GK+L   T ++  + +    L     +Q 
Sbjct: 185 MEAQDVQAIVNLVVMAVEGMDRNRVSVADTSGKILYYPTEDDSLQGLTTTQLEYKMRLQQ 244

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
            +E  I + L   +G     + V A+++   + IR  +YDP+  V RS + S+++ R   
Sbjct: 245 NLERRIEELLYPVIGPGKVIAKVNADVDFSQRTIRRELYDPEKTVVRSEQRSEESTRGRA 304

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           +    A        +     +    S +   ++   +N+EIN +      +   L RLS+
Sbjct: 305 NLEAGAPDA-----NFRGDGISGSASTQEGTRETRTTNFEINKEEQNIVANVGDLSRLSV 359

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AV+V+        G      +    +  I ++VS+A G +  RGDT+ + S+ F    L 
Sbjct: 360 AVIVDGTYEKAADGTYTFVPRNAEEMQRIRQLVSSAVGYDRARGDTVEVNSISFGGPDLP 419

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
              ++   F+D   R    ++NAL+  +  LLV    + AL R       +   + G   
Sbjct: 420 QEASLPQLFLDYALRLGKPLLNALLVFLFLLLVVRPVVMALIR----PKVEGEMIEGLEG 475

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
           L       A+  G    D +      +DI +H+                     + E N 
Sbjct: 476 LPAGEERLALIEGDEEVDALDALRKIEDIKAHAM-------------------QLAEQNM 516

Query: 540 ERFAKILRKWARSEIEDRYT 559
           ++   I+R W +++   +  
Sbjct: 517 DQAVGIIRSWLKNDEGTKAG 536


>gi|253998468|ref|YP_003050531.1| flagellar M-ring protein FliF [Methylovorus sp. SIP3-4]
 gi|253985147|gb|ACT50004.1| flagellar M-ring protein FliF [Methylovorus sp. SIP3-4]
          Length = 576

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 128/548 (23%), Positives = 226/548 (41%), Gaps = 50/548 (9%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
             +   P Y  L+      D   I  +L + NI ++ S++G++I VP+S V + R+ LAA
Sbjct: 45  WLWSQQPEYRVLFSNYADKDGGAIVASLEQMNIPYKFSESGTAILVPASQVHQVRLKLAA 104

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
           QGLP    N G+EL +    FG++ F++++   R LEGE+ R+IQ+IS +  AR+H+ +P
Sbjct: 105 QGLPKGG-NIGFELLE-NQKFGVSQFVEQVNFQRGLEGELERSIQTISAVEVARIHLAIP 162

Query: 160 DMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
               F +   +PTASV++      +    +  AI HLVA++VP L + +VTV+D  G LL
Sbjct: 163 KPSVFVRDQQKPTASVLLNLRPGRMLDQQQVSAIVHLVASSVPELPIANVTVVDQNGNLL 222

Query: 218 TANE---MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           +  +      N+    L  +  +Q  I   +   +A  +G  N  +   AE++  TQ+  
Sbjct: 223 SDTDKKAGRNNLDPTQLKYIDELQQNIVRRVESIIAPMVGAKNVHAEASAEVDFSTQEQA 282

Query: 275 EIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPHVS-----DRKVPLPRSL 326
              Y P+   +     S+ +  S+++ P     V     N P        +  VP     
Sbjct: 283 AETYRPNQAPDAMSVRSQQSNESQSTSPAGVGGVPGALSNQPPAPATAPLNTAVPANAGA 342

Query: 327 EN---------------------TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365
                                    +K   +NYE++            ++RL++AVVVN 
Sbjct: 343 PGAGTPANAAAANAANATPAVPVNTQKNVTTNYELDKTIRYVQQPMGGVKRLTVAVVVNH 402

Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425
            ++ +  G+  ++   D+   EI+ +   A G N  RGD++T+ +  F   Q+     + 
Sbjct: 403 KQVVDKNGKVTNRPLTDAEKTEISDLAKQAMGFNQERGDSLTVVNSSFAGEQIEAIPDLP 462

Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485
           +        +       L    G LLV FL    L +       K  E            
Sbjct: 463 LWKQP---ENIEMAKEWLKMAAG-LLVIFLLYRKLMKPMMQKLVKSDEKEALPAPGDDDA 518

Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545
           +    TG                  +   +  ++ +   +Q+      + + N +  A +
Sbjct: 519 AVVTLTGAAEGAE----------GENMVGVPRKLAAKGYEQNLEAAKQLAKENPKLVASL 568

Query: 546 LRKWARSE 553
           +  W   E
Sbjct: 569 VTNWVSKE 576


>gi|94987299|ref|YP_595232.1| flagellar biosynthesis/type III secretory pathway lipoprotein
           [Lawsonia intracellularis PHE/MN1-00]
 gi|94731548|emb|CAJ54911.1| Flagellar biosynthesis/type III secretory pathway lipoprotein
           [Lawsonia intracellularis PHE/MN1-00]
          Length = 554

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 139/560 (24%), Positives = 248/560 (44%), Gaps = 21/560 (3%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            I+ ++ +F+ +      T+ L +    +   ++F+   F++N   Y  LY  L   D N
Sbjct: 7   QIIARITEFWNNSN---LTQKLFIGGSAVFVTLIFIGLMFWINRTDYKVLYSNLGPEDAN 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L    + ++++DNG +I VP+S V   RI +A +G     S  G+E+FD VN  G
Sbjct: 64  HIIKTLQADKVSYQLADNGKTILVPASSVYDLRIKIAGEG-GMVGSGIGFEIFDAVN-VG 121

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
            T F+Q I   RAL+GE++RTI     + +ARVH+V+P    F +   +P+ASV+++  N
Sbjct: 122 QTDFVQRINYQRALQGELSRTISEFPNVESARVHLVIPQRSLFIEEQQKPSASVVLKLKN 181

Query: 182 PS---VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQA 236
           PS     K  + + +++  AV  LD   V++ DS GK L     +    +          
Sbjct: 182 PSRKMDQKEVQGMVNMLVMAVEGLDKEHVSITDSLGKPLYFPNEDNLAGLSVTQREYKLK 241

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           ++  +E  I++ L   +G     + V  +L+ + + IR  +YDP+S V RS + S++  R
Sbjct: 242 VEQGLERRIDELLIPLMGQGKVIAKVNVDLDFNQKTIRREIYDPNSSVIRSEQRSEETNR 301

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
            +++    +  V     +          S +   ++   +NYEIN +      +  ++ R
Sbjct: 302 GQSNLESGSPDV-----NFRGDGPNGAMSTQEGTRETRTTNYEINREEQNIVGEVGQINR 356

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           +++AVVV+   + E  G      +    L  I  +VS A G +  RGDTI ++S+ F E 
Sbjct: 357 MTVAVVVDGTYVKEPNGEYKFVPRSQEELNRIRLLVSHAIGFDRARGDTIEVSSIPFDEA 416

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476
            L               R    ++NAL+  +  +LV    + AL R       K      
Sbjct: 417 DLPIEPPAAEVIAKYAERLGKPLLNALLAFLFLMLVVRPVILALIR------PKVESEAI 470

Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536
              L   P +          +  A  ++ + +   S   +   +    +      L + E
Sbjct: 471 VEGLEGLPSAEEQLALYETQEEAAKAAAMEAVRIASEEEEEFESLKHLEDIKNYTLQLAE 530

Query: 537 INEERFAKILRKWARSEIED 556
            N E+   +LR W + + + 
Sbjct: 531 NNIEQSILVLRGWMKDDTKT 550


>gi|170751440|ref|YP_001757700.1| flagellar MS-ring protein [Methylobacterium radiotolerans JCM 2831]
 gi|170657962|gb|ACB27017.1| flagellar M-ring protein FliF [Methylobacterium radiotolerans JCM
           2831]
          Length = 525

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 135/532 (25%), Positives = 242/532 (45%), Gaps = 10/532 (1%)

Query: 25  LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN-GSSI 83
           +A+V L  I  F      V+ P    L+  L + D   +   L    I +    + G +I
Sbjct: 1   MAAVTLTLIGFFAFIILRVSRPDMGVLFSDLSMQDSASVVRELDSRGIRYETRGDAGQTI 60

Query: 84  SVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTI 143
             P   + K R+ LA +GLP+     GYE+FDK ++F  T+F+Q +  +RALEGE+AR+I
Sbjct: 61  LAPRPDLAKLRMDLAGKGLPTQGG-VGYEIFDKGDAFSSTNFVQNVNHLRALEGELARSI 119

Query: 144 QSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLD 203
           ++I  + AARVH+V+P+   F +    P+A+++++ +         AIRHLVA+AV  L 
Sbjct: 120 RAIGRVQAARVHLVLPERRLFERDRESPSAAIVLKLMGDLDAGQVRAIRHLVASAVEGLK 179

Query: 204 MGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSA 261
              ++++D  G+LL     +   ++         A++  +   I   +A  +G    R  
Sbjct: 180 PERISIVDERGRLLADGARDAATDVASGFEDRQVALERRLRGQIEDVVAGIVGPGRARVQ 239

Query: 262 VVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVP 321
           V AEL+++  + R   +DP+S+V RS +   ++    T   E  V+V   +P   +    
Sbjct: 240 VNAELDLNRVESRSETFDPESRVVRSAQTRTESAV--TGNAEGQVSVGNELPGA-NGGDK 296

Query: 322 LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI 381
            P   + T+K EE +NYEI+  +     +  +++RLS+AVV++        G+     + 
Sbjct: 297 APTPKDATNKNEETTNYEISRVTKTEIAEGGRIKRLSVAVVLDGVYAAAPDGKQTYSPRT 356

Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441
            + +  I  +V  A G +  RGD I + ++ F E       T       +L+     V+ 
Sbjct: 357 PAEIERITALVRGAVGFDKARGDQIEVVNLRFAEAPSVPQFTEPTLIESLLAPTKDDVLR 416

Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501
                V  LL   + L  +R L     A   E    +         A    ++      +
Sbjct: 417 MAELAVLALLTLIVLLTVVRPLVRQVLAPVPEAPALTASGLAIPGDAA---VVAGPGGTV 473

Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
              ++D  +      ++IN  V  ++  R++ M+  +     ++LR W + E
Sbjct: 474 TVIDRDSPTARLMEFAKINGQVQAETVQRVVDMVRASPSETVEVLRTWIQEE 525


>gi|152997451|ref|YP_001342286.1| flagellar MS-ring protein [Marinomonas sp. MWYL1]
 gi|150838375|gb|ABR72351.1| flagellar M-ring protein FliF [Marinomonas sp. MWYL1]
          Length = 558

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 127/560 (22%), Positives = 232/560 (41%), Gaps = 33/560 (5%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L+       L   R L L   +   I + +AA  + N P Y  +   +   + ++I   L
Sbjct: 15  LELVTGFNKLTVIRQLALMVGLAASIAIGLAAVLWSNGPDYKPVLSSITDYNADQIVEIL 74

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           S  NI F++  N  ++ V S    +AR+ LA  G+  S +  G E+ D+    G + F++
Sbjct: 75  SVNNIPFKLDQNTGALLVESDFYHQARLKLAGSGIV-SDNIVGMEIMDQEQGLGTSQFVE 133

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
                R LEGE++RTI S+  I +ARVH+ +P    F +   +P+ASV +          
Sbjct: 134 TTRYRRGLEGELSRTIASLQSIKSARVHLAIPKESVFVRDTRKPSASVFLELYPGRRLDK 193

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQAIQHEIEM 243
              EAI +LVA+++  L   DVTV+D  G LLT  + +   ++ GK     + ++  +  
Sbjct: 194 SQVEAIVNLVASSISQLSDKDVTVVDQRGTLLTEKDSDSELSVAGKQFDYARKVEEVLLQ 253

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE----- 298
            +N  L   +G   F++ V A+++    +     Y+PD    RS +  ++ + +      
Sbjct: 254 RVNNILGPVIGQGRFKAEVSADVDFTAVEKTNEQYNPDLLALRSEQTLRENRSAGTSASG 313

Query: 299 -----TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
                T+QP  AVT+ + +            +     ++E   N+E++     T      
Sbjct: 314 IPGALTNQPPGAVTIPEAVDENGAPIGGNTSAKNGQSREETTRNFELDRSISYTKRQQGM 373

Query: 354 LERLSIAVVVNK-GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
           + RLS+AVVV+    L             D  L  +  +V  A G +  RGD++++ +  
Sbjct: 374 VRRLSVAVVVDDLMSLNPDTSAIVRTPWNDDELGRLTLLVRDAVGYDPSRGDSVSVINSP 433

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F          +++ F          +   LV +   +L+  +    L+ L   +     
Sbjct: 434 FALPD-PEEPAIELPFYQQAW-FLGLIQPTLVGIFVLILLLVVVRPILKTLSEQNKIAVT 491

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
           E    +I S         T  + +D ++L S+   +   S     R            + 
Sbjct: 492 EDTEAAIFSD-------ETDEISDDQVSLVSAEDILVPGSPEKIDR--------QLNAIR 536

Query: 533 HMIEINEERFAKILRKWARS 552
            +I    ER A+++++W   
Sbjct: 537 GLIAEEPERVAQVVKQWVME 556


>gi|237653561|ref|YP_002889875.1| flagellar MS-ring protein [Thauera sp. MZ1T]
 gi|237624808|gb|ACR01498.1| flagellar M-ring protein FliF [Thauera sp. MZ1T]
          Length = 571

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 138/572 (24%), Positives = 239/572 (41%), Gaps = 45/572 (7%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           ++ Q  ++  +L   + +  A  I + I L   +  +  +P Y  L+  L+  D  +I  
Sbjct: 24  RMQQALQNLAALSTRQKIAGAVAIALAIALVAGSLLWNRAPEYAVLFSNLDERDGGQIIA 83

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L + NI +R+S  G +I VP + V + R+ LAA GLP  S  +G+EL D     G++ F
Sbjct: 84  ELQQRNIPYRMSPTGHAILVPQAQVHETRLRLAADGLPKGSL-AGFELMDG-QKLGISQF 141

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
            +++   RALEGE+ RT+Q+I  + +ARVH+ MP   +F +   RPTASVM+      + 
Sbjct: 142 NEQVNYQRALEGELTRTVQAIDAVASARVHLAMPKQTAFLRDDQRPTASVMVNLRGGRIL 201

Query: 186 --KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME---RNILGKSLSIVQAIQHE 240
                  I HLV+++VP +    V ++D  GKLLT          +    L  V+ ++  
Sbjct: 202 SPDQVAGIVHLVSSSVPRMHAEGVKIVDQNGKLLTEQADPLLRAGLDATQLEYVRLLEQG 261

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I+K LA  +G  N+ + V A+++ +  +     Y P+   +++IR S+    +   
Sbjct: 262 FIERIDKILAPLVGKGNYGAQVAADVDFNQVEQTAETYKPNPTPDQAIR-SQQTSEAFNP 320

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTD---------------KKEEQSNYEINTKSI 345
           QP +     Q +P     + P+P +   T+                +    NYE++    
Sbjct: 321 QPGA-----QGVPGALTNQPPVPATAPITNPQVAGGGGAQGLASGNRSAVLNYELDRNIQ 375

Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
                  +++RLS+AVVVN   L    G   +    D  +A I  +V  A G N+ RGDT
Sbjct: 376 HVKQAVGQIKRLSVAVVVNNRTLPGPDGTPTNVPLPDEEIARITNLVREAVGYNADRGDT 435

Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465
           I + S  F ++   +           +       +N L+ L+  L   F  +  L R   
Sbjct: 436 INVASGAFADDG--SGAAPPPWKDPEIVALGKEGLNWLLVLIAILFAYFGVIRPLLR--- 490

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
                       +++ P P                 +       + S        +   +
Sbjct: 491 ------------TVVPPKPKEEKKGAAAGEEGGEGEEGEEGVRVTLSGETGEGEETETFE 538

Query: 526 QSDLRLLHMIEINEERFAKILRKWARSEIEDR 557
           Q   R       + +  A +++ W     E R
Sbjct: 539 QRLERARAAARNDPKMVANLIKDWMGMNEEAR 570


>gi|319787100|ref|YP_004146575.1| flagellar M-ring protein FliF [Pseudoxanthomonas suwonensis 11-1]
 gi|317465612|gb|ADV27344.1| flagellar M-ring protein FliF [Pseudoxanthomonas suwonensis 11-1]
          Length = 573

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 121/533 (22%), Positives = 222/533 (41%), Gaps = 26/533 (4%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
             F+   P Y  LY  L+       +  L  A I FRI    S+ISVP   +  AR+ LA
Sbjct: 51  IFFWSQKPAYTPLYTGLDPKATAEATDLLRAAQIPFRIDQATSAISVPEENLHDARLKLA 110

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
             GL + S   G+EL ++   FG++ F++      ALE E+ RTI ++  +  ARVH+ +
Sbjct: 111 GSGL-TESGRLGFELMERDPGFGVSQFVENARYQHALETELVRTISTLRPVRDARVHLAI 169

Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           P   +F +     +ASV++   + +V +    +AI HLV++++P+L    VTV+D  G++
Sbjct: 170 PKPSAFTRAREAASASVVLELRSGAVLERNQVDAIVHLVSSSIPDLAPERVTVVDQNGRM 229

Query: 217 LT--ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           ++   N+    +       V+  +      I + L    G     + V  +++    +  
Sbjct: 230 ISRNGNDSASELSAVQFEQVRRQETSYNQRIRELLEPLTGSGRVNAEVTVDMDFSVTEEA 289

Query: 275 EIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVS-----DRKVPLPRS---- 325
             +++ + +  RS ++S++    E   P+       N P  +         P P +    
Sbjct: 290 RELFNAEPQKLRSEQVSENTTAGEG--PQGIPGATSNTPPGAVAQQNADGTPAPGTVATA 347

Query: 326 -LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY 384
                  +    N+E++     T     ++ R++ AV+V+        G+ A Q   +  
Sbjct: 348 TAAGNSSRSATRNFELDRTLQHTRQPAGRIRRVTAAVLVDHVPRAGGDGKVALQPLSEQE 407

Query: 385 LAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALV 444
           LA + ++V  A G +  RGD +++ +  F+      +      + D   R  A V     
Sbjct: 408 LARVQELVRQAVGFDPARGDVVSVVNAPFVREDAP-AAEPLKWWEDPRMRDIARV----- 461

Query: 445 FLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDS 503
            L G L+V  L    LR  L  I      +  G    S  P ++ V+      D  AL  
Sbjct: 462 -LAGALVVLALLFGVLRPSLRQIASPAGAKKSGSGEASDEPATAEVSLVEDDLDIPALAG 520

Query: 504 SNQDIFSHSRNLQSRINSYVSKQSDLR-LLHMIEINEERFAKILRKWARSEIE 555
               +   +      + S  S +  LR     +  + +R A++++ W  +E  
Sbjct: 521 DTAQLGLQAPGAPMALPSSNSYEDRLRNAREAVRADSKRVAQVVKDWLGNEAA 573


>gi|313673744|ref|YP_004051855.1| flagellar m-ring protein flif [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312940500|gb|ADR19692.1| flagellar M-ring protein FliF [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 554

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 140/570 (24%), Positives = 257/570 (45%), Gaps = 34/570 (5%)

Query: 1   MAILD---QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEV 57
           M + D   Q    F+  + + +  I+  A  IL+ I++ +   ++ N P Y  L+  L  
Sbjct: 1   MNLKDVGEQFKTVFQKFSKVQQIAIISAAVAILLSIIVLV---YWANKPVYKILFANLSQ 57

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
            D   +   L    I + + D+G +I VP+  V + RI LA +G+P      G+ELFDK 
Sbjct: 58  EDAAEVVAKLKAKKIPYNLKDSGKTIEVPAKDVYETRIELAKEGIPKGGG-VGFELFDKT 116

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
            SFG+T F Q +   RAL+GE++RTI ++  +  ARVH+ +P    F        A+V++
Sbjct: 117 -SFGITEFAQNVNYQRALQGELSRTISTLEEVEEARVHLTLPKDKLFITEDGEAKAAVVL 175

Query: 178 RAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI----LGKSL 231
           +            +AI  LV  AV  L + +V ++D+ G LL+ +  E N+        L
Sbjct: 176 KLKKGETLNRDKVKAIASLVVGAVKGLKIQNVQIVDTQGNLLSESLNEENLPYVKTQTQL 235

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
              + ++  I   IN  LA  LG +N  + V AE++ D ++I +  +D  + V RS +  
Sbjct: 236 EYQKKVEKIISSKINSLLATTLGENNAVAQVTAEIDFDKKEINKEEFD-QNPVLRSSQTI 294

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           +   ++  + P+    VE   P++++  +          K EE  N+EI           
Sbjct: 295 EIESKNTPNTPQGQPGVE---PNLAEPNIQQNGVNSTYTKNEETQNFEIGKTVTKEEKSI 351

Query: 352 YKLERLSIAVVVNKGRLTEVLGR---SADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
             ++RL+IAVVVN        G+   +    +    L +I  +V+ A G + +RGD I +
Sbjct: 352 GSIKRLTIAVVVNDKAEIVKEGKKEVTKYVPRTKEELDKIKGLVAKAAGFDEKRGDQIEV 411

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNID 467
           T++ F  +Q+  S  ++   M+ L    +  +  LV     LL  FL +   +++L +I 
Sbjct: 412 TNVSFDTSQMSESKLLEKEKMNELIIQISKYVMVLVMF---LLFYFLVIRPIMKKLGDIK 468

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSS-----NQDIFSHSRNLQSRINSY 522
           + K GE+     +            L  +D++    +      +        +   + + 
Sbjct: 469 ETKSGELAAVGDIPLK----GANVDLQLDDSVKFPKTLEELEREIESELDEKVSVDVGTV 524

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARS 552
            +K    ++   ++ + E  A +++ W + 
Sbjct: 525 KTKVMVKKIEEAVKEDPEMIANLIKTWLKE 554


>gi|238782822|ref|ZP_04626851.1| Flagellar M-ring protein [Yersinia bercovieri ATCC 43970]
 gi|238716245|gb|EEQ08228.1| Flagellar M-ring protein [Yersinia bercovieri ATCC 43970]
          Length = 569

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 135/594 (22%), Positives = 250/594 (42%), Gaps = 79/594 (13%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           MA+L+++            +  +IL       I L +A  F+  SP Y  L+  +   D 
Sbjct: 17  MAVLERIRS----------SPKIILLISASAAITLIIALLFWAKSPDYRVLFSNITDQDG 66

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ N+ +R  D G +I VP+  V +AR+ LA  GLP   +  G+EL D+   F
Sbjct: 67  GAIVSQLAQMNVPYRFEDRGGAIMVPADKVYEARLKLAQLGLPKGGA-VGFELLDQE-KF 124

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           G++ F +++   RALEGE++RTI+++  +  ARVH+ MP    F +   +P+ASV +R  
Sbjct: 125 GISQFSEQVNFQRALEGELSRTIETLGSVNGARVHLAMPKPSMFVREQKQPSASVTVRLN 184

Query: 181 NPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQ 238
           N  +   +   AI +L+A+AVP L    VT++D  G+LLT    +       L     ++
Sbjct: 185 NGRLLEGEQVSAITYLIASAVPGLSADSVTIVDQNGRLLTQRGGQTTQT-SQLKFTSEVE 243

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVER-SIRLSKDAQRS 297
            + +  I   L+  +G +N +S V A+L+    +     + P++  +R SIR S+ +   
Sbjct: 244 ADFQQRIQSILSPIVGRNNVKSQVTAQLDFTLHEQTAEQFQPNTAPDRMSIRSSQSSDAE 303

Query: 298 E-------------TSQPESAVTVEQNM--------------------PHVSDRKVPLPR 324
           +             ++QP    T                                  +  
Sbjct: 304 QGGKGGVGGVPGALSNQPSLPATAPITQAATPTAPGATGAAGAATAGATGAKGGAATVAT 363

Query: 325 SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY 384
            +   ++++  +NYE++            +ERLSIAVV+N   L    G SA        
Sbjct: 364 PIPFNNRRDNTTNYELDRTLTHIKRSTGSIERLSIAVVINY--LPTAEGESA--PLPKEQ 419

Query: 385 LAEINKIVSAATGINSRRGDTITITSMDF--LENQLFNSGTVQVSFMDILSRHFATVINA 442
           + +I+ +V  A G ++ RGDT+ I +  F  +E ++      Q  F+++L       + A
Sbjct: 420 MEQISALVKEAVGFSAERGDTVNIVNSPFNNVEEEVAPPFWQQAGFINLL-------MAA 472

Query: 443 LVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALD 502
             +L+  ++       A++                 + +   I + +             
Sbjct: 473 GRYLLVAIVAWLFWRKAIKP--------------AWLRNQELILARLELEKEARQAELDA 518

Query: 503 SSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIED 556
              +         + R+ + ++ Q+   L  + E      A ++R+W   E++ 
Sbjct: 519 HKRKAESGERAKAEQRVEAELNTQN---LRELAEQEPRVVALVIREWINKELKS 569


>gi|120603707|ref|YP_968107.1| flagellar M-ring protein FliF [Desulfovibrio vulgaris DP4]
 gi|120563936|gb|ABM29680.1| flagellar M-ring protein FliF [Desulfovibrio vulgaris DP4]
          Length = 538

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 138/560 (24%), Positives = 246/560 (43%), Gaps = 38/560 (6%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           D+   F+   +   R  I+ LA   LV + +F     ++N P Y  LY  L   D NR+ 
Sbjct: 10  DKARAFWSRISMSQRVFIVGLA---LVTVGIFFTLILWINRPDYRVLYSNLAGEDANRVV 66

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L    + +++ ++G ++ VP+  +   RI +A +G        G+E+FD +   G T 
Sbjct: 67  KLLQANKVPYKLENDGGTVLVPADKLYDLRIKVAGEG-NLVGQGIGFEIFDDL-KVGQTD 124

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP-- 182
           F+Q+I   RAL+GE+ RTI    G+  ARVH+V+P    F +   +P+ASV+++      
Sbjct: 125 FVQKINYQRALQGELIRTISEFPGVETARVHLVIPHRSLFIEEQQKPSASVVVKLREGKK 184

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQAIQH 239
              +  +AI +LV  AV  +D   V+V D++GK+L   T ++  + +    L     +Q 
Sbjct: 185 MEAQDVQAIVNLVVMAVEGMDRNRVSVADTSGKILYYPTEDDSLQGLTTTQLEYKMRLQQ 244

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
            +E  I + L   +G     + V A+++   + IR  +YDP+  V RS + S+++ R   
Sbjct: 245 NLERRIEELLYPVIGPGKVIAKVNADVDFSQRTIRRELYDPEKTVVRSEQRSEESTRGRA 304

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           +    A        +     +    S +   ++   +N+EIN +      +   L RLS+
Sbjct: 305 NLEAGAPDA-----NFRGDGISGSASTQEGTRETRTTNFEINKEEQNIVANVGDLSRLSV 359

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AV+V+        G      +    +  I ++VS+A G +  RGDT+ + S+ F    L 
Sbjct: 360 AVIVDGTYEKAADGTYTFVPRNAEEMQRIRQLVSSAVGYDRARGDTVEVNSISFGGPDLP 419

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
              ++   F+D   R    ++NAL+  +  LLV    + AL R       +   + G   
Sbjct: 420 QEASLPQLFLDYALRLGKPLLNALLVFLFLLLVVRPVVMALIR----PKVEGEMIEGLEG 475

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
           L       A+  G    D +      +DI +H+                     + E N 
Sbjct: 476 LPAGEERLALIEGDEEVDALDALRKIEDIKAHAM-------------------QLAEQNM 516

Query: 540 ERFAKILRKWARSEIEDRYT 559
           ++   I+R W ++    +  
Sbjct: 517 DQAVGIIRSWLKNAEGTKAG 536


>gi|54294647|ref|YP_127062.1| flagellar MS-ring protein [Legionella pneumophila str. Lens]
 gi|53754479|emb|CAH15963.1| Flagellar M-ring protein [Legionella pneumophila str. Lens]
          Length = 544

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 123/577 (21%), Positives = 242/577 (41%), Gaps = 63/577 (10%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           MA+ D          SL   R + +   +   I + +A   +   P Y  LY +L   D 
Sbjct: 1   MALADNASVAATKFASLSIPRQIGVLFGLAASIAIGVAVVLWSRDPSYVPLYSQLNAQDS 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS- 119
           + I   L   +IDF+I  N   + VP+  +  AR+ LAAQGLP   +  G++L       
Sbjct: 61  SEILTVLERNSIDFKIDKNNGLLMVPADELQSARLKLAAQGLPR-DTAIGHDLLGSSGGV 119

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           F  + FM+     +ALE E+ARTI   + I +ARVH+ +P   +F +    P+ASV I  
Sbjct: 120 FNTSQFMENARYKQALEAELARTISKFNNIKSARVHLAIPRESAFVRDSQEPSASVFIDV 179

Query: 180 INPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQ 235
            +    K  +  AI +LVA+++PNL  G VTV+D  G+LL         +   + L   Q
Sbjct: 180 YSGFEIKKHTIAAIVNLVASSIPNLSTGRVTVVDQDGQLLNEGSGYNLFSETERFLDYRQ 239

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            ++H+    I   L   LG    R+ V A+++  + +  + +++P+    RS +  +++ 
Sbjct: 240 NLEHQYAQKIQDILTPILGYGRVRAKVSADIDFTSYEQTQELFNPELSALRSEQTMQES- 298

Query: 296 RSETSQPESAVTVEQNMPHV--------SDRKVPLPRSLENTDKKEE----------QSN 337
           R+ +++         N P          + ++   P +L      ++            N
Sbjct: 299 RNASNEASGVPGTLSNTPQPNSSLGQKNNPQQNATPNNLPQQTSSDQMQAKDVRMQTTKN 358

Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSAD-QGKIDSYLAEINKIVSAAT 396
           +E++     T +    ++RLS+AV+V+   +     +  + +      + +I  +VS A 
Sbjct: 359 FELDKTISHTKNQPGTIKRLSVAVLVDNRPVMNDKTKKLEKKPLTKEEIEQIKLLVSDAI 418

Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456
           G+N +RGD++ + +  F++     +   +  +         + ++ +  + G L +  + 
Sbjct: 419 GLNVKRGDSLNVINSSFVKPDPIEAIPEEHFWQK------DSFLSVIKQIGGALFILAIL 472

Query: 457 LHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ 516
              LR +                                  N  +D +  +  +    L 
Sbjct: 473 FGVLRPMLK----------------------------TLASNKDMDQATDNQDTGDFTLD 504

Query: 517 SRINSYVSKQSDLR---LLHMIEINEERFAKILRKWA 550
            +I+    +  + +   L  +++   +R A++++ W 
Sbjct: 505 GKISFRDVQDYETQLSLLRQVVDKEPKRVAQVVKSWV 541


>gi|120554914|ref|YP_959265.1| flagellar MS-ring protein [Marinobacter aquaeolei VT8]
 gi|120324763|gb|ABM19078.1| flagellar M-ring protein FliF [Marinobacter aquaeolei VT8]
          Length = 568

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 124/556 (22%), Positives = 237/556 (42%), Gaps = 32/556 (5%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
                   L   R + L   +   + L +A   +   P+Y  +   L   +   ++  L 
Sbjct: 27  NLLLGFNRLNLLRQVGLMVGLAASVALGVAVVLWAQEPNYQPVVGDLSAYNPQDVTTILD 86

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
              ID+++     ++ VPS  V  AR+ LAA+G+ +     GYEL D+    G + FM+ 
Sbjct: 87  SNGIDYKMDPRTGALLVPSEQVYSARLKLAAEGV-TDQKTMGYELLDQERGLGTSQFMET 145

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV--YK 186
           I+  R LEGE+ARTI ++ G+  ARVH+ +P+   F +    PTASV +          +
Sbjct: 146 ISYRRGLEGELARTIAAMRGVRNARVHLAIPERSVFIRDAREPTASVFLEVFAGRRPEPE 205

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIEMN 244
              AI +LVA ++P ++   VTV+D  G LLT +E   E + +         ++  +   
Sbjct: 206 QIRAIVNLVAGSIPMMNRDQVTVVDQNGNLLTGDEVQAETDRMKDQYEYTSRVEERLTRR 265

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE------ 298
           +   +   +G   +R+ V A+L+    +  E +Y+P+ +  RS R   + + +       
Sbjct: 266 VASLIGPIVGEGRYRAEVTADLDFSAVERAEELYNPEQQAVRSERELSEQRVAGAQGGIP 325

Query: 299 ---TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
               +QP  A TV +     +  +   P +     + E   NYE++     T  +   ++
Sbjct: 326 GALANQPPGAATVPE-QATAAPGEDGAPAAPPVNVRSESTRNYELDRTVSYTRQELGAVK 384

Query: 356 RLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           R+++A+ V+  ++ +   G  + Q   ++ L  ++ +V  A G ++ RGD++T+ +  F 
Sbjct: 385 RVTVALAVDDMKVVDPETGEVSYQPWPEAELQRLSMLVRDAVGYSASRGDSVTVMNTAFA 444

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
             +                     V+  LV L+  L +    L  L      +  + GE 
Sbjct: 445 PEEAVEFEAPGFWEQPWFWDLMKQVLAGLVILILVLGLLRPTLKTLSGGGRRERGEGGEE 504

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
           G    L+      A+   +   D++ L  +         +   ++N+         L  +
Sbjct: 505 GEYGGLADIEGGQALRDAMSSQDDLLLPGAT-------DSYDRQLNA---------LKGL 548

Query: 535 IEINEERFAKILRKWA 550
           I  +  R A+++R+W 
Sbjct: 549 IAEDPARVAQVMRQWV 564


>gi|94264093|ref|ZP_01287892.1| Flagellar FliF M-ring protein [delta proteobacterium MLMS-1]
 gi|93455509|gb|EAT05699.1| Flagellar FliF M-ring protein [delta proteobacterium MLMS-1]
          Length = 530

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 136/560 (24%), Positives = 244/560 (43%), Gaps = 44/560 (7%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           I  Q++  F +   L   + +    V+ +     +A            L+  L   D   
Sbjct: 7   IFTQVVSIFNN---LSMIQKITAGVVVALVFGGLVAMTTMAPKLDEQVLFANLSQEDAAE 63

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +   L E NI +R+SD G++I VPS+ V + R+ LA +GLP      G+E+FD+V   G 
Sbjct: 64  VVERLREMNIPYRLSDTGNAIMVPSNQVHETRLALAGEGLPRGGG-VGFEVFDEV-GLGT 121

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T F+  +   RAL+GE+ARTI+    I  ARVHI  P    F +     TASV +R    
Sbjct: 122 TDFVNRLNLQRALQGELARTIRQFEQIQEARVHIATPRESVFIEDEKPVTASVSLRMRGR 181

Query: 183 SVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQ 238
                   ++I +LV+ AVP L    +T++D+ G+LL     ++   + G  L   Q I+
Sbjct: 182 DQLSQHQIQSIVNLVSTAVPGLSDESITLVDTAGRLLYRKRGDIGPVLSGSQLEYQQNIE 241

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
                 +   L   +GV+  R++V A+++ +   + E ++DP+ +V RS ++  +A +  
Sbjct: 242 ESARRKVESMLEEVVGVNRVRASVTADIDFNRVNLTEEIFDPEEQVVRSEQVITEADQ-R 300

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
            +Q       +  +   +D       S  +  + +   NYEI+ ++  T      ++RLS
Sbjct: 301 GNQARGIPGAKGELATFADEGGGGADS--SYQRSDVTRNYEISRQTRQTQEMGGGIQRLS 358

Query: 359 IAVVVNKG--RLTEVLGRSADQ--GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           +AV+V+    R+T+  GR+  +   + +  +    +++S A G N  RGD + + SM F 
Sbjct: 359 VAVMVDGTYERVTDEEGRTTMEYRPRSEEEMEYFERLISNAVGYNRDRGDQVEVVSMPFA 418

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
            + +       +     +++  A  +  L+   G +L     +    RL    D      
Sbjct: 419 LSAITEPEEDPMDRWREMAQWLAMPLVYLLIAFGVML---FVVRPFLRLLAAKD------ 469

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
                L     S   T G    +         D+    R L  +           R+  +
Sbjct: 470 -----LEAKRASQRATVGRAEGEA----EDEDDLSMGPRGLSDQ----------ERIYRL 510

Query: 535 IEINEERFAKILRKWARSEI 554
            + + +R A ++R+W R E+
Sbjct: 511 AQSDPDRAADLVRRWLREEV 530


>gi|302383920|ref|YP_003819743.1| flagellar M-ring protein FliF [Brevundimonas subvibrioides ATCC
           15264]
 gi|302194548|gb|ADL02120.1| flagellar M-ring protein FliF [Brevundimonas subvibrioides ATCC
           15264]
          Length = 542

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 146/549 (26%), Positives = 245/549 (44%), Gaps = 17/549 (3%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
           F  +    G  R+ ++  V      + +A    V       LY  L++ +   I+ +L +
Sbjct: 4   FTAALQRFGIGRLAMVLGVGAGVAAVLVALMLRVGQAPDALLYSNLDLREAGEITASLEQ 63

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
           + I +    +GS+I V    VG+AR+ LA +GL +S S  GYELFD  +  G T F Q+I
Sbjct: 64  SGIPYSTRGDGSTIMVNRDQVGEARLMLAGKGLVTSGS-VGYELFDTQSVLGQTEFQQQI 122

Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN-PSVYKSA 188
           +  RAL+GE+ARTI S+ G+ +ARV I +P    F++  A PTASV++            
Sbjct: 123 SEQRALQGELARTIMSMRGVQSARVAIALPKRELFQQDAAEPTASVVVGLGGRKLSSDQV 182

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ-AIQHEIEMNINK 247
            AIR ++A++VPNL    VTV+D T + L A + E      +    + A + +++  I  
Sbjct: 183 RAIRAVIASSVPNLKPNKVTVVDETNQTLAAADDEAGFSSATAEEAKGATEAQLQQRIKD 242

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVT 307
            +   +G    R  V A+++M     +E  YDPD +V RS   +    +  T   +   T
Sbjct: 243 LVEGVVGPGAARVQVTADIDMTRSTTQEQKYDPDGQVVRSTSTNGTQSQDTTGVADGGAT 302

Query: 308 VEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG- 366
              N+P  +        S E+ +   E +NYEI+  +  T  +  ++++LS+AV V+   
Sbjct: 303 ATNNIPGGAAPATTPAGSTESANT--ETTNYEISNTTTTTVKEPGEVKKLSVAVAVDGKL 360

Query: 367 -RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425
               E  G +    +    + +I  +V AA G N  RGD + +T++ F  + L ++G   
Sbjct: 361 TPAAEPGGEATYAPRTAEEITQIEDLVKAAMGFNEERGDQVRVTNVRFNRDALVSAGGTD 420

Query: 426 --VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
                ++         +  LV LV  LL+ F  L  L +  +    +    GG  I    
Sbjct: 421 GGSPLLNFTKNDIMRGVELLVLLVTALLLIFFVLRPLLKSASGGGQQMAMAGGGQIPVTS 480

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
             ++ V          ++           R   +RI   V   S  ++   +E + +   
Sbjct: 481 LQTTMVGG--------SMGQLPGPSEMEQRIDIARIEGQVKASSVKKVADFVEKHPDEST 532

Query: 544 KILRKWARS 552
            ILR W   
Sbjct: 533 SILRSWVHE 541


>gi|88704287|ref|ZP_01102001.1| flagellar M-ring protein FliF [Congregibacter litoralis KT71]
 gi|88701338|gb|EAQ98443.1| flagellar M-ring protein FliF [Congregibacter litoralis KT71]
          Length = 574

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 135/578 (23%), Positives = 233/578 (40%), Gaps = 34/578 (5%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           AI + L   F   +    TR L L   +   I L M    +V  P+Y  LY  +   D N
Sbjct: 4   AIDNNLFNRFSGFSRQPATRQLALLIGLAASIALAMGMVQWVVEPNYKPLYGTMAPEDTN 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            +  +L    +D+R+      ++VP+  V +AR+ LA  G P      G+E   +    G
Sbjct: 64  DVIASLEANGMDYRMDQRTGMVAVPAGEVHRARLLLAGDGYPR-GEGVGFESLYREQEIG 122

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           L+SFM++    RALE E+ARTI ++  +  ARVH+ M    +F +   +P ASVM+    
Sbjct: 123 LSSFMEQARFHRALESELARTISALDNVRGARVHLAMAKQSAFLRQREQPAASVMLNLYA 182

Query: 182 PSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAI 237
                 +    I HLVA++VPNL+   V+V+D  GKLL+    + E           + +
Sbjct: 183 GRTLNDRQLAGIIHLVASSVPNLESEQVSVVDQQGKLLSQQGRDDEFAFTQDQFQYTRQL 242

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR- 296
           +  +   I   L   LG +  R+ V A+++    +  E  Y PD++V RS + S++    
Sbjct: 243 ESNLSARIVDILEPILGANAVRAQVAADVDFTRVERTEETYAPDTRV-RSEQTSEETSNQ 301

Query: 297 ---------------------SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ 335
                                ++ +QP        N     D    L         +   
Sbjct: 302 PYGGGVPGTLSNEPPIDTTVTAQQAQPNLGANAGVNTGVNVDATAQLGAIPPARTSRRST 361

Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395
            NYE++            L++LSIAVV++    T   G +  +      + E+  +V  A
Sbjct: 362 VNYEMDKTISHVRETPGTLQKLSIAVVLDYIESTADDGTTTREPMPQERIDEVTSLVREA 421

Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455
            G ++ RGDT+++ S  F+E        ++ S ++        +   L+ L+  L + F+
Sbjct: 422 VGFDAARGDTVSVISASFVEAPAIEDAVIESSILE--EDWIWQLGKGLLALIVLLSLIFV 479

Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL 515
            +  L +   +         G        +++    G M +D + L   NQ     +   
Sbjct: 480 VVRPLVKFAAVPVPMMQSPQGIQGPDGQAVAALGGAG-MSDDQVTLGGQNQAGLPGTSGD 538

Query: 516 QSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                     Q    +        +R A+++R W   +
Sbjct: 539 GGAGGYQQQLQMARSV---AAGEPDRAAQVVRNWVSDD 573


>gi|291613068|ref|YP_003523225.1| flagellar M-ring protein FliF [Sideroxydans lithotrophicus ES-1]
 gi|291583180|gb|ADE10838.1| flagellar M-ring protein FliF [Sideroxydans lithotrophicus ES-1]
          Length = 546

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 114/533 (21%), Positives = 228/533 (42%), Gaps = 43/533 (8%)

Query: 38  AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97
               +  +P Y  LY  +   D   +  +L + NI ++ ++ G ++ VP+  V + R+ +
Sbjct: 40  GLFMWGQTPDYRVLYANMSERDGGAVIESLQQQNIPYKFTE-GGTLMVPADRVYEVRLQM 98

Query: 98  AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
           AA+GLP   +  G+EL +    FG + F++++   RALEGE++R++++I+ + +ARVH+ 
Sbjct: 99  AAKGLPKGGT-VGFELME-NQKFGTSQFLEQVNYQRALEGELSRSVETIASVASARVHLA 156

Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
           +P    F K   +P+ASV++     +        AI HL++++VPN++  +VTV+D +G 
Sbjct: 157 IPKQSVFVKEQQKPSASVILSLRAGNSLDEGQVSAIVHLISSSVPNMNAQNVTVVDQSGT 216

Query: 216 LLTA---NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272
           LL++   +  E+ +    L  V+ I+ +    I   L    GV N R+ V A L+    +
Sbjct: 217 LLSSARDSNAEQLMDATQLKYVRQIEQDYVKRIEDILIPITGVQNVRAQVTASLDFSQTE 276

Query: 273 IREIVYDPDSK----VERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV-------- 320
                + P+        RS++  +    + ++          N P V             
Sbjct: 277 QTAETFRPNQPPNQAAVRSLQTLETQNGTTST--GGVPGALSNQPPVPATAPIVTPASAV 334

Query: 321 PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380
                      KE  +NYE++     T      ++RLSIAVVVN    T   G++  +  
Sbjct: 335 VAAAGTAGNMHKELTTNYEVDRTIQHTKLPVGSIKRLSIAVVVNNPSTTGKDGKATSRPY 394

Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440
            D+  A+I  +V    G +++RGD++ + +  F E Q   + T      D ++       
Sbjct: 395 TDAEKAQITALVKETVGFDAKRGDSLNLLNSAFNEQQEIIAETPMWKQPDTIAMAKDIFK 454

Query: 441 NALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIA 500
             L+      L+  +   A + +     A++  +   +        +    G        
Sbjct: 455 YLLIAGGIGFLLFGIIKPAFKTISEQSAAQETAMMSAAQHGQISHQAGNAAG-------- 506

Query: 501 LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                           ++ ++   + +      + + + +  A ++++W   E
Sbjct: 507 -------------QYAAQQSASSYEDNLQLAKQLAKDDPKIVATVVKEWVNKE 546


>gi|52841987|ref|YP_095786.1| flagellar MS-ring protein [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|148359304|ref|YP_001250511.1| flagellar basal body M-ring protein FliF [Legionella pneumophila
           str. Corby]
 gi|52629098|gb|AAU27839.1| flagellar basal body M-ring protein FliF [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|148281077|gb|ABQ55165.1| flagellar basal body M-ring protein FliF [Legionella pneumophila
           str. Corby]
 gi|307610459|emb|CBX00030.1| flagellar M-ring protein [Legionella pneumophila 130b]
          Length = 544

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 126/577 (21%), Positives = 242/577 (41%), Gaps = 63/577 (10%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           MA+ D          SL   R + +   +   I + +A   +   P Y  LY +L   D 
Sbjct: 1   MALADNASVAATKFASLSIPRQIGVLFGLAASIAIGVAVVLWSRDPSYVPLYSQLNAQDS 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS- 119
           + I   L   +IDF+I  N   + VP+  +  AR+ LAAQGLP   +  G++L       
Sbjct: 61  SEILTILERNSIDFKIDKNNGLLMVPADELQSARLKLAAQGLPR-DTAIGHDLLGSSGGV 119

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           F  + FM+     +ALE E+ARTI   + I +ARVH+ +P   +F +    P+ASV I  
Sbjct: 120 FNTSQFMENARYRQALEAELARTISKFNNIKSARVHLAIPRESAFVRDSQEPSASVFIDV 179

Query: 180 INPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQ 235
            +    K  +  AI +LVA+++PNL  G VTV+D  G+LL         +   + L   Q
Sbjct: 180 YSGFEIKKHTIAAIVNLVASSIPNLSAGRVTVVDQDGQLLNEGSGYNLFSETERFLDYRQ 239

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            ++H+    I   L   LG    R+ V A+++  + +  + +++P+    RS +  +++ 
Sbjct: 240 NLEHQYAQKIQDILTPILGYGRVRAKVSADIDFTSYEQTQELFNPELSALRSEQTMQES- 298

Query: 296 RSETSQPESAVTVEQNMPHV--------SDRKVPLPRSLENTDKKEE----------QSN 337
           R+ +++         N P          + ++   P +L      ++            N
Sbjct: 299 RNASNEASGVPGTLSNTPQPNSSLGQKNNPQQNATPNNLPQQTSSDQMQAKDVRMQTTKN 358

Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSAD-QGKIDSYLAEINKIVSAAT 396
           +E++     T +    ++RLS+AV+V+   +     +  + +      + +I  +VS A 
Sbjct: 359 FELDKTISHTKNQPGTIKRLSVAVLVDNRPVMNDKTKKLEKKPLTKEEIEQIKLLVSDAI 418

Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456
           G+N +RGD++ + +  F++     +   +  +       F +VI     + G L +  + 
Sbjct: 419 GLNVKRGDSLNVINSSFVKPDPIEAIPEEHFWQ---KDSFWSVIKQ---IGGALFILAIL 472

Query: 457 LHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ 516
              LR +                                  N  +D +  +  +    L 
Sbjct: 473 FGVLRPMLK----------------------------TLASNKDMDQATDNQDTGDFTLD 504

Query: 517 SRINSYVSKQSDLR---LLHMIEINEERFAKILRKWA 550
            +I+    +  + +   L  +++   +R A++++ W 
Sbjct: 505 GKISFRDVQDYETQLSLLRQVVDKEPKRVAQVVKSWV 541


>gi|258592505|emb|CBE68814.1| Flagellar basal body M-ring protein [NC10 bacterium 'Dutch
           sediment']
          Length = 539

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 133/557 (23%), Positives = 240/557 (43%), Gaps = 37/557 (6%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            +++   Q +      GR   +++    L  +   +   F  + P    L+ +L  SD  
Sbjct: 7   KVVELFKQVWGGLGLTGRALTVLVGGGALTAL---LWMVFSTHRPDMTTLFSQLNPSDAG 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L    + +R+ D G+ I VPS++V + R+HLA +GLP      G+E+FD+    G
Sbjct: 64  AIVDELKSGKVSYRVVDGGTRILVPSAVVHEIRLHLATRGLPQGGG-VGFEIFDRTT-LG 121

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
            T F+Q +   RAL+GE+ARTI  +  + AARVH+ +P    F +     TASV++    
Sbjct: 122 TTDFVQRLNYQRALQGELARTIGQLKEVTAARVHLALPQPSVFTEQEKPATASVVLNLRP 181

Query: 182 P--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK--SLSIVQAI 237
                 +    I HLV+++V  L+   +TV+D++GKL+      R   G        +A+
Sbjct: 182 GARLTPEQVRGIVHLVSSSVEGLNADRITVVDTSGKLIARPAEGRLGAGSTGQFEAQEAV 241

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           + E+E  +   L   LG +     V A+++  + +  E  +DP   V +S + + + Q+S
Sbjct: 242 EGELERRVRTMLEEILGPNKATVRVAAQMDFTSVERTEERFDPRG-VIKSEQRTTETQQS 300

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
            T+ P +   V  N+P  +       +S   + K+ E   Y+++           +L+R+
Sbjct: 301 VTASPAAVAGVASNVPDQTATPSQSGQSTAKSTKEAETVQYDVSKVLERKVFSPGELKRV 360

Query: 358 SIAVVVNKGRLTEVLGRSADQ----GKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           S+AV+V+        G+  ++     +    L +I   V  A G ++ RGD + +    F
Sbjct: 361 SVAVMVDGTYKPVPDGKGGERKEYVPRKSDELEKIKVAVKNAVGFSAARGDEVEVVEFPF 420

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
             +       +           + +++  ++  VG LLV   GL  L R          +
Sbjct: 421 DTSATEKERALMEE--AERKAFWYSLVKPVLMGVGVLLVLVFGLRPLIRSLKERRLPTFD 478

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
             G  +    P  +A+ TG  P+   ALD ++ D                       L+ 
Sbjct: 479 TPGM-LSMSQPGPTAIETG--PDQAPALDVASDDPLRTG------------------LME 517

Query: 534 MIEINEERFAKILRKWA 550
           +   N    A+++R W 
Sbjct: 518 LARNNPNVVAQLVRAWM 534


>gi|54297673|ref|YP_124042.1| flagellar MS-ring protein [Legionella pneumophila str. Paris]
 gi|53751458|emb|CAH12876.1| Flagellar M-ring protein [Legionella pneumophila str. Paris]
          Length = 544

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 126/577 (21%), Positives = 242/577 (41%), Gaps = 63/577 (10%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           MA+ D          SL   R + +   +   I + +A   +   P Y  LY +L   D 
Sbjct: 1   MALADNASVAATKFASLSIPRQIGVLFGLAASIAIGVAVVLWSRDPSYVPLYSQLNAQDS 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS- 119
           + I   L   +IDF+I  N   + VP+  +  AR+ LAAQGLP   +  G++L       
Sbjct: 61  SEIMTILERNSIDFKIDKNNGLLMVPADELQSARLKLAAQGLPR-DTAIGHDLLGSSGGV 119

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           F  + FM+     +ALE E+ARTI   + I +ARVH+ +P   +F +    P+ASV I  
Sbjct: 120 FNTSQFMENARYKQALEAELARTISKFNNIKSARVHLAIPRESAFVRDSQEPSASVFIDV 179

Query: 180 INPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQ 235
            +    K  +  AI +LVA+++PNL  G VTV+D  G+LL         +   + L   Q
Sbjct: 180 YSGFEIKKHTIAAIVNLVASSIPNLSAGRVTVVDQDGQLLNEGSGYNLFSETERFLDYRQ 239

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            ++H+    I   L   LG    R+ V A+++  + +  + +++P+    RS +  +++ 
Sbjct: 240 NLEHQYAQKIQDILTPILGYGRVRAKVSADIDFTSYEQTQELFNPELSALRSEQTMQES- 298

Query: 296 RSETSQPESAVTVEQNMPHV--------SDRKVPLPRSLENTDKKEE----------QSN 337
           R+ +++         N P          + ++   P +L      ++            N
Sbjct: 299 RNASNEASGVPGTLSNTPQPNSSLGQKNNPQQNATPNNLPQQTSSDQMQAKDVRMQTTKN 358

Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSAD-QGKIDSYLAEINKIVSAAT 396
           +E++     T +    ++RLS+AV+V+   +     +  + +      + +I  +VS A 
Sbjct: 359 FELDKTISHTKNQPGTIKRLSVAVLVDNRPVMNDKTKKLEKKPLTKEEIEQIKLLVSDAI 418

Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456
           G+N +RGD++ + +  F++     +   +  +       F +VI     + G L +  + 
Sbjct: 419 GLNVKRGDSLNVINSSFVKPDPIEAIPEEHFWQ---KDSFWSVIKQ---IGGALFILAIL 472

Query: 457 LHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ 516
              LR +                                  N  +D +  +  +    L 
Sbjct: 473 FGVLRPMLK----------------------------TLASNKDIDQATDNQDTGDFTLD 504

Query: 517 SRINSYVSKQSDLR---LLHMIEINEERFAKILRKWA 550
            +I+    +  + +   L  +++   +R A++++ W 
Sbjct: 505 GKISFRDVQDYETQLSLLRQVVDKEPKRVAQVVKSWV 541


>gi|294664059|ref|ZP_06729461.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292606162|gb|EFF49411.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 572

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 110/547 (20%), Positives = 216/547 (39%), Gaps = 33/547 (6%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++  Q+F    SL  TR L + ++I + +   +A  F+   P Y +LY  L+       +
Sbjct: 15  EKAGQWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAA 74

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L  A I ++I     +ISVP   +  AR+ LA  GL    +  G+EL +K   FG++ 
Sbjct: 75  DLLRTAQIPYKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQ 134

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           F++      ALE E++RTI ++  +  ARVH+ +P   +F +     +ASV++       
Sbjct: 135 FVENARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQG 194

Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240
            +    +AI +LVA+++P++    VTV+D +G++L+  +   +          V+  +  
Sbjct: 195 LERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESS 254

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I + L    G          +++    +    +Y+ +    RS ++S  +  +   
Sbjct: 255 YNQRIRELLEPMTGPGRVNPETSVDMDFSVVEEARELYNGEPAKLRSEQVSDTSTSATG- 313

Query: 301 QPESAVTVEQNMPHV--------------SDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346
            P+       N P                +        +      K    NYE++     
Sbjct: 314 -PQGPPGATSNSPGQPPAPAVAGAPGTPAAANGQAAAPATPTESSKSATRNYELDRTLQH 372

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
           T     +++R+S+AV+++        G+  +Q    + L  I  +V  A G ++ RGDT+
Sbjct: 373 TRQPAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQAVGFDAARGDTV 432

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
           ++ +  F+   +      +             V N L  LVG ++V  L    +R     
Sbjct: 433 SVMNAPFVREAVAGEEGPKWWEDP-------RVQNGLRLLVGAVVVLALLFGVVRPTLRQ 485

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
                     +          +    ++  D+  +    +D     ++ ++         
Sbjct: 486 LTGVTAVKDKQGKAGKDGTPQSADVRMVDEDDDLMPRLEEDTAQIGQDKKTPDR------ 539

Query: 527 SDLRLLH 533
           S  RL  
Sbjct: 540 SARRLRR 546


>gi|328542763|ref|YP_004302872.1| flagellar M-ring protein [polymorphum gilvum SL003B-26A1]
 gi|326412509|gb|ADZ69572.1| Flagellar M-ring protein [Polymorphum gilvum SL003B-26A1]
          Length = 538

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 139/553 (25%), Positives = 256/553 (46%), Gaps = 21/553 (3%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++ L++F +   +LG TR+  + +V  + I +F    F V +P    LY  L + D + I
Sbjct: 1   MNGLVEFIR---TLGPTRVAAMGAVAAILIGVFAFIIFRVTAPQMTQLYSDLTLEDSSAI 57

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    I F +  +G++I +P   V + R+ LA +GLP+  S  GYE+FD+ ++ G T
Sbjct: 58  VNQLESLGIPFELKRDGATIMIPKEQVARVRMRLAEEGLPTGGS-IGYEIFDRSDTLGAT 116

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
           SF+Q I  +RA+EGE+ARTI+S+  IV+ARVH+V+P+   F++    P+AS+ I+     
Sbjct: 117 SFVQNINHLRAMEGELARTIRSLDRIVSARVHLVIPERQLFQRDRRPPSASIAIKTRGSL 176

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ---AIQHE 240
                 AI+HLVAAAV  L    V+++D TG+LL     E      + S+ +    I+  
Sbjct: 177 GQNEIRAIQHLVAAAVDGLGPERVSIVDDTGRLLATGSDESAEGIVASSLQERTFEIEQR 236

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           ++  I + L + +G    R  V AE++ +        +DP+ +V RS +  +++  S + 
Sbjct: 237 LKNQIEEILNSVVGPGRARVRVAAEVDFNRITETSEKFDPEGQVVRSTQSKEESSTSISR 296

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           Q  + VTV   +P+  +         E ++  EE  N+EI+        +  +++RLS+A
Sbjct: 297 Q--AGVTVGNQIPNA-EADAGEGGDREGSNLAEEIVNFEISKSVRTEVVEAGRIKRLSVA 353

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           V+V+        G      +    L  I  +V +A G ++ RGD + + ++ F +    +
Sbjct: 354 VLVDGVYSPNESGEVQYAPRTQEVLDRIAVLVRSAVGFDAARGDVVEVVNLRFAQAPEPD 413

Query: 421 SGTVQVSFMDILSRHFATVIN-ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
             +      +             ++ L+  LL+ F+    LRR+   ++    E+     
Sbjct: 414 FDSASAGLFEFTRDDVLRFAELGVLLLISLLLLLFVVRPLLRRIVTPEEKAPQELVIAPD 473

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
            +              +D + ++   +          ++    +   S  ++  MI+   
Sbjct: 474 GTLVAEVEVPAEAKEEDDEVVIEWLEE----------AKAQGALQASSIAKVGAMIDDYP 523

Query: 540 ERFAKILRKWARS 552
                I+R W   
Sbjct: 524 TEAVTIVRGWLEE 536


>gi|114319870|ref|YP_741553.1| flagellar M-ring protein FliF [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226264|gb|ABI56063.1| flagellar M-ring protein FliF [Alkalilimnicola ehrlichii MLHE-1]
          Length = 580

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 133/560 (23%), Positives = 234/560 (41%), Gaps = 23/560 (4%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +DQL   F    ++ R   L LA V+L  +   +    +   P Y  L+ +L+  D   +
Sbjct: 38  MDQLEGLFGGRQNVMR---LGLAVVLLFTVAAGVLLYLWAQEPSYRTLFSELDDQDAAAV 94

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L E  I +R+ +   ++ VPS  V  AR+ LAA+GLP   +  G+E+  + ++FG +
Sbjct: 95  IEQLEEQGIPYRLDERTGAVRVPSDQVHPARLQLAAEGLPR-GTGFGFEMLQEDSAFGTS 153

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
            FM+     RALE E+AR+I ++  + AARVH+ +P    F +   +P ASV++      
Sbjct: 154 EFMEGARFDRALETELARSIGTLRQVDAARVHLALPRESVFVRDRRQPRASVVVNLAQGR 213

Query: 184 VY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQAIQHE 240
               +  +AI H+VA++VP+L   +V+V+D  G+LLT +E                ++  
Sbjct: 214 RLNDEQVDAIVHMVASSVPDLAHENVSVVDERGRLLTRDEGRGLASTAGQFQYKTQVEET 273

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I   LA  +G +  R+ V A L+   QQ  E +YDPDS+V RS  L     +    
Sbjct: 274 YVRRIEDLLAPLVGRNRVRAQVNASLDFSEQQRTEELYDPDSRVIRSEALQGRRTQQGAD 333

Query: 301 QPESAVTVEQNMPHVSDR--KVPLPRSLENTD-KKEEQSNYEINTKSIATTHDNYKLERL 357
                     N P  + +      P +    D    E  NYEI+            ++R+
Sbjct: 334 AAMGVPGALTNQPPGAGQLDGEEAPENPPPVDISSSETRNYEISRTLRQVRDPIGSIQRV 393

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           S+AVVV++   T+  G +  +   D  +  IN +V  A G ++ RGD++ + +  FLE +
Sbjct: 394 SVAVVVDERITTDEEGNTVREPLSDEEMDRINALVQEAVGFDAARGDSVNVVNAAFLEEE 453

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
              +            R       A +  +         L  +R +      ++ +    
Sbjct: 454 PVEAMPPVPLLEREWVRELIRFAIAALAFIAL------LLFVVRPMIKGMQRQRDQALRA 507

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
                    +    G         D++ Q + +  ++         +K        ++  
Sbjct: 508 PASEEQARLAQQGGGGGAAQLAGPDANEQALLAGVQHKPYEAKLEAAK-------KLVND 560

Query: 538 NEERFAKILRKWARSEIEDR 557
             E  A +++ W   +   R
Sbjct: 561 EPELAANVIKSWLAEDDGKR 580


>gi|296107351|ref|YP_003619051.1| flagellar M-ring protein FliF [Legionella pneumophila 2300/99
           Alcoy]
 gi|295649252|gb|ADG25099.1| flagellar M-ring protein FliF [Legionella pneumophila 2300/99
           Alcoy]
          Length = 544

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 126/577 (21%), Positives = 242/577 (41%), Gaps = 63/577 (10%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           MA+ D          SL   R + +   +   I + +A   +   P Y  LY +L   D 
Sbjct: 1   MALADNASVAATKFASLSIPRQVGVLFGLAASIAIGVAVVLWSRDPSYVPLYSQLNAQDS 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS- 119
           + I   L   +IDF+I  N   + VP+  +  AR+ LAAQGLP   +  G++L       
Sbjct: 61  SEILTILERNSIDFKIDKNNGLLMVPADELQSARLKLAAQGLPR-DTAIGHDLLGSSGGV 119

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           F  + FM+     +ALE E+ARTI   + I +ARVH+ +P   +F +    P+ASV I  
Sbjct: 120 FNTSQFMENARYRQALEAELARTISKFNNIKSARVHLAIPRESAFVRDSQEPSASVFIDV 179

Query: 180 INPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQ 235
            +    K  +  AI +LVA+++PNL  G VTV+D  G+LL         +   + L   Q
Sbjct: 180 YSGFEIKKHTIAAIVNLVASSIPNLSAGRVTVVDQDGQLLNEGSGYNLFSETERFLDYRQ 239

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            ++H+    I   L   LG    R+ V A+++  + +  + +++P+    RS +  +++ 
Sbjct: 240 NLEHQYAQKIQDILTPILGYGRVRAKVSADIDFTSYEQTQELFNPELSALRSEQTMQES- 298

Query: 296 RSETSQPESAVTVEQNMPHV--------SDRKVPLPRSLENTDKKEE----------QSN 337
           R+ +++         N P          + ++   P +L      ++            N
Sbjct: 299 RNASNEASGVPGTLSNTPQPNSSLGQKNNPQQNATPNNLPQQTSSDQMQAKDVRMQTTKN 358

Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSAD-QGKIDSYLAEINKIVSAAT 396
           +E++     T +    ++RLS+AV+V+   +     +  + +      + +I  +VS A 
Sbjct: 359 FELDKTISHTKNQPGTIKRLSVAVLVDNRPVMNDKTKKLEKKPLTKEEIEQIKLLVSDAI 418

Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456
           G+N +RGD++ + +  F++     +   +  +       F +VI     + G L +  + 
Sbjct: 419 GLNVKRGDSLNVINSSFVKPDPIEAIPEEHFWQ---KDSFWSVIKQ---IGGALFILAIL 472

Query: 457 LHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ 516
              LR +                                  N  +D +  +  +    L 
Sbjct: 473 FGVLRPMLK----------------------------TLASNKDMDQATDNQDTGDFTLD 504

Query: 517 SRINSYVSKQSDLR---LLHMIEINEERFAKILRKWA 550
            +I+    +  + +   L  +++   +R A++++ W 
Sbjct: 505 GKISFRDVQDYETQLSLLRQVVDKEPKRVAQVVKSWV 541


>gi|94500269|ref|ZP_01306802.1| flagellar M-ring protein [Oceanobacter sp. RED65]
 gi|94427568|gb|EAT12545.1| flagellar M-ring protein [Oceanobacter sp. RED65]
          Length = 577

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 118/561 (21%), Positives = 229/561 (40%), Gaps = 39/561 (6%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +         L   R + L       + L +    +     Y  L   LE  +   I   
Sbjct: 39  INPIMMGFNKLTIVRQVALLIGFAGILALGIGVIIWSQEVTYRPLISNLEDYNAKEILQT 98

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L E  ID+RI+     ++VP + +  AR+ LA   +    +  G EL D+    G + F+
Sbjct: 99  LDEKGIDYRINPTTGIVTVPEAEIHDARLALAPI-VAEIDTTVGLELLDQEQGLGTSQFI 157

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI--NPSV 184
           +     R LEGE+ARTI S+  +  ARVH+ +P    F +    P ASV +         
Sbjct: 158 ESARYRRGLEGELARTIASLQSVRNARVHLALPKQSVFVRDDREPRASVFLEIYGGKGLK 217

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIE 242
            + AEAI +L+A+++P L + +VT++D  G LL+    + E  +  K     + +++ + 
Sbjct: 218 REQAEAIINLIASSIPELPVENVTLVDQKGNLLSKEGQDEEDLLATKQFDYTRKVENSLH 277

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
             + + L   LG DNF++ V A+++    +  + +++PD    RS +     +  +    
Sbjct: 278 QRVQRILEPVLGSDNFQAEVSADVDFTMVEQTQELFNPDLIALRSEQTLNQEKVEKP--E 335

Query: 303 ESAVTVEQNMPHVSD------RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
                   N P  +        +   P +     K E   NYE++     T H   +L R
Sbjct: 336 GGIPGALSNQPPGAAEVPEEVDENGNPVAQPIERKSEATRNYEVDRTLSHTQHQVGRLRR 395

Query: 357 LSIAVVVNKG-RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           L+++V VN   ++    G        ++ L  +  +V  + G N+ RGD++++ +  FL 
Sbjct: 396 LTVSVAVNDREKVNPETGVVESVPWTEAELKRLELLVKDSVGFNAARGDSVSVVNSLFLG 455

Query: 416 NQLFNSG---TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
             +         Q  F +I+ +           ++  L +  L    +R +   +   +G
Sbjct: 456 GAVELGEPDFWKQPWFWEIVKQ-----------VLAGLFLLILIFGVIRPIVK-NLIDRG 503

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSH-SRNLQSRINSYVSKQSDLRL 531
           ++   + +            L  +D + L  +++ +    S   + ++++         L
Sbjct: 504 KMDEVAEIEGELDELGDGDDLFGDDKVTLAGADEFLLPGASEGFERQLDA---------L 554

Query: 532 LHMIEINEERFAKILRKWARS 552
             +I  +  R A+  +KW   
Sbjct: 555 KGLIAEDPARVAQSFKKWVND 575


>gi|331005205|ref|ZP_08328599.1| Flagellar M-ring protein fliF [gamma proteobacterium IMCC1989]
 gi|330420987|gb|EGG95259.1| Flagellar M-ring protein fliF [gamma proteobacterium IMCC1989]
          Length = 565

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 118/558 (21%), Positives = 237/558 (42%), Gaps = 27/558 (4%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
              +   +L   R + L   +   + +  A   +     Y  LY  L   D + I   L 
Sbjct: 22  NLVEGFNNLNLLRQVGLMVALAASVAIGFAVVLWTQEEDYRPLYSNLNQLDSSEIISILE 81

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
           +  I F++     ++ V +  +  AR+ LA  GLP++ S  G+EL DK    G + FM+ 
Sbjct: 82  QNAIQFKVDTKTGALLVSAQDIHTARLKLAEVGLPNTGS-VGFELLDKEQPLGSSQFMEA 140

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS--VYK 186
               R LEGE+ARTI S++ + AARVH+ +P    F +    P ASV +          +
Sbjct: 141 TRYRRGLEGELARTITSLNAVRAARVHLAIPKRSVFVRDAREPRASVFVELYPGRAITPQ 200

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEMN 244
              A+ +LVA+++  L + +VT++D  G LL+  E +  +    + L   + ++ +I   
Sbjct: 201 QVVAMSNLVASSISELSLKNVTIVDQKGNLLSKGEEDPQLVQAAQELEYTREVEKKIISR 260

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           I   L   +G D FR+ V A+++ +  +  E +++PD    RS +   + +         
Sbjct: 261 IQALLDPIVGGDRFRAEVAAQVDFNQVEQAEEMFNPDLPAIRSEQTVDEQRVGGGVG--G 318

Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERL 357
                 N P  +     +    +N +         +   N+E++     T H   K+ RL
Sbjct: 319 IPGALTNQPPANADAPEIAAGGDNNNAQQSSNSRSQSTRNFELDRTMSYTKHQVGKVRRL 378

Query: 358 SIAVVVNKGRLTEV-LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           S+AVVV+   +T+   G    +   D+ +  ++ +V  A G +  RGD++ I +  FL +
Sbjct: 379 SVAVVVDDRLVTDPLTGEQKYETWSDNEIERLSILVRDAVGFSPARGDSVNIINTPFLND 438

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476
                     +F +     F  +I  ++ L+  L++    L  + +      ++  +   
Sbjct: 439 GFNAEEIQAPNFWEEEW--FTALIKPIIGLLIILIMVLGLLRPILKTLARTGSETRDDEE 496

Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQ-DIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
              L+    +   +   + ++ + L  +    +     + +  +NS         +  ++
Sbjct: 497 AQQLAALEAAGLGSFDELSDEAVTLTGTTALSLPGPEESYEQMLNS---------VKGLV 547

Query: 536 EINEERFAKILRKWARSE 553
             +  R ++++++W   E
Sbjct: 548 ADDPGRVSQVIKRWINEE 565


>gi|289208337|ref|YP_003460403.1| flagellar M-ring protein FliF [Thioalkalivibrio sp. K90mix]
 gi|288943968|gb|ADC71667.1| flagellar M-ring protein FliF [Thioalkalivibrio sp. K90mix]
          Length = 552

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 119/551 (21%), Positives = 222/551 (40%), Gaps = 26/551 (4%)

Query: 12  KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71
           +    +   R L L  ++   I++ +A  ++   P Y  L+ ++E  +   +  ALS+A 
Sbjct: 17  REFNGMPAGRQLALLGMLAGAIVVIVAVLYWAFRPTYVPLFPRMESEEAAEVVQALSQAG 76

Query: 72  IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131
           I +++      + VP   V +AR+ LA++GLP S  + G+EL  +    G +  ++    
Sbjct: 77  ISYQVDATTGQVKVPQGDVAEARLQLASEGLPRSG-DVGFELLQEDTGLGTSRMVEGARF 135

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAE 189
            RA+EGE+ART+ S+  +  ARVHI   +   F +     +ASV++              
Sbjct: 136 HRAMEGELARTVASLDAVERARVHIAQAEQSVFVRDRRPASASVVVHLRGSRSLSDSQVA 195

Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS--LSIVQAIQHEIEMNINK 247
           AI HLVA++   L+   VTV+D  G+LLT +  +R  +  S  LS  + ++      I+ 
Sbjct: 196 AIVHLVASSTSELEAERVTVVDQRGRLLTQDGADRGGMASSDRLSFSREVEQRYAERIHD 255

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVT 307
            LA  +G D  R  V A+++    +  E +YDP++   RS +  +D +      P     
Sbjct: 256 LLAPIVGSDKVRVQVNADIDFSQVERTEELYDPETIALRSEQTREDERTGMDGGPAGVPG 315

Query: 308 VEQNMPHVSDR-----KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
              N P              P  L  +       NYE++ +          + R+S AVV
Sbjct: 316 ALTNQPPEGGAVEDPEGEMAPAPLPTSRSANVTRNYEVDRRINHIREAPGGIRRVSTAVV 375

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           V+        G +    +    L  I  +V  A G +  RGDT+ + +  F E       
Sbjct: 376 VDFREQVGEDGATESVARDAEELERIEALVREAVGFSEARGDTLNVVTAPF-EAPAEEMI 434

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482
             +V F       F  ++     L+  L++    +    +       +      +  L+ 
Sbjct: 435 EDEVPFWS--QSWFLEMVKIGAGLLLALILLLTVVRPALKQLMASPPRDRRADQQRALTD 492

Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542
                +          +A  +  +       +L++             +  M+  + +R 
Sbjct: 493 ESDDDSAGAPAGSQSAVAALTGPKGPDQQEMDLEA-------------VREMVREDPKRV 539

Query: 543 AKILRKWARSE 553
           A++++ W   +
Sbjct: 540 AQVMKTWLGDD 550


>gi|254418232|ref|ZP_05031956.1| flagellar M-ring protein FliF [Brevundimonas sp. BAL3]
 gi|196184409|gb|EDX79385.1| flagellar M-ring protein FliF [Brevundimonas sp. BAL3]
          Length = 545

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 140/548 (25%), Positives = 238/548 (43%), Gaps = 12/548 (2%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
           F  +    G  R+  +  V      + +A    +       LY  L++ +   I+ AL +
Sbjct: 4   FTAALQKFGIGRLAAVLGVAAGVTAVLVAVMLRMGQAPDALLYSNLDLREAGEITTALQQ 63

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
           A I +    +GS++ V    VG AR+ +A +GL +S S  GYE+FD  +  G T F Q++
Sbjct: 64  AGIKYTSKGDGSTVMVNRDDVGTARMLIAGKGLVTSGS-VGYEIFDNQSVLGQTEFQQQL 122

Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS-VYKSA 188
              RAL+GE++RTI S+ GI AARVHI MP    F      PTA+V++            
Sbjct: 123 NEQRALQGELSRTIMSMRGITAARVHITMPRREMFTAAAGDPTAAVLVGLGGRDLTPDQV 182

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ-AIQHEIEMNINK 247
            AIR+LVA++VPNL    VTV D   + L A   +      S +  +   + +++  I  
Sbjct: 183 RAIRNLVASSVPNLKPDRVTVADQNNRTLAAGSDDGTFSSASAAETKGNTEAQLQSRIKD 242

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVT 307
            +   +G+   R  V A+++      +E  +DPD +V RS   +       T Q +  VT
Sbjct: 243 IVEGVVGIGAARVQVTADIDQSRSTTQEQKFDPDGQVVRSTTANGSQSSDTTGQNDGGVT 302

Query: 308 VEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367
              N+P  +        +    +   E +NYEI+  +  TT +  ++++L++AV V+   
Sbjct: 303 AANNIPGGAPPATTPAGATSAENA--ETTNYEISNTTTTTTKEPGEVKKLAVAVAVDGKW 360

Query: 368 LTEVLGR--SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG-TV 424
                G+       +    +A+I  +V+AA GI+  RGD I + ++ F  +     G   
Sbjct: 361 TPAADGKGEPTYAPRTAEEIAQIKSLVAAAAGIDEARGDKIEVINVRFNHDTGIAGGLEG 420

Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPP 484
           + S +D        +I   +  V  LL+ F  L  L +                +    P
Sbjct: 421 KSSLLDFSRTDVMRLIELGILAVVALLLIFFVLRPLLKTAGGAAPGAVAAAPAGL----P 476

Query: 485 ISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAK 544
           +++  TT +  +    L           +   +RI   V   S  ++   ++ + +  A 
Sbjct: 477 VATVTTTVIGADGQPQLVQLPAPNEMDQKIDIARIEGQVKASSVKKVADFVQAHPDEAAG 536

Query: 545 ILRKWARS 552
           ILR W   
Sbjct: 537 ILRNWVAE 544


>gi|218887376|ref|YP_002436697.1| flagellar M-ring protein FliF [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758330|gb|ACL09229.1| flagellar M-ring protein FliF [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 539

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 133/557 (23%), Positives = 243/557 (43%), Gaps = 43/557 (7%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           ++ +   F++  +   R   + +A + +  + +F    F++N P Y  LY  L   D +R
Sbjct: 8   VIQKAKGFWERISISQR---IFIAGLAVAVVAVFFGLVFWMNRPDYRVLYSNLSPEDASR 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +   L    + +++   GSSI+VP+  V   R+ +A +G        G+E+FD+V   G 
Sbjct: 65  VVKLLQADKVAYKLESGGSSITVPADKVYDLRLKVAGEG-NLVGQGIGFEIFDQV-KVGQ 122

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T F+Q+I   RAL+GE++RTI     + +ARVH+V+P    F +   +P+ SV+++  + 
Sbjct: 123 TDFVQKINYQRALQGELSRTISEFPNVESARVHLVIPHRSLFIEEQQKPSVSVVLKLRDS 182

Query: 183 SV---YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQA 236
           S     K  +AI +LV  AV  LD   V++ D+TGK+L A + + +I G     L     
Sbjct: 183 SKKLESKDVQAIVNLVVMAVEGLDKYKVSIADTTGKILYAPDEDGSITGMTTTQLDHKLR 242

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           +Q  +E  I + L   LG     + V A+L+   + IR+ +YDP+  V RS + S+++QR
Sbjct: 243 MQQTLERRIEELLYPVLGAGKIIAKVNADLDFSQRTIRKELYDPEKTVVRSEQRSEESQR 302

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
             ++    +        +          S +  +++   +NYEIN +          + R
Sbjct: 303 GRSNLEAGSPDA-----NFRGDSPTGGASTQEGNRETRTTNYEINKEEQNIVAQVGDISR 357

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           L++AV+V+        G+ A   +    +  I ++V+ A G +  RGDTI ++S+ F   
Sbjct: 358 LTVAVIVDGTYEKGADGQWAFVPRKAEDVERIRQLVANAVGYDRARGDTIEVSSISFGGP 417

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476
            +    ++    MD   R    ++NA                               +  
Sbjct: 418 DVPQESSLPQLVMDYALRLGKPLLNA-------------------------LLVFLFLVL 452

Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR--LLHM 534
                   +      G M      L    + +     + +      + K  D++   L M
Sbjct: 453 VVRPVVLAMIRPRVEGEMIEGLEGLPEGEERLALIEGDEEVDALDALKKIEDIKAHALQM 512

Query: 535 IEINEERFAKILRKWAR 551
            E N ++   I+R W +
Sbjct: 513 AEQNMDQAVSIIRSWLK 529


>gi|292489162|ref|YP_003532049.1| flagellar M-ring protein FliF [Erwinia amylovora CFBP1430]
 gi|292900280|ref|YP_003539649.1| flagellar M-ring protein [Erwinia amylovora ATCC 49946]
 gi|291200128|emb|CBJ47254.1| flagellar M-ring protein [Erwinia amylovora ATCC 49946]
 gi|291554596|emb|CBA22238.1| Flagellar M-ring protein FliF [Erwinia amylovora CFBP1430]
 gi|312173321|emb|CBX81576.1| Flagellar M-ring protein FliF [Erwinia amylovora ATCC BAA-2158]
          Length = 561

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 136/571 (23%), Positives = 240/571 (42%), Gaps = 55/571 (9%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
           +  SL  +  L+L       I + +A  F+   P Y  L+  +   D   I   LS+ N+
Sbjct: 19  AMNSLRNSPKLLLPIAAAAAISVMIALMFWAKEPGYRVLFNNISDEDGGAIVSQLSQMNV 78

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
            +RI   G +I VP + V + R+ +A QGLP   S  G+EL D+   FG++ F +++   
Sbjct: 79  PYRIDTAGGAIMVPEAQVHEVRMKMAQQGLPKGGS-VGFELLDQE-KFGISQFSEQVNFQ 136

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAEA 190
           RALEGE+ARTI+++  I  ARVH+ +P    F +   +PTASV +              A
Sbjct: 137 RALEGELARTIENLGPIQHARVHLAVPKPSMFVRDQKQPTASVNVTLAQGRALDDGQVTA 196

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALA 250
           I HL+++AV  L   +VT++D  G LLT +     +    +     I+ + +  I + LA
Sbjct: 197 ITHLISSAVSGLPAANVTLVDQRGNLLTQSGTGA-LQTSQVKYTNEIEADYQQRIQRLLA 255

Query: 251 AFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK----VERSIRLSKDAQRSE-------- 298
             +G  N R+ V A+L+   Q+  +  Y P+++      RS + S+ AQ +         
Sbjct: 256 PLVGDSNVRTQVTAQLDFTQQERTDEQYQPNAEREKMAIRSRQSSQAAQGNGRGSGGVPG 315

Query: 299 --TSQPESAVTV----EQNMPHVSDRKVPLPRS-------LENTDKKEEQSNYEINTKSI 345
             ++QP +  T       N P  + +     ++           ++ +E +NYE++   I
Sbjct: 316 ALSNQPPTPATAPLTKPLNAPAANGKNANNEKTPPAGEVAQPYNNRNDETTNYELDRTLI 375

Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
            T      ++RLS+AVV+N                  + LA IN +V  A G + +RGD+
Sbjct: 376 HTKTSVGHIQRLSVAVVINHMAQG---AEGKTGPLPAAELARINTLVKEAIGYSEQRGDS 432

Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465
           + I +  F  N +       +           T+   LV  +       +G    RRL  
Sbjct: 433 VNIVNSPF--NGVVEEVMPPLWQQQSFQTLIMTLARYLVIAI-------IGWVMWRRLVQ 483

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
               +  +   K +              +  +   L+   ++  +             ++
Sbjct: 484 PVWIRHQDTTIKRL-------------ELEKEARKLELEEKNKAAQMSAHAKEKRRTDTE 530

Query: 526 QSDLRLLHMIEINEERFAKILRKWARSEIED 556
            +  +L  + E      A ++R+W   E + 
Sbjct: 531 INGQQLRELAEQEPRVIALVMRQWLNKEHKS 561


>gi|297538194|ref|YP_003673963.1| flagellar M-ring protein FliF [Methylotenera sp. 301]
 gi|297257541|gb|ADI29386.1| flagellar M-ring protein FliF [Methylotenera sp. 301]
          Length = 551

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 128/568 (22%), Positives = 234/568 (41%), Gaps = 45/568 (7%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           A+++Q +    +G +      LIL       + + +    +   P Y  L+      D  
Sbjct: 8   ALINQGVNKGGTGLNSQLGNKLILVVAAAAVVAVMVVFWLWSQQPDYRVLFSNYTDKDGG 67

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L + N+ ++ SD+G++I VP+S V +AR+ LA+ GLP    N G+E+ +    FG
Sbjct: 68  AIVAELEKMNVPYKFSDSGTAILVPASQVHQARLKLASDGLPKGG-NIGFEILE-NQKFG 125

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           ++ F++++   RALEGE+ R+IQSI  +  AR+H+ +P    F +    PTASV++    
Sbjct: 126 VSQFVEQVNFQRALEGELERSIQSIGAVETARIHLAIPKASVFVRDQQSPTASVLLNLRA 185

Query: 182 PSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLSIVQA 236
                 +   A+ HLVA++VPNL   +VTV+D  G LL+         N+    L  +  
Sbjct: 186 GRSLDAQQVGAVVHLVASSVPNLPAANVTVVDQNGNLLSDTSKKMGANNLDPTQLKYIDD 245

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           IQ  I   +   +   +G  N R+   AE++  + +    +Y P+ K + +   S  +  
Sbjct: 246 IQQSIIKRVESIITPIVGAKNVRAEASAEIDFSSLEQAAEIYKPNQKPDDAAIRSLQSNE 305

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLP-------------RSLENTDKKEEQSNYEINTK 343
           S TS   +A  V   + +        P              +    ++K   +N+E++  
Sbjct: 306 SLTSNGGAATGVPGALSNQPPPNATAPITTPAGAAPGATAEAAPVNNQKNTTTNFEVDKT 365

Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403
              +      ++RL++AVVVN   + +  G+   +    +   +IN +   A G N  RG
Sbjct: 366 VRYSQQGMGGIKRLNVAVVVNNMPVVDKKGKVTYRPLTAAEKTQINDLAMQAMGFNKERG 425

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
           D +T+ +  F          V +        +      AL F+VG +++  +   AL  +
Sbjct: 426 DALTVVNSSFAGEPEEIIPEVPMWKNPETIEYGKD---ALRFIVGIVVLLLIYKRALSPM 482

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                A   ++          ++ +   G      +A  +SN                  
Sbjct: 483 LRKLTAPSPKLLNAPGDEDAVVNLSGAEGQAQLAAVAGSNSNLAAA-------------- 528

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551
                     + + N    A ++  W  
Sbjct: 529 --------KQLAKDNPRMVASVVANWTS 548


>gi|319944162|ref|ZP_08018438.1| flagellar basal-body M-ring protein FliF [Lautropia mirabilis ATCC
           51599]
 gi|319742457|gb|EFV94868.1| flagellar basal-body M-ring protein FliF [Lautropia mirabilis ATCC
           51599]
          Length = 574

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 119/567 (20%), Positives = 231/567 (40%), Gaps = 42/567 (7%)

Query: 14  GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73
              +     +   + ++    + ++A  +   P +  LY  L   +   +   L + N+ 
Sbjct: 23  FAQMPAATKIKAGAGVIALGAVAVSAWLWSQQPDWKVLYNNLPDREGGAVIAQLVQMNVP 82

Query: 74  FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
           ++ ++ G +I VP++MV  AR+ LAAQGLP +S  +GYEL +K   FG T F + +   R
Sbjct: 83  YKYTEGGGAIMVPANMVNDARLRLAAQGLP-ASDTTGYELLEK-QRFGTTQFQERLNFQR 140

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAI 191
            LEGE+AR+IQS++ +  ARVH+ MP    F +   +P+ASVM+        +    + I
Sbjct: 141 GLEGELARSIQSLAAVKQARVHLAMPVQSGFLREQQKPSASVMLTLYPGRTLERGQVQGI 200

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQAIQHEIEMNINKALA 250
             LVA++VP++    V+V+D  GKLL+  +     +    ++    I+  +   I+  LA
Sbjct: 201 LALVASSVPDMSPKQVSVVDQYGKLLSDLDGDGSEMNTAQINYRNRIESTLTRRIDDLLA 260

Query: 251 AFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE------------ 298
             +G  N R+ V A+++    +     Y P+     +   S+    S             
Sbjct: 261 PIVGDGNIRAQVAADIDFTQSEATAETYAPNQNPGAAAMRSQQTMASRDGSGASDAAGGV 320

Query: 299 ----TSQPESAVTVEQNMPHVSDRKVPLPRSLEN----TDKKEEQSNYEINTKSIATTHD 350
               ++QP + V+   N    + R      S +     + ++E  +NYE++     T + 
Sbjct: 321 PGALSNQPPATVSAPINGAAQATRAAGSASSADGGTGVSTRQESVTNYEVDRTVKVTRNQ 380

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
              + RLS+AV+VN+ +     G+          +  I  +V  A G ++ RGD++ + +
Sbjct: 381 TGTIRRLSVAVLVNQKQTKGDDGKEVSTPLTPLEMQSIEALVKQAVGFSAERGDSVQVVN 440

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
             F +        V +            +     F++  L++  + +             
Sbjct: 441 AAFTKRPEVVDPEVPLWKDPETVSLAKDLGKQFGFVLLALIILMMFIRP----------- 489

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ-SRINSYVSKQSDL 529
                    +  P  ++        ++ + L S         + L+ +         +  
Sbjct: 490 -----ALQAMKKPAPAAGNNLDAKVDEQLELPSPEGSTKGGVQRLEVNPEQGMGMTIAQH 544

Query: 530 RLLHMIEINEERFAKILRKWARSEIED 556
             L +   +    A ++R W      D
Sbjct: 545 NALQLARTDPTAVATVVRNWVNGTNPD 571


>gi|310764888|gb|ADP09838.1| Flagellar basal-body M-ring protein [Erwinia sp. Ejp617]
          Length = 561

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 126/544 (23%), Positives = 225/544 (41%), Gaps = 55/544 (10%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
            F+   P Y  L+  +   D   I   LS+ N+ +RI   G +I VP + V + R+ +A 
Sbjct: 46  MFWAKEPGYRVLFNNVSDEDGGAIVSQLSQMNVPYRIDTPGGAIMVPEAQVHEVRMKMAQ 105

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
           QGLP   S  G+EL D+   FG++ F +++   RALEGE+ARTI+++  I  ARVH+ +P
Sbjct: 106 QGLPKGGS-VGFELLDQE-KFGISQFSEQVNFQRALEGELARTIENLGPIQHARVHLAVP 163

Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
               F +   +PTASV +              AI HL+++AV  L  G+VT++D  G LL
Sbjct: 164 KPSMFVRDQKQPTASVNVTLAQGRTLDDGQVTAITHLISSAVSGLPAGNVTLVDQRGNLL 223

Query: 218 TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
           T +     +    +     I+ + +  I + LA  +G  N R+ V A+L+   Q+  +  
Sbjct: 224 TQSGTGA-LQSSQVKYTNEIEADYQQRIQRLLAPLVGDSNVRTQVTAQLDFTQQERTDEQ 282

Query: 278 YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQ------------------NMPHVSDRK 319
           Y P+++ E+    S+ + ++       A  V                    N P  + + 
Sbjct: 283 YQPNAEREKMAIRSRQSSQAAQGNGRGAGGVPGALSNQPPTPATAPLTKPLNAPAANGKN 342

Query: 320 VPLPRS-------LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372
               ++           ++ +E +NYE++   I T      ++RLS+AVV+N        
Sbjct: 343 ANNEKTPAAGEVAQPYNNRNDETTNYELDRTLIHTKTSVGHIQRLSVAVVINHMAQG--- 399

Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDIL 432
                     + LA IN +V  A G + +RGD+I I +  F          +        
Sbjct: 400 AEGKPGPLPAAELARINTLVKEAIGYSEQRGDSINIVNSPFNGVAEEVMPPLW------- 452

Query: 433 SRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTG 492
                +    ++ L   L++  +G    RRL      +  +   K +             
Sbjct: 453 --QQHSFQTLMMTLARYLVIAIIGWVMWRRLVQPVWIRHQDTTIKRL------------- 497

Query: 493 LMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
            +  +   L+   ++  +             ++ +  +L  + E      A ++R+W   
Sbjct: 498 ELEKEARKLELDEKNNAAEMTAHAKAKRRTDTEINGQQLRELAEQEPRVIALVMRQWLNK 557

Query: 553 EIED 556
           E + 
Sbjct: 558 EHKS 561


>gi|330502763|ref|YP_004379632.1| flagellar MS-ring protein [Pseudomonas mendocina NK-01]
 gi|328917049|gb|AEB57880.1| flagellar MS-ring protein [Pseudomonas mendocina NK-01]
          Length = 594

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 126/591 (21%), Positives = 242/591 (40%), Gaps = 65/591 (10%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++   +   R L L   +   + +  A   +   P Y  LY  L   D  ++   L
Sbjct: 25  LSFLENLAEMSVLRQLGLLVGLAASVAIGFAVVLWSQQPDYRPLYGSLNGMDATQVVETL 84

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + + ID+ I  N  ++ V +  + +AR+ LAA G   + ++ G+E+ D+    G + FM+
Sbjct: 85  TASGIDYTIEPNSGALLVKADDLARARMRLAAAGAAPTDTSVGFEILDREQGLGTSQFME 144

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
                R LEGE+ART+ S++ + AARVH+ MP    F +   +P+ASV++        + 
Sbjct: 145 ATRYRRGLEGELARTVASLNNVKAARVHLAMPKASVFVRDERKPSASVLVELYPGRALEP 204

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP LD G VTV+D  G LL+  +   E  + GK     + ++     
Sbjct: 205 SQVMAIVNLVATSVPELDKGQVTVVDQKGNLLSDQQELSELTMAGKQFDYTRRMEGLFTQ 264

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            ++  L   LG   +++ V A+++  + +    +++PD    RS +   + ++S +  P+
Sbjct: 265 RVHNILQPVLGTGRYKAEVSADVDFSSVESTSEMFNPDQPALRSEQQVNEQRQS-SLPPQ 323

Query: 304 SAVT--------------------------------VEQNMPHVSDRKVPLP--RSLENT 329
                                               V+ N   + D     P        
Sbjct: 324 GVPGALSNQPPGPAAAPQQAAGAAAPAGPVAAGQPLVDANGQQIMDPATGQPMLAPYPAD 383

Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLS-IAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
            +++   N+E++     T     +L RLS   VV ++ R+    G +         LA  
Sbjct: 384 KREQSTRNFELDRSISYTRQQQGRLRRLSVAVVVDDQVRVDPATGETTRVPWTADDLARF 443

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALV 444
            ++V  + G ++ RGD++++ +  F  +       +    Q  F DI+ +          
Sbjct: 444 TRLVQDSVGFDASRGDSVSVINTAFTASLGEEIPDIPFYTQPWFWDIVKQ---------- 493

Query: 445 FLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSS 504
            ++G L +  L    LR + N                      A   G + +D ++L   
Sbjct: 494 -VLGVLFILVLVFGVLRPVLNNITGGGRGKDLAGSGDVELGEMAGLDGELSDDRVSLGGP 552

Query: 505 NQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
              +  S S    +++N+         +  ++  +  R A+++++W  S+ 
Sbjct: 553 QSIMLPSPSEGYDAQLNA---------IKSLVAEDPGRVAQVVKEWINSDE 594


>gi|220925883|ref|YP_002501185.1| flagellar MS-ring protein [Methylobacterium nodulans ORS 2060]
 gi|219950490|gb|ACL60882.1| flagellar M-ring protein FliF [Methylobacterium nodulans ORS 2060]
          Length = 541

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 137/543 (25%), Positives = 248/543 (45%), Gaps = 18/543 (3%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
             G  R+  + +V L  +  F      V+ P    LY  L + D + +   L    + + 
Sbjct: 10  KFGPARLAAMGAVTLTLVGFFAFVILRVSRPEMGVLYADLSMQDASAVIRDLDARGLRYE 69

Query: 76  ISDN-GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134
                G +I  P + + + R+ LA +GLPS+    GYE+FDK ++F  T+F+Q +  +RA
Sbjct: 70  TRGEMGQTILAPRADLARLRMDLAGKGLPSAGG-VGYEIFDKGDAFSSTTFVQNVNHLRA 128

Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHL 194
           LEGE+AR+I++I  + AAR+H+V+P+   F +    P+A+++++           A+RHL
Sbjct: 129 LEGELARSIRAIGRVQAARIHLVIPEKRLFARDREPPSAAIVLKLSGDLDPGQVRAVRHL 188

Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK--SLSIVQAIQHEIEMNINKALAAF 252
           VA++V  L    ++++D  G+LL       +  G+         ++H +   +   +A  
Sbjct: 189 VASSVEGLKPDRISIVDERGRLLADGAKPEDAQGRLGLDERQANLEHRLRAQVEGIVAGI 248

Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNM 312
           +G    R  V AEL+ +  + R   +DP+S+V RS +   + Q+S+    E+ V+V   +
Sbjct: 249 VGSGRARVQVAAELDANRIESRSETFDPESRVVRSTQTRSETQQSQ-GPGETGVSVGNEL 307

Query: 313 PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372
           P   D       + E ++K EE +NYEI+  +    ++  ++ RLS+AVV++        
Sbjct: 308 PGARD-PAQQNGTREASNKNEETTNYEISRVTRTEINEGGRIRRLSVAVVIDGTYTPGPD 366

Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ---VSFM 429
           GR     +    L  I  +V  A G +  RGD I + ++ F E  +      +    SF 
Sbjct: 367 GRPVYAPRPQDELDRITALVRTAVGYDKARGDQIEVVNLRFAEGPVPAEIPEEGLLASFK 426

Query: 430 DILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAV 489
                        ++ L+  ++V  +    LRR+  +D      V     + P       
Sbjct: 427 PTKEDVLRLAELGVLALLTLVVVLAVVRPLLRRVIAVDAPPAELVAAGIPVLP------- 479

Query: 490 TTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549
             G +P    A D+   D  +      +RIN  +  ++  R+  ++  N    A++LR W
Sbjct: 480 --GALPGAAPAEDAPPPDSPAKHLVDFARINGKLQAETIERVADIVRQNPAETAEVLRNW 537

Query: 550 ARS 552
              
Sbjct: 538 IND 540


>gi|325295413|ref|YP_004281927.1| flagellar M-ring protein FliF [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065861|gb|ADY73868.1| flagellar M-ring protein FliF [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 529

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 139/569 (24%), Positives = 241/569 (42%), Gaps = 52/569 (9%)

Query: 1   MAILD---QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEV 57
           M I +   ++ + FK   +  +  IL+L+++ LV  + F+A +    +  Y  LY  L  
Sbjct: 1   MNIKEIQTKVQEIFKKNAN-PKNVILLLSALTLVSFLAFIAIK-QSTTEDYAVLYTHLSP 58

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
            D   I   L E +I +++  NGS I VP   V   R+ LAA+GLP      G+ELFD+ 
Sbjct: 59  DDAGSILSVLQEEHIPYKVEGNGSIILVPKEKVYDIRLKLAAKGLP-HGKVVGFELFDE- 116

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
              G+T F + +  +RALEGEI RTI+ I+ I   +V+I +P    F +    P AS+++
Sbjct: 117 PKLGITQFQENVEFLRALEGEIERTIKRINAIQDVKVNIALPKDSIFVRESEEPKASILV 176

Query: 178 RAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLS 232
                     +  +AI  LV+ AVP L   +VTV+D+ G++LT   +   +     K L 
Sbjct: 177 NLWPGRELTKEQVKAIVFLVSHAVPGLKPENVTVIDNRGRVLTDLLSGNEDETGSSKELE 236

Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292
           + + ++ EIE  I   L+  LG          E+     + +E +YDPD     S R  +
Sbjct: 237 VKRKLEKEIERKIQSMLSQVLGSGKVVVRASVEIETGRLEKKEELYDPDMTAVVSERKIQ 296

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
           + +     + +       N+P V +        +   +KK+  +NY+++     T    +
Sbjct: 297 EKETGIKPKEQGVPGTTTNVPPVLNLN--QGNEILKKEKKDVTTNYDVSKTIQKTITPIF 354

Query: 353 KLERLSIAVVVNKGRLTEVLGRSAD----QGKIDSYLAEINKIVSAATGINSRRGDTITI 408
           K++R+S+ V+V+     E      +      +    +    +IV +A G + +RGDT+T+
Sbjct: 355 KIKRISVGVLVDGKYQKEKDKAGNEIIKFVPRSQEEIKTYEEIVKSAIGYDPKRGDTVTV 414

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
            S+ F   Q       Q  F           I A   L+  +LV  + L  L+       
Sbjct: 415 ASVPFEAKQFVQKEKSQKKFP-------WIYIAAGGGLLTLILVGIIALKLLKSKKT--- 464

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
                          P    +   LM       +   +    H  +    I         
Sbjct: 465 --------------EPQQPEIPETLMAEMKARAEHKEELEELHIESDPLYI--------- 501

Query: 529 LRLLHMIEINEERFAKILRKWARSEIEDR 557
            +++ + + + E  A ++ KW R E   +
Sbjct: 502 -KIVEIAKEHPELVANVISKWIREEGISK 529


>gi|259907606|ref|YP_002647962.1| Flagellar basal-body M-ring protein [Erwinia pyrifoliae Ep1/96]
 gi|224963228|emb|CAX54712.1| Flagellar basal-body M-ring protein [Erwinia pyrifoliae Ep1/96]
 gi|283477448|emb|CAY73364.1| Flagellar M-ring protein FliF [Erwinia pyrifoliae DSM 12163]
          Length = 561

 Score =  388 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 129/545 (23%), Positives = 224/545 (41%), Gaps = 55/545 (10%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
             F+   P Y  L+  +   D   I   LS+ N+ +RI   G +I VP + V + R+ +A
Sbjct: 45  LMFWAKEPGYRVLFNNVSDEDGGAIVSQLSQMNVPYRIDTPGGAIMVPEAQVHEVRMKMA 104

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
            QGLP   S  G+EL D+   FG++ F +++   RALEGE+ARTI+++  I  ARVH+ +
Sbjct: 105 QQGLPKGGS-VGFELLDQE-KFGISQFSEQVNFQRALEGELARTIENLGPIQHARVHLAV 162

Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           P    F +   +PTASV +              AI HL+++AV  L   +VT++D  G L
Sbjct: 163 PKPSMFVRDQKQPTASVNVTLAQGRTLDDGQVTAITHLISSAVSGLPAANVTLVDQRGNL 222

Query: 217 LTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           LT +     +    +     I+ + +  I + LA  +G  N R+ V A+L+   Q+  + 
Sbjct: 223 LTQSGTGA-LQSSQVKYTNEIEADYQQRIQRLLAPLVGDSNVRTQVTAQLDFTQQERTDE 281

Query: 277 VYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQ------------------NMPHVSDR 318
            Y P+++ E+    S+ + ++       A  V                    N P  + +
Sbjct: 282 QYQPNAEREKMAIRSRQSSQAAQGNGRGAGGVPGALSNQPPTPATAPLTKPLNAPAANGK 341

Query: 319 KVPLPRS-------LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV 371
                ++           ++ +E +NYE++   I T      ++RLS+AVV+N       
Sbjct: 342 NANNEKTPAAGEVAQPYNNRNDETTNYELDRTLIHTKTSVGHIQRLSVAVVINHMAQG-- 399

Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDI 431
                      + LA IN +V  A G + +RGD+I I +  F          +       
Sbjct: 400 -AEGKPGPLPAAELARINTLVKEAIGYSEQRGDSINIVNSPFNGVAEEVMPPLW------ 452

Query: 432 LSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTT 491
                 +    ++ L   L++  +G    RRL      +  +   K +            
Sbjct: 453 ---QQHSFQTLMMTLARYLVIAIIGWVMWRRLVQPVWIRHQDTTIKRLELEKEAR----- 504

Query: 492 GLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWAR 551
                  +ALD  N      +     R     ++ +  +L  + E      A ++R+W  
Sbjct: 505 ------KLALDEKNNAAEMTAHAKAKR--RTDTEINGQQLRELAEQEPRVIALVMRQWLN 556

Query: 552 SEIED 556
            E + 
Sbjct: 557 KEHKS 561


>gi|298530643|ref|ZP_07018045.1| flagellar M-ring protein FliF [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298510017|gb|EFI33921.1| flagellar M-ring protein FliF [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 532

 Score =  388 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 132/555 (23%), Positives = 246/555 (44%), Gaps = 36/555 (6%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           + +++   + S +   R   +++A + L  I  F    FF+  P Y  L   L   D +R
Sbjct: 8   LQEKVTSLWSSSSVPQR---ILVAGLGLSVIAAFAFLMFFITRPDYRVLSSDLYPEDASR 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +   L   N+ +++ D+G++I VP+  V K R+ ++ +G+       G+ELFD     G 
Sbjct: 65  VVEILESENVRYQLEDDGTTILVPADQVHKMRLAISGEGVLR-GEGMGFELFD-DTGIGQ 122

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T F+Q +   RAL+GE+ARTI   S +  ARVH+VMP+   F +    P+AS++++  + 
Sbjct: 123 TDFVQNVNYQRALQGELARTISEFSEVEHARVHLVMPERSLFIEEETPPSASIVLQLRSG 182

Query: 183 SVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQ 238
              +    ++I +LV   V  +D   VT+ D++G++L   + +    +    L      Q
Sbjct: 183 QRLESSQIQSIVNLVVTGVEGMDSDRVTISDTSGRVLYEPQKDLLDGMSSTQLEYQLNFQ 242

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
            ++E  I   L  F G     + V A+L+ D +  R+ ++DPD  V RS + S +     
Sbjct: 243 RDLERRIEHMLTPFAGPGRVIAKVNADLDFDRRTTRQEIFDPDGSVVRSEQRSTEESSGG 302

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
           T   E              +    P + + T + +  +N+EI+ +          ++RLS
Sbjct: 303 TFMEEGVPE------PDFQQGFEGPATTQETSRSDRTTNFEISREEHNIVASVGSVDRLS 356

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           +AV+V+   +T+  G    +   D  +  I ++V  A G +  RGD+I ++S+DF   ++
Sbjct: 357 VAVLVDGQHVTDDAGEMVYEPLADEEMQRIQQLVERAVGFDQERGDSIEVSSVDFGAPEV 416

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
                 + + MD L+++F T    L+  +  LL   L +  +          + E     
Sbjct: 417 ----EPEPTLMDNLAQYFQTFGKPLLNALLVLLFLLLVVRPIIMTILKPKVAEEEGEEAE 472

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
            L       A+  G+   +   +              Q R+       S      + E N
Sbjct: 473 GLPEGGEREALAPGMSEEEVEGM------------QDQKRVEGIKVFAS-----QLAEEN 515

Query: 539 EERFAKILRKWARSE 553
            ++   +++KW + E
Sbjct: 516 FDQAFAVVKKWLKEE 530


>gi|317406225|gb|EFV86471.1| flagellar M-ring protein FliF [Achromobacter xylosoxidans C54]
          Length = 558

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 128/552 (23%), Positives = 215/552 (38%), Gaps = 77/552 (13%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            + + P Y  L+  L+  D   I  AL   N+ ++ +D G+++ VP+  V  AR+ LA+Q
Sbjct: 45  MWSSEPKYKVLFSNLDDRDGGAIVTALGTMNVPYKYNDTGTALLVPADRVYDARLQLASQ 104

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   S  G+EL D    FG + F ++I   R LEGE+AR+I+S+  +  ARVH+ MP 
Sbjct: 105 GLPRGGS-VGFELMDNA-RFGASQFAEQINYQRGLEGELARSIESMHTVQHARVHLAMPR 162

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    PTASV++              AI  LVA++VP L   +V+++D  G+LL+
Sbjct: 163 QSLFVRERQPPTASVLLNVYPGRSLSDAQVSAISWLVASSVPELTAENVSIVDQNGRLLS 222

Query: 219 ANEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
           A   E R +    + +V+  +      I   L   +G  N  +   AE++   ++    V
Sbjct: 223 APTGEGRGMDADQMRMVRETEQRTVERILTILNPLVGPGNVHAQASAEMDFSRREETSEV 282

Query: 278 YDPDSK----VERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN----- 328
           Y P+ +      RS + S+  QR   +  +       N P  + +               
Sbjct: 283 YRPNQEPGQAAIRSQQTSESNQRG-INPAQGVPGALSNQPPANAQAPIANPPQTQPPRPG 341

Query: 329 --------------------------TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
                                     +D+++  +NYE++            L+RLS+AVV
Sbjct: 342 QPQQQGQQQQQQTATGAGAQGAGGTVSDRRDATTNYEVDRTISHIKQPVGMLKRLSVAVV 401

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           VN  R  +       Q      L+++  +V  A G +  RGD++ + +  F +       
Sbjct: 402 VNYVRDKDGE----PQALPPEELSKLTNLVREAMGYSESRGDSLNLVNSQFNDGPPAVPM 457

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482
                 + +           L +LVG +L  +L     R                     
Sbjct: 458 WRDPEMISLFK-------TILAWLVGGVLALWLYRKVRR--------------SVGDYLY 496

Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542
           PP+   V       + I      QD+       + + N         R   M   +    
Sbjct: 497 PPVDPEVAEA----ERIEAQREAQDLARAKETDRYQDNLE-------RARTMANKDPRAV 545

Query: 543 AKILRKWARSEI 554
           A +LR W   + 
Sbjct: 546 AMVLRTWMTKDE 557


>gi|149194458|ref|ZP_01871555.1| flagellar M-ring protein [Caminibacter mediatlanticus TB-2]
 gi|149135633|gb|EDM24112.1| flagellar M-ring protein [Caminibacter mediatlanticus TB-2]
          Length = 559

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 141/569 (24%), Positives = 253/569 (44%), Gaps = 33/569 (5%)

Query: 2   AILDQLLQFFKSGTSLGR--TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           AI  Q++ FF       +      I++ V+++  ++   +       +Y  L+  L+  D
Sbjct: 5   AIFKQIIDFFNQLNKKQKYIIIGSIISVVLIITFLIVYNSSTTKKESNYAILFENLKPQD 64

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I   L +  I ++I +NG  I VP  +VGK R+ +AAQGLP SS   G+E+FDK NS
Sbjct: 65  AALIVQYLDKKQIPYKIPENG-IIEVPKDIVGKVRLDVAAQGLPKSSK-VGFEIFDK-NS 121

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           FG T F Q +  +RALEGE+A+TI+SI+ +  A+V+I +P    F +    PTAS++I+ 
Sbjct: 122 FGATDFEQRVKYLRALEGELAKTIESIAAVEEAKVNIAIPKESVFVENQTPPTASILIKL 181

Query: 180 INPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLSIV 234
                   K  E I+ LVAAAVP L   +V ++D  G  L  N        +L   L   
Sbjct: 182 RPNMTLTPKQIEGIKWLVAAAVPKLKPENVKIVDQYGNPLGENSEAVANSELLKAELLYK 241

Query: 235 QAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293
           + ++  +E  I+  +A  +G  N   + V  +++    + +  +Y PD+ V     L + 
Sbjct: 242 KRLEKALEDKISSLIAPIVGGKNKVVAKVSLDIDFSKVKSKATIYSPDNVVRSEQTLEES 301

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
               +  +         N+  V   K    + ++  +K E  +NYEI+T       D  K
Sbjct: 302 RIGIKPKEVGGVPGAVSNIGPVQGTK--NNQIVDKYNKTETTTNYEISTTIKDIKDDYPK 359

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           ++R++ AVVV+     +  G+       +  +  I  +V  A GI+ +RGD+++++S  F
Sbjct: 360 IKRITAAVVVDGYYKKDKDGKIKFVPLSEMQIKSIENLVKNAIGIDPKRGDSVSVSSFQF 419

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
            +       T     M ++S +     +   +L   +++       +             
Sbjct: 420 NQPTSNAPQTPVGKVMSMVSMYLGPFESIFKYLFLAIVLFVFYKKVINPFTQK------- 472

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR--INSYVSKQSDL-- 529
                +L  P          +  D   ++S+   I      ++ +  I+  ++++     
Sbjct: 473 -----MLETPVKEEEPIKEEIHIDEEEIESTYDKIKELKEKVEQQLGISGEINEEELKYE 527

Query: 530 ----RLLHMIEINEERFAKILRKWARSEI 554
               R+  M+E N E+ AK+L    + E 
Sbjct: 528 VLLERVTKMVEDNPEQVAKVLENLLKEEH 556


>gi|121997300|ref|YP_001002087.1| flagellar M-ring protein FliF [Halorhodospira halophila SL1]
 gi|121588705|gb|ABM61285.1| flagellar M-ring protein FliF [Halorhodospira halophila SL1]
          Length = 595

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 133/555 (23%), Positives = 234/555 (42%), Gaps = 34/555 (6%)

Query: 21  RILILASVILVPIMLFMAARFFVNSP-HYDNLYVKLEVSDVNRISVALSEANIDFRISDN 79
           R L L + +L    L +A  F+   P     LY  L   D   +  AL E  +     + 
Sbjct: 59  RKLGLGAGLLAVAGLGVAIFFWAQEPAELRTLYADLSSDDAAEVINALEEQGVRVEFDER 118

Query: 80  GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEI 139
              I VP + V +ARI LA++GLP  S   GYE+ +    FG++ FM+     RALE E+
Sbjct: 119 TGDIKVPENAVHRARIFLASEGLPRGSG-FGYEMLEDDPGFGVSEFMEHARFDRALETEL 177

Query: 140 ARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAA 197
           AR+I+++ G+V+ARVH+  P    F +      ASV++          +  E I HLVA+
Sbjct: 178 ARSIETLRGVVSARVHLDDPQESVFVRDRRDAKASVVLELDQDRQLPDRQVEGIIHLVAS 237

Query: 198 AVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255
           AV +L+ G+V+V+D  G+LLTA +   E     +   + + ++  I+  +   +   +G 
Sbjct: 238 AVSDLEHGNVSVVDHRGRLLTAEDEPTEATRSAQQFELTRRLEERIQRRVEDMVEPIIGP 297

Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV 315
           D  R+ V A LN D ++  E ++DP+S   RS ++S+ +                 +P  
Sbjct: 298 DRVRAQVSARLNFDERRQIEELFDPESSAIRSEQMSERS--------GGGGQWPIGIPGA 349

Query: 316 SDRKVPLPRSLENTD---------KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
              + P P +L+  +           +E  N+E+             ++RL++ V+V+  
Sbjct: 350 LTNQPPGPGTLDGEELEGGGGTPFSSDETRNWEVGRTLSEVQPAIGVIDRLTVGVLVDHR 409

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
            +    G    +   D  +  +  +V  A G ++ RGD +++ ++ F E         +V
Sbjct: 410 YVQNEDGEVVREALSDEEIQTLENLVQDAVGYDADRGDAVSVATVPFAEIVEPPDPPEEV 469

Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK--SILSPPP 484
              + +       + A    +G L+        + R+   +D    E GG     L  P 
Sbjct: 470 WEQEWVRDLIRLAVFA---AIGLLIYIVAIRPIVNRMLGGEDELDEESGGAETEGLERPA 526

Query: 485 ISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAK 544
             S  + G       AL  +       S   +    + +       +L ++E   E  A 
Sbjct: 527 GESLASPGRGQEGEAALQLAGISGEQLSDMRERPYEAKLQA-----VLELVENEPELAAN 581

Query: 545 ILRKWARSEIEDRYT 559
            ++ W   E + R  
Sbjct: 582 AVKAWL-DEDDKRKG 595


>gi|89899361|ref|YP_521832.1| flagellar M-ring protein FliF [Rhodoferax ferrireducens T118]
 gi|89344098|gb|ABD68301.1| flagellar M-ring protein FliF [Rhodoferax ferrireducens T118]
          Length = 588

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 132/566 (23%), Positives = 236/566 (41%), Gaps = 47/566 (8%)

Query: 12  KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71
           +  + L + + L +   ++V + + +          +  LY  L   D   I   L+  N
Sbjct: 43  QRFSGLDQGQRLRMGLGLVVFVAIGIIGLMMGRQAEWRVLYANLADKDGGAIVAQLTTMN 102

Query: 72  IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131
           + ++ +D G +I VP+  V   R+ LA+QGLP   + +G+E  D  N FG+T F + +  
Sbjct: 103 VPYKYADGGGAILVPADKVYDTRLRLASQGLPK-GAVAGFETMDA-NRFGMTQFQERLAF 160

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-- 189
            R LEGE+ R+IQ++S + +ARVH+ +P+   F +   +P+ASV++          A+  
Sbjct: 161 QRGLEGELTRSIQALSSVQSARVHLALPNQNGFFREQQKPSASVLVSLNAGRTLDRAQLA 220

Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN----EMERNILGKSLSIVQAIQHEIEMNI 245
            I HLV+++VP ++   V+VLD +GKLL+      +       + L  VQ ++      I
Sbjct: 221 GIVHLVSSSVPEMNASAVSVLDDSGKLLSTPPEGADGAGGGDAQQLQYVQQLEQLYSRRI 280

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305
              L   +G  N R+ V AEL+    +     + P+   + S   S+    SE+S     
Sbjct: 281 LDILEPVVGRGNARAQVTAELDFSQTESTSESHKPNQTPDSSAIRSQQV--SESSNGSGI 338

Query: 306 VTVEQNMPHVSDRKVPLPRSLENT------------------DKKEEQSNYEINTKSIAT 347
                 +P  +  K P P S                       ++E   NYE++      
Sbjct: 339 SGPPSGVPGATSNKPPGPSSAPINGAPQTLTAAGAGASAGAGGRRESIINYEVDKTVKVV 398

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
                 ++R+S AVVVN   +T+  G++         + ++  +V    G N  RGD++ 
Sbjct: 399 RGGTGIVKRISAAVVVNHQSVTDAKGKTTTTPLSAQQIEQMTALVRETVGFNKERGDSVN 458

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + +  F   ++     V + F          +  +L + +GTLL   L L  + R     
Sbjct: 459 LMNAPFTTERVV---PVDLPFWK--QSEIQDLARSLAWPLGTLLFGALVLLGVIRPALKT 513

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
            A+             P  SA +  L   ++ A + +     + S  L    +  ++   
Sbjct: 514 LAQS-----------QPRISASSHQLNAIESEAPERAQLAAPARSSELAGPTSGELALDD 562

Query: 528 DLRLLHMIEINEERFAKILRKWARSE 553
             +L      N    A I++ W   E
Sbjct: 563 ARKLTR---DNPAAVANIVKTWINGE 585


>gi|94269516|ref|ZP_01291482.1| Flagellar FliF M-ring protein [delta proteobacterium MLMS-1]
 gi|93451190|gb|EAT02103.1| Flagellar FliF M-ring protein [delta proteobacterium MLMS-1]
          Length = 511

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 132/543 (24%), Positives = 238/543 (43%), Gaps = 41/543 (7%)

Query: 20  TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN 79
           ++ +    V+ +     +A            L+  L   D   +   L E NI +R+SD 
Sbjct: 2   SQKITAGVVVALVFGGLVAMTTMAPKLDEQVLFANLSQEDAAEVVERLREMNIPYRLSDT 61

Query: 80  GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEI 139
           G++I VPS+ V + R+ LA +GLP      G+E+FD+V   G T F+  +   RAL+GE+
Sbjct: 62  GNAIMVPSNQVHETRLALAGEGLPRGGG-VGFEVFDEV-GLGTTDFVNRLNLQRALQGEL 119

Query: 140 ARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAA 197
           ARTI+    I  ARVHI  P    F +     TASV +R            ++I +LV+ 
Sbjct: 120 ARTIRQFEQIQEARVHIATPRESVFIEDEKPVTASVSLRMRGRDQLSQHQIQSIVNLVST 179

Query: 198 AVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255
           AVP L    +T++D+ G+LL     ++   + G  L   Q I+      +   L   +GV
Sbjct: 180 AVPGLSDESITLVDTAGRLLYRKRGDIGPVLSGSQLEYQQNIEESARRKVESMLEEVVGV 239

Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV 315
           +  R++V A+++ +   + E ++DP+ +V RS ++  +A +   +Q       +  +   
Sbjct: 240 NRVRASVTADIDFNRVNLTEEIFDPEEQVVRSEQVITEADQ-RGNQARGIPGAKGELATF 298

Query: 316 SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG--RLTEVLG 373
           +D       S  +  + +   NYEI+ ++  T      ++RLS+AV+V+    R+T+  G
Sbjct: 299 ADEGGGGADS--SYQRSDVTRNYEISRQTRQTQEMGGGIQRLSVAVMVDGTYERVTDEEG 356

Query: 374 RSADQ--GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDI 431
           R+  +   + +  +    +++S A G N  RGD + + SM F  + +       +     
Sbjct: 357 RTTMEYRPRSEEEMEYFERLISNAVGYNRDRGDQVEVVSMPFALSAITEPEEDPMDRWRE 416

Query: 432 LSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTT 491
           +++  A  +  L+   G +L     +    RL    D           L     S   T 
Sbjct: 417 MAQWLAMPLVYLLIAFGVML---FVVRPFLRLLAAKD-----------LEAKRASQRATV 462

Query: 492 GLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWAR 551
           G    +         D+    R L  +           R+  + + + +R A ++R+W R
Sbjct: 463 GRAEGEA----EDEDDLSMGPRGLSDQ----------ERIYRLAQSDPDRAADLVRRWLR 508

Query: 552 SEI 554
            E+
Sbjct: 509 EEV 511


>gi|253996299|ref|YP_003048363.1| flagellar M-ring protein FliF [Methylotenera mobilis JLW8]
 gi|253982978|gb|ACT47836.1| flagellar M-ring protein FliF [Methylotenera mobilis JLW8]
          Length = 546

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 125/532 (23%), Positives = 225/532 (42%), Gaps = 53/532 (9%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
             +   P Y  L+      D   I  AL + N+ ++ SD+G++I VP++ V + R+ LAA
Sbjct: 41  WLWSQQPDYRVLFSNYSDKDGGAIVAALEKLNVPYKFSDSGTAIMVPAAQVHQVRLKLAA 100

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
            GLP    N G+EL +    FG++ F++++   R LEGE+ R+IQSI+ +  AR+H+ +P
Sbjct: 101 DGLPKGG-NIGFELLE-NQKFGVSQFVEQVNFQRGLEGELERSIQSIAAVEVARIHLAIP 158

Query: 160 DMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
               F +   +PTASV++          +   A+ HLVA++VPNL   +VTV+D  G LL
Sbjct: 159 KPSVFVRDQQKPTASVLLNLRPGRTLDAQQVSAVVHLVASSVPNLPTTNVTVVDQNGNLL 218

Query: 218 TANE---MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           +        +N+  + L  V+ IQ  I   +   ++  +G  N R+   AE++   Q+  
Sbjct: 219 SDTTKKMGAKNLDPEQLKYVEEIQQSIVKRVESIISPIVGAKNVRAEASAEIDFSVQEQA 278

Query: 275 EIVYDPDSK----VERSIRLSKDAQRSETSQPESAVTVEQNMPH------------VSDR 318
              Y P+ +      RS++ ++   +S   +         N P                 
Sbjct: 279 AETYKPNQQPDAAAVRSMQSNET--KSANGETAGVPGALSNQPPPAATAPITTEANADAN 336

Query: 319 KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTE-VLGRSAD 377
             P   +     +K   +NYE++            ++RL++AVVVN   + +   G+ + 
Sbjct: 337 GQPASNATPTNTEKNLTTNYEVDKTVSYRQQPMGGVKRLNVAVVVNNMPVVDKKTGKVSY 396

Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437
           +    +   +IN +   A G N  RGD++ I +  F          + +       R   
Sbjct: 397 RALTVAEKTQINDLAMQAMGFNKERGDSLAIVNTPFAGEPQEVLPAIPLWENP---RVIE 453

Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497
            V + L F VG + +  +    L+ L N                  P  +AV  G  P+ 
Sbjct: 454 NVKDVLRFAVGVIALLIIYRKVLKPLLNK--------------LTTPPKAAVNQGEAPDA 499

Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549
            +++ +   +  +       +I +            + + N    A ++  W
Sbjct: 500 VVSISADGSN-AAEKPAYTQKIETA---------KQIAKDNPRMVASVVANW 541


>gi|224373126|ref|YP_002607498.1| flagellar MS-ring protein [Nautilia profundicola AmH]
 gi|223589285|gb|ACM93021.1| flagellar M-ring protein FliF [Nautilia profundicola AmH]
          Length = 561

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 140/568 (24%), Positives = 244/568 (42%), Gaps = 33/568 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVN----SPHYDNLYVKLEVS 58
           +  Q++ F K+     R +I+I+++++ +  ++     F          Y  L+  L   
Sbjct: 6   LFKQIIAFTKNLNK--RQKIVIISAIVALVAIISFLVVFNTTSSKTKTGYAILFDNLSSK 63

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
           D   I   L +  I + I ++G  I VP  +V K R+ +AAQGLP SS   G+ELFDK N
Sbjct: 64  DAALIVQYLDKKQIPYVIPEDG-VIEVPKDVVQKIRLDVAAQGLPKSSK-VGFELFDK-N 120

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178
           SFG+T F Q++  +RALEGE+ RTI+S+  + +A V+I +P    F +    PTASV+I+
Sbjct: 121 SFGITDFEQKVKYLRALEGELGRTIESLDAVESATVNIAIPKDSVFVEKQTPPTASVVIK 180

Query: 179 AINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLSI 233
                V   K  + I++LVAAAVP +   +V ++D  G LL  N+       +L   +  
Sbjct: 181 LKPNMVLTPKQIQGIKYLVAAAVPKMKPENVKIIDQYGNLLGENDELTQNNELLKAEIIY 240

Query: 234 VQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292
            + ++  +E  I   LA  +G  N   + V  +++    + +  +Y PD+ V     L +
Sbjct: 241 KKRMEKALEDKIVSILAPVIGGKNKVVAKVNLDIDFSQVKSKSTIYSPDNVVRSEQTLEE 300

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
                +  +         N+  V   K       +   K +  +NYEI+T          
Sbjct: 301 SRTGYKPKEVGGVPGAVSNVGPVQGTK--SNEVKDKYTKSQTTTNYEISTTVKDVKEPLA 358

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
           K++R++ AVVV+     +  G+          L  I  +V    G + +RGD+++++S  
Sbjct: 359 KIKRITAAVVVDGHYKEDKDGKKEFVPLTKLELTNIENLVKNTIGYDPKRGDSVSVSSFQ 418

Query: 413 FLENQLFNSGTVQVS-FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471
           F  N   N  T  V   M  +  +   +   L +L   +++       +          K
Sbjct: 419 FTGNSANNEPTSAVGKVMQSVQMYLGPISGILKYLFLAIVLFVFYKKVITPFTQKMLEVK 478

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL-- 529
            E   + +     I+          + +                Q  I+S V+++     
Sbjct: 479 IEEEPEYVKPDIEIN---------EEEVESTYDKIKELKEKVEQQLGISSDVNEEELKYE 529

Query: 530 ----RLLHMIEINEERFAKILRKWARSE 553
               R++ M E   E  AK+L    + E
Sbjct: 530 VLLDRIVKMAEEKTEEVAKVLENLIKEE 557


>gi|311105960|ref|YP_003978813.1| flagellar M-ring protein FliF [Achromobacter xylosoxidans A8]
 gi|310760649|gb|ADP16098.1| flagellar M-ring protein FliF [Achromobacter xylosoxidans A8]
          Length = 553

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 123/546 (22%), Positives = 214/546 (39%), Gaps = 70/546 (12%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            + + P Y  L+  L+  D   I  AL   N+ +R ++ G+++ VP+  V  AR+ LA+Q
Sbjct: 45  MWSSEPKYKVLFSNLDDRDGGAIVAALGTMNVPYRYNETGTAVLVPADRVYDARLQLASQ 104

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   S  G+EL D    FG + F ++I   R LEGE+AR+I+++  +  ARVH+ MP 
Sbjct: 105 GLPRGGS-VGFELMDNA-RFGASQFTEQINYQRGLEGELARSIEAMHTVQHARVHLAMPR 162

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    PTASV++              AI  LVA++VP L   +V+++D  G+LL+
Sbjct: 163 QSLFVRERQAPTASVLLNMHPGRSLSDAQVSAISWLVASSVPELTAENVSIVDQNGRLLS 222

Query: 219 ANEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
           A   E R +    +  V+ ++      I   L   +G  N  +   A+++   ++    V
Sbjct: 223 APMGEGRGMDADQMRFVREMEQRTVERILTILNPLVGPGNVHAQASADVDFARREETSEV 282

Query: 278 YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLP-------------- 323
           Y P+ +  ++   S+    S      +A  V   + + +      P              
Sbjct: 283 YRPNQEPGQAAVRSQQTSDSSQRGVNAAQGVPGALSNQAPANPQAPIANPPQPQPPRPGQ 342

Query: 324 ---------------RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368
                           +    ++++  +NYE++            L+RLS+AVVVN  R 
Sbjct: 343 PQQPANAQQQTSTQAATGNLNERRDATTNYEVDRTISHIKQPVGNLKRLSVAVVVNYMRD 402

Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSF 428
            +       Q      L ++  +V  A G +  RGD++ + +  F +             
Sbjct: 403 KDGE----LQPLPPEELNKLTNLVREAMGYSEPRGDSLNLVNSQFNDGPPPVPMWRDPEM 458

Query: 429 MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSA 488
           + +           L +LVG +L  +L    LRR                 L PP     
Sbjct: 459 ISLFK-------TILAWLVGGVLALWL-YRLLRRTVG------------DYLYPPVDPEQ 498

Query: 489 VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRK 548
                +     A D++        ++            +  R   M   +    A +LR 
Sbjct: 499 AEAERVEAAREAQDAARAKEVDRYQD------------NLERARTMANKDPRAVAMVLRT 546

Query: 549 WARSEI 554
           W   + 
Sbjct: 547 WMSKDE 552


>gi|170743231|ref|YP_001771886.1| flagellar MS-ring protein [Methylobacterium sp. 4-46]
 gi|168197505|gb|ACA19452.1| flagellar M-ring protein FliF [Methylobacterium sp. 4-46]
          Length = 539

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 132/542 (24%), Positives = 246/542 (45%), Gaps = 18/542 (3%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
             G  R+  + +V LV +  F      V+ P    LY  L + D   +   L    I + 
Sbjct: 10  KFGPARLAAMGAVTLVLVGFFAFVILRVSRPELGVLYADLSLQDAGAVIRDLEARGIRYE 69

Query: 76  ISDN-GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134
              + G +I  P + + + R+ LA +GLPS+    GYELFDK ++F  T+F+Q +  +RA
Sbjct: 70  TRGDLGQTILAPRADLPRLRMDLAGKGLPSAGG-VGYELFDKGDAFSTTTFVQNVNHLRA 128

Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHL 194
            EGE+AR+I++I  + AARVH+V+P+   F +    P+A+++++           A+RHL
Sbjct: 129 QEGELARSIRAIGRVQAARVHLVIPEKRLFNRDRELPSAAIVLKLAGDLDPGQVRAVRHL 188

Query: 195 VAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKALAAF 252
           VA++V  L    ++++D  G+LL   A   +   +        +++  +   +   +A  
Sbjct: 189 VASSVEGLKPERISIVDERGRLLADGAGRDDAQAVLGLDERQASLEQRLRAQVEGIVAGI 248

Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNM 312
           +G    R  V AEL+    + R   +DP+S+V RS +   +   S+    E+ V+V   +
Sbjct: 249 VGAGRARVQVAAELDPSRIESRSESFDPESRVVRSSQTRSETSASQ-GPGETGVSVGNEL 307

Query: 313 PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372
           P   +       + E ++K EE +NYEI+  +    ++  +++RLS+AVV++        
Sbjct: 308 PGARE-TAQANGTRETSNKNEETTNYEISRVTRTEVNEGGRIKRLSVAVVIDGSYQPGPD 366

Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDIL 432
           G+     +    L  I  +V  A G +  RGD + + ++ F +  +      +     +L
Sbjct: 367 GKPVYAPRSQEELDRITALVRTAVGYDKGRGDQVEVANLRFADTAVPAELPEEGLLASLL 426

Query: 433 SRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTG 492
                 V+  +   V  LL   + L  +R L       +           PP  +     
Sbjct: 427 KPTKEEVLRLVELAVLALLTLVVVLAVMRPLLRRVLPAEA----------PPEPALAAVA 476

Query: 493 LMPNDNIALDSSNQDIFSHSRNLQ--SRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
           ++P      + +     S +R L   ++IN  +  ++  R+  ++  N    A++LR W 
Sbjct: 477 VLPAAGAEGEGAPALPESPARQLVEFAKINGKIQAETIARVAEIVRQNPVETAEVLRGWI 536

Query: 551 RS 552
           + 
Sbjct: 537 QD 538


>gi|114330758|ref|YP_746980.1| flagellar M-ring protein FliF [Nitrosomonas eutropha C91]
 gi|114307772|gb|ABI59015.1| flagellar M-ring protein FliF [Nitrosomonas eutropha C91]
          Length = 547

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 133/563 (23%), Positives = 228/563 (40%), Gaps = 47/563 (8%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
            +          L   + L L       I LF     +  +P Y  LY  L   +   I 
Sbjct: 12  KKAFSQLDKIKQLPAQKKLGLMVAAAAVIALFAGTWLWSQTPDYRVLYANLSEQEGGAII 71

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
            AL + N+ ++ S++  SI VP + V + R+HLA QGLP  +  SG+E+ +    FG + 
Sbjct: 72  DALQKMNVPYQFSESSGSILVPVNQVHEVRLHLAGQGLPKGNL-SGFEILE-NQKFGSSQ 129

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           F++++   RALEGE+AR+IQS+S +  ARVH+ +     F +   +P+ SV++   +  +
Sbjct: 130 FLEQVNYQRALEGELARSIQSLSAVQGARVHLAIARPSVFTRERQQPSVSVLLNLHHGRM 189

Query: 185 Y--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA---NEMERNILGKSLSIVQAIQH 239
              +   AI HLV++++P+L + +VTV+D  G LL+    N+ME  +    L  VQ ++ 
Sbjct: 190 LSPEQVSAIVHLVSSSIPDLTVKNVTVVDQQGNLLSGQKENQMETGLDPGQLKYVQDMEQ 249

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS--IRLSKDAQRS 297
                I   L    G DN  + V A+++    +  E  Y P++  E S  +R  + ++  
Sbjct: 250 NFVRRIEAILTPVTGQDNVHAQVTADIDFSRIERSEETYRPNNNPEESAAVRSQQKSESV 309

Query: 298 ETSQPESA-VTVEQNMPHVSDRKV--------PLPRSLENTDKKEEQSNYEINTKSIATT 348
             SQP+        N P    +             ++     +KE  +NYE++       
Sbjct: 310 SISQPDGGVPGALSNRPPAPAQAPVETKEGQEETAQTTPTDTRKESTTNYEVDKTISHIR 369

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
               ++ RLS AVVVN        G   ++      + +I  +V  A G +  RGDT+T+
Sbjct: 370 QSTGQINRLSAAVVVNYRTRMNEEGNPINEPLSGEEIEKITALVKQAIGFSEARGDTLTV 429

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
           T+  F   +            D +        +    L+   +V F      R       
Sbjct: 430 TNSQFRLKEEILEELPLWKDPDTV----LLAKDIGKQLLIAAIVLFFLQKIFRPFLK--- 482

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
                        PP    A+T      D  A+               + I     +Q+ 
Sbjct: 483 -------NLLPPPPPAPVPALTAKDSEQDEAAI---------------NTIKVMTLEQNL 520

Query: 529 LRLLHMIEINEERFAKILRKWAR 551
            +   +        A +++ W  
Sbjct: 521 EKARLLAANEPAIVANVVKGWVS 543


>gi|33592502|ref|NP_880146.1| flagellar MS-ring protein [Bordetella pertussis Tohama I]
 gi|33572148|emb|CAE41692.1| flagellar M-ring protein FliF [Bordetella pertussis Tohama I]
 gi|332381920|gb|AEE66767.1| flagellar MS-ring protein [Bordetella pertussis CS]
          Length = 558

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 130/552 (23%), Positives = 220/552 (39%), Gaps = 77/552 (13%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  L+  L+  D   I  AL + N+ +R SDNGS++ VP+  V   R+ LA+Q
Sbjct: 45  MWSREPDYKVLFSNLDDRDGGAIVSALDQMNVPYRFSDNGSALLVPAERVYDTRMQLASQ 104

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   S  G+EL D    FG + F ++I   R LEGE+AR+I+++  +  ARVH+ MP 
Sbjct: 105 GLPRGGS-VGFELLDNT-RFGASQFAEQINYQRGLEGELARSIEAMHTVQHARVHLAMPR 162

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    PTASV++              A+  LVA++VP L   +V+++D  G+LL+
Sbjct: 163 QSLFVRDRQAPTASVLLNLYPGRSLSDAQVSAVAWLVASSVPELTAENVSIVDQNGRLLS 222

Query: 219 ANEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
           A   E R +    L  V+ ++      I   L   +G  N  +   AE++   ++    V
Sbjct: 223 APLGEGRGMDADQLRFVREMEQRTVERILTILNPLVGPGNVHAQASAEIDFARREETSEV 282

Query: 278 YDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPHVSDRKV-------------- 320
           Y P+ +  ++   S+    S  + P +A  V     N P  + +                
Sbjct: 283 YRPNQEPGQAAVRSQQTSDSRQTGPNAAQGVPGALSNQPPANAQAPIVNPPAVAGTPQQQ 342

Query: 321 -----------------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
                                +  + D+ +   NYE++            L+RLS+AVVV
Sbjct: 343 QQQRAQQQAAGATTTQTQQGAAAPSNDRHDATINYEVDRTISHVKQPVGMLKRLSVAVVV 402

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           N   L    G S  +      L ++  +V  A G +  RGD++ + +  F +  +     
Sbjct: 403 NY--LPNKEGES--EALPPEELNKLTNLVREAMGYSEARGDSLNLVNSQFNDTPVAVPLW 458

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
                        A +  AL +L G +L  +L    +R +                    
Sbjct: 459 RDPEL-------IAMIKTALGWLFGLILAFWL-YRKIRPV-------------------- 490

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH-MIEINEERF 542
                VT    P  +  + ++ +          +R       + +L+L   M   +    
Sbjct: 491 -----VTDYFYPQVDPEVAAAQRQEAEREAQAAARTREVNRYEDNLQLARDMAGKDPRAV 545

Query: 543 AKILRKWARSEI 554
           A +LR W   + 
Sbjct: 546 AMVLRSWMSKDE 557


>gi|293605027|ref|ZP_06687421.1| flagellar M-ring protein FliF [Achromobacter piechaudii ATCC 43553]
 gi|292816576|gb|EFF75663.1| flagellar M-ring protein FliF [Achromobacter piechaudii ATCC 43553]
          Length = 558

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 125/551 (22%), Positives = 212/551 (38%), Gaps = 75/551 (13%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            + + P Y  L+  L+  D   I  AL   N+ +R ++ G+++ VP+  V  AR+ LA+Q
Sbjct: 45  MWTSEPKYKVLFSNLDDRDGGAIVTALGTMNVPYRYNETGTALLVPADRVYDARLQLASQ 104

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   S  G+EL D    FG + F ++I   R LEGE+AR+I+++  +  ARVH+ MP 
Sbjct: 105 GLPRGGS-VGFELMDNA-RFGASQFAEQINYQRGLEGELARSIEAMHTVQHARVHLAMPR 162

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    PTASV++              AI  LVA++VP L   +V+++D  G+LL+
Sbjct: 163 QSLFVRERQAPTASVLLNVYPGRSMSDAQVSAISWLVASSVPELTAENVSIVDQNGRLLS 222

Query: 219 ANEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
           A   E R +    +  V+ ++      I   L   +G  N  +   A+++   ++    +
Sbjct: 223 APLGEGRGMDADQMRFVREMEQRTVERILTILNPLVGPGNVHAQASADVDFARREETSEI 282

Query: 278 YDPDSK----VERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN----- 328
           Y P+ +      RS + S   QR           +    P  +   +  P + +      
Sbjct: 283 YRPNQEPGQAAVRSQQTSDSTQRGVNPAQGVPGALSNQAPPNAQAPLANPPAAQPPRPGQ 342

Query: 329 -------------------------TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
                                     ++++  +NYE++            L+RLS+AVVV
Sbjct: 343 PPAAANAQQQQQQQQTGTQAATANLNERRDATTNYEVDRTISHIKQPVGNLKRLSVAVVV 402

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           N  R  +       Q      L ++  +V  A G +  RGD++ + +  F +        
Sbjct: 403 NYIRDKDGE----PQALPPEELNKLTNLVREAMGYSETRGDSLNLVNSQFNDGPPPLPMW 458

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
                        A     L +LVG +L  +L    +RR                 L PP
Sbjct: 459 RDPEM-------IALFKTILAWLVGLVLAFWL-YRKIRRSVT------------EYLYPP 498

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
                           A D++     S   +            +  R   M   +    A
Sbjct: 499 VDPEMAEAERQEAAREAQDAARTKELSRYED------------NLERARTMANKDPRAVA 546

Query: 544 KILRKWARSEI 554
            +LR W   + 
Sbjct: 547 MVLRTWMSKDE 557


>gi|311695217|gb|ADP98090.1| flagellar MS-ring protein [marine bacterium HP15]
          Length = 569

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 113/559 (20%), Positives = 228/559 (40%), Gaps = 37/559 (6%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
             F     L   R + L   +   + L +A   +   P+Y  +   L   +   ++  L 
Sbjct: 27  DLFMGFNRLNLLRQIGLMVGLAASVALGLAVVLWAQEPNYQPVVGDLSSYNPQDVTTILE 86

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
              ID+++     ++ VPS  V  AR+ LAA+G+ +     GYEL D+    G + FM+ 
Sbjct: 87  SNGIDYKMDPRTGALLVPSDQVYNARLKLAAEGV-TDRQTMGYELLDQERGLGTSQFMET 145

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV--YK 186
           I+  R LEGE+ART+ S+ G+  ARVH+ +P+   F +    P+ASV +          +
Sbjct: 146 ISYRRGLEGELARTVASMRGVRNARVHLAIPERSVFVRDARDPSASVFLEVFAGRRPEQE 205

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHEIEMN 244
              AI +LVA +VP +    VTV+D  G LLT  + +               ++  +   
Sbjct: 206 QINAIVNLVAGSVPMMSKEHVTVVDQNGNLLTGKQSQSGADQMADQYEYTAKVEERLTRR 265

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           +   +   +G   +R+ V A+L+  + +  E +++P+ +  RS R   +  R        
Sbjct: 266 VASLIGPIVGDGRYRAEVSADLDFSSVEQAEELFNPEQQAVRSERELTE--RRTAGAQGG 323

Query: 305 AVTVEQNMPHVSDRKVPLPRSLEN--------TDKKEEQSNYEINTKSIATTHDNYKLER 356
                 N P  +          +           + E   NYE++        +  +++R
Sbjct: 324 IPGALANQPPANATVPEQAAGGDGEQAAPAPVNVRSESTRNYEMDRTVSYRRQELGRVKR 383

Query: 357 LSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           +++A+ V+  ++ +   G  + +   +  L  ++ +V  A G ++ RGD++T+ +  F +
Sbjct: 384 VTVALAVDDMKVVDPQTGEVSYEPWPEQELQRLSMLVRDAVGYSAARGDSVTVMNTAFAQ 443

Query: 416 NQLFN----SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471
            +       +   Q  F D++ +  A ++  ++ L             L+ L      ++
Sbjct: 444 EESVEFEAPAFWEQPWFWDLMKQVLAGLVILVLVLGLL-------RPTLKSLSGGGQRER 496

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
           G   G            +  G      ++    +  +   +     ++N+         L
Sbjct: 497 GLDSGSGSGGGYGGLDDIEGGDELRKAMSAQD-DLLLPGATDGYDRQLNA---------L 546

Query: 532 LHMIEINEERFAKILRKWA 550
             +I  +  R A+++R+W 
Sbjct: 547 KGLIAEDPARVAQVMRQWV 565


>gi|85858817|ref|YP_461019.1| flagellar M-ring protein [Syntrophus aciditrophicus SB]
 gi|85721908|gb|ABC76851.1| flagellar M-ring protein [Syntrophus aciditrophicus SB]
          Length = 509

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 142/557 (25%), Positives = 239/557 (42%), Gaps = 57/557 (10%)

Query: 4   LDQLLQFFKSGTS----LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           ++  L+F+++       L   R   L  V  + + +  A  +F N P Y  L+  L   D
Sbjct: 1   MNSFLRFYENLRQSFVELPPARKWSLLFVAGMTLSVLAAMVYFANRPEYKVLFSHLSSED 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
            + I   L E  I + I+  G +I VP+  V + R+ LA  GLP      G+E+FD+   
Sbjct: 61  ASSILAKLQEKKISYEINSAGDTIFVPAEKVSELRLELAGSGLPQGGG-VGFEIFDQKT- 118

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
            G T F Q++   RAL+GE+ RTI+ +  I ++RVHI +P    F     +PTASV ++ 
Sbjct: 119 LGATEFEQQLNYRRALQGELGRTIKGLEEIESSRVHIALPRESLFVSEEKKPTASVTLKL 178

Query: 180 INPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIV 234
                      E I HLVA++V  L+ GDV ++D+ G +L+  + E  + G     +   
Sbjct: 179 KPGRSLSSSQIEGIAHLVASSVEGLNAGDVIIVDNKGNILSKLKGESGLSGLSGSQIEFQ 238

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
           + ++ +    I   L   +G       V A+L+    +  E  YDP+S V RS +   + 
Sbjct: 239 RNLEKDTAARIQSLLENVVGQGKAVVRVAADLDFRMTEKTEESYDPESPVVRSTQKQSEK 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
                             P  +D+           +K +E  NYEIN     T     ++
Sbjct: 299 ---------------SATPGKADQSTGQ-------EKLDEIINYEINKTVSKTVMPVGEI 336

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
            +LSIAV+V+   + +  G+   Q +    +  I ++V  + G ++ RGD +T+T+M F 
Sbjct: 337 RKLSIAVLVDGTYVKDKQGKEIYQPRSKKEIESIEELVRTSAGFSTARGDQVTVTNMPFK 396

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
           +    +       F + +S +F  +I  L+ LV  +LV F  +  L R       +K   
Sbjct: 397 KLDTEDMTGGNGWFGENISTYF-PLIKYLLLLVVVVLVFFFVIRPLIRGITGQVTEK--- 452

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
                         +    +P D I L    Q +   S   +      V       +  M
Sbjct: 453 -------------VMEKEALPEDIIELTGETQSLDLLSVKERELTEIEV-------VKKM 492

Query: 535 IEINEERFAKILRKWAR 551
              + + FA++LR W +
Sbjct: 493 AVEDSKSFAELLRNWLK 509


>gi|126665015|ref|ZP_01735998.1| flagellar M-ring protein [Marinobacter sp. ELB17]
 gi|126630385|gb|EBA01000.1| flagellar M-ring protein [Marinobacter sp. ELB17]
          Length = 569

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 119/560 (21%), Positives = 239/560 (42%), Gaps = 44/560 (7%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           F     L   R + L   +   + L +A   +   P+Y  +   L   +   ++  L  +
Sbjct: 30  FMGFNRLDLLRQIGLMVGLAASVALGVAVVLWAQEPNYQPVLGDLSSYNPQDVTSILDSS 89

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
            ID+++     ++ V +  V  AR+ LAA+G+ +     G+EL D+    G + +M+ I+
Sbjct: 90  GIDYKMDPRTGALLVVADQVYNARLRLAAEGV-TDQKTLGFELLDQDRGLGTSQYMETIS 148

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--A 188
             R LEGE+ARTI S+ G+ +ARVH+ +P+   F +    P+ASV +        +    
Sbjct: 149 YRRGLEGELARTIASMRGVRSARVHLAIPERSVFIRDAREPSASVFLEVFAGRRPEQEYI 208

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHEIEMNIN 246
            AI +LVA +VP +    VTV+D  G LLT  + E +             ++  +   ++
Sbjct: 209 AAIVNLVAGSVPMMTQSGVTVVDQNGNLLTGADAETDTDRMSDQYDYTDRVEERLSRRVS 268

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE-------- 298
             ++  +G   +R+ V A+L+  + +  E +++P+ +  RS R   + + +         
Sbjct: 269 SLISPIVGEGRYRTEVSADLDFSSVERAEELFNPEQQAVRSERQLTERRSAGDGPIGIPG 328

Query: 299 --TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
             ++QP +  TV Q     ++     P       + E   NYE++        +  +++R
Sbjct: 329 ALSNQPPANATVPQQANAGANADGAEPAPAPVDVRSESTRNYEMDRTVSYVRQELGRIKR 388

Query: 357 LSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           L++A+ V+  ++     G    +   +  L  ++ +V  A G ++ RGD++T+ +  F  
Sbjct: 389 LTVALAVDDIKVVNADTGAVTYEPWPEQELQRLSMLVRDAVGYSAARGDSVTVMNTAFAP 448

Query: 416 NQLFNSGTV----QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471
            Q+          Q  F D++ +  A ++  ++ L             L+ L + +    
Sbjct: 449 EQVLEYDAPRFWQQPWFWDLMKQLLAGLVVLVLVLGLL-------RPTLKNLASGNRGLA 501

Query: 472 GEVG-GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
           G    G   L       ++   +   D++ L  S             ++N+         
Sbjct: 502 GSGNEGYGDLDGIEGGDSLRRAMANQDDLLLPGSTG-------GYDRQLNA--------- 545

Query: 531 LLHMIEINEERFAKILRKWA 550
           L  +I  +  R A+++R+W 
Sbjct: 546 LKGLIAEDPARVAQVMRQWV 565


>gi|33601565|ref|NP_889125.1| flagellar MS-ring protein [Bordetella bronchiseptica RB50]
 gi|33576001|emb|CAE33081.1| flagellar M-ring protein [Bordetella bronchiseptica RB50]
          Length = 558

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 129/552 (23%), Positives = 220/552 (39%), Gaps = 77/552 (13%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  L+  L+  D   I  AL + N+ +R SDNGS++ VP+  V   R+ LA+Q
Sbjct: 45  MWSREPDYKVLFSNLDDRDGGAIVSALGQMNVPYRFSDNGSALLVPAERVYDTRMQLASQ 104

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   S  G+EL D    FG + F ++I   R LEGE+AR+I+++  +  ARVH+ MP 
Sbjct: 105 GLPRGGS-VGFELLDNT-RFGASQFAEQINYQRGLEGELARSIEAMHTVQHARVHLAMPR 162

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    PTASV++              A+  LVA++VP L   +V+++D  G+LL+
Sbjct: 163 QSLFVRDRQAPTASVLLNLYPGRSLSDAQVSAVAWLVASSVPELTAENVSIVDQNGRLLS 222

Query: 219 ANEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
           A   E R +    L  V+ ++      I   L   +G  N  +   AE++   ++    V
Sbjct: 223 APLGEGRGMDADQLRFVREMEQRTVERILTILNPLVGPGNVHAQASAEIDFARREETSEV 282

Query: 278 YDPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPHVSDRKV-------------- 320
           Y P+ +  ++   S+    S  + P +A  V     N P  + +                
Sbjct: 283 YRPNQEPGQAAVRSQQTSDSRQTGPNAAQGVPGALSNQPPANAQAPIVNPPAVAGTPQQQ 342

Query: 321 -----------------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
                                +  + D+ +   NYE++            L+RLS+AVVV
Sbjct: 343 QQQRAQQQAAGATTTQTQPGAAAPSNDRHDATINYEVDRTISHVKQPVGMLKRLSVAVVV 402

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           N   L    G S  +      L ++  +V  A G +  RGD++ + +  F +  +     
Sbjct: 403 NY--LPNKEGES--EALPPEELNKLTNLVREAMGYSEARGDSLNLVNSQFNDTPVAVPLW 458

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
                        A +  AL ++ G +L  +L    +R +                    
Sbjct: 459 RDPEL-------IAMIKTALGWMFGLILAFWL-YRKIRPV-------------------- 490

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH-MIEINEERF 542
                VT    P  +  + ++ +          +R       + +L+L   M   +    
Sbjct: 491 -----VTDYFYPQVDPEVAAAQRQEAEREAQAAARTREVNRYEDNLQLARDMAGKDPRAV 545

Query: 543 AKILRKWARSEI 554
           A +LR W   + 
Sbjct: 546 AMVLRSWMSKDE 557


>gi|260222430|emb|CBA31986.1| hypothetical protein Csp_D29860 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 579

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 132/562 (23%), Positives = 233/562 (41%), Gaps = 37/562 (6%)

Query: 12  KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71
           +  T+L + + + LA  I + + + +          +  LY  L   D   +   L+  N
Sbjct: 32  QRLTALDQGQRIRLALGIALFVAIAVVGLVMGRQAEWRVLYSNLADKDGGAVIAQLTTMN 91

Query: 72  IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131
           + ++ ++ G +I VP+  V   R+ LA+QGLP  S  SG+E+ +  N FG+T F + +T 
Sbjct: 92  VPYKYTEGGGAILVPADRVHDVRLKLASQGLPKGSV-SGFEMMEA-NRFGMTQFQERLTF 149

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAE 189
            R LEGE+ R+IQ++S + +ARVH+ +P+   F +   +P+ASV++              
Sbjct: 150 QRGLEGELTRSIQALSSVSSARVHLALPNQNGFFREQQKPSASVLLSLHPGRALDKGQLA 209

Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQAIQHEIEMNINKA 248
            I HLVA++VP ++   V+VLD TGKLL+AN +    +  + L  VQ I+      I   
Sbjct: 210 GIVHLVASSVPEMNPSAVSVLDDTGKLLSANPDAAAGVDAEQLQYVQQIEQLYSRRILDM 269

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVY----DPDSKVERSIRLSKDAQRSETSQPES 304
           L   +G  N ++ V AEL+    +     +     PDS   RS +L +    ++ + P  
Sbjct: 270 LEPLVGKQNVKAQVTAELDFSQTESTTESHKPNQTPDSGAVRSQQLVESTNGTQPTPPAG 329

Query: 305 AVTVEQNMPHVSD-------------RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
                 N P                        S  ++ KKE   NYE++     T    
Sbjct: 330 VPGATTNQPPAQPAAPINGQPQTLAANGQTAAGSTNSSSKKESIINYEVDKTIRVTKGAV 389

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
             ++R++ AVV+N   +T+  G +      ++ L ++  +V    G N  RGD++ + + 
Sbjct: 390 GAIKRINAAVVLNNQSVTDAKGVTTSVALTEAQLEKMTALVRETVGFNQDRGDSVNVVNA 449

Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471
            F   +   + T               +  +L + +GTL +  L L  + R       + 
Sbjct: 450 PFAPEKAEVNDTPV-----WRQPEVQELARSLAWPLGTLGLAALVLLGVIRPAMKALTQP 504

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
             V      +      A+         +   SS  +    S       ++          
Sbjct: 505 APVAEPLENNDVAQLDAIENDQPERPQLTGPSSANEAQQASPGELRLEDA---------- 554

Query: 532 LHMIEINEERFAKILRKWARSE 553
             +   N    A I++ W   E
Sbjct: 555 RKLTRDNPAAVANIVKAWMNGE 576


>gi|91776330|ref|YP_546086.1| flagellar M-ring protein FliF [Methylobacillus flagellatus KT]
 gi|91710317|gb|ABE50245.1| flagellar M-ring protein FliF [Methylobacillus flagellatus KT]
          Length = 586

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 125/554 (22%), Positives = 218/554 (39%), Gaps = 48/554 (8%)

Query: 36  FMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARI 95
            +    +   P Y  L+      D   I  AL + N+ +RI+D GS+I VP++ V   R+
Sbjct: 46  MVVFWLWSQKPEYRVLFSSYSDKDGGAIVAALEQMNVPYRIADGGSAILVPANHVHDVRL 105

Query: 96  HLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVH 155
            LA+QGLP    N G+EL +    FG++ F++++   R LEGE+ RTIQSI  + AAR+H
Sbjct: 106 RLASQGLPKGG-NIGFELLE-NQKFGVSQFVEQVNFQRGLEGELERTIQSIGAVQAARIH 163

Query: 156 IVMPDMGSFRKIGARPTASVMIRAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDST 213
           + MP    F +   +PTASVM+          +   AI HLVA++VP L   +VTV+D  
Sbjct: 164 LAMPKPTVFTRDQQKPTASVMLNLHPGRALDQRQVSAIVHLVASSVPELPTSNVTVVDQN 223

Query: 214 GKLLTANEMERN----ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
           G LL+ N  +      +    L  V  +Q  I   +   +A  +G  N  +   AE++  
Sbjct: 224 GNLLSDNGKDAGNHYQLDPTQLKYVDELQQNIARRVESIIAPLVGAKNVHAEASAEVDFS 283

Query: 270 TQQIREIVYDPDSKVERSIRLSKDAQRSET--------------SQPESAVTVEQNMPHV 315
             +    +Y P+   + +   S     S+T              +QP +  T     P  
Sbjct: 284 MVEQAAEIYKPNQAPDSAAIRSSQTNESQTLPGQGVGGVPGALTNQPPAPATAPIVAPGT 343

Query: 316 SDRKVPLPRSLEN---------------TDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
                     +                   ++   +NYE++            ++RL++A
Sbjct: 344 EPTTTTNANVVTTTTTTPPGTTVTTPVMNSERNTTTNYEVDKTIRYQQQPMGGIKRLTVA 403

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           VVVN  +  +  G+   +   D    +I+ +   A G N  RGD++++ +  F+      
Sbjct: 404 VVVNHKQEVDAQGKVITRPLTDDEKTQISDLAKQAMGFNEERGDSLSVVNGSFMPEIAEA 463

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
              V +        +       L   +  L++  L    LR L      ++ + G  + L
Sbjct: 464 FPEVPLWKDP---DNIEMAKEWLKNGLVLLVLYMLYRRFLRPLLRKLSPEEEKKGELAEL 520

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
                 + V+        ++                        +++      + + N +
Sbjct: 521 DEEDQDAIVS--------LSEGEGGMTGEEAGEEEGGAPAERTYQKNLESARKLAKENPK 572

Query: 541 RFAKILRKWARSEI 554
             A I+  W  S  
Sbjct: 573 VVASIVTNWVNSNE 586


>gi|30250023|ref|NP_842093.1| fliF; flagellar M-ring transmembrane protein [Nitrosomonas europaea
           ATCC 19718]
 gi|30139130|emb|CAD85994.1| fliF; flagellar M-ring transmembrane protein [Nitrosomonas europaea
           ATCC 19718]
          Length = 548

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 121/565 (21%), Positives = 220/565 (38%), Gaps = 50/565 (8%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
            +          L   + L L       I L      +  SP Y  LY  L   +   I 
Sbjct: 12  KKTFSQLDKIKQLPTQKKLGLMVAAAAVIALIAGTWLWSQSPDYRVLYASLSDQEGGAII 71

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
            AL + N+ ++ S++G SI +P+S V + R+ LA QGLP  +  SG+E+ +    FG + 
Sbjct: 72  EALQKMNVPYQFSESGGSILIPASQVHEVRLRLAGQGLPKGNL-SGFEILE-NQKFGSSQ 129

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           F++++   RALEGE++R+IQS+S +  ARVH+ +     F +   +P  SV++      +
Sbjct: 130 FLEQVNYQRALEGELSRSIQSLSAVQGARVHLAIAKPSVFTRERPQPRVSVLLNLHPGRM 189

Query: 185 Y--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA---NEMERNILGKSLSIVQAIQH 239
              +   AI HL+++++P++ + +VTV+D  G LL+    N+ E  +    L  VQ ++ 
Sbjct: 190 LSTEQVSAIVHLISSSIPDMPVKNVTVVDQQGNLLSGQKDNQAETGLDPGQLKYVQDMEQ 249

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS-----KVERSIRLSKDA 294
                I   L    G DN  + V A+++    +  E +Y P++        RS + S+  
Sbjct: 250 NFVRRIEAILTPITGEDNVHAQVTADVDFSRIERAEEIYKPNNNPAEAAAVRSQQQSESV 309

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV--------PLPRSLENTDKKEEQSNYEINTKSIA 346
             S+            N P                  ++     ++E  +NYE++     
Sbjct: 310 SISQP--EGGVPGALSNRPPAPAEAPIEAKQSSEAAAKTTPTDTRRESTTNYEVDKTISH 367

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
           T     ++ RLS AVV+N     +  G  A++      + +I  +V    G +  RGDT+
Sbjct: 368 TRQATGRINRLSAAVVINYRTKLDTEGNPANEPLSGEEIEKITALVKQTIGFDETRGDTL 427

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
           T+T+  F                D +          L+  +    +  +    LR L   
Sbjct: 428 TVTNSQFNLKGDSLEELPPWKDPDTVLLAKDIGKQLLIAAIVLFFLQKIFRPFLRNLLPP 487

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
                                                + ++   HS    S +     ++
Sbjct: 488 PPPPPVPA----------------------------LAVKNGLEHSEAEVSTVRVVTLEE 519

Query: 527 SDLRLLHMIEINEERFAKILRKWAR 551
           +  +   +        A +++ W  
Sbjct: 520 NLEKARLLAVTEPAIVANVVKGWVS 544


>gi|329888114|ref|ZP_08266712.1| flagellar M-ring protein FliF [Brevundimonas diminuta ATCC 11568]
 gi|328846670|gb|EGF96232.1| flagellar M-ring protein FliF [Brevundimonas diminuta ATCC 11568]
          Length = 545

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 142/548 (25%), Positives = 234/548 (42%), Gaps = 12/548 (2%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
           F ++    G  R+  +  V      + +A    V       LY  L++ + + IS AL +
Sbjct: 4   FTEALKRFGIGRLAAILGVAAGVAAVLVAVMLRVGQAPDALLYSNLDLREASEISAALDQ 63

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
           A I +    +GS+I V    VG AR+ LA +GL +S S  GYE+FD  +  G T F Q +
Sbjct: 64  AGIKYSSKGDGSTIFVSRDEVGTARLMLAGKGLVTSGS-VGYEIFDNQSVLGQTEFQQNL 122

Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS-VYKSA 188
              RAL+GE+ARTI S+ GI +ARVHI MP    F+     PTA+V++            
Sbjct: 123 NEQRALQGELARTIMSMRGISSARVHITMPRREMFQAAAIDPTAAVVVGLSGRDLSADQV 182

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQA-IQHEIEMNINK 247
            AIR++VA++VPNL    VTV D   + L A   +      +    +A  + +++  I  
Sbjct: 183 RAIRNVVASSVPNLKPDKVTVTDQANRTLAAGSEDTGFTSATAEASKASTEAQMQARIKD 242

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVT 307
            +   +G    R  V A+++      +E  +DPD +V RS   +    +  T Q +  VT
Sbjct: 243 IVEGVVGAGAARVQVTADIDHSRSTTQEQKFDPDGQVVRSTSTNGSQSQDTTGQQDGGVT 302

Query: 308 VEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367
              N+P           S     +  E +NYEI+  +  T  +  ++++LS++V V+   
Sbjct: 303 ATNNIPGGQAPNTTPIGST--NSENTETTNYEISNTTTTTVKEPGEVKKLSVSVAVDGKY 360

Query: 368 LTEVLGR--SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425
                G+       +    + +I  +V+AA GI+  RGD + + ++ F        G  +
Sbjct: 361 TPAADGKGEPTYAARTAEEVQQIKALVAAAVGIDETRGDKLEVVNVRFSREPSAAPGAEE 420

Query: 426 VSFMDILSRH-FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPP 484
            S M    ++     +  L+  V   ++ F  L  L +            G   I     
Sbjct: 421 GSSMFAFDKNDIMRGVELLILAVTGFVLVFFVLRPLLKAATGSGGAPALAGAGGIPVTAL 480

Query: 485 ISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAK 544
            +  V  G +P     L   +       R   +RI   V   S  ++   ++ + E    
Sbjct: 481 DTQIV-GGTLPGGAPMLAGPSD---MEQRIDIARIEGQVKASSIKKVADFVDSHPEESTA 536

Query: 545 ILRKWARS 552
           ILR W   
Sbjct: 537 ILRSWMHE 544


>gi|254563420|ref|YP_003070515.1| basal-body MS biosynthesis protein [Methylobacterium extorquens
           DM4]
 gi|254270698|emb|CAX26702.1| flagellar biosynthesis; basal-body MS(membrane and
           supramembrane)-ring and collar protein [Methylobacterium
           extorquens DM4]
          Length = 540

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 144/541 (26%), Positives = 254/541 (46%), Gaps = 13/541 (2%)

Query: 15  TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF 74
           T LG  RI  +A+V L  +  F      V+ P    L+  L + D + +   L    I +
Sbjct: 9   TKLGPARIAAMAAVTLTLVGFFAFVILRVSRPDMGVLFSDLSLQDSSSVIRELDARGITY 68

Query: 75  RISDN-GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
                 G ++  P + + K R+  A +GLPS     GYE+FDK ++F  TSF+Q +  +R
Sbjct: 69  ETKGEMGQTVLAPRADLAKLRMDFAGKGLPSQGG-IGYEIFDKGDAFSSTSFVQNVNHLR 127

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRH 193
           A+EGE+AR+I++I  + AARVH+V+P+   F +    P+A+++++ +         AIRH
Sbjct: 128 AMEGELARSIRAIGRVQAARVHLVIPERRLFERDREAPSAAIVVKLMGDLDASQVRAIRH 187

Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEMNINKALAA 251
           L A+AV  L    V+++D  G+LL       E +  G        I+  +   I + +A 
Sbjct: 188 LAASAVEGLKPERVSIVDERGRLLADGARGAEADGAGALEERQAGIERRMRSQIEEIVAG 247

Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311
            +G    R  V AEL+++  + R   +DP+S+V RS +   +   S T   E  VTV   
Sbjct: 248 IVGQGRARVQVTAELDLNRVESRSESFDPESRVVRSTQTRSEN--SLTGGAEGQVTVGNE 305

Query: 312 MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV 371
           +P  +  + P P+  +++ K EE +NYEI+  +   T +  +L+RLS+AV+V+       
Sbjct: 306 LPGANQNQ-PAPQQKDSSQKNEETTNYEISRVTKVETLEGGRLKRLSVAVLVDGVYAPGA 364

Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDI 431
            G+ A Q + D+ +A I  +V  A G +  RGD + + ++ F E       +        
Sbjct: 365 DGKPAYQPRSDAEIARITALVRTAVGYDKVRGDQVEVVNLRFAETPTTAEFSEPGLIQSF 424

Query: 432 LSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTT 491
           LS     V+  +   V +LL   + +  +R L          +          ++ A   
Sbjct: 425 LSPTKEEVMRLVELTVLSLLTLVVLMAVVRPLLRRVLESDAPMALAGPAGALALAGAGGG 484

Query: 492 GLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWAR 551
                  +  +S+N+ + S      ++IN  +  ++  R++ M+  +     ++LR W  
Sbjct: 485 EAPVEIAVRENSTNKFLES------AKINGQIQAETVERVVDMVRASPTETVEVLRNWIH 538

Query: 552 S 552
            
Sbjct: 539 D 539


>gi|292669732|ref|ZP_06603158.1| flagellar M-ring protein FliF [Selenomonas noxia ATCC 43541]
 gi|292648529|gb|EFF66501.1| flagellar M-ring protein FliF [Selenomonas noxia ATCC 43541]
          Length = 526

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 132/562 (23%), Positives = 247/562 (43%), Gaps = 53/562 (9%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++ L  +K      R R ++L S + + +++F  + ++ + P    L+  +E  D   ++
Sbjct: 6   ERGLAMWKRFDK--RQRYIMLGSALAILVLIFGLSFWYGSKPDMVPLFTDMETKDAGEVA 63

Query: 65  VALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
             L E+ I + I +N  G++I VP++ V +AR++LA QGLP  +   G+E+FD  +  G+
Sbjct: 64  KQLRESKISYEIQENKSGTTILVPTTNVHEARLNLATQGLPRGNK--GFEIFD-DSKLGV 120

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN- 181
           T F   +  ++AL+GE+ RTI+ I  +  ARVHIV+P+   ++K     TAS+M+R    
Sbjct: 121 TEFQNRVNYLQALQGELTRTIEQIEAVEKARVHIVLPEDSLYKKEEKPATASIMLRLKPN 180

Query: 182 -PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-----GKSLSIVQ 235
                K  + I +L A +V  L   ++T++D TGK+L   + +            L + +
Sbjct: 181 AELTKKEIKGIVNLAAHSVKGLMPENITIVDDTGKILNDPDDQDENAIGVKTLTQLDMTR 240

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSK 292
            +Q  IE  +   L   LG     + V  EL+ D +      + P   D+ + RS +   
Sbjct: 241 KVQDNIEKKVQSLLDQTLGEGRAFARVSVELDFDDRLTDRQTFTPVVDDAGIIRSQQDIS 300

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
           ++    ++ P     V+ N+P   +++          +KKE   NYEIN +         
Sbjct: 301 ESYVGNSTNPGGPAGVQSNVPGYVEQEANANA---EYEKKESTKNYEINEERQHVIASPG 357

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
            + RL++AV+VN                       I + VS+A GIN  RGDTI++  + 
Sbjct: 358 SIRRLTVAVLVNDDV-------------TQPQQESILRTVSSAAGINPTRGDTISVEPLP 404

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F           + +  D   R F   +   + ++  ++   L     +RL   + A++ 
Sbjct: 405 FSTEAAERRAAEEQAEKDRQDRIFYAQVGLALLIIALIVGGILMYRRKKRLER-EAAEEA 463

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
           +   ++  +    ++                   +    S   Q ++N  ++      LL
Sbjct: 464 QRIEEARAAEERAAAIAAG-------------EVEEEDLSEEEQHQMNQKLA------LL 504

Query: 533 HMIEINEERFAKILRKWARSEI 554
            +I+   E  A +++ W   E 
Sbjct: 505 ALIDSKPEEVALLVKTWLSEEE 526


>gi|218532348|ref|YP_002423164.1| flagellar MS-ring protein [Methylobacterium chloromethanicum CM4]
 gi|218524651|gb|ACK85236.1| flagellar M-ring protein FliF [Methylobacterium chloromethanicum
           CM4]
          Length = 540

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 144/541 (26%), Positives = 254/541 (46%), Gaps = 13/541 (2%)

Query: 15  TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF 74
           T LG  RI  +A+V L  +  F      V+ P    L+  L + D + +   L    I +
Sbjct: 9   TKLGPARIAAMAAVTLTLVGFFAFVILRVSRPDMGVLFSDLSLQDSSSVIRELDARGITY 68

Query: 75  RISDN-GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
                 G ++  P + + K R+  A +GLPS     GYE+FDK ++F  TSF+Q +  +R
Sbjct: 69  ETKGEMGQTVLAPRADLAKLRMDFAGKGLPSQGG-IGYEIFDKGDAFSSTSFVQNVNHLR 127

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRH 193
           A+EGE+AR+I++I  + AARVH+V+P+   F +    P+A+++++ +         AIRH
Sbjct: 128 AMEGELARSIRAIGRVQAARVHLVIPERRLFERDREAPSAAIVVKLMGDLDASQVRAIRH 187

Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEMNINKALAA 251
           L A+AV  L    V+++D  G+LL       E +  G        I+  +   I + +A 
Sbjct: 188 LAASAVEGLKPERVSIVDERGRLLADGARGAEADGAGALEERQAGIERRMRSQIEEIVAG 247

Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311
            +G    R  V AEL+++  + R   +DP+S+V RS +   +   S T   E  VTV   
Sbjct: 248 IVGQGRARVQVTAELDLNRVESRSESFDPESRVVRSTQTRSEN--SLTGGAEGQVTVGNE 305

Query: 312 MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV 371
           +P  +  + P P+  +++ K EE +NYEI+  +   T +  +L+RLS+AV+V+       
Sbjct: 306 LPGANQNQ-PAPQQKDSSQKNEETTNYEISRVTKVETLEGGRLKRLSVAVLVDGVYAPGA 364

Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDI 431
            G+ A Q + D+ +A I  +V  A G +  RGD + + ++ F E       +        
Sbjct: 365 DGKPAYQPRSDAEIARITALVRTAVGYDKVRGDQVEVVNLRFAETPTAAEFSEPGLIQSF 424

Query: 432 LSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTT 491
           LS     V+  +   V +LL   + +  +R L          +          ++ A   
Sbjct: 425 LSPTKEEVMRLVELTVLSLLTLVVLMAVVRPLLRRVLESDAPMALAGPAGALALAGAAGG 484

Query: 492 GLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWAR 551
                  +  +S+N+ + S      ++IN  +  ++  R++ M+  +     ++LR W  
Sbjct: 485 EAPVEIAVRENSTNKFLES------AKINGQIQAETVERVVDMVRASPTETVEVLRNWIH 538

Query: 552 S 552
            
Sbjct: 539 D 539


>gi|304438472|ref|ZP_07398412.1| flagellar M-ring protein FliF [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304368555|gb|EFM22240.1| flagellar M-ring protein FliF [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 526

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 132/562 (23%), Positives = 243/562 (43%), Gaps = 53/562 (9%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++ L  +K      R R ++L S + + +++F  + ++ + P    L+  +E  D   ++
Sbjct: 6   ERSLALWKRFDK--RQRYIMLGSALAILVLVFGLSFWYGSKPDMVPLFTDMETKDAGEVA 63

Query: 65  VALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
             L E+ I + I +N  G++I VP++ V +AR++LA QGLP  +   G+E+FD  +  G+
Sbjct: 64  NQLRESKISYEIQENKSGTTILVPTANVHEARLNLAVQGLPHGNK--GFEIFD-DSKLGV 120

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN- 181
           T F   +  ++AL+GE+ RTI+ I  +  ARVHIV+P+   ++K     TAS+M+R    
Sbjct: 121 TEFQNRVNYLQALQGELTRTIEQIEAVDKARVHIVLPEDSLYKKEEKPATASIMLRLKPH 180

Query: 182 -PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGK---SLSIVQ 235
                K  + I +L A ++  L   ++T++D TGK+L   +   E+ +  K    L + +
Sbjct: 181 AELTKKEIKGIVNLAAHSIKGLTPENITIVDDTGKILNDPDDQDEKGLGAKTITQLEMTR 240

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSK 292
            +Q  IE  +   L   LG     + V  EL+ D +      + P   D+ + RS +   
Sbjct: 241 KVQDNIEKKVQTLLDQTLGEGRAFARVSVELDFDDRLTDRQTFTPVVDDAGIIRSQQDIS 300

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
           ++    ++ P     V+ N+P   +++     +    +KKE   NYEIN +         
Sbjct: 301 ESYNGSSTNPGGPAGVQSNVPGYVEQESNANAA---YEKKESTKNYEINEERQHVIASPG 357

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
            + R+++AV+VN                       I + VS+A GIN  RGDTI++  + 
Sbjct: 358 SIRRMTVAVLVNDDV-------------TQPQQESILRTVSSAAGINQTRGDTISVEPLP 404

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F             +  D   R F   + A++ ++  ++   L     +RL         
Sbjct: 405 FSTEAADRRAAELQAEKDRQDRIFYMQVGAVLLIIALIVAAILMYRRKKRLER------- 457

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
                         +A     +  + +A + +                        L LL
Sbjct: 458 -------------EAAEEAKRLEEERLAEERAAAIAAGEVEEEDLSEEEQQQMNEKLALL 504

Query: 533 HMIEINEERFAKILRKWARSEI 554
            +I+   E  A +++ W   E 
Sbjct: 505 ALIDSKPEEVALLVKTWLTEEE 526


>gi|120613031|ref|YP_972709.1| flagellar M-ring protein FliF [Acidovorax citrulli AAC00-1]
 gi|120591495|gb|ABM34935.1| flagellar M-ring protein FliF [Acidovorax citrulli AAC00-1]
          Length = 566

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 132/568 (23%), Positives = 239/568 (42%), Gaps = 48/568 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            +  ++L R++ L   + I + +   +AA      P Y  L+  L   D   I   LS  
Sbjct: 21  LQRFSALDRSKRLRFGAGIALLVAAVVAAVVLNRQPDYKVLFSNLSDKDGGAIVAQLSTM 80

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           N+ ++ S+ G +I VP+  V   R+ LA QGLP  S  +G+EL +  N FG+T F + + 
Sbjct: 81  NVPYKYSEGGGAILVPAERVHDVRLRLATQGLPKGSV-TGFELME-TNRFGVTQFQERLN 138

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS--VYKSA 188
             R LEGE+ R+IQ++S + +ARVH+ +P+   F +   +P+ASV++             
Sbjct: 139 FQRGLEGELTRSIQALSSVQSARVHLALPNQNGFFREQQKPSASVLLSLYPGRFLDRTQL 198

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKSLSIVQAIQHEIEMNI 245
             I HLVA++VP +    V+VLD TGKLL+ +        I  + LS VQ I+ +    I
Sbjct: 199 AGIVHLVASSVPEMSPSAVSVLDDTGKLLSQSPDTAAGSAIDAQQLSYVQQIEQQYTRRI 258

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVY----DPDSKVERSIRLSKDAQRSETSQ 301
              L   +G +N ++ V AE++    +     +     PDS   RS ++ + +  ++ +Q
Sbjct: 259 LDILEPVVGKNNVKAQVTAEVDFSQSEQTSEQHRPNQTPDSSAVRSQQVVESSGGTQGNQ 318

Query: 302 PE-SAVTVEQNMPHV-----------SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
           P         N P             +       +      K+E  +NYE++     T  
Sbjct: 319 PPAGVPGAASNQPPQPSTAPINGANPAPTAGNGQQGQAAGSKRESITNYEVDKTVRVTRA 378

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSAD-QGKIDSYLAEINKIVSAATGINSRRGDTITI 408
            +  ++R+S AVVVN   + +  G++   +      + ++  +V    G +  RGD++ I
Sbjct: 379 GSGAIKRVSAAVVVNYQAIADAAGKAPQAKAFTPEQIEQMTALVRETIGYSKDRGDSVNI 438

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
            +  FL +             +++    +      + L   L++  L   A++ ++    
Sbjct: 439 MNTQFLVDNTPAVELPLWKQPEMIELAKSLGWPVGMSLFAALILLGLVRPAIKGMNQPPA 498

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
                  G+ +        A+         +A  +  +D+                    
Sbjct: 499 PAAAPASGRQV-------DAIEADEPERPALAAPAKPEDLIQTPE--------------Q 537

Query: 529 LRLLH---MIEINEERFAKILRKWARSE 553
           +RL     + + N    A IL+ W   E
Sbjct: 538 MRLEEARVLAKENPVAVANILKVWVNGE 565


>gi|240140910|ref|YP_002965390.1| flagellar biosynthesis; basal-body MS(membrane and
           supramembrane)-ring and collar protein [Methylobacterium
           extorquens AM1]
 gi|240010887|gb|ACS42113.1| flagellar biosynthesis; basal-body MS(membrane and
           supramembrane)-ring and collar protein [Methylobacterium
           extorquens AM1]
          Length = 540

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 144/541 (26%), Positives = 254/541 (46%), Gaps = 13/541 (2%)

Query: 15  TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF 74
           T LG  RI  +A+V L  +  F      V+ P    L+  L + D + +   L    I +
Sbjct: 9   TKLGPARIAAMAAVTLTLVGFFAFVILRVSRPDMGVLFSDLSLQDSSSVIRELDARGITY 68

Query: 75  RISDN-GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
                 G ++  P + + K R+  A +GLPS     GYE+FDK ++F  TSF+Q +  +R
Sbjct: 69  ETKGEMGQTVLAPRADLAKLRMDFAGKGLPSQGG-IGYEIFDKGDAFSSTSFVQNVNHLR 127

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRH 193
           A+EGE+AR+I++I  + AARVH+V+P+   F +    P+A+++++ +         AIRH
Sbjct: 128 AMEGELARSIRAIGRVQAARVHLVIPERRLFERDREAPSAAIVVKLMGDLDASQVRAIRH 187

Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEMNINKALAA 251
           L A+AV  L    V+++D  G+LL       E +  G        I+  +   I + +A 
Sbjct: 188 LAASAVEGLKPERVSIVDERGRLLADGARGAEADGAGALEERQAGIERRMRSQIEEIVAG 247

Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311
            +G    R  V AEL+++  + R   +DP+S+V RS +   +   S T   E  VTV   
Sbjct: 248 IVGQGRARVQVTAELDLNRVESRSESFDPESRVVRSTQTRSEN--SLTGGAEGQVTVGNE 305

Query: 312 MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV 371
           +P  +  + P P+  +++ K EE +NYEI+  +   T +  +L+RLS+AV+V+       
Sbjct: 306 LPGANQNQ-PAPQQKDSSQKNEETTNYEISRVTKVETLEGGRLKRLSVAVLVDGVYAPGA 364

Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDI 431
            G+ A Q + D+ +A I  +V  A G +  RGD + + ++ F E       +        
Sbjct: 365 NGKPAYQPRSDAEIARITALVRTAVGYDKVRGDQVEVVNLRFAETPTAAEFSEPGLIQSF 424

Query: 432 LSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTT 491
           LS     V+  +   V +LL   + +  +R L          +          ++ A   
Sbjct: 425 LSPTKEEVMRLVELTVLSLLTLVVLMAVVRPLLRRVLESDAPMALAGPAGALALAGAAGG 484

Query: 492 GLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWAR 551
                  +  +S+N+ + S      ++IN  +  ++  R++ M+  +     ++LR W  
Sbjct: 485 EAPVEIAVRENSTNKFLES------AKINGQIQAETVERVVDMVRASPTETVEVLRNWIH 538

Query: 552 S 552
            
Sbjct: 539 D 539


>gi|260886631|ref|ZP_05897894.1| flagellar M-ring protein FliF [Selenomonas sputigena ATCC 35185]
 gi|330839537|ref|YP_004414117.1| flagellar M-ring protein FliF [Selenomonas sputigena ATCC 35185]
 gi|260863774|gb|EEX78274.1| flagellar M-ring protein FliF [Selenomonas sputigena ATCC 35185]
 gi|329747301|gb|AEC00658.1| flagellar M-ring protein FliF [Selenomonas sputigena ATCC 35185]
          Length = 529

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 122/561 (21%), Positives = 241/561 (42%), Gaps = 50/561 (8%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++ L+ + + +   R R +I+ +  LV I +   +  +   P    L+  +E  D   ++
Sbjct: 6   ERYLELWNNYSK--RQRYMIIGAAALVFIAIVAGSIIYGGKPDMVPLFTNMEAKDAGEVA 63

Query: 65  VALSEANIDFRISDNG--SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
             L E  +++ I + G  ++I VP+  V   R+ LAA+GLP  +   G+ELFD  +  G+
Sbjct: 64  AKLKENKVNYEIQEGGQGTTILVPAKSVDSTRLDLAAEGLPRGNK--GFELFD-DSKLGV 120

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T F  ++  ++AL+GE+ RTI+ I  +  ARVHIV+P+   ++K     TAS+M++    
Sbjct: 121 TEFQNKVNYLQALQGELTRTIEQIDAVEKARVHIVLPEDSLYKKNEKPATASIMLKLKAN 180

Query: 183 SVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI-----LGKSLSIVQ 235
                K  + I +L A +V  L   ++T++D +GK+L   +   +          + + +
Sbjct: 181 MQLSKKEVKGIVNLAAHSVQGLTPENITIVDESGKILNDPDENGDDGVGQKTLTQMEMTK 240

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSK 292
            +Q  ++ N+   L A LG       +  EL+ D +     +Y P   +S + RS + + 
Sbjct: 241 KVQDNLQKNVQSLLDASLGEGKSFVRISVELDFDQKMTDSQIYTPVVDESGIVRSQQTTS 300

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
           ++    ++QP      + N+P   ++      S    ++KE  +NYE+N +         
Sbjct: 301 ESYAGTSTQPGGPAGTQSNVPGYVEQN---NNSQAQYERKENTTNYEVNEEKRKVVASPG 357

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
            + RL++AV+VN                  +    I + V +A GIN  RGDT+++  + 
Sbjct: 358 SIRRLTVAVLVNDDV-------------TQAQQESILRSVRSAAGINPDRGDTVSVEPLP 404

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F           + +  D L R F   + A + ++  ++ + L     +RL         
Sbjct: 405 FSTEARDKKLADEQAERDRLDREFYLQLAAFLLVIALIVGSILMYRRKKRLEQ------- 457

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
                  +        +    +  +  A   + +         + R  + +       + 
Sbjct: 458 -----EAIEEQRRQEELERQRLAEERAAQIEAGEVTEEELTEEEQRQLTEMQA-----IE 507

Query: 533 HMIEINEERFAKILRKWARSE 553
            MI    E  A ++++W   +
Sbjct: 508 EMIMHTPEDAAMLVKQWLAGD 528


>gi|241763655|ref|ZP_04761705.1| flagellar M-ring protein FliF [Acidovorax delafieldii 2AN]
 gi|241367130|gb|EER61496.1| flagellar M-ring protein FliF [Acidovorax delafieldii 2AN]
          Length = 561

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 132/569 (23%), Positives = 235/569 (41%), Gaps = 51/569 (8%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
           + +  ++L R++ + L   + + + + +AA      P Y  L+  L   D   I   LS+
Sbjct: 17  WLQRLSTLDRSQRMRLGVGVALLVAVAIAAIVLGRQPDYRVLFANLSDKDGGAIVAQLSQ 76

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
            N+ ++ +D G +I +PS  V   R+ LA QGLP  S  +G+EL +  N FG+T F + +
Sbjct: 77  MNVPYKYADGGGAILIPSDRVHDVRLRLATQGLPKGSV-AGFELMES-NRFGITQFQERL 134

Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE 189
              R LEGE+ R+IQ++S +  ARVH+ +P+   F +   +P+ASV++      +   A+
Sbjct: 135 NFQRGLEGELTRSIQALSSVQGARVHLALPNQNGFFREQQKPSASVLVSLHPGRILDRAQ 194

Query: 190 --AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKSLSIVQAIQHEIEMN 244
              I HLVA++VP L    V+VLD TGKLL+ +        +  + L  VQ I+ +    
Sbjct: 195 LAGIVHLVASSVPELAPSAVSVLDDTGKLLSQSPDTAAGTGVDAQQLLYVQQIEQQYTRR 254

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVY----DPDSKVERSIRLSKDAQRSETS 300
           I   L   +G +N ++ V AE++    +     +     PD+   RS ++ +        
Sbjct: 255 IMDILEPVVGRNNVKAQVSAEVDFSQTESTSEQHRPNQSPDASAVRSQQVVESNGPQGNP 314

Query: 301 QPESAVTVEQNMPHVS-----DRKVPLPRSLENT--------DKKEEQSNYEINTKSIAT 347
            P        N P  +     +   P P +             K+E   NYE++     T
Sbjct: 315 LPTGVPGAASNQPPAASTAPINGANPAPTAAGGQQQGALGAGSKRESVINYEVDKTVRVT 374

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
              +  ++RL+ AVVVN     +  G++  +      L ++  +V    G N  RGD++ 
Sbjct: 375 RGGSGAVKRLTAAVVVNYQSAED-KGKTVAKALTPEQLEQMTALVRETIGFNKERGDSVN 433

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + +  F  +    +        ++L    +        L   L++  L   AL+      
Sbjct: 434 LMNTPFQVDVTPANDVPLWKQPEMLELAKSFAWPVGAVLFAALVLLGLVRPALKGQERPR 493

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
                     ++ +  P   A+      ++ + +                          
Sbjct: 494 AIAVAGGSIDALEAEQPERPALPAPAKKDELLPVT-----------------------PE 530

Query: 528 DLRLLH---MIEINEERFAKILRKWARSE 553
            LRL     + + N    A IL+ W   E
Sbjct: 531 QLRLEEARMLAKENPMAVANILKTWVNGE 559


>gi|326319071|ref|YP_004236743.1| flagellar M-ring protein FliF [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323375907|gb|ADX48176.1| flagellar M-ring protein FliF [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 568

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 135/570 (23%), Positives = 239/570 (41%), Gaps = 50/570 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            +  ++L R++ L   + I + +   +AA      P Y  L+  L   D   I   LS  
Sbjct: 21  LQRFSALDRSKRLRFGAGIALLVAAVVAAVVLNRQPDYKVLFSNLSDKDGGAIVAQLSTM 80

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           N+ ++ S+ G +I VP+  V   R+ LA QGLP  S  +G+EL +  N FG+T F + + 
Sbjct: 81  NVPYKYSEGGGAILVPAERVHDVRLRLATQGLPKGSV-TGFELME-TNRFGVTQFQERLN 138

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS--VYKSA 188
             R LEGE+ R+IQ++S + +ARVH+ +P+   F +   +P+ASV++             
Sbjct: 139 FQRGLEGELTRSIQALSSVQSARVHLALPNQNGFFREQQKPSASVLLSLYPGRFLDRTQL 198

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243
             I HLVA++VP +    V+VLD TGKLL+     A      I  + LS VQ I+ +   
Sbjct: 199 AGIVHLVASSVPEMSPSAVSVLDDTGKLLSQSPDTAAGSGSAIDAQQLSYVQQIEQQYTR 258

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY----DPDSKVERSIRLSKDAQRSET 299
            I   L   +G +N ++ V AE++    +     +     PDS   RS ++ + +  ++ 
Sbjct: 259 RILDILEPVVGKNNVKAQVTAEVDFSQSEQTSEQHRPNQTPDSSAVRSQQVVESSGGTQG 318

Query: 300 SQPE-SAVTVEQNMPHV-----------SDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
           +QP         N P             +       +      K+E  +NYE++     T
Sbjct: 319 NQPPAGVPGAASNQPPQPSTAPINGANPAPTAGNGQQGQAAGSKRESITNYEVDKTVRVT 378

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSAD-QGKIDSYLAEINKIVSAATGINSRRGDTI 406
              +  ++R+S AVVVN   + E  G++   +      + ++  +V    G N  RGD++
Sbjct: 379 RAGSGAIKRVSAAVVVNYQAIAEAAGKAPQAKAFTPEQIEQMTALVRETIGYNKDRGDSV 438

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
            I +  FL +             +++    +      + L   L++  L   A++ ++  
Sbjct: 439 NIMNTQFLVDNTPAVELPLWKQPEMIELVRSLGWPVGMSLFAALILLGLVRPAIKGMNQP 498

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
                    G+ +        A+         +A  +  +D+                  
Sbjct: 499 PAPAAAVASGRQV-------DAIEADEPERPALAAPTKPEDLIQTPE------------- 538

Query: 527 SDLRLLH---MIEINEERFAKILRKWARSE 553
             +RL     + + N    A IL+ W   E
Sbjct: 539 -QMRLEEARVLAKENPMAVANILKVWVNGE 567


>gi|163853490|ref|YP_001641533.1| flagellar MS-ring protein [Methylobacterium extorquens PA1]
 gi|163665095|gb|ABY32462.1| flagellar M-ring protein FliF [Methylobacterium extorquens PA1]
          Length = 540

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 144/541 (26%), Positives = 254/541 (46%), Gaps = 13/541 (2%)

Query: 15  TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF 74
           T LG  RI  +A+V L  +  F      V+ P    L+  L + D + +   L    I +
Sbjct: 9   TKLGPARIAAMAAVTLTLVGFFAFVILRVSRPDMGVLFSDLSLQDSSSVIRELDARGITY 68

Query: 75  RISDN-GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
                 G ++  P + + K R+  A +GLPS     GYE+FDK ++F  TSF+Q +  +R
Sbjct: 69  ETKGEMGQTVLAPRADLAKLRMDFAGKGLPSQGG-IGYEIFDKGDAFSSTSFVQNVNHLR 127

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRH 193
           A+EGE+AR+I++I  + AARVH+V+P+   F +    P+A+++++ +         AIRH
Sbjct: 128 AMEGELARSIRAIGRVQAARVHLVIPERRLFERDREAPSAAIVVKLMGDLDASQVRAIRH 187

Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEMNINKALAA 251
           L A+AV  L    V+++D  G+LL       E +  G        I+  +   I + +A 
Sbjct: 188 LAASAVEGLKPERVSIVDERGRLLADGARGAEADGAGALEERQAGIERRMRSQIEEIVAG 247

Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311
            +G    R  V AEL+++  + R   +DP+S+V RS +   +   S T   E  VTV   
Sbjct: 248 IVGQGRARVQVTAELDLNRVESRSESFDPESRVVRSTQTRSEN--SLTGGAEGQVTVGNE 305

Query: 312 MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV 371
           +P  +  + P P+  +++ K EE +NYEI+  +   T +  +L+RLS+AV+V+       
Sbjct: 306 LPGANQNQ-PAPQQKDSSQKNEETTNYEISRVTKVETLEGGRLKRLSVAVLVDGVYAPGA 364

Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDI 431
            G+ A Q + D+ +A I  +V  A G +  RGD + + ++ F E       +        
Sbjct: 365 DGKPAYQPRSDAEIARIAALVRTAVGYDKVRGDQVEVVNLRFAETPTAAEFSEPGLIQSF 424

Query: 432 LSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTT 491
           LS     V+  +   V +LL   + +  +R L          +          ++ A   
Sbjct: 425 LSPTKEEVMRLVELTVLSLLTLVVLMAVVRPLLRRVLESDAPMALAGPAGALALAGAAGG 484

Query: 492 GLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWAR 551
                  +  +S+N+ + S      ++IN  +  ++  R++ M+  +     ++LR W  
Sbjct: 485 EAPVEIAVRENSTNKFLES------AKINGQIQAETVERVVDMVRASPTETVEVLRNWIH 538

Query: 552 S 552
            
Sbjct: 539 D 539


>gi|161485650|ref|NP_419721.2| flagellar MS-ring protein [Caulobacter crescentus CB15]
 gi|221233887|ref|YP_002516323.1| flagellar MS-ring protein [Caulobacter crescentus NA1000]
 gi|220963059|gb|ACL94415.1| flagellar M-ring protein FliF [Caulobacter crescentus NA1000]
          Length = 554

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 136/556 (24%), Positives = 251/556 (45%), Gaps = 18/556 (3%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
            F  S    G  R+  +  V    + + +A   F+     + LY  L++ + + ++ AL 
Sbjct: 3   SFLGSIRQFGVGRLAAMLGVGAGVVAVLVALVMFMGKEPSELLYSNLDLKEASEVTQALD 62

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
           +A I +    +GS+I VP   V  AR+ +A +GL SS S  GYE+FD  N+ G T F+Q+
Sbjct: 63  QAGIKYETKGDGSTIMVPRDKVASARLMVAGKGLVSSGS-IGYEIFDTNNALGQTDFVQQ 121

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-RAINPSVYKS 187
           + R RAL+GE+ RTI+++ G+ + RVH+V+P    F +   +P+A+V I           
Sbjct: 122 LNRQRALQGELERTIKAMQGVNSVRVHLVLPKRQLFEEDAEQPSAAVTIGVGSREPSSDM 181

Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINK 247
             AI++LV+++VPN+    V V+D  GK L+A   E      +      ++  I   +  
Sbjct: 182 VRAIQNLVSSSVPNMKAEKVAVIDQHGKTLSAPSDESLAGKMAQDRKSEVEARIAKTVKD 241

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVT 307
            +   LG    R  V AEL+++    +E  +DPD +V RS   ++ + +   +   + VT
Sbjct: 242 MIEGVLGPGKARVNVTAELDLNRVTTQEERFDPDGQVIRSESTTEASSQENKNDDNAGVT 301

Query: 308 VEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367
              N+P          +    T + +  +NYEI+     T  +   ++++++AV ++   
Sbjct: 302 AAANVPGGQGAN-GFQQLGSRTGQNDAVTNYEISKSVTTTVQEPGTIKKIAVAVAIDGVS 360

Query: 368 LTEVLG--RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425
                     A   +    + +I ++V  A G ++ RGD + +T++ F   Q  + G  +
Sbjct: 361 APMAADGKPGAYTPRTAQEIQQIEELVKTAVGFDAERGDQVRVTNIKF--PQPEDQGLEE 418

Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPP 484
              +    ++   ++ A    V  ++   + L A+R  + N+     G++        PP
Sbjct: 419 QGLLAGFDKN--DIMRAAELGVLAVVALLILLFAVRPFIKNLSAPAPGQIALAGPSGGPP 476

Query: 485 ISSAVTTGLMPNDNIALDSSNQDIFSHS--------RNLQSRINSYVSKQSDLRLLHMIE 536
           ++  VT        + +D S + I            R   ++I   V   S  R+   +E
Sbjct: 477 VTRLVTLADGTQQQVVVDQSGEPIALAGPPVSDIDQRIDIAKIEGQVKASSIKRVSEFVE 536

Query: 537 INEERFAKILRKWARS 552
            + +    ILR W   
Sbjct: 537 KHPDESVAILRNWLHE 552


>gi|254517007|ref|ZP_05129065.1| flagellar M-ring protein FliF [gamma proteobacterium NOR5-3]
 gi|219674512|gb|EED30880.1| flagellar M-ring protein FliF [gamma proteobacterium NOR5-3]
          Length = 566

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 131/569 (23%), Positives = 228/569 (40%), Gaps = 30/569 (5%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           + L   F   +    TR L L   +   I + M    +V  P+Y  LY  +   D N + 
Sbjct: 7   NTLFARFNGFSRQPATRQLALLIGLAASIAMAMGMVQWVVEPNYKPLYGTMAPEDTNDVI 66

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
            +L    +D+R+      ++VP+  V +AR+ LA  G P      G+E   +    GL+S
Sbjct: 67  ASLEANGVDYRMDRRSGMVAVPAGDVHRARLLLAGDGYPR-GEGVGFESLYREQEIGLSS 125

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           FM++    RALE E+ARTI ++  +  ARVH+ M    +F +   +P ASVM+       
Sbjct: 126 FMEQARFHRALESELARTIGALESVRGARVHLAMAKQSAFLRQREQPAASVMLNLYAGRT 185

Query: 185 Y--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHE 240
              +    I HLVA++VPNLD   V+V+D  GKLL+    + E           + ++ E
Sbjct: 186 LNERQLSGIVHLVASSVPNLDSEQVSVVDQQGKLLSGQGTDEEFGFTQDQFRYSRQLESE 245

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           +   I   L   LG +  R+ V A+L+    +     Y P+++V RS + S++   S   
Sbjct: 246 LSGRIVDILEPILGANAVRAQVAADLDFTRVERTLETYAPETRV-RSEQTSEET--SNRL 302

Query: 301 QPESAVTVEQNMPHVS----------------DRKVPLPRSLENTDKKEEQSNYEINTKS 344
                     N P +                 D              +    NYE++   
Sbjct: 303 YAGGVPGTLSNEPPIDTTVATVQAAPNVDANIDANAQAGAIPPARTSRRSTINYEMDKTI 362

Query: 345 IATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD 404
                    L++LSIAVV++    T   G ++        + E+  +V  A G ++ RGD
Sbjct: 363 SHVRETPGALQKLSIAVVLDYIETTADDGTTSRVPMPQERIDEVTSLVREAVGFDADRGD 422

Query: 405 TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
           T+++ S  F+E        ++ S ++        +   L+ L   L + F+ +  L +  
Sbjct: 423 TVSVISASFVEVPAIEDSVIESSLLE--QDWIWQLAKGLLVLTVLLALVFVVVRPLVKFA 480

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
            +         G +        +A+  G M +D + L    Q     +            
Sbjct: 481 AVPVPMMQSPQGLAGPGQQQPVAALGGGGMADDQVTLGGQGQMGLPGTAGAGGGGYQQQL 540

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSE 553
           + +      +     +R A+++R W   +
Sbjct: 541 QMA----RSVAAGEPDRAAQVVRGWVSDD 565


>gi|317153718|ref|YP_004121766.1| flagellar M-ring protein FliF [Desulfovibrio aespoeensis Aspo-2]
 gi|316943969|gb|ADU63020.1| flagellar M-ring protein FliF [Desulfovibrio aespoeensis Aspo-2]
          Length = 531

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 136/556 (24%), Positives = 252/556 (45%), Gaps = 44/556 (7%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           ++  F+   T+  R   +++  + +  ++ F    +++N P Y  L   L   D +RI  
Sbjct: 11  KIHGFWSDRTAAQR---ILIGGLAVSVVIAFALMIYWMNKPDYKVLMTNLYPEDASRIVG 67

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L      + + DNG +I VP+  V + R+ +A +G        G+E+FD V   G T F
Sbjct: 68  MLQAEKEQYVLDDNGKTILVPADRVYELRLKVAGEG-NLHGQGIGFEIFDNVQ-IGQTDF 125

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
           +Q I   RAL+GE++RTI     I  ARVH+V+P    F +    P+AS++++  + +  
Sbjct: 126 VQHINFQRALQGELSRTITEFPQIEQARVHLVIPKKSLFIEDQMPPSASIILQLKDNAKL 185

Query: 186 --KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHE 240
                + + +LV+ AV  L+  ++TV D  G+ L   E +     +    L     I++ 
Sbjct: 186 AANEVQGVVNLVSMAVEGLEPKNITVTDMKGRPLYTPEDDSGGLALSNTQLEYKADIENT 245

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
            +  I + L   +G +   + V A+L+   + IR+  YDPD  V RS   S++       
Sbjct: 246 TQRRIMELLGPVVGPEKVIARVNADLDFSQKTIRKESYDPDGSVVRSETRSEETT----- 300

Query: 301 QPESAVTVEQNMPHVSDRKVP--LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
               A ++    P  + R       R+ +++ ++   +N+EIN +         +L+RLS
Sbjct: 301 --AGAASLAGGEPDANFRGDGFTGTRTTQDSTRESRTTNFEINKQEENIIAPVGELKRLS 358

Query: 359 IAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           +AV+V+    TE   G+S    +    L  I  +++ A G +S RGD+I ++++ F E  
Sbjct: 359 VAVIVDGTWQTEEDTGKSVYVPRSAEELERIKNLIAGAVGFDSVRGDSIEVSNISFGEPS 418

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
           L++  ++  + ++   R     +N L+  +  +LV    + AL R   + + +  E+ G 
Sbjct: 419 LYDGDSLMRTMLEYAQRLGKPFLNGLLIFLFLILVVRPVIMALIR-PRVAEQEIEEMAGL 477

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
                 P S  +       D  A+D         SR L++  N  V          + + 
Sbjct: 478 ------PGSQRLALEEEEIDEEAMD--------MSRRLENAKNHAV---------QLSDD 514

Query: 538 NEERFAKILRKWARSE 553
           N ++   +L+ W   E
Sbjct: 515 NMDQAVHLLKSWLAQE 530


>gi|307546949|ref|YP_003899428.1| flagellar MS-ring protein [Halomonas elongata DSM 2581]
 gi|307218973|emb|CBV44243.1| flagellar MS-ring protein [Halomonas elongata DSM 2581]
          Length = 581

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 130/574 (22%), Positives = 222/574 (38%), Gaps = 43/574 (7%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
            F +    L  + ++ L       I +  A   + ++P Y  LY  L  +D   I   L 
Sbjct: 18  SFAQLKRQLRGSPLVALLIAGAASIAVVAALMLWASAPQYRVLYSNLSEADGGSIIAELD 77

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
             +I +R S  G ++ VP   V K R+ LA QGLP    N G EL +   +FG++ F ++
Sbjct: 78  SRSIPYRFSQGGQALMVPGDQVHKLRLQLAEQGLPKGG-NVGLELME-DQAFGISQFAEQ 135

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--K 186
           I   R LEGE+AR+++S+  +  ARVH+ +     F +      ASV++      V    
Sbjct: 136 INYQRGLEGELARSMESLGPVAEARVHLALAKDSVFVRRREPAKASVVLTLEPGRVLGKG 195

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-NILGKSLSIVQAIQHEIEMNI 245
              A+ H+V+++VP+L    VTVLD  G+LL+  +     + G  L  V  ++      I
Sbjct: 196 QVNAVAHMVSSSVPDLAAEAVTVLDQNGRLLSRPDGGSLGLDGTQLDYVAEVERAYRQRI 255

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP--E 303
              L   LG    R+ V A+L+   ++     Y P+     +   S+             
Sbjct: 256 EAILTPILGRGKVRAQVTAQLDFSRREETAERYTPNQPPNEAAVRSRQTSLDLNGDDLAN 315

Query: 304 SAVTVEQNMPHV-----------------------SDRKVPLPRSLENTDKKEEQSNYEI 340
                  N P                         ++         +    +++  NYE+
Sbjct: 316 GVPGALSNTPPGFAESPIATAPEDGEDAAADADQETNDTASQASQAQRRLSRDDVINYEV 375

Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLT--EVLGRSADQGKIDSYLAEINKIVSAATGI 398
           + +     H   ++ERLS AVVV+  +    +  G        D  LA++ ++V  A G 
Sbjct: 376 DRQVSHVEHQRGRIERLSAAVVVDYRQTPAEQPDGEPTAAPLDDDELAQVKRLVQQALGF 435

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           +  RGD +T+ +  F +     +        ++    F      LV L   LL   L   
Sbjct: 436 SEARGDQVTVVNRPFADESSSQAELAWWQRPELQRLAFGLGRYLLVGLALLLLYLLLLRP 495

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
            +RR          E    + +SP P           +++     S +D  +     + R
Sbjct: 496 LIRRYT--------ERPLPAAVSPTPSIDTRIGDEPSDEDAT---SGEDEPASHATPRRR 544

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
             +   +Q+   L  M + +    A I+R W   
Sbjct: 545 RKASAYEQNLNDLREMAQEDPRMVAMIVRGWMNK 578


>gi|171057703|ref|YP_001790052.1| flagellar M-ring protein FliF [Leptothrix cholodnii SP-6]
 gi|170775148|gb|ACB33287.1| flagellar M-ring protein FliF [Leptothrix cholodnii SP-6]
          Length = 576

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 132/569 (23%), Positives = 228/569 (40%), Gaps = 46/569 (8%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
           F      L   R L LA  +L  I L   A F+    +   L+  L   D   I   L++
Sbjct: 23  FAARLAGLPLGRKLALAGGVLALIGLLAMAVFWNTGNNDKVLFANLSDKDGGAIVAQLTQ 82

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
            N+ ++ ++ G++I VP+  V   R+ LA  GLP   S  G+EL D    FG T F + +
Sbjct: 83  MNVPYKFTEGGTAILVPAEKVHDVRLKLAQAGLPK-GSTVGFELMDNA-RFGTTQFQERL 140

Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE 189
              R LEGE+ R+I ++S + AARVH+ +P+   F +   +P+ASV++          A+
Sbjct: 141 NFQRGLEGELVRSITALSAVEAARVHLALPNQNGFFRDQQKPSASVLLTLHPGRTLDRAQ 200

Query: 190 --AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--------RNILGKSLSIVQAIQH 239
              I HLV+A+V  L+   V+VLD +G LL                +  + L  V  I+ 
Sbjct: 201 LAGIVHLVSASVAELNPKAVSVLDQSGSLLAGPPEGMAGAAGGTNGLDAQQLQYVNQIET 260

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK----VERSIRLSKDAQ 295
                I   L   LG DN R+ V AE++    +     + P+        RS + ++ + 
Sbjct: 261 VYTKRILDILEPVLGRDNLRAQVSAEIDFSQTESTSEEFKPNQGDAPAAVRSAQSTEQSN 320

Query: 296 RS----------ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSI 345
                       +++QP +  T   N      +          T ++E  +NYE++    
Sbjct: 321 PGAAMPAGVPGAQSNQPPTPATAPINGQAQQMQAAQGGVGSNGTARREAVTNYEVDKTVR 380

Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
            T   + +++RLS AVVVN   +T+  G           L ++  +V    G +  RGD+
Sbjct: 381 VTRAASGQVKRLSAAVVVNSRSVTDKKGNVQVVPLTPEELDKLTALVQETVGFSKDRGDS 440

Query: 406 ITITSMDFLENQLFNSGTV---QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           + + +  F  ++     T    Q    D++      +  AL+          +   A+R 
Sbjct: 441 VKVINAPFKVDKPVEDTTPLWKQPEVQDMVRTLALPLGLALL-------ALIIVFGAIRP 493

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
                   +      +++       A+        ++A    N  + +   + Q R+   
Sbjct: 494 ALKAAQPPEPVQLVDAVVDDAQELPALEGSAEEAAHLAAGHMNA-LPAPEDDAQRRLE-- 550

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWAR 551
                  +   M + N    A I+R W  
Sbjct: 551 -------QARKMAKDNPAAVANIVRGWVS 572


>gi|308273184|emb|CBX29787.1| hypothetical protein N47_F14820 [uncultured Desulfobacterium sp.]
          Length = 520

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 139/561 (24%), Positives = 240/561 (42%), Gaps = 52/561 (9%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           + D  +QF     SL   + + ++  +L+ I  F       N   Y  L+  L   D   
Sbjct: 1   MNDSAVQFLNFIKSLPLAKKITISVTVLLLIAAFAVMFMLSNQVDYRVLFNNLSAQDAGA 60

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L E NI ++I   GS I VPS  V + R+ +   GLP      G+E+FDK + +  
Sbjct: 61  IIEKLKEKNIPYKIEGGGSLILVPSDQVYELRLKMVGDGLPRDG-QIGFEIFDKTD-YKT 118

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T F+Q +   RAL+GE+ARTI     + ++R+ IV+P    F +     +ASV++   + 
Sbjct: 119 TQFVQSLNYQRALQGELARTINCFDEVKSSRIFIVLPKETLFAEDTKPASASVLLDLKSN 178

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN----ILGKSLSIVQAIQ 238
              +   AI HLVA+AV  L+  +VTV+D+ G+++            +    L     I+
Sbjct: 179 LPPERLSAIVHLVASAVEGLEPEEVTVVDTKGRVIFKGGNGNQTNTFLNNSQLDYKSKIE 238

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
            EI  N+   L   +G  N    V A+++ +   + E  YDP + V RS R  +++ R+ 
Sbjct: 239 SEISRNVQSMLEGIIGSGNAIVRVTADIDFNKTSMNEEEYDPAAAVVRSKRDIEESFRAG 298

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ-SNYEINTKSIATTHDNYKLERL 357
            +  ESA ++      V    +P     +N  +K++  +NYEIN  +   +     ++RL
Sbjct: 299 NASSESAPSLINQRAGV----IPAESVDQNGKRKKDTLTNYEINKVTRVISKPAGTIKRL 354

Query: 358 SIAVVVNKGRLTEVLGRSADQ----GKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           S+A V++    T       D+     + D  L +   IV  A G N  R D I+++S+ F
Sbjct: 355 SVAAVIDGRYETVKSADGTDKRNYIPRTDEELKKFEDIVKGAMGYNEDREDKISVSSIPF 414

Query: 414 LE--NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471
            E         +    FM +L  +  ++IN        L+  F  L  ++ L N      
Sbjct: 415 SESLPGDIQMASEPFDFMALLKDYKNSLIN-----FCLLIAVFFVL--VKPLIN------ 461

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
                             T   MP +       N      +    +++    +K    ++
Sbjct: 462 ------------------TLKNMPKEQFV----NVKEIPAAVQSNAQLPGVKTKGQIEKV 499

Query: 532 LHMIEINEERFAKILRKWARS 552
           + + + N E+  +++R W   
Sbjct: 500 IEISKSNPEKTEQLIRGWMNE 520


>gi|323698502|ref|ZP_08110414.1| flagellar M-ring protein FliF [Desulfovibrio sp. ND132]
 gi|323458434|gb|EGB14299.1| flagellar M-ring protein FliF [Desulfovibrio desulfuricans ND132]
          Length = 530

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 119/553 (21%), Positives = 242/553 (43%), Gaps = 39/553 (7%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           ++   +   T   R   +++  +    ++ F    +++N P Y  L   L   D +R+  
Sbjct: 11  KMQGIWADRTVSQR---ILIGGLTAAVVISFALMIYWMNKPDYRVLMTNLYPEDASRVVG 67

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L     D+++ +NG++I VP+  V + R+ +A +G        G+E+FD+V   G T F
Sbjct: 68  MLQAQKEDYKLENNGTTIMVPADRVYELRLKVAGEG-NLHGQGIGFEIFDEVQ-IGQTDF 125

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
           +Q +   RAL+GE+ARTI     +  ARVH+V+P    F +    P+AS++++       
Sbjct: 126 VQHVNYQRALQGELARTITEFPIVDKARVHLVIPQKSLFIEDQVAPSASIVLQLKGEGKL 185

Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHE 240
           +    + I +LV+ AV  L+  ++TV D  G  L   E +     +    L     ++ +
Sbjct: 186 EPDEIKGIVNLVSMAVEGLEPKNITVTDMKGHPLYTPEDQSTGLAMSNAQLLHKADVEGK 245

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           ++  I + L   +G D   + V A+L+   + +R+ VYDP+S V RS   +++       
Sbjct: 246 LQRRILELLGPAVGPDKVIARVNADLDFSQRTVRKEVYDPNSAVVRSETRNEETTSGAAD 305

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
               A  V     +         ++ +++ ++   +N+EI+ +         +L+RL++A
Sbjct: 306 LGGGAPDV-----NFRGDGFSGTKTTQDSTRESRTTNFEIDKQEENIITPVGELKRLTVA 360

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           V+V+    T+  G+     +    +  I  ++  A G +++RGDTI ++++ F E QL +
Sbjct: 361 VIVDGTWQTDADGKQVYVPRSAEEINRIRTLIENAVGFDAQRGDTIEVSNISFGEPQLAD 420

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
             ++  + ++   R     +N L+  +  +LV    + AL R   + + +  E+ G    
Sbjct: 421 GDSLMRTMLEYAQRLGKPFLNGLLIFLFLILVVRPVVMALIR-PRVAEQEIEEMAG---- 475

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
                        +P          +         +   N+            + + N +
Sbjct: 476 -------------LPGSERLALEEEEMDEEALDASRRLENAKNHAI------QLSDENID 516

Query: 541 RFAKILRKWARSE 553
           +   +L+ W   E
Sbjct: 517 QAVHLLKTWLTQE 529


>gi|268316357|ref|YP_003290076.1| flagellar M-ring protein FliF [Rhodothermus marinus DSM 4252]
 gi|262333891|gb|ACY47688.1| flagellar M-ring protein FliF [Rhodothermus marinus DSM 4252]
          Length = 533

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 133/568 (23%), Positives = 233/568 (41%), Gaps = 49/568 (8%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           + +QL QF    +   R   L L +V +  I+L +   ++   P Y  L+  L  SD +R
Sbjct: 1   MFEQLKQFLSRLSPGQR---LALGAVTIGSILLLLGIAYWAGRPEYALLFGGLSPSDASR 57

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L E N+ +++ + G++I VP   V + R+  A +GL  S    GYELFD+ N+ G+
Sbjct: 58  IVETLQEENVPYQLKEGGTAIWVPRDRVYELRLRFAGEGLV-SDGPVGYELFDQ-NTLGM 115

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T FMQ +   RALEGE+ARTI S+  +  A+VH+V+P+   FR+    P+ASV++   + 
Sbjct: 116 TDFMQRLNYKRALEGELARTIMSLQQVELAKVHLVLPERSPFRETQVAPSASVLLSLKSG 175

Query: 183 --SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER---NILGKSLSIVQAI 237
                +  + I  LVA AV  LD  +VTVLD+ G LL+  +       +    L + QA+
Sbjct: 176 ARLTEEQIDGITALVAGAVEGLDPANVTVLDARGNLLSNPDAGNAELALSSTQLKLRQAL 235

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           +  +       L   LG  N    V A LN D       + DP+S    S    ++    
Sbjct: 236 EAHLTEKGQSMLDRVLGPGNAIVRVSATLNFDQAVTERQLIDPESATVISEERLEE---- 291

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
                                        E +       NYE++        +   +E L
Sbjct: 292 ------------------------AGTGGEGSSASSMVRNYELSRTVERIQQNGGDVEYL 327

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           +++V++N+       G    +   +  L EI ++V  A G    RGD   I    F  + 
Sbjct: 328 TVSVILNQRFEEGPDGTPQPRPYTEDELREIEELVKNAVGFRPERGDRFAIHQTRF--DT 385

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
             +    Q              +   + ++   L  +L    +RR+  +    +  +G  
Sbjct: 386 QIDDQIAQELREQRRQEQLNLYLRYGLMVLALGLAVWLLRALVRRMGELAGETQVLIGRV 445

Query: 478 SILSPPPISSAVTTGLMPNDNIA---LDSSNQDIFSHSRNLQSRINSYVSKQSDLR---- 530
                   +    +G +    +       S++++        SR+++    +   +    
Sbjct: 446 DQEHGALGAPEGASGALQGKAVPGLESGESDEELVLIDDIYTSRLSAEAKARLKAKHILF 505

Query: 531 --LLHMIEINEERFAKILRKWARSEIED 556
             +   +    E  A+I+R W  ++++D
Sbjct: 506 EEVQKQVNEKPEEAAEIIRSWLVADMQD 533


>gi|226944512|ref|YP_002799585.1| flagellar M-ring protein [Azotobacter vinelandii DJ]
 gi|226719439|gb|ACO78610.1| flagellar M-ring protein [Azotobacter vinelandii DJ]
          Length = 576

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 131/540 (24%), Positives = 229/540 (42%), Gaps = 47/540 (8%)

Query: 44  NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP 103
             P Y  L+  L+ +D  RI   L    I +R+S+ G S+ VP+  +   R+ LA QGLP
Sbjct: 54  REPEYRVLFANLDEADGGRIIGELDRRAIPYRLSEGGHSLLVPADQLHTLRLQLAEQGLP 113

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
               N G+EL DK  +FG++ F ++I   R LEGE+AR+I+S+  +  ARVH+ M     
Sbjct: 114 QGG-NVGFELLDK-QAFGVSQFAEQINFQRGLEGELARSIESLGPVSRARVHLAMAKQSV 171

Query: 164 FRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE 221
           F +      ASV++              AI HLV+++VP L +  VTV+D  G+LL+   
Sbjct: 172 FVREREPARASVVLNLQPGRELGESQVNAIAHLVSSSVPGLSIDAVTVVDQNGRLLSRQG 231

Query: 222 MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD 281
             R++ G  L  +  ++   +  I   LA  LG  N R+ VVA+++  +++     Y P+
Sbjct: 232 GARDLDGTQLDYIDEVERSYQRRIENILAPILGAQNVRAQVVAQIDFASREQTAERYAPN 291

Query: 282 SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD----------- 330
            +   +   S+    + +   E A  V   + +      P P    N             
Sbjct: 292 QQPGEAAVRSQQLSENLSGGTELARGVPGALTNSPPNPPPPPAPAANETTQTGNAAGTGG 351

Query: 331 ----------------KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR 374
                            ++  +NYE++       +    ++RLS AVVVN     +  G+
Sbjct: 352 TGQAAAAAAEKAPTTLSRDNTTNYEVDHSVEHVQYRRGSVQRLSAAVVVNYRDAIK-DGQ 410

Query: 375 SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSR 434
           ++ +      LA I+++V  A G    RGD + I +  F ++ + +    +         
Sbjct: 411 TSREPLSQEELARIDRLVRQAMGFTDSRGDQLEIMNSPFADSLVVD--QQEWWKTPEFYN 468

Query: 435 HFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLM 494
              ++   L+     LL+  + L  L+R H    A +     ++  +      A     +
Sbjct: 469 LATSLSRYLLVAFIALLLWLMVLRPLKRRHREKLAAEASARAEAAEAAQLALEASRVPAL 528

Query: 495 PNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
             +            S  R+L+ +  S + +Q+   L  M + +    A I+R W + E 
Sbjct: 529 AAEE-----------SQRRDLRRK--SPIYEQNLQSLREMAKEDPRLVAMIVRGWMKKEE 575


>gi|320529385|ref|ZP_08030473.1| flagellar M-ring protein FliF [Selenomonas artemidis F0399]
 gi|320138351|gb|EFW30245.1| flagellar M-ring protein FliF [Selenomonas artemidis F0399]
          Length = 526

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 129/560 (23%), Positives = 242/560 (43%), Gaps = 53/560 (9%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++ L  ++      R R ++L S + +  ++F  + ++ + P    L+  +E  D   ++
Sbjct: 6   ERGLAMWERFDK--RQRYIMLGSALAILALIFGLSFWYGSKPDMVPLFTDMETKDAGEVA 63

Query: 65  VALSEANIDFRISD--NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
             L EA I + + D  NG++I VP++ V +AR++LA QGLP  +   G+E+FD  +  G+
Sbjct: 64  NQLREAKISYEVQDGKNGTTILVPTTNVHEARLNLATQGLPRGNK--GFEIFD-DSKLGV 120

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T F   +  ++AL+GE+ RTI+ I  +  ARVHIV+P+   ++K     TAS+M+R    
Sbjct: 121 TEFQNRVNYLQALQGELTRTIEQIDAVEKARVHIVLPEDSLYKKEEKPATASIMLRLKPG 180

Query: 183 --SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI-----LGKSLSIVQ 235
                K  + I +L A +V  L   ++T++D TGK+L   + +            L + +
Sbjct: 181 TELTKKEIKGIVNLAAHSVKGLTPENITIVDDTGKILNDPDDQDEKSVGVKTLTQLDMTR 240

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSK 292
            +Q  IE  +   L   LG     + V  EL+ D +   +  + P   D+ + RS +   
Sbjct: 241 KVQDNIEKKVQSLLDQTLGEGRAVARVSVELDFDDRLTDKQTFTPVVDDAGIIRSQQDIS 300

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
           +     ++ P     V+ N+P   +++     +    +KKE   NYEIN +         
Sbjct: 301 ENYTGSSTNPGGPAGVQSNVPGYVEQE---SNANAQYEKKESTKNYEINEERQHVIASPG 357

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
            + RL++AV+VN                       I + VS+A GIN  RGDTI++  + 
Sbjct: 358 SIRRLTVAVLVNDDV-------------TQPQQESILRTVSSAAGINQARGDTISVEPLP 404

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F +         + +  D   R F   +  ++ ++  ++   L     +RL         
Sbjct: 405 FSKEAAERRAAEEQAEKDRQDRIFYAQVGIVLLIIALIVGGILMYRRKKRLER------- 457

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
           E   ++        +      +    +  +  +++        Q+             LL
Sbjct: 458 EAAEEAQRIEEERIAEERAAAIAAGQVEEEDLSEEEQQQMNQKQA-------------LL 504

Query: 533 HMIEINEERFAKILRKWARS 552
            +I+   E  A +++ W   
Sbjct: 505 ALIDAKPEEVALLVKTWLSE 524


>gi|255021373|ref|ZP_05293421.1| Flagellar M-ring protein fliF [Acidithiobacillus caldus ATCC 51756]
 gi|254969236|gb|EET26750.1| Flagellar M-ring protein fliF [Acidithiobacillus caldus ATCC 51756]
          Length = 568

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 129/565 (22%), Positives = 229/565 (40%), Gaps = 36/565 (6%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
           Q+ +    L   R   + +V+       +    +     Y  LY  L   D   +   L 
Sbjct: 19  QWQRRWQELPGNRRFAILAVLAAIFAGIVVTLLWSRPQGYGVLYTNLSNRDGGEVIAQLQ 78

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
           + N+ FRI+D G+ ISVP++ V   R+ LAA GLP      G+E+ D     G + F++ 
Sbjct: 79  KLNVPFRITDGGAVISVPANEVYATRMKLAAVGLPR-GEGVGFEILDHE-PMGTSDFVEH 136

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-- 186
           +   RALEG + RTI S+S +  A+VH+ +P    F     +PTASV++           
Sbjct: 137 VNYQRALEGSLERTIASLSAVERAKVHLAIPKPSVFLSQEEKPTASVLVSLYPGRELSAA 196

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQAIQHEIEMNI 245
               I HLVAA+VP L   +VTV+D  G LL+A    +  +    L+  +A+    E  I
Sbjct: 197 QVAGIVHLVAASVPGLTDKNVTVVDQQGNLLSAQGGNDLGLQPGQLAYQRAVDRAYEHRI 256

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE------- 298
            + LA  +G    R AV A+++    +   + Y     + +   +               
Sbjct: 257 EQILAPIVGAGGVRVAVSADIDFSHSESSSVTYGNHQILSQQQNVRSSTGGGGPYGVPGA 316

Query: 299 -TSQPESAVTVEQNMPHVSDRKVP--------LPRSLENTDKKEEQSNYEINTKSIATTH 349
            ++QP          P VS             L          +  +N++++   + T +
Sbjct: 317 LSNQPPGVAIAPLTAPTVSTLSPGDLIALAPTLKALAPTESSSDSTTNFDVDQTIVHTVN 376

Query: 350 DNYKLERLSIAVVVNKG-RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
               ++RLS+AV+VN     T + G    +    + L +I ++V  A G +++RGDT+ +
Sbjct: 377 PVGSVKRLSVAVLVNDRLEGTGLGGAKQAKPLTAAQLQQIQQLVEDAIGYDAKRGDTVKV 436

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
            +M F   +  +S      +               + L+   ++ + GL  +R L  I  
Sbjct: 437 VNMPFSGTEAVSSHLP--WWQQEWFLALLHGTLRYLVLLLLAILLYFGL--IRPLLRIRG 492

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
            ++  +   S+        A   G      +A D       +    +    N   +    
Sbjct: 493 RREPTLAADSV--------ARDGGQGEAGEVAADRGQPGPTTAREPVSMPANPLETDLYV 544

Query: 529 LRLLHMIEINEERFAKILRKWARSE 553
            R   ++  +  R A+++++W  SE
Sbjct: 545 AR--QLVMQDPGRAAQVVKEWLSSE 567


>gi|238927418|ref|ZP_04659178.1| flagellar M-ring protein FliF [Selenomonas flueggei ATCC 43531]
 gi|238884700|gb|EEQ48338.1| flagellar M-ring protein FliF [Selenomonas flueggei ATCC 43531]
          Length = 526

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 133/562 (23%), Positives = 240/562 (42%), Gaps = 53/562 (9%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++ L  +K      R R ++L S +++  ++F  + ++ + P    L+  +E  D   ++
Sbjct: 6   ERGLALWKRFDK--RQRYIMLGSALVILALIFGLSFWYGSKPDMVPLFTDMETKDAGEVA 63

Query: 65  VALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
             L E+ I + I +N  G++I VP++ V +AR++LA QGLP  +   G+E+FD  +  G+
Sbjct: 64  NQLRESKISYEIQENKSGTTILVPTANVHEARLNLAVQGLPRGNK--GFEIFD-DSKLGV 120

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN- 181
           T F   +  ++AL+GE+ RTI+ I  +  ARVHIV+P+   ++K     TAS+M+R    
Sbjct: 121 TEFQNRVNYLQALQGELTRTIEQIEAVDKARVHIVLPEDSLYKKEEKPATASIMLRLKPN 180

Query: 182 -PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI-----LGKSLSIVQ 235
                K  + I +L A +V  L   ++T++D TGK+L   + +            L + +
Sbjct: 181 TELTKKEIKGIVNLAAHSVKGLTPENITIVDDTGKILNDPDDQDEKGLGVKTITQLDMTR 240

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSK 292
            +Q  IE  I   L   LG     + V  EL+ D +      + P   DS + RS +   
Sbjct: 241 KMQDSIEKKIQTLLDQTLGEGRAFARVSLELDFDDRLTDRQTFTPVVDDSGIVRSQQDIS 300

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
           ++    ++ P     V+ N+P   +++     +    +KKE   NYEIN +         
Sbjct: 301 ESYTGSSTNPGGPAGVQSNVPGYVEQESNANAA---YEKKESTKNYEINEERQHVIASPG 357

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
            + R+++AV+VN                       I + VS+A GIN  RGDTI++  + 
Sbjct: 358 SIRRMTVAVLVNDDV-------------TQPQQESILRTVSSAAGINQARGDTISVEPLP 404

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F             +  D   R F   + A++ ++  ++   L     +RL         
Sbjct: 405 FSTEAAERRAAELQAEKDRQDRIFYMQVGAVLLIIALIVAAVLMYRRKKRLER------- 457

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
                         +A     +  + +A + +                        L LL
Sbjct: 458 -------------EAAEEAQRLEEERLAEERAAAIAAGEVEEEDLSEEEQQQMNQKLALL 504

Query: 533 HMIEINEERFAKILRKWARSEI 554
            +I+   E  A +++ W   E 
Sbjct: 505 ALIDSKPEEVALLVKTWLTEEE 526


>gi|125525107|gb|EAY73221.1| hypothetical protein OsI_01094 [Oryza sativa Indica Group]
          Length = 575

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 124/491 (25%), Positives = 218/491 (44%), Gaps = 26/491 (5%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            +  ++L R++ L   + I + +   +AA      P Y  L+  L   D   I   LS  
Sbjct: 21  LQRFSALDRSKRLRFGAGIALLVATVVAAVVLNRQPDYKVLFSNLSDKDGGAIVAQLSTM 80

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           N+ ++ S+ G +I VP+  V   R+ LA QGLP  S  +G+EL +  N FG+T F + + 
Sbjct: 81  NVPYKYSEGGGAILVPAERVHDVRLRLATQGLPKGSV-TGFELME-TNRFGVTQFQERLN 138

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS--VYKSA 188
             R LEGE+ R+IQ++S + +ARVH+ +P+   F +   +P+ASV++             
Sbjct: 139 FQRGLEGELTRSIQALSSVQSARVHLALPNQNGFFREQQKPSASVLLSLYPGRFLDRTQL 198

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEM 243
             I HLVA++VP +    V+VLD TGKLL+     A      I  + LS VQ I+ +   
Sbjct: 199 AGIVHLVASSVPEMSPSAVSVLDDTGKLLSQSPDTAAGSSGAIDAQQLSYVQQIEQQYTR 258

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY----DPDSKVERSIRLSKDAQRSET 299
            I   L   +G +N ++ V AE++    +     +     PDS   RS ++ + +  ++ 
Sbjct: 259 RILDILEPVVGKNNVKAQVTAEVDFSQSEQTSEQHRPNQTPDSSAVRSQQVVESSGGTQG 318

Query: 300 SQPE-SAVTVEQNMPHV-----------SDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
           +QP         N P             +       +      K+E  +NYE++     T
Sbjct: 319 NQPPAGVPGAASNQPPQPSTAPINGANPAPTAGNGQQGQAAGSKRESITNYEVDKTVRVT 378

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSAD-QGKIDSYLAEINKIVSAATGINSRRGDTI 406
              +  ++R+S AVVVN   + E  G++   +      + ++  +V    G N  RGD++
Sbjct: 379 RAGSGAIKRVSAAVVVNYQAIAEAAGKAPQAKAFTPEQIEQMTALVRETIGYNKDRGDSV 438

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
            I +  FL +             +++    +      + L   L++  L   A++ ++  
Sbjct: 439 NIMNTQFLVDNTPAVELPLWKQPEMIELAKSLGWPVGMSLFAALILLGLVRPAIKGMNQP 498

Query: 467 DDAKKGEVGGK 477
                    G+
Sbjct: 499 PAPAAAVAAGR 509


>gi|332284042|ref|YP_004415953.1| flagellar MS-ring protein [Pusillimonas sp. T7-7]
 gi|330427995|gb|AEC19329.1| flagellar MS-ring protein [Pusillimonas sp. T7-7]
          Length = 563

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 129/559 (23%), Positives = 224/559 (40%), Gaps = 78/559 (13%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  LE  D   I  AL++ NI +++S  G++I VP + V + R+ LA Q
Sbjct: 41  MWARTPDYGVLFSNLEDRDGGAIVAALTQQNIPYQLSSTGNAILVPRNKVHEVRLQLAQQ 100

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP     +G+EL D+   FG + F ++I   RALEGE+  +IQS+  + +ARVH+ +P 
Sbjct: 101 GLPRGG-ETGFELLDQT-RFGASQFTEQINYQRALEGELVSSIQSMHAVQSARVHLAIPR 158

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    PTASV++              AI  LV+++VP+L    V+V+D  G+LLT
Sbjct: 159 ESLFVRDRQPPTASVLLTLYPGRSLSDAQVAAITWLVSSSVPHLSADKVSVVDQNGRLLT 218

Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
               E    G   +++  I+      I   +   +G  N R+ V A+++   ++    VY
Sbjct: 219 NLNGEAGADGTRRNLINDIEQRTVQRILTLITPLVGPGNVRAQVSADVDFAQREQTSEVY 278

Query: 279 DPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVSD------------------ 317
            P+ K   +   S+    S       PE       N P ++                   
Sbjct: 279 RPNQKPGEAAVRSEQTSSSVQHNVLPPEGIPGALTNQPPLNAVAPIVTPPAPGAANPNDP 338

Query: 318 -------------------RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
                                    +      + +   NYE++            L RLS
Sbjct: 339 NAAPDAAPDAAQNPNGNVLAGGENLQQGTGNSRSDATINYEVDRSITHVKDPVGSLRRLS 398

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
            AVVVN     +V G++      +  LA++N +V  A G +  RGDT+++ +  F ++  
Sbjct: 399 AAVVVNYR---DVDGKAT--PLPEEELAKLNDLVKQAMGYSPARGDTLSVVNSQFSDD-- 451

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
                  +    I   +   ++  ++  V  LLV  L +  L   +    A++  +  + 
Sbjct: 452 -TPAAAPIWQNPIYLEYAMQLLQYVLAGVALLLVWRLIIKPLLADNEASKAQRQALADEE 510

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
                                     N++  + +    S +  Y    +  R   M E +
Sbjct: 511 ------------------------DKNREAIAAAERRASEMTRYEENMATAR--AMAEKD 544

Query: 539 EERFAKILRKWARSEIEDR 557
               A +LR W  ++  +R
Sbjct: 545 PRAVAMVLRSWMENKDGNR 563


>gi|163856458|ref|YP_001630756.1| flagellar MS-ring protein [Bordetella petrii DSM 12804]
 gi|163260186|emb|CAP42488.1| flagellar M-ring protein FliF [Bordetella petrii]
          Length = 559

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 119/552 (21%), Positives = 217/552 (39%), Gaps = 76/552 (13%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  L+  L+  D   I  AL + N+ +R S +G ++ VP+  V   R+ LA Q
Sbjct: 45  MWGREPDYKVLFANLDDRDGGAIVSALGQMNVPYRFSGDGRALLVPADRVYATRMQLAGQ 104

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   S  G+EL D    FG + F ++I   R LEGE+AR+I++++ + +ARVH+ +P 
Sbjct: 105 GLPRGGS-VGFELLDNA-RFGASQFAEQINYQRGLEGELARSIEAMNTVQSARVHLALPR 162

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    PTASV++              A+  LVA++VP+L   +++++D  G+LL+
Sbjct: 163 QSLFVRDRQAPTASVLLHLYPGRSLGDAQVAAVAWLVASSVPDLTAENISIVDQNGRLLS 222

Query: 219 ANEME-RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
           A   E R +      + + I+      I   L   +G  N ++   AE++   ++    V
Sbjct: 223 APLGEGRGLDADQSRLRRDIEQRTVERILTILNPLVGPGNVQAQASAEMDFARREQTSEV 282

Query: 278 YDPDSKVERSIRLSKDAQRS--------------ETSQPESAVTVEQNMPHVSDRKVPLP 323
           Y P+ +  ++   SK    S               ++QP +A       P  + +     
Sbjct: 283 YRPNQEPGQAAVRSKQTSDSLQTGIDPAQGVPGALSNQPPAAAQAPIVNPPAAPQAAQGG 342

Query: 324 RSL---------------------ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
           +                          ++ +   NYE++            L+RLS+AVV
Sbjct: 343 QPGQLAQAGQNAAQGAATQAAPRLPTNNRNDATINYEVDRTISHVKQPVGMLKRLSVAVV 402

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           VN             Q   +  L ++  +V  A G +  RGD++ + +  F +  +    
Sbjct: 403 VNYL----PDSSGEPQPLPEEELTKLTNLVREAMGYSEARGDSLNLVNSQFNDKPVKPPF 458

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482
                 +D++          L ++ G  L  +L    LR                + L+P
Sbjct: 459 WRDPELLDLVK-------TVLAWVFGLALALWL-YRRLRP------------AVSNYLNP 498

Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542
           P             D    ++  Q++   ++           + +  R   M   +    
Sbjct: 499 PV------------DPEEAEARRQEMQREAQAAARAKEVNRYEDNLQRARDMATKDPRAV 546

Query: 543 AKILRKWARSEI 554
           A ++R W   + 
Sbjct: 547 AMVMRAWMTQDE 558


>gi|313895975|ref|ZP_07829529.1| flagellar M-ring protein FliF [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975400|gb|EFR40861.1| flagellar M-ring protein FliF [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 526

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 129/560 (23%), Positives = 242/560 (43%), Gaps = 53/560 (9%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++ L  ++      R R ++L S + +  ++F  + ++ + P    L+  +E  D   ++
Sbjct: 6   ERGLAMWERFDK--RQRYIMLGSALAILALIFGLSFWYGSKPDMVPLFTDMETKDAGEVA 63

Query: 65  VALSEANIDFRISD--NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
             L EA I + + D  NG++I VP++ V +AR++LA QGLP  +   G+E+FD  +  G+
Sbjct: 64  NQLREAKISYEVQDGKNGTTILVPTTNVHEARLNLATQGLPRGNK--GFEIFD-DSKLGV 120

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T F   +  ++AL+GE+ RTI+ I  +  ARVHIV+P+   ++K     TAS+M+R    
Sbjct: 121 TEFQNRVNYLQALQGELTRTIEQIDAVEKARVHIVLPEDSLYKKEEKPATASIMLRLKPS 180

Query: 183 --SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI-----LGKSLSIVQ 235
                K  + I +L A +V  L   ++T++D TGK+L   + +            L + +
Sbjct: 181 TELTKKEIKGIVNLAAHSVKGLTPENITIVDDTGKILNDPDDQDEKSVGVKTLTQLDMTR 240

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSK 292
            +Q  IE  +   L   LG     + V  EL+ D +   +  + P   D+ + RS +   
Sbjct: 241 KVQDNIEKKVQSLLDQTLGEGRAVARVSVELDFDDRLTDKQTFTPVVDDAGIIRSQQDIS 300

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
           +     ++ P     V+ N+P   +++     +    +KKE   NYEIN +         
Sbjct: 301 ENYTGSSTNPGGPAGVQSNVPGYVEQE---SNANAQYEKKESTKNYEINEERQHVIASPG 357

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
            + RL++AV+VN                       I + VS+A GIN  RGDTI++  + 
Sbjct: 358 SIRRLTVAVLVNDDV-------------TQPQQESILRTVSSAAGINQARGDTISVEPLP 404

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F +         + +  D   R F   +  ++ ++  ++   L     +RL         
Sbjct: 405 FSKEAAERRAAEEQAEKDRQDRIFYAQVGIVLLIIALIVGGILMYRRKKRLER------- 457

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
           E   ++        +      +    +  +  +++        Q+             LL
Sbjct: 458 EAAEEAQRIEEERIAEERAAAIAAGQVEEEDLSEEEQQQMNQKQA-------------LL 504

Query: 533 HMIEINEERFAKILRKWARS 552
            +I+   E  A +++ W   
Sbjct: 505 ALIDAKPEEVALLVKTWLSE 524


>gi|239909140|ref|YP_002955882.1| flagellar M-ring protein [Desulfovibrio magneticus RS-1]
 gi|239799007|dbj|BAH77996.1| flagellar M-ring protein [Desulfovibrio magneticus RS-1]
          Length = 547

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 132/563 (23%), Positives = 246/563 (43%), Gaps = 38/563 (6%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
            ++L+Q++ + ++  R   ++LA +    +  F+   F +N P    LY  +   D +R+
Sbjct: 9   FEKLIQYWSNRSAAQR---IMLAGLAASLVAAFVVMLFILNQPDMRVLYTNMPQEDASRV 65

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L  +   + + DNG+++ VP+  V + R+ +A +G+       G+ELFD++   G T
Sbjct: 66  VELLKASKTPYELRDNGATVLVPAEAVYEQRLKVAGEGVMR-GQGIGFELFDEL-KVGQT 123

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
            F+Q I   RAL+GE+ARTI     +  ARVH+V+P    F +   + TASV++      
Sbjct: 124 DFVQRINYTRALQGELARTISEFPQVEKARVHLVLPHKSLFIEEQKKATASVVLTLRKGQ 183

Query: 184 VY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQAIQ 238
               K  + I +LVA +V  L    +TV D+ G+ L     +  + G            +
Sbjct: 184 KLDAKQLQGIVNLVAMSVEGLTPDHITVTDTAGQSLYQPRGDGGLDGLTTTQFEYKNTFE 243

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
             +E  + + L   LG     + V AEL+   + IR+ +YDP++ V RS + S+++    
Sbjct: 244 SNLENRLEQILTPILGPGRSLAKVNAELDFAQRTIRKELYDPNATVVRSEQKSEESTSGT 303

Query: 299 TSQPESAVTVE-----QNMPHVS--DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
            +   S VT       Q +P+ +          S + ++++ + +NYEIN +        
Sbjct: 304 AAVDASGVTTTPRGGGQAVPNTNFRGEGYSGTESTQKSNRENKTTNYEINKEEQNVVTPV 363

Query: 352 YKLERLSIAVVVNKGRLTEVLGRS-ADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
             L+R SIAV+V+         ++     +    L  I +IV+ A G+++ RGD I ++S
Sbjct: 364 GDLKRQSIAVIVDGTYEKVEGTKNWKFVPRSAEELERIKQIVARAAGLDAARGDEIQVSS 423

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
            +F         ++  + ++   R     IN L+  +  +LV    + AL R    ++  
Sbjct: 424 FEFGAPDGSAEPSLVQTMLEYAQRLGKPFINGLLIFLFLILVVRPVVLALIRPRVTEEEI 483

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
           +                  T   +P     L  +       +  +         + +   
Sbjct: 484 E------------------TLERLPEGEARLALAEAVESEEAAAMLEP--GRQFELAKHL 523

Query: 531 LLHMIEINEERFAKILRKWARSE 553
            L + E N E+   +L+ W + E
Sbjct: 524 ALQLFEENMEQSISLLKSWLKQE 546


>gi|303248346|ref|ZP_07334607.1| flagellar M-ring protein FliF [Desulfovibrio fructosovorans JJ]
 gi|302490254|gb|EFL50168.1| flagellar M-ring protein FliF [Desulfovibrio fructosovorans JJ]
          Length = 546

 Score =  378 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 127/563 (22%), Positives = 236/563 (41%), Gaps = 39/563 (6%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
            ++L+Q++ + T+  R   ++L  +    +  F+   +F+N P    LY +L   D  R+
Sbjct: 9   FEKLIQYWSNRTAAQR---ILLGGLAASTVAAFLVMIYFLNQPEMRVLYTRLAPEDAARV 65

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L  +   + + DNG++I VP+  V + R+ +A +GL       G+ELFD++   G T
Sbjct: 66  VEQLKASKTPYELRDNGATIMVPAESVYEQRLKIAGEGL-MHGQGVGFELFDQL-KVGQT 123

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
            F+Q I   RAL+GE+ARTI     +  ARVH+V+P    F +   + +ASV++      
Sbjct: 124 DFVQRINYTRALQGELARTITEFPQVEKARVHLVLPQKSLFIEEQKQASASVVLTLKRGQ 183

Query: 184 VY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQAIQ 238
               K  + I +LV+ AV  L    +T+ D+TG+ L   + +  + G            +
Sbjct: 184 KLDAKQLQGIVNLVSMAVEGLTPEHITITDTTGQSLYQPQGDSGLAGMSNSQFEFKNTYE 243

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
             +E  I + L   +G          +L+   + IR+ +YDP+  V RS + +++     
Sbjct: 244 SNLENRIEQLLTPIVGPGRSIVKANVDLDFSQRTIRKELYDPNVTVVRSEQKNEETTSGT 303

Query: 299 TSQPESAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDN 351
            +   S  TV       +               S + + ++   +N+EIN +        
Sbjct: 304 AAVDASGQTVTPRGGGAAVPNNNFQGSGYSGTESTQKSSRQNSTTNFEINKEEQNVVTPV 363

Query: 352 YKLERLSIAVVVNKGRLTEVLGRS-ADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
             L+R SIAV+V+   + +    +     +    L  I ++V+ A G++  RGD I ++S
Sbjct: 364 GDLKRQSIAVIVDGTYVKDKDKETYTFVPRKAEELERIKQVVARAAGLDPSRGDEIQVSS 423

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
            +F      +  ++  + ++   R     +N L+  +  +LV    + AL R    ++  
Sbjct: 424 FEFGAPDGSDQPSLVQTMLEYAQRLGKPFLNGLLLFLFLILVVRPVVLALIRPRVTEE-- 481

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
                    L   P   A      P ++  L               +             
Sbjct: 482 -----EIETLERLPEGEARLALAEPEESEGLGMLEGGKELELAKNLA------------- 523

Query: 531 LLHMIEINEERFAKILRKWARSE 553
            L + E N E+   +L+ W + E
Sbjct: 524 -LQLFEENMEQSMTLLKAWLKQE 545


>gi|259417522|ref|ZP_05741441.1| flagellar MS-ring protein [Silicibacter sp. TrichCH4B]
 gi|259346428|gb|EEW58242.1| flagellar MS-ring protein [Silicibacter sp. TrichCH4B]
          Length = 571

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 156/573 (27%), Positives = 244/573 (42%), Gaps = 35/573 (6%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           + Q+   +    +  R R++ + + + V I  F       N P    LY  LE S    +
Sbjct: 14  VQQIKNVWAGLDT--RKRMMAIGATLAV-IFTFFLMSMVANKPSMQLLYAGLESSSAGDV 70

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
             AL ++ +D+ +   G SI VPS+   + R+ LA+QGLP++    GYEL D ++ FG T
Sbjct: 71  VSALEQSGVDYEVR--GGSIYVPSNKRDELRMTLASQGLPANGGK-GYELLDSLSGFGTT 127

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN-P 182
           S M +    RA EGE+ARTI +   +  ARVHI       F++    PTASV +  +  P
Sbjct: 128 SQMFDAAYWRAKEGELARTIVANPHVSQARVHIANTGSNPFQRTIE-PTASVSVTPMGTP 186

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242
                A AIR LVA+AV  L + +V V+D+ G L+ + E        +    Q     + 
Sbjct: 187 ITPAQANAIRFLVASAVAGLAVDNVAVIDANGALIGSPEAAAAAGAGTDDRSQT----LR 242

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
             + + + A +G  N    +  E   DT+ IRE + DP S+V  S  + +    S+    
Sbjct: 243 ERVLRLVEARVGHGNAVVEISVETVTDTESIREKLVDPQSRVAISTDVEERTDSSQN--Q 300

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
              VTV  N+P           S  NT+   E+ NYEI+            ++RL++AV+
Sbjct: 301 AGEVTVASNIPDGDAGN--GEGSRANTNATRERVNYEISETEKEIVRGPGAIKRLTVAVL 358

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           +N        G++  + + D  L  + +++SAA G ++ RGD IT+ SMD L N      
Sbjct: 359 INGVTTPTADGQATFEPRPDEELDALRELISAAVGFDAERGDVITLKSMD-LPNVEPEGT 417

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482
            V  S  D L     ++I      V  L++    +  +   +           G +    
Sbjct: 418 AVTSSMFDNLYFDVMSIIQMAALAVVALILGLFVVRPILAGNGASVQALPSPDGMAAGGL 477

Query: 483 P--PISSAVTTGLMPNDNIA--------LDSSNQDIFSHSRNLQSRINSY--------VS 524
           P  P       G M N ++         +DS     F     L    +          +S
Sbjct: 478 PELPNMGGGDAGFMTNPDLGSNIALDGEIDSGGDGQFQPLGGLPGMGDGLATFGGGGGMS 537

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDR 557
                RL  MI   +E   +ILR W     E+R
Sbjct: 538 DDPVDRLRSMIGERQEETVQILRGWLEENNEER 570


>gi|462109|sp|Q04954|FLIF_CAUCR RecName: Full=Flagellar M-ring protein
 gi|144247|gb|AAA66325.1| flagellar M-ring protein [Caulobacter crescentus CB15]
 gi|13422171|gb|AAK22889.1| flagellar M-ring protein [Caulobacter crescentus CB15]
          Length = 536

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 130/524 (24%), Positives = 240/524 (45%), Gaps = 18/524 (3%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            F+     + LY  L++ + + ++ AL +A I +    +GS+I VP   V  AR+ +A +
Sbjct: 17  MFMGKEPSELLYSNLDLKEASEVTQALDQAGIKYETKGDGSTIMVPRDKVASARLMVAGK 76

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GL SS S  GYE+FD  N+ G T F+Q++ R RAL+GE+ RTI+++ G+ + RVH+V+P 
Sbjct: 77  GLVSSGS-IGYEIFDTNNALGQTDFVQQLNRQRALQGELERTIKAMQGVNSVRVHLVLPK 135

Query: 161 MGSFRKIGARPTASVMI-RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
              F +   +P+A+V I             AI++LV+++VPN+    V V+D  GK L+A
Sbjct: 136 RQLFEEDAEQPSAAVTIGVGSREPSSDMVRAIQNLVSSSVPNMKAEKVAVIDQHGKTLSA 195

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
              E      +      ++  I   +   +   LG    R  V AEL+++    +E  +D
Sbjct: 196 PSDESLAGKMAQDRKSEVEARIAKTVKDMIEGVLGPGKARVNVTAELDLNRVTTQEERFD 255

Query: 280 PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYE 339
           PD +V RS   ++ + +   +   + VT   N+P          +    T + +  +NYE
Sbjct: 256 PDGQVIRSESTTEASSQENKNDDNAGVTAAANVPGGQGAN-GFQQLGSRTGQNDAVTNYE 314

Query: 340 INTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG--RSADQGKIDSYLAEINKIVSAATG 397
           I+     T  +   ++++++AV ++             A   +    + +I ++V  A G
Sbjct: 315 ISKSVTTTVQEPGTIKKIAVAVAIDGVSAPMAADGKPGAYTPRTAQEIQQIEELVKTAVG 374

Query: 398 INSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457
            ++ RGD + +T++ F   Q  + G  +   +    ++   ++ A    V  ++   + L
Sbjct: 375 FDAERGDQVRVTNIKF--PQPEDQGLEEQGLLAGFDKN--DIMRAAELGVLAVVALLILL 430

Query: 458 HALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS---- 512
            A+R  + N+     G++        PP++  VT        + +D S + I        
Sbjct: 431 FAVRPFIKNLSAPAPGQIALAGPSGGPPVTRLVTLADGTQQQVVVDQSGEPIALAGPPVS 490

Query: 513 ----RNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
               R   ++I   V   S  R+   +E + +    ILR W   
Sbjct: 491 DIDQRIDIAKIEGQVKASSIKRVSEFVEKHPDESVAILRNWLHE 534


>gi|121608098|ref|YP_995905.1| flagellar M-ring protein FliF [Verminephrobacter eiseniae EF01-2]
 gi|121552738|gb|ABM56887.1| flagellar M-ring protein FliF [Verminephrobacter eiseniae EF01-2]
          Length = 562

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 134/566 (23%), Positives = 245/566 (43%), Gaps = 53/566 (9%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
           +++  ++L R + + L + + + ++  +AA    + P Y  L+  L   D   I   LS+
Sbjct: 26  WWQRLSALNRAQRMRLGAGVALLVLAAVAALVLGHQPDYRVLFGNLSDKDGGTIVAQLSQ 85

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
            N+ +R+++ G +I VP+  V + R+ LA+QGLP  S   G+EL +  + FG+T F + +
Sbjct: 86  MNVPYRLAEGGGAILVPADRVHEVRLRLASQGLPKGSV-VGFELMES-SKFGVTQFQERL 143

Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE 189
              R LEGE+ R+IQ++S + +ARVH+ +P+   F +   +P+ASV++        + A+
Sbjct: 144 NFRRGLEGELTRSIQALSPVQSARVHLALPEQNGFFREQQKPSASVLVSLYPGRFLERAQ 203

Query: 190 --AIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAIQHEIEMN 244
              I HLVAA+VP +    V+VLD TGKLL+       +  +  + L  VQ I+ +    
Sbjct: 204 LAGIVHLVAASVPEMAPSAVSVLDDTGKLLSRSPDGAADAEVNAQQLLHVQRIEQQYTRR 263

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVY----DPDSKVERSIRLSKDAQRSE-- 298
           I   L   +G DN ++ V A+++    +     +     P+S   RS +L +    +   
Sbjct: 264 ILDILEPVVGRDNVKAQVTADVDFTQTESSSEQFRPNQQPESGAVRSQQLLESRSGANKL 323

Query: 299 --------TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
                   ++QP    T   N P+ +          E T+K+E  +NYE++         
Sbjct: 324 PTGIPGAVSNQPPVPSTAPINGPNPAPNAGGQQGPDEQTNKRESTTNYELDRTVRVVRGS 383

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
              ++RLS AVVVN   + +  GR+  +      + ++  +V  + G +S RGD++ + +
Sbjct: 384 TGTVKRLSAAVVVNYQSVLD-KGRAVSRALTPEQIGQMTALVRESIGFDSARGDSVNLMN 442

Query: 411 MDF---LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
             F   +      +   + + +D+       V   L   +  L + +  L   R +    
Sbjct: 443 TPFQLTVTPPEALAWWQRPALIDLAKTLAWPVGALLFAALVLLGLVWPVLRPPRAVAGRQ 502

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
                    +    P PI                   N+ +      L+ +         
Sbjct: 503 LDALEAETPERPALPAPIIR-----------------NEPLLPTPEQLRLQEA------- 538

Query: 528 DLRLLHMIEINEERFAKILRKWARSE 553
                 +   N    A IL+ W   E
Sbjct: 539 ----RALARENPAAVANILKTWLSGE 560


>gi|295690740|ref|YP_003594433.1| cyclic nucleotide-binding protein [Caulobacter segnis ATCC 21756]
 gi|295432643|gb|ADG11815.1| cyclic nucleotide-binding protein [Caulobacter segnis ATCC 21756]
          Length = 532

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 133/524 (25%), Positives = 238/524 (45%), Gaps = 19/524 (3%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
             F    P+ + LY  L++ + + ++ ALS+A I F    +GS+I VP   V  AR+ +A
Sbjct: 16  IMFMGKEPN-ELLYSNLDLKEASEVTQALSQAGIKFETKGDGSTIMVPRDKVASARLMVA 74

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
            +GL SS S  GYE+FD  N+ G T F+Q++ R RAL+GE+ RTI+++ G+ + RVH+V+
Sbjct: 75  GKGLVSSGS-IGYEIFDGGNALGQTDFVQQLNRQRALQGELERTIKAMQGVNSVRVHLVL 133

Query: 159 PDMGSFRKIGARPTASVMI-RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
           P    F +   +P+A+V I             AI++LV++AVPN+    V V+D  GK L
Sbjct: 134 PKRQLFEEDSEQPSAAVTIGVGSREPSTDMVHAIQNLVSSAVPNMKAEKVAVIDQHGKTL 193

Query: 218 TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
           +A   E     ++       +  I   +   +   LG    R  V AEL+++    +E  
Sbjct: 194 SAPSDESLAGKEAQDRKVEAEARIAKTVKDMIEGVLGPGKARVNVTAELDLNRVTTQEER 253

Query: 278 YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSN 337
           +DPD +V RS   ++   +   ++  S  T   N+P           S    +  E  +N
Sbjct: 254 FDPDGQVVRSESTNESNSQENKNEDNSGATATANVPGQGAGGFQQLGSRAGAN--ESVTN 311

Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG--RSADQGKIDSYLAEINKIVSAA 395
           YEI+     T  +   ++++++AV ++             A   +    + +I ++V  A
Sbjct: 312 YEISKSVKTTVQEPGTIKKVAVAVAIDGVTAPPGKDGKPGAYTPRSAQEIQQIEELVKTA 371

Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455
            G ++ RGD + +T++ F   Q  + G  +   +    ++   ++ A    V  ++   +
Sbjct: 372 VGFDAARGDQVKVTNIKF--PQAEDQGLEKQGLLSGFDKN--DIMRAAELGVLGIVAILI 427

Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS--- 512
            L A+R     + ++   V      S  P++  +T        + +D S + +       
Sbjct: 428 LLFAVRPFIK-NLSEPNVVAALPSGSGQPVTRMITLSDGTQQQVVVDESGEPLAIAGPVS 486

Query: 513 ----RNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
               R   ++I   V   S  R+   +E + E    ILR W   
Sbjct: 487 DIDQRIDIAKIEGQVKASSIKRVSEFVEKHPEESVAILRNWLHE 530


>gi|296135691|ref|YP_003642933.1| flagellar M-ring protein FliF [Thiomonas intermedia K12]
 gi|295795813|gb|ADG30603.1| flagellar M-ring protein FliF [Thiomonas intermedia K12]
          Length = 568

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 119/570 (20%), Positives = 227/570 (39%), Gaps = 36/570 (6%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           L     +   +   + L   + +   I L +    + +   Y  LY  L   D   +   
Sbjct: 9   LQDPLGAFRQMNMNQRLTWLAGLAALIALVIVTLMWTSRLDYQVLYTNLSERDGGAVIGE 68

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L + NI +RI+  G+ I VPS+ V   R+ LAA GLP   +  G+E+ D     G + F+
Sbjct: 69  LQKLNIPYRITGGGAVIEVPSAQVYATRMKLAANGLPK-GAGVGFEVLDHE-PMGTSQFV 126

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
           + +   RALEG + RTI+S+S + +A VH+ +P    F     +P+ASV+++     V  
Sbjct: 127 ERVNYQRALEGSLGRTIESLSAVQSATVHLAIPKPSVFLSEAEKPSASVLLKLYPGRVLS 186

Query: 187 --SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEM 243
                 I HLV++AV  L   +V+V+D  G LLT+ +  +  I    L     I+ +   
Sbjct: 187 GAQVAGIVHLVSSAVAGLGDKNVSVVDQDGNLLTSGQRADSGIQPDQLMYRNTIEQQYRK 246

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE----- 298
            I   LA  +G +  R AV A+++    +   +VY     + +  + +  +         
Sbjct: 247 QIEALLAPLVGNEGVRVAVSADIDFAKTESSSVVYGQGHLLSQQQQSTNSSGGGTLPAGV 306

Query: 299 ----TSQPESAVTVEQNMPHVSDRKVPLPRS---------LENTDKKEEQSNYEINTKSI 345
               ++QP   VT    M   S    P   +                   SNY+++    
Sbjct: 307 PGALSNQPPGGVTAPFVMGTASAPLTPQQLTQITPSLKTLAPTAASSSATSNYDLDKTVS 366

Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
            T      ++RLS++V+VN                  + L ++ ++V  A G +++RGDT
Sbjct: 367 HTQQPVGSVKRLSVSVLVNDQAKGGK-----PVPLSAAQLGQMKQLVENAIGFDAKRGDT 421

Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL---RR 462
           ++I +M F   Q      + +     +       +  ++ L+  L+       A     +
Sbjct: 422 VSIVNMPFTAAQKEAEKQLPLWRQAWVWDGVRQAVPYVIALILGLMAYRAMRKATSGDVK 481

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
                  +  E+   +    P      ++G      +A       +   +  L + + + 
Sbjct: 482 AKRRKGKEAAELDETAREETPSDGMQKSSGPGAGAEMAASGVPGALAPDTVQLSNTLETD 541

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARS 552
            +         +++ +  R A+++++W   
Sbjct: 542 AAIS-----RELVKQDPRRAAQVVKEWLSD 566


>gi|256830792|ref|YP_003159520.1| flagellar M-ring protein FliF [Desulfomicrobium baculatum DSM 4028]
 gi|256579968|gb|ACU91104.1| flagellar M-ring protein FliF [Desulfomicrobium baculatum DSM 4028]
          Length = 537

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 142/556 (25%), Positives = 256/556 (46%), Gaps = 35/556 (6%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
             L +   F+   +   R   ++L  +++  ++ F    F++N   Y  LY +L   D  
Sbjct: 7   NTLAKATDFWTDKSLAQR---ILLGGLLVSLLIAFFVMIFWMNKVDYRVLYSQLYQDDAA 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            +   L +  I ++I+D+G++I VP  MV +ARI LA +G        G+ELFD+ NS G
Sbjct: 64  SVVSYLQKEKIPYQITDSGATIMVPGDMVYEARIKLAGEG-SLHGQGIGFELFDE-NSIG 121

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
            T+F+Q I   RAL+GE++RTI  +S + +ARVH+V+P+   F +  A P+A++M++   
Sbjct: 122 QTNFVQGINYQRALQGELSRTISELSEVESARVHLVLPNKSLFVEEQAPPSAAIMLKLKG 181

Query: 182 PSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQA 236
                 +  +AI +LV+ +V  +    +T+ DS GK+L   + + +I G     L    +
Sbjct: 182 GRSLGAQQVQAIVNLVSTSVEGMSAEHITLADSRGKILYEPKTDTDIAGLSSTQLEYQTS 241

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           +Q  +E  I + L   +G     + V A+L+ D   IR+ ++DP S V RS   +++  +
Sbjct: 242 MQRSLEQRIEQLLLPIVGPGRVIARVNADLDFDRTTIRKEIFDPKSAVVRSEVKNEEESK 301

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
              +      T + N    +DR      + + + +    +N++IN +          ++R
Sbjct: 302 GSANVDGG--TPDPNYQGENDRTASG--TAQESVRTSSTTNFDINKEEQQIIAQVGSIKR 357

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           LS+AV+V+   + +  G  A +      + +I ++   A G +  RGD I ++S+ F E 
Sbjct: 358 LSVAVLVDGKYIQQQDGTYAFEPLNAEQMEQIRQLSQRAVGFDDARGDAIEVSSISFGEP 417

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476
                G  Q   +D+ SR+F  +   L+  +  LL        +          K  V  
Sbjct: 418 ----VGAEQAPLLDVASRYFQLLGKPLLNTLIILLFLLFVARPVVLALIRPKVDKPTVQT 473

Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536
              L       A+T GL   D  A+D+  +             N+    Q       ++E
Sbjct: 474 ADQLGAAQELMALTEGLNEEDMAAVDAVKRIE-----------NAKHLAQ------QLVE 516

Query: 537 INEERFAKILRKWARS 552
            N ++   I+R+W   
Sbjct: 517 QNMDQAVMIMRQWMTQ 532


>gi|77918796|ref|YP_356611.1| flagellar M-ring protein FliF [Pelobacter carbinolicus DSM 2380]
 gi|77544879|gb|ABA88441.1| flagellar M-ring protein FliF [Pelobacter carbinolicus DSM 2380]
          Length = 519

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 134/553 (24%), Positives = 233/553 (42%), Gaps = 50/553 (9%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
               ++     R R L L +V+L  ++ F A  F  N   Y  L+  L+ +D   +   L
Sbjct: 8   KNLIETIRQWPRKRQLSLLAVVLACVVFFAAIIFQANKADYQMLFGNLDSADAAAVVDRL 67

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
            E  + +R+   G +I +P+  V + R+ +A  GLP      G+E+FDK  SFG+T F Q
Sbjct: 68  KEQKVPYRLEHGGRAIFIPADKVYEIRLAMAGSGLPRGGG-VGFEIFDK-QSFGMTDFAQ 125

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187
           +I  +RAL+GE++RTI S++ + AARVH+ +P+   FR    + +ASV+++       + 
Sbjct: 126 KINYLRALQGELSRTIASLAPVEAARVHLALPEKRLFRDQQQKASASVIVKLATGQSLRE 185

Query: 188 AE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS---LSIVQAIQHEIE 242
            +   I +LVA +V  LD+  V V+D  G++L+         G +   L   Q ++  +E
Sbjct: 186 TQILGIVNLVAGSVDGLDVDQVAVIDDNGRVLSQTADHSGTGGTAPDMLEYQQNLEQRLE 245

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
           +     L   LG+ N    V A ++   ++  E  YDP+    RS + S +  +   +  
Sbjct: 246 LRAQALLDRALGMGNSMVQVTAAIDYTQRERMEESYDPNQTAVRSEQSSSE--KGGVANA 303

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
                V+ N+ +       +P     T +  E  NYEI+            ++ LS+AV+
Sbjct: 304 GGVPGVQTNIKNEKAGNSFIP-----TSRSNETINYEISKVVSKQVDSVGSIKNLSVAVL 358

Query: 363 VNKGRL---TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           V    +    +     + Q +    LA I K++S A G+N  RGD I + S  F E    
Sbjct: 359 VADRPVDNQGDTDKAPSYQPRDPKELAAIEKMISRALGLNPDRGDQIAVISRPF-ETAFN 417

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
           +   V+ S    + +    +  AL+ L   L   F  +  L ++   D        G  +
Sbjct: 418 SEPLVKSSPWSRIYQMVPMIKYALLALTAGLFY-FFVIRPLLQILRGD--------GPMV 468

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
                +    +      D  A       + S   + Q                     + 
Sbjct: 469 EHYKTVEQLESEMAGLPDGSAAQEPPLSLPSGQPSEQ--------------------KDP 508

Query: 540 ERFAKILRKWARS 552
              A+I++ W + 
Sbjct: 509 ---AQIIKAWLKD 518


>gi|149377888|ref|ZP_01895617.1| flagellar M-ring protein FliF [Marinobacter algicola DG893]
 gi|149357830|gb|EDM46323.1| flagellar M-ring protein FliF [Marinobacter algicola DG893]
          Length = 565

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 117/561 (20%), Positives = 236/561 (42%), Gaps = 45/561 (8%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
                   L   R + L   +   + L +A   +   P+Y  +   +   +   ++  L 
Sbjct: 27  DLIFGFNRLNLLRQVGLMVGLAASVALGVAVVLWAQEPNYQPVVGDMSGYNPQDVTTILD 86

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
             +ID+R+     ++ VPS  V  AR+ LAA+G+ +     GYEL D+    G + FM+ 
Sbjct: 87  ANSIDYRMDPRTGALLVPSDEVYNARLKLAAEGV-TDEQTMGYELLDQDRGLGTSQFMET 145

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA 188
           I+  R LEGE+ARTI S+  + AARVH+ +P+   F +    PTASV +  I     +  
Sbjct: 146 ISFRRGLEGELARTIGSMRTVRAARVHLAIPERSVFVRDARTPTASVFLEVIAGRRLEQE 205

Query: 189 E--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMN 244
           +  +I +LVA ++P +   +VTV+D +G LLT   +  +   +         ++  +   
Sbjct: 206 QIASIVNLVAGSIPEMSKDNVTVVDQSGNLLTGREDGGDSQQIEDQYDYTSRVEDRLARR 265

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           +   +   +G   FR+ V A+L+  + +  E +++P+ +  RS R   +  R        
Sbjct: 266 VASMVRPVVGDGRFRAEVTADLDFSSVEQAEELFNPEQQAVRSERQMSE--RRAGGGASG 323

Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTD--------KKEEQSNYEINTKSIATTHDNYKLER 356
                 N P           + +  +        ++E   NYE++        +  +++R
Sbjct: 324 IPGALSNQPPAQPTVPEQATADDEGNVQAPPVNVREESTRNYEMDRTVSYIRQELGRIKR 383

Query: 357 LSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           LS+A+ V+  ++ +   G  + +   +  L  +  +V  A G ++ RGD++T+ +  F  
Sbjct: 384 LSVALAVDDMKVVDPQTGEVSYEPWPEQELQRLTMLVRDAVGYSAARGDSVTVMNTAFAA 443

Query: 416 NQLFN----SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471
            +       +   Q  F D++ +  A ++  ++ L             L+ L     +++
Sbjct: 444 EEQIEFEAPAFWEQPWFWDLMKQVLAGLVILVLVLGLL-------RPTLKSLSGGGRSER 496

Query: 472 --GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
                 G   L       A+   +   D++ L  +         +   ++N+        
Sbjct: 497 RGDSDDGYGGLDGIEGGDALREAMHSQDDLLLPGAT-------DSYDRQLNA-------- 541

Query: 530 RLLHMIEINEERFAKILRKWA 550
            L  +I  +  R ++++R+W 
Sbjct: 542 -LKGLIAEDPARVSQVMRQWV 561


>gi|307944136|ref|ZP_07659477.1| flagellar M-ring protein FliF [Roseibium sp. TrichSKD4]
 gi|307772482|gb|EFO31702.1| flagellar M-ring protein FliF [Roseibium sp. TrichSKD4]
          Length = 537

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 148/552 (26%), Positives = 254/552 (46%), Gaps = 20/552 (3%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++ L++F K   +LG TR+  + +V  + + +F      V +P    LY  L + D   I
Sbjct: 1   MNGLIEFIK---TLGPTRVAAMGAVAAMLVGIFAFIILRVTAPQMTTLYSDLTLEDSGAI 57

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    + + +  NG+++ VP   V + R+ LA  GLP+  S  GYE+FD+ ++ G T
Sbjct: 58  VSRLEGMGVPYELGRNGATVMVPRERVARLRMQLAEDGLPTGGS-IGYEIFDRSDTLGAT 116

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
           SF+Q I  +RALEGE+AR+I +I  I +ARVH+V+P+   F++    PT S+++      
Sbjct: 117 SFVQNINHLRALEGELARSIAAIDRIQSARVHLVIPERQLFQRDQRAPTGSIVLNVRGTL 176

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSL-SIVQAIQHE 240
                 A++HLVA AV  L    V+V+D TG+LL +     E  I+G SL   V AI+  
Sbjct: 177 GQGEIRAVQHLVATAVEGLRPESVSVVDETGRLLASGAESDEEGIIGNSLQERVFAIESR 236

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           ++  + + L++ +G    R  V A+++ +        +DP+ +V RS +  ++A  S   
Sbjct: 237 LKGQVEEILSSVVGPGRSRVRVAADVDFNRTTETIETFDPEGQVVRSTQTKEEASSSTER 296

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
             E  VTV   +P+  D       S E T   EE  NYEI+  +     +  +++RLS+A
Sbjct: 297 TNE--VTVGNELPNGGDNNG-GEGSNEETTATEEIVNYEISRSTKTEIVEAGRVQRLSVA 353

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           V+V+        G      +    L  I  +V +A G +  RGD + + ++ F      +
Sbjct: 354 VLVDGTYGPNADGEVVYTPRTQETLDRIALLVRSAVGFDEGRGDIVEVVNLQFAAPPQGD 413

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
                  F              ++ L+  LL+ F+    LRR+   ++ +  E      L
Sbjct: 414 LTEEPGLFEFTKEDIMRFAELGVLLLISLLLLLFVVRPLLRRIVTPEEPQPQE------L 467

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
              P    +    +P++    D+   D        +++        S  ++  MIE +  
Sbjct: 468 LIGPDGQLIAESEVPSE----DAEEDDEMRIEWLEEAKAAGAAQATSISKVGEMIEEHPT 523

Query: 541 RFAKILRKWARS 552
               I+R W   
Sbjct: 524 EAVTIVRGWLDE 535


>gi|329849956|ref|ZP_08264802.1| flagellar M-ring protein FliF [Asticcacaulis biprosthecum C19]
 gi|328841867|gb|EGF91437.1| flagellar M-ring protein FliF [Asticcacaulis biprosthecum C19]
          Length = 554

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 143/553 (25%), Positives = 238/553 (43%), Gaps = 11/553 (1%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
            FF      G  R+  +         + +A    +++     LY  L++ + + I+ ALS
Sbjct: 3   SFFNGLQRFGIGRLTAILGAAAGIAAVILAIVLNISAQPQSLLYSNLDLKEASEITTALS 62

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
           +  I +    +GS+I V    V +AR+ LA++GLP+ +S  GYE+FD   + G T  +Q 
Sbjct: 63  QGGIKYEAKGDGSTIMVNRDQVAEARMMLASKGLPTQAS-VGYEIFDDAPALGQTEAVQN 121

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTA-SVMIRAINPSVYKS 187
           I   RALEGE+ARTI+++ GI +ARVH+VMP    F     +PTA  V+  +      +S
Sbjct: 122 INNQRALEGELARTIRTLRGISSARVHLVMPKRELFEDAAGQPTASVVLGLSGGSLSSES 181

Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIVQAIQHEIEMNIN 246
             AIR++VA AVPNL   +VT++D    LL A     + +G    +    I+  +   + 
Sbjct: 182 VAAIRNVVATAVPNLKADNVTIVDDRNHLLAAGGDSDSAMGVAGSARKSEIEDSVRKRVM 241

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306
           + +   +G    R  V AE++       ++ Y+PD +V RS   +   + +         
Sbjct: 242 EIVEGVVGPGAARVMVTAEIDQTATTREQVEYNPDGQVVRSTSTNSGTETTADPNSAGQT 301

Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
           T   N+P    +   L  S  ++ +  E +N+EI+T          ++++L++AVVV+  
Sbjct: 302 TATANIPGTQ-QAPNLSTSGNSSQQDSEVTNFEISTTKTTEVKAPGEIKKLAVAVVVDGV 360

Query: 367 RLTEVLGR--SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424
                 G+   A   +    +  I ++V AA G +  RGD + ++++ F           
Sbjct: 361 ETPSADGKAPPAYAPRSAEDMQRIQELVQAAVGYDQTRGDQVRVSNIRFSRGDFAAGTDA 420

Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG-----EVGGKSI 479
           +    D         I   V  +  LLV FL    L +  N   A  G       GG   
Sbjct: 421 KPPLFDFDKNDIMRAIEVAVLFIVALLVIFLIARPLLKFINGGGAAGGNFLGTANGGSQA 480

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
                  +  +      DNIA            R   +RI   V   S  ++   ++ + 
Sbjct: 481 ALAGAAVTGPSISYQAADNIAATGLVPTQEQEQRIDIARIEGQVKASSVKKVSEFVDRHP 540

Query: 540 ERFAKILRKWARS 552
           E    ILR W   
Sbjct: 541 EESVSILRSWLHD 553


>gi|269836582|ref|YP_003318810.1| flagellar M-ring protein FliF [Sphaerobacter thermophilus DSM
           20745]
 gi|269785845|gb|ACZ37988.1| flagellar M-ring protein FliF [Sphaerobacter thermophilus DSM
           20745]
          Length = 535

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 131/555 (23%), Positives = 238/555 (42%), Gaps = 32/555 (5%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           Q+ +   +   L   + + + +V++  +M             Y   +  L   D   I  
Sbjct: 5   QIERIRNAWNRLSMNQRVAVIAVVITAVMALGLLIATRPPQRYGIAFSGLSSEDAAAIVE 64

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L    I + +S +G +I VP+  V   R+  A+QGLP   S+ G+ELFDK +S GLT F
Sbjct: 65  NLRAQGIPYELSSDGGTIRVPADQVAAVRLDAASQGLPRGGSD-GFELFDK-SSLGLTDF 122

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
            Q +   RA+EGE+ RTI  I  + AARVHIV+P+   F +     TA+V+++  +    
Sbjct: 123 TQRVNYQRAIEGELERTIAKIDAVEAARVHIVIPEESLFIEEQQPTTAAVVLKLKSGRQL 182

Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGK-LLTANEMERNILG--KSLSIVQAIQHE 240
                  I HLV+ AVPNL   ++TV+D+TG  + +  +      G  +   + QA +  
Sbjct: 183 TEAQIRGITHLVSGAVPNLQPENLTVIDNTGNPIWSGPDGGSQFAGLDERFRLQQAYEQN 242

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSIRLSKDAQRSE 298
           +E  +   +    G  +    V A LN D +  +  +Y PD      RS +  +      
Sbjct: 243 LERQLQALVNPIAGPGHAVVRVSATLNWDERSSQSEIYSPDGLQPQVRSQQEREQRTSGT 302

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
            ++      V++N+   +  + P   S   +  +E  +NYE++ +         +++RLS
Sbjct: 303 VTETGGVPGVDENV--QTFPETPGAGSQSESSSREVTTNYELSRRIEEVVQAPGQVQRLS 360

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           +AV+++  ++   +              EI  ++SAA G+  +RGDTIT+T++ F  + +
Sbjct: 361 VAVMLDGSQVDPAVA------------QEIQDVISAAAGLVPQRGDTITVTAVPF--SDV 406

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
            N   +      IL  +  T +  L  +   L+  +     L +         GE+    
Sbjct: 407 GNRELIPDGGTPILE-YALTALKVLGLIAIPLVALYFARRVLVKPE-----DAGELTPAL 460

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
                P  +      +    I +  +   +       QS         + L+++ +   +
Sbjct: 461 ATVGGPAVTEPPMPALATQRITISETPPQLEDEDP-SQSTDRGLPQLPAHLQVIELANTD 519

Query: 539 EERFAKILRKWARSE 553
             + A++LR W   E
Sbjct: 520 PAQVAQLLRAWMSEE 534


>gi|117923585|ref|YP_864202.1| flagellar M-ring protein FliF [Magnetococcus sp. MC-1]
 gi|117607341|gb|ABK42796.1| flagellar M-ring protein FliF [Magnetococcus sp. MC-1]
          Length = 551

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 133/560 (23%), Positives = 228/560 (40%), Gaps = 42/560 (7%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           L   F S    GR  ++I A   +  + +  A  +F   P    LY  L   +  RI   
Sbjct: 19  LGGLFGSLPLTGRNGVIIAA---MASVFILAAIIWFATRPSMKVLYSGLPDLESARIVEQ 75

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L +  + + +   G++I +P   V   R+ +A  GLP S+   G+E+FD  +  G+T F+
Sbjct: 76  LGKLGVPYELGSGGTTIRIPEDKVYDVRLEMAKAGLPKSTDGVGFEIFDNQSLMGMTDFV 135

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
           Q +   RAL+GE+AR+++SI+ +  ARVH+V+P    F       TASV++   +     
Sbjct: 136 QRMNYQRALQGELARSVESIAAVEKARVHLVLPKKSMFAAEERTATASVVMELTHALNKT 195

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME----RNILGKSLSIVQAIQHEIE 242
             + I H+VA+AV  L    VT+LD  G L+   + E    R     +L++    + +IE
Sbjct: 196 QIDGITHMVASAVEGLSQDQVTLLDQKGNLIAGGKTEDLDGRMPTDDALALQSMKEKKIE 255

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
             +   L   LG D     + AEL++D +Q +E  YDPD +V  S     ++ R      
Sbjct: 256 ERVQSLLDRVLGPDKSIIRITAELDLDKKQRQEESYDPDGQVPLSTNTVTESSRGMFGT- 314

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
                V  N P+          S +  D + EQ N+ +  K          + RLS+AV+
Sbjct: 315 GGVPGVIPNDPN-QTAVAGGTGSQQTRDVEREQVNFLVPKKVTTVQEAVGDIRRLSVAVM 373

Query: 363 VNKGRLT--------EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           ++             +    +    +    + ++ +I+    G +++RGD+I +T+  F 
Sbjct: 374 IDGTYEAVKDKDGNIDPEKPAVYTPRSTEEMEQLKRIIMQTVGFDAKRGDSIEVTNTAF- 432

Query: 415 ENQLFNSGTVQVSFMDILSRHF-ATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
                            LSR F   +       +   L+ F  +  L     I + ++ +
Sbjct: 433 ----EPLPPPLDVKSPWLSREFQLEMAKYGAIALLAFLLVFFVMRPLVTKLLIPEEEQDD 488

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
               ++        A   G +P D                   S I   +  +S      
Sbjct: 489 RLPGTVADLERQLLAEGVGTIPVD-------------------SPIRMKIPDRSLQLAQQ 529

Query: 534 MIEINEERFAKILRKWARSE 553
           MI  N E   +I+R W   +
Sbjct: 530 MIADNLEEAREIIRSWMAQD 549


>gi|85058031|ref|YP_453733.1| flagellar basal-body M-ring protein FliF [Sodalis glossinidius str.
           'morsitans']
 gi|84778551|dbj|BAE73328.1| flagellar basal-body M-ring protein FliF [Sodalis glossinidius str.
           'morsitans']
          Length = 568

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 130/555 (23%), Positives = 213/555 (38%), Gaps = 62/555 (11%)

Query: 38  AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97
               +  +P Y  LY  +   D   +   L+  NI +R + N  +I VPS  V + R+ L
Sbjct: 44  VLLLWARTPDYRILYSNISDQDGGAVVAELTTMNIPYRFAGNSDAIMVPSDRVHETRLLL 103

Query: 98  AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
           A +GLP   +  G+EL D+   FG++ F ++I   RALEGEIARTI++++ + +ARVHI 
Sbjct: 104 AQKGLPKGGA-LGFELLDRE-KFGMSQFSEQINYQRALEGEIARTIKTLNPVKSARVHIA 161

Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
           MP    F +     TASV +             +AI  LV+  VP+L  G++T++DS G+
Sbjct: 162 MPKPSLFVREHKPATASVTLTLYPGRALDTGQIQAITWLVSGTVPDLPAGNITMVDSQGQ 221

Query: 216 LLTA-NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LL      E ++    L+  + ++ + +  I+  LA  +G  N R+ V A+L+    +  
Sbjct: 222 LLAQPGNNELDLSTTQLAYTREVEGDFQRRISAILAPVIGAANVRAEVTAQLDFTAVEQT 281

Query: 275 EIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMP----------HVSDRKVP 321
              + P+ + E     S+    S+      P        N P            +     
Sbjct: 282 AEQHKPNGRPEEMAIRSQQLSASDQIGIQAPGGVPGALSNQPTPPATASIESPANAAAGK 341

Query: 322 LPRS---------------LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
            P S                  + + E+  NYE++     +      ++RLS AVVVN  
Sbjct: 342 KPASKDSVPPPAAAAPIVQPPRSSQNEKTINYEVDRTLTHSRFRPGVIKRLSGAVVVNDR 401

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
             +               + ++  +V  A G +S RGDT+ I +  F+ NQ        +
Sbjct: 402 EDSNGN----RVHLTPQEMQDVTALVREAMGFSSERGDTLNIVNTRFVANQDIM---PPL 454

Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486
            F            + L + +  LL        LR L       + E       +  P  
Sbjct: 455 PFWQDPGLQSIAF-SLLRYALVALLFWLAWRKGLRPLWQRQQEIERERIRAQYEASQPR- 512

Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546
                          D       S              + S  +L  +     +  A+IL
Sbjct: 513 ---------------DEPRPISRSELEKETREKARQAMEDSIRQLRDVAAARPQMVARIL 557

Query: 547 RKWARSEIEDRYTQH 561
           R+W       R  Q 
Sbjct: 558 RQWI-----TREQQP 567


>gi|257095338|ref|YP_003168979.1| flagellar MS-ring protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257047862|gb|ACV37050.1| flagellar M-ring protein FliF [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 578

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 131/586 (22%), Positives = 247/586 (42%), Gaps = 64/586 (10%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           + L +  ++   L   + ++L   +   + L +AA   +    +  L+  +   D   I 
Sbjct: 16  NPLDRAREALARLTNRQKVLLIVSVAAVVTLLIAAATLLRQGEFKVLFSNIGERDGGAII 75

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
            AL + N+ ++ S++GS+I V  S V   R+ LAAQGLP   +  G+EL +    FG++ 
Sbjct: 76  AALEQMNVPYKFSESGSAILVHDSRVHDVRLRLAAQGLPRGGA-VGFELMEA-QKFGVSQ 133

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           F +++   R LEGE++RTIQSI+ + AARVH+ +P    F +   +P+ASV++       
Sbjct: 134 FAEQVNYQRGLEGELSRTIQSIAAVQAARVHLAIPKPSVFMREELKPSASVLLNLYPGRS 193

Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKSLSIVQAIQH 239
            +      I++LVAA+VP L    VT+LD +G LL+  +    E  +    +  +Q ++ 
Sbjct: 194 LEPRQIAGIQNLVAASVPQLAPTSVTLLDQSGALLSQMKSKLLEAGLDPTQVKYIQEVEA 253

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVE----RSIRLSKDAQ 295
            +   +   LA  +G  N R  + A+++    +     + P++       RS + S+ A 
Sbjct: 254 SVIKRVEDILAPIVGPGNARVQIAADIDFSQSEQTAETHRPNATPPEISIRSQQSSETAS 313

Query: 296 RSE---------TSQPESAVTVEQNMPHVSDRKVPLPRSLEN------------------ 328
            S          ++QP    T     P V       P +                     
Sbjct: 314 TSPAAQGVPGALSNQPPVPATAPLTQPPVPGAGGAAPATPPVPGQINVAGVQAPVASVGP 373

Query: 329 --TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLA 386
             +  K    NYE++            ++RLS AVVVN+ +     G++ ++   D+ + 
Sbjct: 374 PISTSKNSTVNYEVDKTIRHVRQAVGTIKRLSAAVVVNQRKEVAKDGKAVNKPLPDAEVK 433

Query: 387 EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFL 446
           +I+ +V  A G N  RGDTI++ +  F    + +       + D  +   +   + + + 
Sbjct: 434 QISDLVKEAMGFNKERGDTISVANAPFT---VIDKDEGLPPWRDPET--VSLTKDLVKYG 488

Query: 447 VGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQ 506
           V   ++ +L L  +R L      K                   TT       I + +  +
Sbjct: 489 VIAAIIAYLLLGVVRPLLKTMLEKPA-----------------TTESGVGGRIDVVAGEE 531

Query: 507 DIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
                + NL +       + +  R   + + + +  A I+++W  +
Sbjct: 532 GEEEATENLPTAAELLEKRIAAAR--ALAQQDPQLVANIIKEWTGA 575


>gi|160896087|ref|YP_001561669.1| flagellar M-ring protein FliF [Delftia acidovorans SPH-1]
 gi|160361671|gb|ABX33284.1| flagellar M-ring protein FliF [Delftia acidovorans SPH-1]
          Length = 566

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 123/573 (21%), Positives = 240/573 (41%), Gaps = 61/573 (10%)

Query: 12  KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71
           +  T++ R   L   ++ ++ ++   AA  F   P Y  L+  L   D   I   LS+ N
Sbjct: 22  QRWTAMDRGARLRWGAIAVLLVVALGAAAMFYRQPDYKVLFSNLSDKDGGAIVAQLSQMN 81

Query: 72  IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131
           + +R ++ G +I +PS  V   R+ LA QGLP  S  +G+EL +  + FG+T F + +  
Sbjct: 82  VPYRYTEGGGAILIPSDRVHDVRLKLATQGLPKGSV-TGFELME-NSKFGITQFQERLNF 139

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAE 189
            R LEGE+ R+IQ+++ + +ARVH+ +P+   F +   +P+ASV++      V       
Sbjct: 140 QRGLEGELTRSIQALAAVQSARVHLALPNQNGFFREQQKPSASVLLSLYPGRVLDRTQIA 199

Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNINK 247
            I HLVA++VP +    V++LD +GKLL+ +       +  + L+  Q I+ +    I +
Sbjct: 200 GIVHLVASSVPEMAPTAVSILDDSGKLLSQSPDGNANAVDMQQLNYTQQIEQQYVRRILE 259

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303
            L   +G +N ++ V AE++    +     + P+      V RS ++ +     +  QP 
Sbjct: 260 ILEPVVGKNNVKAQVSAEMDFSQTESTSEQHRPNQSSDAGVVRSQQVVESTGEQKPPQPT 319

Query: 304 SAVTVEQNMPHVS-----------DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
                  N P  +            +      +  +  K+E  +NYE++     T     
Sbjct: 320 GIPGATSNQPPQNASAPVNGANPAPQAADGQNAARSASKRESITNYEVDKTVRHTRGSTG 379

Query: 353 KLERLSIAVVVN------------KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400
            ++RL+ AVV+N                      +A +G   +  A++  +V    G ++
Sbjct: 380 SIKRLTAAVVINAPLVAAPAPAAAGAATDAATVAAAARGLTAAQQAQLLTLVRETVGYSA 439

Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460
            RGD++ + S  F+++++  +        ++L    +  +   + L G +L+  L    L
Sbjct: 440 ERGDSVNLVSTPFVQDEVP-ADVPLWRQPEVLDMARSLGVPIGLALFGAILLLGLVRPML 498

Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520
           +    +    +        L  P +++         + + L+ +                
Sbjct: 499 KGRKTVAVGGQLNAIEGEQLDRPALAAPAVDLSPTQEQVRLEQA---------------- 542

Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                        + + N    A I++ W   E
Sbjct: 543 -----------RQLAKQNPIAVANIVKTWINGE 564


>gi|294339862|emb|CAZ88225.1| putative Flagellar M-ring protein FliF [Thiomonas sp. 3As]
          Length = 568

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 118/570 (20%), Positives = 225/570 (39%), Gaps = 36/570 (6%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           L     +   +   +     + +   I L +    + +   Y  LY  L   D   +   
Sbjct: 9   LQDPLGAFRQMNMNQRFTWLAGLAALIALVIVTLMWTSRLDYQVLYTNLSERDGGAVIGE 68

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L + NI +RI+  G+ I VPS+ V   R+ LAA GLP   +  G+E+ D     G + F+
Sbjct: 69  LQKLNIPYRITGGGAVIEVPSAQVYATRMKLAANGLPK-GAGVGFEVLDHE-PMGTSQFV 126

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
           + +   RALEG + RTI+S+S + +A VH+ +P    F     +P+ASV+++     V  
Sbjct: 127 ERVNYQRALEGSLGRTIESLSAVQSATVHLAIPKPSVFLSEAEKPSASVLLKLYPGRVLS 186

Query: 187 --SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEM 243
                 I HLV++AV  L   +V+V+D  G LLT+ +  +  I    L     I+ +   
Sbjct: 187 GAQVAGIVHLVSSAVAGLGDKNVSVVDQDGNLLTSGQRADSGIQPDQLMYRNTIEQQYRK 246

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE----- 298
            I   LA  +G +  R AV A+++    +   +VY     + +  + +  +         
Sbjct: 247 QIEALLAPLVGNEGVRVAVSADIDFAKTESSSVVYGQGHLLSQQQQSTNSSGGGTLPAGV 306

Query: 299 ----TSQPESAVTVEQNMPHVSDRKVPLPRS---------LENTDKKEEQSNYEINTKSI 345
               ++QP   VT    M   S    P   +                   SNY+++    
Sbjct: 307 PGALSNQPPGGVTAPFVMGTASAPLTPQQLTQITPSLKTLAPTAASSSATSNYDLDKTVS 366

Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
            T      ++RLS++V+VN                  + L ++ ++V  A G +++RGDT
Sbjct: 367 HTQQPVGSVKRLSVSVLVNDQAKGGK-----PVPLNPAQLGQMKQLVENAIGFDAKRGDT 421

Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL---RR 462
           ++I +M F   Q      + +     +          ++ L+  L+       A     +
Sbjct: 422 VSIVNMPFTAAQKEAEKQLPLWRQAWVWDGVRQAAPYVIALILGLMAYRAMRKAASGDVK 481

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
                  +  E    +    P   +  ++G      +A       +   +  L + + + 
Sbjct: 482 AKRRKGKEAAEDDETAREETPSDGTQKSSGPGAGAEMAAGGMPGSLAPDTVQLSNTLETD 541

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARS 552
            +         +++ +  R A+++++W   
Sbjct: 542 AAIS-----RELVKQDPRRAAQVVKEWLSD 566


>gi|225850271|ref|YP_002730505.1| flagellar M-ring protein FliF [Persephonella marina EX-H1]
 gi|225645356|gb|ACO03542.1| flagellar M-ring protein FliF [Persephonella marina EX-H1]
          Length = 529

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 125/560 (22%), Positives = 242/560 (43%), Gaps = 47/560 (8%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           IL +  +F K   +  R   LI+A ++L+  +  +A +  V    Y  LY  L   D   
Sbjct: 6   ILKKTSEFIKKNLN-PRNIALIIAGLLLITFLGIIAFKT-VTKEEYGVLYTHLNPDDAGS 63

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L E NI +++  +GS I VP + V + R+ LAA+GLP S    G+E+F++    G+
Sbjct: 64  ILSVLQEENIPYKVEGDGSIILVPRNKVHEIRLKLAAKGLP-SGKTVGFEIFEE-PKMGI 121

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T F + +  +RALEGE++RTI+ +  +  A+V+I +P    F +    P AS++++    
Sbjct: 122 TQFQENVNYLRALEGELSRTIRQLDPVRDAKVNIALPKESIFVREEDEPKASIILKLWPG 181

Query: 183 --SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAI 237
                +  +A+  LV+ AVP L   +VTV+D+ G++L+     +    +  K++ I + +
Sbjct: 182 KDLTKEQVKAVVFLVSHAVPKLKPENVTVVDNRGRVLSDILEEDTVTAVSDKNVEIKRKL 241

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           + +IE N+   L+  LG          E+     Q ++ +YDPD     S R  ++ ++ 
Sbjct: 242 ERQIEKNVQTMLSRALGEGKVVVRATVEIETGKLQQQDEIYDPDRTAVVSERKIQEKEKE 301

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
              Q         N+P V D +      ++  ++K+   NY +    + T    + ++++
Sbjct: 302 FKQQEALPPGTPTNVPPVID-ETGQGSIIKQKERKDTTKNYNVTKSLVNTQKPIFNIKKI 360

Query: 358 SIAVVVNKGRLTEVLGRSADQ----GKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           S+ V+++            ++     + +  L     +V +A G + +RGD +T+ S+ F
Sbjct: 361 SVGVLIDGKYEKVKDEEGNEKYRFIPRSEEELKVYESLVKSAIGYDPKRGDQVTVVSVPF 420

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
            E +   +   +    DI+      ++   V  V  +++                 K  E
Sbjct: 421 -EAKPEVAVAEERKIEDIILLVAIGILGLAVLAVAAIILV---------KVLKGKKKVPE 470

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
                I      + A+    M    +                         +    +L+ 
Sbjct: 471 AVPPGISPEAAAAYAIHEKEMEEFQL-----------------------EREPIYRKLVD 507

Query: 534 MIEINEERFAKILRKWARSE 553
           + + N E  A+++ KW + E
Sbjct: 508 LAQENPELIAELITKWMKEE 527


>gi|152990373|ref|YP_001356095.1| flagellar M-ring protein FliF [Nitratiruptor sp. SB155-2]
 gi|151422234|dbj|BAF69738.1| flagellar M-ring protein FliF [Nitratiruptor sp. SB155-2]
          Length = 542

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 138/563 (24%), Positives = 253/563 (44%), Gaps = 36/563 (6%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           I ++L Q F++  +  +T  L L    L+ ++  +  R       Y  LY  L   D   
Sbjct: 8   IKEKLKQAFEN-KNFIKTLFLALGIGALIVLLSALLIRDISAE-KYGVLYANLTADDAGN 65

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L E  I +++  NG  I VP   +   R+ LAA+GLP  S N G+E+FD+    G+
Sbjct: 66  ILTVLQEEKIPYKVEGNGKIILVPKDKIYDVRLKLAAKGLPR-SQNVGFEIFDE-PKMGI 123

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T F + I  +RALEGE+ARTI+ I  +  ARV+I +P    F +      ASV+I     
Sbjct: 124 THFQENINYIRALEGELARTIKKIDAVQDARVNIALPKDSIFAREEDEAKASVIISLHPG 183

Query: 183 SVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQ 238
                +  +AI  LV+ AVP L   +VTV+D++G++L+    E E   +   + + +  +
Sbjct: 184 MSLTKEQVKAIVFLVSHAVPKLKSQNVTVVDNSGRVLSDMLEENEEKEVHDVVDLKRKFR 243

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
            +IE ++   LA  LG          E+       R+ +YDPD     S R  ++  +S 
Sbjct: 244 RDIEKSVESMLARALGAQKVVVRANVEIETAKIDKRDEIYDPDKTAVVSERKIQEKSKSI 303

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
             QP  +     N+P  +    P    L++  KK+  +NY++    I T  + +K+++++
Sbjct: 304 PQQPIGSPGTPTNVP-ATINTGPNGTVLQDKSKKDITTNYDVTKSLIVTKQNVFKIKKIT 362

Query: 359 IAVVVNKGRLTEVLGRSADQ----GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           + V+++   + ++      Q     + +  L     ++ +A G + +RGD +T+ S+ F 
Sbjct: 363 VGVLIDGKYIKKMDKNGTMQVEFVPRSEQELKSFENLIKSAIGYDPKRGDQVTVVSVPFE 422

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
              L     V+  F     R+      AL+ ++  LL+ F+          +   K+  +
Sbjct: 423 NQALAAPMQVKRGF----ERYILYAAFALLAIMALLLIWFI----------LKQRKQKVL 468

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
             + + +     +    GL  +   AL    +++ + S   +             ++LH+
Sbjct: 469 LEQELATATQPGTTTPQGLTESSRKALHELEEEMSALSLQDE---------PIYQKILHI 519

Query: 535 IEINEERFAKILRKWARSEIEDR 557
            + N +  A ++ KW + E   +
Sbjct: 520 AQENPDLIATLISKWIKEEGSGK 542


>gi|332305659|ref|YP_004433510.1| flagellar M-ring protein FliF [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172988|gb|AEE22242.1| flagellar M-ring protein FliF [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 568

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 106/560 (18%), Positives = 223/560 (39%), Gaps = 27/560 (4%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +Q   F  S  S    R L+L   +++ + + +    +   P Y  L  K++  ++    
Sbjct: 26  EQKSGFMDSLGSTDMVRQLMLVVALVICVAIAVFIMIWAQEPDYRPL-AKMQTQELIEAL 84

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
               +  ID+R+   G+++ V S      ++ +A QGL S   + G ++  +   FG++ 
Sbjct: 85  DYFDQNQIDYRLE--GNTVYVSSDQYQDIKLGMARQGL-SQGVSEGTDIIMQDMGFGVSQ 141

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
            ++++    A E ++ART++ +S +  A+V + +P    F +   + +A+V+I A   ++
Sbjct: 142 RVEKVRLKHAREQQLARTLEEMSAVTRAKVLLALPKENVFARREKKASATVVITARRGAI 201

Query: 185 --YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240
              +   +I  +VA+AV  L+   VTV DS G+LL +   +       K   + +  + E
Sbjct: 202 MGSEEVSSIVDIVASAVQGLEPERVTVTDSNGRLLNSGSQDSEAARSKKEFEMERKRESE 261

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I+  L   LG+ N+ +     ++    +  +  Y+PD    RS    +D   S   
Sbjct: 262 YLQKIDSILIPVLGLGNYTAQADVTMDFTAVEQTKRSYNPDLPAVRSEMTVEDN--SVGG 319

Query: 301 QPESAVTVEQNMPHVSDR------KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
                     N P +               ++   + KEE  NYE++T    T      +
Sbjct: 320 VLGGIPGALTNQPPLDSNIPEEAIASNTQTTMPGRNHKEETRNYELDTTISHTKQQTGVI 379

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
            RLS++V ++    T   G +    +  + L +I +++    G +  RGD++ + S+ F 
Sbjct: 380 RRLSVSVALDHIATTGEDGTTTFSPRSQAELLDIRRLLQGGLGFDVTRGDSLEVVSIPFS 439

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
                    V +            VI  LV +V  L V    L  L  ++  +   K E 
Sbjct: 440 REGEVALEEVPIWEDPKFMPILKLVIGGLVIIVLLLAVVRPMLRKL--IYPEETTSKDEF 497

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
                L     + ++ +    +  +   +    +       +  + +         +  +
Sbjct: 498 DADEGLDLGDETISMLSQEFDDSQVGFAADGSFMLPDLHKDEDVLKA---------VRAL 548

Query: 535 IEINEERFAKILRKWARSEI 554
           +    E  +++++ W   + 
Sbjct: 549 VANEPELSSQVVKNWLLQDE 568


>gi|332531123|ref|ZP_08407037.1| flagellar M-ring protein FliF [Hylemonella gracilis ATCC 19624]
 gi|332039408|gb|EGI75820.1| flagellar M-ring protein FliF [Hylemonella gracilis ATCC 19624]
          Length = 570

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 110/548 (20%), Positives = 210/548 (38%), Gaps = 70/548 (12%)

Query: 45  SPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPS 104
              +  L+  L   D   I   L++  + ++ ++ G +I VP+  V   R+ LA+QGLP 
Sbjct: 44  KTDWRVLFSGLSDKDGGAIIAQLTQMQVPYQYTEGGGAILVPADKVHDTRLRLASQGLPK 103

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
            S  +G+EL +  + FG T F + +   R LEGE+ R+IQ++S + +ARVH+ +P    F
Sbjct: 104 GSV-TGFELME-NSRFGATQFQERVNFQRGLEGELTRSIQALSSVQSARVHLALPQQNGF 161

Query: 165 RKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-- 220
            +   +P+ASV++      +        I HLV+++VP +    V+++D TGKLL+ +  
Sbjct: 162 FREQQKPSASVLLTLYPGRILDRAQIAGIVHLVSSSVPEMKPEAVSIVDDTGKLLSQSPD 221

Query: 221 --EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
               +  +  + L  VQ I+ +    I   L   +G  N ++ V A+++    +     +
Sbjct: 222 GAAGQDGVDTQQLKYVQQIEAQYRQRILDILEPVVGKGNVQAQVTADVDFSQSEQTSETH 281

Query: 279 DPDSKVERSIRLSKDAQRSETSQPESAVTVE---QNMPHVSDRKV--------------- 320
            P+   +     S+    S    P     +     N P   +                  
Sbjct: 282 TPNQAPDTGAVRSQQTLESTNPGPAGPSGIPGAVSNQPPGPNSAPINAAAQALAPGVPQA 341

Query: 321 ----------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTE 370
                         +   + +KE   NYE++            ++RLS AVVVN+    +
Sbjct: 342 QAQAQGRAGQTAQAAAPVSTRKESVINYEVDKTVRVVRAARGAIKRLSAAVVVNQRTQAD 401

Query: 371 VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV--QVSF 428
             G  A        + ++  +V  + G N  RGD++ + +  F+ +   +      Q   
Sbjct: 402 ARGNVAPVPLTQQQVDQMTALVRESIGFNGDRGDSVNLMNAPFVVDAKADESLAFWQQPA 461

Query: 429 MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSA 488
           +  L+R  A  + A++  +  L         L+ +      +                  
Sbjct: 462 VQELARDLAWPVGAVLLALVVLFGV--VRPVLKAMQAPPPPQ------------------ 501

Query: 489 VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRK 548
                       LD+   +          +    + ++       +   N    A I++ 
Sbjct: 502 ------------LDALLDEDLELGLQDPIKKGPRIQERQLEEARKLARENPAAVAGIVKN 549

Query: 549 WARSEIED 556
           W  S  +D
Sbjct: 550 WIGSNKDD 557


>gi|121533763|ref|ZP_01665590.1| flagellar M-ring protein FliF [Thermosinus carboxydivorans Nor1]
 gi|121307754|gb|EAX48669.1| flagellar M-ring protein FliF [Thermosinus carboxydivorans Nor1]
          Length = 511

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 142/558 (25%), Positives = 238/558 (42%), Gaps = 61/558 (10%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +Q LQ ++S     + R LI AS   V   + + + ++     Y  LY  L++ D   + 
Sbjct: 6   EQSLQIWRSLGK--KQRYLIAASAFFVFAAILLWSYWWGGRIDYVPLYTGLDLKDAGEVV 63

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L E  +  +I  NGS+I VP+  V + R+ LA+QGLP      G+E+FD+   FG+T 
Sbjct: 64  GKLKEMKVPHQIEANGSAILVPAKDVHRVRLELASQGLPRGYK--GFEIFDQT-KFGITD 120

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP-- 182
           F Q++  ++AL+GE+ RTI+ ++ +  ARVHIV+ +   ++K     TASVM++      
Sbjct: 121 FQQKVYLLQALQGELTRTIEQMAEVEKARVHIVLAEDSLYKKNEKPATASVMLKLRPGVQ 180

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG----KSLSIVQAIQ 238
              +    I +LVA ++  L   +VTV+D+  ++L          G      L + + IQ
Sbjct: 181 LSREQVRGIVNLVAHSIQGLKPENVTVVDNYARVLNDQVDTPFTAGTIPVTQLELTKKIQ 240

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQ 295
            +++ N++  L   LG     + V  ELN D + I   +++P   D  + RS++   +  
Sbjct: 241 EDLQKNVHTLLEQVLGPGKAAARVSVELNFDQRTIDRQIFEPIVDDKGIIRSMQEMSETY 300

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
           R              N+P      V    +  N +KKE   NYEIN            ++
Sbjct: 301 RGSAPVAGGVPGTTANIPGY----VTGANNQSNYEKKEVTRNYEINETKEKVVTAPGAIK 356

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           RL++AV+V+          S D+ K +S    I K V++A G+N  RGDTI++ S+ F  
Sbjct: 357 RLTVAVLVD---------ASIDRAKQES----IAKTVASAVGLNPSRGDTISVESIPFST 403

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
                    + +F     +     I A    +  LL          RL      +K E  
Sbjct: 404 ELQERQRREEQAFEQQQRQELWLKIGAAAIGLIALLYI-------MRLFVRRQQQKEESE 456

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
             +I+ P P S  + +  +                               Q    +  + 
Sbjct: 457 VVTIVPPQPQSVPIKSKELTPQE-----------------------KERLQQRETVEKLA 493

Query: 536 EINEERFAKILRKWARSE 553
           +   E  A ++R W   E
Sbjct: 494 KSKPEEVAHLIRTWLAEE 511


>gi|114777411|ref|ZP_01452408.1| flagellar M-ring protein FliF [Mariprofundus ferrooxydans PV-1]
 gi|114552193|gb|EAU54695.1| flagellar M-ring protein FliF [Mariprofundus ferrooxydans PV-1]
          Length = 547

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 143/545 (26%), Positives = 245/545 (44%), Gaps = 49/545 (8%)

Query: 17  LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76
           L + R L+L     + +  F+    + +   Y  +Y  +E  D   +   L + +I +R+
Sbjct: 38  LVKYRRLMLFIAASLMLAGFIGLVLWSSEKPYRAVYAGMEEKDAATVVEMLQKEHIPYRL 97

Query: 77  SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136
            + G ++ VP   V + R+ LA QG+    + SGYELFDK N FGL+ F ++I   RA++
Sbjct: 98  -EGGGTVMVPEDQVYEVRMKLAGQGINPRGT-SGYELFDKSNEFGLSDFTRKINLQRAMQ 155

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHL 194
           GE+ARTI+ +  + AARVH+V+P   +F     + TASVM++          +  AI++L
Sbjct: 156 GELARTIEVMPQVSAARVHLVLPKESAFADRDRKATASVMLQLSGSQRLSKNTVLAIQNL 215

Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL--SIVQAIQHEIEMNINKALAAF 252
           VA++V  +++ DVTV+D++G LL+++E E               ++  +E  +   L   
Sbjct: 216 VASSVAEMNVADVTVVDASGTLLSSSEKETPSSEGQTLQEYQSKLEQRLEQRLTGMLEQI 275

Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNM 312
           +G       V A+++ +    +   Y+PD +V RS +   ++  S +S       +  N 
Sbjct: 276 VGEGQSVVRVSADIDREFIDQQSTRYNPDEQVLRSRKSIVESHTSSSSGAMGVPGLASNT 335

Query: 313 PH----VSDRKVPLPRSLENTDKKEEQSN-YEINTKSIATTHDNYKLERLSIAVVVNKGR 367
           P      S++    P    NT K+ E  N YEI++ S         +++LS+A +V    
Sbjct: 336 PGSNPATSNKTAAAPSQPGNTAKRNEDVNNYEISSTSEHRVVPFGNIKKLSVAAIVGGHM 395

Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVS 427
            T+  G      +  + LAEI K+V +A G +  RGD++T+ SM  ++    +S     +
Sbjct: 396 QTDAKGVQTFVPRSRAELAEIQKLVESAMGYDEDRGDSVTVQSMPLMD---ISSSADTAA 452

Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN--IDDAKKGEVGGKSILSPPPI 485
                +R F   + A  + +  L +  LG   LR L     D     +  GK     P  
Sbjct: 453 LDKAEARVF--YMKAARYGIAALALMLLGWFVLRPLAKRIQDSTPHDQTAGKPAPVTPLH 510

Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545
            S  T   + N                                 ++   IE+  ER  K+
Sbjct: 511 LSDSTYKRLANME-------------------------------QVRSSIELQPERATKV 539

Query: 546 LRKWA 550
           LR+W 
Sbjct: 540 LREWV 544


>gi|222112250|ref|YP_002554514.1| flagellar m-ring protein flif [Acidovorax ebreus TPSY]
 gi|221731694|gb|ACM34514.1| flagellar M-ring protein FliF [Acidovorax ebreus TPSY]
          Length = 564

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 133/564 (23%), Positives = 240/564 (42%), Gaps = 42/564 (7%)

Query: 12  KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71
           +   SL R   L L  V  + +   +AA F+   P Y  L+  L   D   I   LS+ N
Sbjct: 21  QRLASLDRAARLRLGVVAALLVAALLAAFFYSRQPDYRVLFSGLNDKDGGAIVAQLSQMN 80

Query: 72  IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131
           + ++ ++ G +I VP+  V   R+ LA QGLP  S  +G+EL +  N FG+T F + +  
Sbjct: 81  VPYKYTEGGGAILVPAERVHDVRLRLATQGLPKGSV-TGFELME-TNRFGVTQFQERLNF 138

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-- 189
            R LEGE+ R+IQ+++ + +ARVH+ +P    F +   +P+ASV++          A+  
Sbjct: 139 QRGLEGELTRSIQALASVQSARVHLALPQQNGFFREQQKPSASVLLSLYPGRFLDRAQLA 198

Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMNINK 247
            I HLVA++VP L    V+VLD TGKLL+   +     +  + L+ VQ I+ +    I  
Sbjct: 199 GIVHLVASSVPELAPSAVSVLDDTGKLLSQTPDMAGAGVDAQQLAYVQQIEQQYARRILD 258

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYD----PDSKVERSIRLSKDAQRSETSQPE 303
            L   +G +N ++ V AE++ +  +     +     PD+   RS ++ +         P 
Sbjct: 259 LLEPVVGKNNVKAQVTAEVDFNQTESTVEQHKPNLAPDASAVRSQQVVESGGTPGAQPPT 318

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENT-------------DKKEEQSNYEINTKSIATTHD 350
                  N P  +        +   T              K+E  +NYE++  +  T   
Sbjct: 319 GVPGAVTNQPPQASAAPINGANPAPTAAGGAPGSGAAGQAKRESITNYEVDKTTQVTRGG 378

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSA-DQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
              ++R++ AVVVN   ++E  G+ A ++      L ++  +V    G N  RGD++ + 
Sbjct: 379 AGAIKRVNAAVVVNYQPVSEGPGKPAVNKALTPEQLEQMTALVRETIGFNKERGDSVNLM 438

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
           +  FL  ++           + +      +   L + +G  L   + L  L R      A
Sbjct: 439 NAPFLVEEVPPGELPLWKQPETIE-----LAKTLGWPLGISLAAAILLLGLLRPALKARA 493

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
           +  ++  +         SA+ +  +    +   +  +++   +  L+             
Sbjct: 494 RAVQMAAQQPAGA--QLSAIASEELQRPGLPAPAQPEELQPTAEQLR-----------LE 540

Query: 530 RLLHMIEINEERFAKILRKWARSE 553
               +   N    A IL+ W   +
Sbjct: 541 EARQLARDNPVAVASILKTWVNGD 564


>gi|291288216|ref|YP_003505032.1| flagellar M-ring protein FliF [Denitrovibrio acetiphilus DSM 12809]
 gi|290885376|gb|ADD69076.1| flagellar M-ring protein FliF [Denitrovibrio acetiphilus DSM 12809]
          Length = 555

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 133/568 (23%), Positives = 255/568 (44%), Gaps = 29/568 (5%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           MA+ D   QF  +   L   + + +A+ +    +      ++ N P Y  L+  +   D 
Sbjct: 1   MALSDIASQFKDTYLKLSLLQKISVAAALAAVFISVAVIVYWANRPVYKTLFAGMTQDDA 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             +  +L E  I +++ D G+ I++P   V + R++LA + +P     +G ELFDK +SF
Sbjct: 61  ALVVDSLKEQRIPYKLEDGGAKITIPDQYVYETRLNLAKENIPRGGG-AGLELFDK-SSF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           G+T FMQ ++  RAL+GE+ARTI ++  I  ARVH+ +     F        A+V++R  
Sbjct: 119 GMTEFMQNVSYQRALQGELARTITALKEIQEARVHLTVSKDRLFIADEEASKAAVVLRLR 178

Query: 181 NPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN----ILGKSLSIV 234
           + +       +AI  LV+ AV  L   +V ++D+ G+LL+    E N    +    L   
Sbjct: 179 SGASLGRAEVQAIASLVSGAVKGLSPENVQIVDTQGRLLSEFLDEENSPLMMTQSQLEYT 238

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
           + I+ ++E  +N+ L A LG  N  + V AE++ + + + +  Y  D+ V RS +  +  
Sbjct: 239 KKIERDLERKVNEILGATLGKGNAVAKVTAEIDFNKRDVTKEEYG-DTPVLRSQQSME-- 295

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
             S T++P+    +     ++++  +      +  +K E+  N+EIN            +
Sbjct: 296 -ISSTNKPDGPQGIPGVQSNLAEPDIGTAGRNQEYNKTEDTQNFEINKTITVEQKAYGTI 354

Query: 355 ERLSIAVVVNKGRLTEVLGRS----ADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
           +R+++AVVV+  ++ +           Q + D  +  I  +V+ A G N  RGD I +T+
Sbjct: 355 DRVTVAVVVDDRKIRQQDDNGESTIVSQRRSDDEMRSIRNLVAMAVGYNEPRGDQIEVTN 414

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALV--FLVGTLLVTFLGLHALRRLHNIDD 468
           + F         T +    D L R     +  +V  +L+  L+V       +RR+    D
Sbjct: 415 ISF-------DTTSKDHEYDTLKREKTMELVGMVSKYLLAALIVLLFYFLVIRRILKRLD 467

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIA---LDSSNQDIFSHSRNLQSRINSYVSK 525
            K   V     ++   I   +   +  +D+      +   +       +    +++  SK
Sbjct: 468 -KPVTVHEDGSITYGQIDGEMGIDITLDDSYPKTLEELEREIESELEESSPMDVDTVKSK 526

Query: 526 QSDLRLLHMIEINEERFAKILRKWARSE 553
               ++      + +  A +L+   R +
Sbjct: 527 VMLKKIEEFATEDPDAMASLLKTLMRGD 554


>gi|121596094|ref|YP_987990.1| flagellar M-ring protein FliF [Acidovorax sp. JS42]
 gi|120608174|gb|ABM43914.1| flagellar M-ring protein FliF [Acidovorax sp. JS42]
          Length = 564

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 133/564 (23%), Positives = 240/564 (42%), Gaps = 42/564 (7%)

Query: 12  KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71
           +   SL R   L L  V  + +   +AA F+   P Y  L+  L   D   I   LS+ N
Sbjct: 21  QRLASLDRPARLRLGVVAALLVAALLAAFFYSRQPDYRVLFSGLNDKDGGAIVAQLSQMN 80

Query: 72  IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131
           + ++ ++ G +I VP+  V   R+ LA QGLP  S  +G+EL +  N FG+T F + +  
Sbjct: 81  VPYKYTEGGGAILVPAERVHDVRLRLATQGLPKGSV-TGFELME-TNRFGVTQFQERLNF 138

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-- 189
            R LEGE+ R+IQ+++ + +ARVH+ +P    F +   +P+ASV++          A+  
Sbjct: 139 QRGLEGELTRSIQALASVQSARVHLALPQQNGFFREQQKPSASVLLSLYPGRFLDRAQLA 198

Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMNINK 247
            I HLVA++VP L    V+VLD TGKLL+   +     +  + L+ VQ I+ +    I  
Sbjct: 199 GIVHLVASSVPELAPSAVSVLDDTGKLLSQTPDMAGAGVDAQQLAYVQQIEQQYARRILD 258

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYD----PDSKVERSIRLSKDAQRSETSQPE 303
            L   +G +N ++ V AE++ +  +     +     PD+   RS ++ +         P 
Sbjct: 259 LLEPVVGKNNVKAQVTAEVDFNQTESTVEQHKPNLAPDASAVRSQQVVESGGTPGAQPPT 318

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENT-------------DKKEEQSNYEINTKSIATTHD 350
                  N P  +        +   T              K+E  +NYE++  +  T   
Sbjct: 319 GVPGAVTNQPPQASAAPINGANPAPTAAGGAPGSGAAGQAKRESITNYEVDKTTQVTRGG 378

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSA-DQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
              ++R++ AVVVN   ++E  G+ A ++      L ++  +V    G N  RGD++ + 
Sbjct: 379 AGAIKRVNAAVVVNYQPVSEGPGKPAVNKALTPEQLEQMTALVRETIGFNKERGDSVNLM 438

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
           +  FL  ++           + +      +   L + +G  L   + L  L R      A
Sbjct: 439 NAPFLVEEVPPGELPLWKQPETIE-----LAKTLGWPLGISLAAAILLLGLLRPALKARA 493

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
           +  ++  +         SA+ +  +    +   +  +++   +  L+             
Sbjct: 494 RAVQMAAQQPAGA--QLSAIASEELQRPGLPAPAQPEELQPTAEQLR-----------LE 540

Query: 530 RLLHMIEINEERFAKILRKWARSE 553
               +   N    A IL+ W   +
Sbjct: 541 EARQLARDNPVAVASILKTWVNGD 564


>gi|114765263|ref|ZP_01444395.1| flagellar M-ring protein [Pelagibaca bermudensis HTCC2601]
 gi|114542398|gb|EAU45426.1| flagellar M-ring protein [Roseovarius sp. HTCC2601]
          Length = 535

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 149/533 (27%), Positives = 249/533 (46%), Gaps = 16/533 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92
           +         V +P Y  LY  L  ++  R+  +L +A I  R    G+++SVP   + +
Sbjct: 2   VFAMFFGLSAVTTPDYVALYRDLSPAEAGRMVESLEQAGIRSRTDMAGTAVSVPGEDMAR 61

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
           AR+ LA  GLP+  +  G+E+FD+ +  G+ +FMQ + R RA+EGE+AR+IQ+I G+ AA
Sbjct: 62  ARMLLAGAGLPNDGTP-GWEIFDEASGLGMNTFMQRVNRARAMEGELARSIQTIDGVEAA 120

Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDS 212
           RVH+V+P+   F +   RP+ASV++R       + A AIR LVA+AVP+L    VTVL +
Sbjct: 121 RVHLVLPEREPFSRERPRPSASVIVRGSRQVGMRQARAIRSLVASAVPDLAPAQVTVLSA 180

Query: 213 TGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272
           TG+ + + + E        S    I+  +   I + L+A +G  N R  V  +L  + Q 
Sbjct: 181 TGETILSEDGEAGSEASLQSARAQIEDRLGQRIAQILSARVGAGNARVQVSVDLTTERQV 240

Query: 273 IREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332
           +RE  YDPD +V RS    ++ +  +T+     V V  ++P      VP   +    +  
Sbjct: 241 VREQTYDPDQRVVRSTETREETREDQTA-AGGEVGVADDIPAALAADVPG-NNRNTANST 298

Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV 392
            E  NYEI   S  T  +   +E++S+AV+VN     +  G    + +    L  +  +V
Sbjct: 299 NEIVNYEIGGTSSETVREPGDIEKVSVAVLVNGIYNVQDGGAVDYEERSQEELQRLEALV 358

Query: 393 SAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452
            +A G +  RGD++ + S+ F++  +     V  SF   L+ +  T++  +  L     V
Sbjct: 359 QSAIGFDEARGDSVEVVSLRFMDYSMDVGEPVSRSFAQTLTENTGTILRGVFALALVAAV 418

Query: 453 TFLGLHA-LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSH 511
             LG+   L R+ +     +G       L P     A TTG     + A     + ++  
Sbjct: 419 LALGVRPALNRVFDQPAIAEGGSADLPGLPPSGNLPATTTGESATASNAQGGGERPVYQT 478

Query: 512 SRNLQ------------SRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
              L             + +   V +     +  +IE   E    ++R W   
Sbjct: 479 GTVLDPLPPGADEMVELAAVQGGVPRGLINTVSELIEREPEGAITVVRSWLAE 531


>gi|109899352|ref|YP_662607.1| flagellar MS-ring protein [Pseudoalteromonas atlantica T6c]
 gi|109701633|gb|ABG41553.1| flagellar M-ring protein FliF [Pseudoalteromonas atlantica T6c]
          Length = 568

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 100/560 (17%), Positives = 221/560 (39%), Gaps = 27/560 (4%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +Q   F  S  S    R L L   +++ + + +    +   P Y  L  K++  ++    
Sbjct: 26  EQKSGFMDSLGSTDMVRQLTLVVALVICVAIAVFIMIWAQEPDYRPL-AKMQTQELIEAL 84

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
               +  +D+R+   G+++ V +      ++ +A QGL S   + G ++  +   FG++ 
Sbjct: 85  DYFDQNQVDYRLE--GNTVYVSADQYQNIKLGMARQGL-SQGVSEGTDIIMQDMGFGVSQ 141

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
            ++++    A E ++ART++ +S +  A+V + +P    F +   + +A+V++ +   ++
Sbjct: 142 RVEKVRLKHAREQQLARTLEEMSAVTRAKVLLALPKENVFARREKKASATVVVTSRRGAI 201

Query: 185 Y--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240
              +   +I  +VA+AV  L+   VTV DS G+LL +   +       K   + +  + E
Sbjct: 202 MGNEEVSSIVDIVASAVQGLEPERVTVTDSNGRLLNSGSQDSEAARSKKEFEMERKRETE 261

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I+  L   LG+ N+ +     ++    +  +  Y+PD    RS    ++   S   
Sbjct: 262 YLQKIDSILIPVLGLGNYTAQADVTMDFTAVEQTKRSYNPDLPAVRSEMTVEEN--SVGG 319

Query: 301 QPESAVTVEQNMPHVSDR------KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
                     N P +               ++   + KEE  NYE++T    T      +
Sbjct: 320 MLGGIPGALTNQPPLDSNIPEEASASNTQTTVPGRNHKEETRNYELDTTISHTKQQTGVI 379

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
            RLS++V ++        G S    +  + L +I +++    G +  RGD++ + S+ F 
Sbjct: 380 RRLSVSVALDHVSTVGEDGTSTLVPRSQAELLDIRRLLQGGIGFDVTRGDSLEVVSIPFS 439

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
                    + +            VI  LV +V  L V    L  L  ++  +   K E 
Sbjct: 440 REGEVALEELPIWEDPKFMPILKLVIGGLVIIVLLLAVVRPMLRKL--IYPEETTSKDEF 497

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
                L     + ++ +    +  +   +    +       +  + +         +  +
Sbjct: 498 DADEGLDLGDETISMLSQEFDDSQVGFAADGSFMLPDLHKDEDVLKA---------VRAL 548

Query: 535 IEINEERFAKILRKWARSEI 554
           +    E  +++++ W   + 
Sbjct: 549 VANEPELSSQVVKNWLLQDE 568


>gi|221069298|ref|ZP_03545403.1| flagellar M-ring protein FliF [Comamonas testosteroni KF-1]
 gi|220714321|gb|EED69689.1| flagellar M-ring protein FliF [Comamonas testosteroni KF-1]
          Length = 568

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 118/572 (20%), Positives = 234/572 (40%), Gaps = 60/572 (10%)

Query: 12  KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71
           +  ++L R + L   ++  +  +  +AA  F   P Y  L+  +   D   I   L++ N
Sbjct: 26  QRWSALDRGQRLRWGALAALVAVGLVAAAVFYRQPDYKMLFSNVSDKDGGAIVAQLTQMN 85

Query: 72  IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131
           + ++ S+ G +I +P+  V   R+ LA QGLP  S  +G+EL +  + FG+T F + +  
Sbjct: 86  VPYKYSEGGGAILIPADRVHDVRLKLATQGLPKGSV-TGFELME-NSKFGITQFQERLNF 143

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAE 189
            R LEGE+ R+I +++ + +ARVH+ +P+   F +   +P+ASV++      +       
Sbjct: 144 QRGLEGELTRSILALNAVQSARVHLALPNQNGFFREQQKPSASVLLSLHPGRMLDRAQIA 203

Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQAIQHEIEMNINK 247
            I HLVA++VP ++   V+V+D TGKLL+ +       +  +     Q ++ +    I  
Sbjct: 204 GIVHLVASSVPEMEPSAVSVVDDTGKLLSQSPDGNAGGVDMQQFLYTQQVEQQYVRRILD 263

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP----DSKVERSIRLSKDAQRSETSQPE 303
            L   +G +N ++ V AEL+    +     + P    D    RS ++ +       + P 
Sbjct: 264 ILEPVVGKNNVKAQVSAELDFSQTESTSEQHRPNQSTDGGAVRSQQVMETNGDKTATPPT 323

Query: 304 SAVTVEQNMPHV-----------SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
                  N P             + +     +     +K+E  +NYE++     T     
Sbjct: 324 GVPGATSNQPPQNSTAPINGANPAPQAAGAGQGNAQGNKRESITNYEVDKTVKVTRGSTG 383

Query: 353 KLERLSIAVVVNKG-----------RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR 401
            ++RL+ AVVVN                     S  +        ++  +V    G ++ 
Sbjct: 384 TVKRLTAAVVVNAPLAAAAGTDAATAAAAAAVSSGLRPLTAQQQEQLLTLVRETVGYSAD 443

Query: 402 RGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461
           RGD++ + S  F+++    +        +I +   +  +   + L G L++  L    L+
Sbjct: 444 RGDSVNLVSAPFMDSGAAPAELPMWKDPEIQAMAKSLGVPIALALFGALVLLGLVRPLLK 503

Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521
             +     +   +  +++                 D  AL +  +D+             
Sbjct: 504 GRNTSPGGQLNAIEAEAL-----------------DRPALPAPAKDLSPTKE-------- 538

Query: 522 YVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
              ++   +  H+ + N    A I++ W   E
Sbjct: 539 ---QERLDQARHLAKQNPIAVANIVKTWINGE 567


>gi|315127319|ref|YP_004069322.1| flagellar MS-ring protein [Pseudoalteromonas sp. SM9913]
 gi|315015833|gb|ADT69171.1| flagellar MS-ring protein [Pseudoalteromonas sp. SM9913]
          Length = 571

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 96/558 (17%), Positives = 220/558 (39%), Gaps = 23/558 (4%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +Q   +F +   +   R + L   + + + + +    +   P    L  K++  ++    
Sbjct: 27  EQKSGYFSALGGVDVLRQITLIVALAICLAIAIFVIIWARQPDMRPL-GKMQTEELIETL 85

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L    ID+++  +G+ +SV  +     ++ +  +GL      SG ++  +   FG++ 
Sbjct: 86  DFLDAQKIDYQL--DGNVVSVDETEYQNIKLLMTREGL-DQGPTSGSDIIMQDMGFGVSQ 142

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
            ++        E ++ARTI+ ++ +  A+V + +P    F +   +P+A+V++       
Sbjct: 143 RLERERLKHGREQQLARTIEELNNVTRAKVLLAIPKENVFARREKKPSATVVLTLKRGRS 202

Query: 185 Y--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHE 240
              +  +++  ++A+AV  L+   VTV D  G+LL +           K   I +  + E
Sbjct: 203 LDGEEVDSVVDMIASAVQGLEPSRVTVTDQNGRLLNSGSQTSLAARSRKEYDIERKREQE 262

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I+  L   +G+ N+ + V   ++    +  +  Y+PD    RS    ++      +
Sbjct: 263 YLEKIDSILIPVVGLGNYTAQVDLSMDFSAVEETQKRYNPDLPAVRSETTFEENNIGGLA 322

Query: 301 QP-----ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
                   +   V   +P  +        +  +   KE   NYE++T           + 
Sbjct: 323 VGIPGALTNQPPVNSTIPEDAMAGGAGTATSPSRTHKEATRNYELDTTISHKRQQTGVIR 382

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           R+S++V V+        G +    +    L+ I +++    G + +RGD + + ++ F+ 
Sbjct: 383 RISVSVAVDYLPTVGENGETTMTPRSVEALSNIRRLLQGGVGFDMQRGDALEVVTVPFVR 442

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
                   + +   D   +    V+ ALV +V  L V       L+RL   D+  + E  
Sbjct: 443 EDSALDFELPLWEQDWFMKMMRLVLGALVIIVLILAV---VKPMLKRLIYPDNTLE-EYD 498

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
             S+ S   +  +    L  + + A    + D      +L    +   +      +  ++
Sbjct: 499 EDSLSSGVDLGDSTLDMLNNDFDSASVGFSSDGTLRLPDLHGDEDLLKA------VRALV 552

Query: 536 EINEERFAKILRKWARSE 553
               E  +++++ W   +
Sbjct: 553 ANEPELSSQVVKAWLTED 570


>gi|327399353|ref|YP_004340222.1| flagellar M-ring protein FliF [Hippea maritima DSM 10411]
 gi|327181982|gb|AEA34163.1| flagellar M-ring protein FliF [Hippea maritima DSM 10411]
          Length = 550

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 134/553 (24%), Positives = 247/553 (44%), Gaps = 27/553 (4%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L+Q+ +F+    ++ R + +IL S + V +   +      +   Y  L+  L   D + I
Sbjct: 7   LEQVKKFY---NTMNRQQRIILFSSVGVLVAGILFILIASSKVAYAPLFTNLNAKDASDI 63

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L++  + +++ + G+ I VP  MV   R+ L A GLP      G+E+FDK N F  T
Sbjct: 64  VTYLNQHGVKYKLINGGTVIEVPKDMVYSLRLDLVAAGLPKHGV-VGFEIFDKQN-FSTT 121

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
           +F++ I  +RALEGE+ RTI +I+ I +A+V+I +P    F +    PTAS+++    P 
Sbjct: 122 NFVENINYIRALEGELTRTIANINEIKSAKVNIAIPKPTIFTESQQPPTASIVLDLYKPL 181

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEIE 242
             +   AI+ LVA+AVP L   DVT++DS G LL+ N  +   +    L   Q I+   +
Sbjct: 182 TRQQIVAIQKLVASAVPGLSYKDVTIVDSDGNLLSVNIPDEQLLTANELKYKQFIEQRYK 241

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
             I   LA  LG D F  +V  EL++   + + ++YDP+S V        +   S T   
Sbjct: 242 SRIKSMLAPILGKDKFVVSVDVELDLSKIKKKSVIYDPNSVVVSEE---NEESTSTTPTS 298

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
                V  N+ + ++           + K +  +NY++      T     K++++S AVV
Sbjct: 299 GGVPGVISNIDNKTNAAAA--SGTAKSSKSKTITNYDVGRTETITEGPLIKIKKISAAVV 356

Query: 363 VN--KGRLTEVLGRSA---DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           V+     +    G+      +    + ++ I + V +A G +++RGD +T+T M F  + 
Sbjct: 357 VDGIYEPVKNKKGKVVSYKFKSLPQNTISTIQQAVMSAIGYDNKRGDKVTVTCMKFAMSG 416

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
               G V +   +++    +    ALV  +  L         ++ +  +   +  +  G 
Sbjct: 417 EKQMGNVSLGGGNMVVNLASYYKYALVAFLLALFYFLFLRKFIKNVMTVSSVRAKKTEGT 476

Query: 478 SILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
           +  +   ++     G       + IA     + +    +   + +          ++   
Sbjct: 477 AETTSEELTENEVKGKSIREIEEEIASKLDEEGVVDEEKIRANMMED--------KIREA 528

Query: 535 IEINEERFAKILR 547
            E N E  A +L+
Sbjct: 529 AEENPEEIANLLK 541


>gi|332526951|ref|ZP_08403040.1| flagellar M-ring protein FliF [Rubrivivax benzoatilyticus JA2]
 gi|332111390|gb|EGJ11373.1| flagellar M-ring protein FliF [Rubrivivax benzoatilyticus JA2]
          Length = 554

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 123/563 (21%), Positives = 223/563 (39%), Gaps = 44/563 (7%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
           F    T+L     ++  + +   + + +     +    Y  L+  +   D   I   L++
Sbjct: 19  FVARLTALPMKTKVMAGAGLAALLAIVVVLALSLKQDDYRVLFANVGEKDGGAIVEKLAQ 78

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
            N+ +R S+ G +I VP+S V   R+ L+A GLP   S +GYEL DK  +FG T   + I
Sbjct: 79  MNVPYRFSEGGGTIMVPASQVYDLRLKLSAAGLPK-GSITGYELLDKT-AFGQTQGQERI 136

Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE 189
              RALEGE+ RTIQ++S +  ARVH+ +P+   F +   +P+ASV++          A+
Sbjct: 137 NLQRALEGELTRTIQTLSSVETARVHLALPNQNGFFREQQKPSASVVLTLRPGHTLDRAQ 196

Query: 190 --AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNIN 246
              I HLV+++VP L    V+VLD  G LL++ +   + +  + L  V+ ++      +N
Sbjct: 197 LAGIVHLVSSSVPELSAKAVSVLDGDGSLLSSQDNASQGLDTQQLQYVREVEATYLRRVN 256

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK----VERSIRLSKDAQRSETSQP 302
             L   LG DN R+ V AE++    +     + P+        R+ R+S+  +    + P
Sbjct: 257 DLLEPVLGRDNLRATVTAEVDFSQTEQTSEEFKPNQGDNPAAVRASRVSESTRPGA-NVP 315

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLE----------NTDKKEEQSNYEINTKSIATTHDNY 352
                   N P V         +               +++ ++ YE++           
Sbjct: 316 SGVPGAVSNQPPVPASAPINGPAQALQAANGGAAGGNAQRDAETRYEVDKTVRVIRGATG 375

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
            + R++ AVVVN     +  G+          L ++  +V    G +  RGD++ + +  
Sbjct: 376 TVRRINAAVVVNHRNGVDAKGKPTSTPLSQEELDKLTALVEQGIGFSKERGDSVRVVNAP 435

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F   +   +  V +     +     +       ++  L+V F                  
Sbjct: 436 FRVEKAPEAEEVPIWQQPWVLDLLRSGATPAALVLVALIVVF--------------TLIR 481

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
                +   P PI    T   + +   AL   +Q     +     ++ +           
Sbjct: 482 PAIKAAAAKPEPI-KGETVDELVDGGAALPGPDQLPALEAPRSNDKLEAA---------R 531

Query: 533 HMIEINEERFAKILRKWARSEIE 555
            +   N    A I+R W   E  
Sbjct: 532 KLARENPAAVANIVRGWVSGEAA 554


>gi|124516311|gb|EAY57819.1| Flagellar M-ring protein FliF [Leptospirillum rubarum]
          Length = 531

 Score =  368 bits (946), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 133/566 (23%), Positives = 226/566 (39%), Gaps = 53/566 (9%)

Query: 4   LDQLLQFFKSGTS----LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           +D L Q F++       +   R + +  V +  +   +       S     L+  L   D
Sbjct: 1   MDALRQIFQNLLDRFMQMPVARRMTVLVVFVGMMAGGVFFSMMEKSGGDGVLFSNLSPGD 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I   L+   + + +S  GS I VPS  V   R+ LA +GLP     +G++LF+   S
Sbjct: 61  SMAIQGRLNRLGVPYHLSKKGSVIRVPSGQVYALRMELADEGLPRH-HGAGFDLFNH-PS 118

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
              T F+Q +  + AL+ E+ RTI+ ++ I  ARV IV+P    F +   +  ASV++R 
Sbjct: 119 LATTDFVQRVQYLEALQTELDRTIEEMTPIALARVSIVLPRRTVFLREPDQSHASVLVRL 178

Query: 180 INPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME---RNILGKSLSIV 234
                 +      I HLVA AVP L    VTV+D+ G++L           +    LS  
Sbjct: 179 KPGMTLEHPQVNGIVHLVANAVPGLSASRVTVVDTEGQILNRKRRGLVPGELTEAQLSYQ 238

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
           + ++  ++  +   L   LG D     V AELN    +     +DP+ +V +     ++ 
Sbjct: 239 REVEQSVQHQLQSMLDKVLGPDQSVVRVSAELNFRQVEKSSRTWDPNGRVLKDREQIREK 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT-----DKKEEQSNYEINTKSIATTH 349
                  P     V  NMP  + +    P   +NT      KK++ ++Y ++      T 
Sbjct: 299 STGSRILPIGVPGVLSNMPGANGKVASPPMGPKNTAETRYSKKKQIAHYHVSRTDQHVTE 358

Query: 350 DNYKLERLSIAVVVNKGRLT---EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
               L R+S++V+VN   +T   +   ++  Q +    + +  +IV  A G +S RGD +
Sbjct: 359 PVGNLRRISVSVLVNAVPVTIQSKTGPKTVMQPRDPKEIQDFTRIVQNAIGFDSARGDQV 418

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
            + S+ F      +   +  SF + L    A  +  L   +G LL+    L  LR L   
Sbjct: 419 VVLSVPFSGTAAPSPKNIDQSFQEKL----APFVPLLEIFLGGLLLVIFSLLVLRPLLKA 474

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
               K EV        PP+  A                                +   + 
Sbjct: 475 MVQWKPEVSPMQPAEGPPLGKAEV------------------------------AETVRS 504

Query: 527 SDLRLLHMIEINEERFAKILRKWARS 552
           S   +  M + +  + A ++R W + 
Sbjct: 505 SRDEVARMTQEDPGQAATVVRSWLKE 530


>gi|209963531|ref|YP_002296446.1| flagellar M-ring protein FliF [Rhodospirillum centenum SW]
 gi|209956997|gb|ACI97633.1| flagellar M-ring protein FliF [Rhodospirillum centenum SW]
          Length = 573

 Score =  368 bits (946), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 154/549 (28%), Positives = 266/549 (48%), Gaps = 5/549 (0%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +    ++  +LG+ R+++LA+     ++      F ++      LY  L+ ++  RI   
Sbjct: 24  VANLLQNLRALGQRRLMLLAAAGAGVLLAVALVAFGLSRAPMGLLYAGLDDAEAGRILTQ 83

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L    + +++S  G +I +P   + + R+ LA QGLPS+   +GYELFD+  + GLTSFM
Sbjct: 84  LQSMKVPYQVSGTGGAILLPQDQIARTRMLLAQQGLPSAGG-AGYELFDEQGALGLTSFM 142

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS-VY 185
           Q + + RALEGE+ARTIQ+++G+ +ARVH+ MPD  +F    A   ASV++R +      
Sbjct: 143 QRLNKARALEGELARTIQTLNGVKSARVHLSMPDGEAFAPGAAPAGASVVVRTVTGGLDR 202

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEM 243
             A AIRHLVAAAVP L  G VTV+D++G +L A+    + L    +  +  A +  +  
Sbjct: 203 SQALAIRHLVAAAVPRLQPGAVTVMDASGVVLAADGGATDGLALLHAEELRSATETRLAR 262

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            I + L    G  N R  V AE+++  + +RE  +DP+S+V RS +  ++ + S     +
Sbjct: 263 AIEEMLVPRFGPGNIRVRVAAEIDLGRETLREQTFDPNSRVLRSTQTVEERESSLDRDTD 322

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
              TVEQN+P  +        S   + ++EE +NYEI++       D  ++ RL++AVVV
Sbjct: 323 QPTTVEQNLPLEAADAQAPQGSRSESAREEETANYEISSILRERAQDAGEIRRLAVAVVV 382

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           N   +    G+S  Q + D  L+ I  +V  A G + RRGD + + ++ FL         
Sbjct: 383 NGSYVPGADGKSVYQPRSDEELSRIEHLVRTAIGFDDRRGDMVAVENLQFLAGPEEPVAA 442

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
                  + +     +   ++ +V  L++  +    + R   +      +      L+  
Sbjct: 443 PATEPGLVGNDMVRLLQWVVLGVVAVLVILLVLRPLVLRSKEVPAPAAAQAAAPPQLADA 502

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
               A       +D +              +L+S +   VS  +  RL  +++ + E   
Sbjct: 503 TTPVAGQLTHEGSDLVPAGEEGSQEMDDIVDLRS-VEGGVSAAALRRLAGIVDEHPEESI 561

Query: 544 KILRKWARS 552
            +LR W   
Sbjct: 562 TVLRTWIYE 570


>gi|220932525|ref|YP_002509433.1| flagellar M-ring protein FliF [Halothermothrix orenii H 168]
 gi|219993835|gb|ACL70438.1| flagellar M-ring protein FliF [Halothermothrix orenii H 168]
          Length = 519

 Score =  368 bits (946), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 137/559 (24%), Positives = 234/559 (41%), Gaps = 57/559 (10%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++Q  + + +     +  I+    V L+ ++L +A     +SP Y  L+  L   D + I
Sbjct: 9   IEQFKELWSNLNKRAKVVIISGVGVDLLTLILIIAM---GSSPDYQPLFSNLNPRDADAI 65

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L E  I +R++DNG +I VPS  V K R+ +A +GLPS     G+E+F++ N FG T
Sbjct: 66  IEKLDEQGIPYRLTDNGQTILVPSQHVYKTRLDMAGEGLPSQGV-VGFEIFNQSN-FGTT 123

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP- 182
            F +++   RAL GE++R+IQ++  I  A+V I  P    F +      ASV+++ +   
Sbjct: 124 DFERKVNFYRALGGELSRSIQAMEAIEYAKVQITAPKESLFIEEEQPAEASVLLKFVPGH 183

Query: 183 -SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM----ERNILGKSLSIVQAI 237
                  +AI +LVA++V  LD   VT++D++G LL+ N         +      I +  
Sbjct: 184 KLSPDQVKAISNLVASSVQGLDPDKVTIVDTSGNLLSRNTDKDFYNSQLTMNQFEIQRKF 243

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDA 294
              +E ++   L   LG DNF   V A LN D +Q+    Y P   D  + RS +  +++
Sbjct: 244 AESLENDLRAFLFKVLGPDNFTVQVKAWLNFDKRQVESKTYSPVVGDEGIVRSQQEHEES 303

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
              E            N+P      V    S    +  +  +NYEIN K     +    +
Sbjct: 304 YEGENPVATGVPGTTSNIPQYQS--VEEENSGGTYESSDVITNYEINEKIEKHVYSPGSV 361

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           ERLS+AV+VN     +              L +I   V AA G +  RGD +T+TSMDF 
Sbjct: 362 ERLSVAVIVNSSLERD-------------ELQKIRNAVQAAIGYDPERGDMVTVTSMDF- 407

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
                          + L +  A   ++ +    T +  + GL  L  +         + 
Sbjct: 408 --------------DETLKQQVAQAQSSALQAQKTRMYIYGGLIVLILIILSILLLSFKR 453

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
             +S       +     G         +       +     + ++ +         +  +
Sbjct: 454 SKESEEDMVGKAIDYMVGEEAE-----EEMAATELTEEEKKRQKMKTE--------IAEL 500

Query: 535 IEINEERFAKILRKWARSE 553
           +    +  A+IL+ W   +
Sbjct: 501 VNEKPDEVAQILKSWLLED 519


>gi|283853241|ref|ZP_06370492.1| flagellar M-ring protein FliF [Desulfovibrio sp. FW1012B]
 gi|283571346|gb|EFC19355.1| flagellar M-ring protein FliF [Desulfovibrio sp. FW1012B]
          Length = 546

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 122/563 (21%), Positives = 235/563 (41%), Gaps = 39/563 (6%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
            ++L+Q++ + ++  R   ++L  +     + F+   + +N      LY  +   D +R+
Sbjct: 9   FEKLIQYWSNRSAAQR---ILLGGLAGSMAIAFLVMVYLLNQAEMRVLYTNMAPEDASRV 65

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L  +   + + +NG+++ VP+  V + R+ +A +G+       G+ELFD++   G T
Sbjct: 66  VELLKASKTPYELRENGTTVLVPAEAVYEQRLKVAGEGV-MHGQGVGFELFDQL-KVGQT 123

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
            F+Q I   RAL+GE++RTI     +  ARVH+V+P    F +   + +ASV++      
Sbjct: 124 DFVQRINYSRALQGELSRTITEFPQVEKARVHLVLPQKSLFIEEQKKASASVVLTLKRGQ 183

Query: 184 VY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQAIQ 238
               K  + I +LVA +V  L    +T+ D+TG+ L     +  + G            +
Sbjct: 184 KLDAKQLQGIVNLVAMSVEGLTPEHITITDTTGQSLYQPRADGGLDGLSTTQFEFKNTFE 243

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
             +E  I + L   +G     +    +L+   + +R+ +YDP+  V RS + S+++    
Sbjct: 244 ANLENRIEQLLTPIVGPGRALAKANVDLDFSQRTVRKELYDPNVTVVRSEQKSEESTSGS 303

Query: 299 TSQPESAVTVEQNMPHVS-------DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
            +      T        +               S + + ++   +NYEIN +        
Sbjct: 304 AAVDAGGATTTPRGGGAAVPNSNFRGDGYSGTESTQKSSRQNSTTNYEINKEEQNVVTPV 363

Query: 352 YKLERLSIAVVVNKGRLT-EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
             L+R SIAV+V+      E         +    L  I ++V+ A G++  RGD I ++S
Sbjct: 364 GDLKRQSIAVIVDGTYEKVEGKNTFTFVPRKAEELERIKQVVARAAGLDPARGDEIQVSS 423

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
            +F         ++  + ++   R     +N L+  +  +LV    + AL R        
Sbjct: 424 FEFGVPDGSGEPSLMQTMLEYAQRLGKPFLNGLLLFLFLILVVRPVVLALIRPR----VT 479

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
           + E+     L       A+      ++   LD + Q   S +  LQ              
Sbjct: 480 EEEIETLERLPEGEARLALAEAEEGDEVTMLDGAKQFELSKNLALQ-------------- 525

Query: 531 LLHMIEINEERFAKILRKWARSE 553
              + E N E+   +L+ W + E
Sbjct: 526 ---LFEENMEQSMTLLKSWLKQE 545


>gi|114569237|ref|YP_755917.1| flagellar MS-ring protein [Maricaulis maris MCS10]
 gi|114339699|gb|ABI64979.1| flagellar M-ring protein FliF [Maricaulis maris MCS10]
          Length = 551

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 143/556 (25%), Positives = 245/556 (44%), Gaps = 13/556 (2%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++ L + F++  +   T I  LA  +   +M F  A    +      LY  L+ S+    
Sbjct: 1   MNALFEQFRAFGAGRLTAIFGLAVGVAAALMYFSGAMGGASQ---SLLYSGLDPSEAVAT 57

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           S  L +ANI + I + G++I V    V +AR+ +A+ G P S ++ GYE+FD+ +SFG  
Sbjct: 58  SQLLDQANIPYEIREGGTAIYVNRDQVDEARVRVASNG-PLSGASVGYEIFDRQDSFGQN 116

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
           SF+Q +   RA EGE+ARTIQS++ + +ARVH+ +P+   F +    PTA+V I      
Sbjct: 117 SFVQNLNAKRATEGELARTIQSLNYVNSARVHLNLPERRLFSRDQQSPTAAVTISTAGRL 176

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ-AIQHEIE 242
             +    IR++VA++   +    V++ D  G+ L +    ++     +   +  I+ ++ 
Sbjct: 177 NSEQVRVIRNIVASS-SGIAPTGVSIADDRGRQLASGSDGQSAGSMIMDERRGEIEAQLR 235

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
            NI   +   +G    R  V AEL+  +       YDP+  V RS    +D    +    
Sbjct: 236 QNILDIVEGVVGAGAARVQVNAELDRQSITQSSETYDPNGAVIRSRERGEDLSNDQDGAN 295

Query: 303 ESAVTVEQNMPHVSDRKVP-LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
           ++ V+  +N+P   D        S  N +   E+ NYEI++ +     +   + RLS+AV
Sbjct: 296 QNRVSASENLPDAGDGAGAEGSGSRSNRESTSERVNYEISSTTRTEIIEAGAINRLSVAV 355

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR---RGDTITITSMDFLENQL 418
            V+    T   G    + +  S +  I  +V +A G  S    R D +T++ ++F     
Sbjct: 356 AVDGVLETAEDGTVTWRERPQSEIDRIEALVRSAMGFVSEPGVRQDLLTVSQIEFARTDP 415

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
              GT   S M              V  V  LL+ FL    L +  +     +G     +
Sbjct: 416 LL-GTAAASGMSFSKSDIMRAAEIGVMFVTALLIIFLVARPLVKGASGMAMPQGLALAGA 474

Query: 479 ILSPPPISSAVTTGL--MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536
            +      +   T L   PN  +AL S+             +I+  V   S  ++ +++E
Sbjct: 475 GMDGAVAGAPAPTALPSQPNRPVALPSAGGAGGREDSIDIEKIDGQVKASSLKKVANIVE 534

Query: 537 INEERFAKILRKWARS 552
            + E    ILR W   
Sbjct: 535 SHPEESISILRTWLHE 550


>gi|220904839|ref|YP_002480151.1| flagellar M-ring protein FliF [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869138|gb|ACL49473.1| flagellar M-ring protein FliF [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 547

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 127/563 (22%), Positives = 251/563 (44%), Gaps = 26/563 (4%)

Query: 2   AILDQLLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           A + Q +  FK+    +   + +  A   +  +   +    ++  P Y  LY  L   D 
Sbjct: 3   AFIQQFINSFKAVWAKMSHLQRMAAAGGAVALLAGIIGLSIWMGRPEYRVLYSNLGPEDA 62

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           + +  AL    + +RI+DNG++I VP  +V   RI +A +G        G+E+FDKV   
Sbjct: 63  SVVVKALQSDKVAYRITDNGATIMVPQEVVYDQRIKIAGEG-GLVGQGIGFEIFDKV-KV 120

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           G T F+Q+I   RAL+GE+ARTI     + +ARVH+V+P    F +    P+ASV+++ I
Sbjct: 121 GQTDFVQKINYTRALQGELARTISEFPSVESARVHLVIPRRSLFVEERQSPSASVVLKLI 180

Query: 181 NPS---VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQ 235
            P+     K   AI +++  +V  LD G V++ D++GK+L   E +    I    +   Q
Sbjct: 181 RPNIKVDQKEINAILNMMLMSVEGLDRGHVSITDTSGKVLYQPEEDSLAGITTTQMEYRQ 240

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            +Q  +E  I + L    G     + V A+++   + IR  ++DP+    RS   S+++Q
Sbjct: 241 TVQRNLERRIEEMLQPLFGPGRVIAKVNADMDFSQKTIRRELFDPERTAVRSEYRSEESQ 300

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
           +   +    +  V     +     +    S ++  ++   +NYEIN +      +  +L 
Sbjct: 301 QGRANLEAGSPDV-----NFRGDGITGSVSDQSGTREARTTNYEINKEEQQIVSNVGELR 355

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           RL++AV+++ G   +  G      +    L ++ ++V  A G+++ RGD + ++S  F +
Sbjct: 356 RLTVAVLID-GTYVKADGAWTFMPRKSEELEQVRQLVHNAVGLDTGRGDALEVSSAPFTD 414

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTF-LGLHALRRLHNIDDAKKGEV 474
           ++            D   R    ++NAL+  +  +L+   + L  +R      +  +G  
Sbjct: 415 SEPPRDPNFADMLADYAERLGKPLLNALLAFLFLMLIVRPVVLALIRPKVEAGEMVEGLE 474

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
           G  +      +  A+       D +              + +  +     +     +  +
Sbjct: 475 GLPAAEEQLALYEALEEAARTEDEV-----------PQEDDEDDLVFKDIEALKAHIFTL 523

Query: 535 IEINEERFAKILRKWARSEIEDR 557
            + + E+   ++R W +++   +
Sbjct: 524 SDNHMEQVVTLVRGWMKNDEAVK 546


>gi|302342347|ref|YP_003806876.1| flagellar M-ring protein FliF [Desulfarculus baarsii DSM 2075]
 gi|301638960|gb|ADK84282.1| flagellar M-ring protein FliF [Desulfarculus baarsii DSM 2075]
          Length = 560

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 115/526 (21%), Positives = 217/526 (41%), Gaps = 35/526 (6%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
             ++N P Y  L+  L   D +++   L +  +D+++   G++I VP   V +AR+ LA+
Sbjct: 59  FLWLNQPDYQTLFSGLSQQDASQVVNQLKDMKLDYKLESGGTTILVPEESVYEARLTLAS 118

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
            GLP  ++  G+E+F++V   G T F+Q I   RAL+GE+ARTI S   +  ARVHIV+P
Sbjct: 119 AGLPRGTAGVGFEVFNEVQ-MGATDFVQRINYQRALQGELARTISSFGEVEDARVHIVLP 177

Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
               F +   +P+A+V++R              + HLVA +VP+L    VT++D+ G LL
Sbjct: 178 RESLFVEDEKKPSAAVVVRLARGQSLSAGQIAGVVHLVAGSVPDLTDDRVTIVDTNGNLL 237

Query: 218 TANEMER-----NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272
              +++       +    L   + ++      +   L   LG       V A+++     
Sbjct: 238 YRKDVDTADFPAALTASQLDYQKNLERGFVAKVQSMLEEVLGPGRAVVRVNADIDFTRTS 297

Query: 273 IREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332
             + ++DPD    RS   + D   +  + P  +      +    +      ++   TD +
Sbjct: 298 TTQDLFDPDQVAVRSETRASDKSINSGNMPIGSPDQRFTLAEA-NANPEEGQNQSKTDTE 356

Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS----ADQGKIDSYLAEI 388
            E +NYEI+            L+RL++AV+++               +   +    + ++
Sbjct: 357 NETTNYEISRTQKQVQKAIGGLQRLTVAVMIDGPYKDAADAEGNTTRSFAPRSAEEMQQL 416

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G +++RGD +T+ ++ F      +   V     D L +     +N ++ L+ 
Sbjct: 417 TELVRRAVGYDAQRGDQVTLANIPFQLPVGTDDMGVMTWE-DYLKQWGKPALNIILALLF 475

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
            LLV    L    R  N             + +                +    +  +  
Sbjct: 476 FLLVIRPALKMASRYVNARS---------ELAAATRRVGPGEELPGGGMDEQAAALAESA 526

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
            S    ++ +            +L + + + ER    LR W     
Sbjct: 527 MSRKIGVRDQ------------ILLVAQQDPERATAALRGWIHETE 560


>gi|303326607|ref|ZP_07357049.1| flagellar M-ring protein FliF [Desulfovibrio sp. 3_1_syn3]
 gi|302862595|gb|EFL85527.1| flagellar M-ring protein FliF [Desulfovibrio sp. 3_1_syn3]
          Length = 548

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 125/526 (23%), Positives = 233/526 (44%), Gaps = 22/526 (4%)

Query: 37  MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIH 96
           +    +V  P Y  LY  L   D + +  AL    I ++++DNG++I VP  +V   RI 
Sbjct: 39  IGLSVWVGRPEYRVLYSNLGAEDASHVVKALQTDKIPYQLADNGATIMVPKEVVYDQRIK 98

Query: 97  LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHI 156
           +A +G        G+E+FDKV   G T F+Q+I   RAL+GE++RTI     + +ARVH+
Sbjct: 99  IAGEG-GLVGQGIGFEIFDKV-KVGQTDFVQKINYTRALQGELSRTISEFPSVESARVHL 156

Query: 157 VMPDMGSFRKIGARPTASVMIRAINPSV---YKSAEAIRHLVAAAVPNLDMGDVTVLDST 213
           V+P    F +    P+ASV+++  NP+     K   AI +++  AV  LD G V++ D+ 
Sbjct: 157 VIPQRSLFVEERQSPSASVVLKLTNPNSKPDQKEISAILNMMLMAVEGLDKGHVSITDNG 216

Query: 214 GKLLTANEMER--NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ 271
           GK+L   E +         +     +Q  +E  I + L    G     + V A+++   +
Sbjct: 217 GKVLYQPEEDSLAGASSTQMEHRLQVQRNLERRIEEMLQPLFGPGRVIAKVNADMDFSQK 276

Query: 272 QIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDK 331
            IR   +DP+    RS + S+++Q+   +    A        +     +    S +N  +
Sbjct: 277 TIRREFFDPEKTAVRSEQRSEESQQGRANLEAGAPDT-----NFRGDGITGSVSDQNGTR 331

Query: 332 KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKI 391
           +   +NYEIN +      +   L RL++AV+++ G   +  G+ +   +    L  + ++
Sbjct: 332 ETRTTNYEINKEEQQIVANVGDLRRLTVAVIID-GTYEKADGKWSFVPRKAEELDRVRQL 390

Query: 392 VSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLL 451
           VS A G++  RGD + ++S  F +++            D   R    ++NAL+  +  +L
Sbjct: 391 VSNAVGLDKGRGDLLEVSSAPFTDSEPPKDPNFADLLADYAERLGKPLLNALLAFLFLML 450

Query: 452 VTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSH 511
           +    + AL R       + GE+       P           +     A +   +     
Sbjct: 451 IVRPVVLALIR----PKVEAGEMVEGLEGLPAAEEQLALYEALEEAAKADEEGPEQEEDD 506

Query: 512 SRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIEDR 557
              +   I +  +      +  + + + E+   ++R W R++   +
Sbjct: 507 GELVFKDIEALKAH-----IFTLSDNHMEQVVTLVRGWMRNDETAK 547


>gi|206603154|gb|EDZ39634.1| Flagellar M-ring protein FliF [Leptospirillum sp. Group II '5-way
           CG']
          Length = 531

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 132/566 (23%), Positives = 226/566 (39%), Gaps = 53/566 (9%)

Query: 4   LDQLLQFFKSGTS----LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           +D L Q F++       +   R + +  V +  +   +       +     L+  L   D
Sbjct: 1   MDALRQIFQNLLDRFMQMPVARRMTVLVVFVGMVAGGVFFSMMEKTGGDGVLFSNLSPGD 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I   L+   + + +S  GS I VPS  V   R+ LA +GLP     +G++LF+   S
Sbjct: 61  SMAIQGRLNRLGVPYHLSKKGSVIRVPSGQVYALRMELADEGLPRH-HGAGFDLFNH-PS 118

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
              T F+Q +  + AL+ E+ RTI+ ++ I  ARV IV+P    F +   +  ASV++R 
Sbjct: 119 LATTDFVQRVQYLEALQTELDRTIEEMTPIALARVSIVLPRRTVFLREPDQSHASVLVRL 178

Query: 180 INPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME---RNILGKSLSIV 234
                 +      I HLVA AVP L    VTV+D+ G++L           +    LS  
Sbjct: 179 KPGMTLEHPQVNGIVHLVANAVPGLSASRVTVVDTEGQILNRKRRGLVPGELTEAQLSYQ 238

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
           + ++  ++  +   L   LG D     V AELN    +     +DP+ +V +     ++ 
Sbjct: 239 REVEQSVQHQLQSMLDKVLGPDQSVVRVSAELNFRQVEKSSRTWDPNGRVLKDREQIREK 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT-----DKKEEQSNYEINTKSIATTH 349
                  P     V  NMP  + +    P   +NT      KK++ ++Y ++      T 
Sbjct: 299 STGSRILPIGVPGVLSNMPGANGKVASPPMGPKNTAETRYSKKKQIAHYHVSHTDQHVTE 358

Query: 350 DNYKLERLSIAVVVNKGRLT---EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
               L R+S++V+VN   +T   +   ++  Q +    + +  +IV  A G +S RGD +
Sbjct: 359 PVGNLRRISVSVLVNAVPVTIQSKTGPKTVMQPRDPKEIRDFTRIVQNAIGFDSARGDQV 418

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
            + S+ F      +   +  SF + L    A  +  L   +G LL+    L  LR L   
Sbjct: 419 VVLSVPFSGTSAPSPKNIDQSFQEKL----APFVPLLEIFLGGLLLVIFSLLVLRPLLKA 474

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
               K EV        PP+  A                                +   + 
Sbjct: 475 MVQWKPEVSPMQPAEGPPLGKAEV------------------------------AETVRS 504

Query: 527 SDLRLLHMIEINEERFAKILRKWARS 552
           S   +  M + +  + A ++R W + 
Sbjct: 505 SRDEVARMTQEDPGQAAIVVRSWLKE 530


>gi|319764515|ref|YP_004128452.1| flagellar m-ring protein flif [Alicycliphilus denitrificans BC]
 gi|330826731|ref|YP_004390034.1| flagellar M-ring protein FliF [Alicycliphilus denitrificans K601]
 gi|317119076|gb|ADV01565.1| flagellar M-ring protein FliF [Alicycliphilus denitrificans BC]
 gi|329312103|gb|AEB86518.1| flagellar M-ring protein FliF [Alicycliphilus denitrificans K601]
          Length = 564

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 124/536 (23%), Positives = 216/536 (40%), Gaps = 42/536 (7%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
            F+   P Y  L+  L   D   I   L++ N+ ++ ++ G +I VP+  V   R+ LA 
Sbjct: 49  FFYGRQPEYRVLFSGLNDKDGGAIVAQLAQMNVPYKYTEGGGAIMVPAERVHDVRLRLAT 108

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
           QGLP  S  +G+EL +  N FG+T F + +   R LEGE+ R+IQ+++ + +ARVH+ +P
Sbjct: 109 QGLPKGSV-TGFELME-TNRFGVTQFQERLNFQRGLEGELTRSIQALASVQSARVHLALP 166

Query: 160 DMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
           +   F +   +P+ASV++      +        I HLVA++VP L    V+VLD TGKLL
Sbjct: 167 NQNGFFREQQKPSASVLLTLYPGRILDRTQIAGIVHLVASSVPELAPSAVSVLDDTGKLL 226

Query: 218 TA---NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           +          +  + L+ VQ I+ +    I   L   +G +N ++ V AE++    +  
Sbjct: 227 SQSPDGGAGSGVDAQQLAYVQQIEQQYTRRILDLLEPVVGKNNVKAQVTAEVDFSQTEST 286

Query: 275 EIVY----DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT- 329
              +     PD+   RS ++ +         P        N P           +   T 
Sbjct: 287 SEQHRPNLSPDASAVRSQQIVESGAAPAAQPPTGVPGAVSNQPPQGSTAPINGANPPPTA 346

Query: 330 -----------DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA-D 377
                       K+E  +NYE++  +  T      ++R++ AVVVN   ++E  G+ A +
Sbjct: 347 ANAQQAGQQAGGKRESITNYEVDKTTRVTRAGAGAIKRVNAAVVVNYQSVSEAPGKPAVN 406

Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437
           +      + ++  +V    G N  RGD++ + +  FL     +         +++     
Sbjct: 407 KALSPEQIEQMTALVRETIGFNKERGDSVNLMNAPFLVEDTPSVDLPLWKQPEVVE---- 462

Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497
                L   +G  +   L +  L         K    G  ++                 +
Sbjct: 463 -----LARNLGWPVGISLAVALLLLGLVRPLLKARPRGVPAMGPQEGGGQLSAIAAEELE 517

Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             AL +  Q         Q R+              +   N    A IL+ W   E
Sbjct: 518 RPALPAPVQPQDLQPTAEQLRLEDA---------RKLARDNPVAVANILKTWVNGE 564


>gi|251772444|gb|EES53011.1| flagellar M-ring protein FliF [Leptospirillum ferrodiazotrophum]
          Length = 530

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 120/567 (21%), Positives = 211/567 (37%), Gaps = 53/567 (9%)

Query: 1   MAILDQLLQFFKSGT-SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           M +L + ++        L   + ++   +    + L +       S     LY  L  +D
Sbjct: 1   MDVLRKAMETISMWFGRLTMLQKVVAGILGAFLVGLLVFLGVVGKSADKSVLYSHLSPTD 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              IS  L    I +     G+ I VP   V   R+ LA  GLP     +G+ +F+   S
Sbjct: 61  SFEISQKLDRMGISYDTDAKGTEIRVPKKQVYMLRMQLADDGLPRH-HGAGFAIFNH-PS 118

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
              T F+Q +  ++AL+ E+ RTI+ +S I  ARV IV+P    F +      ASV++R 
Sbjct: 119 LTTTDFVQHVQYLQALQSELDRTIEEMSPIALARVSIVLPRRSVFLRHQKGAHASVLVRL 178

Query: 180 INPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME---RNILGKSLSIV 234
                      + + HLVA +V  L    VTV+D+TG +L           +    L+  
Sbjct: 179 KPGRSLSRAQVKGVVHLVANSVEGLTPDHVTVVDNTGTILNEKHPGLIPGELTKAQLAYQ 238

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
             ++H +   +   L   LG       V A L+    +    +YDP  +        ++ 
Sbjct: 239 AMVEHRLRNRVQSMLDQVLGEGQAVVRVNATLDFRRVEETRELYDPKGRALSEREKLREK 298

Query: 295 QRSETSQPESAVTVEQNMPH-----VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
                  P     V  N+P       S    P   +     KK++  +Y+++        
Sbjct: 299 SSGTRIVPVGVPGVLSNVPGSNGKVASPPLGPKDGTQTKYSKKKDIEHYDVSHTMSHIVL 358

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSAD----QGKIDSYLAEINKIVSAATGINSRRGDT 405
               + R+S++V+VN    T V G++ +    + +    LA   +IV  A G ++ RGDT
Sbjct: 359 PTGTVSRISVSVLVNGKTRT-VTGKTGETQIYEPRTPEELASFTRIVQNAIGFDATRGDT 417

Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465
           + + S+ F                  ++      +  L   +G LLV    L  L+ +  
Sbjct: 418 VVVDSVPFAAAAPEGKTQEV-----RMAERLKPFMPLLEIFLGGLLVLVFSLFILKPILQ 472

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
               K       S+  P    + +       +   + SS +D                  
Sbjct: 473 SMMTK-------SLPMPVSGPAGLPIPDREEERETVSSSKED------------------ 507

Query: 526 QSDLRLLHMIEINEERFAKILRKWARS 552
                +  M + +  + A++LR W + 
Sbjct: 508 -----IARMTQEDPSQAAQVLRLWLKE 529


>gi|77359741|ref|YP_339316.1| flagellar MS-ring protein [Pseudoalteromonas haloplanktis TAC125]
 gi|76874652|emb|CAI85873.1| flagellar biosynthesis; basal-body MS(membrane and
           supramembrane)-ring and collar protein
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 571

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 104/550 (18%), Positives = 225/550 (40%), Gaps = 25/550 (4%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
           SG  + R   LI+A  I + I +F+    +   P    L  K+   ++ +    L    I
Sbjct: 37  SGVDVLRQVTLIIALAICLAIAIFVI--IWARQPDMRPL-GKMPTEELIQTLDFLDAQKI 93

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
           D+++  +G+ +SV  S     ++ +  +GL      SG ++  +   FG++  ++     
Sbjct: 94  DYQL--DGNVVSVDESEYQNIKLLMTREGL-DQGPTSGSDIIMQDMGFGVSQRLERERLK 150

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEA 190
              E ++ARTI+ ++ I  A+V + +P    F +   +P+A+V++          +  ++
Sbjct: 151 HGREQQLARTIEELNNITRAKVLLAIPKENVFARREKKPSATVVLTLKRGRSLNSEEVDS 210

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNINKA 248
           +  ++A+AV  L+   VTV D  G+LL +           K   + +  + E    I+  
Sbjct: 211 VVDMIASAVQGLEPARVTVTDQNGRLLNSGSQSSLSARSRKEYDLERKREQEYLEKIDSI 270

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP-----E 303
           L   +G+ N+ + V   ++  + +  +  Y+PD    RS    ++      +        
Sbjct: 271 LIPIVGLSNYTAQVDLSMDFSSLEETQKRYNPDLPAVRSETTFEENNIGGLAVGIPGALS 330

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
           +   V  ++P V+ +      +  +   KE   NYE++T        +  + R+S++V V
Sbjct: 331 NQPPVNSDIPEVAGQGGAGSVTSPSRTHKEATRNYELDTTISHKRQQSGTIRRISVSVAV 390

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           +        G +    +    L+ I +++    G + +RGD + + ++ F+   +  S  
Sbjct: 391 DYLPTVGENGETTMTPRSVEALSNIRRLLQGGVGFDIQRGDALEVVTVPFVREAVDMSFE 450

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
           V +   D   +    V+ ALV +V   L+  +    L+RL   D     E    ++ S  
Sbjct: 451 VPLWEQDWFMKIVRLVLAALVIIV---LIMAVVKPMLKRLIYPDST-LDEYDEDALSSGV 506

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
            I       L  + + A    + D      +L    +   +      +  ++    E  +
Sbjct: 507 DIGDNSLDMLNKDFDSASVGFSSDGTLQLPDLHGDEDLLKA------VRALVANEPELSS 560

Query: 544 KILRKWARSE 553
           ++++ W   +
Sbjct: 561 QVVKAWLTED 570


>gi|332296504|ref|YP_004438427.1| flagellar M-ring protein FliF [Thermodesulfobium narugense DSM
           14796]
 gi|332179607|gb|AEE15296.1| flagellar M-ring protein FliF [Thermodesulfobium narugense DSM
           14796]
          Length = 515

 Score =  367 bits (941), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 145/562 (25%), Positives = 251/562 (44%), Gaps = 59/562 (10%)

Query: 4   LDQLLQFFKSGTS----LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           +D++   F S       L  TR  +L S + +  +LF+    F+  P    L+  L  SD
Sbjct: 1   MDRVRALFFSLRDRFLALSPTRRFLLLSGVSLVFILFVFGSLFLFKPQMAPLFTHLSSSD 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I   L E  I + + D+G++I VP   V + R+ LAAQGLP   S  G+E+FDK N 
Sbjct: 61  GAAIVAKLKEQKIPYELKDSGTTILVPKDKVYELRLSLAAQGLP-EGSGVGFEIFDKNNL 119

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           F  T F Q +  VRAL+GE+ARTI  I+G+  ARVHIV+P  G F       +ASVM+  
Sbjct: 120 F-TTDFTQRVDYVRALQGELARTISQINGVEGARVHIVLPKTGVFVSQDIPASASVMLNL 178

Query: 180 INPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQ 235
                   K  EAI  LV+ AV  L   +VT++D+ G+LL+A+    +  +  +   I +
Sbjct: 179 KPGQSISEKETEAIAFLVSRAVEGLKPENVTIMDTRGELLSADLNFNKSGLSQREFDIKR 238

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSK 292
             + E++  I   L   LG       V AELN+ + ++++I Y P    + +  S +++ 
Sbjct: 239 KYESEVQRKIQTMLDTMLGPGKSVVRVSAELNLASSEVKKITYSPVVGQNGIVISSKVTT 298

Query: 293 DAQRSETSQPESA-VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           D  +S+ + P++   TV Q +P     + P P S  ++ K EE +NY++N +     + +
Sbjct: 299 DTSKSQNTTPQTPSATVPQGIPSY---QTPAPTSSSSSRKTEEITNYDVNKQEEMIKNPS 355

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
             ++RL+++V+V+    T               L  +   VS A GI  +RGD++ + +M
Sbjct: 356 GDIKRLTVSVIVDGTPQT-------------VNLQALTAAVSNAAGILPQRGDSVDVQAM 402

Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471
            F      +    Q     +        I ++   V  ++   + +  LRR        +
Sbjct: 403 PF------DRTYQQKELQAMQQAQLMDTIKSIAMWVAIVIAAIIAIIFLRRTIASLKKSQ 456

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
            + G + + +       +    +  + +A   +  +                       +
Sbjct: 457 EQRGAQILDATVGAEGIIHEKPLTPEELARKKARDE-----------------------V 493

Query: 532 LHMIEINEERFAKILRKWARSE 553
             + +      A +++ W R E
Sbjct: 494 ERLAKEKPSEVANLIKTWLREE 515


>gi|225849149|ref|YP_002729313.1| flagellar M-ring protein FliF [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225643430|gb|ACN98480.1| flagellar M-ring protein FliF [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 534

 Score =  367 bits (941), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 124/565 (21%), Positives = 241/565 (42%), Gaps = 46/565 (8%)

Query: 1   MAI-LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVN--SPHYDNLYVKLEV 57
           MA+  +Q+ Q         +    I++ +I + +++ ++     +     Y  LY  L  
Sbjct: 1   MAVDFNQIKQKVGEFLKDKKNLKYIVSGLIGLFLVVILSIVLLKSFHKEDYAVLYSGLSP 60

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
            D   +  ALS+ NI +++  NG+ I VP   V  AR+ LAA+GLP S    G+E+F++ 
Sbjct: 61  DDAGNVLTALSQENIPYKLEGNGTIIMVPKDKVYDARLKLAAKGLP-SGKVVGFEIFEE- 118

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
              G T F + +  +RA+EGE+ RTI+ +  ++ A+V+I MP    F +      ASV+I
Sbjct: 119 PKLGTTQFQENVNYIRAVEGELTRTIKQLDAVMDAKVNISMPKDSLFVREDEEAKASVII 178

Query: 178 R--AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLS 232
           +         +  +AI  LV+ AVP L   +VTV+D+ G++L+      +      K++ 
Sbjct: 179 KLWPDKDLTKEQIKAIVFLVSHAVPKLKPENVTVVDNRGRVLSDLIDENVSEASGDKTVE 238

Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292
           + + ++ ++E +I   LA  +G +        EL       ++ +YDPD     S R  K
Sbjct: 239 LKRKLEKQLEKDIQSMLAKVVGPERVVVKASVELETGKVNQKDEIYDPDKVAVVSERKIK 298

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
           +++  E +   +      N+P V +  +      +  +K +  +NY+++   I T    +
Sbjct: 299 ESETEEANTINAPPGTPTNVPPVMNTPI-FGGGGKKKEKSDITTNYDVSKSMIETQKPLF 357

Query: 353 KLERLSIAVVVNKG----RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
            ++++S+ V+++      +  +   +   + +    L     ++ +A G +  RGD +T+
Sbjct: 358 VIKKVSVGVMIDGKYKEVKDKDGNVKLEFEPRSPQELQSYENLIKSAIGFDPNRGDQVTV 417

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
            S+ F   +       Q               N + +++  LL   L    +  L     
Sbjct: 418 ISVPFESLETQKQEVKQA--------------NIIQYIIAGLLGLVLLGLVVFLLLKTKK 463

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
            K+  +         P S A     +  +   L    + I                    
Sbjct: 464 KKQETIIAPLPSGEVPSSLATQLSKIYEEEKELQPEFEKI-----------------PEY 506

Query: 529 LRLLHMIEINEERFAKILRKWARSE 553
           ++LL + E N    A ++ KW + E
Sbjct: 507 IKLLEIAEENPVLIANLISKWLKEE 531


>gi|32490809|ref|NP_871063.1| hypothetical protein WGLp060 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166015|dbj|BAC24206.1| fliF [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 569

 Score =  366 bits (939), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 124/563 (22%), Positives = 234/563 (41%), Gaps = 58/563 (10%)

Query: 22  ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81
             +L S  ++ I L +    ++ S +Y  LY  +   D   I   LS  NI ++ S N  
Sbjct: 30  KYLLLSFGVIGIALSIVLITWLQSSNYQVLYTNISDQDSGDIISELSTLNIPYKFSKNNG 89

Query: 82  SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
           SI VP   + + R  LA + LP   S  G+E+ D  +SFG++ F + I   RALEGEIAR
Sbjct: 90  SIMVPEDKIYETRFLLAQKNLPKGGS-IGFEILD-NSSFGISQFNENINYQRALEGEIAR 147

Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAV 199
           TI++I+ I +ARVHI +P    F +     +AS+ +             +AIR LV+  V
Sbjct: 148 TIETINSIKSARVHIAIPKSSVFIRDNKPSSASITLGLHAGRTLDKNEIQAIRWLVSGTV 207

Query: 200 PNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIVQAIQHEIEMNINKALAAFLGVDNF 258
           PNL + ++ ++D+ GKLL   +   +      L  ++ I+ E    I + L   +G +N 
Sbjct: 208 PNLPVSNIVLVDNYGKLLAYPDNNNDDKNITQLQYIKDIELEYRRRIEEILIPIVGFNNV 267

Query: 259 RSAVVAELNMDTQQIREIVYDPDSKV----ERSIRLSKDAQRSETSQPESAVTVEQNMPH 314
           ++ V A+++    +     + P++       RS +++++   S+    E       N P 
Sbjct: 268 KAEVTAQIDFTKTEQTSEKHKPNTNPNEMSIRSQQITENNNFSQ--VAEGVPGALSNQPS 325

Query: 315 VSD------------------------RKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
                                                N  +KE+  NYEI+     +   
Sbjct: 326 QVSSANIDEENEEIDKDAESEKEIDKKNNSSSKVEKPNNVQKEKIINYEIDRTLTHSKFS 385

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
              L+RLS+AVV+NK    +    + +    +  + EI  ++    G +  R DT+ + +
Sbjct: 386 TGILKRLSVAVVINKKEDQKGNQINFE----EKEMQEITSLIKEVMGYSEERNDTLDVVN 441

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
            +F+           + F + + R     I+ + +++   L+       ++     +   
Sbjct: 442 ANFVN---KKDEIFNIPFWENI-RIQNIFISLIKYILSFALMWLFINKFIKIWKTSEQ-- 495

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
                         + + +        N ++ +   +  +   N +  I+ Y ++ S  +
Sbjct: 496 ------------NQLKNKIDKKSFQEKNNSIVNEKNNEINKKINEEENISIY-TENSIKK 542

Query: 531 LLHMIEINEERFAKILRKWARSE 553
           L  + +   +  AKI+ +W + E
Sbjct: 543 LQEIADKQPKLVAKIISQWIKKE 565


>gi|291277395|ref|YP_003517167.1| flagellar M-ring protein [Helicobacter mustelae 12198]
 gi|290964589|emb|CBG40442.1| flagellar M-ring protein [Helicobacter mustelae 12198]
          Length = 566

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 135/571 (23%), Positives = 244/571 (42%), Gaps = 32/571 (5%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVN----SPHYDNLYVKLEV 57
           A+  Q+L FF+  +   + R++++  VI           F  N    S  Y  L+  L  
Sbjct: 5   AVFSQILNFFQRFSK--KQRVIVIGGVIAAIAFFVFLIVFATNGKSRSDGYSVLFEGLTP 62

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
            D   I   L +  I ++I  N  +I +P   V + RI LA+QG+P +S   G+E+FD  
Sbjct: 63  GDNALIIQHLQQNQIPYKI-PNEETILIPRDKVYEQRIELASQGIPKNSK-VGFEIFDTK 120

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
           + FG+T     +  +RA+EGE++RTI+S++ I  A V I MP    F      PTASVM+
Sbjct: 121 D-FGMTDEEHRVKFLRAIEGELSRTIESLAPIQKANVLIAMPKSSVFVSQQTPPTASVML 179

Query: 178 RAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232
                +   SA+   I++LVAAA+PNL + +V ++   G+ L  ++     + +    L 
Sbjct: 180 GIRQGAALTSAQIFGIKNLVAAAIPNLTVENVKLVSQNGEPLGEDDEITSSKEVAAAQLK 239

Query: 233 IVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
             Q I+  +E  I   L+  + G D   + V A+ +   ++  + +YDP++ V     L 
Sbjct: 240 YKQNIERALEAKILNILSPVVGGEDKVVAKVNADFDFSQRKSLQEIYDPNNVVRSEQNLE 299

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           +  + ++  Q         N+  V  + +      E  +K +  +NYE+         + 
Sbjct: 300 EKREGAQEKQIGGVPGAVSNIGPV--QGLDSQNGREKYEKTQNTTNYEVGKTVNEIKGEF 357

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQ-----GKIDSYLAEINKIVSAATGINSRRGDTI 406
             L RLS AVVV+      +      +        ++ + +IN +V  A G N +RGD +
Sbjct: 358 GVLTRLSAAVVVDGRYKRVLNKEDGLEHMEFVPLSEAEMEKINLLVKQAIGYNQKRGDDV 417

Query: 407 TITSMDF-LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465
           T+++ +F  ++Q F        F   L  +       L +L+  L++        R++  
Sbjct: 418 TVSNFEFNAKSQTFVPEGKMDRFASKLEMYLKPFTPLLKYLIVALIIFIF----YRKIIV 473

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
               +  E           +  A       ++++   S  +        +    N    +
Sbjct: 474 PFAERMLETQNNEEEKVESLFEATDD---EDEDVNKFSEMRKRVEEQLGIGKNFNEEEVR 530

Query: 526 QSDL--RLLHMIEINEERFAKILRKWARSEI 554
              L  +  ++IE   E  A + +   + EI
Sbjct: 531 YDVLLEKTKNIIEKKPEEIAMLFKTLIKDEI 561


>gi|83955113|ref|ZP_00963769.1| flagellar FliF M-ring protein [Sulfitobacter sp. NAS-14.1]
 gi|83840442|gb|EAP79615.1| flagellar FliF M-ring protein [Sulfitobacter sp. NAS-14.1]
          Length = 564

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 143/563 (25%), Positives = 259/563 (46%), Gaps = 24/563 (4%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
              +  SLG+ ++++L    +  ++L +     V  P Y  LY  L ++  N I   L+ 
Sbjct: 4   LIDNLKSLGKNKLMMLGGAGIGVVLLMILGIGAVTRPDYAPLYSNLSITSANSIEATLAN 63

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
           A  +  +S++G+SISVP     +AR+ LA  G+P    + G+ELFD+ +   + SF+Q+I
Sbjct: 64  AGFNAMVSEDGTSISVPRGDAVRARMVLAETGMPIDG-DPGWELFDESSGLAMNSFLQKI 122

Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS--VYKS 187
            ++RA+EGE+AR+IQ++ GI +ARVH+V+PD   F +    P AS+++R  +      K 
Sbjct: 123 NKMRAMEGELARSIQTLDGISSARVHLVLPDREPFSRDAPAPRASIILRPESGRAVTRKQ 182

Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINK 247
           A A+ +LVA+AV +LD+  VTVL ++G+ + A   + +  G   S    I+  +   I  
Sbjct: 183 AVAVSNLVASAVADLDISRVTVLSASGETILAEGPDGSSQGGVQSAKAGIEDRLSQEIQN 242

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVT 307
            L A +G  N R  V  EL    + I E  YDPD +V RS     + Q    ++    V 
Sbjct: 243 ILTARVGAGNARVHVNVELTTQREVIVEQTYDPDQQVVRSTETKSEDQTG--TKEAGNVG 300

Query: 308 VEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367
           VE N+P           S   ++  +E   YEI         +   + R+S+AV+VN   
Sbjct: 301 VENNIPAALADGNGAGTSTRRSEA-DEIVQYEIGNTRREIVREAGDVRRMSVAVLVNGIY 359

Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVS 427
             +         +    LA + ++V  A G ++ RGD++++ SM F++  +     +  S
Sbjct: 360 NVDGSD-VIYAERTPEELARLGELVKTAVGFDTTRGDSVSVDSMRFMDYSMDLGDPIDKS 418

Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRR--------------LHNIDDAKKGE 473
             D L+ +  +++  ++ L+   L+   G+  + R                  + A +  
Sbjct: 419 IGDELTDNVVSIVRGVLALLVVGLILVFGVRPMLRKFSEGDQLNSYEDPALTAEKAAEPA 478

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL---QSRINSYVSKQSDLR 530
                   P    +      +  D+  L  ++ DI +        +  I   + K+    
Sbjct: 479 ALTAEGQRPKLPGTTPAVADIAEDDDPLTVTDDDIEAAEVAEYVRKEGIRGNLHKKKIET 538

Query: 531 LLHMIEINEERFAKILRKWARSE 553
           +  + +   +   +++R W  +E
Sbjct: 539 IQQLADEKPQEVLRVIRSWLPAE 561


>gi|264676594|ref|YP_003276500.1| flagellar M-ring protein FliF [Comamonas testosteroni CNB-2]
 gi|299531261|ref|ZP_07044671.1| flagellar M-ring protein FliF [Comamonas testosteroni S44]
 gi|262207106|gb|ACY31204.1| flagellar M-ring protein FliF [Comamonas testosteroni CNB-2]
 gi|298720668|gb|EFI61615.1| flagellar M-ring protein FliF [Comamonas testosteroni S44]
          Length = 568

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 118/572 (20%), Positives = 233/572 (40%), Gaps = 60/572 (10%)

Query: 12  KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71
           +   +L R + L   ++  +  +  +AA  F   P Y  L+  +   D   I   L++ N
Sbjct: 26  QRWNALDRGQRLRWGALAALVAVGLVAAAVFYRQPDYKLLFSNVSDKDGGAIVAQLTQMN 85

Query: 72  IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131
           + ++ S+ G +I +P+  V   R+ LA QGLP  S  +G+EL +  + FG+T F + +  
Sbjct: 86  VPYKYSEGGGAILIPADRVHDVRLKLATQGLPKGSV-TGFELME-NSKFGITQFQERLNF 143

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAE 189
            R LEGE+ R+I +++ + +ARVH+ +P+   F +   +P+ASV++      +       
Sbjct: 144 QRGLEGELTRSILALNAVQSARVHLALPNQNGFFREQQKPSASVLLSLHPGRMLDRAQIA 203

Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQAIQHEIEMNINK 247
            I HLVA++VP ++   V+V+D TGKLL+ +       +  +     Q ++ +    I  
Sbjct: 204 GIVHLVASSVPEMEPAAVSVVDDTGKLLSQSPDGNAGGVDMQQFLYTQQVEQQYVRRILD 263

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP----DSKVERSIRLSKDAQRSETSQPE 303
            L   +G +N ++ V AEL+    +     + P    D    RS ++ +       + P 
Sbjct: 264 ILEPVVGKNNVKAQVSAELDFSQTESTSEQHRPNQSADGGAVRSQQVMETNGEKTATPPT 323

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLE-----------NTDKKEEQSNYEINTKSIATTHDNY 352
                  N P  +        +               +K+E  +NYE++     T     
Sbjct: 324 GVPGATSNQPPQNSTAPINGANPAPQAAGAGQGNGQGNKRESITNYEVDKTVRVTRGSTG 383

Query: 353 KLERLSIAVVVNKG-----------RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR 401
            ++RL+ AVVVN               T     S  +        ++  +V    G ++ 
Sbjct: 384 TVKRLTAAVVVNAPLAAAAGTDAATAATAAAVSSGLRPLTAQQQEQLLTLVRETVGYSAD 443

Query: 402 RGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461
           RGD++ + S  F+++    +        +I +   +  +   + L G L++  L    L+
Sbjct: 444 RGDSVNLVSAPFMDSGAAPAELPMWKDPEIQAMAKSLGVPIALALFGALVLLGLVRPLLK 503

Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521
             +     +   +  +++                 D  AL +  +++             
Sbjct: 504 GRNTGPGGQLNAIEAEAL-----------------DRPALPAPAKELSPTKE-------- 538

Query: 522 YVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
              ++   +  H+ + N    A I++ W   E
Sbjct: 539 ---QERLDQARHLAKQNPIAVANIVKTWINGE 567


>gi|88813200|ref|ZP_01128440.1| flagellar M-ring protein [Nitrococcus mobilis Nb-231]
 gi|88789522|gb|EAR20649.1| flagellar M-ring protein [Nitrococcus mobilis Nb-231]
          Length = 580

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 137/563 (24%), Positives = 233/563 (41%), Gaps = 52/563 (9%)

Query: 21  RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80
           R + L   + + +   +A   +   P Y  LY  L   D + ++ AL  ANI  R+  N 
Sbjct: 42  RQMGLIIGLALAVAAGLALFMWAQEPTYRALYANLPTQDASAVADALQTANIPHRLDTNS 101

Query: 81  SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140
            +I VP+  + +AR+ LA QGLP +    G+E   +   FG + FM+     RALE E+A
Sbjct: 102 GAILVPAQRLSEARLKLAGQGLPHTGG-VGFESLRQEQGFGTSQFMETARFQRALETELA 160

Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLVAAA 198
           RTI ++  +  +RVH+ +P+   F +    P+A+V I      V  S +  AI HLVA+A
Sbjct: 161 RTIDALDPVARSRVHLAIPERSVFVRDRKTPSAAVSIGLYPGRVLSSGQVLAIAHLVASA 220

Query: 199 VPNLDMGDVTVLDSTGKLLT--ANEMER-NILGKSLSIVQAIQHEIEMNINKALAAFLGV 255
           VP +    VT++D  G+LL+  ANE E  N   + L+    ++      I   L   +G 
Sbjct: 221 VPAMTASAVTIVDQRGRLLSRVANEGEGLNATVQQLAFRHRVEEAYARRIEDLLTPIVGA 280

Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD----------AQRSETSQPESA 305
            + ++ V A ++   Q+  E +Y P+  V RS +  K+             + ++QP   
Sbjct: 281 GHVKAQVNARVDFSAQERTEELYQPEQSVVRSEQSMKERTERSQKAIGVPGALSNQPPGT 340

Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKE-------EQSNYEINTKSIATTHDNYKLERLS 358
            T++   P  S + V    +   T   E          NYEI+            + RLS
Sbjct: 341 GTLQPAQPGKSGKPVDQQEAANQTSAPELVDSRISHTRNYEISKTIHHVRTPRGAITRLS 400

Query: 359 IAVVVNKGRL---TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           +AV++++  +   T+   ++  Q      LAE+ ++V    G ++ RGDTI + S  F  
Sbjct: 401 VAVLLDRPAIAAKTKDKTQAPPQVDPQVELAELTELVKQVVGFDADRGDTINLISSPFQP 460

Query: 416 NQLFNSGTVQVSFMDILSR---HFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
            +        +     +S         +  LV ++  +     GL    R    D A + 
Sbjct: 461 PEEAPPAHTPLWQQPWVSEGGKLLLASLLGLVLILAVVRPLVHGLLGRDRSERPDSAAQA 520

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
           ++ G         + A  TG      +   S   D    +R++                 
Sbjct: 521 QIHG----GADADADAALTGPAEPKRLGTVSDYNDRLQIARDV----------------- 559

Query: 533 HMIEINEERFAKILRKWARSEIE 555
             +       A +++ W   E E
Sbjct: 560 --VGKEPAVAANVMKHWLAQENE 580


>gi|224418248|ref|ZP_03656254.1| flagellar MS-ring protein [Helicobacter canadensis MIT 98-5491]
 gi|253827573|ref|ZP_04870458.1| flagellar M-ring protein [Helicobacter canadensis MIT 98-5491]
 gi|313141781|ref|ZP_07803974.1| flagellar basal-body m-ring protein flif [Helicobacter canadensis
           MIT 98-5491]
 gi|253510979|gb|EES89638.1| flagellar M-ring protein [Helicobacter canadensis MIT 98-5491]
 gi|313130812|gb|EFR48429.1| flagellar basal-body m-ring protein flif [Helicobacter canadensis
           MIT 98-5491]
          Length = 576

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 118/572 (20%), Positives = 239/572 (41%), Gaps = 32/572 (5%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVN--------SPHYDNLYV 53
           A+ +Q+   +K    L + + +++ + I+  +        + +         P Y  L+ 
Sbjct: 5   ALFEQIRNLYKR---LNKKQKIVILATIVAIVAFISGLIVWNSMNNKAGVMYPGYAVLFE 61

Query: 54  KLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYEL 113
            +   D   I   L +  I ++I  + ++I +P  +V + R+ LA+ G+P SS   G+E+
Sbjct: 62  GVSPEDGALIIQQLQQDKIPYQIPKD-NTILIPQELVYEQRMKLASNGIPKSSK-VGFEI 119

Query: 114 FDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTA 173
           FD    FG T F Q +  +RA+EGE+ARTI+S+S I  A VHI  P+   F      PTA
Sbjct: 120 FD-TQDFGATDFDQRVKYLRAIEGELARTIESLSPIQKATVHIAQPEKSVFVSEQTPPTA 178

Query: 174 SVMI--RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILG 228
           SV++  +       K    I+++V++A+PNL + +V V++  G+ L+  +     R +  
Sbjct: 179 SVVLAFKPGQTLTPKQISGIKNIVSSAIPNLTIENVEVVNEKGEPLSELDELGGARELAA 238

Query: 229 KSLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS 287
             L      +  +E  I   LA    G +   + V AE +   ++  +  YDP++ V   
Sbjct: 239 AQLRYKNNFEQSLEEKIINILAPIAGGREGVVAKVTAEFDFAQKESTQEYYDPNNVVRSE 298

Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
             L +  + S+  +      V  N+  V   +     + E  +K +  +NYE++      
Sbjct: 299 QNLEEKREGSKPKEIGGVPGVVSNIGPVQGLED--ENNRERYEKSQTTTNYEVSKTISNI 356

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQ----GKIDSYLAEINKIVSAATGINSRRG 403
             +   + RLS AVVV+     ++     +Q       +S + +I+ +V  A G N +RG
Sbjct: 357 KGEFATIRRLSAAVVVDGKYQKQIDENGIEQLQYTALNESEMQQISALVRQAIGFNEQRG 416

Query: 404 DTITITSMDFL-ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           D +++++     ++  F + T    F++         +  L +++  +++       +  
Sbjct: 417 DEVSVSNFQLNGQDSGFKARTPLERFLETAQNLLTPFMPLLKYVIVGIILFLFYKKVILP 476

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
                   K +   +              G   N+          +   + N +  +   
Sbjct: 477 FSERMLEAKADEEEEIESLLKVDDEEEENGDKLNE--VRRRIEDQLGFGNGNNEDEVKYE 534

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
           V  +   ++  + +      A + +     E+
Sbjct: 535 VLLE---KIREVAQEKPTELANLFQTLVHDEL 563


>gi|109947514|ref|YP_664742.1| flagellar MS-ring protein [Helicobacter acinonychis str. Sheeba]
 gi|109714735|emb|CAJ99743.1| flagellar basal-body M-ring protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 567

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 123/546 (22%), Positives = 234/546 (42%), Gaps = 25/546 (4%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVN---SPHYDNLYVKLEVSD 59
           +L +++ FF       +  ++ +  +I   I+  +   F         Y  L+  L+ SD
Sbjct: 6   LLQRIVDFFIKLNKKQKIALIAMGVLITALIVFLLLYPFKEKGYVQGGYGVLFEGLDPSD 65

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I   L +  I +++S +  +I +P   V + RI LA+QG+P +S   G+E+FD  + 
Sbjct: 66  NALILQYLQQNQIPYKVSKD-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFDSKD- 122

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           FG T F Q +  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+ASVM++ 
Sbjct: 123 FGATDFDQNVKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLKL 182

Query: 180 INPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLSIV 234
                        I++L+AAAVP L + +V +++  G+ L   +     + +  + L   
Sbjct: 183 KPDMRLSPTQILGIKNLIAAAVPKLTIENVKIVNENGEPLGEGDILENSKELALEQLHYK 242

Query: 235 QAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293
           Q  ++ +E  I   LA  +G  N   + V AE +   ++  +  +DP++ V     L + 
Sbjct: 243 QNFENILESKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEK 302

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
            + +   Q      V  N+  V   K    +  E  +K +  +NYE+         +   
Sbjct: 303 KEGAPKKQVGGVPGVVSNIGPVQGLKDNKDQ--EKYEKSQNTTNYEVGKTISEIKGEFGT 360

Query: 354 LERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
           L RL+ AVVV+      L +       +   D  L +IN +V  A G N  RGD + +++
Sbjct: 361 LVRLNAAVVVDGKYKIALKDGTNALEYEPLSDEALKKINALVKQAIGYNQNRGDDVAVSN 420

Query: 411 MDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RLHN 465
            +F       ++ T     M    +   +    + +L+  +++       +     R+  
Sbjct: 421 FEFNPIIPTIDNATFGEKIMHKTQKILGSFTPLIKYLLVFVVLFIFYKKVIVPFSERMLE 480

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRINSY 522
           +   +  EV                 G +     D + L+++  +       +  +I   
Sbjct: 481 VVPDEDKEVKSMFEEMDEEEDEMNKLGDLKKKVEDQLGLNATFSEEEVRYEIILEKIRGT 540

Query: 523 VSKQSD 528
           + ++ D
Sbjct: 541 LKERPD 546


>gi|315497627|ref|YP_004086431.1| flagellar m-ring protein flif [Asticcacaulis excentricus CB 48]
 gi|315415639|gb|ADU12280.1| flagellar M-ring protein FliF [Asticcacaulis excentricus CB 48]
          Length = 561

 Score =  364 bits (934), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 153/570 (26%), Positives = 251/570 (44%), Gaps = 31/570 (5%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +D L QF       G +R+ ++  V +    +  A    +       LY  L++ + + I
Sbjct: 1   MDFLKQF-------GLSRLAVIIGVSIGVAAVLAAIALNMTGKPQALLYSNLDLKEASEI 53

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           + AL +A I ++   +GS++ V    VG+ R+ LA++GLP++ S  GYELFDK  + G T
Sbjct: 54  TAALDQAGIKYQAKGDGSTLMVDRDTVGETRLMLASKGLPTAGS-VGYELFDKAPALGQT 112

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
            F+Q +   RALEGE+ARTI ++ GI +ARVH+VMP    F++  A PTASV++   N  
Sbjct: 113 EFVQNLNNQRALEGELARTIATLKGINSARVHLVMPKRELFQEEAAAPTASVVVGLSNTE 172

Query: 184 VY-KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK-SLSIVQAIQHEI 241
           +  +   AIR+LVA AVPNL    VT++D   +LL A   + N+LG         I+  +
Sbjct: 173 LSGEQVRAIRNLVAGAVPNLKANAVTLVDDKNRLLAAGGEDDNLLGAGGAERKTEIEETL 232

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
              +   +   +G    R  V A++++++    +  YDPD +V RS R       S  + 
Sbjct: 233 RKRVKDIVEGVVGPGAARVTVTADIDLNSLTREQTQYDPDGQVVRSTRTDTSTDSSTDNA 292

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
               VT + N+P  +        +   ++   E +NYEI+            +++L++AV
Sbjct: 293 NNGTVTAQANIPGGA-AAPGQGTTGNQSETTGELTNYEISNTKTTEVIAPGAIKKLAVAV 351

Query: 362 VVNKGRLTEVLGR--SADQGKIDSYLAEINKIVSAATGINSR-------RGDTITITSMD 412
           VV+        G+       +    + +I ++V AA G   +       R D + +T++ 
Sbjct: 352 VVDGTWTPAADGKSPPTYAPRSAQDMQQIEELVRAAIGYTDQTATNPNGRKDELKVTNIR 411

Query: 413 FLENQLFNSG-TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471
           F  +     G T      D       T I  L+ LV  LLV F     L +  N + A  
Sbjct: 412 FARDAAGLGGTTASAGMFDFTKDDIVTAIQWLILLVVALLVLFFVARPLLKFVN-NGAVP 470

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSH---------SRNLQSRINSY 522
              G  ++         V         +   + +               SR   ++I   
Sbjct: 471 APGGVPALAGAGGAVQMVMGADGVPVAVPAGALDYQGVPGTGLALSPVDSRIDIAKIEGQ 530

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARS 552
           V   S  R+   +E + E    ILR W   
Sbjct: 531 VKASSVKRVSEFVERHPEESISILRSWLHD 560


>gi|319790420|ref|YP_004152053.1| flagellar M-ring protein FliF [Thermovibrio ammonificans HB-1]
 gi|317114922|gb|ADU97412.1| flagellar M-ring protein FliF [Thermovibrio ammonificans HB-1]
          Length = 532

 Score =  363 bits (932), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 126/561 (22%), Positives = 237/561 (42%), Gaps = 47/561 (8%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           + D+L  F +   +  R  +L+L ++ LV  +  +  R + N   Y  LY  L   D   
Sbjct: 6   LSDKLTAFLREKAN-PRNIVLVLGALTLVVFLSLVLVRSYSNQ-EYAVLYTHLSPDDAGE 63

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L +  I +++  +GS I VP   V + R+ LAA+GLP      G+E+FDK    G+
Sbjct: 64  ILTVLQQEKIPYKVEGDGSIILVPKDKVYEVRLQLAAKGLP-HGKVVGFEIFDK-PKLGI 121

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T F Q +  +RALEGE+ RTI+ +  + +A+V+I +P    F +    P ASV++     
Sbjct: 122 TQFQQNVEYLRALEGELERTIEQLDAVRSAKVNIALPKDSIFVRPEQEPKASVLVDLWPG 181

Query: 183 SVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQA 236
                +  +AI  LV+ AVP L   +VTV+D+ G++L+    ++     +  K L I + 
Sbjct: 182 RDLTPEQVKAIIFLVSHAVPGLKPENVTVVDTRGRVLSDLVESDNSTYAVSSKELKIKRQ 241

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           ++ +IE  +   L+  LG          E+     + ++ +YDPD     S R  ++ + 
Sbjct: 242 LERDIERKVESMLSQVLGGGKVVVRASVEVETGKVETQKEIYDPDMTAVVSQRKVQEKEV 301

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
           +   QP+ A     N+P V +        +   +KK+  +NY+++     +    ++++R
Sbjct: 302 ATQKQPQGAPGTTTNVPPVVNFGPNAK--VVQKEKKDVTTNYDVSKTIERSVTPVFRIKR 359

Query: 357 LSIAVVVNKGRLTEVLGRSADQ----GKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
           +++ V+V+         +   +     +    +    +IV +  G + +RGD +T+ S+ 
Sbjct: 360 ITVGVLVDGRYEKVKGPKGTVEYKFVPRSPQEIKTYEEIVKSVIGYDPKRGDRVTVASVP 419

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F    L  +   +                                               
Sbjct: 420 FETQLLAGNKPKEEKGFPWQYAA----------------------------GVGALVAVL 451

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
                  L   P + A   GL P + +A   S ++  +  +     IN   S    L+++
Sbjct: 452 LGLLLMKLLKKPKAEAPPAGLQPGETLA--QSLEEGLAARKEEIEEIN-LESDPIYLKIV 508

Query: 533 HMIEINEERFAKILRKWARSE 553
            + +   +  + ++ KW R E
Sbjct: 509 EVAKDYPDLISNVITKWMREE 529


>gi|95929849|ref|ZP_01312590.1| flagellar M-ring protein FliF [Desulfuromonas acetoxidans DSM 684]
 gi|95134145|gb|EAT15803.1| flagellar M-ring protein FliF [Desulfuromonas acetoxidans DSM 684]
          Length = 521

 Score =  363 bits (931), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 137/553 (24%), Positives = 235/553 (42%), Gaps = 46/553 (8%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
             F +      +R + L +V L  + LF           Y  L+  L  +D + I   L 
Sbjct: 8   NMFATIKGWPLSRKISLIAVTLFSLTLFALIIMQARHTDYQLLFANLSENDASSIVTWLK 67

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
           E  + + +   G S+ VP+  V + R+ LA  GLP      G+E+FDK  S G+T F+Q+
Sbjct: 68  EQKVPYELRSGGQSVYVPADRVYETRLDLAGAGLPQGGG-VGFEIFDK-QSLGITDFVQK 125

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-- 186
           +  +RA++GE++RT+ S+S + AARVH+ +P    F+    R TAS++++       K  
Sbjct: 126 VNYLRAMQGELSRTVASLSPVSAARVHLALPQKRLFKSEQQRVTASIIVKLAPGRTLKEA 185

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME---RNILGKSLSIVQAIQHEIEM 243
             + I +LVA +V  LD   VTV+D+ GK+L+    E     +    L   +A++ ++E 
Sbjct: 186 QVQGIVNLVAGSVEGLDSDYVTVVDAAGKVLSKKPDEGLSGPMTPGMLEYQRAVERQMES 245

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
                L   LG+ N    V A L+    +  E +YDP S V RS +L +  + S T    
Sbjct: 246 RAQAMLDRALGMANSLVKVTAVLDFAQVEKLEELYDPKSAVPRSEQLQEQKEGSST-VGG 304

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
               V+ N+    +       +        E +NYEI+     T      ++ LS++V+V
Sbjct: 305 GVPGVQANLGPGVNSAGGGGSNST---SSAETTNYEISKVVNRTVAPVGTIKHLSVSVLV 361

Query: 364 -NKGRLTEVLG-RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
            +K    E  G   A   + +  L  I K+V +A GI+  RGD + + SM F +      
Sbjct: 362 ADKMTDGEEDGAEPALTPRSEQELRTIEKMVQSALGIDKTRGDQLNVVSMPFADEFYEQP 421

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
              + S  D L  +   +   L  L   ++   L   AL+ L +    +  +        
Sbjct: 422 QLPEPSVTDQLYVYMPLLKYVLAGLGALVMYLMLVRPALKTLKSEATVQHFK-------- 473

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
                   T   +  +  A  S+  ++ +  +  Q+ + +  S                 
Sbjct: 474 --------TVKELEEEMAAGRSATVELDATEQMRQNILKAEHSPS--------------- 510

Query: 542 FAKILRKWARSEI 554
             +++R W   E 
Sbjct: 511 --QVIRTWMTDEE 521


>gi|260429390|ref|ZP_05783367.1| flagellar M-ring protein FliF [Citreicella sp. SE45]
 gi|260420013|gb|EEX13266.1| flagellar M-ring protein FliF [Citreicella sp. SE45]
          Length = 541

 Score =  363 bits (931), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 140/559 (25%), Positives = 243/559 (43%), Gaps = 27/559 (4%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           + QL Q ++    LG  R +I+ +  +  I+  +       +P    LY  LE      +
Sbjct: 1   MQQLAQIWEG---LGARRRIIVLAATVGVILAVLTMARMAGTPSMALLYAGLENGAAGEV 57

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
             AL +  + + +   G +I VP       R+ LA++GLP++S N GYEL D ++ FG T
Sbjct: 58  VEALEQRGVVYEVR--GGAIFVPEMERDALRMTLASEGLPANS-NKGYELLDGLSGFGTT 114

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP- 182
           S M +    RA EGE+ARTI +   + +ARVHI       F++   +P+AS+ + +    
Sbjct: 115 SQMFDAAYWRAKEGELARTIVASPYVASARVHIANSSANPFQRD-VQPSASISVTSTGEV 173

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242
                A A+++LVA+AVP L    V V+D  G L+ A +   +  G +      +   + 
Sbjct: 174 LSPAQARALKYLVASAVPGLVPEQVAVIDGKGGLIGAEDEVGS--GPTAEDKADL---LR 228

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
             + + + A +G+ N    V  +   +++ IR+  +DP+++V  S    + +  S+ +  
Sbjct: 229 DRVQRLVDARVGLGNAVVEVSVDTVTESETIRQRQFDPENRVVISTDTEEQSSTSQDT-G 287

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
              VTV  N+P           S  N  +  E+ NYE++      T     ++RL++AV+
Sbjct: 288 SGNVTVASNLPDGQAGGGDSSSSQSNETR--ERVNYEVSETMREVTRVPGAIKRLTVAVL 345

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           VN    T   G        D+ L  +  +V++A G   +RGD ITI S+ F   +   +G
Sbjct: 346 VNGTYDTAADGTQLFVPLPDNELTALRDLVASAVGFEEQRGDEITIRSLPFERPEGLGTG 405

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482
            ++  +  +       +       V  L+   LGL  +R +     A+    G +     
Sbjct: 406 PIEPDWFALQLDPMMLIQ----MAVLALVALILGLFVVRPILT-GSARAALPGAEGGALA 460

Query: 483 PPISSAVTTGLMPNDNIA------LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536
            P    V  G + + +        L S                +S V++    RL  +IE
Sbjct: 461 LPSGGTVLDGEIDDGDEGFAPLADLGSGEGFGGGFGGMGMVDFDSPVAEDPVDRLRGLIE 520

Query: 537 INEERFAKILRKWARSEIE 555
             +    +ILR W   + E
Sbjct: 521 QRKSETVEILRSWLDEKEE 539


>gi|213425006|ref|ZP_03357756.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
          Length = 429

 Score =  363 bits (931), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 105/386 (27%), Positives = 175/386 (45%), Gaps = 33/386 (8%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 44  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 103

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 104 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 161

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +              A+ HLV++AV  L  G+VT++D +G LLT
Sbjct: 162 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 221

Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  E  
Sbjct: 222 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 281

Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------------HVSDRKV 320
           Y P+    ++   S+    SE      P        N P                + +  
Sbjct: 282 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 341

Query: 321 PLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373
           P   +  N++        + E SNYE++     T  +   +ERLS+AVVVN   L +   
Sbjct: 342 PQTSTSTNSNNAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP 401

Query: 374 RSADQGKIDSYLAEINKIVSAATGIN 399
                      + +I  +   A G +
Sbjct: 402 L----PLTADQMKQIEDLTREAMGFS 423


>gi|208434294|ref|YP_002265960.1| flagellar basal-body M-ring protein [Helicobacter pylori G27]
 gi|208432223|gb|ACI27094.1| flagellar basal-body M-ring protein [Helicobacter pylori G27]
          Length = 567

 Score =  362 bits (930), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 123/548 (22%), Positives = 239/548 (43%), Gaps = 29/548 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEV 57
           +L +++ FF       + +I ++A+ +L+  +L     +      Y       L+  L+ 
Sbjct: 6   LLQRIVDFFIKLNK--KQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEGLDP 63

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
           SD   I   L +  I +++S +  +I +P   V + RI LA+QG+P +S   G+E+FD  
Sbjct: 64  SDNALILQHLQQNQIPYKVSRD-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFDTK 121

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
           + FG T F Q I  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+ASVM+
Sbjct: 122 D-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180

Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232
           +              I++L+AAAVP L + +V +++  G+ +   +     + +  + L 
Sbjct: 181 KLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLH 240

Query: 233 IVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
             Q  ++ +E  I   LA  +G  N   + V AE +   ++  +  +DP++ V     L 
Sbjct: 241 YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE 300

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+         + 
Sbjct: 301 EKKEGTSKKQVGGVPGVVSNIGPVQGLKD--NKEPEKYEKSQNTTNYEVGKTISEIKGEF 358

Query: 352 YKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
             L RL+ AVVV+      L +       +   D  L +IN +V  A G N  RGD + +
Sbjct: 359 GTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLQKINALVKQAIGYNQNRGDDVAV 418

Query: 409 TSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463
           ++ +F     + ++ T+    M    +   +    + +++  +++       +     R+
Sbjct: 419 SNFEFNPMAPMIDNATLSEKIMHKTQKILGSFTPLIKYVLVFIVLFIFYKKVIVPFSERM 478

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRIN 520
             +   +  EV                 G +     D + L+++  +       +  +I 
Sbjct: 479 LEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIILEKIR 538

Query: 521 SYVSKQSD 528
             + ++ D
Sbjct: 539 GTLKERPD 546


>gi|212634367|ref|YP_002310892.1| flagellar MS-ring protein [Shewanella piezotolerans WP3]
 gi|212555851|gb|ACJ28305.1| Flagellar FliF M-ring protein [Shewanella piezotolerans WP3]
          Length = 531

 Score =  362 bits (930), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 108/530 (20%), Positives = 216/530 (40%), Gaps = 32/530 (6%)

Query: 37  MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIH 96
           +    +   P Y  L  ++   ++ ++   L +  I ++I   G  + VP       ++ 
Sbjct: 19  VFVMIWAQEPEYRPL-GQMSTQEMVQVLDELDKNKIKYQIQ--GDVVKVPEDKYQDVKMM 75

Query: 97  LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHI 156
           L+  GL  +++N  Y    K + FG++  M++     + E  +AR I+ +  +  A+V +
Sbjct: 76  LSRAGLDQAAANDDY--LSKDSGFGVSQRMEQARLKHSQEQNLARAIEELKSVSRAKVIL 133

Query: 157 VMPDMGSFRKIGARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
            +P    F +  ++P+A+V++      +  +  ++I  +VA+AV NL+   VTV DS G+
Sbjct: 134 ALPKENVFARNRSKPSATVVVNTRRGGLGQEEVDSIVDIVASAVHNLEPNKVTVTDSNGR 193

Query: 216 LLTANEME--RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI 273
           LL +   +    I  + L IVQ  + E    +   L   LG +NF S V   ++    + 
Sbjct: 194 LLNSGSQDGVSAIARRELEIVQQKESEYRNKVESILMPILGPENFTSQVDVSMDFTAVEQ 253

Query: 274 REIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDR-----KVPLPRSLEN 328
               Y+PD    RS  + ++     T+          N P ++                 
Sbjct: 254 TAKRYNPDLPALRSEMVVENNSNGGTT--GGIPGALSNQPPMNSDIPQEVGTETTSVSSG 311

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAE 387
           +  KE   N+E++T    T      L R+S++V V+         G  +   + +  LA 
Sbjct: 312 SSHKEATRNFELDTTISHTRQQIGTLRRVSVSVAVDFKNAPAAEDGSVSRVPRTEQELAN 371

Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447
           I +++  A G N++RGD I + ++ F++  + ++   ++       R     +  LV L 
Sbjct: 372 IRRLLEGAVGFNTQRGDMIEVVTVPFMDQLIEDAPAPEMWEQPWFWRAVKLGLGTLVALA 431

Query: 448 GTLLVTFLGLHALRRLHNIDDAKKGEVG--GKSILSPPPISSAVTTGLM--PNDNIALDS 503
              +V F+    L+R+   D AK  E    G  +       +A T G++  P    +   
Sbjct: 432 ---IVMFIISPMLKRIVYPDSAKLPEEPKMGDELAEIEDQYAADTLGMLERPEAEYSYAD 488

Query: 504 SNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
               +          I +         +  ++    E   ++++ W   +
Sbjct: 489 DGSILIPDLHKDDDMIKA---------IRAIVANEPELSTQVVKNWLIED 529


>gi|260779317|ref|ZP_05888209.1| flagellar M-ring protein FliF [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605481|gb|EEX31776.1| flagellar M-ring protein FliF [Vibrio coralliilyticus ATCC BAA-450]
          Length = 556

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 122/564 (21%), Positives = 235/564 (41%), Gaps = 31/564 (5%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
            +L Q + +       R L+L++V+   +   +    + ++  Y  LY + E  D   I 
Sbjct: 6   HKLKQLWSNS-----QRNLVLSAVLAAIVAAIIVVALWSSTQSYRPLYSQQERFDTGEIV 60

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L    I++R+ +    + VP   V + R+ LAA+G+  +   +G +   + +S G + 
Sbjct: 61  SVLESEGINYRLQEQNGQVLVPEGEVARIRMLLAAKGV-KAKLPTGLDSLKEDSSLGTSQ 119

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAINPS 183
           FM+       LEGE+ RTI S++ +  ARVH+ +P    F +  +  P+ASVM+      
Sbjct: 120 FMETARYRHGLEGELIRTIISLNAVSNARVHLAIPRQTLFVRQNSEAPSASVMLELKPGE 179

Query: 184 VYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIVQAIQ 238
             K    EAI +L+  +V  +    V+V+D  G+LL+A+           K L   + ++
Sbjct: 180 DLKPEQVEAIINLIVGSVTGMKPEQVSVIDQYGRLLSADVASAEAGKVNAKYLEYQKNVE 239

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
            +I    +  L   +G  NFR  V A+L+    +  + + D ++ + R+     +    +
Sbjct: 240 KQIIQRASDMLTPIVGPSNFRVQVAADLDFSQVEETQEILD-NTPIVRNEHTISNNSIDQ 298

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
            +          N P V+  +VP   S     + E    Y + +    T +   ++E+LS
Sbjct: 299 IAL--GVPGTLSNQPPVT-GEVPTQDSQNTNARSEVNRQYAVGSSVRRTHYQQGQIEKLS 355

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           ++V++N+         +AD+       A+I+ +V+ A GI + RGD++++ S  F    +
Sbjct: 356 VSVLLNEAAAPNGTAWTADEK------AQISTMVTDAVGIAADRGDSLSLMSFSFTPLAI 409

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
               T+       + +    VI  ++     + + F  L  L       D +  E+    
Sbjct: 410 EAPPTIPWWQDPTIQQPMRYVIGGML----GMAMIFFVLRPLIMHLTGADMRSQELEFAE 465

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL----LHM 534
               P   +  T      +       ++   + S  L    +      S L +    L +
Sbjct: 466 PQEEPIFDNLQTREEREREEALNRKLSEKGIAASSGLDVGNDMLPPAGSPLEIQLKHLQL 525

Query: 535 IE-INEERFAKILRKWARSEIEDR 557
           I     ER A++L++W       R
Sbjct: 526 IANEEPERVAEVLKQWVNVNEHSR 549


>gi|15644979|ref|NP_207149.1| flagellar MS-ring protein [Helicobacter pylori 26695]
 gi|2313452|gb|AAD07419.1| flagellar basal-body M-ring protein (fliF) [Helicobacter pylori
           26695]
          Length = 567

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 124/548 (22%), Positives = 240/548 (43%), Gaps = 29/548 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEV 57
           +L +++ FF       + +I ++A+ +L+  +L     +      Y       L+  L+ 
Sbjct: 6   LLQRIVDFFIKLNK--KQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEGLDS 63

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
           SD   I   L +  I +++S +  +I +P   V + RI LA+QG+P +S   G+E+FD  
Sbjct: 64  SDNALILQHLQQNQIPYKVSKD-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFDTK 121

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
           + FG T F Q I  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+ASVM+
Sbjct: 122 D-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180

Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232
           +              I++L+AAAVP L + +V +++  G+ +   +     + +  + L 
Sbjct: 181 KLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLH 240

Query: 233 IVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
             Q  ++ +E  I   LA  +G  N   + V AE +   ++  +  +DP++ V     L 
Sbjct: 241 YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE 300

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+         + 
Sbjct: 301 EKKEGASKKQVGGVPGVVSNIGPVQGLKD--NKEPEKYEKSQNTTNYEVGKTISEIKGEF 358

Query: 352 YKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
             L RL+ AVVV+      L + +     +   D  L +IN +V  A G N  RGD + +
Sbjct: 359 GTLVRLNAAVVVDGKYKIALKDGVNTLEYEPLSDESLQKINALVKQAIGYNQNRGDDVAV 418

Query: 409 TSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463
           ++ +F     + ++ T+    M    +   +    + +++  +++       +     R+
Sbjct: 419 SNFEFNPMAPVIDNATLSEKIMHKTQKILGSFTPLIKYILVFIVLFIFYKKVIVPFSERM 478

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRIN 520
             +   +  EV                 G +     D + L++S  +       +  +I 
Sbjct: 479 LEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNASFSEEEVRYEIILEKIR 538

Query: 521 SYVSKQSD 528
             + ++ D
Sbjct: 539 GTLKERPD 546


>gi|163781742|ref|ZP_02176742.1| Flagellar M-ring protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882962|gb|EDP76466.1| Flagellar M-ring protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 502

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 150/558 (26%), Positives = 251/558 (44%), Gaps = 61/558 (10%)

Query: 1   MAILDQ-LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           MA L+  L    +  +++  ++  ++  +  V   L +    +   P Y  LY  L   D
Sbjct: 1   MADLNSTLKNIQERFSAMPLSQKALVVGLPAVIFSLLVTVLIYSLQPDYAVLYSNLSPED 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
           +N +   L +  + +++  +G +I VP + V   R+ LAA+G+P+     GYELFDK ++
Sbjct: 61  MNAVLTELDKEGVKYKVGRDGRTILVPENKVRDVRLKLAAKGIPNKGV-IGYELFDK-ST 118

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
            GL+ F Q +   RA+EGE+ RTI     I  ARVHI +P+   F +    P+ASV IR 
Sbjct: 119 IGLSEFQQRVNFKRAIEGELVRTILRFKNIEDARVHIALPEKSIFLRDEKEPSASVFIRL 178

Query: 180 INPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQ 235
              +    +  +AIR+LVAA++ NL   +V V+D  G+ LTA  +E +  I  K L I +
Sbjct: 179 RPGAEITEEQVKAIRNLVAASIENLKPENVVVIDDKGRNLTANLDEGKEEISNKQLKIRR 238

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
             + EIE  +  AL   LG  N +  V  EL+    Q RE  YDPD     S +  K+  
Sbjct: 239 EFEREIERKVQTALEEALGYGNVKVRVSVELDFTKVQRREETYDPDMTAVVSEQKRKE-- 296

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
           ++  +          N+P  +        +L  T+KKE  +NYE++ K + +  +  K++
Sbjct: 297 KTTGAPVGGVPGAAANIPPGTGAVQGQGGTL--TEKKETITNYEVSKKEVISVDNTLKIK 354

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           RLS+ V++NK                D     I KIVSAA G++ +RGDT+++ ++ F +
Sbjct: 355 RLSVGVIINK-------------ELKDVNEESIKKIVSAAVGLDPKRGDTLSVVAVPFKK 401

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
             +       +            +I  +V  V  LL+ F  L  LR+             
Sbjct: 402 PAIAEEMGPPIPTWKKF------LIPGVVGAVMALLLVFGLLRFLRKKE----------- 444

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
                     + A     +  + +A  S  + +   +R L+              +  + 
Sbjct: 445 ----------APAPVAVEVSAEEVATISGAEALRETARELE----------IVKTITEVA 484

Query: 536 EINEERFAKILRKWARSE 553
               ++ A +L+ W R E
Sbjct: 485 RKEPKKVAAMLKLWLREE 502


>gi|108562771|ref|YP_627087.1| flagellar MS-ring protein [Helicobacter pylori HPAG1]
 gi|107836544|gb|ABF84413.1| flagellar basal-body M-ring protein [Helicobacter pylori HPAG1]
          Length = 567

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 123/548 (22%), Positives = 239/548 (43%), Gaps = 29/548 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEV 57
           +L +++ FF       + +I ++A+ +L+  +L     +      Y       L+  L+ 
Sbjct: 6   LLQRIVDFFIKLNK--KQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEGLDS 63

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
           SD   I   L +  I +++S +  +I +P   V + RI LA+QG+P +S   G+E+FD  
Sbjct: 64  SDNALILQHLQQNQIPYKVSKD-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFDTK 121

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
           + FG T F Q I  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+ASVM+
Sbjct: 122 D-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180

Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232
           +              I++L+AAAVP L + +V +++  G+ +   +     + +  + L 
Sbjct: 181 KLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLH 240

Query: 233 IVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
             Q  ++ +E  I   LA  +G  N   + V AE +   ++  +  +DP++ V     L 
Sbjct: 241 YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE 300

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+         + 
Sbjct: 301 EKKEGAPKKQVGGVPGVVSNIGPVQGLKD--NKEPEKYEKSQNTTNYEVGKTISEIKGEF 358

Query: 352 YKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
             L RL+ AVVV+      L +       +   D  L +IN +V  A G N  RGD + +
Sbjct: 359 GTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLQKINALVKQAIGYNQNRGDDVAV 418

Query: 409 TSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463
           ++ +F     + ++ T+    M    +   +    + +++  +++       +     R+
Sbjct: 419 SNFEFNPMAPMLDNATLSEKIMHKTQKILGSFTPLIKYVLVFIVLFIFYKKVIVPFSERM 478

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRIN 520
             +   +  EV                 G +     D + L+++  +       +  +I 
Sbjct: 479 LEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIILEKIR 538

Query: 521 SYVSKQSD 528
             + ++ D
Sbjct: 539 GTLKERPD 546


>gi|298736711|ref|YP_003729241.1| flagellar M-ring protein FliF [Helicobacter pylori B8]
 gi|298355905|emb|CBI66777.1| flagellar M-ring protein FliF [Helicobacter pylori B8]
          Length = 567

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 123/548 (22%), Positives = 239/548 (43%), Gaps = 29/548 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEV 57
           +L +++ FF       + +I ++A+ +L+  +L     +      Y       L+  L+ 
Sbjct: 6   LLQRIVDFFIKLNK--KQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEGLDS 63

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
           SD   I   L +  I +++S +  +I +P   V + RI LA+QG+P +S   G+E+FD  
Sbjct: 64  SDNALILQHLQQNQIPYKVSKD-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFDTK 121

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
           + FG T F Q I  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+ASVM+
Sbjct: 122 D-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180

Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232
           +              I++L+AAAVP L + +V +++  G+ +   +     + +  + L 
Sbjct: 181 KLKPDMKLSPTQILGIKNLIAAAVPKLTIDNVKIVNENGESIGEGDIPENSKELALEQLH 240

Query: 233 IVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
             Q  ++ +E  I   LA  +G  N   + V AE +   ++  +  +DP++ V     L 
Sbjct: 241 YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE 300

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+         + 
Sbjct: 301 EKKEGTPKKQVGGVPGVVSNIGPVQGLKD--NKEPEKYEKSQNTTNYEVGKTISEIKGEF 358

Query: 352 YKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
             L RL+ AVVV+      L +       +   D  L +IN +V  A G N  RGD + +
Sbjct: 359 GTLVRLNAAVVVDGKYKIALKDGTNTLEYEPLSDESLQKINALVKQAIGYNQNRGDDVAV 418

Query: 409 TSMDFLEN-QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463
           ++ +F     + ++ T+    M    +   +    + +++  +++       +     R+
Sbjct: 419 SNFEFNPIMPMLDNATLSEKIMHKTQKILGSFTPLIKYVLVFIVLFIFYKKVIVPFSERM 478

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRIN 520
             +   +  EV                 G +     D + L+++  +       +  +I 
Sbjct: 479 LEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIILEKIR 538

Query: 521 SYVSKQSD 528
             + ++ D
Sbjct: 539 GTLKERPD 546


>gi|242310458|ref|ZP_04809613.1| flagellar basal-body m-ring protein flif [Helicobacter pullorum MIT
           98-5489]
 gi|239522856|gb|EEQ62722.1| flagellar basal-body m-ring protein flif [Helicobacter pullorum MIT
           98-5489]
          Length = 575

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 113/491 (23%), Positives = 217/491 (44%), Gaps = 27/491 (5%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVN--------SPHYDNLYV 53
           A+ +Q+   +K    L + + +++ + I+  +    A   + +         P Y  L+ 
Sbjct: 5   ALFEQIRNLYKR---LNKKQKIVILATIVAIVGFISALIVWNSINNKAGVLYPGYAVLFE 61

Query: 54  KLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYEL 113
            +   D   I   L +  I ++I  + ++I +P  +V + R+ LA+ G+P SS   G+E+
Sbjct: 62  GVSPEDGALIIQQLQQDKIPYKIPKD-NTILIPQELVYEERMKLASNGIPKSSK-VGFEI 119

Query: 114 FDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTA 173
           FD    FG T F Q I  +RA+EGE+ARTI+S+S I  A VHI  P+   F      PTA
Sbjct: 120 FD-TQDFGATDFDQRIKYLRAIEGELARTIESLSPIQKATVHIAQPEKSVFVSEQTPPTA 178

Query: 174 SVMI--RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILG 228
           SV++  +       K    I+++V++A+PNL + +V V++  G+ L+  +     R +  
Sbjct: 179 SVVLAFKPAQTLTPKQISGIKNIVSSAIPNLTIENVEVVNEKGEPLSELDELGGARELAA 238

Query: 229 KSLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS 287
             L      +  +E  I   LA    G +   + V AE +   ++  +  YDP++ V   
Sbjct: 239 AQLRYKSNFEQSLEEKIINILAPITGGKEGVVAKVTAEFDFAQKESTQEYYDPNNVVRSE 298

Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
             L +  + ++  +      V  N+  V  + +    + E  +K +  +NYE++      
Sbjct: 299 QNLEESREGAKPKEIGGVPGVVSNIGPV--QGLENEDAKEKYEKSQTTTNYEVSKTISNI 356

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQ----GKIDSYLAEINKIVSAATGINSRRG 403
             +   + RLS AVVV+     ++     +Q          + +I  +V  A G N +RG
Sbjct: 357 KGEFATIRRLSAAVVVDGKYQKQLDNNGVEQLEYIALNQQEMEQITALVRQAIGYNQQRG 416

Query: 404 DTITITSMDFL-ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           D +++++     +   F + T    F++         +  L ++V  +++       +  
Sbjct: 417 DEVSVSNFQLNGQISGFKARTPLERFLETSQELLTPFMPLLKYVVVGIILFLFYKKVIVP 476

Query: 463 LHNIDDAKKGE 473
                   K +
Sbjct: 477 FSERMLEAKAD 487


>gi|217031571|ref|ZP_03437076.1| hypothetical protein HPB128_21g129 [Helicobacter pylori B128]
 gi|216946771|gb|EEC25367.1| hypothetical protein HPB128_21g129 [Helicobacter pylori B128]
          Length = 567

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 123/548 (22%), Positives = 239/548 (43%), Gaps = 29/548 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEV 57
           +L +++ FF       + +I ++A+ +L+  +L     +      Y       L+  L+ 
Sbjct: 6   LLQRIVDFFIKLNK--KQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEGLDS 63

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
           SD   I   L +  I +++S +  +I +P   V + RI LA+QG+P +S   G+E+FD  
Sbjct: 64  SDNALILQHLQQNQIPYKVSKD-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFDTK 121

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
           + FG T F Q I  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+ASVM+
Sbjct: 122 D-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180

Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232
           +              I++L+AAAVP L + +V +++  G+ +   +     + +  + L 
Sbjct: 181 KLKPDMKLSPTQILGIKNLIAAAVPKLTIDNVKIVNENGESIGEGDILENSKELALEQLH 240

Query: 233 IVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
             Q  ++ +E  I   LA  +G  N   + V AE +   ++  +  +DP++ V     L 
Sbjct: 241 YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE 300

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+         + 
Sbjct: 301 EKKEGTPKKQVGGVPGVVSNIGPVQGLKD--NKEPEKYEKSQNTTNYEVGKTISEIKGEF 358

Query: 352 YKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
             L RL+ AVVV+      L +       +   D  L +IN +V  A G N  RGD + +
Sbjct: 359 GTLVRLNAAVVVDGKYKIALKDGTNTLEYEPLSDESLQKINALVKQAIGYNQNRGDDVAV 418

Query: 409 TSMDFLEN-QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463
           ++ +F     + ++ T+    M    +   +    + +++  +++       +     R+
Sbjct: 419 SNFEFNPIMPMLDNATLSEKIMHKTQKILGSFTPLIKYVLVFIVLFIFYKKVIVPFSERM 478

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRIN 520
             +   +  EV                 G +     D + L+++  +       +  +I 
Sbjct: 479 LEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIILEKIR 538

Query: 521 SYVSKQSD 528
             + ++ D
Sbjct: 539 GTLKERPD 546


>gi|90577381|ref|ZP_01233192.1| flagellar M-ring protein [Vibrio angustum S14]
 gi|90440467|gb|EAS65647.1| flagellar M-ring protein [Vibrio angustum S14]
          Length = 581

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 120/564 (21%), Positives = 229/564 (40%), Gaps = 37/564 (6%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           A ++ L   + S       R L+L++V+   +   +    + +S +Y  LY + E  D  
Sbjct: 27  AYINNLKNLWHSS-----QRNLVLSAVLAAIVAAIIVVALWSSSQNYRPLYGQQERFDSG 81

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L    I +R+ +    + V    V K R+ LAA+G+  +   +G +   + +S G
Sbjct: 82  EIISVLETEGIPYRLQEANGQVLVAEGEVAKIRMLLAAKGI-KAKLPTGLDSLKEDSSLG 140

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAI 180
            + FM+       LEGE+ RTI ++  I  ARVH+ +P    F +  A  PTASVM+   
Sbjct: 141 TSQFMETARYRHGLEGELVRTIIALDAIANARVHLAIPRKTLFVRHNAEAPTASVMVELK 200

Query: 181 NPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIVQ 235
                K    EAI +LV  +V  +   +V+V+D  G+LL+A+     +     K L   +
Sbjct: 201 PGEDLKTDQVEAIINLVTGSVTGMKTENVSVVDQYGRLLSADIGSSEMGKVNAKYLDYQK 260

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            ++ ++       L   +G  N+R  V A+L+    Q  + V D    V+   R+  ++ 
Sbjct: 261 NLEKQVIQRAADMLTPIVGPSNYRVQVAADLDFSHVQETKEVVDSTPVVKNEHRIENNSI 320

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
               +          N P V+  +     S    ++ E    Y + +    T +   KL 
Sbjct: 321 D---NIALGVPGSLSNKPPVTGEEENKD-SKNTNERTEINRQYALGSSVRHTQYQQGKLN 376

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           +L+++V++N             +   ++   +I+ ++  A GI++ RGD+++I S +F  
Sbjct: 377 KLNVSVLLNSTAAPNG------KAWTEAETQQISNMIKDAVGISADRGDSLSILSFNFTP 430

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
             +     +       + +    +I      +  L + F  L  L       D ++ E+ 
Sbjct: 431 IAIDAPPAIPWWQDPTVQQPLRYMIGG----ILGLSMIFFVLRPLISHLTGLDRRRDELT 486

Query: 476 GKSILSPPPISSAVTTGLMPNDNIAL---------DSSNQDIFSHSRNLQSRINSYVSKQ 526
                       ++ T         L         D +N    + +  L  + +    + 
Sbjct: 487 FAEEDIAHSYDESLQTREEQEHEETLNERLAAKGIDGTNNAFNASNDLLPPQGSPLEIQL 546

Query: 527 SDLRLLHMIEINEERFAKILRKWA 550
             L+L  +     ER A++L++W 
Sbjct: 547 KHLQL--ISTEEPERVAEVLKQWV 568


>gi|254228798|ref|ZP_04922221.1| flagellar M-ring protein FliF [Vibrio sp. Ex25]
 gi|262396483|ref|YP_003288336.1| flagellar M-ring protein FliF [Vibrio sp. Ex25]
 gi|151938745|gb|EDN57580.1| flagellar M-ring protein FliF [Vibrio sp. Ex25]
 gi|262340077|gb|ACY53871.1| flagellar M-ring protein FliF [Vibrio sp. Ex25]
          Length = 569

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 119/556 (21%), Positives = 232/556 (41%), Gaps = 30/556 (5%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           +L Q + S       R L+L++V+   +   +    + +S  +  LY + E  D+  I  
Sbjct: 21  KLKQIWSSS-----QRNLVLSAVLAAIVAAIIVVALWSSSQSFRPLYSQQERFDIGEIVS 75

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L    + +R+ +    + VP   V K R+ LA++G+  +   +G +   + +S G + F
Sbjct: 76  VLESEGVSYRMQEQNGQVLVPEGEVAKVRMLLASKGV-KAKLPTGLDSLKEDSSLGTSQF 134

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAINPSV 184
           M+       LEGE+ RTI S++ +  ARVH+ +P    F +  +  P+ASVM+       
Sbjct: 135 METARYRHGLEGELVRTIMSLNSVANARVHLAIPRQTLFVRQNSENPSASVMLELKPGED 194

Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIVQAIQH 239
            K    EAI +LV  +V  +    V+V+D  G+LL+A+           K L   + ++ 
Sbjct: 195 LKSEQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLSADVASAEAGKVNAKYLEYQKNVEK 254

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           +I       L   +G  NFR  V A+++    +  + + D ++ V R+     +    + 
Sbjct: 255 QIIQRAADMLTPIVGPSNFRVQVAADMDFSQVEETQEILD-NAPVVRNEHTIHNNSVDQI 313

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           +          N P V+  +V    S     + E    Y + +    T +   ++E++S+
Sbjct: 314 AL--GVPGSLSNQPPVTGEEVETNDSQNTNARSEVNRQYAVGSSVRRTQYQQGQIEKMSV 371

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           +V++N     + +         ++   +I+ ++  A GI++ RGD++++ S +F   ++ 
Sbjct: 372 SVLLNSKASPDGV------AWSEADKEQISNMIMDAVGISAARGDSLSLMSFNFTPIEID 425

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
               +       + +    VI  L+     L + F  L  L       D    E+     
Sbjct: 426 APPALPWWQDPTVQQPIRYVIGGLL----GLAMIFFVLRPLIMHLTGVDKPVPELDFAEP 481

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL----LHMI 535
              P   +  T     ++ +     ++   S S  L    +      S L +    L +I
Sbjct: 482 QEEPDYDNLQTREEREHEEVLDRRLSEKGISASSGLDVNSDMLPPAGSPLEIQLKHLQLI 541

Query: 536 E-INEERFAKILRKWA 550
                ER A+IL++W 
Sbjct: 542 ANEEPERVAEILKQWV 557


>gi|311086968|gb|ADP67048.1| flagellar MS-ring protein [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 545

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 100/427 (23%), Positives = 190/427 (44%), Gaps = 26/427 (6%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
            +   F        R  I++L +  +  + +      ++ SP Y  LY  L   D   I 
Sbjct: 15  KKFNNFLSGFLKNSRFLIILLTAAAITAVSI----SVWIKSPEYQVLYNHLSNEDSGSII 70

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L+E  I ++ +D+   I VP   V + R+ LA   LP   S  G+EL DK   FG++ 
Sbjct: 71  NELNEMKIPYQFTDSDGLILVPKDKVYEIRLRLAENNLPRGGS-IGFELLDKE-KFGISQ 128

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           + ++I   RALEGE+ARTI+ I+ +  AR+HI       F +   + +AS+++       
Sbjct: 129 YNEQINYHRALEGELARTIKKINSVKNARIHIAFSKSSLFLQDKKKSSASIILELQPGRN 188

Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIVQAIQHEI 241
                  AI HL+++++ +L + ++T++D +GKLL    +E   +        + I+   
Sbjct: 189 LNTGQINAIMHLISSSISDLPVENITIVDQSGKLLNQTSVEYDQVNDSQFKYTEEIETRY 248

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRS 297
              I   L   +G+ N  + V A+++ + Q+  +  Y P+S    +  RS ++    +  
Sbjct: 249 RNRIKNILEPLVGIGNIYAQVTAQIDFNAQEKTQEKYSPNSDHKNQSIRSHQIIIHNEIE 308

Query: 298 ETSQPESAVTVEQNMPH--VSDRKVPLPRSLENTD-------KKEEQSNYEINTKSIATT 348
           +++  E       N  +    +  +   ++L+N          ++   NYE+N     T 
Sbjct: 309 KSNIQEETPIPLSNSNNHVYFNNNIKNSKNLKNNYIPVDSKINRDNTVNYELNHSVSHTK 368

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
            +  +++RLS AV+VN  +                 +  I  ++  A G +  RGD++ +
Sbjct: 369 MNIGEIKRLSAAVIVNFSKDKNGK----FVPLSTQKIKNIEHLIREAIGYSKARGDSVHL 424

Query: 409 TSMDFLE 415
            +  F +
Sbjct: 425 VNASFAK 431


>gi|219681452|ref|YP_002467837.1| flagellar M-ring protein [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|219682008|ref|YP_002468392.1| flagellar M-ring protein [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471127|ref|ZP_05635126.1| flagellar MS-ring protein [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219621741|gb|ACL29897.1| flagellar M-ring protein [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624295|gb|ACL30450.1| flagellar M-ring protein [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|311086388|gb|ADP66469.1| flagellar MS-ring protein [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
          Length = 545

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 100/427 (23%), Positives = 190/427 (44%), Gaps = 26/427 (6%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
            +   F        R  I++L +  +  + +      ++ SP Y  LY  L   D   I 
Sbjct: 15  KKFNNFLSGFLKNSRFLIILLTAAAITAVSI----SVWIKSPEYQVLYNHLSNEDSGSII 70

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L+E  I ++ +D+   I VP   V + R+ LA   LP   S  G+EL DK   FG++ 
Sbjct: 71  NELNEMKIPYQFTDSDGPILVPKDKVYEIRLRLAENNLPRGGS-IGFELLDKE-KFGISQ 128

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           + ++I   RALEGE+ARTI+ I+ +  AR+HI       F +   + +AS+++       
Sbjct: 129 YNEQINYHRALEGELARTIKKINSVKNARIHIAFSKSSLFLQDKKKSSASIILELQPGRN 188

Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIVQAIQHEI 241
                  AI HL+++++ +L + ++T++D +GKLL    +E   +        + I+   
Sbjct: 189 LNTGQINAIMHLISSSISDLPVENITIVDQSGKLLNQTSVEYDQVNDSQFKYTEEIETRY 248

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRS 297
              I   L   +G+ N  + V A+++ + Q+  +  Y P+S    +  RS ++    +  
Sbjct: 249 RNRIKNILEPLVGIGNIYAQVTAQIDFNAQEKTQEKYSPNSDHKNQSIRSHQIIIHNEIE 308

Query: 298 ETSQPESAVTVEQNMPH--VSDRKVPLPRSLENTD-------KKEEQSNYEINTKSIATT 348
           +++  E       N  +    +  +   ++L+N          ++   NYE+N     T 
Sbjct: 309 KSNIQEETPIPLSNSNNHVYFNNNIKNSKNLKNNYIPVDSKINRDNTVNYELNHSVSHTK 368

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
            +  +++RLS AV+VN  +                 +  I  ++  A G +  RGD++ +
Sbjct: 369 MNIGEIKRLSAAVIVNFSKDKNGK----FVPLSTQKIKNIEHLIREAIGYSKARGDSVHL 424

Query: 409 TSMDFLE 415
            +  F +
Sbjct: 425 VNASFAK 431


>gi|308184148|ref|YP_003928281.1| flagellar MS-ring protein [Helicobacter pylori SJM180]
 gi|308060068|gb|ADO01964.1| flagellar MS-ring protein [Helicobacter pylori SJM180]
          Length = 567

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 123/548 (22%), Positives = 239/548 (43%), Gaps = 29/548 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEV 57
           +L +++ FF       + +I ++A+ +L+  +L     +      Y       L+  L+ 
Sbjct: 6   LLQRIVDFFIKLNK--KQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFEGLDS 63

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
           SD   I   L +  I +++S +  +I +P   V + RI LA+QG+P +S   G+E+FD  
Sbjct: 64  SDNALILQHLQQNQIPYKVSKD-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFDTK 121

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
           + FG T F Q I  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+ASVM+
Sbjct: 122 D-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180

Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232
           +              I++L+AAAVP L + +V +++  G+ +   +     + +  + L 
Sbjct: 181 KLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLH 240

Query: 233 IVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
             Q  ++ +E  I   LA  +G  N   + V AE +   ++  +  +DP++ V     L 
Sbjct: 241 YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE 300

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+         + 
Sbjct: 301 EKKEGAPKKQVGGVPGVVSNIGPVQGLKD--NKEPEKYEKSQNTTNYEVGKTISEIKGEF 358

Query: 352 YKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
             L RL+ AVVV+      L +       +   D  L +IN +V  A G N  RGD + +
Sbjct: 359 GTLVRLNAAVVVDGKYKIALKDGANALEYEPLSDESLKKINALVKQAIGYNQNRGDDVAV 418

Query: 409 TSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463
           ++ +F     + ++ T+    M    +   +    + +++  +++       +     R+
Sbjct: 419 SNFEFNPMAPMIDNATLSEKIMHKTQKILGSFTPLIKYVLVFIVLFIFYKKVIVPFSERM 478

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRIN 520
             +   +  EV                 G +     D + L+++  +       +  +I 
Sbjct: 479 LEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIILEKIR 538

Query: 521 SYVSKQSD 528
             + ++ D
Sbjct: 539 GTLKERPD 546


>gi|311087544|gb|ADP67623.1| flagellar MS-ring protein [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 545

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 100/427 (23%), Positives = 190/427 (44%), Gaps = 26/427 (6%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
            +   F        R  I++L +  +  + +      ++ SP Y  LY  L   D   I 
Sbjct: 15  KKFNNFLSGFLKNSRFLIILLTAAAITAVSI----SVWIKSPEYQVLYNHLSNEDSGSII 70

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L+E  I ++ +D+   I VP   V + R+ LA   LP   S  G+EL DK   FG++ 
Sbjct: 71  NELNEMKIPYQFTDSDGPILVPKDKVYEIRLRLAENNLPRGGS-IGFELLDKE-KFGISQ 128

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           + ++I   RALEGE+ARTI+ I+ +  AR+HI       F +   + +AS+++       
Sbjct: 129 YNEQINYHRALEGELARTIKKINSVKNARIHIAFSKSSLFLQDKKKSSASIILELQPGRN 188

Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIVQAIQHEI 241
                  AI HL+++++ +L + ++T++D +GKLL    +E   +        + I+   
Sbjct: 189 LNTGQINAIMHLISSSISDLPVENITIVDQSGKLLNQTSVEYDQVNDSQFKYTEEIETRY 248

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRS 297
              I   L   +G+ N  + V A+++ + Q+  +  Y P+S    +  RS ++    +  
Sbjct: 249 RNRIKNILEPLVGIGNIYAQVTAQIDFNAQEKTQEKYSPNSDHKNQSIRSHQIIIHNEIE 308

Query: 298 ETSQPESAVTVEQNMPH--VSDRKVPLPRSLENTD-------KKEEQSNYEINTKSIATT 348
           +++  E       N  +    +  +   ++L+N          ++   NYE+N     T 
Sbjct: 309 KSNIQEETPIPLSNSNNHVYFNNNIKNSKNLKNNYIPVDSKINRDNTVNYELNHSVSHTK 368

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
            +  +++RLS AV+VN  +                 +  I  ++  A G +  RGD++ +
Sbjct: 369 MNIGEIKRLSAAVIVNFSKDKNGK----FVPLSTQKIKNIEHLIREAIGYSKARGDSVHL 424

Query: 409 TSMDFLE 415
            +  F +
Sbjct: 425 VNASFAK 431


>gi|317052367|ref|YP_004113483.1| flagellar M-ring protein FliF [Desulfurispirillum indicum S5]
 gi|316947451|gb|ADU66927.1| flagellar M-ring protein FliF [Desulfurispirillum indicum S5]
          Length = 558

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 134/559 (23%), Positives = 246/559 (44%), Gaps = 27/559 (4%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFV---NSPHYDNLYVKLEVSDVNRI 63
           + Q  +    L RT+ + LA VI   ++  +    +    + P    L+  L + D   +
Sbjct: 9   ISQLSRVLQKLSRTQQITLALVIGASVITIITLIIWAVVASRPGNQVLFSNLAMEDAGEV 68

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  L+E  + + I ++G +I VP ++V + R++LA QGLP   S  G+E+FD     G+T
Sbjct: 69  AAKLAELRVPYEIHNDGRTILVPGNVVHETRLNLAQQGLPR-GSGVGFEIFDSA-GIGMT 126

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
            F+Q++   RAL+GE+ RTI +I GI +ARVHI +P+   F        ASV +R    +
Sbjct: 127 EFIQKVNFRRALQGELGRTISAIDGIESARVHIALPERSLFISQDRGAEASVALRLSPHT 186

Query: 184 VY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAI 237
                  + I HLV+++V  L    VTV+D  G++L         E  +    L   + +
Sbjct: 187 RLSGDQVKGIIHLVSSSVEGLTPEGVTVVDEQGRILNDLIQERSEESTLSVTQLMYQRNM 246

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           +  +++ ++  L + LG  N  S V  EL+ D  + +   YDP + V RS +  ++ ++ 
Sbjct: 247 ERNLQIALDNLLVSVLGQGNSYSNVSLELDFDKVEQQIEAYDPAN-VPRSEQRIEEREQG 305

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
             +Q      V  N+   +D+  P    +    ++ E +NYE+       T    +++RL
Sbjct: 306 REAQ-GGIPGVRANI---ADQDDPEAGLMTTRSREVETTNYEVGRTLTQITRSRGQIKRL 361

Query: 358 SIAVVVNKGRL---TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           ++AV VN   +    + + +   Q +    L +I  +V +A G N  RGD + +T++ F 
Sbjct: 362 TVAVAVNGNYVQQQADGVSQVVYQPRSSEELDKITALVQSAIGYNEGRGDRVVVTNLQFG 421

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
           E     S   ++  M  L +     +   +F +   +     +  + +        + E+
Sbjct: 422 EPP--KSRWQELMEMQDLWKEMLKYLGIALFFLFAFIFI---IRPIVKWVTDMTRDEDEL 476

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
                         V T L              I S S    S +   V +    +L  +
Sbjct: 477 KKTFGTGQKKPKQLVPTQLPKTLAELEAEMESQIDSESSVSASAVRGKVIR---KKLSDI 533

Query: 535 IEINEERFAKILRKWARSE 553
           ++ N    A+++R W   +
Sbjct: 534 VQENPAGAAQLIRIWINDD 552


>gi|148980292|ref|ZP_01815979.1| flagellar M-ring protein [Vibrionales bacterium SWAT-3]
 gi|145961311|gb|EDK26621.1| flagellar M-ring protein [Vibrionales bacterium SWAT-3]
          Length = 557

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 135/526 (25%), Positives = 232/526 (44%), Gaps = 34/526 (6%)

Query: 38  AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97
               + +S  +  LY K    D +++   L E +I +++S +   I VP   V K R+ L
Sbjct: 55  VIMLWTSSERFRPLYSKSANFDSSQVLHMLDEESIRYQLSQDDGQILVPEGDVAKIRMIL 114

Query: 98  AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
           A++GL      SG++  D   S G + FM+      ALEGE+AR+I ++S +  ARVH+ 
Sbjct: 115 ASKGL-KEQLPSGFDSLDSSKSLGESQFMENARYRHALEGELARSITTMSAVSLARVHLA 173

Query: 158 MPDMGSFRKIG-ARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTG 214
           +P    F +    +P ASV++  IN    K    E+I +LV+ AV  L    V V+D  G
Sbjct: 174 IPKESLFMRDDAEQPRASVIVHIINGMDLKPTQVESIINLVSGAVIGLKSEHVRVVDQHG 233

Query: 215 KLLTANEMERNI---LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ 271
           +LL+ +    +I    GK     + ++  +       L   LG  NFR  + ++++    
Sbjct: 234 RLLSNDATVGDITVTTGKQSDYKRNLEKTLVAQATDMLTPILGAANFRVQIASDIDFSKV 293

Query: 272 QIREIVY-DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD 330
           +  E +Y DP   V R   L  D   +E+S          N P V+D + P P      +
Sbjct: 294 EETEEIYADP---VVRKETLLSD--MNESSMALGIPGALSNTPPVTDGE-PQPEPNAKVN 347

Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINK 390
           + E   +Y ++ K   T H    L+ LS+++VVN          + +Q      L  +  
Sbjct: 348 RSETSRDYAVSGKVRHTQHQQGVLQNLSVSIVVNDLA-------NPNQTWTPEELTNVEN 400

Query: 391 IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL 450
           +V +A G N+ RGD+I  T   F+   +     V   F +        ++  L +L+G +
Sbjct: 401 VVRSAIGFNTERGDSIHTTHFPFVIASIPEQAPV-AWFENT------HIMQPLKYLLGVM 453

Query: 451 LVTFLGLHALRRLHN--IDDAKKGEVGGKSILSPPPIS--SAVTTGLMPNDNIALDSSNQ 506
           L   + +  LR L       A++ E+  +S+     I+         + +   +L     
Sbjct: 454 LSGLMIMVVLRPLAQYLTKSAEQEELEAESMEYDDVITKEERAADAALQSKLESLGIDAT 513

Query: 507 DIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
            I +   NL S  +    +   L+L  + + +  R A+ILR W ++
Sbjct: 514 GIKALDDNLPSADSPLEVQIKHLKL--IAKEDPNRVAEILRTWIQA 557


>gi|254779042|ref|YP_003057147.1| flagellar MS-ring protein [Helicobacter pylori B38]
 gi|254000953|emb|CAX28897.1| Flagellar M-ring protein [Helicobacter pylori B38]
          Length = 567

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 123/548 (22%), Positives = 239/548 (43%), Gaps = 29/548 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEV 57
           +L +++ FF       + +I ++A+ +L+  +L     +      Y       L+  L+ 
Sbjct: 6   LLQRIVDFFIKLNK--KQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEGLDS 63

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
           SD   I   L +  I +++S +  +I +P   V + RI LA+QG+P +S   G+E+FD  
Sbjct: 64  SDNALILQHLQQNQIPYKVSKD-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFDTK 121

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
           + FG T F Q I  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+ASVM+
Sbjct: 122 D-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180

Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232
           +              I++L+AAAVP L + +V +++  G+ +   +     + +  + L 
Sbjct: 181 KLKPDMKLSPTQILGIKNLIAAAVPKLTIDNVKIVNENGESIGEGDILENSKELALEQLH 240

Query: 233 IVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
             Q  ++ +E  I   LA  +G  N   + V AE +   ++  +  +DP++ V     L 
Sbjct: 241 YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE 300

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+         + 
Sbjct: 301 EKKEGAPKKQVGGVPGVVSNIGPVQGLKD--NKEPEKYEKSQNTTNYEVGKTISEIKGEF 358

Query: 352 YKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
             L RL+ AVVV+      L +       +   D  L +IN +V  A G N  RGD + +
Sbjct: 359 GTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLQKINALVKQAIGYNQNRGDDVAV 418

Query: 409 TSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463
           ++ +F     + ++ T+    M    +   +    + +++  +++       +     R+
Sbjct: 419 SNFEFNPMAPMIDNATLSEKIMHKTQKILGSFTPLIKYVLVFIVLFIFYKKVIVPFSERM 478

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRIN 520
             +   +  EV                 G +     D + L+++  +       +  +I 
Sbjct: 479 LEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIILEKIR 538

Query: 521 SYVSKQSD 528
             + ++ D
Sbjct: 539 GTLKERPD 546


>gi|308182520|ref|YP_003926647.1| flagellar MS-ring protein [Helicobacter pylori PeCan4]
 gi|308064705|gb|ADO06597.1| flagellar MS-ring protein [Helicobacter pylori PeCan4]
          Length = 567

 Score =  360 bits (925), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 123/548 (22%), Positives = 238/548 (43%), Gaps = 29/548 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEV 57
           +L +++ FF       + +I ++A+ +L+  +L     +      Y       L+  L+ 
Sbjct: 6   LLQRIVDFFIKLNK--KQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFEGLDS 63

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
           SD   I   L +  I +++S +  +I +P   V + RI LA+QG+P +S   G+E+FD  
Sbjct: 64  SDNALILQHLQQNQIPYKVSKD-DTILIPRDKVYEERITLASQGIPKTSK-VGFEIFDTK 121

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
           + FG T F Q I  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+ASVM+
Sbjct: 122 D-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180

Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232
           +              I++L+AAAVP L   +V +++  G+ +   +     + +  + L 
Sbjct: 181 KLKPDMKLSPTQILGIKNLIAAAVPKLTTENVKIVNENGESIGEGDILENSKELALEQLR 240

Query: 233 IVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
             Q  ++ +E  I   LA  +G  N   + V AE +   ++  +  +DP++ V     L 
Sbjct: 241 YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE 300

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+         + 
Sbjct: 301 EKKEGAPKKQVGGVPGVVSNIGPVQGLKD--NKEPEKYEKSQNTTNYEVGKTISEIKGEF 358

Query: 352 YKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
             L RL+ AVVV+      L +       +   D  L +IN +V  A G N  RGD + +
Sbjct: 359 GTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLQKINALVKQAIGYNQNRGDDVAV 418

Query: 409 TSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463
           ++ +F     + ++ T+    M    +   +    + +++  +++       +     R+
Sbjct: 419 SNFEFNPMAPMIDNATLSEKIMHKTQKILGSFTPLIKYILVFIVLFIFYKKVIVPFSERM 478

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRIN 520
             +   +  EV                 G +     D + L+++  +       +  +I 
Sbjct: 479 LEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIVLEKIR 538

Query: 521 SYVSKQSD 528
             + ++ D
Sbjct: 539 GTLKERPD 546


>gi|297617138|ref|YP_003702297.1| flagellar M-ring protein FliF [Syntrophothermus lipocalidus DSM
           12680]
 gi|297144975|gb|ADI01732.1| flagellar M-ring protein FliF [Syntrophothermus lipocalidus DSM
           12680]
          Length = 512

 Score =  360 bits (924), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 130/550 (23%), Positives = 233/550 (42%), Gaps = 64/550 (11%)

Query: 12  KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71
              + L   + ++++  +L+ ++          + +Y+ LY  L V D   I+  L E  
Sbjct: 17  NRWSLLTLNQKVLISGAVLLTLVSLGMLLSSQTAKNYEPLYSGLSVEDAAAITKKLDELK 76

Query: 72  IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131
           I +R+SD GS+I VPS    + R+ LA +GLP     +G+ELF +  SFG T   + +  
Sbjct: 77  ISYRLSDEGSTILVPSEQKYQVRLQLAGEGLPKG--TAGFELF-QSTSFGETETDKRVKY 133

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI--NPSVYKSAE 189
           + AL+GE+ RTI+S+  I +ARVH+V+P+   +    A  TASV+++         +   
Sbjct: 134 LTALQGELVRTIESLDKIESARVHLVLPEPRLYVDQEAPATASVVLKVKIGEELTNREIS 193

Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK------SLSIVQAIQHEIEM 243
            I HLVA +V  L   +V V+D  G LL+A+    + +         +++ + ++ E + 
Sbjct: 194 GIVHLVANSVEKLKPENVVVVDQYGNLLSADIPSADSMASAELSVQQMAVKRQLEREKQQ 253

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            +   L A LG       V AELN D  +     +DP+ +V  S    +++  S  +   
Sbjct: 254 AVQSMLDATLGPGKSVVRVNAELNFDEVEQYSQDFDPEQRVVVSKHTVEESNTSSNTGAA 313

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
           ++  V+ N+P     +     S   ++K E+  NYE +     T      ++R+++AV+V
Sbjct: 314 ASPGVDTNVPTYQGTE-GQGTSSSTSEKTEQTVNYEGDKVETKTKVAPGAIKRMTVAVLV 372

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           ++G               +S   EI + V  A G + +R D++ ++ M F       +  
Sbjct: 373 DEG--------------FESKREEIVEAVKNAVGADEKRNDSVYVSFMKFQTPTEETAPP 418

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
                     + +         LV  +L+ +L             A++ E     +    
Sbjct: 419 ASTW------QKYMLPAGLGATLVIAVLLFWLARR--------RKAQEQEGFEALVDEEI 464

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
           PI S V   L P +   L    +                        +  +I+ N    A
Sbjct: 465 PIESLVERELTPEEREKLKIREE------------------------IDKLIDENPADVA 500

Query: 544 KILRKWARSE 553
           +I+R W   E
Sbjct: 501 QIIRTWLLEE 510


>gi|237752970|ref|ZP_04583450.1| flagellar basal-body m-ring protein flif [Helicobacter winghamensis
           ATCC BAA-430]
 gi|229375237|gb|EEO25328.1| flagellar basal-body m-ring protein flif [Helicobacter winghamensis
           ATCC BAA-430]
          Length = 572

 Score =  360 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 116/492 (23%), Positives = 226/492 (45%), Gaps = 29/492 (5%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNS--------PHYDNLYV 53
           A+ +Q+   +K    L + + +++ + I+V +    A   + ++        P Y  L+ 
Sbjct: 5   ALFEQIRNLYK---KLNKKQKIVILATIVVVVGFISALIVWNSTSNKTGILYPGYAVLFE 61

Query: 54  KLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYEL 113
            +   D   I   L +  I ++I  + ++I +P   V + R+ LA+ G+P SS   G+E+
Sbjct: 62  GVSPEDGALIIQQLQQDKIPYKIPKD-NTILIPQEFVYEERMKLASNGIPKSSK-IGFEI 119

Query: 114 FDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTA 173
           FD  + FG T F Q I  +RA+EGE+ARTI+S++ I  A VH+  P+   F      PTA
Sbjct: 120 FDTKD-FGATDFDQRIKYLRAIEGELARTIESLAPIQKATVHLAQPEKTVFISEQTPPTA 178

Query: 174 SVMI--RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILG 228
           SV++  +       K    I+++V++AVPNL + +V V++  G+ L+  +     R +  
Sbjct: 179 SVVLVFKPAQTLTPKQISGIKNIVSSAVPNLTIQNVEVVNEKGEPLSELDELGGARELAV 238

Query: 229 KSLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS 287
             L      +H +E  I   L+    G +   + V AE +   ++  +  YDP++ V RS
Sbjct: 239 AQLRYKTDFEHALEEKIVNILSPIAGGREGVVAKVTAEFDFAQKESTQEYYDPNN-VVRS 297

Query: 288 IRLSKDAQRS-ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346
           I+  ++ +      +      V  N+  V   +     + E  +K +  +N+EI+     
Sbjct: 298 IQDLEEKREGFRPKEIGGVPGVVSNIGPVQGLED--DNTKEKYEKTQNTTNFEISKTISN 355

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ----GKIDSYLAEINKIVSAATGINSRR 402
              +   + RLS AVVV+     E+     +Q       +  + +I+ +V  A G N++R
Sbjct: 356 IKGEFATIRRLSAAVVVDGRYEKELNEEGVEQLKYIALNEEDMTKISALVRQAIGYNNQR 415

Query: 403 GDTITITSMDFLEN-QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461
           GD +++++         F + T    F++  ++     +  L +++  +++ F     + 
Sbjct: 416 GDEVSVSNFQLNGQLSGFKARTPLERFLEASAKLLEPFMPLLKYVLVGIILFFFYKKVIV 475

Query: 462 RLHNIDDAKKGE 473
                    K +
Sbjct: 476 PFSERMLEAKAD 487


>gi|317012189|gb|ADU82797.1| flagellar MS-ring protein [Helicobacter pylori Lithuania75]
          Length = 567

 Score =  360 bits (923), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 123/548 (22%), Positives = 239/548 (43%), Gaps = 29/548 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEV 57
           +L +++ FF       + +I ++A+ +L+  +L     +      Y       L+  L+ 
Sbjct: 6   LLQRIVDFFIKLNK--KQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEGLDS 63

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
           SD   I   L +  I +++S +  +I +P   V + RI LA+QG+P +S   G+E+FD  
Sbjct: 64  SDNALILQHLQQNQIPYKVSKD-DTILIPRDKVYEERITLASQGIPKTSK-VGFEIFDTK 121

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
           + FG T F Q I  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+ASVM+
Sbjct: 122 D-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180

Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232
           +              I++L+AAAVP L + +V +++  G+ +   +     + +  + L 
Sbjct: 181 KLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLH 240

Query: 233 IVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
             Q  ++ +E  I   LA  +G  N   + V AE +   ++  +  +DP++ V     L 
Sbjct: 241 YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE 300

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+         + 
Sbjct: 301 EKKEGAPKKQVGGVPGVVSNIGPVQGLKD--NKEPEKYEKSQNTTNYEVGKTISEIKGEF 358

Query: 352 YKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
             L RL+ AVVV+      L +       +   D  L +IN +V  A G N  RGD + +
Sbjct: 359 GTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDDVAV 418

Query: 409 TSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463
           ++ +F     + ++ T+    M    +   +    + +++  +++       +     R+
Sbjct: 419 SNFEFNPMAPVIDNATLSEKIMRKTQKILGSFTPLIKYVLVFIVLFIFYKKVIVPFSERM 478

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRIN 520
             +   +  EV                 G +     D + L+++  +       +  +I 
Sbjct: 479 LEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIILEKIR 538

Query: 521 SYVSKQSD 528
             + ++ D
Sbjct: 539 GTLKERPD 546


>gi|15616695|ref|NP_239907.1| flagellar MS-ring protein [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11386782|sp|P57175|FLIF_BUCAI RecName: Full=Flagellar M-ring protein
 gi|25304707|pir||A84938 flagellar M-ring protein [imported] - Buchnera sp. (strain APS)
 gi|10038758|dbj|BAB12793.1| flagellar M-ring protein [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 545

 Score =  360 bits (923), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 100/427 (23%), Positives = 190/427 (44%), Gaps = 26/427 (6%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
            +   F        R  I++L +  +  + +      ++ SP Y  LY  L   D   I 
Sbjct: 15  KKFNNFLSGFLKNSRFLIILLTAAAITAVSI----SVWIKSPEYQVLYNHLSNEDRGSII 70

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L+E  I ++ +D+   I VP   V + R+ LA   LP   S  G+EL DK   FG++ 
Sbjct: 71  NELNEMKIPYQFTDSDGPILVPKDKVYEIRLRLAENNLPRGGS-IGFELLDKE-KFGISQ 128

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           + ++I   RALEGE+ARTI+ I+ +  AR+HI       F +   + +AS+++       
Sbjct: 129 YNEQINYHRALEGELARTIKKINSVKNARIHIAFSKSSLFLQDKKKSSASIILELQPGRN 188

Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIVQAIQHEI 241
                  AI HL+++++ +L + ++T++D +GKLL    +E   +        + I+   
Sbjct: 189 LNTGQINAIMHLISSSISDLPVENITIVDQSGKLLNQTSVEYDQVNDSQFKYTEEIETRY 248

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRS 297
              I   L   +G+ N  + V A+++ + Q+  +  Y P+S    +  RS ++    +  
Sbjct: 249 RNRIKNILEPLVGIGNIYAQVTAQIDFNAQEKTQEKYSPNSDHKNQSIRSHQIIIHNEIE 308

Query: 298 ETSQPESAVTVEQNMPH--VSDRKVPLPRSLENTD-------KKEEQSNYEINTKSIATT 348
           +++  E       N  +    +  +   ++L+N          ++   NYE+N     T 
Sbjct: 309 KSNIQEETPIPLSNSNNHVYFNNNIKNSKNLKNNYIPVDSKINRDNTVNYELNHSVSHTK 368

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
            +  +++RLS AV+VN  +                 +  I  ++  A G +  RGD++ +
Sbjct: 369 MNIGEIKRLSAAVIVNFSKDKNGK----FVPLSTQKIKNIEHLIREAIGYSKARGDSVHL 424

Query: 409 TSMDFLE 415
            +  F +
Sbjct: 425 VNASFAK 431


>gi|157959913|ref|YP_001499947.1| flagellar MS-ring protein [Shewanella pealeana ATCC 700345]
 gi|157844913|gb|ABV85412.1| flagellar M-ring protein FliF [Shewanella pealeana ATCC 700345]
          Length = 566

 Score =  359 bits (922), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 122/569 (21%), Positives = 229/569 (40%), Gaps = 39/569 (6%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L+ L + ++      R   +++ +V+ +     +    +  S  Y  LY   E  + ++I
Sbjct: 21  LNSLKEKWQQYNRGDRQ--VVILAVLAIVAACVIVLMLWSASQGYRPLYGNQEGVETSQI 78

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    I +RI  N   I V    +G AR+ LAA+G+ +   +    L  + ++ G +
Sbjct: 79  IEVLEAEGISYRIDANSGLILVTEDKLGPARMLLAARGVKAKVPSGMESL--ENSNIGTS 136

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAINP 182
            FM++     +LEGE++RTI ++  +  ARVH+ +P    F +     PTASVM+     
Sbjct: 137 QFMEQAKYRYSLEGELSRTIMALKAVKTARVHLAIPKKTLFIRQQPELPTASVMLELYAG 196

Query: 183 S--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQA 236
           S    +  E+I +LVA +V  +    V V+D  G  L++    N+       + L   Q 
Sbjct: 197 SNIQPEQIESIVNLVAGSVTGMTPDRVQVVDQEGNHLSSSISVNKDITQARDRQLKYTQE 256

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           ++  +    +  L   LG D+F   V A +N +  +  +   DP + V      +K+   
Sbjct: 257 LEQSLIDRASSMLLPILGRDHFEVQVAANVNFNQVEETKESLDPLAVV------TKENLT 310

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
           S  +  + A+ +   + +          +       +E   ++       T +   +LE 
Sbjct: 311 SNETNSDMALGIPGALSNQPPAAEADESNARRNLNSQESRQFDTGRSVRHTRYQQMQLEN 370

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           LS++V++NK         + + G   + L +++ +V  A G ++ RGD  +I S DF   
Sbjct: 371 LSVSVLINKQS-------AGETGWTQTQLDQLSSMVQDAIGFSAARGDQFSINSFDFAPT 423

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR-LHNIDDAKKGEVG 475
           Q+     +     +    +    I AL+     L + F  L  L + L    +     + 
Sbjct: 424 QIAEFEPMPWWQGESYQTYLRYFIGALL----GLAMIFFVLRPLVKHLTKTVEHNLKSID 479

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDS--------SNQDIFSHSRNLQSRINSYVSKQS 527
             +  S PP  + VT     N+  A+          +    +S   +L    +    K  
Sbjct: 480 EPAQPSLPPAQATVTKLEGGNNAQAIADQLIGQNQKTGDLNWSGDASLPEPSSPLAVKME 539

Query: 528 DLRLLHMIEINEERFAKILRKWARSEIED 556
            L L  +      R A+++  W      D
Sbjct: 540 HLSL--LANQEPARVAEVIAHWIGDTEHD 566


>gi|317008990|gb|ADU79570.1| flagellar MS-ring protein [Helicobacter pylori India7]
          Length = 567

 Score =  359 bits (922), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 123/548 (22%), Positives = 238/548 (43%), Gaps = 29/548 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEV 57
           +L +++ FF       + +I ++A+ +L+  +L     +      Y       L+  L+ 
Sbjct: 6   LLQRIVDFFIKLNK--KQKIALIATGVLITALLVFLLLYPFKEKDYAQGGYGVLFEGLDS 63

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
           SD   I   L +  I +++S +  +I +P   V + RI LA+QG+P +S   G+E+FD  
Sbjct: 64  SDNALILQHLQQNQIPYKVSKD-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFDTK 121

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
           + FG T F Q I  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+ASVM+
Sbjct: 122 D-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180

Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232
           +              I++L+AAAVP L   +V +++  G+ +   +     + +  + L 
Sbjct: 181 KLKPDMKLSPTQILGIKNLIAAAVPKLTTDNVKIVNENGESIGEGDILENSKELALEQLH 240

Query: 233 IVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
             Q  ++ +E  I   LA  +G  N   + V AE +   ++  +  +DP++ V     L 
Sbjct: 241 YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE 300

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+         + 
Sbjct: 301 EKKEGASKKQVGGVPGVVSNIGPVQGLKD--NKEPEKYEKSQNTTNYEVGKTISEIKGEF 358

Query: 352 YKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
             L RL+ AVVV+      L +       +   D  L +IN +V  A G N  RGD + +
Sbjct: 359 GTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLQKINALVKQAIGYNQNRGDDVAV 418

Query: 409 TSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463
           ++ +F     + ++ T+    M    +   +    + +++  +++       +     R+
Sbjct: 419 SNFEFNPMAPMIDNATLSEKIMHKTQKVLGSFTPLIKYVLVFIVLFIFYKKVIVPFSERM 478

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRIN 520
             +   +  EV                 G +     D + L+++  +       +  +I 
Sbjct: 479 LEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIILEKIR 538

Query: 521 SYVSKQSD 528
             + ++ D
Sbjct: 539 GTLKERPD 546


>gi|163744330|ref|ZP_02151690.1| flagellar M-ring protein FliF [Oceanibulbus indolifex HEL-45]
 gi|161381148|gb|EDQ05557.1| flagellar M-ring protein FliF [Oceanibulbus indolifex HEL-45]
          Length = 567

 Score =  359 bits (921), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 146/571 (25%), Positives = 253/571 (44%), Gaps = 24/571 (4%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++Q+++   +   LG  R+ +L  + L            + +P Y  +Y +L     +++
Sbjct: 1   MNQIVE---NLKDLGPKRLALLGGIGLAITAAVFIGARTILAPTYVPVYSQLSPGTASQM 57

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L +A +   +S NG +ISV  + + +AR+ LA  GLP      G+E+FD ++  G+ 
Sbjct: 58  MQTLEQAGLTVDLSRNGDTISVAENDIARARMALADAGLPGEGVP-GWEIFDNMSGMGMN 116

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--AIN 181
           SFMQ++ R+RALEGE+AR+IQ+ISGI AARVH+V+P+  +F +  A  + SV++R  A  
Sbjct: 117 SFMQKVNRLRALEGELARSIQTISGIKAARVHLVLPERAAFSRSRAEASGSVIVRSQANA 176

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEI 241
                 A+AI+ LVA+AV +L+  +VTVL ++G+ + A +   +           I+ ++
Sbjct: 177 SMTRSQAQAIQALVASAVADLEAQNVTVLSASGETILAKDDGGSSDFSLQGQRSMIEEQL 236

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
              +   L A +G  N R  V  +L  + +      +DP  +V RSI   +    +ET  
Sbjct: 237 AQKVESILNARVGPGNARVRVSVDLTTEREVRVSRTFDPAQQVARSIET-RVRNSNETDP 295

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
               V V  N+P                 + +E  NYEI +       +   +ER+S+AV
Sbjct: 296 ATGTVDVANNIPDELRDDAGGGAGQSTRSENDEIINYEIGSVQSEMVREPGDIERISVAV 355

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           +VN    T   G      + +  +  ++++VS A G +  RGD + + S+ FL+     S
Sbjct: 356 LVNGSYGTLPDGSEGYIERSEEEMQRLSQLVSTAIGFDQNRGDQVQVDSLQFLDFDSEFS 415

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR---------RLHNIDDAKKG 472
                    +L+ +  T++ +L  L    ++  LG   LR                A   
Sbjct: 416 NPGGRGLGAVLADNAMTILRSLFALALVAIIMLLGARPLRMVLDATLPQPALAGAGADAA 475

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQ--------DIFSHSRNLQSRINSYVS 524
            +GG    S P   +  T    P + +   +  Q        D         + +   V 
Sbjct: 476 LLGGPEEDSAPKALTGGTQNEPPQNRLPTPAGAQTGAVLGPMDEMPRDMVQLASVEGAVH 535

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIE 555
                 +  + E N E   ++L  W     E
Sbjct: 536 HSKLRAVAELAEDNAEDALRVLGDWLAEGDE 566


>gi|89072278|ref|ZP_01158857.1| flagellar M-ring protein [Photobacterium sp. SKA34]
 gi|89051810|gb|EAR57262.1| flagellar M-ring protein [Photobacterium sp. SKA34]
          Length = 582

 Score =  359 bits (921), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 123/565 (21%), Positives = 235/565 (41%), Gaps = 43/565 (7%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +  L   + S       R L+L++V+   +   +    + +S +Y  LY + E  D   I
Sbjct: 29  MKNLKNLWHSS-----QRNLVLSAVLAAIVAAIIVVALWSSSQNYRPLYGQQERFDSGEI 83

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    I +R+ +    + V  S V K R+ LAA+G+  +   +G +   + +S G +
Sbjct: 84  ISVLETEGIPYRLQEANGQVLVAESEVAKIRMLLAAKGI-KAKLPTGLDSLKEDSSLGTS 142

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAINP 182
            FM+       LEGE+ RTI ++  I  ARVH+ +P    F +  A  PTASVM+     
Sbjct: 143 QFMETARYRHGLEGELVRTIIALDAIANARVHLAIPRKTLFVRHNAEAPTASVMVELKPG 202

Query: 183 SVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIVQAI 237
              K    EAI +LV  +V  +   +V+V+D  G+LL+A+     +     K L   + +
Sbjct: 203 EDLKTEQVEAIINLVTGSVTGMKTENVSVVDQYGRLLSADIGSAEMGKVNAKYLDYQKNL 262

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           ++++       L   +G  N+R  V A+L+    Q  + V D    V+   R+  ++   
Sbjct: 263 ENQVIQRAADMLTPIVGPSNYRVQVAADLDFSHVQETKEVVDSTPVVKNEHRIENNSID- 321

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
             +          N P V+  +     S    ++ E    Y + +    T +   KL +L
Sbjct: 322 --NIALGVPGSLSNKPPVTGEEENKD-SKNTNERTEINRQYALGSSVRHTQYQQGKLNKL 378

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           +++V++N             +   ++   +I+ ++  A GI++ RGD+++I S +F    
Sbjct: 379 NVSVLLNSTAAPNG------KAWTEAETQQISNMIKDAVGISADRGDSLSILSFNFTPIA 432

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL---HNIDDAKKGEV 474
           +     +             TV   L +++G +L   +    LR+L       D ++ E+
Sbjct: 433 IDAPPAIPWW-------QDPTVQQPLRYMIGGILGLSMIFFVLRKLISHLTGLDRRRDEL 485

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIAL---------DSSNQDIFSHSRNLQSRINSYVSK 525
                 +      ++ T         L         D++N    + +  L  + +    +
Sbjct: 486 TFAEEDTAHSYDESLQTREEQEHEETLNERLAAKGIDATNNAFNASNDLLPPQGSPLEIQ 545

Query: 526 QSDLRLLHMIEINEERFAKILRKWA 550
              L+L  +     ER A++L++W 
Sbjct: 546 LKHLQL--ISTEEPERVAEVLKQWV 568


>gi|325995631|gb|ADZ51036.1| Flagellar M-ring protein [Helicobacter pylori 2018]
 gi|325997227|gb|ADZ49435.1| Flagellar MS-ring protein [Helicobacter pylori 2017]
          Length = 567

 Score =  359 bits (921), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 123/548 (22%), Positives = 237/548 (43%), Gaps = 29/548 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEV 57
           +L +++ FF       + +I ++A+ +L+  +L     +      Y       L+ +L+ 
Sbjct: 6   LLQRIVDFFIKLNK--KQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFERLDS 63

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
           SD   I   L +  I +++  +  +I VP   V + RI LA+QG+P +S   G+E+FD  
Sbjct: 64  SDNALILQHLQQNQIPYKVLKD-DTILVPKDKVYEERITLASQGIPKTSK-VGFEIFDTK 121

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
           + FG T F Q I  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+ASVM+
Sbjct: 122 D-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180

Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232
           +              I++L+AAAVP L + +V +++  G+ +   +     + +  + L 
Sbjct: 181 KLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLR 240

Query: 233 IVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
             Q  ++ +E  I   LA  +G  N   + V AE +   ++  +  +DP++ V     L 
Sbjct: 241 YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE 300

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+         + 
Sbjct: 301 EKKEGAPKKQVGGVPGVVSNIGPVQGLKD--NKEPEKYEKSQNTTNYEVGKTISEIKGEF 358

Query: 352 YKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
             L RL+ AVVV+        +       +   D  L +IN +V  A G N  RGD + +
Sbjct: 359 GTLVRLNAAVVVDGKYKIAFKDGANALEYEPLSDESLKKINALVKQAIGYNQNRGDDVAV 418

Query: 409 TSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463
           ++ +F     + ++ T     M    +   +    + +++  +++       +     R+
Sbjct: 419 SNFEFNPMAPMIDNATFSEKIMHKTQKILGSFTPLIKYILVFIVLFIFYKKVIVPFSERM 478

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRIN 520
             +   +  EV                 G +     D + L++S  +       +  +I 
Sbjct: 479 LEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNASFSEEEVRYEIILEKIR 538

Query: 521 SYVSKQSD 528
             + ++ D
Sbjct: 539 GTLKERPD 546


>gi|188527156|ref|YP_001909843.1| flagellar MS-ring protein [Helicobacter pylori Shi470]
 gi|188143396|gb|ACD47813.1| flagellar MS-ring protein [Helicobacter pylori Shi470]
 gi|308061699|gb|ADO03587.1| flagellar MS-ring protein [Helicobacter pylori Cuz20]
          Length = 567

 Score =  359 bits (921), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 123/548 (22%), Positives = 238/548 (43%), Gaps = 29/548 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEV 57
           +L +++ FF       + +I ++A+ +L+  +L     +      Y       L+ +L+ 
Sbjct: 6   LLQRIVDFFIKLNK--KQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFERLDS 63

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
           SD   I   L +  I ++I  +  +I +P   V + RI LA+QG+P +S   G+E+FD  
Sbjct: 64  SDNALILQHLQQNQIPYKILKD-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFDTK 121

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
           + FG T F Q I  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+ASVM+
Sbjct: 122 D-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180

Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232
           +              I++L+AAAVP L   +V +++  G+ +   +     + +  + L 
Sbjct: 181 KLKPDMKLSPTQILGIKNLIAAAVPKLTTENVKIVNENGESIGEGDILENSKELALEQLR 240

Query: 233 IVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
             Q  ++ +E  I   LA  +G  N   + V AE +   ++  +  +DP++ V     L 
Sbjct: 241 YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQRKSTKETFDPNNVVRSEQNLE 300

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+         + 
Sbjct: 301 EKKEGAPKKQVGGVPGVVSNIGPVQGLKD--NKEPEKYEKSQNTTNYEVGKTISEIKGEF 358

Query: 352 YKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
             L RL+ AVVV+      L +       +   D  L +IN +V  A G N  RGD + +
Sbjct: 359 GTLVRLNAAVVVDGKYKIVLKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDDVAV 418

Query: 409 TSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463
           ++ +F     + ++ T+    M    +   +    + +++  +++       +     R+
Sbjct: 419 SNFEFNPMAPMLDNATLSEKIMHKTQKILGSFTPLIKYILVFIVLFIFYKKVIVPFSERM 478

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRIN 520
             +   +  EV                 G +     D + L+++  +       +  +I 
Sbjct: 479 LEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIVLEKIR 538

Query: 521 SYVSKQSD 528
             + ++ D
Sbjct: 539 GTLKERPD 546


>gi|89068713|ref|ZP_01156099.1| putative flagellar M-ring protein [Oceanicola granulosus HTCC2516]
 gi|89045676|gb|EAR51738.1| putative flagellar M-ring protein [Oceanicola granulosus HTCC2516]
          Length = 562

 Score =  358 bits (920), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 147/563 (26%), Positives = 257/563 (45%), Gaps = 18/563 (3%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +     +  SLG+ R++ LA+  +      +     V +P Y  LY  L  S   ++   
Sbjct: 1   MQSIINNLMSLGQRRLIALAATGIGLTAALLLGVGAVLAPTYAPLYSGLSPSGAAQVVGT 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L +A     +S +G+ +SVP S + +AR+ LA QGLP      G+ELFD     G+ SFM
Sbjct: 61  LEQAGFRVDVSADGTMVSVPDSDLARARMALADQGLPDEGVP-GWELFDNSTGLGMNSFM 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV-- 184
           Q I R+RALEGE+AR+IQ+I  + +ARVH+V+P+  +F +    P+ASV++RA   S   
Sbjct: 120 QRINRLRALEGELARSIQTIDAVDSARVHLVLPEREAFSRARPEPSASVIVRASGRSEIG 179

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN 244
              A AIR+LVAAAVP+L    VTVL ++G+ + A++ E        S+  +++  +  +
Sbjct: 180 RNQARAIRNLVAAAVPDLAPSRVTVLSASGETILADDGEPGSDVSLQSVRASLEDRMSRS 239

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           I++ L+A +G  N R  V  +L  + Q I +  YDP+ +V RS     +    +T   + 
Sbjct: 240 IDQILSARVGAGNARVQVSVDLTTERQVILQQSYDPNQRVVRSTETRNETVE-DTQAGQD 298

Query: 305 AVTVEQNMPHVSDRKV-PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
            V    N+P     +      +  N    +E  NYEI +       +   +E++S+AV+V
Sbjct: 299 QVDAAGNLPEALGGEAEGSTGARSNRTAADEIVNYEIGSTRSEVIREPGDVEKISVAVLV 358

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           N        G    + +    +  + ++V +A G +++RGDT+++ S+ F++  +     
Sbjct: 359 NGIYNRLPNGDVEYEERPPEEIERLTRLVESAVGYDAQRGDTVSVESLRFMDYSMELGDG 418

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
                  +L  + +  +  L  +    LV   G+  L           G +      +P 
Sbjct: 419 TGGGIGQLLLGNASAAMRGLFAIGIVALVMLFGVRPLATRLTARQEPDGLIAQSPDGAPL 478

Query: 484 PISSAVTTGLMPNDNIALDS-------SNQDIFSHSRNLQ------SRINSYVSKQSDLR 530
           P               A           + +++   R  Q      + +N  V +     
Sbjct: 479 PAVRPAEAAPGAPRPAAGAGAEGVSAMPDAELYDPLRGAQGEYVNLAAVNGSVQRNRLQA 538

Query: 531 LLHMIEINEERFAKILRKWARSE 553
           +  ++E+      ++LR W   E
Sbjct: 539 IGELVEVEPAESLRVLRTWLAQE 561


>gi|153001452|ref|YP_001367133.1| flagellar MS-ring protein [Shewanella baltica OS185]
 gi|217972616|ref|YP_002357367.1| flagellar MS-ring protein [Shewanella baltica OS223]
 gi|304409960|ref|ZP_07391579.1| flagellar M-ring protein FliF [Shewanella baltica OS183]
 gi|307302327|ref|ZP_07582085.1| flagellar M-ring protein FliF [Shewanella baltica BA175]
 gi|151366070|gb|ABS09070.1| flagellar M-ring protein FliF [Shewanella baltica OS185]
 gi|217497751|gb|ACK45944.1| flagellar M-ring protein FliF [Shewanella baltica OS223]
 gi|304351369|gb|EFM15768.1| flagellar M-ring protein FliF [Shewanella baltica OS183]
 gi|306914365|gb|EFN44786.1| flagellar M-ring protein FliF [Shewanella baltica BA175]
          Length = 560

 Score =  358 bits (920), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 111/551 (20%), Positives = 222/551 (40%), Gaps = 28/551 (5%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
           +   +   R + +   + + + L +    +   P Y  L  K+E  ++ ++   L +  +
Sbjct: 25  NLGGVDMMRQVTMILALAICLALAVFVMLWAQEPEYRPL-GKMETQEMVQVLDVLDKNKV 83

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
            ++I  +   I VP     + ++ L+  G+   S  +  +  ++ + FG++  M++    
Sbjct: 84  KYQIDVD--VIKVPEDKYQEVKMMLSRAGV--DSPAASQDFLNQDSGFGVSQRMEQARLK 139

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV-YKSAEAI 191
            + E  +AR I+ +  +  A+V + +P    F +  ++P+A+V+I      +     +AI
Sbjct: 140 HSQEENLARAIEQLQSVSRAKVILALPKENVFARNASKPSATVVINTRRGGLGQGEVDAI 199

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEMNINKAL 249
             +VA+AV  L+   VTV DS G+LL +   +       + L +VQ  + E    I   L
Sbjct: 200 VDIVASAVQGLEPSRVTVTDSNGRLLNSGSQDGASATARRELELVQQKEAEYRTKIESIL 259

Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309
              LG DNF S V   ++    +     Y+PD    RS    ++     +S         
Sbjct: 260 VPILGPDNFTSQVDVSMDFTAVEQTSKRYNPDLPSLRSEMTVENNTTGGSS--GGIPGAL 317

Query: 310 QNMPHV-----SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
            N P +      D       +      +E   N+E++T    T      + R+S++V V+
Sbjct: 318 SNQPPMESNIPQDATKATESATAGNSHREATRNFELDTTISHTRQQVGAVRRISVSVAVD 377

Query: 365 -KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
            K       G+ A   + +  L  I +++  A G +S+RGD + + ++ F++  + +   
Sbjct: 378 FKPGAAGENGQVARVARTEQELTNIRRLLEGAVGFSSQRGDVLEVVTVPFMDQLVEDLPA 437

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG--GKSILS 481
           +++       R     I ALV LV  L V       L+RL   D     E G  G  +  
Sbjct: 438 LELWEQPWFWRAIKLGIGALVILVLILAV---VRPMLKRLIYPDSVNMPEDGRLGNELAE 494

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
                +A T G+       L++   +            N +        +  ++    E 
Sbjct: 495 IEDQYAADTLGM-------LNTQEAEYSYADDGSIHIPNLHKDDDMIKAIRALVANEPEL 547

Query: 542 FAKILRKWARS 552
             ++++ W + 
Sbjct: 548 STQVVKNWLQD 558


>gi|126175128|ref|YP_001051277.1| flagellar MS-ring protein [Shewanella baltica OS155]
 gi|125998333|gb|ABN62408.1| flagellar M-ring protein FliF [Shewanella baltica OS155]
          Length = 560

 Score =  358 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 111/551 (20%), Positives = 221/551 (40%), Gaps = 28/551 (5%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
           +   +   R + +   + + + L +    +   P Y  L  K+E  ++ ++   L +  +
Sbjct: 25  NLGGVDMMRQVTMILALAICLALAVFVMLWAQEPEYRPL-GKMETQEMVQVLDVLDKNKV 83

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
            ++I  +   I VP     + ++ L+  G+   S  +  +  ++ + FG++  M++    
Sbjct: 84  KYQIDVD--VIKVPEDKYQEVKMMLSRAGV--DSPAASQDFLNQDSGFGVSQRMEQARLK 139

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV-YKSAEAI 191
            + E  +AR I+ +  +  A+V + +P    F +  ++P+A+V+I      +     +AI
Sbjct: 140 HSQEENLARAIEQLQSVSRAKVILALPKENVFARNASKPSATVVINTRRGGLGQGEVDAI 199

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEMNINKAL 249
             +VA+AV  L+   VTV DS G+LL +   +       + L +VQ  + E    I   L
Sbjct: 200 VDIVASAVQGLEPSRVTVTDSNGRLLNSGSQDGASATARRELELVQQKEAEYRTKIESIL 259

Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309
              LG DNF S V   ++    +     Y+PD    RS    ++     +S         
Sbjct: 260 VPILGPDNFTSQVDVSMDFTAVEQTSKRYNPDLPALRSEMTVENNTTGGSS--GGIPGAL 317

Query: 310 QNMPHV-----SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
            N P +      D              +E   N+E++T    T      + R+S++V V+
Sbjct: 318 SNQPPMESNIPQDATKATESVTAGNSHREATRNFELDTTISHTRQQVGAVRRISVSVAVD 377

Query: 365 -KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
            K       G+ A   + +  L  I +++  A G +S+RGD + + ++ F++  + +   
Sbjct: 378 FKPGAAGENGQVARVARTEQELTNIRRLLEGAVGFSSQRGDVLEVVTVPFMDQLVEDLPA 437

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG--GKSILS 481
           +++       R     I ALV LV  L V       L+RL   D     E G  G  +  
Sbjct: 438 LELWEQPWFWRAIKLGIGALVILVLILAV---VRPMLKRLIYPDSVNMPEDGRLGNELAE 494

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
                +A T G+       L++   +            N +        +  ++    E 
Sbjct: 495 IEDQYAADTLGM-------LNTQEAEYSYADDGSIHIPNLHKDDDMIKAIRALVANEPEL 547

Query: 542 FAKILRKWARS 552
             ++++ W + 
Sbjct: 548 STQVVKNWLQD 558


>gi|119469985|ref|ZP_01612790.1| flagellar M-ring protein [Alteromonadales bacterium TW-7]
 gi|119446695|gb|EAW27968.1| flagellar M-ring protein [Alteromonadales bacterium TW-7]
          Length = 571

 Score =  358 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 100/558 (17%), Positives = 224/558 (40%), Gaps = 23/558 (4%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +Q   +  S   +   R + L   + + + + +    +   P    L  K++  ++    
Sbjct: 27  EQKSGYLSSLNGVDLLRQVTLVIALGICLAIAIFIIIWARQPDMRPL-GKMQTEELIETL 85

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L    I++++  +G+ + VP +     ++ +  +GL      SG ++  +   FG++ 
Sbjct: 86  DFLDAQKIEYQV--DGNVVLVPETEYQNIKLLMTREGL-EQGPTSGSDIIMQDMGFGVSQ 142

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
            ++        E ++ARTI+ ++ I  ARV + +P    F +   +P+A+V++       
Sbjct: 143 RLERERLKHGREQQLARTIEELNNITRARVLLAIPKENVFARREKKPSATVVLTLKRGRS 202

Query: 185 Y--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHE 240
              +  +++  +VA+AV  L+   VTV D  G+LL +           K   I +  + E
Sbjct: 203 LDSEEVDSVVDMVASAVQGLEPARVTVTDQNGRLLNSGSQTSLAARSRKEYDIERKREQE 262

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I+  L   +G+ N+ + V   ++    +  +  Y+PD    RS    ++      +
Sbjct: 263 YLEKIDSILIPVVGLANYTAQVDLSMDFSAVEETQKRYNPDLPAVRSETTFEENNIGGLA 322

Query: 301 QP-----ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
                   +   V  N+P V+ +      +  +   KE   NYE++T           + 
Sbjct: 323 VGIPGALTNQPPVNSNIPEVAGQGGAGSATSPSRTHKEATRNYELDTTISHKRQQTGVIR 382

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           R+S++V V+        G +    +    L+ I +++    G + +RGD + + ++ F+ 
Sbjct: 383 RISVSVAVDYIPKVGENGETTMTPRSVEELSNIRRLLQGGVGFDMQRGDALEVVTVPFVR 442

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
                  +V +   D   +    V+ ALV +V   L+  +    L+RL   DD  + E  
Sbjct: 443 EATDFDISVPLWEQDWFMKIIRLVLGALVIIV---LIMAVVKPMLKRLIYPDDTLE-EYD 498

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
             ++ +   I  +    L  + + A    + D      +L    +   +      +  ++
Sbjct: 499 EDALSAGVDIGDSTLDMLNKDFDSASIGFSSDGTLQLPDLHGDEDLLKA------IRALV 552

Query: 536 EINEERFAKILRKWARSE 553
               E  +++++ W   +
Sbjct: 553 ANEPELSSQVVKAWLTED 570


>gi|261839198|gb|ACX98963.1| flagellar M-ring protein FliF [Helicobacter pylori 52]
          Length = 567

 Score =  358 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 123/548 (22%), Positives = 239/548 (43%), Gaps = 29/548 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEV 57
           +L +++ FF       + +I ++A+ +L+  +L     +      Y       L+ +L+ 
Sbjct: 6   LLQRIVDFFIKLNK--KQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFERLDS 63

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
           SD   I   L +  I ++I  +  +I +P   V + RI LA+QG+P +S   G+E+FD  
Sbjct: 64  SDNALILQHLQQNQIPYKILKD-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFDTK 121

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
           + FG T F Q I  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+ASVM+
Sbjct: 122 D-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180

Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232
           +              I++L+AAAVP L + +V +++  G+ +   +     + +  + L 
Sbjct: 181 KLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLR 240

Query: 233 IVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
             Q  ++ +E  I   LA  +G  N   + V AE +   ++  +  +DP++ V     L 
Sbjct: 241 YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE 300

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+         + 
Sbjct: 301 EKKEGAPKKQVGGVPGVVSNIGPVQGLKD--NKEPEKYEKSQNTTNYEVGKTISEIKGEF 358

Query: 352 YKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
             L RL+ AVVV+      L +       +   D  L +IN +V  A G N  RGD + +
Sbjct: 359 GTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDDVAV 418

Query: 409 TSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463
           ++ +F     + ++ T+    M    +   +    + +++  +++       +     R+
Sbjct: 419 SNFEFNPMAPMLDNATLSEKIMHKTQKVLGSFTPLIKYILVFIVLFIFYKKVIVPFSERM 478

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRIN 520
             +   +  EV                 G +     D + L+++  +       +  +I 
Sbjct: 479 LEVMPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIILEKIR 538

Query: 521 SYVSKQSD 528
             + ++ D
Sbjct: 539 GTLKERPD 546


>gi|15611393|ref|NP_223044.1| flagellar MS-ring protein [Helicobacter pylori J99]
 gi|4154846|gb|AAD05899.1| FLAGELLAR M-RING PROTEIN [Helicobacter pylori J99]
          Length = 567

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 124/548 (22%), Positives = 239/548 (43%), Gaps = 29/548 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEV 57
           +L +++ FF       + +I ++A+ +L+  +L     +      Y       L+ +L+ 
Sbjct: 6   LLQRIVDFFIKLNK--KQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFERLDS 63

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
           SD   I   L +  I +++  +  +I VP   V + RI LA+QG+P +S   G+E+FD  
Sbjct: 64  SDNALILQHLQQNQIPYKVLKD-DTILVPKDKVYEERITLASQGIPKTSK-VGFEIFDTK 121

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
           + FG T F Q I  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+ASVM+
Sbjct: 122 D-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180

Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232
           +              I++L+AAAVP L + +V +++  G+ +   +     + +  + L 
Sbjct: 181 KLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLR 240

Query: 233 IVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
             Q  ++ +E  I   LA  +G  N   + V AE +   ++  +  +DP++ V     L 
Sbjct: 241 YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE 300

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+         + 
Sbjct: 301 EKKEGAPKKQVGGVPGVVSNIGPVQGLKD--NKEPEKYEKSQNTTNYEVGKTISEIKGEF 358

Query: 352 YKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
             L RL+ AVVV+      L +       +   D  L +IN +V  A G N  RGD + +
Sbjct: 359 GTLVRLNAAVVVDGKYKIALEDGANALEYEPLSDESLKKINALVKQAIGYNQNRGDDVAV 418

Query: 409 TSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463
           ++ +F     + ++ T+    M    +   +    + +++  +++       +     R+
Sbjct: 419 SNFEFNPMAPMIDNATLSEKIMHKTQKILGSFTPLIKYILVFIVLFIFYKKVIVPFSERM 478

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRIN 520
             +   +  EV                 G +     D + L++S  +       +  +I 
Sbjct: 479 LEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNASFSEEEVRYEIILEKIR 538

Query: 521 SYVSKQSD 528
             + ++ D
Sbjct: 539 GTLKERPD 546


>gi|167623379|ref|YP_001673673.1| flagellar MS-ring protein [Shewanella halifaxensis HAW-EB4]
 gi|167353401|gb|ABZ76014.1| flagellar M-ring protein FliF [Shewanella halifaxensis HAW-EB4]
          Length = 566

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 108/529 (20%), Positives = 220/529 (41%), Gaps = 29/529 (5%)

Query: 37  MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIH 96
           +    +   P Y  L  ++  +++ ++   L    + + I   G  + VP       R+ 
Sbjct: 53  VFVMIWAQEPEYRPL-GQMSTAEMVQVLDVLDNNQVKYEIQ--GDVVKVPEDKFQDVRML 109

Query: 97  LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHI 156
           L+ +GL ++ +N+  +  +K + FG++  M++     + E  +AR I+ +  +  A+V +
Sbjct: 110 LSREGLDNTDANN--DFLNKDSGFGVSQRMEQARLKHSQEQNLARIIEELKSVTRAKVIL 167

Query: 157 VMPDMGSFRKIGARPTASVMIRAIN-PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
            +P    F +  ++P+A+V++         +  ++I  +VA+AV NL+   VTV D+ G+
Sbjct: 168 ALPKENVFARNRSKPSATVVVSTRRSGLSQEEVDSIVDIVASAVHNLEPNKVTVTDANGR 227

Query: 216 LLTAN--EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI 273
           LL +   +    I  + L IVQ  + E    +   L   LG +NF S V   ++    + 
Sbjct: 228 LLNSGTQDGSSAIARRELEIVQQKESEYRNKVESILMPILGPENFTSQVDVSMDFTAVEQ 287

Query: 274 REIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN----- 328
               Y+PD    RS  + ++     TS          N P ++        + E      
Sbjct: 288 TAKRYNPDLPSLRSEMVVENNSNGGTS--GGIPGALSNQPPMASDIPQEVNAEETVTRNS 345

Query: 329 -TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT-EVLGRSADQGKIDSYLA 386
            +  KE   N+E++T    T      L R+S++V V+         G      + +  LA
Sbjct: 346 GSTHKEATRNFELDTTISHTRQQIGTLRRVSVSVAVDFKNAPMAEDGSVNRVPRTEQELA 405

Query: 387 EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFL 446
            I +++  A G N++RGD I + ++ F++  +  +   ++       R    V+ ALV L
Sbjct: 406 NIRRLLEGAVGFNTQRGDVIEVVTVPFMDQLIEAAPAPELWEQPWFWRVLRLVLGALVIL 465

Query: 447 VGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLM--PNDNIALDSS 504
           V  L V    L  L    +++   + + GG+ +       +A T G++  P    +    
Sbjct: 466 VLILAVVRPMLKKLVYPDSVNMPDEPQRGGE-LAEIEDQYAADTLGMLQRPEAEYSYADD 524

Query: 505 NQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
              +  +       I +         +  ++    E   ++++ W   +
Sbjct: 525 GSILIPNLHKDDDMIKA---------IRALVANEPELSTQVVKNWLLED 564


>gi|91223211|ref|ZP_01258477.1| flagellar M-ring protein [Vibrio alginolyticus 12G01]
 gi|91192024|gb|EAS78287.1| flagellar M-ring protein [Vibrio alginolyticus 12G01]
          Length = 570

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 121/557 (21%), Positives = 233/557 (41%), Gaps = 31/557 (5%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           +L Q + S       R L+L++V+   +   +    + +S  +  LY + E  D+  I  
Sbjct: 21  KLKQIWSSS-----QRNLVLSAVLAAIVAAIIVVALWSSSQSFRPLYSQQERFDIGEIVS 75

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L    + +R+ +    + VP   V K R+ LA++G+  +   +G +   + +S G + F
Sbjct: 76  VLESEGVSYRMQEQNGQVLVPEGEVAKVRMLLASKGV-KAKLPTGLDSLKEDSSLGTSQF 134

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAINPSV 184
           M+       LEGE+ RTI S++ +  ARVH+ +P    F +  +  P+ASVM+       
Sbjct: 135 METARYRHGLEGELVRTIMSLNSVANARVHLAIPRQTLFVRQNSENPSASVMLELKPGED 194

Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIVQAIQH 239
            K    EAI +LV  +V  +    V+V+D  G+LL+A+           K L   ++++ 
Sbjct: 195 LKPEQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLSADVASAEAGKVNAKYLEYQKSVEK 254

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           +I       L   +G  NFR  V A+L+    +  + + D ++ V R+     +    + 
Sbjct: 255 QIIQRAADMLTPIVGPSNFRVQVAADLDFSQVEETQEILD-NAPVVRNEHTIHNNSVDQI 313

Query: 300 SQPESAVTVEQNMPHVSD-RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
           +          N P V+   +V    S     + E    Y + +    T +   ++E+LS
Sbjct: 314 AL--GVPGSLSNQPPVTGSGEVETSDSQNTNARSEVNRQYAVGSSVRRTQYQQGQIEKLS 371

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           ++V++N     + +         ++   +I+ ++  A GI++ RGD++++ S +F   ++
Sbjct: 372 VSVLLNSKASPDGV------AWSEADKEQISNMIMDAVGISATRGDSLSLMSFNFTPIEI 425

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
                +       + +    VI  L+     L + F  L  L       D    E+    
Sbjct: 426 DAPPALPWWQDPTVQQPIRYVIGGLL----GLAMIFFVLRPLIMHLTGVDKPVPELNFAE 481

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL----LHM 534
               P   +  T     ++ +     ++   S S  L    +      S L +    L +
Sbjct: 482 PQEEPDYENLQTREEREHEEVLDRRLSEKGISASSGLDVNSDMLPPAGSPLEIQLKHLQL 541

Query: 535 IE-INEERFAKILRKWA 550
           I     ER A+IL++W 
Sbjct: 542 IANEEPERVAEILKQWV 558


>gi|317181691|dbj|BAJ59475.1| flagellar MS-ring protein [Helicobacter pylori F57]
          Length = 567

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 123/548 (22%), Positives = 238/548 (43%), Gaps = 29/548 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEV 57
           +L +++ FF       + +I ++A+ +L+  +L     +      Y       L+ +L+ 
Sbjct: 6   LLQRIVDFFIKLNK--KQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFERLDS 63

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
           SD   I   L +  I ++I  +  +I +P   V + RI LA+QG+P +S   G+E+FD  
Sbjct: 64  SDNALILQHLQQNQIPYKILKD-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFDTK 121

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
           + FG T F Q I  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+ASVM+
Sbjct: 122 D-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180

Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232
           +              I++L+AAAVP L   +V +++  G+ +   +     + +  + L 
Sbjct: 181 KLKPDMKLSPTQILGIKNLIAAAVPKLTTENVKIVNENGESIGEGDILENSKELALEQLR 240

Query: 233 IVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
             Q  ++ +E  I   LA  +G  N   + V AE +   ++  +  +DP++ V     L 
Sbjct: 241 YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE 300

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+         + 
Sbjct: 301 EKKEGTPKKQVGGVPGVVSNIGPVQGLKD--NKEPEKYEKSQNTTNYEVGKTISEIKGEF 358

Query: 352 YKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
             L RL+ AVVV+      L +       +   D  L +IN +V  A G N  RGD + +
Sbjct: 359 GTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDDVAV 418

Query: 409 TSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463
           ++ +F     + ++ T+    M    +   +    + +++  +++       +     R+
Sbjct: 419 SNFEFNPMAPMLDNATLSEKIMHKTQKVLGSFTPLIKYILAFIVLFIFYKKVIVPFSERM 478

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRIN 520
             +   +  EV                 G +     D + L+++  +       +  +I 
Sbjct: 479 LEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIVLEKIR 538

Query: 521 SYVSKQSD 528
             + ++ D
Sbjct: 539 GTLKERPD 546


>gi|210134543|ref|YP_002300982.1| flagellar MS-ring protein [Helicobacter pylori P12]
 gi|210132511|gb|ACJ07502.1| flagellar basal-body M-ring protein [Helicobacter pylori P12]
          Length = 567

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 126/580 (21%), Positives = 245/580 (42%), Gaps = 41/580 (7%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEV 57
           +L +++ FF       + +I ++A+ +L+  +L     +      Y       L+  L+ 
Sbjct: 6   LLQRIVDFFIKLNK--KQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFEGLDS 63

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
           SD   I   L +  I +++S +  +I +P   V + RI LA+QG+P +S   G+E+FD  
Sbjct: 64  SDNALILQHLQQNQIPYKVSRD-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFDTK 121

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
           + FG T F Q I  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+ASVM+
Sbjct: 122 D-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180

Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232
           +              I++L+AAAVP L + +V +++  G+ +   +     + +  + L 
Sbjct: 181 KLNPDMKLSPTQILGIKNLIAAAVPKLTIDNVKIVNENGESIGEGDILENSKELALEQLH 240

Query: 233 IVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
             Q  ++ +E  I   LA  +G  N   + V AE +   ++  +  +DP++ V     L 
Sbjct: 241 YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE 300

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+         + 
Sbjct: 301 EKKEGAPKKQVGGVPGVVSNIGPVQGLKD--NKEPEKYEKSQNTTNYEVGKTISEIKGEF 358

Query: 352 YKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
             L RL+ AVVV+      L +       +   D  L +IN +V  A G N  RGD + +
Sbjct: 359 GTLVRLNAAVVVDGKYKIALKDGANALEYEPLSDESLKKINALVKQAIGYNQNRGDDVAV 418

Query: 409 TSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463
           ++ +F     + ++ T+    M    +   +    + +++  +++       +     R+
Sbjct: 419 SNFEFNPMVPVIDNATLSEKIMHKTQKILGSFTPLIKYVLVFIVLFIFYKKVIVPFSERM 478

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRIN 520
             +   +  EV                 G +     D + L+++  +       +  +I 
Sbjct: 479 LEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIILEKIR 538

Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560
             +                +  A + +   + EI    T+
Sbjct: 539 GTLK------------ERPDEIAMLFKLLIKDEISSDSTK 566


>gi|317010623|gb|ADU84370.1| flagellar MS-ring protein [Helicobacter pylori SouthAfrica7]
          Length = 567

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 122/548 (22%), Positives = 241/548 (43%), Gaps = 29/548 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEV 57
           +L +++ FF       + +I ++A+ +L+  ++     +     +Y       L+ +L+ 
Sbjct: 6   LLQRIVDFFIKLNK--KQKIALIAAGVLITALIVFLLIYPFKEKNYVQGGYGVLFERLDP 63

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
           SD   I   L +  I +++S +  +I +P   V + RI LA+QG+P +S   G+E+FD  
Sbjct: 64  SDNALILQHLQQNQIPYKVSKD-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFDTK 121

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
           + FG T F Q I  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+ASVM+
Sbjct: 122 D-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180

Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232
           +              I++L+AAAVP L + +V +++  G+ +   +     + +  + L 
Sbjct: 181 KIKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLH 240

Query: 233 IVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
             Q  ++ +E  I   LA  +G  N   + V AE +   ++  +  +DP++ V     L 
Sbjct: 241 YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE 300

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+         + 
Sbjct: 301 EKKEGTPKKQIGGVPGVVSNIGPVQGLKDNKEQ--EKYEKSQNTTNYEVGKTISEIKGEF 358

Query: 352 YKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
             L RL+ AVVV+      L +       +   D  L +IN +V  A G N  RGD + +
Sbjct: 359 GTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLQKINALVKQAIGYNQNRGDDVAV 418

Query: 409 TSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463
           ++ +F     + ++ T+    M    +   +    + +++  +++       +     R+
Sbjct: 419 SNFEFNPMAPMIDNATLSEKIMRKTQKVLGSFTPLIKYVLVFIVLFIFYKKVIVPFSERM 478

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRIN 520
             +   +  EV                 G +     D + L+++  +       +  +I 
Sbjct: 479 LEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIILEKIR 538

Query: 521 SYVSKQSD 528
             + ++ D
Sbjct: 539 GTLKERPD 546


>gi|261837785|gb|ACX97551.1| flagellar basal-body M-ring protein [Helicobacter pylori 51]
          Length = 567

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 126/580 (21%), Positives = 244/580 (42%), Gaps = 41/580 (7%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEV 57
           +L +++ FF       + +I ++A+ +L+  +L     +      Y       L+ +L+ 
Sbjct: 6   LLQRIVDFFIKLNK--KQKIALIAAGVLITTLLVFLLLYPFKEKDYAQGGYGVLFERLDS 63

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
           SD   I   L +  I ++I  +  +I +P   V + RI LA+QG+P +S   G+E+FD  
Sbjct: 64  SDNALILQHLQQNQIPYKILKD-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFDTK 121

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
           + FG T F Q I  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+ASVM+
Sbjct: 122 D-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180

Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232
           +              I++L+AAAVP L   +V +++  G+ +   +     + +  + L 
Sbjct: 181 KLKPDMKLSPTQILGIKNLIAAAVPKLTTENVKIVNENGESIGEGDILENSKELALEQLR 240

Query: 233 IVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
             Q  ++ +E  I   LA  +G  N   + V AE +   ++  +  +DP++ V     L 
Sbjct: 241 YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE 300

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+         + 
Sbjct: 301 EKKEGAPKKQVGGVPGVVSNIGPVQGLKD--NKEPEKYEKSQNTTNYEVGKTISEIKGEF 358

Query: 352 YKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
             L RL+ AVVV+      L +       +   D  L +IN +V  A G N  RGD + +
Sbjct: 359 GTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDDVAV 418

Query: 409 TSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463
           ++ +F     + ++ T+    M    +   +    + +++  +++       +     R+
Sbjct: 419 SNFEFNPMAPMLDNATLSEKIMHKTQKVLGSFTPLIKYILVFIVLFIFYKKVIVPFSERM 478

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRIN 520
             +   +  EV                 G +     D + L+++  +       +  +I 
Sbjct: 479 LEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIVLEKIR 538

Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560
             +                +  A + +   + EI    T+
Sbjct: 539 GTLK------------ERPDEIAMLFKLLIKDEISSDSTK 566


>gi|315586339|gb|ADU40720.1| flagellar M-ring protein FliF [Helicobacter pylori 35A]
          Length = 567

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 124/548 (22%), Positives = 238/548 (43%), Gaps = 29/548 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEV 57
           +L +++ FF       + +I ++A+ +L+  +L     +      Y       L+ +L+ 
Sbjct: 6   LLQRIVDFFIKLNK--KQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFERLDS 63

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
           SD   I   L +  I ++I  +  +I +P   V + RI LA+QG+P +S   G+E+FD  
Sbjct: 64  SDNALILQHLQQNQIPYKILKD-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFDTK 121

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
           + FG T F Q I  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+ASVM+
Sbjct: 122 D-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180

Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232
           +              I++L+AAAVP L   +V +++  G+ +   +     + +  + L 
Sbjct: 181 KLKPDMKLSPTQILGIKNLIAAAVPKLTTENVKIVNENGESIGEGDILENSKELALEQLR 240

Query: 233 IVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
             Q  ++ +E  I   LA  +G  N   + V AE +   ++  +  +DP++ V     L 
Sbjct: 241 YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE 300

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+         + 
Sbjct: 301 EKKEGAPKKQVGGVPGVVSNIGPVQGLKD--NKEPEKYEKSQNTTNYEVGKTISEIKGEF 358

Query: 352 YKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
             L RL+ AVVV+      L +       +   D  L +IN +V  A G N  RGD + +
Sbjct: 359 GTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDDVAV 418

Query: 409 TSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463
           ++ +F     + N+ T+    M    +   +    + +++  +++       +     R+
Sbjct: 419 SNFEFNPMAPMLNNATLSEKIMHKTQKVLGSFTPLIKYILVFIVLFIFYKKVIVPFSERM 478

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRIN 520
             +   +  EV                 G +     D + L+++  +       +  +I 
Sbjct: 479 LEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIVLEKIR 538

Query: 521 SYVSKQSD 528
             + ++ D
Sbjct: 539 GTLKERPD 546


>gi|160876177|ref|YP_001555493.1| flagellar MS-ring protein [Shewanella baltica OS195]
 gi|160861699|gb|ABX50233.1| flagellar M-ring protein FliF [Shewanella baltica OS195]
 gi|315268373|gb|ADT95226.1| flagellar M-ring protein FliF [Shewanella baltica OS678]
          Length = 560

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 111/551 (20%), Positives = 221/551 (40%), Gaps = 28/551 (5%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
           +   +   R + +   + + + L +    +   P Y  L  K+E  ++ ++   L +  +
Sbjct: 25  NLGGVDMMRQVTMILALAICLALAVFVMLWAQEPEYRPL-GKMETQEMVQVLDVLDKNKV 83

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
            ++I  +   I VP     + ++ L+  G+   S  +  +  ++ + FG++  M++    
Sbjct: 84  KYQIDVD--VIKVPEDKYQEVKMMLSRAGV--DSPAASQDFLNQDSGFGVSQRMEQARLK 139

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV-YKSAEAI 191
            + E  +AR I+ +  +  A+V + +P    F +  ++P+A+V+I      +     +AI
Sbjct: 140 HSQEENLARAIEQLQSVSRAKVILALPKENVFARNASKPSATVVINTRRGGLGQGEVDAI 199

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEMNINKAL 249
             +VA+AV  L+   VTV DS G+LL +   +       + L +VQ  + E    I   L
Sbjct: 200 VDIVASAVQGLEPSRVTVTDSNGRLLNSGSQDGASATARRELELVQQKEAEYRTKIESIL 259

Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309
              LG DNF S V   ++    +     Y+PD    RS    ++     +S         
Sbjct: 260 VPILGPDNFTSQVDVSMDFTAVEQTSKRYNPDLPSLRSEMTVENNTTGGSS--GGIPGAL 317

Query: 310 QNMPHV-----SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
            N P +      D              +E   N+E++T    T      + R+S++V V+
Sbjct: 318 SNQPPMESNIPQDATKATESVTAGNSHREATRNFELDTTISHTRQQVGAVRRISVSVAVD 377

Query: 365 -KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
            K       G+ A   + +  L  I +++  A G +S+RGD + + ++ F++  + +   
Sbjct: 378 FKPGAAGENGQVARVARTEQELTNIRRLLEGAVGFSSQRGDVLEVVTVPFMDQLVEDLPA 437

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG--GKSILS 481
           +++       R     I ALV LV  L V       L+RL   D     E G  G  +  
Sbjct: 438 LELWEQPWFWRAIKLGIGALVILVLILAV---VRPMLKRLIYPDSVSMPEDGRLGNELAE 494

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
                +A T G+       L++   +            N +        +  ++    E 
Sbjct: 495 IEDQYAADTLGM-------LNTQEAEYSYADDGSIHIPNLHKDDDMIKAIRALVANEPEL 547

Query: 542 FAKILRKWARS 552
             ++++ W + 
Sbjct: 548 STQVVKNWLQD 558


>gi|167626144|ref|YP_001676438.1| flagellar MS-ring protein [Shewanella halifaxensis HAW-EB4]
 gi|167356166|gb|ABZ78779.1| flagellar M-ring protein FliF [Shewanella halifaxensis HAW-EB4]
          Length = 572

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 121/575 (21%), Positives = 228/575 (39%), Gaps = 44/575 (7%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L+ L Q +   +   R       +++ +     +    +     Y  LY   E  + + I
Sbjct: 22  LNSLKQKWHQFSRGDRH--AATLAILAIVAACVIVLMLWSTGQGYSPLYGNQENVETSHI 79

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    I +R+      I VP   VG AR+ LAA+G+  +   SG E  D  ++ G +
Sbjct: 80  IEVLEAEGISYRLDPTSGLILVPEDRVGNARMVLAARGV-KAKVPSGMESLDS-SAIGTS 137

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAINP 182
            FM++     +LEGE++RTI ++  +  ARVH+ +P    F +     P+ASVM+     
Sbjct: 138 QFMEQAKYRYSLEGELSRTIMALKSVKTARVHLAIPKKTLFIRQQPELPSASVMLDLYAG 197

Query: 183 S--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQA 236
                +   +I +LVA +V  +    V ++D  G  L+    AN+       K L   Q 
Sbjct: 198 QHLQPEQITSIANLVAGSVTGMTPERVQIVDQEGNHLSSEINANQDLTQARDKQLQYTQE 257

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           ++  +    +  L   LG DNF+  V A +N +  +      DP + V    +  +   +
Sbjct: 258 LEQSLINRASSMLQPILGQDNFQVQVAALVNFNQVEETRESLDPQTVV---SQEKQSTNQ 314

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
           +             N P  +D       S  N   ++E   +E+      T +   +LE 
Sbjct: 315 TSGDMALGIPGALSNQPPTADAATNNSTSNLN---QQESRQFEVGRSVKHTRYQQMQLEN 371

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           LSI+V++N          + + G     L +++ +V  A G ++ RGD  +I+S +F   
Sbjct: 372 LSISVLLNNQA-------AGETGWTQPQLDQMSTMVQDAIGYSAARGDQFSISSFNFAPV 424

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL-----HNIDDAKK 471
           ++     +             +    L + +G +L   +    LR L       ++   K
Sbjct: 425 KIAEFEPLPWW-------QGESYQAYLRYFIGAILGLGMIFFVLRPLVQHLTRTVEHNIK 477

Query: 472 GEVGGKSILSPPPISSAV-----TTGLMPNDNIALDSSN-QDIFSHSRNLQSRINSYVSK 525
             +     L PP  ++             ++ +AL+++N    ++ + NL +  +    +
Sbjct: 478 DTLPSTQPLMPPAEAATAHLSQDAAQEAADNLVALNNANINSNWTSNLNLPAPGSPLTVQ 537

Query: 526 QSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560
              L L  +      R A+++  W      ++ T 
Sbjct: 538 MEHLSL--LANQEPARVAEVISHWISDRDSEQNTH 570


>gi|217033359|ref|ZP_03438790.1| hypothetical protein HP9810_9g112 [Helicobacter pylori 98-10]
 gi|216944300|gb|EEC23725.1| hypothetical protein HP9810_9g112 [Helicobacter pylori 98-10]
 gi|317177162|dbj|BAJ54951.1| flagellar MS-ring protein [Helicobacter pylori F16]
 gi|317179256|dbj|BAJ57044.1| flagellar MS-ring protein [Helicobacter pylori F30]
 gi|332673195|gb|AEE70012.1| flagellar M-ring protein FliF [Helicobacter pylori 83]
          Length = 567

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 123/548 (22%), Positives = 238/548 (43%), Gaps = 29/548 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEV 57
           +L +++ FF       + +I ++A+ +L+  +L     +      Y       L+ +L+ 
Sbjct: 6   LLQRIVDFFIKLNK--KQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFERLDS 63

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
           SD   I   L +  I ++I  +  +I +P   V + RI LA+QG+P +S   G+E+FD  
Sbjct: 64  SDNALILQHLQQNQIPYKILKD-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFDTK 121

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
           + FG T F Q I  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+ASVM+
Sbjct: 122 D-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180

Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232
           +              I++L+AAAVP L   +V +++  G+ +   +     + +  + L 
Sbjct: 181 KLKPDMKLSPTQILGIKNLIAAAVPKLTTENVKIVNENGESIGEGDILENSKELALEQLR 240

Query: 233 IVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
             Q  ++ +E  I   LA  +G  N   + V AE +   ++  +  +DP++ V     L 
Sbjct: 241 YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE 300

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+         + 
Sbjct: 301 EKKEGAPKKQVGGVPGVVSNIGPVQGLKD--NKEPEKYEKSQNTTNYEVGKTISEIKGEF 358

Query: 352 YKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
             L RL+ AVVV+      L +       +   D  L +IN +V  A G N  RGD + +
Sbjct: 359 GTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDDVAV 418

Query: 409 TSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463
           ++ +F     + ++ T+    M    +   +    + +++  +++       +     R+
Sbjct: 419 SNFEFNPMAPMLDNATLSEKIMHKTQKVLGSFTPLIKYILVFIVLFIFYKKVIVPFSERM 478

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRIN 520
             +   +  EV                 G +     D + L+++  +       +  +I 
Sbjct: 479 LEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIVLEKIR 538

Query: 521 SYVSKQSD 528
             + ++ D
Sbjct: 539 GTLKERPD 546


>gi|269965409|ref|ZP_06179529.1| flagellar M-ring protein [Vibrio alginolyticus 40B]
 gi|269830055|gb|EEZ84284.1| flagellar M-ring protein [Vibrio alginolyticus 40B]
          Length = 583

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 121/557 (21%), Positives = 233/557 (41%), Gaps = 31/557 (5%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           +L Q + S       R L+L++V+   +   +    + +S  +  LY + E  D+  I  
Sbjct: 34  KLKQIWSSS-----QRNLVLSAVLAAIVAAIIVVALWSSSQSFRPLYSQQERFDIGEIVS 88

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L    + +R+ +    + VP   V K R+ LA++G+  +   +G +   + +S G + F
Sbjct: 89  VLESEGVSYRMQEQNGQVLVPEGEVAKVRMLLASKGV-KAKLPTGLDSLKEDSSLGTSQF 147

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAINPSV 184
           M+       LEGE+ RTI S++ +  ARVH+ +P    F +  +  P+ASVM+       
Sbjct: 148 METARYRHGLEGELVRTIMSLNSVANARVHLAIPRQTLFVRQNSENPSASVMLELKPGED 207

Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIVQAIQH 239
            K    EAI +LV  +V  +    V+V+D  G+LL+A+           K L   ++++ 
Sbjct: 208 LKPEQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLSADVASAEAGKVNAKYLEYQKSVEK 267

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           +I       L   +G  NFR  V A+L+    +  + + D ++ V R+     +    + 
Sbjct: 268 QIIQRAADMLTPIVGPSNFRVQVAADLDFSQVEETQEILD-NAPVVRNEHTIHNNSVDQI 326

Query: 300 SQPESAVTVEQNMPHVSD-RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
           +          N P V+   +V    S     + E    Y + +    T +   ++E+LS
Sbjct: 327 AL--GVPGSLSNQPPVTGSGEVETNDSQNTNARSEVNRQYAVGSSVRRTQYQQGQIEKLS 384

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           ++V++N     + +         ++   +I+ ++  A GI++ RGD++++ S +F   ++
Sbjct: 385 VSVLLNSKASPDGV------AWSEADKEQISNMIMDAVGISATRGDSLSLMSFNFTPIEI 438

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
                +       + +    VI  L+     L + F  L  L       D    E+    
Sbjct: 439 DAPPALPWWQDPTVQQPIRYVIGGLL----GLAMIFFVLRPLIMHLTGVDKPVPELNFAE 494

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL----LHM 534
               P   +  T     ++ +     ++   S S  L    +      S L +    L +
Sbjct: 495 PQEEPDYENLQTREEREHEEVLDRRLSEKGISASSGLDVNSDMLPPAGSPLEIQLKHLQL 554

Query: 535 IE-INEERFAKILRKWA 550
           I     ER A+IL++W 
Sbjct: 555 IANEEPERVAEILKQWV 571


>gi|209545569|ref|YP_002277798.1| flagellar MS-ring protein [Gluconacetobacter diazotrophicus PAl 5]
 gi|209533246|gb|ACI53183.1| flagellar M-ring protein FliF [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 547

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 129/551 (23%), Positives = 232/551 (42%), Gaps = 16/551 (2%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +         LGR ++  L     V + +     F         LY  +++ +   +   
Sbjct: 1   MQNILAGLKGLGRKQLAALGGAAAVLLTILGFLVFQGGGQTMALLYGDVDLGEAAEMIDD 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L++A+I    S +G+SI VP   V  AR+ LA  GLP S    GYELFDK  +   T F 
Sbjct: 61  LAKAHISSTTSPDGTSIYVPRDKVASARLLLAKDGLP-SGGAVGYELFDKSGTLTSTQFE 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS--V 184
           Q I   RA+EGE+ R+I+ + G+   RVH+V+P    F    +   ASV++         
Sbjct: 120 QTINETRAMEGELERSIRLVHGVRNVRVHLVLPHRDLFSTQTSPSQASVVLDIGRAGRMA 179

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL---SIVQAIQHEI 241
               +AI++LVAAAVP L   +++++D+ G +L       +  G+      +  A +  +
Sbjct: 180 PDGIQAIQNLVAAAVPGLRPQNISIVDTRGDVLVKPGDPDSAAGQESTIEKLQHAEEQRL 239

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
             ++   L   LG  + R+     +  D     +  YDP+ +V RS + + D   +  + 
Sbjct: 240 AQDVEDMLVPTLGAGHVRARAAVTMATDEIHETDESYDPNQQVLRSEQTTSDKSVNTEAS 299

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
           P    TV  N+P+ +  +     S +  D++E+ +NYEI  +    +    ++ R+S+AV
Sbjct: 300 PN--TTVSNNLPNANANQDNKTGSSD--DREEDTNNYEIGKRVRVISQTRPRVSRISLAV 355

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           +V+     +  G+   Q    + +  I  +   A G +  RGD + + SM F+ +     
Sbjct: 356 MVDGMVTRDKNGKDVWQPLDTAEIQNITTLAKTAIGYDQSRGDEVNVVSMRFMPDGGLGF 415

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
            T   S +         +   ++ ++  L   F+G+  + R   I+       G      
Sbjct: 416 PTSTGSVLS--RDTLIYIAEWVIPIILALGAIFIGIRPMLRRGAINLPALA-AGHLQEGL 472

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
           P     A   G + N+       +  I S        I   +  ++  ++   IE + + 
Sbjct: 473 PGIAGHA---GRIGNEMTGALIPSAHIGSDGTVSIDGIEGKMRAEAIAKVASRIEESTQE 529

Query: 542 FAKILRKWARS 552
              I+R W   
Sbjct: 530 SVLIIRNWLAE 540


>gi|162147460|ref|YP_001601921.1| flagellar MS-ring protein [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786037|emb|CAP55619.1| putative flagellar M-ring protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 547

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 129/551 (23%), Positives = 233/551 (42%), Gaps = 16/551 (2%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +     S   LGR ++  L     V + +     F         LY  +++ +   +   
Sbjct: 1   MQNILASLKGLGRKQLAALGGAAAVLLTILGFLVFQGGGQTMALLYGDVDLGEAAEMIDD 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L++A+I    S +G+SI VP   V  AR+ LA  GLP S    GYELFDK  +   T F 
Sbjct: 61  LAKAHISSTTSPDGTSIYVPRDKVASARLLLAKDGLP-SGGAVGYELFDKSGTLTSTQFE 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS--V 184
           Q I   RA+EGE+ R+I+ + G+   RVH+V+P    F    +   ASV++         
Sbjct: 120 QTINETRAMEGELERSIRLVHGVRNVRVHLVLPHRDLFSTQTSPSQASVVLDIGRAGRMA 179

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL---SIVQAIQHEI 241
               +AI++LVAAAVP L   +++++D+ G +L       +  G+      +  A +  +
Sbjct: 180 PDGIQAIQNLVAAAVPGLRPQNISIVDTRGDVLVKPGDPDSAAGQESTIEKLQHAEEQRL 239

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
             ++   L   LG  + R+     +  D     +  YDP+ +V RS + + D   +  + 
Sbjct: 240 AQDVEDMLVPTLGAGHVRARAAVTMATDEIHETDESYDPNQQVLRSEQTTSDKSVNTEAS 299

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
           P    TV  N+P+ +  +     S +  D++E+ +NYEI  +    +    ++ R+S+AV
Sbjct: 300 PN--TTVSNNLPNANANQDNKTGSSD--DREEDTNNYEIGKRVRVISQTRPRVSRISLAV 355

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           +V+     +  G+   Q    + +  I  +   A G +  RGD + + SM F+ +     
Sbjct: 356 MVDGMVTRDKNGKDVWQPLDTAEIQNITTLAKTAIGYDQSRGDEVNVVSMRFMPDGGLGF 415

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
            T   S +         +   ++ ++  L   F+G+  + R   I+         +  L 
Sbjct: 416 PTSTGSVLS--RDTLIYIAEWVIPIILALGAIFIGIRPMLRRGAINLPALAAGHLQEGLP 473

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
                 A   G + N+       +  I S        I   +  ++  ++   IE + + 
Sbjct: 474 GI----AGHAGRIGNEMTGALIPSAHIGSDGTVSIDGIEGKMRAEAIAKVASRIEESTQE 529

Query: 542 FAKILRKWARS 552
              I+R W   
Sbjct: 530 SVLIIRNWLAE 540


>gi|307637039|gb|ADN79489.1| flagellar M-ring protein [Helicobacter pylori 908]
          Length = 567

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 123/548 (22%), Positives = 237/548 (43%), Gaps = 29/548 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEV 57
           +L +++ FF       + +I ++A+ +L+  +L     +      Y       L+ +L+ 
Sbjct: 6   LLQRIVDFFIKLNK--KQKIALIAAEVLITALLVFLLLYPFKEKDYAQGGYGVLFERLDS 63

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
           SD   I   L +  I +++  +  +I VP   V + RI LA+QG+P +S   G+E+FD  
Sbjct: 64  SDNALILQHLQQNQIPYKVLKD-DTILVPKDKVYEERITLASQGIPKTSK-VGFEIFDTK 121

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
           + FG T F Q I  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+ASVM+
Sbjct: 122 D-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180

Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232
           +              I++L+AAAVP L + +V +++  G+ +   +     + +  + L 
Sbjct: 181 KLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLR 240

Query: 233 IVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
             Q  ++ +E  I   LA  +G  N   + V AE +   ++  +  +DP++ V     L 
Sbjct: 241 YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE 300

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+         + 
Sbjct: 301 EKKEGAPKKQVGGVPGVVSNIGPVQGLKD--NKEPEKYEKSQNTTNYEVGKTISEIKGEF 358

Query: 352 YKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
             L RL+ AVVV+        +       +   D  L +IN +V  A G N  RGD + +
Sbjct: 359 GTLVRLNAAVVVDGKYKIAFKDGANALEYEPLSDESLKKINALVKQAIGYNQNRGDDVAV 418

Query: 409 TSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463
           ++ +F     + ++ T     M    +   +    + +++  +++       +     R+
Sbjct: 419 SNFEFNPMAPMIDNATFSEKIMHKTQKILGSFTPLIKYILVFIVLFIFYKKVIVPFSERM 478

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRIN 520
             +   +  EV                 G +     D + L++S  +       +  +I 
Sbjct: 479 LEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNASFSEEEVRYEIILEKIR 538

Query: 521 SYVSKQSD 528
             + ++ D
Sbjct: 539 GTLKERPD 546


>gi|317013789|gb|ADU81225.1| flagellar MS-ring protein [Helicobacter pylori Gambia94/24]
          Length = 567

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 123/548 (22%), Positives = 239/548 (43%), Gaps = 29/548 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEV 57
           +L +++ FF       + +I ++A+ +L+  +L     +      Y       L+ +L+ 
Sbjct: 6   LLQRIVDFFIKLNK--KQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFERLDS 63

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
           SD   I   L +  I +++  +  +I +P   V + RI LA+QG+P +S   G+E+FD  
Sbjct: 64  SDNALILQHLQQNQIPYKVLKD-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFDTK 121

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
           + FG T F Q I  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+ASVM+
Sbjct: 122 D-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180

Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232
           +              I++L+AAAVP L + +V +++  G+ +   +     + +  + L 
Sbjct: 181 KLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLR 240

Query: 233 IVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
             Q  ++ +E  I   LA  +G  N   + V AE +   ++  +  +DP++ V     L 
Sbjct: 241 YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE 300

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+         + 
Sbjct: 301 EKKEGASKKQVGGVPGVVSNIGPVQGLKD--NKEPEKYEKSQNTTNYEVGKTISEIKGEF 358

Query: 352 YKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
             L RL+ AVVV+      L +       +   D  L +IN +V  A G N  RGD + +
Sbjct: 359 GTLVRLNAAVVVDGKYKIALKDGANALEYEPLSDESLKKINALVKQAIGYNQNRGDDVAV 418

Query: 409 TSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463
           ++ +F     + ++ T+    M    +   +    + +++  +++       +     R+
Sbjct: 419 SNFEFNPMAPMIDNATLSEKIMHKTQKILGSFTPLIKYILVFIVLFIFYKKVIVPFSERM 478

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRIN 520
             +   +  EV                 G +     D + L++S  +       +  +I 
Sbjct: 479 LEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNASFSEEEVRYEIILEKIR 538

Query: 521 SYVSKQSD 528
             + ++ D
Sbjct: 539 GTLKERPD 546


>gi|304392498|ref|ZP_07374438.1| flagellar M-ring protein FliF [Ahrensia sp. R2A130]
 gi|303295128|gb|EFL89488.1| flagellar M-ring protein FliF [Ahrensia sp. R2A130]
          Length = 535

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 182/549 (33%), Positives = 295/549 (53%), Gaps = 41/549 (7%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
           + + +   LG  R+ I+A   +  +     + +F+  P ++ LYV L   D+NRI  ALS
Sbjct: 18  RIWANLLQLGGRRLAIMAIAAMATMGTVGLSAWFLAQPTFETLYVGLARDDINRIGPALS 77

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
           EA I + +S +G+S+ V +    +AR  LA +GLP SS  SGYELFD + S GLTSFMQE
Sbjct: 78  EAGIGYDVSSDGTSVLVQAGQAARARSILAERGLPRSSG-SGYELFDNLGSLGLTSFMQE 136

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA 188
           +TRVRALEGEIAR+++SI GI  ARVHIV PD  SF     + +ASV+I++    + + A
Sbjct: 137 VTRVRALEGEIARSVRSIEGIQGARVHIVQPDRSSFSARNRQASASVLIQSNGRDIDRVA 196

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEIEMNINK 247
           +A+RHLVAAAVP L +G+VTVLDS+G++L + +E   +    +L + + +++ +  NI +
Sbjct: 197 KAVRHLVAAAVPQLAVGNVTVLDSSGQVLASGDEPASSTADGALGMQRLVENRLSENIAR 256

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVT 307
            L   LG  NFR AV A L+ D +   E +YDP+S+VERSI++ +      +SQ     T
Sbjct: 257 VLTPQLGASNFRVAVHAVLDTDQRTTSETIYDPESRVERSIKVVRTQDTDTSSQGGQTTT 316

Query: 308 VEQNMPHVSDRKVP-LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
           VEQ++P     +    P S   ++++EE +NYE+++K I++  + Y + +L+ +VVVN  
Sbjct: 317 VEQDIPEEQPAQANAGPSSNRESERREETTNYEMSSKRISSVRNGYSVSKLTASVVVN-- 374

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
                   SA   +    L  +     AA G+++ RGD I +++++F+      + T   
Sbjct: 375 -------ASALGAEPAVRLEALRASTQAAAGVDAGRGDVIDVSAVEFVTAADLAATTSSP 427

Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486
             +   +    +V+ AL FL+  +LV    +  L        +    V G+  ++ P  +
Sbjct: 428 LLLQATA-QLGSVVKALAFLIALVLVLRFAIKPLVAAAASALSPPQSVEGEGAIAGPSNN 486

Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546
           + +   + P                               +  RL  +++ + ER A++L
Sbjct: 487 TRLAGPMGPP----------------------------PSAADRLAALVDQDSERAAEVL 518

Query: 547 RKWARSEIE 555
           R W R+  E
Sbjct: 519 RSWVRAGEE 527


>gi|153836097|ref|ZP_01988764.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AQ3810]
 gi|260362945|ref|ZP_05775814.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus K5030]
 gi|260880232|ref|ZP_05892587.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AN-5034]
 gi|260895349|ref|ZP_05903845.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus Peru-466]
 gi|149750851|gb|EDM61596.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AQ3810]
 gi|308085629|gb|EFO35324.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus Peru-466]
 gi|308092563|gb|EFO42258.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AN-5034]
 gi|308112147|gb|EFO49687.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus K5030]
          Length = 571

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 123/563 (21%), Positives = 239/563 (42%), Gaps = 38/563 (6%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           + ++L Q + S       R L+L++V+   +   +    + +S  +  LY + E  D+  
Sbjct: 18  VTNKLKQLWSSS-----QRNLVLSAVLAAIVAAIIVVALWSSSQSFRPLYSQQERFDIGE 72

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L    + +R+ +    + VP   V + R+ LA++G+  +   +G +   + +S G 
Sbjct: 73  IVSVLESEGVSYRMQEQNGQVLVPEGEVARIRMLLASKGV-KAKLPTGLDSLKEDSSLGT 131

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI-GARPTASVMIRAIN 181
           + FM+       LEGE+ RTI S++ +  ARVH+ +P    F +  G  P+ASVM+    
Sbjct: 132 SQFMETARYRHGLEGELVRTIMSLNSVANARVHLAIPRQTLFVRQNGENPSASVMLELKP 191

Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIVQA 236
               K    EAI +L+  +V  +    V+V+D  G+LL+A+           K L   + 
Sbjct: 192 GEDLKPEQVEAIINLIVGSVTAMKPEFVSVIDQYGRLLSADVASAEAGKVNAKYLEYQKN 251

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           ++ +I       L   +G  NFR  V A+++    +    + D ++ V R+    ++   
Sbjct: 252 VEKQIIQRAADMLTPIVGPSNFRVQVAADMDFSQVEETREILD-NAPVVRNEHTIQNNSI 310

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
            + +          N P V+  +     S     + E    Y + +    T +   ++E+
Sbjct: 311 DQIAL--GVPGSLSNQPPVT-GEAATNDSQNTNARSEVNRQYAVGSSVRRTQYQQGQIEK 367

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           LS++V++N     + +         D+  A+I+ +++ A GI++ RGD++++ S +F   
Sbjct: 368 LSVSVLLNSKASPDGV------AWSDADKAQISTMITDAVGISAARGDSLSLMSFNFTPI 421

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476
            + ++ T    + D       TV   L +++G +L   +    LR L          V  
Sbjct: 422 DI-DAPTALPWWQD------PTVQQPLRYVIGGMLGLAMIFFVLRPLIMHLTGADKPVPE 474

Query: 477 KSILSPPPISSA----VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL- 531
            +   PP          T     ++ +     ++   S S  L    +      S L + 
Sbjct: 475 LNFAEPPQEEPDYDNLQTREEREHEEVLNRRLSEKGISASTGLDVNSDMLPPAGSPLEIQ 534

Query: 532 ---LHMIE-INEERFAKILRKWA 550
              L +I     ER A+IL++W 
Sbjct: 535 LKHLQLIANEEPERVAEILKQWV 557


>gi|328469325|gb|EGF40271.1| flagellar MS-ring protein [Vibrio parahaemolyticus 10329]
          Length = 571

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 123/563 (21%), Positives = 238/563 (42%), Gaps = 38/563 (6%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           + ++L Q + S       R L+L++V+   +   +    + +S  +  LY + E  D+  
Sbjct: 18  VTNKLKQLWSSS-----QRNLVLSAVLAAIVAAIIVVALWSSSQSFRPLYSQQERFDIGE 72

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L    + +R+ +    + VP   V + R+ LA++G+  +   +G +   + +S G 
Sbjct: 73  IVSVLESEGVSYRMQEQNGQVLVPEGEVARIRMLLASKGV-KAKLPTGLDSLKEDSSLGT 131

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI-GARPTASVMIRAIN 181
           + FM+       LEGE+ RTI S++ +  ARVH+ +P    F +  G  P+ASVM+    
Sbjct: 132 SQFMETARYRHGLEGELVRTIMSLNSVANARVHLAIPRQTLFVRQNGENPSASVMLELKP 191

Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIVQA 236
               K    EAI +L+  +V  +    V+V+D  G+LL+A+           K L   + 
Sbjct: 192 GEDLKSEQVEAIINLIVGSVTAMKPEFVSVIDQYGRLLSADVASAEAGKVNAKYLEYQKN 251

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           ++ +I       L   +G  NFR  V A+++    +    + D ++ V R+    ++   
Sbjct: 252 VEKQIIQRAADMLTPIVGPSNFRVQVAADMDFSQVEETREILD-NAPVVRNEHTIQNNSI 310

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
            + +          N P V+        S     + E    Y + +    T +   ++E+
Sbjct: 311 DQIAL--GVPGSLSNQPPVTGDAA-TNDSQNTNARSEVNRQYAVGSSVRRTQYQQGQIEK 367

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           LS++V++N     + +         D+  A+I+ +++ A GI++ RGD++++ S +F   
Sbjct: 368 LSVSVLLNSKASPDGV------AWSDADKAQISTMITDAVGISAARGDSLSLMSFNFTPI 421

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476
            + ++ T    + D       TV   L +++G +L   +    LR L          V  
Sbjct: 422 DI-DAPTALPWWQD------PTVQQPLRYVIGGMLGLAMIFFVLRPLIMHLTGADKPVPE 474

Query: 477 KSILSPPPISSA----VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL- 531
            +   PP          T     ++ +     ++   S S  L    +      S L + 
Sbjct: 475 LNFAEPPQEEPDYDNLQTREEREHEEVLNRRLSEKGISASTGLDVNSDMLPPAGSPLEIQ 534

Query: 532 ---LHMIE-INEERFAKILRKWA 550
              L +I     ER A+IL++W 
Sbjct: 535 LKHLQLIANEEPERVAEILKQWV 557


>gi|117620247|ref|YP_855904.1| flagellar MS-ring protein [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117561654|gb|ABK38602.1| flagellar M-ring protein FliF [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 560

 Score =  357 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 104/555 (18%), Positives = 214/555 (38%), Gaps = 31/555 (5%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           F S T + R   LIL   I + I +F+    +   P    L       ++ +    L + 
Sbjct: 21  FLSNTDVLRQITLILGLAICLAIAVFIL--LWGKEPDMRPLGT-YTTQELVKTLDYLDQQ 77

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS--SNSGYELFDKVNSFGLTSFMQE 128
            I +++  +G S+ V +      R+ L   GL +++  ++ G ++  K +SFG++  M+ 
Sbjct: 78  KIPYQV--DGKSVLVSAENYSSIRLALTRAGLANATDTTSDGEDILLKDSSFGVSQRMES 135

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV-YKS 187
                + E ++A  I+    +  A+V + +P    F +   +P+A+V++     ++    
Sbjct: 136 ERLKLSRERQLASAIEQFQNVAKAQVLLAIPKDNVFARNERKPSATVVLSLKGNALGQGE 195

Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNI 245
            ++I  +VA+AV  L+   VTV D  G+LL +   +       K  ++ Q  + E +  I
Sbjct: 196 VDSIVDMVASAVHGLEPTRVTVTDQNGRLLNSGSQDPVSAQTRKEFAMQQKQELEYKQKI 255

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305
           +  L   LG DN+ + V   L+   Q+     Y+PD    RS    ++   S        
Sbjct: 256 DAILIPVLGADNYTAEVDLSLDFSQQEQTRKTYNPDLPAVRSEMTMEEN--SANGSNGGV 313

Query: 306 VTVEQNMPHVSDR--------KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
                N P  +                S     +KE   N+E++T           + R+
Sbjct: 314 PGALSNQPPAASNIPQQATGPNAETTASSSGRSRKEATRNFELDTTVSHIRRQMGGIRRM 373

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           +++V V+    T   G+   + +    L  + +++S   G +  RGDT+ + ++ F   +
Sbjct: 374 TVSVAVDYKASTAADGKVTREPRTQPELDTLRRLLSGGLGFDVTRGDTLEVVAIPFNRPE 433

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
           L +     +       R    V  A   LV  +L+  +    L+RL   D   +GE+   
Sbjct: 434 LESVAEAPLYEQPWFWR---AVRIAASVLVIIVLIVTVVRPMLKRLLYPDAKPEGELDFD 490

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
           +                          +  +     +    +           +  ++  
Sbjct: 491 NHTVLGGDDELSLLAAQAESEPVFGVRDGHLKLPDLHRDEDL--------LKAVRALVAN 542

Query: 538 NEERFAKILRKWARS 552
             +  A+++++W  +
Sbjct: 543 EPDLAAQVIKEWVAN 557


>gi|149191163|ref|ZP_01869421.1| flagellar M-ring protein [Vibrio shilonii AK1]
 gi|148835001|gb|EDL51980.1| flagellar M-ring protein [Vibrio shilonii AK1]
          Length = 557

 Score =  357 bits (915), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 132/526 (25%), Positives = 227/526 (43%), Gaps = 34/526 (6%)

Query: 38  AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97
               + ++  +  LY K    D +++   L E +I +++S +   I VP   V K R+ L
Sbjct: 55  VIMLWTSAERFRPLYSKSANFDSSQVLQLLDEESIRYQLSQDDGQILVPEGDVAKIRMIL 114

Query: 98  AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
           A++GL      SG++  D   S G + FM+      ALEGE+AR+I ++S +  ARVH+ 
Sbjct: 115 ASKGL-KEQLPSGFDSLDSSKSLGESQFMENARYRHALEGELARSITTMSAVSLARVHLA 173

Query: 158 MPDMGSF-RKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTG 214
           +P    F R+ G +P ASV++  IN    K    E++ +LV+ AV  L    V V+D  G
Sbjct: 174 IPKESLFMREDGEQPRASVIVHIINGMDLKPTQVESVINLVSGAVIGLKSEHVRVVDQHG 233

Query: 215 KLLTANEMERNI---LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ 271
           +LL+ +    +I    GK     + ++  +       L   LG  NFR  + ++++    
Sbjct: 234 RLLSNDATVGDITVTTGKQSDYKRNLERTLVAQATDMLTPILGASNFRVQIASDIDFSRI 293

Query: 272 QIREIVY-DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD 330
           +  E +Y DP   V R   L  D   S  +          N P V+D + P P      +
Sbjct: 294 EETEEIYADP---VVRKETLLNDVNESSMAL--GIPGALSNTPPVTDGE-PQPEPNAKVN 347

Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINK 390
           + E   +Y ++ K     H    L+ LS+++VVN          +A+Q      L  +  
Sbjct: 348 RSETSRDYAVSGKVRHIQHQQGVLQNLSVSIVVNDLA-------NANQTWTPEELTNVEN 400

Query: 391 IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL 450
           +V +A G +  RGDTI IT   F+   + +   V   F +        ++  L +L+G +
Sbjct: 401 VVRSAIGFSETRGDTIHITHFPFVVASIPDQAPV-AWFENT------NIMQPLKYLLGVM 453

Query: 451 LVTFLGLHALRRLH----NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQ 506
           L   + +  LR L        + ++ E                    + +   +L     
Sbjct: 454 LSGLMIMVVLRPLAQYLTKSAEQEEQEAESMEYDDVITKEERAAEAALQSKLESLGIDAT 513

Query: 507 DIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
            I +   NL S  +    +   L+L  + + +  R A+ILR W ++
Sbjct: 514 GIKALDDNLPSADSPLEVQIKHLKL--IAKEDPNRVAEILRTWIQA 557


>gi|330447943|ref|ZP_08311591.1| flagellar M-ring protein FliF [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492134|dbj|GAA06088.1| flagellar M-ring protein FliF [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 580

 Score =  357 bits (915), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 119/562 (21%), Positives = 229/562 (40%), Gaps = 37/562 (6%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++ +   + S       R L+L++V+   +   +    + +S +Y  LY + E  D   I
Sbjct: 29  IENIKNLWDSS-----QRNLVLSAVLAAIVAAIIVVALWSSSQNYRPLYGQQERFDSGEI 83

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    I +R+ +    + V    V K R+ LAA+G+  +   +G +   + +S G +
Sbjct: 84  ISVLETEGIPYRLQEANGQVLVAEGEVAKIRMLLAAKGI-KAKLPTGLDSLKEDSSLGTS 142

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAINP 182
            FM+       LEGE+ RTI ++  I  ARVH+ +P    F +  A  PTASVM+     
Sbjct: 143 QFMETARYRHGLEGELVRTIIALDAIANARVHLAIPRKTLFVRHNAEAPTASVMVELKPG 202

Query: 183 SVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIVQAI 237
              K    EAI +LV  +V  +   +V+V+D  G+LL+A+     +     K L   + +
Sbjct: 203 EDLKTEQVEAIINLVTGSVTGMKTENVSVVDQYGRLLSADIGSTEMGKVNAKYLDYQKNL 262

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           + ++       L   +G  N+R  V A+L+    Q  + V D    V+   R+  ++   
Sbjct: 263 EKQVIQRAADMLTPIVGPSNYRVQVAADLDFSHVQETKEVVDSAPVVKNEHRIENNSID- 321

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
             +          N P V+  +     S    ++ E    Y + +    T +   KL +L
Sbjct: 322 --NIALGVPGSLSNKPPVTGEEENKD-SKNTNERTEINRQYALGSSVRHTQYQQGKLNKL 378

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           +++V++N                 ++   +I+ ++  A GI++ RGD+++I S +F    
Sbjct: 379 NVSVLLNSTAAPNGS------AWTEAETQQISAMIKDAVGISADRGDSLSILSFNFTPIA 432

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
           +     +       + +    +I      +  L + F  L  L       D  + E+   
Sbjct: 433 IEAPPAIPWWQDPTVQQPLRYMIGG----ILGLSMIFFVLRPLITHLTGLDRGRKELTFA 488

Query: 478 SILSPPPISSAVTTGLMPNDNIALD---------SSNQDIFSHSRNLQSRINSYVSKQSD 528
               P      + T        +L+         S+N  + + +  L  + +    +   
Sbjct: 489 EEDIPQEYDENLKTRAEQEHEESLNERLAAKGIESANNALNASNDLLPPQGSPLEIQLKH 548

Query: 529 LRLLHMIEINEERFAKILRKWA 550
           L+L  +     ER A++L++W 
Sbjct: 549 LQL--ISNEEPERVAEVLKQWV 568


>gi|315179670|gb|ADT86584.1| Flagellar biosynthesis/type III secretory pathway lipoprotein
           [Vibrio furnissii NCTC 11218]
          Length = 579

 Score =  357 bits (915), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 120/568 (21%), Positives = 236/568 (41%), Gaps = 32/568 (5%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           +L Q + S       R L+L++V+   +   +    + +S  +  LY + E  DV  I  
Sbjct: 30  KLKQLWSSS-----QRNLVLSAVLAAIVAALIVVALWSSSQSFRPLYGQQEQFDVGDIVS 84

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L   +I +R+ +    + VP   V + R+ LAA+G+  +   +G +   + +S G + F
Sbjct: 85  VLEAESISYRLQEQNGQVLVPEGEVARVRMLLAAKGI-KAKLPTGLDSLQEDSSLGTSQF 143

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI-GARPTASVMIRAINPSV 184
           M+       LEGE+ RTI +++ +  ARVH+ +P    F +  G  P+ASVM+       
Sbjct: 144 METARYRHGLEGELVRTIIALNAVSNARVHLAIPRQTLFVRQNGEAPSASVMLELKAGED 203

Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAIQH 239
            K    EAI +LV  +V  +    V+V+D  G+LL+A+        +  K L   + ++ 
Sbjct: 204 LKPEQVEAIINLVVGSVTGMKPEFVSVIDQYGRLLSADVASGDSGKVNAKYLDYQKNLEK 263

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           ++       L   +G  NFR  V A+++    +  + + D ++ V ++    ++    + 
Sbjct: 264 QVIQRAADMLTPIVGPSNFRVQVAADMDFSRVEETQEILD-NTPVVQNEHTVQNNSIDQI 322

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           +          N P V+  K P   S  +  + E    Y + +    T +   ++++L++
Sbjct: 323 AL--GIPGSLSNQPPVTGEK-PTQDSQNSNARSEINRQYAVGSSVRRTQYQQGQVKKLNV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           +V++N        G        D    EI+ ++  A GI++ RGD++++ S +F   ++ 
Sbjct: 380 SVLLNSAAAPNGTG------WSDQEKTEISAMLMDAVGISAARGDSLSLMSFNFTPIEIE 433

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
              ++       + +    VI  L+     + + F  L  L       D +  E+     
Sbjct: 434 APPSIPWWQDPTVQQPLRYVIGGLL----GMAMIFFVLRPLIMHLTGADRRSQELEFAPP 489

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL----LHMI 535
              P   +  T      ++       +     S  L    +      S L +    L +I
Sbjct: 490 PEEPYYENLQTREEREREDALNRRLEEKGIKASSGLDVSSDMLPPPGSPLEIQLKHLQLI 549

Query: 536 E-INEERFAKILRKWAR-SEIEDRYTQH 561
                ER A++L++W   +E      + 
Sbjct: 550 ANEEPERVAEVLKQWVNVNEHSTVNAEP 577


>gi|260901174|ref|ZP_05909569.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AQ4037]
 gi|308109395|gb|EFO46935.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AQ4037]
          Length = 571

 Score =  357 bits (915), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 123/563 (21%), Positives = 238/563 (42%), Gaps = 38/563 (6%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           + ++L Q + S       R L+L++V+   +   +    + +S  +  LY + E  D+  
Sbjct: 18  VTNKLKQLWSSS-----QRNLVLSAVLAAIVAAIIVVALWSSSQSFRPLYSQQERFDIGE 72

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L    + +R+ +    + VP   V + R+ LA++G+  +   +G +   + +S G 
Sbjct: 73  IVSVLESEGVSYRMQEQNGQVLVPEGEVARIRMLLASKGV-KAKLPTGLDSLKEDSSLGT 131

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI-GARPTASVMIRAIN 181
           + FM+       LEGE+ RTI S++ +  ARVH+ +P    F +  G  P+ASVM+    
Sbjct: 132 SQFMETARYRHGLEGELVRTIMSLNSVANARVHLAIPRQTLFVRQNGETPSASVMLELKP 191

Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIVQA 236
               K    EAI +L+  +V  +    V+V+D  G+LL+A+           K L   + 
Sbjct: 192 GEDLKPEQVEAIINLIVGSVTAMKPEFVSVIDQYGRLLSADVASAEAGKVNAKYLEYQKN 251

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           ++ +I       L   +G  NFR  V A+++    +    + D ++ V R+    ++   
Sbjct: 252 VEKQIIQRAADMLTPIVGPSNFRVQVAADMDFSQVEETREILD-NAPVVRNEHTIQNNSI 310

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
            + +          N P V+        S     + E    Y + +    T +   ++E+
Sbjct: 311 DQIAL--GVPGSLSNQPPVTGDAA-TNDSQNTNARSEVNRQYAVGSSVRRTQYQQGQIEK 367

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           LS++V++N     + +         D+  A+I+ +++ A GI++ RGD++++ S +F   
Sbjct: 368 LSVSVLLNSKASPDGV------AWSDADKAQISTMITDAVGISAARGDSLSLMSFNFTPI 421

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476
            + ++ T    + D       TV   L +++G +L   +    LR L          V  
Sbjct: 422 DI-DAPTALPWWQD------PTVQQPLRYVIGGMLGLAMIFFVLRPLIMHLTGADKPVPE 474

Query: 477 KSILSPPPISSA----VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL- 531
            +   PP          T     ++ +     ++   S S  L    +      S L + 
Sbjct: 475 LNFAEPPQEEPDYDNLQTREEREHEEVLNRRLSEKGISASTGLDVNSDMLPPAGSPLEIQ 534

Query: 532 ---LHMIE-INEERFAKILRKWA 550
              L +I     ER A+IL++W 
Sbjct: 535 LKHLQLIANEEPERVAEILKQWV 557


>gi|317180754|dbj|BAJ58540.1| flagellar MS-ring protein [Helicobacter pylori F32]
          Length = 567

 Score =  357 bits (915), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 123/548 (22%), Positives = 239/548 (43%), Gaps = 29/548 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEV 57
           +L +++ FF       + +I ++A+ +L+  +L     +      Y       L+ +L+ 
Sbjct: 6   LLQRIVDFFIKLNK--KQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFERLDS 63

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
           SD   I   L +  I ++I  +  +I +P   V + RI LA+QG+P +S   G+E+FD  
Sbjct: 64  SDNALILQHLQQNQIPYKILKD-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFDTK 121

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
           + FG T F Q I  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+ASVM+
Sbjct: 122 D-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180

Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232
           +              I++L+AAAVP L + +V +++  G+ +   +     + +  + L 
Sbjct: 181 KIKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLH 240

Query: 233 IVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
             Q  ++ +E  I   LA  +G  N   + V AE +   ++  +  +DP++ V     L 
Sbjct: 241 YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE 300

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+         + 
Sbjct: 301 EKKEGAPKKQVGGVPGVVSNIGPVQGLKD--NKEPEKYEKSQNTTNYEVGKTISEIKGEF 358

Query: 352 YKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
             L RL+ AVVV+      L +       +   D  L +IN +V  A G N  RGD + +
Sbjct: 359 GTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDDVAV 418

Query: 409 TSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463
           ++ +F     + ++ T+    M    +   +    + +++  +++       +     R+
Sbjct: 419 SNFEFNPMAPMLDNATLSEKIMHKTQKVLGSFTPLIKYILVFIVLFIFYKKVIVPFSERM 478

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRIN 520
             +   +  EV                 G +     D + L+++  +       +  +I 
Sbjct: 479 LEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIVLEKIR 538

Query: 521 SYVSKQSD 528
             + ++ D
Sbjct: 539 GTLKERPD 546


>gi|297379568|gb|ADI34455.1| flagellar M-ring protein FliF [Helicobacter pylori v225d]
          Length = 567

 Score =  357 bits (915), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 122/548 (22%), Positives = 238/548 (43%), Gaps = 29/548 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEV 57
           +L +++ FF       + +I ++A+ +L+  +L     +      Y       L+ +L+ 
Sbjct: 6   LLQRIVDFFIKLNK--KQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFERLDS 63

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
           SD   I   L +  I ++I  +  +I +P   V + RI LA+QG+P +S   G+E+FD  
Sbjct: 64  SDNALILQHLQQNQIPYKILKD-DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFDTK 121

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
           + FG T F Q I  +RA+EGE++RTI++++ I+ A VHI +P    F      P+ASVM+
Sbjct: 122 D-FGATDFDQNIKLIRAIEGELSRTIENLNPILKANVHIAIPKDSVFVAKEVPPSASVML 180

Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLS 232
           +              I++L+AAAVP L   +V +++  G+ +   +     + +  + L 
Sbjct: 181 KLKPDMKLSPTQILGIKNLIAAAVPKLTTENVKIVNENGESIGEGDILENSKELALEQLR 240

Query: 233 IVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
             Q  ++ +E  I   LA  +G  N   + V AE +   ++  +  +DP++ V     L 
Sbjct: 241 YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE 300

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+         + 
Sbjct: 301 EKKEGAPKKQVGGVPGVVSNIGPVQGLKD--NKEPEKYEKSQNTTNYEVGKTISEIKGEF 358

Query: 352 YKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
             L RL+ AVVV+      L +       +   D  L +IN +V  A G N  RGD + +
Sbjct: 359 GTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDDVAV 418

Query: 409 TSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463
           ++ +F     + ++ T+    M    +   +    + +++  +++       +     R+
Sbjct: 419 SNFEFNPMVPMLDNATLSEKIMHKTQKVLGSFTPLIKYILVFIVLFIFYKKVIVPFSERM 478

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRIN 520
             +   +  EV                 G +     D + L+++  +       +  +I 
Sbjct: 479 LEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIVLEKIR 538

Query: 521 SYVSKQSD 528
             + ++ D
Sbjct: 539 GTLKERPD 546


>gi|269960163|ref|ZP_06174539.1| flagellar M-ring protein [Vibrio harveyi 1DA3]
 gi|269835134|gb|EEZ89217.1| flagellar M-ring protein [Vibrio harveyi 1DA3]
          Length = 583

 Score =  357 bits (915), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 119/559 (21%), Positives = 234/559 (41%), Gaps = 31/559 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           + ++L Q + S       R L+L++V+   +   +    + +S  +  LY + E  D+  
Sbjct: 31  VTNKLKQLWSSS-----QRNLVLSAVLAAIVAAIIVVALWSSSQSFRPLYSQQERFDIGE 85

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L    I +R+ +    + VP   V + R+ LA++G+  +   +G +   + +S G 
Sbjct: 86  IVSVLETEGISYRMQEQNGQVLVPEGEVARIRMLLASKGV-KAKLPTGLDSLKEDSSLGT 144

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAIN 181
           + FM+       LEGE+ RTI S++ +  ARVH+ +P    F +     P+ASVM+    
Sbjct: 145 SQFMETARYRHGLEGELVRTIMSLNAVANARVHLAIPRQTLFVRQNTENPSASVMLELKP 204

Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIVQA 236
               K    EAI +LV  +V  +    V+V+D  G+LL+A+           K L   ++
Sbjct: 205 GEDLKPEQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLSADVASAEAGKVNAKYLEYQKS 264

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           ++ +I       L   +G  NFR  V A++N    +  + + D ++ V R+    ++   
Sbjct: 265 VEKQIIQRAADMLTPIVGPSNFRVQVAADMNFSQVEETQEILD-NAPVVRNEHTIQNNSV 323

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
            + +          N P V+  + P   S     + E    Y + +    T +   ++E+
Sbjct: 324 DQIAL--GIPGSLSNQPPVT-GETPTNDSQNTNARSEINRQYAVGSSVRRTQYQQGQIEK 380

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           LS++V++N     + +         ++   +I+ ++  A GI++ RGD++++ S +F   
Sbjct: 381 LSVSVLLNSQAAPDGV------AWSEADKTQISTMIMDAVGISNTRGDSLSLMSFNFTPI 434

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476
           ++     +       + +    VI  ++     L + F  L  L       D    E+  
Sbjct: 435 EIDAPPALPWWQDPTVQQPLRYVIGGML----GLAMIFFVLRPLIMHLTGADKPAPELEF 490

Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL----L 532
                 P   +  T      + +     ++   + S  L    +      S L +    L
Sbjct: 491 AEPQVEPEYDNLQTREEREREEVLNRKLSEKGIAVSSGLDVNSDMLPPAGSPLEIQLKHL 550

Query: 533 HMIE-INEERFAKILRKWA 550
            +I     ER A+IL++W 
Sbjct: 551 QLIANEEPERVAEILKQWV 569


>gi|302392396|ref|YP_003828216.1| flagellar M-ring protein FliF [Acetohalobium arabaticum DSM 5501]
 gi|302204473|gb|ADL13151.1| flagellar M-ring protein FliF [Acetohalobium arabaticum DSM 5501]
          Length = 524

 Score =  357 bits (915), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 140/564 (24%), Positives = 240/564 (42%), Gaps = 58/564 (10%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            +++Q+ + + +  +  +  I   A V ++ ++L      + + P+Y  L+  L + D  
Sbjct: 7   QMIEQVKELWNNLDTKAKVIISSSAIVSIIVLLL---VTNWASQPNYVTLFNDLTMKDAG 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I+  L E  ID+++  +G+ ISVP+  V + R+ LA++GLP   +  G+E+FDK    G
Sbjct: 64  AITKQLDEKQIDYKLGADGTKISVPAQKVHQVRLDLASKGLPQKGA-VGFEIFDKNQ-LG 121

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
            T F Q++   RAL GE+AR+I  +  +  A+V I  P    +        ASVM++   
Sbjct: 122 STDFEQQVNFYRALSGELARSIMHLQNVKFAKVQISAPRESLYLDKKKVVKASVMLKMKE 181

Query: 182 --PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE------MERNILGKSLSI 233
                 K  E I +LVA++V +L   +VTV+D  G LLTA           +   K L +
Sbjct: 182 YAELDLKQVEGITNLVASSVEDLKPENVTVVDDRGNLLTAELNKEDKFNNTDFSPKLLEL 241

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRL 290
               +  +E  +N  L+  LG DN    V A+LN D +Q+    Y+P   D  V RS + 
Sbjct: 242 ENDFESNMESELNTMLSKVLGPDNVVVRVNAKLNFDRRQMESRTYEPVNDDQGVVRSEQS 301

Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
           ++ +   +   P      E N+P              N DK+E  +NYEIN K    T  
Sbjct: 302 TEVSYSGQGDTPSGVPGTESNIPGYE----GGEEQSSNYDKEETTTNYEINEKIETYTQV 357

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
              +E++S+AV+V+K                 +    I + V +A G ++ RGD ITIT+
Sbjct: 358 PGDVEKMSVAVMVDK-------------ELSPAQTESIRQSVESAVGYSAERGDQITITN 404

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
            +F  +          +      R +  +    + ++      FL L  LR         
Sbjct: 405 FEFDRSLEKKMTAEMEAQKSAEQRRWIIIGIITILVLII---GFLILRRLR--------- 452

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPND-NIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
                            A   G    + ++ +D   Q   + +   +        K+   
Sbjct: 453 ------------SGSGRAGDGGQGAEELDVVVDDQGQTETAATEEKELSPEERKRKEMKE 500

Query: 530 RLLHMIEINEERFAKILRKWARSE 553
            +  ++E   E  A++L+ W   E
Sbjct: 501 EISDLVEQQPEEVARLLKTWLAEE 524


>gi|163783983|ref|ZP_02178948.1| Flagellar M-ring protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880743|gb|EDP74282.1| Flagellar M-ring protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 522

 Score =  357 bits (915), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 123/524 (23%), Positives = 226/524 (43%), Gaps = 48/524 (9%)

Query: 37  MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIH 96
                  +  +Y  LY  L   D  ++   L E  I +++  NGS I VP   V   R+ 
Sbjct: 39  FFIYSLSSKENYAVLYTNLSPEDAGQVLTVLQEEKIPYKVEGNGSIILVPKDKVYDVRLK 98

Query: 97  LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHI 156
           LA++G+P S S  G+E+FD+    G+T F + I  +RALEGE+ RTI+ ++ ++ A+V+I
Sbjct: 99  LASKGIP-SGSTVGFEIFDE-PKMGITQFQENINYIRALEGELERTIRQLNAVIDAKVNI 156

Query: 157 VMPDMGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTG 214
            MP    F +   +P ASV+I+         +  +AI  LV+ AVP L   +VTV D+ G
Sbjct: 157 AMPKESIFAREEDQPKASVLIKLAPGKDLTPEQVKAIVFLVSRAVPKLKPENVTVADNRG 216

Query: 215 KLLTA--NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272
           ++L+    E E     K+L + + ++ +IE N+   L+  LG D        E+      
Sbjct: 217 RVLSDVLEETETAKADKTLQLKRKLERQIERNVQSMLSKALGSDKVVVRATVEVETGQLH 276

Query: 273 IREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332
            ++ +YDPD     S R  K+  +++            N+P + D      R L    K+
Sbjct: 277 QKDELYDPDKVAIVSERRIKEEVKTKQKSEIGPPGTSTNVPPIMD--TGQDRYLVEKKKE 334

Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG--RLTEVLGRSADQ--GKIDSYLAEI 388
           +   NY+++   I  +   +K++++S+ V+++     + +  G  + +   +    L + 
Sbjct: 335 DRTRNYDVSKSIINKSQPIFKIKKVSVGVLIDGKYQEIKDKNGNVSYKFIPRSKEELKQY 394

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            +++ +A G + +RGD +TI S+ F                DI            + L+ 
Sbjct: 395 EELIKSAIGFDPKRGDKVTIVSVPF----EKKPEVAVKEKTDIRK----------IILLS 440

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
            + + FL L  +     +   KK E      + P  +    T      +           
Sbjct: 441 VIGILFLTLLLITLALILKARKKPETAVGYGIPPETLQGMATVREAEIEV---------- 490

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
                           +   ++LL ++E N +  A +++ W + 
Sbjct: 491 ------------GIEKEPEYIQLLKILEENPQIVANLVKTWIKE 522


>gi|29423531|gb|AAO73593.1| lateral flagellar FliF-like M-ring protein [Vibrio
           parahaemolyticus]
          Length = 584

 Score =  356 bits (914), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 123/563 (21%), Positives = 238/563 (42%), Gaps = 38/563 (6%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           + ++L Q + S       R L+L++V+   +   +    + +S  +  LY + E  D+  
Sbjct: 31  VTNKLKQLWSSS-----QRNLVLSAVLAAIVAAIIVVALWSSSQSFRPLYSQQERFDIGE 85

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L    + +R+ +    + VP   V + R+ LA++G+  +   +G +   + +S G 
Sbjct: 86  IVSVLESEGVSYRMQEQNGQVLVPEGEVARIRMLLASKGV-KAKLPTGLDSLKEDSSLGT 144

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI-GARPTASVMIRAIN 181
           + FM+       LEGE+ RTI S++ +  ARVH+ +P    F +  G  P+ASVM+    
Sbjct: 145 SQFMETARYRHGLEGELVRTIMSLNSVANARVHLAIPRQTLFVRQNGENPSASVMLELKP 204

Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIVQA 236
               K    EAI +L+  +V  +    V+V+D  G+LL+A+           K L   + 
Sbjct: 205 GEDLKPEQVEAIINLIVGSVTAMKPEFVSVIDQYGRLLSADVASAEAGKVNAKYLEYQKN 264

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           ++ +I       L   +G  NFR  V A+++    +    + D ++ V R+    ++   
Sbjct: 265 VEKQIIQRAADMLTPIVGPSNFRVQVAADMDFSQVEETREILD-NAPVVRNEHTIQNNSI 323

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
            + +          N P V+        S     + E    Y + +    T +   ++E+
Sbjct: 324 DQIAL--GVPGSLSNQPPVTGDAA-TNDSQNTNARSEVNRQYAVGSSVRRTQYQQGQIEK 380

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           LS++V++N     + +         D+  A+I+ +++ A GI++ RGD++++ S +F   
Sbjct: 381 LSVSVLLNSKASPDGV------AWSDADKAQISTMITDAVGISAARGDSLSLMSFNFTPI 434

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476
            + ++ T    + D       TV   L +++G +L   +    LR L          V  
Sbjct: 435 DI-DAPTALPWWQD------PTVQQPLRYVIGGMLGLAMIFFVLRPLIMHLTGADKPVPE 487

Query: 477 KSILSPPPISSA----VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL- 531
            +   PP          T     ++ +     ++   S S  L    +      S L + 
Sbjct: 488 LNFAEPPQEEPDYDNLQTREEREHEEVLNRRLSEKGISASTGLDVNSDMLPPAGSPLEIQ 547

Query: 532 ---LHMIE-INEERFAKILRKWA 550
              L +I     ER A+IL++W 
Sbjct: 548 LKHLQLIANEEPERVAEILKQWV 570


>gi|149189866|ref|ZP_01868146.1| flagellar M-ring protein [Vibrio shilonii AK1]
 gi|148836352|gb|EDL53309.1| flagellar M-ring protein [Vibrio shilonii AK1]
          Length = 582

 Score =  356 bits (914), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 119/562 (21%), Positives = 232/562 (41%), Gaps = 42/562 (7%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           ++ Q + S       R L+L++V+   +   +    + +S  Y  LY + E  D+  I  
Sbjct: 33  KVKQLWSSS-----QRNLVLSAVLAAIVAAIIVVALWSSSQSYRPLYSQQERFDIGEIVS 87

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L    I +R+ +    + V    V K R+ LAA+G+  +   +G +   + +S G + F
Sbjct: 88  VLESEGIAYRLQEQNGQVLVAEGQVAKIRMLLAAKGV-KAQLPTGLDSLKEDSSLGTSQF 146

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG-ARPTASVMIRAINPSV 184
           M+       LEGE+ RTI S++ I  ARVH+ +P    F +     P+ASVMI       
Sbjct: 147 MENARYRHGLEGELVRTIISLNAISNARVHLAIPRQTLFVRQQGEEPSASVMIELKPGED 206

Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIVQAIQH 239
            K    EAI +LV  +V  +    V+V+D  G+LL+A+           K L   + ++ 
Sbjct: 207 LKPDQVEAIINLVVGSVTGMKPEFVSVIDQYGRLLSADVGSAEAGKVNAKYLEYQKNVEK 266

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           +I       L   +G  N+R  V A+++    +  + + D +  V     +  +      
Sbjct: 267 QIIQRAADMLTPIVGPSNYRVQVAADMDFSRVEETQEILDTNPVVRNEHSIQNNTID--- 323

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
                      N P V+  +VP   S     + E    Y + +    T +   ++ +LS+
Sbjct: 324 KIALGIPGSLSNQPPVT-GEVPTNDSQNTNARSELNRQYAVGSSVRRTQYQQGQISKLSV 382

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           +V++N+                 +  A+I+ +++ A GI++ RGD++++ S +F   ++ 
Sbjct: 383 SVLLNESAAPNGT------AWTPAERAQISTMITDAVGISADRGDSLSLMSFNFTPIEI- 435

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL-----------HNIDD 468
            +      + D       TV   L +++G +L   +    LR L           + ++ 
Sbjct: 436 EAPPAMPWWQD------PTVQQPLRYVIGGMLGMAMIFFVLRPLIMHLTGADKRGNELEF 489

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
           A+  E   +  +                    ++S++  + + S  L    +    +   
Sbjct: 490 AEPQEEEYQENIQTREEREREEMLNRRLSEKGIESTSSGLDASSDMLPPPGSPLEIQLKH 549

Query: 529 LRLLHMIEINEERFAKILRKWA 550
           L+L  +     ER A++L++W 
Sbjct: 550 LQL--IANEEPERVAEVLKQWV 569


>gi|78045011|ref|YP_359840.1| flagellar MS-ring protein [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77997126|gb|ABB16025.1| flagellar M-ring protein FliF [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 528

 Score =  356 bits (914), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 121/559 (21%), Positives = 226/559 (40%), Gaps = 42/559 (7%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           ++L  + + F++ +S  +    IL   IL  ++  +    F+  P Y  L   L+  +  
Sbjct: 5   SLLASIKERFQNLSSFQKRAYGIL---ILTAVLSLLLGYIFLGRPSYTPLATGLDAKEAG 61

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I+  L E  I++++ D G++I VP S V +ARI LA+ G+  ++S  G+ELFD+    G
Sbjct: 62  AIAEKLKEWKINYKLGDEGTTILVPKSQVYEARIKLASAGVLETNSGIGFELFDQT-KLG 120

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV--MIRA 179
            + F  ++   RAL+ E+ RTI  +  +  ARVH+V+P+   F       TAS+   ++ 
Sbjct: 121 ASDFENQVNYQRALQEELRRTIVQLDAVEDARVHLVLPEKSVFISEEKPATASILLKLKP 180

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQ 235
           +     +  + I +LVA +V  L   +V V+D+ G +L+     +       G+   + +
Sbjct: 181 LKKLTPQEIKGIIYLVANSVEGLKPENVQVVDTYGNVLSDQVDLSSSLSAQSGRQQEMKK 240

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
             + E+   IN  L   LG      ++ A+L+ + ++    +  P   V  S + SK+  
Sbjct: 241 QFETELTNRINNLLTTILGPGKAVVSINADLDFNQEETTSQIALPGPLV--SEQGSKEVV 298

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
                   +  T      +     +    + E   K++   NY++             ++
Sbjct: 299 YGSPGASGTVGTGPNTNQNY--PYINGSTNGEVQVKEDFTRNYQVGQTVYKLVKAPGTVK 356

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           RLS A+ ++ G                + + +I  IV+AA G +  RGD I I ++ F +
Sbjct: 357 RLSAAIAIDSGV-------------PAADVNKIRDIVAAAMGYDQNRGDQIIINTITF-D 402

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVT-FLGLHALRRLHNIDDAKKGEV 474
             L      Q +      +    +   L    G L+    +    +RR      A     
Sbjct: 403 KTLAKQMEEQQAQAQKEQQARQALYKWLAIGAGALVFLSIIVFFGIRRFRKKPAA----- 457

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
                     IS     G+   +  A       I       +  I     +    ++  +
Sbjct: 458 -------VADISPRAPVGVSELEAAAAAERGPGIIVREMTAE-PIVIQKVQSDIEKIKSL 509

Query: 535 IEINEERFAKILRKWARSE 553
           ++ N +  A +LR W   E
Sbjct: 510 VDKNPDEVAMVLRAWLTDE 528


>gi|28901391|ref|NP_801046.1| flagellar MS-ring protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|28809938|dbj|BAC62879.1| putative flagellar M-ring protein [Vibrio parahaemolyticus RIMD
           2210633]
          Length = 584

 Score =  356 bits (914), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 123/563 (21%), Positives = 239/563 (42%), Gaps = 38/563 (6%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           + ++L Q + S       R L+L++V+   +   +    + +S  +  LY + E  D+  
Sbjct: 31  VTNKLKQLWSSS-----QRNLVLSAVLAAIVAAIIVVALWSSSQSFRPLYSQQERFDIGE 85

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L    + +R+ +    + VP   V + R+ LA++G+  +   +G +   + +S G 
Sbjct: 86  IVSVLESEGVSYRMQEQNGQVLVPEGEVARIRMLLASKGV-KAKLPTGLDSLKEDSSLGT 144

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI-GARPTASVMIRAIN 181
           + FM+       LEGE+ RTI S++ +  ARVH+ +P    F +  G  P+ASVM+    
Sbjct: 145 SQFMETARYRHGLEGELVRTIMSLNSVANARVHLAIPRQTLFVRQNGENPSASVMLELKP 204

Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIVQA 236
               K    EAI +L+  +V  +    V+V+D  G+LL+A+           K L   + 
Sbjct: 205 GEDLKPEQVEAIINLIVGSVTAMKPEFVSVIDQYGRLLSADVASAEAGKVNAKYLEYQKN 264

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           ++ +I       L   +G  NFR  V A+++    +    + D ++ V R+    ++   
Sbjct: 265 VEKQIIQRAADMLTPIVGPSNFRVQVAADMDFSQVEETREILD-NAPVVRNEHTIQNNSI 323

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
            + +          N P V+  +     S     + E    Y + +    T +   ++E+
Sbjct: 324 DQIAL--GVPGSLSNQPPVT-GEAATNDSQNTNARSEVNRQYAVGSSVRRTQYQQGQIEK 380

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           LS++V++N     + +         D+  A+I+ +++ A GI++ RGD++++ S +F   
Sbjct: 381 LSVSVLLNSKASPDGV------AWSDADKAQISTMITDAVGISAARGDSLSLMSFNFTPI 434

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476
            + ++ T    + D       TV   L +++G +L   +    LR L          V  
Sbjct: 435 DI-DAPTALPWWQD------PTVQQPLRYVIGGMLGLAMIFFVLRPLIMHLTGADKPVPE 487

Query: 477 KSILSPPPISSA----VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL- 531
            +   PP          T     ++ +     ++   S S  L    +      S L + 
Sbjct: 488 LNFAEPPQEEPDYDNLQTREEREHEEVLNRRLSEKGISASTGLDVNSDMLPPAGSPLEIQ 547

Query: 532 ---LHMIE-INEERFAKILRKWA 550
              L +I     ER A+IL++W 
Sbjct: 548 LKHLQLIANEEPERVAEILKQWV 570


>gi|153831728|ref|ZP_01984395.1| flagellar M-ring protein FliF [Vibrio harveyi HY01]
 gi|148872238|gb|EDL71055.1| flagellar M-ring protein FliF [Vibrio harveyi HY01]
          Length = 556

 Score =  356 bits (913), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 119/559 (21%), Positives = 234/559 (41%), Gaps = 31/559 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           + +++ Q + S       R L+L++V+   +   +    + +S  +  LY + E  D+  
Sbjct: 4   VTNKIKQLWSSS-----QRNLVLSAVLAAIVAAIIVVALWSSSQSFRPLYSQQERFDIGE 58

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L    I +R+ +    + VP   V + R+ LA++G+  +   +G +   + +S G 
Sbjct: 59  IVSVLESEGISYRMQEQNGQVLVPEGEVARIRMLLASKGV-KAKLPTGLDSLKEDSSLGT 117

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAIN 181
           + FM+       LEGE+ RTI S++ +  ARVH+ +P    F +     P+ASVM+    
Sbjct: 118 SQFMETARYRHGLEGELVRTIMSLNAVANARVHLAIPRQTLFVRQNTENPSASVMLELKP 177

Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIVQA 236
               K    EAI +LV  +V  +    V+V+D  G+LL+A+           K L   ++
Sbjct: 178 GEDLKPEQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLSADVASAEAGKVNAKYLEYQKS 237

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           ++ +I       L   +G  NFR  V A++N    +  + + D ++ V R+    ++   
Sbjct: 238 VEKQIIQRAADMLTPIVGPSNFRVQVAADMNFSQVEETQEILD-NAPVVRNEHTIQNNSV 296

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
            + +          N P V+  + P   S     + E    Y + +    T +   ++E+
Sbjct: 297 DQIAL--GIPGSLSNQPPVT-GETPTNDSQNTNARSEVNRQYAVGSSVRRTQYQQGQVEK 353

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           LS++V++N     + +         ++  ++I+ ++  A GI++ RGD++++ S +F   
Sbjct: 354 LSVSVLLNSQAAPDGV------AWSEADKSQISTMIMDAVGISNARGDSLSLMSFNFTPI 407

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476
           ++     +       + +    VI      V  L + F  L  L       D    E+  
Sbjct: 408 EIDAPPALPWWQDPTVQQPLRYVIGG----VLGLAMIFFVLRPLIMHLTGADKPAQELEF 463

Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL----L 532
                 P   +  T      + +     ++   + S  L    +      S L +    L
Sbjct: 464 AEPQEEPQYDNLQTREEREREELLNRKLSEKGIAVSSGLDVNSDMLPPAGSPLEIQLKHL 523

Query: 533 HMIE-INEERFAKILRKWA 550
            +I     ER A+IL++W 
Sbjct: 524 QLIANEEPERVAEILKQWV 542


>gi|99082787|ref|YP_614941.1| flagellar MS-ring protein [Ruegeria sp. TM1040]
 gi|99039067|gb|ABF65679.1| Flagellar M-ring protein [Ruegeria sp. TM1040]
          Length = 571

 Score =  356 bits (913), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 155/576 (26%), Positives = 240/576 (41%), Gaps = 41/576 (7%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           + Q+   +     L + + ++     L  I  F       N P    LY  LE S    +
Sbjct: 14  VQQIKNVWAG---LDKRKRMMAIGATLAVIFTFFLMSLVANKPSMQLLYAGLESSSAGDV 70

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
             AL ++ +D+ +   G SI VPSS   + R+ LA+QGLP++    GYEL D ++ FG T
Sbjct: 71  VSALEQSGVDYEVR--GGSIYVPSSKRDELRMTLASQGLPANGGK-GYELLDSLSGFGTT 127

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN-P 182
           S M +    RA EGE+ARTI +   +  ARVHI       F++    PTASV +  +  P
Sbjct: 128 SQMFDAAYWRAKEGELARTIVANPHVSQARVHIANTGSNPFQRTIE-PTASVSVTPMGSP 186

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242
                A AIR LVA+AV  L + +V V+D+ G L+ + E        +    Q     + 
Sbjct: 187 ITPSQANAIRFLVASAVAGLAVDNVAVIDANGALIGSPEAAAAAGAGTDDRSQT----LR 242

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
             + + + A +G  N    +  E   DT+ IRE   DP S+V  S  + +    S+    
Sbjct: 243 ERVLRLVEARVGQGNAVVEISVETITDTESIREKRVDPQSRVAISTDVEERIDSSQN--Q 300

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
              VTV  N+P           S  +T+   E+ NYEI+            ++RL++AV+
Sbjct: 301 AGEVTVASNIPDGDAGN--GEGSKASTNATRERVNYEISETEKEIVRGPGAIKRLTVAVL 358

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           +N        G +A + + +  L  + +++SAA G ++ RGD IT+ SMD L N      
Sbjct: 359 INGVTTETAEGEAAFEPRPEEELEALRELISAAVGFDAERGDVITLKSMD-LPNVEPLGT 417

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA-----KKGEVGGK 477
            V  S  D L     ++I      +  L    LGL  +R +   + A        +    
Sbjct: 418 EVTSSVFDNLYFDVMSIIQMAALAIVAL---ILGLFVVRPILAGNGASVQALPSPDGVAA 474

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY--------------- 522
             L   P  S    G M N ++  + +              +                  
Sbjct: 475 GGLPELPDMSGGDAGFMTNPDLGANIALDGEIDGGDGGFQPLGDLPGMGDGLAGFGGGGG 534

Query: 523 -VSKQSDLRLLHMIEINEERFAKILRKWARSEIEDR 557
            +S     RL  MI   +E   +ILR W     E+R
Sbjct: 535 GMSDDPVDRLRSMIGERQEETVQILRGWLEENNEER 570


>gi|156976202|ref|YP_001447108.1| flagellar MS-ring protein [Vibrio harveyi ATCC BAA-1116]
 gi|156527796|gb|ABU72881.1| hypothetical protein VIBHAR_04973 [Vibrio harveyi ATCC BAA-1116]
          Length = 583

 Score =  355 bits (912), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 119/559 (21%), Positives = 234/559 (41%), Gaps = 31/559 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           + +++ Q + S       R L+L++V+   +   +    + +S  +  LY + E  D+  
Sbjct: 31  VTNKIKQLWSSS-----QRNLVLSAVLAAIVAAIIVVALWSSSQSFRPLYSQQERFDIGE 85

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L    I +R+ +    + VP   V + R+ LA++G+  +   +G +   + +S G 
Sbjct: 86  IVSVLESEGISYRMQEQNGQVLVPEGEVARIRMLLASKGV-KAKLPTGLDSLKEDSSLGT 144

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAIN 181
           + FM+       LEGE+ RTI S++ +  ARVH+ +P    F +     P+ASVM+    
Sbjct: 145 SQFMETARYRHGLEGELVRTIMSLNAVANARVHLAIPRQTLFVRQNTENPSASVMLELKP 204

Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIVQA 236
               K    EAI +LV  +V  +    V+V+D  G+LL+A+           K L   ++
Sbjct: 205 GEDLKPEQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLSADVASAEAGKVNAKYLEYQKS 264

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           ++ +I       L   +G  NFR  V A++N    +  + + D ++ V R+    ++   
Sbjct: 265 VEKQIIQRAADMLTPIVGPSNFRVQVAADMNFSQVEETQEILD-NAPVVRNEHTIQNNSV 323

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
            + +          N P V+  + P   S     + E    Y + +    T +   ++E+
Sbjct: 324 DQIAL--GIPGSLSNQPPVT-GETPTNDSQNTNARSEVNRQYAVGSSVRRTQYQQGQVEK 380

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           LS++V++N     + +         ++  ++I+ ++  A GI++ RGD++++ S +F   
Sbjct: 381 LSVSVLLNSQAAPDGV------AWSEADKSQISTMIMDAVGISNARGDSLSLMSFNFTPI 434

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476
           ++     +       + +    VI      V  L + F  L  L       D    E+  
Sbjct: 435 EIDAPPALPWWQDPTVQQPLRYVIGG----VLGLAMIFFVLRPLIMHLTGADKPAQELEF 490

Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL----L 532
                 P   +  T      + +     ++   + S  L    +      S L +    L
Sbjct: 491 AEPQEEPQYDNLQTREEREREEVLNRKLSEKGIAVSSGLDVNSDMLPPAGSPLEIQLKHL 550

Query: 533 HMIE-INEERFAKILRKWA 550
            +I     ER A+IL++W 
Sbjct: 551 QLIANEEPERVAEILKQWV 569


>gi|146278778|ref|YP_001168937.1| flagellar MS-ring protein [Rhodobacter sphaeroides ATCC 17025]
 gi|145557019|gb|ABP71632.1| flagellar M-ring protein FliF [Rhodobacter sphaeroides ATCC 17025]
          Length = 543

 Score =  355 bits (912), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 136/553 (24%), Positives = 243/553 (43%), Gaps = 26/553 (4%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +  L+  +      GR R +++ +   + + +F  ++F  N P    LY  L+ +    +
Sbjct: 14  VQNLISIWNDLD--GRRRAIVVGATAAMFLAIFGLSQF-ANKPRMALLYAGLQGAVAGEV 70

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
             AL    + + +   G SI V +S   + R+ LA +GLP++ + +GYEL D ++ FG T
Sbjct: 71  VAALEAQGVAYEVQ--GDSIHVDASRRDELRMKLAGEGLPATGT-AGYELLDGLSGFGTT 127

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP- 182
           S M +   +RA EGE+ARTI +   + AARVHI       F++   RPTASV +      
Sbjct: 128 SQMFDAAYLRAKEGELARTILASPQVKAARVHIAPAAAQLFQRER-RPTASVTVTTSGGN 186

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242
              + A A +HL+A+AV  +   DV+V+D+ G L+ A +    I G + +       E+ 
Sbjct: 187 LTMEQARAFKHLIASAVAGMQPEDVSVIDTVGGLIRAGDTGDGIAGTAGTRA----AELR 242

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
            N+ + L A +G       V  ++   ++ I E  +DP  +V  S  L +    S ++QP
Sbjct: 243 RNVERLLEARVGPGRAVVEVSLDVETASETIVEKTFDPKGRVPISSELQEKT--SSSTQP 300

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
              VTV  N+P              N+ +  E +N+E++            + RL++AV+
Sbjct: 301 APDVTVASNLPE--GDAAGGSAGKSNSSETRETTNFEVSQTQRELVRQPGTVRRLTVAVL 358

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           V+  R+    G+   Q + +  LA + ++V AA G++  RGD +T+ S+ F       + 
Sbjct: 359 VDGVRMAGEDGQLTWQPRPEEELAVLRELVGAAVGLDESRGDRLTLRSLIFETPPDLGTL 418

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482
                   + S    ++I   V  +  L++    +  +  L    D           L  
Sbjct: 419 AEAGMLGRLGSFDLMSLIQIAVLALVALVLGLFVVRPV--LTARRDPALSSATPPLALPG 476

Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542
              ++   TG + +        + D+        + ++         RL  +IE  +   
Sbjct: 477 YGGTNEALTGEIDD--------STDLPDFPMVASAPLDFDDEPDPVARLRRLIEERQAES 528

Query: 543 AKILRKWARSEIE 555
            +ILR W   + E
Sbjct: 529 VEILRGWMEPQRE 541


>gi|46204512|ref|ZP_00209445.1| COG1766: Flagellar biosynthesis/type III secretory pathway
           lipoprotein [Magnetospirillum magnetotacticum MS-1]
          Length = 435

 Score =  355 bits (912), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 159/435 (36%), Positives = 245/435 (56%), Gaps = 9/435 (2%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M   +Q  + + +   LG  R++ L  V L+  +      ++++ P  + LY  L   DV
Sbjct: 1   MFGREQAERLWSNIVDLGARRLIALGLVGLLVFLGVGVGAYYLSRPAQETLYTGLSREDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           +RI   L +  I F +S +G+++ V      +AR+ LA +GLP SS  SGYELF+ + S 
Sbjct: 61  SRIGGVLKDNGIPFDVSSDGTAVLVSFGHTAQARMLLAEKGLPQSSK-SGYELFNDLGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           G+TSFMQE+TRVRALEGEIARTIQ + G+ AARVH+V+PD GSFR+     +ASV++R  
Sbjct: 120 GMTSFMQEVTRVRALEGEIARTIQGMKGVRAARVHLVLPDRGSFRREQQPASASVVVRTE 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK-LLTANEMERNILGKSLSIVQAIQH 239
                  A+AIR LVA+A+P +    VTV+ S G  LL  ++      GK  ++ +++  
Sbjct: 180 PADDVSGAQAIRQLVASAIPGMKPDRVTVIGSEGTVLLAGDDAGTAPTGKMATLEKSVSR 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           E++ NI + LA +LGV NF  +V  +LN D     E +Y+PD +VERS+R  ++ + ++ 
Sbjct: 240 EMQDNIRRTLAPYLGVGNFEVSVATQLNTDKTSTNETIYNPDQRVERSVRSVRENENAQN 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
              +   + ++N+P    R     +S   + KKE+ +NYEI+ K+I T  D Y + RLS+
Sbjct: 300 RNSQRPTSAQENLPDQRTRSDGNDQSSNESSKKEDLTNYEISQKTIQTVSDGYAIRRLSV 359

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN------SRRGDTITITSMDF 413
           AV+VN+ RLT + G   D+  ID  +AEI  I S              RGD I + ++ F
Sbjct: 360 AVLVNRSRLTAMAGPD-DKAGIDKQIAEIEXIGSGLPXPRPRXLPARERGDIIKVAAVGF 418

Query: 414 LENQLFNSGTVQVSF 428
           + +         +S 
Sbjct: 419 INDGQPLEPVPPLSL 433


>gi|315452715|ref|YP_004072985.1| Flagellar basal-body M-ring protein FliF [Helicobacter felis ATCC
           49179]
 gi|315131767|emb|CBY82395.1| Flagellar basal-body M-ring protein (FliF) [Helicobacter felis ATCC
           49179]
          Length = 567

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 122/563 (21%), Positives = 241/563 (42%), Gaps = 34/563 (6%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNS-----PHYDNLYVKLE 56
            +  Q++  F     L + + + + S  ++ +   +    +         +Y  L+  ++
Sbjct: 5   GLFQQIIDLFAR---LNKAQKITIVSAFVLVVAFLIFLLVYPTKGNNDLSNYGVLFEGMD 61

Query: 57  VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
            SD   +   L +  I ++I  +  +I +P   + + RI LA+QG+P +S   GYE+FD 
Sbjct: 62  NSDNALVLQYLQQKQIPYKIPKD-DTILIPKDKIYEERIALASQGIPKTSK-VGYEIFDT 119

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
            + FG T F Q I  +RA+EGE++RTI+S++ I  A VHI +P    F      PTASVM
Sbjct: 120 KD-FGATDFDQNIKYIRAIEGELSRTIESLTPIDKASVHIAIPKDSVFVSREIPPTASVM 178

Query: 177 IRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSL 231
           ++         K    I++L+AA+VP L + +V +++  G+ L  +   +  + +    L
Sbjct: 179 LKIKPNMRLLPKQILGIKNLIAASVPKLTVENVKLVNENGEPLGEDDELDTTKELAQAQL 238

Query: 232 SIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290
              Q  ++ +E  I+  LA  + G D   + V AE +   ++  +  +DP++ V RS + 
Sbjct: 239 HYKQNFENLLESKISNILAPIVGGRDKVVAKVSAEFDFSQKKSTKETFDPNN-VVRSEQS 297

Query: 291 SKDAQRSET-SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
            ++ +      Q      V  N+  V  + V   +  E  +K    +NYE+         
Sbjct: 298 MEEKREGYPKKQVGGVPGVVSNIGPV--QGVANDQLKEKYEKSTNTTNYEVGKTVSEIKG 355

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRS---ADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
           +   L RL+ AVVV+          +            + +IN +V  A G +  RGD +
Sbjct: 356 EFGVLTRLNAAVVVDGRYKKVDKNGTETIEYVPLSAEEMDKINALVKQAIGYSQSRGDAV 415

Query: 407 TITSMDF-LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL----R 461
            +++ +F  +   +   +    F++   R+     +   +L+  L++       +    +
Sbjct: 416 AVSNFEFNAKTAKYVPISAYEKFVNTTERYLGPFSSLFKYLIIGLILYVFYKKVITPFSQ 475

Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSR 518
           R+  I   ++ +V     +           G M     D + L +S  +       +  R
Sbjct: 476 RMLEIQPDEEEKVQSLFAMDEDDEEEIDRFGEMRKKVEDQLGLSASFNEEDVKYDIMLER 535

Query: 519 INSYVSKQS--DLRLLHMIEINE 539
           +   + ++      L  ++  +E
Sbjct: 536 VKGALKEKPAEVASLFQLLIKDE 558


>gi|309388817|gb|ADO76697.1| flagellar M-ring protein FliF [Halanaerobium praevalens DSM 2228]
          Length = 512

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 139/553 (25%), Positives = 249/553 (45%), Gaps = 59/553 (10%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
           +  ++ T L ++  +++  + ++    F    F   S +Y  L+  L  SD   I   L 
Sbjct: 11  EVKETWTKLNKSVQILIIILTILMAGAFGYLIFRGASSNYQPLFTNLSTSDTAAIVERLD 70

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
           E  +D+++  NG++I VP S + + R+ +A+ GLP      G+E+FD  + FG T F + 
Sbjct: 71  ENQVDYKLGGNGNTILVPESEIHRLRLDMASAGLPDQGV-VGFEIFDS-SDFGTTEFERR 128

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYK 186
           +   RAL GE++R+IQSISGI  ARV I  P+   F       TASV+++         +
Sbjct: 129 VNYYRALGGELSRSIQSISGIEFARVQITPPEESLFLDEEKSATASVVVKLSAGYKMSSE 188

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAIQHEIEM 243
              A+++LVA+ V +L + +VT++D+ G LL+     E  R    ++ +I +  +  ++ 
Sbjct: 189 RVRAVQNLVASGVQDLPLEEVTLVDTNGNLLSKPVNSEDGRWSDPQNFAIQKEFESALKN 248

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQRSETS 300
           ++   L   LG +NF   V A+LN D +      Y P   DS + RS  ++ ++Q  E  
Sbjct: 249 DLRVLLTKVLGPNNFAVQVNAKLNFDQRHSESKTYAPVIDDSGIIRSQEVNTESQ--ENG 306

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
               A   + N+P           S    D++   +NYEIN +     +   ++ERLS++
Sbjct: 307 INGGAPGTDANIPQYQAEGTGEASS---YDRENTITNYEINERIEEHIYAPGEVERLSVS 363

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           V+++             Q   +  +A+I   V AA G N  RGD + I+S+ F ++    
Sbjct: 364 VMLD-------------QDTDEEKIAQIRNAVGAAIGYNEDRGDVLNISSIAFDDSMEVA 410

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
           +     +      R     I A + L+  +L + L ++  R+  + D +++ E+  +   
Sbjct: 411 AQEAMEAQQAAERRQM--YIYAGLILLVLILTSALIIYLYRKKPSSDQSEQLELAAE--- 465

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
                                     +I     N   +  + V  +    L +MI  + E
Sbjct: 466 ----------------------GDEDEIDLFEPNADQKKRAKVKNE----LENMIHSDPE 499

Query: 541 RFAKILRKWARSE 553
             AK++R W   E
Sbjct: 500 NAAKLIRSWIVDE 512


>gi|149203111|ref|ZP_01880082.1| flagellar M-ring protein FliF [Roseovarius sp. TM1035]
 gi|149143657|gb|EDM31693.1| flagellar M-ring protein FliF [Roseovarius sp. TM1035]
          Length = 535

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 144/555 (25%), Positives = 259/555 (46%), Gaps = 25/555 (4%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           + Q+ + +++ T   R RI+++ +  ++   +   AR   ++P    LY  LE S    +
Sbjct: 1   MQQITRLWQALT--LRNRIIVIGAAFVMFWAVLALARM-ASTPSMTLLYAGLESSAAGEV 57

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
             AL +  + + + ++  +I V S+   + R+ LA +GLP S + SGYEL D ++ FG T
Sbjct: 58  VAALEQQGVTYEVRND--AILVDSTRRDELRMILAGEGLPRSGT-SGYELLDGLSGFGTT 114

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
           S M +    RA EGE+ARTI S   IVAARVHI       F++   R +ASV +     +
Sbjct: 115 SQMFDAAYWRAKEGELARTIVSHPAIVAARVHIASTGANPFQRNVHR-SASVSVSTNGAA 173

Query: 184 VY-KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242
           V  K A A++ LVA+AV +L   DV+++D+ G LL+  E  +       +        + 
Sbjct: 174 VSAKHARALQFLVASAVADLTPDDVSIIDAEGTLLSGAEEAKTNTADERA------EGLR 227

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
           +   + L A +G  N    +  E    T+  RE  +DP+ +V  S    + A  S  +  
Sbjct: 228 LRAQRLLEARVGHGNAVVEIALETVTQTESTRERRFDPEGRVAISTDTEERANTS--NGT 285

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
           ++ VTV  N+P           S     +  E+ NYE+++           ++R+++A++
Sbjct: 286 DNGVTVASNLPD--GDAAAAATSASENTETRERVNYEVSSTEREVIQQPGAIKRMTVAIL 343

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           +N     +  G      + +  L  +  +V +A G++  RGD +TI ++ F E       
Sbjct: 344 INGITTPDASGTPIFAPRPEEELTALGDLVGSAVGLDETRGDALTIRTLQF-EPSAPTGT 402

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482
            V+   ++ L+    T++ +LV  +  L+   LGL  LR + +             I   
Sbjct: 403 LVEAGLLERLAIDTMTLVQSLVLAIVALV---LGLFVLRPILSRPVPLATPQLSAPIRRA 459

Query: 483 PPISSAVT--TGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
           P    A+T  +G++ + +I +   +    +   +L+ R++   +     RL  +I   +E
Sbjct: 460 PVQDPALTPLSGVIEDGDIDVAGLSDVSEAPQISLRPRLDGG-TDDPVSRLRALIGQRQE 518

Query: 541 RFAKILRKWARSEIE 555
              +ILR W  +E E
Sbjct: 519 ETVEILRNWLEAEEE 533


>gi|15606425|ref|NP_213805.1| flagellar M-ring protein [Aquifex aeolicus VF5]
 gi|6225356|sp|O67241|FLIF_AQUAE RecName: Full=Flagellar M-ring protein
 gi|2983628|gb|AAC07196.1| Flagellar M-ring protein [Aquifex aeolicus VF5]
          Length = 489

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 126/556 (22%), Positives = 240/556 (43%), Gaps = 75/556 (13%)

Query: 4   LDQLLQFF----KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           +D+L ++     +   +L   +  +   + L+ + L   A  +++  +Y  LY  L   D
Sbjct: 1   MDKLREYLNLLKERFNALTPVQKALAVGIPLLLLSLGAVALIYLSQENYTVLYTGLSPDD 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
           +N +   L +  + ++IS +G +I VP ++  + R+ LAA+G+P      GYELFDK + 
Sbjct: 61  LNAVVTELDKEGVKYKISPDGRTIYVPENVARELRLKLAAKGVPRKG-IVGYELFDK-SG 118

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
             L+ F Q +   RA+EGE+A+TI S+  +  ARVHIV+P+   F +      ASV ++ 
Sbjct: 119 IVLSRFQQLVNFKRAIEGELAKTIMSLDCVEFARVHIVLPEKSLFIREEEEAKASVFLKL 178

Query: 180 INP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQA 236
                   +  +AIR+LV+ +V NL    V V+D  G+ LTA  + E       L + + 
Sbjct: 179 KPGCELTPEQVKAIRNLVSGSVENLKPSQVVVVDDKGRDLTAYLDEEFKTNASQLKVKRE 238

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
            +  +E  + K L    G    +  V AEL+  + + RE +YDPD     S +  K+  R
Sbjct: 239 FEKSLERKLQKTLEEVFGYGKVKVNVSAELDFSSMKKREELYDPDLTAVVSEQKKKE--R 296

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
           + +++ +     + N+P  + R+         T++KE  +NYE++ + I       K++R
Sbjct: 297 TTSTRAQGIPGTQANIPPATGRQGGGELI---TERKESITNYEVSKREIYFEDKTIKVKR 353

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           +S+ +V++K                     E+  ++ A+ G++ +RGD ++I S+ F++ 
Sbjct: 354 ISVGLVIDKDVKVNT--------------EELKNLIIASAGLDPKRGDQVSIVSVPFVKP 399

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476
            +        +++             +   + +L++  L    L +L             
Sbjct: 400 TVVAEKPKVPTYV------------YVAVALVSLVILGLVAFGLVKLLRRRPPAPTPAPA 447

Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536
              + P                                    +     K     LL + +
Sbjct: 448 VPGVPPT-----------------------------------VEEVRKKTPYEELLEIAK 472

Query: 537 INEERFAKILRKWARS 552
              E+ A +L+KW + 
Sbjct: 473 QEPEKVAMVLKKWLKE 488


>gi|188997543|ref|YP_001931794.1| flagellar M-ring protein FliF [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932610|gb|ACD67240.1| flagellar M-ring protein FliF [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 536

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 125/561 (22%), Positives = 238/561 (42%), Gaps = 45/561 (8%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF-VNSPHYDNLYVKLEVSDVN 61
           I++++ + F+      + + +I   V L  I+L        ++   Y  LY  L   D  
Sbjct: 8   IINKIKEIFQ---DKAKQKYIIGGLVGLFLIILIAILITKNLHKEDYAVLYSGLAPDDAG 64

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I  ALS+ NI +++  NG+ I VP   V  AR+ LAA+GLP S    G+E+F++    G
Sbjct: 65  NILTALSQENIPYKLEGNGTIIMVPKDKVYDARLKLAAKGLP-SGKVVGFEIFEE-PKLG 122

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--A 179
            T F + +  +RA+EGE+ RTI+ +  ++ A+V+I +P    F +      ASV+I+   
Sbjct: 123 TTQFQENVNYIRAVEGELTRTIKQLDAVMDAKVNIALPKDSIFVRQEDEAKASVIIKLWP 182

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQA 236
                 +  +AI  LV+ AVPNL   +VTV+D+ G++L+     E       K++ + + 
Sbjct: 183 DKDLTKEQIKAIVFLVSRAVPNLKPENVTVVDNRGRVLSDLIDEESANESGDKTVDLKRK 242

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           ++ ++E +I   LA  +G +        EL       ++ +YDPD     S R  K+++ 
Sbjct: 243 LERQLEKDIQSMLAKVVGPERVVVKASVELETGKVHQKDEIYDPDKVAVVSERKIKESET 302

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
            E+    +      N+P V +  V +    +  +K +  +NY+++   I T    + +++
Sbjct: 303 EESQTINAPPGTPTNVPPVMNTPV-MGGGGKKKEKSDITTNYDVSKSMIETQKPLFTIKK 361

Query: 357 LSIAVVVN--KGRLTEVLGRSADQ--GKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
           +S+ V+++     + +  G    Q   +    L     ++ +A G +  RGD +T+ S+ 
Sbjct: 362 VSVGVMIDGKYKEIKDKDGNIIKQFEPRSQQELQSYENLIKSAIGFDPNRGDQVTVISVP 421

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F         + +                             +       L  +      
Sbjct: 422 FEATSTQEEVSTKQQ-------------------------NLIMYVIAGILLLLILGLLA 456

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
            +  K            TT   P   +A     + +       +S ++        L++L
Sbjct: 457 FIFIKKKKQKKEEIITATTLSAPLAGVAA----EALAKKYEEEKSLVSEIEKLPEYLKIL 512

Query: 533 HMIEINEERFAKILRKWARSE 553
            + E N +  A I+ KW + +
Sbjct: 513 EIAEENPQMIANIITKWIKED 533


>gi|83944186|ref|ZP_00956642.1| flagellar M-ring protein [Sulfitobacter sp. EE-36]
 gi|83845053|gb|EAP82934.1| flagellar M-ring protein [Sulfitobacter sp. EE-36]
          Length = 548

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 141/550 (25%), Positives = 252/550 (45%), Gaps = 24/550 (4%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           ++L    +  ++L +     V  P Y  LY  L ++  N I   L+ A  +  +S++G+S
Sbjct: 1   MMLGGAGIGVVLLMILGIGAVTRPDYAPLYSNLSITSANSIEATLANAGFNAMVSEDGTS 60

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           ISVP     +AR+ LA  G+P    + G+ELFD+ +   + SF+Q+I ++RA+EGE+AR+
Sbjct: 61  ISVPRGDAVRARMVLAETGMPIDG-DPGWELFDESSGLAMNSFLQKINKMRAMEGELARS 119

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS--VYKSAEAIRHLVAAAVP 200
           IQ++ GI +ARVH+V+PD   F +    P AS+++R  +      K A A+ +LVA+AV 
Sbjct: 120 IQTLDGISSARVHLVLPDREPFSRDAPAPRASIILRPESGRAVTRKQAVAVSNLVASAVA 179

Query: 201 NLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRS 260
           +LD+  VTVL ++G+ + A   + +  G   S    I+  +   I   L A +G  N R 
Sbjct: 180 DLDISRVTVLSASGETILAEGPDGSSQGGVQSAKAGIEDRLSQEIQNILTARVGAGNARV 239

Query: 261 AVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV 320
            V  EL    + I E  YDPD +V RS     + Q    ++    V VE N+P       
Sbjct: 240 HVNVELTTQREVIVEQTYDPDQQVVRSTETKSEDQTG--TKEAGNVGVENNIPAALADGN 297

Query: 321 PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380
               S   ++  +E   YEI         +   + R+S+AV+VN     +         +
Sbjct: 298 GAGTSTRRSEA-DEIVQYEIGNTRREIVREAGDVRRMSVAVLVNGIYNVDGSD-VIYAER 355

Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440
               LA + ++V  A G ++ RGD++++ SM F++  +     +  S  D LS +  +++
Sbjct: 356 TPEELARLGELVKTAVGFDTTRGDSVSVDSMRFMDYSMDLGDPIDKSIGDELSENVVSIV 415

Query: 441 NALVFLVGTLLVTFLGLHALRR--------------LHNIDDAKKGEVGGKSILSPPPIS 486
             ++ L+   L+   G+  + R                  + A +          P    
Sbjct: 416 RGVLALLVVGLILVFGVRPMLRKFSEGDQLNSYEDPALTAEKAAEPAALTAEGQRPKLPG 475

Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNL---QSRINSYVSKQSDLRLLHMIEINEERFA 543
           +      +  D+  L  ++ DI +        +  I   + K+    +  + +   +   
Sbjct: 476 TTPAVADIAEDDDPLTITDDDIEAAEVAEYVRKEGIRGNLHKKKIETIQQLADEKPQEVL 535

Query: 544 KILRKWARSE 553
           +++R W  +E
Sbjct: 536 RVIRSWLPAE 545


>gi|56460308|ref|YP_155589.1| flagellar MS-ring protein [Idiomarina loihiensis L2TR]
 gi|56179318|gb|AAV82040.1| Flagellar basal body M-ring protein [Idiomarina loihiensis L2TR]
          Length = 570

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 114/552 (20%), Positives = 215/552 (38%), Gaps = 29/552 (5%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
               + R  I++LA  I V I +F+    +     Y  L  +LE  ++      +    I
Sbjct: 36  GNFDMLRQVIVVLALAICVAIAVFI--MLWAQESTYRPL-GQLETEELISTLDYMDANGI 92

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSS-SSNSGYELFDKVNSFGLTSFMQEITR 131
           ++++   G+++SVP       ++ L   G+    S+N+G E+      FG++  ++    
Sbjct: 93  EYQVE--GNTVSVPEENYDAIKLQLTRAGVDYGNSTNNGSEILMSEPGFGVSQRLERERL 150

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYKSAE 189
           + + E ++AR I+ I  + AARV + +P    F +    P ASVM+          +   
Sbjct: 151 IHSREVQLARAIEEIKKVSAARVLLAVPKENVFARREKEPKASVMLNVRGGTSLSEEEVA 210

Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIV--QAIQHEIEMNINK 247
           +I  +VA++V  L+   VTV D  G+LL +          S      Q  +      I+ 
Sbjct: 211 SIVDMVASSVTGLNTESVTVTDQAGRLLNSGSQSALAAKSSREYQIEQKREEAYLEKIDS 270

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVT 307
            L   LG DN+ + V   ++   ++  +  ++PD    RS    ++  RS  S       
Sbjct: 271 ILIPVLGYDNYTAQVDVTMDFTQREETQRQFNPDMPAIRSEMTVEN--RSMGSAIGGIPG 328

Query: 308 VEQNMPHVSDRKVP------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
              N P +                   +  +E   NYE++     T +    ++RLS++V
Sbjct: 329 ALTNQPPLDSDIPEEAGDGTAGGGATGSTHREATRNYELDNSVTYTRNQTGTIKRLSVSV 388

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
            VN   +T   G    Q +    +A I +++    G +  RGD+I + S+ F +     +
Sbjct: 389 AVNHEAITNEAGEGETQARSAEEIANIRRLLQGGLGFDINRGDSIEVVSVPFAQLPDLGA 448

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
           G   V       R F  V+ ALV +V  L V       L++L N +     E    +   
Sbjct: 449 GETPVWEEPWFWRAFRLVMGALVIMVLILAV---VRPMLKKLMNPESG--VEDDADAFSD 503

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
              +       L    + +      D      +L    +   +      +  ++    E 
Sbjct: 504 EESMGDETIDLLSSQFDESAVGFGADGSLQLPDLHKDEDLLKA------VRALVANEPEL 557

Query: 542 FAKILRKWARSE 553
            +++++ W   +
Sbjct: 558 SSQVVKAWLNED 569


>gi|294678998|ref|YP_003579613.1| flagellar M-ring protein FliF [Rhodobacter capsulatus SB 1003]
 gi|294477818|gb|ADE87206.1| flagellar M-ring protein FliF [Rhodobacter capsulatus SB 1003]
          Length = 551

 Score =  354 bits (908), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 144/567 (25%), Positives = 257/567 (45%), Gaps = 30/567 (5%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           + QL+  ++    L  TR +++A   ++     +A   F +      LY  LE +    +
Sbjct: 1   MQQLMAVWQG---LDTTRRVLVAGATILMFAAILALSSFASRSDMALLYAGLEGARAGEV 57

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
             AL    + + +   G SI V ++   + R+ LA +GLP++   +GYEL D ++ FG T
Sbjct: 58  VAALDARAVPYEVR--GDSIYVDAARRDELRMALAGEGLPATGG-AGYELLDGLSGFGTT 114

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
           S M +    RA EGE+ARTI +   I AARVHI  P   SFRK    PTASV +   +  
Sbjct: 115 SQMFDAAYWRAKEGELARTIVANPMIRAARVHIAAPSGQSFRKEN-HPTASVTVTTASGG 173

Query: 184 VYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242
           +  + A+A++ LV++AV  +   DV+++DS   L++  +   N      +       E+ 
Sbjct: 174 LSPTHAKALKFLVSSAVQGMSPDDVSIIDSVAGLISTGDDVFNPAANDRA------EELR 227

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
            N+ + L A +G  N    V  +   + + I E   +PDS+V  S    + +++S+ ++P
Sbjct: 228 SNVERLLEARVGYGNAVVEVSVQTVTEREAITEKRIEPDSRVAISTETQERSEKSDDTKP 287

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
             AVTV  N+P          +S     +  EQ N+E++  +     +   ++RL++AV+
Sbjct: 288 -GAVTVASNLPQ--GDAANGGKSQSQASETREQVNFEVSETTREVLRNPGDIKRLTVAVL 344

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           V+     +  G +A   + D  LA + ++V++A G + +RGD ITI SM F       + 
Sbjct: 345 VDGVEGKDANGVTAITPRTDEELAALKELVASAVGFDEKRGDVITIRSMAFEPLAETGTE 404

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482
                F          +  A++ +V  +L  F+    L +     +A++       ++  
Sbjct: 405 ATSSLFASAPLDTMQLIKIAVLAIVALILGLFVMRPILAQRAAAAEAERAMNLPGGMIGS 464

Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI------------NSYVSKQSDLR 530
              +    TG + + ++ + S N        ++   +             S  +     R
Sbjct: 465 DEGTGRALTGEIADGDMPIGSMNVVSDFDIGDMPMTMGTGNFGDMGMGGESGQASDPVAR 524

Query: 531 LLHMIEINEERFAKILRKWARSEIEDR 557
           L  +IE  +    +ILR W   E E+R
Sbjct: 525 LKKLIEERQAESVEILRSWM-DEAEER 550


>gi|157961189|ref|YP_001501223.1| flagellar MS-ring protein [Shewanella pealeana ATCC 700345]
 gi|157846189|gb|ABV86688.1| flagellar M-ring protein FliF [Shewanella pealeana ATCC 700345]
          Length = 566

 Score =  354 bits (908), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 117/553 (21%), Positives = 233/553 (42%), Gaps = 31/553 (5%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
            G  + R   +ILA  I + + +F+    +   P Y  L  ++  +++ ++  AL +  +
Sbjct: 31  GGVDMLRQLTMILALAICLAVAVFV--MIWAQEPEYRPL-GQMSTAEMVQVLDALDKNQV 87

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
            + I   G  + VP       ++ L+ +GL +  +N+  +  +K + FG++  M++    
Sbjct: 88  KYEIQ--GDVVKVPEDKYQDVKMLLSREGLDNQEANN--DFLNKDSGFGVSQRMEQARLK 143

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN-PSVYKSAEAI 191
            + E  +AR I+ +  +  A+V + +P    F +  ++P+A+V++         +  ++I
Sbjct: 144 HSQEQNLARVIEELKSVTRAKVILALPRENVFARNRSKPSATVVVSTRRSGLSQEEVDSI 203

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEMNINKAL 249
             +VA+AV NL+   VTV D+ G+LL +   +    I  + L IVQ  + E    +   L
Sbjct: 204 VDIVASAVHNLEPNKVTVTDANGRLLNSGTQDGASAIARRELEIVQQKESEYRTKVESIL 263

Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309
              LG +NF S V   ++    +     Y+PD    RS  + ++   S            
Sbjct: 264 MPILGPENFTSQVDVSMDFTAVEQTAKRYNPDLPALRSEMVVENN--SAGGTSGGIPGAL 321

Query: 310 QNMPHVSDRKVPLPRSLEN------TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
            N P ++        + E+      T  KE   N+E+NT    T      L R+S++V V
Sbjct: 322 SNQPPMAADIPQEVNAEESLAVSSGTSHKEATRNFELNTTISHTRQQVGTLRRVSVSVAV 381

Query: 364 NKGRLT-EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           +         G      + +  LA I +++  A G N++RGD I + S+ F++  + ++ 
Sbjct: 382 DFKNGPVSEDGSVNRVPRTEQELANIRRLLEGAVGFNTQRGDIIEVVSVPFMDQLIEDAP 441

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482
             ++       R    V+ ALV LV  L V    L  L    ++    + + GG+ +   
Sbjct: 442 PQEMWEQPWFWRAVKLVLGALVVLVLILAVVRPMLKRLVYPDSVKMPDEPQTGGE-LAEI 500

Query: 483 PPISSAVTTGLM--PNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
               +A T G++  P    +       +  +       I +         +  ++    E
Sbjct: 501 EDQYAADTLGMLQRPEAEYSYADDGSILIPNLHKDDDMIKA---------IRALVANEPE 551

Query: 541 RFAKILRKWARSE 553
              ++++ W   +
Sbjct: 552 LSTQVVKNWLLED 564


>gi|148260475|ref|YP_001234602.1| flagellar M-ring protein FliF [Acidiphilium cryptum JF-5]
 gi|146402156|gb|ABQ30683.1| flagellar M-ring protein FliF [Acidiphilium cryptum JF-5]
          Length = 520

 Score =  354 bits (908), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 137/556 (24%), Positives = 246/556 (44%), Gaps = 44/556 (7%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           + Q   +  +LG  ++  + +V +  + L  A            LY  L + D + I+  
Sbjct: 1   MKQLIANLRALGPVKLGAMGAVAVAVLGLMAALVLTGGPSPSATLYSGLGLKDASHITET 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L  A+I + I + G S+ V  + + +AR+ LA   LP+ SSN G+ +FD  N    +SF+
Sbjct: 61  LKAAHIRYAIGNGGHSVLVTPAQLDEARLLLAQHNLPAGSSN-GFAIFDHKNPLLGSSFL 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSV 184
             I   RAL+ E+ RTI  I G+ A+RV +V+P    F    A   ASVM+    + P  
Sbjct: 120 NRIDETRALDSELERTINLIHGVEASRVQVVLPRRDEFSLNTAPAQASVMLSLAGVGPLD 179

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIE 242
           ++S EAI +LVA+AVP L   +++++D+ G LL       N  +  +  ++ Q+ + ++ 
Sbjct: 180 HESVEAILNLVASAVPGLKPNNISIVDNRGDLLAQAGRTDNSLLSSRDAALKQSTERQLS 239

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
             +   LAA +G +  R      ++ D  +     Y+P+ +V RS + ++ ++ S +S  
Sbjct: 240 EAVRSMLAAVVGPNQVRVVTAVSMDFDRSEQTSTTYNPNGQVVRSQQQTR-SKSSRSSGT 298

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
              V+V  N+P  +  K   P+ L+   K  + +NYEI+       H   ++ R+S+AV+
Sbjct: 299 NKTVSVSNNLPGATSSKA-GPKRLDTQSKSTQTTNYEISQDVKHIVHATPQITRISVAVM 357

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           ++  + T   G+     +  + +A+I K+V  A G +  RGD + + S+ F  N+L  S 
Sbjct: 358 LDDVKTTNPKGKVIWTPRSPAQVAQIRKLVETAIGYDKSRGDVVDVQSLQFAPNELPVSA 417

Query: 423 T---VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
               +       L      ++      +  LLV F     +RR+                
Sbjct: 418 KRSLIGRFLSSGLLMPLLRLLVTAAIGIAALLVVF--RPMVRRIIT-------------- 461

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
              PP ++     L+   N A+        ++                   +  +I+ + 
Sbjct: 462 ---PPENTTAEPALLAEQNGAIAGPATTEETN---------------PVKVIADLIDRHP 503

Query: 540 ERFAKILRKWARSEIE 555
           E    ILR W   E  
Sbjct: 504 EASVAILRDWLGQEGA 519


>gi|326403668|ref|YP_004283750.1| flagellar M-ring protein FliF [Acidiphilium multivorum AIU301]
 gi|325050530|dbj|BAJ80868.1| flagellar M-ring protein FliF [Acidiphilium multivorum AIU301]
          Length = 520

 Score =  354 bits (908), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 137/556 (24%), Positives = 246/556 (44%), Gaps = 44/556 (7%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           + Q   +  +LG  ++  + +V +  + L  A            LY  L + D + I+  
Sbjct: 1   MKQLIANLRALGPVKLGAMGAVAVAVLGLMAALVLTGGPSPSATLYSGLGLKDASHITET 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L  A+I + I + G S+ V  + + +AR+ LA   LP+ SSN G+ +FD  N    +SF+
Sbjct: 61  LKAAHIRYAIGNGGHSVLVTPAQLDEARLLLAQHNLPAGSSN-GFAIFDHKNPLLGSSFL 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSV 184
             I   RAL+ E+ RTI  I G+ A+RV +V+P    F    A   ASVM+    + P  
Sbjct: 120 NRIDETRALDSELERTINLIHGVEASRVQVVLPRRDEFSLSTAPAQASVMLSLAGVGPLD 179

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIE 242
           ++S EAI +LVA+AVP L   +++++D+ G LL       N  +  +  ++ Q+ + ++ 
Sbjct: 180 HESVEAILNLVASAVPGLKPNNISIVDNRGDLLAQAGRTDNSLLSSRDAALKQSTERQLS 239

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
             +   LAA +G +  R      ++ D  +     Y+P+ +V RS + ++ ++ S +S  
Sbjct: 240 EAVRSMLAAVVGPNQVRVVTAVSMDFDRSEQTSTTYNPNGQVVRSQQQTR-SKSSRSSGT 298

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
              V+V  N+P  +  K   P+ L+   K  + +NYEI+       H   ++ R+S+AV+
Sbjct: 299 NKTVSVSNNLPGATSSKA-GPKRLDTQSKSTQTTNYEISQDVKHIVHATPQITRISVAVM 357

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           ++  + T   G+     +  + +A+I K+V  A G +  RGD + + S+ F  N+L  S 
Sbjct: 358 LDDVKTTNPKGKVIWTPRSPAQVAQIRKLVETAIGYDKSRGDVVDVQSLQFAPNELPVSA 417

Query: 423 T---VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
               +       L      ++      +  LLV F     +RR+                
Sbjct: 418 KRSLIGRFLSSGLLMPLLRLLLTAAIGIAALLVVF--RPMVRRIIT-------------- 461

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
              PP ++     L+   N A+        ++                   +  +I+ + 
Sbjct: 462 ---PPENTTAEPALLAEQNGAIAGPATTEETN---------------PVKVIADLIDRHP 503

Query: 540 ERFAKILRKWARSEIE 555
           E    ILR W   E  
Sbjct: 504 EASVAILRDWLGQEGA 519


>gi|157165014|ref|YP_001466462.1| flagellar MS-ring protein [Campylobacter concisus 13826]
 gi|112801613|gb|EAT98957.1| flagellar M-ring protein FliF [Campylobacter concisus 13826]
          Length = 565

 Score =  353 bits (907), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 127/565 (22%), Positives = 236/565 (41%), Gaps = 37/565 (6%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEV 57
           A+L Q+ Q ++    L   + ++  S I++ +   +    + +       Y  L+  +  
Sbjct: 5   ALLHQISQIYQ---KLSLKQKIVAGSSIVLVVAFLVFLTLYKSKSDSFVGYSVLFENISP 61

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
           SD   I   L++  I +++++ G +I VP+S V K RI +A  G+P  S   G+E+FDK 
Sbjct: 62  SDSALIVDQLNKDGIKYKLANEG-TILVPTSDVYKERIAVATLGIPKESK-IGFEIFDKQ 119

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
             FG T   Q +   RALEGE+ARTI+S+S I  A V I +P    F +  A PTAS+++
Sbjct: 120 E-FGATDAEQRVKFQRALEGELARTIESLSSIQKATVRIAIPKESVFTERQALPTASIVV 178

Query: 178 RAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSI 233
                     K    I++LVAA+V NL   +V +++  G  L   + E   + + + +  
Sbjct: 179 ELKPGVSLNAKQIFGIKNLVAASVTNLSTENVKIVNQDGVALGDEDGEFDSDAIAQQIRY 238

Query: 234 VQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292
            +  ++  E  I   LA  + G D   + V  + + D +  +  VYDP++ V     + +
Sbjct: 239 KREFENNYEQKIVNVLAPIVGGADKVVAKVNIDFDFDKKDTKSEVYDPNNVVRSESNIEE 298

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
             Q S  ++         N+  V        +  E  +K  +Q+NYEI+ K         
Sbjct: 299 KRQGSAPNEVGGVPGAVSNIGPVQGLDDSTLK--EQYNKSSQQTNYEISKKVTNVKGQFA 356

Query: 353 KLERLSIAVVVN------KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
            + R+S AVV++      K +  +  G              I  ++  + G N  RGD +
Sbjct: 357 SINRVSAAVVIDGLYQSKKDKDGKPTGELEFAPLTKEQRESITNLIKQSIGYNQNRGDEV 416

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
           ++ + +F   +  ++G     FM+    +    +  L ++   LL+       +      
Sbjct: 417 SLDNFEFKTGKDVSTGEKMDGFMN---NYVMPFLPLLKYIFAALLLYIFYKKVIVPFMQK 473

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLM--------PNDNIALDSSNQDIFSHSRNLQSR 518
              +  E   ++      I       L           + + L     +       L  +
Sbjct: 474 MLEETKEEEEQAQDDLEEIEMDAEDTLEKFKAARKKVEEQLGLSGEFNEDELKYDVLLEK 533

Query: 519 INSYVSKQSDL---RLLHMIEINEE 540
           +   V+++S+     L  M++ + E
Sbjct: 534 MKIVVTERSEEISNLLQDMVKNDSE 558


>gi|74055034|gb|AAZ95839.1| FliF [Aeromonas hydrophila]
          Length = 570

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 105/555 (18%), Positives = 211/555 (38%), Gaps = 31/555 (5%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           F S T + R   LIL   I + I +F+    +   P    L       ++      L + 
Sbjct: 31  FLSNTDVLRQITLILGLAICLAIAVFIL--LWGKEPDMRPLGT-YSTQELVSTLDYLDQQ 87

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS--SNSGYELFDKVNSFGLTSFMQE 128
            I + +   G S+ V +      R+ L   GL +++  SN G  +  K +SFG++  M+ 
Sbjct: 88  KIPYEVE--GKSVLVSAEKYADIRLRLTRAGLATNTDASNDGESILLKDSSFGVSQRMET 145

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV-YKS 187
                + E ++A  I+    +  A+V + +P    F +   +P+A+V++     ++    
Sbjct: 146 ERLKLSRERQLASAIEQFQNVAKAQVLLAIPKDNVFARNERKPSATVVLNLKGNALGQGE 205

Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNI 245
            ++I  +VA+AV  L+   VTV D  G+LL +   +       K  ++ Q  + E +  I
Sbjct: 206 VDSIVDMVASAVHGLEPTRVTVTDQNGRLLNSGSQDPVSAQTRKEFAMQQKQEVEYKQKI 265

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305
           +  L   LG DN+ + V   L+   Q+     Y+PD    RS    ++   S        
Sbjct: 266 DAILIPVLGADNYTAEVDLSLDFSQQEQTRKTYNPDLPAVRSEMTLEEN--SANGSSGGV 323

Query: 306 VTVEQNMPHVSDR--------KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
                N P  +                +     +KE   N+E++T           + R+
Sbjct: 324 PGALSNQPPAASNIPQQATGPNADASAAASGRSRKEATRNFELDTTVSHIRRQMGGIRRM 383

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           +++V V+    T   G+   + +    L  + +++S   G +  RGDT+ + ++ F   +
Sbjct: 384 TVSVAVDYKSATAADGKVTREARTQPELDTLRRLLSGGLGFDVTRGDTLEVVAIPFNRPE 443

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
           L N     +       R    V  A   LV  +L+  +    L+RL   D   +G++   
Sbjct: 444 LENVAEAPIYEQPWFWR---AVRIAASVLVIIVLIVTVVRPMLKRLLYPDARPEGDLDLD 500

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
           + +                        +  +     +    +           +  ++  
Sbjct: 501 NSIVLGGDDELSLLAAQAESEPVFGVRDGHLKLPDLHRDEDL--------LKAVRALVAN 552

Query: 538 NEERFAKILRKWARS 552
             +  A+++++W  +
Sbjct: 553 EPDLAAQVIKEWVTN 567


>gi|269103174|ref|ZP_06155871.1| flagellar M-ring protein FliF [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163072|gb|EEZ41568.1| flagellar M-ring protein FliF [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 581

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 109/556 (19%), Positives = 226/556 (40%), Gaps = 37/556 (6%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
               L R  IL+LA  I V   L +    ++  P    L    E S++  +  AL +  I
Sbjct: 44  GNLDLLRQVILVLAVAICVS--LIIMVMMWIKEPEMRPL-GNYETSELITVLDALDQKKI 100

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
           ++++  +G++I VP+      ++ LA  G  S+    G ++  K   FG++  +++    
Sbjct: 101 EYQL--DGNTIRVPADQYSAIKLTLARDGW-SAPEAQGDDILLKNMGFGVSQRLEQERLK 157

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEA 190
            + E ++AR I+ I  +  A+V + +P    F +     +A+V +   + +       ++
Sbjct: 158 LSRERQLARAIEQIKQVRKAQVLLALPKQSVFVRNNQDASATVFLTLSSGATLGQQEVDS 217

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKA 248
           I  +VA+AVP L    VTV D  G+LL++   + +     K   + +  +  +   I+  
Sbjct: 218 IVDMVASAVPGLKPTRVTVTDQHGRLLSSGTEDPSATAKRKEYELERKQEQTLREKIDAI 277

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308
           L   LG+ N+ S V   ++  + +  +  +DP     RS  + +D   S  ++       
Sbjct: 278 LMPILGLGNYTSQVDVSMDFSSLEETQKQFDPSKPATRSEFILEDLNNS--NRVGGIPGA 335

Query: 309 EQNMPHVSDRKV-------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
             N P                    + +  +EE  NYE++T           + R +++V
Sbjct: 336 LSNQPPADSAIPQDVKDLQSGKSLSDGSVHREETRNYELDTTIRHKRSQTGTIARQTVSV 395

Query: 362 VVNKGRLTEV-LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
            V+   +T+   G+       D+ L +I +++    G +  RGD + + SM F   +   
Sbjct: 396 AVDYKNITDPKTGKVTRVPVSDAELEKIRRLLMGGVGFSQARGDLLEVISMPFALPEELA 455

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG----EVGG 476
                +      S     +  ALV +V  +++      A+R+L   +   +G    E G 
Sbjct: 456 LANPPIWENPNFSSWIRWIAAALVIIVMIIVLI---RPAMRKLLYPNQTAEGIPLDENGV 512

Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536
             +       + + + L   D++ L +S  ++ S  R+          +     +  ++ 
Sbjct: 513 PMLNHHGDGITLIGSDLDAGDSLELSTSQLELPSLHRD----------EDLLKAVRALVA 562

Query: 537 INEERFAKILRKWARS 552
              +  A++++ W   
Sbjct: 563 NEPDLAAQVIKNWMSE 578


>gi|212637769|ref|YP_002314294.1| flagellar MS-ring protein [Shewanella piezotolerans WP3]
 gi|212559253|gb|ACJ31707.1| Flagellar FliF M-ring protein [Shewanella piezotolerans WP3]
          Length = 572

 Score =  353 bits (906), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 119/576 (20%), Positives = 226/576 (39%), Gaps = 46/576 (7%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           A L+ L + ++      R     + ++  +     +    +  S  Y  LY   E  D  
Sbjct: 20  AGLNTLKEKWRDFNRGDRQ--AAVLAIFAIVAACVIVLMLWSASQGYRPLYGNQENVDTA 77

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           +I   L    I +R+  +   + V    +G+AR+ LAA+G+  +   SG +  D  +  G
Sbjct: 78  QIIEVLESEGISYRLDASSGLVLVVEDKLGRARMLLAARGV-KAKVPSGMDSLDS-SGIG 135

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAI 180
            + FM++     +LEGE++RTI ++  + +ARVH+ +P    F +     P+ASVM+   
Sbjct: 136 TSQFMEQAKYRYSLEGELSRTIMALKAVRSARVHLAIPKKTLFIRQQPELPSASVMLDLY 195

Query: 181 NPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL----TANEMERNILGKSLSIV 234
           + S    ++ E+I +LVA +V  +    V V+D  G  L    +AN+       + L   
Sbjct: 196 SGSNIQPENIESIVNLVAGSVTGMTPERVQVVDQNGNHLSSAISANKDITQARDRQLKYT 255

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
           Q ++  +    +  L   LG DNF+  V A++N +  +  +   DP S V      +++ 
Sbjct: 256 QELEQSLIGRASSMLQPILGQDNFQVQVSAKVNFNQVEETKESLDPVSVV------TQEN 309

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
           Q S  +  + A+ +   + +      P   +      ++E   +++      T     +L
Sbjct: 310 QSSNETNADMALGIPGALSNQPPAATPEENNNRRNINQKESRQFDVGRSVRHTRFQQMQL 369

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           E LS++V++N          + + G     L +++ +V  A G +  RGD  +I S +F 
Sbjct: 370 ENLSVSVLLNSQA-------AGETGWSQPQLQQLSSMVQDAIGFSQARGDQFSINSFEF- 421

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL-----HNIDDA 469
                 +      F  +      +    L + +G +L   + +  LR L       ++  
Sbjct: 422 ------APITVAQFEPMPWWQGESYQAYLRYFIGAVLGLGMIIFVLRPLVAHLTRTVEYN 475

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS----------RI 519
            K +         PP   + T   + NDN     +  D         S            
Sbjct: 476 LKDDGSNIEPKRIPPADVSPTDLTLNNDNKDDPQAMADKLMGLDKNPSNGEWSSDIGLPA 535

Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
                      L  +      R A+++  W   + E
Sbjct: 536 AGSPLAVKMEHLSLLANQEPARVAEVIGHWISEKDE 571


>gi|56695122|ref|YP_165469.1| flagellar MS-ring protein [Ruegeria pomeroyi DSS-3]
 gi|56676859|gb|AAV93525.1| flagellar M-ring protein FliF [Ruegeria pomeroyi DSS-3]
          Length = 534

 Score =  353 bits (905), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 147/556 (26%), Positives = 238/556 (42%), Gaps = 28/556 (5%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           + Q+   +    SL + +  I+    LV  +  +       SP+   LY  LE      +
Sbjct: 1   MQQIRSVWA---SLDKKKQFIVIGAALVVFLGVLGLTRMAGSPNMQLLYAGLESGSAGEV 57

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
             +L +  + + +   G SI VP++   + R+ LA++GLP++    GYEL D ++ FG T
Sbjct: 58  VRSLEQQGVPYEVR--GGSIYVPAARRDELRLTLASEGLPANGGR-GYELLDSLSGFGTT 114

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
           S M +    RA EGE+ARTI +   +  ARVHI       F++    PTASV +      
Sbjct: 115 SQMFDAAYWRAKEGELARTIVASPHVAQARVHIANSSSNPFQRSIE-PTASVSVVPSGSE 173

Query: 184 VYK-SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242
           V    A AIR+LVA+AV  +    VTV+DS G ++   E   +   +  +       ++ 
Sbjct: 174 VTPAQANAIRYLVASAVSGMVAEGVTVVDSNGNVIGTPETPTSSTSEDRA------QQMR 227

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
             + + + A +G  N    V  +   +T+ IRE  +DP+ +V  S  + + +  S+    
Sbjct: 228 ERVLRLVEARVGRGNAIVEVSLDTVTETESIRERRFDPNGRVAISTDVEERSDASKNQTT 287

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
           +  VTV  N+P           S  +T    E+ NYE++            ++RLS+AV+
Sbjct: 288 D--VTVASNLPD--GDGAVGDESNSSTSATRERVNYEVSETETEILRTPGAIKRLSVAVL 343

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           VN        G S    + +  LA + ++V +A G N  RGD IT+ SM+ L N      
Sbjct: 344 VNGLPGAAQDGSSQFTPRPEEELAALRELVESAVGFNQDRGDVITLKSME-LPNLEPQGT 402

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482
               S +  L+    ++I      + TL+   LGL  +R +          +    +  P
Sbjct: 403 LASSSMLQGLTFDLMSLIQMATLALVTLV---LGLFVVRPILTKPAVSAPLLA---VAPP 456

Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ---SDLRLLHMIEINE 539
           P  S A + G      I   S  Q+    +   Q      +         RL  MI   +
Sbjct: 457 PNQSGAQSAGPALTGEIDDGSPRQNQLPGAATQQRGTVPALVGSSGTPVDRLRAMIGDKQ 516

Query: 540 ERFAKILRKWARSEIE 555
           E   +ILR W     E
Sbjct: 517 EETVEILRSWLEENEE 532


>gi|126730036|ref|ZP_01745848.1| flagellar M-ring protein FliF [Sagittula stellata E-37]
 gi|126709416|gb|EBA08470.1| flagellar M-ring protein FliF [Sagittula stellata E-37]
          Length = 522

 Score =  353 bits (905), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 134/535 (25%), Positives = 232/535 (43%), Gaps = 17/535 (3%)

Query: 22  ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81
           +++L + + + + ++  AR   ++P Y  LY  LE      +  AL    + + I   G 
Sbjct: 1   MVVLGATLAMVLAVWGLARL-ASAPSYSLLYAGLENGAAGDVVKALEARGVQYDIR--GG 57

Query: 82  SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
           +I VP S     R+ LA++GLP++    GYEL D ++ FG TS M +    RA EGE+AR
Sbjct: 58  AIFVPDSDRDGLRLTLASEGLPANGGQ-GYELLDGLSGFGTTSQMFDAAYWRAKEGELAR 116

Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP-SVYKSAEAIRHLVAAAVP 200
           TI S   I +ARVHI       F++    PTAS+ +         + A A+++LVA+AVP
Sbjct: 117 TIVSNPQIASARVHIANSSANPFQRDVT-PTASISVTTTGGTLSAQQARALKYLVASAVP 175

Query: 201 NLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRS 260
            L+   V V+D  G L+ A        G +     A+   +   + + + A +GV N   
Sbjct: 176 GLEPEGVAVIDGKGGLIGAEAEHG--AGPTADDKAAL---LRDRVQRLMEARVGVGNAVV 230

Query: 261 AVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV 320
            V  +   +++ IR   +DP+ +V  S    +   RSE +Q    VTV  N+P       
Sbjct: 231 EVSVDTVTESELIRSRSFDPEGRVVISTDTEESTDRSE-NQGGGNVTVASNLPD--GNAG 287

Query: 321 PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380
               S     +  E+ N+E++  +   T     ++RL++AV+VN     +  G    +  
Sbjct: 288 GGDTSSSQKAETRERVNFEVSETTREITRVPGAIKRLTVAVLVNGTYTEDGNGNQTFEPL 347

Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440
            +  L  +  +V++A G +  RGD IT+ S+ F   +   +G ++      +      + 
Sbjct: 348 PEDELQALRDLVASAVGYDEERGDQITLKSLSFERPEGLGTGPLEPGLFTGVIDTMRLIQ 407

Query: 441 NALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIA 500
             ++ LV  +L  F+    L R    +    G +         P        L    ++ 
Sbjct: 408 MGVLALVALVLGLFVVRPVLARGAGGEAGMAGALPAPGEGDAGPALDGEIEPLGGFGDLP 467

Query: 501 LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           +     D            +S   +    RL ++I+  +    +ILR W   + E
Sbjct: 468 VMGDGPDFSGLGM---VDFDSPPDEDPVDRLRNLIQERKTETVEILRSWLEEDRE 519


>gi|268678860|ref|YP_003303291.1| flagellar M-ring protein FliF [Sulfurospirillum deleyianum DSM
           6946]
 gi|268616891|gb|ACZ11256.1| flagellar M-ring protein FliF [Sulfurospirillum deleyianum DSM
           6946]
          Length = 574

 Score =  352 bits (904), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 138/571 (24%), Positives = 247/571 (43%), Gaps = 31/571 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-----YDNLYVKLEV 57
           +L+Q+    ++ T     + ++ A  I+V I   +    + N+       Y  L+ K   
Sbjct: 6   LLNQIATLIQNLT---LRQKIVSAVSIVVLIGFLVFLMLYKNTSSSSMSGYTILFEKTTA 62

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
            D   I   L +  + +++ D G +I+VP+ MV K RI +AA G+P +S   G+E+FDK 
Sbjct: 63  GDSALIIQQLEKDKVPYKVLDEG-TIAVPNDMVHKQRIAIAALGIPKNSK-VGFEIFDKT 120

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
             FG T F Q+I  +RALEGE+ARTI+S+  I  A VHI +P    F +     TAS+++
Sbjct: 121 E-FGATDFEQKIKYIRALEGELARTIESLGPIANASVHIAIPKESVFAQKQVPATASIVL 179

Query: 178 RAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKSLS 232
                     K    IR+LVAA++ NL   +V++++  G+ L   E    +  ++   + 
Sbjct: 180 NIRQGMALSVKQIVGIRNLVAASIANLPAENVSIVNQDGEPLGDEESNLFQGELVKSQIR 239

Query: 233 IVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
             +  +H IE  I   LA  + GVD   + V  + +   Q     VYDP+S V RS +  
Sbjct: 240 YKKEFEHNIEQKIINVLAPVIGGVDKVNAKVTIDFDFSQQDYVSEVYDPNS-VPRSEQSV 298

Query: 292 KDAQRSETSQP-ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
           ++ +  +  Q          N+  V  + +   +  E   K    +NYEI+ K + +  +
Sbjct: 299 EEKREGKEPQDVGGVPGAISNIGPV--QGLESTKKGETYQKSSTTTNYEISKKVVNSKDE 356

Query: 351 NYKLERLSIAVVVN--KGRLTEVLGRSADQ----GKIDSYLAEINKIVSAATGINSRRGD 404
             K++RL+ AVVV+       +  G   ++          +  I  +V    G N+ RGD
Sbjct: 357 FAKIKRLTAAVVVDGTYKYGLDADGNKKNELEYFPLSKEQMDAIRDVVRQTVGYNATRGD 416

Query: 405 TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
            +T+++++F       +     SFM+ +  +   +   L +++   L+       +    
Sbjct: 417 EVTVSNLEFKPLSSDGTRVPPKSFMEEVLSYLIKLTPLLKYILVAGLLFIFYKKVILPFS 476

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
                 K +     +        +V   L            +D     ++      +   
Sbjct: 477 QKMVETKLDDFEDEVEPIKLEDESVEDTL--EKFKEARKKVEDQLGIGQDFNE--EALKY 532

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIE 555
                +L H+ +   E FA I++   R+E E
Sbjct: 533 DVLLEKLKHIADEKSEDFASIIQSMIRNEGE 563


>gi|260767966|ref|ZP_05876900.1| flagellar M-ring protein FliF [Vibrio furnissii CIP 102972]
 gi|260615996|gb|EEX41181.1| flagellar M-ring protein FliF [Vibrio furnissii CIP 102972]
          Length = 579

 Score =  352 bits (904), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 119/568 (20%), Positives = 235/568 (41%), Gaps = 32/568 (5%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           +L Q + S       R L+L++V+   +   +    + +S  +  LY + E  DV  I  
Sbjct: 30  KLKQLWSSS-----QRNLVLSAVLAAIVAALIVVALWSSSQSFRALYGQQEQFDVGDIVS 84

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L   +I +R+ +    + VP   V + R+ LAA+G+  +   +G +   + +S G + F
Sbjct: 85  VLEAESISYRLQEQNGQVLVPEGEVARVRMLLAAKGI-KAKLPTGLDSLQEDSSLGTSQF 143

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI-GARPTASVMIRAINPSV 184
           M+       LEGE+ RTI +++ +  ARVH+ +P    F +  G  P+ASVM+       
Sbjct: 144 METARYRHGLEGELVRTIIALNAVSNARVHLAIPRQTLFVRQNGEAPSASVMLELKAGED 203

Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAIQH 239
            K    EAI +LV  +V  +    V+V+D  G+LL+A+        +  K L   + ++ 
Sbjct: 204 LKPEQVEAIINLVVGSVTGMKPEFVSVIDQYGRLLSADVASGDSGKVNAKYLDYQKNLEK 263

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           ++       L   +G  NFR  V A+++    +  + + D ++ V ++    ++    + 
Sbjct: 264 QVIQRAADMLTPIVGPSNFRVQVAADMDFSRVEETQEILD-NTPVVQNEHTVQNNSIDQI 322

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           +          N P V+  K P   S  +  + E    Y + +    T +   ++++L++
Sbjct: 323 AL--GIPGSLSNQPPVTGEK-PTQDSQNSNARSEINRQYAVGSSVRRTQYQQGQVKKLNV 379

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           +V++N                 D    EI+ ++  A GI++ RGD++++ S +F   ++ 
Sbjct: 380 SVLLNSAAAPNGT------AWSDQEKTEISAMLMDAVGISAARGDSLSLMSFNFTPIEIE 433

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
              ++       + +    VI  L+     + + F  L  L       D +  E+     
Sbjct: 434 APPSIPWWQDPTVQQPLRYVIGGLL----GMAMIFFVLRPLIMHLTGADRRSQELEFAPP 489

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL----LHMI 535
              P   +  T      ++       +     S  L    +      S L +    L +I
Sbjct: 490 PEEPYYENLQTREEREREDALNRRLEEKGIKASSGLDVSSDMLPPPGSPLEIQLKHLQLI 549

Query: 536 E-INEERFAKILRKWAR-SEIEDRYTQH 561
                ER A++L++W   +E      + 
Sbjct: 550 ANEEPERVAEVLKQWVNVNEHSTVNAEP 577


>gi|163800134|ref|ZP_02194035.1| flagellar M-ring protein [Vibrio sp. AND4]
 gi|159175577|gb|EDP60371.1| flagellar M-ring protein [Vibrio sp. AND4]
          Length = 583

 Score =  352 bits (904), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 123/560 (21%), Positives = 239/560 (42%), Gaps = 37/560 (6%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
            ++ Q + S       R L+L++V+   +   +    + +S  +  LY + E  D+  I 
Sbjct: 33  KKIKQLWSSS-----QRNLVLSAVLAAIVAAIIVVALWSSSQSFRPLYSQQERFDIGEIV 87

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L    I +R+ +    + VP   V + R+ LA++G+  +   +G +   + +S G + 
Sbjct: 88  SVLESEGISYRMQEQNGQVLVPEGEVARIRMLLASKGV-KAKLPTGLDSLKEDSSLGTSQ 146

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAINPS 183
           FM+       LEGE+ RTI S++ I  ARVH+ +P    F +     P+ASVM+      
Sbjct: 147 FMETARYRHGLEGELVRTIMSLNSIANARVHLAIPRQTLFVRQNTENPSASVMLELKPGE 206

Query: 184 VYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIVQAIQ 238
             K    EAI +LV  +V  +    V+V+D  G+LL+A+           K L   ++++
Sbjct: 207 DLKSEQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLSADIASAEAGKVNAKYLEYQKSVE 266

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
            +I       L   +G  NFR  V A++N    +  + + D ++ V R+    ++    +
Sbjct: 267 KQIIQRAADMLTPIVGPSNFRVQVAADMNFSQIEETQEILD-NAPVVRNEHTIQNNSIDQ 325

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
            +          N P V+  + P   S  +  + E    Y + +    T +   ++E+LS
Sbjct: 326 IAL--GIPGSLSNQPPVT-GEAPTNDSQNSNARSEVNRQYAVGSSVRRTQYQQGQVEKLS 382

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           ++V++N     + +         ++  ++I+ ++  A GI+  RGD++++ S +F   + 
Sbjct: 383 VSVLLNSKVAPDGV------AWSEAEKSQISTMIMDAAGISDARGDSLSLMSFNFTPIE- 435

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL---HNIDDAKKGEVG 475
           F++ +    + D       TV   L +++G +L   +    LR L       D    E+ 
Sbjct: 436 FDAPSAMPWWQD------PTVQQPLRYVIGGVLGLAMIFFVLRPLIMHLTGADKPVQELE 489

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL---- 531
                  P   +  T   +  + +     ++   + S  L           S L +    
Sbjct: 490 FAEPQEEPQYDNIQTREELEREELLNRKLSERGIAVSSGLDVSNEMLPPAGSPLEIQLKH 549

Query: 532 LHMIE-INEERFAKILRKWA 550
           L +I     ER A+IL++W 
Sbjct: 550 LQLIANEEPERVAEILKQWV 569


>gi|85711042|ref|ZP_01042102.1| flagellar M-ring protein [Idiomarina baltica OS145]
 gi|85694955|gb|EAQ32893.1| flagellar M-ring protein [Idiomarina baltica OS145]
          Length = 570

 Score =  352 bits (903), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 124/566 (21%), Positives = 228/566 (40%), Gaps = 39/566 (6%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           +I+D+L  F      + R  ++ILA  I V I +F+    +     +  L  K+E   + 
Sbjct: 29  SIVDKLANF-----DMLRQVVVILALAICVAIAIFI--MLWAQESTFRPL-AKMETEQLV 80

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSS-SSNSGYELFDKVNSF 120
                L   NI++++  +G+ +SVP       ++ L   G+    S ++G ++      F
Sbjct: 81  GTLDYLDANNIEYKV--DGNVVSVPEENYDAVKLQLTRAGVDYGQSESNGSDILMSEPGF 138

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           G++  ++    + + E ++AR I+ +  + AARV + +P    F +   +P ASVM+   
Sbjct: 139 GVSQRLERERLIHSREIQLARAIEEMRAVSAARVLLAVPKENVFARREKQPKASVMLNVK 198

Query: 181 NPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIV--QA 236
                  +   +I  +VA++V +L+   VTV D  G+LL +          S      + 
Sbjct: 199 GNQSLSEEEIASIVDMVASSVTSLETSQVTVTDQNGRLLNSGSQSALAATNSREYQLERK 258

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
            + E    I+  L   LG DN+ + V   ++    +  + +Y+PD    RS    ++  R
Sbjct: 259 REEEYLNKIDSILIPVLGYDNYTAQVDVTMDFTQSEKTQRLYNPDMPAIRSEMTVEN--R 316

Query: 297 SETSQPESAVTVEQNMPHVSDR------KVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
           S  +          N P +              R    +  +E   NYE++     T   
Sbjct: 317 SAGTAVGGIPGALSNQPPLESNIPEQATGAGSQRDATGSMHREATRNYELDNTVSYTRSQ 376

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
           +  +ERLS++V VN+   T   G    Q      LA I +++    G +  RGDTI + S
Sbjct: 377 SGTIERLSVSVAVNQPMTTNADGEQVPQPASPEQLANIRRLLQGGIGFDLSRGDTIEVVS 436

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           + F +     +G   +       R    V+  LV LV  L V       L++L N    +
Sbjct: 437 VPFAQLPDLGAGETAMWDEPWFWRAARLVMGGLVILVLILAV---VRPMLKKLINP--TQ 491

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV---SKQS 527
           + E    S+L            +M ++ I L SS  D  S        +        +  
Sbjct: 492 ELEDDAHSMLE--------DDEMMGDETIDLLSSQFDESSVGFGPDGSLQLPDLHKDEDL 543

Query: 528 DLRLLHMIEINEERFAKILRKWARSE 553
              +  ++    E  +++++ W   +
Sbjct: 544 LKAVRALVANEPELSSQVVKAWLNED 569


>gi|145297444|ref|YP_001140285.1| flagellar MS-ring protein [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142850216|gb|ABO88537.1| lateral flagellar M-ring protein [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 584

 Score =  352 bits (903), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 129/577 (22%), Positives = 239/577 (41%), Gaps = 31/577 (5%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLF-MAARFFVNSPHYDNLYVKLEVSDV 60
           +   ++ +  ++  SL R    IL   +L  I+   +    + +S +Y  LY K E+ D 
Sbjct: 15  SFRTRVQEGLRNWRSLSRDNKSILTIALLAAIVAGTIVVILWTSSKNYVPLYGKQELYDT 74

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L +  + FR+  +   I VP S +   R+ LAA+G+  ++  SG E  D V   
Sbjct: 75  ANIMEMLEKEQVPFRLEKSSGQILVPESQLAHVRMALAARGV-RAAMPSGLEGLDTVTGL 133

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRA 179
           G + FM+      ALEGE+ARTI S+  + +ARVH+ +P    F  +   +P+ASVM+  
Sbjct: 134 GTSEFMEGARYRHALEGELARTIISLDAVRSARVHLAIPKRTLFVGRDEEKPSASVMMDL 193

Query: 180 INPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK----SLSI 233
                 +    EAI +LVA ++  +  G VT++D  G+LL+A   ++   GK     +  
Sbjct: 194 QPGQAMEPGQVEAIANLVAGSISGMKPGAVTIVDQAGQLLSAELGDKAGFGKQSVQQMEY 253

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293
           V+ ++  I    +  L   LG  NFR  + A++N +  +  +   DP   V +    S  
Sbjct: 254 VRKLEQYIRQRASDMLYPMLGTSNFRVQIAADVNFNAVEETQQQLDPQGVVTKESTKSDK 313

Query: 294 AQRS---------ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKS 344
              +             PE+    EQ   +  +      ++   T+++E    YE +   
Sbjct: 314 TIDALALGIPGALSNRPPETTPKNEQPAQNQVEANTDTQKNDSRTERQEVSKQYENSRTI 373

Query: 345 IATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD 404
           + T +   +LE++++++++N+    +        G     L +I ++V  + G ++ RGD
Sbjct: 374 VHTRYQQGRLEKMNVSILLNQQSAPK-------DGWSAEQLEQIRQMVERSVGFDNARGD 426

Query: 405 TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
            I++   DF                         ++  L+ L          +  L R  
Sbjct: 427 QISLQVFDFTAAVPIVPPESGWWETPYWQDSLRYLVGGLLGLTLVFFGIRPLVKHLVRTQ 486

Query: 465 NIDDAKKGEVGGK------SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
            + D +  E   +       +       +A+T  +M N  I  D+  +  FS        
Sbjct: 487 QLPDEEPTEEQDEPQEPTVGLSMRRDDDAALTAPMMSNGLIRADNQMEPQFSSLNLEALP 546

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
                 +     L  ++E +  R A+++R W     +
Sbjct: 547 EPGSELEVQLQHLQLLVEKDTARVAEVVRSWVSGNEQ 583


>gi|110677673|ref|YP_680680.1| flagellar MS-ring protein [Roseobacter denitrificans OCh 114]
 gi|109453789|gb|ABG29994.1| flagellar M-ring protein FliF, putative [Roseobacter denitrificans
           OCh 114]
          Length = 540

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 149/555 (26%), Positives = 242/555 (43%), Gaps = 21/555 (3%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           + Q   + T L   R +I+A          +A      +P+   LY  LE      +  A
Sbjct: 1   MQQIVTAWTGLPLRRQVIVALATGAMFFAILAMSRMATAPNMTLLYAGLENGAAGDVVAA 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L +    F +   G SI V SS   + R+ LA++GLP++S+  GYEL D ++ FG TS M
Sbjct: 61  LEQRGAVFEVR--GGSIFVDSSQRDELRMTLASEGLPANSTQ-GYELLDTLSGFGTTSQM 117

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS-VY 185
            +    RA EGE+ARTI S   I  ARVHI       F++ G  P ASV +     +   
Sbjct: 118 FDAAYWRAKEGELARTIVSSPHISMARVHIASTGSNPFQR-GVTPKASVSVTPSGAAITP 176

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNI 245
           +  +AIR LV++AV  L   DV V+D+ G L+   +     +G            ++  +
Sbjct: 177 QQGKAIRFLVSSAVAGLASEDVAVIDANGALIGNADEVAPTIGGEDKA-----DVLKARV 231

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305
            + L A +G  N    V  +   +++ IRE ++DP+S+V  S    ++   S +      
Sbjct: 232 QRLLEARVGFGNSVVEVSVDTVTESEAIRERIFDPESRVAISTDT-EERNTSSSEAGGGD 290

Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365
           VTV  N+P           S    ++  E+ NYE++        +   ++R+++AV+VN+
Sbjct: 291 VTVASNLPDQ--DGAGGENSSSQNNETRERVNYEVSETEREILREPGAIKRVTVAVLVNE 348

Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425
             +T+  G+     + +S L  +  +V++A G +  RGD ITI SM      L  +    
Sbjct: 349 MTITDEAGQETVTPRDESELEALRDLVASAVGFDEARGDIITIKSMGLQSVPLQGTAAG- 407

Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD-AKKGEVGGKSILSPPP 484
                ++S     V++A+   +  L+   LGL  +R L   +D      V      +   
Sbjct: 408 ---TSLMSNFNIDVMSAIQMAILALVTLILGLFVVRPLLARNDLNDAPAVAALPGATDGE 464

Query: 485 ISSAVTTGLMPNDNIALDSSN--QDIFSHSRNLQS-RINSYVSKQSDLRLLHMIEINEER 541
                  G +  D+  L       D    S  L    I S +S+    RL  MI   ++ 
Sbjct: 465 TDGLGLDGEIDGDDFQLPDLPVISDFGDASGELPDLNIGSGMSEDPVDRLRTMIGERQDE 524

Query: 542 FAKILRKWARSEIED 556
             +ILR W   + E 
Sbjct: 525 TVEILRSWLEDKEES 539


>gi|34558286|ref|NP_908101.1| flagellar MS-ring protein [Wolinella succinogenes DSM 1740]
 gi|34484005|emb|CAE11001.1| FLAGELLAR BASAL-BODY M-RING PROTEIN FLIF [Wolinella succinogenes]
          Length = 577

 Score =  352 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 119/571 (20%), Positives = 236/571 (41%), Gaps = 35/571 (6%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNS----PHYDNLYVKLEVS 58
           + +Q+   +       + +++IL +++ V   +     +          Y  L+  +   
Sbjct: 6   LFNQIQNLYAKLN--LKQKLVILGTIVGVVAFVSFLIVYNGGKGKSLDGYAVLFEGVSPQ 63

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
           D   I   L ++ I +++  + ++I +P   V + RI LA+ G+P SS   G+E+FDK  
Sbjct: 64  DGALIIQHLEQSKIPYKLPKD-NTILIPEEKVYEERIKLASSGIPKSSK-VGFEIFDKQE 121

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178
            FG T F Q++  VRA EGE++RTI+S++ I  A VHI +P    F      PTASV++R
Sbjct: 122 -FGATDFDQKVKFVRATEGELSRTIESLTPIEKASVHIAIPKDSVFVSKETPPTASVVLR 180

Query: 179 AINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLSI 233
                         I++LVAAA+  L+  +V +++  G+ L   +     + +    +  
Sbjct: 181 LRPNMALTPAQVLGIKNLVAAAITRLEPENVRIVNENGEPLGEGDELTTSKEMAAVQMRY 240

Query: 234 VQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292
            Q  +  +E  I   LA  + G D   + V AE +   +Q  + ++DP++ V     L +
Sbjct: 241 KQNFERSVEEKIVNILAPIIGGADRVVAKVTAEFDFSQKQSTQELFDPNNVVRSEQTLEE 300

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
             +  +  +         N+  V  + +      +  +K +  +N+EI+    +   +  
Sbjct: 301 KREGFKPKEIGGVPGAVSNIGPV--QGLDSQDVRDKYEKSQTTTNFEISKTVSSIKGEFA 358

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQ----GKIDSYLAEINKIVSAATGINSRRGDTITI 408
            ++RLS AVVV+    T V  +  +        D  + +IN +V  A G +  RGD  T+
Sbjct: 359 TIKRLSAAVVVDGKYKTSVNEQGNEVLEYIPLSDEEMEKINGLVRQAMGFSGTRGDEATV 418

Query: 409 TSMDF-LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR----RL 463
           ++ +F  ++  +   T    F+  L +     +  L +++  L++       +     R+
Sbjct: 419 SNFEFDAKSAGYAPKTPVERFVQGLEKFMGPFMPMLKYVIVGLILFVFYKKIIVPFAERM 478

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
             + + +  E+     L      +      M             +          +    
Sbjct: 479 LEVHEDEDEEIESLIKLDDDDEDALNKFNEMKRRVEEQLGLGSGLSEDEIKYDVLLE--- 535

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEI 554
                 ++ ++     E  A I +   R E+
Sbjct: 536 ------KMKNIAMEKPEEVAGIFQTLIRDEL 560


>gi|258622516|ref|ZP_05717538.1| flagellar M-ring protein [Vibrio mimicus VM573]
 gi|258585216|gb|EEW09943.1| flagellar M-ring protein [Vibrio mimicus VM573]
          Length = 585

 Score =  352 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 116/565 (20%), Positives = 236/565 (41%), Gaps = 39/565 (6%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            ++D+L Q + S       R L+L++V+   +   +    + +  ++  LY + E  D+ 
Sbjct: 30  KLIDKLKQLWSSS-----QRNLVLSAVLAAIVAAIIVVALWSSVQNFRPLYSQQERFDIG 84

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L    I +R+ +    + V    V + R+ LA +G+  +   +G++   + +S G
Sbjct: 85  EIVSVLESEGISYRMQEENGQVLVQEGEVARIRMLLATKGV-KAKLPTGFDSLKEDSSLG 143

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG-ARPTASVMIRAI 180
            + FM+       LEGE+ RTI S++ +  ARVH+ +P+   F +     P+ASV++   
Sbjct: 144 TSQFMETARYRHGLEGELVRTILSLNAVTNARVHLAIPNQTLFVRQNRENPSASVLLELK 203

Query: 181 NPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQ 235
                K    EAI +LV  +V  +    V+V+D  G+LL+A+     E  +  K L   +
Sbjct: 204 PGKNLKPQQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLSADVTSAAEGEVNAKYLEYQK 263

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            ++ +I       L   +G  NFR  V A+++    +  E + D D+ V R     ++  
Sbjct: 264 NVEKQIIQRAADMLTPIVGPTNFRIQVAADMDFSQVEETEEILD-DTPVVRDEHTIQNNS 322

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPR--SLENTDKKEEQSNYEINTKSIATTHDNYK 353
             + +          N P ++ +        S     + E    Y + +    T +   +
Sbjct: 323 VDQIAL--GVPGSLSNQPPITGKAGEKQTKDSQNTNARSEVNRQYAVGSNIRRTQYQQGQ 380

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           +++LS++V++N             +    +   +I+ +V  A G++  RGD++++ S +F
Sbjct: 381 IKKLSVSVLLNSQAAPNG------KAWTSAEKKQISTMVMDAVGVSQGRGDSLSLMSFNF 434

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL--------RRLHN 465
               +  + T+       + +    VI  ++     + + F  L  L        RR+  
Sbjct: 435 TPIDIEAAPTIPWWQDPTVQQPMRYVIGGML----GIAMIFFVLRPLIMHLTGADRRVQE 490

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
           ++ A++ E+  +++ +               +     SS  DI S    L         +
Sbjct: 491 LEFAEQEELIDENLQTREESEREEALNRRLLEKGIAASSGLDIASDMLPLP----GSPLE 546

Query: 526 QSDLRLLHMIEINEERFAKILRKWA 550
                L  +     ER A++L++W 
Sbjct: 547 IQLKHLQLIANEEPERVAEVLKQWV 571


>gi|302389658|ref|YP_003825479.1| flagellar M-ring protein FliF [Thermosediminibacter oceani DSM
           16646]
 gi|302200286|gb|ADL07856.1| flagellar M-ring protein FliF [Thermosediminibacter oceani DSM
           16646]
          Length = 517

 Score =  352 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 124/566 (21%), Positives = 224/566 (39%), Gaps = 68/566 (12%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            +  Q+ +F+ S   + +  +++ A ++++   L     +F++ P Y  L+  L + D  
Sbjct: 6   KLKHQVSEFWNSRNKVQKISLILGALLVILTAGLLG---YFISRPSYSPLFTNLSMQDAG 62

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L +  I ++I+D G +I V S  V K R++LA +GLP        ++F+K    G
Sbjct: 63  EIVKRLEDMKIPYKIADGGKTILVESKDVYKTRLNLAQEGLPKGGVLGFSDIFNKT-KLG 121

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI--GARPTASVMIRA 179
            T + +++   +AL+GE+ RTI+ +  + +ARVHIV P    F +      P+A+V ++ 
Sbjct: 122 TTDWERQLQYTQALQGELTRTIEEMEQVESARVHIVQPRESLFIEPNAQKEPSAAVFLKL 181

Query: 180 INP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL-----LTANEMERNILGKSLS 232
                   +    I +LVA +V  L   ++T++D  G++     L+  +  +  +   L 
Sbjct: 182 KPGVEIAEEEIRGIINLVAHSVEGLKPENITIVDEFGRVLSNIPLSEEQNTKEEINSQLV 241

Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS-----KVERS 287
           I    Q +++ N+   L    G  N    V A+LN D + +   ++ P S      + RS
Sbjct: 242 IQNNFQKQLQANVQSLLEQIFGPGNVAVRVNAQLNFDKKTVESRLFTPVSSETGDGILRS 301

Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
           ++  ++      S P        N+P     + P      N  K E   NYE+N      
Sbjct: 302 VQELREHFSGTGSVPTGNPGTGTNIPGY---QQPNTNGTSNYQKTEVIRNYEMNESKENV 358

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
           T     +++L+++VVVN+                D    +I  +V  A G + +R D IT
Sbjct: 359 TVAPGTVKKLTVSVVVNRD-------------LNDEEKDKIATLVGNAIGYDIQR-DQIT 404

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           +  M F                DILS+  A                       RR     
Sbjct: 405 VEGMTFNNQ-----------LADILSKQLAEENQ-------------------RREMQRL 434

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
                 +    +        A+    M  + +A + +     +   +     ++      
Sbjct: 435 LIIISAIAAAILFIIAHRIIAMKRRRMEEEKLAYELAAAQQAASQLSDDVSADNREVFSE 494

Query: 528 DLRLLHMIEINEERFAKILRKWARSE 553
             +L        E  AKILR W   E
Sbjct: 495 IEKLAR---KRPEDVAKILRTWLNEE 517


>gi|289548426|ref|YP_003473414.1| flagellar M-ring protein FliF [Thermocrinis albus DSM 14484]
 gi|289182043|gb|ADC89287.1| flagellar M-ring protein FliF [Thermocrinis albus DSM 14484]
          Length = 496

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 137/555 (24%), Positives = 235/555 (42%), Gaps = 64/555 (11%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M     L +       L   + LIL+  +   ++  +      +S  Y  LY  L   D+
Sbjct: 1   MDYRTLLRELKTKIEQLSTKQKLILSGAVAAGLISLLLMVLLASSARYVPLYSGLSQEDM 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           + +   L +  + +++  +G S+ VP   V   R+ LAA+G+PS     GYE+FDK N F
Sbjct: 61  SAVLSELEKEGVPYKLGGDGRSVLVPEDKVRDIRLKLAAKGIPSKGV-VGYEIFDKSN-F 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
            ++ F  ++   RA+EGE+A+TI  I G+  A+V+I MP    F +   +PTASV++R  
Sbjct: 119 AVSDFQNQVNFKRAVEGELAKTIMRIQGVEEAKVNIGMPQRSIFVREEEQPTASVLVRLK 178

Query: 181 NP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQAI 237
                  +  +AIR+LVA +VP LD  +V V+D  G+ LT+    E ++  + L I +  
Sbjct: 179 PGYELSPEQVKAIRNLVALSVPRLDPKNVVVIDDRGRDLTSLLGEEMDLTERELRIKREY 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           + ++E  + K L   LGV N +  V A++++  ++ +E +YDPD     S +  K+    
Sbjct: 239 EEQVEKKLQKILEEALGVGNVKVRVSADIDLTRRESKEEIYDPDMTAVVSQQKKKERVLG 298

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
            T           N+P  +            +++ E  +NYE++ K I T     K+ RL
Sbjct: 299 GTL--GGVPGTASNIPPATGVGAGGQTL---SERTETITNYEVSKKQIYTEEPLVKVRRL 353

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           S+ VVVN                 +  L  I ++V  A GI+ RRGDTI++ ++ F    
Sbjct: 354 SVGVVVNSQ-------------LKNVNLDSIRELVQTAAGIDQRRGDTISVVAVPFHRPT 400

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
           L      +        R +   I   V +   L+ + L     R+   +           
Sbjct: 401 LGEEKAKE--------RVYWPYIVGGVLIASLLVFSLLVFMRRRKQVPLPTPPTAVPPVP 452

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
                           M  + I + +                           +  + + 
Sbjct: 453 E--------------TMVTEEIRVKAKEVASLEA-------------------VAELAKQ 479

Query: 538 NEERFAKILRKWARS 552
             ++ AKI++ W RS
Sbjct: 480 EPQKVAKIIKSWLRS 494


>gi|262173382|ref|ZP_06041059.1| flagellar M-ring protein FliF [Vibrio mimicus MB-451]
 gi|261890740|gb|EEY36727.1| flagellar M-ring protein FliF [Vibrio mimicus MB-451]
          Length = 585

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 115/565 (20%), Positives = 236/565 (41%), Gaps = 39/565 (6%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            ++++L Q + S       R L+L++V+   +   +    + +  ++  LY + E  D+ 
Sbjct: 30  KLINKLKQLWSSS-----QRNLVLSAVLAAIVAAIIVVALWSSVQNFRPLYSQQERFDIG 84

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L    I +R+ +    + V    V + R+ LA +G+  +   +G++   + +S G
Sbjct: 85  EIVSVLESEGISYRMQEENGQVLVQEGEVARIRMLLATKGV-KAKLPTGFDSLKEDSSLG 143

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG-ARPTASVMIRAI 180
            + FM+       LEGE+ RTI S++ +  ARVH+ +P+   F +     P+ASV++   
Sbjct: 144 TSQFMETARYRHGLEGELVRTILSLNAVTNARVHLAIPNQTLFVRQNRENPSASVLLELK 203

Query: 181 NPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQ 235
                K    EAI +LV  +V  +    V+V+D  G+LL+A+     E  +  K L   +
Sbjct: 204 PGKNLKPQQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLSADVTSAAEGKVNAKYLEYQK 263

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            ++ +I       L   +G  NFR  V A+++    +  E + D D+ V R     ++  
Sbjct: 264 NVEKQIIQRAADMLTPIVGPTNFRIQVAADMDFSQVEETEEILD-DTPVVRDEHTIQNNS 322

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPR--SLENTDKKEEQSNYEINTKSIATTHDNYK 353
             + +          N P ++ +        S     + E    Y + +    T +   +
Sbjct: 323 VDQIAL--GVPGSLSNQPPITGKAGEKQTKDSQNTNARSEVNRQYAVGSNIRRTQYQQGQ 380

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           +++LS++V++N             +    +   +I+ +V  A G++  RGD++++ S +F
Sbjct: 381 IKKLSVSVLLNSQAAPNG------KAWTSAEKKQISTMVMDAVGVSQGRGDSLSLMSFNF 434

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL--------RRLHN 465
               +  + T+       + +    VI  ++     + + F  L  L        RR+  
Sbjct: 435 TPIDIEAAPTIPWWQDPTVQQPMRYVIGGML----GIAMIFFVLRPLIMHLTGADRRVQE 490

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
           ++ A++ E+  +++ +               +     SS  DI S    L         +
Sbjct: 491 LEFAEQEELIDENLQTREESEREEALNRRLLEKGIAASSGLDIASDMLPLP----GSPLE 546

Query: 526 QSDLRLLHMIEINEERFAKILRKWA 550
                L  +     ER A++L++W 
Sbjct: 547 IQLKHLQLIANEEPERVAEVLKQWV 571


>gi|224370787|ref|YP_002604951.1| FliF [Desulfobacterium autotrophicum HRM2]
 gi|223693504|gb|ACN16787.1| FliF [Desulfobacterium autotrophicum HRM2]
          Length = 571

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 130/581 (22%), Positives = 241/581 (41%), Gaps = 41/581 (7%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +++Q +  +K    +   R +++  V+L     F A   + N   Y + Y  L   D   
Sbjct: 4   LVEQTINLYK---EMPLARKILMGVVVLAMFGGFAAMFIWANKTEYKSAYSGLNQEDAAA 60

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L  A   +RI   G++I VP+  V   R+ +A  G+P  S   G+E+FDK + FG 
Sbjct: 61  IVDRLKTAKTPYRIEAGGATIMVPADQVYDVRLSMAKDGIPKGSG-VGFEIFDKTD-FGT 118

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T F+Q+I R RA++GE+ARTI++   +  ARV IV P    F +   +P+AS+++   + 
Sbjct: 119 TEFVQKINRRRAIQGELARTIRAFDEVKDARVMIVFPKDSVFVEETKKPSASILLELKSD 178

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--------RNILGKSLSIV 234
                  A+ HLVA+A+ +L    VT++D+TG++L   + E        RN+        
Sbjct: 179 LSEDKVAAVAHLVASAIEDLTPKLVTIVDTTGRILFEGKSEEEKAKIDARNLADSQYKYK 238

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLS 291
              +  +   I   L   +G D     V AE++  T    E +YDP   ++   RS ++ 
Sbjct: 239 MRYETTLAERIQTMLERIVGKDKAIVRVTAEMDFSTSNTNEEIYDPFERETTFVRSKQIL 298

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
            +  ++         +V   +P           ++E TDKK +  NYE++ ++  T    
Sbjct: 299 AETGQTRQDSAGIPSSVNPVVPP---GGTADASAMEMTDKKNDTINYELSRRTRQTIKPM 355

Query: 352 YKLERLSIAVVVNKGRLTEVLGRS----ADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
             ++R+S+A VV+     +             +    + + + IV  A G N  R D ++
Sbjct: 356 AVVQRVSVAAVVDGKYEFKTDDSGNRSKTYVPRSQVEMQQFSDIVVKAMGFNETRQDQVS 415

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           +    F           +++    + + +   I  ++ ++         L  +R +    
Sbjct: 416 MECFPFASIDELGVVEPELTGWRAVQKAYGRTIANILLVILL------FLFVIRPIIKTF 469

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
              +  V  +++           T   P   + +D+  Q  F    + ++R        S
Sbjct: 470 QGIQSTVEKETLPGGGIDIIEDGTEPQPLAFVDMDADEQRTFLDEMDKEARDAYIDKMNS 529

Query: 528 DLRLLHMIEIN-EERFA-----------KILRKWARSEIED 556
           + R  +M  I   E+ A            I++ W     E+
Sbjct: 530 EERAAYMNNIKIPEKAAYYARKDVIKATNIIKVWLSEVEEE 570


>gi|330828799|ref|YP_004391751.1| flagellar M-ring protein FliF [Aeromonas veronii B565]
 gi|328803935|gb|AEB49134.1| Flagellar M-ring protein FliF [Aeromonas veronii B565]
          Length = 569

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 105/552 (19%), Positives = 219/552 (39%), Gaps = 26/552 (4%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           F S T + R   LIL   I + I +F+    +   P    L       ++ +    L + 
Sbjct: 31  FLSNTDVLRQITLILGLAICLAIAVFIL--LWGKEPDMRPLGT-YTTQELVKTLDFLDQQ 87

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSS--SSNSGYELFDKVNSFGLTSFMQE 128
            I + +  +G S+ V +      ++ L   GL ++  S+  G ++  K +SFG++  M+ 
Sbjct: 88  KIPYEV--DGKSVLVNAESYPTIQLALTRAGLANATDSNIGGEDILLKDSSFGVSQRMES 145

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV-YKS 187
                + E ++A  I+    +  A+V + +P    F +   +P+A+V++     ++    
Sbjct: 146 ERLKLSRERQLASAIEQFQNVAKAQVLLAIPKDNVFARNERKPSATVVLNLKGAALGQGE 205

Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNI 245
            ++I  +VA+AV  L+   VTV D  G+LL +   +       K  ++ Q  + E +  I
Sbjct: 206 VDSIVDMVASAVHGLEPTRVTVTDQNGRLLNSGSQDPISAQTRKEFAMQQKQELEYKQKI 265

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP--- 302
           +  L   LG DN+ + V   L+   Q+     Y+PD    RS    ++   S ++     
Sbjct: 266 DAILIPVLGADNYTAEVDLSLDFSQQEQTRKTYNPDLPAVRSEMTMEENSASGSNGGVPG 325

Query: 303 --ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
              +      N+P  +        +     +KE   N+E++T    T      + R++++
Sbjct: 326 ALSNQPPAASNIPEEATGGDGASAAASGRSRKEATRNFELDTTVSHTRRQMGGIRRMTVS 385

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           V V+   +    G    + +  + L  + +++S   G +  RGDT+ + ++ F   +L  
Sbjct: 386 VAVDYKAVPGADGAVTREARTQAELDTLRRLLSGGLGFDVTRGDTLEVVAIPFNRPELDT 445

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
              V +       R    V  A   LV  +L+  +    L+RL   D   +GEV   +  
Sbjct: 446 VAEVPLYDQPWFWR---AVRIAASVLVIIVLIVTVVRPMLKRLLYPDAKPEGEVDFDNHT 502

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
                           ++      +  +     +    +           +  ++    +
Sbjct: 503 VLGGDDELSLLSAQVENDQVFGVRDGQLKLPDLHRDEDL--------LKAVRALVANEPD 554

Query: 541 RFAKILRKWARS 552
             A+++++W  +
Sbjct: 555 LAAQVIKEWVTN 566


>gi|258624661|ref|ZP_05719596.1| flagellar M-ring protein [Vibrio mimicus VM603]
 gi|258583053|gb|EEW07867.1| flagellar M-ring protein [Vibrio mimicus VM603]
          Length = 585

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 115/566 (20%), Positives = 239/566 (42%), Gaps = 41/566 (7%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            ++D+L Q + S       R L+L++V+   +   +    + +  ++  LY + E  D+ 
Sbjct: 30  KLIDKLKQLWSSS-----QRNLVLSAVLAAIVAAIIVVALWSSVQNFRPLYSQQERFDIG 84

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L    I +R+ +    + V    V + R+ LA +G+  +   +G++   + +S G
Sbjct: 85  EIVSVLESEGISYRMQEENGQVLVQEGEVARIRMLLATKGV-KAKLPTGFDSLKEDSSLG 143

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG-ARPTASVMIRAI 180
            + FM+       LEGE+ RTI S++ +  ARVH+ +P+   F +     P+ASV++   
Sbjct: 144 TSQFMETARYRHGLEGELVRTILSLNAVTNARVHLAIPNQTLFVRQNRENPSASVLLELK 203

Query: 181 NPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQ 235
                K    EAI +LV  +V  +    V+V+D  G+LL+A+     E  +  K L   +
Sbjct: 204 PGKNLKPQQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLSADVTSAAEGKVNAKYLEYQK 263

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            ++ +I       L   +   NFR  V A+++    +  E + D D+ V R     ++  
Sbjct: 264 NVEKQIIQRAADMLTPIVSPTNFRIQVAADMDFSQVEETEEILD-DTPVVRDEHTIQNNS 322

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPR--SLENTDKKEEQSNYEINTKSIATTHDNYK 353
             + +          N P ++ +        S     + E    Y + +    T +   +
Sbjct: 323 VDQIAL--GVPGSLSNQPPITGKAGEKQTKDSQNTNARSEVNRQYAVGSNIRRTQYQQGQ 380

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           +++LS++V++N             +    +   +I+ +V  A G++  RGD++++ S +F
Sbjct: 381 IKKLSVSVLLNSQAAPNG------KAWTSAEKKQISTMVMDAVGVSQGRGDSLSLMSFNF 434

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL--------RRLHN 465
               +  + T+       + +    VI  ++     + + F  L  L        RR+  
Sbjct: 435 TPIDIEAAPTIPWWQDPTVQQPMRYVIGGML----GIAMIFFVLRPLIMHLTGADRRVQE 490

Query: 466 IDDAKKGEVGGKSI-LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
           ++ A++ E+  +++          V    +    IA   ++  +   S  L    +    
Sbjct: 491 LEFAEQEELIDENLQTREESEREEVLNRRLLEKGIA---ASSGLDIASDMLPLPGSPLEI 547

Query: 525 KQSDLRLLHMIEINEERFAKILRKWA 550
           +   L+L  +     ER A++L++W 
Sbjct: 548 QLKHLQL--IANEEPERVAEVLKQWV 571


>gi|163750550|ref|ZP_02157788.1| flagellar M-ring protein [Shewanella benthica KT99]
 gi|161329705|gb|EDQ00694.1| flagellar M-ring protein [Shewanella benthica KT99]
          Length = 567

 Score =  350 bits (899), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 100/535 (18%), Positives = 210/535 (39%), Gaps = 35/535 (6%)

Query: 37  MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIH 96
           +    +   P Y  L  K++  ++ ++   L +  ID+RI  +   I VP       ++ 
Sbjct: 52  VFIMLWAQEPEYRPL-GKMDTQEMVKVLDVLDKNKIDYRIDID--VIKVPEDQYQAVKLM 108

Query: 97  LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHI 156
           L+ +G+  +S ++ Y    + + FG++  M+      + E  +AR I+ +  I  A+V +
Sbjct: 109 LSREGIDGASRSNDY--LSQDSGFGVSQRMELARLKHSQELNLARAIEELRSINRAKVIL 166

Query: 157 VMPDMGSFRKIGARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
            +P    F +  A+P+A+V++      +  +  +A+  +VA+AV  L    VTV DS G+
Sbjct: 167 AIPKENVFARNRAKPSATVVLNVRRGGLGQEEVDAVVDIVASAVQGLIPTRVTVTDSNGR 226

Query: 216 LLTANEME--RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI 273
           LL +   +       +   + Q  + E    +   L   LG +NF S V   ++    + 
Sbjct: 227 LLNSGSQDAVSARARRESDLAQQKEAEYRTKVQSILMPILGPENFTSQVDVTMDFTAVEQ 286

Query: 274 REIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPH--------VSDRKVPLPRS 325
               Y+PD    RS  + ++   S             N P                L  +
Sbjct: 287 TSKRYNPDLPALRSEMIVENN--SNGGSASGIPGALSNQPPMESDIPQNALTTDAQLNSA 344

Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT-EVLGRSADQGKIDSY 384
              +  +E   N+E+NT    T      + R+S++V VN    T    G+     + +  
Sbjct: 345 RRGSSHREATRNFELNTTISHTRQQVGTVRRISVSVAVNYKTGTLGEDGQINRVPRTEQE 404

Query: 385 LAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALV 444
           LA I +++  A G +++RGD + + ++ F++  +      ++       R     +  ++
Sbjct: 405 LANIRRLLEGAVGFSTQRGDVLEVVTVPFMDQLIEELPAPELWEQPWFWRALKLGMGGVI 464

Query: 445 FLVGTLLVTFLGLHALRRLHNIDDAKKGEVG--GKSILSPPPISSAVTTGLM--PNDNIA 500
            L    L+ F+    L+RL         +    G  +       ++ T G++  P    +
Sbjct: 465 ILA---LILFIVRPMLKRLIYPASVNIPDEPKFGDELAEIEDQFASDTLGMLNRPEAEYS 521

Query: 501 LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
                  +          I +         +  ++    E   ++++ W + + +
Sbjct: 522 YADDGSILIPDLHKDDDMIKA---------IRALVANEPELSTQVIKGWLQQDEQ 567


>gi|114764044|ref|ZP_01443283.1| flagellar M-ring protein FliF [Pelagibaca bermudensis HTCC2601]
 gi|114543402|gb|EAU46417.1| flagellar M-ring protein FliF [Roseovarius sp. HTCC2601]
          Length = 546

 Score =  350 bits (899), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 138/556 (24%), Positives = 231/556 (41%), Gaps = 17/556 (3%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +L QL   +    SLG  R +++ +  L  I   +A     + P    LY  LE      
Sbjct: 2   VLQQLATIWG---SLGGRRRVLVIAATLATIAAVLAMGRMASQPSMALLYAGLEQGAAGE 58

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +  AL    I + +   G +I VP       R+ LA++GLP++S N GYEL D ++ FG 
Sbjct: 59  VVAALEARGIPYEVR--GGAILVPDMQRDSLRMTLASEGLPANS-NQGYELLDGLSGFGT 115

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           TS M +    RA EGE+ARTI +   I  ARVHI       F++  + P+AS+ +     
Sbjct: 116 TSQMFDAAYWRAKEGELARTIVASPYIATARVHIANSTANPFQRDVS-PSASISVTTNGD 174

Query: 183 -SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEI 241
                 A A+++LVA+AVP L   DV V+D  G L+ A +      G +     A+   +
Sbjct: 175 VLSPVQARALKYLVASAVPGLMPEDVAVIDGKGGLIGAEDDSG--AGPTAEDRAAL---L 229

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
              + + + A +G+ N    V  +   +++ IR+  +DP+ +V      +++   S    
Sbjct: 230 RDRVQRLVEARVGLGNAVVEVSVDTVTESETIRQRQFDPEGRVVI-STDTEEESSSSQDS 288

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
               V+V  N+P           S   + +  E+ NYE++      T     ++RL++AV
Sbjct: 289 GGGDVSVASNLPD--GEAGGGDSSQSQSSETRERVNYEVSETMREVTRMPGAIKRLTVAV 346

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           +VN        G        +  LA +  +V++A G    RGD ITI SM F   +   +
Sbjct: 347 LVNGTLAAGADGAEQFVPLPEGELAALRDLVASAVGFEEARGDAITIRSMPFERPEGLGT 406

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
           G V+  +  +       +   ++ +V  +L  F+    L            +        
Sbjct: 407 GPVEPGWFSMPLDPMTLIQIGVLAVVALILGLFVVRPILTAPAQAALPGATDGALALPGG 466

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
                 A   G + + +     +               +S   +    RL  +IE  +  
Sbjct: 467 GVEPGGAALDGEIDDGDFGGLPALGGGGDFGGMGMVDFDSPAEEDPVDRLRGLIEERKSE 526

Query: 542 FAKILRKWARSEIEDR 557
             +ILR W   + EDR
Sbjct: 527 TVEILRSWL-DDGEDR 541


>gi|91200223|emb|CAJ73267.1| similar to flagellar MS ring protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 584

 Score =  350 bits (898), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 123/580 (21%), Positives = 241/580 (41%), Gaps = 42/580 (7%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           QL   +K  +    +   I+ S+ L  ++  +    +   P +  LY +L   +   I  
Sbjct: 11  QLKNVWKEISF---SHKFIMISLTLSFLIGIVGVMQWARKPDFGLLYGELSPKESGEIIN 67

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L EANI +RIS NG++I VP+  + + R+  A++GLP     +GYEL DKV  FG + F
Sbjct: 68  HLREANIPYRISGNGTTILVPNDKIYEMRLKFASEGLPHE--QTGYELLDKV-GFGSSDF 124

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
           +Q+I   RA++GE+A+TI+ +  +  A+VH+ +P+   F +    PTASV+++       
Sbjct: 125 IQKINYRRAIQGELAKTIKHLDFVDWAQVHLAIPEKSLFVEDEKPPTASVVLKLKTGGKL 184

Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLSIVQAIQHE 240
           K     +I HLV+++V  L   +VTV D+ G LL+  E    +       L I + I+  
Sbjct: 185 KPERVASIVHLVSSSVEGLIPENVTVTDTRGNLLSEKESPFSQTGASNDQLEIKKKIEEY 244

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
                   L   +G       V A+L+      ++I +DP+ +V +   ++         
Sbjct: 245 YVAKAQDMLDRIVGAGKSVVRVSADLDFRHVDEKQIEFDPERRVPKVQTVTTKVSGGTPF 304

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
                  ++ N+     +   L  S  + +++  Q+ YE++      +     L+RLS+A
Sbjct: 305 SGGGVPGMQANL--NLSQSSMLQSSGSSEEEETAQTQYELSKVERMVSDHGANLKRLSVA 362

Query: 361 VVVNKGRLT----EVLGRSADQGKIDSYLAEINKIVSAATGINS-RRGDTITITSMDFLE 415
           V+V+         +   +     + +  +  I  +V  A G+N   R D+  I ++ F E
Sbjct: 363 VLVDGKYEKIESEDGKIQQTYVSRNNEEMKGIASLVKQALGVNMVSRNDSFEIQNVQFYE 422

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA------ 469
                   +              +       +  L+     L +++++            
Sbjct: 423 ADYAEEEAILKKEQQ--KEFMLKLAKNGSLGITVLMFLMFMLRSMKKIKKKAAPTVEMEH 480

Query: 470 --KKGEVGGKSILSPPPISSAVTTGLMPNDNIA------------LDSSNQDIF--SHSR 513
              KG+ G +         +A    L     I+            L+++ +++     S 
Sbjct: 481 FSAKGKSGKQGFAKMQHDDTAGRNKLFEELRISKERQGIQYTKEELEAAVEEMLAMEESE 540

Query: 514 NLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
           N +  +     ++    +L  ++ + +  +  L++W   E
Sbjct: 541 NPEEIMEGMKREKKRKLILGHMQKDTDLTSTALKRWIEGE 580


>gi|326796470|ref|YP_004314290.1| flagellar M-ring protein FliF [Marinomonas mediterranea MMB-1]
 gi|326547234|gb|ADZ92454.1| flagellar M-ring protein FliF [Marinomonas mediterranea MMB-1]
          Length = 558

 Score =  350 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 121/562 (21%), Positives = 222/562 (39%), Gaps = 36/562 (6%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           ++       L   R L L   +   I + +AA  + + P Y  +   +   + ++I   L
Sbjct: 15  MELLTGFNKLTVIRQLALMVGLAASIAIALAAVLWSSGPDYKPVLSSITDYNADQIVEIL 74

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           +  +I F++  N  ++ V      +AR+ LA  G+  S    G E+ D+  + G + F++
Sbjct: 75  NTNSIPFKLDQNTGALLVEDEYYHQARLKLAGSGIV-SDKIVGLEIMDQDQALGTSQFIE 133

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
                R LEGE++RTI S+  + +ARVH+ +P    F +   +PTASV +          
Sbjct: 134 TARYRRGLEGELSRTITSLQSVKSARVHLAIPKESVFVRDTRKPTASVFLELYPGRRLDR 193

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEM 243
              +AI +LVA+++  L   DVTV+D  G LLT  +    +   GK     + ++  +  
Sbjct: 194 SQVDAIVNLVASSISQLSDKDVTVVDQRGTLLTDKDSSSELSIAGKQFDYTRRVEEVMLR 253

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            +N  L   +G   F++ V A+++    +  +  Y+PD    RS +  K+ +RS      
Sbjct: 254 RVNNILMPVVGSGRFKAEVSADIDFTAVEQTDEQYNPDLLALRSEQTLKE-RRSSAGGNN 312

Query: 304 SAVTVEQNMPHVSDRKVPLPR------------SLENTDKKEEQSNYEINTKSIATTHDN 351
                  N P  +                    S     K+E   N+E++     T    
Sbjct: 313 GVPGALTNQPPGAINAPEQAAVNGAPIGGGSGSSGTGQSKEETTRNFELDRSISYTKRQQ 372

Query: 352 YKLERL-SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
             + RL    VV +   L             D  L+ +  +V  A G +  RGD++++ +
Sbjct: 373 GTVRRLSVAVVVDDVASLNTETSEIERAPWSDEELSRLTLLVRDAVGYDPSRGDSVSVIN 432

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
             F   +   +  V   +          +  ALV L   +L+  +    L+ L   +   
Sbjct: 433 SPFALPEPPVAPEVIPFYKQTW--FLNLLQPALVGLFILILLLVVVRPILKTLSEQNKIA 490

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
             E    +I        A  T  + +D ++L S+   +   S     R            
Sbjct: 491 VAEDTEAAIF-------ADETDEISDDQVSLVSAEDVMVPGSPEKIDR--------QLNA 535

Query: 531 LLHMIEINEERFAKILRKWARS 552
           +  +I    ER A+++++W   
Sbjct: 536 IRGLIAEEPERVAQVVKQWVME 557


>gi|88858108|ref|ZP_01132750.1| flagellar M-ring protein [Pseudoalteromonas tunicata D2]
 gi|88819725|gb|EAR29538.1| flagellar M-ring protein [Pseudoalteromonas tunicata D2]
          Length = 574

 Score =  350 bits (897), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 100/552 (18%), Positives = 227/552 (41%), Gaps = 29/552 (5%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
            G  + R   LI+A  I V I +F+    +   P    L   +   ++ +    L    +
Sbjct: 40  GGVDVLRQVTLIIALTICVAIAVFII--IWARQPDMRPLGT-MPTDELIQTLDFLDAQKV 96

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
           D+++   G++I VP +     ++ +A +GL  +  NSG ++  +   FG++  ++     
Sbjct: 97  DYKLE--GNTIYVPETGYQNIKLMMAREGLDQA-PNSGTDILMQDMGFGVSQRLERERLK 153

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEA 190
            + E ++ARTI+ +  +V A+V + +P    F +    P+A+V++      +   +  ++
Sbjct: 154 HSREQQLARTIEELQNVVRAKVLLALPKENVFARQEKSPSATVVLTLKRGRILNGEEVDS 213

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHEIEMNINKA 248
           I  ++A+AV  L+   VTV D  G+LL +   +       K   + +  + E    I+  
Sbjct: 214 IVDIIASAVQGLEPARVTVTDQNGRLLNSGSQDSLAARSRKEYEVERKREQEYIEKIDSI 273

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308
           +   +G+ N+ + V   ++  + +  +  Y+PD    RS    ++               
Sbjct: 274 MIPVVGLGNYTAQVDLVMDFSSVEETQKRYNPDLPAVRSEMTREENNIG--GLAVGIPGA 331

Query: 309 EQNMPHVSD------RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
             N P V+        +     S  + ++KE   NYE++T           + R+S++V 
Sbjct: 332 LSNQPPVNSAIPEKAGQGSASNSAPSRNQKEATRNYELDTTISHKRQQTGVIRRISVSVA 391

Query: 363 VNKGRLTEVLG-RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           +N        G ++  + +    L+ I +++    G + +RGD + + ++ F++  + + 
Sbjct: 392 INYNSTAGADGAQATREPRSQQELSNIRRLLQGGIGFDMQRGDALEVVTVPFVQPYIEDV 451

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
             + +       +    V+ ALV +V  + V       L++L   DD  +      ++ S
Sbjct: 452 AELPMWEQPWFFKIARLVMGALVIIVLIIAVV---RPMLKKLIYPDDTLES-YDDDAMSS 507

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
              I  +    L    + +    + D      +L    +   +      +  ++    E 
Sbjct: 508 GVDIGDSTLDMLNQTFDESAVGFSADGTLQLPDLHGDEDLLKA------VRALVANEPEL 561

Query: 542 FAKILRKWARSE 553
            +++++ W   +
Sbjct: 562 SSQVVKAWLTED 573


>gi|157373218|ref|YP_001471818.1| flagellar MS-ring protein [Shewanella sediminis HAW-EB3]
 gi|157315592|gb|ABV34690.1| flagellar M-ring protein FliF [Shewanella sediminis HAW-EB3]
          Length = 570

 Score =  350 bits (897), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 124/571 (21%), Positives = 237/571 (41%), Gaps = 37/571 (6%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           I+  L   ++      R  +++  +++   +   +    +  S  Y  LY + E  + ++
Sbjct: 21  IVSSLKTKWQQFNRGDRQVLVL--AILASVVACVIVLLLWTASQGYRPLYGQQEKVETSQ 78

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L    I++R+  N   + V    +GKAR+ LAA+G+  +   SG E  D  +  G 
Sbjct: 79  IIEVLEAEGINYRLEANSGLVLVQEDKLGKARMLLAARGV-KAKVPSGMESLD-NSGIGT 136

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAIN 181
           + FM++     +LEGE++RTI ++  +  ARVH+ +P    F +     P+ASVM+    
Sbjct: 137 SQFMEQAKYRHSLEGELSRTIMALKAVRTARVHLAIPKRTLFIRQQPELPSASVMLDLYA 196

Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQ 235
            S  +    EAI +LVA +V  +    V ++D  G  L++    N+       + L   Q
Sbjct: 197 GSKIQPGQIEAIANLVAGSVTGMTPERVQIVDQEGNHLSSGIAINQDITQARDRQLKYTQ 256

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            ++  +    +  LA  LG +NF+  + A++N +  +      DP S V +  +   D  
Sbjct: 257 ELEQSLINRASSMLAPVLGKENFQVQIAAQVNFNQVEETRESLDPQSVVTQEKQSINDTN 316

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
                    A+T   N    +        +  N + ++E   YE+      T     +LE
Sbjct: 317 SDIAMGIPGALT---NQAPKAQANKTEENTRRNLN-QQESRQYEVGRSVRHTRFQQMQLE 372

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
            LS++V++N          + + G  ++ ++++  +V  + G + +RGD  +I S DF  
Sbjct: 373 NLSVSVLLNNQA-------AGENGWNEAQVSQLGTMVKDSIGYSMQRGDQFSINSFDFAP 425

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
            Q+     +     +    +    I     ++G  L+ F+    +  L    +    E  
Sbjct: 426 VQIAQFEPMPWWQTEGYQAYLRYFIGG---ILGFGLIFFVLRPLVSHLTRTAEHSLKEEL 482

Query: 476 GKSILSPPPISSAVTTGLMPNDNIAL---------DSSNQDIFSHSRNLQSRINSYVSKQ 526
            +   +    SS+  +G+   D  AL         D S+ D  S+ + L +  +    K 
Sbjct: 483 PQVEPALEAPSSSSISGVQSGDGQALADQLMGLEQDKSDTDWLSN-QGLPAPGSPLTVKM 541

Query: 527 SDLRLLHMIEINEERFAKILRKWARSEIEDR 557
             L L  +      R A+++  W      +R
Sbjct: 542 EHLSL--LANQEPARVAEVIAHWIGDNENER 570


>gi|323493122|ref|ZP_08098253.1| flagellar MS-ring protein [Vibrio brasiliensis LMG 20546]
 gi|323312593|gb|EGA65726.1| flagellar MS-ring protein [Vibrio brasiliensis LMG 20546]
          Length = 582

 Score =  350 bits (897), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 113/566 (19%), Positives = 234/566 (41%), Gaps = 37/566 (6%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           ++ Q + +       R L+L++V+   +   +    + ++  +  LY + E  D   I  
Sbjct: 33  KVKQLWSNS-----QRNLVLSAVLAAIVAAIIVVALWSSTQSFRPLYSQQERFDTGEIVS 87

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L    I++R+ +    + V    V + R+ LAA+G+  +   +G +   + +S G + F
Sbjct: 88  VLESEGINYRLQEKNGQVLVAEGEVARIRMLLAAKGV-KAKLPTGLDSLQEDSSLGTSQF 146

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAINPSV 184
           M+       LEGE+ RTI S++ +  ARVH+ +P    F +  +  P+ASVM+       
Sbjct: 147 METARYRHGLEGELVRTIISLNAVSNARVHLAIPRQTLFVRQNSEAPSASVMLELKPGEE 206

Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIVQAIQH 239
            K    EAI +L+  +V  +    V+V+D  G+LL+A+           K L   ++++ 
Sbjct: 207 LKPPQVEAIINLLVGSVTGMKPEQVSVIDQYGRLLSADVASAEAGKVNAKYLDYQKSVEK 266

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           +I       L   +G  NFR  V A++N    +  + + D ++ + R+     +    + 
Sbjct: 267 QIIQRAADMLTPIVGPSNFRVQVAADMNFSQVEETQEILD-NTPIVRNEHTITNNSIDQI 325

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           +          N P V+  +VP   S     + E    Y + +    T +   ++E+LS+
Sbjct: 326 AL--GVPGTLSNQPPVT-GEVPTQDSQNTNARSEINRQYAVGSSVRRTQYQQGQIEKLSV 382

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           +V++N+                +   ++I+ +++ A GI  +RGD+ +I S +F    + 
Sbjct: 383 SVLLNEAAAPNGT------AWTEDEKSQISTMITDAVGIADQRGDSFSIMSFNFTPLAIE 436

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
              ++       + +    VI  ++     + + F  L  L       D +  E+   + 
Sbjct: 437 APPSIPWWQDPTVQQPMRYVIGGML----GMAMIFFVLRPLIMHLTGADTRSQEL-EFAD 491

Query: 480 LSPPPISSAVTTGLMPNDNIALD--------SSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
               P+   + T         L+        +++  +   +  L    +    +   L+L
Sbjct: 492 PQDEPVYDNLQTREEREREEDLNRKLSEKGIAASSGLNVGNDMLPPPGSPLEIQLKHLQL 551

Query: 532 LHMIEINEERFAKILRKWARSEIEDR 557
             +     ER A++L++W       R
Sbjct: 552 --IANEEPERVAEVLKQWVNVNEHSR 575


>gi|126463732|ref|YP_001044846.1| flagellar MS-ring protein [Rhodobacter sphaeroides ATCC 17029]
 gi|126105396|gb|ABN78074.1| flagellar M-ring protein FliF [Rhodobacter sphaeroides ATCC 17029]
          Length = 542

 Score =  350 bits (897), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 132/550 (24%), Positives = 233/550 (42%), Gaps = 25/550 (4%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +         L   R  ++ S  +   +  +    F   P    LY  L+      +  A
Sbjct: 15  VQNLISIWNDLDGRRRAVVVSATVAMFLAVLGLSQFAGRPPMALLYAGLQGPAAGEVVTA 74

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L      + +   G S+ V ++   + R+ LA +GLP++ + +GYEL D ++ FG TS M
Sbjct: 75  LEAQGAAYEVR--GDSVYVEAARRDEIRMKLAGEGLPATGA-AGYELLDGLSGFGTTSQM 131

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS-VY 185
            +   +RA EGE+ARTI +   + AARVHI  P    FR+   RPTASV +     +   
Sbjct: 132 FDAAYLRAKEGELARTILASPKVKAARVHIAQPAAQPFRRE-QRPTASVTVTTSGGAVTA 190

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNI 245
             A A +HLVA+AV  L   DV+V+DS   L+ + + + +      S       E+  N+
Sbjct: 191 DQARAFKHLVASAVAGLQPEDVSVIDSVMGLIRSGDEKDSATAAGESRA----AELRSNV 246

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305
            + L A +G       V  ++    + I E  +DP  +V  S    + +  S +++P   
Sbjct: 247 ERLLEARVGPGRAVVEVSVDVETARESIVEKSFDPKGRVPISSETQEKS--SNSTEPSPD 304

Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365
           VTV  N+P    +     +S  +T +  E  N+E++            + RL++AV+V+ 
Sbjct: 305 VTVASNLPEGDAKGGTGGKS--STSETRETVNFEVSQTQRELMRQPGAIRRLTVAVLVDG 362

Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425
            +     G    + + +  LA + ++VS+A G++  RGD +T+ S+ F E         +
Sbjct: 363 IKTVADDGTVGWEPRPEEELAVLRELVSSAVGLDESRGDRLTLRSLAF-ETPPEAGTLAE 421

Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485
             F+  L      +++ +   V  L+   LGL  +R +              ++      
Sbjct: 422 TGFLSRLGAF--DLMSLIQIGVLALVALILGLFVVRPVLTAPPRPPAAPQPLALPGYEGG 479

Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545
             A+T  +           + D+        + ++         RL  +IE  +    +I
Sbjct: 480 EPALTGEI---------DDSGDLPDFPMVSSAPLDLDEEADPVARLRRLIEERQAESVEI 530

Query: 546 LRKWARSEIE 555
           LR W   + E
Sbjct: 531 LRGWMEPQRE 540


>gi|167644977|ref|YP_001682640.1| flagellar MS-ring protein [Caulobacter sp. K31]
 gi|167347407|gb|ABZ70142.1| flagellar M-ring protein FliF [Caulobacter sp. K31]
          Length = 547

 Score =  350 bits (897), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 131/547 (23%), Positives = 227/547 (41%), Gaps = 7/547 (1%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
           +F  +    G  R+  L  V    I +  A    ++    + L   ++  +    + AL 
Sbjct: 3   KFLSAIQRFGVGRLAALIGVAAGAIAVIAAVMMMMSKQPNELLLSNVDPKESAAATQALD 62

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
            A I +    +GS+I V    V  AR  +  +GL +S S  GYE+FD  ++ G T F+Q+
Sbjct: 63  TAGIKYETKSDGSTIYVARDKVNAARQLIFTKGLVTSGS-VGYEIFDTGSALGQTDFVQQ 121

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA 188
           + R RAL+GE+ RTIQ   G+ AARVH+VMP    F +   +PTA+V +           
Sbjct: 122 LNRQRALQGELERTIQGWDGVRAARVHLVMPKRQLFEEDAEQPTAAVTVSMAREPSPDMV 181

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKA 248
            A+++LVA +V  +    V V+D  GK L+A   E      +     A +  I   +   
Sbjct: 182 RAVQNLVAGSVAGMKPDRVNVIDQHGKTLSAGNDESLAGKMAQDAKSATEARIAKTVKDM 241

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308
           +   LG    R  V A+L+++    +E  +DPD +V RS   +        +     VT 
Sbjct: 242 IDGVLGPGKARVNVTADLDLNRVTTQERKFDPDGQVIRSESTNAANNSETKNDDTGGVTS 301

Query: 309 EQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368
            QN+P  +        S   +D  E  +NYEI+  +  T  +   + ++++AV ++    
Sbjct: 302 TQNIPGQTPNGFQPLGS--KSDSNESVTNYEISESTKTTVQEPGAVRKVAVAVAIDGVAA 359

Query: 369 TEVLG--RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
                    A   +    +A+I ++V  A G +  RGD +++ ++ F + +    G   +
Sbjct: 360 PPGKDGKPGAYTPRSAEEIAQIEQLVKTAVGFDQTRGDQVSVVNVRFPQPEDQGLGKAGL 419

Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNIDDAKKGEVGGKSILSPPPI 485
                        I   V  V  LL+    +   L+ L          + G  +     +
Sbjct: 420 -LAGFDKNDIMRFIELGVLAVVALLILLFAVRPFLKSLMTPPTPLGLALNGPQVTRMVTL 478

Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545
           S   T  ++ + + A  +         R   ++I   V   S  R+   +E + +    I
Sbjct: 479 SDGSTQEVIVDQSGASMALAAPSDMDQRIDIAKIEGQVKASSVKRVAEFVEKHPDESVAI 538

Query: 546 LRKWARS 552
           LR W   
Sbjct: 539 LRTWLHE 545


>gi|120598250|ref|YP_962824.1| flagellar MS-ring protein [Shewanella sp. W3-18-1]
 gi|146293672|ref|YP_001184096.1| flagellar MS-ring protein [Shewanella putrefaciens CN-32]
 gi|120558343|gb|ABM24270.1| flagellar M-ring protein FliF [Shewanella sp. W3-18-1]
 gi|145565362|gb|ABP76297.1| flagellar M-ring protein FliF [Shewanella putrefaciens CN-32]
          Length = 560

 Score =  349 bits (896), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 106/553 (19%), Positives = 220/553 (39%), Gaps = 32/553 (5%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
           S   +   R + +   + + + L +    +   P Y  L  K+E  ++ ++   L +  I
Sbjct: 25  SLGGVDMMRQITMILALAICLALAVFVMLWAQEPEYRPL-GKMETQEMVQVLDVLDKNKI 83

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
            ++I  +   I VP     + ++ L+  G+      +  +   + + FG++  M++    
Sbjct: 84  KYQIEVD--VIKVPEDKYQEVKLMLSRAGI--DGGTTSKDFLTQDSGFGVSQRMEQARLK 139

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV-YKSAEAI 191
            + E  +AR I+ +  +  A+V + +P    F +  ++P+A+V+I      +     +AI
Sbjct: 140 HSQEENLARAIEQLQSVSRAKVILALPKENVFARNTSQPSATVVINTRRGGLGQGEVDAI 199

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNINKAL 249
             +VA+AV  L+   VTV DS G+LL +   +       + L +VQ  + E    I   L
Sbjct: 200 VDIVASAVQGLEPSRVTVTDSNGRLLNSGSQDGVSARARRELELVQQKEAEYRTKIESIL 259

Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309
              LG DNF S V   ++    +     ++PD    RS    ++   S            
Sbjct: 260 VPILGPDNFTSQVDVSMDFTAVEQTAKRFNPDLPALRSEMTVENN--STGGTTGGIPGAL 317

Query: 310 QNMPHVS-----DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
            N P +      D      + +     +E   N+E++T    T      + R+S++V V+
Sbjct: 318 SNQPPMESDIPEDATNASEKVVAGNSHREATRNFELDTTISHTRQQIGVVRRISVSVAVD 377

Query: 365 -KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
            K    +  G+ A   + +  L  I +++  A G +++RGD + + ++ F++  + +  +
Sbjct: 378 FKPGAADENGQVARVARTEQELTNIRRLLEGAVGFSTQRGDVLEVVTVPFMDQLMEDIPS 437

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG--GKSILS 481
            ++       R     + ALV LV  L V       L+RL   D     +    G  +  
Sbjct: 438 PELWEQPWFWRAVKLGVGALVILVLILAV---VRPMLKRLIYPDSVNMPDDSRLGNELAE 494

Query: 482 PPPISSAVTTGLM--PNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
                +A T G++       +       +  +       I +         +  ++    
Sbjct: 495 IEDQYAADTLGMLNTKEAEYSYADDGSILIPNLHKDDDMIKA---------IRALVANEP 545

Query: 540 ERFAKILRKWARS 552
           E   ++++ W + 
Sbjct: 546 ELSTQVVKNWLQD 558


>gi|145298346|ref|YP_001141187.1| flagellar MS-ring protein [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142851118|gb|ABO89439.1| flagellar M-ring protein FliF [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 569

 Score =  349 bits (896), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 105/552 (19%), Positives = 216/552 (39%), Gaps = 26/552 (4%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           F S T + R   LIL   I + I +F+    +   P    L       ++ +    L   
Sbjct: 31  FLSNTDVLRQITLILGLAICLAIAVFIL--LWGKEPDMRPLGT-YSTQELVKTLDYLDAQ 87

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS--SNSGYELFDKVNSFGLTSFMQE 128
            I + +  +G S+ V +      R+ L   GL +++  SN G  +  K +SFG++  M+ 
Sbjct: 88  KIPYEV--DGKSVLVSAEKYADIRLRLTRAGLATNTDASNDGESILLKDSSFGVSQRMET 145

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV-YKS 187
                + E ++A  I+    +  A+V + +P    F +   +P+A+V++     ++    
Sbjct: 146 ERLKLSRERQLASAIEQFQNVAKAQVLLAIPKDNVFARNERKPSATVVLSLKGNALGQGE 205

Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNI 245
            ++I  +VA+AV  L+   VTV D  G+LL +   +       K  ++ Q  + E +  I
Sbjct: 206 VDSIVDMVASAVHGLEPTRVTVTDQNGRLLNSGSQDPVSAQTRKEFAMQQKQEVEYKQKI 265

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP--- 302
           +  L   LG DN+ + V   L+   Q+     Y+PD    RS    ++   S ++     
Sbjct: 266 DAILIPVLGADNYTAEVDLSLDFSQQEQTRKTYNPDLPAVRSEMTLEENSASGSNGGVPG 325

Query: 303 --ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
              +      N+P  +        S     +KE   N+E++T           + R++++
Sbjct: 326 ALTNQPPAASNIPEEAAGGDGGAASSSGRSRKEATRNFELDTTVSHIRRQMGGIRRMTVS 385

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           V V+   +    G    + +  + L  + +++S   G +  RGDT+ + ++ F   +L N
Sbjct: 386 VAVDYKSIAGADGAVTREARSQAELDTLRRLLSGGLGFDVTRGDTLEVVAIPFNRPELEN 445

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
                +       R    V  A   LV  +L+  +    L+RL   D   +G++   + +
Sbjct: 446 VADAPIYEQPWFWR---AVRIAASVLVIIVLIVTVVRPMLKRLLYPDARPEGDLDLDNSI 502

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
                                   +  +     +    +           +  ++    +
Sbjct: 503 VLGGDDELSLLAAQAESEPVFGVRDGHLKLPDLHRDEDL--------LKAVRALVANEPD 554

Query: 541 RFAKILRKWARS 552
             A+++++W  +
Sbjct: 555 LAAQVIKEWVSN 566


>gi|322379554|ref|ZP_08053893.1| flagellar MS-ring protein [Helicobacter suis HS1]
 gi|322379773|ref|ZP_08054077.1| flagellar MS-ring protein [Helicobacter suis HS5]
 gi|321147801|gb|EFX42397.1| flagellar MS-ring protein [Helicobacter suis HS5]
 gi|321148014|gb|EFX42575.1| flagellar MS-ring protein [Helicobacter suis HS1]
          Length = 567

 Score =  349 bits (896), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 123/574 (21%), Positives = 238/574 (41%), Gaps = 38/574 (6%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-----YDNLYVKLE 56
           ++L Q++ FF   + L R + + + + + + +   +    +          Y  L+  ++
Sbjct: 5   SLLQQVISFF---SKLNRAQKITIVTAVTLIVAFLVFLLIYPTHDKGDLSGYGVLFEGMD 61

Query: 57  VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
            SD   I   L + +I ++I     +I +P   + + RI LA+QG+P +S   GYE+FD 
Sbjct: 62  NSDNALILQHLQQKHIPYKIPKE-DTILIPRDRIYEERISLASQGIPKTSK-VGYEIFD- 118

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
           +  FG T F Q I  +RA+EGE++RTI+S++ I  A VHI +P    F      PTASVM
Sbjct: 119 IKDFGATDFDQNIKYIRAIEGELSRTIESLNPIEKANVHIAIPKDSVFVSHEIPPTASVM 178

Query: 177 IRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKSL 231
           ++         +    I++L+AA+VP L + +V +++  G+ L  N+     R +    L
Sbjct: 179 LKIKPNMRLLPRQIIGIKNLIAASVPKLTVENVKLVNENGEPLGENDQLDTTRELAQAQL 238

Query: 232 SIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290
              Q  ++ +E  I   LA  + G D   + V AE +   ++  +  +DP++ V RS + 
Sbjct: 239 RYKQNFENMLESKIANILAPIVGGRDKVVARVNAEFDFSQKKSTKETFDPNN-VVRSEQT 297

Query: 291 SKDAQRS-ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
            ++ +      Q      V  N+  V  + +   +  E  +K    +NYE+         
Sbjct: 298 MEEKKEGLPKKQVGGVPGVVSNIGPV--QGIANDQLKEKYEKSTNTTNYEVGKMVSEIKG 355

Query: 350 DNYKLERLSIAVVVNKGRL---TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
           +   L RL+ AVVV+                     + + +IN +V  A G N  RGD +
Sbjct: 356 EFGVLTRLNAAVVVDGKYQKVNKNGTESMEYVALSAAEMDQINALVKQAIGYNQNRGDAV 415

Query: 407 TITSMDF-LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL----R 461
           T+++ +F  ++  +   +     +    +      +   +++  L++       +    +
Sbjct: 416 TVSNFEFNAKSTKYVPMSAYERVVATTEKVLGPFSSLFKYIIVGLVLYVFYKKIITPFSQ 475

Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521
           R+  I   ++ +V                 G M          +             +  
Sbjct: 476 RMLEIQPDEEEQVQSLFATEEEDDEEVDKFGEMRKKVEDQLGLSASFDEEDVKYDIMLE- 534

Query: 522 YVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
                   R+ H ++   E  A + +   + E+ 
Sbjct: 535 --------RVRHSLKEKPEEIASMFKLLIKDEVA 560


>gi|312884912|ref|ZP_07744602.1| flagellar MS-ring protein [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367389|gb|EFP94951.1| flagellar MS-ring protein [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 583

 Score =  349 bits (896), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 117/559 (20%), Positives = 232/559 (41%), Gaps = 35/559 (6%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F      L R  +L+L+  I V +++ +   F+V  P    L V  +  ++  I   L
Sbjct: 45  LDFGAGDLDLLRQVVLVLSISICVALIVMLF--FWVREPEMRPLGV-YDTEELIPILDYL 101

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
            +  +D+ +   G++I VP S     ++ +   GL +    +G ++  +   FG++  ++
Sbjct: 102 DQQKLDYELE--GNTILVPVSDFNSLKLDMVRAGL-NQEREAGDDILMQDMGFGVSQRLE 158

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187
           +     + E ++++ I+ +  +  ARV + +P    F +     +ASV +     +  K 
Sbjct: 159 QERLKLSRERQLSKAIEELKQVRKARVLLALPKQSVFVRHNQEASASVFLTLKTGANLKQ 218

Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEM 243
              +++  +VA+AVP +    VTV D  G+LL++   +   +   K   + +  +  +  
Sbjct: 219 EEVDSVVDMVASAVPGMKPNRVTVTDQHGRLLSSGSEDPASSARRKEHELERKQEQALRE 278

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE----- 298
            I+  L   LG  N+ + V  EL+    +    V+DPD    RS    +D          
Sbjct: 279 KIDSVLIPILGFGNYTAQVDIELDFSAVEQTRKVFDPDKPATRSEYTLEDYNNGNMVAGI 338

Query: 299 ----TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
               ++QP +  ++ Q++  + D       S+     KE   N+EI+T           +
Sbjct: 339 PGALSNQPPADASIPQDVAQMKDGTALGQGSV----HKEATRNFEIDTTISHERRQTGVV 394

Query: 355 ERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
            R ++AV V N+  +    G +  Q   ++ L  I +I+    G +  RGD + + SM F
Sbjct: 395 NRQTVAVAVKNRSVVNPDTGETTYQPISEAELNSIKQILIGTVGFSESRGDLLNVLSMQF 454

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
            E +      V +      +       +ALV +V  L++      A+++L N   A   +
Sbjct: 455 AEPESDVVTDVPIWEHPNFNDWVRWFASALVIIVVILVLV---RPAMKKLINP--ASDED 509

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
                     PI +   T L+  +   LD      F  S +L    N +  +     +  
Sbjct: 510 DDQMYGPDGMPIGADGETSLIGGE---LDGGELFEFGSSIDLP---NLHKDEDVLKAIRA 563

Query: 534 MIEINEERFAKILRKWARS 552
           ++    E  A++++ W + 
Sbjct: 564 LVSNEPELAAQVVKNWMQD 582


>gi|221640811|ref|YP_002527073.1| flagellar MS-ring protein [Rhodobacter sphaeroides KD131]
 gi|221161592|gb|ACM02572.1| Flagellar M-ring protein FliF [Rhodobacter sphaeroides KD131]
          Length = 542

 Score =  349 bits (895), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 131/553 (23%), Positives = 238/553 (43%), Gaps = 28/553 (5%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +  L+  +      GR R +++ + + + + +   ++     P    LY  L+      +
Sbjct: 15  VQNLISIWNDLD--GRRRAVVVGATVAMFLAVLGLSQL-AGRPPMALLYAGLQGPAAGEV 71

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
             AL      + +   G S+ V ++   + R+ LA +GLP++ + +GYEL D ++ FG T
Sbjct: 72  VTALEAQGAAYEVR--GDSVYVEAARRDEIRMKLAGEGLPATGA-AGYELLDGLSGFGTT 128

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
           S M +   +RA EGE+ARTI +   + AARVHI  P    FR+   RPTASV +     +
Sbjct: 129 SQMFDAAYLRAKEGELARTILASPQVKAARVHIAQPAAQPFRRE-QRPTASVTVTTSGGA 187

Query: 184 -VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242
                A A +HLVA+AV  L   DV+V+DS   L+ + + + +      S       E+ 
Sbjct: 188 VTADQARAFKHLVASAVAGLQPEDVSVIDSVMGLIRSGDEKDSATAAGESRA----AELR 243

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
            N+ + L A +G       V  ++    + I E  +DP  +V  S    + +  S +++P
Sbjct: 244 SNVERLLEARVGPGRAVVEVSVDVETARESIVEKSFDPKGRVPISSETQEKS--SNSTEP 301

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
              VTV  N+P    +     +S   T +  E  N+E++            + RL++AV+
Sbjct: 302 SPDVTVASNLPEGDAKGGTGGKST--TSETRETVNFEVSQTQRELMRQPGAIRRLTVAVL 359

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           V+  +     G    + + +  LA + ++V +A G++  RGD +T+ S+ F E       
Sbjct: 360 VDGIKTVADDGTVGWEPRPEEELAVLRELVGSAVGLDESRGDRLTLRSLAF-ETPPEAGT 418

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482
             +  F+  L      +++ +   V  L+   LGL  +R +              ++   
Sbjct: 419 LAETGFLSRLGAF--DLMSLIQIGVLALVALILGLFVVRPVLTAPPRPPAAPQPLALPGY 476

Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542
                A+T  +           + D+        + ++         RL  +IE  +   
Sbjct: 477 EGGEPALTGEI---------DDSGDLPDFPMVSSAPLDLDEEADPVARLRRLIEERQAES 527

Query: 543 AKILRKWARSEIE 555
            +ILR W   + E
Sbjct: 528 VEILRGWMEPQRE 540


>gi|296534177|ref|ZP_06896667.1| flagellar M-ring protein FliF [Roseomonas cervicalis ATCC 49957]
 gi|296265497|gb|EFH11632.1| flagellar M-ring protein FliF [Roseomonas cervicalis ATCC 49957]
          Length = 525

 Score =  348 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 121/419 (28%), Positives = 196/419 (46%), Gaps = 10/419 (2%)

Query: 12  KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71
           +S  +LG  R+  LA   L+ + L         +     LY  L+  D  +I  AL  A 
Sbjct: 38  ESLRALGTARLAALAFTGLLTLGLIGFLTLRTATTPMGLLYGDLDQRDAAQIVAALERAR 97

Query: 72  IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131
           + +R+  NG+ +  P   + + R+ LA  GLP+  S  GYE+FD+ +    T F Q+I R
Sbjct: 98  VPYRLGRNGTEVLAPEEDIPRLRLSLARDGLPAGGS-VGYEIFDRQSGLTTTPFQQDINR 156

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYKSAE 189
           +RALEGEIAR+I+ + G+ +ARVH+V+P    F +      ASV+++         +  +
Sbjct: 157 LRALEGEIARSIRGLDGVASARVHLVLPRREPFSRERGESQASVVLQMRGIHRLDREGVQ 216

Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIEMNINK 247
           A+ HLVAAAVP L   ++ V+D  G+LL+         +      I +  +  +   + +
Sbjct: 217 AVLHLVAAAVPGLKPQNIAVVDGRGELLSRGGQAGANGLAQSQEEIRRGQEMRMARAVEE 276

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVT 307
            L   LG    R+    E++ D  Q  E  +DP+++V RS     ++ R+   Q  S   
Sbjct: 277 MLERILGPGRVRAEATIEMDHDRVQTTEERFDPENQVPRSQSSVNESSRNGEQQNVSVAN 336

Query: 308 VEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367
                P       P  +      ++EE  NYEI   +  T  D   + RLS+AV+V+   
Sbjct: 337 QLPGAPPAQQNSGPQSQEA----RQEETVNYEIGRTTRNTLRDQPVVRRLSVAVLVDGVW 392

Query: 368 LTEVLGRSAD-QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425
                G +A  + +    +  I+ +V  A G N  RGD + + S+ F E    + G  Q
Sbjct: 393 EPGEAGGAARFRERTPQEMERISALVRGAIGFNETRGDRLEVVSLRFAEPVWGSDGESQ 451


>gi|301168113|emb|CBW27699.1| flagellar basal-body M-ring protein [Bacteriovorax marinus SJ]
          Length = 554

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 121/563 (21%), Positives = 248/563 (44%), Gaps = 30/563 (5%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +  F +   SL   + + L S+    +  F+    + +    D LY +L   D  +I+V 
Sbjct: 9   IRNFTEFFNSLDLNKKIGLVSIAAFIVACFVGIVIWASKTRMDVLYTELNREDSKKIAVL 68

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L E  I + +S++G +IS+P  ++ K R+ +A  G+ + S   GYE+FDK  SFG TSF+
Sbjct: 69  LEEKKIPYEMSNDGKTISIPEELINKWRLEIATLGV-NFSGTVGYEVFDK-QSFGTTSFV 126

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SV 184
           Q++ + RALEGE+ +TI+ I G+  ARVH+ +P+   F      P+ASV++         
Sbjct: 127 QKVNKQRALEGELVKTIKYIRGVKRARVHLSIPESSPFVSEKKAPSASVVVDLERGVTLT 186

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIE 242
               + +  LV++++  +   +V +LD  GK L+ N  +         +++   +  + E
Sbjct: 187 PDEIKGVASLVSSSIDGMRNENVVILDDRGKKLSENIGDPMTAYTANRMALEGKVNRKYE 246

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
             I   L+  +G     + V   L+       +  +D ++K   S   +          P
Sbjct: 247 KQIEDILSKVVGAGKVIAKVTVNLDFTESVSTKTEFDGENKAVLSEVSNTQKLNGSRPSP 306

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
           +       N+P     +  +P +  N DK     NY + +K   + +    + ++S AV+
Sbjct: 307 QGIPGARSNLPGEQP-QPGIPETRNNVDKSLATRNYNVPSKVTKSKNPTAGIRKISAAVM 365

Query: 363 VNKGRL----TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           ++  R+     +    +  +   ++ LA  + IVS+  GI++RRGD I I +M+F +  +
Sbjct: 366 IDGRRVQVKGADGAISTQYERWSEADLANFSAIVSSTLGIDARRGDQIVIKNMEFAQEDM 425

Query: 419 FNSGTVQVSFMDILSRH-FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
               +++    +  +R     ++  L   +   L  FL +    +    +  +  E    
Sbjct: 426 ---ASIEAMMREKENRELIKNIVKYLTVGLAITLFFFLVVRPFIQWVTDNTVETVE---- 478

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR--LLHMI 535
                 P +      +  N  +        +      ++ ++N    + + LR  ++ ++
Sbjct: 479 ---DFLPKTLEELEKVQANQKLP------GLEDALPQIEEKLNPEKIEGNMLREKIISLV 529

Query: 536 EINEERFAKILRKWARSEIEDRY 558
           E N  + A+++ +   ++  D+ 
Sbjct: 530 EGNPAKAAQVIHEIIHAQESDKQ 552


>gi|260767706|ref|ZP_05876641.1| flagellar M-ring protein FliF [Vibrio furnissii CIP 102972]
 gi|260617215|gb|EEX42399.1| flagellar M-ring protein FliF [Vibrio furnissii CIP 102972]
 gi|315179462|gb|ADT86376.1| flagellar M-ring protein FliF [Vibrio furnissii NCTC 11218]
          Length = 580

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 117/559 (20%), Positives = 237/559 (42%), Gaps = 36/559 (6%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F      L R  +L+L+  I V +++ +   F+V  P    L    E  ++  +   L
Sbjct: 43  LDFAMGDLDLLRQIVLVLSISICVALIVMLF--FWVKEPEMRPLGA-YETEELIPVLDYL 99

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
            +    +++  +G++I VP+S     ++++   GL + S  +G ++  +   FG++  ++
Sbjct: 100 DQQKQTYKL--DGNTILVPNSDYNSIKLNMVRAGL-NQSRQAGDDILLQDMGFGVSQRLE 156

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187
           +     + E ++ + I+ +  +  ARV + +P    F +     +ASV +     S  K 
Sbjct: 157 QERLKLSRERQLGKAIEEMRQVNKARVLLALPKQSVFVRHNQEASASVFLTLRTGSNLKQ 216

Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEM 243
              ++I  +VA+AVP +    VTV D  G+LL++   +       K   + +  +  +  
Sbjct: 217 EEVDSIVDMVASAVPGMTPTRVTVTDQHGRLLSSGSQDPVSAARRKEQELERKQEQNLRD 276

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE----- 298
            I+  L   LG+ N+ + V  EL+    +     +DP++   RS    +D          
Sbjct: 277 KIDSVLIPILGLGNYTAQVDIELDFSAIEQTRKRFDPNTPATRSEYTLEDYNNGNVVAGV 336

Query: 299 ----TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
               ++QP +  ++ Q++  + D  V    S+     KE   N+E++T           +
Sbjct: 337 PGALSNQPPADASIPQDVAQMKDGSVMGQGSV----HKEATRNFELDTTISHERKQTGVI 392

Query: 355 ERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
            R ++AV V N+  +    G        +S L  I +++    G N  RGD + + SM F
Sbjct: 393 NRQTVAVAVKNRSSVNADTGEVTYTPLSESELNSIRQVLIGTVGYNENRGDLLNVLSMQF 452

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
            E ++     V +      S     + +ALV +V  L++      AL++L N       +
Sbjct: 453 AEPEMDQLADVPIWDNPNFSDWIRWLASALVIIVVVLVLV---RPALKKLLNPAAEDDEQ 509

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
           + G   L   PI +   T L+ +D   ++      F    +L    N +  +     +  
Sbjct: 510 LYGPDGL---PIGADGETSLIGSD---IEGGELFEFGSGIDLP---NLHKDEDVLKAVRA 560

Query: 534 MIEINEERFAKILRKWARS 552
           ++    E  A++++ W ++
Sbjct: 561 LVANEPELAAQVVKNWMQN 579


>gi|319427071|gb|ADV55145.1| flagellar M-ring protein FliF [Shewanella putrefaciens 200]
          Length = 560

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 106/553 (19%), Positives = 219/553 (39%), Gaps = 32/553 (5%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
           S   +   R + +   + + + L +    +   P Y  L  K+E  ++ ++   L +  I
Sbjct: 25  SLGGVDMMRQITMILALAICLALAVFVMLWAQEPEYRPL-GKMETQEMVQVLDVLDKNRI 83

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
            ++I  +   I VP     + ++ L+  G+      +  +   + + FG++  M++    
Sbjct: 84  KYQIEVD--VIKVPEDKYQEVKLMLSRAGI--DGGTTSKDFLTQDSGFGVSQRMEQARLK 139

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV-YKSAEAI 191
            + E  +AR I+ +  +  A+V + +P    F +  ++P+A+V+I      +     +AI
Sbjct: 140 HSQEENLARAIEQLQSVSRAKVILALPKENVFARNTSQPSATVVINTRRGGLGQGEVDAI 199

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNINKAL 249
             +VA+AV  L+   VTV DS G+LL +   +       + L +VQ  + E    I   L
Sbjct: 200 VDIVASAVQGLEPSRVTVTDSNGRLLNSGSQDGVSARARRELELVQQKEAEYRTKIESIL 259

Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309
              LG DNF S V   ++    +     ++PD    RS    ++   S            
Sbjct: 260 VPILGPDNFTSQVDVSMDFTAVEQTAKRFNPDLPALRSEMTVENN--STGGTTGGIPGAL 317

Query: 310 QNMPHVS-----DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
            N P +      D      + +     +E   N+E++T    T      + R+S++V V+
Sbjct: 318 SNQPPMESDIPEDATNASEKVVAGNSHREATRNFELDTTISHTRQQIGVVRRISVSVAVD 377

Query: 365 -KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
            K    +  G+ A   + +  L  I +++  A G +++RGD + + ++ F++  + +   
Sbjct: 378 FKPGAADENGQVARVARTEQELTNIRRLLEGAVGFSTQRGDVLEVVTVPFMDQLMEDIPA 437

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG--GKSILS 481
            ++       R     + ALV LV  L V       L+RL   D     +    G  +  
Sbjct: 438 PELWEQPWFWRAVKLGVGALVILVLILAV---VRPMLKRLIYPDSVNMPDDSRLGNELAE 494

Query: 482 PPPISSAVTTGLM--PNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
                +A T G++       +       +  +       I +         +  ++    
Sbjct: 495 IEDQYAADTLGMLNTKEAEYSYADDGSILIPNLHKDDDMIKA---------IRALVANEP 545

Query: 540 ERFAKILRKWARS 552
           E   ++++ W + 
Sbjct: 546 ELSTQVVKNWLQD 558


>gi|332533127|ref|ZP_08408996.1| flagellar M-ring protein FliF [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332037409|gb|EGI73863.1| flagellar M-ring protein FliF [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 571

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 96/558 (17%), Positives = 224/558 (40%), Gaps = 23/558 (4%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +Q   +  +   +   R + L   + + + + +    +   P    L  K++  ++ +  
Sbjct: 27  EQKSGYLSALNGVDVLRQVTLVIALAICLAIAIFIIIWARQPDMRPL-GKMQTEELIQTL 85

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L    I++++  +G+ +SV  S     ++ +  +GL      SG ++  +   FG++ 
Sbjct: 86  DFLDAQKIEYQL--DGNVVSVDESEYQNIKLLMTREGL-EQGPASGSDIIMQDMGFGVSQ 142

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
            ++        E ++ARTI+ ++ I  A+V + +P    F +   +P+A+V++       
Sbjct: 143 RLERERLKHGREQQLARTIEELNNITRAKVLLAIPKENVFARREKKPSATVVLTLKRGRS 202

Query: 185 Y--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHE 240
              +  +++  ++A+AV  L+   VTV D  G+LL +           K   + +  + E
Sbjct: 203 LDREEVDSVVDMIASAVQGLEPARVTVTDQNGRLLNSGSQSSLAARSRKEYDLERKREQE 262

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I+  L   +G+ N+ + V   ++  + +  +  Y+PD    RS    ++      +
Sbjct: 263 YLEKIDSILIPVVGLANYTAQVDLSMDFSSVEETQKRYNPDLPAVRSETTFEENNIGGLA 322

Query: 301 QP-----ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
                   +   +  N+P  + +      +      KE   NYE++T        +  + 
Sbjct: 323 VGIPGALTNQPPLNSNIPEDAGQGGAGTATSPTRSHKEATRNYELDTTISHKRQQSGVIR 382

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           R+S++V V+        G +    +    L+ I +++    G + +RGD + + ++ F+ 
Sbjct: 383 RISVSVAVDYVPKVGENGETTMAPRSVEALSNIRRLLQGGVGFDMQRGDALEVVTVPFVR 442

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
                +  V +   D   +    V+ ALV +V   L+  +    L+RL   DD  + E  
Sbjct: 443 EATNLAIEVPLWEQDWFMKIARLVLGALVIIV---LIMAVVKPMLKRLIYPDDTLE-EYD 498

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
             ++ S   I       L  + + A    + D      +L    +   +      +  ++
Sbjct: 499 EDALSSGVDIGDNTLDMLNKDFDSASVGFSSDGTLQLPDLHGDEDLLKA------IRALV 552

Query: 536 EINEERFAKILRKWARSE 553
               E  +++++ W   +
Sbjct: 553 ANEPELSSQVVKAWLTED 570


>gi|170725973|ref|YP_001759999.1| flagellar MS-ring protein [Shewanella woodyi ATCC 51908]
 gi|169811320|gb|ACA85904.1| flagellar M-ring protein FliF [Shewanella woodyi ATCC 51908]
          Length = 568

 Score =  347 bits (890), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 106/559 (18%), Positives = 231/559 (41%), Gaps = 37/559 (6%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
            G  + R   ++LA  I + + +F+    +   P +  L  K+   D+ ++   L +  +
Sbjct: 31  GGVDMLRQVTMVLALAICLAVAVFV--MLWAQEPEFRPL-GKMATEDMIQVLDVLDKNKV 87

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
            ++I   G  + VP     + ++ L+ +G+ S+S+++ Y    + + FG++  M++    
Sbjct: 88  AYKIE--GDVVKVPEEKYQEVKLMLSREGVDSASNSTDY--LSQDSGFGVSQRMEQARLK 143

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN-PSVYKSAEAI 191
            + E  +AR I+ +  +  A+V + +P    F +  ++P+A+V+I A       +  ++I
Sbjct: 144 HSQELNLARAIEELRSVTRAKVILAIPKENVFARNRSKPSATVVISARRAGLGQEEVDSI 203

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNINKAL 249
             +VA+AV  L+   VTV DS G+LL +   +       + L +VQ  + E    +   L
Sbjct: 204 VDIVASAVQGLEPTRVTVTDSNGRLLNSGSQDGVSARARRELELVQQKESEYRNKVESIL 263

Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309
              LG +NF S V   ++    +     ++PD    RS    +++  S +          
Sbjct: 264 MPILGPENFTSQVDVSMDFTAVEQTAKRFNPDLPALRSEMTVENS--SNSGAIGGIPGAL 321

Query: 310 QNMPH--------VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
            N P           D +         +  KE   N+E++T    T      + R+S++V
Sbjct: 322 SNQPPMEANIPQNALDGEQSEANKNPGSSHKEATRNFELDTTISHTRQQIGVVRRVSVSV 381

Query: 362 VVNKGRLTE-VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
            V+         G+     + D  +A I +++  A G +++RGD I + ++ F++  +  
Sbjct: 382 AVDFKPGPAGEDGQVNRVPRTDQEMANIRRLLEGAVGFSTQRGDVIEVVTVPFMDQLIDE 441

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG--GKS 478
           +   ++       R     +  LV L    L+ F+    L++L   D +   +    G  
Sbjct: 442 APAPELWEQPWFWRAIKLAMGGLVILA---LILFIVRPMLKKLIYPDSSNLPDEPKFGDE 498

Query: 479 ILSPPPISSAVTTGLM--PNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536
           +       ++ T G++  P+   + +     +          I +         +  ++ 
Sbjct: 499 LAEIEDQYASDTLGMLNRPDAEYSYNDDGSILIPDLHKDDDMIKA---------IRALVA 549

Query: 537 INEERFAKILRKWARSEIE 555
              E   ++++ W +   +
Sbjct: 550 NEPELSTQVVKGWLQDNEQ 568


>gi|260776484|ref|ZP_05885379.1| flagellar M-ring protein FliF [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607707|gb|EEX33972.1| flagellar M-ring protein FliF [Vibrio coralliilyticus ATCC BAA-450]
          Length = 582

 Score =  347 bits (889), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 110/554 (19%), Positives = 237/554 (42%), Gaps = 35/554 (6%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
               L R  +L+L+  I V +++ +   F+V  P    L    +  ++  +   L +  +
Sbjct: 49  GDLDLLRQVVLVLSISICVALIVMLF--FWVREPEMRPLGA-YDTEELIPVLDYLDQEKV 105

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
           ++++  +G++ISVP+S     ++++   GL ++   +G E+  +   FG++  +++    
Sbjct: 106 EYKL--DGNTISVPASDYNSLKLNMVRAGL-NNERQAGDEILMQDMGFGVSQRLEQERLK 162

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEA 190
            + E ++A+ I+ +  +  ARV + +P    F +     +ASV +     +  K    ++
Sbjct: 163 LSRERQLAKAIEEMKQVRKARVLLALPKQSVFVRHNQEASASVFLTLRTGTSLKQEEVDS 222

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKA 248
           +  +VA+AVP +    +TV D  G+LL++   +       K   + +  +  +   I+  
Sbjct: 223 VVDMVASAVPGMKPTRITVTDQHGRLLSSGSQDAASAARRKEHELERKQEQALRDKIDSV 282

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------T 299
           L   LG  N+ + V  +L+    +     +DP++   RS    +D              +
Sbjct: 283 LIPILGFGNYTAQVDIQLDFSAIEQTRKSFDPNTPSTRSEYTLEDYNNGNVVAGVPGALS 342

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           +QP +  ++ Q++  + D  +    S+     KE   N+E++T        +  + R ++
Sbjct: 343 NQPPADASIPQDVAQMKDGSLMGQGSV----HKEATRNFELDTTISHERRQSGIVNRQTV 398

Query: 360 AVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           AV + N+  +    G +  Q   D+ L  I +++  A G +  RGD + + SM F E ++
Sbjct: 399 AVAIKNRASVNPDTGETTYQPLSDAELQSIRQVLIGAVGFSESRGDLLNVLSMQFAEPEV 458

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
                V +      +       +ALV +V  L++      A+++L N   A   +     
Sbjct: 459 EVLTDVPIWEHPNFNDWVRWFASALVIIVVVLVLV---RPAMKKLLNP--ASDDDDDQLY 513

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
                PI +   T L+  D   +D      F  S +L    N +  +     +  ++   
Sbjct: 514 GPDGLPIGADGETSLIGGD---MDGGELFEFGSSIDLP---NLHKDEDVLKAVRALVANE 567

Query: 539 EERFAKILRKWARS 552
            E  A++++ W   
Sbjct: 568 PELAAQVVKNWMED 581


>gi|218778522|ref|YP_002429840.1| flagellar M-ring protein FliF [Desulfatibacillum alkenivorans
           AK-01]
 gi|218759906|gb|ACL02372.1| Flagellar M-ring protein FliF [Desulfatibacillum alkenivorans
           AK-01]
          Length = 520

 Score =  347 bits (889), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 125/497 (25%), Positives = 216/497 (43%), Gaps = 19/497 (3%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +L ++ Q F+S T     R + L  V+   +  F A  F+  +P Y  L+ +L   D  +
Sbjct: 4   LLQRIAQIFQSMT---PGRRIALVVVLAGLVAAFAAMFFWAGTPEYQVLFSQLSQEDAGK 60

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L E  I ++++  G+++ VP   V + R+ LAA+GLP   S  G+E+FD+ +SF  
Sbjct: 61  IVSKLQEQRIPYQLAQGGTAVLVPGEQVYELRLSLAAEGLPKGGS-VGFEIFDE-SSFST 118

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T F+Q++   RAL+GE++RTI   + + +A+V IV      F +  +  TASV++  + P
Sbjct: 119 TEFVQKLNYQRALQGELSRTIGQFNEVRSAKVLIVPAKDTVFVETTSPATASVLLDLVRP 178

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN----ILGKSLSIVQAIQ 238
                   I +LVA AV  L    VTV+D+TGK+      E +         L + Q  +
Sbjct: 179 LSSGQVSGIVNLVANAVEGLGTEQVTVVDTTGKVWFKGAGEGDDAALAANNRLEMQQQTE 238

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
             +  ++   L   +G       V AE++ D ++  E  YDPDS V RS +   +    E
Sbjct: 239 DRLAKHVQSMLEQIVGPGKAIVRVRAEMDFDQEEYSEETYDPDSVVVRSQQKRTEDTVKE 298

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
           T    + V    N P ++            T K++E +N EIN      T     + RLS
Sbjct: 299 TP-GGATVNTMNNQPGMASGAALGQ---SRTQKQDEVTNNEINRVQRRVTKVLPTITRLS 354

Query: 359 IAVVVNKGRLT----EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           +A V++    T    + +  +    +    L +   IV  A G +  R D +T++S  F 
Sbjct: 355 VAAVLDGTYKTVENQDGVSTAQFVPRTAEELKQFEGIVKNAMGYSEDREDQVTVSSFQFT 414

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
                +    +      ++++        +  +  LL     +  + +     + +K E 
Sbjct: 415 SLPGADMAAAEAP--SAITKYLNMYGKWALLTLLMLLTFVFVVRPILKSVKPPEPEKEET 472

Query: 475 GGKSILSPPPISSAVTT 491
                     +  A   
Sbjct: 473 QALEHQEMALLPEAPEE 489


>gi|332559789|ref|ZP_08414111.1| FliF2 [Rhodobacter sphaeroides WS8N]
 gi|332277501|gb|EGJ22816.1| FliF2 [Rhodobacter sphaeroides WS8N]
          Length = 533

 Score =  346 bits (888), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 130/553 (23%), Positives = 239/553 (43%), Gaps = 28/553 (5%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +  L+  +      GR R +++ + + + + +   ++     P    LY  L+ +    +
Sbjct: 6   VQNLISIWNDLD--GRRRAVVVGATVAMFLAVLGLSQL-AGRPPMALLYAGLQGAAAGEV 62

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
             AL      + +   G S+ V ++   + R+ LA +GLP++ + +GYEL D ++ FG T
Sbjct: 63  VTALEAQGAAYEVR--GDSVYVEAARRDEIRMKLAGEGLPATGA-AGYELLDGLSGFGTT 119

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
           S M +   +RA EGE+ARTI +   + AARVHI  P    F++   RPTASV +     +
Sbjct: 120 SQMFDAAYLRAKEGELARTILASPQVKAARVHIAQPAAQPFQRE-QRPTASVTVTTSGGA 178

Query: 184 -VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242
                A A +HLVA+AV  L   DV+V+DS   L+ + + + +      S       E+ 
Sbjct: 179 VTANQARAFKHLVASAVAGLQPEDVSVIDSVMGLIRSGDEKDSATAAGESRA----AELR 234

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
            N+ + L A  G       V  ++    + I E  +DP  +V  S    + +  S +++P
Sbjct: 235 SNVERLLEARAGPGRAVVEVSVDVETARESIVEKSFDPKGRVPISSETQEKS--SNSTEP 292

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
              VTV  N+P    +     +S  +T +  E  N+E++            + RL++AV+
Sbjct: 293 SPDVTVASNLPEGDAKGGTGGKS--STSETRETVNFEVSQTQRELMRQPGAIRRLTVAVL 350

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           V+  +     G    + + +  LA + ++V +A G++  RGD +T+ S+ F E       
Sbjct: 351 VDGIKTVADDGTVGWEPRPEEELAVLRELVGSAVGLDESRGDRLTLRSLAF-ETPPEAGT 409

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482
             +  F+  L      +++ +   V  L+   LGL  +R +              ++   
Sbjct: 410 LAETGFLSRLGAF--DLMSLIQIGVLALVALILGLFVVRPVLTAPPRPPAAPQPLALPGY 467

Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542
                A+T  +           + D+        + ++         RL  +IE  +   
Sbjct: 468 EGGEPALTGEI---------DDSGDLPDFPMVSSAPLDLDEEADPVARLRRLIEERQAES 518

Query: 543 AKILRKWARSEIE 555
            +ILR W   + E
Sbjct: 519 VEILRGWMEPQRE 531


>gi|213028767|ref|ZP_03343214.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 377

 Score =  346 bits (888), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 102/362 (28%), Positives = 168/362 (46%), Gaps = 29/362 (8%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 15  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 74

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 75  GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 132

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +              A+ HLV++AV  L  G+VT++D +G LLT
Sbjct: 133 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 192

Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  E  
Sbjct: 193 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 252

Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------------HVSDRKV 320
           Y P+    ++   S+    SE      P        N P                + +  
Sbjct: 253 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 312

Query: 321 PLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373
           P   +  N++        + E SNYE++     T  +   +ERLS+AVVVN   L +   
Sbjct: 313 PQTSTSTNSNNAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP 372

Query: 374 RS 375
             
Sbjct: 373 LP 374


>gi|254474533|ref|ZP_05087919.1| flagellar M-ring protein FliF [Ruegeria sp. R11]
 gi|214028776|gb|EEB69611.1| flagellar M-ring protein FliF [Ruegeria sp. R11]
          Length = 558

 Score =  346 bits (887), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 147/574 (25%), Positives = 243/574 (42%), Gaps = 37/574 (6%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           + Q+   +     L   + LI     ++ I+  +A     N+P    LY  LE      +
Sbjct: 1   MQQIKNVWAG---LDTRKRLIAVGATVIVILSVLAMSRVANTPTMQLLYAGLESGSAGDV 57

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
             AL +    + +   G SI VP++   + R+ LA++GLP++    GYEL D ++ FG T
Sbjct: 58  VRALDQRGTQYEVR--GGSIYVPATERDELRMTLASEGLPANGGR-GYELLDSLSGFGTT 114

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN-P 182
           S M +    RA EGE+ARTI +   +  ARVHI       F++  A PTASV +  +  P
Sbjct: 115 SQMFDAAYWRAKEGELARTIVASPHVTQARVHIANTGSNPFQRT-AEPTASVSVVPMGSP 173

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242
              + A AIR LV++AV  L + +V V+D+ G L+ + E        +    QA    I 
Sbjct: 174 ITPQQANAIRFLVSSAVTGLSVDNVAVIDANGALIGSPEAAAAAGAGTDDRSQA----IR 229

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
             + + + A +G  N    V  E   DT+ IRE   DP+S+V  S  + + A  S+    
Sbjct: 230 ERVMRLVEARVGHGNAVVEVSVETVTDTESIREKRVDPESRVAISTDVEERADSSQN--Q 287

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
              VTV  N+P           S  +T    E+ NYEI+            ++RL++AV+
Sbjct: 288 SGEVTVASNIPD--GDAASGDGSKASTSATRERVNYEISETEKEIIRGPGAIKRLTVAVL 345

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           +N    T   G +  + + +  L  + +++SAA G ++ RGD IT+ SM+ +        
Sbjct: 346 LNGVATTNAAGETVMEPRSEEELGALRELISAAVGFSADRGDVITLKSME-MPTIEPQGT 404

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL------RRLHNIDDAK------ 470
            V  S +D +     ++I      + TL++    +  +             D        
Sbjct: 405 VVSSSILDNIYLDAMSLIQMAALALVTLILGLFVIRPILSNQASVPALGAPDGDDMGGLP 464

Query: 471 --KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV----- 523
                 GG  + +P   ++    G + N +   +           +    +         
Sbjct: 465 ELPALGGGDFMANPNLGANLALDGEIQNGDGGFEPMGGMGMGSGLDELGGMGDLPALGGG 524

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIEDR 557
            +    RL  MI   +E   +ILR W   E E+R
Sbjct: 525 QENPVDRLRSMIGERQEETVQILRGWL-EENEER 557


>gi|261252322|ref|ZP_05944895.1| flagellar M-ring protein FliF [Vibrio orientalis CIP 102891]
 gi|260935713|gb|EEX91702.1| flagellar M-ring protein FliF [Vibrio orientalis CIP 102891]
          Length = 562

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 109/554 (19%), Positives = 233/554 (42%), Gaps = 35/554 (6%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
               L R  +L+L+  I V +++ +   F+V  P    L V  E  ++  +   L +  +
Sbjct: 29  GDLDLLRQVVLVLSISICVALIVMLF--FWVKEPEMRPLGV-YETEELIPVLDYLDQQKL 85

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
           D+++   G++I VP+S     ++ +   GL ++   +G ++  +   FG++  +++    
Sbjct: 86  DYKLE--GNTILVPTSDFNTLKLDMVRAGL-NNEKQAGDDILLQDMGFGVSQRLEQERLK 142

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEA 190
            + E ++++ I+ +  +  ARV + +P    F +     +ASV +     +  K    ++
Sbjct: 143 LSRERQLSKAIEEMKQVRKARVLLALPKQSVFVRHNQEASASVFLTLKTGTNLKQEEVDS 202

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEMNINKA 248
           +  +V++AVP +    +TV D  G+LL++   +   +   K   + +  +  +   I+  
Sbjct: 203 VVDMVSSAVPGMKPNRITVTDQHGRLLSSGTQDAASSARRKEHELERKQEQALREKIDSV 262

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------T 299
           L   LG  N+ + V  +L+    +     +DP++   RS    +D              +
Sbjct: 263 LIPILGFGNYTAQVDIQLDFSAVEQTRKSFDPNTPSTRSEYTLEDYNNGSVVAGVPGALS 322

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           +QP +  ++ Q++  + D  +    S+     KE   N+E++T           + R ++
Sbjct: 323 NQPPADASIPQDVAQMKDGSLLGQGSV----HKEATRNFELDTTISHERRQTGVVNRQTV 378

Query: 360 AVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           AV V N+  +    G +  Q   D+ L  I +++    G +  RGD + + SM F   + 
Sbjct: 379 AVAVKNRAIVNPDTGETTYQPMSDAELNSIKQLLIGTVGFSEARGDLLNVLSMQFAVPET 438

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
                V +      +       +ALV +V  L++      A+++L N   A   +     
Sbjct: 439 EAIADVPIWEHPNFNDWIRWFASALVIIVVVLVLV---RPAMKKLLNP--ASDEDDDQLY 493

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
                PI +   T L+  D   LD      F  S +L    N +  +     +  ++   
Sbjct: 494 GPDGMPIGADGETSLIGGD---LDGGELFEFGSSIDLP---NLHKDEDVLKAVRALVANE 547

Query: 539 EERFAKILRKWARS 552
            E  A++++ W + 
Sbjct: 548 PELAAQVVKNWMQD 561


>gi|332140582|ref|YP_004426320.1| flagellar MS-ring protein [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550604|gb|AEA97322.1| flagellar MS-ring protein [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 564

 Score =  345 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 109/560 (19%), Positives = 221/560 (39%), Gaps = 28/560 (5%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +    F  +  S    R + L  V+++ + + +    +   P Y  L  K+E  ++    
Sbjct: 23  ENKSGFMDTLGSADMMRQMALVVVLVICVAIAIFILIWSQEPDYRPL-AKMETQELIETL 81

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             +    I++++   G+++ V S      R+ +  QGL ++SS++G ++  +   FG++ 
Sbjct: 82  DYMDANQIEYKLE--GNTVYVRSDEFQNIRLGMTRQGL-TNSSDAGTDIIMQDMGFGVSQ 138

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
            ++      A E +IA TI+ I+ I  ARV +  P    F +   + +A+V++ A   +V
Sbjct: 139 RVEMERLKHAREQQIAATIEDIASIQKARVLLATPKENVFARREKKASATVVLTAKRGAV 198

Query: 185 Y--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQAIQHE 240
              + A+A+  +VA+AV N++   VTV DS G+LL +   +       K   I +  + E
Sbjct: 199 IAGEEADAVVDIVASAVQNMEPSKVTVTDSNGRLLNSGSQDSMSARARKEYEIERQREQE 258

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I+  L   LG+ N+ +     ++    +  +  Y+PD    RS  + ++   S   
Sbjct: 259 YLEKIDAILIPVLGIGNYTAQADVAMDFTAIEQTQRSYNPDLPAVRSEMIVEEN--SVGG 316

Query: 301 QPESAVTVEQNMPHVSDRKV-----PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
                     N P +             +++     KE   NYE++T    T      + 
Sbjct: 317 GVGGIPGALSNQPPLDSNIPENAVGGSQQTMPGRTAKESTRNYELDTTISHTKKQTGVIR 376

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           RLS++V V+  ++    G      +    +  I +++    G +  RGD++ + S+ F  
Sbjct: 377 RLSVSVAVDYTQVAGEDGAMTPTPRKQEEILNIRRLLQGGIGFDVTRGDSLEVVSVPFTR 436

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA-KKGEV 474
                     +            VI  LV +V  + V       LRRL N D+  +  E 
Sbjct: 437 MDTGEIEDAPLWEQPGFLPILKLVIGGLVIIVLIIFVI---RPMLRRLINPDETNEADEF 493

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
                L     + ++ T       +        +       +  + +         +  +
Sbjct: 494 DADEGLDLGDDTISMLTSDFDEGQVGFAPDGSLMLPDLHKDEDVLKA---------VRAL 544

Query: 535 IEINEERFAKILRKWARSEI 554
           +    E  A++++ W   + 
Sbjct: 545 VANEPELSAQVVKGWLMQDE 564


>gi|167043569|gb|ABZ08264.1| putative Secretory protein of YscJ/FliF family protein [uncultured
           marine microorganism HF4000_APKG2K17]
          Length = 560

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 119/556 (21%), Positives = 230/556 (41%), Gaps = 43/556 (7%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           Q   FF S +   R  IL+   ++L+ +   ++  F  N P +  LY  +E+ D   I  
Sbjct: 38  QFQDFFGSLSLAKRITILVALGIVLIGM---VSMIFVANQPSWAPLYSNMELGDAAAIVE 94

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L E  I + ++  G +I V    V +AR+ LA + +   S     +LF    S G T F
Sbjct: 95  KLQENQIPYLLAPGGRTIMVEPHKVDQARLTLAKEKVTPGSGVGFLDLF-STPSLGETEF 153

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV- 184
            Q +    A EGE+AR I +I+ + +A+V + +P    F       TA++ +   +    
Sbjct: 154 QQGVKFRVAQEGELARLISTINVVKSAKVSLAIPQKTLFSDNQEETTAAIALNLTSSGAG 213

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK---SLSIVQAIQHEI 241
            K  E I HLVA+AV  L   +V + D +G LL+    + +  GK   + S     ++E+
Sbjct: 214 RKQIETIIHLVASAVEGLSPRNVKITDQSGTLLSRGFSDTSASGKMNDNYSYKSRFENEL 273

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           E  I + +   +G D  R  V A L  D + I+E + DPD     S ++  ++     S 
Sbjct: 274 EAKIVRQIEEVVGKDRVRVNVSATLRFDRRTIKEELVDPDQTSVVSEQVVDESSTGTRSV 333

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
           P     V  N+P  + R+     ++    KK    N+E + + I       ++ RLS++V
Sbjct: 334 PVGPAGVTTNLPEATGREA---ATVSEFSKKNSTRNFESSRREIVLESAVGEVVRLSVSV 390

Query: 362 VVNKGRLTEVLGRS-----ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           +++  R   +          +    ++    I  +V AA G N +RGD++ + +M F   
Sbjct: 391 LLDNRRSQILDESGISLGRTNTPWTEAEKETIIGLVKAAMGFNEKRGDSVFVGNMPFEAA 450

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476
              +    +V+ ++        +++ + ++   L +  L +  +R +     +K  ++  
Sbjct: 451 VEDD----KVNEIEATRVRNKFILDIVRYVALGLAILSLIMFVIRPMVQRLSSKPEDLDL 506

Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536
              +             +P +  +     +                       ++L + +
Sbjct: 507 LMGMPATIGELEEEELEVPTERESGIPPRE-----------------------KILEIAK 543

Query: 537 INEERFAKILRKWARS 552
            +  + + ++  W R 
Sbjct: 544 QDPLKTSALIHTWLRE 559


>gi|323496555|ref|ZP_08101609.1| flagellar MS-ring protein [Vibrio sinaloensis DSM 21326]
 gi|323318399|gb|EGA71356.1| flagellar MS-ring protein [Vibrio sinaloensis DSM 21326]
          Length = 582

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 110/554 (19%), Positives = 235/554 (42%), Gaps = 35/554 (6%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
               L R  +L+L+  I V +++ +   F+V  P    L    E  ++  +   L +  +
Sbjct: 49  GDLDLLRQVVLVLSISICVALIVMLF--FWVKEPEMRPLGA-YETEELIPVLDYLDQQKM 105

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
           ++++  +G++I VP+S     R+ +   GL +   N+G ++  +   FG++  ++     
Sbjct: 106 EYKL--DGNTILVPTSEYNSLRLDMVRAGL-NQEKNAGDDILLQDMGFGVSQRLELERLK 162

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEA 190
            + E ++++ I+ +  +  ARV + +P    F +     +ASV +     +  K    ++
Sbjct: 163 LSRERQLSKAIEEMKQVRKARVLLALPKQSVFVRHNQEASASVFLTLKTGANLKQEEVDS 222

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKA 248
           +  +V++AVP +    +TV D  G+LL++   +       K   + +  +  +   I+  
Sbjct: 223 VVDMVSSAVPGMKPNRITVTDQHGRLLSSGSQDPASAARRKEHELERKQEQALRDKIDSV 282

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------T 299
           L   LG  N+ + V  EL+    +     +DP++   RS    +D              +
Sbjct: 283 LIPILGFGNYTAQVDIELDFSAVEQTRKSFDPNTPSTRSEYTLEDYNNGSVVAGVPGALS 342

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           +QP +  ++ Q++  + D       S+     KE   N+E++T           + R ++
Sbjct: 343 NQPPADASIPQDVAQMKDGSGTGQGSV----HKEATRNFELDTTISHERRQTGVVNRQTV 398

Query: 360 AVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           AV + N+  +    G +  Q   ++ LA I +++  A G +  RGD + + SM F E ++
Sbjct: 399 AVAIKNRAIVNPDTGETTYQPLSEADLASIRQVLIGAVGFSEARGDLLNVLSMQFAEPEV 458

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
                V +      +       +ALV +V  L++      A+++L N   A   +     
Sbjct: 459 EVMADVPIWEHPNFNDWVRWFASALVIIVVVLVLV---RPAMKKLLNP--ASDEDDDQLY 513

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
                PI +   T L+ +D   L+      F  S +L    N +  +     +  ++   
Sbjct: 514 GPDGMPIGADGETSLIGSD---LEGGELFEFGSSIDLP---NLHKDEDVLKAVRALVANE 567

Query: 539 EERFAKILRKWARS 552
            E  A++++ W + 
Sbjct: 568 PELAAQVVKNWMQD 581


>gi|239996428|ref|ZP_04716952.1| flagellar MS-ring protein [Alteromonas macleodii ATCC 27126]
          Length = 564

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 108/560 (19%), Positives = 218/560 (38%), Gaps = 28/560 (5%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +    F  +  S    R + L  V+++ + + +    +   P Y  L  K+E  ++    
Sbjct: 23  ENKSGFMDTLGSADMMRQMALVVVLVICVAIAIFILIWSQEPDYRPL-AKMETQELIETL 81

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             +    ID+++   G+ + V S      R+ +  QGL  +S ++G ++  +   FG++ 
Sbjct: 82  DYMDANQIDYKLE--GNIVYVRSDEFQNIRLGMTRQGLTKAS-DAGTDIIMQDMGFGVSQ 138

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
            ++      A E +IA TI+ I+ I  ARV + MP    F +   + +A+V++ A   +V
Sbjct: 139 RVEMERLKHAREQQIAATIEDIASIQKARVLLAMPKENVFARREKKASATVVLTAKRGAV 198

Query: 185 Y--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQAIQHE 240
              +  +A+  +VA+AV N++   VTV DS G+LL +   +       K   I +  + E
Sbjct: 199 IAGEEVDAVVDIVASAVQNMEPSKVTVTDSNGRLLNSGSQDSMSARARKEYEIERQREQE 258

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I+  L   LG+ N+ +     ++    +  +  Y+PD    RS  + ++   S   
Sbjct: 259 YLEKIDAILIPVLGIGNYTAQADVTMDFTAMEQTQRSYNPDLPAVRSEMIMEEN--SVGG 316

Query: 301 QPESAVTVEQNMPHVSDRKV-----PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
                     N P +             +++     KE   NYE++T    T      + 
Sbjct: 317 GVGGIPGALSNQPPLDSNIPENAVGGSQQTMPGRTAKESTRNYELDTTISHTKKQTGVIR 376

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           RLS++V V+  ++    G      +    +  I +++    G +  RGD++ + S+ F  
Sbjct: 377 RLSVSVAVDYTQVAGEDGAMTPTPRKQEEILNIRRLLQGGIGFDVTRGDSLEVVSVPFTR 436

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA-KKGEV 474
                     +            V+  LV +V  + V       LRRL N D++    E 
Sbjct: 437 MDAGEIEDAPIWEQPGFLPILKLVVGGLVIIVLIIFVI---RPMLRRLINPDESNDADEF 493

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
                L     + ++ T       +        +       +  + +         +  +
Sbjct: 494 DADEGLDLGDDTISMLTSDFDEGQVGFAPDGSLMLPDLHKDEDVLKA---------VRAL 544

Query: 535 IEINEERFAKILRKWARSEI 554
           +    E  A++++ W   + 
Sbjct: 545 VANEPELSAQVVKGWLMQDE 564


>gi|159045804|ref|YP_001534598.1| flagellar MS-ring protein [Dinoroseobacter shibae DFL 12]
 gi|157913564|gb|ABV94997.1| flagellar MS-ring protein FliF [Dinoroseobacter shibae DFL 12]
          Length = 558

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 140/573 (24%), Positives = 246/573 (42%), Gaps = 36/573 (6%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++Q+   +   T LG    LI  + +L      +A      +P Y  LY  LE +    +
Sbjct: 3   MEQIRTTW---TGLGLRNQLIAIAAVLGVFGALLALSRTALAPDYALLYSGLEPAAAGEV 59

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L +  I  ++   G+ I V  +   + RI LAA+GLP++   +GYEL D ++ FG T
Sbjct: 60  IANLEQRGIAHQVR--GTGIYVDRAQQDRLRIALAAEGLPAAGG-AGYELLDSLSGFGTT 116

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
           S M +    RA EGE+ARTI S + + +ARVH+       F +    PTASV +     S
Sbjct: 117 SQMFDAAYWRAKEGELARTIASSASVRSARVHVSAASSRPF-EARKEPTASVFLTPARGS 175

Query: 184 VYK-SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242
           +    A+A+R+LV++A+  +   +V+++D+    +   E   + + +  +   A    ++
Sbjct: 176 LSGGQADALRYLVSSAIAGMRPENVSIIDAVSGTMLTGEGPASAIAEQTTKADA----LK 231

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
           + I + L A +GV N    V  E   D ++I E V+DP+  V  S   ++   +S +   
Sbjct: 232 LRIERLLEARVGVGNAFVEVNIETERDRERIVERVFDPNGTVPVSRETTESTLQS-SRDS 290

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
           E +V+V  N+P   D      +  +N  +  E+ NYE++             +RL++AV+
Sbjct: 291 EGSVSVASNLPD-GDANAESAKDAQNETETRERINYEVSETQREIERGPGATKRLTVAVL 349

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           VN        G  +   + D  +A++ ++V +  G +  RGD IT+ SM+   +   +  
Sbjct: 350 VNGIPSVSEDGTVSFTPRPDREMADLEELVKSTVGFDETRGDVITLRSMEMPGSAAPDPV 409

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482
                F           ++ +      L+  FLGL  LR +     A+      ++   P
Sbjct: 410 ESSGWFAP----QPVDTMSVIQIAALALVTLFLGLFVLRPILKSAPAQAQLPAAETAGLP 465

Query: 483 PPISSAVTTG---------LMPNDNIALDSSNQDIFSHSRNLQSR---------INSYVS 524
            P  SA   G         L  +   A   +  ++ S   +  +           +    
Sbjct: 466 APAGSATRAGETGSNLVARLQQSAGTAAKEATPEVLSGEISTDASDVAAAARTLTSQDEE 525

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDR 557
           +    RL  +I+  E    +IL  W     E R
Sbjct: 526 RDPVTRLRQLIKERETETIEILSSWINENEEVR 558


>gi|221636057|ref|YP_002523933.1| flagellar M-ring protein FliF [Thermomicrobium roseum DSM 5159]
 gi|221157932|gb|ACM07050.1| flagellar M-ring protein FliF [Thermomicrobium roseum DSM 5159]
          Length = 530

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 129/561 (22%), Positives = 228/561 (40%), Gaps = 41/561 (7%)

Query: 3   ILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           +L +   +++S       L + R + + +V L  +              Y  L+  L   
Sbjct: 1   MLRRFAPYWESVRERWDGLSQNRRVAIVAVGLAALFTVALLLLLQPPQQYAPLFTGLSAD 60

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
           D   I   L +  + +++S++G++ISVP   V K R+ LAAQGLP S +  G+ELFD+ +
Sbjct: 61  DAAAIIDQLRQQGVPYKLSNDGTTISVPVEQVAKLRLALAAQGLPKSGT-LGFELFDR-S 118

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178
           SFG+T F Q +   RALEGE+ARTI  + G+ +ARVH+V+P+   F       TA+V+++
Sbjct: 119 SFGVTDFQQRVNYQRALEGELARTISQLDGVRSARVHLVIPEESLFSDQQQPTTAAVVLQ 178

Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS--LSIV 234
               S    +    + HLV+A+VP L    VTV+D +G  L +        G S  L   
Sbjct: 179 LKPGSRLTDEQVRGVVHLVSASVPGLQPEHVTVVDESGNALWSGGGVAAAGGMSDHLKAQ 238

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSIRLSK 292
           +A +  +   +   +A  +G +N    V A  + D +Q+   +Y P+      RS +   
Sbjct: 239 RAFETAMATQLQTVVARVVGNNNAAVQVSASFDWDQRQVDSEIYSPNGTQPQVRSQQERV 298

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
                  S P     V+ N+    +      ++ + ++ +E   NYE++ +         
Sbjct: 299 QTSEGTASGPIGIPGVDSNVGSYQEGAA--QQNQQRSELRETTVNYELSRQVERVVQAPG 356

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
           K++RLS+AVV+N   +   +              ++  +V+AA GI   RGD +T++ + 
Sbjct: 357 KVQRLSVAVVLNSAAVDPAVA------------EQVRDLVAAAAGIVPERGDQVTVSVVP 404

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F       S          L             ++  LL   +    L    +       
Sbjct: 405 FTTATAEESAAQP-----TLMDRLLEAARLGAIVLIPLLALLIAWRVLAAQRSALPPVPR 459

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
                 +L      +A  +            +   +   S              +   L 
Sbjct: 460 YEVATQVLPGAAAGAAAPSVAGGGAAGLPGQAEAALKPPSGPPP----------TLRELQ 509

Query: 533 HMIEINEERFAKILRKWARSE 553
            + + +    A ++R W   E
Sbjct: 510 ELAKKDPATVAHVVRAWLNEE 530


>gi|254510010|ref|ZP_05122077.1| flagellar M-ring protein FliF [Rhodobacteraceae bacterium KLH11]
 gi|221533721|gb|EEE36709.1| flagellar M-ring protein FliF [Rhodobacteraceae bacterium KLH11]
          Length = 530

 Score =  344 bits (882), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 143/553 (25%), Positives = 234/553 (42%), Gaps = 26/553 (4%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           + Q+   +    SL R + +I+A  + +  +  +A    V +P    LY  LE      I
Sbjct: 1   MQQIGTVWA---SLDRRKQIIVAGAVALVFLGVLAMSRIVTAPSMTLLYAGLESGAAGDI 57

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
             AL +  + + I   G SI VP +   + R+ LA++G+P++  N GYEL D ++ FG T
Sbjct: 58  VRALDQRGVAYEIR--GGSIYVPGAQRDELRLTLASEGMPANG-NRGYELLDSLSGFGTT 114

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
           S M +    RA EGE+ARTI     +  ARVHI       F++  A PTASV +      
Sbjct: 115 SQMFDAAYWRAKEGELARTIVGSPYVSQARVHIANGSANPFQRSVA-PTASVYLVPSGAQ 173

Query: 184 VY-KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242
           +    A+AIR LVA+A+  L   +VTV+DS G ++ A E             Q     + 
Sbjct: 174 ITGDQAKAIRFLVASAISGLAPENVTVVDSNGAVIGAQETAAAADTADDKARQ-----LR 228

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
             + + + A +G  N    V  +    T+ IRE  +DP  +V  S  + + +    T   
Sbjct: 229 EKVLRLVEARVGTGNAVVEVSVDTVTKTESIRERRFDPKGRVAISTDVEERSDN--TRNQ 286

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
            S VTV  N+P           +  N  +  E+ NYE++   +        ++RL++AV+
Sbjct: 287 SSDVTVASNLPD--GDGAGGDETNSNATQTRERVNYEVSETELEVHRAPGAIKRLTVAVL 344

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           VN  R+ +  G  + +      L  + ++V++A G ++ RGD IT+ S+D L        
Sbjct: 345 VNGARMVDGNGIESFEPMPQPELDALEELVASAVGFDADRGDVITLKSLD-LPAVEPQGT 403

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482
               S    +     ++I   V  + +L++    +  +        A             
Sbjct: 404 LASASIWQRIHLDAMSLIQMAVLALVSLVLGLFVIRPILTKSAAAPALLPAANAPEADVA 463

Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542
           P ++  + TG   N    L    Q       N          + +  RL  MI   +E  
Sbjct: 464 PYLTGEIATGDAGNFT-PLPDPGQSNVPAIANAPG-------EDAVDRLRAMIGDKQEET 515

Query: 543 AKILRKWARSEIE 555
            +ILR W     E
Sbjct: 516 VEILRSWLEEGEE 528


>gi|312884805|ref|ZP_07744497.1| flagellar MS-ring protein [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367457|gb|EFP95017.1| flagellar MS-ring protein [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 582

 Score =  343 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 120/566 (21%), Positives = 235/566 (41%), Gaps = 37/566 (6%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           ++   + S       R L+L++V+   +   +    + ++  +  LY + E  D   I  
Sbjct: 33  KVKSLWSSS-----QRNLVLSAVLAAIVAAIIVVALWSSTQSFRPLYSQQESFDTGDIIS 87

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L   NI++R+ +    + VP   V + R+ LAA+G+  +    G +   + +S G + F
Sbjct: 88  VLEAENINYRLQEQNGQVLVPEGEVARIRMLLAAKGV-KAKLPMGLDSLQEDSSLGTSQF 146

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAINP-- 182
           ++       LEGE+ RTI S++ +  ARVH+ +P    F +     P+ASVM+       
Sbjct: 147 IETARYRHGLEGELIRTIISLNSVANARVHLAIPRQTLFVRQDREAPSASVMLELRPGEE 206

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA---NEMERNILGKSLSIVQAIQH 239
              +  EAI +LV  +V  +    V+V+D  G+LL+A   +E    +  K L   + ++ 
Sbjct: 207 LNSEQVEAIVNLVVGSVTGMKPEQVSVVDQYGRLLSAEIGSEQAGKVNAKYLEYQKNVEK 266

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           +I    +  L   LG  N+R  V A++N    +  + + D    V++   ++ ++     
Sbjct: 267 QIIQRASDMLTPILGPSNYRVQVSADMNFSQVEETQEILDATPVVQKEHTITNNSVDQ-- 324

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
                      N P V+  + P   S     + E    Y + +    T +   K+E+LS+
Sbjct: 325 -IALGVPGTLSNQPPVT-GEAPTQDSQNTNARAEINRQYAVGSSVRRTQYQQGKVEKLSM 382

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           +V++N+    + L         D    +I+ +++ A GI + RGD+++I S  F    + 
Sbjct: 383 SVLLNESAAPDGL------AWTDDEKNQISTMLADAVGITNDRGDSLSIMSFSFTPISI- 435

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
            +      + D       TV   + +++G +L   +    LR L       + +      
Sbjct: 436 EAPVSLPWWQD------PTVQQPMRYVIGGMLGMAMIFFVLRPLIMHLTGAQNQNQSDDS 489

Query: 480 LSP---PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR-----L 531
           ++P   P   +  T      + +     ++     S  L    +      S L      L
Sbjct: 490 VAPQDEPSYDNLQTRAEREREEVLNRKLSERGIEASNGLDVGNDMLPPAGSPLEIQLKHL 549

Query: 532 LHMIEINEERFAKILRKWARSEIEDR 557
             + +   ER A++L++W      +R
Sbjct: 550 QLIADEEPERVAEVLKQWVNENEHNR 575


>gi|120597294|ref|YP_961868.1| flagellar MS-ring protein [Shewanella sp. W3-18-1]
 gi|146294561|ref|YP_001184985.1| flagellar MS-ring protein [Shewanella putrefaciens CN-32]
 gi|120557387|gb|ABM23314.1| flagellar M-ring protein FliF [Shewanella sp. W3-18-1]
 gi|145566251|gb|ABP77186.1| flagellar M-ring protein FliF [Shewanella putrefaciens CN-32]
          Length = 558

 Score =  343 bits (881), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 129/563 (22%), Positives = 221/563 (39%), Gaps = 40/563 (7%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            ++  + Q +       R   +I  +++ V +   +    +  +  Y  LY   E  D +
Sbjct: 20  GLIADMTQKWHKFNRGDRQ--VIALALLAVVVASVIVLMLWTATAGYRPLYGSQENVDTS 77

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           ++   L    I +R+  N  ++ V    VG AR+ LAA+G+  +   SG E  D  N+ G
Sbjct: 78  QVLNVLEAEGIHYRLEANTGAVLVAEEQVGNARMLLAAKGV-KAKVPSGMEALD-NNALG 135

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIR-- 178
            + FM++     +LEGE+ARTI S+  + AARVH+ +P    F +     PTASVM++  
Sbjct: 136 TSQFMEQAKYRHSLEGELARTIMSLKLVRAARVHLAIPKQSLFIRQEPELPTASVMLQLD 195

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG----KSLSIV 234
                     EAI +LVA +V  L   ++ V+D  G+ L+ N      L     K L   
Sbjct: 196 PNTRLSESQVEAIVNLVAGSVTGLTASNIKVVDQDGRYLSENISGNQDLSQSRNKQLQYT 255

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
           + ++H +  N    L   LG DNF+  V A++N +  +  +   DP + V    +     
Sbjct: 256 RELEHSLVANAASMLEPVLGHDNFQVRVTAKVNFNQVEETKESLDPQNVV---TQERTSI 312

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
             S  S          N P          ++     K+EE   Y++        +   +L
Sbjct: 313 DDSSNSIAAGIPGALSNKPPQVGTAATDDKTR--NLKQEESRQYDVGRSVRHVRYQQMQL 370

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           E LS++V++N      V          ++ L +   +V  A G ++ RGD+ TI + +F 
Sbjct: 371 ENLSVSVLINSAAGQGVFNN-------EAQLVKFGNMVKDAIGFSAARGDSFTINAFEFT 423

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL-----HNIDDA 469
              +    T      +    +       L +++G +L   L L  LR L           
Sbjct: 424 PTVVAEIPTSPWWQSENYQSY-------LRYIIGGILGFGLILFVLRPLVKHLTRTAQIT 476

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
                      +        T    PN    L S++   +  S+ L    +    K   L
Sbjct: 477 APSIEPAALSAASANALDGPTVDYAPNQAHQLPSAD---WLGSQGLPEPGSPLTVKMEHL 533

Query: 530 RLLHMIEINEERFAKILRKWARS 552
            L  +      R A+++  W   
Sbjct: 534 AL--LANKEPARVAEVIAHWIGD 554


>gi|119947167|ref|YP_944847.1| flagellar MS-ring protein [Psychromonas ingrahamii 37]
 gi|119865771|gb|ABM05248.1| flagellar M-ring protein FliF [Psychromonas ingrahamii 37]
          Length = 582

 Score =  343 bits (881), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 117/555 (21%), Positives = 237/555 (42%), Gaps = 27/555 (4%)

Query: 8   LQFFKSGTSLGR--TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           L  +     L +   +   + +V L  ++  +    + +S +Y  LY   E  + + I  
Sbjct: 45  LSVWGKILYLLKNSRKSFAVITVFLTALVTILVILLWSSSSNYRPLYGIQEPYNNSDILA 104

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
           AL   NI +++  +   I V    V K R+ LAA+G+  ++   G  +  K ++ G + F
Sbjct: 105 ALEAENIKYQMQPDTGLILVEDGEVAKIRMLLAAKGV-KATLPEGLSVLGKQSALGTSQF 163

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRAINPSV 184
           ++       LEGE+A+TI S++ I  ARVH+ +P    F  +     TA+VM+   +   
Sbjct: 164 IENARYNLGLEGELAKTIMSLNAINNARVHLAIPKENLFVGRGDNIATAAVMLDVKSGDK 223

Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQH 239
                  +I +LVA +V NL+   V++ D +G+LL+ +  +        K L     I+ 
Sbjct: 224 LSVAQITSIMNLVAGSVNNLNPESVSITDQSGRLLSDDVNDGEYSLASSKQLEYKAGIEQ 283

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           +I+      L   LG +NFR    A+++   +Q     +D  + V  S    +D  +S+ 
Sbjct: 284 QIKKQAKSMLIPILGENNFRIESAADIDFSKKQETMERFD-ATPVLLSEMSIEDDDQSDI 342

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           +          + P V D +   P + +   ++E    Y + +    T +   K+  +S+
Sbjct: 343 AI--GIPGSLSSTPPVVDGQESTPNNSKKKLRRELNRKYAVGSSVTHTEYQQGKINHISL 400

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           +VV+NK           D       L++IN ++S+A G++  RGD+I +TS  F   Q+ 
Sbjct: 401 SVVINKDIAP-------DGEWTADELSKINAMISSAVGLDLNRGDSINVTSFTFSPIQVT 453

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
           N       + +   +   +++  ++  +  +++  + L  L +   ++++ K      + 
Sbjct: 454 N-PVAAAWYEETRWQ---SLLKIIISGLVAMMLIIVVLRPLIKHITVNNSAKDAGPLPAE 509

Query: 480 LSPPPISSAVTTGLMPN--DNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
                 S+               +  +     S  + L S  +    +   L+L  + + 
Sbjct: 510 HQAIAQSTQDKEKEFAQRLAEYGIGETASGNDSMMQMLPSPNSPLSVQIQHLQL--ISKE 567

Query: 538 NEERFAKILRKWARS 552
           +  R ++IL+ W  +
Sbjct: 568 HPNRVSEILKNWVNA 582


>gi|315180474|gb|ADT87388.1| flagellar M-ring protein [Vibrio furnissii NCTC 11218]
          Length = 568

 Score =  343 bits (880), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 125/574 (21%), Positives = 232/574 (40%), Gaps = 48/574 (8%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           A L+    F+ S       R +++ ++  +     +    + +S  Y  LY      D +
Sbjct: 20  AALENAKSFWSSS-----QRNVVIITIFSMISAAIIVIMLWASSEDYRPLYSNSSNYDSS 74

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           ++   L ++ + + ++ +   I VP+  V   R+ LAA+GL      SG++  +   + G
Sbjct: 75  QVLQLLDQSGLKYELNKDSGQIMVPAKDVATTRMMLAAKGL-KQQLPSGFDALESKGALG 133

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK-IGARPTASVMIRAI 180
            + FM+      ALEGE+AR+I ++  I  ARVH+ +P    F++    +  ASVM++ I
Sbjct: 134 ESQFMESARYRHALEGELARSIVTMESIALARVHLAIPKTSLFKRKDQEQAQASVMVQLI 193

Query: 181 NPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL---GKSLSIVQ 235
           +    KSA+  +I +LV+ A+  L   +V V+D  G+LL+ +    +I     +     +
Sbjct: 194 DGMDLKSAQVTSIVNLVSGAIIGLKPENVRVIDQYGRLLSKDGSMGDISHSGDRQNDFRR 253

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            ++  +    +  L   LG  NFR  V A+++   +Q  E  Y   + V RS  +  D  
Sbjct: 254 TLETRLVSQASDMLTPILGAANFRVQVAAKVDFSKRQETEESYG--APVMRSETIFNDEN 311

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
               +          N P V+D          N  + E +  Y +  + +   H    LE
Sbjct: 312 SGSMAL--GIPGALSNTPPVTDGDTNTTPESRNV-RNEAKREYAVGGRVVHVQHQQGVLE 368

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           +L+I+V+VN+   T        +G  D  LA I  ++  A G ++ RGD I ++S  F+ 
Sbjct: 369 KLTISVIVNEHNATS-------EGWSDESLARITNVIQNAVGYDAVRGDQIYVSSFPFVV 421

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI-----DDAK 470
           + +         + D       +V  A  +  G L+   L +  LR L        +D  
Sbjct: 422 SAM-KEVEPLAWYKD------PSVFQAAKYGFGVLMSVLLIVLVLRPLAQFLTKPDNDES 474

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS------ 524
                   + +   + +A    L+ +      S           L        +      
Sbjct: 475 SDAKALNELSAESAMGTAGDEALLASQAGQAPSLPNHSPQELDTLSLDAAGIKALHDTLP 534

Query: 525 ------KQSDLRLLHMIEINEERFAKILRKWARS 552
                 +     L  + + + +R  +ILR W  +
Sbjct: 535 ESDSPLEIQIQHLKTIAQNDPQRVTEILRTWMNA 568


>gi|260768771|ref|ZP_05877705.1| flagellar M-ring protein FliF [Vibrio furnissii CIP 102972]
 gi|260616801|gb|EEX41986.1| flagellar M-ring protein FliF [Vibrio furnissii CIP 102972]
          Length = 568

 Score =  343 bits (880), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 125/574 (21%), Positives = 232/574 (40%), Gaps = 48/574 (8%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           A L+    F+ S       R +++ ++  +     +    + +S  Y  LY      D +
Sbjct: 20  AALENAKSFWSSS-----QRNVVIITIFSMISAAIIVIMLWASSEDYRPLYSNSSNYDSS 74

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           ++   L ++ + + ++ +   I VP+  V   R+ LAA+GL      SG++  +   + G
Sbjct: 75  QVLQLLDQSGLKYELNKDSGQIMVPAKDVATTRMMLAAKGL-KQQLPSGFDALESKGALG 133

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK-IGARPTASVMIRAI 180
            + FM+      ALEGE+AR+I ++  I  ARVH+ +P    F++    +  ASVM++ I
Sbjct: 134 ESQFMESARYRHALEGELARSIVTMESIALARVHLAIPKTSLFKRKDQEQAQASVMVQLI 193

Query: 181 NPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL---GKSLSIVQ 235
           +    KSA+  +I +LV+ A+  L   +V V+D  G+LL+ +    +I     +     +
Sbjct: 194 DGMDLKSAQVTSIVNLVSGAIIGLKPENVRVIDQYGRLLSKDGSMGDISHSGDRQNDFRR 253

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            ++  +    +  L   LG  NFR  V A+++   +Q  E  Y   + V RS  +  D  
Sbjct: 254 TLETRLVSQASDMLTPILGAANFRVQVAAKVDFSKRQETEESYG--APVMRSETIFNDEN 311

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
               +          N P V+D          N  + E +  Y +  + +   H    LE
Sbjct: 312 SGSMAL--GIPGALSNTPPVTDGDTNATPESRNV-RNEAKREYAVGGRVVHVQHQQGVLE 368

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           +L+I+V+VN+   T        +G  D  LA I  ++  A G ++ RGD I ++S  F+ 
Sbjct: 369 KLTISVIVNEHSATS-------EGWSDESLARITNVIQNAVGYDAVRGDQIYVSSFPFVV 421

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI-----DDAK 470
           + +         + D       +V  A  +  G L+   L +  LR L        +D  
Sbjct: 422 SAM-KEVEPLAWYKD------PSVFQAAKYGFGVLMSVLLIVLVLRPLAQFLTKPDNDES 474

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS------ 524
                   + +   + +A    L+ +      S           L        +      
Sbjct: 475 SDAKALNELSAESAMGTAGDEALLASQAGQAPSLPNHSPQELDTLSLDAAGIKALHDTLP 534

Query: 525 ------KQSDLRLLHMIEINEERFAKILRKWARS 552
                 +     L  + + + +R  +ILR W  +
Sbjct: 535 ESDSPLEIQIQHLKTIAQNDPQRVTEILRTWMNA 568


>gi|51246508|ref|YP_066392.1| flagellar M-ring protein (FliF) [Desulfotalea psychrophila LSv54]
 gi|50877545|emb|CAG37385.1| related to flagellar M-ring protein (FliF) [Desulfotalea
           psychrophila LSv54]
          Length = 545

 Score =  343 bits (879), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 130/551 (23%), Positives = 244/551 (44%), Gaps = 41/551 (7%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
             FF        +R L L +V+++ +  F        +     LY  L  +D   ++  L
Sbjct: 29  KNFFTLLRDWPLSRQLSLGAVLILCLAAFATIIIQTRTVDQQLLYANLSATDAAAVTEWL 88

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
               I + + D+G S+ + S+ + +AR+ LAA GLP S    G+E+FDK N F LT+++Q
Sbjct: 89  KGQKIPYSLKDSGKSVWIGSNKIYQARLDLAANGLP-SGGGVGFEVFDKQN-FALTNYVQ 146

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV--Y 185
           +I   RAL+GE+ARTI S++ I + RVH+ +P+   F+    + TASV++  +       
Sbjct: 147 KINYSRALQGELARTISSLAPIESTRVHLAIPEKRLFKNQQKQATASVILSLVPGKTLSQ 206

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAIQHEIE 242
           +  E I +LVA +VP L+  +V VLDS+G +L     N  +R +    L+  + I+ ++E
Sbjct: 207 EQVEGIAYLVAGSVPGLETDNVKVLDSSGVILGDREQNGGDRALSSDMLAFQKEIETQME 266

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
           M     L   +G D+    V A ++    +  E  +D D  V RS +++ ++  S  ++ 
Sbjct: 267 MRAQDLLTRTMGADHALVRVTATVDFAKVEKTEEFFDADDPVIRSEQINNES--SRGAEA 324

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
                VE N+     +    P +++N       +NYEI+       +    +++LS++V+
Sbjct: 325 GGIPGVESNLQGTQKKSGTGPSAVKNG----RTTNYEISKTISHIVNPVGTVKKLSVSVL 380

Query: 363 V-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           V ++ +L       +      + L  +  +V++A G+ + RGD I + SM F ++     
Sbjct: 381 VADRQKLDPDTQEPSYTPFSTTELKALENMVASAIGLVATRGDVINVISMPFFQDPQEFE 440

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
                +    L R+   ++  L+ L+    + FL +  + +    +              
Sbjct: 441 TDQDDTME--LVRNSMPLVKYLLALLAIFFLYFLLVRPILKTVKGEV------------- 485

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
              +    T   M  +        Q      +   + +       +++R   M E     
Sbjct: 486 ---LQHNKTVDEMEKE-------QQRRNQEKKEESTPLPPLDIALANIRQEVMQEHTP-- 533

Query: 542 FAKILRKWARS 552
            A I++ W   
Sbjct: 534 TAFIVKNWIHE 544


>gi|308050036|ref|YP_003913602.1| flagellar M-ring protein FliF [Ferrimonas balearica DSM 9799]
 gi|307632226|gb|ADN76528.1| flagellar M-ring protein FliF [Ferrimonas balearica DSM 9799]
          Length = 540

 Score =  342 bits (878), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 117/563 (20%), Positives = 225/563 (39%), Gaps = 47/563 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           MA L  L   ++  +   R  ++I  +V+   +   +    +  S  Y  LY   E  D 
Sbjct: 18  MARLRGLWARWQGASRSDRQVLVI--AVMATVVATVIVLVLWTASRGYRPLYGSQEGFDS 75

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L    I +R+  +   I V    +G+AR+ LAA+G+  +   +G EL DK  + 
Sbjct: 76  AEIIEVLEAEKIPYRMQADSGQILVLEDQLGRARMTLAARGI-RAKMPAGMELLDKAGAL 134

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG-ARPTASVMIRA 179
           G + F++E      LEGE++RTI ++  + +ARVH+ +P    F +    +P+A+VM+  
Sbjct: 135 GSSQFLEEARYRLGLEGELSRTIMAMKAVRSARVHLAIPKRTLFIRQQPEKPSAAVMLEL 194

Query: 180 INPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG----KSLSI 233
            + +       EAI +LV  AV  + +  V+V+D  G+LL+A+      L     + L+ 
Sbjct: 195 YSGATLSRDQVEAIVNLVVGAVTAMPVDAVSVVDQNGRLLSADLELAQELARSGERQLTY 254

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293
            Q ++  +    +  L   LG  N+R  V A +N D  +      DP++ V    R +  
Sbjct: 255 NQQMEQALNQRASDMLQPILGYGNYRVQVAARVNFDQIEETREQVDPENTVV--TREASR 312

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
           +     +          N P  ++         +N   + E+  +E +     T     +
Sbjct: 313 SDTRGGNLAIGIPGALSNQPPATNADEEEAAPAQNLSSESERY-FETSRAVRHTKFQQAQ 371

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           LERLS++V++N          S       + L ++ ++V  A G  + RGD++++ +  F
Sbjct: 372 LERLSVSVLLN----------SEAGQWSQAQLDQLGQLVQDAIGFEAARGDSLSLHAFPF 421

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
               +     +        ++ +   +  L+  +  L +    L  L +       ++  
Sbjct: 422 AAQPVPEMEPLPWW----QTQEYQLYLRYLIGALLGLGLILFVLRPLVKHLTRTVEQEKA 477

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
               +  +  P    V   + P                   L    ++   +   L L  
Sbjct: 478 QAEAAQAALLPKHEPVVEPVTPE------------------LPPPGSALSVQLEHLSL-- 517

Query: 534 MIEINEERFAKILRKWARSEIED 556
           +      R A+++ +W  +   D
Sbjct: 518 LANEEPARVAEVITQWMSNNERD 540


>gi|74101647|gb|AAZ99737.1| FliFL [Aeromonas hydrophila]
          Length = 580

 Score =  342 bits (878), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 127/559 (22%), Positives = 232/559 (41%), Gaps = 39/559 (6%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLF-MAARFFVNSPHYDNLYVKLEVSDV 60
           +   ++ +  ++  SL R    IL   +L  I+   +    + +S +Y  LY K E+ D 
Sbjct: 14  SFRTRVQEGLRNWRSLSRDNKSILTIALLAAIVAGTIVVILWTSSKNYVPLYGKQELYDT 73

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L +  + FR+  +   I VP S +   R+ LAA+G+  ++  +G E  D V   
Sbjct: 74  ANIMEMLEKEQVPFRLEKSTGQILVPESQLAHVRMALAARGV-RAAMPAGLEGLDNVTGL 132

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRA 179
           G + FM+      ALEGE+ARTI S+  + +ARVH+ +P    F  +   +P+ASVM+  
Sbjct: 133 GTSEFMEGARYRHALEGELARTIISLDAVRSARVHLAIPKRTLFVGRDEEKPSASVMLDL 192

Query: 180 INPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK----SLSI 233
                 +    EAI +LVA ++  +  G VT++D  G+LL+A   ++   GK     +  
Sbjct: 193 QPGQAMELGQVEAIANLVAGSISGMKPGAVTIVDQAGQLLSAELGDKAGFGKQSVQQMEY 252

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293
           V+ ++  I    +  L   LG  NFR  + A++N +  +  +   DP   V    + S  
Sbjct: 253 VRKLEQYIRQRASDMLYPMLGTGNFRVQIAADVNFNAVEETQQQLDPQGVV---TKESTK 309

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSN------------YEIN 341
           + ++  +          N P  +  K   P + + T   E Q N            YE +
Sbjct: 310 SDKTIDALALGIPGALSNRPPETTPKSEQPAANQGTTSSETQKNDSRTERQEINKQYENS 369

Query: 342 TKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR 401
              + T +   +LE++++++++N+    +        G     L +I ++V  + G +  
Sbjct: 370 RTIVHTRYQQGRLEKMNVSILLNQQSAPK-------DGWSAEQLEQIRQMVERSVGFDDA 422

Query: 402 RGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461
           RGD I++   DF                         ++  L+ L          +  L 
Sbjct: 423 RGDQISLQVFDFTGAVPIAPPESGWWETPYWQDSLRYLVGGLLGLTLVFFGIRPLVKHLV 482

Query: 462 RLHNIDDAKKGEVGGKSILSPPPIS------SAVTTGLMPNDNIALDSSNQDIFS--HSR 513
           R   + D +  E   +       +S      +A+T  +M N  I  D+  +  FS  +  
Sbjct: 483 RTQQLPDEEPAEEQDEQQEPTVGLSMRRDDDAALTAPMMSNGLIRADNQMEPQFSSLNLE 542

Query: 514 NLQSRINSYVSKQSDLRLL 532
            L    +    +   L++ 
Sbjct: 543 ALPEPGSELEVQLQHLQVA 561


>gi|21672359|ref|NP_660426.1| flagellar MS-ring protein [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
 gi|25008478|sp|Q8KA45|FLIF_BUCAP RecName: Full=Flagellar M-ring protein
 gi|21622963|gb|AAM67637.1| flagellar M-ring protein [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
          Length = 556

 Score =  342 bits (877), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 116/575 (20%), Positives = 238/575 (41%), Gaps = 62/575 (10%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
            +   F        R    +L  + ++ ++  ++   +  SP Y  LY  L   D   I 
Sbjct: 15  KKFNNFLSYFFKNSR----VLIILFVLAVITTVSISMWRKSPDYQVLYNNLSNEDGEMII 70

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L++  I +++S++   + VP   V + R+H +    P    + GYE+ DK   FG++ 
Sbjct: 71  DQLNQMQIPYKLSEDSGQLLVPKDKVYELRLHFSENNSPH--RDIGYEILDKE-RFGVSQ 127

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI--NP 182
           F ++I   RALEGE+ARTI+ I+ +  A++HI  P    F +   +P+ SV++       
Sbjct: 128 FGEQINYQRALEGELARTIEKINVVKNAKIHIAFPKNSLFLEDKKKPSVSVILNLKSNQG 187

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK-SLSIVQAIQHEI 241
             +    AI HL+++++ +L + ++T++D  GKLL  + +  N +    L   + ++   
Sbjct: 188 LDHSQVNAILHLISSSICDLSIENITIIDQFGKLLNNSSLGLNQIDDLKLRYSEEVESRY 247

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD----SKVERSIRLS------ 291
              I   L   LG +N  + V A++N ++ +  +  Y P+    ++  RS + +      
Sbjct: 248 RNRIKNILEPLLGFNNVYAQVTAQINFNSHEKTQEKYTPNTNYKNQAIRSRQSTVNDKIN 307

Query: 292 --KDAQRSETSQPESAVTVEQNMPHV------------SDRKVPLPRSLENTDKKEEQSN 337
             K+  + +   P+++ +  +++                + +        +    ++  N
Sbjct: 308 NRKEENKPDELFPQTSFSSNKDLNSTTYSNKKIKKSIIQNNQDNNILHSNSAISHDDTIN 367

Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG 397
           YE+N     T  +  +++RLS AV+VN   + +  G+S         + +I  +V  A G
Sbjct: 368 YELNHSLSHTKMNIGEIKRLSAAVIVN--FVKDKNGKSV--PINVEQIKKIKNLVREAIG 423

Query: 398 INSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457
            +  RGD++ + +  F +    N  +      D    +F +             +TF   
Sbjct: 424 YSKVRGDSVYVVNESFFQ---KNKNSPIKLLKDSNQSNFYST-----------FLTFTPW 469

Query: 458 HALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS 517
                       K      K+ ++     +     L+  D  A ++ ++  FS + N   
Sbjct: 470 FISLFFLFFLVKKCFFSSSKNNINNQSYKNKTEEDLLEKDTKA-ENISELKFSKTSNTDK 528

Query: 518 RINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
            I          ++ ++   N    A I+R+W   
Sbjct: 529 LI---------HQICNISNQNPRIIASIIRQWMSD 554


>gi|37680665|ref|NP_935274.1| flagellar MS-ring protein [Vibrio vulnificus YJ016]
 gi|37199414|dbj|BAC95245.1| polar flagellar M-ring protein FliF [Vibrio vulnificus YJ016]
          Length = 581

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 110/554 (19%), Positives = 237/554 (42%), Gaps = 36/554 (6%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
               L R  +L+L+  I V +++ +   F+V  P    L V  E  ++  +   L +  I
Sbjct: 49  GDLDLLRQVVLVLSISICVALIVMLF--FWVKEPEMRPLGV-FETEELIPVLDHLDQQKI 105

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
           ++++  +G++I V +S     ++ +   GL + S+ +G ++  +   FG++  +++    
Sbjct: 106 NYKL--DGNTILVETSEFNSIKLDMVRSGL-NQSTQAGDDILLQDMGFGVSQRLEQERLK 162

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEA 190
            + E ++ + I+ +  +  A+V + +P    F +     +ASV +     S  K    ++
Sbjct: 163 LSRERQLGKAIEEMKQVRKAKVLLALPKQSVFVRHNQEASASVFLTLNTGSNLKQQEVDS 222

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNINKA 248
           I  +VA+AVP +    VTV D  G+LL +   +       K   + +  +  +   I+  
Sbjct: 223 IVDMVASAVPGMKTSRVTVTDQHGRLLNSGSQDPVSAARRKEQELERNQEQALREKIDSV 282

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------T 299
           L   LG  N+ + V  E++    +     +DP++   RS    +D              +
Sbjct: 283 LIPILGFGNYTAQVDIEMDFSAVEQTRKQFDPNTPATRSEYALEDYNNGNMVAGVPGALS 342

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           +QP +  ++ Q++  + D  V    S+    +KE   N+E++T           + R ++
Sbjct: 343 NQPPADASIPQDVAQMKDGSVLGQGSV----RKESTRNFELDTTISHERKQMGVINRQTV 398

Query: 360 AVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           AV + ++  +    G      + ++ +  I +++    G +  RGD + + SM F E + 
Sbjct: 399 AVAIKDRATINPDTGDVTYTPRSEAEINAIRQVLVGTVGFSENRGDLLNVLSMPFAEPEQ 458

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
                V +      +       +ALV +V  L++      A+++L N     + E+ G  
Sbjct: 459 EQLADVPIWEHPNFNDWIRWFASALVIIVVILVLI---RPAMKKLLNPAGDDEDEMYGPD 515

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
            L   PI +   T L+ +D   +D+     F  S +L    N +  +     +  ++   
Sbjct: 516 GL---PIGADGETSLIGSD---IDAGELFEFGSSIDLP---NLHKDEDVLKAVRALVANE 566

Query: 539 EERFAKILRKWARS 552
            E  A++++ W  +
Sbjct: 567 PELAAQVVKNWMIN 580


>gi|332994121|gb|AEF04176.1| flagellar MS-ring protein [Alteromonas sp. SN2]
          Length = 564

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 109/560 (19%), Positives = 226/560 (40%), Gaps = 28/560 (5%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +    F  +  S    R + L  V+++ + + +    +   P +  L  K+E  ++    
Sbjct: 23  ENKSGFMDTLGSADMMRQMALVVVLVICVAIAVFILIWAQEPDFRPL-AKMETQELIETL 81

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             +    I++R+   G+++ V S      R+ +  QGL + SS++G ++  +   FG++ 
Sbjct: 82  DYMDANQIEYRLE--GNTVYVRSDEFQTIRLGMTRQGL-TGSSDAGTDIIMQDMGFGVSQ 138

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
            ++      A E +IA TI+ IS I  ARV + MP    F +   + +A+V++ A    V
Sbjct: 139 RVEMERLKHAREQQIAATIEDISSIQKARVLLAMPKENVFARREKKASATVVLTAKRGKV 198

Query: 185 Y--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQAIQHE 240
              +  +++  +VA+AV N++   VTV DS G+LL +   +       K   I +  + E
Sbjct: 199 IAGEEVDSVIDIVASAVQNMEPSAVTVTDSNGRLLNSGSQDSLSARARKEYEIERQREQE 258

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I+  L   LG+ N+ +     ++    +  +  Y+PD    RS  +++    S   
Sbjct: 259 YLEKIDAILIPVLGIGNYTAQADVSMDFTALEQTQRSYNPDLPAVRSEMINEQN--SVGG 316

Query: 301 QPESAVTVEQNMPHVSDR-----KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
                     N P +        +     +L  +  K    NYE++T    T   +  + 
Sbjct: 317 GAMGIPGALTNQPPLDSNIPENPEAGAQATLPGSTSKVSTRNYELDTTISHTKKQSGVIR 376

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           RLS++V V+  ++    G ++ + +    L  I +++    G +  RGD++ + S+ F  
Sbjct: 377 RLSVSVAVDYLQVAGEDGTTSAEPRNQEALLNIRRLLQGGVGFDVTRGDSLEVVSVPFTR 436

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG-EV 474
                     +            VI  LV +V  + V       LRRL N D++K+  + 
Sbjct: 437 MDDGVIEDAPIWEQPAFLPILKLVIGGLVIIVLIIFVI---RPMLRRLINPDESKEADDF 493

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
                L     + ++ +       +   +    +       +  + +         +  +
Sbjct: 494 DADEGLDLGDETISMLSTDFDEGQVGFAADGSLMLPDLHKDEDVLKA---------VRAL 544

Query: 535 IEINEERFAKILRKWARSEI 554
           +    E  A++++ W   + 
Sbjct: 545 VANEPELSAQVVKGWLMQDE 564


>gi|27365280|ref|NP_760808.1| flagellar MS-ring protein [Vibrio vulnificus CMCP6]
 gi|320155664|ref|YP_004188043.1| flagellar M-ring protein FliF [Vibrio vulnificus MO6-24/O]
 gi|27361427|gb|AAO10335.1| flagellar M-ring protein FliF [Vibrio vulnificus CMCP6]
 gi|319930976|gb|ADV85840.1| flagellar M-ring protein FliF [Vibrio vulnificus MO6-24/O]
          Length = 581

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 110/554 (19%), Positives = 236/554 (42%), Gaps = 36/554 (6%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
               L R  +L+L+  I V +++ +   F+V  P    L V  E  ++  +   L +  I
Sbjct: 49  GDLDLLRQVVLVLSISICVALIVMLF--FWVKEPEMRPLGV-FETEELIPVLDHLDQQKI 105

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
           ++++  +G++I V +S     ++ +   GL + S+ +G ++  +   FG++  +++    
Sbjct: 106 NYKL--DGNTILVETSEFNSIKLDMVRSGL-NQSTQAGDDILLQDMGFGVSQRLEQERLK 162

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEA 190
            + E ++ + I+ +  +  A+V + +P    F +     +ASV +     S  K    ++
Sbjct: 163 LSRERQLGKAIEEMKQVRKAKVLLALPKQSVFVRHNQEASASVFLTLNTGSNLKQQEVDS 222

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNINKA 248
           I  +VA+AVP +    VTV D  G+LL +   +       K   + +  +  +   I+  
Sbjct: 223 IVDMVASAVPGMKTSRVTVTDQHGRLLNSGSQDPVSAARRKEQELERNQEQALREKIDSV 282

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------T 299
           L   LG  N+ + V  E++    +     +DP++   RS    +D              +
Sbjct: 283 LIPILGFGNYTAQVDIEMDFSAVEQTRKQFDPNTPATRSEYALEDYNNGNMVAGVPGALS 342

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           +QP +  ++ Q++  + D  V    S+    +KE   N+E++T           + R ++
Sbjct: 343 NQPPADASIPQDVAQMKDGSVLGQGSV----RKESTRNFELDTTISHERKQMGVINRQTV 398

Query: 360 AVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           AV + ++  +    G      + ++ +  I +++    G +  RGD + + SM F E + 
Sbjct: 399 AVAIKDRATINPDTGDVTYTPRSEAEINAIRQVLVGTVGFSENRGDLLNVLSMPFAEPEQ 458

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
                V +      +       +ALV +V  L++      A+++L N       E+ G  
Sbjct: 459 EQLADVPIWEHPNFNDWIRWFASALVIIVVILVLI---RPAMKKLLNPAGDDDDEMYGPD 515

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
            L   PI +   T L+ +D   +D+     F  S +L    N +  +     +  ++   
Sbjct: 516 GL---PIGADGETSLIGSD---IDAGELFEFGSSIDLP---NLHKDEDVLKAVRALVANE 566

Query: 539 EERFAKILRKWARS 552
            E  A++++ W  +
Sbjct: 567 PELAAQVVKNWMIN 580


>gi|294636866|ref|ZP_06715198.1| flagellar M-ring protein FliF [Edwardsiella tarda ATCC 23685]
 gi|291089927|gb|EFE22488.1| flagellar M-ring protein FliF [Edwardsiella tarda ATCC 23685]
          Length = 419

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 102/386 (26%), Positives = 176/386 (45%), Gaps = 37/386 (9%)

Query: 22  ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81
            + L     V I + +    +  +P Y  LY  +   D   I   LS+ NI +R ++NG+
Sbjct: 32  KIPLLLASAVAIAIVVVLALWARAPDYRVLYSNISDRDGGAIVTQLSQMNIPYRFANNGT 91

Query: 82  SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
           ++ VP+  V   R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE+AR
Sbjct: 92  TLMVPADKVYDLRLKLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELAR 149

Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAV 199
           TI+++  +V+ARVH+ +P    F +   +P+ASV +              AI ++V+++V
Sbjct: 150 TIETLGPVVSARVHLALPKPSLFVREQKQPSASVTLTLEPGRALDDGQINAIVYMVSSSV 209

Query: 200 PNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNF 258
             L  G+VTV+D  G LLT  +   R++    L     ++  ++  I   L   LG  N 
Sbjct: 210 AGLPPGNVTVVDQFGHLLTQPDGTGRDLNAAQLKFTSEVEGRLQRRIETILQPMLGSGNV 269

Query: 259 RSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMP-H 314
            + V A+L+   ++  +  Y P+    ++   S+   +S+ S             N P  
Sbjct: 270 HAQVTAQLDFANREQTDEEYKPNQLPNQAAIRSQQISQSDQSGGQLNGGVPGALSNEPAP 329

Query: 315 VSDRKVPLPRSLENTD----------------------------KKEEQSNYEINTKSIA 346
            +   +  PR+   T+                            +++E +NYE++     
Sbjct: 330 PATGNIDKPRNSTGTNGRNRNESMPSRSSTLSNNGRLASRNENIRRDETTNYEVDRTIRH 389

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVL 372
           T      +ERLS+AVVVN     +  
Sbjct: 390 TQERAGGIERLSVAVVVNYATTPQGK 415


>gi|254506888|ref|ZP_05119027.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus 16]
 gi|219550173|gb|EED27159.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus 16]
          Length = 582

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 111/554 (20%), Positives = 235/554 (42%), Gaps = 35/554 (6%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
               L R  +L+L+  I V +++ +   F+V  P    L    E  ++  +   L +  +
Sbjct: 49  GDLDLLRQVVLVLSISICVALIVMLF--FWVKEPEMRPLGA-YETEELIPVLDYLDQQKL 105

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
           D+++  +G++I VPSS     ++ +   GL +   N+G ++  +   FG++  ++     
Sbjct: 106 DYKL--DGNTILVPSSEYNTLKLDMVRAGL-NQEKNAGDDILLQDMGFGVSQRLELERLK 162

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEA 190
            + E ++++ I+ +  +  ARV + +P    F +     +ASV +     +  K    ++
Sbjct: 163 LSRERQLSKAIEEMKQVRKARVLLALPKQSVFVRHNQEASASVFLTLATGANLKQEEVDS 222

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKA 248
           +  +V++AVP +    +TV D  G+LL++   +       K   + +  +  +   I+  
Sbjct: 223 VVDMVSSAVPGMKPNRITVTDQHGRLLSSGSQDPASAARRKEHELERKQEQALRDKIDSV 282

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------T 299
           L   LG  N+ + V  +L+    +     +DP++   RS    +D              +
Sbjct: 283 LIPILGFGNYTAQVDIQLDFSAVEQTRKSFDPNTPSTRSEYTLEDYNNGSVVAGVPGALS 342

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           +QP +  ++ Q++  + D       S+     KE   NYE++T           + R ++
Sbjct: 343 NQPPADASIPQDVAQMKDGTGLGQGSV----HKEATRNYELDTTISHERRQTGVVNRQTV 398

Query: 360 AVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           AV + N+  +    G +  Q   D+ L+ I +++  A G +  RGD + + SM F E ++
Sbjct: 399 AVAIKNRAIVNPDTGETTYQPLSDADLSSIRQVLIGAVGYSEARGDLLNVLSMQFAEPEV 458

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
                V +      +       +ALV +V  L++      A+++L N   A   +     
Sbjct: 459 EVLQDVPIWEHPNFNDWVRWFASALVIIVVVLVLV---RPAMKKLLNP--ASDDDDDQLY 513

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
                PI +   T L+ +D   L+      F  S +L    N +  +     +  ++   
Sbjct: 514 GPDGLPIGADGETSLIGSD---LEGGELFEFGSSIDLP---NLHKDEDVLKAVRALVANE 567

Query: 539 EERFAKILRKWARS 552
            E  A++++ W + 
Sbjct: 568 PELAAQVVKNWMQD 581


>gi|126176167|ref|YP_001052316.1| flagellar MS-ring protein [Shewanella baltica OS155]
 gi|304412519|ref|ZP_07394125.1| flagellar M-ring protein FliF [Shewanella baltica OS183]
 gi|307307178|ref|ZP_07586916.1| flagellar M-ring protein FliF [Shewanella baltica BA175]
 gi|125999372|gb|ABN63447.1| flagellar M-ring protein FliF [Shewanella baltica OS155]
 gi|304349161|gb|EFM13573.1| flagellar M-ring protein FliF [Shewanella baltica OS183]
 gi|306910417|gb|EFN40848.1| flagellar M-ring protein FliF [Shewanella baltica BA175]
          Length = 558

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 122/526 (23%), Positives = 211/526 (40%), Gaps = 32/526 (6%)

Query: 36  FMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARI 95
            +    +  +  Y  LY   E  D +++   L    ID+R+  N  ++ V    VG AR+
Sbjct: 52  VIVLMLWTATAGYRPLYGSQENVDTSQVLNVLDAEGIDYRLDANSGAVLVAEEQVGNARM 111

Query: 96  HLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVH 155
            LAA+G+  +   SG E  D   + G + FM++     +LEGE+ARTI S+  + AARVH
Sbjct: 112 ILAAKGV-KAKVPSGMEALDNT-ALGTSQFMEQAKYRNSLEGELARTIMSLKLVRAARVH 169

Query: 156 IVMPDMGSFRKIGAR-PTASVMIR--AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDS 212
           + +P    F +     PTASVM++            EAI +LVA +V  L   ++ V+D 
Sbjct: 170 LAIPKQTLFIRQEPELPTASVMLQLDPNTRLSESQVEAIVNLVAGSVTGLTASNIKVVDQ 229

Query: 213 TGKLLTANEMERNILG----KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM 268
            G+ L+ N      L     K L   + +++ +  N +  L   LG +NF+  V A++N 
Sbjct: 230 DGRYLSENISGNQDLSQSRNKQLQYTRELENSLVANASSMLEPVLGQENFQVRVTAKVNF 289

Query: 269 DTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
           +  +  +   DP + V    +       S  S          N P  + +     ++   
Sbjct: 290 NQVEETKESLDPQNVV---TQERTSVDDSSNSIAAGIPGALSNKPPQAGKAAADDKTR-- 344

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
             K+EE   Y++        +   +LE LS++V++N                 ++ LA+ 
Sbjct: 345 NLKQEESRQYDVGRSVRHVRYQQMQLENLSVSVLINSATSQGAFND-------EAQLAKF 397

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
             +V  A G ++ RGD+ TI + +F         TV   F              L +++G
Sbjct: 398 GNMVKDAIGFSAARGDSFTINAFEFT-------PTVTAEFTPSPWWQSENYQAYLRYIIG 450

Query: 449 TLLVTFLGLHALRRLHN--IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQ 506
            +L   L L  LR L       A+      + +      + A+   +    +        
Sbjct: 451 GILGFGLILFVLRPLVKHLTRTAQMTAPRIEPVALSAAPAGALDGPVADAASNQPHQLPS 510

Query: 507 DIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
             +  S+ L    +    K   L L  +      R A+++  W   
Sbjct: 511 AEWLGSQGLPEPGSPLTVKMEHLAL--LANKEPARVAEVIAHWIGD 554


>gi|255985845|ref|YP_354394.3| flagellar MS-ring protein [Rhodobacter sphaeroides 2.4.1]
 gi|77389308|gb|ABA80493.1| putative flagellar M-ring protein [Rhodobacter sphaeroides 2.4.1]
          Length = 509

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 127/531 (23%), Positives = 224/531 (42%), Gaps = 25/531 (4%)

Query: 26  ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISV 85
               +   +  +        P    LY  L+      +  AL      + +   G S+ V
Sbjct: 1   MGATVAMFLAVLGLSQLAGRPPMALLYAGLQGPAAGEVVTALEAQGAAYEVR--GDSVYV 58

Query: 86  PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145
            ++   + R+ LA +GLP++ + +GYEL D ++ FG TS M +   +RA EGE+ARTI +
Sbjct: 59  EAARRDEIRMKLAGEGLPATGA-AGYELLDGLSGFGTTSQMFDAAYLRAKEGELARTILA 117

Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS-VYKSAEAIRHLVAAAVPNLDM 204
              + AARVHI  P    FR+   RPTASV +     +     A A +HLVA+AV  L  
Sbjct: 118 SPQVKAARVHIAQPAAQPFRRE-QRPTASVTVTTSGGAVTADQARAFKHLVASAVAGLQP 176

Query: 205 GDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVA 264
            DV+V+DS   L+ + + +        S       E+  N+ + L A +G       V  
Sbjct: 177 EDVSVIDSVMGLIRSGDEKDGATAAGESRA----AELRSNVERLLEARVGPGRAVVEVSV 232

Query: 265 ELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPR 324
           ++    + I E  +DP  +V  S    + +  S +++P   VTV  N+P    +     +
Sbjct: 233 DVETARESIVEKSFDPKGRVPISSETQEKS--SNSTEPSPDVTVASNLPEGDAKGGTGGK 290

Query: 325 SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY 384
           S  +T +  E  N+E++            + RL++AV+V+  +     G    + + +  
Sbjct: 291 S--STSETREMVNFEVSQTQRELMRQPGAIRRLTVAVLVDGIKTVADDGTVGWEPRPEEE 348

Query: 385 LAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALV 444
           LA + ++V +A G++  RGD +T+ S+ F E         +  F+  L      +++ + 
Sbjct: 349 LAVLRELVGSAVGLDESRGDRLTLRSLAF-ETPPEAGTLAETGFLSRLGAF--DLMSLIQ 405

Query: 445 FLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSS 504
             V  L+   LGL  +R +              ++        A+T  +           
Sbjct: 406 IGVLALVALILGLFVVRPVLTAPPRPPAAPQPLALPGYEGGEPALTGEI---------DD 456

Query: 505 NQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + D+        + ++         RL  +IE  +    +ILR W   + E
Sbjct: 457 SGDLPDFPMVSSAPLDLDEEADPVARLRRLIEERQAESVEILRGWMEPQRE 507


>gi|127512297|ref|YP_001093494.1| flagellar MS-ring protein [Shewanella loihica PV-4]
 gi|126637592|gb|ABO23235.1| flagellar M-ring protein FliF [Shewanella loihica PV-4]
          Length = 565

 Score =  340 bits (872), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 104/531 (19%), Positives = 221/531 (41%), Gaps = 30/531 (5%)

Query: 37  MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIH 96
           +    +   P Y  L  K++  ++ ++   L +  ++++I  +   + VP       ++ 
Sbjct: 52  VFVMLWAQEPEYRPL-GKMDTQEMVQVLDVLDKNKVNYQIDVD--VLKVPEDQYQDVKMM 108

Query: 97  LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHI 156
           L+  G+ +S S   Y    K + FG++  M+      + E  +ARTI+ +  +  A+V +
Sbjct: 109 LSRAGIDNSPSRDDY--LSKDSGFGVSQRMEAARLKNSQEQNLARTIEELKSVSRAKVIL 166

Query: 157 VMPDMGSFRKIGARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
            +P    F +  ++P+A+V++      +  +  ++I  +VA+AV  L+   VTV D+ G+
Sbjct: 167 AIPKENVFARNRSKPSATVVVNTRRGGLGQEEVDSIVDIVASAVHGLEPTRVTVTDANGR 226

Query: 216 LLTANEM--ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI 273
           LL +           + L +VQ  + E    I   L   LG +NF + V   ++  + + 
Sbjct: 227 LLNSGSQTAGSARARRELELVQQKEAEYRSKIESILMPILGPENFTAQVDVNMDFTSVEQ 286

Query: 274 REIVYDPDSKVERSIRLSKDAQRSETSQP-----ESAVTVEQNMPHVSDRKVPLPRSLEN 328
               Y+PD    RS    ++     ++        +   +E N+P  +       ++L  
Sbjct: 287 TAKRYNPDLPAVRSEMTVENNSTGASTGGIAGALSNQPPMEANIPQQATGTSAQEQTLPG 346

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTE-VLGRSADQGKIDSYLAE 387
           +  KE   NYE++T    T      + R+S++V V+         G+     + +  L+ 
Sbjct: 347 SSHKEATRNYELDTTISHTRQQVGVVRRVSVSVAVDFKTGPAGEDGQVTRVARTEQELSN 406

Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447
           I +++  A G N++RGD I + ++ F++  +  +  + +       R    V+  L+ LV
Sbjct: 407 IRRLLEGAVGFNTQRGDMIEVVTVPFMDQLVEEAPALAIYEEPWFWRAIKLVMGGLIILV 466

Query: 448 GTLLVTFLGLHALRRLHNIDDAKKGEVG--GKSILSPPPISSAVTTGLM--PNDNIALDS 503
              L+ F+    L+RL   D  K  +    G  +       +A T G++  P+   +   
Sbjct: 467 ---LILFVVRPMLKRLIYPDGQKMPDAPSLGDELAEIEDQYAADTLGMLNRPDAEYSYAD 523

Query: 504 SNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
               +          I +         +  ++    E   ++++ W +   
Sbjct: 524 DGSILIPDLHKDDDMIKA---------IRALVANEPELSTQVVKGWLQENE 565


>gi|269961618|ref|ZP_06175980.1| flagellar M-ring protein [Vibrio harveyi 1DA3]
 gi|269833659|gb|EEZ87756.1| flagellar M-ring protein [Vibrio harveyi 1DA3]
          Length = 580

 Score =  340 bits (871), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 99/554 (17%), Positives = 228/554 (41%), Gaps = 36/554 (6%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
               L R  +L+L+  I V +++ +   F+V  P    L    E  ++  +   L +  I
Sbjct: 47  GDLDLLRQVVLVLSISICVALIVMLF--FWVKEPEMRPLGA-YETEELIPVLDYLDQQKI 103

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
           ++++  +G++ISV SS     ++ +   G+ + ++ +G ++  +   FG++  +++    
Sbjct: 104 NYKL--DGNTISVESSDYNSIKLGMVRAGV-NQATAAGDDILLQDMGFGVSQRLEQERLK 160

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEA 190
            + E ++A+ I+ +  +  ARV + +P    F +     +ASV +     +  K    ++
Sbjct: 161 LSRERQLAQAIEEMKQVRKARVLLALPKHSVFVRHNQEASASVFLTLSTGANLKQQEVDS 220

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKA 248
           I  +VA+AVP +    +TV D  G+LL++   +       K   + ++ +  +   I+  
Sbjct: 221 IVDMVASAVPGMKTSRITVTDQHGRLLSSGSQDPASAARRKEQELERSQEQALREKIDSV 280

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------T 299
           L   LG  N+ + V  +++  T +     +DP++   RS    +D              +
Sbjct: 281 LLPILGFGNYTAQVDIQMDFSTVEQTRKNFDPNTPATRSEYALEDYNNGNMVAGIPGALS 340

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           +QP +  ++ Q++  + D  +    S+    +KE   N+E++T           L R ++
Sbjct: 341 NQPPADASIPQDVAQMKDGSLTGQGSV----RKESTRNFELDTTISHERKQTGTLARQTV 396

Query: 360 AVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           +V + ++  +    G        +S +  I +++    G +  RGD + + S+ F E +L
Sbjct: 397 SVAIKDRRTVNPDTGEVTYTPLSESEINAIRQVLIGTVGFDQNRGDLLNVLSVKFAEPEL 456

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
                  +      +       +ALV +V  L++      A+++L N     + E+ G  
Sbjct: 457 EQMVDPPIWEHPNFNDWVRWFASALVIIVVILVLV---RPAMKKLLNPASTDEDEMYGPD 513

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
            L           G         +  +     +    +  + +         +  ++   
Sbjct: 514 GLPIGADGETSLIGSDIESGELFEFGSSIDLPNLHKDEDVLKA---------VRALVANE 564

Query: 539 EERFAKILRKWARS 552
            E  A++++ W   
Sbjct: 565 PELAAQVVKNWMNE 578


>gi|163738046|ref|ZP_02145462.1| flagellar M-ring protein FliF [Phaeobacter gallaeciensis BS107]
 gi|161388662|gb|EDQ13015.1| flagellar M-ring protein FliF [Phaeobacter gallaeciensis BS107]
          Length = 561

 Score =  340 bits (871), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 151/581 (25%), Positives = 247/581 (42%), Gaps = 48/581 (8%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           + Q+   +     L   + LI     ++ I+  +A     N+P    LY  LE      +
Sbjct: 1   MQQIKNVWAG---LDTRKRLIAVGATVIVILSVLAMSRVANTPTMQLLYAGLESGSAGDV 57

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
             AL +   ++ +   G SI VP++   + R+ LA++GLP++    GYEL D ++ FG T
Sbjct: 58  VRALEQRGTEYEVR--GGSIYVPATARDELRMTLASEGLPANGGR-GYELLDSLSGFGTT 114

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN-P 182
           S M +    RA EGE+ARTI +   +  ARVHI       F++  A PTASV +  +  P
Sbjct: 115 SQMFDAAYWRAKEGELARTIVASPHVTQARVHIANTGSNPFQRT-AEPTASVSVVPMGSP 173

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242
                A AIR L+++AV  L + +V V+D+ G L+ + E    +   +    Q+    I 
Sbjct: 174 ITPAQANAIRFLISSAVTGLAVENVAVIDANGALIGSPEAAAAVGAGTDDRSQS----IR 229

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
             + + + A +G  N    V  E   DT+ IRE   DP+S+V  S  + + A  S+    
Sbjct: 230 ERVMRLVEARVGHGNAVVEVSVETVTDTESIREKRIDPESRVAISTDVEERADSSQN--Q 287

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
              VTV  N+P           S  +T    E+ NYEI+            ++RL++AV+
Sbjct: 288 SGEVTVASNIPD--GDAASGDGSKASTSATRERVNYEISETEKEILRGPGAIKRLTVAVL 345

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           +N   +T   G +  + + +  L  + +++SAA G +  RGD IT+ SM+ +        
Sbjct: 346 LNGVPITTATGETVMEPRSEEELGALRELISAAVGFSEERGDVITLKSME-MPTVEPQGT 404

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482
            V  S  D +     ++I      + TL    LGL  +R + + + A    +G     + 
Sbjct: 405 VVSASIFDNIYLDAMSLIQMAALALVTL---ILGLFVIRPILS-NQASVPALGAPGGDAM 460

Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ-------------------------- 516
             + +    G M N N+  D +      ++   Q                          
Sbjct: 461 DELPALGGGGFMANPNLGADLALDGEIENNETGQFEPMGGMGMGTGMGMGDMGGMGDMGG 520

Query: 517 SRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIEDR 557
                        RL  MI   +E   +ILR W   E E+R
Sbjct: 521 LPALGGGGDNPVDRLRSMIGERQEETVQILRGWL-EENEER 560


>gi|262276395|ref|ZP_06054204.1| flagellar M-ring protein FliF [Grimontia hollisae CIP 101886]
 gi|262220203|gb|EEY71519.1| flagellar M-ring protein FliF [Grimontia hollisae CIP 101886]
          Length = 586

 Score =  340 bits (871), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 106/566 (18%), Positives = 229/566 (40%), Gaps = 29/566 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           ++++ +        +   R LIL + + + I L +    +V  P    L    E  ++  
Sbjct: 34  MMERDVTPTGPLGGMDIARQLILVAAVAICISLVVLLFMWVQEPEMRPLGT-YETEELIP 92

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +   L +  ID+ +  +G++I VP+      +++L+  GL +S++  G ++  +   FG+
Sbjct: 93  VLDHLDQQKIDYTL--DGNTIRVPAKDYSSIKLNLSRAGL-NSATEEGDDILMQDMGFGV 149

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           +  ++      + E ++A  I+ I  +  ARV + MP    F +     +A+V +     
Sbjct: 150 SQQLERERLKLSRERQLAAAIEKIRAVSKARVLLAMPKQSVFVRHNQEASATVFLTVRGT 209

Query: 183 SVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQ 238
           +       ++I  +VA+AVP+L    VTV D  G+LL++   +   +   K   + +  +
Sbjct: 210 TQLGQEEVDSIVDMVASAVPSLKPSRVTVTDQHGRLLSSGSQDPIASQRRKEYELERKQE 269

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
             +   I+  L   LG+ N+ S V   ++    +     +DP +   RS    ++   + 
Sbjct: 270 QALREKIDAILIPVLGLGNYTSQVDVTMDFSAVEETRKRFDPATPSTRSEYTREN--YNN 327

Query: 299 TSQPESAVTVEQNMPHVSDRKV-------PLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           T           N P V                  + +  +E   NYE++T         
Sbjct: 328 TDYVAGVPGALSNQPPVDSSIPEDIQDLRNGGAGDKGSLSREATRNYELDTTISHRRGQT 387

Query: 352 YKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
             + R +++V V+    T    G        D+ L +I +++    G    RGD + + +
Sbjct: 388 GTIARQTVSVAVDYIASTNPETGEITRTPVSDAELEKIRRLLVGGVGYTENRGDILEVLA 447

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           + F+E ++ + G V +   +  +     +  +LV +V  L++      A+ +L N     
Sbjct: 448 VPFVEPEVVSLGDVPIWEHENFNDWVRWLAASLVIIVVVLVLI---RPAMSKLINPTKDD 504

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV---SKQS 527
              +G    +  P         L P+D+I L  ++ D  +      S +N       +  
Sbjct: 505 DALLGPNGEMLGPD-----GLPLSPDDDIGLIGADLDGSNTFGMSSSNLNLPDLHKDEDL 559

Query: 528 DLRLLHMIEINEERFAKILRKWARSE 553
              +  ++    +  A++++ W  ++
Sbjct: 560 LKAVRALVANEPDLAAQVVKSWVSND 585


>gi|117928049|ref|YP_872600.1| flagellar M-ring protein FliF [Acidothermus cellulolyticus 11B]
 gi|117648512|gb|ABK52614.1| flagellar M-ring protein FliF [Acidothermus cellulolyticus 11B]
          Length = 533

 Score =  339 bits (870), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 129/557 (23%), Positives = 233/557 (41%), Gaps = 38/557 (6%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           AILD++   F   T+  +   ++ A ++L  ++  +  R +   P Y  L+  L  SD  
Sbjct: 5   AILDRIRAVFGEFTAGQK---MVTALIVLALVIGAVLFRSWAAKPSYAPLFSNLAASDAA 61

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I+  L+     +R++D GS+I VP   V + R+ +A   LP +SS SG+ L DK     
Sbjct: 62  AITDKLNSLKEPYRLADGGSTILVPQKDVYQLRLDMAKANLP-ASSQSGFSLLDK-GGIT 119

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
            + F Q +   +ALE E+A+TI++I+G+ +A V+IV+P    F +  ++PTASV++    
Sbjct: 120 TSEFQQNVAYQQALESELAKTIEAINGVQSAIVNIVLPQTDVFTQDSSKPTASVLVTTQP 179

Query: 182 PSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK---SLSIVQA 236
            S    +  +AI HLVA++V  L+  DVTV DS G +L+A  M+  +            A
Sbjct: 180 SSTLTPEQVQAIVHLVASSVEGLNPADVTVADSQGHVLSAPGMDGQLSAASTLQDQQTAA 239

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD-AQ 295
            +  +   +   L   +G  +    V A LN DT+      Y   S     I LS+  + 
Sbjct: 240 YEQRVAQAVQNLLQPLVGPGHVVVQVNAALNFDTKSTTSETYLQPSPGTTPIPLSQSWSY 299

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
            + +   ++A  +            P P + ++        +  I             +E
Sbjct: 300 ETYSGTNQAATGILGPDNIAVPTPSPSPGTYQSQS---ATVDNAIGRVVEEVKTAPGSVE 356

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           RLS+AV+++      V             L ++  +V++A G+ + RGD++++ +M F  
Sbjct: 357 RLSVAVLLDSAAAKNVN------------LTDVKNLVTSAAGVQTSRGDSVSVATMPFDT 404

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
           +Q         +     S     ++      V  L+V  +    LRR     +       
Sbjct: 405 SQQAAEKKALAAAQKAQS--MNKLVGYAKDAVIALIVLGIIFFFLRRAKKAAEVSPILSL 462

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
            + +        A   G         D + +      +    R+       ++  +  ++
Sbjct: 463 AERVELEEARRRAALGG--------GDGAERKEIPSGQKPADRLEITTPLAAE--IGELV 512

Query: 536 EINEERFAKILRKWARS 552
           E   E  A++LR W   
Sbjct: 513 ERQPEEVAQLLRGWLAD 529


>gi|222824351|ref|YP_002575925.1| flagellar MS-ring protein FliF [Campylobacter lari RM2100]
 gi|222539572|gb|ACM64673.1| flagellar MS-ring protein FliF [Campylobacter lari RM2100]
          Length = 561

 Score =  339 bits (870), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 132/566 (23%), Positives = 233/566 (41%), Gaps = 29/566 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPI-----MLFMAARFFVNSPHYDNLYVKLEV 57
           IL Q+ Q +++ +   R RI+I AS+++V        LF +     +   Y  L+     
Sbjct: 6   ILHQVGQLYQNLS--LRQRIIIAASIVVVVGFLVFLTLFRSGSTVASEAGYSVLFENANT 63

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
           SD   I   L ++ + + + + G +I VP+  V K R+ +A+ GL    +  G+ELFDK 
Sbjct: 64  SDSAMIVTQLEKSGVPYILRNEG-TILVPNDQVYKQRLAIASAGLLPKDNKVGFELFDKQ 122

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
             FG T   Q++   RALEGE+ARTI+S+  I +A VHI       F +    PTASV +
Sbjct: 123 E-FGATEAEQKVKYQRALEGELARTIESLEPIHSATVHIAFAKDTLFTQQQVPPTASVAL 181

Query: 178 RAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIV 234
                     K    I++L+A++V  L   +V ++D  G  L      E +++   +   
Sbjct: 182 TIKEGLKLNKKQIMGIKNLIASSVTKLTPENVKIMDQKGIPLDDEGAFESDLIAAQIKYK 241

Query: 235 QAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293
           +  ++E+E  I  ++A F  G D   + V  + +   ++ +  VYDP++ V     L + 
Sbjct: 242 RDQEYELEQKIVASIALFAGGYDRVVAKVSIDYDFSKEESQSEVYDPNTVVRSEQTLEEH 301

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
            +  +  + +       N+  V        R  E   K +  +N EI+ K   TT     
Sbjct: 302 KEGYKDKEIQGVPGAVSNIGPVEGLDDKGAR--EVYTKNQTTTNNEISKKITNTTKQFAT 359

Query: 354 LERLSIAVVVNKGR--LTEVLGRSADQ--GKIDSYLAEINKIVSAATGINSRRGDTITIT 409
           ++R+S AVVV+     +T+  G   ++     D  +  I  +   A G N  RGD + + 
Sbjct: 360 IKRISAAVVVDGKYKVITDDQGNITNEYMPLSDKEIQAIENLTKGAIGFNLARGDAVEVN 419

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
           +++F          V+       SR     I  + ++   +L+       +        A
Sbjct: 420 NLEFHRTA-----KVENKVQTFYSRFVEPFIPPVKYVFAAILLFIFYKKVIVPFSQKMLA 474

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
                          I  A     +   N A     + +       +  +   V  +   
Sbjct: 475 DIKLEEEMEGKDGQIIDEAED--AIEKFNAARRKVEEQLGFGDNFDEDALQYDVLLE--- 529

Query: 530 RLLHMIEINEERFAKILRKWARSEIE 555
           +L  +     E  A +L+K   +E E
Sbjct: 530 KLRAVANEKGEEVALLLQKLVENEAE 555


>gi|153834153|ref|ZP_01986820.1| flagellar M-ring protein FliF [Vibrio harveyi HY01]
 gi|148869523|gb|EDL68521.1| flagellar M-ring protein FliF [Vibrio harveyi HY01]
          Length = 580

 Score =  339 bits (870), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 99/554 (17%), Positives = 228/554 (41%), Gaps = 36/554 (6%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
               L R  +L+L+  I V +++ +   F+V  P    L    E  ++  +   L +  I
Sbjct: 47  GDLDLLRQVVLVLSISICVALIVMLF--FWVKEPEMRPLGA-YETEELIPVLDYLDQQKI 103

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
           ++++  +G++ISV SS     ++ +   G+ + ++ +G ++  +   FG++  +++    
Sbjct: 104 NYKL--DGNTISVESSDYNSIKLGMVRAGV-NQATAAGDDILLQDMGFGVSQRLEQERLK 160

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEA 190
            + E ++A+ I+ +  +  ARV + +P    F +     +ASV +     +  K    ++
Sbjct: 161 LSRERQLAQAIEEMKQVRKARVLLALPKHSVFVRHNQEASASVFLTLSTGANLKQQEVDS 220

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKA 248
           I  +VA+AVP +    +TV D  G+LL++   +       K   + ++ +  +   I+  
Sbjct: 221 IVDMVASAVPGMKTSRITVTDQHGRLLSSGSQDPASAARRKEQELERSQEQALREKIDSV 280

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------T 299
           L   LG  N+ + V  +++  T +     +DP++   RS    +D              +
Sbjct: 281 LLPILGFGNYTAQVDIQMDFSTVEQTRKNFDPNTPSTRSEYALEDYNNGNMVAGIPGALS 340

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           +QP +  ++ Q++  + D  +    S+    +KE   N+E++T           L R ++
Sbjct: 341 NQPPADASIPQDVAQMKDGTLTGQGSV----RKESTRNFELDTTISHERKQTGTLARQTV 396

Query: 360 AVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           +V + ++  +    G        +S +  I +++    G +  RGD + + S+ F E +L
Sbjct: 397 SVAIKDRRTVNPDTGEVTYTPLSESEINAIRQVLIGTVGFDENRGDLLNVLSVKFAEPEL 456

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
                  +      +       +ALV +V  L++      A+++L N     + E+ G  
Sbjct: 457 EQMVDPPIWEHPNFNDWVRWFASALVIIVVILVLV---RPAMKKLLNPASGDEDEMYGPD 513

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
            L           G         +  +     +    +  + +         +  ++   
Sbjct: 514 GLPIGADGETSLIGSDIESGELFEFGSSIDLPNLHKDEDVLKA---------VRALVANE 564

Query: 539 EERFAKILRKWARS 552
            E  A++++ W   
Sbjct: 565 PELAAQVVKNWMNE 578


>gi|308048752|ref|YP_003912318.1| flagellar M-ring protein FliF [Ferrimonas balearica DSM 9799]
 gi|307630942|gb|ADN75244.1| flagellar M-ring protein FliF [Ferrimonas balearica DSM 9799]
          Length = 583

 Score =  339 bits (869), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 95/554 (17%), Positives = 212/554 (38%), Gaps = 25/554 (4%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
             S  ++   R + L   + + + + +    +   P Y  L  ++E  ++      L + 
Sbjct: 43  LSSFGNIDVLRQISLILALAISLAIAVFLIIWAQEPSYRPL-GQMETQELIDTLDFLDQQ 101

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
            + +++  NG++ISVP       R+ L   GL  +      +   + + FG++  M++  
Sbjct: 102 KLPYQL--NGNTISVPEDRFADIRLMLTRNGLGPARPQQ--DFLTQDSGFGVSQRMEQAR 157

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--A 188
              + E  +A  ++ +  +  ARV + +P    F +    P+A+V++     +  +    
Sbjct: 158 LKHSQEQTLASAVEELRSVQRARVILALPQQNVFARQQREPSATVVVTLNRGTELRQSEV 217

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNIN 246
           +A+  +VA+AV  L    VTV D  G+LL +   +       + L +    +      I+
Sbjct: 218 DAVVDIVASAVHGLKPARVTVTDQHGRLLNSGSQDGISAQARRELELRIQQEQLYREKID 277

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306
             L   LG+  + + V   ++    +     Y+PD    RS  L +D Q    S P    
Sbjct: 278 SILIPVLGIGRYSAQVDVTMDFSAVEETSRRYNPDMPAVRSEMLIEDNQSG--SGPVGIP 335

Query: 307 TVEQNMPHVSD-------RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
               N P ++              R     ++ E   N+E+++    T      + R+++
Sbjct: 336 GALTNQPPIASEIPQQVEGAGQDERLASGRNRSEVTRNFELDSTISHTRQQVGTVRRVTL 395

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           +V V+   +    G +      ++ LA I +++  + G N+ RGD + + S+ F ++   
Sbjct: 396 SVAVDHKPVAGADGATTMAPLSETELASIRRLLMGSVGFNAARGDVLEVVSVPFADDLAL 455

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
               + +       R    V  +L  L   +L   +    ++RL N ++ K  E      
Sbjct: 456 EPLNIPIYEQGWFWR---AVKWSLGALGLLVLFLVVVRPMVKRLLNPNEGKATEGA---- 508

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
             P    + +      +    L++ + D            + +        +  ++    
Sbjct: 509 TGPGGDLAELEDQYAADTLGLLNTGDSDYSYAEDGSILLPDLHKDDDMLRAIRALVANEP 568

Query: 540 ERFAKILRKWARSE 553
           +   ++++ W   +
Sbjct: 569 DLSTQVIKSWLNED 582


>gi|156975431|ref|YP_001446338.1| flagellar MS-ring protein [Vibrio harveyi ATCC BAA-1116]
 gi|156527025|gb|ABU72111.1| hypothetical protein VIBHAR_03162 [Vibrio harveyi ATCC BAA-1116]
          Length = 580

 Score =  338 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 99/554 (17%), Positives = 228/554 (41%), Gaps = 36/554 (6%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
               L R  +L+L+  I V +++ +   F+V  P    L    E  ++  +   L +  I
Sbjct: 47  GDLDLLRQVVLVLSISICVALIVMLF--FWVKEPEMRPLGA-YETEELIPVLDYLDQQKI 103

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
           ++++  +G++ISV SS     ++ +   G+ + ++ +G ++  +   FG++  +++    
Sbjct: 104 NYKL--DGNTISVESSDYNSIKLGMVRAGV-NQATAAGDDILLQDMGFGVSQRLEQERLK 160

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEA 190
            + E ++A+ I+ +  +  ARV + +P    F +     +ASV +     +  K    ++
Sbjct: 161 LSRERQLAQAIEEMKQVRKARVLLALPKHSVFVRHNQEASASVFLTLSTGANLKQQEVDS 220

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKA 248
           I  +VA+AVP +    +TV D  G+LL++   +       K   + ++ +  +   I+  
Sbjct: 221 IVDMVASAVPGMKTSRITVTDQHGRLLSSGSQDPASAARRKEQELERSQEQALREKIDSV 280

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------T 299
           L   LG  N+ + V  +++  T +     +DP++   RS    +D              +
Sbjct: 281 LLPILGFGNYTAQVDIQMDFSTVEQTRKNFDPNTPSTRSEYALEDYNNGNMVAGIPGALS 340

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           +QP +  ++ Q++  + D  +    S+    +KE   N+E++T           L R ++
Sbjct: 341 NQPPADASIPQDVAQMKDGTLTGQGSV----RKESTRNFELDTTISHERKQTGTLARQTV 396

Query: 360 AVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           +V + ++  +    G        +S +  I +++    G +  RGD + + S+ F E +L
Sbjct: 397 SVAIKDRRTVNPDTGEVTYTPLSESEINAIRQVLIGTVGFDENRGDLLNVLSVKFAEPEL 456

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
                  +      +       +ALV +V  L++      A+++L N     + E+ G  
Sbjct: 457 EQMVDPPIWEHPNFNDWVRWFASALVIIVVILVLV---RPAMKKLLNPASGDEDEMYGPD 513

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
            L           G         +  +     +    +  + +         +  ++   
Sbjct: 514 GLPIGADGETSLIGSDIESGELFEFGSSIDLPNLHKDEDVLKA---------VRALVANE 564

Query: 539 EERFAKILRKWARS 552
            E  A++++ W   
Sbjct: 565 PELAAQVVKNWMDE 578


>gi|315126013|ref|YP_004068016.1| flagellar MS-ring protein FliF [Pseudoalteromonas sp. SM9913]
 gi|315014527|gb|ADT67865.1| flagellar MS-ring protein FliF [Pseudoalteromonas sp. SM9913]
          Length = 575

 Score =  338 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 130/562 (23%), Positives = 241/562 (42%), Gaps = 44/562 (7%)

Query: 21  RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80
           R +   +++   +   +    + ++ +Y  LY   E  D   I   L +  I FRI  + 
Sbjct: 35  RSVATIALLATLVAATIVLILWTSAKNYVPLYGNQESYDKANILEILDKEQITFRIDTDS 94

Query: 81  SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140
            +I VP   +  ARI LAA+G+  +S   G E      S G + F++ +    ALEGE+A
Sbjct: 95  GNILVPQEKLADARITLAARGI-KASMPEGIENISDKVSMGTSQFIESMQYQHALEGELA 153

Query: 141 RTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRAINPSVYK--SAEAIRHLVAA 197
           RTI ++ GI  ARVH+ +P    F  +   +  ASVM+        K    EAI  L+  
Sbjct: 154 RTIINMQGIRNARVHLAVPKRSLFVGRTEQKTAASVMVDLAPGHELKPEQVEAIIALIIG 213

Query: 198 AVPNLDMGDVTVLDSTGKLLTANEMERNILGKS----LSIVQAIQHEIEMNINKALAAFL 253
           +VP LD   V+V+D  GKLL+ +  +   +GK     L+ ++ ++  IE   +  L   L
Sbjct: 214 SVPGLDSRSVSVVDQRGKLLSGDLFDTTPVGKETDKKLAFIEKVERNIEQRASIMLLPIL 273

Query: 254 GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQ--- 310
           G  NFR  V ++++    +    + DP +       L+++  +S+++  + A  +     
Sbjct: 274 GEGNFRIQVSSDVDFSVVEETREMVDPQNV------LTQEFIKSDSTLDQLAAGIPGSLA 327

Query: 311 NMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTE 370
           N P V + +     +   + + E +  +E       T  +  +++ +S++V++N+     
Sbjct: 328 NEPPVPNEQAEDENNERTSQRSESKRQFENGRSVTHTQFEVGRIKNMSLSVLINEQVAGT 387

Query: 371 VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMD 430
             G        +  LA + ++V  ATG N  RGD   ITS  F+E ++   G     +  
Sbjct: 388 ADG------WSEEKLASLGEMVKKATGFNDARGDQFNITSFAFVEQKILAPGEGLEWW-- 439

Query: 431 ILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP----PPIS 486
                   +     ++VGTL+   L L  +R L N     K      ++ +       +S
Sbjct: 440 ----QMPELKEYARYIVGTLISLLLILFGVRPLVNHLIKGKSNDANNAMATTDNEVKSVS 495

Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR-------INSYVSKQSDLRLLHMIEINE 539
           +        ++ I   S  +++ +     + +        N +  + + ++L  +     
Sbjct: 496 ATERQSSPLDEAINAKSQIENLTAKEGASEHQNMSLPQIGNDFEEQIAHMQL--LANKET 553

Query: 540 ERFAKILRKWARS--EIEDRYT 559
           ER   +++ W     EIE R  
Sbjct: 554 ERVTSVIKYWVEQGVEIESRKA 575


>gi|163742558|ref|ZP_02149944.1| flagellar M-ring protein FliF [Phaeobacter gallaeciensis 2.10]
 gi|161384143|gb|EDQ08526.1| flagellar M-ring protein FliF [Phaeobacter gallaeciensis 2.10]
          Length = 574

 Score =  338 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 151/581 (25%), Positives = 247/581 (42%), Gaps = 48/581 (8%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           + Q+   +     L   + LI     ++ I+  +A     N+P    LY  LE      +
Sbjct: 14  VQQIKNVWAG---LDTRKRLIAVGATVIVILSVLAMSRVANTPTMQLLYAGLESGSAGDV 70

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
             AL +   ++ +   G SI VP++   + R+ LA++GLP++    GYEL D ++ FG T
Sbjct: 71  VRALEQRGTEYEVR--GGSIYVPATARDELRMTLASEGLPANGGR-GYELLDSLSGFGTT 127

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN-P 182
           S M +    RA EGE+ARTI +   +  ARVHI       F++  A PTASV +  +  P
Sbjct: 128 SQMFDAAYWRAKEGELARTIVASPHVTQARVHIANTGSNPFQRT-AEPTASVSVVPMGSP 186

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242
                A AIR L+++AV  L + +V V+D+ G L+ + E    +   +    Q+    I 
Sbjct: 187 ITPAQANAIRFLISSAVTGLAVENVAVIDANGALIGSPEAAAAVGAGTDDRSQS----IR 242

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
             + + + A +G  N    V  E   DT+ IRE   DP+S+V  S  + + A  S+    
Sbjct: 243 ERVMRLVEARVGHGNAVVEVSVETVTDTESIREKRIDPESRVAISTDVEERADSSQN--Q 300

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
              VTV  N+P           S  +T    E+ NYEI+            ++RL++AV+
Sbjct: 301 SGEVTVASNIPD--GDAASGDGSKASTSATRERVNYEISETEKEILRGPGAIKRLTVAVL 358

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           +N   +T   G +  + + +  L  + +++SAA G +  RGD IT+ SM+ +        
Sbjct: 359 LNGVPITTATGETVMEPRSEEELGALRELISAAVGFSEERGDVITLKSME-MPTVEPQGT 417

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482
            V  S  D +     ++I      + TL    LGL  +R + + + A    +G     + 
Sbjct: 418 VVSASIFDNIYLDAMSLIQMAALALVTL---ILGLFVIRPILS-NQASVPALGAPGGDAM 473

Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ-------------------------- 516
             + +    G M N N+  D +      ++   Q                          
Sbjct: 474 DELPALGGGGFMANPNLGADLALDGEIENNETGQFEPMGGMGMGTGMGMGDMGGMGDMGG 533

Query: 517 SRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIEDR 557
                        RL  MI   +E   +ILR W   E E+R
Sbjct: 534 LPALGGGGDNPVDRLRSMIGERQEETVQILRGWL-EENEER 573


>gi|254466479|ref|ZP_05079890.1| flagellar M-ring protein FliF [Rhodobacterales bacterium Y4I]
 gi|206687387|gb|EDZ47869.1| flagellar M-ring protein FliF [Rhodobacterales bacterium Y4I]
          Length = 556

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 146/570 (25%), Positives = 243/570 (42%), Gaps = 34/570 (5%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           + Q+   +     +   + LI     ++ I+  +A     + P    LY  LE      +
Sbjct: 1   MQQIKNVWA---EMDMRKRLIAVGATVIMILSVIAMSHVASKPSMTLLYAGLESGSAGDV 57

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
             AL +    + +   GSSI VPS+   + R+ LA++GLP++    GYEL D ++ FG T
Sbjct: 58  VRALEQRGTQYEVR--GSSIYVPSTQRDELRMTLASEGLPANGGK-GYELLDSLSGFGTT 114

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN-P 182
           S M +    RA EGE+ARTI +   +  ARVHI    +  F++    PTASV I  +  P
Sbjct: 115 SQMFDAAYWRAKEGELARTIVASPHVSQARVHIANTGLNPFQRT-VEPTASVSIVPMGSP 173

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242
                A AIR LV++AV  L + +V V+D+ G L+ +++        +    Q     I 
Sbjct: 174 ITPAQANAIRFLVSSAVTGLAVENVAVIDANGALIGSSDATAAAGAGTDDRSQT----IR 229

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
             + + + A +G  N    V  E   DT+ IRE + DP S+V  S  + + A  S     
Sbjct: 230 ERVMRLVEARVGQGNAVVEVSVETVTDTESIREKLIDPKSRVAVSTDVEERADSSTN--Q 287

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
              VTV  N+P           S  NT    E+ NYEI+            ++RL++AV+
Sbjct: 288 AGEVTVASNIPD--GDAASGQGSKANTSATRERINYEISETEKEILRGPGAIKRLTVAVL 345

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           +N   +T   G +  Q + +  LA + +++SAA G ++ RGD IT+ SM+ L        
Sbjct: 346 INGTAVTNDAGETVFQPRPEDELAAMRELISAAVGFDAERGDVITLKSME-LPAVEPQGT 404

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR-----RLHNIDDAKKGEVGGK 477
               SF D L     +++      + +L++    +  +       +  +     G++ G 
Sbjct: 405 VATASFFDNLYFDAMSLVQIGALALVSLILGLFVVRPILSNQATPVAALPSPGGGDLPGL 464

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV------------SK 525
             +      +A   G     +  ++++    F     L +     +              
Sbjct: 465 PGIGGGGFMTAPDLGAGLALDGEIENNETGQFEPLGGLPAMGTGDMMGAIGLPAMGGGMD 524

Query: 526 QSDLRLLHMIEINEERFAKILRKWARSEIE 555
               RL +MI   +E   +ILR W     E
Sbjct: 525 DPVDRLRNMIGERQEETVQILRGWLEENRE 554


>gi|257484920|ref|ZP_05638961.1| flagellar MS-ring protein [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 447

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 105/424 (24%), Positives = 178/424 (41%), Gaps = 39/424 (9%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L
Sbjct: 24  LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + ANI++ +  N  ++ V S  V +ARI LA  G+  + +N G+E+ DK    G + FM+
Sbjct: 84  TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
                R LEGE+ARTI +++ +  ARVH+ +P    F +   +P+ASV++        + 
Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP L    +TV+D  G LL+  A   E  + GK     + ++  +  
Sbjct: 204 SQVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE----- 298
            +   L   LG D +++ V A ++    +     ++PD    RS +   + + S      
Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNEQRSSSSSTGG 323

Query: 299 -----TSQPESAVTVEQNM----------------------PHVSDRKVPLPRSLENTDK 331
                ++QP    T  QN                         + D     P        
Sbjct: 324 VPGALSNQPPGPATAPQNATAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPAD 383

Query: 332 K--EEQSNYEINTKSIATTHDNYKLERLSIAVVVNK-GRLTEVLGRSADQGKIDSYLAEI 388
           K  +   N+E++     T     +L RLS+AVVV+   +     G         + LA  
Sbjct: 384 KRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAADLARF 443

Query: 389 NKIV 392
            ++V
Sbjct: 444 TRLV 447


>gi|121586818|ref|ZP_01676600.1| flagellar M-ring protein FliF [Vibrio cholerae 2740-80]
 gi|153213259|ref|ZP_01948671.1| flagellar M-ring protein FliF [Vibrio cholerae 1587]
 gi|153825593|ref|ZP_01978260.1| flagellar M-ring protein FliF [Vibrio cholerae MZO-2]
 gi|153828635|ref|ZP_01981302.1| flagellar M-ring protein FliF [Vibrio cholerae 623-39]
 gi|229528855|ref|ZP_04418245.1| flagellar M-ring protein FliF [Vibrio cholerae 12129(1)]
 gi|262191383|ref|ZP_06049573.1| flagellar M-ring protein FliF [Vibrio cholerae CT 5369-93]
 gi|297582031|ref|ZP_06943950.1| flagellar M-ring protein FliF [Vibrio cholerae RC385]
 gi|121548985|gb|EAX59024.1| flagellar M-ring protein FliF [Vibrio cholerae 2740-80]
 gi|124116059|gb|EAY34879.1| flagellar M-ring protein FliF [Vibrio cholerae 1587]
 gi|148875906|gb|EDL74041.1| flagellar M-ring protein FliF [Vibrio cholerae 623-39]
 gi|149740744|gb|EDM54843.1| flagellar M-ring protein FliF [Vibrio cholerae MZO-2]
 gi|229332629|gb|EEN98115.1| flagellar M-ring protein FliF [Vibrio cholerae 12129(1)]
 gi|262032758|gb|EEY51306.1| flagellar M-ring protein FliF [Vibrio cholerae CT 5369-93]
 gi|297533726|gb|EFH72568.1| flagellar M-ring protein FliF [Vibrio cholerae RC385]
 gi|327484662|gb|AEA79069.1| Flagellar M-ring protein FliF [Vibrio cholerae LMA3894-4]
          Length = 580

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 113/559 (20%), Positives = 235/559 (42%), Gaps = 36/559 (6%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           + F      L R  +L+L+  I V +++ +   F+V  P    L    E  ++  +   L
Sbjct: 43  MDFTVGDLDLLRQVVLVLSISICVALIVMLF--FWVREPDMRPLGA-YETEELIPVLDYL 99

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
            +    +++  +G++I VP S     ++ +   GL + +  +G E+  +   FG++  ++
Sbjct: 100 DQQKQQYKL--DGNTILVPVSDYNSLKLSMVRAGL-NQNRQAGDEILMQDMGFGVSQRLE 156

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187
           +     + E ++A+ I+ +  +  ARV + +P    F +     +ASV +     +  K 
Sbjct: 157 QERLKLSRERQLAKAIEEMRQVNKARVLLALPKQSVFVRHNQEASASVFLTVRTGANLKQ 216

Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE--IEM 243
              +A+  +VA+AVP +    VTV D  G+LL++   +     +        Q E  +  
Sbjct: 217 EEIDAVVDMVASAVPGMKPSRVTVTDQHGRLLSSGSQDPVSAARRKEQELEKQQEEALRG 276

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE----- 298
            I+  L   LG+ N+ + V  EL+    +    V+DP++   RS    +D          
Sbjct: 277 KIDSVLIPILGLGNYTAQVDIELDFSAVEQTRKVFDPNTPATRSEYTLEDYNNGNVVAGV 336

Query: 299 ----TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
               ++QP +  ++ Q++  + D  V    S+     KE   NYE++T        +  +
Sbjct: 337 PGALSNQPPADASIPQDVAQMKDGSVMGQGSV----HKEATRNYELDTTISHERKQSGVI 392

Query: 355 ERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
            R ++AV V ++  +    G        ++ L  I +++    G +  RGD + + SM F
Sbjct: 393 NRQTVAVAVKSRSSVNPDTGEVTYTPLSEADLNSIRQVLIGTVGYSENRGDLLNVLSMPF 452

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
            E ++     V +      +       +ALV ++  L++      A+++L N       +
Sbjct: 453 AEPEMEQIVDVPIWEHPNFNDWVRWFASALVIIIVILVLV---RPAMKKLINPAADDDDQ 509

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
           + G       PI +   T L+ +D   +D      F    +L    N +  +     +  
Sbjct: 510 MYGP---DGMPIGADGETSLIGSD---IDGGELFEFGSGIDLP---NLHKDEDVLKAVRA 560

Query: 534 MIEINEERFAKILRKWARS 552
           ++    E  A++++ W ++
Sbjct: 561 LVANEPELAAQVVKNWMQN 579


>gi|90579927|ref|ZP_01235735.1| flagellar M-ring protein [Vibrio angustum S14]
 gi|90438812|gb|EAS63995.1| flagellar M-ring protein [Vibrio angustum S14]
          Length = 582

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 101/553 (18%), Positives = 216/553 (39%), Gaps = 29/553 (5%)

Query: 14  GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73
             +L   R +IL   + + + L +    ++  P    L    E  ++  I     +  I+
Sbjct: 45  LGNLDLLRQVILVLSVAICVALIVLVTMWIKEPEMRPLGT-YETEELIPILDHFDQKKIE 103

Query: 74  FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
           +++  +G++I VP+      ++ L   GL ++ +  G ++  +   FG++  M+      
Sbjct: 104 YQL--DGNTIRVPADEYSAIKLDLTRTGL-NAQTAEGDDILLQDMGFGVSQRMESERLKL 160

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEAI 191
           + E ++AR I+ IS +  A+V +  P    F +     TA+V +   +         ++I
Sbjct: 161 SRERQLARAIEQISQVRKAQVLLATPKQSVFVRHNQEATATVFLTLSSGGSLGQQEVDSI 220

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKAL 249
             +VA AVP L    VTV D  G+LL++   + +     K   + +  +  +   I+  L
Sbjct: 221 VDMVATAVPGLRPTRVTVTDQHGRLLSSGTEDPSTTAKRKEYELERKQEQALREKIDAIL 280

Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309
              LG+ N+ S V   ++    +     YDP +   RS    +D      +Q        
Sbjct: 281 MPVLGLGNYTSQVDVAMDFSALEETRKRYDPSTAATRSEFTLEDINGG--NQVAGIPGAL 338

Query: 310 QNMPHVSDRKV-------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
            N P V                  + +  +E   NYE++T           ++R +++V 
Sbjct: 339 SNQPPVESAIPQNVKDMQSGTNGSDGSVHRESTRNYELDTTISHKRAQTGVIDRQTVSVA 398

Query: 363 VNKGRLTEV-LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           V+   +T+   G        ++ +A+I +++    G +  RGD + + S+ F+  +   +
Sbjct: 399 VDYKTITDPKTGDVTRVPVSEAEIAKIRRLLMGGIGFSEARGDLLEVLSVPFVLPESQLA 458

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR-RLHNIDDAKKGEVGGKSIL 480
             + +      S     +  ALV +V  +++    +  L       D     E G   + 
Sbjct: 459 ADLPIWENPNFSSWVRWIAAALVIIVVIMVLVRPAMRKLLYPNQAPDGTPLDENGMPVMA 518

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
           +       +   L   +   L SS+ D+           N +  +     +  +++   +
Sbjct: 519 NSADSVGLIGAELDGGEGFELSSSSLDLP----------NLHKDEDLLKAVRALVDNEPD 568

Query: 541 RFAKILRKWARSE 553
             A++++ W   +
Sbjct: 569 LAAQVVKSWVNED 581


>gi|223038711|ref|ZP_03609004.1| flagellar M-ring protein FliF [Campylobacter rectus RM3267]
 gi|222880113|gb|EEF15201.1| flagellar M-ring protein FliF [Campylobacter rectus RM3267]
          Length = 564

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 122/568 (21%), Positives = 228/568 (40%), Gaps = 39/568 (6%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH----YDNLYVKLE 56
           M     + Q  +   +L   + L+ A  I++ +   +    + +S      Y  L+    
Sbjct: 1   MDFKTAVQQIGQVYHNLSLRQRLVAAGSIVLVVGFLVFLSIYKSSNEGYDGYSVLFENTS 60

Query: 57  VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
            +D   I   L +  + ++I + G +I VP+S V + RI +A+ G+       G+E+FDK
Sbjct: 61  AADSALIIQQLEKDKVKYKILNEG-TILVPNSDVYRERISIASLGILKDGK-VGFEIFDK 118

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
              FG T   Q++   RALEGE+ARTI+S++ I  A V I +P    F +    P+AS++
Sbjct: 119 QE-FGATDAEQKVKFQRALEGELARTIESLAPINKAIVRIAIPKETLFTERATPPSASIV 177

Query: 177 IRAINPSV--YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLS 232
           +   +      K    I++LVAAAV NL    V ++   G  L   + E   + + + + 
Sbjct: 178 LNLKDGQSLNLKQIAGIKNLVAAAVANLKPEQVKIVSQDGVPLGEEDGEYDSDQITQQIR 237

Query: 233 IVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
             +  +H +E  I   L+  + G D   + V  + +   +  +   +DP+S       + 
Sbjct: 238 YKRDAEHNLEEKIINVLSPIVGGADKVVAKVTIDFDFARKDSQSESFDPNSVARSEQNIE 297

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           +  Q S+ ++ +       N+  V   +    +  E   K    +NYEI+ K        
Sbjct: 298 EKRQGSKEAEVQGVPGAVSNIGPVEGLQD--NKMKELYSKSSSTTNYEISKKVERVKDQF 355

Query: 352 YKLERLSIAVVVNKGRLT------EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
            K++RLS AVVV+                 A     ++ LA I+ ++  A   +  RGD 
Sbjct: 356 AKIKRLSAAVVVDGKYENKKDENGNPTKEIAYVPLDENQLARIDALIRQAICFDQNRGDE 415

Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465
           IT+++ +F         +   SF ++   +    +  L +L   +L+       +     
Sbjct: 416 ITVSNFEFQRQDGQTPASKVNSFFEL---YVVPFLPILKYLFAAVLLYIFYKKVIVPFMA 472

Query: 466 IDDAKKGEVGGKSILSPPPISSA-------------VTTGLMPNDNIALDSSNQDIFSHS 512
                  E   +   S   +  +             V   L   DN   D    D+    
Sbjct: 473 KMLEDIKEEEPELPDSDDQLGDSEDTLEKFQAARKKVEEQLGIGDNFNEDDLRYDVLLEK 532

Query: 513 RNLQSRINSYVSKQSDLRLLHMIEINEE 540
             L ++     S +  + L  +++ + +
Sbjct: 533 MKLIAQ---ERSDEIAVLLQDLVKNDSD 557


>gi|42524763|ref|NP_970143.1| flagellar M-ring protein [Bdellovibrio bacteriovorus HD100]
 gi|39576973|emb|CAE78202.1| flagellar M-ring protein [Bdellovibrio bacteriovorus HD100]
          Length = 549

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 122/553 (22%), Positives = 229/553 (41%), Gaps = 27/553 (4%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           Q  +FFK+   LG T+ L + +V ++  +      F  +   Y  L+  +    V+ I  
Sbjct: 11  QFREFFKN---LGPTKRLSVIAVTVIAAVALFTMLFMASGKDYVPLFTNIPTEQVSTIVG 67

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ-GLPSSSSNSGYELFDKVNSFGLTS 124
            L+E N+ F++ D G +I++P  ++   ++ L ++ G P   S  G E+FDK   FG+ S
Sbjct: 68  KLNEKNVPFQLRDGGKTIAIPKELLHSTQMTLMSEIGSPKMGS-IGLEIFDK-QDFGMNS 125

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP-- 182
           + Q+I   RAL+GE+ R I +++ +  ++V + +P+  +F + G + +ASV++       
Sbjct: 126 YAQKINYQRALQGELMRAINTLTAVKQSKVILALPNKKTFLEEGGQASASVVVELHQGKE 185

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQAIQHEI 241
              +    +R+LVA +V  +D   VTVLD  GK+LT   +       + L +   I+ ++
Sbjct: 186 LTPEQVRGVRYLVANSVEGMDADKVTVLDERGKVLTRVADGTTGGSNELLDLKAKIEGDL 245

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           E  I   L   +G     + V A LN       E   DPD    RS +  +++     + 
Sbjct: 246 EDRIEDILTKVVGHAKVVAKVDATLNHRVISSVEESVDPDKTAIRSQQSEEESLDGSRTN 305

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
           P        N+P   D+     R  ++  K+ + +NY++             LER+S+AV
Sbjct: 306 PAGVPGSRSNLPGAEDQGTVGFR--QDVKKEIKTTNYDVPKTVRNIRESAGNLERVSVAV 363

Query: 362 VVNK----GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           VV+         +    +  + +    L +   +V  A G N+ RGD++ I ++ F    
Sbjct: 364 VVDGMMTTTTKADGTTETTWKPRSAEELRKYEDLVKNAIGFNTARGDSVKIENIQFQPED 423

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
              +  +  +      +    +    +      L  F+ +    +          E    
Sbjct: 424 FSEAEKILTTLE--RKKLIHALFKWALLGFSLALFFFIVVRPFMQWITDSFQDSVEEMLP 481

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
             +       +V    +P  + AL    + I               S+    R+L  +  
Sbjct: 482 RTIEELEELQSVDN-TLPGMSTALPVLQESIDPEK---------AESELLKDRILSSMSR 531

Query: 538 NEERFAKILRKWA 550
           +EE+ A     W 
Sbjct: 532 DEEKAANAFGMWL 544


>gi|262404479|ref|ZP_06081034.1| flagellar M-ring protein FliF [Vibrio sp. RC586]
 gi|262349511|gb|EEY98649.1| flagellar M-ring protein FliF [Vibrio sp. RC586]
          Length = 580

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 104/559 (18%), Positives = 228/559 (40%), Gaps = 36/559 (6%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           + F      L R  +L+L+  I V +++ +   F+V  P    L    E  ++  +   L
Sbjct: 43  MDFTVGDLDLLRQVVLVLSISICVALIVMLF--FWVREPDMRPLGA-YETEELIPVLDYL 99

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
            +    +++  +G++I VP S     ++ +   GL +    +G E+  +   FG++  ++
Sbjct: 100 DQQKQQYKL--DGNTILVPVSDYNSLKLSMVRAGL-NQERQAGDEILMQDMGFGVSQRLE 156

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187
           +     + E ++A+ I+ +  I  ARV + +P    F +     +ASV +     +  K 
Sbjct: 157 QERLKLSRERQLAKAIEEMRQINKARVLLALPKQSVFVRQNQEASASVFLSLRTGANLKQ 216

Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEM 243
              +A+  +VA+AVP +    VTV D  G+LL++   +       K   + +  +  +  
Sbjct: 217 EEIDAVVDMVASAVPGMKPSRVTVTDQHGRLLSSGSQDPVSAARRKEQELEKQQEDVLRD 276

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE----- 298
            I+  L   LG+ N+ + V  EL+    +    V+DP++   RS    +D          
Sbjct: 277 KIDSVLIPILGLGNYTAQVDIELDFSAVEQTRKVFDPNTPATRSEYTLEDYNNGNVVAGV 336

Query: 299 ----TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
               ++QP +  ++ Q++  + D  V    S+     KE   N+E++T        +  +
Sbjct: 337 PGALSNQPPADASIPQDVAQMKDGSVMGQGSV----HKEATRNFELDTTISHERKQSGVV 392

Query: 355 ERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
            R ++AV V ++  +    G        ++ L  I +I+    G +  RGD + + SM F
Sbjct: 393 NRQTVAVAVKSRSNVNPDTGEITYTPLSEADLNSIRQILIGTVGYSENRGDLLNVLSMQF 452

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
            E +      + +      +     + +ALV ++  L++      A+++L N       +
Sbjct: 453 AEPEAEQIADIPIWENPNFNDWIRWLASALVIIIVVLVLV---RPAMKKLINPAADSDDQ 509

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
           + G   +           G   +     +  +     +    +  + +         +  
Sbjct: 510 MYGPDGMPIGADGETSLIGSEIDSGELFEFGSGIDLPNLHKDEDVLKA---------VRA 560

Query: 534 MIEINEERFAKILRKWARS 552
           ++    E  A++++ W ++
Sbjct: 561 LVANEPELAAQVVKNWMQN 579


>gi|15642132|ref|NP_231764.1| flagellar MS-ring protein [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121727194|ref|ZP_01680361.1| flagellar M-ring protein FliF [Vibrio cholerae V52]
 gi|147674591|ref|YP_001217656.1| flagellar MS-ring protein [Vibrio cholerae O395]
 gi|153801651|ref|ZP_01956237.1| flagellar M-ring protein FliF [Vibrio cholerae MZO-3]
 gi|153818978|ref|ZP_01971645.1| flagellar M-ring protein FliF [Vibrio cholerae NCTC 8457]
 gi|153822880|ref|ZP_01975547.1| flagellar M-ring protein FliF [Vibrio cholerae B33]
 gi|227082258|ref|YP_002810809.1| flagellar M-ring protein FliF [Vibrio cholerae M66-2]
 gi|229507782|ref|ZP_04397287.1| flagellar M-ring protein FliF [Vibrio cholerae BX 330286]
 gi|229511981|ref|ZP_04401460.1| flagellar M-ring protein FliF [Vibrio cholerae B33]
 gi|229513784|ref|ZP_04403246.1| flagellar M-ring protein FliF [Vibrio cholerae TMA 21]
 gi|229519117|ref|ZP_04408560.1| flagellar M-ring protein FliF [Vibrio cholerae RC9]
 gi|229522086|ref|ZP_04411503.1| flagellar M-ring protein FliF [Vibrio cholerae TM 11079-80]
 gi|229607327|ref|YP_002877975.1| flagellar MS-ring protein [Vibrio cholerae MJ-1236]
 gi|254226365|ref|ZP_04919954.1| flagellar M-ring protein FliF [Vibrio cholerae V51]
 gi|254849219|ref|ZP_05238569.1| flagellar MS-ring protein [Vibrio cholerae MO10]
 gi|262153482|ref|ZP_06028612.1| flagellar M-ring protein FliF [Vibrio cholerae INDRE 91/1]
 gi|262167493|ref|ZP_06035199.1| flagellar M-ring protein FliF [Vibrio cholerae RC27]
 gi|298497845|ref|ZP_07007652.1| flagellar M-ring protein FliF [Vibrio cholerae MAK 757]
 gi|9656684|gb|AAF95278.1| flagellar M-ring protein FliF [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121630439|gb|EAX62832.1| flagellar M-ring protein FliF [Vibrio cholerae V52]
 gi|124122828|gb|EAY41571.1| flagellar M-ring protein FliF [Vibrio cholerae MZO-3]
 gi|125621115|gb|EAZ49460.1| flagellar M-ring protein FliF [Vibrio cholerae V51]
 gi|126510473|gb|EAZ73067.1| flagellar M-ring protein FliF [Vibrio cholerae NCTC 8457]
 gi|126519576|gb|EAZ76799.1| flagellar M-ring protein FliF [Vibrio cholerae B33]
 gi|146316474|gb|ABQ21013.1| flagellar M-ring protein FliF [Vibrio cholerae O395]
 gi|227010146|gb|ACP06358.1| flagellar M-ring protein FliF [Vibrio cholerae M66-2]
 gi|227014029|gb|ACP10239.1| flagellar M-ring protein FliF [Vibrio cholerae O395]
 gi|229341011|gb|EEO06016.1| flagellar M-ring protein FliF [Vibrio cholerae TM 11079-80]
 gi|229343806|gb|EEO08781.1| flagellar M-ring protein FliF [Vibrio cholerae RC9]
 gi|229348965|gb|EEO13922.1| flagellar M-ring protein FliF [Vibrio cholerae TMA 21]
 gi|229351946|gb|EEO16887.1| flagellar M-ring protein FliF [Vibrio cholerae B33]
 gi|229355287|gb|EEO20208.1| flagellar M-ring protein FliF [Vibrio cholerae BX 330286]
 gi|229369982|gb|ACQ60405.1| flagellar M-ring protein FliF [Vibrio cholerae MJ-1236]
 gi|254844924|gb|EET23338.1| flagellar MS-ring protein [Vibrio cholerae MO10]
 gi|262024065|gb|EEY42760.1| flagellar M-ring protein FliF [Vibrio cholerae RC27]
 gi|262030719|gb|EEY49353.1| flagellar M-ring protein FliF [Vibrio cholerae INDRE 91/1]
 gi|297542178|gb|EFH78228.1| flagellar M-ring protein FliF [Vibrio cholerae MAK 757]
          Length = 580

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 113/559 (20%), Positives = 235/559 (42%), Gaps = 36/559 (6%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           + F      L R  +L+L+  I V +++ +   F+V  P    L    E  ++  +   L
Sbjct: 43  MDFTVGDLDLLRQVVLVLSISICVALIVMLF--FWVREPDMRPLGA-YETEELIPVLDYL 99

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
            +    +++  +G++I VP S     ++ +   GL + +  +G E+  +   FG++  ++
Sbjct: 100 DQQKQQYKL--DGNTILVPVSDYNSLKLSMVRAGL-NQNRQAGDEILMQDMGFGVSQRLE 156

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187
           +     + E ++A+ I+ +  +  ARV + +P    F +     +ASV +     +  K 
Sbjct: 157 QERLKLSRERQLAKAIEEMRQVNKARVLLALPKQSVFVRHNQEASASVFLTVRTGANLKQ 216

Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE--IEM 243
              +A+  +VA+AVP +    VTV D  G+LL++   +     +        Q E  +  
Sbjct: 217 EEIDAVVDMVASAVPGMKPSRVTVTDQHGRLLSSGSQDPVSAARRKEQELEKQQEEALRG 276

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE----- 298
            I+  L   LG+ N+ + V  EL+    +    V+DP++   RS    +D          
Sbjct: 277 KIDSVLIPILGLGNYTAQVDIELDFSAVEQTRKVFDPNTPATRSEYTLEDYNNGNVVAGV 336

Query: 299 ----TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
               ++QP +  ++ Q++  + D  V    S+     KE   NYE++T        +  +
Sbjct: 337 PGALSNQPPADASIPQDVAQMKDGSVMGQGSV----HKEATRNYELDTTISHERKQSGVI 392

Query: 355 ERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
            R ++AV V ++  +    G        ++ L  I +++    G +  RGD + + SM F
Sbjct: 393 NRQTVAVAVKSRSSVNPDTGEVTYTPLSEADLNSIRQVLIGTVGYSENRGDLLNVLSMPF 452

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
            E ++     V +      +       +ALV ++  L++      A+++L N       +
Sbjct: 453 AEPEMEQIVDVPIWEHPNFNDWVRWFASALVIIIVILVLV---RPAMKKLINPAADNDDQ 509

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
           + G       PI +   T L+ +D   +D      F    +L    N +  +     +  
Sbjct: 510 MYGP---DGMPIGADGETSLIGSD---IDGGELFEFGSGIDLP---NLHKDEDVLKAVRA 560

Query: 534 MIEINEERFAKILRKWARS 552
           ++    E  A++++ W ++
Sbjct: 561 LVANEPELAAQVVKNWMQN 579


>gi|254291370|ref|ZP_04962163.1| flagellar M-ring protein FliF [Vibrio cholerae AM-19226]
 gi|150422700|gb|EDN14654.1| flagellar M-ring protein FliF [Vibrio cholerae AM-19226]
          Length = 580

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 113/559 (20%), Positives = 235/559 (42%), Gaps = 36/559 (6%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           + F      L R  +L+L+  I V +++ +   F+V  P    L    E  ++  +   L
Sbjct: 43  MDFTVGDLDLLRQVVLVLSISICVALIVMLF--FWVREPDMRPLGA-YETEELIPVLDYL 99

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
            +    +++  +G++I VP S     ++ +   GL + +  +G E+  +   FG++  ++
Sbjct: 100 DQQKQQYKL--DGNTILVPVSDYNSLKLSMVRAGL-NQNRQAGDEILMQDMGFGVSQRLE 156

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187
           +     + E ++A+ I+ +  +  ARV + +P    F +     +ASV +     +  K 
Sbjct: 157 QERLKLSRERQLAKAIEEMRQVNKARVLLALPKQSVFVRHNQEASASVFLTVRTGANLKQ 216

Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE--IEM 243
              +A+  +VA+AVP +    VTV D  G+LL++   +     +        Q E  +  
Sbjct: 217 EEVDAVVDMVASAVPGMKPSRVTVTDQHGRLLSSGSQDPVSAARRKEQELEKQQEEALRG 276

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE----- 298
            I+  L   LG+ N+ + V  EL+    +    V+DP++   RS    +D          
Sbjct: 277 KIDSVLIPILGLGNYTAQVDIELDFSAVEQTRKVFDPNTPATRSEYTLEDYNNGNVVAGV 336

Query: 299 ----TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
               ++QP +  ++ Q++  + D  V    S+     KE   NYE++T        +  +
Sbjct: 337 PGALSNQPPADASIPQDVAQMKDGSVMGQGSV----HKEATRNYELDTTISHERKQSGVI 392

Query: 355 ERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
            R ++AV V ++  +    G        ++ L  I +++    G +  RGD + + SM F
Sbjct: 393 NRQTVAVAVKSRSSVNPDTGEVTYTPLSEADLNSIRQVLIGTVGYSENRGDLLNVLSMPF 452

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
            E ++     V +      +       +ALV ++  L++      A+++L N       +
Sbjct: 453 AEPEMEQIVDVPIWEHPNFNDWVRWFASALVIIIVILVLV---RPAMKKLINPAADNDDQ 509

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
           + G       PI +   T L+ +D   +D      F    +L    N +  +     +  
Sbjct: 510 MYGP---DGMPIGADGETSLIGSD---IDGGELFEFGSGIDLP---NLHKDEDVLKAVRA 560

Query: 534 MIEINEERFAKILRKWARS 552
           ++    E  A++++ W ++
Sbjct: 561 LVANEPELAAQVVKNWMQN 579


>gi|148976413|ref|ZP_01813119.1| flagellar M-ring protein [Vibrionales bacterium SWAT-3]
 gi|145964236|gb|EDK29492.1| flagellar M-ring protein [Vibrionales bacterium SWAT-3]
          Length = 580

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 106/554 (19%), Positives = 228/554 (41%), Gaps = 36/554 (6%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
               L R  +L+L+  I V +++ +   F+V  P    L    E  ++  +   L +  I
Sbjct: 48  GDLDLLRQVVLVLSISICVALIVMLF--FWVKEPEMRPLGA-YETEELIPVLDYLDQQKI 104

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
           ++ +   G++ISVP+S     ++++   GL +   N+G ++  +   FG++  +++    
Sbjct: 105 EYSLE--GNTISVPASEYNSLKLNMVRAGL-NQERNAGDDILMQDMGFGVSQRLEQERLK 161

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEA 190
            + E ++A+ I+ +  +  A+V + +P    F +     +ASV +     +  K    ++
Sbjct: 162 LSRERQLAKAIEQMKQVRKAQVLLALPKQSVFVRHNQEASASVFLTLKTGTNLKQQEVDS 221

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNINKA 248
           +  +VA+AVP +    +TV D  G+LL++   +       K   + +  +  +   I+  
Sbjct: 222 VVDMVASAVPGMKTSRITVTDQHGRLLSSGSQDPMSAARRKEHELERNQEQALREKIDSI 281

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET--------- 299
           L   LG  N+ + V  +L+    +     +DP++   RS    +D     T         
Sbjct: 282 LIPILGFGNYTAQVDIQLDFSAVEQTRKRFDPNTPATRSEYTLEDYNNGNTVAGIPGALS 341

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           +QP S  ++ Q++  + D  +    S+     KE   N+E++T           + R ++
Sbjct: 342 NQPPSDASIPQDVAQMKDGAMTGQGSV----HKEATRNFELDTTISHERKQTGTVNRQTV 397

Query: 360 AVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           +V + ++  +    G         S +  I +++    G +  RGD + + SM F     
Sbjct: 398 SVAIKDRQSINPDTGEVVHTPIPASEINAIRQVLIGTVGFDESRGDLLNVLSMQFAPQIT 457

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
                V +      +       +ALV +V  L++      A+++L N       ++ G  
Sbjct: 458 DVVPDVPIWEHPNFNDWVRWFASALVIIVVVLVLV---RPAIKKLLNPAADNDEQMYGP- 513

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
                PI +   T L+  D   ++      F  S +L    N +  +     +  ++   
Sbjct: 514 --DGMPIGADGETSLIGGD---IEGGELFEFGSSIDLP---NLHKDEDVLKAVRALVANE 565

Query: 539 EERFAKILRKWARS 552
            E  A++++ W   
Sbjct: 566 PELAAQVVKNWMAD 579


>gi|83859389|ref|ZP_00952910.1| flagellar M-ring protein [Oceanicaulis alexandrii HTCC2633]
 gi|83852836|gb|EAP90689.1| flagellar M-ring protein [Oceanicaulis alexandrii HTCC2633]
          Length = 551

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 149/558 (26%), Positives = 251/558 (44%), Gaps = 19/558 (3%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           AIL+QL +F       G  R+  +  +        +     +NS     L+  L  +D  
Sbjct: 3   AILEQLSRF-------GVGRLAAILGLTAGAAAALVFFTMSMNSNGQALLFSGLGPADAA 55

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            +S  L +A I + + + GS++ V +  V +AR+ +A+ G  S  S  GYE+FD+ ++ G
Sbjct: 56  AVSQRLDQAGISYELQEGGSAVYVSTDQVDEARMRVASGGALSFGS-VGYEIFDETDALG 114

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
            TSF+Q +   RALEGE+AR+I +++ + AARVH+V+P+   F +    P+ASV+I    
Sbjct: 115 TTSFVQNVNAKRALEGELARSINTLNTVSAARVHLVLPERRLFSREQQEPSASVVISVRG 174

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQ-AIQH 239
                    IR+LVA AVP L    +T+ D  G+LL A  + E ++LG  L   Q AI+ 
Sbjct: 175 ELPSAQINTIRNLVATAVPGLQANRITLADDQGRLLAAPSDAEGDVLGAMLDDRQNAIER 234

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           +++  I   +   +G    R AV AE+N ++Q    + YDPD +VE S R  ++ +    
Sbjct: 235 DLQQKIRDLVEGIVGSGGVRVAVTAEINRESQTRTRLEYDPDGQVEVSRRAIEERRSEPV 294

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           +     V+V +N P            L  ++    + NY+   +   +      LERL++
Sbjct: 295 NS--GGVSVSENTPDAEAGANGETPLLATSESSTTERNYQNTQEETVSIIQAGDLERLAV 352

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR----RGDTI-TITSMDFL 414
           +VVV++  +    G  + + + ++ L +I  +V+AA G  +      GD I  +TSM F 
Sbjct: 353 SVVVDEVAVVGEDGTLSFEPRSEAELTQIRNLVAAAVGFPTDTTLTDGDQILQVTSMRFN 412

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
              L         F  +    F  +    V  V  LLV  L    L +    + +     
Sbjct: 413 RPDLTLGTPAPEGF-SLARLDFMRIAEIAVLFVTALLVILLVARPLVQGAVGNVSAARPA 471

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
              +              L+ N +  +     D  S      ++I   V K S  ++  +
Sbjct: 472 LAGAGSGGGKALPDNVQALLGNSDGTVMLPEGD-PSDDHIDVAQIEGQVKKSSVRKVAAL 530

Query: 535 IEINEERFAKILRKWARS 552
           +E + +    ILR W   
Sbjct: 531 VEQHPDESMSILRTWMHD 548


>gi|154174065|ref|YP_001408875.1| flagellar MS-ring protein [Campylobacter curvus 525.92]
 gi|112803763|gb|EAU01107.1| flagellar M-ring protein FliF [Campylobacter curvus 525.92]
          Length = 567

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 121/569 (21%), Positives = 236/569 (41%), Gaps = 28/569 (4%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEV 57
           A+L Q+ Q ++  +   R +I+   S+++V   L   + +          Y  L+  +  
Sbjct: 5   ALLHQISQIYQKLS--LRQKIVAAGSIVVVVGFLVFLSIYKDMKGDTYAGYSVLFENISP 62

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
           +D   I   L++ ++ +++++ G +I VP+  V K RI +A  G+P  S   G+E+FDK 
Sbjct: 63  NDSALIIDQLNKDSVSYKLANEG-TILVPTGDVYKERIAVATLGIPKESK-IGFEIFDKQ 120

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
             FG T   Q +   RALEGE+ARTI+S+S I  A V I +P    F +  + PTAS+++
Sbjct: 121 E-FGSTDAEQRVKFQRALEGELARTIESLSSIQKATVRIAIPKESVFTERQSPPTASIVV 179

Query: 178 RAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSI 233
                     K    I++LVAAAV NL+  +V +++  G  L   + E   +++ + +  
Sbjct: 180 ELKPGVSLSAKQIFGIKNLVAAAVTNLNTENVKIVNQDGVALGEEDGEFDSDMIAQQIRY 239

Query: 234 VQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292
            +  +   E  I   LA  + G D   + V  + + D +  +   YDP++ V     + +
Sbjct: 240 KREFETNYEQKIINVLAPIVGGTDRVVAKVNIDFDFDKKDSQSETYDPNNVVRSESNIEE 299

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
             Q S  ++ +       N+  V  + +      E  +K  +Q+NYEI+ K         
Sbjct: 300 KRQGSAPNEIQGVPGAVSNIGPV--QGLSDSNIKEQYNKSSQQTNYEISKKITNIKGQFA 357

Query: 353 KLERLSIAVVVN------KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
            + R+S AVVV+      K       G         +    I  ++  A G +++RGD +
Sbjct: 358 SIVRVSAAVVVDGLYQPKKDEAGNPTGDIEYVALTQAQKDSITNLIKQAIGYSAQRGDEV 417

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
           T+ + +F   +L    +        +  +    +  L ++   LL+       +      
Sbjct: 418 TLDNFEF---KLAKDVSTSQRMDGFMHNYILPFVPLLKYIFAALLLYIFYKKVIVPFMQK 474

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
              +  +                    +     A     + +       +  +   V  +
Sbjct: 475 MLEEAKDEDEPLPQDELEEIEIDAEDTLEKFKAARKKVEEQLGLSGDFNEDELRYDVLLE 534

Query: 527 SDLRLLHMIEINEERFAKILRKWARSEIE 555
              ++  +I    E  A +L++  +++ +
Sbjct: 535 ---KMKTVILERSEEIANLLQEMVKNDND 560


>gi|296133049|ref|YP_003640296.1| flagellar M-ring protein FliF [Thermincola sp. JR]
 gi|296031627|gb|ADG82395.1| flagellar M-ring protein FliF [Thermincola potens JR]
          Length = 517

 Score =  337 bits (864), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 119/561 (21%), Positives = 221/561 (39%), Gaps = 57/561 (10%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           + +  +++  + + T   +  I++ A  ++  + + +        P Y  L+ +L+  D 
Sbjct: 6   LQLKTKIVGLWNNMTRNQKIVIIVSALFLVGTLAVLVRG---ATRPDYAPLFTQLDPQDA 62

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +    L E  I ++++D G++I VPS  V + RI L+++G P+     G+E FD+   F
Sbjct: 63  GKTVEWLKENKIPYQLADGGTTILVPSKDVDQTRISLSSEGYPTGGV-VGFEAFDQT-KF 120

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           G T   +    +RAL+GE+ RTI+  S +  ARVHIV+P+   F +     TA+V ++  
Sbjct: 121 GETDTDRRARFIRALQGELTRTIERFSEVDKARVHIVLPEPSLFLEEQKNATAAVWLQLK 180

Query: 181 NPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN------EMERNILGKSLS 232
                     + +  LVA +V  L   +VTV+D  G +L+ +        ++ +    L 
Sbjct: 181 PTKTLDENQVKGLVKLVANSVEGLSPENVTVVDMNGNILSESLDFSKEAQQQKLSMTQLE 240

Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292
           I +  Q +++ ++   L   +G+      V AEL+ D  Q +   Y  D  V    +  +
Sbjct: 241 IQKTFQADLQRSLQSMLEKVVGIGKVVCRVRAELDFDQIQKKTENYG-DKHVLSEQKTEQ 299

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
            +  S T+ P++      N+P           S   +   +   NY  + +    T    
Sbjct: 300 SSSSSNTATPQNTPGTAGNIPGYV---ATGGNSNSQSSSSDVVRNYVHDKEETVQTVAPG 356

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
            ++RLS++V+++K                      I + V  A GIN  RGD +++  M 
Sbjct: 357 SVKRLSVSVMIDK-------------AINQQQQKAIEEAVVNAAGINRDRGDQVSVIGMP 403

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F                   +    T+I         LL+    +  +R L      + G
Sbjct: 404 FNTEYQQEMAREMA-----QADRKQTIILFGSLGAVLLLIIVAVILRVRMLKKEQLEELG 458

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
           E+               TT L       +    +   +     + RI   V         
Sbjct: 459 EIA--------------TTPLPLKAMEEIIEIEEKELTPEEKEKIRIKEQV--------E 496

Query: 533 HMIEINEERFAKILRKWARSE 553
            +   N    A++L+ W   E
Sbjct: 497 KVAGENPADVAQLLKTWLAEE 517


>gi|331645402|ref|ZP_08346506.1| flagellar M-ring protein FliF [Escherichia coli M605]
 gi|331045564|gb|EGI17690.1| flagellar M-ring protein FliF [Escherichia coli M605]
          Length = 548

 Score =  336 bits (861), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 125/549 (22%), Positives = 239/549 (43%), Gaps = 41/549 (7%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           +  +L+    + V +   + +  +  +  Y +LY + E   V++I   L    + +RI  
Sbjct: 23  KRWVLMAGVGLAVAVTAIIVSVLWTGNRGYVSLYGRQENLPVSQIVTVLDGEKLTYRIDP 82

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
               I VP   + K R+ LAA+G+  +   SGYEL DK    G + F+Q +   R+LEGE
Sbjct: 83  QSGQILVPEDALSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSSQFVQNVRYKRSLEGE 141

Query: 139 IARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINPSVY--KSAEAIRHLV 195
           +A++I S+  + +ARVH+ + +  SF      + +ASV++R    +        AI HLV
Sbjct: 142 LAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYGAKLNMDQVNAIVHLV 201

Query: 196 AAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINKALAA 251
           + ++P L    V+V+D  G LLT    A E       K   I++ IQ +I  ++   L +
Sbjct: 202 SGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKIRASVANVLDS 261

Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE-SAVTVEQ 310
            +G  N+R +V+ +L++ T    +  Y    K+ R     +    S+T+Q          
Sbjct: 262 LVGTGNYRVSVMPDLDLSTIDETQEHYGDAPKINR----EESVLDSDTNQVAMGVPGSLS 317

Query: 311 NMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365
           N P ++  ++             +   E + +Y  +       H  + ++RL++AVV+N+
Sbjct: 318 NRPPIAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHPGFAVKRLNVAVVLNQ 377

Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425
                     A +        ++  +++ A GI+++RGD ++++ ++F+   +     + 
Sbjct: 378 NA-------PALKNWKPEQTTQLTALLNNAAGIDAQRGDNLSLSLLNFVPQAVPVEPVIP 430

Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485
           +   D       +V+  +  +   LL   L    +R L     A +  V         P 
Sbjct: 431 LWKDD-------SVLAWVRLIGCGLLALLLLFFVVRPLMKRLTAVRAPV-------ITPE 476

Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545
             AV+   +        + +        +L S+ +    K   L+ L M + +  R A++
Sbjct: 477 PEAVSEPWIAMPEEERKNVDLPSLPGDDSLPSQSSGLEVKLEFLQKLAMSDTD--RVAEV 534

Query: 546 LRKWARSEI 554
           LR+W  S  
Sbjct: 535 LRQWITSNE 543


>gi|300936110|ref|ZP_07151050.1| flagellar M-ring protein FliF [Escherichia coli MS 21-1]
 gi|300458730|gb|EFK22223.1| flagellar M-ring protein FliF [Escherichia coli MS 21-1]
          Length = 551

 Score =  336 bits (861), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 130/567 (22%), Positives = 249/567 (43%), Gaps = 44/567 (7%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L Q    F+   +  +   L+    + V     + +  +  +  Y +LY + E   V++I
Sbjct: 8   LTQAFPAFRLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQI 67

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    + +RI      I VP   + K R+ LAA+G+  +   SGYEL DK    G +
Sbjct: 68  VTVLDGEKLSYRIDPQSGQILVPEDELSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSS 126

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINP 182
            F+Q +   R+LEGE+A++I S+  + +ARVH+ + +  SF      + +ASV++R    
Sbjct: 127 QFVQNVRYKRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYG 186

Query: 183 SVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQA 236
           +        AI HLV+ ++P L    V+V+D  G LLT    A E       K   I++ 
Sbjct: 187 AKLNMDQVNAIVHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKD 246

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           IQ +   ++   L + +G  N+R +V+ +L++      +  Y    K+ R     ++   
Sbjct: 247 IQDKTRASVANVLDSLVGSGNYRVSVMPDLDLSNIDETQEHYGDAPKINR----EENVLD 302

Query: 297 SETSQPE-SAVTVEQNMPHVSDRKVPLPRSLENTDK--------KEEQSNYEINTKSIAT 347
           S+T+Q          N P V+  +V       + ++         E + +Y  +      
Sbjct: 303 SDTNQVAMGVPGSLSNRPPVAPNQVTNGAMPADENRSPEALSKHSESKRDYSYDRSVQHI 362

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
            H  + ++RL++AVV+N+          A +        ++  +++ A GI+++RGD +T
Sbjct: 363 QHPGFTVKRLNVAVVLNQNA-------PALKNWKPEQTTQLTALLNNAAGIDAQRGDNLT 415

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           ++ ++F+   +     + +   D +    A V      L+  LL+ F+    ++RL  + 
Sbjct: 416 LSLLNFVPQAVPVEPIIPLWKDDSV---LAWVRLIGCGLLALLLLFFVVRPVMKRLTAVR 472

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
                      +++P P + +     MP +     + +        +L S+ +    K  
Sbjct: 473 AP---------VITPEPEAVSEPWIAMPEEE--RKNVDLPSLPGDDSLPSQSSGLEVKLE 521

Query: 528 DLRLLHMIEINEERFAKILRKWARSEI 554
            L+ L M + +  R A++LR+W  S  
Sbjct: 522 FLQKLAMSDTD--RVAEVLRQWITSNE 546


>gi|260432137|ref|ZP_05786108.1| flagellar M-ring protein FliF [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415965|gb|EEX09224.1| flagellar M-ring protein FliF [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 531

 Score =  336 bits (861), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 147/554 (26%), Positives = 235/554 (42%), Gaps = 27/554 (4%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           + Q+   +    SL R + +I+A   ++  +  +A    V SP    LY  LE      I
Sbjct: 1   MQQIGTVWA---SLDRRKQIIVAGAAILVFLSVLAMSRVVTSPSMTLLYAGLEAGAAGDI 57

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
             AL +  + + I   G SI VP S   + R+ LA++GLP++  N GYEL D ++ FG T
Sbjct: 58  VRALDQRGVTYEIR--GGSIYVPVSKRDELRMTLASEGLPANG-NRGYELLDSLSGFGTT 114

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
           S M +    RA EGE+ARTI S   +  ARVHI       F++  A PTASV +      
Sbjct: 115 SQMFDAAYWRAKEGELARTIVSSPHVSQARVHIANGSSNPFQRSVA-PTASVYLVPAGAR 173

Query: 184 VY-KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242
           V  + A+AIR LVA+AV  L   DV V+DS G ++   E                     
Sbjct: 174 VTVEQAKAIRFLVASAVTGLAPEDVAVIDSNGAVIGPQEAVVATDTADDKARLL-----R 228

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
             + + + A +G  N    V  +   +T+ IRE  +DP  +V  S  + + +  S     
Sbjct: 229 ERVLRLVEARVGPGNAVVEVSVDTVTETESIRERRFDPKGRVAISTDIEERSDSSRN--Q 286

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
            S VTV  N+P           S     +  E+ NYE++   +        ++RL++AV+
Sbjct: 287 SSDVTVASNLPD--GDAAGGDESNSTATQTRERVNYEVSETELEVHRVPGAIKRLTVAVI 344

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           VN  R  +  G    +   +  L  + ++V++A G ++ RGD IT+ SM+ L +      
Sbjct: 345 VNGTRTVDASGTPVFEPMPEPELEALQELVASAVGFDAERGDVITLKSME-LPDLEPQGT 403

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI-LS 481
               S    +     ++I   V  + +L+   +GL  +R +                  +
Sbjct: 404 LATASIWHSIHLDAMSLIQMAVLAIVSLV---MGLFVIRPILTSAPVAALPPAANGPNAA 460

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
             P            +   L ++ +   +     Q+R    V+     RL  MI   +E 
Sbjct: 461 DAPFLVGEIEDAAGQELTQLPAAPEQGSTTPAIAQARSEDAVA-----RLRSMIGDKQEE 515

Query: 542 FAKILRKWARSEIE 555
             +ILR W     E
Sbjct: 516 TVEILRSWLEESEE 529


>gi|149188085|ref|ZP_01866380.1| flagellar M-ring protein [Vibrio shilonii AK1]
 gi|148838073|gb|EDL55015.1| flagellar M-ring protein [Vibrio shilonii AK1]
          Length = 582

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 112/551 (20%), Positives = 234/551 (42%), Gaps = 33/551 (5%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
            L   R ++L   I + + L +   F+V  P    L V  E  ++  +   L +  + ++
Sbjct: 50  DLDLLRQIVLVLSISICVALIVMLFFWVKEPEMRPLGV-YETEELIPVLDYLDQKKVQYK 108

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135
           +   G+++SVP+S     ++ +   G+  +S N+G ++  +   FG++  +++     + 
Sbjct: 109 LE--GNALSVPASEYNNLKLDMVRAGINRAS-NTGDDILMQDMGFGVSQRLEQERLKLSR 165

Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEAIRH 193
           E ++ + I+ +  +  ARV + +P    F +     +ASV +     +V +    +++  
Sbjct: 166 ERQLGKAIEQMKQVRTARVLLALPKQSVFVRHNQEASASVFLTLATGAVLRQQEVDSVVD 225

Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKALAA 251
           +VA+AVP +    +TV D  G+LL++   +   +   K   + Q  +  +   I+  L  
Sbjct: 226 MVASAVPGMKPSRITVTDQHGRLLSSGSQDAASMARRKEQELEQNQEQALREKIDSVLIP 285

Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------TSQP 302
            LG+ N+ + V  EL+    +     +DP++   RS    +D              ++QP
Sbjct: 286 ILGLGNYTAQVDIELDFSAVEQTRKRFDPNTPATRSEYTLEDYNNGNVVAGVPGALSNQP 345

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
            +  ++  ++  + D  +    S+     KE   N+E++T        +  + R ++AV 
Sbjct: 346 PADASIPTDVAQMKDGSIMGQGSV----HKEATRNFELDTTISHERKQSGVVNRQTVAVA 401

Query: 363 V-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           + N+  +    G    Q + +S LA I +++  A G N  RGD + + SM F E      
Sbjct: 402 IKNRSSVNPDTGEVTYQPRSESELAAIRQVLIGAVGFNENRGDLLNVLSMTFEEPTTDLL 461

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
             V +      +       +ALV +V   ++      A+++L N   A + E        
Sbjct: 462 PDVPIWEHPNFNDWIRWFASALVIIVVVFVLI---RPAMKKLLNP--AAQEEDDQLYGPD 516

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
             P+ +   T L+  D   +D S    FS   +L    N +  +     +  ++    E 
Sbjct: 517 GLPLGADGETSLIGTD---IDGSELFEFSTGIDLP---NLHKDEDVLKAVRALVANEPEL 570

Query: 542 FAKILRKWARS 552
            A++++ W   
Sbjct: 571 AAQVVKNWMAE 581


>gi|58038899|ref|YP_190863.1| flagellar MS-ring protein [Gluconobacter oxydans 621H]
 gi|58001313|gb|AAW60207.1| Flagellar M-ring protein FliF [Gluconobacter oxydans 621H]
          Length = 482

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 118/484 (24%), Positives = 209/484 (43%), Gaps = 18/484 (3%)

Query: 84  SVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTI 143
            VP   V +AR+ LA  GLP S  + GYE+FDK NSF  T F Q I   RALEGE+ R+I
Sbjct: 1   MVPDDDVARARLLLAQSGLP-SGGSVGYEIFDKGNSFTATQFEQTINETRALEGELERSI 59

Query: 144 QSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPN 201
           + I G+  ARVH+V+     F        ASV++          +S  A+ +LV+AAVP 
Sbjct: 60  RLIHGVRNARVHLVLRHRELFSTDEQNAQASVLLSMDGGRRLDEESIAAVVNLVSAAVPG 119

Query: 202 LDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQA-IQHEIEMNINKALAAFLGVDNFRS 260
           LD  +++++D+ G +L       +  G+S    +  I+  I   +   L + LG  + R 
Sbjct: 120 LDAHNISLIDNRGHVLLKQGEGNSNGGQSAEEQRQLIEQRIAREVEDLLGSSLGPGHVRV 179

Query: 261 AVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV 320
                +N D  +  +  YDPD +V RS +   +  +S  +Q  +  TV  N+P+      
Sbjct: 180 EANVTMNNDHVRETQENYDPDQQVLRSQQTKTE--KSINTQGSTNTTVSNNLPNA---NA 234

Query: 321 PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380
              ++   ++++E+ +NYEI+        D  ++ R+S+AV+V+    ++  G ++ Q +
Sbjct: 235 GQQQNGSQSNRQEQTNNYEISKTVRTLVQDQPRIARISMAVMVDGISQSDGKGHASWQPR 294

Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDIL-SRHFATV 439
               L  +  +  +A G +  RGD +T+ SM F +  +               S     +
Sbjct: 295 NQEELGRLTALTKSAVGFDQSRGDVVTVMSMKFTDMDMEMKPETSGWSKFFTHSNQMEAI 354

Query: 440 INALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN- 498
              L      +++ F+    LR +      K          +P    S+     +P+   
Sbjct: 355 RFGLFAACLAMVLFFVVRPLLRPIGEPSSGKLLNFAASKDRTPAVDLSSQGAVYLPDSQS 414

Query: 499 -------IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWAR 551
                  +     N +         S +   +   S  +++ ++E +      ++R W  
Sbjct: 415 ERARTPMLEAAYVNAEPVDEETVSVSGVQGRIRASSVQKVVDLVETHPSESIALVRGWLM 474

Query: 552 SEIE 555
              E
Sbjct: 475 PSQE 478


>gi|195952552|ref|YP_002120842.1| flagellar M-ring protein FliF [Hydrogenobaculum sp. Y04AAS1]
 gi|195932164|gb|ACG56864.1| flagellar M-ring protein FliF [Hydrogenobaculum sp. Y04AAS1]
          Length = 500

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 132/555 (23%), Positives = 245/555 (44%), Gaps = 67/555 (12%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           IL+ L + F+   +L +T+ +I+ S+ +V  +L     F  +  HY  LY  L   D+  
Sbjct: 6   ILNNLKERFQ---ALNKTQQIIVLSIPVVLALLTGLIFFLTSRVHYAVLYGDLNNRDMAA 62

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I+  L + N+ ++I+ +G +I VP     + R+ LAA GLP+     G++L +K    G+
Sbjct: 63  IAEQLEKDNVKYKITQDGRTILVPKQEARQLRLKLAAMGLPTKGYP-GFKLLNK-MPLGM 120

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T FMQ +   RALE E++ TI     I  A+V++ +P    F     +P+ASV I     
Sbjct: 121 TDFMQHVEYQRALEEELSNTILGFRNIEKAKVNLAIPKPSIFITQSQKPSASVFIELKPG 180

Query: 183 S--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQ 238
           +    +   AIR+LVAA+VP+L    VTV+DS G  LT   N     +  + L +   ++
Sbjct: 181 ASITRRQVIAIRNLVAASVPDLTPNRVTVVDSNGVDLTEELNNPSSYLTNEQLRVKTDLE 240

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
           + I  ++ + L   LG +N R AV  E +    + +   Y+P++    S +  ++     
Sbjct: 241 NSITKHLEQVLGQALGYNNVRVAVDVEPDFSQVETKSKNYNPNTTAIVSQQKKQETTTGT 300

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
           +           N+P +S  +   P +   + KKE  +NY+++ +         +++R+S
Sbjct: 301 S--VSGVPGTASNIPPMSGLR---PNANFQSTKKEVTTNYDVSVEKTHVVDKTIRIKRMS 355

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           + V+VN                 +  L  I ++V AA G++ +RGDT+++ ++ F    +
Sbjct: 356 VGVIVNAD-------------LKNVNLNSIRQLVIAAAGVDPKRGDTVSVIAVPFYRPVV 402

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
                 +     + +++    I  L+ L   L V          L      +  E+    
Sbjct: 403 -----PKPPIYVVYAKYGIAGILLLLLLGILLFVF---------LKTRKKPEVREL---- 444

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
                P  SA    L   +   L    +++ +                   +++ + + N
Sbjct: 445 -----PAVSAAMEALESLETEELREKAKELIT-----------------VDKMIKVTKEN 482

Query: 539 EERFAKILRKWARSE 553
            ++ AKI++ W  S 
Sbjct: 483 PDKVAKIIKHWLSST 497


>gi|89075513|ref|ZP_01161924.1| flagellar M-ring protein [Photobacterium sp. SKA34]
 gi|89048785|gb|EAR54356.1| flagellar M-ring protein [Photobacterium sp. SKA34]
          Length = 582

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 101/553 (18%), Positives = 213/553 (38%), Gaps = 29/553 (5%)

Query: 14  GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73
             +L   R +IL   + + + L +    ++  P    L    E  ++  I     +  I 
Sbjct: 45  LGNLDLLRQVILVLSVAICVALIVLVTMWIKEPEMRPLGS-YETEELIPILDHFDQKKIA 103

Query: 74  FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
           +++  +G++I VP+      ++ L   GL ++ +  G ++  +   FG++  M+      
Sbjct: 104 YQL--DGNTIRVPADEYSAIKLDLTRTGL-NAQTVEGDDILLQDMGFGVSQRMESERLKL 160

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEAI 191
           + E ++AR I+ IS +  A+V +  P    F +     TA+V +   +         ++I
Sbjct: 161 SRERQLARAIEQISQVRKAQVLLATPKQSVFVRHNQEATATVFLTLSSGGSLGQQEVDSI 220

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKAL 249
             +VA AVP L    VTV D  G+LL++   + +     K   + +  +  +   I+  L
Sbjct: 221 VDMVATAVPGLRPTRVTVTDQHGRLLSSGTEDPSTTAKRKEYELERKQEQALREKIDAIL 280

Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309
              LG+ N+ S V   ++    +     YDP +   RS    +D      +Q        
Sbjct: 281 MPVLGLGNYTSQVDVAMDFSALEETRKRYDPSTAATRSEFTLEDINGG--NQVAGIPGAL 338

Query: 310 QNMPHVSDRKV-------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
            N P V                  + +  +E   NYE++T           ++R +++V 
Sbjct: 339 SNQPPVESAIPQNVKDMQSGTNGSDGSVHRESTRNYELDTTISHKRAQTGVIDRQTVSVA 398

Query: 363 VNKGRLTEV-LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           V+   +T+   G        ++ +A+I +++    G    RGD + + S+ F   +   +
Sbjct: 399 VDYKTITDPKTGDVTRVPVSEAEIAKIRRLLMGGIGFLEARGDLLEVLSVPFALPESQLA 458

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR-RLHNIDDAKKGEVGGKSIL 480
             + +      S     +  ALV +V  +++    +  L       D     E G   + 
Sbjct: 459 ADLPIWENPNFSSWVRWIAAALVIIVVIMVLVRPAMRKLLYPNQAPDGTPLDENGMPVMA 518

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
           +       +   L   +   L SS+ D+           N +  +     +  +++   +
Sbjct: 519 NSADSVGLIGAELDGGEGFELSSSSLDLP----------NLHKDEDLLKAVRALVDNEPD 568

Query: 541 RFAKILRKWARSE 553
             A++++ W   +
Sbjct: 569 LAAQVVKSWVNED 581


>gi|332162913|ref|YP_004299490.1| flagellar M-ring protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325667143|gb|ADZ43787.1| Flagellar M-ring protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 541

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 126/565 (22%), Positives = 251/565 (44%), Gaps = 44/565 (7%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +LD++ Q   +   LG+ +  IL     + +   +    + +S  Y  L+   E   V +
Sbjct: 1   MLDKIKQQLPA-IRLGKNQKSILMGAAAILVTGAIIFSLWRSSQGYTALFGSQEHIPVTQ 59

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +   L    I +RI+ +   I V  + +G+ARI LAA+G+ +++  +GYEL D+    G 
Sbjct: 60  VVEVLDGEAIAYRINPDNGQILVAENQLGRARILLAAKGI-TATLPTGYELMDQETMLGS 118

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRAIN 181
           + F+Q +   R+LEGE+A++I +++ +  ARVH+ M +  SF     +  +ASV++R   
Sbjct: 119 SQFIQNVRYKRSLEGELAQSIMALTSVDYARVHLGMSEASSFAISNRSESSASVILRLKY 178

Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQ 235
               K     AI  LVA ++P +   +V V+D  G+LL+    AN      +     +  
Sbjct: 179 GQTLKADQVGAIVQLVAGSIPGMKAANVRVVDQHGELLSEAYQANGKGMTNVKNGAELAH 238

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            +Q   E +I   L++ +G +N+R +V  +L++   +     Y  + +V      S +  
Sbjct: 239 YLQSTTEKSIANLLSSVVGANNYRISVATQLDLSRVEETLERYGAEPRV------SDENI 292

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
           + E    + A+ +  ++ +    +     +     + + Q  Y  +       H  +KLE
Sbjct: 293 QQENGNEDMAMGIPGSLSNQPAAQPKNANAPAAMSRSQAQRKYAYDRDIRHVRHPGFKLE 352

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           ++++AV++NK          A +      L E+ +++  A GI+++RGD++T+  + F  
Sbjct: 353 KMTVAVILNKSA-------PALEKWTPEQLNELKRLIEDAAGIDAKRGDSLTLNMLAFTV 405

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR-RLHNIDD-----A 469
             L +   +   + D  +  +  +    +  +        G+  L  RL   DD     A
Sbjct: 406 PTLIDEPVI-AWWQDATTFRWVEIAGIGLLSLLF---LLFGVRPLMARLSRRDDKHSALA 461

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
               + G ++ +    SSA T  ++P  +               NL  + +    K S  
Sbjct: 462 MAENIDGLNVTNTTSESSATTEPMLPGSSF----------KEDDNLPPQGSGLEIKISH- 510

Query: 530 RLLHMIEINEERFAKILRKWARSEI 554
            L  + +   ER A+++++W  +  
Sbjct: 511 -LQQLAQSETERVAEVIKQWINNNE 534


>gi|163801845|ref|ZP_02195742.1| flagellar M-ring protein [Vibrio sp. AND4]
 gi|159174353|gb|EDP59157.1| flagellar M-ring protein [Vibrio sp. AND4]
          Length = 580

 Score =  335 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 100/554 (18%), Positives = 228/554 (41%), Gaps = 36/554 (6%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
               L R  +L+L+  I V +++ +   F+V  P    L    E  ++  +   L +  I
Sbjct: 47  GDLDLLRQVVLVLSISICVALIVMLF--FWVKEPEMRPLGA-YETEELIPVLDYLDQQKI 103

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
           ++++  +GS++SV SS     ++ +   G+ + ++ +G ++  +   FG++  +++    
Sbjct: 104 NYKL--DGSTVSVESSDYNSIKLGMVRAGV-NQATAAGDDILLQDMGFGVSQRLEQERLK 160

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEA 190
            + E ++A+ I+ +  +  ARV + +P    F +     +ASV +        K    ++
Sbjct: 161 LSRERQLAQAIEEMKQVRKARVLLALPKHSVFVRHNQEASASVSLTISTGVNLKQQEVDS 220

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKA 248
           I  +VA+AVP +    +TV D  G+LL++   +       K   + ++ +  +   I+  
Sbjct: 221 IVDMVASAVPGMKTSRITVTDQHGRLLSSGSQDPASAARRKEQELERSQEQGLREKIDSV 280

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------T 299
           L   LG  N+ + V  +++  T +     +DP++   RS    +D              +
Sbjct: 281 LLPILGFGNYTAQVDIQMDFSTVEQTRKNFDPNTPSTRSEYALEDYNNGNMVAGIPGALS 340

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           +QP +  ++ Q++  + D  +    S+    +KE   N+E++T           L R ++
Sbjct: 341 NQPPADASIPQDVAQMKDGTLTGQGSV----RKESTRNFELDTTISHERKQTGTLARQTV 396

Query: 360 AVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           +V + ++  +    G        +S +  I +++  A G +  RGD + + S+ F E +L
Sbjct: 397 SVAIKDRRVVNPDTGEVTYTPLSESEINAIRQVLIGAVGFDESRGDLLNVLSVKFAEPEL 456

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
                  +      +       +ALV +V  L++      A+++L N     + E+ G  
Sbjct: 457 EQMTDPPIWEHPNFNDWVRWFASALVIIVIILVLV---RPAMKKLLNPASDDEDEMYGPD 513

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
            L           G         +  +     +    +  + +         +  ++   
Sbjct: 514 GLPIGADGETSLIGSDIESGELFEFGSSIDLPNLHKDEDVLKA---------VRALVANE 564

Query: 539 EERFAKILRKWARS 552
            E  A++++ W   
Sbjct: 565 PELAAQVVKNWMNE 578


>gi|323975944|gb|EGB71038.1| flagellar M-ring protein FliF [Escherichia coli TW10509]
          Length = 548

 Score =  335 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 127/564 (22%), Positives = 241/564 (42%), Gaps = 41/564 (7%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L Q    F+   +  +   L+    + V     + +  +  +  Y +LY + E   V++I
Sbjct: 8   LTQAFPAFRLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQI 67

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    + +RI      I VP   + K R+ LAA+G+  +   SGYEL DK    G +
Sbjct: 68  VTVLDGEKLTYRIDPQSGQILVPEDELSKTRMTLAAKGV-QAILPSGYELMDKDEMLGSS 126

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINP 182
            F+Q +   R+LEGE+A++I S+  + +ARVH+ + +  SF      + +ASV++R    
Sbjct: 127 QFVQNVRYKRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYG 186

Query: 183 SVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQA 236
           +        AI HLV+ ++P L    V+V+D  G LLT    A E       K   I++ 
Sbjct: 187 AKLNMDQVNAIVHLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKD 246

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           IQ +   ++   L + +G+ N+R +V+ +L++ T    +  Y    K+ R     +    
Sbjct: 247 IQDKTRASVANVLDSLVGMGNYRVSVMPDLDLSTIDETQEHYGDAPKINR----EESVLD 302

Query: 297 SETSQPE-SAVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHD 350
           S+T+Q          N P ++  ++             +   E + +Y  +       H 
Sbjct: 303 SDTNQVAMGVPGSLSNRPPIAANQMTNGAEENRSPEALSKHSESKRDYSYDRSVQHIQHP 362

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
            + ++RL++AVV+N+          A +        ++  +++ A GI+++RGD +T++ 
Sbjct: 363 GFAVKRLNVAVVLNQNA-------PALKNWKPEQTTQLTALLNNAAGIDAQRGDNLTLSL 415

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           ++F+   +     + +   D       +V+     +   LL   L    +R L     A 
Sbjct: 416 LNFVPQAVPVEPVIPLWKDD-------SVLAWGRLIGCGLLALLLLFFVVRPLMKRLTAV 468

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
           +  V         P   A++   +        + +        +L S+ +    K   L+
Sbjct: 469 RAPV-------ITPEPEAISEPWIAVPEEERKNVDLPSLPGDDSLPSQSSGLEVKLEFLQ 521

Query: 531 LLHMIEINEERFAKILRKWARSEI 554
            L M + +  R A++LR+W  S  
Sbjct: 522 KLAMSDTD--RVAEVLRQWITSNE 543


>gi|327254536|gb|EGE66152.1| flagellar M-ring protein FliF [Escherichia coli STEC_7v]
          Length = 548

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 128/564 (22%), Positives = 241/564 (42%), Gaps = 41/564 (7%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L Q    F+   +  +   L+    + V     + +  +  +  Y +LY + E   V++I
Sbjct: 8   LTQAFPAFRLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQI 67

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    + +RI      I VP   + K R+ LAA+G+  +   SGYEL DK    G +
Sbjct: 68  VTVLDGEKLTYRIDPQSGQILVPEDELSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSS 126

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINP 182
            FMQ +   R+LEGE+A++I S+  + +ARVH+ + +  SF      + +ASV++R    
Sbjct: 127 QFMQNVRYKRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYG 186

Query: 183 SVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQA 236
           +        AI HLV+ ++P L    V+V+D  G LLT    A E       K   I++ 
Sbjct: 187 AKLNMDQVNAIVHLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKD 246

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           IQ +   ++   L + +G  N+R +V+ +L++ T    +  Y    K+ R     +    
Sbjct: 247 IQDKTRASVANVLDSLVGSGNYRVSVMPDLDLSTIDETQEHYGDAPKINR----EESVLD 302

Query: 297 SETSQPE-SAVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHD 350
           S+T+Q          N P ++  ++             +   E + +Y  +       H 
Sbjct: 303 SDTNQVAMGVPGSLSNRPPIAANQMTNGAEENRSPEALSKHSESKRDYSYDRSVQHIQHP 362

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
            + ++RL++AVV+N+          A +        ++  +++ A GI+++RGD +T++ 
Sbjct: 363 GFAVKRLNVAVVLNQNA-------PALKNWKPEQTTQLTALLNNAAGIDAQRGDNLTLSL 415

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           ++F+   +     + +   D       +V+  +  +   LL   L    +R L     A 
Sbjct: 416 LNFVPQAVPVEPVIPLWKDD-------SVLAWVRLIGCGLLALLLLFFVVRPLMKRLTAV 468

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
           +  V         P   A++   +        + +        +L S+ +    K   L+
Sbjct: 469 RAPV-------ITPEPEAISEPWIAVPEEERKNVDLPSLPGDDSLPSQSSGLEVKLEFLQ 521

Query: 531 LLHMIEINEERFAKILRKWARSEI 554
            L M + +  R A++LR+W  S  
Sbjct: 522 KLAMSDTD--RVAEVLRQWITSNE 543


>gi|255264100|ref|ZP_05343442.1| flagellar M-ring protein FliF [Thalassiobium sp. R2A62]
 gi|255106435|gb|EET49109.1| flagellar M-ring protein FliF [Thalassiobium sp. R2A62]
          Length = 531

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 136/550 (24%), Positives = 241/550 (43%), Gaps = 28/550 (5%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +  ++  +K   SLG    +I     +   +  +      ++P Y  LY  LE S    +
Sbjct: 1   MQNIISVWK---SLGARNQIISGLASVAVFLAVLFMTRVASTPTYALLYSGLESSASGEV 57

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
             +L   +  + I   G SI V S+   + R+ LA+ GLP  +   GYEL D +  FG T
Sbjct: 58  IASLEAQSAAYEIR--GDSIFVDSAKRDQLRMTLASAGLPKPTVQ-GYELLDTLTGFGTT 114

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-INP 182
           S M +    RA EGE+ARTI +   I  ARVHI       F++  A  TASV +   +  
Sbjct: 115 SQMFDAAYWRAKEGELARTIVATPAIRTARVHISNGTSRPFQRNQA-TTASVTVNTGVAG 173

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242
              +  +A+++LVA+AV  +   DV ++D    L++   +  +   ++          I+
Sbjct: 174 LTTQQIKALQYLVASAVAQMSPEDVAIIDDQRGLVSGAGLASDPTTRTSETE-----NIK 228

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
            NI + L A +G  N    +  +   D + I E   DP+S+V  S    ++   S T Q 
Sbjct: 229 RNIERLLEARVGFGNAVVELNVQRTTDIETILERRVDPNSRVAISTET-EERSTSSTDQN 287

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
             +VTV  N+P   D       S     +  E+ N+E++      T    +++R+++AV+
Sbjct: 288 GGSVTVASNLPD-GDAAADSGTSNSQNSESRERVNFEMSETQREVTRGPGQVQRITVAVL 346

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           V+     +  G +  + + +  LA++ ++V++A G +  RGD ITI S+ F    L   G
Sbjct: 347 VDGVNGLDSDGNTTIEPRSEEELADLRELVASAIGFDENRGDKITIRSLAF--EPLPVEG 404

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482
           TV  S  ++       +++ +   V   +   LGL  +R +     A +  +   S    
Sbjct: 405 TVAGSSKNLF--DSLNLMSLIQIAVAASVAIVLGLFVVRPVLMSGRAYRPALIDDSGP-- 460

Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542
                 +  G + + ++ L ++      +        +  +     +RL  +IE  +E  
Sbjct: 461 ------LLDGEI-DTSLGLSATEIGEMKNVDGAVQVADPSMPNDPVVRLRALIEERQEET 513

Query: 543 AKILRKWARS 552
             ILR W  +
Sbjct: 514 VDILRDWIAA 523


>gi|258404702|ref|YP_003197444.1| flagellar M-ring protein FliF [Desulfohalobium retbaense DSM 5692]
 gi|257796929|gb|ACV67866.1| flagellar M-ring protein FliF [Desulfohalobium retbaense DSM 5692]
          Length = 504

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 117/467 (25%), Positives = 210/467 (44%), Gaps = 29/467 (6%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
              +      R R L L  V L+ + +F           Y  LY  +   + + +   L 
Sbjct: 17  SLIQRIQDWPRRRKLSLLVVGLLCVAVFTFLILQARVADYQLLYADMTQQEASSVVDWLQ 76

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
           ++N+ +++ D GSSI VP+  V K R+ LA  GLP      G+E+FD+   FG+T F Q+
Sbjct: 77  DSNVSYQLRDQGSSIYVPAGQVYKTRLDLAGDGLPQ-GQGVGFEIFDQ-QRFGVTQFTQQ 134

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--AINPSVYK 186
           +   RAL+GE+AR++ +++ + +ARVH+V+P+    R+   +  ASV++           
Sbjct: 135 VNYQRALQGELARSVATLTSVQSARVHLVLPERQFLREQQEKAKASVVVEFAPGQGLDSN 194

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEM 243
             + I  LV+ +V  +   +VTV+DS G +L+  E E +   I  + L   QA++ + E 
Sbjct: 195 QIKGIIRLVSGSVEGMAANNVTVVDSQGNVLSGGEEEDSGSPISPEKLEYKQAVEGQYEQ 254

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
                L    G +     V A ++  ++   E +YDPDS V RS + S+           
Sbjct: 255 RAQALLDRVFGPNKALVRVTAAIDFVSKHTTEELYDPDSIVPRSEKTSE----------- 303

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
                  N    +  +       + + +  E  NYEI+      T     ++ LS+AV+V
Sbjct: 304 ------SNSGTTAREETEGNAGGQRSSESTETVNYEISRTVNEITKTMGGVKNLSVAVLV 357

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
            +  L       A +G     +  + ++VS+A G+   RGD+I + +M   E    +SGT
Sbjct: 358 GQQFLQNKGNGGAAEGHS---VESLQRLVSSALGLQPDRGDSIEVVAMPVQEQAGLSSGT 414

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
              +   +    +   +   +  +G +L  FL +  + +    +  +
Sbjct: 415 SANAGFSL--YDYLPFVKYGLIALGFILAYFLLVRPVLQTFRSEVTE 459


>gi|293408353|ref|ZP_06652192.1| flagellar M-ring protein FliF [Escherichia coli B354]
 gi|291471531|gb|EFF14014.1| flagellar M-ring protein FliF [Escherichia coli B354]
          Length = 548

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 130/564 (23%), Positives = 246/564 (43%), Gaps = 41/564 (7%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L Q    F+   +  +   L+    + V     + +  +  +  Y +LY + E   V++I
Sbjct: 8   LTQAFPAFRLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQI 67

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    + +RI      I VP   + K R+ LAA+G+  +   SGYEL DK    G +
Sbjct: 68  VTVLDGEKLSYRIDPQSGQILVPEDELSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSS 126

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINP 182
            F+Q +   R+LEGE+A++I S+  + +ARVH+ + +  SF      + +ASV++R    
Sbjct: 127 QFVQNVRYKRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYG 186

Query: 183 SVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQA 236
           +        AI HLV+ ++P L    V+V+D  G LLT    A E       K   I++ 
Sbjct: 187 AKLNMDQVNAIVHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKD 246

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           IQ +   ++   L + +G  N+R +V+ +L++ T    +  Y    K+ R     ++   
Sbjct: 247 IQDKTRASVANVLDSLVGSGNYRVSVMPDLDLSTIDETQEHYGDAPKINR----EENVLD 302

Query: 297 SETSQPE-SAVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHD 350
           S+T+Q          N P V+  ++             +   E + +Y  +       H 
Sbjct: 303 SDTNQVAMGVPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHP 362

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
            + ++RL++AVV+N+          A +        ++  +++ A GI+ +RGD +T++ 
Sbjct: 363 GFAVKRLNVAVVLNQNA-------PALKNWKPEQTTQLTALLNNAAGIDVQRGDNLTLSL 415

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           ++F+         + +   D +    A V      L+  LL+ F+    ++RL  +    
Sbjct: 416 LNFVPQVAPVEPVIPLWKDDCV---LAWVRLIGCGLLALLLLFFVVRPVMKRLTAVRAP- 471

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
                   +++P P + +     MP +     + +        +L S+ +    K   L+
Sbjct: 472 --------VITPEPEAVSEPWIAMPEEE--RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQ 521

Query: 531 LLHMIEINEERFAKILRKWARSEI 554
            L M + +  R A++LR+W  S  
Sbjct: 522 KLAMSDTD--RVAEVLRQWITSNE 543


>gi|260574387|ref|ZP_05842391.1| flagellar M-ring protein FliF [Rhodobacter sp. SW2]
 gi|259023283|gb|EEW26575.1| flagellar M-ring protein FliF [Rhodobacter sp. SW2]
          Length = 533

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 137/555 (24%), Positives = 240/555 (43%), Gaps = 27/555 (4%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +  L   + +  +  R RI+++ + I + + +   +R   N+P    LY  L+      +
Sbjct: 1   MQNLFSLWSALDA--RRRIIVIGATIAMFLAVLGLSRM-ANTPSMALLYAGLDNRAAGEV 57

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
             AL +  + + +   G SI V  +     R+ LA +GLP+  + +GYEL D ++ FG T
Sbjct: 58  VAALDQRGVAYEVK--GDSILVDVTQRDSLRMTLATEGLPTMGA-AGYELLDGLSGFGTT 114

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
           S M +    RA EGE+ARTI +   I AARVHI       FR+      +  +       
Sbjct: 115 SQMFDAAYWRAKEGELARTILANPQIRAARVHIAQAPAQPFRRDVLATASVTVTTTTGSL 174

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEM 243
               A+A++HL+AAAV  +   DV+V+D+ G L+ A +             Q    E+  
Sbjct: 175 PPLQAKALKHLIAAAVAGMQPEDVSVIDTVGGLIMAADDNTLTGNGG----QDRAAELRT 230

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           N+ + LAA +G       V  ++  + + I E  +DP  +V  S   ++    S  ++P 
Sbjct: 231 NVERLLAARVGPGKSVVEVSVDVVTERESITERKFDPQGRVPISTDATEKT--SSATEPS 288

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
             VTV  N+P               T +  E +N+E++  S         + +LS+AV+V
Sbjct: 289 GDVTVASNLPQ--GNAAAGGNGQSQTSETRELTNFEVSETSRELLRVPGAVRKLSVAVLV 346

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           +  ++T   G  + Q + +  LA + ++V++A G++  RGD +T+ S+ F       +  
Sbjct: 347 DGLQVTAADGTISWQPRPEEELAVLRELVASAVGLDETRGDVLTLKSLAFEPLAEAGTLA 406

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNIDDAKKGEVGGKSILSP 482
               F DI      ++I   V  V  L++    +   L  L        G     ++ + 
Sbjct: 407 EASMFADIGPIDLMSMIQLAVLAVVALVLGLFVIRPVLTNLPRRMAELPGPGAQLALPNG 466

Query: 483 PPISSAVTTGLMPNDNIALD--SSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
               + V TG + +D   L       D+     +    ++         RL  +IE  + 
Sbjct: 467 AGGENRVLTGEI-DDGFTLPTMGFGDDVAEDEADANDPMS---------RLRRLIEERQA 516

Query: 541 RFAKILRKWARSEIE 555
              +ILR W  +E E
Sbjct: 517 ESVEILRGWMETEEE 531


>gi|330445366|ref|ZP_08309018.1| flagellar M-ring protein FliF [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489557|dbj|GAA03515.1| flagellar M-ring protein FliF [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 582

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 100/553 (18%), Positives = 214/553 (38%), Gaps = 29/553 (5%)

Query: 14  GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73
             +L   R +IL   + + + L +    ++  P    L    E  ++  I     +  I+
Sbjct: 45  LGNLDLLRQVILVLSVAICVALIVLVTMWIKEPEMRPLGT-YETEELIPILDHFDQKKIE 103

Query: 74  FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
           +++  +G++I VP+      ++ L   GL ++ +  G ++  +   FG++  ++      
Sbjct: 104 YQL--DGNTIRVPAEEYSAIKLDLTRSGL-NTRTVEGDDILLQDMGFGVSQRLESERLKL 160

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEAI 191
           + E ++AR I+ IS +  A+V +  P    F +     TA+V +   +         ++I
Sbjct: 161 SRERQLARAIEQISQVRKAQVLLATPKQSVFVRHNQEATATVFLTLSSGGSLGQQEVDSI 220

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKAL 249
             +VA AVP L    VTV D  G+LL++   + +     K   + +  +  +   I+  L
Sbjct: 221 VDMVATAVPGLRPTRVTVTDQHGRLLSSGTEDPSATAKRKEYELERKQEQSLREKIDAIL 280

Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309
              LG+ N+ S V   ++    +     YDP +   RS    +D     T          
Sbjct: 281 MPVLGLGNYTSQVDVAMDFSALEETRKRYDPATAATRSEFTLEDINGGNT--VSGIPGAL 338

Query: 310 QNMPHVSDRKV-------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
            N P V                  + +  +E   NYE++T           + R +++V 
Sbjct: 339 SNQPPVDSAIPQNVKDMQSGSGGADGSVHRESTRNYELDTTISHKRAQTGTIARQTVSVA 398

Query: 363 VNKGRLTE-VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           V+   +T+   G        ++ +A+I +++    G +  RGD + + S+ F   +   +
Sbjct: 399 VDYKTITDPATGDVTRVPVSEAEIAKIRRLLMGGIGFSEARGDLLEVLSVPFALPESQVA 458

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR-RLHNIDDAKKGEVGGKSIL 480
             + +      +     V  ALV +V  +++    +  L       D     E G   + 
Sbjct: 459 ADLPIWENPNFNNWVRWVAAALVIIVVIMVLVRPAMRKLLYPNQAPDGTPLDENGMPILA 518

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
           +       +   L   +   L SS+ D+ +  R+          +     +  +++   +
Sbjct: 519 NTTDSVGLIGAELDGGEGFELSSSSLDLPNLHRD----------EDLLKAVRALVDNEPD 568

Query: 541 RFAKILRKWARSE 553
             A++++ W   +
Sbjct: 569 LAAQVVKSWVNED 581


>gi|326389483|ref|ZP_08211050.1| flagellar M-ring protein FliF [Thermoanaerobacter ethanolicus JW
           200]
 gi|325994488|gb|EGD52913.1| flagellar M-ring protein FliF [Thermoanaerobacter ethanolicus JW
           200]
          Length = 506

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 119/567 (20%), Positives = 228/567 (40%), Gaps = 82/567 (14%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
              +QL  F+       + ++ I+A ++ + I L +   + VN P+Y  LY  L + D  
Sbjct: 7   NFREQLTNFWNKFDKKQKIQLGIIAILLFIGISLLV---YIVNRPNYVVLYSDLSIKDAG 63

Query: 62  RISVALSEA-NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK-VNS 119
            +   L     I ++IS++G++I VP+    + R+ LA +G+P      G+   D   NS
Sbjct: 64  AVVEKLKTEFKIPYKISNDGTTILVPAQYKDEVRMKLATEGIPQG----GFSFQDAMNNS 119

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARPTASVMI 177
              T   +    +  L+ EI  ++++I G+  A V+IV+PD  +F       + TA+VM+
Sbjct: 120 LATTDQERRQKYLYFLQNEIQNSLKTIDGVQDAIVNIVVPDQNAFVLSNTTNQATAAVML 179

Query: 178 RAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIV 234
                        + I   V+ +V  L   +VTV+D+ GK+LTA ++          ++ 
Sbjct: 180 TLKPGVTLSSSQVKGIIDFVSKSVEGLKPENVTVIDNNGKILTAESDTTAENANTQFALQ 239

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIR 289
           + +Q +++ ++   L    G  N        LN D +    I Y P     +  + RSI+
Sbjct: 240 KKVQEDLQNSLQTLLEQMFGPGNVVVRANVTLNFDKKTQDTIEYLPVQGNDNKGIVRSIQ 299

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
             K+  ++  +Q  S+     N P V+           +  + E   NYEIN    +   
Sbjct: 300 ELKE--KATGTQGGSSPGTASNNPPVAST---TGNGTSDYSRTETTINYEINQIKTSLVQ 354

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT---I 406
              K+E +S+AVVVN             Q   +S   +I  +V+ A G     GD+   +
Sbjct: 355 AQGKIESISVAVVVN-------------QNLNNSMKQQIADLVTKAAG-----GDSLVKV 396

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
           ++  + F ++ L  +   Q      +  +   ++ ALV   G  L+    +   ++  ++
Sbjct: 397 SVQGIQFNQD-LLKTMQQQAKVSKGVPVYVWAILAALVLGGGLFLI---MMRRKKKETSL 452

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
             A++  +     + P                                    I+     +
Sbjct: 453 TTAEQEVLATVEPIEP---------------------------------IEEIDFSEKDE 479

Query: 527 SDLRLLHMIEINEERFAKILRKWARSE 553
              ++  +I+   E   +++R W   E
Sbjct: 480 KKKQIERLIKEKPELVVQVIRTWLNEE 506


>gi|59889767|emb|CAH19122.1| Lateral flagellar M-ring protein (FliF-like) [Escherichia coli]
 gi|284920031|emb|CBG33087.1| lateral flagellar M-ring protein (FliF-like) [Escherichia coli 042]
          Length = 548

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 131/564 (23%), Positives = 248/564 (43%), Gaps = 41/564 (7%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L Q    F+   +  +   L+    + V     + +  +  +  Y +LY + E   V++I
Sbjct: 8   LTQAFPAFRLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQI 67

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    + +RI      I VP   + K R+ LAA+G+  +   SGYEL DK    G +
Sbjct: 68  VTVLDGEKLSYRIDPQSGQILVPEDALSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSS 126

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINP 182
            F+Q +   R+LEGE+A++I S+  + +ARVH+ + +  SF      + +ASV++R    
Sbjct: 127 QFVQNVRYKRSLEGELAQSIMSLDSVESARVHLALNEESSFVVSDEPQNSASVVVRLHYG 186

Query: 183 SVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQA 236
           +        AI HLV+ ++P L    V+V+D  G LLT    A E       K   I++ 
Sbjct: 187 AKLNMDQVNAIVHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKD 246

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           IQ +   ++   L + +G  N+R +V+ +L++ T    +  Y    K+ R     ++   
Sbjct: 247 IQDKTRASVANVLDSLVGTGNYRVSVMPDLDLSTIDETQEHYGDAPKINR----EENVLD 302

Query: 297 SETSQPE-SAVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHD 350
           S+T+Q          N P V+  ++             +   E + +Y  +       H 
Sbjct: 303 SDTNQVAMGVPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHP 362

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
            + ++RL++AVV+N+          A +       A++  +++ A GI+ +RGD +T++ 
Sbjct: 363 GFAVKRLNVAVVLNQNA-------PAMKNWKPEQTAQLTALLNNAAGIDVQRGDNLTLSL 415

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           ++F+   +     + +   D +    A V      L+  LL+ F+    ++RL  +    
Sbjct: 416 LNFVPQAVPVEPIIPLWKDDSV---LAWVRLIGCGLLALLLLFFVVRPVMKRLTAVRAP- 471

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
                   +++P P + +     MP +     + +        +L S+ +    K   L+
Sbjct: 472 --------VITPEPEAVSEPWIAMPEEE--RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQ 521

Query: 531 LLHMIEINEERFAKILRKWARSEI 554
            L M + +  R A++LR+W  S  
Sbjct: 522 KLAMSDTD--RVAEVLRQWITSNE 543


>gi|59712459|ref|YP_205235.1| flagellar MS-ring protein [Vibrio fischeri ES114]
 gi|59480560|gb|AAW86347.1| flagellar M ring protein FliF [Vibrio fischeri ES114]
          Length = 577

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 104/552 (18%), Positives = 216/552 (39%), Gaps = 36/552 (6%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
               L R  IL+L+  I V +++ +   F+V  P    L V  E  ++ ++   L     
Sbjct: 48  GNLDLLRQVILVLSVSICVALIVMLF--FWVQEPEMRPLGV-YETDELIQVLDHLDAQKA 104

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
           ++++  +G++I VP+S   K  + L+  GL + +   G ++  +   FG++  +++    
Sbjct: 105 EYKL--DGNTILVPASEFSKMNLDLSRAGL-NKAVGEGDDILLQDMGFGVSQRLEQERLK 161

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEA 190
            + E ++A T + +  I  A+V + MP    F +     +A+V +     ++ K    ++
Sbjct: 162 LSRERQLASTFEQMRPIRKAQVLLAMPKQSVFVRHNQEASATVFLTMRMGAMLKQEEVDS 221

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKA 248
           I  +VA+AVP +    VTV D  G+LL++   +   +   K   + +  +  +   I+  
Sbjct: 222 IVDMVASAVPGMKPTRVTVTDQHGRLLSSGTQDPMAMAHRKEQELERKQEQSLRDKIDAI 281

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308
           L   LG+ N+ + V   ++    +     +DP +   RS    +D      +        
Sbjct: 282 LIPILGLGNYTAQVDVSMDFSAVEQTRKQFDPQTPSTRSEYTLEDYNNG--NVIAGVPGA 339

Query: 309 EQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
             N P V                  + +  KE   N+E++T           + R +++V
Sbjct: 340 LSNQPPVDSAIPQDIAELKDGSVLGQGSVHKEATRNFELDTTISHERKQTGTVARQTVSV 399

Query: 362 VV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
            V  +  +    G         + L +I +I+  + G+N +RGD + + S+ F   +   
Sbjct: 400 AVKERQSVNPETGEVTYTPISAAELDKIRQIIIGSVGLNEQRGDLLNVLSVKFAIEEQPI 459

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
           +  V +      +     +  ALV +   L+   L   A+ +L   + A+   +      
Sbjct: 460 AIDVPIWENPNFNDWVKWLAGALVIIAVILV---LVRPAMNKLLFPNQAEDEALAN---- 512

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
                +     G M      LD    +  S         N +  +     +  ++    E
Sbjct: 513 -----AERNAEGEMGLIGSDLDGDGFEFGSG----IDLPNLHKDEDLLKAVRALVANEPE 563

Query: 541 RFAKILRKWARS 552
             A+++R W   
Sbjct: 564 LAAQVVRNWVSE 575


>gi|163732487|ref|ZP_02139932.1| flagellar M-ring protein FliF, putative [Roseobacter litoralis Och
           149]
 gi|161393847|gb|EDQ18171.1| flagellar M-ring protein FliF, putative [Roseobacter litoralis Och
           149]
          Length = 504

 Score =  333 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 138/518 (26%), Positives = 226/518 (43%), Gaps = 20/518 (3%)

Query: 43  VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL 102
             +P+   LY  LE      +  AL +    F +   G SI V SS   + R+ LA++GL
Sbjct: 2   ATAPNMTLLYAGLENGAAGDVVTALEQRGAVFEVR--GGSIFVDSSQRDELRMTLASEGL 59

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162
           P++S+  GYEL D ++ FG TS M +    RA EGE+ARTI S   I  ARVHI      
Sbjct: 60  PANSTR-GYELLDTLSGFGTTSQMFDAAYWRAKEGELARTIVSSPHIAMARVHIASTGSN 118

Query: 163 SFRKIGARPTASVMIRAINPS-VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE 221
            F++ G  P AS+ +     +   +  +AIR LV++AV  L   DV V+D+ G L+   +
Sbjct: 119 PFQR-GVTPKASISVTPSGAAITPQQGKAIRFLVSSAVAGLASEDVAVIDANGALIGNAD 177

Query: 222 MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD 281
                +G            ++  + + L A +G  N    V  +   +++ IRE  +DP+
Sbjct: 178 EVAPTIGGEDKA-----DVLKARVQRLLEARVGFGNSVVEVSVDTVTESESIRERTFDPE 232

Query: 282 SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEIN 341
           S+V  S    ++   S +      VTV  N+P   +       S    ++  E+ NYE++
Sbjct: 233 SRVAISTDT-EERNTSSSEAGGGDVTVASNLPD--EDGAGGENSSSQNNETRERVNYEVS 289

Query: 342 TKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR 401
                   +   ++R+++AV+VN+  LT+  G      + ++ L  +  +V++A G +  
Sbjct: 290 ETEREVLREPGAIKRVTVAVLVNEMTLTDEAGEQTVAPRDENELEALRDLVASAVGFDEA 349

Query: 402 RGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461
           RGD ITI SM      L  +         ++S     V++A+   +  L+   LGL  +R
Sbjct: 350 RGDIITIKSMGLQSVPLQGTAAG----TSLMSNFNIDVMSAVQMAILALVTLILGLFVVR 405

Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN--QDIFSHSRNLQS-R 518
            L + +             +          G +  D+  L       D       L    
Sbjct: 406 PLLSRNGLNDAPAIAALPAAEGQTDGQGLDGEIDGDDFQLPDLPVISDFGDAGGELPDLN 465

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIED 556
           I S +S     RL  MI   ++   +ILR W   + E 
Sbjct: 466 IGSGMSDDPVDRLRTMIGERQDETVEILRSWLEDKEES 503


>gi|88597235|ref|ZP_01100470.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|88190296|gb|EAQ94270.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni
           84-25]
          Length = 560

 Score =  333 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 120/566 (21%), Positives = 231/566 (40%), Gaps = 28/566 (4%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEV 57
            +L Q+ Q +++ T   + RI+I AS+I+V   L   A F  +  +    Y  L   +  
Sbjct: 5   NMLHQIGQLYQNLTR--KQRIVIAASIIVVVGFLVFLALFHGSGSNANNGYAVLVENVSP 62

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
           S    I   L + NI +++    + I VP   V + R+ +A++GL   S   G+E FD  
Sbjct: 63  SSSAAIVAKLEQNNIPYKLESE-NKILVPQDQVYRQRMFIASEGLIKDSR-VGFEAFD-T 119

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
            +FG T+  Q++   RA+EGE+ARTI+++  I +A VHI  P    F +    PTASV++
Sbjct: 120 QAFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASVVV 179

Query: 178 RAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIV 234
                     K  + I+++V+AAVP L   +V + D +G  L   E  E +++   +   
Sbjct: 180 NVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIKFK 239

Query: 235 QAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293
              +  +E  I + LA F  G+D  + +V  + +   Q+ +  +YDP+  V     L+++
Sbjct: 240 SDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLNEE 299

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
               +  + +       N+  V    +     ++   K +  +N E++     T      
Sbjct: 300 RTGRKDPEIQGVPGAVSNIGPV--EGLDNKGQIDTYKKNQVTTNNELSKTITNTKKQFAT 357

Query: 354 LERLSIAVVVNKGRL----TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
           + R S AV ++             +S         LA +  IV      ++ RGD++ + 
Sbjct: 358 VLRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEELASVESIVKNTINFSATRGDSVVVQ 417

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
           ++ F    +     V+       +R     I  + + +  +L+       +         
Sbjct: 418 NLPFHRESIRVESKVKT----FYNRFVEPFIPPVKYFIAAILLFIFYKKVIAPFTQKML- 472

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
            +     + +   P          +   N A     + +       +  I   V  +   
Sbjct: 473 -EDVAAQEEMQQGPNAVLDDAEDALEKFNAARKKVEEQLGFGDNFNEDSIQYEVLLE--- 528

Query: 530 RLLHMIEINEERFAKILRKWARSEIE 555
           +L  ++    E  A +L+   +++ E
Sbjct: 529 KLRGLVSDKGEEIAALLQNLIQNDSE 554


>gi|229896276|ref|ZP_04511446.1| Flagellar M-ring protein fliF [Yersinia pestis Pestoides A]
 gi|229701199|gb|EEO89228.1| Flagellar M-ring protein fliF [Yersinia pestis Pestoides A]
          Length = 475

 Score =  333 bits (855), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 106/486 (21%), Positives = 199/486 (40%), Gaps = 60/486 (12%)

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
                 G+EL D+   FG++ F ++I   RALEGE++RTI ++  ++  RVH+ MP    
Sbjct: 13  RKVGAVGFELLDQE-KFGISQFSEQINYQRALEGELSRTIGTLGPVLNVRVHLAMPKPSL 71

Query: 164 FRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE 221
           F +    PTASV +              AI ++V+++V  L  G+VTV+D TG+LLT ++
Sbjct: 72  FVREQKSPTASVTLALQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLLTQSD 131

Query: 222 -MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP 280
              R++    L     +++  +  I   LA  +G  N  + V A+++  +++  +  Y P
Sbjct: 132 SAGRDLNASQLKFTSEVENRYQRRIENILAPMVGNGNVHAQVTAQVDFASREQTDEEYKP 191

Query: 281 ----DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV---PLP---------- 323
               +    RS ++S   Q   T+          N P V+       P P          
Sbjct: 192 NQAANQGAVRSQQVSTSEQLGGTNV-GGVPGALSNQPPVAPIAPIEIPQPAGAAANNAAP 250

Query: 324 ----------------RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367
                           ++  +  + ++ +N+E++     T      ++RLS+AVVVN   
Sbjct: 251 ANTAATANANTTATAAKASSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVNYTS 310

Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVS 427
                            LA++  +   A G ++ RGDT+ + +  F  +      ++   
Sbjct: 311 DKAGK----PIALSKDQLAQVESLTREAMGFSTVRGDTLNVVNTPFTASDDTRGSSLPFW 366

Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISS 487
                   F  ++NA  +L+  L+   L    LR +         +    S+ +    + 
Sbjct: 367 QQQSF---FDQLLNAGRYLLILLVAWILWRKLLRPMLAKKQV--ADKAAASVNNIVQTAQ 421

Query: 488 AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILR 547
           A  T     + +AL   N          Q R+++ V  Q   R+  + + +    A ++R
Sbjct: 422 AAETVKQSKEELALRKKN----------QQRVSAEVQAQ---RIRELADKDPRVVALVIR 468

Query: 548 KWARSE 553
           +W  ++
Sbjct: 469 QWMSND 474


>gi|170682472|ref|YP_001742357.1| flagellar MS-ring protein [Escherichia coli SMS-3-5]
 gi|170520190|gb|ACB18368.1| lateral flagellar M-ring protein LfiF [Escherichia coli SMS-3-5]
          Length = 548

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 128/564 (22%), Positives = 246/564 (43%), Gaps = 41/564 (7%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L Q    F+   +  +   L+    + V     + +  +  +  Y +LY + E   V++I
Sbjct: 8   LTQAFPAFRLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQI 67

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    + +RI      I VP   + K R+ LAA+G+  +   SGYEL DK    G +
Sbjct: 68  VTVLDGEKLSYRIDPQSGQILVPEDELSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSS 126

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINP 182
            F+Q +   R+LEGE+A++I S+  + +ARVH+ + +  SF      + +ASV++R    
Sbjct: 127 QFVQNVRYKRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYG 186

Query: 183 SVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQA 236
           +        AI HLV+ ++P L    V+V+D  G LLT    A E       K   I++ 
Sbjct: 187 AKLNMDQVNAIVHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKD 246

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           IQ +   ++   L + +G  N+R +V+ +L++      +  Y    K+ R     ++   
Sbjct: 247 IQDKTRASVANVLDSLVGSGNYRVSVMPDLDLSNIDETQEHYGDAPKINR----EENVLD 302

Query: 297 SETSQPE-SAVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHD 350
           S+T+Q          N P ++  ++             +   E + +Y  +       H 
Sbjct: 303 SDTNQVAMGVPGSLSNRPPIAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHP 362

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
            + ++RL++AVV+N+          A +        ++  +++ A GI+ +RGD +T++ 
Sbjct: 363 GFAVKRLNVAVVLNQNA-------PALKNWKPEQTTQLTALLNNAAGIDVQRGDNLTLSL 415

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           ++F+   +     + +   D +    A V      L+  LL+ F+    ++RL  +    
Sbjct: 416 LNFVPQAVPVEPIIPLWKDDSV---LAWVRLIGCGLLALLLLFFVVRPVMKRLTAVRAP- 471

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
                   +++P P + +     MP +     + +        +L S+ +    K   L+
Sbjct: 472 --------VITPEPEAVSEPWIAMPEEE--RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQ 521

Query: 531 LLHMIEINEERFAKILRKWARSEI 554
            L M + +  R A++LR+W  S  
Sbjct: 522 KLAMSDTD--RVAEVLRQWITSNE 543


>gi|197334317|ref|YP_002156678.1| flagellar M-ring protein FliF [Vibrio fischeri MJ11]
 gi|197315807|gb|ACH65254.1| flagellar M-ring protein FliF [Vibrio fischeri MJ11]
          Length = 577

 Score =  333 bits (854), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 103/552 (18%), Positives = 216/552 (39%), Gaps = 36/552 (6%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
               L R  IL+L+  I V +++ +   F+V  P    L V  E  ++ ++   L     
Sbjct: 48  GNLDLLRQVILVLSVSICVALIVMLF--FWVQEPEMRPLGV-YETDELIQVLDHLDAQKA 104

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
           ++++  +G++I VP+S   K  + L+  GL + +   G ++  +   FG++  +++    
Sbjct: 105 EYKL--DGNTILVPASEFSKMNLDLSRAGL-NKAVGEGDDILLQDMGFGVSQRLEQERLK 161

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEA 190
            + E ++A T + +  I  A+V + MP    F +     +A+V +     ++ K    ++
Sbjct: 162 LSRERQLASTFEQMRPIRKAQVLLAMPKQSVFVRHNQEASATVFLTMRMGAMLKQEEVDS 221

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKA 248
           I  +VA+AVP +    VTV D  G+LL++   +   +   K   + +  +  +   I+  
Sbjct: 222 IVDMVASAVPGMKPTRVTVTDQHGRLLSSGTQDPMAMAHRKEQELERKQEQSLRDKIDAI 281

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308
           L   LG+ N+ + V   ++    +     +DP +   RS    +D      +        
Sbjct: 282 LIPILGLGNYTAQVDVSMDFSAVEQTRKQFDPQTPSTRSEYTLEDYNNG--NVIAGVPGA 339

Query: 309 EQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
             N P V                  + +  KE   N+E++T           + R +++V
Sbjct: 340 LSNQPPVDSAIPQDIAELKDGSVLGQGSVHKEATRNFELDTTISHERKQTGTVARQTVSV 399

Query: 362 VV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
            +  +  +    G         + L +I +I+  + G+N +RGD + + S+ F   +   
Sbjct: 400 AIKERQSVNPETGEVTYTPISAAELDKIRQIIIGSVGLNEQRGDLLNVLSVKFAIEEQPI 459

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
           +  V +      +     +  ALV +   L+   L   A+ +L   + A+   +      
Sbjct: 460 AIDVPIWENPNFNDWVKWLAGALVIIAVILV---LVRPAMNKLLFPNQAEDEALAN---- 512

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
                +     G M      LD    +  S         N +  +     +  ++    E
Sbjct: 513 -----AERNAEGEMGLIGSDLDGDGFEFGSG----IDLPNLHKDEDLLKAVRALVANEPE 563

Query: 541 RFAKILRKWARS 552
             A+++R W   
Sbjct: 564 LAAQVVRNWVSE 575


>gi|258621104|ref|ZP_05716138.1| flagellar M-ring protein [Vibrio mimicus VM573]
 gi|258626177|ref|ZP_05721025.1| flagellar M-ring protein [Vibrio mimicus VM603]
 gi|262170880|ref|ZP_06038558.1| flagellar M-ring protein FliF [Vibrio mimicus MB-451]
 gi|258581532|gb|EEW06433.1| flagellar M-ring protein [Vibrio mimicus VM603]
 gi|258586492|gb|EEW11207.1| flagellar M-ring protein [Vibrio mimicus VM573]
 gi|261891956|gb|EEY37942.1| flagellar M-ring protein FliF [Vibrio mimicus MB-451]
          Length = 579

 Score =  333 bits (854), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 115/559 (20%), Positives = 236/559 (42%), Gaps = 36/559 (6%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           + F      L R  +L+L+  I V +++ +   F+V  P    L    E  ++  +   L
Sbjct: 42  MDFTVGDLDLLRQVVLVLSISICVALIVMLF--FWVREPDMRPLGA-YETEELIPVLDYL 98

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
            +    +++  +G++I VP S     ++ +   GL +    +G E+  +   FG++  ++
Sbjct: 99  DQQKQQYKL--DGNTILVPVSDYNSLKLSMVRAGL-NQERQAGDEILMQDMGFGVSQRLE 155

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187
           +     + E ++A+ I+ +  I  ARV + +P    F +     +ASV +     +  K 
Sbjct: 156 QERLKLSRERQLAKAIEEMRQINKARVLLALPKQSVFVRQNQEASASVFLSLRTGANLKQ 215

Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE--IEM 243
              +A+  +VA+AVP +    VTV D  G+LL++   +     +        Q E  +  
Sbjct: 216 EEIDAVVDMVASAVPGMKPSRVTVTDQHGRLLSSGSQDPVSAARRKEQELEKQQEEALRG 275

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE----- 298
            I+  L   LG+ N+ + V  EL+    +    V+DP++   RS    +D          
Sbjct: 276 KIDSVLIPILGLGNYTAQVDIELDFSAVEQTRKVFDPNTPATRSEYTLEDYNNGNVVAGV 335

Query: 299 ----TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
               ++QP +  ++ Q++  + D  V    S+     KE   N+E++T        +  +
Sbjct: 336 PGALSNQPPADASIPQDVAQMKDGSVMGQGSV----HKEATRNFELDTTISHERKQSGVV 391

Query: 355 ERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
            R ++AV V ++  +    G        ++ L  I +I+    G +  RGD + + SM F
Sbjct: 392 NRQTVAVAVKSRSNVNSETGEVTYTPLSEADLNSIRQILIGTVGYSENRGDLLNVLSMPF 451

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
            E ++     V +      +     + +ALV ++  L++      A+++L N       +
Sbjct: 452 AEPEVEQIADVPIWEHPNFNDWIRWLASALVIIIVVLVLV---RPAMKKLINPAADSDDQ 508

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
           + G       PI +   T L+ +D   +DS     F    +L    N +  +     +  
Sbjct: 509 MYGP---DGMPIGADGETSLIGSD---IDSGELFEFGSGIDLP---NLHKDEDVLKAVRA 559

Query: 534 MIEINEERFAKILRKWARS 552
           ++    E  A++++ W ++
Sbjct: 560 LVANEPELAAQVVKNWMQN 578


>gi|254228436|ref|ZP_04921862.1| flagellar M-ring protein FliF [Vibrio sp. Ex25]
 gi|262393588|ref|YP_003285442.1| flagellar M-ring protein FliF [Vibrio sp. Ex25]
 gi|47080313|dbj|BAD18882.1| basal body protein [Vibrio alginolyticus]
 gi|151939024|gb|EDN57856.1| flagellar M-ring protein FliF [Vibrio sp. Ex25]
 gi|262337182|gb|ACY50977.1| flagellar M-ring protein FliF [Vibrio sp. Ex25]
          Length = 580

 Score =  333 bits (854), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 108/554 (19%), Positives = 239/554 (43%), Gaps = 36/554 (6%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
               L R  +L+L+  I V +++ +   F+V  P    L    E  ++  +   L +  I
Sbjct: 47  GDLDLLRQVVLVLSISICVALIVMLF--FWVKEPEMRPLGA-YETEELIPVLDYLDQQKI 103

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
           ++++  +G++ISV SS     ++ +   G+ + ++ +G ++  +   FG++  +++    
Sbjct: 104 NYKL--DGNTISVESSEYNSIKLGMVRSGV-NQATEAGDDILLQDMGFGVSQRLEQERLK 160

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEA 190
            + E ++A+ I+ +  +  ARV + +P    F +     +ASV +     +  K    ++
Sbjct: 161 LSRERQLAQAIEEMKQVRKARVLLALPKHSVFVRHNQEASASVFLTLSTGTNLKQQEVDS 220

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKA 248
           I  +VA+AVP +    +TV D  G+LL++   +       K   + ++ +  +   I+  
Sbjct: 221 IVDMVASAVPGMKTSRITVTDQHGRLLSSGSQDPASAARRKEQELERSQEQALREKIDSV 280

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------T 299
           L   LG  N+ + V  +++    +     +DP++   RS    +D              +
Sbjct: 281 LLPILGYGNYTAQVDIQMDFSAVEQTRKRFDPNTPATRSEYALEDYNNGNMVAGIPGALS 340

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           +QP +  ++ Q++  + D  V    S+    +KE   N+E++T           + R ++
Sbjct: 341 NQPPADASIPQDVAQMKDGSVMGQGSV----RKESTRNFELDTTISHERKQTGTVARQTV 396

Query: 360 AVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           +V + ++ ++    G        +S +  I +++    G +  RGD + + S+ F E + 
Sbjct: 397 SVAIKDRRQVNPDTGEVTYTPMSESEINAIRQVLIGTVGFDQGRGDLLNVLSVKFAEPEA 456

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
                  +      S       +ALV +V  L++      A+++L N     + E+ G  
Sbjct: 457 EQLEEPPIWEHPNFSDWVRWFASALVIIVVVLVLV---RPAMKKLLNPTSDDEDEMYGPD 513

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
            L   PI +   T L+ +D   ++SS    F  S +L    N +  +     +  ++   
Sbjct: 514 GL---PIGADGETSLIGSD---IESSELFEFGSSIDLP---NLHKDEDVLKAVRALVANE 564

Query: 539 EERFAKILRKWARS 552
            E  A++++ W   
Sbjct: 565 PELAAQVVKNWMND 578


>gi|22127339|ref|NP_670762.1| flagellar MS-ring protein [Yersinia pestis KIM 10]
 gi|45442785|ref|NP_994324.1| flagellar MS-ring protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|108809069|ref|YP_652985.1| flagellar MS-ring protein [Yersinia pestis Antiqua]
 gi|108810737|ref|YP_646504.1| flagellar MS-ring protein [Yersinia pestis Nepal516]
 gi|145597806|ref|YP_001161882.1| flagellar MS-ring protein [Yersinia pestis Pestoides F]
 gi|150260260|ref|ZP_01916988.1| lateral flagellar M-ring protein [Yersinia pestis CA88-4125]
 gi|162418149|ref|YP_001604857.1| flagellar MS-ring protein [Yersinia pestis Angola]
 gi|165924858|ref|ZP_02220690.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165939096|ref|ZP_02227648.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166009035|ref|ZP_02229933.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166211925|ref|ZP_02237960.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167398942|ref|ZP_02304466.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167419368|ref|ZP_02311121.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167425084|ref|ZP_02316837.1| flagellar M-ring protein FliF [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|167466352|ref|ZP_02331056.1| flagellar M-ring protein FliF [Yersinia pestis FV-1]
 gi|170022960|ref|YP_001719465.1| flagellar MS-ring protein [Yersinia pseudotuberculosis YPIII]
 gi|218927901|ref|YP_002345776.1| flagellar MS-ring protein [Yersinia pestis CO92]
 gi|229837397|ref|ZP_04457560.1| Flagellar M-ring protein fliF [Yersinia pestis Pestoides A]
 gi|229840610|ref|ZP_04460769.1| Flagellar M-ring protein fliF [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229842839|ref|ZP_04462991.1| Flagellar M-ring protein fliF [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229900934|ref|ZP_04516058.1| Flagellar M-ring protein fliF [Yersinia pestis Nepal516]
 gi|270487684|ref|ZP_06204758.1| flagellar M-ring protein FliF [Yersinia pestis KIM D27]
 gi|294502778|ref|YP_003566840.1| flagellar M-ring protein [Yersinia pestis Z176003]
 gi|21960421|gb|AAM87013.1|AE013949_7 putative flagellar M ring protein [Yersinia pestis KIM 10]
 gi|45437651|gb|AAS63201.1| putative flagellar M-ring protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108774385|gb|ABG16904.1| flagellar M-ring protein [Yersinia pestis Nepal516]
 gi|108780982|gb|ABG15040.1| putative flagellar M-ring protein [Yersinia pestis Antiqua]
 gi|115346512|emb|CAL19388.1| putative flagellar M-ring protein [Yersinia pestis CO92]
 gi|145209502|gb|ABP38909.1| flagellar M-ring protein [Yersinia pestis Pestoides F]
 gi|149289668|gb|EDM39745.1| lateral flagellar M-ring protein [Yersinia pestis CA88-4125]
 gi|162350964|gb|ABX84912.1| flagellar M-ring protein FliF [Yersinia pestis Angola]
 gi|165913052|gb|EDR31677.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165923058|gb|EDR40209.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165992374|gb|EDR44675.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166206671|gb|EDR51151.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166963362|gb|EDR59383.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167051446|gb|EDR62854.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167055847|gb|EDR65628.1| flagellar M-ring protein FliF [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|169749494|gb|ACA67012.1| flagellar M-ring protein FliF [Yersinia pseudotuberculosis YPIII]
 gi|229682273|gb|EEO78365.1| Flagellar M-ring protein fliF [Yersinia pestis Nepal516]
 gi|229690106|gb|EEO82163.1| Flagellar M-ring protein fliF [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229696976|gb|EEO87023.1| Flagellar M-ring protein fliF [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229705520|gb|EEO91530.1| Flagellar M-ring protein fliF [Yersinia pestis Pestoides A]
 gi|262360810|gb|ACY57531.1| flagellar M-ring protein [Yersinia pestis D106004]
 gi|262364755|gb|ACY61312.1| flagellar M-ring protein [Yersinia pestis D182038]
 gi|270336188|gb|EFA46965.1| flagellar M-ring protein FliF [Yersinia pestis KIM D27]
 gi|294353237|gb|ADE63578.1| flagellar M-ring protein [Yersinia pestis Z176003]
 gi|320016722|gb|ADW00294.1| Flagellar M-ring protein fliF [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 546

 Score =  333 bits (854), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 128/560 (22%), Positives = 250/560 (44%), Gaps = 29/560 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +LD++ Q    G  LG     IL S + + +   +    + +S  Y  L+   E   + +
Sbjct: 1   MLDKIKQKLSPG-QLGENTKTILMSAVALLVTAAIIFSLWRSSQGYTALFGSQENIPITQ 59

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +   L    I +RI+ +   + V  + +GKARI LAA+G+ +++   GYEL DK +  G 
Sbjct: 60  VVEVLEGEAIAYRINPDNGQVLVAENQLGKARILLAAKGI-TATLPIGYELMDKESMLGS 118

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRAIN 181
           + F+Q +   R+LEGE+A+++ ++S +  ARVH+ M +  SF     A  +ASV++R   
Sbjct: 119 SQFIQNVRYKRSLEGELAQSMMALSAVEYARVHLGMSEASSFAISNHADNSASVVLRLRY 178

Query: 182 PSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQ 235
                 +   AI  LVA ++P +   +V V+D  G+LL+    AN      +     +  
Sbjct: 179 GQTLSTEQVGAIVQLVAGSIPGMKPANVRVVDQHGELLSQAYQANSEGVPSVKSGTELAH 238

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            +Q   E NI   L + +G +N+R +V  +L+M   +     Y PD       R++ +  
Sbjct: 239 YLQSTTEKNIANLLNSVIGANNYRISVSTQLDMSRIEETAEHYGPDP------RINDENI 292

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
           + E S  + A+ +  ++ +    +    ++     + + Q  Y  +       +  YKLE
Sbjct: 293 QQENSNDDMAMGIPGSLSNQPIPQSQAGQTPAAVSRSQAQRKYIYDRNIRHVRYPGYKLE 352

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           ++++AVV+NK            +        E+ +++  A GI+ +RGD++TI  M F  
Sbjct: 353 KMTVAVVLNKS-------LPVLEQWTPEQQEELKRLIEDAAGIDVKRGDSLTINMMAFAV 405

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
             L +   +         R    +   L+    +LLV + G+  L + ++   ++   + 
Sbjct: 406 PTLIDEPVMPWWQEPSTFRWAELLGIGLL----SLLVLWFGVRPLMKRYSRKGSENLPLA 461

Query: 476 GKSILSPPPISSAVTTGLMPNDNI-ALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
             S  +   +    T       +    ++ +      S +L  + +   +K +   L  +
Sbjct: 462 ISSASADEALDHVDTGVDGAESSPRTENAFSASSLWKSDDLPEQGSGLETKIAH--LQQL 519

Query: 535 IEINEERFAKILRKWARSEI 554
            +   ER A+++++W  S  
Sbjct: 520 AQSETERTAEVIKQWINSNE 539


>gi|86149222|ref|ZP_01067454.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|148926414|ref|ZP_01810097.1| flagellar M-ring protein [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|205356032|ref|ZP_03222800.1| flagellar M ring protein [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|218561977|ref|YP_002343756.1| flagellar MS-ring protein [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|85840580|gb|EAQ57837.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|112359683|emb|CAL34469.1| flagellar M-ring protein [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|145844577|gb|EDK21683.1| flagellar M-ring protein [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|205346156|gb|EDZ32791.1| flagellar M ring protein [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|284925590|gb|ADC27942.1| flagellar MS-ring protein [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|315928381|gb|EFV07695.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni
           DFVF1099]
 gi|315930535|gb|EFV09578.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni
           305]
          Length = 560

 Score =  333 bits (854), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 120/566 (21%), Positives = 231/566 (40%), Gaps = 28/566 (4%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEV 57
            +L Q+ Q +++ T   + RI+I AS+I+V   L   A F  +  +    Y  L   +  
Sbjct: 5   NMLHQIGQLYQNLTR--KQRIVIAASIIVVVGFLVFLALFRGSGSNANNGYAVLVENVSP 62

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
           S    I   L + NI +++    + I VP   V + R+ +A++GL   S   G+E FD  
Sbjct: 63  SSSAAIVAKLEQNNIPYKLESE-NKILVPQDQVYRQRMFIASEGLIKDSR-VGFEAFD-T 119

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
            +FG T+  Q++   RA+EGE+ARTI+++  I +A VHI  P    F +    PTASV++
Sbjct: 120 QAFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASVVV 179

Query: 178 RAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIV 234
                     K  + I+++V+AAVP L   +V + D +G  L   E  E +++   +   
Sbjct: 180 NVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIKFK 239

Query: 235 QAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293
              +  +E  I + LA F  G+D  + +V  + +   Q+ +  +YDP+  V     L+++
Sbjct: 240 SDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLNEE 299

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
               +  + +       N+  V    +     ++   K +  +N E++     T      
Sbjct: 300 RTGRKDPEIQGVPGAVSNIGPV--EGLDNKGQIDTYKKNQVTTNNELSKTITNTKKQFAT 357

Query: 354 LERLSIAVVVNKGRL----TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
           + R S AV ++             +S         LA +  IV      ++ RGD++ + 
Sbjct: 358 VLRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEELASVESIVKNTINFSATRGDSVVVQ 417

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
           ++ F    +     V+       +R     I  + + +  +L+       +         
Sbjct: 418 NLPFHRESIRVESKVKT----FYNRFVEPFIPPVKYFIAAILLFIFYKKVIAPFTQKML- 472

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
            +     + +   P          +   N A     + +       +  I   V  +   
Sbjct: 473 -EDVAAQEEMQQGPNAVLDDAEDALEKFNAARKKVEEQLGFGDNFNEDSIQYEVLLE--- 528

Query: 530 RLLHMIEINEERFAKILRKWARSEIE 555
           +L  ++    E  A +L+   +++ E
Sbjct: 529 KLRGLVSDKGEEIAALLQNLIQNDSE 554


>gi|167040330|ref|YP_001663315.1| flagellar M-ring protein FliF [Thermoanaerobacter sp. X514]
 gi|300914414|ref|ZP_07131730.1| flagellar M-ring protein FliF [Thermoanaerobacter sp. X561]
 gi|307724350|ref|YP_003904101.1| flagellar M-ring protein FliF [Thermoanaerobacter sp. X513]
 gi|166854570|gb|ABY92979.1| flagellar M-ring protein FliF [Thermoanaerobacter sp. X514]
 gi|300889349|gb|EFK84495.1| flagellar M-ring protein FliF [Thermoanaerobacter sp. X561]
 gi|307581411|gb|ADN54810.1| flagellar M-ring protein FliF [Thermoanaerobacter sp. X513]
          Length = 503

 Score =  333 bits (853), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 123/567 (21%), Positives = 224/567 (39%), Gaps = 85/567 (14%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
              +QL  F+       + ++ I+A ++ + I L +   + VN P+Y  LY  L + D  
Sbjct: 7   NFREQLTNFWNKFDKKQKIQLGIIAILLFIGISLLV---YIVNRPNYVVLYSDLSIKDAG 63

Query: 62  RISVALSEA-NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK-VNS 119
            +   L     I ++IS++G++I VP+    + R+ LA +G+P      G+   D   NS
Sbjct: 64  AVVEKLKTEFKIPYKISNDGTTILVPAQYKDEVRMKLATEGIPQG----GFSFQDAMNNS 119

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARPTASVMI 177
              T   +    +  L+ EI  ++++I G+  A V+IV+PD  +F       + TA+VM+
Sbjct: 120 LATTDQERRQKYLYFLQNEIQNSLKTIDGVQDAIVNIVVPDQNAFVLSNTTNQATAAVML 179

Query: 178 RAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIV 234
                        + I   V+ +V  L   +VTV+D+ GK+LTA ++          ++ 
Sbjct: 180 TLKPGVTLSSSQVKGIIDFVSKSVEGLKPENVTVIDNNGKILTAESDTTAENANTQFTLQ 239

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIR 289
           + +Q +++ ++   L    G  N        LN D +    I Y P     +  + RSI+
Sbjct: 240 KKVQEDLQNSLQTLLEQVFGPGNVVVRANVTLNFDKKTQDTIEYLPVQGNDNKGIVRSIQ 299

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
             K+  ++  +Q  S+     N P V+           +  + E   NYEIN    +   
Sbjct: 300 ELKE--KATGTQGGSSPGTASNNPPVAST---TGNGTSDYSRTETTINYEINQIKTSLVQ 354

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD---TI 406
              K+E +SIAVVVN             Q   +S   +I  +V+ A G     GD    +
Sbjct: 355 AQGKIENISIAVVVN-------------QNLNNSMKQQIADLVTKAAG-----GDSLVQV 396

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
           ++  M F ++ L  +   Q      +  +   ++ ALV   G  L+       +RR    
Sbjct: 397 SVQGMQFNQD-LLKTMQQQAKASKGVPVYVWAILAALVLGGGLFLI------MMRRKKKE 449

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
                 E    + + P  +                                 I+     +
Sbjct: 450 TSLTTAEQEVLATVEPTYV---------------------------------IDFSDKDE 476

Query: 527 SDLRLLHMIEINEERFAKILRKWARSE 553
              ++  +I+   +   +I+R W   E
Sbjct: 477 KKKQIEKLIKEKPDIVVQIIRTWLNEE 503


>gi|218708823|ref|YP_002416444.1| flagellar MS-ring protein [Vibrio splendidus LGP32]
 gi|218321842|emb|CAV17815.1| Flagellar M-ring protein [Vibrio splendidus LGP32]
          Length = 580

 Score =  333 bits (853), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 105/554 (18%), Positives = 228/554 (41%), Gaps = 36/554 (6%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
               L R  +L+L+  I V +++ +   F+V  P    L    E  ++  +   L    I
Sbjct: 48  GDLDLLRQVVLVLSISICVALIVMLF--FWVKEPEMRPLGA-YETEELIPVLDYLDTQKI 104

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
           ++ +   G++ISVP+S     ++++   GL +   N+G ++  +   FG++  +++    
Sbjct: 105 EYSLE--GNTISVPASEYNSLKLNMVRAGL-NQERNTGDDILMQDMGFGVSQRLEKERLK 161

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEA 190
            + E ++A+ I+ +  +  A+V + +P    F +     +ASV +     +  K    ++
Sbjct: 162 LSRERQLAKAIEQMKQVRKAQVLLALPKQSVFVRHNQEASASVFLTLKTGTNLKQQEVDS 221

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNINKA 248
           +  +VA+AVP +    +TV D  G+LL++   +       K   + +  +  +   I+  
Sbjct: 222 VVDMVASAVPGMKTSRITVTDQHGRLLSSGSQDPMSAARRKEHELERNQEQALREKIDSI 281

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------T 299
           L   LG  N+ + V  +L+    +     +DP++   RS    +D              +
Sbjct: 282 LIPILGFGNYTAQVDIQLDFSAVEQTRKRFDPNTPATRSEYTLEDYNNGNVVAGIPGALS 341

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           +QP +  ++ Q++  + D  +    S+     KE   N+E++T        +  + R ++
Sbjct: 342 NQPPADASIPQDVAQMKDGTMMGQGSV----HKEATRNFELDTTISHERKQSGTVNRQTV 397

Query: 360 AVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           +V + ++  L    G         S +  I +++    G +  RGD + + SM F     
Sbjct: 398 SVAIKDRQSLNPDTGEVVHTPIPASEINAIRQVLIGTVGFDENRGDLLNVLSMQFAPQVT 457

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
                V +      +       +ALV +V  L++      A+++L N       ++ G  
Sbjct: 458 DIVADVPIWEHQHFNDWVRWFASALVIIVVVLVLV---RPAMKKLLNPAADDDDQMYGP- 513

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
                PI +   T L+  D   ++      F  S +L    N +  +     +  ++   
Sbjct: 514 --DGMPIGADGETSLIGGD---IEGGELFEFGSSIDLP---NLHKDEDVLKAVRALVANE 565

Query: 539 EERFAKILRKWARS 552
            E  A++++ W   
Sbjct: 566 PELAAQVVKNWVAD 579


>gi|84388111|ref|ZP_00991007.1| flagellar M-ring protein [Vibrio splendidus 12B01]
 gi|84377178|gb|EAP94048.1| flagellar M-ring protein [Vibrio splendidus 12B01]
          Length = 580

 Score =  333 bits (853), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 106/552 (19%), Positives = 227/552 (41%), Gaps = 36/552 (6%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
               L R  +L+L+  I V +++ +   F+V  P    L    E  ++  +   L    I
Sbjct: 48  GDLDLLRQVVLVLSISICVALIVMLF--FWVKEPEMRPLGA-YETEELIPVLDYLDLQKI 104

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
           ++ +   G++ISVP+S     ++++   GL +   N+G ++  +   FG++  +++    
Sbjct: 105 EYTLE--GNTISVPASEYNSLKLNMVRAGL-NQERNAGDDILMQDMGFGVSQRVEQERLK 161

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEA 190
            + E ++A+ I+ +  +  A+V + +P    F +     +ASV +     +  K    ++
Sbjct: 162 LSRERQLAKAIEQMKQVRKAQVLLALPKQSVFVRHNQEASASVFLTLKTGTNLKQQEVDS 221

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNINKA 248
           +  +VA+AVP +    +TV D  G+LL +   +       K   + +  +  +   I+  
Sbjct: 222 VVDMVASAVPGMKTSRITVTDQHGRLLNSGSQDPMSAARRKEHELERNQEQALREKIDSI 281

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET--------- 299
           L   LG  N+ + V  +L+    +     +DP++   RS    +D     T         
Sbjct: 282 LIPILGFGNYTAQVDIQLDFSAVEQTRKRFDPNTPATRSEYTLEDYNNGNTVAGIPGALS 341

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           +QP +  ++ Q++  + D  +    S+     KE   N+E++T        +  + R ++
Sbjct: 342 NQPPADASIPQDVAQMKDGSMTGQGSV----HKEATRNFELDTTISHERKQSGTVNRQTV 397

Query: 360 AVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           +V + ++  L    G         S +  I +++    G +  RGD + + SM F     
Sbjct: 398 SVAIKDRQSLNPDTGEVVHTPIPASEINAIRQVLIGTVGFDENRGDLLNVLSMQFAPQVT 457

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
                V +      +       +ALV +V  L++      A+++L N       ++ G  
Sbjct: 458 DIVADVPIWEHPNFNDWVRWFASALVIIVVVLVLV---RPAMKKLLNPAADDDDQMYGP- 513

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
                PI +   T L+  D   ++      F  S +L    N +  +     +  ++   
Sbjct: 514 --DGMPIGADGETSLIGGD---IEGGELFEFGSSIDLP---NLHKDEDVLKAVRALVANE 565

Query: 539 EERFAKILRKWA 550
            E  A++++ W 
Sbjct: 566 PELAAQVVKNWM 577


>gi|126738564|ref|ZP_01754269.1| flagellar M-ring protein FliF [Roseobacter sp. SK209-2-6]
 gi|126720363|gb|EBA17069.1| flagellar M-ring protein FliF [Roseobacter sp. SK209-2-6]
          Length = 520

 Score =  332 bits (852), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 149/533 (27%), Positives = 225/533 (42%), Gaps = 37/533 (6%)

Query: 48  YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
              LY  LE      +  +L +    + +   G SI VPS    + R+ LA++GLP++  
Sbjct: 1   MRLLYAGLESGSAGDVVRSLEQRGTPYEVR--GGSIYVPSDQRDELRLTLASEGLPANGG 58

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
             GYEL D ++ FG TS M +    RA EGE+ARTI     I  ARVHI       F++ 
Sbjct: 59  K-GYELLDSLSGFGTTSQMFDAAYWRAKEGELARTIVGSPHISQARVHIANTGSNPFQRT 117

Query: 168 GARPTASVMIRAIN-PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI 226
              PTASV +  +  P     A AIR L+A+AV  L + +V V+D+ G L+ + E     
Sbjct: 118 VD-PTASVSVVPLGSPITPAQANAIRFLIASAVTGLAVDNVAVIDANGALIGSTEAAAAA 176

Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVER 286
              S    Q+    I   + + + A +G  N    V  +   DT+ IRE   DP+S+V  
Sbjct: 177 GAGSDDRSQS----IRDRVMRLVEARVGHGNAVVEVSVDTVTDTESIREKRVDPESRVAI 232

Query: 287 SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346
           S  + + A  S  S     VTV  N+P           S  NT    E+ NYEI+     
Sbjct: 233 STDVEERADSS--SNQTGEVTVASNLPD--GDAASGEGSKNNTSATRERVNYEISETEKE 288

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
                  ++RL++AV++N    T   G +  + + +  LA + +++SAA G +  RGD I
Sbjct: 289 IIRGPGAIKRLTVAVLINGTTSTTATGETQFEPRPEEELAALRELISAAVGFDESRGDVI 348

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL------ 460
           T+ SM+ L +          SFMD L      +I      + +L++    +  +      
Sbjct: 349 TLKSME-LPSIEPQGTEATASFMDNLYFDTMGIIQVAALALVSLILGLFVVRPILASSGS 407

Query: 461 -----RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND---NIALDSSNQDIFSHS 512
                    +  D      GG   L     +  +   +M  D   NIALD   ++     
Sbjct: 408 GDSAALPALSSPDPMGDLPGGLPELPAMNTAPNMGDFMMNPDLGSNIALDGEIENEAGQF 467

Query: 513 RNLQSRINSYVSKQ--------SDLRLLHMIEINEERFAKILRKWARSEIEDR 557
            +L                      RL  MI   +E   +ILR W   E E+R
Sbjct: 468 DSLGGMGGLPALGGGMGGGGDNPVDRLREMIGERQEETVQILRGWL-EENEER 519


>gi|307315211|ref|ZP_07594790.1| flagellar M-ring protein FliF [Escherichia coli W]
 gi|331666532|ref|ZP_08367406.1| flagellar M-ring protein FliF [Escherichia coli TA271]
 gi|306905392|gb|EFN35929.1| flagellar M-ring protein FliF [Escherichia coli W]
 gi|315059474|gb|ADT73801.1| Lateral flagellar M-ring protein [Escherichia coli W]
 gi|323181532|gb|EFZ66952.1| flagellar M-ring protein FliF [Escherichia coli 1357]
 gi|323379968|gb|ADX52236.1| flagellar M-ring protein FliF [Escherichia coli KO11]
 gi|331065756|gb|EGI37640.1| flagellar M-ring protein FliF [Escherichia coli TA271]
          Length = 548

 Score =  332 bits (851), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 131/564 (23%), Positives = 244/564 (43%), Gaps = 41/564 (7%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L Q    F+   +  +   L+    + V     + +  +  +  Y +LY + E   V++I
Sbjct: 8   LTQAFPAFRLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQI 67

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    + +RI      I VP   + K R+ LAA+G+  +   SGYEL DK    G +
Sbjct: 68  VTVLDGEKLTYRIDPQSGQILVPEEALSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSS 126

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINP 182
            F+Q +   R+LEGE+A++I S+  + +ARVH+ + +  SF      + +ASV++R    
Sbjct: 127 QFVQNVRYKRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYG 186

Query: 183 SVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQA 236
           +        AI HLV+ ++P L    V+V+D  G LLT    A E       K   I++ 
Sbjct: 187 AKLNMDQVNAIVHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKD 246

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           IQ +   ++   L + +G  N+R +V+ +L++ T    +  Y    K+ R     +    
Sbjct: 247 IQDKTHASVANVLDSLVGSGNYRVSVMPDLDLSTIDETQEHYGDAPKINR----EESVLD 302

Query: 297 SETSQPE-SAVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHD 350
           S+T+Q          N P V+  ++             +   E + +Y  +       H 
Sbjct: 303 SDTNQVAMGVPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHP 362

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
            + ++RL++AVV+N+          A +       A++  +++ A GI+++RGD +T++ 
Sbjct: 363 GFAVKRLNVAVVLNQNA-------PALKNWKPEQTAQLTALLNNAAGIDAQRGDNLTLSL 415

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           ++F+   +     + +   D +    A V      L+  LL+ F+    ++RL  +    
Sbjct: 416 LNFVPQAVPVEPIIPLWKDDSV---LAWVRLIGCGLLALLLLFFVVRPVMKRLTAVR--- 469

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
                        P S AV+   +        + +        +L S+ +    K   L+
Sbjct: 470 --------APIITPESEAVSEPWIAMPEEERKNVDLPSLPGDDSLPSQSSGLEVKLEFLQ 521

Query: 531 LLHMIEINEERFAKILRKWARSEI 554
            L M + +  R A++LR+W  S  
Sbjct: 522 KLAMSDTD--RVAEVLRQWITSNE 543


>gi|311085815|gb|ADP65897.1| flagellar MS-ring protein [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
          Length = 489

 Score =  332 bits (851), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 92/380 (24%), Positives = 173/380 (45%), Gaps = 22/380 (5%)

Query: 52  YVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGY 111
           Y  L   D   I   L+E  I ++ +D+   I VP   V + R+ LA   LP   S  G+
Sbjct: 2   YNHLSNEDSGSIINELNEMKIPYQFTDSDGPILVPKDKVYEIRLRLAENNLPRGGS-IGF 60

Query: 112 ELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARP 171
           EL DK   FG++ + ++I   RALEGE+ARTI+ I+ +  AR+HI       F +   + 
Sbjct: 61  ELLDKE-KFGISQYNEQINYHRALEGELARTIKKINSVKNARIHIAFSKSSLFLQDKKKS 119

Query: 172 TASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILG 228
           +AS+++              AI HL+++++ +L + ++T++D +GKLL    +E   +  
Sbjct: 120 SASIILELQPGRNLNTGQINAIMHLISSSISDLPVENITIVDQSGKLLNQTSVEYDQVND 179

Query: 229 KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KV 284
                 + I+      I   L   +G+ N  + V A+++ + Q+  +  Y P+S    + 
Sbjct: 180 SQFKYTEEIETRYRNRIKNILEPLVGIGNIYAQVTAQIDFNAQEKTQEKYSPNSDHKNQS 239

Query: 285 ERSIRLSKDAQRSETSQPESAVTVEQNMPH--VSDRKVPLPRSLENTD-------KKEEQ 335
            RS ++    +  +++  E       N  +    +  +   ++L+N          ++  
Sbjct: 240 IRSHQIIIHNEIEKSNIQEETPIPLSNSNNHVYFNNNIKNSKNLKNNYIPVDSKINRDNT 299

Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395
            NYE+N     T  +  +++RLS AV+VN  +                 +  I  ++  A
Sbjct: 300 VNYELNHSVSHTKMNIGEIKRLSAAVIVNFSKDKNGK----FVPLSTQKIKNIEHLIREA 355

Query: 396 TGINSRRGDTITITSMDFLE 415
            G +  RGD++ + +  F +
Sbjct: 356 IGYSKARGDSVHLVNASFAK 375


>gi|260853453|ref|YP_003227344.1| putative lateral flagellar basal-body M-ring and collar protein
           [Escherichia coli O26:H11 str. 11368]
 gi|257752102|dbj|BAI23604.1| predicted lateral flagellar basal-body M-ring and collar protein
           [Escherichia coli O26:H11 str. 11368]
 gi|323158008|gb|EFZ44109.1| flagellar M-ring protein FliF [Escherichia coli EPECa14]
          Length = 548

 Score =  332 bits (851), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 129/557 (23%), Positives = 242/557 (43%), Gaps = 41/557 (7%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           F+   +  +   L+    + V     + +  +  +  Y +LY + E   V++I   L   
Sbjct: 15  FRLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQIVTVLDGE 74

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
            + +RI      I VP   + K R+ LAA+G+  +   SGYEL DK    G + F+Q + 
Sbjct: 75  KLTYRIDPQSGQILVPEEALSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSSQFVQNVR 133

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINPSVY--KS 187
             R+LEGE+A++I S+  + +ARVH+ + +  SF      + +ASV++R    +      
Sbjct: 134 YKRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYGAKLNMDQ 193

Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEM 243
             AI HLV+ ++P L    V+V+D  G LLT    A E       K   I++ IQ +   
Sbjct: 194 VNAIVHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTHA 253

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           ++   L + +G  N+R +V+ +L++ T    +  Y    K+ R     +    S+T+Q  
Sbjct: 254 SVANVLDSLVGSGNYRVSVMPDLDLSTIDETQEHYGDAPKINR----EESVLDSDTNQVA 309

Query: 304 -SAVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHDNYKLERL 357
                   N P V+  ++             +   E + +Y  +       H  + ++RL
Sbjct: 310 MGVPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHPGFAVKRL 369

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           ++AVV+N+          A +       A++  +++ A GI+++RGD +T++ ++F+   
Sbjct: 370 NVAVVLNQNA-------PALKNWKPEQTAQLTALLNNAAGIDAQRGDNLTLSLLNFVPQA 422

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
           +     + +   D +    A V      L+  LL+ F+    ++RL  +           
Sbjct: 423 VPVEPIIPLWKDDSV---LAWVRLIGCGLLALLLLFFVVRPVMKRLTAVR---------- 469

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
                 P S AV+   +        + +        +L S+ +    K   L+ L M + 
Sbjct: 470 -APIITPESEAVSEPWIAMPEEERKNVDLPSLPGDDSLPSQSSGLEVKLEFLQKLAMSDT 528

Query: 538 NEERFAKILRKWARSEI 554
           +  R A++LR+W  S  
Sbjct: 529 D--RVAEVLRQWITSNE 543


>gi|167576644|ref|ZP_02369518.1| flagellar MS-ring protein [Burkholderia thailandensis TXDOH]
          Length = 531

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 115/512 (22%), Positives = 207/512 (40%), Gaps = 20/512 (3%)

Query: 45  SPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPS 104
             +Y  L+   E   ++ +  AL    I +RI  +   + V  S V +AR+ LAA+G+ +
Sbjct: 32  QANYKPLFGAREPVQLDDVVSALDAQRIPYRIHPDTGQVLVARSDVARARMMLAARGV-T 90

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           + +  G E  D+ +  G + F+Q++   R LE E+A++I ++  +  ARVH+ +    SF
Sbjct: 91  AKAAPGLEQIDQDDPLGTSQFVQDVRFRRGLESELAQSIATLDPVERARVHLSIAKSSSF 150

Query: 165 RKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE 221
             +    +A+ ++  + P      +   A+ +LVA +VPNL  G V+V+D  G  L+A  
Sbjct: 151 VMMDGDKSAASVVLTLKPGARLAKEQIAAVINLVAGSVPNLAPGKVSVVDQHGAFLSARV 210

Query: 222 MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD 281
                L  +  I    + ++  N+   LA  LG  NFR +V A +N D  +     +   
Sbjct: 211 DLDGDLTGNDEIAARFRDDVTRNVEDLLAPSLGPGNFRVSVTAVVNNDRVEETREQFGEA 270

Query: 282 SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEIN 341
            KV      ++  +               N P   D     P +   + +      +  +
Sbjct: 271 PKVMSEATRNEQNRD---RVALGVPGSLSNRP--VDVPASGPDADSGSRRNATTRQFAYD 325

Query: 342 TKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR 401
                      +LE+LS+AVV+N       +  +  +      L  I+ I+ +  GI+ +
Sbjct: 326 RNITQIKRGRGQLEKLSVAVVLN-----NAVSPTKGKPWQPDQLRRIDDILRSGLGIDKQ 380

Query: 402 RGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461
           RGD + ++S+DF                D L +    +  AL  L G LL+    L  L+
Sbjct: 381 RGDQLIVSSLDFAAPA---PAEPWWKERDTLEQGGWYLTYALAALFGYLLLARPMLRMLQ 437

Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521
           +               S L  P    A      P+D      +   +        +    
Sbjct: 438 QWMQHRYGAPPAAAPASRLQAPEGGDAQAALPAPDDARPPLGAMLPLLDDVELPPADSGV 497

Query: 522 YVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
            V       L  + E   ER A+++++W R++
Sbjct: 498 EVLIGH---LRSLSEKEPERVAEVVKQWIRND 526


>gi|187935660|ref|YP_001885041.1| flagellar MS-ring protein [Clostridium botulinum B str. Eklund 17B]
 gi|187723813|gb|ACD25034.1| flagellar M-ring protein FliF [Clostridium botulinum B str. Eklund
           17B]
          Length = 520

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 119/563 (21%), Positives = 231/563 (41%), Gaps = 56/563 (9%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            +L+++   ++   +  +   + +    +  I+   +   + +S  Y  L+  L+  D  
Sbjct: 3   KLLEKVKGLWEKFKTQSKKIKIAIFVSCVAVIIAIASTAIYTSSNKYQVLFSNLDPKDAQ 62

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L+E  +  +I   G +I VP+  V + R+ LA +     S +SGYEL D  +SFG
Sbjct: 63  TILAKLNEQKVTTKIQ--GDTILVPNDKVDQLRLELAPE---LKSGSSGYELMDSGSSFG 117

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           +T    ++ ++R  EGE+ +TI+S S I +ARVHI       F K      A+V +    
Sbjct: 118 MTDEEFKVKKLRMQEGELEKTIKSFSQIESARVHITPSTDSVFVKESTPGKAAVYLELKT 177

Query: 182 PS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-------RNILGKSLS 232
            S       ++I  LV+ +  N+   ++ V+D    LLTAN  +          L K  S
Sbjct: 178 GSEITKDQVKSIVALVSGSTENVPKENIEVIDDKMNLLTANLNDDENEMMSSESLDKQYS 237

Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292
           + +  + +++  I   L   +G D  ++ V  +L+ D++Q  + V DP+ KV  S +  K
Sbjct: 238 LEKNYESKLQKEIVSLLEPVIGKDKVKATVNVDLDFDSKQQTQTVLDPN-KVVVSQQTIK 296

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
           +   ++ +   S   V+ N+ + +D       +  N+ ++E+++NYEI            
Sbjct: 297 EVNNTDANGNISESPVDNNISNTTDD---TNNTKSNSSREEQKNNYEIGKTETKVISAPG 353

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
           +++R++ +VVV+                  +    I   VS A G NS RGD I++  M+
Sbjct: 354 EVKRMTASVVVDGN-------------LDAATQQAIENAVSNAIGFNSVRGDQISVLGMN 400

Query: 413 FLENQLFNSGTVQVSF-MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471
           F  +   ++     +F  +   +     +      +  L+V  + L   RR +  D+   
Sbjct: 401 FDPSLKEDTQNQTDAFNAEAKQKEMQKYMIMGAIALLALIVIIVILVKKRRKNAKDE--- 457

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
                                    D +  D    +IF            ++  +    +
Sbjct: 458 -----------------YDDDTQLLDVVVGDEKEPEIFEPIEFETKNEKIHMENE----I 496

Query: 532 LHMIEINEERFAKILRKWARSEI 554
                   E+  +I++ W   + 
Sbjct: 497 KKYATDKPEQVVEIIKSWLSEDE 519


>gi|323191522|gb|EFZ76783.1| flagellar M-ring protein FliF [Escherichia coli RN587/1]
          Length = 548

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 127/564 (22%), Positives = 242/564 (42%), Gaps = 41/564 (7%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L Q    F+   +  +   L++   + V     + +  +  +  Y +LY + E   V++I
Sbjct: 8   LTQAFPAFRLRLADNKRWALMVGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQI 67

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    + +RI      I VP   + K R+ LAA+G+  +   SGYEL DK    G +
Sbjct: 68  VTVLDGEKLSYRIDPQSGLILVPEDALSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSS 126

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINP 182
            F+Q +   R+LEGE+A++I S+  + +ARVH+ + +  SF      + +ASV++R    
Sbjct: 127 QFVQNVRYKRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYG 186

Query: 183 SVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQA 236
           +        AI HLV+ ++P L    V+V+D  G LLT    A E       K   I++ 
Sbjct: 187 AKLNMDQVTAIVHLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKD 246

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           IQ +   ++   L + +G  N+R +V+ +L++ T    +  Y    K+ R     +    
Sbjct: 247 IQDKTRASVANVLDSLVGTGNYRVSVMPDLDLSTIDETQEHYGDAPKINR----EESVLD 302

Query: 297 SETSQPE-SAVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHD 350
           S+T+Q          N P ++  ++             +   E + +Y  +       H 
Sbjct: 303 SDTNQVAMGVPGSLSNRPPIAANQMSNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHP 362

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
            + ++RL++AVV+N+          A +        ++  +++ A GI+++RGD ++++ 
Sbjct: 363 GFAVKRLNVAVVLNQNA-------PALKNWKPEQTTQLTALLNNAAGIDAQRGDNLSLSL 415

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           ++F+   +     + +   D       +V+  +  +   LL   L    +R L     A 
Sbjct: 416 LNFVPQAVPVEPVIPLWKDD-------SVLAWVRLIGCGLLALLLLFFVVRPLMKRLTAV 468

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
           +  V         P   AV+   +        + +        +L S+ +    K   L+
Sbjct: 469 RAPV-------ITPEPEAVSEPWIAMPEEERKNVDLPSLPGDDSLPSQSSGLEVKLEFLQ 521

Query: 531 LLHMIEINEERFAKILRKWARSEI 554
            L M + +  R A++LR+W  S  
Sbjct: 522 KLAMSDTD--RVAEVLRQWITSNE 543


>gi|86146136|ref|ZP_01064462.1| flagellar M-ring protein [Vibrio sp. MED222]
 gi|85836083|gb|EAQ54215.1| flagellar M-ring protein [Vibrio sp. MED222]
          Length = 580

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 105/554 (18%), Positives = 227/554 (40%), Gaps = 36/554 (6%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
               L R  +L+L+  I V +++ +   F+V  P    L    E  ++  +   L    I
Sbjct: 48  GDLDLLRQVVLVLSISICVALIVMLF--FWVKEPEMRPLGA-YETEELIPVLDYLDTQKI 104

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
           ++ +   G++ISVP+S     ++++   GL +   N+G ++  +   FG++  +++    
Sbjct: 105 EYSLE--GNTISVPASEYNSLKLNMVRAGL-NQERNTGDDILMQDMGFGVSQRLEKERLK 161

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEA 190
            + E ++A+ I+ +  +  A+V + +P    F +     +ASV +     +  K    ++
Sbjct: 162 LSRERQLAKAIEQMKQVRKAQVLLALPKQSVFVRHNQEASASVFLTLKTGTNLKQQEVDS 221

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNINKA 248
           +  +VA+AVP +    +TV D  G+LL++   +       K   + +  +  +   I+  
Sbjct: 222 VVDMVASAVPGMKTSRITVTDQHGRLLSSGSQDPMSAARRKEHELERNQEQALREKIDSI 281

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------T 299
           L   LG  N+ + V  +L+    +     +DP++   RS    +D              +
Sbjct: 282 LIPILGFGNYTAQVDIQLDFSAVEQTRKRFDPNTPATRSEYTLEDYNNGNVVAGIPGALS 341

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           +QP +  ++ Q++  + D  +    S+     KE   N+E++T        +  + R ++
Sbjct: 342 NQPPADASIPQDVAQMKDGTMMGQGSV----HKEATRNFELDTTISHERKQSGTVNRQTV 397

Query: 360 AVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           +V + ++  L    G         S +  I +++    G +  RGD + + SM F     
Sbjct: 398 SVAIKDRQSLNPDTGEVVHTPIPASEINAIRQVLIGTVGFDENRGDLLNVLSMQFAPQVT 457

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
                V +      +       +ALV +V  L++      A+++L N       ++ G  
Sbjct: 458 DIVADVPIWEHQHFNDWVRWFASALVIIVVVLVLV---RPAMKKLLNPAADDDDQMYGP- 513

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
                PI     T L+  D   ++      F  S +L    N +  +     +  ++   
Sbjct: 514 --DGMPIGVDGETSLIGGD---IEGGELFEFGSSIDLP---NLHKDEDVLKAVRALVANE 565

Query: 539 EERFAKILRKWARS 552
            E  A++++ W   
Sbjct: 566 PELAAQVVKNWVAD 579


>gi|323171047|gb|EFZ56696.1| flagellar M-ring protein FliF [Escherichia coli LT-68]
          Length = 548

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 129/557 (23%), Positives = 245/557 (43%), Gaps = 41/557 (7%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           F+   +  +   L+    + V     + +  +  +  Y +LY + E   V++I   L   
Sbjct: 15  FRLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQIVTVLDGE 74

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
            + +RI      I VP   + K R+ LAA+G+  +   SGY+L DK    G + F+Q + 
Sbjct: 75  KLSYRIDPQSGQILVPEEALSKTRMTLAAKGV-QAILPSGYDLMDKDEVLGSSQFVQNVR 133

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINPSVY--KS 187
             R+LEGE+A++I S+  + +ARVH+ + +  SF      + +ASV++R    +      
Sbjct: 134 YKRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYGAKLNMDQ 193

Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEM 243
             AI HLV+ ++P L    V+V+D  G LLT    A E       K   I++ IQ +   
Sbjct: 194 VNAIVHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRA 253

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           ++   L + +G  N+R +V+ +L++ T    +  Y    K+ R     +    S+T+Q  
Sbjct: 254 SVANVLDSLVGSGNYRVSVMPDLDLSTIDETQEHYGDAPKINR----EESVLDSDTNQVA 309

Query: 304 -SAVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHDNYKLERL 357
                   N P V+  ++             +   E + +Y  +       H  + ++RL
Sbjct: 310 MGVPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHPGFAVKRL 369

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           ++AVV+N+          A +       A++  +++ A GI+++RGD +T++ ++F+   
Sbjct: 370 NVAVVLNQNA-------PALKNWKPEQTAQLTALLNNAAGIDAQRGDNLTLSLLNFVPQV 422

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
                 + +   D +    A V      L+  LL+ F+    ++RL  +           
Sbjct: 423 APVEPVIPLWKDDSV---LAWVRLIGCGLLALLLLFFVVRPVMKRLTAVRAP-------- 471

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
            I++P P + +     MP +     + +        +L S+ +    K   L+ L M + 
Sbjct: 472 -IITPEPEAVSEPWIAMPEEE--RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQKLAMSDT 528

Query: 538 NEERFAKILRKWARSEI 554
           +  R A++LR+W  S  
Sbjct: 529 D--RVAEVLRQWITSNE 543


>gi|218703511|ref|YP_002411030.1| flagellar MS-ring protein [Escherichia coli UMN026]
 gi|293403341|ref|ZP_06647432.1| predicted protein [Escherichia coli FVEC1412]
 gi|298378953|ref|ZP_06988834.1| flagellar M-ring protein FliF [Escherichia coli FVEC1302]
 gi|300898054|ref|ZP_07116423.1| flagellar M-ring protein FliF [Escherichia coli MS 198-1]
 gi|218430608|emb|CAR11474.1| Lateral flagellar M-ring protein (FliF-like) [Escherichia coli
           UMN026]
 gi|291429194|gb|EFF02214.1| predicted protein [Escherichia coli FVEC1412]
 gi|298280066|gb|EFI21570.1| flagellar M-ring protein FliF [Escherichia coli FVEC1302]
 gi|300358232|gb|EFJ74102.1| flagellar M-ring protein FliF [Escherichia coli MS 198-1]
          Length = 548

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 131/564 (23%), Positives = 247/564 (43%), Gaps = 41/564 (7%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L Q    F+   +  +   L+    + V     + +  +  +  Y +LY + E   V++I
Sbjct: 8   LTQAFPAFRLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQI 67

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    + +RI      I VP   + K R+ LAA+G+  +   SGYEL DK    G +
Sbjct: 68  VTVLDGEKLSYRIDPQSGQILVPEDALSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSS 126

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINP 182
            F+Q +   R+LEGE+A++I S+  + +ARVH+ + +  SF      + +ASV++R    
Sbjct: 127 QFVQNVRYKRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYG 186

Query: 183 SVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQA 236
           +        AI HLV+ ++P L    V+V+D  G LLT    A E       K   I++ 
Sbjct: 187 AKLNMDQVNAIMHLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKD 246

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           IQ +   ++   L + +G  N+R +V+ +L++ T    +  Y    K+ R     +    
Sbjct: 247 IQDKTRASVANVLDSLVGTGNYRVSVMPDLDLSTIDETQEHYGDAPKINR----EESVLD 302

Query: 297 SETSQPE-SAVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHD 350
           S+T+Q          N P V+  ++             +   E + +Y  +       H 
Sbjct: 303 SDTNQVAMGVPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHP 362

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
            + ++RL++AVV+N+          A +       A++  +++ A GI+ +RGD +T++ 
Sbjct: 363 GFAVKRLNVAVVLNQNA-------PALKNWKPEQTAQLTALLNNAAGIDVQRGDNLTLSL 415

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           ++F+   +     + +   D +    A V      L+  LL+ F+    ++RL  +    
Sbjct: 416 LNFVPQAVPVEPIIPLWKDDSV---LAWVRLIGCGLLALLLLFFVVRPVMKRLTAVRAP- 471

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
                   +++P P + +     MP +     + +        +L S+ +    K   L+
Sbjct: 472 --------VITPEPEAVSEPWIAMPEEE--RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQ 521

Query: 531 LLHMIEINEERFAKILRKWARSEI 554
            L M + +  R A++LR+W  S  
Sbjct: 522 KLAMSDTD--RVAEVLRQWITSNE 543


>gi|269965705|ref|ZP_06179818.1| flagellar M-ring protein [Vibrio alginolyticus 40B]
 gi|269829773|gb|EEZ84009.1| flagellar M-ring protein [Vibrio alginolyticus 40B]
          Length = 580

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 107/554 (19%), Positives = 239/554 (43%), Gaps = 36/554 (6%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
               L R  +L+L+  I V +++ +   F+V  P    L    E  ++  +   L +  I
Sbjct: 47  GDLDLLRQVVLVLSISICVALIVMLF--FWVKEPEMRPLGA-YETEELIPVLDYLDQQKI 103

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
           ++++  +G+++SV SS     ++ +   G+ + ++ +G ++  +   FG++  +++    
Sbjct: 104 NYKL--DGNTVSVESSEYNSIKLGMVRSGV-NQATEAGDDILLQDMGFGVSQRLEQERLK 160

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEA 190
            + E ++A+ I+ +  +  ARV + +P    F +     +ASV +     +  K    ++
Sbjct: 161 LSRERQLAQAIEEMKQVRKARVLLALPKHSVFVRHNQEASASVFLTLSTGTNLKQQEVDS 220

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKA 248
           I  +VA+AVP +    +TV D  G+LL++   +       K   + ++ +  +   I+  
Sbjct: 221 IVDMVASAVPGMKTSRITVTDQHGRLLSSGSQDPASAARRKEQELERSQEQALREKIDSV 280

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------T 299
           L   LG  N+ + V  +++    +     +DP++   RS    +D              +
Sbjct: 281 LLPILGYGNYTAQVDIQMDFSAVEQTRKRFDPNTPATRSEYALEDYNNGNMVAGIPGALS 340

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           +QP +  ++ Q++  + D  V    S+    +KE   N+E++T           + R ++
Sbjct: 341 NQPPADASIPQDVAQMKDGSVMGQGSV----RKESTRNFELDTTISHERKQTGTVARQTV 396

Query: 360 AVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           +V + ++ ++    G        +S +  I +++    G +  RGD + + S+ F E + 
Sbjct: 397 SVAIKDRRQVNPDTGEVTYTPMSESEINAIRQVLIGTVGFDQGRGDLLNVLSVKFAEPED 456

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
                  +      S       +ALV +V  L++      A+++L N     + E+ G  
Sbjct: 457 EQLEEPPIWEHPNFSDWVRWFASALVIIVVVLVLV---RPAMKKLLNPTSDDEDEMYGPD 513

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
            L   PI +   T L+ +D   ++SS    F  S +L    N +  +     +  ++   
Sbjct: 514 GL---PIGADGETSLIGSD---IESSELFEFGSSIDLP---NLHKDEDVLKAVRALVANE 564

Query: 539 EERFAKILRKWARS 552
            E  A++++ W   
Sbjct: 565 PELAAQVVKNWMND 578


>gi|153947902|ref|YP_001399623.1| flagellar MS-ring protein [Yersinia pseudotuberculosis IP 31758]
 gi|152959397|gb|ABS46858.1| flagellar M-ring protein FliF [Yersinia pseudotuberculosis IP
           31758]
          Length = 546

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 129/560 (23%), Positives = 249/560 (44%), Gaps = 29/560 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +LD++ Q    G  LG     IL S   + +   +    + +S  Y  L+   E   V +
Sbjct: 1   MLDKIKQKLSPG-QLGENTKTILMSAAALLVTAAIIFSLWRSSQGYTALFGSQENIPVTQ 59

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +   L    I +RI+ +   + V  + +GKARI LAA+G+ +++   GYEL DK +  G 
Sbjct: 60  VVEVLEGEAIAYRINPDNGQVLVAENQLGKARILLAAKGI-TATLPIGYELMDKESMLGS 118

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRAIN 181
           + F+Q +   R+LEGE+A+++ ++S +  ARVH+ M +  SF     +  +ASV++R   
Sbjct: 119 SQFIQNVRYKRSLEGELAQSMMALSAVEYARVHLGMSEASSFAISNRSDNSASVVLRLRY 178

Query: 182 PSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQ 235
                 +   AI  LVA ++P +   +V V+D  G+LL+    AN      +     +  
Sbjct: 179 GQTLSTEQVGAIVQLVAGSIPGMKPANVRVVDQHGELLSQAYQANSEGVPSVKSGTELAH 238

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            +Q   E NI   L + +G +N+R +V  +L+M   +     Y PD       R++ +  
Sbjct: 239 YLQSTTEKNIANLLNSVIGANNYRISVSTQLDMSRIEETAERYGPDP------RINDENI 292

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
           + E S  + A+ +  ++ +    +    ++     + + Q  Y  +       +  YKLE
Sbjct: 293 QQENSNDDMAMGIPGSLSNQPIPQSQAGQTPAAVSRSQAQRKYIYDRNIRHVRYPGYKLE 352

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           ++++AVV+NK            +        E+ +++  A GI+ +RGD++TI  M F  
Sbjct: 353 KMTVAVVLNKS-------LPVLEQWTPEQQEELKRLIEDAAGIDVKRGDSLTINVMAFAV 405

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
             L +   +         R    +   L+    +LLV + G+  L + ++   ++   + 
Sbjct: 406 PTLIDEPVMPWWQEPSTFRWAELLGIGLL----SLLVLWFGVRPLMKRYSRKGSENLPLA 461

Query: 476 GKSILSPPPISSAVTTGLMPNDNI-ALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
             S  +   +    T       +  A  + +      S +L  + +   +K +   L  +
Sbjct: 462 ISSASADEALDHVDTGVDGVESSPRAETAFSASSLWESDDLPEQGSGLETKIAH--LQQL 519

Query: 535 IEINEERFAKILRKWARSEI 554
            +   ER A+++++W  S  
Sbjct: 520 AQSETERTAEVIKQWINSNE 539


>gi|256020214|ref|ZP_05434079.1| flagellar MS-ring protein [Shigella sp. D9]
 gi|332281376|ref|ZP_08393789.1| lateral flagellar M-ring protein [Shigella sp. D9]
 gi|332103728|gb|EGJ07074.1| lateral flagellar M-ring protein [Shigella sp. D9]
          Length = 548

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 132/564 (23%), Positives = 248/564 (43%), Gaps = 41/564 (7%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L Q    F+   +  +   L+    + V     + +  +  +  Y +LY + E   V++I
Sbjct: 8   LTQAFPAFRLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQI 67

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    + +RI      I VP   + K R+ LAA+G+  +   SGYEL DK    G +
Sbjct: 68  VTVLDGEKLTYRIDPQSGQILVPEEALSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSS 126

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINP 182
            F+Q +   R+LEGE+A++I S+  + +ARVH+ + +  SF      + +ASV++R    
Sbjct: 127 QFVQNVRYKRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYG 186

Query: 183 SVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQA 236
           +        AI HLV+ ++P L    V+V+D  G LLT    A E       K   I++ 
Sbjct: 187 AKLNMDQVNAIVHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKD 246

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           IQ +   ++   L + +G  N+R +V+ EL++ T    +  Y    K+ R     +    
Sbjct: 247 IQDKTHASVANVLDSLVGSGNYRVSVMPELDLSTIDETQEHYGDAPKINR----EESVLD 302

Query: 297 SETSQPE-SAVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHD 350
           S+T+Q          N P V+  ++             +   E + +Y  +       H 
Sbjct: 303 SDTNQVAMGVPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHP 362

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
            + ++RL++AVV+N+          A +       A++  +++ A GI+++RGD +T++ 
Sbjct: 363 GFAVKRLNVAVVLNQNA-------PALKNWKPEQTAQLTALLNNAAGIDAQRGDNLTLSL 415

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           ++F+   +     + +   D +    A V      L+  LL+ F+    ++RL  +    
Sbjct: 416 LNFVPQAVPVEPVIPLWKDDSV---LAWVRLIGCGLLALLLLFFVVRPVMKRLTAVRAP- 471

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
                   +++P P + +     MP +     + +        +L S+ +    K   L+
Sbjct: 472 --------VITPEPEAVSEPWIAMPEEE--RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQ 521

Query: 531 LLHMIEINEERFAKILRKWARSEI 554
            L M + +  R A++LR+W  S  
Sbjct: 522 KLAMSDTD--RVAEVLRQWITSNE 543


>gi|91223544|ref|ZP_01258809.1| flagellar M-ring protein [Vibrio alginolyticus 12G01]
 gi|91191630|gb|EAS77894.1| flagellar M-ring protein [Vibrio alginolyticus 12G01]
          Length = 580

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 107/554 (19%), Positives = 239/554 (43%), Gaps = 36/554 (6%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
               L R  +L+L+  I V +++ +   F+V  P    L    E  ++  +   L +  I
Sbjct: 47  GDLDLLRQVVLVLSISICVALIVMLF--FWVKEPEMRPLGA-YETEELIPVLDYLDQQKI 103

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
           ++++  +G+++SV SS     ++ +   G+ + ++ +G ++  +   FG++  +++    
Sbjct: 104 NYKL--DGNTVSVESSEYNSIKLGMVRSGV-NQATEAGDDILLQDMGFGVSQRLEQERLK 160

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEA 190
            + E ++A+ I+ +  +  ARV + +P    F +     +ASV +     +  K    ++
Sbjct: 161 LSRERQLAQAIEEMKQVRKARVLLALPKHSVFVRHNQEASASVFLTLSTGTNLKQQEVDS 220

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKA 248
           I  +VA+AVP +    +TV D  G+LL++   +       K   + ++ +  +   I+  
Sbjct: 221 IVDMVASAVPGMKTSRITVTDQHGRLLSSGSQDPASAARRKEQELERSQEQALREKIDSV 280

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------T 299
           L   LG  N+ + V  +++    +     +DP++   RS    +D              +
Sbjct: 281 LLPILGYGNYTAQVDIQMDFSAVEQTRKRFDPNTPATRSEYALEDYNNGNMVAGIPGALS 340

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           +QP +  ++ Q++  + D  V    S+    +KE   N+E++T           + R ++
Sbjct: 341 NQPPADASIPQDVAQMKDGSVMGQGSV----RKESTRNFELDTTISHERKQTGTVARQTV 396

Query: 360 AVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           +V + ++ ++    G        +S +  I +++    G +  RGD + + S+ F E + 
Sbjct: 397 SVAIKDRRQVNPDTGEVTYTPMSESEINAIRQVLIGTVGFDQGRGDLLNVLSVKFAEPEA 456

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
                  +      S       +ALV +V  L++      A+++L N     + E+ G  
Sbjct: 457 EQLEEPPIWEHPNFSDWVRWFASALVIIVVVLVLV---RPAMKKLLNPTSDDEDEMYGPD 513

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
            L   PI +   T L+ +D   ++SS    F  S +L    N +  +     +  ++   
Sbjct: 514 GL---PIGADGETSLIGSD---IESSELFEFGSSIDLP---NLHKDEDVLKAVRALVANE 564

Query: 539 EERFAKILRKWARS 552
            E  A++++ W   
Sbjct: 565 PELAAQVVKNWMND 578


>gi|225159031|ref|ZP_03725341.1| flagellar M-ring protein FliF [Opitutaceae bacterium TAV2]
 gi|224802410|gb|EEG20672.1| flagellar M-ring protein FliF [Opitutaceae bacterium TAV2]
          Length = 532

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 128/547 (23%), Positives = 217/547 (39%), Gaps = 39/547 (7%)

Query: 14  GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73
              LG  + + L    L  I    A   +   P Y  LY +L   D   I  AL    + 
Sbjct: 12  WKQLGLNQRISLVVAALAVIGSVAALVIWSRQPDYQLLYGRLADKDAASIISALQAQGVP 71

Query: 74  FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
           +R S  G S+ VP++ V + R+ LAA+GLP      G+E+FDK   FGL+ F+Q     R
Sbjct: 72  YRASAGGGSVYVPANQVHRLRMDLAAKGLP-GGEGVGFEIFDKGQ-FGLSDFVQRTNYTR 129

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINPS-VYKSAEAI 191
           AL+GE+ARTI  + G+  ARV IV P+        G +PTASV +    P    ++  +I
Sbjct: 130 ALQGELARTISQLDGVARARVMIVQPENRLLLIDQGVKPTASVFVELTGPRLDTEAVNSI 189

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTA---NEMERNILGKSLSIVQAIQHEIEMNINKA 248
           R+LVA AV  L    V V+D  G++L++   ++         +   Q ++      +   
Sbjct: 190 RNLVANAVQGLKPAQVAVVDQKGRVLSSELQDDPTLADASSQMRYRQQVEEYFAKKVESL 249

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308
           L   +G  N    V AE++ +     E  YDPD +V R+   ++D   S  ++    V V
Sbjct: 250 LLPVVGAGNAVVRVSAEIDTEAATRVEERYDPDGQVVRTQTSTEDVTNSSEARSGGVVGV 309

Query: 309 EQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368
             N           P    +  +K    +YEIN     TT     +  L+ AV +     
Sbjct: 310 TANATTPPPADQARPTVTNDQTRKNRTLSYEINRTLTNTTRSPGTILGLTAAVFI--APR 367

Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG----DTITITSMDFLENQLFNSGTV 424
               G +A   + ++ +A + ++V  A G+    G    + +T+  + F    + +   +
Sbjct: 368 PPAAGGAAPGPRTEAEIAALRQVVVNALGLRPSPGRRIEELVTLQEVPFQAAGVDDR--I 425

Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPP 484
           +    +   + +    +  V +   +L+ F+    L+R H      +        L  PP
Sbjct: 426 EQIRTETRVQGWIEAASRYVAVAVAVLIFFIFWRMLKRQHPAPVPVE-------FLDQPP 478

Query: 485 ISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAK 544
                             ++++ + +                    L  +I+        
Sbjct: 479 SGDGTAGQPGAAATGLGGAASRPVLTPEM-----------------LNELIKQKPANVGA 521

Query: 545 ILRKWAR 551
            LR W  
Sbjct: 522 ALRDWMA 528


>gi|261209869|ref|ZP_05924170.1| flagellar M-ring protein FliF [Vibrio sp. RC341]
 gi|260841055|gb|EEX67580.1| flagellar M-ring protein FliF [Vibrio sp. RC341]
          Length = 580

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 105/559 (18%), Positives = 228/559 (40%), Gaps = 36/559 (6%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           + F      L R  +L+L+  I V +++ +   F+V  P    L    E  ++  +   L
Sbjct: 43  MDFTVGDLDLLRQVVLVLSISICVALIVMLF--FWVREPDMRPLGA-YETEELIPVLDYL 99

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
            +    +++  +G++I VP S     ++ +   GL +    +G E+  +   FG++  ++
Sbjct: 100 DQQKQQYKL--DGNTILVPVSDYNSLKLSMVRAGL-NQERQAGDEILMQDMGFGVSQRLE 156

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187
           +     + E ++A+ I+ +  I  ARV + +P    F +     +ASV +     +  K 
Sbjct: 157 QERLKLSRERQLAKAIEEMRQINKARVLLALPKQSVFVRQNQEASASVFLSLRTGANLKQ 216

Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE--IEM 243
              +A+  +VA+AVP +    VTV D  G+LL++   +     +        Q E  +  
Sbjct: 217 EEIDAVVDMVASAVPGMKPSRVTVTDQHGRLLSSGSQDPVSAARRKEQELEKQQEEALRG 276

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE----- 298
            I+  L   LG+ N+ + V  EL+    +    V+DP++   RS    +D          
Sbjct: 277 KIDSVLIPILGLGNYTAQVDIELDFSAVEQTRKVFDPNTPATRSEYTLEDYNNGNVVAGV 336

Query: 299 ----TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
               ++QP +  ++ Q++  + D  V    S+     KE   N+E++T        +  +
Sbjct: 337 PGALSNQPPADASIPQDVAQMKDGSVLGQGSV----HKEATRNFELDTTISHERKQSGVV 392

Query: 355 ERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
            R ++AV V ++  +    G        ++ +  I +I+    G +  RGD + + SM F
Sbjct: 393 NRQTVAVAVKSRSSVNPDTGEVTYTPLSEAEINSIRQILIGTVGYSENRGDLLNVLSMPF 452

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
            E ++     V +      +     + +ALV ++  L++      A+++L N       +
Sbjct: 453 AEPEVEQIANVPIWENPNFNDWVRWLASALVIIIVVLVLV---RPAMKKLINPTADSDEQ 509

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
           + G   +           G   +     +  +     +    +  + +         +  
Sbjct: 510 MYGPDGMPIGADGETSLIGSEIDSGELFEFGSGIDLPNLHKDEDVLKA---------VRA 560

Query: 534 MIEINEERFAKILRKWARS 552
           ++    E  A++++ W ++
Sbjct: 561 LVANEPELAAQVVKNWMQN 579


>gi|331671787|ref|ZP_08372583.1| flagellar M-ring protein FliF [Escherichia coli TA280]
 gi|331070776|gb|EGI42135.1| flagellar M-ring protein FliF [Escherichia coli TA280]
          Length = 552

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 130/564 (23%), Positives = 247/564 (43%), Gaps = 37/564 (6%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L Q    F+   +  +   L+    + V     + +  +  +  Y +LY + E   V++I
Sbjct: 8   LTQAFPAFRLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQI 67

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    + +RI      I VP   + K R+ LAA+G+  +   SGYEL DK    G +
Sbjct: 68  VTVLDGEKLSYRIDPQSGQILVPEDELSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSS 126

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINP 182
            F+Q +   R+LEGE+A++I S+  + +ARVH+ + +  SF      + +ASV++R    
Sbjct: 127 QFVQNVRYKRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYG 186

Query: 183 SVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQA 236
           +        AI HLV+ ++P L    V+V+D  G LLT    A E       K   I++ 
Sbjct: 187 AKLNMDQVNAIVHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKD 246

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           IQ +   ++   L + +G  N+R +V+ +L++ T    +  Y    K+ R     +    
Sbjct: 247 IQDKTRASVANVLDSLVGTGNYRVSVMPDLDLSTIDETQEHYGDAPKINR----EESVLD 302

Query: 297 SETSQPE-SAVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHD 350
           S+T+Q          N P V+  ++             +   E + +Y  +       H 
Sbjct: 303 SDTNQVAMGVPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHP 362

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
            + ++RL++AVV+N+        +     +     A++  +++ A GI+ +RGD +T++ 
Sbjct: 363 GFAVKRLNVAVVLNQNAPAMKNWKP---EQTAQLTAQLTALLNNAAGIDVQRGDNLTLSL 419

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           ++F+   +     + +   D +    A V      L+  LL+ F+    ++RL  +    
Sbjct: 420 LNFVPQAVPVEPIIPLWKDDSV---LAWVRLIGCGLLALLLLFFVVRPVMKRLTAVRAP- 475

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
                   +++P P + +     MP +     + +        +L S+ +    K   L+
Sbjct: 476 --------VITPEPEAVSEPWIAMPEEE--RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQ 525

Query: 531 LLHMIEINEERFAKILRKWARSEI 554
            L M + +  R A++LR+W  S  
Sbjct: 526 KLAMSDTD--RVAEVLRQWITSNE 547


>gi|24374740|ref|NP_718783.1| flagellar MS-ring protein [Shewanella oneidensis MR-1]
 gi|24349402|gb|AAN56227.1|AE015760_6 flagellar M-ring protein FliF [Shewanella oneidensis MR-1]
          Length = 553

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 108/556 (19%), Positives = 222/556 (39%), Gaps = 32/556 (5%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
             +   +   R + +   + + + L +    +   P Y  L  K+E  ++ ++   L + 
Sbjct: 14  LGNLGGVDMMRQITMILALAICLALAVFVMIWAQEPEYRPL-GKMETQEMVQVLDVLDKN 72

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
            I ++I  +   + VP     + ++ L+  G+  S++ S  +   + + FG++  M++  
Sbjct: 73  KIKYQIDVD--VVKVPEDKYQEVKMMLSRAGI-DSAATSKQDFLTQDSGFGVSQRMEQAR 129

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV-YKSAE 189
              + E  +AR I+ +  +  A+V + +P    F +  A+P+A+V+I      +     +
Sbjct: 130 LKHSQEENLARAIEQLQSVSRAKVILALPKENVFARNTAQPSATVVINTRRGGLGQGEVD 189

Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNINK 247
           AI  +VA+AV  L+   VTV DS G+LL +   +       + L +VQ  + E    I+ 
Sbjct: 190 AIVDIVASAVQGLEPSRVTVTDSNGRLLNSGSQDGVSARARRELELVQQKETEYRTKIDS 249

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVT 307
            L+  LG DNF S V   ++    +     ++PD    RS    ++   S          
Sbjct: 250 ILSPILGHDNFTSQVDVSMDFTAVEQTAKRFNPDLPSLRSEMTVENN--STGGSTGGIPG 307

Query: 308 VEQNMPHVSDRKVPLPRSLEN------TDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
              N P +         +            +E   N+E++T    T      + R+S++V
Sbjct: 308 ALSNQPPMESNIPQEAATAATESVAAGNSHREATRNFELDTTISHTRQQIGVVRRVSVSV 367

Query: 362 VVN-KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
            V+ K       G+ A   + +  L  I +++  A G +++RGD + + ++ F++  + +
Sbjct: 368 AVDFKPGAAGENGQVARVARTEQELTNIRRLLEGAVGFSAQRGDVLEVVTVPFMDQLVED 427

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG--GKS 478
               ++       R     + ALV LV  L V       L+RL   D     E G  G  
Sbjct: 428 VPAPELWEQPWFWRAVKLGVGALVILVLILAV---VRPMLKRLIYPDRVNMPEDGRLGNE 484

Query: 479 ILSPPPISSAVTTGLM--PNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536
           +       +A T G++       +       +  +       I +         +  ++ 
Sbjct: 485 LAEIEDQYAADTLGMLNTKEAEYSYADDGSILIPNLHKDDDMIKA---------IRALVA 535

Query: 537 INEERFAKILRKWARS 552
              E   ++++ W + 
Sbjct: 536 NEPELSTQVVKNWLQD 551


>gi|167614819|ref|ZP_02383454.1| flagellar MS-ring protein [Burkholderia thailandensis Bt4]
 gi|257141404|ref|ZP_05589666.1| flagellar MS-ring protein [Burkholderia thailandensis E264]
          Length = 531

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 116/513 (22%), Positives = 215/513 (41%), Gaps = 22/513 (4%)

Query: 45  SPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPS 104
             +Y  L+   E   ++ +  AL    I +RI  +   + V  S V +AR+ LAA+G+ +
Sbjct: 32  QANYKPLFGAREPVQLDDVVSALDAQRIPYRIHPDTGQVLVARSDVARARMMLAARGV-T 90

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           + +  G E  D+ +  G + F+Q++   R LE E+A++I ++  +  ARVH+ +    SF
Sbjct: 91  AKAAPGLEQIDQDDPLGTSQFVQDVRFRRGLESELAQSIATLDPVERARVHLSIAKSSSF 150

Query: 165 RKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE 221
             +    +A+ ++  + P      +   A+ +LVA +VPNL  G V+V+D  G  L+A  
Sbjct: 151 VMMDGDKSAASVVLTLKPGARLAKEQIAAVINLVAGSVPNLAPGKVSVVDQHGAFLSARV 210

Query: 222 MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD 281
                L  +  I    + ++  N+   LA  LG  NFR +V A +N D  +     +   
Sbjct: 211 DLDGDLTGNDEIAARFRDDVTRNVEDLLAPSLGPGNFRVSVTAVVNNDRVEETREQFG-- 268

Query: 282 SKVERSIRLSKDAQRSETSQPESAVTVEQNMPH-VSDRKVPLPRSLENTDKKEEQSNYEI 340
                + ++  +A R+E ++   A+ V  ++ +   D     P     + +      +  
Sbjct: 269 ----EAPKVMNEATRNEQNRDRVALGVPGSLSNRPVDVPASGPDVDGGSRRNATTRQFAY 324

Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400
           +           +LE+LS+AVV+N       +  +  +      L  I+ I+ +  GI+ 
Sbjct: 325 DRNITQIKRGRGQLEKLSVAVVLN-----NAVSPTKGKPWQPDQLRRIDDILRSGLGIDK 379

Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460
           +RGD + ++S+DF                D L +    +  AL  L G LL+    L  L
Sbjct: 380 QRGDQLIVSSLDFAAPA---PAEPWWKERDTLEQGGWYLTYALAALFGYLLLARPMLRML 436

Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520
           ++               S L  P    A      P+D      +   +        +   
Sbjct: 437 QQWMQHRYGAPPAAAPASRLQAPEGGDAQAALPAPDDARPPLGAMLPLLDDVELPPADSG 496

Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             V       L  + E   ER A+++++W R++
Sbjct: 497 VEVLIGH---LRSLSEKEPERVAEVVKQWIRND 526


>gi|83718135|ref|YP_438373.1| flagellar MS-ring protein [Burkholderia thailandensis E264]
 gi|83651960|gb|ABC36024.1| flagellar M-ring protein FliF [Burkholderia thailandensis E264]
          Length = 551

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 116/513 (22%), Positives = 215/513 (41%), Gaps = 22/513 (4%)

Query: 45  SPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPS 104
             +Y  L+   E   ++ +  AL    I +RI  +   + V  S V +AR+ LAA+G+ +
Sbjct: 52  QANYKPLFGAREPVQLDDVVSALDAQRIPYRIHPDTGQVLVARSDVARARMMLAARGV-T 110

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           + +  G E  D+ +  G + F+Q++   R LE E+A++I ++  +  ARVH+ +    SF
Sbjct: 111 AKAAPGLEQIDQDDPLGTSQFVQDVRFRRGLESELAQSIATLDPVERARVHLSIAKSSSF 170

Query: 165 RKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE 221
             +    +A+ ++  + P      +   A+ +LVA +VPNL  G V+V+D  G  L+A  
Sbjct: 171 VMMDGDKSAASVVLTLKPGARLAKEQIAAVINLVAGSVPNLAPGKVSVVDQHGAFLSARV 230

Query: 222 MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD 281
                L  +  I    + ++  N+   LA  LG  NFR +V A +N D  +     +   
Sbjct: 231 DLDGDLTGNDEIAARFRDDVTRNVEDLLAPSLGPGNFRVSVTAVVNNDRVEETREQFG-- 288

Query: 282 SKVERSIRLSKDAQRSETSQPESAVTVEQNMPH-VSDRKVPLPRSLENTDKKEEQSNYEI 340
                + ++  +A R+E ++   A+ V  ++ +   D     P     + +      +  
Sbjct: 289 ----EAPKVMNEATRNEQNRDRVALGVPGSLSNRPVDVPASGPDVDGGSRRNATTRQFAY 344

Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400
           +           +LE+LS+AVV+N       +  +  +      L  I+ I+ +  GI+ 
Sbjct: 345 DRNITQIKRGRGQLEKLSVAVVLN-----NAVSPTKGKPWQPDQLRRIDDILRSGLGIDK 399

Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460
           +RGD + ++S+DF                D L +    +  AL  L G LL+    L  L
Sbjct: 400 QRGDQLIVSSLDFAAPA---PAEPWWKERDTLEQGGWYLTYALAALFGYLLLARPMLRML 456

Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520
           ++               S L  P    A      P+D      +   +        +   
Sbjct: 457 QQWMQHRYGAPPAAAPASRLQAPEGGDAQAALPAPDDARPPLGAMLPLLDDVELPPADSG 516

Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             V       L  + E   ER A+++++W R++
Sbjct: 517 VEVLIGH---LRSLSEKEPERVAEVVKQWIRND 546


>gi|306813320|ref|ZP_07447513.1| flagellar MS-ring protein [Escherichia coli NC101]
 gi|305854083|gb|EFM54522.1| flagellar MS-ring protein [Escherichia coli NC101]
          Length = 548

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 128/564 (22%), Positives = 245/564 (43%), Gaps = 41/564 (7%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L Q    F+      +   L+    + V     + +  +  +  Y +LY + E   V++I
Sbjct: 8   LTQAFPAFRLRLVDNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQI 67

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    + + I      I VP   + K R+ LAA+G+  +   SGYEL DK    G +
Sbjct: 68  VTVLDGEKLTYCIDPQSGQILVPEDELSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSS 126

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINP 182
            F+Q +   R+LEGE+A++I S+  + +ARVH+ + +  SF      + +ASV++R    
Sbjct: 127 QFVQNVRYKRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYG 186

Query: 183 SVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQA 236
           +        AI HLV+ ++P L    V+V+D  G LLT    A E       K   I++ 
Sbjct: 187 AKLNMDQVNAIVHLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKD 246

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           IQ +   ++   L + +G  N+R +V+ +L++ T    +  Y    K+ R     +    
Sbjct: 247 IQDKTRASVANVLDSLVGTGNYRVSVMPDLDLSTIDETQEHYGDAPKINR----EESVLD 302

Query: 297 SETSQPE-SAVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHD 350
           S+T+Q          N P ++  ++             +   E + +Y  +       H 
Sbjct: 303 SDTNQVAMGVPGSLSNRPPIAANQMSNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHP 362

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
            + ++RL++AVV+N+          A +        ++  +++ A GI+++RGD +T++ 
Sbjct: 363 GFAVKRLNVAVVLNQNA-------PALKNWKPEQTTQLTALLNNAAGIDAQRGDNLTLSL 415

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           ++F+   +     + +   D +    A V      L+  LL+ F+    ++RL  +    
Sbjct: 416 LNFVPQAVPVEPVIPLWKDDSV---LAWVRLIGCGLLALLLLFFVVRPVMKRLTAVRAP- 471

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
                   +++P P + +     MP +     + +        +L S+ +    K   L+
Sbjct: 472 --------VITPEPEAVSEPWIAMPEEE--RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQ 521

Query: 531 LLHMIEINEERFAKILRKWARSEI 554
            L M + +  R A++LR+W  S  
Sbjct: 522 KLAMSDTD--RVAEVLRQWITSNE 543


>gi|238762371|ref|ZP_04623342.1| Flagellar M-ring protein [Yersinia kristensenii ATCC 33638]
 gi|238699356|gb|EEP92102.1| Flagellar M-ring protein [Yersinia kristensenii ATCC 33638]
          Length = 541

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 125/560 (22%), Positives = 250/560 (44%), Gaps = 34/560 (6%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +LD++ Q   +   LG+ +  IL   + + +   +    +  S  Y  L+   E   V +
Sbjct: 1   MLDKIKQQLPA-IRLGKNQKSILMGAMALLVTGAIIFSLWRGSQGYTALFGSQEHIPVTQ 59

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +   L    I +RI+ +   I V  + +G+ARI LAA+G+ +++  +GYEL D+    G 
Sbjct: 60  VVEVLDGEAIAYRINPDNGQILVAENQLGRARILLAAKGI-TATLPTGYELMDQETMLGS 118

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRAIN 181
           + F+Q +   R+LEGE+A++I +++ +  ARVH+ M +  SF     +  +ASV++R   
Sbjct: 119 SQFIQNVRYKRSLEGELAQSIMALTAVDYARVHLGMSEASSFAISNRSESSASVILRLKY 178

Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQ 235
               K     AI  LVA ++P +   +V V+D  G+LL+    AN      +     +  
Sbjct: 179 GQTLKTEQVGAIVQLVAGSIPAMKAANVRVVDQHGELLSEAYQANSKGMTNVKSGAELAH 238

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            +Q   E +I   L++ +GV+N+R +V  +L++   +     Y  + +V      S +  
Sbjct: 239 YLQSTTEKSIANLLSSVVGVNNYRISVATQLDLSRVEETLERYGAEPRV------SDENI 292

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
           + E    + A+ +  ++ +    +     +     + + Q  Y  +       H  +KLE
Sbjct: 293 QQENGNEDMAMGIPGSLSNQPSAQPRNTNAPAMMSRSQAQRKYAYDRDIRHVRHPGFKLE 352

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           ++++AV++NK          A        L E+ +++  A GI+ +RGD++T+  + F  
Sbjct: 353 KMTVAVILNKSA-------PALDKWTAEQLNELKRLIEDAAGIDVKRGDSLTLNMLAFTA 405

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR-RLHNIDDAKKGEV 474
             +     +   + D  +  +A +    +  +        G+  L  RL   DD      
Sbjct: 406 PIVIEESVIP-WWQDATTFRWAEIAGIGLLSLLF---LLFGVRPLMARLSRPDDKHATLA 461

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
             ++  SP   ++A  +G      +   S  +D      NL  + +   +K +   L  +
Sbjct: 462 MSENADSPNATNTAGESGTATESRLPASSFKED-----DNLPPQGSGLDTKIAH--LQQL 514

Query: 535 IEINEERFAKILRKWARSEI 554
            +   ER A+++++W  +  
Sbjct: 515 AQSETERVAEVIKQWINNNE 534


>gi|323703169|ref|ZP_08114822.1| flagellar M-ring protein FliF [Desulfotomaculum nigrificans DSM
           574]
 gi|323531828|gb|EGB21714.1| flagellar M-ring protein FliF [Desulfotomaculum nigrificans DSM
           574]
          Length = 514

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 131/563 (23%), Positives = 237/563 (42%), Gaps = 65/563 (11%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            +LD+L Q ++  T+  +  ++ILA  +++  + ++        P Y  L   LE  D  
Sbjct: 5   NLLDKLKQRWRE-TNQNKKALIILAGAVVLAGVFYLVLTL--TRPRYAVLLGDLEPRDAG 61

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L    I ++++D G +I VP   V + RI LA++GL  +    G+ELFDK + FG
Sbjct: 62  NIVAQLESDKIPYQLTDQGKTIMVPEDQVDEVRIKLASKGL-LNGMGQGFELFDK-SKFG 119

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
            T F Q+++  RAL+ E+ RTI S+ G+  ARVH+V+P    F      P+ASV+I+   
Sbjct: 120 ETDFEQQVSYQRALQEELRRTITSVEGVEQARVHLVIPTKSVFLDDQGTPSASVVIKLKP 179

Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---------ANEMERNILGKS 230
            +  K    + +  L+  +V  L   +V ++D+ G +L          A       + + 
Sbjct: 180 GASLKPEQVKGLNDLIIGSVEGLKPENVHIIDTEGHVLNDFLKDSSDVAGAFGGTAVERQ 239

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV-ERSIR 289
             I +A + E+E  + + L   LG +   + V A+L+ + QQ       P   V ERS +
Sbjct: 240 QQIRRAYEKELENRVQQMLTKLLGPNKAVAMVTADLDFNQQQTNTTEVLPGPVVSERSTK 299

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
            S +      +   +A    Q++P +++ +        +  K ++  NY+  T+  +   
Sbjct: 300 ESGNDAGGGGTAGSTAQMPGQSVPGINNGQ-------SSYTKSDDIKNYQNGTRVQSVVQ 352

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
              K+ RLS AVV+++                     +I  IV+AA G N +RGD IT++
Sbjct: 353 APGKVLRLSTAVVLDESVKNLDK-------------TQIQDIVTAAIGFNPQRGDQITVS 399

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
           +M F  ++L  +  ++       +     +I A    V  LL T   L            
Sbjct: 400 TMTFDHSELDLAKEMEQEAKQQDNIRLYLIIGAAAAGVLLLLTTIFMLI----------- 448

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
                                  L+   +  +D   ++  +    +   ++         
Sbjct: 449 -----------RRRRRRQKAEQQLLQAQDAVVDEVAEEPPAPKWEIPPPVDKQKE----- 492

Query: 530 RLLHMIEINEERFAKILRKWARS 552
            L  + E      A++L+ W + 
Sbjct: 493 -LKKIAEERPADIAQVLKVWLKE 514


>gi|94968680|ref|YP_590728.1| flagellar M-ring protein FliF [Candidatus Koribacter versatilis
           Ellin345]
 gi|94550730|gb|ABF40654.1| flagellar M-ring protein FliF [Candidatus Koribacter versatilis
           Ellin345]
          Length = 529

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 120/530 (22%), Positives = 226/530 (42%), Gaps = 14/530 (2%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
            Q+  F +S T    T+ L LA   L    L       +  P    LY  L+  D   + 
Sbjct: 12  KQIANFLRSLTG---TQKLWLAFAGLTVTTLLYVFVTMLAKPEMKPLYSGLQAQDAQALG 68

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L+   I+++IS +G+S+SV    +  AR+ +A+ G P S    G+ELFDK N +G + 
Sbjct: 69  SKLAAQKIEYQISPDGTSVSVAVDKLDSARLLVASDGGPKSGR-MGFELFDKPN-WGSSD 126

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           F +++   RALEGE+ RT+ +I G+ A RVH+V+P    F        ASV+++      
Sbjct: 127 FSEKVNYQRALEGELERTLSTIDGVEAVRVHLVLPRESLFADKREEAKASVILKLRGAMS 186

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN 244
             S  AIR  +A AV  L    VTV+D+   L      + +  G  +   +     +   
Sbjct: 187 PNSDVAIRRFLAGAVEGLRPEGVTVIDAENNL---PIGKTSSDGSGVESERD--QALAKE 241

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           + + L   +GV   R++V  E ++ +    +  YDP+S    +++ S++      +Q   
Sbjct: 242 LVRTLEPIVGVGGARASVHVEYDVTSGDETQETYDPNSTAALTMQKSEETVGGTLAQ--G 299

Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
                 N+P+          +   + K E  + Y +N     T     +++R++ A++V+
Sbjct: 300 VPGTASNIPNTQSPSKSTNSADSQSSKSESGT-YAVNRVVRHTLLPAGRIKRITAALLVD 358

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN-QLFNSGT 423
              +T+ +G ++   +    L +I+ +  A+ GIN  RGD + + ++ F EN        
Sbjct: 359 DADVTDAMGNTSRAKRSPEELKKIDSLARASLGINDARGDVLAVENLSFHENKPEVLVPL 418

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
            ++  +  + + F+  +   +  +  L+V  + L  +RR   +   +         +   
Sbjct: 419 TKLDKVARVGKQFSWTLRYALIALLFLIVYVVVLRPVRRQVVLSLKQLPSRPANDAVLNG 478

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
                +  G+   D     ++        +      ++    QS LR   
Sbjct: 479 NTGKVLPQGVESADPAVRQAATLKKQLIEKAKAEPASAGQLVQSWLREEE 528


>gi|116619481|ref|YP_821637.1| flagellar M-ring protein FliF [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116222643|gb|ABJ81352.1| flagellar M-ring protein FliF [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 570

 Score =  330 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 121/544 (22%), Positives = 212/544 (38%), Gaps = 38/544 (6%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +     +  L+  L   D   I   L E+ +++R+ + G S+ VPS+ +   R+ +A  G
Sbjct: 33  WRKEGDFHPLFTGLSAEDAAGIVQKLKESGVEYRLPEGGGSVLVPSNKLADLRLTMAGIG 92

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP S    G+ELFDKVN  G T F + I   RALEGE+ RT+ +++ +  ARVH+  P  
Sbjct: 93  LPKSGR-IGFELFDKVN-LGATEFTEHINYRRALEGELERTVMALAEVETARVHLTFPKD 150

Query: 162 GSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +      ASV++R    +    ++  AI HLV +AV  L  G V+VLD  G LL  
Sbjct: 151 SVFLEAQQPAKASVLVRIRPGAKLAPQNVLAITHLVGSAVEGLSPGAVSVLDMNGNLLNR 210

Query: 220 N-----EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
                 +        +L     ++ E+   +N  L+  LG + FR  V  E +    +  
Sbjct: 211 PKAPGLQDGSEPSAATLDYRHQVETELLAKVNATLSPLLGPEKFRVGVSLECDFTGGEQS 270

Query: 275 EIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEE 334
           E  +DP   V  + + ++D+    T+           +P  + R          T +  E
Sbjct: 271 EETFDPARSVMVTSQRTEDSVGGTTA--AGVPGTASTLPRPTSRPATG---ANKTVRTTE 325

Query: 335 QSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS---ADQGKIDSYLAEINKI 391
             +Y+ +     T   +  + ++S+AV+V++    E    S            L  I  +
Sbjct: 326 NISYQSSRTVKKTHLPSGVVRKMSLAVLVDQDVSWEKDKNSFKRVLVPPSPEKLKVIRDL 385

Query: 392 VSAATGINSRRGDTITITSMDFLENQLFN------------SGTVQVSFMDILSRHFATV 439
           V+  TG +  RGD + I ++ F                    G+        L R    +
Sbjct: 386 VAGITGFSQERGDQLVIETLPFETTLQLEPPVAAVPVPPAKPGSPLPGLPIPLDRKTLLI 445

Query: 440 INALVFLVGTLLVTFLGLHALRRLH--NIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497
              +   +         +   RR     +D A +  +   +       S+ + T     +
Sbjct: 446 AAGVAAAMIVFGAGLFVMRRKRRKQTATVDMASRPTLPAAASQPGAAPSTELLTQGQIEE 505

Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR-------LLHMIEINEERFAKILRKWA 550
            +    + +D      + Q+  +  ++     +       L   I    E   ++LR W 
Sbjct: 506 QLESQLAQRDALQAKMDAQALTSLKLAPVITKKAEVLAKHLREKIAKEPEISVQVLRTWI 565

Query: 551 RSEI 554
           R E 
Sbjct: 566 REEE 569


>gi|294140203|ref|YP_003556181.1| flagellar M-ring protein FliF [Shewanella violacea DSS12]
 gi|293326672|dbj|BAJ01403.1| flagellar M-ring protein FliF [Shewanella violacea DSS12]
          Length = 571

 Score =  330 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 98/532 (18%), Positives = 221/532 (41%), Gaps = 30/532 (5%)

Query: 37  MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIH 96
           +    +   P Y  L  +++  ++ ++   L +  I+++I+ +   I VP       ++ 
Sbjct: 57  VFIMLWAQEPEYRPL-GQMDTQEMVKVLDVLDKNKINYQINVD--VIKVPEDQYQAVKLL 113

Query: 97  LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHI 156
           L+ +G+ S+SS + Y    + + FG++  M++     + E  +AR I+ +  I  A+V +
Sbjct: 114 LSREGIDSASSQNDY--LSQDSGFGVSQRMEQARLKHSQELNLARAIEELRSISRAKVIL 171

Query: 157 VMPDMGSFRKIGARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
            +P    F +  A+P+A+V++      +  +  +A+  +VA+AV  L    VTV DS G+
Sbjct: 172 AIPKENVFSRNRAKPSATVVLNVRRGGLGQEEVDAVVDIVASAVQGLIPTRVTVTDSNGR 231

Query: 216 LLTANEME--RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI 273
           LL +   +       + L +VQ  + E    +   L   LG +NF S V   ++    + 
Sbjct: 232 LLNSGSQDAVSARARRELELVQQKEVEYRTKVQSILMPILGPENFTSQVDVTMDFTAVEQ 291

Query: 274 REIVYDPDSKVERSIRLSKDAQRSETSQP-----ESAVTVEQNMPHVSDRKVPLPRSLEN 328
               Y+PD    RS    ++     ++        +   +E ++P  +        +   
Sbjct: 292 TSKRYNPDLPALRSEMTVENNSDGGSASGIPGALSNQPPMESDIPQDALNAEETSSASRG 351

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR-LTEVLGRSADQGKIDSYLAE 387
           +  +E   N+E++T    T      + R+S++V V+         G+     + +  L+ 
Sbjct: 352 SSHREATRNFELDTTISHTRQQVGTVRRVSVSVAVDYKSGAAGEDGQINRVPRTELELSN 411

Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447
           I +++  A G +++RGD + + ++ F++  L  +   ++       R     +  ++ L 
Sbjct: 412 IRRLLEGAVGFSTQRGDVLEVVTVPFMDQLLEEAPAPELWEQPWFWRALKLGVGGMIILA 471

Query: 448 GTLLVTFLGLHALRRLHNIDDAKKGEVG--GKSILSPPPISSAVTTGLM--PNDNIALDS 503
              L+ F+    L+RL   D A   +    G  +       ++ T G++  P    +   
Sbjct: 472 ---LILFIVRPMLKRLIYPDSANIPDEPKFGDELAEIEDQFASDTLGMLNRPEAEYSYAD 528

Query: 504 SNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
               +          I +         +  ++    E   ++++ W + + +
Sbjct: 529 DGSILIPDLHKDDDMIKA---------IRALVANEPELSTQVIKGWLQQDEQ 571


>gi|117919790|ref|YP_868982.1| flagellar MS-ring protein [Shewanella sp. ANA-3]
 gi|117612122|gb|ABK47576.1| flagellar M-ring protein FliF [Shewanella sp. ANA-3]
          Length = 561

 Score =  330 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 109/561 (19%), Positives = 222/561 (39%), Gaps = 31/561 (5%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +       S   +   R + +   + + + L +    +   P Y  L  K+E  ++ ++ 
Sbjct: 17  ENKSGVLGSLGGVDMMRQITMILALAICLALAVFVMIWAQEPEYRPL-GKMETQEMVQVL 75

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L +  I ++I  +   + VP     + ++ L+  G+ +S + S  +   + + FG++ 
Sbjct: 76  DVLDKNKIKYQIEVD--VVKVPEDKYQEVKMMLSRAGV-NSPAASTQDFLTQDSGFGVSQ 132

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
            M++     + E  +AR I+ +  +  A+V + +P    F +  ++P+A+V+I      +
Sbjct: 133 RMEQARLKHSQEENLARAIEQLQSVSRAKVILALPKENVFARNTSQPSATVVINTRRGGL 192

Query: 185 -YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEI 241
                +AI  +VA+AV  L+   VTV DS G+LL +   +       + L +VQ  + E 
Sbjct: 193 GQGEVDAIVDIVASAVQGLEPSRVTVTDSNGRLLNSGSQDGISARARRELELVQQKEAEY 252

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
              I+  L+  LG DNF S V   ++    +     ++PD    RS    ++   S    
Sbjct: 253 RTKIDSILSPILGPDNFTSQVDVSMDFTAVEQTAKRFNPDLPSLRSEMTVENN--STGGS 310

Query: 302 PESAVTVEQNMPHV-----SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
                    N P +      D              +E   N+E++T    T      + R
Sbjct: 311 TGGIPGALSNQPPMESNIPQDATKATESVTAGNSHREATRNFELDTTISHTRQQIGVVRR 370

Query: 357 LSIAVVVN-KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           +S++V V+ K       G+ A   + +  L  I +++  A G +++RGD + + ++ F++
Sbjct: 371 VSVSVAVDFKPGAAGENGQVARVARTEQELTNIRRLLEGAVGFSAQRGDVLEVVTVPFMD 430

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
             + +    ++       R     I ALV LV  L V       L+RL   D     E  
Sbjct: 431 QLVEDVPAPELWEQPWFWRAVKLGIGALVILVLILAV---VRPMLKRLIYPDSVNMPEDS 487

Query: 476 --GKSILSPPPISSAVTTGLM--PNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
             G  +       +A T G++       +       +  +       I +         +
Sbjct: 488 RLGNELAEIEDQYAADTLGMLNTKEAEYSYADDGSILIPNLHKDDDMIKA---------I 538

Query: 532 LHMIEINEERFAKILRKWARS 552
             ++    E   ++++ W + 
Sbjct: 539 RALVANEPELSTQVVKNWLQD 559


>gi|170021374|ref|YP_001726328.1| flagellar MS-ring protein [Escherichia coli ATCC 8739]
 gi|169756302|gb|ACA79001.1| flagellar M-ring protein FliF [Escherichia coli ATCC 8739]
          Length = 548

 Score =  330 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 131/564 (23%), Positives = 247/564 (43%), Gaps = 41/564 (7%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L Q    F+   +  +   L+    + V     + +  +  +  Y +LY + E   V++I
Sbjct: 8   LTQAFPAFRLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQI 67

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    + +RI      I VP   + K R+ LAA+G+  +   SGYEL DK    G +
Sbjct: 68  VTVLDGEKLSYRIDPQSGQILVPEDELSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSS 126

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINP 182
            FMQ +   R+LEGE+A++I S+  + +ARVH+ + +  SF      + +ASV++R    
Sbjct: 127 QFMQNVRYKRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYG 186

Query: 183 SVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQA 236
           +        AI HLV+ ++P L    V+V+D  G LLT    A E       K   I++ 
Sbjct: 187 AKLNMDQVNAIVHLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKD 246

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           IQ +   ++   L + +G  N+R +V+ +L++ T    +  Y    K+ R     +    
Sbjct: 247 IQDKTRASVANVLDSLVGSRNYRVSVMPDLDLSTIDETQEHYGDAPKINR----EESVLD 302

Query: 297 SETSQPE-SAVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHD 350
           S+T+Q          N P V+  ++             +   E + +Y  +       H 
Sbjct: 303 SDTNQVAMGVPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHP 362

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
            + ++RL++AVV+N+          A +        ++  +++ A GI+++RGD +T++ 
Sbjct: 363 GFAVKRLNVAVVLNQNA-------PALKNWKPEQTTQLTALLNNAAGIDAQRGDNLTLSL 415

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           ++F+   +     + +   D +    A V      L+  LL+ F+    ++RL  +    
Sbjct: 416 LNFVPQVVPVEPVIPLWKDDSV---LAWVRLIGCGLLALLLLFFVVRPVMKRLTAVRAP- 471

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
                   +++P P + +     MP +     + +        +L S+ +    K   L+
Sbjct: 472 --------VITPEPEAVSEPWIAMPEEE--RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQ 521

Query: 531 LLHMIEINEERFAKILRKWARSEI 554
            L M + +  R A++LR+W  S  
Sbjct: 522 KLAMSDTD--RVAEVLRQWITSNE 543


>gi|89056671|ref|YP_512122.1| flagellar MS-ring protein [Jannaschia sp. CCS1]
 gi|88866220|gb|ABD57097.1| flagellar M-ring protein FliF [Jannaschia sp. CCS1]
          Length = 583

 Score =  330 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 143/581 (24%), Positives = 242/581 (41%), Gaps = 44/581 (7%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +L+ LL+ +      GR R L++  +  + ++L +  R   + P +  LY  L+ +    
Sbjct: 16  VLNALLEIWNGMN--GRRRGLLIGGIAALAVVLVILTRI-ASQPSFQLLYSGLDPAAAGE 72

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +  AL+   +  RI  +G  I V ++   + R+ LA +GLP++    GYEL D ++ FG 
Sbjct: 73  VVDALAARGVAHRI--DGDQIFVDATQRDELRMALAGEGLPANGPQ-GYELLDSLSGFGT 129

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           TS M +    RA EGE++RTI +   I AARVHI  P    F+      TASV IR  + 
Sbjct: 130 TSQMFDAAYWRAKEGELSRTILASPAIRAARVHIANPSSDPFQPTNEV-TASVAIRPASG 188

Query: 183 SVYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEI 241
            +    A A+R+LVA++VP L   +VTV+D+    +   + +      +      +Q  +
Sbjct: 189 GLAPGHAHALRYLVASSVPGLRPENVTVIDADSGQVLGGQGQMTPAADAAGRATTLQQNV 248

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           E      LAA +G  N    V  EL    + I E V DP+S+V  +    ++   + T  
Sbjct: 249 ER----LLAARVGPSNAVVQVSVELETARETILERVIDPESRVIIATDT-EEMDNASTDG 303

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
             + VTV  N+P           S   T +  E+  ++++        +   + R+++AV
Sbjct: 304 AAAGVTVASNLPD--GDGAAGEGSSAQTTESRERVTFDMSELQREVEREPGDIRRITVAV 361

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           +VN        G +    +  + L  + ++V +A G +  RGD +TI SM F  +    +
Sbjct: 362 LVNGVEEINASGVAETIPRPAAELDALTELVRSAVGYDEARGDIVTIQSMAF--DAAAAT 419

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR------------RLHNIDDA 469
              +  F D L+     ++  L+     L + F  L  L              L   +  
Sbjct: 420 ELTEAGFADRLNLDVGQIVQTLLLAAVALAIAFGLLRPLLARSGGDSLNTLPPLEPTNGL 479

Query: 470 KKGEVGGKSILSPPPISSAVTTGL------MPNDNIALDSSNQDIFSHSRNLQSRINS-- 521
                G  S  +  P +S             P +   L + +Q   +    L   +    
Sbjct: 480 PAPSDGAVSGDTSLPTTSTADVPEITMASTAPKELPPLPAVSQMGSAFDDALPMMMAGSL 539

Query: 522 -------YVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
                          RL  +I+  EE   +ILR W   + E
Sbjct: 540 PGDLEQNLEDMDPVDRLRLLIQEREEETVQILRSWMNEDEE 580


>gi|187778748|ref|ZP_02995221.1| hypothetical protein CLOSPO_02343 [Clostridium sporogenes ATCC
           15579]
 gi|187772373|gb|EDU36175.1| hypothetical protein CLOSPO_02343 [Clostridium sporogenes ATCC
           15579]
          Length = 526

 Score =  330 bits (846), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 104/566 (18%), Positives = 222/566 (39%), Gaps = 56/566 (9%)

Query: 4   LDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           +++L +FFK      T   + + +  + + L  I   +A   +     Y  L+  ++ +D
Sbjct: 1   MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              +   L +  ++ ++   G++I VP   V + R+ + ++ +P ++ + G+E+ DK   
Sbjct: 61  SGAVLQKLKDKKVEAKVE--GNNILVPKDQVDELRMQMLSE-VPLTNGSQGFEILDKSQ- 116

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           FG T    +I   RAL+GE+ RTI+    +  +RVH+V+P+  +F K      ASV +  
Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNSRVHLVLPEETAFVKETQPGRASVTLNL 176

Query: 180 INPSV--YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--------EMERNILGK 229
                   +  ++I  LV+ +V N+   +V V+D+   LLT N        E       K
Sbjct: 177 KKGQTISKEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLTKNLFDASGSLEEATTSAEK 236

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
              + +  + +++  +   L A  G D  +  +  +L+ D  +   + YDP + V     
Sbjct: 237 QQQLQKNYEKDLQNRLVSMLEAVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNVVVSEHS 296

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
           + +  Q +      +   V+ NM    +R        E + + E   NYEI+     +  
Sbjct: 297 IKEKNQNNADGNNTNGSIVDNNM---VNRTTQNNNGSETSSRDETTKNYEISKTQQDSIK 353

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
               ++RL+ ++V++                 +     +  +  +A G + +RGD I+I 
Sbjct: 354 APGSVKRLTASIVLDGN-------------IDEETRTAVRNLAVSAIGYDEKRGDAISIE 400

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
            + F                          +   + L   LL+  +    +++  N ++ 
Sbjct: 401 GLPFDTAAKDKVKKDLEDMQKAEKTKERIKLFTAIGLGVLLLLGAIIFFVIKKRKNDEEY 460

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
           ++ E G                      +I +D S  +     +     + +   K    
Sbjct: 461 EEYEEGL---------------------DILIDDSGSETKQIPKFKPIDLEAQDEKTHVE 499

Query: 530 -RLLHMIEINEERFAKILRKWARSEI 554
             +    +   ++ A+I++ W   + 
Sbjct: 500 NEIRKYAKDKPDQVAEIIKSWLAEDE 525


>gi|260866399|ref|YP_003232801.1| putative lateral flagellar basal-body M-ring and collar protein
           [Escherichia coli O111:H- str. 11128]
 gi|257762755|dbj|BAI34250.1| predicted lateral flagellar basal-body M-ring and collar protein
           [Escherichia coli O111:H- str. 11128]
 gi|323178508|gb|EFZ64086.1| flagellar M-ring protein FliF [Escherichia coli 1180]
          Length = 548

 Score =  330 bits (846), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 131/564 (23%), Positives = 244/564 (43%), Gaps = 41/564 (7%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L Q    F+   +  +   L+    + V     + +  +  +  Y +LY + E   V++I
Sbjct: 8   LTQAFPAFRLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQI 67

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    + +RI      I VP   + K R+ LAA+G+  +   SGYEL DK    G  
Sbjct: 68  VTVLDGEKLTYRIDPQSGQILVPEEALSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSR 126

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINP 182
            F+Q +   R+LEGE+A++I S+  + +ARVH+ + +  SF      + +ASV++R    
Sbjct: 127 QFVQNVRYKRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYG 186

Query: 183 SVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQA 236
           +        AI HLV+ ++P L    V+V+D +G LLT    A E       K   I++ 
Sbjct: 187 AKLNMDQVNAIVHLVSGSIPGLHASKVSVVDQSGNLLTDGIGAGEAVSAATRKRDQILKD 246

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           IQ +   ++   L + +G  N+R +V+ +L++ T    +  Y    K+ R     +    
Sbjct: 247 IQDKTHASVANVLDSLVGSGNYRVSVMPDLDLSTIDETQEHYGDAPKINR----EESVLD 302

Query: 297 SETSQPE-SAVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHD 350
           S+T+Q          N P V+  ++             +   E + +Y  +       H 
Sbjct: 303 SDTNQVAMGVPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHP 362

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
            + ++RL++AVV+N+          A +       A++  +++ A GI+++RGD +T++ 
Sbjct: 363 GFAVKRLNVAVVLNQNA-------PALKNWKPEQTAQLTALLNNAAGIDAQRGDNLTLSL 415

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           ++F+   +     + +   D +    A V      L+  LL+ F+    ++RL  +    
Sbjct: 416 LNFVPQAVPVEPIIPLWKDDSV---LAWVRLIGCGLLALLLLFFVVRPVMKRLTAVR--- 469

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
                        P S AV+   +        + +        +L S+ +    K   L+
Sbjct: 470 --------APIITPESEAVSEPWIAMPEEERKNVDLPSLPGDDSLPSQSSGLEVKLEFLQ 521

Query: 531 LLHMIEINEERFAKILRKWARSEI 554
            L M + +  R A++LR+W  S  
Sbjct: 522 KLAMSDTD--RVAEVLRQWITSNE 543


>gi|238752878|ref|ZP_04614343.1| Flagellar M-ring protein [Yersinia rohdei ATCC 43380]
 gi|238708917|gb|EEQ01170.1| Flagellar M-ring protein [Yersinia rohdei ATCC 43380]
          Length = 541

 Score =  330 bits (846), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 127/562 (22%), Positives = 248/562 (44%), Gaps = 32/562 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +L+++ Q   S T +   +  +L     + +   +    + +S  Y  L+   E   V +
Sbjct: 1   MLEKIKQKLSS-TKMDNNQKNLLMGAAAILVTGAIIFSLWRSSQGYTALFGSQENIPVAQ 59

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +   L +  I +RI+ +   + V  + +GKARI LAA+G+ +++   GYEL DK    G 
Sbjct: 60  MVEVLDQEAIAYRINPDNGQVLVAENQLGKARILLAAKGI-TATLPVGYELMDKETMLGS 118

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRAIN 181
           + F+Q +   R+LEGE+A++I +++ +  ARVH+ M +  SF     A  +ASV++R   
Sbjct: 119 SQFIQSVRYKRSLEGELAQSIMALTAVDYARVHLGMSEASSFAISNRAESSASVVLRLKY 178

Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQ 235
               K     AI  LVA ++P +   +V V+D  G+LL+    AN      +     +  
Sbjct: 179 GQALKPEQVGAIVQLVAGSMPGIKAANVRVVDQHGELLSEAYQANSSGMPSVKSGADLAH 238

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            +Q   E +I   L++ +G +N+R +V  +L++   +     Y P+       R+S +  
Sbjct: 239 YLQSTTEKSIANLLSSVVGANNYRISVATQLDLSRIEETLERYGPEP------RISDENI 292

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
           + E +  + A+ V  ++ +    +     +     + + Q  Y  +       H  +KL+
Sbjct: 293 QQENNNDDMAMGVPGSLSNQPVAQPGNMTAPTAVSRSQAQRKYTYDRDIRHVRHPGFKLD 352

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           ++++AV++NK          A +      LAE+ +++  A GI+ +RGD++T+  + F  
Sbjct: 353 KMTVAVILNKSA-------PALENWAPEQLAELKRLIEDAAGIDVKRGDSLTLNMLAFTA 405

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
             +     +   + D  +  +A +I   +  +        G+  L +     D +     
Sbjct: 406 PTVMEESVIP-WWQDPTTFRWAEIIGIGLLSLLF---LLFGVRPLMKRLARRDQQLVNSA 461

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
                    I    T      +     SS    F  S NL  + +   +K S L+ L   
Sbjct: 462 SAEESENAGIIETATDSSTSLEQTLSGSS----FQESDNLPPQGSGLETKISHLQKLAQS 517

Query: 536 EINEERFAKILRKWARSEIEDR 557
           E   ER A+++++W  +    +
Sbjct: 518 ET--ERVAEVIKQWINNNERTK 537


>gi|188492056|ref|ZP_02999326.1| flagellar M-ring protein FliF [Escherichia coli 53638]
 gi|188487255|gb|EDU62358.1| flagellar M-ring protein FliF [Escherichia coli 53638]
          Length = 548

 Score =  330 bits (846), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 129/564 (22%), Positives = 243/564 (43%), Gaps = 41/564 (7%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L Q    F+   +  +   L+    + V     + +  + ++  Y + Y + E   V++I
Sbjct: 8   LTQAFPAFRLRLADNKRWALMAGVGLAVAATAIIVSVLWTSNRGYVSFYGRQENLPVSQI 67

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    + +RI      I VP   + K R+ LAA+G+  +   SGYEL DK    G +
Sbjct: 68  VSVLDGEKLTYRIDPQSGQILVPEDELSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSS 126

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINP 182
            F+Q +   R+LEGE+A++I S+  + +ARVH+ + +  SF      + +ASV++R    
Sbjct: 127 QFVQNVRYKRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDVPQNSASVVVRLHYG 186

Query: 183 SVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQA 236
           +        AI HLV+ ++P L    V+V+D  G LLT    A E       K   I++ 
Sbjct: 187 AKLNMDQVNAIVHLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKD 246

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           IQ +   ++   L + +G  N+R +V+ +L++ T    +  Y    K+ R     +    
Sbjct: 247 IQDKTRASVANVLDSLVGTGNYRVSVMPDLDLSTIDETQEHYGDAPKINR----EESVLD 302

Query: 297 SETSQPE-SAVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHD 350
           S+T+Q          N P V+  ++             +   E + +Y  +       H 
Sbjct: 303 SDTNQVAMGVPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHP 362

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
            + ++RL++AVV+N+          A +       A++  +++ A GI+++RGD +T++ 
Sbjct: 363 GFAVKRLNVAVVLNQ-------DAPALKNWKPEQTAQLTALLNNAAGIDAQRGDNLTLSL 415

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           ++F+   +     + +   D +    A V      L+  LL+ F+    ++RL  +    
Sbjct: 416 LNFVPQAVPVEPIIPLWKDDSV---LAWVRLIGCGLLALLLLFFVVRPVMKRLTAVR--- 469

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
                        P   AV+   +        + +        +L S+ +    K   L+
Sbjct: 470 --------APVITPEPEAVSEPWIAMQEEERKNVDLPSLPGDDSLPSQSSGLEVKLEFLQ 521

Query: 531 LLHMIEINEERFAKILRKWARSEI 554
            L M + +  R A++LR+W  S  
Sbjct: 522 KLAMSDTD--RVAEVLRQWITSNE 543


>gi|119385376|ref|YP_916432.1| flagellar MS-ring protein [Paracoccus denitrificans PD1222]
 gi|119375143|gb|ABL70736.1| flagellar M-ring protein FliF [Paracoccus denitrificans PD1222]
          Length = 526

 Score =  330 bits (846), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 132/555 (23%), Positives = 237/555 (42%), Gaps = 34/555 (6%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           A+L +L  +++  ++  R    +LA+  L          +  + P    LY  L+     
Sbjct: 3   AVLLKLQDYWRDRSTKQR---AMLAAAFLFTFAAIAGLSWMASRPGMALLYSGLDPQQSG 59

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            +  A+ ++ + + I   G SI V  S   + R+ LA +GLPS+   SGYE+ D ++ FG
Sbjct: 60  AVMAAVEKSGVPYEIR--GDSIWVAESRRDELRMTLAGEGLPSAGG-SGYEILDGMSGFG 116

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
            TS M +    RA EGE+ARTI ++  + AARVH+ +P    +R+  A  TASV +    
Sbjct: 117 TTSQMFDAAYWRAKEGELARTILALPNVKAARVHLAVPQGRGYRRE-AEATASVTLTTDG 175

Query: 182 -PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240
            P     A+A++ LV++ VP +    V V+DS   ++++ E             +  + E
Sbjct: 176 TPISRNQAKALKFLVSSGVPGMTADRVAVIDSERGVISSGEDFDG---------EDREAE 226

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           ++ N+ + LAA +G  N    +  ++  +++ + E  +DP  +   S    + A +S  +
Sbjct: 227 MKRNVERILAAHVGHGNAIVELHLDVVNESELLTEQRFDPQERALISQESEESADQSSNA 286

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           Q + AVT   N+P   D      +S  +  +  ++SN+E++  +   T       RL++A
Sbjct: 287 Q-QGAVTAASNLPEGQDSA--GDQSRSSRSETRQRSNFEVSKITREVTRQPGATRRLTVA 343

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           V+VN    TE  G +    + ++ L  I ++V++A G +  RGD IT+ S+ F       
Sbjct: 344 VLVNGVARTEANGEATLVPREETELQAIRELVASAVGFDEGRGDAITVKSLPFASLSQAG 403

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
           +      F+  L  +       +   +       L    LR L     A           
Sbjct: 404 TLASAGGFLSRLDLN-----GLIRIALVGFFALALAAFLLRPLLRSKPAGSPGQAMLDRP 458

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
             PP  +   T   P   +A      D      +               RL  +++  ++
Sbjct: 459 ERPPALAGARTEGAPAPAVANVVPEIDFAPAGTDGSD---------PVGRLKELMKSRKD 509

Query: 541 RFAKILRKWARSEIE 555
              +IL  W     +
Sbjct: 510 ESLQILSGWIEKRED 524


>gi|300817286|ref|ZP_07097504.1| flagellar M-ring protein FliF [Escherichia coli MS 107-1]
 gi|300530262|gb|EFK51324.1| flagellar M-ring protein FliF [Escherichia coli MS 107-1]
          Length = 548

 Score =  330 bits (845), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 130/564 (23%), Positives = 247/564 (43%), Gaps = 41/564 (7%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L Q    F+   +  +   L+    + V     + +  +  +  Y +LY + E   V++I
Sbjct: 8   LTQAFPAFRLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQI 67

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    + +RI      I VP   + K R+ LAA+G+  +   SGYEL DK    G +
Sbjct: 68  VTVLDGEKLTYRIDPQSGQILVPEEALSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSS 126

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINP 182
            F+Q +   R+LEGE+A++I S+  + +ARVH+ + +  SF      + +ASV++R    
Sbjct: 127 QFVQNVRYKRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRMHYG 186

Query: 183 SVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQA 236
           +        AI HLV+ ++P L    V+V+D  G LLT    A E       K   I++ 
Sbjct: 187 AKLNMDQVNAIVHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKD 246

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           IQ +   ++   L + +G  N+R +V+ +L++ T    +  Y    K+ R     +    
Sbjct: 247 IQDKTRASVANVLDSLVGTGNYRVSVMPDLDLSTIDETQEHYGDAPKINR----EESVLD 302

Query: 297 SETSQPE-SAVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHD 350
           S+T+Q          N P V+  ++             +   E + +Y  +       H 
Sbjct: 303 SDTNQVAMGVPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHP 362

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
            + ++RL++AVV+N+          A +        ++  +++ A GI+++RGD +T++ 
Sbjct: 363 GFAVKRLNVAVVLNQNA-------PALKNWKPEQTTQLTALLNNAAGIDAQRGDNLTLSL 415

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           ++F+   +     + +   D +    A V      L+  LL+ F+    ++RL  +    
Sbjct: 416 LNFVPQVVPVEPVIPLWKDDSV---LAWVRLIGCGLLALLLLFFVVRPVMKRLTAVRAP- 471

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
                   +++P P + +     MP +     + +        +L S+ +    K   L+
Sbjct: 472 --------VITPEPEAVSEPWIAMPEEEC--KNVDLPSLPGDDSLPSQSSGLEVKLEFLQ 521

Query: 531 LLHMIEINEERFAKILRKWARSEI 554
            L M + +  R A++LR+W  S  
Sbjct: 522 KLAMSDTD--RVAEVLRQWITSNE 543


>gi|312879583|ref|ZP_07739383.1| flagellar M-ring protein FliF [Aminomonas paucivorans DSM 12260]
 gi|310782874|gb|EFQ23272.1| flagellar M-ring protein FliF [Aminomonas paucivorans DSM 12260]
          Length = 524

 Score =  330 bits (845), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 127/571 (22%), Positives = 217/571 (38%), Gaps = 64/571 (11%)

Query: 1   MAILDQLLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           M  + Q  ++ K+   SL R + L L     + +   +    +   P Y+ L+  LEV D
Sbjct: 1   MDKIRQFGEWLKAFWGSLQRWQKLSLVGASALVLCSLVLLVVWAGRPAYEPLFSGLEVED 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I   L E  I FR     ++I +P   V + R+ LA QGLP      G+ELFD+   
Sbjct: 61  QASIVAYLKEQKIPFRNDPAANAILLPREKVYETRLALAQQGLPKGGV-VGFELFDQ-PK 118

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
            G++ F Q++   RALEGE+ARTI  I  +  ARV+IV+P+   F +     TASV++R 
Sbjct: 119 MGMSDFQQKVAYSRALEGELARTIGQIEAVKFARVNIVIPEQRLFLEQQQPSTASVLVRL 178

Query: 180 INPSV--YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----------ANEMERNI 226
                   +  + I HLVA +V  L+  DVTV+D+ GK+L+           +    R +
Sbjct: 179 KEGQEIGQEQVKGIVHLVARSVEGLNPEDVTVVDTAGKVLSDLIQDDSLIYMSGSDGRAV 238

Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS---K 283
                 + +  + E+E  +   L    G       V  +L+ D +      + P      
Sbjct: 239 SSVQRELERQQEQELERKVRLMLEKVFGPGKAVVRVRVDLDFDKKSTSRKEFIPGPNGKG 298

Query: 284 VERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTK 343
           V RS + ++++       P  A     N+P                ++ +  +N++I T+
Sbjct: 299 VVRSQQNTEESYVGPGMPPGGAPGTTTNIPGYVVNTGTGGNV--EYNRTDTVTNFDITTQ 356

Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403
                     + RLS +V+V+                       +   V+AA G N  RG
Sbjct: 357 ESQQVATPGAIRRLSASVLVDG-------------TLNAQQTQSLKDSVAAAIGFNQLRG 403

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
           D + I  M F             +               L+ ++G  +  ++        
Sbjct: 404 DQLVIQGMKFDTTLADQLLAQMEAEQRQKVILALVGAALLLLIMGAGIFLWI-------- 455

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                                   A    LMP +      S +D+  H   + S+    +
Sbjct: 456 -------------------RRRRLAALRRLMPKEEGDQVPSLKDLLEHPELMTSQGELAI 496

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEI 554
            ++   +L      N E  A +++ W   ++
Sbjct: 497 LEE---QLRVYATNNPEEVANLIKNWLAEDL 524


>gi|113969625|ref|YP_733418.1| flagellar MS-ring protein [Shewanella sp. MR-4]
 gi|114046855|ref|YP_737405.1| flagellar MS-ring protein [Shewanella sp. MR-7]
 gi|113884309|gb|ABI38361.1| flagellar M-ring protein FliF [Shewanella sp. MR-4]
 gi|113888297|gb|ABI42348.1| flagellar M-ring protein FliF [Shewanella sp. MR-7]
          Length = 561

 Score =  330 bits (845), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 108/561 (19%), Positives = 224/561 (39%), Gaps = 31/561 (5%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +       S   +   R + +   + + + L +    +   P Y  L  K+E  ++ ++ 
Sbjct: 17  ENKSGVLGSLGGVDMMRQITMILALAICLALAVFVMIWAQEPEYRPL-GKMETQEMVQVL 75

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L +  I ++I  +   + VP     + ++ L+  G+ S++++S  +   + + FG++ 
Sbjct: 76  DVLDKNKIKYQIDVD--VVKVPEDKYQEVKMMLSRAGIDSAAASS-KDFLTQDSGFGVSQ 132

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
            M++     + E  +AR I+ +  +  A+V + +P    F +  A+P+A+V+I      +
Sbjct: 133 RMEQARLKHSQEENLARAIEQLQSVSRAKVILALPKENVFARNTAQPSATVVINTRRGGL 192

Query: 185 -YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEI 241
                +AI  +VA+AV  L+   VTV DS G+LL +   +       + L +VQ  + E 
Sbjct: 193 GQGEVDAIVDIVASAVQGLEPSRVTVTDSNGRLLNSGSQDGVSARARRELELVQQKEAEY 252

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
              I+  L+  LG DNF S V   ++    +     ++PD    RS    ++   S    
Sbjct: 253 RTKIDSILSPILGPDNFTSQVDVSMDFTAVEQTAKRFNPDLPSLRSEMTVENN--STGGS 310

Query: 302 PESAVTVEQNMPHVSDRKV-----PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
                    N P +                     +E   N+E++T    T      + R
Sbjct: 311 TGGIPGALSNQPPMESNIPQEADKATESVTAGNSHREATRNFELDTTISHTRQQIGVVRR 370

Query: 357 LSIAVVVN-KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           +S++V V+ K       G+ A   + +  L  I +++  A G +++RGD + + ++ F++
Sbjct: 371 VSVSVAVDFKPGAAGENGQVARVARTEQELTNIRRLLEGAVGFSAQRGDVLEVVTVPFMD 430

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
             + +    ++       R     + ALV LV  L V       L+RL   D+    E  
Sbjct: 431 QLVEDVPAPELWEQPWFWRAVKLGVGALVILVLILAV---VRPMLKRLIYPDNVNMPEDS 487

Query: 476 --GKSILSPPPISSAVTTGLM--PNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
             G  +       +A T G++       +       +  +       I +         +
Sbjct: 488 RLGNELAEIEDQYAADTLGMLNTKEAEYSYADDGSILIPNLHKDDDMIKA---------I 538

Query: 532 LHMIEINEERFAKILRKWARS 552
             ++    E   ++++ W + 
Sbjct: 539 RALVANEPELSTQVVKNWLQD 559


>gi|301646796|ref|ZP_07246650.1| flagellar M-ring protein FliF [Escherichia coli MS 146-1]
 gi|307136844|ref|ZP_07496200.1| flagellar MS-ring protein [Escherichia coli H736]
 gi|331640699|ref|ZP_08341846.1| flagellar M-ring protein FliF [Escherichia coli H736]
 gi|301075031|gb|EFK89837.1| flagellar M-ring protein FliF [Escherichia coli MS 146-1]
 gi|315616841|gb|EFU97458.1| flagellar M-ring protein FliF [Escherichia coli 3431]
 gi|331040073|gb|EGI12281.1| flagellar M-ring protein FliF [Escherichia coli H736]
          Length = 548

 Score =  330 bits (845), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 130/564 (23%), Positives = 246/564 (43%), Gaps = 41/564 (7%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L Q    F+      +   L+    + V     + +  +  +  Y +LY + E   V++I
Sbjct: 8   LTQAFPAFRLRLVDNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQI 67

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    + +RI      I VP   + K R+ LAA+G+  +   SGYEL DK    G +
Sbjct: 68  VTVLDGEKLSYRIDPQSGQILVPEDELSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSS 126

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINP 182
            F+Q +   R+LEGE+A++I S+  + +ARVH+ + +  SF      + +ASV++R    
Sbjct: 127 QFVQNVRYKRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYG 186

Query: 183 SVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQA 236
           +        AI HLV+ ++P L    V+V+D  G LLT    A E       K   I++ 
Sbjct: 187 AKLNMDQVNAIVHLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKD 246

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           IQ +   ++   L + +G  N+R +V+ +L++ T    +  Y    K+ R     +    
Sbjct: 247 IQDKTRASVANVLDSLVGSGNYRVSVMPDLDLSTIDETQEHYGDAPKINR----EESVLD 302

Query: 297 SETSQPE-SAVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHD 350
           S+T+Q          N P V+  ++             +   E + +Y  +       H 
Sbjct: 303 SDTNQVAMGVPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHP 362

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
            + ++RL++AVV+N+          A +        ++  +++ A GI+++RGD +T++ 
Sbjct: 363 GFAVKRLNVAVVLNQNA-------PALKNWKPEQTTQLTALLNNAAGIDAQRGDNLTLSL 415

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           ++F+   +     + +   D +    A V      L+  LL+ F+    ++RL  +    
Sbjct: 416 LNFVPQVVPVEPVIPLWKDDSV---LAWVRLIGCGLLALLLLFFVVRPVMKRLTAVRAP- 471

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
                   +++P P + +     MP +     + +        +L S+ +    K   L+
Sbjct: 472 --------VITPEPEAVSEPWIAMPEEE--RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQ 521

Query: 531 LLHMIEINEERFAKILRKWARSEI 554
            L M + +  R A++LR+W  S  
Sbjct: 522 KLAMSDTD--RVAEVLRQWITSNE 543


>gi|126734120|ref|ZP_01749867.1| flagellar M-ring protein FliF, putative [Roseobacter sp. CCS2]
 gi|126716986|gb|EBA13850.1| flagellar M-ring protein FliF, putative [Roseobacter sp. CCS2]
          Length = 526

 Score =  330 bits (845), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 135/544 (24%), Positives = 226/544 (41%), Gaps = 27/544 (4%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
              K  ++L   R +IL  V  V  M  +       +     L+  LE      +  AL 
Sbjct: 3   NLGKVWSALSIQRRIILIVVTGVVFMAVLLLARGAGTKDMSLLFGGLEPRAAGDVVTALD 62

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
           +  + + +   G++I VP+      R+ LA QGLP++ S  GYEL D ++ F  T+ M +
Sbjct: 63  QQGVAYEVR--GNAIYVPTVQRDGLRMALAGQGLPATGSQ-GYELLDSLSGFSTTAQMFD 119

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA 188
               RA EGE+ARTI +   I AARVHI  P    F+   ++  A  +  A      +  
Sbjct: 120 AAYWRAKEGELARTIVASPHIRAARVHISTPSQRPFQAAQSQTAAVTVTMAGTTLSTQHL 179

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKA 248
           +A++ L+ AAVP L   DV V+D  G LL+  +     +             +     + 
Sbjct: 180 KALQFLIGAAVPGLSPADVAVIDDEGGLLSEADTNSAGMNGD-----NHAENLRKRAERL 234

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308
           LAA +GV N    V  +  ++T+ I E   DPDS++  S  +++ +  S  S+    VTV
Sbjct: 235 LAARVGVGNAVVEVSVDQVLETEMITERRVDPDSRIAISTDVTESSGNSTDSR-GGDVTV 293

Query: 309 EQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368
             N+P           S EN++ +   +NYE++      T     + RL++AV+VN    
Sbjct: 294 ASNLPDGDAGARSGSASNENSESR-TLTNYEVSQTERQLTKAPGAIRRLTVAVLVNDLVD 352

Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSF 428
           T   G +    + +  LA +  +V++A G++  RGD +T+ SM F   +   +     + 
Sbjct: 353 TAADGTTTTTPRTEGELAALEDLVASAVGLDVDRGDVLTLRSMPFEPFEPVGTAATGPA- 411

Query: 429 MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSA 488
               +     ++  +   V   +   LGL  +R +     A   ++  +    P  IS  
Sbjct: 412 ----ASLPLDMMQLIQIGVLAAVALILGLFVVRPILASSGASAAQLSIEEQAEPIDISP- 466

Query: 489 VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRK 548
                M  D+ AL     +                      RL  +I   E    ++L+ 
Sbjct: 467 --PMAMAMDDNALGDFIDNGLLGMDADDD---------PVARLKRIIADREPETLQVLQN 515

Query: 549 WARS 552
           W   
Sbjct: 516 WIEE 519


>gi|167037669|ref|YP_001665247.1| flagellar M-ring protein FliF [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|320116084|ref|YP_004186243.1| flagellar M-ring protein FliF [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166856503|gb|ABY94911.1| flagellar M-ring protein FliF [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|319929175|gb|ADV79860.1| flagellar M-ring protein FliF [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 503

 Score =  329 bits (844), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 122/567 (21%), Positives = 222/567 (39%), Gaps = 85/567 (14%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
              +QL  F+       + ++ I+A ++ + I L +   + VN P+Y  LY  L + D  
Sbjct: 7   NFREQLTNFWNKFDKKQKIQLGIIAILLFIGISLLV---YIVNRPNYVVLYSDLSIKDAG 63

Query: 62  RISVALSEA-NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK-VNS 119
            +   L     I ++IS++G++I VP+    + R+ LA +G+P      G+   D   NS
Sbjct: 64  AVVEKLKTEFKIPYKISNDGTTILVPAQYKDEVRMKLATEGIPQG----GFSFQDAMNNS 119

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARPTASVMI 177
              T   +    +  L+ EI  ++++I G+  A V+IV+PD  +F       + TA+VM+
Sbjct: 120 LATTDQERRQKYLYFLQNEIQNSLKTIDGVQDAIVNIVVPDQNAFVLSNTTNQATAAVML 179

Query: 178 RAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIV 234
                        + I   V+ +V  L   +VTV+D+ GK+LTA ++          ++ 
Sbjct: 180 TLKPGVTLSSSQVKGIIDFVSKSVEGLKPENVTVIDNNGKILTAESDTTAENANTQFALQ 239

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIR 289
           + +Q +++ ++   L    G  N        LN D +    I Y P     +  + RSI+
Sbjct: 240 KKVQEDLQNSLQTLLEQVFGPGNVVVRANVTLNFDKKTQDTIEYLPVQGNDNKGIVRSIQ 299

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
             K+  ++  +Q  S      N P V            + ++ E   NYEIN    +   
Sbjct: 300 ELKE--KATGTQGGSPAGTATNNPPVIST---TGNGTSDYNRTEITINYEINQIKTSLVQ 354

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD---TI 406
              K+E +SIAVV+N             Q   +S   +I  +V+ A G     GD    +
Sbjct: 355 AQGKIENISIAVVIN-------------QNLNNSMKQQIADLVTKAAG-----GDSLVQV 396

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
           ++  M F ++ L  +   Q      +  +   ++ ALV   G  L+       +RR    
Sbjct: 397 SVQGMQFNQD-LLKTMQQQAKASKGVPVYVWAILAALVLGGGLFLI------MMRRKKKE 449

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
                 E    + + P                                    I+     +
Sbjct: 450 TSLTTAEQEVLATVEPTYE---------------------------------IDFSDKDE 476

Query: 527 SDLRLLHMIEINEERFAKILRKWARSE 553
              ++  +I+   +   +I+R W   E
Sbjct: 477 KKKQIEKLIKEKPDIVVQIIRTWLNEE 503


>gi|288573030|ref|ZP_06391387.1| flagellar M-ring protein FliF [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288568771|gb|EFC90328.1| flagellar M-ring protein FliF [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 497

 Score =  329 bits (844), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 126/543 (23%), Positives = 225/543 (41%), Gaps = 61/543 (11%)

Query: 26  ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISV 85
             ++ +     +A         ++ L+  LE+ D   I   L E  I +R+    ++I +
Sbjct: 1   MGIVSLVFFGLIALVVLSGRESWEPLFSGLEIQDEASIVAYLKENKIPYRLDPGANAILL 60

Query: 86  PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145
           P   V + R+ LA  GLP      GYE+FD V   G++ F Q+IT VRALEGE+ART+  
Sbjct: 61  PEEHVYEVRLELARAGLPKGGVK-GYEIFDDVQ-MGMSEFQQKITYVRALEGELARTVAQ 118

Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV--YKSAEAIRHLVAAAVPNLD 203
           I  +  A+++IV+P    F +     TASV++R    +    +  +AI HLV+ +V  L 
Sbjct: 119 IDSVEYAKINIVIPQPHLFLEQQQPATASVLVRIHQGASINPEQIKAIVHLVSHSVEGLQ 178

Query: 204 MGDVTVLDSTGKLLT----------ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFL 253
             DVTV+D+ G +L+          ++   R +      + +  + E+E  +   L    
Sbjct: 179 PDDVTVVDTDGNVLSDLIEDDMFIYSDGAGRTVSSVQRELERQQEKEMERKVRAMLERVF 238

Query: 254 GVDNFRSAVVAELNMDTQQIREIVYDPDSK---VERSIRLSKDAQRSETSQPESAVTVEQ 310
           G  +    +  +L++D ++     Y P      V RS + ++++          A     
Sbjct: 239 GPGSVVVRIKVDLDLDKKRNASTQYIPGPTGKGVVRSEQNTEESYVGPGGPTGGAPGTTT 298

Query: 311 NMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTE 370
           N+P  +         +   +K +  +NYEI T           + RL+ +V+V+      
Sbjct: 299 NIPGYA--IDTGAGGVGEYNKTDTVTNYEITTHESENVETPGSIRRLTASVLVDGD---- 352

Query: 371 VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMD 430
                      +  L +I  +V+ A G++S RGD I I SM F             +  +
Sbjct: 353 ---------LSEEQLEDIRALVAPAIGLDSGRGDQIAIQSMKFSTTLADRMAEQLAA--E 401

Query: 431 ILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVT 490
              +  A V    + L+   L  F+     RR  ++D A++ E  G+             
Sbjct: 402 RRQKIVAAVTLLGILLILLALALFMWYRRRRRRKSLDAARRAEDAGQVP----------- 450

Query: 491 TGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
                        S QD+ S    ++++    V ++   ++ +    N E FA  +R+W 
Sbjct: 451 -------------SLQDLLSSPGAMEAQGELAVLEE---QIRNYALNNPEEFAAFIREWI 494

Query: 551 RSE 553
             +
Sbjct: 495 VED 497


>gi|28899023|ref|NP_798628.1| flagellar MS-ring protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|153836977|ref|ZP_01989644.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AQ3810]
 gi|260365231|ref|ZP_05777788.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus K5030]
 gi|260878781|ref|ZP_05891136.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AN-5034]
 gi|260897376|ref|ZP_05905872.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus Peru-466]
 gi|260899935|ref|ZP_05908330.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AQ4037]
 gi|4322017|gb|AAD15920.1| polar flagellar M-ring protein FliF [Vibrio parahaemolyticus]
 gi|28807242|dbj|BAC60512.1| polar flagellar M-ring protein FliF [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149749750|gb|EDM60495.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AQ3810]
 gi|308088295|gb|EFO37990.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus Peru-466]
 gi|308094213|gb|EFO43908.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AN-5034]
 gi|308107383|gb|EFO44923.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AQ4037]
 gi|308115404|gb|EFO52944.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus K5030]
 gi|328474440|gb|EGF45245.1| flagellar MS-ring protein [Vibrio parahaemolyticus 10329]
          Length = 580

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 104/554 (18%), Positives = 237/554 (42%), Gaps = 36/554 (6%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
               L R  +L+L+  I V +++ +   F+V  P    L    +  ++  +   L +  I
Sbjct: 47  GDLDLLRQVVLVLSISICVALIVMLF--FWVKEPEMRPLGA-YDTEELIPVLDYLDQQKI 103

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
           ++++  +G+++SV SS     ++ +   G+ + ++ +G ++  +   FG++  +++    
Sbjct: 104 NYKL--DGNTVSVESSEYNSIKLGMVRSGV-NQATEAGDDILLQDMGFGVSQRLEQERLK 160

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEA 190
            + E ++A+ I+ +  +  ARV + +P    F +     +ASV +     +  K    ++
Sbjct: 161 LSRERQLAQAIEEMKQVRKARVLLALPKHSVFVRHNQEASASVFLTLSTGANLKQQEVDS 220

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKA 248
           I  +VA+AVP +    +TV D  G+LL++   +       K   + ++ +  +   I+  
Sbjct: 221 IVDMVASAVPGMKTSRITVTDQHGRLLSSGSQDPASAARRKEQELERSQEQALREKIDSV 280

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------T 299
           L   LG  N+ + V  +++    +     +DP++   RS    +D              +
Sbjct: 281 LLPILGFGNYTAQVDIQMDFSAVEQTRKRFDPNTPSTRSEYALEDYNNGNMVAGIPGALS 340

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           +QP +  ++ Q++  + D  V    S+    +KE   N+E++T           + R ++
Sbjct: 341 NQPPADASIPQDVAQMKDGSVMGQGSV----RKESTRNFELDTTISHERKQTGTVARQTV 396

Query: 360 AVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           +V + ++ ++    G        +  +  I +++    G +  RGD + + S+ F E + 
Sbjct: 397 SVAIKDRRQVNPDTGEVTYTPMSEGEINAIRQVLIGTVGFDQSRGDLLNVLSVKFAEPET 456

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
                  +      +       +ALV +V  L++      A+++L N       E+ G  
Sbjct: 457 EQLVDQPIWEHPNFNDWVRWFASALVIIVVVLVLV---RPAMKKLLNPAGDDDDEMYGPD 513

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
            L   PI +   T L+ +D   ++SS    F  S +L    N +  +     +  ++   
Sbjct: 514 GL---PIGADGETSLIGSD---IESSELFEFGSSIDLP---NLHKDEDVLKAVRALVANE 564

Query: 539 EERFAKILRKWARS 552
            E  A++++ W   
Sbjct: 565 PELAAQVVKNWMNE 578


>gi|289523574|ref|ZP_06440428.1| flagellar M-ring protein FliF [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503266|gb|EFD24430.1| flagellar M-ring protein FliF [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 490

 Score =  328 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 127/528 (24%), Positives = 211/528 (39%), Gaps = 71/528 (13%)

Query: 45  SPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPS 104
              Y+ L+  L+V D   I   L E+NI +R+  + ++I VP  +V + R+ L  +GLP 
Sbjct: 20  RERYEPLFSNLDVEDQAAIVNYLKESNIPYRVDPSFNAILVPRDVVYETRLSLVGEGLPR 79

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
             +  G+ELFDK    G+T F Q++  +RALEGE+ RTIQSI G+ + +V+IV+P+   F
Sbjct: 80  GGA-VGFELFDK-MKMGMTDFQQKVGYLRALEGELTRTIQSIRGVQSCKVNIVIPEQKLF 137

Query: 165 RKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM 222
            +     TASV++          +  +AI HLV+ +V  L   +V V+DS G +L+    
Sbjct: 138 LEEQFPATASVLLSLKPGFEMGPEQVKAIVHLVSHSVEGLSPDNVVVVDSKGAILSDMLD 197

Query: 223 ER-------NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           E         +      + +  + E+E    + L    G       V   LN D ++   
Sbjct: 198 ESYFVLRNETVTSVQREMERQQELELERKARQMLERIFGPGKAVVRVRVFLNFDRRRTST 257

Query: 276 IVYDPDS---KVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332
             + P      V RS +  ++        P  A     N+P       P      + ++ 
Sbjct: 258 REFVPGPSGRGVPRSDQSLEETYTGPGIPPGGAPGTTTNIPGYV--ITPQTAGPSSYERT 315

Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV 392
           E  +NYEI T+     +    +E+++ +V+V+                    L  + + V
Sbjct: 316 ETTTNYEITTREQEVVYTPGGVEKITASVLVDGQ-------------LEQQMLNSLRQAV 362

Query: 393 SAATGINSRRGDTITITSMDF--LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL 450
           +AA GIN  RGD + + SM F  +E         +     IL+   A +I   V      
Sbjct: 363 AAAIGINEERGDELYVASMPFSAMEVPAVALAPSRRWLWIILAVLLALLICGGVIFF--- 419

Query: 451 LVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFS 510
                       L      +K E          P                   S +++  
Sbjct: 420 ------------LRKKRKEEKPETAPAREEEGIP-------------------SLEELLK 448

Query: 511 HSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIEDRY 558
               L+ +    V +Q   +L        E  A I++ W    +ED+Y
Sbjct: 449 RPELLKEKGELAVLEQ---QLREYASKKPEEIAAIIKNWL---LEDQY 490


>gi|149908457|ref|ZP_01897120.1| flagellar biosynthesis; basal-body MS(membrane
           andsupramembrane)-ring and collar protein [Moritella sp.
           PE36]
 gi|149808620|gb|EDM68555.1| flagellar biosynthesis; basal-body MS(membrane
           andsupramembrane)-ring and collar protein [Moritella sp.
           PE36]
          Length = 569

 Score =  328 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 101/560 (18%), Positives = 217/560 (38%), Gaps = 29/560 (5%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +Q    F   T+    R +IL   + + + L +    +   P    L      +++    
Sbjct: 27  EQKSSAFGFFTNADILRQIILILALAISLTLVVFILLWGKEPEMRPLGT-YPTAELIETL 85

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L +  ID+ I  NG ++SV +      ++ L   GL +++   G ++  +   FG++ 
Sbjct: 86  DFLDQEKIDYTI--NGDTVSVSAEQYQNIKLRLRRSGL-TTTELQGDDILMQDMGFGVSQ 142

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
            ++        E +IAR ++    +  A+V + +P    F K   +P+A+V++   N + 
Sbjct: 143 RVERERLKLGRERQIARALEEFKQVSKAQVLLAIPKENVFAKRNKKPSATVVLTVRNSAA 202

Query: 185 YKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHE 240
                 +++  LVA+AV  L+   VT+ D  G+LL +   +       +   +V+  + E
Sbjct: 203 LSQENIDSMVQLVASAVQGLEPTRVTLTDQNGRLLNSGSQDMLAAKGRREFEMVKNHERE 262

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I+  L   LGV N+ + V   ++    +  +  ++PD    RS  L +  ++S  +
Sbjct: 263 YRTKIDSILMPILGVSNYTAEVDVSMDFSVTEQTQKRFNPDLPAVRSEMLLE--RQSFGN 320

Query: 301 QPESAVTVEQNMPHVSDR------KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
             +       N P +                     +KE   NYE++T    T      +
Sbjct: 321 GNQGIPGALTNQPPLDADIPEEADAGNAAAGPIGQSQKESTRNYELDTTISHTKSQTGVI 380

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           +RLS++V ++        G    + +  + +A I +++    G N  RGD + + ++ F 
Sbjct: 381 QRLSVSVAIDYINSVGADGALVREPRSQAEIANIRRVLQGGIGFNVNRGDNLEVVAIPFN 440

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
             +L     + +   +   R    +  A   LV  +L+  +    ++RL N +  +  E 
Sbjct: 441 RPELTAMTDLPIWEEEWFWR---AIRIAASLLVIVVLIIAIIRPMIKRLINNEPEENLED 497

Query: 475 GGKSILSPPPISS-AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
               I +        + T     D      S      +    +  + +         +  
Sbjct: 498 LDLGISAIENDEDMQLLTADTEGDTDFAMRSGHLQLPNLHKDEDLLEA---------VRA 548

Query: 534 MIEINEERFAKILRKWARSE 553
           ++    +  A ++++W   +
Sbjct: 549 LVANEPDLTALVIKEWMIED 568


>gi|256750740|ref|ZP_05491625.1| flagellar M-ring protein FliF [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256750323|gb|EEU63342.1| flagellar M-ring protein FliF [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 503

 Score =  328 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 123/567 (21%), Positives = 218/567 (38%), Gaps = 85/567 (14%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
              +QL  F+       + ++ I+A ++ + I L +   + VN P+Y  LY  L + D  
Sbjct: 7   NFREQLTDFWNKFDKKQKIQLGIIAILLFIGISLLV---YLVNRPNYVVLYSDLSIKDAG 63

Query: 62  RISVALSEA-NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK-VNS 119
            +   L     I ++IS++G++I VP     + R+ LA +G+P      G+   D   NS
Sbjct: 64  AVVEKLKTEFKIPYKISNDGTTILVPVQYKDEVRMKLATEGIPQG----GFSFQDAMNNS 119

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARPTASVMI 177
              T   +    +  L+ EI  ++++I G+  A V+I +PD  +F       + TA+VM+
Sbjct: 120 LATTDQERRQKHLYFLQNEIQNSLKTIDGVQDAIVNIAVPDQNAFVLSNTTNQATAAVML 179

Query: 178 RAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIV 234
                        + I   V+ +V  L   +VTV+D+ GK+LTA             ++ 
Sbjct: 180 TLKPGVTLSSSQVKGIIDFVSKSVEGLKPENVTVIDNNGKILTAESDSTAENANTQFTLQ 239

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIR 289
           + +Q +++ +I   L    G  N        LN D +    I Y P     +  + RSI+
Sbjct: 240 KKVQEDLQNSIQTLLEQVFGPGNVVVRANVTLNFDKKTQDTIEYLPVQGNDNKGIVRSIQ 299

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
             K+  ++  +Q  S      N P V            + ++ E   NYEIN    +   
Sbjct: 300 ELKE--KATGTQGGSPAGTATNNPPVIST---TGNGTSDYNRTEITINYEINQIKTSLVQ 354

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD---TI 406
              K+E +SIAVVVN             Q   +S   +I  +V+ A G     GD    +
Sbjct: 355 AQGKIENISIAVVVN-------------QNLNNSMKQQIADLVTKAAG-----GDSLVQV 396

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
           ++  M F ++ L  +   Q      +  +   ++ ALV   G  L+       +RR    
Sbjct: 397 SVQGMQFNQD-LLKTMQQQAKASKGVPVYVWAILAALVLGGGLFLI------MMRRKKKE 449

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
                 E    + + P                                    I+     +
Sbjct: 450 TSLTTAEQEVLATVEPTYE---------------------------------IDFSDKDE 476

Query: 527 SDLRLLHMIEINEERFAKILRKWARSE 553
              ++  +I+   +   +I+R W   E
Sbjct: 477 KKKQIEKLIKEKPDIVVQIIRTWLNEE 503


>gi|254478876|ref|ZP_05092240.1| flagellar M-ring protein FliF [Carboxydibrachium pacificum DSM
           12653]
 gi|214035189|gb|EEB75899.1| flagellar M-ring protein FliF [Carboxydibrachium pacificum DSM
           12653]
          Length = 506

 Score =  328 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 119/564 (21%), Positives = 220/564 (39%), Gaps = 76/564 (13%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
              +QLL F+       + ++ ++A ++ + I L +   +  N P+Y  LY  L + D  
Sbjct: 7   NFREQLLNFWNKFDKKQKIQLTVIAILVFISISLLV---YIANRPNYVVLYSNLSLKDAG 63

Query: 62  RISVALSEA-NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK-VNS 119
            +   L     + +++SDNG++I VP+    + R+ LA +G+P      G+   D   NS
Sbjct: 64  IVVEKLKSEFKVPYKLSDNGTTILVPAQYKDEIRMKLATEGIPQG----GFSFQDAMNNS 119

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARPTASVMI 177
              T   +    +  ++ EI  ++++I G+  A V+IV+PD  +F       + TA+VM+
Sbjct: 120 LSTTDQERRQKYLYFVQNEIQNSLKTIEGVQDAVVNIVVPDQNAFVLSNTTNQATAAVML 179

Query: 178 RAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIV 234
                +       + I   V+ +V  L   +VTV+DSTGK+LT              ++ 
Sbjct: 180 TLKPGATLTPSQVKGIIDFVSKSVEGLKPENVTVIDSTGKILTPESDSIAENASNQFALQ 239

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIR 289
           + +Q +++ ++   L    G  N        LN D +    I Y P     +  + RS++
Sbjct: 240 KKVQEDLQNSLQTLLEQVFGPGNVVVRANVRLNFDKKTEDRIEYTPVQGNDNKGIVRSVQ 299

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
             K+  ++  +Q  S        P           +  + DK E   NYEIN        
Sbjct: 300 ELKE--KATGTQNGSPTGTASTTPPGGGALSTQSNNTSSYDKTETTINYEINQIKTTLVE 357

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
              K+E +S+AVVVNK                 S   +I  +V+ A G N+     +++ 
Sbjct: 358 AQGKIESISVAVVVNK-------------PLNASMQQQIADLVANAAGGNNV---KVSVQ 401

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
            + F ++ L  +   Q      +  +   +I AL   VG  LV FL +   +    I  A
Sbjct: 402 GIPFNQD-LLKAMQAQKKVAQGMPLYLWGIIAALA--VGGGLVAFLMIRRRKTKEVIPPA 458

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
           ++  +     +    I+                                       +   
Sbjct: 459 EEEVLATAEPVEEIVIT------------------------------------EKDEKKK 482

Query: 530 RLLHMIEINEERFAKILRKWARSE 553
           ++  +I    +   +++R W   E
Sbjct: 483 QIEKLIREKPDIVVQLIRTWLNEE 506


>gi|15895431|ref|NP_348780.1| flagellar MS-ring protein [Clostridium acetobutylicum ATCC 824]
 gi|15025155|gb|AAK80120.1|AE007716_9 Flagellar basal body M-ring protein FliF [Clostridium
           acetobutylicum ATCC 824]
 gi|325509577|gb|ADZ21213.1| flagellar MS-ring protein [Clostridium acetobutylicum EA 2018]
          Length = 544

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 111/579 (19%), Positives = 213/579 (36%), Gaps = 64/579 (11%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            +L+ L         + + + ++   +++  I   +          Y  L+ KL+ SD  
Sbjct: 3   KLLESLKNLRNKWGEISKRKKIVFLIIVVAIIASLVVFLVSTTRTKYAVLFSKLDSSDAA 62

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV-NSF 120
            +   L    I  +   + ++I VP++ V K R+  A         ++G+ELFD   N F
Sbjct: 63  TVISKLDSDKIAHKEDSSTNTIYVPAADVDKLRLQYATN---LKGGSTGFELFDNSANKF 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           G T     +   RAL+GE+ RTI++   I  ARVH+VM +  +F K     +ASV ++  
Sbjct: 120 GTTDSEFNVEYQRALQGELERTIKNFDEISDARVHLVMSEDSAFVKDSTPASASVTVKMK 179

Query: 181 NPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN----------EMERNILG 228
                     +AI  LV+ +V NL   +V V+D    LL+ +              +   
Sbjct: 180 AGETLSKDQVKAIISLVSGSVKNLPKENVQVVDDKMALLSKDLYNSKGKDDSSDTTDSAE 239

Query: 229 KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY--------DP 280
               +   ++ E+E     +L +  G    +  + A+LN D Q+     Y        DP
Sbjct: 240 NRNKMESNVESELEKKALDSLESIYGKGKVKVKINADLNFDAQETNSQTYYDNKGNPNDP 299

Query: 281 DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEI 340
            +    S    +       S   S +    N        +    S   +  K+  +NY++
Sbjct: 300 KNPTIVSQHSQESTNSQPQSTSSSPLDNNTN-----SNTIANNNSNSTSSSKDVTTNYDV 354

Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400
           ++++  T      + RL+I+V+V+     +                 +  +VS A G N 
Sbjct: 355 SSETNKTVKAPGDVRRLTISVIVDGKINGDTQST-------------LTNVVSNAVGYNQ 401

Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMD---ILSRHFATVINALVFLVGTLLVTFLGL 457
           +RGDTI++  + F       +        D     ++    +  A+   V  L +    +
Sbjct: 402 QRGDTISVEGLPFDNTAETEAKKALKEMQDAQNAANKQKMYMAIAIGAGVLALAIITFVV 461

Query: 458 HALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS 517
             +RR     D ++ +    S                   N+ +   ++   S ++    
Sbjct: 462 IMIRRRKQAADEEEFDEDLDS-----------------TQNLDVVVGDEIKKSKTKFAPI 504

Query: 518 RINSYVSKQSD--LRLLHMIEINEERFAKILRKWARSEI 554
                  +Q+     +        E+   I++ W  +E 
Sbjct: 505 DFEGEEDEQTHIEKEIKKYASTKPEQVVDIVKAWLTNEE 543


>gi|51597648|ref|YP_071839.1| flagellar MS-ring protein [Yersinia pseudotuberculosis IP 32953]
 gi|51590930|emb|CAH22586.1| putative flagellar M-ring protein [Yersinia pseudotuberculosis IP
           32953]
          Length = 546

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 127/560 (22%), Positives = 247/560 (44%), Gaps = 29/560 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +LD++ Q F  G  LG    +IL S   + +   +    + +S  Y  L+   E   + +
Sbjct: 1   MLDKIKQKFSPG-QLGENTKIILMSAAALLVTAAIIFSLWRSSQGYTALFGSQENIPITQ 59

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +   L    I +RI+ +   + V  + +GKARI LAA+G+ +++   GYEL DK +  G 
Sbjct: 60  VVEVLEGEAIAYRINPDNGQVLVAENQLGKARILLAAKGI-TATLPIGYELMDKESMLGS 118

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRAIN 181
           + F+Q +   R+LEGE+A+++ ++S +  ARVH+ M +  SF     A  +ASV++R   
Sbjct: 119 SQFIQNVRYKRSLEGELAQSMMALSAVEYARVHLGMSEASSFAISNHADNSASVVLRLRY 178

Query: 182 PSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQ 235
                 +   AI  LVA ++P +   +V V+D  G+LL+    AN      +     +  
Sbjct: 179 GQTLSTEQVGAIVQLVAGSIPGMKPANVRVVDQHGELLSQAYQANSEGVPSVKSGTELAH 238

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            +Q   E NI   L + +G +N+R +V  +L+M   +     Y PD       R++ +  
Sbjct: 239 YLQSTTEKNIANLLNSVIGANNYRISVSTQLDMSRIEETAEHYGPDP------RINDENI 292

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
           + E S  + A+ +  ++ +    +    ++     + + Q  Y  +       +  YKLE
Sbjct: 293 QQENSNDDMAMGIPGSLSNQPIPQSQAGQTPAAVSRSQAQRKYIYDRNIRHVRYPGYKLE 352

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           ++++AVV+NK            +        E+ +++  A GI+ +RGD++TI  M F  
Sbjct: 353 KMTVAVVLNKS-------LPVLEQWTPEQQEELKRLIEDAAGIDVKRGDSLTINMMAFAV 405

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
             L +   +         R    +   L+ L+  L         L + ++   ++   + 
Sbjct: 406 PTLIDEPVMPWWQEPSTFRWAELLGIGLLSLLVLLFGV----RPLMKRYSRKGSENLPLA 461

Query: 476 GKSILSPPPISSAVTTGLMPNDNI-ALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
             S  +   +    T       +    ++ +      S +L  + +   +K +   L  +
Sbjct: 462 ISSASADEALDHVDTGVDGAESSPRTENAFSASSLWKSDDLPEQGSGLETKIAH--LQQL 519

Query: 535 IEINEERFAKILRKWARSEI 554
            +   ER A+++++W  S  
Sbjct: 520 AQSETERTAEVIKQWINSNE 539


>gi|20807889|ref|NP_623060.1| flagellar biosynthesis/type III secretory pathway lipoprotein
           [Thermoanaerobacter tengcongensis MB4]
 gi|20516454|gb|AAM24664.1| Flagellar biosynthesis/type III secretory pathway lipoprotein
           [Thermoanaerobacter tengcongensis MB4]
          Length = 503

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 121/564 (21%), Positives = 225/564 (39%), Gaps = 79/564 (14%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
              +QLL F+       + ++ ++A ++ + I L +   +  N P+Y  LY  L + D  
Sbjct: 7   NFREQLLNFWNKFDKKQKIQLTVIAILVFISISLLV---YIANRPNYVVLYSNLSLKDAG 63

Query: 62  RISVALSEA-NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK-VNS 119
            +   L     + +++SDNG++I VP+    + R+ LA +G+P      G+   D   NS
Sbjct: 64  IVVEKLKSDFKVPYKLSDNGTTILVPAQYKDEIRMKLATEGIPQG----GFSFQDAMNNS 119

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARPTASVMI 177
              T   +    +  ++ EI  ++++I G+  A V+IV+PD  +F       + TA+VM+
Sbjct: 120 LSTTDQERRQKYLYFVQNEIQNSLKTIEGVQDAIVNIVVPDQNAFVLSNTTNQATAAVML 179

Query: 178 RAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIV 234
                +       + I   V+ +V  L   +VTV+DSTGK+LT              ++ 
Sbjct: 180 TLKPGATLTPSQVKGIIDFVSKSVEGLKPENVTVIDSTGKILTPESDSIAENASNQFALQ 239

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIR 289
           + +Q +++ ++   L    G  N        LN D +    I Y P     +  + RS++
Sbjct: 240 KKVQEDLQNSLQTLLEQVFGPGNVVVRANVRLNFDKKTEDRIEYTPVQGNDNKGIVRSVQ 299

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
             K+  ++  +Q  S      N P V +++     +  + DK E   NYEIN        
Sbjct: 300 ELKE--KATGTQSGSPPGQPTNNPPVYNQQ---NNNTSSYDKTETTINYEINQIKTTLVE 354

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
              K+E +S+AVVVNK                 S   +I  +V+ A G N+     +++ 
Sbjct: 355 AQGKIESISVAVVVNK-------------PLNASMQQQIADLVANAAGGNNV---KVSVQ 398

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
            + F ++ L  +   Q      +  +   +I AL   VG  LV FL +   +    I  A
Sbjct: 399 GIPFNQD-LLKAMQAQKKVAQGMPIYLWGIIAALA--VGGGLVAFLMIRRRKTKEVIPPA 455

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
           ++  +     +    I+                                       +   
Sbjct: 456 EEEVLATAEPVEEIVIT------------------------------------EKDEKKK 479

Query: 530 RLLHMIEINEERFAKILRKWARSE 553
           ++  +I    +   +++R W   E
Sbjct: 480 QIEKLIREKPDIVVQLIRTWLNEE 503


>gi|304414645|ref|ZP_07395721.1| flagellar MS-ring protein [Candidatus Regiella insecticola LSR1]
 gi|304283183|gb|EFL91591.1| flagellar MS-ring protein [Candidatus Regiella insecticola LSR1]
          Length = 532

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 116/552 (21%), Positives = 232/552 (42%), Gaps = 38/552 (6%)

Query: 26  ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISV 85
             +    I   +    + +S  Y  L+   E     ++   L   +I +R++ +   I V
Sbjct: 1   MGIAAAMISGAIIFSLWRSSQSYTVLFGSQEQIPTTQVVEVLGSESIPYRVNPDNGQILV 60

Query: 86  PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145
             + +G+AR+ LAA+G+ +++   GYEL DK    G + FMQ +   R+LEGE+A+++ +
Sbjct: 61  AENQLGRARMALAAKGI-TAALPVGYELMDKETMLGSSQFMQNVRYKRSLEGELAQSVMA 119

Query: 146 ISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAIN--PSVYKSAEAIRHLVAAAVPNL 202
           +  +  ARV + M +  SF        +ASV++R         +   AI  LV+ +VP +
Sbjct: 120 LDAVEYARVRLGMSEASSFVITTKPDSSASVILRLKPRHQLTPEQVGAIIQLVSGSVPGM 179

Query: 203 DMGDVTVLDSTGKLLTANEMERNILGKSL----SIVQAIQHEIEMNINKALAAFLGVDNF 258
               V V++  G+LL+      N    +L     + + +Q  +E N+   L   +G +N+
Sbjct: 180 KASQVRVINQNGELLSEGYQNSNNGLSTLKSGPELARKLQLAVEKNVANLLNPIVGANNY 239

Query: 259 RSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDR 318
           R +V  +L++   + +   Y  D       R   +    E+S  E A+ +   + +    
Sbjct: 240 RISVTTQLDLSNIEEKLERYGADP------RTLDENVNQESSSDERAMGIPVTLSNQPAA 293

Query: 319 KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ 378
           K          ++ + Q  +  +       H +YKLE++++A+V+NK         SA +
Sbjct: 294 KNNAQSPSTMLNRSQSQRKFAYDRDIRHVRHPSYKLEKMTVAIVLNK-------AASALE 346

Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFAT 438
                 L E+ ++   A GIN  RGD++T+  + F     +    +         R    
Sbjct: 347 QWTTPQLDELKRLAIDAAGINFDRGDSLTMNLITFTPQTEYEETPLPWWQEPAALRW--- 403

Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE--VGGKSILSPPPISSAVTTGLMP- 495
                   +      + G+  L +    ++              +  P ++A      P 
Sbjct: 404 -AQMGGIGLIAFFFLWFGVRPLIQRVTREEQTSSTSVASPDQPQNLTPETTAAMGDAAPK 462

Query: 496 --NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA--- 550
             ++ +  D   +  F    +L S  +   +K S +++L   E +  R A+++++W    
Sbjct: 463 INDEKVLADVLPKSSFQEEDDLPSPASGLETKISHMQMLAYSETD--RVAEVIKQWINSN 520

Query: 551 ---RSEIEDRYT 559
              R+E++ R +
Sbjct: 521 ERTRAELDTRES 532


>gi|289578434|ref|YP_003477061.1| flagellar M-ring protein FliF [Thermoanaerobacter italicus Ab9]
 gi|289528147|gb|ADD02499.1| flagellar M-ring protein FliF [Thermoanaerobacter italicus Ab9]
          Length = 503

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 119/567 (20%), Positives = 220/567 (38%), Gaps = 85/567 (14%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
              +QL  F+       + ++ ++A ++ + + L +   + VN P+Y  LY  L + D  
Sbjct: 7   NFREQLTNFWNKFDKKQKMQLGVIAILLFIGVSLLV---YIVNRPNYVVLYSDLSIKDAG 63

Query: 62  RISVALSEA-NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK-VNS 119
            +   L     + ++IS++G +I VP+    + R+ LA +G+P      G+   D   NS
Sbjct: 64  VVVEKLKTEFKVPYKISNDGKTILVPAQYKDEVRMKLATEGIP----EGGFSFQDAMNNS 119

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARPTASVMI 177
              T   +    +  L+ EI  ++++I G+  A V+IV+PD  +F       + TA+VM+
Sbjct: 120 LATTDQERRQKYLYFLQNEIQNSLKTIDGVQDAIVNIVVPDQNAFVLSNTTNQATAAVML 179

Query: 178 RAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIV 234
                        + I   V+ +V  L   +VTV+D+ GK+LTA   +         ++ 
Sbjct: 180 TLKPGVTLSSSQVKGIIDFVSKSVEGLKPENVTVIDNNGKILTAESDDTAENANSQFALQ 239

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIR 289
           + +Q +++ N+   L    G  N        LN D +    I Y P     +  + RSI+
Sbjct: 240 KKVQEDLQQNLQTLLEQVFGPGNVVVRANVTLNFDKKTEDRIEYLPVEGNDNKGIVRSIQ 299

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
             K+  ++  +Q  +      N P  +        +  + +K E   NYEIN    +   
Sbjct: 300 ELKE--KATGTQGGNPAGTSSNNPPTTQT---TGSNTSDYNKTETTINYEINQIKTSLIE 354

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD---TI 406
              K+E +S+AVVVNK                +S   +I  +V+ A G     GD    +
Sbjct: 355 AQGKIESISVAVVVNKN-------------LNNSMKQQIADLVAKAAG-----GDSRVQV 396

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
           ++  M F ++ L  +   Q +    +  +   ++ ALV   G   +       +RR    
Sbjct: 397 SVQGMQFNQD-LLKTMQQQANVSKGVPMYAWAMLAALVLGGGLFFI------MMRRKKKE 449

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
                 E    +   P                                    I+     +
Sbjct: 450 TSLATAEEEALATAEP---------------------------------IEEIDFTYEDE 476

Query: 527 SDLRLLHMIEINEERFAKILRKWARSE 553
              ++  +I+   E   +I+R W   E
Sbjct: 477 KKKQIEKLIKEKPEIVVQIIRTWLNEE 503


>gi|269792946|ref|YP_003317850.1| flagellar M-ring protein FliF [Thermanaerovibrio acidaminovorans
           DSM 6589]
 gi|269100581|gb|ACZ19568.1| flagellar M-ring protein FliF [Thermanaerovibrio acidaminovorans
           DSM 6589]
          Length = 524

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 128/566 (22%), Positives = 221/566 (39%), Gaps = 66/566 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L++L  FF     L R +   L     + +   +   F      YD L+  L + D   +
Sbjct: 8   LERLKGFF---LGLERWQRYSLVGAGALVLASLVLLAFVAGRTAYDPLFSGLTMEDQGAV 64

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L E  I F++    ++I VP   V +ARI LA  G+P      G+E+FD+    G+ 
Sbjct: 65  VEYLKEQKIPFKVDPGANAILVPRRNVYEARIALAQMGIPKGGV-VGFEIFDQ-PKMGMN 122

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
            F Q +   RALEGE++RTI  I  +  ARV IV+P+   F +     TASV++R     
Sbjct: 123 DFQQRVAYARALEGELSRTISKIDAVEEARVSIVIPEQRLFLEEQRPSTASVLVRLKPGR 182

Query: 184 V--YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----------ANEMERNILGKS 230
               +    I +LVA +V  L   DVTV+D++GK+L+           +    R +    
Sbjct: 183 EIGQEQVRGIVNLVARSVEGLRPEDVTVVDTSGKVLSDLIHDDNLIYMSGSDGRAVSSVQ 242

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY--DPDSK-VERS 287
             + +  + E+E  +   L    G       V  EL+ D +      +   PD K V RS
Sbjct: 243 RELERQQEQELERKVRVMLEKVFGPGKAVVRVRVELDFDKKSTSRREFIPGPDGKGVIRS 302

Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
            +  +++     + P  A     N+P       P        +K +  +NY+I T+   T
Sbjct: 303 QQNVEESYTGPGTPPGGAPGTTTNIPGYVVN--PNQGGNVEYNKTDTVTNYDITTQESQT 360

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
                 ++RLS +V+V+                 ++    + + V+AA GI+  RGD + 
Sbjct: 361 QSTPGAIKRLSASVIVDGQ-------------LDEAASQNLRQTVAAAIGIDEARGDRLV 407

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           I +M F  +       +     +   R     +  L+ L+      FL     +      
Sbjct: 408 IQAMKF--DTTLADQMLAQLEAERRQRLIGAALVGLLVLLAAGGFGFLWYRRRK------ 459

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
                               A    L+P +      S +++  +   + ++    + ++ 
Sbjct: 460 -------------------LAALARLVPQEGEQKAPSLKELLENPELMTAQGELAILEE- 499

Query: 528 DLRLLHMIEINEERFAKILRKWARSE 553
             +L      N E  A +++ W   E
Sbjct: 500 --QLRLYASNNPEEVANLIKNWLAEE 523


>gi|78776673|ref|YP_392988.1| flagellar MS-ring protein [Sulfurimonas denitrificans DSM 1251]
 gi|78497213|gb|ABB43753.1| Flagellar FliF M-ring protein [Sulfurimonas denitrificans DSM 1251]
          Length = 566

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 132/571 (23%), Positives = 246/571 (43%), Gaps = 32/571 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEVS 58
           +  QL   +     L + + LI++  ++  +   +    +         Y+ L+  L   
Sbjct: 6   LFSQLATLY---DKLTKQQKLIISGAVVGIVAFIVFLVVYTEKRDALSKYETLFDSLSSE 62

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
           D  ++   L + NI + I DN + I VP + V K RI +A+ G+P +S   G+ELFDK  
Sbjct: 63  DAAKVIEQLEKDNIPYEILDN-NIIKVPKNAVYKERIAIASLGIPKNSG-VGFELFDKQE 120

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178
            FG TSF Q +  +RA+EGE++RTI S++ I +A V + +P    F +    PTASVMI 
Sbjct: 121 -FGATSFDQNVKYLRAIEGELSRTINSLAPIESASVSLALPKETLFVEKQGEPTASVMIT 179

Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQA 236
            I       K    I++LV+AAVPNL   +V ++D+ G+ L  ++ E   +G+  S+ Q 
Sbjct: 180 LIEGRKLSSKQIRGIKNLVSAAVPNLSASNVMLIDNDGETL-GDDDEMAQMGELSSVQQN 238

Query: 237 I----QHEIEMNINKALAAFLGVD-NFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
                + + +  I + ++ F+G +    + V  E +   Q     VYDP++ V RS +LS
Sbjct: 239 FKTKEEKKKQRKIIEVVSPFVGGEQKVVAQVTIEFDFSIQNSTSEVYDPEN-VVRSEQLS 297

Query: 292 KDAQ-RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
           ++ +  S  ++         N+  V    +   +++E  +K    +NYE+      T  +
Sbjct: 298 EEKRDGSAPAEVGGVPGTVSNIGPV--EGLASNKTIEKYEKNTGTTNYEVGKTVSTTKSE 355

Query: 351 NYKLERLSIAVVVNKG--RLTEVLGRSA----DQGKIDSYLAEINKIVSAATGINSRRGD 404
             +++R++ AVVV+      ++  G+       +   +S L  +  +VS + GI+  RGD
Sbjct: 356 FARIKRVTAAVVVDGKYNYKSDADGKPTSELEYEALSESDLEALRALVSRSIGISEDRGD 415

Query: 405 TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
            I++ ++ F       S       +     + A       ++   LL+  L    +    
Sbjct: 416 QISVQNLQFKRADSDPSKERVNQVVSFSQTYLAPFSELFKYIFVLLLLLILYKKVISPFA 475

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
                   E     I  P           +     ++    ++      +     +    
Sbjct: 476 QRMLEISKE--EDDIGKPILDIEDDEDEDLVEKVQSMRKKVEEQLGVGNHFNE--DELKY 531

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIE 555
                ++  M + + E  A +L+     E +
Sbjct: 532 DVLLEKIKSMTDESPEAVAHVLQALLTEESD 562


>gi|300854208|ref|YP_003779192.1| flagellar M-ring protein FliF [Clostridium ljungdahlii DSM 13528]
 gi|300434323|gb|ADK14090.1| flagellar M-ring protein FliF [Clostridium ljungdahlii DSM 13528]
          Length = 532

 Score =  326 bits (837), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 120/567 (21%), Positives = 222/567 (39%), Gaps = 52/567 (9%)

Query: 4   LDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           + ++ Q FK+       L R + +  + + +  +   +     +    Y  L+  L+ +D
Sbjct: 1   MGKISQIFKNLIGKWKDLSRNKKIAFSVIAVGIVAALIFGGLTLGKTKYAVLFSNLDATD 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I   L    +D ++   GSSI VP   V K R+   ++ +  ++ + G+EL DK N 
Sbjct: 61  SATIYKQLQSDKVDAKVQ--GSSILVPKDQVDKIRMQTLSE-VQLTNGSQGFELLDKSN- 116

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           FG T     I   RAL+GEI RTI+S+  I  ARVH+V+PD   F K     +ASV I+ 
Sbjct: 117 FGQTDQQMNINYQRALQGEIERTIKSLPQIENARVHLVLPDNTEFVKDTQPGSASVTIKL 176

Query: 180 INPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-------ANEMERNI--LG 228
                    +  A+  LV+ +V N+   +V V+D    LL+       + +   +     
Sbjct: 177 KPGQTLSQDQTKALVALVSGSVKNIPKENVEVIDDKLNLLSRDLYQNKSGDSSSSTIPAD 236

Query: 229 KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288
           K   + Q  + ++E  +   L    G +  +  + A+L+ D  Q     YDP + V    
Sbjct: 237 KQQELQQKYEDDMEKRLLAMLEPIYGKNKVKVQINADLDFDAVQQDSTTYDPKNVVVSEH 296

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
            ++     +  +   S   V+ NM + S        S +N    E   NY+++     T 
Sbjct: 297 TVNNTNTGATNNASTSP--VDNNMSNTSVNNANGGNSTQN----EVTRNYDVSKVEQKTI 350

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
                ++RL+ +V ++                 D+    I  +  +A G N  RGDTI +
Sbjct: 351 KAPGSVKRLTASVALDGTV-------------DDATKTSIRNLAVSAIGYNQTRGDTINV 397

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV-TFLGLHALRRLHNID 467
            ++ F      ++     +     ++     I     + G LL+   +G    RR H  D
Sbjct: 398 EAIPFDTTAQDSAKKDLDAMQKAEAQANRNKIIIGASIAGALLIAAIVGFILWRRKHAED 457

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
                    +  L    + +      +  D+      N+  F          +++V  + 
Sbjct: 458 ---------EEELFDEELGNTQGIDAVIGDDDLTKEQNKLKFKPVEFEHETEDTHVENE- 507

Query: 528 DLRLLHMIEINEERFAKILRKWARSEI 554
              +    +   ++ A I++ W   + 
Sbjct: 508 ---IKKYAKDKPDQVADIIKAWIAEDE 531


>gi|283834471|ref|ZP_06354212.1| flagellar M-ring protein FliF [Citrobacter youngae ATCC 29220]
 gi|291070018|gb|EFE08127.1| flagellar M-ring protein FliF [Citrobacter youngae ATCC 29220]
          Length = 560

 Score =  326 bits (837), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 132/573 (23%), Positives = 247/573 (43%), Gaps = 42/573 (7%)

Query: 3   ILDQLLQFFKSGT-SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           ++ ++ QF  S +  L   + L L +   V     + +  +  +  Y +LY   E   V+
Sbjct: 4   LIKKVTQFLPSFSFRLDGNKRLALLAAAAVAATAIIVSVLWNGNHGYVSLYGSQENLPVS 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           +I   L    +++RI      I VP   + K R+ LAA+G+  +   SGYEL DK    G
Sbjct: 64  QIVTVLDGEKLEYRIDPQSGQILVPEEALSKTRMTLAAKGV-QAMLPSGYELMDKDEVLG 122

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAI 180
            + F+Q I   R+LEGE+A++I ++  + +ARVH+ + +  SF      + +ASV++R  
Sbjct: 123 ASQFVQNIRYKRSLEGELAQSIMTLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLH 182

Query: 181 NPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIV 234
             S        AI HLV+ +VP+L    V+V+D  G LL+    A E       K   I+
Sbjct: 183 YGSKLDLDQVNAIVHLVSGSVPDLKASLVSVVDQAGNLLSDGIGAGEAVSAATRKRDQIL 242

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
           + IQ +   ++   L + +G  N+R +V+ +L++      +  Y    KV R     +  
Sbjct: 243 KDIQDKTRASLANVLDSLVGTGNYRVSVMPDLDLSNIDETQEHYGDTPKVNR----EETV 298

Query: 295 QRSETSQPE-SAVTVEQNMPHVSDRKVPLPRSLEN-----------TDKKEEQSNYEINT 342
             S+T+Q          N P ++  +V    +              +   E + +Y  + 
Sbjct: 299 LDSDTNQIAMGIPGSLSNRPPLAANQVANGTAAGTAPEESRQPAALSKHSENKRDYSWDR 358

Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402
                 H  + ++RL++AVV+N+          A +        ++  +++ A GI+++R
Sbjct: 359 SVEHIQHPGFDIKRLNVAVVLNQSA-------PALKNWKPEQTTQLTALLNNAAGIDAKR 411

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           GD ++++ ++F+   +     V +   D       +++  +  +   LL   L L  +R 
Sbjct: 412 GDNLSLSLLNFVPQSVPVEPVVPLWKDD-------SILAWVRLIGCGLLALLLLLFVVRP 464

Query: 463 LHNIDDAKKGEVGGKSI-LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521
           L     A++       + L   PI+                +     F    +L S+ + 
Sbjct: 465 LMKRLTAERRRTPTPELALDAAPIAIPADKTHFAAAEDERKNIELPSFPGDDSLPSQSSG 524

Query: 522 YVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
              K   L+ L M + +  R A++LR+W  S  
Sbjct: 525 LEVKLEFLQKLAMSDTD--RVAEVLRQWITSNE 555


>gi|54308116|ref|YP_129136.1| flagellar MS-ring protein [Photobacterium profundum SS9]
 gi|46912542|emb|CAG19334.1| Putative polar flagellar M-ring protein FliF [Photobacterium
           profundum SS9]
          Length = 580

 Score =  326 bits (837), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 104/555 (18%), Positives = 221/555 (39%), Gaps = 34/555 (6%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
               L R  IL+L+  I V +++ M    ++  P    L    + +++  I     +  +
Sbjct: 45  GNLDLLRQVILVLSVSICVALIVMM--VMWIKEPEMRPLGT-YDTAELISILDHFDQTKV 101

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
            + +  +G++I VP+      ++ L   GL ++S   G ++  +   FG++  ++     
Sbjct: 102 QYEL--DGNTIRVPADDFSSIQLGLTRAGL-NNSVAEGDDILLQDMGFGVSQRLEGERLK 158

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEA 190
            + E ++AR I+ I  +  A+V + +P    F +     +A+V +        K    ++
Sbjct: 159 LSRERQLARAIEQIRQVRKAQVLLALPKQSVFVRHNQEASATVFLTLGTNGSLKQQEVDS 218

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKA 248
           I  +VA+AVP+L    VTV D  G+LL++   + +     K   + +  +  +   I+  
Sbjct: 219 IVDMVASAVPSLKPNRVTVTDQHGRLLSSGTEDPSATAQRKEYELERKQEQGMREKIDSI 278

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------T 299
           L   LG  N+ S V   ++   Q+     +DP +   RS    ++              +
Sbjct: 279 LIPILGFGNYTSQVDVTMDFSAQEETRKRFDPSTPSTRSEYTVENYNNGNIVAGIPGALS 338

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           +QP +  ++ Q++  +   +     S      +E   N+E++T           + R ++
Sbjct: 339 NQPPADASIPQDIADMQSGR----GSSNGASHREATRNFELDTVISHRRAQTGTVSRQTV 394

Query: 360 AVVVNKGRLTEV-LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           +V V+   LT    G        ++ L +I +++    G +  RGD + + +M F     
Sbjct: 395 SVAVDYKSLTNPETGEVTRVPVSEAELLKIRRLLMGGVGFSEARGDMLEVIAMPFALPTQ 454

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
                + +      +     +  ALV +V  +++    +  L   H   D    +  G  
Sbjct: 455 ELIAELPIWENPNFNTWIRWLAAALVIIVIVVVLIRPAMKKLLYPHQAADGTPLDKNGLP 514

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
           ILS       + + L   D   L SSN D+           N +  +     +  ++   
Sbjct: 515 ILSSGDDIDLIGSELDSVDGFELSSSNLDLP----------NLHKDEDLLKAVRALVANE 564

Query: 539 EERFAKILRKWARSE 553
            +  A++++ W   +
Sbjct: 565 PDLAAQVVKNWVNED 579


>gi|330889061|gb|EGH21722.1| flagellar MS-ring protein [Pseudomonas syringae pv. mori str.
           301020]
          Length = 428

 Score =  326 bits (836), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 102/403 (25%), Positives = 171/403 (42%), Gaps = 38/403 (9%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L
Sbjct: 24  LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + ANI++ +  N  ++ V S  V +ARI LA  G+  + +N G+E+ DK    G + FM+
Sbjct: 84  TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
                R LEGE+ARTI +++ +  ARVH+ +P    F +   +P+ASV++        + 
Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP L    +TV+D  G LL+  A   E  + GK     + ++  +  
Sbjct: 204 SQVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE----- 298
            +   L   LG D +++ V A ++    +     ++PD    RS +   + + S      
Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNEQRSSSSSTGG 323

Query: 299 -----TSQPESAVTVEQNM----------------------PHVSDRKVPLPRSLENTDK 331
                ++QP    T  QN                         + D     P        
Sbjct: 324 VPGALSNQPPGPATAPQNATAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPAD 383

Query: 332 K--EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372
           K  +   N+E++     T     +L RLS+AVVV+    T   
Sbjct: 384 KRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAA 426


>gi|297544710|ref|YP_003677012.1| flagellar M-ring protein FliF [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842485|gb|ADH61001.1| flagellar M-ring protein FliF [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 503

 Score =  326 bits (835), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 118/567 (20%), Positives = 220/567 (38%), Gaps = 85/567 (14%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
              +QL  F+       + ++ ++A ++ + + L +   + VN P+Y  LY  L + D  
Sbjct: 7   NFREQLTNFWNKFDKKQKMQLGVIAILLFIGVSLLV---YIVNRPNYVVLYSDLSIKDAG 63

Query: 62  RISVALSEA-NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK-VNS 119
            +   L     + ++IS++G +I VP+    + R+ LA +G+P      G+   D   NS
Sbjct: 64  VVVEKLKTEFKVPYKISNDGKTILVPAQYKDEVRMKLATEGIP----EGGFSFQDAMNNS 119

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARPTASVMI 177
              T   +    +  L+ EI  ++++I G+  A V+IV+PD  +F       + TA+VM+
Sbjct: 120 LATTDQERRQKYLYFLQNEIQNSLKTIDGVQDAIVNIVVPDQNAFVLSNTTNQATAAVML 179

Query: 178 RAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIV 234
                        + I   V+ +V  L   +VTV+D+ GK+LTA   +         ++ 
Sbjct: 180 TLKPGVTLSSSQVKGIIDFVSKSVEGLKPENVTVIDNNGKILTAESDDTAENANSQFALQ 239

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIR 289
           + +Q +++ N+   L    G  N        LN D +    I Y P     +  + RSI+
Sbjct: 240 KKVQEDLQQNLQTLLEQVFGPGNVVVRANVTLNFDKKTEDRIEYLPVEGNDNKGIVRSIQ 299

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
             K+  ++  +Q  +      N P  +        +  + +K E   NYEIN    +   
Sbjct: 300 ELKE--KATGTQGGNPAGTSSNNPPTTQT---TGSNTSDYNKTETTINYEINQIKTSLIE 354

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD---TI 406
              K+E +S+AVVVNK                +S   +I  +V+ A G     GD    +
Sbjct: 355 AQGKIESISVAVVVNKN-------------LNNSMKQQIADLVAKAAG-----GDSRVQV 396

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
           ++  M F ++ L  +   Q +    +  +   ++ ALV   G   +       +RR    
Sbjct: 397 SVQGMQFNQD-LLKTMQQQANVSKGVPMYAWAMLAALVLGGGLFFI------MMRRKKKE 449

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
                 E    +   P                                    I+     +
Sbjct: 450 TSLATAEEEALATAEP---------------------------------IEEIDFTYEDE 476

Query: 527 SDLRLLHMIEINEERFAKILRKWARSE 553
              ++  +I+   +   +I+R W   E
Sbjct: 477 KKKQIEKLIKEKPDIVVQIIRTWLNEE 503


>gi|91792682|ref|YP_562333.1| flagellar MS-ring protein [Shewanella denitrificans OS217]
 gi|91714684|gb|ABE54610.1| flagellar M-ring protein FliF [Shewanella denitrificans OS217]
          Length = 566

 Score =  326 bits (835), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 104/530 (19%), Positives = 210/530 (39%), Gaps = 29/530 (5%)

Query: 38  AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97
               +   P Y  L  K++ +++ ++   L +  I + I  +   I VP       ++ L
Sbjct: 53  FVMMWAQEPEYRPL-GKMDTAEMIQVLDVLDKNQIKYEIQLD--VIKVPEDQYQDIKLIL 109

Query: 98  AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
           +  G+ S+   + Y    K + FG++  M++     + E  +AR I+ +  +  A+V + 
Sbjct: 110 SRAGIESNVDTNDY--LSKDSGFGVSQRMEQARLKHSQELNLARVIEELKSVSRAKVILA 167

Query: 158 MPDMGSFRKIGARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           +P    F +  ++P+A+V++     S+  +  +AI  +VA+AV  L+   VTV DS G+L
Sbjct: 168 LPKENVFARNQSQPSATVVVNVRRGSLGQEEIDAIVDIVASAVQGLEPERVTVTDSNGRL 227

Query: 217 LTAN--EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           L +   +       + L +VQ  + E    I   L   LG +NF S V   ++    +  
Sbjct: 228 LNSGSQDGASARARRELELVQNQEAEYRKKIESILMPILGPENFTSEVDVTMDFTAIEQT 287

Query: 275 EIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV------SDRKVPLPRSLEN 328
              + PD    RS    +     E  +         N P +      +  +     +   
Sbjct: 288 AKRFAPDLPALRSEMTIETNTNGE--RVGGIPGALSNQPPMESDIPENAGEATESVASNG 345

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN-KGRLTEVLGRSADQGKIDSYLAE 387
              +E   N+E++T    T      + R+S++V ++ K       G+     + +  LA 
Sbjct: 346 NVHREATRNFELDTTISHTRQQIGVVRRVSVSVAIDFKAGAAGEDGQVTRVARTEQELAN 405

Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447
           I +++  A G +++RGD + + ++ F++  L       +       R     I A+V LV
Sbjct: 406 IRRLLEGAVGFSAQRGDMLEVVTVPFMDQLLEELPAPDLWEQPWFWRAIKLGIGAIVILV 465

Query: 448 GTLLVTFLGLHALRRLHNIDDAKKGEVG--GKSILSPPPISSAVTTGLMPNDNIALDSSN 505
             L V       LRRL + +     +    G  +       +A T G+       L++  
Sbjct: 466 LILAV---VRPMLRRLIDPEGVNMPDDTRLGHELAEIEDQYAADTLGM-------LNTKE 515

Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
            +            N +        +  ++    E   ++++ W   + +
Sbjct: 516 AEYSYADDGSIHIPNLHKDDDMIKAIRALVANEPELSTQVVKNWLLEDAQ 565


>gi|283784015|ref|YP_003363880.1| lateral flagellar M-ring protein [Citrobacter rodentium ICC168]
 gi|282947469|emb|CBG87016.1| lateral flagellar M-ring protein [Citrobacter rodentium ICC168]
          Length = 554

 Score =  326 bits (835), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 121/534 (22%), Positives = 238/534 (44%), Gaps = 43/534 (8%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
           +  + ++  Y +LY + E   V++I   L    +++RI      I VP   + K R+ LA
Sbjct: 41  SLLWNSNHGYVSLYGRQENLPVSQIVTVLDGEKLEYRIDPQSGQILVPEEALSKTRMALA 100

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
           A+G+  +   +GYEL DK    G + F+Q I   R+LEGE+A++I ++  + +ARVH+ +
Sbjct: 101 AKGV-QALLPNGYELMDKDEVLGSSQFVQNIRYKRSLEGELAQSIMTLDAVESARVHLAL 159

Query: 159 PDMGSF-RKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
            +  SF      + +ASV++R    +        AI HLV+ ++P L    V+V+D  G 
Sbjct: 160 NEESSFVVSDRPQNSASVVVRLHYGAKLDMDQVNAIVHLVSGSIPGLKATQVSVVDQAGN 219

Query: 216 LLTANEMERNILGKSL----SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ 271
           LLT        +  +      I+Q IQ +   ++   L + +G  N+R +V+ +L++   
Sbjct: 220 LLTDGTGAGEAVAATTRKHDQILQDIQDKTRASVANVLDSLVGPGNYRISVMPDLDLSDI 279

Query: 272 QIREIVYDPDSKVERSIRLSKDAQRSETSQPE-SAVTVEQNMPHVSDRKVPLPRSLENTD 330
                 Y  + KV R     ++ Q S+T+Q          N P V+  +V    S    +
Sbjct: 280 DETREHYGNEPKVNR----EENVQDSDTNQIAMGIPGSLSNRPPVAPNQVTNNASATTAE 335

Query: 331 K---------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI 381
                      E + +Y  +       +  + ++RL +AVV+N+          A +   
Sbjct: 336 SNPPQALSKHSESKRDYSYDRSVQHIQYPGFTVKRLKVAVVLNQEA-------PALKNWT 388

Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441
                ++  +++ A GI+++RGD ++++ + F+  +      + +   + +      +  
Sbjct: 389 PEQTRQLTDLLNNAAGIDTQRGDNLSLSLLRFVPPKTPVEPVIPLWKDESVLAWARMI-- 446

Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKG-EVGGKSILSPPPISSAVTTGLMPNDNIA 500
               L+  LL+ F+    ++RL  +  +    E    S+ +  P  +A       +D  +
Sbjct: 447 -GCGLLALLLLLFVVRPMMKRLTAVRQSLPALEKVAASVPAIEPQFAAA-----EDDRKS 500

Query: 501 LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
           ++  +   F    +L  + +    K   L+ L M + +  R A++LR+W  S  
Sbjct: 501 IELPS---FPGDDSLPPQSSGLEVKLEFLQKLAMSDTD--RVAEVLRQWITSNE 549


>gi|94495429|ref|ZP_01302009.1| flagellar M-Ring protein [Sphingomonas sp. SKA58]
 gi|94424817|gb|EAT09838.1| flagellar M-Ring protein [Sphingomonas sp. SKA58]
          Length = 586

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 119/579 (20%), Positives = 242/579 (41%), Gaps = 51/579 (8%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +D +                +    ++  + +  AA   +  P   +L+  L  SD + +
Sbjct: 33  MDAIKARVTGFMKQPAVAKSLPLLGLIGTVAVAGAAWLALREPPQRDLFRGLPDSDKSAV 92

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  L +  + +   ++G +++V      KA++ LAAQGLP S+ + G  + D +   G +
Sbjct: 93  AQVLDQNGVRYDFDNSG-AMTVAEDDYFKAKMMLAAQGLPKSAPD-GNSMIDSL-PMGAS 149

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
             ++      A E ++ARTI++I  +  A+VH+ +     F +   +P+ASVM+R     
Sbjct: 150 RAVEGEKLRSAREMDLARTIEAIDSVETAKVHLAVEPPSVFLRERTKPSASVMLRLAQGR 209

Query: 184 --VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEI 241
               +   AI HLVA+++P L   D++++D  G+LLT N+       + L++   I+   
Sbjct: 210 QLTQQQVSAIVHLVASSIPELSPDDISLVDQNGRLLTDNDGNAG-DDRQLAMQGKIEDRY 268

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS---------- 291
             ++   L   LG  NF + V AELN   +Q     Y  D    RS   S          
Sbjct: 269 RQSVIALLTPILGDGNFSTEVHAELNFAERQATRETYPQDEARLRSEAGSWASDPRGQGK 328

Query: 292 ---KDAQRSETSQPESAVTVEQNMPH------VSDRKVPLPRSLENTDKKEEQS---NYE 339
                   + ++Q     TV Q  P+          +   P +  +   K E++   N+E
Sbjct: 329 GEASGIPGALSNQAPVDPTVTQTNPNGQAVTQGQTAQAQGPGTPADPLMKTEETFNRNFE 388

Query: 340 INTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN 399
           +  +          ++RLS+AV ++ G           + +    +A +  +V  A G +
Sbjct: 389 LGREVSVVRDATGTVKRLSVAVALDNG--------PDGKPRSPQEIAALEALVKGAVGFD 440

Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA 459
             RGD + ++S  F++     +   +  ++  L+R+ + ++ AL+ + G      +G   
Sbjct: 441 QTRGDVVALSSRSFVKEATAETPWYEADWIAPLARNVSALLVALLVIFG------IGRPL 494

Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519
           L+R     +A   E   +  +    IS+ +T   + N          D+ S + +   R 
Sbjct: 495 LKRRAAAQEAAAAERAEQKQVIGQAISTELTKQAVANPADPSAPVTLDMISSTYDYAQRA 554

Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIEDRY 558
           +          + + ++ + +R A ++R   +   +++ 
Sbjct: 555 DL---------IRNFVKQDPDRAALVVRDLLKDAKKEKE 584


>gi|186896782|ref|YP_001873894.1| flagellar MS-ring protein [Yersinia pseudotuberculosis PB1/+]
 gi|186699808|gb|ACC90437.1| flagellar M-ring protein FliF [Yersinia pseudotuberculosis PB1/+]
          Length = 546

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 126/560 (22%), Positives = 246/560 (43%), Gaps = 29/560 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +LD++ Q    G  LG     IL S + + +   +    + +S  Y  L+   E   + +
Sbjct: 1   MLDKIKQKLSPG-QLGENTKTILMSAVALLVTAAIIFSLWRSSQGYTALFGSQENIPITQ 59

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +   L    I +RI+ +   + V  + +GKARI LAA+G+ +++   GYEL DK +  G 
Sbjct: 60  VVEVLEGEAIAYRINPDNGQVLVAENQLGKARILLAAKGI-TATLPIGYELMDKESMLGS 118

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRAIN 181
           + F+Q +   R+LEGE+A+++ ++S +  ARVH+ M +  SF     A  +ASV++R   
Sbjct: 119 SQFIQNVRYKRSLEGELAQSMMALSAVEYARVHLGMSEASSFAISNHADNSASVVLRLRY 178

Query: 182 PSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQ 235
                 +   AI  LVA ++P +   +V V+D  G+LL+    AN      +     +  
Sbjct: 179 GQTLSTEQVGAIVQLVAGSIPGMKPANVRVVDQHGELLSQAYQANSEGVPSVKSGTELAH 238

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            +Q   E NI   L + +G +N+R +V  +L+M   +     Y PD       R++ +  
Sbjct: 239 YLQSTTEKNIANLLNSVIGANNYRISVSTQLDMSRIEETAEHYGPDP------RINDENI 292

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
           + E S  + A+ +  ++ +    +    ++     + + Q  Y  +       +  YKLE
Sbjct: 293 QQENSNDDMAMGIPGSLSNQPIPQSQAGQTPAAVSRSQAQRKYIYDRNIRHVRYPGYKLE 352

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           ++++AVV+NK            +        E+ +++  A GI+ +RGD++TI  M F  
Sbjct: 353 KMTVAVVLNKS-------LPVLEQWTPEQQEELKRLIEDAAGIDVKRGDSLTINMMAFAV 405

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
             L +   +         R    +   L+ L+  L         L + ++   ++   + 
Sbjct: 406 PTLIDEPVMPWWQEPSTFRWAELLGIGLLSLLVLLFGV----RPLMKRYSRKGSENLPLA 461

Query: 476 GKSILSPPPISSAVTTGLMPNDNI-ALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
             S  +   +    T       +    ++ +      S +L  + +   +K +   L  +
Sbjct: 462 ISSASADEALDHVDTGVDGAESSPRTENAFSASSLWKSDDLPEQGSGLETKIAH--LQQL 519

Query: 535 IEINEERFAKILRKWARSEI 554
            +   ER A+++++W  S  
Sbjct: 520 AQSETERTAEVIKQWINSNE 539


>gi|254445735|ref|ZP_05059211.1| flagellar M-ring protein FliF [Verrucomicrobiae bacterium DG1235]
 gi|198260043|gb|EDY84351.1| flagellar M-ring protein FliF [Verrucomicrobiae bacterium DG1235]
          Length = 525

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 128/517 (24%), Positives = 243/517 (47%), Gaps = 22/517 (4%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           + +Q  + ++S  +  R  +++ + ++++ +   +    +   P    LY KL   +  +
Sbjct: 1   MGNQFKEIWQSLGANQRISLILASGLVVLAM---IGMMIWAAQPDMQLLYGKLSAEEAGK 57

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L +  + F     G+SI V +S V + R+ LA +G+P+  S  G+ELFD+  SFG+
Sbjct: 58  IVAKLEQKGVAFETGSGGNSIYVEASQVHRIRMELATEGIPAGGSGPGFELFDE-GSFGI 116

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMIRAI 180
           + F+Q    +RA++GE+ARTI    G+ +ARV +VMP+      R+   RPTASV +   
Sbjct: 117 SDFVQRTNFLRAVQGELARTISQFDGVESARVMVVMPENRLLASREGQDRPTASVFVDG- 175

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQA 236
                 +  +IRHLVA A+  L + DV V+DS G +L+    ++ +   I    +   ++
Sbjct: 176 GGLSTGTVNSIRHLVANAIQRLSINDVVVVDSMGTVLSEELRSDGIGSGISNDVIKYRKS 235

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ- 295
           +++     +   L   LG +     V  ++   + Q  E  +DP+S+V RS    +D+Q 
Sbjct: 236 LENYFTGKVQSMLDRVLGPNQSEVRVAVDIETASVQTTEKTFDPESQVARSTVSDEDSQV 295

Query: 296 -RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQS--NYEINTKSIATTHDNY 352
            R  + +   A  V  N P           +L+  + K +    N+EIN + +++  +  
Sbjct: 296 ERETSGEGAGATGVSSNTPAAGGAGQTAFSTLKEREDKNKTRTENFEINERIVSSVQNPG 355

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG----DTITI 408
            ++RL+ +++V   R+ +V G+     +    L E++ IV  A GI    G    D +T+
Sbjct: 356 SIKRLTASLLV-AKRMEDVRGQMNFVDRTPEQLEELSDIVVTALGIQLAPGQTAADFVTV 414

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
             M F  +   N G + +     + R+     N +  ++G  ++ F     L+R      
Sbjct: 415 KEMAFAVDPFENHGEL-LKEDATIQRYIELGKNGIGAVLGIGVIIFFM-QMLKRYKPEKM 472

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505
           + +     + + +     ++V T  M N+ I    +N
Sbjct: 473 SIEVLQPDQMLQTRKMEDTSVVTPEMLNELIRQKPAN 509


>gi|170755222|ref|YP_001782279.1| flagellar MS-ring protein [Clostridium botulinum B1 str. Okra]
 gi|169120434|gb|ACA44270.1| flagellar M-ring protein FliF [Clostridium botulinum B1 str. Okra]
          Length = 526

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 106/565 (18%), Positives = 226/565 (40%), Gaps = 54/565 (9%)

Query: 4   LDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           +++L +FFK      T   + + +  + + L  I   +A   +     Y  L+  ++ +D
Sbjct: 1   MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              +   L +  ++ ++   G++I VP   V + R+ + ++ +P ++ + G+E+ DK   
Sbjct: 61  SGTVLQKLKDKKVEAKVE--GNNILVPKDKVDELRMQMLSE-VPLTNGSQGFEILDKSQ- 116

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           FG T    +I   RAL+GE+ RTI+    +   RVH+V+P+  +F K      ASV +  
Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNTRVHLVLPEETAFVKETQPGRASVTLNL 176

Query: 180 INPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--------EMERNILGK 229
                   +  ++I  LV+ +V N+   +V V+D+   LLT N        E       K
Sbjct: 177 KQGQTLSKEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLTKNLFDASGSLEEATTSAEK 236

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
              + +  + +++  +   L A  G D  +  +  +L+ D  +   + YDP + V  S  
Sbjct: 237 QQQLQKNYEKDLQNRLVSMLEAVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNVVV-SEH 295

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
             K+  ++      +  +V  N  ++ +R        E + + E   NYEI+     +  
Sbjct: 296 SIKEKNQNNAGGNNTNGSVVDN--NMVNRTTQNNNGSETSSRDENTKNYEISKTQQDSIK 353

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
               ++RL+ ++V++                 +   + +  +  +A G + +RGDTI + 
Sbjct: 354 APGSVKRLTASIVLDGN-------------IDEETRSAVRNLAVSAIGYDEKRGDTINVE 400

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
            + F                          +   + L   LL+  +    +++ +N ++ 
Sbjct: 401 GLPFDTAAKDKVKKDLEDMQKTEKTKERIKLFTAIGLGVLLLLGAIIFFIIKKRNNDEEY 460

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
           ++ E G   ++      +       P     +D   QD  +H  N               
Sbjct: 461 EEDEEGLDILIDDNDSETKQVPKFKP-----IDLETQDEKTHVENE-------------- 501

Query: 530 RLLHMIEINEERFAKILRKWARSEI 554
            +    +   ++ A+I++ W   + 
Sbjct: 502 -IRKYAKDKPDQVAEIIKSWLAEDE 525


>gi|90411023|ref|ZP_01219037.1| flagellar M-ring protein [Photobacterium profundum 3TCK]
 gi|90328236|gb|EAS44547.1| flagellar M-ring protein [Photobacterium profundum 3TCK]
          Length = 580

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 105/555 (18%), Positives = 222/555 (40%), Gaps = 34/555 (6%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
               L R  IL+L+  I V +++ M    ++  P    L    + +++  I     +  +
Sbjct: 45  GNLDLLRQVILVLSVSICVALIVMM--VMWIKEPEMRPLGT-YDTAELITILDHFDQTKV 101

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
            + +  +G++I VP+      ++ L   GL +++   G E+  +   FG++  ++     
Sbjct: 102 KYEL--DGNTIRVPADNFSSIQLGLTRAGL-NNAVAEGDEILLQDMGFGVSQRLEGERLK 158

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEA 190
            + E ++AR I+ I  +  A+V + MP    F +     +A+V +        K    ++
Sbjct: 159 LSRERQLARAIEQIRQVRKAQVLLAMPKQSVFVRHNQEASATVFLTLGTNGSLKQPEVDS 218

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKA 248
           I  +VA+AVP+L    VTV D  G+LL++   + +     K   + +  +  +   I+  
Sbjct: 219 IVDMVASAVPSLKPNRVTVTDQHGRLLSSGTEDASATAQRKEYELERKQEQAMREKIDSI 278

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---------T 299
           L   LG  N+ S V   ++   Q+     +DP +   RS    ++              +
Sbjct: 279 LIPILGFGNYTSQVDVAMDFSAQEETRKRFDPSTPSTRSEYTVENYNNGNIVAGIPGALS 338

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           +QP +  ++ Q++  +   +     S +    +E   N+E++T           + R ++
Sbjct: 339 NQPPADASIPQDIADMQSGR----GSSDGASHREATRNFELDTVISHLRAQTGTVSRQTV 394

Query: 360 AVVVNKGRLTEV-LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           +V V+   LT    G        ++ L +I +++    G +  RGD + + +M F     
Sbjct: 395 SVAVDYKSLTNPETGEVTRVPVSEAELLKIRRLLMGGVGFSEARGDMLEVIAMPFALPTQ 454

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
                + +      +     +  ALV +V  +++    +  L   H   D    +  G  
Sbjct: 455 ELIAELPIWENPNFNTWVRWLAAALVIIVIVIVLIRPAMKKLLYPHQAADGTPLDKNGLP 514

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
           ILS       + + L   D   L SSN D+           N +  +     +  ++   
Sbjct: 515 ILSSGDDIDLIGSELDSVDGFELSSSNLDLP----------NLHKDEDLLKAVRALVANE 564

Query: 539 EERFAKILRKWARSE 553
            +  A++++ W   +
Sbjct: 565 PDLAAQVVKNWVNED 579


>gi|325526932|gb|EGD04395.1| flagellar MS-ring protein [Burkholderia sp. TJI49]
          Length = 367

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 94/321 (29%), Positives = 152/321 (47%), Gaps = 14/321 (4%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VPS+ V + R+ LAA G
Sbjct: 49  WSRAPDYRVLYSNLSDRDGGAIITALQQANVPYKFADAGGAILVPSNQVHETRLKLAAMG 108

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RTI+SI+ +  ARVH+ +P  
Sbjct: 109 LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLAIPKP 166

Query: 162 GSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV +      V      +AI  +V++ VP++   +VT++D  G LLT 
Sbjct: 167 SVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMSAKNVTIVDQDGNLLTQ 226

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ ++   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 227 PASASGLDASQLKYVQQVEQNTQKRIDAILAPIFGAGNARSQVSADIDFSRLEQTSENYG 286

Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPH-------VSDRKVPLPRSLENT 329
           P+   ++S   S+    S     S          N P        V+      P++   +
Sbjct: 287 PNGSPQQSAIRSQQTSTSTELAQSGASGVPGALSNTPPQPASAPIVAGNGANAPQTTPVS 346

Query: 330 DKKEEQSNYEINTKSIATTHD 350
           D+K++ +NYE++         
Sbjct: 347 DRKDQTTNYELDKTIRHLEQP 367


>gi|226950075|ref|YP_002805166.1| flagellar M-ring protein fliF [Clostridium botulinum A2 str. Kyoto]
 gi|226842546|gb|ACO85212.1| flagellar M-ring protein fliF [Clostridium botulinum A2 str. Kyoto]
          Length = 526

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 106/565 (18%), Positives = 226/565 (40%), Gaps = 54/565 (9%)

Query: 4   LDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           +++L +FFK      T   + + +  + + L  I   +A   +     Y  L+  ++ +D
Sbjct: 1   MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              +   L +  ++ ++   G++I VP   V + R+ + ++ +P ++ + G+E+ DK   
Sbjct: 61  SGTVLQKLKDKKVEAKVE--GNNILVPKDKVDELRMQMLSE-VPLTNGSQGFEILDKSQ- 116

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           FG T    +I   RAL+GE+ RTI+    +   RVH+V+P+  +F K      ASV +  
Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNTRVHLVLPEETAFVKETQPGRASVTLNL 176

Query: 180 INPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--------EMERNILGK 229
                   +  ++I  LV+ +V N+   +V V+D+   LLT N        E       K
Sbjct: 177 KQGQNLSKEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLTKNLFDASGSLEEATTSAEK 236

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
              + +  + +++  +   L A  G D  +  +  +L+ D  +   + YDP + V  S  
Sbjct: 237 QQQLQKNYEKDLQNRLVSMLEAVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNVVV-SEH 295

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
             K+  ++      +  +V  N  ++ +R        E + + E   NYEI+     +  
Sbjct: 296 SIKEKNQNNAGGNNTNGSVVDN--NMVNRTTQNNNGSETSSRDENTKNYEISKTQQDSIK 353

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
               ++RL+ ++V++                 +   + +  +  +A G + +RGDTI + 
Sbjct: 354 APGSVKRLTASIVLDGN-------------IDEETRSAVRNLAVSAIGYDEKRGDTINVE 400

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
            + F                          +   + L   LL+  +    +++ +N ++ 
Sbjct: 401 GLPFDTAAKDKVKKDLEDMQKTEKTKERIKLFTAIGLGVLLLLGAIIFFIIKKRNNDEEY 460

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
           ++ E G   ++      +       P     +D   QD  +H  N               
Sbjct: 461 EEDEEGLDILIDDNDSETKQVPKFKP-----IDLETQDEKTHVENE-------------- 501

Query: 530 RLLHMIEINEERFAKILRKWARSEI 554
            +    +   ++ A+I++ W   + 
Sbjct: 502 -IRKYAKDKPDQVAEIIKSWLAEDE 525


>gi|323705446|ref|ZP_08117021.1| flagellar M-ring protein FliF [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535348|gb|EGB25124.1| flagellar M-ring protein FliF [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 502

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 120/565 (21%), Positives = 224/565 (39%), Gaps = 82/565 (14%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            I +Q+  F+       + +I I+A +++  I L +   + +N P+Y+ LY  L   D  
Sbjct: 7   NIREQIDNFWNKFDKKQKIQIGIIALLLIGSIALLL---YILNRPNYEVLYSGLSTKDAG 63

Query: 62  RISVALS-EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK-VNS 119
            +   L  E  I ++I  +GS+I VP+    +AR+ LA +G+P      G+   D   NS
Sbjct: 64  TVVDKLKNELKIPYKIEGDGSTILVPAQYKDEARMQLATEGIPQ----DGFSFSDAMNNS 119

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARPTASVMI 177
              T   +    +  ++ EI  T+++I G+  A+V+IV+PD  +F         TA+VM+
Sbjct: 120 LATTDQERREKYIYFVQNEIQNTLKTIDGVQDAKVNIVVPDQSNFVLSNSDNSSTAAVML 179

Query: 178 RAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIV 234
           +         +    I + V+ +V  L    VT++D  GK+L   N+   +      ++ 
Sbjct: 180 QLKPGVTLTNQQINGITNFVSKSVQGLSPDKVTIIDGNGKVLVAQNDSSLDGASSQYALQ 239

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLS 291
             +Q++++ NI   L    G  N        LN D Q   ++ + P   ++ + RS +  
Sbjct: 240 MKVQNDLQNNIQSLLEQVFGPGNVIVRASVNLNFDKQVQDKVEWQPVIDNNGIIRSTQTI 299

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           K+     ++   +      N P  S           +  K +   NYEIN      T   
Sbjct: 300 KEIANGSSN--GAPAGTATNNPPGSTTYTTQNNGNSSYSKTDTTINYEINQIKTTLTSAQ 357

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
            K++ +S++VVVN   LT             +   ++  +VS A G    +  ++++  +
Sbjct: 358 GKIQNISLSVVVNNSNLT------------PAMKQQLTDLVSNAAG---GKNVSVSVMGI 402

Query: 412 DFLE---NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
            F     NQ+ N+G     ++      +  ++ ALV   G            R    +  
Sbjct: 403 KFNNDLLNQMKNNGKQSFPYV------WLIILGALVLAGGVFYAM-----KKRSKLAVPS 451

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
           AK  E                         I++    +DI  H    + +          
Sbjct: 452 AKSEEA------------------------ISMVEPLEDIEVHDERDEKK---------- 477

Query: 529 LRLLHMIEINEERFAKILRKWARSE 553
            ++   I+   +  A+++R W   E
Sbjct: 478 KQIEKFIKQKPDIVAQLIRTWLNEE 502


>gi|90415352|ref|ZP_01223286.1| flagellar protein [marine gamma proteobacterium HTCC2207]
 gi|90332675|gb|EAS47845.1| flagellar protein [marine gamma proteobacterium HTCC2207]
          Length = 599

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 132/551 (23%), Positives = 222/551 (40%), Gaps = 28/551 (5%)

Query: 21  RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80
           R  + A +  + + +F+ A  ++  P Y  +Y  L  SD      AL+ A+   RI  + 
Sbjct: 57  RKAMPAIIAFLSVAVFLIAYSWMQDPVYRTVYPGLSESDRQAAFEALAGADFKARIDSST 116

Query: 81  SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140
             + VP S   +ARI LAA+GLP   +  G        S   + FM+++  V A+E E+A
Sbjct: 117 GELKVPDSRYHEARIFLAARGLPQEGTTGGISGLSDEASMTSSQFMEQVRYVSAMEQELA 176

Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS--VYKSAEAIRHLVAAA 198
           R+I  I+ I +ARVH+  P    F +      ASV++             EAI H+V+++
Sbjct: 177 RSITQINTIRSARVHLASPKQSVFVRNRTPAKASVVVSPYPGRLVSRSQVEAITHMVSSS 236

Query: 199 VPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVD 256
           VP L   DV V+D  GKLLT         +    +   Q ++      I+  L   +G+ 
Sbjct: 237 VPYLAAEDVVVVDQRGKLLTDANNFASMQLNSAQMEHKQRLEETYRNRIDALLMPVVGMG 296

Query: 257 NFRSAVVAELNMDTQQIREIVYD--PDSKVERSIRLS--KDAQRSETSQPESAV-TVEQN 311
           N R+ V  +++   ++     YD   +    RS  LS  +DA  S    P +   TV  N
Sbjct: 297 NVRAEVDIQVDYTEEESTYEEYDGNNNGPKARSEVLSLDQDAVSSAEGIPGATTNTVPLN 356

Query: 312 MPHVSDRKVPLPRSLEN--TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369
              + + ++          T       NYE++            +ER+S+AVV+N+    
Sbjct: 357 ATAILNGQLDGSAEDGGLRTSSSTTTRNYEMDRTVRHVKRQGGSVERISVAVVINEPVAQ 416

Query: 370 EVLGRSADQGK--IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVS 427
           E     A + K   +  L   + +V    G +  RGD +TI S  F     F S      
Sbjct: 417 EGGVNEAGESKGFSELELERFSDLVKGVVGFDGERGDVVTIVSATFETPVPFKS------ 470

Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISS 487
             DI       VI+ +  L   ++  F+ L  +R +         E              
Sbjct: 471 --DIAWYENGQVISGIKTLGAAIMFLFILLSVVRPVIKAYLPAVDE-NLIDETQVSSKDG 527

Query: 488 AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS------DLRLLHMIEINEER 541
            +    M    +    S +DI +  +  +S I++ +   +         +  ++  +  R
Sbjct: 528 ELNDEEMRLIEMRDGESLEDIKAKLKPKKSTISAEMLDTANTYDDKVALVRLLVAEDSGR 587

Query: 542 FAKILRKWARS 552
            A +L+K  R 
Sbjct: 588 VANVLKKMIRP 598


>gi|83815862|ref|YP_446715.1| flagellar M-ring protein FliF [Salinibacter ruber DSM 13855]
 gi|83757256|gb|ABC45369.1| flagellar M-ring protein FliF [Salinibacter ruber DSM 13855]
          Length = 532

 Score =  323 bits (829), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 113/562 (20%), Positives = 220/562 (39%), Gaps = 49/562 (8%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L ++ QF      L   + + L  + +  I L +   ++ + P Y  L+  LE    NR+
Sbjct: 5   LARIQQFLGR---LSTGQQVGLGLLAVGTIALLVGTAYWSSQPDYALLFGDLEPEAANRV 61

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L E    + + + GS++ VP + + + R+  ++ G       +GYELFD+  + G+T
Sbjct: 62  VSRLKEEGTPYELRNQGSAVYVPRASMHELRLQFSSDG-TIDDGQTGYELFDQ-GTLGMT 119

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
            FMQ++   RALEGE+A+T+ SI  +  ARVH+V P+   F       +ASV++     S
Sbjct: 120 DFMQKLNSKRALEGELAQTVSSIGQVEGARVHLVEPEDDPFEAQQVEASASVVLSLTGGS 179

Query: 184 VYK-SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER---NILGKSLSIVQAIQH 239
           + +   + +  LVA AV  L    V V+D  G +L+          +    + + ++++ 
Sbjct: 180 LSQAQVQGVTQLVAGAVEKLSPSQVKVIDQDGNMLSDPNAADENVQMTSTQIDMQRSVEE 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           ++       L   +G DN    V  EL+ D     + + DP+S    S    ++      
Sbjct: 240 QLMKQGQSMLREVVGPDNAVVRVSTELDFDRTVTEKNLVDPESATVVSEERMREE----- 294

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
                                      E  +      N+E++  +  +      + RL++
Sbjct: 295 -----------------------GGGDEAGNSNSVVRNFEVSRTTKRSEKSVGDVSRLTV 331

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           +VVV++ R T   G    + +    +A+I  +V  A G +  RGD  TI       +   
Sbjct: 332 SVVVDQERTTGPDGEPTYEPRSQEEIAKIESLVKNAVGFDEERGDRFTIQQTRLDTDAGP 391

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG--EVGGK 477
                     +   R +   +   + LV      ++    ++ L    + +    +    
Sbjct: 392 AGPVAGDGGGETPMRLY---LRYGLILVAIGAAVWVARSLVQALTATPEEQPTPLQADES 448

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR------L 531
             +       AV  G  P   +      ++         ++++     + + R      +
Sbjct: 449 RQVEGRTADGAVEEGDGP-AALQETEEEEESLVKDDMYTNKLSDEAKARLEARSEMFEEI 507

Query: 532 LHMIEINEERFAKILRKWARSE 553
              +E N E+ A ++R W   +
Sbjct: 508 QDQVEENPEQTADLIRSWLVED 529


>gi|294508650|ref|YP_003572709.1| flagellar M-ring protein [Salinibacter ruber M8]
 gi|294344979|emb|CBH25757.1| Flagellar M-ring protein [Salinibacter ruber M8]
          Length = 532

 Score =  323 bits (829), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 113/562 (20%), Positives = 220/562 (39%), Gaps = 49/562 (8%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L ++ QF      L   + + L  + +  I L +   ++ + P Y  L+  LE    NR+
Sbjct: 5   LARIQQFLGR---LSTGQQVGLGLLAVGTIALLVGTAYWSSQPDYALLFGDLEPEAANRV 61

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L E    + + + GS++ VP + + + R+  ++ G       +GYELFD+  + G+T
Sbjct: 62  VSRLKEEGTPYELRNQGSAVYVPRASMHELRLQFSSDG-TIDDGQTGYELFDQ-GTLGMT 119

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
            FMQ++   RALEGE+A+T+ SI  +  ARVH+V P+   F       +ASV++     S
Sbjct: 120 DFMQKLNSKRALEGELAQTVSSIGQVEGARVHLVEPEDDPFEAQQVEASASVVLSLTGGS 179

Query: 184 VYK-SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER---NILGKSLSIVQAIQH 239
           + +   + +  LVA AV  L    V V+D  G +L+          +    + + ++++ 
Sbjct: 180 LSQAQVQGVTQLVAGAVEKLSPSQVKVIDQDGNMLSDPNAADENVQMTSTQIDMQRSVEE 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           ++       L   +G DN    V  EL+ D     + + DP+S    S    ++      
Sbjct: 240 QLMKQGQSMLREVVGPDNAVVRVSTELDFDRTVTEKNLVDPESATVVSEERMREE----- 294

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
                                      E  +      N+E++  +  +      + RL++
Sbjct: 295 -----------------------GGGDEAGNSNSVVRNFEVSRTTKRSEKSVGDVSRLTV 331

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           +VVV++ R T   G    + +    +A+I  +V  A G +  RGD  TI       +   
Sbjct: 332 SVVVDQERTTGPDGEPTYEPRSQEEIAKIESLVKNAVGFDEERGDRFTIQQTRLDTDAGP 391

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG--EVGGK 477
                     +   R +   +   + LV      ++    ++ L    + +    +    
Sbjct: 392 AGPVAGDGGGETPMRLY---LRYGLILVAIGAAVWVARSLVQALTATPEEQPTPLQADES 448

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR------L 531
             +       AV  G  P   +      ++         ++++     + + R      +
Sbjct: 449 RQVEGRTADGAVEEGDGP-AALQETEEEEESLVKDDIYTNKLSDEAKARLEARSEMFEEI 507

Query: 532 LHMIEINEERFAKILRKWARSE 553
              +E N E+ A ++R W   +
Sbjct: 508 QDQVEENPEQTADLIRSWLVED 529


>gi|114562360|ref|YP_749873.1| flagellar MS-ring protein [Shewanella frigidimarina NCIMB 400]
 gi|114333653|gb|ABI71035.1| flagellar M-ring protein FliF [Shewanella frigidimarina NCIMB 400]
          Length = 558

 Score =  323 bits (829), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 104/557 (18%), Positives = 221/557 (39%), Gaps = 24/557 (4%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +               R +I+   + + + L +    +   P Y  L  K+E +++  + 
Sbjct: 15  ENKSGLLGGVGGADMMRQVIMILALAICLALAVFVMMWAQEPDYRPL-GKMETAEMILVL 73

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L +  ID++I+ +   + VP     + ++ L+  G+ SS+  + Y   ++ + FG++ 
Sbjct: 74  DVLDKNQIDYQINVD--VVKVPEDKYQEVKLLLSRAGVQSSTQANDY--LNQDSGFGVSQ 129

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
            M++    ++ E  +AR I+ +  I  A+V + +P    F +  ++P+A+V++      +
Sbjct: 130 RMEQARLKQSQEQNLARAIEELKSISRAKVILALPKENVFARNASKPSATVVVNVRRGGL 189

Query: 185 -YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEI 241
             +  +AI  +V +AV  L+   VTV DS G+LL +   +   +   +   +VQ  + E 
Sbjct: 190 GQEEIDAIVDIVGSAVQGLEPARVTVTDSNGRLLNSGSQDGASSRARREQELVQQQEAEY 249

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
              I   L   LG +NF S V   +N    +     + PD    RS  + +     + S 
Sbjct: 250 RKKIESILMPILGPENFTSQVDVNMNFTAVEQTAKRFSPDLPAIRSEMIIERNSSGQNS- 308

Query: 302 PESAVTVEQNMPHVSD-----RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
                    N P +              ++     KE   NYE++T    T      + R
Sbjct: 309 -GGIPGALSNQPPMESDIPQVAGEATASTMSGDSSKEATRNYELDTTISHTRQQIGVVRR 367

Query: 357 LSIAVVVN-KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           +S++V +N K    +  G  A   + +  L  I +++  A G +++RGD + + ++ F++
Sbjct: 368 VSVSVAINFKPGQVDENGVVARVPRTEQELTNIRRLLEGAVGFSTQRGDALEVVTVPFMD 427

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
             +       +       R     + A+V LV  L V       L++L N +      + 
Sbjct: 428 QLIEALPEPDMWEEPWFWRAIKLALGAIVILVLILAV---VRPMLKKLTNPNG-----IN 479

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
               + P    + +      +    L++   +            N +        +  ++
Sbjct: 480 MPDDIRPGHELAEIEDQYAADTLGMLNTKEAEYSYADDGSIQIPNLHKDDDMIKAIRALV 539

Query: 536 EINEERFAKILRKWARS 552
               E   ++++ W + 
Sbjct: 540 ANEPELSTQVIKNWLQD 556


>gi|295319980|gb|ADG00358.1| fliF; flagellar M-ring protein FliF [Clostridium botulinum F str.
           230613]
          Length = 526

 Score =  323 bits (829), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 105/565 (18%), Positives = 226/565 (40%), Gaps = 54/565 (9%)

Query: 4   LDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           +++L +FFK      T   + + +  + + L  I   +A   +     Y  L+  ++ +D
Sbjct: 1   MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              +   L +  ++ ++   G++I VP   V + R+ + ++ +P ++ + G+E+ DK   
Sbjct: 61  SGTVLQKLKDKKVEAKVE--GNNILVPKDKVDELRMQMLSE-VPLTNGSQGFEILDKSQ- 116

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           FG T    +I   RAL+GE+ RTI+    +  +RVH+V+P+  +F K      ASV +  
Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNSRVHLVLPEETAFVKETQPGRASVTLNL 176

Query: 180 INPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--------EMERNILGK 229
                   +  ++I  LV+ +V N+   +V V+D+   LLT N        E       K
Sbjct: 177 KQGQTLSKEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLTKNLFDASGSLEEATTSAEK 236

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
              + +  + +++  +   L A  G D  +  +  +L+ D  +   + YDP + V  S  
Sbjct: 237 QQQLQKNYEKDLQNRLVSMLEAVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNVVV-SEH 295

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
             K+  ++      +  +V  N  ++ +R        E + + E   NYEI+     +  
Sbjct: 296 SIKEKNQNNAGGNNTNGSVVDN--NMVNRTTQNNNGSETSSRDENTKNYEISKTQQDSIK 353

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
               ++RL+ ++V++                 +   + +  +  +A G + +RGDTI + 
Sbjct: 354 APGSVKRLTASIVLDGN-------------IDEETRSAVRNLAVSAIGYDEKRGDTINVE 400

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
            + F                          +   + L   LL+  +    +++ +  ++ 
Sbjct: 401 GLPFDTAAKDKVKKDLEDMQKSEKTKERIKLFTAIGLGVLLLLGAIIFFIIKKRNEDEEY 460

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
           ++ E G   ++      +       P     +D   QD  +H  N               
Sbjct: 461 EEDEEGLDILIDDNDSETKQVPKFKP-----IDLETQDEKTHVENE-------------- 501

Query: 530 RLLHMIEINEERFAKILRKWARSEI 554
            +    +   ++ A+I++ W   + 
Sbjct: 502 -IRKYAKDKPDQVAEIIKSWLAEDE 525


>gi|157376198|ref|YP_001474798.1| flagellar MS-ring protein [Shewanella sediminis HAW-EB3]
 gi|157318572|gb|ABV37670.1| flagellar M-ring protein FliF [Shewanella sediminis HAW-EB3]
          Length = 569

 Score =  323 bits (828), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 103/536 (19%), Positives = 218/536 (40%), Gaps = 36/536 (6%)

Query: 37  MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIH 96
           +    +   P Y  L  K+   ++ ++   L +  I + I  +   + VP       ++ 
Sbjct: 53  VFVMLWAQEPEYRPL-GKMSTQEMIQVLDVLDKNKIKYEIDVD--VVKVPEDKYQDVKLM 109

Query: 97  LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHI 156
           L  +G+ S++S+S Y    + + FG++  M++     + E  +AR I+ +  +  A+V +
Sbjct: 110 LTREGVDSAASSSDY--LSQDSGFGVSQRMEQARLKHSQELNLARAIEELRNVTRAKVIL 167

Query: 157 VMPDMGSFRKIGARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
            +P    F +  ++P+A+V+I A   S+  +  ++I  +VA+AV  L+   VTV DS G+
Sbjct: 168 AIPKENVFARNRSKPSATVVINARRGSLGQEEVDSIVDIVASAVQGLEPTRVTVTDSNGR 227

Query: 216 LLTANEME--RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI 273
           LL +   +       +   +VQ  + E    +   L   LG +NF S V   ++  + + 
Sbjct: 228 LLNSGSQDAVSARARREQELVQQKESEYRNKVESILMPILGPENFTSQVDVSMDFTSVEQ 287

Query: 274 REIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV---------SDRKVPLPR 324
               Y+PD    RS    ++     T+          N P +         +++      
Sbjct: 288 TAKRYNPDLPALRSEMTVENNSNGATT--GGIPGALSNQPPMEANIPQEALNNQADAESN 345

Query: 325 SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN-KGRLTEVLGRSADQGKIDS 383
           S   +  +E   N+E++T    T      + R+S++V V+ K       G+ +   + + 
Sbjct: 346 SSSGSSHREATRNFELDTTISHTRQQIGVVRRVSVSVAVDFKSGSAGEDGQVSRVPRTEQ 405

Query: 384 YLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINAL 443
            L+ I +++  A G  ++RGD I + ++ F++  + +    ++       R     +  +
Sbjct: 406 ELSNIRRLLEGAVGFTTQRGDIIEVVTVPFMDQLIEDVPAPELWEQPWFWRAIKLALGGI 465

Query: 444 VFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG--GKSILSPPPISSAVTTGLM--PNDNI 499
           V LV  L V       L+RL   D  K  +    G  +       ++ T G++  P    
Sbjct: 466 VILVLILAV---VRPMLKRLIYPDSVKLPDEPRFGDELAEIEDQYASDTLGMLNRPEAEY 522

Query: 500 ALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           +       +          I +         +  ++    E   ++++ W +   +
Sbjct: 523 SYADDGSILIPDLHKDDDMIKA---------IRALVANEPELSTQVVKGWLQDNEQ 569


>gi|168183269|ref|ZP_02617933.1| flagellar M-ring protein FliF [Clostridium botulinum Bf]
 gi|237796102|ref|YP_002863654.1| flagellar MS-ring protein [Clostridium botulinum Ba4 str. 657]
 gi|182673721|gb|EDT85682.1| flagellar M-ring protein FliF [Clostridium botulinum Bf]
 gi|229262258|gb|ACQ53291.1| flagellar M-ring protein FliF [Clostridium botulinum Ba4 str. 657]
          Length = 526

 Score =  323 bits (828), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 105/565 (18%), Positives = 224/565 (39%), Gaps = 54/565 (9%)

Query: 4   LDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           +++L +FFK      T   + + +  + + L  I   +A   +     Y  L+  ++ +D
Sbjct: 1   MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              +   L +  ++ ++   G++I VP   V + R+ + ++ +P ++ + G+E+ DK   
Sbjct: 61  SGTVLQKLKDKKVEAKVE--GNNILVPKDQVDELRMQMLSE-VPLTNGSQGFEILDKSQ- 116

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           FG T    +I   RAL+GE+ RTI+    +   RVH+V+P+  +F K      ASV +  
Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNTRVHLVLPEETAFVKETQPGRASVTLNL 176

Query: 180 INPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--------EMERNILGK 229
                   +  ++I  LV+ +V N+   +V V+D+   LLT N        E       K
Sbjct: 177 KQGQNLSKEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLTKNLFDASGSLEEATTSAEK 236

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
              + +  + +++  +   L A  G D  +  +  +L+ D  +   + YDP + V  S  
Sbjct: 237 QQQLQKNYEKDLQNRLVSMLEAVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNVVV-SEH 295

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
             K+  ++      +  +V  N  ++ +R        E + + E   NYEI+     +  
Sbjct: 296 SIKEKNQNNAGGNNTNGSVVDN--NMVNRTTQNNNGSETSSRDENTKNYEISKTQQDSIK 353

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
               ++RL+ ++V++                 +   + +  +  +A G + +RGDTI + 
Sbjct: 354 APGSVKRLTASIVLDGN-------------IDEETRSAVRNLAVSAIGYDEKRGDTINVE 400

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
            + F                          +   + L   LL+  +    +++ +  ++ 
Sbjct: 401 GLPFDTAAKDKVKKDLEDMQKTEKTKERIKLFTAIGLGVLLLLGAIIFFIIKKRNEDEEY 460

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
           +  E G   ++      +       P     +D   QD  +H  N               
Sbjct: 461 EDDEEGLDILIDDNDSETKQVPKFKP-----IDLETQDEKTHVENE-------------- 501

Query: 530 RLLHMIEINEERFAKILRKWARSEI 554
            +    +   ++ A+I++ W   + 
Sbjct: 502 -IRKYAKDKPDQVAEIIKSWLAEDE 525


>gi|254299704|ref|ZP_04967153.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 406e]
 gi|157809299|gb|EDO86469.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 406e]
          Length = 532

 Score =  323 bits (828), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 112/513 (21%), Positives = 217/513 (42%), Gaps = 22/513 (4%)

Query: 45  SPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPS 104
             +Y  L+   E   ++ +   L    I +RI  +   + V  S V +AR+ LAA+G+ +
Sbjct: 33  QANYKPLFGAREPVQLDDVVSTLDAQRIPYRIHPDTGQVLVARSDVARARMTLAARGV-T 91

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           + +  G E  D+ +  G + F+Q++   R LE E+A++I ++  +  ARVH+ +    SF
Sbjct: 92  AKAAPGLEQIDQDDPLGTSQFVQDVRFRRGLESELAQSIATLEPVERARVHLSIAKSSSF 151

Query: 165 RKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE 221
             +    +A+ ++  + P      +   A+ +LVA +VPNL    V+V+D  G  L+A  
Sbjct: 152 VMMDGDKSAASVVLTLKPGRRLAKEQIAAVINLVAGSVPNLAPAKVSVVDQHGAFLSARV 211

Query: 222 MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD 281
                L  +  I    + ++  N+   LA  LG+ NFR +V A +N D  +     +   
Sbjct: 212 DLDGDLTGTDEIAARFREDVTRNVEDLLAPSLGLGNFRVSVTALVNNDRVEETREQFG-- 269

Query: 282 SKVERSIRLSKDAQRSETSQPESAVTVEQNMPH-VSDRKVPLPRSLENTDKKEEQSNYEI 340
                + ++  +A R+E ++   A+ V  ++ +   D     P++   T +      +  
Sbjct: 270 ----EAPKVMNEATRNEQNRDRVALGVPGSLSNRPVDVPASEPQADGGTQRAATTRQFAY 325

Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400
           +           +L++LS+AVV+N       +  +  +      L  I++I+ +  GI+ 
Sbjct: 326 DRNITQIKRGRGQLKKLSVAVVLN-----NAVSPAKGKPWSPEQLRRIDEILRSGLGIDK 380

Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460
           +RGD + ++S+DF       +        D L +    +  AL  L G L +    L  L
Sbjct: 381 QRGDQLIVSSLDFA---APAAAEPWWKERDTLEQGGWYLTYALAALFGYLALARPMLRML 437

Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520
           ++               S L  P    A       +D     ++   +        +   
Sbjct: 438 QQWVQHRYGAPAAAASASRLPAPEGGHAQAALPAADDARPPLAAMLPLLDDVELPPADSG 497

Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             V       L  + E   ER A+++++W R++
Sbjct: 498 VEVL---IDHLRSLSEKEPERVAEVVKQWIRND 527


>gi|168180913|ref|ZP_02615577.1| flagellar M-ring protein fliF [Clostridium botulinum NCTC 2916]
 gi|182668331|gb|EDT80310.1| flagellar M-ring protein fliF [Clostridium botulinum NCTC 2916]
          Length = 526

 Score =  323 bits (828), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 108/570 (18%), Positives = 225/570 (39%), Gaps = 64/570 (11%)

Query: 4   LDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           +++L +FFK      T   + + +  + + L  I   +A   +     Y  L+  ++ +D
Sbjct: 1   MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              +   L +  ++ ++   G++I VP   V + R+ + ++ +P ++ + G+E+ DK   
Sbjct: 61  SGTVLQKLKDKKVEAKVE--GNNILVPKDKVDELRMQMLSE-VPLTNGSQGFEILDKSQ- 116

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           FG T    +I   RAL+GE+ RTI+    +   RVH+V+P+  +F K      ASV +  
Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNTRVHLVLPEETAFVKETQPGRASVTLNL 176

Query: 180 INPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--------EMERNILGK 229
                   +  ++I  LV+ +V N+   +V V+D+   LLT N        E       K
Sbjct: 177 KQGQTLSKEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLTKNLFDASGSLEEATTSAEK 236

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
              + +  + +++  +   L A  G D  +  +  +L+ D  +   + YDP + V  S  
Sbjct: 237 QQQLQKNYEKDLQNRLVSMLEAVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNVVV-SEH 295

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
             K+  ++      +  +V  N  ++ +R        E + + E   NYEI+     +  
Sbjct: 296 SIKEKNQNNAGGNNTNGSVVDN--NMVNRTTQNNNGSETSSRDENTKNYEISKTQQDSIK 353

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
               ++RL+ ++V++                 +   + +  +  +A G + +RGDTI + 
Sbjct: 354 APGSVKRLTASIVLDGN-------------IDEETRSAVRNLAVSAIGYDEKRGDTINVE 400

Query: 410 SMDFLENQLFN-----SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
            + F                +        + F  +   ++ L+G ++   +         
Sbjct: 401 GLPFDTAAKDKVKKDLEDMQKAGKTKERIKLFTAIGLGVLLLLGAIIFFIIKKR------ 454

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
           N D+  + +  G  IL     S              +D   QD  +H  N          
Sbjct: 455 NEDEEYEEDEEGLDILIDDNDSETKQVPKFKP----IDLETQDEKTHVENE--------- 501

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEI 554
                 +    +   ++ A+I++ W   + 
Sbjct: 502 ------IRKYAKDKPDQVAEIIKSWLAEDE 525


>gi|224438214|ref|ZP_03659149.1| flagellar MS-ring protein [Helicobacter cinaedi CCUG 18818]
 gi|313144660|ref|ZP_07806853.1| flagellar basal body M-ring protein FliF [Helicobacter cinaedi CCUG
           18818]
 gi|313129691|gb|EFR47308.1| flagellar basal body M-ring protein FliF [Helicobacter cinaedi CCUG
           18818]
          Length = 569

 Score =  323 bits (827), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 121/574 (21%), Positives = 230/574 (40%), Gaps = 30/574 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNS----PHYDNLYVKLEVS 58
           I +Q+ +         + RI+IL + +++   L     F V +     +YD L+  L   
Sbjct: 6   IFEQISKVLNKLNK--KQRIIILTTFVVIIAFLTYLVLFRVETKNEYENYDVLFSNLNPE 63

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
           D   I   L +  I ++I  + + I VP   V + RI L + GLP +S N G+++  + N
Sbjct: 64  DSAAILQRLQQDKIPYKIPQD-NIILVPKDKVYEQRISLGSLGLPKTSKNVGFDILLENN 122

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178
             G T F Q++  + A + E+ARTI+S+  I  A V+I MP    F + G  P+ASV I 
Sbjct: 123 -VGETPFTQDMKYLVAKQNELARTIESLKPIEKAIVNISMPKESLFVQGGHPPSASVKIT 181

Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIV 234
             +      +    I+HLVAAAV  L   +V +++  G+LL  ++   +++ LGK  +  
Sbjct: 182 VQDNMFLSIEQVVGIKHLVAAAVERLTPQNVKIINQDGELLGEDDEATQQSALGKQAAFQ 241

Query: 235 QAIQHEIEMNINKALAAFLGV---DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
           +  Q   E  +   +  FL     D   + V  + +   ++    V+  +  V  +    
Sbjct: 242 RKYQQNAENAMEAKIVKFLKPSVGDGVEAQVTMDFDFSVRKSVAEVFGQNPVVRGTREYE 301

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           K+ +     Q      V  N+  V   K      +E   + E   N EI+          
Sbjct: 302 KERKGFRPPQIGGVPGVVSNIGPVQGLKD--DEMMEWEKESEVVINNEIDKTVSDIKEHF 359

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQ-----GKIDSYLAEINKIVSAATGINSRRGDTI 406
             L+R+S +V+++ G   E +G   +       +    + +  + V  A G N  RGD +
Sbjct: 360 GVLKRVSASVMID-GTYKEAVGEDGEPRLEYIPRSQEEMDKFLEGVKKAIGYNEARGDQV 418

Query: 407 TITSMDFLENQLFNSGTVQVS-FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465
            + +M F  + L          F D + R+    +  L +++  +++        +++  
Sbjct: 419 EVINMQFRNSLLDYRPKDSWELFSDKVERYLGPFMPLLKYVIVAVIIFIF----YKKIVA 474

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
               +  EV  +       +          N    L    +D    S       +S   +
Sbjct: 475 PFAERMLEVQEEEDDDIESLMQIDDGEDDVNKFSELRKRVEDQLGLSSGFDE--DSIKYE 532

Query: 526 QSDLRLLHMIEINEERFAKILRKWARSEIEDRYT 559
               ++ ++I    +    + +   + E++    
Sbjct: 533 VLLEKMRNVIAERPQEIGALFQTLIKDELDITEG 566


>gi|322806993|emb|CBZ04563.1| flagellar M-ring protein FliF [Clostridium botulinum H04402 065]
          Length = 526

 Score =  323 bits (827), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 105/565 (18%), Positives = 225/565 (39%), Gaps = 54/565 (9%)

Query: 4   LDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           +++L +FFK      T   + + +  + + L  I   +A   +     Y  L+  ++ +D
Sbjct: 1   MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              +   L +  ++ ++   G++I VP   V + R+ + ++ +P ++ + G+E+ DK   
Sbjct: 61  SGTVLQKLKDKKVEAKVE--GNNILVPKDKVDELRMQMLSE-VPLTNGSQGFEILDKSQ- 116

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           FG T    +I   RAL+GE+ RTI+    +   RVH+V+P+  +F K      ASV +  
Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNTRVHLVLPEETAFVKETQPGRASVTLNL 176

Query: 180 INPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--------EMERNILGK 229
                   +  ++I  LV+ +V N+   +V V+D+   LLT N        E       K
Sbjct: 177 KQGQTLSKEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLTKNLFDASGSLEEATTSAEK 236

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
              + +  + +++  +   L A  G D  +  +  +L+ D  +   + YDP + V  S  
Sbjct: 237 QQQLQKNYEKDLQNRLVSMLEAVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNVVV-SEH 295

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
             K+  ++      +  +V  N  ++ +R        E + + E   NYEI+     +  
Sbjct: 296 SIKEKNQNNAGGNNTNGSVVDN--NMVNRTTQNNNGSETSSRDENTKNYEISKTQQDSIK 353

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
               ++RL+ ++V++                 +   + +  +  +A G + +RGDTI + 
Sbjct: 354 APGSVKRLTASIVLDGN-------------IDEETRSAVRNLAVSAIGYDEKRGDTINVE 400

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
            + F                          +   + L   LL+  +    +++ +  ++ 
Sbjct: 401 GLPFDTAAKDKVKKDLEDMQKAEKTKERIKLFTAIGLGVLLLLGAIIFFIIKKRNEDEEY 460

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
           ++ E G   ++      +       P     +D   QD  +H  N               
Sbjct: 461 EEDEEGLDILIDDNDSETKQVPKFKP-----IDLETQDEKTHVENE-------------- 501

Query: 530 RLLHMIEINEERFAKILRKWARSEI 554
            +    +   ++ A+I++ W   + 
Sbjct: 502 -IRKYAKDKPDQVAEIIKSWLAEDE 525


>gi|170760264|ref|YP_001787983.1| flagellar MS-ring protein [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407253|gb|ACA55664.1| flagellar M-ring protein FliF [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 526

 Score =  323 bits (827), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 104/565 (18%), Positives = 226/565 (40%), Gaps = 54/565 (9%)

Query: 4   LDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           +++L +FFK      T   + + +  + + L  I   +A   +     Y  L+  ++ +D
Sbjct: 1   MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              +   L +  ++ ++   G++I VP   V + R+ + ++ +P ++ + G+E+ DK   
Sbjct: 61  SGTVLQKLKDKKVEAKVE--GNNILVPKDKVDELRMQMLSE-VPLTNGSQGFEILDKSQ- 116

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           FG T    +I   RAL+GE+ RTI+    +   RVH+V+P+  +F K      ASV +  
Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNTRVHLVLPEETAFVKETQPGRASVTLNL 176

Query: 180 INPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--------EMERNILGK 229
                   +  ++I  LV+ +V N+   +V V+D+   LLT N        E       K
Sbjct: 177 KQGQTLSKEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLTKNLFDASGSLEEATTSAEK 236

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
              + +  + +++  +   L +  G D  +  +  +L+ D  +   + YDP + V  S  
Sbjct: 237 QQQLQKNYEKDLQNRLVSMLESVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNVVV-SEH 295

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
             K+  ++      +  +V  N  ++ +R        E + + E   NYEI+     +  
Sbjct: 296 SIKEKNQNNAGGNNTNGSVVDN--NMVNRTTQNNNGSETSSRDENTKNYEISKTQQDSIK 353

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
               ++RL+ ++V++                 +   + +  +  +A G + +RGDTI++ 
Sbjct: 354 APGSVKRLTASIVLDGN-------------IDEETRSAVRNLAVSAIGYDEKRGDTISVE 400

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
            + F                          +   + L   LL+  +    +++ +  ++ 
Sbjct: 401 GLPFDTAAKDKVKKDLEDMQKSEKTKERIKLFTAIGLGVLLLLGAIIFFIIKKRNEDEEY 460

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
           ++ E G   ++      +       P     +D   QD  +H  N               
Sbjct: 461 EEDEEGLDILIDDNDSETKQVPKFKP-----IDLETQDEKTHVENE-------------- 501

Query: 530 RLLHMIEINEERFAKILRKWARSEI 554
            +    +   ++ A+I++ W   + 
Sbjct: 502 -IRKYAKDKPDQVAEIIKSWLAEDE 525


>gi|307721566|ref|YP_003892706.1| flagellar M-ring protein FliF [Sulfurimonas autotrophica DSM 16294]
 gi|306979659|gb|ADN09694.1| flagellar M-ring protein FliF [Sulfurimonas autotrophica DSM 16294]
          Length = 569

 Score =  322 bits (826), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 132/569 (23%), Positives = 241/569 (42%), Gaps = 28/569 (4%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH---YDNLYVKLEVSD 59
           +  QL   +   T   + +I+I A+V+ +   L     F         Y+ L+  L  +D
Sbjct: 6   LFSQLSVLYAKLTK--QQKIIIAAAVVGIVAFLIFLVVFTAKKTSGSAYEVLFDALTPAD 63

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
             ++   L + NI ++I  N + I VP  +V K RI +A+ G+P +S   G+ELFDK   
Sbjct: 64  AAKVVEQLEKDNITYKIEAN-NVIKVPRDVVYKERISIASLGIPKNSG-VGFELFDKQE- 120

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           FG TSF Q+I  +RALEGE++RTI ++S +  A V + +P    F      PTASVM++ 
Sbjct: 121 FGATSFDQKIKHLRALEGELSRTITALSPVEKATVSLALPKDTLFVSKQVDPTASVMVQL 180

Query: 180 INPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLSIV 234
            +  +   K    I++LV+AAVP L   +V ++DS G  L  N+       +        
Sbjct: 181 ADGRMLTPKQIRGIKNLVSAAVPKLKSSNVMLIDSDGVTLGDNDEMAQMSELSVVQQKYK 240

Query: 235 QAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293
              + + +  I   +A F+ G D   + V  E +   +      YDP++ V RS +++++
Sbjct: 241 IKEEKKRQEKIIDVIAPFVGGKDKVVAQVTIEFDFSQKNSTSEKYDPEN-VVRSEQVNEE 299

Query: 294 AQRSETSQPESAVTVEQNMPHVSD-RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
            +  E S P+    V   + ++   + +   +++E   K    +NYE+      T     
Sbjct: 300 KR--EGSSPKEVGGVPGTVSNIGPVQGLASNKTVEKYSKNSGTTNYEVGKTVSTTKSQFA 357

Query: 353 KLERLSIAVVVNKGRLT--EVLGRSADQ----GKIDSYLAEINKIVSAATGINSRRGDTI 406
           +++R++ AVVV+    T  +  G   ++       D+ +  +  + S + GI+  RGD I
Sbjct: 358 RIKRITAAVVVDGKYKTKVDKDGNPTEEMEYVPLDDADINALTSLASRSIGIDPNRGDQI 417

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
           ++ ++ F               +     + A       +L   +L+  L    +    + 
Sbjct: 418 SVQNLQFERALTNKGVQGVNQAIIFSETYLAPFSGLFKYLFVLILLFILYKKVIAPFADK 477

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
                 E   + +++P           +      +    +D    S N     +    + 
Sbjct: 478 MLEISKE--DEELVAPSLEIEEEEGEDLVEKVQTMRKKVEDQLGMSSNFNE--DDLKHEV 533

Query: 527 SDLRLLHMIEINEERFAKILRKWARSEIE 555
              ++  M E   E  A +L      E E
Sbjct: 534 ILEKVRTMAEDTPEEVASLLEALLSEESE 562


>gi|255321871|ref|ZP_05363021.1| flagellar M-ring protein FliF [Campylobacter showae RM3277]
 gi|255300975|gb|EET80242.1| flagellar M-ring protein FliF [Campylobacter showae RM3277]
          Length = 564

 Score =  322 bits (826), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 123/568 (21%), Positives = 227/568 (39%), Gaps = 39/568 (6%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH----YDNLYVKLE 56
           M     + Q  +   +L   + L+ A  +++ +   +      +S      Y  L+    
Sbjct: 1   MDFKTAIQQIGQVYHNLSLRQRLVAAGSVVLVVGFLVFLSIHKSSNENYDGYSVLFENTS 60

Query: 57  VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
            +D   I   L +  + ++I + G +I VP+S V + RI +A+ G+       G+E+FDK
Sbjct: 61  AADSALIIQQLEKDKVKYKILNEG-TILVPNSDVYRERISIASLGILKDGK-VGFEIFDK 118

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
              FG T   Q++   RALEGE+ARTI+S++ I  A V I +P    F +    P+AS++
Sbjct: 119 QE-FGATDAEQKVKFQRALEGELARTIESLAPINKAIVRIAIPKETIFTERATPPSASIV 177

Query: 177 IRAINPSV--YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLS 232
           +   +      K    I++LVAAAV NL    V ++   G  L   + E   + + + + 
Sbjct: 178 LNLKDGQSLNLKQITGIKNLVAAAVANLKPEQVKIVSQDGVPLGEEDGEYDSDQITQQIR 237

Query: 233 IVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
             +  +H +E  I   L+  + G D   + V  + +   +  +   +DP+S       + 
Sbjct: 238 YKRDAEHNLEEKIINVLSPIVGGSDKVVAKVTIDFDFARKDSQSETFDPNSVARSEQNVE 297

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           +  Q S+ ++ +       N+  V   +    +  E   K    +NYEI+ K        
Sbjct: 298 EKRQGSKEAEVQGVPGAVSNIGPVEGLQDG--KMKELYSKSSSTTNYEISKKVERVKDQF 355

Query: 352 YKLERLSIAVVVNKGRLT------EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
            K+ RLS AVVV+                 A        LA I+ ++  + G +  RGD 
Sbjct: 356 AKINRLSAAVVVDGKYENKKDEKGNPTSEIAYVPLDKEQLARIDALIRQSIGFDQNRGDE 415

Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465
           +T+++ +F         +   SF ++   +    +  L +L   +L+       +     
Sbjct: 416 VTVSNFEFQRQDGQTPASKVQSFFEL---YVVPFLPILKYLFVAILLYVFYKKVITPFMT 472

Query: 466 --IDDAKKGEVG-----------GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS 512
             ++D K+ E+              ++         V   L   DN   D    D+    
Sbjct: 473 KMLEDVKEEEIDLSENEVQLEDSEDTLEKFQAARKKVEEQLGIGDNFNEDDLRYDVLLEK 532

Query: 513 RNLQSRINSYVSKQSDLRLLHMIEINEE 540
             L  +  S       + L  MI+ + +
Sbjct: 533 MKLVVQDRSEEIA---VLLQDMIKNDSD 557


>gi|148380620|ref|YP_001255161.1| flagellar MS-ring protein [Clostridium botulinum A str. ATCC 3502]
 gi|153933327|ref|YP_001384906.1| flagellar MS-ring protein [Clostridium botulinum A str. ATCC 19397]
 gi|153935162|ref|YP_001388375.1| flagellar MS-ring protein [Clostridium botulinum A str. Hall]
 gi|148290104|emb|CAL84223.1| flagellar M-ring protein [Clostridium botulinum A str. ATCC 3502]
 gi|152929371|gb|ABS34871.1| flagellar M-ring protein FliF [Clostridium botulinum A str. ATCC
           19397]
 gi|152931076|gb|ABS36575.1| flagellar M-ring protein FliF [Clostridium botulinum A str. Hall]
          Length = 526

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 103/565 (18%), Positives = 221/565 (39%), Gaps = 54/565 (9%)

Query: 4   LDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           +++L +FFK      T   + + +  + + L  I   +A   +     Y  L+  ++ +D
Sbjct: 1   MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              +   L +  ++ ++   G++I VP   V + R+ + ++ +P ++ + G+E+ DK   
Sbjct: 61  SGTVLQKLKDKKVEAKVE--GNNILVPKDKVDELRMQMLSE-VPLTNGSQGFEILDKSQ- 116

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           FG T    +I   RAL+GE+ RTI+    +   RVH+V+P+  +F K      ASV +  
Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNTRVHLVLPEETAFVKETQPGRASVTLNL 176

Query: 180 INPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--------EMERNILGK 229
                   +  ++I  LV+ +V N+   +V V+D+   LLT N        E       K
Sbjct: 177 KQGQTLSKEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLTKNLFDASGSLEEATTSAEK 236

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
              + +  + +++  +   L A  G D  +  +  +L+ D  +   + YDP + V  S  
Sbjct: 237 QQQLQKNYEKDLQNRLVSMLEAVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNVVV-SEH 295

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
             K+  ++      +  +V  N  ++ +R        E + + E   NYEI+     +  
Sbjct: 296 SIKEKNQNNAGGNNTNGSVVDN--NMVNRTTQNNNGSETSSRDENTKNYEISKTQQDSIK 353

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
               ++RL+ ++V++                 +   + +  +  +A G + +RGDTI + 
Sbjct: 354 APGSVKRLTASIVLDGN-------------IDEETRSAVRNLAVSAIGYDEKRGDTINVE 400

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
            + F                          +   + L   LL+  +    +++ +  ++ 
Sbjct: 401 GLPFDTAAKDKVKKDLEDMQKAEKTKERIKLFTAIGLGVLLLLGAIIFFIIKKRNEDEEY 460

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
           ++ E G   ++      +       P D  A D                           
Sbjct: 461 EEDEEGLDILIDDNDSETKQVPKFKPIDLEAQDEKTHVENE------------------- 501

Query: 530 RLLHMIEINEERFAKILRKWARSEI 554
            +    +   ++ A+I++ W   + 
Sbjct: 502 -IRKYAKDKPDQVAEIIKSWLAEDE 525


>gi|167725912|ref|ZP_02409148.1| flagellar MS-ring protein [Burkholderia pseudomallei DM98]
 gi|167905072|ref|ZP_02492277.1| flagellar MS-ring protein [Burkholderia pseudomallei NCTC 13177]
 gi|125657201|gb|ABN48689.1| flagella biosynthesis/type III secretory pathway lipoprotein
           [Burkholderia pseudomallei]
          Length = 531

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 113/513 (22%), Positives = 217/513 (42%), Gaps = 22/513 (4%)

Query: 45  SPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPS 104
             +Y  L+   E   ++ +   L    I +RI  +   + V  S V +AR+ LAA+G+ +
Sbjct: 32  QANYKPLFGAREPVQLDDVVSTLDAQRIPYRIHPDTGQVLVARSDVARARMTLAARGV-T 90

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           + +  G E  D+ +  G + F+Q++   R LE E+A++I ++  +  ARVH+ +    SF
Sbjct: 91  AKAAPGLEQIDQDDPLGTSQFVQDVRFRRGLESELAQSIATLEPVERARVHLSIAKSSSF 150

Query: 165 RKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE 221
             +    +A+ ++  + P      +   A+ +LVA +VPNL    V+V+D  G  L+A  
Sbjct: 151 VMMDGDKSAASVVLTLKPGRRLAKEQIAAVINLVAGSVPNLAPAKVSVVDQHGAFLSARV 210

Query: 222 MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD 281
                L  +  I    + ++  N+   LA  LG+ NFR +V A +N D  +     +   
Sbjct: 211 DLDGDLTGTDEIAARFREDVTRNVEDLLAPSLGLGNFRVSVTALVNNDRVEETREQFG-- 268

Query: 282 SKVERSIRLSKDAQRSETSQPESAVTVEQNMPH-VSDRKVPLPRSLENTDKKEEQSNYEI 340
                + ++  +A R+E ++   A+ V  ++ +   D     P++   T +      +  
Sbjct: 269 ----EAPKVMNEATRNEQNRDRVALGVPGSLSNRPVDVPASEPQADGGTQRAATTRQFAY 324

Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400
           +           +LE+LS+AVV+N       +  +  +      L  I++I+ +  GI+ 
Sbjct: 325 DRNITQIKRGRGQLEKLSVAVVLN-----NAVSPAKGKPWSPEQLRRIDEILRSGLGIDK 379

Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460
           +RGD + ++S+DF       +        D L +    +  AL  L G L +    L  L
Sbjct: 380 QRGDQLIVSSLDFA---APAAAEPWWKERDTLEQGGWYLTYALAALFGYLALARPMLRML 436

Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520
           ++               S L  P    A       +D     ++   +        +   
Sbjct: 437 QQWVQHRYGAPAAAASASRLPAPEGGHAQAALPAADDARPPLAAMLPLLDDVELPPADSG 496

Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             V       L  + E   ER A+++++W R++
Sbjct: 497 VEVL---IDHLRSLSEKEPERVAEVVKQWIRND 526


>gi|126442789|ref|YP_001061229.1| flagellar MS-ring protein [Burkholderia pseudomallei 668]
 gi|134280829|ref|ZP_01767539.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 305]
 gi|254182909|ref|ZP_04889502.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1655]
 gi|126222280|gb|ABN85785.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 668]
 gi|134247851|gb|EBA47935.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 305]
 gi|184213443|gb|EDU10486.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1655]
          Length = 532

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 113/513 (22%), Positives = 217/513 (42%), Gaps = 22/513 (4%)

Query: 45  SPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPS 104
             +Y  L+   E   ++ +   L    I +RI  +   + V  S V +AR+ LAA+G+ +
Sbjct: 33  QANYKPLFGAREPVQLDDVVSTLDAQRIPYRIHPDTGQVLVARSDVARARMTLAARGV-T 91

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           + +  G E  D+ +  G + F+Q++   R LE E+A++I ++  +  ARVH+ +    SF
Sbjct: 92  AKAAPGLEQIDQDDPLGTSQFVQDVRFRRGLESELAQSIATLEPVERARVHLSIAKSSSF 151

Query: 165 RKIGARPTASVMIRAINPSVY---KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE 221
             +    +A+ ++  + P      +   A+ +LVA +VPNL    V+V+D  G  L+A  
Sbjct: 152 VMMDGDKSAASVVLTLKPGRRLAKEQIAAVINLVAGSVPNLAPAKVSVVDQHGAFLSARV 211

Query: 222 MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD 281
                L  +  I    + ++  N+   LA  LG+ NFR +V A +N D  +     +   
Sbjct: 212 DLDGDLTGTDEIAARFREDVTRNVEDLLAPSLGLGNFRVSVTALVNNDRVEETREQFG-- 269

Query: 282 SKVERSIRLSKDAQRSETSQPESAVTVEQNMPH-VSDRKVPLPRSLENTDKKEEQSNYEI 340
                + ++  +A R+E ++   A+ V  ++ +   D     P++   T +      +  
Sbjct: 270 ----EAPKVMNEATRNEQNRDRVALGVPGSLSNRPVDVPASEPQADGGTQRAATTRQFAY 325

Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400
           +           +LE+LS+AVV+N       +  +  +      L  I++I+ +  GI+ 
Sbjct: 326 DRNITQIKRGRGQLEKLSVAVVLN-----NAVSPAKGKPWSPEQLRRIDEILRSGLGIDK 380

Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460
           +RGD + ++S+DF       +        D L +    +  AL  L G L +    L  L
Sbjct: 381 QRGDQLIVSSLDFA---APAAAEPWWKERDTLEQGGWYLTYALAALFGYLALARPMLRML 437

Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520
           ++               S L  P    A       +D     ++   +        +   
Sbjct: 438 QQWVQHRYGAPAAAASASRLPAPEGGHAQAALPAADDARPPLAAMLPLLDDVELPPADSG 497

Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             V       L  + E   ER A+++++W R++
Sbjct: 498 VEVL---IDHLRSLSEKEPERVAEVVKQWIRND 527


>gi|313683040|ref|YP_004060778.1| flagellar m-ring protein flif [Sulfuricurvum kujiense DSM 16994]
 gi|313155900|gb|ADR34578.1| flagellar M-ring protein FliF [Sulfuricurvum kujiense DSM 16994]
          Length = 572

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 125/575 (21%), Positives = 240/575 (41%), Gaps = 42/575 (7%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNS------PHYDNLYVKLE 56
           +  QL+ F+   T   +   +I+ + +   I   +    + +         Y  L+ +L 
Sbjct: 6   LFSQLVVFYGKLTQAQK---IIIGTAVAGIIAFLVFLVVYTSEGKKGDNDGYQVLFEQLS 62

Query: 57  VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
             D +++   L +  I +RI    + I VP  +V K RI +A+ G+P    + G+ELFDK
Sbjct: 63  GEDASKVIEQLEKDKIPYRIPRE-NVIEVPKEVVYKERIAIASLGIPKEG-HVGFELFDK 120

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
              FG T+F QE+   RALEGE+AR+I S+S +  + V + +P    F +    P+ASVM
Sbjct: 121 QE-FGATNFDQEVKFRRALEGELARSIDSLSPVEKSSVSLALPKETLFVEEAVPPSASVM 179

Query: 177 IRAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER---NILGKSL 231
           ++         K    I+ LVAAAVP L   +V ++++ G+ L  N+       +     
Sbjct: 180 VQLYPDRKLTPKQIRGIKKLVAAAVPKLTPENVALINAEGETLGDNDDASAMGELSSIQQ 239

Query: 232 SIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290
                 + + E  I   LA F+ G D   + V  E +   Q      +DP++ V RS + 
Sbjct: 240 QYKTKEEKKQEEKIINVLAPFIGGKDRVVAKVTIEYDFSEQSSTSEKFDPEN-VVRSEQS 298

Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
           S++ +  E + P+    V   + ++   +       E  +K    +NYE++     T  +
Sbjct: 299 SEEKR--EGAAPQQVGGVPGAVSNIGPVEGLAGGGGEKFEKTTGTTNYEVSKTVSTTKME 356

Query: 351 NYKLERLSIAVVVNKGRLT--EVLGRSADQ----GKIDSYLAEINKIVSAATGINSRRGD 404
             +++R++ AVVV+       +  G+  D+       ++ +  I+ +V  + G + +RGD
Sbjct: 357 FARIKRMTAAVVVDGKYEPKKDASGQPTDEIEYIALDETQIQAIDALVKQSIGADEQRGD 416

Query: 405 TITITSMDFLENQLFNSGTVQVSFMDIL-SRHFATVINALVFLVGTLLVT-----FLGLH 458
            +T+ + +F  ++        VS   +  S + A       +++  +++       +   
Sbjct: 417 QVTVRNFEFQMSKDGMRPKDAVSKTSLFISTYIAPFTPVFKYILVAIILFIAYKKIIIPF 476

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A R L    + ++ E     I        A    LM           ++           
Sbjct: 477 AERMLEFSREEEEFEKPNLEIADDEDEDLAEKVQLMRKKVENQLGLGENFNEDELKYDVL 536

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
           +          ++  + E + E  A +++     E
Sbjct: 537 LE---------KVREIAEDHPEEIASLIQALIDEE 562


>gi|331269314|ref|YP_004395806.1| flagellar M-ring protein FliF [Clostridium botulinum BKT015925]
 gi|329125864|gb|AEB75809.1| flagellar M-ring protein FliF [Clostridium botulinum BKT015925]
          Length = 524

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 119/565 (21%), Positives = 231/565 (40%), Gaps = 56/565 (9%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            I +Q  +  +    L + + +  + ++L  I   +     +N+  Y  LY  ++ +D  
Sbjct: 3   KIKEQFKKLVEKFKELSKIKKIAFSVLVLGIITGIIYLVISLNTTKYAVLYKDMDPNDAQ 62

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            +   L++  I++++ +N  SI VP     + R+ LA Q    ++ + GYE+ D  ++FG
Sbjct: 63  TVMAKLADKKIEYKVENN--SIRVPEDKAAELRMELAPQ---LTNGSKGYEILDNGDTFG 117

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           +T   +E+   RALEGE+AR I+S+  +  A+V +VM   G+F K     +ASV +    
Sbjct: 118 MTDKERELKYKRALEGELARDIKSLPEVKDAKVLLVMQQEGNFFKQDDPGSASVTLEFET 177

Query: 182 PS--VYKSAEAIRHLVAAAVPNLDMGD---VTVLDSTGKLLT-------ANEMERNILGK 229
                 +  +AI  LV+ +V NL   +   V V++   + L+        N+   ++  K
Sbjct: 178 GKKVTKEQIKAIVALVSGSVKNLPKENIKVVGVVNGKTQDLSEDLFKEDGNKDISSVTEK 237

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
             S  + ++ E    I   L    G    ++AV  +++ D  +    ++DP++ V RS  
Sbjct: 238 QESYKKNLEKEYVKKIMNILTPKYGDG-VKAAVNVDVDFDASEKTSTLWDPNN-VVRSEE 295

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
             KD   S+  +  SA  V+ NM +  + K     S      ++   NYE+         
Sbjct: 296 TEKDTDNSKGGK-TSAGPVDNNMSNTYNAKDQNGTST----HEKTTKNYEVGKVEQKVVG 350

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
              K++++S +V +N            D+        +IN +V+ A   +  RGD +++ 
Sbjct: 351 APGKIKKISASVTIN------------DENLSPVDKDKINSLVAGAISYDESRGDIVSVE 398

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
            M F E     +        +       + I   V      L    G+ AL R     + 
Sbjct: 399 GMKFNEVNEAAAAEEAKKQAEEQKAKQKSFIYKCVGGAVAALAVIAGIVALIRKRRKKNK 458

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
              E   + I             ++ +DN+  +   + I     N  + +   + K +  
Sbjct: 459 VDEEEEIEGID------------MLIDDNVEPNEPLKPINFDEENENTHVEKEIKKYASE 506

Query: 530 RLLHMIEINEERFAKILRKWARSEI 554
           +         E+  +I++ W   + 
Sbjct: 507 K--------PEQVVEIIKAWMAEDE 523


>gi|119775432|ref|YP_928172.1| flagellar MS-ring protein [Shewanella amazonensis SB2B]
 gi|119767932|gb|ABM00503.1| flagellar M-ring protein FliF [Shewanella amazonensis SB2B]
          Length = 565

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 93/527 (17%), Positives = 209/527 (39%), Gaps = 24/527 (4%)

Query: 37  MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIH 96
           +    +   P Y  L  K E  ++ ++   L +  I +++  +   + VP       R+ 
Sbjct: 51  VFVMMWAQEPEYRPL-GKFEAQEMIQVLDVLDKNKIPYQVDFD--VLRVPEDKYQDIRLL 107

Query: 97  LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHI 156
           L+  G+ ++S+ +  +   +   FG++  +++     + E  +ARTI+ +  +  A+V +
Sbjct: 108 LSRNGVDAAST-TNQDFLSQDMGFGVSQRLEQARLKHSQEQNLARTIEELKSVSRAKVIL 166

Query: 157 VMPDMGSFRKIGARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
            +P    F +  ++ +A+V++ +    +  +  +AI  +VA+AV  L+   VTV DS G+
Sbjct: 167 ALPKENVFARNQSKASATVVVTSRRGGLGQEEVDAIVDIVASAVQGLEPTRVTVTDSNGR 226

Query: 216 LLTAN--EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI 273
           LL +   +       + L +V+  + E    ++  L   LG +N+ S V   ++    + 
Sbjct: 227 LLNSGSQDGASARARRELELVKQKEAEYRAKVDAILMPILGPENYTSQVDVTMDFTAVEQ 286

Query: 274 REIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDR------KVPLPRSLE 327
               ++PD    RS    +     E +          N P +         +        
Sbjct: 287 TSKRFNPDLPAVRSEMTLETQTSGEANM--GIPGALSNQPPMESNIPQTLQEAQDKAQAN 344

Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR-LTEVLGRSADQGKIDSYLA 386
               +E   NYE++T    T      + R+S++V V+         G+     + ++ LA
Sbjct: 345 GNSHREATRNYELDTTISHTRQQIGVVRRVSVSVAVDYKTGEANTEGQVNRVARTEAELA 404

Query: 387 EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFL 446
            I +++  A G + +RGD+I + ++ F++  +     + +       +       +L  L
Sbjct: 405 NIRRLLEGAVGFSGQRGDSIEVVTVPFMDQLVEEVPELPMWEQPWFWKAMKLASGSLAIL 464

Query: 447 VGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQ 506
           V  L V    L  L     +D    G +G +        ++     L  +D     + + 
Sbjct: 465 VLILFVVRPLLKKLLLTDKVDMPDDGRLGHELAEIEDQFAADTLGMLNASDAEYSYADDG 524

Query: 507 DIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
            I   + +    +           +  ++    E   ++++ W + +
Sbjct: 525 SILIPNLHKDDDM--------IKAIRALVANEPELSTQVVKNWLQQD 563


>gi|83589623|ref|YP_429632.1| flagellar MS-ring protein [Moorella thermoacetica ATCC 39073]
 gi|83572537|gb|ABC19089.1| flagellar M-ring protein FliF [Moorella thermoacetica ATCC 39073]
          Length = 524

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 112/485 (23%), Positives = 203/485 (41%), Gaps = 32/485 (6%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           I  +   F++  T   R+ ++ +    L+          ++  P Y  L+  ++  D   
Sbjct: 6   IFGKAKSFWQGLTPGRRSALVAVTLAALLA---AGFLVQWLVRPQYAPLFTNMQQQDAAA 62

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           ++  L E  + +R++ +G++I VP   + + R+ LA+ G+ ++    G+ELFD+ N  G+
Sbjct: 63  VTAKLKEMKVPYRLTGDGTTIEVPKDQIYQLRLDLASAGVLNNGQ--GFELFDQ-NKLGM 119

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAI 180
           T F + +   RAL+ E+ RTI ++  +  ARVH+V+P    F +    P+A+V+  ++ +
Sbjct: 120 TDFERNLDYQRALQEELRRTIVTLDEVEDARVHLVIPQPSVFLQQQQPPSAAVVLKLKPL 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL------GKSLSIV 234
                +  + I  L+AA+VP L + ++ V+D  G +L+    +             + I 
Sbjct: 180 ARLKPEQVKGIMELIAASVPGLKLENIRVIDMYGNVLSDGVADSANAPLSQKQQTQMEIK 239

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
           +  + ++E  +   L   LG     + V A+LN D Q+I +  +       RS  +  + 
Sbjct: 240 RQFEKDLEQRLQSMLTQILGPGKAVAMVTADLNFDQQEINQTTWG-KQGALRSEEIKTEQ 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
             S       A T   N P              N +  +   NYE++     T     ++
Sbjct: 299 GTSNGGAGGVAGTAGNNGPGYPAVNPANG----NYNTSDTVHNYELDKTDTHTIVAPGQV 354

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
            RLS AV VN                  +   +I +IVSAA G    RGD IT+TS+ F 
Sbjct: 355 RRLSTAVAVNG-------------PVNAALNNQIQQIVSAAVGYQPARGDQITVTSLAFD 401

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
            +          +      R    ++   V LV   L+  L +  LRR       ++   
Sbjct: 402 NSLQQQMAADMAAQQQRQQRLRQYLLWGGVGLVSLALLVTLIVLILRRRRQAALEEQMAA 461

Query: 475 GGKSI 479
                
Sbjct: 462 AALPA 466


>gi|332799173|ref|YP_004460672.1| flagellar M-ring protein FliF [Tepidanaerobacter sp. Re1]
 gi|332696908|gb|AEE91365.1| flagellar M-ring protein FliF [Tepidanaerobacter sp. Re1]
          Length = 519

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 118/567 (20%), Positives = 231/567 (40%), Gaps = 68/567 (11%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            +  Q+++F++S     + +I++   V++V + + +   + ++ P Y  LY  L++SD  
Sbjct: 6   KLKHQVVEFWQSRDRAQKVKIIVSVIVVIVILGIML---YLISRPKYVPLYTNLDISDAG 62

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L + NI + + D G +I V      K R+ LA +GLP S+S SG++        G
Sbjct: 63  EIVKKLDDLNISYELEDGGKTILVDPEQKYKTRLTLAQEGLPKSNS-SGFDEMFNKTRLG 121

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA--RPTASVMIRA 179
            T + +++   +AL+GE+ + I+ +  + +ARV+IV  +   F +  +   P+A++ +  
Sbjct: 122 TTDWERQVQYNQALQGELTKAIEMMESVESARVYIVQQEKSLFIEPDSNYEPSAAIFLEV 181

Query: 180 INP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-----TANEMERNILGKSLS 232
                   +    I +LV  +V N+   +V V+D  GK L     + +E    ++   L 
Sbjct: 182 KPGAQMTKEEIMGIINLVTYSVKNMKQENVVVVDQYGKTLSNAAISQSEDNEELINNQLV 241

Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK-----VERS 287
           I    Q++++ ++   L    G  N    V A+LN D + ++  ++ P ++     + RS
Sbjct: 242 IQDNFQNQLQASVQSLLEQIFGPGNVAVRVNAKLNFDKKIVQNKLFAPVNEETGEGIVRS 301

Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
           I+  K+              V+ N+P  +  +           + E   N+EIN  +   
Sbjct: 302 IQELKEHFSGTGGAYGGTPGVDSNVPGYNQTQTG----ESEQQRSEVIRNFEINETNENL 357

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
           T     +++L+++VV+N             Q   D+    I ++V  A G +  R D I+
Sbjct: 358 TVAPGAVDKLTVSVVIN-------------QELNDAEKDSITQVVGNAIGYDPER-DQIS 403

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF-LVGTLLVTFLGLHALRRLHNI 466
           I  M+F  +       +   F D ++R            + G +L   L    +R   N 
Sbjct: 404 IEGMEFKND-------MAKFFADEMARQQKEQARMRNIKIAGLILSIILAFIIIRMFLNR 456

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
             A   E      +     ++A  T                        Q          
Sbjct: 457 RKAISEEEKISEEMLAMQQAAATQT------------------------QDESQEIKESS 492

Query: 527 SDLRLLHMIEINEERFAKILRKWARSE 553
              ++  +     E  AK+L+ W + +
Sbjct: 493 FYDKIEKLARRKPEEVAKVLKTWLKED 519


>gi|167041778|gb|ABZ06520.1| putative Secretory protein of YscJ/FliF family protein [uncultured
           marine microorganism HF4000_093M11]
          Length = 461

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 114/453 (25%), Positives = 199/453 (43%), Gaps = 17/453 (3%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           Q   FF + +     RI ILA++ ++ I   ++  F  N   +  L+  +E  D   I  
Sbjct: 14  QFQDFFGALS--LPKRITILAALGIILIG-MVSMIFVANRSSWAPLFSNVEPGDAAAIVE 70

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L E  I + ++  G +I V    V  AR+ LA + +   S     +LF    S G T F
Sbjct: 71  KLQENQIPYMLAPGGRTIMVEPHRVDHARLTLAKEKVLPGSGVGFLDLF-ATPSLGETEF 129

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-AINPSV 184
            Q +    A EGE+AR I +I+ + +A+V + +P    F      PTA++ +    + + 
Sbjct: 130 QQGVKFRVAQEGELARLISTINVVKSAKVSLAIPQKTLFSDNQVEPTAAIALNLTSSGAS 189

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK---SLSIVQAIQHEI 241
            K  E I HLVA+AV  L   +V + D TG LL+    + +  GK   + S    ++ E+
Sbjct: 190 RKQIETIVHLVASAVEGLSPRNVKITDQTGTLLSRGISDDSAGGKMNDNYSYKSRLEKEL 249

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           E  + + +   +G D  R  V A L  D + I+E + DPD     S ++  ++     S 
Sbjct: 250 EAKVVRQIEEVVGKDRVRVNVSATLRFDRRTIKEQLIDPDQTSVVSEQIVDESSTGTRSI 309

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
           P     V  N+P  + R+     ++    KK    N+E + + I       ++ RLS++V
Sbjct: 310 PVGPAGVTTNLPEATGREA---ATVSEFSKKNSTRNFESSRREIILESAVGEVVRLSVSV 366

Query: 362 VVNKGRLT--EVLGRS---ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           +++  R    +  G S    +    +     I  +V AA G N  RGD + + +M F E 
Sbjct: 367 LLDNRRSQILDESGNSLGRTNTPWTEGEKETIIGLVKAAMGYNEERGDRVFVGNMPF-EA 425

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGT 449
            +      ++    + ++    V+  +   +  
Sbjct: 426 AVEEDKASEIEATRVRNKFILDVVRYVALGLSA 458


>gi|224825756|ref|ZP_03698860.1| flagellar M-ring protein FliF [Lutiella nitroferrum 2002]
 gi|224601980|gb|EEG08159.1| flagellar M-ring protein FliF [Lutiella nitroferrum 2002]
          Length = 543

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 123/552 (22%), Positives = 222/552 (40%), Gaps = 28/552 (5%)

Query: 17  LGRTRILILASVILVPIMLFMAARFFVNSPH--YDNLYVKLEVSDVNRISVALSEANIDF 74
           +    +  L  ++++ I L +A  F++      Y  ++   E      +   L    I +
Sbjct: 1   MPAAAVRTLLPLLVLAIGLTLAVTFWLWRDDARYKPVFGAQEKVVAADMMAVLDAEKIPY 60

Query: 75  RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134
           R+      + VP + +G+ R+ LAA+G+ +    +G EL DK +  G++ F+Q++   R 
Sbjct: 61  RLHPQTGQVLVPDADLGRVRMALAAKGVVAQ-LPAGLELLDKNDPLGVSQFVQDVRFRRG 119

Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA-RPTASVMIRAINPSVY--KSAEAI 191
           LEGE+ ++I ++  +  ARVH+ +P   SF   G  + +ASV++          +   A+
Sbjct: 120 LEGELTQSILALEPVQGARVHLSLPRSSSFVTAGEDKGSASVVVTLKPGRQLSNEQIAAV 179

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMNINKAL 249
            +LVA +V  L+   VT++D  G LL++     E           +  + E   N+   L
Sbjct: 180 VNLVAGSVSTLNPAKVTLVDQAGNLLSSRIELAEGGQPAAESDAAKRYREEALENVRALL 239

Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309
              +G DNF+ ++ AE++ D  +     Y    K+       +   +S            
Sbjct: 240 TPVIGADNFKVSITAEVDNDRVEETREKYGEAPKITNEASREE---KSNDKLALGIPGSL 296

Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369
            N P  +D   P   S+    K      Y  +   +   H   +L RLS+AVV+N+    
Sbjct: 297 SNRPINTDSSAPAQESVGGNSKNAVTRQYAYDRSIMQIKHARGRLSRLSVAVVLNQA--- 353

Query: 370 EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFM 429
                 A  G     LA ++K++    GI + RGD + +T+M+F           Q    
Sbjct: 354 ---AAPAKGGWQAEQLANVDKVLRNGLGIKAERGDALAVTAMNFPGQVALEPWWQQ---R 407

Query: 430 DILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPP---IS 486
           D L    + +   +  L+G LL+    L  LR+  +        V   +   P P     
Sbjct: 408 DTLLDGASWLAYGVALLLGYLLIARPLLKILRQWASRPQTAGALVPLAAQGQPEPLLLEP 467

Query: 487 SAVTTGLMPNDN-IALDSSNQDIFSHSRNLQSRINSYVSKQS----DLRLLHMIEINEER 541
                G  P    +AL        S    L    +   +  S       L  +     ER
Sbjct: 468 DEQPAGTAPQGRPLALPEGPPTGASPVMPLLENYDLPPAGSSVDVLVDHLKGLAAKEPER 527

Query: 542 FAKILRKWARSE 553
            A+++++W + +
Sbjct: 528 VAEVVKQWVQKD 539


>gi|90406819|ref|ZP_01215011.1| flagellar M-ring protein [Psychromonas sp. CNPT3]
 gi|90312056|gb|EAS40149.1| flagellar M-ring protein [Psychromonas sp. CNPT3]
          Length = 571

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 105/562 (18%), Positives = 237/562 (42%), Gaps = 35/562 (6%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           L  FF +   L R   +I+  +I++ I++ + +  +   P Y  L    +  ++      
Sbjct: 31  LATFFSNVDVL-RQISMIIGLLIVLAIVVIIWS--WGKQPDYRPL-GNYQTDELISTLDF 86

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L +  I +++   G+S+ V +    K ++ +   GL   +++SG ++  +   FG++  +
Sbjct: 87  LDKEKITYQLE--GNSVLVEAEQYQKIKLLMTRAGLTQDTNDSGDDILLQDMGFGVSQRV 144

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSV 184
           +      + E +I+  I S+  I  A+V + +P    F +   + +A+V+I         
Sbjct: 145 ERERLKLSRERQISVAIMSMKNITKAQVLLAIPKQSVFARKERKASATVVITTSKSYTLS 204

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIE 242
            +  ++I  +VA++V  L    VTV D  G+LL +   +   +      ++ +  ++E +
Sbjct: 205 AQEIDSIVDIVASSVQGLSPNSVTVSDQRGRLLHSGSQDGLSSRSSAEFALERGRENEYK 264

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
             I+  L   LG+ N+ S V   ++   ++  + +++P  K  RS  L +   +S  S  
Sbjct: 265 SKIDAILIPILGLSNYTSEVDLAMDFTIKEETQKIFNPSKKSVRSEMLVET--KSTNSIL 322

Query: 303 ESAVTVEQNMPHVSD-------RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
            +      N P  +        +     +S+      EE  NYE++T  +   H    ++
Sbjct: 323 GNIPGALSNQPPAASSIPEELRKDGDKKKSVIGNSHNEETRNYEMDTTVVHIKHKVGTID 382

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           RL+++V ++    T   G      + D+ + ++ +++    G++  RGD + + S+ F  
Sbjct: 383 RLAVSVALDYVPTTNEAGEVTYAPRTDAEVEKLRRLLMGGLGLDIERGDILEMASVRFNR 442

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
             L      +    +    +     + LV L+  LL+    +  L     ++D    ++G
Sbjct: 443 LDLDAVPEEEFWKTEAFQGYIRFGGSMLVILLTLLLIVRPIMKKLLYPETLEDEDDYDLG 502

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDI---FSHSRNLQSRINSYVSKQSDLRLL 532
           G               G + NDN+ L ++++D+   F          N +  +     + 
Sbjct: 503 GAI-------------GDLGNDNLQLLTADEDVSMEFDIGGGHIKLPNLHKDEDLLKAVR 549

Query: 533 HMIEINEERFAKILRKWARSEI 554
            ++       A+++++W  S+ 
Sbjct: 550 ALVANEPGLSAQVIKEWLTSDE 571


>gi|296283238|ref|ZP_06861236.1| flagellar MS-ring protein [Citromicrobium bathyomarinum JL354]
          Length = 514

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 123/514 (23%), Positives = 225/514 (43%), Gaps = 28/514 (5%)

Query: 44  NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP 103
           +S     LY  L+ +    I+  L   N+ F +S +G+++  P + + + R+ +A + L 
Sbjct: 24  SSDKMGYLYTDLDPTAAQAITEKLRAQNVPFSLSGDGTAVMAPENRLPELRMSMAGEQL- 82

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
                 GYE+ D   +FG++S  +++   RA+EGE+ R+I ++  IV ARVH+VMP+   
Sbjct: 83  --GGAIGYEVLDTQQAFGVSSSREKMNETRAIEGELGRSIATLQSIVNARVHLVMPERAL 140

Query: 164 FRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME 223
           F     + +ASV ++        + EAIR+LVAAAVP L    ++++D TG LL      
Sbjct: 141 FAPEARKASASVTVKTRGKLSSGNVEAIRYLVAAAVPELSPESISIVDQTGALLARAGEA 200

Query: 224 RNILGKSLSIVQ-AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS 282
                      Q A +  I   I   +   +GV   R+ V AE++ D  +    V+DPD+
Sbjct: 201 GEAGASQADERQVATEARIRSQIEALIEPIVGVGKVRAEVSAEIDRDQTREESEVFDPDT 260

Query: 283 KVE-RSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT-DKKEEQSNYEI 340
           +V  R I +    Q  E +     VTV   +P   D       + E+  ++  E   ++ 
Sbjct: 261 QVIARQISVESGDQNRENAGATPGVTVGAQLPEGGDVMGGGGDTRESARNETSEDITFQN 320

Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400
           +++   TT    K+ RL++AV+V+ G          +QG     +  + ++V  A G ++
Sbjct: 321 SSRRTLTTRTPGKVSRLTVAVMVDGG----------EQGLPAPQVQRLTRLVENAVGYDA 370

Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460
            RGD++ + SM F +                L + F      L  L+   +V    L  L
Sbjct: 371 ERGDSVIVESMPFAQPDEIADAEGDFWSDLPLGQLFD-----LGKLLVIAVVGLFVLRML 425

Query: 461 RRLHNIDDAKKGEVGGK--SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           R   N+  +  G++     +++   P        L  +   AL     D         ++
Sbjct: 426 RP-KNVPASAAGQLPSPEQNVIDLTPEGRGGEEQLENDGAPALSGPELD----DEIALAQ 480

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
           +   +   +  ++   +  +    A ++R+W  +
Sbjct: 481 VEGKLKASALKKIGDAVAASPAESAAVVRQWLSA 514


>gi|330862343|emb|CBX72503.1| hypothetical protein YEW_GP28340 [Yersinia enterocolitica W22703]
          Length = 519

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 118/542 (21%), Positives = 237/542 (43%), Gaps = 43/542 (7%)

Query: 26  ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISV 85
                + +   +    + +S  Y  L+   E   V ++   L    I +RI+ +   I V
Sbjct: 1   MGAAAILVTGAIIFSLWRSSQGYTALFGSQEHIPVTQVVEVLDGEAIAYRINPDNGQILV 60

Query: 86  PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145
             + +G+A I LAA+G+ +++  +GYEL D+    G + F+Q +   R+LEGE+A++I +
Sbjct: 61  AENQLGRACILLAAKGI-TATLPTGYELMDQETMLGSSQFIQNVRYKRSLEGELAQSIMA 119

Query: 146 ISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNL 202
           ++ +  ARVH+ M +  SF     +  +ASV++R       K     AI  LVA ++P +
Sbjct: 120 LTSVDYARVHLGMSEASSFAISNRSESSASVILRLKYGQTLKADQVGAIVQLVAGSIPGM 179

Query: 203 DMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNF 258
              +V V+D  G+LL+    AN      +     +   +Q   E +I   L++ +G +N+
Sbjct: 180 KAANVRVVDQHGELLSEAYQANGKGMTNVKNGAELAHYLQSTTEKSIANLLSSVVGANNY 239

Query: 259 RSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDR 318
           R +V  +L++   +     Y  + +V      S +  + E    + A+ +  ++ +    
Sbjct: 240 RISVATQLDLSRVEETLERYGAEPRV------SDENIQQENGNEDMAMGIPGSLSNQPAA 293

Query: 319 KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ 378
           +     +     + + Q  Y  +       H  +KLE++++AV++NK          A +
Sbjct: 294 QPKNANAPAAMSRSQAQRKYAYDRDIRHVRHPGFKLEKMTVAVILNKSA-------PALE 346

Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFAT 438
                 L E+ +++  A GI+++RGD++T+  + F    L +   +   + D  +  +  
Sbjct: 347 KWTPEQLNELKRLIEDAAGIDAKRGDSLTLNMLAFTVPTLIDEPVI-AWWQDATTFRWVE 405

Query: 439 VINALVFLVGTLLVTFLGLHALR-RLHNIDD-----AKKGEVGGKSILSPPPISSAVTTG 492
           +    +  +        G+  L  RL   DD     A    + G ++ +    SSA T  
Sbjct: 406 IAGIGLLSLLF---LLFGVRPLMARLSRRDDKHSALAMAENIDGLNVTNTTSESSATTEP 462

Query: 493 LMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
           ++P  +               NL  + +    K S   L  + +   ER A+++++W  +
Sbjct: 463 MLPGSSF----------KEDDNLPPQGSGLEIKISH--LQQLAQSETERVAEVIKQWINN 510

Query: 553 EI 554
             
Sbjct: 511 NE 512


>gi|256376473|ref|YP_003100133.1| flagellar M-ring protein FliF [Actinosynnema mirum DSM 43827]
 gi|255920776|gb|ACU36287.1| flagellar M-ring protein FliF [Actinosynnema mirum DSM 43827]
          Length = 559

 Score =  320 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 111/557 (19%), Positives = 224/557 (40%), Gaps = 30/557 (5%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
                +    + L+  + +L  +        + + P Y  LY  L   D + I   L+ A
Sbjct: 14  LSGFKAFTAGQKLVAGATVLAVVGAIAFYFLWASKPTYAPLYTSLASKDASAIVDQLTAA 73

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
            + + ++D G +I VP   V   R+ ++A  LPS S ++GY L D+      + FMQ++ 
Sbjct: 74  GVTYELTDGGQTIMVPQDQVYPMRLKMSAANLPSQS-DTGYALLDQ-QGVTTSEFMQQVG 131

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RA+EGE+  TI++I G+ +A VH+ +P    F    ++PTA+V++             
Sbjct: 132 YQRAMEGELGSTIKAIDGVTSASVHLAIPQKDVFSDSDSKPTAAVLVGTGAGKSLSQAQV 191

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAIQHEIEMNI 245
           + I HLV+++V  +    VTV  + GK+L+   A+    +  G      +A +  +  ++
Sbjct: 192 QTITHLVSSSVEGMSADGVTVAGTDGKVLSTGGADGASASANGDRDDQTKAFEQRLSTSL 251

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-DSKVERSIRLSKDAQRSETSQPE- 303
            + L+  +G D+    V A+L+ D  + +   Y   D     S   + ++   +  Q   
Sbjct: 252 QQMLSQVVGQDHAVVQVTADLDYDQTETKSQTYTSGDGTAPLSESSTTESYTGDGGQNAA 311

Query: 304 ----SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
                +     N    +             ++++   N  +N+          K+ +L +
Sbjct: 312 GGVLGSTNGTLNGLEGNTTNGTGGSGNGTYNQEKSTRNNAVNSVIETRQSAPGKVRKLGV 371

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN-QL 418
           AV++++     V             +AE+ +I S+A  +++ RGDT+ ++SM F  +   
Sbjct: 372 AVLLDQKTAGAVD------------MAEVERIASSAVALDTARGDTLAVSSMPFDTSAAQ 419

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL-GLHALRRLHNIDDAKKGEVGGK 477
                V              ++   V  +G L +  +  +   RR      A + E+   
Sbjct: 420 QGEAAVAAQQAQAQQDELMGMVKTGVAGLGVLALLIMTMIATRRRRKRAAAAAEAELAKL 479

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH---M 534
             L      +  +             +  D    S   ++ ++  V  + + R+     +
Sbjct: 480 DELKAQLERTRTSEIEAAIAEKQALVAGNDFPQLSGPKRAEVDPLVVAEQEKRMGEIQSL 539

Query: 535 IEINEERFAKILRKWAR 551
           ++   E  A++LR W  
Sbjct: 540 VDEQPEEVARLLRGWLA 556


>gi|118444659|ref|YP_877975.1| flagellar MS-ring protein [Clostridium novyi NT]
 gi|118135115|gb|ABK62159.1| flagellar M-ring protein FliF [Clostridium novyi NT]
          Length = 523

 Score =  320 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 124/566 (21%), Positives = 234/566 (41%), Gaps = 59/566 (10%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            I ++          L + + +  + + +  I   +    F+N+  Y  LY  ++ +D  
Sbjct: 3   KIKEKFKNLIDKFKELSKGKKIAFSILGVGIISGLIYLIVFLNTTKYAVLYKDMDPNDAQ 62

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            +   L+E  +++++ +  SSI VP   V + R+ LA Q    +S + GYE+ +  +SFG
Sbjct: 63  TVMTKLNEKKVEYKVEN--SSIKVPEEKVSELRLELAPQ---LTSGSKGYEILENADSFG 117

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           +T   +E+    ALEGE+A+ I+S+  +  A+V +VMP  G+F K      ASV I    
Sbjct: 118 MTDKERELNYKIALEGELAKNIKSLPEVKDAKVLLVMPQEGNFFKQAENAQASVRIEFNE 177

Query: 182 PS--VYKSAEAIRHLVAAAVPNLDMGDVTVL--------DSTGKLLTANEMER--NILGK 229
                 +  +AI  LV  +V NL   +V ++        D T  L +  + +   ++  K
Sbjct: 178 GKSISKEQIKAIVSLVTGSVKNLKKENVKIIGVLNGKTKDLTDDLFSEEDGKDLTSVTDK 237

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
                + ++ E    I   L    G    ++AV  +L+ D  +    V+DP++ V RS  
Sbjct: 238 QNKYKKNLEKEYVKKIMNILTPKYGEG-VKAAVNVDLDFDASEKTSTVWDPNN-VVRSEE 295

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
           + KD ++S+  +  SA  V+ NM +  + +     S      ++   NYE+      T  
Sbjct: 296 IEKDTEKSKDGKV-SAGPVDNNMSNTYNNQDGNSSST----HEKTTRNYEVGKIEQKTVG 350

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
              K++++S +V +N   L  V               +IN +V+ A   +  RGD IT+ 
Sbjct: 351 APGKVKKISASVTINDENLNPVDK------------DKINSLVAGAISYDENRGDIITVE 398

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL-RRLHNIDD 468
            + F E     +        +       T I   +      L+   G+ AL R+  N  +
Sbjct: 399 GLKFNEINDAKAEEEAKKQAEEQKAKQRTFIYKCIGGAVIALLLIGGIIALIRKRKNKKE 458

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
             + ++ G  +L               +D +      + I     N  + I   + K + 
Sbjct: 459 EAEEQIEGIDMLI--------------DDEVEPKEPLKPINFDEENESTHIEKEIKKYAT 504

Query: 529 LRLLHMIEINEERFAKILRKWARSEI 554
            +         ++ A+I++ W   + 
Sbjct: 505 EK--------PDQVAEIIKAWMAEDE 522


>gi|225181611|ref|ZP_03735052.1| flagellar M-ring protein FliF [Dethiobacter alkaliphilus AHT 1]
 gi|225167719|gb|EEG76529.1| flagellar M-ring protein FliF [Dethiobacter alkaliphilus AHT 1]
          Length = 519

 Score =  320 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 123/559 (22%), Positives = 223/559 (39%), Gaps = 61/559 (10%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           ++    +    L + + +    + +  I+        +  P    L+  LE  D  RI+ 
Sbjct: 11  RVQDLPEKWQQLSQRKKIAAIVMAVAIIVTLFFLGQAIARPRMALLFTGLEPVDAGRIAA 70

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L E N+ + + D G +I V   MV   RI LA+    +    SG+ELFD+ N  G T F
Sbjct: 71  RLQEMNVQYSLDDEGRTILVRQDMVDDVRIQLASDESLNIGGGSGFELFDQTN-LGATDF 129

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
            + +  +RAL+ E+ RTI  +  +  ARVH+ +P+   F +  A P+AS+++     S  
Sbjct: 130 NRRMDYLRALQEELRRTIVRLDEVEQARVHLALPEPSVFIQDSAEPSASIVLALSPVSRL 189

Query: 186 KS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK-------SLSIVQA 236
            S     I HLVA +V N+   +VTV+D+TG +L+      +   +        L I ++
Sbjct: 190 DSERVRGIVHLVAGSVENMRPENVTVIDTTGNILSDQLDNLDPTKQLAEATMAQLDIKRS 249

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
            + E+E  +   L   LG     + + A+L+ D+ +   I +D +  V RS  ++++   
Sbjct: 250 FEKELERRVQVMLERILGPGQAIAMITADLDFDSHESTVITFDSEG-VPRSQTITEEYFE 308

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
                P  A   + N+P                ++ +E +NYEIN  +        KL +
Sbjct: 309 GAGVVPGEA-GADSNIPGY---PWVGGTGDSTYERYDETTNYEINETTERQIRAPGKLVQ 364

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           L+ +VVVN                  + + +I++ V AA G    RGD+I++  M F  +
Sbjct: 365 LNASVVVNDNG----------GQLSQAQVRQISEAVEAALGYQVGRGDSISVQGMSFDTS 414

Query: 417 QLFNS--GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
              ++     + +  +++ R+      AL  ++   ++       LR      + +    
Sbjct: 415 HQEDAMLAMEEAARREMIERYVTIGAIALAAIIIFFVI-------LRAFRAWRERQLEAE 467

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
                 +P                                 Q R+          R+  +
Sbjct: 468 LAALASAPKIQEEPAEE-------------------MEETPQQRL--------HKRVRDL 500

Query: 535 IEINEERFAKILRKWARSE 553
            E   E  A ++R W   E
Sbjct: 501 AEREPESVAHLIRAWLAEE 519


>gi|119715006|ref|YP_921971.1| flagellar M-ring protein FliF [Nocardioides sp. JS614]
 gi|119535667|gb|ABL80284.1| flagellar M-ring protein FliF [Nocardioides sp. JS614]
          Length = 531

 Score =  320 bits (820), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 116/551 (21%), Positives = 210/551 (38%), Gaps = 35/551 (6%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           L     + TS    + ++        ++       +V++P Y  LY  L  SD + I   
Sbjct: 9   LANLRTTFTSFTLGQQVVSVIGTAAILLAAFMVFRWVSTPDYAPLYSNLAASDASAIVDE 68

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L      +++++ GS++ VP   V   RI L+ QGLP  SS  GY L D       + F 
Sbjct: 69  LDSQGTPYKLANGGSTVMVPRDSVYATRISLSGQGLPEQSSGQGYSLLD-NQDISTSEFQ 127

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV-- 184
           ++    RA+EGE+A TI+++ G+  A VH+ +P    F      PTASV+I     +   
Sbjct: 128 EQTDFKRAMEGELASTIEAVDGVTTAVVHLALPPAKVFSDQQDPPTASVLIDTAAGTTFN 187

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN 244
            +  +AI HLVA+++  LD  +VTV DS+GK+L++++            V + Q +    
Sbjct: 188 AEQVQAIVHLVASSIDGLDPDNVTVADSSGKVLSSSDAGALGASTRDQQVTSFQQQTSQR 247

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           I   L   LG  N    V A+L+ D        Y   +KV      +   +    +   S
Sbjct: 248 IQSMLDRVLGPGNSTVQVTADLDFDKSVSESTTYGKSNKVPALSSSTSTEKYDGPAGGSS 307

Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
           +  V      +            +  K+   S+  +             +  L + VV++
Sbjct: 308 SSGVVGPDGQMDSFGATGAGGKSSYVKESTTSDNAVEKTIEHRETAPGSINTLHVGVVLD 367

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424
                 V               ++  +++A  GIN  RGDT+ +T+M F       +   
Sbjct: 368 TTAAQTVNP------------TDVQDLIAATVGINPDRGDTVQVTTMPFDRTADKAAAAE 415

Query: 425 QVSFMDIL--SRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482
             +        R +    NA + +    ++    L + ++    +               
Sbjct: 416 LAAATKAAKTQRMWDLARNAGIAVAILAVLLIAWLRSRKKSKRREK-------------- 461

Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR-LLHMIEINEER 541
              ++      + ND     ++      +S  L++  ++  +     R L  + +   E 
Sbjct: 462 ---TTTYLVEQLRNDAAERQAAAAVAIQNSPALEALESADRAGDEMRRELADLADGQPED 518

Query: 542 FAKILRKWARS 552
            A +LR W   
Sbjct: 519 VAALLRGWLVE 529


>gi|320107022|ref|YP_004182612.1| flagellar M-ring protein FliF [Terriglobus saanensis SP1PR4]
 gi|319925543|gb|ADV82618.1| flagellar M-ring protein FliF [Terriglobus saanensis SP1PR4]
          Length = 559

 Score =  320 bits (819), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 128/539 (23%), Positives = 221/539 (41%), Gaps = 60/539 (11%)

Query: 37  MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIH 96
           +A  ++     +  L+  LE  D+ ++   L  A I ++ + +GS I V +  + KAR+ 
Sbjct: 53  VALVWWTGRTDWRPLFKGLEGRDLQQVEQQLGSAGIAYQPTPDGSGIEVAAEQMDKARMV 112

Query: 97  LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHI 156
           +AA+G+P  S   G+ELFDK N  G + F +++   RALEGE+  TI+++  + +ARVH+
Sbjct: 113 VAAKGMP-GSGRMGFELFDKPNWVG-SEFDEKVNYQRALEGELEHTIETLGAVRSARVHL 170

Query: 157 VMPDMGSFRKIGARPTASVMIRAINPS-VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
            +     F       TASV+++  N S     A +IR LVA AV NL    V ++D+ G 
Sbjct: 171 TLSRQSLFAAEEHPATASVVLKMRNASLARDQAASIRALVAGAVENLHPEQVALVDADGH 230

Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
                  +R         VQ  +  +E  +   L    G  N R+ V    + + ++  +
Sbjct: 231 FDLNGPTQRGE-------VQEQEQALERKLVAMLEPLAGTGNVRATVNLSFDSEAEERTD 283

Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDK---- 331
            VYDP      S++ S+ +      Q  +      NMP  +    PL  + E  D     
Sbjct: 284 EVYDPQQSAPVSMQRSEQSSTQANRQ-GAVAGAAANMPGPAPAVPPLLATPEKKDANGLP 342

Query: 332 ------------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA--- 376
                       +EE S+Y +    + T     +++R+  AVVVN   +TE  G+     
Sbjct: 343 VYPQAGGPSQAVREESSSYAVTRHLVHTQRGPGRVQRIVAAVVVNDRAVTEKAGKDGATL 402

Query: 377 DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG---TVQVSFMDILS 433
            + +    +  + ++  AA G + +R D + I ++ F EN           Q        
Sbjct: 403 WKQRTPEEMRRLEQLAQAAVGFDPKRADQVVIENIAFSENAADARPNWFERQAEHGSNFL 462

Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493
           R    +I  L  +V   LV F  L  L              G +   +  P   A  T +
Sbjct: 463 RMQPVLIRTLGVVVCGALVCFFVLRPL--------------GEQVSKALQPALPAPRTAI 508

Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
                        D+         +I+    + +   + + I  + ++ A++L  W  S
Sbjct: 509 -------------DLNIPVPPEGGQISPSQVQSTFEAVKNQIRSDPQQSARLLESWIGS 554


>gi|118475241|ref|YP_891471.1| flagellar MS-ring protein [Campylobacter fetus subsp. fetus 82-40]
 gi|118414467|gb|ABK82887.1| flagellar M-ring protein FliF [Campylobacter fetus subsp. fetus
           82-40]
          Length = 568

 Score =  320 bits (819), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 117/561 (20%), Positives = 230/561 (40%), Gaps = 28/561 (4%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILAS---VILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           +  Q+ Q +++ T   +             LV + L+ ++        Y  L+  L  +D
Sbjct: 6   LFHQVGQLYQNLTLKQKIVAASSVVIVVGFLVFLSLYKSSSSGSEYDGYSILFRNLNPAD 65

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
             +I   L +  + +++++ G +I VP+  V K RI +A+ G+     N G+E+FDK   
Sbjct: 66  SAQIIAQLEKDGVTYKLANEG-TILVPTKSVYKERIAVASLGIMKDGKN-GFEIFDK-QD 122

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           FG T   Q +   RA++GE+++TI+ +  I  A V+I  P    F +    PTASV+++ 
Sbjct: 123 FGATDNEQRVKFQRAIQGELSKTIEGLEPIEKATVYIAFPKDSVFTERQVPPTASVVVKI 182

Query: 180 INP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQ 235
            +      K  + I+ +VA +V NL   DV ++   G  +  +E  +E  ++   +   +
Sbjct: 183 KDGEKLNRKQIDGIKRIVAGSVTNLKAEDVKIVTQDGVAVGDDEIALESELVASQIKYKK 242

Query: 236 AIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
             ++  E  I   +  F  G D   + V  E +   +  +  +YDP+S +     + +  
Sbjct: 243 EFENTYEQKIIDMIGKFTGGRDKVTAKVSIEFDFSVKDSQSEIYDPNSVIRSEQNIEEKR 302

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
           +  +  +         N+  V       P   E   K    +NYEI+ K I        +
Sbjct: 303 EGKQPKEVGGVPGAVSNIGPVEGLDQNKPD--ELYTKNVANTNYEISKKIIKVKDQYATI 360

Query: 355 ERLSIAVVVNKGRLTEVL------GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
           +R++ AVVV+     E           A     +  + +I  +V    G NS RGD +T+
Sbjct: 361 KRVTAAVVVDGKYEREKKEDGSLSDTIAYVPLSEDEINKIKSLVEQTIGYNSTRGDEVTV 420

Query: 409 TSMDFLENQLFNSGTVQVS-FMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNI 466
           ++ +F +    N+ T ++  F D   +    +I  L+ L+   +     +   L+++   
Sbjct: 421 SNFEFKKAGNLNANTTKIGIFYDSYLKPLTPIIKYLIVLLILFVFYKKVITPFLQKMVEN 480

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMP----NDNIALDSSNQDIFSHSRNLQSRINSY 522
              +  E   +           +           D + +     +       L  ++   
Sbjct: 481 AKDEDFEPQKEESNIEEEAEDTLEKFKAARKRVEDELGIGEDFNEDELKYEVLLEKMKLI 540

Query: 523 VSKQSDL---RLLHMIEINEE 540
           VS++S+     L  MI+ + +
Sbjct: 541 VSERSEEISTLLQGMIKNDSD 561


>gi|91795006|ref|YP_564657.1| flagellar MS-ring protein [Shewanella denitrificans OS217]
 gi|91717008|gb|ABE56934.1| flagellar M-ring protein FliF [Shewanella denitrificans OS217]
          Length = 565

 Score =  320 bits (819), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 117/571 (20%), Positives = 230/571 (40%), Gaps = 41/571 (7%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           ++     Q ++  T   +   +++ +++   +   +    +  S  Y  LY   E  + +
Sbjct: 20  SLFSSAAQGWRRFTQGDKQ--VMVLALLATVVASVIVIMLWTASQGYRPLYGSQENVETS 77

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           ++   L    I +RI  +   + V    +GKAR+ LAA+G+ +   +   EL    +S G
Sbjct: 78  QVIEVLEAEGIYYRIESHTGLVLVADDQLGKARMLLAARGVKAKVPSGMDEL--DSSSLG 135

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAI 180
            + FM++      LEGE+AR+I S+  + +ARVH+ +P    F +     PTASVM++  
Sbjct: 136 TSQFMEQAKYRHGLEGELARSIMSLKNVRSARVHLAIPKRSLFIRQTPELPTASVMLQLS 195

Query: 181 NP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER----NILGKSLSIV 234
                     EA+ +LVA +V  ++   V ++D  G+ L+AN  E         + ++  
Sbjct: 196 PGAELSQSQVEAVVNLVAGSVTGMETSGVKIVDQEGRFLSANINEDQDMTQARDRQITYT 255

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
           + ++  +  N +  L A LG +NF+  + A++N +  +  +   DP S + +    S D 
Sbjct: 256 RELEQNLMHNASSMLEAILGPNNFQVKIAAKVNFNQIEETKEALDPQSVLVQERTSSDDK 315

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
             +     +       N P  +        +     ++E    +++        +   +L
Sbjct: 316 NAA---LAQGIPGALSNQPPQAAEGDKKDNTR--NLRQEANRQFDVGRSVRHIRYQQMQL 370

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           E +S++V+VN    T   G + D    D+ L ++  +V  A G +S RGD+ +I +  F 
Sbjct: 371 ENISVSVLVNN---TVATGLTTD----DAELTKLGSMVKDAIGFSSERGDSFSINAFAFS 423

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN--------- 465
              +     +                  L +L+G LL   L L  LR L +         
Sbjct: 424 VPTVAEFEPLPWW-------QVEDYQAYLRYLIGGLLGLGLILFVLRPLVSHLTFTAKHV 476

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
            ++ ++ E    +  +    + + TT             +   +    NL    +    +
Sbjct: 477 DNETREPETINLAKSAESTTAESNTTTRAAISQGHSAEKSTAEWLGGLNLPEPGSPLTVQ 536

Query: 526 QSDLRLLHMIEINEERFAKILRKWARSEIED 556
                L  +      R A++L  W   +  D
Sbjct: 537 MEH--LGMLANQEPARVAEVLAHWIGDKDAD 565


>gi|34498454|ref|NP_902669.1| flagellar MS-ring protein [Chromobacterium violaceum ATCC 12472]
 gi|34104309|gb|AAQ60668.1| flagellar M-ring protein [Chromobacterium violaceum ATCC 12472]
          Length = 542

 Score =  319 bits (818), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 115/540 (21%), Positives = 210/540 (38%), Gaps = 21/540 (3%)

Query: 20  TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN 79
            R L+   ++ + + +      + +   Y  ++   E      +  AL    I +R+   
Sbjct: 12  WRYLLPIVLLAIGLSVVATLWLWRDDASYKPVFGAQEKVSGADMMAALDAEKIPYRVHPQ 71

Query: 80  GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEI 139
              + VP   + +AR+ LAA+G+ +    +G EL DK +  G++ F+Q++   R LEGE+
Sbjct: 72  TGQVLVPDGDLARARMQLAAKGVVAQ-LPAGLELLDKNDPLGVSQFVQDVRFRRGLEGEL 130

Query: 140 ARTIQSISGIVAARVHIVMPDMGSFRKI-GARPTASVMIRAINPSVY--KSAEAIRHLVA 196
            ++IQ++  + +ARVH+ +P   SF    G + +ASV++          +   A+  LVA
Sbjct: 131 VQSIQALDPVRSARVHLSLPRSTSFVTAGGEKGSASVVVTLKPGQQLSSEQIAAVVKLVA 190

Query: 197 AAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLG 254
            +V +LD   VT++D  G LL+A  +  +  I G +    +  + E   N    L   LG
Sbjct: 191 GSVASLDPSQVTLVDQAGNLLSAHVDLSDGGIAGNNSEAARRFRDEALQNARDLLTPALG 250

Query: 255 VDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPH 314
             NF+ +V A+++ D  +     Y    KV       +    S             N P 
Sbjct: 251 AGNFKVSVTADVDNDRVEETREKYGEAPKVTNEASREE---TSTERMALGVPGSLSNRPV 307

Query: 315 VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR 374
            +D   P         K      Y  +            L RLS+AV +N+       G 
Sbjct: 308 NTDSSSPA-ADKAGNSKNAVTRQYAYDRNITNIKRARGTLRRLSVAVALNQAAAPGGKG- 365

Query: 375 SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSR 434
                   + LA I+K++    GIN+ RGD + ++++ F +         Q       +R
Sbjct: 366 -----WQPAELANIDKLLRNGLGINAERGDVLAVSTLRFAQPTPAEPFWEQPETWFEGAR 420

Query: 435 HFATVINALVFLVGTLLVTFLGLHAL--RRLHNIDDAKKGEVGGKSILSPPPISSAVTTG 492
             A  +  L+  +            L  R+L++    +        +L   P+  A +  
Sbjct: 421 WAAYAVALLLAYLLLARPLLKLARQLAERKLNDYTPDELDVTPDDPLLDNRPLREAASQR 480

Query: 493 LMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
                    DS    +     N                L  +     ER A+++++W ++
Sbjct: 481 QAALSAAPGDSPVVPLL---ENYDLPPAGSPVDVMVEHLKGLAAKEPERVAEVVKQWVQN 537


>gi|149908770|ref|ZP_01897431.1| flagellar M-ring protein [Moritella sp. PE36]
 gi|149808312|gb|EDM68251.1| flagellar M-ring protein [Moritella sp. PE36]
          Length = 580

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 123/561 (21%), Positives = 240/561 (42%), Gaps = 47/561 (8%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
            L R R L    ++   I   + A  +     Y  LY K E+ D   I   L +   DF+
Sbjct: 35  KLYRFRSLFFIGLLSSLIAAAIVASLWTAE-QYVPLYGKQEMYDKANILELLEQQKADFQ 93

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135
           +      I V  S + + R+ LAA G+  +       L  K    G + FM+  +   AL
Sbjct: 94  LDTESGQILVAKSQLAQLRMALAALGVKKNIPMGMGGLEGK-MGLGTSQFMESKSYRFAL 152

Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRAINPSVYKSAE--AIR 192
           EGE+A +I +I  +  ARVH+ +P+   F  +   + +ASVM+           +  AI 
Sbjct: 153 EGELALSIITIDAVRNARVHLALPERTLFIGRHEEQASASVMLDLQPGRELSQGQVSAII 212

Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN----ILGKSLSIVQAIQHEIEMNINKA 248
           +LVA++V NL   +++V+D  G+LLT +  + +    +  + ++    ++  +   I++ 
Sbjct: 213 NLVASSVTNLKPDNISVVDQAGRLLTLSGSQSSNRGQVATQQVTFKNDLEARLTRRISEL 272

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308
           L   +G +NFR  + A+L+ +  +       P++       L+K+  R + S   +AV +
Sbjct: 273 LYPLVGAENFRIQLTADLDFNEVEETVETVSPETV------LTKENIREQVSGDVNAVGI 326

Query: 309 E---QNMPHVSDRKVPLPRSLEN-------TDKKEEQSNYEINTKSIATTHDNYKLERLS 358
                N+P V        ++  +       T + +    Y +    +   ++  ++  LS
Sbjct: 327 PGSLSNLPPVKKVTKKGKKTASSEAESSMITKRNDYSKEYVVGRSVMHKKYEFGRINNLS 386

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           ++V++N    T        +G  D  LA+I+  +  A GI + RGD + I+  DF+    
Sbjct: 387 VSVILNNKIAT------GKEGWSDEELAKISITIKNAIGIVASRGDQLNISGYDFIAVPE 440

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
                +    MD++  +       L ++V T+L   L +  +R L     ++  +    +
Sbjct: 441 ITLEALPWWQMDVIQAY-------LRYIVITILGLALIMFVIRPLTKHFVSQLRQADNAA 493

Query: 479 ILSPPPISSAVTTGLMPN---DNIALDSSNQDIFS----HSRNLQSRINSYVSKQSDLRL 531
           + S    S A T  L  +   D +   S   ++          L +  + +  + + L++
Sbjct: 494 LASTEQTSEAKTNSLNTDIKPDELTKASKPVNMTELTSVEMPALPAPGSEFSVQLNHLQI 553

Query: 532 LHMIEINEERFAKILRKWARS 552
             + +    R A++L+ W +S
Sbjct: 554 --LADKEAVRVAEVLKGWVKS 572


>gi|330505661|ref|YP_004382530.1| flagellar MS-ring protein [Pseudomonas mendocina NK-01]
 gi|328919947|gb|AEB60778.1| flagellar MS-ring protein [Pseudomonas mendocina NK-01]
          Length = 560

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 121/564 (21%), Positives = 229/564 (40%), Gaps = 37/564 (6%)

Query: 12  KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71
           ++G  L     LI  +VI   + + +    + +   +  LY   E      +   L    
Sbjct: 11  ETGLKLDPRMTLIGLAVIAALLAVGVVFYLWRDQGSFRPLYGAGEAYPAAEVMQVLDGDA 70

Query: 72  IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131
           I++R+      + V    +G+AR+ LAA+G+      +GYELFDK    G + F+Q++  
Sbjct: 71  INYRLHPQSGQVLVREDQLGRARMLLAAKGV-QVKVPAGYELFDKDEPLGTSQFVQDVRL 129

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARP-TASVMIRAINP--SVYKSA 188
            R+LEGE+ART+ ++ G+  ARVH+ + +  SF      P  ASVM++         +  
Sbjct: 130 KRSLEGELARTVMALKGVEGARVHLALQESSSFVVGKREPGKASVMLQLAPGYKLTPEQV 189

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKA 248
            AI +LVA +VP L+ G+V V+D  G LL+          ++  +V   Q +   N    
Sbjct: 190 SAIVNLVAGSVPQLEAGNVQVVDQYGALLSRGIDTLGGPVQNWQVVDDYQSKAVANAEAV 249

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308
           LA  LG  N+R +V A+++   ++     Y        S RL  +  R E+   + A+ V
Sbjct: 250 LAPVLGGGNYRISVSADIDFSQKEETFQAYG------ESPRLRNEVVRDESVLDQLALGV 303

Query: 309 EQNM-------------PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
             ++                +  +         + +KE     + +       H  + L 
Sbjct: 304 PGSLANRPPQPAPPANQQAQAGAQGENANQAATSLRKESNRQLDYDQSITHVKHAPFSLR 363

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           + SIAVV+N          + + G       E+  +V +A G N  RGD +T++   F +
Sbjct: 364 QQSIAVVLN-------AAVAPEGGWTPEAREELAAMVKSAVGFNQARGDLLTLSVFPFTD 416

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR---LHNIDDAKKG 472
             +  +G   + + +    H   +    VF + +LL+  + +    R     N       
Sbjct: 417 AGIGGAGEDLLPWWENSKVH--DLAKLGVFALISLLLLLMVVRPAVRSLSQRNQTGLPAM 474

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
             G   +      ++      + +D        +        L +  +    +   L++ 
Sbjct: 475 AEGDDQLALHAERAAERLLARVGDDAPGATVLGELSPLSEIRLPAPGSGLELQIEHLQM- 533

Query: 533 HMIEINEERFAKILRKWARSEIED 556
            + + + ER ++++++W      D
Sbjct: 534 -LAKNDPERVSEVIKQWIGRNERD 556


>gi|262166236|ref|ZP_06033973.1| flagellar M-ring protein FliF [Vibrio mimicus VM223]
 gi|262025952|gb|EEY44620.1| flagellar M-ring protein FliF [Vibrio mimicus VM223]
          Length = 510

 Score =  317 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 108/529 (20%), Positives = 221/529 (41%), Gaps = 34/529 (6%)

Query: 38  AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97
              F+V  P    L    E  ++  +   L +    +++  +G++I VP S     ++ +
Sbjct: 1   MLFFWVREPDMRPLGA-YETEELIPVLDYLDQQKQQYKL--DGNTILVPVSDYNSLKLSM 57

Query: 98  AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
              GL +    +G E+  +   FG++  +++     + E ++A+ I+ +  I  ARV + 
Sbjct: 58  VRAGL-NQERQAGDEILMQDMGFGVSQRLEQERLKLSRERQLAKAIEEMRQINKARVLLA 116

Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
           +P    F +     +ASV +     +  K    +A+  +VA+AVP +    VTV D  G+
Sbjct: 117 LPKQSVFVRQNQEASASVFLSLRTGANLKQEEIDAVVDMVASAVPGMKPSRVTVTDQHGR 176

Query: 216 LLTANEMERNILGKSLSIVQAIQHE--IEMNINKALAAFLGVDNFRSAVVAELNMDTQQI 273
           LL++   +     +        Q E  +   I+  L   LG+ N+ + V  EL+    + 
Sbjct: 177 LLSSGSQDPVSAARRKEQELEKQQEEALRGKIDSVLIPILGLGNYTAQVDIELDFSAVEQ 236

Query: 274 REIVYDPDSKVERSIRLSKDAQRSE---------TSQPESAVTVEQNMPHVSDRKVPLPR 324
              V+DP++   RS    +D              ++QP +  ++ Q++  + D  V    
Sbjct: 237 TRKVFDPNTPATRSEYTLEDYNNGNVVAGVPGALSNQPPADASIPQDVAQMKDGSVMGQG 296

Query: 325 SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV-NKGRLTEVLGRSADQGKIDS 383
           S+     KE   N+E++T        +  + R ++AV V ++  +    G        ++
Sbjct: 297 SV----HKEATRNFELDTTISHERKQSGVVNRQTVAVAVKSRSNVNSETGEVTYTPLSEA 352

Query: 384 YLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINAL 443
            L  I +I+    G +  RGD + + SM F E ++     V +      +     + +AL
Sbjct: 353 DLNSIRQILIGTVGYSENRGDLLNVLSMPFAEPEVEQIADVPIWEHPNFNDWIRWLASAL 412

Query: 444 VFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDS 503
           V ++  L++      A+++L N       ++ G       PI +   T L+ +D   +DS
Sbjct: 413 VIIIVVLVLV---RPAMKKLINPAADSDDQMYGP---DGMPIGADGETSLIGSD---IDS 463

Query: 504 SNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
                F    +L    N +  +     +  ++    E  A++++ W ++
Sbjct: 464 GELFEFGSGIDLP---NLHKDEDVLKAVRALVANEPELAAQVVKNWMQN 509


>gi|322432996|ref|YP_004210245.1| flagellar M-ring protein FliF [Acidobacterium sp. MP5ACTX9]
 gi|321165223|gb|ADW70927.1| flagellar M-ring protein FliF [Acidobacterium sp. MP5ACTX9]
          Length = 525

 Score =  317 bits (812), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 125/564 (22%), Positives = 234/564 (41%), Gaps = 48/564 (8%)

Query: 1   MAILDQL----LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLE 56
           MA  DQ+     QF+ + T   R   L L       + L       + +P Y  L   LE
Sbjct: 1   MAGFDQIFVQAKQFWATRTQSQR---LFLGVGAAATVGLLALFANLMVTPDYKPLISGLE 57

Query: 57  VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
            +D   IS  L+   I F++S +G SISVP+  V  AR+ +A+    + S   G+E+FDK
Sbjct: 58  SADAQAISADLTAKKIPFQLSPDGKSISVPADQVDAARLDVASNQ-STHSGRLGFEIFDK 116

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
           V S+G T F +++   RALEGE+ RTI ++ G+ +ARVH+VM     F        ASV 
Sbjct: 117 V-SWGQTEFDEKVNYQRALEGELERTIVTLGGVKSARVHLVMATDSVFLDREKSAKASVT 175

Query: 177 IRAINPSVY-KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ 235
           ++     +      +I+ LV+ AV  L   DV+++D+               G      +
Sbjct: 176 LKLNRGGLSHDETASIQRLVSGAVEGLKPTDVSIIDADSN------QSMGAAGDGAMGEE 229

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
             + ++   +   L   +G D+ R++V  E +  T +  +  YDP   V  +I+ S ++ 
Sbjct: 230 GAERQLTQRLMATLTPVVGGDHLRASVNVEYDPGTTEENQEKYDPAVSVPLTIQRSDEST 289

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
            +         T   N+P       P          K E + Y +N  +  +     +++
Sbjct: 290 GAGAGVGGVPGTT-SNVPQNKANVPPPVGEDSAQVSKTENATYGVNKITRHSLEPAGRIK 348

Query: 356 RLSIAVVVNKGRL----TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
           R++ A+VV+                   +    L +I  +   A G+++ RGD I++ ++
Sbjct: 349 RITAALVVDDSVKRKLGANGKWTEIRTKRSPQELKQIETLAQNAIGLDTTRGDVISVENL 408

Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471
            F      +   V    +D   +  +   + + + +  +L     +  +R +     A  
Sbjct: 409 AFDRPDEPDVAPVTA--LDRARKGVSDFSSVVRYAMLLILFVLAYVLMIRPVQKKVLAVS 466

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
            ++  + +L   P  +A    L P+ ++A   + ++                      ++
Sbjct: 467 VQLPQQPLL---PEMAAALPLLAPSTSMARALALKE----------------------QV 501

Query: 532 LHMIEINEERFAKILRKWARSEIE 555
           +  ++   E  A++++ W R E E
Sbjct: 502 VQQVKSEPEGSARVVQAWLRGEAE 525


>gi|260893875|ref|YP_003239972.1| flagellar M-ring protein FliF [Ammonifex degensii KC4]
 gi|260866016|gb|ACX53122.1| flagellar M-ring protein FliF [Ammonifex degensii KC4]
          Length = 498

 Score =  316 bits (811), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 121/561 (21%), Positives = 212/561 (37%), Gaps = 70/561 (12%)

Query: 1   MAILDQ-LLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           MA+  + + + +KS   S    + + +    +  I   +    ++   +Y  L+  L   
Sbjct: 1   MALATKPVWERWKSRWESFSPVQRVAVVVAGVALIACCVFLPLYLAQLNYAPLFKGLRPE 60

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG-LPSSSSNSGYELFDKV 117
           D   +   L E  + +R++D G++I VP   V K R  LAA+G LP   +  G+ELFDK 
Sbjct: 61  DAGAVVQKLEEMKVPYRMTDGGTTILVPKDQVYKVRAELAAKGALP--GAGKGFELFDKT 118

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM- 176
              G+T F +++   RAL+ E+ RTI    G+  ARVH+V+P    F     +P+ASV+ 
Sbjct: 119 -RLGITDFEEQVNYQRALQEELRRTILQFDGVEDARVHLVLPPRSPFVTEQPKPSASVVL 177

Query: 177 -IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSI 233
            ++ +     +  E I  LV+ AV  L   DV V+D+ G++LT       +        +
Sbjct: 178 KLKPLEKLKPEQVEGIVALVSGAVQGLKPEDVRVIDTRGEVLTPPTQGGEVGAVRNQQEL 237

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293
           V A + E+E  +   L   LG       V A+ +   +++  +   P  +V  S     +
Sbjct: 238 VLAFERELERRVKNLLDQILGPGKAAVMVNADFDFSRREV--VTVLPQGQVPVSEHTLTE 295

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
              ++ +   +                      +N  K+E   NY++  +         +
Sbjct: 296 QGAAQAAAGVAPT------------YPAGGAGGQNYSKQETTRNYQVGEQREKVIEVPGR 343

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           L RL+ +VVV+                    + +I  +V+ A G N +RGD IT+ S  F
Sbjct: 344 LRRLTASVVVDGN-------------LDPVTMQKIQNLVAGALGYNPQRGDQITVDSFTF 390

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
                               +  A                       RRL+ +  A  G 
Sbjct: 391 DRTYQRQMEAEMAKAEAKARQEAAK----------------------RRLYTLIGAGAGG 428

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
           + G  +L                + +   +          +           Q    +  
Sbjct: 429 LLGLVLLLLLRRRLRRAPEAPVVEEVVPVAVTAVPPPSPTD-----------QKFAEVKE 477

Query: 534 MIEINEERFAKILRKWARSEI 554
           + E   E  A+I++ W RSE 
Sbjct: 478 LAEKRPEEVAEIIKVWLRSEE 498


>gi|167630289|ref|YP_001680788.1| flagellar m-ring protein flif, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167593029|gb|ABZ84777.1| flagellar m-ring protein flif, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 511

 Score =  316 bits (811), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 132/560 (23%), Positives = 217/560 (38%), Gaps = 75/560 (13%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
            L R + LIL   ++  I+   A  +    P Y  L+  L+ +D   I   L E  +DF+
Sbjct: 3   RLSRQQKLILGGSLVAIIVSLAAFVYLAGRPDYVPLFQNLDPADAGAIQAKLKEQKVDFQ 62

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135
           +S++G +I VPS      RI LA  GLP   +  G+E F   + FG T   +EI    A 
Sbjct: 63  VSEDGKTILVPSKDQASLRIELANSGLPK-GTGWGFETF-NESRFGETEKEKEIRLKIAT 120

Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI--RAINPSVYKSAEAIRH 193
           E E++RT+Q+I G+  ARV IV      F+      TASVM+  +       K    I H
Sbjct: 121 ETELSRTLQNIPGVENARVMIVPATDSLFKGNATDATASVMLILKPYATLEEKQIRGIIH 180

Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLTANEME---------RNILGKSLSIVQAIQHEIEMN 244
           LV+ +V  L   +VTV+D+TG +L+                +    L + +  +  +E  
Sbjct: 181 LVSRSVKQLKPENVTVVDNTGNVLSEGLFTAGGSDKVNLDGLAKAQLQMKKDFEASLEQK 240

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
               L   LG  N    V  EL+   Q+++++       V  S R +++A +  T     
Sbjct: 241 AQDMLNRALGAGNAVVKVSTELDFSQQEVKDVKLG--KPVPLSTRETEEAGQGSTGS--G 296

Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK-LERLSIAVVV 363
                 N+P     +     +  +  K +   N EI      T       L+RLS++V+V
Sbjct: 297 TPGTSANIP----TQQATNNNTSSYSKTDSIVNNEIPKTETHTVTPPGSSLKRLSVSVMV 352

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN----------SRRGDTITITSMDF 413
           N+                     ++ K V+ A GI             R + I++  M F
Sbjct: 353 NR-------------TLTPEETQQLEKAVAQAVGIRYPIQPPAAGQPDRVEQISVLGMAF 399

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
             + +      +++ M    + F   +     L+   L+   GL+A R       A   E
Sbjct: 400 DRSAVD-----EMNRMAEEQKAFQRYLMIGGALIALALLVMAGLYARRAYLRRKPAPAPE 454

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
                 L  P   ++V T  +P              S     +  +          ++  
Sbjct: 455 -----PLPSPAFDTSVPTPPVPE------------LSPEEMEKLALR--------EKIEE 489

Query: 534 MIEINEERFAKILRKWARSE 553
           + E N E  A++L+ W   E
Sbjct: 490 LSETNPEAVARLLKTWLVDE 509


>gi|27904573|ref|NP_777699.1| flagellar M-ring protein [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|38257545|sp|Q89B00|FLIF_BUCBP RecName: Full=Flagellar M-ring protein
 gi|27903970|gb|AAO26804.1| flagellar M-ring protein [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 555

 Score =  316 bits (810), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 114/464 (24%), Positives = 201/464 (43%), Gaps = 50/464 (10%)

Query: 1   MAILDQ-LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           + + ++ L + F S  SL    +L++  + L+   +F          +Y  LY  L   D
Sbjct: 9   LNVKNRDLKRNFFSNLSLNVRVLLLVFLITLIVFYIFFFKPL-----NYSILYNNLSNDD 63

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I   L    I F+ + N S + +PS+ + K  + LA QGLP      G+EL D    
Sbjct: 64  EKSIVSRLISLKIPFKFNQNHSELLIPSNALKKVYLDLAEQGLPKE-KKVGFELLD-TEK 121

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           FGL+ F +E+   RALEGE+AR+IQ +  I  ARVHIV+     F +    P+ASV++  
Sbjct: 122 FGLSQFNEEVNYERALEGELARSIQKLENIKTARVHIVLSKSSVFIREKKIPSASVILEI 181

Query: 180 INPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSLSIVQ 235
                       +I H+VA  V NL + ++T++D  G LL++       +     L    
Sbjct: 182 KPGRYLNYNQINSILHIVAQGVSNLQIENITIVDQFGNLLSSMNDLYNDSYSNNQLKYSN 241

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD----SKVERSIRLS 291
            I+   +  I   L   +GV+N  + V A+++ D Q+  E  + P+     +  RS++  
Sbjct: 242 EIETGYKNKIESVLVPLVGVNNIHAQVTAQISFDKQENSEERFTPNYSNEKQSVRSVQNK 301

Query: 292 KDAQRSET------SQPESAVTVE--------------QNMPHVSDRKVPLPRSLEN--- 328
           K+ + SE       S  +  ++ +               N+P+ S++      S  N   
Sbjct: 302 KNIEFSEKYSDNSFSSNQGVLSNKKLNDLSNSSLLFNHNNIPNFSEQVSSTKNSKRNLSD 361

Query: 329 -------TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI 381
                  +  +    NYE++        +   ++RLS+AVV+N  +              
Sbjct: 362 ESVIPQSSTNQNYIVNYELDHVISHNKFNVGNVKRLSVAVVINYVKDKHGK----FVSLS 417

Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425
              L  I K+V  + G + +RGD++++ +  F   +++      
Sbjct: 418 TDKLNSIKKLVCESVGFSRKRGDSVSVVNFKFSTPEVYFQSPPS 461


>gi|323225205|gb|EGA09449.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
          Length = 366

 Score =  316 bits (810), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 91/352 (25%), Positives = 167/352 (47%), Gaps = 8/352 (2%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L++     +  R  +++  S     + + +A   +  +P Y  L+  L   D   I   L
Sbjct: 14  LEWLNRLRANPRIPLIVAGS---ATVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQL 70

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           ++ NI +R ++   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +
Sbjct: 71  TQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSE 128

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
           ++   RALEGE+ARTI+++  + +ARVH+ MP    F +    P+ASV +          
Sbjct: 129 QVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDE 188

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMN 244
               A+ HLV++AV  L  G+VT++D +G LLT +N   R++    L     ++  I+  
Sbjct: 189 GQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRR 248

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           I   L+  +G  N  + V A+L+   ++  E  Y P+    ++   S+    SE      
Sbjct: 249 IEAILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGY 308

Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
              V   + +        P +   T+++  Q+  + +T + + +      +R
Sbjct: 309 PGGVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRNTQR 360


>gi|153951308|ref|YP_001398635.1| flagellar MS-ring protein [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152938754|gb|ABS43495.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 560

 Score =  316 bits (809), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 113/568 (19%), Positives = 225/568 (39%), Gaps = 27/568 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNS-----PHYDNLYVKL 55
           M   + L Q  +   +L R + +++A+ I+V +   +    F  S       Y  L   +
Sbjct: 1   MDFKNMLYQIGQLYQNLTRKQRIVIATSIVVVVGFLVFLALFRGSGSNANNGYAVLVENV 60

Query: 56  EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115
             S    I   L + NI +++    + I VP   + + R+ +A++G    S   G+E FD
Sbjct: 61  SPSSSAAIVAKLEQNNIPYKLESE-NKILVPQDQIYRQRMFIASEGFIKDSR-VGFEAFD 118

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
              +FG T+  Q++   RA+EGE+ARTI+++  I +A VHI  P    F +    PTASV
Sbjct: 119 -TQAFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASV 177

Query: 176 MIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLS 232
           ++          K  + I+++V+AAVP L   +V + D +G  L   E  E +++   + 
Sbjct: 178 VVNVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIK 237

Query: 233 IVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
                +  +E  I + LA F  G+D  + +V  + +   Q+ +  +YDP+  V     L+
Sbjct: 238 FKSDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLN 297

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           ++    +  + +       N+  V    +     ++   K +  +N E++          
Sbjct: 298 EERTGRKDPEIQGVPGAVSNIGPV--EGLDNKGQIDTYKKNQVTTNNELSKTITNIKKQF 355

Query: 352 YKLERLSIAVVVNKGRL----TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
             + R S AV ++             +S         LA +  IV  A   ++ RGD++ 
Sbjct: 356 ATVLRTSAAVTIDGRYQDVVDENGDVKSEYVPLTKEELASVESIVKNAINFSATRGDSVV 415

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + ++ F    +     V+       +R     I  + + +  +L+       +       
Sbjct: 416 VQNLPFHRESIRVESKVKT----FYNRFVEPFIPPVKYFIAAILLFIFYKKVIAPFTQKM 471

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
              +     + +   P          +   N       + +       +  I   V  + 
Sbjct: 472 L--EDVAAQEEMQQGPNAVLDDAEDALEKFNAVKKKVEEQLGFGDNFNEDSIQYEVLLE- 528

Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555
             +L  ++    E  A +L+   +++ E
Sbjct: 529 --KLRGLVSDKGEEIAALLQNLIQNDSE 554


>gi|147678424|ref|YP_001212639.1| flagellar MS-ring protein [Pelotomaculum thermopropionicum SI]
 gi|146274521|dbj|BAF60270.1| flagellar biosynthesis/type III secretory pathway lipoprotein
           [Pelotomaculum thermopropionicum SI]
          Length = 506

 Score =  316 bits (809), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 114/563 (20%), Positives = 218/563 (38%), Gaps = 68/563 (12%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M+  D   +F +   SL +T+ +I   V    ++           P Y  L+  LE  D 
Sbjct: 1   MSPGDLAARFRERWQSLSQTQKVISVLVASGALVCLFYLGQLATRPAYAPLFTGLEPKDA 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L    I ++I+D G +I VP   V + RI LA+          G+ELFD+ +  
Sbjct: 61  GVIVDELKALKIPYQIADEGKTIKVPEDKVYEVRIQLASS-GALGGGGMGFELFDQ-SKL 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           G T F Q++   RAL+ E+ RTI  + G+  ARVH+V+P    F      P+A+V ++  
Sbjct: 119 GQTDFEQQVGYQRALQEELRRTIVQLEGVEQARVHLVIPQKSVFIGERGTPSAAVALKLK 178

Query: 181 NPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN------EMERNILGKSLS 232
             +  K    + I  L+  +V  L   +V ++D+ G +L+ +       +      +   
Sbjct: 179 PAARLKPEQVQGICDLLVGSVEGLKPENVHIIDTEGNVLSDDLKSGEWAVGTKTALEHQK 238

Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292
             +  + E+E  + + L   +G +   + V A+L+ + QQ    V    + +  S  + +
Sbjct: 239 ARREYEKELEKRVQQMLTQIMGQNKAVAMVTADLDFNQQQTTSTVSSNPNNLRISEHIVR 298

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
           +      +             ++S           N  ++E   NY++NT          
Sbjct: 299 ETGGGTEAGGPPGTD-----SNLSTYPALQGAGTTNYSREESTINYQVNTVQETVVKAPG 353

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
            + RLS +VV+N             +      + ++  +V+AA G +  RGD I ++SM 
Sbjct: 354 TVRRLSASVVLN-------------ETDGPVDVQKVRDVVAAAIGYDQARGDQINVSSMA 400

Query: 413 FLEN---QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
           F ++   ++        S      R +   ++    L+  L +  L L   R +  +++ 
Sbjct: 401 FDDSYLKKVEAEMAEAESRARFKERLYLYALSGGALLLVVLSILALLLWRRRAVQRVEE- 459

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
                                               +  F   R +Q++    + +    
Sbjct: 460 ------------------------------------EPEFVTVREMQAQEERRIREDKQE 483

Query: 530 RLLHMIEINEERFAKILRKWARS 552
           ++  M +   +  A+IL+ W + 
Sbjct: 484 QIRDMAKERPKDVAEILKVWLKD 506


>gi|54307259|ref|YP_128279.1| flagellar MS-ring protein [Photobacterium profundum SS9]
 gi|46911679|emb|CAG18477.1| Hypothetical FliF Flagellar M-ring transmembrane protein
           [Photobacterium profundum SS9]
          Length = 560

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 121/576 (21%), Positives = 241/576 (41%), Gaps = 40/576 (6%)

Query: 3   ILDQLLQFFKSGTSLGR----TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           ++ Q L    S +++GR    TR+++L  +I   +   +    +  +  Y  LY + E  
Sbjct: 4   LMKQRLSNMASPSAMGRLLTGTRLIVLLGLIAALVTTAVVIGLWQGNSQYRPLYGEQEKF 63

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
           D +++   L +  +D+ I     ++ V    VGKAR+ LAA G+  +   +G ++  + +
Sbjct: 64  DRSQVISVLEQQGMDYYIEPQQGNVMVDRDSVGKARLALAAAGI-EAQLPAGLDILSQDS 122

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMI 177
           S G + F++       LEGE+A +I ++  I   RVH+ +P    F R+   +P+ASV++
Sbjct: 123 SLGTSQFIESARYRHGLEGELALSIMALDAISNVRVHLAIPKKTLFVRREKEQPSASVVL 182

Query: 178 RAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSL 231
              +      +   AI +LVA +VP+L+   V V+D  G+LL++               L
Sbjct: 183 SLSSGRELTTEQVTAIVNLVAGSVPDLNAERVNVIDQKGRLLSSVINREGKHSRNSSSYL 242

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
             VQ ++        + L   +G+DNF+  V A++N D  +  E  Y PD  V       
Sbjct: 243 EYVQKLEQSYIKRAARMLRPMVGIDNFQVEVAADINYDRTEATEESYAPDGSVRNEFSTI 302

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
               R      +       N P     +          ++ E   +Y ++     T +  
Sbjct: 303 ---DRRIGKAAQGVPGALSNRPPEDGEEEDPNAG---NERSESSRDYALDRVLKHTLYQQ 356

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
            +++ LS+++++N                    LA I ++++ A GIN  RGD  +I   
Sbjct: 357 GQVKSLSVSILLNGQ----------PDTFPPEQLANIKQMLADAIGINEVRGDQFSILVY 406

Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471
            F + +        V +M ++   +   I  L  +V  +++  L   A+R+L   + +  
Sbjct: 407 PFTKAEANLLADEPVWWMQLIWLDYLRYI--LSAVVALVILLVLVRPAIRQLSGSNKSTA 464

Query: 472 GEVGGKSILSPPPISSAVTTGL---MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
                  +++    S +  T L      +  A+ ++ +   +   ++ +  N       +
Sbjct: 465 LTAPNDKLVAITGESVSENTALNNDTSPEIEAVPATEKTETTSLSSVVTSENYLELPSPE 524

Query: 529 LRLL-------HMIEINEERFAKILRKWARSEIEDR 557
             L         + E   ER A ++++W   + +D+
Sbjct: 525 TGLEVQSSYLQMLSEKEPERVAHVVKQWITPKDDDK 560


>gi|114566385|ref|YP_753539.1| flagellar M-ring protein FliF [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337320|gb|ABI68168.1| flagellar M-ring protein FliF [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 540

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 116/529 (21%), Positives = 221/529 (41%), Gaps = 55/529 (10%)

Query: 43  VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL 102
                Y+ LY +L+  D ++I+  L E  + +++ + G++I VP  +  K R+ LA++ L
Sbjct: 49  SRDTAYEVLYTELDKKDASQITAKLDEGKVPYKLENGGTTILVPPDLKDKTRLTLASENL 108

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162
           P     +G+ELF + + FG T   +++    AL+GE+AR+IQS+  + AA+V++ +P+  
Sbjct: 109 PRG--ETGFELF-QESKFGETQVDKKVKYQVALQGELARSIQSLDKVKAAKVNLALPEST 165

Query: 163 SFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-- 218
            F      P ASV++          K  + I +LVA +V  L   +V ++D  G L++  
Sbjct: 166 LFSDNEELPKASVVVNTREEEKLSPKEIQGIINLVANSVDKLTTENVVIVDQHGNLVSEN 225

Query: 219 ---ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
              AN      +   +++ +  + E +  I   L   LG +N    V AEL+ D ++ ++
Sbjct: 226 LPMANGDISETVKWQMAMKRQYEKEKQDAIQSMLDKSLGQNNSVVRVNAELDFDNKEQKD 285

Query: 276 IVYDPD--SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKE 333
            +Y  D      RS  + K++    T         + N+P    ++V     +   DK  
Sbjct: 286 ELYSHDDAGPFVRSEEIKKESGTDTTQPVVGVPGTDTNIPQY--QEVDAAGGVSTYDKSS 343

Query: 334 EQSNYEINTKSIATTHDNYKLE--RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKI 391
           +  NYEIN     T      ++   L++AV+VN      +     +    +  +A I  I
Sbjct: 344 KIRNYEINKTEKVTKVAQGDVKYDYLTVAVLVNSKATEPLKLGETE----EEKIATIRNI 399

Query: 392 VSAATGINSRR-------GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALV 444
           V+ A G+   R        D I++  +DF       +     +   I+       + A +
Sbjct: 400 VATACGLRENRKDESVRLEDNISVAFVDFYTEPQ--AEAPGGTMDQIMRSPLTPWLLAFL 457

Query: 445 FLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSS 504
            ++  LL  +L                 +   +         + + T  +  + I ++  
Sbjct: 458 VVLIILLAWWLM----------------QRRERRRAEEEAEEAGIDT--LIQEEIRVEDL 499

Query: 505 NQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
            +   S     + +I           +  +I  N E  A++L+ W   E
Sbjct: 500 IETGLSPEEKERRKIREE--------IDRIINENPEIAAQVLKTWLAEE 540


>gi|117624078|ref|YP_852991.1| flagellar M-ring protein [Escherichia coli APEC O1]
 gi|115513202|gb|ABJ01277.1| Flagellar M-ring protein [Escherichia coli APEC O1]
          Length = 333

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 93/317 (29%), Positives = 155/317 (48%), Gaps = 12/317 (3%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           + +         LI+A    V +M+  A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 13  WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 71  NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +          
Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI 188

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINK 247
            AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++  I+  I  
Sbjct: 189 SAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQRRIEA 248

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS----KVERSIRLSKDAQRSETSQPE 303
            L+  +G  N  + V A+L+  +++  E  Y P+        RS +L  ++++S +  P 
Sbjct: 249 ILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQL-NESEQSGSGYPG 307

Query: 304 SAVTVEQNMPHVSDRKV 320
                  N P  ++   
Sbjct: 308 GVPGALSNQPAPANNAP 324


>gi|256833241|ref|YP_003161968.1| flagellar M-ring protein FliF [Jonesia denitrificans DSM 20603]
 gi|256686772|gb|ACV09665.1| flagellar M-ring protein FliF [Jonesia denitrificans DSM 20603]
          Length = 534

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 120/556 (21%), Positives = 224/556 (40%), Gaps = 34/556 (6%)

Query: 3   ILDQLLQFFKSGTSLGR-----TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEV 57
           +  Q+   F    S  R      R L L  +  V + L +A   +   P    LY  L  
Sbjct: 1   MPQQITNVFTRLFSAIREFTVAQRTLALIGLAGVIVAL-VALAMWATRPQMQPLYTDLAP 59

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
           +D   I   L+   + +++++ GS+I VPS  V   R+ +A+ G+ S S+  GY L D  
Sbjct: 60  ADAAAIVDQLAANGVQYQLTNGGSTILVPSGQVYDQRLKVASSGI-SPSAEGGYSLLD-N 117

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
                + F Q +T  RALEGEIA+TI +++GI  A V + MP+   F    A PTASV +
Sbjct: 118 MGMTSSDFQQNVTYKRALEGEIAKTITAMNGIEVASVQLAMPEDTVFVSQSADPTASVFV 177

Query: 178 RAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ 235
           +             AI   V+AAV  + + +V V+DS G++L+A        G +L   Q
Sbjct: 178 KPKAGVTLADDQVAAITQFVSAAVEGMKVENVAVIDSDGQVLSA-MGGSGTHGTNLKETQ 236

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
             +  I  ++   L   LG      +V AEL+ D  +     YD +             +
Sbjct: 237 QYEQRIAASLQGMLDRILGNGMAVVSVTAELDFDATERVSESYDSNEDALPLTERETTEE 296

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
            + T      +  +       +  VP  ++  N      + N  ++  +         + 
Sbjct: 297 YTGTGNAAGVLGPD-------NIAVPEGQTDGNYTNTSSERNNAVDKTTERIVTAPGTVR 349

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           R S++V V++            Q      + ++  +V+AA GI+  RGDT+T+T M F +
Sbjct: 350 RQSVSVAVDQ------------QAAATININDLQAMVTAAAGIDEERGDTVTVTRMAFDD 397

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
                +     +     +      +   + +    LV+ + L  +       +    +V 
Sbjct: 398 TTAQAAAEALTAAEAEAAEAAQMEMYRNLGIAAIALVSIIALSIVAAARRRRNRMPQQVE 457

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
            +++       + V       +   L+         + + ++ + +   +Q    ++ + 
Sbjct: 458 QEALDLGEVELAPVPAYNAAAELEQLEFPEMPELPAAPDDKA-LRAEKKRQD---VVTLA 513

Query: 536 EINEERFAKILRKWAR 551
           + + ++ A+IL +W  
Sbjct: 514 DEDPKQMAEILNEWIS 529


>gi|283955204|ref|ZP_06372705.1| flagellar M-ring protein [Campylobacter jejuni subsp. jejuni 414]
 gi|283793241|gb|EFC32009.1| flagellar M-ring protein [Campylobacter jejuni subsp. jejuni 414]
          Length = 560

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 115/565 (20%), Positives = 223/565 (39%), Gaps = 26/565 (4%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPI---MLFMAARFFVNSPHYDNLYVKLEVS 58
            +  Q+ Q +++ T   R  I     V++  +    LF  +    N+  Y  L   +  S
Sbjct: 5   NMFHQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRGSGGNANN-GYAVLVENVSPS 63

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
               I   L + NI +++    + I VP   V + R+ +A++GL   S   G+E FD   
Sbjct: 64  SSAAIVAKLEQNNIPYKLESE-NKILVPQDQVYRQRMFIASEGLIKDSR-VGFEAFD-TQ 120

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178
           +FG TS  Q++   RA+EGE+ARTI+++  I  A VHI  P    F +    PTASV++ 
Sbjct: 121 AFGATSEEQKVKYQRAIEGELARTIETLEPIRNAVVHIAFPKDSVFTERQIPPTASVVVN 180

Query: 179 AINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQ 235
                    K  + I+++V+AAVP L   +V + D +G  L   E  E +++   +    
Sbjct: 181 VREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIKFKS 240

Query: 236 AIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
             +  +E  I + LA F  G+D  + +V  + +   Q+ +  +YDP+  V     L+++ 
Sbjct: 241 DQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLNEEK 300

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
              +  + +       N+  V    +     ++   K +  +N E++            +
Sbjct: 301 TGRKDPEIQGVPGAVSNIGPV--EGLDNKGQIDTYKKNQVTTNNELSKTITNIKKQFATV 358

Query: 355 ERLSIAVVVNKGRL----TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
            R S AV ++             +S         LA +  IV      ++ RGD++ + +
Sbjct: 359 LRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEELASVESIVKNTINFSATRGDSVVVQN 418

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           + F    +     V+       +R     I  + + +  +L+       +          
Sbjct: 419 LPFHRESIRVESKVKT----FYNRFVEPFIPPVKYFIAAILLFIFYKKVIAPFTQKML-- 472

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
           +     + +   P          +   N A     + +       +  I   V  +   +
Sbjct: 473 EDVAAQEEMQQGPSAVLDDAEDALEKFNAARKKVEEQLGFGDNFNEDSIQYEVLLE---K 529

Query: 531 LLHMIEINEERFAKILRKWARSEIE 555
           L  ++    E  A +L+   +++ E
Sbjct: 530 LRGLVSDKGEEIAALLQNLIQNDSE 554


>gi|229544393|ref|ZP_04433451.1| flagellar M-ring protein FliF [Bacillus coagulans 36D1]
 gi|229324878|gb|EEN90555.1| flagellar M-ring protein FliF [Bacillus coagulans 36D1]
          Length = 529

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 115/568 (20%), Positives = 214/568 (37%), Gaps = 65/568 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
              L  F+KS +   +T   I  S + + ++L     +F+    Y  LY  L+VS+   I
Sbjct: 9   FQNLKGFWKSRSKKQKT---IGISAVALMLVLAAGITYFMTKTKYAPLYSGLDVSETGSI 65

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L +  +  +I+D G +I VP   V   ++ LAA+GLP + S   Y  F +   FG+T
Sbjct: 66  KDELDQEGVPSKITDGGKTIEVPEDQVDDLKVTLAAKGLPKTGS-IDYSFFSQNAKFGMT 124

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI-GARPTASVMIRAINP 182
                + ++ A++ E+   I+ + G+  A+V I +P+   F     A+ +ASV++     
Sbjct: 125 DNEFNVVKLDAMQTELENLIEQMDGVEKAKVMINLPNQSVFVADSQAKASASVVLTLKPG 184

Query: 183 --SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL--LTANEMERNILGKSLSIVQAIQ 238
                   +A+ +LV+ +VPNL   ++ +++   +   L ++    N   +  +I + I+
Sbjct: 185 YELDQNQIKAVYNLVSKSVPNLPTDNIVIMNQNFEYYDLNSSNSSGNAYTQQQAIKKQIE 244

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-DSKVERSIRLSKDAQRS 297
            +I+  +   L+  +G       V A+++   ++  E + +P D    + I +S    + 
Sbjct: 245 RDIQQQVQTMLSTLMGAGKAVVTVTADIDFTQEKREEDLVEPVDKTNMKGIEISAKKIQE 304

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENT-DKKEEQSNYEINTKSIATTHDNYKLER 356
                 +A                   +   T  K  +  NYE+N      T   YK+  
Sbjct: 305 TYQGTGAAAGTPSGSTDSVGSSYVSGSNGNGTYSKTSDTINYEVNRIKRKITESPYKIRD 364

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT--GINSRRG---------DT 405
           L I V+V      E   R+       S L +I  ++S      I+   G         D 
Sbjct: 365 LGIEVMV------EPPVRTKRSSLPASRLKDIKSMLSTIVRTSIDKSSGTRLTNQTVADK 418

Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465
           I ++   F  N    +    + +           I   + LV   L+ F+          
Sbjct: 419 IAVSVQPFAANAPEKAKKASIPWW-------VYAIGGGLLLVIAGLIFFMIR-------- 463

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
            +  +      + +    P   A       N+    D+S                     
Sbjct: 464 -NRRRAASEAEEEMAEETPEKPAPPRIPDVNEEQETDASA-------------------- 502

Query: 526 QSDLRLLHMIEINEERFAKILRKWARSE 553
               +L  M +   + FAK+LR W   E
Sbjct: 503 -RRKQLEKMAKEKPDEFAKLLRSWLSEE 529


>gi|254255067|ref|ZP_04948384.1| Flagellar biosynthesis/type III secretory pathway lipoprotein
           [Burkholderia dolosa AUO158]
 gi|124899712|gb|EAY71555.1| Flagellar biosynthesis/type III secretory pathway lipoprotein
           [Burkholderia dolosa AUO158]
          Length = 537

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 113/562 (20%), Positives = 214/562 (38%), Gaps = 39/562 (6%)

Query: 3   ILDQLLQFFKSGTSLGRT-------RILILASVILVPIMLFMAARFFVNSPHYDNLYVKL 55
           +L+Q+          G           L+   V+ + +              +  L+   
Sbjct: 1   MLNQVKAALSRAMPSGMRLPSSASLMKLMPLVVLAICVTALAMMVMHHRDTRFKPLFGSQ 60

Query: 56  EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115
           E      +   L    I +RI      + VP S +G  R+ LAA+G+  +   +G +  D
Sbjct: 61  ESISAADMMTVLETEGIPYRIHPESGQVLVPESQLGATRMLLAAKGVV-AKLPAGLDQVD 119

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTAS 174
           K +  G++ F+Q++   R LEGE+ R+I S+  + +ARVH+ +    SF    G + +AS
Sbjct: 120 KSDPLGVSQFVQDVRFRRGLEGELVRSIVSVEPVESARVHLSVAKSSSFILADGDKSSAS 179

Query: 175 VMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS 232
           V++        K     AI  LVA +V NLD   VTV+D  G  L+A     +       
Sbjct: 180 VVLTLKQGRTLKKDQISAIVALVAGSVANLDPSRVTVVDQAGNHLSALIDPDSAAATDGE 239

Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292
               I+ E   NI + L   LG  NFR++V AE++ D  +     Y    KV       +
Sbjct: 240 FGARIREETLRNIRELLLPTLGDGNFRASVTAEIDHDRVEETRERYGDTPKVM------Q 293

Query: 293 DAQRSETSQPESAVTVEQNMP--HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
           +A R E    ++AV V  ++    ++          + + +  +   +  +   +     
Sbjct: 294 EATRDERDGAQAAVGVPGSLSNRPIAPPAASQTADAQQSGRNAQTRQFAYDRNVVKIKRS 353

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
             +L+RL++AVV+N             +      +  I+ ++    GI+  R D + +++
Sbjct: 354 PARLKRLNVAVVINNAAAPG-----GAKAWTPEQIERIDAVLRNGLGIDGARDDALVVSA 408

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           +DF       +             +  ++     + V  L +    L  L ++     A 
Sbjct: 409 LDFRAPPAVETLP-----WWKQPDNIVSMATWGGYAVAALSIFLFVLRPLIKILREWVAG 463

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
           +  V        PP+++            + +     +      L    +        L+
Sbjct: 464 REPV--------PPVATDAQQPADEPAPGSGNGLRAAMLPEDATLPPVGSDVDVLADHLK 515

Query: 531 LLHMIEINEERFAKILRKWARS 552
             ++     ER A++++ W R 
Sbjct: 516 --NLAHDAPERVAEVIKPWIRK 535


>gi|283955743|ref|ZP_06373234.1| flagellar M-ring protein [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792698|gb|EFC31476.1| flagellar M-ring protein [Campylobacter jejuni subsp. jejuni 1336]
          Length = 560

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 115/565 (20%), Positives = 225/565 (39%), Gaps = 26/565 (4%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPI---MLFMAARFFVNSPHYDNLYVKLEVS 58
            +  Q+ Q +++ T   R  I     V++  +    LF  +    N+  Y  L   +  S
Sbjct: 5   NMFHQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRGSGSNANN-GYAVLVENVSPS 63

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
               I   L + NI +++    + I VP   V + R+ +A++GL   S   G+E FD   
Sbjct: 64  SSAAIVAKLEQNNIPYKLESE-NKILVPQDQVYRQRMFIASEGLIKDSR-VGFEAFD-TQ 120

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178
           +FG T+  Q++   RA+EGE+ARTI+++  I +A VHI  P    F +    PTASV++ 
Sbjct: 121 AFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASVVVN 180

Query: 179 AINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQ 235
                    K  + I+++V+AAVP L   +V + D +G  L   E  E +++   +    
Sbjct: 181 VREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIKFKS 240

Query: 236 AIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
             +  +E  I + LA F  G+D  + +V  + +   Q+ +  +YDP+  V     L+++ 
Sbjct: 241 DQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLNEER 300

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
              +  + +       N+  V    +     ++   K +  +N E++     T      +
Sbjct: 301 TGRKDPEIQGVPGAVSNIGPV--EGLDNKGQIDTYKKNQVTTNNELSKTITNTKKQFATV 358

Query: 355 ERLSIAVVVNKGRL----TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
            R S AV ++             +S         LA +  IV      ++ RGD++ + +
Sbjct: 359 LRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEELASVESIVKNTINFSATRGDSVVVQN 418

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           + F    +     V+       +R     I  + + +  +L+       +          
Sbjct: 419 LPFHRESIRVESKVKT----FYNRFIEPFIPPVKYFIAAILLFIFYKKVITPFTQKML-- 472

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
           +     + +   P          +   N A     + +       +  I   V  +   +
Sbjct: 473 EDVAAQEEMQQGPNAVLDDVEDTLEKMNAARKKVEEQLGFGDNFNEDSIQYEVLLE---K 529

Query: 531 LLHMIEINEERFAKILRKWARSEIE 555
           L  ++    E  A +L+   +++ E
Sbjct: 530 LRGLVSDKSEEIAALLQNLIQNDSE 554


>gi|262273540|ref|ZP_06051354.1| flagellar M-ring protein FliF [Grimontia hollisae CIP 101886]
 gi|262222518|gb|EEY73829.1| flagellar M-ring protein FliF [Grimontia hollisae CIP 101886]
          Length = 548

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 120/545 (22%), Positives = 228/545 (41%), Gaps = 32/545 (5%)

Query: 21  RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80
           R + L   I V + + +    +     Y  LY + E  D N++  AL +   D+ +    
Sbjct: 26  RTVALLGTIAVAVAVAVVLGLW-QGGEYRPLYGEQEQYDRNQVIAALEQNRFDYYVEPQK 84

Query: 81  SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140
            +I V  S V  ARI +AA G+  +   +G E+ +K  + G + F++       LEGE+A
Sbjct: 85  GNIMVERSQVAAARIAMAAAGI-EAKVPAGLEILNKDFALGTSQFIENARYRHGLEGELA 143

Query: 141 RTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRAINPSVY--KSAEAIRHLVAA 197
           R+I ++ G+  ARVH+ +P    F  +    P+ASV++      V    +  AI +LVA 
Sbjct: 144 RSIMTLDGVSNARVHLALPKQTLFVGRNKELPSASVVVVLTPGRVLHSDNIAAIVNLVAG 203

Query: 198 AVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSLSIVQAIQHEIEMNINKALAAF 252
           +VP+L    V V+D  G LL+    +   +G     + LS  Q ++ E   +  K L   
Sbjct: 204 SVPDLQADRVNVIDQHGNLLSNQIGQGTGIGELGNSQYLSYTQKLEAEYIESAAKMLRPM 263

Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN- 311
           +GV+NF+  V A +N D  +  E  Y P   V        +  + E   PE     + N 
Sbjct: 264 VGVNNFQVEVAASVNFDRVEATEESYGPKGTVRNEFSSFDNEGQKE---PEGVPGTQSNR 320

Query: 312 MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV 371
           +P   +       +      K+    Y ++       +    +ERL+++V++N       
Sbjct: 321 LPEGKEDGDGTLVNKRGESSKD----YAVDRTLKHIKYQQGSVERLTVSVLLNGEA---- 372

Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDI 431
                 +   D+    I  ++  A G++  RGD +++    F  +      +    +MD 
Sbjct: 373 ------ESFSDAQRENIRTMLIDALGLDEARGDKLSLFVHPFNTDAPELLASTPSWWMDN 426

Query: 432 LSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTT 491
           +   +   I  L  +V  +++  +   A+R L   + +++    G +  +     +    
Sbjct: 427 IWLDYLRYI--LSAVVSLVILLVVIRPAVRALAQQNASRETVNAGANEGTLSRTVAGEFV 484

Query: 492 GLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWAR 551
           G   +  +  + S     +   +L +       + S L++  + E   ER A ++++W  
Sbjct: 485 GGSTDMAVGSEGSKTPAMNDMPDLPTPETGLEGQSSYLQM--LSEREPERVAHVVKQWMT 542

Query: 552 SEIED 556
            +  D
Sbjct: 543 PKNAD 547


>gi|71281873|ref|YP_268244.1| flagellar MS-ring protein [Colwellia psychrerythraea 34H]
 gi|71147613|gb|AAZ28086.1| flagellar M-ring protein FliF [Colwellia psychrerythraea 34H]
          Length = 563

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 100/570 (17%), Positives = 205/570 (35%), Gaps = 33/570 (5%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            I +Q   F  S  S+   R + +   + + + + +      N P Y  +  KL    + 
Sbjct: 10  GIGEQKSGFAASLGSVDILRQVTIVVALAICLAIAVFVIMLANEPEYRVI-SKLPTKQLI 68

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
                L    ++++  +N  +ISVP+      ++ LA +GL +   + G ++  K   FG
Sbjct: 69  TTMDFLDANQVEYQQENN--TISVPADEYQNVKLLLAREGL-TDEPSQGEDILMKDMGFG 125

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           ++  ++        E +IA+TI+ +  I  A+V + +P    F +    P+A+V++    
Sbjct: 126 VSQRLERERLKFGREQQIAKTIEQLKSISRAKVLLAIPRENIFARREKNPSATVVLTMQR 185

Query: 182 P--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAI 237
                 +  +A+  +VA+AV  L    VTV D  G+LL +   +   +   K   I Q  
Sbjct: 186 GKILSEEEVDAVVDIVASAVQGLTPNRVTVTDQNGRLLNSGSQDSISSRSRKEFEIEQKR 245

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           + E    I+  L   +G+ N+ + V   ++    +  +  Y+ D    RS    +     
Sbjct: 246 EQEYMEKIDSILIPVVGLGNYTAQVDITMDFTNVEETQRRYNSDLPALRSEMSVESTNIG 305

Query: 298 ETSQPESAVTVEQNMPHVS-----DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
                        N P ++     D      RS+ +    E   NYE++     T     
Sbjct: 306 --GALGGIPGALTNQPPIASAIPEDATGGQKRSMPSRKHSESTKNYELDEAISHTKQQAG 363

Query: 353 KLE--------RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD 404
            +              V             +    +     A I +++  + G + +RGD
Sbjct: 364 VVRRVSVSVALDYVAGVATTPVEGGANTPAATFAPRSAGETASIRRLLQGSIGFDLQRGD 423

Query: 405 TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
            + + ++ F          + +       +    V+ ALV +V  L V       L+RL 
Sbjct: 424 VLEVVTIPFNRPDYGVVAEIPIWQQPWFIKVLKLVLGALVIIVLILAV---VRPMLKRLI 480

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
             +     + G KS+     +       L  + +        D      +L      +  
Sbjct: 481 YPEQT-PDDYGDKSLDGHIDLGDETMDMLTSDFDAGAVGFAADGSLQLPDL------HRD 533

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEI 554
           +     +  ++    E  +++++ W   + 
Sbjct: 534 EDVLKAVRALVANEPELSSQVVKSWLNEDE 563


>gi|157414615|ref|YP_001481871.1| flagellar MS-ring protein [Campylobacter jejuni subsp. jejuni
           81116]
 gi|157385579|gb|ABV51894.1| flagellar M-ring protein [Campylobacter jejuni subsp. jejuni 81116]
 gi|307747255|gb|ADN90525.1| Flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni
           M1]
 gi|315931604|gb|EFV10570.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni
           327]
          Length = 560

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 116/565 (20%), Positives = 225/565 (39%), Gaps = 26/565 (4%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPI---MLFMAARFFVNSPHYDNLYVKLEVS 58
            +L Q+ Q +++ T   R  I     V++  +    LF  +    N+  Y  L   +  S
Sbjct: 5   NMLHQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRGSGSNANN-GYAVLVENVSPS 63

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
               I   L + NI +++    + I VP   V + R+ +A++GL   S   G+E FD   
Sbjct: 64  SSAAIVAKLEQNNIPYKLESE-NKILVPQDQVYRQRMFIASEGLIKDSR-VGFEAFD-TQ 120

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178
           +FG T+  Q +   RA+EGE+ARTI+++  I +A VHI  P    F +    PTASV++ 
Sbjct: 121 AFGATNEEQRVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASVVVN 180

Query: 179 AINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQ 235
                    K  + I+++V+AAVP L   +V + D +G  L   E  E +++   +    
Sbjct: 181 VREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIKFKS 240

Query: 236 AIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
             +  +E  I + LA F  G+D  + +V  + +   Q+ +  +YDP+  V     L+++ 
Sbjct: 241 DQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLNEER 300

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
              +  + +       N+  V    +     ++   K +  +N E++     T      +
Sbjct: 301 TGRKDPEIQGVPGAVSNIGPV--EGLDNKGQIDTYKKNQVTTNNELSKTITNTKKQFATV 358

Query: 355 ERLSIAVVVNKGRL----TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
            R S AV ++             +S         LA +  IV      ++ RGD++ + +
Sbjct: 359 LRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEELASVESIVKNTINFSATRGDSVVVQN 418

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           + F    +     V+       +R     I  + + +  +L+       +          
Sbjct: 419 LPFHRESIRVESKVKT----FYNRFVEPFIPPVKYFIAAILLFIFYKKVIAPFTQKML-- 472

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
           +     + +   P          +   N A     + +       +  I   V  +   +
Sbjct: 473 EDVAAQEEMQQGPNAVLDDAEDALEKFNAARKKVEEQLGFGDNFNEDSIQYEVLLE---K 529

Query: 531 LLHMIEINEERFAKILRKWARSEIE 555
           L  ++    E  A +L+   +++ E
Sbjct: 530 LRGLVSDKGEEIAALLQNLIQNDSE 554


>gi|57237369|ref|YP_178382.1| flagellar MS-ring protein [Campylobacter jejuni RM1221]
 gi|86153720|ref|ZP_01071923.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|57166173|gb|AAW34952.1| flagellar M-ring protein FliF [Campylobacter jejuni RM1221]
 gi|85842681|gb|EAQ59893.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|315057739|gb|ADT72068.1| Flagellar M-ring protein fliF [Campylobacter jejuni subsp. jejuni
           S3]
          Length = 560

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 116/565 (20%), Positives = 226/565 (40%), Gaps = 26/565 (4%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPI---MLFMAARFFVNSPHYDNLYVKLEVS 58
            +L Q+ Q +++ T   R  I     V++  +    LF  +    N+  Y  L   +  S
Sbjct: 5   NMLHQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRGSGSNANN-GYAVLVENVSPS 63

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
               I   L + NI +++    + I VP   V + R+ +A++GL   S   G+E FD   
Sbjct: 64  SSAAIVAKLEQNNIPYKLESE-NKILVPQDQVYRQRMFIASEGLIKDSR-VGFEAFD-TQ 120

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178
           +FG T+  Q++   RA+EGE+ARTI+++  I +A VHI  P    F +    PTASV++ 
Sbjct: 121 AFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASVVVN 180

Query: 179 AINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQ 235
                    K  + I+++V+AAVP L   +V + D +G  L   E  E +++   +    
Sbjct: 181 VREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIKFKS 240

Query: 236 AIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
             +  +E  I + LA F  G+D  + +V  + +   Q+ +  +YDP+  V     L+++ 
Sbjct: 241 DQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLNEER 300

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
              +  + +       N+  V    +     ++   K +  +N E++     T      +
Sbjct: 301 TGRKDPEIQGVPGAVSNIGPV--EGLDNKGQIDTYKKNQVTTNNELSKTITNTKKQFATV 358

Query: 355 ERLSIAVVVNKGRL----TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
            R S AV ++             +S         LA +  IV      ++ RGD++ + +
Sbjct: 359 LRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEELASVESIVKNTINFSATRGDSVVVQN 418

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           + F    +     V+       +R     I  + + +  +L+       +          
Sbjct: 419 LPFHRESIRVESKVKT----FYNRFVEPFIPPVKYFIAAILLFIFYKKVIAPFTQKML-- 472

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
           +     + +   P          +   N A     + +       +  I   V  +   +
Sbjct: 473 EDVAAQEEMQQGPNAVLDDAEDALEKFNAARKKVEEQLGFGDNFNEDSIQYEVLLE---K 529

Query: 531 LLHMIEINEERFAKILRKWARSEIE 555
           L  ++    E  A +L+   +++ E
Sbjct: 530 LRGLVSDKGEEIAALLQNLIQNDSE 554


>gi|241761170|ref|ZP_04759259.1| flagellar M-ring protein FliF [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|241374789|gb|EER64250.1| flagellar M-ring protein FliF [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
          Length = 619

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 121/614 (19%), Positives = 236/614 (38%), Gaps = 91/614 (14%)

Query: 2   AILDQLLQFFKS---GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
            + +++  F +      SL   R++ L ++  +         F +++P   +LY     +
Sbjct: 36  KVYERVKDFVQQPAIKRSLPLMRLISLTAIGAL-------IWFLLSAPPQRDLYPGAGDA 88

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
           D   I+ AL    I + I+     I+V      KAR+ LA QGLP S+ +  +       
Sbjct: 89  DRASIASALETGGIHYNINRGNGVITVSEKDYYKARMLLAQQGLPKSAPDGDH--VISSL 146

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178
             G +  ++      A E ++ARTI++I  +  ARVHI  P    F +     TASVM++
Sbjct: 147 PLGASRAVEGERLRAAREVDLARTIETIDVVNQARVHIAEPQPSPFVREQVHGTASVMLK 206

Query: 179 AINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQ 235
            +          +AI++LVAA++P +    V+V+D  G LL+A +  + +I  + L + Q
Sbjct: 207 LMTGRNLSNAQVQAIQNLVAASLPGMAPEAVSVVDQAGHLLSATSNADNDINDRQLRLQQ 266

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            ++      +NK L   LG +N+ + V  +L+    Q     Y P     RS   S +  
Sbjct: 267 TLEARYMDALNKLLVPLLGENNYTAEVHTDLDFTESQATRESY-PKEGSLRSESGSWNKD 325

Query: 296 RSETSQPESAVTVEQNMPHVSDRKV----------------------------------- 320
                Q         NMP                                          
Sbjct: 326 GGPD-QNGGIPGAMSNMPPTPANPTQNPPPNLQPPAQPNNQQNAQNGQQGQNAQGQPNGQ 384

Query: 321 --------------PLPRSLENTDKKEEQSN--YEINTKSIATTHDNYKLERLSIAVVVN 364
                         P   + +   +  E  N  YE+  +     +    ++R+S+A+ + 
Sbjct: 385 NAQQGQNARAPGSVPAETAQQAQARTSENFNRYYELGREVSVIRNPTGSVKRVSVAIALR 444

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424
           +            +      +A++ K++  A G ++ RGD + I+S DF+   +F+    
Sbjct: 445 QINHG--------KPPSPEQVAQLEKLIKGAIGFDASRGDVVAISSSDFMGGSVFSMPWY 496

Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPP 484
           Q S++ +L+R+ +        LV  L++       L+      + ++        L    
Sbjct: 497 QNSWVPLLARNLS------ALLVAALVIFGFARPFLKARAEAAERRRLAENPLPQLEQTN 550

Query: 485 ISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAK 544
           I + +  G  P +     +   D+   +   ++R++          + H ++ +  R A 
Sbjct: 551 IDNLIAEGEQPAEEAGSQAITLDMIDAAPGYKARVDL---------VRHFVKQDPARAAL 601

Query: 545 ILRKWARSEIEDRY 558
           ++    RS+++   
Sbjct: 602 VVHDMMRSDLKSLE 615


>gi|182412248|ref|YP_001817314.1| flagellar M-ring protein FliF [Opitutus terrae PB90-1]
 gi|177839462|gb|ACB73714.1| flagellar M-ring protein FliF [Opitutus terrae PB90-1]
          Length = 530

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 131/507 (25%), Positives = 219/507 (43%), Gaps = 23/507 (4%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L  LL+ +K    LG  + + L    L  +   +    +   P Y  LY +L   D   I
Sbjct: 5   LQSLLELWK---QLGLNQRVSLVVAALAVVAGLITVVLWSRRPDYQLLYARLSEKDAASI 61

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L   NI   ++  G+++ VPS  V K R+ LA++GLP S    G+E+FDK   FGL+
Sbjct: 62  IGQLQTQNIPHIVTAGGTAVQVPSDQVYKLRMDLASKGLP-SGDGVGFEIFDKGQ-FGLS 119

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA-RPTASVMIRAINP 182
            F+Q    +RA++GE+ARTI  + G+ AARV IV P+        + + TASV +     
Sbjct: 120 DFVQRTNYLRAVQGELARTIMQLQGVRAARVMIVQPENRLLLTDQSVKSTASVFVDVGGK 179

Query: 183 SV-YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAIQ 238
            +      AIRHLVA AV  L    V V+D+ G +L+     +         +   Q ++
Sbjct: 180 RLETDQVNAIRHLVANAVQGLAPDQVAVVDNRGHVLSEELKQDPTLGTASSQIRYRQQVE 239

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS- 297
                 +   LAA +G  N    V AE++ +   I E  +DP+ +V R+  +++D   S 
Sbjct: 240 DYFAKKVETMLAAVIGPGNAVVRVSAEIDTEAVAITEERFDPEGQVVRTQTVTEDTSSSA 299

Query: 298 ETSQPESAVTVEQNMPHVSDR-KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
           E+      V V  N+P  +   +   P S     +K   + YEIN  ++ TT +   ++ 
Sbjct: 300 ESRSAGGVVGVSANVPEKNPGTEAARPVSNTEQSRKNRSTTYEINRTTLNTTRNPGSVKN 359

Query: 357 LSIAVVVNK---GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI-TITSMD 412
           L+ AV V                 Q +    L  + ++V  A G+    G ++ T+ S+ 
Sbjct: 360 LTAAVFVAPRLAAPAAAGAAPGEPQRRSAEELNALRQLVVNALGLKIPAGQSLDTVVSLQ 419

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFL-----VGTLLVTFLGLHALRRLHNID 467
               Q       Q++ ++  +R    +     ++         LV +  L   R+     
Sbjct: 420 ETPFQSAEEIPAQIAAIEQENRWQGWIEAGSRWIAVVAAAAVFLVFWRMLR--RQKPEPV 477

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLM 494
             +   +  ++     P S+ VT  L+
Sbjct: 478 PIEVLSLSPEAATRSLPTSNGVTPDLL 504


>gi|86151498|ref|ZP_01069713.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|85841845|gb|EAQ59092.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni
           260.94]
          Length = 560

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 116/565 (20%), Positives = 226/565 (40%), Gaps = 26/565 (4%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPI---MLFMAARFFVNSPHYDNLYVKLEVS 58
            +L Q+ Q +++ T   R  I     V++  +    LF  +    N+  Y  L   +  S
Sbjct: 5   NMLHQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRGSGSNANN-GYAVLVENVSPS 63

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
               I   L + NI +++    + I VP   V + R+ +A++GL   S   G+E FD   
Sbjct: 64  SSAAIVAKLEQNNIPYKLESE-NKILVPQDQVYRQRMFIASEGLIKDSR-VGFEAFD-TQ 120

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178
           +FG T+  Q++   RA+EGE+ARTI+++  I +A VHI  P    F +    PTASV++ 
Sbjct: 121 AFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASVVVN 180

Query: 179 AINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQ 235
                    K  + I+++V+AAVP L   +V + D +G  L   E  E +++   +    
Sbjct: 181 VREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIKFKS 240

Query: 236 AIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
             +  +E  I + LA F  G+D  + +V  + +   Q+ +  +YDP+  V     L+++ 
Sbjct: 241 DQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLNEER 300

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
              +  + +       N+  V    +     ++   K +  +N E++     T      +
Sbjct: 301 TGRKDPEIQGVPGAVSNIGPV--EGLDNKGQIDTYKKNQVTTNNELSKTITNTKKQFATV 358

Query: 355 ERLSIAVVVNKGRL----TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
            R S AV ++             +S         LA +  IV      ++ RGD++ + +
Sbjct: 359 LRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEELASVESIVKNTINFSATRGDSVVVQN 418

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           + F    +     V+       +R     I  + + +  +L+       +          
Sbjct: 419 LPFHRESIRVESKVKT----FYNRFVEPFIPPVKYFIAAILLFIFYKKVIAPFTQKML-- 472

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
           +     + +   P          +   N A     + +       +  I   V  +   +
Sbjct: 473 EDVAAQEEMQQDPNAVLDDAEDALEKFNAARKKVEEQLGFGDNFNEDSIQYEVLLE---K 529

Query: 531 LLHMIEINEERFAKILRKWARSEIE 555
           L  ++    E  A +L+   +++ E
Sbjct: 530 LRGLVSDKGEEIAALLQNLIQNDSE 554


>gi|134300247|ref|YP_001113743.1| flagellar MS-ring protein [Desulfotomaculum reducens MI-1]
 gi|134052947|gb|ABO50918.1| flagellar M-ring protein FliF [Desulfotomaculum reducens MI-1]
          Length = 521

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 134/563 (23%), Positives = 238/563 (42%), Gaps = 60/563 (10%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +L++L Q ++  TS  R  ++IL S +++  ++++A       P+Y  L   LE  D   
Sbjct: 6   LLERLKQRWQE-TSQNRKVLVILVSTVVLAGLVYLAMTL--TKPNYAILLGDLEPKDAGD 62

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L    I +++ D G++I VP   V + R+ LA+ GL  +   +G+ELFDK + FG 
Sbjct: 63  IVAQLESEKIPYQLIDQGTTILVPQEQVDEIRVKLASDGL-LTGVGNGFELFDK-SKFGE 120

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T F Q+I+  RAL+ E+ RTI  + G+  ARVH+V+P    F +     +ASV+++    
Sbjct: 121 TDFEQQISYQRALQEELRRTITKVEGVEQARVHLVLPRKSVFIEEEGTASASVVVKLKPR 180

Query: 183 SVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----------ANEMERNILGKS 230
           +  K    + +  L+  +V  L   +V ++D+ G +L            N     IL + 
Sbjct: 181 AKLKAEQVKGLNDLIIGSVEGLQAENVHIIDTEGNVLNDFLKDSSGTPGNGFSGTILERQ 240

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV-ERSIR 289
             I +  + E+E  +   LA  LG +   + V AE++ +  Q       P   V ERSI+
Sbjct: 241 QQIRRTYEKELENRVQNMLAKVLGPNKAVAMVTAEMDFNQLQTNTTEVVPGQVVSERSIK 300

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
                         +     Q++P           S  +  K ++  NY+  T++ +   
Sbjct: 301 EQGSDGSGGGVTGSTTQMPGQSIP------AETSTSQNSYIKTDDTKNYQHGTRTQSEVQ 354

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
              KL +LS AVV+++                     ++ KIV+AA G + +RGD IT++
Sbjct: 355 APGKLIKLSTAVVLDESVKNLDR-------------TQVEKIVTAAIGFDDQRGDQITVS 401

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
           +M F  +Q      +  +        + T+   +  L+  LL+    L   R+       
Sbjct: 402 AMTFDRSQYDLDQDLPDNSQKEKELFYMTIAAVVGGLLLLLLLVAYWLRRRRK------N 455

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
            + E+      +P PI S  T                         +++      K    
Sbjct: 456 AEQELQVIEETTPMPIESVTTK-----------------EEEEEEEEAQWEIPPPKDKQK 498

Query: 530 RLLHMIEINEERFAKILRKWARS 552
           +L  + +   +  A +L+ W R 
Sbjct: 499 QLKELAQERPDDIASVLKVWLRE 521


>gi|255523704|ref|ZP_05390670.1| flagellar M-ring protein FliF [Clostridium carboxidivorans P7]
 gi|296186708|ref|ZP_06855110.1| flagellar M-ring protein FliF [Clostridium carboxidivorans P7]
 gi|255512573|gb|EET88847.1| flagellar M-ring protein FliF [Clostridium carboxidivorans P7]
 gi|296048745|gb|EFG88177.1| flagellar M-ring protein FliF [Clostridium carboxidivorans P7]
          Length = 529

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 111/569 (19%), Positives = 215/569 (37%), Gaps = 59/569 (10%)

Query: 4   LDQLLQFFKSG----TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           + +L Q FK+       L + + +    +    I   +    +  S  YD L+  +  +D
Sbjct: 1   MGKLSQVFKNLIEKWKGLSKKKKIAFGIIFTAVIGALIYLGIYFGSTKYDVLFSNMSSTD 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              +   L    +D ++   G+SI VP   V K R+ + ++ +  ++ + G+EL DK   
Sbjct: 61  SAAVYKQLQADKVDAKVQ--GNSILVPKGQVDKLRMQMLSE-VNMTNGSQGFELLDKT-K 116

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
            G T    +I   RAL+GE+ RTI+ +  I  ARV +V+PD   F K     +ASV ++ 
Sbjct: 117 LGSTDAEMKINYQRALQGELERTIKGLPEIQNARVSLVLPDDTQFVKDTQPGSASVTLQM 176

Query: 180 INPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---------EMERNILG 228
                      +A+  LV+ +V N+   +V ++D    LL+ +                 
Sbjct: 177 KQGQKLNSDQVKALVALVSGSVKNVPKENVQIIDDKLALLSKDLFNDKKDITSDSTTSAE 236

Query: 229 KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288
           K   + Q  + E+E  ++  L A  G D  +  V A+L+ D  Q     YDP     +S+
Sbjct: 237 KQQELKQQYEKELEKKLSNMLEAVYGKDKVKVKVNADLDFDAVQQDSTTYDP-----KSV 291

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
            +S+   +  ++  +   T    + +             ++   E   NY+++     T 
Sbjct: 292 VVSEHNVKDTSTGGQGTATSSSPVDNNMTNTTTNNTGNGSSTHDESTKNYDVSEVKQKTI 351

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
                ++RL+ +V ++                       I+ +  +A G +++RGDTI +
Sbjct: 352 KAPGAVKRLTASVALDGNVDPTTK-------------TSISNLAVSAIGYDAKRGDTINV 398

Query: 409 TSMDF---LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465
             + F   L++Q            D   +    ++  L  L   +L   + L   RR   
Sbjct: 399 EGIPFDTTLKDQAKKDLDAMNKATDQAKKTKTYIM--LGILAAVILGAAVALFLWRRKKR 456

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
            ++    +     I          T        + L+S N+     +             
Sbjct: 457 EEEEDLFDEETGGIDVIVGDEMEPTKQQFKYKPVDLESENEQTHVENE------------ 504

Query: 526 QSDLRLLHMIEINEERFAKILRKWARSEI 554
                + +  +   E+ A I++ W   + 
Sbjct: 505 -----IKNYAKEKPEQVADIVKSWLAEDE 528


>gi|57168454|ref|ZP_00367588.1| flagellar M-ring protein FliF [Campylobacter coli RM2228]
 gi|305432873|ref|ZP_07402031.1| flagellar M-ring protein FliF [Campylobacter coli JV20]
 gi|57020262|gb|EAL56936.1| flagellar M-ring protein FliF [Campylobacter coli RM2228]
 gi|304444027|gb|EFM36682.1| flagellar M-ring protein FliF [Campylobacter coli JV20]
          Length = 560

 Score =  313 bits (802), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 115/565 (20%), Positives = 223/565 (39%), Gaps = 26/565 (4%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPI---MLFMAARFFVNSPHYDNLYVKLEVS 58
            +L Q+ Q +++ T   R  I     V++  +    LF  +    N+  Y  L   ++ S
Sbjct: 5   NMLHQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRGSGSGANN-GYAVLVDNVDPS 63

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
               I   L + N+ + +      I VP   V + R+ +A++GL   S   G+E FD   
Sbjct: 64  SSAAIVAKLEQNNVPYILESESK-ILVPQDQVYRQRMFIASEGLIKDSR-VGFEAFD-TQ 120

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178
           SFG T+  Q +   RA+EGE+ARTI+++  I +A VHI  P    F +    PTASV++ 
Sbjct: 121 SFGATNEEQRVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASVVVN 180

Query: 179 AINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQ 235
                    K  + I+++V+AA+P L   +V + D +G  L   E  E +++   +    
Sbjct: 181 VREGLKLTRKQIDGIKNIVSAAIPKLTKENVRISDQSGVPLDEQEAYEDDLVRAQIKYKS 240

Query: 236 AIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
             +  +E  I + LA +  G D  R +V  + +   Q+ +  +YDP+  V     L+++ 
Sbjct: 241 DQERALEDKIIETLAPYAGGTDKVRVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLNEER 300

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
              +  + +       N+  V    +     ++   K +  +N E++     T      +
Sbjct: 301 TGRKEPEIQGVPGAVSNIGPV--EGLDNKGQIDTYKKNQVTTNNELSKTITNTKKQFATV 358

Query: 355 ERLSIAVVVNKGRL----TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
            R S AV ++             +S         LA +  IV      ++ RGD++ + +
Sbjct: 359 VRTSAAVTIDGKYQDVVDENGDVKSEYVPLSKEELASVESIVKNTINYSANRGDSVVVQN 418

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           + F    +     V+        R     I  + +++  +L+       +          
Sbjct: 419 LPFHRESIRVESKVKT----FYGRFIEPFIPPVKYIIAAILLFIFYKKVIAPFTQKML-- 472

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
           +     + +   P          +   N A     + +       +  I   V  +   +
Sbjct: 473 EDVAAQEEVQQGPNAVLDDAEDALEKFNAARKKVEEQLGFGENFNEDSIQYEVLLE---K 529

Query: 531 LLHMIEINEERFAKILRKWARSEIE 555
           L  ++    E  A +L+   +++ E
Sbjct: 530 LRGLVSDKSEEIAALLQNLIQNDTE 554


>gi|284989556|ref|YP_003408110.1| flagellar M-ring protein FliF [Geodermatophilus obscurus DSM 43160]
 gi|284062801|gb|ADB73739.1| flagellar M-ring protein FliF [Geodermatophilus obscurus DSM 43160]
          Length = 527

 Score =  313 bits (802), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 110/555 (19%), Positives = 227/555 (40%), Gaps = 39/555 (7%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           A+   + +   +  ++   + +++  +    ++       ++ +P Y  L+  L  +D +
Sbjct: 4   ALAGPVERIRSALATISLGQKVVIGLLTAGLLLGGFFFYRWITAPTYAPLFSNLASTDAS 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L+ A   + ++D G +I VP+  V   R+ ++ +GLP + +++GY L D+     
Sbjct: 64  AIVDELNAAGAAYELADGGGTIMVPNEQVYDLRLSMSGKGLP-AGNDTGYALLDE-QGIT 121

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
            + F Q++T  RAL+ E+ART++S+ G+  A VH+ +P+   F    A PTASV++    
Sbjct: 122 TSEFQQQVTYQRALQDELARTLESLEGVRTAVVHLALPEEEVFASDEAEPTASVLLDLAP 181

Query: 182 --PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAI 237
                    +A+ +LV++++  +D   VTV D+TG +L+A               + Q  
Sbjct: 182 GTGLDSGQVQAVTNLVSSSIEGMDPEQVTVADATGAVLSAPGQGVTSAAGDARSQLEQDY 241

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           +  +  N    L   LG    + +V A++++D +      +  +   E +  +S+     
Sbjct: 242 EARLASNAQAVLDPILGPGRAKVSVRADVDLDQRSTTSETHTYE---EGTPPISESTTTE 298

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
           E +   +AV       + +D       S    +K+   +N  + T          ++ RL
Sbjct: 299 EYTGNGAAVGGILGPENQADAGGGTGDSA--YNKESTTANNAVGTTVETVEGAPGRINRL 356

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           +++VV+++     +              A+I  +V  A G++  RGD IT+ SM F    
Sbjct: 357 TVSVVMDEAVAGNLNQ------------AQIQALVGNAIGLDVARGDDITVASMAFDTTA 404

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
              +     +  +   +     +     +   +LV +L     R     +D +  E+   
Sbjct: 405 ADRAAEELAAAEEAERQAQLWSMVKTGGIALLVLVVWLRSRRGREDEEDEDYEALELADD 464

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
            +     I    T  +   DN AL+                + +    +    +  M+  
Sbjct: 465 VMAELDRIRIESTRAVPVVDNAALE----------------MEAAERARVRGEIATMVSE 508

Query: 538 NEERFAKILRKWARS 552
             +  A +LR W   
Sbjct: 509 KPDEVAAMLRGWLSE 523


>gi|121612614|ref|YP_001000028.1| flagellar MS-ring protein [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167004986|ref|ZP_02270744.1| flagellar MS-ring protein [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|87250495|gb|EAQ73453.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 560

 Score =  313 bits (802), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 116/565 (20%), Positives = 226/565 (40%), Gaps = 26/565 (4%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPI---MLFMAARFFVNSPHYDNLYVKLEVS 58
            +L Q+ Q +++ T   R  I     V++  +    LF  +    N+  Y  L   +  S
Sbjct: 5   NMLHQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRGSGSNANN-GYAVLVENVSPS 63

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
               I   L + NI +++    + I VP   V + R+ +A++GL   S   G+E FD   
Sbjct: 64  SSAAIVAKLEQNNIPYKLESE-NKILVPQDQVYRQRMFIASEGLIKDSR-VGFEAFD-TQ 120

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178
           +FG T+  Q++   RA+EGE+ARTI+++  I +A VHI  P    F +    PTASV++ 
Sbjct: 121 AFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASVVVN 180

Query: 179 AINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQ 235
                    K  + I+++V+AAVP L   +V + D +G  L   E  E +++   +    
Sbjct: 181 VREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRVQIKFKS 240

Query: 236 AIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
             +  +E  I + LA F  G+D  + +V  + +   Q+ +  +YDP+  V     L+++ 
Sbjct: 241 DQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLNEER 300

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
              +  + +       N+  V    +     ++   K +  +N E++     T      +
Sbjct: 301 TGRKDPEIQGVPGAVSNIGPV--EGLDNKGQIDTYKKNQVTTNNELSKTITNTKKQFATV 358

Query: 355 ERLSIAVVVNKGRL----TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
            R S AV ++             +S         LA +  IV      ++ RGD++ + +
Sbjct: 359 LRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEELASVESIVKNTINFSATRGDSVVVQN 418

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           + F    +     V+       +R     I  + + +  +L+       +          
Sbjct: 419 LPFHRESIRVESKVKT----FYNRFVEPFIPPVKYFIAAILLFIFYKKVIAPFTQKML-- 472

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
           +     + +   P          +   N A     + +       +  I   V  +   +
Sbjct: 473 EDVAAQEEMQQGPNAVLDDAEDALEKFNAARKKVEEQLGFGDNFNEDSIQYEVLLE---K 529

Query: 531 LLHMIEINEERFAKILRKWARSEIE 555
           L  ++    E  A +L+   +++ E
Sbjct: 530 LRGLVSDKGEEIAALLQNLIQNDSE 554


>gi|146277680|ref|YP_001167839.1| flagellar M-ring protein FliF [Rhodobacter sphaeroides ATCC 17025]
 gi|145555921|gb|ABP70534.1| flagellar M-ring protein FliF [Rhodobacter sphaeroides ATCC 17025]
          Length = 572

 Score =  313 bits (801), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 132/571 (23%), Positives = 225/571 (39%), Gaps = 39/571 (6%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            ++ QL QF          R  + A VIL   +L +A    +  P    LY  L  ++  
Sbjct: 23  GMVSQLRQF----GDQPGLRRAMPAIVILSVTVLALAGWILMREPSRVTLYPGLPEAEKA 78

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           R+   L+   I   I +    ++VP     +AR+ LAAQGLP    +    L D     G
Sbjct: 79  RVIDTLTGGGIAAVIDERTGEVAVPGGDYHRARMLLAAQGLPQGLPDGNAMLSDL--PMG 136

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
            +  ++     +A E ++AR+I  IS + AARVH+ +P+  +F +    P ASV ++   
Sbjct: 137 TSKSVETARLRQAQELDLARSITEISAVSAARVHLALPERSAFLRDSQPPRASVFLQVAP 196

Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAI 237
                    EAI +LV+++VP +   DVTV+D  G+LL+    +    +  + L     +
Sbjct: 197 GRALDGAQVEAIVNLVSSSVPGMARQDVTVVDQMGRLLSRGSDDPAVLLNDRQLQHRVQM 256

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           +      I   L+   G  N    V  +++   Q+IRE   DPD     S +   +   S
Sbjct: 257 ETLYRNRIESLLSPITGPGNLAVQVTIDMDFTRQEIREEQVDPDRTAILSEQSQVEE--S 314

Query: 298 ETSQPESAVTVEQNMPH--------VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
              Q         N P             +         +  +    N+EI+ K   T  
Sbjct: 315 ADPQARGIPGAVANAPPPEAALAEGAPPTEAGAAPPALRSRSQNSTRNFEISRKVETTLP 374

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQG--KIDSYLAEINKIVSAATGINSRRGDTIT 407
              ++ R+S AVV+            A       ++  A+++++  +A G +  RGD +T
Sbjct: 375 ATARIARVSAAVVIRAQPQPAPADPEAPSPPLLPEALQADLDRLTRSAIGFDETRGDVVT 434

Query: 408 ITSMDFLENQLFNSG--TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465
           IT+  FL+  +      T Q    D+  + F     A+V            L  +R + N
Sbjct: 435 ITAQPFLDTIMPEPPGWTSQPWVADLARQAFLLAALAVV-----------ALGVVRPILN 483

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
                     G   LSP   +  V  G   +D  A   + Q   + +    +R      +
Sbjct: 484 RVLLPAPAAAGALPLSPGEAAVEVGEGETLDDVRARLKARQGALTKNMLDAARS----HE 539

Query: 526 QSDLRLLHMIEINEERFAKILRKWARSEIED 556
           +  L +  ++E +  R A   R+   SE++ 
Sbjct: 540 EQILVIRKLVEEDSGRIATTFRQMIASELDT 570


>gi|225871927|ref|YP_002753381.1| flagellar M-ring protein FliF [Acidobacterium capsulatum ATCC
           51196]
 gi|225792578|gb|ACO32668.1| flagellar M-ring protein FliF [Acidobacterium capsulatum ATCC
           51196]
          Length = 534

 Score =  313 bits (801), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 116/518 (22%), Positives = 224/518 (43%), Gaps = 39/518 (7%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
            ++     +  LY  L   D   ++  L+ A I F +S +G+++ VP+  + KAR+ + A
Sbjct: 52  FWYGTRTDWRTLYAGLNPDDARTMAGQLTTAGIPFEVSPDGTALEVPAPDLDKARLTVTA 111

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
            G PSS    G+ LFDK N  G + F +++   RALEGE+ +TI ++  + ++RV++VMP
Sbjct: 112 GGGPSSGR-MGFALFDKPNWVG-SDFDEQVNYQRALEGELEQTIDTLEDVRSSRVNLVMP 169

Query: 160 DMGSFRKIGARPTASVMIRAI-NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
               F        ASV++R        + A+AIR+LVAAAV  L   +V ++ + G+   
Sbjct: 170 HDSLFTSEQRAAKASVVLRLKHRTLSEEEAQAIRNLVAAAVDGLTPANVVLVSANGE--- 226

Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
             +        +L + Q  +  +   +   L    G+ N  +AV  + +  T    + +Y
Sbjct: 227 --DQFGAHGQNALELAQ--EQALTQQVIGTLQPVAGLGNVHAAVHMDFDTATTSETDEIY 282

Query: 279 DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVP---LPRSLENTDKKEEQ 335
           +P+     S++ S  +  S+            N P+ +    P    P++    + +EE 
Sbjct: 283 NPNQTATLSMQRSTQSTGSQ-PVAAGVPGAASNAPNSNATGKPPLYPPQATGQQNSQEES 341

Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395
           S Y ++ K         KL RL++AVV+N+  + +   +   Q +  + +  + ++V AA
Sbjct: 342 STYGVSKKIEHRAQGPGKLNRLTVAVVLNEPWVMQGK-KKVWQPRSAAEMQRLTQLVQAA 400

Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455
            G N  RGD +T+  M F            +S  + +          L      L +  +
Sbjct: 401 VGYNQARGDIVTVEQMPF-----DTGSDTPLSLQERVQSWMRMASPLLRPAALLLGILLV 455

Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL 515
            L   R +      K     GK++ +   + + +            D++ + +    +  
Sbjct: 456 VLMVFRPML-----KAASSSGKALPAGVSVKAVIG-----------DTTAEGLAELPQAD 499

Query: 516 QSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
           + ++ +    +   R+   +     + A++L+ W  SE
Sbjct: 500 RQQLQAQAIYE---RVAERVNKEPAQSARLLQSWIHSE 534


>gi|170737019|ref|YP_001778279.1| flagellar M-ring protein FliF [Burkholderia cenocepacia MC0-3]
 gi|169819207|gb|ACA93789.1| flagellar M-ring protein FliF [Burkholderia cenocepacia MC0-3]
          Length = 548

 Score =  312 bits (800), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 116/540 (21%), Positives = 223/540 (41%), Gaps = 30/540 (5%)

Query: 22  ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81
            L    ++ + +              Y  L+   E      +  AL    I +RI  +  
Sbjct: 33  KLAPIVILAISLAALTMMLMHRQDSRYKPLFGSQEAVVAADMMAALDAEGIPYRIHPDSG 92

Query: 82  SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
            + VP   +G AR+ LAA+G+       G E  DK +  G++ F+Q++   R LEGE+ +
Sbjct: 93  QVLVPEQKLGAARMMLAAKGVV-GKLPEGLEQVDKSDPLGVSQFVQDVRFRRGLEGELTQ 151

Query: 142 TIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRAINPSVY--KSAEAIRHLVAAA 198
           +I ++  + +ARVH+ +    SF    G + +ASV++          +   AI  LVA +
Sbjct: 152 SIMALEPVSSARVHLSIAKSASFILADGDKSSASVVLTLKPNRKLNKEQIAAIVALVAGS 211

Query: 199 VPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDN 257
           V NLD   VTV+D +G  L+A  ++          +   ++ ++  NI + L   LG  N
Sbjct: 212 VANLDPARVTVIDQSGNHLSAQIDLVLGNSTLDSELGAQMREQVLRNIRELLTPVLGDGN 271

Query: 258 FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPH-VS 316
           FR++V  EL+ D  +     Y        + +++++A R E    ++A+ V  ++ +  +
Sbjct: 272 FRASVAVELDHDRVEETREQYG------EAPKVTQEAIRDEKDIGQAALGVPGSLSNRPA 325

Query: 317 DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA 376
                      ++ K  +   Y  +   +       +++RL++AVV+N            
Sbjct: 326 PPSTASMPEAPHSAKNAQTRQYAYDRNVVQIKRSPVRVKRLNVAVVLNNAAAPG-----G 380

Query: 377 DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHF 436
            +    + LA+++ I+    GI++ R D +T++S+DF    +  S   Q  +      + 
Sbjct: 381 GKAWAPAQLAQVDTILRDGLGIDADRDDALTVSSLDFRGTPVTES---QPWWKQ--PDNL 435

Query: 437 ATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPN 496
            T+     + +G LL        L ++  I         G         ++       P 
Sbjct: 436 VTIGTWAAWALGALLGFVFIFRPLLKVLRIW------ANGGRDPLSQGANAVSGGPEAPA 489

Query: 497 DNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIED 556
              A D+  Q +     NL    +      + L+  H+   + ER A++++ W R +   
Sbjct: 490 LAAAADADTQPLLLADANLPPIGSGADVLIAHLK--HLAAQDPERVAEVIKPWIRDDEHT 547


>gi|89069804|ref|ZP_01157139.1| putative flagellar M-ring protein [Oceanicola granulosus HTCC2516]
 gi|89044605|gb|EAR50721.1| putative flagellar M-ring protein [Oceanicola granulosus HTCC2516]
          Length = 514

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 126/527 (23%), Positives = 221/527 (41%), Gaps = 23/527 (4%)

Query: 30  LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSM 89
           +V ++  +       +     LY  L+ +    +  AL      + +   GS I V S+ 
Sbjct: 1   MVVVLAVLFVGRSTPTRQMALLYAGLDAAAAGEVVTALDTRGEVYEVR--GSGIYVESAR 58

Query: 90  VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149
               R+ LA +GLPS  +  GYEL D ++ FG TS M +    RA EGE+ARTIQS  G+
Sbjct: 59  RDLLRMTLAGEGLPSGGAQ-GYELLDSLSGFGTTSQMFDAAYWRAKEGELARTIQSSPGV 117

Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209
            A RVH+ +P    F++ G    A  +  A        A+A RHLVA+AV  L   DV V
Sbjct: 118 RAVRVHVSVPANRGFQREGQPAAAVTVTSAGGGLSAAQAKAFRHLVASAVTGLAPDDVAV 177

Query: 210 LDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
           +D +G +             + +     +  +   + + L A +G  N    +  E   +
Sbjct: 178 IDESGLV------AAADDSSAPAAQGERERLMRERLQRLLEARVGHGNAVVELNIETETE 231

Query: 270 TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT 329
           T+QIRE  +DP+ +V  +  +S+ ++ +       AVTV  N+P   D       S    
Sbjct: 232 TEQIRERQFDPEGRVAIAEDVSERSESASGGT--GAVTVASNLP---DGDAAGGGSESQA 286

Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEIN 389
            +  + +NYE++            + R+++AV++N     +  G      + +  LA + 
Sbjct: 287 SETRQLTNYEVSQVEREVLRAPGAVRRITVAVLINDPVEVDS-GVETATPRSEEELAVLR 345

Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGT 449
            +V++A G +  RGD IT+ SM F    +  +  + V+  +        V+  +   V  
Sbjct: 346 DLVASAVGFDEARGDVITLRSMPFEPPAVAGTEALDVAAPEPP----LDVMWLVQLAVMA 401

Query: 450 LLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
           ++   LGL  +R  L     A   E G    L+  P +          +  A + +   +
Sbjct: 402 VVALVLGLFVIRPILTGARPAALPERGPPPALTMEPSARGEPGLPALRETQAGEVAMSQL 461

Query: 509 FS---HSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
            +      +         +     RL  +++  ++   +IL+ W   
Sbjct: 462 PTFDMAEFDRAPPQEDLSTLDPVSRLRRLMDERQDETLQILQSWMEE 508


>gi|258514003|ref|YP_003190225.1| flagellar MS-ring protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257777708|gb|ACV61602.1| flagellar M-ring protein FliF [Desulfotomaculum acetoxidans DSM
           771]
          Length = 512

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 115/559 (20%), Positives = 224/559 (40%), Gaps = 62/559 (11%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +LD+L Q ++S + + +  ++I  + IL   +  +    F+    Y  L   LE  D   
Sbjct: 6   LLDRLKQRWQSLSQVKKAFVIIAGTGILAATLYLIT---FLTQTSYTPLMTNLEPRDAGA 62

Query: 63  ISVALSEANI-DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           I   L      DF+++D G++I VP   V + RI LA+ G+       G+ELFD+    G
Sbjct: 63  IEEKLKSLKYEDFKLADQGTTIMVPKEQVYEIRIKLASSGVLQGGG-LGFELFDQNQ-MG 120

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV--MIRA 179
           ++ F Q++   RAL+ E+ RTI  +  +  ARVH+V+P    F       + S+   ++ 
Sbjct: 121 VSDFEQQVDYQRALQEELRRTIIQLEEVEQARVHLVLPQKSVFVDEQEPASVSIALKLKP 180

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA------NEMERNILGKSLSI 233
           +     +  + I  L   ++  L + +V ++D  G +L+       +E    ++ K   +
Sbjct: 181 LAKLKPEQVKGIADLAVGSIQGLKLENVHIIDMQGHILSDTIDTENDEDSSQVINKQQQV 240

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293
            +  + E+E  I   L   LG D   S V AE++ + Q+I    + P  KV   +   K 
Sbjct: 241 RREYEKELEKRIQNVLDRVLGTDKAVSMVTAEMDFNKQEINTTTHGPGQKVSEQLINEKS 300

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
                     +     Q  P  +D        +E+  + E  +NY+++T           
Sbjct: 301 QGTGLGGVTGTDAQNTQTYPTGTDN-------VESASRDESITNYQVDTTQQKVVQPPGT 353

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           +++LS +VVV+                  + + +I  +VS A G +  RGD I +T++ F
Sbjct: 354 IKKLSTSVVVDGK-------------LSATRIQQIESLVSTAIGYDQARGDQINVTNIAF 400

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
            +    +    ++   + L+            + G ++   +    +  +      ++ +
Sbjct: 401 -DTSYQDKMQAEMGKEETLAAQKQRQQLIYFAIAGAVIFLIMSAFLIAYMRRRRRQQQED 459

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
              +SI                        S QD+    + L+ +       Q    +  
Sbjct: 460 TLEESI-----------------------KSVQDLIEEEQELEVKYIDVKHDQ----IKK 492

Query: 534 MIEINEERFAKILRKWARS 552
           + +   +  A+IL+ W   
Sbjct: 493 LAKERPQDIAEILKIWLSE 511


>gi|254519422|ref|ZP_05131478.1| flagellar MS-ring protein [Clostridium sp. 7_2_43FAA]
 gi|226913171|gb|EEH98372.1| flagellar MS-ring protein [Clostridium sp. 7_2_43FAA]
          Length = 523

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 120/567 (21%), Positives = 244/567 (43%), Gaps = 58/567 (10%)

Query: 1   MAILDQLLQ----FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLE 56
           M ++D+L +     +    S  +   + + + ++  I+   +  F+ ++  Y  L+  L+
Sbjct: 1   MLLMDKLKESFSKLWGKFKSFSKGIRIAIIAALVTFIIAIGSLFFYNSANKYKVLFSNLD 60

Query: 57  VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
            SD   ++  L E  +D +I   G +I VP + V + R+ LA +    S  + GYEL D 
Sbjct: 61  ASDAQLVTNKLKEKKVDMKIE--GETIMVPKASVDELRLELAPE---LSDGSKGYELMDT 115

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
            NSFG+T    ++ ++R  +GE+ +TI+S   I   RVHI       F +      A+V 
Sbjct: 116 GNSFGMTDEEFKLKKLRMQQGELEKTIKSFPQIDTVRVHITPSKDSVFVEDKEPGKAAVY 175

Query: 177 IRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-------EMERNIL 227
           ++ +  +    +  E+I  LV+ +  N+   ++ V+D    LLT +       E+    +
Sbjct: 176 LKLLPGNKLGKEQVESIVALVSGSTENVPKENIEVIDDNMNLLTKDLNNSDGTEVSSETI 235

Query: 228 GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS 287
            K  ++ +  + +I+ +I   L   +G +  +S+V  +L+ D++Q  E + DP+ KV  S
Sbjct: 236 EKQFNLEKKYEEDIQKSIIDLLEPVVGKNKVKSSVNVDLDFDSKQKTETIIDPN-KVIVS 294

Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
            +  K+     T +      V+ NM +  D       +   + ++E  +NYE       T
Sbjct: 295 QQTIKEKNGINTGENSGGP-VDNNMGNTIDEGT----TGNGSSREEVNTNYESGKTETKT 349

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
                +++RL+ +V ++      V              A I K V+ A G+N+ RGD+++
Sbjct: 350 ISAPGEVKRLTASVFIDGNIDGNVQ-------------AAIEKSVANAIGLNTERGDSVS 396

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           +  M F       +     S  ++L++     +     L    L+  + +  L R  + +
Sbjct: 397 VVGMTFDPITKEEAQKEFDSINELLAKENRNKMIIYSVLGLLGLIIIVVILILVRRKSKN 456

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
           + ++ E     ++     +    T +MP+ N             S N ++ I + + K +
Sbjct: 457 NQEEKENLLDVVIDDRLSNE--NTEVMPSINF-----------ESINPKAHIENEIKKYA 503

Query: 528 DLRLLHMIEINEERFAKILRKWARSEI 554
             +         ++ A I++ W     
Sbjct: 504 TDK--------PDQVADIVKSWLAENE 522


>gi|157147120|ref|YP_001454439.1| flagellar MS-ring protein [Citrobacter koseri ATCC BAA-895]
 gi|157084325|gb|ABV14003.1| hypothetical protein CKO_02897 [Citrobacter koseri ATCC BAA-895]
          Length = 540

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 124/550 (22%), Positives = 227/550 (41%), Gaps = 41/550 (7%)

Query: 25  LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSIS 84
           +A V  V +   +    +  +  Y  LY   E   V+++   L   NI +RI+ +   I 
Sbjct: 1   MAIVGGVVLAAAIILSLWNRNQGYVALYGSQEHLPVSQVVDVLGAENIAYRINPDNGQIL 60

Query: 85  VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144
           V  S + +AR+ LAA+G+ S+++  GYEL DK    G + F+Q +   R+LEGE+A++I 
Sbjct: 61  VSESKLPQARMALAAKGI-SAATPDGYELMDKEEMLGSSQFIQNVRYKRSLEGELAKSIM 119

Query: 145 SISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAINPSVY--KSAEAIRHLVAAAVPN 201
           ++  +  ARVH+ + +  SF        +ASVM++         +   ++  LVA +VP 
Sbjct: 120 ALDPVENARVHLGLNESSSFVLTNKPTSSASVMVQLHYGRKLDEQQVASVIQLVAGSVPG 179

Query: 202 LDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDN 257
           +  G V V+D +G LL+      +           ++Q I+ +   NI   L + +G  N
Sbjct: 180 MQPGAVRVVDQSGNLLSDGIEGPDGGMTSKRMGDDVMQRIREDTTKNITSLLTSLVGPGN 239

Query: 258 FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSD 317
           FR +V   +++   +  +     D +V       ++           +++     P    
Sbjct: 240 FRISVAPTVDLSRVEETQERLGKDPRVSDEQLSQENTTNEMAFGIPGSLSNRPVNPTPQT 299

Query: 318 RKVPLPRSLEN---------------TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
              P   +                  + + +EQ  Y  +       H  YKLE+LS+AVV
Sbjct: 300 PANPAEGNPPAENAANAANNTDPRSLSSRSQEQRKYAFDRDIRHIRHPGYKLEKLSVAVV 359

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           +N+          A        L  + ++V +A GI   RGD +T+  + F         
Sbjct: 360 LNQ-------AAPALAKITPEQLTSMTRLVESAAGIEKARGDALTLDVLTFTAPADDVMP 412

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482
            +   + D   +++    N  + L+  L + F     ++R    D         K  L  
Sbjct: 413 DL-KWWQDPSMQYWGQ--NGGIGLLALLTLLFGVRPLVQRFGRRDPITLDGEATKKELEA 469

Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542
           P     +      + + A  ++N+D+         + +   +K   L+LL   E   ER 
Sbjct: 470 PDNGVVMNDDEFASLSKAAFNNNEDLLPP------QSSGLEAKVEFLQLLAQSET--ERV 521

Query: 543 AKILRKWARS 552
           A++L++W  S
Sbjct: 522 AEVLKQWINS 531


>gi|28211331|ref|NP_782275.1| flagellar MS-ring protein [Clostridium tetani E88]
 gi|28203771|gb|AAO36212.1| flagellar M-ring protein fliF [Clostridium tetani E88]
          Length = 521

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 108/563 (19%), Positives = 226/563 (40%), Gaps = 55/563 (9%)

Query: 4   LDQLLQFFKSGTSLGRTRIL----ILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           +++L Q+F +     +           ++ +  I   ++   +++ P Y  L+  +E  D
Sbjct: 1   MNKLSQWFNTLKDKIKDLSKKKKIAYGAIAVGIIGALISGIVYISKPKYAILFSNMEQED 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
           +  +   L ++  +F++  +G++I VP   V   R+ + +Q +P  + ++G+EL DK N 
Sbjct: 61  MGTVYNKLKDSKENFKV--DGNTILVPREKVDSLRMEVMSQ-VPIKNGSNGFELLDK-NK 116

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-- 177
           FG T    +I   RAL+GEI RTI+    I  ARVH+VMP+   F K      AS+ +  
Sbjct: 117 FGATEEEMKINYQRALQGEIERTIKGFPEIENARVHLVMPEDSVFIKDDTPAKASITLKI 176

Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTG----KLLTANEMERN-ILGKSLS 232
           +          +AI  L + +V NL   +V + D+       L   +E + +  + K  +
Sbjct: 177 KPYKKITDNQVKAIVALASGSVKNLPKENVEINDTNQILTKDLFKEDEFDSSESIQKQQA 236

Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292
           + +  +  +E  +   L A  G +  +  + A+LN D  Q    +YDP + V  S +  K
Sbjct: 237 LKKEYEKTLEDKVTSMLEAVYGKERAKIKINADLNFDAIQDESTIYDPKNVVV-SEKNVK 295

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
           +              V+ NM + +               +E   NYE++ +   T     
Sbjct: 296 ETTPGGNDLATGGSPVDDNMRNRAGNNEKDALVT----HEENVRNYEVSERKNKTLRAPG 351

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
            + RL+++VV++                 ++    +   V +A G N +RGDTI++  + 
Sbjct: 352 SVRRLTVSVVLDGN-------------LDNATRNAVQNTVKSAVGYNEQRGDTISVEGLP 398

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F           + +  + L+R     +  ++  +G L +  +    +++  N +D +  
Sbjct: 399 FDTAYRERIEKDKEAMEEELARDKKMNLYKILAALGVLALGIIIGILVKKRRNKEDNELD 458

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR-L 531
                                + N+ + +   ++      +    ++          R +
Sbjct: 459 ---------------------LINEGLDVVIDDEITEEKPKFKPIQLEEESEGAYIEREI 497

Query: 532 LHMIEINEERFAKILRKWARSEI 554
                   ++  +I++ W   + 
Sbjct: 498 RKYATEKPDQVIEIVKAWLAEDE 520


>gi|163789650|ref|ZP_02184088.1| flagellar M-ring protein fliF [Carnobacterium sp. AT7]
 gi|159875182|gb|EDP69248.1| flagellar M-ring protein fliF [Carnobacterium sp. AT7]
          Length = 524

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 119/568 (20%), Positives = 244/568 (42%), Gaps = 62/568 (10%)

Query: 4   LDQLLQFF----KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           +D + + +       T+LG+++ + L  V+   I +  A  ++     Y  L+  LE +D
Sbjct: 1   MDGIKKIWTGIKDGWTNLGKSKRIGLVMVLFFVISIVTAMTYYTQKVEYATLFSNLEEAD 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I   +    ID+++ DNG++I +  + V   RI LA   L   S+ +G+E+FD+  S
Sbjct: 61  AGTIVNDIKTKGIDYKLEDNGTTILIDQAQVDAYRIELAVNDLLPKST-TGFEIFDET-S 118

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI--GARPTASVMI 177
              T   ++I   RA+ GE+ R+I ++  I  A+V + +P+   F      ++ +ASV++
Sbjct: 119 MMATDEDRKIMYQRAVTGELERSISALDSIEEAKVMLSLPEDSVFTSEENQSKASASVVL 178

Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME------RNILGK 229
             ++ S     + + I  L++ AV NL   ++ ++D+ G LL+    +       +++ K
Sbjct: 179 TPLSGSQIPANAVQGIASLISGAVDNLPKENIKIVDTAGNLLSVALEDEVNLNATDLVSK 238

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
             +I  + + ++E  + + L    G+D    AV A++N D+ +   I Y      + S+R
Sbjct: 239 YQAITNSYEQQLEQKLLQTLGPIYGIDKLTVAVNADMNFDSSESEIINYG-----DSSVR 293

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
               +   +T   E     +  +  V+  +     +       +  +NYE+N+++  T  
Sbjct: 294 SETVSAGGKTIGVEEGEGFDNAINQVTSGEEGGNSTY------DRTTNYELNSETTNTIK 347

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
              ++ERLS +V+ +                  +    +  IV+A  G  + R D I+I 
Sbjct: 348 APGEVERLSTSVIFDGN-------------LSPADKESLEAIVAATVGTVAEREDVISIQ 394

Query: 410 SMDFLENQLFNSGTVQV----SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465
            +DF  +      T       S  D L R++  ++  LV L+  +++  + L        
Sbjct: 395 GIDFATSTEVVEPTAPEQLKSSIRDTLLRYWPYLVGGLVLLIVMIVLLRMLLR------- 447

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
             + K  E+       P PI        +        +  Q       +L+  +N  +S+
Sbjct: 448 --NRKDDELDFFDEEEPEPI--------VQPMRPVQPTDEQKKAKEKADLKRELNKNMSE 497

Query: 526 QSDLRLLHMIEINEERFAKILRKWARSE 553
           +    +    + + E  A +++ W + E
Sbjct: 498 KETT-VREYAKESPEGAADLIKIWMKDE 524


>gi|283856295|ref|YP_162369.2| flagellar M-ring protein FliF [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|283775291|gb|AAV89258.2| flagellar M-ring protein FliF [Zymomonas mobilis subsp. mobilis
           ZM4]
          Length = 619

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 118/609 (19%), Positives = 232/609 (38%), Gaps = 81/609 (13%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++++ +  K        +  +    ++    +     F +++P   +LY     +D   I
Sbjct: 34  VNKVYERVKDFVQQPAIKRSLPLMGLISLTAIGALIWFLLSAPPQRDLYPGAGDADRASI 93

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           + AL    I + I+     I+V      KAR+ LA QGLP S+ +  +         G +
Sbjct: 94  ASALETGGIHYNINRGNGVITVSEKDYYKARMLLAQQGLPKSAPDGDH--VISSLPLGAS 151

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
             ++      A E ++ARTI++I  +  ARVHI  P    F +     TASVM++ +   
Sbjct: 152 RAVEGERLRAAREVDLARTIETIDVVNQARVHIAEPQPSPFVREQVHGTASVMLKLMTGR 211

Query: 184 VYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQAIQHE 240
                  +AI++LVAA+VP +    V+V+D  G LL+A +  + +I  + L + Q ++  
Sbjct: 212 NLSNAQVQAIQNLVAASVPGMAPEAVSVVDQAGHLLSATSNADNDINDRQLRLQQTVEAR 271

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               +NK L   LG +N+ + V  +L+    Q     Y P     RS   S +       
Sbjct: 272 YMDALNKLLVPLLGENNYTAEVHTDLDFTESQATRESY-PKEGSLRSESGSWNKDGGPD- 329

Query: 301 QPESAVTVEQNMPHVSDRKV---------------------------------------- 320
           Q         NMP                                               
Sbjct: 330 QNGGIPGAMSNMPPTPANPTQNPPPNLQPPAQPNNQQNAQNGQQGQNAQGQPNGQNAQQG 389

Query: 321 ---------PLPRSLENTDKKEEQSN--YEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369
                    P   + +   +  E  N  YE+  +     +    ++R+S+A+ + +    
Sbjct: 390 QNARAPGSVPAETAQQAQARTSENFNRYYELGREVSVIRNPTGSVKRVSVAIALRQINHG 449

Query: 370 EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFM 429
                   +      +A++ K++  A G ++ RGD + I+S DF+   +F+    Q S++
Sbjct: 450 --------KPPSPEQVAQLEKLIKGAIGFDASRGDVVAISSSDFMGGSVFSMPWYQNSWV 501

Query: 430 DILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAV 489
            +L+R+ +        LV  L++       L+      + ++        L    I + +
Sbjct: 502 PLLARNLS------ALLVAALVIFGFARPFLKARAEAAERRRLAENPLPQLEQTNIDNLI 555

Query: 490 TTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549
             G  P +     +   D+   +   ++R++          + H ++ +  R A ++   
Sbjct: 556 AEGEEPAEEAGSQAITLDMIDAAPGYKARVDL---------VRHFVKQDPARAALVVHDM 606

Query: 550 ARSEIEDRY 558
            RS+++   
Sbjct: 607 MRSDLKSLE 615


>gi|168187560|ref|ZP_02622195.1| flagellar M-ring protein FliF [Clostridium botulinum C str. Eklund]
 gi|169294591|gb|EDS76724.1| flagellar M-ring protein FliF [Clostridium botulinum C str. Eklund]
          Length = 522

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 123/565 (21%), Positives = 223/565 (39%), Gaps = 58/565 (10%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            I ++          L + + +  + +++  I   +    F+N+  Y  LY  ++ +D  
Sbjct: 3   KIKEKFKNLIDKFKGLTKGKKIAFSVLVVGIISGLIYLIVFLNTTKYAVLYKDMDPNDAQ 62

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            +   L+E  +++++    SSI VP   V + R+ LA Q     S + GYE+ +  +SFG
Sbjct: 63  TVMNKLNEKKVEYKVES--SSIKVPEDKVSELRLELAPQ---LKSGSKGYEILENADSFG 117

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           +T   +E+    ALEGE+A+ I+S+  +  ++V +VMP  G+F K      ASV I    
Sbjct: 118 MTDKERELNYKIALEGELAKNIKSLPEVKDSKVLLVMPQEGNFFKQAENAQASVRIEFNE 177

Query: 182 PS--VYKSAEAIRHLVAAAVPNLDMGDVTVL--------DSTGKLLTANEMER--NILGK 229
                 +  +AI  LV  +V NL   +V V+        D T  L    + +    +  K
Sbjct: 178 GKSISKEQIKAIISLVTGSVKNLKKENVKVIGVVNGQTKDLTEDLFGDEDGKDLTTVTDK 237

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
                + ++ E    I   L    G    ++AV  +L+ D  +    V+DP++ V RS  
Sbjct: 238 QNKYKKNLEKEYVKKIMNILTPKYGEG-VKAAVNVDLDFDASEKTSTVWDPNN-VVRSEE 295

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
             KD   S+  +  SA  V+ NM +  + +     S      ++   NYE+      T  
Sbjct: 296 TEKDTDTSKGGKV-SAGPVDNNMSNTYNNQDGNGSST----HEKTTKNYEVGKIEQKTVG 350

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
              K++++S +V +N            D+        +IN +V+ A   +  RGD IT+ 
Sbjct: 351 APGKIKKVSTSVTIN------------DENLSPVDKDKINSLVAGAISYDENRGDIITVE 398

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
            + F E     +        +         I   +      L+   G+ A  R      A
Sbjct: 399 GLKFNEINDAKAEEDAKKQAEEKKAKQKAFIYKCIGGAIVTLLLIAGVIAFIRKRKKKKA 458

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
              E+ G ++L               +D I      Q I     N  + I   + K +  
Sbjct: 459 NNEEIEGINMLI--------------DDEIDPKEELQPINFDEENENTHIEKEIKKYASE 504

Query: 530 RLLHMIEINEERFAKILRKWARSEI 554
           +         ++  +I++ W   + 
Sbjct: 505 K--------PDQVVEIIKAWMAEDE 521


>gi|146309431|ref|YP_001189896.1| flagellar MS-ring protein [Pseudomonas mendocina ymp]
 gi|145577632|gb|ABP87164.1| flagellar M-ring protein FliF [Pseudomonas mendocina ymp]
          Length = 559

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 117/567 (20%), Positives = 226/567 (39%), Gaps = 25/567 (4%)

Query: 3   ILDQLLQFF-KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           +L  L     + G  L     L+  ++I   + + +    + +   +  LY   E     
Sbjct: 1   MLQTLKSKLPEGGLKLDPRLSLVGLALIAALLAVGVVFYLWRDQGSFRPLYGTGEAYPAA 60

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            +   L    I +R+      + V    +G+AR+ LAA+G+      +GYELFDK    G
Sbjct: 61  EVMQVLDGDAISYRLHPQSGQVLVREDQLGRARMLLAAKGV-QVKVPAGYELFDKDEPLG 119

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARP-TASVMIRAI 180
            + F+Q++   R+LEGE+ART+ ++ G+  ARVH+ + +  SF      P  ASVM++  
Sbjct: 120 TSQFVQDVRLKRSLEGELARTVMALKGVEGARVHLALQESSSFVVGKREPGKASVMLQLA 179

Query: 181 NP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQ 238
                  +   AI +LVA +VP LD  +V V+D  G LL+          ++  +V   Q
Sbjct: 180 PGYKLAPEQVSAIVNLVAGSVPQLDAANVQVVDQYGALLSRGIDTLGGPVQNWQVVDDYQ 239

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
           ++   N    LA  LG  N+R +V A+++   ++     Y    ++   +   +      
Sbjct: 240 NKAVANAEAVLAPVLGNGNYRISVAADIDFSQKEETFQAYGETPRLRNEVLRDESVLDQL 299

Query: 299 TSQPES--AVTVEQNMPHVSDRKVPLPRSLEN----TDKKEEQSNYEINTKSIATTHDNY 352
                   A    Q  P   + + P      N    + +KE     + +       H  +
Sbjct: 300 ALGVPGSLANRPPQPAPEPVEGQPPAEGEAANKAATSLRKESNRQLDYDQSVTHVKHAPF 359

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
            L + SIAVV+N          + + G      AE+  +V +A G N  RGD +T++   
Sbjct: 360 SLRQQSIAVVLN-------AAAAPEGGWTAEARAELEAMVKSAVGFNQARGDLLTLSVFP 412

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR---LHNIDDA 469
           F       +    + + + +  H   +    VF + +LL+  + +    R     +    
Sbjct: 413 FTAAGADAAQGEALPWWENVKVH--ELARLGVFALISLLLLLMVVRPAVRSLTQRSQPGV 470

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
                G + +      ++      + ++        +        L +  +    +   L
Sbjct: 471 AAAVQGDEQLALHAERTAERLLARVGDEPPGATVLGELSPLSEIRLPAPGSGLELQIEHL 530

Query: 530 RLLHMIEINEERFAKILRKWARSEIED 556
           ++  + + + ER ++++++W      D
Sbjct: 531 QM--LAKNDPERVSEVIKQWIGRNERD 555


>gi|260752868|ref|YP_003225761.1| flagellar M-ring protein FliF [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258552231|gb|ACV75177.1| flagellar M-ring protein FliF [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 619

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 117/609 (19%), Positives = 232/609 (38%), Gaps = 81/609 (13%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++++ +  K        +  +    ++    +     F +++P   +LY     +D   I
Sbjct: 34  VNKVYERVKDFVQQPAIKRSLPLMGLISLTAIGALIWFLLSAPPQRDLYPGAGDADRASI 93

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           + AL    I + I+     I+V      KAR+ LA QGLP S+ +  +         G +
Sbjct: 94  ASALETGGIHYNINRGNGVITVSEKDYYKARMLLAQQGLPKSAPDGDH--VISSLPLGAS 151

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
             ++      A E ++ARTI++I  +  ARVHI  P    F +     TASVM++ +   
Sbjct: 152 RAVEGERLRAAREVDLARTIETIDVVNQARVHIAEPQPSPFVREQVHGTASVMLKLMTGR 211

Query: 184 VYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQAIQHE 240
                  +AI++LVAA+VP +    V+V+D  G LL+A +  + +I  + L + Q ++  
Sbjct: 212 NLSNAQVQAIQNLVAASVPGMAPEAVSVVDQAGHLLSATSNADNDINDRQLRLQQTVEAR 271

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               +NK L   LG +N+ + V  +L+    Q     Y P     RS   S +       
Sbjct: 272 YMDALNKLLVPLLGENNYTAEVHTDLDFTESQATRESY-PKEGSLRSESGSWNKDGGPD- 329

Query: 301 QPESAVTVEQNMPHVSDRKV---------------------------------------- 320
           Q         NMP                                               
Sbjct: 330 QNGGIPGAMSNMPPTPANPTQNPPPNLQPPAQPNNQQNAQNGQQGQNAQGQPNGQNAQQG 389

Query: 321 ---------PLPRSLENTDKKEEQSN--YEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369
                    P   + +   +  E  N  YE+  +     +    ++R+++A+ + +    
Sbjct: 390 QNARAPGSVPAETAQQAQARTSENFNRYYELGREVSVIRNPTGSVKRVTVAIALRQINHG 449

Query: 370 EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFM 429
                   +      +A++ K++  A G ++ RGD + I+S DF+   +F+    Q S++
Sbjct: 450 --------KPPSPEQVAQLEKLIKGAIGFDASRGDVVAISSSDFMGGSVFSMPWYQNSWV 501

Query: 430 DILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAV 489
            +L+R+ +        LV  L++       L+      + ++        L    I + +
Sbjct: 502 PLLARNLS------ALLVAALVIFGFARPFLKARAEAAERRRLAENPLPQLEQTNIDNLI 555

Query: 490 TTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549
             G  P +     +   D+   +   ++R++          + H ++ +  R A ++   
Sbjct: 556 AEGEEPAEEAGSQAITLDMIDAAPGYKARVDL---------VRHFVKQDPARAALVVHDM 606

Query: 550 ARSEIEDRY 558
            RS+++   
Sbjct: 607 MRSDLKSLE 615


>gi|313901521|ref|ZP_07834968.1| flagellar M-ring protein FliF [Thermaerobacter subterraneus DSM
           13965]
 gi|313468216|gb|EFR63683.1| flagellar M-ring protein FliF [Thermaerobacter subterraneus DSM
           13965]
          Length = 551

 Score =  310 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 124/523 (23%), Positives = 213/523 (40%), Gaps = 37/523 (7%)

Query: 44  NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP 103
           + P +  L+ +L+ +D   I+  L E  I F+++  G +I VP+  V + R+ LAAQGLP
Sbjct: 48  SGPQWAPLFTQLDPTDAAAIAGQLEEQGIPFQLAQGGQAILVPAEQVDRLRLDLAAQGLP 107

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
              +  G EL +     G T F +++  +R L+GE+ARTI  + G+ AARVH+V P+   
Sbjct: 108 RQGT-VGLELLE-NMPMGATEFERQVQYLRGLQGELARTIGRLEGVEAARVHVVRPERSP 165

Query: 164 FRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN- 220
           F       TA+V+++    +    +   +I HLVA+AV  L   DVTV+D+TG+LL+A  
Sbjct: 166 FVSQQRPATAAVLVQLKPGAELEPEQVRSIMHLVASAVEGLKPEDVTVVDTTGRLLSAGV 225

Query: 221 ----EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
               E    + G    + +  + E++ ++   L   LG  N  + V AELN D Q +   
Sbjct: 226 ELAQEGTAVVPGDRFEVERRFEAELQRSLQTLLEQVLGPGNVIARVNAELNFDQQVVERH 285

Query: 277 VYDPD----SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332
           +++P       + RSI+  ++    + +     V  + N+P        +     +  + 
Sbjct: 286 LFEPPADGGQGILRSIQELQETFTGQPA--PGGVPGDSNIPTY----PQVGGGTLDYQRS 339

Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV 392
           E  +NYE+N            + RLS+AVVVN     E                      
Sbjct: 340 ERTANYEVNQVVDRVQVAPGAVRRLSVAVVVNGDLTPERRQALQQAVAAA---------- 389

Query: 393 SAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452
               G + +R D + + +M F  +        Q    +  +R     +  L    G  L+
Sbjct: 390 ---IGSDPQRQDQVEVVAMPF--DTTVADRLQQSLEEERQAREATRRVALLAGAGGLALL 444

Query: 453 TFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS 512
             + L A  R   +             L   P S+A T    P                 
Sbjct: 445 ALVLLVAAWRRRRLARRLLEAQAAGHGLPAVPGSTAGTVAAGPAGRGTAAVPGPGGPVPG 504

Query: 513 RNLQSRINSYVSKQS---DLRLLHMIEINEERFAKILRKWARS 552
               +   +           ++  +++   E  A+++R W   
Sbjct: 505 PAGAAATGANGKAAEATVLEQVSELVKNQPEHVAQVIRSWLAE 547


>gi|294013069|ref|YP_003546529.1| flagellar M-ring protein FliF [Sphingobium japonicum UT26S]
 gi|292676399|dbj|BAI97917.1| flagellar M-ring protein FliF [Sphingobium japonicum UT26S]
          Length = 583

 Score =  310 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 116/575 (20%), Positives = 240/575 (41%), Gaps = 63/575 (10%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +D L   F            +    +L  +    AA   +  P   +L+  L  +D + +
Sbjct: 30  VDALKARFTGFMKQPAVAKSLPLLGLLGVVATAGAAWLALREPPQRDLFRALPDADKSAV 89

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  L +  I +   ++G  ++V      KA++ LAAQGLP S+ + G  + D +   G +
Sbjct: 90  AQVLDQNGIRYDFDNSGG-MTVGEDEYFKAKMMLAAQGLPKSAPD-GNSMIDSL-PMGAS 146

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
             ++      A E ++ARTI++I  + +A+VH+ +     F +  ++P+ASVM+R  +  
Sbjct: 147 RAVEGEKLRSAREMDLARTIEAIDSVESAKVHLAVEPPSVFLRERSKPSASVMLRLASGR 206

Query: 184 VY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEI 241
               +   AI HLVA+++P L+  D++++D  G+LL+ N+       + L++   ++   
Sbjct: 207 SLTDQQVSAIVHLVASSIPELNPEDISLVDQNGRLLSNND-GNAADDRQLAVQTRMEDRY 265

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
             ++   L   LG   F + V AELN   +Q     Y  D    RS + +  +      +
Sbjct: 266 RQSVIALLTPILGAGKFSTEVHAELNFAERQATRETYPQDEARLRSEQGTWASD----PR 321

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTD---------------------------KKEE 334
            + A      +P     + P+  ++  T+                           K EE
Sbjct: 322 GQGAGGEASGIPGALSNQAPVNPTVTQTNPNGQAVAQGTESAQTAAQPGTPGNPLMKTEE 381

Query: 335 QSN--YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV 392
             N  +E+  +   T      ++RLS+AV ++ G           + +    +A +  +V
Sbjct: 382 TFNRSFELGREVSVTKDAVGTVKRLSVAVALDNG--------PDGKPRSAQEIAALEALV 433

Query: 393 SAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452
             A G +  RGD + ++S  F + ++  +   +  ++  L R+ + ++ AL+ + G    
Sbjct: 434 KGAVGFDQARGDVVALSSRSFAKEEVVEAPWYEAQWVSPLVRNVSALLVALLLIFG---- 489

Query: 453 TFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS 512
             +G   L+R      A   ++  +       IS+ +      N + +      D+ S +
Sbjct: 490 --IGRPLLKRRAAAQAAAAEQIAVQGQKIGREISTEIGRQATANPDGSTP-ITLDMISST 546

Query: 513 RNLQSRINSYVSKQSDLRLLHMIEINEERFAKILR 547
            +   R +          + + ++ + +R A ++R
Sbjct: 547 YDYAQRADL---------IRNFVKQDPDRAALVVR 572


>gi|89895735|ref|YP_519222.1| hypothetical protein DSY2989 [Desulfitobacterium hafniense Y51]
 gi|89335183|dbj|BAE84778.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 537

 Score =  310 bits (794), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 117/557 (21%), Positives = 225/557 (40%), Gaps = 34/557 (6%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           I   +L+F+     L R + +I  +  L   +  ++  ++ ++P Y  ++ +L   +   
Sbjct: 8   IKQSILEFWG---KLSRPQKIITVAAPLAVAIALISLLYWASNPSYVAIFTELTDIEAGE 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I+  L E   ++++  NGS+I VP       R+ LA+ GLP  S  S  E  +K    G 
Sbjct: 65  ITSELDELKANYKLGSNGSAILVPEKEAAAIRLKLASAGLPKGSEFSWSESLNKT-RVGE 123

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T   + +     L+ E+  T++++S +  ARVH+ +P+   F +     TA+V +     
Sbjct: 124 TESDRRLRYNLGLQTELEATLKTLSNVKDARVHLNIPEETLFIEQQEATTAAVTLTLKEG 183

Query: 183 S--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK----LLTANEMERNILGKSLSIVQA 236
           S         I +L+AA+V  L + DVT+LDS G     +L+ +     +    + + Q 
Sbjct: 184 SSITEDQIRGIANLLAASVKGLKLEDVTILDSNGNTLSDVLSEDNQPGKMTATQIQLKQL 243

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
            +     ++   L    G         A LN D      + + P + +  S         
Sbjct: 244 TEENTRKSVQSMLDKAFGAGKTIVRTNATLNFDQVTTDTVTHGPGAVLSESHTTENTT-- 301

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
             TS   +A  V+ N+P           S  +++K  +  N++++T           + R
Sbjct: 302 -NTSPGGTAPGVDTNVPGYLAADGTWITS--SSEKTSDTLNHQVDTTQEQRIKSPGDIAR 358

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           LS++V+++   ++          +ID  + +I  IV++A GI+  RGD I + ++ F + 
Sbjct: 359 LSVSVLLDADSISAD--------QIDDQIEKIEAIVASAAGIDRDRGDVIQVAALPFDKT 410

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476
                                T I   V  +  L+  F+      R     DA+  E+G 
Sbjct: 411 GALEQEQALAE--AARKERLRTYIEWGVGALLALVFLFVLFRM--RSKRKQDAESLELGQ 466

Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536
               +  P+  A T  L+     A   +   +    +     I     K+S   +   ++
Sbjct: 467 ----ALQPVPLAATEELLLAQQEAEREAELKLAQQKQKSAEEIQRQKIKES---VDIYVQ 519

Query: 537 INEERFAKILRKWARSE 553
            N +  A++++ W   E
Sbjct: 520 NNPDEVARLVKTWLAEE 536


>gi|307293804|ref|ZP_07573648.1| flagellar M-ring protein FliF [Sphingobium chlorophenolicum L-1]
 gi|306879955|gb|EFN11172.1| flagellar M-ring protein FliF [Sphingobium chlorophenolicum L-1]
          Length = 587

 Score =  310 bits (793), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 118/575 (20%), Positives = 240/575 (41%), Gaps = 63/575 (10%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +D L   F            +    +L  +    AA   +  P   +L+  L  +D + +
Sbjct: 34  VDALKARFTGFMKQPAVAKSLPLLGLLGVVATAGAAWLALREPPQRDLFRALPDADKSAV 93

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  L ++ I +   ++G  ++V      KA++ LAAQGLP S+ + G  + D +   G +
Sbjct: 94  AQVLDQSGIRYDFDNSGG-MTVGEDDYFKAKMMLAAQGLPKSAPD-GNSMIDSL-PMGAS 150

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
             ++      A E ++ARTI++I  + +A+VH+ +     F +  ++P+ASVM+R  +  
Sbjct: 151 RAVEGEKLRSAREMDLARTIEAIDSVESAKVHLAVEPPSVFLRERSKPSASVMLRLASGR 210

Query: 184 VY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEI 241
               +   AI HLVA+++P L+  D++V+D  G+LL+ N+       + L++   ++   
Sbjct: 211 SLTDQQVSAIVHLVASSIPELNPEDISVVDQNGRLLSNND-GNAADDRQLAVQTKMEDRY 269

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
             ++   L   LG   F + V AELN   +Q     Y  D    R+   S  +      +
Sbjct: 270 RQSVIALLTPILGAGKFSTEVHAELNFAERQATRETYPQDEARLRTETGSWQSD----PR 325

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTD---------------------------KKEE 334
            + A      +P     + P+  ++  T+                           K EE
Sbjct: 326 GQGAGGEASGIPGALSNQAPVNPTVTQTNPNGQAVAQGTQSAQTAAQPGTPGNPLMKTEE 385

Query: 335 QSN--YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV 392
             N  +E+  +   T      ++RLS+AV ++ G           + +    +A +  +V
Sbjct: 386 TFNRSFELGREVSVTKDAIGTVKRLSVAVALDNGADG--------KPRTAQEIAALEALV 437

Query: 393 SAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452
             A G +  RGD + ++S  F + ++  +   +  ++  L R+ + ++ AL+ + G    
Sbjct: 438 KGAVGFDQARGDVVALSSRSFAKEEVVEAPWYEAEWVSPLVRNVSALLVALLLIFG---- 493

Query: 453 TFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS 512
             +G   L+R      A   +           IS+ +T     N + +   +  D+ S +
Sbjct: 494 --IGRPLLKRRAAAQAAAAEQTAVVGQKIGREISTEITRQATVNPDGSTPVT-LDMISST 550

Query: 513 RNLQSRINSYVSKQSDLRLLHMIEINEERFAKILR 547
            +   R +          + + ++ + +R A ++R
Sbjct: 551 YDYAQRADL---------IRNFVKQDPDRAALVVR 576


>gi|310816845|ref|YP_003964809.1| flagellar M-ring protein FliF, putative [Ketogulonicigenium vulgare
           Y25]
 gi|308755580|gb|ADO43509.1| flagellar M-ring protein FliF, putative [Ketogulonicigenium vulgare
           Y25]
          Length = 500

 Score =  310 bits (793), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 142/550 (25%), Positives = 238/550 (43%), Gaps = 58/550 (10%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +  LL  +   +     R +IL +  L   +  +     V  P    LY  L+ +    +
Sbjct: 1   MQNLLALWSGFS---LRRRIILVAATLGIFLAVIGLARGVGRPDMALLYAGLDPAASAEV 57

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
             A+ +  + F +   G +I VP++     R+ LA  GLP+  +  GYEL D ++ FG T
Sbjct: 58  VAAVEQQRLPFEVR--GDAIYVPAASRDLLRMTLAGAGLPAPGAQ-GYELLDNLSGFGTT 114

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
           + M +    RA EGE+ARTI ++ G+ AARVHI  P    F+  G   TA+V +   + S
Sbjct: 115 AQMFDAAYWRAKEGELARTILAVPGLQAARVHISPPAARVFQ-QGEPATAAVTVTMASGS 173

Query: 184 -VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242
              + A+A R L+AAAVP LD G+V V+D+   L+ A +        +  +    Q E+ 
Sbjct: 174 ASQQQAQAFRSLIAAAVPGLDPGNVAVIDAKAGLIAAPD--------NAQLADTRQDELR 225

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
             +   L A +G  N    +  E   DT+ I E   DP+ +V  S  +S+ A+RS+ +  
Sbjct: 226 NRVRSLLEARVGAGNAVVELAVETVTDTESIFERRLDPEGRVVVSNDVSETARRSQGN-A 284

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
           + +VTV  N+P  +  +     S E+ + +    NYE++  S         + RL++AV+
Sbjct: 285 DGSVTVASNLPDGAANQEAGSSSSEDRESRNVT-NYELSETSREVLRAPGAVRRLTVAVL 343

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           VN+    E         +    L  + ++V++A G ++ RGD IT+ +M F+   +  + 
Sbjct: 344 VNEPTGPEAA------PRAPDELEALRELVASAVGFDAARGDVITLRAMPFVAPPVLGTE 397

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482
            V        +R F   +  + F    L+   LGL  LR L               + S 
Sbjct: 398 AVAAP-----ARLFDP-MQLVQFGALALVALILGLFVLRPLLRPK---------PQVDSL 442

Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542
           PP+        MP                   +     +  +     RL  +I   +E  
Sbjct: 443 PPLLDDSFAMAMP-------------------MADGFAALDAPDPVARLTALIADRQEDS 483

Query: 543 AKILRKWARS 552
            ++L+ W   
Sbjct: 484 VRLLQSWVED 493


>gi|219670159|ref|YP_002460594.1| flagellar M-ring protein FliF [Desulfitobacterium hafniense DCB-2]
 gi|219540419|gb|ACL22158.1| flagellar M-ring protein FliF [Desulfitobacterium hafniense DCB-2]
          Length = 537

 Score =  309 bits (792), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 118/557 (21%), Positives = 223/557 (40%), Gaps = 34/557 (6%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           I   +L F+   +     +I+ +A+ + V I L ++  ++ ++P Y  ++ +L       
Sbjct: 8   IKQSILGFWGKLSR--PQKIITVAAPLAVAIAL-ISLLYWASNPSYVAIFTELTDIQAGE 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I+  L E  + +++  NGS+I VP       R+ LA  GLP  S  S  E  +K    G 
Sbjct: 65  ITSELDELKVKYKLGSNGSAILVPEKEAAGVRLKLANSGLPKGSEFSWSESLNKT-RVGE 123

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T   + +     L+ E+  T++++S +  ARVH+ +P+   F +     TA+V +     
Sbjct: 124 TESDRRLRYNLGLQTELEATLKTLSNVKDARVHLNIPEETLFIEQQEATTAAVTLTLKEG 183

Query: 183 S--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQA 236
           S         I +L+AA+V  L + DVT+LDS G  L+     +     +    + + Q 
Sbjct: 184 SSITEDQIRGIANLLAASVKGLKLEDVTILDSNGNTLSDVLNEDNQPGKMTATQIQLKQL 243

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
            +     ++   L    G         A LN D      + + P S +  S         
Sbjct: 244 TEENTRKSVQSMLDKAFGAGKTIVRTNATLNFDQVTTDTVTHGPGSVLSESHTTENTT-- 301

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
             TS   +A  V+ N+P              +++K  +  N++++T           + R
Sbjct: 302 -NTSPGGTAPGVDTNVPGYL--APDGTWITSSSEKTSDTLNHQVDTTQEQRIKSPGDIAR 358

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           LS++V+++   ++          +ID  + +I  IV++A GI+  RGD I + ++ F + 
Sbjct: 359 LSVSVLLDADSISAD--------QIDDQIEKIEAIVASAAGIDRERGDEIQVAALPFDKT 410

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476
                                T I   V  +  L+  F+      R     DA+  E+G 
Sbjct: 411 GALEQEQALAE--AARKERLRTYIEWGVGALLALVFLFVLFRM--RSKRKQDAESLELGQ 466

Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536
               +  P+  A T  L+     A   +   +    +     I     K+S   +   ++
Sbjct: 467 ----ALQPVPLAATEELLLAQQEAEREAELKLAQQKQKSAEEIQRQKIKES---VDIYVQ 519

Query: 537 INEERFAKILRKWARSE 553
            N +  A++++ W   E
Sbjct: 520 NNPDEVARLVKTWLAEE 536


>gi|222099438|ref|YP_002534006.1| Flagellar M-ring protein [Thermotoga neapolitana DSM 4359]
 gi|221571828|gb|ACM22640.1| Flagellar M-ring protein [Thermotoga neapolitana DSM 4359]
          Length = 537

 Score =  309 bits (792), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 100/483 (20%), Positives = 196/483 (40%), Gaps = 26/483 (5%)

Query: 1   MAILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLE 56
           M + +Q+   +K       S+ R R  ++  +    I+  +       +PHY  L   L 
Sbjct: 5   MNLFEQIKNLWKKIFDLWNSMPRERRFLVGGIAAALIISIVLFAIIAATPHYRLLVAGLS 64

Query: 57  VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
             +   I   L E NI +++S  G         V + R+ LA++G+    +  G+ +   
Sbjct: 65  EEEAGTIIQKLEEMNIPYKVSPGGDIYVSDKYNVYELRMKLASEGI-LGGTRQGFSIL-S 122

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK-IGARPTASV 175
            NSFG TSF +++    AL+ E+ R+I +I G+  ARVH+V+P    + +   A P ASV
Sbjct: 123 ENSFGATSFDKQVKYQIALQQELERSIMTIRGVKDARVHLVLPKYTYYVRGEMAEPRASV 182

Query: 176 MIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKS 230
           ++          +    I  LV+ AV  L   +V V+D+  + L+    ++ E  +    
Sbjct: 183 LVVLEPGAELTREQVRGIVELVSGAVEGLKPENVRVVDNYSRSLSDMLESDEETFLASSK 242

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290
           L + Q ++   E  + KAL +  G           LN    +     Y+  ++ E  +R 
Sbjct: 243 LELKQQLEKYYENKLKKALESVFGPGRVEVIPDVSLNWTKIETEMKRYEAPARREGLVRS 302

Query: 291 SKDAQRSETSQP--ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
            +       + P     V  E N+P +S   V    +    ++    +NYE+N       
Sbjct: 303 QETETERSQNLPVSGGEVGTESNIPPLSYPSVSGEGT-STYERTHTITNYELNEIYQKIL 361

Query: 349 HDN-YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG-INSRRGDTI 406
            ++  ++  LS+AV+++          + +          IN +V    G + S    ++
Sbjct: 362 QNHEGEISSLSVAVIIDASSTVLQSNNNWNDV--------INDLVEKGIGSVTSSASFSV 413

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
            +  + F +  +  +   ++  +    R     +   +    T L+ ++ +  +RR+   
Sbjct: 414 AVAFLPF-DRTIERTLQRELEQIQARKRFTMYSLGIAILGFLTFLLMYILIVQIRRIRAR 472

Query: 467 DDA 469
             A
Sbjct: 473 KLA 475


>gi|32266110|ref|NP_860142.1| flagellar MS-ring protein [Helicobacter hepaticus ATCC 51449]
 gi|32262159|gb|AAP77208.1| flagellar basal body M-ring protein FliF [Helicobacter hepaticus
           ATCC 51449]
          Length = 570

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 119/575 (20%), Positives = 232/575 (40%), Gaps = 32/575 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNS----PHYDNLYVKLEVS 58
           I +Q+ +         + RI+IL + +++   L     F V +     +Y+ L+  L   
Sbjct: 6   IFEQIARVLNKLNK--KQRIIILTTFVVLISFLTYLVLFKVETKNEYENYEVLFSNLSAE 63

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
           D   I   L +  I ++I  + + I VP   V + RI L + GLP +S N G+++  + +
Sbjct: 64  DSALILQKLQQDKIPYKIPQD-NIIMVPKDNVYEQRITLGSLGLPKTSKNVGFDILLE-S 121

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178
             G T F Q++  + A + E+ARTI+S+  I  A V+I MP    F + G  P+ASV + 
Sbjct: 122 PVGETPFTQDMKYLIAKQNELARTIESLRPIEKAIVNISMPKESLFVQGGHPPSASVKLT 181

Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME------RNILGKS 230
             +      +    ++HLVAAAV  L   +V +++  G+LL   +               
Sbjct: 182 VRDNMFLSTEQVIGVKHLVAAAVERLTPENVKIINQEGELLGEEDEAALQGVLAKKAAFQ 241

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290
               QA ++ +E  I K L   +G    ++ V  + +   +   +  +D +  +      
Sbjct: 242 RRYQQAAENAMEAKIIKFLQPSVGDG-VQAQVTMDYDFSVRNSTQEEFDQNPVIRGIREY 300

Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
            K+ +     Q      V  N+  V   K      +E   + E   N EI  K  + +  
Sbjct: 301 EKERKGFRPPQIGGVPGVVSNIGPVQGLKD--DEMMEWEKESEVVQNNEIGKKVSSISEH 358

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQ-----GKIDSYLAEINKIVSAATGINSRRGDT 405
              L+R+S +V+++ G   EV+G   +       +    + +  + V  A G N  RGD 
Sbjct: 359 YGVLKRVSASVMID-GTYEEVVGEDGETRLEYSPRSQEDMDKFLEGVKKAIGYNEARGDQ 417

Query: 406 ITITSMDFLENQLFNSG-TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
           + + +M F   QL         +F D + R+ +  +  L +++  +++        +++ 
Sbjct: 418 VEVINMPFRNTQLDYRPKDAWEAFSDKVERYLSPFMPLLKYVIVAVILLVF----YKKIV 473

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
                +  EV  +       +          N    L    +D    S  L    ++   
Sbjct: 474 APFAERMLEVQEEEDDDIESLMQIDDDDDDLNKFSELRKRVEDQLGLSSGLDE--DNIKY 531

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDRYT 559
           +    ++ ++I    +  A + +   + E++    
Sbjct: 532 EVLLEKMRNVISERPQEIASLFQTLIKDELDITEG 566


>gi|317121815|ref|YP_004101818.1| flagellar M-ring protein FliF [Thermaerobacter marianensis DSM
           12885]
 gi|315591795|gb|ADU51091.1| flagellar M-ring protein FliF [Thermaerobacter marianensis DSM
           12885]
          Length = 560

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 121/516 (23%), Positives = 203/516 (39%), Gaps = 29/516 (5%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSS 105
           P ++ L+ +L+ +D   I   L E  + ++++  G +I VP + V + R+ LAAQGLP  
Sbjct: 61  PRWEPLFTRLDPADAAAIVSQLEEKGVPYQLAQGGQAILVPGTEVDRLRLELAAQGLPRE 120

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
            +  G EL D +   G T F +++  VR L+GE+ARTI  + G+ AARVH+V+P+   F 
Sbjct: 121 GT-VGLELMDSI-PMGATEFERQVQYVRGLQGELARTISRLDGVEAARVHVVLPEDSPFV 178

Query: 166 KIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA---- 219
                 TA+V+++    +    +   +I HLVA+AV  L   DVTV+D+TG+LL+A    
Sbjct: 179 GQRRPATAAVLVQLKPGASLAPEQVRSIMHLVASAVEGLKPEDVTVVDTTGRLLSAEVPP 238

Query: 220 -NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
                  + G    I +  + E++ ++   L   LG  N  + V AELN D Q I   ++
Sbjct: 239 EEGQGAVVQGDRFEIERRFEQELQQSLQTLLEQVLGPGNVIARVNAELNFDQQVIERHLF 298

Query: 279 DPDSKVERSIRLSKDAQRSETSQPESAVTVE--QNMPHVSDRKVPLPRSLENTDKKEEQS 336
            P +   + I  S    +   +     V V    N+P        L        + E  +
Sbjct: 299 QPPADGGQGILRSIQELQETFTGQGVPVGVPGDSNIPTY----PQLVGGTGQYQRTERTA 354

Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT 396
           NYEIN            + RLS+AVVVN     +                          
Sbjct: 355 NYEINEVVDRVQVAPGAVRRLSVAVVVNGDLTPQRQQALQQAVAAA-------------I 401

Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456
           G + +R D + +  M F +  + +     +            +       V  LL   L 
Sbjct: 402 GTDPQRQDQVEVVGMPF-DTSVADRLQQSLDEERQAREQARRMALLAGAAVLALLALGLL 460

Query: 457 LHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ 516
           +   RR      A      G   +    +  A              +      +      
Sbjct: 461 VAVWRRRRAARRAAAEAQMGGLGVPVQGMPGAGGLPGAVPPAAPAGAGAVGGPAAGAAAA 520

Query: 517 SRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
                     +  ++  +++   E  A+++R W   
Sbjct: 521 WANGRAADAAAYDQVAELVKNQPEHVAQVIRSWLAE 556


>gi|15642994|ref|NP_228036.1| flagellar M-ring protein [Thermotoga maritima MSB8]
 gi|4980719|gb|AAD35313.1|AE001706_12 flagellar M-ring protein [Thermotoga maritima MSB8]
          Length = 532

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 103/484 (21%), Positives = 202/484 (41%), Gaps = 28/484 (5%)

Query: 1   MAILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLE 56
           M I+++L   +K       S+ R R  ++  + +  ++  +      + PHY  L   L 
Sbjct: 1   MNIVERLRDLWKKIVDLWNSMPRERKFLVGGIGIALVIAIVLFAVVASVPHYRLLVSGLN 60

Query: 57  VSDVNRISVALSEANIDFRISDNGSSISVPSS-MVGKARIHLAAQGLPSSSSNSGYELFD 115
             +   I   L E N+ +++S  G  I VP S  V + R+ LA++G+   SS  G+ +  
Sbjct: 61  EDEAGVIIQKLEEMNVPYKVSPGGD-IYVPDSYNVYELRMKLASEGV-LGSSRKGFSIL- 117

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK-IGARPTAS 174
             NSFG TSF +++    AL+ E+ R+I +I G+  ARVH+V+P    + +   A P AS
Sbjct: 118 SENSFGATSFDKQVKYQIALQEELERSIMTIKGVKDARVHLVLPKYTYYVRGEMAEPRAS 177

Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGK 229
           V++          +    I  LV+ AV  L   +V V+D+  + L+     +    +   
Sbjct: 178 VLVVLEPGAELTREQVRGIVELVSGAVEGLKPENVRVVDNYSRSLSDMLETDEGTFLASS 237

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
            L + Q ++   E  I KAL +  G           +N    +     Y+  ++ E  +R
Sbjct: 238 KLELKQQLEKYYESKIKKALESVFGPGRVEVIPDISINWSKIETEMKKYEAPARREGLVR 297

Query: 290 LSKDAQRSETSQPE--SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
             +       + P        + N+P ++   V    +    ++    +NYE+N      
Sbjct: 298 SQETQVEKSQNLPPTGGPAGTDSNIPPLTYPSVTSEGT-STYERTHTITNYELNEVYQKI 356

Query: 348 THDN-YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG-INSRRGDT 405
             +   ++  LS+AV+++          S+       + + IN +V    G I S    +
Sbjct: 357 IQNREGEISSLSVAVIID--------ASSSVLQNSSDWSSVINDLVEKGVGSITSSASLS 408

Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465
           + +  + F +  +  +   ++  ++   R     +   +    T ++ +L +  +RR+  
Sbjct: 409 VAVAFLPF-DRSIERALQEELKQIETRRRFVLYSVGIALLGFLTFMLIYLMIVQIRRIRA 467

Query: 466 IDDA 469
              A
Sbjct: 468 RKLA 471


>gi|188589083|ref|YP_001920202.1| flagellar MS-ring protein [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188499364|gb|ACD52500.1| flagellar M-ring protein FliF [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 520

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 118/562 (20%), Positives = 231/562 (41%), Gaps = 54/562 (9%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            +L+++   ++   S  +   + +    +  I+  ++   + +S  Y  L+  L+  D  
Sbjct: 3   KLLEKVKGLWEKFKSQSKKIKIAIFISCVAVIIAIISTMIYTSSNKYQVLFSNLDPKDAQ 62

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L+E  +  +I   G +I VP+  V + R+ LA +     S +SGYEL D  +SFG
Sbjct: 63  TILAKLNEQKVTTKIQ--GDTILVPNDKVDQLRLELAPE---LKSGSSGYELMDSGSSFG 117

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           +T    ++ ++R  EGE+ +TI+S S I +ARVHI       F K      A+V +    
Sbjct: 118 MTDEEFKVKKLRMQEGELEKTIKSFSQIESARVHITPSTDSVFVKESTPGKAAVYLELKT 177

Query: 182 PS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-------RNILGKSLS 232
            S       ++I  LV+ +  N+   ++ V+D    LLTAN  +          L K  S
Sbjct: 178 GSEITKDQVKSIVALVSGSTENVPKENIEVIDDKMNLLTANLNDDENEVMSSESLDKQYS 237

Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292
           + +  + +++  I   L   +G D  ++ V  +L+ D++Q  + V DP+ KV  S +  K
Sbjct: 238 LEKNYEGKLQKEIVSLLEPVIGKDKVKATVNVDLDFDSKQQTQTVLDPN-KVVVSQQTIK 296

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
           +   +      S   V+ N+   S+       +  N+ ++E+++NYEI            
Sbjct: 297 EVNNTGADGNISESPVDNNI---SNTTDDTNNTNSNSSREEQKNNYEIGKTETKVISAPG 353

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
           +++R++ +VVV+                  +    I   VS A G NS RGD I++  M+
Sbjct: 354 EVKRMTASVVVDGN-------------LDAATQQAIENAVSNAIGFNSVRGDQISVLGMN 400

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F +  L      QV   +  ++                    +G  AL  +  +      
Sbjct: 401 F-DPSLKEDAQSQVDAFNAEAKQKEMQK-----------YMIMGAIALIAIIIVIVILVK 448

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
           +    +       +  +   +       +      I   ++N ++ + + + K +  +  
Sbjct: 449 KRRKNAADEYDDETQLLDVVIGDEKEAEIFEP---IEFETKNEKTHMENEIKKYATDK-- 503

Query: 533 HMIEINEERFAKILRKWARSEI 554
                  E+  +I++ W   + 
Sbjct: 504 ------PEQVVEIIKSWLSEDE 519


>gi|254458688|ref|ZP_05072112.1| flagellar M-ring protein FliF [Campylobacterales bacterium GD 1]
 gi|207084454|gb|EDZ61742.1| flagellar M-ring protein FliF [Campylobacterales bacterium GD 1]
          Length = 570

 Score =  307 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 127/569 (22%), Positives = 238/569 (41%), Gaps = 28/569 (4%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH--YDNLYVKLEVSDV 60
           +  QL+  +   TS  R  I   A + +V  ++FM       +    Y+ L+  L   D 
Sbjct: 6   LFSQLVVLYTKLTSQQRIIIAA-AIIGIVSFLIFMVVYTAKKNTDDEYEILFNSLSSEDA 64

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +I   L +  I +++ DN + I VP  +V K RI +A+ G+P +    G+ELFD    F
Sbjct: 65  AKIVDQLEKDGIVYKLEDN-NIIKVPKDIVYKERITIASMGIPKN-RGVGFELFD-TQEF 121

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           G TSF Q +  +RALEGE++RTI ++  I +A V + +P    F      P+ASVM++ +
Sbjct: 122 GATSFDQNVKYLRALEGELSRTINALGPIESASVSLAIPKDTLFIAKQVDPSASVMVQLV 181

Query: 181 NPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI- 237
                  K    I++LVA+AVP +    V +++S G+ L  +E E   +G+  ++ Q   
Sbjct: 182 EEQRLSPKQIRGIKNLVASAVPKMKASAVMLINSEGETL-GDEDEMAQMGELSTVQQKFK 240

Query: 238 ---QHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293
              + + +  I + ++ F+ G +   + V  E +   Q      YDP++ V RS ++S++
Sbjct: 241 TKEEKKRQSKIIQVISPFVGGEEKVVAQVTIEFDFSIQNSTSETYDPEN-VVRSEQVSEE 299

Query: 294 AQRSET-SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
            +   + ++         N+  V   K    ++ E  +K    +NYE+      T     
Sbjct: 300 KREGGSPAEIGGVPGTVSNIGPVQGLK--SNQTNEKYEKNTGTTNYEVGKTVSTTKSQFA 357

Query: 353 KLERLSIAVVVNKGR--LTEVLGRSAD----QGKIDSYLAEINKIVSAATGINSRRGDTI 406
           +++R+S AV+V+       +  G+S D    +   +S L  +  +V  + GIN +RGD I
Sbjct: 358 RIKRISAAVIVDGKYKFKLDAEGKSTDELEYEPLQESDLDALASLVGRSIGINDQRGDQI 417

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
           ++ ++ F               +     + A       ++   +L+  L    +      
Sbjct: 418 SVKNLQFKRGDTHIEADGVSQAVTFSQTYLAPFSGVFKYVFVLILLLILYKKVISPFALR 477

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
                 E     +  P           +      +    +             +    + 
Sbjct: 478 MLEVSKE--DDDLDRPTLDIDDDEEEDLVEKVQMMRKKVESQLGVGDGFNE--DELKHEV 533

Query: 527 SDLRLLHMIEINEERFAKILRKWARSEIE 555
              ++ +M E   E  A +L+     E +
Sbjct: 534 LLEKVRNMAEDAPEEIAALLQSLLTEEED 562


>gi|251779126|ref|ZP_04822046.1| flagellar M-ring protein FliF [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243083441|gb|EES49331.1| flagellar M-ring protein FliF [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 520

 Score =  307 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 118/562 (20%), Positives = 231/562 (41%), Gaps = 54/562 (9%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            +L+++   ++   S  +   + +    +  I+  ++   + +S  Y  L+  L+  D  
Sbjct: 3   KLLEKVKGLWEKFKSQSKKIKIAIFISCVAVIIAIVSTIIYTSSNKYQVLFSNLDPKDAQ 62

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L+E  +  +I   G +I VP+  V + R+ LA +     S +SGYEL D  +SFG
Sbjct: 63  TILAKLNEQKVTTKIQ--GDTILVPNDKVDQLRLELAPE---LKSGSSGYELMDSGSSFG 117

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           +T    ++ ++R  EGE+ +TI+S S I +ARVHI       F K      A+V +    
Sbjct: 118 MTDEEFKVKKLRMQEGELEKTIKSFSQIESARVHITPSTDSVFVKESTPGKAAVYLELKT 177

Query: 182 PS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-------RNILGKSLS 232
            S       ++I  LV+ +  N+   ++ V+D    LLTAN  +          L K  S
Sbjct: 178 GSEITKDQVKSIVALVSGSTENVPKENIEVIDDKMNLLTANLNDDENEMMSSESLDKQYS 237

Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292
           + +  + +++  I   L   +G D  ++ V  +L+ D++Q  + V DP+ KV  S +  K
Sbjct: 238 LEKNYEGKLQKEIVSLLEPVIGKDKVKATVNVDLDFDSKQQTQTVLDPN-KVVVSQQTIK 296

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
           +   +      S   V+ N+   S+       +  N+ ++E+++NYEI            
Sbjct: 297 EVNNTGADGNISESPVDNNI---SNTTDDTNNTNSNSSREEQKNNYEIGKTETKVISAPG 353

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
           +++R++ +VVV+                  +    I   VS A G NS RGD I++  M+
Sbjct: 354 EVKRMTASVVVDGN-------------LDAATQQAIENAVSNAIGFNSVRGDQISVLGMN 400

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F +  L      QV   +  ++                    +G  AL  +  +      
Sbjct: 401 F-DPSLKEDAQSQVDAFNAEAKQKEMQK-----------YMIMGAIALIAIIIVIVILVK 448

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
           +    +       +  +   +       +      I   ++N ++ + + + K +  +  
Sbjct: 449 KRRKNAANEYDDETQLLDVVIGDEKEAEVFEP---IEFETKNEKTHMENEIKKYATDK-- 503

Query: 533 HMIEINEERFAKILRKWARSEI 554
                  E+  +I++ W   + 
Sbjct: 504 ------PEQVVEIIKSWLSEDE 519


>gi|260772323|ref|ZP_05881239.1| flagellar M-ring protein FliF [Vibrio metschnikovii CIP 69.14]
 gi|260611462|gb|EEX36665.1| flagellar M-ring protein FliF [Vibrio metschnikovii CIP 69.14]
          Length = 500

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 103/519 (19%), Positives = 217/519 (41%), Gaps = 34/519 (6%)

Query: 48  YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
              L    E  ++  +   L +   ++R+  +G++I VPS      R+++   GL   + 
Sbjct: 1   MRPLGA-FETEELIPVLDYLDQQKQNYRL--DGNTILVPSKDFNSIRLNMVRSGL-HQTR 56

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
           ++G ++  +   FG++  +++     + E ++A+ I+ +  +  ARV + +P    F + 
Sbjct: 57  HAGDDILLQDMGFGVSQRLEQERLKLSRERQLAKAIEEMRQVNRARVLLALPQQSVFVRH 116

Query: 168 GARPTASVMIRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-- 223
               +ASV +        K    ++I  +VA+AVP +    VTV D  G+LL++   +  
Sbjct: 117 NQEASASVSLTLRTGMNLKQEEVDSIVDMVASAVPGMRPTRVTVTDQHGRLLSSGSQDPI 176

Query: 224 RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK 283
                K   + +  +  +   I+  L   LG+ N+ + V  EL+    +    V+DP++ 
Sbjct: 177 ATARRKEQELERRQEENLRNKIDSVLIPILGLGNYTAQVDIELDFSAIEQTRKVFDPNTP 236

Query: 284 VERSIRLSKDAQRSE---------TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEE 334
             RS    +D              ++QP +  ++ Q++  + D  +    S+     +E 
Sbjct: 237 ATRSEYTLEDYNNGNVVAGIPGALSNQPPADASIPQDIAQMKDGSILGRGSV----HREA 292

Query: 335 QSNYEINTKSIATTHDNYKLERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVS 393
             N+E++T           + R ++AV + N+  +    G+   Q   +S +  I  ++ 
Sbjct: 293 TRNFELDTTISHERRQTGVINRQTVAVAIKNRAVVNPETGQVTYQALSESEINAIRTLLI 352

Query: 394 AATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVT 453
              G N  RGD + + SM F E +      + +      +     + +ALV +V  L++ 
Sbjct: 353 GTVGFNENRGDLLKVLSMQFAEPETDPLIDIPIWENPHFNDWVRWLASALVIIVIVLVLV 412

Query: 454 FLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR 513
                A+++L N       ++ G   L   PI +   T L     I  D    D+F    
Sbjct: 413 ---RPAMKKLLNPVVDDDDQLYGPDGL---PIGADGETSL-----IGSDIEGGDLFEFGS 461

Query: 514 NLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
            +    N +  +     +  ++    E  A++++ W ++
Sbjct: 462 GIDLP-NLHKDEDVLKAVRALVANEPELAAQVVKNWMQN 499


>gi|253682590|ref|ZP_04863387.1| flagellar M-ring protein FliF [Clostridium botulinum D str. 1873]
 gi|253562302|gb|EES91754.1| flagellar M-ring protein FliF [Clostridium botulinum D str. 1873]
          Length = 524

 Score =  307 bits (786), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 123/565 (21%), Positives = 239/565 (42%), Gaps = 56/565 (9%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            I +Q  + F+    L + + +  + ++L  I+  +     +N+  Y  LY  ++ +D  
Sbjct: 3   KIKEQFRKLFEKFKELSKIKKIAFSILVLGIIIGIVYLVISLNTTKYAVLYKDMDPNDAQ 62

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            +   L++  +++++ +N  SI VP     + R+ LA Q    +S + GYE+ D  ++FG
Sbjct: 63  TVMAKLADKKLEYKVENN--SIKVPEDKAAELRMELAPQ---LTSGSKGYEILDDGDTFG 117

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           +T   +E+   RALEGE+AR I+S+  +  A+V +VM   G+F K     +ASV +    
Sbjct: 118 MTDKERELKYKRALEGELARDIKSLPEVKEAKVLLVMQQEGNFFKQEDPGSASVTLEFET 177

Query: 182 PS--VYKSAEAIRHLVAAAVPNLDMGD---VTVLDSTGKLLT-------ANEMERNILGK 229
                 +  +AI  LV+ +V NL   +   V V++   + L+        N+   ++  K
Sbjct: 178 GKKVTKEQIKAIVALVSGSVKNLPKENIKVVGVVNGKTQDLSEDLFKEDGNKDISSVTEK 237

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
             +  + ++ E    I   L    G    ++AV  ++N D  +    ++DP++ V RS  
Sbjct: 238 QENYKKNLEKEYVKKIMNVLTPKYGEG-VKAAVNVDVNFDASEKTSTLWDPNN-VVRSEE 295

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
             KD + S+ S+  SA  V+ NM +  + K     S      ++   NYE+         
Sbjct: 296 TEKDTENSKGSK-TSASPVDNNMSNTYNSKDENGTST----HEKTTKNYEVGKIEQKVVG 350

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
              K++++S +V +N            D+        +IN +V+ A   +  RGD +++ 
Sbjct: 351 APGKIKKISASVTIN------------DENLSPVDKDKINSLVAGAISYDESRGDIVSVE 398

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
            M F E    ++        +         I          L    G+ A  R     + 
Sbjct: 399 GMKFNEVNESDAAEEAKKKAEEQKAKEKAFIYKCAGGALLALAIIAGIVAFIRKRRKKNE 458

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
            + EV   SI             ++ +DN+      + + S + + ++  N+YV K+   
Sbjct: 459 SEEEVVSDSID------------MLIDDNV---EPTEQLKSINFDEENE-NTYVEKE--- 499

Query: 530 RLLHMIEINEERFAKILRKWARSEI 554
            +        E+  +I++ W   + 
Sbjct: 500 -IKKYATEKPEQVVEIIKAWMAEDE 523


>gi|315638805|ref|ZP_07893977.1| flagellar M-ring protein FliF [Campylobacter upsaliensis JV21]
 gi|315481023|gb|EFU71655.1| flagellar M-ring protein FliF [Campylobacter upsaliensis JV21]
          Length = 564

 Score =  307 bits (786), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 119/574 (20%), Positives = 232/574 (40%), Gaps = 26/574 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSP----HYDNLYVKLE 56
           M   + LLQ  +   +L R + +++A+ I+V +   +    F N P     Y  L     
Sbjct: 5   MDFKNMLLQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRNGPAGSNGYVPLIENAN 64

Query: 57  VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
            S    I   L +  + +R+ +  S+I VP   V + ++ +A++GL   +   G+E+FDK
Sbjct: 65  PSTAGAIVTRLEQNGVPYRLENE-STILVPQDQVNRQKMFIASEGLIKDNR-VGFEVFDK 122

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
              FG TS  +++   RAL+GEIAR I+++  I +A V + +P    F +    PTASV 
Sbjct: 123 -QIFGATSAEEKVRAQRALQGEIARIIETLEPIRSASVILALPKESVFTERQIPPTASVT 181

Query: 177 IRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSI 233
           I   +      K  + ++++VAA+VP L   +V + D  G  L   ++E   +L   +  
Sbjct: 182 INIKDGFRLTRKQIDGVKNIVAASVPRLTKENVKISDQNGNTLDEQQLESGEVLAMQIRY 241

Query: 234 VQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292
            +  + E+E  I  +LA F  G D  + +V  E +   Q+ +  +YDP++ V     L++
Sbjct: 242 KRDSERELEEKIINSLAPFAGGRDKLQVSVNIEYDFSKQESKSEIYDPNTVVRSEQTLNE 301

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
           +    +  + +       N+  V    +     +++  K +  +N EI+     T     
Sbjct: 302 EKTGRKDPEIQGVPGAVSNIGPV--EGLANNGVIDSYKKNQVTTNNEISKTITNTQKSFG 359

Query: 353 KLERLSIAVVVNKGRL----TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
              R+S AV ++             +S       + L  +  IV      N+ RGD++ +
Sbjct: 360 VPLRISAAVTIDGKYEDVVDENGEVKSEYVPLPQAQLNGVESIVRNTINFNAARGDSVVV 419

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
            ++ F    +     V+        R     I  + + +  +L+ F     +        
Sbjct: 420 QNLPFYRESIKVESKVKT----FYGRFIEPFIPPVKYFIAAILLFFFYKKVIAPFTQKML 475

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
             +     +     P          +   N A     + +       +  I   V  +  
Sbjct: 476 --EDVAAQEEAQQGPNAIIDDAEDALEKFNAARKKVEEQLGFGENFNEDSIQYDVLLE-- 531

Query: 529 LRLLHMIEINEERFAKILRKWARSEIEDRYTQHI 562
            +L  ++    E  A +L+   +++ +    + I
Sbjct: 532 -KLRALVSDKSEEIAALLQNLIQNDSDFSENKDI 564


>gi|294084401|ref|YP_003551159.1| flagellar M-ring protein FliF [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292663974|gb|ADE39075.1| flagellar M-ring protein FliF [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 572

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 117/549 (21%), Positives = 224/549 (40%), Gaps = 29/549 (5%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
           R  +   A++I     LF+    F+ +P    LY  L  S+  R+  AL  + ++  +  
Sbjct: 39  RRALPTFAAIIFAVAGLFVFV--FMQAPQRTTLYASLPESEKARVVEALINSGVEVTLDP 96

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
               + VP+S   +A++ LAAQGLP+S  +    +       G +  ++ +   ++ E E
Sbjct: 97  TTGDVLVPTSDFHQAKMSLAAQGLPTSVPDGYASV--GDIPMGSSRSVENVRLKQSQEIE 154

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLVA 196
           +AR+I  I G+V+ARVH+ +P+   F +    PTASV I+  N      +  EA+ HLV+
Sbjct: 155 LARSIGEIDGVVSARVHLAIPEKSVFARNATPPTASVFIQMNNGRTLGSQQVEAVVHLVS 214

Query: 197 AAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLG 254
           ++VP++   DVTV+D  G LL+   N+M   +    L     +++     +   ++  +G
Sbjct: 215 SSVPSMAKTDVTVVDQFGALLSNPTNDMASLLSDSQLQHRIRLENIYRNRVISLVSPIVG 274

Query: 255 VDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPH 314
             N  S +  +++    +  E   DPD    RS + S D +    ++         N P 
Sbjct: 275 AGNVTSQINIDIDYTRSETTEERVDPDGNALRSEQKSVDMKSDANAR--GIPGATANRPP 332

Query: 315 VSD------RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV-NKGR 367
           +              +   +T    E  NYE++     T   + ++  +  AV+V +K  
Sbjct: 333 LQSEIDSVQADDAGAKGSVSTQSSNEVRNYEVSRTVSTTQSPSTRIVGIQAAVLVRDKEV 392

Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN-QLFNSGTVQV 426
           +    G           LAEI K+V+ A GI++ RGD +T++S  F+   +        +
Sbjct: 393 VNPETGLMEVVPFTPEKLAEIEKLVANAIGIDAERGDKLTVSSSAFVSAIEGVTKAWYDM 452

Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486
            +   L +   T++   V ++G +          R L                +      
Sbjct: 453 EWAINLMKQGMTLLIMGVVVLGVI----------RPLIGRIMVPAAVGAPGEAMVSLDDD 502

Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE-ERFAKI 545
                  +       D   +     +      +++  +    + ++ MI  +E  R + +
Sbjct: 503 LGGEAIEVQEGESLEDIKAKLKPKKAAISAEMLDTANTYDDKVAVIRMIVGDEAGRVSNV 562

Query: 546 LRKWARSEI 554
            +     +I
Sbjct: 563 FKSMMERDI 571


>gi|169831911|ref|YP_001717893.1| flagellar MS-ring protein [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169638755|gb|ACA60261.1| flagellar M-ring protein FliF [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 518

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 124/546 (22%), Positives = 212/546 (38%), Gaps = 45/546 (8%)

Query: 12  KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71
           +   +L  T  + L  +++  +++      FV   +Y  L+  LE  +   I   L    
Sbjct: 12  ERWQALSTTHKVALVLLVIGSLLVLYYLAQFVRQMNYTTLFAGLEPREAGAIVEQLDGMR 71

Query: 72  IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131
           I + +SD G++I VP + V +ARI LA  G    +  +G+ELFD+    G+T F Q++  
Sbjct: 72  IPYMLSDGGTTIQVPRAQVDQARIQLATSG-ALGADGAGWELFDRT-KLGVTEFEQQVNY 129

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYKSAE 189
            RAL+ E+ RTI  +  + AARVH+V+P+   F    A PTASV ++             
Sbjct: 130 QRALQEELRRTIVQLDEVEAARVHLVLPEKSIFATEKAPPTASVAVKLRPGTDLNQSQVR 189

Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL---SIVQAIQHEIEMNIN 246
            +  LVA +V  L   +V ++D  G+LL  +  +  + G +L    I +  + E+EM + 
Sbjct: 190 GVVALVAGSVEGLTPENVHLVDMRGRLLHPDGHQDPVSGLALTHQEIKRNYERELEMRLQ 249

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306
             L   +G D     V A+L+   QQ    V   +++V     + ++++ S T       
Sbjct: 250 NMLQRIVGPDRVVVMVSADLDFSQQQSVSTVPYGEAQVVSEQTVREESEGSGTGGGVPGT 309

Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
                  +    +     +  +  ++E  +NY++ T          ++ RLS +VVV+  
Sbjct: 310 DANLPATYPLAGRPADAGAPTSFVREERTANYQVGTLQQTVIQPPGEVRRLSTSVVVDGD 369

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
                           +   +I  +V+AA G N  RGD I +  M F         T Q 
Sbjct: 370 -------------LSAARAEQIQGVVTAALGYNPERGDQILVAPMAF-------DTTYQE 409

Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486
              + L R  A                       R+L        G +    IL    + 
Sbjct: 410 QLEEDLRRAEALAAE----------------RERRQLIYYAALAGGVLLLLIILIIAGVV 453

Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546
                   P      +       S +      +     KQ   R   +     E  A+I+
Sbjct: 454 VGRRLQRAPRPQPQPEVEELSPLSVAAAAADPVFFLSDKQRGAR--ELARQKPEEVAQII 511

Query: 547 RKWARS 552
           + W   
Sbjct: 512 KVWLTE 517


>gi|57506034|ref|ZP_00371957.1| flagellar M-ring protein FliF [Campylobacter upsaliensis RM3195]
 gi|57015642|gb|EAL52433.1| flagellar M-ring protein FliF [Campylobacter upsaliensis RM3195]
          Length = 560

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 119/574 (20%), Positives = 232/574 (40%), Gaps = 26/574 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSP----HYDNLYVKLE 56
           M   + LLQ  +   +L R + +++A+ I+V +   +    F N P     Y  L     
Sbjct: 1   MDFKNMLLQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRNGPAGSNGYVPLIENAN 60

Query: 57  VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
            S    I   L +  + +R+ +  S+I VP   V + ++ +A++GL   +   G+E+FDK
Sbjct: 61  PSTAGAIVTRLEQNGVPYRLENE-STILVPQDQVNRQKMFIASEGLIKDNR-VGFEVFDK 118

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
              FG TS  +++   RAL+GEIAR I+++  I +A V + +P    F +    PTASV 
Sbjct: 119 -QIFGATSAEEKVRAQRALQGEIARIIETLEPIRSASVILALPKESVFTERQIPPTASVT 177

Query: 177 IRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSI 233
           I   +      K  + ++++VAA+VP L   +V + D  G  L   ++E   +L   +  
Sbjct: 178 INIKDGFRLTRKQIDGVKNIVAASVPRLTKENVKISDQNGNTLDEQQLESGEVLAMQIRY 237

Query: 234 VQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292
            +  + E+E  I  +LA F  G D  + +V  E +   Q+ +  +YDP++ V     L++
Sbjct: 238 KRDSERELEEKIINSLAPFAGGRDKLQVSVNIEYDFSKQESKSEIYDPNTVVRSEQTLNE 297

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
           +    +  + +       N+  V    +     +++  K +  +N EI+     T     
Sbjct: 298 EKTGRKDPEIQGVPGAVSNIGPV--EGLANNGVIDSYKKNQVTTNNEISKTITNTQKSFG 355

Query: 353 KLERLSIAVVVNKGRL----TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
              R+S AV ++             +S       + L  +  IV      N+ RGD++ +
Sbjct: 356 VPLRISAAVTIDGKYEDVVDENGEVKSEYVPLPQAQLNGVESIVRNTINFNAARGDSVVV 415

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
            ++ F    +     V+        R     I  + + +  +L+ F     +        
Sbjct: 416 QNLPFYRESIKVESKVKT----FYGRFIEPFIPPVKYFIAAILLFFFYKKVIAPFTQKML 471

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
             +     +     P          +   N A     + +       +  I   V  +  
Sbjct: 472 --EDVAAQEEAQQGPNAIIDDAEDALEKFNAARKKVEEQLGFGENFNEDSIQYDVLLE-- 527

Query: 529 LRLLHMIEINEERFAKILRKWARSEIEDRYTQHI 562
            +L  ++    E  A +L+   +++ +    + I
Sbjct: 528 -KLRTLVSDKSEEIAALLQNLIQNDSDFSENKDI 560


>gi|213622939|ref|ZP_03375722.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 344

 Score =  306 bits (783), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 86/303 (28%), Positives = 147/303 (48%), Gaps = 9/303 (2%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 44  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 103

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 104 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 161

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +              A+ HLV++AV  L  G+VT++D +G LLT
Sbjct: 162 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 221

Query: 219 -ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            +N   R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  E  
Sbjct: 222 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 281

Query: 278 YDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP-HVSDRKVPLPRSLENTDKKE 333
           Y P+    ++   S+    SE      P        N P   ++  +  P + +   +  
Sbjct: 282 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 341

Query: 334 EQS 336
            Q+
Sbjct: 342 PQT 344


>gi|149201593|ref|ZP_01878567.1| Flagellar FliF M-ring protein [Roseovarius sp. TM1035]
 gi|149144641|gb|EDM32670.1| Flagellar FliF M-ring protein [Roseovarius sp. TM1035]
          Length = 564

 Score =  306 bits (783), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 116/562 (20%), Positives = 224/562 (39%), Gaps = 41/562 (7%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
                +    R  + A  +L+ + L +AA   +   +   L+  L  ++ +    AL+ A
Sbjct: 28  MDGFIAQPALRRALPAIGVLLVVTLGLAAWLLLAPANRVTLHAGLPEAEKSLALDALTAA 87

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
            +D R+  +  +++V +     AR+ LA QGLP  +++    +       G +  ++   
Sbjct: 88  GMDARLDPSSGALTVAADQFHSARMLLATQGLPEGATDGMSAI--DEMPMGTSRQIESAR 145

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE- 189
             R  E ++AR+IQ +  + AARVH+ +P+  +F +    P ASV +          A+ 
Sbjct: 146 LRRMQELDLARSIQELRPVRAARVHLALPERSAFVRDSQPPRASVFLELAPGMALDQAQV 205

Query: 190 -AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNIN 246
            AI  LVAAAVP++  G+V+V+D TG LLT+ E +  ++   + +   + ++      + 
Sbjct: 206 RAIVSLVAAAVPDMPRGNVSVVDQTGTLLTSPEEDPVQSEADRQMQHQRRLETLYRDRVL 265

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE-TSQPESA 305
             L   +G  N    V  +++    +I    Y PD+ +      S+    ++    P + 
Sbjct: 266 SLLTPIVGAGNAAVEVTLDMDFTRSEITSEEYLPDTALRSEQSSSQQTSGAQAGGIPGAV 325

Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN- 364
                N   +++      +S           NYE++ +         ++ R+  AV+++ 
Sbjct: 326 ANTPPNEAQMAEAATQGAKSGTTNSATSSTRNYEVSRRVETRQPQTAQINRVHAAVLLHR 385

Query: 365 -KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ--LFNS 421
                    G +         LAEI  +  +A G N+ RGD +T+ S  F+     +   
Sbjct: 386 LPTPAAPAEGEATSAAPEAVPLAEIEALTRSAIGYNAERGDIVTVASAPFVVAPSVISAE 445

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
                +++  L R  A +           L   + L  +R + N                
Sbjct: 446 RWYDAAWLPTLGRTLAQLA----------LFGIIVLGVVRPILNR--------------L 481

Query: 482 PPPISSAVTTGLMPNDNI------ALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
            PP+ +  TTG+   D I      +L +  Q + + + N +    +   ++    L  M 
Sbjct: 482 LPPVGATATTGMTYGDAIEVPRGESLSALRQRLETAAPNAEDLNGAITYEEKIDLLRQMA 541

Query: 536 EINEERFAKILRKWARSEIEDR 557
                R A + +       EDR
Sbjct: 542 GSETNRIAGVFKSMITPTGEDR 563


>gi|295399809|ref|ZP_06809790.1| flagellar M-ring protein FliF [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312111679|ref|YP_003989995.1| flagellar M-ring protein FliF [Geobacillus sp. Y4.1MC1]
 gi|294978212|gb|EFG53809.1| flagellar M-ring protein FliF [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311216780|gb|ADP75384.1| flagellar M-ring protein FliF [Geobacillus sp. Y4.1MC1]
          Length = 529

 Score =  305 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 113/573 (19%), Positives = 217/573 (37%), Gaps = 75/573 (13%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L++   F+K  T   +   +   +++L+ I    A  FF        LY  L   +  +I
Sbjct: 9   LNRFTLFWKERTKKQKWIAVASLALLLLIIG---ATVFFATRTEMVPLYSNLTPQEAGQI 65

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L + NI   ++DNG++I VP  +    ++ LAA+G+P+S     Y  F K  SFG+T
Sbjct: 66  KETLDQRNIKSEVADNGTTIKVPKDLADSLKVELAAEGIPNSGM-IDYSFFGKNASFGMT 124

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA-RPTASVMIRAINP 182
                + ++ A++ E+A  I+SI+G+  A+V I +P    F        +AS++++    
Sbjct: 125 DNEFNVVKLEAMQNELANLIKSINGVEDAKVMINLPQPSVFASDNQGEASASIVLKTKPG 184

Query: 183 S--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG----KSLSIVQA 236
                +  +A+ HLV+ +VPNL   ++ +++   +       E+N  G        I Q 
Sbjct: 185 YQFSDQQIKALYHLVSKSVPNLPTDNIVIMNQFFEYFDLKNDEKNSTGTTFAAQQEIKQQ 244

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIRLS 291
           I+ +I+  + + L   +G D    +V A+++   ++  E +  P     +  +  S++  
Sbjct: 245 IERDIQQRVQRMLGTMMGQDKVAVSVTADIDFTQERREENLVAPVDEENNEGIAISVQRI 304

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           ++      + P        N   V + +     +  N ++ EE  N E+N          
Sbjct: 305 QETYSGNGAPPGGTAGTGAN--EVPNYQAGANEANGNYERTEETINNEVNRIKKNIVESP 362

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT---- 407
           YK+  L I V+V      +    S  Q  ID     +  IV  +   + + G T+T    
Sbjct: 363 YKIRDLGIQVMVEPPDPKDP--NSLPQQTIDDIQKILGTIVRTSI--DKQYGQTLTDQDI 418

Query: 408 -----ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
                ++   F     F      +             I   + LV  + +  L   + + 
Sbjct: 419 QNRVVVSVQKFNGKATFEEPKPAIPMW--------VYIVGGIGLVLLITLFILWWRSRK- 469

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
                                            +D    +   +            I+  
Sbjct: 470 ---------------------------------SDEEEEEEEEEIFEQPMVQEIPDIHEQ 496

Query: 523 VSKQSDLR--LLHMIEINEERFAKILRKWARSE 553
            ++ +  R  L  + +   + FAK+LR W   E
Sbjct: 497 ETESTMRRKQLERLAKEKPDEFAKLLRTWLSEE 529


>gi|237666941|ref|ZP_04526926.1| flagellar M-ring protein FliF [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|237658140|gb|EEP55695.1| flagellar M-ring protein FliF [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 520

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 112/562 (19%), Positives = 242/562 (43%), Gaps = 54/562 (9%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            +L+++ + F+   S  +   + + + I   ++  ++A F+  S  Y  L+  L+ +D  
Sbjct: 3   KLLEKVKELFEKFKSQNKKIKIAVIASIAAVLIAIVSAVFYSTSNKYAVLFSNLDTTDAK 62

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            +   L+   ++ +I  + ++I VP + V K ++ LA       S ++GYEL D+ +SFG
Sbjct: 63  TVVDRLTTEKVESKIDSSTNTIWVPKNQVDKLKLELAPD---LKSGSTGYELMDEQSSFG 119

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           +T    ++ + R LEGEI + I+S+  I  A+V+I   D   F K  A  +A+V I+   
Sbjct: 120 MTDEEFKLKKKRMLEGEIEKVIKSLEPIENAKVNITEADNSVFVKDKAVGSAAVTIKLKE 179

Query: 182 PSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-------EMERNILGKSLS 232
            +       +AI  +V+ ++ N+   +VTV+D    LLT +       +     + K   
Sbjct: 180 GATLTDDQVKAIVAVVSTSIENVPKENVTVIDQNSNLLTRDLNEEANGQASSETISKQHR 239

Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292
             +  +  ++ +I   L   +G  N  + V A L+ D++Q  E   DP+  +      S+
Sbjct: 240 AEEEYEDRLQKSIVSLLEPIVGKGNVTAVVKANLDFDSKQQTETTIDPNKVIV-----SQ 294

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
           +  +   +  +  V+ +  + +    ++    S  N+ K+E+++NY+       T     
Sbjct: 295 ETLKEINNNGDGTVS-QSPVDNNMSNEIVNNNSSSNSSKEEQKTNYDSGKSESKTIQAQG 353

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
           K++RL+  V +NK                     E    V+ A GI++ RGD IT++ M 
Sbjct: 354 KVDRLTATVYLNK-------------TLTQEERQEFEDGVANAIGIDATRGDQITVSGMT 400

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F  + +  +           + +  T++     ++G +L+  +    ++R     + ++ 
Sbjct: 401 FDTSSIDKAQATLEEMNAEEAANKKTMMMIAGGVIGAILIGAIIFFIIKRRKKKQEEEEQ 460

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
            +            + +   ++P +    D    +  +   +L++ I  Y +++      
Sbjct: 461 LLD-----------TLIDDTIIPKEPDTFDPIEFETKTQKSHLENEIKKYATEK------ 503

Query: 533 HMIEINEERFAKILRKWARSEI 554
                  E+  +I++ W     
Sbjct: 504 ------PEQVVEIIKSWLTENE 519


>gi|212639567|ref|YP_002316087.1| flagellar MS-ring protein [Anoxybacillus flavithermus WK1]
 gi|212561047|gb|ACJ34102.1| Flagellar basal body M-ring protein FliF [Anoxybacillus
           flavithermus WK1]
          Length = 529

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 118/572 (20%), Positives = 229/572 (40%), Gaps = 73/572 (12%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +++L  F+   T   +   L L  +++V + L     FF    ++  LY  L   +  +I
Sbjct: 9   IERLKLFWSERTKQQKMMALGLIGLLVVSVAL---TAFFATRTNFVPLYSNLSPQEAGQI 65

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L +  I  +I+DNG++I VP  +V   ++ LAA+G+P S S   Y  F K + FG+T
Sbjct: 66  KATLDQRGIKSQITDNGTTILVPEQLVNTLKVELAAEGIPDSGS-IDYSFFGKNSGFGMT 124

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA-RPTASVMIRAINP 182
                + ++ A++ E+A  I+SI G+  A+V I +P    F        +AS++++    
Sbjct: 125 DNEFNVLKIEAMQTELANLIKSIDGVEDAKVMINLPQPTIFVGDQQEEASASIVLKTKAG 184

Query: 183 S--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK----SLSIVQA 236
                +  +++ HLV+ +VPNL   ++ +++   +       E    GK       + Q 
Sbjct: 185 YKFNEQQIKSLYHLVSKSVPNLPTDNIVIMNQYFEYFDLKNEENFSSGKTFAEQYEVKQQ 244

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD-----SKVERSIRLS 291
           I+ +I+  + + L   +G D    +V A+++   +  +E + +P        +  S++  
Sbjct: 245 IERDIQRRVQQMLGTMIGQDKVVVSVTADVDFTQENRQEELVEPVDKENMEGIAVSVQRI 304

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
            +    + +QP     V  N   V   +     +  + ++ EE  N E+N          
Sbjct: 305 TETFSGQGAQPGGTTGVGGNA--VPGYQGANGGTNGDYERIEETINNEVNRIKKEIVASP 362

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT-----G--INSRRGD 404
           YK++ L I V+V   +  +     A    +D     +  IV  +      G   ++   +
Sbjct: 363 YKVKDLGIQVMVEPPKANDPNSLPAQT--VDDITKILGTIVRTSVDKDIAGQWTDTDLQN 420

Query: 405 TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
            + ++   F     FN  T  +     ++   A  +   +       + FL L       
Sbjct: 421 RVVVSVQPFNGKVQFNEQTSTIPTWAYIAGGGAIALLLAL-------LVFLWLR------ 467

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
                KK ++  + +L   P++  +                             +N  V 
Sbjct: 468 ---KRKKEQLDDELLLQEEPVAVQIPD---------------------------VNEEVE 497

Query: 525 KQSDLR---LLHMIEINEERFAKILRKWARSE 553
            +S LR   L  + +   E FAK+LR W   E
Sbjct: 498 TESTLRRKQLEKLAKEKPEEFAKLLRTWLAEE 529


>gi|325288778|ref|YP_004264959.1| flagellar M-ring protein FliF [Syntrophobotulus glycolicus DSM
           8271]
 gi|324964179|gb|ADY54958.1| flagellar M-ring protein FliF [Syntrophobotulus glycolicus DSM
           8271]
          Length = 534

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 116/556 (20%), Positives = 225/556 (40%), Gaps = 35/556 (6%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           I+  +  F++  +   R  ++    V+L  + + +    + ++P Y  L+ KL  ++   
Sbjct: 8   IIKSVRGFWEKLSKPQRVILIAAPLVVLTALTILIV---WASTPSYAVLFSKLSSTEAGA 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I+  L + N  +++ ++G++I VP S + + R+ LA  GLP  S+ S   L       G 
Sbjct: 65  ITTKLKDLNYSYKLEESGATIQVPESQLAQIRLDLANAGLPQKSTFSFENL--NEVHLGE 122

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T   +++  V  L+ E+  TIQ++ GI  ARVHIV+P+   F +     TA+V ++    
Sbjct: 123 TDKDRQLRYVLGLQNELETTIQTMDGIEYARVHIVIPEQSLFTEKQTESTAAVTVKKNPG 182

Query: 183 --SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAI 237
                    AI +L+  +V  L +  VT++D+ G +L+     +    +    L + Q++
Sbjct: 183 TELSADQVRAIANLLVYSVEGLQIEKVTIVDTNGNVLSDELGKDKTNRMSVTDLQLQQSV 242

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           ++ I+ ++   L    G         A LN D Q+I    +  D  +E     S+     
Sbjct: 243 ENNIQKSVQTMLDKAFGAGKTIVRTNAALNFDQQKITSQTHT-DGAIESRQETSERVSDG 301

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
           +T+        E N+P     +     ++  ++K     NY+ N     T     +++RL
Sbjct: 302 QTT--GGVPGTETNIPTYPADEQTDQGTI--SEKYTSTENYQPNVVQEETVVSPGQIKRL 357

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           +I+V+ +   +T               L+ I  IV++A G++  RGD I +  + F +  
Sbjct: 358 TISVMADTDSIT------------AQQLSNIEAIVASAAGVDQNRGDVIQVAGLPFDKTT 405

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
                                 I   V  +  + V  L     RR  + ++         
Sbjct: 406 TLQEQAEAEIAERNAKILQYAEIGVAVLAILLVAVILLRNRRARRRMSGEEQVLATAEDM 465

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
           ++L+       +   L       L  + + + S     + +I   V K S+         
Sbjct: 466 TLLTVEEAERMLADQLDAERQAELRIAKKKVKSPDEIEREKIRKEVEKYSN--------E 517

Query: 538 NEERFAKILRKWARSE 553
           N    A+++R W   E
Sbjct: 518 NPSEVARLVRTWLAEE 533


>gi|265985824|ref|ZP_06098559.1| flagellar M-ring protein FliF [Brucella sp. 83/13]
 gi|264664416|gb|EEZ34677.1| flagellar M-ring protein FliF [Brucella sp. 83/13]
          Length = 324

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 143/315 (45%), Positives = 204/315 (64%), Gaps = 3/315 (0%)

Query: 4   LDQLLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
             QL++  K     LG  +++ L  V    +   +    ++  P Y+ LYV L   DVN 
Sbjct: 10  FQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGCPSYETLYVGLSRDDVNC 69

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           + +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S GL
Sbjct: 70  MGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGL 128

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           TSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA   
Sbjct: 129 TSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGG 188

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEI 241
              +SA++IR LVAAAVP+LD   VTVLD+ G LL +A E        + S+ Q +   +
Sbjct: 189 FSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVAGHV 248

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           + +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S VERS+R+ +++  S  ++
Sbjct: 249 DDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESCVERSVRVVRESGDSRNNR 308

Query: 302 PESAVTVEQNMPHVS 316
            ++A  VEQN+P   
Sbjct: 309 NDNATGVEQNIPQEQ 323


>gi|284041509|ref|YP_003391849.1| flagellar M-ring protein FliF [Conexibacter woesei DSM 14684]
 gi|283945730|gb|ADB48474.1| flagellar M-ring protein FliF [Conexibacter woesei DSM 14684]
          Length = 505

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 124/545 (22%), Positives = 215/545 (39%), Gaps = 51/545 (9%)

Query: 14  GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73
             +L     ++LA   L  +++         +P Y  L   ++  D   ++ AL E  I 
Sbjct: 7   LANLSTRGKIVLAGGALAIVVVLFFLFQIATAPSYTTLLTGMDPKDTGEVTAALDERGIA 66

Query: 74  FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
           + + +NG++++V      +ARI LA  GLP  ++N GY++ D     G ++F Q +   R
Sbjct: 67  YELQNNGTALAVQKGQTAQARIALAGAGLP-GNTNDGYKILD-DQKMGTSNFQQNVNYQR 124

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDM--GSFRKIGARPTASVMIRAINPSVYKSAEAI 191
           ALEGEI  TI+ + G+ +A+V +V+PD     F +     TA+V++   +         I
Sbjct: 125 ALEGEIGTTIEEVDGVSSAQVQLVLPDREAQLFAENVNPATAAVLLSGASTLDEGQVRGI 184

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLL--TANEMERNILGKSLSIVQAIQHEIEMNINKAL 249
             LV  +VP L    VT+ DS+G +L  TA     + L    +       +   NI   L
Sbjct: 185 AQLVTNSVPGLKSEKVTITDSSGTMLWPTATSGSSSGLLAKQAAEARYNQQTATNITAML 244

Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309
           A  +G D  +  V A+L+ +      +VY  D     S R  ++   S   +        
Sbjct: 245 ARTVGPDKVQVQVKADLDANEATQDRLVYGRDGTPL-SNRAERETLVSRGGRAGGPAGTA 303

Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369
            N P V   +        +  ++ E  N  +N     T      + R  +AV+V+     
Sbjct: 304 GNNPPVYAGQAGGD---SDYRRESEDENLAVNKTVTRTRIAPGAVNRQQVAVLVDDSV-- 358

Query: 370 EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFM 429
                        + L +I   V +A GI+  RGD +T+ S+ F E     + +      
Sbjct: 359 -----------PAAMLPQIRDAVMSAAGIDEDRGDVLTLGSIPFAELPRPAASSPVDDIW 407

Query: 430 DILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE-VGGKSILSPPPISSA 488
           D  +R+    + ALVFL        L    LR+  N   A +   +              
Sbjct: 408 DY-ARYALLGMAALVFLA-------LVARQLRKRENETLAGEPTWLREIESPRTLAELER 459

Query: 489 VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRK 548
               + P   + L S                       + +++  ++E + ER A+ +R 
Sbjct: 460 FEEPVAPTQVLPLRSPENA-------------------ARMQVEELVERDPERVAQHVRA 500

Query: 549 WARSE 553
           W + +
Sbjct: 501 WMQED 505


>gi|332187937|ref|ZP_08389670.1| flagellar M-ring protein FliF [Sphingomonas sp. S17]
 gi|332012098|gb|EGI54170.1| flagellar M-ring protein FliF [Sphingomonas sp. S17]
          Length = 580

 Score =  303 bits (776), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 113/537 (21%), Positives = 217/537 (40%), Gaps = 43/537 (8%)

Query: 44  NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP 103
           +SP    L+  L  +D   ++ ALS ANI  +I+D   +++V      KAR+ LA QGLP
Sbjct: 63  SSPPQKTLFENLSDADKQAVTTALSAANIKSKINDGTGALTVNEEDYSKARMLLAGQGLP 122

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
             +   GY + D++   G++  ++     +A E E+AR+I+ I  +  ARVH+ MP+   
Sbjct: 123 KQAP-GGYAILDQL-PMGVSRAVEGERLRQARESELARSIEEIDAVAEARVHLAMPEASV 180

Query: 164 FRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-AN 220
           F +  A P+ASV+++            ++I +LVA++VP +   DVTV+D  G LL+   
Sbjct: 181 FVRDKASPSASVVLKLNAGRALSEAQVQSIINLVASSVPGMKPEDVTVVDQMGGLLSKKG 240

Query: 221 EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP 280
               +   + +   + ++ +    + + L   +G  NF + V A++N+D        YD 
Sbjct: 241 ADGASGDDRRIDFQRRLEEKYRTQLIQLLTPLVGAGNFTAEVQADVNLDETSATSERYDK 300

Query: 281 DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSD--------------------RKV 320
           D    R+   +    + + + P        N P  +                        
Sbjct: 301 DG-ALRAETGNWTGNQKDPTPPGGIPGALSNTPPPASTLQQPQAANGANGAPPADGKPVA 359

Query: 321 PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380
             P           Q  Y++N +   T      ++RL++AV++            A   +
Sbjct: 360 GGPGLNPEKQSDAFQRAYDLNKQVSVTRAAPGSIKRLTVAVLLRD---------PATGKR 410

Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS-GTVQVSFMDILSRHFATV 439
               + +I+ +V +A G + +R D +T+ S  F +  + +       S++ I++R+   +
Sbjct: 411 SQMEITQISDLVKSAVGFDQQRNDNVTVISRKFADAGVEDKRAWYDNSWLPIVARNATAL 470

Query: 440 INALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNI 499
           + AL+ L+         +  L +       +        + +    ++A   G    D  
Sbjct: 471 VIALLVLLLG-------VRPLVKAMTKKKDEAEAAKALPMGAADGTATAAQGGAPRVDAD 523

Query: 500 ALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIED 556
                 Q     +  L     +       +++      N  R A  +R   RSE + 
Sbjct: 524 GQPLPEQIAIQPAVTLDEIEETNNFDDRIVKVRGFTRDNPARAALAIRDMIRSEAQS 580


>gi|327478787|gb|AEA82097.1| flagellar MS-ring protein [Pseudomonas stutzeri DSM 4166]
          Length = 558

 Score =  303 bits (776), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 132/569 (23%), Positives = 234/569 (41%), Gaps = 31/569 (5%)

Query: 3   ILDQLLQFF-KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           +L +L     + G  L     L   +VI   + + +A   + ++  +  L+   E     
Sbjct: 1   MLQKLKSRLPEGGLQLDPRVTLAGMAVIAAALAVAVAFYLWRDNGSFRPLHGAGESFPAA 60

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            +   L    + +RI      I V    + +AR+ L A+G+   +  +GYELFDK    G
Sbjct: 61  EVMQVLDGEALQYRIHPQSGQILVREDQLARARLLLNAKGV-KVAQPAGYELFDKEEPLG 119

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPT-ASVMIRAI 180
            + F+Q++   R+LEGE+ART+ ++ G+  ARVH+   +  SF      P+ ASVM++  
Sbjct: 120 TSQFVQDVRLKRSLEGELARTVMALKGVQQARVHLAQEENSSFVVSKRAPSKASVMLQLE 179

Query: 181 NP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQ 238
                      AI +LVA +VPNL   DV V+D  G LL+          ++   V+  Q
Sbjct: 180 PGYKLSSDQVGAIVNLVANSVPNLKPEDVGVVDQYGALLSRGLNVGGGPAQNWQAVEDYQ 239

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
            +   NI + LA  LG+ NFR +V A+++   ++     Y  D+   R+  L  ++    
Sbjct: 240 QKAAANIEQVLAPVLGLGNFRISVAADIDFSQKEETFQSYG-DTPRLRNEVLRNESALDR 298

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLEN----TDKKEEQSNYEINTKSIATTHDNYKL 354
            +         + MP   + +     + EN    + ++E     + +   +   H  + L
Sbjct: 299 LALGVPGSLSNRPMPPAPEGEEAQQPATENKGATSLREESTRQMDYDQSVVHVRHAGFAL 358

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
            + S+AVV+N     E        G  D   AE+  +V +A G    RGD ++++ + F 
Sbjct: 359 RQQSVAVVLNSAAAPE-------GGWTDEARAELEAMVRSAVGFKQERGDLLSLSVLPFA 411

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
              +     V   + +      A V   +  L+  LL+  +   A+R L   + A   + 
Sbjct: 412 --AVEPIEQVVPWWENSQVHALAKV--GVAGLIALLLLLIVVRPAVRNLTQRNVAALPQR 467

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
            G       P + A   G   +   AL S  +    H     + ++          L   
Sbjct: 468 EGLEGSLVEPSAPAALEG---DSRPALASPREPGGPHIFGELNPLSEIRLPAPGSGLELQ 524

Query: 535 IE-------INEERFAKILRKWARSEIED 556
           IE        + ER +++++ W      D
Sbjct: 525 IEHLQMLAKNDPERVSEVIKHWIGRNERD 553


>gi|288550127|ref|ZP_05969368.2| flagellar M-ring protein FliF [Enterobacter cancerogenus ATCC
           35316]
 gi|288316307|gb|EFC55245.1| flagellar M-ring protein FliF [Enterobacter cancerogenus ATCC
           35316]
          Length = 533

 Score =  303 bits (776), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 122/556 (21%), Positives = 225/556 (40%), Gaps = 42/556 (7%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           +    V+LV  ++F     + ++  Y  LY   E   V ++   L   +I +RI+ +   
Sbjct: 1   MAAGGVLLVAAIVF---SLWRSNQGYVALYGSDEKLPVAQVVEVLGAESIAYRINPDNGQ 57

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP   + +AR+ LAA+G+ ++    GYEL DK    G + F+Q +   R+LEGE+AR+
Sbjct: 58  ILVPEDKLPRARMALAAKGI-TAVMPDGYELMDKDEMLGSSQFVQNVRYKRSLEGELARS 116

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAINP--SVYKSAEAIRHLVAAAV 199
           I ++  +  ARVH+ + +  SF        +ASVM++         +   AI  LVA +V
Sbjct: 117 IMALDPVENARVHLGLSESSSFVMTNKPQSSASVMLQLRYGKHLDEQQVAAIVQLVAGSV 176

Query: 200 PNLDMGDVTVLDSTGKLLTANEMERNILGKSL----SIVQAIQHEIEMNINKALAAFLGV 255
           P +  G V V+D  G LL+ N  +      S+     +++ I++E   NI   L+   G 
Sbjct: 177 PGMQPGSVRVVDQAGNLLSENGQQGGTSMASIRQGRDVIERIKNETTNNIAALLSPLFGN 236

Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS-ETSQPESAVTVEQNM-- 312
           +NFR +V   ++M + +  +     + +V       ++         P S      N   
Sbjct: 237 ENFRISVTPTVDMSSVEETQERLGKEPQVSDENISHENTTNELAMGIPGSLSNRPVNQPA 296

Query: 313 ---------PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
                       +  +         + + +EQ  Y  +       H  YKLE+L +AV +
Sbjct: 297 PATPPMAANAQTAQTETQNRTPSSLSSRSQEQRKYAFDRDIRHIRHPGYKLEKLRVAVAL 356

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           N+                   L  + ++V  A GI   RGD++T+  + F++    +   
Sbjct: 357 NQAAKPLAS-------MTPEQLTALTRLVEDAAGIEKDRGDSLTLDRLAFIDR-TPDGFP 408

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
               + D   +++    N  + ++  L + F      +R    +  +   + G +     
Sbjct: 409 EPKWWQDPNIQYWGQ--NGGIGMLILLALLFGLRPLAQRYGRREPVELAAIEGSAQNEAI 466

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
                     M      L       F+    L  + +   +K   L++  + E   ER A
Sbjct: 467 END-------MVTTESGLTGLPGPAFNQDTELPPQSSGLETKVEYLQM--LAENETERMA 517

Query: 544 KILRKWARSEIEDRYT 559
           ++L++W  S      T
Sbjct: 518 EVLKQWINSNERTDNT 533


>gi|148554208|ref|YP_001261790.1| flagellar M-ring protein FliF [Sphingomonas wittichii RW1]
 gi|148499398|gb|ABQ67652.1| flagellar M-ring protein FliF [Sphingomonas wittichii RW1]
          Length = 578

 Score =  302 bits (774), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 111/530 (20%), Positives = 216/530 (40%), Gaps = 37/530 (6%)

Query: 43  VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL 102
           ++     +L+  +  +D   ++ AL  ANI ++I     +++VP +   +A++ LA QGL
Sbjct: 64  MSGAPQRDLFAGMGDADKAAVAEALKTANIPYQIDRGTGALTVPETSFYQAKMLLAQQGL 123

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162
           P S+ +   +        G +  ++      A E ++ARTI++I  + +A+VH+      
Sbjct: 124 PKSAPDG--DALISSLPLGASRAVEGEKLRTAREMDLARTIEAIDAVESAKVHVAAEQPS 181

Query: 163 SFRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN 220
            F +  A+P ASVM+R            +AI HLVA++VPNL    V+++D  G+LL+A+
Sbjct: 182 VFLRDEAKPQASVMLRLRAGRALADSQVQAIVHLVASSVPNLTPDGVSIVDQAGRLLSAS 241

Query: 221 EME--RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
             +       + + I   I+      + K L   +G  NF + V A+++    Q     Y
Sbjct: 242 GGDPMSQASTRQVDIQNKIEQRYLDALTKILTPIVGPGNFTAEVHADVDFTETQATRESY 301

Query: 279 DPDSKVERSIRLS----------KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
             D+ V R  + S               + ++QP +A  V                   N
Sbjct: 302 PKDTAVVRQEQGSWTGDKKDGEATGIPGALSNQPPAASQVAAAPNQTVAAPTAGTTDAAN 361

Query: 329 TDKKEEQSN--YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLA 386
             K  E  N  YE+  +   T      ++RLS+AV + +G                + LA
Sbjct: 362 AGKTSENYNRTYELGREVSVTRAPIGTVKRLSVAVALREGSRK----------FSRAELA 411

Query: 387 EINKIVSAATGINSRRGDTITITSMDF--LENQLFNSGTVQVSFMDILSRHFATVINALV 444
            I  +V  A G +  RGD + +++  F   E+           ++  L+R+ + ++   +
Sbjct: 412 SIETLVRGAIGADQARGDVVALSARSFAVAEDAEVKPNWWDAPWVSTLARNLSALLVVAL 471

Query: 445 FLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSS 504
            + G            RR   I++ K       +     P  +  +        +A  + 
Sbjct: 472 LVFGVAKPLL-----KRRAAYIEEKKAALDAMAASGGRLPQGTNPSIRAEIASEMAQQAL 526

Query: 505 NQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
                  + ++      Y ++   +R  + +  + +R A ++R   R+++
Sbjct: 527 IDPNKPVTLDMIEATPGYANRAELIR--NFVRQDPDRAALVVRDLIRADM 574


>gi|221639466|ref|YP_002525728.1| Flagellar M-ring protein [Rhodobacter sphaeroides KD131]
 gi|221160247|gb|ACM01227.1| Flagellar M-ring protein [Rhodobacter sphaeroides KD131]
          Length = 561

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 121/572 (21%), Positives = 226/572 (39%), Gaps = 43/572 (7%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            +LDQ+ +F          R  + A +IL   +L +A    +  P    LY  L  ++  
Sbjct: 14  GMLDQIRRF----GDQPGLRRAMPAILILAVTVLALAGWILLREPARVTLYPGLPEAEKA 69

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           R+  +L+   I   I +    ++VP +   +AR+ LAAQGLP    +    L D     G
Sbjct: 70  RVIDSLTGGGIAAVIDERTGEVAVPGADYHRARMLLAAQGLPQGLPDGNALLSDL--PMG 127

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
            +  ++     +A E ++AR+I  IS + AARVH+ +P+  +F +    P ASV ++ + 
Sbjct: 128 TSKSVETARLRQAQELDLARSITEISAVSAARVHLALPERSAFLRESQPPRASVFLQIVP 187

Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAI 237
                    EAI +LV+++VP +   DVTV+D  G+LL+    +    +  + L     +
Sbjct: 188 GRTLDGAQVEAIVNLVSSSVPGMARQDVTVVDQMGRLLSRGSDDPAVLLNDRQLQHRVQL 247

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           +      I   L    G  N    V  +++   Q+IRE   DPD     + +   +   +
Sbjct: 248 ETLYRNRIESLLTPIAGPGNLAVQVTIDMDFTRQEIREEQVDPDRTALLAEQSQIEE--T 305

Query: 298 ETSQPESAVTVEQNMP--------HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
              Q         N P                   +   +  +    N+E++ K   T  
Sbjct: 306 ADPQARGIPGAVSNSPPPEAALEAGAPPTAAGEAAAPMRSRSQNSTRNFEVSRKVETTLP 365

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL--AEINKIVSAATGINSRRGDTIT 407
              ++ R+S AVVV           +A    +      A++ ++  +A G ++ RGD +T
Sbjct: 366 ATARIARVSAAVVVRAQPQPAATDPAAPPPPLLPEALKADLERLTRSAVGFDADRGDVVT 425

Query: 408 ITSMDFLENQLFNS-GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
           IT+  FL+  +  + G     ++  L+R    +    V            L  +R + N 
Sbjct: 426 ITAQPFLDTVVPEASGWSAEPWLADLARQGFLLAALAVV----------ALGVVRPILNR 475

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI--NSYVS 524
                         +         T +   +  +LD     + +    L   +   +   
Sbjct: 476 --------VLLPAPAAAGALPLGETAVEVGEGESLDDVRARLKARQGALTKNMLDAARSH 527

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIED 556
           ++  L +  ++E +E R A  +R+   +E++ 
Sbjct: 528 EEQILVIRKLVEEDEGRIATTIRQMIAAELDT 559


>gi|323341386|ref|ZP_08081630.1| putative flagellar M-ring protein fliF [Lactobacillus ruminis ATCC
           25644]
 gi|323091263|gb|EFZ33891.1| putative flagellar M-ring protein fliF [Lactobacillus ruminis ATCC
           25644]
          Length = 537

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 114/561 (20%), Positives = 218/561 (38%), Gaps = 43/561 (7%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            + D L       + L R   + +   ++    +     +      Y  L+  L  +D  
Sbjct: 3   KVKDALEALKAKWSELSRLVKIAIVLGVISLFAIIGTVYYMNTRVEYSVLFSNLSEADAG 62

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG-LPSSSSNSGYELFDKVNSF 120
            IS  L   NI ++++D+G +I V  + V + RI LA    LPSSS   G+ELFD   S 
Sbjct: 63  TISQDLDSQNIKYKLADDGKTIMVDKTKVDQYRIDLAVDNKLPSSSK--GFELFDSA-SM 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD-MGSF-RKIGARPTASVMIR 178
             T   ++I   RAL GE+  +I ++  +  A+V++ +P     F      +  AS+++ 
Sbjct: 120 MTTDEDRKIMYQRALTGELENSIAALDDVDKAKVNLTIPKSDNVFDNSTSKKAKASIVLT 179

Query: 179 AINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-----ERNILGKSLS 232
               S+ K   + I  L   AV  LD  +V V+D TGK+L  NE        +   K + 
Sbjct: 180 LKGTSISKDAVQGIVALTTGAVQGLDKKNVKVVDQTGKILNKNEEDDASDSSSATSKYMK 239

Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292
           +    + ++E  I   +   +G    +++V  +LN D  + +   Y   +   RS  +  
Sbjct: 240 LKSQYEKQMEKKITGLIEPVVGKGKVKASVNVDLNFDAVEKKITNYS--NPQIRSENVQA 297

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
             +++E  Q ++   V  N+ +V+        S           N E+NT++    +   
Sbjct: 298 SGKQAEIKQAQTG-QVNDNVDNVTGDANNDNASYN------RTVNNELNTETTKVINAPG 350

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
            + R++ +VV+N                       I K++  A G + +RGDT+++ +++
Sbjct: 351 SINRMTSSVVINGD-------------LSAGDARNIRKLIQGALGYDKQRGDTVSVQAVN 397

Query: 413 FLENQLFNSGTV-QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471
           F   +     TV +             +I A V  +GT  + FL +   RRL   ++   
Sbjct: 398 FARAKSTKKKTVAKKPVKKTNWVLIGALIAAGVLTLGT--IIFLVIRRRRRLAEEEEEYY 455

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
            +     +                 D               +  ++     ++  ++ R 
Sbjct: 456 DDDYDVDVTDEGEEEEEAEEAAEELD------PEILAEQERQRKETETKRKIAVSTEQRA 509

Query: 532 LHMIEINEERFAKILRKWARS 552
                 + +  A ++  W + 
Sbjct: 510 KEYATKHPDVVADLISAWVKE 530


>gi|11095419|gb|AAG29859.1|AF313764_2 flagellar M-Ring protein [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 619

 Score =  300 bits (768), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 118/609 (19%), Positives = 228/609 (37%), Gaps = 81/609 (13%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++++ +  K        +  +    ++    +     F +++P   +LY      D   I
Sbjct: 34  VNKVYERVKDFVQQPAIKRSLPLMGLISLTAIGALIWFLLSAPTQRDLYPGARDGDRASI 93

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           + AL    I + I      I+V      KAR  LA QGLP S+ +  +         G +
Sbjct: 94  ARALETGGIHYNIKRGNGVITVSEKEFYKARDLLAQQGLPKSAPDGVH--VISSLPLGAS 151

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
             ++      A E  +ARTI++I  +  ARVHI  P    F +     TASVM++ +   
Sbjct: 152 RAVEAKRLRAAREVVLARTIETIDVVNQARVHIAEPQPSPFVREQVHGTASVMLKLMTGR 211

Query: 184 VYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQAIQHE 240
                  +AI++LVAA+VP +    V+V+D  G LL+A +  + +I  + L + Q ++  
Sbjct: 212 NLSNAQVQAIQNLVAASVPGMAPEAVSVVDQAGHLLSATSNADNDINDRQLRLQQTVEAR 271

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               +NK L   LG +N+ + V  +L+    Q     Y P     RS   S +       
Sbjct: 272 YMDALNKLLVPLLGENNYTAEVHTDLDFTESQATRESY-PKEGSLRSESGSWNKDGGPD- 329

Query: 301 QPESAVTVEQNMPHVSDRKV---------------------------------------- 320
           Q         NMP                                               
Sbjct: 330 QNGGIPGAMSNMPPTPANPTQNPPPNLQPPAQPNNQQNAQNGQQGQNAQGQPNGQNAQQG 389

Query: 321 ---------PLPRSLENTDKKEEQSN--YEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369
                    P   + +   +  E  N  YE+  +     +    ++R+S+A+ + +    
Sbjct: 390 QNARAPGSVPAETAQQAQARTSENFNRYYELGREVSVIRNPTGSVKRVSVAIALRQINHG 449

Query: 370 EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFM 429
                   +      +A++ K++  A G ++ RGD + I+S DF+   +F+    Q S++
Sbjct: 450 --------KPPSPEQVAQLEKLIKGAIGFDASRGDVVAISSSDFMGGSVFSMPWYQNSWV 501

Query: 430 DILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAV 489
            +L+R+ +        LV  L++       L+      + ++        L    I + +
Sbjct: 502 PLLARNLS------ALLVAALVIFGFARPFLKARAEAAERRRLAENPLPQLEQTNIDNLI 555

Query: 490 TTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549
             G  P +     +   D+   +   ++R++          + H ++ +  R A ++   
Sbjct: 556 AEGEEPAEEAGSQAITLDMIDAAPGYKARVDL---------VRHFVKQDPARAALVVHDM 606

Query: 550 ARSEIEDRY 558
            RS+++   
Sbjct: 607 MRSDLKSLE 615


>gi|152965616|ref|YP_001361400.1| flagellar M-ring protein FliF [Kineococcus radiotolerans SRS30216]
 gi|151360133|gb|ABS03136.1| flagellar M-ring protein FliF [Kineococcus radiotolerans SRS30216]
          Length = 537

 Score =  300 bits (768), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 113/559 (20%), Positives = 220/559 (39%), Gaps = 41/559 (7%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           AI++    F     +    +  ++ +V++  +   +    + ++P Y  ++  L  +D N
Sbjct: 9   AIVENAKNFVSGFRTFSTGQKAVVIAVVVALLGGAVLFSRWASTPSYTPMFSNLSGADAN 68

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            +   L    + ++++DNG++I VP+ +V   R+ ++  GLP + + SGY L        
Sbjct: 69  AMVEKLDADGVPYQLADNGATILVPADVVDSERLAMSGAGLP-ADTGSGYTLL-TEQKVT 126

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
            + FMQ+ T  + L+GE+  TI+SI G+ +A V++ +P    F       TASV+++   
Sbjct: 127 TSEFMQQKTYQKVLQGELESTIESIDGVESAVVNLAIPQKDVFLDEQDPTTASVLVKLRP 186

Query: 182 PSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQH 239
                     +I +LV+  V  +D  +V+V+D  G  L+ +    +              
Sbjct: 187 GKELSNDQVTSIVNLVSGGVEGMDPANVSVVDDKGNTLSTDGSGSSA---QQEKTSDYNA 243

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY-DPDSKVERSIRLSKDAQRSE 298
               ++   L +  G  N ++ V A LN D +      Y  P      +   +++     
Sbjct: 244 SASADLQTFLESVYGKGNVKATVKATLNYDDKTESSTTYSQPQEIDPLAEAKTEETYEGT 303

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
           T    + V    N+            +     KK E +N  IN     T     KLE+ +
Sbjct: 304 TGAAATGVLGPDNI----AVPGGDAENGGGYAKKSETNNNAINKIDTVTKQAPGKLEKQT 359

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           ++VVVN G                + + +I +IV+ A GI++ RGD++++       +  
Sbjct: 360 VSVVVNAGAKGAA---------GAADVNQITQIVNQAAGIDATRGDSVSVVKT--AFDDT 408

Query: 419 FNSGTVQVSFMDILSRHFATVIN-----ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
             +           +    T+I      AL  LV  +LV  L     R++  +D      
Sbjct: 409 AAAEAAAALAAADEADQQTTLIGYAKTAALGLLVLIMLVVILVAFRRRKVETVD------ 462

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
                +L   P+     TGL  ++ +   +   +                +      ++ 
Sbjct: 463 -----VLDVEPLQLGDITGL--DEELKEIAPVVERPVALEAAPVDPALEAAAARRTEVVE 515

Query: 534 MIEINEERFAKILRKWARS 552
           ++    E  A++LR W   
Sbjct: 516 LVSRQPEEVAELLRGWLAD 534


>gi|261216584|ref|ZP_05930865.1| flagellar M-ring protein FliF [Brucella ceti M13/05/1]
 gi|261319454|ref|ZP_05958651.1| flagellar M-ring protein FliF [Brucella ceti M644/93/1]
 gi|260921673|gb|EEX88241.1| flagellar M-ring protein FliF [Brucella ceti M13/05/1]
 gi|261292144|gb|EEX95640.1| flagellar M-ring protein FliF [Brucella ceti M644/93/1]
          Length = 332

 Score =  300 bits (768), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 149/336 (44%), Positives = 217/336 (64%), Gaps = 5/336 (1%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +++QL     +   LG  +++ L  V    +   +    ++  P Y+ LYV L   DVNR
Sbjct: 1   MIEQLKG---TLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVNR 57

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           + +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S GL
Sbjct: 58  MGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGL 116

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           TSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA   
Sbjct: 117 TSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGG 176

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEI 241
              +SA++IR LV AAVP+LD   VTVLD+ G LL +A E        + S+ Q +   +
Sbjct: 177 FSAESAQSIRQLVTAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASHV 236

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           + +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  ++
Sbjct: 237 DDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNNR 296

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSN 337
            ++A  VEQN+P    +      S E TD++EE +N
Sbjct: 297 NDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTN 332


>gi|52080223|ref|YP_079014.1| flagellar MS-ring protein [Bacillus licheniformis ATCC 14580]
 gi|52785600|ref|YP_091429.1| flagellar MS-ring protein [Bacillus licheniformis ATCC 14580]
 gi|319645998|ref|ZP_08000228.1| FliF protein [Bacillus sp. BT1B_CT2]
 gi|52003434|gb|AAU23376.1| flagellar basal-body M-ring protein [Bacillus licheniformis ATCC
           14580]
 gi|52348102|gb|AAU40736.1| FliF [Bacillus licheniformis ATCC 14580]
 gi|317391748|gb|EFV72545.1| FliF protein [Bacillus sp. BT1B_CT2]
          Length = 533

 Score =  300 bits (768), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 105/573 (18%), Positives = 208/573 (36%), Gaps = 65/573 (11%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           + I  ++  F+K+ + L +   ++L  ++ + ++L +      +S     LY  L   + 
Sbjct: 6   LQIKTKITDFWKNRSKLQK---ILLIGIVALAVILSIIIGIVASSNKMVPLYKDLSAEET 62

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +I   L E  I   ++ +GS I VP   V + ++ LAA+GLP S S   Y  F +   F
Sbjct: 63  GQIKQVLDEKGIPSEVATDGSVIKVPEEKVDELKVDLAAEGLPKSGS-IDYSFFGENAGF 121

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRA 179
           G+T    ++ +V+A + E++  I+ I GI  ++V I +P    F        +AS++++ 
Sbjct: 122 GMTDNEFDVLKVKATQTELSNLIKGIDGIKDSKVMINLPKESVFVGEEKPEASASIVLQV 181

Query: 180 INPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ-- 235
                        + HLV+ +VPNLD  ++ ++D           E      S S  +  
Sbjct: 182 KPGHTLDQNEINGLYHLVSKSVPNLDPKNIVIMDQNSTYYDQTGKESGSYADSYSSQREV 241

Query: 236 --AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD-----SKVERSI 288
              I+ +++  I   L   +G D    +V ++++   +   E + +P        +  S 
Sbjct: 242 KAQIEKDLQRQIQTMLGTMMGQDKVVVSVTSDIDFTKENRTEDLVEPVDKENMEGITVSA 301

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
               +    + +Q        +N    +  +        + +K EE+ N E+N       
Sbjct: 302 ERVSETYSGQGAQAGGVNGTGEND-VTNYAETEGGTGNGDYEKSEERINNEVNRIHKEIA 360

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG--------INS 400
              YK+  L + V+V            A+  + D     ++ IV  +           + 
Sbjct: 361 ESPYKIRDLGVQVMVEPPDANNPQSLPAE--REDDIKKILSTIVKTSIDKNYEEEPLTDE 418

Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460
              + I ++   F   Q  + GT            +A +      +    L+ +L     
Sbjct: 419 DVENKIVVSVQSFDGKQTIDEGTETGGIP-----MWAYIAGGAALVAVIGLIIWLVRRRK 473

Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520
            R    ++                          P + I +   N +  +          
Sbjct: 474 NRDDEYEEEWY---------------------ETPQEPIRVADVNNEKETEE-------- 504

Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                    +L  M +   E FAK+LR W   +
Sbjct: 505 ----TVRRKQLEKMAKDKPEEFAKLLRSWLTED 533


>gi|77463624|ref|YP_353128.1| flagellar FliF M-ring protein [Rhodobacter sphaeroides 2.4.1]
 gi|77388042|gb|ABA79227.1| Flagellar FliF M-ring protein [Rhodobacter sphaeroides 2.4.1]
          Length = 570

 Score =  300 bits (767), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 119/572 (20%), Positives = 227/572 (39%), Gaps = 43/572 (7%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            +++Q+ +F          R  + A +IL   +L +A    +  P    LY  L  ++  
Sbjct: 23  GMVEQIRRF----GDQPGLRRAMPAILILAVTVLALAGWILLREPARVTLYPGLPEAEKA 78

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           R+  +L+   I   I +    ++VP +   +AR+ LAAQGLP    +    L D     G
Sbjct: 79  RVIDSLTGGGIAAVIDERTGEVAVPGADYHRARMLLAAQGLPQGLPDGNALLSDL--PMG 136

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
            +  ++     +A E ++AR+I  IS + AARVH+ +P+  +F +    P ASV ++ + 
Sbjct: 137 TSKSVETARLRQAQELDLARSITEISAVSAARVHLALPERSAFLRESQPPRASVFLQIVP 196

Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAI 237
                    EAI +LV+++VP +   DVTV+D  G+LL+    +    +  + L     +
Sbjct: 197 GRTLDGAQVEAIVNLVSSSVPGMARQDVTVVDQMGRLLSRGSDDPAVLLNDRQLQHRVQL 256

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           +      I   L    G  N    V  +++   Q+IRE   DPD     + +   +   +
Sbjct: 257 ETLYRNRIESLLTPIAGPGNLAVQVTIDMDFTRQEIREEQVDPDRTALLAEQSQIEE--T 314

Query: 298 ETSQPESAVTVEQNMP--------HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
              Q         N P                   +   +  +    N+E++ K   T  
Sbjct: 315 ADPQARGIPGAVSNSPPPEAALEAGAPPTAAGEAATPMRSRSQNSTRNFEVSRKVETTLP 374

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL--AEINKIVSAATGINSRRGDTIT 407
              ++ R+S AVVV           +A    +      A++ ++  +A G ++ RGD +T
Sbjct: 375 ATARIARVSAAVVVRAQPQPAATDPAAPPPPLLPEALKADLERLTRSAVGFDADRGDVVT 434

Query: 408 ITSMDFLENQLFNS-GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
           IT+  FL+  +  + G     ++  L+R    +    V          + L  +R + N 
Sbjct: 435 ITAQPFLDTVVPEASGWSAEPWLADLARQGFLLAALAV----------VALGVVRPILNR 484

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI--NSYVS 524
                         +         T +   +  +LD     + +    L   +   +   
Sbjct: 485 --------VLLPAPAAAGALPLGETAVEVGEGESLDDVRARLKARQGALTKNMLDAARSH 536

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIED 556
           ++  L +  ++E +E R A  +R+   +E++ 
Sbjct: 537 EEQILVIRKLVEEDEGRIATTIRQMIAAELDT 568


>gi|254487125|ref|ZP_05100330.1| flagellar M-ring protein FliF, putative [Roseobacter sp. GAI101]
 gi|214043994|gb|EEB84632.1| flagellar M-ring protein FliF, putative [Roseobacter sp. GAI101]
          Length = 422

 Score =  300 bits (767), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 118/412 (28%), Positives = 192/412 (46%), Gaps = 15/412 (3%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           AI+ Q L  +   T     R L + +  L      +A    V SP    LY  LE     
Sbjct: 3   AIVQQFLNIWAGLTF---RRQLTIVAATLAMFFGVLAMSKMVASPTLTLLYAGLESGAAG 59

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            +  AL +  + + +   G SI V +    + R+ LA++GLP++  N GYEL D +  FG
Sbjct: 60  DVVRALEQRGVVYEVR--GGSIFVDAKARDELRLTLASEGLPANG-NRGYELLDNLTGFG 116

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
            TS M +    RA EGE+ARTI +   I  ARVHI       F++ G  P ASV +    
Sbjct: 117 TTSQMFDAAYWRAKEGELARTIVANPQISMARVHIAGTGSNPFQR-GVVPKASVSLTPNG 175

Query: 182 PS-VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240
                  A+A+R LVA+AV  L   DV V+D+ G L+ +++                   
Sbjct: 176 GEISAAEAKAVRFLVASAVAGLSPDDVAVIDANGSLIGSSDDAMPTSQGDDKAEM----- 230

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
            +  + + L A +G+ N    V  +   +++ +RE  +DP+ +V  S    ++   S + 
Sbjct: 231 FKEKVQRILEARVGLGNAIVEVSVDTETESESVRERRFDPEGRVAISTDT-EERSNSSSD 289

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
                VTV  N+P  ++ +     S  +  +  E+ NYE++            ++R+++A
Sbjct: 290 AGSGDVTVASNLP-SNNGQPGGDSSSSSNSETRERVNYEVSETEREIVRAPGAVKRITVA 348

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
           V++N    T+  G    Q + D+ L  + ++VS+A G ++ RGD ITI SM 
Sbjct: 349 VLINDAIATDESGVETSQPRDDTELEALRELVSSAVGFDAERGDIITIKSMA 400


>gi|68164520|gb|AAY87249.1| predicted flagellar basal-body M-ring protein [uncultured bacterium
           BAC17H8]
          Length = 573

 Score =  300 bits (767), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 118/568 (20%), Positives = 229/568 (40%), Gaps = 34/568 (5%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           MA+L +L      G    R  +  +A + +  I L          P    LY  L  ++ 
Sbjct: 25  MAVLYRLT-----GGQSLRQVLPAVAGITVAVIGLVFFVV--SQQPERTTLYASLPEAEK 77

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            R+  AL  A +D  +  +   + VP      +R+ LAAQGLP+S  +    L D     
Sbjct: 78  ARVVDALKNAGVDVVLDPSTGDVIVPVKDYHSSRMTLAAQGLPASIPDGYDSLSDI--PM 135

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           G +  ++ +   ++ E E+AR+I  I G+V ARVH+ +P+   F +    PTASV ++  
Sbjct: 136 GSSRSVENVRLKQSQEIELARSISEIDGLVTARVHLAIPEKSVFARSATPPTASVFVQME 195

Query: 181 NPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQA 236
           N      +  +AI HLV+++VP +   DVTV+D  G LL+    +    +    L     
Sbjct: 196 NGRSLSRQQVDAIVHLVSSSVPFMAKNDVTVVDQYGNLLSRPPQDSAGMMSDAQLEHRIR 255

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           ++      +   ++  +G  N  + V  +++    ++ E V DP+    RS + S  ++ 
Sbjct: 256 LEEIYRNRVIALVSPIVGAGNVTAQVNLDIDFTRSEVTEEVMDPEGTALRSEQSS--SES 313

Query: 297 SETSQPESAVTVEQNMPHVS---DRKVPLPRSLENTDK---KEEQSNYEINTKSIATTHD 350
           S     +       N        D +  +  S  N ++   +    NYE++     T   
Sbjct: 314 SAEIIAKGVPGATSNRAPTQTDIDTQQNVDSSDPNANRARSQSSTRNYEVSRTVSTTQRP 373

Query: 351 NYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
           + ++  +  AV+V +  +     G        +  L EI  +V+ A GI+  RGD +T++
Sbjct: 374 SSQITGIQAAVLVREMEVMNAETGLMEVSEIPEEKLKEIEALVANAIGIDDGRGDRLTVS 433

Query: 410 SMDFLEN-QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
           S  F+   +        + +  ++ R   T++   V ++G +          R L N   
Sbjct: 434 SSTFVSALEGIKKPWYDMDWAIMIMRQGLTILIMAVVVLGVI----------RPLINRVM 483

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
                 G    +        + T  +       D   +     +      +++  +    
Sbjct: 484 VPTAAGGPGEAIVTADDDVDLDTVEIQEGESLEDIKAKLKPKKAAISAEMLDTANTYDDK 543

Query: 529 LRLLHMIEINE-ERFAKILRKWARSEIE 555
           + ++ MI  +E  R + + +   + +++
Sbjct: 544 VAVIRMIVSDEAGRVSNVFKSMMQQDMD 571


>gi|332558480|ref|ZP_08412802.1| FliF [Rhodobacter sphaeroides WS8N]
 gi|2494549|sp|Q53151|FLIF_RHOSH RecName: Full=Flagellar M-ring protein
 gi|1419203|emb|CAA67251.1| FliF protein [Rhodobacter sphaeroides]
 gi|332276192|gb|EGJ21507.1| FliF [Rhodobacter sphaeroides WS8N]
          Length = 570

 Score =  299 bits (766), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 121/572 (21%), Positives = 227/572 (39%), Gaps = 43/572 (7%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            +LDQ+ +F          R  + A +IL   +L +A    +  P    LY  L  ++  
Sbjct: 23  GMLDQIRRF----GDQPGLRRAMPAILILAVTVLALAGWILLREPARVTLYPGLPEAEKA 78

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           R+  +L+   I   I +    ++VP +   +AR+ LAAQGLP    +    L D     G
Sbjct: 79  RVIDSLTGGGIAAVIDERTGEVAVPGAEYHRARMLLAAQGLPQGLPDGNALLSDL--PMG 136

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
            +  ++     +A E ++AR+I  IS + AARVH+ +P+  +F +    P ASV ++ + 
Sbjct: 137 TSKSVETARLRQAQELDLARSITEISAVSAARVHLALPERSAFLRESQPPRASVFLQIVP 196

Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAI 237
                    EAI +LV+++VP +   DVTV+D  G+LL+    +    +  + L     +
Sbjct: 197 GRTLDGAQVEAIVNLVSSSVPGMARQDVTVVDQMGRLLSRGSDDPAVLLNDRQLQHRVQL 256

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           +      I   L    G  N    V  +++   Q+IRE   DPD     + +   +   +
Sbjct: 257 ETLYRNRIESLLTPIAGPGNLAVQVTIDMDFTRQEIREEQVDPDRTALLAEQSQIEE--T 314

Query: 298 ETSQPESAVTVEQNMP--------HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
              Q         N P                   +   +  +    N+E++ K   T  
Sbjct: 315 ADPQARGIPGAVSNSPPPEAALEAGAPPTAAGEAAAPMRSRSQNSTRNFEVSRKVETTLP 374

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL--AEINKIVSAATGINSRRGDTIT 407
              ++ R+S AVVV           +A    +      A++ ++  +A G ++ RGD +T
Sbjct: 375 ATARIARVSAAVVVRAQPQPAATDPAAPPPPLLPEALKADLERLTRSAVGFDADRGDVVT 434

Query: 408 ITSMDFLENQLFNS-GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
           IT+  FL+  +  + G     ++  L+R    +    V          + L  +R + N 
Sbjct: 435 ITAQPFLDTVVPEASGWSAEPWVADLARQGFLLAALAV----------VALGVVRPILNR 484

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI--NSYVS 524
                         +         T +   +  +LD     + +    L   +   +   
Sbjct: 485 --------VLLPAPAAAGALPLGETAVEVGEGESLDDVRARLKARQGALTKNMLDAARSH 536

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIED 556
           ++  L +  ++E +E R A  +R+   +E++ 
Sbjct: 537 EEQILVIRKLVEEDEGRIATTIRQMIAAELDT 568


>gi|206895778|ref|YP_002246683.1| flagellar M-ring protein FliF [Coprothermobacter proteolyticus DSM
           5265]
 gi|206738395|gb|ACI17473.1| flagellar M-ring protein FliF [Coprothermobacter proteolyticus DSM
           5265]
          Length = 521

 Score =  299 bits (766), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 112/554 (20%), Positives = 215/554 (38%), Gaps = 45/554 (8%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +L  L+ F+K+     +  I+++  V LV I       +++N P Y  L+  L       
Sbjct: 8   VLKDLVNFWKNLEKNQKRNIIVVLVVALVAIG---GLVYYLNRPQYALLFSDLMPEQAQA 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L   N+ +++S +G+SI VP+  V   R+ LA+ GL   S+  GYELFD +++  L
Sbjct: 65  IVSQLESQNVRYKLSSDGASIYVPNDKVTSLRLELASSGLV-GSTKPGYELFDNISNIFL 123

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T   Q+I   RALEGE+ RTI  + G+ +  VH+ +P    +     +     +   + P
Sbjct: 124 TQEEQQIMYQRALEGELERTISGMPGVKSVSVHLSLPQRSLWTVTSTQTAQGAVYLTLKP 183

Query: 183 SVYK---SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQH 239
                    EAIR LVA AV  +   +V + +++  +L  +  +  +    L I + +  
Sbjct: 184 GYSLSANQVEAIRQLVAHAVEGMSPENVVIAEASTGILAGDLAQSGVDKGYLEIKKQLDE 243

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
                I   L    G +N   +   ++ +  Q I+   +   +    S   S  +  S  
Sbjct: 244 LYASKIRSFLGQTFGPENIMVSADVDVEVTKQNIQSETWGNTATKNVSDTESWSSSSSSG 303

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
               +A  V   +P                  +++Q NYEI+           +++ + I
Sbjct: 304 GPVGTATNVPGAIPSYVYTSTGEG---PYNYYRQQQINYEISRTISEIVPQEVEIKNVKI 360

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           A +V+     +    ++           +  ++++A G+++ RGD   +TSM F      
Sbjct: 361 AAIVDSSVFKDYAVTAST----------VESLIASAAGLDNARGDVALVTSMPFASLARE 410

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
                     +   R  A + + +   V  LL+  +    LRR                 
Sbjct: 411 KEAQEAQLLAEAQRR--ARLYSYIAIAVVALLILAMVFILLRRSRR-------------- 454

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
            +P P+ +    G        + S  + +      ++  +           +   ++ + 
Sbjct: 455 TAPAPVPAGAGLGEALGQPRPIISLERPLTPEEEKIKLAMEE---------IQKALQEHP 505

Query: 540 ERFAKILRKWARSE 553
              A ++R W + E
Sbjct: 506 NDVADLVRMWMQEE 519


>gi|239826613|ref|YP_002949237.1| flagellar MS-ring protein [Geobacillus sp. WCH70]
 gi|239806906|gb|ACS23971.1| flagellar M-ring protein FliF [Geobacillus sp. WCH70]
          Length = 527

 Score =  299 bits (765), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 116/574 (20%), Positives = 222/574 (38%), Gaps = 79/574 (13%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L +   F+K  T   + + + +AS+ L  ++  +A  +F     +  LY  L   +  +I
Sbjct: 9   LSRFTLFWKERTK--KQKWIAIASLALFLLITGVAI-YFATRTEFAPLYSNLTPQEAGQI 65

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L +  +   ++DNG++I VP  +V   ++ LAA+G+P+S +   Y  F K  SFG+T
Sbjct: 66  KATLDQRGVKSEVADNGTTIKVPKELVNSLKVDLAAEGIPNSGT-IDYSYFGKNASFGMT 124

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA-RPTASVMIRAINP 182
                + ++ A++ E+A  I+SI G+  A+V I +P    F        +AS++++    
Sbjct: 125 DNEFNVVKLEAMQNELANLIKSIDGVEDAKVMINLPQPSVFASDDQGEASASIVLKTKPG 184

Query: 183 S--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG----KSLSIVQA 236
                +   A+ HLV+ +VPNL   ++ +++   +       E    G        I + 
Sbjct: 185 YQFSDQQIRALYHLVSKSVPNLPTDNIVIMNQFFEYFDLKNNENFSTGTTFATQQEIKKQ 244

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIRLS 291
           I+ +I+  + + L   +G D    +V A+++   +   E +  P     +  +  S++  
Sbjct: 245 IERDIQRQVQQMLGTMMGQDKVVVSVTADVDFTQENREENLVAPVDEKNNEGIAVSVQRI 304

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           K+    + +QP       +N   V   +     +  + ++ EE  N E+N          
Sbjct: 305 KETYSGKGAQPGGVAGTGEN--EVPSYQAGASETNGDYERTEETINNEVNKIKKHIVESP 362

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT---- 407
           YK+  L I V+V           S  Q  ID     +  IV  +   N + G T+T    
Sbjct: 363 YKIRDLGIQVMVEPPNPKNP--NSLPQQTIDDIQKILGTIVRTSI--NKQDGQTLTDQDI 418

Query: 408 -----ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGT---LLVTFLGLHA 459
                ++   F     F      +                 V++VG    +L+  L +  
Sbjct: 419 QNRIVVSVQKFNGKPTFTEPKQTIPMW--------------VYIVGGIGLVLLIALLILL 464

Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519
            RR    ++ ++ ++    +   P I                                  
Sbjct: 465 WRRRKEEEEEEEEDILEPMVQEIPDIHEE------------------------------- 493

Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
           N   S     +L  + +   + FAK+LR W   E
Sbjct: 494 NETESTMRRKQLEKLAKEKPDEFAKLLRTWLSEE 527


>gi|188586017|ref|YP_001917562.1| flagellar M-ring protein FliF [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350704|gb|ACB84974.1| flagellar M-ring protein FliF [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 519

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 122/567 (21%), Positives = 220/567 (38%), Gaps = 69/567 (12%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
              +Q  QF+ +   L + + +  A+ + + I+  +     +    Y  +   L+  D +
Sbjct: 7   NAKNQSQQFWGN---LSKGQKITFATALGLFIIGTLVLSVSMLQTDYTEVARDLDPRDAS 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I+  + +  + ++I D GS I VP     + R+ LA  GLP      GYE  D     G
Sbjct: 64  EIAEMIEDMGVSYQIEDGGSRILVPEDDHDQVRLELAGAGLPRGGV-LGYEELDTQQ-LG 121

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI- 180
           LT   +E+ +  ALEGE+ RTI+    +  ARVH+V+P+   F +      A+V +    
Sbjct: 122 LTESEREMRQKIALEGELVRTIRRYPEVEDARVHLVLPERSIFEETREDSQAAVFLDLEP 181

Query: 181 -NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---------ILGKS 230
                 +   +I +LVA +V  L   +VT+  ++G  + +++ + +          + K 
Sbjct: 182 HRELTEQQISSIVNLVAHSVEGLTPKNVTL--TSGDRMLSDKTQSDDKNSPSAGSEVEKR 239

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERS 287
           LSI +  Q+ ++ ++   L   +G  N  + V AEL+ D  +    +++P   D  +  S
Sbjct: 240 LSIQEEFQNTLQSSVESMLENIVGRGNVTARVNAELDFDEFESFSELFEPVEGDEGILVS 299

Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
           +   ++    E                   ++V       + ++ +E  NYE+N     +
Sbjct: 300 MHREEEFYSGEDVSQGGVPGDPAEGTPEY-QEVTGEGGSFDYERIDETRNYEVNKIEERS 358

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN-SRRGDTI 406
                 L +LS+AV VN             Q   +  +  I  +V  A GIN       I
Sbjct: 359 RLAPGALNKLSVAVAVN-------------QELDEDEMDSIEALVEDAVGINLENENHQI 405

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
           T+  MDF  +                 +  A     +   +G  ++  L L   +    I
Sbjct: 406 TVEQMDFDTSLQDMLAAQHEK-----KQQMAAQQRWITLGIGAAVLVVLALIGRKIYKTI 460

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
            D K+ E               +    M  D  A   +++DI      +Q +I+      
Sbjct: 461 RDRKEIE-------------DRLEREQMVQDQAA---ASEDIEPEVPKVQKQISD----- 499

Query: 527 SDLRLLHMIEINEERFAKILRKWARSE 553
                    E   E FAK+L+ W   E
Sbjct: 500 -------FAEKKPEEFAKVLKAWLAEE 519


>gi|170288525|ref|YP_001738763.1| flagellar M-ring protein FliF [Thermotoga sp. RQ2]
 gi|170176028|gb|ACB09080.1| flagellar M-ring protein FliF [Thermotoga sp. RQ2]
          Length = 532

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 100/474 (21%), Positives = 197/474 (41%), Gaps = 28/474 (5%)

Query: 1   MAILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLE 56
           M I+++L   +K      +S+ R R  ++  + +  ++  +      + PHY  L   L 
Sbjct: 1   MNIVERLRDLWKKIVDMWSSMPRERKFLVGGIGIALVITIVLFAVVTSVPHYRLLVAGLN 60

Query: 57  VSDVNRISVALSEANIDFRISDNGSSISVPSS-MVGKARIHLAAQGLPSSSSNSGYELFD 115
             +   I   L E NI +++S  G  I VP S  V + R+ LA++G+   SS  G+ +  
Sbjct: 61  EDEAGVIIQKLEEMNIPYKVSPGGD-IYVPDSYNVYELRMKLASEGV-LGSSRKGFSIL- 117

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK-IGARPTAS 174
             NSFG TSF +++    AL+ E+ R+I +I G+  ARVH+V+P    + +   A P AS
Sbjct: 118 SENSFGATSFDKQVKYQIALQEELERSIMTIKGVKDARVHLVLPKYTYYVRGEMAEPRAS 177

Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGK 229
           V++          +    I  LV+ AV  L   +V V+D+  + L+     +    +   
Sbjct: 178 VLVVLEPGAELTREQVRGIVELVSGAVEGLKPENVRVVDNYSRSLSDMLETDEGTFLASS 237

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
            L + Q ++   E  I KAL +  G           +N    +     Y+  ++ E  +R
Sbjct: 238 KLELKQQLEKYYESKIKKALESVFGPGRVEVIPDISINWSKIETEMKKYEAPARREGLVR 297

Query: 290 LSK-DAQRSETSQP-ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
             +   ++S+   P       + N+P  +        +    ++    +NYE+N      
Sbjct: 298 SQETQVEKSQNLSPTGGPAGTDSNIPPFTYPSATSEGT-STYERTHTITNYELNEVYQKI 356

Query: 348 THDN-YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG-INSRRGDT 405
             +   ++  LS+AV+++                   + + IN +V    G I S    +
Sbjct: 357 IQNREGEISSLSVAVIIDASSSVLQNNSD--------WSSVINDLVEKGVGSITSSASLS 408

Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA 459
           + +  + F +  +  +   ++  ++   R     +   +    T ++ +L +  
Sbjct: 409 VAVAFLPF-DRSIERALQEELKQIETRRRFILYSVGIALLGFLTFILIYLVIVQ 461


>gi|196247639|ref|ZP_03146341.1| flagellar M-ring protein FliF [Geobacillus sp. G11MC16]
 gi|196212423|gb|EDY07180.1| flagellar M-ring protein FliF [Geobacillus sp. G11MC16]
          Length = 527

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 87/446 (19%), Positives = 175/446 (39%), Gaps = 31/446 (6%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           +   F++  T   + + L +  + +V   + +   FF        LY  L   +  +I  
Sbjct: 11  RARSFWQERTK--KQKWLAIGGIAVVLFSIGIGV-FFATRTEMVPLYSNLTPQEAGQIKA 67

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L    +   ++D G++I VP   V   ++ LAA+G+P+S     Y  F +  SFG+T  
Sbjct: 68  TLDGRGVSAEVADGGTTIKVPKEQVDALKVELAAEGIPNSGV-IDYSFFGQNASFGMTDN 126

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA-RPTASVMIRAINPS- 183
              + +++A++ E+A  +++I G+  A+V I +P    F        +AS+++R      
Sbjct: 127 EFNMVKLKAMQTELANLMKTIDGVEDAKVMINLPQPSVFVSDEKGEASASIVLRTKPGYQ 186

Query: 184 -VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG----KSLSIVQAIQ 238
              +   A+ HLVA +VPNL   ++ +++   +         N  G        I + I+
Sbjct: 187 FSDEQIRALYHLVAKSVPNLSTDNIVIMNQFFEYFDLKNDSGNSTGATFASQQQIKKQIE 246

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIRLSKD 293
            +I+  + + L   +G D    +V A+++   ++  E +  P     D  +  S++  K+
Sbjct: 247 RDIQRQVQQMLGTMMGQDKVVVSVTADVDFTQEKREENLVAPVGEENDEGIAVSVQRIKE 306

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
                 + P        N       +     +  N ++ EE  N E+N          YK
Sbjct: 307 TYAGSGAPPGGTAGTGTN--ETPGYQGASGATNGNYERTEETINNEVNKIKKQIVESPYK 364

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI-NKIVSAAT--G-----INSRRGDT 405
           +  L I V+V      +    ++   +  + + +I   IV  +   G      +      
Sbjct: 365 IRDLGIQVMVEP---PDPDDPNSLTPEAVNDIQKILGTIVRTSIDKGEAQTLTDEDINSR 421

Query: 406 ITITSMDFLENQLFNSGTV--QVSFM 429
           I ++   F     F          + 
Sbjct: 422 IVVSVQKFNGKPTFTEPDPVRPAWWW 447


>gi|150019080|ref|YP_001311334.1| flagellar MS-ring protein [Clostridium beijerinckii NCIMB 8052]
 gi|149905545|gb|ABR36378.1| flagellar M-ring protein FliF [Clostridium beijerinckii NCIMB 8052]
          Length = 522

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 101/529 (19%), Positives = 216/529 (40%), Gaps = 58/529 (10%)

Query: 38  AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97
           +  F+ +S  Y  L+  L+ +D   +  +L+E  +D +I  N ++I VP   V K R+ L
Sbjct: 39  SGIFYSSSNKYQVLFSDLDAADAQTVVNSLNEKKVDTKIDSNTNTIWVPKDQVDKLRLEL 98

Query: 98  AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
           A      +S + GYEL D  +SFG+T    +I +VR  +GE+ +TI+S   +  ARVHI 
Sbjct: 99  AP---TLTSGSKGYELMDSGSSFGMTDEEFKIKKVRMQQGELEKTIKSFPQVEEARVHIT 155

Query: 158 MPDMGSFRKIGARPTASVMIRAINPSV--YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
                 F K      A+V ++    +       ++I  LV+ A  N+   ++ V+D    
Sbjct: 156 EAKDSVFVKDKEPGKAAVYLKLKKGTTIGEDQVKSIVALVSGATENIPRENIDVIDDNMN 215

Query: 216 LLTAN-------EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM 268
           LLT +        +    + K     +  +  ++  I   L   +G    ++ V   L+ 
Sbjct: 216 LLTKDINSDKNNSVSSEAISKQQDAEKNYEDRMQKAIVSLLEPIVGKGKVKATVNVNLDF 275

Query: 269 DTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
           D++Q  + V DP+  +       +      T+  +S V    +    +    P       
Sbjct: 276 DSKQKTQTVVDPNKVIVSQENSKETNNSGSTATSQSPVDNNMSNTTTATNNNPSA----- 330

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           + K+++++NYE+            +++RL+ +V+V+                  +    +
Sbjct: 331 SSKEDQKTNYEVGKSESKVISAPGEVKRLTASVMVDGN-------------LDAATQQTL 377

Query: 389 NKIVSAATGINSRRGDTITITSMDF---LENQLFNSGTVQVSFMDILSRHFATVINALVF 445
              V  A G+++ RGD +++  M F    ++Q  +      +      ++   ++  ++ 
Sbjct: 378 ENAVGNAIGLDALRGDKVSVVGMAFDTTAQDQAKSEIDAMNAEAATAGKNKMMIVAGVLG 437

Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505
            +   +V F      RR  N ++ ++             +++ +   ++P ++   D   
Sbjct: 438 ALLLGMVIFFIAR--RRKKNKEENEE------------LLNTLIDDTILPKES---DEVF 480

Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
           + I   S+  +S +   + + +  +         E+  +I++ W     
Sbjct: 481 EPIEFESKTQKSHLEEEIKRYATEK--------PEQVVEIIKSWLTENE 521


>gi|332669190|ref|YP_004452198.1| flagellar M-ring protein FliF [Cellulomonas fimi ATCC 484]
 gi|332338228|gb|AEE44811.1| flagellar M-ring protein FliF [Cellulomonas fimi ATCC 484]
          Length = 535

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 119/537 (22%), Positives = 221/537 (41%), Gaps = 39/537 (7%)

Query: 20  TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN 79
            R L L  V ++ +  F A   +++ P    L+  L  +D + +   L+ A + ++++D 
Sbjct: 23  QRTLGLIGVAVLLLGAF-ALSTYLSRPTMSPLFSGLSGADASAVVDELTAAGVQYQLADG 81

Query: 80  GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEI 139
           GS++ VP + +   RI LAA GLP+++   GY L D+      + F Q+ T  RALEGE+
Sbjct: 82  GSTVLVPDAQLYDQRIRLAAAGLPTNADGGGYSLLDE-MPMTSSEFQQQTTYQRALEGEL 140

Query: 140 ARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAA 197
           ART+ +I G+ +A V + +P+   F    A PTASV IR            +AI HLV+A
Sbjct: 141 ARTVGAIDGVESASVKLALPEESVFVSEKADPTASVFIRTRPGTSLSLDQVQAIVHLVSA 200

Query: 198 AVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDN 257
            +  +   DV V+D+TG++L+A        G +       +  +  ++   L   +G   
Sbjct: 201 GIDGMTPTDVAVVDATGEVLSAV-GTGTTGGVAGQQASDYEARVAASVQALLDPLVGPGR 259

Query: 258 FRSAVVAELNMDTQQIREIVY--DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV 315
               V AE++          +   PD+    S   + +      +   + V    N+   
Sbjct: 260 SAVTVTAEIDQSQTDRTVEEFTATPDTPPLASS-TTTETYTGGAASGAAGVLGPDNIQVP 318

Query: 316 SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS 375
           +        S E+T   E+ +N  +N  +  TT     ++R S+AVV+++     +    
Sbjct: 319 NGDGTTGEGSYEST--TEDVTN-AVNKSTERTTQGPGAIQRQSVAVVLDEKAAAPID--- 372

Query: 376 ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ--LFNSGTVQVSFMDILS 433
                    LA++ + ++AA GI+  RGDTI + ++ F   Q     +        +  +
Sbjct: 373 ---------LAQLRETIAAAAGIDPERGDTIAVQAVPFDTTQAEEAGAALAAAEEAEKAA 423

Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493
           +  + +  A +  V   L+  + +   RR                      I       +
Sbjct: 424 QQTSLIRQAAIGGVVLALLLAIAIAMTRRSRKARRTA--------------IDLGELQPV 469

Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
           + ++  AL+   +D                  +    +  + +   +  A +LR W 
Sbjct: 470 LTDEQRALEGLPEDALPELPPGPLPGEPDPVARKRAEITALADDQPQEVADLLRGWL 526


>gi|257871289|ref|ZP_05650942.1| flagellar M-ring protein fliF [Enterococcus gallinarum EG2]
 gi|257805453|gb|EEV34275.1| flagellar M-ring protein fliF [Enterococcus gallinarum EG2]
          Length = 540

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 125/559 (22%), Positives = 245/559 (43%), Gaps = 39/559 (6%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +QL   ++  +SL   + +I+   ++  + +  A  +      Y  L+  L  +D   IS
Sbjct: 9   EQLKDRWQMQSSL---KKMIVVLSVISVLGITAAVYYLNTRIEYGILFTDLSDADAGTIS 65

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG-LPSSSSNSGYELFDKVNSFGLT 123
             L E  I ++++DNG++I +    V + RI+LA    LP++S  +G+ELFD  N    T
Sbjct: 66  KDLEEQQIAYKLADNGTTILIDKDQVDEYRINLAVDNKLPNTS--TGFELFDDAN-MMTT 122

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
              ++I   RA+ GE+ R I+SI  + +A+V +VMP+   F    + PTAS+++   N  
Sbjct: 123 DEDRKIMYQRAVTGELQRAIESIDAVKSAKVLLVMPEESVFSSEESAPTASIVLTLKNQQ 182

Query: 184 -VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME----RNILGKSLSIVQAIQ 238
              +S + I  L + AV  L   +V V+DS G  LT  E E      +  K ++I  + +
Sbjct: 183 ISDESVQGIVTLTSGAVEKLKPENVKVVDSAGNTLTRTEDEASQLSGLNNKYIAIKDSYE 242

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
             +E  + K L    G D F+ ++  +LN D+ + +++ YD     E      + A    
Sbjct: 243 KTLEEKVAKLLTPIYGADKFQVSINLDLNFDSIERKKVTYD---DPEIKSETVQAAGSQG 299

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
           T Q     TV+ N+ +V+        S   + +       E++T++  T      +ER++
Sbjct: 300 TVQEAQTGTVDDNVSNVTGTDGEGNNSYSRSVEN------ELDTETTTTITAPGMIERMT 353

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
            ++V+N                  +  AE+ +++++A G ++ RGD I I   DF + ++
Sbjct: 354 SSIVINAN-------------LSQADQAELQQLIASAVGYDNDRGDQIAIQGFDFAQAEV 400

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
             +   Q +     ++ +         ++   LV  + +  +RR    D+ +        
Sbjct: 401 DPAADPQGNEPIAAAKGYLKYAIIGGIVLTLFLVILMIVGVIRRRRKEDELEVDVTEEMV 460

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS-----DLRLLH 533
             + P   S   +  +  + +     N+   +     ++      ++ S     D    +
Sbjct: 461 TFAQPSAVSTGASPTVAQEVVFGGVGNRSAETKPAAPEASTQETAAEHSGEPTLDQTARN 520

Query: 534 MIEINEERFAKILRKWARS 552
             E N E  A++++ W + 
Sbjct: 521 YAESNPEVAAELIKAWMKE 539


>gi|148269839|ref|YP_001244299.1| flagellar M-ring protein FliF [Thermotoga petrophila RKU-1]
 gi|281412278|ref|YP_003346357.1| flagellar M-ring protein FliF [Thermotoga naphthophila RKU-10]
 gi|147735383|gb|ABQ46723.1| flagellar M-ring protein FliF [Thermotoga petrophila RKU-1]
 gi|281373381|gb|ADA66943.1| flagellar M-ring protein FliF [Thermotoga naphthophila RKU-10]
          Length = 532

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 101/474 (21%), Positives = 198/474 (41%), Gaps = 28/474 (5%)

Query: 1   MAILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLE 56
           M I+++L   +K       S+ R R  ++  + +  ++  +      + PHY  L   L 
Sbjct: 1   MNIVERLRDLWKKIVELWNSMSRERKFLVGGIGIALVITIVLFAVVASVPHYRLLVAGLN 60

Query: 57  VSDVNRISVALSEANIDFRISDNGSSISVPSS-MVGKARIHLAAQGLPSSSSNSGYELFD 115
             +   I   L E NI +++S  G  I VP S  V + R+ LA++G+   SS  G+ +  
Sbjct: 61  EDEAGVIIQKLEEMNIPYKVSPGGD-IYVPDSYNVYELRMKLASEGV-LGSSRKGFSIL- 117

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK-IGARPTAS 174
             NSFG TSF +++    AL+ E+ R+I +I G+  ARVH+V+P    + +   A P AS
Sbjct: 118 NENSFGATSFDKQVKYQIALQEELERSIMTIKGVKDARVHLVLPKYTYYVRGEMAEPRAS 177

Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGK 229
           V++          +    I  LV+ AV  L   +V V+D+  + L+     +    +   
Sbjct: 178 VLVVLEPGAELTREQVRGIVELVSGAVEGLKPENVRVVDNYSRSLSDMLETDEGTFLASS 237

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
            L + Q ++   E  I KAL +  G           +N    +     Y+  ++ E  +R
Sbjct: 238 KLELKQQLEKYYESKIKKALESVFGPGRVEVIPDISINWSKIETEMKKYEAPARREGLVR 297

Query: 290 LSK-DAQRSETSQP-ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
             +   ++S+   P       + N+P ++        +    ++    +NYE+N      
Sbjct: 298 SQETQVEKSQNLSPTGGPAGTDSNIPPLTYPSATSEGT-STYERTHTITNYELNEVYQKI 356

Query: 348 THDN-YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG-INSRRGDT 405
             +   ++  LS+AV+++          S+       +   IN +V    G I S    +
Sbjct: 357 IQNREGEISSLSVAVIID--------ASSSVLQNSSDWSGVINDLVEKGVGSITSSASLS 408

Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA 459
           + +  + F +  +  +   ++  ++   R     +   +    T ++ +L +  
Sbjct: 409 VAVAFLPF-DRSIERALQEELKQIETRRRFILYSVGIALLGFLTFILIYLVIVQ 461


>gi|138894740|ref|YP_001125193.1| flagellar MS-ring protein [Geobacillus thermodenitrificans NG80-2]
 gi|134266253|gb|ABO66448.1| Flagellar basal-body M-ring protein [Geobacillus
           thermodenitrificans NG80-2]
          Length = 527

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 86/446 (19%), Positives = 174/446 (39%), Gaps = 31/446 (6%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           +   F++  T   + + L +  + +V   + +   FF        LY  L   +  +I  
Sbjct: 11  RARSFWQERTK--KQKWLAIGGIAVVLFSIGIGV-FFATRTEMVPLYSNLTPQEAGQIKA 67

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L    +   ++D G++I VP   V   ++ LAA+G+P+S     Y  F +  SFG+T  
Sbjct: 68  TLDGRGVSAEVADGGTTIKVPKEQVDALKVELAAEGIPNSGV-IDYSFFGQNASFGMTDN 126

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA-RPTASVMIRAINPS- 183
              + +++A++ E+A  +++I G+  A+V I +P    F        +AS+++R      
Sbjct: 127 EFNMVKLKAMQTELANLMKTIDGVEDAKVMINLPQPSVFVSDEKGEASASIVLRTKPGYQ 186

Query: 184 -VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL----GKSLSIVQAIQ 238
              +   A+ HLVA +VPNL   ++ +++   +         N           I + I+
Sbjct: 187 FSDEQIRALYHLVAKSVPNLSTDNIVIMNQFFEYFDLKNDSGNSTRATFASQQQIKKQIE 246

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIRLSKD 293
            +I+  + + L   +G D    +V A+++   ++  E +  P     D  +  S++  K+
Sbjct: 247 RDIQRQVQQMLGTMMGQDKVVVSVTADVDFTQEKREENLVAPVGEENDEGIAVSVQRIKE 306

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
                 + P        N       +     +  N ++ EE  N E+N          YK
Sbjct: 307 TYAGSGAPPGGTAGTGTN--ETPGYQGASGATNGNYERTEETINNEVNKIKKQIVESPYK 364

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI-NKIVSAAT--G-----INSRRGDT 405
           +  L I V+V      +    ++   +  + + +I   IV  +   G      +      
Sbjct: 365 IRDLGIQVMVEP---PDPDDPNSLTPEAVNDIQKILGTIVRTSIDKGEAQTLTDEDINSR 421

Query: 406 ITITSMDFLENQLFNSGTV--QVSFM 429
           I ++   F     F          + 
Sbjct: 422 IVVSVQKFNGKPTFTEPDPVRPAWWW 447


>gi|257875991|ref|ZP_05655644.1| flagellar M-ring protein fliF [Enterococcus casseliflavus EC20]
 gi|257810157|gb|EEV38977.1| flagellar M-ring protein fliF [Enterococcus casseliflavus EC20]
          Length = 540

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 126/559 (22%), Positives = 246/559 (44%), Gaps = 39/559 (6%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +QL   ++  +SL   + +I+   ++  + +  A  +      Y  L+  L  +D   IS
Sbjct: 9   EQLKDRWQMQSSL---KKMIVVLSVISVLGITAAVYYLNTRIEYGILFTDLSDADAGTIS 65

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG-LPSSSSNSGYELFDKVNSFGLT 123
             L E  I ++++DNG++I +    V + RI+LA    LP++S  +G+ELFD  N    T
Sbjct: 66  KDLEEQQIAYKLADNGTTILIDKDQVDEYRINLAVDNKLPNTS--TGFELFDDAN-MMTT 122

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
              ++I   RA+ GE+ R I+SI  + +A+V +VMP+   F    + PTAS+++   N  
Sbjct: 123 DEDRKIMYQRAVTGELQRAIESIDAVKSAKVLLVMPEESVFSSEESAPTASIVLTLKNQQ 182

Query: 184 -VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME----RNILGKSLSIVQAIQ 238
              +S + I  L + AV  L   +V V+DS G  LT  E E      +  K ++I  + +
Sbjct: 183 ISDESVQGIVTLTSGAVEKLKPENVKVVDSAGNTLTRTEDEASQLSGLNNKYIAIKDSYE 242

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
             +E  + K L    G D F+ ++  +LN D+ + +++ YD     E      + A    
Sbjct: 243 KTLEEKVAKLLTPIYGADKFQVSINLDLNFDSIERKKVTYD---DPEIKSETVQAAGSQG 299

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
           T Q     TV+ N+ +V+        S   + +       E++T++  T      +ER++
Sbjct: 300 TVQEAQTGTVDDNVSNVTGTDGEGNNSYSRSVEN------ELDTETTTTITAPGMIERMT 353

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
            ++V+N                  +  AE+ +++++A G ++ RGD I I   DF + ++
Sbjct: 354 SSIVINAN-------------LSQADQAELQQLIASAVGYDNDRGDQIAIQGFDFAQAEV 400

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
             +   Q +     ++ +         ++   LV  + +  +RR    D+ +        
Sbjct: 401 DPAVDPQGNEPIAAAKGYLKYAIIGGIVLTLFLVILMIVGVIRRRRKEDELEVDVTEEMV 460

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS-----DLRLLH 533
             + P   S  T+  +  + +     N+   +     ++      ++ S     D    +
Sbjct: 461 TFTQPSAVSTGTSPTVAQEVVFGGVGNRSAETKPAVPEASTQEAAAEHSGEPTLDQTARN 520

Query: 534 MIEINEERFAKILRKWARS 552
             E N E  A++++ W + 
Sbjct: 521 YAESNPEVAAELIKAWMKE 539


>gi|257866378|ref|ZP_05646031.1| flagellar M-ring protein fliF [Enterococcus casseliflavus EC30]
 gi|257873106|ref|ZP_05652759.1| flagellar M-ring protein fliF [Enterococcus casseliflavus EC10]
 gi|257800336|gb|EEV29364.1| flagellar M-ring protein fliF [Enterococcus casseliflavus EC30]
 gi|257807270|gb|EEV36092.1| flagellar M-ring protein fliF [Enterococcus casseliflavus EC10]
          Length = 540

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 128/559 (22%), Positives = 246/559 (44%), Gaps = 39/559 (6%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +QL   ++  +SL   + +I+   ++  + +  A  +      Y  L+  L  +D   IS
Sbjct: 9   EQLKDRWQMQSSL---KKMIVVLSVISVLGITAAVYYLNTRIEYGILFTDLSDADAGTIS 65

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG-LPSSSSNSGYELFDKVNSFGLT 123
             L E  I ++++DNG++I +    V + RI+LA    LP++S  +G+ELFD  N    T
Sbjct: 66  KDLEEQQIAYKLADNGTTILIDKDQVDEYRINLAVDNKLPNTS--TGFELFDDAN-MMTT 122

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
              ++I   RA+ GE+ R I+SI  + +A+V +VMP+   F    + PTAS+++   N  
Sbjct: 123 DEDRKIMYQRAVTGELQRAIESIDAVKSAKVLLVMPEESVFSSEESAPTASIVLTLKNQQ 182

Query: 184 -VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME----RNILGKSLSIVQAIQ 238
              +S + I  L + AV  L   +V V+DS G  LT  E E      +  K ++I  + +
Sbjct: 183 ISDESVQGIVTLTSGAVEKLKPENVKVVDSAGNTLTRTEDEASQLSGLNNKYIAIKDSYE 242

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
             +E  + K L    G D F+ ++  +LN D+ + +++ YD     E      + A    
Sbjct: 243 KTLEEKVAKLLTPIYGADKFQVSINLDLNFDSIERKKVTYD---DPEIKSETVQAAGSQG 299

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
           T Q     TV+ N+ +V+          EN        N E++T++  T      +ER++
Sbjct: 300 TVQEAQTGTVDDNVSNVT-----GTDGEENNSYSRSVEN-ELDTETTTTITAPGMIERMT 353

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
            ++V+N                  +  AE+ +++++A G ++ RGD I I   DF + ++
Sbjct: 354 SSIVINAN-------------LSQADQAELQQLIASAVGYDNDRGDQIAIQGFDFAQAEV 400

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
             +   Q +     ++ +         ++   LV  + +  +RR    D+ +        
Sbjct: 401 DPAVDPQGNEPIAAAKGYLKYAIIGGIVLALFLVILMIVGVIRRRRKEDELEVDVTEEMV 460

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS-----DLRLLH 533
             + P   S  T+  +  + +     N+   +     ++      ++ S     D    +
Sbjct: 461 TFAQPSAVSTGTSPSVAQEVVFGGVGNRSAETKPAVPEASTQEAAAEHSGEPTLDQTARN 520

Query: 534 MIEINEERFAKILRKWARS 552
             E N E  A++++ W + 
Sbjct: 521 YAESNPEVAAELIKAWMKE 539


>gi|167574616|ref|ZP_02367490.1| flagellar MS-ring protein [Burkholderia oklahomensis C6786]
          Length = 448

 Score =  297 bits (760), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 104/422 (24%), Positives = 192/422 (45%), Gaps = 23/422 (5%)

Query: 45  SPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPS 104
             +Y  ++   E   + +++  L    I +RI  +   + VP + + +AR+ LAA+G+ +
Sbjct: 22  EANYKPVFGAREPVQLGQLASVLDGERIPYRIHPDTGQVLVPRADLARARMILAARGV-T 80

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
                G E  D+ +  G + F+Q++   R LE E+A+++ ++  +  ARVH+ +    SF
Sbjct: 81  GQPAPGLEQIDRDDPLGTSQFVQDVRFRRGLESELAQSVMTMEAVEKARVHLSIAKSSSF 140

Query: 165 RK-IGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE 221
               G + +ASVM+          +   AI +LVA +VPNL    V+V+D TG  L+A  
Sbjct: 141 VMMDGEKSSASVMLTLKPGRRLGKEQIAAILNLVAGSVPNLAPSRVSVVDQTGAFLSARV 200

Query: 222 MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD 281
              +  G         + E   ++   LA  LG+DNFR +V A +N D  +     +   
Sbjct: 201 DLDDDFGDGNDAAARFRDETIRSVQDLLAPTLGIDNFRVSVTAAVNNDRVEEMREQFG-- 258

Query: 282 SKVERSIRLSKDAQRSETSQPESAVTVEQNMPH-VSDRKVPLPRSLENTDKKEEQSNYEI 340
                + +++ +A R E ++   A+ V  ++ +   D     P++ +   +      Y  
Sbjct: 259 ----EAPKVTNEATRDEQNRDRIALGVPGSLSNRPVDAPASAPQADDGVQRHATTRQYAY 314

Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400
           +       H   +LE+LS+AVV+N       +  +  +      LA I +I+    GI++
Sbjct: 315 DRNVTQIKHSRGRLEKLSVAVVLN-----NAVSPAKGKPWSAEQLAHIEQILRNGLGIDA 369

Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460
           +RGD + ++S+DF      N+        + L +    V     + +G LL+  L    L
Sbjct: 370 QRGDQLVVSSLDF---PAPNAPEPWWRERETLEQGGWYV----AYAIGALLLYLLVARPL 422

Query: 461 RR 462
            R
Sbjct: 423 LR 424


>gi|325567531|ref|ZP_08144198.1| flagellar M-ring protein fliF [Enterococcus casseliflavus ATCC
           12755]
 gi|325158964|gb|EGC71110.1| flagellar M-ring protein fliF [Enterococcus casseliflavus ATCC
           12755]
          Length = 541

 Score =  296 bits (758), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 123/560 (21%), Positives = 243/560 (43%), Gaps = 41/560 (7%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +QL   ++  +SL   + +I+   ++  + +  A  +      Y  L+  L  +D   IS
Sbjct: 10  EQLKDRWQMQSSL---KKMIVVLSVISVLGITAAVYYLNTRIEYGILFTDLSDADAGTIS 66

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG-LPSSSSNSGYELFDKVNSFGLT 123
             L E  I ++++DNG++I +    V + RI+LA    LP++S  +G+ELFD  N    T
Sbjct: 67  KDLDEQQIAYKLADNGTTILIDKDQVDEYRINLAVDNKLPNTS--TGFELFDDAN-MMTT 123

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
              ++I   RA+ GE+ R I+SI  + +A+V +VMP+   F    + PTAS+++   N  
Sbjct: 124 DEDRKIMYQRAVTGELQRAIESIDAVKSAKVLLVMPEESVFSSEESAPTASIVLSLKNQQ 183

Query: 184 -VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME----RNILGKSLSIVQAIQ 238
              +S + I  L + AV  L   +V V+DS G  LT  E E      +  K ++I  + +
Sbjct: 184 ISDESVQGIVTLTSGAVEKLKPENVKVVDSAGNTLTRTEDEASQLSGLNNKYIAIKDSYE 243

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
             +E  + K L    G D F+ ++  +LN D+ + +++ YD     E      + A    
Sbjct: 244 KTLEEKVAKLLTPIYGADKFQVSINLDLNFDSIERKKVTYD---DPEIKSETVQAAGSQG 300

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
           T Q     TV+ N+ +V+        S   + +       E++T++  T      +ER++
Sbjct: 301 TVQEAQTGTVDDNVSNVTGTDGEGNNSYSRSVEN------ELDTETTTTITAPGMIERMT 354

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
            ++V+N                  +  AE+ +++++A G ++ RGD I I   DF + ++
Sbjct: 355 SSIVINAN-------------LSQADQAELQQLIASAVGYDNDRGDQIAIQGFDFAQAEV 401

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
             +   Q +     ++ +         ++   LV  + +  +RR    +D  + +V  + 
Sbjct: 402 DPAADPQGNEQIAAAKGYVKYAIIGGIVLTLFLVILMIVGVIRR-RRKEDELEVDVTDEM 460

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS------DLRLL 532
           +    P ++++         +               +        + +       D    
Sbjct: 461 VTFAQPSAASIGASNPVAQEVVFGGVGNRSAETKPAVPEASTQEATAEHTGEPTLDQTAR 520

Query: 533 HMIEINEERFAKILRKWARS 552
           +  E N E  A++++ W + 
Sbjct: 521 NYAESNPEVAAELIKAWMKE 540


>gi|167567191|ref|ZP_02360107.1| flagellar MS-ring protein [Burkholderia oklahomensis EO147]
          Length = 441

 Score =  296 bits (758), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 104/422 (24%), Positives = 191/422 (45%), Gaps = 23/422 (5%)

Query: 45  SPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPS 104
             +Y  ++   E   + +++  L    I +RI  +   + VP + + +AR+ LAA+G+ +
Sbjct: 22  EANYKPVFGAREPVQLGQLASVLDGERIPYRIHPDTGQVLVPRADLARARMILAARGV-T 80

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
                G E  D+ +  G + F+Q++   R LE E+A+++ ++  +  ARVH+ +    SF
Sbjct: 81  GQPAPGLEQIDRDDPLGTSQFVQDVRFRRGLESELAQSVMTMEAVEKARVHLSIAKSSSF 140

Query: 165 RK-IGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE 221
               G + +ASVM+          +   AI +LVA +VPNL    V+V+D TG  L+A  
Sbjct: 141 VMMDGEKSSASVMLTLKPGRRLGKEQIAAILNLVAGSVPNLAPSRVSVVDQTGAFLSARV 200

Query: 222 MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD 281
              +  G         + E   ++   LA  LG+DNFR +V A +N D  +     +   
Sbjct: 201 DLDDDFGDGNDAAARFRDETIRSVQDLLAPTLGIDNFRVSVTAGVNNDRVEEMREQFG-- 258

Query: 282 SKVERSIRLSKDAQRSETSQPESAVTVEQNMPH-VSDRKVPLPRSLENTDKKEEQSNYEI 340
                + +++ +A R E ++   A+ V  ++ +   D     P++     +      Y  
Sbjct: 259 ----EAPKVTNEATRDEQNRDRIALGVPGSLSNRPVDAPASAPQADGGVQRHATTRQYAY 314

Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400
           +       H   +LE+LS+AVV+N       +  +  +      LA I +I+    GI++
Sbjct: 315 DRNVTQIKHSRGRLEKLSVAVVLN-----NAVSPAKGKPWSAEQLAHIEQILRNGLGIDA 369

Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460
           +RGD + ++S+DF      N+        + L +    V     + +G LL+  L    L
Sbjct: 370 QRGDQLVVSSLDF---PAPNAPEPWWRERETLEQGGWYV----AYAIGALLLYLLVARPL 422

Query: 461 RR 462
            R
Sbjct: 423 LR 424


>gi|254461781|ref|ZP_05075197.1| flagellar M-ring protein FliF [Rhodobacterales bacterium HTCC2083]
 gi|206678370|gb|EDZ42857.1| flagellar M-ring protein FliF [Rhodobacteraceae bacterium HTCC2083]
          Length = 567

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 114/578 (19%), Positives = 241/578 (41%), Gaps = 38/578 (6%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++ L  F++      +    ++A+V LV I LF      V  P    L+  L  S+   +
Sbjct: 1   MEDLRSFYRQPA--IQRAFPVVAAVFLVAIGLFFYVTLQV--PDRTTLFASLPESEKPAV 56

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
             AL     D +I      ++VP      +R+ LA+QGLP+S  + GY +       G +
Sbjct: 57  MEALRANGTDVQIDPITGEMTVPVGDYHNSRLSLASQGLPTSMPD-GYSVL-SDMPMGTS 114

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI--N 181
             ++ +   ++ E E++ +I +I  +  +RVH+ +P+  +F +    PTASV ++     
Sbjct: 115 RSVERMRLKQSQELELSLSIDNIDVVAGSRVHLAIPERSAFARNAQNPTASVFVQLKLGR 174

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQH 239
               +  +AI HLV+++V NL    VTV+D  G+LL+   ++    +  + L     ++ 
Sbjct: 175 ALSSQQVQAIVHLVSSSVANLPKSAVTVIDQNGRLLSDSVDDPATTLADRQLDYQLKLED 234

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
                I   L   +G  N  + V  +++   +++ + +  PD     S + + + + S  
Sbjct: 235 IYRRRIESLLTPVVGPGNVSAQVSLDIDFTRREVTQDMVVPDQSALLSEQSALEEEISAP 294

Query: 300 SQPESAVTVEQNMPHV---------SDRKVPLPRSLENTDKK----EEQSNYEINTKSIA 346
           S+         N P           S+ +    ++ E++  K        NYE++ K  +
Sbjct: 295 SR--GVPGAFTNTPPQMPSFERRVESNGEEGDAQAEESSSAKMRSSNNLRNYEVSRKVSS 352

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI-----DSYLAEINKIVSAATGINSR 401
            +     L  + +AV++ +           +   +        + EI  +V++  GIN+R
Sbjct: 353 ESSPMALLTGVHVAVLLRELSPIGESVEGGEAPLMQIGIDPEKIEEIKALVASTVGINAR 412

Query: 402 RGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461
           RGDT+T++SM ++ ++   +              +   +   + ++  L +  LG+  ++
Sbjct: 413 RGDTLTVSSMPYISSESILASMSNREPAQWHEDEWVREMARNMLILAVLAIVTLGI--VK 470

Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI-- 519
            L     A   E     IL            +      +L+     + S    + + +  
Sbjct: 471 PLLTQLFATPSEGAAGKILMSDDDDIIDMDAIEMEAGQSLEYIKAKLKSKRGIISAEMLD 530

Query: 520 --NSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
             NSY  K + +R+  M++ +  R + + +    ++++
Sbjct: 531 TANSYDDKIALIRM--MVDDDAGRVSNVFKGMMENDMD 566


>gi|103488413|ref|YP_617974.1| flagellar M-ring protein FliF [Sphingopyxis alaskensis RB2256]
 gi|98978490|gb|ABF54641.1| flagellar M-ring protein FliF [Sphingopyxis alaskensis RB2256]
          Length = 551

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 105/540 (19%), Positives = 211/540 (39%), Gaps = 50/540 (9%)

Query: 26  ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISV 85
           A  +   I +   A F + +     L+  L+ +D   ++ AL    I   I     +++V
Sbjct: 45  AIAMTAAIGIAALAYFTMQTAPQAQLFAGLDDADKAAVAEALQAQGIGHSIDGTTGALTV 104

Query: 86  PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145
            +  + +ARI LA QGLP ++ +   +        G +  ++      A E +++RTI++
Sbjct: 105 DADKLHQARIALAGQGLPKAAPSG--DSLIAALPMGSSRAIEGEALRSAREADLSRTIET 162

Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLD 203
           I  + +ARVHI   +   F +     TASVM+   N         +AIR LVA++VP ++
Sbjct: 163 IDAVKSARVHIAAAEPSLFVRDDKPATASVMLTLQNGRALGDGQVQAIRFLVASSVPGMN 222

Query: 204 MGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVV 263
              V+V+D  G LL+      ++  K+  +   ++      ++  L   LG  N+   V 
Sbjct: 223 ADQVSVIDQRGALLSDTASGSDM--KAFQLQLQVEDRFRRALDTLLGPMLGAGNYTVEVH 280

Query: 264 AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET-----------SQPESAVTVEQNM 312
           A+++M   Q     +  + +   S ++++    +             +QP  A T+    
Sbjct: 281 ADVDMSESQATRESFPENDRALTSEQITRSVSGTANAPAVGIPGALANQPPQATTITAEG 340

Query: 313 PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372
           P  +    PLP +  N +       YE+  +   T     KL R+S+AV +N+G+     
Sbjct: 341 PQPAPANAPLPGTESNENAARA---YEVGREISVTHSPQGKLRRVSVAVALNQGK----- 392

Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDIL 432
                +    + LA+I+ +V  A G ++ RGD + I    F   +          +   L
Sbjct: 393 -----KALTQADLAKIDALVKGAIGYDAARGDMVAINQRPFAPVEDTAPAFYDQGWFLPL 447

Query: 433 SRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTG 492
            +    ++ AL+  +             R +      +      ++      + +A    
Sbjct: 448 VKQVGAILAALLAFLFIG----------RPMIRAARQRAAARLEQNQALEETLLAATDRP 497

Query: 493 LMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
            +            ++   + + ++R N          +   +  +  R A ++R   + 
Sbjct: 498 ALA-SGANSREITLEMIEAAPSYEARANL---------VRAFVRQDSARAALVVRHLMQE 547


>gi|56419754|ref|YP_147072.1| flagellar MS-ring protein [Geobacillus kaustophilus HTA426]
 gi|56379596|dbj|BAD75504.1| flagellar basal-body M-ring protein [Geobacillus kaustophilus
           HTA426]
          Length = 528

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 103/537 (19%), Positives = 196/537 (36%), Gaps = 75/537 (13%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           FF        LY  L   +  +I   L +  +   ++D G++I VP   V   ++ LAA+
Sbjct: 43  FFATRTEMVPLYSNLSPQEAGQIKATLDQRGVPAEVADGGTTIKVPKEQVDALKVELAAE 102

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           G+P+S     Y  F +  SFG+T     + +++A++ E+A  I++I G+  A+V I +P 
Sbjct: 103 GIPNSGV-IDYSFFGQNASFGMTDNEFNMVKLKAMQTELANLIKTIDGVEDAKVMINLPQ 161

Query: 161 MGSFRKIGA-RPTASVMIRAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
              F        +AS++++         +  +A+ HLVA +VPNL   ++ +++   +  
Sbjct: 162 PSVFVSDEKGEASASIVLKTKPGYQFSDEQIKALYHLVAKSVPNLSTDNIVIMNQFFEYY 221

Query: 218 TANEMERNILG----KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI 273
                  N  G        I + I+ +I+  + + L   +G D    +V A+++   ++ 
Sbjct: 222 DLKNDGENSTGTTFASQQQIKKQIERDIQRQVQQLLGTMMGQDKVVVSVTADVDFTQEKR 281

Query: 274 REIVYDP-----DSKVERSIRLSKDAQRSETSQPESAVTVEQN-MPHVSDRKVPLPRSLE 327
            E +  P        +  S++  K+      + P  A     N +P   +       +  
Sbjct: 282 EENLVSPVDEKTKQGIAVSVQRIKETYSGSGAPPGGAAGTGANEVPGYQNANG---ATNG 338

Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE 387
           N ++ EE  N E+N          YK+  L I V+V      E    +         + +
Sbjct: 339 NYERTEETINNEVNKIKKQIVESPYKIRDLGIQVMV------EPPDPNDPNSLPPETVND 392

Query: 388 INKIVSAAT--GINSRRGDTIT---------ITSMDFLENQLFNSGTVQVSFMDILSRHF 436
           I K++       I+     T+T         ++   F     F   T         +   
Sbjct: 393 IQKLLGTIVRTSIDKSEAQTLTDQDINNRIVVSVQKFNGKPTFTESTPDRPAWWWYAAGA 452

Query: 437 ATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPN 496
             ++                  AL     +   ++ E   +  L  PP+S+       P 
Sbjct: 453 GALLLV----------------ALLLFLWLRRRREDEEEEEEHLFTPPLSTEPDLPEPPE 496

Query: 497 DNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
              AL                            +L  + +   + FAK+L+ W   E
Sbjct: 497 TEAALR-------------------------RRQLERLAKEKPDEFAKLLKTWLSEE 528


>gi|18642464|emb|CAD22875.1| basal-body M-ring protein [Erwinia chrysanthemi]
          Length = 357

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 87/323 (26%), Positives = 149/323 (46%), Gaps = 5/323 (1%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
             F +    L     + L       I + +A   +   P Y  LY  L   D   I   L
Sbjct: 13  KSFGEILNRLRANPKIPLLIASAATIAIVVALSLWARGPDYRVLYTNLNERDGGSIVSEL 72

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
            + NI +R +++G++I +PS  V + R+ LA QGLP   +  G+EL D+   FG++ F +
Sbjct: 73  GKMNIPYRFTESGAAIMIPSDKVYETRLKLAQQGLPKGGA-VGFELLDQE-KFGISQFSE 130

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
           +I   RALEGE+ART++++  I  ARVH+ +P    F +    P+A+V +          
Sbjct: 131 QINYQRALEGELARTMETLGPIQNARVHLAIPKPSLFVREQKSPSAAVTVTLQPGRALDD 190

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMN 244
               AI +LV+++V  L    VTV+D TGKLLT N+   R++    L     ++   +  
Sbjct: 191 SQISAITYLVSSSVAGLPADKVTVVDQTGKLLTQNDSSGRDLNAAQLKYANEVESNYQRR 250

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           I   L   +G  N  + V A+++  +++  +  Y P+    ++   S+   +S+     +
Sbjct: 251 IEAILTPVVGAGNVHAQVTAQIDFASREQTDEQYQPNQTPNQAAVRSQQNSQSDQRGGPN 310

Query: 305 AVTVEQNMPHVSDRKVPLPRSLE 327
              V   + +        P S  
Sbjct: 311 VGGVPGALSNTPTPAPTAPISTP 333


>gi|153953778|ref|YP_001394543.1| flagellar MS-ring protein [Clostridium kluyveri DSM 555]
 gi|219854394|ref|YP_002471516.1| hypothetical protein CKR_1051 [Clostridium kluyveri NBRC 12016]
 gi|146346659|gb|EDK33195.1| FliF [Clostridium kluyveri DSM 555]
 gi|219568118|dbj|BAH06102.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 527

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 115/568 (20%), Positives = 214/568 (37%), Gaps = 59/568 (10%)

Query: 4   LDQLLQFFKSGTSLGRTRI----LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           + +L Q FK+     +       +    +    I   + A   +    Y  L+  ++  D
Sbjct: 1   MGKLSQIFKNLIDKFKKLSKNKKIAFGVITAGIIAAIVFAAISLGKTKYAVLFSNMDSKD 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
           ++ +   L E  +D ++   G+SI VP   V   R+ + ++ +  ++ + G+EL D+ + 
Sbjct: 61  LSSVYKQLQEDKVDVKVE--GNSILVPEGEVDATRMKVLSE-VEITNGSEGFELLDQ-SK 116

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
            G T    +I   RAL+GE+ RTI+S+  +  ARVH+V+PD   F K  +  +ASV ++ 
Sbjct: 117 LGSTDTEIKINYQRALQGELERTIKSLPEVENARVHLVLPDDTEFVKDTSPGSASVTLKL 176

Query: 180 INP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--------K 229
                   +  +A+  LV+ AV N+   +V V+D    LL+ +  E             K
Sbjct: 177 KEGEELSKEQVKALVSLVSGAVKNVPKENVQVIDDNMTLLSKDLFEDEANSEDSTIPAEK 236

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
              + +  +  +E N+   L A  G D  +  V A+L+ D  Q     YD +S V     
Sbjct: 237 QQQLKEQYEKNLEKNLLSMLEAVYGKDKVQVKVNADLDFDAVQQNSTTYDNNSVVVSEHT 296

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
           +++  Q   T+Q  S   V+ NM +          S  N    E   NY +      T  
Sbjct: 297 INETNQGDTTNQTGSP--VDNNMSNTITNNTTGGNSTYN----ETTRNYNVPKVEQKTVK 350

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
               ++RL+ +V ++                 D+    I  +  +A G +  RGDTI++ 
Sbjct: 351 APGSVKRLTASVALDGDV-------------DDATTTAIRNLAVSAIGYDGNRGDTISVE 397

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
            + F      N+   Q    D+     A   N                     +  I  A
Sbjct: 398 GLPFDTTAKDNA---QKDMEDMEQAEQAAKRN----------------RLFAVIGGIAAA 438

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD- 528
               + G  I         +    +    I +   ++D  +  +     +      +   
Sbjct: 439 IIATIIGVIIWRRRHAEDELLEDELRPGGIDVVIGDEDTKASEKIKFKPLELEQDTEDVH 498

Query: 529 --LRLLHMIEINEERFAKILRKWARSEI 554
               +    +   ++ A I++ W   + 
Sbjct: 499 IEREIKKYAKDKPDQVADIIKSWLAEDE 526


>gi|297530606|ref|YP_003671881.1| flagellar M-ring protein FliF [Geobacillus sp. C56-T3]
 gi|297253858|gb|ADI27304.1| flagellar M-ring protein FliF [Geobacillus sp. C56-T3]
          Length = 528

 Score =  293 bits (751), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 102/537 (18%), Positives = 195/537 (36%), Gaps = 75/537 (13%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           FF        LY  L   +  +I   L +  +   ++D G++I VP   V   ++ LAA+
Sbjct: 43  FFATRTEMVPLYSNLSPQEAGQIKATLDQRGVPAEVADGGTTIKVPKEQVDALKVELAAE 102

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           G+P+S     Y  F +  SFG+T     + +++A++ E+A  I++I G+  A+V I +P 
Sbjct: 103 GIPNSGV-IDYSFFGQNASFGMTDNEFNMVKLKAMQTELANLIKTIDGVEDAKVMINLPQ 161

Query: 161 MGSFRKIGA-RPTASVMIRAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
              F        +AS++++         +  +A+ HLVA +VPNL   ++ +++   +  
Sbjct: 162 PSVFVSDEKGEASASIVLKTKPGYQFSDEQIKALYHLVAKSVPNLSTDNIVIMNQFFEYY 221

Query: 218 TANEMERNILG----KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI 273
                  N  G        I + I+ +I+  + + L   +G D    +V A+++   ++ 
Sbjct: 222 DLKNDGENSTGTTFASQQQIKKQIERDIQRQVQQLLGTMMGQDKVVVSVTADVDFTQEKR 281

Query: 274 REIVYDP-----DSKVERSIRLSKDAQRSETSQPESAVTVEQN-MPHVSDRKVPLPRSLE 327
            E +  P        +  S++  K+      + P  A     N +P   +       +  
Sbjct: 282 EENLVSPVDEKTKQGIAVSVQRIKETYSGSGAPPGGAAGTGANEVPGYQNANG---ATNG 338

Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE 387
           N ++ EE  N E+N          YK+  L I V+V      E    +         + +
Sbjct: 339 NYERTEETINNEVNKIKKQIVESPYKIRDLGIQVMV------EPPDPNDPNSLPPETVND 392

Query: 388 INKIVSAAT--GINSRRGDTIT---------ITSMDFLENQLFNSGTVQVSFMDILSRHF 436
           I K++       I+     T+T         ++   F     F             +   
Sbjct: 393 IQKLLGTIVRTSIDKSEAQTLTDQDINNRIVVSVQKFNGKPTFTELAPDRPAWWWYAAGA 452

Query: 437 ATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPN 496
             ++                  AL     +   ++ E   +  L  PP+S+       P 
Sbjct: 453 GALLLV----------------ALLLFLWLRRRREDEEEEEEHLFTPPLSTEPDLPEPPE 496

Query: 497 DNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
              AL                            +L  + +   + FAK+L+ W   E
Sbjct: 497 TEAALR-------------------------RRQLERLAKEKPDEFAKLLKTWLSEE 528


>gi|261313942|ref|ZP_05953139.1| flagellar MS-ring protein [Brucella pinnipedialis M163/99/10]
 gi|261302968|gb|EEY06465.1| flagellar MS-ring protein [Brucella pinnipedialis M163/99/10]
          Length = 335

 Score =  293 bits (750), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 146/327 (44%), Positives = 209/327 (63%), Gaps = 3/327 (0%)

Query: 4   LDQLLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
             QL++  K     LG  +++ L  V    +   +    ++  P Y+ LYV L   DVNR
Sbjct: 10  FQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVNR 69

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           + +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S GL
Sbjct: 70  MGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGL 128

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           TSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA   
Sbjct: 129 TSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGG 188

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEI 241
              +SA++IR LVAAAVP+LD   VTVLD+ G LL +A E        + S+ Q +   +
Sbjct: 189 FSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASHV 248

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           + +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  ++
Sbjct: 249 DDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNNR 308

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLEN 328
            ++A  VEQN+P    +      S E 
Sbjct: 309 NDNATGVEQNIPQEQIQNRNGESSTEK 335


>gi|254706488|ref|ZP_05168316.1| flagellar MS-ring protein [Brucella pinnipedialis M163/99/10]
          Length = 330

 Score =  293 bits (750), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 146/327 (44%), Positives = 209/327 (63%), Gaps = 3/327 (0%)

Query: 4   LDQLLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
             QL++  K     LG  +++ L  V    +   +    ++  P Y+ LYV L   DVNR
Sbjct: 5   FQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVNR 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           + +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S GL
Sbjct: 65  MGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGL 123

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           TSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA   
Sbjct: 124 TSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGG 183

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEI 241
              +SA++IR LVAAAVP+LD   VTVLD+ G LL +A E        + S+ Q +   +
Sbjct: 184 FSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASHV 243

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           + +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  ++
Sbjct: 244 DDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNNR 303

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLEN 328
            ++A  VEQN+P    +      S E 
Sbjct: 304 NDNATGVEQNIPQEQIQNRNGESSTEK 330


>gi|261419419|ref|YP_003253101.1| flagellar MS-ring protein [Geobacillus sp. Y412MC61]
 gi|319766234|ref|YP_004131735.1| flagellar M-ring protein FliF [Geobacillus sp. Y412MC52]
 gi|261375876|gb|ACX78619.1| flagellar M-ring protein FliF [Geobacillus sp. Y412MC61]
 gi|317111100|gb|ADU93592.1| flagellar M-ring protein FliF [Geobacillus sp. Y412MC52]
          Length = 528

 Score =  293 bits (750), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 102/537 (18%), Positives = 195/537 (36%), Gaps = 75/537 (13%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           FF        LY  L   +  +I   L +  +   ++D G++I VP   V   ++ LAA+
Sbjct: 43  FFATRTEMVPLYSNLSPQEAGQIKATLDQRGVPAEVADGGTTIKVPKEQVDALKVELAAE 102

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           G+P+S     Y  F +  SFG+T     + +++A++ E+A  I++I G+  A+V I +P 
Sbjct: 103 GIPNSGV-IDYSFFGQNASFGMTDNEFNMVKLKAMQTELANLIKTIDGVEDAKVMINLPQ 161

Query: 161 MGSFRKIGA-RPTASVMIRAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
              F        +AS++++         +  +A+ HLVA +VPNL   ++ +++   +  
Sbjct: 162 PSVFVSDEKGEASASIVLKTKPGYQFSDEQIKALYHLVAKSVPNLSTDNIVIMNQFFEYY 221

Query: 218 TANEMERNILG----KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI 273
                  N  G        I + I+ +I+  + + L   +G D    +V A+++   ++ 
Sbjct: 222 DLKNDGENSTGTTFASQQQIKKQIERDIQRQVQQLLGTMMGQDKVVVSVTADVDFTQEKR 281

Query: 274 REIVYDP-----DSKVERSIRLSKDAQRSETSQPESAVTVEQN-MPHVSDRKVPLPRSLE 327
            E +  P        +  S++  K+      + P  A     N +P   +       +  
Sbjct: 282 EENLVSPVDEKTKQGIAVSVQRIKETYSGSGAPPGGAAGTGANEVPGYQNANG---ATNG 338

Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE 387
           N ++ EE  N E+N          YK+  L I V+V      E    +         + +
Sbjct: 339 NYERTEETINNEVNKIKKQIVESPYKIRDLGIQVMV------EPPDPNDPNSLPPETVND 392

Query: 388 INKIVSAAT--GINSRRGDTIT---------ITSMDFLENQLFNSGTVQVSFMDILSRHF 436
           I K++       I+     T+T         ++   F     F             +   
Sbjct: 393 IQKLLGTIVRTSIDKSEAQTLTDQDINNRIVVSVQKFNGKPTFTELAPDRPAWWWYASGA 452

Query: 437 ATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPN 496
             ++                  AL     +   ++ E   +  L  PP+S+       P 
Sbjct: 453 GALLLV----------------ALLLFLWLRRRREDEEEEEEHLFTPPLSTEPDLPEPPE 496

Query: 497 DNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
              AL                            +L  + +   + FAK+L+ W   E
Sbjct: 497 TEAALR-------------------------RRQLERLAKEKPDEFAKLLKTWLSEE 528


>gi|304316908|ref|YP_003852053.1| flagellar M-ring protein FliF [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778410|gb|ADL68969.1| flagellar M-ring protein FliF [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 505

 Score =  293 bits (750), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 111/562 (19%), Positives = 215/562 (38%), Gaps = 73/562 (12%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            I  Q+  F+       + +I I++ +++          + +N P+Y+ LY  L V D  
Sbjct: 7   NIRSQINNFWNKFDKKQKIQIGIISLLLISS---IALLVYIINRPNYEVLYSDLSVKDAG 63

Query: 62  RISVALS-EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK-VNS 119
            +   L  E  I ++I  NGS+I VP+    +ARI LA +G+P      G+   D   NS
Sbjct: 64  AVVDKLKNELKIPYKIEGNGSTILVPAQYKDEARIQLATEGIPQ----DGFSFSDAMNNS 119

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARPTASVMI 177
              T   ++   +  ++ EI  T+++I G+  A+V+IV+PD  +F         TA+VM+
Sbjct: 120 LATTDQERKQKYIYFVQNEIQNTLKAIDGVQDAKVNIVVPDENNFVLSNNDNSSTAAVML 179

Query: 178 RAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIV 234
           +         +    I + V+ +V  L    VT++D  GK+L   N+   +      ++ 
Sbjct: 180 QLKPGVTLTNQQINGITNFVSKSVEGLSPDKVTIIDGNGKVLVAQNDNSLDGASSQYALQ 239

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLS 291
             +Q++++ NI   L    G  N        LN D Q   ++ + P   ++ + RS +  
Sbjct: 240 MKVQNDLQNNIQSLLEQVFGPGNVIVRASVNLNFDKQVQDKVEWQPVIDNNGIIRSTQTI 299

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           K+     ++   +      N P  S           N  K +   NYEIN      T   
Sbjct: 300 KEIANGSSN--GAPAGTATNNPPGSTTYTTQNNGNSNYSKTDTTINYEINQIKTTLTSAQ 357

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
            K++ +S++VVVN   L              +   ++  +VS A G    +  ++++  +
Sbjct: 358 GKIQNISLSVVVNNNNL------------SPTMKQQLTDLVSNAAG---GKNVSVSVMGI 402

Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471
            F  + L      Q      +       +     +   +                     
Sbjct: 403 KFNTDLLNQMKNTQKQTFPYVWLIILGALLLAGGVFYAM--------------------- 441

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
            +   K ++    +  A++T     +   LD +++                   +   ++
Sbjct: 442 -KKKNKELIPATNLEEAMSTEEPGKEIEELDVTSE-----------------KDEKMKQI 483

Query: 532 LHMIEINEERFAKILRKWARSE 553
              I+   +  A+++R W   E
Sbjct: 484 EKFIKQKPDIVAQLIRTWLNEE 505


>gi|304321127|ref|YP_003854770.1| flagellar M-ring protein FliF [Parvularcula bermudensis HTCC2503]
 gi|303300029|gb|ADM09628.1| flagellar M-ring protein FliF [Parvularcula bermudensis HTCC2503]
          Length = 485

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 110/470 (23%), Positives = 193/470 (41%), Gaps = 8/470 (1%)

Query: 36  FMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARI 95
            +A  F         L+  L  +    I   L E  + + I  +GS+I VP     + R+
Sbjct: 14  LLAMVFMAGGRTDALLFSGLSPAASGDIIGKLDEMAVPYTI--DGSAIYVPEGERDRLRL 71

Query: 96  HLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVH 155
            LA  G+P +   +GYE+ D +N F  TS M +    RA EGE+ RTI +I  + AARVH
Sbjct: 72  ELARLGMPPAGG-AGYEILDDLNGFSTTSDMFDAAYWRAKEGELTRTILAIPTVTAARVH 130

Query: 156 IVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
           + +    +FR+     +ASV + A        A++I++L A AVP L    V V+D+   
Sbjct: 131 LGVTRQSAFRRARLDKSASVTVEASGGLSKSQAQSIQYLTALAVPELRPESVAVIDTARG 190

Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           ++       +       I +  +  +   +   L A +G  N R +V  +++  +   +E
Sbjct: 191 VIAGPGATGDESPMGDEIDR--EDRLASRLTHLLEAHVGPGNARVSVAMDIDRQSIAQKE 248

Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE-NTDKKEE 334
            V DPDS+   S  +S+++     S  +  VT+  N+P     + P          +++E
Sbjct: 249 RVIDPDSRQIVSRSISEESDAE--SDADIPVTIASNLPDGDAAEDPEEAGTRLVKRRRDE 306

Query: 335 QSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSA 394
           +  Y               + RLS+AV++N+       G +    +    +  +  +V+ 
Sbjct: 307 EVTYTGTEIERVIETAAGTVRRLSVAVLLNERYTVNEEGETVPAPRSPEEVEALETLVAN 366

Query: 395 ATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTF 454
           A GI   RGD + I  + F   +             ++ R       +++ L+   +  F
Sbjct: 367 AAGIEDERGDRLAIRVLPFEGEEPQLVTAPGFVEAHVMPRAVDIAQFSVLALLVASIAFF 426

Query: 455 LGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSS 504
           +   AL        A+  E   K           + T   P+D  A+  S
Sbjct: 427 VLRPALSPKTPFAQAEIAEGEDKLENLDAAEVLTMLTEENPDDAAAILDS 476


>gi|312621568|ref|YP_004023181.1| flagellar m-ring protein flif [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312202035|gb|ADQ45362.1| flagellar M-ring protein FliF [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 560

 Score =  289 bits (740), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 116/584 (19%), Positives = 230/584 (39%), Gaps = 63/584 (10%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           D L    +  +SL +++ ++      + ++  + A +    PHY  ++  L+  +   I 
Sbjct: 7   DYLKNIKEKWSSLSKSQKIMFVVSSSIILLSVIVAIYITTRPHYVTIFSGLDPKEAAEIQ 66

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             LS+  ID + ++ G++I V    V +A++  A  G P +SS +  +     +S   T 
Sbjct: 67  NILSDQKIDSKAANGGTTILVRDKDVDRAKMAAAQAGYPKNSSITFEDALKLSSSMTATE 126

Query: 125 FMQEITRVRALEGEIARTIQSI-SGIVAARVHIVMPDMGSFR--KIGARPTASVMIRAIN 181
             +  T ++  E EI + ++ +   I  A V++ +P+  +F       +PTASV +    
Sbjct: 127 TDKRRTFIKLKESEIQQALKQMSDYIEDAVVNLSIPEDYTFALKSEAEKPTASVKLTLKK 186

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQAIQH 239
                  E I+  VAA+V  L   +V ++D+ G  L+ N  +    +  K L +  A ++
Sbjct: 187 SLSSDQIEGIQRFVAASVEGLLPENVVIIDNKGNYLSDNSSDTTEGLSSKQLQLKIATKN 246

Query: 240 EIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQ 295
           EIE  I + L +++   ++ + +V  ++N D Q+I E  Y P   DS +  S + +K+  
Sbjct: 247 EIEKKIKELLGSYVSSPEDVKVSVNLDMNFDMQKISETKYSPVLEDSGIVVSKKTTKEEA 306

Query: 296 RSETSQPESAVTVEQNMPHVSDR-KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
           +S  S        + N    + +  +          K +E  NY+ N K I T      +
Sbjct: 307 QSTNSSSSGVPGTDTNPTQNAPQYPITSQGGQSTYTKTDETVNYQNNEKKIETIKAPGTI 366

Query: 355 --ERLSIAVVV-NKGRLTEVLGRSADQGK--------------------IDSYLAEINKI 391
             ++ SIAVV+      T+     ++Q K                        +  I  +
Sbjct: 367 NYDKSSIAVVLYRYVTYTQEDFEKSEQAKNMSWAQFKLQNQNNKRSFLTDQKEVETIINL 426

Query: 392 VSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLL 451
           + +ATGI       +T+             G    +F+D   R     ++ +   +  LL
Sbjct: 427 IKSATGI-----QNVTV------------EGYEIPTFVDKPQRQIP--VDYIYVALAFLL 467

Query: 452 VTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSH 511
           +       L +  +   +K  E+ G   L            L   +        +     
Sbjct: 468 LMVFAASVLIK-ASRSKSKTVELAGVGPLEISEGKPTAEEILHEAEKRKEPEVEEI---- 522

Query: 512 SRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
                  +  +   Q + ++  +++   E  A++LR W   + E
Sbjct: 523 ------NVEEFGVSQYEKQIDKLLKEKPEIVAQLLRNWLNEDWE 560


>gi|295696113|ref|YP_003589351.1| flagellar M-ring protein FliF [Bacillus tusciae DSM 2912]
 gi|295411715|gb|ADG06207.1| flagellar M-ring protein FliF [Bacillus tusciae DSM 2912]
          Length = 506

 Score =  289 bits (739), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 113/558 (20%), Positives = 191/558 (34%), Gaps = 71/558 (12%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           L Q       L   R   L +     ++L +A  ++  +P Y  +Y  L+      ++  
Sbjct: 9   LEQARTMWRGLDPKRRRWLIAGAAAGLVLLVALSWYALAPRYVVIYQNLDAKAAGEVTNK 68

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L E  I +R S  G  + VP     +AR+ LA  GLP S      +LF   N  G++   
Sbjct: 69  LDELKIPYRTS--GGQVMVPEQDADRARMQLAIAGLPKSGYVGYEDLFGNTNIGGMSDNE 126

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA-RPTASVMIRAINPSVY 185
             +  + ALEG +A TI+ I G+   +VH+VMP+   F +    +  ASV ++    +  
Sbjct: 127 FNVKSLMALEGSLAGTIRQIDGVEDVQVHLVMPEQHMFVEQPVGQAKASVFLKIAPGAQL 186

Query: 186 --KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIVQAIQHE 240
                  I+ LV+ +V  L+  DV V+D  G  L   E          + + I +  +  
Sbjct: 187 GPDQVAGIQQLVSHSVKGLNATDVAVVDQNGVRLDHPEDAGTAVSNADRQILIQKQYEQL 246

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQRS 297
           I   +  AL   LG  N      A LN D  +  +    P    + V  S++ S  +   
Sbjct: 247 ISDRLQSALGRILGPGNVVVLANARLNFDQVKSTQSDVRPVVGQNGVPVSVQKSTKSATG 306

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
                         M   +             D+ ++  NYE++          + L+ L
Sbjct: 307 TGVGGVPGTATAGGMATGAPPTYQGATGNGTYDESQQTINYEVSKIVTERVGQPFTLQDL 366

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI--NSRRGDTITITSMDFLE 415
           +++V+VN                    + +I   V  A G   +  +   +T+T M F  
Sbjct: 367 TVSVLVNGQP-------------TPLQVQQIRNYVLTAVGYPNDGTQDQKVTVTGMPFQT 413

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
            Q       QV++                              AL+R       +  E G
Sbjct: 414 AQ----SAPQVAWWARYGWAIGAFAAVAA--------AIGIWFALKR------RRMAEEG 455

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
               + P P  S      +P                            ++Q    +  + 
Sbjct: 456 LPEPVIPAPRPSLFEESELPE---------------------------AEQRRREVEQLA 488

Query: 536 EINEERFAKILRKWARSE 553
               + FA++LR W   E
Sbjct: 489 RTRPQEFAELLRTWLAEE 506


>gi|302874589|ref|YP_003843222.1| flagellar M-ring protein FliF [Clostridium cellulovorans 743B]
 gi|307690800|ref|ZP_07633246.1| flagellar MS-ring protein [Clostridium cellulovorans 743B]
 gi|302577446|gb|ADL51458.1| flagellar M-ring protein FliF [Clostridium cellulovorans 743B]
          Length = 522

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 109/561 (19%), Positives = 222/561 (39%), Gaps = 55/561 (9%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           ++ ++   F     + + R + +  +  V I+  +A         Y  L+  L+ +D   
Sbjct: 7   LIAKIKGIFNG---MSKVRKISIGLITAVVIVAIVALIITTGKTKYTALFNNLDATDSQN 63

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L E  I +++ ++ ++I VP   VG+ R+  AA      S + G E+FD  +  G+
Sbjct: 64  IVTKLKEEGIPYKVENSTNTIMVPDEQVGQLRLQYAAD---IKSGSIGLEIFDTSSQLGI 120

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           +     +   RAL+GEI RT++S   +  A+V+IV+P+  +F K  A  + S+ ++    
Sbjct: 121 SDAEFNVKYQRALQGEIERTVKSFEQVEDAKVNIVLPEDSTFVKDTAPASVSITLKLKPG 180

Query: 183 --SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT------ANEMERNILGKSLSIV 234
                +  +AI  LV+ +V NL   ++ ++D+  +LLT      + +         L   
Sbjct: 181 TELSEEQVKAIVSLVSTSVKNLPKENIQIVDNNMRLLTDKLFKGSEDESSVTASTQLEEK 240

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
              +  +E  I   L    G    ++ V A LN D+        D    +  S  +S   
Sbjct: 241 MKFEDYLEEKILSQLEPMYGQGKVKANVNAVLNFDSVSTETTTVDKTPPIV-SQNIS--I 297

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN-YK 353
             S+ +       V+ N+ +V +  +       N     + +NY  + K I    +    
Sbjct: 298 NASDANNTTGNSPVDNNLSNVINEYMQNG----NISSANQTTNYSTDGKVIERKQNALGN 353

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           +  +S AV ++   LT            +  LA++ K+V+   G   +  D   + + +F
Sbjct: 354 VTAVSAAVAIDNAELT------------ERQLADVKKLVNKTIGQAKQNEDETIVMAYEF 401

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
                    ++Q S  ++ +   A     L  ++G      +GL A   +     +KK E
Sbjct: 402 NPE---LKASIQKSLEEMEAAQKAEAQKKLYTMIGLGAAVVIGLVAFALVLRKRRSKKEE 458

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
           +                  ++  +++ L+    +   + + L     S      D  +  
Sbjct: 459 LE-----------------MIETEDVVLEEMPIENEINFKPLDLEQKSQKDHIEDE-IRK 500

Query: 534 MIEINEERFAKILRKWARSEI 554
             +   ++ A+I++ W  S+ 
Sbjct: 501 YAQNKPDQVAEIIKSWLVSDE 521


>gi|269796398|ref|YP_003315853.1| flagellar basal-body M-ring protein/flagellar hook-basal body
           protein FliF [Sanguibacter keddieii DSM 10542]
 gi|269098583|gb|ACZ23019.1| flagellar basal-body M-ring protein/flagellar hook-basal body
           protein FliF [Sanguibacter keddieii DSM 10542]
          Length = 530

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 104/517 (20%), Positives = 214/517 (41%), Gaps = 36/517 (6%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
             + + P +  LY  L  +D + I   L+   + +++++ GS++ VP+  V   R+ +AA
Sbjct: 42  SMWFSRPQFSPLYTDLAPADASAIVDQLTAQGVKYQLTNGGSTVLVPTESVYDMRLKVAA 101

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
            G+ S S++ GY L D       + F Q++T  RALEGE+ +T+ S+ G+  A V + MP
Sbjct: 102 SGM-SPSADGGYSLLD-DMGMTSSEFQQDVTYKRALEGEMGKTVSSMQGVELATVKLAMP 159

Query: 160 DMGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
               F      PTASV ++  +         ++I +LV+A+V  +   DV V+DS+G +L
Sbjct: 160 AESVFVDQATDPTASVFVKTRSGVTLTDDQVQSIVNLVSASVEGMKATDVAVIDSSGAVL 219

Query: 218 TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
           +A        G +       +  +  +I   L   +GV      V A+L+ D  +  +  
Sbjct: 220 SAVGTGLAGSGGN-KQTVEYEQRVAQSIQAMLEPIVGVGKAVVTVTADLDYDATERTQES 278

Query: 278 YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSN 337
           +     V      +   + +    P + V    N+      +VP   +  +   +  ++N
Sbjct: 279 FSSAEGVLPLTERTTTEEFAGGGNPATGVLGPDNI------QVPNGTADGSYTNETSEAN 332

Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG 397
             ++  +  T      + R S            V             +A++  +VS+A+G
Sbjct: 333 NAVDKLTEHTVTAPGTVRRQS------------VAVAVDAAAAAAVDMAQLQAMVSSASG 380

Query: 398 INSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA--TVINALVFLVGTLLVTFL 455
            +  RGD +T++ M F  +   ++     +  +  +   +   +   ++     L +  L
Sbjct: 381 FDEARGDVVTVSQMPFDTSAAESAQAALDAAAEAEAAAASSRMMQTYVIAGAALLALVLL 440

Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL 515
            +   RR  N +D ++    G   +   P+  A+    +    + L    +   +   ++
Sbjct: 441 AIFLARRGRNREDPRESLDLGDLPIMDEPL--ALEPADLDTQLLELPEVPELPSAEQVSI 498

Query: 516 QSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
           + + N          +  +++   E+ A++LR W   
Sbjct: 499 ERKRND---------VALLVDEQPEQVAELLRGWMDE 526


>gi|325273535|ref|ZP_08139767.1| flagellar MS-ring protein [Pseudomonas sp. TJI-51]
 gi|324101328|gb|EGB98942.1| flagellar MS-ring protein [Pseudomonas sp. TJI-51]
          Length = 424

 Score =  286 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 89/446 (19%), Positives = 180/446 (40%), Gaps = 65/446 (14%)

Query: 152 ARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTV 209
           ARVH+ +P    F +   +P+ASV++        +     AI +LVA +VP LD   VTV
Sbjct: 1   ARVHLAIPKSSVFVRDERKPSASVLVELYPGRALEPGQVMAIVNLVATSVPELDKSQVTV 60

Query: 210 LDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELN 267
           +D  G LL+    +  +   GK     + ++  +   ++  L   LG D +++ V A+L+
Sbjct: 61  VDQKGNLLSEQIQDSALTQAGKQFDYSRRVESMLTQRVHNILQPVLGNDRYKAEVSADLD 120

Query: 268 MDTQQIREIVYDPDSKVERSIRLSKDAQRSE----------TSQPESAVTVEQ------- 310
               +     ++PD    RS +   + + S           ++QP  A T  Q       
Sbjct: 121 FSAVESTSEQFNPDQPALRSEQSVDEQRASSQGPQGVPGALSNQPPGAATAPQTTGGAAT 180

Query: 311 --------------NMPHVSDRKVPLP--RSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
                         N   + D     P      +  +++   N+E++     T     ++
Sbjct: 181 PAAAIQPGQPLVDANGQQIMDPATGQPMLAPYPSDKRQQSTKNFELDRSISHTRQQQGRM 240

Query: 355 ERLSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
            RLS+AVVV ++ ++    G +         LA   ++V  A G ++ RGD++T+ ++ F
Sbjct: 241 TRLSVAVVVDDQVKIDPATGDATRAPWGSEDLARFTRLVQDAVGFDASRGDSVTVINVPF 300

Query: 414 LENQLFNSGTV----QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
             ++      +    Q  F DI+ +           ++G + +  L    LR + N    
Sbjct: 301 AADRGEEIADIAFYQQPWFWDIVKQ-----------VLGVVFILVLVFGVLRPVLNNITG 349

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF-SHSRNLQSRINSYVSKQSD 528
              +    S +    +      G + ND ++L      +  S S   ++++N+       
Sbjct: 350 GGKQAAPDSDMELGGMMG--LDGELANDRVSLGGPTSILLPSPSEGYEAQLNA------- 400

Query: 529 LRLLHMIEINEERFAKILRKWARSEI 554
             +  ++  +  R A+++++W  ++ 
Sbjct: 401 --IKGLVAEDPGRVAQVVKEWINADE 424


>gi|312135854|ref|YP_004003192.1| flagellar m-ring protein flif [Caldicellulosiruptor owensensis OL]
 gi|311775905|gb|ADQ05392.1| flagellar M-ring protein FliF [Caldicellulosiruptor owensensis OL]
          Length = 560

 Score =  286 bits (732), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 120/587 (20%), Positives = 236/587 (40%), Gaps = 70/587 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L  + + +       +  ++I +S+IL+ +++ +   +    PHY  ++  L+  +   I
Sbjct: 9   LKNIKEKWDKFAKSQKIMLVISSSIILLSVIIAL---YITTRPHYVTIFSGLDPKEAAEI 65

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L+E  ID ++++ G++I V  + V +A++  A  G P +SS +  +     +S   T
Sbjct: 66  QNILNEQKIDSKVANGGTTILVRDTDVDRAKMAAAQAGYPKNSSITFEDALKLSSSMTAT 125

Query: 124 SFMQEITRVRALEGEIARTIQSI-SGIVAARVHIVMPDMGSFR--KIGARPTASVMIRAI 180
              +  T ++  E EI   ++ +   I  A V++ +P+  +F       +PTASV +   
Sbjct: 126 ESDKRRTFIKLKESEIQEALKQMSDYIEDAVVNLSVPEDYTFALKDEATKPTASVKLTLK 185

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQAIQ 238
                   E I+  VAA+V  L   +V ++D+ G  L++N  +    +  K L I  A +
Sbjct: 186 KSLGSNQIEGIQRFVAASVEGLLPENVVIIDNKGNYLSSNSSDTTEGLSSKQLQIKIATK 245

Query: 239 HEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDA 294
           +EIE  + + L +++   ++ + +V  ++N D Q+I E  Y P   DS +  S + +K+ 
Sbjct: 246 NEIEKKVKELLGSYVSSPEDVKVSVNLDMNFDMQKISETKYFPVLEDSGIVVSKKTTKEE 305

Query: 295 QRSETSQPESAVTVEQNMPHVSDR-KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
            +S  S        + N    + +  +          K +E  NY+ N K I T      
Sbjct: 306 AQSTNSSSSGVPGTDTNPTQNTTQYPISSQGGQSTYTKTDETVNYQNNEKKIETIKAPGT 365

Query: 354 L--ERLSIAVVV-NKGRLTEVLGRSADQGK--------------------IDSYLAEINK 390
           +  +R SIAVV+      T+     +DQ K                        +  I  
Sbjct: 366 INYDRSSIAVVLYRYVTYTQEDFEKSDQAKNMNWAQFKLQNQNNKRSFLTDQKEIETIVN 425

Query: 391 IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA--TVINALVFLVG 448
           ++ +ATGI       +T+             G    +F+D   R      +  AL FL+ 
Sbjct: 426 LIKSATGI-----QNVTV------------EGYEVPTFVDRPQRQIPVDYIYVALAFLLL 468

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
            +    L + A     +    ++ E+ G   +            L   +           
Sbjct: 469 MVFAASLLIKA-----SKSKPRRLELAGVGPVEISEEKPVAEEILQEAEK---------- 513

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
              +   +  I  +   Q + ++  +++   E  A++LR W   + E
Sbjct: 514 RKEAEVEEINIEEFGVSQYEKQIDKLLKEKPEIVAQLLRNWLNEDWE 560


>gi|82523970|emb|CAI78781.1| flagellar biosynthesis/type III secretory pathway lipoprotein
           [uncultured epsilon proteobacterium]
          Length = 572

 Score =  286 bits (732), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 105/460 (22%), Positives = 201/460 (43%), Gaps = 20/460 (4%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVIL-VPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           +  QL+  +   T   R  I      I+   I + +          ++ L+  L  +D  
Sbjct: 6   LFSQLVVLYTKLTKQQRIIIAAAIIGIVGFLIFMVVYTSKNTKESKFEVLFDSLSSADAA 65

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           ++   L +  I++ I DN + I VP  +V K RI +AA G+P  S   G+ELFD    FG
Sbjct: 66  KVVEQLEKDGIEYEIEDN-NVIRVPRDVVYKQRISIAALGIPKDSG-VGFELFD-TQEFG 122

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
            TSF Q I  +RALEGE++RTI +++ I +A V + +P    F +    PTASVMI  + 
Sbjct: 123 ATSFDQNIKYLRALEGELSRTINALAPIESASVSLALPKETLFVEKSVSPTASVMITLVE 182

Query: 182 PSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLSIVQA 236
                 K    I++LVA+AV  L   +V +++S G+ L   +       +        + 
Sbjct: 183 GRNLSSKQVRGIKNLVASAVTKLTPANVMLVNSDGETLGDEDEMAQMGELSSVQQKYKEK 242

Query: 237 IQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            + + +  I + L+ F+ G     + V  E +   +      +DP++ V RS + S++ +
Sbjct: 243 EEKKRQKKIIQVLSPFVGGTKKVVAQVTIEFDFSIKNSTSETFDPEN-VVRSEQNSEEKR 301

Query: 296 RSETSQPESAVTVEQNMPHVSD-RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
             E   P     V   + ++   + +   ++ E  +K    +NYE+      T     ++
Sbjct: 302 --EGGAPAEVGGVPGTVSNIGPVQGLKSNQTSEKYEKSTGTTNYEVGKTVSTTKSQFARI 359

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQ------GKIDSYLAEINKIVSAATGINSRRGDTITI 408
            R++ AV+V+     ++                ++ +  I+ +  ++ GI+  RGD +++
Sbjct: 360 NRITAAVIVDGKYKNKLNADGVPTEELEYLPLDETDIQAISSLAGSSIGIDEARGDQLSV 419

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++ F  +++          +     + A       ++  
Sbjct: 420 KNLQFKRDKVSVGEDGVSQALVFSETYLAPFSGLFKYIFV 459


>gi|312126819|ref|YP_003991693.1| flagellar m-ring protein flif [Caldicellulosiruptor hydrothermalis
           108]
 gi|311776838|gb|ADQ06324.1| flagellar M-ring protein FliF [Caldicellulosiruptor hydrothermalis
           108]
          Length = 560

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 118/584 (20%), Positives = 231/584 (39%), Gaps = 63/584 (10%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           D L    +  +SL +++ ++L     + ++  +AA +    PHY  ++  L+  +   I 
Sbjct: 7   DFLKNIKEKWSSLSKSQKIMLVVSSSIILLSVIAAIYITTRPHYVTIFSGLDPKEAAEIQ 66

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             LSE  ID + ++ G++I V  + V +A++  A  G P +SS +  +     +S   T 
Sbjct: 67  NILSEQKIDSKAANGGTTILVRDTDVDRAKMAAAQAGYPKNSSITFEDALKLSSSMTATE 126

Query: 125 FMQEITRVRALEGEIARTIQSI-SGIVAARVHIVMPDMGSFR--KIGARPTASVMIRAIN 181
             +  T ++  E EI + ++ +   I  A V++ +P+  +F       +PTASV +    
Sbjct: 127 ADKRRTFIKLKESEIQQALKQMSDYIEDAVVNLSIPEDYTFALKSEATKPTASVKLTLKK 186

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQAIQH 239
                  E I+  VAA+V  L   +V ++D+ G  L++N  +    +  K L +  A ++
Sbjct: 187 SLSSDQIEGIQRFVAASVEGLLPENVVIIDNKGNYLSSNSSDTTEGLSSKQLQLKIATKN 246

Query: 240 EIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQ 295
           EIE  + + L +++   ++ + +V  ++N D Q+I E  Y P   DS +  S + +K+  
Sbjct: 247 EIEKKVKELLGSYVSSPEDVKVSVNLDMNFDMQKISETKYSPVLEDSGIVVSKKTTKEEA 306

Query: 296 RSETSQPESAVTVEQNMPHVSDR-KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
           +S  S        + N    + +  +          K +E  NY+ N K I T      +
Sbjct: 307 QSTNSSSSGVPGTDTNPTQNTTQYPISSQGGQSTYTKTDETVNYQNNEKKIETIKAPGTI 366

Query: 355 --ERLSIAVVV-NKGRLTEVLGRSADQGK--------------------IDSYLAEINKI 391
             ++ SIAVV+      T+     +DQ K                        +  I  +
Sbjct: 367 NYDKSSIAVVLYRYVTYTQEDFEKSDQAKNMSWAQFKLQNQNNKRSFLTDQKEVETIVNL 426

Query: 392 VSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLL 451
           + +ATGI       +T+             G    +F+D   R        +      L+
Sbjct: 427 IKSATGI-----QNVTV------------EGYEIPTFVDKPQRQIPVDYIYVALAFLLLM 469

Query: 452 VTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSH 511
           V    L            +   VG   I    P++  +                 +    
Sbjct: 470 VFAASLLIKASKSKPRTVELAGVGPVEISEEKPVAEEILQ-------------EAEKRKK 516

Query: 512 SRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           +   +  +  +   Q + ++  +++   E  A++LR W   + E
Sbjct: 517 AEVEEINVEEFGVSQYEKQIDKLLKEKPEIVAQLLRNWLNEDWE 560


>gi|330899425|gb|EGH30844.1| flagellar MS-ring protein [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 319

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 142/296 (47%), Gaps = 4/296 (1%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           + F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L
Sbjct: 24  MSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + ANI++ +  N  ++ V S  V +ARI LA  G+  + +N G+E+ DK    G + FM+
Sbjct: 84  TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
                R LEGE+ARTI +++ +  ARVH+ +P    F +   +P+ASV++        + 
Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP L    +TV+D  G LL+  A   E  + GK     + ++  +  
Sbjct: 204 SQVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
            +   L   LG D +++ V A ++    +     ++PD    RS +   + + S +
Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNEQRSSSS 319


>gi|312876496|ref|ZP_07736479.1| flagellar M-ring protein FliF [Caldicellulosiruptor lactoaceticus
           6A]
 gi|311796707|gb|EFR13053.1| flagellar M-ring protein FliF [Caldicellulosiruptor lactoaceticus
           6A]
          Length = 560

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 126/586 (21%), Positives = 235/586 (40%), Gaps = 67/586 (11%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           D L    +  +SL +++ ++L     + ++  +AA +    PHY  ++  L+  +   I 
Sbjct: 7   DFLKNIKEKWSSLSKSQKIMLVVSSSIILLSVIAAIYITTRPHYVTIFSGLDPKEAAEIQ 66

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             LSE  ID + ++ G++I V  + V +A++  A  G P +SS +  +     +S   T 
Sbjct: 67  NILSEQKIDSKAANGGTTILVRDTDVDRAKMAAAQAGYPKNSSITFEDALKLSSSMTATE 126

Query: 125 FMQEITRVRALEGEIARTIQSI-SGIVAARVHIVMPDMGSFR--KIGARPTASVMIRAIN 181
             +  T ++  E EI   ++ +   I  A V++ +P+  +F       +PTASV +    
Sbjct: 127 ADKRRTFIKLKESEIQEALKQMSDYIEDAVVNLSVPEDYTFALKSEATKPTASVKLTLKK 186

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQAIQH 239
                  E I+  VAA+V  L   +V ++D+ G  L+ N  +    +  K L +  A ++
Sbjct: 187 SLSSDQIEGIQRFVAASVEGLLPENVVIIDNKGNYLSENSSDSTEGLSSKQLQLKIATKN 246

Query: 240 EIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQ 295
           EIE  + + L +++   ++ + +V  ++N D Q+I E  Y P   DS +  S + +K+  
Sbjct: 247 EIEKKVKELLGSYVSSPEDVKVSVNLDMNFDMQKISETKYSPVLEDSGIVVSKKTTKEEA 306

Query: 296 RSETSQPESAVTVEQNMPHVSDR-KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
           +S  S        + N    + +  +          K +E  NY+ N K I T      +
Sbjct: 307 QSTNSSSSGVPGTDTNPTQNTPQYPISSQGGQSTYTKTDETVNYQNNEKKIETIKAPGTI 366

Query: 355 --ERLSIAVVV-NKGRLTEVLGRSADQGKI--------------------DSYLAEINKI 391
             +  SIAVV+      T+     +DQ K                        +  I  +
Sbjct: 367 NYDNSSIAVVLYRYVTYTQEDFEKSDQAKTMSWAQFKLQNQNNKRSFLTDQKEVETIVNL 426

Query: 392 VSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA--TVINALVFLVGT 449
           + +ATGI       +T+             G    +F+D   R      +  AL FL+  
Sbjct: 427 IKSATGI-----QNVTV------------EGYEVPTFVDKPQRQIPVDYIYIALAFLLLM 469

Query: 450 LLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF 509
                L + A R        +   VG   I    P +  +  G+       ++  N + F
Sbjct: 470 AFAASLLIKATR--SKPRRLELAGVGPVEISEEKPTAEEILQGIEKKKEPEVEEINVEEF 527

Query: 510 SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
             S             Q + ++  +++   E  A++LR W   + E
Sbjct: 528 GVS-------------QYEKQIDKLLKEKPEIVAQLLRNWLNEDWE 560


>gi|114800445|ref|YP_758973.1| flagellar MS-ring protein [Hyphomonas neptunium ATCC 15444]
 gi|114740619|gb|ABI78744.1| flagellar M-ring protein FliF [Hyphomonas neptunium ATCC 15444]
          Length = 528

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 130/556 (23%), Positives = 218/556 (39%), Gaps = 40/556 (7%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           ++F  +  +L  +R L+LA+ +   I                 LY  LE +    I   L
Sbjct: 1   MKFLDTLKALPVSRQLMLAAAVAGMIAAMSFLVQGATRDPMTLLYSGLEPAHAGDIIKEL 60

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
            ++   + I   G +I VP       R  LA QGLP  S   GYEL D+VN F +TS M 
Sbjct: 61  EQSGTPYEIK--GEAIFVPQGKRDAIRFTLAQQGLPRPSVQ-GYELLDEVNGFSVTSEMY 117

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187
                RA EGE+ RTI +I G+ +ARVHI       F +     TASV +          
Sbjct: 118 NAAYWRAKEGELTRTILAIPGVSSARVHIGANLRSGFSRSQPNQTASVTLTTARDMTAGQ 177

Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINK 247
           AEAI+++VA AV  L   DV V+D    +L   +  R       +  QA    +E  I  
Sbjct: 178 AEAIQYMVALAVAGLRAEDVAVIDPVKGILAGPKANRTEEPAVAAATQA--SLLEQKILS 235

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVT 307
            L   +GV N R +   +++   Q    + +DP+S+V R+   +     S  +     +T
Sbjct: 236 LLEPRVGVGNARVSATVDVSRQRQVTSAVTFDPNSRVIRNRTTNDSTGASAGAG--GGMT 293

Query: 308 VEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367
           V  N+P   +       + +N+    E  +YEIN           +++R++IAV++N+  
Sbjct: 294 VASNLPQGGEGGGGNTSTNKNST---ETVSYEINETRTEVETLPGEVQRITIAVLLNEQA 350

Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVS 427
           L      +          A+  +++++A GI++ RGDTI+I  M F    + +   V   
Sbjct: 351 LGIDPAAADVATLTQQMAADFEQLIASAAGIDTARGDTISIELMPFQAVPVDDLIEVPGM 410

Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISS 487
              ++ R+F + + A                               + G  ++       
Sbjct: 411 VEQLMERYFWSGLQA------------------------------LLLGLVVIVLGVGVV 440

Query: 488 AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILR 547
                    D ++ +       +          + V       L       +E  A +L+
Sbjct: 441 RPMLVQKSKDALSPEDLGAGAGAEGAGRAVASGADVESDPFAYLKDYATDRQEETAALLQ 500

Query: 548 KWARSEIEDRYTQHIS 563
           +W   + +   T  I+
Sbjct: 501 QWLTEDQQSGQTDQIA 516


>gi|222530139|ref|YP_002574021.1| flagellar M-ring protein FliF [Caldicellulosiruptor bescii DSM
           6725]
 gi|222456986|gb|ACM61248.1| flagellar M-ring protein FliF [Caldicellulosiruptor bescii DSM
           6725]
          Length = 560

 Score =  284 bits (726), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 117/585 (20%), Positives = 234/585 (40%), Gaps = 66/585 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L  + + + S +   +   ++ +S+IL+ +++   A +    PHY  ++  L+  +   I
Sbjct: 9   LKSIKEKWSSFSKSQKIMFVVSSSIILLSVIV---AIYITTRPHYITIFSGLDPKEAAEI 65

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              LS+  ID + ++ G++I V  + V +A++  A  G P +SS +  +     +S   T
Sbjct: 66  QNILSDQKIDSKAANGGTTILVRDTDVDRAKMAAAQAGYPKNSSITFEDALKLSSSMTAT 125

Query: 124 SFMQEITRVRALEGEIARTIQSI-SGIVAARVHIVMPDMGSFR--KIGARPTASVMIRAI 180
              +  T ++  E EI + ++ +   I  A V++ +P+  +F       +PTASV +   
Sbjct: 126 EADKRRTFIKLKESEIQQALKQMSDYIEDAVVNLSIPEDYTFALKSEAEKPTASVKLTLK 185

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQAIQ 238
                   E I+  VAA+V  L   +V ++D+ G  L+ N  +    +  K L +  A +
Sbjct: 186 KSLSSDQIEGIQRFVAASVEGLLPENVVIIDNKGNYLSDNSSDTTEGLSSKQLQLKIATK 245

Query: 239 HEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDA 294
           +EIE  I + L +++   ++ + +V  ++N D Q+I E  Y P   DS +  S + +K+ 
Sbjct: 246 NEIEKKIKELLGSYVSSPEDVKVSVNLDMNFDMQKISETKYSPVLEDSGIVVSKKTTKEE 305

Query: 295 QRSETSQPESAVTVEQNMPHVSDR-KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
            +S  S        + N    + +  +          K +E  NY+ N K I T      
Sbjct: 306 AQSTNSSSSGVPGTDTNPTQNAPQYPITSQGGQSTYTKTDETVNYQNNEKKIETIKAPGT 365

Query: 354 L--ERLSIAVVV-NKGRLTEVLGRSADQGK--------------------IDSYLAEINK 390
           +  ++ SIAVV+      T+     ++Q K                        +  I  
Sbjct: 366 INYDKSSIAVVLYRYVTYTQEDFEKSEQAKNMSWAQFKLQNQNNKRSFLTDQKEVETIIN 425

Query: 391 IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL 450
           ++ +ATGI       +T+             G    +F+D   R     ++ +   +  L
Sbjct: 426 LIKSATGI-----QNVTV------------EGYEIPTFVDKPQRQIP--VDYIYVALAFL 466

Query: 451 LVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFS 510
           L+       L +  +   +K  E+ G   L            L   +        +    
Sbjct: 467 LLMVFAASVLIK-ASRSKSKTVELAGVGPLEISEGKPTAEEILHEAEKRKEPEVEEI--- 522

Query: 511 HSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
                   +  +   Q + ++  +++   E  A++LR W   + E
Sbjct: 523 -------NVEEFGVSQYEKQIDKLLKEKPEIVAQLLRNWLNEDWE 560


>gi|296531738|ref|ZP_06894564.1| flagellar M-ring protein FliF [Roseomonas cervicalis ATCC 49957]
 gi|296267937|gb|EFH13738.1| flagellar M-ring protein FliF [Roseomonas cervicalis ATCC 49957]
          Length = 472

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 129/371 (34%), Positives = 198/371 (53%), Gaps = 9/371 (2%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSG 110
           LY  LE ++  RIS  L E  I      +G +I VP   V + R+ LAA+GLP     +G
Sbjct: 56  LYAGLEPAEAGRISARLEELKIPVEARGDG-TILVPMDQVARLRMQLAAEGLPRQGG-AG 113

Query: 111 YELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR 170
           YEL D+ +   +TSFMQ + R+RALEGE+ARTI ++ G+ AARVHIV+P+  SF +    
Sbjct: 114 YELLDQTSPMQMTSFMQRVQRLRALEGELARTIVTMQGVRAARVHIVLPERESFSRDAPP 173

Query: 171 PTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG 228
           PTASV +            A AIR LVA AVP L   DV+V+D  G +L A+       G
Sbjct: 174 PTASVTVTTSAGQRLGAAQAAAIRLLVAGAVPRLRQEDVSVMDGNGVVLAADGGMGAAAG 233

Query: 229 KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288
           +   I  A +H ++  +   L   +G    R+    E+       R   +DP  +VER  
Sbjct: 234 RLGEIRVAQEHALQKAVLDLLEPLVGRGKVRAVASVEVEGARTVARAETFDPLGQVERGR 293

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           +L  + + SE  + ++ VTV QN+P+    +    RS+    +  E  N+EI++K   T 
Sbjct: 294 QLQTEQENSEDGRGQAPVTVGQNLPNQQVNQ-NATRSVSAVQRNNETVNFEISSKVEETV 352

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
            +   ++R+S+AVVV+   +T+  G    Q +  + L  +  +V +A G N +RGDT+T+
Sbjct: 353 REPGAVKRVSVAVVVDG--ITDAEGNV--QPRPPAELERLAALVRSAVGYNQQRGDTVTV 408

Query: 409 TSMDFLENQLF 419
            ++ FL ++  
Sbjct: 409 DTLRFLPDEGL 419


>gi|312792647|ref|YP_004025570.1| flagellar m-ring protein flif [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312179787|gb|ADQ39957.1| flagellar M-ring protein FliF [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 560

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 126/587 (21%), Positives = 238/587 (40%), Gaps = 70/587 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L  + + + S ++  +  +++ +S+IL+ +   +AA +    PHY  ++  L+  +   I
Sbjct: 9   LKNIKEKWSSLSNSQKIMLVVSSSIILLSV---IAAIYITTRPHYVTIFSGLDPKEAAEI 65

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              LSE  ID + ++ G++I V  + V +A++  A  G P +SS +  +     +S   T
Sbjct: 66  QNILSEQKIDSKAANGGTTILVRDTDVDRAKMAAAQAGYPKNSSITFEDALKLSSSMTAT 125

Query: 124 SFMQEITRVRALEGEIARTIQSI-SGIVAARVHIVMPDMGSFR--KIGARPTASVMIRAI 180
              +  T ++  E EI   ++ +   I  A V++ +P+  +F       +PTASV +   
Sbjct: 126 EADKRRTFIKLKESEIQEALKQMSDYIEDAVVNLSVPEDYTFALKSEATKPTASVKLTLK 185

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQAIQ 238
                   E I+  VAA+V  L   +V ++D+ G  L+ N  +    +  K L +  A +
Sbjct: 186 KSLSSDQIEGIQRFVAASVEGLLPENVVIIDNKGNYLSENSSDSTEGLSSKQLQLKIATK 245

Query: 239 HEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDA 294
           +EIE  + + L +++   ++ + +V  ++N D Q+I E  Y P   DS +  S + +K+ 
Sbjct: 246 NEIEKKVKELLGSYVSSPEDVKVSVNLDMNFDMQKISETKYSPVLEDSGIVVSKKTTKEE 305

Query: 295 QRSETSQPESAVTVEQNMPHVSDR-KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
            +S  S        + N    + +  +          K +E  NY+ N K I T      
Sbjct: 306 AQSTNSSSSGVPGTDTNPTQNTPQYPISSQGGQSTYTKTDETVNYQNNEKKIETIKAPGT 365

Query: 354 L--ERLSIAVVV-NKGRLTEVLGRSADQGKI--------------------DSYLAEINK 390
           +  +  SIAVV+      T+     +DQ K                        +  I  
Sbjct: 366 INYDNSSIAVVLYRYVTYTQEDFEKSDQAKTMSWAQFKLQNQNNKRSFLTDQKEVETIVN 425

Query: 391 IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA--TVINALVFLVG 448
           ++ +ATGI       +T+             G    +F+D   R      +  AL FL+ 
Sbjct: 426 LIKSATGI-----QNVTV------------EGYEVPTFVDKPQRQIPVDYIYIALAFLLL 468

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
                 L + A R        +   VG   I    P +  +  G+       ++  N + 
Sbjct: 469 MAFAASLLIKATR--SKPRRLELAGVGPVEISEEKPTAEEILQGIEKKKEPEVEEINVEE 526

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           F  S             Q + ++  +++   E  A++LR W   + E
Sbjct: 527 FGVS-------------QYEKQIDKLLKEKPEIVAQLLRNWLNEDWE 560


>gi|86157820|ref|YP_464605.1| flagellar M-ring protein FliF [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774331|gb|ABC81168.1| flagellar M-ring protein FliF [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 533

 Score =  283 bits (724), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 125/558 (22%), Positives = 226/558 (40%), Gaps = 49/558 (8%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +L QL +  +   +L     L+L +  L  I +            Y   +  L   D   
Sbjct: 4   LLKQLRELPRLLGALPGGLKLVLVAGALAAIGVAALTAVRSAE-AYQYAFTNLTPEDSAE 62

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
            + AL  A + +R+   GS+++VP+S V  AR+ LA  GLP      G+E+FD+    G+
Sbjct: 63  AAGALGAAGVPYRLEAGGSALAVPASRVYDARLLLAGAGLPRGGG-VGFEIFDR-GDLGV 120

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           + F Q++   RA EGE+ARTI  ++ + +ARVH+ +P+ G +R       A+V++     
Sbjct: 121 SEFTQKVNLRRATEGELARTISRLAQVRSARVHLTLPEKGLYRDQDRPAAAAVVVNLQPG 180

Query: 183 SVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240
                     IRHLV++AVP L    V+V+D  G++++    +   LG+++   + ++ +
Sbjct: 181 RTLGQREISGIRHLVSSAVPGLAPAGVSVVDGRGEVIS----DEGALGEAIGYQRRMERD 236

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           +E  I   L   +G     + V A L+    Q    V DPDS   RS R       S+ +
Sbjct: 237 LERRIVDLLGQAVGAGAVVARVTASLDQTEIQSSAQVLDPDSATLRSERKLTQQSSSDGA 296

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
            P        N P       P  R   +   +++  NY+++T +  +     +LERLS+A
Sbjct: 297 GPAGVAGAAANQPLAPPAPAPGARGRSSASTEDQTRNYDVSTTTTTSVARVPRLERLSVA 356

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           V+V+          +  Q + D+ +A + ++   A G ++ RGDT  I+S  F+  +   
Sbjct: 357 VLVDG---------AGGQPRADAEIARLGELAKRAVGFDADRGDTFEISSSPFVRAEEPA 407

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
           +                                 L      R   +       +   ++ 
Sbjct: 408 APPAPPPT--------------------------LLERPAVRWGALGAGALVGLALLALA 441

Query: 481 SPPPISSAVTT--GLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS---DLRLLHMI 535
                  A      + P   +A   +     +      +  ++ ++  S     R   + 
Sbjct: 442 LRRRRPPAAPEVLPIRPGARVAEIEAALARDAALPGAPAPRSAALADPSATLRDRARDLA 501

Query: 536 EINEERFAKILRKWARSE 553
             +  R A +L+ W   E
Sbjct: 502 TQDPTRTAHLLKAWIAQE 519


>gi|168698710|ref|ZP_02730987.1| Flagellar FliF M-ring protein [Gemmata obscuriglobus UQM 2246]
          Length = 523

 Score =  283 bits (723), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 114/552 (20%), Positives = 207/552 (37%), Gaps = 44/552 (7%)

Query: 1   MAILDQLLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVK-LEVS 58
           M + ++LL+  ++    L   R + +    L  ++   A  +      Y  L    L   
Sbjct: 1   MDVFNRLLEQARAYWAGLSAGRRIGVVLSFLGVLLALGAVVYLSPGGRYTPLGAGPLPPE 60

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
           DV+ +   LS   I FR+S  G+ I VP     +A + LA  G+P+     G+E+FD+  
Sbjct: 61  DVSAMRTRLSGDGIPFRLSSGGTGIEVPDERYAEAVVSLAGAGIPARGGK-GFEVFDET- 118

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178
           S   T F+Q +   RAL+ E+AR+I  +  + +ARV I  P+   F +    PTASV+I+
Sbjct: 119 SLMTTPFVQSVNYQRALQAELARSIMQMESVQSARVMIAKPEPSPFVRDQKNPTASVVIK 178

Query: 179 AINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIV 234
                     +A AI  LVA ++  L   +VTV+++ G+LL+         +    L  +
Sbjct: 179 LKPRMTMNPATAGAIVSLVAHSIEGLRPENVTVMETGGRLLSDPNAAARSGLPTPQLEYI 238

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
           + ++  +     + L+  LG       V A++N    + R   Y PD +V  + R +   
Sbjct: 239 ERLETYLSTKAEEMLSKTLGPGRAVIRVSADVNFQKIKERVKTYSPDGRVGVAERTANST 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
             S  ++         N+                + ++  Q+++ ++         +  +
Sbjct: 299 --STGTRAGGVTGATANITRTGGSTANAGSGGGTSKEEVIQTDFLVSETLRDIEEGSGAV 356

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
            RLS+A +V+   LT   G++         +      +  A G    R D++TI     L
Sbjct: 357 TRLSVAALVD---LTAADGQAVISQADAEEI------IRQAVGFRPGR-DSVTIARAP-L 405

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
                      +  +  +  + +   N  V     L    +GL  LRR            
Sbjct: 406 TGPNAGEPDDTLVRLQRIQTYVSLARNLSVAFAAVLSFLVIGLLLLRR------------ 453

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
                  P P +   T      +      +     +     + R N+       +R   M
Sbjct: 454 ------RPVPEAQGATGTEPGAETAGAGPTGPVAPTPPPTTEERRNAE-----LIRFQTM 502

Query: 535 IEINEERFAKIL 546
                     +L
Sbjct: 503 ARNEPATVVHVL 514


>gi|154249519|ref|YP_001410344.1| flagellar M-ring protein FliF [Fervidobacterium nodosum Rt17-B1]
 gi|154153455|gb|ABS60687.1| flagellar M-ring protein FliF [Fervidobacterium nodosum Rt17-B1]
          Length = 535

 Score =  282 bits (722), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 109/570 (19%), Positives = 223/570 (39%), Gaps = 54/570 (9%)

Query: 1   MAILDQLLQFF----KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLE 56
           M    + + +F    +   +L + + L++  +I   I+  +     VN+P Y  L     
Sbjct: 1   MDWFRKFVDWFAKFPEKWKALQKGQKLVIIMIIASVILAIILLAI-VNAPKYVLLLTTRT 59

Query: 57  VSDVNRISVALSEANIDFRISDNGSSISVPSS-MVGKARIHLAAQGLPSSSSNSGYELFD 115
             D   +   L    I +++   G+ I +PSS  V + R+ LA+ G+ S SS  G+E+ D
Sbjct: 60  EQDAGSVIQQLETLGIPYKVEA-GNRILIPSSYNVYEVRMRLASTGILSGSSR-GFEILD 117

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK-IGARPTAS 174
           +  S G TSF +++    AL+GE+ RTI +I G+ ++RV + +P    + +   + P AS
Sbjct: 118 QT-SLGATSFDKQVRYQIALQGELERTISTIKGVQSSRVVLTLPKYTYYVRGEMSEPRAS 176

Query: 175 VMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGK 229
           VM+          +  + I  L+  AV  +   ++ ++D TG+ LTA    +    +   
Sbjct: 177 VMVVMDPGQSLSKEQVKGIVSLIQGAVEGIKTENIKIIDQTGQDLTAMLNLDQSTALAST 236

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
            + +   +++  +  I   L    G          +LN +  + +   Y   +K E  +R
Sbjct: 237 KMELKVNLENYYKQKIKVPLENIFGPGRVEVIPDVKLNWEKVEKQITTYTAPNKKEGLVR 296

Query: 290 LSK-DAQRSETSQP-ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
             + +++ S TSQ     V  E N+P  +         +    K  E  NYE+N      
Sbjct: 297 SKETESEYSTTSQGAGGPVGTESNIPPTTYESTEGTG-VTTYQKSHEIVNYELNQVIENI 355

Query: 348 THDN-YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD-T 405
             +   ++E ++++VV++            ++   D     I  I+  +   N+  G  T
Sbjct: 356 VKNTEGEIENITVSVVIDSSS------TVLERTSKDEVQNYIKTIIEKSISANTPNGSVT 409

Query: 406 ITITSMDF---LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
             +  + F   ++ Q +           + +R    +I  L+  +     ++LGL   R+
Sbjct: 410 YAVAFLPFSREIQEQFYKELQTTTEIQKLRTR----LILVLLASILIFFASYLGLIQFRK 465

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
           +      ++              +      +   + +      + I    +    +++  
Sbjct: 466 IKARKMIQE------RYKLLQEEAQRALEAIEQAEEVQPGGEEEAILEQLKEYLQQVS-- 517

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARS 552
                        E + E  A +L+ W   
Sbjct: 518 -------------EASPEEVATVLKVWISE 534


>gi|4378873|gb|AAD19741.1| flagellar M-Ring protein [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 555

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 105/500 (21%), Positives = 194/500 (38%), Gaps = 66/500 (13%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++++ +  K        +  +    ++    +     F +++P   +LY      D   I
Sbjct: 34  VNKVYERVKDFVQQPAIKRSLPLMGLISLTAIGALIWFLLSAPTQRDLYPGARDGDRASI 93

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           + AL    I + I      I+V      KAR  LA QGLP S+ +  +         G +
Sbjct: 94  ARALETGGIHYNIKRGNGVITVSEKEFYKARDLLAQQGLPKSAPDGVH--VISSLPLGAS 151

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
             ++      A E  +ARTI++I  +  ARVHI  P    F +     TASVM++ +   
Sbjct: 152 RAVEAKRLRAAREVVLARTIETIDVVNQARVHIAEPQPSPFVREQVHGTASVMLKLMTGR 211

Query: 184 VYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQAIQHE 240
                  +AI++LVAA+VP +    V+V+D  G LL+A +  + +I  + L + Q ++  
Sbjct: 212 NLSNAQVQAIQNLVAASVPGMAPEAVSVVDQAGHLLSATSNADNDINDRQLRLQQTVEAR 271

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               +NK L   LG +N+ + V  +L+    Q     Y P     RS   S +       
Sbjct: 272 YMDALNKLLVPLLGENNYTAEVHTDLDFTESQATRESY-PKEGSLRSESGSWNKDGGPD- 329

Query: 301 QPESAVTVEQNMPHVSDRKV---------------------------------------- 320
           Q         NMP                                               
Sbjct: 330 QNGGIPGAMSNMPPTPANPTQNPPPNLQPPAQPNNQQNAQNGQQGQNAQGQPNGQNAQQG 389

Query: 321 ---------PLPRSLENTDKKEEQSN--YEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369
                    P   + +   +  E  N  YE+  +     +    ++R+S+A+ + +    
Sbjct: 390 QNARAPGSVPAETAQQAQARTSENFNRYYELGREVSVIRNPTGSVKRVSVAIALRQINHG 449

Query: 370 EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFM 429
                   +      +A++ K++  A G ++ RGD + I+S DF+   +F+    Q S++
Sbjct: 450 --------KPPSPEQVAQLEKLIKGAIGFDASRGDVVAISSSDFMGGSVFSMPWYQNSWV 501

Query: 430 DILSRHFATVINALVFLVGT 449
            +L+R+ + ++ A + + G 
Sbjct: 502 PLLARNLSALLVAALVIFGF 521


>gi|126462456|ref|YP_001043570.1| flagellar M-ring protein FliF [Rhodobacter sphaeroides ATCC 17029]
 gi|126104120|gb|ABN76798.1| flagellar M-ring protein FliF [Rhodobacter sphaeroides ATCC 17029]
          Length = 570

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 121/572 (21%), Positives = 227/572 (39%), Gaps = 43/572 (7%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            +LDQ+ +F          R  + A +IL   +L +A    +  P    LY  L  ++  
Sbjct: 23  GMLDQIRRF----GDQPGLRRAMPAILILAVTVLALAGWILLREPARVTLYPGLPEAEKA 78

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           R+  +L+   I   I +    ++VP +   +AR+ LAAQGLP    +    L D     G
Sbjct: 79  RVIDSLTGGGIAAVIDERTGEVAVPGADYHRARMLLAAQGLPQGLPDGNALLSDL--PMG 136

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
            +  ++     +A E ++AR+I  IS + AARVH+ +P+  +F +    P ASV ++ + 
Sbjct: 137 TSKSVETARLRQAQELDLARSITEISAVSAARVHLALPERSAFLRESQPPRASVFLQIVP 196

Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAI 237
                    EAI +LV+++VP +   DVTV+D  G+LL+    +    +  + L     +
Sbjct: 197 GRTLDGAQVEAIVNLVSSSVPGMARQDVTVVDQMGRLLSRGSDDPAVLLNDRQLQHRVQL 256

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           +      I   L    G  N    V  +++   Q+IRE   DPD     + +   +   +
Sbjct: 257 ETLYRNRIESLLTPIAGPGNLAVQVTIDMDFTRQEIREEQVDPDRTALLAEQSQIEE--T 314

Query: 298 ETSQPESAVTVEQNMP--------HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
              Q         N P                   +   +  +    N+E++ K   T  
Sbjct: 315 ADPQARGIPGAVSNSPPPEAALEAGAPPTAAGEAATPMRSRSQNSTRNFEVSRKIETTLP 374

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL--AEINKIVSAATGINSRRGDTIT 407
              ++ R+S AVVV           +A    +      A++ ++  +A G ++ RGD +T
Sbjct: 375 ATARVARVSAAVVVRAQPQPAATDPAAPPPPLLPEALKADLERLTRSAVGFDADRGDVVT 434

Query: 408 ITSMDFLENQLFNS-GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
           IT+  FL+  +  + G     ++  L+R    +    V          + L  +R + N 
Sbjct: 435 ITAQPFLDTVVPEASGWSAEPWLADLARQGFLLAALAV----------VALGVVRPILNR 484

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI--NSYVS 524
                         +         T +   +  +LD     + +    L   +   +   
Sbjct: 485 VL--------LPAPAAAGALPLGETAVEVGEGESLDDVRARLKARQGALTKNMLDAARSH 536

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIED 556
           ++  L +  ++E +E R A  +R+   +E++ 
Sbjct: 537 EEQILVIRKLVEEDEGRIATTIRQMIAAELDT 568


>gi|157364749|ref|YP_001471516.1| flagellar M-ring protein FliF [Thermotoga lettingae TMO]
 gi|157315353|gb|ABV34452.1| flagellar M-ring protein FliF [Thermotoga lettingae TMO]
          Length = 536

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 106/563 (18%), Positives = 222/563 (39%), Gaps = 47/563 (8%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            I + L  F++    L R   ++ + + +  I++ +    FV +P Y  L   L      
Sbjct: 6   KIQEYLKGFYEKWKGLPRGNKILFSGIAVSIIIVGILTIIFVAAPRYTLLVSGLTDEQSG 65

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            +   L    +++++   G  +      V + R+ LA+ G+   ++  G+E+ D+  SFG
Sbjct: 66  YLIQQLETMGVEYKVEP-GRVLVSDKYNVYELRMRLASMGV-LGATTKGFEILDQ-QSFG 122

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK-IGARPTASVMIRAI 180
            TSF +++    AL+GE+ R+I +ISG+ +ARVH+ +P    + +   A P ASV++   
Sbjct: 123 ATSFDKQVRYQVALQGELERSIMTISGVRSARVHLTLPKYTYYVRGEMAEPKASVLVVLQ 182

Query: 181 NPSVYK--SAEAI-RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIV 234
                     + I   LVA AV  + + +V V+D   ++L+          +      + 
Sbjct: 183 PGQDLSQNQIKGIMVELVAGAVEGMKLENVKVIDQMSRVLSDKVTASQDMLLASNRAELK 242

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
            +++   +  I + L +  G          +LN +  + +   Y+P ++    +R  +  
Sbjct: 243 MSLESYYQKKIKQTLESVFGPSRVEVIPDIKLNWERVERQLTKYEPATRQGGIVRSQEQE 302

Query: 295 QRSETSQP--ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD-N 351
                + P    AV  + N+P           S    ++    +NYE+NT       +  
Sbjct: 303 SEKSANLPATGGAVGTDSNIPPTYPTTTSQGTST--YERSHTITNYELNTVVENVVQNKE 360

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
            +++ LS++V+++    +  + ++ D+ + + +   ++ +V    G NS   D     S+
Sbjct: 361 GEIDTLSLSVIID---ASSSVFQNFDEAERERWANIVSDLVEKGIGANSS--DPNLAVSV 415

Query: 412 DFLENQLFNSGTVQVSFMDI-LSRHFATVINALVFLVGT-LLVTFLGLHALRRLHNIDDA 469
            FL          Q S  +I   R F  ++  +  L     ++ +L +   RR+ +    
Sbjct: 416 AFLPFDRTFEEEYQKSLSEIERKRRFTMMVTGVSLLFALGFMLFYLMIIQFRRIRSRRLI 475

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
           +  E   K       +        +  +  AL    ++                      
Sbjct: 476 E--ERKLKMEEELKKVFEEEEEVPLTPEQQALLELKEN---------------------- 511

Query: 530 RLLHMIEINEERFAKILRKWARS 552
            L  +   + E  A I++ W   
Sbjct: 512 -LEKIYRESPEEVANIIKLWLVE 533


>gi|146296280|ref|YP_001180051.1| flagellar M-ring protein FliF [Caldicellulosiruptor saccharolyticus
           DSM 8903]
 gi|145409856|gb|ABP66860.1| flagellar M-ring protein FliF [Caldicellulosiruptor saccharolyticus
           DSM 8903]
          Length = 562

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 126/585 (21%), Positives = 239/585 (40%), Gaps = 63/585 (10%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           D L +  +    L +++ ++L     + I+  + A +    PHY  L+  L+  D  +I 
Sbjct: 7   DFLKRIKERLDKLSKSQKIMLIVSSSIIILSVIIALYVTTRPHYVVLFSGLDPKDAAQIQ 66

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L E  ID ++++ G++I V  + + KA++  A  G P SS  +  +     +S   T 
Sbjct: 67  QTLLEQKIDSKVTNGGTTILVKDTDIDKAKMVAALSGYPKSSEITFEDALKLSSSMTATE 126

Query: 125 FMQEITRVRALEGEIARTIQSI-SGIVAARVHIVMPDMGSFR--KIGARPTASVMIRAIN 181
             +  T ++  E EI R ++ +   I  A V++ +P+  +F       +PTASV +    
Sbjct: 127 SDKRRTFIKLKESEIQRALKEMTDYIDDAVVNLSVPEDYTFALKDETTKPTASVKLTLKK 186

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQH 239
                  E I+  VAA+V  L   +V ++D+ G  L+ N  +    I  K L I  A ++
Sbjct: 187 SLSSDQIEGIQRFVAASVEGLLPENVVIIDNKGNYLSDNSFDSSEGISSKQLQIKIATKN 246

Query: 240 EIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQ 295
           EIE  + + L  ++   ++ + +V  ++N D Q++ E  Y P   D  +  S + +K+  
Sbjct: 247 EIERKVKELLGNYVSSPEDVKVSVNLDMNFDMQKVSETKYSPVLEDGGIVVSRKTTKEEA 306

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVP--LPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
           +S  +        + N P  ++ + P        +  K +E  NY+ N K I T      
Sbjct: 307 QSTNAGANGIPGTDTN-PTQNNPQYPLSSQGGQSSYSKTDETVNYQNNEKKIETIKAPGT 365

Query: 354 L--ERLSIAVVV---------NKGRLTEVLGRSADQGKI------------DSYLAEINK 390
           +  ++ SIAVV+         +  +  +    S D+ K+               +  I  
Sbjct: 366 INYDKSSIAVVLYRYVTYRQEDYEKSNQAKTMSWDEFKLQNQNNKRSFLTDQKEVENIVN 425

Query: 391 IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL 450
           +V +ATGI       +T+             G    +F+D   R     ++ +      L
Sbjct: 426 LVKSATGI-----QNVTV------------EGYEIPTFVDKPQRQIP--LDYIYVAFAFL 466

Query: 451 LVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFS 510
           L+    +  L +   +  AK+ E+ G   +S P     V   L        +   ++I  
Sbjct: 467 LLMAFAISLLIKSLKVKPAKQVELAGVGGVSIPSEQEKVEEILQEAQKKKEEQPIEEI-- 524

Query: 511 HSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
                   I  +   Q + ++  ++    E  A++LR W   + E
Sbjct: 525 -------NIEEFGVSQYEKQIDKLLREKPEVVAQLLRNWLNEDWE 562


>gi|84514816|ref|ZP_01002179.1| Flagellar FliF M-ring protein [Loktanella vestfoldensis SKA53]
 gi|84510975|gb|EAQ07429.1| Flagellar FliF M-ring protein [Loktanella vestfoldensis SKA53]
          Length = 616

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 111/576 (19%), Positives = 223/576 (38%), Gaps = 51/576 (8%)

Query: 26  ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISV 85
                + ++L +     + +P    L+  L  ++   +  AL     D +I      I+V
Sbjct: 43  VIAAALLVVLGLILYLILQAPQRTTLFAALPEAEKAAVMDALRNNGTDVQIDPVTGDITV 102

Query: 86  PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145
           P+     +R+ LAAQGLP S  + GY +       G +  ++ +   ++ E E+AR+I  
Sbjct: 103 PTGEFYNSRMSLAAQGLPQSMPD-GYSVL-TDMPMGTSRSVESMRLKQSQEVELARSINE 160

Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLD 203
           I  + A+RVH+ +P+  +F +    PTASV ++ +       +   AI +LV+++V NL 
Sbjct: 161 IDVVSASRVHLAIPERSAFARNAQNPTASVFVQVMPGRSLSEQQVMAIVNLVSSSVANLP 220

Query: 204 MGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSA 261
              VTV++  G+LL+   N+   ++  + L     +++     I   L   +G  N  + 
Sbjct: 221 KTSVTVVNQNGQLLSDTVNDPATDLADRQLEYQLRLENIYRTRIESLLTPIVGPGNVSAQ 280

Query: 262 VVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ--PESAVTVEQNMPHVSDRK 319
           V  +++    +  E +  PD     S +++ + + +E SQ  P +        P +    
Sbjct: 281 VSLDIDFTRTERTEDMVIPDQSALLSEQVAVEEEVAEASQGIPGTVGNTPPPRPELEQPA 340

Query: 320 VP-------------------------------LPRSLENTDKKEEQSNYEINTKSIATT 348
                                             P             NYE++    +  
Sbjct: 341 GAADGQAPAEAGATAEAGANTVAEIYAPVDRNTGPGQPRLRSSDSTMRNYEVSRTVTSEN 400

Query: 349 HDNYKLERLSIAVV------VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402
               ++  + +AV+      V      + +   A  G   S L E+  +VS   GI+  R
Sbjct: 401 SPMTRINGVHVAVLLRETLPVAPTEDGDAVAAPAI-GLDPSRLDEVKSLVSRTVGIDESR 459

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           GDT+ ++S+ F+  +   S     + +      +   +     +V  L V  LGL  ++ 
Sbjct: 460 GDTLIVSSLPFISPEAVISSLSGSTELVWHEDPWIREMMRNALMVIVLAVVTLGL--IKP 517

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS--RIN 520
           L     A  GE GG   +        +   ++  +        +      ++  S   ++
Sbjct: 518 LLTQFLASSGESGGYGNVITTEDGEIIDMDVIEMEEGQTLEEIKAKLKPKKSTISAEMLD 577

Query: 521 SYVSKQSDLRLLHMIEINE-ERFAKILRKWARSEIE 555
           +  S    + L+ MI  +E  R + + +     +++
Sbjct: 578 TANSYDDKVALIRMIVADEAGRVSNVFKALMEDDLD 613


>gi|220917658|ref|YP_002492962.1| flagellar M-ring protein FliF [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955512|gb|ACL65896.1| flagellar M-ring protein FliF [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 533

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 124/553 (22%), Positives = 223/553 (40%), Gaps = 39/553 (7%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +L QL +  +   +L     L+L +  LV I +   +    +   Y   +  L   D   
Sbjct: 4   LLKQLRELPRLLGALPAGLKLVLVAGALVAIGVAALSAVRSSE-AYQYAFTNLTPEDSAE 62

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
            + AL  A + +R+   GS+++VP+S V  AR+ LA  GLP      G+E+FD+    G+
Sbjct: 63  AAGALGAAGVPYRLEAGGSALAVPASRVYDARLLLAGAGLPRGGG-VGFEIFDR-GDLGV 120

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           + F Q++   RA EGE+ARTI  ++ + +ARVH+ +P+ G +R       A+V++     
Sbjct: 121 SEFTQKVNLRRATEGELARTISRLAQVRSARVHLTLPEKGLYRDQDRPAAAAVVVNLQPG 180

Query: 183 SVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240
                     IRHLV++AV  L    V+V+D  G++L+    +   LG+++   + ++ +
Sbjct: 181 RTLDQREISGIRHLVSSAVAGLAPAGVSVVDGRGEVLS----DEGPLGEAMGYQRRMERD 236

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           +E  I   L   +G     + V A L+    Q    V DPDS   RS R       S+ +
Sbjct: 237 LERRIVDLLGQAVGPGAVVARVTASLDQTEVQSSAQVLDPDSATLRSERKLTQQSSSDGA 296

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
            P        N P          R   +   +++  NY+++T +  +     +LER+S+A
Sbjct: 297 GPAGVAGAAANQPLAPPAPAAGARGRSSASTEDQTRNYDVSTTTTTSVARVPRLERISVA 356

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           V+V+          +A   + D+ +A + ++   A G ++ RGDT  I+S  F+  +   
Sbjct: 357 VLVDG---------AAGAPRADAEIARLGELAKRAVGFDADRGDTFEISSSPFVRAEEPA 407

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
                     +L R                                       +  +   
Sbjct: 408 PPPAPP--PALLER-----------------PAVRWGALGAGALVGLALLAAALRRRRAP 448

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
           + P +        +     AL  +       +   +    +  S     R   +   +  
Sbjct: 449 AAPEVLPIRPGARVAEIEAAL--ARDAALPGAPPPRPAALADPSATLRDRARDLASQDPT 506

Query: 541 RFAKILRKWARSE 553
           R A +L+ W   E
Sbjct: 507 RTAHLLKAWIAQE 519


>gi|326386946|ref|ZP_08208560.1| flagellar M-ring protein FliF [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208626|gb|EGD59429.1| flagellar M-ring protein FliF [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 561

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 106/541 (19%), Positives = 202/541 (37%), Gaps = 51/541 (9%)

Query: 28  VILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPS 87
             +  + +       +       LY  L  S+  +++ AL +A I + I++   +++V  
Sbjct: 49  AGVAAVGMAGLLWLEMAPAPQRVLYTDLNDSERAQVTAALDKAAIRYTINNQTGAVTVGE 108

Query: 88  SMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSIS 147
             + KAR+  AA G   ++  +G ++ DK+   G +  ++      A E E+  TI  I 
Sbjct: 109 DDLYKARMVAAADG-ALATPETGEQMIDKL-PMGASRTVEGQRLQAARERELELTIMQIE 166

Query: 148 GIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMG 205
           G+ A RVH+  P+   F +  A  TASVM++             AI +LVA +V  L + 
Sbjct: 167 GVEAVRVHLAEPEKSVFVRDNAPATASVMVKLAKGRQLSDSQVTAIVNLVAGSVAGLSVD 226

Query: 206 DVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE 265
            V V+D  G LL++     +     + +   ++ ++   +   L   LG  NF S +  +
Sbjct: 227 AVKVIDQQGHLLSSGRPGDD---DRIEMQARLEDKLRQQVETLLTPMLGTGNFSSEIQVD 283

Query: 266 LNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN-----------MPH 314
           L+MD Q      YD    V    + +     +    P     V  N            P 
Sbjct: 284 LDMDQQTSARESYDKQGVVRSETQTASQT--TGNGAPVGVPGVLSNTPPPQTQPSPGAPT 341

Query: 315 VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR 374
            +      P     +       NYE+  +   T     K+ RLS+AV ++   + +    
Sbjct: 342 ANTTPASPPAPSPTSSDTSSTRNYELGREVAVTNASPGKVRRLSVAVALSGAAMAKAK-- 399

Query: 375 SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSR 434
                     + +I ++VSAA G +  RGD +T+   +F    +      +  +  ++ R
Sbjct: 400 -------PGEIDQIKQLVSAAVGADPTRGDQVTVVVRNFQPTTVEQPKFWETPWFAMMVR 452

Query: 435 HFATVINALVFLVGTLLVTFLGLHALRR---LHNIDDAKKGEVGGKSILSPPPISSAVTT 491
           +   ++  L+ L+  +      L    R       D+++  E        P P    +  
Sbjct: 453 NGVALLAVLLTLLLGVRPLIKALRRDHRGAAKIESDESEDSETAEAEDSEPEPDRPELIP 512

Query: 492 GLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWAR 551
              P+  +     + ++      L  R               ++    E    +LR+  +
Sbjct: 513 AQNPDTGVV----DPELLGRQVGLAQR---------------LVRERPETAVAVLRQMLK 553

Query: 552 S 552
            
Sbjct: 554 D 554


>gi|226225737|ref|YP_002759843.1| flagellar M-ring protein [Gemmatimonas aurantiaca T-27]
 gi|226088928|dbj|BAH37373.1| flagellar M-ring protein [Gemmatimonas aurantiaca T-27]
          Length = 540

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 120/574 (20%), Positives = 222/574 (38%), Gaps = 59/574 (10%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++ LL+       LG  R  ++ +V +V   L      +   P    LY  + V  V  +
Sbjct: 1   MNSLLESLTGR--LGGARQAMIIAVGVVVTALVFGVSRWATKPTMVPLYADVPVEQVKAM 58

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  L+EA I + +   GS+I V S+ + +AR+ LAA  +P+S    G ELFDK  ++G+T
Sbjct: 59  TDKLTEAGITYELDRTGSTIMVQSADLARARVDLAAGTVPNSGRP-GLELFDK-PTWGMT 116

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
            F Q++   RALEGE+ RTI  +  + + +VH+ + D   F++      ASV +   N  
Sbjct: 117 DFTQKVNYRRALEGELERTISKMKDVKSVKVHLAIEDDQLFKQNERPSKASVTLAMNNSI 176

Query: 184 VY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQAIQH 239
               ++   I  LVA++V  L+   VT++D  G+ LT  +      +  + LS+ +  + 
Sbjct: 177 APRAEAVRGIASLVASSVGGLEPEHVTIVDERGEALTMEDDGSMAGLTSRQLSVQREAES 236

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
            +E   +K L++ +G  N R  V A +N D  +      DPD +   + + ++    +  
Sbjct: 237 YLEQKADKLLSSLVGSGNARVQVSASMNFDKVERTVQAVDPDRQAIATEQKAEVTPSNPQ 296

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
                + T                            ++YE        T     +++L++
Sbjct: 297 QGAGYSTTA---------------------------TSYENTRSVENFTGAVGNIKKLTV 329

Query: 360 AVVVNK------------------GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR 401
           AV+V                                + +    L  I  +V  A G++S 
Sbjct: 330 AVLVADRVVLPPAAPVPADSAAAAAAAALPPVAPTIETRTPDELTRIEALVRNALGVDST 389

Query: 402 RGDTITITSMDFLENQLFNSGTVQVSF-MDILSRHFATVINALVFLVGTLLVTFLGLHAL 460
           RGD I++ S  F       +         D+L R  +     +      +L+    L  +
Sbjct: 390 RGDMISVVSAPFDMPAPVVAVKETNPVPTDLLGRIQSNPKPVVAIAALVVLLI---LALV 446

Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520
             +      ++ E       +P       +T +       LD    D  +     + +I 
Sbjct: 447 TVVLLRPKKQQIEAPAVLPAAPAYAELPASTQMQQAMQEMLDEEPMDQMALIEEQRRQIV 506

Query: 521 SYVSKQSDLRLLHM--IEINEERFAKILRKWARS 552
                 +  R   M  ++   +   +++R W R 
Sbjct: 507 LPPPPTTPEREQAMATVDQRPDAALRVVRNWLRQ 540


>gi|289805827|ref|ZP_06536456.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 410

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 92/433 (21%), Positives = 170/433 (39%), Gaps = 50/433 (11%)

Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDV 207
            +ARVH+ MP    F +    P+ASV +              A+ HLV++AV  L  G+V
Sbjct: 1   KSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNV 60

Query: 208 TVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAEL 266
           T++D +G LLT +N   R++    L     ++  I+  I   L+  +G  N  + V A+L
Sbjct: 61  TLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQL 120

Query: 267 NMDTQQIREIVYDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP---------- 313
           +   ++  E  Y P+    ++   S+    SE      P        N P          
Sbjct: 121 DFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIAT 180

Query: 314 ----HVSDRKVPLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
                 + +  P   +  N++        + E SNYE++     T  +   +ERLS+AVV
Sbjct: 181 PPTNQQNAQNTPQTSTSTNSNNAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVV 240

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           VN   L +              + +I  +   A G + +RGDT+ + +  F      ++ 
Sbjct: 241 VNYKTLADGKPL----PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDNT 293

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482
             ++ F    S     ++ A  +L+  ++   L   A+         ++ +   +     
Sbjct: 294 GGELPFWQQQS-FIDQLLAAGRWLLVLVVAWILWRKAVHPQLTRR-VEEAKAAQEQAQVR 351

Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542
                AV   L  ++ +    +NQ           R+ + V  Q   R+  M + +    
Sbjct: 352 QETEEAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVV 397

Query: 543 AKILRKWARSEIE 555
           A ++R+W  ++ E
Sbjct: 398 ALVIRQWMSNDHE 410


>gi|302872571|ref|YP_003841207.1| flagellar M-ring protein FliF [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302575430|gb|ADL43221.1| flagellar M-ring protein FliF [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 560

 Score =  279 bits (714), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 120/586 (20%), Positives = 230/586 (39%), Gaps = 67/586 (11%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           D L    +   +  +++ ++      + ++  +AA +    PHY  ++  L+  +   I 
Sbjct: 7   DFLKNIREKWANFSKSQKIMFIISSSIILLSVIAAIYITTRPHYVTIFSGLDPKEAAEIQ 66

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             LSE  ID + ++ G++I V  + V +A++  A  G P +SS +  +     +S   T 
Sbjct: 67  NILSEQKIDSKAANGGTTILVRDTDVDRAKMAAAQAGYPKNSSITFEDALKLSSSMTATE 126

Query: 125 FMQEITRVRALEGEIARTIQSI-SGIVAARVHIVMPDMGSFR--KIGARPTASVMIRAIN 181
             +  T ++  E EI   ++ +   I  A V++ +P+  +F       +PTASV +    
Sbjct: 127 SDKRRTFIKLKESEIQEALKQMSDYIEDAVVNLSIPEDYTFALKDEATKPTASVKLTLKK 186

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQAIQH 239
                  E I+  VAA+V  L   +V ++D+ G  L+ N  +    +  K L I  A ++
Sbjct: 187 SLGSDQIEGIQRFVAASVEGLLPENVVIIDNKGNYLSDNSSDTTEGLSSKQLQIKVATKN 246

Query: 240 EIEMNINKALAAFLG-VDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQ 295
           EIE  + + L  ++   ++ + +V  ++N D Q+I E  Y P   DS +  S + +K+  
Sbjct: 247 EIEKKVKELLGNYVNSPEDVKVSVNLDMNFDMQKISETKYSPVLEDSGIVVSKKTTKEEA 306

Query: 296 RSETSQPESAVTVEQNMPHVSDR-KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
           +S  S        + N    + +  +          K +E  NY+ N K I T      +
Sbjct: 307 QSTNSSSSGVPGTDTNPTQNTTQYPITSQGGQSTYTKSDETVNYQNNEKKIETIKAPGTI 366

Query: 355 --ERLSIAVVV-NKGRLTEVLGRSADQGK--------------------IDSYLAEINKI 391
             ++ SIAVV+      T+     +DQ K                        +  I  +
Sbjct: 367 NYDKSSIAVVLYRYITYTQEDFEKSDQAKNMTWAQFKLQNQNNKRPFLTDQKEIETIVNL 426

Query: 392 VSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA--TVINALVFLVGT 449
           + +ATGI       +T+             G    +F+D   R      +  AL FL+  
Sbjct: 427 IKSATGI-----QNVTV------------EGYEVPTFVDRPQRQIPVDYIYVALAFLLLM 469

Query: 450 LLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF 509
           +    L + A R        +   VG   I    P++  +                 +  
Sbjct: 470 VFAISLLIKASR--GKSRTVELAGVGPVEISEEKPVAEGILQ-------------EAEKR 514

Query: 510 SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
             +   +  +  +   Q + ++  ++    E  A++LR W   + E
Sbjct: 515 KEAEVEEINVEEFGVNQYEKQIDKLLREKPEIVAQLLRNWLNEDWE 560


>gi|256370955|ref|YP_003108779.1| flagellar M-ring protein FliF [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256007539|gb|ACU53106.1| flagellar M-ring protein FliF [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 513

 Score =  279 bits (714), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 119/550 (21%), Positives = 223/550 (40%), Gaps = 59/550 (10%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L+ F SG + G+  ++++   ++V I + +A+    +SP Y  L+  L   D   I+  L
Sbjct: 14  LRRFASGFTTGQKAVVMVGIALVVAIAVALASL--TSSPSYGVLFSGLSAQDAGSITAKL 71

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM- 126
             A + + +++ G+++ VP ++V + R+ LA  GLPS ++         +N   +TS   
Sbjct: 72  QSAGVPYELTNGGTTVLVPQNLVDQERVSLAEAGLPSQTAG-----LTSLNGLSITSSQI 126

Query: 127 -QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRAINP-- 182
            Q+     AL+ ++A+TI++I+G+ +A+V++ +P   +F     ++P+ASV++       
Sbjct: 127 TQQADYQAALQSQLAQTIEAINGVQSAQVNLALPPTDAFAIGQSSQPSASVIVTLDAGVS 186

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242
              +  EAI HLVA+A+P ++  DVTV D  G +L A  +  N  G   S  Q    ++E
Sbjct: 187 LTSQQVEAIVHLVASAIPGMNANDVTVADQNGDVLAAPGLGVNAQGAGQS-AQGFDSQLE 245

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
            +I   L   +G  N    V A L+ +    +            +       Q    +  
Sbjct: 246 ASIQSMLDTIVGPGNANVRVAATLSTNQVTTKTQSIQTQKGKPLTTPTQTQTQTQTFTGN 305

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
            +          ++         +    +    + Y I   +         ++RLS+AV 
Sbjct: 306 GTVPGGTLGTTGIAT----TGNQVSTYKQTSSTTQYAIGQVTQTVQQAPGAIQRLSVAVA 361

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           VN                    LA++ ++V+AA GI   RGDT+++ ++ F       SG
Sbjct: 362 VNSHVKGLS-------------LAKLRQVVAAAAGIVPARGDTLSVVAVPFPALATTPSG 408

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482
                F  IL      +   ++ ++G L    L   A  R                    
Sbjct: 409 AGSSLFGSIL-----GIAKVVLLVLGALGAILLMSRAAAR-----------------TEV 446

Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542
            P+  A     +      L    +++ + +      +           +L  I+   E  
Sbjct: 447 EPLFPAELEPALAGTGGQLAGPTEELPAVALPQSQPVVGED-------VLDYIDRQPEDV 499

Query: 543 AKILRKWARS 552
           AK+LR W  +
Sbjct: 500 AKLLRVWMTA 509


>gi|220913732|ref|YP_002489041.1| flagellar M-ring protein FliF [Arthrobacter chlorophenolicus A6]
 gi|219860610|gb|ACL40952.1| flagellar M-ring protein FliF [Arthrobacter chlorophenolicus A6]
          Length = 532

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 121/555 (21%), Positives = 212/555 (38%), Gaps = 46/555 (8%)

Query: 6   QLLQFFKSGTSLGR-----TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           Q+  FF    S  +      R L +  V  V ++  +A   ++  P Y  L+  L+ +D 
Sbjct: 4   QITAFFTRMGSGIKGFSAAQRTLAIIGV-AVLVLGTVALTSWLAKPAYTPLFSGLKDTDA 62

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           N I   L + N+ + I++ GS+I VP   V   R+  AA     S++ +GY L DK+   
Sbjct: 63  NGIVEQLRKDNVPYEIANGGSTILVPEEKVYDERLK-AAAAGLPSAAATGYSLLDKL-GV 120

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
             + F Q +T  RALEGE+A TIQ++ G+ AA V + +P+   F       TASV +   
Sbjct: 121 TSSEFQQSVTYKRALEGELATTIQAMEGVKAAAVRLAIPEKSVFVDKTPDATASVFVETQ 180

Query: 181 NPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQ 238
             +       +A+ HL +AA+ NL   +V+V+DS G +L+   +     G S       Q
Sbjct: 181 PGTTLSPDKVQAVVHLTSAAIENLKPANVSVVDSQGNVLST--VGGGAAGSSSKQAGEYQ 238

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
                ++   L + +G  N   AV A++  ++ Q R   +   + V      +K    + 
Sbjct: 239 ERTTDSVKAVLDSVVGPGNATVAVAADVTGESAQQRSETFTAAADVPALSESTKSETYTG 298

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
           T    + V    N+                 D  +   N  +N  +         ++R +
Sbjct: 299 TGGGAAGVLGPDNI-----AVPGGTNGNSTFDSTDSTKNNAVNKVTEDRIIPQGAVKRQT 353

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           I+V +N+     V             LA +  +V++A G +  RGD +T+  + F     
Sbjct: 354 ISVAINQAAAAGVN------------LASVRSLVTSAAGADPARGDVVTVEVLPFSTAAA 401

Query: 419 FNSGTVQVSFMDILS-----RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
            N+                     T++ A   L+  L +  + L + RR    +    G 
Sbjct: 402 DNAAASLAEAKAEAEAAQQGELMKTLVIAGSILLAALALIVVALISWRRRQRREPVDLGI 461

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
                +     +  A  T  +                     +++I +            
Sbjct: 462 GIEYPVAPVTALEPAPATSAIQLPLAEPLPLPGADVLDGERRRAQIEA------------ 509

Query: 534 MIEINEERFAKILRK 548
           M+  +  R A  LR 
Sbjct: 510 MVAESPARTADYLRG 524


>gi|328958284|ref|YP_004375670.1| flagellar M-ring protein [Carnobacterium sp. 17-4]
 gi|328674608|gb|AEB30654.1| flagellar M-ring protein [Carnobacterium sp. 17-4]
          Length = 524

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 107/568 (18%), Positives = 232/568 (40%), Gaps = 62/568 (10%)

Query: 4   LDQLLQFF----KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           +D + + +        +LG+++ + L  V++  + +  +  ++     Y  L+  LE +D
Sbjct: 1   MDGMKKIWTGIKDGWKNLGKSKQIGLVFVLIFVVSIVTSLTYYTQKVEYATLFSDLEEAD 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I   +    I +++ D+G++I +  + V   RI LA   +   S+ +G+E+FD+  S
Sbjct: 61  AGTIVNDIKTKGIKYKLEDDGTTILIDQAQVDTYRIELAVNDMLPKST-TGFEIFDET-S 118

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI--GARPTASVMI 177
              T   ++I   RA+ GE+ R+I ++  I  A+V + +P+   F      ++ +AS+++
Sbjct: 119 MMATDEDRKIMYQRAVTGELERSISALDSIEQAKVMLSLPEDSVFTSEENQSQASASIVL 178

Query: 178 RAINPSV--YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT------ANEMERNILGK 229
             I+ S     + + I  LV+ AV NL   ++ ++D+ G LL+       N    +++ K
Sbjct: 179 TPISGSQIPMSAVQGIASLVSGAVDNLPKENIKIVDTAGNLLSTALEDEGNLNATDLVSK 238

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
             +I ++ + E+E  + + L    G+D    AV A++N D+ +   I Y      + S+R
Sbjct: 239 YQAITKSYEQELEQKLLQTLGPIYGMDKMTVAVNAKMNFDSNESEIINYG-----DSSVR 293

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
               +    T   E     E ++  +   +     +          +NYE+N+++  T  
Sbjct: 294 SEAVSAGGGTIDVEEGEGFENSINQIQSGEEGGNSTYN------RTTNYELNSETTNTIK 347

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
              ++E+LS +V+ +                  +    +  IV+   G    R DTI+I 
Sbjct: 348 APGEVEKLSASVIFDGN-------------LNPADQESLEAIVATTIGSVEER-DTISIQ 393

Query: 410 SMDF----LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465
            +DF              ++ S  D L R++  ++  L  L                +  
Sbjct: 394 GIDFATTTDATDTTAPEQLKSSIRDTLVRYWPYLVGGLAIL----------------VIL 437

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
           I   +                      ++        +  +       +L+ ++N  +S+
Sbjct: 438 IVLLRLLRKRNDDDDELDFFDEEEPEPIIEPVRPVRPTDEERKAKEQADLKRQLNKNMSE 497

Query: 526 QSDLRLLHMIEINEERFAKILRKWARSE 553
           +    +    + + E  A +++ W + E
Sbjct: 498 KEST-VRDYAKESPEGAADLIKIWMKDE 524


>gi|160902819|ref|YP_001568400.1| flagellar M-ring protein FliF [Petrotoga mobilis SJ95]
 gi|160360463|gb|ABX32077.1| flagellar M-ring protein FliF [Petrotoga mobilis SJ95]
          Length = 516

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 100/559 (17%), Positives = 217/559 (38%), Gaps = 60/559 (10%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           + Q+  ++K+     +   ++L   ++  I+ F      ++  +Y+     L+ ++   I
Sbjct: 5   MQQIRDWWKNLEDRKKRNYIVLLITVVALIVFF---SILLSRKNYEFFIGGLDQANAGNI 61

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L E  I++++ D G+ I V +  V + R+ LA++G     +  GYEL  +   FG T
Sbjct: 62  VTKLEEMGIEYKVDDFGN-IYVANQNVSELRMKLASEG-SLGYNLQGYELL-QNQGFGAT 118

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINP 182
           S+ +++    ALEGE++R+I S+  + +ARVH+V+P    +      +P+ASV++     
Sbjct: 119 SYDKQVNYQIALEGELSRSIASMDSVQSARVHLVIPPRTYYQVGESPKPSASVLLVLNPG 178

Query: 183 S--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAI 237
           +       + I +LVA AV  L   ++ V+D+    L+A      +         +   I
Sbjct: 179 ASVTSSQIKGIINLVAGAVAGLQPENIKVVDNFSNDLSAQIALGEDIGSADTKFKLKAEI 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDA 294
           +   +  +   L +  G+ N       ELN    +  + + +P   ++ +  S +   + 
Sbjct: 239 ERYYKEKVESGLQSVFGLGNVVVVPEIELNWQKIEEEQRMVEPVVDENGIILSQQTKTE- 297

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTK-SIATTHDNYK 353
           Q S +        V+ N+P  + +      +       +  +NY++N   +      N +
Sbjct: 298 QSSSSPNSGGVPGVDSNIPPYTYQTP--TSTGNYYSSSDVITNYDVNEIYTRTIEDKNGE 355

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           +   SI + ++         +++  G      ++I   V+ A G      D I++  + F
Sbjct: 356 ISNKSITIFID--------FQNSKVGDSQELRSQIKTAVATAIGTPE---DNISLVDIQF 404

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL-HALRRLHNIDDAKKG 472
             +       ++        R    VI  +V     +LV  +     +R+   + + +K 
Sbjct: 405 NRDLEAMRADIEYQLQLRRQRITNIVIAIIVIAFVMMLVILIARARRVRKASQLVEERKR 464

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
           E+  +   +       V       +                                 + 
Sbjct: 465 ELESRVEEAMKERGVEVEEVSPEQERF-----------------------------REIA 495

Query: 533 HMIEINEERFAKILRKWAR 551
            + E N +  A I++ W +
Sbjct: 496 TLAENNPDEVADIIKSWLK 514


>gi|218681104|ref|ZP_03529001.1| flagellar MS-ring protein [Rhizobium etli CIAT 894]
          Length = 282

 Score =  276 bits (705), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 168/273 (61%), Positives = 215/273 (78%), Gaps = 2/273 (0%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           +IL  V  V I + +AA  FVN P  + LYV L+  D+N+IS+AL+EANI+F++  +GSS
Sbjct: 1   MILGGVGAVSIAIVLAAALFVNKPAQETLYVGLDQPDLNQISMALAEANINFQVGTDGSS 60

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           ISVP+ M GKAR+ LA +GLP +S+N+GYELFD V S GLTSFMQE+TRVRALEGEIART
Sbjct: 61  ISVPAGMTGKARLMLAERGLP-NSANAGYELFDNVGSLGLTSFMQEVTRVRALEGEIART 119

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNL 202
           IQSISGI AARVHIVMP++G+FRK   +PTASVMIRA   +   +A +IRHLVA+AVP L
Sbjct: 120 IQSISGITAARVHIVMPEVGNFRKQEQKPTASVMIRASAVTGRSAATSIRHLVASAVPGL 179

Query: 203 DMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSA 261
           D+ DVT+LDS G+LL + ++   + L +SL IVQ +Q E+E NI+KALA FLG+DNFRS+
Sbjct: 180 DVDDVTILDSAGQLLASGDDASNSSLNRSLGIVQNVQQEVESNIDKALAPFLGMDNFRSS 239

Query: 262 VVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
           V A+LN D QQI+E  YDP+SKVERS+R +K+A
Sbjct: 240 VTADLNTDAQQIQETTYDPESKVERSVRSTKEA 272


>gi|311068142|ref|YP_003973065.1| flagellar MS-ring protein [Bacillus atrophaeus 1942]
 gi|310868659|gb|ADP32134.1| flagellar MS-ring protein [Bacillus atrophaeus 1942]
          Length = 530

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 108/576 (18%), Positives = 219/576 (38%), Gaps = 69/576 (11%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M + ++  +F+ + +   +T+ +++ S     I+L      F +S     LY  L   + 
Sbjct: 1   MQLKNKTSEFWNNRS---KTQKVLMISSFAAIIILITVISIFSSSEKMVPLYKDLSAEEA 57

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +I   L    +   +SD G+ I VP   V   ++ LAA+GLP + S   Y  F +   F
Sbjct: 58  GQIKEELDAKKVPSELSDGGTVIKVPEEQVDTLKVQLAAEGLPKTGS-IDYSFFGQNAGF 116

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRA 179
           GLT    ++ +V A + E++  I  + GI  ++V I +P    F  +  +  +AS++++ 
Sbjct: 117 GLTDNEFDMLKVEATQTELSNLINEMKGIKNSKVMINLPKDAVFVGEEQSTASASIVLQM 176

Query: 180 INP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ-- 235
                        + HLV+ +VPNL   ++ ++D        +  +      S S  Q  
Sbjct: 177 NPGYTLDQSQVNGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSNGDAGSYADSYSSQQGI 236

Query: 236 --AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP------DSKVERS 287
              ++ +I+ ++   L   +G D    +V  +++   +   E + +P      +     +
Sbjct: 237 KTQVEKDIQKHVQTLLGTMMGQDKVVVSVTTDIDFTKENRTEDLVEPVDKENMEGIAVSA 296

Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
            ++++  Q    +   +A T +++    +  +        N DK   + NYE+N      
Sbjct: 297 EKVAETYQGDNAANGGTAGTGDEDTTGYA--QTDENSENGNYDKSSNKINYEVNRIHKEI 354

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT-- 405
               YK+  L I V+V           S ++      + +I   V   + I+    D   
Sbjct: 355 AESPYKVRDLGIQVMVEPPDAKNTASLSTER---QDDIQKILATVVRTS-IDKDSQDQEL 410

Query: 406 --------ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457
                   I ++   F      ++ + + S + I       V+ A + ++  +LV     
Sbjct: 411 TDEEINNKIVLSVQPFDGKVSLDTASEKSSVLPIWVYIAGGVLLAAIIVLIIMLV----- 465

Query: 458 HALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS 517
               R    ++ +  E                 T   P + I L   N++       ++ 
Sbjct: 466 ----RKKRSNEDEYEEW----------------TYETPQEPINLPDINEEESETEETVR- 504

Query: 518 RINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                       +L  M +   E FAK+LR W   +
Sbjct: 505 ----------RKQLEKMAKDKPEDFAKLLRSWLTED 530


>gi|255022056|ref|ZP_05294062.1| Flagellar M-ring protein fliF [Acidithiobacillus caldus ATCC 51756]
 gi|254968542|gb|EET26098.1| Flagellar M-ring protein fliF [Acidithiobacillus caldus ATCC 51756]
          Length = 599

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 125/588 (21%), Positives = 238/588 (40%), Gaps = 46/588 (7%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
              ++ S     R R+ IL  + LV +   +     V+   Y  +Y  L       +  A
Sbjct: 14  FRNWWHSRN--QRQRLTILGGIALV-LAASLGIGEAVSHTSYAVVYSGLSPQTGGSVIAA 70

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L +  I FR+ DNG+ I VP +   + R+ LA QGLP+ ++++ +    +    G +SF+
Sbjct: 71  LQKGGIPFRLLDNGNVIEVPKADAARVRLQLAEQGLPAQATSALWHQL-QNEKLGTSSFV 129

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
           +  T +RALE  +++ I+SI G+ AA V++ +P+   F +    P A+V ++     +  
Sbjct: 130 EHTTYIRALEAGLSKDIESIQGVEAATVNLAIPNRTPFLERMPSPKAAVTLKLAPGMMLT 189

Query: 187 SAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN 244
             +   I HLVA++VP L  G VTV+D  G+ LTA           L + Q ++      
Sbjct: 190 QEQVYGITHLVASSVPGLKAGSVTVVDQYGRALTAKPTGSQSSAI-LRLQQRVESAYRKQ 248

Query: 245 INKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           I   LA  + G  N R AV A +++   Q   + Y     V  ++  S+  + S +S   
Sbjct: 249 IVDLLAPIVGGKRNLRVAVDANIDLSHTQKSFVTYGMGHVVTAAVESSR-TKGSASSSTF 307

Query: 304 SAVTVEQNMPHVSDRK---VPLPRSLEN------------TDKKEEQSNYEINTKSIATT 348
                  N P  + +     P   +               + +  ++ +Y ++     T 
Sbjct: 308 GIPGALSNQPPGNPQAPITAPATSAAPGLTLQEIRAMIPRSSQANQRFHYVLDKTVGFTK 367

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR------ 402
            + ++L  LS++V++N   ++     SA +    S ++ ++   ++A    S+R      
Sbjct: 368 GEPWRLTSLSVSVLINGKSISPTSAVSA-KPVSASTVSGVSAATTSAVRPASKRRTLAGI 426

Query: 403 ---GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF------LVGTLLVT 453
              G    +     + N +  S       + +L       I  L +       V    + 
Sbjct: 427 PEYGPKTLLQLKRMVTNTIHASAPQGTVVLSVLPYERPAPIPHLPWWRRISPWVVWSRLE 486

Query: 454 FLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR 513
           +  L  +  L     A +     K+I S  P S A ++G    D    +       S S 
Sbjct: 487 WFLLGLIALLLFRKLAVEFMKQRKTIFSQQPSSDASSSGEDAPDKGRSNVPPVQNVSPSI 546

Query: 514 NLQ------SRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
            L       + ++    +++   +  +I  +  R  +++R+W  +  E
Sbjct: 547 PLDHATLDLNGVSQASLEENLNTIKELIRSDTVRAVEVIREWIGNLGE 594


>gi|321315387|ref|YP_004207674.1| flagellar MS-ring protein [Bacillus subtilis BSn5]
 gi|320021661|gb|ADV96647.1| flagellar MS-ring protein [Bacillus subtilis BSn5]
          Length = 531

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 101/575 (17%), Positives = 225/575 (39%), Gaps = 66/575 (11%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M + ++  +F+K+ + L +   +++ S +   I++ +    F ++     LY  L   + 
Sbjct: 1   MQMKNKTSEFWKNRSKLQK---ILMVSALAAIIIIGIIISVFASNSKMAPLYKDLSAEEA 57

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +I   L    +   +S+ G+ ISVP   V   ++ +AA+GLP + S   Y  F +   F
Sbjct: 58  GQIKEELDAKKVPNELSNGGTVISVPEDQVDSLKVQMAAEGLPKTGS-IDYSFFGQNAGF 116

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRA 179
           GLT    ++ +V+A + E++  I  + GI +++V I +P    F  +  +  +AS++++ 
Sbjct: 117 GLTDNEFDMVKVKATQTELSNLINEMDGIKSSKVMINLPKDAVFVGEEQSAASASIVLQI 176

Query: 180 INP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ-- 235
                        + HLV+ +VPNL   ++ ++D        ++ +      S S  Q  
Sbjct: 177 QPGYTLDQSQINGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSDSDAGSYADSYSSQQGI 236

Query: 236 --AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP------DSKVERS 287
              ++ +I+ ++   L   +G D    +V A+++   +   E + +P      +     +
Sbjct: 237 KSQVEKDIQKHVQSLLGTMMGQDKVVVSVTADIDFTKENRTEDIVEPVDKENMEGIAVSA 296

Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
            ++S+  Q    +   +A T E+++ +             N +K   + NYE+N      
Sbjct: 297 EKVSETYQGDGAANGGTAGTGEEDVTNYKADGENTESG--NYEKNSNKINYEVNRIHKEI 354

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
               YK+  L I V+V           S +  + D     ++ +V  +   +  +   ++
Sbjct: 355 AESPYKVRDLGIQVMVEPPDAKNTASLSTE--RQDDIQKILSTVVRTSLDKDETQNQNLS 412

Query: 408 ---------ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
                    ++   F      ++ T + S + + +     V+ A + ++  +L+      
Sbjct: 413 DADINNKIVVSVQPFDGKVNLDTNTEKSSGIPLWAYIVGGVLIAAIIVLIIMLI------ 466

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
                                              +P + I L   N++    + +++  
Sbjct: 467 -------------------RKKRAQEDEFEEYEYEVPQEPINLPDINEEENETAESVR-- 505

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                      +L  M +   E FAK+LR W   +
Sbjct: 506 ---------RKQLEKMAKDKPEDFAKLLRSWLAED 531


>gi|289670544|ref|ZP_06491619.1| flagellar MS-ring protein [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 335

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 74/315 (23%), Positives = 143/315 (45%), Gaps = 6/315 (1%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++  Q+F    SL  TR L + ++I + +   +A  F+   P Y +LY  L+       +
Sbjct: 15  EKAGQWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAA 74

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L  A I ++I     +ISVP   +  AR+ LA  GL    +  G+EL +K   FG++ 
Sbjct: 75  DLLRTAQIPYKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQ 134

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           F++      ALE E++RTI ++  +  ARVH+ +P   +F +     +ASV++       
Sbjct: 135 FVENARYQHALETELSRTISTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQG 194

Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240
            +    +AI +LVA+++P++    VTV+D +G++L+  +   +          V+  +  
Sbjct: 195 LERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESS 254

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I + L    G          +++    +    +Y+ +    RS +++  +  +  +
Sbjct: 255 YNQRIRELLEPMTGPGRVNPETSVDMDFSVVEEARELYNGEPAKLRSEQVNDTS--TTAT 312

Query: 301 QPESAVTVEQNMPHV 315
            P+       N P  
Sbjct: 313 GPQGPPGATSNSPGQ 327


>gi|16078684|ref|NP_389503.1| flagellar MS-ring protein [Bacillus subtilis subsp. subtilis str.
           168]
 gi|120324|sp|P23447|FLIF_BACSU RecName: Full=Flagellar M-ring protein
 gi|2633993|emb|CAB13494.1| flagellar basal-body M-ring protein [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 536

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 101/575 (17%), Positives = 224/575 (38%), Gaps = 66/575 (11%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M + ++  +F+K+ + L +   +++ S +   I++ +    F ++     LY  L   + 
Sbjct: 6   MQMKNKTSEFWKNRSKLQK---ILMVSALAAIIIIGIIISVFASNSKMAPLYKDLSAEEA 62

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +I   L    +   +S+ G+ ISVP   V   ++ +AA+GLP + S   Y  F +   F
Sbjct: 63  GQIKEELDAKKVPNELSNGGTVISVPEDQVDSLKVQMAAEGLPKTGS-IDYSFFGQNAGF 121

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRA 179
           GLT    ++ +V+A + E++  I  + GI  ++V I +P    F  +  +  +AS++++ 
Sbjct: 122 GLTDNEFDMVKVKATQTELSNLINEMDGIKNSKVMINLPKDAVFVGEEQSAASASIVLQI 181

Query: 180 INP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ-- 235
                        + HLV+ +VPNL   ++ ++D        ++ +      S S  Q  
Sbjct: 182 QPGYTLDQSQINGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSDSDAGSYADSYSSQQGI 241

Query: 236 --AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP------DSKVERS 287
              ++ +I+ ++   L   +G D    +V A+++   +   E + +P      +     +
Sbjct: 242 KSQVEKDIQKHVQSLLGTMMGQDKVVVSVTADIDFTKENRTEDIVEPVDKENMEGIAVSA 301

Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
            ++S+  Q    +   +A T E+++ +             N +K   + NYE+N      
Sbjct: 302 EKVSETYQGDGAANGGTAGTGEEDVTNYKADGENTESG--NYEKNSNKINYEVNRIHKEI 359

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
               YK+  L I V+V           S +  + D     ++ +V  +   +  +   ++
Sbjct: 360 AESPYKVRDLGIQVMVEPPDAKNTASLSTE--RQDDIQKILSTVVRTSLDKDETQNQNLS 417

Query: 408 ---------ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
                    ++   F      ++ T + S + + +     V+ A + ++  +L+      
Sbjct: 418 DADINNKIVVSVQPFDGKVNLDTNTEESSGIPLWAYIVGGVLIAAIIVLIIMLI------ 471

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
                                              +P + I L   N++    + +++  
Sbjct: 472 -------------------RKKRAQEDEFEEYEYEVPQEPINLPDINEEENETAESVR-- 510

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                      +L  M +   E FAK+LR W   +
Sbjct: 511 ---------RKQLEKMAKDKPEDFAKLLRSWLAED 536


>gi|221309496|ref|ZP_03591343.1| flagellar MS-ring protein [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221313821|ref|ZP_03595626.1| flagellar MS-ring protein [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221318745|ref|ZP_03600039.1| flagellar MS-ring protein [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221323016|ref|ZP_03604310.1| flagellar MS-ring protein [Bacillus subtilis subsp. subtilis str.
           SMY]
          Length = 531

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 101/575 (17%), Positives = 224/575 (38%), Gaps = 66/575 (11%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M + ++  +F+K+ + L +   +++ S +   I++ +    F ++     LY  L   + 
Sbjct: 1   MQMKNKTSEFWKNRSKLQK---ILMVSALAAIIIIGIIISVFASNSKMAPLYKDLSAEEA 57

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +I   L    +   +S+ G+ ISVP   V   ++ +AA+GLP + S   Y  F +   F
Sbjct: 58  GQIKEELDAKKVPNELSNGGTVISVPEDQVDSLKVQMAAEGLPKTGS-IDYSFFGQNAGF 116

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRA 179
           GLT    ++ +V+A + E++  I  + GI  ++V I +P    F  +  +  +AS++++ 
Sbjct: 117 GLTDNEFDMVKVKATQTELSNLINEMDGIKNSKVMINLPKDAVFVGEEQSAASASIVLQI 176

Query: 180 INP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ-- 235
                        + HLV+ +VPNL   ++ ++D        ++ +      S S  Q  
Sbjct: 177 QPGYTLDQSQINGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSDSDAGSYADSYSSQQGI 236

Query: 236 --AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP------DSKVERS 287
              ++ +I+ ++   L   +G D    +V A+++   +   E + +P      +     +
Sbjct: 237 KSQVEKDIQKHVQSLLGTMMGQDKVVVSVTADIDFTKENRTEDIVEPVDKENMEGIAVSA 296

Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
            ++S+  Q    +   +A T E+++ +             N +K   + NYE+N      
Sbjct: 297 EKVSETYQGDGAANGGTAGTGEEDVTNYKADGENTESG--NYEKNSNKINYEVNRIHKEI 354

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
               YK+  L I V+V           S +  + D     ++ +V  +   +  +   ++
Sbjct: 355 AESPYKVRDLGIQVMVEPPDAKNTASLSTE--RQDDIQKILSTVVRTSLDKDETQNQNLS 412

Query: 408 ---------ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
                    ++   F      ++ T + S + + +     V+ A + ++  +L+      
Sbjct: 413 DADINNKIVVSVQPFDGKVNLDTNTEESSGIPLWAYIVGGVLIAAIIVLIIMLI------ 466

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
                                              +P + I L   N++    + +++  
Sbjct: 467 -------------------RKKRAQEDEFEEYEYEVPQEPINLPDINEEENETAESVR-- 505

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                      +L  M +   E FAK+LR W   +
Sbjct: 506 ---------RKQLEKMAKDKPEDFAKLLRSWLAED 531


>gi|306820113|ref|ZP_07453761.1| flagellar M-ring protein FliF [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304551891|gb|EFM39834.1| flagellar M-ring protein FliF [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 521

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 103/571 (18%), Positives = 228/571 (39%), Gaps = 68/571 (11%)

Query: 1   MAILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLE 56
           M +L+ +     S         + +I+ +   I+V +++ ++   +     Y  LY  L+
Sbjct: 1   MYVLENINSVRNSINSYLEKYTKKQIITVGISIVVILIVMVSMIMYFTRTKYVTLYSNLD 60

Query: 57  VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
           ++ +++++ +L    + +++    +SISVP S   K  I LA Q +P++  +  +     
Sbjct: 61  LNTMSKVTQSLDSMGVQYKVDSQ-NSISVPESSRNKIMIDLAGQNIPNAKFD--FSNLIN 117

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARPTAS 174
           +NS  ++   +   +  AL  +I+  I+SI  +  A+V + +P    F   +   +P AS
Sbjct: 118 MNSMFMSDDEKNTAKQYALTNQISSIIESIPAVEKAQVTLAIPKNSEFVLSENKQQPKAS 177

Query: 175 VMIRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGK 229
           VM+   + S         I  +VA +V  L+  +VT+    G++L  N   +N     G 
Sbjct: 178 VMLILKSGSQLSQDSINGIASMVAGSVEGLEPQNVTIHGPNGQILNQNSTGQNANMQTGT 237

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD-----SKV 284
           +L + + ++ +IE ++   LA   G +NF   V  +LN D +  +   + P      S +
Sbjct: 238 NLEMQEKVKRDIENSLQNFLAPMFGYNNFSVMVSVKLNFDNETTQTKTFAPPVEGETSGL 297

Query: 285 ERSIRLSKDAQRSETS--QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINT 342
            RS +  K+   ++ +        +        ++          + ++ E   NYE+N 
Sbjct: 298 VRSEQQQKEQVENKNNALGTPGVTSNNNEAGGTTNYVTVDENGNSSYNRSESTVNYELNE 357

Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402
                      ++ ++++V++NK  L             D    +I  +++ ATG++++ 
Sbjct: 358 IVKNVEKARGTIDSVTVSVILNKDTLEG-------GELSDEKRTQIVNLITTATGLDTK- 409

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
              + + +  F +    ++   Q S    + +  A  + AL+ L+       L +  LRR
Sbjct: 410 --AVEVFAESFNKTDELSAQNTQGSI--PMWQWIAIAVIALIPLIL------LTVTMLRR 459

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
               +  ++ +    + +       A+  G+                             
Sbjct: 460 SKAKNKKEELKKLENNAIRQQEEIEAIEIGM----------------------------- 490

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                   +  +I+ N E   ++L+ W   E
Sbjct: 491 KESGKKKSIEDLIQKNPEIVTQLLKTWIEEE 521


>gi|157738171|ref|YP_001490855.1| flagellar M-ring protein FliF [Arcobacter butzleri RM4018]
 gi|157700025|gb|ABV68185.1| flagellar M-ring protein FliF [Arcobacter butzleri RM4018]
          Length = 574

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 106/433 (24%), Positives = 201/433 (46%), Gaps = 30/433 (6%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVN------SPHYDNLYVKLEV 57
           +DQLL+F  +     R   +IL S   +  ++ +    + +        +Y  +   L  
Sbjct: 1   MDQLLKFINNLNKSQR---IILVSGFALLFIIVVGFLIYSSIKAEDKKLNY-TIASNLTQ 56

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSM--VGKARIHLAAQGLPSSSSNSGYELFD 115
           +DV R S  L  + I F +S +G+++++ +S   +  A+I L      +++ + G+E+F+
Sbjct: 57  ADVMRASEELEASGIQFVVSGSGNNLTLKTSQEFINIAKIKLVTSE-AATNKHVGWEIFE 115

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
           K +S G T+F  ++  +RALEGE++R+++S+SG++ A V I +P    F +  A  TAS 
Sbjct: 116 K-SSLGTTNFENKVKYLRALEGELSRSLESLSGVLKANVKIAIPKETIFTEKRADTTASA 174

Query: 176 MIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSL 231
           +I          K  + I++ +A+AVP+L   ++ ++D  G LL  N  E N        
Sbjct: 175 VISLKQGIHLTKKQIDGIKNFIASAVPDLKQENIQLIDQDGNLLEQNIDEENTIKSAAQN 234

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
                I+ + E  I   L   +G     + V   L+   + + E +Y P+  + RS ++ 
Sbjct: 235 KYKDKIEKDYEAKIISLLEPVVGTGRVVAKVNVALDFVKKDVEEEIYSPEGSI-RSQQVI 293

Query: 292 KDAQRSETSQP--ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
           ++   ++   P       V+ N+  V        +   N++     +NYEI+ K I+   
Sbjct: 294 ENTNNTQGMLPNNGGVAGVDNNI-QVPTTVGDGSKISSNSEGSNTVTNYEISRKVISQKD 352

Query: 350 DNYK-LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
            NY  ++R++ +V  +   L        D      ++A +  +   A G +  RGDTIT+
Sbjct: 353 GNYTNIKRITASVTFDSAILK-------DHPDKGEFIASLESLSGDAIGYDRGRGDTITV 405

Query: 409 TSMDFLENQLFNS 421
               F+  +  N 
Sbjct: 406 KDFKFVGAKALNE 418


>gi|315636314|ref|ZP_07891564.1| flagellar M-ring protein FliF [Arcobacter butzleri JV22]
 gi|315479403|gb|EFU70086.1| flagellar M-ring protein FliF [Arcobacter butzleri JV22]
          Length = 574

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 105/433 (24%), Positives = 200/433 (46%), Gaps = 30/433 (6%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVN------SPHYDNLYVKLEV 57
           +DQLL+F  +     R   +IL S   +  ++ +    + +        +Y  +   L  
Sbjct: 1   MDQLLKFINNLNKSQR---IILVSGFALLFIIVVGFLIYSSIKAEDKKLNY-TIASNLTQ 56

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSM--VGKARIHLAAQGLPSSSSNSGYELFD 115
           +DV R S  L  + I F +S +G+++++ +S   +  A+I L      +++ + G+E+F+
Sbjct: 57  ADVMRASEELEASGIQFVVSGSGNNLTLKTSQEFINIAKIKLVTSE-AATNKHVGWEIFE 115

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
           K +S G T+F  ++  +RALEGE++R+++S+SG++ A V I +P    F +  A  TAS 
Sbjct: 116 K-SSLGTTNFENKVKYLRALEGELSRSLESLSGVLKANVKIAIPKETIFTEKRADTTASA 174

Query: 176 MIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSL 231
           +I          K  + I++ +A+AVP+L   ++ ++D  G LL  N  E N        
Sbjct: 175 VISLKQGIHLTKKQIDGIKNFIASAVPDLKQENIQLIDQDGNLLEQNIDEENTIKSAAQN 234

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
                I+ + E  I   L   +      + V   L+   + + E +Y P+  + RS ++ 
Sbjct: 235 KYKDKIEKDYEAKIISLLEPVVETGRVVAKVNVALDFVKKDVEEEIYSPEGSI-RSQQVI 293

Query: 292 KDAQRSETSQP--ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
           ++   ++   P       V+ N+  V        +   N++     +NYEI+ K I+   
Sbjct: 294 ENTNNTQGMLPNNGGVAGVDNNI-QVPTTVGDGSKISSNSEGSNTVTNYEISRKVISQKD 352

Query: 350 DNYK-LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
            NY  ++R++ +V  +   L        D      ++A +  +   A G +  RGDTIT+
Sbjct: 353 GNYTNIKRITASVTFDSAVLK-------DHPDKGEFIASLESLSGDAIGYDRGRGDTITV 405

Query: 409 TSMDFLENQLFNS 421
               F+  +  N 
Sbjct: 406 KDFKFVGAKALNE 418


>gi|89098644|ref|ZP_01171526.1| flagellar M-ring protein [Bacillus sp. NRRL B-14911]
 gi|89086606|gb|EAR65725.1| flagellar M-ring protein [Bacillus sp. NRRL B-14911]
          Length = 528

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 105/569 (18%), Positives = 215/569 (37%), Gaps = 68/569 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
            + L +F++S T   + +  ++A  +++ +++  AA           LY  L  S+   I
Sbjct: 9   FNPLKEFWQSRT---KKQKGLMAGSLILLLLIASAAVLLAGRTTMVPLYSNLSPSETGAI 65

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
             +L    I   I+D GS+I VP  +V   ++ LAA+G+P S S   Y  F +    G+T
Sbjct: 66  KESLDGRGIASEIADGGSTIMVPEEVVDTLKVELAAEGIPKSGS-IDYSFFSQNAGIGMT 124

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG-ARPTASVMIRAINP 182
                + ++ A++ E++  I+ I G+  A+V I +P+ G F        +AS+++     
Sbjct: 125 ENEFNVLKLDAMQTELSNLIKGIEGVNDAKVMINLPEKGIFINDQTEEASASIVLNTKPG 184

Query: 183 SV--YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQAI 237
                +  +++ HL++ +VPNL   ++ V +   +      +N+     +   L + + I
Sbjct: 185 YQFETEQIKSLYHLISKSVPNLPTDNIVVTNQFFEYFDLENSNDTSGKTITAQLDVKKQI 244

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD-----SKVERSIRLSK 292
           + +++  +   L+  +G +    +V A+++   +   E +  P        +  S +   
Sbjct: 245 ERDVQRQVQSMLSTLMGPEKVVVSVSADIDFTQENREENLVTPVDEENMEGIAISAKKIT 304

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
           +       +         N   +++       S  + ++ EE  N E+N          Y
Sbjct: 305 ETFTGSAEEAGGIAGTGDN--EITNYPGAAEGSNGDYERIEETINNEVNKIRKEIVESPY 362

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSA-----ATGI---NSRRGD 404
           K+  L I V+V      +    S  Q ++D     ++ IV       A G    +    D
Sbjct: 363 KVRDLGIQVMVEPPTADDPT--SLPQERVDDITQILSTIVRTTIDKKAAGADLTDEDIAD 420

Query: 405 TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
            + ++   F        G  +          +       V +   LL+ FL + A R+  
Sbjct: 421 KVVVSVQQF-------QGKTEFPEESAAVIPWWVYAIGGVLVAIILLLVFLFIRARRKSQ 473

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
                 + +V                        + +   N++  + S            
Sbjct: 474 EEQAELEEQVEP----------------------VTIKDVNEEQETES------------ 499

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSE 553
                +L  M +   E FAK+LR W   +
Sbjct: 500 SLRRKQLEKMAKEKPEDFAKLLRSWIAED 528


>gi|237751136|ref|ZP_04581616.1| flagellar M-ring protein [Helicobacter bilis ATCC 43879]
 gi|229373581|gb|EEO23972.1| flagellar M-ring protein [Helicobacter bilis ATCC 43879]
          Length = 563

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 103/572 (18%), Positives = 210/572 (36%), Gaps = 29/572 (5%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH----YDNLYVKLEV 57
           AI  QL    K      +  IL+   V +  +   + +            +  L+     
Sbjct: 5   AIFTQLQNLIKKLNRKQQIVILVTVVVFVAFLSYLIVSSLGSKKGDSVDGFGILFSAENP 64

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
           +D       L + NI +++ ++ ++I+VP   V   R  LAAQG+        Y++F   
Sbjct: 65  ADAGSAISYLKQQNIPYKMIND-NTIAVPQDQVFVLRNELAAQGIIKG--RVDYDIF-NE 120

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
           NSFG T    ++ ++RA++G++ +T+ +++ I  ARV I  P    F K  A P+ASV +
Sbjct: 121 NSFGATQSEFDVKKLRAIKGQLEKTLMALAPIQDARVEIAEPKDDVFVKTRAVPSASVAL 180

Query: 178 RAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKSLS 232
              +       +   I++L+A +   L   +V ++D  G  L   +    E     K+ +
Sbjct: 181 TLRDGMTLTQNQIFGIQNLIANSFNGLKPENVIMVDQYGNPLNKRDEATIENEQAFKNFA 240

Query: 233 IVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
                + EI   I ++L+    G D    +V  + +   Q+  E +Y  +S V       
Sbjct: 241 YKVQAEQEIANKIRQSLSRLAGGTDRMTVSVNLDYDFGKQESTEEIYSKESAVASESGKE 300

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
            + +      P     V  N+  V D       + E   + +   NY  + K+       
Sbjct: 301 IERKGLAPKDPGGVPGVINNIAEVKDLD---SNNREEYRESQFVKNYMPDKKTTTMRLQT 357

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSA-----DQGKIDSYLAEINKIVSAATGINSRRGDTI 406
            +L+R+++ VV++     E    +         +    LAEI KIV A++G +  R D +
Sbjct: 358 PQLKRMTVGVVIDGTYTEETNEETGFITMKYTPRSPEELAEIKKIVEASSGYDESRNDIV 417

Query: 407 TITSMDFLENQLFNSGTVQ-VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465
           ++ +                      + ++    +  L +++  +++ F     +     
Sbjct: 418 SVIAGQLNAIGSGTPPLTNFEKVAQAVEKYLGPFMPLLRYVLVVIVLFFFYKKVIAPFAE 477

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
                      +      P+          N    +    ++            ++    
Sbjct: 478 RMLEVHE----EEETEKQPLFDFDDDDDTLNRANEMRKRVEEQLGIGGGFNE--DAVKYD 531

Query: 526 QSDLRLLHMIEINEERFAKILRKWARSEIEDR 557
               ++   +    +  A + +   R EIE +
Sbjct: 532 VLLEKIKEAVRTKPDEIAGLFQALIRDEIEMK 563


>gi|217076889|ref|YP_002334605.1| flagellar M-ring protein FliF [Thermosipho africanus TCF52B]
 gi|217036742|gb|ACJ75264.1| flagellar M-ring protein FliF [Thermosipho africanus TCF52B]
          Length = 534

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 114/558 (20%), Positives = 223/558 (39%), Gaps = 45/558 (8%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
             +   F+K      +  +L L   IL+ ++L +     +N+P Y  L      +D   I
Sbjct: 11  FSKFPDFWKGLKKNQKITMLSLLVAILIAVVLTVI----LNAPKYVLLISANNETDAGAI 66

Query: 64  SVALSEANIDFRISDNGSSISVPSS-MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
              L    I +++   G+ I +PSS  V + R+ LA+      SS+ G+EL D+ +SFG 
Sbjct: 67  IQQLEAQGIPYKVEA-GNRIFIPSSYNVYEVRMKLASS-GALGSSSKGFELLDQ-SSFGA 123

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK-IGARPTASV--MIRA 179
           TSF +++   RAL+GE+ RTI +I+G+  ARVH+ +P    + +   A   ASV  ++  
Sbjct: 124 TSFDKQVNYQRALQGELERTIATINGVKFARVHLTLPKYTYYVRGEMAETRASVQLVLDP 183

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA---NEMERNILGKSLSIVQA 236
                 +  + I +L+  AV  L   +V V+D+ G+ L+     +         + +   
Sbjct: 184 GVSLSKEQIKGIIYLLTGAVEGLKPENVKVVDNYGRALSDLVNFDDNTVAASTKVELKMQ 243

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY-DPDSKVERSIRLSKDAQ 295
           ++   +  I  AL    G          +LN    +     Y  P   + RS + ++  +
Sbjct: 244 LESYYKKKIQPALETVFGFGTVEVIPDVKLNWQKAEKTITTYSTPKGGLIRS-QETESEK 302

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN-YKL 354
            +        V  E N+P    + +    S+   +K  + +NYE+N        +N  ++
Sbjct: 303 STTAPADGGPVGTESNIPTTYYQSIEG-SSVTLYEKNHQITNYELNQIVENIVQNNEGEI 361

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           E +S++V+++            +  K+ S +  I K ++A +  ++    + ++  + F 
Sbjct: 362 ENISLSVIIDSSSTVFNKISKEEINKMVSDV--IEKSIAANSSPSAI---SYSLAFIPFS 416

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
                         ++  ++       A + L+ T+LV F     L +L  +   K    
Sbjct: 417 RE----MEEEFSKIIEQQTKQKEFFYKATLLLIATILVFFGTYGFLLQLKKVKSRKLVLQ 472

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
             K +           TG             + I S ++ +   + +Y           +
Sbjct: 473 RYKMLEEEVQKVMEEKTGEEA----------EQILSEAQKVIEELRNYAK--------QL 514

Query: 535 IEINEERFAKILRKWARS 552
              + E  A I++ W   
Sbjct: 515 AVKSPEEVASIIKIWISE 532


>gi|296103640|ref|YP_003613786.1| flagellar M-ring protein [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295058099|gb|ADF62837.1| flagellar M-ring protein [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 302

 Score =  273 bits (697), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 87/275 (31%), Positives = 142/275 (51%), Gaps = 5/275 (1%)

Query: 14  GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73
            +SL  +  L+L       + + +A  F+   P Y  L+  +   +   I   LS+ N+ 
Sbjct: 20  LSSLRGSPKLLLVICGAAALSVIIALMFWAKEPDYRVLFSNISDEEGGAIVAQLSQLNVP 79

Query: 74  FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
           +RI   G  I VP+S V + R+ LA QGLP      G+EL D+   FG++ F +++   R
Sbjct: 80  YRIDTPGGVIMVPASQVHEVRMKLAQQGLPKGGG-VGFELLDQE-KFGVSQFTEQVNYQR 137

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAI 191
           ALEGE+ARTI+++  I +A VH+  P    F +   +PTASV +  +           AI
Sbjct: 138 ALEGELARTIENLGPIQSACVHLATPKPSMFVREQKKPTASVTVNLLQGRTLDDSQVVAI 197

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAA 251
            HL+++AV  L  G VT++D  G LLT + + R +    L     I+ + +  I + LA 
Sbjct: 198 THLISSAVTGLAAGSVTIVDQRGNLLTQSGL-RGLQTAHLKYTSEIETDYQQRIQRILAP 256

Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVER 286
            +G +N R+ V A+++   Q+  +  Y P+S  E+
Sbjct: 257 LVGDENIRAQVTAQIDFTEQEQTQEQYQPNSDPEK 291


>gi|333004041|gb|EGK23575.1| flagellar M-ring protein domain protein [Shigella flexneri K-272]
 gi|333017814|gb|EGK37121.1| flagellar M-ring protein domain protein [Shigella flexneri K-227]
          Length = 261

 Score =  273 bits (697), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 77/258 (29%), Positives = 131/258 (50%), Gaps = 8/258 (3%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           + L++     +  +  +++  S     + + +A   +  +P Y  L+  L   D   I  
Sbjct: 9   KSLEWLNRLRANPKIPLIVTGS---AAVAVMVALILWAKAPDYRTLFSNLSDQDGGAIVS 65

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F
Sbjct: 66  QLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQF 123

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
            +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +     
Sbjct: 124 SEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRAL 183

Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIE 242
                 AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++  I+
Sbjct: 184 DEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQ 243

Query: 243 MNINKALAAFLGVDNFRS 260
             I   L+  +G  N  +
Sbjct: 244 RRIEAILSPIVGNGNIHA 261


>gi|332756092|gb|EGJ86445.1| flagellar M-ring protein domain protein [Shigella flexneri 4343-70]
 gi|333003272|gb|EGK22818.1| flagellar M-ring protein domain protein [Shigella flexneri K-218]
          Length = 261

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 77/258 (29%), Positives = 131/258 (50%), Gaps = 8/258 (3%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           + L++     +  +  +++  S     + + +A   +  +P Y  L+  L   D   I  
Sbjct: 9   KSLEWLNRLRANPKIPLIVTGS---AAVAVMVALILWAKAPDYRTLFSNLSDQDGGAIVS 65

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F
Sbjct: 66  QLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQF 123

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
            +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +     
Sbjct: 124 SEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRAL 183

Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIE 242
                 AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++  I+
Sbjct: 184 DEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQ 243

Query: 243 MNINKALAAFLGVDNFRS 260
             I   L+  +G  N  +
Sbjct: 244 QRIEAILSPIVGNGNIHA 261


>gi|299066535|emb|CBJ37725.1| putative Flagellar M-ring protein FliF [Ralstonia solanacearum
           CMR15]
          Length = 506

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 94/423 (22%), Positives = 171/423 (40%), Gaps = 32/423 (7%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +   ++  ++L R  ++  A  I V + +F    ++     Y  L+  L   D   +   
Sbjct: 8   IRDLWEGLSALARAGLVAGAICIAVAMGVF---SYWALHTDYQVLFSDLTPQDSAAMVAE 64

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L    + +++ D G+SI V    V K RI L  + LP   +  G ELF   + FG+T F 
Sbjct: 65  LDRLKVPYQLGDQGTSILVARDQVYKTRIKLMGKDLPLHGA-VGLELF-NNSDFGMTEFA 122

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY- 185
           Q+I   RAL+GE+ RTI S+S I   RVH+ +P+ G F++ G+R  A+V +      V  
Sbjct: 123 QKINYQRALQGELTRTILSLSEIHDVRVHLALPEQGLFKQAGSRAKAAVTLTLKQGQVLR 182

Query: 186 -KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQAIQHEI 241
            +    I+ LV+A+VP +   DVT++D  G  L   +  E E +     L + +  ++ +
Sbjct: 183 PEQITGIQRLVSASVPGIATQDVTIVDQHGVALTRASGAEGEIDATSGRLDLKKETENYL 242

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           +  +   L    G     ++V   L+MD  Q       P +            +  E+ +
Sbjct: 243 QRKVADVLERSFGPGQSIASVDVTLDMDRIQTTTEDVIPAASRTGHTPSGVVTRERESVR 302

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
              A           D +V            + +++Y +  +          + R+ +  
Sbjct: 303 DNGAP---------LDTRVADASGGARGGSSQRETDYAVGRRVEQVVSQPGSVRRIQVVA 353

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           +V                        + ++V+AA G +  RGD++ +  +  L  Q    
Sbjct: 354 MV-------------RTPLDADQQERLRRLVAAAAGASFERGDSVVVQPLGALVTQGAVD 400

Query: 422 GTV 424
              
Sbjct: 401 APA 403


>gi|310659045|ref|YP_003936766.1| flagellar m-ring protein flif [Clostridium sticklandii DSM 519]
 gi|308825823|emb|CBH21861.1| Flagellar M-ring protein FliF [Clostridium sticklandii]
          Length = 521

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 116/568 (20%), Positives = 225/568 (39%), Gaps = 62/568 (10%)

Query: 1   MAILDQLLQFFKSGT-SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           M   + +       +      + ++L  + +  +++  A  F+   P+Y  LY  +++  
Sbjct: 1   MDFFNDIKDKTGKLSEKYSNKQKIMLGGLAVGLVVITTAMIFYFTRPNYVTLYRDIDLKT 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
            + ++  L E  I +R++ + +SISVP + + KA++ LA  GLP ++ +  Y      NS
Sbjct: 61  ASEVTSQLDELKIPYRLNQD-NSISVPDTYINKAKVDLAGAGLPEATFD--YNDLINRNS 117

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMI 177
             ++   +   R  AL+ EIA  IQSI G+  A V++ +P    F  ++      ASV +
Sbjct: 118 MFMSDDEKNQARNYALQNEIANVIQSIPGVKKAFVNLSIPKTQEFILQENKIDAKASVFL 177

Query: 178 RAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLS 232
              +         + I  LVA +V  L   +VTV    G++L  +  + N   +   +L 
Sbjct: 178 NLDDKISLDQTSIQGITMLVANSVEGLKPENVTVHGPNGQVLNEDSTDTNNILVSQTNLE 237

Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP------DSKVER 286
           +   ++ ++E ++N  LA   G  N       +LN DT   +   + P      D  V  
Sbjct: 238 LQNKVKLDVEKSLNNFLAPIYGYGNVSVMASVKLNFDTDNTQSKSFAPPIEGETDGLVRS 297

Query: 287 SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346
                +  + S+ +     V        V    +       N DK E   NYE+N     
Sbjct: 298 LQENIEKVENSQEAVGNPGVDANAEEEVVDYATLDPNALNSNYDKNERIVNYELNEIVKT 357

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
                 ++E L++AVV+NK  L             +    EI  +++AATG+ ++   ++
Sbjct: 358 VEKAKGQIENLTVAVVLNKDSLEG-------GELTEEQRTEIASLINAATGLETK---SV 407

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLL-VTFLGLHALRRLHN 465
            I +  F ++       +Q +  D   +    +   + F V  L+ +  +G++       
Sbjct: 408 EIYAQSFNQD-------IQNALSDTAGQEGIPIWMWIAFAVIALIPILAIGIYM------ 454

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
           I   +K +      L   P  SA++   +    + +  S                     
Sbjct: 455 IMKRRKEKKKEAEKLLEIPQESAISKAAVEQIELEIKESG-------------------- 494

Query: 526 QSDLRLLHMIEINEERFAKILRKWARSE 553
                +  +I+ N E   ++L+ W   +
Sbjct: 495 -RKKSIESLIDTNPEIVTQLLKTWLDED 521


>gi|322382303|ref|ZP_08056210.1| flagellar MS-ring protein-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321153656|gb|EFX46031.1| flagellar MS-ring protein-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 527

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 102/566 (18%), Positives = 229/566 (40%), Gaps = 54/566 (9%)

Query: 3   ILDQLLQFF----KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           + +++ Q++    +      +   + L +  +  I+      + ++   Y   +  L+ +
Sbjct: 1   MNEKIGQYWGRVKQYWNKYSKKTKITLIAAAVFMILTVGIISYNLSKTEYSTAFTNLQPN 60

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
               I   L +  I +++S +G SI VP++ V + +I + ++GL     N GY +FD+  
Sbjct: 61  AAADIKAYLDQEKIPYKLSADGKSIGVPTAQVAEVKIAVESKGLNKGG-NVGYGIFDQSG 119

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMI 177
           SFG T    E+ ++ A++GE+ + I S   I  ++V I +P+ G F  K   + +ASV++
Sbjct: 120 SFGTTDNQFEMQKLNAMQGELQQLINSNQAIANSKVLINIPEQGVFLSKNEEKASASVVL 179

Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK-----S 230
                        + I +LV+ +V NL + ++T+ D  G+ +  ++ + +  G       
Sbjct: 180 EVKQGYTLDQNQIDTIYNLVSHSVKNLPLDNITIADQFGQYMVPSKADGSPQGSTQVANQ 239

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD-PDSKVERSIR 289
             + +  + +++ NI   LA   G +     VV+ +N D ++ +E +   P+   ++ + 
Sbjct: 240 FQVKKQFESDMQRNIVNLLAPMYGQNKVVVNVVSTMNFDQKKTKEQLVSAPNQDEQKGLE 299

Query: 290 LS-KDAQRSETSQPESAVTVE-QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
           +S ++ Q+S +S   +A  V       V   +         +++ ++  NYE+N  +   
Sbjct: 300 ISVQELQKSASSDGATAGGVAGSGTNDVPGYESTSNSGNSKSEENQKTVNYEVNRITNDI 359

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
               Y ++ L+I V ++   +    G+  +   +++ +  I K   A +G+   + D   
Sbjct: 360 IRAPYVVKDLNITVAIDTKSVNGNPGKIENAELLENAMKGIVKTALADSGVEYEQAD--- 416

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
                 ++ ++        S     + +    +      +  L +    + ALRR     
Sbjct: 417 ------IDKKVTIIPKELQSPSSTTASNLNNYLLYGGIGLAALALIAGTVFALRRRKK-- 468

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
                                     +      ++    DI + + + Q R         
Sbjct: 469 -----------------NLLEEEEEYITTGQQQMEYPTIDIENVTNDNQVR--------- 502

Query: 528 DLRLLHMIEINEERFAKILRKWARSE 553
             +L  + +   E F  +LR W   E
Sbjct: 503 -KQLETLAKKKPEEFVNLLRTWLVDE 527


>gi|333003033|gb|EGK22587.1| flagellar M-ring protein domain protein [Shigella flexneri VA-6]
          Length = 261

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 77/258 (29%), Positives = 131/258 (50%), Gaps = 8/258 (3%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           + L++     +  +  +++  S     + + +A   +  +P Y  L+  L   D   I  
Sbjct: 9   KSLEWLNRLRANPKIPLIVTGS---AAVAVMVALILWAKAPDYRTLFSNLSDQDGGAIVS 65

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F
Sbjct: 66  QLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQF 123

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
            +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +     
Sbjct: 124 SEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPSRAL 183

Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIE 242
                 AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++  I+
Sbjct: 184 DEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQ 243

Query: 243 MNINKALAAFLGVDNFRS 260
             I   L+  +G  N  +
Sbjct: 244 RRIEAILSPIVGNGNIHA 261


>gi|255305272|ref|ZP_05349444.1| flagellar MS-ring protein [Clostridium difficile ATCC 43255]
          Length = 516

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 114/571 (19%), Positives = 220/571 (38%), Gaps = 82/571 (14%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            I +Q+ +     +SL +   + L   ++   +  +      +   Y  L+ +L+V D  
Sbjct: 8   KIKEQVAKSRTKISSLKKGTKIALGIGVVAICLALVFTAISASKNKYAVLFSELDVQDAA 67

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            IS  L    ID ++   GS+I VP + V K R+ LA      +  + G+ L D  +S G
Sbjct: 68  DISAELESKKIDTKVK--GSTIYVPRTEVDKLRLELAPS---LTGGSKGFALMDDSSSIG 122

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           LT    +I + R ++GEI +TI+S   +   RVHI   +   F K     +A+V +    
Sbjct: 123 LTDEEFQIKKQRMIQGEIEKTIKSFPQVEDTRVHITFGESSVFEKEAVPGSAAVYLMLKP 182

Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-------------I 226
            +  +    +++  L++ +V N+   +V V+D+   LL+   +E                
Sbjct: 183 GTTLEKNQIKSVMALISGSVTNIPEKNVQVIDNKMNLLSEGILEDEDVDENNQPINGGIS 242

Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVER 286
           + K+ +  QA+  ++E +I + L    G    ++ V A+L+ DT +  EI  DPD    +
Sbjct: 243 VDKNKASEQALNKQLEKSILEMLEPIFGKGKVKATVNADLSFDTAEKTEIKIDPDKVAIK 302

Query: 287 SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346
             R SK++ +S T+  +            +             D  +E   YE       
Sbjct: 303 ETR-SKNSSKSATNNVQGV--------DANMNNQGNNNGTNTEDSLDESFEYETGKIETH 353

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
           T     +L RL+ +V ++      V              A++  IV+ A G++  RGDT+
Sbjct: 354 TIVAPGELNRLTASVAIDGKIAKGVQ-------------ADVEDIVNNAIGMDGARGDTL 400

Query: 407 TITSMDFLENQLFNSGTVQVSF-MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465
           ++ SM F       +         +   ++    +   V +V    + +L          
Sbjct: 401 SVVSMVFDPEGKAEAKQELEEIKKEGFKKNIIKAVIGAVAVVAIGAIGYLIYKKR----- 455

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
                                         ++   +D  ++D  S S ++  + N  +  
Sbjct: 456 ------------------------------SEQEDMDYEDEDYISKSDSVDRKDNPLLGD 485

Query: 526 QSDLRLLHMI----EINEERFAKILRKWARS 552
             +L L   +    E   ++  +I++ W   
Sbjct: 486 DPELTLEEAVKMYAEEKPDQVTEIIKTWLNE 516


>gi|157692300|ref|YP_001486762.1| flagellar MS-ring protein [Bacillus pumilus SAFR-032]
 gi|157681058|gb|ABV62202.1| flagellar basal-body M-ring protein [Bacillus pumilus SAFR-032]
          Length = 530

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 101/563 (17%), Positives = 221/563 (39%), Gaps = 48/563 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M +  + ++F+++ + L   +IL++  V  + I++ +    F +S     L+  L  S+ 
Sbjct: 6   MQLRTKTVEFWRNRSKL--QKILMIGGVAALAIIITV-VSIFASSEKMVPLFKDLSESEA 62

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +I   L    I   +++NG++I VP       ++ LA+QGLP +     Y  F   + F
Sbjct: 63  GQIKQELDGKKIKSELANNGTTILVPEKQADSLKVTLASQGLPKTGK-IDYSFFANNSGF 121

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRA 179
           GLT    ++ +V A + E++  I +I GI  ++V I +P    F  +  +  +AS++++ 
Sbjct: 122 GLTDNEFDVLKVDATQTELSNLINTIDGIKDSKVMINLPKDSVFVGEEQSNASASIVLQV 181

Query: 180 INP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIV 234
                   +  + + HL++ +VPNL   ++ ++D         ++++   + +       
Sbjct: 182 ERGYTLSPQQVKGLYHLISKSVPNLKTENIVIMDQDSNYYDLNSSSDSYASGMDAQQQKK 241

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-DSKVERSIRLSKD 293
           + I+  ++  I + L   +G +    +V  +++   ++ +E + +P D +  + I +S +
Sbjct: 242 EEIEKNLQRKIQQLLGTMMGQEKVAVSVTTDIDFTEEKRKEDLVEPVDKENMQGIAVSAE 301

Query: 294 ---AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
                 S             +    + +         N +K E++ NYE+N         
Sbjct: 302 KIAETYSGNGAAAGGTAGTGDDDVTNYQGADGANGSGNYEKSEDRINYEVNRIHKDIKES 361

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
            YK+  + I  +V      +V   +A+  + D     ++ I+S +       G  +T   
Sbjct: 362 PYKIRDVGIQALVEPPTANDVNSLTAE--RQDDIKKILSTIISTSIDKEYTNGQALTQAD 419

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           +   +N++  S +         + + +  I   V++VG                      
Sbjct: 420 L---DNKIVLSVSKLDGKQQTAAENPSNNIPIWVYIVG---------------------- 454

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
               G   +     I   V       +          +     + +      V K    +
Sbjct: 455 ----GVLLLAIIALIILLVRRRRKEEEEEFEFDERTPLHVPDIDTEPETEEMVRK---NQ 507

Query: 531 LLHMIEINEERFAKILRKWARSE 553
           L  M +   E FAK+LR W   +
Sbjct: 508 LEKMAKDKPEDFAKLLRSWLSED 530


>gi|254973912|ref|ZP_05270384.1| flagellar MS-ring protein [Clostridium difficile QCD-66c26]
 gi|255091298|ref|ZP_05320776.1| flagellar MS-ring protein [Clostridium difficile CIP 107932]
 gi|255312956|ref|ZP_05354539.1| flagellar MS-ring protein [Clostridium difficile QCD-76w55]
 gi|255515715|ref|ZP_05383391.1| flagellar MS-ring protein [Clostridium difficile QCD-97b34]
 gi|255648809|ref|ZP_05395711.1| flagellar MS-ring protein [Clostridium difficile QCD-37x79]
 gi|260682028|ref|YP_003213313.1| flagellar MS-ring protein [Clostridium difficile CD196]
 gi|260685626|ref|YP_003216759.1| flagellar MS-ring protein [Clostridium difficile R20291]
 gi|306518924|ref|ZP_07405271.1| flagellar MS-ring protein [Clostridium difficile QCD-32g58]
 gi|260208191|emb|CBA60528.1| flagellar M-ring protein [Clostridium difficile CD196]
 gi|260211642|emb|CBE01895.1| flagellar M-ring protein [Clostridium difficile R20291]
          Length = 516

 Score =  269 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 114/571 (19%), Positives = 221/571 (38%), Gaps = 82/571 (14%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            I +Q+ +     +SL +   + L   ++   +  +      +   Y  L+ +L+V D  
Sbjct: 8   KIKEQVAKSRTKISSLKKGTKIALGIGVIAICLALVFTAISASKNKYAVLFSELDVQDAA 67

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            IS  L    ID ++   GS+I VP + V K R+ LA      +  + G+ L D  +S G
Sbjct: 68  DISAELESKKIDTKVK--GSTIYVPRTEVDKLRLELAPS---LTGGSKGFALMDDSSSIG 122

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           LT    +I + R ++GEI +TI+S   +   RVHI   +   F K     +A+V +    
Sbjct: 123 LTDEEFQIKKQRMIQGEIEKTIKSFPQVEDTRVHITFGESSVFEKEAIPGSAAVYLMLKP 182

Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI------------- 226
            +  +    +++  L++ +V N+   +V V+D+   LL+   +E                
Sbjct: 183 GTTLEKNQIKSVMALISGSVTNIPEKNVQVIDNKMNLLSEGILEDEDVDENNQPTNSLIN 242

Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVER 286
           + K+ +  QA+  ++E +I + L    G    ++ V A+L+ DT +  EI  DPD    +
Sbjct: 243 VDKNKASEQALNKQLEKSILEMLEPIFGKGKVKATVNADLSFDTAEKTEIKIDPDKVAIK 302

Query: 287 SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346
             R SK++ +S T+  +            +             D  +E   YE       
Sbjct: 303 ETR-SKNSSKSATNNVQGV--------DANMNNQGNNNGTNTEDSLDESFEYETGKIETH 353

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
           T     +L RL+ +V ++      V              A++  IV+ A G++  RGDT+
Sbjct: 354 TIVAPGELNRLTASVAIDGKIAKGVQ-------------ADVEDIVNNAIGMDGARGDTL 400

Query: 407 TITSMDFLENQLFNSGTVQVSF-MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465
           ++ SM F       +         +   ++    +  +V +V    + +L          
Sbjct: 401 SVVSMVFDPEGKAEAKQELEEIKKEGFKKNIIKAVIGVVAVVAIGAIGYLIYKKR----- 455

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
                                         ++   +D  ++D  S S ++  + N  +  
Sbjct: 456 ------------------------------SEREDMDYEDEDYISKSDSVDRKDNPLLGD 485

Query: 526 QSDLRLLHMI----EINEERFAKILRKWARS 552
             +L L   +    E   ++  +I++ W   
Sbjct: 486 DPELTLEEAVKMYAEEKPDQVTEIIKTWLNE 516


>gi|126697819|ref|YP_001086716.1| flagellar MS-ring protein [Clostridium difficile 630]
 gi|115249256|emb|CAJ67069.1| Flagellar M-ring protein FliF [Clostridium difficile]
          Length = 516

 Score =  269 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 111/571 (19%), Positives = 219/571 (38%), Gaps = 82/571 (14%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            I +Q+ +     +SL +   + L   ++   +  +      +   Y  L+ +L+  D  
Sbjct: 8   KIKEQVAKSRTKISSLKKGTKIALGIGVIAICLALVFTAISASKNKYAVLFSELDAQDAA 67

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            IS  L    ID ++   GS+I VP + V K R+ LA      +  + G+ L D  +S G
Sbjct: 68  DISAELESKKIDTKVK--GSTIYVPRTEVDKLRLELAPS---LTGGSKGFALMDDSSSIG 122

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           LT    +I + R ++GEI +TI+S   +   RVHI   +   F K     +A+V +    
Sbjct: 123 LTDEEFQIKKQRMIQGEIEKTIKSFPQVEDTRVHITFGESSVFEKEAVPGSAAVYLMLKP 182

Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-------------I 226
            +  +    +++  L++ +V N+   +V V+D+   LL+   +E                
Sbjct: 183 GTTLEKNQIKSVMALISGSVTNIPEKNVQVIDNKMNLLSEGILEDENVDENNQPINSGIS 242

Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVER 286
           + K+ +  QA+  ++E +I + L    G    ++ V A+L+ DT +  EI  DPD    +
Sbjct: 243 VDKNKASEQALNKQLEKSILEMLEPIFGKGKVKATVNADLSFDTAEKTEIKIDPDKVAIK 302

Query: 287 SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346
             R SK++ +S  +  +            +             D  +E   YE       
Sbjct: 303 ETR-SKNSSKSAANNVQGV--------DANMNNQGNNNGTNTEDSLDESFEYETGKIETH 353

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
           T     +L RL+ +V ++      V              A++  IV+ A G++  RGDT+
Sbjct: 354 TIVAPGELNRLTASVAIDGKIAKGVQ-------------ADVEDIVNNAIGMDGARGDTL 400

Query: 407 TITSMDFLENQLFNSGTVQVSF-MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465
           ++ SM F       +         +   ++    +  +V ++    + +L          
Sbjct: 401 SVVSMVFDPEGKKEAKQELEEIKKEGFKKNIIKAVIGVVAVIAVGAIGYLIYKKR----- 455

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
                                         ++   +D  ++D  S S ++  + N  +  
Sbjct: 456 ------------------------------SEREDMDYEDEDYISKSDSVDRKDNPLLGD 485

Query: 526 QSDLRLLHMI----EINEERFAKILRKWARS 552
             +L L   +    E   ++  +I++ W   
Sbjct: 486 DPELTLEEAVKMYAEEKPDQVTEIIKTWLNE 516


>gi|255099415|ref|ZP_05328392.1| flagellar MS-ring protein [Clostridium difficile QCD-63q42]
          Length = 516

 Score =  269 bits (688), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 115/571 (20%), Positives = 222/571 (38%), Gaps = 82/571 (14%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            I +Q+ +     +SL +   + L   ++   +  +      +   Y  L+ +L+V D  
Sbjct: 8   KIKEQVAKSRTKISSLKKGTKIALGIGVIAICLALVFTAISASKNKYAVLFSELDVQDAA 67

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            IS  L    ID ++   GS+I VP + V K R+ LA      +S + G+ L D  +S G
Sbjct: 68  DISAELESKKIDTKVK--GSTIYVPRTEVDKLRLELAPS---LTSGSKGFALMDDSSSIG 122

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           LT    +I + R ++GEI +TI+S   +   RVHI   +   F K     +A+V +    
Sbjct: 123 LTDEEFQIKKQRMIQGEIEKTIKSFPQVEDTRVHITFGESSVFEKEAVPGSAAVYLMLKP 182

Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-------------I 226
            +  +    +++  L++ +V N+   +V V+D+   LL+   +E                
Sbjct: 183 GTTLEKNQIKSVMALISGSVTNIPEKNVQVIDNKMNLLSEGILEDENVNENNQPINSGIS 242

Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVER 286
           + K+ +  QA+  ++E +I + L    G    ++ V A+L+ DT +  EI  DPD    +
Sbjct: 243 VDKNKASEQALNKQLEKSILEILEPIFGKGKVKATVNADLSFDTAEKTEIKIDPDKVAIK 302

Query: 287 SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346
             R SK++ +S T+  +            +             D  +E   YE       
Sbjct: 303 ETR-SKNSSKSATNNVQGV--------DANMNNQGNNNGTNTEDSLDESFEYETGKIETH 353

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
           T     +L RL+ +V ++      V              A++  IV+ A G++  RGDT+
Sbjct: 354 TIVAPGELNRLTASVAIDGKIAKGVQ-------------ADVEDIVNNAIGMDGARGDTL 400

Query: 407 TITSMDFLENQLFNSGTVQVSF-MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465
           ++ SM F       +         +   ++    +  +V +V    + +L          
Sbjct: 401 SVVSMVFDPEGKKEAKQELEEIKKEGFKKNIIKAVIGVVAVVAIGAIGYLIYKKR----- 455

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
                                         ++   +D  ++D  S S ++  + N  +  
Sbjct: 456 ------------------------------SEREDMDYEDEDYISKSDSVDRKDNPLLGD 485

Query: 526 QSDLRLLHMI----EINEERFAKILRKWARS 552
             +L L   +    E   ++  +I++ W   
Sbjct: 486 DPELTLEEAVKMYAEEKPDQVTEIIKTWLNE 516


>gi|325926946|ref|ZP_08188226.1| flagellar basal-body M-ring protein/flagellar hook-basal body
           protein FliF [Xanthomonas perforans 91-118]
 gi|325542683|gb|EGD14145.1| flagellar basal-body M-ring protein/flagellar hook-basal body
           protein FliF [Xanthomonas perforans 91-118]
          Length = 687

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 78/330 (23%), Positives = 146/330 (44%), Gaps = 6/330 (1%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++  Q+F    SL  TR L + ++I + +   +A  F+   P Y +LY  L+       +
Sbjct: 15  EKAGQWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAA 74

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L  A I ++I     +ISVP   +  AR+ LA  GL    +  G+EL +K   FG++ 
Sbjct: 75  DLLRTAQIPYKIDQATGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQ 134

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           F++      ALE E++RTI ++  +  ARVH+ +P   +F +     +ASV++       
Sbjct: 135 FVENARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQG 194

Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240
            +    +AI +LVA+++P++    VTV+D +G++L+  +   +          V+  +  
Sbjct: 195 LERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESS 254

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I + L    G          +++    +    +Y+ +    RS ++S  +  +   
Sbjct: 255 YNQRIRELLEPMTGPGRVNPETSVDMDFSVVEEARELYNGEPAKLRSEQVSDTSTSATG- 313

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTD 330
            P+       N P           +LE T 
Sbjct: 314 -PQGPPGATSNSPGQPPAAGNQALNLEETQ 342


>gi|307718598|ref|YP_003874130.1| flagellar M-ring protein [Spirochaeta thermophila DSM 6192]
 gi|306532323|gb|ADN01857.1| flagellar M-ring protein [Spirochaeta thermophila DSM 6192]
          Length = 569

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 107/593 (18%), Positives = 210/593 (35%), Gaps = 71/593 (11%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKL--EVSD 59
            +L+++   +   + + +   +I  S+++V +   +       +P    L  K   +   
Sbjct: 7   NVLERVKNAWGKWSLVQK---IIFISIVMVLVGSLVFLASLSGAPSMVPLLNKAITDPQV 63

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
           +  I+  L E N+ ++++ +   +        + R  L  + L    ++  +ELFD +  
Sbjct: 64  LEDITTRLEEENVPYQVTADNRILVSDEKTARRMRAILVREDLVPRGTDP-WELFD-IER 121

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           + +T F + +   RA+   +   ++++  I  A V +V+P+   F +    P+AS++I  
Sbjct: 122 WTITDFERNVNLRRAITRTVEEHLKALDDIDDASVTLVLPEKALFAEDQEPPSASIIIVP 181

Query: 180 INPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-----ILGKS 230
              S      K  E I  LV  AV  LD  ++T+ D  G +L   E         +  + 
Sbjct: 182 KPGSDITSNRKKIEGIVKLVQFAVEGLDPENITITDQRGVVLNDFEGMEQFDRLELARRQ 241

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP--------- 280
           L   Q +++E +  I  ALA     D      +  EL+M   +++   + P         
Sbjct: 242 LKTKQELENEYKKRILSALATVFRPDRVEIVNLDIELDMSDVEVKTEEHFPITMKPDNPR 301

Query: 281 ----DSKVERSIRLSK----DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332
               +S+V  SI LSK    +        PE     E   P        L   +    + 
Sbjct: 302 TPYDESEVVPSITLSKEIQDEKFEGTGFNPEGPPGQEGQTPPAYKD---LEGLVGKYSRN 358

Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL------------TEVLGRSADQGK 380
               N  +NT++I    D ++++R+S+AV ++                 +   +      
Sbjct: 359 SVIQNEVVNTRNITERKDPWEIKRISVAVALDGVWKWEYNEKGEVVFNPDGSIKRTYLPV 418

Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440
            D  + +  +++ AA G    RGD IT+  + F     F              R     +
Sbjct: 419 SDEDIRKAEELIKAAVGYKRERGDLITVQHIQFDRTLQFAEEDAAFR----ARRQLERTV 474

Query: 441 NALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIA 500
              +  V  LLV F+    +                +          A     M    + 
Sbjct: 475 FYSLLGVAALLVAFIIFRLI------------AREMERRRRLKEEELARQHQAMREAALR 522

Query: 501 LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                      S   ++R+       +      M   + E  A+++R W   E
Sbjct: 523 SAEEEAAAVEMSVEERARMELQEQAIN------MAREHPEEVAQLIRTWLMEE 569


>gi|15615021|ref|NP_243324.1| flagellar MS-ring protein [Bacillus halodurans C-125]
 gi|10175078|dbj|BAB06177.1| flagellar basal-body M-ring protein [Bacillus halodurans C-125]
          Length = 525

 Score =  268 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 111/574 (19%), Positives = 222/574 (38%), Gaps = 81/574 (14%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
            D++ +++++ T   + + +++   +L+ I+L     FF    HY  LY  L + +   I
Sbjct: 9   RDRVTEYWRNRT---KKQQMVIVGAVLLIIILLAFLTFFSTRTHYVPLYSNLTLQETGNI 65

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    I   I+++G++I VP + V   ++ LAA+GLP S +   Y  F     FG+T
Sbjct: 66  KETLDARGISSEIANDGTTILVPETQVDALKVELAAEGLPQSGT-INYSTFRDSMGFGMT 124

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI-GARPTASVMIRAINP 182
                +    A+E E+A  I+S+ G+  A V I +P+   +        TASV++     
Sbjct: 125 DNEFSLMERAAIESELADLIRSVDGVNQANVMITLPEQTLWVSDSQQEATASVVVDLAPG 184

Query: 183 --SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSLSIVQ 235
                    A+ HLV+ +VPNL + ++ +++   +    ++        ++  +  +I +
Sbjct: 185 FQLDASQVRALYHLVSRSVPNLPIENIVIMNQMFEDYLYDDHHSTGSTLSVYEQQRAIQR 244

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-DSKVERSIRLSKDA 294
            I+ ++  N+ + L   +G D    +V  +++   +  +E   +P D +    I +S + 
Sbjct: 245 DIERDLTRNLQQMLGTLVGRDKVLVSVTTDIDFTQENRQEERVEPVDEENMEGIAVSVEN 304

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE-NTDKKEEQSNYEINTKSIATTHDNYK 353
                S   +     + +         +  + E + +  E++ NYE+N          YK
Sbjct: 305 ITETYSGEGTPEGGIEGVGDDIPNFPGVYGTGEVDYELTEDRINYEVNRIRSDIVESPYK 364

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKI----VSAATG-------INSRR 402
           +  L I V+V              +      LA+I +I    V  +          +   
Sbjct: 365 IRDLGIQVMV--------EPPEGMEELPADRLADIQQILGTVVRTSISGVYAAELTDDEF 416

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLL---VTFLGLHA 459
            + I ++S  F       +G               + +   V++VG +L   + FL +  
Sbjct: 417 NEKIFVSSQPFEGKADLETGA-------------GSSVPVWVYVVGGILLATIIFLIVLL 463

Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519
           +RR  + D+    + G  +   P        TG                           
Sbjct: 464 VRRRGDSDEDLMDDDGALTEEIPDLPQEEEGTG--------------------------- 496

Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                 Q   ++  M +   E F+K+LR W   +
Sbjct: 497 -----AQKRKQIERMAKERPEEFSKLLRTWLSED 525


>gi|315186389|gb|EFU20149.1| flagellar M-ring protein FliF [Spirochaeta thermophila DSM 6578]
          Length = 569

 Score =  268 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 106/593 (17%), Positives = 207/593 (34%), Gaps = 71/593 (11%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKL--EVSD 59
            +L+++   +   + + +   +I  S+++V +   +       +P    L  K   +   
Sbjct: 7   NVLERVKNAWGKWSLVQK---IIFISIVVVLVGSLVFLASLSGAPSMVPLLNKAITDPQV 63

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
           +  I+  L E N+ ++++ +   +        + R  L  + L    ++  +ELFD +  
Sbjct: 64  LEDITTRLEEENVPYQVTADNRILVSDEKTARRMRAILVREDLVPRGTDP-WELFD-IER 121

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           + +T F + +   RA+   +   ++++  I  A V +V+P+   F +    P+AS++I  
Sbjct: 122 WTITDFERNVNLRRAITRTVEEHLKALDDIDDASVTLVLPEKALFAEDQEPPSASIIIVP 181

Query: 180 INPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-----ILGKS 230
              S      K  E I  LV  AV  LD   +T+ D  G +L   E         +  + 
Sbjct: 182 KPGSDITSNRKKIEGIVKLVQFAVEGLDPDYITITDQRGVVLNDFEGMEQFDRLELARRQ 241

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP--------- 280
           L   Q +++E +  I  AL      D      +  EL+M   +++   + P         
Sbjct: 242 LKTKQELENEYKKRILSALGTVFRSDRVEIVNLDIELDMSDVEVKTEEHFPITMKPDNPR 301

Query: 281 ----DSKVERSIRLSK----DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332
               +S+V  SI LSK    +        PE     E   P        L   +    + 
Sbjct: 302 TPYDESEVVPSITLSKEIQDEKFEGTGFNPEGPPGQEGQTPPAYKD---LEGLVGKYSRN 358

Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL------------TEVLGRSADQGK 380
               N  +NT++I    D ++++R+S+AV ++                 +   +      
Sbjct: 359 SLIQNEVVNTRNITERKDPWEIKRISVAVALDGVWKWEYNEKGEVVFNPDGSIKRTYLPV 418

Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440
            D  L +  +++  A G    RGD IT+  + F     F              R     +
Sbjct: 419 SDEDLRKAEELIKGAVGYKRERGDLITVQHIQFDRTLQFAEEDAAFR----ARRQLERTV 474

Query: 441 NALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIA 500
              +  V  LLV F+    +                +          A     M    + 
Sbjct: 475 FYSLLGVAALLVAFIIFRLI------------AREMERRRRLKEEELARQHQAMREAALR 522

Query: 501 LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                      S   ++R+       +      M   + E  A+++R W   E
Sbjct: 523 SAEEEAAAVEMSVEERARMELQEQAIN------MAREHPEEVAQLIRTWLMEE 569


>gi|218512857|ref|ZP_03509697.1| flagellar MS-ring protein [Rhizobium etli 8C-3]
          Length = 316

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 167/316 (52%), Positives = 235/316 (74%), Gaps = 3/316 (0%)

Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL- 217
           P++G+FRK   +PTASVMIRA   +   +A +IRHLVA+AVP LD+ DVT+LDS G+LL 
Sbjct: 1   PEVGNFRKAEQKPTASVMIRASAATGRSAATSIRHLVASAVPGLDVDDVTILDSAGQLLA 60

Query: 218 TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
           + +E   + L +SL+IVQ +Q E+E NI+KALA FLG+DNFRS+V A+LN D QQI+E  
Sbjct: 61  SGDEASNSSLNRSLNIVQNVQQEVESNIDKALAPFLGMDNFRSSVTADLNTDAQQIQETT 120

Query: 278 YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSD--RKVPLPRSLENTDKKEEQ 335
           YDP+SKVERS+R +K+AQ+S+  Q ++A TVEQN+P  +        P S + +DK+EEQ
Sbjct: 121 YDPESKVERSVRSTKEAQQSQQKQSDNATTVEQNIPQAAPDAGGASGPESQDKSDKREEQ 180

Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395
           +NYEIN+++ ATT ++YK+E+LSIAVVVNKGR+ +++G  ADQ KID+YLAE+ KIV++A
Sbjct: 181 TNYEINSRTTATTRNSYKVEKLSIAVVVNKGRIAKMVGEPADQAKIDAYLAEMQKIVASA 240

Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455
            GI+++RGD +T+T+MDFLENQL    T  V  MD+LSR+ A +IN+L F+    +V ++
Sbjct: 241 AGIDAKRGDVVTVTAMDFLENQLLEDATGGVRVMDMLSRNLAGIINSLAFVAVAFVVVWM 300

Query: 456 GLHALRRLHNIDDAKK 471
           GL  L R  + + A  
Sbjct: 301 GLRPLVRSVSGNGASA 316


>gi|194014358|ref|ZP_03052975.1| flagellar M-ring protein FliF [Bacillus pumilus ATCC 7061]
 gi|194013384|gb|EDW22949.1| flagellar M-ring protein FliF [Bacillus pumilus ATCC 7061]
          Length = 525

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 100/563 (17%), Positives = 224/563 (39%), Gaps = 48/563 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M +  + ++F+++ + L   +IL++  V  + I++ +    F +S     L+  L  ++ 
Sbjct: 1   MQLRTKTVEFWRNRSKL--QKILMIGGVAALAIIITV-VSIFASSEKMVPLFRDLSEAEA 57

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +I   L   N+   +++NG++I VP       ++ LA++GLP +  N  Y  F   + F
Sbjct: 58  GQIKQELDGKNVKSELANNGTTILVPEKQADSLKVTLASEGLPKTG-NIDYSFFANNSGF 116

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRA 179
           GLT    ++ +V A + E++  I +I GI  ++V I +P    F  +  +  +AS++++ 
Sbjct: 117 GLTDNEFDVLKVDATQTELSNLINTIDGIKDSKVMINLPKDSVFVGEEQSNASASIVLQV 176

Query: 180 INPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIV 234
                   +  + + HL++ +VPNL   ++ ++D         ++++   + +       
Sbjct: 177 ERGYTLAPQQVKGLYHLISKSVPNLKTENIVIMDQDSNYYDLNSSSDSYASGMDAQQQKK 236

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-DSKVERSIRLSKD 293
           + I+  ++  I + L   +G +    +V  +++   ++ +E + +P D +  + I +S +
Sbjct: 237 EEIEKNLQRKIQQLLGTMMGQEKVAVSVTTDIDFTEEKRKEDLVEPVDKENMQGIAVSAE 296

Query: 294 ---AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
                 S             +    + +         + +K E++ NYE+N         
Sbjct: 297 KIAETYSGNGAAAGGTAGTGDDDVTNYQGADGANGSGDYEKSEDRINYEVNRIHKDIKES 356

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
            YK+  + I  +V      +V   +A+  + D     ++ I+S +       G  +T   
Sbjct: 357 PYKIRDVGIQALVEPPTANDVNSLTAE--RQDDIKKILSTIISTSIDKEYTNGQALTQAD 414

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           +   +N++  S +         + + +  I   V++VG                      
Sbjct: 415 L---DNKIVLSVSKLDGKQQTAAENPSNNIPIWVYIVG---------------------- 449

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
               G   +     I   V       +       +  I     + +      V K    +
Sbjct: 450 ----GVLLLAIIALIILLVRKRRKEEEEEFEFDEHTPIHVPDIDTEPETEEMVRK---NQ 502

Query: 531 LLHMIEINEERFAKILRKWARSE 553
           L  M +   E FAK+LR W   +
Sbjct: 503 LEKMAKDKPEDFAKLLRSWLSED 525


>gi|296330835|ref|ZP_06873310.1| flagellar MS-ring protein [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305674353|ref|YP_003866025.1| flagellar basal-body M-ring protein [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296151840|gb|EFG92714.1| flagellar MS-ring protein [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305412597|gb|ADM37716.1| flagellar basal-body M-ring protein [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 531

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 102/575 (17%), Positives = 225/575 (39%), Gaps = 66/575 (11%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M + ++  +F+K+ + L +   +++ S +   I++ +    F +S     LY  L   + 
Sbjct: 1   MQMKNKTSEFWKNRSKLQK---ILMISALAAIIIIGIIISVFASSSKMAPLYKDLSAEEA 57

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +I   L    +   +S+ G+ ISVP   V   ++ +AA+GLP + S   Y  F +   F
Sbjct: 58  GQIKEELDAKKVPNELSNGGTVISVPEDQVDSLKVQMAAEGLPKTGS-IDYSFFGQNAGF 116

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRA 179
           GLT    ++ +V+A + E++  I  + GI  ++V I +P    F  +  +  +AS++++ 
Sbjct: 117 GLTDNEFDMVKVKATQTELSNLINEMDGIKNSKVMINLPKDAVFVGEEQSAASASIVLQI 176

Query: 180 INPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ-- 235
                 +      + HLV+ +VPNL   ++ ++D        ++ +      S S  Q  
Sbjct: 177 QPGYTLEQSQINGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSDSDAGSYADSYSSQQGI 236

Query: 236 --AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP------DSKVERS 287
              ++ +I+ ++   L   +G D    +V A+++   +   E + +P      +     +
Sbjct: 237 KSQVEKDIQKHVQSLLGTMMGQDKVVVSVTADIDFTKENRTEDIVEPVDKENMEGIAVSA 296

Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
            ++S+  Q    +   +A T ++++ +             N +K   + NYE+N      
Sbjct: 297 EKVSETYQGDGAANGGTAGTGDEDVTNYEADGENTESG--NYEKSSNKINYEVNRIHKEI 354

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
               YK+  L I V+V           S +  + D     ++ +V  +   ++ +   ++
Sbjct: 355 AESPYKVRDLGIQVMVEPPDAKNTASLSTE--RQDDIQKILSTVVRTSLDKDATQNQNLS 412

Query: 408 ---------ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
                    ++   F      ++ T + S + + +     V+ A + ++  +LV      
Sbjct: 413 DEDINNKIVVSVQPFDGKVNLDTNTEKSSGIPLWAYIVGGVLIAAIIVLIIMLV------ 466

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
                                              +P + I L   N++    +  ++  
Sbjct: 467 -------------------RKKRAQEDEFEEYEYEVPQEPINLPDINEEENETAETVR-- 505

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                      +L  M +   E FAK+LR W   +
Sbjct: 506 ---------RKQLEKMAKDKPEDFAKLLRSWLAED 531


>gi|149182503|ref|ZP_01860976.1| flagellar M-ring protein [Bacillus sp. SG-1]
 gi|148849763|gb|EDL63940.1| flagellar M-ring protein [Bacillus sp. SG-1]
          Length = 529

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 109/572 (19%), Positives = 209/572 (36%), Gaps = 76/572 (13%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +QL  F+ + T   +    + A VI++ I +     F     +   LY  L  S+   I 
Sbjct: 11  EQLNTFWSARTKKQKGMYGVAALVIILAIAV---TGFLSTRTNLVPLYSNLAPSETGSIK 67

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L    I   I+D GS+I VPS MV   ++ LAA+G+P+S S   Y  F +   FG+T 
Sbjct: 68  ENLDGRGIVSEITDGGSTIMVPSEMVDTLKVELAAEGIPNSGS-IDYSFFSQNAGFGMTD 126

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG-ARPTASVMIRAINPS 183
               + ++ A++ E+A  ++ I G+  A V I +P+ G F      + +AS+++      
Sbjct: 127 NEFNVMKLDAMQTELANLMKGIEGVQDANVMITLPEKGVFISDAVEQASASIVLNTKPGF 186

Query: 184 --VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQAIQ 238
               K  +++ HLV+ +VP+L   ++ +++   +         +  G   + + I   ++
Sbjct: 187 NFDQKQIKSLYHLVSKSVPDLPTDNIVIMNQLFEYFEMENENSSFGGTVVQQMDIKDRVE 246

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD-----SKVERSIRLSKD 293
            +I+  +   L   +G +    +V  +++   +        P        +  S++   +
Sbjct: 247 KDIQKQVQSMLGTLIGFNKVVVSVTTDIDFTQENREVNEVTPVDAENMEGIAVSVQRITE 306

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
                  Q    V   ++        V    S  + ++ EE  N E+N          YK
Sbjct: 307 TFTG-NGQTAGGVPAAEDAGDGLGTYVEGENSNGDYERMEETINNEVNRIRREIVESPYK 365

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG---------D 404
           +  + I V+V           S  Q + +     ++ I+  +   +   G         D
Sbjct: 366 IRDIGIQVMVEPPD--PEDPNSFPQDRQEDISQILSTIIRTSI--DKEAGTELTPEAIED 421

Query: 405 TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH---ALR 461
            I ++   F     F   T                +    ++VG +L+  + L     +R
Sbjct: 422 KIVVSVQPFNGKMEFEQETPSA-------------LPWWTYVVGGILLAVIILLIFLMVR 468

Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521
           R   + + +      +  ++ P I +   T                              
Sbjct: 469 RNKTVVEEEVVYEERQQPVNIPDIDTEKET------------------------------ 498

Query: 522 YVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             S     +L  M     E FAK+LR W   E
Sbjct: 499 -ESSVRRKQLEKMAREKPEEFAKLLRSWLADE 529


>gi|313650158|gb|EFS14571.1| flagellar M-ring domain protein [Shigella flexneri 2a str. 2457T]
 gi|332757276|gb|EGJ87613.1| flagellar M-ring protein domain protein [Shigella flexneri 2747-71]
 gi|332757502|gb|EGJ87837.1| flagellar M-ring protein domain protein [Shigella flexneri K-671]
 gi|332766674|gb|EGJ96878.1| hypothetical protein SF293071_2322 [Shigella flexneri 2930-71]
 gi|333017624|gb|EGK36936.1| flagellar M-ring protein domain protein [Shigella flexneri K-304]
          Length = 259

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 77/258 (29%), Positives = 130/258 (50%), Gaps = 10/258 (3%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           + L++     +  +  +++  S     + + +A   +  +P Y  L+  L   D   I  
Sbjct: 9   KSLEWLNRLRANPKIPLIVTGS---AAVAVMVALILWAKAPDYRTLFSNLSDQDGGAIVS 65

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L++ NI +R S+   +I VP+  V + R  LA QGLP   +  G+EL D+   FG++ F
Sbjct: 66  QLTQMNIPYRFSEASGAIEVPADKVHELR--LAQQGLPKGGA-VGFELLDQE-KFGISQF 121

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
            +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +     
Sbjct: 122 SEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRAL 181

Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEIE 242
                 AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     ++  I+
Sbjct: 182 DEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEGRIQ 241

Query: 243 MNINKALAAFLGVDNFRS 260
             I   L+  +G  N  +
Sbjct: 242 QRIEAILSPIVGNGNIHA 259


>gi|229918627|ref|YP_002887273.1| flagellar MS-ring protein [Exiguobacterium sp. AT1b]
 gi|229470056|gb|ACQ71828.1| flagellar M-ring protein FliF [Exiguobacterium sp. AT1b]
          Length = 523

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 116/570 (20%), Positives = 219/570 (38%), Gaps = 66/570 (11%)

Query: 3   ILDQLLQFFKSGTS----LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           + +QL + FKS T     +   R L+    I V ++  +   FF++ P+   LY  L   
Sbjct: 1   MNEQLKERFKSMTDALKAMPAKRKLVWGISIAVILIAALVLTFFLSRPNMAPLYTNLSAQ 60

Query: 59  DVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
           +   ++  L+   +   I  + NG S+ VP+ MV + ++ LAA G+P S S   Y  F +
Sbjct: 61  EAGEVTEKLTADGVQSEIKATSNGVSVYVPTEMVDQLKVSLAAAGIPKSGS-IDYSFFSE 119

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASV 175
              FG T     +    A++ E+ R I  I GI  A+V I +P+   F  +    PTAS+
Sbjct: 120 NAGFGTTDREMAVIERSAMQTELERLITQIEGINQAKVIISLPEKSVFLAEDQGEPTASI 179

Query: 176 MIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSL 231
           ++     +  +  + + + HL++ +VPNL   +++++D        ++           L
Sbjct: 180 VLNIGAGTNLEPNTVKGLYHLISKSVPNLKPENISIMDQYFTYYDLDQTVVAGGSSSDPL 239

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD-----SKVER 286
           ++ + ++ ++   I + L+  LG  +   +V A+++       + +  P        +  
Sbjct: 240 ALKRQVEKDVRQQIQQMLSVLLGERSVLVSVTADIDTTQTAEEQNLVTPVDEENMEGIVT 299

Query: 287 SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346
           S     +A    T     A    +N     +         E ++K  E  NYE+N  +  
Sbjct: 300 SAERIAEAYTGGTGTATEATGTGEN--DTINFPAATGEGTEESEKNHEIINYEVNRITKQ 357

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVS---AATGINSRRG 403
             +  Y +  L + ++V        +    +        + I   ++    A   ++   
Sbjct: 358 IQNAPYTIRDLGVQLIVEPPDGATSIDPQLEGDLETMMYSIIRTSLAKTDEAI-TDAELE 416

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
             + + S  F E +   +      +    +   A V+ AL+F             A+RR 
Sbjct: 417 QKVVVVSRPFAEVEEVAATEQPTPWWMYAAAAGAVVLLALIF------------FAMRR- 463

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                 +K EV  ++     P    V                        +L+ R    V
Sbjct: 464 ------RKQEVVEETNEWEVPYEDEV---------------------PDLDLEERGEGAV 496

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSE 553
            K    +L  + E N E FAK+LR W   E
Sbjct: 497 KK---KQLEKLAESNPEEFAKLLRTWMSEE 523


>gi|83646781|ref|YP_435216.1| flagellar M-ring protein FliF [Hahella chejuensis KCTC 2396]
 gi|83634824|gb|ABC30791.1| flagellar M-ring protein FliF [Hahella chejuensis KCTC 2396]
          Length = 462

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 100/405 (24%), Positives = 176/405 (43%), Gaps = 37/405 (9%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
           F+   +  GR    +LA++I+V     +A    + S +Y  LY  L+     +++  L+E
Sbjct: 4   FWSEWSG-GRRVTFVLAALIVV--GAGVALYMMLTSHNYQVLYKDLDTEQAAKLTEKLNE 60

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
             I +++   GS + V    +  A++ LA+ G   +    G+ELFD+ + +G+T F Q+I
Sbjct: 61  LKIPYQLGAQGSQVLVSQDDLYNAKLKLASSGYALNGG-VGFELFDEAD-YGMTEFAQKI 118

Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYKS 187
              RAL+GE+ARTI +   I  ARVH+V+P+   F+K   +P ASV I   +        
Sbjct: 119 NYQRALQGELARTIMAFDEIKFARVHLVLPESSLFKKDNKQPKASVTIVMEDGKYLSLDQ 178

Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-GKSLSIVQAIQHEIEMNIN 246
              I++LVAA+V  L    VT+L+  G  LT  E          L    +++  ++  I 
Sbjct: 179 INGIQNLVAASVEGLKPETVTLLNHKGVALTQVETGDQATVSAQLKGKSSMEAFLQQKIV 238

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306
             L            V   LN    +       P    ++   +   A R          
Sbjct: 239 VILNQIFDEGTTAVRVDVALNHKRVERVRETLVPFGDTDKGAVIKSSANRQY-------- 290

Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
                +P    RK P   S+ ++D KEE+  Y    +    +    ++ER++++VV+   
Sbjct: 291 ----ELPDQDGRKKP--SSVISSDVKEEE--YAYGKQVETLSDAGGEVERITVSVVI--- 339

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
                             +  I  ++++A G++  RGD + + +M
Sbjct: 340 ----------PANASGEQIEVIKSLIASAIGLDFERGDLVNVAAM 374


>gi|295706285|ref|YP_003599360.1| flagellar M-ring protein FliF [Bacillus megaterium DSM 319]
 gi|294803944|gb|ADF41010.1| flagellar M-ring protein FliF [Bacillus megaterium DSM 319]
          Length = 530

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 104/570 (18%), Positives = 216/570 (37%), Gaps = 68/570 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
            D++  F+ +     +  ++      ++ I L   A  F+N   +  LY  L   +  +I
Sbjct: 9   RDKMKVFWNNRKKGQKIALIAAPLAAVLVISL---ASVFLNQDKFVPLYSNLSAQETGQI 65

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L   ++   ISDNG++ISVP   V   ++ LAAQG+P S S   Y  F K  SFG+T
Sbjct: 66  KAELDARSVPSEISDNGTTISVPEQSVDSLKVDLAAQGIPDSGS-IDYSFFGKNASFGMT 124

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA-RPTASVMIRAINP 182
                + ++ A++ E+A  +++I G+  A+V I +P+   +        +AS+++     
Sbjct: 125 DNEFNVLKLDAMQTELANLMKNIQGVNDAKVMITLPNESVWANEKQGEASASIVLNTKAG 184

Query: 183 S--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIV----QA 236
                +  +++ HLV+ +VPNL   ++ +++   +       E N    S +      + 
Sbjct: 185 YKFDDQQIKSLYHLVSKSVPNLPTDNIVIMNQYFEYFDLKGNETNSASSSFASQNEAKKE 244

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD-----SKVERSIRLS 291
           ++ +I+  + + L   +G D    +V A+L+   +   E + +P        +  S    
Sbjct: 245 VERDIQRQVQQMLGRLVGQDKVMVSVTADLDFTQENREEKLVEPVDKDNMQGIAVSAEKI 304

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
            +    E +Q        +     ++          + +K EE+ NYE+N          
Sbjct: 305 NETFSGENAQDGGVAGTGEE--DTTNYSSSTTSGDGDYEKNEERINYEVNRIHKEIVESP 362

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR--------G 403
           YK++ L I V+++       L  S         +  +  IV  +   ++           
Sbjct: 363 YKIQDLGIQVMIDPSNAKGKLQVSDTLESDVQKM--LGTIVRTSISKDANTKDLSDNAVS 420

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
           D IT++   F   +  ++    +             I     L+  +++  L +   R+ 
Sbjct: 421 DKITVSVQPFNGQETADNTASSIPLW--------MYITGGALLLIIVVLIVLLVRKRRQD 472

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
            + ++  +              + A++                                 
Sbjct: 473 LDEEEYNEEYDETFEAYEAAQKAPALSA-------------------------------- 500

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSE 553
            +Q+   L  + + + E FAK+LR W   +
Sbjct: 501 EQQTKTNLETLAKQDPEEFAKLLRTWISED 530


>gi|311030130|ref|ZP_07708220.1| flagellar MS-ring protein [Bacillus sp. m3-13]
          Length = 529

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 106/571 (18%), Positives = 211/571 (36%), Gaps = 70/571 (12%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           I  +   F+ S T   +T +L   S ++V I    A  +F+N      LY  L V +  +
Sbjct: 8   IKTKTFSFWTSRTKAQKTAML---STVIVSIFAIAAMVYFLNKTDMAPLYKDLTVQETGQ 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L    I  +I++NG++I VP   V   ++ LAA+GLP S S   Y  F + + FG+
Sbjct: 65  IKEVLDGRGIQSQITNNGTAILVPQQSVDSLKVELAAEGLPKSGS-IDYGFFGERSGFGM 123

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG-ARPTASVMIRAIN 181
           T     I ++ A++ E+A  ++SI G+  A+V + +P+ G F +      +AS++I    
Sbjct: 124 TDNEFRIMKLDAMQTELANLVKSIEGVKEAQVMLSLPEEGVFVRESTQEASASIVIENDP 183

Query: 182 PSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI----LGKSLSIVQ 235
              +      A+ HLV+ ++PNL   ++ +++   +    N  + +         L + +
Sbjct: 184 GYQFDQNHVNALYHLVSKSIPNLATDNIVIMNQNFEYFDLNNNQSSGNTFNASTQLELKK 243

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP------DSKVERSIR 289
            I+ +I+  + + L   +G +    +V  +++   +   E    P      +       R
Sbjct: 244 EIERDIQRQVQQMLGMMMGYNKVVVSVTTDIDFTQEAREENRVTPVDPENMEGIAVSVER 303

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
           +++    SE +      T E ++P              + +K EE+ N E+N        
Sbjct: 304 ITESYTGSEDTAGGVPGTGEADIPAYV---AGGGSGSGDYEKMEERINNEVNRIRSEIVE 360

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI-NKIVSAAT-----GINSR-- 401
             YK+  L I V+V      + L   + Q    + + +I + IV         G +    
Sbjct: 361 SPYKVRDLGIQVMVEPPVADDPL---SMQENTINDIRQILSTIVRTTIDKNMLGEDPELA 417

Query: 402 RGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461
             D   + S+     ++    + + +    +                             
Sbjct: 418 NIDEKIVVSVQEFNGKVEMEESTESTIPTWVY---------------------------- 449

Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521
            +          +    +             +   + +     + +    S +   R   
Sbjct: 450 -IAAGILLAVILLLLFLLFKRSSKEEEEEIMVTEEETVPFQVPDINNEKESESSARR--- 505

Query: 522 YVSKQSDLRLLHMIEINEERFAKILRKWARS 552
                   +L  M +   + FAK+LR W   
Sbjct: 506 -------KQLEKMAKEKPDEFAKLLRSWLSE 529


>gi|308173583|ref|YP_003920288.1| flagellar basal-body M-ring protein [Bacillus amyloliquefaciens DSM
           7]
 gi|307606447|emb|CBI42818.1| flagellar basal-body M-ring protein [Bacillus amyloliquefaciens DSM
           7]
          Length = 536

 Score =  263 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 80/404 (19%), Positives = 165/404 (40%), Gaps = 20/404 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M +  +   F+ + +   +T+ +++ S +   I+L +    F +S     LY  L   + 
Sbjct: 6   MQMKTKTSAFWNNRS---KTQKILMVSGLAAFIILLIVVIIFTSSEKMVPLYKDLSAEEA 62

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +I   L    +   ++D G+ I VP S V   ++ LAA+GLP + S   Y  F K   F
Sbjct: 63  GQIKEELDTKKVSSELADGGTVIMVPESQVDSLKVQLAAEGLPKTGS-IDYSFFGKNAGF 121

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRA 179
           GLT    ++ +V A + E++  I  + GI +++V I MP    F  +     +AS++++ 
Sbjct: 122 GLTDNEFDVLKVDATQTELSNLINEMDGIKSSKVMINMPKEAVFVGEDQPEASASIVLQI 181

Query: 180 INP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ-- 235
                        + HLV+ +VPNL   ++ ++D        ++     +  S +  Q  
Sbjct: 182 KPGYSLDQSQINGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSDSGAGSVSDSYASQQGI 241

Query: 236 --AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD-----SKVERSI 288
              ++ +I+ ++   L   +G D    +V A+++   ++  E + +P        +  S 
Sbjct: 242 KSQVEKDIQKHVQSLLGTMMGQDKVVVSVTADIDFTKEKRTEDIVEPVDKDNMEGIAISA 301

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
               +  + + +          N    +        +  + +K   + NYE+N       
Sbjct: 302 EKVAETYKGDGAANGGTAGTGSND-TANYAAANGGSNSGDYEKSSNKINYEVNRIHKEIA 360

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV 392
              YK+  L I V+V           ++   +  + + +I   V
Sbjct: 361 ESPYKVRDLGIQVMVEP---PNPKNAASLTAQRQADIQKILGTV 401


>gi|328553485|gb|AEB23977.1| flagellar MS-ring protein [Bacillus amyloliquefaciens TA208]
          Length = 531

 Score =  263 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 80/404 (19%), Positives = 165/404 (40%), Gaps = 20/404 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M +  +   F+ + +   +T+ +++ S +   I+L +    F +S     LY  L   + 
Sbjct: 1   MQMKTKTSAFWNNRS---KTQKILMVSGLAAFIILLIVVIIFTSSEKMVPLYKDLSAEEA 57

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +I   L    +   ++D G+ I VP S V   ++ LAA+GLP + S   Y  F K   F
Sbjct: 58  GQIKEELDTKKVSSELADGGTVIMVPESQVDSLKVQLAAEGLPKTGS-IDYSFFGKNAGF 116

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRA 179
           GLT    ++ +V A + E++  I  + GI +++V I MP    F  +     +AS++++ 
Sbjct: 117 GLTDNEFDVLKVDATQTELSNLINEMDGIKSSKVMINMPKEAVFVGEDQPEASASIVLQI 176

Query: 180 INP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ-- 235
                        + HLV+ +VPNL   ++ ++D        ++     +  S +  Q  
Sbjct: 177 KPGYSLDQSQINGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSDSGAGSVSDSYASQQGI 236

Query: 236 --AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD-----SKVERSI 288
              ++ +I+ ++   L   +G D    +V A+++   ++  E + +P        +  S 
Sbjct: 237 KSQVEKDIQKHVQSLLGTMMGQDKVVVSVTADIDFTKEKRTEDIVEPVDKDNMEGIAISA 296

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
               +  + + +          N    +        +  + +K   + NYE+N       
Sbjct: 297 EKVAETYKGDGAANGGTAGTGSND-TANYAAANGGSNSGDYEKSSNKINYEVNRIHKEIA 355

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV 392
              YK+  L I V+V           ++   +  + + +I   V
Sbjct: 356 ESPYKVRDLGIQVMVEP---PNPKNAASLTAQRQADIQKILGTV 396


>gi|319649567|ref|ZP_08003723.1| flagellar M-ring protein [Bacillus sp. 2_A_57_CT2]
 gi|317398729|gb|EFV79411.1| flagellar M-ring protein [Bacillus sp. 2_A_57_CT2]
          Length = 533

 Score =  263 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 103/572 (18%), Positives = 205/572 (35%), Gaps = 69/572 (12%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           + ++ +++ S T   +T   ++     + I+L  AA F         LY  L  S+   I
Sbjct: 9   IGKVKEYWSSRTKKQKT---VMIGAAAICILLIAAAAFLSTRTTLVPLYSNLTPSETGTI 65

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
             +L    +   I+D G++I VP   V   ++ LAA+G+P S S   Y  F +    G+T
Sbjct: 66  KESLDTRGVVSEIADGGTTIKVPEEAVDSLKVELAAEGIPKSGS-IDYSFFSQNAGIGMT 124

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI-GARPTASVMIRAINP 182
                + ++ A++ E+A  ++ I G+  A+V I +P+ G F        +AS+++     
Sbjct: 125 ENEFNVLKLEAMQTELANLMKGIDGVNDAKVMINLPEKGIFVNDSSEEASASIVLNTKPG 184

Query: 183 SVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQA 236
             ++    +A+ HL A ++PNL   ++ + +   +        N    +       I + 
Sbjct: 185 YQFEESQIQALYHLAAKSIPNLPTDNIVITNQFFEYFDLKNKQNSSSESTFAAQHEIKKE 244

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP------DSKVERSIRL 290
           I+ +++  +   L   +G D    +V A+++   +   E +  P      +     + ++
Sbjct: 245 IERDVQRQVQNMLGTLMGQDKVVVSVTADIDFTQENREENLVTPVDEENMEGIAISAQKI 304

Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
           ++    +      +      + P  +D  V    S  + ++ EE  N E+N         
Sbjct: 305 TETFTGNGEGAGGTPALGGNDEPAGTDSYVATGDSSGDYERIEETINNEVNKIRREIVES 364

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG---------INSR 401
            YK+  L I V+V     T     S  Q +I+     +  +V               +  
Sbjct: 365 PYKVRDLGIQVMVEPP--TADDPASLPQERINDITQILGTVVRTTINKDAAADAELTDEA 422

Query: 402 RGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461
             D I ++   F     F + T             +T I   ++ +G             
Sbjct: 423 IQDKIVVSVQPFNGKVEFTNET-------------STRIPWWIYAIGG------------ 457

Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521
                            I+                +      + +       N +    S
Sbjct: 458 -------------VLLLIIVLLIFLFVKARKRQKQEEEMEVQTAETFNLPDVNEEHETES 504

Query: 522 YVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
            V +    +L  M +   E FAK+LR W   +
Sbjct: 505 TVRR---KQLEKMAKEKPEDFAKLLRTWIAED 533


>gi|56964034|ref|YP_175765.1| flagellar MS-ring protein [Bacillus clausii KSM-K16]
 gi|56910277|dbj|BAD64804.1| flagellar M-ring protein FliF [Bacillus clausii KSM-K16]
          Length = 527

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 116/566 (20%), Positives = 227/566 (40%), Gaps = 59/566 (10%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
              +Q+  F+   ++L ++ ++ +  ++L+ I L  A  F     +Y  LY +L +++  
Sbjct: 7   QFKNQVQTFWTESSTLRKSAVISVVLLLLLAIALAAALLF---RTNYAPLYSQLTLAEAG 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           +I  AL +  +  R+S++G++I VP + V + ++ LAA+GLP S S   Y  F     FG
Sbjct: 64  QIQEALEQRGVAARVSNDGTTIHVPEADVDRLKVDLAAEGLPKSGS-IDYAFFQNQMGFG 122

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           +T     +     ++ E+A  I+ + G+  A V I +P+   +   G   + + ++  + 
Sbjct: 123 MTDNEFTVIERSLMQTELAELIRGVQGVEQANVIITLPEESVWLNSGQESSTAAVVLQLE 182

Query: 182 PSVYK---SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQ 235
           P         +A+ HL++ +VPNL + ++ + DS     T  E E +          I Q
Sbjct: 183 PGYTLDSSQVKALYHLISKSVPNLPIENIVLSDSQFNNYTYQEEETSPAASFQSQREIKQ 242

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIRL 290
            I+ +++  IN+ L+A +G +N   +V A+++   +Q  E + +P      S +  S+  
Sbjct: 243 EIESDLKQTINQLLSAVVGPENAIVSVTADIDFTQEQRTEDLVEPVDEEEVSGLAISVER 302

Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
             +     T   E    V   +P+ +            +++ EE+ NYE+N         
Sbjct: 303 INEMYEGTTGNEEGVAGVGDEIPNYTGAAGGGD---SESERTEERINYEVNRIHKEIIES 359

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR---GDTIT 407
            Y++  L I V+VN     + L        I + L  I +      G        GD + 
Sbjct: 360 PYEIRDLGIQVMVNPPEGMQALP-PQQTADITAMLETIIRTTLPDDGEEEGEQDVGDRVV 418

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           +TSM F + +   +               +  I   ++ V   LV    L  +  +    
Sbjct: 419 VTSMPFAQTETGEAEQPS-----------SATIPVWIYAVAAGLVL---LIIILAVLLYR 464

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
             +  ++  +   +  P        LM  +                            + 
Sbjct: 465 KREPADLAEEQDEAAEPEPEQEDEPLMETEET-----------------------EESKQ 501

Query: 528 DLRLLHMIEINEERFAKILRKWARSE 553
             +L  + +   E F+K+LR W   E
Sbjct: 502 MRQLNRLAKEQPEDFSKLLRTWLSDE 527


>gi|154686037|ref|YP_001421198.1| flagellar MS-ring protein [Bacillus amyloliquefaciens FZB42]
 gi|154351888|gb|ABS73967.1| FliF [Bacillus amyloliquefaciens FZB42]
          Length = 536

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 99/574 (17%), Positives = 201/574 (35%), Gaps = 64/574 (11%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M +  +   F+ + +   +T+ +++ S +   I+L +    F +S     LY  L   + 
Sbjct: 6   MQMKTKTAAFWNNRS---KTQKILMVSGLAAFIILLIVVIIFTSSEKMVPLYKDLSAEEA 62

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +I   L    +   ++D G+ I VP S V   ++ LAA+GLP + S   Y  F +   F
Sbjct: 63  GKIKEELDTKKVSSELADGGTVIKVPESQVDSLKVQLAAEGLPKTGS-IDYSFFGQNAGF 121

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRA 179
           GLT    ++ +V A + E++  I  + GI +++V I MP    F        +AS++++ 
Sbjct: 122 GLTDNEFDVLKVEATQTELSNLINEMDGIKSSKVMINMPKEAVFVGEDQPAASASIVLQM 181

Query: 180 INP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME----RNILGKSLSI 233
                        + HLV+ +VPNL   ++ ++D        ++       +       I
Sbjct: 182 KPGYSLDQNQINGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSDSGAGSVSDSYASQQGI 241

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD-----SKVERSI 288
              ++ +I+ ++   L   +G D    +V A+++   ++  E   +P        +  S 
Sbjct: 242 KSQVEKDIQKHVQSLLGTMMGQDKVVVSVTADVDFTKEKRTEDTVEPVDKDNMEGIAVSA 301

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
               +  + + +          N    +  +     +  + +K   + NYE+N       
Sbjct: 302 EKVAETYKGDGAANGGTAGTGSND-TANYAETNGGSNSGDYEKSSNKINYEVNRIHKEIA 360

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT- 407
              YK+  L I V+V           SA +      +  +  +V  +   N  +   +T 
Sbjct: 361 ESPYKVRDLGIQVMVEPPNPKNAASLSAQRQADIQKI--LGTVVRTSLDKNETQNQNLTD 418

Query: 408 --------ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA 459
                   ++   F      N+ + Q S + I       V                    
Sbjct: 419 NDINNKIVVSVQPFDGKTSLNTDSAQSSGLPIWVYITGGV-------------------- 458

Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519
                 +       +                    P + + L   N++       ++   
Sbjct: 459 -----LLAAIILLIILLIRKKRSQEDEYEEYEYETPPEPVRLPDINEEKIETEETVR--- 510

Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                     +L  M +   E FAK+LR W   +
Sbjct: 511 --------RKQLEKMAKEKPEDFAKLLRSWLDED 536


>gi|294500939|ref|YP_003564639.1| flagellar M-ring protein FliF [Bacillus megaterium QM B1551]
 gi|294350876|gb|ADE71205.1| flagellar M-ring protein FliF [Bacillus megaterium QM B1551]
          Length = 530

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 106/571 (18%), Positives = 220/571 (38%), Gaps = 70/571 (12%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
            D++  F+ +     +  ++      ++ I L   A  F+N   +  LY  L   +  +I
Sbjct: 9   RDKMKVFWNNRKKGQKIALIAAPLAAILVISL---ASVFLNQDKFVPLYSNLSAQETGQI 65

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L   ++   ISDNG++ISVP   V   ++ LAAQG+P S S   Y  F K  SFG+T
Sbjct: 66  KAELDARSVPSEISDNGTTISVPEQSVDSLKVDLAAQGIPDSGS-IDYSFFGKNASFGMT 124

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA-RPTASVMIRAINP 182
               ++ ++ A++ E+A  +++I G+  A+V I +P+   +        +AS+++     
Sbjct: 125 DNEFDVLKLDAMQTELANLMKNIQGVNDAKVMITLPNESVWANEKQGEASASIVLNTKAG 184

Query: 183 S--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL----SIVQA 236
                +  +++ HLV+ +VPNL   ++ +++   +       E N    S      + + 
Sbjct: 185 YKFDDQQIKSLYHLVSKSVPNLPTDNIVIMNQYFEYFDLKGNETNSASSSFASQNEVKKE 244

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD-----SKVERSIRLS 291
           ++ +I+  + + L   +G D    +V A+L+   +   E + +P        +  S    
Sbjct: 245 VERDIQRQVQQMLGRLVGQDKVMVSVTADLDFTQENREEKLVEPVDKDNMQGIAVSAEKI 304

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
            +    + +Q        +     ++          + +K EE+ NYE+N          
Sbjct: 305 NETFSGKNAQDGGVAGAGEE--DTTNYSSSTTSGDGDYEKNEERINYEVNRIHKEIVESP 362

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE-INKIVSAATGINSRR-------- 402
           YK++ L I V+++    +   G+S     ++S + + +  IV  +   ++          
Sbjct: 363 YKIQDLGIQVMIDP---SNAKGKSQVSDTLESDVQKMLGTIVRTSISKDANTKALSDNAV 419

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
            D IT++   F   +  ++    +                 ++++G              
Sbjct: 420 SDKITVSVQPFNGQETADNTASSIPLW--------------MYIIG-------------- 451

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
                       G   ++    I   +       D    D    + F      Q      
Sbjct: 452 ------------GALLLIIVVLIVLLIRKRRQDLDEEEYDEEYDETFEAYEAAQKAPVLS 499

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             +Q+   L  + + + E FAK+LR W   +
Sbjct: 500 AEQQTKSNLETLAKQDPEEFAKLLRTWISED 530


>gi|329896193|ref|ZP_08271387.1| Flagellar M-ring protein fliF [gamma proteobacterium IMCC3088]
 gi|328921936|gb|EGG29302.1| Flagellar M-ring protein fliF [gamma proteobacterium IMCC3088]
          Length = 640

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 118/575 (20%), Positives = 219/575 (38%), Gaps = 53/575 (9%)

Query: 26  ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISV 85
           A  +L+ ++LF+     +NS  Y ++   +   D      AL  +    RI+     I V
Sbjct: 70  AISVLLAVLLFVIFGSMLNSTGYRSISNGMSEPDRQASYDALLASQYKVRINPASGMIEV 129

Query: 86  PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145
           P     +A++ LA+QGLP S+   GY   ++  S   + FM+++    A+E E+A+TI  
Sbjct: 130 PDGSYQQAKLFLASQGLPRSAIAGGYSALNENASMTQSQFMEQVQYNNAMELELAKTISQ 189

Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS--VYKSAEAIRHLVAAAVPNLD 203
           I  I +ARVHI +     F +      ASV+++            ++I HLV+++VP + 
Sbjct: 190 IDSIESARVHIAVNKQSVFVRERMPSKASVVVKPYFGRVVTQPQVQSIIHLVSSSVPYMS 249

Query: 204 MGDVTVLDSTG-KLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAV 262
             DVTV+D+ G  L + +  +     K++   + ++ E+   I   +   LG  N +S V
Sbjct: 250 TTDVTVVDNYGILLSSDSSDDSLGTQKNIDFERRMEAELSGRIVDLIMPVLGEGNVKSIV 309

Query: 263 VAELNMDTQQIREIVYD--PDSKVERSIRLSKDAQRSE--TSQPESAVTVEQNMPH--VS 316
             +++    +     +D        RS  LS D    +     P     +  + P    +
Sbjct: 310 NVDVDFTETESTFEEFDRSGTGPKTRSEVLSNDEVIGQAAAGIPGGVSNIAPDAPELEAT 369

Query: 317 DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA 376
                    LE T + +   NYE++           ++  L+ A+++N+  L +++    
Sbjct: 370 GAAAGAGAGLETTQRTQTTRNYELDKAVRYVKEQPGRVLGLTAAIMLNESALRDLVLIKL 429

Query: 377 DQG---------------------------------------KIDSYLAEINKIVSAATG 397
            Q                                        ++D  +     +V  A  
Sbjct: 430 RQAAGTTSNSTPLEGRLAPDSAGDVNATSVGLEEFSEQQINEQMDIEIERFRGLVIRALP 489

Query: 398 INSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457
            +  RGD+I I +  F  +      T      + +          + FL   LLV    +
Sbjct: 490 FDDVRGDSINIAAAPFYIDAPIEIITPW-WEQEGIVEWGKHGFTVIAFLFLLLLVVRPIM 548

Query: 458 HALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS 517
                  ++DD        K     P    A+  G    +  A     +   S S ++  
Sbjct: 549 AFYMPKPSVDDLAVLAEKMKDGELTPAELEALEKGETLEEIKAKLKPKK--SSISADMLD 606

Query: 518 RINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
             N+Y  K + +RL  ++  +  R A +L+K  + 
Sbjct: 607 TANTYDDKVALIRL--LVAEDSGRVANVLKKMIKP 639


>gi|158320512|ref|YP_001513019.1| flagellar M-ring protein FliF [Alkaliphilus oremlandii OhILAs]
 gi|158140711|gb|ABW19023.1| flagellar M-ring protein FliF [Alkaliphilus oremlandii OhILAs]
          Length = 515

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 108/564 (19%), Positives = 213/564 (37%), Gaps = 67/564 (11%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            I +QL ++F+    + + + ++LAS  +  ++      ++ + P Y  LY  L      
Sbjct: 7   QIRNQLNEYFQG---MDKKKKIMLASGTIFILLALTGIIYYFSRPEYVELYSNLRPEQTG 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L+E NI  +       I VP     +A++ +A +GLPS+  +  +E     NSF 
Sbjct: 64  EIIERLTENNIKAKFGQTSGIILVPKEDQKRAQVVVATEGLPSAKFS--FEDVFSGNSFM 121

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARPTASVMIRA 179
           +TS  +    V AL+  +A  I+ I+G+ +A V +V+P+   F          ASV +  
Sbjct: 122 MTSEEKSKQYVYALQNYLASIIEEINGVKSANVALVVPENSGFILKNNNNLAKASVRLDL 181

Query: 180 INPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIV 234
              ++    S   I  LV+ AV  L   +VT+  S G++L  +  E +       +L++ 
Sbjct: 182 QGNAILDKNSINGIAILVSNAVEGLSPENVTIHGSDGRVLNTDSDEDSDVFASNNNLALQ 241

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD-----SKVERSIR 289
           Q+++ ++E +I   L+   G  N       +L+ D++      + P      + + RS++
Sbjct: 242 QSVKEKLEESITNFLSNVYGYGNIVVMANVKLDFDSEVTEIKEFAPPIEGETTGIPRSLQ 301

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
                  +  +          +      + V          +     NYEIN        
Sbjct: 302 ELSKESVNGGTGGAPGTPTNADDDTDPAQYVVGDEEYSTYSEASRTINYEINELYKKIVK 361

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
              +++ +++AV VN   L       AD         ++  I+SAA G++++    + + 
Sbjct: 362 AQGQVKDITVAVFVNSAAL-------ADGDLTAEQRTDLANIISAAAGLDTK---VVQVG 411

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
              F    +    ++  +    L      +I          LV    L A  R  N + A
Sbjct: 412 VQQFNNGAMEPGDSLAGTSSSSLPLWAIGMI-------AVALVGITYLIASSRAKNKNKA 464

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
            +            P+   +    +   ++ L  S                     Q   
Sbjct: 465 ME------------PLEEMIIPETIAEIDLELSGS---------------------QVKQ 491

Query: 530 RLLHMIEINEERFAKILRKWARSE 553
           ++  ++    E  A++L+ W   +
Sbjct: 492 QIEKLVSKKPEAVAQLLKNWLNED 515


>gi|304404244|ref|ZP_07385906.1| flagellar M-ring protein FliF [Paenibacillus curdlanolyticus YK9]
 gi|304347222|gb|EFM13054.1| flagellar M-ring protein FliF [Paenibacillus curdlanolyticus YK9]
          Length = 527

 Score =  259 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 106/570 (18%), Positives = 216/570 (37%), Gaps = 71/570 (12%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
            D+L Q++   +  G+ + + L   +   I+  +   +  +   Y+  +  L+ +D   +
Sbjct: 9   RDRLSQWW---SQTGKKQKIWLGGTLGFLILAIILLTYIFSRTDYEIAFQNLDTTDSAAV 65

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L  + I +++S +G SI VPS++  + +I + +QGL  + S          + +G T
Sbjct: 66  MTYLDSSGIKYQLSSDGKSILVPSAVASRVKIDVGSQGLVRNGSIGFDSFNQNSSQWGTT 125

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRAINP 182
                +    AL GE+ + + ++ G+ +++V + +P    F  +      AS+ ++  N 
Sbjct: 126 DNEFNVKYRNALNGEVQQLLNNMQGVESSKVLVTLPQESVFADREEEHAIASITLKFTNG 185

Query: 183 SVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS------LSIV 234
                   +    LV  AVPNL + D+T+  + G+L+++        G +        I 
Sbjct: 186 YRPSQKEVDGYFKLVKTAVPNLAIDDITIASTEGELVSSEAGGSPANGGTEVADQLFQIQ 245

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP------DSKVERSI 288
           +  + E++ NI + L+  +G  N    + + LN D +   + + +P         V    
Sbjct: 246 RKYETELKKNIQQYLSTMIGEGNVAVYIASSLNFDQKTSEQNLVEPIANNNNKGVVLSEQ 305

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
             SK +  ++++      + E ++P  +        S E T       NYEIN       
Sbjct: 306 ETSKTSTNTDSAVGGVPGSGETDVPGYTAANGAGNSSNEETSS---IRNYEINRIKNIVE 362

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT--- 405
              + ++ L+I++ VN+  L         Q +I +Y+ +I +   A +G++    D+   
Sbjct: 363 SSPFMIKDLNISIGVNRASLQGEA-----QTQITNYVKQILRTQLAQSGLDVT-SDSVVS 416

Query: 406 --ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
             +T+ + DF             S    LS  +   I      +       +     R  
Sbjct: 417 QRVTVMAQDFAAGGA-------GSESSKLSTAWMAGIGIAALALIAGFAIGMMRKRKR-- 467

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                                   A        D + ++    D+ S + + Q R N   
Sbjct: 468 --------------------NAEIAAAEAAAAADPVRVEFPTLDLDSGANDHQVRKN--- 504

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSE 553
                  L  + +   E F  +LR W   E
Sbjct: 505 -------LETLAKRKPEEFVNLLRTWLVDE 527


>gi|167465322|ref|ZP_02330411.1| flagellar MS-ring protein [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 425

 Score =  259 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 85/417 (20%), Positives = 192/417 (46%), Gaps = 16/417 (3%)

Query: 3   ILDQLLQFF----KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           + +++ Q++    +      +   + L +  +  I+      + ++   Y   +  L+ +
Sbjct: 1   MNEKIGQYWGRVKQYWNKYSKKTKITLIAAAVFMILTVGIISYNLSKTEYSTAFTNLQPN 60

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
               I   L +  I +++S +G SI VP++ V + +I + ++GL     N GY +FD+  
Sbjct: 61  AAADIKAYLDQEKIPYKLSADGKSIGVPTAQVAEVKIAVESKGLNKGG-NVGYGIFDQSG 119

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMI 177
           SFG T    E+ ++ A++GE+ + I S   I  ++V I +P+ G F  K   + +ASV++
Sbjct: 120 SFGTTDNQFEMQKLNAMQGELQQLINSNQAIANSKVLINIPEQGVFLSKNEEKASASVVL 179

Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK-----S 230
                        + I +LV+ +V NL + ++T+ D  G+ +  ++ + +  G       
Sbjct: 180 EVKQGYTLDQNQIDTIYNLVSHSVKNLPLDNITIADQFGQYMVPSKADGSPQGSTQVANQ 239

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD-PDSKVERSIR 289
             + +  + +++ NI   LA   G +     VV+ +N D ++ +E +   P+   ++ + 
Sbjct: 240 FQVKKQFESDMQRNIVNLLAPMYGQNKVVVNVVSTMNFDQKKTKEQLVSAPNQDEQKGLE 299

Query: 290 LS-KDAQRSETSQPESAVTVE-QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
           +S ++ Q+S +S   +A  V       V   +         +++ ++  NYE+N  +   
Sbjct: 300 ISVQELQKSASSDGATAGGVAGSGTNDVPGYESTSNSGNSKSEENQKTVNYEVNRITNDI 359

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD 404
               Y ++ L+I V ++   +    G+  +   +++ +  I K   A +G+   + D
Sbjct: 360 IRAPYVVKDLNITVAIDTKSVNGNPGKIENAELLENAMKGIVKTALADSGVEYEQAD 416


>gi|296274027|ref|YP_003656658.1| flagellar M-ring protein FliF [Arcobacter nitrofigilis DSM 7299]
 gi|296098201|gb|ADG94151.1| flagellar M-ring protein FliF [Arcobacter nitrofigilis DSM 7299]
          Length = 580

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 120/558 (21%), Positives = 241/558 (43%), Gaps = 36/558 (6%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIM---LFMAARFFVNSPHYDNLYVKLEVSDV 60
           +DQLL+F  +  S  R  I+   S++LV ++   ++   +   +  +Y  +   L  + V
Sbjct: 1   MDQLLKFVNNLNSAQRAVIIGGFSLLLVLLLGLLIYSNVKAEDSKLNY-TIATNLTKNQV 59

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSM--VGKARIHLAAQGLPSSSSNSGYELFDKVN 118
              S  L  + I F +  +G+S+++ +S   +  A+I L      ++S + G+E+F+K +
Sbjct: 60  MLASNELEASGILFSVVGSGNSLTLKTSKEFINIAKIKLVTSD-AATSKHVGWEIFEK-S 117

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178
           S G T+F  ++  +RALEGE++R+++S+SGI+ A V + +P    F +    PTAS ++ 
Sbjct: 118 SLGTTNFENKVKYLRALEGELSRSLESLSGILRASVKLAIPKETIFTERKTPPTASAVLT 177

Query: 179 AINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK--SLSIV 234
                    K  + I++ +A+A+PNL   ++ ++D  G +L  ++ E + L         
Sbjct: 178 LKPGVYLTQKQIDGIKNFIASAIPNLTTNNIKLIDQDGSILEQSKEEADNLSSVTQNKYK 237

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
           + ++ + E  I   L  F+G     + V   LN   +  +E +Y+P+  + RS + ++  
Sbjct: 238 KRLEKDFESKIVDLLEPFVGKGRVVARVSLSLNFSKKHTQEEIYEPEGTI-RSQQTTEST 296

Query: 295 QRSETSQPESA--VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
             S+    ++A    V+ N+      +     +    +  +   NYEI+ + I     NY
Sbjct: 297 SSSDGVVKDTAAVPGVQSNI-QAPQPEGNKGTNSSKNETSKNIVNYEISKRVIDHEDKNY 355

Query: 353 -KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
             + +++ AV  +   LT V  +       D ++  I ++V    G + +RGD IT+   
Sbjct: 356 STINKITAAVTFDSAALTNVQNK-------DEFINNIVEVVQDTIGYDEKRGDKITVKDF 408

Query: 412 DFLE-NQLFNSGTVQVSFMDILSRHFATVINALV-------FLVGTLLVTFLGLHALRR- 462
            F+  +   N        ++        V   L        +L+  +L+       + + 
Sbjct: 409 KFVTYDNKANLDANGNPIVEDSGDTIGMVKAILAEFSEYFQYLIALILLFIFYRKFIVKN 468

Query: 463 ---LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519
              + +      G                VT      D   LDS+   + S  R+     
Sbjct: 469 DVVILSDGLTSSGTGKAGGGKGKDINIPGVTDDTKLEDEFNLDSAKGRLKSKVRSQILNN 528

Query: 520 NSYVSKQSDLRLLHMIEI 537
              + ++S  +   +IE 
Sbjct: 529 LEGLDEESAAKYEVLIEE 546


>gi|205373372|ref|ZP_03226176.1| flagellar MS-ring protein [Bacillus coahuilensis m4-4]
          Length = 504

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 96/542 (17%), Positives = 204/542 (37%), Gaps = 51/542 (9%)

Query: 25  LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSIS 84
           +  V+L+ I+L +A  FF        LY  L  ++   I  +L    I   IS+ G++I 
Sbjct: 1   MGIVVLLTILLIVAVTFFSTRTALVPLYSNLSPAETGSIKESLDSKGITSEISEGGTTIL 60

Query: 85  VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144
           VP+ MV   ++ LA++GLP + S   Y  F +   FG+T     + ++ A++ E+A  I+
Sbjct: 61  VPTEMVDTLKVQLASEGLPKTGS-IDYSFFSQNAGFGMTDNEFNVLKLDAMQTELALLIK 119

Query: 145 SISGIVAARVHIVMPDMGSFRKIG-ARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPN 201
           SI G+  A V I +P+ G F      + +AS++++      ++ ++   + +LV+ +VPN
Sbjct: 120 SIEGVQDASVMISLPEQGIFVNDQTQQASASIVLQTQPGYQFEQSQISGLYNLVSKSVPN 179

Query: 202 LDMGDVTVLDSTGKLLTANEMERNILG----KSLSIVQAIQHEIEMNINKALAAFLGVDN 257
           L   ++ +++   +      +  +         + + + I+ +I+  +   L   +G + 
Sbjct: 180 LPTDNIVIMNQFFEYFELENVNNSSFAGNISSQMDVKKQIERDIQQQVQSMLGTLIGFNK 239

Query: 258 FRSAVVAELNMDTQQIREIVYDPD-----SKVERSIRLSKDAQRSETSQPESAVTVEQNM 312
              +V  +++   +   E +  P        +  S +   +    E +     V   ++ 
Sbjct: 240 VVVSVSTDIDFTQEAREENLVVPVDEENLEGITMSAQRITETFTGEGANAAGGVPAGEDP 299

Query: 313 PHVSDRK-VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV 371
                   V       + ++ EE  NYE++          YK+  + I V+V      + 
Sbjct: 300 ADSLGTTYVGSTDGDGDYERIEETMNYEVSRVMKEIVESPYKVRDIGIQVMVEPPTPDDP 359

Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDI 431
                +     + +  ++ I+  +   +         ++ D     +     V V+  + 
Sbjct: 360 TSLPLETQDDITQI--LSTIIRTSI--DKE-------SNPDLTPEAIEQKVVVSVAEFNG 408

Query: 432 LSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTT 491
                +T I A+ + V  +                       +    I+     +     
Sbjct: 409 KQEFTSTNIPAIPWWVYVI--------------GGILLAVIILLIFMIVRSRKNNIEEEL 454

Query: 492 GLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWAR 551
                  I++   N++  S +                 +L  M     E FAK+LR W  
Sbjct: 455 EYEEPVRISIPDVNEEKESET------------TVRKKQLEKMARDKPEEFAKLLRTWMT 502

Query: 552 SE 553
            E
Sbjct: 503 EE 504


>gi|332981431|ref|YP_004462872.1| flagellar M-ring protein FliF [Mahella australiensis 50-1 BON]
 gi|332699109|gb|AEE96050.1| flagellar M-ring protein FliF [Mahella australiensis 50-1 BON]
          Length = 533

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 115/574 (20%), Positives = 232/574 (40%), Gaps = 71/574 (12%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            +  QL +F++  T   + RI+I A +I+  I +  A         Y  LY  L++ +  
Sbjct: 9   NMRKQLNEFWQGLTPSQKNRIIIAAVLIIAGIAVTGAIW---GRRQYTVLYSGLDIKEAG 65

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I+  L E  + +R +  G++I VP     K R+ LA QG+P +  N  Y+LF + ++FG
Sbjct: 66  EITQKLDEMGVPWRTAAGGTAIEVPKGQDAKIRMQLATQGIPKTGGN--YDLFMQSSAFG 123

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARPTASVMIRA 179
            T + ++   +   +  +  +I +I G+  A V+I +P+  SF         TASV+++ 
Sbjct: 124 TTDYKEQKLYIFQQQERLQESIMTIQGVDQAVVNISVPEKDSFVLKNDVQPATASVLLKL 183

Query: 180 INPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQ 235
                 KSA+   I+ LVA +V  L   +VTV+D    +L+  + E +I    + + + +
Sbjct: 184 SPGVEMKSAQVSGIQQLVAKSVIGLKSENVTVIDDKANILSVEQKEDDIRTADQQVDLEK 243

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSK 292
            +Q E++  + + L    G       V  +L+ D +    I + P   D  +  S++  K
Sbjct: 244 KVQDELQQKLLQLLEPIFGPKKVVVGVGVQLDFDKRSSESIQWQPVLDDEGIAVSMQTIK 303

Query: 293 DAQ-------------RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYE 339
           ++                  +  +    VE +  +  D      +     +K+E   NYE
Sbjct: 304 ESMINMPAGEVPGTANNGADTGGQGPPPVEDDTGNNPDGYPGTNQGNSEYNKEENTINYE 363

Query: 340 INTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN 399
           +N           KL+ ++I+VVV+   ++E + +                  + A GI+
Sbjct: 364 VNQLKQQVEEAQGKLKSMTISVVVDGENISEQVRQQVQSVV------------AGAAGID 411

Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA 459
           ++    + + +M F    L       ++      +   ++ N ++ L+   +       A
Sbjct: 412 AQ---YVIVQAMPFSVASLQEDINNALN-ASQQQKQADSMRNIILGLITAAVAGAAAFIA 467

Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519
           +R  +    A + E                    M    I    S ++I     +  ++I
Sbjct: 468 VRVANGRRGAVEPE--------------------MVEAGIPEGVSIEEIPMEPEDEHTKI 507

Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                     ++  +++   +  A++LR W   +
Sbjct: 508 --------KQQIEKLVDQKPDVVAQLLRTWLNED 533


>gi|171321207|ref|ZP_02910177.1| flagellar M-ring protein FliF [Burkholderia ambifaria MEX-5]
 gi|171093517|gb|EDT38687.1| flagellar M-ring protein FliF [Burkholderia ambifaria MEX-5]
          Length = 495

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 99/410 (24%), Positives = 172/410 (41%), Gaps = 39/410 (9%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +   + +      +  R R   LA  +   +     A +    P Y  L   L+  D   
Sbjct: 1   MKRSISRLGAYFLAGSRARQFALAGTLTAVVGCAGLAAWLALRPSYQILARDLKPQDAAA 60

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           ++  L +  I FR  ++ ++I VP++    AR+ L +  L      +G+ELF++ + FGL
Sbjct: 61  VAAQLDKEKIPFRYDESTAAILVPANDARAARVRLTSADLRLQGV-AGFELFNQ-SDFGL 118

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T F Q++   RAL+GE+ARTI ++  I  ARVH+ +P+   FR+   RP ASV +   + 
Sbjct: 119 TEFAQKVNYQRALQGELARTIATLDAIELARVHLSLPEASLFRRDRGRPKASVALFVRDG 178

Query: 183 SVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240
              +    + I+ LVAAAVP +   DV+VL+ +G   +A+    ++     ++  A++  
Sbjct: 179 HALEPDVVKGIQRLVAAAVPEMSAADVSVLNQSGA--SADARGADVDDPKFALKNAVEQR 236

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
            E  I   +A   G      +V A L+ D  +         S + +S         +   
Sbjct: 237 YEHKILAQIAPIAGAGRATVSVDASLDFDQIRTTRE-----SGLTQSA--------ANPG 283

Query: 301 QPESAVT--VEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
            P  A T       P+     +P  R+      + E +  E              + +LS
Sbjct: 284 NPPGAPTHSATAGWPNAGLPPLPGARTAPI---EPETARSE--RSVEQIVRSPGAIRKLS 338

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
           + +V++                       +  IVSA+ G +  RGDT+ I
Sbjct: 339 VGIVLDDTM-------------TPERATRLRDIVSASIGFDPARGDTLAI 375


>gi|330809237|ref|YP_004353699.1| flagellar M-ring protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377345|gb|AEA68695.1| Putative Flagellar M-ring protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 458

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 99/414 (23%), Positives = 189/414 (45%), Gaps = 49/414 (11%)

Query: 18  GRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS 77
           GRTR+ ++ +  L+ + L  A+ ++V  P Y  LY   + +   +I   LS+ ++ +RI+
Sbjct: 12  GRTRVFLIGA--LLIVGLLAASAWWVLRPQYVALYRNADEASQAQILATLSQRHVPYRIN 69

Query: 78  DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137
               +I V +     AR++LA  G+P+    +G+ELFDK + +G++ F Q+I   RA+EG
Sbjct: 70  TQQGAIEVLADHAASARMYLAEAGIPTRGG-TGFELFDKAD-YGMSEFSQKINYQRAMEG 127

Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLV 195
           E+ARTI S+S +  ARVH+       +++    P ASV++R  +      +    I+ LV
Sbjct: 128 ELARTIMSMSEVEYARVHLTFKKTSLYQQAEEPPKASVIVRLRSAGTLMPQRVRGIQQLV 187

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255
           ++AV  + +  V+VL+  G++L+A++       + L +   ++  +++   + LA  LG 
Sbjct: 188 SSAVEGMTLERVSVLNEDGQVLSASD-GAAAAPEHLQLTAQVEQVLKLKAEELLARPLGH 246

Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV 315
                +V   +N D  +       P +   R  + ++  + S                  
Sbjct: 247 RGVDVSVRVLMNFDRVKSISEQ--PLTNKMRREKRTESTENS------------------ 286

Query: 316 SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS 375
                    S     +   + +YE+      T H   K+ER+++ VV+            
Sbjct: 287 ------NGESTSKRSQNNREIDYEVGKARAETEHAAGKIERITVGVVL------------ 328

Query: 376 ADQGKIDSYLAEINKIVSAATGINSRRGDTITIT---SMDFLENQLFNSGTVQV 426
                 D+ + +I  ++ AA G++ +RGD + +     M   E       +VQ 
Sbjct: 329 -STPVSDAQMKDIQALLEAALGLDLKRGDRLVMVYIPDMPVPETTPVAEPSVQP 381


>gi|296282266|ref|ZP_06860264.1| flagellar M-ring protein FliF [Citromicrobium bathyomarinum JL354]
          Length = 526

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 97/415 (23%), Positives = 182/415 (43%), Gaps = 21/415 (5%)

Query: 29  ILVPIMLFMAARFFVN-SPH-YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVP 86
            +    L +AA  +   +P     LY  L+ +    +   L +A ID++I++N  ++SV 
Sbjct: 32  FVGMAGLGIAALLWATLAPGPQRVLYSSLDDASRASVVATLDQAGIDYQINNNTGALSVS 91

Query: 87  SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146
            S + +AR+ +A+ G   ++  +G ++ + +   G +  ++      A E E+  T+Q I
Sbjct: 92  ESDLYRARMVVASNG-SIAAPETGAQMIENL-PLGASRTLEGDRLRAAQERELMLTVQEI 149

Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDM 204
            G+ + RVHI   +   F +    P+AS+M+R             AI +LVA +VP L  
Sbjct: 150 DGVESVRVHIAKAERSVFVRENVAPSASIMVRMAPGRELADSQVSAIVNLVAGSVPGLSP 209

Query: 205 GDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVA 264
             V V+D  GKLLT  +       + L +   ++ ++   +++ L+  +G D F S V  
Sbjct: 210 DAVRVVDQHGKLLT--DKREGAGNERLDLQTQMEAKLTAQVDQLLSPMIGADAFSSQVQV 267

Query: 265 ELNMDTQQIREIVYDPDSKVER-SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRK---V 320
           EL+M+        YD D  + R + + S  +Q      P +        P ++DR     
Sbjct: 268 ELDMNEVTSARESYDKDGAIRRETTQQSSTSQAPAAGIPGATANTPPADPQLADRAPQDT 327

Query: 321 PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380
           P     +          YE+  +   +      L+R+S+AV ++K  +            
Sbjct: 328 PPADGAQTMGDTSASRTYELGREVSVSNLTPGALKRVSVAVAIDKNAMANA--------- 378

Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435
             + + +I ++VSAA G    RGD +T+    F E  +      +  +  ++ R+
Sbjct: 379 NAADIKKIEELVSAAVGAQDARGDKVTVMIRPFTEAVVDKPAFYETGWFAMVVRN 433


>gi|149184178|ref|ZP_01862496.1| flagellar M-ring protein FliF [Erythrobacter sp. SD-21]
 gi|148831498|gb|EDL49931.1| flagellar M-ring protein FliF [Erythrobacter sp. SD-21]
          Length = 517

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 98/536 (18%), Positives = 197/536 (36%), Gaps = 35/536 (6%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
           +  +S  +    R        +  + L       ++      LY  L  ++   +   L 
Sbjct: 4   ERLRSFAAQSAVRKAAPWFAGVAGMGLLALTWAALSPAPQRVLYSSLGDAERASVVTTLD 63

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
           +A I + I  +  +++V    V +AR+ +A+ G  ++               G +  ++ 
Sbjct: 64  KAGISYTIDSSTGALTVGEDDVYRARMLVASDGSLAAPETG--SDLIASLPMGASRTLEG 121

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-- 186
                A E E+  TI  I G+ A RVHI   +   F +    P+AS+M+R          
Sbjct: 122 DRLRAAQERELTMTIMEIVGVEAVRVHIAKAERSVFVREDVAPSASIMVRLARGRQLTDG 181

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246
              AI +LVA +VP L +  V V+D  GKLLT     R+     + +   ++ ++   ++
Sbjct: 182 QVVAITNLVAGSVPGLSIDAVKVVDQHGKLLTQ---ARDPHSGRIDLQAQMEAKLNSQVS 238

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVER-SIRLSKDAQRSETSQPE-- 303
           + L    G   F + V  EL+M+        YD D  V R + + S+ +  +    P   
Sbjct: 239 QLLTPMFGAGAFTAQVQVELDMNEVTSARESYDKDGTVRRETTQQSQSSDVTAGGIPGVL 298

Query: 304 -SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
            +    E      +        +     +      YE+  + + +      ++ LS+AV 
Sbjct: 299 ANTPPAEGEARQGAPNDTQQGNTAGGIGESSATRVYELGREVLVSNLSPGSVKYLSVAVA 358

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           +++  L +            + + ++ ++V+AA G    RGD +T+    F + +     
Sbjct: 359 IDQAALAKA---------SAADINKVKELVTAAVGAREDRGDKVTVVMRPFEKIEAEEVP 409

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482
             + S+  +  R+   ++  L+ L+  +      L  +               G S  + 
Sbjct: 410 FYETSWFAMAVRNGVAILAVLLVLLLAVRPAIKALRGM---------------GVSDKTA 454

Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
                 V   +   D     S N++       L  R+       + L L  ++  +
Sbjct: 455 GSSGEGVALPIPTYDIEGTTSLNRETLDGQIELAQRVARENPDDAVLALRRLLAED 510


>gi|126653749|ref|ZP_01725667.1| flagellar M-ring protein [Bacillus sp. B14905]
 gi|126589713|gb|EAZ83849.1| flagellar M-ring protein [Bacillus sp. B14905]
          Length = 531

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 99/570 (17%), Positives = 214/570 (37%), Gaps = 63/570 (11%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            I +   QF+KS +   + + +++   ++  I L     FF +   Y  LY  L   ++ 
Sbjct: 7   KIKNDTSQFWKSRS---KKQKIVMVGSLVGVIALAAIVTFFASKTTYVPLYKDLSTREIG 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           ++  AL    + ++I+  G+SI VP   V    + LA++G P + +   Y  F   + FG
Sbjct: 64  QVKEALDSQGVTYQIAPGGTSILVPEEQVDSLLVQLASEGYPQTGT-IDYS-FANSSGFG 121

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI-GARPTASVMIRAI 180
           +T     + +  A E EIA+  +++ G+  A+V I +P+ G F        TAS+++   
Sbjct: 122 MTDNEFNLLKKAATETEIAKLFRNLEGVKDAKVMITVPEEGVFVTDVKEDATASIVLNTD 181

Query: 181 NPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-----TANEMERNILGKSLSI 233
                  +    + +LV+ ++PNL   ++ + +   +       T +          L +
Sbjct: 182 PGYKFTEQQITTMYNLVSKSIPNLKTENIVISNQFSEYFDLNAATTDGTSTATAEGQLQM 241

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP------DSKVERS 287
            + ++ +++  +   L   +G D    +V  +++   +   E +  P      +     +
Sbjct: 242 KKLVERDLQRQVQNMLGTLMGQDKVMVSVTTDIDFKKENREENLVTPVDEENMEGIAISA 301

Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
            R+++    +  +        E    + +        +  + ++ EE  N ++N      
Sbjct: 302 QRITEQYSGTGAAAATGTPEAETTTDNFTTYNEGTSGNG-DYERTEETINNDVNRIRKDI 360

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLG-RSADQGKIDSYLAEINKIVSA---ATGINSRRG 403
               YK++ + I V+V     T+        +  I+  L+ I +   +   A  +   + 
Sbjct: 361 QEAPYKVQDIGIQVIVEPPTATDAASLPDGVREDIEKILSTIVRTTISKDVAAELTQEQI 420

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
           D     S+     Q       QV+    +   +  VI  ++  V  LL  F+     R  
Sbjct: 421 DEKVAVSV-----QPLYGKATQVADEKPMIPWWVWVIGGILLAVIVLLAFFIIRSRKR-- 473

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                                      + L   +++ +D  N++I +             
Sbjct: 474 --------------------AQEEEELSILEEQEDLMIDDINEEIETE------------ 501

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSE 553
           +     +L  M +   + FAK+LR W   +
Sbjct: 502 ATMRRKQLEKMAKDKPDDFAKLLRSWIAED 531


>gi|254436608|ref|ZP_05050102.1| flagellar M-ring protein FliF [Octadecabacter antarcticus 307]
 gi|198252054|gb|EDY76368.1| flagellar M-ring protein FliF [Octadecabacter antarcticus 307]
          Length = 602

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 103/568 (18%), Positives = 215/568 (37%), Gaps = 61/568 (10%)

Query: 44  NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP 103
            +P    L+  L  ++   +  AL    +D +I      I+VP +    +R+ LAAQGLP
Sbjct: 37  QAPQRTTLFASLPEAEKAAVMDALRNNGMDVQIDSTTGDITVPVADYHSSRMSLAAQGLP 96

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
            S  + GY +       G +  ++ +   ++ E E+AR+I  I+ I A+RVH+ +P+  +
Sbjct: 97  QSMPD-GYSVL-SDMPMGTSRSVENMRLKQSQEIELARSINEINVISASRVHLAIPERSA 154

Query: 164 FRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-- 219
           F +    PTASV ++         +   AI +LV+++V NL    VTV+D  G+LL+   
Sbjct: 155 FARNAQNPTASVFLQVQAGRSLSEQQVMAIVNLVSSSVANLPRTSVTVVDQNGRLLSDTV 214

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
           ++   ++  + L     ++      +   L   +G  N  + V  +++    +  E +  
Sbjct: 215 DDPATDLADRQLEYRLRLEEIYRARVENLLTPIVGPGNVSAQVSLDIDFTQTERTEDLVI 274

Query: 280 PDSKVERSIRL--SKDAQRSETSQPESAVTVEQNMPH----------------------- 314
           P  +   S ++   +D        P +        P                        
Sbjct: 275 P-GRALLSEQVALEEDVIAQMGGIPGAVANTPPPRPELDGAPPADGAAPPADGAAPPADG 333

Query: 315 ------------------VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
                                    L              NYEI+    A +    ++  
Sbjct: 334 AAPPADGAAPPADGAAPPADGNGQGLASEESRVRSTNSLRNYEISRSITAQSSPMAQIVS 393

Query: 357 LSIAVVVNKGR-----LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
           + +AV++ +       L          G   +++ ++  +VS   GI+  RGDT+ ++S+
Sbjct: 394 VQVAVLLREQPSAVEGLDAEDSIPPQVGFDPAWIDDVRGLVSRTVGIDESRGDTLIVSSL 453

Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471
            F+  +   S   +    D L      V  A+  ++  +++  + L  ++ L     +  
Sbjct: 454 PFISTEAVFSSMSEN--TDFLWYEDPWVREAVRNVLMVMVLAVVTLGLIKPLLMQFLSAP 511

Query: 472 GE---VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
           GE   + G +  +   + + +    M       D   +     +      +++  S    
Sbjct: 512 GEGMMMPGNTGTAGGGVLTDMDVIEMEEGQTLEDIKAKLKPKKTTISAEMLDTANSYDDK 571

Query: 529 LRLLHMIEINE-ERFAKILRKWARSEIE 555
           + L+ MI  +E  R + + + +   +++
Sbjct: 572 VALIRMIVSDEAGRVSNVFKAFMEDDMD 599


>gi|116327841|ref|YP_797561.1| flagellar MS-ring protein [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116330717|ref|YP_800435.1| flagellar MS-ring protein [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116120585|gb|ABJ78628.1| Endoflagellar biosynthesis/type III secretory pathway protein
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116124406|gb|ABJ75677.1| Endoflagellar biosynthesis/type III secretory pathway protein
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
          Length = 566

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 115/591 (19%), Positives = 218/591 (36%), Gaps = 67/591 (11%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            IL+ + +FF   T+L  T+ LIL  V L  ++            +   L+  L   D  
Sbjct: 7   KILNNIREFF---TTLDTTKKLILGGVALTVLVAIGILSTISLQKNRVVLFKDLTSKDFA 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            ++  L      +  S + S I+V      +    LA + L  +    G+ELF  V+ F 
Sbjct: 64  EVTKKLDSLGYQYG-SSDTSVITVDPEQRQEIVTKLAQENLIPAGVQ-GWELF-NVDKFT 120

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
            T F ++I + RAL+G I +++ ++  +  A V+I  P+   F    +   ASV++  I 
Sbjct: 121 ETQFDKDIKKYRALKGAIEQSLMTLRSVDKAYVNIAFPEDELFSSNSSPVKASVILHYIP 180

Query: 182 P---SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI- 237
                  K  + I +LV+ AVP L   +V+V D+ GK+++  E +       L IVQ   
Sbjct: 181 GVESLSRKEVKGIVNLVSRAVPKLKPENVSVADADGKIISDFEEDLEKERLELRIVQEKL 240

Query: 238 ----QHEIEMNI--NKALAAFLGVDNFRSAVVAE--LNMDTQQIREIVYDPDSKVE---- 285
               +  I+  I     L   LG ++       E  LN D +  ++    P   +     
Sbjct: 241 RIGEEQRIQRLIDMRNTLRWLLGGEDRVDITRFEYNLNWDKESYKDNSVSPVVAIPDNPN 300

Query: 286 ---------------RSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD 330
                           S + +K+  +     P+     E N+P                 
Sbjct: 301 TPYSELKLVDGYSLKVSSKETKEDFKGRGFTPDGPAGTEPNIPPGYKDTD---YQKSEYS 357

Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA-----DQGKIDSYL 385
           K E  +NYE N +        +K+E+++++VV++     +                +  L
Sbjct: 358 KSENINNYEFNRRVSEVQKQPWKVEKVNLSVVIDGMWEKKEKEDGTGYDRKYIPVSEDEL 417

Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445
            +I K + +A GI+  RGD I++ ++    +  F +   ++     + +     +  ++ 
Sbjct: 418 RQIRKNLESAVGIDKARGDQISVITIPKDRSSQFAAEDEELRKQKAIRQMIIASLVIIL- 476

Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505
               L+V+ L   A+++        + E            +  V         ++LD   
Sbjct: 477 ---LLIVSILVYRAIKKEIARRRRLREEELAAQQQMMREAALRVMDEGGAEVELSLDEKY 533

Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIED 556
           +     +                    ++     E  A++LR W   E   
Sbjct: 534 RRELLENAI------------------NLAREKPEEVAQLLRTWLSEEEAS 566


>gi|254499113|ref|ZP_05111803.1| truncated flagellar M-ring protein FliF [Legionella drancourtii
           LLAP12]
 gi|254351652|gb|EET10497.1| truncated flagellar M-ring protein FliF [Legionella drancourtii
           LLAP12]
          Length = 403

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 103/429 (24%), Positives = 190/429 (44%), Gaps = 57/429 (13%)

Query: 52  YVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGY 111
           +  L+  D N++   L + NI +++   G  I +   +V K R+ +   GL  +  N G+
Sbjct: 2   FSHLDEQDANKVLSQLEQENISYQVRHGGQDILIDKDLVAKTRLKIMGSGLQLAG-NVGF 60

Query: 112 ELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARP 171
           ELFDK N FG+T F Q+I   RAL+GE+ RTI S   I  ARVH+V+P+   F     +P
Sbjct: 61  ELFDK-NDFGMTDFSQKINYQRALQGELERTISSFDEIRQARVHLVIPETHLFDHEENQP 119

Query: 172 TASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL 231
            A++ +        +   +I+ LVAA+V +L + +V V+D  G  L+    E ++     
Sbjct: 120 KAAITLHLKQALTNQQVRSIQQLVAASVAHLSLKNVVVVDQNGNTLSQ--TEEDLSSTHF 177

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
           +  + I+H +   + + L      +     + AE+N D  +++  +  P +K +  I   
Sbjct: 178 ASKKNIEHYLNDKVTQMLHKIFAKNQVMVKINAEINYD--ELQRELIKPQTKGQ--ITHE 233

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           K+ + S         TV++      ++ + L ++            YE  ++       +
Sbjct: 234 KEIKHS---------TVDKKGKQKGNQDLTLEKT------------YEFGSEKELFKRAS 272

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
             +ERLSI+VV+              Q      +A++ +++    G N +RGD I++ ++
Sbjct: 273 GTIERLSISVVI-------------PQYTDAKTIAQVQRLIKNTVGFNEKRGDVISVEAL 319

Query: 412 ----DFL--ENQLFNSGTVQV----SFMDILSRHF-----ATVINALVFLVGTLLVTFLG 456
                F         + T Q     SF + +  ++        I AL+F +       L 
Sbjct: 320 IAQPVFSTKRPSPILNATPQTAMTISFWETMHTYWDKDKQWQAILALLFFIALSSSGALV 379

Query: 457 LHALRRLHN 465
           L ++R+   
Sbjct: 380 LRSIRQKKR 388


>gi|331005448|ref|ZP_08328827.1| Flagellar M-ring protein fliF [gamma proteobacterium IMCC1989]
 gi|330420724|gb|EGG95011.1| Flagellar M-ring protein fliF [gamma proteobacterium IMCC1989]
          Length = 469

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 95/437 (21%), Positives = 171/437 (39%), Gaps = 45/437 (10%)

Query: 14  GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73
                +   +ILA V ++ +++      +  + +Y +L+V LE  D   I   L     +
Sbjct: 2   LNGFSKQSKIILAVVSIILLIILGFTAQWALNKNYQSLFVGLEPKDSAAIVQQLDALKAE 61

Query: 74  FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
           +RI+    ++ VPSS V   R+ L    +  S    GYE+FD  + FG+T F Q I   R
Sbjct: 62  YRINKETGNVEVPSSQVHSTRLQLMGTDVTISGG-VGYEIFD-NSDFGMTEFAQRINYQR 119

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEAI 191
           ALEGE+ RTI S+S +  +RVH+V+P+   FR+   +P+ASV +               I
Sbjct: 120 ALEGELQRTITSLSQVKKSRVHLVLPERSLFRENKEQPSASVTLIVKKGMSLTGTQISGI 179

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK---SLSIVQAIQHEIEMNINKA 248
           + LV+++V  L    V + D  G  L+       I       L   + I+  +   +++ 
Sbjct: 180 QRLVSSSVSGLKEPMVIINDQQGVTLSQEIPADEIAQAIPWRLKQKKDIESYLTEKVSRV 239

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308
           L       +   ++   ++ +  +  E    P ++ +   R  +           +   V
Sbjct: 240 LRYAFKDGDIAVSIDVIIDFNYTKKMEEKVIPLAEGKAISREKESFIGGNKKTKNNNSNV 299

Query: 309 EQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368
                                    +++ YE+      TT    K+++LSI +++     
Sbjct: 300 T------------------------KETEYEMGRSVAETTESPGKIQQLSIGIIL----- 330

Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI-TSMDFLENQLFNSGTVQVS 427
                    +   ++   E+ ++V    G N  RGD I I TS+   E +          
Sbjct: 331 --------TKFLSENDKQELQRLVETTVGFNENRGDHIAIYTSLAIPETKEMGDKPALSV 382

Query: 428 FMDILSRHFATVINALV 444
               L  H   +    V
Sbjct: 383 QPKTLDDHLPPIKKVQV 399


>gi|310641543|ref|YP_003946301.1| flagellar m-ring protein flif [Paenibacillus polymyxa SC2]
 gi|309246493|gb|ADO56060.1| Flagellar M-ring protein FliF [Paenibacillus polymyxa SC2]
          Length = 527

 Score =  253 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 102/564 (18%), Positives = 222/564 (39%), Gaps = 59/564 (10%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
            D++  ++ + +   + + ++L S +   I+  +          Y+  +  L  +D   +
Sbjct: 9   RDKISGYWNNFS---KKQKILLVSTLAFIIIAIVVLTMQFTKTEYEVAFQDLNANDAAGV 65

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L  A I ++++  G+ ISVP++   KA++ + +QGL    S          ++ G+T
Sbjct: 66  IKYLDSAGIPYQLNAGGTQISVPTANADKAKVDVGSQGLIQKGSIGMSAFDQSSSAIGMT 125

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARPTASVMIRAIN 181
                +    AL GE+ + ++ + G+ +++  I MP    F   +   + +ASV +    
Sbjct: 126 ENEFNVKYNNALNGEVQQLLERMDGVQSSKAVINMPKENIFAGLEEKDKASASVQMEFEP 185

Query: 182 PSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN----ILGKSLSIVQ 235
                    +   +LV  AVPNL + ++T+ +   +L+   +  +      + +++++ +
Sbjct: 186 GFTPNQQAIDGYFNLVKTAVPNLPVENITITNKEYELIPTAKGGQGGLTSGVQENMALQK 245

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK-----VERSIRL 290
             + ++  N+ + L+  +G D     V+++LN D    +E +  P  +     +E S + 
Sbjct: 246 KFESDVRNNVQQFLSKIVGDDKVNVLVMSQLNFDKVTSKEQMVTPVDQTKMKGIEISAQQ 305

Query: 291 SKDAQRSETSQPES-AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
            +++    + Q    A T  Q++P           S   +DK     NYE+N  +     
Sbjct: 306 IQESYTGSSGQTGGVAGTGTQDVPGYPGGANSGNTS---SDKSSSTINYEVNRIARDIIQ 362

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
             Y ++ L+I V V      + L  +A Q  I + L  I +   A +G      D     
Sbjct: 363 SPYTVKDLTINVAVEPPTGQQTLD-TATQTAIQNILVNIVRASLANSGTTFTDADLAKKV 421

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
           S+ F  +Q   + T   +F    S  +   I A V  +   ++ F+         +  + 
Sbjct: 422 SV-F--SQAAPAPTSTNTFFS-ASNPWMWGIGAAVLALLAGVIFFIVR-------SRRNQ 470

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
           ++       ++  P    ++T   + N++                           Q   
Sbjct: 471 EEELDEELQLMPTPTEFPSITMESVTNES---------------------------QVRK 503

Query: 530 RLLHMIEINEERFAKILRKWARSE 553
           +L  + +   + F  +LR W   E
Sbjct: 504 QLESLAKKKPDEFVNLLRTWLADE 527


>gi|302338077|ref|YP_003803283.1| flagellar M-ring protein FliF [Spirochaeta smaragdinae DSM 11293]
 gi|301635262|gb|ADK80689.1| flagellar M-ring protein FliF [Spirochaeta smaragdinae DSM 11293]
          Length = 569

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 109/592 (18%), Positives = 228/592 (38%), Gaps = 73/592 (12%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVK-LEVSDV-N 61
           +DQL   +   + + +   LILA+V++V ++  +       +P    L    +   D  +
Sbjct: 9   IDQLKALWGKWSMVQK---LILAAVVVVAVVGIVLMLHVSATPSMVPLITAPITDQDKLD 65

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIH-LAAQGLPSSSSNSGYELFDKVNSF 120
           +ISV L E  ++  I+  G  I VP     +  +  LA + L  + ++  +++F K++ +
Sbjct: 66  KISVRLDEEGVEHTITAEG-LILVPDKRTAQRMVSILAREDLIPADTSP-WDIF-KMDRW 122

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
            LT F + +   RA+   + + I+++  +  A+V +V+P+   F++     TASV+I   
Sbjct: 123 TLTDFERNVNLRRAITENLEQHIEALEDVDNAQVTLVLPEDKLFQEDQNPVTASVIITPR 182

Query: 181 NPSVYKS----AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-----ILGKSL 231
             S         E I  LV  AV  L   ++ + D  G +L       +     +  + L
Sbjct: 183 PGSDITQSRSKIEGIVKLVRLAVEGLKDENIVISDQRGVVLNDFADMADFDRLELSKRQL 242

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRS-AVVAELNMDTQQI-REIVY-------DPDS 282
              Q ++   +  I   ++   G D      V  +L+   + +  E  +       +P++
Sbjct: 243 DQKQRLEATYKNQIFTEMSQIFGSDRVSILKVDIDLDFRKETVSTEEHFPVTTVEDNPNT 302

Query: 283 K---------VERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKE 333
                     + RS  + K+  +     PE     E   P        +   + N +K  
Sbjct: 303 PYNEREYVLSIPRSSEIVKEEFKGTGFNPEGPPGQEGQTPPAYKD---MNNLVGNYNKNS 359

Query: 334 EQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL------------TEVLGRSADQGKI 381
           E  N E+NT++I      + + R+++ V V+                T+           
Sbjct: 360 EIINQEVNTRNIVEEKSPWTIRRITVGVAVDGVWRWSYNENGTVKLDTDGSIEREYTPVS 419

Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441
           D  L +   ++  A G N  RGD++T+  + F  +  F          D   R    +  
Sbjct: 420 DEDLNKAQTLIEHAVGFNRERGDSVTVQHIQFDRSNQFAQE-------DEHFRAQKRLQQ 472

Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501
           A+++ +  L V  +     R +    + ++     +       +  A           AL
Sbjct: 473 AILYSIIGLAVIIVAFIVFRLISRELERRRRLREEELARQHQMMREA-----------AL 521

Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
            ++ ++    + +++ R    + + +     +M   + E  A+++R W   E
Sbjct: 522 RNAEEEEMEVAMSVEERARMEMQENAI----NMAREHPEDVAQLIRTWLAEE 569


>gi|24215291|ref|NP_712772.1| flagellar MS-ring protein [Leptospira interrogans serovar Lai str.
           56601]
 gi|24196388|gb|AAN49790.1|AE011426_5 flagellar MS-ring protein [Leptospira interrogans serovar Lai str.
           56601]
          Length = 565

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 120/593 (20%), Positives = 228/593 (38%), Gaps = 74/593 (12%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            IL+ + +FF   T+L  T+ LIL  V L  ++            +   L+  L   D  
Sbjct: 7   KILNNIREFF---TTLDTTKKLILGGVALTVLIAIGILSTISLQKNRMVLFKDLTSKDFA 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            ++  L      +  S + S I+V      +    LA + L  +    G+ELF  V+ F 
Sbjct: 64  EVTKKLDSLGYQYG-SSDTSVITVDPEQRQEIVTKLAQENLIPAGVQ-GWELF-NVDKFT 120

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
            T F ++I + RAL+G I +++ ++  +  A V+I  P+   F    +   ASV++  I 
Sbjct: 121 ETQFDKDIKKYRALKGAIEQSLMTLRSVDKAYVNIAFPEDELFSSNSSPVKASVILHYIP 180

Query: 182 P---SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI- 237
                  K  + I +LV+ AVP L   +V+V D+ GK+++  E +       L IVQ   
Sbjct: 181 GVESLSRKEVKGIVNLVSRAVPKLKPENVSVADADGKIISDFEEDLEKERLELRIVQEKL 240

Query: 238 ----QHEIEMNI--NKALAAFLGVDNFRSAVVAE--LNMDTQQIREIVYDPDSKVE---- 285
               +  I+  I     L   LG ++       E  LN D +  ++    P   +     
Sbjct: 241 RIGEEQRIQRLIDMRNTLRWLLGGEDRVDITRFEYNLNWDKESYKDNSVSPVVAIPDNPN 300

Query: 286 ---------------RSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD 330
                           S + +K+  +     P+     E   P+++              
Sbjct: 301 TPYSELKLVDGYSLKVSSKETKEDFKGRGFTPDGPAGTE---PNIAPGYKDTDYQKAEYS 357

Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA-----DQGKIDSYL 385
           K E  +NYE N +        +K+E+++++VV++     +                +  L
Sbjct: 358 KAENINNYEFNRRVSEVQKQPWKVEKVNLSVVIDGVWEKKEKEDGTGYDRKYVPVSEDEL 417

Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445
            +I K + +A GI+  RGD I++ ++    +  F S   ++     + R        ++ 
Sbjct: 418 RQIRKNLESAVGIDKARGDQISVITIPKDRSAQFASEDEELRKQKAI-RQMIIASLIIIL 476

Query: 446 LVGTLLVTFLGLH---ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALD 502
           L+   ++ +  +    A RRL   + A + ++  ++ L             + +++ A  
Sbjct: 477 LLIVSILVYRAIKKEIARRRLREEELAAQQQMMREAALR------------VMDESGAEV 524

Query: 503 SSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
             + D       L++ IN             +     E  A++LR W   E  
Sbjct: 525 ELSLDEKYRRELLENAIN-------------LAREKPEEVAQLLRTWLSEEEA 564


>gi|297584035|ref|YP_003699815.1| flagellar M-ring protein FliF [Bacillus selenitireducens MLS10]
 gi|297142492|gb|ADH99249.1| flagellar M-ring protein FliF [Bacillus selenitireducens MLS10]
          Length = 528

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 108/575 (18%), Positives = 224/575 (38%), Gaps = 81/575 (14%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
            ++  +F++S +   + R L++ +V+L+ I   +A  +  +  +   LY  L + +   I
Sbjct: 9   REKATEFWQSRSK--KQRGLLIGAVVLI-IAFIIALSWVGSRTNLVPLYSNLTIQETGEI 65

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    I   +S +G+SI VP + V   ++ LAA+G+P +     Y  F     FG T
Sbjct: 66  KANLDGRGIQNEVSADGTSILVPETAVDNLKVELAAEGIPQTGR-IDYGTFGDNMGFGTT 124

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG-ARPTASVMIRAINP 182
               ++    AL+  +   I+++ G+  A+V I +P+   + +   +  TAS+++     
Sbjct: 125 DSEFQLLERAALQTTLEDLIRNVDGVTNAQVMITLPEESVWLQETPSEATASILLNMQAG 184

Query: 183 --SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS-------I 233
                    ++ HL + +VPNL + ++ ++D   + L   E +  +   SLS       I
Sbjct: 185 YSLDESQIRSLYHLASRSVPNLPVENIVIMDQFSRYLEL-EDQPGMADSSLSVYEQHRAI 243

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-DSKVERSIRLSK 292
            + I+ +++ ++ + L   +G D    ++  +L+   +   E + +P D +    I +S 
Sbjct: 244 QRDIERDLQRDLQQMLGTMMGPDKVLVSISTDLDFTEENRTEDLVEPVDEENMEGIAISV 303

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPL------PRSLENTDKKEEQSNYEINTKSIA 346
           +      S  + A   +  +P   +  +P            + +  EE+ N ++N     
Sbjct: 304 ERITETFSGEDIA---DGGVPGAGEDDIPNFPGVGAGAGAGDYELIEERINNDVNRIHRE 360

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT--------GI 398
            T   Y+L  +SI V+V      ++   S  Q  +D   A + +IV            G 
Sbjct: 361 ITESPYQLRDISIQVMVEPPDPEDIG--SLPQQTLDDIQAMLTQIVRTTIPDEVTAEWG- 417

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           +    D + ++  +F     F      + +          ++ ALV     L V      
Sbjct: 418 DEELADRVLVSPQEFFGRVEFEEPQTGIPWW-------YFLVGALVLGAVILAVVL---- 466

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
            LRR    +  +                              + S+  D      + + +
Sbjct: 467 -LRRGREEEVTE------------------------------VASAEDDFRLPPIDKKPQ 495

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                 KQ   +L  + +   + F+K++R W   E
Sbjct: 496 TEEGARKQ---QLEDLAKDKPDEFSKLIRTWLSDE 527


>gi|308068652|ref|YP_003870257.1| flagellar M-ring protein FliF [Paenibacillus polymyxa E681]
 gi|305857931|gb|ADM69719.1| flagellar M-ring protein FliF [Paenibacillus polymyxa E681]
          Length = 527

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 107/564 (18%), Positives = 224/564 (39%), Gaps = 59/564 (10%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
            D++  ++ + +   + + ++L S +   I+  +          Y+  +  L  +D   +
Sbjct: 9   RDKISGYWNNFS---KKQKILLVSTLAFIIIAVVVLTMQFTKTEYEVAFRDLNANDAAGV 65

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L  A I ++++  G+ ISVP++   KA++ + +QGL    S          ++ G+T
Sbjct: 66  IKYLDSAGIPYQLNAGGTQISVPTANADKAKVDVGSQGLIQKGSIGMSAFDQSSSAIGMT 125

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-INP 182
                +    AL GEI + ++ + G+ +++  I MP    F  +  +  AS  I+    P
Sbjct: 126 ENEFNVKYNNALNGEIQQLLERMDGVQSSKAVINMPKENIFAGLEEKDKASASIQMEFEP 185

Query: 183 SVYKSAEAI---RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN----ILGKSLSIVQ 235
               + +AI    +LV  AVPNL + ++T+ +   +L+   +  +      + +++++ +
Sbjct: 186 GFTPNQQAIDGYFNLVKTAVPNLPVENITITNKEYELIPTAKGGQGGLTSGVQENMALQK 245

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK-----VERSIRL 290
             + ++  N+ + L+  +G D     V+++LN D    +E +  P  +     +E S + 
Sbjct: 246 KFESDVRNNVQQFLSKIVGDDKVNVLVMSQLNFDKVTSKEQMVTPVDQTKMKGIEISAQQ 305

Query: 291 SKDAQRSETSQPES-AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
            +++    + Q    A T  Q++P           S   +DK     NYE+N  +     
Sbjct: 306 IQESYTGSSGQTGGVAGTGTQDVPGYPGGANSGNTS---SDKSSSTINYEVNRIARDIIQ 362

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
             Y ++ L+I V V      + L  +A Q  I + L  I +   A +G      D     
Sbjct: 363 SPYTVKDLTINVAVEPPTGQQTLD-TATQTAIQNILVNIVRASLANSGTTITDADLAKKV 421

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
           S+ F  +Q   +     +F    +     +  A++ L+    V FL +   R+     D 
Sbjct: 422 SV-F--SQAVPAPASTNTFFSASNPWLWGIGAAVLALLAG--VIFLIVRGRRKQEEELDE 476

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
                    ++  P    ++T   + N++                           Q   
Sbjct: 477 ------ELQLMPTPTEFPSITMESVTNES---------------------------QVRK 503

Query: 530 RLLHMIEINEERFAKILRKWARSE 553
           +L  + +   + F  +LR W   E
Sbjct: 504 QLESLAKKKPDEFVNLLRTWLADE 527


>gi|288553065|ref|YP_003425000.1| flagellar MS-ring protein [Bacillus pseudofirmus OF4]
 gi|288544225|gb|ADC48108.1| flagellar MS-ring protein [Bacillus pseudofirmus OF4]
          Length = 524

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 108/573 (18%), Positives = 216/573 (37%), Gaps = 82/573 (14%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
            ++ +F+   T   ++   I A   +   +L +      N  +   LY  L + +  +I 
Sbjct: 10  QKVTEFWSGRTKKQKS---IYAGAFIAVALLLILLLLLGNRSNNVPLYSNLTLQETGQIK 66

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L    I   ISDNG++I VP +MV   ++ LAA+G+P S S   Y  F     FG+T 
Sbjct: 67  ETLDARGIPAEISDNGTTILVPEAMVDSLKVDLAAEGIPRSGS-IDYSFFQDQMGFGMTD 125

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARP-TASVMIRAINP- 182
               +     ++ E+   I++I+G+  A V I +P+   +        TAS+++      
Sbjct: 126 NEFSVMERGLMQTELQDLIRNINGVNHANVMITLPEESVWLNTTQEAATASIVVDLAPGY 185

Query: 183 -SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSLSIVQA 236
                  +A+ HLV+ +VPNL + ++ +++   +    +         +   +  +I + 
Sbjct: 186 QLDQNQVKALYHLVSKSVPNLPIENIVIMNQMFEDYFYDNDGNQSTTLSAFEQQRTIQRE 245

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE---IVYDPDS--KVERSIRLS 291
           I+ ++ +N+ + L   +G D    +V  +++   +  +E      DP++   +  SI   
Sbjct: 246 IERDLTLNLQRMLGTVVGQDKVLVSVTTDIDFTQENRQESLVEPVDPENIEGIAVSIERV 305

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
            +    E +         + +P+       + +     ++ E++ N E+N  +       
Sbjct: 306 TETYTGEGTPAGGVEGTGEGIPNF---PGAVGQGESEYERTEDRINNEVNRINRDIVESP 362

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT-----------GINS 400
           YK+  L I V+V      +VL     Q ++D     +  IV  +            GIN 
Sbjct: 363 YKIRDLGIQVMVEPPEGMDVL----PQERLDDIQQILGTIVRTSISGVYADELTEAGINE 418

Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460
           +    I ++S  F          +             TVI   +++V  +LV  + L  +
Sbjct: 419 K----IYVSSQPFEGKPDTTQAPL-------------TVIPVWMYVVAGVLVVIIILLIV 461

Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520
             +      ++ E+  +   +  P      TG                            
Sbjct: 462 LLMRKRKQEEEEELVIQQQAAVVPDLPDEDTGESATKR---------------------- 499

Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                    +L  M +   E F+K+LR W   +
Sbjct: 500 --------KQLERMAKEKPEEFSKLLRTWLSED 524


>gi|172057888|ref|YP_001814348.1| flagellar MS-ring protein [Exiguobacterium sibiricum 255-15]
 gi|171990409|gb|ACB61331.1| flagellar M-ring protein FliF [Exiguobacterium sibiricum 255-15]
          Length = 522

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 94/558 (16%), Positives = 193/558 (34%), Gaps = 58/558 (10%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           L   ++  + + +  I+    +IL  I   + A  +++ P    LY KL   +  +++  
Sbjct: 12  LKTTWQEWSLVKKATII---GIILFLIAAIIVAAIWLSKPTMTPLYSKLSPQEAGQVTEK 68

Query: 67  LSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
           L+E  +   +    +G +I VP       ++ LA  G+P S     Y  F +   FG T 
Sbjct: 69  LNEDGVKSEVVSGTDGVTILVPEESAENLKVELATAGIPKSG-QIDYSFFSENAGFGTTD 127

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAINPS 183
               I     ++ E+   I  ++GI AA+V I +P+   F        T SV++ +   S
Sbjct: 128 KEMNILERDTMQTELENLITQVNGIDAAKVMITLPEKSVFLSDKEETSTVSVVLTSSAGS 187

Query: 184 VYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS-LSIVQAIQHE 240
                  + + HL+A ++PNL   ++T++D         +  +   G   + + +  + +
Sbjct: 188 DLNQQTVQGLYHLIAKSIPNLKEENITIMDQYFTYYEPGKGAQTAGGTDPMQLKKTTEKD 247

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-DSKVERSIRLSKDAQRSET 299
           +   I + L+  LG      +V A++++  +Q  + + +P D      I  S +      
Sbjct: 248 LRQQIQQMLSVVLGPQKALVSVTADVDVTQRQEEQKLVEPVDPDKIEGIVTSAEKVAEAY 307

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           +   +  T         +       + + ++K  +  NYE+N  +   T   Y++  L I
Sbjct: 308 TGAANEGTAGTGENETINFPQGTGTTGDTSEKTHDIINYEVNRITKQITGAPYEIRDLGI 367

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG----INSRRGDTITITSMDFLE 415
            V+V   +    +             + I   ++         ++   + + + S  F E
Sbjct: 368 QVIVEPPKGQNQIDPQLQTDLQTMMYSIIRTSLTKTDAKTTLTDAELANKVVVMSRPFAE 427

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
                  T                          L+V       +RR    +  +  E  
Sbjct: 428 TPKQTVTTETTPMWVWF-----------ALGAAALVVIGAIFLLMRRRKTAEIEELEEWT 476

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
                 P   +   + G +                                   +L  + 
Sbjct: 477 PIETEVPELSTEDTSDGAV--------------------------------KRKQLEKLA 504

Query: 536 EINEERFAKILRKWARSE 553
             N + FAK+LR W   +
Sbjct: 505 ASNPDEFAKLLRTWLAED 522


>gi|300871679|ref|YP_003786552.1| flagellar M-ring protein FliF [Brachyspira pilosicoli 95/1000]
 gi|300689380|gb|ADK32051.1| flagellar M-ring FliF protein, FliF [Brachyspira pilosicoli
           95/1000]
          Length = 562

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 116/592 (19%), Positives = 224/592 (37%), Gaps = 73/592 (12%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVK-LEVSDV 60
            ++ Q+   F   T + +    IL  V++V +   +A  FF +      L+   L   D 
Sbjct: 3   KLIGQVKNIFAKTTKVQK---AILIGVLVVALGAIVATVFFTSRRAGTLLFQNALTQEDA 59

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             +   L   NI ++   NG       +   KA + L  +G      + G+ELFD     
Sbjct: 60  RNVIAVLDANNIKYQYR-NGFITLNNEADKAKAELELVKEGRMPMGVD-GWELFDA-PRI 116

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           G+T    +I + R+L   I + +  +  +  A V +  P       + +  TASV+I+A 
Sbjct: 117 GITDAELDINKRRSLTKAITQLLTKLDFVQEATVDLAFPKKEYLTDVDSPVTASVVIKAQ 176

Query: 181 N-----PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-----ILGKS 230
                     K+   ++ L+A  V  L    VT+ DSTG +LT    E       +  + 
Sbjct: 177 PFKEEILRDPKTVRGLQQLIAMGVDKLKPEFVTITDSTGYVLTDFTDEAANLKLKVAQEE 236

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---------- 280
           L IV   + +IE  I + L      +   + +  EL  D   I   +  P          
Sbjct: 237 LKIVDRERKKIENKIRQTLGRIY-TNRVETTIALELIWDDISITNNLVLPIILKEDDPAT 295

Query: 281 -------DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKE 333
                   +KV+ S R   +  + +   P+ A   E+N+P     K    ++   TD ++
Sbjct: 296 PYDDSQFTNKVQVSSRTVTEDWKGQQFIPQGAAGAEENVPPGYKDKTDRWQTYTKTDSQD 355

Query: 334 EQSNYEINTKSIATTHDNYKLERLSIAVVVNKG--RLTEVLGRSA----------DQGKI 381
              NYE++ +  A    +Y++ ++S AV ++    ++ +  G +                
Sbjct: 356 ---NYELSKRYEAIKKGSYQIGKISAAVALDGRWTKVYDANGNAIITNGSSYLREYHPVT 412

Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441
              +  +  +V AA G + +RGD +++T + F     FN+   ++   + + R       
Sbjct: 413 ADEIKNVTALVQAAIGYDLKRGDQVSVTHIQFDHWDRFNAEDAKLLRNNFIKR------- 465

Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501
            L+  +  LL  F+ +  +R +             +           +    M     A+
Sbjct: 466 VLIISMIGLLALFILVLIIRSIQK-----------ELARRRRLREEELERKQMEMRRQAM 514

Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
            ++N++  S        +     K+    ++ +     E  A++LR W   +
Sbjct: 515 MNANEEPMSEI-----NLEDAARKKLMEEVIRVSHERPEDVAQLLRTWMADD 561


>gi|51894139|ref|YP_076830.1| flagellar basal-body M-ring protein [Symbiobacterium thermophilum
           IAM 14863]
 gi|51857828|dbj|BAD41986.1| flagellar basal-body M-ring protein [Symbiobacterium thermophilum
           IAM 14863]
          Length = 576

 Score =  251 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 121/589 (20%), Positives = 242/589 (41%), Gaps = 63/589 (10%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           ++ ++ Q +   +   R     L   +LV + L +A   ++N P ++  Y   + S+V+ 
Sbjct: 8   VMGRVKQIWGGMSRPVRW----LTVGLLVALALSLAVAVYLNRPRWEVFYKASDPSEVST 63

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +   L E  +  R++ NG  I VP+     A +  A  GLPSS  + G E+F +   FG 
Sbjct: 64  LVAHLDELGVPSRVTGNGLVIEVPARERSAANLAKAQAGLPSSG-HVGLEIFAQPQ-FGA 121

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T F +++   RA+EGE++R++  I+ I  A+V++ +P+   F +    P+A+V+++  + 
Sbjct: 122 TEFDRQVNYKRAMEGELSRSLMRIADIEYAKVNLNVPEKSVFVRDEEPPSAAVLVQLRSG 181

Query: 183 SVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239
               +    AI + VA++V  L    VTV+DS G+ L  A++  + +  ++L+  +  + 
Sbjct: 182 RTLDADNVTAIINFVASSVEGLTPDRVTVIDSQGRELRPADDDAQRLDAEALAFQRQREE 241

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           ++   + + L    G  N  ++V  EL+  + +  E +      V      S    +  +
Sbjct: 242 QLTQKLLQVLEPIFGRGNVAASVTVELDHQSSRTEERIVGQGVPVATVSERSGSQTQGTS 301

Query: 300 SQPESAVT---VEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTH 349
           ++P    T    +   P V+   VP          S E+   + E   Y++  ++  T  
Sbjct: 302 TEPAPVSTQLPGQGETPGVTAPAVPIYQEPSVSTESGESYQSRTETR-YDVGERNQVTVS 360

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
               ++R+S AV +N+  LT             S +  I +  ++ATG  ++  D +T+ 
Sbjct: 361 PAGSVKRISAAVTINQDTLT------------QSEIDLIRQHAASATG--AQLSD-VTVL 405

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
           +M F      ++           SR F     A+   + + L+    L   RR    + A
Sbjct: 406 AMSFRPTAQADAAPPAPEAAAG-SRLFDARALAIGLGIASFLLILAALLTRRRESEPEFA 464

Query: 470 KKGEVG-------GKSILSPPPISS------------------AVTTGLMPNDNIALDSS 504
             G             +  P P+                    A  T +     +     
Sbjct: 465 LPGHPAVGTALDVALGLDQPLPVQQAAAAEAAPAAPEAPEAAPAEETDVQITGEMTAAEK 524

Query: 505 NQDIFSHSRNLQSRI--NSYVSKQSDLRLLHMIEINEERFAKILRKWAR 551
            +++    R  +  I    ++       +  ++E   E  A+++R W +
Sbjct: 525 FEEVMKRRRPPRQPIDPEDFMDDDILADIDVLLEQAPEACAEVIRHWLK 573


>gi|317129209|ref|YP_004095491.1| flagellar M-ring protein FliF [Bacillus cellulosilyticus DSM 2522]
 gi|315474157|gb|ADU30760.1| flagellar M-ring protein FliF [Bacillus cellulosilyticus DSM 2522]
          Length = 532

 Score =  251 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 92/449 (20%), Positives = 185/449 (41%), Gaps = 31/449 (6%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++ ++F++  T   R  ++    +IL+  + FM   +F +  +Y  LY  L V +   I 
Sbjct: 10  NKSIEFWQGRTKRQRGLLVTTILLILLVFLAFM---WFGSRTNYVPLYSNLTVQETGEIK 66

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L    +   +S +G+SI VP + V + ++ LAA+GLP+S     Y  F +   FG T 
Sbjct: 67  NTLDARGVPSEVSSDGTSILVPEAQVNELKVSLAAEGLPNSGR-IDYSTFSENMGFGTTD 125

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAINP- 182
               +    AL+  I   I++I G+  A+V I +P+   +        TASV++   +  
Sbjct: 126 NTFNLLERAALQTSIEDLIRNIDGVRNAQVMITLPEESVWLSDDREAATASVLLNLDHGY 185

Query: 183 -SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK------SLSIVQ 235
                   A+ HLV+ ++PNL + ++ ++D   + L  ++    +            I +
Sbjct: 186 SLDQNQVRALYHLVSRSIPNLPVENIVMMDQMSRYLELDDQTTTVDSSLTIYEQQRQIQR 245

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS------IR 289
            I+ +++  + + L   +G D     V  +L+   +  +E +  P ++ + S       R
Sbjct: 246 DIERDLQRQVQQMLGTMVGTDKVLVTVSTDLDFTQENRQEQLVTPVNEEDMSGIAVSIER 305

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
           +++     E +    A T E ++P            + + +K EE+ N ++N        
Sbjct: 306 ITETYTGQELADGGVAGTGETDIPGY---PGVGNGGVGDYEKMEERINNDVNRIQREIVE 362

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGK-----IDSYLAEINKIVSAA---TGINSR 401
             YK+  ++I V++    L +       Q +     +   L +I +    A         
Sbjct: 363 SPYKIRDIAIQVMLEPQVLEDATPEQLQQEQERVNAVQQMLGQIVRTSIDAEYTAQWEEE 422

Query: 402 RGDT-ITITSMDFLENQLFNSGTVQVSFM 429
             D+ I ++S  F            + F 
Sbjct: 423 DIDSRIFVSSQQFFGKPDIPEPPSNIPFW 451


>gi|45657269|ref|YP_001355.1| flagellar MS-ring protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45600507|gb|AAS69992.1| FliF [Leptospira interrogans serovar Copenhageni str. Fiocruz
           L1-130]
          Length = 566

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 115/590 (19%), Positives = 219/590 (37%), Gaps = 67/590 (11%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            IL+ + +FF   T+L  T+ LIL  V L  ++            +   L+  L   D  
Sbjct: 7   KILNNIREFF---TTLDTTKKLILGGVALTVLIAIGILSTISLQKNRMVLFKDLTSKDFA 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            ++  L      +  S + S I+V      +    LA + L  +    G+ELF  V+ F 
Sbjct: 64  EVTKKLDSLGYQYG-SSDTSVITVDPEQRQEIVTKLAQENLIPAGVQ-GWELF-NVDKFT 120

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
            T F ++I + RAL+G I +++ ++  +  A V+I  P+   F    +   ASV++  I 
Sbjct: 121 ETQFDKDIKKYRALKGAIEQSLMTLRSVDKAYVNIAFPEDELFSSNSSPVKASVILHYIP 180

Query: 182 P---SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI- 237
                  K  + I +LV+ AVP L   +V+V D+ GK+++  E +       L IVQ   
Sbjct: 181 GVESLSRKEVKGIVNLVSRAVPKLKPENVSVADADGKIISDFEEDLEKERLELRIVQEKL 240

Query: 238 ----QHEIEMNI--NKALAAFLGVDNFRSAVVAE--LNMDTQQIREIVYDPDSKVE---- 285
               +  I+  I     L   LG ++       E  LN D +  ++    P   +     
Sbjct: 241 RIGEEQRIQRLIDMRNTLRWLLGGEDRVDITRFEYNLNWDKESYKDNSVSPVVAIPDNPN 300

Query: 286 ---------------RSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD 330
                           S + +K+  +     P+     E   P+++              
Sbjct: 301 TPYSELKLVDGYSLKVSSKETKEDFKGRGFTPDGPAGTE---PNIAPGYKDTDYQKAEYS 357

Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA-----DQGKIDSYL 385
           K E  +NYE N +        +K+E+++++VV++     +                +  L
Sbjct: 358 KAENINNYEFNRRVSEVQKQPWKVEKVNLSVVIDGVWEKKEKEDGTGYDRKYVPVSEDEL 417

Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445
            +I K + +A GI+  RGD I++ ++    +  F S   ++     + +     +  ++ 
Sbjct: 418 RQIRKNLESAVGIDKARGDQISVITIPKDRSAQFASEDEELRKQKAIRQMIIASLIIIL- 476

Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505
               L+V+ L   A+++        + E            +  V         ++LD   
Sbjct: 477 ---LLIVSILVYRAIKKEIARRRRLREEELAAQQQMMREAALRVMDESGAEVELSLDEKY 533

Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           +     +                    ++     E  A++LR W   E  
Sbjct: 534 RRELLENAI------------------NLAREKPEEVAQLLRTWLSEEEA 565


>gi|257140593|ref|ZP_05588855.1| flagellar MS-ring protein [Burkholderia thailandensis E264]
          Length = 377

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 82/378 (21%), Positives = 137/378 (36%), Gaps = 18/378 (4%)

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246
              AI  LV+++VP++   +VT++D  G LLT       +    L  VQ I+   +  I+
Sbjct: 6   QVLAITRLVSSSVPDMPAKNVTIVDQDGNLLTQTASATGLDASQLKYVQQIERNTQKRID 65

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---TSQPE 303
             LA   G  N RS V A+++    +     Y P+   ++S   S+    S     S   
Sbjct: 66  AILAPIFGAGNARSQVSADVDFSKIEQTSESYAPNGTPQQSAIRSQQTSTSTELAQSGTS 125

Query: 304 SAVTVEQNMPH--------VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
                  N P          S+ +   P +   +D+K+  +NYE++            ++
Sbjct: 126 GVPGALSNTPPQPASAPIVASNGQPAAPAATPVSDRKDSTTNYELDKTVRHVEQSMGTIK 185

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           RLS+AVVVN    T+  GR   Q      LA++ ++V  A G + +RGD++ + +  F  
Sbjct: 186 RLSVAVVVNYQPSTDAKGRVTMQPLTADKLAQVQQLVKDAMGYDEKRGDSVNVVNSAFSA 245

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
                +        D++           V      L       ALRR           V 
Sbjct: 246 AADPFANLPWWRQPDMIELGKDIAKWLGVAAAAAALYFMFVRPALRRAFPPPAEPAAAVP 305

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
                   P  +    GL   D   L     +        +S  N Y       R   + 
Sbjct: 306 ALDG----PDDALALDGLPSPDKKQLAE-EDEEHPALLAFESEKNRYERNLDYAR--TIA 358

Query: 536 EINEERFAKILRKWARSE 553
             + +  A +++ W   E
Sbjct: 359 RQDPKIVATVVKNWVSDE 376


>gi|261407984|ref|YP_003244225.1| flagellar MS-ring protein [Paenibacillus sp. Y412MC10]
 gi|329929286|ref|ZP_08283039.1| flagellar M-ring protein FliF [Paenibacillus sp. HGF5]
 gi|261284447|gb|ACX66418.1| flagellar M-ring protein FliF [Paenibacillus sp. Y412MC10]
 gi|328936655|gb|EGG33098.1| flagellar M-ring protein FliF [Paenibacillus sp. HGF5]
          Length = 526

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 104/563 (18%), Positives = 219/563 (38%), Gaps = 58/563 (10%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
            +++ Q++   ++  + +I+++A+V  V I L +    F +   Y+  +  L  SD   I
Sbjct: 9   RERMTQYWNQFSN--KQKIMLIATVAFVLIALVVLTMQF-SKTKYEVAFRDLNSSDAAGI 65

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    I +++S++G SI VPS+   K +I + +QGL  + +          ++ G+T
Sbjct: 66  ISHLETQGISYKLSEDGRSILVPSTSAAKVQIDVGSQGLVQNGTIGFETFEKNASAIGMT 125

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK--IGARPTASVMIRAIN 181
               E+  V AL GE+ R ++ + G+  A V + +P    F K     + +ASV+++   
Sbjct: 126 DNEFEVKYVNALNGEVERLLEKMQGVQDATVLLNLPKESVFAKNGNEDQASASVVVQFKP 185

Query: 182 PSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI----LGKSLSIVQ 235
                    +   +LV  A+PNL + ++T+ +   +LL   +  +      + ++ ++ +
Sbjct: 186 GYRPNQEVIDGYYNLVKTAIPNLPIENITITNDEVELLATAKGGQGGLIGKVEENFALQK 245

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-DSKVERSIRLSKDA 294
             ++++  N+ + L+ ++G +     V ++LN D  Q +E +  P D +  + I LS   
Sbjct: 246 KFENDVRQNVQQFLSQYMGSNKVNVLVASKLNFDQVQSKENIVTPVDEEEMKGIELSVQE 305

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKE--EQSNYEINTKSIATTHDNY 352
            +   S   S       +   +    P       T+ +E  +  NYE+N  +       Y
Sbjct: 306 IQKNYSGTGSPTGGVAGVGEEAVPGYPSDSGSGETNSEELSKTVNYEVNRITKDIIASPY 365

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG--INSRRGDTITITS 410
            ++ L+I V V      + L  +      +  +  +   +S +     ++     +++ S
Sbjct: 366 TVKDLTINVSVEPPAGQQTLDDATRTAIQNILVNIVRASLSDSDSTYTDADLSKKVSVIS 425

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
             F  N   N  +V        S+     I      +      F     +RR     +  
Sbjct: 426 QVFNVNADENPKSV-------FSQPVLWGIGIAALALIAGGTYFF----IRRRRQQQEEL 474

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
           + ++    +   P I+    T                                  Q   +
Sbjct: 475 EEDIQLPPVTEFPSINLESITNE-------------------------------SQVRKQ 503

Query: 531 LLHMIEINEERFAKILRKWARSE 553
           L  + +   + F  +LR W   E
Sbjct: 504 LETLAKKKPDEFVNLLRTWLAEE 526


>gi|307699904|ref|ZP_07636955.1| flagellar M-ring protein FliF [Mobiluncus mulieris FB024-16]
 gi|307614942|gb|EFN94160.1| flagellar M-ring protein FliF [Mobiluncus mulieris FB024-16]
          Length = 536

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 118/554 (21%), Positives = 218/554 (39%), Gaps = 36/554 (6%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           LD++    K  T   +T ++I  +V+++     +    +V  P Y  L+  L   D   +
Sbjct: 9   LDRVKDTVKEFTLAQKTLVIIGVAVLVLG---GVVLYSWVGRPSYTVLFSGLTEKDQAAV 65

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  L    I ++++DNG  + VPS+ + +AR+ LAA  LP +   +GY + D +     +
Sbjct: 66  TQQLDATGIKYQVADNG-IVKVPSNDIQRARMDLAANNLP-AEPTTGYAVLDNL-GVAAS 122

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR--PTASVMIRAIN 181
            F Q++ + RALEGE+A+TI S+  I  + V + +P    F         TASV +    
Sbjct: 123 DFQQQMAKKRALEGELAKTINSMDVIEKSSVALAIPAETVFADPKKPVATTASVTVEPKK 182

Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQH 239
                  + +AI ++V+A++PNL  G V+V+D+ G  L+      +            + 
Sbjct: 183 GREVDNNTVQAIVNMVSASIPNLAKGGVSVVDTAGNTLSDKVSAGSAAAT------ETEK 236

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY-DPDSKVERSIRLSKDAQRSE 298
            +       +   +GV N + +   EL  +T+Q    VY DP+  V++          S 
Sbjct: 237 SLVAKALAMVEPLVGVGNAKVSAHVELAQETEQKTTRVYTDPEGGVKQLSSSKASENYSG 296

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
           +    + V    N+ +  + +       EN    +  +N  +N +   TT         +
Sbjct: 297 SGAVVAGVLGPDNIGNPYELRNGNGGKYENN---QTVNNNAVNEELTNTTRSPGAAMSKT 353

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           I+VV+N+     +             + ++   V+AATGIN+ RGD I ++   F +   
Sbjct: 354 ISVVLNQETARRLD------------MTQVRDSVAAATGINAARGDVINVSRAPFDDTAQ 401

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
                          R   T +  +   V   L+  L +           A++ E     
Sbjct: 402 KAREKAAEEAAAAAERAKTTTL--IRQAVIAGLIILLLIIIAAVAKKRAKAREREALDLG 459

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR--LLHMIE 536
            L   P    +T        I      +         +  ++  + K    R  +  +  
Sbjct: 460 ELDQLPDPYTLTPPEEEALAIEAAEVPEPEPEPEEEPEPELDPIMLKLEAKREEIAELAL 519

Query: 537 INEERFAKILRKWA 550
              +  A+ LR W 
Sbjct: 520 DKPQLVAEQLRAWM 533


>gi|328911724|gb|AEB63320.1| flagellar basal-body M-ring protein [Bacillus amyloliquefaciens
           LL3]
          Length = 510

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 72/362 (19%), Positives = 143/362 (39%), Gaps = 17/362 (4%)

Query: 43  VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL 102
            +S     LY  L   +  +I   L    +   ++D G+ I VP S V   ++ LAA+GL
Sbjct: 19  TSSEKMVPLYKDLSAEEAGQIKEELDTKKVSSELADGGTVIMVPESQVDSLKVQLAAEGL 78

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162
           P + S   Y  F K   FGLT    ++ +V A + E++  I  + GI +++V I MP   
Sbjct: 79  PKTGS-IDYSFFGKNAGFGLTDNEFDVLKVDATQTELSNLINEMDGIKSSKVMINMPKEA 137

Query: 163 SFR-KIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
            F  +     +AS++++              + HLV+ +VPNL   ++ ++D        
Sbjct: 138 VFVGEDQPEASASIVLQIKPGYSLDQSQINGLYHLVSKSVPNLKEDNIVIMDQNSTYYDK 197

Query: 220 NEME----RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           ++       +       I   ++ +I+ ++   L   +G D    +V A+++   ++  E
Sbjct: 198 SDSGAGSVSDSYASQQGIKSQVEKDIQKHVQSLLGTMMGQDKVVVSVTADIDFTKEKRTE 257

Query: 276 IVYDPD-----SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD 330
            + +P        +  S     +  + + +          N    +        +  + +
Sbjct: 258 DIVEPVDKDNMEGIAISAEKVAETYKGDGAANGGTAGTGSND-TANYAAANGGSNSGDYE 316

Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINK 390
           K   + NYE+N          YK+  L I V+V           ++   +  + + +I  
Sbjct: 317 KSSNKINYEVNRIHKEIAESPYKVRDLGIQVMVEP---PNPKNAASLTAQRQADIQKILG 373

Query: 391 IV 392
            V
Sbjct: 374 TV 375


>gi|50954404|ref|YP_061692.1| flagellar M-ring protein [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50950886|gb|AAT88587.1| flagellar M-ring protein [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 441

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 105/418 (25%), Positives = 184/418 (44%), Gaps = 26/418 (6%)

Query: 6   QLLQFFKSGTSLGR----TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           +L   +K  +S        +  +    +LV  +       +++ P    LY  L  +D  
Sbjct: 4   RLTTAWKKISSAAAGFSFAQKTVSILAVLVLALGVTGLSLWMSQPQRVPLYTGLSAADAE 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I+  L   N+ ++++D GSSI VP   V   R+  AA GLP+++ N GY L D   S  
Sbjct: 64  AITQQLKTDNVSYQLTDGGSSILVPQESVYTERLKSAAAGLPTAA-NKGYSLLD-NMSIT 121

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
            + F Q +T  RA+EGE+A TI+++ G+ ++ V + +P+   F    A PTASV I   +
Sbjct: 122 TSEFQQSVTYQRAMEGELANTIEAMDGVKSSSVKLAIPEKTVFTDQAADPTASVFIATAS 181

Query: 182 P--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQH 239
                    +AI HL +AA+  +   DV+V+DS+G +L+A     ++   +      +Q 
Sbjct: 182 GHTLTRGQVQAIVHLTSAAIVGMKPADVSVIDSSGAVLSAIGGSASVSDGTAD---TLQA 238

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD-PDSKVERSIRLSKDAQRSE 298
            ++  +   L   LG  N      A L+  T       Y  P      S    K+     
Sbjct: 239 SVQSAVQGMLDKVLGSGNSTVTANASLSQATGTKTTQTYTVPTGAPVTSSSEEKETYTGS 298

Query: 299 TSQPESAVTVEQ---NMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
                  +             +    +  +      K  + N  +N+ +   +     L+
Sbjct: 299 GPAAAGVLGQPSLDVATNGTRNTTRAVGGNGSYQSAKLVKDN-ALNSVTETQSIPAGLLQ 357

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           RL+++VVVNK  + E  G +          A+++++VSAA G+ + RGDT+++  + F
Sbjct: 358 RLTVSVVVNK-TVAEAAGLAT---------AQLSQMVSAAAGVETTRGDTVSVEFVGF 405


>gi|299534787|ref|ZP_07048117.1| flagellar MS-ring protein [Lysinibacillus fusiformis ZC1]
 gi|298729875|gb|EFI70420.1| flagellar MS-ring protein [Lysinibacillus fusiformis ZC1]
          Length = 531

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 94/573 (16%), Positives = 216/573 (37%), Gaps = 69/573 (12%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            I +   QF+ S +   + + +++   ++  I L     FF +   Y  LY  L   ++ 
Sbjct: 7   KIKNDTSQFWTSRS---KKQKIVMIGSVVGVIALAAIVTFFASKTTYVPLYKDLSTREIG 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           ++  AL    + ++I+  G+SI VP   V    + LA++G P + S   Y  F   + FG
Sbjct: 64  QVKEALDSQGVTYQIAPGGTSILVPEEQVDSLLVQLASEGYPQTGS-IDYS-FANSSGFG 121

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI-GARPTASVMIRAI 180
           +T     + +  A E EIA+  +++ G+  A+V I +P+ G F        TAS+++   
Sbjct: 122 MTDNEFNLLKKAATETEIAKLFKNLEGVKDAKVMITVPEEGVFVTDVQGEATASIVLNTD 181

Query: 181 NPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-----TANEMERNILGKSLSI 233
                  +    + +LV+ ++PNL   ++ + +   +       TA+          L +
Sbjct: 182 PGYKFTEQQITTMYNLVSKSIPNLKTENIVISNQFSEYFDLNAATADGTSTTTAEGQLQM 241

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP------DSKVERS 287
            + ++ +++  +   L   +G D    +V  +++   +   E +  P      +     +
Sbjct: 242 KKLVERDLQRQVQNMLGTLMGQDKVMVSVTTDIDFKKENREENLVTPVDEENMEGIAISA 301

Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
            R+++    +  +        E    + +        +  + ++ EE  N ++N      
Sbjct: 302 QRITEQYSGTGAAAAAGTPEAETTTDNFTTYNEGAAGNG-DYERTEETINNDVNRIRKDI 360

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLG-RSADQGKIDSYLAEINKIVSA---ATGINSRRG 403
               YK++ + I V+V     T+        Q  I+  L+ I +   +   A  +   + 
Sbjct: 361 QEAPYKIQDIGIQVIVEPPTATDAASLPDGVQEDIEKILSTIVRTTISKDVAAELTQEQI 420

Query: 404 DT---ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460
           D    +++  +     ++ +   +   ++ ++      VI           + F  + + 
Sbjct: 421 DEKVAVSVQPLYGKATEVADEKPIIPWWVWVIGGILLAVILL---------LAFFIIRSR 471

Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520
           +R    ++    E   + +                     +D  N++I +          
Sbjct: 472 KRAKEEEELSILEEQEELM---------------------VDDINEEIETE--------- 501

Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
              +     +L  M +   + FAK+LR W   +
Sbjct: 502 ---ATMRRKQLEKMAKEKPDDFAKLLRSWIAED 531


>gi|227876739|ref|ZP_03994848.1| flagellar M-ring protein FliF [Mobiluncus mulieris ATCC 35243]
 gi|306817686|ref|ZP_07451428.1| flagellar M-ring protein FliF [Mobiluncus mulieris ATCC 35239]
 gi|227842636|gb|EEJ52836.1| flagellar M-ring protein FliF [Mobiluncus mulieris ATCC 35243]
 gi|304649500|gb|EFM46783.1| flagellar M-ring protein FliF [Mobiluncus mulieris ATCC 35239]
          Length = 536

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 118/554 (21%), Positives = 216/554 (38%), Gaps = 36/554 (6%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           LD++    K  T   +T ++I  +V+++     +    +V  P Y  L+  L   D   +
Sbjct: 9   LDRVKDTVKEFTLAQKTLVIIGVAVLVLG---GVVLYSWVGRPSYTVLFSGLTEKDQAAV 65

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  L    I ++++DNG  + VPS+ + +AR+ LAA  LP +   +GY + D +     +
Sbjct: 66  TQQLDATGIKYQVADNG-IVKVPSNDIQRARMDLAANNLP-AEPTTGYAVLDNL-GVAAS 122

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR--PTASVMIRAIN 181
            F Q++ + RALEGE+A+TI S+  I  + V + +P    F         TASV +    
Sbjct: 123 DFQQQMAKKRALEGELAKTINSMDVIEKSSVALAIPAETVFADPKKPVATTASVTVEPKK 182

Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQH 239
                  + +AI ++V+A++PNL  G V+V+D+ G  L+      +            + 
Sbjct: 183 GREVDNNTVQAIVNMVSASIPNLAKGGVSVVDTAGNTLSDKVSAGSAAAT------ETEK 236

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY-DPDSKVERSIRLSKDAQRSE 298
            +       +   +GV N + +   EL  +T+Q    VY DP+  V++          S 
Sbjct: 237 SLVAKALAMVEPLVGVGNAKVSAHVELAQETEQKTTRVYTDPEGGVKQLSSSKASENYSG 296

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
                  V    N+ +  + +       EN    +  +N  +N +   TT         +
Sbjct: 297 GGAVVGGVLGPDNIGNPYELRNGNGGKYENN---QTVNNNAVNEELTNTTRSPGAAMSKT 353

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           I+VV+N+     +             + ++   V+AATGIN+ RGD I ++   F +   
Sbjct: 354 ISVVLNQETARRLD------------MTQVRDSVAAATGINAARGDVINVSRAPFDDTAQ 401

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
                          R   T +  +   V   L+  L +           A++ E     
Sbjct: 402 KAREKAAEEAAAAAERAKTTTL--IRQAVIAGLIILLLIIIAAVAKKRAKAREREALDLG 459

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR--LLHMIE 536
            L   P    +T        I      +         +  ++  + K    R  +  +  
Sbjct: 460 ELDQLPDPYTLTPPEEEALAIEAAEVPEPEPEPEEEPEPELDPIMLKLEAKREEIAELAL 519

Query: 537 INEERFAKILRKWA 550
              +  A+ LR W 
Sbjct: 520 DKPQLVAEQLRAWM 533


>gi|169827120|ref|YP_001697278.1| flagellar MS-ring protein [Lysinibacillus sphaericus C3-41]
 gi|168991608|gb|ACA39148.1| Flagellar M-ring protein [Lysinibacillus sphaericus C3-41]
          Length = 531

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 93/573 (16%), Positives = 215/573 (37%), Gaps = 69/573 (12%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            I +   QF+KS +   + + +++   ++  I L     FF +   Y  LY  L   ++ 
Sbjct: 7   KIKNDTSQFWKSRS---KKQKIVMIGSLVGVIALAAIVTFFASKTTYVPLYKDLSTREIG 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           ++  AL    + ++I+  G+SI VP   V    + LA++G P + +   Y  F   + FG
Sbjct: 64  QVKEALDSQGVTYQIAPGGTSILVPEEQVDSLLVQLASEGYPQTGT-IDYS-FANSSGFG 121

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI-GARPTASVMIRAI 180
           +T     + +  A E EIA+  +++ G+  A+V I +P+ G F        TAS+++   
Sbjct: 122 MTDNEFNLLKKAATETEIAKLFRNLEGVKDAKVMITVPEEGVFVTDVKEDATASIVLNTD 181

Query: 181 NPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-----TANEMERNILGKSLSI 233
                  +    + +LV+ ++PNL   ++ + +   +       T +          L +
Sbjct: 182 PGYKFTEQQITTMYNLVSKSIPNLKTENIVISNQFSEYFDLNAATTDGASTTTAEGQLQM 241

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP------DSKVERS 287
            + ++ +++  +   L   +G D    +V  +++   +   E +  P      +     +
Sbjct: 242 KKLVERDLQRQVQNMLGTLMGQDKVMVSVTTDIDFKKENREENLVTPVDEENMEGIAISA 301

Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
            R+++    +           E    + +        +  + ++ EE  N ++N      
Sbjct: 302 QRITEQYSGTGAGAATGTPEAETTTDNFTTYNEGTSGNG-DYERTEETINNDVNRIRKDI 360

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLG-RSADQGKIDSYLAEINKIVSA---ATGINSRRG 403
               YK++ + I V+V     T+        +  I+  L+ I +   +   A  +   + 
Sbjct: 361 QEAPYKVQDIGIQVIVEPPTATDAASLPDGVREDIEKILSTIVRTTISKDVAAELTQEQI 420

Query: 404 DT---ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460
           D    +++  +     Q+ +   +   ++ ++      VI           + F  + + 
Sbjct: 421 DEKVAVSVQPLYGKATQVADEKPIIPWWVWVIGGILLAVILL---------LAFFIIRSR 471

Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520
           +R                            + L   +++ +D  N++I +          
Sbjct: 472 KR---------------------AQEEEELSILEEQEDLMIDDINEEIETE--------- 501

Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
              +     +L  M +   + FAK+LR W   +
Sbjct: 502 ---ATMRRKQLEKMAKDKPDDFAKLLRSWIAED 531


>gi|315657517|ref|ZP_07910399.1| flagellar M-ring protein [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
 gi|315491989|gb|EFU81598.1| flagellar M-ring protein [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
          Length = 538

 Score =  246 bits (628), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 116/545 (21%), Positives = 215/545 (39%), Gaps = 33/545 (6%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
              SLG+  + I+   +L+   + + +  +V SP Y  LY  L   D   ++  L    I
Sbjct: 17  GQFSLGQKTLSIIGVAVLILGGVVLYS--WVASPDYTTLYSGLTDKDQAAVTEQLDSQGI 74

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
            ++++DNG  + VP+  V  AR+ LAA  LP+    SGY + D +     + F Q++ + 
Sbjct: 75  KYQVADNG-VVKVPAKDVQSARMSLAAADLPAQ-PTSGYAVLDNL-GVAASDFQQQMAKK 131

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR--PTASVMIRAINPSVY--KSA 188
           RALEGE+A+TI ++  I  + V + +P    F         TASV I   N       + 
Sbjct: 132 RALEGELAKTIDTMDDIDKSSVALAIPQETVFADPKKPVATTASVTITPKNRKDVSNDTV 191

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKA 248
           +AI ++VAA+VPNLD   VTV+D+ G  L+                  ++  +       
Sbjct: 192 QAIINMVAASVPNLDKTGVTVVDTLGNSLSDKVEGGTAAAS------EMEKSLVDKALAV 245

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVY-DPDSKVERSIRLSKDAQRSETSQPESAVT 307
           +   +G  N R +   +L+ D Q     +Y DP+  V+     +   Q S        V 
Sbjct: 246 VEPLVGAGNARVSAQVDLSQDNQVKTTRIYTDPEGGVKPLSASNAAEQYSGGGAVVGGVL 305

Query: 308 VEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367
              N+ +  +       +  NT   +   N  +N +   +T       R S++VV+N+  
Sbjct: 306 GPDNIGNPYELNGNNGGNYTNTQNVQ---NNAVNEEVTQSTRAPGAALRKSVSVVLNQET 362

Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVS 427
              +             +A++  +V+AATGI++  GD + I+   F +     +      
Sbjct: 363 ARRLD------------MAQVRDMVAAATGIDAATGDVVNISRSPFDDTAKKAAEKAAAD 410

Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISS 487
                +      +     + G +++  + + A+ +       ++    G+    P P + 
Sbjct: 411 EAAAEAAAKTASLIRQAVIAGLIILLLIIIAAVAKKRAKAREREALDLGELDQLPDPYTL 470

Query: 488 AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR--LLHMIEINEERFAKI 545
           +           A     +         +   +  + K    R  +  +     +  A+ 
Sbjct: 471 SAPEEEALEIEAATIPEPEPEPEPEPEPEPEPDPILLKIEAKREEIAELALDKPQLVAEQ 530

Query: 546 LRKWA 550
           LR W 
Sbjct: 531 LRAWM 535


>gi|269976266|ref|ZP_06183262.1| flagellar M-ring protein FliF [Mobiluncus mulieris 28-1]
 gi|269935595|gb|EEZ92133.1| flagellar M-ring protein FliF [Mobiluncus mulieris 28-1]
          Length = 536

 Score =  246 bits (628), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 114/555 (20%), Positives = 221/555 (39%), Gaps = 34/555 (6%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
             LD++    K  T   +T ++I  +V+++     +    +V  P Y  L+  L   D  
Sbjct: 7   NTLDRVKDTVKEFTLAQKTLVIIGVAVLVLG---GVVLYSWVGRPSYTVLFSGLTEKDQA 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            ++  L    I ++++DNG  + VPS+ + +AR+ LAA  LP +   +GY + D +    
Sbjct: 64  AVTQQLDATGIKYQVADNG-IVKVPSNDIQRARMDLAANNLP-AEPTTGYAVLDNL-GVA 120

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR--PTASVMIRA 179
            + F Q++ + RALEGE+A+TI S+  I  + V + +P    F         TASV +  
Sbjct: 121 ASDFQQQMAKKRALEGELAKTINSMDVIEKSSVALAIPAETVFADPKKPVATTASVTVEP 180

Query: 180 INPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI 237
                    + +AI ++V+A++PNL  G V+V+D+ G  L+      +            
Sbjct: 181 KKGREVDNNTVQAIVNMVSASIPNLAKGGVSVVDTAGNTLSDKVSAGSAAAT------ET 234

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY-DPDSKVERSIRLSKDAQR 296
           +  +       +   +GV N + +   EL  +T+Q    VY DP+  V++          
Sbjct: 235 EKSLVAKALAMVEPLVGVGNAKVSAHVELAQETEQKTTRVYTDPEGGVKQLSSSKASENY 294

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
           S        V    N+ +  + +       EN    +  +N  +N +   TT        
Sbjct: 295 SGGGAVVGGVLGPDNIGNPYELRNGNGGKYENN---QTVNNNAVNEELTNTTRSPGAAMS 351

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
            +I+VV+N+     +             + ++   V+AATGIN+ RGD I ++   F + 
Sbjct: 352 KTISVVLNQETARRLD------------MTQVRDSVAAATGINAARGDVINVSRAPFDDT 399

Query: 417 -QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
            Q       + +          T+I   V     +L+  +     ++     + +  ++G
Sbjct: 400 AQKAREKAAEEAAAAAERAKTTTLIRQAVIAGLIILLLIIIAAVAKKRAKAREREALDLG 459

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
               L  P   +      +  ++  +     +           I   +  + +  +  + 
Sbjct: 460 ELDQLPDPYTLTPPEEEALAIESAEVPEPEPEPEEEPEPELDPIMLKLEAKREE-IAELA 518

Query: 536 EINEERFAKILRKWA 550
               +  A+ LR W 
Sbjct: 519 LDKPQLVAEQLRAWM 533


>gi|298345990|ref|YP_003718677.1| flagellar M-ring protein FliF [Mobiluncus curtisii ATCC 43063]
 gi|304390252|ref|ZP_07372206.1| flagellar M-ring protein FliF [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|298236051|gb|ADI67183.1| flagellar M-ring protein FliF [Mobiluncus curtisii ATCC 43063]
 gi|304326734|gb|EFL93978.1| flagellar M-ring protein FliF [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 538

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 117/545 (21%), Positives = 215/545 (39%), Gaps = 33/545 (6%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
              SLG+  + I+   +L+   + + +  +V SP Y  LY  L   D   ++  L    I
Sbjct: 17  GQFSLGQKTLSIIGVAVLILGGVVLYS--WVASPDYTTLYSGLTDKDQAAVTEQLDSQGI 74

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
            ++++DNG  + VP+  V  AR+ LAA  LP+    SGY + D +     + F Q++ + 
Sbjct: 75  KYQVADNG-VVKVPAKDVQSARMSLAAADLPAQ-PTSGYAVLDNL-GVAASDFQQQMAKK 131

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR--PTASVMIRAINPSVY--KSA 188
           RALEGE+A+TI ++  I  + V + +P    F         TASV I   N       + 
Sbjct: 132 RALEGELAKTIDTMDDIDKSSVALAIPQETVFADPKKPVATTASVTITPKNRKDVSNDTV 191

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKA 248
           +AI ++VAA+VPNLD   VTV+D+ G  L+                  ++  +       
Sbjct: 192 QAIINMVAASVPNLDKTGVTVVDTLGNSLSDKVEGGAAAAS------EMEKSLVDKALAV 245

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVY-DPDSKVERSIRLSKDAQRSETSQPESAVT 307
           +   +G  N R +   +L+ D Q     VY DP+  V+     +   Q S        V 
Sbjct: 246 VEPLVGAGNARVSAQVDLSQDNQVKTTRVYTDPEGGVKPLSASNAAEQYSGGGAVVGGVL 305

Query: 308 VEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367
              N+ +  +       +  NT   +   N  +N +   +T       R S++VV+N+  
Sbjct: 306 GPDNIGNPYELNGNNGGNYTNTQNVQ---NNAVNEEVTQSTRAPGAALRKSVSVVLNQET 362

Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVS 427
              +             +A++  +V+AATGI++  GD + I+   F +     +      
Sbjct: 363 ARRLD------------MAQVRDMVAAATGIDAATGDVVNISRSPFDDTAKKAAEKAAAD 410

Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISS 487
                +      +     + G +++  + + A+ +       ++    G+    P P + 
Sbjct: 411 EAAAEAAAKTASLIRQAVIAGLIILLLIIIAAVAKKRAKAREREALDLGELDQLPDPYTL 470

Query: 488 AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR--LLHMIEINEERFAKI 545
           +           A     +         +   +  + K    R  +  +     +  A+ 
Sbjct: 471 SAPEEEALEIEAATIPEPEPEPEPEPEPEPEPDPILLKIEAKREEIAELALDKPQLVAEQ 530

Query: 546 LRKWA 550
           LR W 
Sbjct: 531 LRAWM 535


>gi|296125414|ref|YP_003632666.1| flagellar M-ring protein FliF [Brachyspira murdochii DSM 12563]
 gi|296017230|gb|ADG70467.1| flagellar M-ring protein FliF [Brachyspira murdochii DSM 12563]
          Length = 567

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 116/593 (19%), Positives = 224/593 (37%), Gaps = 75/593 (12%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVK-LEVSDV 60
            +  Q+   F   T+L +    +L  V++V +   +A     +      L+ + L   D 
Sbjct: 7   KLTSQIRNIFSKTTTLQK---AVLIGVLVVGLGAIIATIMLTSRKTGTLLFQQALTQEDA 63

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             +   L   NI ++   NG       +   +A + L  +G   +  + G+ELFD     
Sbjct: 64  RNVIAVLDANNIRYQYR-NGFITLNNQNDKARAELELVKEGRMPTGVD-GWELFDA-PRI 120

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           G+T    +I + R+L   I + +  +  +  A V +  P       I +  TASV+I+A 
Sbjct: 121 GITDVELDINKRRSLTKAITQLLTKLDFVQEATVDLAFPKKEYLTDIDSPVTASVVIKAQ 180

Query: 181 N-----PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-----ILGKS 230
                     K+   ++ L+A  V  L    VT+ DSTG +LT    E       +  + 
Sbjct: 181 PFKEDVLRDPKTVRGLQQLIAMGVDKLKPEFVTITDSTGYVLTDFTDEAANLKLKVAQEE 240

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---------- 280
           L IV   +  IE  I + L      +   + +  EL  D   I   +  P          
Sbjct: 241 LKIVDRERKNIENKIRQTLGRIY-TNRVETTIALELIWDDVSITNNLVLPIILKEDDPTT 299

Query: 281 -------DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKE 333
                   +KV+ S R   +  + +   P+ A   E+N+P     K    ++   TD ++
Sbjct: 300 PYDDSQFTNKVQVSSRTVTEDWKGQQFIPQGAAGAEENVPPGYKDKSDRWQTYTKTDSQD 359

Query: 334 EQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ-------------GK 380
              NYE++ +  A    +Y++ ++S AV ++ GR T+V   + D                
Sbjct: 360 ---NYELSKRYEAIKKGSYQIGKISAAVALD-GRWTKVYDVNGDPVITNGNSYVREYHPV 415

Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440
               +  +  +V AA G + +RGD +++T + F     FN+   ++    +  R     +
Sbjct: 416 TTEEIRNVTSLVQAAIGYDLKRGDQVSVTHIQFDHWDRFNAEDAKL----MRDRFIKKTL 471

Query: 441 NALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIA 500
              +  +  L V  L + A+++              +           +    M     A
Sbjct: 472 IITMISLLILFVLALVIRAIQK--------------ELARRRRLREEELERKQMEMRRQA 517

Query: 501 LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
           + ++N++  S        +     K+    ++ +     +  A++LR W   +
Sbjct: 518 MMNANEEPISEMS-----LEDAARKKLMDEVIRVSHERPDDVAQLLRTWMADD 565


>gi|213861543|ref|ZP_03386013.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 264

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 67/201 (33%), Positives = 109/201 (54%), Gaps = 5/201 (2%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 43  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 102

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 103 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 160

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +              A+ HLV++AV  L  G+VT++D +G LLT
Sbjct: 161 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 220

Query: 219 -ANEMERNILGKSLSIVQAIQ 238
            +N   R++    L     ++
Sbjct: 221 QSNTSGRDLNDAQLKFANDVE 241


>gi|330946121|gb|EGH47363.1| flagellar MS-ring protein [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 236

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 74/236 (31%), Positives = 118/236 (50%), Gaps = 4/236 (1%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92
           + +  A   +   P Y  LY  L   D  +I   L+ ANI++ +  N  ++ V S  V +
Sbjct: 1   MAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTLTAANINYTVEPNSGALLVKSDDVQR 60

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
           ARI LA  G+  S +N G+E+ DK    G + FM+     R LEGE+ARTI +++ +  A
Sbjct: 61  ARIQLAQAGVVQSDANIGFEILDKDQGLGTSQFMEATRYRRGLEGELARTISALNNVKGA 120

Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVL 210
           RVH+ +P    F +   +P+ASV++        +     AI +LVA +VP L    +TV+
Sbjct: 121 RVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEPSQVLAIINLVATSVPELSKSQITVV 180

Query: 211 DSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVA 264
           D  G LL+  A   E  + GK     + ++  +   +   L   LG D +++ V A
Sbjct: 181 DQKGTLLSDQAENSELTMAGKQFDYSRRMEGMLTQRVQNILQPILGNDRYKAEVSA 236


>gi|23099010|ref|NP_692476.1| flagellar MS-ring protein [Oceanobacillus iheyensis HTE831]
 gi|22777238|dbj|BAC13511.1| flagellar basal-body M-ring protein [Oceanobacillus iheyensis
           HTE831]
          Length = 532

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 110/568 (19%), Positives = 222/568 (39%), Gaps = 64/568 (11%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           D +  F+ S + + +  ++    +I++ I +     F   + +Y  LY  L   +  +I+
Sbjct: 10  DSVSSFWASRSKVQKGSVIGGFLLIILLIGVI---TFASTNTNYVPLYNNLSTQEAGQIT 66

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L    + F + +  S+I+VP   V    + LA+ GLP++ S   Y  F +  S+G+T 
Sbjct: 67  TELESRGVPFELENGRSTITVPEEQVDTLLLDLASMGLPNNGS-IDYSFFSENTSWGITD 125

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI-GARPTASVMIRAINPS 183
               + ++ A++ E+A  I+S+ GI  A+V I +P+   F        +AS+++      
Sbjct: 126 NEFNVMKLDAMQTELANLIKSVEGIQDAQVMINVPEEPVFATDVTGEASASIVLNTQPGY 185

Query: 184 VYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME---RNILGKSLSIVQAIQ 238
            ++    E + HLVA AVPNL   ++ +++   +    N  +   ++      ++ + ++
Sbjct: 186 QFEGNQIEGLHHLVAKAVPNLPEENIVIMNQYFEYFDQNTQQTANQDTYTHQQTVKKEVE 245

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-DSKVERSIRLSKDAQRS 297
            +I+  + + L   +G +N   +V A+++   +  +E + +P D +    + +S +  + 
Sbjct: 246 RDIQRRLQQMLGTMVGNENIVVSVTADIDFTQENRKEELVEPVDIENMEGLPVSLETIQE 305

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK----EEQSNYEINTKSIATTHDNYK 353
                 +A           +  VP   S +N D +    +E  NYE N          YK
Sbjct: 306 SYVGEGAAEAGTNEEVGTGEGDVPGYNSGDNGDGEYELDKETINYEFNRIRRDIVESPYK 365

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT--GINSRRG------DT 405
           L  L I V VN  R  +       Q +  S    IN I+++     I+          D 
Sbjct: 366 LRDLGIQVAVNNTRSVDNELEYLSQQEQTSVEEGINSILNSIITSSIDGEYNQDLVPDDK 425

Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465
            +I   +F E    ++                T I   +++V                  
Sbjct: 426 TSIVFQEFTETTTPSAE-------------GTTGIPTWLYVV------------------ 454

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
                     G  +L    +   +      +D +       +  +   +L  +  S  + 
Sbjct: 455 ---------AGILLLIIIVLLFFLIRNRKTSDEVVDQYEEINEQTPIPDLPEKEESE-AT 504

Query: 526 QSDLRLLHMIEINEERFAKILRKWARSE 553
               +L  + +   E FAK+LR W   +
Sbjct: 505 IRRKQLEKIAKEKPEDFAKLLRSWIGED 532


>gi|323490142|ref|ZP_08095362.1| flagellar MS-ring protein [Planococcus donghaensis MPA1U2]
 gi|323396190|gb|EGA89016.1| flagellar MS-ring protein [Planococcus donghaensis MPA1U2]
          Length = 546

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 102/565 (18%), Positives = 212/565 (37%), Gaps = 55/565 (9%)

Query: 12  KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71
           +S TS        +     + +++     FF N  ++  LY  L  ++   I  A+    
Sbjct: 14  ESWTSFSPVTKWSVIGSFFLTLIILGVFVFFSNQSNFSVLYSDLTPAEAGEIKTAIEAQA 73

Query: 72  IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131
           I   +S +G +ISVP   +   ++ LAA+G+P +  N  Y  F +    G+T    ++  
Sbjct: 74  IPVEVSSDGKTISVPEEHLANLKVSLAAEGIPKNG-NVNYGTFSENMGLGMTDRHFDVVE 132

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAINPSV--YKSA 188
             A++ E+A  I+ I G+  A V I +P    +     +  TAS++++  +      K  
Sbjct: 133 RDAMQNELAYLIKQIDGVTEANVMITLPKENIWITDEEQTSTASIVVKGDSTLQLDQKQI 192

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSLSIVQAIQHEIEM 243
             + HL++ +VP+L    + ++D  G++    +  +     ++  +   I + I+ +I+ 
Sbjct: 193 NGLYHLISKSVPSLPADQIVIMDQNGQVFEVQDENQLDTNLSVYQQHREIQKGIEQDIQR 252

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIRLSKDAQRSE 298
            + + L   LG D    +V+  ++   ++  E + +P     +  ++ S+    +   SE
Sbjct: 253 ELQQMLGLLLGQDKVVVSVMTNIDFTKEKREEQLVEPVDVENNKGLDISVERIIETYSSE 312

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
               E A    +    V++           +++ EE+ N E+N  +       Y ++ ++
Sbjct: 313 GVVIEDAAGTGET--EVANYPGVDGTGNSESERTEERINSEVNRINRQIEMSPYVIDDIT 370

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG----------DTITI 408
           I V V      E              + +I+ ++  A   +              D I++
Sbjct: 371 INVGV------EPPIPDNPASLSQENITDISNLLKNAVSTSLSMNEVQATEIELEDRISV 424

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
            + +F           +V+F+  +  +   VI A + LV  ++V                
Sbjct: 425 FATEFQGRPDIVEEEPEVTFLTGIPNNLLMVIGAAIVLVMIIVV---------------- 468

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
                     +     +              AL  SNQ          S  +S  S    
Sbjct: 469 ------ALLLLRKKKKVDVEEEEYSFEGFEQALAKSNQVEIEEEEIDLSEFSSR-SNPKR 521

Query: 529 LRLLHMIEINEERFAKILRKWARSE 553
             +  + +   E F K+LR W   +
Sbjct: 522 KTIEKLAKGRPEDFTKLLRSWMADD 546


>gi|85710179|ref|ZP_01041244.1| flagellar M-Ring protein [Erythrobacter sp. NAP1]
 gi|85688889|gb|EAQ28893.1| flagellar M-Ring protein [Erythrobacter sp. NAP1]
          Length = 547

 Score =  244 bits (622), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 109/549 (19%), Positives = 199/549 (36%), Gaps = 60/549 (10%)

Query: 21  RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80
           +  + A V L+ +++  A  F +       LY  L   +  ++  AL    I + I ++ 
Sbjct: 41  QRALAALVGLIAVVVAGALYFAIAQGPQRILYSDLSDVERAKVVQALETGGIGYAIDNST 100

Query: 81  SSISVPSSMVGKARIHLAAQ-GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEI 139
            +I+V  + + +AR+ +A+  GL   ++  G          G +  ++      A E E+
Sbjct: 101 GAITVAETDLYRARMLVASDTGL---AAPEGASAMLDAIPLGSSRTLEGERLRLAREREL 157

Query: 140 ARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAA 197
             TI+ I GI + RVH+  P+  +F +    P+ASVM+R ++         EAI +LV+ 
Sbjct: 158 MLTIREIDGIESVRVHLATPERSAFVRENNPPSASVMVRLVSGRSLGRSQVEAIVNLVSG 217

Query: 198 AVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDN 257
           +VP L    V V+D  G+LL+A   E       L + +  + ++   +   LA  LG  N
Sbjct: 218 SVPGLTPDKVRVVDQNGRLLSAAREE---ALGGLVLQREFEAKLREQLGTLLAPLLGEGN 274

Query: 258 FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSD 317
           F S V  EL  +        YD +  V RS    + A R           V  N P    
Sbjct: 275 FSSQVQVELEQEESTSARESYDREG-VIRSE-SERSATRMAGGAVGGIPGVAANTPPPDA 332

Query: 318 RKVPLP---------RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368
           + V  P         ++ +   +   Q NYE+  +   T+     L +LS         +
Sbjct: 333 QLVDGPPEATAVDGEQAADRDQEVSTQRNYELGREVAVTSTRPGGLVKLS---------V 383

Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSF 428
              +  +A          ++  ++SAA G +  RGDT+ +    F   Q       +  +
Sbjct: 384 AVAVSDAALAAAAPMTAEQLQSLISAAVGADEGRGDTVEVVVSAFENAQTQPLAFYEQKW 443

Query: 429 MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSA 488
              + R+   +I                         +          K +  P   ++ 
Sbjct: 444 FADVLRYATALIA----------------------VLLVLLLGVRPLVKRLREPSAAAAE 481

Query: 489 VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRK 548
           + +     D  A D         S     ++              +     +R  + L++
Sbjct: 482 LASDEGEGDETAYDQQQIAEEPVSDAFPQKVELA---------RQLAASQPDRAVEALQR 532

Query: 549 WARSEIEDR 557
                 E +
Sbjct: 533 MLDVSAETK 541


>gi|289678988|ref|ZP_06499878.1| flagellar MS-ring protein [Pseudomonas syringae pv. syringae FF5]
          Length = 395

 Score =  243 bits (621), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 81/415 (19%), Positives = 158/415 (38%), Gaps = 64/415 (15%)

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHE 240
                  AI +LVA +VP L    +TV+D  G LL+  A   E  + GK     + ++  
Sbjct: 2   REPSQVLAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGM 61

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE-- 298
           +   +   L   LG D +++ V A ++    +     ++PD    RS +   + + S   
Sbjct: 62  LTQRVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNEQRSSSSS 121

Query: 299 --------TSQPESAVTV----------------------EQNMPHVSDRKVPLPRSLEN 328
                   ++QP    T                       + N   + D     P     
Sbjct: 122 SGGVPGALSNQPPGPATAPQTAGAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPY 181

Query: 329 TDKK--EEQSNYEINTKSIATTHDNYKLERLSIAVVVNK-GRLTEVLGRSADQGKIDSYL 385
              K  +   N+E++     T     +L RLS+AVVV+   +     G  +      + L
Sbjct: 182 PADKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVSRAPWSAADL 241

Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVIN 441
           A   ++V  A G ++ RGD++++ ++ F   +           Q  F DI+ +       
Sbjct: 242 ARFTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYSQPWFWDIVKQ------- 294

Query: 442 ALVFLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIA 500
                VG + +  L    LR  L+NI + K+ E+ G    +       +  G + ND ++
Sbjct: 295 ----AVGVIFILILVFGVLRPVLNNITNGKRKELAGFGGDAELGGMGGL-DGELSNDRVS 349

Query: 501 LDSSNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
           L      +  S +    +++N+         +  ++  +  R A+++++W  ++ 
Sbjct: 350 LGGPQSILLPSPTEGYDAQLNA---------IKSLVAEDPGRVAQVVKEWINTDE 395


>gi|239815256|ref|YP_002944166.1| flagellar M-ring protein FliF [Variovorax paradoxus S110]
 gi|239801833|gb|ACS18900.1| flagellar M-ring protein FliF [Variovorax paradoxus S110]
          Length = 502

 Score =  243 bits (620), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 110/527 (20%), Positives = 195/527 (37%), Gaps = 49/527 (9%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           + F++  T   R   + L   +L  ++   AA ++V    Y  L+  L+  D   ++  L
Sbjct: 1   MNFWQGLTQRAR---IGLVGGVLAIVLAMSAAAWWVFHTEYQVLFADLKPQDAQAMTTEL 57

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
               I +R+ D+G+SI V  + V   RI L  + LP   +  G ELF+  + FG+T F Q
Sbjct: 58  DRLKIPYRLGDSGTSILVDKATVHATRIKLMGKELPLQGT-VGLELFNNTD-FGMTEFAQ 115

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY-- 185
           +I   RAL+GE+ RTIQS++ +   RV + +P+ G F++  ++  AS+ +          
Sbjct: 116 KINYQRALQGELTRTIQSLAQVREVRVLLALPEQGLFKQATSKAKASITLTLRQGQTLRA 175

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIE 242
           +    ++ LVAAAVP +   DVT++DS G  LT  E            L + +  +  + 
Sbjct: 176 EQVTGVQRLVAAAVPGMATQDVTIVDSHGVALTRAEGSSGELETSSARLDLKRDTEAYLS 235

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
             +   L    G     ++V   LNMD  +       P +            +  ET + 
Sbjct: 236 RKVAAVLDRSFGAGQALASVDVMLNMDQIRTTTEDVLPAATRSGLQSTGVVVRERETLRD 295

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
             A              V  PRS       +    Y +  +          + R+ +  V
Sbjct: 296 AGAAL------DARASDVGGPRSGS----AQRDVEYAVGRRVEQVVSQQGSIRRIQVVAV 345

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD---------- 412
           V              +    +   ++ K+++AA G +  RGDTI + S+           
Sbjct: 346 V-------------RKTLDAAQEDQLRKVIAAAAGASIERGDTIVVQSLAGSAMLAPDAA 392

Query: 413 ------FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
                                  + L +   T +  L+      ++    L A RR   +
Sbjct: 393 AGAAAAAHAALTSEESDEAPVSSNSLDKASPTPVQWLLGGALITMLAVWLLRAGRRGVAV 452

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR 513
            +A +G            +         P  +    +      + +R
Sbjct: 453 REASQGAASLSEAERAAALRRVRDWMREPMSSAPAGNPAAPGPTGAR 499


>gi|326204626|ref|ZP_08194482.1| flagellar M-ring protein FliF [Clostridium papyrosolvens DSM 2782]
 gi|325985193|gb|EGD46033.1| flagellar M-ring protein FliF [Clostridium papyrosolvens DSM 2782]
          Length = 524

 Score =  243 bits (619), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 99/562 (17%), Positives = 209/562 (37%), Gaps = 54/562 (9%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +L  LL F+K      +TRI I+  +++V + + +   F +  P Y  +       +V  
Sbjct: 8   LLKPLLDFWKGLDKSQKTRIFIITGIVVVSVSIGL---FLITRPTYTTVINNASTEEVAA 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +   L E  I ++++++ S I V      +A   LA     +  S +G    D +++  +
Sbjct: 65  MQKILKEKGISYKLTEDKSGIIVNEKDSDEAHFELA-----TGYSKNGLTFADALSNIKI 119

Query: 123 TSFMQEITRVRAL--EGEIARTIQSISGIVAARVHIVMPDMGSFRKIG--ARPTASVMIR 178
            +   +   +     E +IAR +     I  A V IV P+              ASV+I 
Sbjct: 120 NTTESDKKHIWQQLDESDIARQLMHFQNIENADVTIVRPEKTLLIDDNNSKDAKASVVIT 179

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-NILGKSLSIVQAI 237
             +    K AE+I  +VA++V  LD  +VTV+D+ G +L  +  +          + +  
Sbjct: 180 PKDEISAKQAESIVKIVASSVEGLDPKNVTVVDNKGNVLNTDSGDGIEKTSTQYDMKKKY 239

Query: 238 QHEIEMNINKALAAFLG-VDNFRSAVVAELNMDTQQIREIVY-DPDSKVERSIRLSKDAQ 295
           ++++E N+ + L   L   D  +  V   L+ DT       Y +P+     +I   ++ +
Sbjct: 240 KNDLEKNVKEVLVGQLDSFDTAKVVVNPVLDFDTLTQSSKEYTNPNGADSGAITSRQETK 299

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL- 354
            +  +          + P  +        S ++ +K +   N++ N  +  +     +L 
Sbjct: 300 ENLKNGDTGGTPGVNSNPGTTPSYPAGSDSSKSYNKSDVTENFQYNETNKQSEKSLGELI 359

Query: 355 -ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
            E+ S A+ +  G       +       D  + ++  + S ATG        I + ++  
Sbjct: 360 PEKSSAAITLLYGNRVADDSK-----LNDEMITQVKNLTSRATG--------IPVENIAV 406

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
            + ++      + S  D L    ++     +  +  +    + L                
Sbjct: 407 SKLKIQPPVVEKPSTADTLKSLISSYGLLALLALMAIAFVIIAL---------------- 450

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
                   P      +      +D+ AL SS         +    I++    +   ++  
Sbjct: 451 --------PKKSKQKLEPAFAIDDDTALTSSKFAYSDMRPDPVPEIDTEERSEVKKQIDK 502

Query: 534 MIEINEERFAKILRKWARSEIE 555
            ++   +  A++LR W   + E
Sbjct: 503 FVKQKPDAVAQLLRNWLTDDYE 524


>gi|315654577|ref|ZP_07907483.1| flagellar M-ring protein [Mobiluncus curtisii ATCC 51333]
 gi|315491041|gb|EFU80660.1| flagellar M-ring protein [Mobiluncus curtisii ATCC 51333]
          Length = 453

 Score =  243 bits (619), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 104/406 (25%), Positives = 178/406 (43%), Gaps = 31/406 (7%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
              SLG+  + I+   +L+   + + +  +V SP Y  LY  L   D   ++  L    I
Sbjct: 17  GQFSLGQKTLSIIGVAVLILGGVVLYS--WVASPDYTTLYSGLTDKDQAAVTEQLDSQGI 74

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
            ++++DNG  + VP+  V  AR+ LAA  LP+    SGY + D +     + F Q++ + 
Sbjct: 75  KYQVADNG-VVKVPAKDVQSARMSLAAADLPAQ-PTSGYAVLDNL-GVAASDFQQQMAKK 131

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR--PTASVMIRAINPSVY--KSA 188
           RALEGE+A+TI ++  I  + V + +P    F         TASV I   N       + 
Sbjct: 132 RALEGELAKTIDTMDDIDKSSVALAIPQETVFADPKKPVATTASVTITPKNRKDVSNDTV 191

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKA 248
           +AI ++VAA+VPNLD   VTV+D+ G  L+                  ++  +       
Sbjct: 192 QAIINMVAASVPNLDKTGVTVVDTLGNSLSDKVEGGTAAAS------EMEKSLVDKALAV 245

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVY-DPDSKVERSIRLSKDAQRSETSQPESAVT 307
           +   +G  N R +   +L+ D Q     +Y DP+  V+     +   Q S        V 
Sbjct: 246 VEPLVGAGNARVSAQVDLSQDNQVKTTRIYTDPEGGVKPLSASNAAEQYSGGGAVVGGVL 305

Query: 308 VEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367
              N+ +  +       +  NT   +   N  +N +   +T       R S++VV+N+  
Sbjct: 306 GPDNIGNPYELNGNNGGNYTNTQNVQ---NNAVNEEVTQSTRAPGAALRKSVSVVLNQET 362

Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
              +             +A++  +V+AATGI++  GD + I+   F
Sbjct: 363 ARRLD------------MAQVRDMVAAATGIDAATGDVVNISRSPF 396


>gi|150020374|ref|YP_001305728.1| flagellar M-ring protein FliF [Thermosipho melanesiensis BI429]
 gi|149792895|gb|ABR30343.1| flagellar M-ring protein FliF [Thermosipho melanesiensis BI429]
          Length = 489

 Score =  242 bits (618), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 100/521 (19%), Positives = 198/521 (38%), Gaps = 45/521 (8%)

Query: 43  VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSS-MVGKARIHLAAQG 101
           +N+P Y  L      +D   I   L  + I +++   G+ I +PSS  V + R+ LA+ G
Sbjct: 1   MNAPRYVLLITANNETDAGAIVQQLESSGIPYKVEA-GNRILIPSSYNVYEVRMKLASSG 59

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           +  +SS  G+E+ D+  SFG TSF +++   RAL+GE+ RTI +I+G+  ARVH+ +P  
Sbjct: 60  ILGASSK-GFEILDQT-SFGATSFDKQVNYQRALQGELERTIATINGVKYARVHLTLPKY 117

Query: 162 GSFRK-IGARPTASV--MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
             + +   A   ASV  ++        +  + I +L+  AV  L   +V V+D+ G+ L+
Sbjct: 118 TYYVRGDMAETRASVQLVLEPGASLSKEQVKGIIYLLTGAVEGLKPENVKVVDNFGRALS 177

Query: 219 A---NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
                +           +   ++      I  AL A  G+          LN    +   
Sbjct: 178 DLVNFDENTYAASTKAELKMQLERYYRSKIQPALEAVFGLGKVEVITDINLNWQKTEKTI 237

Query: 276 IVY-DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEE 334
             Y  P     RS + ++  + +        V  E N+P    + +    S    +KK E
Sbjct: 238 TTYSSPKGGFIRS-KETESEKSTTFPSDGGPVGTESNIPTTYYQSLESSNSTL-YEKKHE 295

Query: 335 QSNYEINTKSIATTHDN-YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE-INKIV 392
            +NYE+N        +   ++E +          +      +       + + + +  ++
Sbjct: 296 ITNYELNQIVENIVQNTEGEIENI-------SVSVIIDSSSTVFNKVSKNEINKMVADVI 348

Query: 393 SAATGINSRRGDTITIT-SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLL 451
             +   N+       I+ S+ F+          Q       ++    +I  +  L+   +
Sbjct: 349 QKSIAANASPS---NISYSLAFIPFSRELEEQYQKLIQSEQTK--KDIIFKISLLLIATV 403

Query: 452 VTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSH 511
           + F   + +  L  I  +K  ++  +        +  +       +   + S  Q +   
Sbjct: 404 LMFFSSYGI--LLQIRKSKARKLVLQRYKMLEEEARKLVEKEGQEEAEEILSEAQKVIEE 461

Query: 512 SRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
            +N   +               +   + E  A I++ W   
Sbjct: 462 LKNYAQQ---------------LAVKSPEETAAIIKIWLSE 487


>gi|150388445|ref|YP_001318494.1| flagellar M-ring protein FliF [Alkaliphilus metalliredigens QYMF]
 gi|149948307|gb|ABR46835.1| flagellar M-ring protein FliF [Alkaliphilus metalliredigens QYMF]
          Length = 517

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 109/563 (19%), Positives = 220/563 (39%), Gaps = 63/563 (11%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            I +QL ++ +    L + + + +    L  ++      +F + P Y  LY  L   +  
Sbjct: 7   QIRNQLNEYIQG---LDKNKKIKIGLSALFILISLTGIIYFFSRPDYVVLYNNLNPEESG 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            +   L  +NI     D   +I V      +A++ +A QGLP++  +  YE     NS+ 
Sbjct: 64  SVMETLQGSNIRADFGDTSGTILVRKQDEKRAQVVVATQGLPTARFS--YEDAFSGNSWM 121

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMIRA 179
           +TS  +    + A +  +A T++ I G+  A V++ +P+   F      A   ASV +  
Sbjct: 122 MTSEERAQRILIAQQNYLASTMEEIPGVSKAVVNLTIPERTGFMMADNNANAKASVWLDI 181

Query: 180 INPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIV 234
            + +  +  S + I  LV+ AV  L+  +VT+    G++L       +        +++ 
Sbjct: 182 SSNANLESGSIKGIAILVSNAVQGLEPENVTIHGPDGRVLNQEAGSDSSLLGASDQMNLQ 241

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP--DSKVERSIRLSK 292
           QA+Q ++E +I   L++  G  N        L  D+     + + P  + +    IR   
Sbjct: 242 QAVQKDLEKSITDFLSSVYGHGNVVVMAGVRLGFDSNVTELVEFAPPIEGQETGIIRSMH 301

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
           +   +    P   +           + V     L   D+  +  NYEIN         + 
Sbjct: 302 ELTHTAIDGPGGGIPGVDPNVGDIPQNVEDDEYLSRYDEASQTINYEINELRQKIVKAHG 361

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
           ++  +S+AV VNK  L       AD    D    E+  IVSAA G+++R    + +   +
Sbjct: 362 QVHDISVAVYVNKSTL-------ADGDLSDQERRELINIVSAAAGLDTR---VVQVGVQE 411

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV--TFLGLHALRRLHNIDDAK 470
           F ++    +   Q++    L+         L+ L+ TL++   ++ ++ +R+  + ++  
Sbjct: 412 FNDS---LADQWQLAMDGNLAAGEGGQPWWLIGLLATLILGAAYIVINKVRKNRSQEEE- 467

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
                                 ++  D +  D   +     S             Q   +
Sbjct: 468 ----------------------ILVQDVMIPDELEEINLDLSG-----------SQVKQQ 494

Query: 531 LLHMIEINEERFAKILRKWARSE 553
           +  ++    +  A++L+ W   E
Sbjct: 495 IEKLVNKKPDAVAQMLKNWINEE 517


>gi|251797445|ref|YP_003012176.1| flagellar MS-ring protein [Paenibacillus sp. JDR-2]
 gi|247545071|gb|ACT02090.1| flagellar M-ring protein FliF [Paenibacillus sp. JDR-2]
          Length = 527

 Score =  241 bits (614), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 112/565 (19%), Positives = 223/565 (39%), Gaps = 61/565 (10%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
             +L QF+     +G+ + + L + I   ++  +   +      Y+  +  L+ +D   I
Sbjct: 9   RQRLTQFWG---QMGKKQKIGLGASIGALLLTIVILTYIFTRTDYEVAFQNLDTTDAAAI 65

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    I +++S +G SISVPS++  + R+ + +QGL  + S  G+E F+  ++FG T
Sbjct: 66  MTYLDGNGIPYKLSADGQSISVPSAVATRTRVDVGSQGLVQNGS-IGFEAFEGGSAFGQT 124

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARPTASVMIRAIN 181
                +  + AL GE+ + +  + G+ +++V I +P    F   +   + +AS+M+    
Sbjct: 125 ENEFNVKYINALNGEVQQLLNRMQGVQSSKVLINLPKESVFLTPEEKEQASASIMMNFTP 184

Query: 182 PSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER------NILGKSLSI 233
                    +   +LV  AVP L + D+T+    G+L+++           +       I
Sbjct: 185 GYRPSQQEVDGYYNLVKTAVPKLAVQDITISSPQGELVSSEIDGNKIGAATDAAESHFMI 244

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-DSKVERSIRLSK 292
            +  + E++ NI + L+  LG DN   +V +  N D +  +E +  P ++     I +S+
Sbjct: 245 QRKYEAEVKKNIQQFLSPMLG-DNLVISVASSFNFDKKVTQENLVRPLENNNNNGIIVSE 303

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ----SNYEINTKSIATT 348
               S T+   +       +    +  VP   + +NT+   EQ    +NY+ +  +    
Sbjct: 304 QQDNSTTTNGSANAG---GVAGTGETDVPGYTATDNTNGSSEQSSRVTNYDYDRINNQIE 360

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
              Y+L+ LSI++ V + +LT+   +           A++          ++     +TI
Sbjct: 361 SAPYQLKDLSISIGVEQSKLTDQSRQELTNFLSSLVRAQLADSGQD-VNDDAMIAKKVTI 419

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
              +F      ++GT         +        AL+  +  +LV        RR    ++
Sbjct: 420 LGQNFAAT---DAGTSSSGLSMQWAIGLGAAALALIGGLTVMLV-------RRRRKQAEE 469

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
           A   E          P    +    + ND+                           Q+ 
Sbjct: 470 AAAAEAAAMMETQAKPEFPTIDFETVNNDS---------------------------QAR 502

Query: 529 LRLLHMIEINEERFAKILRKWARSE 553
             L  + +   E F  +LR W   E
Sbjct: 503 KNLETLAKRKPEEFVNLLRTWLVDE 527


>gi|327441055|dbj|BAK17420.1| flagellar biosynthesis/type III secretory pathway lipoprotein
           [Solibacillus silvestris StLB046]
          Length = 531

 Score =  240 bits (613), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 99/561 (17%), Positives = 196/561 (34%), Gaps = 61/561 (10%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
           F++S T   + +   L    +  I +  A  +F        L+ ++  ++V RI+  L+ 
Sbjct: 15  FWQSRT---KNQKGALIGAFVAVIAIAAAITYFSTRTTMAQLFPEMSQAEVGRITEVLAS 71

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
             + + +++ G+ I VP + V   ++ LAAQG P S        F     FG+T     +
Sbjct: 72  QGVKYEVTNGGTVILVPENQVQDLQVSLAAQGYPDSG-EIDTSFFTSNAGFGMTDNEFNV 130

Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA-RPTASVMIRAINPS--VYK 186
            +   +E ++A  ++   G+  A V I +P+ G F K       A++++           
Sbjct: 131 IKQATIETDLANLVRKFEGVKDASVMITLPEEGVFLKDAKGEAQAAIVLDTAPGHKFSDD 190

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSLSIVQAIQHEI 241
             + + +LV+ ++PNL   ++T+++   +       E    G       + + + I+ ++
Sbjct: 191 QIKGLFNLVSMSIPNLPKENITIMNQYSEYYDLASAENGDGGIDSVTGQMEVKKTIERDL 250

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD-----SKVERSIRLSKDAQR 296
           +  + + L   +G D     V A+++   +   E +  P        +E S +   +   
Sbjct: 251 QRQVQQMLGTLIGPDKVVVNVSADIDFKKENREENLVRPVDEENMEGIEISAQRITETYS 310

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
              +      T   ++       V       + ++ EE  N ++N          YK+  
Sbjct: 311 GGAAGAAEGTTEAGSVTDNFVDYVEGTNGDGDYERVEETINNDVNRIRREIQESPYKIRN 370

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI--NKIVSAATG--INSRRGDTITITSMD 412
           L I V+V+     E   +      I+  L+ I    I   A G   +    + I ++   
Sbjct: 371 LGIQVMVDPPNTEEGFDQGVRTD-IEQILSTIVRTSIDQEAAGNLTDEDIANRIVVSVQQ 429

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F  N         V    +        +   + +V  +L+    L A RR          
Sbjct: 430 FQGNDTAEDQPQSVIPWWVW-------VIGGILVVAIILLVINFLRARRR---------- 472

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
                                   D   L    Q          S      +     +L 
Sbjct: 473 ----------------------KQDEEELGILEQQQQLIEIEDISEEKETEATVRRKQLE 510

Query: 533 HMIEINEERFAKILRKWARSE 553
            M +   E FAK+LR W   +
Sbjct: 511 KMAKDKPEDFAKLLRSWIAED 531


>gi|150390487|ref|YP_001320536.1| flagellar M-ring protein FliF [Alkaliphilus metalliredigens QYMF]
 gi|149950349|gb|ABR48877.1| flagellar M-ring protein FliF [Alkaliphilus metalliredigens QYMF]
          Length = 517

 Score =  240 bits (612), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 109/563 (19%), Positives = 220/563 (39%), Gaps = 63/563 (11%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            I +QL ++ +    L + + + +    L  ++      +F + P Y  LY  L   +  
Sbjct: 7   QIRNQLNEYVQG---LDKNKKIKIGLSALFILISLTGIIYFFSRPDYVVLYNNLNPEESG 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            +   L  +NI     D   +I V      +A++ +A QGLP++  +  YE     NS+ 
Sbjct: 64  SVMETLQGSNIRADFGDTSGTILVRKQDEKRAQVVVATQGLPTARFS--YEDAFSGNSWM 121

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMIRA 179
           +TS  +    + A +  +A T++ I G+  A V++ +P+   F      A   ASV +  
Sbjct: 122 MTSEERAQRILIAQQNYLASTMEEIPGVSKAVVNLTIPERTGFMMADNNANAKASVWLDI 181

Query: 180 INPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIV 234
            + +  +  S + I  LV+ AV  L+  +VT+    G++L       +        +++ 
Sbjct: 182 SSNANLESGSIKGIAILVSNAVQGLEPENVTIHGPDGRVLNQEAGSDSSLLGASDQMNLQ 241

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP--DSKVERSIRLSK 292
           QA+Q ++E +I   L++  G  N        L  D+     + + P  + +    IR   
Sbjct: 242 QAVQKDLEKSITDFLSSVYGHGNVVVMAGVRLGFDSNVTELVEFAPPIEGQETGIIRSMH 301

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
           +   +    P   +           + V     L   D+  +  NYEIN         + 
Sbjct: 302 ELTHTAIDGPGGGIPGVDPNVGDIPQNVEDDEYLSRYDEASQTINYEINELRQKIVRAHG 361

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
           ++  +S+AV VNK  L       AD    D    E+  IVSAA G+++R    + +   +
Sbjct: 362 QVHDISVAVYVNKSTL-------ADGDLSDQERRELINIVSAAAGLDTR---VVQVGVQE 411

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV--TFLGLHALRRLHNIDDAK 470
           F ++    +   Q++    L+         L+ L+ TL++   ++ ++ +R+  + ++  
Sbjct: 412 FNDS---LADQWQLAMDGNLAAGEGGQPWWLIGLLATLILGAAYIVINKVRKNRSQEEE- 467

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
                                 ++  D +  D   +     S             Q   +
Sbjct: 468 ----------------------ILVQDVMIPDELEEINLDLSG-----------SQVKQQ 494

Query: 531 LLHMIEINEERFAKILRKWARSE 553
           +  ++    +  A++L+ W   E
Sbjct: 495 IEKLVNKKPDAVAQMLKNWINEE 517


>gi|218508689|ref|ZP_03506567.1| flagellar MS-ring protein [Rhizobium etli Brasil 5]
          Length = 332

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 146/360 (40%), Positives = 209/360 (58%), Gaps = 37/360 (10%)

Query: 205 GDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVV 263
            DVT+LDS G+LL + +E   + L +SL+IVQ +Q E+E NI+KALA FLG+DNFRS+V 
Sbjct: 1   DDVTILDSAGQLLASGDEASNSSLNRSLNIVQNVQQEVESNIDKALAPFLGMDNFRSSVT 60

Query: 264 AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSD--RKVP 321
           A+LN D QQI+E  YDP+SKVERS+R +K+AQ+S+  Q ++A TVEQN+P  +       
Sbjct: 61  ADLNTDAQQIQETTYDPESKVERSVRSTKEAQQSQQKQSDNATTVEQNIPQAAPDAGGAS 120

Query: 322 LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI 381
            P S + +DK+EEQ +Y+IN+++ ATT ++YK+E+LSIAVVVN                 
Sbjct: 121 GPESQDKSDKREEQIHYDINSRTTATTRNSYKVEKLSIAVVVN----------------- 163

Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441
                      ++A GI+++RGD +T+T+MDFLENQL    T  V  MD+LSR+ A +IN
Sbjct: 164 -----------TSAAGIDAKRGDVVTVTAMDFLENQLLEDATGGVRVMDMLSRNLAGIIN 212

Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDA------KKGEVGGKSILSPPPISSAVTTGLMP 495
           +L F+    +V ++GL  L R  + + A         E  G  +    P   A    LM 
Sbjct: 213 SLAFVAVAFVVVWMGLRPLVRSVSGNGASAVLGDATPEAAGLELPDFAPAVGAPGGALMD 272

Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
                    + +      +     N  V +  + +L  M+EINEER AKILRKWA  +  
Sbjct: 273 GFGSDFGFDSTEDLLSLGDDDGNFNRRVKEGPERKLARMVEINEERAAKILRKWAIDDAA 332


>gi|326411311|gb|ADZ68375.1| flagellar MS-ring protein [Brucella melitensis M28]
          Length = 239

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 114/234 (48%), Positives = 151/234 (64%), Gaps = 3/234 (1%)

Query: 4   LDQLLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
             QL++  K     LG  +++ L  V    +   +    ++  P Y+ LYV L   DVNR
Sbjct: 7   FQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVNR 66

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           + +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S GL
Sbjct: 67  MGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGL 125

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           TSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA   
Sbjct: 126 TSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGG 185

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQ 235
              +SA++IR LVAAAVP+LD   VTVLD+ G LL +A E        + S+ Q
Sbjct: 186 FSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQ 239


>gi|17988495|ref|NP_541128.1| flagellar M-ring protein FLIF [Brucella melitensis bv. 1 str. 16M]
 gi|265998972|ref|ZP_05464502.2| flagellar M-ring protein FliF [Brucella melitensis bv. 2 str. 63/9]
 gi|17984286|gb|AAL53392.1| flagellar m-ring protein flif [Brucella melitensis bv. 1 str. 16M]
 gi|263091454|gb|EEZ15990.1| flagellar M-ring protein FliF [Brucella melitensis bv. 2 str. 63/9]
 gi|326554600|gb|ADZ89239.1| flagellar MS-ring protein [Brucella melitensis M5-90]
          Length = 242

 Score =  237 bits (604), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 114/234 (48%), Positives = 151/234 (64%), Gaps = 3/234 (1%)

Query: 4   LDQLLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
             QL++  K     LG  +++ L  V    +   +    ++  P Y+ LYV L   DVNR
Sbjct: 10  FQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVNR 69

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           + +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S GL
Sbjct: 70  MGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGL 128

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           TSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA   
Sbjct: 129 TSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGG 188

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQ 235
              +SA++IR LVAAAVP+LD   VTVLD+ G LL +A E        + S+ Q
Sbjct: 189 FSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQ 242


>gi|256042874|ref|ZP_05445820.1| flagellar M-ring protein FLIF [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256112169|ref|ZP_05453090.1| flagellar M-ring protein FLIF [Brucella melitensis bv. 3 str.
           Ether]
          Length = 237

 Score =  237 bits (604), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 114/234 (48%), Positives = 151/234 (64%), Gaps = 3/234 (1%)

Query: 4   LDQLLQFFKS-GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
             QL++  K     LG  +++ L  V    +   +    ++  P Y+ LYV L   DVNR
Sbjct: 5   FQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVNR 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           + +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S GL
Sbjct: 65  MGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGL 123

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           TSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA   
Sbjct: 124 TSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGG 183

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQ 235
              +SA++IR LVAAAVP+LD   VTVLD+ G LL +A E        + S+ Q
Sbjct: 184 FSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQ 237


>gi|225619610|ref|YP_002720867.1| flagellar MS-ring protein [Brachyspira hyodysenteriae WA1]
 gi|225214429|gb|ACN83163.1| flagellar MS-ring protein [Brachyspira hyodysenteriae WA1]
          Length = 542

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 113/571 (19%), Positives = 219/571 (38%), Gaps = 72/571 (12%)

Query: 24  ILASVILVPIMLFMAARFFVNSPHYDNLYVK-LEVSDVNRISVALSEANIDFRISDNGSS 82
           +L  ++++ +   +A     +      L+ + L   D   +   L   NI ++   NG  
Sbjct: 1   MLIGILVIGLGAIIATIVLTSRRTGTLLFQQALTQEDARNVIAVLDANNIRYQYR-NGFI 59

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
                +   KA + L  +G   +  + G+ELFD     G+T    +I + R+L   I + 
Sbjct: 60  TLNSEADKAKAELELVKEGRMPTGVD-GWELFDA-PRIGITDVELDINKRRSLTKAITQL 117

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN-----PSVYKSAEAIRHLVAA 197
           +  +  +  A V +  P       I +  TASV+I+A           K+   ++ L+A 
Sbjct: 118 LTKLDFVQEATVDLAFPKKEYLTDIDSPVTASVVIKAQPFKEEVLRDPKTVRGLQQLIAM 177

Query: 198 AVPNLDMGDVTVLDSTGKLLTANEMERN-----ILGKSLSIVQAIQHEIEMNINKALAAF 252
            V  L    VT+ DSTG +LT    E       +  + L IV   + +IE  I + L   
Sbjct: 178 GVDKLKPEFVTITDSTGYVLTDFTDEAANLKLKVAQEELKIVDRERKKIENKIRQTLGRI 237

Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDP-----------------DSKVERSIRLSKDAQ 295
              +   + +  EL  D   I   +  P                  +KV+ S R   +  
Sbjct: 238 Y-TNRVETTIALELIWDDVSITNNLVLPIILKEDDPATPYDDSQFTNKVQVSTRTVTEDW 296

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
           + +   P+ A   E+N+P     K    ++   TD ++   NYE++ +  A    +Y++ 
Sbjct: 297 KGQQFIPQGAAGAEENVPPGYKDKSDRWQTYTKTDSQD---NYELSKRYEAIKKGSYQIG 353

Query: 356 RLSIAVVVNKGRLTEVLGRSADQ-------------GKIDSYLAEINKIVSAATGINSRR 402
           ++S AV ++ GR T+   ++ D                    +  +  +V AA G + +R
Sbjct: 354 KISAAVALD-GRWTKSYDQNGDPIITNGTSYVREYHPVTAEEIRNVTSLVQAAIGYDLKR 412

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           GD +++T + F     FN+   ++   D   R        L+  + +LL+ F+   A+R 
Sbjct: 413 GDQVSVTHIQFDHWDRFNAEDAKL-MRDRFIR------KTLIITMISLLILFVLALAIRA 465

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
           +             +           +    M     A+ ++N++  S        +   
Sbjct: 466 IQK-----------ELARRRRLREEELERKQMEMRRQAMMNANEEPISEMS-----LEDA 509

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             K+    ++ +     +  A++LR W   +
Sbjct: 510 ARKKLMDEVIRVSHERPDDVAQLLRTWMADD 540


>gi|229166587|ref|ZP_04294339.1| Flagellar M-ring protein fliF [Bacillus cereus AH621]
 gi|228616841|gb|EEK73914.1| Flagellar M-ring protein fliF [Bacillus cereus AH621]
          Length = 524

 Score =  234 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 96/568 (16%), Positives = 221/568 (38%), Gaps = 68/568 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++++   F+   SL     L++ + +L   +   A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKIKNVFQ---SLKTWHKLVIGAALLA--IATGALLYFTLPDKYVVVYQNLNDTDKQEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  LS+  +D++++ +G SI V  +     R  +   GLP +S +    L +  +S G +
Sbjct: 56  TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112

Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178
              +++ +     + LE +I R   +   +  A V I +P+    F +  A+ TA++ + 
Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169

Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-----RNILGKSL 231
                         I+ +++AAVP +   +V+V+DS   +++    E      +   K +
Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGIISKGTDEAHSNSSSSYEKEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            +   I+ +++ +I+  L      + ++      +N D    +   Y  D  V RS +  
Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKSNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288

Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           +++  ++        + +T    +P+         + + +     +  NYEI+     T 
Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTV-ETI 347

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402
             + +L + ++ V V+   L           K    +    + +  A G+ +        
Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRKIDMTTFKEAIGTAAGLQADPNGNFTN 397

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           G  + + ++ F + ++      + S M+     F  +   L+ L+G  LV F        
Sbjct: 398 G-QVNVVTVQFDQPKVEKEKEPEKSGMN--WWLFGGITAGLLALIG--LVWFF------- 445

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
           L      ++ E   + +      +S+ +   +P + I  +   + +      L  ++   
Sbjct: 446 LARRKKKREEEEYEEYLAEEEVAASSESIFEIPEEKIVPEPKPEPVEPSEPTLDDQVQ-- 503

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550
                        + + E  AK+++KW 
Sbjct: 504 ----------EATKEHVEGTAKVIKKWL 521


>gi|324325764|gb|ADY21024.1| flagellar MS-ring protein [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 524

 Score =  234 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 96/568 (16%), Positives = 217/568 (38%), Gaps = 68/568 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +++L   F+   SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKLKNVFQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  LS+  +D++++ +G SI V  +     R  +   GLP +S +    L +  +S G +
Sbjct: 56  TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112

Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178
              +++ +     + LE +I R   +   +  A V I +P+    F +  A+ TA++ + 
Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169

Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-----RNILGKSL 231
                         I+ +++AAVP +   +V+V+DS   +++    E      +   K +
Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHATSSSSYEKEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            +   I+ +++ +I+  L      + ++      +N D    +   Y  D  V RS +  
Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288

Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           +++  ++        + +T    +P+         + + +     +  NYEI+     T 
Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTV-ETI 347

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402
             + +L + ++ V V+   L           K    +    + +  A G+ +        
Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRRIDMTTFKEAIGTAAGLQADPNGNFTN 397

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           G  + + ++ F + +       + S ++     F  +   L+ L G  L+ F        
Sbjct: 398 G-QVNVVTVQFDQPKEEKKKEPEESGIN--WWLFGGITGGLLVLFG--LIWFF------- 445

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
           L      K+ E   + +      +S+ +   +P + I  +   +        L  ++   
Sbjct: 446 LARRKRKKEEEEYEEYLAEEEVAASSESIMEIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 505

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550
                          + E  AK+++KW 
Sbjct: 506 TK------------EHVEGTAKVIKKWL 521


>gi|222095370|ref|YP_002529430.1| flagellar ms-ring protein [Bacillus cereus Q1]
 gi|221239428|gb|ACM12138.1| flagellar M-ring protein [Bacillus cereus Q1]
          Length = 524

 Score =  234 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 96/568 (16%), Positives = 216/568 (38%), Gaps = 68/568 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +++L   F+   SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKLKNVFQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  LS+  +D++++ +G SI V  +     R  +   GLP +S +    L +  +S G +
Sbjct: 56  TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112

Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178
              +++ +     + LE +I R   +   +  A V I +P+    F +  A+ TA++ + 
Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169

Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-----RNILGKSL 231
                         I+ +++AAVP +   +V+V+DS   +++    E      +   K +
Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHATSSSSYEKEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            +   I+ +++ +I+  L      + ++      +N D    +   Y  D  V RS +  
Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288

Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           ++   ++        + +T    +P+         + + +     +  NYEI+     T 
Sbjct: 289 EETSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTV-ETI 347

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402
             + +L + ++ V V+   L           K    +    + +  A G+ +        
Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRRIDMTTFKEAIGTAAGLQADPNGNFTN 397

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           G  + + ++ F + +       + S ++     F  +   L+ L G  L+ F        
Sbjct: 398 G-QVNVVTVQFDQPKEEKKKEPEESGIN--WWLFGGITGGLLALFG--LIWFF------- 445

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
           L      K+ E   + +      +S+ +   +P + I  +   +        L  ++   
Sbjct: 446 LARRKRKKEEEEYEEYLAEEEVAASSESIMEIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 505

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550
                          + E  AK+++KW 
Sbjct: 506 TK------------EHVEGTAKVIKKWL 521


>gi|163939552|ref|YP_001644436.1| flagellar MS-ring protein [Bacillus weihenstephanensis KBAB4]
 gi|163861749|gb|ABY42808.1| flagellar M-ring protein FliF [Bacillus weihenstephanensis KBAB4]
          Length = 524

 Score =  234 bits (597), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 97/568 (17%), Positives = 221/568 (38%), Gaps = 68/568 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++++   F+   SL     L++ + +L   +   A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKIKNVFQ---SLKTWHKLVIGAALLA--IATGALLYFTLPDKYVVVYQNLNDTDKQEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  LS+  +D++++ +G SI V  +     R  +   GLP +S +    L +  +S G +
Sbjct: 56  TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112

Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178
              +++ +     + LE +I R   +I     A V I +P+    F +  A+ TA++ + 
Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFATI---ETANVQITLPEKETIFDEEKAKGTAAITVG 169

Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-----RNILGKSL 231
                         I+ +++AAVP +   +V+V+DS   +++    E      +   K +
Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGIISKGADEAHSNSSSSYEKEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            +   I+ +++ +I+  L      + ++      +N D    +   Y  D  V RS +  
Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKSNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288

Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           +++  ++        + +T    +P+         + + +     +  NYEI+     T 
Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTV-ETI 347

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402
             + +L + ++ V V+   L           K    +    + +  A G+ +        
Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRKIDMTTFKEAIGTAAGLQADPNGNFTN 397

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           G  + + ++ F + ++      + S M+     F  +   L+ L+G  LV F        
Sbjct: 398 G-QVNVVTVQFDQPKVEKEKEPEKSGMN--WWLFGGITAGLLALIG--LVWFF------- 445

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
           L      ++ E   + +      +S+ +   +P + I  +   + +      L  ++   
Sbjct: 446 LARRKKKREEEEYEEYLAEEEVAASSESIFEIPEEKIVPEPKPEPVEPSEPTLDDQVQ-- 503

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550
                        + + E  AK+++KW 
Sbjct: 504 ----------EATKEHVEGTAKVIKKWL 521


>gi|183220151|ref|YP_001838147.1| flagellar MS-ring protein [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189910271|ref|YP_001961826.1| flagellar MS-ring protein [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167774947|gb|ABZ93248.1| Endoflagellar biosynthesis/type III secretory pathway protein
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167778573|gb|ABZ96871.1| Flagellar M-ring FliF protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 566

 Score =  234 bits (596), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 123/591 (20%), Positives = 230/591 (38%), Gaps = 67/591 (11%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            I+D L + F     L +T+ +ILA V+ V ++  +      +  +   L+  L+  D +
Sbjct: 7   KIIDNLKELF---NKLDKTKKMILAGVLAVVVVAVIILSNVSSQRNRVVLFKDLDSKDFS 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            ++  L      +  S   S I+V      +    LA + L  +   +G+ELFD +  F 
Sbjct: 64  EVTKKLDALGYSYG-SSETSLITVDPEQRQEIVTKLAQENLIPAGV-TGWELFD-IEKFT 120

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--- 178
            T F ++I + RAL+G I +++ ++  I  A V+I +P+   F        ASV++    
Sbjct: 121 ETQFDKDIKKYRALKGAIEKSLNTLRPIEKADVNIAIPEGDLFESNSYPVKASVILHFRP 180

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI- 237
            +     K  + I +LVA AVP L   +V+V D  GK+++  E +       L IVQ   
Sbjct: 181 GVEGISKKEIKGIVNLVARAVPKLKPENVSVADPDGKIISDFEEDLEKERLELRIVQEKL 240

Query: 238 ----QHEIEM--NINKALAAFLGVDNFRSAVVAE--LNMDTQQIRE--------IVYDPD 281
               +  ++   +I   L  +LG ++       E   N D + + E           +PD
Sbjct: 241 RIEEEERVKRLIDIRNTLRWYLGGEDRVDITRFEYSFNWDQESLTENEVLPVVAEEDNPD 300

Query: 282 SK-----------VERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD 330
           +            ++ S + +K++ +     P+     E N+P                 
Sbjct: 301 TPYNERKLVDGYSLKVSSKETKESFKGRGFTPDGPAGTEPNLPPGYKDTD---YQKAEYS 357

Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG--RLTEVLGRSADQ---GKIDSYL 385
           K E  +NYE N +        +K+E++ ++VVV+    R     G   D+      +  L
Sbjct: 358 KDENINNYEFNKRVKDIKRQPWKIEKIGLSVVVDGVWERKEREDGLGYDRKYIPVAEPDL 417

Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445
             I K + AA G    RGD I++ ++     + F +   +        R    ++ A + 
Sbjct: 418 KLIRKNLEAAIGYTRSRGDQISVITIPKDRTEQFRAEDEEF----QRQRAIRNMVIASLV 473

Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505
           ++  L++  L   A+++        + E            +  V         ++LD   
Sbjct: 474 ILILLILAILVYRAIKKEIARRRRLREEELAAQQQMMREAALRVMDEGGAEVELSLDEK- 532

Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIED 556
                    L++ IN             + +   E  A++LR W   E + 
Sbjct: 533 ----LRRELLENAIN-------------LAKEKPEDVAQLLRTWLAEEEQT 566


>gi|42780839|ref|NP_978086.1| flagellar MS-ring protein [Bacillus cereus ATCC 10987]
 gi|42736759|gb|AAS40694.1| flagellar M-ring protein [Bacillus cereus ATCC 10987]
          Length = 524

 Score =  232 bits (593), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 96/568 (16%), Positives = 215/568 (37%), Gaps = 68/568 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +++L   F+   SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKLKNVFQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  LS+  +D++++ +G SI V  +     R  +   GLP +S +    L +  +S G +
Sbjct: 56  TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112

Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178
              +++ +     + LE +I R   +   +  A V I +P+    F +  A+ TA++ + 
Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169

Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-----RNILGKSL 231
                         I+ +++AAVP +   +V+V+DS   +++    E      +   K +
Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHATSSSSYEKEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            +   I+ +++ +I+  L      + ++      +N D    +   Y  D  V RS +  
Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288

Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           +++  ++        + +T    +P+         + + +     +  NYEI+       
Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIK 348

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402
               +L + ++ V V+   L           K    +    + +  A G+ +        
Sbjct: 349 KHP-ELTKTNVVVWVDNDTLV----------KRRIDMTTFKEAIGTAAGLQADPNGNFTN 397

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           G  + + ++ F + +       + S ++         I A +  +G  LV FL       
Sbjct: 398 G-QVNVVTVQFDQPKEEKKKEPEESGINW---WLFGGIPAGLLAIGG-LVWFL------- 445

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
           L      K+ E   + +      +S+ +   +P + I  +   +        L  ++   
Sbjct: 446 LARRKRKKEEEEYEEYLAEDEVAASSESIMEIPEEKIVPEPKPEPEQPKEPTLDEQVQDA 505

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550
                          + E  AK+++KW 
Sbjct: 506 TK------------EHVEGTAKVIKKWL 521


>gi|229160710|ref|ZP_04288702.1| Flagellar M-ring protein fliF [Bacillus cereus R309803]
 gi|228622725|gb|EEK79559.1| Flagellar M-ring protein fliF [Bacillus cereus R309803]
          Length = 524

 Score =  232 bits (593), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 93/568 (16%), Positives = 210/568 (36%), Gaps = 68/568 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++++   F+   SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKIRNVFQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  LS+  +D++++ +G SI V  +     R  +   GLP +S +    L +  +S G +
Sbjct: 56  TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112

Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178
              +++ +     + LE +I R   +   +  A V I +P+    F +  A+ TA++ + 
Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169

Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSL 231
                         I+ +++AAVP +   +V+V+DS   L++     AN    +   K +
Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKPEEVSVIDSKKGLISKGADAANTNSSSSYEKEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            +   I+ +++ +I+  L      + ++      +N D    +   Y  D  V RS +  
Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVTVNYDEVTRQSEKYG-DKGVLRSKQEQ 288

Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           +++  ++        + +T    +P+         + + +     +  NYEI+       
Sbjct: 289 EESSTAQEGADAKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIK 348

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402
               +L + ++ V V+   L           K    +    + +  A G+ +        
Sbjct: 349 KHP-ELTKTNVVVWVDNDTLV----------KRRIDMTTFKEAIGTAAGLQADPNGNFTN 397

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           G  + + ++ F + +       + S    L+      I   +  +  L+  FL     ++
Sbjct: 398 G-QVNVVTVQFDQPKAEGPKKQEES---GLNWWLIGGITGGLLALVGLVWFFLARRKKKK 453

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
                +    E   +   S   I       + P     L+   +                
Sbjct: 454 EEEEYEEYLVE--DEVAASSESIMEIPEEKIEPEPKPELEKPKEPTLDE----------- 500

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550
                  ++    + + E  AK+++KW 
Sbjct: 501 -------QVQDATKEHVEGTAKVIKKWL 521


>gi|217959230|ref|YP_002337778.1| flagellar MS-ring protein [Bacillus cereus AH187]
 gi|229138446|ref|ZP_04267035.1| Flagellar M-ring protein fliF [Bacillus cereus BDRD-ST26]
 gi|217064704|gb|ACJ78954.1| putative flagellar M-ring protein FliF [Bacillus cereus AH187]
 gi|228644983|gb|EEL01226.1| Flagellar M-ring protein fliF [Bacillus cereus BDRD-ST26]
          Length = 524

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 95/568 (16%), Positives = 217/568 (38%), Gaps = 68/568 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +++L   F+   SL     L++++ +L  +    A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKLKNVFQ---SLKTWHKLVISAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  LS+  +D++++ +G SI V  +     R  +   GLP +S +    L +  +S G +
Sbjct: 56  TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112

Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178
              +++ +     + LE +I R   +   +  A V I +P+    F +  A+ TA++ + 
Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169

Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSL 231
                         I+ +++AAVP +   +V+V+DS   +++    E      +   K +
Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            +   I+ +++ +I+  L      + ++      +N D    +   Y  D  V RS +  
Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288

Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           +++  ++        + +T    +P+         + + +     +  NYEI+     T 
Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTV-ETI 347

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402
             + +L + ++ V V+   L           K    +    + +  A G+ +        
Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRRIDMTTFKEAIGTAAGLQADPNGNFTN 397

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           G  + + ++ F + +       + S ++         I A +  +G L+  FL       
Sbjct: 398 G-QVNVVTVQFDQPKEEKPKEPEESGINW---WLFGGIPAGLLAIGGLVWFFL------- 446

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
                  K+ E   + +      +S+ +   +P + I  +   +        L  ++   
Sbjct: 447 -ARRKRKKEEEEYEEYLAEDEVAASSESIMEIPEEKIVPEPKPEPEQPKEPTLDEQVQDA 505

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550
                          + E  AK+++KW 
Sbjct: 506 TK------------EHVEGTAKVIKKWL 521


>gi|289433991|ref|YP_003463863.1| flagellar M-ring protein [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170235|emb|CBH26775.1| flagellar M-ring protein [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 547

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 104/574 (18%), Positives = 223/574 (38%), Gaps = 68/574 (11%)

Query: 15  TSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-NLYVKLEVSDVNRISVALSEANID 73
           + L       +   + V + +F+    ++N+P  +  LY  L  +   +++  L++  +D
Sbjct: 9   SKLKNWHKGAIFVGLFVVVTVFL---LYLNTPKTEITLYKNLSETSQQQVTDQLAKMGVD 65

Query: 74  FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
           + +  +G+ I V   +    R   A  G+P +  +    L    +S G +   +++    
Sbjct: 66  YTVDKSGN-ILVDEKVETLVRDKFADLGIPYTGQDGNDILL--NSSLGASEEDKKMQEKV 122

Query: 134 A----LEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVY--K 186
                LE EI ++  +   + +A V + +P+  S F +   + +A+V ++  N      +
Sbjct: 123 GTKVNLEKEIVQSYGT--TVDSASVQLTLPESSSIFEEASQKGSAAVTLKTKNNQTLTSE 180

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM----ERNILGKSLSIVQAIQHEIE 242
               I+  V+AAVPN+   DV ++D+   +++  +       +     + I  AI   ++
Sbjct: 181 QVLGIQRTVSAAVPNVASEDVAIIDTKNGVISEADTTKEEGSSAYKNEVDIQNAIGKNVK 240

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSKDAQRSETSQ 301
            +I   L++   +DNFR      +N D  +     Y  D KV  + +  S D  +  T+ 
Sbjct: 241 TDIEGTLSSIFALDNFRVNTSVTVNFDEIKQNTERYPNDGKVRSNQKDTSTDTSKGSTNT 300

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
            ES      ++P+ ++       +   ++K  E +NYE+++           L + ++ V
Sbjct: 301 TESGTAANADVPNYTEENGGDTNTY-TSEKSSETTNYELDSTIQEIKKHP-ALAKTNVVV 358

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS--------------------R 401
            V++  L                +AE  K V  + G+                      +
Sbjct: 359 WVDQQALNNNGV----------DMAEFTKAVGVSAGLTPNMATPEGAEEGATPTFEGTFQ 408

Query: 402 RGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461
            GD +TI  + FL+NQ         +           +   L+F +    +    +  L+
Sbjct: 409 NGD-VTIMPIQFLDNQAPVEKDTGKTPEPASKAWIWWLAGGLLFAIIAAGIIGYIIF-LK 466

Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521
           R   +++A + E      +   P   A+   ++P D+   +            L++R   
Sbjct: 467 RKEQLEEALEPEE-----VDYIPAEEAI---VVPEDHPDFNFQTDAFHLSEPELKAR--- 515

Query: 522 YVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
              +    +L  M + +  R A +++KW     E
Sbjct: 516 --KESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 547


>gi|256112170|ref|ZP_05453091.1| flagellar MS-ring protein [Brucella melitensis bv. 3 str. Ether]
 gi|256261971|ref|ZP_05464503.1| flagellar M-ring protein FliF [Brucella melitensis bv. 2 str. 63/9]
 gi|265993596|ref|ZP_06106153.1| flagellar M-ring protein FliF [Brucella melitensis bv. 3 str.
           Ether]
 gi|262764466|gb|EEZ10498.1| flagellar M-ring protein FliF [Brucella melitensis bv. 3 str.
           Ether]
 gi|263091455|gb|EEZ15991.1| flagellar M-ring protein FliF [Brucella melitensis bv. 2 str. 63/9]
 gi|326411310|gb|ADZ68374.1| flagellar MS-ring protein [Brucella melitensis M28]
 gi|326554599|gb|ADZ89238.1| flagellar MS-ring protein [Brucella melitensis M5-90]
          Length = 333

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 102/324 (31%), Positives = 174/324 (53%), Gaps = 6/324 (1%)

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           ++ +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  +
Sbjct: 1   MDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 60

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           + ++A  VEQN+P    +      S E TD++EE +NYE+N+ +++T  D Y ++RLSIA
Sbjct: 61  RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSMTVSTVSDGYSIKRLSIA 120

Query: 361 VVVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           VV+++ RL +  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL+    
Sbjct: 121 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGA 180

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA--KKGEVGGK 477
           +   V   + D L R   +  NAL  L    L+ + GL  L R  N+  A  +       
Sbjct: 181 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 240

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
            + +P  I  A + G      I   ++  D    S    S +   +   + LRL  MIE+
Sbjct: 241 EVATPNFIGGAESVGEGVQAVIGGPAAYADQMKTS---LSDLRQRMRMPAKLRLEQMIEM 297

Query: 538 NEERFAKILRKWARSEIEDRYTQH 561
           +EER A +L++W       R    
Sbjct: 298 DEERVAAVLKQWIHETASGREADP 321


>gi|206974945|ref|ZP_03235860.1| putative flagellar M-ring protein FliF [Bacillus cereus H3081.97]
 gi|206746964|gb|EDZ58356.1| putative flagellar M-ring protein FliF [Bacillus cereus H3081.97]
          Length = 524

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 95/568 (16%), Positives = 215/568 (37%), Gaps = 68/568 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +++L   F+   SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKLKNVFQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  LS+  +D++++ +G SI V  +     R  +   GLP +S +    L +  +S G +
Sbjct: 56  TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112

Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178
              +++ +     + LE +I R   +   +  A V I +P+    F +  A+ TA++ + 
Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169

Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSL 231
                         I+ +++AAVP +   +V+V+DS   +++    E      +   K +
Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            +   I+ +++ +I+  L      + ++      +N D    +   Y  D  V RS +  
Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288

Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           ++   ++        + +T    +P+         + + +     +  NYEI+     T 
Sbjct: 289 EETSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTV-ETI 347

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402
             + +L + ++ V V+   L           K    +    + +  A G+ +        
Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRRIDMTTFKEAIGTAAGLQADPNGNFTN 397

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           G  + + ++ F + +       + S ++        +   L+ L G  L+ F        
Sbjct: 398 G-QVNVVTVQFDQPKEEKKKEPEESGIN--WWLIGGITGGLLALFG--LIWFF------- 445

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
           L      K+ E   + +      +S+ +   +P + I  +   +        L  ++   
Sbjct: 446 LARRKRKKEEEEYEEYLAEEEVAASSESIMEIPEEKIVPEPKPEPEQPKEPTLDEQVQDA 505

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550
                          + E  AK+++KW 
Sbjct: 506 TK------------EHVEGTAKVIKKWL 521


>gi|17988496|ref|NP_541129.1| flagellar M-ring protein FLIF [Brucella melitensis bv. 1 str. 16M]
 gi|256042873|ref|ZP_05445819.1| flagellar MS-ring protein [Brucella melitensis bv. 1 str. Rev.1]
 gi|260564110|ref|ZP_05834595.1| flagellar M-ring protein [Brucella melitensis bv. 1 str. 16M]
 gi|265989308|ref|ZP_06101865.1| flagellar M-ring protein [Brucella melitensis bv. 1 str. Rev.1]
 gi|17984287|gb|AAL53393.1| flagellar m-ring protein flif [Brucella melitensis bv. 1 str. 16M]
 gi|260151753|gb|EEW86846.1| flagellar M-ring protein [Brucella melitensis bv. 1 str. 16M]
 gi|262999977|gb|EEZ12667.1| flagellar M-ring protein [Brucella melitensis bv. 1 str. Rev.1]
          Length = 333

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 102/324 (31%), Positives = 175/324 (54%), Gaps = 6/324 (1%)

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           ++ +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  +
Sbjct: 1   MDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 60

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           + ++A  VEQN+P    +      S E TD++EE +NYE+N+ +++T  D Y ++RLSIA
Sbjct: 61  RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSMTVSTVSDGYSIKRLSIA 120

Query: 361 VVVNKGRLTEVLGRSADQGK-IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           VV+++ RL +  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL++   
Sbjct: 121 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDSAGA 180

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA--KKGEVGGK 477
           +   V   + D L R   +  NAL  L    L+ + GL  L R  N+  A  +       
Sbjct: 181 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 240

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
            + +P  I  A + G      I   ++  D    S    S +   +   + LRL  MIE+
Sbjct: 241 EVATPNFIGGAESVGEGVQAVIGGPAAYADQMKTS---LSDLRQRMRMPAKLRLEQMIEM 297

Query: 538 NEERFAKILRKWARSEIEDRYTQH 561
           +EER A +L++W       R    
Sbjct: 298 DEERVAAVLKQWIHETASGREADP 321


>gi|229096232|ref|ZP_04227205.1| Flagellar M-ring protein fliF [Bacillus cereus Rock3-29]
 gi|229115187|ref|ZP_04244597.1| Flagellar M-ring protein fliF [Bacillus cereus Rock1-3]
 gi|228668327|gb|EEL23759.1| Flagellar M-ring protein fliF [Bacillus cereus Rock1-3]
 gi|228687192|gb|EEL41097.1| Flagellar M-ring protein fliF [Bacillus cereus Rock3-29]
          Length = 524

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 96/568 (16%), Positives = 220/568 (38%), Gaps = 68/568 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++++    +   SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKIKNVIQ---SLKTWHKLVIGAALLAVVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  LS+  +D++++ +G SI V  +     R  +   GLP +S +    L +  +S G +
Sbjct: 56  TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112

Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178
              +++ +     + LE +I R   +   +  A V I +P+    F +  A+ TA++ + 
Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169

Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-----RNILGKSL 231
                         I+ +++AAVP +   +V+V+DS   +++    E      +   K +
Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGIISKGADEAHSNSSSSYEKEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            +   I+ +++ +I+  L      + ++      +N D    +   Y  D  V RS +  
Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKSNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288

Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           +++  ++        + +T   ++P+         + + +     +  NYEI+     T 
Sbjct: 289 EESSTAQEGADTKQGAGITANGDVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTV-ETI 347

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI------NSRR 402
             + +L + ++ V V+   L           K    +    + +  A G+      N   
Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRKIDMTTFKEAIGTAAGLQVDPNGNFTN 397

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           G  + + ++ F + ++      + S M+     F  +   L+ L+G  LV F        
Sbjct: 398 G-QVNVVTVQFDQPKVEKEKEPEKSGMN--WWLFGGITAGLLALIG--LVWFF------- 445

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
           L      ++ E   + +      +S  +   +P + I  + + +        L  ++   
Sbjct: 446 LARRKKKREEEEYEEYLAEEEIAASNESILEIPEEKIVPEPTPEPEGPKEPTLDDQVQ-- 503

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550
                        + + E  AK+++KW 
Sbjct: 504 ----------EATKEHVEGTAKVIKKWL 521


>gi|229195959|ref|ZP_04322712.1| Flagellar M-ring protein fliF [Bacillus cereus m1293]
 gi|228587518|gb|EEK45583.1| Flagellar M-ring protein fliF [Bacillus cereus m1293]
          Length = 524

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 94/568 (16%), Positives = 216/568 (38%), Gaps = 68/568 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +++L   F+   SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKLKNVFQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  LS+  +D++++ +G SI V  +     R  +   GLP +S +    L +  +S G +
Sbjct: 56  TAELSKLGVDYQLATDG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112

Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178
              + + +     + LE +I R   +   +  A V I +P+    F +  A+ TA++ + 
Sbjct: 113 EQDKRMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169

Query: 179 AINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-----RNILGKSL 231
                +        ++ +++AAVP +   +V+V+DS   +++    E      +   K +
Sbjct: 170 VKRGQLLMADQVAGVQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            +   I+ +++ +I+  L      + ++      +N D    +   Y  D  V RS +  
Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288

Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           +++  ++        + +T    +P+         + + +     +  NYEI+     T 
Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTV-ETI 347

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402
             + +L + ++ V V+   L           K    +    + +  A G+ +        
Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRRIDMTTFKEAIGTAAGLQADPNGNFTN 397

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           G  + + ++ F + +       + S ++        +   L+ L G  L+ F        
Sbjct: 398 G-QVNVVTVQFDQPKEEKKKEPEESGIN--WWLIGGITGGLLALFG--LIWFF------- 445

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
           L      K+ E   + +      +S+ +   +P + I  +   +        L  ++   
Sbjct: 446 LARRKRKKEEEEYEEYLAEEEVAASSESIMEIPEEKIVPEPKPEPEQPKEPTLDEQVQDA 505

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550
                          + E  AK+++KW 
Sbjct: 506 TK------------EHVEGTAKVIKKWL 521


>gi|218460680|ref|ZP_03500771.1| flagellar MS-ring protein [Rhizobium etli Kim 5]
          Length = 310

 Score =  231 bits (588), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 136/310 (43%), Positives = 196/310 (63%), Gaps = 8/310 (2%)

Query: 254 GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP 313
           G+DNFRS+V A+LN D QQI+E  YDP+SKVERS+R +K+AQ+S+  Q ++A TVEQN+P
Sbjct: 1   GMDNFRSSVTADLNTDAQQIQETTYDPESKVERSVRSTKEAQQSQQKQSDNATTVEQNIP 60

Query: 314 HVSDRKVPLP--RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV 371
             +          S + +DK+EEQ+NYEIN+K+ ATT ++Y++E+LSIAVVVNKGR+ ++
Sbjct: 61  QAAPDAGGAGGPESQDKSDKREEQTNYEINSKTTATTRNSYQVEKLSIAVVVNKGRIAKM 120

Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDI 431
           +G  ADQ K+D+Y+AE+ KIV++A GI+++RGD +T+T+MDFLENQL    T  V  MD+
Sbjct: 121 VGEPADQAKVDAYIAEMQKIVASAAGIDAKRGDVVTVTAMDFLENQLLEDATGGVRVMDM 180

Query: 432 LSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG------EVGGKSILSPPPI 485
           LSR+ A +IN+L F+    +V ++GL  L R  + + A         E  G  +    P 
Sbjct: 181 LSRNLAGIINSLAFVAVAFVVVWMGLRPLVRSVSGNGAGAALGDSSPESAGLELPDFAPA 240

Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545
           + A    LM          + +      +     N  V +  + +L  M+EINEER AKI
Sbjct: 241 AGASGGALMDGFGSDFGFDSTEDLLSLGDDDGNFNRRVKEGPERKLARMVEINEERAAKI 300

Query: 546 LRKWARSEIE 555
           LRKWA  E  
Sbjct: 301 LRKWAIDEAA 310


>gi|323174683|gb|EFZ60303.1| flagellar M-ring protein FliF [Escherichia coli LT-68]
          Length = 380

 Score =  231 bits (588), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 81/402 (20%), Positives = 162/402 (40%), Gaps = 43/402 (10%)

Query: 174 SVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLS 232
           +V +            AI HLV++AV  L  G+VT++D  G LLT  N   R++    L 
Sbjct: 2   TVNLLPGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQFNTSGRDLNDAQLK 61

Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292
               ++  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+    ++   S+
Sbjct: 62  YASDVEGRIQRRIEAILSPIVGKGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSR 121

Query: 293 ---DAQRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKE 333
              ++++S +  P        N P  ++                       S   + ++ 
Sbjct: 122 QLNESEQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRN 181

Query: 334 EQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVS 393
           E SNYE++     T  +   ++RLS+AVVVN   L +           +  + +I  +  
Sbjct: 182 ETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTR 237

Query: 394 AATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVT 453
            A G + +RGD++ + +  F  +   +    ++ F    +     ++ A  +L+  L+  
Sbjct: 238 EAMGFSEKRGDSLNVVNSPFNSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAW 293

Query: 454 FLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR 513
            L   A+R       A+  +   +   +   +  AV   L  ++ +    +NQ       
Sbjct: 294 LLWRKAVRPQLTRR-AEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQ------- 345

Query: 514 NLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
               R+ + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 346 ----RLGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 380


>gi|229058380|ref|ZP_04196764.1| Flagellar M-ring protein fliF [Bacillus cereus AH603]
 gi|229132559|ref|ZP_04261408.1| Flagellar M-ring protein fliF [Bacillus cereus BDRD-ST196]
 gi|228650905|gb|EEL06891.1| Flagellar M-ring protein fliF [Bacillus cereus BDRD-ST196]
 gi|228719889|gb|EEL71479.1| Flagellar M-ring protein fliF [Bacillus cereus AH603]
          Length = 526

 Score =  231 bits (588), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 97/568 (17%), Positives = 220/568 (38%), Gaps = 66/568 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++++   F+   SL     L++ + +L   +   A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKIKNVFQ---SLKTWHKLVIGAALLA--IATGALLYFTLPDKYVVVYQNLNDTDKQEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  LS+  +D++++ +G SI V  +     R  +   GLP +S +    L +  +S G +
Sbjct: 56  TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112

Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178
              +++ +     + LE +I R   +I     A V I +P+    F +  A+ TA++ + 
Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFATI---ETANVQITLPEKETIFDEEKAKGTAAITVG 169

Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-----RNILGKSL 231
                         I+ +++AAVP +   +V+V+DS   +++    E      +   K +
Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGIISKGADEAHSNSSSSYEKEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            +   I+ +++ +I+  L      + ++      +N D    +   Y  D  V RS +  
Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKSNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288

Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           +++  ++        + +T    +P+         + + +     +  NYEI+     T 
Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTV-ETI 347

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402
             + +L + ++ V V+   L           K    +    + +  A G+ +        
Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRKIDMTTFKEAIGTAAGLQADPNGNFTN 397

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           G  + + ++ F + ++      + S M+     F  +   L+ L+G  LV F        
Sbjct: 398 G-QVNVVTVQFDQPKVEKEKEPEKSGMN--WWLFGGITAGLLALIG--LVWFF------- 445

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
           L      ++ E   + +      +S+ +   +P + I      +         +  ++  
Sbjct: 446 LARRKKKREEEEYEEYLAEEEVAASSESIFEIPEEKIV--PEPKPEPEPVEPSEPTLDDQ 503

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550
           V            + + E  AK+++KW 
Sbjct: 504 VQ--------EATKEHVEGTAKVIKKWL 523


>gi|229102345|ref|ZP_04233053.1| Flagellar M-ring protein fliF [Bacillus cereus Rock3-28]
 gi|228680992|gb|EEL35161.1| Flagellar M-ring protein fliF [Bacillus cereus Rock3-28]
          Length = 524

 Score =  230 bits (587), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 95/568 (16%), Positives = 220/568 (38%), Gaps = 68/568 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++++    +   SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKIKNVIQ---SLKTWHKLVIGAALLAVVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  LS+  +D++++ +G SI V  +     R  +   GLP +S +    L +  +S G +
Sbjct: 56  TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112

Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178
              +++ +     + LE +I R   +   +  A V I +P+    F +  A+ TA++ + 
Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169

Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-----RNILGKSL 231
                         I+ +++AAVP +   +V+V+DS   +++    E      +   K +
Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGIISKGADEAHSNSSSSYEKEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            +   I+ +++ +I+  L      + ++      +N D    +   Y  D  V RS +  
Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKSNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288

Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           +++  ++        + +T   ++P+         + + +     +  NYEI+     T 
Sbjct: 289 EESSTAQEGADTKQGAGITANGDVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTV-ETI 347

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402
             + +L + ++ V V+   L           K    +    + +  A G+ +        
Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRRIDMTTFKEAIGTAAGLQADPNGNFTN 397

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           G  + + ++ F + ++      + S M+     F  +   L+ L+G  LV F        
Sbjct: 398 G-QVNVVTVQFDQPKVEKEKEPEKSGMN--WWLFGGITAGLLALIG--LVWFF------- 445

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
           L      ++ E   + +      +S  +   +P + I  + + +        L  ++   
Sbjct: 446 LARRKKKREEEEYEEYLAEEEIAASNESILEIPEEKIVPEPTPEPEGPKEPTLDDQVQ-- 503

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550
                        + + E  AK+++KW 
Sbjct: 504 ----------EATKEHVEGTAKVIKKWL 521


>gi|228933030|ref|ZP_04095893.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228826631|gb|EEM72402.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 524

 Score =  230 bits (586), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 94/568 (16%), Positives = 214/568 (37%), Gaps = 68/568 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++++    +   SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  LS+  +D++++ +GS I V  +     R  +   GLP +S +    L +  +S G +
Sbjct: 56  TAELSKLGVDYQLAADGS-IRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112

Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178
              +++ +     + LE +I R   +   +  A V I +P+    F +  A+ TA++ + 
Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169

Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-----RNILGKSL 231
                         I+ +++AAVP +   +V+V+DS   +++    E      +   K +
Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            + Q I+ +++ +I+  L      + ++      +N D    +   Y  D  V RS +  
Sbjct: 230 EMQQQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288

Query: 292 KDAQRSETSQ---PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           +++  ++        + +T    +P+         + + +     +  NYEI+       
Sbjct: 289 EESSTAQEGAEAKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIK 348

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402
               +L + ++ V V+   L           K    +    + +  A G+ +        
Sbjct: 349 KHP-ELTKTNVVVWVDNDTLV----------KRKIDMTTFKEAIGTAAGLQADPNGNFTN 397

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           G  + + ++ F + +       + S ++         I A +  +G L+  FL       
Sbjct: 398 G-QVNVVTVQFDQPKEEKKKEPEESGINW---WLFGGIPAGLLAIGGLVWFFL------- 446

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
                  K+ E   + +      +S  +   +P + I  +S  +        L  ++   
Sbjct: 447 -ARRKRKKEEEEYEEYLAEEEIAASNESIMEIPEEKIVPESKPEPEEPKEPTLDEQVQDA 505

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550
                          + E  AK+++KW 
Sbjct: 506 TK------------EHVEGTAKVIKKWL 521


>gi|228952126|ref|ZP_04114221.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228807658|gb|EEM54182.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 524

 Score =  230 bits (586), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 92/568 (16%), Positives = 213/568 (37%), Gaps = 68/568 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++++    +   SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  LS+  +D++++ +G SI V  +     R  +   GLP +S +    L +  +S G +
Sbjct: 56  TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112

Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178
              +++ +     + LE +I R   +   +  A V I +P+    F +  A+ TA++ + 
Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169

Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSL 231
                         I+ +++AAVP +   +V+V+DS   +++    E      +   K +
Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            +   ++ +++ +I+  L      + ++      +N D    +   Y  D  V RS +  
Sbjct: 230 EMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288

Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           +++  ++        + +T    +P+         + + +     +  NYEI+     T 
Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTV-ETI 347

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402
             + +L + ++ V V+   L           K    +    + +  A G+ +        
Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRKIDMTTFKEAIGTAAGLQADPNGNFIN 397

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           G  + + ++ F + +       + S M+         I A +  +G  LV FL     R+
Sbjct: 398 G-QVNVVTVQFDQPKAEKEKEPEKSGMNW---WLFGGITAGLLAIGG-LVWFLLARRKRK 452

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
               +  +       +  +   +        +P + I  +   +        L  ++   
Sbjct: 453 KEEEEYEEYLVEEEIAASNESIL-------EIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 505

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550
                          + E  AK+++KW 
Sbjct: 506 TK------------EHVEGTAKVIKKWL 521


>gi|228914325|ref|ZP_04077940.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228845319|gb|EEM90355.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 524

 Score =  229 bits (585), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 93/568 (16%), Positives = 214/568 (37%), Gaps = 68/568 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++++    +   SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  LS+  +D++++ +G SI V  +     R  +   GLP +S +    L +  +S G +
Sbjct: 56  TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112

Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178
              +++ +     + LE +I R   +   +  A V I +P+    F +  A+ TA++ + 
Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169

Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-----RNILGKSL 231
                         I+ +++AAVP +   +V+V+DS   +++    E      +   K +
Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            +   I+ +++ +I+  L      + ++      +N D    +   Y  D  V RS +  
Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288

Query: 292 KDAQRSETSQ---PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           +++  ++        + +T    +P+         + + +     +  NYEI+     T 
Sbjct: 289 EESSTAQEGAETKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTV-ETI 347

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402
             + +L + ++ V V+   L           K    +    + +  A G+ +        
Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRKIDMTTFKEAIGTAAGLQADPNGNFTN 397

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           G  + + ++ F + +       + S ++         I A +  +G L+  FL       
Sbjct: 398 G-QVNVVTVQFDQPKEEKKKEPEESGINW---WLFGGIPAGLLAIGGLVWFFL------- 446

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
                  K+ E   + +      +S  +   +P + I  +   +        L  ++   
Sbjct: 447 -ARRKRKKEEEEYEEYLAEEEIAASNESIMEIPEEKIVPEPKLEPEEPKEPTLDEQVQDA 505

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550
                          + E  AK+++KW 
Sbjct: 506 TK------------EHVEGTAKVIKKWL 521


>gi|49477313|ref|YP_035866.1| flagellar MS-ring protein [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|52143713|ref|YP_083117.1| flagellar MS-ring protein [Bacillus cereus E33L]
 gi|196038966|ref|ZP_03106273.1| putative flagellar M-ring protein FliF [Bacillus cereus NVH0597-99]
 gi|218902861|ref|YP_002450695.1| putative flagellar M-ring protein FliF [Bacillus cereus AH820]
 gi|225863605|ref|YP_002748983.1| putative flagellar M-ring protein FliF [Bacillus cereus 03BB102]
 gi|228926782|ref|ZP_04089850.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228945349|ref|ZP_04107704.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229183938|ref|ZP_04311154.1| Flagellar M-ring protein fliF [Bacillus cereus BGSC 6E1]
 gi|254723823|ref|ZP_05185609.1| flagellar MS-ring protein [Bacillus anthracis str. A1055]
 gi|301053283|ref|YP_003791494.1| flagellar M-ring protein [Bacillus anthracis CI]
 gi|49328869|gb|AAT59515.1| flagellar M-ring protein [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|51977182|gb|AAU18732.1| flagellar M-ring protein [Bacillus cereus E33L]
 gi|196030111|gb|EDX68711.1| putative flagellar M-ring protein FliF [Bacillus cereus NVH0597-99]
 gi|218537965|gb|ACK90363.1| putative flagellar M-ring protein FliF [Bacillus cereus AH820]
 gi|225787831|gb|ACO28048.1| putative flagellar M-ring protein FliF [Bacillus cereus 03BB102]
 gi|228599590|gb|EEK57194.1| Flagellar M-ring protein fliF [Bacillus cereus BGSC 6E1]
 gi|228814321|gb|EEM60587.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228832895|gb|EEM78464.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|300375452|gb|ADK04356.1| flagellar M-ring protein [Bacillus cereus biovar anthracis str. CI]
          Length = 524

 Score =  229 bits (585), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 93/568 (16%), Positives = 214/568 (37%), Gaps = 68/568 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++++    +   SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  LS+  +D++++ +G SI V  +     R  +   GLP +S +    L +  +S G +
Sbjct: 56  TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112

Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178
              +++ +     + LE +I R   +   +  A V I +P+    F +  A+ TA++ + 
Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169

Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-----RNILGKSL 231
                         I+ +++AAVP +   +V+V+DS   +++    E      +   K +
Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            +   I+ +++ +I+  L      + ++      +N D    +   Y  D  V RS +  
Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288

Query: 292 KDAQRSETSQ---PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           +++  ++        + +T    +P+         + + +     +  NYEI+     T 
Sbjct: 289 EESSTAQEGAETKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTV-ETI 347

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402
             + +L + ++ V V+   L           K    +    + +  A G+ +        
Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRKIDMTTFKEAIGTAAGLQADPNGNFTN 397

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           G  + + ++ F + +       + S ++         I A +  +G L+  FL       
Sbjct: 398 G-QVNVVTVQFDQPKEEKKKEPEESGINW---WLFGGIPAGLLAIGGLVWFFL------- 446

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
                  K+ E   + +      +S  +   +P + I  +   +        L  ++   
Sbjct: 447 -ARRKRKKEEEEYEEYLAEEEIAASNESIMEIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 505

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550
                          + E  AK+++KW 
Sbjct: 506 TK------------EHVEGTAKVIKKWL 521


>gi|196033494|ref|ZP_03100906.1| putative flagellar M-ring protein FliF [Bacillus cereus W]
 gi|195993928|gb|EDX57884.1| putative flagellar M-ring protein FliF [Bacillus cereus W]
          Length = 524

 Score =  229 bits (585), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 93/568 (16%), Positives = 214/568 (37%), Gaps = 68/568 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++++    +   SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  LS+  +D++++ +G SI V  +     R  +   GLP +S +    L +  +S G +
Sbjct: 56  TAELSKLGVDYQLATDG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112

Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178
              +++ +     + LE +I R   +   +  A V I +P+    F +  A+ TA++ + 
Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169

Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-----RNILGKSL 231
                         I+ +++AAVP +   +V+V+DS   +++    E      +   K +
Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            +   I+ +++ +I+  L      + ++      +N D    +   Y  D  V RS +  
Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288

Query: 292 KDAQRSETSQ---PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           +++  ++        + +T    +P+         + + +     +  NYEI+     T 
Sbjct: 289 EESSTAQEGAETKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTV-ETI 347

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402
             + +L + ++ V V+   L           K    +    + +  A G+ +        
Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRKIDMTTFKEAIGTAAGLQADPNGNFTN 397

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           G  + + ++ F + +       + S ++         I A +  +G L+  FL       
Sbjct: 398 G-QVNVVTVQFDQPKEEKKKEPEESGINW---WLFGGIPAGLLAIGGLVWFFL------- 446

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
                  K+ E   + +      +S  +   +P + I  +   +        L  ++   
Sbjct: 447 -ARRKRKKEEEEYEEYLAEEEIAASNESIMEIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 505

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550
                          + E  AK+++KW 
Sbjct: 506 TK------------EHVEGTAKVIKKWL 521


>gi|229029426|ref|ZP_04185509.1| Flagellar M-ring protein fliF [Bacillus cereus AH1271]
 gi|228731885|gb|EEL82784.1| Flagellar M-ring protein fliF [Bacillus cereus AH1271]
          Length = 524

 Score =  229 bits (585), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 97/568 (17%), Positives = 217/568 (38%), Gaps = 68/568 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +++L   F+   SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKLKNVFQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  LS+  +D++++ +G SI V  +     R  +   GLP +S +    L +  +S G +
Sbjct: 56  TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112

Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178
              +++ +     + LE +I R   +I     A V I +P+    F +  A+ TA++ + 
Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAAI---ETANVQITLPEKETIFDEEKAKGTAAITVG 169

Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSL 231
                         ++ +++AAVP +   +V+V+DS   +++    E      +   K +
Sbjct: 170 VKRGQLLTADQVAGVQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            +   I+ +++ +I+  L      + ++      +N D    +   Y  D  V RS +  
Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288

Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           +++  ++        + +T    +P+         + + +     +  NYEI+     T 
Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTV-ETI 347

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402
             + +L + ++ V V+   L           K    +    + +  A G+ +        
Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRRIDMTTFKEAIGTAAGLQADPNGNFTN 397

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           G  + + ++ F + +       + S M+        +   L+ LVG  L+ F        
Sbjct: 398 G-QVNVVTVQFDQPKEEKKKEPEASGMN--WWLIGGITGGLLALVG--LIWFF------- 445

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
           L      K+ E   + +      +S+ +   +P + I  +   +        L  ++   
Sbjct: 446 LARRKRKKEEEEYEEYLAEEEVAASSESIMEIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 505

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550
                          + E  AK+++KW 
Sbjct: 506 TK------------EHVEGTAKVIKKWL 521


>gi|229155317|ref|ZP_04283428.1| Flagellar M-ring protein fliF [Bacillus cereus ATCC 4342]
 gi|228628242|gb|EEK84958.1| Flagellar M-ring protein fliF [Bacillus cereus ATCC 4342]
          Length = 524

 Score =  229 bits (585), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 93/568 (16%), Positives = 214/568 (37%), Gaps = 68/568 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++++    +   SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  LS+  +D++++ +G SI V  +     R  +   GLP +S +    L +  +S G +
Sbjct: 56  TAELSKLGVDYQLATDG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112

Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178
              +++ +     + LE +I R   +   +  A V I +P+    F +  A+ TA++ + 
Sbjct: 113 EQDKKMKQIVGTRKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169

Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-----RNILGKSL 231
                         I+ +++AAVP +   +V+V+DS   +++    E      +   K +
Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            +   I+ +++ +I+  L      + ++      +N D    +   Y  D  V RS +  
Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288

Query: 292 KDAQRSETSQ---PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           +++  ++        + +T    +P+         + + +     +  NYEI+     T 
Sbjct: 289 EESSTAQEGAETKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTV-ETI 347

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402
             + +L + ++ V V+   L           K    +    + +  A G+ +        
Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRKIDMTTFKEAIGTAAGLQADPNGNFTN 397

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           G  + + ++ F + +       + S ++         I A +  +G L+  FL       
Sbjct: 398 G-QVNVVTVQFDQPKEEKKKEPEESGINW---WLFGGIPAGLLAIGGLVWFFL------- 446

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
                  K+ E   + +      +S  +   +P + I  +   +        L  ++   
Sbjct: 447 -ARRKRKKEEEEYEEYLAEEEIAASNESIMEIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 505

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550
                          + E  AK+++KW 
Sbjct: 506 TK------------EHVEGTAKVIKKWL 521


>gi|229090707|ref|ZP_04221940.1| Flagellar M-ring protein fliF [Bacillus cereus Rock3-42]
 gi|228692649|gb|EEL46375.1| Flagellar M-ring protein fliF [Bacillus cereus Rock3-42]
          Length = 524

 Score =  229 bits (585), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 93/568 (16%), Positives = 213/568 (37%), Gaps = 68/568 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++++    +   SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  LS+  +D++++ +G SI V  +     R  +   GLP +S +    L +  +S G +
Sbjct: 56  TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112

Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178
              +++ +     + LE +I R   +   +  A V I +P+    F +  A+ TA++ + 
Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169

Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-----RNILGKSL 231
                         I+ +++AAVP +   +V+V+DS   +++    E          K +
Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSTSYEKEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            +   I+ +++ +I+  L      + ++      +N D    +   Y  D  V RS +  
Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288

Query: 292 KDAQRSETSQ---PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           +++  ++        + +T    +P+         + + +     +  NYEI+     T 
Sbjct: 289 EESSTAQEGAETKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTV-ETI 347

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402
             + +L + ++ V V+   L           K    +    + +  A G+ +        
Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRKIDMTTFKEAIGTAAGLQADPNGNFTN 397

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           G  + + ++ F + +       + S ++         I A +  +G L+  FL       
Sbjct: 398 G-QVNVVTVQFDQPKEEKKKEPEESGINW---WLFGGIPAGLLAIGGLVWFFL------- 446

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
                  K+ E   + +      +S  +   +P + I  +   +        L  ++   
Sbjct: 447 -ARRKRKKEEEEYEEYLAEEEIAASNESIMEIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 505

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550
                          + E  AK+++KW 
Sbjct: 506 TK------------EHVEGTAKVIKKWL 521


>gi|228984830|ref|ZP_04145002.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228775028|gb|EEM23422.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 524

 Score =  229 bits (584), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 93/568 (16%), Positives = 213/568 (37%), Gaps = 68/568 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++++    +   SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  LS+  +D++++ +G SI V  +     R  +   GLP +S +    L +  +S G +
Sbjct: 56  TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112

Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178
              +++ +     + LE +I R   +   +  A V I +P+    F +  A+ TA++ + 
Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169

Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-----RNILGKSL 231
                         I+ +++AAVP +   +V+V+DS   +++    E      +   K +
Sbjct: 170 VKRGQLLTADQVTGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            +   I+ +++ +I+  L      + ++      +N D    +   Y  D  V RS +  
Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288

Query: 292 KDAQRSETSQ---PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           +++  ++        + +T    +P+         + + +     +  NYEI+     T 
Sbjct: 289 EESSTAQEGAETKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTV-ETI 347

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402
             + +L + ++ V V+   L           K    +    + +  A G+ +        
Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRKIDMTTFKEAIGTAAGLQADPNGNFTN 397

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           G  + + ++ F + +       + S ++         I A +   G L+  FL       
Sbjct: 398 G-QVNVVTVQFDQPKEEKKKEPEESGINW---WLFGGIPAGLLAFGGLVWFFL------- 446

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
                  K+ E   + +      +S  +   +P + I  +   +        L  ++   
Sbjct: 447 -ARRKRKKEEEEYEEYLAEEEIAASNESIMEIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 505

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550
                          + E  AK+++KW 
Sbjct: 506 TK------------EHVEGTAKVIKKWL 521


>gi|332297609|ref|YP_004439531.1| flagellar M-ring protein FliF [Treponema brennaborense DSM 12168]
 gi|332180712|gb|AEE16400.1| flagellar M-ring protein FliF [Treponema brennaborense DSM 12168]
          Length = 568

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 104/595 (17%), Positives = 211/595 (35%), Gaps = 76/595 (12%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            ++  + + +   T + +   +IL  +I V I   +    F   P    L+  + ++DV+
Sbjct: 7   KLVSSIKELWAKWTLIQK---IILFGIIAVVIAALVFMLRFSAKPATVPLF-NVAITDVS 62

Query: 62  R---ISVALSEANIDFRISDNGSSISVPSSMVGK-ARIHLAAQGLPSSSSNSGYELFDKV 117
               I   LS+ N++  ++  G  ISV      +  R  L  + L  ++ +         
Sbjct: 63  ARDNILYRLSQENVEAEVNAAG-VISVKDEQTARRMRSVLVREDLVPTNVDPWA--LFDT 119

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
             + +T F + +   R++   + + I+++  I +A V I +P+   F       TASV+I
Sbjct: 120 ERWTITDFERNVNLQRSITQMVKQHIEALDDIDSANVVITLPERTLFASDQNPTTASVII 179

Query: 178 RAINPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILG 228
                S      K  + I+ L+  AV  L   ++T+ DSTG+++   E        +I+ 
Sbjct: 180 YPKPGSDIADNKKKIQGIQKLLLRAVEGLKEENITIADSTGRIVNDFEGMAASERVDIVA 239

Query: 229 KSLSIVQAIQHEIEMNINKALAAFLGVDNFRS-AVVAELNMDTQQIREIVYDP-----DS 282
           K   +++ ++ E   ++ K+L    G D  R   +  +++M  +Q+    Y P     D+
Sbjct: 240 KEQKLIKQLEMEYRASVLKSLQQIFGTDRVRDLNIKIDMDMSKKQVAGTEYSPIVIKADN 299

Query: 283 KV------------ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD 330
                           S              PE    VE   P V      L    E T 
Sbjct: 300 PNTPYDDSELRDYLPISSETVTKVWTGTGYNPEGPAGVEGQNPPVYSDMSNLYGKSEETG 359

Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS------------ADQ 378
            K+   N  INTK          ++R++++V ++         +                
Sbjct: 360 VKQ---NNVINTKEYQEEKSP-SIDRVTVSVNIDGTWRRTYDDKGQLVLNPNGTIAREYV 415

Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFAT 438
               + L+   K+V  A G N  RGD++T+ ++ +     F    +         +    
Sbjct: 416 PVDSAVLSSAAKLVQDAIGYNRNRGDSVTVQNIQYDRTAQFEEEDMAYIRAQQQRKTIML 475

Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498
           VI  +  ++   +V                     +  +           +         
Sbjct: 476 VIAGIAVVLLAFMVFRF------------------ISRELERRRRLREEEILRRNQMERE 517

Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             L  + Q     + +++ R  + + + +      M + + E  A ++R W   E
Sbjct: 518 KTLWEAEQAGMEVTMSVEERHRAELQENAIT----MAKEHPEDVAMLIRTWLMEE 568


>gi|229172393|ref|ZP_04299952.1| Flagellar M-ring protein fliF [Bacillus cereus MM3]
 gi|228610864|gb|EEK68127.1| Flagellar M-ring protein fliF [Bacillus cereus MM3]
          Length = 524

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 96/568 (16%), Positives = 218/568 (38%), Gaps = 68/568 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++++    +   SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDTDKQEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  LS+  +D++++ +GS I V  +     R  +   GLP +S +    L +  +S G +
Sbjct: 56  TAELSKLGVDYQLAADGS-IRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112

Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178
              +++ +     + LE +I R   +   +  A V I +P+    F +  A+ TA++ + 
Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169

Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-----RNILGKSL 231
                         I+ +++AAVP +   +V+V+DS   +++    E      +   K +
Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            + Q I+ +++ +I+  L      + ++      +N D    +   Y  D  V RS +  
Sbjct: 230 EMQQQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288

Query: 292 KDAQRSETSQ---PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           +++  ++        + +T    +P+         + + +     +  NYEI+     T 
Sbjct: 289 EESSTAQEGAETKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTV-ETI 347

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402
             + +L + ++ V V+   L           K    +    + +  A G+ +        
Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRKIDMTTFKEAIGTAAGLQADPNGNFTN 397

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           G  + + ++ F + +       + S ++         I A +  +G  LV FL       
Sbjct: 398 G-QVNVVTVQFDQPKEEKKKEPEESGINW---WLFGGIPAGLLAIGG-LVWFL------- 445

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
           L      K+ E   + +      +S+ +   +P + I  +   +        L  +++  
Sbjct: 446 LARRKRKKEEEEYEEYLAEEEIAASSESIMEIPEEKIVPEPKPEPEEPKEPTLDEQVHDA 505

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550
                          + E  AK+++KW 
Sbjct: 506 TK------------EHVEGTAKVIKKWL 521


>gi|118477182|ref|YP_894333.1| flagellar MS-ring protein [Bacillus thuringiensis str. Al Hakam]
 gi|118416407|gb|ABK84826.1| flagellar M-ring protein [Bacillus thuringiensis str. Al Hakam]
          Length = 524

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 93/568 (16%), Positives = 214/568 (37%), Gaps = 68/568 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++++    +   SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKLEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  LS+  +D++++ +G SI V  +     R  +   GLP +S +    L +  +S G +
Sbjct: 56  TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112

Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178
              +++ +     + LE +I R   +   +  A V I +P+    F +  A+ TA++ + 
Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169

Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-----RNILGKSL 231
                         I+ +++AAVP +   +V+V+DS   +++    E      +   K +
Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            +   I+ +++ +I+  L      + ++      +N D    +   Y  D  V RS +  
Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288

Query: 292 KDAQRSETSQ---PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           +++  ++        + +T    +P+         + + +     +  NYEI+     T 
Sbjct: 289 EESSTAQEGAETKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTV-ETI 347

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402
             + +L + ++ V V+   L           K    +    + +  A G+ +        
Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRKIDMTTFKEAIGTAAGLQADPNGNFTN 397

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           G  + + ++ F + +       + S ++         I A +  +G L+  FL       
Sbjct: 398 G-QVNVVTVQFDQPKEEKKKEPEESGINW---WLFGGIPAGLLAIGGLVWFFL------- 446

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
                  K+ E   + +      +S  +   +P + I  +   +        L  ++   
Sbjct: 447 -ARRKRKKEEEEYEEYLAEEEIAASNESIMEIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 505

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550
                          + E  AK+++KW 
Sbjct: 506 TK------------EHVEGTAKVIKKWL 521


>gi|229121298|ref|ZP_04250529.1| Flagellar M-ring protein fliF [Bacillus cereus 95/8201]
 gi|228662143|gb|EEL17752.1| Flagellar M-ring protein fliF [Bacillus cereus 95/8201]
          Length = 524

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 95/568 (16%), Positives = 215/568 (37%), Gaps = 68/568 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++++    +   SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  LS+  +D++++ +G SI V  +     R  +   GLP +S +    L +  +S G +
Sbjct: 56  TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112

Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178
              +++ +     + LE +I R   +   +  A V I +P+    F +  A+ TA++ + 
Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169

Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-----RNILGKSL 231
                         I+ +++AAVP +   +V+V+DS   +++    E      +   K +
Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            +   I+ +++ +I+  L      + ++      +N D    +   Y  D  V RS +  
Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288

Query: 292 KDAQRSETSQ---PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           +++  ++        + +T    +P+         + + +     +  NYEI+     T 
Sbjct: 289 EESSTAQEGAETKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTV-ETI 347

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402
             + +L + ++ V V+   L           K    +    + +  A G+ +        
Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRKMDMTTFKEAIGTAAGLQADPNGNFTN 397

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           G  + + ++ F + +       + S ++         I A +  +G  LV FL       
Sbjct: 398 G-QVNVVTVQFDQPKEEKKKEPEESGINW---WLFGGIPAGLLAIGG-LVWFL------- 445

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
           L      K+ E   + +      +S  +   +P + I  +   +        L  ++   
Sbjct: 446 LARRKRKKEEEEYEEYLAEEEIAASNESIMEIPEEKIVPEPKPEPEKPKEPTLDEQVQDA 505

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550
                          + E  AK+++KW 
Sbjct: 506 TK------------EHVEGTAKVIKKWL 521


>gi|229109203|ref|ZP_04238802.1| Flagellar M-ring protein fliF [Bacillus cereus Rock1-15]
 gi|228674213|gb|EEL29458.1| Flagellar M-ring protein fliF [Bacillus cereus Rock1-15]
          Length = 524

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 96/568 (16%), Positives = 217/568 (38%), Gaps = 68/568 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++++    +   SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKMKNVIQ---SLKMWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  LS+  +D++++ +G SI V  +     R  +   GLP +S +    L +  +S G +
Sbjct: 56  TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112

Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178
              +++ +     + LE +I R   +   +  A V I +P+    F +  A+ TA++ + 
Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169

Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSL 231
                         I+ +++AAVP +   +V+V+DS   +++    E      +   K +
Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            +   ++ +++ +I+  L      + ++      +N D    +   Y  D  V RS +  
Sbjct: 230 EMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288

Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           +++  ++        + +T    +P+         + + +     +  NYEI+     T 
Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTV-ETI 347

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402
             + +L + ++ V V+   L           K    +    + +  A G+ +        
Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRRIDMTTFKEAIGTAAGLQADPNGNFIN 397

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           G  + + ++ F + +       + S M+         I A +  +G  LV FL       
Sbjct: 398 G-QVNVVTVQFDQPKAEKEKEPEKSGMNW---WLFGGITAGLLAIGG-LVWFL------- 445

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
           L +    K+ E  G+ +      +S  +   +P + I  +   +        L  ++   
Sbjct: 446 LASRKRKKEEEEYGEYLAEDEIAASNESILEIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 505

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550
                          + E  AK+++KW 
Sbjct: 506 TK------------EHVEGTAKVIKKWL 521


>gi|229043500|ref|ZP_04191210.1| Flagellar M-ring protein fliF [Bacillus cereus AH676]
 gi|228725878|gb|EEL77125.1| Flagellar M-ring protein fliF [Bacillus cereus AH676]
          Length = 524

 Score =  227 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 94/568 (16%), Positives = 213/568 (37%), Gaps = 68/568 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++++    +   SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  LS+  +D++++ +G SI V  +     R  +   GLP +S +    L +  +S G +
Sbjct: 56  TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112

Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178
              +++ +     + LE +I R   +   +  A V I +P+    F +  A+ TA++ + 
Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169

Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSL 231
                         I+ +++AAVP +   +V+V+DS   +++    E      +   K +
Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            +   ++ +++ +I+  L      + ++      +N D    +   Y  D  V RS +  
Sbjct: 230 EMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288

Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           +++  ++        + +T    +P+         + + +     +  NYEI+       
Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTVETIK 348

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402
               +L + ++ V V+   L           K    +    + +  A G+ +        
Sbjct: 349 KHP-ELTKTNVVVWVDNDTLV----------KRRIDMTTFKEAIGTAAGLQADPNGNFIN 397

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           G  + + ++ F  +Q       +    D+    F  +   L+ + G  LV FL       
Sbjct: 398 G-QVNVVTVQF--DQPKAEKEKEPEKSDMNWWLFGGITAGLLAIGG--LVWFL------- 445

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
           L      K+ E   + +      +S  +   +P + I  +   +        L  ++   
Sbjct: 446 LARRKRKKEEEEYEEYLAEDEIAASNESILEIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 505

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550
                          + E  AK+++KW 
Sbjct: 506 TK------------EHVEGTAKVIKKWL 521


>gi|196045123|ref|ZP_03112356.1| putative flagellar M-ring protein FliF [Bacillus cereus 03BB108]
 gi|196024125|gb|EDX62799.1| putative flagellar M-ring protein FliF [Bacillus cereus 03BB108]
          Length = 524

 Score =  227 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 96/568 (16%), Positives = 215/568 (37%), Gaps = 68/568 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++++    +   SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  LS+  +D++++ +G SI V  +     R  +   GLP +S +    L +  +S G +
Sbjct: 56  TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112

Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178
              +++ +     + LE +I R   +   +  A V I +P+    F +  A+ TA++ + 
Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169

Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSL 231
                         I+ +++AAVP +   +V+V+DS   +++    E      +   K +
Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            +   I+ +++ +I+  L      + ++      +N D    +   Y  D  V RS +  
Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288

Query: 292 KDAQRSETSQ---PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           +++  ++        + +T    +P+         + + +     +  NYEI+     T 
Sbjct: 289 EESSTAQEGAETKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTV-ETI 347

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI------NSRR 402
             + +L + ++ V V+   L           K    +    + +  A G+      N   
Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRKIDMTTFKEAIGTAAGLQVDPNGNFTN 397

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           G  + + ++ F + +       + S ++         I A +  +G  LV FL       
Sbjct: 398 G-QVNVVTVQFDQPKEEKKKEQEESGINW---WLFGGIPAGLLAIGG-LVWFL------- 445

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
           L      K+ E   + +      +S  +   +P + I  +   +        L  ++   
Sbjct: 446 LARRKRKKEEEEYEEYLAEEEIAASNESIMEIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 505

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550
                          + E  AK+++KW 
Sbjct: 506 TK------------EHVEGTAKVIKKWL 521


>gi|220929468|ref|YP_002506377.1| flagellar M-ring protein FliF [Clostridium cellulolyticum H10]
 gi|219999796|gb|ACL76397.1| flagellar M-ring protein FliF [Clostridium cellulolyticum H10]
          Length = 523

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 106/562 (18%), Positives = 211/562 (37%), Gaps = 55/562 (9%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +L  LL F+K      +TRI I+  V++V         F +  P Y  +      +DV  
Sbjct: 8   LLKPLLDFWKGLDKSQKTRIFIITGVVVVS---VGIGLFLITRPTYTTVISNASSADVAA 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +   L E  I ++++D+ S I V      +A   L      S+ S SG+   D +++  +
Sbjct: 65  MQKILKEKGISYKLTDDKSGIIVNEKDSDEAHFEL------STGSKSGFTFADALSNLKI 118

Query: 123 TSFMQEITRVRAL--EGEIARTIQSISGIVAARVHIVMPDMGSFRKIG--ARPTASVMIR 178
            +   +   +     E +IAR ++    I  A V IV P+              ASV+I 
Sbjct: 119 NTTESDKKHIWQQLDESDIARQLKLFQNIEDANVTIVRPEKTLLIDDSNSKDAKASVVIT 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQAI 237
             +    K AE+I  LVA++V  LD  +VTV+D+ G +L  + E   +       + +  
Sbjct: 179 PKDEISAKQAESIVKLVASSVEGLDPKNVTVVDNKGNILNIDSESGMDKTSTQYDMKKKY 238

Query: 238 QHEIEMNINKALAAFLG-VDNFRSAVVAELNMDTQQIREIVY-DPDSKVERSIRLSKDAQ 295
           ++++E N+ + L   L   D  +  V   L+ DT       Y +P+     +I   ++ +
Sbjct: 239 KNDLERNLREVLVDQLDSFDTAKVVVNPVLDFDTLTQSSKEYTNPNGADSGAILSRQETR 298

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL- 354
               +          + P  +          ++  K +   N++ N  +        +L 
Sbjct: 299 EDLKNGDTGGTPGVNSNPGTTPTYPAGSDDSKSYKKSDLTENFQYNETNKQIEKSLGELI 358

Query: 355 -ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
            ER S A+ +  G       +       D  + ++  + S ATGI +     I +T +  
Sbjct: 359 PERSSAAITLLYGNRVLDDSK-----LNDEMITQVKNLASMATGIPAE---NIAVTKLK- 409

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
           ++  +  + +   +  +++S +    + AL+ +   ++                      
Sbjct: 410 IQPPVVETPSTADTIRNLISNYGLLALLALMAIAFVIIAL-------------------- 449

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
                   P      +   L  +DN A+ S               I++    +   ++  
Sbjct: 450 --------PKKSKQKLEPALAVDDNAAITSPKFVYNEIRPEPVPEIDTEERSEVKKQIDK 501

Query: 534 MIEINEERFAKILRKWARSEIE 555
            ++   +  A++LR W   + E
Sbjct: 502 FVKQKPDAVAQLLRNWLTDDYE 523


>gi|228938860|ref|ZP_04101460.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228971741|ref|ZP_04132362.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978350|ref|ZP_04138727.1| Flagellar M-ring protein fliF [Bacillus thuringiensis Bt407]
 gi|228781367|gb|EEM29568.1| Flagellar M-ring protein fliF [Bacillus thuringiensis Bt407]
 gi|228787831|gb|EEM35789.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228820709|gb|EEM66734.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326939360|gb|AEA15256.1| flagellar MS-ring protein [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 524

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 95/568 (16%), Positives = 215/568 (37%), Gaps = 68/568 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++++    +   SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDTDKQEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  LS+  +D++++ +G SI V  +     R  +   GLP +S +    L +  +S G +
Sbjct: 56  TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112

Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178
              +++ +     + LE +I R   +   +  A V I +P+    F +  A+ TA++ + 
Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169

Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSL 231
                         I+ +++AAVP +   +V+V+DS   +++    E      +   K +
Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGTDEAHSSSSSSYEKEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            +   ++ +++ +I+  L      + ++      +N D    +   Y  D  V RS +  
Sbjct: 230 EMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288

Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           +++  ++        + +T    +P+         + + +     +  NYEI+     T 
Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTV-ETI 347

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402
             + +L + ++ V V+   L           K    +    + +  A G+ +        
Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRRMDMTTFKEAIGTAAGLQADPNGNFIN 397

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           G  + + ++ F + +       + S M+         I A +  +G  LV FL       
Sbjct: 398 G-QVNVVTVQFDQPKAEKEKEPEKSGMNW---WLFGGITAGLLAIGG-LVWFL------- 445

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
           L      K+ E   + +      +S  +   +P + I  +   +        L  ++   
Sbjct: 446 LARRKRKKEEEEYEEYLAEDEIAASNESILEIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 505

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550
                          + E  AK+++KW 
Sbjct: 506 TK------------EHVEGTAKVIKKWL 521


>gi|75761142|ref|ZP_00741134.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218896679|ref|YP_002445090.1| putative flagellar M-ring protein FliF [Bacillus cereus G9842]
 gi|228900328|ref|ZP_04064558.1| Flagellar M-ring protein fliF [Bacillus thuringiensis IBL 4222]
 gi|74491370|gb|EAO54594.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218541808|gb|ACK94202.1| putative flagellar M-ring protein FliF [Bacillus cereus G9842]
 gi|228859363|gb|EEN03793.1| Flagellar M-ring protein fliF [Bacillus thuringiensis IBL 4222]
          Length = 525

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 91/568 (16%), Positives = 212/568 (37%), Gaps = 67/568 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++++    +   SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDTDKQEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  LS+  +D++++ +G SI V  +     R  +   GLP +S +    L +  +S G +
Sbjct: 56  TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112

Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178
              +++ +     + LE +I R   +   +  A V I +P+    F +  A+ TA++ + 
Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169

Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSL 231
                         I+ +++AAVP +   +V+V+DS   +++    E      +   K +
Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            +   ++ +++ +I+  L      + ++      +N D    +   Y  D  V RS +  
Sbjct: 230 EMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288

Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           +++  ++        + +T    +P+         + + N     +  NYEI+       
Sbjct: 289 EESSTAQEGTDTKQSAGITANGEVPNYGTNNNQNGKVVYNNKNGNKIENYEIDKTVETIK 348

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402
               +L + ++ V V+   L           K    +    + +  A G+ +        
Sbjct: 349 KHP-ELTKTNVVVWVDNDTLV----------KRRMDMTTFKEAIGTAAGLQADPNGNFIN 397

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           G  + + ++ F + ++      + S M+         I A +  +G L+   L       
Sbjct: 398 G-QVNVVTVQFDQPKVEKEKEPEKSGMNW---WLFGGITAGLLAIGGLVWFLLA------ 447

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
                  ++ E   + +      +S  +   +P + I  +   +        L  ++   
Sbjct: 448 -RRKRKKEEEEEYEEYLAEDEIAASNESILEIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 506

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550
                          + E  AK+++KW 
Sbjct: 507 TK------------EHVEGTAKVIKKWL 522


>gi|296502346|ref|YP_003664046.1| flagellar MS-ring protein [Bacillus thuringiensis BMB171]
 gi|296323398|gb|ADH06326.1| flagellar MS-ring protein [Bacillus thuringiensis BMB171]
          Length = 524

 Score =  227 bits (578), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 93/568 (16%), Positives = 213/568 (37%), Gaps = 68/568 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++++    +   SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  LS+  +D++++ +G SI V  +     R  +   GLP +S +    L +  +S G +
Sbjct: 56  TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112

Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178
              +++ +     + LE +I R   +   +  A V I +P+    F +  A+ TA++ + 
Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169

Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSL 231
                         I+ +++AAVP +   +V+V+DS   +++    E      +   K +
Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            +   ++ +++ +I+  L      + ++      +N D    +   Y  D  V RS +  
Sbjct: 230 EMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288

Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           +++  ++        + +T    +P+         + + +     +  NYEI+       
Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTVETIK 348

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402
               +L + ++ V V+   L           K    +    + +  A G+ +        
Sbjct: 349 KHP-ELTKTNVVVWVDNDTLV----------KRRIDMTTFKEAIGTAAGLQADPNGNFIN 397

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           G  + + ++ F  +Q       +    D+    F  +   L+ + G  +V FL       
Sbjct: 398 G-QVNVVTVQF--DQPKAEKEKEPEKSDMNWWLFGGITAGLLAIGG--IVWFL------- 445

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
           L      K+ E   + +      +S  +   +P + I  +   +        L  ++   
Sbjct: 446 LARRKRKKEEEEYEEYLAEDEIAASNESILEIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 505

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550
                          + E  AK+++KW 
Sbjct: 506 TK------------EHVEGTAKVIKKWL 521


>gi|300117335|ref|ZP_07055125.1| flagellar MS-ring protein [Bacillus cereus SJ1]
 gi|298725170|gb|EFI65822.1| flagellar MS-ring protein [Bacillus cereus SJ1]
          Length = 520

 Score =  226 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 94/568 (16%), Positives = 215/568 (37%), Gaps = 72/568 (12%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++++    +   SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  LS+  +D++++ +G SI V  +     R  +   GLP +S +    L +  +S G +
Sbjct: 56  TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112

Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178
              +++ +     + LE +I R   +   +  A V I +P+    F +  A+ TA++ + 
Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169

Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-----RNILGKSL 231
                         I+ +++AAVP +   +V+V+DS   +++    E      +   K +
Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            +   I+ +++ +I+  L      + ++      +N D    +   Y  D  V RS +  
Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288

Query: 292 KDAQRSETSQ---PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           +++  ++        + +T    +P+         + + +     +  NYEI+     T 
Sbjct: 289 EESSTAQEGAETKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTV-ETI 347

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402
             + +L + ++ V V+   L           K    +    + +  A G+ +        
Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRKIDMTTFKEAIGTAAGLQADPNGNFTN 397

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           G  + + ++ F + +       + S ++         I A +  +G L+  FL       
Sbjct: 398 G-QVNVVTVQFDQPKEEKPKEPEESGINW---WLFGGIPAGLLAIGGLVWFFL------- 446

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
                  K+ E   + +      +S+ +   +P + I  +       +    +Q     +
Sbjct: 447 -ARRKRKKEEEEYEEYLAEEEIAASSESIMEIPEEKIVPEPEEPKEPTLDEQVQDATKEH 505

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550
           V                E  AK+++KW 
Sbjct: 506 V----------------EGTAKVIKKWL 517


>gi|30019791|ref|NP_831422.1| flagellar MS-ring protein [Bacillus cereus ATCC 14579]
 gi|229127072|ref|ZP_04256071.1| Flagellar M-ring protein fliF [Bacillus cereus BDRD-Cer4]
 gi|229144358|ref|ZP_04272764.1| Flagellar M-ring protein fliF [Bacillus cereus BDRD-ST24]
 gi|29895336|gb|AAP08623.1| Flagellar M-ring protein fliF [Bacillus cereus ATCC 14579]
 gi|228639145|gb|EEK95569.1| Flagellar M-ring protein fliF [Bacillus cereus BDRD-ST24]
 gi|228656425|gb|EEL12264.1| Flagellar M-ring protein fliF [Bacillus cereus BDRD-Cer4]
          Length = 524

 Score =  226 bits (577), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 94/568 (16%), Positives = 213/568 (37%), Gaps = 68/568 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++++    +   SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  LS+  +D++++ +G SI V  +     R  +   GLP +S +    L +  +S G +
Sbjct: 56  TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112

Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178
              +++ +     + LE +I R   +   +  A V I +P+    F +  A+ TA++ + 
Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169

Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSL 231
                         I+ +++AAVP +   +V+V+DS   +++    E      +   K +
Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            +   ++ +++ +I+  L      + ++      +N D    +   Y  D  V RS +  
Sbjct: 230 EMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288

Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           +++  ++        + +T    +P+         + + +     +  NYEI+       
Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTVETIK 348

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402
               +L + ++ V V+   L           K    +    + +  A G+ +        
Sbjct: 349 KHP-ELTKTNVVVWVDNDTLV----------KRRIDMTTFKEAIGTAAGLQADPNGNFIN 397

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           G  + + ++ F + +       + S M+         I A +  +G  LV FL       
Sbjct: 398 G-QVNVVTVQFDQPKAEKEKEPEKSGMNW---WLFGGITAGLLAIGG-LVWFL------- 445

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
           L      K+ E   + +      +S  +   +P + I  +   +        L  ++   
Sbjct: 446 LARRKRKKEEEEYEEYLAEDEIAASNESILEIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 505

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550
                          + E  AK+++KW 
Sbjct: 506 TK------------EHVEGTAKVIKKWL 521


>gi|229069298|ref|ZP_04202588.1| Flagellar M-ring protein fliF [Bacillus cereus F65185]
 gi|228713785|gb|EEL65670.1| Flagellar M-ring protein fliF [Bacillus cereus F65185]
          Length = 524

 Score =  226 bits (577), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 95/568 (16%), Positives = 215/568 (37%), Gaps = 68/568 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++++    +   SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDTDKQEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  LS+  +D++++ +G SI V  +     R  +   GLP +S +    L +  +S G +
Sbjct: 56  TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112

Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178
              +++ +     + LE +I R   +   +  A V I +P+    F +  A+ TA++ + 
Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169

Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSL 231
                         I+ +++AAVP +   +V+V+DS   +++    E      +   K +
Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGTDEAHSSSSSSYEKEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            +   ++ +++ +I+  L      + ++      +N D    +   Y  D  V RS +  
Sbjct: 230 EMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288

Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           +++  ++        + +T    +P+         + + +     +  NYEI+     T 
Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTV-ETI 347

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402
             + +L + ++ V V+   L           K    +    + +  A G+ +        
Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRKIDMTTFKEAIGTAAGLQADPNGNFIN 397

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           G  + + ++ F + +       + S M+         I A +  +G  LV FL       
Sbjct: 398 G-QVNVVTVQFDQPKAEKEKEPEKSGMNW---WLFGGITAGLLAIGG-LVWFL------- 445

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
           L      K+ E   + +      +S  +   +P + I  +   +        L  ++   
Sbjct: 446 LARRKRKKEEEEYEEYLAEEEIAASNESILEIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 505

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550
                          + E  AK+++KW 
Sbjct: 506 TK------------EHVEGTAKVIKKWL 521


>gi|229078928|ref|ZP_04211480.1| Flagellar M-ring protein fliF [Bacillus cereus Rock4-2]
 gi|228704342|gb|EEL56776.1| Flagellar M-ring protein fliF [Bacillus cereus Rock4-2]
          Length = 524

 Score =  226 bits (577), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 95/568 (16%), Positives = 215/568 (37%), Gaps = 68/568 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++++    +   SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  LS+  +D++++ +G SI V  +     R  +   GLP +S +    L +  +S G +
Sbjct: 56  TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112

Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178
              +++ +     + LE +I R   +   +  A V I +P+    F +  A+ TA++ + 
Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169

Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSL 231
                         I+ +++AAVP +   +V+V+DS   +++    E      +   K +
Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            +   ++ +++ +I+  L      + ++      +N D    +   Y  D  V RS +  
Sbjct: 230 EMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288

Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           +++  ++        + +T    +P+         + + +     +  NYEI+     T 
Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTV-ETI 347

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402
             + +L + ++ V V+   L           K    +    + +  A G+ +        
Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRKIDMTTFKEAIGTAAGLQADPNGNFIN 397

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           G  + + ++ F + +       + S M+         I A +  +G  LV FL       
Sbjct: 398 G-QVNVVTVQFDQPKAEKEKEPEKSGMNW---WLFGGITAGLLAIGG-LVWFL------- 445

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
           L      K+ E   + +      +S  +   +P + I  +   +        L  ++   
Sbjct: 446 LARRKRKKEEEEYEEYLAEEEIAASNESILEIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 505

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550
                          + E  AK+++KW 
Sbjct: 506 TK------------EHVEGTAKVIKKWL 521


>gi|49184575|ref|YP_027827.1| flagellar MS-ring protein [Bacillus anthracis str. Sterne]
 gi|65319014|ref|ZP_00391973.1| COG1766: Flagellar biosynthesis/type III secretory pathway
           lipoprotein [Bacillus anthracis str. A2012]
 gi|227815496|ref|YP_002815505.1| putative flagellar M-ring protein FliF [Bacillus anthracis str. CDC
           684]
 gi|254683235|ref|ZP_05147096.1| flagellar MS-ring protein [Bacillus anthracis str. CNEVA-9066]
 gi|254734587|ref|ZP_05192299.1| flagellar MS-ring protein [Bacillus anthracis str. Western North
           America USA6153]
 gi|254740996|ref|ZP_05198684.1| flagellar MS-ring protein [Bacillus anthracis str. Kruger B]
 gi|254755239|ref|ZP_05207273.1| flagellar MS-ring protein [Bacillus anthracis str. Vollum]
 gi|254759775|ref|ZP_05211799.1| flagellar MS-ring protein [Bacillus anthracis str. Australia 94]
 gi|49178502|gb|AAT53878.1| secretory protein of YscJ/FliF family (flagellar M-ring protein)
           [Bacillus anthracis str. Sterne]
 gi|227005826|gb|ACP15569.1| putative flagellar M-ring protein FliF [Bacillus anthracis str. CDC
           684]
          Length = 460

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 82/473 (17%), Positives = 188/473 (39%), Gaps = 48/473 (10%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++++    +   SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  LS+  +D++++ +G SI V  +     R  +   GLP +S +    L +  +S G +
Sbjct: 56  TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112

Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178
              +++ +     + LE +I R   +   +  A V I +P+    F +  A+ TA++ + 
Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169

Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-----RNILGKSL 231
                         I+ +++AAVP +   +V+V+DS   +++    E      +   K +
Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            +   I+ +++ +I+  L      + ++      +N D    +   Y  D  V RS +  
Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288

Query: 292 KDAQRSETSQ---PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           +++  ++        + +T    +P+         + + +     +  NYEI+     T 
Sbjct: 289 EESSTAQEGAETKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTV-ETI 347

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402
             + +L + ++ V V+   L           K    +    + +  A G+ +        
Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRKIDMTTFKEAIGTAAGLQADPNGNFTN 397

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455
           G  + + ++ F + +       + S ++         I A +  +G L+  FL
Sbjct: 398 G-QVNVVTVQFDQPKEEKKKEPEESGINW---WLFGGIPAGLLAIGGLVWFFL 446


>gi|229149948|ref|ZP_04278176.1| Flagellar M-ring protein fliF [Bacillus cereus m1550]
 gi|228633629|gb|EEK90230.1| Flagellar M-ring protein fliF [Bacillus cereus m1550]
          Length = 524

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 95/568 (16%), Positives = 215/568 (37%), Gaps = 68/568 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++++    +   SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  LS+  +D++++ +G SI V  +     R  +   GLP +S +    L +  +S G +
Sbjct: 56  TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112

Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178
              +++ +     + LE +I R   +   +  A V I +P+    F +  A+ TA++ + 
Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169

Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSL 231
                         I+ +++AAVP +   +V+V+DS   +++    E      +   K +
Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGTDEAHSSSSSSYEKEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            +   ++ +++ +I+  L      + ++      +N D    +   Y  D  V RS +  
Sbjct: 230 EMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288

Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           +++  ++        + +T    +P+         + + +     +  NYEI+     T 
Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTV-ETI 347

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402
             + +L + ++ V V+   L           K    +    + +  A G+ +        
Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRRIDMTTFKEAIGTAAGLQADPNGNFIN 397

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           G  + + ++ F + +       + S M+         I A +  +G  LV FL       
Sbjct: 398 G-QVNVVTVQFDQPKAEKEKEPEKSGMNW---WLFGGITAGLLAIGG-LVWFL------- 445

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
           L      K+ E   + +      +S  +   +P + I  +   +        L  ++   
Sbjct: 446 LARRKRKKEEEEYEEYLAEEEIAASNESILEIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 505

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550
                          + E  AK+++KW 
Sbjct: 506 TK------------EHVEGTAKVIKKWL 521


>gi|315123886|ref|YP_004065890.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315017608|gb|ADT65701.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 317

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 83/304 (27%), Positives = 146/304 (48%), Gaps = 12/304 (3%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPI---MLFMAARFFVNSPHYDNLYVKLEVS 58
            +L Q+ Q +++ T   R  I     V++  +    LF  +    N+  Y  L   +  S
Sbjct: 5   NMLHQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRGSGSNANN-GYAVLVENVSPS 63

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
               I   L + NI +++    + I VP   V + R+ +A++GL   S   G+E FD   
Sbjct: 64  SSAAIVAKLEQNNIPYKLESE-NKILVPQDQVYRQRMFIASEGLIKDSR-VGFEAFD-TQ 120

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178
           +FG T+  Q++   RA+EGE+ARTI+++  I +A VHI  P    F +    PTASV++ 
Sbjct: 121 AFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASVVVN 180

Query: 179 AINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQ 235
                    K  + I+++V+AAVP L   +V + D +G  L   E  E +++   +    
Sbjct: 181 VREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIKFKS 240

Query: 236 AIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
             +  +E  I + LA F  G+D  + +V  + +   Q+ +  +YDP+  + RS +   + 
Sbjct: 241 DQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPN-PIVRSEQTLNEE 299

Query: 295 QRSE 298
           +   
Sbjct: 300 RTGR 303


>gi|229189843|ref|ZP_04316854.1| Flagellar M-ring protein fliF [Bacillus cereus ATCC 10876]
 gi|228593651|gb|EEK51459.1| Flagellar M-ring protein fliF [Bacillus cereus ATCC 10876]
          Length = 524

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 95/568 (16%), Positives = 215/568 (37%), Gaps = 68/568 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++++    +   SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDTDKQEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  LS+  +D++++ +G SI V  +     R  +   GLP +S +    L +  +S G +
Sbjct: 56  TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112

Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178
              +++ +     + LE +I R   +   +  A V I +P+    F +  A+ TA++ + 
Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169

Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSL 231
                         I+ +++AAVP +   +V+V+DS   +++    E      +   K +
Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            +   ++ +++ +I+  L      + ++      +N D    +   Y  D  V RS +  
Sbjct: 230 EMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288

Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           +++  ++        + +T    +P+         + + +     +  NYEI+     T 
Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTV-ETI 347

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402
             + +L + ++ V V+   L           K    +    + +  A G+ +        
Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRRIDMTTFKEAIGTAAGLQADPNGNFIN 397

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           G  + + ++ F + +       + S M+         I A +  +G  LV FL       
Sbjct: 398 G-QVNVVTVQFDQPKAEKEKEPEKSGMNW---WLFGGITAGLLAIGG-LVWFL------- 445

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
           L      K+ E   + +      +S  +   +P + I  +   +        L  ++   
Sbjct: 446 LARRKRKKEEEEYEEYLAEEEIAASNESILEIPEEKIVPEPKAEPEEPKEPTLDEQVQDA 505

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550
                          + E  AK+++KW 
Sbjct: 506 TK------------EHVEGTAKVIKKWL 521


>gi|206970714|ref|ZP_03231666.1| putative flagellar M-ring protein FliF [Bacillus cereus AH1134]
 gi|228964729|ref|ZP_04125836.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|229178155|ref|ZP_04305526.1| Flagellar M-ring protein fliF [Bacillus cereus 172560W]
 gi|206734350|gb|EDZ51520.1| putative flagellar M-ring protein FliF [Bacillus cereus AH1134]
 gi|228605285|gb|EEK62735.1| Flagellar M-ring protein fliF [Bacillus cereus 172560W]
 gi|228794979|gb|EEM42478.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar sotto
           str. T04001]
          Length = 524

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 95/568 (16%), Positives = 215/568 (37%), Gaps = 68/568 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++++    +   SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDTDKQEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  LS+  +D++++ +G SI V  +     R  +   GLP +S +    L +  +S G +
Sbjct: 56  TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112

Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178
              +++ +     + LE +I R   +   +  A V I +P+    F +  A+ TA++ + 
Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169

Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSL 231
                         I+ +++AAVP +   +V+V+DS   +++    E      +   K +
Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            +   ++ +++ +I+  L      + ++      +N D    +   Y  D  V RS +  
Sbjct: 230 EMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288

Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           +++  ++        + +T    +P+         + + +     +  NYEI+     T 
Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTV-ETI 347

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402
             + +L + ++ V V+   L           K    +    + +  A G+ +        
Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRRIDMTTFKEAIGTAAGLQADPNGNFIN 397

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           G  + + ++ F + +       + S M+         I A +  +G  LV FL       
Sbjct: 398 G-QVNVVTVQFDQPKAEKEKEPEKSGMNW---WLFGGITAGLLAIGG-LVWFL------- 445

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
           L      K+ E   + +      +S  +   +P + I  +   +        L  ++   
Sbjct: 446 LARRKRKKEEEEYEEYLAEEEIAASNESILEIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 505

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550
                          + E  AK+++KW 
Sbjct: 506 TK------------EHVEGTAKVIKKWL 521


>gi|228958026|ref|ZP_04119762.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228801651|gb|EEM48532.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 524

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 95/568 (16%), Positives = 215/568 (37%), Gaps = 68/568 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++++    +   SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  LS+  +D++++ +G SI V  +     R  +   GLP +S +    L +  +S G +
Sbjct: 56  TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112

Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178
              +++ +     + LE +I R   +   +  A V I +P+    F +  A+ TA++ + 
Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169

Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSL 231
                         I+ +++AAVP +   +V+V+DS   +++    E      +   K +
Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            +   ++ +++ +I+  L      + ++      +N D    +   Y  D  V RS +  
Sbjct: 230 EMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288

Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           +++  ++        + +T    +P+         + + +     +  NYEI+     T 
Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTV-ETI 347

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402
             + +L + ++ V V+   L           K    +    + +  A G+ +        
Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRRIDMTTFKEAIGTAAGLQADPNGNFIN 397

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           G  + + ++ F + +       + S M+         I A +  +G  LV FL       
Sbjct: 398 G-QVNVVTVQFDQPKAEKEKEPEKSGMNW---WLFGGITAGLLAIGG-LVWFL------- 445

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
           L      K+ E   + +      +S  +   +P + I  +   +        L  ++   
Sbjct: 446 LARRKRRKEEEEYEEYLAEEEVAASNESILEIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 505

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550
                          + E  AK+++KW 
Sbjct: 506 TK------------EHVEGTAKVIKKWL 521


>gi|255025681|ref|ZP_05297667.1| flagellar MS-ring protein [Listeria monocytogenes FSL J2-003]
          Length = 550

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 101/550 (18%), Positives = 211/550 (38%), Gaps = 68/550 (12%)

Query: 42  FVNSPHYDN-LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           ++N+P  +  LY  L  +   +++  L++  +D+ +  +G+ I V   +    R   A  
Sbjct: 33  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA----LEGEIARTIQSISGIVAARVHI 156
           G+P +  +    L    +S G +   +++         LE EI ++  +   I +A V +
Sbjct: 92  GIPYTGQDGNDILL--NSSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TIDSASVQL 147

Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDST 213
            +P+  S F +   + TA+V ++  N      +    I+  V+AAVPN+   DV ++D+ 
Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207

Query: 214 GKLLTANEM----ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
             +++  +       +     + I  AI   ++ +I   L++   +DNFR      +N D
Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVAVNFD 267

Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
             +     Y  D KV  + +  S D  +   +  ES      ++P+ +++      +   
Sbjct: 268 EIKQNTEHYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTY-T 326

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           ++K  E +NYE+++           L + ++ V V++  L +              +AE 
Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQNALNKNGV----------DMAEF 375

Query: 389 NKIVSAATGINS-----------------------RRGDTITITSMDFLENQLFNSGTVQ 425
            K +  + G+                         + GD +TI  + FL+N         
Sbjct: 376 TKAIGVSAGLTPNMTTEEAGADGEAAAAPIFEGTFQNGD-VTIMPIQFLDNATPAEKDTT 434

Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485
                        +   L+F V         +  L+R   +++A + E         P  
Sbjct: 435 EKAEPASKAWIWWLAGGLLFAVIA-AGIITYIILLKRKEQLEEALEPEEKD----YIPAE 489

Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545
            + +     P+ N   D+ +         L++R      +    +L  M + +  R A +
Sbjct: 490 EAIINPEEHPDFNFQTDAFD----LSEPELKAR-----KESLKNKLGEMAKEDPGRAAAV 540

Query: 546 LRKWARSEIE 555
           ++KW     E
Sbjct: 541 IQKWLNERQE 550


>gi|16802755|ref|NP_464240.1| flagellar MS-ring protein [Listeria monocytogenes EGD-e]
 gi|47095279|ref|ZP_00232890.1| flagellar M-ring protein FliF [Listeria monocytogenes str. 1/2a
           F6854]
 gi|224498795|ref|ZP_03667144.1| flagellar MS-ring protein [Listeria monocytogenes Finland 1988]
 gi|224501982|ref|ZP_03670289.1| flagellar MS-ring protein [Listeria monocytogenes FSL R2-561]
 gi|254829370|ref|ZP_05234057.1| flagellar MS-ring protein [Listeria monocytogenes FSL N3-165]
 gi|254830296|ref|ZP_05234951.1| flagellar MS-ring protein [Listeria monocytogenes 10403S]
 gi|254900051|ref|ZP_05259975.1| flagellar MS-ring protein [Listeria monocytogenes J0161]
 gi|254911396|ref|ZP_05261408.1| flagellar MS-ring protein [Listeria monocytogenes J2818]
 gi|254935723|ref|ZP_05267420.1| flagellar MS-ring protein [Listeria monocytogenes F6900]
 gi|255028428|ref|ZP_05300379.1| flagellar MS-ring protein [Listeria monocytogenes LO28]
 gi|284801043|ref|YP_003412908.1| flagellar MS-ring protein [Listeria monocytogenes 08-5578]
 gi|284994185|ref|YP_003415953.1| flagellar MS-ring protein [Listeria monocytogenes 08-5923]
 gi|16410102|emb|CAC98791.1| lmo0713 [Listeria monocytogenes EGD-e]
 gi|47016350|gb|EAL07272.1| flagellar M-ring protein FliF [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258601784|gb|EEW15109.1| flagellar MS-ring protein [Listeria monocytogenes FSL N3-165]
 gi|258608307|gb|EEW20915.1| flagellar MS-ring protein [Listeria monocytogenes F6900]
 gi|284056605|gb|ADB67546.1| flagellar MS-ring protein [Listeria monocytogenes 08-5578]
 gi|284059652|gb|ADB70591.1| flagellar MS-ring protein [Listeria monocytogenes 08-5923]
 gi|293589334|gb|EFF97668.1| flagellar MS-ring protein [Listeria monocytogenes J2818]
          Length = 550

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 101/550 (18%), Positives = 211/550 (38%), Gaps = 68/550 (12%)

Query: 42  FVNSPHYDN-LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           ++N+P  +  LY  L  +   +++  L++  +D+ +  +G+ I V   +    R   A  
Sbjct: 33  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA----LEGEIARTIQSISGIVAARVHI 156
           G+P +  +    L    +S G +   +++         LE EI ++  +   I +A V +
Sbjct: 92  GIPYTGQDGNDILL--NSSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TIDSASVQL 147

Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDST 213
            +P+  S F +   + TA+V ++  N      +    I+  V+AAVPN+   DV ++D+ 
Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207

Query: 214 GKLLTANEM----ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
             +++  +       +     + I  AI   ++ +I   L++   +DNFR      +N D
Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVAVNFD 267

Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
             +     Y  D KV  + +  S D  +   +  ES      ++P+ +++      +   
Sbjct: 268 EIKQNTEHYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTY-T 326

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           ++K  E +NYE+++           L + ++ V V++  L +              +AE 
Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQNALNKNGV----------DMAEF 375

Query: 389 NKIVSAATGINS-----------------------RRGDTITITSMDFLENQLFNSGTVQ 425
            K +  + G+                         + GD +TI  + FL+N         
Sbjct: 376 TKAIGVSAGLTPNMTTEEAGADGEAAAAPTFEGTFQNGD-VTIMPIQFLDNATPAEKDTT 434

Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485
                        +   L+F V         +  L+R   +++A + E         P  
Sbjct: 435 EKAEPASKAWIWWLAGGLLFAVIA-AGIITYIILLKRKEQLEEALEPEEKD----YIPAE 489

Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545
            + +     P+ N   D+ +         L++R      +    +L  M + +  R A +
Sbjct: 490 EAIINPEEHPDFNFQTDAFD----LSEPELKAR-----KESLKNKLGEMAKEDPGRAAAV 540

Query: 546 LRKWARSEIE 555
           ++KW     E
Sbjct: 541 IQKWLNERQE 550


>gi|152975158|ref|YP_001374675.1| flagellar MS-ring protein [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152023910|gb|ABS21680.1| flagellar M-ring protein FliF [Bacillus cytotoxicus NVH 391-98]
          Length = 521

 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 92/569 (16%), Positives = 215/569 (37%), Gaps = 73/569 (12%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSDVNR 62
           ++++   F+   SL     +++ + IL    +   A  +   P  Y  +Y  L  +D   
Sbjct: 1   MEKIKNVFQ---SLKTWHKMVIGAAIL---AIGTGALLYFTLPDKYVVVYQNLNDADKQE 54

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I+  LS+  +D+++ ++G +I VP+      R  +   GLP +S +    L +  +S G 
Sbjct: 55  ITAELSKLGVDYQLVNDG-AIKVPTKDAPWIRKEMNGMGLPFNSKSGEEILLE--SSLGS 111

Query: 123 TSFMQEITRV----RALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMI 177
           +   +++ ++    + LE +I R   +I    +A V I +P+    F +  A+ TA++ +
Sbjct: 112 SEQDKKMKQLVGTKKQLEQDIVRNFATI---ESANVQITLPEKETIFDEEKAKGTAAITV 168

Query: 178 RAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-----ERNILGKS 230
                          I+ +++AAV  +   +V+V+DS   +++           +   K 
Sbjct: 169 GVKRGQLLTEDQVAGIQQMISAAVSGVKPEEVSVIDSKKGIVSKGADASTHASSSSYEKE 228

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290
           + + Q I+++++ +I+  L      + F+      +N D    +   Y  D  V RS + 
Sbjct: 229 VEMQQQIENKLKQDIDATLMTMFKANEFKVNTKVSVNYDEVTRQSEKYG-DKGVLRSRQD 287

Query: 291 SKDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
            ++   ++        + +T    +P+         + + + +   +  NYEI+     T
Sbjct: 288 QQERSTAQEGADAKQGAGITANGEVPNYGTNNNQNGKVVYDNNNGNKIENYEIDKTV-ET 346

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG--INSR---- 401
              + +L + ++ V V+   LT          K    +    + +  A G  I+      
Sbjct: 347 IKKHPELTKTNVVVWVDNDTLT----------KRRIDMTTFKEAIGTAAGLQIDPNGEFT 396

Query: 402 RGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461
            G  + + ++ F + +   +   + +  +             +      LV +L     R
Sbjct: 397 NG-QVNVVTVQFDQQKEEKTKEPEPNGFNWWLIGGIAGGLLAL----GGLVWYLLARRKR 451

Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521
           +   I++ +       +           T   +P + +      +        L  ++  
Sbjct: 452 KQEEIEEYESLAEEEVAATDE-------TIMEIPEEKL---EPTEQAEPTEPTLDEQVQD 501

Query: 522 YVSKQSDLRLLHMIEINEERFAKILRKWA 550
                         + + E  AK+++KW 
Sbjct: 502 ------------AAKEHVEGTAKVIKKWL 518


>gi|218232102|ref|YP_002366431.1| flagellar MS-ring protein [Bacillus cereus B4264]
 gi|218160059|gb|ACK60051.1| putative flagellar M-ring protein FliF [Bacillus cereus B4264]
          Length = 524

 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 94/568 (16%), Positives = 215/568 (37%), Gaps = 68/568 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++++    +   SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDTDKQEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  LS+  +D++++ +G SI V  +     R  +   GLP +S +    L +  +S G +
Sbjct: 56  TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112

Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178
              +++ +     + LE +I R   +   +  A V I +P+    F +  A+ TA++ + 
Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169

Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSL 231
                         I+ +++AAVP +   +V+V+DS   +++    E      +   K +
Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            +   ++ +++ +I+  L      + ++      +N D    +   Y  D  V RS +  
Sbjct: 230 EMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288

Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           +++  ++        + +T    +P+         + + +     +  NYEI+     T 
Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTV-ETI 347

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402
             + +L + ++ V V+   L           K    +    + +  A G+ +        
Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRRIDMTTFKEAIGTAAGLQADPNGNFIN 397

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           G  + + ++ F + +       + S ++         I A +  +G  LV FL       
Sbjct: 398 G-QVNVVTVQFDQPKAEKEKEPEKSGINW---WLFGGITAGLLAIGG-LVWFL------- 445

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
           L      K+ E   + +      +S  +   +P + I  +   +        L  ++   
Sbjct: 446 LARRKRKKEEEEYEEYLAEEEIAASNESILEIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 505

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550
                          + E  AK+++KW 
Sbjct: 506 TK------------EHVEGTAKVIKKWL 521


>gi|228907379|ref|ZP_04071237.1| Flagellar M-ring protein fliF [Bacillus thuringiensis IBL 200]
 gi|228852240|gb|EEM97036.1| Flagellar M-ring protein fliF [Bacillus thuringiensis IBL 200]
          Length = 524

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 95/568 (16%), Positives = 215/568 (37%), Gaps = 68/568 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++++    +   SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDTDKQEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  LS+  +D++++ +G SI V  +     R  +   GLP +S +    L +  +S G +
Sbjct: 56  TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112

Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178
              +++ +     + LE +I R   +   +  A V I +P+    F +  A+ TA++ + 
Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169

Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSL 231
                         I+ +++AAVP +   +V+V+DS   +++    E      +   K +
Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGTDEAHSSSSSSYEKEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            +   ++ +++ +I+  L      + ++      +N D    +   Y  D  V RS +  
Sbjct: 230 EMQHQLEGKLKQDIDATLMTMFKSNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288

Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           +++  ++        + +T    +P+         + + +     +  NYEI+     T 
Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTV-ETI 347

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402
             + +L + ++ V V+   L           K    +    + +  A G+ +        
Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRRIDMTTFKEAIGTAAGLQADPNGNFIN 397

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           G  + + ++ F + +       + S M+         I A +  +G  LV FL       
Sbjct: 398 G-QVNVVTVQFDQPKAEKEKEPEKSGMNW---WLFGGITAGLLAIGG-LVWFL------- 445

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
           L      K+ E   + +      +S  +   +P + I  +   +        L  ++   
Sbjct: 446 LARRKRKKEEEEYEEYLAEEEVAASNESILEIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 505

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550
                          + E  AK+++KW 
Sbjct: 506 TK------------EHVEGTAKVIKKWL 521


>gi|307264866|ref|ZP_07546428.1| secretory protein YscJ/FliF family protein [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306920124|gb|EFN50336.1| secretory protein YscJ/FliF family protein [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 253

 Score =  223 bits (569), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 62/248 (25%), Positives = 116/248 (46%), Gaps = 14/248 (5%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
              +QL  F+       + ++ I+A ++ + I L +   + VN P+Y  LY  L + D  
Sbjct: 7   NFREQLTNFWNKFDKKQKIQLGIIAILLFIGISLLV---YIVNRPNYVVLYSDLSIKDAG 63

Query: 62  RISVALSEA-NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK-VNS 119
            +   L     I ++IS++G++I VP+    + R+ LA +G+P      G+   D   NS
Sbjct: 64  AVVEKLKTEFKIPYKISNDGTTILVPAQYKDEVRMKLATEGIPQG----GFSFQDAMNNS 119

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARPTASVMI 177
              T   +    +  L+ EI  ++++I G+  A V+IV+PD  +F       + TA+VM+
Sbjct: 120 LATTDQERRQKYLYFLQNEIQNSLKTIDGVQDAIVNIVVPDQNAFVLSNTTNQATAAVML 179

Query: 178 RAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIV 234
                        + I   V+ +V  L   +VTV+D+ GK+LTA ++          ++ 
Sbjct: 180 TLKPGVTLSSSQVKGIIDFVSKSVEGLKPENVTVIDNNGKILTAESDTTAENANTQFALQ 239

Query: 235 QAIQHEIE 242
           +  +   +
Sbjct: 240 KKFKKTYK 247


>gi|226327719|ref|ZP_03803237.1| hypothetical protein PROPEN_01592 [Proteus penneri ATCC 35198]
 gi|225203423|gb|EEG85777.1| hypothetical protein PROPEN_01592 [Proteus penneri ATCC 35198]
          Length = 396

 Score =  223 bits (569), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 77/412 (18%), Positives = 156/412 (37%), Gaps = 54/412 (13%)

Query: 177 IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQ 235
           +            AI H+VA++V  +    VT++D +GKLLT  +   R++    L  VQ
Sbjct: 3   LLQGRALDEGQINAIVHIVASSVAGMPDSSVTIVDQSGKLLTQPDALGRDLNSIQLKYVQ 62

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            ++   +  I   L   +G  N  + V A+++    +     Y P+    ++   SK   
Sbjct: 63  ELESRYQQRIETLLGPIVGRGNVHAQVTAQVDFSHTEETAEEYKPNQPPNQAAVRSKQLS 122

Query: 296 RSETSQP---ESAVTVEQNMP----------------------HVSDRKVPLPRSLENTD 330
           +SE +             N P                      + +     L R+  +  
Sbjct: 123 QSEQNGGMLAGGVPGALSNQPVAPPQAPIETPKAQEGEKTEGTNATGTNRSLTRNPNSNS 182

Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL---------TEVLGRSADQGKI 381
           + +E +NYE++ +          +ERLS+AV+VN   +          E +  +      
Sbjct: 183 RLDETTNYEVDRRIRHIKRPVGNVERLSVAVIVNYKTVENKKEAAEGEEPVVETKLVPLT 242

Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441
           D  + +I  +V  A G +  RGD++++ +  F + +            +IL++       
Sbjct: 243 DEQIQQIEGLVREAMGYSQERGDSLSVVNSQFNDIEEKVITVPVWENPEILAKALDLGRW 302

Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501
            L+ ++  +L   L    + +    + A +  V              + T L   D++  
Sbjct: 303 LLLIIIAWILWRKLVKPQIEKRREAEAAAQKAV--------------LKTKLQVKDDV-- 346

Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
           D +  D  +  +  + R+++ +  Q   R+  M E +    A ++R+W   E
Sbjct: 347 DEAELDDEARRKQARKRVSAELQSQ---RIREMAEKDPRVVAMVIREWMSKE 395


>gi|228920457|ref|ZP_04083802.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228839087|gb|EEM84383.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 524

 Score =  223 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 94/568 (16%), Positives = 215/568 (37%), Gaps = 68/568 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++++    +   SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKMKNVIQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  LS+  +D++++ +G SI V  +     R  +   GLP +S +    L +  +S G +
Sbjct: 56  TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112

Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178
              +++ +     + LE +I R   +   +  A V I +P+    F +  A+ TA++ + 
Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169

Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSL 231
                         I+ +++AAVP +   +V+V+DS   +++    E      +   K +
Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            +   ++ +++ +I+  L      + ++      +N D    +   Y  D  V RS +  
Sbjct: 230 EMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288

Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           +++  ++        + +T    +P+         + + +     +  NYEI+     T 
Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTV-ETI 347

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402
             + +L + ++ V V+   L           K    +    + +  + G+ +        
Sbjct: 348 KKHPELTKTNVVVWVDNDTLV----------KRRIDMTTFKEAIGTSAGLQADPNGNFIN 397

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           G  + + ++ F + +       + S M+         I A +  +G  LV FL       
Sbjct: 398 G-QVNVVTVQFDQPKAEKEKEPEKSGMNW---WLFGGITAGLLAIGG-LVWFL------- 445

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
           L      K+ E   + +      +S  +   +P + I  +   +        L  ++   
Sbjct: 446 LARRKRKKEEEEYEEYLAEEEIAASNESILEIPEEKIVPEPKPEPEEPKEPTLDEQVQDA 505

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550
                          + E  AK+++KW 
Sbjct: 506 TK------------EHVEGTAKVIKKWL 521


>gi|313624697|gb|EFR94654.1| flagellar M-ring protein FliF [Listeria innocua FSL J1-023]
          Length = 549

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 104/549 (18%), Positives = 217/549 (39%), Gaps = 67/549 (12%)

Query: 42  FVNSPHYDN-LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           ++N+P  +  LY  L  +   +++  L++  +D+ +  +G+ I V   +    R   A  
Sbjct: 33  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA----LEGEIARTIQSISGIVAARVHI 156
           G+P +  +    L    +S G +   +++         LE EI ++  +   + +A V +
Sbjct: 92  GIPYTGQDGNDILL--NSSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TVDSASVQL 147

Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDST 213
            +P+  S F +   + TA+V ++  N      +    I+  V+AAVPN+   DV ++D+ 
Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTKEQVLGIQRTVSAAVPNVASDDVAIIDTK 207

Query: 214 GKLLTANEM----ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
             +++  +       +     + I  AI   ++ +I   L++   +DNFR      +N D
Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVTVNFD 267

Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
             +     Y  D KV  + +  S D  +  T+Q ES      ++P+ +++      +   
Sbjct: 268 EIKQNTEHYPNDGKVRSNQKDTSTDTSKGSTNQTESGTASNADVPNYTEQNGDDTNTY-T 326

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           ++K  E +NYE+++           L + ++ V V++  L +              +AE 
Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQQSLNKNGV----------DMAEF 375

Query: 389 NKIVSAATGINS----------------------RRGDTITITSMDFLENQLFNSGTVQV 426
            K +  + G+                        + GD +TI  + FL+NQ         
Sbjct: 376 TKAIGVSAGLTPNMTTEEAGEGGEAATPTFEGTFQNGD-VTIMPIQFLDNQTPVEKDTTE 434

Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486
                       ++ +L+F +    +    +  L+R   I++A + E         P   
Sbjct: 435 KAEPASKAWVWWLVGSLLFALIAAGIIAYIIF-LKRKEQIEEALEAEEKD----FIPAEE 489

Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546
           + V     P+ N   D+ +         L++R      +    +L  M + +  R A ++
Sbjct: 490 AIVNPEEHPDFNFQTDAFD----LSEPELKAR-----KESLKNKLGEMAKEDPGRAAAVI 540

Query: 547 RKWARSEIE 555
           +KW     E
Sbjct: 541 QKWLNERQE 549


>gi|16799796|ref|NP_470064.1| flagellar MS-ring protein [Listeria innocua Clip11262]
 gi|16413173|emb|CAC95953.1| lin0721 [Listeria innocua Clip11262]
          Length = 550

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 104/550 (18%), Positives = 217/550 (39%), Gaps = 68/550 (12%)

Query: 42  FVNSPHYDN-LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           ++N+P  +  LY  L  +   +++  L++  +D+ +  +G+ I V   +    R   A  
Sbjct: 33  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA----LEGEIARTIQSISGIVAARVHI 156
           G+P +  +    L    +S G +   +++         LE EI ++  +   + +A V +
Sbjct: 92  GIPYTGQDGNDILL--NSSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TVDSASVQL 147

Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDST 213
            +P+  S F +   + TA+V ++  N      +    I+  V+AAVPN+   DV ++D+ 
Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTKEQVLGIQRTVSAAVPNVASDDVAIIDTK 207

Query: 214 GKLLTANEM----ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
             +++  +       +     + I  AI   ++ +I   L++   +DNFR      +N D
Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVTVNFD 267

Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
             +     Y  D KV  + +  S D  +  T+Q ES      ++P+ +++      +   
Sbjct: 268 EIKQNTEHYPNDGKVRSNQKETSTDTSKGSTNQTESGTASNADVPNYTEQNGDDTNTY-T 326

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           ++K  E +NYE+++           L + ++ V V++  L +              +AE 
Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQQSLNKNGV----------DMAEF 375

Query: 389 NKIVSAATGINS-----------------------RRGDTITITSMDFLENQLFNSGTVQ 425
            K +  + G+                         + GD +TI  + FL+NQ        
Sbjct: 376 TKAIGVSAGLTPNMTTEEAGEGGEAAATPTFEGTFQNGD-VTIMPIQFLDNQTPVEKDTT 434

Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485
                        ++ +L+F +    +    +  L+R   I++A + E         P  
Sbjct: 435 EKAEPASKAWVWWLVGSLLFALIAAGIIAYIIF-LKRKEQIEEALEAEEKD----FIPAE 489

Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545
            + V     P+ N   D+ +         L++R      +    +L  M + +  R A +
Sbjct: 490 EAIVNPEEHPDFNFQTDAFD----LSEPELKAR-----KESLKNKLGEMAKEDPGRAAAV 540

Query: 546 LRKWARSEIE 555
           ++KW     E
Sbjct: 541 IQKWLNERQE 550


>gi|313620042|gb|EFR91558.1| flagellar M-ring protein FliF [Listeria innocua FSL S4-378]
          Length = 550

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 104/550 (18%), Positives = 217/550 (39%), Gaps = 68/550 (12%)

Query: 42  FVNSPHYDN-LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           ++N+P  +  LY  L  +   +++  L++  +D+ +  +G+ I V   +    R   A  
Sbjct: 33  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA----LEGEIARTIQSISGIVAARVHI 156
           G+P +  +    L    +S G +   +++         LE EI ++  +   + +A V +
Sbjct: 92  GIPYTGQDGNDILL--NSSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TVDSASVQL 147

Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDST 213
            +P+  S F +   + TA+V ++  N      +    I+  V+AAVPN+   DV ++D+ 
Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTKEQVLGIQRTVSAAVPNVASDDVAIIDTK 207

Query: 214 GKLLTANEM----ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
             +++  +       +     + I  AI   ++ +I   L++   +DNFR      +N D
Sbjct: 208 NGVISEADTSQEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVTVNFD 267

Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
             +     Y  D KV  + +  S D  +  T+Q ES      ++P+ +++      +   
Sbjct: 268 EIKQNTEHYPNDGKVRSNQKETSTDTSKGSTNQTESGTASNADVPNYTEQNGDDTNTY-T 326

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           ++K  E +NYE+++           L + ++ V V++  L +              +AE 
Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQQSLNKNGV----------DMAEF 375

Query: 389 NKIVSAATGINS-----------------------RRGDTITITSMDFLENQLFNSGTVQ 425
            K +  + G+                         + GD +TI  + FL+NQ        
Sbjct: 376 TKAIGVSAGLTPNMTTEEAGEGGEAAATPTFEGTFQNGD-VTIMPIQFLDNQTPVEKDTT 434

Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485
                        ++ +L+F +    +    +  L+R   I++A + E         P  
Sbjct: 435 EKAEPASKAWVWWLVGSLLFALIAAGIIAYIIF-LKRKEQIEEALEAEEKD----FIPAE 489

Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545
            + V     P+ N   D+ +         L++R      +    +L  M + +  R A +
Sbjct: 490 EAIVNPEEHPDFNFQTDAFD----LSEPELKAR-----KESLKNKLGEMAKEDPGRAAAV 540

Query: 546 LRKWARSEIE 555
           ++KW     E
Sbjct: 541 IQKWLNERQE 550


>gi|299822289|ref|ZP_07054175.1| flagellar M-ring protein FliF [Listeria grayi DSM 20601]
 gi|299815818|gb|EFI83056.1| flagellar M-ring protein FliF [Listeria grayi DSM 20601]
          Length = 554

 Score =  220 bits (560), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 102/570 (17%), Positives = 220/570 (38%), Gaps = 78/570 (13%)

Query: 26  ASVILVPIMLFMAARFFVNSPHYDN-LYVKLEVSDVNRISVALSEANIDFRISDNGSSIS 84
            ++++   ++   A  ++N P     L+  L  +   +++  L +  +D+ I  NG  I 
Sbjct: 17  VAILVGFFVIVTVALLYMNQPSTKVTLFKNLSETSQTQVTDELGKIGVDYTIDKNGD-IL 75

Query: 85  VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA----LEGEIA 140
           V  S+    R  +   G+P + ++    L    +S G +   +++         LE EI 
Sbjct: 76  VDKSVEKLVRDKMEEDGIPYTGTDGNDILL--NSSLGASEEDKKMQEQVGTKANLEKEIL 133

Query: 141 RTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAA 197
           ++  ++  + +A V + MP+    F +   + +A+V I+            + I+  V+A
Sbjct: 134 QSYSNV--VDSATVQMTMPESDSIFEEASQKGSAAVTIKTKGQMSLSTAQVQGIQRTVSA 191

Query: 198 AVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEMNINKALAAF 252
           A+PN++  +V V+DS   +++     A +   +     + I  AI  +I+ +I   L++ 
Sbjct: 192 AIPNINAEEVAVIDSKRGVVSDSATTAKDEGSSAYKNEVDIQDAIGKDIKTDIEDTLSSI 251

Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNM 312
             + NFR      +N D  + +   Y  D KV    + S   + + ++   S      ++
Sbjct: 252 FALKNFRVNTNVTVNFDEIKQKTEKYPRDGKVRSEQKDSTTDKSTGSAGQASGTESNADV 311

Query: 313 PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372
           P+ ++       +   ++K  E +NYE+++           L + ++ V V++  L    
Sbjct: 312 PNYTENGGNSDSTY-TSEKNSETTNYELDSTMQEIKKHP-ALAKTNVVVWVDQNTL---- 365

Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSR----RGD------------------------ 404
               D  ++D  + E  K V  A G+        GD                        
Sbjct: 366 ----DANRVD--MNEFTKAVGVAAGLTPNMTDPNGDGGGNANANADGNGTNQEVFDGTFK 419

Query: 405 --TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
              +TI  + FL++          +     +  +  + + L+ L+   +V ++    L+R
Sbjct: 420 NGEVTIMPITFLKDDTAAPTAKPAAKPASHAWVWWILGSTLLLLIAGGIVFYIIW--LKR 477

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
              I++A   +          P  + V   L    +  +D    D  +    L  R N  
Sbjct: 478 KEQIEEAIAED-------YISPEEALVEKELSEQPDFQID---PDAMTEPSILTRRENLK 527

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARS 552
                  ++  + + +  R A I++KW   
Sbjct: 528 E------KISDLAKEDPGRAAAIIQKWLNE 551


>gi|225569979|ref|ZP_03779004.1| hypothetical protein CLOHYLEM_06074 [Clostridium hylemonae DSM
           15053]
 gi|225161449|gb|EEG74068.1| hypothetical protein CLOHYLEM_06074 [Clostridium hylemonae DSM
           15053]
          Length = 536

 Score =  220 bits (560), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 100/569 (17%), Positives = 204/569 (35%), Gaps = 62/569 (10%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L QL  F    +   +   +I  +  +  I   +     +N   Y  L+  +   +  +I
Sbjct: 8   LGQLKDFLGKYS---KKTKIIAGTAAVAVIAAAVIIALVLNHKDYTTLFTGVTEEEATKI 64

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L E+ +DF+  +NG  I V   +  K R  L  +G P S     Y++F + +    T
Sbjct: 65  IGKLQESGVDFQYKENGD-ILVDEKVADKTRADLVYEGYPKSGFT--YDVFTENSGGMTT 121

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA-----RPTASVMIR 178
              +E  ++  L+  I  TI+   G+  A+V+I + +   +           P+ASV++ 
Sbjct: 122 DSEKETYKLYDLQDRIGATIRFFDGVKDAKVNIALKEEQKYVLEEDGEKAGTPSASVVVT 181

Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL--SIV 234
             +      K A AI+ LVA +VP ++M +V V D  G  ++ N+   +  G +    I 
Sbjct: 182 MESGESPSEKQAAAIQRLVAKSVPEMEMENVAVFDGNGIEVSVNKDGSSASGSNATEEIA 241

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
           Q I+ +I   +   L +F G +N R +   ++NM+        Y    K++   +    +
Sbjct: 242 QLIEMQISKKVINVLGSFYGAENIRVSARGKVNMEKVIRESTTYTTPEKIDEKDKTGIVS 301

Query: 295 QRSETSQ------PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
             S T          + V   +      +       +   +  +    +Y +N       
Sbjct: 302 SESTTKDTVNGGGAGTGVAGSETNADTPEYNAGTDNNASGSASESATRDYLVNQVKEQGE 361

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-RGDTIT 407
            D   LE L+++V +N      +             + E+  +V  ATGI +  R + IT
Sbjct: 362 LDTGVLEDLTVSVAINGKNAGNIS------------MNELRDLVGNATGIAAADRLEKIT 409

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           I +  F E           + +  +  +                           +  + 
Sbjct: 410 IVNAPFYEENADKDTKEVSNILKNIKDNL-------------------------PVIAVA 444

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
                 +   +++                +++ +    ++I          + +  S++ 
Sbjct: 445 AVIAVVIIILAVILIRRRRKRRMEEEEELEDLLIPDVTEEIRKPE---ILNLKNEKSREL 501

Query: 528 DLRLLHMIEINEERFAKILRKWARSEIED 556
              +    + N E  A+++R W     +D
Sbjct: 502 RENVRDFADENPEISAQMIRNWLNGGEQD 530


>gi|290894011|ref|ZP_06556986.1| flagellar M-ring protein FliF [Listeria monocytogenes FSL J2-071]
 gi|290556457|gb|EFD89996.1| flagellar M-ring protein FliF [Listeria monocytogenes FSL J2-071]
          Length = 550

 Score =  219 bits (559), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 99/540 (18%), Positives = 214/540 (39%), Gaps = 48/540 (8%)

Query: 42  FVNSPHYDN-LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           ++N+P  +  LY  L  +   +++  L++  +D+ +  +G+ I V   +    R   A  
Sbjct: 33  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA----LEGEIARTIQSISGIVAARVHI 156
           G+P +  +    L    +S G +   +++         LE EI ++  +   + +A V +
Sbjct: 92  GIPYTGQDGNDILL--NSSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TVDSASVQL 147

Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDST 213
            +P+  S F +   + TA+V ++  N      +    I+  V+AAVPN+   DV ++D+ 
Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207

Query: 214 GKLLTANEM----ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
             +++  +       +     + I  AI   ++ +I   L++   +DNFR      +N D
Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVTVNFD 267

Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
             +     Y  D KV  + +  S D  +   +  ES      ++P+ +++      +   
Sbjct: 268 EIKQNTEHYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTY-T 326

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           ++K  E +NYE+++           L + ++ V V++  L +     A+  K     A +
Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQNALNKNGVDMAEFTKAIGVSAGL 385

Query: 389 N-KIVSAATGINS------------RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435
              + +   G +             + GD +TI  + FL+N                   
Sbjct: 386 TPNMTTEEAGADGETAAAPTFEGTFQNGD-VTIMPIQFLDNATPAEKDTTEKAAPASKAW 444

Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495
              +  +L+F +    +    +  L+R   +++A + E         P   + +     P
Sbjct: 445 IWWLAGSLLFAIIAAGIIAYIIF-LKRKEQLEEALEPEEKD----YIPAEEAIINPEEHP 499

Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + N   D+ +         L++R      +    +L  M + +  R A +++KW     E
Sbjct: 500 DFNFQTDAFD----LSEPELKAR-----KESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 550


>gi|253573518|ref|ZP_04850861.1| flagellar M-ring protein FliF [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251847046|gb|EES75051.1| flagellar M-ring protein FliF [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 527

 Score =  219 bits (559), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 94/574 (16%), Positives = 209/574 (36%), Gaps = 79/574 (13%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
            D+ L ++   +   +T   +L S     ++  +      +   Y+  +  L+ +D   I
Sbjct: 9   RDRFLGYWNQFSKKQKT---LLVSTATFILLAIILLTIQFSKTEYEVAFTGLDSTDAAGI 65

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    I +++  +G++ISVPS    + ++ + +QG+  + S       +  +  G+T
Sbjct: 66  INYLESGGISYKLGPDGTTISVPSKDAARVKVDVGSQGIVQNGSIGLEAFNESSSLIGMT 125

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK--IGARPTASVMIRAIN 181
                +    A+ GE+ + ++ + G+  A+V I +P    F       + TAS+++    
Sbjct: 126 DNEFNVKYKNAINGEVEQLLKRMQGVNDAKVLINLPAENVFASPDEQEKATASIVLTFKP 185

Query: 182 PSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME------RNILGKSLSI 233
                    +   +LV  +VPNL + ++++  S   +L  +          + + +++++
Sbjct: 186 GYRPNQEAIDGYFNLVKTSVPNLPVENISLSSSDDTILLPSGQGGTTGSLTSAVQENMAL 245

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-DSKVERSIRLS- 291
            +  + ++  ++ + L+   G D     V ++LN D    ++ +  P D++  + I +S 
Sbjct: 246 QKKFESDVRQSVKQFLSRLTGPDKIEVLVASKLNFDQVSQKDNLVTPVDTENMKGIEISA 305

Query: 292 KDAQRSETSQPESAVTVEQ-NMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
           +  Q+S T        V       V +          ++++     NYE+N  +      
Sbjct: 306 QKVQKSYTGSANPTSGVPGTGEEDVVNYPSSETNGGSSSEESSSTINYEVNRITKDIIAS 365

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG----------INS 400
            Y ++ L+I V V      E L  +            I  I+    G           + 
Sbjct: 366 PYVIKDLTINVAVEPPEGQETLDENTRSA--------IENILKNIVGSYLADSGTTYTDE 417

Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460
                +++ S  F  +      TVQ + + + S     V  A +  +  L +        
Sbjct: 418 ELQRKVSVLSQPFHSD------TVQKAGLSLSSPLVWGVGGAALLALAGLGIVLFRRR-- 469

Query: 461 RRLHNIDDAKKGEVGGKSILSP-PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519
                    K+ +   + I  P  P   ++    + N+N                     
Sbjct: 470 ---------KQAQEEEEEIALPLTPEFPSINLDTVTNEN--------------------- 499

Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                 Q   +L  + +   + F  +LR W   E
Sbjct: 500 ------QVRKQLETLAKKKPDEFVNLLRTWLADE 527


>gi|217965189|ref|YP_002350867.1| flagellar M-ring protein FliF [Listeria monocytogenes HCC23]
 gi|217334459|gb|ACK40253.1| flagellar M-ring protein FliF [Listeria monocytogenes HCC23]
 gi|307570252|emb|CAR83431.1| flagellar M-ring protein [Listeria monocytogenes L99]
          Length = 550

 Score =  219 bits (559), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 99/540 (18%), Positives = 214/540 (39%), Gaps = 48/540 (8%)

Query: 42  FVNSPHYDN-LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           ++N+P  +  LY  L  +   +++  L++  +D+ +  +G+ I V   +    R   A  
Sbjct: 33  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA----LEGEIARTIQSISGIVAARVHI 156
           G+P +  +    L    +S G +   +++         LE EI ++  +   + +A V +
Sbjct: 92  GIPYTGQDGNDILL--NSSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TVDSASVQL 147

Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDST 213
            +P+  S F +   + TA+V ++  N      +    I+  V+AAVPN+   DV ++D+ 
Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207

Query: 214 GKLLTANEM----ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
             +++  +       +     + I  AI   ++ +I   L++   +DNFR      +N D
Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVTVNFD 267

Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
             +     Y  D KV  + +  S D  +   +  ES      ++P+ +++      +   
Sbjct: 268 EIKQNTEHYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTY-T 326

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           ++K  E +NYE+++           L + ++ V V++  L +     A+  K     A +
Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQNALNKNGVDMAEFTKAIGVSAGL 385

Query: 389 N-KIVSAATGINS------------RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435
              + +   G +             + GD +TI  + FL+N                   
Sbjct: 386 TPNMTTEEAGADGEVAAAPTFEGTFQNGD-VTIMPIQFLDNATPAEKDTTEKAAPASKAW 444

Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495
              +  +L+F +    +    +  L+R   +++A + E         P   + +     P
Sbjct: 445 IWWLAGSLLFAIIAAGIIAYIIF-LKRKEQLEEALEPEEKD----YIPAEEAIINPEEHP 499

Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + N   D+ +         L++R      +    +L  M + +  R A +++KW     E
Sbjct: 500 DFNFQTDAFD----LSEPELKAR-----KESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 550


>gi|229017034|ref|ZP_04173954.1| Flagellar M-ring protein fliF [Bacillus cereus AH1273]
 gi|229023215|ref|ZP_04179726.1| Flagellar M-ring protein fliF [Bacillus cereus AH1272]
 gi|228738140|gb|EEL88625.1| Flagellar M-ring protein fliF [Bacillus cereus AH1272]
 gi|228744305|gb|EEL94387.1| Flagellar M-ring protein fliF [Bacillus cereus AH1273]
          Length = 525

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 89/568 (15%), Positives = 205/568 (36%), Gaps = 66/568 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +++L   F+   SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKLKNVFQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  LS+  +D++++ +G SI V  +     R  +   GLP +S +    L +  +S G +
Sbjct: 56  TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112

Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178
              +++ +     + LE +I R     + I  A V I +P+    F +  A+ TA++ + 
Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRN---FAVIETANVQITLPEKETIFDEEKAKGTAAITVG 169

Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSL 231
                         I+ +++AAVP +   +V+V+DS   +++    E      +   K +
Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGAGEAHSSSSSSYEKEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            +   I+ +++ +I+  L      + ++      +N D    +   Y  D  V RS +  
Sbjct: 230 EMQHQIEGKLKRDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288

Query: 292 KDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           +++  ++        + +T    +P+         + + +     +  NYEI+       
Sbjct: 289 EESSTAQEGADMKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIK 348

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------R 402
               +L + ++ V V+   L           K    +    + +  A G+ +        
Sbjct: 349 KHP-ELTKTNVVVWVDNDTLV----------KRRIDMETFKEAIGTAAGLQADPNGNFTN 397

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           G  + + ++ F + +       + S M+              +L+G +            
Sbjct: 398 G-QVNVVTVQFDQPKEDKPKKPEESGMNW-------------WLIGGITGG--------L 435

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
           L             K           +    +   + ++    ++        +      
Sbjct: 436 LALALLIWFLLARSKKKKEEEEYEEYLAEEEVAVSSESIMEIPEEKIVPEPKREPEPVEP 495

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWA 550
                D ++      + E  AK+++KW 
Sbjct: 496 TEPTLDDQVQEATREHVEGTAKVIKKWL 523


>gi|302387796|ref|YP_003823618.1| flagellar M-ring protein FliF [Clostridium saccharolyticum WM1]
 gi|302198424|gb|ADL05995.1| flagellar M-ring protein FliF [Clostridium saccharolyticum WM1]
          Length = 534

 Score =  217 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 95/563 (16%), Positives = 193/563 (34%), Gaps = 53/563 (9%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           ++ +  F    +   +  I+     + V     + A      P Y+ ++  +   +  +I
Sbjct: 1   MENIKGFLSKFSDKAKKIIIAAVVGVAVVAGAVIMALSMREKP-YEVMFTSVGNEEAKQI 59

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L E  +D++  +    I VP++ +   +  L ++G P S     Y++F    +   T
Sbjct: 60  IGKLQEEKVDYQYLN--GDILVPAAQMDVTKARLVSEGYPKSGFT--YDVFKNNVNLMTT 115

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR---KIGARPTASVMIRAI 180
              ++  ++  LE  I  TIQ   G+  A V I + +   +          +A  ++   
Sbjct: 116 DSDRQTFKLYDLETRIGSTIQLFDGVKEAYVTIALGETSKYALSEDDAQEASAQAVVVMK 175

Query: 181 NPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQA 236
           +      + A++I+ L++ ++P + + +V+V D  GK ++ +  E +I     +  I + 
Sbjct: 176 DGGSPTEEQAKSIQLLISRSIPGMVISNVSVFDGNGKEVSTDSGEEDINSGKTAEEISKL 235

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD-------PDSKVERSIR 289
           I+ +I   +   L    G  N R +V   +NMD       VY+        D     S  
Sbjct: 236 IEDQIAAKVMNVLGPVYGNGNVRVSVKGTVNMDKLIRESTVYNVPEKIDENDKTGLTSEE 295

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
                              E N                          Y +N        
Sbjct: 296 SIYREYSGNGQTASGVAGSEANADIPQYNAGGAAGDNSAYGSSSLNRKYLLNQIKEQGQI 355

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI-NSRRGDTITI 408
           +   LE L+++VVVN              G     + +I  +   A GI  + R + IT 
Sbjct: 356 NPGSLENLTVSVVVNG------------NGFGTMTIDDIRNLAGNAAGIAQADRAEKITA 403

Query: 409 TSMDFLENQLFNSGTVQVSF-MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
            +  F    +       V    + +  +   +I AL  +   LL+  L +   R+   + 
Sbjct: 404 VAAPFYTIDVPKQPDEPVETGANGILVNQWILIAALAGVFLLLLIIILVVRHRRKKKALM 463

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
           +  +     +  +   P  +       P++   +    +D  +  R              
Sbjct: 464 ENMEDLEDSQEDVPIIPEFT-----KEPDEEREILVPEEDRGAELRES------------ 506

Query: 528 DLRLLHMIEINEERFAKILRKWA 550
              +    E N E  A++L+ W 
Sbjct: 507 ---VREFAEQNPEISAQLLKTWL 526


>gi|46906964|ref|YP_013353.1| flagellar MS-ring protein [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|46880230|gb|AAT03530.1| flagellar M-ring protein FliF [Listeria monocytogenes serotype 4b
           str. F2365]
          Length = 550

 Score =  217 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 100/550 (18%), Positives = 213/550 (38%), Gaps = 68/550 (12%)

Query: 42  FVNSPHYDN-LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           ++N+P  +  LY  L  +   +++  L++  +D+ +  +G+ I V   +    R   A  
Sbjct: 33  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA----LEGEIARTIQSISGIVAARVHI 156
           G+P +  +    L    +S G +   +++         LE EI ++  +   I +A V +
Sbjct: 92  GIPYTGQDGNDILL--NSSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TIDSASVQL 147

Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDST 213
            +P+  S F +   + TA+V ++  N      +    I+  V+AAVPN+   DV ++D+ 
Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207

Query: 214 GKLLTANEM----ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
             +++  +       +     + I  AI   ++ +I   L++   +DNFR      +N D
Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVSVNFD 267

Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
             +     Y  D KV  + +  S D  +   +  ES      ++P+ +++      +   
Sbjct: 268 EIKQNTEHYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTY-T 326

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           ++K  E +NYE+++           L + ++ V V++  L +              +AE 
Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQNALNKNGV----------DMAEF 375

Query: 389 NKIVSAATGINS-----------------------RRGDTITITSMDFLENQLFNSGTVQ 425
            K +  + G+                         + GD +TI  + FL+N         
Sbjct: 376 TKAIGVSAGLTPNMTTEEAGADGEAAAAPTFEGTFQNGD-VTIMPIQFLDNPTPAEEDTT 434

Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485
                        +  +L+F +    +    +  L+R   +++A + E         P  
Sbjct: 435 EKAAPASKAWIWWLAGSLLFAIIAAGIIAYIIF-LKRKEQLEEALEPEEKD----YIPAE 489

Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545
            + +     P+ N   D+ +         L++R      +    +L  M + +  R A +
Sbjct: 490 EAIINPEEHPDFNFQTDAFD----LSEPELKAR-----KESLKNKLGEMAKEDPGRAAAV 540

Query: 546 LRKWARSEIE 555
           ++KW     E
Sbjct: 541 IQKWLNERQE 550


>gi|226223344|ref|YP_002757451.1| flagellar basal-body M-ring protein FliF [Listeria monocytogenes
           Clip81459]
 gi|225875806|emb|CAS04509.1| Putative flagellar basal-body M-ring protein FliF [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
          Length = 550

 Score =  217 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 100/550 (18%), Positives = 213/550 (38%), Gaps = 68/550 (12%)

Query: 42  FVNSPHYDN-LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           ++N+P  +  LY  L  +   +++  L++  +D+ +  +G+ I V   +    R   A  
Sbjct: 33  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA----LEGEIARTIQSISGIVAARVHI 156
           G+P +  +    L    +S G +   +++         LE EI ++  +   I +A V +
Sbjct: 92  GIPYTGQDGNDILL--NSSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TIDSASVQL 147

Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDST 213
            +P+  S F +   + TA+V ++  N      +    I+  V+AAVPN+   DV ++D+ 
Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207

Query: 214 GKLLTANEM----ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
             +++  +       +     + I  AI   ++ +I   L++   +DNFR      +N D
Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVSVNFD 267

Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
             +     Y  D KV  + +  S D  +   +  ES      ++P+ +++      +   
Sbjct: 268 EIKQNTEHYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTY-T 326

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           ++K  E +NYE+++           L + ++ V V++  L +              +AE 
Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQNALNKNGV----------DMAEF 375

Query: 389 NKIVSAATGINS-----------------------RRGDTITITSMDFLENQLFNSGTVQ 425
            K +  + G+                         + GD +TI  + FL+N         
Sbjct: 376 TKAIGVSAGLTPNMTTEEAGADGEAAAAPTFEGTFQNGD-VTIMPIQFLDNATPAEEDTT 434

Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485
                        +  +L+F +    +    +  L+R   +++A + E         P  
Sbjct: 435 EKAAPASKAWIWWLAGSLLFAIIAAGIIAYIIF-LKRKEQLEEALEPEEKD----YIPAE 489

Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545
            + +     P+ N   D+ +         L++R      +    +L  M + +  R A +
Sbjct: 490 EAIINPEEHPDFNFQTDAFD----LSEPELKAR-----KESLKNKLGEMAKEDPGRAAAV 540

Query: 546 LRKWARSEIE 555
           ++KW     E
Sbjct: 541 IQKWLNERQE 550


>gi|47091676|ref|ZP_00229472.1| flagellar M-ring protein FliF [Listeria monocytogenes str. 4b
           H7858]
 gi|254824007|ref|ZP_05229008.1| flagellar M-ring protein FliF [Listeria monocytogenes FSL J1-194]
 gi|254932007|ref|ZP_05265366.1| flagellar M-ring protein FliF [Listeria monocytogenes HPB2262]
 gi|255521223|ref|ZP_05388460.1| flagellar MS-ring protein [Listeria monocytogenes FSL J1-175]
 gi|300764526|ref|ZP_07074519.1| flagellar M-ring protein FliF [Listeria monocytogenes FSL N1-017]
 gi|47019995|gb|EAL10732.1| flagellar M-ring protein FliF [Listeria monocytogenes str. 4b
           H7858]
 gi|293583558|gb|EFF95590.1| flagellar M-ring protein FliF [Listeria monocytogenes HPB2262]
 gi|293593234|gb|EFG00995.1| flagellar M-ring protein FliF [Listeria monocytogenes FSL J1-194]
 gi|300514880|gb|EFK41934.1| flagellar M-ring protein FliF [Listeria monocytogenes FSL N1-017]
 gi|328475674|gb|EGF46423.1| flagellar MS-ring protein [Listeria monocytogenes 220]
 gi|332311137|gb|EGJ24232.1| Flagellar M-ring protein FliF [Listeria monocytogenes str. Scott A]
          Length = 550

 Score =  217 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 100/550 (18%), Positives = 213/550 (38%), Gaps = 68/550 (12%)

Query: 42  FVNSPHYDN-LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           ++N+P  +  LY  L  +   +++  L++  +D+ +  +G+ I V   +    R   A  
Sbjct: 33  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA----LEGEIARTIQSISGIVAARVHI 156
           G+P +  +    L    +S G +   +++         LE EI ++  +   I +A V +
Sbjct: 92  GIPYTGQDGNDILL--NSSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TIDSASVQL 147

Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDST 213
            +P+  S F +   + TA+V ++  N      +    I+  V+AAVPN+   DV ++D+ 
Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207

Query: 214 GKLLTANEM----ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
             +++  +       +     + I  AI   ++ +I   L++   +DNFR      +N D
Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVSVNFD 267

Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
             +     Y  D KV  + +  S D  +   +  ES      ++P+ +++      +   
Sbjct: 268 EIKQNTEHYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTY-T 326

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           ++K  E +NYE+++           L + ++ V V++  L +              +AE 
Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQNALNKNGV----------DMAEF 375

Query: 389 NKIVSAATGINS-----------------------RRGDTITITSMDFLENQLFNSGTVQ 425
            K +  + G+                         + GD +TI  + FL+N         
Sbjct: 376 TKAIGVSAGLTPNMTTEEAGADGEAAAAPTFEGTFQNGD-VTIMPIQFLDNATPAEKDTT 434

Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485
                        +  +L+F +    +    +  L+R   +++A + E         P  
Sbjct: 435 EKAAPASKAWIWWLAGSLLFAIIAAGIIAYIIF-LKRKEQLEEALEPEEKD----YIPAE 489

Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545
            + +     P+ N   D+ +         L++R      +    +L  M + +  R A +
Sbjct: 490 EAIINPEEHPDFNFQTDAFD----LSEPELKAR-----KESLKNKLGEMAKEDPGRAAAV 540

Query: 546 LRKWARSEIE 555
           ++KW     E
Sbjct: 541 IQKWLNERQE 550


>gi|116872102|ref|YP_848883.1| flagellar MS-ring protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116740980|emb|CAK20100.1| flagellar M-ring protein FliF [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 550

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 99/538 (18%), Positives = 208/538 (38%), Gaps = 44/538 (8%)

Query: 42  FVNSPHYDN-LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           ++N+P  +  LY  L  +   +++  L++  +D+ +  +G+ I V   +    R   A  
Sbjct: 33  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISG--IVAARVHIVM 158
           G+P +  +    L    +S G +   +++      +  + + I    G  + +A V + +
Sbjct: 92  GIPYTGQDGNDILL--NSSLGASEEDKKMQEKVGTKVNLEKEIVQSYGITVDSASVQLTL 149

Query: 159 PDMGS-FRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
           P+  S F +   + TA+V ++  N      +    I+  V+AAVPN+   DV ++D+   
Sbjct: 150 PESSSIFEEASQKGTAAVTLKTKNNQTLTKEQVLGIQRTVSAAVPNVASEDVAIIDTKNG 209

Query: 216 LLT----ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ 271
           +++    ANE   +     + I  AI   ++ +I   L++   +DNFR      +N D  
Sbjct: 210 VISEADTANEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVAVNFDEI 269

Query: 272 QIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD 330
           +     Y  D KV  + +  S D  +  T+  ES      ++P+ ++       +   ++
Sbjct: 270 KQNTERYPNDGKVRSNQKDTSTDTSKGSTNTTESGTASNADVPNYTEENGGDQNTY-TSE 328

Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSAD--------QGKID 382
           K  E +NYE+++           L + ++ V V++  L +     A+         G   
Sbjct: 329 KSSETTNYELDSTIQEIEKHP-SLAKTNVVVWVDQQTLNKNGVDMAEFTKAIGVSAGLTP 387

Query: 383 SYLAEINKIVSAATGINS-----RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437
           +   E       AT   +     + GD +TI  + FL+NQ         +          
Sbjct: 388 NMTTEEAGAGGEATATPTFEGTFQNGD-VTIMPIQFLDNQTPVEKDPAKTTEPASKAWIW 446

Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497
            ++ +L+F +    +    +   R+    +  +             P   A+     P +
Sbjct: 447 WLVGSLLFAIIAAGIIAYIIFLKRKEQLEEALE------AEEKDFIPAEEAIID---PEE 497

Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           +                L++R      +    +L  M + +  R A +++KW     E
Sbjct: 498 HPDFHFQTNAFDLSEPELKAR-----KESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 550


>gi|313610108|gb|EFR85433.1| flagellar M-ring protein FliF [Listeria monocytogenes FSL F2-208]
          Length = 550

 Score =  217 bits (552), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 100/550 (18%), Positives = 213/550 (38%), Gaps = 68/550 (12%)

Query: 42  FVNSPHYDN-LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           ++N+P  +  LY  L  +   +++  L++  +D+ +  +G+ I V   +    R   A  
Sbjct: 33  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA----LEGEIARTIQSISGIVAARVHI 156
           G+P +  +    L    +S G +   +++         LE EI ++  +   I +A V +
Sbjct: 92  GIPYTGQDGNDILL--NSSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TIDSASVQL 147

Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDST 213
            +P+  S F +   + TA+V ++  N      +    I+  V+AAVPN+   DV ++D+ 
Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207

Query: 214 GKLLTANEM----ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
             +++  +       +     + I  AI   ++ +I   L++   +DNFR      +N D
Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVTVNFD 267

Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
             +     Y  D KV  + +  S D  +   +  ES      ++P+ +++      +   
Sbjct: 268 EIKQNTEHYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTY-T 326

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           ++K  E +NYE+++           L + ++ V V++  L +              +AE 
Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQNALNKNGV----------DMAEF 375

Query: 389 NKIVSAATGINS-----------------------RRGDTITITSMDFLENQLFNSGTVQ 425
            K +  + G+                         + GD +TI  + FL+N         
Sbjct: 376 TKAIGVSAGLTPNMTTEEAGADGEAAAAPTFEGTFQNGD-VTIMPIQFLDNATPAEKDTT 434

Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485
                        +  +L+F +    +    +  L+R   +++A + E         P  
Sbjct: 435 EKAAPASKAWIWWLAGSLLFAIIAAGIIAYIIF-LKRKEQLEEALEPEEKD----YIPAE 489

Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545
            + +     P+ N   D+ +         L++R      +    +L  M + +  R A +
Sbjct: 490 EAIINPEEHPDFNFQTDAFD----LTEPELKAR-----KESLKNKLGEMAKEDPGRAAAV 540

Query: 546 LRKWARSEIE 555
           ++KW     E
Sbjct: 541 IQKWLNERQE 550


>gi|328467278|gb|EGF38358.1| flagellar MS-ring protein [Listeria monocytogenes 1816]
          Length = 544

 Score =  217 bits (552), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 100/550 (18%), Positives = 213/550 (38%), Gaps = 68/550 (12%)

Query: 42  FVNSPHYDN-LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           ++N+P  +  LY  L  +   +++  L++  +D+ +  +G+ I V   +    R   A  
Sbjct: 27  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 85

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA----LEGEIARTIQSISGIVAARVHI 156
           G+P +  +    L    +S G +   +++         LE EI ++  +   I +A V +
Sbjct: 86  GIPYTGQDGNDILL--NSSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TIDSASVQL 141

Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDST 213
            +P+  S F +   + TA+V ++  N      +    I+  V+AAVPN+   DV ++D+ 
Sbjct: 142 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 201

Query: 214 GKLLTANEM----ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
             +++  +       +     + I  AI   ++ +I   L++   +DNFR      +N D
Sbjct: 202 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVSVNFD 261

Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
             +     Y  D KV  + +  S D  +   +  ES      ++P+ +++      +   
Sbjct: 262 EIKQNTEHYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTY-T 320

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           ++K  E +NYE+++           L + ++ V V++  L +              +AE 
Sbjct: 321 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQNALNKNGV----------DMAEF 369

Query: 389 NKIVSAATGINS-----------------------RRGDTITITSMDFLENQLFNSGTVQ 425
            K +  + G+                         + GD +TI  + FL+N         
Sbjct: 370 TKAIGVSAGLTPNMTTEEAGADGEAAAAPTFEGTFQNGD-VTIMPIQFLDNATPAEKDTT 428

Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485
                        +  +L+F +    +    +  L+R   +++A + E         P  
Sbjct: 429 EKAAPASKAWIWWLAGSLLFAIIAAGIIAYIIF-LKRKEQLEEALEPEEKD----YIPAE 483

Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545
            + +     P+ N   D+ +         L++R      +    +L  M + +  R A +
Sbjct: 484 EAIINPEEHPDFNFQTDAFD----LSEPELKAR-----KESLKNKLGEMAKEDPGRAAAV 534

Query: 546 LRKWARSEIE 555
           ++KW     E
Sbjct: 535 IQKWLNERQE 544


>gi|254993621|ref|ZP_05275811.1| flagellar MS-ring protein [Listeria monocytogenes FSL J2-064]
          Length = 544

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 99/544 (18%), Positives = 212/544 (38%), Gaps = 68/544 (12%)

Query: 42  FVNSPHYDN-LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           ++N+P  +  LY  L  +   +++  L++  +D+ +  +G+ I V   +    R   A  
Sbjct: 33  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA----LEGEIARTIQSISGIVAARVHI 156
           G+P +  +    L    +S G +   +++         LE EI ++  +   I +A V +
Sbjct: 92  GIPYTGQDGNDILL--NSSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TIDSASVQL 147

Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDST 213
            +P+  S F +   + TA+V ++  N      +    I+  V+AAVPN+   DV ++D+ 
Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207

Query: 214 GKLLTANEM----ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
             +++  +       +     + I  AI   ++ +I   L++   +DNFR      +N D
Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVSVNFD 267

Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
             +     Y  D KV  + +  S D  +   +  ES      ++P+ +++      +   
Sbjct: 268 EIKQNTEHYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTY-T 326

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           ++K  E +NYE+++           L + ++ V V++  L +              +AE 
Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQNALNKNGV----------DMAEF 375

Query: 389 NKIVSAATGINS-----------------------RRGDTITITSMDFLENQLFNSGTVQ 425
            K +  + G+                         + GD +TI  + FL+N         
Sbjct: 376 TKAIGVSAGLTPNMTTEEAGADGEAAAAPTFEGTFQNGD-VTIMPIQFLDNATPAEKDTT 434

Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485
                        +  +L+F +    +    +  L+R   +++A + E         P  
Sbjct: 435 EKAAPASKAWIWWLAGSLLFAIIAAGIIAYIIF-LKRKEQLEEALEPEEKD----YIPAE 489

Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545
            + +     P+ N   D+ +         L++R      +    +L  M + +  R A +
Sbjct: 490 EAIINPEEHPDFNFQTDAFD----LSEPELKAR-----KESLKNKLGEMAKEDPGRAAAV 540

Query: 546 LRKW 549
           ++KW
Sbjct: 541 IQKW 544


>gi|255594469|ref|XP_002536098.1| Flagellar M-ring protein, putative [Ricinus communis]
 gi|223520885|gb|EEF26286.1| Flagellar M-ring protein, putative [Ricinus communis]
          Length = 263

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 66/264 (25%), Positives = 129/264 (48%), Gaps = 7/264 (2%)

Query: 26  ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISV 85
             V+ + I   +    + +   Y  ++   E    + +   L   ++ +RI  +   + V
Sbjct: 1   MLVLAIGITAAVMLYMWNDQAGYKPVFGAHEKVAASDMMSVLDAEHVPYRIHPDSGQVMV 60

Query: 86  PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145
           P+  +GK R+ LAA+G+ ++   +G EL DK +  G++ F+Q++   R LEGE+A++I +
Sbjct: 61  PTGQLGKVRMLLAAKGV-TAQLPAGLELMDKNDPLGVSQFVQDVRFRRGLEGELAQSILT 119

Query: 146 ISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNL 202
           +  I +ARVH+ +    SF    G + +ASV++          +   AI ++V+ +V  L
Sbjct: 120 LDAIASARVHLAIAKSSSFVANDGDKSSASVVVAVKPGRTLSNEQIAAIVNMVSGSVAGL 179

Query: 203 DMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
               V+++D  G  L++        +   +  +  +  Q E+  N+   L   LG DNF+
Sbjct: 180 APARVSLVDQNGNYLSSRVDLTEGFDGAAQGDAAAKRYQDEVRTNVAGLLGPVLGADNFK 239

Query: 260 SAVVAELNMDTQQIREIVYDPDSK 283
            +V A+++ D  +  +  Y  D K
Sbjct: 240 VSVTADVDNDKVEETQEKYGADPK 263


>gi|315281378|ref|ZP_07870015.1| flagellar M-ring protein FliF [Listeria marthii FSL S4-120]
 gi|313614975|gb|EFR88482.1| flagellar M-ring protein FliF [Listeria marthii FSL S4-120]
          Length = 550

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 100/550 (18%), Positives = 211/550 (38%), Gaps = 68/550 (12%)

Query: 42  FVNSPHYDN-LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           ++N+P  +  LY  L  +   +++  L++  +D+ +  +G+ I V   +    R   A  
Sbjct: 33  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA----LEGEIARTIQSISGIVAARVHI 156
           G+P +  +    L    +S G +   +++         LE EI ++  +   I +A V +
Sbjct: 92  GIPYTGQDGNDILL--NSSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TIDSASVQL 147

Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDST 213
            +P+  S F +   + TA+V ++  N      +    I+  V+AAVPN+   DV ++D+ 
Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207

Query: 214 GKLLTANEM----ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
             +++  +       +     + I  AI   ++ +I   L++   +DNFR      +N D
Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVTVNFD 267

Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
             +     Y  D KV  + +  S D  +  T+  ES      ++P+ +++      +   
Sbjct: 268 EIKQNTEHYPSDGKVRSNQKDTSTDTSKGSTNTTESGTASNADVPNYTEQNGDDTNTY-T 326

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           ++K  E +NYE+++           L + ++ V V++  L +              +AE 
Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQNALNKNGV----------DMAEF 375

Query: 389 NKIVSAATGINS-----------------------RRGDTITITSMDFLENQLFNSGTVQ 425
            K +  + G+                         + GD +TI  + FL+NQ        
Sbjct: 376 TKAIGVSAGLTPNMRTEEAGADGEAAAAPTFEGTFQNGD-VTIMPIQFLDNQTPVEKDTT 434

Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485
                        +  +L+F +    +    +   R+    +  +  E         P  
Sbjct: 435 EKAAPASKAWIWWLAGSLLFAIIAAGIIAYIIFLKRKEQLEEALEAEEKD-----YIPAE 489

Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545
            + +     P+ N   D+ +         L++R      +    +L  M + +  R A +
Sbjct: 490 EAIINPEEHPDFNFQTDAFD----LSEPELKAR-----KESLKNKLGEMAKEDPGRAAAV 540

Query: 546 LRKWARSEIE 555
           ++KW     E
Sbjct: 541 IQKWLNERQE 550


>gi|119503663|ref|ZP_01625746.1| flagellar M-ring protein [marine gamma proteobacterium HTCC2080]
 gi|119460725|gb|EAW41817.1| flagellar M-ring protein [marine gamma proteobacterium HTCC2080]
          Length = 243

 Score =  214 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 66/240 (27%), Positives = 113/240 (47%), Gaps = 6/240 (2%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           + +L       +   TR + L   +   + L +    +   P +  LY  +  +D     
Sbjct: 4   NPILNRVSGFAAQPVTRQMALLIGMAASVALGVGVIQWAMKPDFQPLYGAMSPADNATAV 63

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L    I + ++     +SVPS  + +AR+ LA++G P      G+E   +    GL+S
Sbjct: 64  SLLQANGIPYTMAGGSGLLSVPSDQIPQARMALASEGFPRGGG-VGFESLYQEQEMGLSS 122

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI--NP 182
           FM++    RA+E E+ARTI ++  +  ARVH+      +F + G  P+ASVM+       
Sbjct: 123 FMEQARYNRAVEAELARTISAMDSVKGARVHVAASKQSAFIRRGQEPSASVMVSLYPGRG 182

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQAIQH 239
              +    I HLVA+++P L    V+V+D  GKLL++ + E N  G   +   I Q ++ 
Sbjct: 183 LSERQLAGIVHLVASSIPELQASKVSVVDQAGKLLSSQDGEDNDFGYTSEQFRIAQQLED 242


>gi|320535381|ref|ZP_08035495.1| flagellar M-ring protein FliF [Treponema phagedenis F0421]
 gi|320147783|gb|EFW39285.1| flagellar M-ring protein FliF [Treponema phagedenis F0421]
          Length = 571

 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 107/589 (18%), Positives = 217/589 (36%), Gaps = 73/589 (12%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLY-VKLEVSDVNR-I 63
           +L + +   + + +   L+LA VIL  I+       + ++P    L  V +        I
Sbjct: 15  KLKELWGKWSVVQK---LVLAGVILAAIIGMAVLFTWSSAPTTVPLIDVPISDEAAREKI 71

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGK-ARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
            + L+E NI   +S  G  ISVP     +  R  L  + L   + +  + +FD V  +  
Sbjct: 72  ILRLNEENISASVSATG-LISVPDEKTARRMRSILIREDLIPKNVDP-WAIFD-VERWTR 128

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T F +++   RA+   +   I+++  +  A V I +P+   F+      TASV++     
Sbjct: 129 TDFERKVDVRRAINKMVTDHIKALDDVDDANVIINVPEDTLFKADQKPITASVVLFTKPG 188

Query: 183 SV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-----ILGKSLSI 233
           S      K  + I+ L+  AVP L   ++T+ DS  K+L   E  ++     ++ K   +
Sbjct: 189 SDIETDRKKIQGIQKLLKLAVPGLLDENITIADSNAKILNDFEGMKDMDRLTLIEKQQKM 248

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRS-AVVAELNMDTQQIREIVYDP------------ 280
           +  ++ + E+ I   L    G D  R   +  +++M  +  +   Y P            
Sbjct: 249 IAKLETQYEIKILTLLQKTYGKDRVRDLNIKIDMDMSEKTAQTTKYLPTEIRPDNPETPW 308

Query: 281 -DSKVERSIRLSKDA----QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ 335
            DS++  SI    +      +     PE    VE   P               +  K ++
Sbjct: 309 DDSEIVPSITAISETATTTWQGTGLTPEGPAGVEGQTPPAYKDMTNQLGMSNQSIVKRQE 368

Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS-----------ADQGKIDSY 384
               I+   I+       L R +++V ++     +   +                     
Sbjct: 369 ---AISKSEISEVISPV-LGRRTVSVNIDGEWRKKRDDKGNLVISEGRIEREYIPISPEE 424

Query: 385 LAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALV 444
           L E  + V  A G ++ R D+I++ ++ F     F +           +   A   N ++
Sbjct: 425 LQEATRAVQNAIGYDANRKDSISVLNIRFDRVAEFEAEDA--------AYFRAQQRNMII 476

Query: 445 FLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSS 504
            +        L +  L R+ + +  +   +  +  L    ++          +NI +  S
Sbjct: 477 LISLGGFAILLLIFILYRIISRELERLRRLREEDELRKAQMAREAALRAAEMNNIDVAMS 536

Query: 505 NQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
            ++        + R+    +      +++M   + E  A ++R W   E
Sbjct: 537 VEE--------RKRLELQEN------VINMAREHPEDVALLIRTWLMEE 571


>gi|47566129|ref|ZP_00237167.1| flagellar M-ring protein, putative [Bacillus cereus G9241]
 gi|47557046|gb|EAL15376.1| flagellar M-ring protein, putative [Bacillus cereus G9241]
          Length = 515

 Score =  212 bits (541), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 99/565 (17%), Positives = 217/565 (38%), Gaps = 71/565 (12%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +++L   F+   SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I
Sbjct: 1   MEKLKNVFQ---SLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEI 55

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  LS+  +D++++ +G SI V  +     R  +   GLP +S +    L +  +S G +
Sbjct: 56  TAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNSKSGEEILLE--SSLGSS 112

Query: 124 SFMQEITR----VRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIR 178
              +++ +     + LE +I R   +   +  A V I +P+    F +  A+ TA++ + 
Sbjct: 113 EQDKKMKQIVGTKKQLEQDIVRNFAT---VETANVQITLPEKETIFDEEKAKGTAAITVG 169

Query: 179 AINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSL 231
                         I+ +++AAVP +   +V+V+DS   +++    E      +   K +
Sbjct: 170 VKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            +   I+ +++ +I+  L      + ++      +N D    +   Y  D  V RS +  
Sbjct: 230 EMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQ 288

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           ++     TS  +     +Q     ++ +VP   +  N +  + ++ YEI+          
Sbjct: 289 EE-----TSTAQEGADTKQGAGITANGEVPNYGTNNNKNGNKIEN-YEIDKTVETIKKHP 342

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR------RGDT 405
            +L + ++ V V+   L           K    +    + +  A G+ +        G  
Sbjct: 343 -ELTKTNVVVWVDNDTLV----------KRRIDMTTFKEAIGTAAGLQADPNGNFTNG-Q 390

Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465
           + + ++ F + +       + S ++         I A +  +G  LV FL       L  
Sbjct: 391 VNVVTVQFDQPKEEKPKEPEESGINW---WLFGGIPAGLLAIGG-LVWFL-------LAR 439

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
               K+ E   + +      +S+ +   +P + I  +   +        L  ++      
Sbjct: 440 RKRKKEEEEYEEYLAEEEVAASSESIMEIPEEKIVPEPKPEPEEPKEPTLDEQVQDATK- 498

Query: 526 QSDLRLLHMIEINEERFAKILRKWA 550
                       + E  AK+++KW 
Sbjct: 499 -----------EHVEGTAKVIKKWL 512


>gi|91791422|ref|YP_561073.1| secretory protein YscJ/FliF [Shewanella denitrificans OS217]
 gi|91713424|gb|ABE53350.1| secretory protein YscJ/FliF [Shewanella denitrificans OS217]
          Length = 439

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 96/448 (21%), Positives = 192/448 (42%), Gaps = 52/448 (11%)

Query: 20  TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN 79
           T+ +      +  ++L +   ++V       L+  L  + +   +  L  + I +++   
Sbjct: 8   TKKMRFFIAGISLMLLTLITLWWVIQDSKQVLFSGLSQATLTEYTAKLEASGIGYQVE-- 65

Query: 80  GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEI 139
           G+SI V SS   +AR+ +A +    S++ +G+EL++  +  G T   Q    +RAL+GEI
Sbjct: 66  GTSIFVASSDSNQARV-VAMEDSIQSNNVTGFELYE-NSDLGATERAQHANYLRALQGEI 123

Query: 140 ARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEAIRHLVAA 197
            RT+   + I  ARVH+ +P    F        ASV +  ++    ++   EAI+ LV +
Sbjct: 124 ERTLTGFNYIKKARVHLTLPQKRLFMSQNQLTKASVTLFTVDHYQPRTIDIEAIKQLVVS 183

Query: 198 AVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDN 257
           AV +L +  V V+D  G+     E + ++   +L++ ++ +  +E  + + L A+    +
Sbjct: 184 AVEDLTIDQVVVIDGAGQ-WGVFEPQGDLSSPNLALRRSTESYLEQKVLQVLVAYFSASS 242

Query: 258 FRSAVVAELNMDTQQIREIVY---DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPH 314
             +AV  ELN DT +I E      D    +  S    ++   S+ ++P S          
Sbjct: 243 ISAAVAVELNTDTVKIHETKAIKGDGSQGLISSETKFEETHLSDDNKPGS---------- 292

Query: 315 VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR 374
                         T + E    Y     +  T     ++ RL+ AV +N     E+   
Sbjct: 293 -------------KTLRNEVT--YAHGALTQETEQAPGQILRLTAAVSINAEVAPELQ-- 335

Query: 375 SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSR 434
                      A+I++++    G +S+R D+I+++   F   ++       ++   ++ +
Sbjct: 336 -----------AQISELIKNTIGFDSQRDDSISVSF--FYLPKVEPLPVTPMAVEPVVVK 382

Query: 435 HFATVINA--LVFLVGTLLVTFLGLHAL 460
              +      L+  +GTL     G+  L
Sbjct: 383 TVESNTWWPFLLIGLGTLFSLSTGMFYL 410


>gi|227873553|ref|ZP_03991796.1| flagellar M-ring protein FliF [Oribacterium sinus F0268]
 gi|227840599|gb|EEJ50986.1| flagellar M-ring protein FliF [Oribacterium sinus F0268]
          Length = 557

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 103/573 (17%), Positives = 208/573 (36%), Gaps = 49/573 (8%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           + +L + +++ ++  +  + I+A + +V I + +          Y  L+  L   +  +I
Sbjct: 1   MQKLKEMWQNLSAKSKKLLGIIAGITVVVIAVAVFLLARGQKTEYQTLFSSLSQGEAQQI 60

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L E N+ +       ++ VPS  V   R  L ++G P S     Y+++   +    T
Sbjct: 61  VSLLQEQNVPYLYDGKSGALKVPSESVDTLRAQLLSKGYPKSGFA--YDMYIGNSGLMTT 118

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARP---TASVMIRAI 180
              ++   +  L+  +  TI+   G+  A+V I      ++      P   +ASV++   
Sbjct: 119 ESDKKQYTLYDLQDRLGATIRLFDGVRDAKVTIAEGTDQTYAIEDENPVQASASVVVTME 178

Query: 181 NPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ--- 235
                  K+AEAI++L+A +V  ++  +V+V D+      A +   +  G   S+     
Sbjct: 179 EGQSLSEKNAEAIKNLIARSVKGMNFTNVSVFDAGTMEEVAADAGDSASGSGTSMANLTT 238

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS-------- 287
            +++ I  NI + L    G +N   +V   LNM         Y    K E +        
Sbjct: 239 TVENNIANNIKRVLGKIYGGENLAVSVKGTLNMAKLIQENTQYTVPEKTEATDKRGLLSN 298

Query: 288 IRLSKDAQRSETSQPESAVTVEQNM-PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346
             ++ +   +           + N        +     + +N         +  N     
Sbjct: 299 EEVAGENAGNSGENAAGVAGADANADTPRYTTQNGTATTTDNYSNSSATREWLYNVLKEQ 358

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI-NSRRGDT 405
                  LE  S+A+V+N            D   I    +++  +V+ A GI      D 
Sbjct: 359 KEIAPGVLEDASVAIVIN-----------TDDNSIPE--SDLINLVADAAGIKRDEAADK 405

Query: 406 ITIT-SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
           ITI  S++    Q              L   F      L  L+G  +  FL +     L 
Sbjct: 406 ITILRSLNKTAVQQTTEEKKPAEEPKTLLNQFP-----LWALIGAAVSAFLLILI---LL 457

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNI-ALDSSNQDIFSHSRNLQSRINSYV 523
            +    + +   K +      ++A  +   P D I  ++  ++D  +    +   +    
Sbjct: 458 ILILRGRKKKKLKKLAQEEMENAAALSVEQPTDEITPVEEVDEDELTAEGKMAHGMKLKK 517

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIED 556
           S      +    + N +  AK+++ W R E ++
Sbjct: 518 S------IGEFTDQNPQVVAKLIQSWMREEEQN 544


>gi|330946240|gb|EGH47422.1| flagellar MS-ring protein [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 227

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 109/228 (47%), Gaps = 5/228 (2%)

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
           ARI LA  G+  S +N G+E+ DK    G + FM+     R LEGE+ARTI +++ +  A
Sbjct: 1   ARIQLAQAGVVQSDANIGFEILDKDQGLGTSQFMEATRYRRGLEGELARTISALNNVKGA 60

Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVL 210
           RVH+ +P    F +   +P+ASV++        +     AI +LVA +VP L    +TV+
Sbjct: 61  RVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEPSQVLAIINLVATSVPELSKSQITVV 120

Query: 211 DSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM 268
           D  G LL+  A   E  + GK     + ++  +   +   L   LG D +++ V A ++ 
Sbjct: 121 DQKGTLLSDQAENSELTMAGKQFDYSRRMEGMLTQRVQNILQPILGNDRYKAEVSAVVDF 180

Query: 269 DTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVS 316
              +     ++PD    RS +   + QRS +S          N P   
Sbjct: 181 SAVESTAESFNPDQPALRSEQSVNE-QRSSSSSSGGVPGALSNQPPGP 227


>gi|317133489|ref|YP_004092803.1| flagellar M-ring protein FliF [Ethanoligenens harbinense YUAN-3]
 gi|315471468|gb|ADU28072.1| flagellar M-ring protein FliF [Ethanoligenens harbinense YUAN-3]
          Length = 528

 Score =  209 bits (532), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 90/520 (17%), Positives = 180/520 (34%), Gaps = 43/520 (8%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
             +    Y+ +Y  L  ++  +I   L    I +++  +G+SI V  S+  +AR+ LA  
Sbjct: 43  MLLTQTQYELIYSGLSDAESGQIVADLQTRGIKYKL--DGNSIYVDKSVADQARMELAVD 100

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           G P ++ N  Y +++  N++ +T   ++   +  ++  +  TIQ+I G+  A V I   +
Sbjct: 101 GYPQTTLN--YSVYESGNNWAMTDKDKQQLALYQIQDRLQSTIQTIPGVKNAIVTITQGN 158

Query: 161 MGSFRKIGAR--PTASV--MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
             ++     +  PTASV   +        K    I ++V+ +V  L   +VTV DS G  
Sbjct: 159 DDTYVLESDKVSPTASVKLTLTPGTTLTQKQVTGIVNIVSHSVSGLSADNVTVADSDGNT 218

Query: 217 L-TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           L    +         L++   ++ EI   +   L    G  N + +  A L+  T     
Sbjct: 219 LNNTGDDLSGATSDQLALRVQVESEIRQKVLSVLGPVYGAANVQVSPAAILDFTTTTTNT 278

Query: 276 IVY---DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332
             Y   D       S+  S        +     V V    P                 ++
Sbjct: 279 TTYSGPDNGQGFPSSVSSSITVSGGTGTASGGTVGVNGAQPAYPTSGSQTSSLSGTVTQQ 338

Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV 392
              + Y  N            ++ L+I +++N          SA+Q        ++ + V
Sbjct: 339 NTNTTYLYNQVQQQVQDKGGSIKNLTIGIMLN----------SANQAIAGLDPTQVQQFV 388

Query: 393 SAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452
           + A G   +    + +  M F  +   +SG    +          T++         +++
Sbjct: 389 AYAVGTAPQ---NVNVQLMRFASSSAVSSGGKGSASGTSGLGSPTTLLTIAGIGAAAVVL 445

Query: 453 TFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS 512
             L L  L R      A + E   ++  +           +                   
Sbjct: 446 ILLLLFFLLRGRKRKKALQEEAEAQAEQAQAAQPVKPGPPMSAE---------------- 489

Query: 513 RNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
             L  +++         ++    +   E  A++LR W + 
Sbjct: 490 --LAQKLDEMPDNPVKKQIEDFTDSKPELVAQLLRNWLKD 527


>gi|225375317|ref|ZP_03752538.1| hypothetical protein ROSEINA2194_00942 [Roseburia inulinivorans DSM
           16841]
 gi|225212806|gb|EEG95160.1| hypothetical protein ROSEINA2194_00942 [Roseburia inulinivorans DSM
           16841]
          Length = 536

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 97/578 (16%), Positives = 207/578 (35%), Gaps = 74/578 (12%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            +LD++L+++K   +  +T ++ + +V+LV + +  A    V+ P    L      ++  
Sbjct: 9   KVLDRILEWWKKFNTKQKTLLISIVAVVLVALAILAAV---VSKPKMVTLVTCATTAESG 65

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           ++   L   NI + +S +G +  V       A I L    +P+S +    ++FD    F 
Sbjct: 66  QVKNILDSENISYELSADGLAFQVNEKDYANASIVLGTNDIPTSGTK-LSDVFD--GGFS 122

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG-SFRKIGARPTASVMIRAI 180
            T   +       LE   A  ++++S + AA V + +PD   +    G +   + ++   
Sbjct: 123 STEADKTKKYKLYLEEYYAEKLETLSNVDAAAVTLDLPDEDGTILSKGEQAYVTAILTLN 182

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQAI 237
                + A  +   +A  V N D  +V +LD++  +L + + + ++ G     LS+    
Sbjct: 183 GTMDDEQAAGLAKYLATNVGNDDTSNVLILDNSSNVLFSGQDDTSVTGNANNQLSLKTKA 242

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPDSKVERSIRLSKDAQR 296
           +++++  +   L      DN    +   +N D T +     Y PD +    +    + + 
Sbjct: 243 ENQVKGQVKDVLVGSSLFDNVEVGLNLAMNFDQTTESTHEYYAPDGQTNGMVGSKSEYES 302

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE- 355
           +      +    + N        V       ++   E  +NY+ N K   TT     +  
Sbjct: 303 NAVGGAAATPGTDSN--DDDTTYVMEDNDYTSSSVSETNTNYQNNEKITTTTPAVGTVNY 360

Query: 356 ---RLSIAVVVNKGRLTEVLGRSA---------------DQGKIDSYLAEINKIVSAATG 397
               +S AV  N     E   R++                +        ++  ++S ATG
Sbjct: 361 DGSSIS-AVATNYVIYDEDTLRASGTLGDMTFDEYVVANSEPVKAEVDQDLYTLISNATG 419

Query: 398 INSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457
                   + ++++  +                       T+ + L  ++  L+   LG 
Sbjct: 420 --------VPVSNITII--------AYDQPMFQYSKGSTRTISDYLQIILAVLIFALLGY 463

Query: 458 HALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS 517
              R                        S+     + P   ++++S  +     S +   
Sbjct: 464 VVFR------------------------STRKEKAVEPEPELSVESLLEST-KESADTLQ 498

Query: 518 RINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
            I      ++ + +   +E N E  A +LR W   E E
Sbjct: 499 DIGFNEKSETRVLIEKFVEENPEAAASLLRNWLNEEWE 536


>gi|303240288|ref|ZP_07326807.1| flagellar M-ring protein FliF [Acetivibrio cellulolyticus CD2]
 gi|302592198|gb|EFL61927.1| flagellar M-ring protein FliF [Acetivibrio cellulolyticus CD2]
          Length = 524

 Score =  207 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 87/560 (15%), Positives = 188/560 (33%), Gaps = 52/560 (9%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            +  ++ + +K+     + RI ++++++++ I + +     +    Y  L    +  D  
Sbjct: 7   KLQQRITELWKNLDKSQKGRIYVISAILVIAITVSIVM---LTRTTYVPLVTIDDTKDAA 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L +  I+++    G+ I V S    KA   LA+ G   +SS   +E    + S  
Sbjct: 64  EIEKVLQDKGINYK-PGEGNKILVDSKEKNKAEFALASSGF--TSSGMNFEDAWNLVSIT 120

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI--GARPTASVMIRA 179
            T   ++       +  +   ++    +  A + + MP    F       + TA V I  
Sbjct: 121 STESDKKQLWENFKKNSLVAKLKMFDNVRDADIEVTMPKDSLFFDDTSSDKATAFVRIDP 180

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-NILGKSLSIVQAIQ 238
                 +  + I  +V+A++  LD  DVTV+D+   +L+ +  +          +   ++
Sbjct: 181 KGEITSEQVKGIVSVVSASIDGLDPKDVTVVDNNFNILSTDASDAIGDTSTQYKMKLKVK 240

Query: 239 HEIEMNINKALAA--FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS-KDAQ 295
            E+E NI K L        D     V   L  D Q+  +      + ++ ++  S  + +
Sbjct: 241 QELEKNI-KVLYPNKSSSYDYISVVVNPVLEFDKQKTTKKEVGKPNDIDEAVVSSHTEKE 299

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL- 354
                        + N  + +             +K     N + N            + 
Sbjct: 300 ELVNGANGGVPGTDSNPGNGTTTYPIQAGDNSTYNKTTTDINRQFNETMTEVEKAQGDIN 359

Query: 355 -ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
            ++ S+AV +  G+       + D      +LA+  +++S AT         I ++ +  
Sbjct: 360 FDQSSVAVTLWYGQKV-----ADDSAITPEFLAQCQQVISGAT--------NIPVSKISI 406

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
            + +L           D + ++                                      
Sbjct: 407 NKYKLAPEEVYTEPLSDKIQQYIEDY------------------------GYFALMLMLI 442

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
           +G    + P     A   G M +  +A  S  Q I          I+     +   ++  
Sbjct: 443 IGLLIAVIPRKKKEAAAVGEMLSPELATASGPQFIVPEDEEPVPEISYEEKSEVKKQIER 502

Query: 534 MIEINEERFAKILRKWARSE 553
            ++   E  A++LR W   +
Sbjct: 503 FVKEKPESVAQLLRNWLSDD 522


>gi|313905127|ref|ZP_07838496.1| flagellar M-ring protein FliF [Eubacterium cellulosolvens 6]
 gi|313470030|gb|EFR65363.1| flagellar M-ring protein FliF [Eubacterium cellulosolvens 6]
          Length = 563

 Score =  206 bits (524), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 103/584 (17%), Positives = 215/584 (36%), Gaps = 59/584 (10%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M IL++L + ++  +++ R  ++I+    +  + + +       +  Y  L+  L   + 
Sbjct: 1   MKILNKLKETWQQLSAMARRLLIIVLVGAVAFVAIGIVLLNQKKTTEYTTLFTGLNQEES 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   + E    +       +I VP     K R  + ++G P S     Y ++   +  
Sbjct: 61  REIVSMIQEEGKQYLYDAGSGTIQVPVEQADKLRAEILSKGYPQSGFT--YSMYVGNSGI 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-----------KIGA 169
             T   +E   +  L+  +  TI+   G+  A+V I   D   +                
Sbjct: 119 MATESDKEQYTLYDLQDRLGATIRLFDGVRDAKVTIAQADDDGYVLDEDGDTKSNSDDDV 178

Query: 170 RPTASVMIRAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLD-STGKLLTANEMERNI 226
             +ASV++     S    K+A+AIR+LVA +V  ++  +V+V D +T + +  N  + + 
Sbjct: 179 NASASVVVTMKRGSELTEKNADAIRNLVARSVRGINFTNVSVFDAATMQEIGGNADDESA 238

Query: 227 LGKSL-SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVE 285
             +++  + + +++ I  N+ K LA    ++N   AV  +L+  T       Y    + +
Sbjct: 239 NSEAVNELTKQVENNIAANVKKVLAKLYHMENVEVAVRGKLDTSTLLSENTQYTVPVQAD 298

Query: 286 RSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPR-SLENTDKKEEQSNYEINTKS 344
            + +        + S               +D     PR + EN    +E S+++ +T  
Sbjct: 299 STDKEGLLDHEEDASAYTGPGAATAAGVAGTDANADTPRYTTENGANGDEYSSFDTSTSR 358

Query: 345 I--------ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT 396
                        +   L+  ++AVV++            +   +D    ++  +V+ A 
Sbjct: 359 QWLYNTLKEQVQRNPGTLQDCTVAVVID-----------TEDTSVDE--NDLINLVADAA 405

Query: 397 GINSRRGD---TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVT 453
           GI+  R D    IT+      +     +   + +      R    +I A V         
Sbjct: 406 GIS--REDAPEKITVVRSAIPKATATPTPGPEDNSEAEQQRQQMIIIAAAV--------- 454

Query: 454 FLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR 513
                A   L  I    +G+   K         +A           A  ++         
Sbjct: 455 ----GAFLFLLLIILIIRGKKKKKKQRELEAQLAAEQEAAELAAAEAEAAAAAQSEKELS 510

Query: 514 NLQSRINSYVSKQSDLR--LLHMIEINEERFAKILRKWARSEIE 555
             +S  N +V++  +L+  +   +E N +  AK+++ W R   E
Sbjct: 511 EEESASNEHVARGQELKDNIGDFVEENPQVAAKLIQSWLREGDE 554


>gi|15639390|ref|NP_218839.1| flagellar MS-ring protein [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189025632|ref|YP_001933404.1| flagellar MS-ring protein [Treponema pallidum subsp. pallidum SS14]
 gi|6016022|sp|O83414|FLIF_TREPA RecName: Full=Flagellar M-ring protein
 gi|3322682|gb|AAC65387.1| flagellar basal-body M ring protein (fliF) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189018207|gb|ACD70825.1| flagellar basal-body M ring protein [Treponema pallidum subsp.
           pallidum SS14]
 gi|291059789|gb|ADD72524.1| flagellar M-ring protein FliF [Treponema pallidum subsp. pallidum
           str. Chicago]
          Length = 567

 Score =  206 bits (524), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 104/589 (17%), Positives = 205/589 (34%), Gaps = 73/589 (12%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLY-VKLEVSDVNR-I 63
           +L   +K  T + ++   +LA   LV +M  +    +   P    L    +    V   I
Sbjct: 11  KLKTQWKKWTLVQKS---VLAGAALVSVMGVVVLLTWSAKPTLVPLIDTPITDETVREKI 67

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGK-ARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
            + L+E N+   +S  G  ISV      +  R  L  + L   + +  + +FD V  +  
Sbjct: 68  ILRLNEENVRATVSSVG-LISVSDEKTARRMRSILIREDLIPKNVDP-WAIFD-VERWTR 124

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T F + +   RA+   +   I+++  I  A V I +P+   F+      TASV+I     
Sbjct: 125 TDFERRVDVRRAINNTVTNHIKALDDIDDAHVVINVPEDALFQADQKPITASVVIFPKPS 184

Query: 183 SV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-----ILGKSLSI 233
           S      K  E I+ L+  AVP L   ++T++DS   +L   E  ++     ++ K   +
Sbjct: 185 STIASERKKIEGIQKLLKLAVPGLKDENITIVDSDATVLNDFEGFKDADRLSLIEKQQKM 244

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRS-AVVAELNMDTQQIREIVYDP------------ 280
           +  ++ + E  +   L    G D  R   +  E+++  +  +   Y P            
Sbjct: 245 IAKLESQYEAKVLALLQKTYGKDRVRDLNIKIEMDLSEKTSQTTKYLPIEIRQDNPDTPW 304

Query: 281 -DSKVERSIRLSKD----AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ 335
            DS+V  S+    +      +     PE    VE   P               +  K+++
Sbjct: 305 DDSQVVPSVTSISETATTTWQGTGLNPEGPPGVEGQTPPAYKDMSNQVGLSNQSVVKKQE 364

Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG-----------RSADQGKIDSY 384
               I+   I        L R +++V ++     +                         
Sbjct: 365 ---AISKSEINEVVSPV-LGRRTVSVNIDGEWRKKRDEHGRFIVKEGHIEREYIPISAEE 420

Query: 385 LAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALV 444
           L E  K V  A G ++ R D++++ ++ F     F+          +  +    +I   +
Sbjct: 421 LREATKAVQDAIGFDAGRKDSVSVLNIKFDRTSEFDREDEHY----LRVQQRNMIILYSL 476

Query: 445 FLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSS 504
             V  +L  F+    + +   ++  ++                A+        N+++   
Sbjct: 477 ASVAIVLFIFMVYKVISK--EVERRRRLREEELLRQQQLMRERALWEAEQAGMNVSMSVE 534

Query: 505 NQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
            +       N                +L+M   + E  A ++R W   E
Sbjct: 535 ERKRLELQEN----------------VLNMAREHPEDVALLVRTWLMEE 567


>gi|84502563|ref|ZP_01000699.1| flagellar FliF M-ring protein [Oceanicola batsensis HTCC2597]
 gi|84389375|gb|EAQ02172.1| flagellar FliF M-ring protein [Oceanicola batsensis HTCC2597]
          Length = 238

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 83/237 (35%), Positives = 137/237 (57%), Gaps = 3/237 (1%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +    ++  +LG+ R++ L    +V ++        V  P Y  LY  L  S+ +R+  A
Sbjct: 1   MQALLENLKALGQGRLIALGVTGVVLVLATFFGVRAVLEPSYSTLYRDLTPSEASRMVGA 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L  A    ++  +GS +SVP   + +AR+ LA QGL      +G+E+FD+ +  G+ SFM
Sbjct: 61  LEGAGFAVQVDSSGSILSVPQEDLARARMELAGQGLV-GDGAAGWEIFDEASGLGMNSFM 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV-- 184
           Q+I R+RALEGE+AR+IQ+I G+ AARVH+V+P+  +F +   +P++SV+IR+       
Sbjct: 120 QKINRLRALEGELARSIQTIDGVDAARVHLVLPEREAFSRERPQPSSSVIIRSRAGHQVN 179

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEI 241
            + A+AIR LV++AVP +  G VTVL + G+ + A E          S+  +++  I
Sbjct: 180 LRQAQAIRALVSSAVPEMSPGRVTVLTANGETILAEEGTDVAEVTQQSLKASVEDRI 236


>gi|116514986|ref|YP_802615.1| hypothetical protein BCc_043 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116256840|gb|ABJ90522.1| flagellar basal-body MS-ring and collar protein [Buchnera
           aphidicola str. Cc (Cinara cedri)]
          Length = 489

 Score =  203 bits (517), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 91/439 (20%), Positives = 164/439 (37%), Gaps = 58/439 (13%)

Query: 1   MAILDQLLQFFKSGTSLG------RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVK 54
           M  + +L  FF+    L         +I  +  V L+ I+  ++   +    HY  LY  
Sbjct: 1   MNFIKKL--FFQIKKKLNYLFFCILKKIKYIFFVSLISIISIISIFLWSKKVHYVVLYNN 58

Query: 55  LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114
           L   D   I   L   +I +R +++  ++ VP   +    + L          N G+EL 
Sbjct: 59  LSQEDSKWIISRLKILHIPYRCNNSFKTLLVPEDKINILNLSLLKN-NNILKKNFGFELL 117

Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174
           DK   FG++ F + I   R LEGE+++T++ I  I  ARVH+V      F +    P+AS
Sbjct: 118 DKE-KFGISQFHEHINYHRGLEGELSKTLEQIFPIQCARVHLVCKKDTDFFENNQIPSAS 176

Query: 175 VMIRAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS 232
           V+I         Y+   AI  L++ +VP+L   ++ ++D  G +L   ++       +  
Sbjct: 177 VIITLFPNMHLTYEQINAIILLISGSVPDLSSDNIVLVDQFGNILNKYDLNHTKFFNNSQ 236

Query: 233 IVQ--AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR--EIVYDPDSKVERSI 288
             +   ++      I   L   L   +F   V  +L  D       +  Y+ + K++ S 
Sbjct: 237 YKKITILEEYYSQRIKDILLPILDSKDFVVQVTTKLKKDNHASTFSDKNYNVNQKIDNSF 296

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
                    E +     +TV  N                N+ K    S  E+N       
Sbjct: 297 I---SPNFKELNIKNIKITVLINY------------KKNNSGKMVPLSKNELN------- 334

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
                +E L  +V+                    + L  I  +V +   ++  +GD I +
Sbjct: 335 ----NIENLVKSVI----------------NLSKNKLNNIENLVKSVINLSKNKGDRINL 374

Query: 409 TSMDFLENQLFNSGTVQVS 427
            +  FL+       +  + 
Sbjct: 375 INYMFLDTPSVIDASYSLK 393


>gi|328947994|ref|YP_004365331.1| flagellar M-ring protein FliF [Treponema succinifaciens DSM 2489]
 gi|328448318|gb|AEB14034.1| flagellar M-ring protein FliF [Treponema succinifaciens DSM 2489]
          Length = 568

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 105/592 (17%), Positives = 221/592 (37%), Gaps = 74/592 (12%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKL--EVSDVN 61
           L+ + + +   T+L +  +  +  V +  I+L  +     + P    L+     +  +  
Sbjct: 9   LETIKEKWAKWTTLQKAIVAAIIVVAIAVIVLMASM---SSRPSTVRLFNGPVNDEKERE 65

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGK-ARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            I   L + N+   +S + + ISV +S + K  R  L A+G   SS ++ Y LFD V  +
Sbjct: 66  LILSRLDQDNVKAYVSSD-NYISVENSDIAKKYRSRLIAEGYAPSSLDA-YSLFD-VTRW 122

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
             T F  ++   RA E  + + ++S+ GI  A V++V+PD   F +     +AS+++ A 
Sbjct: 123 SRTDFDDKVNWQRATETALKQQLESLDGIQRAEVNLVLPDEALFTENQNPTSASIVLYAK 182

Query: 181 NPSVYKS----AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG------KS 230
             S   +       I++L+ A V  L   ++ + D    +   +              K 
Sbjct: 183 GNSDVLTDKRKIRGIQNLIKACVEGLRDENIVINDGASNVQINDFEGMAESDRISNIEKQ 242

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRS-AVVAELNMDTQQIREIVY--------DP- 280
             ++   +      + KAL      D  R   +  ++NM  ++     Y        +P 
Sbjct: 243 RKLILKQETTYTGLVLKALKGTFSDDRVRVANIKIDMNMSERKTTSKEYTGITIRPDNPN 302

Query: 281 ----DSKVERSIRLSKD----AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332
               DS++  S+ LS++    +       PE    VE   P V      +   +  + ++
Sbjct: 303 TPYDDSEIVNSLTLSEETVNKSFTGTGYNPEGPAGVEGQNPPVYSD---MSNVVGKSTEE 359

Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS-----------ADQGKI 381
             + NY +N K+++      +++R++++V ++          +                 
Sbjct: 360 GVKRNYALNEKNVSEITSP-QIDRITVSVNIDGQWRKVYDENNRPILENGHLKREYIPIT 418

Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441
              L    K+V  A G N  RGD++T+T++ F   +        ++++  L+R+      
Sbjct: 419 PEQLVNTTKLVQDAVGYNKSRGDSVTVTNIPFDRTE--EQEKEDLAYIAQLNRNRT---- 472

Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501
                        +       +  I       +  +          A           AL
Sbjct: 473 ------------IMFSLIGIAIILIAFIAFRIISREIERRRRLAEEARIRQQEEERQRAL 520

Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             + Q     + +++ R  + + + +      M + + E  A ++R W   E
Sbjct: 521 LEAQQQGMEVTMSVEERKRAELQENAI----AMAKEHPEDVAMLIRTWLMEE 568


>gi|88800454|ref|ZP_01116018.1| flagellar M-ring protein FliF [Reinekea sp. MED297]
 gi|88776784|gb|EAR07995.1| flagellar M-ring protein FliF [Reinekea sp. MED297]
          Length = 318

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 61/336 (18%), Positives = 133/336 (39%), Gaps = 33/336 (9%)

Query: 226 ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVE 285
           +  +     + ++  +   +N  L+  +G D F++ V A+++    +  E +++PD   +
Sbjct: 1   MTNRQFEYQRKVEESMLARVNSILSPIIGGDKFQAEVSADIDFTKVEQAEELFNPDLIAK 60

Query: 286 RSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV------PLPRSLENTDKKEEQSNYE 339
           RS +   + +  E  +         N P                     + + E   NYE
Sbjct: 61  RSEQTISEERVGE--EQGGIPGALTNQPPTDAEAPEEVDGQGQANGPPRSSRDEATINYE 118

Query: 340 INTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEINKIVSAATGI 398
           ++     T     ++ RL++AVVV+   +T+   G +  Q   ++ L  +  +V  A G 
Sbjct: 119 VDRTLSYTQFQQGRVRRLTVAVVVDDLEVTDPETGETVTQAWDEASLQRLRTLVQDAVGY 178

Query: 399 NSRRGDTITITSMDFLENQLFNSGTV---QVSFMDILSRHFATVINALVFLVGTLLVTFL 455
           ++ RGD+I + + +FL  Q          +  F +I  +           ++  L V  L
Sbjct: 179 DASRGDSINVINSEFLAEQDAVEQVPFYAEPWFWEIAKQ-----------ILAGLFVLIL 227

Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQ-DIFSHSRN 514
               LR       AK  +   +S          V   L+ +D ++L + ++ ++   S +
Sbjct: 228 IFGILRPAVRNLLAKGEDEQAESDEDAALAQLDVDEDLIADDKVSLSAVDEYNLPGPSES 287

Query: 515 LQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
            + ++++         L  +I  +  R A +L++W 
Sbjct: 288 FERQLDA---------LRGLIAEDPGRVALVLKRWI 314


>gi|167750730|ref|ZP_02422857.1| hypothetical protein EUBSIR_01708 [Eubacterium siraeum DSM 15702]
 gi|167656409|gb|EDS00539.1| hypothetical protein EUBSIR_01708 [Eubacterium siraeum DSM 15702]
          Length = 542

 Score =  200 bits (509), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 82/432 (18%), Positives = 182/432 (42%), Gaps = 42/432 (9%)

Query: 3   ILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           + D+L  F+       +SL +   + + + + V I+  +     +N   Y  +Y  L+  
Sbjct: 1   MKDKLSAFWSGFKDKWSSLAKNLRIFIITAVSVVIVAAIVLAIVLNQKGYTAIYTGLDSE 60

Query: 59  DVNRISVALSEANI-DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
           + +++  A++E  I D ++  +G SISVPS      R+ L+ QG P S+ N  +++++  
Sbjct: 61  ESSQVVSAINELGITDVKMGTDG-SISVPSDQADNVRMQLSIQGYPKSTFN--FDVWNSG 117

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARPTASV 175
                T   +++ +++ L+  + + I +IS +  + V I MP+  ++        P  SV
Sbjct: 118 IGIWSTDTEKKVLQIQQLQTHLMKAINTISAVKNSYVIITMPENSNYVISTDSEEPRVSV 177

Query: 176 MIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKS 230
            +   N         E I  LV  ++P L+  ++++LDS GKLL+       E  +    
Sbjct: 178 KLDLKNGAQLTSDQVEGIYALVLNSLPGLERENISILDSDGKLLSGENTTVEEDVLYQSR 237

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290
           L+  + +Q  ++  +N  L       ++   V  +LN D  +    +Y P   V      
Sbjct: 238 LNFQEQMQSLLKSQLNDTLKKLYK--DYTINVNVKLNYDNSKSEYTIYTP--SVAEDGTS 293

Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYE--------INT 342
               + S  ++    +     +   +      P     T   + Q  Y+        +NT
Sbjct: 294 GGMIESSTKNEGWGGIGSLSGVVGTTSNSDISPNYPTITGDGDNQYYYQNSITVKRLVNT 353

Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402
           +      + Y +++++ AV V++  +            +++   ++ ++++ A G +   
Sbjct: 354 EIRQLEKNGYSVDKITAAVTVDQINM------------LEADKEQLREVIAFAIGADVA- 400

Query: 403 GDTITITSMDFL 414
              +T+ +  F+
Sbjct: 401 --NVTVANYPFV 410


>gi|239628992|ref|ZP_04672023.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519138|gb|EEQ59004.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 537

 Score =  200 bits (508), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 93/568 (16%), Positives = 200/568 (35%), Gaps = 48/568 (8%)

Query: 1   MAILDQLLQFFKSGTSLGR-----TRILILASVILVPIMLFMAARFFVNSP--HYDNLYV 53
           M I ++L         +GR      +  + A +    ++   A+         +Y  L+ 
Sbjct: 1   MGIKEKLKSVSGEKGGIGRVLDTGKKKAVAAGITAAVVIALAASVLLNTKKSGNYVALFP 60

Query: 54  KLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYEL 113
            +   + N +   L+   ++ R +  G  ++VP   +G   + ++  G P ++    +++
Sbjct: 61  GISKEENNEVLTVLNARGVEARRNSEG-EVTVPEDQLGDIMLDMSELGYPKTALP--FDI 117

Query: 114 FDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARP 171
           F     F  T F +    +  L+  I RT++ ++G+  A V + +PD  ++   + G+  
Sbjct: 118 FSDNMGFTTTEFEKRQYLLMNLQDRIERTLKDMTGVKNAIVTLNVPDESNYVWDEGGSNS 177

Query: 172 TASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDS-TGKLLTANEMERNILG 228
           T S+ +  +       +   AI++LVA +VP L   +VTV+++ T + + A+++     G
Sbjct: 178 TGSISLTLMPSYELSPEKVSAIKNLVADSVPRLLPENVTVVNAETMQEMVADDIGTTSYG 237

Query: 229 -KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP--DSKVE 285
              L     ++  +E  I   L      D  R +    ++ D     ++ Y+P  + +  
Sbjct: 238 LNRLDFEAKVEERLENKIKNVLTLAYSPDKLRVSATVVIDYDRMITEDLHYEPQDNGQGV 297

Query: 286 RSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSI 345
                   +     +        E N    +            T       +Y ++    
Sbjct: 298 VEQYKEGRSLNGGAAGAGGIAGEENNTDIPAYGTAGTGGGAGGTGDYYRDVDYLVSYIKK 357

Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
               DN KL++ ++A+ VN            D    DS   ++    S A  I       
Sbjct: 358 QIEKDNVKLQKATVAITVN------------DDNLTDSKKQQLIDAASKAANIAPE---D 402

Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465
           I ++S   +  +   +    +             + A    VG L+   L L  +R    
Sbjct: 403 IVVSSFREIPKETVKNDKPALPVQAPAQTGLDYRLIAAAAGVGILIFLLLLLLLMR---- 458

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
               KK  +    +L  P                A D+    +     +    ++     
Sbjct: 459 --SRKKKHLKEDQMLFAPFEDGDTQEPESVEQRAAEDAVQNSLGRIQPDSSDPVD----- 511

Query: 526 QSDLRLLHMIEINEERFAKILRKWARSE 553
               ++    ++N E  A ++  W + +
Sbjct: 512 ----QVRSFAQMNPEIIASMISSWLKED 535


>gi|74317106|ref|YP_314846.1| flagellar biosynthesis/type III secretory pathway lipoprotein FliF
           [Thiobacillus denitrificans ATCC 25259]
 gi|74056601|gb|AAZ97041.1| flagellar biosynthesis/type III secretory pathway lipoprotein FliF
           [Thiobacillus denitrificans ATCC 25259]
          Length = 381

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 98/397 (24%), Positives = 159/397 (40%), Gaps = 71/397 (17%)

Query: 18  GRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS 77
              R L LA +ILVP+    AA  + N P Y  LY +L       +  AL +  I +R+S
Sbjct: 16  SPWRRLTLALLILVPLGALAAAYIWFNPPAYRVLYGQLSDRVGGEVIGALEQLGIPYRLS 75

Query: 78  DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137
                I VP   +  AR  LAA GLP S ++   ++ ++  SFGL+S  Q+  + RALE 
Sbjct: 76  AGDGRIEVPVDTLHVARYRLAALGLPRSDADVEADV-ERAPSFGLSSLQQQQRQQRALEH 134

Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYKSAEAIRHLV 195
           E+AR+IQS+  +  ARVH+ +P +  F +   R TA+V++R         +    I+ LV
Sbjct: 135 ELARSIQSLEAVELARVHLALPKVSPFLRDAPRATAAVLVRLRPRAQLSTEQVTTIQTLV 194

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255
           AAAVP +   DV VLD  G +L     E        S+  A++ ++       L  +LG 
Sbjct: 195 AAAVPRMKRADVQVLDPRGVVLGGAAPEIEP-----SLRVALEQDLARRALAVLTPWLGA 249

Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV 315
           +     V A L   T +           VER  R++ + Q                    
Sbjct: 250 ERVSVQVTATLEDATTRET---------VERMRRVAGEGQARP----------------- 283

Query: 316 SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS 375
                                   +      T     ++ R+   V++      +     
Sbjct: 284 ------------------------LEKTVRTTVEPEGRIRRIDAIVILAFDAAPD----- 314

Query: 376 ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
                    + + +++   A G+   RGD + + ++ 
Sbjct: 315 --------EIRKADELARQALGLQPARGDALNVYALP 343


>gi|291558199|emb|CBL35316.1| flagellar basal-body M-ring protein/flagellar hook-basal body
           protein (fliF) [Eubacterium siraeum V10Sc8a]
          Length = 541

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 82/432 (18%), Positives = 182/432 (42%), Gaps = 42/432 (9%)

Query: 3   ILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           + D+L  F+       +SL +   + + + + V I+  +     +N   Y  +Y  L+  
Sbjct: 1   MKDKLSAFWSGFKDKWSSLAKNLRIFIITAVSVVIVAAIVLAIVLNQKGYTAIYTGLDSE 60

Query: 59  DVNRISVALSEANI-DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
           + +++  A++E  I D ++  +G SISVPS      R+ L+ QG P S+ N  +++++  
Sbjct: 61  ESSQVVSAINELGITDVKMGTDG-SISVPSDQADNVRMQLSIQGYPKSTFN--FDVWNSG 117

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARPTASV 175
                T   +++ +++ L+  + + I +IS +  + V I MP+  ++        P  SV
Sbjct: 118 IGIWSTDTEKKVLQIQQLQTHLMKAINTISAVKNSYVIITMPENSNYVISTDSEEPRVSV 177

Query: 176 MIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKS 230
            +   N         E I  LV  ++P L+  ++++LDS GKLL+       E  +    
Sbjct: 178 KLDLKNDAQLTSDQVEGIYALVLNSLPGLERENISILDSDGKLLSGENTTVEEDVLYQSR 237

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290
           L+  + +Q  ++  +N  L       ++   V  +LN D  +    +Y P   V      
Sbjct: 238 LNFQEQMQSLLKSQLNDTLKKLYK--DYTINVNVKLNYDNSKSEYTIYTP--SVAEDGTS 293

Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYE--------INT 342
               + S  ++    +     +   +      P     T   + Q  Y+        +NT
Sbjct: 294 GGMIESSTKNEGWGGIGSLSGVVGTTSNSDISPNYPTITGDGDNQYYYQNSITVKRLVNT 353

Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402
           +      + Y +++++ AV V++  +            +++   ++ ++++ A G +   
Sbjct: 354 EIRQLEKNGYSVDKITAAVTVDQVNM------------LEADKEQLREVIAFAIGADVA- 400

Query: 403 GDTITITSMDFL 414
              +T+ +  F+
Sbjct: 401 --NVTVANYPFV 410


>gi|326791543|ref|YP_004309364.1| flagellar M-ring protein FliF [Clostridium lentocellum DSM 5427]
 gi|326542307|gb|ADZ84166.1| flagellar M-ring protein FliF [Clostridium lentocellum DSM 5427]
          Length = 529

 Score =  197 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 90/577 (15%), Positives = 200/577 (34%), Gaps = 82/577 (14%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYV-KLEVSDV 60
            I +Q+ +   + T   + +I     + ++ +++ + A   +  P   NL+   L+   +
Sbjct: 7   QISNQITEKLNNLTKKQKIQI----GIGVLALIIAITAVVLLTRPKMKNLFSENLDSKSI 62

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +++  L+E  I +++ ++ ++I V  +   +A ++ A   +P S       +    N+ 
Sbjct: 63  GQVATVLNENGIKYKLINDSTNIQVQENQYEQALMYTAMSDVPESGMTFDQVI---NNTM 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM-GSFRKIGARPTASVMIRA 179
             T            + ++ RT++S+ GI +ARV +V+P+   ++ +      AS+ +  
Sbjct: 120 STTQTEMTAKNNEYKKQQLERTLRSMEGIESARVELVIPEQKNAYLQSQVESRASIFLTL 179

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI-LGKSLSIVQAIQ 238
                 K  E I   ++++V NLD  ++ V+DS G  L +   E  + L K   I    +
Sbjct: 180 SKTLTTKQCEGIATYISSSVANLDKKNIVVIDSQGNTLYSGSEESQLGLNKQQEIKLLAE 239

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK------VERSIRLSK 292
            ++   ++  L      D+ R +    L+ D  Q     Y    +      +++  + S 
Sbjct: 240 QDVTQKVSNLLGNMY--DDVRVSPNLILDFDQYQESSQKYQTQGEDESRGVIQQETQASS 297

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
             + ++T       T   ++P           S E     ++   Y  +        +  
Sbjct: 298 STKNNQTGAEPGTTTNGGDIPTYQTNNGTSGESKET----QKDITYAPDKTESVYVKNPG 353

Query: 353 KL--ERLSIAV-VVNKGRLTEVLGRSADQGKIDSYL-------------AEINKIVSAAT 396
            +  E+ S++V +       E   +    G   +                 I   V +AT
Sbjct: 354 NVDLEKSSLSVNLFKNKIYREEEVKPTLTGMTWNEFKVSNREQRTLAVDESIVNSVKSAT 413

Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456
           GI+        +    +      +    Q+ + D L   F  +   L+  V         
Sbjct: 414 GID-------NVVVNAYENPIFLDQEVYQIDYKDYLPLVFLVLALLLIAFVVLRF----- 461

Query: 457 LHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ 516
                R H      + E+  + +L        +                           
Sbjct: 462 -----RKHEEIVEVEPELEVEEMLKAAKEQVELEE------------------------- 491

Query: 517 SRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             I    + ++  ++   ++   E  A +LR W   E
Sbjct: 492 --IELKETLETKRQIDKFVDEKPEAVANLLRNWLTEE 526


>gi|224531746|ref|ZP_03672378.1| flagellar M-ring protein FliF [Borrelia valaisiana VS116]
 gi|224511211|gb|EEF81617.1| flagellar M-ring protein FliF [Borrelia valaisiana VS116]
          Length = 569

 Score =  197 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 97/593 (16%), Positives = 199/593 (33%), Gaps = 73/593 (12%)

Query: 3   ILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           + +    FF S           + + L  +I   I+ F+             L+  +E+ 
Sbjct: 1   MSNFFTNFFVSAKGIFKKASTVQKIALGLIIFFVILAFVFLIGLSTKSQSIALF-GVEIK 59

Query: 59  D---VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115
           D   ++RIS  L   N+ + +S +G        +  K R  L  + L     +       
Sbjct: 60  DQYLLDRISQRLDRENVKYFLSSDGRIYLDDEKLAKKMRAILVREELVPIHMDPWA--LF 117

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
            ++ + +T F + I   R++   + + I ++  + A  V++VMP+   F++      ASV
Sbjct: 118 DIDRWTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKEAQEPVKASV 177

Query: 176 MIRAINPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NI 226
            I     S      K  E +  L+  A+  L+  ++ ++D++G +L            ++
Sbjct: 178 RITPRPGSDIITNRKKVEGLVKLIQYAIEGLESDNIAIVDNSGTILNDFSNLDGIDRIDL 237

Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP----- 280
             K   +    +  +   I+ AL+  L VD F  + V  +L+   + I    Y P     
Sbjct: 238 AEKERKLKLKYEAMLRGEIDSALSKVLSVDRFMIARVNVKLDTSKETIESKEYAPIELQS 297

Query: 281 -DSKV-----------ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
            D K              S +  K   + +   P      E N P        +      
Sbjct: 298 QDPKASYNTRKVSDSTIISSQTQKKEYQGQGYSPWGPPGQEGNTPPEYQDLSDITG---K 354

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR-----------LTEVLGRSAD 377
            ++ +E  N  +N K   +  +  ++  +S+ + V+              +   + +   
Sbjct: 355 YNESQEIKNVALNEKKSTSEKEPARIVGVSLGIFVDGIWSFVYDEKGNFVIENGMRKREY 414

Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437
           +      +  I  ++ ++      RGD+IT+ ++ F     F             S  F 
Sbjct: 415 KPMALEEIKNIEDVLQSSFEYKPERGDSITVRNISFDRMNEFRKIDENY----FASERFK 470

Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497
             +     +   L++ F    A+ R        + E   K        +   +   +  D
Sbjct: 471 YFLFIASIIFSLLILVFTIFFAISRELERRRRLREEELAKQAHLRRQQALMDSGDDIGVD 530

Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
           ++       D    +  L +R                     E  AK++R W 
Sbjct: 531 DVVGGIREGDELQSNAELLAR------------------EKPEDVAKLIRTWL 565


>gi|224534391|ref|ZP_03674969.1| flagellar M-ring protein FliF [Borrelia spielmanii A14S]
 gi|224514493|gb|EEF84809.1| flagellar M-ring protein FliF [Borrelia spielmanii A14S]
          Length = 569

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 94/593 (15%), Positives = 198/593 (33%), Gaps = 73/593 (12%)

Query: 3   ILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           + +    FF S           + + L  +I   ++ F+             L+  +E+ 
Sbjct: 1   MSNFFTNFFVSAKGIFKKASTVQKIALGLIIFFVVLAFIFLIGLSTKSQSIALF-GVEIK 59

Query: 59  D---VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115
           D   ++RIS  L   N+ + +S +G        +  K R  L  + L     +       
Sbjct: 60  DQYLLDRISQRLDRENVKYILSSDGRIYLDDEKLAKKMRAILVREELVPVHMDPWA--LF 117

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
            ++ + +T F + I   R++   + + I ++  + A  V++VMP+   F++      ASV
Sbjct: 118 DIDRWTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKESQEPVKASV 177

Query: 176 MIRAINPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NI 226
            I     S      K  E +  L+  A+  L+  ++ ++D++G +L            ++
Sbjct: 178 RITPRPGSDIITNRKKIEGLVKLIQYAIEGLESDNIAIVDNSGTILNDFSNLDGIDRIDL 237

Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP----- 280
             K   +    +  +   I+ AL   L VD F  + +  +L+   +      Y P     
Sbjct: 238 AEKERKLKLKYEAMLRGEIDSALGKVLSVDRFMIARINVKLDTSKETTESKEYAPIELQS 297

Query: 281 -DSKV-----------ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
            D K              S +  K   + +   P      E N P        +      
Sbjct: 298 QDPKASYNTRKVSDSTIISSQTQKKEYQGQGYSPWGPPGQEGNTPPEYQDLSDITG---K 354

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR-----------LTEVLGRSAD 377
            ++ +E  N  +N K   +  +  ++  +S+ + V+              +   + +   
Sbjct: 355 YNEYQEIKNVALNEKKSTSEKEPARIVGVSLGIFVDGIWNFVYDEKGNFVIENGMRKREY 414

Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437
           +      +  I  ++ ++      RGD+IT+ ++ F     F             S  F 
Sbjct: 415 KPMALEEIKNIEDVLQSSFEYKPERGDSITVRNISFDRMNEFREMDENY----FASERFK 470

Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497
             +     +   L++ F    A+ R        + E   K        +   +   +  D
Sbjct: 471 YFLFIASIIFSLLILMFTIFFAISRELERRRRLREEELAKQAHLRRQQALMDSGDDIGVD 530

Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
           ++       D   ++  L +R                     E  AK++R W 
Sbjct: 531 DVVGGIREGDELQNNAELLAR------------------EKPEDVAKLIRTWL 565


>gi|291532064|emb|CBK97649.1| flagellar basal-body M-ring protein/flagellar hook-basal body
           protein (fliF) [Eubacterium siraeum 70/3]
          Length = 542

 Score =  196 bits (499), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 81/432 (18%), Positives = 181/432 (41%), Gaps = 42/432 (9%)

Query: 3   ILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           + D+L  F+       +SL +   + + + + V I+  +     +N   Y  +Y  L+  
Sbjct: 1   MKDKLSAFWSGFKDKWSSLAKNLRIFIITAVSVVIVAAIVLAIVLNQKGYTAIYTGLDSE 60

Query: 59  DVNRISVALSEANI-DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
           + +++  A++E  I D ++  +G SISVPS      R+ L+ QG P S+ N  +++++  
Sbjct: 61  ESSQVVSAINELGITDVKMGTDG-SISVPSDQADNVRMQLSIQGYPKSTFN--FDVWNSG 117

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARPTASV 175
                T   +++ +++ L+  + + I +IS +  + V I MP+  ++        P  SV
Sbjct: 118 IGIWSTDTEKKVLQIQQLQTHLMKAINTISAVKNSYVIITMPENSNYVISTDSEEPRVSV 177

Query: 176 MIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKS 230
            +   N         E I  LV  ++P L+  ++++LDS GKLL+       E  +    
Sbjct: 178 KLDLKNGAQLTSDQVEGIYALVLNSLPGLERENISILDSDGKLLSGENTTVEEDVLYQSR 237

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290
           L+  + +Q  ++  +N  L       ++   V  +LN D  +    +Y P   V      
Sbjct: 238 LNFQEQMQSLLKSQLNDTLKKLYK--DYTINVNVKLNYDNSKSEYPIYTP--SVAEDGTS 293

Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYE--------INT 342
               + S  ++    +     +   +      P         + Q  Y+        +NT
Sbjct: 294 GGMIESSTKNEGWGGIGSLSGVVGTTSNSDISPNYPTIKGDDDNQYYYQNSITVKRLVNT 353

Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402
           +      + Y +++++ AV V++  +            +++   ++ ++++ A G +   
Sbjct: 354 EIRQLEKNGYSVDKITAAVTVDQINM------------LEADKEQLREVIAFAIGADVA- 400

Query: 403 GDTITITSMDFL 414
              +T+ +  F+
Sbjct: 401 --NVTVANYPFV 410


>gi|111115116|ref|YP_709734.1| flagellar MS-ring protein [Borrelia afzelii PKo]
 gi|216264082|ref|ZP_03436076.1| flagellar M-ring protein FliF [Borrelia afzelii ACA-1]
 gi|110890390|gb|ABH01558.1| flagellar basal-body rod protein [Borrelia afzelii PKo]
 gi|215980126|gb|EEC20948.1| flagellar M-ring protein FliF [Borrelia afzelii ACA-1]
          Length = 569

 Score =  196 bits (499), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 95/593 (16%), Positives = 192/593 (32%), Gaps = 73/593 (12%)

Query: 3   ILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           + +    FF S           + + L  +I   I+ F+    F        L+  +E+ 
Sbjct: 1   MSNFFTNFFVSAKGIFKKASTVQKIALGLIIFFVILAFVFLIGFSTKSQSIALF-GVEIK 59

Query: 59  D---VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115
           D   ++RIS  L   N+ + +S +G        +  K R  L  + L     +       
Sbjct: 60  DQYLLDRISQRLDRENVKYFLSSDGRIYLDDEKLAKKMRAILVREELVPVHMDPWA--LF 117

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
            ++ + +T F + I   R++   + + I ++  + A  V++VMP+   F++      ASV
Sbjct: 118 DIDRWTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKESQEPVKASV 177

Query: 176 MIRAINPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NI 226
            I     S      K  E +  L+  A+  L+  ++ ++D++G +L            ++
Sbjct: 178 RITPRPGSDIITNRKKVEGLVKLIQYAIEGLESDNIAIVDNSGTILNDFSNLDGIDRIDL 237

Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP----- 280
             K   +    +  +   I+ AL   L VD F  + V  +L+   +      Y P     
Sbjct: 238 AEKERKLKLKYEAMLRGEIDTALGKVLSVDRFMIARVNVKLDTSKETTESKEYAPIELQS 297

Query: 281 -DSKV-----------ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
            D K              S +  K   + +   P      E N P        +      
Sbjct: 298 QDPKASYNTRKVSDSTIISSQTQKKEYQGQGYSPWGPPGQEGNTPPEYQDLSDITG---K 354

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR-----------LTEVLGRSAD 377
            ++ +E  N  +N K   +  +  ++  +S+ + V+              +   + +   
Sbjct: 355 YNESQEIKNVALNEKKSTSEKEPARIVGVSLGIFVDGIWNFVYDEKGNFVIENGMRKREY 414

Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437
           +      +  I  ++ ++      RGD+IT+ ++ F     F             S  F 
Sbjct: 415 KPMALEEIKNIEDVLQSSFEYKPERGDSITVRNISFDRMNEFRKMDENY----FASERFK 470

Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497
             +     +   L++ F    A      I    +     +               LM   
Sbjct: 471 YFLFIASIIFSLLILVFTIFFA------ISRELERRRRLREEELAKQAHLRRQQALMDGG 524

Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
           +                LQ+                +     E  AK++R W 
Sbjct: 525 DDIGVDDVVGGIREGDELQNNAEL------------LAREKPEDVAKLIRTWL 565


>gi|51598551|ref|YP_072739.1| flagellar MS-ring protein [Borrelia garinii PBi]
 gi|51573122|gb|AAU07147.1| flagellar basal-body rod protein [Borrelia garinii PBi]
          Length = 569

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 93/593 (15%), Positives = 195/593 (32%), Gaps = 73/593 (12%)

Query: 3   ILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           + +    FF S           + + L  +I   I+ F+    F        L+  +E+ 
Sbjct: 1   MSNFFTNFFASAKGIFKKASTVQKIALGLIIFFVILAFVFLIGFSTKSQSIALF-GVEIK 59

Query: 59  D---VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115
           D   ++RIS  L   N+ + +S +G        +  K R  L  + L     +       
Sbjct: 60  DQYLLDRISQRLDRENVKYFLSSDGRIYLDDEKLAKKMRAILVREELVPVHMDPWA--LF 117

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
            ++ + +T F + I   R++   + + I ++  + A  V++VMP+   F++      ASV
Sbjct: 118 DIDRWTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKEAQEPVKASV 177

Query: 176 MIRAINPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NI 226
            I     S      K  E +  L+  A+  L+  ++ ++D++G +L            ++
Sbjct: 178 RITPRPGSDIITNRKKVEGLVKLIQYAIEGLESDNIAIVDNSGTILNDFSNLDGIDRIDL 237

Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP----- 280
             K   +    +  +   I+ AL+  L +D F  + V  +L+   +      Y P     
Sbjct: 238 AEKERKLKLKYEAMLRGEIDSALSKVLSIDRFMIARVNVKLDTSKETTESKEYAPIELQS 297

Query: 281 -DSKV-----------ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
            D K              S +  K   + +   P      E N P        +      
Sbjct: 298 QDPKASYNTRKVSDSTIISSQTQKKEYQGQGYSPWGPPGQEGNTPPEYQDLSDITG---K 354

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR-----------LTEVLGRSAD 377
            ++ +E  N  +N K   +  +  ++  +S+ + V+              +   + +   
Sbjct: 355 YNESQEIKNVALNEKKSTSEKEPARIVGVSLGIFVDGVWNFVYDEKGDFVIENGMRKREY 414

Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437
           +      +  I  ++ ++      RGD+IT+ ++ F     F     +  F     ++F 
Sbjct: 415 KPMALEEIKNIEDVLQSSFEYKPERGDSITVRNISFDRMNEFRKID-ENYFASERFKYFL 473

Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497
            + + +  L+      F           I    +     +               LM   
Sbjct: 474 FIASIMFSLLILAFTIFF---------AISRELERRRRLREEELAKQAHLRRQQALMDGG 524

Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
           +                LQ+                +     E  AK++R W 
Sbjct: 525 DDIGVDDVVGGIREGDELQNNAEL------------LAREKPEDVAKLIRTWL 565


>gi|224174161|ref|XP_002339855.1| predicted protein [Populus trichocarpa]
 gi|222832385|gb|EEE70862.1| predicted protein [Populus trichocarpa]
          Length = 312

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 63/213 (29%), Positives = 105/213 (49%), Gaps = 5/213 (2%)

Query: 1   MAILD--QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           M +L+  +  Q+F    SL  TR L L ++I V +   ++  F+   P    LY  L+  
Sbjct: 101 MPLLNAEKAGQWFDRLQSLQITRRLGLMAMIAVAVAAGLSVFFWSQKPGMVPLYTGLDQK 160

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
                +  L  A I F +      I+VP   +  AR+ LA  GL + S   G+EL ++  
Sbjct: 161 ATAEATDLLRAAQIPFALDPATGGITVPEKNLHDARLKLAGSGL-TDSGKLGFELMERDP 219

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178
            FG++ F++      ALE E++RTI ++  +  +RVH+ +P   +F +     +ASV + 
Sbjct: 220 GFGVSQFVESARYQHALETELSRTINTLRPVRDSRVHLAIPKPSAFTRQRDVASASVTLE 279

Query: 179 AINPSVYK--SAEAIRHLVAAAVPNLDMGDVTV 209
                  +    +AI H+VAA++P+L    VTV
Sbjct: 280 LRGGQQLERSQVDAIVHMVAASIPDLAPERVTV 312


>gi|219685754|ref|ZP_03540565.1| flagellar M-ring protein FliF [Borrelia garinii Far04]
 gi|219672693|gb|EED29721.1| flagellar M-ring protein FliF [Borrelia garinii Far04]
          Length = 569

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 93/593 (15%), Positives = 195/593 (32%), Gaps = 73/593 (12%)

Query: 3   ILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           + +    FF S           + + L  +I   I+ F+    F        L+  +E+ 
Sbjct: 1   MSNFFTNFFVSAKGIFKKASTVQKIALGLIIFFVILAFVFLIGFSTKSQSIALF-GVEIK 59

Query: 59  D---VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115
           D   ++RIS  L   N+ + +S +G        +  K R  L  + L     +       
Sbjct: 60  DQYLLDRISQRLDRENVKYFLSSDGRIYLDDEKLAKKMRAILVREELVPVHMDPWA--LF 117

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
            ++ + +T F + I   R++   + + I ++  + A  V++VMP+   F++      ASV
Sbjct: 118 DIDRWTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKEAQEPVKASV 177

Query: 176 MIRAINPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NI 226
            I     S      K  E +  L+  A+  L+  ++ ++D++G +L            ++
Sbjct: 178 RITPRPGSDIITNRKKVEGLVKLIQYAIEGLESDNIAIVDNSGTILNDFSNLDGIDRIDL 237

Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP----- 280
             K   +    +  +   I+ AL+  L +D F  + V  +L+   +      Y P     
Sbjct: 238 AEKERKLKLKYEAMLRGEIDSALSKVLSIDRFMIARVNVKLDTSKETTESKEYAPIELQS 297

Query: 281 -DSKV-----------ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
            D K              S +  K   + +   P      E N P        +      
Sbjct: 298 QDPKASYNTRKVSDSTIISSQTQKKEYQGQGYSPWGPPGQEGNTPPEYQDLSDITG---K 354

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR-----------LTEVLGRSAD 377
            ++ +E  N  +N K   +  +  ++  +S+ + V+              +   + +   
Sbjct: 355 YNESQEIKNVALNEKKSTSEKEPARIVGVSLGIFVDGVWNFVYDEKGDFVIENGMRKREY 414

Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437
           +      +  I  ++ ++      RGD+IT+ ++ F     F     +  F     ++F 
Sbjct: 415 KPMALEEIKNIEDVLQSSFEYKPERGDSITVRNISFDRMNEFRKID-ENYFASERFKYFL 473

Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497
            + + +  L+      F           I    +     +               LM   
Sbjct: 474 FIASVIFSLLILAFTIFF---------AISRELERRRRLREEELAKQAHLRRQQALMDGG 524

Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
           +                LQ+                +     E  AK++R W 
Sbjct: 525 DDIGVDDVVGGIREGDELQNNAEL------------LAREKPEDVAKLIRTWL 565


>gi|195941355|ref|ZP_03086737.1| flagellar MS-ring protein [Borrelia burgdorferi 80a]
 gi|224533205|ref|ZP_03673805.1| flagellar M-ring protein FliF [Borrelia burgdorferi WI91-23]
 gi|226320592|ref|ZP_03796152.1| flagellar M-ring protein FliF [Borrelia burgdorferi 29805]
 gi|224511932|gb|EEF82333.1| flagellar M-ring protein FliF [Borrelia burgdorferi WI91-23]
 gi|226234011|gb|EEH32732.1| flagellar M-ring protein FliF [Borrelia burgdorferi 29805]
 gi|312149702|gb|ADQ29773.1| flagellar M-ring protein FliF [Borrelia burgdorferi N40]
          Length = 569

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 94/589 (15%), Positives = 193/589 (32%), Gaps = 73/589 (12%)

Query: 7   LLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD--- 59
              FF S           + + L  +I   I+  +    F        L+  +E+ D   
Sbjct: 5   FTNFFVSAKGIFKKASTVQKIALGLIIFFVILALVFLIGFSTKSQSIALF-GVEIKDQYL 63

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
           ++RIS  L   N+ + +S +G        +  K R  L  + L     +        ++ 
Sbjct: 64  LDRISQRLDRENVKYFLSSDGRIYLDDEKLAKKMRAILVREELVPVHMDPWA--LFDIDR 121

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           + +T F + I   R++   + + I ++  + A  V++VMP+   F++      ASV I  
Sbjct: 122 WTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKESQEPVKASVRITP 181

Query: 180 INPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKS 230
              S      K  E +  L+  A+  L+  ++ ++D++G +L            ++  K 
Sbjct: 182 RPGSDIITNRKKVEGLVKLIQYAIEGLESDNIAIVDNSGTILNDFSNLDGIDRIDLAEKE 241

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP------DSK 283
             +    +  +   I+ AL+  L VD F  + V  +L+   +      Y P      D K
Sbjct: 242 RKLKLKYEAMLRSEIDSALSKVLSVDRFMIARVNVKLDTSKETTESKEYAPIELQSQDPK 301

Query: 284 V-----------ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332
                         S +  K   + +   P      E N P        +       ++ 
Sbjct: 302 ASYNTRKVSDSTIISSQTQKKEYQGQGYSPWGPPGQEGNTPPEYQDLSDITG---KYNES 358

Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR-----------LTEVLGRSADQGKI 381
           +E  N  +N K   +  +  ++  +S+ + V+              +   + +   +   
Sbjct: 359 QEIKNVALNEKKSTSEKEPARIVGVSLGIFVDGIWNFVYDEKGDFVIENGMRKREYKPMA 418

Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441
              +  I  ++ ++      RGD+IT+ ++ F     F     +  F     ++F  + +
Sbjct: 419 LEEIKNIEDVLQSSFEYKPERGDSITVRNISFDRMNEFREID-ENYFASERFKYFLFIAS 477

Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501
            +  L+  +   F           I    +     +               LM   +   
Sbjct: 478 IVFSLLILVFTIFF---------AISRELERRRRLREEELAKQAHLRRQQALMDGGDDIG 528

Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
                        LQS                +     E  AK++R W 
Sbjct: 529 VDDVVGGIREGDELQSNAEL------------LAREKPEDVAKLIRTWL 565


>gi|323174686|gb|EFZ60306.1| flagellar M-ring protein domain protein [Escherichia coli LT-68]
          Length = 173

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 56/165 (33%), Positives = 88/165 (53%), Gaps = 4/165 (2%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           + +         LI+A    V +M+  A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 13  WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 71  NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
             RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV
Sbjct: 129 YQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASV 173


>gi|219684584|ref|ZP_03539527.1| flagellar M-ring protein FliF [Borrelia garinii PBr]
 gi|219671946|gb|EED29000.1| flagellar M-ring protein FliF [Borrelia garinii PBr]
          Length = 569

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 93/593 (15%), Positives = 195/593 (32%), Gaps = 73/593 (12%)

Query: 3   ILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           + +    FF S           + + L  +I   I+ F+    F        L+  +E+ 
Sbjct: 1   MSNFFTNFFVSAKGIFKKASTVQKIALGLIIFFVILAFVFLIGFSTKSQSIALF-GVEIK 59

Query: 59  D---VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115
           D   ++RIS  L   N+ + +S +G        +  K R  L  + L     +       
Sbjct: 60  DQYLLDRISQRLDRENVKYFLSSDGRIYLDDEKLAKKMRAILVREELVPVHMDPWA--LF 117

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
            ++ + +T F + I   R++   + + I ++  + A  V++VMP+   F++      ASV
Sbjct: 118 DIDRWTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKEAQEPVKASV 177

Query: 176 MIRAINPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NI 226
            I     S      K  E +  L+  A+  L+  ++ ++D++G +L            ++
Sbjct: 178 RITPRPGSDIITNRKKVEGLVKLIQYAIEGLESDNIAIVDNSGTILNDFSNLDGIDRIDL 237

Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP----- 280
             K   +    +  +   I+ AL+  L +D F  + V  +L+   +      Y P     
Sbjct: 238 AEKERKLKLKYEAMLRGEIDSALSKVLSIDRFMIARVNVKLDTSKETTESKEYAPIELQS 297

Query: 281 -DSKV-----------ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
            D K              S +  K   + +   P      E N P        +      
Sbjct: 298 QDPKASYNTRKVSDSTIISSQTQKKEYQGQGYSPWGPPGQEGNTPPEYQDLSDITG---K 354

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR-----------LTEVLGRSAD 377
            ++ +E  N  +N K   +  +  ++  +S+ + V+              +   + +   
Sbjct: 355 YNESQEIKNVALNEKKSTSEKEPARIVGVSLGIFVDGIWNFVYDEKGDFVIENGMRKREY 414

Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437
           +      +  I  ++ ++      RGD+IT+ ++ F     F     +  F     ++F 
Sbjct: 415 KPMALEEIKNIEDVLQSSFEYKPERGDSITVRNISFDRMNEFRKID-ENYFASERFKYFL 473

Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497
            + + +  L+      F           I    +     +               LM   
Sbjct: 474 FIASVMFSLLILAFTIFF---------AISRELERRRRLREEELAKQAHLRRQQALMDGG 524

Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
           +                LQ+                +     E  AK++R W 
Sbjct: 525 DDIGVDDVVGGIREGDELQNNAEL------------LAREKPEDVAKLIRTWL 565


>gi|15594636|ref|NP_212425.1| flagellar MS-ring protein [Borrelia burgdorferi B31]
 gi|216264746|ref|ZP_03436738.1| flagellar M-ring protein FliF [Borrelia burgdorferi 156a]
 gi|218249820|ref|YP_002374814.1| flagellar M-ring protein FliF [Borrelia burgdorferi ZS7]
 gi|221217640|ref|ZP_03589108.1| flagellar M-ring protein FliF [Borrelia burgdorferi 72a]
 gi|223888733|ref|ZP_03623324.1| flagellar M-ring protein FliF [Borrelia burgdorferi 64b]
 gi|224533718|ref|ZP_03674306.1| flagellar M-ring protein FliF [Borrelia burgdorferi CA-11.2a]
 gi|225549084|ref|ZP_03770059.1| flagellar M-ring protein FliF [Borrelia burgdorferi 94a]
 gi|225550193|ref|ZP_03771153.1| flagellar M-ring protein FliF [Borrelia burgdorferi 118a]
 gi|226321609|ref|ZP_03797135.1| flagellar M-ring protein FliF [Borrelia burgdorferi Bol26]
 gi|3915695|sp|Q44912|FLIF_BORBU RecName: Full=Flagellar M-ring protein
 gi|1165275|gb|AAA85614.1| FliF [Borrelia burgdorferi]
 gi|1196318|gb|AAB51410.1| flagellar basal body rod protein [Borrelia burgdorferi]
 gi|2688175|gb|AAC66657.1| flagellar basal-body rod protein (fliF) [Borrelia burgdorferi B31]
 gi|215981219|gb|EEC22026.1| flagellar M-ring protein FliF [Borrelia burgdorferi 156a]
 gi|218165008|gb|ACK75069.1| flagellar M-ring protein FliF [Borrelia burgdorferi ZS7]
 gi|221192317|gb|EEE18536.1| flagellar M-ring protein FliF [Borrelia burgdorferi 72a]
 gi|223885549|gb|EEF56648.1| flagellar M-ring protein FliF [Borrelia burgdorferi 64b]
 gi|224513011|gb|EEF83374.1| flagellar M-ring protein FliF [Borrelia burgdorferi CA-11.2a]
 gi|225369305|gb|EEG98758.1| flagellar M-ring protein FliF [Borrelia burgdorferi 118a]
 gi|225370310|gb|EEG99748.1| flagellar M-ring protein FliF [Borrelia burgdorferi 94a]
 gi|226232798|gb|EEH31551.1| flagellar M-ring protein FliF [Borrelia burgdorferi Bol26]
 gi|312147990|gb|ADQ30649.1| flagellar M-ring protein FliF [Borrelia burgdorferi JD1]
          Length = 569

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 94/589 (15%), Positives = 193/589 (32%), Gaps = 73/589 (12%)

Query: 7   LLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD--- 59
              FF S           + + L  +I   I+  +    F        L+  +E+ D   
Sbjct: 5   FTNFFVSAKGIFKKASTVQKIALGLIIFFVILALVFLIGFSTKSQSIALF-GVEIKDQYL 63

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
           ++RIS  L   N+ + +S +G        +  K R  L  + L     +        ++ 
Sbjct: 64  LDRISQRLDRENVKYFLSSDGRIYLDDEKLAKKMRAILVREELVPVHMDPWA--LFDIDR 121

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           + +T F + I   R++   + + I ++  + A  V++VMP+   F++      ASV I  
Sbjct: 122 WTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKESQEPVKASVRITP 181

Query: 180 INPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKS 230
              S      K  E +  L+  A+  L+  ++ ++D++G +L            ++  K 
Sbjct: 182 RPGSDIITNRKKVEGLVKLIQYAIEGLESDNIAIVDNSGTILNDFSNLDGIDRIDLAEKE 241

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP------DSK 283
             +    +  +   I+ AL+  L VD F  + V  +L+   +      Y P      D K
Sbjct: 242 RKLKLKYEAMLRGEIDSALSKVLSVDRFMIARVNVKLDTSKETTESKEYAPIELQSQDPK 301

Query: 284 V-----------ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332
                         S +  K   + +   P      E N P        +       ++ 
Sbjct: 302 ASYNTRKVSDSTIISSQTQKKEYQGQGYSPWGPPGQEGNTPPEYQDLSDITG---KYNES 358

Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR-----------LTEVLGRSADQGKI 381
           +E  N  +N K   +  +  ++  +S+ + V+              +   + +   +   
Sbjct: 359 QEIKNVALNEKKSTSEKEPARIVGVSLGIFVDGIWNFVYDEKGDFVIENGMRKREYKPMA 418

Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441
              +  I  ++ ++      RGD+IT+ ++ F     F     +  F     ++F  + +
Sbjct: 419 LEEIKNIEDVLQSSFEYKPERGDSITVRNISFDRMNEFREID-ENYFASERFKYFLFIAS 477

Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501
            +  L+  +   F           I    +     +               LM   +   
Sbjct: 478 IVFSLLILVFTIFF---------AISRELERRRRLREEELAKQAHLRRQQALMDGGDDIG 528

Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
                        LQS                +     E  AK++R W 
Sbjct: 529 VDDVVGGIREGDELQSNAEL------------LAREKPEDVAKLIRTWL 565


>gi|225552378|ref|ZP_03773318.1| flagellar M-ring protein FliF [Borrelia sp. SV1]
 gi|225371376|gb|EEH00806.1| flagellar M-ring protein FliF [Borrelia sp. SV1]
          Length = 569

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 94/589 (15%), Positives = 192/589 (32%), Gaps = 73/589 (12%)

Query: 7   LLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD--- 59
              FF S           + + L  +I   I+  +    F        L+  +E+ D   
Sbjct: 5   FTNFFVSAKGIFKKASTVQKIALGLIIFFVILALVFLIGFSTKSQSIALF-GVEIKDQYL 63

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
           ++RIS  L   N+ + +S +G        +  K R  L  + L     +        ++ 
Sbjct: 64  LDRISQRLDRENVKYFLSSDGRIYLDDEKLAKKMRAILVREELVPVHMDPWA--LFDIDR 121

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           + +T F + I   R++   + + I ++  + A  V++VMP+   F++      ASV I  
Sbjct: 122 WTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKESQEPVKASVRITP 181

Query: 180 INPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKS 230
              S      K  E +  L+  A+  L+  ++ ++D+ G +L            ++  K 
Sbjct: 182 RPGSDIITNRKKVEGLVKLIQYAIEGLESDNIAIVDNRGTILNDFSNLDGIDRIDLAEKE 241

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP------DSK 283
             +    +  +   I+ AL+  L VD F  + V  +L+   +      Y P      D K
Sbjct: 242 RKLKLKYEAMLRGEIDSALSKVLSVDRFMIARVNVKLDTSKETTESKEYAPIELQSQDPK 301

Query: 284 V-----------ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332
                         S +  K   + +   P      E N P        +       ++ 
Sbjct: 302 ASYNTRKVSDSTIISSQTQKKEYQGQGYSPWGPPGQEGNTPPEYQDLSDITG---KYNES 358

Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR-----------LTEVLGRSADQGKI 381
           +E  N  +N K   +  +  ++  +S+ + V+              +   + +   +   
Sbjct: 359 QEIKNVALNEKKSTSEKEPARIVGVSLGIFVDGIWNFVYDEKGDFVIENGMRKREYKPMA 418

Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441
              +  I  ++ ++      RGD+IT+ ++ F     F     +  F     ++F  + +
Sbjct: 419 LEEIKNIEDVLQSSFEYKPERGDSITVRNISFDRMNEFREID-ENYFASERFKYFLFIAS 477

Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501
            +  L+  +   F           I    +     +               LM   +   
Sbjct: 478 IVFSLLILVFTIFF---------AISRELERRRRLREEELAKQAHLRRQQALMDGGDDIG 528

Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
                        LQS                +     E  AK++R W 
Sbjct: 529 VDDVVGGIREGDELQSNAEL------------LAREKPEDVAKLIRTWL 565


>gi|258511371|ref|YP_003184805.1| flagellar M-ring protein FliF [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257478097|gb|ACV58416.1| flagellar M-ring protein FliF [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 507

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 85/398 (21%), Positives = 165/398 (41%), Gaps = 27/398 (6%)

Query: 44  NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP 103
             PHY  +   L+   + ++   L    I   I   G+++ VP+    +ARI LA  GLP
Sbjct: 46  TRPHYVTIMEGLDDKSLGQVQQELDTLKIPNEIQ--GTAVLVPARYADEARIQLAMAGLP 103

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
            S  ++         S G T     +  + AL+  ++ TI  I+G+ +A+VHIVMP    
Sbjct: 104 QSGYDA---YSGVTTSLGETQDEFNLQVLNALQQSLSTTISDINGVESAQVHIVMPQQQL 160

Query: 164 FR-KIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN 220
           F  +      ASV +         SA+   I+ LVA +VP L +G+VTV+D  G +L+++
Sbjct: 161 FVTQPTTDAKASVFVDLGPGVQLSSAQVYGIQQLVAHSVPGLTVGNVTVVDQYGNVLSSD 220

Query: 221 EME------RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
             +             L++ + ++++++  +   L   +G +N    V A +  +  Q  
Sbjct: 221 VAQGGSSSAVGAASSELAMREKLENDLQQTLISGLQQIVGAENAVVVVHANVTFNQTQTT 280

Query: 275 EIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQ--NMPHVSDRKVPLPRSLENTDKK 332
                           S++ Q+S++S         Q  + P+++        ++ N+   
Sbjct: 281 THTLINAPGSNTGFITSQEVQKSQSSSGSPGGAAGQAGSNPNLNSTYAAAGGAVTNSTTS 340

Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV 392
              +NY  + ++  TT D  ++   S+ V++N          S D+    +  A+I   V
Sbjct: 341 NTITNYAYSYQNQQTTVDPMQVLGYSVGVLLN----------SNDKNITPAVEAQIRNFV 390

Query: 393 SAATGINSRRGD-TITITSMDFLENQLFNSGTVQVSFM 429
            +  G    +G   ++++++ F                
Sbjct: 391 QSVLGTTPSQGKNVVSVSAVPFANPMQAVPAAPGARTW 428


>gi|218288294|ref|ZP_03492593.1| flagellar M-ring protein FliF [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218241653|gb|EED08826.1| flagellar M-ring protein FliF [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 507

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 85/398 (21%), Positives = 165/398 (41%), Gaps = 27/398 (6%)

Query: 44  NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP 103
             PHY  +   L+   + ++   L    I   I   G+++ VP+    +ARI LA  GLP
Sbjct: 46  TRPHYVTIMEGLDDKSLGQVQQELDTLKIPNEIQ--GTAVLVPARYADEARIQLAMAGLP 103

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
            S  ++   +     S G T     +  + AL+  ++ TI  I+G+ +A+VHIVMP    
Sbjct: 104 QSGYDAYSGI---TTSLGETQDEFNLQVLNALQQSLSSTISDINGVESAQVHIVMPQQQL 160

Query: 164 FR-KIGARPTASVMIRAINPSVYKSAE--AIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN 220
           F  +      ASV +         SA+   I+ LVA +VP L +G+VTV+D  G +L+++
Sbjct: 161 FVTQPTTDAKASVFVDLGPGVQLSSAQVYGIQQLVAHSVPGLTVGNVTVVDQYGNVLSSD 220

Query: 221 EME------RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
             +             L++ + ++++++  +   L   +G +N    V A +  +  Q  
Sbjct: 221 MAQGGSSSAVGAASSELAMREKLENDLQQTLISGLQQIVGAENAVVVVHANVTFNQTQTT 280

Query: 275 EIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQ--NMPHVSDRKVPLPRSLENTDKK 332
                           S++ Q+S++S         Q  + P+++         + N+   
Sbjct: 281 THTLINAPGSNTGFITSQEVQKSQSSSGSPGGAAGQAGSNPNLNSTYAAAGGGVTNSTTS 340

Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV 392
              +NY  + ++  TT D  ++   S+ V++N          S D+    +  A+I   V
Sbjct: 341 NTITNYAYSYQNQQTTVDPMQVLGYSVGVLLN----------SNDKNITPAVEAQIRNFV 390

Query: 393 SAATGINSRRGD-TITITSMDFLENQLFNSGTVQVSFM 429
            +  G    +G   ++++++ F                
Sbjct: 391 LSVLGTTPSQGKNVVSVSAVPFANPMQAVPAAPGARTW 428


>gi|325473786|gb|EGC76974.1| FliF protein [Treponema denticola F0402]
          Length = 567

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 112/595 (18%), Positives = 223/595 (37%), Gaps = 77/595 (12%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            +  +    +   T L +    I+  VI++ ++L +    + + P    +   + ++DV+
Sbjct: 7   NLKTKFGTLWGKWTKLQKG---IIIGVIVLALVLVVVLGRWSSKPTSVPVI-DMAITDVD 62

Query: 62  ---RISVALSEANIDFRISDNGSSISV-PSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
              RI + ++E N+   IS +G  ISV   +   + R  L  + L   +++     F  V
Sbjct: 63  LRDRIILRINEENVKTTISSDG-IISVADEATARRMRTILLREDLIPKNTSPWA--FFDV 119

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
             +  T F +EI   RA+  E+ R ++++  I  A V + +P+   F       TA+V+I
Sbjct: 120 ERYSRTDFEREIDVRRAITEEVKRHLKALDDIDDANVVVRIPEKALFESEQLPATATVVI 179

Query: 178 RAINPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-----ILG 228
                S      K  E I+ ++  AVP L   D+T+ D++G  L   E+ ++     ++ 
Sbjct: 180 TPAPGSDISTNRKKIEGIQKMLRLAVPGLKNEDITISDASGIPLNDFEIMKDADRLTLIE 239

Query: 229 KSLSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNM-----DTQQIR-------- 274
           K    +  ++ +   NI   L    G D  R   V  +++M     DT +IR        
Sbjct: 240 KQQKFIAKLERQYGANILTPLQKIYGEDRVRDINVKIDMDMSERSADTTEIRPTVIKEDN 299

Query: 275 -EIVYDPDSKVERSIRLSKDA----QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT 329
            E  YD DS+V +S+ +S +            P+  +  E   P        L      T
Sbjct: 300 PETSYD-DSQVVQSVTVSSENATTVWEGSGINPQGPMGTEGQTPPSYQDTRNLVGRSTQT 358

Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG-----------RSADQ 378
             KE   N+ +++  I       K+ R +++V ++     +                  +
Sbjct: 359 ITKE---NHLVSSSQIKEVFLP-KMGRRTVSVNIDGVWEKKKDVNGKYIIKNGVIEREYK 414

Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFAT 438
                 + +  KI+  A G ++ R D++++ ++       F     +  +   L R    
Sbjct: 415 PLSAEEIKQAEKIIKDAIGFDASRKDSVSVVNVKVDRTSQFELEDKE--YFKALQRQT-- 470

Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498
               +  L    +   L    L R+ + +  ++     +         + +    M  D 
Sbjct: 471 ----IFLLSLAGIALILLFFILYRIISREIERRK----RLREEELLRQAQLERERMLYDQ 522

Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
              D+         R  + + N+           +M   + E  A ++R W   E
Sbjct: 523 QMADADVSMTVEERRRQELQENAI----------NMAREHPEDVALLIRTWLMEE 567


>gi|323186389|gb|EFZ71738.1| flagellar M-ring protein domain protein [Escherichia coli 1357]
          Length = 173

 Score =  193 bits (490), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 56/165 (33%), Positives = 87/165 (52%), Gaps = 4/165 (2%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           + +         LI+A    V +M+  A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 13  WLNRLRANPKIPLIVAGSAAVAVMV--ALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQM 70

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 71  NIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 128

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
             RALEGE++RTI +I  +  ARVH+ MP    F +    P+ASV
Sbjct: 129 YQRALEGELSRTIATIGPVKGARVHLAMPKPSLFVREQKSPSASV 173


>gi|167770218|ref|ZP_02442271.1| hypothetical protein ANACOL_01561 [Anaerotruncus colihominis DSM
           17241]
 gi|167667540|gb|EDS11670.1| hypothetical protein ANACOL_01561 [Anaerotruncus colihominis DSM
           17241]
          Length = 530

 Score =  192 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 98/558 (17%), Positives = 197/558 (35%), Gaps = 49/558 (8%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHY-DNLYVKLEVSDVNRIS 64
           ++  F+   T L R + +I  S     +++       +N P     L+  +   +  ++ 
Sbjct: 11  KVKTFW---TGLPRKKKIIFTSSAAGIVVIAAVVALILNRPSGNQVLFPDMTREESQQVY 67

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L +  +   I+ +G  + VP+     A   +AAQG P S  N  Y+ F   + +  + 
Sbjct: 68  AKLQDMGVQAEINRDGQVV-VPTEDWDNAIFEMAAQGYPKSEPN--YDFFLSNSGWTKSE 124

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF---RKIGARPTASVMIRAIN 181
           F Q        E  + + +    GI +A V   +P+   +   +      TA++ I+   
Sbjct: 125 FEQRQVLKMQAEDRMRQILMGQDGIESADVSFSIPETSDYIWDQNNKEESTAAITIKMRK 184

Query: 182 P--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDS-TGKLLTANEMERNI--LGKSLSIVQA 236
                 +  +A+++L A ++PNL   +V V+D+ TG  + A + E       K L   + 
Sbjct: 185 GAELSPERVQAVKNLAAYSIPNLTADNVVVVDAATGVQMEAADDESASMFSDKRLEFERQ 244

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           I   IE NI + L+   GVD   +    EL+ D  +       P+   +  +   ++   
Sbjct: 245 IARGIEDNIIRILSPRYGVDGVTAVARVELDYDKMKTETRQLTPEDTGKGVMTHFEEQFS 304

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
                    +  E+N   V      +      T       +Y+I             L+ 
Sbjct: 305 QNGQVAAEGLVGEENNTDVPKYPNQVGAGDGTTSDYSNSIDYDIGYVLTQIEKGEPILKS 364

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
            ++ VVVN     +                E+  ++S +  I       I++T++D+ E 
Sbjct: 365 ATVGVVVNDSAFDDRKK------------EELTDLISKSVNIQPE---NISVTNLDYPEP 409

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476
           +   +G          +     +    + L+  L+   L L   R+ + +  A++  +  
Sbjct: 410 ETQQTGGAGEGDGAAGNSILPIIGVGALLLLLILIPIILLLLRRRKKNKVHAAEQALIDA 469

Query: 477 KSILSPPPISSAVTTGLM-PNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
           +               LM  N+ +A  +  +D                       +    
Sbjct: 470 EKERQAQMEREIAEHKLMLQNEALASKNVKEDAIMQE------------------VRTFA 511

Query: 536 EINEERFAKILRKWARSE 553
           E N E  A ++    R +
Sbjct: 512 EQNPEITANLISSMLRED 529


>gi|187918165|ref|YP_001883728.1| flagellar MS-ring protein [Borrelia hermsii DAH]
 gi|119861013|gb|AAX16808.1| flagellar M-ring protein FliF [Borrelia hermsii DAH]
          Length = 568

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 97/589 (16%), Positives = 206/589 (34%), Gaps = 74/589 (12%)

Query: 7   LLQFF----KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD--- 59
           + +FF    KS       + +    + L  I+  +    F        L+  + + D   
Sbjct: 5   ITKFFASVNKSFKKASIVQRVAFGVIFLFIILALIFLVGFSTRKQGIALF-GVGIKDQYL 63

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
           +++I   L   N+ + I+ +G       +   K R  L  + L     +  + LFD ++ 
Sbjct: 64  LDKIVQRLDRENVGYTITVDGKIYLSDENTSKKMRAILVREELVPVHMDP-WSLFD-IDR 121

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           + +T F + +   R++   + + I ++  + A  +++VMP+   F++      ASV I  
Sbjct: 122 WTITDFERNVNLRRSITRAVEQHIVALDDVDAVSINLVMPEKALFKESQEAVKASVRITP 181

Query: 180 INPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKS 230
              S      K  E +  L+  A+  L+  ++ ++D+ G +L            ++  K 
Sbjct: 182 KPGSDIVTNRKKVEGLVKLIQYAIEGLESDNIAIVDNKGTILNDFSNVDGIDRIDLAEKE 241

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP------DSK 283
             +    +  ++  I+ AL+  L V  F  + V   L+   Q      Y P      D K
Sbjct: 242 RKLKLKYESMLKDEIDSALSKVLSVGRFMIARVNVTLDTSRQTTESKEYAPIEIEPQDPK 301

Query: 284 V-----------ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332
           V             S ++ K     +   P      E N P        L   +  +++ 
Sbjct: 302 VSYNTRKVSDSTLISSQVHKREYEGQGYSPWGPPGQEGNTPPEYRD---LSDIIGKSNEF 358

Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR-----------LTEVLGRSADQGKI 381
           +E  N  +N K   +  +  ++  +S+ + ++              +   + +   +   
Sbjct: 359 KEIKNVALNEKKSLSEKEPARVAGISLGIFIDGVWDFVYDESGKFVIENGMRKREYKPIS 418

Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441
           D  L  I  ++ ++      RGD+IT+ ++ F     F             S  F  V+ 
Sbjct: 419 DEALKNITDVLQSSFEYKPERGDSITVRNIAFDRVNEFRKIDEAY----FASEKFNFVVF 474

Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501
           A+  +   L++ F     +          + +   +               LM +D+I +
Sbjct: 475 AVSLIFAFLILIFTIFFIV------SRELERKRRLREEEFARQAHLRRQQALMDSDDIGV 528

Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
           D     +         + N+ +          +     E  AK++R W 
Sbjct: 529 DDVVGGLREEDE---LQSNAEL----------LAREKPEDVAKLIRTWI 564


>gi|42526724|ref|NP_971822.1| flagellar MS-ring protein [Treponema denticola ATCC 35405]
 gi|41817039|gb|AAS11733.1| flagellar M-ring protein FliF [Treponema denticola ATCC 35405]
          Length = 567

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 111/595 (18%), Positives = 226/595 (37%), Gaps = 77/595 (12%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            +  +    +   T L +    I+  VI++ ++L +    + + P    +   + ++DV+
Sbjct: 7   NLKTKFGTLWGKWTKLQKG---IIIGVIVLALVLVVVLGRWSSKPTSVAVI-DMAITDVD 62

Query: 62  ---RISVALSEANIDFRISDNGSSISV-PSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
              RI + ++E N+   IS +G  ISV   +   + R  L  + L   +++     F  V
Sbjct: 63  LRDRIILRINEENVKTTISSDG-IISVADEATARRMRTILLREDLIPKNTSPWA--FFDV 119

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
             +  T F +EI   RA+  E+ R ++++  I  A V + +P+   F       TA+V+I
Sbjct: 120 ERYSRTDFEREIDVRRAITEEVKRHLKALDDIDDANVVVRIPEKALFESEQLPATATVVI 179

Query: 178 RAINPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-----ILG 228
                S      K  E I+ ++  AVP L   D+T+ D++G  L   E+ ++     ++ 
Sbjct: 180 TPAPGSDISTNRKKIEGIQKMLRLAVPGLKNEDITISDASGIPLNDFEIMKDADRLTLIE 239

Query: 229 KSLSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNM-----DTQQIR-------- 274
           K    +  ++ +   NI   L    G D  R   V  +++M     DT +IR        
Sbjct: 240 KQQKFIAKLERQYGANILTPLQKIYGEDRVRDINVKIDMDMSERSADTTEIRPTVIKEDN 299

Query: 275 -EIVYDPDSKVERSIRLSKDA----QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT 329
            E  YD DS+V +S+ +S +            P+     E   P        L      T
Sbjct: 300 PETSYD-DSQVVQSVTVSSENATTVWEGSGINPQGPTGTEGQTPPSYQDTRNLVGRSTQT 358

Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG-----------RSADQ 378
             KE   N+ +++  I       K+ R +++V ++     +                  +
Sbjct: 359 ITKE---NHLVSSSQIKEVFLP-KMGRRTVSVNIDGVWEKKKDVNGKYIIKNGVIEREYK 414

Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFAT 438
                 + +  KI+  A G ++ R D++++ ++       F     +  +   L R    
Sbjct: 415 PLSAEEIKQAEKIIKDAIGFDASRKDSVSVVNVKVDRTSQFELEDKE--YFKALQRQTIF 472

Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498
           +++  +  +  +L+ F+    +        +++ E   +         + +    M  D 
Sbjct: 473 LLS--LAGIALILIFFILYRII--------SREIERRKRLREEELLRQAQLERERMLYDQ 522

Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
              D+         R  + + N+           +M   + E  A ++R W   E
Sbjct: 523 QMADADVSMTVEERRRQELQENAI----------NMAREHPEDVALLIRTWLMEE 567


>gi|168334480|ref|ZP_02692651.1| flagellar M-ring protein FliF [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 533

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 85/518 (16%), Positives = 175/518 (33%), Gaps = 41/518 (7%)

Query: 44  NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP 103
           +SP    LY  L++  +++I   L   NI + +  +G +I V    +  A+I L  + +P
Sbjct: 46  SSPQTAILYQNLDMEAISQIDEVLGANNITYELI-DGRTIQVNEEDLNTAKIILTRENVP 104

Query: 104 SSSSNSGYELFDK-VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM- 161
                  Y  +D   NS   T   +    +   + ++   +  + GI  A V + +P+  
Sbjct: 105 RG----DYTFYDAITNSMSTTEAEKRTKLIYLKQVDLENILMGMEGIAEATVQLNVPEEK 160

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TAN 220
            SF       +ASV++           E I  L++ AV NL + ++T+LDS   +L + +
Sbjct: 161 NSFIASQMESSASVVLTLHRQISDNQIEGIARLLSNAVDNLKLENITILDSDSNVLFSGD 220

Query: 221 EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD- 279
           E          S+  + + +I   +   L+     D    +    L+ D  +  +  Y  
Sbjct: 221 EFGEMTASDQQSLKSSAEKDIVNKLTTLLSPIY--DEVAISPNLILDFDYFEQTKEEYTT 278

Query: 280 --PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSN 337
              DS+     + S+    +   Q   A  ++ N+  V    V       N +       
Sbjct: 279 PITDSQTGLVDQESRRNYEATNIQDGFAPGLDPNVEDV-PEYVAGNELSGNYEGGTSDII 337

Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG 397
           Y+ N        +   ++  + +V +N  +         +    D       K+ +  T 
Sbjct: 338 YKHNKTLSNEIKNIGTIDYNNSSVAINLTKYNVYDEALLEDTLPDDQTWAEFKLANDVTN 397

Query: 398 INSRRGDTITITSMDFLENQLFNSGTVQVSFMD--ILSRHFATVINALVFLVGTLLVTFL 455
           I      TI    M      +      +  F+D    +     VI  ++ L    ++  +
Sbjct: 398 ILVVEQATIDAIKMGAGLENVAVIAYEKPVFIDKEPFTLQTEDVIPYILLLALGAVIVVV 457

Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL 515
            +   + +  +    + E      ++ P                              + 
Sbjct: 458 MIRFRKPVEEVVTEDEFEFEDLLPVAGP-------------------------EEEEEDS 492

Query: 516 QSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
              I      ++  ++   I+   E  A +LR W   +
Sbjct: 493 LQDIELKEVIETKAKIDKFIDEKPEAVAGLLRNWLEED 530


>gi|119953090|ref|YP_945299.1| flagellar MS-ring protein [Borrelia turicatae 91E135]
 gi|119861861|gb|AAX17629.1| flagellar M-ring protein FliF [Borrelia turicatae 91E135]
          Length = 568

 Score =  191 bits (484), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 101/589 (17%), Positives = 203/589 (34%), Gaps = 74/589 (12%)

Query: 7   LLQFF----KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD--- 59
           + +FF    K        + +    + L  I+ F+    F        L+  + + D   
Sbjct: 5   ITKFFASVNKKFQKASMVQKVAFGVIALFIILAFIFLIGFSTKKQGVALF-GVGIKDQYL 63

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
           ++RI   L   ++++ I+ +G       +M  K R  L  + L     +  + LFD ++ 
Sbjct: 64  LDRIVQRLDRESVEYIITADGKIYLSDENMSKKMRAILVREELVPVHMDP-WSLFD-IDR 121

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           + +T F + +   R++   + + I ++  + A  +++VMP+   F++      ASV I  
Sbjct: 122 WTITDFERNVNLRRSITRAVEQHIVALDDVDAVSINLVMPEKALFKESQEAVKASVRITP 181

Query: 180 INPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKS 230
              S      K  E +  L+  A+  L+  ++ ++D+ G +L            ++  K 
Sbjct: 182 KPGSDIVTNRKKVEGLVKLIQYAIEGLESDNIAIVDNKGTVLNDFSNLDGIDRIDLAEKE 241

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP------DSK 283
             +    +  +   I+ AL+  L VD F  + V   L+   Q      Y P      D K
Sbjct: 242 RKLKLKYESMLRDEIDSALSKVLSVDRFMIARVNVTLDTSRQTTESKEYAPIEIEPQDPK 301

Query: 284 V-----------ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332
           V             S ++ K     +   P      E N P        L   +  +++ 
Sbjct: 302 VSYNTRKVSDSTLLSSQVHKREYEGQGYSPWGPPGQEGNTPPEYRD---LSDIIGKSNEF 358

Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR-----------LTEVLGRSADQGKI 381
           +E  N  +N K      +  ++  +S+ + ++              +   + +   +   
Sbjct: 359 KEIKNVALNEKKSLNEKEPARIAGISLGIFIDGVWDFVYDESGNFIIENGMRKREYKPIS 418

Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441
           D  L  I  ++ ++      RGD+I I ++ F     F          +       TV  
Sbjct: 419 DEALKNITDVLQSSFEYKPERGDSIAIRNVAFDRVNEFRKIDEDYFSTEKFKFLIFTVSI 478

Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501
               L+    V F+               +     +               LM +D+I +
Sbjct: 479 IFALLILIFTVFFIV----------SRELERRRRLREEEFSRQAHLRRQQALMDSDDIGV 528

Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
           D           ++   I      QS+  L  +     E  AK++R W 
Sbjct: 529 D-----------DVVGGIREEDELQSNAEL--LAREKPEDVAKLIRTWI 564


>gi|229826302|ref|ZP_04452371.1| hypothetical protein GCWU000182_01674 [Abiotrophia defectiva ATCC
           49176]
 gi|229789172|gb|EEP25286.1| hypothetical protein GCWU000182_01674 [Abiotrophia defectiva ATCC
           49176]
          Length = 536

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 93/571 (16%), Positives = 195/571 (34%), Gaps = 73/571 (12%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           + L+F+   + + R  ++ +   + + I+L     +FV  P    L    + S+  +I  
Sbjct: 14  RFLEFWNKYSPVQRILMIAVGVGVFLAIIL---VSYFVTRPVMTTLVKAEKTSETAKIKD 70

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L +  I + +S +  +ISV       A + LA   +PS   +   ELF   N F  T  
Sbjct: 71  LLDDNGISYELSSDALTISVDQKDYSNALLVLAKNDIPSIGMSID-ELF--NNGFSTTES 127

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM-GSFRKIGARPTASVMIRAINPSV 184
            +++      +  + + + ++  I  A V I  P    +        + SV++   +   
Sbjct: 128 EKKLKANIYKQDWLRQVLLNMDNIENAVVSITSPTTGNTLFAETKDTSVSVILTVSSDFK 187

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQAIQHEI 241
            ++A+ I +++A AV N     +T+ D +G LL     N++    +       + +    
Sbjct: 188 QENAKTIANILAGAVGNDSTKAITIADQSGNLLFNGADNDVFSGGINSISDYEKNVTGVK 247

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           +  I K L      D+ + A     +M+        Y P +  E+ ++    +  ++ S 
Sbjct: 248 KEEIYKLLVGLPAYDDAKVAANFIFDMNKISSVYTEYTPPTGAEQGLKSHDYSYEAQNSN 307

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE--RLSI 359
                       +     +         +    +++Y  N K   T      ++    SI
Sbjct: 308 ANG--GTPGTDANSETDYMVQSGGNAQGNVSINENDYLPNKKVTNTEAAMGAIKPNESSI 365

Query: 360 AVV----VNKGRLTEVLGRSADQGKIDSYL------------AEINKIVSAATGINSRRG 403
           A+     VN            +    D ++              +  +VS ATG+     
Sbjct: 366 AITLISYVNYNETEMKKNGRLEGTTFDEFMFANQAATELTVPENVITLVSRATGVPEE-- 423

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
                 ++  L             F       F T  N L+ ++  L+V  L     R L
Sbjct: 424 ------NIQIL-------AWQMPIFQPEEGGGFFTFTNILMIMLAVLIVALLIFVVFRGL 470

Query: 464 HNIDDAK-KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
             ++  + + E+  + +L+    + ++                             I   
Sbjct: 471 APVEVVELEPELSVEQLLATTKENQSLDD---------------------------IEFS 503

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSE 553
              ++   +   ++ N E  A++LR W   E
Sbjct: 504 DKSETRKMIEKFVDENPEATAQLLRNWLSDE 534


>gi|2105148|gb|AAB57899.1| FliF [Treponema denticola]
          Length = 567

 Score =  187 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 112/596 (18%), Positives = 226/596 (37%), Gaps = 79/596 (13%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            +  +    +   T L +    I+  VI++ ++L +    + + P    +   + ++DV+
Sbjct: 7   NLKTKFGTLWGKWTKLQKG---IIIGVIVLALVLVVVLGRWSSKPTSVAVI-DMAITDVD 62

Query: 62  ---RISVALSEANIDFRISDNGSSISVPSSMVGKARIH---LAAQGLPSSSSNSGYELFD 115
              RI + ++E N+   IS +G  ISV        R+    L    +P ++S      F 
Sbjct: 63  LRDRIILRINEGNVKTSISSDG-IISVADVEATARRMRTILLREDLIPKNTSPW---AFF 118

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
            V  +  T F +EI   RA+  E+ R ++++  I  A V + +P+   F       TA+V
Sbjct: 119 DVERYSRTDFEREIDVRRAITEEVKRHLKALDDIDDANVVVRIPEKALFESEQLPATATV 178

Query: 176 MIRAINPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-----I 226
           +I     S      K  E I+ ++  AVP L   D+T+ D++G  L   E+ ++     +
Sbjct: 179 VITPAPGSDISTNRKKIEGIQKMLRLAVPGLKNEDITISDASGIPLNDFEIMKDADRLTL 238

Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNM-----DTQQIR------ 274
           + K    +  ++ +   NI   L    G D  R   V  +++M     DT +IR      
Sbjct: 239 IEKQQKFIAKLERQYGANILTPLQKIYGEDRVRDINVKIDMDMSERSADTTEIRPTVIKE 298

Query: 275 ---EIVYDPDSKVERSIRLSKDAQRS---ETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
              E  YD DS+V +S+ +S +   +       P+     E   P        L      
Sbjct: 299 DNPETSYD-DSQVVQSVTVSSENATTVWEGRINPQGPTGTEGQTPPSYQDTRNLVGRSTQ 357

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG-----------RSAD 377
           T  KE   N+ +++  I       K+ R +++V ++     +                  
Sbjct: 358 TITKE---NHLVSSSQIKEVFLP-KMGRRTVSVNIDGVWEKKKDVNGKYINLNGVIEREY 413

Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437
           +      + +  KI+  A G ++ R D++++ ++       F     +  +   L R   
Sbjct: 414 KPLSAEEIKQAEKIIKDAIGFDASRKDSVSVVNVKVDRTSQFELEDKE--YFKALQRQTI 471

Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497
            +++  +  +  +L+ F+    +        +++ E   +         + +    M  D
Sbjct: 472 FLLS--LAGIALILIFFILYRII--------SREIERRKRLREEELLRQAQLERERMLYD 521

Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
               D+         R  + + N+           +M   + E  A ++R W   E
Sbjct: 522 QQMADADVSMTVEERRRQELQENAI----------NMAREHPEDVALLIRTWLMEE 567


>gi|254853083|ref|ZP_05242431.1| flagellar MS-ring protein [Listeria monocytogenes FSL R2-503]
 gi|258606431|gb|EEW19039.1| flagellar MS-ring protein [Listeria monocytogenes FSL R2-503]
          Length = 425

 Score =  186 bits (473), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 71/349 (20%), Positives = 152/349 (43%), Gaps = 20/349 (5%)

Query: 42  FVNSPHYDN-LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           ++N+P  +  LY  L  +   +++  L++  +D+ +  +G+ I V   +    R   A  
Sbjct: 33  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA----LEGEIARTIQSISGIVAARVHI 156
           G+P +  +    L    +S G +   +++         LE EI ++  +   I +A V +
Sbjct: 92  GIPYTGQDGNDILL--NSSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TIDSASVQL 147

Query: 157 VMPDMGS-FRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDST 213
            +P+  S F +   + TA+V ++  N      +    I+  V+AAVPN+   DV ++D+ 
Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207

Query: 214 GKLLTANEM----ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
             +++  +       +     + I  AI   ++ +I   L++   +DNFR      +N D
Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVSVNFD 267

Query: 270 TQQIREIVYDPDSKVERSIR-LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
             +     Y  D KV  + +  S D  +   +  ES      ++P+ +++      +   
Sbjct: 268 EIKQNTEHYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTY-T 326

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSAD 377
           ++K  E +NYE+++           L + ++ V V++  L +     A+
Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQNALNKNGVDMAE 374


>gi|125972986|ref|YP_001036896.1| flagellar M-ring protein FliF [Clostridium thermocellum ATCC 27405]
 gi|125713211|gb|ABN51703.1| flagellar M-ring protein FliF [Clostridium thermocellum ATCC 27405]
          Length = 517

 Score =  186 bits (473), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 96/564 (17%), Positives = 191/564 (33%), Gaps = 67/564 (11%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            +  Q+  F+K+     +TRIL+ + +++V + + +     +    Y  L    +   ++
Sbjct: 7   KMQQQVTDFWKNLDKSQKTRILVTSGILVVVLTIAIVM---LTRTTYVPLITVQDPDSIS 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I  AL E NI ++    G  I V S    +A   LA+ GL        +E    +    
Sbjct: 64  AIEEALKERNIKYK-HGEGRRILVDSKDKNEAEFALASAGLTEPGMT--FEDAWSLLKVS 120

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA-RPTASVMIRAI 180
            +   ++       +  +   ++    +  A + + +P+   F         A+V I   
Sbjct: 121 SSESDKKQLWQNFKKNSLIAKLKMFDNVKDADIELTIPEDTMFFTDSKSEAKAAVRITPK 180

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQAIQH 239
                +  E I  +VA+++  LD  +VTV+D+   +L  +     NI      +   I+ 
Sbjct: 181 GELTPEQVEGIVMVVASSIEGLDPKNVTVVDNNFNILNQDLSDGMNIPSSHYKLKLRIKE 240

Query: 240 EIEMNINKALAAFLGVDNF-RSAVVAELNMDTQQI-REIVYDP---DSKVERSIRLSKDA 294
           E+E NI    +      +F   AV   L++D     R+ +  P   D  V    R +++ 
Sbjct: 241 ELEKNIKNLYSGRSDSYDFISVAVNPVLDLDKVTKNRKEIEKPTGLDEAVVSEERKTEEL 300

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT-DKKEEQSNYEINTKSIATTHDNYK 353
                     A  ++ N         P+     ++ + K E  N        A       
Sbjct: 301 I---NGNQGGAPGMDANPGTGDVPTYPIDAGQNSSYESKSEIINRIFTETLTAEEKAIGT 357

Query: 354 LE----RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
           +      +++A       L        D    D ++ E  + +S ATGI       IT+ 
Sbjct: 358 MNFQESSMTVA-------LWYGNRVPDDSKLTDEFIEEFKQGLSNATGIPVG---KITVN 407

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
                          +   + +  R    + +   F +  +L+  L L  + R       
Sbjct: 408 --------KQKLAPQEEEIVPMSERIKQFIDDYGFFALLIILIIALMLSVMPR-----KK 454

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
           K  ++  +   +  P        L P                       IN     +   
Sbjct: 455 KSPQLAPELATAGGPNVDEAEEELPP-----------------------INFEEHSEIKK 491

Query: 530 RLLHMIEINEERFAKILRKWARSE 553
           ++ + ++   E  A++LR W   +
Sbjct: 492 QIENFVKQKPESVAQLLRNWLSED 515


>gi|203287751|ref|YP_002222766.1| flagellar M-ring protein [Borrelia recurrentis A1]
 gi|201084971|gb|ACH94545.1| flagellar M-ring protein [Borrelia recurrentis A1]
          Length = 568

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 97/589 (16%), Positives = 202/589 (34%), Gaps = 74/589 (12%)

Query: 7   LLQFFKSGTSLGRT----RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD--- 59
           + +FF S +   +     + +    + L  I+  +    F        L+  + + D   
Sbjct: 5   ITKFFASISKKIKKATMVQKVAFGVIALFIILSLVFLVSFSTRKQGIALF-GISIKDQYL 63

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
           +++I   L   N  + I+ +G       +M  + R  L  + L     +  + LFD ++ 
Sbjct: 64  LDKIVQRLDRENAKYTITADGRIYLSDENMSKRIRAILVREELIPMHMDP-WSLFD-IDR 121

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           + +T F + I   R++   + + I ++  + A  +++VMP+   F++      ASV I  
Sbjct: 122 WTITDFERNINLRRSITRAVEQHIVALDDVDAVSINLVMPEKALFKESQESVRASVRITP 181

Query: 180 INPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKS 230
              S      +  E +  L+  AV  L+  ++ ++D+ G +L            ++  K 
Sbjct: 182 KPGSDIATNRQKVEGLVKLIQYAVEGLEADNIVIVDNKGTILNDFSNLDGVDRIDLAEKE 241

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP------DSK 283
             +    +  +   I+ AL+  L  D F  + V   L+   Q      Y P      + K
Sbjct: 242 RKLKLKYESMLRDEIDFALSKVLSSDRFMIARVNVTLDTSKQTTESKEYAPIELEPQNPK 301

Query: 284 V-----------ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332
           V             S ++ K     +   P      E N P        +   +  +++ 
Sbjct: 302 VSYNTRKVSDSTLISSQVHKREYEGQGYSPWGPPGQEGNTPPEYGDMSDI---IGKSNEF 358

Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR-----------LTEVLGRSADQGKI 381
           +E  N  +N K   +  +  ++  +S+ + ++              +   + +   +   
Sbjct: 359 KEIKNVALNEKKSLSEKEPARVSGISLGIFIDGIWDFVYDESGNFVMENGMRKREYKPIS 418

Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441
           D  L  I  ++ ++      RGD+IT+ ++ F     F          +        V  
Sbjct: 419 DETLKSITDVLQSSFEYKPERGDSITVRNIIFDRASEFRKIDEDYFAGEKFKFLIFVVSI 478

Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501
            +  L+    V F+          I    +     +               LM  DNI +
Sbjct: 479 IIALLILIFTVFFI----------ISRELERRRRLREEEFARQAHLRRQQALMDGDNIGI 528

Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
           D           N+          QS+  +  +     E  AK++R W 
Sbjct: 529 D-----------NVVGGFREEDELQSNAEI--LAREKPEDVAKLIRTWI 564


>gi|256004783|ref|ZP_05429758.1| flagellar M-ring protein FliF [Clostridium thermocellum DSM 2360]
 gi|281417197|ref|ZP_06248217.1| flagellar M-ring protein FliF [Clostridium thermocellum JW20]
 gi|255991233|gb|EEU01340.1| flagellar M-ring protein FliF [Clostridium thermocellum DSM 2360]
 gi|281408599|gb|EFB38857.1| flagellar M-ring protein FliF [Clostridium thermocellum JW20]
 gi|316940778|gb|ADU74812.1| flagellar M-ring protein FliF [Clostridium thermocellum DSM 1313]
          Length = 517

 Score =  184 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 96/564 (17%), Positives = 191/564 (33%), Gaps = 67/564 (11%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            +  Q+  F+K+     +TRIL+ + +++V + + +     +    Y  L    +   ++
Sbjct: 7   KMQQQVTDFWKNLDKSQKTRILVTSGILVVVLTIAIVM---LTRTTYVPLITVEDPDSIS 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I  AL E NI ++    G  I V S    +A   LA+ GL        +E    +    
Sbjct: 64  AIEEALKERNIKYK-HGEGRRILVDSKDKNEAEFALASAGLTEPGMT--FEDAWSLLKVS 120

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA-RPTASVMIRAI 180
            +   ++       +  +   ++    +  A + + +P+   F         A+V I   
Sbjct: 121 SSESDKKQLWQNFKKNSLIAKLKMFDNVKDADIELTIPEDTMFFTDSKSEAKAAVRITPK 180

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQAIQH 239
                +  E I  +VA+++  LD  +VTV+D+   +L  +     NI      +   I+ 
Sbjct: 181 GELTPEQVEGIVMVVASSIEGLDPKNVTVVDNNFNILNQDLSDGMNIPSSHYKLKLRIKE 240

Query: 240 EIEMNINKALAAFLGVDNF-RSAVVAELNMDTQQI-REIVYDP---DSKVERSIRLSKDA 294
           E+E NI    +      +F   AV   L++D     R+ +  P   D  V    R +++ 
Sbjct: 241 ELEKNIKNLYSGRSDSYDFISVAVNPVLDLDKVTKNRKEIEKPTGLDEAVVSEERKTEEL 300

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT-DKKEEQSNYEINTKSIATTHDNYK 353
                     A  ++ N         P+     ++ + K E  N        A       
Sbjct: 301 I---NGNQGGAPGMDANPGTGDVPTYPIDAGQNSSYESKSEIINRIFTETLTAEEKAIGT 357

Query: 354 LE----RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
           +      +++A       L        D    D ++ E  + +S ATGI       IT+ 
Sbjct: 358 MNFQESSMTVA-------LWYGNRVPDDSKLTDEFIEEFKQGLSNATGIPVG---KITVN 407

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
                          +   + +  R    + +   F +  +L+  L L  + R       
Sbjct: 408 --------KQKLAPQEEEIVPMSERIKQFIDDYGFFALLIILIIALMLSVMPR-----KK 454

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
           K  ++  +   +  P        L P                       IN     +   
Sbjct: 455 KSPQLAPELATAGGPNVDEAEEELPP-----------------------INFEEHSEIKK 491

Query: 530 RLLHMIEINEERFAKILRKWARSE 553
           ++ + ++   E  A++LR W   +
Sbjct: 492 QIENFVKQKPESVAQLLRNWLSED 515


>gi|203284212|ref|YP_002221952.1| flagellar M-ring protein [Borrelia duttonii Ly]
 gi|201083655|gb|ACH93246.1| flagellar M-ring protein [Borrelia duttonii Ly]
          Length = 568

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 97/589 (16%), Positives = 203/589 (34%), Gaps = 74/589 (12%)

Query: 7   LLQFFKSGTSLGRT----RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD--- 59
           + +FF S +   +     + +    + L  I+  +    F        L+  + + D   
Sbjct: 5   ITKFFASISKKIKKATMVQKVAFGVIALFIILSLVFLVSFSTRKQGIALF-GISIKDQYL 63

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
           +++I   L   N  + I+ +G       +M  + R  L  + L     +  + LFD ++ 
Sbjct: 64  LDKIVQRLDRENAKYTITADGRIYLSDENMSKRIRAILVREELIPMHMDP-WSLFD-IDR 121

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           + +T F + I   R++   + + I ++  + A  +++VMP+   F++      ASV I  
Sbjct: 122 WTITDFERNINLRRSITRAVEQHIVALDDVDAVSINLVMPEKALFKESQESVRASVRITP 181

Query: 180 INPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKS 230
              S      +  E +  L+  AV  L+  ++ ++D+ G +L            ++  K 
Sbjct: 182 KPGSDIATNRQKVEGLVKLIQYAVEGLEADNIVIVDNKGTILNDFSNLDGVDRIDLAEKE 241

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP------DSK 283
             +    +  +   I+ AL+  L  D F  + V   L+   Q      Y P      D K
Sbjct: 242 RKLKLKYESMLRDEIDFALSKVLSSDRFMIARVNVTLDTSKQTTESKEYAPIELEPQDPK 301

Query: 284 V-----------ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332
           V             S ++ K     +   P      E N P        +   +  +++ 
Sbjct: 302 VSYNTRKVSDSTLISSQVHKREYEGQGYSPWGPPGQEGNTPPEYRDMSDI---IGKSNEF 358

Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR-----------LTEVLGRSADQGKI 381
           +E  N  +N K   +  +  ++  +S+ + ++              +   + +   +   
Sbjct: 359 KEIKNVALNEKKSLSEKEPARVSGISLGIFIDGIWDFVYDESGNFVMENGMRKREYKPIS 418

Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441
           D  L  I  ++ ++      RGD+IT+ ++ F  +  F          +        V  
Sbjct: 419 DETLKSITDVLQSSFEYKPERGDSITVRNIIFDRSSEFRKIDEDYFAGEKFKFLIFVVSI 478

Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501
            +  L+    V F+          I    +     +               LM  DNI +
Sbjct: 479 IIALLILIFTVFFI----------ISRELERRRRLREEEFARQAHLRRQQALMDGDNIGI 528

Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
           D           ++          QS+  +  +     E  AK++R W 
Sbjct: 529 D-----------DVVGGFREEDELQSNAEI--LAREKPEDVAKLIRTWI 564


>gi|238916746|ref|YP_002930263.1| flagellar M-ring protein FliF [Eubacterium eligens ATCC 27750]
 gi|238872106|gb|ACR71816.1| flagellar M-ring protein FliF [Eubacterium eligens ATCC 27750]
          Length = 536

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 103/578 (17%), Positives = 211/578 (36%), Gaps = 75/578 (12%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            I  +LL+ +K+ T   R + +I+ S ++V I   +   + ++ P Y  L    + S++N
Sbjct: 7   QIPARLLEIWKNWT---RNQKIIIVSAVVVFIAAVIVIAYVLSRPTYQELTKCEDYSEMN 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK-VNSF 120
            ++  L++    ++I  N  +++V    +  A++ +A+  +      SGY L D   +S 
Sbjct: 64  TVTTLLTDNGYTYQI--NNMTVNVKKQDLTNAKMLIASNDI----KPSGYSLDDALNSSL 117

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM-GSFRKIGARPTASVMIRA 179
             T   +     + LE + A  I S+ GI  A V + + D   SF       T +V +  
Sbjct: 118 TTTEADKNKKYAKYLETKFATDIASLDGIKKASVTVHLSDDTNSFYSTKKDTTVAVTVDT 177

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-----GKSLSIV 234
                  +AE+I   +A AV +     +T++D+TGK L         +        L   
Sbjct: 178 SKTVSDDAAESIAVFLATAVGSSTTNGITIIDTTGKTLFNGSDNSGSVSNISYSSKLKYK 237

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
             I+  +   +     +    ++   A+  +L+ DT       Y      E  +  +   
Sbjct: 238 SQIESTVAAGVKNTALSTSLFNDATVAINLDLDWDTVNKIATEYTAQEGREEGLYDTSYE 297

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
             S  +          +             +  ++    +Q  Y  N     T  +  K+
Sbjct: 298 LESTGNNGAGGTPGTTSNGEGGTTYDLTDGTSSSSTYTVKQYQYLPNQLVTTTNTEPGKI 357

Query: 355 ER----LSIA----VV-----------VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395
                 +S+     VV           ++     E   ++AD  ++    A+   ++S A
Sbjct: 358 VYDTSTMSVTLIKNVVYNEDDCKKLGYLDNMTWDEFKAQNADPVQVQVN-ADWMNMLSNA 416

Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455
           TGI++       IT + +     +++         +LSR    +  AL   +  +LV F+
Sbjct: 417 TGISTN-----NITVLAYNVPYFYDAAKTS-----VLSRASFWIQIALAVAILGILV-FI 465

Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL 515
            L + R L    + K+ E+  + +L+                              ++  
Sbjct: 466 VLRSARPLTV--EEKEPELSVEEMLAST--------------------------KENQPT 497

Query: 516 QSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
              I+     ++   +   ++ N E  A +LR W   +
Sbjct: 498 VDEIDLQEKSETRKAIEKFVDENPEAVALLLRNWLNDD 535


>gi|257140592|ref|ZP_05588854.1| flagellar MS-ring protein [Burkholderia thailandensis E264]
          Length = 592

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 52/141 (36%), Positives = 83/141 (58%), Gaps = 2/141 (1%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 78  WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 137

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++S++ + AARVH+ +P  
Sbjct: 138 LPKGGS-VGFELMD-NQKFGISQFAEQVNYQRALEGELQRTVESVNAVRAARVHLAIPKP 195

Query: 162 GSFRKIGARPTASVMIRAINP 182
             F +    P+ASV++  +  
Sbjct: 196 SVFVRDREAPSASVLVDLVPG 216


>gi|330982829|gb|EGH80932.1| flagellar MS-ring protein [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 317

 Score =  180 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 58/338 (17%), Positives = 122/338 (36%), Gaps = 62/338 (18%)

Query: 258 FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA----------QRSETSQPESAVT 307
           +++ V A ++    +     ++PD    RS +   +             + ++QP    T
Sbjct: 1   YKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNEQRSSSSSSGGVPGALSNQPPGPAT 60

Query: 308 V----------------------EQNMPHVSDRKVPLPRSLENTDKK--EEQSNYEINTK 343
                                  + N   + D     P        K  +   N+E++  
Sbjct: 61  APQTAGAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPADKRVQSTKNFELDRS 120

Query: 344 SIATTHDNYKLERLSIAVVVNK-GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402
              T     +L RLS+AVVV+   +     G  +      + LA   ++V  A G ++ R
Sbjct: 121 ISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVSRAPWSAADLARFTRLVQDAVGFDASR 180

Query: 403 GDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           GD++++ ++ F   +           Q  F DI+ +            VG + +  L   
Sbjct: 181 GDSVSVINVPFSSERAEVLPEASFYSQPWFWDIVKQ-----------AVGVIFILILVFG 229

Query: 459 ALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF-SHSRNLQ 516
            LR  L+NI + K+ E+ G               G + ND ++L      +  S +    
Sbjct: 230 VLRPVLNNITNGKRKELAGFGG-DAELGGMGGLDGELSNDRVSLGGPQSILLPSPTEGYD 288

Query: 517 SRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
           +++N+         +  ++  +  R A+++++W  ++ 
Sbjct: 289 AQLNA---------IKSLVAEDPGRVAQVVKEWINTDE 317


>gi|238924170|ref|YP_002937686.1| flagellar biosynthesis/type III secretory pathway lipoprotein
           [Eubacterium rectale ATCC 33656]
 gi|238875845|gb|ACR75552.1| flagellar biosynthesis/type III secretory pathway lipoprotein
           [Eubacterium rectale ATCC 33656]
 gi|291524899|emb|CBK90486.1| flagellar basal-body M-ring protein/flagellar hook-basal body
           protein (fliF) [Eubacterium rectale DSM 17629]
 gi|291529040|emb|CBK94626.1| flagellar basal-body M-ring protein/flagellar hook-basal body
           protein (fliF) [Eubacterium rectale M104/1]
          Length = 533

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 101/578 (17%), Positives = 210/578 (36%), Gaps = 75/578 (12%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           AILD++  ++K   +  R+   +L S++ V I+  +     ++ P    L      S+ +
Sbjct: 7   AILDKITAWWKKFNTKQRS---VLISIVAVVIVALVILGVVISRPTQVELVEAQSASEAS 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L + NI + + D+     V  S    A + L   G+P+ + +          SF 
Sbjct: 64  TIKGVLEDNNISYEV-DSKLVFFVNKSDEVNAIMALGDNGIPAQAYSIDN---VTDGSFS 119

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG-SFRKIGARPTASVMIRAI 180
            T   ++      LE ++   ++  S +  A V I MPD   +  K     TA+V +   
Sbjct: 120 TTEADKQKKYQVYLEDKLKDHLEKQSYVNEASVDITMPDKDGTILKSKEEATAAVTLGLK 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAI 237
           +      A AI  LVA A+ N     +T++D    +L +    +    +    LS  Q +
Sbjct: 180 DSITDDQAYAIARLVATALGNDTTKGITIIDKKANVLYSGGDSDTSAGLATSQLSYKQKL 239

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD-PDSKVERSIRLSKDAQR 296
           + +++  + K L +     N    +  +++    +  +  Y  PD + +  +  S+   +
Sbjct: 240 EEQVKNEVKKTLESSNIFSNIEVGMNLDIDFSKTETAQKNYTLPDGQTDTGLLDSESNYQ 299

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE- 355
           S+ +  ++AV    +    +        +   +   +    Y  + K   + +D   ++ 
Sbjct: 300 SDATNGQAAVPGTDSNSDDTTYTT-QDGTPSESSITDNDKKYLNDEKITTSKNDGGSIKY 358

Query: 356 -RLSIAVV-----------------VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG 397
              SI VV                 +      E   + AD  K+     ++   V  ATG
Sbjct: 359 DSSSITVVATRYKVYDESTLEKNGKLKDTSWEEYKAKHADPVKVTDVDQDLVTSVQNATG 418

Query: 398 INSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457
           I+        I+ + + + +  +  +   S  DIL              +  L+   LG 
Sbjct: 419 ISQ-------ISFLVYEQPEFVDKASGVRSLSDILQ-----------IAITVLIFALLGF 460

Query: 458 HALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS 517
              +                        S+  +      + +++DS  +    ++  L+ 
Sbjct: 461 VVFK------------------------STRSSEEEPKEEELSVDSLLEQTAENNEPLED 496

Query: 518 RINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
            I      ++ L +   ++ N E  A++LR W   + E
Sbjct: 497 -IGYNEKTETRLLIEKFVDENPEAAAQLLRNWLNEDWE 533


>gi|218133660|ref|ZP_03462464.1| hypothetical protein BACPEC_01529 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991035|gb|EEC57041.1| hypothetical protein BACPEC_01529 [Bacteroides pectinophilus ATCC
           43243]
          Length = 542

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 90/583 (15%), Positives = 203/583 (34%), Gaps = 81/583 (13%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            I  +LL  +   T   R  I+   +V+++ +++       VN P Y+ L      + + 
Sbjct: 6   QIGQKLLDVWNKYTVKQRAVIVSSVAVVIIALVILAVV---VNRPQYETLTTCSSYAQMQ 62

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS-F 120
            ++  L++ +I + ++DN   + V    +  A++ LA+  +     + GY + D ++  F
Sbjct: 63  EVTNLLTDNSISYNVADNSMVVKVRKEDLTNAKMALASSNI----QSDGYTIEDALSGSF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIRA 179
             T   ++    + LE +    ++S  G+  A V + + +    +       T  V+++ 
Sbjct: 119 STTENDKQKKWQKYLESKFKTDLESFDGVKEASVTVTLGEATNIYYSTKQEATVGVVLQL 178

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKS-------L 231
                 + A  +  L+A +V N    ++T++ + G  L + ++ + ++ G S       L
Sbjct: 179 TKQIDDEVAAGMAQLLATSVGNKTTDNITIISTDGTTLFSKSDTDLSVSGTSTVGLNGRL 238

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD-PDSKVERSIRL 290
                I+  I  ++ + + A    D     +  ++N D        Y  PD   +     
Sbjct: 239 KYQSQIESSITSHLRQGMLATGLYDEAYVQMNLDMNWDAVNTINTQYSAPDGMEQGLYSE 298

Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
           S +   S T+          N    S        +   ++   ++  Y  N     T   
Sbjct: 299 SYEEASSGTNGAGGVPGTSSNSGDNSTTYYVSDGTNSTSEYSVKKYAYLPNVLVTTTDSQ 358

Query: 351 NYKL----ERLSIAVV---------------VNKGRLTEVLGRSADQGKIDSYLAEINKI 391
             K+      +++  V               ++     +   ++A           IN  
Sbjct: 359 PGKVIYNTSSMTVTFVKNVIYNEDECRKRGLLDNTTWDDFKAQNAQSVAAQVDQTWINA- 417

Query: 392 VSAATGINSRRGDTITITSM--DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGT 449
           +S  TGI+++    IT+ +    F  +   N+            R++   +   + +V  
Sbjct: 418 ISTGTGIDTQ---NITVLAYQKPFFVDSEGNA----------FVRNWTFWLQIALAVVIL 464

Query: 450 LLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF 509
            L+ F+   + R L    + K+ E+  + +L                             
Sbjct: 465 GLLAFVVFRSARPLTV--EEKEPELSVEEMLRTT-------------------------- 496

Query: 510 SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
              +     I+     +    +   ++ N E  A +LR W   
Sbjct: 497 KEQQEPLEDIDLQEKSEIRKAIEKFVDENPEAVALLLRNWLND 539


>gi|266623336|ref|ZP_06116271.1| flagellar M-ring protein FliF [Clostridium hathewayi DSM 13479]
 gi|288864874|gb|EFC97172.1| flagellar M-ring protein FliF [Clostridium hathewayi DSM 13479]
          Length = 539

 Score =  177 bits (448), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 78/517 (15%), Positives = 170/517 (32%), Gaps = 43/517 (8%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
            Y  L+  +   + N I   L+   +  + +  G  ++VP + VG   + ++  G P ++
Sbjct: 54  EYVVLFPGISREENNEILAVLNGRGVGAKRNAEG-EVTVPENQVGDIMLDMSELGYPKTA 112

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR- 165
               +++F     F  T F +    +  L+  I RT++ ++GI  A V + + D  ++  
Sbjct: 113 LP--FDIFSDNMGFTTTEFEKRQYLLLNLQDRIERTLKDMNGIKNAIVTLNVSDDSNYVW 170

Query: 166 -KIGARPTASVMIRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLD--STGKLLTAN 220
              GA  T +V +  +       +   AI++L+A +VP L   +VTV++  +  ++++ +
Sbjct: 171 DDQGADSTGAVSLTLMPDCELSPEKVGAIKNLIANSVPRLLPENVTVVNAETMQEMVSDD 230

Query: 221 EMERNILG-KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                  G   L     ++  ++  I   L         R +    ++ D     ++ Y+
Sbjct: 231 VGGLTSYGLGRLDFETKVEKRLQDKIMNVLTLAYPPGQIRVSATVVIDYDKMITEDLQYE 290

Query: 280 P--DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSN 337
           P  + +       +  +   +          E N    +        +           +
Sbjct: 291 PQDNGQGVVEHYKTGQSVNGQGGGAGGVAGEENNTDIPTYGAAGTGGANGANGDYYRDVD 350

Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG 397
           Y +         DN KL++ ++A+ VN   LT            +S   ++    S A  
Sbjct: 351 YLVGYIKKQIEKDNVKLQKATVAITVNDSNLT------------ESKKQQLIDAASKAAN 398

Query: 398 INSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457
           I         I    F +     +   +   + + +     +   ++             
Sbjct: 399 IAPE-----DIVVSSFQQIASDKTPEPEKPVIPVTAPGVGGIDPRILIAGAA-------- 445

Query: 458 HALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS 517
                           +  +              G    D + LD    +    S     
Sbjct: 446 -----AGIFLFLVLLFLILRHRKKKQRKEDQELFGPFEGDAVELDRDIAERAEESAVENR 500

Query: 518 RINSYVSKQ-SDLRLLHMIEINEERFAKILRKWARSE 553
             N  V  Q    ++    E N E  A ++  W + +
Sbjct: 501 LTNIPVKPQDPVNQVRSFAEDNPEIIASMISNWLKED 537


>gi|160939666|ref|ZP_02087014.1| hypothetical protein CLOBOL_04558 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437457|gb|EDP15221.1| hypothetical protein CLOBOL_04558 [Clostridium bolteae ATCC
           BAA-613]
          Length = 535

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 87/520 (16%), Positives = 182/520 (35%), Gaps = 47/520 (9%)

Query: 44  NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP 103
           N+  Y  L+  +   + N I   L    +  + +D G  ++VP   +G   I ++  G P
Sbjct: 51  NAGSYVTLFPGISREENNEILAVLGGRGVAAKRNDEG-EVTVPEDQLGDIMIEMSELGYP 109

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
            ++    +++F     F  T F +    +  L+  + RT++ ++GI  A V + +PD  +
Sbjct: 110 KTALP--FDIFSDNMGFTTTEFEKRQYLLMNLQDRLERTLKDMTGIKNAIVTLNVPDESA 167

Query: 164 FR--KIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDS-TGKLLT 218
           +      +  T SV +  +       +   AI++LVA +VP L    VTV+++ T + + 
Sbjct: 168 YVWEDEDSGSTGSVSLTLMPSYDLSPEKVSAIKNLVADSVPRLAPERVTVVNAETMQEMV 227

Query: 219 ANEMERNILG-KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
           ++++     G   L     ++  ++  I   L      D  R +    ++ D      + 
Sbjct: 228 SDDIGNTAYGLNRLDFEAKVEERLQNKIKNVLTLAYSPDKIRVSATVVIDYDKMITENLE 287

Query: 278 YDP--DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ 335
           Y+P  + +                         E N    +        + + T      
Sbjct: 288 YEPQENGQGVVDHYRESRGVAGGQIGAGGIAGEENNTDIPAYGTAGTGGTAQGTGDYYRD 347

Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395
            +Y ++        DN KL++ ++A+ VN            D    +S   ++    S A
Sbjct: 348 VDYLVSYIKKQIEKDNVKLQKATVAITVN------------DDNLTESKKQQLIDAASKA 395

Query: 396 TGINSRRGDTITITSMDFL--ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVT 453
             I       I ++S   +  E           + +D    +    I A   ++  LL+ 
Sbjct: 396 ANIAPE---DIVVSSFREVPKETAPAKPALPVQAPVDTGIDYRTIAIAAGAGILLFLLIL 452

Query: 454 FLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR 513
           FL     RR    +D +        +     +        + ND   +  + +D      
Sbjct: 453 FLIFGRRRRRQMKEDQELFAPFEGEVPPSADMEERAEEAAVQNDLGRMQVNPED------ 506

Query: 514 NLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                           ++    ++N E  A ++  W + +
Sbjct: 507 -------------PVEQVRSFAQMNPEIIASMISSWLKED 533


>gi|23011692|ref|ZP_00051978.1| COG1766: Flagellar biosynthesis/type III secretory pathway
           lipoprotein [Magnetospirillum magnetotacticum MS-1]
          Length = 285

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 60/293 (20%), Positives = 125/293 (42%), Gaps = 9/293 (3%)

Query: 261 AVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV 320
            V AEL+++  + R   +DP+S+V RS +   +   S T   E  V+V   +P  +  + 
Sbjct: 2   QVAAELDLNRVESRSESFDPESRVVRSTQTRSEN--SLTGGAEGQVSVGNELPGANQNQA 59

Query: 321 PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380
             P+  +++ K EE +NYEI+  +   T +  +L RLS+AV+V+        G+   Q +
Sbjct: 60  -QPQQKDSSQKNEETTNYEISRVTKVETLEGGRLRRLSVAVLVDGVYAPGADGKPVYQPR 118

Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440
            D+ +  I  +V  A G +  RGD + + ++ F E+              +LS     V+
Sbjct: 119 PDAEIERIAALVRTAVGYDKGRGDQVEVVNLRFAESPAAPDFAEPGLIQSLLSPTKEDVM 178

Query: 441 NALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIA 500
             +   V +LL   + +  +R L      +  E    +  +     +         + + 
Sbjct: 179 RLVELAVLSLLTVIVLMAVVRPLLR-RVLESDEPAALAGPAGALALAGAPGAPGTVEVVV 237

Query: 501 LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
            +++ +          +++N  +  ++  R++ M+  +     ++LR W    
Sbjct: 238 RENATKKFLDS-----AKLNGEIQAETVERVVDMVRASPSETVEVLRNWIHDT 285


>gi|289678989|ref|ZP_06499879.1| flagellar MS-ring protein [Pseudomonas syringae pv. syringae FF5]
          Length = 178

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 47/155 (30%), Positives = 79/155 (50%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           + F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L
Sbjct: 24  MSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + ANI++ +  N  ++ V S  V +ARI LA  G+  + +N G+E+ DK    G + FM+
Sbjct: 84  TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162
                R LEGE+ARTI +++ +  ARVH+ +P   
Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSS 178


>gi|291536002|emb|CBL09114.1| flagellar basal-body M-ring protein/flagellar hook-basal body
           protein (fliF) [Roseburia intestinalis M50/1]
          Length = 532

 Score =  170 bits (432), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 93/579 (16%), Positives = 202/579 (34%), Gaps = 78/579 (13%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            IL+++ +++K   +  +  ++ + +VI+V + +  A    V+ P+   L+     ++  
Sbjct: 7   NILNKITEWWKKFNTKQKALLISIVAVIIVALAILAAV---VSKPNMVTLHECQTTAEAG 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            +   L   +I +++S +G    V +     A I L    +PS  ++           F 
Sbjct: 64  TVKDLLDGESISYQMSQDGLIFYVDAKDEAAASILLGKNDIPSQGASIDNVF---DGGFS 120

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMGSFRKIGARPTASVMIRAI 180
            T   +       L+   A  ++++S + +A V + +P D G+         A+V++   
Sbjct: 121 STEADKTKKYKVYLQKYFAEQLETLSNVESASVTLDIPNDDGTILAKDQDSYAAVILTLN 180

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER---NILGKSLSIVQAI 237
                  A  +   +A  + N +  ++ +LDS   +L + +            LS+    
Sbjct: 181 GDMDEDQAAGLAKYIATQLGNKNTDNIQILDSNSNVLFSGDSSDTNVGTANSQLSVKSKA 240

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDT-QQIREIVYDPDSKVERSIRLSKDAQR 296
           ++ ++  +   +      D+   A    ++ DT ++     Y PD +    +    + + 
Sbjct: 241 ENLVKSKVKDVMVGSSLFDHVEVAPELVMDFDTSEEATHEYYAPDGQTNGMVGSKSEYES 300

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE- 355
                  +    + N        V    +  ++   +  +NY+ N K    + +   +  
Sbjct: 301 ESEGGAAATPGTDSN---DDTSYVIEDNNYTHSTVTDTTTNYQNNEKVTKKSSNGGTVNY 357

Query: 356 -RLSIAVV-----------------VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG 397
              S+++V                 ++     E +  ++D   I      I  ++S ATG
Sbjct: 358 ADSSVSLVATKYRIYDEDTLRASGALDNMTFDEYVAANSDPTPITVDQEYIT-MISNATG 416

Query: 398 INSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457
           I +   D ITI +    E  +F   +   S  D L      +I  L+           G 
Sbjct: 417 IPT---DKITIIA---QEEPVFQYSSGGRSASDYLQIVLVVLILLLL-----------GY 459

Query: 458 HALRRLHNIDDAK-KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ 516
              R       A+ + E+  +S+L                               S+   
Sbjct: 460 VVFRSTRKEKVAEIEPELSVESLLEST--------------------------KESQEEM 493

Query: 517 SRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
             I      ++ + +   +E N E  A +LR W   E E
Sbjct: 494 QDIGYNEKSETRILIEKFVEDNPEAAASLLRNWLNEEWE 532


>gi|257413753|ref|ZP_04744108.2| flagellar M-ring protein FliF [Roseburia intestinalis L1-82]
 gi|257202322|gb|EEV00607.1| flagellar M-ring protein FliF [Roseburia intestinalis L1-82]
 gi|291538496|emb|CBL11607.1| flagellar basal-body M-ring protein/flagellar hook-basal body
           protein (fliF) [Roseburia intestinalis XB6B4]
          Length = 537

 Score =  170 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 93/579 (16%), Positives = 202/579 (34%), Gaps = 78/579 (13%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            IL+++ +++K   +  +  ++ + +VI+V + +  A    V+ P+   L+     ++  
Sbjct: 12  NILNKITEWWKKFNTKQKALLISIVAVIIVALAILAAV---VSKPNMVTLHECQTTAEAG 68

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            +   L   +I +++S +G    V +     A I L    +PS  ++           F 
Sbjct: 69  TVKDLLDGESISYQMSQDGLIFYVDAKDEAAASILLGKNDIPSQGASIDNVF---DGGFS 125

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMGSFRKIGARPTASVMIRAI 180
            T   +       L+   A  ++++S + +A V + +P D G+         A+V++   
Sbjct: 126 STEADKTKKYKVYLQKYFAEQLETLSNVESASVTLDIPNDDGTILAKDQDSYAAVILTLN 185

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER---NILGKSLSIVQAI 237
                  A  +   +A  + N +  ++ +LDS   +L + +            LS+    
Sbjct: 186 GDMDEDQAAGLAKYIATQLGNKNTDNIQILDSNSNVLFSGDSSDTNVGTANSQLSVKSKA 245

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDT-QQIREIVYDPDSKVERSIRLSKDAQR 296
           ++ ++  +   +      D+   A    ++ DT ++     Y PD +    +    + + 
Sbjct: 246 ENLVKSKVKDVMVGSSLFDHVEVAPELVMDFDTSEEATHEYYAPDGQTNGMVGSKSEYES 305

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE- 355
                  +    + N        V    +  ++   +  +NY+ N K    + +   +  
Sbjct: 306 ESEGGAAATPGTDSN---DDTSYVIEDNNYTHSTVTDTTTNYQNNEKVTKKSSNGGTVNY 362

Query: 356 -RLSIAVV-----------------VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG 397
              S+++V                 ++     E +  ++D   I      I  ++S ATG
Sbjct: 363 ADSSVSLVATKYRIYDEDTLRASGALDNMTFDEYVAANSDPTPITVDQEYIT-MISNATG 421

Query: 398 INSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457
           I +   D ITI +    E  +F   +   S  D L      +I  L+           G 
Sbjct: 422 IPT---DKITIIA---QEEPVFQYSSGGRSASDYLQIVLVVLILLLL-----------GY 464

Query: 458 HALRRLHNIDDAK-KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ 516
              R       A+ + E+  +S+L                               S+   
Sbjct: 465 VVFRSTRKEKVAEIEPELSVESLLEST--------------------------KESQEEM 498

Query: 517 SRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
             I      ++ + +   +E N E  A +LR W   E E
Sbjct: 499 QDIGYNEKSETRILIEKFVEDNPEAAASLLRNWLNEEWE 537


>gi|168334544|ref|ZP_02692700.1| flagellar M-ring protein FliF [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 459

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 76/483 (15%), Positives = 158/483 (32%), Gaps = 40/483 (8%)

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK-VNSFGLTSFMQEITRVRALEG 137
           +G +I V    +  A+I L  + +P       Y  +D   NS   T   +    +   + 
Sbjct: 6   DGRTIQVNEEDLNTAKIILTRENVPRG----DYTFYDAITNSMSTTEAEKRTKLIYLKQV 61

Query: 138 EIARTIQSISGIVAARVHIVMPDM-GSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVA 196
           ++   +  + GI  A V + +P+   SF       +ASV++           E I  L++
Sbjct: 62  DLENILMGMEGIAEATVQLNVPEEKNSFIASQMESSASVVLTLHRQISDNQIEGIARLLS 121

Query: 197 AAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255
            AV NL + ++T+LDS   +L + +E          S+  + + +I   +   L+     
Sbjct: 122 NAVDNLKLENITILDSDSNVLFSGDEFGEMTASDQQSLKSSAEKDIVNKLTTLLSPIY-- 179

Query: 256 DNFRSAVVAELNMDTQQIREIVYD---PDSKVERSIRLSKDAQRSETSQPESAVTVEQNM 312
           D    +    L+ D  +  +  Y     DS+     + S+    +   Q   A  ++ N+
Sbjct: 180 DEVAISPNLILDFDYFEQTKEEYTTPITDSQTGLVDQESRRNYEATNIQDGFAPGLDPNV 239

Query: 313 PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372
             V    V       N +       Y+ N        +   ++  + +V +N  +     
Sbjct: 240 EDV-PEYVAGNELSGNYEGGTSDIIYKHNKTLSNEIKNIGTIDYNNSSVAINLTKYNVYD 298

Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMD-- 430
               +    D       K+ +  T I      TI    M      +      +  F+D  
Sbjct: 299 EALLEDTLPDDQTWAEFKLANDVTNILVVEQATIDAIKMGAGLENVAVIAYEKPVFIDKE 358

Query: 431 ILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVT 490
             +     VI  ++ L    ++  + +   + +  +    + E      ++ P       
Sbjct: 359 PFTLQTEDVIPYILLLALGAVIVVVMIRFRKPVEEVVTEDEFEFEDLLPVAGP------- 411

Query: 491 TGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
                                  +    I      ++  ++   I+   E  A +LR W 
Sbjct: 412 ------------------EEEEEDSLQDIELKEVIETKAKIDKFIDEKPEAVAGLLRNWL 453

Query: 551 RSE 553
             +
Sbjct: 454 EED 456


>gi|88800453|ref|ZP_01116017.1| flagellar M-ring protein FliF [Reinekea sp. MED297]
 gi|88776783|gb|EAR07994.1| flagellar M-ring protein FliF [Reinekea sp. MED297]
          Length = 268

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 50/164 (30%), Positives = 73/164 (44%), Gaps = 1/164 (0%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
               L   R   L   +   I L +    +     Y  L       D   +   L   NI
Sbjct: 57  GFNKLTMMRQFGLLIGLAASIALGLGVVLWSQKETYRPLMNSTNSYDARELIEVLQANNI 116

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
           DF I  +   + V  + + +AR+ +A  GL S     GYEL D+    G + FM+    +
Sbjct: 117 DFDIDPSSGVLLVRQNDLHQARLAVAGAGL-SDDQTVGYELLDQDQPLGQSQFMENARYL 175

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
           R+LEGE+ARTI SI+ +  ARVH+ +P+   F +     TASV 
Sbjct: 176 RSLEGELARTISSINQVKTARVHLAIPERSVFVRDRRETTASVF 219


>gi|302670718|ref|YP_003830678.1| flagellar M-ring protein FliF [Butyrivibrio proteoclasticus B316]
 gi|302395191|gb|ADL34096.1| flagellar M-ring protein FliF [Butyrivibrio proteoclasticus B316]
          Length = 539

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 91/564 (16%), Positives = 201/564 (35%), Gaps = 52/564 (9%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
            ++L ++   T+  +T I+   +V+L+ I++ +     +N P Y  L       + + I 
Sbjct: 10  QKVLDWWNQFTAKQKTLIVGAGTVVLLTIIILVTV---LNQPQYVLLAQATSTKEASEIK 66

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L   +I++++SD+G    V       A + L A  + S +            SF  T 
Sbjct: 67  DLLDSNSINYKMSDDGLEFRVLKKDQANANLILGANDIQSYAYTIDN---VTEGSFSTTE 123

Query: 125 FMQEITRVRALEGEIART-IQSISGIVAARVHIVMPDMG-SFRKIGARPTASVMIRAINP 182
           + ++   V+ LE ++    +     I +A V + +PD   +        +A +++   +P
Sbjct: 124 YDKQKKYVKYLESKLEHDMLAKFDTIDSANVTLHIPDDDGTLIGNKDEASAWILLNINDP 183

Query: 183 SVYKSAEA--IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQAI 237
           + +    A  +   VAA++      D+ +LD +G LL +   E    G     L++    
Sbjct: 184 NGFGEENANFVAKAVAASLGKKSTNDIVILDYSGNLLFSGSEETTDAGIASNQLNLKTKA 243

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           +  ++  + K L      D+ + A    L+   ++     Y P     + +   +    +
Sbjct: 244 EQIVKNEVKKVLLGTKLYDDIQVASNLVLDFSKEERTTHNYTPAEDQTQGVLSHESIYNA 303

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER- 356
           E     S +             V    +  ++   EE  +Y  N      T+    ++  
Sbjct: 304 ENVNGVSGIPGTDTNEDDETTYVTQDNTNSSSTITEEDRSYLPNEDITTRTNIPGAIKYD 363

Query: 357 -LSIAV-VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT--SMD 412
             SI+V  +N   + E     A  G +D    +I     A   +       I +   +  
Sbjct: 364 ESSISVTAINYVVMKEEDYDKAANGDLDWKDYKIANTEPATMQVPDE---MINVVAKATG 420

Query: 413 FLENQLFNSGTVQVSFMDILSRHF--ATVINALVFLVGTLLVTFLGLH-ALRRLHNIDDA 469
                +  +   Q  F+D    +     ++     L+   L+ F+ +          ++ 
Sbjct: 421 IAAGNVAMAAYTQYVFIDKTGANITVTDILQIATILIILGLLAFIVIRSMWTSKKTEEEP 480

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
           +  E+  + +L   P  +         ++I +D+ ++                    +  
Sbjct: 481 EPEELSVEQLLESTPEETL--------EDIEMDTGSE--------------------TKR 512

Query: 530 RLLHMIEINEERFAKILRKWARSE 553
            +   ++ N E  A +LR W   +
Sbjct: 513 LIEKFVDENPEAAATLLRNWLNED 536


>gi|291519597|emb|CBK74818.1| flagellar basal-body M-ring protein/flagellar hook-basal body
           protein (fliF) [Butyrivibrio fibrisolvens 16/4]
          Length = 537

 Score =  166 bits (421), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 89/576 (15%), Positives = 194/576 (33%), Gaps = 71/576 (12%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           AIL+++L++++  T   R + +++ S+  V ++  +     +  P    L V  +     
Sbjct: 7   AILNKILEWWRKFT---RRQQVLIVSITAVVVVSLIILGVILTRPTMMQLVVCEDGKQAA 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            +   L +  I +  S +G +  +      +A + L +  +P+S       +     SF 
Sbjct: 64  AVKTLLEDEGIKYETSQDGYTFYIDEKDEWRANVLLGSNEIPTSKYTIDNVI---DGSFS 120

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPT-ASVMIRAI 180
            T   ++      LE + A  I+    +  ARV + +P+         +P  +SV++   
Sbjct: 121 TTEADKQKRYKILLEQQFAEDIEQFEMVEKARVTLNIPEDDGTIIARDQPGWSSVILTLS 180

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240
            P   ++   I  ++A  + N    ++T++D+ G LL          G S S  Q  + +
Sbjct: 181 APISDETVTGIATIMATNLANETTDNITIMDTDGNLLY-PTANTGSAGASASANQDARDK 239

Query: 241 IEMNINKALAAFLGVDNFR--SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
               I   +   L   N     +V   L+M+  +   + YD      R+         S 
Sbjct: 240 ARAEIVSRVQTVLDGTNLYDAVSVGVNLSMNFDENSYVDYDYSVDEGRTEGYLDSESGSS 299

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEE-QSNYEINTKSIATTHDNYK--LE 355
           +S       V     +  D    +  + +     EE   +Y  + +      +  K  L+
Sbjct: 300 SSSIGGNGGVPGTDTNDDDTTYVMEDNNQTQTSTEEFVKDYLPDERITTHKDEIGKQILD 359

Query: 356 RLSIAV------------------VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG 397
             SI+V                  +   G+  +   ++           +I +IV+  TG
Sbjct: 360 DSSISVTCKKFAIYNQDKMEKDGTLTEAGQTFDEFVKANSNPVQMEVTDDIVEIVARTTG 419

Query: 398 INSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457
                   + + + +    Q      ++ +             + +  ++  L+   LG 
Sbjct: 420 FPVA---NVKVVAYEIPMFQYSEGMPIKPT-------------DIIQIVLALLIFAMLGF 463

Query: 458 HALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS 517
              R L                         V   L  +D IA  ++ ++          
Sbjct: 464 VVFRSLKTE------------------EEEPVEQELTIDDLIASTAAEEEEELEDIGYTE 505

Query: 518 RINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
           +  + +       +   ++   E  A++LR W   +
Sbjct: 506 KSEARIL------IEKFVDEKPEAVAQLLRNWLNED 535


>gi|289811515|ref|ZP_06542144.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 158

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 42/117 (35%), Positives = 69/117 (58%), Gaps = 2/117 (1%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 44  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 103

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ 
Sbjct: 104 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLA 158


>gi|257457887|ref|ZP_05623046.1| flagellar M-ring protein FliF [Treponema vincentii ATCC 35580]
 gi|257444600|gb|EEV19684.1| flagellar M-ring protein FliF [Treponema vincentii ATCC 35580]
          Length = 567

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 99/555 (17%), Positives = 204/555 (36%), Gaps = 74/555 (13%)

Query: 42  FVNSPHYDNLYVKLEVSDVN---RISVALSEANIDFRISDNGSSISVPSSMVGK-ARIHL 97
           +   P    L     V+D     RI + L+E N+   +S +G  ISV      +  R  L
Sbjct: 44  WSAKPSLVPLI-DTPVTDATVRERIVLRLNEENVKATVSQSG-IISVNDEQTARRMRAIL 101

Query: 98  AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
             + L   +++        V  +  T F + I   RA+  E+ + I+++  +  A V + 
Sbjct: 102 LREDLIPQNTDPWA--LFDVERWTRTDFERNIDVRRAVIEEVRKHIKALDDVDDASVVVN 159

Query: 158 MPDMGSFRKIGARPTASVMIRAINPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDST 213
           +P+   F+      TASV++     S      K  E I+ L+  AV  L   ++T+ D++
Sbjct: 160 LPEDKLFQADQNPVTASVILYPKPGSDISTNRKKIEGIQKLLKYAVEGLTDDNITIADNS 219

Query: 214 GKLLTANEMERN-----ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRS-AVVAELN 267
           G +L      ++     I+ K   I+  ++ + E+ I   L    G D  R  ++  +++
Sbjct: 220 GNILNDFAGLKDFDRLSIIEKQQKIIAKLETQYEIKILNILQKTYGTDRVRDLSIKIDMD 279

Query: 268 MDTQQIREIVY--------DPDSK---------VERSIRLSKDAQRSETSQPESAVTVE- 309
           M  +    + Y        +P++          V RS   +    +     PE    VE 
Sbjct: 280 MSEKTAETVEYLPFQLRADNPETPYDESEVRASVTRSSETATTTYQGTGFNPEGPTGVEG 339

Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369
           Q  P   D       S ++  K    +N EI ++  +      ++ R +++V ++     
Sbjct: 340 QTAPSYKDTSNLTGLSTQSIVK----TNEEIGSRRTSEIVSP-EMGRRTVSVNIDGQWRK 394

Query: 370 EVLG-----------RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           +                      D  L +  + V AA G ++ R D++++ ++ F     
Sbjct: 395 KKDANGNLVIKDGQIEREYIPIPDDELQKATQAVQAAIGYSALRNDSVSVLNIQFDRLAE 454

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
           F        F  +  +    +  A + L+  + + +       R+ + +  ++  +  + 
Sbjct: 455 FEKED-NAYFRSVQRQRILLISLAGLALLLLIFIVY-------RIVSREIERRKRLREEE 506

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
           +L    +             + +  S ++       L++ IN+                +
Sbjct: 507 LLRQHQLEREKALWEAEQAGMEVSMSVEE-MKRRELLENVINN-------------AREH 552

Query: 539 EERFAKILRKWARSE 553
            E  A +LR W   E
Sbjct: 553 PEDVALLLRTWLMEE 567


>gi|330940716|gb|EGH43724.1| flagellar MS-ring protein [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 251

 Score =  159 bits (403), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 49/255 (19%), Positives = 102/255 (40%), Gaps = 30/255 (11%)

Query: 309 EQNMPHVSDRKVPLPRSLENTDKK--EEQSNYEINTKSIATTHDNYKLERLSIAVVVNK- 365
           + N   + D     P        K  +   N+E++     T     +L RLS+AVVV+  
Sbjct: 18  DANGQQIMDPATGQPALAPYPADKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDM 77

Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV- 424
            +     G  +      + LA   ++V  A G ++ RGD++++ ++ F   +        
Sbjct: 78  VKTNAANGEVSRAPWSAADLARFTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEAS 137

Query: 425 ---QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSIL 480
              Q  F DI+ +            VG + +  L    LR  L+NI + K+ E+ G    
Sbjct: 138 FYSQPWFWDIVKQ-----------AVGVIFILILVFGVLRPVLNNITNGKRKELAGFGGD 186

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIF-SHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
           +       +  G + ND ++L      +  S +    +++N+         +  ++  + 
Sbjct: 187 AELGGMGGL-DGELSNDRVSLGGPQSILLPSPTEGYDAQLNA---------IKSLVAEDP 236

Query: 540 ERFAKILRKWARSEI 554
            R A+++++W  ++ 
Sbjct: 237 GRVAQVVKEWINTDE 251


>gi|325926453|ref|ZP_08187774.1| flagellar biosynthesis/type III secretory pathway lipoprotein
           [Xanthomonas perforans 91-118]
 gi|325543152|gb|EGD14594.1| flagellar biosynthesis/type III secretory pathway lipoprotein
           [Xanthomonas perforans 91-118]
          Length = 241

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 88/229 (38%), Gaps = 8/229 (3%)

Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385
                 K    NYE++     T     +++R+S+AV+++        G+  +Q    + L
Sbjct: 19  TPTESSKSATRNYELDRTLQHTRQPAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAEL 78

Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445
             I  +V  A G ++ RGDT+++ +  F+   +      +             V N L  
Sbjct: 79  TRIEGLVKQAVGFDAARGDTVSVMNAPFVREAVAGEEGPKWWEDP-------RVQNGLRL 131

Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505
           LVG ++V  L    +R               +          +    ++  D+  +    
Sbjct: 132 LVGAVVVLALLFGVVRPTLRQLTGVTAVKDKQGKAGKDGTPQSADVRMVDEDDDLMPRLE 191

Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRL-LHMIEINEERFAKILRKWARSE 553
           +D     ++ ++ I    + +  +RL    ++ + +R A++++ W  SE
Sbjct: 192 EDTAQIGQDKKTPIALPDAYEERMRLAREAVKADSKRVAQVVKGWVASE 240


>gi|226313070|ref|YP_002772964.1| flagellar M-ring protein [Brevibacillus brevis NBRC 100599]
 gi|226096018|dbj|BAH44460.1| probable flagellar M-ring protein [Brevibacillus brevis NBRC
           100599]
          Length = 220

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 54/217 (24%), Positives = 103/217 (47%), Gaps = 10/217 (4%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYV-KLEVSDVNRI 63
           D+    +   +   +  IL ++  +L+ + L++   +  + P Y  LY  KL   ++  I
Sbjct: 10  DRFTSKWNQFSKKQKWMILGISLFLLISLGLYI---YIASQPVYKPLYNQKLSEQEIGTI 66

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L  + I ++I+ NG+SI VP  M     + LAAQG+PS +     E+F   ++ G+T
Sbjct: 67  KQELEASQIPYQITGNGTSIEVPEKMAQDVIVDLAAQGIPSQAG-INAEIF--SSTLGVT 123

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAINP 182
               ++ +  AL+ E+ + ++ + G+ +A+V I +P    +        TASV++     
Sbjct: 124 DRQFDVMKKEALQQELRKMLERVKGVRSAQVMITLPQESVWVTETPDTATASVIVDVEPG 183

Query: 183 --SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
                K   ++  LV+ +VP L M  + + D     L
Sbjct: 184 TTLDQKQINSLYLLVSRSVPKLPMEAIAITDQYSNPL 220


>gi|119503664|ref|ZP_01625747.1| flagellar M-ring protein [marine gamma proteobacterium HTCC2080]
 gi|119460726|gb|EAW41818.1| flagellar M-ring protein [marine gamma proteobacterium HTCC2080]
          Length = 300

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 58/316 (18%), Positives = 112/316 (35%), Gaps = 24/316 (7%)

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
             I   L   LGV   R+ V A+L+    +     Y P++ + RS + ++D      +  
Sbjct: 3   DRIESILEPILGVGAARAQVTADLDFTRVESTSEQYSPET-IMRSEQTTEDLTLKSIAAE 61

Query: 303 ESAVTVEQNMPHVSDR----KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
            +   + +  P  +D                + ++   N+E++           KL RLS
Sbjct: 62  GAPGQLTEQPPGAADPDDAENAVAQAPSPTRESRKATRNFEMDKTISHVREVPGKLRRLS 121

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           IAVV++     +    + +QG+    L EI  +V  A G +  RGDT+++ +  F+  + 
Sbjct: 122 IAVVIDYVTDEDGNRTALEQGR----LDEITALVREAVGFDDARGDTVSVINSPFVVPEA 177

Query: 419 FNS-GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
                   +   D + +     +  +  L+    V        R L     +        
Sbjct: 178 LEEIPEPGLLEQDWIWQAGKGALALIALLMLIFTVI-------RPLIRYSTSYTPPPPPP 230

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
           S   P   S     G + +D +AL    Q     +             QS     +++  
Sbjct: 231 SDGLPQLASPMGADGGINDDTVALSGPAQAALPGTTT-------PAYHQSIAMARNVVNE 283

Query: 538 NEERFAKILRKWARSE 553
              R A +++ W  ++
Sbjct: 284 QPARAAYVVKNWMATD 299


>gi|289670545|ref|ZP_06491620.1| flagellar MS-ring protein [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 230

 Score =  157 bits (396), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 98/237 (41%), Gaps = 10/237 (4%)

Query: 319 KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ 378
                 +      K    NYE++     T     +++R+S+AV+++        G+  +Q
Sbjct: 1   GQATAAAAPTESSKSATRNYELDRTLQHTRQPAGRIKRVSVAVLLDNVPRPGAKGKMVEQ 60

Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFAT 438
               + L  I  +V  A G ++ RGDT+++ +  F+   +      +      +      
Sbjct: 61  PLTAAELTRIEGLVKQAVGFDAARGDTVSVMNAPFVREAVAGEEGPKWWEDPRVQNGLRL 120

Query: 439 VINALVFLVGTLLVTFLGLHA-LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497
           ++ A    V  L + F  +   LR+L  +   K+ +  G +  +P     +    ++ ++
Sbjct: 121 LVGA----VVVLALLFGVVRPTLRQLTGVTAIKEKQRKGGNDGTP----QSADVRMVDDE 172

Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL-LHMIEINEERFAKILRKWARSE 553
           +  L    +D  S  ++ +  I    + +  +R+    ++ + +R A++++ W  SE
Sbjct: 173 DSLLPHMGEDTASIGQDRKPAIALPDAYEERMRVAREAVKADSKRVAQVVKGWVASE 229


>gi|85706154|ref|ZP_01037249.1| flagellar M-ring protein FliF [Roseovarius sp. 217]
 gi|85669318|gb|EAQ24184.1| flagellar M-ring protein FliF [Roseovarius sp. 217]
          Length = 268

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 64/270 (23%), Positives = 120/270 (44%), Gaps = 6/270 (2%)

Query: 287 SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346
           +I    + + + ++   S VTV  N+P           S     +  E+ NYE+++    
Sbjct: 2   TINTDTEERANTSNDQSSDVTVASNLPD--GDVAANGASASENTETRERINYEVSSTERE 59

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
            T     ++R+S+A+++N     +  G  +   + +  L  +  +V AA GI+  RGD +
Sbjct: 60  ITQQPGAIKRMSVAILINGLTTLDASGTPSFALRPEEELTALRDLVVAAVGIDEARGDVV 119

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHN 465
           TI ++ F E    +   V+ S +D L+    T++ +LV  +  L++    L   L R   
Sbjct: 120 TIRTLQF-EPIEPSGTLVEASLLDRLAIDVMTLVQSLVLAIVALILGLFVLRPILSRPPL 178

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
           +  ++ G +   S     P+S  +  G +    ++ D S + +   SR   SRI+    +
Sbjct: 179 MASSQIGRLAVASQPEIMPLSGVIDDGEIDESGLS-DVSEKALIDRSRQPLSRIDGP-PE 236

Query: 526 QSDLRLLHMIEINEERFAKILRKWARSEIE 555
              +RL  +I   +E   +ILR W   E E
Sbjct: 237 DPVVRLRSLIGQRQEETVEILRNWLEGEEE 266


>gi|226327718|ref|ZP_03803236.1| hypothetical protein PROPEN_01591 [Proteus penneri ATCC 35198]
 gi|225203422|gb|EEG85776.1| hypothetical protein PROPEN_01591 [Proteus penneri ATCC 35198]
          Length = 158

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 44/110 (40%), Positives = 67/110 (60%), Gaps = 2/110 (1%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            ++ SP Y  LY  L   D   I   L++ N+ +R+S NGS+I VP + V + R+ LA  
Sbjct: 46  LWLQSPDYKVLYSNLSDKDGGEIVTQLTQMNVPYRLSQNGSAIMVPDNQVHELRLKLAQA 105

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
           GLP   + +G+EL DK   FG++ F ++I   RALEGE+ARTI+++  + 
Sbjct: 106 GLPKGGA-AGFELLDKE-KFGISQFSEQINYQRALEGELARTIETLGPVQ 153


>gi|291484172|dbj|BAI85247.1| hypothetical protein BSNT_02643 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 196

 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 79/158 (50%), Gaps = 4/158 (2%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M + ++  +F+K+ + L +   +++ S +   I++ +    F ++     LY  L   + 
Sbjct: 1   MQMKNKTSEFWKNRSKLQK---ILMVSALAAIIIIGIIISVFASNSKMAPLYKDLSAEEA 57

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +I   L    +   +S+ G+ ISVP   V   ++ +AA+GLP + S   Y  F +   F
Sbjct: 58  GQIKKELDAKKVPNELSNGGTVISVPEDQVDSLKVQMAAEGLPKTGS-IDYSFFGQNAGF 116

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
           GLT    ++ +V+A + E++  I  + GI  ++V I +
Sbjct: 117 GLTDNEFDMVKVKATQTELSNLINEMDGIKNSKVMITL 154


>gi|315301967|ref|ZP_07872962.1| flagellar M-ring protein FliF [Listeria ivanovii FSL F6-596]
 gi|313629662|gb|EFR97800.1| flagellar M-ring protein FliF [Listeria ivanovii FSL F6-596]
          Length = 380

 Score =  149 bits (377), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 73/403 (18%), Positives = 148/403 (36%), Gaps = 52/403 (12%)

Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM----ERNILGKSLSI 233
           +       +    I+  V+AAVPN+   DV ++D+   +++  +       +     + I
Sbjct: 5   KNNQTLTSEQVLGIQRTVSAAVPNVASEDVAIIDTKNGVISEADTSKEEGSSAYKNEVDI 64

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSK 292
             AI   ++ +I   L++   +DNFR      +N D  +     Y  D KV  + +  S 
Sbjct: 65  QNAIGKNVKTDIEGTLSSIFALDNFRVNTSVTVNFDEIKQNTERYPNDGKVRSNQKDTST 124

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
           D  +  T+  ES      ++P+ ++       +   ++K  E +NYE+++          
Sbjct: 125 DTSKGSTNTTESGTAANADVPNYTEENGGDTNTY-TSEKSSETTNYELDSTIQEIKKHP- 182

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS------------ 400
            L + ++ V V++  L                +AE  K V  + G+              
Sbjct: 183 ALAKTNVVVWVDQQALNNNGV----------DMAEFTKAVGVSAGLTPNMATPEGAEEGA 232

Query: 401 --------RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452
                   + GD +TI  + FL+NQ         +           +   L+F +    +
Sbjct: 233 TPTFEGTFQNGD-VTIMPIQFLDNQTPVEKDAGKTPEPASKAWIWWLAGGLLFAIIAAGI 291

Query: 453 TFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS 512
               +  L+R   +++A + E      +   P   A+   +MP D+   +          
Sbjct: 292 IGYIIF-LKRKEQLEEALEPEE-----VDYIPAEEAI---VMPEDHPDFNFQTDAFHLSE 342

Query: 513 RNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
             L++R      +    +L  M + +  R A +++KW     E
Sbjct: 343 PELKAR-----KESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 380


>gi|313634347|gb|EFS00945.1| flagellar M-ring protein FliF [Listeria seeligeri FSL N1-067]
          Length = 380

 Score =  147 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 72/403 (17%), Positives = 148/403 (36%), Gaps = 52/403 (12%)

Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM----ERNILGKSLSI 233
           +       +    I+  V+AAVPN+   DV ++D+   +++  +       +     + I
Sbjct: 5   KNNQTLTSEQVLGIQRTVSAAVPNVASEDVAIIDTKNGVISEADTTKEEGSSAYKNEVDI 64

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSK 292
             AI   ++ +I   L++   +DNFR      +N D  +     Y  D KV  + +  S 
Sbjct: 65  QNAIGKNVKTDIEGTLSSIFALDNFRVNTSVTVNFDEIKQNTERYPNDGKVRSNQKDTST 124

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
           D  +  T+  ES      ++P+ ++       +   ++K  E +NYE+++          
Sbjct: 125 DTSKGSTNTTESGTAANADVPNYTEENGGDTNTY-TSEKSSETTNYELDSTIQEIKKHP- 182

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS------------ 400
            L + ++ V V++  L                +AE  K V  + G+              
Sbjct: 183 ALAKTNVVVWVDQQSLNNNGV----------DMAEFTKAVGVSAGLTPNMATPEGAEEGA 232

Query: 401 --------RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452
                   + GD +TI  + FL+NQ         +           +   L+F +    +
Sbjct: 233 TPTFEGTFQNGD-VTIMPIQFLDNQAPVEKDTGKTPESASKAWIWWLAGGLLFAIIAAGI 291

Query: 453 TFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS 512
               +  L+R   +++A + E      +   P   A+   ++P D+   +          
Sbjct: 292 IGYIIF-LKRKEQLEEALEPEE-----VDYIPAEEAI---VVPEDHPDFNFQTDAFHLSE 342

Query: 513 RNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
             L++R      +    +L  M + +  R A +++KW     E
Sbjct: 343 PELKAR-----KESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 380


>gi|313639030|gb|EFS04021.1| flagellar M-ring protein FliF [Listeria seeligeri FSL S4-171]
          Length = 380

 Score =  146 bits (369), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 72/403 (17%), Positives = 148/403 (36%), Gaps = 52/403 (12%)

Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM----ERNILGKSLSI 233
           +       +    I+  V+AAVPN+   DV ++D+   +++  +       +     + I
Sbjct: 5   KNNQTLTSEQVLGIQRTVSAAVPNVASEDVAIIDTKNGVISEADTTKEEGSSAYKNEVDI 64

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR-LSK 292
             AI   ++ +I   L++   +DNFR      +N D  +     Y  D KV  + +  S 
Sbjct: 65  QNAIGKNVKTDIEGTLSSIFALDNFRVNTSVTVNFDEIKQNTERYPNDGKVRSNQKDTST 124

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
           D  +  T+  ES      ++P+ ++       +   ++K  E +NYE+++          
Sbjct: 125 DTSKGSTNTTESGTASNADVPNYTEENGGDTNTY-TSEKSSETTNYELDSTIQEIKKHP- 182

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS------------ 400
            L + ++ V V++  L                +AE  K V  + G+              
Sbjct: 183 ALAKTNVVVWVDQQALNNNGV----------DMAEFTKAVGVSAGLTPNMATPEGAEEGA 232

Query: 401 --------RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452
                   + GD +TI  + FL+NQ         +           +   L+F +    +
Sbjct: 233 TPTFEGTFQNGD-VTIMPIQFLDNQAPVEKDTGKTPESASKAWIWWLAGGLLFAIIAAGI 291

Query: 453 TFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS 512
               +  L+R   +++A + E      +   P   A+   ++P D+   +          
Sbjct: 292 IGYIIF-LKRKEQLEEALEPEE-----VDYIPAEEAI---VVPEDHPDFNFQTDAFHLSE 342

Query: 513 RNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
             L++R      +    +L  M + +  R A +++KW     E
Sbjct: 343 PELKAR-----KESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 380


>gi|1184298|gb|AAA87352.1| flagellar MS-ring protein [Borrelia burgdorferi]
          Length = 475

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 73/498 (14%), Positives = 157/498 (31%), Gaps = 67/498 (13%)

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
            R  L  + L     +        ++ + +T F + I   R++   + + I ++  + A 
Sbjct: 1   MRAILVREELVPVHMDPWA--LFDIDRWTITDFERSINLRRSITRAVEQHIVALDDVDAV 58

Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAIN-----PSVYKSAEAIRHLVAA-AVPNLDMGD 206
            V++VMP+   F++      ASV I          +  K  E +  L+        +  +
Sbjct: 59  SVNLVMPEKALFKESQEPVKASVRITPRPLVLIFITNRKKVEGLVKLIQPICHEGFESDN 118

Query: 207 VTVLDSTGKLLTANEMER-----NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR-S 260
           + ++D++G +L            ++  K   +    +  +   I+ AL+  L VD F  +
Sbjct: 119 IAIVDNSGTILNDFSNLDGIDRIDLAEKERKLKLKYEAMLRGEIDSALSKVLSVDRFMIA 178

Query: 261 AVVAELNMDTQQIREIVYDP------DSKV-----------ERSIRLSKDAQRSETSQPE 303
            V  +L+   +      Y P      D K              S +  K   + +   P 
Sbjct: 179 RVNVKLDTSKETTESKEYAPIELQSQDPKASYNTRKVSDSTIISSQTQKKEYQGQGYSPW 238

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
                E N P        +       ++ +E  N  +N K   +  +  ++  +S+ + V
Sbjct: 239 GPPGQEGNTPPEYQDLSDITG---KYNESQEIKNVALNEKKSTSEKEPARIVGVSLGIFV 295

Query: 364 NKGR-----------LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
           +              +   + +   +      +  I  ++ ++      RGD+IT+ ++ 
Sbjct: 296 DGIWNFVYDEKGDFVIENGMRKREYKPMALEEIKNIEDVLQSSFEYKPERGDSITVRNIS 355

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F     F     +  F     ++F  + + +  L+  +   F           I    + 
Sbjct: 356 FDRMNEFREID-ENYFASERFKYFLFIASIVFSLLILVFTIFF---------AISRELER 405

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
               +               LM   +                LQS               
Sbjct: 406 RRRLREEELAKQAHLRRQQALMDGGDDIGVDDVVGGIREGDELQSNAEL----------- 454

Query: 533 HMIEINEERFAKILRKWA 550
            +     E  AK++R W 
Sbjct: 455 -LAREKPEDVAKLIRTWL 471


>gi|260438808|ref|ZP_05792624.1| flagellar M-ring protein FliF [Butyrivibrio crossotus DSM 2876]
 gi|292808797|gb|EFF68002.1| flagellar M-ring protein FliF [Butyrivibrio crossotus DSM 2876]
          Length = 534

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 86/578 (14%), Positives = 202/578 (34%), Gaps = 80/578 (13%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           AI +++  F+       R   ++  ++ +V I++ +     +       L      ++V 
Sbjct: 7   AIWEKIKNFWLKFNKKQR---ILFVTIFVVIIVVIIVLSKVIGKKDMVKLRACSNETEVV 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK-VNSF 120
            I   L++ NI   + +  + I V  S   +A++ L +  +    S++GY L D   +S 
Sbjct: 64  EIRNLLNDNNISATVDEYNN-IFVDDSDYVEAKLVLGSNNI----SSAGYTLDDAVSSSL 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM-GSFRKIGARPTASVMIRA 179
             T  + +      LE +  + ++S+  I +ARV+I  P+   S          + ++  
Sbjct: 119 STTETVMKEKYTAYLESKFKQDLESMDAIKSARVNISYPETGNSIFSETQDAKITAVLDL 178

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAI 237
                 + AEAI  L+A  V N +   V ++DS   +L +     +      +  +   +
Sbjct: 179 KKELSDEQAEAIGLLLATNVGNDNTNSVIIVDSQSNVLYSGNKANSSFTSNSTQKVKAML 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           ++ I       + +    ++ +  +  ++N D  ++ +  Y      +  +        S
Sbjct: 239 ENAIIKGAEDLIYSTRLYNDVQIMINLDVNFDNVEVVDHKYIAPDGTDNGLPTHSYVINS 298

Query: 298 ET--SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEI--NTKSIATTHDNYK 353
           E   +        E N        +    + +    K   S Y+   N     T+    +
Sbjct: 299 EGQLATAGGNPGTESNDSDTDYDII----NSDGKSSKYTLSKYDWVQNEVITTTSKTPGE 354

Query: 354 L--ERLSIAVV-----------------VNKGRLTEVLGRSADQGKIDSYLAEINKIVSA 394
           +  +  S+A+V                 ++     E    +++  +       I   V+ 
Sbjct: 355 VNLKNSSMAIVCIKNTILTEEEAEEQGLLDDMTWEEYKQANSEPVETTVQ-DNILNAVAT 413

Query: 395 ATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTF 454
            +GI +     I   +M F + ++ +S                 VI  ++ ++   ++ F
Sbjct: 414 GSGIAAGNVSIIAYNTMTFFDKEVTSSSNP------------WFVIQIILAVLIAGVLIF 461

Query: 455 LGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRN 514
           + + + R                      P++   T   +  +++   +  Q       +
Sbjct: 462 IIIRSTR----------------------PVAVEETEPELSVEDMLATTKQQQPPVEEID 499

Query: 515 LQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
           LQ +  +  +      +   ++ N E  A +LR W   
Sbjct: 500 LQDKSETRKA------IEKFVDENPEAVALLLRNWLNE 531


>gi|87307391|ref|ZP_01089536.1| probable polar flagellar M-ring protein FliF [Blastopirellula
           marina DSM 3645]
 gi|87290131|gb|EAQ82020.1| probable polar flagellar M-ring protein FliF [Blastopirellula
           marina DSM 3645]
          Length = 546

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 95/572 (16%), Positives = 190/572 (33%), Gaps = 58/572 (10%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNL-YVKLEVSDVNR 62
            +Q+   F S T   R    +L  VI+           F        L    ++ +D   
Sbjct: 8   FEQIKDLFFSMTPGSRIIAGLLIVVIVASFAFLFQGGMF--EHDAALLAGAAVDPADQKA 65

Query: 63  ISVALSEANID-FRISDNGSSISVPSSMVGKARIHLAAQG-LPSSSSNSGYELFDKVNSF 120
           +  A +   +D +RI   GS I +P +   +    +     +P     S  +  D  N F
Sbjct: 66  VLAAFAGEGLDDYRIE--GSQIYIPRAKRAEYVAAMVKHNAIPPEFHESMEDAVDNANPF 123

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
             +   +   +  A E ++A  ++ + GI  A VH  + D G F +     TASV++R +
Sbjct: 124 -ESEQHRSDRQKIAKEKDLALVLRKMRGIEFASVHYDVEDKGGFPRRKVY-TASVVVRPL 181

Query: 181 NPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQ 238
                      +IR+ VA ++  L    V+V D   +   + + E        +  Q  +
Sbjct: 182 GSEEIDQALVRSIRNYVAYSIAGLSSEHVSVTDLNSRRTYSGDTENPAEDAYAARKQFFE 241

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
           +  +  I  AL      D     V  EL+    Q  E +      +       K  + S+
Sbjct: 242 NSWQDKIAAALNYI---DGVNVTVNVELDPKMNQREERLEHGARPIALLTSAQKRTESSK 298

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
             +      +    P+        P    + ++  E++    +   + +   +   +++ 
Sbjct: 299 VPKEGGRPGLAAQAPNQQAELTTAPARESSMEESSEETASVTDKTLMLSETASLTPQQVR 358

Query: 359 IAVVVNKGRL-----TEVLGRSADQGKIDSY--LAEINKIVSAATG-------INSRRGD 404
           + V V +         +       Q        L +I + V  +              GD
Sbjct: 359 VVVTVPQDYYAGIWNKQNPPALGAQPTTPDAGVLKKIEEEVKKSIESQVVTLLPPQPPGD 418

Query: 405 ----TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460
                + +TS+   +        +  + +  L  ++ TV      ++G  L   L L ++
Sbjct: 419 DPYPQVHVTSVTRTDQPTLAEPALADTAILWLGANWQTV-----AMIGVGLFALLMLRSM 473

Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520
            R               S    P I +++     P +    D+ +       R  ++  N
Sbjct: 474 VR---------------SQPDEPKIDNSIRLATPPQEEEEDDAGDMSGMLKKRFTKNSPN 518

Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
                     L+ M+  + +  A IL+ W  +
Sbjct: 519 LKDE------LIEMVREDPDTAAGILKNWIGA 544


>gi|171915741|ref|ZP_02931211.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Verrucomicrobium spinosum DSM 4136]
          Length = 248

 Score =  139 bits (351), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 80/182 (43%), Gaps = 5/182 (2%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSM 89
           I L +     V+      L+  L   + N +  AL E ++    +    +  ++ V S  
Sbjct: 7   ITLCLCGLLLVSCAKQVPLFSDLREEEANEVMAALMERDVACTKTPGKEDKWALQVKSED 66

Query: 90  VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149
              A   L A GLP  S     E+F K +    +   + +  + AL  E++ T   I G+
Sbjct: 67  FPFAMQTLQAMGLPRQSFQRMGEIFQK-SGLVSSPTEERVRFIYALSQELSETFMKIDGV 125

Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINP-SVYKSAEAIRHLVAAAVPNLDMGDVT 208
           VAARVHI +PD     +     +A+V I+     ++  + + +++LV  +V  L   +V 
Sbjct: 126 VAARVHIALPDTDPLAEETNPASAAVFIKCRPGYNLANNTQDLKNLVTRSVEGLKPENVE 185

Query: 209 VL 210
           ++
Sbjct: 186 LV 187


>gi|170738287|ref|YP_001779547.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Burkholderia cenocepacia MC0-3]
 gi|169820475|gb|ACA95057.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia cenocepacia MC0-3]
          Length = 287

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 89/206 (43%), Gaps = 10/206 (4%)

Query: 19  RTRILILASV-ILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS 77
           R RI+  ASV   V + + +             LY  L   D N I  AL +A ID +  
Sbjct: 4   RIRIVGRASVHACVVLCVALCIALAGCK---QELYGNLSEQDCNEIVAALLQAGIDAKKE 60

Query: 78  --DNGSSIS--VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
             D G + S  V  + + +A   L   GLP+   +   +LF K      T   + +  + 
Sbjct: 61  SADGGKTWSAKVDDAHIVQAMNVLREHGLPAHKYDDLGDLFKKD-GLVSTPTEERVRFIY 119

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIR 192
            +  E+++T+  I G++ ARVHIV+PD           +ASV I+ +  +     E  I+
Sbjct: 120 GVSQELSKTLSQIDGVMVARVHIVLPDNDPLAMHVKPSSASVFIKYLPTANLAMIEPQIK 179

Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLT 218
           +LV  +V  L    V++    G  L 
Sbjct: 180 NLVVHSVEGLSYDKVSLTAVAGSPLD 205


>gi|331009141|gb|EGH89197.1| type III secretion component protein HrcJ [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 444

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 4/162 (2%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
            +L+  L   D N +   L++ +ID R  +   G  ++V +S + +A   L A GLP  S
Sbjct: 23  TDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQS 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             S  ++F K      T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +
Sbjct: 83  RASLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141

Query: 167 IGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDV 207
                +A+V I+        S    I+ +VA+++P +     
Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSAQSA 183


>gi|82795289|gb|ABB91658.1| type III secretion protein HrcJ [Pseudomonas syringae pv. tagetis]
          Length = 268

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 4/182 (2%)

Query: 29  ILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVP 86
            L   +L M            +L+  L   D N +   L++ +ID R  +   G  ++V 
Sbjct: 3   FLSAGLLLMCILMLGGCSDDTDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVA 62

Query: 87  SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146
           +S + +A   L A GLP  S  S  E+F K      T   +    + AL  E+  T+  I
Sbjct: 63  TSDMNRAVRVLDAAGLPRHSRTSLGEIFKKEGVI-STPLEERARYIYALSQELEATLSQI 121

Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMG 205
            G++ ARVH+V+P+  +  +     +A+V I+        S    I+ +VA+++P +   
Sbjct: 122 DGVIVARVHVVLPERIAPGEPVQPASAAVFIKHSASLDPDSVRGRIQQMVASSIPGMSTQ 181

Query: 206 DV 207
             
Sbjct: 182 SA 183


>gi|160880849|ref|YP_001559817.1| flagellar M-ring protein FliF [Clostridium phytofermentans ISDg]
 gi|160429515|gb|ABX43078.1| flagellar M-ring protein FliF [Clostridium phytofermentans ISDg]
          Length = 531

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 91/568 (16%), Positives = 185/568 (32%), Gaps = 71/568 (12%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           +LL+ +K  +   +  I+ + S     I   +   F +    Y  L    +    ++   
Sbjct: 11  RLLEIWKKYSKKQKIIIISVVSS---VICALLLLIFLLGRTEYVELIKLEDTKTASQAID 67

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L E  I +++ D+G ++ V +S   +A++ +A   + S +  S  +L +   S   T++
Sbjct: 68  ILKENGIAYQLKDDGVTVLVDNSKKTEAKLLIADSEIASKAKLSLEQLLNNDMS--TTNY 125

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVH-IVMPDMGSFRKIGARPTASVMIRAINPSV 184
            ++       +G++   ++   GI  AR+  +      S  +     + S+ +   +   
Sbjct: 126 DKQTKLHLYYQGDLEELLKKQEGIDDARISYLPSDKRSSILEQEKEISCSIFLTINSKFK 185

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIE 242
             SAEAI   VA ++ N     V V+D  G LL     + E     K+L   QA+  +  
Sbjct: 186 KSSAEAIAITVANSLGNETTNKVKVIDQYGNLLYNGPEDEESEYTNKNLEFRQAVLGDYT 245

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
             + +      G D    +   ++N D        Y     +E+ +  S     SE    
Sbjct: 246 ERVVR-FGLMNGFDYVEPSFALDINFDKTTEEIREYFAGEGLEQGLYQSYQKISSENQGS 304

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
                +     +              +   E   +Y  + K   T      +   +  V 
Sbjct: 305 NGD--IPGTDSNTDTDYYIQTEKSGKSSYDELNISYLPSEKLTKTLKGWGIVNVDTSKVA 362

Query: 363 VNKGRLTEVLGRSAD------------------QGKIDSYLAEINKIVSAATGINSRRGD 404
           +   R+ ++                        + K      E   + + ATG+N     
Sbjct: 363 IALKRVKDIKEEDLKLLGLLNGTTFEEYVLNNSEPKQLDVSKEYYTLFANATGLNEN--- 419

Query: 405 TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
                ++  +  ++ N      S  D+  +    +I A + L   + V F G+  +    
Sbjct: 420 -----NISLIMWEVPNFIPTPKS--DVNWQLILEIILAALILGLLIFVVFRGMAPV---- 468

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
                         +    P  S         +N +LD                I     
Sbjct: 469 -------------EVTEIEPELSVEQLLATTKENQSLDD---------------IEFSEK 500

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARS 552
            ++   +   ++ N E  A +LR W   
Sbjct: 501 SETRRMIEKFVDENPEAVANLLRNWLTD 528


>gi|330937050|gb|EGH41134.1| type III secretion protein HrcJ [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 229

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 80/182 (43%), Gaps = 4/182 (2%)

Query: 29  ILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVP 86
            L   +L +            +L+  L   D N +   L++ +ID R  +   G  ++V 
Sbjct: 3   FLSAGLLLICMVLLGGCSDETDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVA 62

Query: 87  SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146
           +S + +A   L A GLP  S  S  ++F K      T   +    + AL  E+  T+  I
Sbjct: 63  TSDMNRAVRVLNAAGLPRQSRASLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQI 121

Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMG 205
            G++ ARVH+V+P+  +  +     +A+V I+        S    I+ +VA+++P +   
Sbjct: 122 DGVIVARVHVVLPERIAPGEPVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQ 181

Query: 206 DV 207
             
Sbjct: 182 SA 183


>gi|296103639|ref|YP_003613785.1| flagellar M-ring protein FliF [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295058098|gb|ADF62836.1| flagellar M-ring protein FliF [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 268

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 98/265 (36%), Gaps = 35/265 (13%)

Query: 299 TSQPESAVTVEQNMP----------HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           ++ P +  T     P            +        +    ++ +E +N+E++   I T 
Sbjct: 27  SNTPPAPATAPLTQPLNTPADDKKEKTTSNSANREPAQPYNNRSDETTNFEVDRTLIHTK 86

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
            +  +++RLS+AVV+N     E           ++ L  IN +V  A G N+ RGD++ I
Sbjct: 87  SNAGRIQRLSVAVVINHLPQGE---EGKPGPISEAELTRINALVKEAIGFNASRGDSVNI 143

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
            +  F  N +           D   R +A ++    +LV  ++   +     R+L     
Sbjct: 144 LNSAF--NGVVEEPVPPFWEQD---RFYALLMAIARYLVIAIIAWVMW----RKLVQPAW 194

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
            +  E   + +                   IA      +  +  R  Q R+++ ++ Q  
Sbjct: 195 IRHQETTLRRLEMEKEAREEE---------IAAKKRAAEKINRDR-AQQRVDTELNGQ-- 242

Query: 529 LRLLHMIEINEERFAKILRKWARSE 553
            +L  + E      A ++R+W   E
Sbjct: 243 -QLRELAEQEPRVIALVIRQWMSKE 266


>gi|84502358|ref|ZP_01000494.1| flagellar M-ring protein [Oceanicola batsensis HTCC2597]
 gi|84389170|gb|EAQ01967.1| flagellar M-ring protein [Oceanicola batsensis HTCC2597]
          Length = 246

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 22/244 (9%)

Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINK 390
           K +E  NYEI      T  +  +++R+S+AV+VN     +  G  A + + +  L  +N+
Sbjct: 1   KTDEVVNYEIGNTQSETVREPGEIQRISVAVLVNGIYNIQDNGEVAYEERSEEELQRLNQ 60

Query: 391 IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL 450
           +V AA G + +RGD++++ S+ F++  +     V  SF+ IL  +   ++ A+  L    
Sbjct: 61  LVQAAIGFDEQRGDSVSVDSLRFMDYSMDVGEPVSTSFVQILKDNMMAILRAVFALAVIA 120

Query: 451 LVTFLGLHALR-----------------RLHNIDDAKKGEVGGKSILSP---PPISSAVT 490
            +   G+  L                   L   +   +GE+      +P   P    A  
Sbjct: 121 AILVFGVRPLVARALPERTEGEDQSDVPALPGGEAQAEGELAADGDRAPQGLPAPQQARP 180

Query: 491 TGLMPNDNIALDSSNQDIFSHSRNL--QSRINSYVSKQSDLRLLHMIEINEERFAKILRK 548
                   ++         +   +L     +N  V K     +  ++E   +   K+++ 
Sbjct: 181 RRAGSGGAVSGTVLEPISMAGPDDLVTLGAVNGGVHKGWINTVSGLVEHQPDDSLKVVKT 240

Query: 549 WARS 552
           W   
Sbjct: 241 WLAE 244


>gi|330975997|gb|EGH76063.1| flagellar MS-ring protein [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 153

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 37/130 (28%), Positives = 61/130 (46%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           + F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L
Sbjct: 24  MSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + ANI++ +  N  ++ V S  V +ARI LA  G   + +N G+E+ DK    G + FM+
Sbjct: 84  TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGGVQNDANIGFEILDKDQGLGTSQFME 143

Query: 128 EITRVRALEG 137
                R LEG
Sbjct: 144 ATRYRRGLEG 153


>gi|289678028|ref|ZP_06498918.1| type III secretion protein HrcJ [Pseudomonas syringae pv. syringae
           FF5]
 gi|330895842|gb|EGH28130.1| type III secretion protein HrcJ [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 268

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 80/182 (43%), Gaps = 4/182 (2%)

Query: 29  ILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVP 86
            L   +L +            +L+  L   D N +   L++ +ID R  +   G  ++V 
Sbjct: 3   FLSAGLLLICMVLLGGCSDETDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVA 62

Query: 87  SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146
           +S + +A   L A GLP  S  S  ++F K      T   +    + AL  E+  T+  I
Sbjct: 63  TSDMNRAVRVLNAAGLPRQSRASLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQI 121

Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMG 205
            G++ ARVH+V+P+  +  +     +A+V I+        S    I+ +VA+++P +   
Sbjct: 122 DGVIVARVHVVLPERIAPGEPVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQ 181

Query: 206 DV 207
             
Sbjct: 182 SA 183


>gi|330975852|gb|EGH75918.1| type III secretion protein HrcJ [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 268

 Score =  133 bits (336), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 80/182 (43%), Gaps = 4/182 (2%)

Query: 29  ILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVP 86
            L   +L +            +L+  L   D N +   L++ +ID R  +   G  ++V 
Sbjct: 3   FLSAGLLLICMVLLGGCSDETDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVA 62

Query: 87  SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146
           +S + +A   L A GLP  S  S  ++F K      T   +    + AL  E+  T+  I
Sbjct: 63  TSDMNRAVRVLNAAGLPRQSRASLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQI 121

Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMG 205
            G++ ARVH+V+P+  +  +     +A+V I+        S    I+ +VA+++P +   
Sbjct: 122 DGVIVARVHVVLPERIAPGEPVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQ 181

Query: 206 DV 207
             
Sbjct: 182 SA 183


>gi|66044446|ref|YP_234287.1| type III secretion protein HrcJ [Pseudomonas syringae pv. syringae
           B728a]
 gi|63255153|gb|AAY36249.1| type III secretion protein HrcJ [Pseudomonas syringae pv. syringae
           B728a]
          Length = 268

 Score =  133 bits (336), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 80/182 (43%), Gaps = 4/182 (2%)

Query: 29  ILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVP 86
            L   +L +            +L+  L   D N +   L++ +ID R  +   G  ++V 
Sbjct: 3   FLSAGLLLICMVLLGGCSDETDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVA 62

Query: 87  SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146
           +S + +A   L A GLP  S  S  ++F K      T   +    + AL  E+  T+  I
Sbjct: 63  TSDMNRAVRVLNAAGLPRQSRASLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQI 121

Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMG 205
            G++ ARVH+V+P+  +  +     +A+V I+        S    I+ +VA+++P +   
Sbjct: 122 DGVIVARVHVVLPERIAPGEPVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQ 181

Query: 206 DV 207
             
Sbjct: 182 SA 183


>gi|330950834|gb|EGH51094.1| type III secretion protein HrcJ [Pseudomonas syringae Cit 7]
          Length = 268

 Score =  133 bits (336), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 44/180 (24%), Positives = 80/180 (44%), Gaps = 4/180 (2%)

Query: 29  ILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVP 86
            L   +L +            +L+  L   D N +   L++ +ID R  +   G  ++V 
Sbjct: 3   FLSAGLLLICMVLLGGCSDETDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVA 62

Query: 87  SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146
           +S + +A   L A GLP  S  S  ++F K      T   +    + AL  E+  T+  I
Sbjct: 63  TSDMNRAVRVLNAAGLPRQSRASLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQI 121

Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMG 205
            G++ ARVH+V+P+  +  +     +A+V I+        S    I+ +VA+++P +   
Sbjct: 122 DGVIVARVHVVLPERIAPGEPVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQ 181


>gi|818896|gb|AAB05080.1| HrcJ [Pseudomonas syringae pv. syringae]
          Length = 268

 Score =  133 bits (336), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 44/180 (24%), Positives = 80/180 (44%), Gaps = 4/180 (2%)

Query: 29  ILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVP 86
            L   +L +            +L+  L   D N +   L++ +ID R  +   G  ++V 
Sbjct: 3   FLSAGLLLICMVLLGGCSDETDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVA 62

Query: 87  SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146
           +S + +A   L A GLP  S  S  ++F K      T   +    + AL  E+  T+  I
Sbjct: 63  TSDMNRAVRVLNAAGLPRQSRASLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQI 121

Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMG 205
            G++ ARVH+V+P+  +  +     +A+V I+        S    I+ +VA+++P +   
Sbjct: 122 DGVIVARVHVVLPERIAPGEPVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQ 181


>gi|332526232|ref|ZP_08402363.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Rubrivivax benzoatilyticus JA2]
 gi|332110068|gb|EGJ10696.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Rubrivivax benzoatilyticus JA2]
          Length = 239

 Score =  133 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 5/166 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDF---RISDNGSSISVPSSMVGKARIHLAAQGLPSS 105
           + LY +L+  + N +   L+ A ID    R+     ++ V      +A   L A G P  
Sbjct: 33  EELYAQLDEREANEMVALLTHAGIDAAKQRVDGGQFALRVGGGEFARAVQVLHAAGYPRE 92

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
              S   +F K   F  T   +    + AL  E+A T+Q+I G+V ARVH+ +P+   F 
Sbjct: 93  GHESLGTMF-KKEGFVTTQLEERARFMHALSQELAGTLQNIDGVVLARVHLAVPEKRRFA 151

Query: 166 KIGARPTASVMIRAINP-SVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
           +      A+V ++      +     +I+ LV  A+  L    VTV+
Sbjct: 152 EKPEPSAAAVFLKVRPGVDLAPQIGSIKALVVNAIEGLPYEQVTVV 197


>gi|330969118|gb|EGH69184.1| type III secretion protein HrcJ [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 268

 Score =  133 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 44/180 (24%), Positives = 80/180 (44%), Gaps = 4/180 (2%)

Query: 29  ILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVP 86
            L   +L +            +L+  L   D N +   L++ +ID R  +   G  ++V 
Sbjct: 3   FLSAGLLLICMVLLGGCSDETDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVA 62

Query: 87  SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146
           +S + +A   L A GLP  S  S  ++F K      T   +    + AL  E+  T+  I
Sbjct: 63  TSDMNRAVRVLNAAGLPRQSRASLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQI 121

Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMG 205
            G++ ARVH+V+P+  +  +     +A+V I+        S    I+ +VA+++P +   
Sbjct: 122 DGVIVARVHVVLPERIAPGEPVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQ 181


>gi|254706489|ref|ZP_05168317.1| flagellar MS-ring protein [Brucella pinnipedialis M163/99/10]
          Length = 207

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 82/196 (41%), Gaps = 5/196 (2%)

Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVS 427
           L            +D  + +I  +V+ A G+N+ RGD I +T+++FL+    +   V   
Sbjct: 3   LQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGADMEPVSAP 62

Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA--KKGEVGGKSILSPPPI 485
           + D L R   +  NAL  L    L+ + GL  L R  N+  A  +        + +P  I
Sbjct: 63  WTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAGEVATPNFI 122

Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545
             A + G      I   ++  D    S    S +   +   + LRL  MIE++EER A +
Sbjct: 123 GGAESVGEGVQAVIGGPAAYADQMKTS---LSDLRQRMRMPAKLRLEQMIEMDEERVAAV 179

Query: 546 LRKWARSEIEDRYTQH 561
           L++W       R    
Sbjct: 180 LKQWIHETASGREADP 195


>gi|261313943|ref|ZP_05953140.1| flagellar MS-ring protein FliF [Brucella pinnipedialis M163/99/10]
 gi|261302969|gb|EEY06466.1| flagellar MS-ring protein FliF [Brucella pinnipedialis M163/99/10]
          Length = 192

 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 49/183 (26%), Positives = 81/183 (44%), Gaps = 5/183 (2%)

Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440
           +D  + +I  +V+ A G+N+ RGD I +T+++FL+    +   V   + D L R   +  
Sbjct: 1   MDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGADMEPVSAPWTDTLLRQSGSYA 60

Query: 441 NALVFLVGTLLVTFLGLHALRRLHNIDDA--KKGEVGGKSILSPPPISSAVTTGLMPNDN 498
           NAL  L    L+ + GL  L R  N+  A  +        + +P  I  A + G      
Sbjct: 61  NALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAGEVATPNFIGGAESVGEGVQAV 120

Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIEDRY 558
           I   ++  D    S    S +   +   + LRL  MIE++EER A +L++W       R 
Sbjct: 121 IGGPAAYADQMKTS---LSDLRQRMRMPAKLRLEQMIEMDEERVAAVLKQWIHETASGRE 177

Query: 559 TQH 561
              
Sbjct: 178 ADP 180


>gi|260775676|ref|ZP_05884572.1| type III secretion bridge between inner and outermembrane
           lipoprotein (yscJ,HrcJ,EscJ PscJ) [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260608092|gb|EEX34261.1| type III secretion bridge between inner and outermembrane
           lipoprotein (yscJ,HrcJ,EscJ PscJ) [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 268

 Score =  130 bits (326), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 55/192 (28%), Positives = 89/192 (46%), Gaps = 15/192 (7%)

Query: 30  LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPS 87
           L  + + +             L   L   D N +  ALS+ NI    R+  NG +I V S
Sbjct: 10  LTRVFMGILLVLLTGCSEQVELNSGLLERDANAVLSALSDKNISAEKRMDKNGVTILVNS 69

Query: 88  SMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSIS 147
           + +GKA   L+  GLP +  +S   +F        T   ++   + AL  E+  T+  I 
Sbjct: 70  NQMGKALRVLSIAGLPKAPHDSLGSMFPNDGVI-STPLEEQARYIHALSQELEYTLSEID 128

Query: 148 GIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNLDM 204
           G+V ARVH+V+P+  +  +  +  +ASV I+    ++P V K    I+ LVA ++P L  
Sbjct: 129 GVVLARVHVVLPEKIAPGEPISPASASVFIKHQTTLDPDVIK--NRIQRLVAGSIPGL-- 184

Query: 205 GDVTVLDSTGKL 216
                +D+  KL
Sbjct: 185 -----IDNKNKL 191


>gi|307944360|ref|ZP_07659701.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Roseibium sp. TrichSKD4]
 gi|307772706|gb|EFO31926.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Roseibium sp. TrichSKD4]
          Length = 259

 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 6/188 (3%)

Query: 26  ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD--NGSSI 83
           AS +L   +L               LY  L   + N+I+  L +A I        +G SI
Sbjct: 4   ASAVLRSAILLACLFILAGCK--VELYSNLSEQEANQIAATLIDAGISVDKEKLRDGVSI 61

Query: 84  SVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTI 143
            V  S    A   L   GLP+    +  E+F K +    +   ++   V AL  E+  TI
Sbjct: 62  LVADSEFANAVNLLNENGLPARRYQNMGEIFQK-SGIVSSPTEEKARFVFALSQELENTI 120

Query: 144 QSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS-VYKSAEAIRHLVAAAVPNL 202
             I G+++ARVH+V+P+     +     +AS+ +R +    V K    I+ LV+ ++  L
Sbjct: 121 AEIDGVLSARVHVVLPEEDILGRQTEPSSASLFVRHVEGVPVEKLIPRIKMLVSNSIEGL 180

Query: 203 DMGDVTVL 210
               V+V+
Sbjct: 181 VYERVSVV 188


>gi|289623695|ref|ZP_06456649.1| type III secretion component protein HrcJ [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289647631|ref|ZP_06478974.1| type III secretion component protein HrcJ [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330871299|gb|EGH06008.1| type III secretion component protein HrcJ [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 268

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 4/162 (2%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
            +L+  L   D N +   L++ +ID R  +   G  ++V +S + +A   L A GLP  S
Sbjct: 23  TDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQS 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             S  ++F K      T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +
Sbjct: 83  RASLGDIFKKEGVI-STPLEERARYIYALSQELESTLSQIDGVIVARVHVVLPERIAPGE 141

Query: 167 IGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDV 207
                +A+V I+        S    I+ +VA+++P +     
Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSAQSA 183


>gi|333003034|gb|EGK22588.1| flagellar M-ring protein domain protein [Shigella flexneri VA-6]
          Length = 240

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 44/264 (16%), Positives = 88/264 (33%), Gaps = 32/264 (12%)

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTD-----KKEEQSNYEINTKSIATTHDNYK 353
           ++QP  A     + P  +        S  +       ++ E SNYE++     T  +   
Sbjct: 2   SNQPAPANNAPISTPPTNQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGD 61

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           ++RLS+AVVVN   L +           +  + +I  +   A G + +RGD++ + +  F
Sbjct: 62  VQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEALTREAMGFSEKRGDSLNVVNSPF 117

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
             +   + G +      +                         L A R L  +  A    
Sbjct: 118 -NSSDESGGALPFWQQQVFIDQL--------------------LAAGRWLLVLLVAWLLW 156

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL--RL 531
                        +  T          ++ + +   S    LQ R  +       +  R+
Sbjct: 157 RKAVRPQLTRRAEAVKTVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQRLGAEVMSQRI 216

Query: 532 LHMIEINEERFAKILRKWARSEIE 555
             M + +    A ++R+W  ++ E
Sbjct: 217 REMSDNDPRVVALVIRQWINNDHE 240


>gi|329889303|ref|ZP_08267646.1| hypothetical protein BDIM_09830 [Brevundimonas diminuta ATCC 11568]
 gi|328844604|gb|EGF94168.1| hypothetical protein BDIM_09830 [Brevundimonas diminuta ATCC 11568]
          Length = 240

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 71/165 (43%), Gaps = 4/165 (2%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDNG--SSISVPSSMVGKARIHLAAQGLPSSS 106
             LY  L   D N +   L    +D   + +G    +        +A   L  +G P  +
Sbjct: 22  QELYGGLTERDANEMVAVLKAQGLDASKTRDGDNWVLKADRGDFSRAVALLHDRGYPRQN 81

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             S  E+F K   F  +   Q +  + AL+ E+ +TI SI G+V ARVHI +P+     +
Sbjct: 82  FASMGEVFQKE-GFVSSPMEQRMRMMYALQQELGQTISSIDGVVQARVHIAVPESDPLAQ 140

Query: 167 IGARPTASVMIRAINP-SVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
                +ASV I+      +     +I+ LV  ++  L    VTV+
Sbjct: 141 EKPPSSASVFIKHRPDYDISAQTGSIKALVVNSIEGLPYDKVTVV 185


>gi|333004042|gb|EGK23576.1| flagellar M-ring protein domain protein [Shigella flexneri K-272]
 gi|333017815|gb|EGK37122.1| flagellar M-ring protein domain protein [Shigella flexneri K-227]
          Length = 240

 Score =  128 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/264 (16%), Positives = 88/264 (33%), Gaps = 32/264 (12%)

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTD-----KKEEQSNYEINTKSIATTHDNYK 353
           ++QP  A     + P  +        S  +       ++ E SNYE++     T  +   
Sbjct: 2   SNQPAPANNAPISTPPTNQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGD 61

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           ++RLS+AVVVN   L +           +  + +I  +   A G + +RGD++ + +  F
Sbjct: 62  VQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEALTREAMGFSEKRGDSLNVVNSPF 117

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
             +   + G +      +                         L A R L  +  A    
Sbjct: 118 -NSSNESGGALPFWQQQVFIDQL--------------------LAAGRWLLVLLVAWLLW 156

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL--RL 531
                        +  T          ++ + +   S    LQ R  +       +  R+
Sbjct: 157 RKAVRPQLTRRAEAVKTVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQRLGAEVMSQRI 216

Query: 532 LHMIEINEERFAKILRKWARSEIE 555
             M + +    A ++R+W  ++ E
Sbjct: 217 REMSDNDPRVVALVIRQWINNDHE 240


>gi|42562013|gb|AAS20455.1| HrcJ [Pseudomonas syringae pv. phaseolicola]
          Length = 268

 Score =  128 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 4/162 (2%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
            +L+  L   D N +   L++ +ID R  +   G  ++V +S + +A   L A GLP  S
Sbjct: 23  TDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQS 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             S  ++F K      T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +
Sbjct: 83  RASLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141

Query: 167 IGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDV 207
                +A+V I+        S    I+ +VA+++P +     
Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSAQSA 183


>gi|9800448|gb|AAF99294.1|AF268940_4 HrcJ [Pseudomonas syringae pv. phaseolicola]
          Length = 268

 Score =  128 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 4/162 (2%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
            +L+  L   D N +   L++ +ID R  +   G  ++V +S + +A   L A GLP  S
Sbjct: 23  TDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQS 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             S  ++F K      T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +
Sbjct: 83  RASLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141

Query: 167 IGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDV 207
                +A+V I+        S    I+ +VA+++P +     
Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSAQSA 183


>gi|71734078|ref|YP_273534.1| type III secretion component protein HrcJ [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|37528863|gb|AAQ92361.1| HrcJ [Pseudomonas syringae]
 gi|71554631|gb|AAZ33842.1| type III secretion component protein HrcJ [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320322966|gb|EFW79056.1| type III secretion component protein HrcJ [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329911|gb|EFW85899.1| type III secretion component protein HrcJ [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330874585|gb|EGH08734.1| type III secretion component protein HrcJ [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 268

 Score =  128 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 4/162 (2%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
            +L+  L   D N +   L++ +ID R  +   G  ++V +S + +A   L A GLP  S
Sbjct: 23  TDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQS 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             S  ++F K      T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +
Sbjct: 83  RASLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141

Query: 167 IGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDV 207
                +A+V I+        S    I+ +VA+++P +     
Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSAQSA 183


>gi|227820519|ref|YP_002824490.1| type III secretion component, RhcJ protein [Sinorhizobium fredii
           NGR234]
 gi|227339518|gb|ACP23737.1| type III secretion component, RhcJ protein [Sinorhizobium fredii
           NGR234]
          Length = 267

 Score =  128 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 77/181 (42%), Gaps = 5/181 (2%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGS-SISVPSSMV 90
            L++A           +LY  L+  + N +   L    I     +  +G  +++V  +  
Sbjct: 13  GLWLALIVVTLQACSVDLYTNLDEREANEMVATLLSKGIAAGRVVQKDGKLTVTVDENEF 72

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
            +A   L   GLP     +   +F +      +   +    + AL  E++RT+  I G++
Sbjct: 73  SEAVTALNMAGLPKQKFATLGSVF-QQEGLVASPVQERAQMIYALSEELSRTVSEIDGVL 131

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209
           +ARVH+V+PD    ++     +ASV IR             I+ LVA ++  L    V+V
Sbjct: 132 SARVHVVLPDNDPLQRNAIPASASVFIRHEAGLDVNPLIPRIKTLVANSISGLTYEKVSV 191

Query: 210 L 210
           +
Sbjct: 192 V 192


>gi|296123331|ref|YP_003631109.1| secretory protein YscJ/FliF family protein [Planctomyces
           limnophilus DSM 3776]
 gi|296015671|gb|ADG68910.1| secretory protein YscJ/FliF family protein [Planctomyces
           limnophilus DSM 3776]
          Length = 532

 Score =  128 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 100/553 (18%), Positives = 195/553 (35%), Gaps = 40/553 (7%)

Query: 17  LGRTRILILASVILVPIMLFMAARFFVNSPHYDNL--YVKLEVSDVNRISVALSEANIDF 74
           +   + + L    L+ +  F    +  N+     L         ++     AL EA +  
Sbjct: 1   MNSAQRISLIVAPLILLAGFGFLYWSNNTSGMVALSWGKVFTTEELIAAEHALMEAGLT- 59

Query: 75  RISDNGSSISVPSSMVGKARIHLAA-QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
                G  + VP++   +    L     +P    +   + ++ ++ F +T   +   R  
Sbjct: 60  DFQRQGRMLLVPAAEKDRYNAALLEFDAMPEDLGSQLLKHYESLSPF-ITEKQRHEMREA 118

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEAI 191
            L  E+A+T+++I  +  ARV I  P+  +        TA+V I         +    +I
Sbjct: 119 MLLKEVAQTLKAIPNVEDARVVIANPNRRNSWSQKGTVTANVTITPKKGRELSTRLVASI 178

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL-SIVQAIQHEIEMNINKALA 250
           R  VA+ VP+L   DVTV D   ++  A +   + L   L   ++ +  + E  I+K+L+
Sbjct: 179 RAAVASMVPDLKTSDVTVFDPVNEVTYAGDAADDPLSSQLVQRIRELTKQYESQISKSLS 238

Query: 251 AFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQ 310
              GV N    V  E N+ +  IR    DP                     P        
Sbjct: 239 YIPGV-NVTVHVDIE-NLKSSVIRTQQIDPKKSAPVISNEFTVNDTQTQRAPRGEPGQVA 296

Query: 311 NMPHVSDRKVPLPRSLENTDKKEEQSN---YEINTKSIATTHDNYKLERLSIAVVVNKGR 367
           N P          R+ + T+      N   +EI+ K         K  ++SI+V  +  R
Sbjct: 297 NRPASVGGSAGSDRNRQMTESDNRVVNGVSFEISEK--QLLAAMPKAVQVSISVPRDYYR 354

Query: 368 LTEVLGRSADQGKID-SYLAEINKIVSAATGINSRR-------GDTITITSMDFLENQLF 419
                  +A +     + +  I K V A+   +  R        D I ++++   +    
Sbjct: 355 GIAAQRTAAGEKDPALTEIPAIEKEVLASVSKSVNRLIPADSPDDAIVVSTV---DTLAK 411

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
              TV + + +   + F     + + L    +   + L          +A  G+    + 
Sbjct: 412 ELPTVTIPWTETAWQFFREY-GSTMALGAFAIYVAMMLRKSMGSLAQANASPGDSRTDNA 470

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
               P++ +      P   +A+++      +      +R           +L  ++  N 
Sbjct: 471 NGMNPLNPSGG----PEAAMAMNALQGASAALPPKPATR---------RDQLQAIVRDNP 517

Query: 540 ERFAKILRKWARS 552
           E  A +L KW ++
Sbjct: 518 EATAALLGKWIQA 530


>gi|257487247|ref|ZP_05641288.1| type III secretion component protein HrcJ [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|50508099|dbj|BAD30075.1| HrcJ [Pseudomonas syringae pv. tabaci]
 gi|238577776|gb|ACR46687.1| HrcJ [Pseudomonas syringae pv. tabaci]
          Length = 268

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 4/162 (2%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
            +L+  L   D N +   L++ +ID R  +   G  ++V +S + +A   L A GLP  S
Sbjct: 23  TDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQS 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             S  ++F K      T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +
Sbjct: 83  RASLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141

Query: 167 IGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDV 207
                +A+V I+        S    I+ +VA+++P +     
Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSAQSA 183


>gi|167566308|ref|ZP_02359224.1| lipoprotein transmembrane protein [Burkholderia oklahomensis EO147]
          Length = 258

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDF-RISDNGS---SISVPSSMVGKARIHLAAQGLPS 104
             LY  L   D N +  AL +  +D  + + +G    +++V    + KA   L A+GLP+
Sbjct: 37  QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 96

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           +  +    LF K      T   + +  +  +  E++ T+  I G+V ARVHIV+P+   F
Sbjct: 97  TRYDDLGALFKKD-GLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPF 155

Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
            ++    +ASV I+    +   +    I++LV  +V  L   +V+V 
Sbjct: 156 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 202


>gi|298485938|ref|ZP_07004013.1| type III secretion system lipoprotein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159524|gb|EFI00570.1| type III secretion system lipoprotein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 268

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 4/162 (2%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
            +L+  L   D N +   L++ +ID R  +   G  ++V +S + +A   L A GLP  S
Sbjct: 23  TDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQS 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             S  ++F K      T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +
Sbjct: 83  RASLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141

Query: 167 IGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDV 207
                +A+V I+        S    I+ +VA+++P +     
Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSAQSA 183


>gi|307947525|ref|ZP_07662858.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Roseibium sp. TrichSKD4]
 gi|307769343|gb|EFO28571.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Roseibium sp. TrichSKD4]
          Length = 250

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 51/213 (23%), Positives = 90/213 (42%), Gaps = 23/213 (10%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M +L  + +F  +G             V  + +  F+A            LY KL+  DV
Sbjct: 1   MYVLSSIKRFLPNGR-----------FVAAILVAAFLAGC-------QSELYSKLDERDV 42

Query: 61  NRISVALSEANIDF---RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
           N ++  L    I     R S+   ++ +      +A   LA  GLP    +   E+F   
Sbjct: 43  NEMAFVLESNGISVSRERDSEGTYTLFIERGDTARAYGILAQNGLPRQKFDGLGEVFSSD 102

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
                T+F ++   + A+  E++++I  I+G+ +A VHI +P+     +  A   A+V I
Sbjct: 103 -KLVSTAFEEKARFIHAVTEELSKSISRIAGVTSAEVHITLPEKAPLEEETAPSRAAVFI 161

Query: 178 RAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTV 209
                +        I++LVA++V  L   DV+V
Sbjct: 162 YHSQGTDLNAQIPVIKNLVASSVERLSYEDVSV 194


>gi|312602780|ref|YP_004022625.1| type III secretion cytoplasmic membrane protein SctJ [Burkholderia
           rhizoxinica HKI 454]
 gi|306431583|emb|CBK52135.1| type III secretion cytoplasmic membrane protein SctJ [Burkholderia
           rhizoxinica HKI 454]
 gi|312170094|emb|CBW77106.1| type III secretion cytoplasmic membrane protein SctJ [Burkholderia
           rhizoxinica HKI 454]
          Length = 265

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 53/196 (27%), Positives = 87/196 (44%), Gaps = 10/196 (5%)

Query: 20  TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS-- 77
            R +++    +V + L +    +     +  LY  L   DVN + VAL E  +D   S  
Sbjct: 5   QRTIVIRISRIV-LALLVCLSLWG---CHKELYNNLSEQDVNEMMVALLERGVDASKSTP 60

Query: 78  DNGSS--ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135
           DNG +  +SV  + + +A   L A+GLP +  +    LF +      T   + +  +  L
Sbjct: 61  DNGKTWSLSVEEAEIVRAMEVLRARGLPHAKYDDLGSLFKRD-GLVSTPTEERVRFIYGL 119

Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHL 194
             E++ T+  I G+V ARV IV+P+           +ASV I+    S   +    I+ L
Sbjct: 120 SQELSNTLSKIDGVVVARVQIVLPNNDPLALQAKPSSASVFIKYRPDSDVAALVPQIKTL 179

Query: 195 VAAAVPNLDMGDVTVL 210
           V  +V  L    V+V 
Sbjct: 180 VVHSVEGLTYEAVSVT 195


>gi|330984953|gb|EGH83056.1| type III secretion protein HrcJ [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 269

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 75/162 (46%), Gaps = 4/162 (2%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
            +L+  L   D N +   L++ +ID R  +   G  ++V +  + +A   L A GLP  S
Sbjct: 23  TDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATRDMNRAVRVLNAAGLPRQS 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             S  E+F K      T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +
Sbjct: 83  RTSLGEIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141

Query: 167 IGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDV 207
                +A+V I+        S    I+ +VA+++P +     
Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQSA 183


>gi|3603315|gb|AAC35801.1| putative hrp type III secretion pathway protein [Pseudomonas
           syringae pv. glycinea]
          Length = 268

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 75/162 (46%), Gaps = 4/162 (2%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
            +L+  L   D N +   L++ +ID R  +   G  ++V +S + +A   L A GLP  S
Sbjct: 23  TDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQS 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             S  ++F K      T   +    + AL  E+  T   I G++ ARVH+V+P+  +  +
Sbjct: 83  RASLGDIFKKEGVI-STPLEERARYIYALSQELEATWSQIDGVIVARVHVVLPERIAPGE 141

Query: 167 IGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDV 207
                +A+V I+        S    I+ +VA+++P +     
Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSAQSA 183


>gi|330872935|gb|EGH07084.1| type III secretion protein HrcJ [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330963064|gb|EGH63324.1| type III secretion protein HrcJ [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 268

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 77/162 (47%), Gaps = 4/162 (2%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
            +L+  L   D N +   L++ +ID R  +   G  ++V +S + +A   L A GLP  S
Sbjct: 23  TDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSEMNRAVRVLDAAGLPRRS 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             +  E+F K      T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +
Sbjct: 83  RTTLGEIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141

Query: 167 IGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDV 207
                +A+V I+        S    I+ +VA+++P +    V
Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQSV 183


>gi|28868592|ref|NP_791211.1| type III secretion protein HrcJ [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213968275|ref|ZP_03396419.1| type III secretion protein HrcJ [Pseudomonas syringae pv. tomato
           T1]
 gi|301383410|ref|ZP_07231828.1| type III secretion protein HrcJ [Pseudomonas syringae pv. tomato
           Max13]
 gi|302061714|ref|ZP_07253255.1| type III secretion protein HrcJ [Pseudomonas syringae pv. tomato
           K40]
 gi|302129971|ref|ZP_07255961.1| type III secretion protein HrcJ [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|790910|gb|AAB00129.1| HrpC [Pseudomonas syringae pv. tomato]
 gi|28851830|gb|AAO54906.1| type III secretion protein HrcJ [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213926913|gb|EEB60464.1| type III secretion protein HrcJ [Pseudomonas syringae pv. tomato
           T1]
 gi|331015115|gb|EGH95171.1| type III secretion protein HrcJ [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 268

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 77/162 (47%), Gaps = 4/162 (2%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
            +L+  L   D N +   L++ +ID R  +   G  ++V +S + +A   L A GLP  S
Sbjct: 23  TDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSEMNRAVRVLDAAGLPRRS 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             +  E+F K      T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +
Sbjct: 83  RTTLGEIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141

Query: 167 IGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDV 207
                +A+V I+        S    I+ +VA+++P +    V
Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQSV 183


>gi|330957475|gb|EGH57735.1| type III secretion protein HrcJ [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 269

 Score =  127 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 75/162 (46%), Gaps = 4/162 (2%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
            +L+  L   D N +   L++ +ID R  +   G  ++V +  + +A   L A GLP  S
Sbjct: 23  TDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATRDMNRAVRVLNAAGLPRQS 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             S  E+F K      T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +
Sbjct: 83  RTSLGEIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141

Query: 167 IGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDV 207
                +A+V I+        S    I+ +VA+++P +     
Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQSA 183


>gi|330894451|gb|EGH27112.1| type III secretion protein HrcJ [Pseudomonas syringae pv. mori str.
           301020]
          Length = 269

 Score =  127 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 75/162 (46%), Gaps = 4/162 (2%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
            +L+  L   D N +   L++ +ID R  +   G  ++V +  + +A   L A GLP  S
Sbjct: 23  TDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATRDMNRAVRVLNAAGLPRQS 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             S  E+F K      T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +
Sbjct: 83  RTSLGEIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141

Query: 167 IGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDV 207
                +A+V I+        S    I+ +VA+++P +     
Sbjct: 142 PVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQSA 183


>gi|237799989|ref|ZP_04588450.1| type III secretion protein HrcJ [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331022844|gb|EGI02901.1| type III secretion protein HrcJ [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 269

 Score =  127 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 4/162 (2%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
            +L+  L   D N +   L++ +ID R  +   G  ++V +S + +A   L A GLP  S
Sbjct: 23  TDLFTGLSEQDSNEVVARLADQHIDARKRMEKTGVVVTVATSDMNRAVRVLDAAGLPRHS 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             S  E+F K      T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +
Sbjct: 83  RTSLGEIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERVAPGE 141

Query: 167 IGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDV 207
                +A+V I+        S    I+ +VA+++P +     
Sbjct: 142 PIQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSAQSA 183


>gi|51103010|gb|AAT96157.1| HrcJ [Pseudomonas viridiflava]
 gi|51103065|gb|AAT96211.1| HrcJ [Pseudomonas viridiflava]
          Length = 268

 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 41/160 (25%), Positives = 75/160 (46%), Gaps = 4/160 (2%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
            +L+  +   D N +   L++ +ID R  +   G  ++V +  + +A   L A GLP  S
Sbjct: 23  TDLFTGMSEQDSNEVIARLADQHIDARKRLEKGGVVVTVATQDMNRAVRVLDAAGLPRQS 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             S  E+F K      T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +
Sbjct: 83  RTSLGEIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGE 141

Query: 167 IGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMG 205
                +A+V I+        S    I+ +VA+++P +   
Sbjct: 142 PVQPASAAVFIKHSTALDPDSVRGRIQQMVASSIPGMSTQ 181


>gi|149926067|ref|ZP_01914330.1| putative type III secretion protein [Limnobacter sp. MED105]
 gi|149825355|gb|EDM84566.1| putative type III secretion protein [Limnobacter sp. MED105]
          Length = 265

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 4/158 (2%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSSSN 108
           L+  L   + N I  +L EA I    S    G  ISVP  M   A   L +QGLP +   
Sbjct: 30  LFSGLSQEEGNEIYSSLLEAGIPVEKSSGKEGVIISVPKQMSSDALRILQSQGLPRAKKT 89

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           S  E+F K +    +   +    + AL  E+  T+ S+ G+++ARVHIV+P+  +  ++ 
Sbjct: 90  SMGEVFKKESMI-SSPLEERARYLYALSQELEETLMSMDGVLSARVHIVLPERANPGEVL 148

Query: 169 ARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMG 205
           +  +A+V ++  N S + +    +R L+  ++P +   
Sbjct: 149 SPSSAAVFVKYENGSSFPAYVPRVRELIFKSIPGITGE 186


>gi|119034700|gb|ABL59995.1| SctJ [Lysobacter enzymogenes]
          Length = 281

 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 7/167 (4%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDN----GSSISVPSSMVGKARIHLAAQGLPS 104
             LY +L+    N +  AL +A I      +    G  + V    +  A   L ++GLP 
Sbjct: 43  TPLYSQLDEQQANELMAALLDAGIPAEKDPSPSKTGWEVMVNRGDIPYAMQVLNSRGLPR 102

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           +   S  E+F K   F  ++  ++   +  L  E++RT+  I G+V ARVHI +PD    
Sbjct: 103 AQYRSLGEVF-KKEGFASSALEEKARYLYGLSQELSRTLTRIDGVVEARVHIALPDRDPL 161

Query: 165 RKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNL-DMGDVTV 209
                  +ASV+I        +  E  I+  V  +V  L D+  VTV
Sbjct: 162 GGNVQDSSASVLIFERPGQSLRDRETDIKVFVKDSVEGLDDVNKVTV 208


>gi|171316789|ref|ZP_02906000.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia ambifaria MEX-5]
 gi|171098047|gb|EDT42863.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia ambifaria MEX-5]
          Length = 241

 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 69/165 (41%), Gaps = 6/165 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNGSS----ISVPSSMVGKARIHLAAQGLPSSS 106
           LY  L   D N +  AL E  ID      G+     +SVP      A   L  +GLP   
Sbjct: 17  LYENLTEQDANEMIAALFENGIDASKQRGGNGKFWMVSVPEGEFAGAINVLRDRGLPQEK 76

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            +    LF K   F  T   + +  +  L  E++ TI +I G++ ARV IV+P+     +
Sbjct: 77  RDDLGNLFKKD-GFVSTPTEERVRFLYGLSQELSSTISAIDGVMVARVQIVLPNNDPLAE 135

Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
                +ASV I+    S        I+ LV  +V  L    V+V 
Sbjct: 136 QVKPSSASVFIKYNADSSVGQIVPQIKTLVVNSVEGLAYERVSVT 180


>gi|312597814|gb|ADQ89929.1| RscJ [Pseudomonas fluorescens]
          Length = 293

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 4/159 (2%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPS 104
               L+  L   D N +   L+  N++   ++  +G ++ V  + +  A   L A GLP 
Sbjct: 18  ERTALHSHLSEQDANEVIAELANKNVEASKQVDKDGLTVLVEPADMNSAVQVLEAAGLPR 77

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
            S +S  E+F K      T   +    + AL  E+  T+  I G+V ARVH+V+P+  + 
Sbjct: 78  RSRSSLGEIFRKEGVI-STPMEERARYIYALSQELESTLSQIDGVVLARVHVVLPERVAP 136

Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNL 202
            +     +ASV I+  N     S    +R+LVA+ +P +
Sbjct: 137 GEPVQPASASVFIKHTNALDPDSITPRVRNLVASGIPGM 175


>gi|167615471|ref|ZP_02384106.1| lipoprotein transmembrane protein [Burkholderia thailandensis Bt4]
          Length = 252

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDF-RISDNGS---SISVPSSMVGKARIHLAAQGLPS 104
             LY  L   D N +  AL +  +D  + + +G    +++V    + KA   L A+GLP+
Sbjct: 39  QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 98

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           +  +    LF K      T   + +  +  +  E++ T+  I G+V ARVHIV+P+    
Sbjct: 99  TRYDDLGALFKKD-GLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 157

Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
            ++    +ASV I+    +   +    I++LV  +V  L   +V+V 
Sbjct: 158 AQVAKPSSASVFIKYRPSANLATLTPQIKNLVVHSVEGLTYDEVSVT 204


>gi|330812416|ref|YP_004356878.1| type III secretion protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380524|gb|AEA71874.1| putative type III secretion protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 295

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 4/159 (2%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPS 104
               L+  L   D N +   L+  N++   ++  +G ++ V  + +  A   L A GLP 
Sbjct: 20  ERTALHSHLSEQDANEVIAELANKNVEASKQVDKDGLTVLVEPADMNSAVQVLEAAGLPR 79

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
            S +S  E+F K      T   +    + AL  E+  T+  I G+V ARVH+V+P+  + 
Sbjct: 80  RSRSSLGEIFRKEGVI-STPMEERARYIYALSQELESTLSQIDGVVLARVHVVLPERVAP 138

Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNL 202
            +     +ASV I+  N     S    +R+LVA+ +P +
Sbjct: 139 GEPVQPASASVFIKHTNALDPDSITPRVRNLVASGIPGM 177


>gi|167577322|ref|ZP_02370196.1| lipoprotein transmembrane protein [Burkholderia thailandensis
           TXDOH]
          Length = 260

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDF-RISDNGS---SISVPSSMVGKARIHLAAQGLPS 104
             LY  L   D N +  AL +  +D  + + +G    +++V    + KA   L A+GLP+
Sbjct: 39  QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 98

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           +  +    LF K      T   + +  +  +  E++ T+  I G+V ARVHIV+P+    
Sbjct: 99  TRYDDLGALFKKD-GLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 157

Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
            ++    +ASV I+    +   +    I++LV  +V  L   +V+V 
Sbjct: 158 AQVAKPSSASVFIKYRPSANLATLTPQIKNLVVHSVEGLTYDEVSVT 204


>gi|27376924|ref|NP_768453.1| RhcJ protein [Bradyrhizobium japonicum USDA 110]
 gi|12620520|gb|AAG60796.1|AF322012_101 RhcJ [Bradyrhizobium japonicum]
 gi|27350066|dbj|BAC47078.1| RhcJ protein [Bradyrhizobium japonicum USDA 110]
          Length = 287

 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/204 (26%), Positives = 93/204 (45%), Gaps = 12/204 (5%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            K G+S GR     L   + +P++L +            +LY K++  + N +   L   
Sbjct: 5   MKRGSSGGRQSWRRLRVFLAMPLLLSLIGCK-------TDLYTKIQEREANEMLALLLGK 57

Query: 71  NIDF-RI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
            +D  R+   D  S+I V    +  +   L  +GLP  S  +  E+F K +    +   +
Sbjct: 58  GVDAVRVVAKDGTSTIQVEEKQLAYSIDLLNVEGLPRQSFKNLGEVF-KGSGLVASPIEE 116

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187
               V AL  E++RTI  I G+++ARVH+V+P     R+     +ASV IR  + +   +
Sbjct: 117 RARYVYALSEELSRTISDIDGVLSARVHVVLPKNDLLRQGATPSSASVFIRHGSSARLSA 176

Query: 188 -AEAIRHLVAAAVPNLDMGDVTVL 210
               I+ LVA ++  L    V V+
Sbjct: 177 LLPQIKMLVANSIEGLSYDKVAVV 200


>gi|237678823|emb|CAQ57550.1| RhcJ protein [Bradyrhizobium elkanii]
          Length = 291

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 5/164 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF-RI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           LY K++  + N +   L    +D  R+   D  S+I V    +  +   L  +GLP  S 
Sbjct: 41  LYSKIQEREANEMLALLLGKGVDAARVVAKDGTSTIQVEERQLAYSIDLLNVEGLPRQSF 100

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
            +  E+F K +    +   +    V AL  E++RTI  I G+++ARVH+V+P     R+ 
Sbjct: 101 KNLGEVF-KGSGLVASPIEERARYVYALSEELSRTISDIDGVLSARVHVVLPKNDLLRQD 159

Query: 168 GARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
               +ASV IR  + +   +    I+ LVA ++  L    V V+
Sbjct: 160 ATPSSASVFIRHGSNAKLSALLPQIKMLVANSIEGLSYDKVAVV 203


>gi|167840290|ref|ZP_02466974.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia thailandensis MSMB43]
          Length = 253

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDF-RISDNGS---SISVPSSMVGKARIHLAAQGLPS 104
             LY  L   D N +  AL +  +D  + + +G    +++V    + KA   L A+GLP+
Sbjct: 35  QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 94

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           +  +    LF K      T   + +  +  +  E++ T+  I G+V ARVHIV+P+    
Sbjct: 95  ARYDDLGALFKKD-GLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 153

Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
            ++    +ASV I+    +   +    I++LV  +V  L   +V+V 
Sbjct: 154 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 200


>gi|167924750|ref|ZP_02511841.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei BCC215]
          Length = 243

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDF-RISDNGS---SISVPSSMVGKARIHLAAQGLPS 104
             LY  L   D N +  AL +  +D  + + +G    +++V    + KA   L A+GLP+
Sbjct: 36  QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           +  +    LF K      T   + +  +  +  E++ T+  I G+V ARVHIV+P+    
Sbjct: 96  TRYDDLGALFKKD-GLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154

Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
            ++    +ASV I+    +   +    I++LV  +V  L   +V+V 
Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201


>gi|167907276|ref|ZP_02494481.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei NCTC 13177]
          Length = 244

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDF-RISDNGS---SISVPSSMVGKARIHLAAQGLPS 104
             LY  L   D N +  AL +  +D  + + +G    +++V    + KA   L A+GLP+
Sbjct: 36  QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           +  +    LF K      T   + +  +  +  E++ T+  I G+V ARVHIV+P+    
Sbjct: 96  TRYDDLGALFKKD-GLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154

Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
            ++    +ASV I+    +   +    I++LV  +V  L   +V+V 
Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201


>gi|167850348|ref|ZP_02475856.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei B7210]
          Length = 242

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDF-RISDNGS---SISVPSSMVGKARIHLAAQGLPS 104
             LY  L   D N +  AL +  +D  + + +G    +++V    + KA   L A+GLP+
Sbjct: 36  QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           +  +    LF K      T   + +  +  +  E++ T+  I G+V ARVHIV+P+    
Sbjct: 96  TRYDDLGALFKKD-GLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154

Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
            ++    +ASV I+    +   +    I++LV  +V  L   +V+V 
Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201


>gi|167743335|ref|ZP_02416109.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 14]
          Length = 230

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDF-RISDNGS---SISVPSSMVGKARIHLAAQGLPS 104
             LY  L   D N +  AL +  +D  + + +G    +++V    + KA   L A+GLP+
Sbjct: 36  QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           +  +    LF K      T   + +  +  +  E++ T+  I G+V ARVHIV+P+    
Sbjct: 96  TRYDDLGALFKKD-GLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154

Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
            ++    +ASV I+    +   +    I++LV  +V  L   +V+V 
Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201


>gi|83716240|ref|YP_438944.1| lipoprotein transmembrane protein [Burkholderia thailandensis E264]
 gi|83650065|gb|ABC34129.1| lipoprotein transmembrane protein [Burkholderia thailandensis E264]
          Length = 285

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDF-RISDNGS---SISVPSSMVGKARIHLAAQGLPS 104
             LY  L   D N +  AL +  +D  + + +G    +++V    + KA   L A+GLP+
Sbjct: 37  QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 96

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           +  +    LF K      T   + +  +  +  E++ T+  I G+V ARVHIV+P+    
Sbjct: 97  TRYDDLGALFKKD-GLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 155

Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
            ++    +ASV I+    +   +    I++LV  +V  L   +V+V 
Sbjct: 156 AQVAKPSSASVFIKYRPSANLATLTPQIKNLVVHSVEGLTYDEVSVT 202


>gi|257142047|ref|ZP_05590309.1| lipoprotein transmembrane protein [Burkholderia thailandensis E264]
          Length = 287

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDF-RISDNGS---SISVPSSMVGKARIHLAAQGLPS 104
             LY  L   D N +  AL +  +D  + + +G    +++V    + KA   L A+GLP+
Sbjct: 39  QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 98

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           +  +    LF K      T   + +  +  +  E++ T+  I G+V ARVHIV+P+    
Sbjct: 99  TRYDDLGALFKKD-GLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 157

Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
            ++    +ASV I+    +   +    I++LV  +V  L   +V+V 
Sbjct: 158 AQVAKPSSASVFIKYRPSANLATLTPQIKNLVVHSVEGLTYDEVSVT 204


>gi|167573409|ref|ZP_02366283.1| lipoprotein transmembrane protein [Burkholderia oklahomensis C6786]
          Length = 262

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDF-RISDNGS---SISVPSSMVGKARIHLAAQGLPS 104
             LY  L   D N +  AL +  +D  + + +G    +++V    + KA   L A+GLP+
Sbjct: 37  QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 96

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           +  +    LF K      T   + +  +  +  E++ T+  I G+V ARVHIV+P+    
Sbjct: 97  TRYDDLGALFKKD-GLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 155

Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
            ++    +ASV I+    +   +    I++LV  +V  L   +V+V 
Sbjct: 156 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 202


>gi|167915637|ref|ZP_02502728.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 112]
          Length = 239

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDF-RISDNGS---SISVPSSMVGKARIHLAAQGLPS 104
             LY  L   D N +  AL +  +D  + + +G    +++V    + KA   L A+GLP+
Sbjct: 36  QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           +  +    LF K      T   + +  +  +  E++ T+  I G+V ARVHIV+P+    
Sbjct: 96  TRYDDLGALFKKD-GLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154

Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
            ++    +ASV I+    +   +    I++LV  +V  L   +V+V 
Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201


>gi|167724370|ref|ZP_02407606.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei DM98]
          Length = 236

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDF-RISDNGS---SISVPSSMVGKARIHLAAQGLPS 104
             LY  L   D N +  AL +  +D  + + +G    +++V    + KA   L A+GLP+
Sbjct: 36  QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           +  +    LF K      T   + +  +  +  E++ T+  I G+V ARVHIV+P+    
Sbjct: 96  TRYDDLGALFKKD-GLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154

Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
            ++    +ASV I+    +   +    I++LV  +V  L   +V+V 
Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201


>gi|126442814|ref|YP_001063279.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Burkholderia pseudomallei 668]
 gi|126222305|gb|ABN85810.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 668]
          Length = 284

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDF-RISDNGS---SISVPSSMVGKARIHLAAQGLPS 104
             LY  L   D N +  AL +  +D  + + +G    +++V    + KA   L A+GLP+
Sbjct: 36  QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           +  +    LF K      T   + +  +  +  E++ T+  I G+V ARVHIV+P+    
Sbjct: 96  TRYDDLGALFKKD-GLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154

Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
            ++    +ASV I+    +   +    I++LV  +V  L   +V+V 
Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201


>gi|76819642|ref|YP_335842.1| lipoprotein transmembrane protein [Burkholderia pseudomallei 1710b]
 gi|76584115|gb|ABA53589.1| lipoprotein transmembrane protein [Burkholderia pseudomallei 1710b]
          Length = 282

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDF-RISDNGS---SISVPSSMVGKARIHLAAQGLPS 104
             LY  L   D N +  AL +  +D  + + +G    +++V    + KA   L A+GLP+
Sbjct: 34  QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 93

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           +  +    LF K      T   + +  +  +  E++ T+  I G+V ARVHIV+P+    
Sbjct: 94  TRYDDLGALFKKD-GLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 152

Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
            ++    +ASV I+    +   +    I++LV  +V  L   +V+V 
Sbjct: 153 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 199


>gi|226198447|ref|ZP_03794015.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei Pakistan 9]
 gi|254186953|ref|ZP_04893469.1| lipoprotein transmembrane protein [Burkholderia pseudomallei
           Pasteur 52237]
 gi|157934637|gb|EDO90307.1| lipoprotein transmembrane protein [Burkholderia pseudomallei
           Pasteur 52237]
 gi|225929504|gb|EEH25523.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei Pakistan 9]
          Length = 270

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDF-RISDNGS---SISVPSSMVGKARIHLAAQGLPS 104
             LY  L   D N +  AL +  +D  + + +G    +++V    + KA   L A+GLP+
Sbjct: 36  QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           +  +    LF K      T   + +  +  +  E++ T+  I G+V ARVHIV+P+    
Sbjct: 96  TRYDDLGALFKKD-GLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154

Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
            ++    +ASV I+    +   +    I++LV  +V  L   +V+V 
Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201


>gi|53722647|ref|YP_111632.1| type III secretion protein [Burkholderia pseudomallei K96243]
 gi|126457668|ref|YP_001076235.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Burkholderia pseudomallei 1106a]
 gi|217422397|ref|ZP_03453900.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 576]
 gi|242312420|ref|ZP_04811437.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 1106b]
 gi|254264523|ref|ZP_04955388.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 1710a]
 gi|52213061|emb|CAH39099.1| putative type III secretion protein [Burkholderia pseudomallei
           K96243]
 gi|126231436|gb|ABN94849.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 1106a]
 gi|217394628|gb|EEC34647.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 576]
 gi|242135659|gb|EES22062.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 1106b]
 gi|254215525|gb|EET04910.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 1710a]
          Length = 284

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDF-RISDNGS---SISVPSSMVGKARIHLAAQGLPS 104
             LY  L   D N +  AL +  +D  + + +G    +++V    + KA   L A+GLP+
Sbjct: 36  QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           +  +    LF K      T   + +  +  +  E++ T+  I G+V ARVHIV+P+    
Sbjct: 96  TRYDDLGALFKKD-GLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154

Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
            ++    +ASV I+    +   +    I++LV  +V  L   +V+V 
Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201


>gi|167820515|ref|ZP_02452195.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 91]
 gi|167828888|ref|ZP_02460359.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 9]
          Length = 235

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDF-RISDNGS---SISVPSSMVGKARIHLAAQGLPS 104
             LY  L   D N +  AL +  +D  + + +G    +++V    + KA   L A+GLP+
Sbjct: 36  QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           +  +    LF K      T   + +  +  +  E++ T+  I G+V ARVHIV+P+    
Sbjct: 96  TRYDDLGALFKKD-GLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154

Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
            ++    +ASV I+    +   +    I++LV  +V  L   +V+V 
Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201


>gi|330819406|ref|YP_004348268.1| Type III secretion apparatus lipoprotein, YscJ/HrcJ family protein
           [Burkholderia gladioli BSR3]
 gi|327371401|gb|AEA62756.1| Type III secretion apparatus lipoprotein, YscJ/HrcJ family protein
           [Burkholderia gladioli BSR3]
          Length = 277

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 8/186 (4%)

Query: 30  LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDNGS---SISV 85
              +  F              LY  L   DVN + VAL E  +D  + + +G    ++ V
Sbjct: 11  ASVVGAFALCALLAGCK--KELYGNLSEQDVNEMVVALLENGVDAAKETPDGGKTWTLEV 68

Query: 86  PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145
               + +A   L ++GLP S  ++  +LF K      T   + +  +  +  E++ T+  
Sbjct: 69  DGDQMVRAMEALRSRGLPKSRFDNLGDLFKKD-GLVSTPTEERVRFIYGMSQELSSTLSK 127

Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDM 204
           I G++ ARV IV+P+     +     +A+V I+    S   +    I+ LV  +V  L  
Sbjct: 128 IDGVLVARVQIVLPNNDPLAQTIKPSSAAVFIKYRPNSDVGALVPQIKTLVMHSVEGLTY 187

Query: 205 GDVTVL 210
             V+V 
Sbjct: 188 DQVSVT 193


>gi|317407862|gb|EFV87788.1| BscJ protein [Achromobacter xylosoxidans C54]
          Length = 284

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 53/204 (25%), Positives = 92/204 (45%), Gaps = 11/204 (5%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
           +F + G   G  R+ ++ S++L+  ML              +L   +   + N +   L 
Sbjct: 7   EFRRLGARRGYRRVWLIGSLLLLLAMLTACGA-------RVDLLAAVPEGEANEVLSVLL 59

Query: 69  EANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           +A I  + S    G +I+V +  V +A   L A+GLP    +   ++F K      +   
Sbjct: 60  DAGIAAQKSAGKAGVAINVQADQVAQALAVLRARGLPRERFDGMGQIFRKE-GLVSSPLE 118

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
           +    + AL  E+A T+  + G++AARVH+V+P+ G   +     TA+V I+        
Sbjct: 119 ERARYIYALSQELANTLSQMDGVIAARVHVVLPERGGVGEEATPSTAAVFIKTQPGYALD 178

Query: 187 S-AEAIRHLVAAAVPNLDMGDVTV 209
           +    IR LV  A+P L    V+V
Sbjct: 179 ALLPQIRRLVIHAIPGLSEDKVSV 202


>gi|229588272|ref|YP_002870391.1| putative type III secretion protein [Pseudomonas fluorescens SBW25]
 gi|229360138|emb|CAY46995.1| putative type III secretion protein [Pseudomonas fluorescens SBW25]
          Length = 271

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 44/173 (25%), Positives = 85/173 (49%), Gaps = 8/173 (4%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPS 104
               L+ +L   + N +   L++ +I  R   + +G ++SV ++ +G+A   L A GLP 
Sbjct: 29  DRVELHRQLSEQEANEVIAELADKHIRARKIPTKDGVTVSVDTNDIGRAVRTLEAVGLPK 88

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
            +  +  + F K      T   +    + AL  E+  T+ +I G++ ARVH+V+P+  + 
Sbjct: 89  LARATLGDTFRKEGVI-STPLEERARYIYALSQELEATLSNIDGVIVARVHVVLPERIAP 147

Query: 165 RKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVTVLDSTGKL 216
            +     +ASV I+        +  A +R +VA+++P +     T +D+  KL
Sbjct: 148 GEPVQPASASVFIKHDPRLDPDNIRARVRRMVASSIPGM----TTAVDNPQKL 196


>gi|167898945|ref|ZP_02486346.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 7894]
          Length = 235

 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDF-RISDNGS---SISVPSSMVGKARIHLAAQGLPS 104
             LY  L   D N +  AL +  +D  + + +G    +++V    + KA   L A+GLP+
Sbjct: 36  QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           +  +    LF K      T   + +  +  +  E++ T+  I G+V ARVHIV+P+    
Sbjct: 96  TRYDDLGALFKKD-GLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154

Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
            ++    +ASV I+    +   +    I++LV  +V  L   +V+V 
Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201


>gi|237509505|ref|ZP_04522220.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei MSHR346]
 gi|235001710|gb|EEP51134.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei MSHR346]
          Length = 277

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDF-RISDNGS---SISVPSSMVGKARIHLAAQGLPS 104
             LY  L   D N +  AL +  +D  + + +G    +++V    + KA   L A+GLP+
Sbjct: 36  QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           +  +    LF K      T   + +  +  +  E++ T+  I G+V ARVHIV+P+    
Sbjct: 96  TRYDDLGALFKKD-GLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154

Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
            ++    +ASV I+    +   +    I++LV  +V  L   +V+V 
Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201


>gi|167584002|ref|ZP_02376390.1| lipoprotein transmembrane protein [Burkholderia ubonensis Bu]
          Length = 227

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDF-RISDNGS---SISVPSSMVGKARIHLAAQGLPS 104
             LY  L   D N +  AL +  +D  + + +G    +++V    + KA   L A+GLP+
Sbjct: 22  QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 81

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           +  +    LF K      T   + +  +  +  E++ T+  I G+V ARVHIV+P+    
Sbjct: 82  TRYDDLGALFKKD-GLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 140

Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
            ++    +ASV I+    +   +    I++LV  +V  L   +V+V 
Sbjct: 141 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 187


>gi|254193798|ref|ZP_04900230.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei S13]
 gi|169650549|gb|EDS83242.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei S13]
          Length = 284

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 85/188 (45%), Gaps = 14/188 (7%)

Query: 28  VILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDNGS---SI 83
            ++  + LF   R          LY  L   D N +  AL +  +D  + + +G    ++
Sbjct: 23  TLVAYVALFAGCR--------QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTL 74

Query: 84  SVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTI 143
           +V    + KA   L A+GLP++  +    LF K      T   + +  +  +  E++ T+
Sbjct: 75  AVDDKQIVKAMEVLRARGLPATRYDDLGALFKKD-GLVSTPTEERVRFIYGVSQELSDTL 133

Query: 144 QSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNL 202
             I G+V ARVHIV+P+     ++    +ASV I+    +   +    I++LV  +V  L
Sbjct: 134 SKIDGVVVARVHIVLPNNDPLAQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGL 193

Query: 203 DMGDVTVL 210
              +V+V 
Sbjct: 194 TYDEVSVT 201


>gi|462730|sp|P33209|NOLT_RHIFR RecName: Full=Nodulation protein nolT; Flags: Precursor
 gi|152385|gb|AAB17677.1| nodulation protein [Sinorhizobium fredii]
 gi|19749322|gb|AAL98692.1| NolT [Sinorhizobium fredii]
          Length = 289

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 5/166 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDF-RIS--DNGSSISVPSSMVGKARIHLAAQGLPSS 105
            +LY +L+  + N I   L +  +D  R++  D  S+I V   ++  +   L  +GLP  
Sbjct: 36  VDLYTQLQEREANEIVALLMDNGVDAVRVAGKDGTSTIQVDEKLLAFSIKLLNGKGLPRQ 95

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
           S  +  E+F + +    +   +    V AL  E++ TI  I G+ +ARVH+V+P     R
Sbjct: 96  SFKNLGEIF-QGSGLIASPTEERARYVYALSEELSHTISDIDGVFSARVHVVLPHNDLLR 154

Query: 166 KIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
                 +ASV IR     ++      I+ LVA ++  L    V V+
Sbjct: 155 AGDTPSSASVFIRHDAKTNLPALLPKIKMLVAESIEGLAYDKVEVV 200


>gi|134282063|ref|ZP_01768769.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 305]
 gi|134246592|gb|EBA46680.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 305]
          Length = 284

 Score =  123 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDF--RISDNG--SSISVPSSMVGKARIHLAAQGLPS 104
             LY  L   D N +  AL +  +D   +  D+G   +++V    + KA   L A+GLP+
Sbjct: 36  QELYGGLAERDCNEMMAALLQNGVDAQKKTPDDGKTWTLAVDDKQIVKAMEVLRARGLPA 95

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           +  +    LF K      T   + +  +  +  E++ T+  I G+V ARVHIV+P+    
Sbjct: 96  TRYDDLGALFKKD-GLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154

Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
            ++    +ASV I+    +   +    I++LV  +V  L   +V+V 
Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201


>gi|323530318|ref|YP_004232470.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia sp. CCGE1001]
 gi|323387320|gb|ADX59410.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia sp. CCGE1001]
          Length = 282

 Score =  123 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 47/167 (28%), Positives = 73/167 (43%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRIS--DNG--SSISVPSSMVGKARIHLAAQGLPS 104
             LY  L   D N + VAL E  +D   S  DNG   ++ V    + +A   L  +GLP 
Sbjct: 39  KELYRNLTEQDANEMVVALLEQGVDASKSTVDNGKTWTLEVDDKQLVRAMQVLRERGLPH 98

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           +  +    LF K      T   + +  +  L  E++ T+  I G++ ARV IV+P+    
Sbjct: 99  NRYDDLGSLFKKD-GLVSTPTEERVRFIYGLSQELSATLSKIDGVIVARVQIVLPNNDPL 157

Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
            +     +ASV I+    S   +    I+ LV  +V  L    V+V 
Sbjct: 158 AQQMKPSSASVFIKYRPDSDASALVPQIKTLVMHSVEGLTYDAVSVT 204


>gi|254253717|ref|ZP_04947034.1| Type III secretory pathway lipoprotein EscJ [Burkholderia dolosa
           AUO158]
 gi|124898362|gb|EAY70205.1| Type III secretory pathway lipoprotein EscJ [Burkholderia dolosa
           AUO158]
          Length = 263

 Score =  123 bits (308), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 49/192 (25%), Positives = 81/192 (42%), Gaps = 6/192 (3%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS-DNGS---SISVPSSM 89
           ++ +AA     +     LY +L  SD N +  AL  + +D + S  +G    S+ V    
Sbjct: 16  LVAVAALVLSLAACKQELYGQLTESDCNEMVAALLMSGVDAQKSTPDGGKTWSVGVDEKQ 75

Query: 90  VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149
           +  A   L A+GLP    +    LF K      T   + +  +  L  E+  T+  I G+
Sbjct: 76  IVHAVEVLRARGLPRKKFDDLGSLFKKD-GLVSTPTEERVRFIYGLSQELDDTLSKIDGV 134

Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVT 208
           V ARV IV+P+     +     +ASV I+    +  +    AI++LV  ++  L    V+
Sbjct: 135 VVARVQIVLPNNDPLAQSVKPSSASVFIKYRPDANLERMTPAIKNLVVHSIEGLTYDQVS 194

Query: 209 VLDSTGKLLTAN 220
           V       L   
Sbjct: 195 VTSVPADALDPP 206


>gi|52631916|gb|AAU85366.1| nodulation protein [Sinorhizobium fredii]
          Length = 289

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 5/166 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDF-RIS--DNGSSISVPSSMVGKARIHLAAQGLPSS 105
            +LY +L+  + N +   L +  +D  R++  D  S+I V   ++  +   L  +GLP  
Sbjct: 36  VDLYTQLQEREANEMLALLMDNGVDAVRVAGKDGTSTIQVDEKLLAFSIKLLNGKGLPRQ 95

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
           S  +  E+F + +    +   +    V AL  E++ TI  I G+ +ARVH+V+P     R
Sbjct: 96  SFKNLGEIF-QGSGLIASPTEERARYVYALSEELSHTISDIDGVFSARVHVVLPHNDLLR 154

Query: 166 KIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
                 +ASV IR     ++      I+ LVA ++  L    V V+
Sbjct: 155 AGDTPSSASVFIRHDAKTNLPALLPKIKMLVAESIEGLAYDKVEVV 200


>gi|307725653|ref|YP_003908866.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia sp. CCGE1003]
 gi|307586178|gb|ADN59575.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia sp. CCGE1003]
          Length = 276

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 73/167 (43%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRIS--DNG--SSISVPSSMVGKARIHLAAQGLPS 104
             LY  L   D N + VAL E  +D   S  DNG   ++ V    + +A   L  +GLP 
Sbjct: 33  KELYRNLTEQDANEMVVALLEQGVDASKSTVDNGKSWTLEVDDKQLVRAMQVLRERGLPH 92

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           S  +    LF K      T   + +  +  L  E++ T+  I G++ ARV IV+P+    
Sbjct: 93  SRYDDLGSLFKKD-GLVSTPTEERVRFIYGLSQELSATLSKIDGVIVARVQIVLPNNDPL 151

Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
            +     +ASV I+    S   +    I+ LV  +V  L    V+V 
Sbjct: 152 AQQMKPSSASVFIKYRPDSDANALVPQIKTLVMHSVEGLTYDAVSVT 198


>gi|115360597|ref|YP_777734.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Burkholderia ambifaria AMMD]
 gi|115285925|gb|ABI91400.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia ambifaria AMMD]
          Length = 263

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/193 (25%), Positives = 85/193 (44%), Gaps = 17/193 (8%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS-DNGS 81
           L+ A+V+++ +                +LY +L  SD N +  AL  + +D + S  +G 
Sbjct: 16  LVAAAVLVLSLAACK-----------QDLYGQLSESDCNEMVAALLSSGVDAQKSTPDGG 64

Query: 82  ---SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
              S+SV    +  A   L A+G+P    +    LF K      T   + +  +  L  E
Sbjct: 65  KTWSVSVDEKQIVHAVEVLRARGIPRKKFDDLGSLFKKD-GLVSTPTEERVRFIYGLSQE 123

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAA 197
           +  T+  I G+V ARV IV+P+     +     +ASV I+    +  +    AI++LV  
Sbjct: 124 LDDTLSKIDGVVVARVQIVLPNNDPLAQSVKPSSASVFIKYRPDANLERMTPAIKNLVVH 183

Query: 198 AVPNLDMGDVTVL 210
           ++  L    V+V 
Sbjct: 184 SIEGLTYDQVSVT 196


>gi|167567951|ref|ZP_02360867.1| type III secretion associated protein [Burkholderia oklahomensis
           EO147]
 gi|167573175|ref|ZP_02366049.1| type III secretion associated protein [Burkholderia oklahomensis
           C6786]
          Length = 260

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 74/167 (44%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDF--RISDNG--SSISVPSSMVGKARIHLAAQGLPS 104
             LY  L   DVN + VAL E  +D     +D G   ++ V S  +  A   L A+GLP 
Sbjct: 16  KELYGGLSEQDVNEMLVALLENGVDASKETADGGKNWTLGVESDQLVHAMGVLRARGLPR 75

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           S  +    LF K      T   + I  +  +  E++ T+  I G++ ARV IV+P+    
Sbjct: 76  SKFDDLGNLFKKD-GLVSTPTEERIRFIYGMSQELSSTLSKIDGVLVARVQIVLPNNDPL 134

Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
            +     +ASV I+    S   +    I+ LV  +V  L    V+V 
Sbjct: 135 AQAAKPSSASVFIKYRPSSDIGALIPQIKTLVMHSVEGLTYEQVSVT 181


>gi|16520038|ref|NP_444158.1| outermembrane protein RhcJ; component of type III secretion
           apparatus [Sinorhizobium fredii NGR234]
 gi|2497732|sp|P55714|NOLT_RHISN RecName: Full=Nodulation protein nolT; Flags: Precursor
 gi|2182731|gb|AAB91945.1| outermembrane protein RhcJ; component of type III secretion
           apparatus [Sinorhizobium fredii NGR234]
          Length = 289

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 5/166 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDF-RIS--DNGSSISVPSSMVGKARIHLAAQGLPSS 105
            +LY +L+  + N +   L ++ +D  R++  D  S+I V   ++  +   L A+GLP  
Sbjct: 36  VDLYTQLQEREANEMLALLMDSGVDAVRVAGKDGTSTIQVDEKLLAFSIKLLNAKGLPRQ 95

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
           S  +  E+F + +    +   +    V AL  E++ TI  I G+ +ARVH+V+P     R
Sbjct: 96  SFKNLGEIF-QGSGLIASPTEERARYVYALSEELSHTISDIDGVFSARVHVVLPHNDLLR 154

Query: 166 KIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
                 +ASV IR     ++      I+ LVA ++  L    V V+
Sbjct: 155 AGDTPSSASVFIRHDAKTNLPALLPKIKMLVAESIEGLAYDKVEVV 200


>gi|15042153|gb|AAK81934.1|AF292566_18 RscJ [Pseudomonas fluorescens]
          Length = 271

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 44/173 (25%), Positives = 86/173 (49%), Gaps = 8/173 (4%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDF-RI-SDNGSSISVPSSMVGKARIHLAAQGLPS 104
               L+ +L   + N +   L++ +I   +I + +G ++SV ++ +G+A   L A GLP 
Sbjct: 29  DRVELHRQLSEQEANEVIAELADKHIRALQIPTKDGVTVSVDTNDIGRAVRTLEAVGLPK 88

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
            +  +  + F K      T   +    + AL  E+  T+ +I G++ ARVH+V+P+  + 
Sbjct: 89  LARATLGDTFRKEGVI-STPLEERARYIYALSQELEATLSNIDGVIVARVHVVLPERIAP 147

Query: 165 RKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVTVLDSTGKL 216
            +     +ASV I+        +  A +R +VA+++P +     T +D+  KL
Sbjct: 148 GEPVQPASASVFIKHDPRLDPDNIRARVRRMVASSIPGM----TTAVDNPQKL 196


>gi|172064921|ref|YP_001815633.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Burkholderia ambifaria MC40-6]
 gi|171997163|gb|ACB68080.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia ambifaria MC40-6]
          Length = 264

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/182 (25%), Positives = 79/182 (43%), Gaps = 6/182 (3%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS-DNGS---SISVPSSM 89
           ++  A      +     LY +L  SD N +  AL  + +D + S  +G    S+SV    
Sbjct: 16  LVATAVLVLSLAACKQELYGQLSESDCNEMVAALLSSGVDAQKSTPDGGKTWSVSVDEKQ 75

Query: 90  VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149
           +  A   L A+G+P    +    LF K      T   + +  +  L  E+  T+  I G+
Sbjct: 76  IVHAVEVLRARGIPRKKFDDLGSLFKKD-GLVSTPTEERVRFIYGLSQELDDTLSKIDGV 134

Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVT 208
           V ARV IV+P+     +     +ASV I+    +  +    AI++LV  ++  L    V+
Sbjct: 135 VVARVQIVLPNNDPLAQSVKPSSASVFIKYRPDANLERMTPAIKNLVVHSIEGLTYDQVS 194

Query: 209 VL 210
           V 
Sbjct: 195 VT 196


>gi|170701293|ref|ZP_02892259.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia ambifaria IOP40-10]
 gi|170133816|gb|EDT02178.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia ambifaria IOP40-10]
          Length = 244

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 46/167 (27%), Positives = 75/167 (44%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRIS-DNGS---SISVPSSMVGKARIHLAAQGLPS 104
             LY +L  SD N +  AL  + +D + S  +G    S+SV    +  A   L A+G+P 
Sbjct: 11  QELYGQLSESDCNEMVAALLSSGVDAQKSTPDGGKTWSVSVDEKQIVHAVEVLRARGIPR 70

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
              +    LF K      T   + +  +  L  E+  T+  I G+V ARV IV+P+    
Sbjct: 71  KKFDDLGSLFKKD-GLVSTPTEERVRFIYGLSQELDDTLSKIDGVVVARVQIVLPNNDPL 129

Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
            +     +ASV I+    +  +    AI++LV  ++  L    V+V 
Sbjct: 130 AQSVKPSSASVFIKYRPDANLERMTPAIKNLVVHSIEGLTYDQVSVT 176


>gi|9885635|gb|AAG01458.1|AF282857_7 HrcJ [Pantoea stewartii subsp. stewartii]
          Length = 259

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 83/181 (45%), Gaps = 10/181 (5%)

Query: 25  LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSS 82
           L S+IL+ ++L               L   L  +D N ++  L   +I      + +G +
Sbjct: 6   LKSLILMSVLLLFGCN------DQVELNHGLTENDANEVAAELGRYHIKAEKHTNKDGIT 59

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           + V ++ + +A   L A GLP  +  +  E+F K N    T   +    + AL  E+  T
Sbjct: 60  VMVDTADLNRAVHILDAAGLPRPTRTNLGEVFQK-NGVISTPLEERARYIYALSQEVEST 118

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPN 201
           +  I G++ ARVH+V+P+  +  +     +A+V I+          E  IR +VA+++P 
Sbjct: 119 LSQIDGVIVARVHVVLPERVAPGEPILPASAAVFIKYRPELDPDVIEPRIRQMVASSLPG 178

Query: 202 L 202
           L
Sbjct: 179 L 179


>gi|170690590|ref|ZP_02881757.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia graminis C4D1M]
 gi|170145025|gb|EDT13186.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia graminis C4D1M]
          Length = 282

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 72/167 (43%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRIS--DNG--SSISVPSSMVGKARIHLAAQGLPS 104
             LY  L   D N + VAL E  +D   S  DNG   ++ V    +  A   L  +GLP 
Sbjct: 39  KELYRNLTEQDANEMVVALLEQGVDASKSTIDNGKTWTLEVDDKQLVHAMQVLRERGLPH 98

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           S  +    LF K      T   + +  +  L  E++ T+  I G++ ARV IV+P+    
Sbjct: 99  SRYDDLGSLFKKD-GLVSTPTEERVRFIYGLSQELSATLSKIDGVIVARVQIVLPNNDPL 157

Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
            +     +ASV I+    S   +    I+ LV  +V  L    V+V 
Sbjct: 158 AQQMKPSSASVFIKYRPDSDANALVPQIKTLVMHSVEGLTYDAVSVT 204


>gi|171319020|ref|ZP_02908147.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia ambifaria MEX-5]
 gi|171095775|gb|EDT40728.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia ambifaria MEX-5]
          Length = 264

 Score =  120 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 50/163 (30%), Positives = 81/163 (49%), Gaps = 5/163 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRIS---DNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           L+ ++   D N +   L  A +         +G  +SV S+ V  A   L++ GLP    
Sbjct: 19  LFDQINERDANEMLSVLGRAGVAAEKDQRSADGWRLSVASADVSVALEILSSAGLPRERY 78

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
            S  ELF K      T   + +  V A+  E++RTI +I G++ ARVH+ +P      ++
Sbjct: 79  KSIGELFPKE-GLISTPVEEHMRSVYAISQELSRTISNIDGVITARVHLNIPRREPLLRV 137

Query: 168 GARPTASVMIRAINP-SVYKSAEAIRHLVAAAVPNLDMGDVTV 209
              PTASV+++     S+  +  AI+ LV  A+ +LD  +VTV
Sbjct: 138 QQTPTASVLVKYRAEVSMQPNTLAIKDLVVGAIKDLDRANVTV 180


>gi|251789507|ref|YP_003004228.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Dickeya
           zeae Ech1591]
 gi|247538128|gb|ACT06749.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Dickeya
           zeae Ech1591]
          Length = 261

 Score =  120 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 43/173 (24%), Positives = 75/173 (43%), Gaps = 4/173 (2%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN--GSSISVPSSMV 90
            +  + A           L+  L  +D N +  AL   +I      +  G SI +    +
Sbjct: 10  FLTLLLAMLIAGCGDRVELHRGLSENDANEVIAALGGYHIGAEKRTDKAGVSILIDVKDM 69

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
            +A   L A GLP  +  +  ++F K      T   +    + AL  E+  T+  I G++
Sbjct: 70  ERAVNILNAAGLPRQARTNLGQVFQKTGVI-STPLEERARYIYALSQEVESTLTQIDGVL 128

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNL 202
            ARVH+V+P+  +  +     +A+V I+        S E  IR +VA+++P L
Sbjct: 129 VARVHVVLPERIAPGEPIQPASAAVFIKYRPELEPDSIEPRIRRMVASSIPGL 181


>gi|217425426|ref|ZP_03456920.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 576]
 gi|217391677|gb|EEC31705.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 576]
          Length = 274

 Score =  120 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 6/186 (3%)

Query: 30  LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDNGSS---ISV 85
           LV  +L + A   + +     LY  L   DVN + VAL E  +D  + S +G     ++V
Sbjct: 11  LVVRLLGVLALSVLLAGCKKELYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLNV 70

Query: 86  PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145
               +  A   L  +GLP S  +    LF K      T   + I  +  +  E++ T+  
Sbjct: 71  DGDQLVHAMEVLRTRGLPRSKFDDLGNLFKKD-GLVSTPTEERIRFIYGMSQELSSTLSK 129

Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDM 204
           I G++ ARV IV+P+     +     +A+V I+    +   +    I+ LV  +V  L  
Sbjct: 130 IDGVLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTY 189

Query: 205 GDVTVL 210
             V+V 
Sbjct: 190 DQVSVT 195


>gi|329901481|ref|ZP_08272819.1| Type III secretory pathway, lipoprotein EscJ [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327549089|gb|EGF33689.1| Type III secretory pathway, lipoprotein EscJ [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 245

 Score =  120 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 79/170 (46%), Gaps = 8/170 (4%)

Query: 48  YDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSS 105
             NL   L+ +D N I   L    I+ +   +  G +++V  + V +A   + A GLP  
Sbjct: 1   MSNLQTNLQDADANEIVALLRHNGIEAKKVTAKEGITLTVHEADVPRATDIMRAAGLPKR 60

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
           S  +   +F K      T   + +  + AL  E+  T+Q    +V+ARVH+V+P+  +  
Sbjct: 61  SLANLGTVF-KKEGMISTPLEERVRYIHALSEELEFTLQQFDHVVSARVHVVLPERIAPG 119

Query: 166 KIGARPTASVMIRAINP-SVYKSAEAIRHLVAAAVPNLD----MGDVTVL 210
           +     +A+V ++   P     +   I +LVA+++P L        V+V+
Sbjct: 120 EPIQPSSAAVFVKYTEPFDEDTNIPRITNLVASSIPGLSGIEGRSKVSVV 169


>gi|330963702|gb|EGH63962.1| type III secretion component [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 259

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 87/197 (44%), Gaps = 14/197 (7%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RI 76
             R  +L  +I+  +   + A          +LY  L   + N +   L    I    ++
Sbjct: 2   PRRCRVLRLLIVATLASLLQACDI-------DLYTNLGEREANAMLAVLLRDGIPASRKV 54

Query: 77  SDNGS-SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135
            DNG   + V      +A   L   GLP  S ++  E+F K N    +   +    V AL
Sbjct: 55  QDNGQLKVMVDEKRFAQAMAALDDAGLPGQSFSNMGEVF-KGNGLVSSPVQERAQMVYAL 113

Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA--EAIRH 193
             E++ T+  I GI++ARVH+V+PD    +++ +  +ASV++R  +P    +     I+ 
Sbjct: 114 SEELSHTVSQIDGILSARVHVVLPDNDLLKRVISPSSASVLVR-FDPRTDINVLIPQIKT 172

Query: 194 LVAAAVPNLDMGDVTVL 210
           LVA  +  L    V+V 
Sbjct: 173 LVANGISGLGYDGVSVT 189


>gi|313106063|ref|ZP_07792321.1| Flagella M-ring outer membrane protein precursor [Pseudomonas
           aeruginosa 39016]
 gi|310878823|gb|EFQ37417.1| Flagella M-ring outer membrane protein precursor [Pseudomonas
           aeruginosa 39016]
          Length = 185

 Score =  120 bits (301), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 85/204 (41%), Gaps = 29/204 (14%)

Query: 360 AVVVNKGRLTEV-LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           AVV++     +   G  + Q      LA   ++V  + G ++ RGD++++ +  F   Q 
Sbjct: 2   AVVLDDQMKVDAKTGEVSHQPWSADELARFTRLVQDSVGYDASRGDSVSVINAPFAPAQA 61

Query: 419 FNSGTV----QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR-LHNIDDAKKGE 473
               ++    Q  F DI+ +           ++G L +  L    LR  L NI    KG+
Sbjct: 62  EEIDSIPFYSQPWFWDIVKQ-----------VLGVLFILVLVFGVLRPVLSNITGGGKGK 110

Query: 474 --VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF-SHSRNLQSRINSYVSKQSDLR 530
              GG        +  +   G + +D +++   +  +  S +    +++N+         
Sbjct: 111 SLAGGGGRDGDLALGESGLEGSLADDRVSIGGPSSILLPSPTEGYDAQLNA--------- 161

Query: 531 LLHMIEINEERFAKILRKWARSEI 554
           + +++  +  R A+++++W  ++ 
Sbjct: 162 IKNLVAQDPGRVAQVVKEWINADE 185


>gi|325921922|ref|ZP_08183733.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Xanthomonas gardneri ATCC 19865]
 gi|325547624|gb|EGD18667.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Xanthomonas gardneri ATCC 19865]
          Length = 254

 Score =  120 bits (301), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 6/165 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106
           LY  L  +D N +   L  A +D      D+G + +V  P   V  A   L   G+P   
Sbjct: 23  LYSGLTENDANDMLAVLLTAGVDAEKLTPDDGKTWAVNAPHDQVAYALNVLRTHGMPHER 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             +  E+F K      T   + +  +  +  ++++T+ +I G++AA V IV+P+      
Sbjct: 83  HANLGEMFKKD-GLISTPTEERVRFIYGVSQQLSQTLSNIDGVIAADVQIVLPNNDPLST 141

Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
                +A+V I+    S   S   +I+ LV  +V  L   +V+V 
Sbjct: 142 SVKPSSAAVFIKFRVGSDLTSLVPSIKTLVMHSVEGLTYENVSVT 186


>gi|53722424|ref|YP_111409.1| type III secretion associated protein [Burkholderia pseudomallei
           K96243]
 gi|52212838|emb|CAH38872.1| putative type III secretion associated protein [Burkholderia
           pseudomallei K96243]
          Length = 274

 Score =  120 bits (301), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 6/186 (3%)

Query: 30  LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDNGSS---ISV 85
           LV  +L + A   + +     LY  L   DVN + VAL E  +D  + S +G     ++V
Sbjct: 11  LVVRLLGVLALSVLLAGCKKELYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLNV 70

Query: 86  PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145
               +  A   L  +GLP S  +    LF K      T   + I  +  +  E++ T+  
Sbjct: 71  DGDQLVHAMEVLRTRGLPRSKFDDLGNLFKKD-GLVSTPTEERIRFIYGMSQELSSTLSK 129

Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDM 204
           I G++ ARV IV+P+     +     +A+V I+    +   +    I+ LV  +V  L  
Sbjct: 130 IDGVLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTY 189

Query: 205 GDVTVL 210
             V+V 
Sbjct: 190 DQVSVT 195


>gi|167906939|ref|ZP_02494144.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei NCTC 13177]
          Length = 269

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 6/186 (3%)

Query: 30  LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDNGSS---ISV 85
           LV  +L + A   + +     LY  L   DVN + VAL E  +D  + S +G     ++V
Sbjct: 6   LVVRLLGVLALSVLLAGCKKELYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLNV 65

Query: 86  PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145
               +  A   L  +GLP S  +    LF K      T   + I  +  +  E++ T+  
Sbjct: 66  DGDQLVHAMEVLRTRGLPRSKFDDLGNLFKKD-GLVSTPTEERIRFIYGMSQELSSTLSK 124

Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDM 204
           I G++ ARV IV+P+     +     +A+V I+    +   +    I+ LV  +V  L  
Sbjct: 125 IDGVLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTY 184

Query: 205 GDVTVL 210
             V+V 
Sbjct: 185 DQVSVT 190


>gi|330876200|gb|EGH10349.1| type III secretion component [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
          Length = 259

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 87/197 (44%), Gaps = 14/197 (7%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RI 76
             R  +L  +I+  +   + A          +LY  L   + N +   L    I    ++
Sbjct: 2   PRRCRVLRLLIVATLASLLQACDI-------DLYTNLGEREANAMLAVLLRDGIPASRKV 54

Query: 77  SDNGS-SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135
            DNG   + V      +A   L   GLP  S ++  E+F K N    +   +    V AL
Sbjct: 55  QDNGQLKVMVDEKRFAQAMAALDDAGLPGQSFSNMGEVF-KGNGLVSSPVQERAQMVYAL 113

Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA--EAIRH 193
             E++ T+  I GI++ARVH+V+PD    +++ +  +ASV++R  +P    +     I+ 
Sbjct: 114 SEELSHTVSQIDGILSARVHVVLPDNDLLKRVISPSSASVLVR-FDPRTDINVLIPQIKT 172

Query: 194 LVAAAVPNLDMGDVTVL 210
           LVA  +  L    V+V 
Sbjct: 173 LVANGISGLGYDGVSVT 189


>gi|14719872|gb|AAK73236.1| SctJ [Burkholderia pseudomallei]
 gi|48479054|gb|AAT44850.1| lipoprotein transmembrane protein [Burkholderia pseudomallei]
          Length = 274

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 6/186 (3%)

Query: 30  LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDNGSS---ISV 85
           LV  +L + A   + +     LY  L   DVN + VAL E  +D  + S +G     ++V
Sbjct: 11  LVVRLLGVLALSVLLAGCKKELYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLNV 70

Query: 86  PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145
               +  A   L  +GLP S  +    LF K      T   + I  +  +  E++ T+  
Sbjct: 71  DGDQLVHAMEVLRTRGLPRSKFDDLGNLFKKD-GLVSTPTEERIRFIYGMSQELSSTLSK 129

Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDM 204
           I G++ ARV IV+P+     +     +A+V I+    +   +    I+ LV  +V  L  
Sbjct: 130 IDGVLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTY 189

Query: 205 GDVTVL 210
             V+V 
Sbjct: 190 DQVSVT 195


>gi|238023713|ref|YP_002907945.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family protein
           [Burkholderia glumae BGR1]
 gi|237878378|gb|ACR30710.1| Type III secretion apparatus lipoprotein, YscJ/HrcJ family protein
           [Burkholderia glumae BGR1]
          Length = 280

 Score =  120 bits (300), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRIS----DNGSSISVPSSMVGKARIHLAAQGLPS 104
             LY  L   DVN + VAL E  +D            ++ V    + +A   L ++GLP 
Sbjct: 28  KELYGNLSEQDVNEMVVALLENGVDASKETPDAGKTWTLEVDGDQMVRAMEALRSRGLPK 87

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           S  ++  +LF K      T   + +  +  +  E++ T+  I G++ ARV IV+P+    
Sbjct: 88  SRFDNLGDLFKKD-GLVSTPTEERVRFIYGMSQELSSTLSKIDGVLVARVQIVLPNNDPL 146

Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
            +     +A+V I+    S   +    I+ LV  +V  L    V+V 
Sbjct: 147 AQTIKPSSAAVFIKYRPNSDVGALVPQIKTLVMHSVEGLTYDQVSVT 193


>gi|298487098|ref|ZP_07005148.1| type III secretion system lipoprotein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298158341|gb|EFH99411.1| type III secretion system lipoprotein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 259

 Score =  120 bits (300), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 87/197 (44%), Gaps = 14/197 (7%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RI 76
             R  +L  +I+  +   + A          +LY  L   + N +   L    I    ++
Sbjct: 2   PKRRRVLRLLIVATLASLLQACDI-------DLYTNLGEREANAMLAVLLRDGIPASRKV 54

Query: 77  SDNGS-SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135
            DNG   + V      +A   L   GLP  S ++  E+F K N    +   +    V AL
Sbjct: 55  QDNGQLKVMVDEKRFAQAMAALDDAGLPGQSFSNMGEIF-KGNGLVSSPVQERAQMVYAL 113

Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA--EAIRH 193
             E++ T+  I GI++ARVH+V+PD    +++ +  +ASV++R  +P    +     I+ 
Sbjct: 114 SEELSHTVSQIDGILSARVHVVLPDNDLLKRVISPSSASVLVR-FDPRTDINVLIPQIKT 172

Query: 194 LVAAAVPNLDMGDVTVL 210
           LVA  +  L    V+V 
Sbjct: 173 LVANGISGLGYDGVSVT 189


>gi|254186712|ref|ZP_04893228.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|254263992|ref|ZP_04954857.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 1710a]
 gi|157934396|gb|EDO90066.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|254214994|gb|EET04379.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 1710a]
          Length = 269

 Score =  120 bits (300), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 6/186 (3%)

Query: 30  LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDNGSS---ISV 85
           LV  +L + A   + +     LY  L   DVN + VAL E  +D  + S +G     ++V
Sbjct: 6   LVVRLLGVLALSVLLAGCKKELYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLNV 65

Query: 86  PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145
               +  A   L  +GLP S  +    LF K      T   + I  +  +  E++ T+  
Sbjct: 66  DGDQLVHAMEVLRTRGLPRSKFDDLGNLFKKD-GLVSTPTEERIRFIYGMSQELSSTLSK 124

Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDM 204
           I G++ ARV IV+P+     +     +A+V I+    +   +    I+ LV  +V  L  
Sbjct: 125 IDGVLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTY 184

Query: 205 GDVTVL 210
             V+V 
Sbjct: 185 DQVSVT 190


>gi|167742984|ref|ZP_02415758.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 14]
          Length = 274

 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 6/186 (3%)

Query: 30  LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDNGSS---ISV 85
           LV  +L + A   + +     LY  L   DVN + VAL E  +D  + S +G     ++V
Sbjct: 11  LVVRLLGVLALSVLLAGCKKELYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLNV 70

Query: 86  PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145
               +  A   L  +GLP S  +    LF K      T   + I  +  +  E++ T+  
Sbjct: 71  DGDQLVHAMEVLRTRGLPRSKFDDLGNLFKKD-GLVSTPTEERIRFIYGMSQELSSTLSK 129

Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDM 204
           I G++ ARV IV+P+     +     +A+V I+    +   +    I+ LV  +V  L  
Sbjct: 130 IDGVLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTY 189

Query: 205 GDVTVL 210
             V+V 
Sbjct: 190 DQVSVT 195


>gi|188992467|ref|YP_001904477.1| HrcJ protein [Xanthomonas campestris pv. campestris str. B100]
 gi|167734227|emb|CAP52435.1| HrcJ protein [Xanthomonas campestris pv. campestris]
          Length = 254

 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 6/165 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106
           LY  L  +D N +   L  A +D      D+G + +V  P   V  A   L   G+P   
Sbjct: 23  LYSGLTENDANDMLAVLLTAGVDAEKLTPDDGKTWAVNAPHDQVAYALNVLRTHGMPHER 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             +  E+F K      T   + +  +  +  ++++T+ +I G++AA V IV+P+      
Sbjct: 83  HANLGEMFKKD-GLISTPTEERVRFIYGVSQQLSQTLSNIDGVIAADVQIVLPNNDPLSA 141

Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
                +A+V I+    S   S   +I+ LV  +V  L   +V+V 
Sbjct: 142 SVKPSSAAVFIKFRVGSDLTSLVPSIKTLVMHSVEGLTYENVSVT 186


>gi|167915298|ref|ZP_02502389.1| type III secretion associated protein [Burkholderia pseudomallei
           112]
          Length = 262

 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 48/193 (24%), Positives = 81/193 (41%), Gaps = 15/193 (7%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDNGS 81
           + L  V+ + ++L               LY  L   DVN + VAL E  +D  + S +G 
Sbjct: 1   MRLLGVLALSVLLAGCK---------KELYTGLSEQDVNEMMVALLENGVDASKDSADGG 51

Query: 82  S---ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
               ++V    +  A   L  +GLP S  +    LF K      T   + I  +  +  E
Sbjct: 52  KSWKLNVDGDQLVHAMEVLRTRGLPRSKFDDLGNLFKKD-GLVSTPTEERIRFIYGMSQE 110

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAA 197
           ++ T+  I G++ ARV IV+P+     +     +A+V I+    +   +    I+ LV  
Sbjct: 111 LSSTLSKIDGVLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMH 170

Query: 198 AVPNLDMGDVTVL 210
           +V  L    V+V 
Sbjct: 171 SVEGLTYDQVSVT 183


>gi|126442940|ref|YP_001062988.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Burkholderia pseudomallei 668]
 gi|126458134|ref|YP_001075935.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Burkholderia pseudomallei 1106a]
 gi|167828530|ref|ZP_02460001.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 9]
 gi|226199084|ref|ZP_03794646.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei Pakistan 9]
 gi|242313688|ref|ZP_04812705.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 1106b]
 gi|254183797|ref|ZP_04890389.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 1655]
 gi|254193806|ref|ZP_04900238.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei S13]
 gi|254301608|ref|ZP_04969052.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 406e]
 gi|126222431|gb|ABN85936.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 668]
 gi|126231902|gb|ABN95315.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 1106a]
 gi|157811474|gb|EDO88644.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 406e]
 gi|169650557|gb|EDS83250.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei S13]
 gi|184214330|gb|EDU11373.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 1655]
 gi|225928859|gb|EEH24884.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei Pakistan 9]
 gi|242136927|gb|EES23330.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 1106b]
          Length = 269

 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 6/186 (3%)

Query: 30  LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDNGSS---ISV 85
           LV  +L + A   + +     LY  L   DVN + VAL E  +D  + S +G     ++V
Sbjct: 6   LVVRLLGVLALSVLLAGCKKELYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLNV 65

Query: 86  PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145
               +  A   L  +GLP S  +    LF K      T   + I  +  +  E++ T+  
Sbjct: 66  DGDQLVHAMEVLRTRGLPRSKFDDLGNLFKKD-GLVSTPTEERIRFIYGMSQELSSTLSK 124

Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDM 204
           I G++ ARV IV+P+     +     +A+V I+    +   +    I+ LV  +V  L  
Sbjct: 125 IDGVLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTY 184

Query: 205 GDVTVL 210
             V+V 
Sbjct: 185 DQVSVT 190


>gi|21230690|ref|NP_636607.1| HrcJ protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66769315|ref|YP_244077.1| HrcJ protein [Xanthomonas campestris pv. campestris str. 8004]
 gi|21112279|gb|AAM40531.1| HrcJ protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66574647|gb|AAY50057.1| HrcJ protein [Xanthomonas campestris pv. campestris str. 8004]
          Length = 254

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 6/165 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106
           LY  L  +D N +   L  A +D      D+G + +V  P   V  A   L   G+P   
Sbjct: 23  LYSGLTENDANDMLAVLLTAGVDAEKLTPDDGKTWAVNAPHDQVAYALNVLRTHGMPHER 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             +  E+F K      T   + +  +  +  ++++T+ +I G++AA V IV+P+      
Sbjct: 83  HANLGEMFKKD-GLISTPTEERVRFIYGVSQQLSQTLSNIDGVIAADVQIVLPNNDPLSA 141

Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
                +A+V I+    S   S   +I+ LV  +V  L   +V+V 
Sbjct: 142 SVKPSSAAVFIKFRVGSDLTSLVPSIKTLVMHSVEGLTYENVSVT 186


>gi|167898597|ref|ZP_02485998.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 7894]
 gi|237509740|ref|ZP_04522455.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei MSHR346]
 gi|235001945|gb|EEP51369.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei MSHR346]
          Length = 269

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 6/186 (3%)

Query: 30  LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDNGSS---ISV 85
           LV  +L + A   + +     LY  L   DVN + VAL E  +D  + S +G     ++V
Sbjct: 6   LVVRLLGVLALSVLLAGCKKELYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLNV 65

Query: 86  PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145
               +  A   L  +GLP S  +    LF K      T   + I  +  +  E++ T+  
Sbjct: 66  DGDQLVHAMEVLRTRGLPRSKFDDLGNLFKKD-GLVSTPTEERIRFIYGMSQELSSTLSK 124

Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDM 204
           I G++ ARV IV+P+     +     +A+V I+    +   +    I+ LV  +V  L  
Sbjct: 125 IDGVLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTY 184

Query: 205 GDVTVL 210
             V+V 
Sbjct: 185 DQVSVT 190


>gi|237800789|ref|ZP_04589250.1| type III secretion component [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331023647|gb|EGI03704.1| type III secretion component [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 259

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 77/165 (46%), Gaps = 7/165 (4%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF--RISDNGS-SISVPSSMVGKARIHLAAQGLPSSSS 107
           LY  L   + N +   L    I    ++ DNG   + V      +A   L   GLP  + 
Sbjct: 27  LYTNLGEREANAMLAVLLRDGIPASRKVQDNGQLKVMVDEKRFAEAMAALDDAGLPGQTF 86

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
           ++  E+F K N    +   +    V AL  E++ T+  I GI++ARVH+V+PD    +++
Sbjct: 87  SNMGEVF-KGNGLVSSPVQERAQMVYALSEELSHTVSQIDGILSARVHVVLPDNDLLKRV 145

Query: 168 GARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVL 210
            +  +ASV++R  +P    +     I+ LVA  +  L    V+V 
Sbjct: 146 ISPSSASVLVR-YDPRTDINVLIPQIKTLVANGISGLGYDGVSVT 189


>gi|331008651|gb|EGH88707.1| type III secretion component [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 259

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 87/197 (44%), Gaps = 14/197 (7%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RI 76
             R  +L  +I+  +   + A          +LY  L   + N +   L    I    ++
Sbjct: 2   PKRRRVLRLLIVATLASLLQACDI-------DLYTNLGEREANAMLAVLLRDGIPASRKV 54

Query: 77  SDNGS-SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135
            DNG   + V      +A   L   GLP  S ++  E+F K N    +   +    V AL
Sbjct: 55  QDNGQLKVMVDEKRFAQAMAALDDAGLPGQSFSNMGEVF-KGNGLVSSPVQERAQMVYAL 113

Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA--EAIRH 193
             E++ T+  I GI++ARVH+V+PD    +++ +  +ASV++R  +P    +     I+ 
Sbjct: 114 SEELSHTVSQIDGILSARVHVVLPDNDLLKRVISPSSASVLVR-FDPRTDINVLIPQIKT 172

Query: 194 LVAAAVPNLDMGDVTVL 210
           LVA  +  L    V+V 
Sbjct: 173 LVANGISGLGYDGVSVT 189


>gi|76818699|ref|YP_335583.1| lipoprotein transmembrane protein [Burkholderia pseudomallei 1710b]
 gi|76583172|gb|ABA52646.1| lipoprotein transmembrane protein [Burkholderia pseudomallei 1710b]
          Length = 262

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 48/193 (24%), Positives = 81/193 (41%), Gaps = 15/193 (7%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDNGS 81
           + L  V+ + ++L               LY  L   DVN + VAL E  +D  + S +G 
Sbjct: 1   MRLLGVLALSVLLAGCK---------KELYTGLSEQDVNEMMVALLENGVDASKDSADGG 51

Query: 82  S---ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
               ++V    +  A   L  +GLP S  +    LF K      T   + I  +  +  E
Sbjct: 52  KSWKLNVDGDQLVHAMEVLRTRGLPRSKFDDLGNLFKKD-GLVSTPTEERIRFIYGMSQE 110

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAA 197
           ++ T+  I G++ ARV IV+P+     +     +A+V I+    +   +    I+ LV  
Sbjct: 111 LSSTLSKIDGVLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMH 170

Query: 198 AVPNLDMGDVTVL 210
           +V  L    V+V 
Sbjct: 171 SVEGLTYDQVSVT 183


>gi|167820155|ref|ZP_02451835.1| type III secretion associated protein [Burkholderia pseudomallei
           91]
          Length = 262

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 48/193 (24%), Positives = 81/193 (41%), Gaps = 15/193 (7%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDNGS 81
           + L  V+ + ++L               LY  L   DVN + VAL E  +D  + S +G 
Sbjct: 1   MRLLGVLALSVLLAGCK---------KELYTGLSEQDVNEMMVALLENGVDASKDSADGG 51

Query: 82  S---ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
               ++V    +  A   L  +GLP S  +    LF K      T   + I  +  +  E
Sbjct: 52  KSWKLNVDGDQLVHAMEVLRTRGLPRSKFDDLGNLFKKD-GLVSTPTEERIRFIYGMSQE 110

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAA 197
           ++ T+  I G++ ARV IV+P+     +     +A+V I+    +   +    I+ LV  
Sbjct: 111 LSSTLSKIDGVLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMH 170

Query: 198 AVPNLDMGDVTVL 210
           +V  L    V+V 
Sbjct: 171 SVEGLTYDQVSVT 183


>gi|167724015|ref|ZP_02407251.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei DM98]
 gi|167849989|ref|ZP_02475497.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei B7210]
          Length = 262

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 48/193 (24%), Positives = 81/193 (41%), Gaps = 15/193 (7%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDNGS 81
           + L  V+ + ++L               LY  L   DVN + VAL E  +D  + S +G 
Sbjct: 1   MRLLGVLALSVLLAGCK---------KELYTGLSEQDVNEMMVALLENGVDASKDSADGG 51

Query: 82  S---ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
               ++V    +  A   L  +GLP S  +    LF K      T   + I  +  +  E
Sbjct: 52  KSWKLNVDGDQLVHAMEVLRTRGLPRSKFDDLGNLFKKD-GLVSTPTEERIRFIYGMSQE 110

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAA 197
           ++ T+  I G++ ARV IV+P+     +     +A+V I+    +   +    I+ LV  
Sbjct: 111 LSSTLSKIDGVLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMH 170

Query: 198 AVPNLDMGDVTVL 210
           +V  L    V+V 
Sbjct: 171 SVEGLTYDQVSVT 183


>gi|330985209|gb|EGH83312.1| type III secretion component [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 259

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 86/197 (43%), Gaps = 14/197 (7%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RI 76
             R  +L  +I+  +   +            +LY  L   + N +   L    I    ++
Sbjct: 2   PKRRRVLRLLIVATLASLLQTCDI-------DLYTNLGEREANAMLAVLLRDGIPASRKV 54

Query: 77  SDNGS-SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135
            DNG   + V      +A   L   GLP  S ++  E+F K N    +   +    V AL
Sbjct: 55  QDNGQLKVMVDEKRFAQAMAALDDAGLPGQSFSNMGEVF-KGNGLVSSPVQERAQMVYAL 113

Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA--EAIRH 193
             E++ T+  I GI++ARVH+V+PD    +++ +  +ASV++R  +P    +     I+ 
Sbjct: 114 SEELSHTVSQIDGILSARVHVVLPDNDLLKRVISPSSASVLVR-FDPRTDINVLIPQIKT 172

Query: 194 LVAAAVPNLDMGDVTVL 210
           LVA  +  L    V+V 
Sbjct: 173 LVANGISGLGYDGVSVT 189


>gi|302185345|ref|ZP_07262018.1| putative type III secretion protein [Pseudomonas syringae pv.
           syringae 642]
 gi|256259415|gb|ACU65052.1| HrcJ [Pseudomonas syringae pv. syringae]
          Length = 276

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 84/187 (44%), Gaps = 8/187 (4%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMV 90
           + +               L+ KL  +D N +   LS  +I+   R +  G S+ + +S +
Sbjct: 8   LGMIGLVLLLSACGDEIELHGKLSENDANDVIAELSSKHIEATKRSNKEGVSVLLSASDI 67

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
            +A   L A GLP  +  +  E+F K      T   +    + AL  E+  T+  I G++
Sbjct: 68  NRAVRVLEAAGLPRRTRTNLGEIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVI 126

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTV 209
            ARVH+V+P+  +  +     +A+V I+        +    IR +V++++P +       
Sbjct: 127 VARVHVVLPERVAPGEPVQPASAAVFIKHAASLDPDTVLPRIRRMVSSSIPGM----AGA 182

Query: 210 LDSTGKL 216
           LD+T KL
Sbjct: 183 LDNTEKL 189


>gi|254469855|ref|ZP_05083260.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Pseudovibrio sp. JE062]
 gi|211961690|gb|EEA96885.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Pseudovibrio sp. JE062]
          Length = 267

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 78/165 (47%), Gaps = 5/165 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLPSS 105
            +LY  L   + N +   L E  +  +   + D   ++ V    + +A   L A GLP  
Sbjct: 21  TDLYTNLSEQEANTMLSLLLENGVSAQKVGLGDGLVTLQVDDDDIQRAVTILNANGLPKR 80

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
           + ++  ++F K +    + F + I  + AL  E++ TI  I GIV+ARVHIV+P+     
Sbjct: 81  ARDTLGQVFQK-SGIISSPFEERIRFIYALSEEVSETITEIDGIVSARVHIVLPEKADLG 139

Query: 166 KIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209
           +     +A++ I+       +     I+ LV+ A+  ++   V+V
Sbjct: 140 EEVKPSSAAIFIKHRPEFDIEFLIPQIKRLVSNAIEGVEYASVSV 184


>gi|71734790|ref|YP_274723.1| type III secretion component [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|71555343|gb|AAZ34554.1| type III secretion component, putative [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320324510|gb|EFW80587.1| type III secretion component, putative [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320328370|gb|EFW84373.1| type III secretion component, putative [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330882195|gb|EGH16344.1| type III secretion component [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 259

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 87/197 (44%), Gaps = 14/197 (7%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RI 76
             R  +L  +I+  +   + A          +LY  L   + N +   L    I    ++
Sbjct: 2   PKRRRVLRLLIVATLASLLQACDI-------DLYTNLGEREANAMLAVLLRDGIPASRKV 54

Query: 77  SDNGS-SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135
            DNG   + V      +A   L   GLP  S ++  E+F K N    +   +    V AL
Sbjct: 55  QDNGQLKVMVDEKRFAQAMAALDDAGLPGQSFSNMGEVF-KGNGLVSSPVQERAQMVYAL 113

Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA--EAIRH 193
             E++ T+  I GI++ARVH+V+PD    +++ +  +ASV++R  +P    +     I+ 
Sbjct: 114 SEELSHTVSQIDGILSARVHVVLPDNDLLKRVISPSSASVLVR-FDPRTDINVLIPQIKT 172

Query: 194 LVAAAVPNLDMGDVTVL 210
           LVA  +  L    V+V 
Sbjct: 173 LVANGISGLGYDGVSVT 189


>gi|282890725|ref|ZP_06299245.1| type III secretion lipoprotein SctJ [Parachlamydia acanthamoebae
           str. Hall's coccus]
 gi|281499318|gb|EFB41617.1| type III secretion lipoprotein SctJ [Parachlamydia acanthamoebae
           str. Hall's coccus]
          Length = 304

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/199 (25%), Positives = 82/199 (41%), Gaps = 17/199 (8%)

Query: 28  VILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI---DFRISDNGSS-- 82
            I+  + LF++     +      +   +   D N I V L+  NI       S+ G +  
Sbjct: 4   TIVKIVYLFISLFLLTSCSSERTIVHGIREQDANEIIVFLNSKNIESTKVESSEGGGTGP 63

Query: 83  -------ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135
                  I VP +    A   L  +GLP     S  ++F   +S   +   + I     L
Sbjct: 64  QKAVFWDIQVPENKAMDAMSFLDEEGLPRKHQESLLDIFGS-SSLVPSETQERIRYQAGL 122

Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARP-TASVMIRAINPSVYKSAE---AI 191
             +IA TI+ I G++ A V I  P+        + P TASV I+        +++    I
Sbjct: 123 AQQIANTIKEIDGVIDANVMISFPEENPITGTTSGPITASVYIKHNGILDDPNSQLRSKI 182

Query: 192 RHLVAAAVPNLDMGDVTVL 210
           R LVAA+V  L   +VT++
Sbjct: 183 RQLVAASVTGLKYDNVTII 201


>gi|146305070|ref|YP_001185535.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Pseudomonas mendocina ymp]
 gi|145573271|gb|ABP82803.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Pseudomonas mendocina ymp]
          Length = 272

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 74/164 (45%), Gaps = 4/164 (2%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPS 104
              +L+  L   D N +  +L E  I  R      G  ++V ++ + +A   L A GLP 
Sbjct: 20  DRTDLFSGLSELDANEVIASLGEHRISARKRAEKAGVVVTVDTAEINRAVRVLEAAGLPR 79

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
            +  S  E+F K      T   +    + AL  E+  T+  I G++ ARVH+V+P+  + 
Sbjct: 80  RARTSLGEIFKKEGVI-STPLEERARYIYALSQELESTLSQIDGVIVARVHVVLPERIAP 138

Query: 165 RKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDV 207
            +     +A+V I+        + +  I+ +V +++P L    V
Sbjct: 139 GEPVQPASAAVFIKHAASLEPDAVQRRIQQMVVSSIPGLASTGV 182


>gi|120609169|ref|YP_968847.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Acidovorax citrulli AAC00-1]
 gi|58700620|gb|AAW81011.1| HrcJ [Acidovorax citrulli]
 gi|120587633|gb|ABM31073.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Acidovorax citrulli AAC00-1]
          Length = 287

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 74/165 (44%), Gaps = 6/165 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSMVGKARIHLAAQGLPSSS 106
           LY K   +D N +  AL E+ ID     SD G +  + V  S V ++   L + GLP   
Sbjct: 35  LYTKQTEADANDMVAALLESGIDAGKATSDAGKTWNVQVEKSDVVRSLAVLRSYGLPRER 94

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             +  E+F K      T   + +  +  +  ++  T+  I G+V ARV IV+P+      
Sbjct: 95  HATLGEMF-KKEGLISTPTEERVRFIYGVAQQLEATLSQIDGVVTARVQIVLPNNDPLAS 153

Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
                +ASV I+    +        I+++VA +V  L   +VTV 
Sbjct: 154 TVKPASASVFIKYRESANIAGLTAGIKNMVARSVEGLTYENVTVT 198


>gi|289624381|ref|ZP_06457335.1| type III secretion component, putative [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289646620|ref|ZP_06477963.1| type III secretion component, putative [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330868635|gb|EGH03344.1| type III secretion component [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 259

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 87/197 (44%), Gaps = 14/197 (7%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RI 76
             R  +L  +I+  +   + A          +LY  L   + N +   L    I    ++
Sbjct: 2   PKRRRVLRLLIVATLASLLQACDI-------DLYTNLGEREANAMLAVLLRDGIPASRKV 54

Query: 77  SDNGS-SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135
            DNG   + V      +A   L   GLP  S ++  E+F K N    +   +    V AL
Sbjct: 55  QDNGQLKVMVDEKRFVQAMAALDDAGLPGQSFSNMGEIF-KGNGLVSSPVQERAQMVYAL 113

Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA--EAIRH 193
             E++ T+  I GI++ARVH+V+PD    +++ +  +ASV++R  +P    +     I+ 
Sbjct: 114 SEELSHTVSQIDGILSARVHVVLPDNDLLKRVISPSSASVLVR-FDPRTDINVLIPQIKT 172

Query: 194 LVAAAVPNLDMGDVTVL 210
           LVA  +  L    V+V 
Sbjct: 173 LVANGISGLGYDGVSVT 189


>gi|13475299|ref|NP_106863.1| nodulation protein NOLT [Mesorhizobium loti MAFF303099]
 gi|14026050|dbj|BAB52649.1| nodulation protein; NolT [Mesorhizobium loti MAFF303099]
          Length = 279

 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 5/166 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANI-DFRIS--DNGSSISVPSSMVGKARIHLAAQGLPSS 105
            +LY +L+  + N +   L +  +   R++  D  S++ V   ++  +   L  +GLP  
Sbjct: 26  VDLYTQLQEREANEMLALLMDNGVHAVRVAAKDGTSTVQVDEKLLAYSIDLLNGKGLPRQ 85

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
           S  +  E+F + +    +   +    V AL  E++RTI  I G+ + RVH+V+P     R
Sbjct: 86  SFKNLGEIF-QGSGLIASPTEERARYVYALSEELSRTISDIDGVFSVRVHVVLPHNDLLR 144

Query: 166 KIGARPTASVMIRA-INPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
                 +ASV IR      +      I+ LVA ++  L    V V+
Sbjct: 145 AGATPSSASVFIRHDAKADLSVLLPKIKMLVADSIEGLSYDKVEVV 190


>gi|300693814|ref|YP_003749787.1| type III secretion system lipoprotein hrcj [Ralstonia solanacearum
           PSI07]
 gi|299075851|emb|CBJ35160.1| Type III secretion system lipoprotein HrcJ [Ralstonia solanacearum
           PSI07]
          Length = 269

 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 82/197 (41%), Gaps = 15/197 (7%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS- 77
           R R   L   + +  +L               L+ +L  +D N +   L +A +D + + 
Sbjct: 8   RLRRGALVVALALTTLLAGCN---------KQLFAQLTEADANDMLTVLLQAGVDAQKTS 58

Query: 78  -DNGSS--ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134
            D+G +  + V      ++   L A GLP     +  ++F K      T   + +  +  
Sbjct: 59  PDDGKTWSVLVDDDAFARSMEVLHAHGLPREKYANLGDIFKKD-GLISTPTEERVRFIYG 117

Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRH 193
           +  ++++T+  I G+  A V IV+P+      +    +ASV I+    +   S   +I++
Sbjct: 118 VSQQLSQTLSRIDGVAVASVQIVLPNNDPLASVVKPSSASVFIKYRPTANVTSLLPSIKN 177

Query: 194 LVAAAVPNLDMGDVTVL 210
           LV  +V  L   +V V 
Sbjct: 178 LVVHSVEGLTYENVAVT 194


>gi|134282581|ref|ZP_01769285.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 305]
 gi|134246138|gb|EBA46228.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 305]
          Length = 269

 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 6/186 (3%)

Query: 30  LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDNGSS---ISV 85
           LV  +L + A   + +     LY  L   DVN + VAL E  +D  + S +G     ++V
Sbjct: 6   LVVRLLGVLALSVLLAGCKKELYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLNV 65

Query: 86  PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145
               +  A   L  +GLP S  +    LF K      T   + I  +  +  E++ T+  
Sbjct: 66  DGDQLVHAMEVLRTRGLPRSKFDDLGNLFKKD-GLVSTPTEERIRFIYGMSQELSSTLSK 124

Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDM 204
           I G++ ARV IV+P+     +     +A+V I+    +   +    I+ LV  +V  L  
Sbjct: 125 IDGVLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALTPQIKTLVMHSVEGLTY 184

Query: 205 GDVTVL 210
             V+V 
Sbjct: 185 DQVSVT 190


>gi|300310135|ref|YP_003774227.1| type III secretion HrcJ lipoprotein [Herbaspirillum seropedicae
           SmR1]
 gi|300072920|gb|ADJ62319.1| type III secretion HrcJ lipoprotein [Herbaspirillum seropedicae
           SmR1]
          Length = 292

 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 80/175 (45%), Gaps = 8/175 (4%)

Query: 48  YDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSS 105
              L   L  +D N I + L+   I+   +   +G ++ V    + +A   + A GLP  
Sbjct: 26  MVVLQAALNDADANEIILVLNRKGIEVDKQKGKDGVTLLVKDVELSRATETMNAAGLPRR 85

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
           S ++  E+F K      +   + I  +  L  E+  T+     +V+ARVH+V+P+  +  
Sbjct: 86  SLSNLGEVF-KKQGMISSPMEERIRYIHGLSEELESTMLQFDHVVSARVHVVLPERIAPG 144

Query: 166 KIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGD----VTVLDSTGK 215
           +     +A+V ++   P    +    IR LVA+++P L   D    V+V+   G+
Sbjct: 145 EPIQPSSAAVFVKYRPPLDEDAVMPRIRRLVASSIPGLASEDGRSKVSVVMMPGE 199


>gi|166714023|ref|ZP_02245230.1| HrpB3 [Xanthomonas oryzae pv. oryzicola BLS256]
 gi|61219462|gb|AAX40639.1| HrpB3 [Xanthomonas oryzae pv. oryzicola]
          Length = 254

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 43/181 (23%), Positives = 79/181 (43%), Gaps = 6/181 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106
           LY  L  +D N +   L  A +D      D+G + +V  PS  V  +   L A GLP   
Sbjct: 23  LYSGLTENDANAMLEVLLHAGVDASKVTPDDGKTWAVNAPSDQVSYSLETLRAHGLPHER 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             +  E+F K      T   + +  +  +  ++++T+ +I G+++A V IV+P+      
Sbjct: 83  HANLGEMFKKD-GLISTPTEERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPNNDPLAT 141

Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN 225
                +A+V I+    S   S    I+ +V  +V  L   +V+V    G   +  ++  +
Sbjct: 142 SVKPSSAAVFIKFRVGSDLTSMVPNIKTMVMHSVEGLTYENVSVTLVPGGAESDAQLAAS 201

Query: 226 I 226
            
Sbjct: 202 A 202


>gi|319795607|ref|YP_004157247.1| type III secretion apparatus lipoprotein, yscj/hrcj family
           [Variovorax paradoxus EPS]
 gi|315598070|gb|ADU39136.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Variovorax paradoxus EPS]
          Length = 267

 Score =  117 bits (293), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 5/162 (3%)

Query: 52  YVKLEVSDVNRISVALSEANIDF---RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108
           +  L   + N I VAL+   ID    R+      + V  S +G A   L AQGLP+    
Sbjct: 38  FSNLNEVEANEIVVALAAEGIDASKTRLEGTNWQVDVEESRMGTALEILRAQGLPAERYA 97

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           S  ++F K      T   + +  + A+  E+A+T++++ G+VAARVH+V+P         
Sbjct: 98  SMGDVFQK-QGLVSTPSEERMRYIYAVSQELAQTLRTVDGVVAARVHVVIPANDPLSDKL 156

Query: 169 ARPTASVMIRAINP-SVYKSAEAIRHLVAAAVPNLDMGDVTV 209
              +A+V I+      +   + A++ +VA ++  L    V++
Sbjct: 157 RPSSAAVFIKHRPDVDIRLLSSALKDMVAHSIEGLSHEQVSL 198


>gi|149178729|ref|ZP_01857312.1| probable polar flagellar M-ring protein FliF [Planctomyces maris
           DSM 8797]
 gi|148842427|gb|EDL56807.1| probable polar flagellar M-ring protein FliF [Planctomyces maris
           DSM 8797]
          Length = 538

 Score =  117 bits (293), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 97/575 (16%), Positives = 189/575 (32%), Gaps = 68/575 (11%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNL--YVKLEVSD 59
            I  Q    F++ +   R    IL SV L+ ++ F    F  +   Y +L         +
Sbjct: 6   KIYQQFSNLFQTMSGSQR---AILLSVPLLMMLAFGFLFFRDSQSSYVSLSLGKDFTTEE 62

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
           V      L  A +    S  G  I VP + V +    L   G   +   S ++   + +S
Sbjct: 63  VIHAEEVLLRAGLT-DFSRKGQRIMVPQNEVPRYNAALIEGGGLPTDWASEWQEQFEKSS 121

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIR 178
             ++    ++ R  AL  ++ R I++I  I  A V          +       TA+VM++
Sbjct: 122 MFVSKDQLQVMRDIALGNQLRRMIRAIPAIEDASVMWARSKKRLRWNNTTPEVTATVMVK 181

Query: 179 AINPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDS-TGKLLTANEMERNILGKSLSIVQ 235
                        ++R  V+  VP+L    VTV D  TG   TA++       K +S V 
Sbjct: 182 PRPGRELTPVLVTSLRAAVSTMVPDLTTDSVTVFDQSTGTSFTADDKNEAFDSKFISWVN 241

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
                 +  I  +L+    V    +  V  L    ++ +EI  D    ++   + ++ + 
Sbjct: 242 KHTKNYQDKILDSLSYIPDVIVNVNVDVENLKRYVERKQEISTDGSVTLQSKEQSTERSL 301

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINT-----KSIATTHD 350
             + ++ E       N P      + + R  E  +K  E +N                  
Sbjct: 302 VEKPTRAE--PGARSNQP----NSLAVARGNEKNEKVTETNNEATTAPSFTWTEKEFVAA 355

Query: 351 NYKLERLSIAV------VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG------- 397
                ++S+++       V   R  +     AD        A I   V  +         
Sbjct: 356 MPSTVQVSVSIPEDYYSAVALKRGIKKGEAEADIAAFKQATAAIQTEVETSIQKHVQKLI 415

Query: 398 INSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457
            +    D +++ S   ++ ++          +      + + +   +F +  L   ++  
Sbjct: 416 PSQSATDAVSVASYVRVDAEVPEIALPLTESVGEFVSQWGSTLGLGLFAIWAL---WM-- 470

Query: 458 HALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS 517
                  N    +  EV  + I  P                  +DS+ ++     +   +
Sbjct: 471 ------LNKSMPQMEEVNSEEIDLPL--------------KRPVDSTPEEESVKPKKEPT 510

Query: 518 RINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
           +            +  ++  N E  A +L KW  S
Sbjct: 511 Q---------RDEVQLLVRDNPEVAAMVLSKWIHS 536


>gi|78045985|ref|YP_362160.1| HrcJ protein [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|325927680|ref|ZP_08188908.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Xanthomonas perforans 91-118]
 gi|462305|sp|P80152|HRB3_XANEU RecName: Full=Protein hrpB3; Flags: Precursor
 gi|398111|gb|AAA27604.1| hrpB3 [Xanthomonas campestris]
 gi|984880|gb|AAB08458.1| HrpB3 [Xanthomonas euvesicatoria]
 gi|78034415|emb|CAJ22060.1| HrcJ protein [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|325541881|gb|EGD13395.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Xanthomonas perforans 91-118]
          Length = 253

 Score =  117 bits (293), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 6/165 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106
           LY  L  +D N +   L  A +D      D+G + +V  P   V  +   L A GLP   
Sbjct: 23  LYSGLTENDANDMLEVLLHAGVDASKVTPDDGKTWAVNAPHDQVSYSLEVLRAHGLPHER 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             +  E+F K      T   + +  +  +  ++++T+ +I G+++A V IV+P+      
Sbjct: 83  HANLGEMFKKD-GLISTPTEERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPNNDPLST 141

Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
                +A+V I+    S   S    I+ LV  +V  L   +V+V 
Sbjct: 142 SVKPSSAAVFIKFRVGSDLTSLVPNIKTLVMHSVEGLTYENVSVT 186


>gi|323388146|gb|ADX60342.1| inner/outer membrane type III secretion protein RscJ [Pseudomonas
           fluorescens]
          Length = 268

 Score =  117 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 82/171 (47%), Gaps = 8/171 (4%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
             L+ +L   + N +   L++  I  +   + +G  + V +S + +A   L A GLP  +
Sbjct: 24  VELHSRLSEQEANEVVAELADKQIRAQKVPAKDGVVVRVNASDISRAVRTLEAAGLPKLA 83

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            ++  ++F K      T   +    + AL  E+  T+ +I G++ ARVH+V+P+  +  +
Sbjct: 84  RSTLGDIFRKEGVI-STPLEERARYIYALSQELEATLSNIDGVIVARVHVVLPERIAPGE 142

Query: 167 IGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVLDSTGKL 216
                +ASV I+        +    +R +VA+++P +       +++T KL
Sbjct: 143 PVQPASASVFIKHDPRLEPDNIRPRVRRMVASSIPGMAA----AVENTQKL 189


>gi|307264867|ref|ZP_07546429.1| Flagellar M-ring domain protein [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306920125|gb|EFN50337.1| Flagellar M-ring domain protein [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 250

 Score =  117 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 55/310 (17%), Positives = 106/310 (34%), Gaps = 68/310 (21%)

Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIRLSKDAQRSETSQPESAV 306
             G  N        LN D +    I Y P     +  + RSI+  K+  ++  +Q  S+ 
Sbjct: 1   MFGPGNVVVRANVTLNFDKKTQDTIEYLPVQGNDNKGIVRSIQELKE--KATGTQGGSSP 58

Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
               N P V+           +  + E   NYEIN    +      K+E +S+AVVVN  
Sbjct: 59  GTSSNNPPVAST---TGNGTSDYSRTETTINYEINQIKTSLVQAQGKIESISVAVVVN-- 113

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT---ITITSMDFLENQLFNSGT 423
                      Q   +S   +I  +V+ A G     GD+   +++  + F ++ L  +  
Sbjct: 114 -----------QNLNNSMKQQIADLVTKAAG-----GDSLVKVSVQGIQFNQD-LLKTMQ 156

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
            Q      +  +   ++ ALV   G  L+    +   ++  ++  A++  +     + P 
Sbjct: 157 QQAKVSKGVPVYVWAILAALVLGGGLFLI---MMRRKKKETSLTTAEQEVLATVEPIEP- 212

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
                                              I+     +   ++  +I+   E   
Sbjct: 213 --------------------------------IEEIDFSEKDEKKKQIERLIKEKPELVV 240

Query: 544 KILRKWARSE 553
           +++R W   E
Sbjct: 241 QVIRTWLNEE 250


>gi|21311402|gb|AAM46696.1|AF448202_7 HrcJ [Erwinia chrysanthemi]
          Length = 245

 Score =  117 bits (292), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 4/166 (2%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHL 97
              V       L+  L  +D N +  AL   +I      +  G SI +    + +A   L
Sbjct: 1   MLIVGCGDRVELHRGLSENDANEVIAALGGYHIGAEKRTDKAGVSILIDVKDMERAVNIL 60

Query: 98  AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
            A GLP  +  +  ++F K      T   +    + AL  E+  T+  I G++ ARVH+V
Sbjct: 61  NAAGLPRQARTNLGQVFQKTGVI-STPLEERARYIYALSQEVESTLTQIDGVLVARVHVV 119

Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNL 202
           +P+  +  +     +A+V I+        S E  IR +VA+++P L
Sbjct: 120 LPERIAPGEPIQPASAAVFIKYRPELEPDSIEPRIRRMVASSIPGL 165


>gi|221200558|ref|ZP_03573600.1| bcscJ [Burkholderia multivorans CGD2M]
 gi|221209215|ref|ZP_03582206.1| bcscJ [Burkholderia multivorans CGD2]
 gi|221170905|gb|EEE03361.1| bcscJ [Burkholderia multivorans CGD2]
 gi|221179899|gb|EEE12304.1| bcscJ [Burkholderia multivorans CGD2M]
          Length = 293

 Score =  117 bits (292), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 74/170 (43%), Gaps = 10/170 (5%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDNG--------SSISVPSSMVGKARIHLAAQ 100
             LY  L   D N++   L +A I     ++           +SV    +  A   L A 
Sbjct: 34  KELYSGLSEHDANQMIAVLGDAGISASKDNDARDASDRNAWQVSVADGDMQSALTVLQAN 93

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP  S  S  ELF K      T   + +  +  +  +++RT+Q I G++ ARV +V+P+
Sbjct: 94  GLPKPSYASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSRTLQDIEGVIVARVQVVIPE 152

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209
                      +A+V IR       ++ A  ++ LVA ++  L   +V++
Sbjct: 153 NDPLADKIKPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 202


>gi|38639339|gb|AAR25805.1| BcscJ [Burkholderia multivorans E243]
          Length = 293

 Score =  117 bits (292), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 74/170 (43%), Gaps = 10/170 (5%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDNG--------SSISVPSSMVGKARIHLAAQ 100
             LY  L   D N++   L +A I     ++           +SV    +  A   L A 
Sbjct: 34  KELYSGLSEHDANQMIAVLGDAGISASKDNDARDASDRNAWQVSVADGDMQSALTVLQAN 93

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP  S  S  ELF K      T   + +  +  +  +++RT+Q I G++ ARV +V+P+
Sbjct: 94  GLPKPSYASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSRTLQDIEGVIVARVQVVIPE 152

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209
                      +A+V IR       ++ A  ++ LVA ++  L   +V++
Sbjct: 153 NDPLADKIKPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 202


>gi|323143306|ref|ZP_08077997.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Succinatimonas hippei YIT 12066]
 gi|322416923|gb|EFY07566.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Succinatimonas hippei YIT 12066]
          Length = 252

 Score =  117 bits (292), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 47/193 (24%), Positives = 77/193 (39%), Gaps = 13/193 (6%)

Query: 25  LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI---SDNGS 81
           L S +++  ML    R        + LY  L  SD N +   L +  +D +      NG 
Sbjct: 6   LGSAVILSAMLLCGCR--------EALYSNLTESDANEMLSTLLQRGVDAKKISEGKNGF 57

Query: 82  SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
           +I V    + ++   +    LP     S   +F        +   ++     AL  E++ 
Sbjct: 58  TIEVDEQDLVRSLEIIKEHSLPREQFQSLGSVF-SGQGMISSQTEEQARLAYALSQELSA 116

Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS-VYKSAEAIRHLVAAAVP 200
           T   I G++ ARVH+V+        +   P+A+V IR    S V     +I+   A +VP
Sbjct: 117 TFSRIDGVLDARVHVVLVQHEQSSGVTTPPSAAVFIRHTKESPVVDMISSIKDTTARSVP 176

Query: 201 NLDMGDVTVLDST 213
            L    V V+  T
Sbjct: 177 GLTHDRVAVMTET 189


>gi|219566957|dbj|BAH04988.1| Hrp conserved lipoprotein transmembrane protein [Ralstonia
           solanacearum]
          Length = 269

 Score =  117 bits (292), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 82/197 (41%), Gaps = 15/197 (7%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS- 77
           R R   L   + +  +L               L+ +L  +D N +   L +A ID + + 
Sbjct: 8   RLRRGALVVALALTTLLAGCN---------KQLFAQLTEADANDMLTVLLQAGIDAQKTS 58

Query: 78  -DNGSS--ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134
            D+G +  + V      ++   L A GLP     +  ++F K      T   + +  +  
Sbjct: 59  PDDGKTWSVLVDDDAFARSMEVLHAHGLPREKYANLGDIFKKD-GLISTPTEERVRFIYG 117

Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRH 193
           +  ++++T+  I G+  A V IV+P+      +    +ASV I+    +   +   +I++
Sbjct: 118 VSQQLSQTLSRIDGVAVASVQIVLPNNDPLASVVKPSSASVFIKYRPTANVTALLPSIKN 177

Query: 194 LVAAAVPNLDMGDVTVL 210
           LV  +V  L   +V V 
Sbjct: 178 LVVHSVEGLTYENVAVT 194


>gi|30524897|gb|AAP34342.1|AF499777_10 HrcJ [Xanthomonas axonopodis pv. glycines]
          Length = 253

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 6/165 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF-RISDN---GSSISVPSSMVGKARIHLAAQGLPSSS 106
           LY  L  +D N +   L  A +D  +++ +     +I+ P   V  +   L A GLP   
Sbjct: 23  LYSGLTENDANDMLEVLLHAGVDASKVTPDDGKTWAINAPHDQVSYSLEVLRAHGLPHER 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             +  E+F K      T   + +  +  +  ++++T+ +I G+++A V IV+P+      
Sbjct: 83  HANLGEMFKKD-GLISTPTEERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPNNDPLST 141

Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
                +A+V I+    S   S    I+ LV  +V  L   +V+V 
Sbjct: 142 SVKPSSAAVFIKFRVGSDLTSLVPNIKTLVMHSVEGLTYENVSVT 186


>gi|310766432|gb|ADP11382.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
           pathway-hrcJ protein [Erwinia sp. Ejp617]
          Length = 259

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 4/159 (2%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPS 104
               L   L  +D N ++  L   +I      + +G ++ V ++ + +A   L A GLP 
Sbjct: 22  DQVELNHGLTENDANEVAAELGRYHIQAEKLANKDGITVMVDAAELNRAVHILDAAGLPR 81

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
            +  +  E+F K N    T   +    + AL  E+  T+  I G++ ARVH+V+P+  + 
Sbjct: 82  PARTNLGEVFQK-NGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAP 140

Query: 165 RKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNL 202
            +     +A+V I+          E  IR +VA+++P L
Sbjct: 141 GEPVQPASAAVFIKYRPDLDPDIIEPRIRRMVASSLPGL 179


>gi|188532680|ref|YP_001906477.1| HrcJ protein (hrp cluster) [Erwinia tasmaniensis Et1/99]
 gi|188027722|emb|CAO95575.1| HrcJ protein (hrp cluster) [Erwinia tasmaniensis Et1/99]
          Length = 257

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 4/161 (2%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISD--NGSSISVPSSMVGKARIHLAAQGLPS 104
               L   L  +D N ++  L   +I     +  +G ++ V +  + +A   L A GLP 
Sbjct: 22  DRVELNHGLTENDANEVAAELGRYHIQAEKRNNKDGITVLVNAEELNRAVHILDAAGLPR 81

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
            +  +  E+F K N    T   +    + AL  E+  T+  I G++ ARVH+V+P+  + 
Sbjct: 82  PARTNLGEVFQK-NGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAP 140

Query: 165 RKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDM 204
            +     +A+V I+          E  IR +VA+++P L  
Sbjct: 141 GEPVQPASAAVFIKYRPDLDPDVIEPRIRRMVASSLPGLAA 181


>gi|221209594|ref|ZP_03582575.1| bcscJ [Burkholderia multivorans CGD1]
 gi|221170282|gb|EEE02748.1| bcscJ [Burkholderia multivorans CGD1]
          Length = 293

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 74/170 (43%), Gaps = 10/170 (5%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDNG--------SSISVPSSMVGKARIHLAAQ 100
             LY  L   D N++   L +A I     ++           +SV    +  A   L A 
Sbjct: 34  KELYSGLSEHDANQMIAVLGDAGISASKDNDARDASDRNAWQVSVADGDMQSALTVLQAN 93

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP  S  S  ELF K      T   + +  +  +  +++RT+Q I G++ ARV +V+P+
Sbjct: 94  GLPKPSYASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSRTLQDIEGVIVARVQVVIPE 152

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209
                      +A+V IR       ++ A  ++ LVA ++  L   +V++
Sbjct: 153 NDPLADKIKPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 202


>gi|259909704|ref|YP_002650060.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
           pathway-hrcJ protein [Erwinia pyrifoliae Ep1/96]
 gi|76152302|gb|ABA39803.1| HrcJ [Erwinia pyrifoliae]
 gi|224965326|emb|CAX56858.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
           pathway-hrcJ protein [Erwinia pyrifoliae Ep1/96]
 gi|283479790|emb|CAY75706.1| Type III secretion inner-membreane protein HrcJ [Erwinia pyrifoliae
           DSM 12163]
          Length = 259

 Score =  116 bits (291), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 4/159 (2%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPS 104
               L   L  +D N ++  L   +I      + +G ++ V ++ + +A   L A GLP 
Sbjct: 22  DQVELNHGLTENDANEVAAELGRYHIQAEKLANKDGITVMVDAAELNRAVHILDAAGLPR 81

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
            +  +  E+F K N    T   +    + AL  E+  T+  I G++ ARVH+V+P+  + 
Sbjct: 82  PARTNLGEVFQK-NGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAP 140

Query: 165 RKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNL 202
            +     +A+V I+          E  IR +VA+++P L
Sbjct: 141 GEPVQPASAAVFIKYRPDLDPDIIEPRIRRMVASSLPGL 179


>gi|300697469|ref|YP_003748130.1| type III secretion system lipoprotein HrcJ [Ralstonia solanacearum
           CFBP2957]
 gi|299074193|emb|CBJ53738.1| Type III secretion system lipoprotein HrcJ [Ralstonia solanacearum
           CFBP2957]
          Length = 269

 Score =  116 bits (291), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 81/197 (41%), Gaps = 15/197 (7%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS- 77
           R R   L   + +  +L               L+ +L   D N +   L +A ID + + 
Sbjct: 8   RLRRGALVVALALTTLLAGCN---------KQLFAQLTEVDANDMLTVLLQAGIDAQKTS 58

Query: 78  -DNGSS--ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134
            D+G +  + V      ++   L A GLP     +  ++F K      T   + +  +  
Sbjct: 59  PDDGKTWSVLVDDEAFARSMEVLHAHGLPREKYANLGDIFKKD-GLISTPTEERVRFIYG 117

Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRH 193
           +  ++++T+  I G+  A V IV+P+      +    +ASV I+    +   +   +I++
Sbjct: 118 VSQQLSQTLSRIDGVAVANVQIVLPNNDPLASVVKPSSASVFIKYRPTANVTALLPSIKN 177

Query: 194 LVAAAVPNLDMGDVTVL 210
           LV  +V  L   +V V 
Sbjct: 178 LVVHSVEGLTYENVAVT 194


>gi|207724588|ref|YP_002254985.1| hrp lipoprotein hrcj [Ralstonia solanacearum MolK2]
 gi|206589810|emb|CAQ36771.1| hrp conserved lipoprotein hrcj [Ralstonia solanacearum MolK2]
          Length = 268

 Score =  116 bits (291), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 81/197 (41%), Gaps = 15/197 (7%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS- 77
           R R   L   + +  +L               L+ +L   D N +   L +A ID + + 
Sbjct: 7   RLRRGALVVALALTTLLAGCN---------KQLFAQLTEVDANDMLTVLLQAGIDAQKTT 57

Query: 78  -DNGSS--ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134
            D+G +  + V      ++   L A GLP     +  ++F K      T   + +  +  
Sbjct: 58  PDDGKTWSVLVDDEAFARSMEVLHAHGLPREKYANLGDIFKKD-GLISTPTEERVRFIYG 116

Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRH 193
           +  ++++T+  I G+  A V IV+P+      +    +ASV I+    +   +   +I++
Sbjct: 117 VSQQLSQTLSRIDGVAVANVQIVLPNNDPLASVVKPSSASVFIKYRPTANVTALLPSIKN 176

Query: 194 LVAAAVPNLDMGDVTVL 210
           LV  +V  L   +V V 
Sbjct: 177 LVVHSVEGLTYENVAVT 193


>gi|17549088|ref|NP_522428.1| Hrp conserved lipoprotein HRCJ transmembrane [Ralstonia
           solanacearum GMI1000]
 gi|6066708|emb|CAB58254.1| HrpI protein [Ralstonia solanacearum]
 gi|17431339|emb|CAD18018.1| hrp conserved lipoprotein hrcj transmembrane [Ralstonia
           solanacearum GMI1000]
 gi|1097287|prf||2113360N hrpI gene
          Length = 269

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 82/197 (41%), Gaps = 15/197 (7%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS- 77
           R R   L   + +  +L               L+ +L  +D N +   L +A ID + + 
Sbjct: 8   RLRRGALVVALALTTLLAGCN---------KQLFAQLTEADANDMLTVLLQAGIDAQKTS 58

Query: 78  -DNGSS--ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134
            D+G +  + V      ++   L A GLP     +  ++F K      T   + +  +  
Sbjct: 59  PDDGKTWSVLVDDDAFARSMEVLHAHGLPREKYANLGDIFKKD-GLISTPTEERVRFIYG 117

Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRH 193
           +  ++++T+  I G+  A V IV+P+      +    +ASV I+    +   +   +I++
Sbjct: 118 VSQQLSQTLSRIDGVAVASVQIVLPNNDPLASVVKPSSASVFIKYRPTANVTALLPSIKN 177

Query: 194 LVAAAVPNLDMGDVTVL 210
           LV  +V  L   +V V 
Sbjct: 178 LVVHSVEGLTYENVAVT 194


>gi|299069234|emb|CBJ40494.1| Type III secretion system lipoprotein HrcJ [Ralstonia solanacearum
           CMR15]
          Length = 269

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 81/197 (41%), Gaps = 15/197 (7%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS- 77
           R R   L   + +  +L               L+ +L  +D N +   L +A ID + + 
Sbjct: 8   RLRRGALVVALALTTLLAGCN---------KQLFAQLTEADANDMLTVLLQAGIDAQKTS 58

Query: 78  -DNGSS--ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134
            D+G +  + V      ++   L   GLP     +  ++F K      T   + +  +  
Sbjct: 59  PDDGKTWSVLVDDDAFARSMEVLHGHGLPREKYANLGDIFKKD-GLISTPTEERVRFIYG 117

Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRH 193
           +  ++++T+  I G+  A V IV+P+      +    +ASV I+    +   +   +I++
Sbjct: 118 VSQQLSQTLSRIDGVAVASVQIVLPNNDPLASVVKPSSASVFIKYRPTANVTALLPSIKN 177

Query: 194 LVAAAVPNLDMGDVTVL 210
           LV  +V  L   +V V 
Sbjct: 178 LVVHSVEGLTYENVAVT 194


>gi|207739223|ref|YP_002257616.1| hrp lipoprotein hrcj [Ralstonia solanacearum IPO1609]
 gi|206592596|emb|CAQ59502.1| hrp conserved lipoprotein hrcj [Ralstonia solanacearum IPO1609]
          Length = 267

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 81/197 (41%), Gaps = 15/197 (7%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS- 77
           R R   L   + +  +L               L+ +L   D N +   L +A ID + + 
Sbjct: 6   RLRRGALVVALALTTLLAGCN---------KQLFAQLTEVDANDMLTVLLQAGIDAQKTT 56

Query: 78  -DNGSS--ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134
            D+G +  + V      ++   L A GLP     +  ++F K      T   + +  +  
Sbjct: 57  PDDGKTWSVLVDDEAFARSMEVLHAHGLPREKYANLGDIFKKD-GLISTPTEERVRFIYG 115

Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRH 193
           +  ++++T+  I G+  A V IV+P+      +    +ASV I+    +   +   +I++
Sbjct: 116 VSQQLSQTLSRIDGVAVANVQIVLPNNDPLASVVKPSSASVFIKYRPTANVTALLPSIKN 175

Query: 194 LVAAAVPNLDMGDVTVL 210
           LV  +V  L   +V V 
Sbjct: 176 LVVHSVEGLTYENVAVT 192


>gi|294625833|ref|ZP_06704449.1| HrcJ protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|159024050|gb|ABW87278.1| HrcJ [Xanthomonas fuscans subsp. fuscans]
 gi|292599861|gb|EFF43982.1| HrcJ protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 253

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 6/165 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106
           LY  L  +D N +   L  A +D      D+G + +V  P   V  +   L A GLP   
Sbjct: 23  LYSGLTENDANDMLEVLLHAGVDASKVTPDDGKTWAVNAPHDQVSYSLEVLRAHGLPHER 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             +  E+F K      T   + +  +  +  ++++T+ +I G+++A V IV+P+      
Sbjct: 83  HANLGEMFKKD-GLISTPTEERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPNNDPLST 141

Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
                +A+V I+    S   S    I+ LV  +V  L   +V+V 
Sbjct: 142 SVKPSSAAVFIKFRVGSDLTSLVPNIKTLVMHSVEGLTYENVSVT 186


>gi|83747854|ref|ZP_00944887.1| HrcJ [Ralstonia solanacearum UW551]
 gi|83725501|gb|EAP72646.1| HrcJ [Ralstonia solanacearum UW551]
          Length = 269

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 81/197 (41%), Gaps = 15/197 (7%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS- 77
           R R   L   + +  +L               L+ +L   D N +   L +A ID + + 
Sbjct: 8   RLRRGALVVALALTTLLAGCN---------KQLFAQLTEVDANDMLTVLLQAGIDAQKTT 58

Query: 78  -DNGSS--ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134
            D+G +  + V      ++   L A GLP     +  ++F K      T   + +  +  
Sbjct: 59  PDDGKTWSVLVDDEAFARSMEVLHAHGLPREKYANLGDIFKKD-GLISTPTEERVRFIYG 117

Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRH 193
           +  ++++T+  I G+  A V IV+P+      +    +ASV I+    +   +   +I++
Sbjct: 118 VSQQLSQTLSRIDGVAVANVQIVLPNNDPLASVVKPSSASVFIKYRPTANVTALLPSIKN 177

Query: 194 LVAAAVPNLDMGDVTVL 210
           LV  +V  L   +V V 
Sbjct: 178 LVVHSVEGLTYENVAVT 194


>gi|161520293|ref|YP_001583720.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Burkholderia multivorans ATCC 17616]
 gi|189353528|ref|YP_001949155.1| type III secretion protein SctJ [Burkholderia multivorans ATCC
           17616]
 gi|160344343|gb|ABX17428.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia multivorans ATCC 17616]
 gi|189337550|dbj|BAG46619.1| type III secretion protein SctJ [Burkholderia multivorans ATCC
           17616]
          Length = 293

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 74/170 (43%), Gaps = 10/170 (5%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDNG--------SSISVPSSMVGKARIHLAAQ 100
             LY  L   D N++   L +A I     ++           +SV    +  A   L A 
Sbjct: 34  KELYSGLSEHDANQMIAVLGDAGISASKDNDARDASDRNAWQVSVADGDMQSALTVLQAN 93

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP  S  S  ELF K      T   + +  +  +  +++RT+Q I G++ ARV +V+P+
Sbjct: 94  GLPKPSYASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSRTLQDIEGVIVARVQVVIPE 152

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209
                      +A+V IR       ++ A  ++ LVA ++  L   +V++
Sbjct: 153 NDPLADKIKPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 202


>gi|89111146|dbj|BAE80236.1| HrcJ [Acidovorax avenae subsp. avenae]
          Length = 287

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 6/165 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF-RISDN---GSSISVPSSMVGKARIHLAAQGLPSSS 106
           LY +   +D N +  AL E+ ID  + S +     ++ V  S V ++   L + GLP   
Sbjct: 35  LYTRQTEADANDMVAALLESGIDAGKASADAGKTWNVQVEKSDVVRSLAVLRSYGLPRER 94

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             +  E+F K      T   + +  +  +  ++  T+  I G+V ARV IV+P+      
Sbjct: 95  HATLGEMF-KKEGLISTPTEERVRFIYGVAQQLEATLSQIDGVVTARVQIVLPNNDPLAS 153

Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
                +ASV I+    +        I+++VA +V  L   +VTV 
Sbjct: 154 TVKPASASVFIKYRESANIAGLTAGIKNMVARSVEGLTYENVTVT 198


>gi|289663765|ref|ZP_06485346.1| HrcJ protein [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 254

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 6/165 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106
           LY  L  +D N +   L  A +D      D+G + +V  P   V  +   L A G+P   
Sbjct: 23  LYSGLTENDANDMLAVLLRAGVDASKVTPDDGKTWAVNAPRDQVAYSLDVLRAHGMPHER 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             +  E+F K      T   + +  +  +  ++++T+ +I G++AA V IV+P+      
Sbjct: 83  HANLGEMFKKD-GLISTPTEERVRFIYGVSQQLSQTLSNIDGVIAADVEIVLPNNDPLST 141

Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
                +A+V I+    S   S    I+ LV  +V  L   +V+V 
Sbjct: 142 SVKPSSAAVFIKFRLGSDLTSLVPNIKTLVMHSVEGLTYENVSVT 186


>gi|58579711|ref|YP_198727.1| HrpB3 [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84621745|ref|YP_449117.1| HrcJ protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|7350916|gb|AAF61284.1| HrpB3 [Xanthomonas oryzae pv. oryzae]
 gi|9711586|dbj|BAB07855.1| HrpB3 [Xanthomonas oryzae pv. oryzae]
 gi|24251290|gb|AAN46409.1| HrpB3 [Xanthomonas oryzae pv. oryzae]
 gi|50428349|dbj|BAD29986.1| HrcJ [Xanthomonas oryzae pv. oryzae]
 gi|58424305|gb|AAW73342.1| HrpB3 [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84365685|dbj|BAE66843.1| HrcJ protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 253

 Score =  115 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 6/165 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106
           LY  L  +D N +   L  A +D      D+G + +V  P   V  +   L A GLP   
Sbjct: 22  LYSGLTENDANDMLEVLLHAGVDASKVTPDDGKTWAVNAPHDQVSYSLEALRAHGLPHER 81

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             +  E+F K      T   + +  +  +  ++++T+ +I G+++A V IV+P+      
Sbjct: 82  HANLGEMFKKD-GLISTPTEERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPNNDPLAT 140

Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
                +A+V I+    S   S    I+ +V  +V  L   +V+V 
Sbjct: 141 SVKPSSAAVFIKFRVGSDLTSLVPNIKTMVMHSVEGLTYENVSVT 185


>gi|289668187|ref|ZP_06489262.1| HrcJ protein [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 246

 Score =  115 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 6/165 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106
           LY  L  +D N +   L  A +D      D+G + +V  P   V  +   L A G+P   
Sbjct: 15  LYSGLTENDANDMLAVLLRAGVDASKVTPDDGKTWAVNAPRDQVAYSLDVLRAHGMPHER 74

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             +  E+F K      T   + +  +  +  ++++T+ +I G++AA V IV+P+      
Sbjct: 75  HANLGEMFKKD-GLISTPTEERVRFIYGVSQQLSQTLSNIDGVIAADVEIVLPNNDPLST 133

Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
                +A+V I+    S   S    I+ LV  +V  L   +V+V 
Sbjct: 134 SVKPSSAAVFIKFRLGSDLTSLVPNIKTLVMHSVEGLTYENVSVT 178


>gi|188574352|ref|YP_001911281.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188518804|gb|ACD56749.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 246

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 6/165 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106
           LY  L  +D N +   L  A +D      D+G + +V  P   V  +   L A GLP   
Sbjct: 15  LYSGLTENDANDMLEVLLHAGVDASKVTPDDGKTWAVNAPHDQVSYSLEALRAHGLPHER 74

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             +  E+F K      T   + +  +  +  ++++T+ +I G+++A V IV+P+      
Sbjct: 75  HANLGEMFKKD-GLISTPTEERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPNNDPLAT 133

Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
                +A+V I+    S   S    I+ +V  +V  L   +V+V 
Sbjct: 134 SVKPSSAAVFIKFRVGSDLTSLVPNIKTMVMHSVEGLTYENVSVT 178


>gi|21241182|ref|NP_640764.1| HrcJ protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|21106489|gb|AAM35300.1| HrcJ protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 253

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 6/165 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF-RISDN---GSSISVPSSMVGKARIHLAAQGLPSSS 106
           LY  L  +D N +   L  A +D  +++ +     +I+ P   V  +   L A GLP   
Sbjct: 23  LYSGLTENDANDMLEVLLHAGVDASKVTPDDGKTWAINAPHDQVSYSLEVLRAHGLPHER 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             +  E+F K      T   + +  +  +  ++++T+ +I G+++A V IV+P+      
Sbjct: 83  HANLGEMFKKD-GLISTPTEERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPNNDPLST 141

Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
                +A+V I+    S   S    I+ LV  +V  L   +V+V 
Sbjct: 142 SVKPSSAAVFIKFRVGSDLTSLLPNIKTLVMHSVEGLTYENVSVT 186


>gi|2935534|gb|AAC38609.1| BscJ [Bordetella bronchiseptica]
          Length = 274

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 4/164 (2%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSS 106
             L      ++ N +  AL EA I  +      G ++SVP+  V ++   L A GLP   
Sbjct: 33  VELLGAAPENEANEVLAALLEAGIAAQKQSGKAGYAVSVPAEAVARSLEILRASGLPREQ 92

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            +    +F K      +   +    + AL  E+A T+  I G+++ARVH+V+P+ G+  +
Sbjct: 93  FDGMGRIFRKE-GLVSSPLEERARYIYALSQELADTLSQIDGVLSARVHVVLPERGAVGE 151

Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209
                TA V ++  +     +    IR LV  A+P L    V+V
Sbjct: 152 PATPSTAGVFLKYRDGQSLDALVPEIRKLVTHAIPGLAEDRVSV 195


>gi|33600610|ref|NP_888170.1| putative type III secretion protein [Bordetella bronchiseptica
           RB50]
 gi|33568209|emb|CAE32122.1| putative type III secretion protein [Bordetella bronchiseptica
           RB50]
          Length = 274

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 4/164 (2%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSS 106
             L      ++ N +  AL EA I  +      G ++SVP+  V ++   L A GLP   
Sbjct: 33  VELLGAAPENEANEVLAALLEAGIAAQKQSGKAGYAVSVPAEAVARSLEILRASGLPREQ 92

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            +    +F K      +   +    + AL  E+A T+  I G+++ARVH+V+P+ G+  +
Sbjct: 93  FDGMGRIFRKE-GLVSSPLEERARYIYALSQELADTLSQIDGVLSARVHVVLPERGAVGE 151

Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209
                TA V ++  +     +    IR LV  A+P L    V+V
Sbjct: 152 PATPSTAGVFLKYRDGQSLDALVPEIRKLVTHAIPGLAEDRVSV 195


>gi|33593247|ref|NP_880891.1| putative type III secretion protein [Bordetella pertussis Tohama I]
 gi|29603227|emb|CAC79572.1| bscJ [Bordetella pertussis Tohama I]
 gi|33563622|emb|CAE42523.1| putative type III secretion protein [Bordetella pertussis Tohama I]
 gi|332382656|gb|AEE67503.1| putative type III secretion protein [Bordetella pertussis CS]
          Length = 274

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 4/164 (2%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSS 106
             L      ++ N +  AL EA I  +      G ++SVP+  V ++   L A GLP   
Sbjct: 33  VELLGAAPENEANEVLAALLEAGIAAQKQSGKAGYAVSVPAEAVARSLEILRASGLPREQ 92

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            +    +F K      +   +    + AL  E+A T+  I G+++ARVH+V+P+ G+  +
Sbjct: 93  FDGMGRIFRKE-GLVSSPLEERARYIYALSQELADTLSQIDGVLSARVHVVLPERGAVGE 151

Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209
                TA V ++  +     +    IR LV  A+P L    V+V
Sbjct: 152 PATPSTAGVFLKYRDGQSLDALVPEIRKLVTHAIPGLAEDRVSV 195


>gi|33596836|ref|NP_884479.1| putative type III secretion protein [Bordetella parapertussis
           12822]
 gi|33573537|emb|CAE37528.1| putative type III secretion protein [Bordetella parapertussis]
          Length = 274

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 4/164 (2%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSS 106
             L      ++ N +  AL EA I  +      G ++SVP+  V ++   L A GLP   
Sbjct: 33  VELLGAAPENEANEVLAALLEAGIAAQKQSGKAGYAVSVPAEAVARSLEILRASGLPREQ 92

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            +    +F K      +   +    + AL  E+A T+  I G+++ARVH+V+P+ G+  +
Sbjct: 93  FDGMGRIFRKE-GLVSSPLEERARYIYALSQELADTLSQIDGVLSARVHVVLPERGAVGE 151

Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209
                TA V ++  +     +    IR LV  A+P L    V+V
Sbjct: 152 PATPSTAGVFLKYRDGQSLDALVPEIRKLVTHAIPGLAEDRVSV 195


>gi|294665985|ref|ZP_06731248.1| HrcJ protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292604233|gb|EFF47621.1| HrcJ protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 253

 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 6/165 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106
           LY  L  +D N +   L  A +D      D+G + +V  P   V  +   L A GLP   
Sbjct: 23  LYSGLTENDANDMLEVLLHAGVDASKVTPDDGKTWAVNAPHDQVSYSLEVLRAHGLPHER 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             +  E+F K      T   + +  +  +  ++++T+ +I G+++A V IV+P+      
Sbjct: 83  HANLGEMFKKD-GLISTPTEERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPNNDPLST 141

Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
                +A+V I+    S   S    I+ LV  +V  L   +V+V 
Sbjct: 142 SVKPSSAAVFIKFRVGSDLTSLVPNIKTLVMHSVEGLTYENVSVT 186


>gi|292487032|ref|YP_003529902.1| type III secretion inner-membreane protein HrcJ [Erwinia amylovora
           CFBP1430]
 gi|292900583|ref|YP_003539952.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|1336088|gb|AAB49174.1| HrcJ [Erwinia amylovora]
 gi|291200431|emb|CBJ47559.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|291552449|emb|CBA19494.1| Type III secretion inner-membreane protein HrcJ [Erwinia amylovora
           CFBP1430]
          Length = 260

 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 4/159 (2%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPS 104
               L   L  +D N ++  L   +I      +  G ++ V ++ + +A   L A GLP 
Sbjct: 22  DQVELNHGLTENDANEVAAELGRYHIQAEKLTNKEGITVLVDAAELNRAVHILDAAGLPR 81

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
            +  +  E+F K N    T   +    + AL  E+  T+  I G++ ARVH+V+P+  + 
Sbjct: 82  PARTNLGEVFQK-NGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAP 140

Query: 165 RKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNL 202
            +     +A+V I+          E  IR +VA+++P L
Sbjct: 141 GEPVQPASAAVFIKYRPDLDPDVIEPRIRRMVASSLPGL 179


>gi|326315351|ref|YP_004233023.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|89111179|dbj|BAE80268.1| HrcJ [Acidovorax avenae subsp. avenae]
 gi|323372187|gb|ADX44456.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 287

 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 6/165 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSMVGKARIHLAAQGLPSSS 106
           L+ +   +D N +  AL E+ ID     SD G +  + V  S V ++   L + GLP   
Sbjct: 35  LFTRQTEADANDMVAALLESGIDAGKATSDAGKTWNVQVEKSDVVRSLAVLRSYGLPRER 94

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             +  E+F K      T   + +  +  +  ++  T+  I G+V ARV IV+P+      
Sbjct: 95  HATLGEMF-KKEGLISTPTEERVRFIYGVAQQLEATLSQIDGVVTARVQIVLPNNDPLAS 153

Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
                +A+V I+    +        I+++VA +V  L   +VTV 
Sbjct: 154 TVKPASAAVFIKYRESANIAGLTAGIKNMVARSVEGLTYENVTVT 198


>gi|313650159|gb|EFS14572.1| flagellar M-ring domain protein [Shigella flexneri 2a str. 2457T]
 gi|332756093|gb|EGJ86446.1| flagellar M-ring protein domain protein [Shigella flexneri 4343-70]
 gi|332757293|gb|EGJ87630.1| flagellar M-ring protein domain protein [Shigella flexneri 2747-71]
 gi|332757503|gb|EGJ87838.1| flagellar M-ring protein domain protein [Shigella flexneri K-671]
 gi|332766675|gb|EGJ96879.1| flagellar M-ring family protein [Shigella flexneri 2930-71]
 gi|333003355|gb|EGK22901.1| flagellar M-ring protein domain protein [Shigella flexneri K-218]
 gi|333017575|gb|EGK36887.1| flagellar M-ring protein domain protein [Shigella flexneri K-304]
          Length = 205

 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 62/162 (38%), Gaps = 12/162 (7%)

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTD-----KKEEQSNYEINTKSIATTHDNYK 353
           ++QP  A     + P  +        S  +       ++ E SNYE++     T  +   
Sbjct: 2   SNQPAPANNAPISTPPTNQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGD 61

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           ++RLS+AVVVN   L +           +  + +I  +   A G + +RGD++ + +  F
Sbjct: 62  VQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEALTREAMGFSEKRGDSLNVVNSPF 117

Query: 414 L---ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452
               E+        Q  F+D L      ++ A        + 
Sbjct: 118 NSSDESGGALPFWQQQVFIDQLLAAGRWLLVAGTAGGVVAVA 159


>gi|325917018|ref|ZP_08179257.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Xanthomonas vesicatoria ATCC 35937]
 gi|325536769|gb|EGD08526.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Xanthomonas vesicatoria ATCC 35937]
          Length = 254

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 76/165 (46%), Gaps = 6/165 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF-RISDN---GSSISVPSSMVGKARIHLAAQGLPSSS 106
           LY  L  +D N +   L  A +D  +++ +     +I+ P + V  +   L A G+P   
Sbjct: 23  LYSGLTENDANDMLAVLLTAGVDAEKVTPDDGKTWAINAPHAQVAYSLEVLRAHGMPHER 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             +  E+F K      T   + +  +  +  ++++T+ +I G++AA V IV+P+      
Sbjct: 83  HANLGEMFKKD-GLISTPTEERVRFIYGVSQQLSQTLSNIDGVIAADVEIVLPNNDPLST 141

Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
                +A+V I+    S   S   +I+ LV  +V  L   +V+V 
Sbjct: 142 SVKPSSAAVFIKFRVGSDLTSLVPSIKTLVMHSVEGLTYENVSVT 186


>gi|167923131|ref|ZP_02510222.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei BCC215]
          Length = 243

 Score =  114 bits (286), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 6/164 (3%)

Query: 52  YVKLEVSDVNRISVALSEANIDF-RISDNGSS---ISVPSSMVGKARIHLAAQGLPSSSS 107
           Y  L   DVN + VAL E  +D  + S +G     ++V    +  A   L  +GLP S  
Sbjct: 2   YTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLNVDGDQLVHAMEVLRTRGLPRSKF 61

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
           +    LF K      T   + I  +  +  E++ T+  I G++ ARV IV+P+     + 
Sbjct: 62  DDLGNLFKKD-GLVSTPTEERIRFIYGMSQELSSTLSKIDGVLVARVQIVLPNNDPLAQT 120

Query: 168 GARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
               +A+V I+    +   +    I+ LV  +V  L    V+V 
Sbjct: 121 AKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTYDQVSVT 164


>gi|312171103|emb|CBX79362.1| Type III secretion inner-membreane protein HrcJ [Erwinia amylovora
           ATCC BAA-2158]
          Length = 260

 Score =  114 bits (286), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 4/159 (2%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPS 104
               L   L  +D N ++  L   +I      +  G ++ V ++ + +A   L A GLP 
Sbjct: 22  DQVELNHGLTENDANEVAAELGRYHIQAEKLTNKEGITVLVDAAELNRAVHILDAAGLPR 81

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
            +  +  E+F K N    T   +    + AL  E+  T+  I G++ ARVH+V+P+  + 
Sbjct: 82  PARTNLGEVFQK-NGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAP 140

Query: 165 RKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNL 202
            +     +A+V I+          E  IR +VA+++P L
Sbjct: 141 GEPVQPASAAVFIKYRPDLDPDVIEPRIRRMVASSLPGL 179


>gi|271500435|ref|YP_003333460.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Dickeya
           dadantii Ech586]
 gi|270343990|gb|ACZ76755.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Dickeya
           dadantii Ech586]
          Length = 268

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 4/159 (2%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPS 104
               L+  L  +D N +  AL   +I      +  G SI +    + ++   L A GLP 
Sbjct: 24  DRVELHRGLSENDANEVIAALGGYHIGAEKRTDKAGVSILIDVKDMERSVNILNAAGLPR 83

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
            +  +  ++F K      T   +    + AL  E+  T+  I G++ ARVH+V+P+  + 
Sbjct: 84  QARTNLGQVFQKTGVI-STPLEERARYIYALSQEVESTLTQIDGVLVARVHVVLPERIAP 142

Query: 165 RKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNL 202
            +     +A+V I+        S E  IR +VA+++P L
Sbjct: 143 GEPIQPASAAVFIKYRPELEPDSIEPRIRRMVASSIPGL 181


>gi|326794378|ref|YP_004312198.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Marinomonas mediterranea MMB-1]
 gi|326545142|gb|ADZ90362.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Marinomonas mediterranea MMB-1]
          Length = 265

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 74/165 (44%), Gaps = 6/165 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108
           L+ KL   D N +   L+  +I+   + +  G ++ V +S + +A   L A GLP     
Sbjct: 26  LHKKLSEEDANEVIAELASRHIEAEKKATKEGVTVLVEASSMARAVRILEAAGLPRKPRA 85

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           +  E+F K      +   +    + AL  E+  TI  I GI+ ARVH+V+P+  +  +  
Sbjct: 86  NFGEVFKKEGVI-SSPLEERARYIYALSQELESTISQIDGILIARVHVVLPERIAPGEAV 144

Query: 169 ARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNL--DMGDVTVL 210
              +++V I+             I  LV  ++P L      ++V+
Sbjct: 145 QPASSAVFIKHRPDLDPDVIRPRIERLVRTSIPGLSEKPDKLSVV 189


>gi|297748689|gb|ADI51235.1| type III secretion cytoplasmic membrane protein SctJ [Chlamydia
           trachomatis D-EC]
 gi|297749569|gb|ADI52247.1| type III secretion cytoplasmic membrane protein SctJ [Chlamydia
           trachomatis D-LC]
          Length = 333

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 52/195 (26%), Positives = 81/195 (41%), Gaps = 19/195 (9%)

Query: 34  MLFMAARFFVNSPHYDNLYV-KLEVSDVNRISVALSEANIDFRI-----SDNGSS----- 82
           + F+ A FF ++    ++    L   D N I V L    +  +      S  G S     
Sbjct: 17  LFFILALFFCSACDSRSMITHGLSGRDANEIVVLLVSKGVAAQKVPQAASSTGGSGEQLW 76

Query: 83  -ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
            ISVP++ + +A   L   GLP     S  +LF K      +   ++I     L  ++A 
Sbjct: 77  DISVPAAQITEALAILNQAGLPRMKGTSLLDLFAK-QGLVPSEMQEKIRYQEGLSEQMAT 135

Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEAIRHLVAAA 198
           TI+ + GIV A V I         +     TASV I+    ++         I+ LVA+A
Sbjct: 136 TIRKMDGIVDASVQISFSPEE---EDQRPLTASVYIKHRGVLDNPNSIMVSKIKRLVASA 192

Query: 199 VPNLDMGDVTVLDST 213
           VP L   +V+V+   
Sbjct: 193 VPGLCPENVSVVSDR 207


>gi|46398281|gb|AAS91835.1| AscJ [Aeromonas hydrophila]
          Length = 246

 Score =  113 bits (283), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 80/195 (41%), Gaps = 15/195 (7%)

Query: 21  RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI--DFRISD 78
           +  +L  V+   ++L               LY  +   + N +   L    I  D +   
Sbjct: 2   KRSMLMGVLCTSLLLSGCK---------VELYTGVSQKEGNEMLALLQTEGISSDKQPDK 52

Query: 79  NGSS-ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137
           +G+  + V  S V +A   L  +G P  S ++  ++F K      +   +      A   
Sbjct: 53  DGNIKLLVEESDVAQAIETLKRKGYPRESFSTLQDVFPKD-GLISSPTEERARLTYAKAQ 111

Query: 138 EIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLV 195
           EI+ T+  I G++ ARVH+V+P+    F K  +  +ASV I+        +    I+ LV
Sbjct: 112 EISNTLSEIDGVLVARVHVVLPEGNEGFNKKTSPASASVFIKHAADIQLDTYIPQIKQLV 171

Query: 196 AAAVPNLDMGDVTVL 210
             ++  L    ++V+
Sbjct: 172 NNSIEGLAYDRISVV 186


>gi|307131216|ref|YP_003883232.1| type III secretion bridge between inner and outermembrane
           lipoprotein (YscJ,HrcJ,EscJ, PscJ) [Dickeya dadantii
           3937]
 gi|306528745|gb|ADM98675.1| Type III secretion bridge between inner and outermembrane
           lipoprotein (YscJ,HrcJ,EscJ, PscJ) [Dickeya dadantii
           3937]
          Length = 236

 Score =  113 bits (283), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 4/155 (2%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108
           L+  L  +D N +  AL   +I    R    G SI +    + +A   L A GLP  +  
Sbjct: 3   LHRGLSENDANEVIAALGGYHIGAEKRTEKTGVSILIDVKDMERAVNILNAAGLPRQART 62

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           +  ++F K      T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +  
Sbjct: 63  NLGQVFQKTGVI-STPLEERARYIYALSQEVESTLTQIDGVLVARVHVVLPERIAPGEPI 121

Query: 169 ARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNL 202
              +A+V I+        S E  IR +VA+++P L
Sbjct: 122 QPASAAVFIKYRPELEPDSIEPRIRRMVASSIPGL 156


>gi|194292006|ref|YP_002007913.1| sctj: non flagellar t3S system conserved transmembrane lipoprotein.
           yscj/flif family. [Cupriavidus taiwanensis LMG 19424]
 gi|193225910|emb|CAQ71857.1| SctJ: non flagellar T3S system conserved transmembrane lipoprotein.
           yscJ/FliF family [Cupriavidus taiwanensis LMG 19424]
          Length = 262

 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 78/171 (45%), Gaps = 11/171 (6%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDF---RISDNGSS------ISVPSSMVGKARIHLAA 99
            +LY  L   + N++  AL+   ID    R   +G +      + V  S +  A   L +
Sbjct: 28  VDLYASLNEPEANQVLAALTAEGIDAEKARADTSGGTGEGQWRVRVEESQLPAALEILRS 87

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
           +GLP     S  ++F K      T   + +  + AL  E++ T+++I G+V ARVH+V+P
Sbjct: 88  EGLPGERFASLGQVFQK-QGLVATPTEERMRYIFALSQELSETLRNIDGVVTARVHVVIP 146

Query: 160 DMGSFRKIGARPTASVMIRAI-NPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209
                       +A+V I+   +  +      ++ +VA ++  +   +V++
Sbjct: 147 ATDPLSDKIRPSSAAVFIKHRADTDLRLLVPTVKDMVAHSIEGVTHDNVSL 197


>gi|15605288|ref|NP_220074.1| Yop proteins translocation lipoprotein J [Chlamydia trachomatis
           D/UW-3/CX]
 gi|76789296|ref|YP_328382.1| SctJ [Chlamydia trachomatis A/HAR-13]
 gi|237804910|ref|YP_002889064.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis B/TZ1A828/OT]
 gi|3329000|gb|AAC68161.1| Yop proteins translocation lipoprotein J [Chlamydia trachomatis
           D/UW-3/CX]
 gi|76167826|gb|AAX50834.1| SctJ [Chlamydia trachomatis A/HAR-13]
 gi|231273210|emb|CAX10123.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis B/TZ1A828/OT]
 gi|296436092|gb|ADH18266.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis G/9768]
 gi|296437020|gb|ADH19190.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis G/11222]
 gi|296437953|gb|ADH20114.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis G/11074]
 gi|297140453|gb|ADH97211.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis G/9301]
          Length = 326

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/195 (26%), Positives = 81/195 (41%), Gaps = 19/195 (9%)

Query: 34  MLFMAARFFVNSPHYDNLYV-KLEVSDVNRISVALSEANIDFRI-----SDNGSS----- 82
           + F+ A FF ++    ++    L   D N I V L    +  +      S  G S     
Sbjct: 10  LFFILALFFCSACDSRSMITHGLSGRDANEIVVLLVSKGVAAQKVPQAASSTGGSGEQLW 69

Query: 83  -ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
            ISVP++ + +A   L   GLP     S  +LF K      +   ++I     L  ++A 
Sbjct: 70  DISVPAAQITEALAILNQAGLPRMKGTSLLDLFAK-QGLVPSEMQEKIRYQEGLSEQMAT 128

Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEAIRHLVAAA 198
           TI+ + GIV A V I         +     TASV I+    ++         I+ LVA+A
Sbjct: 129 TIRKMDGIVDASVQISFSPEE---EDQRPLTASVYIKHRGVLDNPNSIMVSKIKRLVASA 185

Query: 199 VPNLDMGDVTVLDST 213
           VP L   +V+V+   
Sbjct: 186 VPGLCPENVSVVSDR 200


>gi|255348939|ref|ZP_05380946.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis 70]
 gi|255503478|ref|ZP_05381868.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis 70s]
 gi|255507156|ref|ZP_05382795.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis D(s)2923]
 gi|289525604|emb|CBJ15082.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis Sweden2]
 gi|296435164|gb|ADH17342.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis E/150]
 gi|296438884|gb|ADH21037.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis E/11023]
          Length = 326

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/195 (26%), Positives = 81/195 (41%), Gaps = 19/195 (9%)

Query: 34  MLFMAARFFVNSPHYDNLYV-KLEVSDVNRISVALSEANIDFRI-----SDNGSS----- 82
           + F+ A FF ++    ++    L   D N I V L    +  +      S  G S     
Sbjct: 10  LFFILALFFCSACDSRSMITHGLSGRDANEIVVLLVSKGVAAQKVPQAASSTGGSGEQLW 69

Query: 83  -ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
            ISVP++ + +A   L   GLP     S  +LF K      +   ++I     L  ++A 
Sbjct: 70  DISVPAAQITEALAILNQAGLPRMKGTSLLDLFAK-QGLVPSEMQEKIRYQEGLSEQMAT 128

Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEAIRHLVAAA 198
           TI+ + GIV A V I         +     TASV I+    ++         I+ LVA+A
Sbjct: 129 TIRKMDGIVDASVQISFSPEE---EDQRPLTASVYIKHRGVLDNPNSIMVSKIKRLVASA 185

Query: 199 VPNLDMGDVTVLDST 213
           VP L   +V+V+   
Sbjct: 186 VPGLCPENVSVVSDR 200


>gi|166154774|ref|YP_001654892.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis 434/Bu]
 gi|301336048|ref|ZP_07224292.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis L2tet1]
 gi|165930762|emb|CAP04259.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis 434/Bu]
          Length = 325

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/195 (26%), Positives = 81/195 (41%), Gaps = 20/195 (10%)

Query: 34  MLFMAARFFVNSPHYDNLYV-KLEVSDVNRISVALSEANIDFRI-----SDNGSS----- 82
           + F+ A FF ++    ++    L   D N I V L    +  +      S  G S     
Sbjct: 10  LFFILALFFCSACDSRSMITHGLSGRDANEIVVLLVSKGVAAQKVPQAASSTGGSGEQLW 69

Query: 83  -ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
            ISVP++ + +A   L   GLP     S  +LF K      +   ++I     L  ++A 
Sbjct: 70  DISVPAAQITEALAILNQAGLPRMKGTSLLDLFSK-QGLVPSEMQEKIRYQEGLSEQMAT 128

Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEAIRHLVAAA 198
           TI+ + GIV A V I         +     TASV I+    ++         I+ LVA+A
Sbjct: 129 TIRKMDGIVDASVQISFSPE----EDQRPLTASVYIKHRGVLDNPNSIMVSKIKRLVASA 184

Query: 199 VPNLDMGDVTVLDST 213
           VP L   +V+V+   
Sbjct: 185 VPGLYPENVSVVSDR 199


>gi|237802988|ref|YP_002888182.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis B/Jali20/OT]
 gi|231274222|emb|CAX11016.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis B/Jali20/OT]
          Length = 326

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/195 (26%), Positives = 80/195 (41%), Gaps = 19/195 (9%)

Query: 34  MLFMAARFFVNSPHYDNLYV-KLEVSDVNRISVALSEANIDFRI-----SDNGSS----- 82
           + F+ A FF ++    ++    L   D N I V L    +  +      S  G S     
Sbjct: 10  LFFILALFFCSACDSRSMITHGLSGRDANEIVVLLVSKGVAAQKVPQAASSTGGSGEQLW 69

Query: 83  -ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
            ISVP++ + +A   L   GLP     S  +LF K      +   ++I     L  ++A 
Sbjct: 70  DISVPAAQITEALAILNQAGLPRMKGTSLLDLFAK-QGLVPSEMQEKIRYQEGLSEQMAT 128

Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS---AEAIRHLVAAA 198
           TI+ + GIV A V I         +     TASV I+        +      I+ LVA+A
Sbjct: 129 TIRKMDGIVDASVQISFSPEE---EDQRPLTASVYIKYRGVLDNPNSIMVSKIKRLVASA 185

Query: 199 VPNLDMGDVTVLDST 213
           VP L   +V+V+   
Sbjct: 186 VPGLCPENVSVVSDR 200


>gi|94496761|ref|ZP_01303336.1| hrp conserved lipoprotein hrcj transmembrane [Sphingomonas sp.
           SKA58]
 gi|94423774|gb|EAT08800.1| hrp conserved lipoprotein hrcj transmembrane [Sphingomonas sp.
           SKA58]
          Length = 246

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 5/166 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDNG---SSISVPSSMVGKARIHLAAQGLPSS 105
             +Y +L+    N +  AL +A+ID   S +     +++V      KA   L A+GLP  
Sbjct: 24  QEIYGQLKEGQANDMIAALRDAHIDAAKSADKDGQWAVAVSPDDFSKAIQLLRAKGLPRE 83

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
              +   LF+K      +   +    +  L  E++ T+  I G+V ARVH+ MP+     
Sbjct: 84  DFANLGSLFEKK-GLVSSPVEERARLIYGLSQELSHTVSEIDGVVQARVHLAMPEADPLS 142

Query: 166 KIGARPTASVMIRAINP-SVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
                 +A++ ++      +     AI+ LV  ++  L    V+V+
Sbjct: 143 DKIKPASAAIFVKYQPGYDLRSQTGAIKSLVTNSIEGLAYDKVSVV 188


>gi|325273533|ref|ZP_08139766.1| flagellar MS-ring protein [Pseudomonas sp. TJI-51]
 gi|324101334|gb|EGB98947.1| flagellar MS-ring protein [Pseudomonas sp. TJI-51]
          Length = 154

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 59/130 (45%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           + F ++   +   R + L   +   + +  A   +   P Y  LY  L   D  ++   L
Sbjct: 25  MAFLENIAQMPMLRQVGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLSGMDTKQVMDTL 84

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + A+I + +  N  ++ V S  + +AR+ LAA G+  S  N G+EL DK    G + FM+
Sbjct: 85  AAADIPYNVEPNSGALLVKSDDLARARLKLAAAGVAPSDGNVGFELLDKEQGLGTSQFME 144

Query: 128 EITRVRALEG 137
                R L G
Sbjct: 145 ATRYRRRLGG 154


>gi|166155649|ref|YP_001653904.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis L2b/UCH-1/proctitis]
 gi|165931637|emb|CAP07213.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis L2b/UCH-1/proctitis]
          Length = 325

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/195 (26%), Positives = 81/195 (41%), Gaps = 20/195 (10%)

Query: 34  MLFMAARFFVNSPHYDNLYV-KLEVSDVNRISVALSEANIDFRI-----SDNGSS----- 82
           + F+ A FF ++    ++    L   D N I V L    +  +      S  G S     
Sbjct: 10  LFFILALFFCSACDSRSMITHGLSGRDANEIVVLLVSKGVAAQKVPQAASSTGGSGEQLW 69

Query: 83  -ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
            ISVP++ + +A   L   GLP     S  +LF K      +   ++I     L  ++A 
Sbjct: 70  DISVPAAQITEALAILNQAGLPRMKGTSLLDLFSK-QGLVPSEMQEKIRYQEGLSEQMAT 128

Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEAIRHLVAAA 198
           TI+ + GIV A V I         +     TASV I+    ++         I+ LVA+A
Sbjct: 129 TIRKMDGIVDASVQISFSPE----EDQRPLTASVYIKHRGVLDNPNSIMVSKIKRLVASA 184

Query: 199 VPNLDMGDVTVLDST 213
           VP L   +V+V+   
Sbjct: 185 VPGLYPENVSVVSDR 199


>gi|255311377|ref|ZP_05353947.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis 6276]
 gi|255317678|ref|ZP_05358924.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis 6276s]
          Length = 326

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/195 (26%), Positives = 81/195 (41%), Gaps = 19/195 (9%)

Query: 34  MLFMAARFFVNSPHYDNLYV-KLEVSDVNRISVALSEANIDFRI-----SDNGSS----- 82
           + F+ A FF ++    ++    L   D N I V L    +  +      S  G S     
Sbjct: 10  LFFILALFFCSACDSRSMITHGLSGRDANEIVVLLVSKGVAAQKVPQAASSTGGSGEQLW 69

Query: 83  -ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
            ISVP++ + +A   L   GLP     S  +LF K      +   ++I     L  ++A 
Sbjct: 70  DISVPAAQITEALAILNQAGLPRMKGTSLLDLFAK-QGLVPSEMQEKIRYQEGLSEQMAT 128

Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEAIRHLVAAA 198
           TI+ + GIV A V I         +     TASV I+    ++         I+ LVA+A
Sbjct: 129 TIRKMDGIVDASVQISFSPEE---EDQRPLTASVYIKHRGVLDNPNSIMVSKIKRLVASA 185

Query: 199 VPNLDMGDVTVLDST 213
           VP L   +V+V+   
Sbjct: 186 VPGLCPENVSVVSDR 200


>gi|83647792|ref|YP_436227.1| type III secretory pathway, lipoprotein EscJ [Hahella chejuensis
           KCTC 2396]
 gi|83635835|gb|ABC31802.1| Type III secretory pathway, lipoprotein EscJ [Hahella chejuensis
           KCTC 2396]
          Length = 251

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 8/168 (4%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRIS------DNGSSISVPSSMVGKARIHLAAQGL 102
             LY  L   + N +   L     +  +       D    + +P   V +A   L  QG 
Sbjct: 23  TELYSGLSQQEGNEMYAILRSTGFNVEMEVLGAGKDQNVRLKLPEQQVARAISVLQRQGY 82

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162
           P     +  E+F K      +   ++   + A+  E++ T+ +I G++ ARVH+VM +  
Sbjct: 83  PKQHFATMGEIFAKD-GLISSPTEEKARFIYAISQELSHTLSNIDGVLVARVHVVMQEGD 141

Query: 163 SFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209
            F K     TASV I+ +  +  ++    I+ LV+ ++  LD   V+V
Sbjct: 142 KFDKNPKPSTASVFIKYVEDAPIETLTPKIKALVSNSILGLDYDQVSV 189


>gi|153003620|ref|YP_001377945.1| secretory protein YscJ/FliF family protein [Anaeromyxobacter sp.
           Fw109-5]
 gi|152027193|gb|ABS24961.1| secretory protein YscJ/FliF family protein [Anaeromyxobacter sp.
           Fw109-5]
          Length = 239

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 76/171 (44%), Gaps = 10/171 (5%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRI-----SDNGSSISVPSSMVGKARIHLAAQGLP 103
           + L   L+ +  N + VAL E  +         SD    ++V +    +A   LA + LP
Sbjct: 20  EELLHGLDEAQANEVLVALDEGGLPATKRREEGSDGQWMVAVGAHDAARAHRVLAERELP 79

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
            +      E+F K  S   T   +    + AL GE++R+++SI G+V ARVH+ +P    
Sbjct: 80  RARPPGFGEVFGK-GSMVPTPTEEHALYLHALAGELSRSVESIDGVVEARVHLGLPQPDP 138

Query: 164 FRKIGARPTASVMIRAINPSVYKSAEA----IRHLVAAAVPNLDMGDVTVL 210
            R          ++    P+   +  A    IR LVA A   L+ G ++V+
Sbjct: 139 LRPGDVPAPRGAVLVKCRPAACDAVRALEAGIRALVAGAAGGLEPGAISVV 189


>gi|304311662|ref|YP_003811260.1| Type III secretion pathway protein [gamma proteobacterium HdN1]
 gi|301797395|emb|CBL45615.1| Type III secretion pathway protein [gamma proteobacterium HdN1]
          Length = 244

 Score =  111 bits (277), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 42/182 (23%), Positives = 78/182 (42%), Gaps = 7/182 (3%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSM 89
           +  +     +++     LY +LE   VN +   L    I    ++S +G +  + VP + 
Sbjct: 8   VALVVCFLLLSACGGSELYSELEEHQVNEMQALLINVGIPAEKKLSSDGKAWRLLVPKAY 67

Query: 90  VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149
           + ++   L+  GLP  +  S  ++F K   F  +   +    V A+  E++ TI  + G+
Sbjct: 68  IPESMTLLSEHGLPRQTLPSIADVF-KKEGFVSSPVEEHARYVYAISQELSNTIMQLDGV 126

Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNL-DMGDV 207
            +ARVH  +P   +  K     + SV+I           E  I+ +    +  L D+  V
Sbjct: 127 ASARVHAALPARAALEKKQQSASVSVVIIEKPGFDLSKFETDIKAIATDGIEGLSDINRV 186

Query: 208 TV 209
           TV
Sbjct: 187 TV 188


>gi|283782092|ref|YP_003372847.1| Flagellar biosynthesis/type III secretory pathway lipoprotein-like
           protein [Pirellula staleyi DSM 6068]
 gi|283440545|gb|ADB18987.1| Flagellar biosynthesis/type III secretory pathway lipoprotein-like
           protein [Pirellula staleyi DSM 6068]
          Length = 553

 Score =  110 bits (276), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 87/576 (15%), Positives = 172/576 (29%), Gaps = 63/576 (10%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           QL +  +S +   R    +L  V++V I  ++      +   Y         +++  I  
Sbjct: 10  QLTELVRSMSPGTRLATGLLLIVVVVSIG-YLFQYQVTSGDEYLLDGRPFSGAELTNIES 68

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG-LPSSSSNSGYELFDKVNSFGLTS 124
           A ++A +  + + +G+ I +P          LA    LP+       E       F  + 
Sbjct: 69  AFAQAGLG-KSTVDGNRIRIPRGQKEIYLAALAENDALPADFYRYLDEAAASDTPFTSSR 127

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
            M+ + +  A + E+A  I  + G+ AA V       G   +   + TA V ++    ++
Sbjct: 128 SME-MKKWNAKQKELALIISRMKGVEAATVQYDEELKGGLTRSKQK-TAMVAVQTAGGAL 185

Query: 185 YK-SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS-----LSIVQAIQ 238
                ++IR+++A+A   LD  D+TV D T  L        +           +  Q  +
Sbjct: 186 EDAQLKSIRNVIASAYAGLDRRDITVTDMTSGLSYGGGSSTDGSMSEEDSIYAAHKQKYE 245

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV-YDPDSKVERSIRLSKDAQRS 297
            + +  I   LA           V  EL+ +     + +  D       S   +K+   +
Sbjct: 246 RDWQRKIADQLAMI---PGVIVGVNVELSPELSHQSQTIKLDAKPVAVESNEFTKEQSST 302

Query: 298 ETSQPESAVTVEQNMP--HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
             S       +   +    V+          + ++ + E  N     +            
Sbjct: 303 SPSPAGRPGAIPNGVGNQPVAVNNTSSANESQTSESRSEVRN-VPGHEQTVMKRAPLVPT 361

Query: 356 RLSIAVVVNKGRLT----EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
            ++ ++ +     T    E   + A         AEI KI +   G         T+ ++
Sbjct: 362 VVTASIDIPASYFTRIWRERNPQPAGAPPKQPDAAEIAKIETETKGKVQE-----TVRNL 416

Query: 412 --DFLE-------------NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456
                +               L  S   + S  +  +  F +    L  L   +    + 
Sbjct: 417 LPPVSQGTNPYPHIAVATYTDLPGSPMPEASIAETATAWFGSNWQTLAVLGVGMFALVML 476

Query: 457 LHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ 516
               R L             K   +         +             N           
Sbjct: 477 RSMTRPLPLPPAPANASSSLKIADTDADDDEEAASPASALRRRLAGGPNI---------- 526

Query: 517 SRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
                         L  M++ + +  A ILR W   
Sbjct: 527 -----------KDELRDMVKEDPDAAANILRNWIGD 551


>gi|294141012|ref|YP_003556990.1| type III secretion system apparatus lipoprotein [Shewanella
           violacea DSS12]
 gi|293327481|dbj|BAJ02212.1| type III secretion system apparatus lipoprotein [Shewanella
           violacea DSS12]
          Length = 243

 Score =  110 bits (276), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 78/195 (40%), Gaps = 6/195 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDF--RISDNGSSIS--VPSSMVGKARIHLAAQGLPS 104
            +L+  L   D N++   L   +ID    + D   +I+  +       A   L   G P 
Sbjct: 20  VDLFRDLSQDDANQMVALLMLHHIDAASELDDKSGTITLKIDKDQFINAVELLRQNGFPK 79

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
              +S  +LF        +   +E       E ++ RT+ ++ G+++ARV I   ++   
Sbjct: 80  PHYSSIEDLFPSGQ-LVTSPTQEEAKMNYLKEQQLERTLSTMDGVISARVTIAEMELDPN 138

Query: 165 RKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME 223
           R+     +ASV I+    +   +A+  I+ L+  +V  L + +++V              
Sbjct: 139 RREPTDKSASVFIKYSPQANLSNAKNNIKKLIQNSVTGLSVDNISVYLQESNYRYQPITP 198

Query: 224 RNILGKSLSIVQAIQ 238
                 +  ++ AI+
Sbjct: 199 STSHTGNSGLLSAIE 213


>gi|296162486|ref|ZP_06845277.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia sp. Ch1-1]
 gi|295887299|gb|EFG67126.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia sp. Ch1-1]
          Length = 281

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 6/165 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANID-FRIS--DNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           L+  L+    NRI  ALS   I+ ++    D   +I+V       A    +A  LP    
Sbjct: 21  LFEGLDEDQANRIVAALSHHGINGYKERNPDRTWNITVDDEDAVIATELASAYALPRGGH 80

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
            +  +LF +      +     +  V  L  E++ T++ + G++ ARVHIV+P+       
Sbjct: 81  ANLGDLFSR-QGLISSPEEDRVRYVYGLSQELSETLEKMDGVLLARVHIVLPEKDPMDPA 139

Query: 168 GAR-PTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210
               P+ASVM+R  +    +   + IR LVA  V  L    V++ 
Sbjct: 140 QDTLPSASVMMRYRSDYNLEPMRDRIRALVAGGVEGLTPARVSLT 184


>gi|282891204|ref|ZP_06299707.1| type III secretion lipoprotein SctJ [Parachlamydia acanthamoebae
           str. Hall's coccus]
 gi|281498897|gb|EFB41213.1| type III secretion lipoprotein SctJ [Parachlamydia acanthamoebae
           str. Hall's coccus]
          Length = 321

 Score =  110 bits (274), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 51/209 (24%), Positives = 79/209 (37%), Gaps = 19/209 (9%)

Query: 25  LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF------RISD 78
           + S ++  + L   A    +      +   L+  + N I V LS   ID         + 
Sbjct: 6   ILSKLVGTVFLLCMAFLLTSCESRKTIVNGLDEKEANEIVVFLSSKGIDAMKVQSTEGAG 65

Query: 79  NGSS------ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
            G S      ISV +    +A   L   GLP     S   +F  V     +   + I   
Sbjct: 66  GGGSKIVLWDISVSADKATQAMSILNQSGLPRRKPQSLLGIFSNV-GLVPSELQERIRYQ 124

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARP---TASVMIRAINPSVYKS-- 187
             L  +IA TI+ I G++ A V I  P+       G +     ASV ++        +  
Sbjct: 125 AGLAEQIASTIRKIDGVLDAEVQISFPEEDPLNPTGEKKGKIVASVYVKHSGVLDDPNSH 184

Query: 188 -AEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
               I+ LVAA+V  LD  +VTV+    +
Sbjct: 185 LVTKIKRLVAASVTGLDYDNVTVIGDRAR 213


>gi|91782699|ref|YP_557905.1| secretory protein YscJ/FliF [Burkholderia xenovorans LB400]
 gi|91686653|gb|ABE29853.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia xenovorans LB400]
          Length = 281

 Score =  110 bits (274), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 6/165 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANID-FRIS--DNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           L+  L+    NRI  ALS   I+ ++    D   +I+V  +    A    +A  LP    
Sbjct: 21  LFEGLDEDQANRIVAALSHHGINGYKERNPDRTWNITVDDADAVVATELASAYALPRGGH 80

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
            +  +LF +      +     +  V  L  E++ T++ + G++ ARVHIV+P+       
Sbjct: 81  ANLGDLFSR-QGLISSPEEDRVRYVYGLSQELSETLEKMDGVLLARVHIVLPEKDPMDST 139

Query: 168 GAR-PTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210
               P+ASVM+R  +    +   + IR LVA  V  L    V++ 
Sbjct: 140 QDTLPSASVMMRYRSDYNLEPMRDRIRALVAGGVEGLTPARVSLT 184


>gi|212702675|ref|ZP_03310803.1| hypothetical protein DESPIG_00703 [Desulfovibrio piger ATCC 29098]
 gi|212673947|gb|EEB34430.1| hypothetical protein DESPIG_00703 [Desulfovibrio piger ATCC 29098]
          Length = 260

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/166 (26%), Positives = 71/166 (42%), Gaps = 5/166 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGLPSS 105
             +Y  L     N++   L    I+        NG ++ V    + +A   L    LP  
Sbjct: 17  VEMYSGLSEDQANQMLSTLLRRGIEAEKQAAGKNGYTLLVDDDQLVRALQVLKENSLPRE 76

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
           +  +  E+F        TS   +     AL  E+A T+  I G++ ARVH+V+       
Sbjct: 77  AFKNLGEVFAGDGMISSTS-EVQARMSYALSQELADTLSRIDGVLTARVHVVLGVNDKVN 135

Query: 166 KIGARPTASVMIR-AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
            I   P+A+V +R  ++  V      IR LVA AV +L   +V+V+
Sbjct: 136 NITIAPSAAVFLRHTLDSPVVNLVPEIRELVAGAVASLKYDNVSVM 181


>gi|227114184|ref|ZP_03827840.1| type III secretion protein [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 255

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 4/156 (2%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108
           L   L  +D N     L    I    R+   G ++ + +  + +A   L A GLP  S  
Sbjct: 24  LNRGLSENDANEAISMLGRYQIGAEKRVDKTGVTLVIDAKNMERAVNILNAAGLPKQSRT 83

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           +  E+F K +    T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +  
Sbjct: 84  NLGEVFQK-SGVISTPLEERARYIYALSQEVEATLAQIDGVLVARVHVVLPERIAPGEPV 142

Query: 169 ARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLD 203
              +A+V I+          E  IR +VA+++P L 
Sbjct: 143 QPASAAVFIKYRAELEPDGMEQRIRRMVASSIPGLS 178


>gi|325526929|gb|EGD04393.1| flagellar MS-ring protein [Burkholderia sp. TJI49]
          Length = 185

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 65/199 (32%), Gaps = 15/199 (7%)

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           +RLS+AVVVN   + +  G    Q    + LA+I ++V  A G + +RGD++ + +  F 
Sbjct: 1   KRLSVAVVVNSQPVADAKGHVTMQPLPPAKLAQIEQLVKDAMGYDEKRGDSVNVVNSAFS 60

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
                N+        DI+           +      L       A+RR     +     +
Sbjct: 61  TVPDPNADLPWWRQPDIVEMAKEAAKWLGIAAAAAALYFMFVRPAMRRAFPPPEPAAPAL 120

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
                        A        D+  L     +   + RNL                  +
Sbjct: 121 AAPEDPVALDGLPAPEQAEA--DDPMLLGFENEKHRYERNLDYA-------------RTI 165

Query: 535 IEINEERFAKILRKWARSE 553
              + +  A +++ W   E
Sbjct: 166 ARQDPKIVATVVKNWVSDE 184


>gi|227328506|ref|ZP_03832530.1| type III secretion protein [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 255

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 4/156 (2%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108
           L   L  +D N     L    I    R+   G ++ + +  + +A   L A GLP  S  
Sbjct: 24  LNRGLSENDANEAISMLGRYQIGAEKRVDKTGVTLVIDAKNMERAVNILNAAGLPKQSRT 83

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           +  E+F K +    T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +  
Sbjct: 84  NLGEVFQK-SGVISTPLEERARYIYALSQEVEATLAQIDGVLVARVHVVLPERIAPGEPV 142

Query: 169 ARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLD 203
              +A+V I+          E  IR +VA+++P L 
Sbjct: 143 QPASAAVFIKYRAELEPDGMEQRIRRMVASSIPGLS 178


>gi|253688582|ref|YP_003017772.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251755160|gb|ACT13236.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 255

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 72/173 (41%), Gaps = 4/173 (2%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVG 91
           +  +             L   L  +D N     L    I    R+   G ++ + +  + 
Sbjct: 7   VFLLLIGLLAGCGEPIELNRGLSENDANEAISMLGRYQIGAEKRVDKTGVTLVIDAKNME 66

Query: 92  KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVA 151
           +A   L A GLP  S  +  E+F K +    T   +    + AL  E+  T+  I G++ 
Sbjct: 67  RAVNILNAAGLPKQSRTNLGEVFQK-SGVISTPLEERARYIYALSQEVEATLAQIDGVLV 125

Query: 152 ARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLD 203
           ARVH+V+P+  +  +     +A+V I+          E  IR +VA+++P L 
Sbjct: 126 ARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGMEPRIRRMVASSIPGLS 178


>gi|194350719|gb|ACF53790.1| HrcJ [Pantoea stewartii]
          Length = 146

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 4/147 (2%)

Query: 59  DVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
           D N ++  L   +I      + +G ++ V ++ + +A   L A GLP  +  +  E+F K
Sbjct: 1   DANEVAAELGRYHIKAEKHTNKDGITVMVDTADLNRAVHILDAAGLPRPTRTNLGEVFQK 60

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
            N    T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +     +A+V 
Sbjct: 61  -NGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERVAPGEPILPASAAVF 119

Query: 177 IRAINPSVYKSAE-AIRHLVAAAVPNL 202
           I+          E  IR +VA+++P L
Sbjct: 120 IKYRPELDPDVIEPRIRQMVASSLPGL 146


>gi|194350697|gb|ACF53779.1| HrcJ [Erwinia psidii]
          Length = 146

 Score =  107 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 4/147 (2%)

Query: 59  DVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
           D N ++  L   +I    R S +G ++ V ++ + +A   L A GLP  +  +  E+F K
Sbjct: 1   DANEVAAELGRYHIQADKRTSKDGITVLVDAAELNRAVHILDAAGLPRPARTNLGEVFQK 60

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
            N    T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +     +A+V 
Sbjct: 61  -NGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAPGEPVQPASAAVF 119

Query: 177 IRAINPSVYKSAE-AIRHLVAAAVPNL 202
           I+          E  IR +VA+++P L
Sbjct: 120 IKYRPDLDPDVIEPRIRQMVASSLPGL 146


>gi|54124981|gb|AAV30249.1| YscJ [Aeromonas hydrophila]
          Length = 245

 Score =  107 bits (266), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 75/195 (38%), Gaps = 15/195 (7%)

Query: 21  RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80
           +  +L  V+   ++L               LY  +   + N +   L    I      + 
Sbjct: 2   KRSMLMGVVFTSLLLGGCK---------VELYTGVSQKEGNEMLALLRTEGISSDKQPDK 52

Query: 81  SS---ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137
                + V  S V +A   L  +G P  S ++  ++F K      +   +      A   
Sbjct: 53  DGHVKLLVEESDVAQAIEALKRKGYPRESFSTLQDVFPKD-GLISSPTEERARLNYAKAQ 111

Query: 138 EIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLV 195
           EI+ T+  I G++ ARVH+V+P+      K  +  +ASV I+        +    I+ LV
Sbjct: 112 EISHTLSEIDGVLVARVHVVLPEGNEGISKKPSPASASVFIKHAADIQLDTYIPQIKQLV 171

Query: 196 AAAVPNLDMGDVTVL 210
             ++  L    ++V+
Sbjct: 172 NNSIEGLAYDRISVV 186


>gi|83645997|ref|YP_434432.1| type III secretory pathway, lipoprotein EscJ [Hahella chejuensis
           KCTC 2396]
 gi|83634040|gb|ABC30007.1| Type III secretory pathway, lipoprotein EscJ [Hahella chejuensis
           KCTC 2396]
          Length = 265

 Score =  107 bits (266), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 75/181 (41%), Gaps = 6/181 (3%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN----GSSISVPSSM 89
           +L      F+ S   + LY  L   +   +   L E  ++            ++SV  + 
Sbjct: 16  LLLGFLFVFILSGCKETLYSDLTEKEGAEMLSILLEEGLEAEKVPGQKGQTVALSVERAQ 75

Query: 90  VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149
           + +A   L ++G P     S  ELF K      +   +    +  L  EIA T+  + G+
Sbjct: 76  LSQAIRLLKSRGYPRDDFTSVGELFKKD-GLISSPLEERARYIYGLSQEIAATLSQLDGV 134

Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVT 208
           + ARVH+VMP++ + +      +ASV I+  +          I+ LV  ++  L   ++ 
Sbjct: 135 ITARVHVVMPEVENKKAPLKVSSASVFIKYESTVNLDDFVPQIKLLVNNSIEGLSYDNIA 194

Query: 209 V 209
           V
Sbjct: 195 V 195


>gi|1781392|gb|AAC44781.1| PscJ [Pseudomonas aeruginosa]
          Length = 248

 Score =  107 bits (266), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 69/167 (41%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDF--RISDNGSS-ISVPSSMVGKARIHLAAQGLPSS 105
             LY  +   + N +   L    +    +   +G+  + V  S + +A   L  +G P  
Sbjct: 25  VELYTGISQKEGNEMLALLRSEGVSADKQADKDGTVRLLVEESDIAEAVEVLKRKGYPRE 84

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMGSF 164
           + ++  ++F K      +   +      A   EI+ T+  I G++ ARVH+V+P +    
Sbjct: 85  NFSTLKDVFPKD-GLISSPIEERARLNYAKAQEISHTLSEIDGVLVARVHVVLPEERDGL 143

Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
            +  +  +ASV I+        +    I+ LV   +  L    ++V+
Sbjct: 144 GRKSSPASASVFIKHAADVQLDAYVPQIKQLVNNGIEGLSYDRISVV 190


>gi|37527647|ref|NP_930991.1| Type III secretion component protein SctJ [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36787082|emb|CAE16157.1| Type III secretion component protein SctJ [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 245

 Score =  106 bits (265), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 6/165 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANI--DFRISDNGSS-ISVPSSMVGKARIHLAAQGLPSSSS 107
           LY  +   + N +   L EA I  D +   +G+  + V  S V +A   L  +G P  + 
Sbjct: 23  LYTDVSQKEGNEMLALLREAGISSDKQPDKDGNIKLLVEESDVAQAVEVLKRKGYPRENF 82

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS-FRK 166
           +S  ++F K      +   +      A   EIART+  I G++ ARVH+V+P+      K
Sbjct: 83  SSLQDVFPKD-GLISSPIEERARLNFAKAQEIARTLSEIDGVLVARVHVVLPEEQDRLGK 141

Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
             +  ++SV I+        +    I+ LV  ++  L    ++V+
Sbjct: 142 KLSPASSSVFIKHAADVQLDTYIPQIKQLVNNSIEGLSYDRISVV 186


>gi|27550044|gb|AAO18027.1| LscJ [Photorhabdus luminescens]
          Length = 245

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 6/165 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANI--DFRISDNGSS-ISVPSSMVGKARIHLAAQGLPSSSS 107
           LY  +   + N +   L EA I  D +   +G+  + V  S V +A   L  +G P  + 
Sbjct: 23  LYTGVSQKEGNEMLALLREAGISSDKQPDKDGNIKLLVEESDVAQAVEVLKRKGYPRENF 82

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS-FRK 166
           +S  ++F K      +   +      A   EIART+  I G++ ARVH+V+P+      K
Sbjct: 83  SSLQDVFPKD-GLISSPIEERARLNFAKAQEIARTLSEIDGVLVARVHVVLPEEQDKLGK 141

Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
             +  ++SV I+        +    I+ LV  ++  L    ++V+
Sbjct: 142 KLSPASSSVFIKHAADVQLDTYIPQIKQLVNNSIEGLSYDRISVV 186


>gi|50121023|ref|YP_050190.1| type III secretion system protein [Pectobacterium atrosepticum
           SCRI1043]
 gi|42560409|gb|AAS20369.1| HrcJ [Pectobacterium atrosepticum]
 gi|49611549|emb|CAG74997.1| type III secretion protein [Pectobacterium atrosepticum SCRI1043]
          Length = 255

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 4/156 (2%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108
           L   L  +D N     L    I    R+   G ++ + +  + +A   L A GLP  S  
Sbjct: 24  LNRGLSENDANEAISMLGRYQIGAEKRVEKTGVTLVIDAKNMERAVNILNAAGLPKQSRT 83

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           +  E+F K +    T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +  
Sbjct: 84  NLGEVFQK-SGVISTPLEERARYIYALSQEVEATLAQIDGVMVARVHVVLPERIAPGEPV 142

Query: 169 ARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLD 203
              +A+V I+          E  IR +VA+++P L 
Sbjct: 143 QPASAAVFIKYRAELEPDGMEPRIRRMVASSIPGLS 178


>gi|76574834|gb|ABA47308.1| HrcJ [Pseudomonas cichorii]
          Length = 263

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/155 (28%), Positives = 76/155 (49%), Gaps = 4/155 (2%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108
           L+  L   D N +   L+  NID   R+   G ++ V +  + +A   L A GLP  S +
Sbjct: 27  LHRDLTEQDANEVLAELAGKNIDAQKRLDKGGVAVLVSTQDISRAVRVLEAVGLPRRSRS 86

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           +  E+F K      +   +    + AL  E+ +T+  I G+V ARVH+V+P+  +  +  
Sbjct: 87  TLGEVFRKEGVI-SSPMEERARYIYALSQELEQTLSQIDGVVVARVHVVLPERIAPGEPV 145

Query: 169 ARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNL 202
              +A+V I+  N     S    IR +VA+++P +
Sbjct: 146 QPASAAVFIKYRNDLEPDSILPRIRRMVASSIPGM 180


>gi|253988512|ref|YP_003039868.1| type III secretion component protein sctj [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211637906|emb|CAR66535.1| type iii secretion component protein sctj [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253779962|emb|CAQ83123.1| type iii secretion component protein sctj [Photorhabdus
           asymbiotica]
          Length = 245

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 82/188 (43%), Gaps = 12/188 (6%)

Query: 28  VILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI--DFRISDNGSS-IS 84
           +I V + + M A   +       LY  +   + N +   L EA I  D +   +G+  + 
Sbjct: 6   IICVLLAVLMLAGCKI------ELYTGVSQKEGNEMLALLREAGISSDKQPDKDGNIKLL 59

Query: 85  VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144
           V  S V +A   L ++G P  + +S  ++F K      +   +      A   EIART+ 
Sbjct: 60  VEESDVAQAVEVLKSKGYPRENFSSLQDVFPKD-GLISSPVEERARLNFAKAQEIARTLS 118

Query: 145 SISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNL 202
            I G++ ARVH+V+P+      K     ++SV I+        +    I+ LV  ++  L
Sbjct: 119 EIDGVLVARVHVVLPEEQDRLGKKLLPASSSVFIKHAADVQLDTYIPQIKQLVNNSIEGL 178

Query: 203 DMGDVTVL 210
               ++V+
Sbjct: 179 SYDRISVV 186


>gi|313110409|ref|ZP_07796295.1| pscJ type III export protein [Pseudomonas aeruginosa 39016]
 gi|310882797|gb|EFQ41391.1| pscJ type III export protein [Pseudomonas aeruginosa 39016]
          Length = 244

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 69/167 (41%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDF--RISDNGSS-ISVPSSMVGKARIHLAAQGLPSS 105
             LY  +   + N +   L    +    +   +G+  + V  S + +A   L  +G P  
Sbjct: 21  VELYTGISQKEGNEMLALLRSEGVSADKQADKDGTVRLLVEESDIAEAVEVLKRKGYPRE 80

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMGSF 164
           + ++  ++F K      +   +      A   EI+ T+  I G++ ARVH+V+P +    
Sbjct: 81  NFSTLKDVFPKD-GLISSPIEERARLNYAKAQEISHTLSEIDGVLVARVHVVLPEERDGL 139

Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
            +  +  +ASV I+        +    I+ LV   +  L    ++V+
Sbjct: 140 GRKSSPASASVFIKHAADVQLDAYVPQIKQLVNNGIEGLSYDRISVV 186


>gi|194350699|gb|ACF53780.1| HrcJ [Erwinia pyrifoliae]
          Length = 146

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 4/147 (2%)

Query: 59  DVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
           D N ++  L   +I      + +G ++ V ++ + +A   L A GLP  +  +  E+F K
Sbjct: 1   DANEVAAELGRYHIQAEKLANKDGITVMVDAAELNRAVHILDAAGLPRPARTNLGEVFQK 60

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
            N    T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +     +A+V 
Sbjct: 61  -NGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAPGEPVQPASAAVF 119

Query: 177 IRAINPSVYKSAE-AIRHLVAAAVPNL 202
           I+          E  IR +VA+++P L
Sbjct: 120 IKYRPDLDPDIIEPRIRRMVASSLPGL 146


>gi|167030900|gb|ABZ05768.1| HrcJ [Pectobacterium carotovorum subsp. carotovorum]
          Length = 212

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 4/156 (2%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108
           L   L  +D N     L    I    R+   G ++ + +  + +A   L A GLP  S  
Sbjct: 24  LNRGLSENDANEAISMLGRYQIGAEKRMDKTGVTLVIDAKNMERAVNILNAAGLPKQSRT 83

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           +  E+F K +    T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +  
Sbjct: 84  NLGEVFQK-SGVISTPLEERARYIYALSQEVEATLAQIDGVLVARVHVVLPERIAPGEPV 142

Query: 169 ARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLD 203
              +A+V I+          E  IR +VA+++P L 
Sbjct: 143 QPASAAVFIKYRAELEPDGMEQRIRRMVASSIPGLS 178


>gi|107101154|ref|ZP_01365072.1| hypothetical protein PaerPA_01002186 [Pseudomonas aeruginosa PACS2]
 gi|296389892|ref|ZP_06879367.1| type III export protein PscJ [Pseudomonas aeruginosa PAb1]
          Length = 238

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 69/167 (41%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDF--RISDNGSS-ISVPSSMVGKARIHLAAQGLPSS 105
             LY  +   + N +   L    +    +   +G+  + V  S + +A   L  +G P  
Sbjct: 15  VELYTGISQKEGNEMLALLRSEGVSADKQADKDGTVRLLVEESDIAEAVEVLKRKGYPRE 74

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMGSF 164
           + ++  ++F K      +   +      A   EI+ T+  I G++ ARVH+V+P +    
Sbjct: 75  NFSTLKDVFPKD-GLISSPIEERARLNYAKAQEISHTLSEIDGVLVARVHVVLPEERDGL 133

Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
            +  +  +ASV I+        +    I+ LV   +  L    ++V+
Sbjct: 134 GRKSSPASASVFIKHAADVQLDAYVPQIKQLVNNGIEGLSYDRISVV 180


>gi|84785890|gb|ABC62084.1| secretion and cellular translocation protein J [Chlamydophila
           psittaci]
          Length = 330

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 75/196 (38%), Gaps = 21/196 (10%)

Query: 35  LFMAARFF--VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI------SDNGSS---- 82
           LF     F   +      +   L   + N I V L    +  +       S  G+S    
Sbjct: 10  LFFIMTLFCCTSCNSRSLIVHGLPGREANEIVVLLVSKGVAAQKQPQAAASTGGASSXQL 69

Query: 83  --ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140
             ISVP+  + +A   L   GLP     S  +LF K      +   ++I     L  ++A
Sbjct: 70  WDISVPAEQITEALAILNQAGLPRMKGTSLLDLFAK-QGLVPSEMQEKIRYQEGLSEQMA 128

Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS---AEAIRHLVAA 197
            TI+ + GIV A V I         +     TASV I+        +      I+ LVA+
Sbjct: 129 STIRKMDGIVDASVQISFTTE---AEDNLPLTASVYIKHRGVLDNPNSIMVSKIKRLVAS 185

Query: 198 AVPNLDMGDVTVLDST 213
           AVP L   +V+V+   
Sbjct: 186 AVPGLSTENVSVISDR 201


>gi|15596920|ref|NP_250414.1| type III export protein PscJ [Pseudomonas aeruginosa PAO1]
 gi|116049673|ref|YP_791522.1| pscJ type III export protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|254240067|ref|ZP_04933389.1| type III export protein PscJ [Pseudomonas aeruginosa 2192]
 gi|9947698|gb|AAG05112.1|AE004598_11 type III export protein PscJ [Pseudomonas aeruginosa PAO1]
 gi|115584894|gb|ABJ10909.1| pscJ type III export protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126193445|gb|EAZ57508.1| type III export protein PscJ [Pseudomonas aeruginosa 2192]
          Length = 248

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 69/167 (41%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDF--RISDNGSS-ISVPSSMVGKARIHLAAQGLPSS 105
             LY  +   + N +   L    +    +   +G+  + V  S + +A   L  +G P  
Sbjct: 25  VELYTGISQKEGNEMLALLRSEGVSADKQADKDGTVRLLVEESDIAEAVEVLKRKGYPRE 84

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMGSF 164
           + ++  ++F K      +   +      A   EI+ T+  I G++ ARVH+V+P +    
Sbjct: 85  NFSTLKDVFPKD-GLISSPIEERARLNYAKAQEISHTLSEIDGVLVARVHVVLPEERDGL 143

Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
            +  +  +ASV I+        +    I+ LV   +  L    ++V+
Sbjct: 144 GRKSSPASASVFIKHAADVQLDAYVPQIKQLVNNGIEGLSYDRISVV 190


>gi|46445839|ref|YP_007204.1| putative type III secretion protein SctJ [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399480|emb|CAF22929.1| putative type III secretion protein SctJ [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 337

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/200 (24%), Positives = 74/200 (37%), Gaps = 17/200 (8%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR----ISDNGSS------ 82
            +L        +      +   LE  + N I V LS   I+      +S+ G        
Sbjct: 20  FLLITLMGLVTSCESRRVIVNGLEEKEANEILVFLSNKGINANKVQAVSEGGGGAKGVLW 79

Query: 83  -ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
            ISV      +A   L   GLP     +   +F    S   +   ++I     L  +IA 
Sbjct: 80  NISVEEGQANEAMALLNQVGLPRRRGQNLLGIF-ANTSLVPSGMQEKIRYQAGLAEQIAS 138

Query: 142 TIQSISGIVAARVHIVMPDMGSFRKI--GARPTASVMIRAINPSVYKSAE---AIRHLVA 196
           TI+ I G++ A V I  PD           + TASV ++        +A     I+ LVA
Sbjct: 139 TIRKIDGVLDADVQISFPDEDPLNPNAPKQKITASVYVKHNGVLDDPNAHLITRIKRLVA 198

Query: 197 AAVPNLDMGDVTVLDSTGKL 216
            ++  LD   VTV+    + 
Sbjct: 199 GSINGLDYDYVTVIGDKARY 218


>gi|34500890|gb|AAQ73918.1| HrcJ [Pectobacterium carotovorum subsp. carotovorum]
          Length = 255

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 72/173 (41%), Gaps = 4/173 (2%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVG 91
           +  +             L   L  +D N     L    I    R+   G ++ + +  + 
Sbjct: 7   VFLLLIGLVAGCGEPIELNRGLSENDANEAISMLGRYQIGAEKRMDKTGVTLVIDAKNME 66

Query: 92  KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVA 151
           +A   L A GLP  S  +  E+F K +    T   +    + AL  E+  T+  I G++ 
Sbjct: 67  RAVNILNAAGLPKQSRTNLGEVFQK-SGVISTPLKERARYIYALSQEVEATLAQIDGVLV 125

Query: 152 ARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLD 203
           ARVH+V+P+  +  +     +A+V I+          E  IR +VA+++P L 
Sbjct: 126 ARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGMEQRIRRMVASSIPGLS 178


>gi|218892324|ref|YP_002441191.1| type III export protein PscJ [Pseudomonas aeruginosa LESB58]
 gi|254234822|ref|ZP_04928145.1| type III export protein PscJ [Pseudomonas aeruginosa C3719]
 gi|126166753|gb|EAZ52264.1| type III export protein PscJ [Pseudomonas aeruginosa C3719]
 gi|218772550|emb|CAW28333.1| type III export protein PscJ [Pseudomonas aeruginosa LESB58]
          Length = 248

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 69/167 (41%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDF--RISDNGSS-ISVPSSMVGKARIHLAAQGLPSS 105
             LY  +   + N +   L    +    +   +G+  + V  S + +A   L  +G P  
Sbjct: 25  VELYTGISQKEGNEMLALLRSEGVSADKQADKDGTVRLLVEESDIAEAVEVLKRKGYPRE 84

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMGSF 164
           + ++  ++F K      +   +      A   EI+ T+  I G++ ARVH+V+P +    
Sbjct: 85  NFSTLKDVFPKD-GLISSPIEERARLNYAKAQEISHTLSEIDGVLVARVHVVLPEERDGL 143

Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
            +  +  +ASV I+        +    I+ LV   +  L    ++V+
Sbjct: 144 GRKSSPASASVFIKHAADVQLDAYVPQIKQLVNNGIEGLSYDRISVV 190


>gi|15835462|ref|NP_297221.1| type III secretion protein SctJ [Chlamydia muridarum Nigg]
 gi|270285642|ref|ZP_06195036.1| type III secretion protein SctJ [Chlamydia muridarum Nigg]
 gi|270289651|ref|ZP_06195953.1| type III secretion protein SctJ [Chlamydia muridarum Weiss]
 gi|301337038|ref|ZP_07225240.1| type III secretion protein SctJ [Chlamydia muridarum MopnTet14]
 gi|7190875|gb|AAF39646.1| type III secretion protein SctJ [Chlamydia muridarum Nigg]
          Length = 328

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 68/175 (38%), Gaps = 20/175 (11%)

Query: 54  KLEVSDVNRISVALSEANIDFRISDNG------------SSISVPSSMVGKARIHLAAQG 101
            L   + N I V L    +  +                   ISVP++ + +A   L   G
Sbjct: 31  GLTGREANEIVVLLVSKGVSAQKVPQVAGSSGGGSSEQLWDISVPAAQITEALAILNQAG 90

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP     S  +LF K      +   ++I     L  ++A TI+ + GIV A V I     
Sbjct: 91  LPRMKGTSLLDLFAK-QGLVPSEMQEKIRYQEGLSEQMATTIRKMDGIVDASVQISFSPE 149

Query: 162 GSFRKIGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDST 213
               +     TASV I+    ++         I+ LVA+AVP L   +V+V+   
Sbjct: 150 ----EDQLPLTASVYIKHRGVLDNPNSIMVSKIKRLVASAVPGLCPENVSVVSDR 200


>gi|329943273|ref|ZP_08292047.1| hypothetical protein G5Q_0963 [Chlamydophila psittaci Cal10]
 gi|332287851|ref|YP_004422752.1| putative type III secretion system protein [Chlamydophila psittaci
           6BC]
 gi|313848423|emb|CBY17427.1| putative type III export protein [Chlamydophila psittaci RD1]
 gi|325506893|gb|ADZ18531.1| putative type III secretion system protein [Chlamydophila psittaci
           6BC]
 gi|328814820|gb|EGF84810.1| hypothetical protein G5Q_0963 [Chlamydophila psittaci Cal10]
 gi|328915113|gb|AEB55946.1| type III secretion protein SctJ [Chlamydophila psittaci 6BC]
          Length = 330

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 76/196 (38%), Gaps = 21/196 (10%)

Query: 35  LFMAARFF--VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI------SDNGSS---- 82
           LF     F   +      +   L   + N I V L    +  +       S  G+S    
Sbjct: 10  LFFIMTLFCCTSCNSRSLIVHGLPGREANEIVVLLVSKGVAAQKQPQAAASTGGASSEQL 69

Query: 83  --ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140
             ISVP+  + +A   L   GLP     S  +LF K      +   ++I     L  ++A
Sbjct: 70  WDISVPAEQITEALAILNQAGLPRMKGTSLLDLFAK-QGLVPSEMQEKIRYQEGLSEQMA 128

Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSVYKSAEAIRHLVAA 197
            TI+ + GIV A V I         +     TASV I+    ++         I+ LVA+
Sbjct: 129 STIRKMDGIVDASVQISFTTE---AEDNLPLTASVYIKHRGVLDNPNSIMVSKIKRLVAS 185

Query: 198 AVPNLDMGDVTVLDST 213
           AVP L   +V+V+   
Sbjct: 186 AVPGLSTENVSVISDR 201


>gi|269302618|gb|ACZ32718.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Chlamydophila pneumoniae LPCoLN]
          Length = 335

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 67/175 (38%), Gaps = 19/175 (10%)

Query: 54  KLEVSDVNRISVALSEANIDFRISDNG------------SSISVPSSMVGKARIHLAAQG 101
            L   D N I V L    +  +                   I+VPS+ + +A   L   G
Sbjct: 31  GLPGRDANEIVVLLVSKGVAAQKLPQAAAATAGAATEQMWDIAVPSAQITEALAILNQAG 90

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP     S  +LF K      +   ++I     L  ++A TI+ + GIV A V I     
Sbjct: 91  LPRMKGTSLLDLFAK-QGLVPSELQEKIRYQEGLSEQMASTIRKMDGIVDASVQISFTTE 149

Query: 162 GSFRKIGARPTASVMIRAINPSVYKS---AEAIRHLVAAAVPNLDMGDVTVLDST 213
               +     TASV I+        +      I+ L+A+AVP L   +V+V+   
Sbjct: 150 N---EDNLPLTASVYIKHRGVLDNPNSIMVSKIKRLIASAVPGLVPENVSVVSDR 201


>gi|145301433|ref|YP_001144272.1| AscJ protein [Aeromonas salmonicida subsp. salmonicida A449]
 gi|66947987|emb|CAE83124.1| AscJ protein [Aeromonas salmonicida subsp. salmonicida]
 gi|142856315|gb|ABO92524.1| AscJ protein [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 242

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 67/167 (40%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGLPSS 105
             LY  +   + N +   L    I      +      + V  S V +A   L  +G P  
Sbjct: 17  VELYTGVTQKEGNEMLALLQTEGIASDKQPDKDGRIKLLVEESDVAQAIETLKRKGYPKE 76

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD-MGSF 164
           S ++  ++F K      +   +      A   EI+ T+  I G++ ARVH+V+P+     
Sbjct: 77  SFSTLQDVFPKD-GLISSPTEERARLTYAKAQEISNTLSEIDGVLVARVHVVLPEGNEGI 135

Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
            K  +  +ASV I+        +    I+ LV  ++  L    ++V+
Sbjct: 136 SKKPSPASASVFIKHAADIQLDTYIPQIKQLVNNSIEGLAYDRISVV 182


>gi|145284368|gb|ABP51949.1| AscJ [Aeromonas veronii bv. sobria]
          Length = 246

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 67/167 (40%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGLPSS 105
             LY  +   + N +   L    I      +      + V  S V +A   L  +G P  
Sbjct: 21  VELYTGVTQKEGNEMLALLQTEGIASDKQPDKDGRIKLLVEESDVAQAIETLKRKGYPKE 80

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD-MGSF 164
           S ++  ++F K      +   +      A   EI+ T+  I G++ ARVH+V+P+     
Sbjct: 81  SFSTLQDVFPKD-GLISSPTEERARLTYAKAQEISNTLSEIDGVLVARVHVVLPEGNEGI 139

Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
            K  +  +ASV I+        +    I+ LV  ++  L    ++V+
Sbjct: 140 SKKPSPASASVFIKHAADIQLDTYIPQIKQLVNNSIEGLAYDRISVV 186


>gi|118592619|ref|ZP_01550009.1| Type III secretion component protein SctJ [Stappia aggregata IAM
           12614]
 gi|118434670|gb|EAV41321.1| Type III secretion component protein SctJ [Stappia aggregata IAM
           12614]
          Length = 239

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 71/160 (44%), Gaps = 5/160 (3%)

Query: 55  LEVSDVNRISVALSEANIDFRIS---DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGY 111
           +   D N +   L    I        D+G S+ V  + +  A   L+  G P +   S  
Sbjct: 1   MSEQDANGMLSVLMANGISVEKRYDGDDGVSLLVDEADLAPAIGILSENGFPRTERESIG 60

Query: 112 ELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARP 171
            +F K +    + F + +  + AL  E++ T+  I G++ ARVH+V+P+     ++    
Sbjct: 61  SVFQK-SGIMSSPFEERVRYIHALGEEVSGTLNEIDGVLMARVHVVLPEKPELGEVIVPS 119

Query: 172 TASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210
           +A+V I+             IR LV+ ++  ++   VTV+
Sbjct: 120 SAAVFIKHSKNVDLDFITPQIRRLVSNSIQGVEYDSVTVV 159


>gi|182441001|dbj|BAG24126.1| HrcJ [Pseudomonas cichorii]
          Length = 263

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 4/155 (2%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108
           L+  L   D N +   L+  NID   R+   G ++ V +  + +A   L A GLP  S +
Sbjct: 27  LHRDLTEQDANEVLAELAGKNIDAQKRLDKGGVAVLVSTQDISRAVKVLEAVGLPRRSRS 86

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           +  E+F K      +   +    + AL  E+ +T+  I G+V ARVH+V+P+  +  +  
Sbjct: 87  TLGEVFRKEGVI-SSPMEERARYIYALSQELEQTLSQIDGVVVARVHVVLPERIAPGEPV 145

Query: 169 ARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNL 202
              +A+V I+        S    IR +VA+++P +
Sbjct: 146 QPASAAVFIKYRPDLEPDSVLPRIRRMVASSIPGM 180


>gi|15618737|ref|NP_225023.1| Yop proteins translocation lipoprotein J [Chlamydophila pneumoniae
           CWL029]
 gi|15836361|ref|NP_300885.1| Yop translocation J [Chlamydophila pneumoniae J138]
 gi|16752212|ref|NP_445580.1| type III secretion protein SctJ [Chlamydophila pneumoniae AR39]
 gi|33242188|ref|NP_877129.1| secretion protein [Chlamydophila pneumoniae TW-183]
 gi|4377140|gb|AAD18965.1| Yop proteins translocation lipoprotein J [Chlamydophila pneumoniae
           CWL029]
 gi|6672018|dbj|BAA88646.1| Yop translocation J [Chlamydophila pneumoniae]
 gi|7189957|gb|AAF38818.1| type III secretion protein SctJ [Chlamydophila pneumoniae AR39]
 gi|8979202|dbj|BAA99036.1| Yop translocation J [Chlamydophila pneumoniae J138]
 gi|33236699|gb|AAP98786.1| secretion protein [Chlamydophila pneumoniae TW-183]
          Length = 335

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 72/200 (36%), Gaps = 21/200 (10%)

Query: 31  VPIMLFMAARFF--VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG-------- 80
           +   LF         +      +   L   + N I V L    +  +             
Sbjct: 6   ISFCLFFLMTLLCCTSCNSRSLIVHGLPGREANEIVVLLVSKGVAAQKLPQAAAATAGAA 65

Query: 81  ----SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136
                 I+VPS+ + +A   L   GLP     S  +LF K      +   ++I     L 
Sbjct: 66  TEQMWDIAVPSAQITEALAILNQAGLPRMKGTSLLDLFAK-QGLVPSELQEKIRYQEGLS 124

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS---AEAIRH 193
            ++A TI+ + G+V A V I         +     TASV I+        +      I+ 
Sbjct: 125 EQMASTIRKMDGVVDASVQISFTTEN---EDNLPLTASVYIKHRGVLDNPNSIMVSKIKR 181

Query: 194 LVAAAVPNLDMGDVTVLDST 213
           L+A+AVP L   +V+V+   
Sbjct: 182 LIASAVPGLVPENVSVVSDR 201


>gi|167589321|ref|ZP_02381709.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia ubonensis Bu]
          Length = 264

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 10/170 (5%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDNG--------SSISVPSSMVGKARIHLAAQ 100
             LY  L  +D N++   L +A ID    ++           +SV    +  A   L A 
Sbjct: 34  KELYSGLSEADANQMIAVLGDAGIDASKDNDARDTSDRDAWQVSVADGDLHAALTVLRAN 93

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP     S  ELF K      T   + +  +  +  +++RT+Q I G+V ARV +V+P+
Sbjct: 94  GLPKPRHASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSRTLQDIEGVVVARVQVVIPE 152

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209
                      +A+V IR       ++ A  ++ LVA ++  L   +V++
Sbjct: 153 NDPLADKIRPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 202


>gi|194350683|gb|ACF53772.1| HrcJ [Erwinia mallotivora]
 gi|194350685|gb|ACF53773.1| HrcJ [Erwinia mallotivora]
 gi|194350693|gb|ACF53777.1| HrcJ [Brenneria lupinicola]
          Length = 146

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 4/147 (2%)

Query: 59  DVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
           D N ++  L   +I      +  G ++ V ++ + +A   L A GLP  +  +  E+F K
Sbjct: 1   DANEVAAELGRYHIQAEKLTNKEGITVLVDAAELNRAVHILDAAGLPRPARTNLGEVFQK 60

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
            N    T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +     +A+V 
Sbjct: 61  -NGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAPGEPVQPASAAVF 119

Query: 177 IRAINPSVYKSAE-AIRHLVAAAVPNL 202
           I+          E  IR +VA+++P L
Sbjct: 120 IKYRPDLDPDVIEPRIRRMVASSLPGL 146


>gi|325522916|gb|EGD01366.1| type III secretion protein SctJ [Burkholderia sp. TJI49]
          Length = 263

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 10/170 (5%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDNG--------SSISVPSSMVGKARIHLAAQ 100
             LY  L   D N++   L +A I     ++           +SV    +  A   L A 
Sbjct: 34  KELYSGLSERDANQMVAVLGDAGISASKDNDARDTSDRNAWQVSVADGDMQSALTVLQAN 93

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP  S  S  ELF K      T   + +  +  +  +++RT+Q I G+V ARV +V+P+
Sbjct: 94  GLPKPSYASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSRTLQDIEGVVVARVQVVIPE 152

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209
                      +A+V IR       ++ A  ++ LVA ++  L   +V++
Sbjct: 153 NDPLADKIKPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 202


>gi|194350695|gb|ACF53778.1| HrcJ [Erwinia psidii]
          Length = 146

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 4/147 (2%)

Query: 59  DVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
           D N ++  L   +I      +  G ++ V ++ + +A   L A GLP  +  +  E+F K
Sbjct: 1   DANEVAAELGRYHIQAEKLTNKEGITVLVDAAELNRAVHILDAAGLPRPARTNLGEVFQK 60

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
                 T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +     +A+V 
Sbjct: 61  DGVI-STPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAPGEPVQPASAAVF 119

Query: 177 IRAINPSVYKSAE-AIRHLVAAAVPNL 202
           I+          E  IR +VA+++P L
Sbjct: 120 IKYRPDLDPDVIEPRIRRMVASSLPGL 146


>gi|194350691|gb|ACF53776.1| HrcJ [Brenneria lupinicola]
          Length = 146

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 4/147 (2%)

Query: 59  DVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
           D N ++  L   +I      +  G ++ V ++ + +A   L A GLP  +  +  E+F K
Sbjct: 1   DANEVAAELGRYHIQAEKLTNKEGITVLVDAAELNRAVHILDAAGLPRPARTNLGEVFQK 60

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
            N    T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +     +A+V 
Sbjct: 61  -NGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAPGEPVQPASAAVF 119

Query: 177 IRAINPSVYKSAE-AIRHLVAAAVPNL 202
           I+          E  IR +VA+++P L
Sbjct: 120 IKYRPDLDPDVVEPRIRRMVASSLPGL 146


>gi|89897886|ref|YP_514996.1| type III secretion flagellar biosynthesis M-ring protein
           [Chlamydophila felis Fe/C-56]
 gi|89331258|dbj|BAE80851.1| type III secretion flagellar biosynthesis M-ring protein
           [Chlamydophila felis Fe/C-56]
          Length = 330

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 46/175 (26%), Positives = 71/175 (40%), Gaps = 19/175 (10%)

Query: 54  KLEVSDVNRISVALSEANIDFRI------SDNGSS------ISVPSSMVGKARIHLAAQG 101
            L   + N I V L    +  +       S  G S      I+VP++ + +A   L   G
Sbjct: 31  GLPGREANEIVVLLVSKGVAAQKQPQAAASTGGGSTEQLWDIAVPAAQITEALAILNQAG 90

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP     S  +LF K      +   ++I     L  ++A TI+ + GIV A V I     
Sbjct: 91  LPRMKGTSLLDLFAK-QGLVPSEMQEKIRYQEGLSEQMASTIRKMDGIVDASVQISFTTE 149

Query: 162 GSFRKIGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDST 213
               +     TASV I+    ++         I+ LVA+AVP L   +V+V+   
Sbjct: 150 ---AEENLPLTASVYIKHRGVLDNPNSIMVSKIKRLVASAVPGLSTENVSVISDR 201


>gi|172063766|ref|YP_001811417.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Burkholderia ambifaria MC40-6]
 gi|171996283|gb|ACB67201.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia ambifaria MC40-6]
          Length = 295

 Score =  104 bits (260), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 10/170 (5%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDNG--------SSISVPSSMVGKARIHLAAQ 100
             LY  L   D N++   L  A I     ++           +SV    +  A   L A 
Sbjct: 34  KELYSGLSERDANQMVAVLGAAGISASKDNDARDTSDRNAWLVSVADGDMQSALTVLQAN 93

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP  S  S  ELF K      T   + +  +  +  +++RT+Q I G+V ARV +V+P+
Sbjct: 94  GLPKPSYASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSRTLQDIEGVVVARVQVVIPE 152

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209
                      +A+V IR       ++ A  ++ LVA ++  L   +V++
Sbjct: 153 NDPLADKIKPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 202


>gi|115358974|ref|YP_776112.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Burkholderia ambifaria AMMD]
 gi|115284262|gb|ABI89778.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia ambifaria AMMD]
          Length = 309

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 10/170 (5%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDNG--------SSISVPSSMVGKARIHLAAQ 100
             LY  L   D N++   L +A I     ++           +SV    +  A   L A 
Sbjct: 48  KELYSGLSERDANQMVAVLGDAGISASKDNDARDTSDRNAWLVSVADGDMQSALTVLQAN 107

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP  S  S  ELF K      T   + +  +  +  +++RT+Q I G+V ARV +V+P+
Sbjct: 108 GLPKPSYASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSRTLQDIEGVVVARVQVVIPE 166

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209
                      +A+V IR       ++ A  ++ LVA ++  L   +V++
Sbjct: 167 NDPLADKIKPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 216


>gi|297620340|ref|YP_003708477.1| type III secretion lipoprotein SctJ [Waddlia chondrophila WSU
           86-1044]
 gi|297375641|gb|ADI37471.1| type III secretion lipoprotein SctJ [Waddlia chondrophila WSU
           86-1044]
          Length = 341

 Score =  104 bits (259), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 71/196 (36%), Gaps = 18/196 (9%)

Query: 32  PIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDNG---------- 80
            + + ++            +   L+  + N I V LS   +D  ++              
Sbjct: 13  ILFIVISLSLLTGCEKRKTIVNGLDEREANEIVVFLSNEGVDAAKVKSAEGSGGGGSKIA 72

Query: 81  -SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEI 139
              ISVP     +A   L   GLP  S  S   +F        +   + I     L  +I
Sbjct: 73  LWDISVPEEQAIEAMSMLNRAGLPKRSGQSLLGIF-SNTGLVPSEMQERIRYQAGLAEQI 131

Query: 140 ARTIQSISGIVAARVHIVMPDMGSFRKIGARP--TASVMIR---AINPSVYKSAEAIRHL 194
           A TI+   G++ A V I  P+         +   TASV ++    ++     +   I+ L
Sbjct: 132 ASTIRKFDGVLDAEVQISFPEEDPLNPGQKKGEITASVYVKHSGVLDDPNTHAITKIKRL 191

Query: 195 VAAAVPNLDMGDVTVL 210
           V  AV  L   +VTV+
Sbjct: 192 VTGAVTGLKYDNVTVI 207


>gi|218887520|ref|YP_002436841.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758474|gb|ACL09373.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 277

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 69/184 (37%), Gaps = 8/184 (4%)

Query: 31  VPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI---SDNGSSISVPS 87
             + +F+             LY  L     N +   L    +          G ++SV  
Sbjct: 18  AALAVFLLMLLTGCKAE---LYKGLNEEQANTMLATLLRHGVPAEKLAAGKEGYALSVER 74

Query: 88  SMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSIS 147
             + +A   L    LP     +  ++F        +   ++     A+  E++ T   I 
Sbjct: 75  DQIVRALEILRENSLPREQYQNLGKVFSGD-GMIASPSEEKARLAYAISQELSDTFSRID 133

Query: 148 GIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS-VYKSAEAIRHLVAAAVPNLDMGD 206
           G++ ARVH+V+    +  +     +A+V +R    S V      IR L A AVP LD   
Sbjct: 134 GVLTARVHVVLASSETASETRVPASAAVFLRHGPESPVVNLIPKIRELAAKAVPGLDYER 193

Query: 207 VTVL 210
           V+V+
Sbjct: 194 VSVM 197


>gi|229896277|ref|ZP_04511447.1| Flagellar M-ring protein fliF [Yersinia pestis Pestoides A]
 gi|229701200|gb|EEO89229.1| Flagellar M-ring protein fliF [Yersinia pestis Pestoides A]
          Length = 115

 Score =  103 bits (258), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 36/68 (52%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
             +  SP Y  LY  L   D   I   L++ NI +R +DNG ++ +P+  V + R+ LA 
Sbjct: 45  MLWAKSPDYRVLYSNLSDRDGGDIVTQLTQLNIPYRFADNGGALLIPAEKVHETRLRLAQ 104

Query: 100 QGLPSSSS 107
           QGLP   S
Sbjct: 105 QGLPKGGS 112


>gi|187919914|ref|YP_001888945.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia phytofirmans PsJN]
 gi|187718352|gb|ACD19575.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia phytofirmans PsJN]
          Length = 273

 Score =  103 bits (258), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 5/164 (3%)

Query: 51  LYVKLEVSDVNRISVALSE---ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           L+  LE    N+I   LS+     +  R +D   ++SV    V  A        LP  + 
Sbjct: 20  LFEGLEEDQANQIIAVLSQHGIEGVKDRSADKKWNVSVDVDDVVSATEITREYALPRDNH 79

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
            +  +LF +            +  V  L  E++ T++ I G++ ARVHIV P+     + 
Sbjct: 80  ANLGDLFSR-QGLISNPDEDRVRYVYGLTQELSETLEKIDGVLVARVHIVQPERDPLMRQ 138

Query: 168 GARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
            A P+ASVM+R  +    +   + IR+LVA +V  L    V++ 
Sbjct: 139 VAPPSASVMLRYRSDYNLEYMRDKIRNLVAGSVEGLTPDRVSLT 182


>gi|330443944|ref|YP_004376930.1| type III secretion protein SctJ [Chlamydophila pecorum E58]
 gi|328807054|gb|AEB41227.1| type III secretion protein SctJ [Chlamydophila pecorum E58]
          Length = 330

 Score =  103 bits (257), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 71/175 (40%), Gaps = 20/175 (11%)

Query: 54  KLEVSDVNRISVALSEANIDFRI------SDNGSS------ISVPSSMVGKARIHLAAQG 101
            L   + N I V L    +  +       S  G S      ISVPS+ + +A   L   G
Sbjct: 31  GLPGREANEIVVLLVSKGVAAQKLPKAAASTGGGSTEQLWDISVPSAQITEALAILNQAG 90

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP     S  +LF K      +   ++I     L  ++A TI+ + GIV A V I     
Sbjct: 91  LPRMKGTSLLDLFAK-QGLVPSELQEKIRYQEGLSEQMASTIRKMDGIVDASVQISFSTE 149

Query: 162 GSFRKIGARPTASVMIRAINPSVYKS---AEAIRHLVAAAVPNLDMGDVTVLDST 213
               +     TASV ++        +   A  I+ L+A+AVP L   +V+V+   
Sbjct: 150 ----EDVVPLTASVYVKHRGVLDNPNSIMASKIKRLIASAVPGLTPENVSVVSDR 200


>gi|16082747|ref|NP_395193.1| needle complex inner membrane lipoprotein [Yersinia pestis CO92]
 gi|31795324|ref|NP_857723.1| needle complex inner membrane lipoprotein [Yersinia pestis KIM]
 gi|31795467|ref|NP_857918.1| needle complex inner membrane lipoprotein [Yersinia pestis KIM]
 gi|45478525|ref|NP_995352.1| putative type III secretion lipoprotein YscJ [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51593928|ref|YP_068495.1| yscJ, ylpB; putative type III secretion lipoprotein [Yersinia
           pseudotuberculosis IP 32953]
 gi|108793648|ref|YP_636797.1| type III secretion lipoprotein [Yersinia pestis Antiqua]
 gi|145597125|ref|YP_001154589.1| type III secretion lipoprotein [Yersinia pestis Pestoides F]
 gi|149192680|ref|YP_001293912.1| putative type III secretion lipoprotein [Yersinia pestis CA88-4125]
 gi|162417757|ref|YP_001604492.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           Angola]
 gi|165927768|ref|ZP_02223600.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165940079|ref|ZP_02228613.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166011735|ref|ZP_02232633.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166214472|ref|ZP_02240507.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167401937|ref|ZP_02307423.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167422389|ref|ZP_02314142.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167422456|ref|ZP_02314209.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167422890|ref|ZP_02314643.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167426845|ref|ZP_02318598.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|186897504|ref|YP_001874615.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Yersinia
           pseudotuberculosis PB1/+]
 gi|229896875|ref|ZP_04512035.1| putative type III secretion lipoprotein [Yersinia pestis Pestoides
           A]
 gi|229900230|ref|ZP_04515366.1| putative type III secretion lipoprotein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|270491089|ref|ZP_06208161.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Yersinia pestis KIM D27]
 gi|294496851|ref|YP_003560548.1| needle complex inner membrane lipoprotein [Yersinia pestis Z176003]
 gi|322836586|ref|YP_004210082.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis Java
           9]
 gi|57015226|sp|P69972|YSCJ_YERPE RecName: Full=Yop proteins translocation lipoprotein J; AltName:
           Full=Lipoprotein ylpB; AltName: Full=Low calcium
           response locus protein KA; Flags: Precursor
 gi|57015227|sp|P69973|YSCJ_YERPS RecName: Full=Yop proteins translocation lipoprotein J; AltName:
           Full=Lipoprotein ylpB; AltName: Full=Low calcium
           response locus protein KA; Flags: Precursor
 gi|155466|gb|AAA27651.1| lcrKa [Yersinia pseudotuberculosis]
 gi|2996284|gb|AAC62607.1| Yop proteins translocation lipoprotein J [Yersinia pestis KIM 10]
 gi|3822055|gb|AAC69775.1| type III secretion protein [Yersinia pestis KIM 10]
 gi|5832479|emb|CAB54936.1| putative type III secretion lipoprotein [Yersinia pestis CO92]
 gi|45357147|gb|AAS58543.1| putative type III secretion lipoprotein YscJ [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51591625|emb|CAF25429.1| yscJ, ylpB; putative type III secretion lipoprotein [Yersinia
           pseudotuberculosis IP 32953]
 gi|108782195|gb|ABG16250.1| type III secretion lipoprotein [Yersinia pestis Antiqua]
 gi|145212893|gb|ABP42299.1| type III secretion lipoprotein [Yersinia pestis Pestoides F]
 gi|148872338|gb|ABR14828.1| putative type III secretion lipoprotein [Yersinia pestis CA88-4125]
 gi|162354777|gb|ABX88724.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           Angola]
 gi|165911989|gb|EDR30632.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165920204|gb|EDR37505.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165989342|gb|EDR41643.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166204365|gb|EDR48845.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166958180|gb|EDR55201.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|166958626|gb|EDR55647.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|166958693|gb|EDR55714.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167048665|gb|EDR60073.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167054144|gb|EDR63971.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|186700530|gb|ACC91158.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Yersinia pseudotuberculosis PB1/+]
 gi|229686750|gb|EEO78830.1| putative type III secretion lipoprotein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229700146|gb|EEO88185.1| putative type III secretion lipoprotein [Yersinia pestis Pestoides
           A]
 gi|262363863|gb|ACY60583.1| needle complex inner membrane lipoprotein [Yersinia pestis D106004]
 gi|262364019|gb|ACY64356.1| needle complex inner membrane lipoprotein [Yersinia pestis D182038]
 gi|270334832|gb|EFA45611.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Yersinia pestis KIM D27]
 gi|294352439|gb|ADE66496.1| needle complex inner membrane lipoprotein [Yersinia pestis Z176003]
 gi|317374463|gb|ADV16638.1| type III secretion bridge between inner and outermembrane
           lipoprotein [Yersinia pestis]
 gi|320017494|gb|ADW01065.1| putative type III secretion lipoprotein [Yersinia pestis biovar
           Medievalis str. Harbin 35]
 gi|321161360|gb|ADW67066.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis Java
           9]
          Length = 244

 Score =  103 bits (257), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 73/167 (43%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGLPSS 105
            +LY  +   + N +   L +  +      +      + V  S V +A   L  +G P  
Sbjct: 21  VDLYTGISQKEGNEMLALLRQEGLSADKEPDKDGKIKLLVEESDVAQAIDILKRKGYPHE 80

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
           S ++  ++F K      +   +      A   EI+RT+  I G++ ARVH+V+P+  + +
Sbjct: 81  SFSTLQDVFPKD-GLISSPIEELARLNYAKAQEISRTLSEIDGVLVARVHVVLPEEQNNK 139

Query: 166 -KIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
            K G   +ASV I+      + +    I+ LV  ++  L    ++V+
Sbjct: 140 GKKGVAASASVFIKHAADIQFDTYIPQIKQLVNNSIEGLAYDRISVI 186


>gi|170737791|ref|YP_001779051.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Burkholderia cenocepacia MC0-3]
 gi|169819979|gb|ACA94561.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia cenocepacia MC0-3]
          Length = 295

 Score =  103 bits (257), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 10/170 (5%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDNG--------SSISVPSSMVGKARIHLAAQ 100
             LY  L   D N++   L +A I     ++           +SV    +  A   L A 
Sbjct: 34  KELYSGLSERDANQMVAVLGDAGISASKDNDARDTSDRNAWLVSVADGDMQAALTVLQAN 93

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP  S  S  ELF K      T   + +  +  +  +++RT+Q I G+V ARV +V+P+
Sbjct: 94  GLPKPSYASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSRTLQDIEGVVVARVQVVIPE 152

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209
                      +A+V IR       ++ A  ++ LVA ++  L   +V++
Sbjct: 153 NDPLADKIKPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 202


>gi|312958838|ref|ZP_07773357.1| type III secretion system rscJ [Pseudomonas fluorescens WH6]
 gi|311286608|gb|EFQ65170.1| type III secretion system rscJ [Pseudomonas fluorescens WH6]
          Length = 265

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 79/181 (43%), Gaps = 24/181 (13%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSM----------VGKARIH 96
               L+ +L   + N +   L++ +I  +         VP+            +G+A   
Sbjct: 22  ERVELHRQLSEQEANEVIAELADKHIRAQ--------KVPAKDGVVVVVDAVDIGRAVRT 73

Query: 97  LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHI 156
           L A GLP  +  +  + F K      T   +    + AL  E+  T+ +I G++ ARVH+
Sbjct: 74  LEAVGLPKVARTTLGDTFRKDGVI-STPLEERARYIYALSQELEATLSNIDGVIVARVHV 132

Query: 157 VMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVTVLDSTGK 215
           V+P+  +  +     +ASV I+        +  + +R +VA+++P +     T +D+  K
Sbjct: 133 VLPERIAPGEPVQPASASVFIKHDPRLDPDNIRSRVRRMVASSIPGMS----TTVDNPQK 188

Query: 216 L 216
           L
Sbjct: 189 L 189


>gi|107025872|ref|YP_623383.1| Type III secretion system lipoprotein HrcJ/YscJ [Burkholderia
           cenocepacia AU 1054]
 gi|116692944|ref|YP_838477.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Burkholderia cenocepacia HI2424]
 gi|105895246|gb|ABF78410.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia cenocepacia AU 1054]
 gi|116650944|gb|ABK11584.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia cenocepacia HI2424]
          Length = 292

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 10/170 (5%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDNG--------SSISVPSSMVGKARIHLAAQ 100
             LY  L   D N++   L +A I     ++           +SV    +  A   L A 
Sbjct: 34  KELYSGLSERDANQMVAVLGDAGISASKDNDARDTSDRNAWLVSVADGDMQAALTVLQAN 93

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP  S  S  ELF K      T   + +  +  +  +++RT+Q I G+V ARV +V+P+
Sbjct: 94  GLPKPSYASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSRTLQDIEGVVVARVQVVIPE 152

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209
                      +A+V IR       ++ A  ++ LVA ++  L   +V++
Sbjct: 153 NDPLADKIKPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 202


>gi|206563892|ref|YP_002234655.1| type III secretion system protein [Burkholderia cenocepacia J2315]
 gi|18092671|gb|AAL59400.1| BcscJ [Burkholderia cenocepacia]
 gi|28394252|gb|AAO31727.1| BcscJ [Burkholderia cenocepacia]
 gi|198039932|emb|CAR55910.1| type III secretion system protein [Burkholderia cenocepacia J2315]
          Length = 294

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 10/170 (5%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDNG--------SSISVPSSMVGKARIHLAAQ 100
             LY  L   D N++   L +A I     ++           +SV    +  A   L A 
Sbjct: 34  KELYSGLSERDANQMVAVLGDAGISASKDNDARDTSDRNAWLVSVADGDMQAALTVLQAN 93

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP  S  S  ELF K      T   + +  +  +  +++RT+Q I G+V ARV +V+P+
Sbjct: 94  GLPKPSYASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSRTLQDIEGVVVARVQVVIPE 152

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209
                      +A+V IR       ++ A  ++ LVA ++  L   +V++
Sbjct: 153 NDPLADKIKPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 202


>gi|291562021|emb|CBL40836.1| Flagellar biosynthesis/type III secretory pathway lipoprotein
           [butyrate-producing bacterium SS3/4]
          Length = 420

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/307 (14%), Positives = 94/307 (30%), Gaps = 31/307 (10%)

Query: 113 LFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR---KIGA 169
           ++        T   +E   +  L+  +   I    G+  A+V I       +        
Sbjct: 1   MYRNNAGIMSTEKDKEKYTLYELQDRLGAQIGLFEGVRDAKVTIAEGGTQKYALDDTQQT 60

Query: 170 RPTASVMIRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL 227
             +ASV++            A AI++L+A AV  ++  +V+V D+   +    E E    
Sbjct: 61  DASASVVVTMDPGQDLTDTKAAAIKNLIARAVKGMNFTNVSVFDAATMMEVGGEDEAGNT 120

Query: 228 GKS----LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK 283
             +      +   ++  I  N+ + L    G      +V   LNM       + Y    K
Sbjct: 121 AGTGKDVAELTSQVEKSIAGNVRRVLELMYGQGKVAVSVKGTLNMQKLIQETVQYTTPDK 180

Query: 284 V---------ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEE 334
           V         E+     ++   + +    +A             +       +       
Sbjct: 181 VDQNDKTGLLEKEETAGENTGSTSSGNGGAAGADANADTPRYTGQTGTQAGSDTYSNNSA 240

Query: 335 QSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSA 394
              +  N+       D   LE  ++ V ++    +                A++  +V+ 
Sbjct: 241 IREWLYNSTKEQRQIDPGVLENTTVGVTIDTDDTSIAD-------------ADLVSLVAN 287

Query: 395 ATGINSR 401
           + GI   
Sbjct: 288 SAGITQE 294


>gi|254250200|ref|ZP_04943520.1| Secretory protein YscJ/FliF [Burkholderia cenocepacia PC184]
 gi|124876701|gb|EAY66691.1| Secretory protein YscJ/FliF [Burkholderia cenocepacia PC184]
          Length = 238

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 10/170 (5%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDNG--------SSISVPSSMVGKARIHLAAQ 100
             LY  L   D N++   L +A I     ++           +SV    +  A   L A 
Sbjct: 34  KELYSGLSERDANQMVAVLGDAGISASKDNDARDTSDRNAWLVSVADGDMQAALTVLQAN 93

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP  S  S  ELF K      T   + +  +  +  +++RT+Q I G+V ARV +V+P+
Sbjct: 94  GLPKPSYASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSRTLQDIEGVVVARVQVVIPE 152

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209
                      +A+V IR       ++ A  ++ LVA ++  L   +V++
Sbjct: 153 NDPLADKIKPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 202


>gi|94987605|ref|YP_595538.1| putative type III secretion protein [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94731854|emb|CAJ55217.1| putative type III secretion protein [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 278

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 64/166 (38%), Gaps = 5/166 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGLPSS 105
             +Y  L     N +   L +  I     + G    +I V  S + ++   L   G P  
Sbjct: 43  VEVYQGLNEMQANAMLATLLKHGIVAEKQNTGKAGYTIRVDKSRLAESLELLRESGFPKE 102

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
              S   +F        ++   +     AL  E+A T   ISG+++ARVH+ +       
Sbjct: 103 QYKSLGSIF-SGEGMIASASEDQARLSYALSQELAGTFSRISGVLSARVHVALASGDQEL 161

Query: 166 KIGARPTASVMIRAINPS-VYKSAEAIRHLVAAAVPNLDMGDVTVL 210
           +     +A++ +     S V      IR L + +VP L    V+V+
Sbjct: 162 EQRTPASAAIFLLHTPSSPVVNLVPKIRELTSMSVPELSPDKVSVV 207


>gi|257487964|ref|ZP_05642005.1| type III secretion component, putative [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 222

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/154 (27%), Positives = 72/154 (46%), Gaps = 7/154 (4%)

Query: 62  RISVALSEANIDF--RISDNGS-SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
            +   L    I    ++ DNG   + V      +A   L   GLP  S ++  E+F K N
Sbjct: 1   AMLAVLLRDGIPASRKVQDNGQLKVMVDEKRFAQAMAALDDAGLPGQSFSNMGEVF-KGN 59

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178
               +   +    V AL  E++ T+  I GI++ARVH+V+PD    +++ +  +ASV++R
Sbjct: 60  GLVSSPVQERAQMVYALSEELSHTVSQIDGILSARVHVVLPDNDLLKRVISPSSASVLVR 119

Query: 179 AINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVL 210
             +P    +     I+ LVA  +  L    V+V 
Sbjct: 120 -FDPRTDINVLIPQIKTLVANGISGLGYDGVSVT 152


>gi|328468926|gb|EGF39886.1| putative type III secretion lipoprotein [Vibrio parahaemolyticus
           10329]
          Length = 248

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 74/188 (39%), Gaps = 13/188 (6%)

Query: 28  VILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---IS 84
            + + + LF+             LY  +   + N +   L    +      +  +   + 
Sbjct: 8   ALCLVLALFLVGC-------QTELYTNVSQKEGNEMLSILLSEGVVATKEPDKDNKVKLM 60

Query: 85  VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144
           V SS +  A   L  +G P    ++  E+F K +    +   +    V A   E++ T+ 
Sbjct: 61  VDSSQIAFAVDALKRKGYPREQFSTLKEVFPKDD-LISSPLAERARLVYAKSQELSSTLS 119

Query: 145 SISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNL 202
            I G++ ARVH+V+ D      +     +ASV I+        S    I+ LV  ++  L
Sbjct: 120 QIDGVLVARVHVVLEDQDLRPGERPTPASASVFIKHAADVALDSYVPQIKLLVNNSIEGL 179

Query: 203 DMGDVTVL 210
           +   ++V+
Sbjct: 180 NYDRISVV 187


>gi|62185504|ref|YP_220289.1| putative type III export protein [Chlamydophila abortus S26/3]
 gi|62148571|emb|CAH64343.1| putative type III export protein [Chlamydophila abortus S26/3]
          Length = 330

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 73/196 (37%), Gaps = 21/196 (10%)

Query: 35  LFMAARFF--VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS------------DNG 80
           LF     F   +      +   L   + N I V L    +  +              +  
Sbjct: 10  LFFIMTLFCCTSCNSRSLIVHGLAGREANEIVVLLVSKGVAAQKQPQAAASTGGASAEQL 69

Query: 81  SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140
             ISVP++ + +A   L   GLP     S  +LF K      +   ++I     L  ++A
Sbjct: 70  WDISVPAAQITEALAILNQAGLPRMKGTSLLDLFAK-QGLVPSEMQEKIRYQEGLSEQMA 128

Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS---AEAIRHLVAA 197
            TI+ + GIV A V I         +     TASV I+        +      I+ LVA+
Sbjct: 129 STIRKMDGIVDASVQISFTTE---AEDNLPLTASVYIKHRGVLDNPNSIMVSKIKRLVAS 185

Query: 198 AVPNLDMGDVTVLDST 213
           AVP L   +V+V+   
Sbjct: 186 AVPGLSTENVSVISDR 201


>gi|134294015|ref|YP_001117751.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Burkholderia vietnamiensis G4]
 gi|134137172|gb|ABO58286.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia vietnamiensis G4]
          Length = 297

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 10/170 (5%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDNG--------SSISVPSSMVGKARIHLAAQ 100
             LY  L   D N +   L +A I     ++           +SV    +  A   L A 
Sbjct: 34  KELYSGLSERDANEMVAVLGDAGIGASKDNDARDTSDRNAWQVSVADGDMQSALTVLQAN 93

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP  S  S  ELF K      T   + +  +  +  +++RT+Q I G+V ARV +V+P+
Sbjct: 94  GLPKPSYASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSRTLQDIEGVVVARVQVVIPE 152

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209
                      +A+V IR       ++ A  ++ LVA ++  L   +V++
Sbjct: 153 NDPLADKIKPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 202


>gi|10955579|ref|NP_052420.1| hypothetical protein pYVe227_p43 [Yersinia enterocolitica]
 gi|28373017|ref|NP_783695.1| hypothetical protein pYVa12790_p42 [Yersinia enterocolitica]
 gi|32470307|ref|NP_863542.1| hypothetical protein pYVe8081_p37 [Yersinia enterocolitica]
 gi|122815831|ref|YP_001004097.1| type III secretion lipoprotein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|332163601|ref|YP_004424943.1| type III secretion lipoprotein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|267571|sp|Q01251|YSCJ_YEREN RecName: Full=Yop proteins translocation lipoprotein J; AltName:
           Full=Lipoprotein ylpB; Flags: Precursor
 gi|14579365|gb|AAK69242.1|AF336309_37 YscJ [Yersinia enterocolitica]
 gi|155559|gb|AAC37027.1| yscJ [Yersinia enterocolitica]
 gi|4324366|gb|AAD16843.1| YscJ [Yersinia enterocolitica W22703]
 gi|28302112|gb|AAN37545.2| YscJ [Yersinia enterocolitica]
 gi|121663705|emb|CAL10067.1| type III secretion lipoprotein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|325667831|gb|ADZ44474.1| type III secretion lipoprotein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 244

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 73/167 (43%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGLPSS 105
            +LY  +   + N +   L +  +      +      + V  S V +A   L  +G P  
Sbjct: 21  VDLYTGISQKEGNEMLALLRQEGLSADKEPDKDGKIKLLVEESDVAQAIDILKRKGYPHE 80

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
           S ++  ++F K      +   +      A   EI+RT+  I G++ ARVH+V+P+  + +
Sbjct: 81  SFSTLQDVFPKD-GLISSPIEELARLNYAKAQEISRTLSEIDGVLVARVHVVLPEEQNNK 139

Query: 166 -KIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
            K G   +ASV I+      + +    I+ LV  ++  L    ++V+
Sbjct: 140 GKKGVAASASVFIKHAADIQFDTYIPQIKQLVNNSIEGLAYDRISVI 186


>gi|153836290|ref|ZP_01988957.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio
           parahaemolyticus AQ3810]
 gi|149750565|gb|EDM61310.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio
           parahaemolyticus AQ3810]
          Length = 248

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 74/188 (39%), Gaps = 13/188 (6%)

Query: 28  VILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---IS 84
            + + + LF+             LY  +   + N +   L    +      +  +   + 
Sbjct: 8   TLCLVLALFLVGC-------QTELYTNVSQKEGNEMLSILLSEGVVATKEPDKDNKVKLM 60

Query: 85  VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144
           V SS +  A   L  +G P    ++  E+F K +    +   +    V A   E++ T+ 
Sbjct: 61  VDSSQIAFAVDALKRKGYPREQFSTLKEVFPKDD-LISSPLAERARLVYAKSQELSSTLS 119

Query: 145 SISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNL 202
            I G++ ARVH+V+ D      +     +ASV I+        S    I+ LV  ++  L
Sbjct: 120 QIDGVLVARVHVVLEDQDLRPGERPTPASASVFIKHAADVALDSYVPQIKLLVNNSIEGL 179

Query: 203 DMGDVTVL 210
           +   ++V+
Sbjct: 180 NYDRISVV 187


>gi|695778|emb|CAA55109.1| lcrKa [Yersinia pestis]
          Length = 236

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 73/167 (43%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGLPSS 105
            +LY  +   + N +   L +  +      +      + V  S V +A   L  +G P  
Sbjct: 13  VDLYTGISQKEGNEMLALLPQEGLSADKEPDKDGKIKLLVEESDVAQAIDILKRKGYPHE 72

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
           S ++  ++F K      +   +      A   EI+RT+  I G++ ARVH+V+P+  + +
Sbjct: 73  SFSTLQDVFPKD-GLISSPIEELARLNYAKAQEISRTLSEIDGVLVARVHVVLPEEQNNK 131

Query: 166 -KIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
            K G   +ASV I+      + +    I+ LV  ++  L    ++V+
Sbjct: 132 GKKGVAASASVFIKHAADIQFDTYIPQIKQLVNNSIEGLAYDRISVI 178


>gi|28898464|ref|NP_798069.1| putative type III secretion lipoprotein [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|260365094|ref|ZP_05777665.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio
           parahaemolyticus K5030]
 gi|260879510|ref|ZP_05891865.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio
           parahaemolyticus AN-5034]
 gi|260895015|ref|ZP_05903511.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio
           parahaemolyticus Peru-466]
 gi|28806682|dbj|BAC59953.1| putative type III secretion lipoprotein [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308085933|gb|EFO35628.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio
           parahaemolyticus Peru-466]
 gi|308093438|gb|EFO43133.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio
           parahaemolyticus AN-5034]
 gi|308111628|gb|EFO49168.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio
           parahaemolyticus K5030]
          Length = 248

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 74/188 (39%), Gaps = 13/188 (6%)

Query: 28  VILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---IS 84
            + + + LF+             LY  +   + N +   L    +      +  +   + 
Sbjct: 8   TLCLVLALFLVGC-------QTELYTNVSQKEGNEMLSILLSEGVVATKEPDKDNKVKLM 60

Query: 85  VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144
           V SS +  A   L  +G P    ++  E+F K +    +   +    V A   E++ T+ 
Sbjct: 61  VDSSQIAFAVDALKRKGYPREQFSTLKEVFPKDD-LISSPLAERARLVYAKSQELSSTLS 119

Query: 145 SISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNL 202
            I G++ ARVH+V+ D      +     +ASV I+        S    I+ LV  ++  L
Sbjct: 120 QIDGVLVARVHVVLEDQDLRPGERPTPASASVFIKHAADVALDSYVPQIKLLVNNSIEGL 179

Query: 203 DMGDVTVL 210
           +   ++V+
Sbjct: 180 NYDRISVV 187


>gi|51103218|gb|AAT96359.1| HrcJ [Pseudomonas viridiflava]
          Length = 263

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 75/156 (48%), Gaps = 4/156 (2%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108
           L+  L   D N +   L+  NID   R+   G ++ V +  + +A   L A GLP  S +
Sbjct: 27  LHRDLTEQDANEVLAELASKNIDAQKRLDKGGVAVLVSTQDISRAVRVLEAVGLPRRSRS 86

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           +  ++F K      +   +    + AL  E+ +T+  I G+V ARVH+V+P+  +  +  
Sbjct: 87  TLGQVFRKEGVI-SSPLEERARYIYALSQELEQTLSQIDGVVVARVHVVLPERIAPGEPV 145

Query: 169 ARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLD 203
              +A+V I+        S    IR +VA+++P + 
Sbjct: 146 QPASAAVFIKHRADLEPDSVLPRIRRMVASSIPGMT 181


>gi|197121159|ref|YP_002133110.1| secretory protein YscJ/FliF family protein [Anaeromyxobacter sp. K]
 gi|196171008|gb|ACG71981.1| secretory protein YscJ/FliF family protein [Anaeromyxobacter sp. K]
          Length = 239

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 7/134 (5%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRIS-----DNGSSISVPSSMVGKARIHLAAQGLP 103
           + L   L+    N + VAL E  I    +     D G  + V  +   +AR  LA + LP
Sbjct: 20  EALLHGLDEPQANDVLVALDEGGIAAEKAREDGADAGWEVRVAPADAVRARRVLAERDLP 79

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
                +G++      S   T+  +    + AL GE+AR+I++I G+V ARVH+ +P    
Sbjct: 80  RQ-RPAGFDAVLAKGSMVPTATEEHALYLHALSGELARSIEAIDGVVGARVHLGLPQADP 138

Query: 164 FRKIGAR-PTASVM 176
           FR      P A+V+
Sbjct: 139 FRPGERPAPRAAVL 152


>gi|29840690|ref|NP_829796.1| type III secretion protein SctJ [Chlamydophila caviae GPIC]
 gi|29835040|gb|AAP05674.1| type III secretion protein SctJ [Chlamydophila caviae GPIC]
          Length = 330

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 68/175 (38%), Gaps = 19/175 (10%)

Query: 54  KLEVSDVNRISVALSEANIDFRIS------------DNGSSISVPSSMVGKARIHLAAQG 101
            L   + N I V L    +  +              +    ISVP+  + +A   L   G
Sbjct: 31  GLPGREANEIVVLLVSKGVAAQKQPQAAASTGGAATEQLWDISVPAPQITEALAILNQAG 90

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP     S  +LF K      +   ++I     L  ++A TI+ + GIV A V I     
Sbjct: 91  LPRMKGTSLLDLFAK-QGLVPSEMQEKIRYQEGLSEQMASTIRKMDGIVDASVQISFTTD 149

Query: 162 GSFRKIGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDST 213
               +     TASV I+    ++         I+ LVA+AVP L   +V+V+   
Sbjct: 150 ---AEDNLPLTASVYIKHRGVLDNPNSIMVSKIKRLVASAVPGLSTENVSVISDR 201


>gi|110632466|ref|YP_672674.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Mesorhizobium sp. BNC1]
 gi|110283450|gb|ABG61509.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Chelativorans sp. BNC1]
          Length = 266

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 75/192 (39%), Gaps = 11/192 (5%)

Query: 18  GRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS 77
            R R+  L +V+L   +    +           LY  L   + N +   L E +ID    
Sbjct: 12  SRPRLSRLGAVLLAFALCAFLSA------CKVPLYSGLSEQEANDMLGKLLEYDIDATKQ 65

Query: 78  DNGS---SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134
            +     ++ V  +  G+A   L + GLP     +  ++F        +   +      A
Sbjct: 66  ADKDNYITLLVDEAQFGQAVDLLKSFGLPRPQFETIGKVFTGD-GLVTSPVKEWARLNFA 124

Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM-IRAINPSVYKSAEAIRH 193
           L  E+++ + SI G+V A V I  P   +       P+ASV+ I   +    +    IR 
Sbjct: 125 LSQELSKMVSSIPGVVLAEVQIANPRKTTPFDEVPPPSASVLAIVNRSAVTAELVPRIRQ 184

Query: 194 LVAAAVPNLDMG 205
           LVA ++ N+   
Sbjct: 185 LVAHSIENVQYE 196


>gi|46562142|ref|YP_009157.1| type III secretion lipoprotein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46447679|gb|AAS94345.1| type III secretion lipoprotein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311235505|gb|ADP88358.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Desulfovibrio vulgaris RCH1]
          Length = 271

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 65/164 (39%), Gaps = 5/164 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           LY  L     N +   L +  I+        NG ++SV    V +A   L    LP    
Sbjct: 34  LYKGLNEEQANTMLATLLKRGIEVDKQSEGKNGYTLSVERRQVVQALEVLRENSLPREQY 93

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
            S  ++F        +   ++     A+  E+A T   I G++ AR H+V+         
Sbjct: 94  QSLGKVFSGD-GMIASPSEEKARLSYAISQELADTFSRIDGVLTARAHVVLASSDVGTDT 152

Query: 168 GARPTASVMIR-AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
               +A+V +R   +  V      IR + A AVP LD   V+V+
Sbjct: 153 RTPASAAVFLRHTEDSPVVNLIPKIREMTAKAVPGLDYEKVSVM 196


>gi|167842284|ref|ZP_02468968.1| type III secretion system apparatus lipoprotein [Burkholderia
           thailandensis MSMB43]
          Length = 247

 Score =  100 bits (250), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 68/166 (40%), Gaps = 6/166 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLPSS 105
             LY  L  ++ N++   L   +ID     I D   +I V       A   L   GLP+ 
Sbjct: 23  TELYSNLPEAEANQMLALLMLRHIDADKKVIKDGNVTIRVEPGQFVNAVELLRQNGLPAR 82

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
              +  E+F        +   ++       E ++ + ++++ G++ A+V +        R
Sbjct: 83  KLATMEEMFPSGQ-LVTSPAQEQAKIQFLKEQQLEKMLRAMDGVINAQVSVAEGAAQD-R 140

Query: 166 KIGARPTASVMIRAINP-SVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
           +    P+A+V ++     +       IR LV + VPNL    V+V+
Sbjct: 141 RDPEPPSAAVFVKYSPEYNFAARVPEIRSLVVSGVPNLSPERVSVV 186


>gi|257484919|ref|ZP_05638960.1| flagellar MS-ring protein [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 145

 Score =  100 bits (250), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 64/166 (38%), Gaps = 27/166 (16%)

Query: 395 ATGINSRRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALVFLVGTL 450
           A G ++ RGD++++ ++ F   +           Q  F DI+ +            VG +
Sbjct: 1   AVGFDASRGDSVSVINVPFSSERAEVLPEASFYSQPWFWDIVKQ-----------AVGVI 49

Query: 451 LVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF 509
            +  L    LR  L NI   K  E+ G               G + ND ++L      + 
Sbjct: 50  FILILVFGVLRPVLTNITTGKSKELAGFGG-DAELGGMGGLDGELSNDRVSLGGPQSILL 108

Query: 510 -SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
            S +    +++N+         +  ++  +  R A+++++W  ++ 
Sbjct: 109 PSPTEGYDAQLNA---------IKSLVAEDPGRVAQVVKEWINTDE 145


>gi|120586845|ref|YP_961190.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Desulfovibrio vulgaris subsp. vulgaris DP4]
 gi|120564259|gb|ABM30002.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Desulfovibrio vulgaris DP4]
          Length = 271

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 65/164 (39%), Gaps = 5/164 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           LY  L     N +   L +  I+        NG ++SV    V +A   L    LP    
Sbjct: 34  LYKGLNEEQANTMLATLLKRGIEVDKQSEGKNGYTLSVERRQVVQALEVLRENSLPREQY 93

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
            S  ++F        +   ++     A+  E+A T   I G++ AR H+V+         
Sbjct: 94  QSLGKVFSGD-GMIASPSEEKARLSYAISQELADTFSRIDGVLTARAHVVLASSDVGTDT 152

Query: 168 GARPTASVMIR-AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
               +A+V +R   +  V      IR + A AVP LD   V+V+
Sbjct: 153 RTPASAAVFLRHTEDSPVVNLIPKIREMTAKAVPGLDYEKVSVM 196


>gi|32474826|ref|NP_867820.1| polar flagellar M-ring protein FliF [Rhodopirellula baltica SH 1]
 gi|32445366|emb|CAD75367.1| probable polar flagellar M-ring protein FliF [Rhodopirellula
           baltica SH 1]
 gi|327539960|gb|EGF26559.1| polar flagellar M-ring protein FliF [Rhodopirellula baltica WH47]
          Length = 545

 Score =  100 bits (249), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 85/566 (15%), Positives = 173/566 (30%), Gaps = 48/566 (8%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           L QF    +++     +I   ++   I+         ++P  + L      S+       
Sbjct: 6   LDQFRSIYSTMPVPSRIIAGLLLTAIIVAMGFLVRGNSTPSSEYLLGGRSFSE-----RD 60

Query: 67  LSEANIDFRISD------NGSSISVPSSMVGKARIHL-AAQGLPSSSSNSGYELFDKVNS 119
           L  A + F  +D       G  I +P     +    L ++  LP S   S     +K + 
Sbjct: 61  LDAAEVAFGNADLRGWTREGRRIKIPIESRSEFLKALESSASLPLSLRTSVQAAIEKSSP 120

Query: 120 FGLTSFMQEITRVR-ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178
           F   S  Q + R R A   +IAR+I     +  ARV     +     +   + +ASV + 
Sbjct: 121 FE--SNEQRMARERNAKLLDIARSIMMFDEVRTARVEYDQGERMGLSRTRPQ-SASVTVE 177

Query: 179 AIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL---LTANEMERNILGKSLSI 233
                P        I+ LV AA   +   DV V D+ G     L  ++   +   +    
Sbjct: 178 PEGIAPLSRDRIFQIKDLVRAAFAGMSTDDVVVTDTNGSSAFGLAEDDDPLSRKRREEEE 237

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293
              +       I   L   +G      A   E++         +   D     +    K 
Sbjct: 238 RFEM------KIRNHL---MGYGKIHVATHVEIDPTMSTETASLSYEDQPTTLNETSRKR 288

Query: 294 AQRSETSQPESAVTVEQN-MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
              S    P      + N +      K+        T + E  SN     +   T     
Sbjct: 289 ETESSRPMPGGVPGAQTNALSSNRPVKLDATAQTSKTKEDERTSNRVAGQEYSTTRMAGL 348

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS-- 410
            ++R+ +++ + +    +V  +   +   D  + +I ++ +          D +T+    
Sbjct: 349 PVKRVKVSIGLPRSYYKKVWTKQQLETNPDQTVDDIKQMETT---------DLVTLKEQT 399

Query: 411 ----MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
                  +   L +    +  F  +    +  +    +    T  +    L    +   +
Sbjct: 400 ETEIQQAVTALLPDVAAGEDRFPLVQVWDYIDLPEPEMDSPATAAIALSWLSDSWQTLAM 459

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
                  +            +A  T       + L +    +   +  +++         
Sbjct: 460 LGLAAAALLIARSSVKSLSGNADPTDFKEGFGLELPAPPIAVEEQTEKVEAM--EITGGS 517

Query: 527 SDLRLLHMIEINEERFAKILRKWARS 552
               L+ ++E N E  A ++R W   
Sbjct: 518 LQDELVALVEDNPEVAANVIRSWVGE 543


>gi|51103136|gb|AAT96279.1| HrcJ [Pseudomonas viridiflava]
 gi|51103178|gb|AAT96320.1| HrcJ [Pseudomonas viridiflava]
          Length = 263

 Score =  100 bits (248), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 75/156 (48%), Gaps = 4/156 (2%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108
           L+  L   D N +   L+  NID   R+   G ++ V +  + +A   L A GLP  S +
Sbjct: 27  LHRDLTEQDANEVLAELAGKNIDAQKRLDKGGVAVLVSTQDISRAVRVLEAVGLPRRSRS 86

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           +  ++F K      +   +    + AL  E+ +T+  I G+V ARVH+V+P+  +  +  
Sbjct: 87  TLGQVFRKEGVI-SSPLEERARYIYALSQELEQTLSQIDGVVVARVHVVLPERIAPGEPV 145

Query: 169 ARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLD 203
              +A+V I+        S    IR +VA+++P + 
Sbjct: 146 QPASAAVFIKHRADLEPDSVLPRIRRMVASSIPGMT 181


>gi|269963158|ref|ZP_06177493.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832122|gb|EEZ86246.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 247

 Score = 99.7 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 74/188 (39%), Gaps = 13/188 (6%)

Query: 28  VILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS---DNGSSIS 84
              + ++LF+             LY  +   + N +   L    +        DN   + 
Sbjct: 7   AACMLLVLFLVGC-------QTELYTGVSQKEGNEMLSILLSEGVVATKEPDKDNTVKLM 59

Query: 85  VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144
           V ++ +  A   L  +G P    ++  E+F K +    +   +    + A   E++ T+ 
Sbjct: 60  VDNAQIAFAVDALKRKGYPREQFSTLKEVFPKDD-LISSPLAERARLIYAKSQELSSTLS 118

Query: 145 SISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNL 202
            I G++ ARVH+V+ D      +     +ASV I+        S    I+ LV  ++  L
Sbjct: 119 QIDGVLVARVHVVLEDQNLRPGERPTPASASVFIKHAADVALDSYVPQIKLLVNNSIEGL 178

Query: 203 DMGDVTVL 210
           +   ++V+
Sbjct: 179 NYDRISVV 186


>gi|254228230|ref|ZP_04921659.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio
           sp. Ex25]
 gi|262394115|ref|YP_003285969.1| type III secretion bridge between inner and outermembrane
           lipoprotein (YscJ,HrcJ,EscJ PscJ) [Vibrio sp. Ex25]
 gi|151939303|gb|EDN58132.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio
           sp. Ex25]
 gi|262337709|gb|ACY51504.1| type III secretion bridge between inner and outermembrane
           lipoprotein (YscJ,HrcJ,EscJ PscJ) [Vibrio sp. Ex25]
          Length = 247

 Score = 99.7 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 73/182 (40%), Gaps = 7/182 (3%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS---DNGSSISVPSSMV 90
            +F+    F+       LY  +   + N +   L    +        DN   + V SS +
Sbjct: 7   AVFIMLTLFLVG-CQTELYTNVTQKEGNEMLSILLSEGVVATKEPDKDNTVKLMVDSSQI 65

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   L  +G P    ++  E+F K +    +   +    V A   E++ T+  I G++
Sbjct: 66  AFAVDALKRKGYPREQFSTLKEVFPKDD-LISSPLAERARLVYAKSQELSSTLSQIDGVL 124

Query: 151 AARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVT 208
            ARVH+V+ D      +     +ASV I+        S    I+ LV  ++  L+   ++
Sbjct: 125 VARVHVVLEDQDLRPGERPTPASASVFIKHAADIALDSYVPQIKLLVNNSIEGLNYDRIS 184

Query: 209 VL 210
           V+
Sbjct: 185 VV 186


>gi|91224456|ref|ZP_01259718.1| putative type III secretion lipoprotein [Vibrio alginolyticus
           12G01]
 gi|91190798|gb|EAS77065.1| putative type III secretion lipoprotein [Vibrio alginolyticus
           12G01]
 gi|262284512|gb|ACY41049.1| VscJ [Vibrio alginolyticus]
          Length = 247

 Score = 99.7 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 73/182 (40%), Gaps = 7/182 (3%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS---DNGSSISVPSSMV 90
            +F+    F+       LY  +   + N +   L    +        DN   + V SS +
Sbjct: 7   AVFIMLTLFLVG-CQTELYTNVTQKEGNEMLSILLSEGVVATKEPDKDNTVKLMVDSSQI 65

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   L  +G P    ++  E+F K +    +   +    V A   E++ T+  I G++
Sbjct: 66  AFAVDALKRKGYPREQFSTLKEVFPKDD-LISSPLAERARLVYAKSQELSSTLSQIDGVL 124

Query: 151 AARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVT 208
            ARVH+V+ D      +     +ASV I+        S    I+ LV  ++  L+   ++
Sbjct: 125 VARVHVVLEDQDLRPGERPTPASASVFIKHAADIALDSYVPQIKLLVNNSIEGLNYDRIS 184

Query: 209 VL 210
           V+
Sbjct: 185 VV 186


>gi|34498043|ref|NP_902258.1| type III secretion system apparatus lipoprotein [Chromobacterium
           violaceum ATCC 12472]
 gi|34103898|gb|AAQ60258.1| type III secretion system apparatus lipoprotein [Chromobacterium
           violaceum ATCC 12472]
          Length = 241

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 71/166 (42%), Gaps = 6/166 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLPSS 105
            +LY  L   + N++   L   N+D     I +   ++ V       A   L   GLPS 
Sbjct: 21  VDLYSGLSEDEANQMLALLMLRNVDAEKKIIKEGNVTVRVEKEQFTDAVEVLRQHGLPSK 80

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
            + +  +LF        +   ++       E  + + ++ + G+++A+V I    +   R
Sbjct: 81  RTETMADLFPSGQ-LVTSPAQEQAKIGYLKEQLLEKMLRGMDGVISAQVSIA-ESVSQNR 138

Query: 166 KIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVTVL 210
           +    P+ASV I+       +S E  I+ L+   VPNL   +++V+
Sbjct: 139 REAPAPSASVFIKYSPGINMQSRETDIKRLIHTGVPNLRSENISVV 184


>gi|238918870|ref|YP_002932384.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family,
           [Edwardsiella ictaluri 93-146]
 gi|84663079|gb|ABC60061.1| EsaJ [Edwardsiella ictaluri 93-146]
 gi|238868438|gb|ACR68149.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family,
           putative [Edwardsiella ictaluri 93-146]
          Length = 243

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 68/187 (36%), Gaps = 7/187 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMV 90
           I+LF              LY KL+  + N++   L    I    R+  +G ++ V     
Sbjct: 7   ILLFSMLPLLSGCKS--ELYSKLDEKEANQMMALLIYNKIPADKRMEKDGVTLLVDQDRF 64

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   L   GLP   + +  ELF        +   +E         +I + + S+ G++
Sbjct: 65  VDAVEVLRQNGLPRPQTVTMQELFPSGQ-LVTSPEQEEAKLNYLKSQQIEKMLSSMDGVI 123

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVTV 209
            A V +         +     +A+V I+        + EA IR L+   +P L    ++V
Sbjct: 124 NAEVSVA-EPRAIVGEAPPLASAAVFIKYSPDVNLPAREAEIRALINNGIPGLAPDRISV 182

Query: 210 LDSTGKL 216
                + 
Sbjct: 183 TLQRAEY 189


>gi|291484173|dbj|BAI85248.1| hypothetical protein BSNT_02644 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 323

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/363 (14%), Positives = 121/363 (33%), Gaps = 59/363 (16%)

Query: 210 LDSTGKLLTANEMERNILGKSLSIVQ----AIQHEIEMNINKALAAFLGVDNFRSAVVAE 265
           +D        ++ +      S S  Q     ++ +I+ ++   L   +G D    +V A+
Sbjct: 1   MDQNSTYYDKSDSDAGSYADSYSSQQGIKSQVEKDIQKHVQSLLGTMMGQDKVVVSVTAD 60

Query: 266 LNMDTQQIREIVYDP------DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRK 319
           ++   +   E + +P      +     + ++S+  Q    +   +A T E+++ +     
Sbjct: 61  IDFTKENRTEDIVEPVDKENMEGIAVSAEKVSETYQGDGAANGGTAGTGEEDVTNYKADG 120

Query: 320 VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQG 379
                   N +K   + NYE+N          YK+  L I V+V           S +  
Sbjct: 121 ENTESG--NYEKNSNKINYEVNRIHKEIAESPYKVRDLGIQVMVEPPDAKNTASLSTE-- 176

Query: 380 KIDSYLAEINKIVSAATGINSRRGDTIT---------ITSMDFLENQLFNSGTVQVSFMD 430
           + D     ++ +V  +   +  +   ++         ++   F      ++ T + S + 
Sbjct: 177 RQDEIQKILSTVVRTSLDKDETQNQNLSDADINNKIVVSVQPFDGKVNLDTNTEKSSGIP 236

Query: 431 ILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVT 490
           + +     V+ A + ++  +L+                                      
Sbjct: 237 LWAYIVGGVLIAAIIVLIIMLI-------------------------RKKRAQEDEFEEY 271

Query: 491 TGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
              +P + I L   N++    + +++             +L  M +   E FAK+LR W 
Sbjct: 272 EYEVPQEPINLPDINEEENETAESVR-----------RKQLEKMAKDKPEDFAKLLRSWL 320

Query: 551 RSE 553
             +
Sbjct: 321 AED 323


>gi|269138213|ref|YP_003294913.1| putative type III secretion system apparatus lipoprotein
           [Edwardsiella tarda EIB202]
 gi|61743038|gb|AAX55258.1| EsaJ [Edwardsiella tarda]
 gi|62199640|gb|AAX76915.1| EsaJ [Edwardsiella tarda]
 gi|267983873|gb|ACY83702.1| putative type III secretion system apparatus lipoprotein
           [Edwardsiella tarda EIB202]
 gi|304558256|gb|ADM40920.1| EsaJ [Edwardsiella tarda FL6-60]
          Length = 243

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 69/187 (36%), Gaps = 7/187 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMV 90
           I++F              LY KL+  + N++   L   NI    R+   G ++ V     
Sbjct: 7   ILIFGLLPLLSGCKS--ELYSKLDEKEANQMMALLIYNNIPADKRVEKEGVTLLVERERF 64

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   L   GLP   + +  ELF        +   +E         +I + + S+ G++
Sbjct: 65  VDAVEVLRQNGLPRRKTVTMQELFPSGQ-LVTSPEQEEAKLNYLKSQQIEKMLGSMDGVI 123

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVTV 209
            A V +         +   + +A+V I+        + EA IR L+   +P L    ++V
Sbjct: 124 NAEVSVA-EPRVIVGEAPPQASAAVFIKYSPEINLPAREAEIRALIHNGIPGLAPDRISV 182

Query: 210 LDSTGKL 216
                + 
Sbjct: 183 TLQRAEY 189


>gi|269967253|ref|ZP_06181317.1| putative type III secretion lipoprotein [Vibrio alginolyticus 40B]
 gi|269828109|gb|EEZ82379.1| putative type III secretion lipoprotein [Vibrio alginolyticus 40B]
          Length = 237

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 68/167 (40%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRIS---DNGSSISVPSSMVGKARIHLAAQGLPSS 105
             LY  +   + N +   L    +        DN   + V SS +  A   L  +G P  
Sbjct: 11  TELYTNVTQKEGNEMLSILLSEGVVATKEPDKDNTVKLMVDSSQIAFAVDALKRKGYPRE 70

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS-F 164
             ++  E+F K +    +   +    V A   E++ T+  I G++ ARVH+V+ D     
Sbjct: 71  QFSTLKEVFPKDD-LISSPLAERARLVYAKSQELSSTLSQIDGVLVARVHVVLEDQDLRP 129

Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
            +     +ASV I+        S    I+ LV  ++  L+   ++V+
Sbjct: 130 GERPTPASASVFIKHAADIALDSYVPQIKLLVNNSIEGLNYDRISVV 176


>gi|163802017|ref|ZP_02195913.1| putative type III secretion lipoprotein [Vibrio sp. AND4]
 gi|159174158|gb|EDP58966.1| putative type III secretion lipoprotein [Vibrio sp. AND4]
          Length = 247

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 83/210 (39%), Gaps = 13/210 (6%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRIS---DNGSSISVPSSMVGKARIHLAAQGLPSS 105
             LY  ++  + N +   L    +        DN   + V ++ +  A   L   G P  
Sbjct: 21  TELYTGVDQQEGNEMLSILLSEGVVATKEPDKDNTVKLLVDNAQIAFAVDALKRNGYPKE 80

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS-F 164
             ++  E+F K +    +   +    + A   E++ T+  I G++ ARVH+V+ D     
Sbjct: 81  QFSTLKEVFPKDD-LISSPLAERARLIYAKSQELSSTLSQIDGVLVARVHVVLEDQNLRP 139

Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME 223
            +     +ASV I+        +    I+ LV  ++  L+   ++V+     ++ ++E  
Sbjct: 140 GERPTPASASVFIKHAADVALDAYVPQIKLLVNHSIEGLNYDRISVV-----MVPSSEAR 194

Query: 224 RNILGKSLSIVQAIQHEIEMNINKALAAFL 253
               G     + +IQ  +  +    L A L
Sbjct: 195 ITSQGSQFESILSIQ--VTKDTASHLIAIL 222


>gi|86157134|ref|YP_463919.1| secretory protein YscJ/FliF [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773645|gb|ABC80482.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 239

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 51/171 (29%), Positives = 79/171 (46%), Gaps = 10/171 (5%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRIS-----DNGSSISVPSSMVGKARIHLAAQGLP 103
           + L   L+    N + VAL E  I    +     D G  + V  +   +AR  LA + LP
Sbjct: 20  EALLHGLDEPQANDVLVALDEGGIAAEKAREDGADGGWEVRVAPADAARARRVLAERDLP 79

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
                +G++      S   T+  +    + AL GE+AR+I++I G+V ARVH+ +P    
Sbjct: 80  RQ-RPAGFDAVLAKGSMVPTATEEHAMYLHALSGELARSIEAIDGVVGARVHLGLPQADP 138

Query: 164 FRKIGAR-PTASVMIRAINPSVYKSA---EAIRHLVAAAVPNLDMGDVTVL 210
           FR      P A+V++R    +          +R LVA A   LD G V+V+
Sbjct: 139 FRPGERPAPRAAVLVRCRAAACAAVRALEPGLRALVAGAADGLDAGAVSVV 189


>gi|153832501|ref|ZP_01985168.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio
           harveyi HY01]
 gi|156973996|ref|YP_001444903.1| hypothetical protein VIBHAR_01707 [Vibrio harveyi ATCC BAA-1116]
 gi|148871296|gb|EDL70168.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio
           harveyi HY01]
 gi|156525590|gb|ABU70676.1| hypothetical protein VIBHAR_01707 [Vibrio harveyi ATCC BAA-1116]
          Length = 252

 Score = 97.8 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 68/167 (40%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRIS---DNGSSISVPSSMVGKARIHLAAQGLPSS 105
             LY  +   + N +   L    +        DN   + V ++ +  A   L  +G P  
Sbjct: 26  TELYTGVSQKEGNEMLSILLSEGVVATKEPDKDNTVKLMVDNAQIAFAVDALKRKGYPRE 85

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS-F 164
             ++  E+F K +    +   +    + A   E++ T+  I G++ ARVH+V+ D     
Sbjct: 86  QFSTLKEVFPKDD-LISSPLAERARLIYAKSQELSSTLSQIDGVLVARVHVVLEDQNLRP 144

Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
            +     +ASV I+        S    I+ LV  ++  L+   ++V+
Sbjct: 145 GERPTPASASVFIKHAADVALDSYVPQIKLLVNNSIEGLNYDRISVV 191


>gi|222082184|ref|YP_002541549.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Agrobacterium radiobacter K84]
 gi|221726863|gb|ACM29952.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Agrobacterium radiobacter K84]
          Length = 274

 Score = 97.4 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 45/185 (24%), Positives = 80/185 (43%), Gaps = 6/185 (3%)

Query: 30  LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVP 86
           +  I+  +    F+++   D L   L+  D     V L  A I   ++        I+V 
Sbjct: 21  VAGILSVLVCAAFLSACSEDVL-TGLDQRDARDAQVLLERAGIRATVTGEKGDVFKIAVD 79

Query: 87  SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146
            +   +A   L+  GLP     +  ELF     F +T   Q+     A+E ++  T+ ++
Sbjct: 80  ETDHARAIELLSDAGLPRLPHRTMAELFPGD-GFLVTPLEQKARMTYAVEQQLGETLSAL 138

Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAI-RHLVAAAVPNLDMG 205
            G+ +ARVHIV+P+      I  +  AS +++    +     E   R L+  +V  L   
Sbjct: 139 DGVASARVHIVLPEDNGRGLIKEKARASALLQYRPSANLVDIEMKSRSLLLNSVRGLAYE 198

Query: 206 DVTVL 210
           DV+V+
Sbjct: 199 DVSVV 203


>gi|312883870|ref|ZP_07743587.1| hypothetical protein VIBC2010_01268 [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368328|gb|EFP95863.1| hypothetical protein VIBC2010_01268 [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 247

 Score = 97.4 bits (241), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 68/165 (41%), Gaps = 6/165 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRIS---DNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           LY  ++  + N +   L    +        DN   + V ++ +  A   L   G P    
Sbjct: 23  LYTGVDQKEGNEMLSILLSEGVVASKEPDKDNTVKLMVDNAQIAFAVDVLKRNGYPREQF 82

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS-FRK 166
           ++  ++F K +    +   +    + A   E++ T+  I G++ ARVH+V+ +      +
Sbjct: 83  STLKDVFPKDD-LISSPLAERARLIYAKSQELSATLSQIDGVLVARVHVVLEEEELRPGE 141

Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
                +ASV I+        S    I+ LV  ++  L+   ++V+
Sbjct: 142 RPTPASASVFIKHAADIALDSYVPQIKLLVNNSIEGLNYDRISVV 186


>gi|317486819|ref|ZP_07945635.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Bilophila wadsworthia 3_1_6]
 gi|316921982|gb|EFV43252.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Bilophila wadsworthia 3_1_6]
          Length = 269

 Score = 97.0 bits (240), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 71/166 (42%), Gaps = 5/166 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGLPSS 105
             +Y  L  + VN +   L +  I    +  G    ++SV    + ++   L    LP +
Sbjct: 32  VEVYRGLTEAQVNTMLSTLLKRGIRAEKTAAGKAGFTLSVDEDQLVQSLEILKENNLPRA 91

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
              +  ++F        ++  ++     A+  E++ T   I G++ ARVH+V+       
Sbjct: 92  DYENLGKVF-SGQGMISSASEEQARMAYAISQELSDTFSRIDGVLTARVHVVLGGTDQAT 150

Query: 166 KIGARPTASVMIRAINPS-VYKSAEAIRHLVAAAVPNLDMGDVTVL 210
                P+A+V +R    S V      IR L + AVP+LD   V+V+
Sbjct: 151 DTRTLPSAAVFLRHTPDSPVVNLVAKIRELTSKAVPDLDYERVSVM 196


>gi|269105034|ref|ZP_06157729.1| type III secretion bridge between inner and outermembrane
           lipoprotein (YscJ,HrcJ,EscJ PscJ) [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268160669|gb|EEZ39167.1| type III secretion bridge between inner and outermembrane
           lipoprotein (YscJ,HrcJ,EscJ PscJ) [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 265

 Score = 96.6 bits (239), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 68/165 (41%), Gaps = 6/165 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRIS---DNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           LY  +   + N +   L    +        DN   + V ++ +  A   L  +G P    
Sbjct: 41  LYTGVSQKEGNEMLSVLLSEGVVATKEPDKDNTVKLMVDNAQIAFAIDALKRKGYPREQF 100

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS-FRK 166
           ++  E+F K +    +   +    + A   E++ T+  I G++ ARVH+V+ D      +
Sbjct: 101 STLKEVFPKDD-LISSPLAERARLIYAKSQELSATLSQIDGVLVARVHVVLKDQNLRPGE 159

Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
                +ASV I+        S    I+ LV  ++  L+   ++V+
Sbjct: 160 RPTPASASVFIKHAADVALDSYVPQIKLLVNNSIEGLNYDRISVV 204


>gi|126174186|ref|YP_001050335.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Shewanella baltica OS155]
 gi|125997391|gb|ABN61466.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Shewanella baltica OS155]
          Length = 239

 Score = 96.6 bits (239), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 69/166 (41%), Gaps = 6/166 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDNGSS----ISVPSSMVGKARIHLAAQGLPS 104
            +LY  L   + N++   L   +ID     +  S    + +       A   L   G P 
Sbjct: 20  VDLYRDLPQDEANQMVALLMLNHIDASAEADQKSGNVSLKIEKDQFINAVELLRQNGFPK 79

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
               +  +LF        +   +E       E ++ RT+ S+ G+++ARV I  P   + 
Sbjct: 80  PHYANIEDLFPSGQ-LVTSPAQEEAKMGYLKEQQLERTLSSMDGVISARVSIAEPAPDTG 138

Query: 165 RKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209
           R++    +ASV I+    +   + E  I+ LV  AVP L   +++V
Sbjct: 139 RQLAQTKSASVYIKYSPQANLTNTENQIKSLVQNAVPGLSYDNISV 184


>gi|73532528|dbj|BAE19822.1| flagellar M-ring protein [Edwardsiella tarda]
          Length = 125

 Score = 96.6 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 6/121 (4%)

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
           D  RS                 +S+       S     +++E +NYE++     T     
Sbjct: 2   DKPRSAXGTAGRNTPTPSRSSAISNN--GRLTSRNENIRRDETTNYEVDRTIRHTQARAG 59

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
            +ERLS+AVVVN    T       +       + +IN +V  A G +  RGDT+++ +  
Sbjct: 60  NIERLSVAVVVNYATDTNGK----EIALSQEKMDQINNLVREAMGFSQSRGDTLSVVNTP 115

Query: 413 F 413
           F
Sbjct: 116 F 116


>gi|160875378|ref|YP_001554694.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Shewanella baltica OS195]
 gi|160860900|gb|ABX49434.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Shewanella baltica OS195]
 gi|315267578|gb|ADT94431.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Shewanella baltica OS678]
          Length = 239

 Score = 96.6 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 6/166 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDNGSS----ISVPSSMVGKARIHLAAQGLPS 104
            +LY  L   + N++   L   +ID     +  S    + +       A   L   G P 
Sbjct: 20  VDLYRDLPQDEANQMVALLMLNHIDASAEADQKSGNVSLKIDKDQFINAVELLRQNGFPK 79

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
               +  +LF        +   +E       E ++ RT+ S+ G+++ARV I  P   S 
Sbjct: 80  PHYANIEDLFPSGQ-LVTSPAQEEAKMGYLKEQQLERTLSSMDGVISARVSIAEPAPDSG 138

Query: 165 RKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209
           R+I    +ASV I+    +   + E  I+ LV  AVP L   +++V
Sbjct: 139 RQIALTKSASVYIKYSPQANLTNTENQIKSLVQNAVPGLSYDNISV 184


>gi|218681694|ref|ZP_03529495.1| nodulation protein [Rhizobium etli CIAT 894]
          Length = 268

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/181 (24%), Positives = 82/181 (45%), Gaps = 6/181 (3%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI-SDNGSSISVPSSMVGK 92
              +A   F+ +   D L   L+  D     V L  A I   + S+ G + ++ +     
Sbjct: 25  AAMLALCLFLAACSQDVL-TGLDQRDALDAQVLLERAGISVTMKSEKGGTYAIAAETADH 83

Query: 93  ARI--HLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
           AR    LA  GLP  S  +  ELF   N F +T + Q+     A+E ++A T+  + G+ 
Sbjct: 84  ARAIELLAGAGLPRQSFGNVAELFPG-NGFLVTPYEQKARMSYAIEQQLAETLSGLDGVA 142

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAI-RHLVAAAVPNLDMGDVTV 209
            ARVH+V+P+      I  +  A+ +++    +     +   R ++  ++ +L   DV+V
Sbjct: 143 TARVHVVLPEENGRGLIKEKARAAAVLQYRPGANLNEIDMKSRSVLVNSIRDLSYEDVSV 202

Query: 210 L 210
           +
Sbjct: 203 V 203


>gi|194350707|gb|ACF53784.1| HrcJ [Pectobacterium carotovorum subsp. carotovorum]
          Length = 146

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 4/147 (2%)

Query: 59  DVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
           D N     L    I    R+   G ++ + +  + +A   L A GLP  S  +  E+F K
Sbjct: 1   DANEAISMLGRYQIGAEKRVDKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK 60

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
            +    T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +     +A+V 
Sbjct: 61  -SGVISTPLEERARYIYALSQEVEATLAQIDGVLVARVHVVLPERIAPGEPVQPASAAVF 119

Query: 177 IRAINPSVYKSAEA-IRHLVAAAVPNL 202
           I+          E  IR +VA+++P L
Sbjct: 120 IKYRAELEPDGMEQRIRRMVASSIPGL 146


>gi|194350701|gb|ACF53781.1| HrcJ [Brenneria nigrifluens]
 gi|194350703|gb|ACF53782.1| HrcJ [Brenneria nigrifluens]
 gi|194350705|gb|ACF53783.1| HrcJ [Brenneria alni]
          Length = 146

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 4/147 (2%)

Query: 59  DVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
           D N     L    I    R+   G ++ + +  + +A   L A GLP  S  +  E+F K
Sbjct: 1   DANEAISMLGRYQIGAEKRVDKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK 60

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
            +    T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +     +A+V 
Sbjct: 61  -SGVISTPLEERARYIYALSQEVEATLAQIDGVLVARVHVVLPERIAPGEPVQPASAAVF 119

Query: 177 IRAINPSVYKSAE-AIRHLVAAAVPNL 202
           I+          E  IR +VA+++P L
Sbjct: 120 IKYRAELEPDGMEPRIRRMVASSIPGL 146


>gi|89255318|ref|NP_659983.2| nodulation protein [Rhizobium etli CFN 42]
 gi|89213272|gb|AAM54996.2| nodulation protein [Rhizobium etli CFN 42]
          Length = 273

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/181 (24%), Positives = 82/181 (45%), Gaps = 6/181 (3%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI-SDNGSSISVPSSMVGK 92
              +A   F+ +   D L   L+  D     V L  A I   + S+ G + ++ +     
Sbjct: 22  AAMLAFCLFLAACSQDVL-TGLDQRDALDAQVLLERAGISVTMRSEKGGTYAIAAESADH 80

Query: 93  ARI--HLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
           AR    LA  GLP  S  +  ELF   N F +T + Q+     A+E ++A T+  + G+ 
Sbjct: 81  ARAIELLAGAGLPRQSFGNVAELFPG-NGFLVTPYEQKARMSYAIEQQLAETLSGLDGVA 139

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAI-RHLVAAAVPNLDMGDVTV 209
            ARVH+V+P+      I  +  A+ +++    +     +   R ++  ++ +L   DV+V
Sbjct: 140 TARVHVVLPEENGRGLIKEKARAAAVLQYRPGANLNEIDMKSRSVLVNSIRDLSYEDVSV 199

Query: 210 L 210
           +
Sbjct: 200 V 200


>gi|327192836|gb|EGE59762.1| nodulation protein [Rhizobium etli CNPAF512]
          Length = 250

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 6/179 (3%)

Query: 36  FMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI-SDNGSSISVPSSMVGKAR 94
            +A   F+ +   D L   L+  D     V L  A I   + S+ G + ++ +     AR
Sbjct: 1   MLAFCLFLAACSQDVL-TGLDQRDALDAQVLLERAGISVTMRSEKGGTYAIAAESADHAR 59

Query: 95  I--HLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
               LA  GLP  S  +  ELF   N F +T + Q+     A+E ++A T+  + G+  A
Sbjct: 60  AIELLAGAGLPRQSFGNVAELFPG-NGFLVTPYEQKARMSYAIEQQLAETLSGLDGVATA 118

Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAI-RHLVAAAVPNLDMGDVTVL 210
           RVH+V+P+      I  +  A+ +++    +     +   R ++  ++ +L   DV+V+
Sbjct: 119 RVHVVLPEENGRGLIKEKAKAAAVLQYRPGANLNEIDMKSRSVLVNSIRDLSYEDVSVV 177


>gi|194350717|gb|ACF53789.1| HrcJ [Pectobacterium carotovorum subsp. odoriferum]
          Length = 146

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 4/147 (2%)

Query: 59  DVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
           D N     L    I    R+   G ++ + +  + +A   L A GLP  S  +  E+F K
Sbjct: 1   DANEAISMLGRYQIGAEKRVEKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK 60

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
            +    T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +     +A+V 
Sbjct: 61  -SGVISTPLEERARYIYALSQEVEATLAQIDGVMVARVHVVLPERIAPGEPVQPASAAVF 119

Query: 177 IRAINPSVYKSAE-AIRHLVAAAVPNL 202
           I+          E  IR +VA+++P L
Sbjct: 120 IKYRAELEPDGMEPRIRRMVASSIPGL 146


>gi|218508171|ref|ZP_03506049.1| flagellar MS-ring protein [Rhizobium etli Brasil 5]
          Length = 92

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/93 (52%), Positives = 70/93 (75%), Gaps = 1/93 (1%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           +IL  V  + I + +AA  FVN P  + LYV L+  D+N+IS+AL+EANI+F++  +G+S
Sbjct: 1   MILGGVGALSIAIILAAALFVNKPAQETLYVGLDAPDLNQISMALAEANINFQVGTDGAS 60

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115
           ISVP+ M GKAR+ LA +GLP +S+N+GYELFD
Sbjct: 61  ISVPAGMTGKARLMLAERGLP-NSANAGYELFD 92


>gi|194350689|gb|ACF53775.1| HrcJ [Erwinia rhapontici]
          Length = 146

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 4/147 (2%)

Query: 59  DVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
           D N     L    I    R+   G ++ + +  + +A   L A GLP  S  +  E+F +
Sbjct: 1   DANEAISMLGRYQIGAEKRVEKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVF-Q 59

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
            +    T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +     +A+V 
Sbjct: 60  RSGVISTPLEERARYIYALSQEVEATLAQIDGVMVARVHVVLPERIAPGEPVQPASAAVF 119

Query: 177 IRAINPSVYKSAE-AIRHLVAAAVPNL 202
           I+          E  IR +VA+++P L
Sbjct: 120 IKYRAELEPDGMEPRIRRMVASSIPGL 146


>gi|190894055|ref|YP_001984349.1| nodulation protein [Rhizobium etli CIAT 652]
 gi|190699716|gb|ACE93799.1| nodulation protein [Rhizobium etli CIAT 652]
          Length = 273

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/181 (23%), Positives = 79/181 (43%), Gaps = 6/181 (3%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMV 90
              +A   F+ +   D L   L+  D     V L  A I   +        +I+  ++  
Sbjct: 22  AAMLALCLFLAACSQDVL-TGLDQRDALDAQVLLERAGISVTMKSEKGGTYAITAETADH 80

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
            +A   LA  GLP  S  +  ELF   N F +T + Q+     A E ++A T+  + G+ 
Sbjct: 81  ARAIELLAGAGLPRQSFGNVAELFPG-NGFLVTPYEQKARMSYATEQQLAETLSGLDGVA 139

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAI-RHLVAAAVPNLDMGDVTV 209
            ARVH+V+P+      I  +  A+ +++    +     +   R ++  ++ +L   DV+V
Sbjct: 140 TARVHVVLPEENGRGLIKEKARAAAVLQYRPGANLNEIDMKSRSVLVNSIRDLSYEDVSV 199

Query: 210 L 210
           +
Sbjct: 200 V 200


>gi|304408569|ref|ZP_07390190.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Shewanella baltica OS183]
 gi|307305397|ref|ZP_07585145.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Shewanella baltica BA175]
 gi|304352390|gb|EFM16787.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Shewanella baltica OS183]
 gi|306911700|gb|EFN42125.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Shewanella baltica BA175]
          Length = 239

 Score = 94.7 bits (234), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 68/166 (40%), Gaps = 6/166 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDNGSS----ISVPSSMVGKARIHLAAQGLPS 104
            +LY  L   + N++   L   +ID     +  S    + +       A   L   G P 
Sbjct: 20  VDLYRDLPQDEANQMVALLMLNHIDASAEADQKSGNVSLKIEKDQFINAVELLRQNGFPK 79

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
               +  +LF        +   +E       E ++ RT+ S+ G+++A V I  P   + 
Sbjct: 80  PHYANIEDLFPSGQ-LVTSPAQEEAKMGYLKEQQLERTLSSMDGVISASVSIAEPAPDTG 138

Query: 165 RKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209
           R++    +ASV I+    +   + E  I+ LV  AVP L   +++V
Sbjct: 139 RQLAQTKSASVYIKYSPQANLTNTENQIKSLVQNAVPGLSYDNISV 184


>gi|312881276|ref|ZP_07741074.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309371168|gb|EFP98622.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 240

 Score = 94.7 bits (234), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 70/166 (42%), Gaps = 8/166 (4%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF--RISDNGS--SISVPSSMVGKARIHLAAQGLPSSS 106
           LY  L  ++ N++   L   +ID    +       ++ +       A   L   G P + 
Sbjct: 22  LYQNLPQAEANQMVALLMLNHIDASSEMDAKTGKVTLKIEKDQFINAVELLRQNGYPKAE 81

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
              G E          +   +E       E ++ RT+ ++ G+++ARV I   D  +   
Sbjct: 82  Y-VGIEQLFPSGQLVSSPAQEEAKMSYLKEQQLERTLSNMDGVISARVSIAQNDSSASSS 140

Query: 167 IG--ARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVTV 209
                + +ASV I+    +   ++E+ IR+L+  AVP+L   ++++
Sbjct: 141 HQTPDQKSASVYIKYSPEANLGNSESQIRNLIKNAVPDLSYENISL 186


>gi|167567520|ref|ZP_02360436.1| type III secretion system apparatus lipoprotein [Burkholderia
           oklahomensis EO147]
          Length = 224

 Score = 93.9 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 69/164 (42%), Gaps = 6/164 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           LY  L  ++ N++   L   +I      + D   +I V S     A   +   GLP    
Sbjct: 25  LYTNLPEAEANQMIALLMLRDIAVDKKPLKDGNVTIRVESDQFVNAVELMRQNGLPRRKL 84

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
            +  +LF        +   ++       E ++ + ++++ G+V A+V I   +  + R+ 
Sbjct: 85  AALEDLFPPGQ-LVTSPAQEQAKITFLKEQQLEKMLRAMDGVVDAQVSIAEAEPQN-RRD 142

Query: 168 GARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVTVL 210
             +P+ASV ++      + + E  IR LV    P L    V+V+
Sbjct: 143 PPQPSASVFVKYSPERNFGARETEIRSLVVTGTPGLSPDHVSVV 186


>gi|325109012|ref|YP_004270080.1| secretory protein YscJ/FliF family protein [Planctomyces
           brasiliensis DSM 5305]
 gi|324969280|gb|ADY60058.1| secretory protein YscJ/FliF family protein [Planctomyces
           brasiliensis DSM 5305]
          Length = 540

 Score = 93.9 bits (232), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 101/586 (17%), Positives = 182/586 (31%), Gaps = 82/586 (13%)

Query: 1   MAILDQ-LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLE-- 56
           M I  Q   QF +   ++  ++  +LA+V ++ +  F    +       Y  + V     
Sbjct: 1   MDIFKQTFTQFRELFLAMPASQRAMLATVTVLLLGGFGYLMYRGTGNGGYVPVSVGKSFR 60

Query: 57  VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG-LPSSSSNSGYELFD 115
           V ++ R    L +          G  + VPSS V +    L A G LP + +    + + 
Sbjct: 61  VEELIRAEETLLQNGYT-DFERRGQRLLVPSSKVEEYNAALLAAGSLPQNWAEEWEKQYS 119

Query: 116 KVNSFGLTSFMQEITRVRALEGEIART------IQSISGIVAARVHIVMPDMGSFRKIGA 169
            +  F     M E         EIAR       + ++  I  A V     +   +     
Sbjct: 120 DIGPFANNKQMDERK-------EIARAKLASQMLLALPDIEYANVVWDQEEKARW-PKQP 171

Query: 170 RPTASVMIRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLD-STGKLLTANEMERNI 226
           R TA+V ++             A+R  +A    NL   DVTVLD   G      +     
Sbjct: 172 RSTATVSVQPRANKQLDETLVHAVRVSIAGMKANLSAEDVTVLDLGRGIAYQQADDNDPF 231

Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR-EIVYDPDSKVE 285
             + L  +Q ++      +   L A   +D+ R AV  +++     IR     +      
Sbjct: 232 NDRLLQRIQQLKDMYRDEV---LTAIDYIDSVRVAVKVDIDKVKSAIRRSQSVETTGTTL 288

Query: 286 RSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSI 345
            SI  S     S   Q         N P     +    +S ++T+ KE       + +  
Sbjct: 289 VSINES-SKHNSNRFQTAKEPGQNANGPMNLAGQQTPTQSADSTETKESSLT-APSFQVT 346

Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA---------- 395
                    E +S++VV+ +     V  +S  Q   D+   +I   V             
Sbjct: 347 QEDVAGALPENVSVSVVIPEQYYRTVALQSG-QVAPDATEEDIRAAVQKVRPDVDDAVKA 405

Query: 396 ---------TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFL 446
                     G N    D I + +         +   V + +   LS       +A+   
Sbjct: 406 RVAKIIPIPVGQNVD--DYIDVGAF---IPSPTSETIVSIPWTQTLSYWITQWGSAVGLG 460

Query: 447 VGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQ 506
           +  L   ++    +R     +         +   +           LMP  +        
Sbjct: 461 IFALWAFWMLNKTVR--SQTETEIPEPEPEQVEEAKSEEEEFSDEDLMPQGD-------- 510

Query: 507 DIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
                              +    L ++++ N E  A I+  W + 
Sbjct: 511 ------------------TKRVDHLQYLVKKNPEMTASIISNWIQE 538


>gi|1772456|dbj|BAA14027.1| FliF [Shigella boydii]
          Length = 220

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 80/202 (39%), Gaps = 23/202 (11%)

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           ++RLS+AVVVN   L +           +  + +I  +   A G + +RGD++ + +  F
Sbjct: 42  VQRLSVAVVVNYKTLPDGKPL----PLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 97

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
             +   +    ++ F    +     ++ A  +L+  L+   L   A+R       A+  +
Sbjct: 98  NSS---DESGGELPFWQQQA-FIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRR-AEAMK 152

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
              +   +   +  AV   L  ++ +    +NQ + +   +               R+  
Sbjct: 153 AVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQRLGTEVMS--------------QRIRE 198

Query: 534 MIEINEERFAKILRKWARSEIE 555
           M + +    A ++R+W  ++ E
Sbjct: 199 MSDNDPRVVALVIRQWINNDHE 220


>gi|218458744|ref|ZP_03498835.1| nodulation protein [Rhizobium etli Kim 5]
          Length = 246

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 75/162 (46%), Gaps = 5/162 (3%)

Query: 53  VKLEVSDVNRISVALSEANIDFRI-SDNGSSISVPSSMVGKARI--HLAAQGLPSSSSNS 109
             L+  D     V L  A I   + S+ G + ++ +     AR    LA  GLP  S  +
Sbjct: 13  TGLDQRDALDAQVLLERAGISVTMRSEKGGTYAIAAESADHARAIELLAGAGLPRQSFEN 72

Query: 110 GYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA 169
             ELF   N F +T + Q+     A+E ++A T+  + G+  ARVH+V+P+      I  
Sbjct: 73  VAELFPG-NGFLVTPYEQKARMSYAIEQQLAETLSGLDGVATARVHVVLPEENGRGLIKE 131

Query: 170 RPTASVMIRAINPSVYKSAEAI-RHLVAAAVPNLDMGDVTVL 210
           +  A+ +++    +     +   R ++  ++ +L   DV+V+
Sbjct: 132 KARAAAVLQYRPGANLNEIDMKSRSVLVNSIRDLSYEDVSVV 173


>gi|167574399|ref|ZP_02367273.1| type III secretion system apparatus lipoprotein [Burkholderia
           oklahomensis C6786]
          Length = 249

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 69/164 (42%), Gaps = 6/164 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           LY  L  ++ N++   L   +I      + D   +I V S     A   +   GLP    
Sbjct: 25  LYTNLPEAEANQMIALLMLRDIAVDKKPLKDGNVTIRVESDQFVNAVELMRQNGLPRRKL 84

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
            +  +LF        +   ++       E ++ + ++++ G+V A+V I   +  + R+ 
Sbjct: 85  AALEDLFPPGQ-LVTSPAQEQAKITFLKEQQLEKMLRAMDGVVDAQVSIAEAEPQN-RRD 142

Query: 168 GARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVTVL 210
             +P+ASV ++      + + E  IR LV    P L    V+V+
Sbjct: 143 PPQPSASVFVKYSPERNFGARETEIRSLVVTGTPGLSPDHVSVV 186


>gi|238752365|ref|ZP_04613843.1| Type III secretion system apparatus lipoprotein [Yersinia rohdei
           ATCC 43380]
 gi|238709406|gb|EEQ01646.1| Type III secretion system apparatus lipoprotein [Yersinia rohdei
           ATCC 43380]
          Length = 236

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 65/188 (34%), Gaps = 6/188 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDN-GSSI--SVPSSMVGKARIHLAAQGLPSSSS 107
           LY  L   + N++   L    I        G ++  SV  S    A   L   G P    
Sbjct: 17  LYSGLSEEEANQMLALLMLHQIKAEKQAEKGGTVGLSVDKSQFINAVELLRQNGFPRQKF 76

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
            +  ELF        +   ++   V   E ++   +  + G++ A V I MP      K 
Sbjct: 77  ATVDELFPSNQ-LVTSPGQEQAKMVYLKEQQLESMLSHMDGVIRANVSIAMPAPTD-GKN 134

Query: 168 GARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI 226
                ASV I+        S +  I++L+   +P ++   ++V+  +     +       
Sbjct: 135 SVPNAASVFIKYSPEVNLLSYQTQIKNLIHDGIPGINYSQISVVMQSANFRFSATTATTQ 194

Query: 227 LGKSLSIV 234
                S+ 
Sbjct: 195 SRSQASVQ 202


>gi|260778625|ref|ZP_05887517.1| type III secretion apparatus lipoprotein YscJ/HrcJ family [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260604789|gb|EEX31084.1| type III secretion apparatus lipoprotein YscJ/HrcJ family [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 242

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 70/168 (41%), Gaps = 8/168 (4%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDNGSS----ISVPSSMVGKARIHLAAQGLPS 104
             LY  L  S+ N++   L   +ID     +  +    + +       A   L   G P 
Sbjct: 20  VELYQNLPQSEANQMVALLMLNHIDASSETDAKTGKVTLKIEKDQFINAVELLRQNGYPK 79

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           +    G E          +   ++       E ++ RT+ S+ G+++ARV I   D  + 
Sbjct: 80  AEY-VGIEQLFPSGQLVSSPAQEDAKMSYLKEQQLERTLSSMDGVISARVSIAQSDKSTN 138

Query: 165 RKIGARP--TASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVTV 209
               A    +A+V I+    +   ++E+ IR+L+  AVP+L   ++++
Sbjct: 139 TGRAAPSEKSAAVYIKYSPEANLGNSESQIRNLIKNAVPDLQYENISL 186


>gi|194350681|gb|ACF53771.1| HrcJ [Erwinia amylovora]
          Length = 120

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 2/121 (1%)

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           + V ++ + +A   L A GLP  +  +  E+F K N    T   +    + AL  E+  T
Sbjct: 1   VLVDAAELNRAVHILDAAGLPRPARTNLGEVFQK-NGVISTPLEERARYIYALSQEVEST 59

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPN 201
           +  I G++ ARVH+V+P+  +  +     +A+V I+          E  IR +VA+++P 
Sbjct: 60  LSQIDGVIVARVHVVLPERIAPGEPVQPASAAVFIKYRPDLDPDVIEPRIRRMVASSLPG 119

Query: 202 L 202
           L
Sbjct: 120 L 120


>gi|194350687|gb|ACF53774.1| HrcJ [Erwinia rhapontici]
          Length = 144

 Score = 91.6 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 2/129 (1%)

Query: 75  RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134
           R+   G ++ + +  + +A   L A GLP  S  +  E+F K +    T   +    + A
Sbjct: 17  RVEKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK-SGVISTPLEERARYIYA 75

Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRH 193
           L  E+  T+  I G++ ARVH+V+P+  +  +     +A+V I+          E  IR 
Sbjct: 76  LSQEVEATLAQIDGVMVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGMEPRIRR 135

Query: 194 LVAAAVPNL 202
           +VA+++P L
Sbjct: 136 MVASSIPGL 144


>gi|213613043|ref|ZP_03370869.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 161

 Score = 91.6 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 65/177 (36%), Gaps = 19/177 (10%)

Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFAT 438
                 + +I  +   A G + +RGDT+ + +  F      ++   ++ F    S     
Sbjct: 4   PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDNTGGELPFWQQQS-FIDQ 59

Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498
           ++ A  +L+  ++   L   A+         ++ +   +          AV   L  ++ 
Sbjct: 60  LLAAGRWLLVLVVAWILWRKAVHPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRLSKDEQ 118

Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           +    +NQ           R+ + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 119 LQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSNDHE 161


>gi|194350709|gb|ACF53785.1| HrcJ [Pectobacterium carotovorum subsp. carotovorum]
          Length = 143

 Score = 91.6 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 2/129 (1%)

Query: 75  RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134
           R+   G ++ + +  + +A   L A GLP  S  +  E+F K +    T   +    + A
Sbjct: 16  RVDKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK-SGVISTPLEERARYIYA 74

Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRH 193
           L  E+  T+  I G++ ARVH+V+P+  +  +     +A+V I+          E  IR 
Sbjct: 75  LSQEVEATLAQIDGVLVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGMEQRIRR 134

Query: 194 LVAAAVPNL 202
           +VA+++P L
Sbjct: 135 MVASSIPGL 143


>gi|213855154|ref|ZP_03383394.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 160

 Score = 91.6 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 65/177 (36%), Gaps = 19/177 (10%)

Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFAT 438
                 + +I  +   A G + +RGDT+ + +  F      ++   ++ F    S     
Sbjct: 3   PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDNTGGELPFWQQQS-FIDQ 58

Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498
           ++ A  +L+  ++   L   A+         ++ +   +          AV   L  ++ 
Sbjct: 59  LLAAGRWLLVLVVAWILWRKAVHPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRLSKDEQ 117

Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           +    +NQ           R+ + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 118 LQQRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSNDHE 160


>gi|194350715|gb|ACF53788.1| HrcJ [Pectobacterium atrosepticum SCRI1043]
          Length = 133

 Score = 91.2 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 2/129 (1%)

Query: 75  RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134
           R+   G ++ + +  + +A   L A GLP  S  +  E+F K +    T   +    + A
Sbjct: 6   RVDKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK-SGVISTPLEERARYIYA 64

Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRH 193
           L  E+  T+  I G++ ARVH+V+P+  +  +     +A+V I+          E  IR 
Sbjct: 65  LSQEVEATLAQIDGVLVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGMEQRIRR 124

Query: 194 LVAAAVPNL 202
           +VA+++P L
Sbjct: 125 MVASSIPGL 133


>gi|238787467|ref|ZP_04631265.1| Type III secretion system apparatus lipoprotein [Yersinia
           frederiksenii ATCC 33641]
 gi|238724254|gb|EEQ15896.1| Type III secretion system apparatus lipoprotein [Yersinia
           frederiksenii ATCC 33641]
          Length = 240

 Score = 91.2 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 75/219 (34%), Gaps = 18/219 (8%)

Query: 20  TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN 79
            R++ L  ++       +A            LY  L   + N++   L    I       
Sbjct: 2   QRMIALLLIVFSLSGCGIA------------LYSGLSEGEANQMLALLMLHQIKAEKQPE 49

Query: 80  -GSSI--SVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136
            G ++  SV  S    A   L   G P     S  ELF        +   ++   V   E
Sbjct: 50  KGGTVGLSVDKSQFINAVELLRQHGFPRQRFTSVDELFPPNQ-LVTSPGQEQAKMVYLKE 108

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLV 195
            ++   +  + G++ A V I MP      K      ASV I+        S ++ I++L+
Sbjct: 109 QQLESMLSHMDGVIRADVTIAMPAPTD-GKSSVPHAASVFIKYSPEVNLLSYQSQIKNLI 167

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIV 234
              +P +D   ++V+        +    +     + S+ 
Sbjct: 168 RDGIPGIDYSQISVVMQPANYRFSASAPQQPSHAAASLQ 206


>gi|108759625|ref|YP_633790.1| YscJ/FliF family type III secretion lipoprotein [Myxococcus xanthus
           DK 1622]
 gi|108463505|gb|ABF88690.1| type III secretion lipoprotein, YscJ/FliF family [Myxococcus
           xanthus DK 1622]
          Length = 267

 Score = 90.9 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 9/165 (5%)

Query: 54  KLEVSDVNRISVALSEANIDFRISDN-----GSSISVPSSMVGKARIHLAAQGLPSSSSN 108
            L+    N +   L E  +D R           SI V       A   L+  GLP     
Sbjct: 27  GLDERQANELQSVLVERGLDARKVPEAGKKPTWSIEVADEHASDAVRILSELGLPRPKEE 86

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
            G ++F        T   + + RVR +E  + +T+QS+ G++ ARVH+V+P      +  
Sbjct: 87  VGCDVFGG-GGLVRTPVEESVCRVRVMERSLEKTLQSVEGVLLARVHLVVPAPPRVGQAP 145

Query: 169 ARPTASVMIRAINP---SVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
               AS M+R        V +S+E ++ L+A  V  L    V++L
Sbjct: 146 GPSKASAMLRVAPGNAARVRQSSETLKVLLAGGVEGLSPEAVSLL 190


>gi|284007036|emb|CBA72311.1| type III secretion system apparatus lipoprotein EscJ,SsaJ
           [Arsenophonus nasoniae]
          Length = 234

 Score = 90.9 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 63/168 (37%), Gaps = 8/168 (4%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDNGSS----ISVPSSMVGKARIHLAAQGLPS 104
             LY  L   + N++   L   +ID     +G +    + +       A   L   G P 
Sbjct: 10  VELYRNLPQDEANQMVALLMLNHIDVNSEIDGKTGKVTLQIEKDKFIDAVEILRQNGYPK 69

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM--PDMG 162
           +      +LF        +   +E       E ++ RT+ S+ G+++ARV I        
Sbjct: 70  TQYVGIEDLFPAGQ-LVSSPAQEEAKMRYLKEQQLERTLSSMDGVISARVSIAQADNSES 128

Query: 163 SFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVTV 209
           +     A  + +V I+          EA IR+L+  A+  L    +++
Sbjct: 129 NIDNTTAEKSVAVYIKYSPEVNMNGVEAQIRNLIKNAISGLQSDKISL 176


>gi|194350711|gb|ACF53786.1| HrcJ [Pectobacterium carotovorum subsp. brasiliensis]
          Length = 128

 Score = 90.5 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 2/129 (1%)

Query: 75  RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134
           R+   G ++ + +  + +A   L A GLP  S  +  E+F K +    T   +    + A
Sbjct: 1   RVEKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK-SGVISTPLEERARYIYA 59

Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRH 193
           L  E+  T+  I G++ ARVH+V+P+  +  +     +A+V I+          E  IR 
Sbjct: 60  LSQEVEATLAQIDGVLVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGMEQRIRR 119

Query: 194 LVAAAVPNL 202
           +VA+++P L
Sbjct: 120 MVASSIPGL 128


>gi|238785747|ref|ZP_04629720.1| Type III secretion system apparatus lipoprotein [Yersinia
           bercovieri ATCC 43970]
 gi|238713330|gb|EEQ05369.1| Type III secretion system apparatus lipoprotein [Yersinia
           bercovieri ATCC 43970]
          Length = 236

 Score = 90.1 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 69/187 (36%), Gaps = 7/187 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGLPSSSS 107
           LY  L   + N++   L    I      +     S+SV  +    A   L   G P    
Sbjct: 18  LYSGLSEGEANQMLALLMLHQIKAEKQSDKGGAVSLSVDKNQFINAVELLRQNGFPRQQF 77

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
            +  ELF        +   ++   V   E ++   +  + G++ A V I MP      K 
Sbjct: 78  TTVDELFPSNQ-LVTSPGQEQAKMVYLKEQQLESMLSHMDGVIHADVTIAMPAPTD-GKS 135

Query: 168 GARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVLDSTGKL-LTANEMERN 225
                ASV I+          +  I++L+  AVP +D   ++V+        +A    ++
Sbjct: 136 SVPHAASVFIKYSPEVNLLIYQPQIKNLIRDAVPGIDYAQISVVMQPANYRFSATPPAQS 195

Query: 226 ILGKSLS 232
            +G+ L 
Sbjct: 196 GMGRGLQ 202


>gi|238793326|ref|ZP_04636952.1| Type III secretion system apparatus lipoprotein [Yersinia
           intermedia ATCC 29909]
 gi|238727295|gb|EEQ18823.1| Type III secretion system apparatus lipoprotein [Yersinia
           intermedia ATCC 29909]
          Length = 233

 Score = 90.1 bits (222), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 66/188 (35%), Gaps = 6/188 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRI-SDNGSSI--SVPSSMVGKARIHLAAQGLPSSSS 107
           LY  L   + N++   L    I     S+ G ++  SV  S    A   L   G P    
Sbjct: 14  LYSGLSEGEANQMLALLMLHQIKAEKQSEKGGTVGLSVDKSQFINAVELLRQNGFPRQKF 73

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
            +   LF        +   ++   V   E ++   +  + G++ A V I MP      K 
Sbjct: 74  TTVDTLFPSNQ-LVTSPGQEQAKMVYLKEQQLESMLSHMDGVIHADVTIAMPAPTD-GKS 131

Query: 168 GARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI 226
                ASV I+       +S +  I++L+   +P +D   ++V+                
Sbjct: 132 SVPHAASVFIKYSPEVNLQSYQPQIKNLIRDGIPGIDYSQISVVMQPANYRFIAAEPHEH 191

Query: 227 LGKSLSIV 234
               LS+ 
Sbjct: 192 AEAQLSLQ 199


>gi|330899426|gb|EGH30845.1| flagellar MS-ring protein [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 139

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 63/160 (39%), Gaps = 27/160 (16%)

Query: 401 RRGDTITITSMDFLENQLFNSGTV----QVSFMDILSRHFATVINALVFLVGTLLVTFLG 456
            RGD++++ ++ F   +           Q  F DI+ +            VG + +  L 
Sbjct: 1   SRGDSVSVINVPFSSERAEVLPEASFYSQPWFWDIVKQ-----------AVGVIFILILV 49

Query: 457 LHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF-SHSRN 514
              LR  L+NI + K+ E+ G               G + ND ++L      +  S +  
Sbjct: 50  FGVLRPVLNNITNGKRKELAGFGG-DAELGGMGGLDGELSNDRVSLGGPQSILLPSPTEG 108

Query: 515 LQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
             +++N+         +  ++  +  R A+++++W  ++ 
Sbjct: 109 YDAQLNA---------IKSLVAEDPGRVAQVVKEWINTDE 139


>gi|115377828|ref|ZP_01465016.1| bcscJ [Stigmatella aurantiaca DW4/3-1]
 gi|310820299|ref|YP_003952657.1| type III secretion apparatus lipoprotein, yscj/hrcj family
           [Stigmatella aurantiaca DW4/3-1]
 gi|115365160|gb|EAU64207.1| bcscJ [Stigmatella aurantiaca DW4/3-1]
 gi|309393371|gb|ADO70830.1| Type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Stigmatella aurantiaca DW4/3-1]
          Length = 269

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 70/168 (41%), Gaps = 13/168 (7%)

Query: 54  KLEVSDVNRISVALSEANIDF-RISDNGS-----SISVPSSMVGKARIHLAAQGLPSSSS 107
            L   D N I V LS+  I   ++ +        SI VP +   +A   L A  LP    
Sbjct: 28  GLTEQDANEIYVLLSKNGISAVKLKEGEGQDVQFSIQVPKADAAQAAELLRANSLPRPME 87

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
                      S   T+  +    ++A+ GE++  +  I G++ + V + +P+     + 
Sbjct: 88  KGFNHF--AKGSMVPTAAEERAMMLKAIAGEVSNALNKIDGVLESNVIVNIPENNDLTQP 145

Query: 168 GAR--PTASVMIR---AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
             +  P+ASVMIR   ++          ++  VA+AV  L    VTVL
Sbjct: 146 ENKPMPSASVMIRYRPSLEGKAPVEEPQVKQFVASAVQELKPEAVTVL 193


>gi|213028051|ref|ZP_03342498.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 156

 Score = 89.3 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 65/175 (37%), Gaps = 19/175 (10%)

Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440
               + +I  +   A G + +RGDT+ + +  F      ++   ++ F    S     ++
Sbjct: 1   TADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF---SAVDNTGGELPFWQQQS-FIDQLL 56

Query: 441 NALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIA 500
            A  +L+  ++   L   A+         ++ +   +          AV   L  ++ + 
Sbjct: 57  AAGRWLLVLVVAWILWRKAVHPQLTRR-VEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQ 115

Query: 501 LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
              +NQ           R+ + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 116 QRRANQ-----------RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSNDHE 156


>gi|332159951|ref|YP_004296528.1| type III secretion system apparatus lipoprotein [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|318607497|emb|CBY28995.1| secretion system apparatus SsaJ [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325664181|gb|ADZ40825.1| Type III secretion system apparatus lipoprotein [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330862423|emb|CBX72582.1| secretion system apparatus lipoprotein ssaJ [Yersinia
           enterocolitica W22703]
          Length = 243

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 73/206 (35%), Gaps = 7/206 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI-SDNGSSIS--VPSSM 89
           +M  +     ++    + LY  L   + N++   L    I     S+ G +++  V  S 
Sbjct: 7   LMALLLVVMSLSGCGME-LYSGLSEGEANQMLALLMLHQIKAEKQSEKGGTVALNVDKSQ 65

Query: 90  VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149
              A   L   G P     S  ELF        +   ++   V   E ++   +  + G+
Sbjct: 66  FINAVELLRQHGFPRQRFASVDELFPSNQ-LVTSPGQEQAKMVYLKEQQLESMLSHMDGV 124

Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVT 208
           + A V I MP      K      ASV I+        S +  I++L+   +P +D   ++
Sbjct: 125 IQADVTIAMPAPTD-GKSSVPHAASVFIKYSPEVNLLSYQPQIKNLIRDGIPGIDFSQIS 183

Query: 209 VLDSTGKLLTANEMERNILGKSLSIV 234
           V+        +    +       ++ 
Sbjct: 184 VVMQPTNYRFSAPATQQQSHSEAALQ 209


>gi|167464169|ref|ZP_02329258.1| flagellar MS-ring protein [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 272

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/310 (15%), Positives = 107/310 (34%), Gaps = 41/310 (13%)

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYD-PDSKVERSIRLS-KDAQRSETSQPES 304
             LA   G +     VV+ +N D ++ +E +   P+   ++ + +S ++ Q+S +S   +
Sbjct: 1   NLLAPMYGQNKVVVNVVSTMNFDQKKTKEQLVSAPNQDEQKGLEISVQELQKSASSDGAT 60

Query: 305 AVTVE-QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
           A  V       V   +         +++ ++  NYE+N  +       Y ++ L+I V +
Sbjct: 61  AGGVAGSGTNDVPGYESTSNSGNSKSEENQKTVNYEVNRITNDIIRAPYVVKDLNITVAI 120

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           +   +    G+  +   +++ +  I K   A +G+   + D         ++ ++     
Sbjct: 121 DTKSVNGNPGKIENAELLENAMKGIVKTALADSGVEYEQAD---------IDKKVTIIPK 171

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
              S     + +    +      +  L +    + ALRR                     
Sbjct: 172 ELQSPSSTTASNLNNYLLYGGIGLAALALIAGTVFALRRRKK------------------ 213

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
                     +      ++    DI + + + Q R           +L  + +   E F 
Sbjct: 214 -NLLEEEEEYITTGQQQVEYPTIDIENVTNDNQVR----------KQLETLAKKKPEEFV 262

Query: 544 KILRKWARSE 553
            +LR W   E
Sbjct: 263 NLLRTWLVDE 272


>gi|193061969|ref|ZP_03043065.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli E22]
 gi|194426282|ref|ZP_03058837.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli B171]
 gi|260845702|ref|YP_003223480.1| T3SS structure protein EscJ [Escherichia coli O103:H2 str. 12009]
 gi|260858257|ref|YP_003232148.1| T3SS structure protein EscJ [Escherichia coli O26:H11 str. 11368]
 gi|13447711|gb|AAK26710.1|AF200363_18 EscJ [Escherichia coli]
 gi|18034515|gb|AAL57537.1|AF453441_21 EscJ [Escherichia coli]
 gi|17384645|emb|CAC81857.1| EscJ protein [Escherichia coli]
 gi|57434462|emb|CAI43879.1| EscJ protein [Escherichia coli]
 gi|192932189|gb|EDV84787.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli E22]
 gi|194415590|gb|EDX31857.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli B171]
 gi|195183203|dbj|BAG66748.1| T3SS structure protein EscJ [Escherichia coli O111:H-]
 gi|254692335|emb|CAR47976.1| EscJ protein [Escherichia coli]
 gi|254692403|emb|CAR48046.1| EscJ protein [Escherichia coli]
 gi|257756906|dbj|BAI28408.1| T3SS structure protein EscJ [Escherichia coli O26:H11 str. 11368]
 gi|257760849|dbj|BAI32346.1| T3SS structure protein EscJ [Escherichia coli O103:H2 str. 12009]
 gi|323153823|gb|EFZ40065.1| hypothetical protein ECEPECA14_4272 [Escherichia coli EPECa14]
 gi|323163015|gb|EFZ48848.1| hypothetical protein ECE128010_0611 [Escherichia coli E128010]
          Length = 190

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 67/164 (40%), Gaps = 10/164 (6%)

Query: 51  LYVKLEVSDVNRISVALSEA--NIDFRISDNGS-SISVPSSMVGKARIHLAAQGLPSSSS 107
           LY  L   + N++   L     N+   +  +G+ +ISV      +A   L   G P    
Sbjct: 24  LYTGLTEKEANQMQALLLSNDVNVSKEMDKSGNVTISVEKEDFVRAITILNNNGFPKKKF 83

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
            +  E+    +    +   +        E +I R +  I G++   V + + +       
Sbjct: 84  -ADIEVIFPPSQLVASPSQENAKINYLKEQDIERLLSKIPGVIDCSVSLNVNNN-----E 137

Query: 168 GARPTASVMIRAINP-SVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
               +A+V++ +    ++  S   I++LV  +V +L + +++V+
Sbjct: 138 SQPSSAAVLVISSPEVNLAPSVIQIKNLVKNSVDDLKLENISVV 181


>gi|170766695|ref|ZP_02901148.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia albertii TW07627]
 gi|170124133|gb|EDS93064.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia albertii TW07627]
 gi|315617523|gb|EFU98129.1| conserved hypothetical protein [Escherichia coli 3431]
          Length = 190

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 76/186 (40%), Gaps = 18/186 (9%)

Query: 29  ILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA--NIDFRISDNGS-SISV 85
           +LV I L +A +        + LY  L   + N++   L     N+   +  +G+ +ISV
Sbjct: 10  LLVAICLTVACK--------EQLYTGLTEKEANQMQALLLSNDVNVSKEMDKSGNVTISV 61

Query: 86  PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145
                 +A   L   G P     +  E+    +    +   +        E +I R +  
Sbjct: 62  EKEDFVRAITILNNNGFPKKKF-ADIEVIFPPSQLVASPSQENAKINYLKEQDIERLLSK 120

Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP-SVYKSAEAIRHLVAAAVPNLDM 204
           I G++   V + + +           +A+V++ +    ++  S   I++LV  +V +L +
Sbjct: 121 IPGVIDCSVSLNVNNN-----ESQPSSAAVLVISSPEVNLAPSVIQIKNLVKNSVDDLKL 175

Query: 205 GDVTVL 210
            +++V+
Sbjct: 176 ENISVV 181


>gi|7025353|gb|AAF35844.1|AF220002_1 flagellar M ring protein FliF [Rhodospirillum centenum]
          Length = 132

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           F ++      LY  L+ ++  RI   L    + +++S  G +I +P   + + R+ LA Q
Sbjct: 19  FGLSRAPMGLLYAGLDDAEAGRILTQLQSMKVPYQVSGTGGAILLPQDQIARTRMLLAQQ 78

Query: 101 GLPSSSSNSGYELFDKVNS 119
           GLPS+   +GYELFD+  +
Sbjct: 79  GLPSAGG-AGYELFDEQGA 96


>gi|310823558|ref|YP_003955916.1| type III secretion lipoprotein, yscj/flif family [Stigmatella
           aurantiaca DW4/3-1]
 gi|309396630|gb|ADO74089.1| Type III secretion lipoprotein, YscJ/FliF family [Stigmatella
           aurantiaca DW4/3-1]
          Length = 267

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 9/165 (5%)

Query: 54  KLEVSDVNRISVALSEANIDFRISDN-----GSSISVPSSMVGKARIHLAAQGLPSSSSN 108
            L+    N +   L E  ++ R           SI V  +    A   LA  GLP   + 
Sbjct: 27  GLDERQANELQTVLLERGLEARKVPEAGKKPSWSIEVDEAQASAAVRILAELGLPRPVAE 86

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           +G ++F    +   T   +++ R R LE  I +T+Q + G++ ARVH+++P         
Sbjct: 87  TGCDVFGG-GALLRTPIEEQLCRTRVLERGIEKTLQGMEGVLVARVHLMVPPPARPGHAP 145

Query: 169 ARPTASVMIRAINP---SVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
           +   AS ++R  +     + +S + ++ L+A  V  L    V++L
Sbjct: 146 SAAKASALLRTASGQADRLRQSQDRLQALIAGGVEGLSPEAVSLL 190


>gi|193070396|ref|ZP_03051338.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli E110019]
 gi|192956335|gb|EDV86796.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli E110019]
          Length = 190

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 73/180 (40%), Gaps = 10/180 (5%)

Query: 35  LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA--NIDFRISDNGS-SISVPSSMVG 91
           LF+ A   +     + LY  L   + N++   L     N+   +  +G+ ++SV      
Sbjct: 8   LFLLAAICLTVACKEQLYTGLTEKEANQMQALLLSNDVNVSKEMDKSGNMTLSVEKEDFV 67

Query: 92  KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVA 151
           +A   L   G P     +  E+    +    +   +        E +I R +  I G++ 
Sbjct: 68  RAITILNNNGFPKKKF-ADIEVIFPPSQLVASPSQENAKINYLKEQDIERLLSKIPGVID 126

Query: 152 ARVHIVMPDMGSFRKIGARPTASVMIRAINP-SVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
             V + + +           +A+V++ +    ++  S   I++LV  +V +L + +++V+
Sbjct: 127 CSVSLNVNNN-----ENQPSSAAVLVISSPEVNLAPSVIQIKNLVKNSVDDLKLENISVV 181


>gi|45440272|ref|NP_991811.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           biovar Microtus str. 91001]
 gi|108810010|ref|YP_653926.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           Antiqua]
 gi|108813566|ref|YP_649333.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           Nepal516]
 gi|145600955|ref|YP_001165031.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           Pestoides F]
 gi|150260689|ref|ZP_01917417.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           CA88-4125]
 gi|162418417|ref|YP_001608235.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Yersinia
           pestis Angola]
 gi|165926703|ref|ZP_02222535.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165936453|ref|ZP_02225021.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|166010454|ref|ZP_02231352.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166213895|ref|ZP_02239930.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167402484|ref|ZP_02307939.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167419313|ref|ZP_02311066.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167469434|ref|ZP_02334138.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Yersinia pestis FV-1]
 gi|218927469|ref|YP_002345344.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           CO92]
 gi|229836517|ref|ZP_04456683.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           Pestoides A]
 gi|229840125|ref|ZP_04460284.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229842206|ref|ZP_04462361.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229904054|ref|ZP_04519167.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           Nepal516]
 gi|294502335|ref|YP_003566397.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           Z176003]
 gi|45435128|gb|AAS60688.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           biovar Microtus str. 91001]
 gi|108777214|gb|ABG19733.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           Nepal516]
 gi|108781923|gb|ABG15981.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           Antiqua]
 gi|115346080|emb|CAL18948.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           CO92]
 gi|145212651|gb|ABP42058.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           Pestoides F]
 gi|149290097|gb|EDM40174.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           CA88-4125]
 gi|162351232|gb|ABX85180.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Yersinia pestis Angola]
 gi|165915569|gb|EDR34178.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|165921326|gb|EDR38550.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165990544|gb|EDR42845.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166204870|gb|EDR49350.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166963307|gb|EDR59328.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167048134|gb|EDR59542.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|229679824|gb|EEO75927.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           Nepal516]
 gi|229690516|gb|EEO82570.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229696491|gb|EEO86538.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229706201|gb|EEO92209.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           Pestoides A]
 gi|262360415|gb|ACY57136.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           D106004]
 gi|262364365|gb|ACY60922.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           D182038]
 gi|294352794|gb|ADE63135.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           Z176003]
 gi|320013873|gb|ADV97444.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 243

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 76/206 (36%), Gaps = 7/206 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSS-ISVPSSM 89
           ++  +     ++    + LY  L   + N++   L    I+   +I  +G   ++V    
Sbjct: 7   MLAIVLMTLSLSGCDME-LYSGLSEGEANQMLALLMLHQINAEKQIEKSGMVGLTVDKRQ 65

Query: 90  VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149
              A   L   G P     +  ELF        +   ++   V   E ++   +  + G+
Sbjct: 66  FINAVELLRQNGFPRQRFITVDELFPANQ-LVTSPTQEQAKMVFLKEQQLENMLSHMDGV 124

Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVT 208
           + A V + MP      K     TASV I+       +S ++ I+ LV  AVP +D   ++
Sbjct: 125 IHADVTVAMPM-SVDGKNPLPHTASVFIKYSPEVNLQSYQSQIKGLVRDAVPGIDYAKIS 183

Query: 209 VLDSTGKLLTANEMERNILGKSLSIV 234
           V+        +        G   ++ 
Sbjct: 184 VVMQPANYRFSASEAEQQQGPQTTVQ 209


>gi|85059273|ref|YP_454975.1| type III secretion apparatus [Sodalis glossinidius str.
           'morsitans']
 gi|84779793|dbj|BAE74570.1| type III secretion apparatus [Sodalis glossinidius str.
           'morsitans']
          Length = 242

 Score = 87.8 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 6/167 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF---RISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           LY  L   D N++   L + +ID    R    G ++ V  +    A   L   G P    
Sbjct: 23  LYSGLPEEDANQMLAILMQHHIDADKQRGEGGGITLRVDQTQFINAVELLRLNGFPHRKY 82

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
            +  E+    N   ++   ++   +   E  I   +  + G+V A V I     G     
Sbjct: 83  TTT-EMMFPPNQLVVSPNEEQQKILYLKEQRIEGMLSQMEGVVQADVAIASRSQGG-EGD 140

Query: 168 GARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVLDST 213
            A  + +V I+       ++    IR+LV  AVP L    +++L   
Sbjct: 141 TAPISVAVFIKYSPQVNMETFRMQIRNLVENAVPGLQYDHISILMQP 187


>gi|18072079|gb|AAL58461.1|AF456768_1 putative EscJ protein [Escherichia coli]
          Length = 190

 Score = 87.8 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 72/180 (40%), Gaps = 10/180 (5%)

Query: 35  LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA--NIDFRISDNGS-SISVPSSMVG 91
           LF  A   +     + LY  L   + N++   L     N+   +  +G+ ++SV      
Sbjct: 8   LFFLAAICLTVACKEQLYTGLTEKEANQMQALLLSNDVNVSKEMDKSGNMTLSVEKEDFV 67

Query: 92  KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVA 151
           +A   L   G P     +  E+    +    +   +        E +I R +  I G++ 
Sbjct: 68  RAITILNNNGFPKKKF-ADIEVIFPPSQLVASPSQENAKINYLKEQDIERLLSKIPGVID 126

Query: 152 ARVHIVMPDMGSFRKIGARPTASVMIRAINP-SVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
             V + + +           +A+V++ +    ++  S   I++LV  +V +L + +++V+
Sbjct: 127 CSVSLNVNNN-----ESQPSSAAVLVISSPEVNLAPSVIQIKNLVKNSVDDLKLENISVV 181


>gi|51594674|ref|YP_068865.1| type III secretion system apparatus lipoprotein, EscJ/SsaJ
           [Yersinia pseudotuberculosis IP 32953]
 gi|153948722|ref|YP_001402777.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Yersinia
           pseudotuberculosis IP 31758]
 gi|170026123|ref|YP_001722628.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Yersinia
           pseudotuberculosis YPIII]
 gi|186893677|ref|YP_001870789.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Yersinia
           pseudotuberculosis PB1/+]
 gi|51587956|emb|CAH19559.1| type III secretion system apparatus lipoprotein, EscJ/SsaJ
           [Yersinia pseudotuberculosis IP 32953]
 gi|152960217|gb|ABS47678.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Yersinia pseudotuberculosis IP 31758]
 gi|169752657|gb|ACA70175.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Yersinia pseudotuberculosis YPIII]
 gi|186696703|gb|ACC87332.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Yersinia pseudotuberculosis PB1/+]
          Length = 243

 Score = 87.4 bits (215), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 76/206 (36%), Gaps = 7/206 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSS-ISVPSSM 89
           ++  +     ++    + LY  L   + N++   L    I+   +I  +G   ++V    
Sbjct: 7   MLAIVLMTLSLSGCDME-LYSGLSEGEANQMLALLMLHQINAEKQIEKSGMVGLTVDKRQ 65

Query: 90  VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149
              A   L   G P     +  ELF        +   ++   V   E ++   +  + G+
Sbjct: 66  FINAVELLRQNGFPRQRFITVDELFPANQ-LVTSPTQEQAKMVFLKEQQLENMLSHMDGV 124

Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVT 208
           + A V + MP      K     TASV I+       +S ++ I+ LV  AVP +D   ++
Sbjct: 125 IHADVTVAMPM-SVDGKNPLPHTASVFIKYSPEVNLQSYQSQIKGLVRDAVPGIDYAKIS 183

Query: 209 VLDSTGKLLTANEMERNILGKSLSIV 234
           V+        +        G   ++ 
Sbjct: 184 VVMQPANYRFSASEAEQQQGPQTTVQ 209


>gi|15804234|ref|NP_290273.1| hypothetical protein Z5124 [Escherichia coli O157:H7 EDL933]
 gi|15833827|ref|NP_312600.1| EscJ [Escherichia coli O157:H7 str. Sakai]
 gi|168748650|ref|ZP_02773672.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC4113]
 gi|168753523|ref|ZP_02778530.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC4401]
 gi|168759820|ref|ZP_02784827.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC4501]
 gi|168766120|ref|ZP_02791127.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC4486]
 gi|168772331|ref|ZP_02797338.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC4196]
 gi|168779855|ref|ZP_02804862.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC4076]
 gi|189404719|ref|ZP_02810595.2| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC869]
 gi|189405721|ref|ZP_02823676.2| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC508]
 gi|195936256|ref|ZP_03081638.1| EscJ [Escherichia coli O157:H7 str. EC4024]
 gi|208805778|ref|ZP_03248115.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC4206]
 gi|208813611|ref|ZP_03254940.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC4045]
 gi|208821249|ref|ZP_03261569.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC4042]
 gi|209399518|ref|YP_002273170.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC4115]
 gi|215488984|ref|YP_002331415.1| T3SS structure protein EscJ [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217326602|ref|ZP_03442686.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. TW14588]
 gi|254795648|ref|YP_003080485.1| LEE-encoded type III secretion system factor [Escherichia coli
           O157:H7 str. TW14359]
 gi|260869691|ref|YP_003236093.1| T3SS structure protein EscJ [Escherichia coli O111:H- str. 11128]
 gi|261225792|ref|ZP_05940073.1| LEE-encoded type III secretion system factor [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261258837|ref|ZP_05951370.1| T3SS structure protein EscJ [Escherichia coli O157:H7 str. FRIK966]
 gi|291285061|ref|YP_003501879.1| EscJ [Escherichia coli O55:H7 str. CB9615]
 gi|312967942|ref|ZP_07782154.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|12518464|gb|AAG58837.1|AE005596_7 escJ [Escherichia coli O157:H7 str. EDL933]
 gi|2865286|gb|AAC38379.1| EscJ [Escherichia coli]
 gi|3414907|gb|AAC31518.1| L0039 [Escherichia coli]
 gi|13364048|dbj|BAB37996.1| type III secretion system EscJ protein [Escherichia coli O157:H7
           str. Sakai]
 gi|187771787|gb|EDU35631.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC4196]
 gi|188016943|gb|EDU55065.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC4113]
 gi|189002607|gb|EDU71593.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC4076]
 gi|189358868|gb|EDU77287.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC4401]
 gi|189364584|gb|EDU83003.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC4486]
 gi|189369495|gb|EDU87911.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC4501]
 gi|189374615|gb|EDU93031.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC869]
 gi|189378814|gb|EDU97230.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC508]
 gi|195957524|gb|ACG59635.1| type III secretion system protein EscJ [Escherichia coli O157:H7]
 gi|195957583|gb|ACG59693.1| type III secretion system protein EscJ [Escherichia coli]
 gi|195957640|gb|ACG59749.1| EscJ [Escherichia coli]
 gi|208725579|gb|EDZ75180.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC4206]
 gi|208734888|gb|EDZ83575.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC4045]
 gi|208741372|gb|EDZ89054.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC4042]
 gi|209160918|gb|ACI38351.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC4115]
 gi|215267056|emb|CAS11501.1| T3SS structure protein EscJ [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217322823|gb|EEC31247.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. TW14588]
 gi|221361430|emb|CAX18583.1| Type III secretion system, LEE associated [Escherichia coli]
 gi|221361487|emb|CAX18658.1| Type III secretion system, LEE associated [Escherichia coli]
 gi|221361548|emb|CAX18738.1| Type III secretion system, LEE associated [Escherichia coli]
 gi|254595048|gb|ACT74409.1| LEE-encoded type III secretion system factor [Escherichia coli
           O157:H7 str. TW14359]
 gi|255348321|gb|ACU09463.1| EscJ protein [Escherichia coli]
 gi|257766047|dbj|BAI37542.1| T3SS structure protein EscJ [Escherichia coli O111:H- str. 11128]
 gi|290764934|gb|ADD58895.1| EscJ [Escherichia coli O55:H7 str. CB9615]
 gi|312287503|gb|EFR15411.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|320191253|gb|EFW65903.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC1212]
 gi|320193807|gb|EFW68440.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli WV_060327]
 gi|320201524|gb|EFW76103.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli EC4100B]
 gi|320639364|gb|EFX08979.1| EscJ [Escherichia coli O157:H7 str. G5101]
 gi|320644808|gb|EFX13844.1| EscJ [Escherichia coli O157:H- str. 493-89]
 gi|320650072|gb|EFX18568.1| EscJ [Escherichia coli O157:H- str. H 2687]
 gi|320655419|gb|EFX23354.1| EscJ [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320661046|gb|EFX28482.1| EscJ [Escherichia coli O55:H7 str. USDA 5905]
 gi|320666171|gb|EFX33177.1| EscJ [Escherichia coli O157:H7 str. LSU-61]
 gi|323178904|gb|EFZ64480.1| hypothetical protein ECOK1180_2638 [Escherichia coli 1180]
 gi|326337303|gb|EGD61138.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. 1044]
 gi|326341677|gb|EGD65466.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. 1125]
          Length = 190

 Score = 87.4 bits (215), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 73/180 (40%), Gaps = 10/180 (5%)

Query: 35  LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA--NIDFRISDNGS-SISVPSSMVG 91
           LF+ A   +     + LY  L   + N++   L     N+   +  +G+ ++SV      
Sbjct: 8   LFLLAAICLTVACKEQLYTGLTEKEANQMQALLLSNDVNVSKEMDKSGNMTLSVEKEDFV 67

Query: 92  KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVA 151
           +A   L   G P     +  E+    +    +   +        E +I R +  I G++ 
Sbjct: 68  RAITILNNNGFPKKKF-ADIEVIFPPSQLVASPSQENAKINYLKEQDIERLLSKIPGVID 126

Query: 152 ARVHIVMPDMGSFRKIGARPTASVMIRAINP-SVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
             V + + +           +A+V++ +    ++  S   I++LV  +V +L + +++V+
Sbjct: 127 CSVSLNVNNN-----ESQPSSAAVLVISSPEVNLAPSVIQIKNLVKNSVDDLKLENISVV 181


>gi|54311610|emb|CAG17525.1| EscJ protein [Escherichia coli]
          Length = 190

 Score = 87.4 bits (215), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 73/180 (40%), Gaps = 10/180 (5%)

Query: 35  LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA--NIDFRISDNGS-SISVPSSMVG 91
           LF+ A   +     + LY  L   + N++   L     N+   +  +G+ ++SV      
Sbjct: 8   LFLLAAICLTVACKEQLYTGLTEKEANQMQALLLSNDVNVSKEMDKSGNMTLSVEKEDFV 67

Query: 92  KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVA 151
           +A   L   G P     +  E+    +    +   +        E +I R +  I G++ 
Sbjct: 68  RAITILNNNGFPKKKF-ANIEVIFPPSQLVASPSQENAKINYLKEQDIERLLSKIPGVID 126

Query: 152 ARVHIVMPDMGSFRKIGARPTASVMIRAINP-SVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
             V + + +           +A+V++ +    ++  S   I++LV  +V +L + +++V+
Sbjct: 127 CSVSLNVNNN-----ESQPSSAAVLVISSPEVNLAPSVIQIKNLVKNSVDDLKLENISVV 181


>gi|310923250|emb|CBW54716.1| YscJ, lipoprotein, signal peptidase II cleavage site LFLTG-CKVDL,
           length difference in automated annotation (should start
           at 35114 gtg/V, point mutation here from M to V), PMID
           18227263 [Yersinia enterocolitica (type O:8)]
 gi|318608181|emb|CBY78155.1| type III secretion bridge between inner and outermembrane
           lipoprotein (YscJ,HrcJ,EscJ, PscJ) [Yersinia
           enterocolitica subsp. palearctica Y11]
          Length = 210

 Score = 87.0 bits (214), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 67/153 (43%), Gaps = 6/153 (3%)

Query: 63  ISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
           +   L +  +      +      + V  S V +A   L  +G P  S ++  ++F K   
Sbjct: 1   MLALLRQEGLSADKEPDKDGKIKLLVEESDVAQAIDILKRKGYPHESFSTLQDVFPKD-G 59

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIR 178
              +   +      A   EI+RT+  I G++ ARVH+V+P+  + + K G   +ASV I+
Sbjct: 60  LISSPIEELARLNYAKAQEISRTLSEIDGVLVARVHVVLPEEQNNKGKKGVAASASVFIK 119

Query: 179 AINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
                 + +    I+ LV  ++  L    ++V+
Sbjct: 120 HAADIQFDTYIPQIKQLVNNSIEGLAYDRISVI 152


>gi|220915860|ref|YP_002491164.1| secretory protein YscJ/FliF family protein [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219953714|gb|ACL64098.1| secretory protein YscJ/FliF family protein [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 239

 Score = 86.6 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 7/134 (5%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRIS-----DNGSSISVPSSMVGKARIHLAAQGLP 103
           + L   L+    N + VAL E  I    +     D G  + V ++   +AR  LA + LP
Sbjct: 20  EALLHGLDEPQANDVLVALDEGGIAAEKAREDGADAGWEVRVAAADAVRARRVLAERDLP 79

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
                +G++      S   T+  +    + AL GE+AR+I++I G+V ARVH+ +P    
Sbjct: 80  RQ-RPAGFDAVLAKGSMVPTATEEHALYLHALSGELARSIEAIDGVVGARVHLGLPQADP 138

Query: 164 FRKIGAR-PTASVM 176
           FR      P A+V+
Sbjct: 139 FRPGERPAPRAAVL 152


>gi|283786642|ref|YP_003366507.1| T3SS structural protein EscJ [Citrobacter rodentium ICC168]
 gi|15723917|gb|AAL06364.1|AF311901_16 EscJ [Citrobacter rodentium]
 gi|282950096|emb|CBG89730.1| T3SS structural protein EscJ [Citrobacter rodentium ICC168]
          Length = 190

 Score = 86.6 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 66/164 (40%), Gaps = 10/164 (6%)

Query: 51  LYVKLEVSDVNRISVALSEA--NIDFRISDNGS-SISVPSSMVGKARIHLAAQGLPSSSS 107
           LY  L   + N +   L     N+   +  +G+ +ISV      +A   L   G P    
Sbjct: 24  LYTGLTEKEANLMQALLLSNDVNVSKEMDKSGNVTISVEKEDFVRAITILNNNGFPKKKF 83

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
            +  E+    +    +   +        E +I R +  I G++   V + + +       
Sbjct: 84  -ADIEVIFPPSQLVTSPSQENAKINYLKEQDIERLLSKIPGVIDCSVSLNVNNN-----E 137

Query: 168 GARPTASVMIRAINP-SVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
               +A+V++ +    ++  S   I++L+  +V +L + +++V+
Sbjct: 138 SQPSSAAVLVISSPEVNLAPSVIQIKNLIKNSVDDLKLENISVV 181


>gi|16904094|gb|AAL30751.1|AF435079_1 putative EscJ protein [Escherichia coli]
          Length = 190

 Score = 85.8 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 67/164 (40%), Gaps = 10/164 (6%)

Query: 51  LYVKLEVSDVNRISVALSEA--NIDFRISDNGS-SISVPSSMVGKARIHLAAQGLPSSSS 107
           LY  L   + N++   L     N+   +  +G+ +ISV      +A   L   G P    
Sbjct: 24  LYTGLTEKEANQMQALLLSNDVNVSKEMDKSGNVTISVEKEDFVRAITILNNNGFPKKKF 83

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
            +  E+    +    +   +        + +I R +  I G++   V + + +       
Sbjct: 84  -ADIEVIFPPSQLVASPSQENAKINYLKDQDIERLLSKIPGVIDCSVSLNVNNN-----E 137

Query: 168 GARPTASVMIRAINP-SVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
               +A+V++ +    ++  S   I++LV  +V +L + +++V+
Sbjct: 138 SQPSSAAVLVISSPEVNLAPSVIQIKNLVKNSVDDLKLENISVV 181


>gi|207111036|ref|ZP_03245198.1| flagellar MS-ring protein [Helicobacter pylori HPKX_438_CA4C1]
          Length = 69

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 47/69 (68%), Gaps = 2/69 (2%)

Query: 81  SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140
            +I +P   V + RI LA+QG+P +S   G+E+FD  + FG T F Q I  +RA+EGE++
Sbjct: 1   DTILIPKDKVYEERITLASQGIPKTSK-VGFEIFDTKD-FGATDFDQNIKLIRAIEGELS 58

Query: 141 RTIQSISGI 149
           RTI+S++ I
Sbjct: 59  RTIESLNPI 67


>gi|94986985|ref|YP_594918.1| LscJ [Lawsonia intracellularis PHE/MN1-00]
 gi|94731234|emb|CAJ54597.1| LscJ [Lawsonia intracellularis PHE/MN1-00]
          Length = 290

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 61/163 (37%), Gaps = 5/163 (3%)

Query: 52  YVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGLPSSSSN 108
           Y  L    VN +   L    ID   S  G    S+ V    +  A   L    LP  +  
Sbjct: 46  YKGLTEDQVNEMVATLIYRGIDVEKSPGGKEGFSLLVAEEQLISALEILKKNALPRENYV 105

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           S  E+F        +   +      A+  E+A T   I G++  RVH+V           
Sbjct: 106 SLGEVF-SGQGMISSQSEERARMAYAISQELANTFSRIDGVLTTRVHVVPGYTDQAVDSK 164

Query: 169 ARPTASVMIRAINPS-VYKSAEAIRHLVAAAVPNLDMGDVTVL 210
             P+  + IR    S V     +IR + A ++P+L+    +V+
Sbjct: 165 ILPSMGIFIRHTPDSPVVNMLPSIREVAAKSLPDLEYDRTSVM 207


>gi|194350713|gb|ACF53787.1| HrcJ [Pectobacterium carotovorum subsp. brasiliensis]
          Length = 120

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 2/121 (1%)

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           + + +  + +A   L A GLP  S  +  E+F K +    T   +    + AL  E+  T
Sbjct: 1   LVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK-SGVISTPLEERARYIYALSQEVEAT 59

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPN 201
           +  I G++ ARVH+V+P+  +  +     +A+V I+          E  IR +VA+++P 
Sbjct: 60  LAQIDGVLVARVHVVLPERIAPGEPVHPASAAVFIKYRAELEPDGMEQRIRRMVASSIPG 119

Query: 202 L 202
           L
Sbjct: 120 L 120


>gi|312912394|dbj|BAJ36368.1| needle complex inner membrane lipoprotein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
          Length = 249

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 71/184 (38%), Gaps = 6/184 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90
           I+      FF+ +    +LY  L   + N++   L + +ID      ++G ++ V  S  
Sbjct: 6   IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   L   G P     +  ++F       ++   ++       E  I   +  + G++
Sbjct: 65  INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVI 123

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209
            A+V I +P         +  + +V I+       ++    I+ L+  ++P L    +++
Sbjct: 124 NAKVTIALPTYDE-GSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISI 182

Query: 210 LDST 213
           L   
Sbjct: 183 LMQP 186


>gi|291086627|ref|ZP_06356294.2| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Citrobacter youngae ATCC 29220]
 gi|291067482|gb|EFE05591.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Citrobacter youngae ATCC 29220]
          Length = 247

 Score = 83.9 bits (206), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 73/179 (40%), Gaps = 5/179 (2%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF--RISDNG-SSISVPSSMVGKARIHLAAQGLPSSSS 107
           LY  L   + N+++V L   +ID   +++ +G  S+S+  +    A   L   G P    
Sbjct: 24  LYDNLSQEEANQMAVLLLARHIDVDKKVNKDGLFSLSIDKADFASAVEILRLHGYPQKKY 83

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
            S  ++F        +   +    +   E  + R +  + G+++ RV I  P        
Sbjct: 84  RSVEDVFPSDQ-LVTSPGQELSKIIYLKEQGLERMLADMDGVISTRVVIAQPLNTDDDAD 142

Query: 168 GARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN 225
            A  + +V I+    +  + S   I+ LV  ++P+L    ++++      +   ++  +
Sbjct: 143 KAMTSVAVFIKYAPENNLQNSLTQIKGLVHDSIPDLSYDKISIVLQPINYIKTTDVSAS 201


>gi|304414266|ref|ZP_07395634.1| needle complex inner membrane lipoprotein [Candidatus Regiella
           insecticola LSR1]
 gi|304283480|gb|EFL91876.1| needle complex inner membrane lipoprotein [Candidatus Regiella
           insecticola LSR1]
          Length = 243

 Score = 83.5 bits (205), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 65/181 (35%), Gaps = 6/181 (3%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDNGSSI--SVPSSMV 90
              +       +    +LY  L   + N +   L   NI   + S+ G  +   V     
Sbjct: 7   GFMVLLILLSLTGCKVDLYNGLAEGEANEMLALLMLHNISANKESEKGGKVGLKVERDHF 66

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   L   G P  S  +  +LF        +   ++   V   E ++   +  + G++
Sbjct: 67  ITAVELLRQNGYPRKSYATVDQLFPSNQ-LVTSPVQEQAKMVYLKEQQLESMLSHMDGVI 125

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209
            A V I M       K+    +ASV I+        S +  I+ LV  AVP +    ++V
Sbjct: 126 HADVTIAMMAPVD-GKVSVPSSASVFIKFSPEVNLASYSPQIKSLVQDAVPGVAYEKISV 184

Query: 210 L 210
           L
Sbjct: 185 L 185


>gi|322615106|gb|EFY12029.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315996572]
 gi|322619948|gb|EFY16821.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-1]
 gi|322622259|gb|EFY19104.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-3]
 gi|322627781|gb|EFY24571.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-4]
 gi|322636635|gb|EFY33338.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-2]
 gi|322641172|gb|EFY37814.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 531954]
 gi|322644893|gb|EFY41426.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. NC_MB110209-0054]
 gi|322655844|gb|EFY52146.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. CASC_09SCPH15965]
 gi|322660169|gb|EFY56408.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 19N]
 gi|322665264|gb|EFY61452.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 81038-01]
 gi|322669521|gb|EFY65669.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MD_MDA09249507]
 gi|322673447|gb|EFY69549.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 414877]
 gi|322677375|gb|EFY73439.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 366867]
 gi|322679962|gb|EFY76001.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 413180]
 gi|322687434|gb|EFY83406.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 446600]
 gi|323194114|gb|EFZ79313.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609458-1]
 gi|323198594|gb|EFZ83695.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556150-1]
 gi|323202920|gb|EFZ87955.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609460]
 gi|323208640|gb|EFZ93578.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 507440-20]
 gi|323217618|gb|EGA02333.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB101509-0077]
 gi|323218966|gb|EGA03476.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB102109-0047]
 gi|323229419|gb|EGA13542.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB111609-0052]
 gi|323232642|gb|EGA16738.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009083312]
 gi|323240320|gb|EGA24364.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009085258]
 gi|323242691|gb|EGA26712.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315731156]
 gi|323245903|gb|EGA29891.1| type III secretion system lipoprotein SsaJ [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323252467|gb|EGA36314.1| type III secretion system lipoprotein SsaJ [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323255110|gb|EGA38894.1| type III secretion system lipoprotein SsaJ [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323260049|gb|EGA43674.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008284]
 gi|323267187|gb|EGA50672.1| type III secretion system lipoprotein SsaJ [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323271490|gb|EGA54911.1| type III secretion system lipoprotein SsaJ [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
          Length = 249

 Score = 83.5 bits (205), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 71/184 (38%), Gaps = 6/184 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90
           I+      FF+ +    +LY  L   + N++   L + +ID      ++G ++ V  S  
Sbjct: 6   IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   L   G P     +  ++F       ++   ++       E  I   +  + G++
Sbjct: 65  INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVI 123

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209
            A+V I +P         +  + +V I+       ++    I+ L+  ++P L    +++
Sbjct: 124 NAKVTIALPTYDE-GSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISI 182

Query: 210 LDST 213
           L   
Sbjct: 183 LMQP 186


>gi|16760502|ref|NP_456119.1| pathogenicity island lipoprotein [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29141738|ref|NP_805080.1| pathogenicity island lipoprotein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213022228|ref|ZP_03336675.1| putative pathogenicity island lipoprotein [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
 gi|213584548|ref|ZP_03366374.1| putative pathogenicity island lipoprotein [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213620458|ref|ZP_03373284.1| putative pathogenicity island lipoprotein [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213647278|ref|ZP_03377331.1| putative pathogenicity island lipoprotein [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213859469|ref|ZP_03385173.1| putative pathogenicity island lipoprotein [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|289826228|ref|ZP_06545340.1| putative pathogenicity island lipoprotein [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|25512033|pir||AC0698 probable pathogenicity island lipoprotein ssaJ [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16502798|emb|CAD01956.1| putative pathogenicity island lipoprotein [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29137366|gb|AAO68929.1| putative pathogenicity island lipoprotein [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
          Length = 249

 Score = 83.5 bits (205), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 71/184 (38%), Gaps = 6/184 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90
           I+      FF+ +    +LY  L   + N++   L + +ID      ++G ++ V  S  
Sbjct: 6   IIFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   L   G P     +  ++F       ++   ++       E  I   +  + G++
Sbjct: 65  INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVI 123

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209
            A+V I +P         +  + +V I+       ++    I+ L+  ++P L    +++
Sbjct: 124 NAKVTIALPTYDE-GSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISI 182

Query: 210 LDST 213
           L   
Sbjct: 183 LMQP 186


>gi|16764759|ref|NP_460374.1| needle complex inner membrane lipoprotein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|167995043|ref|ZP_02576133.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|3024642|sp|P74852|SSAJ_SALTY RecName: Full=Secretion system apparatus lipoprotein ssaJ; Flags:
           Precursor
 gi|1669745|emb|CAA70532.1| secretion system apparatus [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|16419930|gb|AAL20333.1| secretion system apparatus protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|205327210|gb|EDZ13974.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|261246615|emb|CBG24425.1| putative pathogenicity island lipoprotein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267993298|gb|ACY88183.1| needle complex inner membrane lipoprotein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301157944|emb|CBW17439.1| putative pathogenicity island lipoprotein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|323129681|gb|ADX17111.1| needle complex inner membrane lipoprotein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|332988296|gb|AEF07279.1| needle complex inner membrane lipoprotein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 249

 Score = 83.5 bits (205), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 71/184 (38%), Gaps = 6/184 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90
           I+      FF+ +    +LY  L   + N++   L + +ID      ++G ++ V  S  
Sbjct: 6   IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   L   G P     +  ++F       ++   ++       E  I   +  + G++
Sbjct: 65  INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVI 123

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209
            A+V I +P         +  + +V I+       ++    I+ L+  ++P L    +++
Sbjct: 124 NAKVTIALPTYDE-GSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISI 182

Query: 210 LDST 213
           L   
Sbjct: 183 LMQP 186


>gi|62180000|ref|YP_216417.1| secretion system apparatus SsaJ [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|168240922|ref|ZP_02665854.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|168263759|ref|ZP_02685732.1| secretion system apparatus SsaJ [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168463181|ref|ZP_02697112.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|194446558|ref|YP_002040661.1| type III secretion apparatus lipoprotein YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194449848|ref|YP_002045412.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|197263539|ref|ZP_03163613.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|200389425|ref|ZP_03216036.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|62127633|gb|AAX65336.1| Secretion system apparatus SsaJ [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|194405221|gb|ACF65443.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194408152|gb|ACF68371.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|195634338|gb|EDX52690.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197241794|gb|EDY24414.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|199601870|gb|EDZ00416.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|205339355|gb|EDZ26119.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|205347655|gb|EDZ34286.1| secretion system apparatus SsaJ [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|322714467|gb|EFZ06038.1| secretion system apparatus SsaJ [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 249

 Score = 83.1 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 71/184 (38%), Gaps = 6/184 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90
           I+      FF+ +    +LY  L   + N++   L + +ID      ++G ++ V  S  
Sbjct: 6   IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   L   G P     +  ++F       ++   ++       E  I   +  + G++
Sbjct: 65  INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVI 123

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209
            A+V I +P         +  + +V I+       ++    I+ L+  ++P L    +++
Sbjct: 124 NAKVTIALPTYDE-GSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISI 182

Query: 210 LDST 213
           L   
Sbjct: 183 LMQP 186


>gi|313634363|gb|EFS00960.1| flagellar M-ring protein FliF [Listeria seeligeri FSL N1-067]
 gi|313639038|gb|EFS04028.1| flagellar M-ring protein FliF [Listeria seeligeri FSL S4-171]
          Length = 160

 Score = 83.1 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 68/160 (42%), Gaps = 13/160 (8%)

Query: 15  TSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-NLYVKLEVSDVNRISVALSEANID 73
           + L       +   + V + +F+    ++N+P  +  LY  L  +   +++  L++  +D
Sbjct: 9   SKLKNWHKGAIFVGLFVVVTVFL---LYLNTPKTEITLYKNLSETSQQQVTDQLAKMGVD 65

Query: 74  FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
           + +  +G+ I V   +    R   A  G+P +  +    L    +S G +   +++    
Sbjct: 66  YTVDKSGN-ILVDEKVETLVRDKFADLGIPYTGQDGNDILL--NSSLGASEEDKKMQEKV 122

Query: 134 A----LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA 169
                LE EI ++  +   + +A V + +P+  S  +  +
Sbjct: 123 GTKVNLEKEIVQSYGT--TVDSASVQLTLPESSSIFEEAS 160


>gi|198244261|ref|YP_002215722.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|197938777|gb|ACH76110.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
          Length = 249

 Score = 83.1 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 71/184 (38%), Gaps = 6/184 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90
           I+      FF+ +    +LY  L   + N++   L + +ID      ++G ++ V  S  
Sbjct: 6   IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   L   G P     +  ++F       ++   ++       E  I   +  + G++
Sbjct: 65  INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVI 123

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209
            A+V I +P         +  + +V I+       ++    I+ L+  ++P L    +++
Sbjct: 124 NAKVTIALPTYDE-GSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISI 182

Query: 210 LDST 213
           L   
Sbjct: 183 LMQP 186


>gi|56413620|ref|YP_150695.1| pathogenicity island lipoprotein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|167551622|ref|ZP_02345376.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|168822279|ref|ZP_02834279.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|197362544|ref|YP_002142181.1| pathogenicity island lipoprotein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|207857085|ref|YP_002243736.1| pathogenicity island lipoprotein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|56127877|gb|AAV77383.1| putative pathogenicity island lipoprotein [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197094021|emb|CAR59517.1| putative pathogenicity island lipoprotein [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|205323639|gb|EDZ11478.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205341290|gb|EDZ28054.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|206708888|emb|CAR33218.1| putative pathogenicity island lipoprotein [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|320086111|emb|CBY95885.1| Secretion system apparatus lipoprotein ssaJ Flags: Precursor
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
          Length = 249

 Score = 83.1 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 71/184 (38%), Gaps = 6/184 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90
           I+      FF+ +    +LY  L   + N++   L + +ID      ++G ++ V  S  
Sbjct: 6   IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   L   G P     +  ++F       ++   ++       E  I   +  + G++
Sbjct: 65  INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVI 123

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209
            A+V I +P         +  + +V I+       ++    I+ L+  ++P L    +++
Sbjct: 124 NAKVTIALPTYDE-GSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISI 182

Query: 210 LDST 213
           L   
Sbjct: 183 LMQP 186


>gi|168239293|ref|ZP_02664351.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194736650|ref|YP_002114422.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194712152|gb|ACF91373.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197288000|gb|EDY27387.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 249

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 71/184 (38%), Gaps = 6/184 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90
           I+      FF+ +    +LY  L   + N++   L + +ID      ++G ++ V  S  
Sbjct: 6   IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   L   G P     +  ++F       ++   ++       E  I   +  + G++
Sbjct: 65  INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVI 123

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209
            A+V I +P         +  + +V I+       ++    I+ L+  ++P L    +++
Sbjct: 124 NAKVTIALPTYDE-GSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISI 182

Query: 210 LDST 213
           L   
Sbjct: 183 LMQP 186


>gi|108759060|ref|YP_630659.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Myxococcus xanthus DK 1622]
 gi|108462940|gb|ABF88125.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Myxococcus xanthus DK 1622]
          Length = 272

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 70/167 (41%), Gaps = 13/167 (7%)

Query: 55  LEVSDVNRISVALSEANIDFRIS--DNGS----SISVPSSMVGKARIHLAAQGLPSSSSN 108
           L  +D N I V LS+  I+ +    + G+     I+VP +   +A   L    LP     
Sbjct: 29  LSEADANEIYVLLSKNGINAKKEKEEGGNEVRFMITVPKADAAQAAELLKLNSLPRPVEK 88

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
                     S   T+  +    ++A+ GE++  +  I G++ AR  +++P+     +  
Sbjct: 89  GLAHF--AKGSMVPTATEERAMLLKAMGGEVSNALNQIDGVLEARAIVMIPENNDLTQPE 146

Query: 169 AR--PTASVMIRAINPSVYK---SAEAIRHLVAAAVPNLDMGDVTVL 210
            +  P+ASV I+       K       ++   A AVP L    VTVL
Sbjct: 147 NKPMPSASVFIKYRPGEGGKPPIDTAVVQQFAATAVPELKASAVTVL 193


>gi|168233604|ref|ZP_02658662.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|194471741|ref|ZP_03077725.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|197247506|ref|YP_002146633.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|204927796|ref|ZP_03218997.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|194458105|gb|EDX46944.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|197211209|gb|ACH48606.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|204323138|gb|EDZ08334.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205332334|gb|EDZ19098.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
          Length = 249

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 71/184 (38%), Gaps = 6/184 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90
           I+      FF+ +    +LY  L   + N++   L + +ID      ++G ++ V  S  
Sbjct: 6   IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   L   G P     +  ++F       ++   ++       E  I   +  + G++
Sbjct: 65  INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVI 123

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209
            A+V I +P         +  + +V I+       ++    I+ L+  ++P L    +++
Sbjct: 124 NAKVTIALPTYDE-GSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISI 182

Query: 210 LDST 213
           L   
Sbjct: 183 LMQP 186


>gi|284007385|emb|CBA72784.1| Type III secretion bridge between inner and outermembrane
           lipoprotein YscJ,HrcJ,EscJ, PscJ [Arsenophonus nasoniae]
          Length = 263

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 73/192 (38%), Gaps = 6/192 (3%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANID-FRISD--NGSSISVPSSMVGKARIHLAAQGLP 103
           +   L   L+ +  N +   L + NID ++     +G  I +       A   +   GLP
Sbjct: 19  NQQELLKNLDQNQANEVIALLQQNNIDAYKKESAKSGYIIYIEKEDFIPAVDLINRYGLP 78

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
                   ++F    S   +   ++      +E  +A+++ SI GIV A VHI       
Sbjct: 79  RKPRLEIAQMFPSD-SLVSSPLAEKARLYSGIEQRLAQSLHSIEGIVTAHVHISYELNSL 137

Query: 164 FRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE 221
             K   +   S +I+  +    V      I+  +  +V  +   D++V+ +  + +   +
Sbjct: 138 ENKKEHKYHVSALIKYNDTIKDVNLLINDIKRFLKNSVNGVSYDDISVVTTEMEQINRLK 197

Query: 222 MERNILGKSLSI 233
              N  G + S 
Sbjct: 198 SISNHQGTTSSF 209


>gi|238913187|ref|ZP_04657024.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Tennessee
           str. CDC07-0191]
          Length = 249

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 71/184 (38%), Gaps = 6/184 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90
           I+      FF+ +    +LY  L   + N++   L + +ID      ++G ++ V  S  
Sbjct: 6   IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   L   G P     +  ++F       ++   ++       E  I   +  + G++
Sbjct: 65  INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPLEEQQKINFLKEQRIEGMLSQMEGVI 123

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209
            A+V I +P         +  + +V I+       ++    I+ L+  ++P L    +++
Sbjct: 124 NAKVTIALPTYDE-GSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISI 182

Query: 210 LDST 213
           L   
Sbjct: 183 LMQP 186


>gi|205352875|ref|YP_002226676.1| pathogenicity island lipoprotein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205272656|emb|CAR37566.1| putative pathogenicity island lipoprotein [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|309243403|gb|ADO51979.1| SsaJ [Salmonella enterica subsp. enterica serovar Gallinarum]
 gi|326627947|gb|EGE34290.1| putative pathogenicity island lipoprotein [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 249

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 71/184 (38%), Gaps = 6/184 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90
           I+      FF+ +    +LY  L   + N++   L + +ID      ++G ++ V  S  
Sbjct: 6   IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   L   G P     +  ++F       ++   ++       E  I   +  + G++
Sbjct: 65  INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVI 123

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209
            A+V I +P         +  + +V I+       ++    I+ L+  ++P L    +++
Sbjct: 124 NAKVTIALPTYDE-GSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISL 182

Query: 210 LDST 213
           L   
Sbjct: 183 LMQP 186


>gi|315301965|ref|ZP_07872961.1| flagellar M-ring protein FliF [Listeria ivanovii FSL F6-596]
 gi|313629672|gb|EFR97809.1| flagellar M-ring protein FliF [Listeria ivanovii FSL F6-596]
          Length = 159

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 66/158 (41%), Gaps = 13/158 (8%)

Query: 15  TSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-NLYVKLEVSDVNRISVALSEANID 73
           + L       +   + V + +F+    ++N P  +  LY  L  +   +++  L++  +D
Sbjct: 9   SKLKNWHKGAIFVGLFVVVTVFL---LYLNMPKTEITLYKNLSETSQQQVTDQLAKMGVD 65

Query: 74  FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
           + +  +G+ I V   +    R   A  G+P +  +    L    +S G +   +++    
Sbjct: 66  YTVDKSGN-ILVDEKVETLVRDKFADLGIPYTGQDGNDILL--NSSLGASEEDKKMQEKV 122

Query: 134 A----LEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
                LE EI ++  +   + +A V + +P+  S  + 
Sbjct: 123 GTKVNLEKEIVQSYGT--TVDSASVQLTLPESSSIFEE 158


>gi|71042041|pdb|1YJ7|A Chain A, Crystal Structure Of Enteropathogenic E.Coli (Epec) Type
           Iii Secretion System Protein Escj
 gi|71042042|pdb|1YJ7|B Chain B, Crystal Structure Of Enteropathogenic E.Coli (Epec) Type
           Iii Secretion System Protein Escj
 gi|71042043|pdb|1YJ7|C Chain C, Crystal Structure Of Enteropathogenic E.Coli (Epec) Type
           Iii Secretion System Protein Escj
 gi|71042044|pdb|1YJ7|D Chain D, Crystal Structure Of Enteropathogenic E.Coli (Epec) Type
           Iii Secretion System Protein Escj
          Length = 171

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 69/164 (42%), Gaps = 10/164 (6%)

Query: 51  LYVKLEVSDVNRISVALSEA--NIDFRISDNGS-SISVPSSMVGKARIHLAAQGLPSSSS 107
           LY  L   + N++   L     N+   +  +G+ ++SV ++   +A   L   G P    
Sbjct: 5   LYTGLTEKEANQMQALLLSNDVNVSKEMDKSGNMTLSVAAADFVRAITILNNNGFPKKKF 64

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
            +  E+    +    +   +        E +I R +  I G++   V + + +       
Sbjct: 65  -ADIEVIFPPSQLVASPSQENAKINYLKEQDIERLLSKIPGVIDCSVSLNVNNN-----E 118

Query: 168 GARPTASVMIRAINP-SVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
               +A+V++ +    ++  S   I++LV  +V +L + +++V+
Sbjct: 119 SQPSSAAVLVISSPEVNLAPSVIQIKNLVKNSVDDLKLENISVV 162


>gi|330940717|gb|EGH43725.1| flagellar MS-ring protein [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 104

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 35/81 (43%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           + F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L
Sbjct: 24  MSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83

Query: 68  SEANIDFRISDNGSSISVPSS 88
           + ANI++ +  N  ++ V S 
Sbjct: 84  TAANINYTVEPNSGALLVKSD 104


>gi|308126335|ref|ZP_07663715.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio
           parahaemolyticus AQ4037]
 gi|308110706|gb|EFO48246.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio
           parahaemolyticus AQ4037]
          Length = 190

 Score = 81.2 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 3/129 (2%)

Query: 84  SVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTI 143
            V SS +  A   L  +G P    ++  E+F K +    +   +    V A   E++ T+
Sbjct: 2   MVDSSQIAFAVDALKRKGYPREQFSTLKEVFPKDD-LISSPLAERARLVYAKSQELSSTL 60

Query: 144 QSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPN 201
             I G++ ARVH+V+ D      +     +ASV I+        S    I+ LV  ++  
Sbjct: 61  SQIDGVLVARVHVVLEDQDLRPGERPTPASASVFIKHAADVALDSYVPQIKLLVNNSIEG 120

Query: 202 LDMGDVTVL 210
           L+   ++V+
Sbjct: 121 LNYDRISVV 129


>gi|291562020|emb|CBL40835.1| Flagellar biosynthesis/type III secretory pathway lipoprotein
           [butyrate-producing bacterium SS3/4]
          Length = 110

 Score = 80.8 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 40/102 (39%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +  L + ++      +  I ++A+  ++     +          Y  L+  +   D   +
Sbjct: 5   VQNLKEAWQKMPGKTKKMIAVIAAGTIILAAAGLLVLNIGTKKGYSTLFTGMSSDDAQAV 64

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSS 105
              L +  +D+R +D   S+ V S  V K R  L ++G P  
Sbjct: 65  VSLLQDEGVDYRYNDKNGSVQVMSDTVDKTRAELLSKGYPKK 106


>gi|238897378|ref|YP_002923055.1| needle complex inner membrane lipoprotein [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|229465133|gb|ACQ66907.1| needle complex inner membrane lipoprotein [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 249

 Score = 80.8 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 83/227 (36%), Gaps = 10/227 (4%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG-SSISVPSSMVG- 91
           + ++       S     LY  L  S+ N++   L   +I+     N   +++V       
Sbjct: 7   IFYIFLIILSLSACNVQLYSGLAQSEANQMLALLMLHHINAEKQQNKDGTVTVNVDRKHF 66

Query: 92  -KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   L   G P  +  +  ++F        +   ++   V   E ++   +  + G++
Sbjct: 67  IDAVELLRQNGFPRRNYVTVDKIFPSNQ-LVTSPGQEQAKMVYIKEQQLESMLSHMEGVI 125

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVTV 209
              V I +    +  K     +ASV ++       +  ++ I++L+  A+P +D   +++
Sbjct: 126 RVDVSIAVAAPSN-DKNMNPSSASVFMKYSPEINLEIYQSQIKNLIHDAIPGIDYSKISI 184

Query: 210 LDSTGKLLTANE--MERNILGKSLSIVQAIQHEIE--MNINKALAAF 252
           L          +   E + L K      A++  +E    I   LA  
Sbjct: 185 LMQPANFRFTPKKITEADNLQKQEQSHSALEWLLEHIKVIQMILAGL 231


>gi|3776130|emb|CAA12196.1| SsaJ [Salmonella typhimurium]
          Length = 189

 Score = 80.5 bits (197), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 71/184 (38%), Gaps = 6/184 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90
           I+      FF+ +    +LY  L   + N++   L + +ID      ++G ++ V  S  
Sbjct: 6   IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   L   G P     +  ++F       ++   ++       E  I   +  + G++
Sbjct: 65  INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVI 123

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209
            A+V I +P         +  + +V I+       ++    I+ L+  ++P L    +++
Sbjct: 124 NAKVTIALPTYDE-GSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISI 182

Query: 210 LDST 213
           L   
Sbjct: 183 LMQP 186


>gi|321224033|gb|EFX49096.1| Secretion system apparatus SsaJ [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
          Length = 229

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 64/166 (38%), Gaps = 5/166 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108
           LY  L   + N++   L + +ID      ++G ++ V  S    A   L   G P     
Sbjct: 3   LYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQFINAVELLRLNGYPHRQFT 62

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           +  ++F       ++   ++       E  I   +  + G++ A+V I +P         
Sbjct: 63  TADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVINAKVTIALPTYDE-GSNA 120

Query: 169 ARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVLDST 213
           +  + +V I+       ++    I+ L+  ++P L    +++L   
Sbjct: 121 SPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISILMQP 166


>gi|330953274|gb|EGH53534.1| type III secretion component [Pseudomonas syringae Cit 7]
          Length = 130

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 55/136 (40%), Gaps = 11/136 (8%)

Query: 20  TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RIS 77
            R  +L  +I+  +   + A          +LY  L   + N +   L    I    ++ 
Sbjct: 3   KRCRVLRLLIVAALASLLQACDI-------DLYTNLGEREANAMLAVLLRDGIPASRKVQ 55

Query: 78  DNGS-SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136
           DNG   + V      +A   L   GLP  S ++  E+F K N    +   +    V AL 
Sbjct: 56  DNGQLKVMVDEKRFAEAMAALDDAGLPGQSFSNMGEVF-KGNGLVSSPVQERAQMVYALS 114

Query: 137 GEIARTIQSISGIVAA 152
            E++ T+  I GI++A
Sbjct: 115 EELSHTVSQIDGILSA 130


>gi|161614174|ref|YP_001588139.1| hypothetical protein SPAB_01916 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|224584080|ref|YP_002637878.1| pathogenicity island lipoprotein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|161363538|gb|ABX67306.1| hypothetical protein SPAB_01916 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|224468607|gb|ACN46437.1| putative pathogenicity island lipoprotein [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
          Length = 229

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 64/166 (38%), Gaps = 5/166 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108
           LY  L   + N++   L + +ID      ++G ++ V  S    A   L   G P     
Sbjct: 3   LYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQFINAVELLRLNGYPHRQFT 62

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           +  ++F       ++   ++       E  I   +  + G++ A+V I +P         
Sbjct: 63  TADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVINAKVTIALPTYDE-GSNA 120

Query: 169 ARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVLDST 213
           +  + +V I+       ++    I+ L+  ++P L    +++L   
Sbjct: 121 SPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISILMQP 166


>gi|326623470|gb|EGE29815.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Dublin str.
           3246]
          Length = 229

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 64/166 (38%), Gaps = 5/166 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108
           LY  L   + N++   L + +ID      ++G ++ V  S    A   L   G P     
Sbjct: 3   LYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQFINAVELLRLNGYPHRQFT 62

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           +  ++F       ++   ++       E  I   +  + G++ A+V I +P         
Sbjct: 63  TADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVINAKVTIALPTYDE-GSNA 120

Query: 169 ARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVLDST 213
           +  + +V I+       ++    I+ L+  ++P L    +++L   
Sbjct: 121 SPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISILMQP 166


>gi|226313069|ref|YP_002772963.1| flagellar M-ring protein [Brevibacillus brevis NBRC 100599]
 gi|226096017|dbj|BAH44459.1| probable flagellar M-ring protein [Brevibacillus brevis NBRC
           100599]
          Length = 298

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 52/335 (15%), Positives = 108/335 (32%), Gaps = 44/335 (13%)

Query: 225 NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD-PDSK 283
           +   +  +I   ++ +I+ N+   L   +G D        ++N D +   E + + PD +
Sbjct: 2   SSFKQQETIKADVEKKIQQNLYNLLGTIMGRDKVIVHTFLKMNFDKENRVENIVEAPDKE 61

Query: 284 VERSIRLSKDAQR---SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEI 340
               + +S        S   QP   +    N    +        S    ++  +  N E+
Sbjct: 62  NNEGLIISSQKLSKAFSGQGQPPGGIAGTNNNAVTNYPGATPQGSNSQYEELNDTINREV 121

Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400
           N  +   T   YK+E ++I V V         G + D   ++S    +  +V        
Sbjct: 122 NRITRNVTSSPYKIEDITINVGV-----EPPAGGTLDAATLESIKQVLRNVVRVTL---- 172

Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFM--DILSRHFATVINALVFLVGTLLVTFLGLH 458
              D +T    D  + +L    +V              + +  A+++ VG + V  L   
Sbjct: 173 --SDQVT----DLSDTELDKHISVLPRQFSGKAEIEDSSALSPAVLWTVGGIAVLALAAV 226

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A         AK+ +   +     PP+++     L+  ++                    
Sbjct: 227 AFLVYRRRSQAKQQQEEEELPDLLPPLNAGEIPDLIYQEDG------------------- 267

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                      +L  +     + F  +LR W   +
Sbjct: 268 ----DQVVVRKQLEKLARSKPDEFVVLLRTWLAED 298


>gi|124382226|ref|YP_001025747.1| type III secretion inner membrane protein SctJ [Burkholderia mallei
           NCTC 10229]
          Length = 174

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 1/91 (1%)

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
             T   + +  +  +  E++ T+  I G+V ARVHIV+P+     ++    +ASV I+  
Sbjct: 1   MSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPLAQVAKPSSASVFIKYR 60

Query: 181 NPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
             +   +    I++LV  +V  L   +V+V 
Sbjct: 61  PNANLATLTPQIKNLVVHSVEGLTYDEVSVT 91


>gi|238757855|ref|ZP_04619037.1| Secretion system apparatus lipoprotein ssaJ [Yersinia aldovae ATCC
           35236]
 gi|238703840|gb|EEP96375.1| Secretion system apparatus lipoprotein ssaJ [Yersinia aldovae ATCC
           35236]
          Length = 233

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 62/168 (36%), Gaps = 5/168 (2%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
            +LY  L   D N++   L + NID   ++   G ++ V  +    A   L   G P  S
Sbjct: 15  VDLYSALPEEDANQMLAILMQHNIDADKQLVAGGVTLRVEKAQFINAVELLRLNGFPRRS 74

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             S   +F       ++   ++   +   E  I   +  + G+V   V I          
Sbjct: 75  YISADTMFPPNQ-LVVSPAEEQQKILFLKEQRIENMLSQMDGVVHVDVTIASSGPDE-EG 132

Query: 167 IGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVLDST 213
              + + +V I+        +    I++LV  ++P +    +++L   
Sbjct: 133 ATGQTSVAVFIKFWAQVNLVALRVQIKNLVEKSIPGVQQDQISILMQP 180


>gi|207110812|ref|ZP_03244974.1| flagellar MS-ring protein [Helicobacter pylori HPKX_438_CA4C1]
          Length = 82

 Score = 76.2 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 2/78 (2%)

Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLD 203
           ++ I+ A VHI +P    F      P+ASVM++              I++L+AAAVP L 
Sbjct: 1   LNPILKANVHIAIPKDSVFVAKEVPPSASVMLKLKPDMKLSPTQILGIKNLIAAAVPKLT 60

Query: 204 MGDVTVLDSTGKLLTANE 221
             +V +++  G+ +   +
Sbjct: 61  TENVKIVNENGESIGEGD 78


>gi|294636868|ref|ZP_06715199.1| flagellar M-ring protein [Edwardsiella tarda ATCC 23685]
 gi|291089917|gb|EFE22478.1| flagellar M-ring protein [Edwardsiella tarda ATCC 23685]
          Length = 156

 Score = 76.2 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 62/178 (34%), Gaps = 27/178 (15%)

Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDF---LENQLFNSGTVQVSFMDILSRH 435
                 + +IN +V  A G +  RGDT+++ +  F    +N        + +F+D+LS  
Sbjct: 1   ALSQEKMDQINNLVREAMGFSQNRGDTLSVVNTPFNSVADNGGELPFWQKQAFIDLLSTL 60

Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495
              ++ ALV                R+L      K+ +                     P
Sbjct: 61  GRYLLVALV-----------AWLLWRKLVKPMLTKQQQAAALRQQVNTS----------P 99

Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                +   + +     R LQ R  +    +   R+  M E +    A ++R+W  +E
Sbjct: 100 ISAQPVKQPSNEELQQRRKLQQRTTAEAQTE---RVREMAEQDPRVVALVIRQWMSTE 154


>gi|85058534|ref|YP_454236.1| putative type III secretion apparatus [Sodalis glossinidius str.
           'morsitans']
 gi|45504742|gb|AAS66833.1| YsaJ [Sodalis glossinidius]
 gi|84779054|dbj|BAE73831.1| putative type III secretion apparatus [Sodalis glossinidius str.
           'morsitans']
          Length = 259

 Score = 74.7 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 70/186 (37%), Gaps = 6/186 (3%)

Query: 30  LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS---DNGSSISVP 86
           L+   + + A           L   L     N++   L + NI  + S     G +I+VP
Sbjct: 5   LLLTCMVIIAALLTTGCDNTILLNNLSQEQANKVLAVLQQHNIASQKSGSLKEGYAITVP 64

Query: 87  SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146
            S    A   L    LP+       + F   N+   +   +    +   E  + ++++ I
Sbjct: 65  KSDTTTALSILNQYQLPAKPEVQISQAFP-DNALIASPQAERARMLSLQEQRLEQSLKII 123

Query: 147 SGIVAARVHIVMP-DMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDM 204
           S +V ARVH+  P +  +F         S++I              I+ L+   + N+  
Sbjct: 124 SQVVNARVHVSYPLNDNTFITDPPAERVSILITYSGSLNENMFISKIKTLIKNGLANVRF 183

Query: 205 GDVTVL 210
            D++V+
Sbjct: 184 EDISVV 189


>gi|161503496|ref|YP_001570608.1| hypothetical protein SARI_01572 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864843|gb|ABX21466.1| hypothetical protein SARI_01572 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 249

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 65/168 (38%), Gaps = 5/168 (2%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
            +LY  L   + N++   L + +I+      +NG ++ V  S    A   L   G P   
Sbjct: 21  VDLYRSLPEDEANQMLALLMQHHINAEKKQEENGITLRVEQSQFINAVELLRLNGYPHRQ 80

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             +  ++F       ++   ++       E  I   +  + G++  +V I +P       
Sbjct: 81  FMTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVINTKVTIALPIYDE-GS 138

Query: 167 IGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVLDST 213
             +  + +V I+       ++    I+ L+  ++P L  G +++L   
Sbjct: 139 NYSPSSVAVFIKYSPQVNMEALRIKIKDLIEKSIPGLQYGRISILMQP 186


>gi|255022494|ref|ZP_05294480.1| flagellar MS-ring protein [Listeria monocytogenes FSL J1-208]
          Length = 160

 Score = 74.3 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 60/134 (44%), Gaps = 10/134 (7%)

Query: 42  FVNSPHYDN-LYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           ++N+P  +  LY  L  +   +++  L++  +D+ I  +G+ I V   +    R   A  
Sbjct: 27  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTIDKSGN-ILVDEKVETLVRDKFADL 85

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA----LEGEIARTIQSISGIVAARVHI 156
           G+P +  +    L    +S G +   +++         LE EI ++  +   I +A V +
Sbjct: 86  GIPYTGQDGNDILL--NSSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TIDSASVQL 141

Query: 157 VMPDMGSFRKIGAR 170
            +P+  S  +  ++
Sbjct: 142 TLPESSSIFEEASQ 155


>gi|330903893|gb|EGH34465.1| flagellar MS-ring protein [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 100

 Score = 74.3 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 3/99 (3%)

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKK--EEQSNYEINTKSIATTHDNYKLERLSIA 360
                ++ N   + D     P        K  +   N+E++     T     +L RLS+A
Sbjct: 2   PGQPLLDANGQQIMDPATGQPALAPYPADKRVQSTKNFELDRSISHTKQQQGRLTRLSVA 61

Query: 361 VVVNK-GRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           VVV+   +     G  +      + LA   ++V  A G 
Sbjct: 62  VVVDDMVKTNAANGEVSRAPWSAADLARFTRLVQDAVGF 100


>gi|226326448|ref|ZP_03801966.1| hypothetical protein PROPEN_00296 [Proteus penneri ATCC 35198]
 gi|225205231|gb|EEG87585.1| hypothetical protein PROPEN_00296 [Proteus penneri ATCC 35198]
          Length = 248

 Score = 74.3 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 73/183 (39%), Gaps = 8/183 (4%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSM 89
           ++LF              L   L      ++   L +  I    +  G     +SV    
Sbjct: 1   MLLFCLVSLLTGCKEQSLL-TGLNQRQATQVQAVLQKHQITSTQTALGKGLFDVSVKKED 59

Query: 90  VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149
           V  A   L    LPS++     ++F    +   +   ++   + A+E  + +++ +I  +
Sbjct: 60  VAVAIQILEQYQLPSNTRVEITQIFPSD-ALVSSPQAEKARLISAIEQRLEQSLLTIESV 118

Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDV 207
           + ARVHI  P +    +I   P AS +I   +  P   +  E +R  +  +  +++  ++
Sbjct: 119 IDARVHISYP-ISPSERIIPPPHASAIIFYEDSVPDAEQLGEDVRAFIHNSFNDMNEDNI 177

Query: 208 TVL 210
           TVL
Sbjct: 178 TVL 180


>gi|161502085|ref|YP_001569197.1| hypothetical protein SARI_00102 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863432|gb|ABX20055.1| hypothetical protein SARI_00102 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 252

 Score = 73.1 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 67/168 (39%), Gaps = 12/168 (7%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF-RISDN--GSSISVPSSMVGKARIHLAAQGLPSSSS 107
           L   L+    N +   L   NI+  +I     G SI+V       A   +    LP    
Sbjct: 23  LLKGLDQEQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAAVYWIKTYQLPPRPR 82

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
               ++F    S   +   ++     A+E  + +++Q++ G+++ARVHI         + 
Sbjct: 83  VEIAQMFPAD-SLVSSPRAEKARLYSAIEQRLEQSLQTMEGVLSARVHISYDIDA--GEN 139

Query: 168 GARP-----TASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
           G  P     +A  +    +P  +     I+  +  +  ++D  +++V+
Sbjct: 140 GRPPKPVHLSALAVYERGSPLAH-QISDIKRFLKNSFADVDYDNISVV 186


>gi|197249815|ref|YP_002147769.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|197213518|gb|ACH50915.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
          Length = 252

 Score = 72.7 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 67/168 (39%), Gaps = 12/168 (7%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF-RISDN--GSSISVPSSMVGKARIHLAAQGLPSSSS 107
           L   L+    N +   L   NI+  +I     G SI+V       A   +    LP    
Sbjct: 23  LLKGLDQEQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAAVYWIKTYQLPPRPR 82

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
               ++F    S   +   ++     A+E  + +++Q++ G+++ARVHI         + 
Sbjct: 83  VEIAQMFPAD-SLVSSPRAEKARLYSAIEQRLEQSLQTMEGVLSARVHISYDIDA--GEN 139

Query: 168 GARP-----TASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
           G  P     +A  +    +P  +     I+  +  +  ++D  +++V+
Sbjct: 140 GRPPKPVHLSALAVYERGSPLAH-QISDIKRFLKNSFADVDYDNISVV 186


>gi|16766177|ref|NP_461792.1| needle complex inner membrane lipoprotein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|56414823|ref|YP_151898.1| pathogenicity island 1 effector protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62181373|ref|YP_217790.1| cell invasion protein; lipoprotein, may link inner and outer
           membranes [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161615781|ref|YP_001589746.1| hypothetical protein SPAB_03572 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167550282|ref|ZP_02344039.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|167994182|ref|ZP_02575274.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168230939|ref|ZP_02655997.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|168235909|ref|ZP_02660967.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168242607|ref|ZP_02667539.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|168262008|ref|ZP_02683981.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|168463996|ref|ZP_02697913.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|168820434|ref|ZP_02832434.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|194446696|ref|YP_002042114.1| type III secretion apparatus lipoprotein YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194451609|ref|YP_002046834.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|194472324|ref|ZP_03078308.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194737310|ref|YP_002115824.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197262326|ref|ZP_03162400.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197363751|ref|YP_002143388.1| pathogenicity island 1 effector protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|198244869|ref|YP_002216842.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|200388692|ref|ZP_03215304.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|204928364|ref|ZP_03219564.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205353815|ref|YP_002227616.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207858134|ref|YP_002244785.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224584649|ref|YP_002638447.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238909638|ref|ZP_04653475.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|1172615|sp|P41786|PRGK_SALTY RecName: Full=Lipoprotein prgK; Flags: Precursor
 gi|717103|gb|AAB60191.1| PrgK protein [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|16421418|gb|AAL21751.1| cell invasion protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56129080|gb|AAV78586.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62129006|gb|AAX66709.1| cell invasion protein; lipoprotein, may link inner and outer
           membranes [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161365145|gb|ABX68913.1| hypothetical protein SPAB_03572 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194405359|gb|ACF65581.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194409913|gb|ACF70132.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|194458688|gb|EDX47527.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194712812|gb|ACF92033.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|195633338|gb|EDX51752.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197095228|emb|CAR60779.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|197240581|gb|EDY23201.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197290699|gb|EDY30053.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|197939385|gb|ACH76718.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|199605790|gb|EDZ04335.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|204322686|gb|EDZ07883.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205273596|emb|CAR38583.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205324687|gb|EDZ12526.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205327955|gb|EDZ14719.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205334572|gb|EDZ21336.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|205338256|gb|EDZ25020.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|205342832|gb|EDZ29596.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|205349248|gb|EDZ35879.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|206709937|emb|CAR34291.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224469176|gb|ACN47006.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|261248007|emb|CBG25840.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267994999|gb|ACY89884.1| needle complex inner membrane lipoprotein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301159431|emb|CBW18949.1| type III secretion system apparatus [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312913889|dbj|BAJ37863.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320087276|emb|CBY97041.1| Lipoprotein prgK Flags: Precursor [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321223420|gb|EFX48486.1| Type III secretion bridge between inner and outermembrane
           lipoprotein YscJ,HrcJ,EscJ, PscJ [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322614310|gb|EFY11241.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322621625|gb|EFY18478.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322624486|gb|EFY21319.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322628817|gb|EFY25600.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633456|gb|EFY30198.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635968|gb|EFY32676.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322639676|gb|EFY36361.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322646857|gb|EFY43360.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650626|gb|EFY47031.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654761|gb|EFY51080.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658981|gb|EFY55234.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664452|gb|EFY60646.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668299|gb|EFY64456.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673721|gb|EFY69822.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677782|gb|EFY73845.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681388|gb|EFY77420.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322683790|gb|EFY79800.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322715857|gb|EFZ07428.1| needle complex inner membrane lipoprotein [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
 gi|323131223|gb|ADX18653.1| needle complex inner membrane lipoprotein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323193821|gb|EFZ79024.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323200291|gb|EFZ85373.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323203206|gb|EFZ88235.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323205547|gb|EFZ90512.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210058|gb|EFZ94961.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323216361|gb|EGA01088.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221108|gb|EGA05539.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226930|gb|EGA11112.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323230786|gb|EGA14904.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323234863|gb|EGA18949.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323238902|gb|EGA22952.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323241602|gb|EGA25633.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323248251|gb|EGA32187.1| type III secretion system lipoprotein PrgK [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323251165|gb|EGA35038.1| type III secretion system lipoprotein PrgK [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323256049|gb|EGA39787.1| type III secretion system lipoprotein PrgK [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323263183|gb|EGA46721.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323264313|gb|EGA47819.1| type III secretion system lipoprotein PrgK [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323271139|gb|EGA54567.1| type III secretion system lipoprotein PrgK [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326624602|gb|EGE30947.1| needle complex inner membrane lipoprotein [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326628923|gb|EGE35266.1| needle complex inner membrane lipoprotein [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
 gi|332989743|gb|AEF08726.1| needle complex inner membrane lipoprotein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 252

 Score = 72.7 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 67/168 (39%), Gaps = 12/168 (7%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF-RISDN--GSSISVPSSMVGKARIHLAAQGLPSSSS 107
           L   L+    N +   L   NI+  +I     G SI+V       A   +    LP    
Sbjct: 23  LLKGLDQEQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAAVYWIKTYQLPPRPR 82

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
               ++F    S   +   ++     A+E  + +++Q++ G+++ARVHI         + 
Sbjct: 83  VEIAQMFPAD-SLVSSPRAEKARLYSAIEQRLEQSLQTMEGVLSARVHISYDIDA--GEN 139

Query: 168 GARP-----TASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
           G  P     +A  +    +P  +     I+  +  +  ++D  +++V+
Sbjct: 140 GRPPKPVHLSALAVYERGSPLAH-QISDIKRFLKNSFADVDYDNISVV 186


>gi|218988933|gb|ACL13596.1| lipoprotein PrgK [Salmonella enterica subsp. salamae serovar Sofia]
          Length = 252

 Score = 72.7 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 67/168 (39%), Gaps = 12/168 (7%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF-RISDN--GSSISVPSSMVGKARIHLAAQGLPSSSS 107
           L   L+    N +   L   NI+  +I     G SI+V       A   +    LP    
Sbjct: 23  LLKGLDQEQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAAVYWIKTYQLPPRPR 82

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
               ++F    S   +   ++     A+E  + +++Q++ G+++ARVHI         + 
Sbjct: 83  VEIAQMFPAD-SLVSSPRAEKARLYSAIEQRLEQSLQTMEGVLSARVHISYDIDA--GEN 139

Query: 168 GARP-----TASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
           G  P     +A  +    +P  +     I+  +  +  ++D  +++V+
Sbjct: 140 GRPPKPVHLSALAVYERGSPLAH-QISDIKRFLKNSFADVDYDNISVV 186


>gi|238756004|ref|ZP_04617329.1| Type III secretion system apparatus lipoprotein [Yersinia ruckeri
           ATCC 29473]
 gi|238705793|gb|EEP98185.1| Type III secretion system apparatus lipoprotein [Yersinia ruckeri
           ATCC 29473]
          Length = 252

 Score = 72.7 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 74/184 (40%), Gaps = 4/184 (2%)

Query: 30  LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVP 86
           ++  +LF  +   + +    NL  +L+    N +   L +  I     +NG    SI+V 
Sbjct: 3   IIRALLFAGSTLLLTACDKQNLLTELDQRQSNEVLATLQQNGIQGTKHENGKLGFSINVA 62

Query: 87  SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146
            +    A   L    LPS  +    + F    S   +   +    +  +E  + ++I +I
Sbjct: 63  KNDFIAAVDLLKQYNLPSKDAVEIIQAFPGD-SLVASPQAERTRLLSLIEQRLEQSITTI 121

Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGD 206
            G+V ARVH+  P   + +    +  +S++  A +         I+  +  +  +    +
Sbjct: 122 PGVVNARVHVSYPLSTNTKVTQPQSISSLVTYAGSEDTKILMSKIKLFLKNSFSDSTYDN 181

Query: 207 VTVL 210
           V+V+
Sbjct: 182 VSVV 185


>gi|16761648|ref|NP_457265.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29143132|ref|NP_806474.1| pathogenicity island 1 effector protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213417664|ref|ZP_03350792.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
 gi|213425726|ref|ZP_03358476.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213580253|ref|ZP_03362079.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213650551|ref|ZP_03380604.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213855142|ref|ZP_03383382.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289823852|ref|ZP_06543458.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25317961|pir||AC0849 pathogenicity 1 island effector protein [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503949|emb|CAD05978.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29138765|gb|AAO70334.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 252

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 67/168 (39%), Gaps = 12/168 (7%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF-RISDN--GSSISVPSSMVGKARIHLAAQGLPSSSS 107
           L   L+    N +   L   NI+  +I     G SI+V       A   +    LP    
Sbjct: 23  LLKGLDQEQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAAVYWIKTYQLPPRPR 82

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
               ++F    S   +   ++     A+E  + +++Q++ G+++ARVHI         + 
Sbjct: 83  VEIAQMFPAD-SLVSSPRAEKARLYSAIEQRLEQSLQTMEGVLSARVHISYDIDA--GEN 139

Query: 168 GARP-----TASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
           G  P     +A  +    +P  +     I+  +  +  ++D  +++V+
Sbjct: 140 GRPPKPVHLSALAVYERGSPLAH-QISDIKRFLKNSFADVDYDNISVV 186


>gi|284007659|emb|CBA73356.1| type III secretion system lipoprotein YscJ,HrcJ,EscJ,PscJ
           [Arsenophonus nasoniae]
          Length = 237

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 67/166 (40%), Gaps = 7/166 (4%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGLPSS 105
           + L   L ++  N +   L + +I    S  G     I+V    +  A   L    LPS 
Sbjct: 20  EALLNSLTITQANEVLAVLQKHHITVSKSAQGKGLYKINVAKEDLPAAVQLLQEYQLPSP 79

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
                 +LF    +   +  +++   +  +E  + +++ ++  I  ARVH+  P   +  
Sbjct: 80  ERLEISQLFPAD-ALVNSPQIEKARLISGIEQRLEQSLMALDKIADARVHLSYPIAAN-N 137

Query: 166 KIGARPTASVMI--RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209
           +  A   ASV++     N  + +    I+  +  A+  L+   +TV
Sbjct: 138 RSQAPMKASVIVFYHDENQDIDELKLGIKAFIKNAISELEPQYITV 183


>gi|12056610|gb|AAG47968.1|AF312695_8 FliF [Pseudomonas fluorescens]
          Length = 97

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 30/73 (41%)

Query: 8  LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
          L F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  ++   L
Sbjct: 25 LSFLENLSEMTVLRQVGLLVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDAKQVMDTL 84

Query: 68 SEANIDFRISDNG 80
          + A+I + +  N 
Sbjct: 85 ASADIPYTVEPNS 97


>gi|293416340|ref|ZP_06658979.1| lipoprotein prgK [Escherichia coli B185]
 gi|291431696|gb|EFF04679.1| lipoprotein prgK [Escherichia coli B185]
          Length = 250

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 75/195 (38%), Gaps = 18/195 (9%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGLPSSSS 107
           L  +L+    N +   L + NI     DNG    S++V       A   +    LP    
Sbjct: 23  LLQELDQYQANEVISLLQQHNIRADKIDNGKKGFSVTVAEPDFTAAVYWVKVYELPPRPR 82

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
               ++F    +   +   ++     A+E  + +++Q++ GI++ARVHI           
Sbjct: 83  VEIAQMFPAD-ALVSSPRAEKARLYSAIEQRLEQSLQTLPGIISARVHISYDID---AGE 138

Query: 168 GARPTASVMIRAI-----NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM 222
             RP+  V + A+        +      I+  +  +  N++  +++V+      L+    
Sbjct: 139 SGRPSVPVHLSALAVYERGTPLGLQISDIKRFLKNSFANVEYDNISVV------LSERRE 192

Query: 223 ERNILGKSLSIVQAI 237
           +   +  S S  Q I
Sbjct: 193 DEFRVSASRSSRQDI 207


>gi|213027569|ref|ZP_03342016.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 204

 Score = 70.8 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 66/167 (39%), Gaps = 10/167 (5%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF-RISDN--GSSISVPSSMVGKARIHLAAQGLPSSSS 107
           L   L+    N +   L   NI+  +I     G SI+V       A   +    LP    
Sbjct: 23  LLKGLDQEQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAAVYWIKTYQLPPRPR 82

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
               ++F    S   +   ++     A+E  + +++Q++ G+++ARVHI         + 
Sbjct: 83  VEIAQMFPAD-SLVSSPRAEKARLYSAIEQRLEQSLQTMEGVLSARVHISYDIDA--GEN 139

Query: 168 GARPT----ASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
           G  P     +++ +      +      I+  +  +  ++D  +++V+
Sbjct: 140 GRPPKPVHLSALAVYERGSPLAHQISDIKRFLKNSFADVDYDNISVV 186


>gi|213160801|ref|ZP_03346511.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 233

 Score = 70.8 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 66/167 (39%), Gaps = 10/167 (5%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF-RISDN--GSSISVPSSMVGKARIHLAAQGLPSSSS 107
           L   L+    N +   L   NI+  +I     G SI+V       A   +    LP    
Sbjct: 4   LLKGLDQEQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAAVYWIKTYQLPPRPR 63

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
               ++F    S   +   ++     A+E  + +++Q++ G+++ARVHI         + 
Sbjct: 64  VEIAQMFPAD-SLVSSPRAEKARLYSAIEQRLEQSLQTMEGVLSARVHISYDIDA--GEN 120

Query: 168 GARPT----ASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
           G  P     +++ +      +      I+  +  +  ++D  +++V+
Sbjct: 121 GRPPKPVHLSALAVYERGSPLAHQISDIKRFLKNSFADVDYDNISVV 167


>gi|123443740|ref|YP_001007711.1| type III secretion system apparatus lipoprotein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|8996043|gb|AAF82342.1|AF005744_21 YsaJ [Yersinia enterocolitica]
 gi|122090701|emb|CAL13577.1| type III secretion system apparatus lipoprotein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 247

 Score = 70.4 bits (171), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 71/180 (39%), Gaps = 4/180 (2%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG---SSISVPSSMV 90
            L ++A + ++      L  +L     N +   L E  ++    +NG   +SI V  S  
Sbjct: 7   FLVISAIWLLSGCDNQVLLTELSQRQSNEVLAVLQENGVEGTRRENGKLGNSIKVARSDF 66

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   L    LPS  S    + F    S   +   +    +  +E  + +++ +I G+V
Sbjct: 67  VTAVDLLRLYNLPSKESVEIIQAFPGD-SLVASPQAERSRLLSLIEQRLEQSLLTIPGVV 125

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
            ARVH+  P   + R    +  +S++  A N         I+  +  +       +V+V+
Sbjct: 126 NARVHVSYPLNSNSRVKEPQQVSSLVTYAGNEDPKLMMSKIKLFLTNSFAEASFDNVSVV 185


>gi|212711714|ref|ZP_03319842.1| hypothetical protein PROVALCAL_02789 [Providencia alcalifaciens DSM
           30120]
 gi|212685816|gb|EEB45344.1| hypothetical protein PROVALCAL_02789 [Providencia alcalifaciens DSM
           30120]
          Length = 240

 Score = 70.4 bits (171), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 62/165 (37%), Gaps = 4/165 (2%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDF---RISDNGSSISVPSSMVGKARIHLAAQGLPSS 105
             L   L     N +   L E  +D    + S NG SI V  +    A   L    LPS 
Sbjct: 14  QLLLSNLSQRQSNEVLAILQEHGVDANRKQDSKNGDSIRVAPNDFVIAVDLLRQYNLPSK 73

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
                 + F    S   +   +    +  +E  + +++ +I  +V ARVH+  P  G+  
Sbjct: 74  DPVEIIDAFPGD-SLVASPQAERTRLLSLIEQRLEQSLLTIPNVVNARVHVSYPISGNGP 132

Query: 166 KIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
              A+  +S++  + N         I+  +  +       +V+V+
Sbjct: 133 VKQAQKVSSLVTYSGNEDPKVMMNKIKLFLNNSFAETTYDNVSVV 177


>gi|15088593|gb|AAK84104.1|AF369954_2 YsaJ [Yersinia enterocolitica]
          Length = 247

 Score = 70.4 bits (171), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 71/180 (39%), Gaps = 4/180 (2%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG---SSISVPSSMV 90
            L ++A + ++      L  +L     N +   L E  ++    +NG   +SI V  S  
Sbjct: 7   FLVISAIWLLSGCDNQVLLTELSQRQSNEVLAVLQENGVEGTRRENGKLGNSIKVARSDF 66

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   L    LPS  S    + F    S   +   +    +  +E  + +++ +I G+V
Sbjct: 67  VTAVDLLRLYNLPSQESVEHIQAFPGD-SLVASPQAERSRLLSLIEQRLEQSLLTIPGVV 125

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
            ARVH+  P   + R    +  +S++  A N         I+  +  +       +V+V+
Sbjct: 126 NARVHVSYPLNSNSRVKEPQQVSSLVTYAGNEDPKLMMSKIKLFLTNSFAEASFDNVSVV 185


>gi|82524583|ref|YP_406178.1| MxiJ [Shigella dysenteriae Sd197]
 gi|81243981|gb|ABB64690.1| MxiJ [Shigella dysenteriae Sd197]
          Length = 241

 Score = 70.1 bits (170), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 4/163 (2%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGLPSSSS 107
           L   L     N I   L   NI  R  D G    S+ V       A   +    LP+   
Sbjct: 24  LISNLSQRQANEIISVLERHNISARKVDGGKQGISVQVEKGTFASAVDLMRMYDLPNPER 83

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
               ++F    S   +   ++     A+E  + +++ SI G+++A++H+           
Sbjct: 84  VDISQMFPTD-SLVSSPRAEKARLYSAIEQRLEQSLVSIGGVISAKIHVSYDLDDKNISS 142

Query: 168 GARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
                + + I             I+  +     ++   +++V+
Sbjct: 143 KPMHISVIAIYDSPKESELLVSNIKRFLKNTFSDVKYENISVI 185


>gi|238898342|ref|YP_002924023.1| type III needle complex inner membrane lipoprotein [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229466101|gb|ACQ67875.1| type III needle complex inner membrane lipoprotein [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 249

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 70/185 (37%), Gaps = 11/185 (5%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSM 89
           ++ F      V     + L   L+    N +S  L   NI  + +D    G SISV    
Sbjct: 7   VICFCFIGLLVGCKEQNLL-KGLDQQQANEVSALLLRHNIPAQKTDQLKEGYSISVNPED 65

Query: 90  VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149
              A   +    LPS       ++F    S   +   ++      +E  + +++QS+ GI
Sbjct: 66  FVAAVGLIKTYNLPSKPRVEISQMFPGD-SLISSPRQEKARLYSGIEQRLEQSLQSMRGI 124

Query: 150 VAARVHIVMPDMGSFRKIGARPTA---SVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMG 205
           V ARVH+         + G +  A   S ++              ++  +  +  +LD  
Sbjct: 125 VTARVHVSYDLDS--GEGGRKTPAIHLSSLVNHDQGMDTSLLIGDVKRFLKNSFNDLDYE 182

Query: 206 DVTVL 210
           +++V+
Sbjct: 183 NISVI 187


>gi|32307032|gb|AAP79002.1| MxiJ [Shigella flexneri]
          Length = 241

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 57/165 (34%), Gaps = 4/165 (2%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGLPSS 105
           + L   L     N I   L   NI  R  D G    S+ V       A   +    LP+ 
Sbjct: 22  EELISNLSQRQANEIISVLERHNITARKVDGGKQGISVQVEKGTFASAVDLMRMYDLPNP 81

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
                 ++F    S   +   ++     A+E  + +++ SI G+++A++H+         
Sbjct: 82  ERVDISQMFPTD-SLVSSPRAEKARLYSAIEQRLEQSLVSIGGVISAKIHVSYDLEEKNI 140

Query: 166 KIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
                  + + I             I+  +     ++   +++V+
Sbjct: 141 SSKPMHISVIAIYDSPKESELLVSNIKRFLKNTFSDVKYENISVI 185


>gi|326634131|pdb|2Y9J|Y Chain Y, Three-Dimensional Model Of Salmonella's Needle Complex At
           Subnanometer Resolution
 gi|326634132|pdb|2Y9J|Z Chain Z, Three-Dimensional Model Of Salmonella's Needle Complex At
           Subnanometer Resolution
 gi|326634133|pdb|2Y9J|AA Chain a, Three-Dimensional Model Of Salmonella's Needle Complex At
           Subnanometer Resolution
 gi|326634134|pdb|2Y9J|BB Chain b, Three-Dimensional Model Of Salmonella's Needle Complex At
           Subnanometer Resolution
 gi|326634135|pdb|2Y9J|CC Chain c, Three-Dimensional Model Of Salmonella's Needle Complex At
           Subnanometer Resolution
 gi|326634136|pdb|2Y9J|DD Chain d, Three-Dimensional Model Of Salmonella's Needle Complex At
           Subnanometer Resolution
 gi|326634137|pdb|2Y9J|EE Chain e, Three-Dimensional Model Of Salmonella's Needle Complex At
           Subnanometer Resolution
 gi|326634138|pdb|2Y9J|FF Chain f, Three-Dimensional Model Of Salmonella's Needle Complex At
           Subnanometer Resolution
 gi|326634139|pdb|2Y9J|GG Chain g, Three-Dimensional Model Of Salmonella's Needle Complex At
           Subnanometer Resolution
 gi|326634140|pdb|2Y9J|HH Chain h, Three-Dimensional Model Of Salmonella's Needle Complex At
           Subnanometer Resolution
 gi|326634141|pdb|2Y9J|II Chain i, Three-Dimensional Model Of Salmonella's Needle Complex At
           Subnanometer Resolution
 gi|326634142|pdb|2Y9J|JJ Chain j, Three-Dimensional Model Of Salmonella's Needle Complex At
           Subnanometer Resolution
 gi|326634143|pdb|2Y9J|KK Chain k, Three-Dimensional Model Of Salmonella's Needle Complex At
           Subnanometer Resolution
 gi|326634144|pdb|2Y9J|LL Chain l, Three-Dimensional Model Of Salmonella's Needle Complex At
           Subnanometer Resolution
 gi|326634145|pdb|2Y9J|MM Chain m, Three-Dimensional Model Of Salmonella's Needle Complex At
           Subnanometer Resolution
 gi|326634146|pdb|2Y9J|NN Chain n, Three-Dimensional Model Of Salmonella's Needle Complex At
           Subnanometer Resolution
 gi|326634147|pdb|2Y9J|OO Chain o, Three-Dimensional Model Of Salmonella's Needle Complex At
           Subnanometer Resolution
 gi|326634148|pdb|2Y9J|PP Chain p, Three-Dimensional Model Of Salmonella's Needle Complex At
           Subnanometer Resolution
 gi|326634149|pdb|2Y9J|QQ Chain q, Three-Dimensional Model Of Salmonella's Needle Complex At
           Subnanometer Resolution
 gi|326634150|pdb|2Y9J|RR Chain r, Three-Dimensional Model Of Salmonella's Needle Complex At
           Subnanometer Resolution
 gi|326634151|pdb|2Y9J|SS Chain s, Three-Dimensional Model Of Salmonella's Needle Complex At
           Subnanometer Resolution
 gi|326634152|pdb|2Y9J|TT Chain t, Three-Dimensional Model Of Salmonella's Needle Complex At
           Subnanometer Resolution
 gi|326634153|pdb|2Y9J|UU Chain u, Three-Dimensional Model Of Salmonella's Needle Complex At
           Subnanometer Resolution
 gi|326634154|pdb|2Y9J|VV Chain v, Three-Dimensional Model Of Salmonella's Needle Complex At
           Subnanometer Resolution
          Length = 170

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 66/167 (39%), Gaps = 10/167 (5%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF-RISDN--GSSISVPSSMVGKARIHLAAQGLPSSSS 107
           L   L+    N +   L   NI+  +I     G SI+V       A   +    LP    
Sbjct: 3   LLKGLDQEQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAAVYWIKTYQLPPRPR 62

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
               ++F    S   +   ++     A+E  + +++Q++ G+++ARVHI         + 
Sbjct: 63  VEIAQMFPAD-SLVSSPRAEKARLYSAIEQRLEQSLQTMEGVLSARVHISYDIDA--GEN 119

Query: 168 GARPT----ASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
           G  P     +++ +      +      I+  +  +  ++D  +++V+
Sbjct: 120 GRPPKPVHLSALAVYERGSPLAHQISDIKRFLKNSFADVDYDNISVV 166


>gi|74314938|ref|YP_313356.1| MxiJ [Shigella sonnei Ss046]
 gi|2497731|sp|Q55288|MXIJ_SHISO RecName: Full=Lipoprotein mxiJ; Flags: Precursor
 gi|829066|dbj|BAA09148.1| ORF8 [Shigella sonnei]
 gi|73858415|gb|AAZ91121.1| MxiJ [Shigella sonnei Ss046]
 gi|323166429|gb|EFZ52194.1| hypothetical protein SS53G_3273 [Shigella sonnei 53G]
          Length = 241

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 57/165 (34%), Gaps = 4/165 (2%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGLPSS 105
           + L   L     N I   L   NI  R  D G    S+ V       A   +    LP+ 
Sbjct: 22  EELISNLSQRQANEIISVLERHNITARKVDGGKQGISVQVEKGTFASAVDLMRMYDLPNP 81

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
                 ++F    S   +   ++     A+E  + +++ SI G+++A++H+         
Sbjct: 82  ERVDISQMFPTD-SLVSSPRAEKARLYSAIEQRLEQSLVSIGGVISAKIHVSYDLEEKNI 140

Query: 166 KIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
                  + + I             I+  +     ++   +++V+
Sbjct: 141 SSKPMHISVIAIYDSPKESELLVSNIKRFLKNTFSDVKYENISVI 185


>gi|13449086|ref|NP_085302.1| Type III secretion protein [Shigella flexneri 5a]
 gi|31983564|ref|NP_858272.1| MxiJ, lipoprotein, component of the Mxi-Spa secretion machinery
           [Shigella flexneri 2a str. 301]
 gi|547955|sp|Q06081|MXIJ_SHIFL RecName: Full=Lipoprotein mxiJ; Flags: Precursor
 gi|13310634|gb|AAK18458.1|AF348706_147 Type III secretion protein [Shigella flexneri 5a]
 gi|152767|gb|AAA26532.1| lipoprotein [Shigella flexneri]
 gi|12329083|emb|CAC05814.1| MxiJ, lipoprotein, component of the Mxi-Spa secretion machinery
           [Shigella flexneri]
 gi|18462556|gb|AAL72328.1| MxiJ, lipoprotein, component of the Mxi-Spa secretion machinery
           [Shigella flexneri 2a str. 301]
 gi|281603894|gb|ADA76877.1| MxiJ, lipoprotein, component of the Mxi-Spa secretion machinery
           [Shigella flexneri 2002017]
 gi|333011811|gb|EGK31212.1| hypothetical protein SFK227_5445 [Shigella flexneri K-227]
 gi|333011866|gb|EGK31259.1| hypothetical protein SFK227_5394 [Shigella flexneri K-227]
 gi|333020368|gb|EGK39632.1| hypothetical protein SFK304_1151 [Shigella flexneri K-304]
          Length = 241

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 57/165 (34%), Gaps = 4/165 (2%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGLPSS 105
           + L   L     N I   L   NI  R  D G    S+ V       A   +    LP+ 
Sbjct: 22  EELISNLSQRQANEIISVLERHNITARKVDGGKQGISVQVEKGTFASAVDLMRMYDLPNP 81

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
                 ++F    S   +   ++     A+E  + +++ SI G+++A++H+         
Sbjct: 82  ERVDISQMFPTD-SLVSSPRAEKARLYSAIEQRLEQSLVSIGGVISAKIHVSYDLEEKNI 140

Query: 166 KIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
                  + + I             I+  +     ++   +++V+
Sbjct: 141 SSKPMHISVIAIYDSPKESELLVSNIKRFLKNTFSDVKYENISVI 185


>gi|187734478|ref|YP_001883201.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Shigella boydii CDC 3083-94]
 gi|194435204|ref|ZP_03067432.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Shigella dysenteriae 1012]
 gi|187426974|gb|ACD06249.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Shigella boydii CDC 3083-94]
 gi|194416548|gb|EDX32689.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Shigella dysenteriae 1012]
          Length = 241

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 57/165 (34%), Gaps = 4/165 (2%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGLPSS 105
           + L   L     N I   L   NI  R  D G    S+ V       A   +    LP+ 
Sbjct: 22  EELISNLSQRQANEIISVLERHNITARKVDGGKQGISVQVEKGTFASAVDLMRMYDLPNP 81

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
                 ++F    S   +   ++     A+E  + +++ SI G+++A++H+         
Sbjct: 82  ERVDISQMFPTD-SLVSSPRAEKARLYSAIEQRLEQSLVSIGGVISAKIHVSYDLEEKNI 140

Query: 166 KIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
                  + + I             I+  +     ++   +++V+
Sbjct: 141 SSKPMHISVIAIYDSPKESELLVSNIKRFLKNTFSDVKYENISVI 185


>gi|157781880|gb|ABV72266.1| FliF [Azospirillum brasilense]
          Length = 77

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 3/80 (3%)

Query: 4  LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
          ++ LLQ  ++   LG  R+  +  V L+ I  F+     +++P  + LY +L+ ++   I
Sbjct: 1  MNNLLQTLRN---LGPARLAAIGGVGLLLIGFFVYLMTRLSTPEMELLYAELQPTEAAAI 57

Query: 64 SVALSEANIDFRISDNGSSI 83
          +  L EA + F +   G+ I
Sbjct: 58 AKKLEEAKVPFTVDKTGTKI 77


>gi|238796123|ref|ZP_04639634.1| Type III secretion system apparatus lipoprotein [Yersinia
           mollaretii ATCC 43969]
 gi|238720068|gb|EEQ11873.1| Type III secretion system apparatus lipoprotein [Yersinia
           mollaretii ATCC 43969]
          Length = 251

 Score = 68.5 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 69/180 (38%), Gaps = 4/180 (2%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG---SSISVPSSMV 90
            L +A    ++      L  +L     N +   L E  ++    DNG   SSI V  S  
Sbjct: 7   FLIIAVLGLLSGCDNQTLLTELSQRQGNEVLAVLQENGVEGTRRDNGKLGSSIKVARSDF 66

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   L    LPS       + F    S   +   +    +  +E  + +++ +I G+V
Sbjct: 67  VTAVDLLRLYNLPSKDPVEIIQAFPGD-SLVASPQAERSRLLSLIEQRLQQSLLTIPGVV 125

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
            ARVH+  P   + R    +  +S++  A N    +    I+  +  +       +V+V+
Sbjct: 126 NARVHVSYPLNSNNRVKQLQQVSSLVTYAGNEDPKQMMNKIKLFLTNSFTETSYDNVSVV 185


>gi|301027465|ref|ZP_07190802.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 69-1]
 gi|300394973|gb|EFJ78511.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 69-1]
          Length = 244

 Score = 68.5 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 63/173 (36%), Gaps = 14/173 (8%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGLP 103
               L   L+    N +   L   NI+    D G +   I V  +    A   L    LP
Sbjct: 17  KQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIYVEPTDFASAVDWLKIYNLP 76

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
               +         ++   +   ++     A+E  + ++++ + GIV++RVH+       
Sbjct: 77  -GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIVSSRVHVSYDVDT- 134

Query: 164 FRKIGARPTA-----SVM-IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
                +  TA     SV+ +   + +       I+  +  +  ++   +++V+
Sbjct: 135 ---GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVV 184


>gi|218706353|ref|YP_002413872.1| putative type III secretion system lipoprotein EprK [Escherichia
           coli UMN026]
 gi|293406346|ref|ZP_06650272.1| lipoprotein prgK [Escherichia coli FVEC1412]
 gi|300898076|ref|ZP_07116444.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 198-1]
 gi|218433450|emb|CAR14352.1| Putative Type III secretion system lipoprotein EprK [Escherichia
           coli UMN026]
 gi|291426352|gb|EFE99384.1| lipoprotein prgK [Escherichia coli FVEC1412]
 gi|300358214|gb|EFJ74084.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 198-1]
          Length = 244

 Score = 68.1 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 63/173 (36%), Gaps = 14/173 (8%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGLP 103
               L   L+    N +   L   NI+    D G +   I V  +    A   L    LP
Sbjct: 17  KQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIYVEPTDFASAVDWLKIYNLP 76

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
               +         ++   +   ++     A+E  + ++++ + GIV++RVH+       
Sbjct: 77  -GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIVSSRVHVSYDVDT- 134

Query: 164 FRKIGARPTA-----SVM-IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
                +  TA     SV+ +   + +       I+  +  +  ++   +++V+
Sbjct: 135 ---GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVV 184


>gi|293449177|ref|ZP_06663598.1| type III secretion protein SctJ [Escherichia coli B088]
 gi|291322267|gb|EFE61696.1| type III secretion protein SctJ [Escherichia coli B088]
          Length = 244

 Score = 68.1 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 60/169 (35%), Gaps = 6/169 (3%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGLP 103
               L   L+    N +   L   NI+    D G +   I V  +    A   L    LP
Sbjct: 17  KQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIFVEPTDFASAVDWLKIYNLP 76

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
               +         ++   +   ++     A+E  + ++++ + GI+++RVH+       
Sbjct: 77  -GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIISSRVHVSYDVDNG 135

Query: 164 FRKIGARPTASVMIRAINPSVYKSAEA--IRHLVAAAVPNLDMGDVTVL 210
                A P    ++      +    +   I+  +  +  ++   +++V+
Sbjct: 136 DSGKTALPIHISVLTVYEKDINPEIKINDIKRFIVNSSASVQYENISVV 184


>gi|62085059|gb|AAX62924.1| putative type III secretion apparatus lipoprotein [Escherichia
           coli]
 gi|323966646|gb|EGB62078.1| YscJ/HrcJ family protein type III secretion lipoprotein
           [Escherichia coli M863]
 gi|323978527|gb|EGB73609.1| YscJ/HrcJ family protein type III secretion lipoprotein
           [Escherichia coli TW10509]
 gi|327251607|gb|EGE63293.1| hypothetical protein ECSTEC7V_3457 [Escherichia coli STEC_7v]
          Length = 244

 Score = 68.1 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 63/173 (36%), Gaps = 14/173 (8%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGLP 103
               L   L+    N +   L   NI+    D G +   I V  +    A   L    LP
Sbjct: 17  KQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIYVEPTDFASAVDWLKIYNLP 76

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
               +         ++   +   ++     A+E  + ++++ + GIV++RVH+       
Sbjct: 77  -GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIVSSRVHVSYDVDT- 134

Query: 164 FRKIGARPTA-----SVM-IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
                +  TA     SV+ +   + +       I+  +  +  ++   +++V+
Sbjct: 135 ---GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVV 184


>gi|254575119|gb|ACT68020.1| type III secretion apparatus [Pantoea stewartii subsp. stewartii
           DC283]
          Length = 255

 Score = 68.1 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 74/186 (39%), Gaps = 12/186 (6%)

Query: 32  PIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN---GSSISVPSS 88
            + + + A           L+  L     N++   L + N+          G +++V  S
Sbjct: 8   ALAVVLFALMLSACNDEKLLF-NLTQEQANQVLAVLQQHNVSASKEGTLKAGYTVAVNKS 66

Query: 89  MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISG 148
               A   +    LP S+     + F +  +   +   ++   +   E  + ++++ I+ 
Sbjct: 67  ESTAALSIINQYQLPWSADVQIAQAFPE-GALVTSPNAEQARVISLQEQRLEQSLRMIAQ 125

Query: 149 IVAARVHIVMPDMGSFRKIGAR-PTASV-MIRAINPSVYKS--AEAIRHLVAAAVPNLDM 204
           +V ARVH+  P   +F    +R PT  V +I      +  +     I+HL+  +  +L  
Sbjct: 126 VVNARVHVSYP---AFNNDSSRTPTGHVGVIITYKGEIDDNLFIPQIKHLIKNSFYDLRY 182

Query: 205 GDVTVL 210
            +++V+
Sbjct: 183 ENISVV 188


>gi|167566213|ref|ZP_02359129.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia oklahomensis EO147]
 gi|167573323|ref|ZP_02366197.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia oklahomensis C6786]
          Length = 298

 Score = 68.1 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 63/169 (37%), Gaps = 6/169 (3%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLP 103
           +   L   L     N +   L   N+  R   +   G ++SV       A   L    LP
Sbjct: 20  NQQELLKNLTEQQANDVVAVLQAHNLAVRKEDLGKTGYAVSVEQVDFPTAVDLLRQYNLP 79

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMG 162
           S +     + F    S   +   ++   + A+E  + + + ++  +V+ARV I  P    
Sbjct: 80  SQARVQIGQAFPAD-SLVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQISYPLKPS 138

Query: 163 SFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
              K  AR   + ++   N          ++  V  +  N+D  D++V+
Sbjct: 139 DSGKPDARMHVAALLTYRNDVNQDILVSEVKRFVKNSFTNIDYDDISVI 187


>gi|331664417|ref|ZP_08365323.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli TA143]
 gi|284922795|emb|CBG35883.1| type III secretion system protein [Escherichia coli 042]
 gi|331058348|gb|EGI30329.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli TA143]
          Length = 244

 Score = 68.1 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 63/173 (36%), Gaps = 14/173 (8%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGLP 103
               L   L+    N +   L   NI+    D G +   I V  +    A   L    LP
Sbjct: 17  KQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIYVEPTDFASAVDWLKIYNLP 76

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
               +         ++   +   ++     A+E  + ++++ + GIV++RVH+       
Sbjct: 77  -GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIVSSRVHVSYDVDT- 134

Query: 164 FRKIGARPTA-----SVM-IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
                +  TA     SV+ +   + +       I+  +  +  ++   +++V+
Sbjct: 135 ---GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVV 184


>gi|331654341|ref|ZP_08355341.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli M718]
 gi|331047723|gb|EGI19800.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli M718]
          Length = 244

 Score = 67.7 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 68/196 (34%), Gaps = 6/196 (3%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGLP 103
               L   L+    N +   L   NI+    D G +   I V  +    A   L    LP
Sbjct: 17  KQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIFVEPTDFASAVDWLKIYNLP 76

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
               +         ++   +   ++     A+E  + ++++ + GIV++RVH+       
Sbjct: 77  -GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIVSSRVHVSYDVDTG 135

Query: 164 FRKIGARPTASVMIRAINPSVYKSAEA--IRHLVAAAVPNLDMGDVTVLDSTGKLLTANE 221
                A P    ++      +    +   I+  +  +  ++   +++V+ S  + +    
Sbjct: 136 DSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVVLSKRRDIIEQA 195

Query: 222 MERNILGKSLSIVQAI 237
               I     +  +A+
Sbjct: 196 PTYEISEPVFAYEKAM 211


>gi|15803380|ref|NP_289413.1| putative lipoprotein of type III secretion apparatus [Escherichia
           coli O157:H7 EDL933]
 gi|15832970|ref|NP_311743.1| EprK [Escherichia coli O157:H7 str. Sakai]
 gi|168747678|ref|ZP_02772700.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. EC4113]
 gi|168753782|ref|ZP_02778789.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. EC4401]
 gi|168759972|ref|ZP_02784979.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. EC4501]
 gi|168766837|ref|ZP_02791844.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. EC4486]
 gi|168775721|ref|ZP_02800728.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. EC4196]
 gi|168778858|ref|ZP_02803865.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. EC4076]
 gi|168785690|ref|ZP_02810697.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. EC869]
 gi|168799977|ref|ZP_02824984.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. EC508]
 gi|195936464|ref|ZP_03081846.1| EprK [Escherichia coli O157:H7 str. EC4024]
 gi|208808993|ref|ZP_03251330.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. EC4206]
 gi|208814265|ref|ZP_03255594.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. EC4045]
 gi|208819767|ref|ZP_03260087.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. EC4042]
 gi|209398387|ref|YP_002272324.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. EC4115]
 gi|217327850|ref|ZP_03443933.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. TW14588]
 gi|254794800|ref|YP_003079637.1| putative lipoprotein of type III secretion apparatus [Escherichia
           coli O157:H7 str. TW14359]
 gi|256024641|ref|ZP_05438506.1| putative lipoprotein of type III secretion apparatus [Escherichia
           sp. 4_1_40B]
 gi|261226159|ref|ZP_05940440.1| putative lipoprotein of type III secretion apparatus [Escherichia
           coli O157:H7 str. FRIK2000]
 gi|261256586|ref|ZP_05949119.1| putative lipoprotein of type III secretion apparatus [Escherichia
           coli O157:H7 str. FRIK966]
 gi|300950603|ref|ZP_07164505.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 116-1]
 gi|300958184|ref|ZP_07170338.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 175-1]
 gi|301026133|ref|ZP_07189607.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 196-1]
 gi|301643809|ref|ZP_07243846.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 146-1]
 gi|307139541|ref|ZP_07498897.1| putative lipoprotein of type III secretion apparatus [Escherichia
           coli H736]
 gi|331643541|ref|ZP_08344672.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli H736]
 gi|12517355|gb|AAG57972.1|AE005514_9 putative lipoprotein of type III secretion apparatus [Escherichia
           coli O157:H7 str. EDL933]
 gi|13363188|dbj|BAB37139.1| type III secretion system lipoprotein precursor EprK [Escherichia
           coli O157:H7 str. Sakai]
 gi|62085081|gb|AAX62944.1| putative type III secretion apparatus lipoprotein [Escherichia
           coli]
 gi|187768733|gb|EDU32577.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. EC4196]
 gi|188017908|gb|EDU56030.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. EC4113]
 gi|189003460|gb|EDU72446.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. EC4076]
 gi|189358523|gb|EDU76942.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. EC4401]
 gi|189363691|gb|EDU82110.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. EC4486]
 gi|189369428|gb|EDU87844.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. EC4501]
 gi|189374196|gb|EDU92612.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. EC869]
 gi|189377636|gb|EDU96052.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. EC508]
 gi|208728794|gb|EDZ78395.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. EC4206]
 gi|208735542|gb|EDZ84229.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. EC4045]
 gi|208739890|gb|EDZ87572.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. EC4042]
 gi|209159787|gb|ACI37220.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. EC4115]
 gi|217320217|gb|EEC28642.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. TW14588]
 gi|254594200|gb|ACT73561.1| putative lipoprotein of type III secretion apparatus [Escherichia
           coli O157:H7 str. TW14359]
 gi|299879828|gb|EFI88039.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 196-1]
 gi|300315136|gb|EFJ64920.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 175-1]
 gi|300450083|gb|EFK13703.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 116-1]
 gi|301077842|gb|EFK92648.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 146-1]
 gi|320189189|gb|EFW63848.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC1212]
 gi|326339070|gb|EGD62885.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. 1044]
 gi|326343049|gb|EGD66817.1| type III secretion system BasJ [Escherichia coli O157:H7 str. 1125]
 gi|331037012|gb|EGI09236.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli H736]
          Length = 244

 Score = 67.7 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 60/169 (35%), Gaps = 6/169 (3%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGLP 103
               L   L+    N +   L   NI+    D G +   I V  +    A   L    LP
Sbjct: 17  KQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIYVEPTDFASAVDWLKIYNLP 76

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
               +         ++   +   ++     A+E  + ++++ + GIV++RVH+       
Sbjct: 77  -GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIVSSRVHVSYDVDTG 135

Query: 164 FRKIGARPTASVMIRAINPSVYKSAEA--IRHLVAAAVPNLDMGDVTVL 210
                A P    ++      +    +   I+  +  +  ++   +++V+
Sbjct: 136 DSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVV 184


>gi|323935787|gb|EGB32090.1| YscJ/HrcJ family protein type III secretion lipoprotein
           [Escherichia coli E1520]
          Length = 244

 Score = 67.7 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 60/169 (35%), Gaps = 6/169 (3%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGLP 103
               L   L+    N +   L   NI+    D G +   I V  +    A   L    LP
Sbjct: 17  KQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIYVEPTDFASAVDWLKIYNLP 76

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
               +         ++   +   ++     A+E  + ++++ + GIV++RVH+       
Sbjct: 77  -GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIVSSRVHVSYDVDTG 135

Query: 164 FRKIGARPTASVMIRAINPSVYKSAEA--IRHLVAAAVPNLDMGDVTVL 210
                A P    ++      +    +   I+  +  +  ++   +++V+
Sbjct: 136 DSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVV 184


>gi|268592388|ref|ZP_06126609.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Providencia rettgeri DSM 1131]
 gi|291312174|gb|EFE52627.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Providencia rettgeri DSM 1131]
          Length = 249

 Score = 67.7 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 73/190 (38%), Gaps = 10/190 (5%)

Query: 24  ILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF---RISDNG 80
           IL   IL+  + F+AA           L  +L     N +   L E  ++    + + NG
Sbjct: 3   ILKKFILIGFISFLAAC------DNQLLLSQLSQRQSNEVLAILQEHGVEATRKQDNKNG 56

Query: 81  SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140
            SI V  S    A   L    LPS       + F    S   +   +    +  +E  + 
Sbjct: 57  DSIRVQPSDFVIAVDLLRQYNLPSKEPIEIIQAFPGD-SLVASPQAERTRLLSLIEQRLE 115

Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVP 200
           +++ +I  I+ ARVH+  P  G+      +  +S++  + +         I+  +  +  
Sbjct: 116 QSLLTIPDIINARVHVSYPLNGNNPTKQIQNVSSLVTYSGSEDPQMMMHKIKLFLTNSFA 175

Query: 201 NLDMGDVTVL 210
             +  +V+V+
Sbjct: 176 EANYDNVSVV 185


>gi|186976174|gb|ACD01056.1| EprK [Escherichia coli O157:H7 str. EC10]
          Length = 244

 Score = 67.4 bits (163), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 63/173 (36%), Gaps = 14/173 (8%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGLP 103
               L   L+    N +   L   NI+    D G    SI V  +    A   L    LP
Sbjct: 17  KQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKIGFSIYVEPTDFASAVDWLKIYNLP 76

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
               +         ++   +   ++     A+E  + ++++ + GIV++RVH+       
Sbjct: 77  -GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIVSSRVHVSYDVDT- 134

Query: 164 FRKIGARPTA-----SVM-IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
                +  TA     SV+ +   + +       I+  +  +  ++   +++V+
Sbjct: 135 ---GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVV 184


>gi|293412203|ref|ZP_06654926.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291468974|gb|EFF11465.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 244

 Score = 67.4 bits (163), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 63/173 (36%), Gaps = 14/173 (8%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGLP 103
               L   L+    N +   L   NI+    D G    SI V  +    A   L    LP
Sbjct: 17  KQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKIGFSIYVEPTDFASAVDWLKIYNLP 76

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
               +         ++   +   ++     A+E  + ++++ + GIV++RVH+       
Sbjct: 77  -GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIVSSRVHVSYDVDT- 134

Query: 164 FRKIGARPTA-----SVM-IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
                +  TA     SV+ +   + +       I+  +  +  ++   +++V+
Sbjct: 135 ---GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVV 184


>gi|293416099|ref|ZP_06658739.1| type III secretion protein SctJ [Escherichia coli B185]
 gi|291432288|gb|EFF05270.1| type III secretion protein SctJ [Escherichia coli B185]
          Length = 244

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 68/196 (34%), Gaps = 6/196 (3%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGLP 103
               L   L+    N +   L   NI+    D G +   I V  +    A   L    LP
Sbjct: 17  KQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIFVEPTDFASAVDWLKIYNLP 76

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
               +         ++   +   ++     A+E  + ++++ + GIV++RVH+       
Sbjct: 77  -GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIVSSRVHVSYDVDTG 135

Query: 164 FRKIGARPTASVMIRAINPSVYKSAEA--IRHLVAAAVPNLDMGDVTVLDSTGKLLTANE 221
                A P    ++      +    +   I+  +  +  ++   +++V+ S  + +    
Sbjct: 136 DSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVVLSKRRDIIEQA 195

Query: 222 MERNILGKSLSIVQAI 237
               I     +  +A+
Sbjct: 196 PTNEISEPVFAYDKAM 211


>gi|309703212|emb|CBJ02547.1| type III secretion system protein [Escherichia coli ETEC H10407]
          Length = 244

 Score = 67.0 bits (162), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 63/173 (36%), Gaps = 14/173 (8%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGLP 103
               L   L+    N +   L   +I+    D G +   I V  +    A   L    LP
Sbjct: 17  KQQELLNHLDQQQANDVLAVLQRHHINAEKKDQGKTGFSIYVEPTDFASAVDWLKIYNLP 76

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
               +         ++   +   ++     A+E  + ++++ + GIV++RVH+       
Sbjct: 77  -GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIVSSRVHVSYDVDT- 134

Query: 164 FRKIGARPTA-----SVM-IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
                +  TA     SV+ +   + +       I+  +  +  ++   +++V+
Sbjct: 135 ---GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVV 184


>gi|157157566|ref|YP_001464192.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           E24377A]
 gi|191166008|ref|ZP_03027844.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           B7A]
 gi|209920309|ref|YP_002294393.1| putative lipoprotein of type III secretion apparatus [Escherichia
           coli SE11]
 gi|218555405|ref|YP_002388318.1| putative Type III secretion system lipoprotein EprK [Escherichia
           coli IAI1]
 gi|218696453|ref|YP_002404120.1| Putative Type III secretion system lipoprotein EprK [Escherichia
           coli 55989]
 gi|256019349|ref|ZP_05433214.1| Putative Type III secretion system lipoprotein EprK [Shigella sp.
           D9]
 gi|260856970|ref|YP_003230861.1| type III secretion system lipoprotein precursor EprK [Escherichia
           coli O26:H11 str. 11368]
 gi|260869536|ref|YP_003235938.1| type III secretion system lipoprotein precursor EprK [Escherichia
           coli O111:H- str. 11128]
 gi|300815719|ref|ZP_07095943.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 107-1]
 gi|300820651|ref|ZP_07100802.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 119-7]
 gi|300906610|ref|ZP_07124301.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 84-1]
 gi|301302998|ref|ZP_07209125.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 124-1]
 gi|309793911|ref|ZP_07688336.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 145-7]
 gi|331678837|ref|ZP_08379511.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli H591]
 gi|332280462|ref|ZP_08392875.1| type III secretion apparatus lipoprotein EprK [Shigella sp. D9]
 gi|71388150|gb|AAZ31284.1| EprK [Escherichia coli]
 gi|157079596|gb|ABV19304.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           E24377A]
 gi|190903956|gb|EDV63669.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           B7A]
 gi|209913568|dbj|BAG78642.1| putative lipoprotein of type III secretion apparatus [Escherichia
           coli SE11]
 gi|218353185|emb|CAU99067.1| Putative Type III secretion system lipoprotein EprK [Escherichia
           coli 55989]
 gi|218362173|emb|CAQ99786.1| Putative Type III secretion system lipoprotein EprK [Escherichia
           coli IAI1]
 gi|257755619|dbj|BAI27121.1| type III secretion system lipoprotein precursor EprK [Escherichia
           coli O26:H11 str. 11368]
 gi|257765892|dbj|BAI37387.1| type III secretion system lipoprotein precursor EprK [Escherichia
           coli O111:H- str. 11128]
 gi|300401649|gb|EFJ85187.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 84-1]
 gi|300526915|gb|EFK47984.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 119-7]
 gi|300531648|gb|EFK52710.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 107-1]
 gi|300841662|gb|EFK69422.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 124-1]
 gi|308122318|gb|EFO59580.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 145-7]
 gi|315256723|gb|EFU36691.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 85-1]
 gi|320202498|gb|EFW77068.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli EC4100B]
 gi|323154782|gb|EFZ40979.1| hypothetical protein ECEPECA14_3340 [Escherichia coli EPECa14]
 gi|323180296|gb|EFZ65848.1| hypothetical protein ECOK1180_0977 [Escherichia coli 1180]
 gi|323183404|gb|EFZ68801.1| hypothetical protein ECOK1357_3182 [Escherichia coli 1357]
 gi|324021198|gb|EGB90417.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 117-3]
 gi|324119892|gb|EGC13771.1| YscJ/HrcJ family protein type III secretion lipoprotein
           [Escherichia coli E1167]
 gi|331073667|gb|EGI44988.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli H591]
 gi|332102814|gb|EGJ06160.1| type III secretion apparatus lipoprotein EprK [Shigella sp. D9]
          Length = 244

 Score = 67.0 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 60/169 (35%), Gaps = 6/169 (3%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGLP 103
               L   L+    N +   L   NI+    D G +   I V  +    A   L    LP
Sbjct: 17  KQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIFVEPTDFASAVDWLKIYNLP 76

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
               +         ++   +   ++     A+E  + ++++ + GI+++RVH+       
Sbjct: 77  -GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIISSRVHVSYDVDNG 135

Query: 164 FRKIGARPTASVMIRAINPSVYKSAEA--IRHLVAAAVPNLDMGDVTVL 210
                A P    ++      +    +   I+  +  +  ++   +++V+
Sbjct: 136 DSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSSASVQYENISVV 184


>gi|330903685|gb|EGH34257.1| flagellar MS-ring protein [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 122

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 37/118 (31%), Gaps = 3/118 (2%)

Query: 279 DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK--EEQS 336
            P             A  +          ++ N   + D     P        K  +   
Sbjct: 4   QPPGPATAPQTAGAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPADKRVQSTK 63

Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNK-GRLTEVLGRSADQGKIDSYLAEINKIVS 393
           N+E++     T     +L RLS+AVVV+   +     G  +      + LA   ++V 
Sbjct: 64  NFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVSRAPWSAADLARFTRLVR 121


>gi|183600567|ref|ZP_02962060.1| hypothetical protein PROSTU_04153 [Providencia stuartii ATCC 25827]
 gi|188019844|gb|EDU57884.1| hypothetical protein PROSTU_04153 [Providencia stuartii ATCC 25827]
          Length = 253

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 65/181 (35%), Gaps = 5/181 (2%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF---RISDNGSSISVPSSM 89
           ++L           +   L   L     N +   L E  ++    + +  G SI V    
Sbjct: 7   LILITFVGLLAGCDN-QLLLSHLSQRQSNEVLAILQEHGVEASRKQDNKQGDSIKVSPRD 65

Query: 90  VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149
              A   L    LPS       + F    S   +   +    +  +E  + +++ +I  +
Sbjct: 66  FVIAVDLLRQYNLPSKDPVEIIQAFPGD-SLVASPQAERTRLLSLIEQRLEQSLLTIPDV 124

Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209
           V ARVH+  P  G+      +  +S++  + N         I+  + ++    +  +V+V
Sbjct: 125 VNARVHVSYPLNGNTPTKQTQKVSSLVTYSGNEDPKLMMNKIKLFLTSSFAETNYDNVSV 184

Query: 210 L 210
           +
Sbjct: 185 V 185


>gi|238759401|ref|ZP_04620566.1| Type III secretion system apparatus lipoprotein [Yersinia aldovae
           ATCC 35236]
 gi|238702428|gb|EEP94980.1| Type III secretion system apparatus lipoprotein [Yersinia aldovae
           ATCC 35236]
          Length = 247

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 65/165 (39%), Gaps = 4/165 (2%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDNG---SSISVPSSMVGKARIHLAAQGLPSS 105
             L  +L     N +   L E  ++    +NG   +SI V  S    A   L    LPS 
Sbjct: 22  QVLLTELSQRQSNEVLAVLQENGVEGTRRENGKLGNSIKVARSDFVTAVDLLRLYNLPSK 81

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
            S    + F    S   +   +    +  +E  + +++ +I G+V ARVH+  P  G+ R
Sbjct: 82  ESVEIIQAFPGD-SLVASPQAERSRLLSLIEQRLEQSLLTIPGVVNARVHVSYPLSGNNR 140

Query: 166 KIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
               +  +S++  A N         I+  +  +       +V+V+
Sbjct: 141 VKQPQQVSSLVTYAGNEDPKLMMSKIKLFLTNSFAEASFDNVSVV 185


>gi|312972926|ref|ZP_07787099.1| conserved hypothetical protein [Escherichia coli 1827-70]
 gi|62085073|gb|AAX62937.1| putative type III secretion apparatus lipoprotein [Escherichia
           coli]
 gi|310332868|gb|EFQ00082.1| conserved hypothetical protein [Escherichia coli 1827-70]
 gi|323941625|gb|EGB37805.1| YscJ/HrcJ family protein type III secretion lipoprotein
           [Escherichia coli E482]
 gi|332344751|gb|AEE58085.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 244

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 63/173 (36%), Gaps = 14/173 (8%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGLP 103
               L   L+    N +   L   NI+    D G +   I V  +    A   L    LP
Sbjct: 17  KQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIYVEPTDFASAVDWLKIYNLP 76

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
               +         ++   +   ++     A+E  + ++++ + GI+++RVH+       
Sbjct: 77  -GKPDIQISQMFPADALVSSPRAEKARLYSAIEQWLEQSLKIMDGIISSRVHVSYDVDN- 134

Query: 164 FRKIGARPTA-----SVM-IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
                +  TA     SV+ +   + +       I+  +  +  ++   +++V+
Sbjct: 135 ---GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVV 184


>gi|167577420|ref|ZP_02370294.1| type III secretion system BasJ [Burkholderia thailandensis TXDOH]
          Length = 234

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 6/169 (3%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLP 103
           +   L   L     N +   L   ++  R   +   G ++SV  +    A   L    LP
Sbjct: 20  NQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNLP 79

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMG 162
           S +     + F    S   +   ++   + A+E  + + + ++  +V+ARV +  P    
Sbjct: 80  SQARVQIAQAFPAD-SLVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKPS 138

Query: 163 SFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
              K  AR   + ++   N          ++  V  +  N+D  D++V+
Sbjct: 139 DSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187


>gi|323173915|gb|EFZ59544.1| hypothetical protein ECLT68_2234 [Escherichia coli LT-68]
          Length = 244

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 62/173 (35%), Gaps = 14/173 (8%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGLP 103
               L   L+    N +   L   NI+    D G +   I V  +    A   L    LP
Sbjct: 17  KQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIFVEPTDFASAVDWLKIYNLP 76

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
               +         ++   +   ++     A+E  + ++++ + GI+++RVH+       
Sbjct: 77  -GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIISSRVHVSYDVDN- 134

Query: 164 FRKIGARPTA-----SVM-IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
                +  TA     SV+ +   + +       I+  +  +  ++   ++ V+
Sbjct: 135 ---GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENIYVV 184


>gi|323211177|gb|EFZ96024.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556152]
          Length = 230

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 53/140 (37%), Gaps = 3/140 (2%)

Query: 75  RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134
           +  ++G ++ V  S    A   L   G P     +  ++F       ++   ++      
Sbjct: 30  KQEEDGVTLRVEQSQFINAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFL 88

Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRH 193
            E  I   +  + G++ A+V I +P         +  + +V I+       ++    I+ 
Sbjct: 89  KEQRIEGMLSQMEGVINAKVTIALPTYDE-GSNASPSSVAVFIKYSPQVNMEAFRVKIKD 147

Query: 194 LVAAAVPNLDMGDVTVLDST 213
           L+  ++P L    +++L   
Sbjct: 148 LIEMSIPGLQYSKISILMQP 167


>gi|83716456|ref|YP_439020.1| type III secretion system BasJ [Burkholderia thailandensis E264]
 gi|257142128|ref|ZP_05590390.1| type III secretion system BasJ [Burkholderia thailandensis E264]
 gi|83650281|gb|ABC34345.1| type III secretion system BasJ [Burkholderia thailandensis E264]
          Length = 315

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 6/169 (3%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLP 103
           +   L   L     N +   L   ++  R   +   G ++SV  +    A   L    LP
Sbjct: 20  NQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNLP 79

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMG 162
           S +     + F    S   +   ++   + A+E  + + + ++  +V+ARV +  P    
Sbjct: 80  SQARVQIAQAFPAD-SLVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKPS 138

Query: 163 SFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
              K  AR   + ++   N          ++  V  +  N+D  D++V+
Sbjct: 139 DSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187


>gi|53716312|ref|YP_106138.1| type III secretion system BasJ [Burkholderia mallei ATCC 23344]
 gi|124381716|ref|YP_001025850.1| type III secretion system BasJ [Burkholderia mallei NCTC 10229]
 gi|126447771|ref|YP_001077934.1| type III secretion system BasJ [Burkholderia mallei NCTC 10247]
 gi|52422282|gb|AAU45852.1| type III secretion system BasJ [Burkholderia mallei ATCC 23344]
 gi|126240625|gb|ABO03737.1| type III secretion system BasJ [Burkholderia mallei NCTC 10247]
 gi|261826463|gb|ABN00251.2| type III secretion system BasJ [Burkholderia mallei NCTC 10229]
          Length = 316

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 6/169 (3%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLP 103
           +   L   L     N +   L   ++  R   +   G ++SV  +    A   L    LP
Sbjct: 20  NQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNLP 79

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMG 162
           S +     + F    S   +   ++   + A+E  + + + ++  +V+ARV +  P    
Sbjct: 80  SQARVQIAQAFPAD-SLVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKPS 138

Query: 163 SFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
              K  AR   + ++   N          ++  V  +  N+D  D++V+
Sbjct: 139 DSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187


>gi|217425204|ref|ZP_03456699.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 576]
 gi|217391809|gb|EEC31836.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 576]
          Length = 315

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 6/169 (3%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLP 103
           +   L   L     N +   L   ++  R   +   G ++SV  +    A   L    LP
Sbjct: 20  NQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNLP 79

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMG 162
           S +     + F    S   +   ++   + A+E  + + + ++  +V+ARV +  P    
Sbjct: 80  SQARVQIAQAFPAD-SLVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKPS 138

Query: 163 SFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
              K  AR   + ++   N          ++  V  +  N+D  D++V+
Sbjct: 139 DSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187


>gi|134281957|ref|ZP_01768663.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 305]
 gi|134246486|gb|EBA46574.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 305]
          Length = 316

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 6/169 (3%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLP 103
           +   L   L     N +   L   ++  R   +   G ++SV  +    A   L    LP
Sbjct: 20  NQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNLP 79

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMG 162
           S +     + F    S   +   ++   + A+E  + + + ++  +V+ARV +  P    
Sbjct: 80  SQARVQIAQAFPAD-SLVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKPS 138

Query: 163 SFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
              K  AR   + ++   N          ++  V  +  N+D  D++V+
Sbjct: 139 DSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187


>gi|76819532|ref|YP_335750.1| Type III secretion system protein [Burkholderia pseudomallei 1710b]
 gi|254264263|ref|ZP_04955128.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 1710a]
 gi|76584005|gb|ABA53479.1| Type III secretion system protein [Burkholderia pseudomallei 1710b]
 gi|254215265|gb|EET04650.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 1710a]
          Length = 315

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 6/169 (3%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLP 103
           +   L   L     N +   L   ++  R   +   G ++SV  +    A   L    LP
Sbjct: 20  NQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNLP 79

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMG 162
           S +     + F    S   +   ++   + A+E  + + + ++  +V+ARV +  P    
Sbjct: 80  SQARVQIAQAFPAD-SLVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKPS 138

Query: 163 SFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
              K  AR   + ++   N          ++  V  +  N+D  D++V+
Sbjct: 139 DSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187


>gi|53722571|ref|YP_111556.1| Type III secretion system protein [Burkholderia pseudomallei
           K96243]
 gi|126456880|ref|YP_001076127.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Burkholderia pseudomallei 1106a]
 gi|254186868|ref|ZP_04893384.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|254193641|ref|ZP_04900073.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei S13]
 gi|254301444|ref|ZP_04968888.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 406e]
 gi|52212985|emb|CAH39023.1| Type III secretion system protein [Burkholderia pseudomallei
           K96243]
 gi|126230648|gb|ABN94061.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 1106a]
 gi|157810759|gb|EDO87929.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 406e]
 gi|157934552|gb|EDO90222.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|169650392|gb|EDS83085.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei S13]
          Length = 315

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 6/169 (3%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLP 103
           +   L   L     N +   L   ++  R   +   G ++SV  +    A   L    LP
Sbjct: 20  NQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNLP 79

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMG 162
           S +     + F    S   +   ++   + A+E  + + + ++  +V+ARV +  P    
Sbjct: 80  SQARVQIAQAFPAD-SLVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKPS 138

Query: 163 SFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
              K  AR   + ++   N          ++  V  +  N+D  D++V+
Sbjct: 139 DSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187


>gi|167615572|ref|ZP_02384207.1| type III secretion system BasJ [Burkholderia thailandensis Bt4]
          Length = 235

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 6/169 (3%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLP 103
           +   L   L     N +   L   ++  R   +   G ++SV  +    A   L    LP
Sbjct: 20  NQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNLP 79

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMG 162
           S +     + F    S   +   ++   + A+E  + + + ++  +V+ARV +  P    
Sbjct: 80  SQARVQIAQAFPAD-SLVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKPS 138

Query: 163 SFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
              K  AR   + ++   N          ++  V  +  N+D  D++V+
Sbjct: 139 DSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187


>gi|167908415|ref|ZP_02495620.1| type III secretion system BasJ [Burkholderia pseudomallei NCTC
           13177]
          Length = 233

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 6/169 (3%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLP 103
           +   L   L     N +   L   ++  R   +   G ++SV  +    A   L    LP
Sbjct: 20  NQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNLP 79

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMG 162
           S +     + F    S   +   ++   + A+E  + + + ++  +V+ARV +  P    
Sbjct: 80  SQARVQIAQAFPAD-SLVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKPS 138

Query: 163 SFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
              K  AR   + ++   N          ++  V  +  N+D  D++V+
Sbjct: 139 DSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187


>gi|167820398|ref|ZP_02452078.1| type III secretion system BasJ [Burkholderia pseudomallei 91]
          Length = 226

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 6/169 (3%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLP 103
           +   L   L     N +   L   ++  R   +   G ++SV  +    A   L    LP
Sbjct: 20  NQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNLP 79

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMG 162
           S +     + F    S   +   ++   + A+E  + + + ++  +V+ARV +  P    
Sbjct: 80  SQARVQIAQAFPAD-SLVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKPS 138

Query: 163 SFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
              K  AR   + ++   N          ++  V  +  N+D  D++V+
Sbjct: 139 DSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187


>gi|167743223|ref|ZP_02415997.1| type III secretion system BasJ [Burkholderia pseudomallei 14]
          Length = 225

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 6/169 (3%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLP 103
           +   L   L     N +   L   ++  R   +   G ++SV  +    A   L    LP
Sbjct: 20  NQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNLP 79

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMG 162
           S +     + F    S   +   ++   + A+E  + + + ++  +V+ARV +  P    
Sbjct: 80  SQARVQIAQAFPAD-SLVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKPS 138

Query: 163 SFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
              K  AR   + ++   N          ++  V  +  N+D  D++V+
Sbjct: 139 DSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187


>gi|34497875|ref|NP_902090.1| cell invasion protein [Chromobacterium violaceum ATCC 12472]
 gi|34103731|gb|AAQ60092.1| cell invasion protein [Chromobacterium violaceum ATCC 12472]
          Length = 242

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 69/169 (40%), Gaps = 6/169 (3%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGLP 103
              +L   L+    N +   L   NI+   +D G +   I+V  +    A   L A  LP
Sbjct: 19  QQKDLLKGLDQQQANEVIAVLQRHNIEADKADRGKAGFSIAVAPADFAAAVDWLRAYDLP 78

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
           S       ++F    S   +   ++     A+E  + +++Q++ GI++ARVH+       
Sbjct: 79  SRPRMEVAQMFPAD-SLVSSPRAEKARLYSAIEQRLEQSLQTMDGILSARVHVSYDLDSG 137

Query: 164 FRKIGARP--TASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
                ++P   +++ +   +         I+  +  +   +D  +++V+
Sbjct: 138 EAGRASQPMHISALAVYDRDVDAAAMINNIKRFLKNSFAEVDYDNISVV 186


>gi|300936210|ref|ZP_07151146.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 21-1]
 gi|300458667|gb|EFK22160.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 21-1]
          Length = 244

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 63/173 (36%), Gaps = 14/173 (8%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGLP 103
               L   L+    N +   L   NI+    D G    SI V  +    A   L    LP
Sbjct: 17  KQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKIGFSIYVEPTDFASAVDWLKIYNLP 76

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
               +         ++   +   ++     A++  + ++++ + GIV++RVH+       
Sbjct: 77  -GKPDIQISQMFPADALVSSPRAEKARLYSAIKQRLEQSLKIMDGIVSSRVHVSYDVDT- 134

Query: 164 FRKIGARPTA-----SVM-IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
                +  TA     SV+ +   + +       I+  +  +  ++   +++V+
Sbjct: 135 ---GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVV 184


>gi|167898828|ref|ZP_02486229.1| type III secretion system BasJ [Burkholderia pseudomallei 7894]
          Length = 232

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 6/169 (3%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLP 103
           +   L   L     N +   L   ++  R   +   G ++SV  +    A   L    LP
Sbjct: 20  NQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNLP 79

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMG 162
           S +     + F    S   +   ++   + A+E  + + + ++  +V+ARV +  P    
Sbjct: 80  SQARVQIAQAFPAD-SLVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKPS 138

Query: 163 SFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
              K  AR   + ++   N          ++  V  +  N+D  D++V+
Sbjct: 139 DSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187


>gi|167828770|ref|ZP_02460241.1| type III secretion system BasJ [Burkholderia pseudomallei 9]
          Length = 230

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 6/169 (3%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLP 103
           +   L   L     N +   L   ++  R   +   G ++SV  +    A   L    LP
Sbjct: 20  NQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNLP 79

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMG 162
           S +     + F    S   +   ++   + A+E  + + + ++  +V+ARV +  P    
Sbjct: 80  SQARVQIAQAFPAD-SLVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKPS 138

Query: 163 SFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
              K  AR   + ++   N          ++  V  +  N+D  D++V+
Sbjct: 139 DSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187


>gi|237507749|ref|ZP_04520464.1| type III secretion system protein [Burkholderia pseudomallei
           MSHR346]
 gi|234999954|gb|EEP49378.1| type III secretion system protein [Burkholderia pseudomallei
           MSHR346]
          Length = 315

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 6/169 (3%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLP 103
           +   L   L     N +   L   ++  R   +   G ++SV  +    A   L    LP
Sbjct: 20  NQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNLP 79

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMG 162
           S +     + F    S   +   ++   + A+E  + + + ++  +V+ARV +  P    
Sbjct: 80  SQARVQIAQAFPAD-SLVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKPS 138

Query: 163 SFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
              K  AR   + ++   N          ++  V  +  N+D  D++V+
Sbjct: 139 DSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187


>gi|226196079|ref|ZP_03791665.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei Pakistan 9]
 gi|225931972|gb|EEH27973.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei Pakistan 9]
          Length = 315

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 6/169 (3%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLP 103
           +   L   L     N +   L   ++  R   +   G ++SV  +    A   L    LP
Sbjct: 20  NQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNLP 79

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMG 162
           S +     + F    S   +   ++   + A+E  + + + ++  +V+ARV +  P    
Sbjct: 80  SQARVQIAQAFPAD-SLVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKPS 138

Query: 163 SFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
              K  AR   + ++   N          ++  V  +  N+D  D++V+
Sbjct: 139 DSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187


>gi|126442499|ref|YP_001063176.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Burkholderia pseudomallei 668]
 gi|126221990|gb|ABN85495.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 668]
          Length = 315

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 6/169 (3%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLP 103
           +   L   L     N +   L   ++  R   +   G ++SV  +    A   L    LP
Sbjct: 20  NQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNLP 79

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMG 162
           S +     + F    S   +   ++   + A+E  + + + ++  +V+ARV +  P    
Sbjct: 80  SQARVQIAQAFPAD-SLVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKPS 138

Query: 163 SFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
              K  AR   + ++   N          ++  V  +  N+D  D++V+
Sbjct: 139 DSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187


>gi|67639417|ref|ZP_00438277.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia mallei GB8 horse 4]
 gi|238519955|gb|EEP83420.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia mallei GB8 horse 4]
          Length = 264

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 6/169 (3%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLP 103
           +   L   L     N +   L   ++  R   +   G ++SV  +    A   L    LP
Sbjct: 20  NQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNLP 79

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMG 162
           S +     + F    S   +   ++   + A+E  + + + ++  +V+ARV +  P    
Sbjct: 80  SQARVQIAQAFPAD-SLVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKPS 138

Query: 163 SFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
              K  AR   + ++   N          ++  V  +  N+D  D++V+
Sbjct: 139 DSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187


>gi|167850225|ref|ZP_02475733.1| type III secretion system BasJ [Burkholderia pseudomallei B7210]
          Length = 233

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 6/169 (3%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLP 103
           +   L   L     N +   L   ++  R   +   G ++SV  +    A   L    LP
Sbjct: 20  NQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNLP 79

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMG 162
           S +     + F    S   +   ++   + A+E  + + + ++  +V+ARV +  P    
Sbjct: 80  SQARVQIAQAFPAD-SLVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKPS 138

Query: 163 SFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
              K  AR   + ++   N          ++  V  +  N+D  D++V+
Sbjct: 139 DSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187


>gi|167923356|ref|ZP_02510447.1| type III secretion system BasJ [Burkholderia pseudomallei BCC215]
          Length = 238

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 6/169 (3%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLP 103
           +   L   L     N +   L   ++  R   +   G ++SV  +    A   L    LP
Sbjct: 20  NQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNLP 79

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMG 162
           S +     + F    S   +   ++   + A+E  + + + ++  +V+ARV +  P    
Sbjct: 80  SQARVQIAQAFPAD-SLVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKPS 138

Query: 163 SFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
              K  AR   + ++   N          ++  V  +  N+D  D++V+
Sbjct: 139 DSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187


>gi|227357604|ref|ZP_03841957.1| type III secretion system protein [Proteus mirabilis ATCC 29906]
 gi|227162314|gb|EEI47318.1| type III secretion system protein [Proteus mirabilis ATCC 29906]
          Length = 250

 Score = 64.3 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 67/165 (40%), Gaps = 7/165 (4%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGLPSSSS 107
           L   L       I   L +  I    +  G     ISV    +G A   L    LP+ S 
Sbjct: 26  LLTNLSQRQATEIQAVLQKHQITSTRTALGKGLFEISVKKENIGIAIQILEEYQLPTISR 85

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
               +LF    +   +   ++   + A+E  + +++ +I  ++ ARVH+  P   +  +I
Sbjct: 86  IEITQLFPSD-ALVSSPQAEKARLISAIEQRLEQSLLTIDHLIDARVHVSYPLSSN-DRI 143

Query: 168 GARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVL 210
              P AS ++   +  +      + +R  +  A  ++D  ++TVL
Sbjct: 144 TPTPHASALVFYEDGMIDSDQLSDDVRAFIHNAFNDMDESNITVL 188


>gi|167724247|ref|ZP_02407483.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei DM98]
 gi|167915509|ref|ZP_02502600.1| type III secretion system BasJ [Burkholderia pseudomallei 112]
          Length = 222

 Score = 64.3 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 6/169 (3%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLP 103
           +   L   L     N +   L   ++  R   +   G ++SV  +    A   L    LP
Sbjct: 20  NQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNLP 79

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMG 162
           S +     + F    S   +   ++   + A+E  + + + ++  +V+ARV +  P    
Sbjct: 80  SQARVQIAQAFPAD-SLVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKPS 138

Query: 163 SFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
              K  AR   + ++   N          ++  V  +  N+D  D++V+
Sbjct: 139 DSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187


>gi|259908651|ref|YP_002649007.1| Type III secretion system [Erwinia pyrifoliae Ep1/96]
 gi|224964273|emb|CAX55780.1| Type III secretion system [Erwinia pyrifoliae Ep1/96]
 gi|283478623|emb|CAY74539.1| Lipoprotein PrgK precursor [Erwinia pyrifoliae DSM 12163]
          Length = 253

 Score = 64.3 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 68/164 (41%), Gaps = 5/164 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRIS---DNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           L   L     N++   L + NI  + S    +G +ISV       A   +    LP S+ 
Sbjct: 26  LLENLTQEQTNQVLAILQQHNISAQKSGAVKDGFAISVSQQENTAALSIINQYQLPWSAE 85

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
               + F + ++   +   ++   +  LE  + ++++ I+ +V ARVHI  P + S +  
Sbjct: 86  IQIAQAFPE-SALVASPNAEQTRVLSLLEQRLGQSLRIINQVVNARVHISYPGVRSDKGN 144

Query: 168 GARPTASVMIRAINP-SVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
                  V+I              I+ L+  ++ ++   +++V+
Sbjct: 145 KTLSHVGVLISYKGEIDDNLFISQIKSLIKNSLSDVRYENISVV 188


>gi|197286530|ref|YP_002152402.1| type III secretion system protein [Proteus mirabilis HI4320]
 gi|194684017|emb|CAR45314.1| type III secretion system protein [Proteus mirabilis HI4320]
          Length = 250

 Score = 64.3 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 67/165 (40%), Gaps = 7/165 (4%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGLPSSSS 107
           L   L       I   L +  I    +  G     ISV    +G A   L    LP+ S 
Sbjct: 26  LLTNLSQRQATEIQAVLQKHQITSTRTALGKGLFEISVKKENIGIAIQILEEYQLPTISR 85

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
               +LF    +   +   ++   + A+E  + +++ +I  ++ ARVH+  P   +  +I
Sbjct: 86  IEITQLFPSD-ALVSSPQAEKARLISAIEQRLEQSLLTIDHLIDARVHVSYPLSSN-DRI 143

Query: 168 GARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVL 210
              P AS ++   +  +      + +R  +  A  ++D  ++TVL
Sbjct: 144 TPTPHASALVFYEDGMIDSDQLSDDVRAFIHNAFNDMDESNITVL 188


>gi|261344604|ref|ZP_05972248.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Providencia rustigianii DSM 4541]
 gi|282567518|gb|EFB73053.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Providencia rustigianii DSM 4541]
          Length = 249

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 59/165 (35%), Gaps = 4/165 (2%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRI---SDNGSSISVPSSMVGKARIHLAAQGLPSS 105
             L   L     N +   L E  I+ +    S NG SI V       +   L    LPS 
Sbjct: 22  QLLLSDLSQRQSNEVLAVLQEHGIEAQRKQDSKNGDSIRVSPDDFVISVDLLRQYNLPSK 81

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
                   F    S   +   +    +  +E  + +++ +I  +V ARVH+  P  G+  
Sbjct: 82  GPVEIIHAFPGD-SLVASPQAERTRVLSLIEQRLEQSLLTIPHVVNARVHVSYPVAGNGP 140

Query: 166 KIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
               +  +S++  + N         I+  +  +       +V+V+
Sbjct: 141 IKPVQKVSSLVTYSGNEDPKVMMNKIKLFLNNSFAETTYDNVSVV 185


>gi|323189407|gb|EFZ74688.1| hypothetical protein ECRN5871_2295 [Escherichia coli RN587/1]
          Length = 134

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 52/130 (40%), Gaps = 7/130 (5%)

Query: 82  SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
           ++SV      +A   L   G P     +  E+    +    +   +        E +I R
Sbjct: 2   TLSVEKEDFVRAITILNNNGFPKKKF-ADIEVIFPPSQLVASPSQENAKINYLKEQDIER 60

Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP-SVYKSAEAIRHLVAAAVP 200
            +  I G++   V + + +           +A+V++ +    ++  S   I++LV  +V 
Sbjct: 61  LLSKIPGVIDCSVSLNVNNN-----ESQPSSAAVLVISSPEVNLAPSVIQIKNLVKNSVD 115

Query: 201 NLDMGDVTVL 210
            L + +++V+
Sbjct: 116 ALKLENISVV 125


>gi|323226606|gb|EGA10809.1| putative pathogenicity island lipoprotein [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
          Length = 134

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 4/129 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90
           I+      FF+ +    +LY  L   + N++   L + +ID      ++G ++ V  S  
Sbjct: 6   IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   L   G P     +  ++F       ++   ++       E  I   +  + G++
Sbjct: 65  INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVI 123

Query: 151 AARVHIVMP 159
            A+V I +P
Sbjct: 124 NAKVTIALP 132


>gi|213618539|ref|ZP_03372365.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-2068]
          Length = 146

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 4/110 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF-RISDN--GSSISVPSSMVGKARIHLAAQGLPSSSS 107
           L   L+    N +   L   NI+  +I     G SI+V       A   +    LP    
Sbjct: 23  LLKGLDQEQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAAVYWIKTYQLPPRPR 82

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
               ++F    S   +   ++     A+E  + +++Q++ G+++ARVHI 
Sbjct: 83  VEIAQMFPAD-SLVSSPRAEKARLYSAIEQRLEQSLQTMEGVLSARVHIS 131


>gi|167840188|ref|ZP_02466872.1| type III secretion system BasJ [Burkholderia thailandensis MSMB43]
          Length = 216

 Score = 63.5 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 64/169 (37%), Gaps = 6/169 (3%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLP 103
           +   L   L     N +   L   ++  R   +   G ++SV  +    A   L    LP
Sbjct: 20  NQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNLP 79

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMG 162
           S +     + F    +   +   ++   + A+E  + + + ++  +V+ARV +  P    
Sbjct: 80  SQARVQIAQAFPAD-ALVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKPS 138

Query: 163 SFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
              K  AR   + ++   N          ++  V  +  N+D  D++V+
Sbjct: 139 DSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187


>gi|213861544|ref|ZP_03386014.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 115

 Score = 63.5 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 37/115 (32%), Gaps = 24/115 (20%)

Query: 266 LNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMP--------- 313
           ++   ++  E  Y P+    ++   S+    SE      P        N P         
Sbjct: 1   MDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIA 60

Query: 314 -----HVSDRKVPLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLER 356
                  + +  P   +  N++        + E SNYE++     T  +   +ER
Sbjct: 61  TPPTNQQNAQNTPQTSTSTNSNNAGPRNTQRNETSNYEVDRTIRHTKMNVGDIER 115


>gi|188534048|ref|YP_001907845.1| Type III secretion system [Erwinia tasmaniensis Et1/99]
 gi|188029090|emb|CAO96959.1| Type III secretion system [Erwinia tasmaniensis Et1/99]
          Length = 259

 Score = 63.5 bits (153), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 69/182 (37%), Gaps = 6/182 (3%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN---GSSISVPSSMV 90
              +   F + +   + L   L     N++   L + NI    S N   G +I V     
Sbjct: 9   FFIILTAFLLAACDNERLLENLTQDQANQVLAILQQHNISANKSGNLKAGYTIQVDEIEN 68

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   ++   LP  +     + F    +   +   +++  +  LE  + +++++I+ +V
Sbjct: 69  TAALSIISQYQLPWPADIQIGQAFP-DGALVASPNAEQVRVLSLLEQRLGQSLRTIAQVV 127

Query: 151 AARVHIVMPD-MGSFRKIGARPTASVMIRAINP-SVYKSAEAIRHLVAAAVPNLDMGDVT 208
            ARVHI  P                V+I      +       ++ L+  ++ ++   +++
Sbjct: 128 NARVHISYPPLKNGMADKTLTNHVGVLISYKGDINQSLFIPQVKSLIKNSLDDIKYENIS 187

Query: 209 VL 210
           V+
Sbjct: 188 VV 189


>gi|310767451|gb|ADP12401.1| Type III secretion system [Erwinia sp. Ejp617]
          Length = 253

 Score = 63.5 bits (153), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 68/164 (41%), Gaps = 5/164 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRIS---DNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           L   L     N++   L + NI  + S    +G +ISV       A   +    LP S+ 
Sbjct: 26  LLENLTQEQTNQVLAILQQHNISAQKSGAVKDGFAISVSQQENTAALSIINQYQLPWSAE 85

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
               + F + ++   +   ++   +  LE  + ++++ I+ +V ARVHI  P + S +  
Sbjct: 86  IQIAQAFPE-SALVASPNAEQTRVLSLLEQRLGQSLRIINQVVNARVHISYPGVRSDKGN 144

Query: 168 GARPTASVMIRAINP-SVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
                  V+I              I+ L+  ++ ++   +++V+
Sbjct: 145 KTLSHVGVLISYKGEIDDNLFISQIKSLIKNSLSDVRYENISVV 188


>gi|330719506|gb|EGG98119.1| Flagellar M-ring protein FliF [gamma proteobacterium IMCC2047]
          Length = 157

 Score = 63.1 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 61/159 (38%), Gaps = 2/159 (1%)

Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455
            G +  RGD +T+ +  F+  ++  +  ++V   +        V   L  L+  +LV  +
Sbjct: 1   MGFDEARGDIVTVINAPFIPVKVEVAEEIEVPLWEQAW-FMKLVKQGLAALLVLILVFVV 59

Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL 515
               ++ L N    +K      +        +       P+  +A+  S     + +  L
Sbjct: 60  IRPIMKSLANNGQQQKALAEATARAQEAAKQAEAMANATPSQAMAMQQSAPGGGAAAMML 119

Query: 516 QSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
                      S   +  +I+ + +R A+++++W +++ 
Sbjct: 120 PGPG-PGAGGMSLSNVQSVIDSDPQRAAQVVKQWVKTDE 157


>gi|85060054|ref|YP_455756.1| type III secretion apparatus [Sodalis glossinidius str.
           'morsitans']
 gi|84780574|dbj|BAE75351.1| type III secretion apparatus [Sodalis glossinidius str.
           'morsitans']
          Length = 253

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 62/167 (37%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGLPSS 105
           + L   L+    N +   L   NI    +D   +G S+++    +  A   L    +PS 
Sbjct: 23  EPLLKGLDQVQANEVITTLQRNNIAAEKADHGKSGYSVAINKVDLPAAVDLLRTYQVPSP 82

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
                 ++F    S   +   ++     A+E  + +++Q + G+V ARVH+         
Sbjct: 83  PRMEIAQMFPGD-SLVSSPRAEKARLYSAIEQRLEQSLQVLEGVVNARVHVSYDIDAGEN 141

Query: 166 KIGARPTASVMIRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTVL 210
               RP     + +  P    +     ++  +  +   +    ++V+
Sbjct: 142 GRAPRPVHLSALVSYEPDSDPALLIGDVKRFLKNSFAEVAYEHISVV 188


>gi|289803181|ref|ZP_06533810.1| putative pathogenicity island lipoprotein [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 210

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 52/138 (37%), Gaps = 3/138 (2%)

Query: 77  SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136
            ++G ++ V  S    A   L   G P     +  ++F       ++   ++       E
Sbjct: 12  EEDGVTLRVEQSQFINAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKE 70

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLV 195
             I   +  + G++ A+V I +P         +  + +V I+       ++    I+ L+
Sbjct: 71  QRIEGMLSQMEGVINAKVTIALPTYDE-GSNASPSSVAVFIKYSPQVNMEAFRVKIKDLI 129

Query: 196 AAAVPNLDMGDVTVLDST 213
             ++P L    +++L   
Sbjct: 130 EMSIPGLQYSKISILMQP 147


>gi|45504782|gb|AAS66872.1| PrgK [Sodalis glossinidius]
          Length = 242

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 4/112 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGLPSS 105
           + L   L+    N +   L   NI    +D   +G S+++    +  A   L    +PS 
Sbjct: 12  EPLLKGLDQVQANEVITTLQRNNIAAEKADHGKSGYSVAINKVDLPAAVDLLRTYQVPSP 71

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
                 ++F    S   +   ++     A+E  + +++Q + G+V ARVH+ 
Sbjct: 72  PRMEIAQMFPGD-SLVSSPRAEKARLYSAIEQRLEQSLQVLEGVVNARVHVS 122


>gi|213426025|ref|ZP_03358775.1| putative pathogenicity island lipoprotein [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
          Length = 205

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 52/138 (37%), Gaps = 3/138 (2%)

Query: 77  SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136
            ++G ++ V  S    A   L   G P     +  ++F       ++   ++       E
Sbjct: 7   EEDGVTLRVEQSQFINAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKE 65

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLV 195
             I   +  + G++ A+V I +P         +  + +V I+       ++    I+ L+
Sbjct: 66  QRIEGMLSQMEGVINAKVTIALPTYDE-GSNASPSSVAVFIKYSPQVNMEAFRVKIKDLI 124

Query: 196 AAAVPNLDMGDVTVLDST 213
             ++P L    +++L   
Sbjct: 125 EMSIPGLQYSKISILMQP 142


>gi|289809530|ref|ZP_06540159.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 176

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 63/158 (39%), Gaps = 10/158 (6%)

Query: 60  VNRISVALSEANIDF-RISDN--GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
            N +   L   NI+  +I     G SI+V       A   +    LP        ++F  
Sbjct: 1   ANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAAVYWIKTYQLPPRPRVEIAQMFPA 60

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPT---- 172
             S   +   ++     A+E  + +++Q++ G+++ARVHI         + G  P     
Sbjct: 61  D-SLVSSPRAEKARLYSAIEQRLEQSLQTMEGVLSARVHISYDIDA--GENGRPPKPVHL 117

Query: 173 ASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
           +++ +      +      I+  +  +  ++D  +++V+
Sbjct: 118 SALAVYERGSPLAHQISDIKRFLKNSFADVDYDNISVV 155


>gi|292487258|ref|YP_003530130.1| lipoprotein PrgK [Erwinia amylovora CFBP1430]
 gi|292900370|ref|YP_003539739.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|291200218|emb|CBJ47346.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|291552677|emb|CBA19722.1| Lipoprotein PrgK precursor [Erwinia amylovora CFBP1430]
          Length = 255

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 72/188 (38%), Gaps = 15/188 (7%)

Query: 32  PIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN---GSSISVPSS 88
            I++ + A         + L   L  S  N +   L + NI    + N   G  I+V  S
Sbjct: 8   SIVILLTAALTSGCND-EKLLDNLTQSQANHVVAILQQHNISAHKNGNLKAGYVITVGQS 66

Query: 89  MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISG 148
               A   +    LP S+     E F    S   +   ++   +   E  + ++++ I+ 
Sbjct: 67  ENTAALSIINQYQLPWSADVQIGEAFPS-GSLVASPNAEQARVLSLQEQRLEQSLRIIAQ 125

Query: 149 IVAARVHIVMPDMGSFRKIGARPTASV----MIRAINPSVYKS--AEAIRHLVAAAVPNL 202
           +V ARVH+  P              SV    ++ +    + ++     I+ L+  ++ ++
Sbjct: 126 VVNARVHLSYPS----FNNDISAKKSVGHVGVLISYKGEIDETMFIPQIKSLIKNSLDDV 181

Query: 203 DMGDVTVL 210
              +++V+
Sbjct: 182 LYENISVV 189


>gi|292488055|ref|YP_003530932.1| lipoprotein PrgK [Erwinia amylovora CFBP1430]
 gi|292899266|ref|YP_003538635.1| type III secretion system lipoprotein [Erwinia amylovora ATCC
           49946]
 gi|291199114|emb|CBJ46227.1| type III secretion system lipoprotein [Erwinia amylovora ATCC
           49946]
 gi|291553479|emb|CBA20524.1| Lipoprotein PrgK precursor [Erwinia amylovora CFBP1430]
          Length = 259

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 76/189 (40%), Gaps = 12/189 (6%)

Query: 30  LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS---DNGSSISVP 86
           LV I   + +   +++ +   L   L     N++   L + NI  + S     G +I++ 
Sbjct: 5   LVHIFFVIISAGLLSACNNQKLLENLTQEQANQVLAILLQHNISAQKSGAAKEGYAINIS 64

Query: 87  SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146
                 A   +    LP S+     + F + ++   +   ++   +  LE  + ++++ I
Sbjct: 65  QQENTVALSIINQYQLPWSADIEIGQAFPE-SALVASPNAEQTRVLSLLEQRLGQSLRVI 123

Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTA----SVMIRAINP-SVYKSAEAIRHLVAAAVPN 201
           + +V ARVHI  P    FR      TA     V+I              I+  +  ++ +
Sbjct: 124 NQVVNARVHISYPG---FRSDKGNKTAVNHVGVLISYKGDIDDNLFISQIKSFIKNSLND 180

Query: 202 LDMGDVTVL 210
           +   +++V+
Sbjct: 181 VRYENISVV 189


>gi|167947313|ref|ZP_02534387.1| flagellar MS-ring protein [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 96

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 16/98 (16%)

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMG--SFRKIGARPTASVMIRAINPSVYK 186
           +   RALEGE+ RTI +++ +  A       +    SF      P+ASV I+       +
Sbjct: 1   MRYQRALEGELTRTIMTLANVETAXGSPGDAENSRCSFASAN-NPSASVTIKFYPGRTLE 59

Query: 187 SAE--------AIRHLVAAAVPNLDMGDVTVLDSTGKL 216
             +         +R L     P L+   VTV+D  G+L
Sbjct: 60  KGQVECDRASGRLRQL-----PELETSRVTVVDQKGRL 92


>gi|170698158|ref|ZP_02889237.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia ambifaria IOP40-10]
 gi|170136923|gb|EDT05172.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia ambifaria IOP40-10]
          Length = 280

 Score = 60.4 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 61/169 (36%), Gaps = 6/169 (3%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGLP 103
           H   L   L  S  N +   L   +I  + S+ G S   + V  +    +   L    LP
Sbjct: 20  HQQALLHGLSESQANEVVALLQAHDITVQKSNQGKSGYMVDVEQTDFPASVDLLEKYNLP 79

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMG 162
           S       + F    S   +   ++   + A+E  + + + ++  +V+ARV +  P    
Sbjct: 80  SPPRVEIDQAFPSD-SLVSSPQAEQARLLSAVEQRLEQNLSAMHDVVSARVQVSYPLQQT 138

Query: 163 SFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
              K       S +I              ++  V  +  ++D  D++V+
Sbjct: 139 DLIKSEPHMHVSALITYRGNVDPAMLVSEVKRFVKNSFASIDYDDISVI 187


>gi|213620660|ref|ZP_03373443.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 63

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 25/58 (43%)

Query: 318 RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS 375
                  +     ++ E SNYE++     T  +   +ERLS+AVVVN   L +     
Sbjct: 1   TSTNSNNAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKPLP 58


>gi|312171366|emb|CBX79625.1| Lipoprotein PrgK precursor [Erwinia amylovora ATCC BAA-2158]
          Length = 255

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 72/188 (38%), Gaps = 15/188 (7%)

Query: 32  PIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN---GSSISVPSS 88
            I++ + A         + L   L  S  N +   L + NI    + N   G  I+V  S
Sbjct: 8   SIVILLTAALTSGCND-EKLLDNLTQSQANHVVAILQQHNISAHKNGNLKAGYVITVGQS 66

Query: 89  MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISG 148
               A   +    LP S+     E F    S   +   ++   +   E  + ++++ I+ 
Sbjct: 67  ENTAALSIINQYQLPWSADVQIGEAFPS-GSLVASPNAEQARVLSLQEQRLEQSLRIIAQ 125

Query: 149 IVAARVHIVMPDMGSFRKIGARPTASV----MIRAINPSVYKS--AEAIRHLVAAAVPNL 202
           +V ARVH+  P              +V    ++ +    + ++     I+ L+  ++ ++
Sbjct: 126 VVNARVHLSYPS----FNNDISAKKTVGHVGVLISYKGEIDETMFIPQIKSLIKNSLDDV 181

Query: 203 DMGDVTVL 210
              +++V+
Sbjct: 182 LYENISVV 189


>gi|312172181|emb|CBX80438.1| Lipoprotein PrgK precursor [Erwinia amylovora ATCC BAA-2158]
          Length = 230

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 77/190 (40%), Gaps = 14/190 (7%)

Query: 30  LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS---DNGSSISVP 86
           LV I   + +   +++ +   L   L     N++   L + NI  + S     G +I++ 
Sbjct: 5   LVHIFFVIISAGLLSACNNQKLLENLTQEQANQVLAILLQHNISAQKSGAAKEGYAINIS 64

Query: 87  SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146
                 A   +    LP S+     + F + ++   +   ++   +  LE  + ++++ I
Sbjct: 65  QQENTVALSIINQYQLPWSADIEIGQAFPE-SALVASPNAEQTRVLSLLEQRLGQSLRVI 123

Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTASV----MIRAINPSVYKS--AEAIRHLVAAAVP 200
           + +V ARVHI  P      +       +V    ++ +    +  +     I+  +  ++ 
Sbjct: 124 NQVVNARVHISYPG----LRSDKGNKTAVNHVGVLISYKGDIDDNLFISQIKSFIKNSLN 179

Query: 201 NLDMGDVTVL 210
           ++   +++V+
Sbjct: 180 DVRYENISVV 189


>gi|270488959|ref|ZP_06206033.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Yersinia pestis KIM D27]
 gi|270337463|gb|EFA48240.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Yersinia pestis KIM D27]
          Length = 157

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 2/118 (1%)

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
           N    +   ++   V   E ++   +  + G++ A V + MP      K     TASV I
Sbjct: 7   NQLVTSPTQEQAKMVFLKEQQLENMLSHMDGVIHADVTVAMPM-SVDGKNPLPHTASVFI 65

Query: 178 RAINPSVYKSAEA-IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIV 234
           +       +S ++ I+ LV  AVP +D   ++V+        +        G   ++ 
Sbjct: 66  KYSPEVNLQSYQSQIKGLVRDAVPGIDYAKISVVMQPANYRFSASEAEQQQGPQTTVQ 123


>gi|13161235|gb|AAK13520.1|AF343975_1 FliF [Treponema denticola ATCC 33520]
          Length = 182

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 64/192 (33%), Gaps = 23/192 (11%)

Query: 363 VNKGRL-TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           VN   +    +     +      + +  KI+  A G ++ R D++++ ++       F  
Sbjct: 13  VNGKYIIKNGVIEREYKPLSAEEIKQAEKIIKDAIGFDASRKDSVSVVNVKVDRTSQFEL 72

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
              +  +   L R    +++  +  +  +L+ F+    +        +++ E   +    
Sbjct: 73  EDKE--YFKALQRQTIFLLS--LAGIALILLFFILYRII--------SREIERRKRLREE 120

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
                + +    M  D    D+         R  + + N+           +M   + E 
Sbjct: 121 ELLRQAQLERERMLYDQQMADADVSMTVEERRRQELQENAI----------NMAREHPED 170

Query: 542 FAKILRKWARSE 553
            A ++R W   E
Sbjct: 171 VALLIRTWLMEE 182


>gi|167949089|ref|ZP_02536163.1| hypothetical protein Epers_22296 [Endoriftia persephone
          'Hot96_1+Hot96_2']
          Length = 86

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 21 RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS-VALSEANIDFRISDN 79
          R L +   I   + L +A   +   P Y  L+  L     +R S   L ++ ID+ +   
Sbjct: 18 RQLAVMVGIAASVALGVAVVLWSQKPSYSVLFGNLAAERCSRRSHQVLQQSGIDYEVDPA 77

Query: 80 GSSI 83
             I
Sbjct: 78 SGLI 81


>gi|89897914|ref|YP_515024.1| type III secretion system protein [Chlamydophila felis Fe/C-56]
 gi|89331286|dbj|BAE80879.1| type III secretion flagellar biosynthesis M-ring protein
           [Chlamydophila felis Fe/C-56]
          Length = 337

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 44/96 (45%), Gaps = 5/96 (5%)

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA--EAI 191
           A + +I R +     + +A V + +P       I   P  SV++       + S+   +I
Sbjct: 70  AKKEQIERDLTMFQSVASATVALSLPTEDDPHII---PQVSVILSTRKNETFSSSLLHSI 126

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL 227
              +++++P L    +T+ D+ G + +  E+ +N L
Sbjct: 127 TDYLSSSIPGLTKEHITLSDNLGNVYSPGEISKNSL 162


>gi|62185477|ref|YP_220262.1| type III secretion system protein [Chlamydophila abortus S26/3]
 gi|62148544|emb|CAH64315.1| putative flagellar-related protein [Chlamydophila abortus S26/3]
          Length = 337

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 41/96 (42%), Gaps = 5/96 (5%)

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV--YKSAEAI 191
           A + ++ R +     +  A V + +P       +   P  SV++ +    +      ++I
Sbjct: 70  AKKEQLERDLTMFQPVAHATVALSLPTEDDPHIV---PQVSVILSSHKNEMFSLPLLQSI 126

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL 227
              ++++VP L    +T+ D+ G   +  E+  N L
Sbjct: 127 TDYLSSSVPGLTKEHITLSDNLGNTYSPGELSTNSL 162


>gi|218680631|ref|ZP_03528528.1| flagellar MS-ring protein [Rhizobium etli CIAT 894]
          Length = 98

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 34/86 (39%)

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
              E  G  +    P + A    LM          + +      +     N  V +  + 
Sbjct: 13  ATPEAAGLELPDFAPAAGAPGGALMDGFGSDFGFDSTEDLLSLGDDDGNFNRRVKEGPER 72

Query: 530 RLLHMIEINEERFAKILRKWARSEIE 555
           +L  M+EINEER AKILRKWA  +  
Sbjct: 73  KLSRMVEINEERAAKILRKWAIDDAA 98


>gi|238764042|ref|ZP_04624997.1| Type III secretion system apparatus lipoprotein [Yersinia
           kristensenii ATCC 33638]
 gi|238697713|gb|EEP90475.1| Type III secretion system apparatus lipoprotein [Yersinia
           kristensenii ATCC 33638]
          Length = 158

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 39/104 (37%), Gaps = 2/104 (1%)

Query: 114 FDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTA 173
               N    +   ++   V   E ++   +  + G++ A V I MP      K      A
Sbjct: 4   LFPSNQLVTSPGQEQAKMVYLKEQQLESMLSHMDGVIQADVTIAMPAPTD-GKSSVPHAA 62

Query: 174 SVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           SV I+        S +  I++L+   +P +D   ++V+      
Sbjct: 63  SVFIKYSPEVNLLSYQPQIKNLIHDGIPGIDFSQISVVMQPANY 106


>gi|207110042|ref|ZP_03244204.1| flagellar MS-ring protein [Helicobacter pylori HPKX_438_CA4C1]
          Length = 74

 Score = 55.4 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 5/70 (7%)

Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-----NLYVKLEVSDVNRISVAL 67
          S +S+ + +I ++A+ +L+  +L     +      Y       L+  L+ SD   I   L
Sbjct: 5  SSSSIKKQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFEGLDSSDNALILQHL 64

Query: 68 SEANIDFRIS 77
           +  I +++S
Sbjct: 65 QQNQIPYKVS 74


>gi|213425005|ref|ZP_03357755.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
          Length = 129

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 51/147 (34%), Gaps = 19/147 (12%)

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
            +  F      ++   ++ F    S     ++ A  +L+  ++   L   A+        
Sbjct: 2   VNSPF---SAVDNTGGELPFWQQQS-FIDQLLAAGRWLLVLVVAWILWRKAVHPQLTRR- 56

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
            ++ +   +          AV   L  ++ +    +NQ           R+ + V  Q  
Sbjct: 57  VEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQ-----------RLGAEVMSQ-- 103

Query: 529 LRLLHMIEINEERFAKILRKWARSEIE 555
            R+  M + +    A ++R+W  ++ E
Sbjct: 104 -RIREMSDNDPRVVALVIRQWMSNDHE 129


>gi|29840662|ref|NP_829768.1| type III secretion system protein [Chlamydophila caviae GPIC]
 gi|29835012|gb|AAP05646.1| secretory protein, YscJ/FliF family [Chlamydophila caviae GPIC]
          Length = 337

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 42/96 (43%), Gaps = 5/96 (5%)

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AI 191
           A + +I R +     +  A V + +P           P  SV++ +    V+ S+   +I
Sbjct: 70  AKKEQIERDLTMFHSVANATVALSLPTED---DPDIIPQVSVILSSHKDEVFSSSLLLSI 126

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL 227
              +++++P L    +T+ D+ G   +  E   ++L
Sbjct: 127 VDYLSSSIPGLAKEHITLSDNLGNTYSPGEFSNSLL 162


>gi|212702997|ref|ZP_03311125.1| hypothetical protein DESPIG_01035 [Desulfovibrio piger ATCC 29098]
 gi|212673585|gb|EEB34068.1| hypothetical protein DESPIG_01035 [Desulfovibrio piger ATCC 29098]
          Length = 341

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 53/150 (35%), Gaps = 18/150 (12%)

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
              +      E  +AR ++  S I   +V +             +P A +++    P   
Sbjct: 50  ESAVALRHEQETLLARQLEQFSCIRQVKVQLA--------PQSWQPGAVIVLEPSRPEAM 101

Query: 186 KSAEAIRHL--VAAAVP-NLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242
             A A+  +  V A VP   D   V V D+ G+ L  +              +  +  +E
Sbjct: 102 PDAAALDRMLDVLALVPDGPDKRHVLVFDTEGRRLYPDRDTDETA------RREQEMALE 155

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQ 272
               + L   L  DN R+ V+  L+   ++
Sbjct: 156 RQALRVLRPLLA-DNGRTEVLVSLDGTGKE 184


>gi|119468195|ref|ZP_01611321.1| flagellar M-ring protein FliF [Alteromonadales bacterium TW-7]
 gi|119448188|gb|EAW29452.1| flagellar M-ring protein FliF [Alteromonadales bacterium TW-7]
          Length = 170

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 2/80 (2%)

Query: 25  LASVILVPIMLFMAARFFVNS--PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           L  V+ + I+  +    + N   P Y  L   + + D  +I+  L +  +++        
Sbjct: 17  LLLVLGISILFAIIILKWANEDSPVYRPLIQDMRLVDSVKIADVLDQERVNYYADVKNHM 76

Query: 83  ISVPSSMVGKARIHLAAQGL 102
           + V       AR+ LA  G+
Sbjct: 77  LYVNQEQSELARVSLAKIGI 96


>gi|82940561|emb|CAJ44290.1| putative flagellar M-ring protein FliF [Rhizobium leguminosarum bv.
           viciae]
          Length = 78

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 503 SSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
            S +D+ S   +     N  V +  + +L  M+EINEER AKILRKWA  +  
Sbjct: 27  DSTEDLLSLGDD-DGNFNRRVKEGPERKLSRMVEINEERAAKILRKWAIDDAA 78


>gi|207109938|ref|ZP_03244100.1| flagellar MS-ring protein [Helicobacter pylori HPKX_438_CA4C1]
          Length = 117

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 9/71 (12%), Positives = 28/71 (39%), Gaps = 1/71 (1%)

Query: 393 SAATGINSRRGDTITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLL 451
             A G N  RGD + +++ +F     + ++ T+    M    +   +    + +++  ++
Sbjct: 2   KQAIGYNQNRGDDVAVSNFEFNPMAPMIDNATLSEKIMHKTQKILGSFTPLIKYILVFIV 61

Query: 452 VTFLGLHALRR 462
           +       +  
Sbjct: 62  LFIFYKKVIVP 72


>gi|329943244|ref|ZP_08292018.1| type III secretion flagellar biosynthesis M-ring protein
           [Chlamydophila psittaci Cal10]
 gi|332287823|ref|YP_004422724.1| type III secretion system protein [Chlamydophila psittaci 6BC]
 gi|313848395|emb|CBY17399.1| putative flagellar-related protein [Chlamydophila psittaci RD1]
 gi|325506922|gb|ADZ18560.1| type III secretion system protein [Chlamydophila psittaci 6BC]
 gi|328814791|gb|EGF84781.1| type III secretion flagellar biosynthesis M-ring protein
           [Chlamydophila psittaci Cal10]
 gi|328915084|gb|AEB55917.1| secretory protein, YscJ/FliF family [Chlamydophila psittaci 6BC]
          Length = 337

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 39/96 (40%), Gaps = 5/96 (5%)

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS--VYKSAEAI 191
           A + ++ + +     +  A V + +P       +   P  SV++ +           ++I
Sbjct: 70  AKKEQLEKDLTMFQPVAHATVALSLPTEDDPHIV---PQVSVILSSHKNELFSLSLLQSI 126

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL 227
              +++++P L    +T+ D+ G   +  E   N L
Sbjct: 127 TDYLSSSLPGLTKEHITLSDNLGNTYSPGEFSTNSL 162


>gi|18072081|gb|AAL58462.1|AF456769_1 putative EscJ protein [Escherichia coli]
          Length = 111

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 38/104 (36%), Gaps = 7/104 (6%)

Query: 75  RISDNGS-SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
            +  +G+ +ISV      +A   L   G P     +  E+    +    +   +      
Sbjct: 2   EMDKSGNVTISVEKEDFVRAITILNNNGFPKKKF-ADIEVIFPPSQLVASPSQENAKINY 60

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
             E +I R +  I G++   V + + +           +A+V++
Sbjct: 61  LKEQDIERLLSKIPGVIDCSVSLNVNNN-----ESQPSSAAVLV 99


>gi|15605452|ref|NP_220238.1| type III secretion system protein [Chlamydia trachomatis D/UW-3/CX]
 gi|3329175|gb|AAC68314.1| Flagellar M-Ring Protein [Chlamydia trachomatis D/UW-3/CX]
 gi|297748850|gb|ADI51396.1| FliF [Chlamydia trachomatis D-EC]
 gi|297749730|gb|ADI52408.1| FliF [Chlamydia trachomatis D-LC]
          Length = 334

 Score = 49.6 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 42/120 (35%), Gaps = 18/120 (15%)

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AE 189
           ++A + ++ + +     ++ A V +   +             SV++     S        
Sbjct: 68  IQAKKEQLEKDLTLFEPVLQATVALSQEEDSL-------AEISVILSLPQASTLSPSLVH 120

Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKAL 249
           +I   +  +VP L    +T+ D  G L +    + N L  +          +E ++   L
Sbjct: 121 SITDYLTRSVPGLTKEHITLSDQHGNLYSPLFEQSNTLLTT---------SLERSLQTIL 171


>gi|255349112|ref|ZP_05381119.1| type III secretion system protein [Chlamydia trachomatis 70]
 gi|255503649|ref|ZP_05382039.1| type III secretion system protein [Chlamydia trachomatis 70s]
 gi|255507328|ref|ZP_05382967.1| type III secretion system protein [Chlamydia trachomatis D(s)2923]
 gi|289525763|emb|CBJ15244.1| flagellar M-Ring Protein [Chlamydia trachomatis Sweden2]
 gi|296435336|gb|ADH17514.1| type III secretion system protein [Chlamydia trachomatis E/150]
 gi|296439053|gb|ADH21206.1| type III secretion system protein [Chlamydia trachomatis E/11023]
          Length = 334

 Score = 49.6 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 42/120 (35%), Gaps = 18/120 (15%)

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AE 189
           ++A + ++ + +     ++ A V +   +             SV++     S        
Sbjct: 68  IQAKKEQLEKDLTLFEPVLQATVALSQEEDSL-------AEISVILSLPQSSTLSPSLVH 120

Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKAL 249
           +I   +  +VP L    +T+ D  G L +    + N L  +          +E ++   L
Sbjct: 121 SITDYLTRSVPGLTKEHITLSDQHGNLYSPLFEQSNTLLTT---------SLERSLQTIL 171


>gi|237803149|ref|YP_002888343.1| type III secretion system protein [Chlamydia trachomatis
           B/Jali20/OT]
 gi|237805070|ref|YP_002889224.1| type III secretion system protein [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|255311549|ref|ZP_05354119.1| type III secretion system protein [Chlamydia trachomatis 6276]
 gi|255317850|ref|ZP_05359096.1| type III secretion system protein [Chlamydia trachomatis 6276s]
 gi|231273370|emb|CAX10285.1| flagellar M-Ring Protein [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274383|emb|CAX11178.1| flagellar M-Ring Protein [Chlamydia trachomatis B/Jali20/OT]
 gi|296436264|gb|ADH18438.1| type III secretion system protein [Chlamydia trachomatis G/9768]
 gi|296437193|gb|ADH19363.1| type III secretion system protein [Chlamydia trachomatis G/11222]
 gi|296438124|gb|ADH20285.1| type III secretion system protein [Chlamydia trachomatis G/11074]
 gi|297140625|gb|ADH97383.1| type III secretion system protein [Chlamydia trachomatis G/9301]
          Length = 334

 Score = 49.6 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 42/120 (35%), Gaps = 18/120 (15%)

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AE 189
           ++A + ++ + +     ++ A V +   +             SV++     S        
Sbjct: 68  IQAKKEQLEKDLTLFEPVLQATVALSQEEDSL-------AEISVILSLPQASTLSPSLVH 120

Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKAL 249
           +I   +  +VP L    +T+ D  G L +    + N L  +          +E ++   L
Sbjct: 121 SITDYLTRSVPGLTKEHITLSDQHGNLYSPLFEQSNTLLTT---------SLERSLQTIL 171


>gi|166154061|ref|YP_001654179.1| type III secretion system protein [Chlamydia trachomatis 434/Bu]
 gi|166154936|ref|YP_001653191.1| type III secretion system protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335263|ref|ZP_07223507.1| type III secretion system protein [Chlamydia trachomatis L2tet1]
 gi|165930049|emb|CAP03532.1| flagellar M-Ring Protein [Chlamydia trachomatis 434/Bu]
 gi|165930924|emb|CAP06486.1| flagellar M-Ring Protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 334

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 42/120 (35%), Gaps = 18/120 (15%)

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AE 189
           ++A + ++ + +     ++ A V +   +             SV++     S        
Sbjct: 68  IQAKKEQLEKDLTLFEPVLQATVALSQEEDSL-------AEISVILSLPQASTLSPSLVH 120

Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKAL 249
           +I   +  +VP L    +T+ D  G L +    + N L  +          +E ++   L
Sbjct: 121 SITDYLTRSVPGLTKEHITLSDQHGNLYSPLFEQSNTLLTT---------SLERSLQTIL 171


>gi|15834717|ref|NP_296476.1| type III secretion system protein [Chlamydia muridarum Nigg]
 gi|270284883|ref|ZP_06194277.1| type III secretion system protein [Chlamydia muridarum Nigg]
 gi|270288911|ref|ZP_06195213.1| type III secretion system protein [Chlamydia muridarum Weiss]
 gi|7190126|gb|AAF38972.1| conserved hypothetical protein [Chlamydia muridarum Nigg]
          Length = 332

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/117 (14%), Positives = 45/117 (38%), Gaps = 14/117 (11%)

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187
           +   ++A + ++   +     I+ A V +        ++  A    SV++   +      
Sbjct: 62  QSMEIQAKKEQLENDLTMFDPILQATVALS-------QEEDAPAEISVILSLPHALTLSP 114

Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242
               +I   +  +VP L    +T+ D  G L +    + + L     +V +++  ++
Sbjct: 115 SLVHSITDYLMRSVPGLTKEHITLSDQQGNLYSPLLEQSDTL-----LVTSLERSLQ 166


>gi|76789459|ref|YP_328545.1| type III secretion system protein [Chlamydia trachomatis A/HAR-13]
 gi|76167989|gb|AAX50997.1| FliF [Chlamydia trachomatis A/HAR-13]
          Length = 334

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 42/120 (35%), Gaps = 18/120 (15%)

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AE 189
           ++A + ++ + +     ++ A V +   +             SV++     S        
Sbjct: 68  IQAKKEQLEKDLTLFEPVLQATVALSQEEDSL-------AEISVILSLPQASTLSPSLVH 120

Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKAL 249
           +I   +  +VP L    +T+ D  G L +    + N L  +          +E ++   L
Sbjct: 121 SITDYLTRSVPGLTKEYITLSDQHGNLYSPLFEQSNTLLTT---------SLERSLQTIL 171


>gi|322632874|gb|EFY29618.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-1]
          Length = 163

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 38/97 (39%), Gaps = 2/97 (2%)

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
           N   ++   ++       E  I   +  + G++ A+V I +P         +  + +V I
Sbjct: 5   NQLVVSPQEEQQKINFLKEQRIEGMLSQMEGVINAKVTIALPTYDE-GSNASPSSVAVFI 63

Query: 178 RAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVLDST 213
           +       ++    I+ L+  ++P L    +++L   
Sbjct: 64  KYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISILMQP 100


>gi|213422413|ref|ZP_03355479.1| putative pathogenicity island lipoprotein [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 163

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 38/97 (39%), Gaps = 2/97 (2%)

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
           N   ++   ++       E  I   +  + G++ A+V I +P         +  + +V I
Sbjct: 5   NQLVVSPQEEQQKINFLKEQRIEGMLSQMEGVINAKVTIALPTYDE-GSNASPSSVAVFI 63

Query: 178 RAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVLDST 213
           +       ++    I+ L+  ++P L    +++L   
Sbjct: 64  KYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISILMQP 100


>gi|167947314|ref|ZP_02534388.1| flagellar basal-body M-ring protein FliF [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 91

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 22/54 (40%)

Query: 218 TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ 271
             N  + ++        Q ++   +  I   +A  +G +N R+ V AEL+    
Sbjct: 5   DENSSQMSLTTSQFEYTQELEAHFKQRIEDIVAPLVGNENLRAEVTAELDFSQV 58


>gi|290983317|ref|XP_002674375.1| predicted protein [Naegleria gruberi]
 gi|284087965|gb|EFC41631.1| predicted protein [Naegleria gruberi]
          Length = 1240

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 75/231 (32%), Gaps = 33/231 (14%)

Query: 209 VLDSTGKLLTANEMERN---ILGKSLSIVQAIQHE------IEMNINKALAAFLGVDNFR 259
           +++  G  + AN    N   + G++ +    I         +E ++   L+  L      
Sbjct: 722 IVNGPGLYINANSETFNNGMVAGETYTFQVNITRADGYSTVLESSVQVGLSPVLKATIVN 781

Query: 260 ----SAVVAELNMDTQQIREIVYDPD-----------------SKVERSIRLSKDAQRSE 298
               S     +        +  YDP+                  KV      SK    + 
Sbjct: 782 PSDNSQTGVAVTTKFTATIQESYDPNDSEATLMYGYGFYTESGLKVVSVYSSSKQTNLTL 841

Query: 299 TSQPESAVTV-EQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
             Q   +VT     +   +  +  L  S+  ++    +S  E+N+        +  + +L
Sbjct: 842 PYQTGGSVTAFVYVINAQTGNQKELKFSMNVSNPTSGKSASEVNSFVQNLVTSDASVSQL 901

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
           SIAV +     +     +  Q + D     I  +VS     ++ R   +T+
Sbjct: 902 SIAVQL--LTTSPSSDPTVVQQRTDIKQQVITTLVSKPVTTSAERDTLLTV 950


>gi|301336262|ref|ZP_07224464.1| type III secretion system protein [Chlamydia muridarum MopnTet14]
          Length = 332

 Score = 47.3 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 43/114 (37%), Gaps = 10/114 (8%)

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSAEA 190
           +A + +I + +     I+ A V +   +             SV++              +
Sbjct: 67  QAKKEQIEKDLTMFDPILQATVALSQGEET-------PAEISVILSLPYAQTLSPSLVHS 119

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN 244
           I   +  +VP L    +T+ D  G L ++  +E+N    + S+ ++ Q  +   
Sbjct: 120 ITDYLMRSVPGLTKEQITLSDQQGNLYSSF-LEQNTTLLTTSLERSFQAILPQK 172


>gi|144897188|emb|CAM74052.1| Flagellar biosynthesis/type III secretory pathway lipoprotein
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 53

 Score = 47.3 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 7/51 (13%), Positives = 20/51 (39%)

Query: 503 SSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
              +++ +       ++   V   S  ++  +++ + E    I+R W   E
Sbjct: 2   GGEEEVIADELIDIDKVEGRVKASSIRKIGEIVDKHPEEALSIIRNWLYQE 52


>gi|322650270|gb|EFY46684.1| putative pathogenicity island lipoprotein [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
          Length = 106

 Score = 46.9 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 4/100 (4%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90
           I+      FF+ +    +LY  L   + N++   L + +ID      ++G ++ V  S  
Sbjct: 6   IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
             A   L   G P     +  ++F       ++   ++  
Sbjct: 65  INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQK 103


>gi|145592719|ref|YP_001157016.1| hypothetical protein Strop_0153 [Salinispora tropica CNB-440]
 gi|145302056|gb|ABP52638.1| hypothetical protein Strop_0153 [Salinispora tropica CNB-440]
          Length = 784

 Score = 45.4 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 57/392 (14%), Positives = 117/392 (29%), Gaps = 57/392 (14%)

Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVP--NLDMGDV 207
             A V + +             +A++ +  ++ S  +        V+ ++   +    DV
Sbjct: 130 QRAGVVVALLVGALLTVPATPASAALGVNNVSASPSRIEAGGTTTVSYSIEISDDKPADV 189

Query: 208 TVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELN 267
           TV  S GKL   +   R+ + +S     + Q                       + ++  
Sbjct: 190 TVTSSNGKLTCVDGCSRSGVNQSQDFQASFQ-----------------------LASDTT 226

Query: 268 MDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSL- 326
                I     D D +  R+ R++  A+     QP  A TV+     V ++         
Sbjct: 227 NGQATITVTAVDSDGEKSRTTRVTLVAKPEPEPQPSQAQTVKSVSGEVVNQSTGSAVPGA 286

Query: 327 ------ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380
                    +K +  ++   N +   +T +     RL I   ++    T+ L  SA Q  
Sbjct: 287 LVVLRDSRNNKFDTITDNGGNFRFTGSTQNPITPGRLDIGASMDGSTATKTLNASAGQSV 346

Query: 381 IDSYLA-EINKI------------VSAATGINSRRGDTIT-ITSMDFLENQLFNSGTVQV 426
               ++  I +              +   G++    + I     +   E     SG    
Sbjct: 347 SGQRISLRIQEEPTASPSPSTSIDAAPTVGVDEETEEPIEAAVDVPVAEASDEGSGGTGS 406

Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486
                           +   VGT+++ +     LRR  N D+ + G     +     P++
Sbjct: 407 ------LLIILLGGLLVAAGVGTMVLLW-----LRRKENDDEDEAGVNPSGAATGAVPVA 455

Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
                G      I   ++            + 
Sbjct: 456 RGGYGGADDQTRIVNPTAAAPTMVGGDPSLAD 487


>gi|222476516|gb|ACM61988.1| phenylalanine ammonia-lyase [Lycoris radiata]
          Length = 708

 Score = 45.0 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 10/95 (10%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
            Y   YVKLE          L  A I   ++++GS++ V      +AR+  A+      S
Sbjct: 42  DYREAYVKLE-------GATLKVAQIAA-VANDGSAVKVELDESARARVK-ASSDWVMDS 92

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
            N G + +     FG TS  +   +  AL+ E+ R
Sbjct: 93  MNKGTDSYGVTTGFGATS-HRRTKQGGALQKELIR 126


>gi|330443917|ref|YP_004376903.1| flagellar M-ring protein [Chlamydophila pecorum E58]
 gi|328807027|gb|AEB41200.1| flagellar M-ring protein [Chlamydophila pecorum E58]
          Length = 319

 Score = 44.2 bits (103), Expect = 0.050,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 39/96 (40%), Gaps = 5/96 (5%)

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AI 191
           A + ++ + +     I +A+V + +P      ++      SV++              +I
Sbjct: 50  AKKEQLEKDLTIFHPIASAKVALALPSDS---EVSHPLKLSVILTLHKDQYLTPMLLFSI 106

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL 227
              + ++ P L   D+T+ D+ G   T   ++ N L
Sbjct: 107 ADYLCSSFPGLRHEDITLSDNEGNFYTPELIDTNFL 142


>gi|149043451|gb|EDL96902.1| rCG65894 [Rattus norvegicus]
          Length = 660

 Score = 43.9 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 16/122 (13%), Positives = 37/122 (30%), Gaps = 6/122 (4%)

Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292
           + QA    ++  +N         +   +    E N  T Q  +    P ++  +  + + 
Sbjct: 536 MAQAFNAALQRQVND---PVTKTNQLTNQTNKETNQATNQTNQPTNQPTNQPNQPTKPTN 592

Query: 293 DAQR---SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
              +     T+QP +      N P+    +   P        +  +   +    +  T  
Sbjct: 593 QPNQPTNQPTNQPTNQTNQPSNQPNQPTNQTNQPNQPNQPTNQPTKPTNQPTQPTQPTKP 652

Query: 350 DN 351
            N
Sbjct: 653 TN 654


>gi|269302646|gb|ACZ32746.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]
          Length = 341

 Score = 43.1 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/81 (16%), Positives = 34/81 (41%), Gaps = 5/81 (6%)

Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLV 195
           ++ + + S   I +A+V I +        + +    SV++          +   +I   +
Sbjct: 75  QLEKDLTSFHPIASAKVAIALSTED---DVMSPLHLSVILTLRKEESLTPSLLFSITDYL 131

Query: 196 AAAVPNLDMGDVTVLDSTGKL 216
            +++P L    +++ D+ G L
Sbjct: 132 CSSLPGLKREHISLSDNLGNL 152


>gi|15618769|ref|NP_225055.1| type III secretion system protein [Chlamydophila pneumoniae CWL029]
 gi|15836393|ref|NP_300917.1| type III secretion system protein [Chlamydophila pneumoniae J138]
 gi|16752179|ref|NP_445546.1| type III secretion system protein [Chlamydophila pneumoniae AR39]
 gi|33242220|ref|NP_877161.1| type III secretion system protein [Chlamydophila pneumoniae TW-183]
 gi|4377177|gb|AAD18998.1| Flagellar M-Ring Protein [Chlamydophila pneumoniae CWL029]
 gi|7189923|gb|AAF38787.1| conserved hypothetical protein [Chlamydophila pneumoniae AR39]
 gi|8979234|dbj|BAA99068.1| flagellar M-ring protein [Chlamydophila pneumoniae J138]
 gi|33236731|gb|AAP98818.1| flagellar motor switch protein [Chlamydophila pneumoniae TW-183]
          Length = 341

 Score = 43.1 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/81 (16%), Positives = 34/81 (41%), Gaps = 5/81 (6%)

Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE--AIRHLV 195
           ++ + + S   I +A+V I +        + +    SV++          +   +I   +
Sbjct: 75  QLEKDLTSFHPIASAKVAIALSTED---DVMSPLHLSVILTLRKEESLTPSLLFSITDYL 131

Query: 196 AAAVPNLDMGDVTVLDSTGKL 216
            +++P L    +++ D+ G L
Sbjct: 132 CSSLPGLKREHISLSDNLGNL 152


>gi|302550206|ref|ZP_07302548.1| ABC transporter substrate-binding protein [Streptomyces
           viridochromogenes DSM 40736]
 gi|302467824|gb|EFL30917.1| ABC transporter substrate-binding protein [Streptomyces
           viridochromogenes DSM 40736]
          Length = 272

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 9/80 (11%)

Query: 78  DNGSSISVPSSMVGKARIH--LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135
            +G++++VP+  V +AR    LAA GL +     G E          +   +   +++  
Sbjct: 130 KSGATVAVPNDTVNEARALKLLAAHGLITLKDGVGSEA-------TPSDITKNPKKLKFK 182

Query: 136 EGEIARTIQSISGIVAARVH 155
           E E A+T +S+  + AA V+
Sbjct: 183 ELEAAQTPRSLDDVDAAVVN 202


>gi|325066922|ref|ZP_08125595.1| DNA/RNA helicase [Actinomyces oris K20]
          Length = 440

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 11/111 (9%)

Query: 32  PIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVG 91
            +  F+A R +        L      + +  ++  L  A + + I   G  + VP   V 
Sbjct: 17  TVAAFLAER-WSPGAEMAVL--CRTRAQMEPVAAELEAAGLPYTIIGLGGMLYVPE--VA 71

Query: 92  KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
             R  L       S    G  +   +  FG+ +    +  + AL  E+ RT
Sbjct: 72  DVRALLTTA----SDPERGDRVVRLLTGFGIGARDLRV--LAALARELTRT 116


>gi|297198402|ref|ZP_06915799.1| ABC transporter substrate-binding protein [Streptomyces sviceus
           ATCC 29083]
 gi|197716092|gb|EDY60126.1| ABC transporter substrate-binding protein [Streptomyces sviceus
           ATCC 29083]
          Length = 276

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 9/80 (11%)

Query: 78  DNGSSISVPSSMVGKAR--IHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135
            +G++++VP+  V +AR    LAA GL +     G E   +          +    ++  
Sbjct: 134 KSGATVAVPNDAVNEARSLKLLAANGLITLKDGVGSEATPQ-------DIAKNPKNLKFK 186

Query: 136 EGEIARTIQSISGIVAARVH 155
           E E A+T++S+  + AA V+
Sbjct: 187 EVEAAQTVRSLDDVDAAVVN 206


>gi|156030967|ref|XP_001584809.1| hypothetical protein SS1G_14264 [Sclerotinia sclerotiorum 1980]
 gi|154700655|gb|EDO00394.1| hypothetical protein SS1G_14264 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 332

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 39/102 (38%), Gaps = 16/102 (15%)

Query: 14  GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73
           G +LGR R ++L + I +   +  ++ + +       L   L   +   +  AL +  ID
Sbjct: 55  GDTLGRKRTIMLGAAINMVGAILQSSSYSLGQLIVGRLISGLGFEEAREVVSALDDMPID 114

Query: 74  -FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114
             ++  + + I                +GL  +   S  ++F
Sbjct: 115 SAQVQADIAEI---------------EEGLVITGKGSFCDIF 141


>gi|16266007|gb|AAL16707.1|AF358716_1 putative flagellar M-ring protein [Helicobacter hepaticus]
          Length = 95

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 3/91 (3%)

Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
             + K+ +R    Q      V  N+  V   K      +E   + E   N EI  K  + 
Sbjct: 7   ESMKKERKRIPPPQIGGVPGVVSNIGPVQGLKD--DEMMEWEKESEVVQNNEIGKKVSSI 64

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQ 378
           +     L+R+S +V+++ G   EV+G   + 
Sbjct: 65  SEHYGVLKRVSASVMID-GTYEEVVGEDGET 94


>gi|14422425|dbj|BAB60832.1| eprK [Escherichia coli]
          Length = 178

 Score = 41.9 bits (97), Expect = 0.25,   Method: Composition-based stats.
 Identities = 11/109 (10%), Positives = 41/109 (37%), Gaps = 2/109 (1%)

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
               +         ++   +   ++     A+E  + ++++ + GI+++RVH+       
Sbjct: 10  PGKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIISSRVHVSYDVDNG 69

Query: 164 FRKIGARPTASVMIRAINPSVYKSAEA--IRHLVAAAVPNLDMGDVTVL 210
                A P    ++      +    +   I+  +  +  ++   +++V+
Sbjct: 70  DSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSSASVQYENISVV 118


>gi|46205379|ref|ZP_00048615.2| COG1766: Flagellar biosynthesis/type III secretory pathway
           lipoprotein [Magnetospirillum magnetotacticum MS-1]
          Length = 101

 Score = 41.9 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 32/87 (36%)

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
            A +G     +       ++    G +         + +        L   +   +++  
Sbjct: 13  AAPEGAPALAAGALSADAAALAAPGAVAAGAALPGEAPKLPAPGVAGLLEELEDKMARSP 72

Query: 528 DLRLLHMIEINEERFAKILRKWARSEI 554
             RL  +I+INEE+ A +L++W   E 
Sbjct: 73  QKRLEQLIDINEEQVAAVLKRWLMREE 99


>gi|213585522|ref|ZP_03367348.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 39

 Score = 41.5 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
              K  + I+++V+AAVP L   +V + D +G L
Sbjct: 5   LTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVL 38


>gi|300859157|ref|YP_003784140.1| two-component system sensor kinase protein [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686611|gb|ADK29533.1| two-component system sensor kinase protein [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206851|gb|ADL11193.1| Alkaline phosphatase synthesis sensor protein phoR [Corynebacterium
           pseudotuberculosis C231]
 gi|302331413|gb|ADL21607.1| Two-component system sensor kinase [Corynebacterium
           pseudotuberculosis 1002]
 gi|308277103|gb|ADO27002.1| Two-component system sensor kinase [Corynebacterium
           pseudotuberculosis I19]
          Length = 501

 Score = 41.5 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 37/90 (41%)

Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498
           +I   V L+  L+  FL   ALR LH ++   K    G      P  S     G + +  
Sbjct: 200 IIEIAVLLLMALIAFFLIRRALRPLHEVECTAKAIAQGDLDRRVPEASENTEVGALSSSL 259

Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
            ++ S  Q +    ++ ++++  +V   S 
Sbjct: 260 NSMISRLQSLIVELQDKEAQMRRFVGDASH 289


>gi|262203602|ref|YP_003274810.1| amino acid adenylation domain-containing protein [Gordonia bronchialis
             DSM 43247]
 gi|262086949|gb|ACY22917.1| amino acid adenylation domain protein [Gordonia bronchialis DSM 43247]
          Length = 11233

 Score = 41.5 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 53/321 (16%), Positives = 97/321 (30%), Gaps = 42/321 (13%)

Query: 115   DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174
             D +   G      ++   R   GEI   I ++ G+ AA   ++ PD    R       A 
Sbjct: 10544 DDIEYMGRADAQVQLRGFRIEYGEIEAAILTVDGVTAAAARVIRPDN---RDEQLIGYA- 10599

Query: 175   VMIRAINPSVYKSAEAIRHLVAAAVPN-LDMGDVTVLD-----STGKLLTANEMERNILG 228
                   +        AIR  VA AVP  +    + V++     + GKL  +      +  
Sbjct: 10600 ----LADAGTDLDVHAIRERVARAVPGYMVPDRIVVVERLPLTANGKLDRSALPVPELPD 10655

Query: 229   KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288
                + V A   + E  I    A  LG +       +  ++    +             S 
Sbjct: 10656 TGEAGVVAADTDAERVIAAIFADVLGAEQVSV-TESFFDLGGNSLSATRVAARVSDALSA 10714

Query: 289   RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINT-KSIAT 347
              +S     +  +    A TV+  +  ++     +PR         +Q  + IN     ++
Sbjct: 10715 EVSVRDLFTTPTVRGLAATVDSGVAGLAPVTAVVPRPDHIPLSFAQQRMWFINQFDPTSS 10774

Query: 348   THDNYKLERLS--------------IAV----------VVNKGRLTEVLGRSADQGKIDS 383
              ++   + RLS              + V           V+      +          D 
Sbjct: 10775 AYNIPTVVRLSGTLDVDALRAALVDVVVRHEVLRTTFPAVDGRPRQVISDPDDVDADFDW 10834

Query: 384   YLAEINKIVSAAT--GINSRR 402
              + +    V  A   G +  R
Sbjct: 10835 QIVDTRGAVEDAVITGFDVAR 10855


>gi|304315496|ref|YP_003850643.1| isoleucyl-tRNA synthetase [Methanothermobacter marburgensis str.
            Marburg]
 gi|9297121|sp|P26499|SYI_METTM RecName: Full=Isoleucyl-tRNA synthetase; AltName:
            Full=Isoleucine--tRNA ligase; Short=IleRS
 gi|68525|pir||SYEXI isoleucine-tRNA ligase (EC 6.1.1.5) [validated] - Methanobacterium
            thermoautotrophicum (strain Marburg)
 gi|149728|gb|AAA72950.1| transfer RNA-Ile synthetase [Methanothermobacter thermautotrophicus]
 gi|302588955|gb|ADL59330.1| isoleucyl-tRNA synthetase [Methanothermobacter marburgensis str.
            Marburg]
          Length = 1045

 Score = 41.5 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 48/131 (36%), Gaps = 17/131 (12%)

Query: 45   SPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPS 104
                  +  KLE +D   +  AL      FR+  +G  I +    +      +    LP 
Sbjct: 883  RQDMPPVMRKLEEADGAEVKAALESEG-SFRVDLDGRIIVLEPDDI------IFETELPE 935

Query: 105  SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSIS-----GIVAARVHIVMP 159
            +  N+ +E     + F  T    EI    A+  E+ R IQ +       +  AR+ + + 
Sbjct: 936  NIVNAQFE---GGSVFVDTELTPEIM-SEAMARELVRRIQDMRKDLDLDVE-ARIEVSVK 990

Query: 160  DMGSFRKIGAR 170
                FR++   
Sbjct: 991  CSPEFRELTEP 1001


>gi|313650160|gb|EFS14573.1| flagellar M-ring domain protein [Shigella flexneri 2a str. 2457T]
 gi|332756094|gb|EGJ86447.1| flagellar M-ring protein domain protein [Shigella flexneri 4343-70]
 gi|332757323|gb|EGJ87660.1| flagellar M-ring protein domain protein [Shigella flexneri 2747-71]
 gi|332757504|gb|EGJ87839.1| flagellar M-ring protein domain protein [Shigella flexneri K-671]
 gi|332766676|gb|EGJ96880.1| flagellar M-ring FliF basal-body MS(membrane and
           supramembrane)-ring and collar domain protein [Shigella
           flexneri 2930-71]
 gi|333003262|gb|EGK22808.1| flagellar M-ring protein domain protein [Shigella flexneri K-218]
 gi|333017640|gb|EGK36952.1| flagellar M-ring protein domain protein [Shigella flexneri K-304]
          Length = 53

 Score = 41.5 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 504 SNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
            ++D     R    R+ + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 5   LSKDEQLQQRRANQRLGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 53


>gi|153824291|ref|ZP_01976958.1| flagellar M-ring protein [Vibrio cholerae B33]
 gi|126518186|gb|EAZ75411.1| flagellar M-ring protein [Vibrio cholerae B33]
          Length = 131

 Score = 41.5 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 52/142 (36%), Gaps = 12/142 (8%)

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           M F E ++     V +      +       +ALV ++       L   A+++L N     
Sbjct: 1   MPFAEPEMEQIVDVPIWEHPNFNDWVRWFASALVIIIVI---LVLVRPAMKKLINPAADN 57

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
             ++ G       PI +   T L+ +D   +D      F    +L    N +  +     
Sbjct: 58  DDQMYGP---DGMPIGADGETSLIGSD---IDGGELFEFGSGIDLP---NLHKDEDVLKA 108

Query: 531 LLHMIEINEERFAKILRKWARS 552
           +  ++    E  A++++ W ++
Sbjct: 109 VRALVANEPELAAQVVKNWMQN 130


>gi|322825891|gb|EFZ30715.1| pyruvate dehydrogenase (lipoamide) kinase, putative [Trypanosoma
           cruzi]
          Length = 445

 Score = 41.2 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 11/105 (10%)

Query: 95  IHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ-EITRVRALEGE----IARTIQSISGI 149
           + LAA+ +      +  ++ D V  + LTS    E+ +  AL+ E    + R +  I  +
Sbjct: 44  MALAAEAIAKERQRAKGDI-DVVMEYPLTSEEFVELNQFYALQKEKRLPL-RNMMHIRNV 101

Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHL 194
               VH  +       ++  R  A      + P       +I+ L
Sbjct: 102 EDLYVHAKIIHREYLVRLAQRARA----LTLAPMGLSQMPSIQEL 142


>gi|71666229|ref|XP_820076.1| pyruvate dehydrogenase (lipoamide) kinase [Trypanosoma cruzi strain
           CL Brener]
 gi|70885405|gb|EAN98225.1| pyruvate dehydrogenase (lipoamide) kinase, putative [Trypanosoma
           cruzi]
          Length = 445

 Score = 41.2 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 11/105 (10%)

Query: 95  IHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ-EITRVRALEGE----IARTIQSISGI 149
           + LAA+ +      +  ++ D V  + LTS    E+ +  AL+ E    + R +  I  +
Sbjct: 44  MALAAEAIAKERQRAKGDI-DVVMEYPLTSEEFVELNQFYALQKEKRLPL-RNMMHIRNV 101

Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHL 194
               VH  +       ++  R  A      + P       +I+ L
Sbjct: 102 EDLYVHAKIIHREYLVRLAQRARA----LTLAPMGLSQMPSIQEL 142


>gi|92115103|ref|YP_575031.1| cell division protein FtsX [Chromohalobacter salexigens DSM 3043]
 gi|91798193|gb|ABE60332.1| cell division protein FtsX [Chromohalobacter salexigens DSM 3043]
          Length = 330

 Score = 41.2 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 58/156 (37%), Gaps = 28/156 (17%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS------- 68
            L +  +  L +++ + I L + +  ++       L  +L+  +   ++V L        
Sbjct: 46  RLAKRPMGSLLTMLAIAIALVLPSGLWLALDSARLLDAELD--ESATVTVYLDTRLDERQ 103

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYE---LFDKVNSFG---- 121
             ++  R+ +         S V  AR+  AA+GL       G E      + N       
Sbjct: 104 AMDVAARLRE--------QSPVAGARLVTAAEGLAEFQQGLGLEDALSELQDNPLPAAVV 155

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
           +T        VR     +A  ++++ G+  ARV + 
Sbjct: 156 VTPDDTRPEAVRV----LASNLEAVDGVAEARVDLA 187


>gi|326505030|dbj|BAK02902.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 716

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 49/140 (35%), Gaps = 12/140 (8%)

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
            A +    RL +  G+S      +  L  +     AA G ++  GD +        E   
Sbjct: 220 AATLSATLRLDDPPGQSPYTVSANVDLRNVGLPQEAAVGFSASIGDLV--------EKHQ 271

Query: 419 FNSGTVQVSFMDILSRHFATVINALV---FLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
             S + Q S  D  ++   ++I  LV    L+   +  +LG     +    +     E  
Sbjct: 272 ILSWSFQSSMTDSKTK-GTSLIAGLVSSGLLILLAIAVWLGYRQYVKRKGKNIHDMPEDA 330

Query: 476 GKSILSPPPISSAVTTGLMP 495
            ++ L    + S +  G  P
Sbjct: 331 DETPLDDQDMDSELEKGTAP 350


>gi|221195362|ref|ZP_03568417.1| signal transduction histidine-protein kinase ArlS [Atopobium rimae
           ATCC 49626]
 gi|221184549|gb|EEE16941.1| signal transduction histidine-protein kinase ArlS [Atopobium rimae
           ATCC 49626]
          Length = 419

 Score = 40.8 bits (94), Expect = 0.55,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 85/233 (36%), Gaps = 28/233 (12%)

Query: 258 FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSD 317
           F   +   L   +++IR+   D    + R        Q+SET+    A +  +N     +
Sbjct: 8   FVVTLSVILFASSREIRQKNMD---MLNRYADQYSMQQKSETAGQSRADSKPEN--QTGN 62

Query: 318 RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI----AVVVNKGRLTEVLG 373
           +    P++       E++ +YE++T    T   +  +  LS+      + +   LT +  
Sbjct: 63  QPNNQPQNKPENQPPEDKPDYELSTFYSVTFSSDGNV--LSVFDGEKTIYSNDELTTLAR 120

Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433
           +  D+G        ++ +     G           T + F++N +   G      +  + 
Sbjct: 121 QILDEGHPSGRKDNLSYVTRQKDGY----------TLVAFMDNTVSEGG------LRTMM 164

Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486
           R+   ++     +V   +  FL    +R L   D  +K  +   S     PIS
Sbjct: 165 RNVL-IVGGASIVVLFFISVFLAGRIIRPLEENDTKQKQFISNASHELKTPIS 216


>gi|145527828|ref|XP_001449714.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124417302|emb|CAK82317.1| unnamed protein product [Paramecium tetraurelia]
          Length = 5291

 Score = 40.8 bits (94), Expect = 0.55,   Method: Composition-based stats.
 Identities = 19/168 (11%), Positives = 60/168 (35%), Gaps = 6/168 (3%)

Query: 186  KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNI 245
            K  E  + ++  +V   +  +V+V + +  ++     + N +  +        +E     
Sbjct: 1194 KQNEQTQQIIGNSVE--EKKEVSVSEQS-NIINQEIEQVNKIISTKDEKNQTTNETTKEA 1250

Query: 246  NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305
             K        +        ++  + + I +         + S +     Q++  SQ ++ 
Sbjct: 1251 QKTNETIQQSNKVDQQKDLKIQQNDKVINQTGETTQRSNQASQQTDSTIQKTNKSQQQTD 1310

Query: 306  VTVEQN---MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
              ++QN   +    +      +S++ T++  +Q+N  +   +     +
Sbjct: 1311 EIIQQNNNSIQQTDEIIQQSNKSIQQTNETSQQNNKAVQQTNETIQQN 1358


>gi|119387609|ref|YP_918643.1| binding-protein-dependent transport systems inner membrane
          component [Paracoccus denitrificans PD1222]
 gi|119378184|gb|ABL72947.1| binding-protein-dependent transport systems inner membrane
          component [Paracoccus denitrificans PD1222]
          Length = 240

 Score = 40.8 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 24/48 (50%)

Query: 2  AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD 49
           +LDQ+  ++   T L R  + ++AS     I++ +    +++ P  +
Sbjct: 27 GLLDQITIYWDDITYLTRQHVFLVASSGGAAILVGVPVGIWLSRPSME 74


>gi|90424239|ref|YP_532609.1| methyl-accepting chemotaxis sensory transducer [Rhodopseudomonas
           palustris BisB18]
 gi|90106253|gb|ABD88290.1| methyl-accepting chemotaxis sensory transducer [Rhodopseudomonas
           palustris BisB18]
          Length = 560

 Score = 40.8 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 42/108 (38%)

Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498
           V+ AL  ++G   V F+       L  ++ A     GG+  +  P    A   G M  + 
Sbjct: 191 VVGALAVVIGIAAVLFVIFRVAAGLTGLNGALAKMAGGQLDIDIPGAGRADEIGDMAKNV 250

Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546
           + +  ++++        ++  +   ++Q    +  M +  E    +I+
Sbjct: 251 VTIRQNSENAARADAEAKAERDRQAAEQRKQEMYRMADDFEGAVGEII 298


>gi|19924077|ref|NP_612547.1| dynamin-3 [Rattus norvegicus]
 gi|190358903|sp|Q08877|DYN3_RAT RecName: Full=Dynamin-3; AltName: Full=Dynamin, testicular;
           AltName: Full=T-dynamin
 gi|6409115|gb|AAF07848.1|AF201839_1 dynamin IIIbb isoform [Rattus norvegicus]
          Length = 869

 Score = 40.8 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 82/233 (35%), Gaps = 28/233 (12%)

Query: 125 FMQEITRVRALEGEIA-RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
             Q          E+A  + + +    A+ +   +    SF +      A     +++P 
Sbjct: 597 TEQRNVYKDYRSLELACDSQEDVDSWKASLLRAGVYPDKSFTENDENGQAENF--SMDPQ 654

Query: 184 VYKSAEAIRHLVAA-------AVPNLDMGDVT--VLDS-----TGKLLT---ANEMERNI 226
           + +  E IR+LV +        + +L    +   ++++       +LL    ++E +  +
Sbjct: 655 LERQVETIRNLVDSYMSIINKCIRDLIPKTIMHLMINNVKDFINSELLAQLYSSEDQNTL 714

Query: 227 LGKSLSIVQAIQHEIE--MNINKALAAFLGVDNFRSAVVA--ELNMDTQQIREIVYDPDS 282
           + +S+   Q     +     + +ALA    ++    +  A   ++    Q       P  
Sbjct: 715 MEESVEQAQRRDEMLRMYQALKEALAIIGDINTVTVSTPAPPPVDDSWLQHSRRSPPPSP 774

Query: 283 KVERSIRLSKDAQRSETSQPESA----VTVEQNMPHVSDRKVPLPRSLENTDK 331
             +R + LS    R  +S+  +            P V  R  PLP    ++D 
Sbjct: 775 TTQRRLTLSAPLPRPASSRGPAPAIPSPGPHSGAPPVPFRPGPLPPFPNSSDS 827


>gi|391872|dbj|BAA03161.1| testicular dynamin [Rattus norvegicus]
          Length = 848

 Score = 40.4 bits (93), Expect = 0.75,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 82/233 (35%), Gaps = 28/233 (12%)

Query: 125 FMQEITRVRALEGEIA-RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
             Q          E+A  + + +    A+ +   +    SF +      A     +++P 
Sbjct: 587 TEQRNVYKDYRSLELACDSQEDVDSWKASLLRAGVYPDKSFTENDENGQAENF--SMDPQ 644

Query: 184 VYKSAEAIRHLVAA-------AVPNLDMGDVT--VLDS-----TGKLLT---ANEMERNI 226
           + +  E IR+LV +        + +L    +   ++++       +LL    ++E +  +
Sbjct: 645 LERQVETIRNLVDSYMSIINKCIRDLIPKTIMHLMINNVKDFINSELLAQLYSSEDQNTL 704

Query: 227 LGKSLSIVQAIQHEIE--MNINKALAAFLGVDNFRSAVVA--ELNMDTQQIREIVYDPDS 282
           + +S+   Q     +     + +ALA    ++    +  A   ++    Q       P  
Sbjct: 705 MEESVEQAQRRDEMLRMYQALKEALAIIGDINTVTVSTPAPPPVDDSWLQHSRRSPPPSP 764

Query: 283 KVERSIRLSKDAQRSETSQPESA----VTVEQNMPHVSDRKVPLPRSLENTDK 331
             +R + LS    R  +S+  +            P V  R  PLP    ++D 
Sbjct: 765 TTQRRLTLSAPLPRPASSRGPAPAIPSPGPHSGAPPVPFRPGPLPPFPNSSDS 817


>gi|149058249|gb|EDM09406.1| dynamin 3, isoform CRA_a [Rattus norvegicus]
          Length = 463

 Score = 40.4 bits (93), Expect = 0.79,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 82/233 (35%), Gaps = 28/233 (12%)

Query: 125 FMQEITRVRALEGEIA-RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
             Q          E+A  + + +    A+ +   +    SF +      A     +++P 
Sbjct: 191 TEQRNVYKDYRSLELACDSQEDVDSWKASLLRAGVYPDKSFTENDENGQAENF--SMDPQ 248

Query: 184 VYKSAEAIRHLVAA-------AVPNLDMGDVT--VLDS-----TGKLLT---ANEMERNI 226
           + +  E IR+LV +        + +L    +   ++++       +LL    ++E +  +
Sbjct: 249 LERQVETIRNLVDSYMSIINKCIRDLIPKTIMHLMINNVKDFINSELLAQLYSSEDQNTL 308

Query: 227 LGKSLSIVQAIQHEIE--MNINKALAAFLGVDNFRSAVVA--ELNMDTQQIREIVYDPDS 282
           + +S+   Q     +     + +ALA    ++    +  A   ++    Q       P  
Sbjct: 309 MEESVEQAQRRDEMLRMYQALKEALAIIGDINTVTVSTPAPPPVDDSWLQHSRRSPPPSP 368

Query: 283 KVERSIRLSKDAQRSETSQPESA----VTVEQNMPHVSDRKVPLPRSLENTDK 331
             +R + LS    R  +S+  +            P V  R  PLP    ++D 
Sbjct: 369 TTQRRLTLSAPLPRPASSRGPAPAIPSPGPHSGAPPVPFRPGPLPPFPNSSDS 421


>gi|322650271|gb|EFY46685.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. OH_2009072675]
          Length = 131

 Score = 40.4 bits (93), Expect = 0.80,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDM 204
           + G++ A+V I +P         +  + +V I+       ++    I+ L+  ++P L  
Sbjct: 1   MEGVINAKVTIALPTYDE-GSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQY 59

Query: 205 GDVTVLDST 213
             +++L   
Sbjct: 60  SKISILMQP 68


>gi|260803083|ref|XP_002596421.1| hypothetical protein BRAFLDRAFT_121263 [Branchiostoma floridae]
 gi|229281676|gb|EEN52433.1| hypothetical protein BRAFLDRAFT_121263 [Branchiostoma floridae]
          Length = 877

 Score = 40.4 bits (93), Expect = 0.80,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 75/229 (32%), Gaps = 27/229 (11%)

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM-----IRA 179
           F QE   V     ++  + +++  + + +        G + +     T++       + +
Sbjct: 591 FNQESRNVYKDYKQLELSAETLDEVDSWKA--SFLRAGVYPERNTDTTSAESSPQGDLGS 648

Query: 180 INPSVYKSAEAIRHLVAA-------AVPNLDMGDVT---VLDSTGKLLTANEMERNILGK 229
           ++P + +  E IR+LV +        + +L    +    V D+   + +         G 
Sbjct: 649 MDPQLERQVETIRNLVDSYMGIITKTIRDLVPKTIMHMIVNDTKEFIQSEMLAHLYSSGD 708

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
             S+++  +   E    + +            ++ ++NM T        +P      S  
Sbjct: 709 QASMME--ESATEAQRREEMLRMYHSLKEALKIIGDINMTTVS------EPCPPPVDSDS 760

Query: 290 LSKDAQRSETS--QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQS 336
                  S+    QP  + T +   P         P    + +++  Q 
Sbjct: 761 WLPPPSPSQNRGLQPPPSPTRQLAPPTSPTSGRVSPGGSPSLNRRPSQR 809


>gi|190894993|ref|YP_001985286.1| D-amino acid dehydrogenase small subunit [Rhizobium etli CIAT 652]
 gi|218516485|ref|ZP_03513325.1| D-amino acid dehydrogenase small subunit [Rhizobium etli 8C-3]
 gi|190700654|gb|ACE94736.1| D-amino-acid dehydrogenase protein, small subunit [Rhizobium etli
           CIAT 652]
 gi|327193284|gb|EGE60190.1| D-amino-acid dehydrogenase protein, small subunit [Rhizobium etli
           CNPAF512]
          Length = 422

 Score = 40.4 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 50/132 (37%), Gaps = 12/132 (9%)

Query: 51  LYVKLEVSDVNRI-SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNS 109
           L+   +  D +     AL+   I + + D    I V  ++    R  +   GL +    +
Sbjct: 140 LFRTQQQLDASAKDVKALAADGIPYEVLDQDGCIRVEPALRH-VREKIVG-GLLTPKDET 197

Query: 110 GYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA 169
           G + F   N+        E   VR   G    TI+++  + A RV  V+ D     +   
Sbjct: 198 G-DCFKFTNALAA---QAEALGVRFAYG---TTIKALD-VEAGRVRGVVTDRDP-DRERQ 248

Query: 170 RPTASVMIRAIN 181
           R  A  ++ A+ 
Sbjct: 249 RMRAEAVVVALG 260


>gi|330501227|ref|YP_004378096.1| methyl-accepting chemotaxis protein [Pseudomonas mendocina NK-01]
 gi|328915513|gb|AEB56344.1| methyl-accepting chemotaxis protein [Pseudomonas mendocina NK-01]
          Length = 658

 Score = 40.4 bits (93), Expect = 0.82,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 42/129 (32%), Gaps = 4/129 (3%)

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI---NALVFLVGTLLVTFLGLHAL 460
           D     +M F         ++    +  ++    T +   +AL  L+  + V +L    L
Sbjct: 274 DEFYSVAMPFAGGPWTVLASMPREEIQAVTWRVGTQLAIGSALTLLLAVIAVVWLLRRKL 333

Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520
           R L ++    +    G       P S     G +      +  +   + +  R+    ++
Sbjct: 334 RPLGDLVQQAQALGAGHLGARMAPSSDD-EIGELARSFNRMGEALASMVAGIRSAAQDVS 392

Query: 521 SYVSKQSDL 529
           +     S L
Sbjct: 393 ARSQAMSTL 401


>gi|149058250|gb|EDM09407.1| dynamin 3, isoform CRA_b [Rattus norvegicus]
          Length = 442

 Score = 40.4 bits (93), Expect = 0.82,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 82/233 (35%), Gaps = 28/233 (12%)

Query: 125 FMQEITRVRALEGEIA-RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
             Q          E+A  + + +    A+ +   +    SF +      A     +++P 
Sbjct: 181 TEQRNVYKDYRSLELACDSQEDVDSWKASLLRAGVYPDKSFTENDENGQAENF--SMDPQ 238

Query: 184 VYKSAEAIRHLVAA-------AVPNLDMGDVT--VLDS-----TGKLLT---ANEMERNI 226
           + +  E IR+LV +        + +L    +   ++++       +LL    ++E +  +
Sbjct: 239 LERQVETIRNLVDSYMSIINKCIRDLIPKTIMHLMINNVKDFINSELLAQLYSSEDQNTL 298

Query: 227 LGKSLSIVQAIQHEIE--MNINKALAAFLGVDNFRSAVVA--ELNMDTQQIREIVYDPDS 282
           + +S+   Q     +     + +ALA    ++    +  A   ++    Q       P  
Sbjct: 299 MEESVEQAQRRDEMLRMYQALKEALAIIGDINTVTVSTPAPPPVDDSWLQHSRRSPPPSP 358

Query: 283 KVERSIRLSKDAQRSETSQPESA----VTVEQNMPHVSDRKVPLPRSLENTDK 331
             +R + LS    R  +S+  +            P V  R  PLP    ++D 
Sbjct: 359 TTQRRLTLSAPLPRPASSRGPAPAIPSPGPHSGAPPVPFRPGPLPPFPNSSDS 411


>gi|320531921|ref|ZP_08032829.1| UvrD/REP helicase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320135863|gb|EFW27903.1| UvrD/REP helicase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 886

 Score = 40.4 bits (93), Expect = 0.85,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 10/108 (9%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKA 93
           ++   A  +  S     L      + ++ I+  L EA + + I   G  + VP   V   
Sbjct: 430 VIAFLAERWSPSAEMAVL--CRTRAQMDPIAAELEEAGLPYTIVGLGGMLYVPE--VADV 485

Query: 94  RIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
           R  L       S    G  +   +  FG+ +       + AL  E+ R
Sbjct: 486 RALLTVA----SDPERGDRVVRLLTGFGIGASDLRA--LAALARELTR 527


>gi|326771896|ref|ZP_08231181.1| UvrD/REP helicase [Actinomyces viscosus C505]
 gi|326638029|gb|EGE38930.1| UvrD/REP helicase [Actinomyces viscosus C505]
          Length = 1142

 Score = 40.4 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 38/108 (35%), Gaps = 10/108 (9%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKA 93
           ++   A  +  S     L      + ++ I+  L  A + + I   G  + VP   V   
Sbjct: 431 VVAFLAERWSPSAEMAVL--CRTRAQMDPIAAELEAAGLPYTIIGLGGMLYVPE--VADV 486

Query: 94  RIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
           R  L A     S    G  +   +  FG+ +       + +L  E+ R
Sbjct: 487 RALLTAA----SDPERGDRVVRLLTGFGIGARDLRA--LASLARELTR 528


>gi|166999370|ref|ZP_02265209.1| type III secretion protein [Burkholderia mallei PRL-20]
 gi|238563894|ref|ZP_04610787.1| type III secretion protein [Burkholderia mallei GB8 horse 4]
 gi|238519737|gb|EEP83205.1| type III secretion protein [Burkholderia mallei GB8 horse 4]
 gi|243064444|gb|EES46630.1| type III secretion protein [Burkholderia mallei PRL-20]
          Length = 187

 Score = 40.4 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 49 DNLYVKLEVSDVNRISVALSEANIDF-RISDNGS---SISVPSSMVGKARIHL 97
            LY  L   D N +  AL +  +D  + + +G    +++V    + KA   L
Sbjct: 36 QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVL 88


>gi|71651860|ref|XP_814598.1| pyruvate dehydrogenase (lipoamide) kinase [Trypanosoma cruzi strain
           CL Brener]
 gi|70879586|gb|EAN92747.1| pyruvate dehydrogenase (lipoamide) kinase, putative [Trypanosoma
           cruzi]
          Length = 231

 Score = 40.0 bits (92), Expect = 0.93,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 11/105 (10%)

Query: 95  IHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ-EITRVRALEGE----IARTIQSISGI 149
           + LAA+ +      +  ++ D V  + LTS    E+ +  AL+ E    + R +  I  +
Sbjct: 44  MALAAEAIAKERQRAKGDI-DVVMEYPLTSEEFVELNQFYALQKEKRLPL-RNMMHIRNV 101

Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHL 194
               VH  +       ++  R  A      + P       +I+ L
Sbjct: 102 EDLYVHAKIIHREYLVRLAQRARA----LTLAPMGLSQMPSIQEL 142


>gi|116198433|ref|XP_001225028.1| hypothetical protein CHGG_07372 [Chaetomium globosum CBS 148.51]
 gi|88178651|gb|EAQ86119.1| hypothetical protein CHGG_07372 [Chaetomium globosum CBS 148.51]
          Length = 1017

 Score = 40.0 bits (92), Expect = 0.94,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 63/218 (28%), Gaps = 24/218 (11%)

Query: 126 MQEITRVRALEG--EIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRAINP 182
             +I   RA E   E+   ++ +  +    V         +    A+   A    +    
Sbjct: 633 QNKIQEKRAEESTCELEAQLRELEAVPEKLVKEHRAKHDEWASEKAKFDKARASFKTFKS 692

Query: 183 SVYKSAEAI----------RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS 232
           S+ K  +A+          R+ +AA +  +D     + D+  + L   E  R       +
Sbjct: 693 SIDKQIKALDEEKATLQAKRNKIAARIAKVDDEHARITDANARGLNEAERRRQERANLAA 752

Query: 233 IVQAIQHEIEMNINKA-LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            +   +  +   +    L          +             +E  YD   +        
Sbjct: 753 ELARAEQNLRDRVQALRLNNATKQAQVHAMAAHMQEYLASFQKEPTYDMGPQP------- 805

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT 329
                  ++ P + +   Q  P  +   V +P S   T
Sbjct: 806 ---NHFTSAGPWATIPAPQFNPQPAWPPVSMPMSTHAT 840


>gi|126433866|ref|YP_001069557.1| adenylyl cyclase class-3/4/guanylyl cyclase [Mycobacterium sp. JLS]
 gi|126233666|gb|ABN97066.1| adenylyl cyclase class-3/4/guanylyl cyclase [Mycobacterium sp. JLS]
          Length = 1053

 Score = 40.0 bits (92), Expect = 0.99,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 77/204 (37%), Gaps = 15/204 (7%)

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD------------TIT 407
           AV  +K  +   +    ++  ID  LAE +++V     +    GD             I 
Sbjct: 706 AVAGDKASVAIAMAGLVNEQLIDGTLAEASRLVDDQMVLLESIGDPTLTVGLALFPAAIK 765

Query: 408 ITSMDFLENQLFNSGTVQVSFMD-ILSRHFATVINALVFLVGTLLVTFLGLHALRR--LH 464
           I   +F E        + ++  D  L  +      AL + +      +LG    RR    
Sbjct: 766 ILIGEFAEALRTCDMVIDLAHDDPALGGYVLGAPLALAYAMRCTACWWLGRPGWRRDFDR 825

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
            ++ A + +   ++ +      +A+ +G++  D+ AL +S++ +    R+       +  
Sbjct: 826 AVEMAGEADPISRAAVMIYTYGNAIASGVIAADDAALRNSDEALDIAQRSADDIAYGFAL 885

Query: 525 KQSDLRLLHMIEINEERFAKILRK 548
             S   LL       +R  ++LR+
Sbjct: 886 FASAGVLLDHPSGRTKRAVELLRQ 909


>gi|323159999|gb|EFZ45963.1| lipoprotein prgK [Escherichia coli E128010]
 gi|323162552|gb|EFZ48402.1| lipoprotein prgK [Escherichia coli E128010]
 gi|323163401|gb|EFZ49228.1| lipoprotein prgK [Escherichia coli E128010]
          Length = 178

 Score = 40.0 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/109 (10%), Positives = 40/109 (36%), Gaps = 2/109 (1%)

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
               +         ++   +   ++     A+E  + ++++ + GI+++RVH+       
Sbjct: 10  PGKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIISSRVHVSYDVDNG 69

Query: 164 FRKIGARPTASVMIRAINPSVYKSAEA--IRHLVAAAVPNLDMGDVTVL 210
                A P    ++      +    +   I+  +     ++   +++V+
Sbjct: 70  DSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNNSASVQYENISVV 118


>gi|270488958|ref|ZP_06206032.1| conserved domain protein [Yersinia pestis KIM D27]
 gi|270337462|gb|EFA48239.1| conserved domain protein [Yersinia pestis KIM D27]
          Length = 92

 Score = 40.0 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 4/85 (4%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSS-ISVPSSM 89
           ++  +     ++    + LY  L   + N++   L    I+   +I  +G   ++V    
Sbjct: 7   MLAIVLMTLSLSGCDME-LYSGLSEGEANQMLALLMLHQINAEKQIEKSGMVGLTVDKRQ 65

Query: 90  VGKARIHLAAQGLPSSSSNSGYELF 114
              A   L   G P     +  ELF
Sbjct: 66  FINAVELLRQNGFPRQRFITVDELF 90


>gi|19553805|ref|NP_601807.1| two-component system, sensory transduction histidine kinase
           [Corynebacterium glutamicum ATCC 13032]
 gi|62391445|ref|YP_226847.1| two component sensor kinase [Corynebacterium glutamicum ATCC 13032]
 gi|21325378|dbj|BAB99999.1| Two-component system, sensory transduction histidine kinases
           [Corynebacterium glutamicum ATCC 13032]
 gi|41326786|emb|CAF21268.1| probable two component sensor kinase [Corynebacterium glutamicum
           ATCC 13032]
          Length = 485

 Score = 40.0 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 43/131 (32%), Gaps = 14/131 (10%)

Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV--TFLGL 457
            + GD IT+             G       ++L R     +     ++  +L+   FL  
Sbjct: 158 EKNGDIITVV------------GKSMGRETNLLYRLVMVQMIIGALILVAILITSLFLVR 205

Query: 458 HALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS 517
            +LR L  +++      GG      P        G + N    +    Q     ++  ++
Sbjct: 206 RSLRPLREVEETATRIAGGDLDRRVPQWPMTTEVGQLSNALNIMLEQLQASILTAQQKEA 265

Query: 518 RINSYVSKQSD 528
           ++  +V   S 
Sbjct: 266 QMRRFVGDASH 276


>gi|145296602|ref|YP_001139423.1| hypothetical protein cgR_2510 [Corynebacterium glutamicum R]
 gi|140846522|dbj|BAF55521.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 485

 Score = 40.0 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 43/131 (32%), Gaps = 14/131 (10%)

Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV--TFLGL 457
            + GD IT+             G       ++L R     +     ++  +L+   FL  
Sbjct: 158 EKNGDIITVV------------GKSMGRETNLLYRLVMVQMIIGALILVAILITSLFLVR 205

Query: 458 HALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS 517
            +LR L  +++      GG      P        G + N    +    Q     ++  ++
Sbjct: 206 RSLRPLREVEETATRIAGGDLDRRVPQWPMTTEVGQLSNALNIMLEQLQASILTAQQKEA 265

Query: 518 RINSYVSKQSD 528
           ++  +V   S 
Sbjct: 266 QMRRFVGDASH 276


>gi|218780299|ref|YP_002431617.1| rhomboid family protein [Desulfatibacillum alkenivorans AK-01]
 gi|218761683|gb|ACL04149.1| Rhomboid family protein [Desulfatibacillum alkenivorans AK-01]
          Length = 285

 Score = 39.6 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 48  YDNLY-VKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAA---QG 101
              L+   L  +  N   + L  + I +    ++ G  I VP     +A   + A   + 
Sbjct: 1   MTPLFIKNLPDNKANLYGLILEASKIAYEFKRAEEGWQILVPQKDHDRAFAQITAYTGEN 60

Query: 102 LPSSSSNSGYELFDKVNSF 120
           LP       +  F   +  
Sbjct: 61  LPQDLDEPEWPQFKTYSGL 79


>gi|145521690|ref|XP_001446697.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124414181|emb|CAK79300.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1670

 Score = 39.6 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/178 (10%), Positives = 61/178 (34%), Gaps = 15/178 (8%)

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTV----------LDSTGKLLTANEMERNILGKSLSIVQ 235
           K  E  + ++  +V   +  +V+V          ++   K+++  + +     ++     
Sbjct: 22  KQNEQTQQIIGNSVE--EKKEVSVSEQSNIINQEIEQVNKIISTKDEKNQTTNETTKQTN 79

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            +         K        +        ++  + + I +         + S +     Q
Sbjct: 80  DVISTTNREAQKTNETIQQSNKVDQQKDLKIQQNDKVINQTGETTQRSNQASQQTDSTIQ 139

Query: 296 RSETSQPESAVTVEQN---MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
           ++  SQ ++   ++QN   +    +      +S++ T++  +Q+N  +   +     +
Sbjct: 140 KTNKSQQQTDEIIQQNNNSIQQTDEIIQQSNKSIQQTNETSQQNNKAVQQTNETIQQN 197


>gi|221502463|gb|EEE28190.1| conserved hypothetical protein [Toxoplasma gondii VEG]
          Length = 671

 Score = 39.6 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 75/232 (32%), Gaps = 24/232 (10%)

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             AR+  + +G   +S                +   +E   V A +G+ AR + S  G  
Sbjct: 204 DDARVLTSGEGKEKASVA----FQGDDARVLTSDKEKEKVSV-AFQGDDARVLTSGEGKE 258

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDM------ 204
            A V     D         +  ASV  +  +  V  S E      + A    D       
Sbjct: 259 KASVAFQGDDARVLTSGEGKEKASVAFQGDDARVLTSGEGKEK-ASVAFQGDDARVLTSD 317

Query: 205 ---GDVTVLDS--TGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
               +V+V       ++LT++E +  +         +   +    I   L      +  R
Sbjct: 318 KEKENVSVASQGDDARVLTSDEGDAGLDAAPRQEDGSFNLQSIQRIVDELKK--EQEAAR 375

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311
            +   E    T++I E      ++   + +  KD   SE    ES V+  Q 
Sbjct: 376 GSTTDEPQQKTEEITE-----GAEARETEQKVKDFVYSEGVDMESYVSGSQG 422


>gi|221482158|gb|EEE20519.1| hypothetical protein TGGT1_125960 [Toxoplasma gondii GT1]
          Length = 671

 Score = 39.6 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 75/232 (32%), Gaps = 24/232 (10%)

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             AR+  + +G   +S                +   +E   V A +G+ AR + S  G  
Sbjct: 204 DDARVLTSGEGKEKASVA----FQGDDARVLTSDKEKEKVSV-AFQGDDARVLTSGEGKE 258

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDM------ 204
            A V     D         +  ASV  +  +  V  S E      + A    D       
Sbjct: 259 KASVAFQGDDARVLTSGEGKEKASVAFQGDDARVLTSGEGKEK-ASVAFQGDDARVLTSD 317

Query: 205 ---GDVTVLDS--TGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
               +V+V       ++LT++E +  +         +   +    I   L      +  R
Sbjct: 318 KEKENVSVASQGDDARVLTSDEGDAGLDAAPRQEDGSFNLQSIQRIVDELKK--EQEAAR 375

Query: 260 SAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQN 311
            +   E    T++I E      ++   + +  KD   SE    ES V+  Q 
Sbjct: 376 GSTTDEPQQKTEEITE-----GAEARETEQKVKDFVYSEGVDMESYVSGSQG 422


>gi|239816714|ref|YP_002945624.1| amino acid adenylation domain protein [Variovorax paradoxus S110]
 gi|239803291|gb|ACS20358.1| amino acid adenylation domain protein [Variovorax paradoxus S110]
          Length = 1358

 Score = 39.6 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 15/97 (15%)

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
            G +    +I   R   GE+A  I+ + G+  A V           + GA+ +A  ++RA
Sbjct: 882 LGRSDDQVKIRGYRVEPGEVAGRIRELDGVADAVVV---------AEQGAQESA--VLRA 930

Query: 180 I---NPSVYKSAEAIRHLVAAAVPN-LDMGDVTVLDS 212
                P      E +RH +A ++P  +    + +LD+
Sbjct: 931 YVVARPGTSLDVEELRHALADSLPAWMVPERIVLLDA 967


>gi|323704192|ref|ZP_08115771.1| sporulation protein YqfD [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323536258|gb|EGB26030.1| sporulation protein YqfD [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 401

 Score = 39.6 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 13/84 (15%)

Query: 17  LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76
           L R R+L+L ++  V +    +   +              +S+ + I   L +  +   +
Sbjct: 86  LKRRRMLVLGAIACVILAYIFSMFIWSIEID-----GGQNISEAS-IISELDKLGLKAGV 139

Query: 77  SDNGSSI-------SVPSSMVGKA 93
             +  +I        V    V   
Sbjct: 140 LKSSVNIHKIQQEFLVDEKDVAWI 163


>gi|225464214|ref|XP_002265023.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 662

 Score = 39.6 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 2/83 (2%)

Query: 255 VDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPH 314
             N+ S V  +L+ +  QI E    PDS V    R+  +   S  +Q  S+ T  +    
Sbjct: 11  FGNYTSEVSVDLDRERHQILEEADSPDSSVV--ERVLPEMAESPKNQTSSSATSGEVQTE 68

Query: 315 VSDRKVPLPRSLENTDKKEEQSN 337
                V    S +      E  N
Sbjct: 69  FEPELVGGSGSDDRASDSREGVN 91


>gi|291397423|ref|XP_002715664.1| PREDICTED: dynamin 3-like isoform 1 [Oryctolagus cuniculus]
          Length = 863

 Score = 39.6 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 62/177 (35%), Gaps = 25/177 (14%)

Query: 180 INPSVYKSAEAIRHLVAA-------AVPNLDMGDVT--VLDS-----TGKLLTA--NEME 223
           ++P + +  E IR+LV +        + +L    +   ++++       +LL    +  +
Sbjct: 645 MDPQLERQVETIRNLVDSYMSIINKCIRDLIPKTIMHLMINNVKDFINSELLAQLYSSED 704

Query: 224 RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE-----LNMDTQQIREIVY 278
           +N L +  +     + E+         A + + +  +A V+      ++    Q      
Sbjct: 705 QNTLMEESAEQAQRRDEMLRMYQALKEALVIIGDINTATVSTPAPPPVDDSWIQHSRRSP 764

Query: 279 DPDSKVERSIRLSKDAQRSETSQPESA----VTVEQNMPHVSDRKVPLPRSLENTDK 331
            P    +R   LS    R  + +  +            P V  R  PLP    ++D 
Sbjct: 765 PPSPTAQRRPTLSAPLPRPTSGRGPAPAIPSPGPHSGAPPVPFRPGPLPPFPNSSDS 821


>gi|291397425|ref|XP_002715665.1| PREDICTED: dynamin 3-like isoform 2 [Oryctolagus cuniculus]
          Length = 859

 Score = 39.6 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 62/177 (35%), Gaps = 25/177 (14%)

Query: 180 INPSVYKSAEAIRHLVAA-------AVPNLDMGDVT--VLDS-----TGKLLTA--NEME 223
           ++P + +  E IR+LV +        + +L    +   ++++       +LL    +  +
Sbjct: 641 MDPQLERQVETIRNLVDSYMSIINKCIRDLIPKTIMHLMINNVKDFINSELLAQLYSSED 700

Query: 224 RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE-----LNMDTQQIREIVY 278
           +N L +  +     + E+         A + + +  +A V+      ++    Q      
Sbjct: 701 QNTLMEESAEQAQRRDEMLRMYQALKEALVIIGDINTATVSTPAPPPVDDSWIQHSRRSP 760

Query: 279 DPDSKVERSIRLSKDAQRSETSQPESA----VTVEQNMPHVSDRKVPLPRSLENTDK 331
            P    +R   LS    R  + +  +            P V  R  PLP    ++D 
Sbjct: 761 PPSPTAQRRPTLSAPLPRPTSGRGPAPAIPSPGPHSGAPPVPFRPGPLPPFPNSSDS 817


>gi|108798209|ref|YP_638406.1| adenylate/guanylate cyclase [Mycobacterium sp. MCS]
 gi|119867305|ref|YP_937257.1| adenylyl cyclase class-3/4/guanylyl cyclase [Mycobacterium sp. KMS]
 gi|108768628|gb|ABG07350.1| adenylate/guanylate cyclase [Mycobacterium sp. MCS]
 gi|119693394|gb|ABL90467.1| adenylyl cyclase class-3/4/guanylyl cyclase [Mycobacterium sp. KMS]
          Length = 1050

 Score = 39.2 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 79/200 (39%), Gaps = 15/200 (7%)

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD------------TITITSM 411
           +K  +   +G   ++  ID  LAE +++    T +    GD             + + + 
Sbjct: 707 DKASVAIAMGGLINEQLIDGRLAEASQLADELTVLLESIGDPTLTVGLALFPAAVKVQTG 766

Query: 412 DFLENQLFNSGTVQVSFMD-ILSRHFATVINALVFLVGTLLVTFLGLHALRR--LHNIDD 468
           +FLE        ++++  D +L  +      AL   +      +LG    RR     +  
Sbjct: 767 EFLEVNRCCDLVIELAHDDPVLGGYVIGAPLALALAIRCTAAWWLGRPGWRRDFDRAVAM 826

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
           A + +   ++ +     ++A+ +G++  D+ AL +S + +    R++      +    S 
Sbjct: 827 AAEADPISRAAVMIYTYTNAIASGVIAADDAALHNSEEALAVTQRSVDDIAYGFALYGSA 886

Query: 529 LRLLHMIEINEERFAKILRK 548
             L+       ER  ++LR+
Sbjct: 887 GVLIDSGSGQRERAVELLRQ 906


>gi|90424870|ref|YP_533240.1| methyl-accepting chemotaxis sensory transducer [Rhodopseudomonas
           palustris BisB18]
 gi|90106884|gb|ABD88921.1| methyl-accepting chemotaxis sensory transducer [Rhodopseudomonas
           palustris BisB18]
          Length = 567

 Score = 39.2 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 45/119 (37%), Gaps = 1/119 (0%)

Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISS 487
                +   + ++ ALV L+   +  F+     + LH + DA K   GGK  ++ P I  
Sbjct: 188 EQTWTATQRSLIVAALVVLITLAVSIFMAGRITKPLHLMTDAMKALAGGKLDVAVPGIGR 247

Query: 488 AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546
           +   G M  + + +  +N          Q  + +  + Q       + +  E    +I+
Sbjct: 248 SDEVGEMA-EAVEVFKTNAVARQRLEAEQHELEARAAAQRKADTNKLADDFEGAVGEII 305


>gi|86132960|ref|ZP_01051550.1| two-component system sensor histidine kinase [Dokdonia donghaensis
           MED134]
 gi|85816478|gb|EAQ37666.1| two-component system sensor histidine kinase [Dokdonia donghaensis
           MED134]
          Length = 464

 Score = 39.2 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 56/125 (44%), Gaps = 5/125 (4%)

Query: 402 RGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461
           RGD+I+I+S DF E +      V      +L R +  ++ +++  +  + + +  +  L 
Sbjct: 175 RGDSISISSYDF-EVRTTQEIQVPNWKSLVLKRMWVLIVGSIILFLFVIGLLYYSIKNLI 233

Query: 462 RLHNIDDAKKGEVGGKS-ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520
               I + K   +   +  L  P  +  + T  + N+ I    SN D F+++  +  R N
Sbjct: 234 TQKKIAEVKTDFINNVTHELKTPLATLGIATKSLRNEAI---KSNPDSFNNTLGIVERQN 290

Query: 521 SYVSK 525
           S + K
Sbjct: 291 SRLQK 295


>gi|254499034|ref|ZP_05111729.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
 gi|254351745|gb|EET10585.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
          Length = 275

 Score = 39.2 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 16/88 (18%)

Query: 17 LGRTRI-LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
          + + RI LIL   +LV + L+     + + P    LY  +++ DV          N+ FR
Sbjct: 1  MPKKRITLILGISVLVILALYYTVTKWYSPPQRLTLYGNVDIRDV----------NLSFR 50

Query: 76 ISDNGSSISVPS-SMVGK----ARIHLA 98
          +S   S ++V     V +    ARI  A
Sbjct: 51 VSGRLSELTVDEGDDVHQGQLIARIDSA 78


>gi|330953275|gb|EGH53535.1| type III secretion component [Pseudomonas syringae Cit 7]
          Length = 128

 Score = 39.2 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 155 HIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA--EAIRHLVAAAVPNLDMGDVTVL 210
           H+V+PD    +++ +  +ASV++R  +P    +     I+ LVA  +  L    V+V 
Sbjct: 2   HVVLPDNDLLKRVISPSSASVLVR-YDPRTDINVLIPQIKTLVANGISGLGYDGVSVT 58


>gi|146292927|ref|YP_001183351.1| phenylalanyl-tRNA synthetase subunit beta [Shewanella putrefaciens
           CN-32]
 gi|145564617|gb|ABP75552.1| phenylalanyl-tRNA synthetase beta subunit [Shewanella putrefaciens
           CN-32]
          Length = 795

 Score = 38.9 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 76/190 (40%), Gaps = 15/190 (7%)

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424
                    R +D  + D  L  +  ++  A G            +  F++ +L N    
Sbjct: 475 PNTAPVAALRMSDHKESDLSLKRVRALLV-ARGFQEA-------VTYSFVDPKLQNLVHP 526

Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG-----EVGGKSI 479
               M +L    ++ ++A+   + T L+  +G +  R+   +   + G     ++  +S 
Sbjct: 527 GEQAM-VLPNPISSEMSAMRLSMFTGLLAAVGYNQSRQQSRVRLFETGLRFVPDINAESG 585

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS-DLRLLHMIEIN 538
           +    + + V TGL  +++ A++S   D F    +L++ I   VS      R+     ++
Sbjct: 586 VRQQAMLACVITGLQNDEHWAMESKTVDFFDLKGDLEAIIGLTVSASEFSFRVATHSALH 645

Query: 539 EERFAKILRK 548
             + A+ILR 
Sbjct: 646 PGQCAEILRN 655


>gi|120598988|ref|YP_963562.1| phenylalanyl-tRNA synthetase subunit beta [Shewanella sp. W3-18-1]
 gi|120559081|gb|ABM25008.1| phenylalanyl-tRNA synthetase beta subunit [Shewanella sp. W3-18-1]
          Length = 795

 Score = 38.9 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 76/190 (40%), Gaps = 15/190 (7%)

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424
                    R +D  + D  L  +  ++  A G            +  F++ +L N    
Sbjct: 475 PNTAPVAALRMSDHKESDLSLKRVRALLV-ARGFQEA-------VTYSFVDPKLQNLVHP 526

Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG-----EVGGKSI 479
               M +L    ++ ++A+   + T L+  +G +  R+   +   + G     ++  +S 
Sbjct: 527 GEQAM-VLPNPISSEMSAMRLSMFTGLLAAVGYNQSRQQSRVRLFETGLRFVPDINAESG 585

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS-DLRLLHMIEIN 538
           +    + + V TGL  +++ A++S   D F    +L++ I   VS      R+     ++
Sbjct: 586 VRQQAMLACVITGLQNDEHWAMESKTVDFFDLKGDLEAIIGLTVSASEFSFRVATHSALH 645

Query: 539 EERFAKILRK 548
             + A+ILR 
Sbjct: 646 PGQCAEILRN 655


>gi|319426544|gb|ADV54618.1| phenylalanyl-tRNA synthetase, beta subunit [Shewanella putrefaciens
           200]
          Length = 795

 Score = 38.9 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 76/190 (40%), Gaps = 15/190 (7%)

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424
                    R +D  + D  L  +  ++  A G            +  F++ +L N    
Sbjct: 475 PNTAPVAALRMSDHKESDLSLKRVRALLV-ARGFQEA-------VTYSFVDPKLQNLVHP 526

Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG-----EVGGKSI 479
               M +L    ++ ++A+   + T L+  +G +  R+   +   + G     ++  +S 
Sbjct: 527 GEQAM-VLPNPISSEMSAMRLSMFTGLLAAVGYNQSRQQSRVRLFETGLRFVPDINAESG 585

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS-DLRLLHMIEIN 538
           +    + + V TGL  +++ A++S   D F    +L++ I   VS      R+     ++
Sbjct: 586 VRQQAMLACVITGLQNDEHWAMESKTVDFFDLKGDLEAIIGLTVSASEFSFRVATHSALH 645

Query: 539 EERFAKILRK 548
             + A+ILR 
Sbjct: 646 PGQCAEILRN 655


>gi|167589966|ref|ZP_02382354.1| flagellar MS-ring protein [Burkholderia ubonensis Bu]
          Length = 86

 Score = 38.9 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 10/94 (10%)

Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519
           LRR H  D     ++ G+    P P  + V  GL   +  A +     +     N + R 
Sbjct: 2   LRRRHRHD-----QLHGRDRRGPAPEDAVVLDGLPAPEKAAANEDADALLLGFENEKHRY 56

Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
              +          +   + +  A +++ W   E
Sbjct: 57  ERNLDYA-----RTIARQDPKIVATVVKSWVNDE 85


>gi|332095487|gb|EGJ00503.1| flagellar M-ring protein domain protein [Shigella dysenteriae
           155-74]
          Length = 70

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 2/65 (3%)

Query: 493 LMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL--RLLHMIEINEERFAKILRKWA 550
                   ++ + +   S    LQ R  +       +  R+  M + +    A ++R+W 
Sbjct: 6   QQAQAREEVEDAVEVRLSKDEQLQQRRANQRLGTEVMSQRIREMSDNDPRVVALVIRQWI 65

Query: 551 RSEIE 555
            ++ E
Sbjct: 66  NNDHE 70


>gi|326778076|ref|ZP_08237341.1| copper resistance protein CopC [Streptomyces cf. griseus XylebKG-1]
 gi|326658409|gb|EGE43255.1| copper resistance protein CopC [Streptomyces cf. griseus XylebKG-1]
          Length = 648

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 59/187 (31%), Gaps = 18/187 (9%)

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           SIA+ V+   L  V         +   L     I SAA     RR  T+   S+  L   
Sbjct: 317 SIAMPVDVAHLLAVAAWLGGLASLLVALYRTPDIGSAAV----RRFSTVAFASVVVLAAT 372

Query: 418 LFNSGTVQVSFMDILS--RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
                  QV     L+  R+   +I  +  +   L V +       RL +   +   E  
Sbjct: 373 GIYQSWRQVGSWSALTGTRYGQLLIIKVALIAVLLAVAWFSRRWTARLTDTAASSDAEGA 432

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
                   P  ++           A D ++ D+        +R  + ++     R+    
Sbjct: 433 TAEDAPTGPEETSPA---------ASDETSDDVAPERAAQLARQRAVLTATKKKRIR--- 480

Query: 536 EINEERF 542
           + + ER 
Sbjct: 481 DADPERS 487


>gi|182437420|ref|YP_001825139.1| putative integral membrane protein [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178465936|dbj|BAG20456.1| putative integral membrane protein [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 648

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 59/187 (31%), Gaps = 18/187 (9%)

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           SIA+ V+   L  V         +   L     I SAA     RR  T+   S+  L   
Sbjct: 317 SIAMPVDVAHLLAVAAWLGGLASLLVALYRTPDIGSAAV----RRFSTVAFASVVVLAAT 372

Query: 418 LFNSGTVQVSFMDILS--RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
                  QV     L+  R+   +I  +  +   L V +       RL +   +   E  
Sbjct: 373 GIYQSWRQVGSWSALTGTRYGQLLIIKVALIAVLLAVAWFSRRWTARLTDTAASSDAEGA 432

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
                   P  ++           A D ++ D+        +R  + ++     R+    
Sbjct: 433 TAEDAPTGPEETSPA---------ASDETSDDVAPERAAQLARQRAVLTATKKKRIR--- 480

Query: 536 EINEERF 542
           + + ER 
Sbjct: 481 DADPERS 487


>gi|318061179|ref|ZP_07979900.1| 2-isopropylmalate synthase [Streptomyces sp. SA3_actG]
 gi|318078980|ref|ZP_07986312.1| 2-isopropylmalate synthase [Streptomyces sp. SA3_actF]
          Length = 601

 Score = 38.5 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 9/76 (11%)

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-SAEAI 191
           +A E  I RT++S+ G   A VH+       FR+        V+ R     + K + E  
Sbjct: 138 QAREELIERTVESLVGARRANVHLYNATAPVFRE--------VVFRGSKEDIKKIAVEGT 189

Query: 192 RHLVAAAVPNLDMGDV 207
           RH+VA A   L    V
Sbjct: 190 RHVVAYAEKLLGPETV 205


>gi|302518979|ref|ZP_07271321.1| 2-isopropylmalate synthase [Streptomyces sp. SPB78]
 gi|302427874|gb|EFK99689.1| 2-isopropylmalate synthase [Streptomyces sp. SPB78]
          Length = 601

 Score = 38.5 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 9/76 (11%)

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-SAEAI 191
           +A E  I RT++S+ G   A VH+       FR+        V+ R     + K + E  
Sbjct: 138 QAREELIERTVESLVGARRANVHLYNATAPVFRE--------VVFRGSKEDIKKIAVEGT 189

Query: 192 RHLVAAAVPNLDMGDV 207
           RH+VA A   L    V
Sbjct: 190 RHVVAYAEKLLGPETV 205


>gi|90422764|ref|YP_531134.1| methyl-accepting chemotaxis sensory transducer [Rhodopseudomonas
           palustris BisB18]
 gi|90104778|gb|ABD86815.1| methyl-accepting chemotaxis sensory transducer [Rhodopseudomonas
           palustris BisB18]
          Length = 567

 Score = 38.5 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 43/116 (37%), Gaps = 1/116 (0%)

Query: 431 ILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVT 490
             S   + +   ++ L+   +  F+     + LH + DA K   GG+  ++ P +     
Sbjct: 191 WASTQRSLIAATVILLITLAVSVFMAGRITKPLHRMTDAMKALAGGRLDVAIPGVGRNDE 250

Query: 491 TGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546
            G M  + +A+  +N          Q  + +  + Q       + +  E    +I+
Sbjct: 251 IGEMA-EAVAVFKTNAVERQRLEAEQKELEARAAAQRKADTSRLADDFETAVGEII 305


>gi|255024647|ref|ZP_05296633.1| flagellar MS-ring protein [Listeria monocytogenes FSL J1-208]
          Length = 109

 Score = 38.5 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 34/96 (35%), Gaps = 13/96 (13%)

Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519
           L+R   +++A + E         P   + +     P+ N   D+   D+       +   
Sbjct: 27  LKRKEQLEEALEPEEKD----YIPAEEAIINPEEHPDFNFQTDAF--DLSEPEIKAR--- 77

Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
                +    +L  M + +  R A +++KW     E
Sbjct: 78  ----KESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 109


>gi|254854546|ref|ZP_05243894.1| predicted protein [Listeria monocytogenes FSL R2-503]
 gi|258607946|gb|EEW20554.1| predicted protein [Listeria monocytogenes FSL R2-503]
          Length = 124

 Score = 38.5 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 13/96 (13%)

Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519
           L+R   +++A + E         P   + +     P+ N   D+ +         L++R 
Sbjct: 42  LKRKEQLEEALEPEEKD----YIPAEEAIINPEEHPDFNFQTDAFD----LSEPELKAR- 92

Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
                +    +L  M + +  R A +++KW     E
Sbjct: 93  ----KESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 124


>gi|333027193|ref|ZP_08455257.1| putative 2-isopropylmalate synthase [Streptomyces sp. Tu6071]
 gi|332747045|gb|EGJ77486.1| putative 2-isopropylmalate synthase [Streptomyces sp. Tu6071]
          Length = 601

 Score = 38.5 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 9/76 (11%)

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-SAEAI 191
           +A E  I RT++S+ G   A VH+       FR+        V+ R     + K + E  
Sbjct: 138 QAREELIERTVESLVGARRANVHLYNATAPVFRE--------VVFRGSKDDIKKIAVEGT 189

Query: 192 RHLVAAAVPNLDMGDV 207
           RH+VA A   L    V
Sbjct: 190 RHVVAYAEKLLGPETV 205


>gi|325679546|ref|ZP_08159126.1| conserved domain protein [Ruminococcus albus 8]
 gi|324108833|gb|EGC03069.1| conserved domain protein [Ruminococcus albus 8]
          Length = 240

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 42/119 (35%), Gaps = 12/119 (10%)

Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISS 487
           + + ++ +  T  +  + +   LL  FL            DAK+ E   +  +  P    
Sbjct: 92  WGEGIASNIGTGWSVGITIAAVLLALFL-------FSGGTDAKEPETPQRGAVKQPSTLG 144

Query: 488 AVTTGLMP---NDNIALDSSNQDIFSHSRNLQ--SRINSYVSKQSDLRLLHMIEINEER 541
            +         +D  +   ++ ++ S+  +    ++I        + R   M E +E R
Sbjct: 145 LLGRAAFATFLDDAFSPPDTSINMSSYEPHYDNSAQIRQQQLDAENARKKQMAEEDERR 203


>gi|24639970|ref|NP_572262.1| CG3108 [Drosophila melanogaster]
 gi|22831771|gb|AAF46083.2| CG3108 [Drosophila melanogaster]
 gi|54650714|gb|AAV36936.1| LP17541p [Drosophila melanogaster]
          Length = 1132

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 72/217 (33%), Gaps = 20/217 (9%)

Query: 197 AAVPNLDMGDVTVLD--------------STGKLLTANEMERNILGKSLSIVQAIQHEIE 242
           +AV  L+      +D                G+  + ++ E+      +     ++ + E
Sbjct: 209 SAVEELEKESEAAMDDQVPEESEIQPEQVQPGEYQSESDGEQAETKPEIEAQPEVEAQPE 268

Query: 243 MNINKALAAFLGVD-NFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
                     L V+         E+    +   +   +P S+VE        ++    ++
Sbjct: 269 AEAQPEAEPQLEVEPQPEVESQPEVESQPEVEAQPEVEPQSEVESQPEAESHSEPETQAE 328

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA--TTHDNYKLERLSI 359
            E+   VE      S  +       E   + E+ S+ E++T   +   T      + L+ 
Sbjct: 329 VEAQPEVESLPEAESQPEAESQPEREPEVEAEKISDNEVDTTEASLMETLVEGIEDGLTA 388

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT 396
           A+      + E L  ++D+ + +    +    V+ A 
Sbjct: 389 AM---DNLVPEELAEASDKQETELESEDQQSPVTEAI 422


>gi|227834014|ref|YP_002835721.1| two-component system sensor kinase [Corynebacterium aurimucosum
           ATCC 700975]
 gi|262183499|ref|ZP_06042920.1| two-component system sensor kinase [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227455030|gb|ACP33783.1| two-component system sensor kinase [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 483

 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 33/90 (36%)

Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498
           +I ALV L+  L+  +L   ALR L  ++        G      P        G +    
Sbjct: 182 IIAALVMLIIALVGMWLIHRALRPLRVVEKTASQIAAGNLDKRVPEWPPHTEVGQLAAAL 241

Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
             +    Q+   H++  + ++  +V   S 
Sbjct: 242 NVMLGRLQNSVVHAQEKEQQMRRFVGDASH 271


>gi|116181216|ref|XP_001220457.1| predicted protein [Chaetomium globosum CBS 148.51]
 gi|88185533|gb|EAQ93001.1| predicted protein [Chaetomium globosum CBS 148.51]
          Length = 361

 Score = 38.1 bits (87), Expect = 3.7,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 44/143 (30%), Gaps = 12/143 (8%)

Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDM-G 205
            G     VH        + +     +   ++  +      +  A   L      NL    
Sbjct: 214 DGKQQQTVHAA--HEPLWVRDPRTKSEGYVLIPLEAGGPGTYNATLSL-----SNLARLE 266

Query: 206 DVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE 265
           DV+++D +G L+     E N  G S S     Q  ++  +              ++V   
Sbjct: 267 DVSIVDGSGGLVW----ESNAAGSSSSSFTNGQRSLQYKVQDDTQDLFVAAKAATSVSVS 322

Query: 266 LNMDTQQIREIVYDPDSKVERSI 288
                  + +    PDS   RS+
Sbjct: 323 AVFTATNVAQATTVPDSAASRSM 345


>gi|157692371|ref|YP_001486833.1| resistance-nodulation-cell division acriflavin:proton (H+)
           antiporter [Bacillus pumilus SAFR-032]
 gi|157681129|gb|ABV62273.1| RND superfamily resistance-nodulation-cell division:proton (H+)
           antiporter [Bacillus pumilus SAFR-032]
          Length = 1039

 Score = 38.1 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 86/223 (38%), Gaps = 24/223 (10%)

Query: 139 IARTIQSISG---IVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLV 195
           ++R I+   G   + +A   +       + K  A+         +N  + KS E ++ + 
Sbjct: 439 LSRAIEQTDGVSKVRSATRPVGKGLSDLYVKSQAK--------ELNTGLDKSNEGLKKIQ 490

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255
            A    L     ++ D T ++ ++ +    ++  + S+   IQ+ IE ++ +  +     
Sbjct: 491 DA----LTTMSQSIEDQTPQIKSSGKGINKLISGTESVKTGIQN-IEKSLRELQSGIDQN 545

Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD-------AQRSETSQPESAVTV 308
            N  + +  ++    +++   V   + +V     +SK+          S ++  +    +
Sbjct: 546 KNGVAQIKEKIKGAKKELTAQVAQVNQQVSLYKSISKELKAALAKVDTSSSAAADVKALI 605

Query: 309 EQNMPHVSDRKVPLPRSLENTDKKEEQSNY-EINTKSIATTHD 350
            Q     S  +  +P+  EN   +  +++Y E++T        
Sbjct: 606 TQANQQFSTLEKQIPQVKENQSYQAIKASYNELSTTLQEGAKQ 648


>gi|59713368|ref|YP_206143.1| hypothetical protein VF_A0185 [Vibrio fischeri ES114]
 gi|59481616|gb|AAW87255.1| hypothetical protein VF_A0185 [Vibrio fischeri ES114]
          Length = 579

 Score = 38.1 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 67/223 (30%), Gaps = 30/223 (13%)

Query: 222 MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD 281
            + ++    +S    ++  +  +I +         N        L++  + IRE V    
Sbjct: 27  AQTSLQLDQMSFTAELEQRLNSDIERI-----AGKNIHV-----LSIQAEFIREEVDAST 76

Query: 282 SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEIN 341
           SK   + +  +         PE       +  + +        S E   +++   N +++
Sbjct: 77  SKPIVAKQKPEVKNVIMDDAPELPGLAGMSAFNKNTAAKVSTVSEEVEQQEDALDNEQVS 136

Query: 342 TKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR 401
                       +  LS  ++++     +                 I  ++      N  
Sbjct: 137 KTEK-------MIRSLSTTLLLDNSVDKDTELL-------------IRNLLLEKLEYNPM 176

Query: 402 RGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALV 444
           RGD + I  MD          ++   +  ++      VI  L+
Sbjct: 177 RGDRLEIIRMDMAPVSEITGSSIAHYWWVLVLLLLLLVIGYLL 219


>gi|218458071|ref|ZP_03498162.1| D-amino acid dehydrogenase small subunit [Rhizobium etli Kim 5]
          Length = 273

 Score = 38.1 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 48/132 (36%), Gaps = 12/132 (9%)

Query: 51  LYVKLEVSDVNRI-SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNS 109
           L+   +  D +     AL+   I + + D    I V  ++    R  +   GL +    +
Sbjct: 140 LFRTQQQLDASAKDVKALAADGIPYEVLDRDGCIRVEPALRH-VRDKIVG-GLLTPKDET 197

Query: 110 GYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA 169
           G + F   N+    +    +            TI+++  + A RV  V+       +   
Sbjct: 198 G-DCFKFTNALAAKAEALGVRFAYGT------TIKALD-VEAGRVRGVVTARDP-DRERE 248

Query: 170 RPTASVMIRAIN 181
           R +A  ++ A+ 
Sbjct: 249 RMSADAVVVALG 260


>gi|321474561|gb|EFX85526.1| hypothetical protein DAPPUDRAFT_314091 [Daphnia pulex]
          Length = 1042

 Score = 38.1 bits (87), Expect = 4.1,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 67/215 (31%), Gaps = 29/215 (13%)

Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVT-VLD 211
           R H          +    P  +V++R  +P   +  +   +  ++++  +    V  VL 
Sbjct: 23  RPHCQFRHEHLPVRA---PKPTVVLRTHDPGPSQGIQEGEN--SSSIEQIVSEAVKRVLK 77

Query: 212 STGKLLTANEMER--NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
             G+LL   +  +   ++G         Q ++   + + LA  +             +  
Sbjct: 78  ENGQLLENFDASKIMELVG---------QQKLVEKVVEHLAPPVSPKKVEGNPRESSHKS 128

Query: 270 TQQIREIV------YDPDSKVE--RSIRLSKDAQRSETSQPESAVTV---EQNMPHVSDR 318
                  +      Y P       + I      +  E ++P S         +       
Sbjct: 129 KSHKSYNIPVGTPAYTPTPIAVLKKGITTPSKVENYEPTKPSSGRVATYKPSSKVAAKSE 188

Query: 319 KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
           +   P +LE+T       NY +   S  ++   YK
Sbjct: 189 ETYTPSTLESTSVPSRVDNY-VPRNSSTSSTATYK 222


>gi|194014791|ref|ZP_03053408.1| RND superfamily resistance-nodulation-cell division:proton
           [Bacillus pumilus ATCC 7061]
 gi|194013817|gb|EDW23382.1| RND superfamily resistance-nodulation-cell division:proton
           [Bacillus pumilus ATCC 7061]
          Length = 1039

 Score = 38.1 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 84/223 (37%), Gaps = 24/223 (10%)

Query: 139 IARTIQSISG---IVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLV 195
           ++R I+   G   + +A   +       + K  A+         +N  + KS E ++ + 
Sbjct: 439 LSRAIEQTDGVSKVRSATRPVGKGLSDLYVKSQAK--------ELNTGLDKSNEGLKKIQ 490

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255
            A    L     ++ D T ++ ++ +    ++  + S+   IQ+ IE ++          
Sbjct: 491 DA----LTTMSQSIEDQTPQIKSSGKGINKLISGTESVKTGIQN-IEKSLRDLQGGIDQN 545

Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD-------AQRSETSQPESAVTV 308
            N  + +  ++    +++   V   + +V     +SK+          S ++  +    +
Sbjct: 546 KNGVAQIKEKIKGAKKELTTQVAQVNQQVSLYKSISKELKAALAQVDTSSSAAADVKALI 605

Query: 309 EQNMPHVSDRKVPLPRSLENTDKKEEQSNY-EINTKSIATTHD 350
            Q     S  +  +P+  EN   +  +++Y E++T        
Sbjct: 606 TQANKQFSTLEKQIPQVKENQSYQAIKASYNELSTTLQEGAKQ 648


>gi|326203777|ref|ZP_08193640.1| NLPA lipoprotein [Clostridium papyrosolvens DSM 2782]
 gi|325986217|gb|EGD47050.1| NLPA lipoprotein [Clostridium papyrosolvens DSM 2782]
          Length = 269

 Score = 38.1 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 41/95 (43%), Gaps = 11/95 (11%)

Query: 78  DNGSSISVPSSMVGKAR--IHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135
            +G++I+VP+    +AR  + L   GL   +  +G++   K     +T   + I  ++ L
Sbjct: 124 ADGATIAVPNDTTNEARALLLLETAGLIKVNPTAGFKATVKD----ITQNPKNIK-IKEL 178

Query: 136 E-GEIARTIQSISGIVAARVHIVMPDMGSFRKIGA 169
           E  ++ART   +  +  A ++        F     
Sbjct: 179 EAAQLART---LPDVDVAVINGNFALQAGFNVEKD 210


>gi|134096875|ref|YP_001102536.1| oligopeptide ABC transporter ATP-binding protein [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291006682|ref|ZP_06564655.1| oligopeptide ABC transporter ATP-binding protein [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133909498|emb|CAL99610.1| oligopeptide ABC transporter ATP-binding protein [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 330

 Score = 38.1 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 4/112 (3%)

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGL--PSSSSNSGYELFDKVNSFGLTSFMQ 127
             I F +    +   V  S  GK+   LA  GL  P  +  SG   FD     GL+    
Sbjct: 25  DGISFDVEPGRTVGLVGESGCGKSVTSLAIMGLLPPRGAEVSGSITFDGTELLGLSRQEL 84

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIV--MPDMGSFRKIGARPTASVMI 177
           +  R R L       + S++ +V+  V +   +       +  A P A  ++
Sbjct: 85  DKRRGRDLSMVFQDPLTSLNPVVSIGVQVAEVIERHRGLPRKKAMPEAEELL 136


>gi|118365979|ref|XP_001016208.1| hypothetical protein TTHERM_00125290 [Tetrahymena thermophila]
 gi|89297975|gb|EAR95963.1| hypothetical protein TTHERM_00125290 [Tetrahymena thermophila
           SB210]
          Length = 2228

 Score = 38.1 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 39/293 (13%), Positives = 100/293 (34%), Gaps = 44/293 (15%)

Query: 81  SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140
           S++ +P     +  ++ +   + + ++  G     K      ++F+     +R LE  + 
Sbjct: 82  SNVMLPFDDNNQNMLNNSQNNINTQTNIMGNNNQKKELVVPSSTFLHNKNTIRYLEDSLT 141

Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVP 200
             I+ +  I    ++  +    +F++          +  I      S    ++ +     
Sbjct: 142 YLIKQL--ISQEIMNHFLYCQSTFQQQRQ-----SSMNMIGGGNRNSNNTSQNNI----- 189

Query: 201 NLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRS 260
            +   + T++     L+T N +         +  + ++ +        LA     +  + 
Sbjct: 190 -IVTQNNTLITQNNTLVTQNNLITGNNKTQATNNKNVKAQ--------LAPI-SSERGQI 239

Query: 261 AVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE------------------TSQP 302
              +    D  ++ E++ +  +KV +   ++ ++  S                    + P
Sbjct: 240 ETSSG-KFDINRLEEMISNNQTKVTQPNAITNNSNVSNKRQQQSNLFQKKQQRGQKQNNP 298

Query: 303 ESAVTVEQNMPHVSDRK--VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
              + V+ N     +    +  P++  NTD    Q N   N+K I  T DN  
Sbjct: 299 SGLMQVKGNNSQAVNNNQTINDPKTKMNTDNMTSQ-NLLYNSKEIQETIDNGS 350


>gi|208434825|ref|YP_002266491.1| vacuolating cytotoxin (VacA)-like protein [Helicobacter pylori G27]
 gi|208432754|gb|ACI27625.1| vacuolating cytotoxin (VacA)-like protein [Helicobacter pylori G27]
          Length = 2506

 Score = 38.1 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 76/237 (32%), Gaps = 22/237 (9%)

Query: 174 SVMIRAINPSVYKSAEAIRH--LVAA--AVPNLDMGDVTVLDSTGKLLTAN----EMERN 225
           S++ + +   + + A+      L  +  A+ N+   +    + T    + N    +  + 
Sbjct: 413 SIITQFLGDDLQQQAQKTYQEDLTHSQNALNNVTSDNTIANNDTSYTQSKNATIAKDAQG 472

Query: 226 ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVE 285
           +   +  I Q  +  +E ++ +            S          +Q  E     + K  
Sbjct: 473 LENTNQKIAQD-EQALEKDLAQI-KQLANSTTGFSEQAFTQAQKQEQQDEQTLQNEEKTF 530

Query: 286 RSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSI 345
            S +        +    +     +Q              +L N     + +N + +    
Sbjct: 531 NSEQEGLKQAIQQAQAQQQKQEQQQAQQTYQQDLSNSQSALNNAASDSKIANSDTDYT-- 588

Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSA-DQGKIDSYLAEINKIVSAATGINSR 401
                    +  + A+  +   L     + A D+  ++  LA+I ++ ++ TG + +
Sbjct: 589 ---------KNKNTAIATDAQNLENTNQQIAQDEQALEKDLAQIKQLANSTTGFSEQ 636


>gi|120556077|ref|YP_960428.1| peptidase M23B [Marinobacter aquaeolei VT8]
 gi|120325926|gb|ABM20241.1| peptidase M23B [Marinobacter aquaeolei VT8]
          Length = 366

 Score = 37.7 bits (86), Expect = 4.6,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 71/186 (38%), Gaps = 18/186 (9%)

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
              + +  +RA E E+A T++        R ++ +    ++ +  A     V++  I P 
Sbjct: 68  EQQERLAELRAQESELANTLEQQ------RENLKLQIRAAWMEGDAPALK-VLLNEIEPG 120

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEM 243
               A  + +        L    V+ L++  + L   +  R  +  + + +   + ++E 
Sbjct: 121 EV--ARTLTYY-----EYLSKNTVSRLEAFQRSLQELKAARAAVQATRTELAKTEADLEQ 173

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
              +   +       R+  +A LN D Q  R      ++  +R  +L K+ Q++  S P 
Sbjct: 174 RQQQLTQS----KQDRTRTLAALNDDIQNRRSERQSLEADRQRLEQLLKEVQQAIASIPA 229

Query: 304 SAVTVE 309
              +  
Sbjct: 230 PNESSP 235


>gi|300780835|ref|ZP_07090689.1| cell division protein FtsZ [Corynebacterium genitalium ATCC 33030]
 gi|300532542|gb|EFK53603.1| cell division protein FtsZ [Corynebacterium genitalium ATCC 33030]
          Length = 429

 Score = 37.7 bits (86), Expect = 5.1,   Method: Composition-based stats.
 Identities = 42/236 (17%), Positives = 83/236 (35%), Gaps = 29/236 (12%)

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
           SF  +    +ALEG     I+++  +      IV+P+    +   A  +     RA +  
Sbjct: 134 SFEGKRRTRQALEG-----IEALKEV--CDTVIVIPNDRLLQLGDAELSMMEAFRAADEV 186

Query: 184 VYKSAEAIRHLVAAAVPNL---DMGDV-TVLDSTGKLLTANEMERNILGKSLSIVQAI-- 237
           +Y   + I +L+   +P +   D  DV +V+   G  L      R       +  QAI  
Sbjct: 187 LYNGVQGITNLIT--IPGMINVDFADVRSVMADAGSALMGVGSARGENRVMAATEQAINS 244

Query: 238 ---QHEIEMNINKALA-------AFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS 287
              +  +E      ++         + V+N  S V  + + D   I   + D +   E  
Sbjct: 245 PLLETTMEGAKGVLISVAGGSDLGLMEVNNAASIVEEKADDDANIIFGTIIDDNLGDEVR 304

Query: 288 IRLSKDAQRSETSQPESAVTVEQNM----PHVSDRKVPLPRSLENTDKKEEQSNYE 339
           + +       + +         + +        +   P P S    + +EE  +Y+
Sbjct: 305 VTIIATGFDEKANARPDRTGAPEQVVVEAEPAQETPTPAPSSSSLFEPREETRDYD 360


>gi|18766202|gb|AAL78898.1|AF435854_1 merozoite surface protein-9 precursor [Plasmodium cynomolgi]
          Length = 818

 Score = 37.7 bits (86), Expect = 5.1,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 63/182 (34%), Gaps = 2/182 (1%)

Query: 199 VPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNF 258
           V ++    V + D    ++        +  +  + V     ++E  + K +     V   
Sbjct: 537 VEHMAHDMVNMEDVVEDVVEEVAQMEEVAAEVATEVAEEVAQMEEIVQKVVNEAAYVVQE 596

Query: 259 RSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDR 318
            +  V E+        + V  P++  E      +    +     E    V +N+   ++ 
Sbjct: 597 VANAVEEVADAVDDTAQGVDTPENVFEVGTEEVEAVPENAEVGTEEVEAVPENVEVGTEE 656

Query: 319 KVPLPRSLENTDKKEEQS--NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA 376
           +  +P + E   ++EE    N E+ T+      +N ++   +  VV    ++       A
Sbjct: 657 EEAVPENAEVGTEEEEAVPENAEVGTEEEEAVPENGEVAPENTEVVPENAKVVPENAEVA 716

Query: 377 DQ 378
            +
Sbjct: 717 PE 718


>gi|50555427|ref|XP_505122.1| YALI0F07513p [Yarrowia lipolytica]
 gi|49650992|emb|CAG77929.1| YALI0F07513p [Yarrowia lipolytica]
          Length = 1184

 Score = 37.7 bits (86), Expect = 5.2,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 79/237 (33%), Gaps = 29/237 (12%)

Query: 53  VKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA-----QGLPSSSS 107
             ++  +V R+   L    +   +        V       AR+ LA      Q L   S 
Sbjct: 691 GGVDEKEVERVKGELE--KVRHELEVATEQAGVAKKDADTARMELAGVKRERQDLQRESD 748

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
               +L  +    G  +   E  +V      +  T++S+     + +   M  +      
Sbjct: 749 TLREDLETRNVELGTRNVELETKKVEV--SSLTATVESLKA-EVSSLQASMNQI------ 799

Query: 168 GARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTG-KLLTANEMERNI 226
                A+VM+   +  +   A  I  LV   +       V + +       +A+E+E+ +
Sbjct: 800 -----ATVMV---DHDIDVEAMTIPQLVLELLNERQALHVRISEQESISRSSASELEQKL 851

Query: 227 LGKSLSIV--QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD 281
              +L +   +    ++E  ++ AL+    + N  + V+           E  +  D
Sbjct: 852 TETTLQLQLREQFTDDLEAQLDDALSRIEHMGNHEARVMEL--TRQLTQFEEQFSND 906


>gi|288921547|ref|ZP_06415821.1| histidine kinase [Frankia sp. EUN1f]
 gi|288347064|gb|EFC81367.1| histidine kinase [Frankia sp. EUN1f]
          Length = 414

 Score = 37.7 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 53/141 (37%), Gaps = 10/141 (7%)

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
           ++  +   L  +    V +M +  R    V+  L+     + V +L    L R   +  A
Sbjct: 136 ALAVIPPGLLAAPITYVVWMIVDPRWLWFVL--LLLSGPAVYVWWLVTPPLVRARAV--A 191

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK--QS 527
           ++  +GG  +         VT+        ALD S  +I    R+L     + ++    S
Sbjct: 192 ERAILGGSRVAELQRRVERVTSSRSS----ALDHSAAEIRRIERDLHDGAQARIAAVGMS 247

Query: 528 DLRLLHMIEINEERFAKILRK 548
                 ++E +     ++LR+
Sbjct: 248 VGLAEKLVEQDPAAAVELLRE 268


>gi|62484220|ref|NP_608435.2| uncoordinated [Drosophila melanogaster]
 gi|53680463|gb|AAU89434.1| uncoordinated [Drosophila melanogaster]
 gi|61677918|gb|AAF50849.3| uncoordinated [Drosophila melanogaster]
          Length = 1386

 Score = 37.7 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 32/110 (29%), Gaps = 7/110 (6%)

Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL 515
           G  A RR+    +  +    G+     P   + VT G      +          +     
Sbjct: 71  GDPARRRMTQSRERLQATGLGRPGPCGPSNITRVTRGSSLPPEVGAHGYRTGRPTRKHVP 130

Query: 516 QSRINSYVSKQSDLR-------LLHMIEINEERFAKILRKWARSEIEDRY 558
             +        SD R       L  +  ++E+ F    R+W   E   R 
Sbjct: 131 IPQDQIEEQDDSDARAERLRQQLEELAAMSEQEFEVKFRQWLDQEGIARE 180


>gi|302692326|ref|XP_003035842.1| hypothetical protein SCHCODRAFT_51554 [Schizophyllum commune H4-8]
 gi|300109538|gb|EFJ00940.1| hypothetical protein SCHCODRAFT_51554 [Schizophyllum commune H4-8]
          Length = 147

 Score = 37.3 bits (85), Expect = 6.0,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 4/87 (4%)

Query: 165 RKIGARPTASVMIRAINPSVYKSAEAIRHLVAAA--VPNLDMGDVTVLDSTGKLLTANEM 222
           ++     T+S +++A+ P +    +A ++LV A   +P L   DV V    G L  + E 
Sbjct: 24  QRRRGEGTSSDVVQALKPRMDLHEDAEKNLVTATFELPGLKKEDVQVNLQNGLLTVSGET 83

Query: 223 ERNILGKSLSIVQAIQHEIEMNINKAL 249
           +     +        +      I++ L
Sbjct: 84  KSESDKEEQGYAVR-ERRY-GKISRTL 108


>gi|329946360|ref|ZP_08293927.1| UvrD/REP helicase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328527336|gb|EGF54334.1| UvrD/REP helicase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 1146

 Score = 37.3 bits (85), Expect = 6.2,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 9/91 (9%)

Query: 32  PIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVG 91
            +  F+A R +        L      + +  I+  L  A + + I   G  + VP   V 
Sbjct: 426 TVAAFLAER-WSPGAEMAVL--CRTRTQMEPIAAELEAAGLPYTIVGLGGMLYVPE--VA 480

Query: 92  KARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
             R  L A     S    G  +   +  FG+
Sbjct: 481 DVRALLTAA----SDPERGDRVVRLLTGFGI 507


>gi|269975940|ref|ZP_06182944.1| integral membrane sensor signal transduction histidine kinase
           [Mobiluncus mulieris 28-1]
 gi|306817268|ref|ZP_07451014.1| phosphate regulon sensor histidine kinase protein PhoR [Mobiluncus
           mulieris ATCC 35239]
 gi|269935768|gb|EEZ92298.1| integral membrane sensor signal transduction histidine kinase
           [Mobiluncus mulieris 28-1]
 gi|304649948|gb|EFM47227.1| phosphate regulon sensor histidine kinase protein PhoR [Mobiluncus
           mulieris ATCC 35239]
          Length = 521

 Score = 37.3 bits (85), Expect = 6.2,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 12/121 (9%)

Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497
            +   ++ +VGT L   L   A R LH I+        G      PP  +    G + N 
Sbjct: 165 MISTLIIAMVGTFLSNILVGRAFRPLHQIESVANKIAAGDLSKRIPPAPTTTEVGSLSNS 224

Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDL------------RLLHMIEINEERFAKI 545
              + S  +  FS     + ++  +VS  S               L  M  +  ER A++
Sbjct: 225 LNIMLSHLEQAFSAVELSERKMRRFVSDASHELRTPTAAIRGYAELYRMGGVEPERQAEV 284

Query: 546 L 546
           +
Sbjct: 285 M 285


>gi|227876376|ref|ZP_03994488.1| periplasmic sensor signal transduction histidine kinase [Mobiluncus
           mulieris ATCC 35243]
 gi|227842917|gb|EEJ53114.1| periplasmic sensor signal transduction histidine kinase [Mobiluncus
           mulieris ATCC 35243]
          Length = 515

 Score = 37.3 bits (85), Expect = 6.4,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 12/121 (9%)

Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497
            +   ++ +VGT L   L   A R LH I+        G      PP  +    G + N 
Sbjct: 159 MISTLIIAMVGTFLSNILVGRAFRPLHQIESVANKIAAGDLSKRIPPAPTTTEVGSLSNS 218

Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDL------------RLLHMIEINEERFAKI 545
              + S  +  FS     + ++  +VS  S               L  M  +  ER A++
Sbjct: 219 LNIMLSHLEQAFSAVELSERKMRRFVSDASHELRTPTAAIRGYAELYRMGGVEPERQAEV 278

Query: 546 L 546
           +
Sbjct: 279 M 279


>gi|9632606|ref|NP_049805.1| gp29 baseplate hub subunit, tail length determinator
           [Enterobacteria phage T4]
 gi|137988|sp|P13337|VG29_BPT4 RecName: Full=Tail-tube assembly protein Gp29; AltName:
           Full=Folylpolyglutamate synthase; AltName: Full=Tail
           length regulator; AltName:
           Full=Tetrahydrofolylpolyglutamate synthase
 gi|5354230|gb|AAD42437.1|AF158101_24 gp29 baseplate hub subunit, tail length determinator
           [Enterobacteria phage T4]
 gi|215946|gb|AAA32538.1| tail-tube assembly protein [Enterobacteria phage T4]
          Length = 590

 Score = 37.3 bits (85), Expect = 6.4,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 60/197 (30%), Gaps = 15/197 (7%)

Query: 167 IGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER 224
             A  +AS  +  +N    K   A+A   L+A  V       +  +D+    ++      
Sbjct: 22  QEAAKSASNTLSGLNDISTKLDDAQAASELIAQTVEEKSNEIIGAIDNVESAVSDTSAGS 81

Query: 225 NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV 284
            ++ +++ I   I  EI  ++   L     +   +          T         P    
Sbjct: 82  ELIAETVEIGNNINKEIGESLGSKLDKLTSLLEQKIQTAGIQQTGTSLATVESAIP---- 137

Query: 285 ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKS 344
              +++ +D           A     N P       P P   +    +E+Q     N K 
Sbjct: 138 ---VKVVEDDTAESVGPLLPAPEAVNNDPDADFFPTPQPVEPKQESPEEKQKKEAFNLKL 194

Query: 345 IATTHDNYKLERLSIAV 361
                    L++L+  V
Sbjct: 195 SQ------ALDKLTKTV 205


>gi|221638303|ref|YP_002524565.1| mechanosensitive ion channel MscS [Rhodobacter sphaeroides KD131]
 gi|221159084|gb|ACM00064.1| MscS Mechanosensitive ion channel precursor [Rhodobacter
           sphaeroides KD131]
          Length = 787

 Score = 37.3 bits (85), Expect = 6.5,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 38/109 (34%)

Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISS 487
             +  SR     ++AL+ ++G L V FL +   + +      +   V  + + + PP   
Sbjct: 285 VEESTSRAAGRGVSALISVIGVLFVAFLVVRNRKAVAEWLLRETQPVSARHVAAEPPAPP 344

Query: 488 AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536
            VTT  +  D  A  ++           +    +        R   ++ 
Sbjct: 345 VVTTQEIDPDLAADIAAGTADAPPPPEAEPVEVTPEPHPRVRRSPALVA 393


>gi|126461318|ref|YP_001042432.1| MscS mechanosensitive ion channel [Rhodobacter sphaeroides ATCC
           17029]
 gi|126102982|gb|ABN75660.1| MscS Mechanosensitive ion channel [Rhodobacter sphaeroides ATCC
           17029]
          Length = 787

 Score = 37.3 bits (85), Expect = 6.5,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 38/109 (34%)

Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISS 487
             +  SR     ++AL+ ++G L V FL +   + +      +   V  + + + PP   
Sbjct: 285 VEESTSRAAGRGVSALISVIGVLFVAFLVVRNRKAVAEWLLRETQPVSARHVAAEPPAPP 344

Query: 488 AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536
            VTT  +  D  A  ++           +    +        R   ++ 
Sbjct: 345 VVTTQEIDPDLAADIAAGTADAPPPPEAEPVEVTPEPHPRVRRSPALVA 393


>gi|114568885|ref|YP_755565.1| hypothetical protein Mmar10_0334 [Maricaulis maris MCS10]
 gi|114339347|gb|ABI64627.1| integral membrane protein-like protein [Maricaulis maris MCS10]
          Length = 605

 Score = 37.3 bits (85), Expect = 6.7,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 67/185 (36%), Gaps = 26/185 (14%)

Query: 26  ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN----IDF-RISDNG 80
           A +  + I+  +A    +  P       ++  +D   I+  +   N    + F  +S  G
Sbjct: 94  ALIGALVIVAVIAGSQMLTRPGQ----SEMPTADAGAIADDIPSDNSIAVLPFLDLSPAG 149

Query: 81  SSISVPSSMVGKARIHLAA-QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEI 139
                   +  +    L   +GL  +S  S +    + ++ G+    + +     LEG +
Sbjct: 150 DQQYFSDGISEEILNVLVRIEGLDVTSRTSAF--QYRSDTMGVPEIAERLRVRHVLEGSV 207

Query: 140 AR---TIQSISGIVAAR--VHI-------VMPDMGSFRKIGARPTASVMIRAINPSVYKS 187
            R   TI+  + ++ AR  VH+        +     F        A  ++RA++  +   
Sbjct: 208 RRSGNTIRITAQLIDARTDVHLWSQTYDQSLTAENLFAIQDEIANA--IVRALSEVLDIQ 265

Query: 188 AEAIR 192
           A  I 
Sbjct: 266 APEIA 270


>gi|39974047|ref|XP_368414.1| hypothetical protein MGG_00830 [Magnaporthe oryzae 70-15]
 gi|145018231|gb|EDK02510.1| hypothetical protein MGG_00830 [Magnaporthe oryzae 70-15]
          Length = 635

 Score = 37.3 bits (85), Expect = 7.3,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 53/154 (34%), Gaps = 36/154 (23%)

Query: 280 PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVP----LPRSLENTDKKEE- 334
           P+    +     K+A  +++ QP        N+   +  + P     P   ++     + 
Sbjct: 323 PEGDFLKKKDKGKEAAAAQSGQPGQPGAAPDNLAPGAAGQPPVVLDNPSGGKSGSNSRQP 382

Query: 335 ---------QSNY----------EINTKSIATTHDN----YKLERLSIAVVVNKGRLTEV 371
                      +Y          +++   +    D     Y ++ +++A ++ KG +   
Sbjct: 383 SPFRQNMKPVYSYVKSRGFYAGVQVDGTVVTERKDANAAFYGVQGVTVAQIL-KGEVPPA 441

Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
            G +      D +   ++ IV  A G ++  GD 
Sbjct: 442 AGTA-----WDRHAKALHDIVRGAEGFSA--GDQ 468


>gi|86609671|ref|YP_478433.1| primosome assembly protein PriA [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558213|gb|ABD03170.1| primosomal protein N' [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 801

 Score = 37.3 bits (85), Expect = 7.5,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 49/145 (33%), Gaps = 13/145 (8%)

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
             +   G +   F  +L R     +  L  +V T+L   L   + RR+  +    +GE  
Sbjct: 61  EAVVAKGILPKEFWPLLQRVADYYLTPLAQVVRTVLPPGLLSRSQRRVRLLRLPAEGEEC 120

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL--- 532
             +  +   +  A   G +    +        +       +  + S+  +Q   R+    
Sbjct: 121 SPAAQTLLQLLQA-KGGELSWRYVQQQVPTAALALRELQRRGWVESFWQEQQGGRVRTQL 179

Query: 533 --HMIEINEE-------RFAKILRK 548
              + + + E       +  +IL++
Sbjct: 180 AASLADDSPEGLSLPQQKALQILKQ 204


>gi|257870588|ref|ZP_05650241.1| DNA mismatch repair protein [Enterococcus gallinarum EG2]
 gi|257804752|gb|EEV33574.1| DNA mismatch repair protein [Enterococcus gallinarum EG2]
          Length = 710

 Score = 37.3 bits (85), Expect = 7.7,   Method: Composition-based stats.
 Identities = 52/307 (16%), Positives = 106/307 (34%), Gaps = 44/307 (14%)

Query: 69  EANIDFRISDNGSSISVPS---------SMVGKARIHLAAQG-----LPSSSSNSGYELF 114
           E +I   +   G+ I+V +           V   +  LA  G     +  S     + L 
Sbjct: 132 EEHIPANLR-QGTKITVENLFYNTPARLKYVKTLQTELANIGDIVNRIALSHPEVAFRLV 190

Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS------FRKIG 168
            + N    T+            G++ +TI  I G+  A+  + +           +  + 
Sbjct: 191 HEGNKMLTTTG----------SGDLKQTIAGIYGVETAKKMLAINSEDLDFKLTGYVSLP 240

Query: 169 ARPTAS--VMIRAINPSVYKSAEAIRHLVAAAVPNLDMGD--VTVLDSTGKLLTANEMER 224
               AS   +   IN    ++    + +VA     L +G   + VL+ T   L    ++ 
Sbjct: 241 EVTRASRNYLSTIINGRYIRNFALNKAIVAGYGSKLMVGRFPIAVLEITMDPLL---VDV 297

Query: 225 NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV 284
           N+      +  + + E+   I+K++   L  +N        L    +   E V      +
Sbjct: 298 NVHPTKQEVRLSKEEELTKLISKSINDSLREENLIPNAADNLRFKKKVTTEPVEQTKLDL 357

Query: 285 ERSIRLS------KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNY 338
             S   S      ++  + + +      TV+  + +  +    LP S E  +K  E S Y
Sbjct: 358 GTSPTTSSGLTFNRETGKFQVASSGYQQTVDNFVENPVEEGGKLPESAEQREKAPESSAY 417

Query: 339 EINTKSI 345
            +  +++
Sbjct: 418 SVENQAV 424


>gi|116326412|ref|YP_803132.1| base plate hub [Enterobacteria phage RB32]
 gi|115344005|gb|ABI95014.1| base plate hub [Enterobacteria phage RB32]
          Length = 590

 Score = 37.3 bits (85), Expect = 7.7,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 60/197 (30%), Gaps = 15/197 (7%)

Query: 167 IGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER 224
             A  +AS  +  +N    K   A+A   L+A  V       +  +D+    ++      
Sbjct: 22  QEAAKSASNTLSGLNDISTKLDDAQAASELIAQTVEEKSNEIIGAIDNVESAVSDTTAGS 81

Query: 225 NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV 284
            ++ +++ I   I  EI  ++   L     +   +          T         P    
Sbjct: 82  ELIAETVEIGNNINKEIGESLGSKLDKLTSLLEQKIQTAGIQQTGTSLATVESAIP---- 137

Query: 285 ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKS 344
              +++ +D           A     N P       P P   +    +E+Q     N K 
Sbjct: 138 ---VKVVEDDTAESVGPLLPAPEAVNNDPDADFFPAPQPVEPKQESPEEKQKKEAFNLKL 194

Query: 345 IATTHDNYKLERLSIAV 361
                    L++L+  V
Sbjct: 195 SQ------ALDKLTKTV 205


>gi|42524410|ref|NP_969790.1| hypothetical protein Bd3014 [Bdellovibrio bacteriovorus HD100]
 gi|39576619|emb|CAE80783.1| fliG [Bdellovibrio bacteriovorus HD100]
          Length = 577

 Score = 37.3 bits (85), Expect = 7.7,   Method: Composition-based stats.
 Identities = 34/297 (11%), Positives = 88/297 (29%), Gaps = 69/297 (23%)

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           ++   E      L   L   ++   V  E++ D ++++E                     
Sbjct: 29  LETVYEARARSVLNTILRPTDYTLVVAIEMDRDEKKLKEFH------------------- 69

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
                 E  V     MP + D       + +  + K +                      
Sbjct: 70  -----DEMDVQYLPGMPLMGDAPTLGKATNKLHEMKSKTD-------------------- 104

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
             I+VV+++    E                 I +++++   +++  GD++T+  ++    
Sbjct: 105 --ISVVLSRNVNPETE-------------KIIKELLTSKLHLDATAGDSVTVKRIE--LP 147

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA--------LRRLHNIDD 468
                   +   +  L+    T+I  +  L  + L+ +             L+  H    
Sbjct: 148 ADPPKAEPKPDILPELTWKMWTLIVIMSLLALSGLMFWAWRRGRAQDPRKELKENHEYKH 207

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
            +K + G +        ++      +      +D+  Q I + +       +  V++
Sbjct: 208 TEKDQDGEEKPEEVVAAATEPAAAAVVEPQFNMDAVKQHILAIAAQYPQLASRAVTE 264


>gi|312371115|gb|EFR19375.1| hypothetical protein AND_22596 [Anopheles darlingi]
          Length = 1169

 Score = 36.9 bits (84), Expect = 8.4,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 86/259 (33%), Gaps = 24/259 (9%)

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN----ILGKSLSIVQAIQ 238
            +  + + ++ +   A+ N+  G  +     G   ++    R     +LG   +     Q
Sbjct: 309 GLVGTEKRVQRMAQGALLNISYGRASNGHQRGGKQSSAADVRTTHHIVLGNMSNNQNGPQ 368

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
             I+  +N+ +    G  N  +   ++   +       V  P     RS+   +  +   
Sbjct: 369 SSIQHRVNERIGKRNGTRNVPNEKASQQE-NRVSEPSTVNSP-----RSVTTQQATKHQP 422

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDK--KEEQSNY---EINTKSIATTHDNYK 353
             +  + +T   N+P    ++       E   K  KE  +N    E + K IA    N  
Sbjct: 423 MEKQAAILTTPNNVPSADIQQQQRKNEFERFWKKLKESTNNSAFDENDIKHIAQVMSNSA 482

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVS----AATGINSRRGDTITIT 409
           L+  SI V ++          +  Q   D     + K++        G + + GD     
Sbjct: 483 LQPESITVGLSDKTEKPQSVTTTVQPDGDQMTGMLKKMLRINDGQQEGKSQQTGD----- 537

Query: 410 SMDFLENQLFNSGTVQVSF 428
               ++  L +     + +
Sbjct: 538 GAPLVQPPLASLPKPPLQW 556


>gi|257063566|ref|YP_003143238.1| penicillin-binding protein, 1A family [Slackia heliotrinireducens
           DSM 20476]
 gi|256791219|gb|ACV21889.1| penicillin-binding protein, 1A family [Slackia heliotrinireducens
           DSM 20476]
          Length = 723

 Score = 36.9 bits (84), Expect = 8.5,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 48/118 (40%), Gaps = 6/118 (5%)

Query: 148 GIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDV 207
           G+  + V I + +     +   +P  ++ +     +  + A A   L A  V +  +  V
Sbjct: 447 GVSPSSV-IEIANRMGLNEDSLQPYPTITLGVFGVNTTQMASAYGTLAAGGVHHEPVAIV 505

Query: 208 TVLDSTGKL---LTANEMERNILGKSLSI--VQAIQHEIEMNINKALAAFLGVDNFRS 260
           T+ D+ G +   L+       ++ +S++    + ++  I  +I  A AA L      +
Sbjct: 506 TITDANGNVIEDLSEGSEGEQVISESVAYAVTRVLEGVITKSIGTANAAALPSGQVAA 563


>gi|307700390|ref|ZP_07637429.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Mobiluncus mulieris FB024-16]
 gi|307614375|gb|EFN93605.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Mobiluncus mulieris FB024-16]
          Length = 378

 Score = 36.9 bits (84), Expect = 8.7,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 12/121 (9%)

Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497
            +   ++ +VGT L   L   A R LH I+        G      PP  +    G + N 
Sbjct: 22  MISTLIIAMVGTFLSNILVGRAFRPLHQIESVANKIAAGDLSKRIPPAPTTTEVGSLSNS 81

Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDL------------RLLHMIEINEERFAKI 545
              + S  +  FS     + ++  +VS  S               L  M  +  ER A++
Sbjct: 82  LNIMLSHLEQAFSAVELSERKMRRFVSDASHELRTPTAAIRGYAELYRMGGVEPERQAEV 141

Query: 546 L 546
           +
Sbjct: 142 M 142


>gi|115523564|ref|YP_780475.1| methyl-accepting chemotaxis sensory transducer [Rhodopseudomonas
           palustris BisA53]
 gi|115517511|gb|ABJ05495.1| methyl-accepting chemotaxis sensory transducer [Rhodopseudomonas
           palustris BisA53]
          Length = 567

 Score = 36.9 bits (84), Expect = 8.8,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 43/116 (37%), Gaps = 1/116 (0%)

Query: 431 ILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVT 490
             S   + +  A+V L+  ++   +     + LH + DA K   GGK  +  P I  +  
Sbjct: 191 WASTQRSLIAAAVVLLISLVVSVIMAGRITKPLHRMTDAMKALAGGKLDVEVPGIGRSDE 250

Query: 491 TGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546
            G M  + + +  SN          Q  + +  + Q       +    E   ++I+
Sbjct: 251 IGEMA-EAVEVFKSNGIARQRLEAEQHELEARAAAQRKADTNKLANDFESAVSEII 305


>gi|326502008|dbj|BAK06496.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 551

 Score = 36.9 bits (84), Expect = 9.0,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 32/108 (29%), Gaps = 6/108 (5%)

Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPP----PISSAVTTGLMPNDNIALDSSNQDIFSH 511
           G   LRRL +       E    S  +P     P+       + P D         +    
Sbjct: 9   GARLLRRLLSTAAEVAREAAPPSAKNPKRAARPVGKRAARAVAPQDAKVAAHPAAEPAPD 68

Query: 512 SRNLQSRINSYVSKQSD--LRLLHMIEINEERFAKILRKWARSEIEDR 557
           + + +    +          RL  +    E   + +L KW R   E R
Sbjct: 69  AESAKKAAAAGTKDSRPLYRRLSALGNAGEGSVSAVLNKWLREGRETR 116


>gi|228861505|ref|YP_002854526.1| gp29 base plate hub [Enterobacteria phage RB14]
 gi|227438521|gb|ACP30834.1| gp29 base plate hub [Enterobacteria phage RB14]
          Length = 590

 Score = 36.9 bits (84), Expect = 9.5,   Method: Composition-based stats.
 Identities = 63/423 (14%), Positives = 121/423 (28%), Gaps = 61/423 (14%)

Query: 167 IGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER 224
             A  +AS  +  +N    K   A+A   L+A  V       +  +D+    ++      
Sbjct: 22  QEAAKSASNTLSGLNDISTKLDDAQAASELIAQTVEEKSNEIIGAIDNVESAVSDTTAGS 81

Query: 225 NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV 284
            ++ +++ I   I  EI  ++   L     +   +          T         P    
Sbjct: 82  ELIAETVEIGNNINKEIGESLGSKLDKLTSLLEQKIQTAGIQQTGTSLATVESAIP---- 137

Query: 285 ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKS 344
              +++ +D           A     N P       P P   +    +E+Q     N K 
Sbjct: 138 ---VKVVEDDTAESVGPLLPAPEAVNNDPDADFFPTPQPVEPKQESPEEKQKKEAFNLKL 194

Query: 345 IATTHDNYKLERLSIAV---------VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395
                    L++L+  V         + +K          +   +     A I  +V   
Sbjct: 195 SQ------ALDKLTKTVDFGFKKSISITDKISSMLFKYTVSAAIEAAKMTAMILAVV--- 245

Query: 396 TGIN-------------SRRGDTITITSMDFLENQLFNSGTVQVSFMD-------ILSRH 435
            GI+             S+  D        F          +Q  F           +  
Sbjct: 246 VGIDLLMVHFKYWSDKFSKAWDLFNTDFTKFSSETGTWGPLLQSIFDSIDKIKQLWEAGD 305

Query: 436 FATVINALVFLVGTLLVTFLGLHAL---------RRLHNIDDAKKGEVGGKSILSPPPIS 486
           +  +  A+V  +G++L     L  L          R+         EV G+++ +    +
Sbjct: 306 WGGLTAAIVEGLGSVLFNLGELIQLGMAKLSAAILRVIPGMKDTADEVEGRALENFQNST 365

Query: 487 SAVTTGLMPN--DNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR---LLHMIEINEER 541
            A           N      N D+   ++ L    N      + +R       +  +EER
Sbjct: 366 GASLNKEDQEKVANYQDKRMNGDLGPIAKGLDKIANWKTRASNWIRGVDNKEALTTDEER 425

Query: 542 FAK 544
            A+
Sbjct: 426 AAE 428


>gi|330858710|ref|YP_004415085.1| putative baseplate hub subunit and tail length determinator
           [Shigella phage Shfl2]
 gi|327397644|gb|AEA73146.1| putative baseplate hub subunit and tail length determinator
           [Shigella phage Shfl2]
          Length = 590

 Score = 36.9 bits (84), Expect = 9.7,   Method: Composition-based stats.
 Identities = 63/423 (14%), Positives = 121/423 (28%), Gaps = 61/423 (14%)

Query: 167 IGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER 224
             A  +AS  +  +N    K   A+A   L+A  V       +  +D+    ++      
Sbjct: 22  QEAAKSASNTLSGLNDISTKLDDAQAASELIAQTVEEKSNEIIGAIDNVESAVSDTTAGS 81

Query: 225 NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV 284
            ++ +++ I   I  EI  ++   L     +   +          T         P    
Sbjct: 82  ELIAETVEIGNNINKEIGESLGSKLDKLTSLLEQKIQTAGIQQTGTSLATVESAIP---- 137

Query: 285 ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKS 344
              +++ +D           A     N P       P P   +    +E+Q     N K 
Sbjct: 138 ---VKVVEDDTAESVGPLLPAPEAVNNDPDADFFPTPQPVEPKQESPEEKQKKEAFNLKL 194

Query: 345 IATTHDNYKLERLSIAV---------VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395
                    L++L+  V         + +K          +   +     A I  +V   
Sbjct: 195 SQ------ALDKLTKTVDFGFKKSISITDKISSMLFKYTVSAAIEAAKMTAMILAVV--- 245

Query: 396 TGIN-------------SRRGDTITITSMDFLENQLFNSGTVQVSFMD-------ILSRH 435
            GI+             S+  D        F          +Q  F           +  
Sbjct: 246 VGIDLLMVHFKYWSDKFSKAWDLFNTDFTKFSSETGTWGPLLQSIFDSIDKIKQLWEAGD 305

Query: 436 FATVINALVFLVGTLLVTFLGLHAL---------RRLHNIDDAKKGEVGGKSILSPPPIS 486
           +  +  A+V  +G++L     L  L          R+         EV G+++ +    +
Sbjct: 306 WGGLTAAIVEGLGSVLFNLGELIQLGMAKLSAAILRVIPGMKDTADEVEGRALENFQNTT 365

Query: 487 SAVTTGLMPN--DNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR---LLHMIEINEER 541
            A           N      N D+   ++ L    N      + +R       +  +EER
Sbjct: 366 GASLNKEDQEKVANYQDKRMNGDLGPIAKGLDKIANWKTRASNWIRGVDNKEALTTDEER 425

Query: 542 FAK 544
            A+
Sbjct: 426 AAE 428


>gi|299780553|gb|ADJ39915.1| baseplate hub subunit tail length determinator [Enterobacteria
           phage T4T]
          Length = 590

 Score = 36.9 bits (84), Expect = 9.7,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 60/197 (30%), Gaps = 15/197 (7%)

Query: 167 IGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER 224
             A  +AS  +  +N    K   A+A   L+A  V       +  +D+    ++      
Sbjct: 22  QEAAKSASNTLSGLNDISTKLDDAQAASELIAQTVEEKSNEIIGAIDNVESAVSDTTAGS 81

Query: 225 NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV 284
            ++ +++ I   I  EI  ++   L     +   +          T         P    
Sbjct: 82  ELIAETVEIGNNINKEIGESLGSKLDKLTSLLEQKIQTAGIQQTGTSLATVESAIP---- 137

Query: 285 ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKS 344
              +++ +D           A     N P       P P   +    +E+Q     N K 
Sbjct: 138 ---VKVVEDDTAESVGPLLPAPEAVNNDPDADFFPTPQPVEPKQESPEEKQKKEAFNLKL 194

Query: 345 IATTHDNYKLERLSIAV 361
                    L++L+  V
Sbjct: 195 SQ------ALDKLTKTV 205


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.309    0.138    0.347 

Lambda     K      H
   0.267   0.0420    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,580,306,742
Number of Sequences: 14124377
Number of extensions: 328478001
Number of successful extensions: 1444426
Number of sequences better than 10.0: 2344
Number of HSP's better than 10.0 without gapping: 2812
Number of HSP's successfully gapped in prelim test: 1187
Number of HSP's that attempted gapping in prelim test: 1427409
Number of HSP's gapped (non-prelim): 4934
length of query: 563
length of database: 4,842,793,630
effective HSP length: 145
effective length of query: 418
effective length of database: 2,794,758,965
effective search space: 1168209247370
effective search space used: 1168209247370
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.1 bits)
S2: 84 (36.9 bits)